Citrus Sinensis ID: 026036
Local Sequence Feature Prediction
| Prediction and (Method) | Result |
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Close Homologs for Annotation Transfer
Close Homologs in SWISS-PROT Database Detected by BLAST 
Original result of BLAST against SWISS-PROT Database
| ID | Alignment graph | Length |
Definition |
RBH(Q2H) |
RBH(H2Q) |
Q cover |
H cover |
Identity |
E-value |
| Query | 244 | 2.2.26 [Sep-21-2011] | |||||||
| P0CP44 | 299 | Putative nicotinamide N-m | yes | no | 0.569 | 0.464 | 0.254 | 9e-07 | |
| P0CP45 | 299 | Putative nicotinamide N-m | N/A | no | 0.569 | 0.464 | 0.254 | 9e-07 | |
| A6QP81 | 257 | Protein-lysine methyltran | yes | no | 0.5 | 0.474 | 0.279 | 4e-06 | |
| Q6DJF8 | 234 | Methyltransferase-like pr | N/A | no | 0.483 | 0.504 | 0.239 | 5e-06 | |
| Q8BLU2 | 248 | Protein-lysine methyltran | yes | no | 0.5 | 0.491 | 0.257 | 6e-06 | |
| Q9UT28 | 255 | Putative nicotinamide N-m | yes | no | 0.709 | 0.678 | 0.217 | 8e-06 | |
| Q5VZV1 | 264 | Protein-lysine methyltran | yes | no | 0.5 | 0.462 | 0.279 | 9e-06 | |
| Q4WYS7 | 259 | Putative nicotinamide N-m | yes | no | 0.692 | 0.652 | 0.225 | 0.0001 | |
| Q58DC7 | 290 | Protein-lysine methyltran | no | no | 0.553 | 0.465 | 0.289 | 0.0006 |
| >sp|P0CP44|NNT1_CRYNJ Putative nicotinamide N-methyltransferase OS=Cryptococcus neoformans var. neoformans serotype D (strain JEC21 / ATCC MYA-565) GN=NNT1 PE=3 SV=1 | Back alignment and function desciption |
|---|
Score = 53.9 bits (128), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 39/153 (25%), Positives = 71/153 (46%), Gaps = 14/153 (9%)
Query: 43 LVIREFAFHQLNANFLWPGTFSFAEWLMHHREWIERRRCIELGSGTGALAIFLRKAMNLD 102
L++R H L + LW + + +L+ + + R +ELG+G G +I A +
Sbjct: 58 LILRLVGSHPLWGHHLWNTARTLSTYLLETPQITQSRHVLELGAGAGLPSIVCVLAGSSK 117
Query: 103 ITTSDYNDQEIEDNIAYNSTTNGITPALPHIK---HSWGDAF-PI-----PNPDWDLILA 153
+ +DY+D+ + DN+ +N N I H WG + P+ +DL++
Sbjct: 118 VIVTDYSDEGLLDNLRFNVDVNLEGEEKERIAVDGHVWGQSVDPLLGHLPKGQKYDLLIL 177
Query: 154 SDILLYVKQYSNLIKSLSVLL-----KSYKPKD 181
SD++ Q+ LIK++ L +SY P +
Sbjct: 178 SDLVFNHSQHDALIKTVEATLTSSSTQSYDPSN 210
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Putative nicotinamide N-methyltransferase involved in rDNA silencing and in lifespan determination. Cryptococcus neoformans var. neoformans serotype D (strain JEC21 / ATCC MYA-565) (taxid: 214684) EC: 2EC: .EC: 1EC: .EC: 1EC: .EC: 1 |
| >sp|P0CP45|NNT1_CRYNB Putative nicotinamide N-methyltransferase OS=Cryptococcus neoformans var. neoformans serotype D (strain B-3501A) GN=NNT1 PE=3 SV=1 | Back alignment and function description |
|---|
Score = 53.9 bits (128), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 39/153 (25%), Positives = 71/153 (46%), Gaps = 14/153 (9%)
Query: 43 LVIREFAFHQLNANFLWPGTFSFAEWLMHHREWIERRRCIELGSGTGALAIFLRKAMNLD 102
L++R H L + LW + + +L+ + + R +ELG+G G +I A +
Sbjct: 58 LILRLVGSHPLWGHHLWNTARTLSTYLLETPQITQSRHVLELGAGAGLPSIVCVLAGSSK 117
Query: 103 ITTSDYNDQEIEDNIAYNSTTNGITPALPHIK---HSWGDAF-PI-----PNPDWDLILA 153
+ +DY+D+ + DN+ +N N I H WG + P+ +DL++
Sbjct: 118 VIVTDYSDEGLLDNLRFNVDVNLEGEEKERIAVDGHVWGQSVDPLLGHLPKGQKYDLLIL 177
Query: 154 SDILLYVKQYSNLIKSLSVLL-----KSYKPKD 181
SD++ Q+ LIK++ L +SY P +
Sbjct: 178 SDLVFNHSQHDALIKTVEATLTSSSTQSYDPSN 210
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Putative nicotinamide N-methyltransferase involved in rDNA silencing and in lifespan determination. Cryptococcus neoformans var. neoformans serotype D (strain B-3501A) (taxid: 283643) EC: 2 EC: . EC: 1 EC: . EC: 1 EC: . EC: 1 |
| >sp|A6QP81|MT21C_BOVIN Protein-lysine methyltransferase METTL21C OS=Bos taurus GN=METTL21C PE=2 SV=1 | Back alignment and function description |
|---|
Score = 52.0 bits (123), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 38/136 (27%), Positives = 70/136 (51%), Gaps = 14/136 (10%)
Query: 31 YVERPHQFPEMELVIREFAFHQLNANFLWPGTFSFAEWLMHHREWIERR--RCIELGSGT 88
Y + ++F ++VI+E + A +WPG + ++L H E + R + +E+G+G
Sbjct: 59 YTQEYYRFVGKKIVIQE-SIESYGA-VVWPGAMALCQYLEEHTEELNLRGAKILEIGAGP 116
Query: 89 GALAIFLRKAMNLDITTSDYNDQEIEDNIAYNSTTNGI--TPALPHIKH-SWGD----AF 141
G ++I + + +T +D D + N+ YN N + T LP +K WG+ +F
Sbjct: 117 GLVSI-VASILGAQVTATDLPD--VLGNLQYNLLKNTLNCTTYLPEVKELVWGEGLEQSF 173
Query: 142 PIPNPDWDLILASDIL 157
P +D +LASD++
Sbjct: 174 PKSTLYYDYVLASDVV 189
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Probable methyltransferase. Bos taurus (taxid: 9913) EC: 2 EC: . EC: 1 EC: . EC: 1 EC: . EC: - |
| >sp|Q6DJF8|MET23_XENLA Methyltransferase-like protein 23 OS=Xenopus laevis GN=mettl23 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 51.6 bits (122), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 29/121 (23%), Positives = 58/121 (47%), Gaps = 3/121 (2%)
Query: 57 FLWPGTFSFAEWLMHHREWIERRRCIELGSGTGALAIFLRKAMNLDITTSDYNDQEIEDN 116
++WP A++L +HR+ + +R +E+G+G I K I + + +N
Sbjct: 42 YVWPCAVVLAQYLWYHRKNLADKRVLEVGAGVSLPGILAAKCGAKVILSDSAEMPQCLEN 101
Query: 117 IAYNSTTNGITPALPHIKHSWGDAFP--IPNPDWDLILASDILLYVKQYSNLIKSLSVLL 174
+ N I +P I +WG+ P + P D+IL SD+ K + +++ ++ L+
Sbjct: 102 CRRSCKMNNIV-GVPVIGLTWGEVSPDLLDLPPIDIILGSDVFYEPKDFEDILLTVRFLM 160
Query: 175 K 175
+
Sbjct: 161 E 161
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Probable methyltransferase. Xenopus laevis (taxid: 8355) EC: 2 EC: . EC: 1 EC: . EC: 1 EC: . EC: - |
| >sp|Q8BLU2|MT21C_MOUSE Protein-lysine methyltransferase METTL21C OS=Mus musculus GN=Mettl21c PE=2 SV=1 | Back alignment and function description |
|---|
Score = 51.2 bits (121), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 35/136 (25%), Positives = 69/136 (50%), Gaps = 14/136 (10%)
Query: 31 YVERPHQFPEMELVIREFAFHQLNANFLWPGTFSFAEWLMHHREW--IERRRCIELGSGT 88
Y + +QF +++I+E + +WPG + ++L H E ++ + +E+G+G
Sbjct: 50 YTQEHYQFAGKKIIIQESI--ENYGTVVWPGATALCQYLEDHTEELNLQDAKILEIGAGA 107
Query: 89 GALAIFLRKAMNLDITTSDYNDQEIEDNIAYNSTTNGI--TPALPHIKH-SWGD----AF 141
G ++I + + +T +D D + N+ YN N + T LP ++ WG+ +F
Sbjct: 108 GLVSI-VSSLLGAQVTATDLPD--VLGNLQYNILKNTLECTAHLPEVRELVWGEDLEQSF 164
Query: 142 PIPNPDWDLILASDIL 157
P +D +LASD++
Sbjct: 165 PKSTCCYDYVLASDVV 180
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Probable methyltransferase. Mus musculus (taxid: 10090) EC: 2 EC: . EC: 1 EC: . EC: 1 EC: . EC: - |
| >sp|Q9UT28|NNT1_SCHPO Putative nicotinamide N-methyltransferase OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=nnt1 PE=3 SV=1 | Back alignment and function description |
|---|
Score = 50.8 bits (120), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 44/202 (21%), Positives = 85/202 (42%), Gaps = 29/202 (14%)
Query: 42 ELVIREFAFHQLNANFLWPGTFSFAEWLMHHREWIERRRCIELGSGTGALAIFLRKAMNL 101
E+ +R H L A++LW A ++ + + + ++ +ELG+G G +I
Sbjct: 41 EIKLRLVGSHSLWAHYLWNSGIELANYIDKNPDTVRAKKVLELGAGAGLPSIVSAFDGAK 100
Query: 102 DITTSDYNDQEIEDNIAYNSTTNG-ITPALPHIKHSWG--------DAFPIPNPDWDLIL 152
+ ++DY D + DN+ +N I + + + WG +A N +D++L
Sbjct: 101 FVVSTDYPDPALIDNLEHNVKQYAEIASKISAVGYLWGSNIKEVMSNAGFKDNEVFDILL 160
Query: 153 ASDILLYVKQYSNLIKSLSVLLKSYKPKDSQVGHLTKNEQGEGTEGLPWPAFLMSWRRRI 212
SD++ ++S LIKS + + EG F R +
Sbjct: 161 LSDLVFNHTEHSKLIKSCKMAI-------------------EGNPNAVVYVFFTHHRPHL 201
Query: 213 GKEDETIFFTSCENAGLEVKHL 234
K+D IFF ++ G +++ +
Sbjct: 202 AKKD-MIFFDIAQSEGFQIEKI 222
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Putative nicotinamide N-methyltransferase involved in rDNA silencing and in lifespan determination. Schizosaccharomyces pombe (strain 972 / ATCC 24843) (taxid: 284812) EC: 2 EC: . EC: 1 EC: . EC: 1 EC: . EC: 1 |
| >sp|Q5VZV1|MT21C_HUMAN Protein-lysine methyltransferase METTL21C OS=Homo sapiens GN=METTL21C PE=1 SV=1 | Back alignment and function description |
|---|
Score = 50.8 bits (120), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 38/136 (27%), Positives = 69/136 (50%), Gaps = 14/136 (10%)
Query: 31 YVERPHQFPEMELVIREFAFHQLNANFLWPGTFSFAEWLMHHREWI--ERRRCIELGSGT 88
Y + ++F E+VI+E + A +WPG + ++L H E + + + +E+G+G
Sbjct: 66 YTQEHYRFAGKEIVIQE-SIESYGA-VVWPGAMALCQYLEEHAEELNFQDAKILEIGAGP 123
Query: 89 GALAIFLRKAMNLDITTSDYNDQEIEDNIAYNSTTNGI--TPALPHIKH-SWGD----AF 141
G ++I + + +T +D D + N+ YN N + T LP +K WG+ F
Sbjct: 124 GLVSI-VASILGAQVTATDLPD--VLGNLQYNLLKNTLQCTAHLPEVKELVWGEDLDKNF 180
Query: 142 PIPNPDWDLILASDIL 157
P +D +LASD++
Sbjct: 181 PKSAFYYDYVLASDVV 196
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Probable methyltransferase. Homo sapiens (taxid: 9606) EC: 2 EC: . EC: 1 EC: . EC: 1 EC: . EC: - |
| >sp|Q4WYS7|NNT1_ASPFU Putative nicotinamide N-methyltransferase OS=Neosartorya fumigata (strain ATCC MYA-4609 / Af293 / CBS 101355 / FGSC A1100) GN=nnt1 PE=3 SV=1 | Back alignment and function description |
|---|
Score = 46.6 bits (109), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 43/191 (22%), Positives = 82/191 (42%), Gaps = 22/191 (11%)
Query: 12 FAEEDDVTVDEETMETCNGYV--ERPHQFPEMELV------IREFAFHQLNANFLWPGTF 63
A E+D +T + G+ E+ F E +++ +R H L + LW
Sbjct: 1 MANEEDFVGFGDTFKDPEGFYPPEKEPTFAEHQMLSGQTVRVRLVGSHPLYGDLLWNAGR 60
Query: 64 SFAEWLMHH-REWIERRRCIELGSGTGALAIFLRKAMNLDITTSDYNDQEIEDNIAYNST 122
+ A ++ +E + +E+G+ G +I + +DY D ++ +N+ YN++
Sbjct: 61 TSATYIEEKASSLVEGKDVLEVGAAAGVPSIVSAVKGARTVVMTDYPDPDLVENMRYNAS 120
Query: 123 TNGITPALPHIKH----SWGDA-------FPIPNPDWDLILASDILLYVKQYSNLIKSLS 171
+ H WGD P + +DL++ +D++ +++ NLIK +
Sbjct: 121 LSAAIIPSSSSLHVAGYKWGDPVEPLTAYLPEGSNSFDLLIMADVVYSYQEHPNLIKVMQ 180
Query: 172 VLLKSYKPKDS 182
LK K KDS
Sbjct: 181 KALK--KSKDS 189
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Putative nicotinamide N-methyltransferase involved in rDNA silencing and in lifespan determination. Neosartorya fumigata (strain ATCC MYA-4609 / Af293 / CBS 101355 / FGSC A1100) (taxid: 330879) EC: 2 EC: . EC: 1 EC: . EC: 1 EC: . EC: 1 |
| >sp|Q58DC7|MT21E_BOVIN Protein-lysine methyltransferase METTL21E OS=Bos taurus GN=METTL21E PE=2 SV=1 | Back alignment and function description |
|---|
Score = 44.7 bits (104), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 46/159 (28%), Positives = 74/159 (46%), Gaps = 24/159 (15%)
Query: 16 DDVTVDEETMETCNGYVERPHQFPEMELVIREFAFHQLNAN--------FLWPGTFSFAE 67
DD TV E M C +V P + FA H++ N +WP
Sbjct: 49 DDRTVVAEIMRRC--FV--PAFVTTIPWEGFHFAGHEIRINEATDCYGAVVWPSALVLCY 104
Query: 68 WLMHHREW--IERRRCIELGSGTGALAIFLRKAMNLDITTSDYNDQEIEDNIAYNSTTNG 125
+L + + + + IE+G+GTG ++I + + +T +D E+ N+ YN + N
Sbjct: 105 FLETNVKQYNLVDKNVIEIGAGTGLVSI-VASLLGAHVTATDL--PELLGNLQYNISRNT 161
Query: 126 ITPA--LPHIKH-SWGDA----FPIPNPDWDLILASDIL 157
T A LP +K SWG A FP + ++D ILA+D++
Sbjct: 162 KTKAKHLPQVKELSWGVALDKNFPRASINFDYILAADVV 200
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Probable methyltransferase. Bos taurus (taxid: 9913) EC: 2 EC: . EC: 1 EC: . EC: 1 EC: . EC: - |
Close Homologs in the Non-Redundant Database Detected by BLAST
Original result of BLAST against Nonredundant Database
| GI | Alignment Graph | Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 244 | ||||||
| 297740209 | 262 | unnamed protein product [Vitis vinifera] | 1.0 | 0.931 | 0.730 | 1e-101 | |
| 224090998 | 257 | predicted protein [Populus trichocarpa] | 0.983 | 0.933 | 0.711 | 1e-98 | |
| 255574371 | 245 | conserved hypothetical protein [Ricinus | 0.975 | 0.971 | 0.738 | 3e-98 | |
| 359482055 | 247 | PREDICTED: methyltransferase-like protei | 0.942 | 0.931 | 0.717 | 5e-98 | |
| 18413626 | 241 | S-adenosyl-L-methionine-dependent methyl | 0.971 | 0.983 | 0.704 | 1e-95 | |
| 145334277 | 245 | S-adenosyl-L-methionine-dependent methyl | 0.987 | 0.983 | 0.709 | 1e-95 | |
| 186519142 | 239 | S-adenosyl-L-methionine-dependent methyl | 0.963 | 0.983 | 0.704 | 6e-95 | |
| 297810255 | 245 | hypothetical protein ARALYDRAFT_486928 [ | 0.987 | 0.983 | 0.704 | 8e-95 | |
| 357468321 | 269 | hypothetical protein MTR_4g012440 [Medic | 0.983 | 0.892 | 0.714 | 1e-94 | |
| 449461775 | 244 | PREDICTED: methyltransferase-like protei | 0.975 | 0.975 | 0.685 | 6e-94 |
| >gi|297740209|emb|CBI30391.3| unnamed protein product [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 374 bits (960), Expect = e-101, Method: Compositional matrix adjust.
Identities = 179/245 (73%), Positives = 200/245 (81%), Gaps = 1/245 (0%)
Query: 1 MDVALFSPSSLFAEEDDVTVDEETMETCNGYVERPHQFPEMELVIREFAFHQLNANFLWP 60
MD+ALFSPSSLFA+++ D E M T YVER H FP EL+IREF+FHQLNAN LWP
Sbjct: 1 MDIALFSPSSLFADDEGCDSDGEKMGTQQSYVERKHDFPGTELLIREFSFHQLNANLLWP 60
Query: 61 GTFSFAEWLMHHREWIERRRCIELGSGTGALAIFLRKAMNLDITTSDYNDQEIEDNIAYN 120
GTF+FAEWL+ HR WIE RR ELGSGTGALAIFLRK+ LDITTSDYNDQEIE+NIAYN
Sbjct: 61 GTFAFAEWLVQHRSWIEGRRSFELGSGTGALAIFLRKSFQLDITTSDYNDQEIEENIAYN 120
Query: 121 STTNGITPALPHIKHSWGDAFPIPNPDWDLILASDILLYVKQYSNLIKSLSVLLKSYKPK 180
NGITP LPHIKHSWGD FPI +PDWDLI+ASDILLYVKQY NLIK+LS LLK YKPK
Sbjct: 121 CRVNGITPILPHIKHSWGDNFPIADPDWDLIIASDILLYVKQYPNLIKTLSFLLKFYKPK 180
Query: 181 DSQVGHLTKNE-QGEGTEGLPWPAFLMSWRRRIGKEDETIFFTSCENAGLEVKHLGSRVY 239
D + +NE + E EGLP PAFLMSWRRRIGKEDE++FFT C+NAGLEVKH+GSRV+
Sbjct: 181 DDSAISIMENEHKNETYEGLPQPAFLMSWRRRIGKEDESLFFTGCKNAGLEVKHMGSRVF 240
Query: 240 CIKLR 244
CI R
Sbjct: 241 CITPR 245
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|224090998|ref|XP_002309139.1| predicted protein [Populus trichocarpa] gi|222855115|gb|EEE92662.1| predicted protein [Populus trichocarpa] | Back alignment and taxonomy information |
|---|
Score = 365 bits (936), Expect = 1e-98, Method: Compositional matrix adjust.
Identities = 173/243 (71%), Positives = 204/243 (83%), Gaps = 3/243 (1%)
Query: 1 MDVALFSPSSLFAEEDDVTVDEETMETCNGYVERPHQFPEMELVIREFAFHQLNANFLWP 60
MD+ALFSPSSLFA++DD + EET ET +VER H FP MEL+IREF+FH+LNAN LWP
Sbjct: 1 MDIALFSPSSLFADDDDFS-SEETKETQQNHVERRHSFPGMELLIREFSFHKLNANLLWP 59
Query: 61 GTFSFAEWLMHHREWIERRRCIELGSGTGALAIFLRKAMNLDITTSDYNDQEIEDNIAYN 120
GTF+FAEWL+ +R +E R CIELGSGTGALAIFLRK+ +LDITTSDYNDQEIE+NIA+N
Sbjct: 60 GTFAFAEWLVQNRPLVEGRHCIELGSGTGALAIFLRKSFHLDITTSDYNDQEIEENIAHN 119
Query: 121 STTNGITPALPHIKHSWGDAFPIPNPDWDLILASDILLYVKQYSNLIKSLSVLLKSYKPK 180
NG+TP LPHI+HSWGD FP +PDWDL++ASDILLYVKQY NLIK+LS LLKSYK K
Sbjct: 120 CRVNGVTPVLPHIRHSWGDTFPAADPDWDLVIASDILLYVKQYPNLIKTLSFLLKSYKLK 179
Query: 181 DSQVGHLTKNEQGEGTE--GLPWPAFLMSWRRRIGKEDETIFFTSCENAGLEVKHLGSRV 238
+ + G + +NEQ GT GLP PAFLMSWRRRIGKEDE++FF CE+AGL+V+HLGSRV
Sbjct: 180 NDRAGSIMENEQNGGTHNIGLPRPAFLMSWRRRIGKEDESLFFDGCESAGLQVEHLGSRV 239
Query: 239 YCI 241
YCI
Sbjct: 240 YCI 242
|
Source: Populus trichocarpa Species: Populus trichocarpa Genus: Populus Family: Salicaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|255574371|ref|XP_002528099.1| conserved hypothetical protein [Ricinus communis] gi|223532488|gb|EEF34278.1| conserved hypothetical protein [Ricinus communis] | Back alignment and taxonomy information |
|---|
Score = 363 bits (933), Expect = 3e-98, Method: Compositional matrix adjust.
Identities = 181/245 (73%), Positives = 199/245 (81%), Gaps = 7/245 (2%)
Query: 1 MDVALFSPSSLFA--EEDDVTVDEETMETCNGYVERPHQFPEMELVIREFAFHQLNANFL 58
MD+ALFSPSSLFA + D D+E E YVER H FP MEL+IREF+FHQLNAN L
Sbjct: 1 MDIALFSPSSLFAGDTDSDSVTDKEIKENLEDYVERRHNFPGMELLIREFSFHQLNANLL 60
Query: 59 WPGTFSFAEWLMHHREWIERRRCIELGSGTGALAIFLRKAMNLDITTSDYNDQEIEDNIA 118
WPGTFSFAEWL+ HR IE RRCIELGSGTGALAIFLRK+ NLDITTSDYNDQEIE+NIA
Sbjct: 61 WPGTFSFAEWLVEHRLDIEGRRCIELGSGTGALAIFLRKSFNLDITTSDYNDQEIEENIA 120
Query: 119 YNSTTNGITPALPHIKHSWGDAFPIPNPDWDLILASDILLYVKQYSNLIKSLSVLLKSYK 178
+N N ITPALPHIKHSWGD FP +PDWDL++ASDILLYVKQY NLIK+LS LLKSYK
Sbjct: 121 HNCRVNEITPALPHIKHSWGDTFPSADPDWDLVIASDILLYVKQYPNLIKTLSFLLKSYK 180
Query: 179 PKDSQVGHLTKNEQGEGT-EGLPWPAFLMSWRRRIGKEDETIFFTSCENAGLEVKHLGSR 237
P + + +EQ GT GLP PAFLMSWRRRIGKEDE+ FFT CE+AGLEVKHLGSR
Sbjct: 181 PDKA----VAASEQNGGTYMGLPRPAFLMSWRRRIGKEDESFFFTGCEDAGLEVKHLGSR 236
Query: 238 VYCIK 242
VYCIK
Sbjct: 237 VYCIK 241
|
Source: Ricinus communis Species: Ricinus communis Genus: Ricinus Family: Euphorbiaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|359482055|ref|XP_002274825.2| PREDICTED: methyltransferase-like protein 21C-like [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 362 bits (930), Expect = 5e-98, Method: Compositional matrix adjust.
Identities = 175/244 (71%), Positives = 193/244 (79%), Gaps = 14/244 (5%)
Query: 1 MDVALFSPSSLFAEEDDVTVDEETMETCNGYVERPHQFPEMELVIREFAFHQLNANFLWP 60
MD+ALFSPSSLFA+++ D E M T YVER H FP EL+IREF+FHQLNAN LWP
Sbjct: 1 MDIALFSPSSLFADDEGCDSDGEKMGTQQSYVERKHDFPGTELLIREFSFHQLNANLLWP 60
Query: 61 GTFSFAEWLMHHREWIERRRCIELGSGTGALAIFLRKAMNLDITTSDYNDQEIEDNIAYN 120
GTF+FAEWL+ HR WIE RR ELGSGTGALAIFLRK+ LDITTSDYNDQEIE+NIAYN
Sbjct: 61 GTFAFAEWLVQHRSWIEGRRSFELGSGTGALAIFLRKSFQLDITTSDYNDQEIEENIAYN 120
Query: 121 STTNGITPALPHIKHSWGDAFPIPNPDWDLILASDILLYVKQYSNLIKSLSVLLKSYKPK 180
NGITP LPHIKHSWGD FPI +PDWDLI+ASDILLYVKQY NLIK+LS LLK YKPK
Sbjct: 121 CRVNGITPILPHIKHSWGDNFPIADPDWDLIIASDILLYVKQYPNLIKTLSFLLKFYKPK 180
Query: 181 DSQVGHLTKNEQGEGTEGLPWPAFLMSWRRRIGKEDETIFFTSCENAGLEVKHLGSRVYC 240
D GLP PAFLMSWRRRIGKEDE++FFT C+NAGLEVKH+GSRV+C
Sbjct: 181 DDS--------------GLPQPAFLMSWRRRIGKEDESLFFTGCKNAGLEVKHMGSRVFC 226
Query: 241 IKLR 244
I R
Sbjct: 227 ITPR 230
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|18413626|ref|NP_568090.1| S-adenosyl-L-methionine-dependent methyltransferase family protein [Arabidopsis thaliana] gi|21554308|gb|AAM63413.1| unknown [Arabidopsis thaliana] gi|92856600|gb|ABE77406.1| At5g01470 [Arabidopsis thaliana] gi|332002965|gb|AED90348.1| S-adenosyl-L-methionine-dependent methyltransferase family protein [Arabidopsis thaliana] | Back alignment and taxonomy information |
|---|
Score = 355 bits (911), Expect = 1e-95, Method: Compositional matrix adjust.
Identities = 172/244 (70%), Positives = 196/244 (80%), Gaps = 7/244 (2%)
Query: 1 MDVALFSPSSLFAEEDDVTVDEETMETCNGYVERPHQFPEMELVIREFAFHQLNANFLWP 60
MD+ALFSP+SLFA + D + D ET ET +VER HQFP +EL IREF FHQLNAN LWP
Sbjct: 1 MDIALFSPASLFAADGDSS-DGETTETSQNFVERNHQFPGIELQIREFGFHQLNANLLWP 59
Query: 61 GTFSFAEWLMHHREWIERRRCIELGSGTGALAIFLRKAMNLDITTSDYNDQEIEDNIAYN 120
GTF+FA+WL+ HR IERRRC+E+GSGTGALAIFL+K NLDITTSDYNDQEIEDNI +N
Sbjct: 60 GTFAFADWLLQHRYLIERRRCLEIGSGTGALAIFLKKEFNLDITTSDYNDQEIEDNIVHN 119
Query: 121 STTNGITPALPHIKHSWGDAFPIPNPDWDLILASDILLYVKQYSNLIKSLSVLLKSYKPK 180
N I P+LPHIKH+WGD FPI PDWDLI+ASDILLYVKQY NLIKSL+ LLK YKP
Sbjct: 120 CIANKIIPSLPHIKHTWGDEFPISEPDWDLIIASDILLYVKQYPNLIKSLTFLLKKYKPT 179
Query: 181 DSQVGHLTKNEQGEGTEGLPWPAFLMSWRRRIGKEDETIFFTSCENAGLEVKHLGSRVYC 240
+ + +G TE LP P FLMSWRRRIGK+DE++FFT CE AGLEVKHLG+RVYC
Sbjct: 180 N-----VVSPAEGADTE-LPRPVFLMSWRRRIGKDDESLFFTGCEEAGLEVKHLGNRVYC 233
Query: 241 IKLR 244
IKLR
Sbjct: 234 IKLR 237
|
Source: Arabidopsis thaliana Species: Arabidopsis thaliana Genus: Arabidopsis Family: Brassicaceae Order: Brassicales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|145334277|ref|NP_001078520.1| S-adenosyl-L-methionine-dependent methyltransferase family protein [Arabidopsis thaliana] gi|332002966|gb|AED90349.1| S-adenosyl-L-methionine-dependent methyltransferase family protein [Arabidopsis thaliana] | Back alignment and taxonomy information |
|---|
Score = 354 bits (909), Expect = 1e-95, Method: Compositional matrix adjust.
Identities = 173/244 (70%), Positives = 195/244 (79%), Gaps = 3/244 (1%)
Query: 1 MDVALFSPSSLFAEEDDVTVDEETMETCNGYVERPHQFPEMELVIREFAFHQLNANFLWP 60
MD+ALFSP+SLFA + D + D ET ET +VER HQFP +EL IREF FHQLNAN LWP
Sbjct: 1 MDIALFSPASLFAADGDSS-DGETTETSQNFVERNHQFPGIELQIREFGFHQLNANLLWP 59
Query: 61 GTFSFAEWLMHHREWIERRRCIELGSGTGALAIFLRKAMNLDITTSDYNDQEIEDNIAYN 120
GTF+FA+WL+ HR IERRRC+E+GSGTGALAIFL+K NLDITTSDYNDQEIEDNI +N
Sbjct: 60 GTFAFADWLLQHRYLIERRRCLEIGSGTGALAIFLKKEFNLDITTSDYNDQEIEDNIVHN 119
Query: 121 STTNGITPALPHIKHSWGDAFPIPNPDWDLILASDILLYVKQYSNLIKSLSVLLKSYKPK 180
N I P+LPHIKH+WGD FPI PDWDLI+ASDILLYVKQY NLIKSL+ LLK YKP
Sbjct: 120 CIANKIIPSLPHIKHTWGDEFPISEPDWDLIIASDILLYVKQYPNLIKSLTFLLKKYKPT 179
Query: 181 DSQVGHLTKNEQGEGTEGLPWPAFLMSWRRRIGKEDETIFFTSCENAGLEVKHLGSRVYC 240
+ V G TE LP P FLMSWRRRIGK+DE++FFT CE AGLEVKHLG+RVYC
Sbjct: 180 NV-VSPAEGKLNGADTE-LPRPVFLMSWRRRIGKDDESLFFTGCEEAGLEVKHLGNRVYC 237
Query: 241 IKLR 244
IKLR
Sbjct: 238 IKLR 241
|
Source: Arabidopsis thaliana Species: Arabidopsis thaliana Genus: Arabidopsis Family: Brassicaceae Order: Brassicales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|186519142|ref|NP_001119149.1| S-adenosyl-L-methionine-dependent methyltransferase family protein [Arabidopsis thaliana] gi|332002967|gb|AED90350.1| S-adenosyl-L-methionine-dependent methyltransferase family protein [Arabidopsis thaliana] | Back alignment and taxonomy information |
|---|
Score = 352 bits (904), Expect = 6e-95, Method: Compositional matrix adjust.
Identities = 172/244 (70%), Positives = 194/244 (79%), Gaps = 9/244 (3%)
Query: 1 MDVALFSPSSLFAEEDDVTVDEETMETCNGYVERPHQFPEMELVIREFAFHQLNANFLWP 60
MD+ALFSP+SLFA + D + D ET ET +VER HQFP +EL IREF FHQLNAN LWP
Sbjct: 1 MDIALFSPASLFAADGDSS-DGETTETSQNFVERNHQFPGIELQIREFGFHQLNANLLWP 59
Query: 61 GTFSFAEWLMHHREWIERRRCIELGSGTGALAIFLRKAMNLDITTSDYNDQEIEDNIAYN 120
GTF+FA+WL+ HR IERRRC+E+GSGTGALAIFL+K NLDITTSDYNDQEIEDNI +N
Sbjct: 60 GTFAFADWLLQHRYLIERRRCLEIGSGTGALAIFLKKEFNLDITTSDYNDQEIEDNIVHN 119
Query: 121 STTNGITPALPHIKHSWGDAFPIPNPDWDLILASDILLYVKQYSNLIKSLSVLLKSYKPK 180
N I P+LPHIKH+WGD FPI PDWDLI+ASDILLYVKQY NLIKSL+ LLK YKP
Sbjct: 120 CIANKIIPSLPHIKHTWGDEFPISEPDWDLIIASDILLYVKQYPNLIKSLTFLLKKYKPT 179
Query: 181 DSQVGHLTKNEQGEGTEGLPWPAFLMSWRRRIGKEDETIFFTSCENAGLEVKHLGSRVYC 240
+ E TE LP P FLMSWRRRIGK+DE++FFT CE AGLEVKHLG+RVYC
Sbjct: 180 NVV-------SPAEDTE-LPRPVFLMSWRRRIGKDDESLFFTGCEEAGLEVKHLGNRVYC 231
Query: 241 IKLR 244
IKLR
Sbjct: 232 IKLR 235
|
Source: Arabidopsis thaliana Species: Arabidopsis thaliana Genus: Arabidopsis Family: Brassicaceae Order: Brassicales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|297810255|ref|XP_002873011.1| hypothetical protein ARALYDRAFT_486928 [Arabidopsis lyrata subsp. lyrata] gi|297318848|gb|EFH49270.1| hypothetical protein ARALYDRAFT_486928 [Arabidopsis lyrata subsp. lyrata] | Back alignment and taxonomy information |
|---|
Score = 352 bits (903), Expect = 8e-95, Method: Compositional matrix adjust.
Identities = 172/244 (70%), Positives = 196/244 (80%), Gaps = 3/244 (1%)
Query: 1 MDVALFSPSSLFAEEDDVTVDEETMETCNGYVERPHQFPEMELVIREFAFHQLNANFLWP 60
MD+ALFSPSSLFA + D + D ET ET +VER HQFP +EL IREF FHQLNAN LWP
Sbjct: 1 MDIALFSPSSLFAADGDSS-DGETTETRQSFVERNHQFPGIELQIREFGFHQLNANLLWP 59
Query: 61 GTFSFAEWLMHHREWIERRRCIELGSGTGALAIFLRKAMNLDITTSDYNDQEIEDNIAYN 120
GTF+FA+WL+ HR I+RRRC+E+GSGTGALAIFL+K +LDITTSDYNDQEIEDNI +N
Sbjct: 60 GTFAFADWLVQHRHLIQRRRCLEIGSGTGALAIFLKKEFDLDITTSDYNDQEIEDNIVHN 119
Query: 121 STTNGITPALPHIKHSWGDAFPIPNPDWDLILASDILLYVKQYSNLIKSLSVLLKSYKPK 180
N I P+LPHIKH+WGD FPI PDWDLI+ASDILLYVKQY NLIKSL+ LLK+YKP
Sbjct: 120 CIANKIIPSLPHIKHTWGDEFPISEPDWDLIIASDILLYVKQYPNLIKSLTFLLKTYKPT 179
Query: 181 DSQVGHLTKNEQGEGTEGLPWPAFLMSWRRRIGKEDETIFFTSCENAGLEVKHLGSRVYC 240
+ V G TE LP P FLMSWRRRIGK+DE++FFT CE AGLEVKHLG+RVYC
Sbjct: 180 NV-VSPAECKLNGADTE-LPHPVFLMSWRRRIGKDDESLFFTGCEEAGLEVKHLGNRVYC 237
Query: 241 IKLR 244
IKLR
Sbjct: 238 IKLR 241
|
Source: Arabidopsis lyrata subsp. lyrata Species: Arabidopsis lyrata Genus: Arabidopsis Family: Brassicaceae Order: Brassicales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|357468321|ref|XP_003604445.1| hypothetical protein MTR_4g012440 [Medicago truncatula] gi|355505500|gb|AES86642.1| hypothetical protein MTR_4g012440 [Medicago truncatula] | Back alignment and taxonomy information |
|---|
Score = 351 bits (901), Expect = 1e-94, Method: Compositional matrix adjust.
Identities = 175/245 (71%), Positives = 196/245 (80%), Gaps = 5/245 (2%)
Query: 1 MDVALFSPSSLFAEEDDV----TVDEETMETCNGYVERPHQFPEMELVIREFAFHQLNAN 56
MD+ALFS SSLFAEEDD T DEE ET YVER HQFP MEL+IREF+FHQLNAN
Sbjct: 1 MDIALFSTSSLFAEEDDDDDIHTKDEENAETHETYVERKHQFPGMELIIREFSFHQLNAN 60
Query: 57 FLWPGTFSFAEWLMHHREWIERRRCIELGSGTGALAIFLRKAMNLDITTSDYNDQEIEDN 116
LWPGTF+FAEWL+ HR IE RR IELGSGTGALAIFLRK+ NLDITTSDY+DQEI +N
Sbjct: 61 LLWPGTFAFAEWLVQHRSCIEGRRTIELGSGTGALAIFLRKSYNLDITTSDYDDQEIMEN 120
Query: 117 IAYNSTTNGITPALPHIKHSWGDAFPIPNPDWDLILASDILLYVKQYSNLIKSLSVLLKS 176
IA+N N + P +PHIKH+WGD FP +PDWDLI+ASDILLYVKQY NLI+++S LLKS
Sbjct: 121 IAHNCGANDL-PVIPHIKHTWGDKFPNSDPDWDLIIASDILLYVKQYPNLIQTISFLLKS 179
Query: 177 YKPKDSQVGHLTKNEQGEGTEGLPWPAFLMSWRRRIGKEDETIFFTSCENAGLEVKHLGS 236
YK D T N++ G LPWPAFLMSWRRRIGKEDE+IFF CENAGLEVKH+GS
Sbjct: 180 YKHGDRTTVSPTGNDETHGDVVLPWPAFLMSWRRRIGKEDESIFFNGCENAGLEVKHIGS 239
Query: 237 RVYCI 241
RVYCI
Sbjct: 240 RVYCI 244
|
Source: Medicago truncatula Species: Medicago truncatula Genus: Medicago Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|449461775|ref|XP_004148617.1| PREDICTED: methyltransferase-like protein 21B-like [Cucumis sativus] | Back alignment and taxonomy information |
|---|
Score = 349 bits (895), Expect = 6e-94, Method: Compositional matrix adjust.
Identities = 168/245 (68%), Positives = 196/245 (80%), Gaps = 7/245 (2%)
Query: 1 MDVALFSPSSLFAEEDDVTV-DEETMETCNGYVERPHQFPEMELVIREFAFHQLNANFLW 59
MD+ALFSPSSLF ++DD + D T++T Y ER HQFP MELVIREF+FHQLNAN LW
Sbjct: 1 MDIALFSPSSLFPDDDDESSNDAGTLDTLQSYEERKHQFPGMELVIREFSFHQLNANLLW 60
Query: 60 PGTFSFAEWLMHHREWIERRRCIELGSGTGALAIFLRKAMNLDITTSDYNDQEIEDNIAY 119
PGTF+FAEWL+ + WI+ RCIELGSGTG+LAIFLRK+ +LDITTSDY+DQEIE+NIAY
Sbjct: 61 PGTFAFAEWLVQNSSWIQGHRCIELGSGTGSLAIFLRKSFDLDITTSDYDDQEIEENIAY 120
Query: 120 NSTTNGITPALPHIKHSWGDAFPIPNPDWDLILASDILLYVKQYSNLIKSLSVLLKSYKP 179
N NGITPALPH+KH+WGD+FPI +PDWDL++ASDILLYVKQY NLIK+LS LLK
Sbjct: 121 NCRVNGITPALPHVKHTWGDSFPISDPDWDLVIASDILLYVKQYPNLIKTLSYLLKRNYS 180
Query: 180 KDSQVGHLTKNEQGEGTEGLPW--PAFLMSWRRRIGKEDETIFFTSCENAGLEVKHLGSR 237
K + + + +E G P P FLMSWRRRIGKEDE +FF CENAGLEVKHLGSR
Sbjct: 181 KTTSLSAIGNDEAA----GAPMAKPMFLMSWRRRIGKEDELLFFNGCENAGLEVKHLGSR 236
Query: 238 VYCIK 242
VYCIK
Sbjct: 237 VYCIK 241
|
Source: Cucumis sativus Species: Cucumis sativus Genus: Cucumis Family: Cucurbitaceae Order: Cucurbitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
Prediction of Gene Ontology (GO) Terms
Close Homologs with Gene Ontology terms Detected by BLAST
Original result of BLAST against Gene Ontology (AMIGO)
| ID |
Alignment graph |
Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 244 | ||||||
| TAIR|locus:2179202 | 245 | AT5G01470 "AT5G01470" [Arabido | 0.987 | 0.983 | 0.688 | 2.3e-87 | |
| UNIPROTKB|A6QP81 | 257 | METTL21C "Protein-lysine methy | 0.508 | 0.482 | 0.275 | 1.1e-07 | |
| UNIPROTKB|Q5VZV1 | 264 | METTL21C "Protein-lysine methy | 0.508 | 0.469 | 0.275 | 4.2e-07 | |
| MGI|MGI:3611450 | 248 | Mettl21c "methyltransferase li | 0.508 | 0.5 | 0.253 | 8e-07 | |
| RGD|1561425 | 248 | Mettl21c "methyltransferase li | 0.508 | 0.5 | 0.260 | 8e-07 | |
| POMBASE|SPAC8F11.09c | 255 | nnt1 "nicotinamide N-methyltra | 0.557 | 0.533 | 0.246 | 1.9e-05 | |
| TAIR|locus:2078002 | 251 | AT3G50850 "AT3G50850" [Arabido | 0.372 | 0.362 | 0.31 | 0.00017 | |
| UNIPROTKB|Q9H867 | 229 | METTL21D "Protein-lysine methy | 0.372 | 0.397 | 0.295 | 0.00031 | |
| DICTYBASE|DDB_G0281059 | 355 | DDB_G0281059 "methyltransferas | 0.565 | 0.388 | 0.24 | 0.00047 | |
| UNIPROTKB|Q58DC7 | 290 | METTL21E "Protein-lysine methy | 0.397 | 0.334 | 0.302 | 0.00073 |
| TAIR|locus:2179202 AT5G01470 "AT5G01470" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 873 (312.4 bits), Expect = 2.3e-87, P = 2.3e-87
Identities = 168/244 (68%), Positives = 188/244 (77%)
Query: 1 MDVALFSPSSLFAXXXXXXXXXXXXXXCNGYVERPHQFPEMELVIREFAFHQLNANFLWP 60
MD+ALFSP+SLFA N +VER HQFP +EL IREF FHQLNAN LWP
Sbjct: 1 MDIALFSPASLFAADGDSSDGETTETSQN-FVERNHQFPGIELQIREFGFHQLNANLLWP 59
Query: 61 GTFSFAEWLMHHREWIERRRCIELGSGTGALAIFLRKAMNLDITTSDYNDQEIEDNIAYN 120
GTF+FA+WL+ HR IERRRC+E+GSGTGALAIFL+K NLDITTSDYNDQEIEDNI +N
Sbjct: 60 GTFAFADWLLQHRYLIERRRCLEIGSGTGALAIFLKKEFNLDITTSDYNDQEIEDNIVHN 119
Query: 121 STTNGITPALPHIKHSWGDAFPIPNPDWDLILASDILLYVKQYSNLIKSLSVLLKSYKPK 180
N I P+LPHIKH+WGD FPI PDWDLI+ASDILLYVKQY NLIKSL+ LLK YKP
Sbjct: 120 CIANKIIPSLPHIKHTWGDEFPISEPDWDLIIASDILLYVKQYPNLIKSLTFLLKKYKPT 179
Query: 181 DSQVGHLTKNEQGEGTEGLPWPAFLMSWRRRIGKEDETIFFTSCENAGLEVKHLGSRVYC 240
+ V G TE LP P FLMSWRRRIGK+DE++FFT CE AGLEVKHLG+RVYC
Sbjct: 180 NV-VSPAEGKLNGADTE-LPRPVFLMSWRRRIGKDDESLFFTGCEEAGLEVKHLGNRVYC 237
Query: 241 IKLR 244
IKLR
Sbjct: 238 IKLR 241
|
|
| UNIPROTKB|A6QP81 METTL21C "Protein-lysine methyltransferase METTL21C" [Bos taurus (taxid:9913)] | Back alignment and assigned GO terms |
|---|
Score = 139 (54.0 bits), Expect = 1.1e-07, P = 1.1e-07
Identities = 38/138 (27%), Positives = 71/138 (51%)
Query: 31 YVERPHQFPEMELVIREFAFHQLNANFLWPGTFSFAEWLMHHREWIERR--RCIELGSGT 88
Y + ++F ++VI+E + A +WPG + ++L H E + R + +E+G+G
Sbjct: 59 YTQEYYRFVGKKIVIQE-SIESYGA-VVWPGAMALCQYLEEHTEELNLRGAKILEIGAGP 116
Query: 89 GALAIFLRKAMNLDITTSDYNDQEIEDNIAYNSTTNGI--TPALPHIKHS-WGD----AF 141
G ++I + + +T +D D + N+ YN N + T LP +K WG+ +F
Sbjct: 117 GLVSI-VASILGAQVTATDLPD--VLGNLQYNLLKNTLNCTTYLPEVKELVWGEGLEQSF 173
Query: 142 PIPNPDWDLILASDILLY 159
P +D +LASD++ +
Sbjct: 174 PKSTLYYDYVLASDVVYH 191
|
|
| UNIPROTKB|Q5VZV1 METTL21C "Protein-lysine methyltransferase METTL21C" [Homo sapiens (taxid:9606)] | Back alignment and assigned GO terms |
|---|
Score = 135 (52.6 bits), Expect = 4.2e-07, P = 4.2e-07
Identities = 38/138 (27%), Positives = 70/138 (50%)
Query: 31 YVERPHQFPEMELVIREFAFHQLNANFLWPGTFSFAEWLMHHREWI--ERRRCIELGSGT 88
Y + ++F E+VI+E + A +WPG + ++L H E + + + +E+G+G
Sbjct: 66 YTQEHYRFAGKEIVIQE-SIESYGA-VVWPGAMALCQYLEEHAEELNFQDAKILEIGAGP 123
Query: 89 GALAIFLRKAMNLDITTSDYNDQEIEDNIAYNSTTNGI--TPALPHIKHS-WGDA----F 141
G ++I + + +T +D D + N+ YN N + T LP +K WG+ F
Sbjct: 124 GLVSI-VASILGAQVTATDLPD--VLGNLQYNLLKNTLQCTAHLPEVKELVWGEDLDKNF 180
Query: 142 PIPNPDWDLILASDILLY 159
P +D +LASD++ +
Sbjct: 181 PKSAFYYDYVLASDVVYH 198
|
|
| MGI|MGI:3611450 Mettl21c "methyltransferase like 21C" [Mus musculus (taxid:10090)] | Back alignment and assigned GO terms |
|---|
Score = 132 (51.5 bits), Expect = 8.0e-07, P = 8.0e-07
Identities = 35/138 (25%), Positives = 70/138 (50%)
Query: 31 YVERPHQFPEMELVIREFAFHQLNANFLWPGTFSFAEWLMHHREWIERR--RCIELGSGT 88
Y + +QF +++I+E + +WPG + ++L H E + + + +E+G+G
Sbjct: 50 YTQEHYQFAGKKIIIQESIENY--GTVVWPGATALCQYLEDHTEELNLQDAKILEIGAGA 107
Query: 89 GALAIFLRKAMNLDITTSDYNDQEIEDNIAYNSTTNGI--TPALPHIKHS-WGD----AF 141
G ++I + + +T +D D + N+ YN N + T LP ++ WG+ +F
Sbjct: 108 GLVSI-VSSLLGAQVTATDLPD--VLGNLQYNILKNTLECTAHLPEVRELVWGEDLEQSF 164
Query: 142 PIPNPDWDLILASDILLY 159
P +D +LASD++ +
Sbjct: 165 PKSTCCYDYVLASDVVYH 182
|
|
| RGD|1561425 Mettl21c "methyltransferase like 21C" [Rattus norvegicus (taxid:10116)] | Back alignment and assigned GO terms |
|---|
Score = 132 (51.5 bits), Expect = 8.0e-07, P = 8.0e-07
Identities = 36/138 (26%), Positives = 70/138 (50%)
Query: 31 YVERPHQFPEMELVIREFAFHQLNANFLWPGTFSFAEWLMHHREWI--ERRRCIELGSGT 88
Y + + F +++I+E + +WPG + ++L H E + E + +E+G+G
Sbjct: 50 YTQEHYHFAGKKIIIQESIENY--GTVVWPGATALCQYLEDHTEELNLEDAKILEIGAGP 107
Query: 89 GALAIFLRKAMNLDITTSDYNDQEIEDNIAYNSTTNGI--TPALPHIKHS-WGD----AF 141
G ++I + + +T +D D + N+ YN + N + T LP +K WG+ F
Sbjct: 108 GLVSI-VSSLLGAQVTATDLPD--VLGNLQYNISKNTLECTAHLPEVKELVWGEDLDQKF 164
Query: 142 PIPNPDWDLILASDILLY 159
P + +D +LASD++ +
Sbjct: 165 PKSSFYYDYVLASDVVYH 182
|
|
| POMBASE|SPAC8F11.09c nnt1 "nicotinamide N-methyltransferase Nnt1 (predicted)" [Schizosaccharomyces pombe (taxid:4896)] | Back alignment and assigned GO terms |
|---|
Score = 121 (47.7 bits), Expect = 1.9e-05, P = 1.9e-05
Identities = 36/146 (24%), Positives = 70/146 (47%)
Query: 39 PEMELVIREFAFHQLNANFLWPGTFSFAEWLMHHREWIERRRCIELGSGTGALAIFLRKA 98
PE E+ +R H L A++LW A ++ + + + ++ +ELG+G G +I
Sbjct: 39 PE-EIKLRLVGSHSLWAHYLWNSGIELANYIDKNPDTVRAKKVLELGAGAGLPSIVSAFD 97
Query: 99 MNLDITTSDYNDQEIEDNIAYNSTTNG-ITPALPHIKHSWG--------DAFPIPNPDWD 149
+ ++DY D + DN+ +N I + + + WG +A N +D
Sbjct: 98 GAKFVVSTDYPDPALIDNLEHNVKQYAEIASKISAVGYLWGSNIKEVMSNAGFKDNEVFD 157
Query: 150 LILASDILLYVKQYSNLIKSLSVLLK 175
++L SD++ ++S LIKS + ++
Sbjct: 158 ILLLSDLVFNHTEHSKLIKSCKMAIE 183
|
|
| TAIR|locus:2078002 AT3G50850 "AT3G50850" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 113 (44.8 bits), Expect = 0.00017, P = 0.00017
Identities = 31/100 (31%), Positives = 53/100 (53%)
Query: 82 IELGSGTGALAIFLRKAMNLDITTSDYNDQEIEDNIAYNSTTNGITPAL----PHIKH-S 136
+ELGSGTG + I + ++T +D + + +N+ +N+ N A H+
Sbjct: 93 VELGSGTGIVGIAAAATLGANVTVTDLPN--VIENLKFNADANAQVVAKFGGKVHVASLR 150
Query: 137 WGDAFPIPN--PDWDLILASDILLYVKQYSNLIKSLSVLL 174
WG+ + + + DLILASD++ +V Y L+K+L LL
Sbjct: 151 WGEIDDVESLGQNVDLILASDVVYHVHLYEPLLKTLRFLL 190
|
|
| UNIPROTKB|Q9H867 METTL21D "Protein-lysine methyltransferase METTL21D" [Homo sapiens (taxid:9606)] | Back alignment and assigned GO terms |
|---|
Score = 110 (43.8 bits), Expect = 0.00031, P = 0.00031
Identities = 29/98 (29%), Positives = 51/98 (52%)
Query: 76 IERRRCIELGSGTGALAIFLRKAMNLDITTSDYNDQEIEDNIAYNSTTNG--ITPALPHI 133
+ RR +ELGSGTGA+ + + + D+ +D +E++D + N N +T ++
Sbjct: 66 LSRRSVLELGSGTGAVGL-MAATLGADVVVTDL--EELQDLLKMNINMNKHLVTGSVQAK 122
Query: 134 KHSWGDAFP-IPNPDWDLILASDILLYVKQYSNLIKSL 170
WG+ P+P D IL +D + Y + L+K+L
Sbjct: 123 VLKWGEEIEGFPSPP-DFILMADCIYYEESLEPLLKTL 159
|
|
| DICTYBASE|DDB_G0281059 DDB_G0281059 "methyltransferase type 12 domain-containing protein" [Dictyostelium discoideum (taxid:44689)] | Back alignment and assigned GO terms |
|---|
Score = 112 (44.5 bits), Expect = 0.00047, P = 0.00047
Identities = 36/150 (24%), Positives = 74/150 (49%)
Query: 31 YVERPHQFPEMELVIREFAFHQLNANF-LWPGTFSFAEWLMHHREWIERRRCIELGSGTG 89
Y E+ QF M + +++ F ++ + +W F +W++ +++ + + +ELGSG G
Sbjct: 151 YSEQTGQFQWM-IEMKQLHFDEVFVGWRVWEAGIGFGKWVLENKQIFQGKEVLELGSGLG 209
Query: 90 ALAIFLRKAMNLDITTSDYNDQ---EIEDNIAYNSTTNGITPALPHIKHSW-GDAFPIPN 145
+A F+ + + +DY + ++DN+ NS I A W D P P
Sbjct: 210 -VAGFMAGLICKSVLMTDYTPKLVSALKDNLKINSRIPEIKKACTVQALDWVNDKAPKPF 268
Query: 146 PDWDLILASDILL---YVKQYSNLI-KSLS 171
+D+++ S+++ V +N+I +SL+
Sbjct: 269 -HYDIVIGSEVIYDEKIVDHLANIIHQSLT 297
|
|
| UNIPROTKB|Q58DC7 METTL21E "Protein-lysine methyltransferase METTL21E" [Bos taurus (taxid:9913)] | Back alignment and assigned GO terms |
|---|
Score = 109 (43.4 bits), Expect = 0.00073, P = 0.00072
Identities = 33/109 (30%), Positives = 59/109 (54%)
Query: 58 LWPGTFSFAEWLMHH-REW-IERRRCIELGSGTGALAIFLRKAMNLDITTSDYNDQEIED 115
+WP +L + +++ + + IE+G+GTG ++I + + +T +D E+
Sbjct: 95 VWPSALVLCYFLETNVKQYNLVDKNVIEIGAGTGLVSI-VASLLGAHVTATDL--PELLG 151
Query: 116 NIAYNSTTNGITPA--LPHIKH-SWGDA----FPIPNPDWDLILASDIL 157
N+ YN + N T A LP +K SWG A FP + ++D ILA+D++
Sbjct: 152 NLQYNISRNTKTKAKHLPQVKELSWGVALDKNFPRASINFDYILAADVV 200
|
|
Prediction of Enzyme Commission (EC) Number
EC Number Prediction by Annotation Transfer from SWISS-PROT Entries
Original result of BLAST against SWISS-PROT
No confident hit for EC number transfering in SWISSPROT detected by BLAST
EC Number Prediction by Ezypred Server
Original result from Ezypred Server
Fail to connect to Ezypred Server
EC Number Prediction by EFICAz Software
| Prediction Level | EC number | Confidence of Prediction |
| 3rd Layer | 2.1.1 | LOW CONFIDENCE prediction! |
Prediction of Functionally Associated Proteins
Functionally Associated Proteins Detected by STRING
Original result from the STRING server
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 | gw1.VI.1141.1 | hypothetical protein (242 aa) | |||||||||
(Populus trichocarpa) | |||||||||||
Predicted Functional Partners: | |||||||||||
| Sorry, there are no predicted associations at the current settings. | |||||||||||
Conserved Domains and Related Protein Families
Conserved Domains Detected by RPS-BLAST
Original result of RPS-BLAST against CDD database part I
| ID | Alignment Graph | Length |
Definition |
E-value |
| Query | 244 | |||
| COG3897 | 218 | COG3897, COG3897, Predicted methyltransferase [Gen | 4e-11 | |
| pfam10294 | 170 | pfam10294, Methyltransf_16, Putative methyltransfe | 4e-09 | |
| COG2890 | 280 | COG2890, HemK, Methylase of polypeptide chain rele | 7e-05 | |
| pfam08242 | 98 | pfam08242, Methyltransf_12, Methyltransferase doma | 0.002 |
| >gnl|CDD|226413 COG3897, COG3897, Predicted methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Score = 60.5 bits (147), Expect = 4e-11
Identities = 32/121 (26%), Positives = 53/121 (43%), Gaps = 11/121 (9%)
Query: 37 QFPEMELVIREFAFHQLNANFLWPGTFSFAEWLMHHREWIERRRCIELGSGTGALAIFLR 96
+ EL R F W G A ++ H E + +R ++LG+G+G +AI
Sbjct: 41 DRAKEEL--RLIGLPPPFWAFAWAGGQVLARYIDDHPETVRGKRVLDLGAGSGLVAIAAA 98
Query: 97 KAMNLDITTSDYNDQEIEDNIAYNSTTNGITPALPHIKHSWGDAFPI-PNPDWDLILASD 155
+A ++ +D D +E I N+ NG++ H I P +DL+LA D
Sbjct: 99 RAGAAEVVAADI-DPWLEQAIRLNAAANGVSILFTHAD-------LIGSPPAFDLLLAGD 150
Query: 156 I 156
+
Sbjct: 151 L 151
|
Length = 218 |
| >gnl|CDD|220679 pfam10294, Methyltransf_16, Putative methyltransferase | Back alignment and domain information |
|---|
Score = 53.9 bits (130), Expect = 4e-09
Identities = 38/179 (21%), Positives = 66/179 (36%), Gaps = 42/179 (23%)
Query: 58 LWPGTFSFAEWLMH----HREWIERRRCIELGSGTGALAIFLRKAM-NLDITTSDYNDQE 112
+W +++L + +ELGSGTG + I + + +T +D +
Sbjct: 21 VWDAAVVLSKYLEMKITPGGNNLSGLNVLELGSGTGLVGIAVALLLPGASVTITDLEEAI 80
Query: 113 --IEDNIAYNSTTNGITP-ALPHIKHSWGDAFP---IPNPDWDLILASDILLYVKQYSNL 166
++ NI N ++ +T L WG+ P DLILA+D + + L
Sbjct: 81 ELMKKNIELNGLSSKVTAKVL-----DWGEDLPDDVFDPHPVDLILAADCVYNEDSFPLL 135
Query: 167 IKSLSVLLKSYKPKDSQVGHLTKNEQGEGTEGLPWPAFLMSWRRRIGKEDETIFFTSCE 225
K+L L E L+++++R +E E FF E
Sbjct: 136 EKTL--------------NDLLGKE----------TVILVAYKKR--REAEKRFFKLLE 168
|
Length = 170 |
| >gnl|CDD|225443 COG2890, HemK, Methylase of polypeptide chain release factors [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Score = 42.7 bits (101), Expect = 7e-05
Identities = 22/98 (22%), Positives = 41/98 (41%), Gaps = 13/98 (13%)
Query: 60 PGTFSFAEWLMHHREWIERRRCIELGSGTGALAIFLRKAM-NLDITTSDYNDQEIE---D 115
P T E + +++R ++LG+G+GA+AI L K + ++ D + + +
Sbjct: 94 PDTELLVEAALALLLQLDKR-ILDLGTGSGAIAIALAKEGPDAEVIAVDISPDALALARE 152
Query: 116 NIAYNSTTNGITPALPHIKHSWGDAFPIPNPDWDLILA 153
N N L + D F +DLI++
Sbjct: 153 NAERN--------GLVRVLVVQSDLFEPLRGKFDLIVS 182
|
Length = 280 |
| >gnl|CDD|219760 pfam08242, Methyltransf_12, Methyltransferase domain | Back alignment and domain information |
|---|
Score = 36.2 bits (84), Expect = 0.002
Identities = 21/95 (22%), Positives = 45/95 (47%), Gaps = 3/95 (3%)
Query: 82 IELGSGTGALAIFLRKAM-NLDITTSDYNDQEIEDNIAYNSTTNGITPALPHIKHSWGDA 140
+++G GTG L L +A+ L+ T D + +E + + + DA
Sbjct: 1 LDIGCGTGTLLRALLEALPGLEYTGVDISPAALEAAAERLAALGLLDAVRVRLDV--LDA 58
Query: 141 FPIPNPDWDLILASDILLYVKQYSNLIKSLSVLLK 175
+ +D+++AS++L ++ ++++L LLK
Sbjct: 59 IDLDPGSFDVVVASNVLHHLADPRAVLRNLRRLLK 93
|
Members of this family are SAM dependent methyltransferases. Length = 98 |
Conserved Domains Detected by HHsearch
Original result of HHsearch against CDD database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 244 | |||
| PF10294 | 173 | Methyltransf_16: Putative methyltransferase; Inter | 99.91 | |
| PF01209 | 233 | Ubie_methyltran: ubiE/COQ5 methyltransferase famil | 99.8 | |
| COG2226 | 238 | UbiE Methylase involved in ubiquinone/menaquinone | 99.79 | |
| COG4123 | 248 | Predicted O-methyltransferase [General function pr | 99.79 | |
| PTZ00098 | 263 | phosphoethanolamine N-methyltransferase; Provision | 99.79 | |
| PLN02244 | 340 | tocopherol O-methyltransferase | 99.78 | |
| TIGR00452 | 314 | methyltransferase, putative. Known examples to dat | 99.78 | |
| PF02353 | 273 | CMAS: Mycolic acid cyclopropane synthetase; InterP | 99.76 | |
| PLN02396 | 322 | hexaprenyldihydroxybenzoate methyltransferase | 99.76 | |
| COG2230 | 283 | Cfa Cyclopropane fatty acid synthase and related m | 99.75 | |
| PRK15068 | 322 | tRNA mo(5)U34 methyltransferase; Provisional | 99.75 | |
| PF12847 | 112 | Methyltransf_18: Methyltransferase domain; PDB: 3G | 99.75 | |
| PF05175 | 170 | MTS: Methyltransferase small domain; InterPro: IPR | 99.75 | |
| TIGR00537 | 179 | hemK_rel_arch HemK-related putative methylase. The | 99.74 | |
| PRK11036 | 255 | putative S-adenosyl-L-methionine-dependent methylt | 99.74 | |
| COG2264 | 300 | PrmA Ribosomal protein L11 methylase [Translation, | 99.73 | |
| PLN02233 | 261 | ubiquinone biosynthesis methyltransferase | 99.73 | |
| COG2227 | 243 | UbiG 2-polyprenyl-3-methyl-5-hydroxy-6-metoxy-1,4- | 99.72 | |
| PRK14966 | 423 | unknown domain/N5-glutamine S-adenosyl-L-methionin | 99.72 | |
| KOG3201 | 201 | consensus Uncharacterized conserved protein [Funct | 99.71 | |
| PF06325 | 295 | PrmA: Ribosomal protein L11 methyltransferase (Prm | 99.7 | |
| PLN02336 | 475 | phosphoethanolamine N-methyltransferase | 99.7 | |
| PF08003 | 315 | Methyltransf_9: Protein of unknown function (DUF16 | 99.7 | |
| PRK11207 | 197 | tellurite resistance protein TehB; Provisional | 99.7 | |
| PRK00107 | 187 | gidB 16S rRNA methyltransferase GidB; Reviewed | 99.68 | |
| PRK01544 | 506 | bifunctional N5-glutamine S-adenosyl-L-methionine- | 99.68 | |
| PRK15001 | 378 | SAM-dependent 23S ribosomal RNA mG1835 methyltrans | 99.67 | |
| PF08241 | 95 | Methyltransf_11: Methyltransferase domain; InterPr | 99.67 | |
| COG3897 | 218 | Predicted methyltransferase [General function pred | 99.67 | |
| KOG1270 | 282 | consensus Methyltransferases [Coenzyme transport a | 99.66 | |
| PRK11873 | 272 | arsM arsenite S-adenosylmethyltransferase; Reviewe | 99.66 | |
| PRK14103 | 255 | trans-aconitate 2-methyltransferase; Provisional | 99.66 | |
| PF13489 | 161 | Methyltransf_23: Methyltransferase domain; PDB: 3J | 99.66 | |
| PRK14968 | 188 | putative methyltransferase; Provisional | 99.66 | |
| PRK00517 | 250 | prmA ribosomal protein L11 methyltransferase; Revi | 99.66 | |
| TIGR00477 | 195 | tehB tellurite resistance protein TehB. Part of a | 99.66 | |
| smart00828 | 224 | PKS_MT Methyltransferase in polyketide synthase (P | 99.65 | |
| PRK11705 | 383 | cyclopropane fatty acyl phospholipid synthase; Pro | 99.65 | |
| TIGR00406 | 288 | prmA ribosomal protein L11 methyltransferase. Ribo | 99.65 | |
| TIGR03533 | 284 | L3_gln_methyl protein-(glutamine-N5) methyltransfe | 99.65 | |
| TIGR02752 | 231 | MenG_heptapren 2-heptaprenyl-1,4-naphthoquinone me | 99.65 | |
| PRK14967 | 223 | putative methyltransferase; Provisional | 99.65 | |
| TIGR00536 | 284 | hemK_fam HemK family putative methylases. The gene | 99.65 | |
| KOG1540 | 296 | consensus Ubiquinone biosynthesis methyltransferas | 99.64 | |
| PF13847 | 152 | Methyltransf_31: Methyltransferase domain; PDB: 3T | 99.64 | |
| PRK08287 | 187 | cobalt-precorrin-6Y C(15)-methyltransferase; Valid | 99.64 | |
| PLN02490 | 340 | MPBQ/MSBQ methyltransferase | 99.63 | |
| COG2890 | 280 | HemK Methylase of polypeptide chain release factor | 99.63 | |
| PRK10258 | 251 | biotin biosynthesis protein BioC; Provisional | 99.62 | |
| PRK09489 | 342 | rsmC 16S ribosomal RNA m2G1207 methyltransferase; | 99.62 | |
| COG2813 | 300 | RsmC 16S RNA G1207 methylase RsmC [Translation, ri | 99.62 | |
| TIGR00138 | 181 | gidB 16S rRNA methyltransferase GidB. GidB (glucos | 99.61 | |
| TIGR02021 | 219 | BchM-ChlM magnesium protoporphyrin O-methyltransfe | 99.61 | |
| PF07021 | 193 | MetW: Methionine biosynthesis protein MetW; InterP | 99.61 | |
| PRK11805 | 307 | N5-glutamine S-adenosyl-L-methionine-dependent met | 99.61 | |
| PRK08317 | 241 | hypothetical protein; Provisional | 99.61 | |
| TIGR03704 | 251 | PrmC_rel_meth putative protein-(glutamine-N5) meth | 99.61 | |
| PRK04266 | 226 | fibrillarin; Provisional | 99.61 | |
| PRK00377 | 198 | cbiT cobalt-precorrin-6Y C(15)-methyltransferase; | 99.6 | |
| TIGR02469 | 124 | CbiT precorrin-6Y C5,15-methyltransferase (decarbo | 99.6 | |
| PRK09328 | 275 | N5-glutamine S-adenosyl-L-methionine-dependent met | 99.59 | |
| PRK12335 | 287 | tellurite resistance protein TehB; Provisional | 99.58 | |
| PRK05134 | 233 | bifunctional 3-demethylubiquinone-9 3-methyltransf | 99.58 | |
| PRK01683 | 258 | trans-aconitate 2-methyltransferase; Provisional | 99.57 | |
| PRK00121 | 202 | trmB tRNA (guanine-N(7)-)-methyltransferase; Revie | 99.57 | |
| PRK15451 | 247 | tRNA cmo(5)U34 methyltransferase; Provisional | 99.57 | |
| PF13659 | 117 | Methyltransf_26: Methyltransferase domain; PDB: 3G | 99.57 | |
| TIGR02716 | 306 | C20_methyl_CrtF C-20 methyltransferase BchU. Membe | 99.56 | |
| PRK00216 | 239 | ubiE ubiquinone/menaquinone biosynthesis methyltra | 99.56 | |
| PF13649 | 101 | Methyltransf_25: Methyltransferase domain; PDB: 3B | 99.55 | |
| TIGR03534 | 251 | RF_mod_PrmC protein-(glutamine-N5) methyltransfera | 99.54 | |
| PF08242 | 99 | Methyltransf_12: Methyltransferase domain; InterPr | 99.54 | |
| TIGR01983 | 224 | UbiG ubiquinone biosynthesis O-methyltransferase. | 99.54 | |
| PLN02585 | 315 | magnesium protoporphyrin IX methyltransferase | 99.53 | |
| PRK13944 | 205 | protein-L-isoaspartate O-methyltransferase; Provis | 99.53 | |
| COG2263 | 198 | Predicted RNA methylase [Translation, ribosomal st | 99.52 | |
| TIGR00740 | 239 | methyltransferase, putative. A simple BLAST search | 99.52 | |
| TIGR01177 | 329 | conserved hypothetical protein TIGR01177. This fam | 99.52 | |
| PRK06202 | 232 | hypothetical protein; Provisional | 99.52 | |
| PRK07580 | 230 | Mg-protoporphyrin IX methyl transferase; Validated | 99.52 | |
| TIGR01934 | 223 | MenG_MenH_UbiE ubiquinone/menaquinone biosynthesis | 99.51 | |
| PF03848 | 192 | TehB: Tellurite resistance protein TehB; InterPro: | 99.5 | |
| COG2242 | 187 | CobL Precorrin-6B methylase 2 [Coenzyme metabolism | 99.5 | |
| PF06080 | 204 | DUF938: Protein of unknown function (DUF938); Inte | 99.49 | |
| PLN02336 | 475 | phosphoethanolamine N-methyltransferase | 99.48 | |
| COG4976 | 287 | Predicted methyltransferase (contains TPR repeat) | 99.48 | |
| PRK07402 | 196 | precorrin-6B methylase; Provisional | 99.48 | |
| KOG4300 | 252 | consensus Predicted methyltransferase [General fun | 99.47 | |
| TIGR03587 | 204 | Pse_Me-ase pseudaminic acid biosynthesis-associate | 99.47 | |
| TIGR02072 | 240 | BioC biotin biosynthesis protein BioC. This enzyme | 99.46 | |
| TIGR03840 | 213 | TMPT_Se_Te thiopurine S-methyltransferase, Se/Te d | 99.45 | |
| PF05401 | 201 | NodS: Nodulation protein S (NodS); InterPro: IPR00 | 99.45 | |
| TIGR00080 | 215 | pimt protein-L-isoaspartate(D-aspartate) O-methylt | 99.45 | |
| PLN02672 | 1082 | methionine S-methyltransferase | 99.45 | |
| KOG1271 | 227 | consensus Methyltransferases [General function pre | 99.45 | |
| PRK06922 | 677 | hypothetical protein; Provisional | 99.45 | |
| PRK13168 | 443 | rumA 23S rRNA m(5)U1939 methyltransferase; Reviewe | 99.45 | |
| PRK13942 | 212 | protein-L-isoaspartate O-methyltransferase; Provis | 99.44 | |
| smart00138 | 264 | MeTrc Methyltransferase, chemotaxis proteins. Meth | 99.44 | |
| PRK05785 | 226 | hypothetical protein; Provisional | 99.42 | |
| PRK11783 | 702 | rlmL 23S rRNA m(2)G2445 methyltransferase; Provisi | 99.42 | |
| PHA03411 | 279 | putative methyltransferase; Provisional | 99.41 | |
| KOG2904 | 328 | consensus Predicted methyltransferase [General fun | 99.4 | |
| PRK11727 | 321 | 23S rRNA mA1618 methyltransferase; Provisional | 99.39 | |
| TIGR02081 | 194 | metW methionine biosynthesis protein MetW. This pr | 99.39 | |
| PRK10909 | 199 | rsmD 16S rRNA m(2)G966-methyltransferase; Provisio | 99.39 | |
| PTZ00146 | 293 | fibrillarin; Provisional | 99.38 | |
| TIGR00091 | 194 | tRNA (guanine-N(7)-)-methyltransferase. In E. coli | 99.38 | |
| PRK13255 | 218 | thiopurine S-methyltransferase; Reviewed | 99.36 | |
| KOG1541 | 270 | consensus Predicted protein carboxyl methylase [Ge | 99.36 | |
| PRK00312 | 212 | pcm protein-L-isoaspartate O-methyltransferase; Re | 99.36 | |
| PRK15128 | 396 | 23S rRNA m(5)C1962 methyltransferase; Provisional | 99.35 | |
| PRK03522 | 315 | rumB 23S rRNA methyluridine methyltransferase; Rev | 99.35 | |
| PRK11088 | 272 | rrmA 23S rRNA methyltransferase A; Provisional | 99.34 | |
| TIGR03438 | 301 | probable methyltransferase. This model represents | 99.33 | |
| PLN03075 | 296 | nicotianamine synthase; Provisional | 99.33 | |
| TIGR02085 | 374 | meth_trns_rumB 23S rRNA (uracil-5-)-methyltransfer | 99.33 | |
| COG2518 | 209 | Pcm Protein-L-isoaspartate carboxylmethyltransfera | 99.32 | |
| PF05219 | 265 | DREV: DREV methyltransferase; InterPro: IPR007884 | 99.31 | |
| KOG2361 | 264 | consensus Predicted methyltransferase [General fun | 99.31 | |
| COG4106 | 257 | Tam Trans-aconitate methyltransferase [General fun | 99.31 | |
| PRK11188 | 209 | rrmJ 23S rRNA methyltransferase J; Provisional | 99.3 | |
| PRK10901 | 427 | 16S rRNA methyltransferase B; Provisional | 99.29 | |
| PLN02781 | 234 | Probable caffeoyl-CoA O-methyltransferase | 99.29 | |
| PRK14902 | 444 | 16S rRNA methyltransferase B; Provisional | 99.29 | |
| COG2519 | 256 | GCD14 tRNA(1-methyladenosine) methyltransferase an | 99.25 | |
| PRK14121 | 390 | tRNA (guanine-N(7)-)-methyltransferase; Provisiona | 99.25 | |
| TIGR00438 | 188 | rrmJ cell division protein FtsJ. | 99.24 | |
| COG2521 | 287 | Predicted archaeal methyltransferase [General func | 99.24 | |
| TIGR00479 | 431 | rumA 23S rRNA (uracil-5-)-methyltransferase RumA. | 99.24 | |
| cd02440 | 107 | AdoMet_MTases S-adenosylmethionine-dependent methy | 99.24 | |
| KOG1499 | 346 | consensus Protein arginine N-methyltransferase PRM | 99.23 | |
| TIGR00095 | 189 | RNA methyltransferase, RsmD family. This model rep | 99.23 | |
| PRK13943 | 322 | protein-L-isoaspartate O-methyltransferase; Provis | 99.22 | |
| PRK14901 | 434 | 16S rRNA methyltransferase B; Provisional | 99.21 | |
| KOG2793 | 248 | consensus Putative N2,N2-dimethylguanosine tRNA me | 99.21 | |
| PF01135 | 209 | PCMT: Protein-L-isoaspartate(D-aspartate) O-methyl | 99.2 | |
| PRK14903 | 431 | 16S rRNA methyltransferase B; Provisional | 99.19 | |
| TIGR00478 | 228 | tly hemolysin TlyA family protein. Hemolysins are | 99.18 | |
| PF08704 | 247 | GCD14: tRNA methyltransferase complex GCD14 subuni | 99.18 | |
| PRK04457 | 262 | spermidine synthase; Provisional | 99.18 | |
| PHA03412 | 241 | putative methyltransferase; Provisional | 99.17 | |
| TIGR00563 | 426 | rsmB ribosomal RNA small subunit methyltransferase | 99.16 | |
| PRK14904 | 445 | 16S rRNA methyltransferase B; Provisional | 99.16 | |
| smart00650 | 169 | rADc Ribosomal RNA adenine dimethylases. | 99.13 | |
| TIGR00446 | 264 | nop2p NOL1/NOP2/sun family putative RNA methylase. | 99.12 | |
| PF05724 | 218 | TPMT: Thiopurine S-methyltransferase (TPMT); Inter | 99.12 | |
| KOG3010 | 261 | consensus Methyltransferase [General function pred | 99.11 | |
| KOG3420 | 185 | consensus Predicted RNA methylase [Translation, ri | 99.11 | |
| KOG1500 | 517 | consensus Protein arginine N-methyltransferase CAR | 99.1 | |
| KOG3191 | 209 | consensus Predicted N6-DNA-methyltransferase [Tran | 99.1 | |
| PRK05031 | 362 | tRNA (uracil-5-)-methyltransferase; Validated | 99.09 | |
| PLN02476 | 278 | O-methyltransferase | 99.07 | |
| PF03602 | 183 | Cons_hypoth95: Conserved hypothetical protein 95; | 99.06 | |
| PRK03612 | 521 | spermidine synthase; Provisional | 99.06 | |
| PF00891 | 241 | Methyltransf_2: O-methyltransferase; InterPro: IPR | 99.06 | |
| COG1092 | 393 | Predicted SAM-dependent methyltransferases [Genera | 99.06 | |
| COG4122 | 219 | Predicted O-methyltransferase [General function pr | 99.06 | |
| PRK00811 | 283 | spermidine synthase; Provisional | 99.05 | |
| COG0742 | 187 | N6-adenine-specific methylase [DNA replication, re | 99.04 | |
| PF03291 | 331 | Pox_MCEL: mRNA capping enzyme; InterPro: IPR004971 | 99.04 | |
| PRK13256 | 226 | thiopurine S-methyltransferase; Reviewed | 99.02 | |
| KOG2899 | 288 | consensus Predicted methyltransferase [General fun | 99.02 | |
| PRK04148 | 134 | hypothetical protein; Provisional | 98.98 | |
| KOG1975 | 389 | consensus mRNA cap methyltransferase [RNA processi | 98.97 | |
| COG2265 | 432 | TrmA SAM-dependent methyltransferases related to t | 98.97 | |
| COG1041 | 347 | Predicted DNA modification methylase [DNA replicat | 98.97 | |
| PF10672 | 286 | Methyltrans_SAM: S-adenosylmethionine-dependent me | 98.96 | |
| TIGR02143 | 353 | trmA_only tRNA (uracil-5-)-methyltransferase. This | 98.96 | |
| PF01596 | 205 | Methyltransf_3: O-methyltransferase; InterPro: IPR | 98.96 | |
| TIGR00417 | 270 | speE spermidine synthase. the SpeE subunit of sper | 98.96 | |
| PF05891 | 218 | Methyltransf_PK: AdoMet dependent proline di-methy | 98.94 | |
| PLN02232 | 160 | ubiquinone biosynthesis methyltransferase | 98.94 | |
| PF02475 | 200 | Met_10: Met-10+ like-protein; InterPro: IPR003402 | 98.89 | |
| PRK04338 | 382 | N(2),N(2)-dimethylguanosine tRNA methyltransferase | 98.89 | |
| PRK14896 | 258 | ksgA 16S ribosomal RNA methyltransferase KsgA/Dim1 | 98.88 | |
| COG3963 | 194 | Phospholipid N-methyltransferase [Lipid metabolism | 98.87 | |
| PTZ00338 | 294 | dimethyladenosine transferase-like protein; Provis | 98.85 | |
| PF01170 | 179 | UPF0020: Putative RNA methylase family UPF0020; In | 98.85 | |
| PLN02589 | 247 | caffeoyl-CoA O-methyltransferase | 98.84 | |
| PRK00274 | 272 | ksgA 16S ribosomal RNA methyltransferase KsgA/Dim1 | 98.83 | |
| PLN02366 | 308 | spermidine synthase | 98.81 | |
| PF05958 | 352 | tRNA_U5-meth_tr: tRNA (Uracil-5-)-methyltransferas | 98.8 | |
| COG2520 | 341 | Predicted methyltransferase [General function pred | 98.8 | |
| PF05185 | 448 | PRMT5: PRMT5 arginine-N-methyltransferase; InterPr | 98.8 | |
| PF02527 | 184 | GidB: rRNA small subunit methyltransferase G; Inte | 98.79 | |
| PF05148 | 219 | Methyltransf_8: Hypothetical methyltransferase; In | 98.79 | |
| PRK01581 | 374 | speE spermidine synthase; Validated | 98.78 | |
| PRK10611 | 287 | chemotaxis methyltransferase CheR; Provisional | 98.78 | |
| TIGR00308 | 374 | TRM1 tRNA(guanine-26,N2-N2) methyltransferase. Thi | 98.73 | |
| KOG2940 | 325 | consensus Predicted methyltransferase [General fun | 98.69 | |
| PF01739 | 196 | CheR: CheR methyltransferase, SAM binding domain; | 98.66 | |
| KOG2187 | 534 | consensus tRNA uracil-5-methyltransferase and rela | 98.65 | |
| TIGR00755 | 253 | ksgA dimethyladenosine transferase. Alternate name | 98.64 | |
| KOG3987 | 288 | consensus Uncharacterized conserved protein DREV/C | 98.64 | |
| PF11968 | 219 | DUF3321: Putative methyltransferase (DUF3321); Int | 98.64 | |
| COG1352 | 268 | CheR Methylase of chemotaxis methyl-accepting prot | 98.6 | |
| PF02390 | 195 | Methyltransf_4: Putative methyltransferase ; Inter | 98.6 | |
| PF02384 | 311 | N6_Mtase: N-6 DNA Methylase; InterPro: IPR003356 T | 98.58 | |
| PRK11933 | 470 | yebU rRNA (cytosine-C(5)-)-methyltransferase RsmF; | 98.57 | |
| KOG2920 | 282 | consensus Predicted methyltransferase [General fun | 98.57 | |
| COG1189 | 245 | Predicted rRNA methylase [Translation, ribosomal s | 98.57 | |
| PF12147 | 311 | Methyltransf_20: Putative methyltransferase; Inter | 98.56 | |
| PF01234 | 256 | NNMT_PNMT_TEMT: NNMT/PNMT/TEMT family; InterPro: I | 98.55 | |
| PF05971 | 299 | Methyltransf_10: Protein of unknown function (DUF8 | 98.55 | |
| COG0357 | 215 | GidB Predicted S-adenosylmethionine-dependent meth | 98.55 | |
| PRK11783 | 702 | rlmL 23S rRNA m(2)G2445 methyltransferase; Provisi | 98.49 | |
| PF09445 | 163 | Methyltransf_15: RNA cap guanine-N2 methyltransfer | 98.48 | |
| PLN02823 | 336 | spermine synthase | 98.47 | |
| PF03141 | 506 | Methyltransf_29: Putative S-adenosyl-L-methionine- | 98.47 | |
| KOG3045 | 325 | consensus Predicted RNA methylase involved in rRNA | 98.46 | |
| KOG3178 | 342 | consensus Hydroxyindole-O-methyltransferase and re | 98.43 | |
| KOG1661 | 237 | consensus Protein-L-isoaspartate(D-aspartate) O-me | 98.39 | |
| TIGR02987 | 524 | met_A_Alw26 type II restriction m6 adenine DNA met | 98.36 | |
| KOG0820 | 315 | consensus Ribosomal RNA adenine dimethylase [RNA p | 98.36 | |
| COG0220 | 227 | Predicted S-adenosylmethionine-dependent methyltra | 98.34 | |
| PF13679 | 141 | Methyltransf_32: Methyltransferase domain | 98.34 | |
| PF07942 | 270 | N2227: N2227-like protein; InterPro: IPR012901 Thi | 98.33 | |
| KOG1663 | 237 | consensus O-methyltransferase [Secondary metabolit | 98.29 | |
| PF08123 | 205 | DOT1: Histone methylation protein DOT1 ; InterPro: | 98.27 | |
| KOG1709 | 271 | consensus Guanidinoacetate methyltransferase and r | 98.26 | |
| PF09243 | 274 | Rsm22: Mitochondrial small ribosomal subunit Rsm22 | 98.25 | |
| COG0030 | 259 | KsgA Dimethyladenosine transferase (rRNA methylati | 98.23 | |
| COG0144 | 355 | Sun tRNA and rRNA cytosine-C5-methylases [Translat | 98.19 | |
| PRK00536 | 262 | speE spermidine synthase; Provisional | 98.18 | |
| PF04816 | 205 | DUF633: Family of unknown function (DUF633) ; Inte | 98.18 | |
| COG0116 | 381 | Predicted N6-adenine-specific DNA methylase [DNA r | 98.16 | |
| COG0421 | 282 | SpeE Spermidine synthase [Amino acid transport and | 98.13 | |
| KOG1269 | 364 | consensus SAM-dependent methyltransferases [Lipid | 98.12 | |
| COG4076 | 252 | Predicted RNA methylase [General function predicti | 98.11 | |
| KOG2915 | 314 | consensus tRNA(1-methyladenosine) methyltransferas | 98.09 | |
| TIGR03439 | 319 | methyl_EasF probable methyltransferase domain, Eas | 98.06 | |
| PRK00050 | 296 | 16S rRNA m(4)C1402 methyltranserfase; Provisional | 98.06 | |
| COG0500 | 257 | SmtA SAM-dependent methyltransferases [Secondary m | 98.02 | |
| PF01564 | 246 | Spermine_synth: Spermine/spermidine synthase; Inte | 98.02 | |
| PRK01544 | 506 | bifunctional N5-glutamine S-adenosyl-L-methionine- | 97.97 | |
| PF01728 | 181 | FtsJ: FtsJ-like methyltransferase; InterPro: IPR00 | 97.96 | |
| COG0293 | 205 | FtsJ 23S rRNA methylase [Translation, ribosomal st | 97.91 | |
| PRK10742 | 250 | putative methyltransferase; Provisional | 97.89 | |
| PRK11760 | 357 | putative 23S rRNA C2498 ribose 2'-O-ribose methylt | 97.84 | |
| TIGR01444 | 143 | fkbM_fam methyltransferase, FkbM family. Members o | 97.84 | |
| KOG2730 | 263 | consensus Methylase [General function prediction o | 97.79 | |
| PF01861 | 243 | DUF43: Protein of unknown function DUF43; InterPro | 97.78 | |
| KOG1501 | 636 | consensus Arginine N-methyltransferase [General fu | 97.77 | |
| COG1889 | 231 | NOP1 Fibrillarin-like rRNA methylase [Translation, | 97.67 | |
| PF01269 | 229 | Fibrillarin: Fibrillarin; InterPro: IPR000692 Fibr | 97.6 | |
| PF00398 | 262 | RrnaAD: Ribosomal RNA adenine dimethylase; InterPr | 97.59 | |
| PHA01634 | 156 | hypothetical protein | 97.59 | |
| COG2384 | 226 | Predicted SAM-dependent methyltransferase [General | 97.43 | |
| KOG2798 | 369 | consensus Putative trehalase [Carbohydrate transpo | 97.42 | |
| KOG2352 | 482 | consensus Predicted spermine/spermidine synthase [ | 97.36 | |
| PF01189 | 283 | Nol1_Nop2_Fmu: NOL1/NOP2/sun family; InterPro: IPR | 97.36 | |
| COG1064 | 339 | AdhP Zn-dependent alcohol dehydrogenases [General | 97.25 | |
| KOG1331 | 293 | consensus Predicted methyltransferase [General fun | 97.24 | |
| PF02005 | 377 | TRM: N2,N2-dimethylguanosine tRNA methyltransferas | 97.22 | |
| cd00315 | 275 | Cyt_C5_DNA_methylase Cytosine-C5 specific DNA meth | 97.19 | |
| COG3129 | 292 | Predicted SAM-dependent methyltransferase [General | 97.16 | |
| PF03059 | 276 | NAS: Nicotianamine synthase protein; InterPro: IPR | 97.15 | |
| COG0286 | 489 | HsdM Type I restriction-modification system methyl | 97.13 | |
| COG5459 | 484 | Predicted rRNA methylase [Translation, ribosomal s | 97.09 | |
| PF06962 | 140 | rRNA_methylase: Putative rRNA methylase; InterPro: | 97.06 | |
| COG4627 | 185 | Uncharacterized protein conserved in bacteria [Fun | 97.05 | |
| COG4262 | 508 | Predicted spermidine synthase with an N-terminal m | 97.04 | |
| PF13578 | 106 | Methyltransf_24: Methyltransferase domain; PDB: 3S | 96.97 | |
| PF03141 | 506 | Methyltransf_29: Putative S-adenosyl-L-methionine- | 96.92 | |
| COG1867 | 380 | TRM1 N2,N2-dimethylguanosine tRNA methyltransferas | 96.69 | |
| KOG2671 | 421 | consensus Putative RNA methylase [Replication, rec | 96.54 | |
| KOG1122 | 460 | consensus tRNA and rRNA cytosine-C5-methylase (nuc | 96.43 | |
| KOG2497 | 262 | consensus Predicted methyltransferase [General fun | 96.38 | |
| PF03269 | 177 | DUF268: Caenorhabditis protein of unknown function | 96.33 | |
| PF07091 | 251 | FmrO: Ribosomal RNA methyltransferase (FmrO); PDB: | 96.25 | |
| KOG0024 | 354 | consensus Sorbitol dehydrogenase [Secondary metabo | 96.23 | |
| PRK01747 | 662 | mnmC bifunctional tRNA (mnm(5)s(2)U34)-methyltrans | 96.2 | |
| KOG2198 | 375 | consensus tRNA cytosine-5-methylases and related e | 96.16 | |
| PRK09424 | 509 | pntA NAD(P) transhydrogenase subunit alpha; Provis | 96.15 | |
| KOG2078 | 495 | consensus tRNA modification enzyme [RNA processing | 96.12 | |
| COG4798 | 238 | Predicted methyltransferase [General function pred | 96.11 | |
| KOG1596 | 317 | consensus Fibrillarin and related nucleolar RNA-bi | 96.08 | |
| KOG1227 | 351 | consensus Putative methyltransferase [General func | 96.07 | |
| KOG1253 | 525 | consensus tRNA methyltransferase [Translation, rib | 96.05 | |
| PRK09880 | 343 | L-idonate 5-dehydrogenase; Provisional | 95.86 | |
| COG1568 | 354 | Predicted methyltransferases [General function pre | 95.84 | |
| TIGR02822 | 329 | adh_fam_2 zinc-binding alcohol dehydrogenase famil | 95.83 | |
| PF04989 | 206 | CmcI: Cephalosporin hydroxylase; InterPro: IPR0070 | 95.79 | |
| KOG4058 | 199 | consensus Uncharacterized conserved protein [Funct | 95.73 | |
| PF04445 | 234 | SAM_MT: Putative SAM-dependent methyltransferase; | 95.71 | |
| PF11599 | 246 | AviRa: RRNA methyltransferase AviRa; InterPro: IPR | 95.6 | |
| PF02636 | 252 | Methyltransf_28: Putative S-adenosyl-L-methionine- | 95.59 | |
| KOG2651 | 476 | consensus rRNA adenine N-6-methyltransferase [RNA | 95.42 | |
| COG1565 | 370 | Uncharacterized conserved protein [Function unknow | 95.41 | |
| PF01555 | 231 | N6_N4_Mtase: DNA methylase; InterPro: IPR002941 Th | 95.41 | |
| PRK11524 | 284 | putative methyltransferase; Provisional | 95.39 | |
| PRK15001 | 378 | SAM-dependent 23S ribosomal RNA mG1835 methyltrans | 95.25 | |
| COG0270 | 328 | Dcm Site-specific DNA methylase [DNA replication, | 95.1 | |
| COG1063 | 350 | Tdh Threonine dehydrogenase and related Zn-depende | 95.08 | |
| TIGR01202 | 308 | bchC 2-desacetyl-2-hydroxyethyl bacteriochlorophyl | 94.97 | |
| PF04672 | 267 | Methyltransf_19: S-adenosyl methyltransferase; Int | 94.86 | |
| KOG3115 | 249 | consensus Methyltransferase-like protein [General | 94.76 | |
| PF07757 | 112 | AdoMet_MTase: Predicted AdoMet-dependent methyltra | 94.64 | |
| PF10354 | 166 | DUF2431: Domain of unknown function (DUF2431); Int | 94.62 | |
| TIGR00006 | 305 | S-adenosyl-methyltransferase MraW. Genetics paper | 94.6 | |
| PRK13699 | 227 | putative methylase; Provisional | 94.53 | |
| PLN02668 | 386 | indole-3-acetate carboxyl methyltransferase | 94.38 | |
| PF03492 | 334 | Methyltransf_7: SAM dependent carboxyl methyltrans | 94.33 | |
| cd05188 | 271 | MDR Medium chain reductase/dehydrogenase (MDR)/zin | 94.22 | |
| KOG2912 | 419 | consensus Predicted DNA methylase [Function unknow | 94.19 | |
| cd08237 | 341 | ribitol-5-phosphate_DH ribitol-5-phosphate dehydro | 94.11 | |
| cd08254 | 338 | hydroxyacyl_CoA_DH 6-hydroxycyclohex-1-ene-1-carbo | 93.95 | |
| PRK10458 | 467 | DNA cytosine methylase; Provisional | 93.9 | |
| PF06859 | 110 | Bin3: Bicoid-interacting protein 3 (Bin3); InterPr | 93.8 | |
| PRK13699 | 227 | putative methylase; Provisional | 93.38 | |
| COG4301 | 321 | Uncharacterized conserved protein [Function unknow | 93.12 | |
| cd08239 | 339 | THR_DH_like L-threonine dehydrogenase (TDH)-like. | 92.95 | |
| PF00107 | 130 | ADH_zinc_N: Zinc-binding dehydrogenase; InterPro: | 92.95 | |
| KOG2539 | 491 | consensus Mitochondrial/chloroplast ribosome small | 92.67 | |
| KOG4589 | 232 | consensus Cell division protein FtsJ [Cell cycle c | 92.63 | |
| TIGR03366 | 280 | HpnZ_proposed putative phosphonate catabolism asso | 92.39 | |
| cd08230 | 355 | glucose_DH Glucose dehydrogenase. Glucose dehydrog | 92.31 | |
| PF00145 | 335 | DNA_methylase: C-5 cytosine-specific DNA methylase | 91.87 | |
| TIGR00675 | 315 | dcm DNA-methyltransferase (dcm). All proteins in t | 91.63 | |
| PF11899 | 380 | DUF3419: Protein of unknown function (DUF3419); In | 91.52 | |
| TIGR00497 | 501 | hsdM type I restriction system adenine methylase ( | 91.46 | |
| PLN03154 | 348 | putative allyl alcohol dehydrogenase; Provisional | 91.24 | |
| KOG1099 | 294 | consensus SAM-dependent methyltransferase/cell div | 91.21 | |
| TIGR03451 | 358 | mycoS_dep_FDH mycothiol-dependent formaldehyde deh | 91.18 | |
| cd08281 | 371 | liver_ADH_like1 Zinc-dependent alcohol dehydrogena | 90.54 | |
| cd08232 | 339 | idonate-5-DH L-idonate 5-dehydrogenase. L-idonate | 90.34 | |
| KOG1562 | 337 | consensus Spermidine synthase [Amino acid transpor | 90.2 | |
| TIGR00561 | 511 | pntA NAD(P) transhydrogenase, alpha subunit. In so | 89.74 | |
| COG0604 | 326 | Qor NADPH:quinone reductase and related Zn-depende | 89.25 | |
| COG1255 | 129 | Uncharacterized protein conserved in archaea [Func | 89.22 | |
| PF05206 | 259 | TRM13: Methyltransferase TRM13; InterPro: IPR00787 | 89.18 | |
| PF03686 | 127 | UPF0146: Uncharacterised protein family (UPF0146); | 88.88 | |
| PRK05786 | 238 | fabG 3-ketoacyl-(acyl-carrier-protein) reductase; | 88.41 | |
| PF08468 | 155 | MTS_N: Methyltransferase small domain N-terminal; | 88.34 | |
| PLN02586 | 360 | probable cinnamyl alcohol dehydrogenase | 88.25 | |
| PRK11524 | 284 | putative methyltransferase; Provisional | 88.21 | |
| cd08245 | 330 | CAD Cinnamyl alcohol dehydrogenases (CAD) and rela | 87.97 | |
| cd08255 | 277 | 2-desacetyl-2-hydroxyethyl_bacteriochlorophyllide_ | 87.79 | |
| TIGR00027 | 260 | mthyl_TIGR00027 methyltransferase, putative, TIGR0 | 87.69 | |
| PF05430 | 124 | Methyltransf_30: S-adenosyl-L-methionine-dependent | 87.56 | |
| TIGR02825 | 325 | B4_12hDH leukotriene B4 12-hydroxydehydrogenase/15 | 87.56 | |
| cd01842 | 183 | SGNH_hydrolase_like_5 SGNH_hydrolase subfamily. SG | 87.52 | |
| cd08294 | 329 | leukotriene_B4_DH_like 13-PGR is a bifunctional en | 87.44 | |
| PF01795 | 310 | Methyltransf_5: MraW methylase family; InterPro: I | 87.38 | |
| PRK09489 | 342 | rsmC 16S ribosomal RNA m2G1207 methyltransferase; | 87.0 | |
| cd08295 | 338 | double_bond_reductase_like Arabidopsis alkenal dou | 86.92 | |
| PF07279 | 218 | DUF1442: Protein of unknown function (DUF1442); In | 86.85 | |
| KOG3924 | 419 | consensus Putative protein methyltransferase invol | 86.7 | |
| cd08293 | 345 | PTGR2 Prostaglandin reductase. Prostaglandins and | 85.51 | |
| cd08283 | 386 | FDH_like_1 Glutathione-dependent formaldehyde dehy | 85.47 | |
| KOG0023 | 360 | consensus Alcohol dehydrogenase, class V [Secondar | 84.55 | |
| cd08234 | 334 | threonine_DH_like L-threonine dehydrogenase. L-thr | 84.3 | |
| cd08298 | 329 | CAD2 Cinnamyl alcohol dehydrogenases (CAD). These | 84.27 | |
| KOG1209 | 289 | consensus 1-Acyl dihydroxyacetone phosphate reduct | 84.21 | |
| PRK01438 | 480 | murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn | 83.84 | |
| COG0275 | 314 | Predicted S-adenosylmethionine-dependent methyltra | 83.39 | |
| cd05285 | 343 | sorbitol_DH Sorbitol dehydrogenase. Sorbitol and a | 83.18 | |
| PF11899 | 380 | DUF3419: Protein of unknown function (DUF3419); In | 82.75 | |
| PF02086 | 260 | MethyltransfD12: D12 class N6 adenine-specific DNA | 82.57 | |
| COG0677 | 436 | WecC UDP-N-acetyl-D-mannosaminuronate dehydrogenas | 82.48 | |
| PF02737 | 180 | 3HCDH_N: 3-hydroxyacyl-CoA dehydrogenase, NAD bind | 82.41 | |
| cd08261 | 337 | Zn_ADH7 Alcohol dehydrogenases of the MDR family. | 82.39 | |
| cd08296 | 333 | CAD_like Cinnamyl alcohol dehydrogenases (CAD). Ci | 82.09 | |
| KOG1098 | 780 | consensus Putative SAM-dependent rRNA methyltransf | 82.07 | |
| PF05050 | 167 | Methyltransf_21: Methyltransferase FkbM domain; In | 82.06 | |
| PLN02514 | 357 | cinnamyl-alcohol dehydrogenase | 81.57 | |
| COG0062 | 203 | Uncharacterized conserved protein [Function unknow | 81.48 | |
| PRK06701 | 290 | short chain dehydrogenase; Provisional | 81.29 | |
| PRK03369 | 488 | murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn | 81.25 | |
| PRK10309 | 347 | galactitol-1-phosphate dehydrogenase; Provisional | 80.87 | |
| PRK08324 | 681 | short chain dehydrogenase; Validated | 80.83 | |
| PF02153 | 258 | PDH: Prephenate dehydrogenase; InterPro: IPR003099 | 80.76 | |
| cd05278 | 347 | FDH_like Formaldehyde dehydrogenases. Formaldehyde | 80.59 | |
| PRK05708 | 305 | 2-dehydropantoate 2-reductase; Provisional | 80.57 | |
| PRK08265 | 261 | short chain dehydrogenase; Provisional | 80.52 | |
| cd08242 | 319 | MDR_like Medium chain dehydrogenases/reductase (MD | 80.14 |
| >PF10294 Methyltransf_16: Putative methyltransferase; InterPro: IPR019410 There are a number of unidentified genes that have a high probability of coding for methyltransferases | Back alignment and domain information |
|---|
Probab=99.91 E-value=7.1e-24 Score=163.21 Aligned_cols=158 Identities=27% Similarity=0.460 Sum_probs=93.7
Q ss_pred ceEEEEecccCCCCcceeechHHHHHHHHhhc------cCcccCCeEEEeCCCCcHHHHHHHHh-CCCeEEEEeCChHHH
Q 026036 41 MELVIREFAFHQLNANFLWPGTFSFAEWLMHH------REWIERRRCIELGSGTGALAIFLRKA-MNLDITTSDYNDQEI 113 (244)
Q Consensus 41 ~~~~~~~~~~~~~~~~~~w~~~~~l~~~~~~~------~~~~~~~~VLdlG~G~G~~~~~~a~~-~~~~v~~~D~~~~~l 113 (244)
..+.+++..... +|..+||++..|++|+... ....++.+|||||||+|..|+.++.. ...+|++||.++ .+
T Consensus 4 ~~l~i~e~~~~~-~G~~vW~aa~~La~~l~~~~~~~~~~~~~~~~~VLELGaG~Gl~gi~~a~~~~~~~Vv~TD~~~-~l 81 (173)
T PF10294_consen 4 KTLQIEEDWGDG-TGGKVWPAALVLARYLLSHSESEFNPELFRGKRVLELGAGTGLPGIAAAKLFGAARVVLTDYNE-VL 81 (173)
T ss_dssp --------------------HHHHHHHHHHH-------GGGTTTSEEEETT-TTSHHHHHHHHT-T-SEEEEEE-S--HH
T ss_pred cccccccccccC-CcEEEechHHHHHHHHHHhcccccchhhcCCceEEEECCccchhHHHHHhccCCceEEEeccch-hh
Confidence 466777766554 4899999999999999984 56778999999999999999999988 578999999998 55
Q ss_pred HHHHHHhHHhcC--CCCCcceEeeecCCCCC---CCCCCccEEEEcccccCCcChHHHHHHHHHHHHhcCCCCceEeecc
Q 026036 114 EDNIAYNSTTNG--ITPALPHIKHSWGDAFP---IPNPDWDLILASDILLYVKQYSNLIKSLSVLLKSYKPKDSQVGHLT 188 (244)
Q Consensus 114 ~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~---~~~~~fD~I~~~~~l~~~~~~~~l~~~l~~~~~~lk~gG~~~~~~~ 188 (244)
+.++.|+..|. ...++....++|++... ....+||+|+++|++|.....+.+.++ +.++++++|.+++.
T Consensus 82 -~~l~~Ni~~N~~~~~~~v~v~~L~Wg~~~~~~~~~~~~~D~IlasDv~Y~~~~~~~L~~t---l~~ll~~~~~vl~~-- 155 (173)
T PF10294_consen 82 -ELLRRNIELNGSLLDGRVSVRPLDWGDELDSDLLEPHSFDVILASDVLYDEELFEPLVRT---LKRLLKPNGKVLLA-- 155 (173)
T ss_dssp -HHHHHHHHTT--------EEEE--TTS-HHHHHHS-SSBSEEEEES--S-GGGHHHHHHH---HHHHBTT-TTEEEE--
T ss_pred -HHHHHHHHhccccccccccCcEEEecCcccccccccccCCEEEEecccchHHHHHHHHHH---HHHHhCCCCEEEEE--
Confidence 89999999987 55677888899987531 123579999999999988777755555 66788898864443
Q ss_pred cccCCCCCCCCCCCeEEEeeeeccCccchhhHHHHHhhc
Q 026036 189 KNEQGEGTEGLPWPAFLMSWRRRIGKEDETIFFTSCENA 227 (244)
Q Consensus 189 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 227 (244)
++.|... ...|++.++++
T Consensus 156 -------------------~~~R~~~--~~~F~~~~~k~ 173 (173)
T PF10294_consen 156 -------------------YKRRRKS--EQEFFDRLKKH 173 (173)
T ss_dssp -------------------EE-S-TG--GCHHHHHH---
T ss_pred -------------------eCEecHH--HHHHHHHhhhC
Confidence 5555433 57899998864
|
They make up approximately 0.6-1.6% of the genes in the yeast, human, mouse, Drosophila melanogaster, Caenorhabditis elegans, Arabidopsis thaliana, and Escherichia coli genomes []. This entry represents putative nicotinamide N-methyltransferases involved in rDNA silencing and in lifespan determination. ; PDB: 3BZB_A. |
| >PF01209 Ubie_methyltran: ubiE/COQ5 methyltransferase family; InterPro: IPR004033 A number of methyltransferases have been shown to share regions of similarities [] | Back alignment and domain information |
|---|
Probab=99.80 E-value=1.4e-19 Score=145.41 Aligned_cols=158 Identities=15% Similarity=0.180 Sum_probs=76.0
Q ss_pred CcccCCeEEEeCCCCcHHHHHHHHhC--CCeEEEEeCChHHHHHHHHHhHHhcCCCCCcceEeeecCCCCCCCCCCccEE
Q 026036 74 EWIERRRCIELGSGTGALAIFLRKAM--NLDITTSDYNDQEIEDNIAYNSTTNGITPALPHIKHSWGDAFPIPNPDWDLI 151 (244)
Q Consensus 74 ~~~~~~~VLdlG~G~G~~~~~~a~~~--~~~v~~~D~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fD~I 151 (244)
...+|.+|||+|||||.++..+++.. ..+|+++|+|++|+ +.++++....+.. ++..+..+. +.+++++++||+|
T Consensus 44 ~~~~g~~vLDv~~GtG~~~~~l~~~~~~~~~v~~vD~s~~ML-~~a~~k~~~~~~~-~i~~v~~da-~~lp~~d~sfD~v 120 (233)
T PF01209_consen 44 GLRPGDRVLDVACGTGDVTRELARRVGPNGKVVGVDISPGML-EVARKKLKREGLQ-NIEFVQGDA-EDLPFPDNSFDAV 120 (233)
T ss_dssp T--S--EEEEET-TTSHHHHHHGGGSS---EEEEEES-HHHH-HHHHHHHHHTT---SEEEEE-BT-TB--S-TT-EEEE
T ss_pred CCCCCCEEEEeCCChHHHHHHHHHHCCCccEEEEecCCHHHH-HHHHHHHHhhCCC-CeeEEEcCH-HHhcCCCCceeEE
Confidence 45578899999999999999998765 46899999999998 7787776665542 333433322 4578888999999
Q ss_pred EEcccccCCcChHHHHHHHHHHHHhcCCCCceEeecccccCCC-----------------CCCCCCC--Ce-EEEeeeec
Q 026036 152 LASDILLYVKQYSNLIKSLSVLLKSYKPKDSQVGHLTKNEQGE-----------------GTEGLPW--PA-FLMSWRRR 211 (244)
Q Consensus 152 ~~~~~l~~~~~~~~l~~~l~~~~~~lk~gG~~~~~~~~~~~~~-----------------~~~~~~~--~~-~~~~~~~~ 211 (244)
+++..+.+ .++..+.+++++|+|||||++++.......+. +.+...+ +. ++...-.+
T Consensus 121 ~~~fglrn---~~d~~~~l~E~~RVLkPGG~l~ile~~~p~~~~~~~~~~~y~~~ilP~~g~l~~~~~~~Y~yL~~Si~~ 197 (233)
T PF01209_consen 121 TCSFGLRN---FPDRERALREMYRVLKPGGRLVILEFSKPRNPLLRALYKFYFKYILPLIGRLLSGDREAYRYLPESIRR 197 (233)
T ss_dssp EEES-GGG----SSHHHHHHHHHHHEEEEEEEEEEEEEB-SSHHHHHHHHH-----------------------------
T ss_pred EHHhhHHh---hCCHHHHHHHHHHHcCCCeEEEEeeccCCCCchhhceeeeeeccccccccccccccccccccccccccc
Confidence 99999833 44566999999999999999998844333321 1111111 11 22222233
Q ss_pred cCccchhhHHHHHhhcCCeEEEeccEEE
Q 026036 212 IGKEDETIFFTSCENAGLEVKHLGSRVY 239 (244)
Q Consensus 212 ~~~~~~~~~~~~l~~~Gf~v~~~~~~~~ 239 (244)
+.. .++|.++|+++||+.++.....+
T Consensus 198 f~~--~~~~~~~l~~~Gf~~v~~~~~~~ 223 (233)
T PF01209_consen 198 FPS--PEELKELLEEAGFKNVEYRPLTF 223 (233)
T ss_dssp ----------------------------
T ss_pred ccc--ccccccccccccccccccccccc
Confidence 433 58899999999999776655443
|
Apart from the ubiquinone/menaquinone biosynthesis methyltransferases (for example, the C-methyltransferase from the ubiE gene of Escherichia coli), the ubiquinone biosynthesis methyltransferases (for example, the C-methyltransferase from the COQ5 gene of Saccharomyces cerevisiae) and the menaquinone biosynthesis methyltransferases (for example, the C-methyltransferase from the MENH gene of Bacillus subtilis), this family also includes methyltransferases involved in biotin and sterol biosynthesis and in phosphatidylethanolamine methylation.; GO: 0008168 methyltransferase activity; PDB: 1VL5_C. |
| >COG2226 UbiE Methylase involved in ubiquinone/menaquinone biosynthesis [Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=99.79 E-value=1.3e-18 Score=138.59 Aligned_cols=158 Identities=16% Similarity=0.220 Sum_probs=109.7
Q ss_pred cCcccCCeEEEeCCCCcHHHHHHHHhC-CCeEEEEeCChHHHHHHHHHhHHhcCCCCCcceEeeecCCCCCCCCCCccEE
Q 026036 73 REWIERRRCIELGSGTGALAIFLRKAM-NLDITTSDYNDQEIEDNIAYNSTTNGITPALPHIKHSWGDAFPIPNPDWDLI 151 (244)
Q Consensus 73 ~~~~~~~~VLdlG~G~G~~~~~~a~~~-~~~v~~~D~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fD~I 151 (244)
....+|.+|||+|||||-+++.+++.. ..+|+++|+|+.|+ +.+++.....+..+ +..+..+ ++.+|+++.+||+|
T Consensus 47 ~~~~~g~~vLDva~GTGd~a~~~~k~~g~g~v~~~D~s~~ML-~~a~~k~~~~~~~~-i~fv~~d-Ae~LPf~D~sFD~v 123 (238)
T COG2226 47 LGIKPGDKVLDVACGTGDMALLLAKSVGTGEVVGLDISESML-EVAREKLKKKGVQN-VEFVVGD-AENLPFPDNSFDAV 123 (238)
T ss_pred hCCCCCCEEEEecCCccHHHHHHHHhcCCceEEEEECCHHHH-HHHHHHhhccCccc-eEEEEec-hhhCCCCCCccCEE
Confidence 333489999999999999999998875 57899999999998 77777666544432 3333322 25688999999999
Q ss_pred EEcccccCCcChHHHHHHHHHHHHhcCCCCceEeecccccCCC------------------CCCCCCCCe---EEEeeee
Q 026036 152 LASDILLYVKQYSNLIKSLSVLLKSYKPKDSQVGHLTKNEQGE------------------GTEGLPWPA---FLMSWRR 210 (244)
Q Consensus 152 ~~~~~l~~~~~~~~l~~~l~~~~~~lk~gG~~~~~~~~~~~~~------------------~~~~~~~~~---~~~~~~~ 210 (244)
.++..+.+ .++..++|++++|+|||||++++......... +.+....+. |+.....
T Consensus 124 t~~fglrn---v~d~~~aL~E~~RVlKpgG~~~vle~~~p~~~~~~~~~~~~~~~~v~P~~g~~~~~~~~~y~yL~eSi~ 200 (238)
T COG2226 124 TISFGLRN---VTDIDKALKEMYRVLKPGGRLLVLEFSKPDNPVLRKAYILYYFKYVLPLIGKLVAKDAEAYEYLAESIR 200 (238)
T ss_pred Eeeehhhc---CCCHHHHHHHHHHhhcCCeEEEEEEcCCCCchhhHHHHHHHHHHhHhhhhceeeecChHHHHHHHHHHH
Confidence 99999933 45666999999999999999988833332221 001000000 1112222
Q ss_pred ccCccchhhHHHHHhhcCCeEEEeccEE
Q 026036 211 RIGKEDETIFFTSCENAGLEVKHLGSRV 238 (244)
Q Consensus 211 ~~~~~~~~~~~~~l~~~Gf~v~~~~~~~ 238 (244)
+++. .+.+.++++++||+.+......
T Consensus 201 ~~p~--~~~l~~~~~~~gf~~i~~~~~~ 226 (238)
T COG2226 201 RFPD--QEELKQMIEKAGFEEVRYENLT 226 (238)
T ss_pred hCCC--HHHHHHHHHhcCceEEeeEeee
Confidence 3333 6888899999999977754443
|
|
| >COG4123 Predicted O-methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.79 E-value=2.5e-18 Score=137.03 Aligned_cols=162 Identities=15% Similarity=0.149 Sum_probs=123.9
Q ss_pred CceEEEEecccCCCCcceeechHHHHHHHHhhccCcccCCeEEEeCCCCcHHHHHHHHhC-CCeEEEEeCChHHHHHHHH
Q 026036 40 EMELVIREFAFHQLNANFLWPGTFSFAEWLMHHREWIERRRCIELGSGTGALAIFLRKAM-NLDITTSDYNDQEIEDNIA 118 (244)
Q Consensus 40 ~~~~~~~~~~~~~~~~~~~w~~~~~l~~~~~~~~~~~~~~~VLdlG~G~G~~~~~~a~~~-~~~v~~~D~~~~~l~~~~~ 118 (244)
+..+.+.|.......|. ++..|+.|+. .....+|||||||+|.+++++|.+. ..+|+++|+++++. +.++
T Consensus 15 ~~~~~I~q~~~~~~~~~----DaiLL~~~~~----~~~~~~IlDlGaG~G~l~L~la~r~~~a~I~~VEiq~~~a-~~A~ 85 (248)
T COG4123 15 FKQFFIIQDRCGFRYGT----DAILLAAFAP----VPKKGRILDLGAGNGALGLLLAQRTEKAKIVGVEIQEEAA-EMAQ 85 (248)
T ss_pred ccceEEEeCCCcccccc----HHHHHHhhcc----cccCCeEEEecCCcCHHHHHHhccCCCCcEEEEEeCHHHH-HHHH
Confidence 35666766543322233 8999999964 3346799999999999999999885 58999999999987 8999
Q ss_pred HhHHhcCCCCCcceEeeecCCCCCCC-CCCccEEEEcccccCCcCh---------------HHHHHHHHHHHHhcCCCCc
Q 026036 119 YNSTTNGITPALPHIKHSWGDAFPIP-NPDWDLILASDILLYVKQY---------------SNLIKSLSVLLKSYKPKDS 182 (244)
Q Consensus 119 ~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~fD~I~~~~~l~~~~~~---------------~~l~~~l~~~~~~lk~gG~ 182 (244)
+|+..|.++.++..++.|..+..... ..+||+|+||+++|..... ..+.+.++...++|||||+
T Consensus 86 ~nv~ln~l~~ri~v~~~Di~~~~~~~~~~~fD~Ii~NPPyf~~~~~~~~~~~~~~Ar~e~~~~le~~i~~a~~~lk~~G~ 165 (248)
T COG4123 86 RNVALNPLEERIQVIEADIKEFLKALVFASFDLIICNPPYFKQGSRLNENPLRAIARHEITLDLEDLIRAAAKLLKPGGR 165 (248)
T ss_pred HHHHhCcchhceeEehhhHHHhhhcccccccCEEEeCCCCCCCccccCcChhhhhhhhhhcCCHHHHHHHHHHHccCCCE
Confidence 99999999888888776655433322 2369999999998743222 2467888999999999999
Q ss_pred eEeecccccCCCCCCCCCCCeEEEeeeeccCccchhhHHHHHhhcCCeEEEec
Q 026036 183 QVGHLTKNEQGEGTEGLPWPAFLMSWRRRIGKEDETIFFTSCENAGLEVKHLG 235 (244)
Q Consensus 183 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gf~v~~~~ 235 (244)
++++ +++... .++.++|++.+|+.+++.
T Consensus 166 l~~V---------------------~r~erl----~ei~~~l~~~~~~~k~i~ 193 (248)
T COG4123 166 LAFV---------------------HRPERL----AEIIELLKSYNLEPKRIQ 193 (248)
T ss_pred EEEE---------------------ecHHHH----HHHHHHHHhcCCCceEEE
Confidence 8887 443333 588999999999988764
|
|
| >PTZ00098 phosphoethanolamine N-methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.79 E-value=1.4e-18 Score=142.67 Aligned_cols=171 Identities=12% Similarity=0.135 Sum_probs=114.0
Q ss_pred ceeechHHHHHHHHhhccCcccCCeEEEeCCCCcHHHHHHHHhCCCeEEEEeCChHHHHHHHHHhHHhcCCCCCcceEee
Q 026036 56 NFLWPGTFSFAEWLMHHREWIERRRCIELGSGTGALAIFLRKAMNLDITTSDYNDQEIEDNIAYNSTTNGITPALPHIKH 135 (244)
Q Consensus 56 ~~~w~~~~~l~~~~~~~~~~~~~~~VLdlG~G~G~~~~~~a~~~~~~v~~~D~~~~~l~~~~~~~~~~~~~~~~~~~~~~ 135 (244)
.++-|++..-.+.+.....+.++.+|||||||+|..+..++...+.+|+++|+++.++ +.++.+... ..++..+..
T Consensus 31 ~~~~~gg~~~~~~~l~~l~l~~~~~VLDiGcG~G~~a~~la~~~~~~v~giD~s~~~~-~~a~~~~~~---~~~i~~~~~ 106 (263)
T PTZ00098 31 DYISSGGIEATTKILSDIELNENSKVLDIGSGLGGGCKYINEKYGAHVHGVDICEKMV-NIAKLRNSD---KNKIEFEAN 106 (263)
T ss_pred CCCCCCchHHHHHHHHhCCCCCCCEEEEEcCCCChhhHHHHhhcCCEEEEEECCHHHH-HHHHHHcCc---CCceEEEEC
Confidence 4555666666666776677778899999999999999988876678999999999987 666654332 122333332
Q ss_pred ecCCCCCCCCCCccEEEEcccccCCcChHHHHHHHHHHHHhcCCCCceEeecccccCCCCCCCCCCCeEEEe-eeeccCc
Q 026036 136 SWGDAFPIPNPDWDLILASDILLYVKQYSNLIKSLSVLLKSYKPKDSQVGHLTKNEQGEGTEGLPWPAFLMS-WRRRIGK 214 (244)
Q Consensus 136 ~~~~~~~~~~~~fD~I~~~~~l~~~~~~~~l~~~l~~~~~~lk~gG~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~ 214 (244)
+.. ..++++++||+|++.++++ |....+..+++++++++|||||++++..+....... ....+... ....+..
T Consensus 107 D~~-~~~~~~~~FD~V~s~~~l~-h~~~~d~~~~l~~i~r~LkPGG~lvi~d~~~~~~~~----~~~~~~~~~~~~~~~~ 180 (263)
T PTZ00098 107 DIL-KKDFPENTFDMIYSRDAIL-HLSYADKKKLFEKCYKWLKPNGILLITDYCADKIEN----WDEEFKAYIKKRKYTL 180 (263)
T ss_pred Ccc-cCCCCCCCeEEEEEhhhHH-hCCHHHHHHHHHHHHHHcCCCcEEEEEEeccccccC----cHHHHHHHHHhcCCCC
Confidence 222 2345567899999999883 444446779999999999999999987443221100 00000000 0001111
Q ss_pred cchhhHHHHHhhcCCeEEEecc
Q 026036 215 EDETIFFTSCENAGLEVKHLGS 236 (244)
Q Consensus 215 ~~~~~~~~~l~~~Gf~v~~~~~ 236 (244)
.+..++.++++++||+++...+
T Consensus 181 ~~~~~~~~~l~~aGF~~v~~~d 202 (263)
T PTZ00098 181 IPIQEYGDLIKSCNFQNVVAKD 202 (263)
T ss_pred CCHHHHHHHHHHCCCCeeeEEe
Confidence 2357899999999999887654
|
|
| >PLN02244 tocopherol O-methyltransferase | Back alignment and domain information |
|---|
Probab=99.78 E-value=1.2e-17 Score=141.92 Aligned_cols=167 Identities=10% Similarity=0.071 Sum_probs=111.6
Q ss_pred HHHHHHHhhccCc-----ccCCeEEEeCCCCcHHHHHHHHhCCCeEEEEeCChHHHHHHHHHhHHhcCCCCCcceEeeec
Q 026036 63 FSFAEWLMHHREW-----IERRRCIELGSGTGALAIFLRKAMNLDITTSDYNDQEIEDNIAYNSTTNGITPALPHIKHSW 137 (244)
Q Consensus 63 ~~l~~~~~~~~~~-----~~~~~VLdlG~G~G~~~~~~a~~~~~~v~~~D~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~ 137 (244)
..+.+.+.+.... .++.+|||||||+|.++..+++..+.+|+|+|+++.++ +.++++...+++..++..+..+.
T Consensus 99 ~~~~~~~l~~~~~~~~~~~~~~~VLDiGCG~G~~~~~La~~~g~~v~gvD~s~~~i-~~a~~~~~~~g~~~~v~~~~~D~ 177 (340)
T PLN02244 99 IRMIEESLAWAGVPDDDEKRPKRIVDVGCGIGGSSRYLARKYGANVKGITLSPVQA-ARANALAAAQGLSDKVSFQVADA 177 (340)
T ss_pred HHHHHHHHHhcCCCcccCCCCCeEEEecCCCCHHHHHHHHhcCCEEEEEECCHHHH-HHHHHHHHhcCCCCceEEEEcCc
Confidence 3444444444333 57789999999999999999987788999999999987 77777777666644444444443
Q ss_pred CCCCCCCCCCccEEEEcccccCCcChHHHHHHHHHHHHhcCCCCceEeecccccCCC---CCCCCCCCe-----EEEeee
Q 026036 138 GDAFPIPNPDWDLILASDILLYVKQYSNLIKSLSVLLKSYKPKDSQVGHLTKNEQGE---GTEGLPWPA-----FLMSWR 209 (244)
Q Consensus 138 ~~~~~~~~~~fD~I~~~~~l~~~~~~~~l~~~l~~~~~~lk~gG~~~~~~~~~~~~~---~~~~~~~~~-----~~~~~~ 209 (244)
. .+++.+++||+|++..++++. ++..+.+++++++|||||++++......... ......... ....+.
T Consensus 178 ~-~~~~~~~~FD~V~s~~~~~h~---~d~~~~l~e~~rvLkpGG~lvi~~~~~~~~~~~~~~l~~~~~~~~~~i~~~~~~ 253 (340)
T PLN02244 178 L-NQPFEDGQFDLVWSMESGEHM---PDKRKFVQELARVAAPGGRIIIVTWCHRDLEPGETSLKPDEQKLLDKICAAYYL 253 (340)
T ss_pred c-cCCCCCCCccEEEECCchhcc---CCHHHHHHHHHHHcCCCcEEEEEEecccccccccccCCHHHHHHHHHHHhhccC
Confidence 2 345667899999999998443 3455899999999999999998743221111 000000000 000011
Q ss_pred eccCccchhhHHHHHhhcCCeEEEecc
Q 026036 210 RRIGKEDETIFFTSCENAGLEVKHLGS 236 (244)
Q Consensus 210 ~~~~~~~~~~~~~~l~~~Gf~v~~~~~ 236 (244)
+.+. +..++.++++++||+++++.+
T Consensus 254 p~~~--s~~~~~~~l~~aGf~~v~~~d 278 (340)
T PLN02244 254 PAWC--STSDYVKLAESLGLQDIKTED 278 (340)
T ss_pred CCCC--CHHHHHHHHHHCCCCeeEeee
Confidence 1222 257999999999999887654
|
|
| >TIGR00452 methyltransferase, putative | Back alignment and domain information |
|---|
Probab=99.78 E-value=4.9e-18 Score=141.62 Aligned_cols=198 Identities=10% Similarity=0.015 Sum_probs=115.7
Q ss_pred cccccceeeeecccCCceEEEEecccCCCCcceeechHHHHHHHHhhccCcccCCeEEEeCCCCcHHHHHHHHhCCCeEE
Q 026036 25 METCNGYVERPHQFPEMELVIREFAFHQLNANFLWPGTFSFAEWLMHHREWIERRRCIELGSGTGALAIFLRKAMNLDIT 104 (244)
Q Consensus 25 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~l~~~~~~~~~~~~~~~VLdlG~G~G~~~~~~a~~~~~~v~ 104 (244)
.......++....+...++.+.++... .-|-+...+.+ +..+....+|++|||+|||+|.++..++..+...|+
T Consensus 75 ~~~l~~~l~~l~p~~~~~~~l~~~~~~-----~e~~s~~~~~~-~l~~l~~~~g~~VLDvGCG~G~~~~~~~~~g~~~v~ 148 (314)
T TIGR00452 75 IKRILEEIMALMPWRKGPFELSGIKID-----SEWRSDIKWDR-VLPHLSPLKGRTILDVGCGSGYHMWRMLGHGAKSLV 148 (314)
T ss_pred HHHHHHHHHhcCCCCCCCcccccccCC-----HHHHHHHHHHH-HHHhcCCCCCCEEEEeccCCcHHHHHHHHcCCCEEE
Confidence 334455555566666677777765321 12223322222 333445567899999999999999888877666899
Q ss_pred EEeCChHHHHHHHHHhHHhcCCCCCcceEeeecCCCCCCCCCCccEEEEcccccCCcChHHHHHHHHHHHHhcCCCCceE
Q 026036 105 TSDYNDQEIEDNIAYNSTTNGITPALPHIKHSWGDAFPIPNPDWDLILASDILLYVKQYSNLIKSLSVLLKSYKPKDSQV 184 (244)
Q Consensus 105 ~~D~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fD~I~~~~~l~~~~~~~~l~~~l~~~~~~lk~gG~~~ 184 (244)
|+|.|+.|+.. ++..........++.....+.. .++. ..+||+|+|+.++||.. +....++++++.|||||.++
T Consensus 149 GiDpS~~ml~q-~~~~~~~~~~~~~v~~~~~~ie-~lp~-~~~FD~V~s~gvL~H~~---dp~~~L~el~r~LkpGG~Lv 222 (314)
T TIGR00452 149 GIDPTVLFLCQ-FEAVRKLLDNDKRAILEPLGIE-QLHE-LYAFDTVFSMGVLYHRK---SPLEHLKQLKHQLVIKGELV 222 (314)
T ss_pred EEcCCHHHHHH-HHHHHHHhccCCCeEEEECCHH-HCCC-CCCcCEEEEcchhhccC---CHHHHHHHHHHhcCCCCEEE
Confidence 99999988632 2211111011112222222222 2222 24799999999996643 44589999999999999999
Q ss_pred eecccccCCCCCCCCCCCeEEEeeeeccCccchhhHHHHHhhcCCeEEEec
Q 026036 185 GHLTKNEQGEGTEGLPWPAFLMSWRRRIGKEDETIFFTSCENAGLEVKHLG 235 (244)
Q Consensus 185 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gf~v~~~~ 235 (244)
+.+...+............+ ...+..+...+...+...++++||+.+++.
T Consensus 223 letl~i~g~~~~~l~p~~ry-~k~~nv~flpS~~~L~~~L~~aGF~~V~i~ 272 (314)
T TIGR00452 223 LETLVIDGDLNTVLVPKDRY-AKMKNVYFIPSVSALKNWLEKVGFENFRIL 272 (314)
T ss_pred EEEEEecCccccccCchHHH-HhccccccCCCHHHHHHHHHHCCCeEEEEE
Confidence 87443322111110000000 000001111235788899999999988764
|
Known examples to date are restricted to the proteobacteria. |
| >PF02353 CMAS: Mycolic acid cyclopropane synthetase; InterPro: IPR003333 This entry represents mycolic acid cyclopropane synthases and related enzymes, including CmaA1, CmaA2 (cyclopropane mycolic acid synthase A1 and A2) and MmaA1-4 (methoxymycolic acid synthase A1-4) | Back alignment and domain information |
|---|
Probab=99.76 E-value=3.1e-18 Score=140.53 Aligned_cols=168 Identities=14% Similarity=0.164 Sum_probs=110.7
Q ss_pred hHHHHHHHHhhccCcccCCeEEEeCCCCcHHHHHHHHhCCCeEEEEeCChHHHHHHHHHhHHhcCCCCCcceEeeecCCC
Q 026036 61 GTFSFAEWLMHHREWIERRRCIELGSGTGALAIFLRKAMNLDITTSDYNDQEIEDNIAYNSTTNGITPALPHIKHSWGDA 140 (244)
Q Consensus 61 ~~~~l~~~~~~~~~~~~~~~VLdlG~G~G~~~~~~a~~~~~~v~~~D~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 140 (244)
+-....+.+.+...+.+|.+|||||||.|.+++.+++..+++|+++.+|++.. +.+++.+...++++++.....++.+.
T Consensus 46 AQ~~k~~~~~~~~~l~~G~~vLDiGcGwG~~~~~~a~~~g~~v~gitlS~~Q~-~~a~~~~~~~gl~~~v~v~~~D~~~~ 124 (273)
T PF02353_consen 46 AQERKLDLLCEKLGLKPGDRVLDIGCGWGGLAIYAAERYGCHVTGITLSEEQA-EYARERIREAGLEDRVEVRLQDYRDL 124 (273)
T ss_dssp HHHHHHHHHHTTTT--TT-EEEEES-TTSHHHHHHHHHH--EEEEEES-HHHH-HHHHHHHHCSTSSSTEEEEES-GGG-
T ss_pred HHHHHHHHHHHHhCCCCCCEEEEeCCCccHHHHHHHHHcCcEEEEEECCHHHH-HHHHHHHHhcCCCCceEEEEeecccc
Confidence 44566677888888899999999999999999999999899999999999986 88888888888876666655555432
Q ss_pred CCCCCCCccEEEEcccccCCcChHHHHHHHHHHHHhcCCCCceEeecccccCCCCCCCCC-CCeEEEe---eeeccCccc
Q 026036 141 FPIPNPDWDLILASDILLYVKQYSNLIKSLSVLLKSYKPKDSQVGHLTKNEQGEGTEGLP-WPAFLMS---WRRRIGKED 216 (244)
Q Consensus 141 ~~~~~~~fD~I~~~~~l~~~~~~~~l~~~l~~~~~~lk~gG~~~~~~~~~~~~~~~~~~~-~~~~~~~---~~~~~~~~~ 216 (244)
..+||.|++..++ .|.........++.+.+.|||||++++............... ...|+.. .....+ +
T Consensus 125 ----~~~fD~IvSi~~~-Ehvg~~~~~~~f~~~~~~LkpgG~~~lq~i~~~~~~~~~~~~~~~~~i~kyiFPgg~lp--s 197 (273)
T PF02353_consen 125 ----PGKFDRIVSIEMF-EHVGRKNYPAFFRKISRLLKPGGRLVLQTITHRDPPYHAERRSSSDFIRKYIFPGGYLP--S 197 (273)
T ss_dssp ------S-SEEEEESEG-GGTCGGGHHHHHHHHHHHSETTEEEEEEEEEE--HHHHHCTTCCCHHHHHHTSTTS-----B
T ss_pred ----CCCCCEEEEEech-hhcChhHHHHHHHHHHHhcCCCcEEEEEecccccccchhhcCCCceEEEEeeCCCCCCC--C
Confidence 2389999999998 655557778999999999999999988733332211111000 0011111 111222 2
Q ss_pred hhhHHHHHhhcCCeEEEecc
Q 026036 217 ETIFFTSCENAGLEVKHLGS 236 (244)
Q Consensus 217 ~~~~~~~l~~~Gf~v~~~~~ 236 (244)
...+...+++.||++.++..
T Consensus 198 ~~~~~~~~~~~~l~v~~~~~ 217 (273)
T PF02353_consen 198 LSEILRAAEDAGLEVEDVEN 217 (273)
T ss_dssp HHHHHHHHHHTT-EEEEEEE
T ss_pred HHHHHHHHhcCCEEEEEEEE
Confidence 46777889999999988753
|
All are thought to be S-adenosyl-L-methionine (SAM) utilising methyltransferases []. Mycolic acid cyclopropane synthase or cyclopropane-fatty-acyl-phospholipid synthase (CFA synthase) 2.1.1.79 from EC catalyses the reaction: |
| >PLN02396 hexaprenyldihydroxybenzoate methyltransferase | Back alignment and domain information |
|---|
Probab=99.76 E-value=5.3e-18 Score=142.01 Aligned_cols=159 Identities=16% Similarity=0.143 Sum_probs=104.1
Q ss_pred ccCCeEEEeCCCCcHHHHHHHHhCCCeEEEEeCChHHHHHHHHHhHHhcCCCCCcceEeeecCCCCCCCCCCccEEEEcc
Q 026036 76 IERRRCIELGSGTGALAIFLRKAMNLDITTSDYNDQEIEDNIAYNSTTNGITPALPHIKHSWGDAFPIPNPDWDLILASD 155 (244)
Q Consensus 76 ~~~~~VLdlG~G~G~~~~~~a~~~~~~v~~~D~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fD~I~~~~ 155 (244)
.++.+|||||||+|.++..+++. +.+|+|+|++++++ +.++.+...+....++..+..+. +.++..+++||+|++.+
T Consensus 130 ~~g~~ILDIGCG~G~~s~~La~~-g~~V~GID~s~~~i-~~Ar~~~~~~~~~~~i~~~~~da-e~l~~~~~~FD~Vi~~~ 206 (322)
T PLN02396 130 FEGLKFIDIGCGGGLLSEPLARM-GATVTGVDAVDKNV-KIARLHADMDPVTSTIEYLCTTA-EKLADEGRKFDAVLSLE 206 (322)
T ss_pred CCCCEEEEeeCCCCHHHHHHHHc-CCEEEEEeCCHHHH-HHHHHHHHhcCcccceeEEecCH-HHhhhccCCCCEEEEhh
Confidence 46779999999999999988865 78999999999997 77776655443322333332222 23344567899999999
Q ss_pred cccCCcChHHHHHHHHHHHHhcCCCCceEeecccccCCC--CCCCCCC--CeEEEee-eeccCccchhhHHHHHhhcCCe
Q 026036 156 ILLYVKQYSNLIKSLSVLLKSYKPKDSQVGHLTKNEQGE--GTEGLPW--PAFLMSW-RRRIGKEDETIFFTSCENAGLE 230 (244)
Q Consensus 156 ~l~~~~~~~~l~~~l~~~~~~lk~gG~~~~~~~~~~~~~--~~~~~~~--~~~~~~~-~~~~~~~~~~~~~~~l~~~Gf~ 230 (244)
++++.. +....++++.++|||||.+++.+....... ....... ..|.... ..+....+.+++.++++++||+
T Consensus 207 vLeHv~---d~~~~L~~l~r~LkPGG~liist~nr~~~~~~~~i~~~eyi~~~lp~gth~~~~f~tp~eL~~lL~~aGf~ 283 (322)
T PLN02396 207 VIEHVA---NPAEFCKSLSALTIPNGATVLSTINRTMRAYASTIVGAEYILRWLPKGTHQWSSFVTPEELSMILQRASVD 283 (322)
T ss_pred HHHhcC---CHHHHHHHHHHHcCCCcEEEEEECCcCHHHHHHhhhhHHHHHhcCCCCCcCccCCCCHHHHHHHHHHcCCe
Confidence 994433 344899999999999999998854332100 0000000 0000000 0111112368999999999999
Q ss_pred EEEeccEEEE
Q 026036 231 VKHLGSRVYC 240 (244)
Q Consensus 231 v~~~~~~~~~ 240 (244)
+..+....|.
T Consensus 284 i~~~~G~~~~ 293 (322)
T PLN02396 284 VKEMAGFVYN 293 (322)
T ss_pred EEEEeeeEEc
Confidence 9998766654
|
|
| >COG2230 Cfa Cyclopropane fatty acid synthase and related methyltransferases [Cell envelope biogenesis, outer membrane] | Back alignment and domain information |
|---|
Probab=99.75 E-value=1.9e-17 Score=134.25 Aligned_cols=164 Identities=13% Similarity=0.177 Sum_probs=123.4
Q ss_pred HHHHHHHHhhccCcccCCeEEEeCCCCcHHHHHHHHhCCCeEEEEeCChHHHHHHHHHhHHhcCCCCCcceEeeecCCCC
Q 026036 62 TFSFAEWLMHHREWIERRRCIELGSGTGALAIFLRKAMNLDITTSDYNDQEIEDNIAYNSTTNGITPALPHIKHSWGDAF 141 (244)
Q Consensus 62 ~~~l~~~~~~~~~~~~~~~VLdlG~G~G~~~~~~a~~~~~~v~~~D~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 141 (244)
-..-.+.+.....+.+|.+|||||||.|.+++.+|+..+.+|+|+++|+++. +.+++.+..-+++.++..+-.+|.+.
T Consensus 57 Q~~k~~~~~~kl~L~~G~~lLDiGCGWG~l~~~aA~~y~v~V~GvTlS~~Q~-~~~~~r~~~~gl~~~v~v~l~d~rd~- 134 (283)
T COG2230 57 QRAKLDLILEKLGLKPGMTLLDIGCGWGGLAIYAAEEYGVTVVGVTLSEEQL-AYAEKRIAARGLEDNVEVRLQDYRDF- 134 (283)
T ss_pred HHHHHHHHHHhcCCCCCCEEEEeCCChhHHHHHHHHHcCCEEEEeeCCHHHH-HHHHHHHHHcCCCcccEEEecccccc-
Confidence 3344466777888899999999999999999999999899999999999997 88888888888866666666666543
Q ss_pred CCCCCCccEEEEcccccCCcChHHHHHHHHHHHHhcCCCCceEeecccccCCCCCCCCCCCeEEEe---eeeccCccchh
Q 026036 142 PIPNPDWDLILASDILLYVKQYSNLIKSLSVLLKSYKPKDSQVGHLTKNEQGEGTEGLPWPAFLMS---WRRRIGKEDET 218 (244)
Q Consensus 142 ~~~~~~fD~I~~~~~l~~~~~~~~l~~~l~~~~~~lk~gG~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~ 218 (244)
.++||-|++..++ +|-..+.....++.+.+.|+|||++++.+....+.... ..+.|+.. ..-..+ +.+
T Consensus 135 ---~e~fDrIvSvgmf-Ehvg~~~~~~ff~~~~~~L~~~G~~llh~I~~~~~~~~---~~~~~i~~yiFPgG~lP--s~~ 205 (283)
T COG2230 135 ---EEPFDRIVSVGMF-EHVGKENYDDFFKKVYALLKPGGRMLLHSITGPDQEFR---RFPDFIDKYIFPGGELP--SIS 205 (283)
T ss_pred ---ccccceeeehhhH-HHhCcccHHHHHHHHHhhcCCCceEEEEEecCCCcccc---cchHHHHHhCCCCCcCC--CHH
Confidence 3459999999998 76666778899999999999999998885444432221 11122211 112222 246
Q ss_pred hHHHHHhhcCCeEEEecc
Q 026036 219 IFFTSCENAGLEVKHLGS 236 (244)
Q Consensus 219 ~~~~~l~~~Gf~v~~~~~ 236 (244)
.+.+..+++||.+.+...
T Consensus 206 ~i~~~~~~~~~~v~~~~~ 223 (283)
T COG2230 206 EILELASEAGFVVLDVES 223 (283)
T ss_pred HHHHHHHhcCcEEehHhh
Confidence 777889999999987653
|
|
| >PRK15068 tRNA mo(5)U34 methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.75 E-value=3.8e-17 Score=137.56 Aligned_cols=171 Identities=13% Similarity=0.124 Sum_probs=104.0
Q ss_pred eechHHHHHHHHhhccCcccCCeEEEeCCCCcHHHHHHHHhCCCeEEEEeCChHHHHHHHHHhHHhcCCCCCcceEeeec
Q 026036 58 LWPGTFSFAEWLMHHREWIERRRCIELGSGTGALAIFLRKAMNLDITTSDYNDQEIEDNIAYNSTTNGITPALPHIKHSW 137 (244)
Q Consensus 58 ~w~~~~~l~~~~~~~~~~~~~~~VLdlG~G~G~~~~~~a~~~~~~v~~~D~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~ 137 (244)
-|++...... +..+....+|++|||||||+|..+..++..+..+|+|+|.|+.++ ...+......+...++..+..+.
T Consensus 104 ew~s~~k~~~-l~~~l~~l~g~~VLDIGCG~G~~~~~la~~g~~~V~GiD~S~~~l-~q~~a~~~~~~~~~~i~~~~~d~ 181 (322)
T PRK15068 104 EWRSDWKWDR-VLPHLSPLKGRTVLDVGCGNGYHMWRMLGAGAKLVVGIDPSQLFL-CQFEAVRKLLGNDQRAHLLPLGI 181 (322)
T ss_pred eehHHhHHHH-HHHhhCCCCCCEEEEeccCCcHHHHHHHHcCCCEEEEEcCCHHHH-HHHHHHHHhcCCCCCeEEEeCCH
Confidence 4555444333 233344457899999999999999999888767799999999876 22221111111112233333333
Q ss_pred CCCCCCCCCCccEEEEcccccCCcChHHHHHHHHHHHHhcCCCCceEeecccccCCCCCCCCCCCeEEEeeeeccCccch
Q 026036 138 GDAFPIPNPDWDLILASDILLYVKQYSNLIKSLSVLLKSYKPKDSQVGHLTKNEQGEGTEGLPWPAFLMSWRRRIGKEDE 217 (244)
Q Consensus 138 ~~~~~~~~~~fD~I~~~~~l~~~~~~~~l~~~l~~~~~~lk~gG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 217 (244)
+.++. .++||+|+|..++||.. +....++++++.|+|||.+++..................+ ...+..+...+.
T Consensus 182 -e~lp~-~~~FD~V~s~~vl~H~~---dp~~~L~~l~~~LkpGG~lvl~~~~i~~~~~~~l~p~~~y-~~~~~~~~lps~ 255 (322)
T PRK15068 182 -EQLPA-LKAFDTVFSMGVLYHRR---SPLDHLKQLKDQLVPGGELVLETLVIDGDENTVLVPGDRY-AKMRNVYFIPSV 255 (322)
T ss_pred -HHCCC-cCCcCEEEECChhhccC---CHHHHHHHHHHhcCCCcEEEEEEEEecCCCccccCchhHH-hcCccceeCCCH
Confidence 23344 57899999999996543 3448999999999999999886432222111110000000 001111111245
Q ss_pred hhHHHHHhhcCCeEEEecc
Q 026036 218 TIFFTSCENAGLEVKHLGS 236 (244)
Q Consensus 218 ~~~~~~l~~~Gf~v~~~~~ 236 (244)
..+..+|+++||+.+++.+
T Consensus 256 ~~l~~~L~~aGF~~i~~~~ 274 (322)
T PRK15068 256 PALKNWLERAGFKDVRIVD 274 (322)
T ss_pred HHHHHHHHHcCCceEEEEe
Confidence 7899999999999887753
|
|
| >PF12847 Methyltransf_18: Methyltransferase domain; PDB: 3G2Q_A 3G2O_A 3G2M_B 3G2P_B 3D2L_B 1IM8_B 3NJR_A 3E05_H 3EVZ_A 3HM2_A | Back alignment and domain information |
|---|
Probab=99.75 E-value=1.2e-17 Score=119.57 Aligned_cols=108 Identities=19% Similarity=0.277 Sum_probs=83.4
Q ss_pred cCCeEEEeCCCCcHHHHHHHHh-CCCeEEEEeCChHHHHHHHHHhHHhcCCCCCcceEeeecCCCCCCCCCCccEEEEcc
Q 026036 77 ERRRCIELGSGTGALAIFLRKA-MNLDITTSDYNDQEIEDNIAYNSTTNGITPALPHIKHSWGDAFPIPNPDWDLILASD 155 (244)
Q Consensus 77 ~~~~VLdlG~G~G~~~~~~a~~-~~~~v~~~D~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fD~I~~~~ 155 (244)
|+.+|||||||+|.+++.+++. .+.+|+++|+|++++ +.++++........++..+..++ .......++||+|++..
T Consensus 1 p~~~vLDlGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~-~~a~~~~~~~~~~~~i~~~~~d~-~~~~~~~~~~D~v~~~~ 78 (112)
T PF12847_consen 1 PGGRVLDLGCGTGRLSIALARLFPGARVVGVDISPEML-EIARERAAEEGLSDRITFVQGDA-EFDPDFLEPFDLVICSG 78 (112)
T ss_dssp TTCEEEEETTTTSHHHHHHHHHHTTSEEEEEESSHHHH-HHHHHHHHHTTTTTTEEEEESCC-HGGTTTSSCEEEEEECS
T ss_pred CCCEEEEEcCcCCHHHHHHHhcCCCCEEEEEeCCHHHH-HHHHHHHHhcCCCCCeEEEECcc-ccCcccCCCCCEEEECC
Confidence 5789999999999999999984 588999999999997 88888886666656666665555 21223345799999998
Q ss_pred -cccCCcChHHHHHHHHHHHHhcCCCCceEee
Q 026036 156 -ILLYVKQYSNLIKSLSVLLKSYKPKDSQVGH 186 (244)
Q Consensus 156 -~l~~~~~~~~l~~~l~~~~~~lk~gG~~~~~ 186 (244)
++.+....+...+.++++.+.|+|||++++.
T Consensus 79 ~~~~~~~~~~~~~~~l~~~~~~L~pgG~lvi~ 110 (112)
T PF12847_consen 79 FTLHFLLPLDERRRVLERIRRLLKPGGRLVIN 110 (112)
T ss_dssp GSGGGCCHHHHHHHHHHHHHHHEEEEEEEEEE
T ss_pred CccccccchhHHHHHHHHHHHhcCCCcEEEEE
Confidence 4422223366779999999999999998875
|
... |
| >PF05175 MTS: Methyltransferase small domain; InterPro: IPR007848 This domain is found in ribosomal RNA small subunit methyltransferase C and in other methyltransferases | Back alignment and domain information |
|---|
Probab=99.75 E-value=3.1e-17 Score=126.17 Aligned_cols=119 Identities=21% Similarity=0.287 Sum_probs=88.9
Q ss_pred chHHHHHHHHhhccCcccCCeEEEeCCCCcHHHHHHHHhCCC-eEEEEeCChHHHHHHHHHhHHhcCCCCCcceEeeecC
Q 026036 60 PGTFSFAEWLMHHREWIERRRCIELGSGTGALAIFLRKAMNL-DITTSDYNDQEIEDNIAYNSTTNGITPALPHIKHSWG 138 (244)
Q Consensus 60 ~~~~~l~~~~~~~~~~~~~~~VLdlG~G~G~~~~~~a~~~~~-~v~~~D~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 138 (244)
+++..|++++... ++.+|||+|||+|.+++.+++.... +|+++|+++.++ +.+++|...|++.. +..+..++.
T Consensus 18 ~~t~lL~~~l~~~----~~~~vLDlG~G~G~i~~~la~~~~~~~v~~vDi~~~a~-~~a~~n~~~n~~~~-v~~~~~d~~ 91 (170)
T PF05175_consen 18 AGTRLLLDNLPKH----KGGRVLDLGCGSGVISLALAKRGPDAKVTAVDINPDAL-ELAKRNAERNGLEN-VEVVQSDLF 91 (170)
T ss_dssp HHHHHHHHHHHHH----TTCEEEEETSTTSHHHHHHHHTSTCEEEEEEESBHHHH-HHHHHHHHHTTCTT-EEEEESSTT
T ss_pred HHHHHHHHHHhhc----cCCeEEEecCChHHHHHHHHHhCCCCEEEEEcCCHHHH-HHHHHHHHhcCccc-ccccccccc
Confidence 4667777777654 6679999999999999999988644 799999999987 89999999998854 444444443
Q ss_pred CCCCCCCCCccEEEEcccccCCcC--hHHHHHHHHHHHHhcCCCCceEee
Q 026036 139 DAFPIPNPDWDLILASDILLYVKQ--YSNLIKSLSVLLKSYKPKDSQVGH 186 (244)
Q Consensus 139 ~~~~~~~~~fD~I~~~~~l~~~~~--~~~l~~~l~~~~~~lk~gG~~~~~ 186 (244)
+..+ .++||+|++|.+++.... ...+.+.++...+.|||||+++++
T Consensus 92 ~~~~--~~~fD~Iv~NPP~~~~~~~~~~~~~~~i~~a~~~Lk~~G~l~lv 139 (170)
T PF05175_consen 92 EALP--DGKFDLIVSNPPFHAGGDDGLDLLRDFIEQARRYLKPGGRLFLV 139 (170)
T ss_dssp TTCC--TTCEEEEEE---SBTTSHCHHHHHHHHHHHHHHHEEEEEEEEEE
T ss_pred cccc--ccceeEEEEccchhcccccchhhHHHHHHHHHHhccCCCEEEEE
Confidence 3322 578999999999733221 124568899999999999998775
|
; GO: 0008168 methyltransferase activity; PDB: 1WY7_A 1DUS_A 2OZV_A 2PJD_A 1VQ1_A 1NV9_A 1SG9_C 1NV8_A 3Q87_B 3DMF_A .... |
| >TIGR00537 hemK_rel_arch HemK-related putative methylase | Back alignment and domain information |
|---|
Probab=99.74 E-value=1.5e-16 Score=123.40 Aligned_cols=145 Identities=19% Similarity=0.186 Sum_probs=102.3
Q ss_pred hHHHHHHHHhhccCcccCCeEEEeCCCCcHHHHHHHHhCCCeEEEEeCChHHHHHHHHHhHHhcCCCCCcceEeeecCCC
Q 026036 61 GTFSFAEWLMHHREWIERRRCIELGSGTGALAIFLRKAMNLDITTSDYNDQEIEDNIAYNSTTNGITPALPHIKHSWGDA 140 (244)
Q Consensus 61 ~~~~l~~~~~~~~~~~~~~~VLdlG~G~G~~~~~~a~~~~~~v~~~D~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 140 (244)
.+..+.+++. ..++.+|||+|||+|.++..++..+. +|+++|++++++ +.+++|...++. .+..+..++.+
T Consensus 7 d~~~l~~~l~----~~~~~~vLdlG~G~G~~~~~l~~~~~-~v~~vD~s~~~~-~~a~~~~~~~~~--~~~~~~~d~~~- 77 (179)
T TIGR00537 7 DSLLLEANLR----ELKPDDVLEIGAGTGLVAIRLKGKGK-CILTTDINPFAV-KELRENAKLNNV--GLDVVMTDLFK- 77 (179)
T ss_pred cHHHHHHHHH----hcCCCeEEEeCCChhHHHHHHHhcCC-EEEEEECCHHHH-HHHHHHHHHcCC--ceEEEEccccc-
Confidence 4555555543 34567999999999999999988754 999999999987 888888877665 23333333322
Q ss_pred CCCCCCCccEEEEcccccCCcC------------------hHHHHHHHHHHHHhcCCCCceEeecccccCCCCCCCCCCC
Q 026036 141 FPIPNPDWDLILASDILLYVKQ------------------YSNLIKSLSVLLKSYKPKDSQVGHLTKNEQGEGTEGLPWP 202 (244)
Q Consensus 141 ~~~~~~~fD~I~~~~~l~~~~~------------------~~~l~~~l~~~~~~lk~gG~~~~~~~~~~~~~~~~~~~~~ 202 (244)
...++||+|+++.+++.... .....+.++++.+.|||||++++....
T Consensus 78 --~~~~~fD~Vi~n~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~Lk~gG~~~~~~~~------------- 142 (179)
T TIGR00537 78 --GVRGKFDVILFNPPYLPLEDDLRRGDWLDVAIDGGKDGRKVIDRFLDELPEILKEGGRVQLIQSS------------- 142 (179)
T ss_pred --ccCCcccEEEECCCCCCCcchhcccchhhhhhhcCCchHHHHHHHHHhHHHhhCCCCEEEEEEec-------------
Confidence 23458999999988632211 112457789999999999988775211
Q ss_pred eEEEeeeeccCccchhhHHHHHhhcCCeEEEeccEEEE
Q 026036 203 AFLMSWRRRIGKEDETIFFTSCENAGLEVKHLGSRVYC 240 (244)
Q Consensus 203 ~~~~~~~~~~~~~~~~~~~~~l~~~Gf~v~~~~~~~~~ 240 (244)
... ...+.+.+++.||+++.+.+....
T Consensus 143 --------~~~---~~~~~~~l~~~gf~~~~~~~~~~~ 169 (179)
T TIGR00537 143 --------LNG---EPDTFDKLDERGFRYEIVAERGLF 169 (179)
T ss_pred --------cCC---hHHHHHHHHhCCCeEEEEEEeecC
Confidence 111 368889999999999988766543
|
The gene hemK from E. coli was found to contribute to heme biosynthesis and originally suggested to be protoporphyrinogen oxidase (Medline 95189105). Functional analysis of the nearest homolog in Saccharomyces cerevisiae, YNL063w, finds it is not protoporphyrinogen oxidase and sequence analysis suggests that HemK homologs have S-adenosyl-methionine-dependent methyltransferase activity (Medline 99237242). Homologs are found, usually in a single copy, in nearly all completed genomes, but varying somewhat in apparent domain architecture. This model represents an archaeal and eukaryotic protein family that lacks an N-terminal domain found in HemK and its eubacterial homologs. It is found in a single copy in the first six completed archaeal and eukaryotic genomes. |
| >PRK11036 putative S-adenosyl-L-methionine-dependent methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.74 E-value=3.5e-17 Score=133.96 Aligned_cols=154 Identities=17% Similarity=0.173 Sum_probs=102.3
Q ss_pred cCCeEEEeCCCCcHHHHHHHHhCCCeEEEEeCChHHHHHHHHHhHHhcCCCCCcceEeeecCCCCCCCCCCccEEEEccc
Q 026036 77 ERRRCIELGSGTGALAIFLRKAMNLDITTSDYNDQEIEDNIAYNSTTNGITPALPHIKHSWGDAFPIPNPDWDLILASDI 156 (244)
Q Consensus 77 ~~~~VLdlG~G~G~~~~~~a~~~~~~v~~~D~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fD~I~~~~~ 156 (244)
++.+|||+|||+|..+..++.. +.+|+++|+|++|+ +.++++....++..++..+..+..+..+..+++||+|++.++
T Consensus 44 ~~~~vLDiGcG~G~~a~~la~~-g~~v~~vD~s~~~l-~~a~~~~~~~g~~~~v~~~~~d~~~l~~~~~~~fD~V~~~~v 121 (255)
T PRK11036 44 RPLRVLDAGGGEGQTAIKLAEL-GHQVILCDLSAEMI-QRAKQAAEAKGVSDNMQFIHCAAQDIAQHLETPVDLILFHAV 121 (255)
T ss_pred CCCEEEEeCCCchHHHHHHHHc-CCEEEEEECCHHHH-HHHHHHHHhcCCccceEEEEcCHHHHhhhcCCCCCEEEehhH
Confidence 5679999999999999999886 78999999999997 788887776665444444443333322344578999999999
Q ss_pred ccCCcChHHHHHHHHHHHHhcCCCCceEeecccccCCC------CCCCCCCCeEE----EeeeeccCccchhhHHHHHhh
Q 026036 157 LLYVKQYSNLIKSLSVLLKSYKPKDSQVGHLTKNEQGE------GTEGLPWPAFL----MSWRRRIGKEDETIFFTSCEN 226 (244)
Q Consensus 157 l~~~~~~~~l~~~l~~~~~~lk~gG~~~~~~~~~~~~~------~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~l~~ 226 (244)
+++.. +...+++++.++|||||++++..+...... ........... ....+... .+.+++.+++++
T Consensus 122 l~~~~---~~~~~l~~~~~~LkpgG~l~i~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~-~~~~~l~~~l~~ 197 (255)
T PRK11036 122 LEWVA---DPKSVLQTLWSVLRPGGALSLMFYNANGLLMHNMVAGNFDYVQAGMPKRKKRTLSPDYP-LDPEQVYQWLEE 197 (255)
T ss_pred HHhhC---CHHHHHHHHHHHcCCCeEEEEEEECccHHHHHHHHccChHHHHhcCccccccCCCCCCC-CCHHHHHHHHHH
Confidence 84432 334889999999999999987743322100 00000000000 00111111 235789999999
Q ss_pred cCCeEEEecc
Q 026036 227 AGLEVKHLGS 236 (244)
Q Consensus 227 ~Gf~v~~~~~ 236 (244)
+||+++.+..
T Consensus 198 aGf~~~~~~g 207 (255)
T PRK11036 198 AGWQIMGKTG 207 (255)
T ss_pred CCCeEeeeee
Confidence 9999986543
|
|
| >COG2264 PrmA Ribosomal protein L11 methylase [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=99.73 E-value=1.2e-16 Score=130.71 Aligned_cols=143 Identities=22% Similarity=0.241 Sum_probs=106.6
Q ss_pred chHHHHHHHHhhccCcccCCeEEEeCCCCcHHHHHHHHhCCCeEEEEeCChHHHHHHHHHhHHhcCCCCCcceEeeecCC
Q 026036 60 PGTFSFAEWLMHHREWIERRRCIELGSGTGALAIFLRKAMNLDITTSDYNDQEIEDNIAYNSTTNGITPALPHIKHSWGD 139 (244)
Q Consensus 60 ~~~~~l~~~~~~~~~~~~~~~VLdlG~G~G~~~~~~a~~~~~~v~~~D~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 139 (244)
|.+..-.+++.+... +|.+|||+|||||.+++++++.+..+|+|+|+++.++ +.++.|+..|+++. .+.....+
T Consensus 147 pTT~lcL~~Le~~~~--~g~~vlDvGcGSGILaIAa~kLGA~~v~g~DiDp~AV-~aa~eNa~~N~v~~---~~~~~~~~ 220 (300)
T COG2264 147 PTTSLCLEALEKLLK--KGKTVLDVGCGSGILAIAAAKLGAKKVVGVDIDPQAV-EAARENARLNGVEL---LVQAKGFL 220 (300)
T ss_pred hhHHHHHHHHHHhhc--CCCEEEEecCChhHHHHHHHHcCCceEEEecCCHHHH-HHHHHHHHHcCCch---hhhccccc
Confidence 444444455554443 8899999999999999999999888899999999987 89999999999853 12222333
Q ss_pred CCCCCC-CCccEEEEcccccCCcChHHHHHHHHHHHHhcCCCCceEeecccccCCCCCCCCCCCeEEEeeeeccCccchh
Q 026036 140 AFPIPN-PDWDLILASDILLYVKQYSNLIKSLSVLLKSYKPKDSQVGHLTKNEQGEGTEGLPWPAFLMSWRRRIGKEDET 218 (244)
Q Consensus 140 ~~~~~~-~~fD~I~~~~~l~~~~~~~~l~~~l~~~~~~lk~gG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 218 (244)
...... ++||+|++|= + ...+..+...+.+.+||||+++++ - ...+..+
T Consensus 221 ~~~~~~~~~~DvIVANI-L-----A~vl~~La~~~~~~lkpgg~lIlS---------------------G---Il~~q~~ 270 (300)
T COG2264 221 LLEVPENGPFDVIVANI-L-----AEVLVELAPDIKRLLKPGGRLILS---------------------G---ILEDQAE 270 (300)
T ss_pred chhhcccCcccEEEehh-h-----HHHHHHHHHHHHHHcCCCceEEEE---------------------e---ehHhHHH
Confidence 333333 5899999853 4 566778899999999999998876 0 0011136
Q ss_pred hHHHHHhhcCCeEEEeccEE
Q 026036 219 IFFTSCENAGLEVKHLGSRV 238 (244)
Q Consensus 219 ~~~~~l~~~Gf~v~~~~~~~ 238 (244)
.+.+.+++.||+++.+..+.
T Consensus 271 ~V~~a~~~~gf~v~~~~~~~ 290 (300)
T COG2264 271 SVAEAYEQAGFEVVEVLERE 290 (300)
T ss_pred HHHHHHHhCCCeEeEEEecC
Confidence 77888999999998876543
|
|
| >PLN02233 ubiquinone biosynthesis methyltransferase | Back alignment and domain information |
|---|
Probab=99.73 E-value=1.5e-16 Score=130.48 Aligned_cols=157 Identities=15% Similarity=0.129 Sum_probs=100.8
Q ss_pred cCcccCCeEEEeCCCCcHHHHHHHHhC--CCeEEEEeCChHHHHHHHHHhHHh--cCCCCCcceEeeecCCCCCCCCCCc
Q 026036 73 REWIERRRCIELGSGTGALAIFLRKAM--NLDITTSDYNDQEIEDNIAYNSTT--NGITPALPHIKHSWGDAFPIPNPDW 148 (244)
Q Consensus 73 ~~~~~~~~VLdlG~G~G~~~~~~a~~~--~~~v~~~D~~~~~l~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~f 148 (244)
....++.+|||+|||+|.++..+++.. ..+|+|+|+|++|+ +.++++... .....++..+..+. ..+++.+++|
T Consensus 69 ~~~~~~~~VLDlGcGtG~~~~~la~~~~~~~~V~gvD~S~~ml-~~A~~r~~~~~~~~~~~i~~~~~d~-~~lp~~~~sf 146 (261)
T PLN02233 69 SGAKMGDRVLDLCCGSGDLAFLLSEKVGSDGKVMGLDFSSEQL-AVAASRQELKAKSCYKNIEWIEGDA-TDLPFDDCYF 146 (261)
T ss_pred hCCCCCCEEEEECCcCCHHHHHHHHHhCCCCEEEEEECCHHHH-HHHHHHhhhhhhccCCCeEEEEccc-ccCCCCCCCE
Confidence 344578899999999999999888764 35899999999998 666544321 11111233333332 3456777899
Q ss_pred cEEEEcccccCCcChHHHHHHHHHHHHhcCCCCceEeecccccCCC--CCC---CCC---CCe---E--------EEeee
Q 026036 149 DLILASDILLYVKQYSNLIKSLSVLLKSYKPKDSQVGHLTKNEQGE--GTE---GLP---WPA---F--------LMSWR 209 (244)
Q Consensus 149 D~I~~~~~l~~~~~~~~l~~~l~~~~~~lk~gG~~~~~~~~~~~~~--~~~---~~~---~~~---~--------~~~~~ 209 (244)
|+|+++.++.+. ++..+++++++++|||||++++......... ... ... .+. + +....
T Consensus 147 D~V~~~~~l~~~---~d~~~~l~ei~rvLkpGG~l~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~l~~s~ 223 (261)
T PLN02233 147 DAITMGYGLRNV---VDRLKAMQEMYRVLKPGSRVSILDFNKSTQPFTTSMQEWMIDNVVVPVATGYGLAKEYEYLKSSI 223 (261)
T ss_pred eEEEEecccccC---CCHHHHHHHHHHHcCcCcEEEEEECCCCCcHHHHHHHHHHHhhhhhHHHHHhCChHHHHHHHHHH
Confidence 999999998433 3556999999999999999988844432211 000 000 000 0 00000
Q ss_pred eccCccchhhHHHHHhhcCCeEEEecc
Q 026036 210 RRIGKEDETIFFTSCENAGLEVKHLGS 236 (244)
Q Consensus 210 ~~~~~~~~~~~~~~l~~~Gf~v~~~~~ 236 (244)
.++. +.+++.++++++||+......
T Consensus 224 ~~f~--s~~el~~ll~~aGF~~~~~~~ 248 (261)
T PLN02233 224 NEYL--TGEELEKLALEAGFSSAKHYE 248 (261)
T ss_pred HhcC--CHHHHHHHHHHCCCCEEEEEE
Confidence 1222 368899999999999776543
|
|
| >COG2227 UbiG 2-polyprenyl-3-methyl-5-hydroxy-6-metoxy-1,4-benzoquinol methylase [Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=99.72 E-value=2.7e-17 Score=129.11 Aligned_cols=155 Identities=14% Similarity=0.116 Sum_probs=103.4
Q ss_pred ccCCeEEEeCCCCcHHHHHHHHhCCCeEEEEeCChHHHHHHHHHhHHhcCCCCCcceEeeecCCCCCCCCCCccEEEEcc
Q 026036 76 IERRRCIELGSGTGALAIFLRKAMNLDITTSDYNDQEIEDNIAYNSTTNGITPALPHIKHSWGDAFPIPNPDWDLILASD 155 (244)
Q Consensus 76 ~~~~~VLdlG~G~G~~~~~~a~~~~~~v~~~D~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fD~I~~~~ 155 (244)
.+|.+|||+|||-|.++..+|+. +++|+|+|++++++ +.++..+..+++. +....... +.+....++||+|+|..
T Consensus 58 l~g~~vLDvGCGgG~Lse~mAr~-Ga~VtgiD~se~~I-~~Ak~ha~e~gv~--i~y~~~~~-edl~~~~~~FDvV~cmE 132 (243)
T COG2227 58 LPGLRVLDVGCGGGILSEPLARL-GASVTGIDASEKPI-EVAKLHALESGVN--IDYRQATV-EDLASAGGQFDVVTCME 132 (243)
T ss_pred CCCCeEEEecCCccHhhHHHHHC-CCeeEEecCChHHH-HHHHHhhhhcccc--ccchhhhH-HHHHhcCCCccEEEEhh
Confidence 58999999999999999999987 69999999999988 8888888877772 11211111 11222237999999999
Q ss_pred cccCCcChHHHHHHHHHHHHhcCCCCceEeecccccCCCCC--CCCCCCe--EE--Eeee-eccCccchhhHHHHHhhcC
Q 026036 156 ILLYVKQYSNLIKSLSVLLKSYKPKDSQVGHLTKNEQGEGT--EGLPWPA--FL--MSWR-RRIGKEDETIFFTSCENAG 228 (244)
Q Consensus 156 ~l~~~~~~~~l~~~l~~~~~~lk~gG~~~~~~~~~~~~~~~--~~~~~~~--~~--~~~~-~~~~~~~~~~~~~~l~~~G 228 (244)
|+ .| .++....++.+.+++||||.+++++.+....... ....... |. ..|. +.+.. .+++...+...|
T Consensus 133 Vl-EH--v~dp~~~~~~c~~lvkP~G~lf~STinrt~ka~~~~i~~ae~vl~~vP~gTH~~~k~ir--p~El~~~~~~~~ 207 (243)
T COG2227 133 VL-EH--VPDPESFLRACAKLVKPGGILFLSTINRTLKAYLLAIIGAEYVLRIVPKGTHDYRKFIK--PAELIRWLLGAN 207 (243)
T ss_pred HH-Hc--cCCHHHHHHHHHHHcCCCcEEEEeccccCHHHHHHHHHHHHHHHHhcCCcchhHHHhcC--HHHHHHhcccCC
Confidence 99 44 3444489999999999999999985543211000 0000000 00 0011 12222 366777777889
Q ss_pred CeEEEeccEEEE
Q 026036 229 LEVKHLGSRVYC 240 (244)
Q Consensus 229 f~v~~~~~~~~~ 240 (244)
+++.+.....|.
T Consensus 208 ~~~~~~~g~~y~ 219 (243)
T COG2227 208 LKIIDRKGLTYN 219 (243)
T ss_pred ceEEeecceEec
Confidence 999888776654
|
|
| >PRK14966 unknown domain/N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase fusion protein; Provisional | Back alignment and domain information |
|---|
Probab=99.72 E-value=1.1e-16 Score=136.60 Aligned_cols=201 Identities=14% Similarity=0.147 Sum_probs=138.0
Q ss_pred CcccCCCCCCccCCCCCCCcccccccccceeeeecccCCceEEEEecccCCC------CcceeechHHHHHHHHhhccCc
Q 026036 2 DVALFSPSSLFAEEDDVTVDEETMETCNGYVERPHQFPEMELVIREFAFHQL------NANFLWPGTFSFAEWLMHHREW 75 (244)
Q Consensus 2 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~w~~~~~l~~~~~~~~~~ 75 (244)
++++.++.+++...+...++ +....+...++|+....+..+.+....+++. +.....|.++.+.+.+.....
T Consensus 173 ~~l~~~r~~l~~~~~~~l~~-~~~~~~~~~v~RR~~gePlqYIlG~~~F~G~~f~V~p~vLIPRpeTE~LVe~aL~~l~- 250 (423)
T PRK14966 173 YASEYTRVQLLTRGGEEMPD-EVRQRADRLAQRRLNGEPVAYILGVREFYGRRFAVNPNVLIPRPETEHLVEAVLARLP- 250 (423)
T ss_pred HHHCcCHHHHhhCCcccCCH-HHHHHHHHHHHHHHcCCCceeEeeeeeecCcEEEeCCCccCCCccHHHHHHHhhhccC-
Confidence 45667788888887777776 4556677777777666667777777665543 124456778899998876543
Q ss_pred ccCCeEEEeCCCCcHHHHHHHHhC-CCeEEEEeCChHHHHHHHHHhHHhcCCCCCcceEeeecCCCCCCCCCCccEEEEc
Q 026036 76 IERRRCIELGSGTGALAIFLRKAM-NLDITTSDYNDQEIEDNIAYNSTTNGITPALPHIKHSWGDAFPIPNPDWDLILAS 154 (244)
Q Consensus 76 ~~~~~VLdlG~G~G~~~~~~a~~~-~~~v~~~D~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fD~I~~~ 154 (244)
++.+|||+|||+|.+++.++... ..+|+++|+|+.++ +.+++|+..++. ++..+..++.+......++||+|+||
T Consensus 251 -~~~rVLDLGcGSG~IaiaLA~~~p~a~VtAVDiS~~AL-e~AreNa~~~g~--rV~fi~gDl~e~~l~~~~~FDLIVSN 326 (423)
T PRK14966 251 -ENGRVWDLGTGSGAVAVTVALERPDAFVRASDISPPAL-ETARKNAADLGA--RVEFAHGSWFDTDMPSEGKWDIIVSN 326 (423)
T ss_pred -CCCEEEEEeChhhHHHHHHHHhCCCCEEEEEECCHHHH-HHHHHHHHHcCC--cEEEEEcchhccccccCCCccEEEEC
Confidence 55699999999999999988764 67999999999998 889999887664 34455545433211123479999998
Q ss_pred ccccCCcCh-----------------------HHHHHHHHHHHHhcCCCCceEeecccccCCCCCCCCCCCeEEEeeeec
Q 026036 155 DILLYVKQY-----------------------SNLIKSLSVLLKSYKPKDSQVGHLTKNEQGEGTEGLPWPAFLMSWRRR 211 (244)
Q Consensus 155 ~~l~~~~~~-----------------------~~l~~~l~~~~~~lk~gG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 211 (244)
.+. ..... ....+.++.+.+.|+|||.+++.+ .
T Consensus 327 PPY-I~~~e~~l~~~~v~~EP~~AL~gG~dGL~~yr~Ii~~a~~~LkpgG~lilEi-----------------------G 382 (423)
T PRK14966 327 PPY-IENGDKHLLQGDLRFEPQIALTDFSDGLSCIRTLAQGAPDRLAEGGFLLLEH-----------------------G 382 (423)
T ss_pred CCC-CCcchhhhcchhhhcCHHHHhhCCCchHHHHHHHHHHHHHhcCCCcEEEEEE-----------------------C
Confidence 874 22110 112366677778999999766531 1
Q ss_pred cCccchhhHHHHHhhcCCeEEEe
Q 026036 212 IGKEDETIFFTSCENAGLEVKHL 234 (244)
Q Consensus 212 ~~~~~~~~~~~~l~~~Gf~v~~~ 234 (244)
. ...+.+.+++++.||....+
T Consensus 383 ~--~Q~e~V~~ll~~~Gf~~v~v 403 (423)
T PRK14966 383 F--DQGAAVRGVLAENGFSGVET 403 (423)
T ss_pred c--cHHHHHHHHHHHCCCcEEEE
Confidence 1 12367788888899875544
|
|
| >KOG3201 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.71 E-value=9.8e-18 Score=122.79 Aligned_cols=156 Identities=20% Similarity=0.356 Sum_probs=114.4
Q ss_pred CCCcceeechHHHHHHHHhhccCcccCCeEEEeCCC-CcHHHHHHHHhC-CCeEEEEeCChHHHHHHHHHhHHhcCCCC-
Q 026036 52 QLNANFLWPGTFSFAEWLMHHREWIERRRCIELGSG-TGALAIFLRKAM-NLDITTSDYNDQEIEDNIAYNSTTNGITP- 128 (244)
Q Consensus 52 ~~~~~~~w~~~~~l~~~~~~~~~~~~~~~VLdlG~G-~G~~~~~~a~~~-~~~v~~~D~~~~~l~~~~~~~~~~~~~~~- 128 (244)
.++...+||+.+.|+.+++..+....|.+|||||.| +|+.++++|... ...|..+|-+++.+ ++.++-...|..+.
T Consensus 4 ntgnvciwpseeala~~~l~~~n~~rg~~ilelgggft~laglmia~~a~~~~v~ltdgne~sv-rnv~ki~~~n~~s~~ 82 (201)
T KOG3201|consen 4 NTGNVCIWPSEEALAWTILRDPNKIRGRRILELGGGFTGLAGLMIACKAPDSSVWLTDGNEESV-RNVEKIRNSNMASSL 82 (201)
T ss_pred CCCcEEecccHHHHHHHHHhchhHHhHHHHHHhcCchhhhhhhheeeecCCceEEEecCCHHHH-HHHHHHHhccccccc
Confidence 344478999999999999999999999999999999 777788887665 67799999999987 77776555553321
Q ss_pred -CcceEeee-cCCCCCCCCCCccEEEEcccccCCcChHHHHHHHHHHHHhcCCCCceEeecccccCCCCCCCCCCCeEEE
Q 026036 129 -ALPHIKHS-WGDAFPIPNPDWDLILASDILLYVKQYSNLIKSLSVLLKSYKPKDSQVGHLTKNEQGEGTEGLPWPAFLM 206 (244)
Q Consensus 129 -~~~~~~~~-~~~~~~~~~~~fD~I~~~~~l~~~~~~~~l~~~l~~~~~~lk~gG~~~~~~~~~~~~~~~~~~~~~~~~~ 206 (244)
++..+... |++........||.|+++||+|+.+...+|+++ +...|+|.|+-++
T Consensus 83 tsc~vlrw~~~~aqsq~eq~tFDiIlaADClFfdE~h~sLvdt---Ik~lL~p~g~Al~--------------------- 138 (201)
T KOG3201|consen 83 TSCCVLRWLIWGAQSQQEQHTFDIILAADCLFFDEHHESLVDT---IKSLLRPSGRALL--------------------- 138 (201)
T ss_pred ceehhhHHHHhhhHHHHhhCcccEEEeccchhHHHHHHHHHHH---HHHHhCcccceeE---------------------
Confidence 22222222 333333444589999999999988877755555 6778899997333
Q ss_pred eeeeccCccchhhHHHHHhhcCCeEEEe
Q 026036 207 SWRRRIGKEDETIFFTSCENAGLEVKHL 234 (244)
Q Consensus 207 ~~~~~~~~~~~~~~~~~l~~~Gf~v~~~ 234 (244)
..||++ .+.+.|.+.++..||.+...
T Consensus 139 -fsPRRg-~sL~kF~de~~~~gf~v~l~ 164 (201)
T KOG3201|consen 139 -FSPRRG-QSLQKFLDEVGTVGFTVCLE 164 (201)
T ss_pred -ecCccc-chHHHHHHHHHhceeEEEec
Confidence 223333 24589999999999988754
|
|
| >PF06325 PrmA: Ribosomal protein L11 methyltransferase (PrmA); InterPro: IPR010456 This family consists of several Ribosomal protein L11 methyltransferase sequences | Back alignment and domain information |
|---|
Probab=99.70 E-value=3.8e-16 Score=128.88 Aligned_cols=139 Identities=19% Similarity=0.205 Sum_probs=101.2
Q ss_pred chHHHHHHHHhhccCcccCCeEEEeCCCCcHHHHHHHHhCCCeEEEEeCChHHHHHHHHHhHHhcCCCCCcceEeeecCC
Q 026036 60 PGTFSFAEWLMHHREWIERRRCIELGSGTGALAIFLRKAMNLDITTSDYNDQEIEDNIAYNSTTNGITPALPHIKHSWGD 139 (244)
Q Consensus 60 ~~~~~l~~~~~~~~~~~~~~~VLdlG~G~G~~~~~~a~~~~~~v~~~D~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 139 (244)
|.+....+++.+.. .+|++|||+|||||.+++++++.+..+|+|+|+++.++ +.++.|+..|++..++... .
T Consensus 146 ~TT~lcl~~l~~~~--~~g~~vLDvG~GSGILaiaA~klGA~~v~a~DiDp~Av-~~a~~N~~~N~~~~~~~v~-----~ 217 (295)
T PF06325_consen 146 PTTRLCLELLEKYV--KPGKRVLDVGCGSGILAIAAAKLGAKKVVAIDIDPLAV-EAARENAELNGVEDRIEVS-----L 217 (295)
T ss_dssp HHHHHHHHHHHHHS--STTSEEEEES-TTSHHHHHHHHTTBSEEEEEESSCHHH-HHHHHHHHHTT-TTCEEES-----C
T ss_pred HHHHHHHHHHHHhc--cCCCEEEEeCCcHHHHHHHHHHcCCCeEEEecCCHHHH-HHHHHHHHHcCCCeeEEEE-----E
Confidence 45555556666553 47889999999999999999998888999999999987 8999999999996644221 1
Q ss_pred CCCCCCCCccEEEEcccccCCcChHHHHHHHHHHHHhcCCCCceEeecccccCCCCCCCCCCCeEEEeeeeccCccchhh
Q 026036 140 AFPIPNPDWDLILASDILLYVKQYSNLIKSLSVLLKSYKPKDSQVGHLTKNEQGEGTEGLPWPAFLMSWRRRIGKEDETI 219 (244)
Q Consensus 140 ~~~~~~~~fD~I~~~~~l~~~~~~~~l~~~l~~~~~~lk~gG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 219 (244)
......++||+|++|=. .+.+...+..+.+.++|||.++++ ---. ...+.
T Consensus 218 ~~~~~~~~~dlvvANI~------~~vL~~l~~~~~~~l~~~G~lIlS---------------------GIl~---~~~~~ 267 (295)
T PF06325_consen 218 SEDLVEGKFDLVVANIL------ADVLLELAPDIASLLKPGGYLILS---------------------GILE---EQEDE 267 (295)
T ss_dssp TSCTCCS-EEEEEEES-------HHHHHHHHHHCHHHEEEEEEEEEE---------------------EEEG---GGHHH
T ss_pred ecccccccCCEEEECCC------HHHHHHHHHHHHHhhCCCCEEEEc---------------------cccH---HHHHH
Confidence 22223478999998633 467778889999999999988876 1111 22467
Q ss_pred HHHHHhhcCCeEEEeccE
Q 026036 220 FFTSCENAGLEVKHLGSR 237 (244)
Q Consensus 220 ~~~~l~~~Gf~v~~~~~~ 237 (244)
+.+.+++ ||++.+...+
T Consensus 268 v~~a~~~-g~~~~~~~~~ 284 (295)
T PF06325_consen 268 VIEAYKQ-GFELVEEREE 284 (295)
T ss_dssp HHHHHHT-TEEEEEEEEE
T ss_pred HHHHHHC-CCEEEEEEEE
Confidence 7778876 9998876543
|
Its genetic determinant is prmA, which forms a bifunctional operon with the downstream panF gene []. The role of L11 methylation in ribosome function is, as yet, unknown. Deletion of the prmA gene in Escherichia coli showed no obvious effect [] except for the production of undermethylated forms of L11 []. Methylation is the most common post-transcriptional modification to ribosomal proteins in all organisms. PrmA is the only bacterial enzyme that catalyses the methylation of a ribosomal protein [].; GO: 0008276 protein methyltransferase activity, 0006479 protein methylation, 0005737 cytoplasm; PDB: 3GRZ_B 1F3L_A 2NXJ_B 3CJT_I 3CJQ_G 2NXE_A 2NXC_A 2ZBP_A 3EGV_A 3CJS_A .... |
| >PLN02336 phosphoethanolamine N-methyltransferase | Back alignment and domain information |
|---|
Probab=99.70 E-value=2.1e-16 Score=140.46 Aligned_cols=166 Identities=11% Similarity=0.170 Sum_probs=107.5
Q ss_pred chHHHHHHHHhhccCcccCCeEEEeCCCCcHHHHHHHHhCCCeEEEEeCChHHHHHHHHHhHHhcCCCCCcceEeeecCC
Q 026036 60 PGTFSFAEWLMHHREWIERRRCIELGSGTGALAIFLRKAMNLDITTSDYNDQEIEDNIAYNSTTNGITPALPHIKHSWGD 139 (244)
Q Consensus 60 ~~~~~l~~~~~~~~~~~~~~~VLdlG~G~G~~~~~~a~~~~~~v~~~D~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 139 (244)
+.+..-.+.+.+.....++.+|||||||+|.+++.++...+.+|+|+|+|+.++ +.++++... ...++..+..++.+
T Consensus 249 ~~~v~~te~l~~~~~~~~~~~vLDiGcG~G~~~~~la~~~~~~v~gvDiS~~~l-~~A~~~~~~--~~~~v~~~~~d~~~ 325 (475)
T PLN02336 249 TGGLETTKEFVDKLDLKPGQKVLDVGCGIGGGDFYMAENFDVHVVGIDLSVNMI-SFALERAIG--RKCSVEFEVADCTK 325 (475)
T ss_pred CchHHHHHHHHHhcCCCCCCEEEEEeccCCHHHHHHHHhcCCEEEEEECCHHHH-HHHHHHhhc--CCCceEEEEcCccc
Confidence 333333344444444457789999999999999999887788999999999987 677666542 22233333333322
Q ss_pred CCCCCCCCccEEEEcccccCCcChHHHHHHHHHHHHhcCCCCceEeecccccCCCCCCCCCCCeEEEeeeeccCccchhh
Q 026036 140 AFPIPNPDWDLILASDILLYVKQYSNLIKSLSVLLKSYKPKDSQVGHLTKNEQGEGTEGLPWPAFLMSWRRRIGKEDETI 219 (244)
Q Consensus 140 ~~~~~~~~fD~I~~~~~l~~~~~~~~l~~~l~~~~~~lk~gG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 219 (244)
.++++++||+|++.+++++.. +..+.++++++.|||||++++..+......... ....++.... ....+.+.
T Consensus 326 -~~~~~~~fD~I~s~~~l~h~~---d~~~~l~~~~r~LkpgG~l~i~~~~~~~~~~~~--~~~~~~~~~g--~~~~~~~~ 397 (475)
T PLN02336 326 -KTYPDNSFDVIYSRDTILHIQ---DKPALFRSFFKWLKPGGKVLISDYCRSPGTPSP--EFAEYIKQRG--YDLHDVQA 397 (475)
T ss_pred -CCCCCCCEEEEEECCcccccC---CHHHHHHHHHHHcCCCeEEEEEEeccCCCCCcH--HHHHHHHhcC--CCCCCHHH
Confidence 344567899999999994443 445899999999999999988754332211000 0000110111 11223578
Q ss_pred HHHHHhhcCCeEEEecc
Q 026036 220 FFTSCENAGLEVKHLGS 236 (244)
Q Consensus 220 ~~~~l~~~Gf~v~~~~~ 236 (244)
+.++++++||++..+.+
T Consensus 398 ~~~~l~~aGF~~i~~~d 414 (475)
T PLN02336 398 YGQMLKDAGFDDVIAED 414 (475)
T ss_pred HHHHHHHCCCeeeeeec
Confidence 89999999999887654
|
|
| >PF08003 Methyltransf_9: Protein of unknown function (DUF1698); InterPro: IPR010017 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals | Back alignment and domain information |
|---|
Probab=99.70 E-value=4.4e-16 Score=126.54 Aligned_cols=166 Identities=15% Similarity=0.156 Sum_probs=105.9
Q ss_pred echHHHHHHHHhhccCcccCCeEEEeCCCCcHHHHHHHHhCCCeEEEEeCChHHHHH--HHHHhHHhcCCCCCcceEeee
Q 026036 59 WPGTFSFAEWLMHHREWIERRRCIELGSGTGALAIFLRKAMNLDITTSDYNDQEIED--NIAYNSTTNGITPALPHIKHS 136 (244)
Q Consensus 59 w~~~~~l~~~~~~~~~~~~~~~VLdlG~G~G~~~~~~a~~~~~~v~~~D~~~~~l~~--~~~~~~~~~~~~~~~~~~~~~ 136 (244)
|.+.....+ +..+....+|++|||||||+|..+..++..++..|+|+|.+...+.. .+++-+. .. .....+.
T Consensus 98 WrSd~KW~r-l~p~l~~L~gk~VLDIGC~nGY~~frM~~~GA~~ViGiDP~~lf~~QF~~i~~~lg---~~--~~~~~lp 171 (315)
T PF08003_consen 98 WRSDWKWDR-LLPHLPDLKGKRVLDIGCNNGYYSFRMLGRGAKSVIGIDPSPLFYLQFEAIKHFLG---QD--PPVFELP 171 (315)
T ss_pred ccccchHHH-HHhhhCCcCCCEEEEecCCCcHHHHHHhhcCCCEEEEECCChHHHHHHHHHHHHhC---CC--ccEEEcC
Confidence 445444444 33344467999999999999999999998888889999998853322 2222211 11 1112221
Q ss_pred cC-CCCCCCCCCccEEEEcccccCCcChHHHHHHHHHHHHhcCCCCceEeecccccCCCCCCCCCCCeEEEeeeeccCcc
Q 026036 137 WG-DAFPIPNPDWDLILASDILLYVKQYSNLIKSLSVLLKSYKPKDSQVGHLTKNEQGEGTEGLPWPAFLMSWRRRIGKE 215 (244)
Q Consensus 137 ~~-~~~~~~~~~fD~I~~~~~l~~~~~~~~l~~~l~~~~~~lk~gG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 215 (244)
.+ +.++. .+.||+|+|..|+||..+ ....|+++...|++||.+++-+...+........+...+- ..+.-+...
T Consensus 172 lgvE~Lp~-~~~FDtVF~MGVLYHrr~---Pl~~L~~Lk~~L~~gGeLvLETlvi~g~~~~~L~P~~rYa-~m~nv~FiP 246 (315)
T PF08003_consen 172 LGVEDLPN-LGAFDTVFSMGVLYHRRS---PLDHLKQLKDSLRPGGELVLETLVIDGDENTVLVPEDRYA-KMRNVWFIP 246 (315)
T ss_pred cchhhccc-cCCcCEEEEeeehhccCC---HHHHHHHHHHhhCCCCEEEEEEeeecCCCceEEccCCccc-CCCceEEeC
Confidence 11 34454 678999999999977543 3489999999999999999885544443322221211111 111112224
Q ss_pred chhhHHHHHhhcCCeEEEec
Q 026036 216 DETIFFTSCENAGLEVKHLG 235 (244)
Q Consensus 216 ~~~~~~~~l~~~Gf~v~~~~ 235 (244)
+...+..+|+++||+.+++-
T Consensus 247 s~~~L~~wl~r~gF~~v~~v 266 (315)
T PF08003_consen 247 SVAALKNWLERAGFKDVRCV 266 (315)
T ss_pred CHHHHHHHHHHcCCceEEEe
Confidence 57889999999999877654
|
The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. This entry represents a set of bacterial AdoMet-dependent tRNA (mo5U34)-methyltransferases. These enzymes catalyse the conversion of 5-hydroxyuridine (ho5U) to 5-methoxyuridine (mo5U) at the wobble position (34) of tRNA []. The 5-methoxyuridine is subsequently converted to uridine-5-oxyacetic acid, a modified nucleoside that is apparently necessary for the efficient decoding of G-ending Pro, Ala, and Val codons in these organisms [].; GO: 0016300 tRNA (uracil) methyltransferase activity, 0002098 tRNA wobble uridine modification |
| >PRK11207 tellurite resistance protein TehB; Provisional | Back alignment and domain information |
|---|
Probab=99.70 E-value=1.3e-15 Score=119.92 Aligned_cols=106 Identities=17% Similarity=0.318 Sum_probs=80.3
Q ss_pred cccCCeEEEeCCCCcHHHHHHHHhCCCeEEEEeCChHHHHHHHHHhHHhcCCCCCcceEeeecCCCCCCCCCCccEEEEc
Q 026036 75 WIERRRCIELGSGTGALAIFLRKAMNLDITTSDYNDQEIEDNIAYNSTTNGITPALPHIKHSWGDAFPIPNPDWDLILAS 154 (244)
Q Consensus 75 ~~~~~~VLdlG~G~G~~~~~~a~~~~~~v~~~D~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fD~I~~~ 154 (244)
..++.+|||+|||+|..+..+++. +.+|+++|+|+.++ +.++++...++++ .+..+..+..+ .+. .++||+|+++
T Consensus 28 ~~~~~~vLDiGcG~G~~a~~La~~-g~~V~gvD~S~~~i-~~a~~~~~~~~~~-~v~~~~~d~~~-~~~-~~~fD~I~~~ 102 (197)
T PRK11207 28 VVKPGKTLDLGCGNGRNSLYLAAN-GFDVTAWDKNPMSI-ANLERIKAAENLD-NLHTAVVDLNN-LTF-DGEYDFILST 102 (197)
T ss_pred cCCCCcEEEECCCCCHHHHHHHHC-CCEEEEEeCCHHHH-HHHHHHHHHcCCC-cceEEecChhh-CCc-CCCcCEEEEe
Confidence 346689999999999999999886 67999999999987 7777777766652 23333333322 222 3579999999
Q ss_pred ccccCCcChHHHHHHHHHHHHhcCCCCceEee
Q 026036 155 DILLYVKQYSNLIKSLSVLLKSYKPKDSQVGH 186 (244)
Q Consensus 155 ~~l~~~~~~~~l~~~l~~~~~~lk~gG~~~~~ 186 (244)
.++ ++.....+...++++.+.|||||.+++.
T Consensus 103 ~~~-~~~~~~~~~~~l~~i~~~LkpgG~~~~~ 133 (197)
T PRK11207 103 VVL-MFLEAKTIPGLIANMQRCTKPGGYNLIV 133 (197)
T ss_pred cch-hhCCHHHHHHHHHHHHHHcCCCcEEEEE
Confidence 998 4444556779999999999999996654
|
|
| >PRK00107 gidB 16S rRNA methyltransferase GidB; Reviewed | Back alignment and domain information |
|---|
Probab=99.68 E-value=2.4e-15 Score=116.86 Aligned_cols=123 Identities=19% Similarity=0.223 Sum_probs=92.1
Q ss_pred cCCeEEEeCCCCcHHHHHHHHhC-CCeEEEEeCChHHHHHHHHHhHHhcCCCCCcceEeeecCCCCCCCCCCccEEEEcc
Q 026036 77 ERRRCIELGSGTGALAIFLRKAM-NLDITTSDYNDQEIEDNIAYNSTTNGITPALPHIKHSWGDAFPIPNPDWDLILASD 155 (244)
Q Consensus 77 ~~~~VLdlG~G~G~~~~~~a~~~-~~~v~~~D~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fD~I~~~~ 155 (244)
++.+|||+|||+|..++.+++.. +.+|+++|+++.++ +.++++...+++++ +..+..+..+ ... .++||+|+++.
T Consensus 45 ~g~~VLDiGcGtG~~al~la~~~~~~~V~giD~s~~~l-~~A~~~~~~~~l~~-i~~~~~d~~~-~~~-~~~fDlV~~~~ 120 (187)
T PRK00107 45 GGERVLDVGSGAGFPGIPLAIARPELKVTLVDSLGKKI-AFLREVAAELGLKN-VTVVHGRAEE-FGQ-EEKFDVVTSRA 120 (187)
T ss_pred CCCeEEEEcCCCCHHHHHHHHHCCCCeEEEEeCcHHHH-HHHHHHHHHcCCCC-EEEEeccHhh-CCC-CCCccEEEEcc
Confidence 47899999999999999888654 68999999999987 88888888887743 4444444333 233 56899999964
Q ss_pred cccCCcChHHHHHHHHHHHHhcCCCCceEeecccccCCCCCCCCCCCeEEEeeeeccCccchhhHHHHHhhcCCeEEEec
Q 026036 156 ILLYVKQYSNLIKSLSVLLKSYKPKDSQVGHLTKNEQGEGTEGLPWPAFLMSWRRRIGKEDETIFFTSCENAGLEVKHLG 235 (244)
Q Consensus 156 ~l~~~~~~~~l~~~l~~~~~~lk~gG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gf~v~~~~ 235 (244)
. .++...++.+++.|||||++++.. ... ....+.++.+..|+.+..+.
T Consensus 121 ~-------~~~~~~l~~~~~~LkpGG~lv~~~---------------------~~~----~~~~l~~~~~~~~~~~~~~~ 168 (187)
T PRK00107 121 V-------ASLSDLVELCLPLLKPGGRFLALK---------------------GRD----PEEEIAELPKALGGKVEEVI 168 (187)
T ss_pred c-------cCHHHHHHHHHHhcCCCeEEEEEe---------------------CCC----hHHHHHHHHHhcCceEeeeE
Confidence 2 234588899999999999887751 111 13577888888899877664
|
|
| >PRK01544 bifunctional N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase/tRNA (m7G46) methyltransferase; Reviewed | Back alignment and domain information |
|---|
Probab=99.68 E-value=2.1e-16 Score=140.42 Aligned_cols=204 Identities=14% Similarity=0.184 Sum_probs=136.6
Q ss_pred CcccCCCCCCccCCCCCCCcccccccccceeeeecccCCceEEEEecccCCCC------cceeechHHHHHHHHhhccC-
Q 026036 2 DVALFSPSSLFAEEDDVTVDEETMETCNGYVERPHQFPEMELVIREFAFHQLN------ANFLWPGTFSFAEWLMHHRE- 74 (244)
Q Consensus 2 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~w~~~~~l~~~~~~~~~- 74 (244)
+++++++..++...+...++ +....+...++|+....+..+.+.+..+++.. -....|.++.|+++++....
T Consensus 34 ~~l~~~~~~l~~~~~~~l~~-~~~~~~~~~~~rr~~~ePlqYI~G~~~F~g~~f~V~~~VLIPRpeTE~Lve~~l~~~~~ 112 (506)
T PRK01544 34 HVINKPIEYLLINLDEQLNE-AEIEAFEKLLERRLKHEPIAYITGVKEFYSREFIVNKHVLIPRSDTEVLVDVVFQCHSR 112 (506)
T ss_pred HHHCcCHHHHhhccCCCCCH-HHHHHHHHHHHHHHcCCCHHHHhCcCEEcCcEEEeCCCcccCCCcHHHHHHHHHHHhhh
Confidence 45667777888777766666 44555666667765544455555555444321 36678889999999865421
Q ss_pred -----------------------cccCCeEEEeCCCCcHHHHHHHHhC-CCeEEEEeCChHHHHHHHHHhHHhcCCCCCc
Q 026036 75 -----------------------WIERRRCIELGSGTGALAIFLRKAM-NLDITTSDYNDQEIEDNIAYNSTTNGITPAL 130 (244)
Q Consensus 75 -----------------------~~~~~~VLdlG~G~G~~~~~~a~~~-~~~v~~~D~~~~~l~~~~~~~~~~~~~~~~~ 130 (244)
..++.+|||+|||+|.+++.++... +.+|+++|+|+.++ +.+++|+..+++..++
T Consensus 113 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~VLDlG~GsG~iai~la~~~p~~~v~avDis~~al-~~A~~N~~~~~l~~~v 191 (506)
T PRK01544 113 ESGNPEKKQLNPCFRGNDISSNCNDKFLNILELGTGSGCIAISLLCELPNANVIATDISLDAI-EVAKSNAIKYEVTDRI 191 (506)
T ss_pred ccccccccccccccccccccccccCCCCEEEEccCchhHHHHHHHHHCCCCeEEEEECCHHHH-HHHHHHHHHcCCccce
Confidence 1134689999999999999888765 67999999999987 8899998888775555
Q ss_pred ceEeeecCCCCCCCCCCccEEEEcccccCCcC-----------------------hHHHHHHHHHHHHhcCCCCceEeec
Q 026036 131 PHIKHSWGDAFPIPNPDWDLILASDILLYVKQ-----------------------YSNLIKSLSVLLKSYKPKDSQVGHL 187 (244)
Q Consensus 131 ~~~~~~~~~~~~~~~~~fD~I~~~~~l~~~~~-----------------------~~~l~~~l~~~~~~lk~gG~~~~~~ 187 (244)
..+..++.+.. ..++||+|+++.+...... .....+.++.+.+.|+|||.+++.+
T Consensus 192 ~~~~~D~~~~~--~~~~fDlIvsNPPYi~~~~~~~l~~~v~~~EP~~AL~gg~dGl~~~~~il~~a~~~L~~gG~l~lEi 269 (506)
T PRK01544 192 QIIHSNWFENI--EKQKFDFIVSNPPYISHSEKSEMAIETINYEPSIALFAEEDGLQAYFIIAENAKQFLKPNGKIILEI 269 (506)
T ss_pred eeeecchhhhC--cCCCccEEEECCCCCCchhhhhcCchhhccCcHHHhcCCccHHHHHHHHHHHHHHhccCCCEEEEEE
Confidence 55544443322 2457999999876432111 0123356678889999999877641
Q ss_pred ccccCCCCCCCCCCCeEEEeeeeccCccchhhHHHHHhhcCCeEEEe
Q 026036 188 TKNEQGEGTEGLPWPAFLMSWRRRIGKEDETIFFTSCENAGLEVKHL 234 (244)
Q Consensus 188 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gf~v~~~ 234 (244)
. . ...+.+.+++++.||..+.+
T Consensus 270 g-----------------------~--~q~~~v~~~~~~~g~~~~~~ 291 (506)
T PRK01544 270 G-----------------------F--KQEEAVTQIFLDHGYNIESV 291 (506)
T ss_pred C-----------------------C--chHHHHHHHHHhcCCCceEE
Confidence 0 1 11356677888888875543
|
|
| >PRK15001 SAM-dependent 23S ribosomal RNA mG1835 methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.67 E-value=2.1e-15 Score=128.60 Aligned_cols=117 Identities=13% Similarity=0.095 Sum_probs=85.5
Q ss_pred HHhhccCcccCCeEEEeCCCCcHHHHHHHHhC-CCeEEEEeCChHHHHHHHHHhHHhcCCCCCcceEeeecCCCCCC-CC
Q 026036 68 WLMHHREWIERRRCIELGSGTGALAIFLRKAM-NLDITTSDYNDQEIEDNIAYNSTTNGITPALPHIKHSWGDAFPI-PN 145 (244)
Q Consensus 68 ~~~~~~~~~~~~~VLdlG~G~G~~~~~~a~~~-~~~v~~~D~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~ 145 (244)
+++++.+...+.+|||||||+|.+++.+++.. ..+|+++|+|+.++ +.+++|...|.... ...+.+.+.+.+.. ..
T Consensus 219 llL~~lp~~~~~~VLDLGCGtGvi~i~la~~~P~~~V~~vD~S~~Av-~~A~~N~~~n~~~~-~~~v~~~~~D~l~~~~~ 296 (378)
T PRK15001 219 FFMQHLPENLEGEIVDLGCGNGVIGLTLLDKNPQAKVVFVDESPMAV-ASSRLNVETNMPEA-LDRCEFMINNALSGVEP 296 (378)
T ss_pred HHHHhCCcccCCeEEEEeccccHHHHHHHHhCCCCEEEEEECCHHHH-HHHHHHHHHcCccc-CceEEEEEccccccCCC
Confidence 34444433345699999999999999998876 67999999999987 88999988876421 22345555554432 23
Q ss_pred CCccEEEEcccccCCc--ChHHHHHHHHHHHHhcCCCCceEee
Q 026036 146 PDWDLILASDILLYVK--QYSNLIKSLSVLLKSYKPKDSQVGH 186 (244)
Q Consensus 146 ~~fD~I~~~~~l~~~~--~~~~l~~~l~~~~~~lk~gG~~~~~ 186 (244)
.+||+|+||.+++... ......++++.+.+.|+|||.++++
T Consensus 297 ~~fDlIlsNPPfh~~~~~~~~ia~~l~~~a~~~LkpGG~L~iV 339 (378)
T PRK15001 297 FRFNAVLCNPPFHQQHALTDNVAWEMFHHARRCLKINGELYIV 339 (378)
T ss_pred CCEEEEEECcCcccCccCCHHHHHHHHHHHHHhcccCCEEEEE
Confidence 5899999998874321 1233458889999999999998887
|
|
| >PF08241 Methyltransf_11: Methyltransferase domain; InterPro: IPR013216 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (SAM) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals | Back alignment and domain information |
|---|
Probab=99.67 E-value=3.2e-16 Score=108.31 Aligned_cols=95 Identities=19% Similarity=0.376 Sum_probs=72.6
Q ss_pred EEeCCCCcHHHHHHHHhCCCeEEEEeCChHHHHHHHHHhHHhcCCCCCcceEeeecCCCCCCCCCCccEEEEcccccCCc
Q 026036 82 IELGSGTGALAIFLRKAMNLDITTSDYNDQEIEDNIAYNSTTNGITPALPHIKHSWGDAFPIPNPDWDLILASDILLYVK 161 (244)
Q Consensus 82 LdlG~G~G~~~~~~a~~~~~~v~~~D~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fD~I~~~~~l~~~~ 161 (244)
||+|||+|..+..+++..+.+|+++|++++++ +.++++....+. ..+..+. ..+++++++||+|+++.++++.
T Consensus 1 LdiG~G~G~~~~~l~~~~~~~v~~~D~~~~~~-~~~~~~~~~~~~----~~~~~d~-~~l~~~~~sfD~v~~~~~~~~~- 73 (95)
T PF08241_consen 1 LDIGCGTGRFAAALAKRGGASVTGIDISEEML-EQARKRLKNEGV----SFRQGDA-EDLPFPDNSFDVVFSNSVLHHL- 73 (95)
T ss_dssp EEET-TTSHHHHHHHHTTTCEEEEEES-HHHH-HHHHHHTTTSTE----EEEESBT-TSSSS-TT-EEEEEEESHGGGS-
T ss_pred CEecCcCCHHHHHHHhccCCEEEEEeCCHHHH-HHHHhcccccCc----hheeehH-HhCccccccccccccccceeec-
Confidence 89999999999999887688999999999987 677766554433 2333333 4458888999999999999443
Q ss_pred ChHHHHHHHHHHHHhcCCCCceEe
Q 026036 162 QYSNLIKSLSVLLKSYKPKDSQVG 185 (244)
Q Consensus 162 ~~~~l~~~l~~~~~~lk~gG~~~~ 185 (244)
++..+.++++.|+|||||++++
T Consensus 74 --~~~~~~l~e~~rvLk~gG~l~~ 95 (95)
T PF08241_consen 74 --EDPEAALREIYRVLKPGGRLVI 95 (95)
T ss_dssp --SHHHHHHHHHHHHEEEEEEEEE
T ss_pred --cCHHHHHHHHHHHcCcCeEEeC
Confidence 6677999999999999998764
|
The reaction is catalyzed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. This entry represents a methyltransferase domain found in a large variety of SAM-dependent methyltransferases including, but not limited to: Arsenite methyltransferase (2.1.1.137 from EC) which converts arsenical compounds to their methylated forms [] Biotin synthesis protein bioC, which is involved in the early stages of biotin biosyntheis [] Arginine N-methyltransferase 1, an arginine-methylating enzyme which acts on residues present in a glycine and argine-rich domain and can methylate histones [] Hexaprenyldihydroxybenzoate methyltransferase (2.1.1.114 from EC), a mitochodrial enzyme involved in ubiquinone biosynthesis [] A probable cobalt-precorrin-6Y C(15)-methyltransferase thought to be involved in adenosylcobalamin biosynthesis [] Sterol 24-C-methyltransferase (2.1.1.41 from EC), shown to participate in ergosterol biosynthesis [] 3-demethylubiquinone-9 3-methyltransferase (2.1.1.64 from EC) involved in ubiquinone biosynthesis [] Structural studies show that this domain forms the Rossman-like alpha-beta fold typical of SAM-dependent methyltransferases [, , ]. ; GO: 0008168 methyltransferase activity, 0008152 metabolic process; PDB: 3CGG_B 3CCF_B 3BKW_B 2PXX_A 3I9F_A 2YQZ_B 2YR0_A 3BUS_A 3EGE_A 3G5L_B .... |
| >COG3897 Predicted methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.67 E-value=1.4e-16 Score=120.63 Aligned_cols=130 Identities=22% Similarity=0.381 Sum_probs=102.8
Q ss_pred EEecccCCCCcceeechHHHHHHHHhhccCcccCCeEEEeCCCCcHHHHHHHHhCCCeEEEEeCChHHHHHHHHHhHHhc
Q 026036 45 IREFAFHQLNANFLWPGTFSFAEWLMHHREWIERRRCIELGSGTGALAIFLRKAMNLDITTSDYNDQEIEDNIAYNSTTN 124 (244)
Q Consensus 45 ~~~~~~~~~~~~~~w~~~~~l~~~~~~~~~~~~~~~VLdlG~G~G~~~~~~a~~~~~~v~~~D~~~~~l~~~~~~~~~~~ 124 (244)
++.....+.++.+.|.+++.+++|+..++...+|++|||+|+|+|+.+++.++.+...|+++|+.+... .+++.|+..|
T Consensus 47 l~~ig~pPpfwa~~WagG~~lAR~i~~~PetVrgkrVLd~gagsgLvaIAaa~aGA~~v~a~d~~P~~~-~ai~lNa~an 125 (218)
T COG3897 47 LRLIGLPPPFWAFAWAGGQVLARYIDDHPETVRGKRVLDLGAGSGLVAIAAARAGAAEVVAADIDPWLE-QAIRLNAAAN 125 (218)
T ss_pred HHhcCCCchHHHHHHhhhHHHHHHHhcCccccccceeeecccccChHHHHHHHhhhHHHHhcCCChHHH-HHhhcchhhc
Confidence 444445555688999999999999999999999999999999999999999999889999999998765 8999999999
Q ss_pred CCCCCcceEeeecCCCCCCCCCCccEEEEcccccCCcChHHHHHHHHHHHHhcCCCCceEe
Q 026036 125 GITPALPHIKHSWGDAFPIPNPDWDLILASDILLYVKQYSNLIKSLSVLLKSYKPKDSQVG 185 (244)
Q Consensus 125 ~~~~~~~~~~~~~~~~~~~~~~~fD~I~~~~~l~~~~~~~~l~~~l~~~~~~lk~gG~~~~ 185 (244)
+. .+.+...+... .++.||+|+..|++|.+.... +.+. ....|+..|..++
T Consensus 126 gv-----~i~~~~~d~~g-~~~~~Dl~LagDlfy~~~~a~---~l~~-~~~~l~~~g~~vl 176 (218)
T COG3897 126 GV-----SILFTHADLIG-SPPAFDLLLAGDLFYNHTEAD---RLIP-WKDRLAEAGAAVL 176 (218)
T ss_pred cc-----eeEEeeccccC-CCcceeEEEeeceecCchHHH---HHHH-HHHHHHhCCCEEE
Confidence 87 33333334444 567899999999998876655 5555 4444555555444
|
|
| >KOG1270 consensus Methyltransferases [Coenzyme transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.66 E-value=2.6e-16 Score=124.53 Aligned_cols=158 Identities=15% Similarity=0.125 Sum_probs=98.7
Q ss_pred cCCeEEEeCCCCcHHHHHHHHhCCCeEEEEeCChHHHHHHHHHhHHhcCCCC-Ccce-EeeecCCCCCCCCCCccEEEEc
Q 026036 77 ERRRCIELGSGTGALAIFLRKAMNLDITTSDYNDQEIEDNIAYNSTTNGITP-ALPH-IKHSWGDAFPIPNPDWDLILAS 154 (244)
Q Consensus 77 ~~~~VLdlG~G~G~~~~~~a~~~~~~v~~~D~~~~~l~~~~~~~~~~~~~~~-~~~~-~~~~~~~~~~~~~~~fD~I~~~ 154 (244)
.|.+|||+|||+|+++..+|+. +++|+|+|++++|+ +.++.....+.... .+.. +.+...+ .....+.||.|+|+
T Consensus 89 ~g~~ilDvGCGgGLLSepLArl-ga~V~GID~s~~~V-~vA~~h~~~dP~~~~~~~y~l~~~~~~-~E~~~~~fDaVvcs 165 (282)
T KOG1270|consen 89 LGMKILDVGCGGGLLSEPLARL-GAQVTGIDASDDMV-EVANEHKKMDPVLEGAIAYRLEYEDTD-VEGLTGKFDAVVCS 165 (282)
T ss_pred CCceEEEeccCccccchhhHhh-CCeeEeecccHHHH-HHHHHhhhcCchhccccceeeehhhcc-hhhcccccceeeeH
Confidence 3588999999999999999987 79999999999998 77766544332211 1111 1121111 12223469999999
Q ss_pred ccccCCcChHHHHHHHHHHHHhcCCCCceEeecccccC--CCCCCCCCCCe-EEEeeee--ccCccchhhHHHHHhhcCC
Q 026036 155 DILLYVKQYSNLIKSLSVLLKSYKPKDSQVGHLTKNEQ--GEGTEGLPWPA-FLMSWRR--RIGKEDETIFFTSCENAGL 229 (244)
Q Consensus 155 ~~l~~~~~~~~l~~~l~~~~~~lk~gG~~~~~~~~~~~--~~~~~~~~~~~-~~~~~~~--~~~~~~~~~~~~~l~~~Gf 229 (244)
.++ ++..++...+..+.+.|||||++++++..-.- .-...+..+-. -+.+... +-..-+..+...+++..++
T Consensus 166 evl---eHV~dp~~~l~~l~~~lkP~G~lfittinrt~lS~~~~i~~~E~vl~ivp~Gth~~ekfi~p~e~~~~l~~~~~ 242 (282)
T KOG1270|consen 166 EVL---EHVKDPQEFLNCLSALLKPNGRLFITTINRTILSFAGTIFLAEIVLRIVPKGTHTWEKFINPEELTSILNANGA 242 (282)
T ss_pred HHH---HHHhCHHHHHHHHHHHhCCCCceEeeehhhhHHHhhccccHHHHHHHhcCCCCcCHHHcCCHHHHHHHHHhcCc
Confidence 999 33556679999999999999999998332211 00111100000 0011110 0001124666778888999
Q ss_pred eEEEeccEEEE
Q 026036 230 EVKHLGSRVYC 240 (244)
Q Consensus 230 ~v~~~~~~~~~ 240 (244)
.+..+...+|.
T Consensus 243 ~v~~v~G~~y~ 253 (282)
T KOG1270|consen 243 QVNDVVGEVYN 253 (282)
T ss_pred chhhhhccccc
Confidence 99988766654
|
|
| >PRK11873 arsM arsenite S-adenosylmethyltransferase; Reviewed | Back alignment and domain information |
|---|
Probab=99.66 E-value=1.2e-15 Score=126.18 Aligned_cols=154 Identities=13% Similarity=0.121 Sum_probs=100.2
Q ss_pred CcccCCeEEEeCCCCcHHHHHHHHhC--CCeEEEEeCChHHHHHHHHHhHHhcCCCCCcceEeeecCCCCCCCCCCccEE
Q 026036 74 EWIERRRCIELGSGTGALAIFLRKAM--NLDITTSDYNDQEIEDNIAYNSTTNGITPALPHIKHSWGDAFPIPNPDWDLI 151 (244)
Q Consensus 74 ~~~~~~~VLdlG~G~G~~~~~~a~~~--~~~v~~~D~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fD~I 151 (244)
...++.+|||+|||+|..++.+++.. ..+|+++|+++.++ +.++++....+.. ++..+..+. +.+++.+++||+|
T Consensus 74 ~~~~g~~VLDiG~G~G~~~~~~a~~~g~~~~v~gvD~s~~~l-~~A~~~~~~~g~~-~v~~~~~d~-~~l~~~~~~fD~V 150 (272)
T PRK11873 74 ELKPGETVLDLGSGGGFDCFLAARRVGPTGKVIGVDMTPEML-AKARANARKAGYT-NVEFRLGEI-EALPVADNSVDVI 150 (272)
T ss_pred cCCCCCEEEEeCCCCCHHHHHHHHHhCCCCEEEEECCCHHHH-HHHHHHHHHcCCC-CEEEEEcch-hhCCCCCCceeEE
Confidence 34578999999999999888776654 34799999999997 7788877666552 333333333 2345556789999
Q ss_pred EEcccccCCcChHHHHHHHHHHHHhcCCCCceEeecccccCCCCCCCCCCCeEEEeeeeccCccchhhHHHHHhhcCCeE
Q 026036 152 LASDILLYVKQYSNLIKSLSVLLKSYKPKDSQVGHLTKNEQGEGTEGLPWPAFLMSWRRRIGKEDETIFFTSCENAGLEV 231 (244)
Q Consensus 152 ~~~~~l~~~~~~~~l~~~l~~~~~~lk~gG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gf~v 231 (244)
+++.++++. ++..+++++++++|||||++++......................+.... .+..++.++++++||..
T Consensus 151 i~~~v~~~~---~d~~~~l~~~~r~LkpGG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~e~~~~l~~aGf~~ 225 (272)
T PRK11873 151 ISNCVINLS---PDKERVFKEAFRVLKPGGRFAISDVVLRGELPEEIRNDAELYAGCVAGA--LQEEEYLAMLAEAGFVD 225 (272)
T ss_pred EEcCcccCC---CCHHHHHHHHHHHcCCCcEEEEEEeeccCCCCHHHHHhHHHHhccccCC--CCHHHHHHHHHHCCCCc
Confidence 999887433 3445899999999999999988733221111000000000111111111 23578899999999998
Q ss_pred EEec
Q 026036 232 KHLG 235 (244)
Q Consensus 232 ~~~~ 235 (244)
.++.
T Consensus 226 v~i~ 229 (272)
T PRK11873 226 ITIQ 229 (272)
T ss_pred eEEE
Confidence 7664
|
|
| >PRK14103 trans-aconitate 2-methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.66 E-value=4e-15 Score=121.81 Aligned_cols=149 Identities=17% Similarity=0.234 Sum_probs=95.2
Q ss_pred cCcccCCeEEEeCCCCcHHHHHHHHhC-CCeEEEEeCChHHHHHHHHHhHHhcCCCCCcceEeeecCCCCCCCCCCccEE
Q 026036 73 REWIERRRCIELGSGTGALAIFLRKAM-NLDITTSDYNDQEIEDNIAYNSTTNGITPALPHIKHSWGDAFPIPNPDWDLI 151 (244)
Q Consensus 73 ~~~~~~~~VLdlG~G~G~~~~~~a~~~-~~~v~~~D~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fD~I 151 (244)
....++.+|||||||+|.++..++... +.+|+|+|+|+.|+ +.++++ ++ ..+..+..+ +. ..++||+|
T Consensus 25 l~~~~~~~vLDlGcG~G~~~~~l~~~~p~~~v~gvD~s~~~~-~~a~~~----~~----~~~~~d~~~-~~-~~~~fD~v 93 (255)
T PRK14103 25 VGAERARRVVDLGCGPGNLTRYLARRWPGAVIEALDSSPEMV-AAARER----GV----DARTGDVRD-WK-PKPDTDVV 93 (255)
T ss_pred CCCCCCCEEEEEcCCCCHHHHHHHHHCCCCEEEEEECCHHHH-HHHHhc----CC----cEEEcChhh-CC-CCCCceEE
Confidence 444577899999999999999998875 67899999999987 555432 22 233333222 21 34689999
Q ss_pred EEcccccCCcChHHHHHHHHHHHHhcCCCCceEeecccccCCC-C----CCC--CCCCeE--EEeeeeccCccchhhHHH
Q 026036 152 LASDILLYVKQYSNLIKSLSVLLKSYKPKDSQVGHLTKNEQGE-G----TEG--LPWPAF--LMSWRRRIGKEDETIFFT 222 (244)
Q Consensus 152 ~~~~~l~~~~~~~~l~~~l~~~~~~lk~gG~~~~~~~~~~~~~-~----~~~--~~~~~~--~~~~~~~~~~~~~~~~~~ 222 (244)
+++.+++ +. ++..+.++++++.|||||++++.+....... . ... ..+... ...++......+...+.+
T Consensus 94 ~~~~~l~-~~--~d~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~ 170 (255)
T PRK14103 94 VSNAALQ-WV--PEHADLLVRWVDELAPGSWIAVQVPGNFDAPSHAAVRALARREPWAKLLRDIPFRVGAVVQTPAGYAE 170 (255)
T ss_pred EEehhhh-hC--CCHHHHHHHHHHhCCCCcEEEEEcCCCcCChhHHHHHHHhccCchhHHhcccccccCcCCCCHHHHHH
Confidence 9999984 42 3445899999999999999988754321110 0 000 000000 001111111124688999
Q ss_pred HHhhcCCeEEEec
Q 026036 223 SCENAGLEVKHLG 235 (244)
Q Consensus 223 ~l~~~Gf~v~~~~ 235 (244)
+++++||++....
T Consensus 171 ~l~~aGf~v~~~~ 183 (255)
T PRK14103 171 LLTDAGCKVDAWE 183 (255)
T ss_pred HHHhCCCeEEEEe
Confidence 9999999876544
|
|
| >PF13489 Methyltransf_23: Methyltransferase domain; PDB: 3JWJ_A 3JWH_B 2AOV_B 2AOT_A 1JQD_B 2AOX_A 1JQE_A 2AOU_B 2AOW_A 3DLI_C | Back alignment and domain information |
|---|
Probab=99.66 E-value=7.7e-17 Score=122.50 Aligned_cols=137 Identities=20% Similarity=0.252 Sum_probs=91.3
Q ss_pred cccCCeEEEeCCCCcHHHHHHHHhCCCeEEEEeCChHHHHHHHHHhHHhcCCCCCcceEeeecCCCCCCCCCCccEEEEc
Q 026036 75 WIERRRCIELGSGTGALAIFLRKAMNLDITTSDYNDQEIEDNIAYNSTTNGITPALPHIKHSWGDAFPIPNPDWDLILAS 154 (244)
Q Consensus 75 ~~~~~~VLdlG~G~G~~~~~~a~~~~~~v~~~D~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fD~I~~~ 154 (244)
..++.+|||+|||+|.++..++.. +.+|+++|+++.++ +. . .. ....... .......++||+|+|+
T Consensus 20 ~~~~~~vLDiGcG~G~~~~~l~~~-~~~~~g~D~~~~~~-~~------~-~~----~~~~~~~-~~~~~~~~~fD~i~~~ 85 (161)
T PF13489_consen 20 LKPGKRVLDIGCGTGSFLRALAKR-GFEVTGVDISPQMI-EK------R-NV----VFDNFDA-QDPPFPDGSFDLIICN 85 (161)
T ss_dssp TTTTSEEEEESSTTSHHHHHHHHT-TSEEEEEESSHHHH-HH------T-TS----EEEEEEC-HTHHCHSSSEEEEEEE
T ss_pred cCCCCEEEEEcCCCCHHHHHHHHh-CCEEEEEECCHHHH-hh------h-hh----hhhhhhh-hhhhccccchhhHhhH
Confidence 457789999999999999999766 66999999999886 33 1 11 1111111 1222345689999999
Q ss_pred ccccCCcChHHHHHHHHHHHHhcCCCCceEeecccccCCC----CCCCCCCCeEEEeeeeccCccchhhHHHHHhhcCCe
Q 026036 155 DILLYVKQYSNLIKSLSVLLKSYKPKDSQVGHLTKNEQGE----GTEGLPWPAFLMSWRRRIGKEDETIFFTSCENAGLE 230 (244)
Q Consensus 155 ~~l~~~~~~~~l~~~l~~~~~~lk~gG~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gf~ 230 (244)
+++++. ++...+++.+.++|||||.+++.++...... .......+ ...+...+ +.+++.++++++||+
T Consensus 86 ~~l~~~---~d~~~~l~~l~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~---~~~~~~~ll~~~G~~ 157 (161)
T PF13489_consen 86 DVLEHL---PDPEEFLKELSRLLKPGGYLVISDPNRDDPSPRSFLKWRYDRP--YGGHVHFF---SPDELRQLLEQAGFE 157 (161)
T ss_dssp SSGGGS---SHHHHHHHHHHHCEEEEEEEEEEEEBTTSHHHHHHHHCCGTCH--HTTTTEEB---BHHHHHHHHHHTTEE
T ss_pred HHHhhc---ccHHHHHHHHHHhcCCCCEEEEEEcCCcchhhhHHHhcCCcCc--cCceeccC---CHHHHHHHHHHCCCE
Confidence 999443 3566999999999999999999866542100 00000000 00111222 358999999999999
Q ss_pred EEE
Q 026036 231 VKH 233 (244)
Q Consensus 231 v~~ 233 (244)
+++
T Consensus 158 iv~ 160 (161)
T PF13489_consen 158 IVE 160 (161)
T ss_dssp EEE
T ss_pred EEE
Confidence 875
|
... |
| >PRK14968 putative methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.66 E-value=7.9e-15 Score=114.45 Aligned_cols=150 Identities=19% Similarity=0.223 Sum_probs=106.5
Q ss_pred eechHHHHHHHHhhccCcccCCeEEEeCCCCcHHHHHHHHhCCCeEEEEeCChHHHHHHHHHhHHhcCCCCC-cceEeee
Q 026036 58 LWPGTFSFAEWLMHHREWIERRRCIELGSGTGALAIFLRKAMNLDITTSDYNDQEIEDNIAYNSTTNGITPA-LPHIKHS 136 (244)
Q Consensus 58 ~w~~~~~l~~~~~~~~~~~~~~~VLdlG~G~G~~~~~~a~~~~~~v~~~D~~~~~l~~~~~~~~~~~~~~~~-~~~~~~~ 136 (244)
.++.+..+.+++.. .++.+|||+|||+|..+..++.. +.+|+++|++++++ +.++++...++...+ +..+..+
T Consensus 8 p~~~~~~l~~~~~~----~~~~~vLd~G~G~G~~~~~l~~~-~~~v~~~D~s~~~~-~~a~~~~~~~~~~~~~~~~~~~d 81 (188)
T PRK14968 8 PAEDSFLLAENAVD----KKGDRVLEVGTGSGIVAIVAAKN-GKKVVGVDINPYAV-ECAKCNAKLNNIRNNGVEVIRSD 81 (188)
T ss_pred cchhHHHHHHhhhc----cCCCEEEEEccccCHHHHHHHhh-cceEEEEECCHHHH-HHHHHHHHHcCCCCcceEEEecc
Confidence 45567777777643 46789999999999999999887 78999999999987 788888877766332 3344444
Q ss_pred cCCCCCCCCCCccEEEEcccccCCc------------------ChHHHHHHHHHHHHhcCCCCceEeecccccCCCCCCC
Q 026036 137 WGDAFPIPNPDWDLILASDILLYVK------------------QYSNLIKSLSVLLKSYKPKDSQVGHLTKNEQGEGTEG 198 (244)
Q Consensus 137 ~~~~~~~~~~~fD~I~~~~~l~~~~------------------~~~~l~~~l~~~~~~lk~gG~~~~~~~~~~~~~~~~~ 198 (244)
+.+. ....+||+|+++.+++... ....+...++++.+.|||||.+++..+..
T Consensus 82 ~~~~--~~~~~~d~vi~n~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~Lk~gG~~~~~~~~~-------- 151 (188)
T PRK14968 82 LFEP--FRGDKFDVILFNPPYLPTEEEEEWDDWLNYALSGGKDGREVIDRFLDEVGRYLKPGGRILLLQSSL-------- 151 (188)
T ss_pred cccc--ccccCceEEEECCCcCCCCchhhhhhhhhhhhccCcChHHHHHHHHHHHHHhcCCCeEEEEEEccc--------
Confidence 4332 2234799999988763311 02234578899999999999877652111
Q ss_pred CCCCeEEEeeeeccCccchhhHHHHHhhcCCeEEEeccEEE
Q 026036 199 LPWPAFLMSWRRRIGKEDETIFFTSCENAGLEVKHLGSRVY 239 (244)
Q Consensus 199 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gf~v~~~~~~~~ 239 (244)
. ..+.+.+++++.||++..+....+
T Consensus 152 -------------~---~~~~l~~~~~~~g~~~~~~~~~~~ 176 (188)
T PRK14968 152 -------------T---GEDEVLEYLEKLGFEAEVVAEEKF 176 (188)
T ss_pred -------------C---CHHHHHHHHHHCCCeeeeeeeccc
Confidence 1 135778899999999887765443
|
|
| >PRK00517 prmA ribosomal protein L11 methyltransferase; Reviewed | Back alignment and domain information |
|---|
Probab=99.66 E-value=1.1e-14 Score=118.78 Aligned_cols=138 Identities=21% Similarity=0.246 Sum_probs=99.8
Q ss_pred eechHHHHHHHHhhccCcccCCeEEEeCCCCcHHHHHHHHhCCCeEEEEeCChHHHHHHHHHhHHhcCCCCCcceEeeec
Q 026036 58 LWPGTFSFAEWLMHHREWIERRRCIELGSGTGALAIFLRKAMNLDITTSDYNDQEIEDNIAYNSTTNGITPALPHIKHSW 137 (244)
Q Consensus 58 ~w~~~~~l~~~~~~~~~~~~~~~VLdlG~G~G~~~~~~a~~~~~~v~~~D~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~ 137 (244)
..+.+..+.+.+... ..++.+|||+|||+|.+++.+++.+..+|+++|+++.++ +.+++|...+++... +.+..
T Consensus 102 ~h~tt~~~l~~l~~~--~~~~~~VLDiGcGsG~l~i~~~~~g~~~v~giDis~~~l-~~A~~n~~~~~~~~~---~~~~~ 175 (250)
T PRK00517 102 THPTTRLCLEALEKL--VLPGKTVLDVGCGSGILAIAAAKLGAKKVLAVDIDPQAV-EAARENAELNGVELN---VYLPQ 175 (250)
T ss_pred CCHHHHHHHHHHHhh--cCCCCEEEEeCCcHHHHHHHHHHcCCCeEEEEECCHHHH-HHHHHHHHHcCCCce---EEEcc
Confidence 355566666666543 247889999999999999988776666799999999987 888889888876321 22211
Q ss_pred CCCCCCCCCCccEEEEcccccCCcChHHHHHHHHHHHHhcCCCCceEeecccccCCCCCCCCCCCeEEEeeeeccCccch
Q 026036 138 GDAFPIPNPDWDLILASDILLYVKQYSNLIKSLSVLLKSYKPKDSQVGHLTKNEQGEGTEGLPWPAFLMSWRRRIGKEDE 217 (244)
Q Consensus 138 ~~~~~~~~~~fD~I~~~~~l~~~~~~~~l~~~l~~~~~~lk~gG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 217 (244)
+ +.+||+|+++-. ...+...++++.+.|||||+++++... ....
T Consensus 176 ~------~~~fD~Vvani~------~~~~~~l~~~~~~~LkpgG~lilsgi~------------------------~~~~ 219 (250)
T PRK00517 176 G------DLKADVIVANIL------ANPLLELAPDLARLLKPGGRLILSGIL------------------------EEQA 219 (250)
T ss_pred C------CCCcCEEEEcCc------HHHHHHHHHHHHHhcCCCcEEEEEECc------------------------HhhH
Confidence 1 127999998633 234557889999999999998876110 0124
Q ss_pred hhHHHHHhhcCCeEEEeccE
Q 026036 218 TIFFTSCENAGLEVKHLGSR 237 (244)
Q Consensus 218 ~~~~~~l~~~Gf~v~~~~~~ 237 (244)
..+.+.+++.||++..+.++
T Consensus 220 ~~v~~~l~~~Gf~~~~~~~~ 239 (250)
T PRK00517 220 DEVLEAYEEAGFTLDEVLER 239 (250)
T ss_pred HHHHHHHHHCCCEEEEEEEe
Confidence 67888999999998877654
|
|
| >TIGR00477 tehB tellurite resistance protein TehB | Back alignment and domain information |
|---|
Probab=99.66 E-value=1.9e-15 Score=118.73 Aligned_cols=105 Identities=17% Similarity=0.270 Sum_probs=78.5
Q ss_pred cccCCeEEEeCCCCcHHHHHHHHhCCCeEEEEeCChHHHHHHHHHhHHhcCCCCCcceEeeecCCCCCCCCCCccEEEEc
Q 026036 75 WIERRRCIELGSGTGALAIFLRKAMNLDITTSDYNDQEIEDNIAYNSTTNGITPALPHIKHSWGDAFPIPNPDWDLILAS 154 (244)
Q Consensus 75 ~~~~~~VLdlG~G~G~~~~~~a~~~~~~v~~~D~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fD~I~~~ 154 (244)
..++.+|||+|||+|..++.+++. +.+|+++|+|+.++ +.++++...++++ +.....+.. ..+. .++||+|+++
T Consensus 28 ~~~~~~vLDiGcG~G~~a~~la~~-g~~V~~iD~s~~~l-~~a~~~~~~~~~~--v~~~~~d~~-~~~~-~~~fD~I~~~ 101 (195)
T TIGR00477 28 TVAPCKTLDLGCGQGRNSLYLSLA-GYDVRAWDHNPASI-ASVLDMKARENLP--LRTDAYDIN-AAAL-NEDYDFIFST 101 (195)
T ss_pred cCCCCcEEEeCCCCCHHHHHHHHC-CCeEEEEECCHHHH-HHHHHHHHHhCCC--ceeEeccch-hccc-cCCCCEEEEe
Confidence 335679999999999999999876 67999999999987 7777776666652 222222221 1122 3579999999
Q ss_pred ccccCCcChHHHHHHHHHHHHhcCCCCceEee
Q 026036 155 DILLYVKQYSNLIKSLSVLLKSYKPKDSQVGH 186 (244)
Q Consensus 155 ~~l~~~~~~~~l~~~l~~~~~~lk~gG~~~~~ 186 (244)
.++ ++...+.....++++.+.|||||.+++.
T Consensus 102 ~~~-~~~~~~~~~~~l~~~~~~LkpgG~lli~ 132 (195)
T TIGR00477 102 VVF-MFLQAGRVPEIIANMQAHTRPGGYNLIV 132 (195)
T ss_pred ccc-ccCCHHHHHHHHHHHHHHhCCCcEEEEE
Confidence 987 5455566779999999999999996665
|
Part of a tellurite-reducing operon tehA and tehB |
| >smart00828 PKS_MT Methyltransferase in polyketide synthase (PKS) enzymes | Back alignment and domain information |
|---|
Probab=99.65 E-value=5.1e-15 Score=118.90 Aligned_cols=143 Identities=11% Similarity=0.073 Sum_probs=100.3
Q ss_pred CeEEEeCCCCcHHHHHHHHhC-CCeEEEEeCChHHHHHHHHHhHHhcCCCCCcceEeeecCCCCCCCCCCccEEEEcccc
Q 026036 79 RRCIELGSGTGALAIFLRKAM-NLDITTSDYNDQEIEDNIAYNSTTNGITPALPHIKHSWGDAFPIPNPDWDLILASDIL 157 (244)
Q Consensus 79 ~~VLdlG~G~G~~~~~~a~~~-~~~v~~~D~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fD~I~~~~~l 157 (244)
++|||+|||+|..+..+++.. +.+|+++|+|++++ +.++.+....++..++..+..+..+. +. .++||+|++..++
T Consensus 1 ~~vLDiGcG~G~~~~~la~~~~~~~v~gid~s~~~~-~~a~~~~~~~gl~~~i~~~~~d~~~~-~~-~~~fD~I~~~~~l 77 (224)
T smart00828 1 KRVLDFGCGYGSDLIDLAERHPHLQLHGYTISPEQA-EVGRERIRALGLQGRIRIFYRDSAKD-PF-PDTYDLVFGFEVI 77 (224)
T ss_pred CeEEEECCCCCHHHHHHHHHCCCCEEEEEECCHHHH-HHHHHHHHhcCCCcceEEEecccccC-CC-CCCCCEeehHHHH
Confidence 479999999999999998876 57899999999987 78888777766655555554444322 22 3579999999998
Q ss_pred cCCcChHHHHHHHHHHHHhcCCCCceEeecccccCCCCCCCCCCCeEEEeeeeccCccchhhHHHHHhhcCCeEEEecc
Q 026036 158 LYVKQYSNLIKSLSVLLKSYKPKDSQVGHLTKNEQGEGTEGLPWPAFLMSWRRRIGKEDETIFFTSCENAGLEVKHLGS 236 (244)
Q Consensus 158 ~~~~~~~~l~~~l~~~~~~lk~gG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gf~v~~~~~ 236 (244)
++. ++....++++.+.|||||++++......... .. . ......+ ..+..++.+.++++||++.+..+
T Consensus 78 ~~~---~~~~~~l~~~~~~LkpgG~l~i~~~~~~~~~-~~---~----~~~~~~~-~~s~~~~~~~l~~~Gf~~~~~~~ 144 (224)
T smart00828 78 HHI---KDKMDLFSNISRHLKDGGHLVLADFIANLLS-AI---E----HEETTSY-LVTREEWAELLARNNLRVVEGVD 144 (224)
T ss_pred HhC---CCHHHHHHHHHHHcCCCCEEEEEEcccccCc-cc---c----ccccccc-cCCHHHHHHHHHHCCCeEEEeEE
Confidence 443 3355999999999999999988744321100 00 0 0011111 12357888999999999987653
|
|
| >PRK11705 cyclopropane fatty acyl phospholipid synthase; Provisional | Back alignment and domain information |
|---|
Probab=99.65 E-value=6.2e-15 Score=126.85 Aligned_cols=156 Identities=11% Similarity=0.151 Sum_probs=101.1
Q ss_pred HHHhhccCcccCCeEEEeCCCCcHHHHHHHHhCCCeEEEEeCChHHHHHHHHHhHHhcCCCCCcceEeeecCCCCCCCCC
Q 026036 67 EWLMHHREWIERRRCIELGSGTGALAIFLRKAMNLDITTSDYNDQEIEDNIAYNSTTNGITPALPHIKHSWGDAFPIPNP 146 (244)
Q Consensus 67 ~~~~~~~~~~~~~~VLdlG~G~G~~~~~~a~~~~~~v~~~D~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 146 (244)
+.+.+.....++.+|||||||+|.++..+++..+.+|+++|+|++++ +.++++.. +. . +.+...+.... ++
T Consensus 157 ~~l~~~l~l~~g~rVLDIGcG~G~~a~~la~~~g~~V~giDlS~~~l-~~A~~~~~--~l--~---v~~~~~D~~~l-~~ 227 (383)
T PRK11705 157 DLICRKLQLKPGMRVLDIGCGWGGLARYAAEHYGVSVVGVTISAEQQ-KLAQERCA--GL--P---VEIRLQDYRDL-NG 227 (383)
T ss_pred HHHHHHhCCCCCCEEEEeCCCccHHHHHHHHHCCCEEEEEeCCHHHH-HHHHHHhc--cC--e---EEEEECchhhc-CC
Confidence 44555556678899999999999999999887788999999999987 77776653 22 1 22222222222 46
Q ss_pred CccEEEEcccccCCcChHHHHHHHHHHHHhcCCCCceEeecccccCCCCCCCCCCCeEEEeeeeccCccchhhHHHHHhh
Q 026036 147 DWDLILASDILLYVKQYSNLIKSLSVLLKSYKPKDSQVGHLTKNEQGEGTEGLPWPAFLMSWRRRIGKEDETIFFTSCEN 226 (244)
Q Consensus 147 ~fD~I~~~~~l~~~~~~~~l~~~l~~~~~~lk~gG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 226 (244)
+||.|++..++ ++....+....++++.++|||||++++..................++++ ....+ +...+.+.++
T Consensus 228 ~fD~Ivs~~~~-ehvg~~~~~~~l~~i~r~LkpGG~lvl~~i~~~~~~~~~~~~i~~yifp-~g~lp--s~~~i~~~~~- 302 (383)
T PRK11705 228 QFDRIVSVGMF-EHVGPKNYRTYFEVVRRCLKPDGLFLLHTIGSNKTDTNVDPWINKYIFP-NGCLP--SVRQIAQASE- 302 (383)
T ss_pred CCCEEEEeCch-hhCChHHHHHHHHHHHHHcCCCcEEEEEEccCCCCCCCCCCCceeeecC-CCcCC--CHHHHHHHHH-
Confidence 89999999888 5544556678999999999999999887543322111000000011111 11222 2455555555
Q ss_pred cCCeEEEecc
Q 026036 227 AGLEVKHLGS 236 (244)
Q Consensus 227 ~Gf~v~~~~~ 236 (244)
.||+++++..
T Consensus 303 ~~~~v~d~~~ 312 (383)
T PRK11705 303 GLFVMEDWHN 312 (383)
T ss_pred CCcEEEEEec
Confidence 5899888753
|
|
| >TIGR00406 prmA ribosomal protein L11 methyltransferase | Back alignment and domain information |
|---|
Probab=99.65 E-value=6.8e-15 Score=122.35 Aligned_cols=143 Identities=17% Similarity=0.164 Sum_probs=100.5
Q ss_pred eechHHHHHHHHhhccCcccCCeEEEeCCCCcHHHHHHHHhCCCeEEEEeCChHHHHHHHHHhHHhcCCCCCcceEeeec
Q 026036 58 LWPGTFSFAEWLMHHREWIERRRCIELGSGTGALAIFLRKAMNLDITTSDYNDQEIEDNIAYNSTTNGITPALPHIKHSW 137 (244)
Q Consensus 58 ~w~~~~~l~~~~~~~~~~~~~~~VLdlG~G~G~~~~~~a~~~~~~v~~~D~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~ 137 (244)
..|.+....+++.... .++.+|||+|||+|.+++.+++.+..+|+++|+++.++ +.+++|...|++...+... .
T Consensus 142 ~h~tt~l~l~~l~~~~--~~g~~VLDvGcGsG~lai~aa~~g~~~V~avDid~~al-~~a~~n~~~n~~~~~~~~~---~ 215 (288)
T TIGR00406 142 THPTTSLCLEWLEDLD--LKDKNVIDVGCGSGILSIAALKLGAAKVVGIDIDPLAV-ESARKNAELNQVSDRLQVK---L 215 (288)
T ss_pred CCHHHHHHHHHHHhhc--CCCCEEEEeCCChhHHHHHHHHcCCCeEEEEECCHHHH-HHHHHHHHHcCCCcceEEE---e
Confidence 3355555455554432 36789999999999999998877667899999999997 8899999988875433322 2
Q ss_pred CCCCCCCCCCccEEEEcccccCCcChHHHHHHHHHHHHhcCCCCceEeecccccCCCCCCCCCCCeEEEeeeeccCccch
Q 026036 138 GDAFPIPNPDWDLILASDILLYVKQYSNLIKSLSVLLKSYKPKDSQVGHLTKNEQGEGTEGLPWPAFLMSWRRRIGKEDE 217 (244)
Q Consensus 138 ~~~~~~~~~~fD~I~~~~~l~~~~~~~~l~~~l~~~~~~lk~gG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 217 (244)
.+......++||+|+++.. ...+...+.++.+.|||||.++++-.. ....
T Consensus 216 ~~~~~~~~~~fDlVvan~~------~~~l~~ll~~~~~~LkpgG~li~sgi~------------------------~~~~ 265 (288)
T TIGR00406 216 IYLEQPIEGKADVIVANIL------AEVIKELYPQFSRLVKPGGWLILSGIL------------------------ETQA 265 (288)
T ss_pred cccccccCCCceEEEEecC------HHHHHHHHHHHHHHcCCCcEEEEEeCc------------------------HhHH
Confidence 2222334568999999643 234568889999999999988875110 1123
Q ss_pred hhHHHHHhhcCCeEEEeccE
Q 026036 218 TIFFTSCENAGLEVKHLGSR 237 (244)
Q Consensus 218 ~~~~~~l~~~Gf~v~~~~~~ 237 (244)
..+.+.+++. |++..+.++
T Consensus 266 ~~v~~~~~~~-f~~~~~~~~ 284 (288)
T TIGR00406 266 QSVCDAYEQG-FTVVEIRQR 284 (288)
T ss_pred HHHHHHHHcc-CceeeEecc
Confidence 5677777776 888776554
|
Ribosomal protein L11 methyltransferase is an S-adenosyl-L-methionine-dependent methyltransferase required for the modification of ribosomal protein L11. This protein is found in bacteria and (with a probable transit peptide) in Arabidopsis. |
| >TIGR03533 L3_gln_methyl protein-(glutamine-N5) methyltransferase, ribosomal protein L3-specific | Back alignment and domain information |
|---|
Probab=99.65 E-value=1.3e-15 Score=126.18 Aligned_cols=181 Identities=15% Similarity=0.119 Sum_probs=114.2
Q ss_pred CcccCCCCCCccCCCCCCCcccccccccceeeeec-ccCCceEEEEecccCCC------CcceeechHHHHHHHHhh-cc
Q 026036 2 DVALFSPSSLFAEEDDVTVDEETMETCNGYVERPH-QFPEMELVIREFAFHQL------NANFLWPGTFSFAEWLMH-HR 73 (244)
Q Consensus 2 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~------~~~~~w~~~~~l~~~~~~-~~ 73 (244)
+++++++..++...+...+. +....+..+++|+. ...+..+.+....+++. +.....|.+..+...... ..
T Consensus 39 ~~l~~~~~~~~~~~~~~~~~-~~~~~~~~~~~rr~~~~~Pl~yi~g~~~f~g~~f~v~~~vlipr~~te~lv~~~l~~~~ 117 (284)
T TIGR03533 39 HALHLPLDILEPFLDARLTP-SEKERILELIERRIEERIPVAYLTNEAWFAGLEFYVDERVLIPRSPIAELIEDGFAPWL 117 (284)
T ss_pred HHHCcCHHHHhhcccCCCCH-HHHHHHHHHHHHHHhCCCcHHHHcCCCeecCcEEEECCCCccCCCchHHHHHHHHHHHh
Confidence 45667777888776666665 34445555566653 23233443433332221 123334445454444332 22
Q ss_pred CcccCCeEEEeCCCCcHHHHHHHHhC-CCeEEEEeCChHHHHHHHHHhHHhcCCCCCcceEeeecCCCCCCCCCCccEEE
Q 026036 74 EWIERRRCIELGSGTGALAIFLRKAM-NLDITTSDYNDQEIEDNIAYNSTTNGITPALPHIKHSWGDAFPIPNPDWDLIL 152 (244)
Q Consensus 74 ~~~~~~~VLdlG~G~G~~~~~~a~~~-~~~v~~~D~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fD~I~ 152 (244)
...++.+|||+|||+|.+++.++... +.+|+++|+|+.++ +.+++|+..+++..++..+..++.+.+ ..++||+|+
T Consensus 118 ~~~~~~~vLDlG~GsG~i~~~la~~~~~~~v~avDis~~al-~~A~~n~~~~~~~~~i~~~~~D~~~~~--~~~~fD~Iv 194 (284)
T TIGR03533 118 EPEPVKRILDLCTGSGCIAIACAYAFPEAEVDAVDISPDAL-AVAEINIERHGLEDRVTLIQSDLFAAL--PGRKYDLIV 194 (284)
T ss_pred ccCCCCEEEEEeCchhHHHHHHHHHCCCCEEEEEECCHHHH-HHHHHHHHHcCCCCcEEEEECchhhcc--CCCCccEEE
Confidence 22245699999999999999999875 57999999999997 899999988887555555554443332 345799999
Q ss_pred EcccccCCcC----------------------hHHHHHHHHHHHHhcCCCCceEee
Q 026036 153 ASDILLYVKQ----------------------YSNLIKSLSVLLKSYKPKDSQVGH 186 (244)
Q Consensus 153 ~~~~l~~~~~----------------------~~~l~~~l~~~~~~lk~gG~~~~~ 186 (244)
++.+...... .....+.++.+.+.|+|||++++-
T Consensus 195 ~NPPy~~~~~~~~l~~~~~~ep~~al~gg~dGl~~~~~il~~a~~~L~~gG~l~~e 250 (284)
T TIGR03533 195 SNPPYVDAEDMADLPAEYHHEPELALASGEDGLDLVRRILAEAADHLNENGVLVVE 250 (284)
T ss_pred ECCCCCCccchhhCCHhhhcCHHHHhcCCCcHHHHHHHHHHHHHHhcCCCCEEEEE
Confidence 9876421110 012346788889999999987764
|
Members of this protein family methylate ribosomal protein L3 on a glutamine side chain. This family is related to HemK, a protein-glutamine methyltranferase for peptide chain release factors. |
| >TIGR02752 MenG_heptapren 2-heptaprenyl-1,4-naphthoquinone methyltransferase | Back alignment and domain information |
|---|
Probab=99.65 E-value=1.9e-15 Score=121.94 Aligned_cols=111 Identities=14% Similarity=0.168 Sum_probs=82.1
Q ss_pred ccCcccCCeEEEeCCCCcHHHHHHHHhC--CCeEEEEeCChHHHHHHHHHhHHhcCCCCCcceEeeecCCCCCCCCCCcc
Q 026036 72 HREWIERRRCIELGSGTGALAIFLRKAM--NLDITTSDYNDQEIEDNIAYNSTTNGITPALPHIKHSWGDAFPIPNPDWD 149 (244)
Q Consensus 72 ~~~~~~~~~VLdlG~G~G~~~~~~a~~~--~~~v~~~D~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fD 149 (244)
.....++.+|||+|||+|..+..+++.. ..+|+++|+++.++ +.++.+....+. .++..+..+.. ..++.+++||
T Consensus 40 ~l~~~~~~~vLDiGcG~G~~~~~la~~~~~~~~v~gvD~s~~~~-~~a~~~~~~~~~-~~v~~~~~d~~-~~~~~~~~fD 116 (231)
T TIGR02752 40 RMNVQAGTSALDVCCGTADWSIALAEAVGPEGHVIGLDFSENML-SVGRQKVKDAGL-HNVELVHGNAM-ELPFDDNSFD 116 (231)
T ss_pred hcCCCCCCEEEEeCCCcCHHHHHHHHHhCCCCEEEEEECCHHHH-HHHHHHHHhcCC-CceEEEEechh-cCCCCCCCcc
Confidence 3455578899999999999999998764 46899999999987 777777665554 23333333332 2344567899
Q ss_pred EEEEcccccCCcChHHHHHHHHHHHHhcCCCCceEeecc
Q 026036 150 LILASDILLYVKQYSNLIKSLSVLLKSYKPKDSQVGHLT 188 (244)
Q Consensus 150 ~I~~~~~l~~~~~~~~l~~~l~~~~~~lk~gG~~~~~~~ 188 (244)
+|+++.++ ++ .++..+.++++.++|+|||++++...
T Consensus 117 ~V~~~~~l-~~--~~~~~~~l~~~~~~Lk~gG~l~~~~~ 152 (231)
T TIGR02752 117 YVTIGFGL-RN--VPDYMQVLREMYRVVKPGGKVVCLET 152 (231)
T ss_pred EEEEeccc-cc--CCCHHHHHHHHHHHcCcCeEEEEEEC
Confidence 99999887 33 23445899999999999999887643
|
MenG is a generic term for a methyltransferase that catalyzes the last step in menaquinone biosynthesis; the exact enzymatic activity differs for different MenG because the menaquinone differ in their prenoid side chains in different species. Members of this MenG protein family are 2-heptaprenyl-1,4-naphthoquinone methyltransferase, and are found together in operons with the two subunits of the heptaprenyl diphosphate synthase in Bacillus subtilis and related species. |
| >PRK14967 putative methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.65 E-value=1.1e-14 Score=116.78 Aligned_cols=120 Identities=18% Similarity=0.210 Sum_probs=85.9
Q ss_pred hHHHHHHHHhhccCcccCCeEEEeCCCCcHHHHHHHHhCCCeEEEEeCChHHHHHHHHHhHHhcCCCCCcceEeeecCCC
Q 026036 61 GTFSFAEWLMHHREWIERRRCIELGSGTGALAIFLRKAMNLDITTSDYNDQEIEDNIAYNSTTNGITPALPHIKHSWGDA 140 (244)
Q Consensus 61 ~~~~l~~~~~~~~~~~~~~~VLdlG~G~G~~~~~~a~~~~~~v~~~D~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 140 (244)
.+..+++.+... ...++.+|||+|||+|.+++.+++.+..+|+++|+++.++ +.+++|...++. .+..+..++.+.
T Consensus 21 ds~~l~~~l~~~-~~~~~~~vLDlGcG~G~~~~~la~~~~~~v~~vD~s~~~l-~~a~~n~~~~~~--~~~~~~~d~~~~ 96 (223)
T PRK14967 21 DTQLLADALAAE-GLGPGRRVLDLCTGSGALAVAAAAAGAGSVTAVDISRRAV-RSARLNALLAGV--DVDVRRGDWARA 96 (223)
T ss_pred cHHHHHHHHHhc-ccCCCCeEEEecCCHHHHHHHHHHcCCCeEEEEECCHHHH-HHHHHHHHHhCC--eeEEEECchhhh
Confidence 567777776543 3456789999999999999998876545999999999987 788888877665 233333333322
Q ss_pred CCCCCCCccEEEEcccccCCcC------------------hHHHHHHHHHHHHhcCCCCceEee
Q 026036 141 FPIPNPDWDLILASDILLYVKQ------------------YSNLIKSLSVLLKSYKPKDSQVGH 186 (244)
Q Consensus 141 ~~~~~~~fD~I~~~~~l~~~~~------------------~~~l~~~l~~~~~~lk~gG~~~~~ 186 (244)
...++||+|+++.+++.... ...+...++++.+.|||||++++.
T Consensus 97 --~~~~~fD~Vi~npPy~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~a~~~Lk~gG~l~~~ 158 (223)
T PRK14967 97 --VEFRPFDVVVSNPPYVPAPPDAPPSRGPARAWDAGPDGRAVLDRLCDAAPALLAPGGSLLLV 158 (223)
T ss_pred --ccCCCeeEEEECCCCCCCCcccccccChhHhhhCCCcHHHHHHHHHHHHHHhcCCCcEEEEE
Confidence 23468999999876532211 112456788899999999998875
|
|
| >TIGR00536 hemK_fam HemK family putative methylases | Back alignment and domain information |
|---|
Probab=99.65 E-value=1.3e-15 Score=126.47 Aligned_cols=181 Identities=15% Similarity=0.122 Sum_probs=119.0
Q ss_pred CcccCCCCCCccCCCCCCCcccccccccceeeeecccCCceEEEEecccCCC------CcceeechHHHHHHHHhhccC-
Q 026036 2 DVALFSPSSLFAEEDDVTVDEETMETCNGYVERPHQFPEMELVIREFAFHQL------NANFLWPGTFSFAEWLMHHRE- 74 (244)
Q Consensus 2 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~w~~~~~l~~~~~~~~~- 74 (244)
++++.++..++...+...++ +....+..+.+|+....+..+.+....+++. ......|.+..+.+.+.....
T Consensus 33 ~~l~~~~~~~~~~~~~~l~~-~~~~~~~~~~~~r~~~~pl~yi~g~~~f~g~~f~v~~~vliPr~ete~lv~~~l~~~~~ 111 (284)
T TIGR00536 33 HDLGRERDLLLAFLTEELTP-DEKERIFRLVLRRVKGVPVAYLLGSKEFYGLEFFVNEHVLIPRPETEELVEKALASLIS 111 (284)
T ss_pred HHHCcCHHHHhhccCCCCCH-HHHHHHHHHHHHHHcCCCHHHHhCcceEcCeEEEECCCCcCCCCccHHHHHHHHHHhhh
Confidence 34566777787777776666 4445566666665433333333333332221 123456678888887765432
Q ss_pred cccCCeEEEeCCCCcHHHHHHHHhC-CCeEEEEeCChHHHHHHHHHhHHhcCCCCCcceEeeecCCCCCCCCCCccEEEE
Q 026036 75 WIERRRCIELGSGTGALAIFLRKAM-NLDITTSDYNDQEIEDNIAYNSTTNGITPALPHIKHSWGDAFPIPNPDWDLILA 153 (244)
Q Consensus 75 ~~~~~~VLdlG~G~G~~~~~~a~~~-~~~v~~~D~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fD~I~~ 153 (244)
..+..+|||+|||+|.+++.++... ..+|+++|+|+.++ +.+++|+..+++..++..+..++.+.. ...+||+|++
T Consensus 112 ~~~~~~vLDlG~GsG~i~l~la~~~~~~~v~avDis~~al-~~a~~n~~~~~~~~~v~~~~~d~~~~~--~~~~fDlIvs 188 (284)
T TIGR00536 112 QNPILHILDLGTGSGCIALALAYEFPNAEVIAVDISPDAL-AVAEENAEKNQLEHRVEFIQSNLFEPL--AGQKIDIIVS 188 (284)
T ss_pred cCCCCEEEEEeccHhHHHHHHHHHCCCCEEEEEECCHHHH-HHHHHHHHHcCCCCcEEEEECchhccC--cCCCccEEEE
Confidence 1223699999999999999999876 47999999999987 899999988877544555555554432 2337999999
Q ss_pred cccccCC------------cC----------hHHHHHHHHHHHHhcCCCCceEee
Q 026036 154 SDILLYV------------KQ----------YSNLIKSLSVLLKSYKPKDSQVGH 186 (244)
Q Consensus 154 ~~~l~~~------------~~----------~~~l~~~l~~~~~~lk~gG~~~~~ 186 (244)
+++.... +. .....+.++.+.+.|+|||.+++.
T Consensus 189 NPPyi~~~~~~~~~~~~~~eP~~AL~gg~dgl~~~~~ii~~a~~~L~~gG~l~~e 243 (284)
T TIGR00536 189 NPPYIDEEDLADLPNVVRFEPLLALVGGDDGLNILRQIIELAPDYLKPNGFLVCE 243 (284)
T ss_pred CCCCCCcchhhcCCcccccCcHHHhcCCCcHHHHHHHHHHHHHHhccCCCEEEEE
Confidence 8654211 11 113446788888999999987664
|
The gene hemK from E. coli was found to contribute to heme biosynthesis and originally suggested to be protoporphyrinogen oxidase (Medline 95189105). Functional analysis of the nearest homolog in Saccharomyces cerevisiae, YNL063w, finds it is not protoporphyrinogen oxidase and sequence analysis suggests that HemK homologs have S-adenosyl-methionine-dependent methyltransferase activity (Medline 99237242). Homologs are found, usually in a single copy, in nearly all completed genomes, but varying somewhat in apparent domain architecture. Both E. coli and H. influenzae have two members rather than one. The members from the Mycoplasmas have an additional C-terminal domain. |
| >KOG1540 consensus Ubiquinone biosynthesis methyltransferase COQ5 [Coenzyme transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.64 E-value=8.6e-15 Score=115.29 Aligned_cols=160 Identities=14% Similarity=0.152 Sum_probs=110.0
Q ss_pred cCcccCCeEEEeCCCCcHHHHHHHHhC-------CCeEEEEeCChHHHHHHHHHhHHhcCCCCC--cceEeeecCCCCCC
Q 026036 73 REWIERRRCIELGSGTGALAIFLRKAM-------NLDITTSDYNDQEIEDNIAYNSTTNGITPA--LPHIKHSWGDAFPI 143 (244)
Q Consensus 73 ~~~~~~~~VLdlG~G~G~~~~~~a~~~-------~~~v~~~D~~~~~l~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~ 143 (244)
..+..+.++||++||||-++.-+.+.. ..+|+..|+|++|+ +..++.+...++... +..+ ...++.+|+
T Consensus 96 L~p~~~m~~lDvaGGTGDiaFril~~v~s~~~~~~~~V~v~Dinp~mL-~vgkqRa~~~~l~~~~~~~w~-~~dAE~LpF 173 (296)
T KOG1540|consen 96 LGPGKGMKVLDVAGGTGDIAFRILRHVKSQFGDRESKVTVLDINPHML-AVGKQRAKKRPLKASSRVEWV-EGDAEDLPF 173 (296)
T ss_pred cCCCCCCeEEEecCCcchhHHHHHHhhccccCCCCceEEEEeCCHHHH-HHHHHHHhhcCCCcCCceEEE-eCCcccCCC
Confidence 456688999999999999998776654 26899999999998 666665544444322 1222 223356889
Q ss_pred CCCCccEEEEcccccCCcChHHHHHHHHHHHHhcCCCCceEeecccccCCC-----------------CCCCCC---CCe
Q 026036 144 PNPDWDLILASDILLYVKQYSNLIKSLSVLLKSYKPKDSQVGHLTKNEQGE-----------------GTEGLP---WPA 203 (244)
Q Consensus 144 ~~~~fD~I~~~~~l~~~~~~~~l~~~l~~~~~~lk~gG~~~~~~~~~~~~~-----------------~~~~~~---~~~ 203 (244)
++.+||...++..+.+ .....+.+++++|+|||||+|.+.......+. +..... +-.
T Consensus 174 dd~s~D~yTiafGIRN---~th~~k~l~EAYRVLKpGGrf~cLeFskv~~~~l~~fy~~ysf~VlpvlG~~iagd~~sYq 250 (296)
T KOG1540|consen 174 DDDSFDAYTIAFGIRN---VTHIQKALREAYRVLKPGGRFSCLEFSKVENEPLKWFYDQYSFDVLPVLGEIIAGDRKSYQ 250 (296)
T ss_pred CCCcceeEEEecceec---CCCHHHHHHHHHHhcCCCcEEEEEEccccccHHHHHHHHhhhhhhhchhhHhhhhhHhhhh
Confidence 9999999999988844 44455999999999999999998733222210 000000 011
Q ss_pred EEEeeeeccCccchhhHHHHHhhcCCeEEE-eccEEE
Q 026036 204 FLMSWRRRIGKEDETIFFTSCENAGLEVKH-LGSRVY 239 (244)
Q Consensus 204 ~~~~~~~~~~~~~~~~~~~~l~~~Gf~v~~-~~~~~~ 239 (244)
++...-++++. .++|..+.+++||.... .+...+
T Consensus 251 YLveSI~rfp~--qe~f~~miedaGF~~~~~ye~lt~ 285 (296)
T KOG1540|consen 251 YLVESIRRFPP--QEEFASMIEDAGFSSVNGYENLTF 285 (296)
T ss_pred hHHhhhhcCCC--HHHHHHHHHHcCCcccccccccee
Confidence 44444556655 78999999999999886 544433
|
|
| >PF13847 Methyltransf_31: Methyltransferase domain; PDB: 3T0I_B 3SVZ_B 3SXJ_A 3F4K_A 3GU3_B 2GH1_A 1R8Y_E 1R8X_B 2B3T_A 1T43_A | Back alignment and domain information |
|---|
Probab=99.64 E-value=1.9e-15 Score=114.11 Aligned_cols=106 Identities=22% Similarity=0.382 Sum_probs=83.3
Q ss_pred cCCeEEEeCCCCcHHHHHHHHh-C-CCeEEEEeCChHHHHHHHHHhHHhcCCCCCcceEeeecCCCCC--CCCCCccEEE
Q 026036 77 ERRRCIELGSGTGALAIFLRKA-M-NLDITTSDYNDQEIEDNIAYNSTTNGITPALPHIKHSWGDAFP--IPNPDWDLIL 152 (244)
Q Consensus 77 ~~~~VLdlG~G~G~~~~~~a~~-~-~~~v~~~D~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~fD~I~ 152 (244)
++.+|||+|||+|.++..++.. . +.+++|+|++++++ +.++.+...++.+ ++..+..+..+ ++ +. +.||+|+
T Consensus 3 ~~~~iLDlGcG~G~~~~~l~~~~~~~~~i~gvD~s~~~i-~~a~~~~~~~~~~-ni~~~~~d~~~-l~~~~~-~~~D~I~ 78 (152)
T PF13847_consen 3 SNKKILDLGCGTGRLLIQLAKELNPGAKIIGVDISEEMI-EYAKKRAKELGLD-NIEFIQGDIED-LPQELE-EKFDIII 78 (152)
T ss_dssp TTSEEEEET-TTSHHHHHHHHHSTTTSEEEEEESSHHHH-HHHHHHHHHTTST-TEEEEESBTTC-GCGCSS-TTEEEEE
T ss_pred CCCEEEEecCcCcHHHHHHHHhcCCCCEEEEEECcHHHH-HHhhccccccccc-ccceEEeehhc-cccccC-CCeeEEE
Confidence 5789999999999999999843 3 78999999999998 8888887777774 56666666655 44 33 6899999
Q ss_pred EcccccCCcChHHHHHHHHHHHHhcCCCCceEeeccc
Q 026036 153 ASDILLYVKQYSNLIKSLSVLLKSYKPKDSQVGHLTK 189 (244)
Q Consensus 153 ~~~~l~~~~~~~~l~~~l~~~~~~lk~gG~~~~~~~~ 189 (244)
++.++++ ..+....++++.+.|+++|.+++....
T Consensus 79 ~~~~l~~---~~~~~~~l~~~~~~lk~~G~~i~~~~~ 112 (152)
T PF13847_consen 79 SNGVLHH---FPDPEKVLKNIIRLLKPGGILIISDPN 112 (152)
T ss_dssp EESTGGG---TSHHHHHHHHHHHHEEEEEEEEEEEEE
T ss_pred EcCchhh---ccCHHHHHHHHHHHcCCCcEEEEEECC
Confidence 9999833 334458999999999999998887433
|
... |
| >PRK08287 cobalt-precorrin-6Y C(15)-methyltransferase; Validated | Back alignment and domain information |
|---|
Probab=99.64 E-value=1.5e-14 Score=113.03 Aligned_cols=136 Identities=18% Similarity=0.146 Sum_probs=94.0
Q ss_pred HHHHHHHHhhccCcccCCeEEEeCCCCcHHHHHHHHhC-CCeEEEEeCChHHHHHHHHHhHHhcCCCCCcceEeeecCCC
Q 026036 62 TFSFAEWLMHHREWIERRRCIELGSGTGALAIFLRKAM-NLDITTSDYNDQEIEDNIAYNSTTNGITPALPHIKHSWGDA 140 (244)
Q Consensus 62 ~~~l~~~~~~~~~~~~~~~VLdlG~G~G~~~~~~a~~~-~~~v~~~D~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 140 (244)
...+...+.......++.+|||+|||+|.+++.+++.. ..+|+++|+++.++ +.+++|+..+++. ++ .+..++.
T Consensus 16 ~~~~r~~~~~~l~~~~~~~vLDiG~G~G~~~~~la~~~~~~~v~~vD~s~~~~-~~a~~n~~~~~~~-~i---~~~~~d~ 90 (187)
T PRK08287 16 KEEVRALALSKLELHRAKHLIDVGAGTGSVSIEAALQFPSLQVTAIERNPDAL-RLIKENRQRFGCG-NI---DIIPGEA 90 (187)
T ss_pred hHHHHHHHHHhcCCCCCCEEEEECCcCCHHHHHHHHHCCCCEEEEEECCHHHH-HHHHHHHHHhCCC-Ce---EEEecCc
Confidence 33344444444455578899999999999999998876 57899999999987 7888888776652 22 3333332
Q ss_pred CCCCCCCccEEEEcccccCCcChHHHHHHHHHHHHhcCCCCceEeecccccCCCCCCCCCCCeEEEeeeeccCccchhhH
Q 026036 141 FPIPNPDWDLILASDILLYVKQYSNLIKSLSVLLKSYKPKDSQVGHLTKNEQGEGTEGLPWPAFLMSWRRRIGKEDETIF 220 (244)
Q Consensus 141 ~~~~~~~fD~I~~~~~l~~~~~~~~l~~~l~~~~~~lk~gG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 220 (244)
.....++||+|++.... . .+...++.+.+.|+|||++++.... ..+..++
T Consensus 91 ~~~~~~~~D~v~~~~~~---~---~~~~~l~~~~~~Lk~gG~lv~~~~~------------------------~~~~~~~ 140 (187)
T PRK08287 91 PIELPGKADAIFIGGSG---G---NLTAIIDWSLAHLHPGGRLVLTFIL------------------------LENLHSA 140 (187)
T ss_pred hhhcCcCCCEEEECCCc---c---CHHHHHHHHHHhcCCCeEEEEEEec------------------------HhhHHHH
Confidence 22223579999987553 1 2346788899999999987764100 1224677
Q ss_pred HHHHhhcCCeEE
Q 026036 221 FTSCENAGLEVK 232 (244)
Q Consensus 221 ~~~l~~~Gf~v~ 232 (244)
.+.+++.||+..
T Consensus 141 ~~~l~~~g~~~~ 152 (187)
T PRK08287 141 LAHLEKCGVSEL 152 (187)
T ss_pred HHHHHHCCCCcc
Confidence 889999998643
|
|
| >PLN02490 MPBQ/MSBQ methyltransferase | Back alignment and domain information |
|---|
Probab=99.63 E-value=8.9e-15 Score=123.10 Aligned_cols=155 Identities=11% Similarity=0.053 Sum_probs=100.0
Q ss_pred HHHHHHHhhccCc-ccCCeEEEeCCCCcHHHHHHHHhC-CCeEEEEeCChHHHHHHHHHhHHhcCCCCCcceEeeecCCC
Q 026036 63 FSFAEWLMHHREW-IERRRCIELGSGTGALAIFLRKAM-NLDITTSDYNDQEIEDNIAYNSTTNGITPALPHIKHSWGDA 140 (244)
Q Consensus 63 ~~l~~~~~~~~~~-~~~~~VLdlG~G~G~~~~~~a~~~-~~~v~~~D~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 140 (244)
..+.+.+.+.... .++.+|||||||+|.++..+++.. +.+|+++|++++|+ +.++++....++ ..+..+.. .
T Consensus 98 e~~r~~~l~~~~l~~~~~~VLDLGcGtG~~~l~La~~~~~~~VtgVD~S~~mL-~~A~~k~~~~~i----~~i~gD~e-~ 171 (340)
T PLN02490 98 EDMRDDALEPADLSDRNLKVVDVGGGTGFTTLGIVKHVDAKNVTILDQSPHQL-AKAKQKEPLKEC----KIIEGDAE-D 171 (340)
T ss_pred HHHHHHHHhhcccCCCCCEEEEEecCCcHHHHHHHHHCCCCEEEEEECCHHHH-HHHHHhhhccCC----eEEeccHH-h
Confidence 3344434433322 357799999999999998887764 57899999999987 666665432222 33333332 2
Q ss_pred CCCCCCCccEEEEcccccCCcChHHHHHHHHHHHHhcCCCCceEeecccccCCC-CCCCCCCCeEEEeeeeccCccchhh
Q 026036 141 FPIPNPDWDLILASDILLYVKQYSNLIKSLSVLLKSYKPKDSQVGHLTKNEQGE-GTEGLPWPAFLMSWRRRIGKEDETI 219 (244)
Q Consensus 141 ~~~~~~~fD~I~~~~~l~~~~~~~~l~~~l~~~~~~lk~gG~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~ 219 (244)
+++.+++||+|++++++.+... ..+.++++.+.|||||++++......... .... ... +....+.++
T Consensus 172 lp~~~~sFDvVIs~~~L~~~~d---~~~~L~e~~rvLkPGG~LvIi~~~~p~~~~~r~~--~~~-------~~~~~t~eE 239 (340)
T PLN02490 172 LPFPTDYADRYVSAGSIEYWPD---PQRGIKEAYRVLKIGGKACLIGPVHPTFWLSRFF--ADV-------WMLFPKEEE 239 (340)
T ss_pred CCCCCCceeEEEEcChhhhCCC---HHHHHHHHHHhcCCCcEEEEEEecCcchhHHHHh--hhh-------hccCCCHHH
Confidence 4555678999999999844333 34899999999999999887632211100 0000 000 111123589
Q ss_pred HHHHHhhcCCeEEEec
Q 026036 220 FFTSCENAGLEVKHLG 235 (244)
Q Consensus 220 ~~~~l~~~Gf~v~~~~ 235 (244)
+.++++++||+.+++.
T Consensus 240 l~~lL~~aGF~~V~i~ 255 (340)
T PLN02490 240 YIEWFTKAGFKDVKLK 255 (340)
T ss_pred HHHHHHHCCCeEEEEE
Confidence 9999999999987664
|
|
| >COG2890 HemK Methylase of polypeptide chain release factors [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=99.63 E-value=2.5e-14 Score=118.00 Aligned_cols=192 Identities=18% Similarity=0.233 Sum_probs=120.6
Q ss_pred CCCCCccCCCCCCCcccccccccceeeeecccCCceEEEEecccCCC------CcceeechHHHHHHHHhhccCcccCCe
Q 026036 7 SPSSLFAEEDDVTVDEETMETCNGYVERPHQFPEMELVIREFAFHQL------NANFLWPGTFSFAEWLMHHREWIERRR 80 (244)
Q Consensus 7 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~w~~~~~l~~~~~~~~~~~~~~~ 80 (244)
.+..++...+...+. +..........|.....+..+.+....+++. .-....|.++.|.+.+......... +
T Consensus 36 ~~~~~~~~~~~~~~~-~~~~~~~~~~~rr~~~~P~~yi~g~~~f~gl~~~v~~~vliPr~dTe~Lve~~l~~~~~~~~-~ 113 (280)
T COG2890 36 PRDQLLAHPEAELSE-EELERLRELLERRAEGEPVAYILGSAEFGGLRFKVDEGVLIPRPDTELLVEAALALLLQLDK-R 113 (280)
T ss_pred CHHHHhhccccccCH-HHHHHHHHHHHHHHCCCCHhHhhccCeecceeeeeCCCceecCCchHHHHHHHHHhhhhcCC-c
Confidence 344555555555554 3344444444443332223333332222111 1356777899999987633222122 7
Q ss_pred EEEeCCCCcHHHHHHHHhCC-CeEEEEeCChHHHHHHHHHhHHhcCCCCCcceEeeecCCCCCCCCCCccEEEEcccccC
Q 026036 81 CIELGSGTGALAIFLRKAMN-LDITTSDYNDQEIEDNIAYNSTTNGITPALPHIKHSWGDAFPIPNPDWDLILASDILLY 159 (244)
Q Consensus 81 VLdlG~G~G~~~~~~a~~~~-~~v~~~D~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fD~I~~~~~l~~ 159 (244)
|||||||||.+++.++.... .+|+|+|+|+.++ +.+++|+..+++ .++..+..+|.+.. .++||+|++|++. -
T Consensus 114 ilDlGTGSG~iai~la~~~~~~~V~a~Dis~~Al-~~A~~Na~~~~l-~~~~~~~~dlf~~~---~~~fDlIVsNPPY-i 187 (280)
T COG2890 114 ILDLGTGSGAIAIALAKEGPDAEVIAVDISPDAL-ALARENAERNGL-VRVLVVQSDLFEPL---RGKFDLIVSNPPY-I 187 (280)
T ss_pred EEEecCChHHHHHHHHhhCcCCeEEEEECCHHHH-HHHHHHHHHcCC-ccEEEEeeeccccc---CCceeEEEeCCCC-C
Confidence 99999999999999998874 5999999999998 999999999987 33334433555443 3489999999884 3
Q ss_pred CcC-----------------------hHHHHHHHHHHHHhcCCCCceEeecccccCCCCCCCCCCCeEEEeeeeccCccc
Q 026036 160 VKQ-----------------------YSNLIKSLSVLLKSYKPKDSQVGHLTKNEQGEGTEGLPWPAFLMSWRRRIGKED 216 (244)
Q Consensus 160 ~~~-----------------------~~~l~~~l~~~~~~lk~gG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 216 (244)
... .....+.+..+.+.|+|||.+++- + .. ..
T Consensus 188 p~~~~~~~~~~~~~EP~~Al~~g~dGl~~~~~i~~~a~~~l~~~g~l~le---------------------~--g~--~q 242 (280)
T COG2890 188 PAEDPELLPEVVRYEPLLALVGGGDGLEVYRRILGEAPDILKPGGVLILE---------------------I--GL--TQ 242 (280)
T ss_pred CCcccccChhhhccCHHHHHccCccHHHHHHHHHHhhHHHcCCCcEEEEE---------------------E--CC--Cc
Confidence 332 112346667778899998865553 1 11 11
Q ss_pred hhhHHHHHhhcC-CeE
Q 026036 217 ETIFFTSCENAG-LEV 231 (244)
Q Consensus 217 ~~~~~~~l~~~G-f~v 231 (244)
...+.+++.+.| |..
T Consensus 243 ~~~v~~~~~~~~~~~~ 258 (280)
T COG2890 243 GEAVKALFEDTGFFEI 258 (280)
T ss_pred HHHHHHHHHhcCCceE
Confidence 367888899999 543
|
|
| >PRK10258 biotin biosynthesis protein BioC; Provisional | Back alignment and domain information |
|---|
Probab=99.62 E-value=4.9e-15 Score=121.03 Aligned_cols=153 Identities=12% Similarity=0.110 Sum_probs=96.0
Q ss_pred HHHHHhhccCcccCCeEEEeCCCCcHHHHHHHHhCCCeEEEEeCChHHHHHHHHHhHHhcCCCCCcceEeeecCCCCCCC
Q 026036 65 FAEWLMHHREWIERRRCIELGSGTGALAIFLRKAMNLDITTSDYNDQEIEDNIAYNSTTNGITPALPHIKHSWGDAFPIP 144 (244)
Q Consensus 65 l~~~~~~~~~~~~~~~VLdlG~G~G~~~~~~a~~~~~~v~~~D~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 144 (244)
.++.+.+.....++.+|||+|||+|.++..++.. +.+|+++|+|+.|+ +.++++... ...+..+. +.+++.
T Consensus 30 ~a~~l~~~l~~~~~~~vLDiGcG~G~~~~~l~~~-~~~v~~~D~s~~~l-~~a~~~~~~------~~~~~~d~-~~~~~~ 100 (251)
T PRK10258 30 SADALLAMLPQRKFTHVLDAGCGPGWMSRYWRER-GSQVTALDLSPPML-AQARQKDAA------DHYLAGDI-ESLPLA 100 (251)
T ss_pred HHHHHHHhcCccCCCeEEEeeCCCCHHHHHHHHc-CCeEEEEECCHHHH-HHHHhhCCC------CCEEEcCc-ccCcCC
Confidence 3334444344345679999999999999888765 68999999999987 666554321 12333333 234566
Q ss_pred CCCccEEEEcccccCCcChHHHHHHHHHHHHhcCCCCceEeecccccCCCCCCCCCCCe-EEEeeeeccCccchhhHHHH
Q 026036 145 NPDWDLILASDILLYVKQYSNLIKSLSVLLKSYKPKDSQVGHLTKNEQGEGTEGLPWPA-FLMSWRRRIGKEDETIFFTS 223 (244)
Q Consensus 145 ~~~fD~I~~~~~l~~~~~~~~l~~~l~~~~~~lk~gG~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~ 223 (244)
+++||+|+++.++ ++ .+++..++.++.++|+|||.+++++....... ........ ....+..++. +.+++.++
T Consensus 101 ~~~fD~V~s~~~l-~~--~~d~~~~l~~~~~~Lk~gG~l~~~~~~~~~~~-el~~~~~~~~~~~~~~~~~--~~~~l~~~ 174 (251)
T PRK10258 101 TATFDLAWSNLAV-QW--CGNLSTALRELYRVVRPGGVVAFTTLVQGSLP-ELHQAWQAVDERPHANRFL--PPDAIEQA 174 (251)
T ss_pred CCcEEEEEECchh-hh--cCCHHHHHHHHHHHcCCCeEEEEEeCCCCchH-HHHHHHHHhccCCccccCC--CHHHHHHH
Confidence 6789999999988 43 23455999999999999999998754332111 00000000 0001122222 25778888
Q ss_pred HhhcCCeEE
Q 026036 224 CENAGLEVK 232 (244)
Q Consensus 224 l~~~Gf~v~ 232 (244)
+...|++..
T Consensus 175 l~~~~~~~~ 183 (251)
T PRK10258 175 LNGWRYQHH 183 (251)
T ss_pred HHhCCceee
Confidence 888887643
|
|
| >PRK09489 rsmC 16S ribosomal RNA m2G1207 methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.62 E-value=8.8e-15 Score=123.94 Aligned_cols=104 Identities=13% Similarity=0.190 Sum_probs=80.6
Q ss_pred cCCeEEEeCCCCcHHHHHHHHhC-CCeEEEEeCChHHHHHHHHHhHHhcCCCCCcceEeeecCCCCCCCCCCccEEEEcc
Q 026036 77 ERRRCIELGSGTGALAIFLRKAM-NLDITTSDYNDQEIEDNIAYNSTTNGITPALPHIKHSWGDAFPIPNPDWDLILASD 155 (244)
Q Consensus 77 ~~~~VLdlG~G~G~~~~~~a~~~-~~~v~~~D~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fD~I~~~~ 155 (244)
...+|||+|||+|.++..+++.. ..+|+++|+++.++ +.++.|...|++.. .+.+.+......++||+|+++.
T Consensus 196 ~~g~VLDlGCG~G~ls~~la~~~p~~~v~~vDis~~Al-~~A~~nl~~n~l~~-----~~~~~D~~~~~~~~fDlIvsNP 269 (342)
T PRK09489 196 TKGKVLDVGCGAGVLSAVLARHSPKIRLTLSDVSAAAL-ESSRATLAANGLEG-----EVFASNVFSDIKGRFDMIISNP 269 (342)
T ss_pred CCCeEEEeccCcCHHHHHHHHhCCCCEEEEEECCHHHH-HHHHHHHHHcCCCC-----EEEEcccccccCCCccEEEECC
Confidence 34589999999999999998876 46899999999987 88888988887732 2223343333456899999999
Q ss_pred cccCCc--ChHHHHHHHHHHHHhcCCCCceEee
Q 026036 156 ILLYVK--QYSNLIKSLSVLLKSYKPKDSQVGH 186 (244)
Q Consensus 156 ~l~~~~--~~~~l~~~l~~~~~~lk~gG~~~~~ 186 (244)
+++... ......+.++++.+.|||||.++++
T Consensus 270 PFH~g~~~~~~~~~~~i~~a~~~LkpgG~L~iV 302 (342)
T PRK09489 270 PFHDGIQTSLDAAQTLIRGAVRHLNSGGELRIV 302 (342)
T ss_pred CccCCccccHHHHHHHHHHHHHhcCcCCEEEEE
Confidence 874321 2345668999999999999999886
|
|
| >COG2813 RsmC 16S RNA G1207 methylase RsmC [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=99.62 E-value=1.5e-14 Score=117.72 Aligned_cols=115 Identities=18% Similarity=0.202 Sum_probs=85.1
Q ss_pred HHHhhccCcccCCeEEEeCCCCcHHHHHHHHhC-CCeEEEEeCChHHHHHHHHHhHHhcCCCCCcceEeeecCCCCCCCC
Q 026036 67 EWLMHHREWIERRRCIELGSGTGALAIFLRKAM-NLDITTSDYNDQEIEDNIAYNSTTNGITPALPHIKHSWGDAFPIPN 145 (244)
Q Consensus 67 ~~~~~~~~~~~~~~VLdlG~G~G~~~~~~a~~~-~~~v~~~D~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 145 (244)
+.++++.....+.+|||+|||.|.+++.+++.. ..+++.+|++..++ +.+++|+..|+.+.. ... ..+......
T Consensus 148 ~lLl~~l~~~~~~~vlDlGCG~Gvlg~~la~~~p~~~vtmvDvn~~Av-~~ar~Nl~~N~~~~~-~v~---~s~~~~~v~ 222 (300)
T COG2813 148 RLLLETLPPDLGGKVLDLGCGYGVLGLVLAKKSPQAKLTLVDVNARAV-ESARKNLAANGVENT-EVW---ASNLYEPVE 222 (300)
T ss_pred HHHHHhCCccCCCcEEEeCCCccHHHHHHHHhCCCCeEEEEecCHHHH-HHHHHhHHHcCCCcc-EEE---Eeccccccc
Confidence 344444555555699999999999999999987 57899999999987 999999999988542 111 122222222
Q ss_pred CCccEEEEcccccCCcC--hHHHHHHHHHHHHhcCCCCceEee
Q 026036 146 PDWDLILASDILLYVKQ--YSNLIKSLSVLLKSYKPKDSQVGH 186 (244)
Q Consensus 146 ~~fD~I~~~~~l~~~~~--~~~l~~~l~~~~~~lk~gG~~~~~ 186 (244)
++||+|+||++++.... .....++++...+.|++||.+.++
T Consensus 223 ~kfd~IisNPPfh~G~~v~~~~~~~~i~~A~~~L~~gGeL~iV 265 (300)
T COG2813 223 GKFDLIISNPPFHAGKAVVHSLAQEIIAAAARHLKPGGELWIV 265 (300)
T ss_pred ccccEEEeCCCccCCcchhHHHHHHHHHHHHHhhccCCEEEEE
Confidence 38999999999843221 112238899999999999998887
|
|
| >TIGR00138 gidB 16S rRNA methyltransferase GidB | Back alignment and domain information |
|---|
Probab=99.61 E-value=1.7e-14 Score=111.76 Aligned_cols=99 Identities=20% Similarity=0.247 Sum_probs=74.1
Q ss_pred cCCeEEEeCCCCcHHHHHHHHhC-CCeEEEEeCChHHHHHHHHHhHHhcCCCCCcceEeeecCCCCCCCCCCccEEEEcc
Q 026036 77 ERRRCIELGSGTGALAIFLRKAM-NLDITTSDYNDQEIEDNIAYNSTTNGITPALPHIKHSWGDAFPIPNPDWDLILASD 155 (244)
Q Consensus 77 ~~~~VLdlG~G~G~~~~~~a~~~-~~~v~~~D~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fD~I~~~~ 155 (244)
++.+|||+|||+|.+++.++... ..+|+++|.++.++ +.+++++..++.+ ++..+..+..+. . ..++||+|+++.
T Consensus 42 ~~~~vLDiGcGtG~~s~~la~~~~~~~V~~iD~s~~~~-~~a~~~~~~~~~~-~i~~i~~d~~~~-~-~~~~fD~I~s~~ 117 (181)
T TIGR00138 42 DGKKVIDIGSGAGFPGIPLAIARPELKLTLLESNHKKV-AFLREVKAELGLN-NVEIVNGRAEDF-Q-HEEQFDVITSRA 117 (181)
T ss_pred CCCeEEEecCCCCccHHHHHHHCCCCeEEEEeCcHHHH-HHHHHHHHHhCCC-CeEEEecchhhc-c-ccCCccEEEehh
Confidence 57899999999999999988765 57899999999987 7888887777663 344554444332 1 246899999865
Q ss_pred cccCCcChHHHHHHHHHHHHhcCCCCceEee
Q 026036 156 ILLYVKQYSNLIKSLSVLLKSYKPKDSQVGH 186 (244)
Q Consensus 156 ~l~~~~~~~~l~~~l~~~~~~lk~gG~~~~~ 186 (244)
+ . .+...++.+.+.|+|||++++.
T Consensus 118 -~-~-----~~~~~~~~~~~~LkpgG~lvi~ 141 (181)
T TIGR00138 118 -L-A-----SLNVLLELTLNLLKVGGYFLAY 141 (181)
T ss_pred -h-h-----CHHHHHHHHHHhcCCCCEEEEE
Confidence 3 1 2336777889999999987764
|
GidB (glucose-inhibited division protein B) appears to be present and in a single copy in nearly all complete eubacterial genomes. It is missing only from some obligate intracellular species of various lineages (Chlamydiae, Ehrlichia, Wolbachia, Anaplasma, Buchnera, etc.). GidB shows a methytransferase fold in its the crystal structure, and acts as a 7-methylguanosine (m(7)G) methyltransferase, apparently specific to 16S rRNA. |
| >TIGR02021 BchM-ChlM magnesium protoporphyrin O-methyltransferase | Back alignment and domain information |
|---|
Probab=99.61 E-value=7.6e-15 Score=117.49 Aligned_cols=152 Identities=15% Similarity=0.111 Sum_probs=96.7
Q ss_pred cccCCeEEEeCCCCcHHHHHHHHhCCCeEEEEeCChHHHHHHHHHhHHhcCCCCCcceEeeecCCCCCCCCCCccEEEEc
Q 026036 75 WIERRRCIELGSGTGALAIFLRKAMNLDITTSDYNDQEIEDNIAYNSTTNGITPALPHIKHSWGDAFPIPNPDWDLILAS 154 (244)
Q Consensus 75 ~~~~~~VLdlG~G~G~~~~~~a~~~~~~v~~~D~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fD~I~~~ 154 (244)
..++.+|||+|||+|.++..++.. +.+|+|+|++++++ +.++++...+....++.....+.. ... ++||+|++.
T Consensus 53 ~~~~~~vLDiGcG~G~~~~~la~~-~~~v~gvD~s~~~i-~~a~~~~~~~~~~~~i~~~~~d~~---~~~-~~fD~ii~~ 126 (219)
T TIGR02021 53 PLKGKRVLDAGCGTGLLSIELAKR-GAIVKAVDISEQMV-QMARNRAQGRDVAGNVEFEVNDLL---SLC-GEFDIVVCM 126 (219)
T ss_pred CCCCCEEEEEeCCCCHHHHHHHHC-CCEEEEEECCHHHH-HHHHHHHHhcCCCCceEEEECChh---hCC-CCcCEEEEh
Confidence 456789999999999999999875 67999999999997 777777665544333333332322 222 689999999
Q ss_pred ccccCCcChHHHHHHHHHHHHhcCCCCceEeecccccCC----CCCCCCCCCeEEEeeeeccCccchhhHHHHHhhcCCe
Q 026036 155 DILLYVKQYSNLIKSLSVLLKSYKPKDSQVGHLTKNEQG----EGTEGLPWPAFLMSWRRRIGKEDETIFFTSCENAGLE 230 (244)
Q Consensus 155 ~~l~~~~~~~~l~~~l~~~~~~lk~gG~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gf~ 230 (244)
+++++ ...+.+..+++++.+.+++++.+.+........ ....+.... ....... .+..++.++++++||+
T Consensus 127 ~~l~~-~~~~~~~~~l~~i~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~--~~~~~~~~~l~~~Gf~ 200 (219)
T TIGR02021 127 DVLIH-YPASDMAKALGHLASLTKERVIFTFAPKTAWLAFLKMIGELFPGSS---RATSAYL--HPMTDLERALGELGWK 200 (219)
T ss_pred hHHHh-CCHHHHHHHHHHHHHHhCCCEEEEECCCchHHHHHHHHHhhCcCcc---cccceEE--ecHHHHHHHHHHcCce
Confidence 99844 344567789999999988765444321100000 000000000 0000111 1257899999999999
Q ss_pred EEEeccEE
Q 026036 231 VKHLGSRV 238 (244)
Q Consensus 231 v~~~~~~~ 238 (244)
+.......
T Consensus 201 v~~~~~~~ 208 (219)
T TIGR02021 201 IVREGLVS 208 (219)
T ss_pred eeeeeccc
Confidence 99876443
|
This model represents the S-adenosylmethionine-dependent O-methyltransferase responsible for methylation of magnesium protoporphyrin IX. This step is essentiasl for the biosynthesis of both chlorophyll and bacteriochlorophyll. This model encompasses two closely related clades, from cyanobacteria (and plants) where it is called ChlM and other photosynthetic bacteria where it is known as BchM. |
| >PF07021 MetW: Methionine biosynthesis protein MetW; InterPro: IPR010743 This family consists of several bacterial and one archaeal methionine biosynthesis MetW proteins | Back alignment and domain information |
|---|
Probab=99.61 E-value=1.4e-14 Score=110.69 Aligned_cols=149 Identities=15% Similarity=0.281 Sum_probs=104.2
Q ss_pred HHHHHHHhhccCcccCCeEEEeCCCCcHHHHHHHHhCCCeEEEEeCChHHHHHHHHHhHHhcCCCCCcceEeeecCCCCC
Q 026036 63 FSFAEWLMHHREWIERRRCIELGSGTGALAIFLRKAMNLDITTSDYNDQEIEDNIAYNSTTNGITPALPHIKHSWGDAFP 142 (244)
Q Consensus 63 ~~l~~~~~~~~~~~~~~~VLdlG~G~G~~~~~~a~~~~~~v~~~D~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 142 (244)
..+++|+ .+|.||||||||.|.+...+....+.+..|+|++++.+ ..+ -.+++ ..++.+..+.+.
T Consensus 5 ~~I~~~I------~pgsrVLDLGCGdG~LL~~L~~~k~v~g~GvEid~~~v-~~c----v~rGv----~Viq~Dld~gL~ 69 (193)
T PF07021_consen 5 QIIAEWI------EPGSRVLDLGCGDGELLAYLKDEKQVDGYGVEIDPDNV-AAC----VARGV----SVIQGDLDEGLA 69 (193)
T ss_pred HHHHHHc------CCCCEEEecCCCchHHHHHHHHhcCCeEEEEecCHHHH-HHH----HHcCC----CEEECCHHHhHh
Confidence 4556664 37899999999999999888877789999999999876 332 23344 466777766654
Q ss_pred -CCCCCccEEEEcccccCCcChHHHHHHHHHHHHhcCCCCceEeecccccCCC--------CCCCCC---CCeEEEeeee
Q 026036 143 -IPNPDWDLILASDILLYVKQYSNLIKSLSVLLKSYKPKDSQVGHLTKNEQGE--------GTEGLP---WPAFLMSWRR 210 (244)
Q Consensus 143 -~~~~~fD~I~~~~~l~~~~~~~~l~~~l~~~~~~lk~gG~~~~~~~~~~~~~--------~~~~~~---~~~~~~~~~~ 210 (244)
+++++||+||++.++ ++ .....+.++++.|+ |.+.+++.+++.... +.+... +-.|+-...-
T Consensus 70 ~f~d~sFD~VIlsqtL-Q~--~~~P~~vL~EmlRV---gr~~IVsFPNFg~W~~R~~l~~~GrmPvt~~lPy~WYdTPNi 143 (193)
T PF07021_consen 70 DFPDQSFDYVILSQTL-QA--VRRPDEVLEEMLRV---GRRAIVSFPNFGHWRNRLQLLLRGRMPVTKALPYEWYDTPNI 143 (193)
T ss_pred hCCCCCccEEehHhHH-Hh--HhHHHHHHHHHHHh---cCeEEEEecChHHHHHHHHHHhcCCCCCCCCCCCcccCCCCc
Confidence 778899999999999 44 44445888888776 445577755554332 222111 1125544444
Q ss_pred ccCccchhhHHHHHhhcCCeEEEe
Q 026036 211 RIGKEDETIFFTSCENAGLEVKHL 234 (244)
Q Consensus 211 ~~~~~~~~~~~~~l~~~Gf~v~~~ 234 (244)
+..+ ..+|.++|++.|+++++-
T Consensus 144 h~~T--i~DFe~lc~~~~i~I~~~ 165 (193)
T PF07021_consen 144 HLCT--IKDFEDLCRELGIRIEER 165 (193)
T ss_pred cccc--HHHHHHHHHHCCCEEEEE
Confidence 5544 799999999999998764
|
Biosynthesis of methionine from homoserine in Pseudomonas putida takes place in three steps. The first step is the acylation of homoserine to yield an acyl-L-homoserine. This reaction is catalysed by the products of the metXW genes and is equivalent to the first step in enterobacteria, Gram-positive bacteria and fungi, except that in these microorganisms the reaction is catalysed by a single polypeptide (the product of the metA gene in Escherichia coli and the met5 gene product in Neurospora crassa). In P. putida, as in Gram-positive bacteria and certain fungi, the second and third steps are a direct sulphydrylation that converts the O-acyl-L-homoserine into homocysteine and further methylation to yield methionine. The latter reaction can be mediated by either of the two methionine synthetases present in the cells []. |
| >PRK11805 N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.61 E-value=2e-15 Score=126.30 Aligned_cols=181 Identities=14% Similarity=0.082 Sum_probs=115.1
Q ss_pred CcccCCCCCCccCCCCCCCcccccccccceeeeec-ccCCceEEEEecccCCC------CcceeechHHHHHHHHhh-cc
Q 026036 2 DVALFSPSSLFAEEDDVTVDEETMETCNGYVERPH-QFPEMELVIREFAFHQL------NANFLWPGTFSFAEWLMH-HR 73 (244)
Q Consensus 2 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~------~~~~~w~~~~~l~~~~~~-~~ 73 (244)
++++.++..++...+...++ +....+..++.|+. ...+..+.+....+++. ......|.+..+...... ..
T Consensus 51 ~~l~~~~~~l~~~~~~~l~~-~~~~~~~~~~~rr~~~~~Pl~yi~g~~~F~g~~f~v~~~vlipr~~te~lv~~~l~~~~ 129 (307)
T PRK11805 51 HALHLPLDIPEPFLDARLTP-SEKARILELIERRINERIPAAYLTNEAWFCGLEFYVDERVLVPRSPIAELIEDGFAPWL 129 (307)
T ss_pred HHHCcCHHHHhhcccCCCCH-HHHHHHHHHHHHHHHCCccHHHHcCcceEcCcEEEECCCCcCCCCchHHHHHHHHHHHh
Confidence 45667788888777666665 44555666666664 23334444443333221 113344445544444332 11
Q ss_pred CcccCCeEEEeCCCCcHHHHHHHHhC-CCeEEEEeCChHHHHHHHHHhHHhcCCCCCcceEeeecCCCCCCCCCCccEEE
Q 026036 74 EWIERRRCIELGSGTGALAIFLRKAM-NLDITTSDYNDQEIEDNIAYNSTTNGITPALPHIKHSWGDAFPIPNPDWDLIL 152 (244)
Q Consensus 74 ~~~~~~~VLdlG~G~G~~~~~~a~~~-~~~v~~~D~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fD~I~ 152 (244)
......+|||+|||+|.+++.++... ..+|+++|+|+.++ +.+++|+..+++..++..+..++.+.+ +.++||+|+
T Consensus 130 ~~~~~~~VLDlG~GsG~iai~la~~~p~~~V~avDis~~al-~~A~~n~~~~~l~~~i~~~~~D~~~~l--~~~~fDlIv 206 (307)
T PRK11805 130 EDPPVTRILDLCTGSGCIAIACAYAFPDAEVDAVDISPDAL-AVAEINIERHGLEDRVTLIESDLFAAL--PGRRYDLIV 206 (307)
T ss_pred ccCCCCEEEEEechhhHHHHHHHHHCCCCEEEEEeCCHHHH-HHHHHHHHHhCCCCcEEEEECchhhhC--CCCCccEEE
Confidence 21123689999999999999998876 57999999999997 899999988877555555554443332 235799999
Q ss_pred EcccccCCcC----------------------hHHHHHHHHHHHHhcCCCCceEee
Q 026036 153 ASDILLYVKQ----------------------YSNLIKSLSVLLKSYKPKDSQVGH 186 (244)
Q Consensus 153 ~~~~l~~~~~----------------------~~~l~~~l~~~~~~lk~gG~~~~~ 186 (244)
++.+...... .....+.++.+.+.|+|||++++-
T Consensus 207 sNPPyi~~~~~~~l~~~~~~eP~~AL~gg~dGl~~~~~i~~~a~~~L~pgG~l~~E 262 (307)
T PRK11805 207 SNPPYVDAEDMADLPAEYRHEPELALAAGDDGLDLVRRILAEAPDYLTEDGVLVVE 262 (307)
T ss_pred ECCCCCCccchhhcCHhhccCccceeeCCCchHHHHHHHHHHHHHhcCCCCEEEEE
Confidence 9876311100 122347788899999999987764
|
|
| >PRK08317 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=99.61 E-value=2.5e-14 Score=115.60 Aligned_cols=171 Identities=12% Similarity=0.108 Sum_probs=107.6
Q ss_pred echHHHHHHHHhhccCcccCCeEEEeCCCCcHHHHHHHHhC--CCeEEEEeCChHHHHHHHHHhHHhcCCCCCcceEeee
Q 026036 59 WPGTFSFAEWLMHHREWIERRRCIELGSGTGALAIFLRKAM--NLDITTSDYNDQEIEDNIAYNSTTNGITPALPHIKHS 136 (244)
Q Consensus 59 w~~~~~l~~~~~~~~~~~~~~~VLdlG~G~G~~~~~~a~~~--~~~v~~~D~~~~~l~~~~~~~~~~~~~~~~~~~~~~~ 136 (244)
||....+.+.+.......++.+|||+|||+|..+..++... ..+|+++|+++.++ +.++++... ...++..+..+
T Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~vLdiG~G~G~~~~~~a~~~~~~~~v~~~d~~~~~~-~~a~~~~~~--~~~~~~~~~~d 77 (241)
T PRK08317 1 LPDFRRYRARTFELLAVQPGDRVLDVGCGPGNDARELARRVGPEGRVVGIDRSEAML-ALAKERAAG--LGPNVEFVRGD 77 (241)
T ss_pred CchHHHHHHHHHHHcCCCCCCEEEEeCCCCCHHHHHHHHhcCCCcEEEEEeCCHHHH-HHHHHHhhC--CCCceEEEecc
Confidence 34455556666666677788999999999999999888775 46899999999886 666655221 11222333222
Q ss_pred cCCCCCCCCCCccEEEEcccccCCcChHHHHHHHHHHHHhcCCCCceEeecccccCCCCCCCCC------CCeEEEeeee
Q 026036 137 WGDAFPIPNPDWDLILASDILLYVKQYSNLIKSLSVLLKSYKPKDSQVGHLTKNEQGEGTEGLP------WPAFLMSWRR 210 (244)
Q Consensus 137 ~~~~~~~~~~~fD~I~~~~~l~~~~~~~~l~~~l~~~~~~lk~gG~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~ 210 (244)
.. ..++..++||+|++..++.+. .+....++++.++|||||.+++..+............ ...+.. ...
T Consensus 78 ~~-~~~~~~~~~D~v~~~~~~~~~---~~~~~~l~~~~~~L~~gG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~ 152 (241)
T PRK08317 78 AD-GLPFPDGSFDAVRSDRVLQHL---EDPARALAEIARVLRPGGRVVVLDTDWDTLVWHSGDRALMRKILNFWSD-HFA 152 (241)
T ss_pred cc-cCCCCCCCceEEEEechhhcc---CCHHHHHHHHHHHhcCCcEEEEEecCCCceeecCCChHHHHHHHHHHHh-cCC
Confidence 21 234455789999999998333 3445899999999999999988754321110000000 000000 000
Q ss_pred ccCccchhhHHHHHhhcCCeEEEeccEEE
Q 026036 211 RIGKEDETIFFTSCENAGLEVKHLGSRVY 239 (244)
Q Consensus 211 ~~~~~~~~~~~~~l~~~Gf~v~~~~~~~~ 239 (244)
.......+.+.++++||++..+.....
T Consensus 153 --~~~~~~~~~~~l~~aGf~~~~~~~~~~ 179 (241)
T PRK08317 153 --DPWLGRRLPGLFREAGLTDIEVEPYTL 179 (241)
T ss_pred --CCcHHHHHHHHHHHcCCCceeEEEEEE
Confidence 111235788899999998877765443
|
|
| >TIGR03704 PrmC_rel_meth putative protein-(glutamine-N5) methyltransferase, unknown substrate-specific | Back alignment and domain information |
|---|
Probab=99.61 E-value=4.9e-14 Score=114.79 Aligned_cols=150 Identities=14% Similarity=0.093 Sum_probs=102.9
Q ss_pred echHHHHHHHHhhccCc-ccCCeEEEeCCCCcHHHHHHHHhC-CCeEEEEeCChHHHHHHHHHhHHhcCCCCCcceEeee
Q 026036 59 WPGTFSFAEWLMHHREW-IERRRCIELGSGTGALAIFLRKAM-NLDITTSDYNDQEIEDNIAYNSTTNGITPALPHIKHS 136 (244)
Q Consensus 59 w~~~~~l~~~~~~~~~~-~~~~~VLdlG~G~G~~~~~~a~~~-~~~v~~~D~~~~~l~~~~~~~~~~~~~~~~~~~~~~~ 136 (244)
.+.+..+.+.+...... ..+.+|||+|||+|.+++.++... +.+|+++|+|+.++ +.+++|+..++. ..+..+
T Consensus 67 r~~Te~Lv~~~l~~~~~~~~~~~vLDlg~GsG~i~l~la~~~~~~~v~~vDis~~al-~~A~~N~~~~~~----~~~~~D 141 (251)
T TIGR03704 67 RRRTEFLVDEAAALARPRSGTLVVVDLCCGSGAVGAALAAALDGIELHAADIDPAAV-RCARRNLADAGG----TVHEGD 141 (251)
T ss_pred CccHHHHHHHHHHhhcccCCCCEEEEecCchHHHHHHHHHhCCCCEEEEEECCHHHH-HHHHHHHHHcCC----EEEEee
Confidence 35678888887654321 234589999999999999998765 56899999999997 888999887664 334444
Q ss_pred cCCCCCC-CCCCccEEEEcccccCCc-------------C----------hHHHHHHHHHHHHhcCCCCceEeecccccC
Q 026036 137 WGDAFPI-PNPDWDLILASDILLYVK-------------Q----------YSNLIKSLSVLLKSYKPKDSQVGHLTKNEQ 192 (244)
Q Consensus 137 ~~~~~~~-~~~~fD~I~~~~~l~~~~-------------~----------~~~l~~~l~~~~~~lk~gG~~~~~~~~~~~ 192 (244)
+.+.++. ..++||+|+++.+..-.. . ...+.+.++.+.+.|+|||++++.
T Consensus 142 ~~~~l~~~~~~~fDlVv~NPPy~~~~~~~~~~~e~~~~ep~~al~gg~dgl~~~~~i~~~a~~~L~~gG~l~l~------ 215 (251)
T TIGR03704 142 LYDALPTALRGRVDILAANAPYVPTDAIALMPPEARDHEPRVALDGGADGLDVLRRVAAGAPDWLAPGGHLLVE------ 215 (251)
T ss_pred chhhcchhcCCCEeEEEECCCCCCchhhhcCCHHHHhCCCHHHhcCCCcHHHHHHHHHHHHHHhcCCCCEEEEE------
Confidence 4333221 135799999988753111 0 111347777888999999988765
Q ss_pred CCCCCCCCCCeEEEeeeeccCccchhhHHHHHhhcCCeEEEeccEE
Q 026036 193 GEGTEGLPWPAFLMSWRRRIGKEDETIFFTSCENAGLEVKHLGSRV 238 (244)
Q Consensus 193 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gf~v~~~~~~~ 238 (244)
+.. ....++...++++||+..-+....
T Consensus 216 ---------------~~~----~~~~~v~~~l~~~g~~~~~~~~~~ 242 (251)
T TIGR03704 216 ---------------TSE----RQAPLAVEAFARAGLIARVASSEE 242 (251)
T ss_pred ---------------ECc----chHHHHHHHHHHCCCCceeeEccc
Confidence 111 113578888999999876655443
|
This protein family is closely related to two different families of protein-(glutamine-N5) methyltransferase. The first is PrmB, which modifies ribosomal protein L3 in some bacteria. The second is PrmC (HemK), which modifies peptide chain release factors 1 and 2 in most bacteria and also in eukaryotes. The glutamine side chain-binding motif NPPY shared by PrmB and PrmC is N[VAT]PY in this family. The protein substrate is unknown. |
| >PRK04266 fibrillarin; Provisional | Back alignment and domain information |
|---|
Probab=99.61 E-value=7.4e-14 Score=111.73 Aligned_cols=150 Identities=7% Similarity=-0.005 Sum_probs=91.8
Q ss_pred hHHHHHHHHhhccCcccCCeEEEeCCCCcHHHHHHHHhC-CCeEEEEeCChHHHHHHHHHhHHhcCCCCCcceEeeecCC
Q 026036 61 GTFSFAEWLMHHREWIERRRCIELGSGTGALAIFLRKAM-NLDITTSDYNDQEIEDNIAYNSTTNGITPALPHIKHSWGD 139 (244)
Q Consensus 61 ~~~~l~~~~~~~~~~~~~~~VLdlG~G~G~~~~~~a~~~-~~~v~~~D~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 139 (244)
++..++.+ +...+.++.+|||+|||+|..+..++... ..+|+++|+++.|+ +.+.+++... .++..+..+..+
T Consensus 58 ~~~ll~~~--~~l~i~~g~~VlD~G~G~G~~~~~la~~v~~g~V~avD~~~~ml-~~l~~~a~~~---~nv~~i~~D~~~ 131 (226)
T PRK04266 58 AAAILKGL--KNFPIKKGSKVLYLGAASGTTVSHVSDIVEEGVVYAVEFAPRPM-RELLEVAEER---KNIIPILADARK 131 (226)
T ss_pred HHHHHhhH--hhCCCCCCCEEEEEccCCCHHHHHHHHhcCCCeEEEEECCHHHH-HHHHHHhhhc---CCcEEEECCCCC
Confidence 44444444 23566788999999999999999998875 46899999999987 4444443321 112333323222
Q ss_pred CC--CCCCCCccEEEEcccccCCcChHHHHHHHHHHHHhcCCCCceEeecccccCCCCCCCCCCCeEEEeeeeccCccch
Q 026036 140 AF--PIPNPDWDLILASDILLYVKQYSNLIKSLSVLLKSYKPKDSQVGHLTKNEQGEGTEGLPWPAFLMSWRRRIGKEDE 217 (244)
Q Consensus 140 ~~--~~~~~~fD~I~~~~~l~~~~~~~~l~~~l~~~~~~lk~gG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 217 (244)
+. ....++||+|++... ...+...+++++.+.|||||++++.++...- .+.....+++
T Consensus 132 ~~~~~~l~~~~D~i~~d~~-----~p~~~~~~L~~~~r~LKpGG~lvI~v~~~~~----------d~~~~~~~~~----- 191 (226)
T PRK04266 132 PERYAHVVEKVDVIYQDVA-----QPNQAEIAIDNAEFFLKDGGYLLLAIKARSI----------DVTKDPKEIF----- 191 (226)
T ss_pred cchhhhccccCCEEEECCC-----ChhHHHHHHHHHHHhcCCCcEEEEEEecccc----------cCcCCHHHHH-----
Confidence 11 111346999986321 1222235689999999999999986433100 0111111111
Q ss_pred hhHHHHHhhcCCeEEEecc
Q 026036 218 TIFFTSCENAGLEVKHLGS 236 (244)
Q Consensus 218 ~~~~~~l~~~Gf~v~~~~~ 236 (244)
+...+.++++||+++...+
T Consensus 192 ~~~~~~l~~aGF~~i~~~~ 210 (226)
T PRK04266 192 KEEIRKLEEGGFEILEVVD 210 (226)
T ss_pred HHHHHHHHHcCCeEEEEEc
Confidence 2345889999999887754
|
|
| >PRK00377 cbiT cobalt-precorrin-6Y C(15)-methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.60 E-value=4.4e-14 Score=111.31 Aligned_cols=132 Identities=16% Similarity=0.173 Sum_probs=93.2
Q ss_pred hhccCcccCCeEEEeCCCCcHHHHHHHHhC--CCeEEEEeCChHHHHHHHHHhHHhcCCCCCcceEeeecCCCCCCCCCC
Q 026036 70 MHHREWIERRRCIELGSGTGALAIFLRKAM--NLDITTSDYNDQEIEDNIAYNSTTNGITPALPHIKHSWGDAFPIPNPD 147 (244)
Q Consensus 70 ~~~~~~~~~~~VLdlG~G~G~~~~~~a~~~--~~~v~~~D~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 147 (244)
.......++.+|||+|||+|.+++.+++.. ..+|+++|+++.++ +.+++|+..+++..++..+..+..+.++...++
T Consensus 33 l~~l~~~~~~~vlDlG~GtG~~s~~~a~~~~~~~~v~avD~~~~~~-~~a~~n~~~~g~~~~v~~~~~d~~~~l~~~~~~ 111 (198)
T PRK00377 33 LSKLRLRKGDMILDIGCGTGSVTVEASLLVGETGKVYAVDKDEKAI-NLTRRNAEKFGVLNNIVLIKGEAPEILFTINEK 111 (198)
T ss_pred HHHcCCCCcCEEEEeCCcCCHHHHHHHHHhCCCCEEEEEECCHHHH-HHHHHHHHHhCCCCCeEEEEechhhhHhhcCCC
Confidence 344566788999999999999999987753 46899999999987 888888888775344444433332322333468
Q ss_pred ccEEEEcccccCCcChHHHHHHHHHHHHhcCCCCceEeecccccCCCCCCCCCCCeEEEeeeeccCccchhhHHHHHhhc
Q 026036 148 WDLILASDILLYVKQYSNLIKSLSVLLKSYKPKDSQVGHLTKNEQGEGTEGLPWPAFLMSWRRRIGKEDETIFFTSCENA 227 (244)
Q Consensus 148 fD~I~~~~~l~~~~~~~~l~~~l~~~~~~lk~gG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 227 (244)
||.|++... ...+...++.+.+.|||||++++.... . ++.....+.+++.
T Consensus 112 ~D~V~~~~~------~~~~~~~l~~~~~~LkpgG~lv~~~~~----------------------~--~~~~~~~~~l~~~ 161 (198)
T PRK00377 112 FDRIFIGGG------SEKLKEIISASWEIIKKGGRIVIDAIL----------------------L--ETVNNALSALENI 161 (198)
T ss_pred CCEEEECCC------cccHHHHHHHHHHHcCCCcEEEEEeec----------------------H--HHHHHHHHHHHHc
Confidence 999998532 223458899999999999988764111 1 1236777888889
Q ss_pred CCeEE
Q 026036 228 GLEVK 232 (244)
Q Consensus 228 Gf~v~ 232 (244)
||.++
T Consensus 162 g~~~~ 166 (198)
T PRK00377 162 GFNLE 166 (198)
T ss_pred CCCeE
Confidence 98544
|
|
| >TIGR02469 CbiT precorrin-6Y C5,15-methyltransferase (decarboxylating), CbiT subunit | Back alignment and domain information |
|---|
Probab=99.60 E-value=5.4e-14 Score=102.11 Aligned_cols=115 Identities=14% Similarity=0.177 Sum_probs=81.9
Q ss_pred HHHHHHhhccCcccCCeEEEeCCCCcHHHHHHHHhC-CCeEEEEeCChHHHHHHHHHhHHhcCCCCCcceEeeecCCCCC
Q 026036 64 SFAEWLMHHREWIERRRCIELGSGTGALAIFLRKAM-NLDITTSDYNDQEIEDNIAYNSTTNGITPALPHIKHSWGDAFP 142 (244)
Q Consensus 64 ~l~~~~~~~~~~~~~~~VLdlG~G~G~~~~~~a~~~-~~~v~~~D~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 142 (244)
.+...+.......++.+|||+|||+|..+..+++.. ..+|+++|+++.++ +.+++++..++.. ++..+..+..+..+
T Consensus 6 ~~~~~~~~~~~~~~~~~vldlG~G~G~~~~~l~~~~~~~~v~~vD~s~~~~-~~a~~~~~~~~~~-~~~~~~~~~~~~~~ 83 (124)
T TIGR02469 6 EVRALTLSKLRLRPGDVLWDIGAGSGSITIEAARLVPNGRVYAIERNPEAL-RLIERNARRFGVS-NIVIVEGDAPEALE 83 (124)
T ss_pred HHHHHHHHHcCCCCCCEEEEeCCCCCHHHHHHHHHCCCceEEEEcCCHHHH-HHHHHHHHHhCCC-ceEEEeccccccCh
Confidence 334445555555567899999999999999998875 57899999999987 8888887766553 22333222222122
Q ss_pred CCCCCccEEEEcccccCCcChHHHHHHHHHHHHhcCCCCceEee
Q 026036 143 IPNPDWDLILASDILLYVKQYSNLIKSLSVLLKSYKPKDSQVGH 186 (244)
Q Consensus 143 ~~~~~fD~I~~~~~l~~~~~~~~l~~~l~~~~~~lk~gG~~~~~ 186 (244)
...++||+|++.... ....+.++.+.+.|+|||++++.
T Consensus 84 ~~~~~~D~v~~~~~~------~~~~~~l~~~~~~Lk~gG~li~~ 121 (124)
T TIGR02469 84 DSLPEPDRVFIGGSG------GLLQEILEAIWRRLRPGGRIVLN 121 (124)
T ss_pred hhcCCCCEEEECCcc------hhHHHHHHHHHHHcCCCCEEEEE
Confidence 234589999986543 23348899999999999998876
|
This model recognizes the CbiT methylase which is responsible, in part (along with CbiE), for methylating precorrin-6y (or cobalt-precorrin-6y) at both the 5 and 15 positions as well as the concomitant decarbozylation at C-12. In many organisms, this protein is fused to the CbiE subunit. The fused protein, when found in organisms catalyzing the oxidative version of the cobalamin biosynthesis pathway, is called CobL. |
| >PRK09328 N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.59 E-value=1e-14 Score=120.68 Aligned_cols=150 Identities=18% Similarity=0.281 Sum_probs=103.1
Q ss_pred ceeechHHHHHHHHhhccCcccCCeEEEeCCCCcHHHHHHHHhC-CCeEEEEeCChHHHHHHHHHhHHhcCCCCCcceEe
Q 026036 56 NFLWPGTFSFAEWLMHHREWIERRRCIELGSGTGALAIFLRKAM-NLDITTSDYNDQEIEDNIAYNSTTNGITPALPHIK 134 (244)
Q Consensus 56 ~~~w~~~~~l~~~~~~~~~~~~~~~VLdlG~G~G~~~~~~a~~~-~~~v~~~D~~~~~l~~~~~~~~~~~~~~~~~~~~~ 134 (244)
....|.+..+.+++.......++.+|||+|||+|.+++.++... ..+|+++|+++.++ +.++.|.. +....++..+.
T Consensus 87 lipr~~te~l~~~~~~~~~~~~~~~vLDiG~GsG~~~~~la~~~~~~~v~~iDis~~~l-~~a~~n~~-~~~~~~i~~~~ 164 (275)
T PRK09328 87 LIPRPETEELVEWALEALLLKEPLRVLDLGTGSGAIALALAKERPDAEVTAVDISPEAL-AVARRNAK-HGLGARVEFLQ 164 (275)
T ss_pred eeCCCCcHHHHHHHHHhccccCCCEEEEEcCcHHHHHHHHHHHCCCCEEEEEECCHHHH-HHHHHHHH-hCCCCcEEEEE
Confidence 44566788888888755555577899999999999999998876 57899999999987 78888876 22223344444
Q ss_pred eecCCCCCCCCCCccEEEEcccccCCc-----------------------ChHHHHHHHHHHHHhcCCCCceEeeccccc
Q 026036 135 HSWGDAFPIPNPDWDLILASDILLYVK-----------------------QYSNLIKSLSVLLKSYKPKDSQVGHLTKNE 191 (244)
Q Consensus 135 ~~~~~~~~~~~~~fD~I~~~~~l~~~~-----------------------~~~~l~~~l~~~~~~lk~gG~~~~~~~~~~ 191 (244)
.++.+.. ..++||+|+++.+..... ......+.++++.+.|+|||.+++.+
T Consensus 165 ~d~~~~~--~~~~fD~Iv~npPy~~~~~~~~~~~~v~~~ep~~al~~g~~g~~~~~~~~~~~~~~Lk~gG~l~~e~---- 238 (275)
T PRK09328 165 GDWFEPL--PGGRFDLIVSNPPYIPEADIHLLQPEVRDHEPHLALFGGEDGLDFYRRIIEQAPRYLKPGGWLLLEI---- 238 (275)
T ss_pred ccccCcC--CCCceeEEEECCCcCCcchhhhCCchhhhcCCchhhcCCCCHHHHHHHHHHHHHHhcccCCEEEEEE----
Confidence 4443322 246899999987642110 01223467788889999999877641
Q ss_pred CCCCCCCCCCCeEEEeeeeccCccchhhHHHHHhhcCCeEEEe
Q 026036 192 QGEGTEGLPWPAFLMSWRRRIGKEDETIFFTSCENAGLEVKHL 234 (244)
Q Consensus 192 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gf~v~~~ 234 (244)
.. .....+.+++++.||....+
T Consensus 239 -----------------g~----~~~~~~~~~l~~~gf~~v~~ 260 (275)
T PRK09328 239 -----------------GY----DQGEAVRALLAAAGFADVET 260 (275)
T ss_pred -----------------Cc----hHHHHHHHHHHhCCCceeEE
Confidence 11 11256778888999964433
|
|
| >PRK12335 tellurite resistance protein TehB; Provisional | Back alignment and domain information |
|---|
Probab=99.58 E-value=2.5e-14 Score=119.05 Aligned_cols=103 Identities=16% Similarity=0.282 Sum_probs=79.3
Q ss_pred cCCeEEEeCCCCcHHHHHHHHhCCCeEEEEeCChHHHHHHHHHhHHhcCCCCCcceEeeecCCCCCCCCCCccEEEEccc
Q 026036 77 ERRRCIELGSGTGALAIFLRKAMNLDITTSDYNDQEIEDNIAYNSTTNGITPALPHIKHSWGDAFPIPNPDWDLILASDI 156 (244)
Q Consensus 77 ~~~~VLdlG~G~G~~~~~~a~~~~~~v~~~D~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fD~I~~~~~ 156 (244)
++.+|||+|||+|..++.++.. +.+|+++|+|+.++ +.+++++..+++ .+.....+..+ .. .+++||+|+++.+
T Consensus 120 ~~~~vLDlGcG~G~~~~~la~~-g~~V~avD~s~~ai-~~~~~~~~~~~l--~v~~~~~D~~~-~~-~~~~fD~I~~~~v 193 (287)
T PRK12335 120 KPGKALDLGCGQGRNSLYLALL-GFDVTAVDINQQSL-ENLQEIAEKENL--NIRTGLYDINS-AS-IQEEYDFILSTVV 193 (287)
T ss_pred CCCCEEEeCCCCCHHHHHHHHC-CCEEEEEECCHHHH-HHHHHHHHHcCC--ceEEEEechhc-cc-ccCCccEEEEcch
Confidence 4569999999999999999876 67999999999987 778887777665 23333222222 12 2568999999998
Q ss_pred ccCCcChHHHHHHHHHHHHhcCCCCceEee
Q 026036 157 LLYVKQYSNLIKSLSVLLKSYKPKDSQVGH 186 (244)
Q Consensus 157 l~~~~~~~~l~~~l~~~~~~lk~gG~~~~~ 186 (244)
+ ++...+.....++++.+.|+|||.+++.
T Consensus 194 l-~~l~~~~~~~~l~~~~~~LkpgG~~l~v 222 (287)
T PRK12335 194 L-MFLNRERIPAIIKNMQEHTNPGGYNLIV 222 (287)
T ss_pred h-hhCCHHHHHHHHHHHHHhcCCCcEEEEE
Confidence 8 4445567779999999999999997665
|
|
| >PRK05134 bifunctional 3-demethylubiquinone-9 3-methyltransferase/ 2-octaprenyl-6-hydroxy phenol methylase; Provisional | Back alignment and domain information |
|---|
Probab=99.58 E-value=3.5e-14 Score=114.69 Aligned_cols=166 Identities=14% Similarity=0.140 Sum_probs=105.2
Q ss_pred HHHHHHhhccCcccCCeEEEeCCCCcHHHHHHHHhCCCeEEEEeCChHHHHHHHHHhHHhcCCCCCcceEeeecCCCCCC
Q 026036 64 SFAEWLMHHREWIERRRCIELGSGTGALAIFLRKAMNLDITTSDYNDQEIEDNIAYNSTTNGITPALPHIKHSWGDAFPI 143 (244)
Q Consensus 64 ~l~~~~~~~~~~~~~~~VLdlG~G~G~~~~~~a~~~~~~v~~~D~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 143 (244)
...+++.......++.+|||||||+|.++..+++. +.+|+++|+++.++ +.++.+....+. .+..+..+..+....
T Consensus 35 ~~~~~l~~~~~~~~~~~vLdiG~G~G~~~~~l~~~-~~~v~~iD~s~~~~-~~a~~~~~~~~~--~~~~~~~~~~~~~~~ 110 (233)
T PRK05134 35 LRLNYIREHAGGLFGKRVLDVGCGGGILSESMARL-GADVTGIDASEENI-EVARLHALESGL--KIDYRQTTAEELAAE 110 (233)
T ss_pred HHHHHHHHhccCCCCCeEEEeCCCCCHHHHHHHHc-CCeEEEEcCCHHHH-HHHHHHHHHcCC--ceEEEecCHHHhhhh
Confidence 33456665555567889999999999999888775 67899999999886 677766655443 222333333222222
Q ss_pred CCCCccEEEEcccccCCcChHHHHHHHHHHHHhcCCCCceEeecccccCCCCC--------CCCCCCeEEEeeeeccCcc
Q 026036 144 PNPDWDLILASDILLYVKQYSNLIKSLSVLLKSYKPKDSQVGHLTKNEQGEGT--------EGLPWPAFLMSWRRRIGKE 215 (244)
Q Consensus 144 ~~~~fD~I~~~~~l~~~~~~~~l~~~l~~~~~~lk~gG~~~~~~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~~ 215 (244)
..++||+|+++.++.+. ++....++.+.+.|+|||++++........... .....+. ......++.
T Consensus 111 ~~~~fD~Ii~~~~l~~~---~~~~~~l~~~~~~L~~gG~l~v~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~-- 184 (233)
T PRK05134 111 HPGQFDVVTCMEMLEHV---PDPASFVRACAKLVKPGGLVFFSTLNRNLKSYLLAIVGAEYVLRMLPK-GTHDYKKFI-- 184 (233)
T ss_pred cCCCccEEEEhhHhhcc---CCHHHHHHHHHHHcCCCcEEEEEecCCChHHHHHHHhhHHHHhhhcCc-ccCchhhcC--
Confidence 34689999999988443 344488899999999999988774321110000 0000000 000011122
Q ss_pred chhhHHHHHhhcCCeEEEeccEEE
Q 026036 216 DETIFFTSCENAGLEVKHLGSRVY 239 (244)
Q Consensus 216 ~~~~~~~~l~~~Gf~v~~~~~~~~ 239 (244)
+..++.++++++||+++......|
T Consensus 185 ~~~~~~~~l~~~Gf~~v~~~~~~~ 208 (233)
T PRK05134 185 KPSELAAWLRQAGLEVQDITGLHY 208 (233)
T ss_pred CHHHHHHHHHHCCCeEeeeeeEEe
Confidence 247789999999999987765443
|
|
| >PRK01683 trans-aconitate 2-methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.57 E-value=1e-13 Score=113.68 Aligned_cols=111 Identities=17% Similarity=0.173 Sum_probs=79.2
Q ss_pred HHHHhhccCcccCCeEEEeCCCCcHHHHHHHHhC-CCeEEEEeCChHHHHHHHHHhHHhcCCCCCcceEeeecCCCCCCC
Q 026036 66 AEWLMHHREWIERRRCIELGSGTGALAIFLRKAM-NLDITTSDYNDQEIEDNIAYNSTTNGITPALPHIKHSWGDAFPIP 144 (244)
Q Consensus 66 ~~~~~~~~~~~~~~~VLdlG~G~G~~~~~~a~~~-~~~v~~~D~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 144 (244)
++.+.......++.+|||||||+|.++..++... +.+|+++|+|+.++ +.++++.. ++..+..+..+. ..
T Consensus 20 ~~~ll~~~~~~~~~~vLDiGcG~G~~~~~la~~~~~~~v~gvD~s~~~i-~~a~~~~~------~~~~~~~d~~~~--~~ 90 (258)
T PRK01683 20 ARDLLARVPLENPRYVVDLGCGPGNSTELLVERWPAARITGIDSSPAML-AEARSRLP------DCQFVEADIASW--QP 90 (258)
T ss_pred HHHHHhhCCCcCCCEEEEEcccCCHHHHHHHHHCCCCEEEEEECCHHHH-HHHHHhCC------CCeEEECchhcc--CC
Confidence 3334444455678899999999999999998775 67999999999987 66665531 122222222111 12
Q ss_pred CCCccEEEEcccccCCcChHHHHHHHHHHHHhcCCCCceEeecc
Q 026036 145 NPDWDLILASDILLYVKQYSNLIKSLSVLLKSYKPKDSQVGHLT 188 (244)
Q Consensus 145 ~~~fD~I~~~~~l~~~~~~~~l~~~l~~~~~~lk~gG~~~~~~~ 188 (244)
.++||+|+++.++ ++. ++..+.++++.+.|||||.+++.++
T Consensus 91 ~~~fD~v~~~~~l-~~~--~d~~~~l~~~~~~LkpgG~~~~~~~ 131 (258)
T PRK01683 91 PQALDLIFANASL-QWL--PDHLELFPRLVSLLAPGGVLAVQMP 131 (258)
T ss_pred CCCccEEEEccCh-hhC--CCHHHHHHHHHHhcCCCcEEEEECC
Confidence 3589999999998 443 3445899999999999999988743
|
|
| >PRK00121 trmB tRNA (guanine-N(7)-)-methyltransferase; Reviewed | Back alignment and domain information |
|---|
Probab=99.57 E-value=1.4e-14 Score=114.40 Aligned_cols=130 Identities=12% Similarity=0.104 Sum_probs=89.8
Q ss_pred cCCeEEEeCCCCcHHHHHHHHhC-CCeEEEEeCChHHHHHHHHHhHHhcCCCCCcceEeeecCCCCC--CCCCCccEEEE
Q 026036 77 ERRRCIELGSGTGALAIFLRKAM-NLDITTSDYNDQEIEDNIAYNSTTNGITPALPHIKHSWGDAFP--IPNPDWDLILA 153 (244)
Q Consensus 77 ~~~~VLdlG~G~G~~~~~~a~~~-~~~v~~~D~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~fD~I~~ 153 (244)
++.+|||+|||+|..+..+++.. ..+|+++|++++++ +.++++...++. .++..+..+..+.++ +..++||+|++
T Consensus 40 ~~~~VLDiGcGtG~~~~~la~~~p~~~v~gVD~s~~~i-~~a~~~~~~~~~-~~v~~~~~d~~~~l~~~~~~~~~D~V~~ 117 (202)
T PRK00121 40 DAPIHLEIGFGKGEFLVEMAKANPDINFIGIEVHEPGV-GKALKKIEEEGL-TNLRLLCGDAVEVLLDMFPDGSLDRIYL 117 (202)
T ss_pred CCCeEEEEccCCCHHHHHHHHHCCCccEEEEEechHHH-HHHHHHHHHcCC-CCEEEEecCHHHHHHHHcCccccceEEE
Confidence 56799999999999999998775 56899999999997 788887777665 233444433311122 44568999998
Q ss_pred cccccCCcC-----hHHHHHHHHHHHHhcCCCCceEeecccccCCCCCCCCCCCeEEEeeeeccCccchhhHHHHHhhcC
Q 026036 154 SDILLYVKQ-----YSNLIKSLSVLLKSYKPKDSQVGHLTKNEQGEGTEGLPWPAFLMSWRRRIGKEDETIFFTSCENAG 228 (244)
Q Consensus 154 ~~~l~~~~~-----~~~l~~~l~~~~~~lk~gG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~G 228 (244)
+.+...... .......++++.++|||||.+++.+... . ....+.+.+++.|
T Consensus 118 ~~~~p~~~~~~~~~~~~~~~~l~~i~~~LkpgG~l~i~~~~~--------------------~----~~~~~~~~~~~~g 173 (202)
T PRK00121 118 NFPDPWPKKRHHKRRLVQPEFLALYARKLKPGGEIHFATDWE--------------------G----YAEYMLEVLSAEG 173 (202)
T ss_pred ECCCCCCCccccccccCCHHHHHHHHHHcCCCCEEEEEcCCH--------------------H----HHHHHHHHHHhCc
Confidence 754311110 0013478999999999999988762111 1 1256778888899
Q ss_pred CeEE
Q 026036 229 LEVK 232 (244)
Q Consensus 229 f~v~ 232 (244)
+++.
T Consensus 174 ~~~~ 177 (202)
T PRK00121 174 GFLV 177 (202)
T ss_pred cccc
Confidence 8776
|
|
| >PRK15451 tRNA cmo(5)U34 methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.57 E-value=3e-14 Score=116.04 Aligned_cols=106 Identities=15% Similarity=0.124 Sum_probs=81.1
Q ss_pred cCCeEEEeCCCCcHHHHHHHHh---CCCeEEEEeCChHHHHHHHHHhHHhcCCCCCcceEeeecCCCCCCCCCCccEEEE
Q 026036 77 ERRRCIELGSGTGALAIFLRKA---MNLDITTSDYNDQEIEDNIAYNSTTNGITPALPHIKHSWGDAFPIPNPDWDLILA 153 (244)
Q Consensus 77 ~~~~VLdlG~G~G~~~~~~a~~---~~~~v~~~D~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fD~I~~ 153 (244)
++.+|||||||+|..+..+++. .+.+|+++|+|+.|+ +.++++...++...++..+..+. ...+.+.+|+|++
T Consensus 56 ~~~~vLDlGcGtG~~~~~l~~~~~~~~~~v~gvD~S~~ml-~~A~~~~~~~~~~~~v~~~~~d~---~~~~~~~~D~vv~ 131 (247)
T PRK15451 56 PGTQVYDLGCSLGAATLSVRRNIHHDNCKIIAIDNSPAMI-ERCRRHIDAYKAPTPVDVIEGDI---RDIAIENASMVVL 131 (247)
T ss_pred CCCEEEEEcccCCHHHHHHHHhcCCCCCeEEEEeCCHHHH-HHHHHHHHhcCCCCCeEEEeCCh---hhCCCCCCCEEeh
Confidence 6789999999999999888763 267999999999998 88888877655543444443332 2223346999999
Q ss_pred cccccCCcChHHHHHHHHHHHHhcCCCCceEeec
Q 026036 154 SDILLYVKQYSNLIKSLSVLLKSYKPKDSQVGHL 187 (244)
Q Consensus 154 ~~~l~~~~~~~~l~~~l~~~~~~lk~gG~~~~~~ 187 (244)
+.++ ++...+....+++++++.|||||.+++..
T Consensus 132 ~~~l-~~l~~~~~~~~l~~i~~~LkpGG~l~l~e 164 (247)
T PRK15451 132 NFTL-QFLEPSERQALLDKIYQGLNPGGALVLSE 164 (247)
T ss_pred hhHH-HhCCHHHHHHHHHHHHHhcCCCCEEEEEE
Confidence 9888 54445566789999999999999998873
|
|
| >PF13659 Methyltransf_26: Methyltransferase domain; PDB: 3GJY_A 3LPM_B 2NP6_D 1AQI_B 2ADM_B 2IH2_A 2JG3_A 2IBS_D 2NP7_A 2IBT_A | Back alignment and domain information |
|---|
Probab=99.57 E-value=9.5e-15 Score=105.25 Aligned_cols=109 Identities=18% Similarity=0.202 Sum_probs=82.6
Q ss_pred CCeEEEeCCCCcHHHHHHHHhCCCeEEEEeCChHHHHHHHHHhHHhcCCCCCcceEeeecCCCC-CCCCCCccEEEEccc
Q 026036 78 RRRCIELGSGTGALAIFLRKAMNLDITTSDYNDQEIEDNIAYNSTTNGITPALPHIKHSWGDAF-PIPNPDWDLILASDI 156 (244)
Q Consensus 78 ~~~VLdlG~G~G~~~~~~a~~~~~~v~~~D~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~fD~I~~~~~ 156 (244)
|.+|||+|||+|.+.+.+++.+..+++++|+++..+ +.++.+...++...++..+..+..+.. ....++||+|+++.+
T Consensus 1 g~~vlD~~~G~G~~~~~~~~~~~~~~~gvdi~~~~~-~~a~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~D~Iv~npP 79 (117)
T PF13659_consen 1 GDRVLDPGCGSGTFLLAALRRGAARVTGVDIDPEAV-ELARRNLPRNGLDDRVEVIVGDARDLPEPLPDGKFDLIVTNPP 79 (117)
T ss_dssp TEEEEEETSTTCHHHHHHHHHCTCEEEEEESSHHHH-HHHHHHCHHCTTTTTEEEEESHHHHHHHTCTTT-EEEEEE--S
T ss_pred CCEEEEcCcchHHHHHHHHHHCCCeEEEEEECHHHH-HHHHHHHHHccCCceEEEEECchhhchhhccCceeEEEEECCC
Confidence 569999999999999999988668999999999987 889999988877666666655554332 345678999999998
Q ss_pred ccCCcC-----hHHHHHHHHHHHHhcCCCCceEeec
Q 026036 157 LLYVKQ-----YSNLIKSLSVLLKSYKPKDSQVGHL 187 (244)
Q Consensus 157 l~~~~~-----~~~l~~~l~~~~~~lk~gG~~~~~~ 187 (244)
+..... .......++++.+.|||||.+++.+
T Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~~~~L~~gG~~~~~~ 115 (117)
T PF13659_consen 80 YGPRSGDKAALRRLYSRFLEAAARLLKPGGVLVFIT 115 (117)
T ss_dssp TTSBTT----GGCHHHHHHHHHHHHEEEEEEEEEEE
T ss_pred CccccccchhhHHHHHHHHHHHHHHcCCCeEEEEEe
Confidence 743211 1234578899999999999988763
|
... |
| >TIGR02716 C20_methyl_CrtF C-20 methyltransferase BchU | Back alignment and domain information |
|---|
Probab=99.56 E-value=1.1e-13 Score=116.25 Aligned_cols=159 Identities=14% Similarity=0.141 Sum_probs=104.6
Q ss_pred HHHhhccCcccCCeEEEeCCCCcHHHHHHHHhC-CCeEEEEeCChHHHHHHHHHhHHhcCCCCCcceEeeecCCCCCCCC
Q 026036 67 EWLMHHREWIERRRCIELGSGTGALAIFLRKAM-NLDITTSDYNDQEIEDNIAYNSTTNGITPALPHIKHSWGDAFPIPN 145 (244)
Q Consensus 67 ~~~~~~~~~~~~~~VLdlG~G~G~~~~~~a~~~-~~~v~~~D~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 145 (244)
+.+.+.....++.+|||+|||+|.+++.+++.. ..+++++|. +.++ +.+++++...++.+++..+..+. .....
T Consensus 139 ~~l~~~~~~~~~~~vlDiG~G~G~~~~~~~~~~p~~~~~~~D~-~~~~-~~a~~~~~~~gl~~rv~~~~~d~---~~~~~ 213 (306)
T TIGR02716 139 QLLLEEAKLDGVKKMIDVGGGIGDISAAMLKHFPELDSTILNL-PGAI-DLVNENAAEKGVADRMRGIAVDI---YKESY 213 (306)
T ss_pred HHHHHHcCCCCCCEEEEeCCchhHHHHHHHHHCCCCEEEEEec-HHHH-HHHHHHHHhCCccceEEEEecCc---cCCCC
Confidence 444444455577899999999999999999886 578999998 5666 78888888777755555544433 22122
Q ss_pred CCccEEEEcccccCCcChHHHHHHHHHHHHhcCCCCceEeecccccCCCCCCCCC------CCeEEEeeeeccCccchhh
Q 026036 146 PDWDLILASDILLYVKQYSNLIKSLSVLLKSYKPKDSQVGHLTKNEQGEGTEGLP------WPAFLMSWRRRIGKEDETI 219 (244)
Q Consensus 146 ~~fD~I~~~~~l~~~~~~~~l~~~l~~~~~~lk~gG~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~ 219 (244)
+.+|+|+++.++++ ...+...+.++++++.|+|||++++............... ...+..... .. ...++
T Consensus 214 ~~~D~v~~~~~lh~-~~~~~~~~il~~~~~~L~pgG~l~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~--~~~~e 289 (306)
T TIGR02716 214 PEADAVLFCRILYS-ANEQLSTIMCKKAFDAMRSGGRLLILDMVIDDPENPNFDYLSHYILGAGMPFSVL-GF--KEQAR 289 (306)
T ss_pred CCCCEEEeEhhhhc-CChHHHHHHHHHHHHhcCCCCEEEEEEeccCCCCCchhhHHHHHHHHcccccccc-cC--CCHHH
Confidence 34799999998844 3445567899999999999999998844332221110000 000011111 11 12478
Q ss_pred HHHHHhhcCCeEEEe
Q 026036 220 FFTSCENAGLEVKHL 234 (244)
Q Consensus 220 ~~~~l~~~Gf~v~~~ 234 (244)
+.++++++||+.+.+
T Consensus 290 ~~~ll~~aGf~~v~~ 304 (306)
T TIGR02716 290 YKEILESLGYKDVTM 304 (306)
T ss_pred HHHHHHHcCCCeeEe
Confidence 999999999986653
|
Members of this protein family are the S-adenosylmethionine-depenedent C-20 methyltransferase BchU, part of the pathway of bacteriochlorophyll c production in photosynthetic green sulfur bacteria. The position modified by this enzyme represents the difference between bacteriochlorophylls c and d; strains lacking this protein can only produced bacteriochlorophyll d. |
| >PRK00216 ubiE ubiquinone/menaquinone biosynthesis methyltransferase; Reviewed | Back alignment and domain information |
|---|
Probab=99.56 E-value=1.7e-13 Score=110.83 Aligned_cols=108 Identities=20% Similarity=0.263 Sum_probs=79.9
Q ss_pred cccCCeEEEeCCCCcHHHHHHHHhCC--CeEEEEeCChHHHHHHHHHhHHhcCCCCCcceEeeecCCCCCCCCCCccEEE
Q 026036 75 WIERRRCIELGSGTGALAIFLRKAMN--LDITTSDYNDQEIEDNIAYNSTTNGITPALPHIKHSWGDAFPIPNPDWDLIL 152 (244)
Q Consensus 75 ~~~~~~VLdlG~G~G~~~~~~a~~~~--~~v~~~D~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fD~I~ 152 (244)
..++.+|||+|||+|..+..++..+. .+|+++|+++.++ +.++++...++...++..+..+..+ .+...++||+|+
T Consensus 49 ~~~~~~vldiG~G~G~~~~~l~~~~~~~~~v~~~D~s~~~~-~~a~~~~~~~~~~~~~~~~~~d~~~-~~~~~~~~D~I~ 126 (239)
T PRK00216 49 VRPGDKVLDLACGTGDLAIALAKAVGKTGEVVGLDFSEGML-AVGREKLRDLGLSGNVEFVQGDAEA-LPFPDNSFDAVT 126 (239)
T ss_pred CCCCCeEEEeCCCCCHHHHHHHHHcCCCCeEEEEeCCHHHH-HHHHHhhcccccccCeEEEeccccc-CCCCCCCccEEE
Confidence 34678999999999999999988774 8999999999987 7777776554333333444433322 234456899999
Q ss_pred EcccccCCcChHHHHHHHHHHHHhcCCCCceEeec
Q 026036 153 ASDILLYVKQYSNLIKSLSVLLKSYKPKDSQVGHL 187 (244)
Q Consensus 153 ~~~~l~~~~~~~~l~~~l~~~~~~lk~gG~~~~~~ 187 (244)
++.++.+. .+....++.+.+.|+|||.+++..
T Consensus 127 ~~~~l~~~---~~~~~~l~~~~~~L~~gG~li~~~ 158 (239)
T PRK00216 127 IAFGLRNV---PDIDKALREMYRVLKPGGRLVILE 158 (239)
T ss_pred EecccccC---CCHHHHHHHHHHhccCCcEEEEEE
Confidence 98888333 345588999999999999988763
|
|
| >PF13649 Methyltransf_25: Methyltransferase domain; PDB: 3BXO_B 3GGD_A 3PX2_A 3PX3_A 3PFH_D 3PFG_A 1Y8C_A | Back alignment and domain information |
|---|
Probab=99.55 E-value=1.2e-14 Score=102.00 Aligned_cols=97 Identities=18% Similarity=0.303 Sum_probs=71.7
Q ss_pred EEEeCCCCcHHHHHHHHhC----CCeEEEEeCChHHHHHHHHHhHHhcCCCCCcceEeeecCCCCCCCCCCccEEEEccc
Q 026036 81 CIELGSGTGALAIFLRKAM----NLDITTSDYNDQEIEDNIAYNSTTNGITPALPHIKHSWGDAFPIPNPDWDLILASDI 156 (244)
Q Consensus 81 VLdlG~G~G~~~~~~a~~~----~~~v~~~D~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fD~I~~~~~ 156 (244)
|||+|||+|.....++... ..+++++|+|++|+ +.++++....+. .+..+..+..+ ++...++||+|+++..
T Consensus 1 ILDlgcG~G~~~~~l~~~~~~~~~~~~~gvD~s~~~l-~~~~~~~~~~~~--~~~~~~~D~~~-l~~~~~~~D~v~~~~~ 76 (101)
T PF13649_consen 1 ILDLGCGTGRVTRALARRFDAGPSSRVIGVDISPEML-ELAKKRFSEDGP--KVRFVQADARD-LPFSDGKFDLVVCSGL 76 (101)
T ss_dssp -EEET-TTSHHHHHHHHHS-----SEEEEEES-HHHH-HHHHHHSHHTTT--TSEEEESCTTC-HHHHSSSEEEEEE-TT
T ss_pred CEEeecCCcHHHHHHHHHhhhcccceEEEEECCHHHH-HHHHHhchhcCC--ceEEEECCHhH-CcccCCCeeEEEEcCC
Confidence 7999999999999998875 37999999999998 777777655444 34444444433 3445679999999655
Q ss_pred ccCCcChHHHHHHHHHHHHhcCCCC
Q 026036 157 LLYVKQYSNLIKSLSVLLKSYKPKD 181 (244)
Q Consensus 157 l~~~~~~~~l~~~l~~~~~~lk~gG 181 (244)
.+++...+++.+.++++.++++|||
T Consensus 77 ~~~~~~~~~~~~ll~~~~~~l~pgG 101 (101)
T PF13649_consen 77 SLHHLSPEELEALLRRIARLLRPGG 101 (101)
T ss_dssp GGGGSSHHHHHHHHHHHHHTEEEEE
T ss_pred ccCCCCHHHHHHHHHHHHHHhCCCC
Confidence 3366777889999999999999987
|
|
| >TIGR03534 RF_mod_PrmC protein-(glutamine-N5) methyltransferase, release factor-specific | Back alignment and domain information |
|---|
Probab=99.54 E-value=3.3e-13 Score=110.08 Aligned_cols=149 Identities=18% Similarity=0.277 Sum_probs=103.6
Q ss_pred ceeechHHHHHHHHhhccCcccCCeEEEeCCCCcHHHHHHHHhC-CCeEEEEeCChHHHHHHHHHhHHhcCCCCCcceEe
Q 026036 56 NFLWPGTFSFAEWLMHHREWIERRRCIELGSGTGALAIFLRKAM-NLDITTSDYNDQEIEDNIAYNSTTNGITPALPHIK 134 (244)
Q Consensus 56 ~~~w~~~~~l~~~~~~~~~~~~~~~VLdlG~G~G~~~~~~a~~~-~~~v~~~D~~~~~l~~~~~~~~~~~~~~~~~~~~~ 134 (244)
...+|.+..+.+.+..... ..+.+|||+|||+|.++..++... ..+++++|+++.++ +.++.++..+++. ++..+.
T Consensus 67 ~~p~~~~~~l~~~~l~~~~-~~~~~ilDig~G~G~~~~~l~~~~~~~~v~~iD~~~~~~-~~a~~~~~~~~~~-~~~~~~ 143 (251)
T TIGR03534 67 LIPRPDTEELVEAALERLK-KGPLRVLDLGTGSGAIALALAKERPDARVTAVDISPEAL-AVARKNAARLGLD-NVTFLQ 143 (251)
T ss_pred ccCCCChHHHHHHHHHhcc-cCCCeEEEEeCcHhHHHHHHHHHCCCCEEEEEECCHHHH-HHHHHHHHHcCCC-eEEEEE
Confidence 3456778888777766543 245699999999999999998875 56899999999987 8888888877663 233333
Q ss_pred eecCCCCCCCCCCccEEEEcccccCCcC-----------------------hHHHHHHHHHHHHhcCCCCceEeeccccc
Q 026036 135 HSWGDAFPIPNPDWDLILASDILLYVKQ-----------------------YSNLIKSLSVLLKSYKPKDSQVGHLTKNE 191 (244)
Q Consensus 135 ~~~~~~~~~~~~~fD~I~~~~~l~~~~~-----------------------~~~l~~~l~~~~~~lk~gG~~~~~~~~~~ 191 (244)
.++.+ ....++||+|+++.++..... .......++.+.+.|+|||.+++..
T Consensus 144 ~d~~~--~~~~~~fD~Vi~npPy~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~i~~~~~~L~~gG~~~~~~---- 217 (251)
T TIGR03534 144 SDWFE--PLPGGKFDLIVSNPPYIPEADIHLLDPEVRFHEPRLALFGGEDGLDFYRRIIAQAPRLLKPGGWLLLEI---- 217 (251)
T ss_pred Cchhc--cCcCCceeEEEECCCCCchhhhhhcChhhhhcCCHHHHcCCCcHHHHHHHHHHHHHHhcccCCEEEEEE----
Confidence 33333 233568999999877532110 0112367889999999999877641
Q ss_pred CCCCCCCCCCCeEEEeeeeccCccchhhHHHHHhhcCCeEEEe
Q 026036 192 QGEGTEGLPWPAFLMSWRRRIGKEDETIFFTSCENAGLEVKHL 234 (244)
Q Consensus 192 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gf~v~~~ 234 (244)
. . .....+.+.++++||+.+.+
T Consensus 218 -----------------~--~--~~~~~~~~~l~~~gf~~v~~ 239 (251)
T TIGR03534 218 -----------------G--Y--DQGEAVRALFEAAGFADVET 239 (251)
T ss_pred -----------------C--c--cHHHHHHHHHHhCCCCceEE
Confidence 0 0 11357788899999976554
|
Members of this protein family are HemK (PrmC), a protein once thought to be involved in heme biosynthesis but now recognized to be a protein-glutamine methyltransferase that modifies the peptide chain release factors. All members of the seed alignment are encoded next to the release factor 1 gene (prfA) and confirmed by phylogenetic analysis. SIMBAL analysis (manuscript in prep.) shows the motif [LIV]PRx[DE]TE (in Escherichia coli, IPRPDTE) confers specificity for the release factors rather than for ribosomal protein L3. |
| >PF08242 Methyltransf_12: Methyltransferase domain; InterPro: IPR013217 Methyl transfer from the ubiquitous donor S-adenosyl-L-methionine (SAM) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals | Back alignment and domain information |
|---|
Probab=99.54 E-value=1.5e-15 Score=106.26 Aligned_cols=97 Identities=20% Similarity=0.300 Sum_probs=58.9
Q ss_pred EEeCCCCcHHHHHHHHhC-CCeEEEEeCChHHHHHHHHHhHHhcCCCCCcceEeeecCCCCCCCC-CCccEEEEcccccC
Q 026036 82 IELGSGTGALAIFLRKAM-NLDITTSDYNDQEIEDNIAYNSTTNGITPALPHIKHSWGDAFPIPN-PDWDLILASDILLY 159 (244)
Q Consensus 82 LdlG~G~G~~~~~~a~~~-~~~v~~~D~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~fD~I~~~~~l~~ 159 (244)
||+|||+|.++..++... ..+++++|+|+.|+ +.++++...... .....+.+...+...... ++||+|+++.++++
T Consensus 1 LdiGcG~G~~~~~l~~~~~~~~~~~~D~s~~~l-~~a~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~fD~V~~~~vl~~ 78 (99)
T PF08242_consen 1 LDIGCGTGRLLRALLEELPDARYTGVDISPSML-ERARERLAELGN-DNFERLRFDVLDLFDYDPPESFDLVVASNVLHH 78 (99)
T ss_dssp -EESTTTS-TTTTHHHHC-EEEEEEEESSSSTT-STTCCCHHHCT----EEEEE--SSS---CCC----SEEEEE-TTS-
T ss_pred CEeCccChHHHHHHHHhCCCCEEEEEECCHHHH-HHHHHHhhhcCC-cceeEEEeecCChhhcccccccceehhhhhHhh
Confidence 799999999998887774 67899999999987 555555444332 112223333333322222 48999999999944
Q ss_pred CcChHHHHHHHHHHHHhcCCCCce
Q 026036 160 VKQYSNLIKSLSVLLKSYKPKDSQ 183 (244)
Q Consensus 160 ~~~~~~l~~~l~~~~~~lk~gG~~ 183 (244)
. +++...++.+.+.|||||++
T Consensus 79 l---~~~~~~l~~~~~~L~pgG~l 99 (99)
T PF08242_consen 79 L---EDIEAVLRNIYRLLKPGGIL 99 (99)
T ss_dssp ----S-HHHHHHHHTTT-TSS-EE
T ss_pred h---hhHHHHHHHHHHHcCCCCCC
Confidence 3 56669999999999999964
|
The reaction is catalyzed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. This entry represents a methyltransferase domain found in a large variety of SAM-dependent methyltransferases including, but not limited to: Hexaprenyldihydroxybenzoate methyltransferase (2.1.1.114 from EC), a mitochodrial enzyme involved in ubiquinone biosynthesis [] Fatty acid synthase (2.3.1.85 from EC), a biosynthetic enzyme catalysing the formation of long-chain fatty acids Glycine N-methyltransferase (2.1.1.20 from EC) which catalyses the SAM-dependent methylation of glycine to form sarcosine and may play a role in regulating the methylation potential of the cell [] Enniatin synthetase, involved in non-ribosomal biosynthesis of cyclohexadepsipeptidase, enniatin [] Histamine N-methyltransferase (2.1.1.8 from EC), a SAM-dependent histamine-inactivating enzyme [] A probable cobalt-precorrin-6Y C(15)-methyltransferase thought to be involved in adenosylcobalamin biosynthesis [] Structural studies show that this domain forms the Rossman-like alpha-beta fold typical of SAM-dependent methyltransferases [, , ].; PDB: 2VZ8_A 2VZ9_A. |
| >TIGR01983 UbiG ubiquinone biosynthesis O-methyltransferase | Back alignment and domain information |
|---|
Probab=99.54 E-value=1.6e-13 Score=110.21 Aligned_cols=156 Identities=16% Similarity=0.131 Sum_probs=98.4
Q ss_pred ccCCeEEEeCCCCcHHHHHHHHhCCCeEEEEeCChHHHHHHHHHhHHhcCCCCCcceEeeecCCCCCCCCCCccEEEEcc
Q 026036 76 IERRRCIELGSGTGALAIFLRKAMNLDITTSDYNDQEIEDNIAYNSTTNGITPALPHIKHSWGDAFPIPNPDWDLILASD 155 (244)
Q Consensus 76 ~~~~~VLdlG~G~G~~~~~~a~~~~~~v~~~D~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fD~I~~~~ 155 (244)
..+.+|||+|||+|.++..+++. +.+++++|+++.++ +.++++...++.. .+.....+..+......++||+|+++.
T Consensus 44 ~~~~~vLdlG~G~G~~~~~l~~~-~~~v~~iD~s~~~~-~~a~~~~~~~~~~-~~~~~~~d~~~~~~~~~~~~D~i~~~~ 120 (224)
T TIGR01983 44 LFGLRVLDVGCGGGLLSEPLARL-GANVTGIDASEENI-EVAKLHAKKDPLL-KIEYRCTSVEDLAEKGAKSFDVVTCME 120 (224)
T ss_pred CCCCeEEEECCCCCHHHHHHHhc-CCeEEEEeCCHHHH-HHHHHHHHHcCCC-ceEEEeCCHHHhhcCCCCCccEEEehh
Confidence 45789999999999999888765 56799999999987 7777776655441 122222222111111236899999999
Q ss_pred cccCCcChHHHHHHHHHHHHhcCCCCceEeecccccCCC-------CCCC-CCCCeEEEeeeeccCccchhhHHHHHhhc
Q 026036 156 ILLYVKQYSNLIKSLSVLLKSYKPKDSQVGHLTKNEQGE-------GTEG-LPWPAFLMSWRRRIGKEDETIFFTSCENA 227 (244)
Q Consensus 156 ~l~~~~~~~~l~~~l~~~~~~lk~gG~~~~~~~~~~~~~-------~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 227 (244)
++.+. .+....++.+.+.|+|||.+++......... ..+. ...+.- .....++. +..++.++++++
T Consensus 121 ~l~~~---~~~~~~l~~~~~~L~~gG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~--~~~~l~~~l~~~ 194 (224)
T TIGR01983 121 VLEHV---PDPQAFIRACAQLLKPGGILFFSTINRTPKSYLLAIVGAEYILRIVPKG-THDWEKFI--KPSELTSWLESA 194 (224)
T ss_pred HHHhC---CCHHHHHHHHHHhcCCCcEEEEEecCCCchHHHHHHHhhhhhhhcCCCC-cCChhhcC--CHHHHHHHHHHc
Confidence 98443 3444889999999999999887643221100 0000 000000 00011121 246788999999
Q ss_pred CCeEEEeccEEEE
Q 026036 228 GLEVKHLGSRVYC 240 (244)
Q Consensus 228 Gf~v~~~~~~~~~ 240 (244)
||+++++....|.
T Consensus 195 G~~i~~~~~~~~~ 207 (224)
T TIGR01983 195 GLRVKDVKGLVYN 207 (224)
T ss_pred CCeeeeeeeEEee
Confidence 9999988766543
|
This model represents an O-methyltransferase believed to act at two points in the ubiquinone biosynthetic pathway in bacteria (UbiG) and fungi (COQ3). A separate methylase (MenG/UbiE) catalyzes the single C-methylation step. The most commonly used names for genes in this family do not indicate whether this gene is an O-methyl, or C-methyl transferase. |
| >PLN02585 magnesium protoporphyrin IX methyltransferase | Back alignment and domain information |
|---|
Probab=99.53 E-value=1.3e-13 Score=115.22 Aligned_cols=148 Identities=16% Similarity=0.051 Sum_probs=87.9
Q ss_pred cCCeEEEeCCCCcHHHHHHHHhCCCeEEEEeCChHHHHHHHHHhHHhcCCCC-CcceEeeecCCCCCCCCCCccEEEEcc
Q 026036 77 ERRRCIELGSGTGALAIFLRKAMNLDITTSDYNDQEIEDNIAYNSTTNGITP-ALPHIKHSWGDAFPIPNPDWDLILASD 155 (244)
Q Consensus 77 ~~~~VLdlG~G~G~~~~~~a~~~~~~v~~~D~~~~~l~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~fD~I~~~~ 155 (244)
++.+|||+|||+|.+++.+++. +.+|+++|+|+.|+ +.++++........ ....+.+...+. ...+++||+|+|.+
T Consensus 144 ~~~~VLDlGcGtG~~a~~la~~-g~~V~gvD~S~~ml-~~A~~~~~~~~~~~~~~~~~~f~~~Dl-~~l~~~fD~Vv~~~ 220 (315)
T PLN02585 144 AGVTVCDAGCGTGSLAIPLALE-GAIVSASDISAAMV-AEAERRAKEALAALPPEVLPKFEANDL-ESLSGKYDTVTCLD 220 (315)
T ss_pred CCCEEEEecCCCCHHHHHHHHC-CCEEEEEECCHHHH-HHHHHHHHhcccccccccceEEEEcch-hhcCCCcCEEEEcC
Confidence 5789999999999999999876 67999999999998 77777765432100 001122222221 22256899999999
Q ss_pred cccCCcChHHHHHHHHHHHHhcCCCCceEeec-ccccC-----CCCCCCCCCCeEEEeeeeccCccchhhHHHHHhhcCC
Q 026036 156 ILLYVKQYSNLIKSLSVLLKSYKPKDSQVGHL-TKNEQ-----GEGTEGLPWPAFLMSWRRRIGKEDETIFFTSCENAGL 229 (244)
Q Consensus 156 ~l~~~~~~~~l~~~l~~~~~~lk~gG~~~~~~-~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gf 229 (244)
+++| ...+.....++.+.+. .+|| +++.. +.... .....+.... ...+.+. .+.+++.++++++||
T Consensus 221 vL~H-~p~~~~~~ll~~l~~l-~~g~-liIs~~p~~~~~~~l~~~g~~~~g~~----~~~r~y~-~s~eel~~lL~~AGf 292 (315)
T PLN02585 221 VLIH-YPQDKADGMIAHLASL-AEKR-LIISFAPKTLYYDILKRIGELFPGPS----KATRAYL-HAEADVERALKKAGW 292 (315)
T ss_pred EEEe-cCHHHHHHHHHHHHhh-cCCE-EEEEeCCcchHHHHHHHHHhhcCCCC----cCceeee-CCHHHHHHHHHHCCC
Confidence 9844 3334455667777654 4544 44432 11000 0001110000 0011111 135899999999999
Q ss_pred eEEEec
Q 026036 230 EVKHLG 235 (244)
Q Consensus 230 ~v~~~~ 235 (244)
+++...
T Consensus 293 ~v~~~~ 298 (315)
T PLN02585 293 KVARRE 298 (315)
T ss_pred EEEEEE
Confidence 988655
|
|
| >PRK13944 protein-L-isoaspartate O-methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.53 E-value=2.4e-13 Score=107.62 Aligned_cols=114 Identities=15% Similarity=0.085 Sum_probs=81.4
Q ss_pred HHHHHHHHhhccCcccCCeEEEeCCCCcHHHHHHHHhC--CCeEEEEeCChHHHHHHHHHhHHhcCCCCCcceEeeecCC
Q 026036 62 TFSFAEWLMHHREWIERRRCIELGSGTGALAIFLRKAM--NLDITTSDYNDQEIEDNIAYNSTTNGITPALPHIKHSWGD 139 (244)
Q Consensus 62 ~~~l~~~~~~~~~~~~~~~VLdlG~G~G~~~~~~a~~~--~~~v~~~D~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 139 (244)
+..+..++.+.....++.+|||+|||+|..+..+++.. ..+|+++|++++++ +.+++|...++...++..+..+..+
T Consensus 57 ~p~~~~~~~~~l~~~~~~~VLDiG~GsG~~~~~la~~~~~~g~V~~iD~~~~~~-~~a~~~l~~~~~~~~v~~~~~d~~~ 135 (205)
T PRK13944 57 APHMVAMMCELIEPRPGMKILEVGTGSGYQAAVCAEAIERRGKVYTVEIVKELA-IYAAQNIERLGYWGVVEVYHGDGKR 135 (205)
T ss_pred hHHHHHHHHHhcCCCCCCEEEEECcCccHHHHHHHHhcCCCCEEEEEeCCHHHH-HHHHHHHHHcCCCCcEEEEECCccc
Confidence 33445555555566678899999999999998888765 46899999999987 7788888777664334444333322
Q ss_pred CCCCCCCCccEEEEcccccCCcChHHHHHHHHHHHHhcCCCCceEee
Q 026036 140 AFPIPNPDWDLILASDILLYVKQYSNLIKSLSVLLKSYKPKDSQVGH 186 (244)
Q Consensus 140 ~~~~~~~~fD~I~~~~~l~~~~~~~~l~~~l~~~~~~lk~gG~~~~~ 186 (244)
..+ ...+||.|++..++ .+ .+ +++.+.|+|||++++.
T Consensus 136 ~~~-~~~~fD~Ii~~~~~-~~--~~------~~l~~~L~~gG~lvi~ 172 (205)
T PRK13944 136 GLE-KHAPFDAIIVTAAA-ST--IP------SALVRQLKDGGVLVIP 172 (205)
T ss_pred CCc-cCCCccEEEEccCc-ch--hh------HHHHHhcCcCcEEEEE
Confidence 222 24589999998776 21 22 3578899999998775
|
|
| >COG2263 Predicted RNA methylase [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=99.52 E-value=9.7e-13 Score=99.74 Aligned_cols=167 Identities=15% Similarity=0.106 Sum_probs=102.7
Q ss_pred eeecccCCceEEEEecccCCCCcceeechHHHHHHHHhhccCcccCCeEEEeCCCCcHHHHHHHHhCCCeEEEEeCChHH
Q 026036 33 ERPHQFPEMELVIREFAFHQLNANFLWPGTFSFAEWLMHHREWIERRRCIELGSGTGALAIFLRKAMNLDITTSDYNDQE 112 (244)
Q Consensus 33 ~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~l~~~~~~~~~~~~~~~VLdlG~G~G~~~~~~a~~~~~~v~~~D~~~~~ 112 (244)
+....++.....+.|+..... .+..+..... ......|++|+|+|||||.+++.++..+..+|+++|+++++
T Consensus 9 ~kl~~f~~p~~~LEQY~Tp~~-------~Aa~il~~a~-~~g~l~g~~V~DlG~GTG~La~ga~~lGa~~V~~vdiD~~a 80 (198)
T COG2263 9 EKLKGFPNPKLGLEQYRTPAP-------LAAYILWVAY-LRGDLEGKTVLDLGAGTGILAIGAALLGASRVLAVDIDPEA 80 (198)
T ss_pred hhhcCCCCCCccceecCCChH-------HHHHHHHHHH-HcCCcCCCEEEEcCCCcCHHHHHHHhcCCcEEEEEecCHHH
Confidence 334556667888888754322 2222222222 23456888999999999999999998888999999999999
Q ss_pred HHHHHHHhHHhcCCCCCcceEeeecCCCCCCCCCCccEEEEcccccCCcChHHHHHHHHHHHHhcCCCCceEeecccccC
Q 026036 113 IEDNIAYNSTTNGITPALPHIKHSWGDAFPIPNPDWDLILASDILLYVKQYSNLIKSLSVLLKSYKPKDSQVGHLTKNEQ 192 (244)
Q Consensus 113 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fD~I~~~~~l~~~~~~~~l~~~l~~~~~~lk~gG~~~~~~~~~~~ 192 (244)
+ +.++.|+.... ..+.++.. +. .....++|.+++|+++=......+ ...+....+.. ..+
T Consensus 81 ~-ei~r~N~~~l~--g~v~f~~~---dv-~~~~~~~dtvimNPPFG~~~rhaD-r~Fl~~Ale~s----~vV-------- 140 (198)
T COG2263 81 L-EIARANAEELL--GDVEFVVA---DV-SDFRGKFDTVIMNPPFGSQRRHAD-RPFLLKALEIS----DVV-------- 140 (198)
T ss_pred H-HHHHHHHHhhC--CceEEEEc---ch-hhcCCccceEEECCCCccccccCC-HHHHHHHHHhh----heE--------
Confidence 7 89999988732 23333332 22 223567999999998732222111 13333333332 111
Q ss_pred CCCCCCCCCCeEEEeeeeccCccchhhHHHHHhhcCCeEEEeccEEEEEec
Q 026036 193 GEGTEGLPWPAFLMSWRRRIGKEDETIFFTSCENAGLEVKHLGSRVYCIKL 243 (244)
Q Consensus 193 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gf~v~~~~~~~~~~~~ 243 (244)
+.-|+.. . .+...+..+..|+.+.+...-.+.|+.
T Consensus 141 ------------YsiH~a~--~--~~f~~~~~~~~G~~v~~~~~~~~~iP~ 175 (198)
T COG2263 141 ------------YSIHKAG--S--RDFVEKFAADLGGTVTHIERARFPIPR 175 (198)
T ss_pred ------------EEeeccc--c--HHHHHHHHHhcCCeEEEEEEEEEecCc
Confidence 1112111 2 234456688889998888766666653
|
|
| >TIGR00740 methyltransferase, putative | Back alignment and domain information |
|---|
Probab=99.52 E-value=1.9e-13 Score=110.83 Aligned_cols=106 Identities=12% Similarity=0.130 Sum_probs=80.1
Q ss_pred cCCeEEEeCCCCcHHHHHHHHhC---CCeEEEEeCChHHHHHHHHHhHHhcCCCCCcceEeeecCCCCCCCCCCccEEEE
Q 026036 77 ERRRCIELGSGTGALAIFLRKAM---NLDITTSDYNDQEIEDNIAYNSTTNGITPALPHIKHSWGDAFPIPNPDWDLILA 153 (244)
Q Consensus 77 ~~~~VLdlG~G~G~~~~~~a~~~---~~~v~~~D~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fD~I~~ 153 (244)
++.+|||+|||+|..+..+++.. +.+|+++|+|+.|+ +.++++........++..+..+. .....+.+|+|++
T Consensus 53 ~~~~iLDlGcG~G~~~~~l~~~~~~p~~~v~gvD~s~~ml-~~a~~~~~~~~~~~~v~~~~~d~---~~~~~~~~d~v~~ 128 (239)
T TIGR00740 53 PDSNVYDLGCSRGAATLSARRNINQPNVKIIGIDNSQPMV-ERCRQHIAAYHSEIPVEILCNDI---RHVEIKNASMVIL 128 (239)
T ss_pred CCCEEEEecCCCCHHHHHHHHhcCCCCCeEEEEeCCHHHH-HHHHHHHHhcCCCCCeEEEECCh---hhCCCCCCCEEee
Confidence 67799999999999999888753 67899999999997 78877766543322333333333 2222346899999
Q ss_pred cccccCCcChHHHHHHHHHHHHhcCCCCceEeec
Q 026036 154 SDILLYVKQYSNLIKSLSVLLKSYKPKDSQVGHL 187 (244)
Q Consensus 154 ~~~l~~~~~~~~l~~~l~~~~~~lk~gG~~~~~~ 187 (244)
+.++ ++....+..+.++++++.|||||.+++..
T Consensus 129 ~~~l-~~~~~~~~~~~l~~i~~~LkpgG~l~i~d 161 (239)
T TIGR00740 129 NFTL-QFLPPEDRIALLTKIYEGLNPNGVLVLSE 161 (239)
T ss_pred ecch-hhCCHHHHHHHHHHHHHhcCCCeEEEEee
Confidence 9988 55555567799999999999999998874
|
A simple BLAST search finds all members of this family and weaker hits to a large number of known and predicted methyltransferases. A single iteration with PSI-BLAST, keeping only clear members of the family, leads to a large number of highly significant hits to a set of known and predicted methyltransferases with a large repertoire of different specifities. This model is restricted to a subfamily found so far only in the Proteobacteria, sharing consistent length, full-length homology, and on average better than 35 % identity. It is reasonable to predict equivalent function within this subfamily. |
| >TIGR01177 conserved hypothetical protein TIGR01177 | Back alignment and domain information |
|---|
Probab=99.52 E-value=5.4e-13 Score=113.09 Aligned_cols=119 Identities=16% Similarity=0.083 Sum_probs=86.5
Q ss_pred HHHHHHHhhccCcccCCeEEEeCCCCcHHHHHHHHhCCCeEEEEeCChHHHHHHHHHhHHhcCCCCCcceEeeecCCCCC
Q 026036 63 FSFAEWLMHHREWIERRRCIELGSGTGALAIFLRKAMNLDITTSDYNDQEIEDNIAYNSTTNGITPALPHIKHSWGDAFP 142 (244)
Q Consensus 63 ~~l~~~~~~~~~~~~~~~VLdlG~G~G~~~~~~a~~~~~~v~~~D~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 142 (244)
..+++.+.......++.+|||+|||+|.+.+.++.. +.+++|+|+++.|+ ..++.|+...+... +..+..+.. .++
T Consensus 168 ~~la~~~~~l~~~~~g~~vLDp~cGtG~~lieaa~~-~~~v~g~Di~~~~~-~~a~~nl~~~g~~~-i~~~~~D~~-~l~ 243 (329)
T TIGR01177 168 PKLARAMVNLARVTEGDRVLDPFCGTGGFLIEAGLM-GAKVIGCDIDWKMV-AGARINLEHYGIED-FFVKRGDAT-KLP 243 (329)
T ss_pred HHHHHHHHHHhCCCCcCEEEECCCCCCHHHHHHHHh-CCeEEEEcCCHHHH-HHHHHHHHHhCCCC-CeEEecchh-cCC
Confidence 456666665556668889999999999999887654 78999999999997 78888888777643 333332322 234
Q ss_pred CCCCCccEEEEcccccCCc------Ch-HHHHHHHHHHHHhcCCCCceEee
Q 026036 143 IPNPDWDLILASDILLYVK------QY-SNLIKSLSVLLKSYKPKDSQVGH 186 (244)
Q Consensus 143 ~~~~~fD~I~~~~~l~~~~------~~-~~l~~~l~~~~~~lk~gG~~~~~ 186 (244)
..+++||+|+++.++ ... .. .-..+.++++.+.|||||++++.
T Consensus 244 ~~~~~~D~Iv~dPPy-g~~~~~~~~~~~~l~~~~l~~~~r~Lk~gG~lv~~ 293 (329)
T TIGR01177 244 LSSESVDAIATDPPY-GRSTTAAGDGLESLYERSLEEFHEVLKSEGWIVYA 293 (329)
T ss_pred cccCCCCEEEECCCC-cCcccccCCchHHHHHHHHHHHHHHccCCcEEEEE
Confidence 445789999998764 221 11 22468899999999999988775
|
This family is found exclusively in the Archaea. |
| >PRK06202 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=99.52 E-value=3.1e-13 Score=109.12 Aligned_cols=148 Identities=15% Similarity=0.109 Sum_probs=92.1
Q ss_pred ccCCeEEEeCCCCcHHHHHHHHh----C-CCeEEEEeCChHHHHHHHHHhHHhcCCCCCcceEeeecCCCCCCCCCCccE
Q 026036 76 IERRRCIELGSGTGALAIFLRKA----M-NLDITTSDYNDQEIEDNIAYNSTTNGITPALPHIKHSWGDAFPIPNPDWDL 150 (244)
Q Consensus 76 ~~~~~VLdlG~G~G~~~~~~a~~----~-~~~v~~~D~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fD~ 150 (244)
.++.+|||||||+|.++..++.. + +.+|+|+|++++|+ +.++++...+++ .....+ .+.++..+++||+
T Consensus 59 ~~~~~iLDlGcG~G~~~~~L~~~~~~~g~~~~v~gvD~s~~~l-~~a~~~~~~~~~----~~~~~~-~~~l~~~~~~fD~ 132 (232)
T PRK06202 59 DRPLTLLDIGCGGGDLAIDLARWARRDGLRLEVTAIDPDPRAV-AFARANPRRPGV----TFRQAV-SDELVAEGERFDV 132 (232)
T ss_pred CCCcEEEEeccCCCHHHHHHHHHHHhCCCCcEEEEEcCCHHHH-HHHHhccccCCC----eEEEEe-cccccccCCCccE
Confidence 45679999999999998887653 1 35899999999997 666665443333 222222 2334445678999
Q ss_pred EEEcccccCCcChHHHHHHHHHHHHhcCCCCceEeecccccCCC-------------CCCCCCCCeEEEeeeeccCccch
Q 026036 151 ILASDILLYVKQYSNLIKSLSVLLKSYKPKDSQVGHLTKNEQGE-------------GTEGLPWPAFLMSWRRRIGKEDE 217 (244)
Q Consensus 151 I~~~~~l~~~~~~~~l~~~l~~~~~~lk~gG~~~~~~~~~~~~~-------------~~~~~~~~~~~~~~~~~~~~~~~ 217 (244)
|+++.++ +|...+++.++++++.++++ |.+++......... ..+...+ -..+..+.+ +.
T Consensus 133 V~~~~~l-hh~~d~~~~~~l~~~~r~~~--~~~~i~dl~~~~~~~~~~~~~~~~~~~~~~~~~d--~~~s~~~~~---~~ 204 (232)
T PRK06202 133 VTSNHFL-HHLDDAEVVRLLADSAALAR--RLVLHNDLIRSRLAYALFWAGTRLLSRSSFVHTD--GLLSVRRSY---TP 204 (232)
T ss_pred EEECCee-ecCChHHHHHHHHHHHHhcC--eeEEEeccccCHHHHHHHHHHHHHhccCceeecc--chHHHHhhc---CH
Confidence 9999998 55555557789999999987 43343311111000 0000000 001111222 25
Q ss_pred hhHHHHHhhcCCeEEEeccEE
Q 026036 218 TIFFTSCENAGLEVKHLGSRV 238 (244)
Q Consensus 218 ~~~~~~l~~~Gf~v~~~~~~~ 238 (244)
+++.+++++ ||+++....-.
T Consensus 205 ~el~~ll~~-Gf~~~~~~~~~ 224 (232)
T PRK06202 205 AELAALAPQ-GWRVERQWPFR 224 (232)
T ss_pred HHHHHHhhC-CCeEEecccee
Confidence 788899999 99998876443
|
|
| >PRK07580 Mg-protoporphyrin IX methyl transferase; Validated | Back alignment and domain information |
|---|
Probab=99.52 E-value=3e-13 Score=108.99 Aligned_cols=151 Identities=17% Similarity=0.157 Sum_probs=92.8
Q ss_pred ccCCeEEEeCCCCcHHHHHHHHhCCCeEEEEeCChHHHHHHHHHhHHhcCCCCCcceEeeecCCCCCCCCCCccEEEEcc
Q 026036 76 IERRRCIELGSGTGALAIFLRKAMNLDITTSDYNDQEIEDNIAYNSTTNGITPALPHIKHSWGDAFPIPNPDWDLILASD 155 (244)
Q Consensus 76 ~~~~~VLdlG~G~G~~~~~~a~~~~~~v~~~D~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fD~I~~~~ 155 (244)
.++.+|||+|||+|.++..++.. +.+|+++|+++.++ +.++++....+...++.....+ ++..+++||+|++.+
T Consensus 62 ~~~~~vLDvGcG~G~~~~~l~~~-~~~v~~~D~s~~~i-~~a~~~~~~~~~~~~i~~~~~d----~~~~~~~fD~v~~~~ 135 (230)
T PRK07580 62 LTGLRILDAGCGVGSLSIPLARR-GAKVVASDISPQMV-EEARERAPEAGLAGNITFEVGD----LESLLGRFDTVVCLD 135 (230)
T ss_pred CCCCEEEEEeCCCCHHHHHHHHc-CCEEEEEECCHHHH-HHHHHHHHhcCCccCcEEEEcC----chhccCCcCEEEEcc
Confidence 46779999999999999999876 56799999999987 7777766555443333333332 333456899999999
Q ss_pred cccCCcChHHHHHHHHHHHHhcCCCCceEeecccccCCC--CCCCCCCCeEEEeeeeccCccchhhHHHHHhhcCCeEEE
Q 026036 156 ILLYVKQYSNLIKSLSVLLKSYKPKDSQVGHLTKNEQGE--GTEGLPWPAFLMSWRRRIGKEDETIFFTSCENAGLEVKH 233 (244)
Q Consensus 156 ~l~~~~~~~~l~~~l~~~~~~lk~gG~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gf~v~~ 233 (244)
++ ++...+.+...++.+.+.+++++. +.......... .......+. ..........+..++.++++++||++..
T Consensus 136 ~l-~~~~~~~~~~~l~~l~~~~~~~~~-i~~~~~~~~~~~~~~l~~~~~~--~~~~~~~~~~~~~~~~~~l~~~Gf~~~~ 211 (230)
T PRK07580 136 VL-IHYPQEDAARMLAHLASLTRGSLI-FTFAPYTPLLALLHWIGGLFPG--PSRTTRIYPHREKGIRRALAAAGFKVVR 211 (230)
T ss_pred hh-hcCCHHHHHHHHHHHHhhcCCeEE-EEECCccHHHHHHHHhccccCC--ccCCCCccccCHHHHHHHHHHCCCceEe
Confidence 98 444456677888888887654432 22211100000 000000000 0000111112357888999999999988
Q ss_pred ecc
Q 026036 234 LGS 236 (244)
Q Consensus 234 ~~~ 236 (244)
+..
T Consensus 212 ~~~ 214 (230)
T PRK07580 212 TER 214 (230)
T ss_pred eee
Confidence 754
|
|
| >TIGR01934 MenG_MenH_UbiE ubiquinone/menaquinone biosynthesis methyltransferases | Back alignment and domain information |
|---|
Probab=99.51 E-value=6.1e-13 Score=106.46 Aligned_cols=106 Identities=19% Similarity=0.258 Sum_probs=77.5
Q ss_pred cccCCeEEEeCCCCcHHHHHHHHhCC--CeEEEEeCChHHHHHHHHHhHHhcCCCCCcceEeeecCCCCCCCCCCccEEE
Q 026036 75 WIERRRCIELGSGTGALAIFLRKAMN--LDITTSDYNDQEIEDNIAYNSTTNGITPALPHIKHSWGDAFPIPNPDWDLIL 152 (244)
Q Consensus 75 ~~~~~~VLdlG~G~G~~~~~~a~~~~--~~v~~~D~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fD~I~ 152 (244)
..++.+|||+|||+|..+..+++... .+++++|+++.++ +.++.+.. ...++..+..+..+ .++..++||+|+
T Consensus 37 ~~~~~~vldiG~G~G~~~~~~~~~~~~~~~~~~iD~~~~~~-~~~~~~~~---~~~~i~~~~~d~~~-~~~~~~~~D~i~ 111 (223)
T TIGR01934 37 VFKGQKVLDVACGTGDLAIELAKSAPDRGKVTGVDFSSEML-EVAKKKSE---LPLNIEFIQADAEA-LPFEDNSFDAVT 111 (223)
T ss_pred cCCCCeEEEeCCCCChhHHHHHHhcCCCceEEEEECCHHHH-HHHHHHhc---cCCCceEEecchhc-CCCCCCcEEEEE
Confidence 34788999999999999999988775 5899999999876 66666543 11223333333322 234456899999
Q ss_pred EcccccCCcChHHHHHHHHHHHHhcCCCCceEeecc
Q 026036 153 ASDILLYVKQYSNLIKSLSVLLKSYKPKDSQVGHLT 188 (244)
Q Consensus 153 ~~~~l~~~~~~~~l~~~l~~~~~~lk~gG~~~~~~~ 188 (244)
++.++ ++ ..+....++++.+.|+|||++++...
T Consensus 112 ~~~~~-~~--~~~~~~~l~~~~~~L~~gG~l~~~~~ 144 (223)
T TIGR01934 112 IAFGL-RN--VTDIQKALREMYRVLKPGGRLVILEF 144 (223)
T ss_pred Eeeee-CC--cccHHHHHHHHHHHcCCCcEEEEEEe
Confidence 98887 33 33455899999999999999987643
|
Note that a number of non-orthologous genes which are members of pfam03737 have been erroneously annotated as MenG methyltransferases. |
| >PF03848 TehB: Tellurite resistance protein TehB; InterPro: IPR015985 Tellurite resistance protein TehB is part of a tellurite-reducing operon tehA and tehB | Back alignment and domain information |
|---|
Probab=99.50 E-value=1.4e-13 Score=106.55 Aligned_cols=107 Identities=16% Similarity=0.305 Sum_probs=76.7
Q ss_pred cccCCeEEEeCCCCcHHHHHHHHhCCCeEEEEeCChHHHHHHHHHhHHhcCCCCCcceEeeecCCCCCCCCCCccEEEEc
Q 026036 75 WIERRRCIELGSGTGALAIFLRKAMNLDITTSDYNDQEIEDNIAYNSTTNGITPALPHIKHSWGDAFPIPNPDWDLILAS 154 (244)
Q Consensus 75 ~~~~~~VLdlG~G~G~~~~~~a~~~~~~v~~~D~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fD~I~~~ 154 (244)
..++.++||||||.|..++++|++ |.+|+++|+|+.++ +.+++.+...+++ +.....+..+ ... .+.||+|++.
T Consensus 28 ~~~~g~~LDlgcG~GRNalyLA~~-G~~VtAvD~s~~al-~~l~~~a~~~~l~--i~~~~~Dl~~-~~~-~~~yD~I~st 101 (192)
T PF03848_consen 28 LLKPGKALDLGCGEGRNALYLASQ-GFDVTAVDISPVAL-EKLQRLAEEEGLD--IRTRVADLND-FDF-PEEYDFIVST 101 (192)
T ss_dssp TS-SSEEEEES-TTSHHHHHHHHT-T-EEEEEESSHHHH-HHHHHHHHHTT-T--EEEEE-BGCC-BS--TTTEEEEEEE
T ss_pred hcCCCcEEEcCCCCcHHHHHHHHC-CCeEEEEECCHHHH-HHHHHHHhhcCce--eEEEEecchh-ccc-cCCcCEEEEE
Confidence 346679999999999999999987 88999999999887 6676666666662 3333333322 222 3579999987
Q ss_pred ccccCCcChHHHHHHHHHHHHhcCCCCceEeecc
Q 026036 155 DILLYVKQYSNLIKSLSVLLKSYKPKDSQVGHLT 188 (244)
Q Consensus 155 ~~l~~~~~~~~l~~~l~~~~~~lk~gG~~~~~~~ 188 (244)
-++ .+...+...+.++.+...++|||.+++.+.
T Consensus 102 ~v~-~fL~~~~~~~i~~~m~~~~~pGG~~li~~~ 134 (192)
T PF03848_consen 102 VVF-MFLQRELRPQIIENMKAATKPGGYNLIVTF 134 (192)
T ss_dssp SSG-GGS-GGGHHHHHHHHHHTEEEEEEEEEEEE
T ss_pred EEe-ccCCHHHHHHHHHHHHhhcCCcEEEEEEEe
Confidence 666 556667777899999999999998877533
|
When present in high copy number, TehB is responsible for potassium tellurite resistance, probably by increasing the reduction rate of tellurite to metallic tellurium within the bacterium. TehB is a cytoplasmic protein which possesses three conserved motifs (I, II, and III) found in S-adenosyl-L-methionine (SAM)-dependent non-nucleic acid methyltransferases []. Conformational changes in TehB are observed upon binding of both tellurite and SAM, suggesting that TehB utilises a methyltransferase activity in the detoxification of tellurite. This entry represents the methyltransferase domain found in all TehB proteins.; PDB: 2KW5_A 3MER_B 3M70_A 2I6G_A 4DQ0_D 2XVA_B 2XVM_A. |
| >COG2242 CobL Precorrin-6B methylase 2 [Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=99.50 E-value=1.8e-12 Score=98.63 Aligned_cols=139 Identities=17% Similarity=0.174 Sum_probs=100.7
Q ss_pred HHHHHHHhhccCcccCCeEEEeCCCCcHHHHHHHHhC-CCeEEEEeCChHHHHHHHHHhHHhcCCCCCcceEeeecCCCC
Q 026036 63 FSFAEWLMHHREWIERRRCIELGSGTGALAIFLRKAM-NLDITTSDYNDQEIEDNIAYNSTTNGITPALPHIKHSWGDAF 141 (244)
Q Consensus 63 ~~l~~~~~~~~~~~~~~~VLdlG~G~G~~~~~~a~~~-~~~v~~~D~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 141 (244)
..+....+....+.+|.+++|+|||||.+++.++..+ ..+|+++|.+++++ +..++|++..+. .++..+.-+--+.+
T Consensus 20 ~EIRal~ls~L~~~~g~~l~DIGaGtGsi~iE~a~~~p~~~v~AIe~~~~a~-~~~~~N~~~fg~-~n~~vv~g~Ap~~L 97 (187)
T COG2242 20 EEIRALTLSKLRPRPGDRLWDIGAGTGSITIEWALAGPSGRVIAIERDEEAL-ELIERNAARFGV-DNLEVVEGDAPEAL 97 (187)
T ss_pred HHHHHHHHHhhCCCCCCEEEEeCCCccHHHHHHHHhCCCceEEEEecCHHHH-HHHHHHHHHhCC-CcEEEEeccchHhh
Confidence 3344444555677799999999999999999998555 78999999999987 899999998886 33334433332333
Q ss_pred CCCCCCccEEEEcccccCCcChHHHHHHHHHHHHhcCCCCceEeecccccCCCCCCCCCCCeEEEeeeeccCccchhhHH
Q 026036 142 PIPNPDWDLILASDILLYVKQYSNLIKSLSVLLKSYKPKDSQVGHLTKNEQGEGTEGLPWPAFLMSWRRRIGKEDETIFF 221 (244)
Q Consensus 142 ~~~~~~fD~I~~~~~l~~~~~~~~l~~~l~~~~~~lk~gG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 221 (244)
+..+ +||.|+.... ..+...++.+...|||||++++..... ++.....
T Consensus 98 ~~~~-~~daiFIGGg-------~~i~~ile~~~~~l~~ggrlV~naitl------------------------E~~~~a~ 145 (187)
T COG2242 98 PDLP-SPDAIFIGGG-------GNIEEILEAAWERLKPGGRLVANAITL------------------------ETLAKAL 145 (187)
T ss_pred cCCC-CCCEEEECCC-------CCHHHHHHHHHHHcCcCCeEEEEeecH------------------------HHHHHHH
Confidence 3322 7999998654 244588899999999999988762111 3346677
Q ss_pred HHHhhcCC-eEEEec
Q 026036 222 TSCENAGL-EVKHLG 235 (244)
Q Consensus 222 ~~l~~~Gf-~v~~~~ 235 (244)
+.+++.|+ ++.++.
T Consensus 146 ~~~~~~g~~ei~~v~ 160 (187)
T COG2242 146 EALEQLGGREIVQVQ 160 (187)
T ss_pred HHHHHcCCceEEEEE
Confidence 88999999 666553
|
|
| >PF06080 DUF938: Protein of unknown function (DUF938); InterPro: IPR010342 This family consists of several hypothetical proteins from both prokaryotes and eukaryotes | Back alignment and domain information |
|---|
Probab=99.49 E-value=5.1e-13 Score=103.57 Aligned_cols=153 Identities=20% Similarity=0.208 Sum_probs=108.4
Q ss_pred eEEEeCCCCcHHHHHHHHhC-CCeEEEEeCChHHHHHHHHHhHHhcCCCCCcceEeeecCCC-CCC------CCCCccEE
Q 026036 80 RCIELGSGTGALAIFLRKAM-NLDITTSDYNDQEIEDNIAYNSTTNGITPALPHIKHSWGDA-FPI------PNPDWDLI 151 (244)
Q Consensus 80 ~VLdlG~G~G~~~~~~a~~~-~~~v~~~D~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~------~~~~fD~I 151 (244)
+|||||||||..+.++|+.. ..+-.-+|.++..+ ..++..+...+.++....+.+|.... -+. ...+||.|
T Consensus 28 ~vLEiaSGtGqHa~~FA~~lP~l~WqPSD~~~~~~-~sI~a~~~~~~~~Nv~~P~~lDv~~~~w~~~~~~~~~~~~~D~i 106 (204)
T PF06080_consen 28 RVLEIASGTGQHAVYFAQALPHLTWQPSDPDDNLR-PSIRAWIAEAGLPNVRPPLALDVSAPPWPWELPAPLSPESFDAI 106 (204)
T ss_pred eEEEEcCCccHHHHHHHHHCCCCEEcCCCCChHHH-hhHHHHHHhcCCcccCCCeEeecCCCCCccccccccCCCCccee
Confidence 69999999999999999887 67788899998754 55555555555544444556655443 222 34589999
Q ss_pred EEcccccCCcChHHHHHHHHHHHHhcCCCCceEeecccccCCCCCCCCCCC----eEEEeeeeccCccchhhHHHHHhhc
Q 026036 152 LASDILLYVKQYSNLIKSLSVLLKSYKPKDSQVGHLTKNEQGEGTEGLPWP----AFLMSWRRRIGKEDETIFFTSCENA 227 (244)
Q Consensus 152 ~~~~~l~~~~~~~~l~~~l~~~~~~lk~gG~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~l~~~ 227 (244)
+|.+++ |..........++.+.+.|++||.+++ |+.-...+.+..... .++-...+.++..+.+++.+++.++
T Consensus 107 ~~~N~l-HI~p~~~~~~lf~~a~~~L~~gG~L~~--YGPF~~~G~~ts~SN~~FD~sLr~rdp~~GiRD~e~v~~lA~~~ 183 (204)
T PF06080_consen 107 FCINML-HISPWSAVEGLFAGAARLLKPGGLLFL--YGPFNRDGKFTSESNAAFDASLRSRDPEWGIRDIEDVEALAAAH 183 (204)
T ss_pred eehhHH-HhcCHHHHHHHHHHHHHhCCCCCEEEE--eCCcccCCEeCCcHHHHHHHHHhcCCCCcCccCHHHHHHHHHHC
Confidence 999999 778888888999999999999996554 444333333221111 1233334556777778899999999
Q ss_pred CCeEEEecc
Q 026036 228 GLEVKHLGS 236 (244)
Q Consensus 228 Gf~v~~~~~ 236 (244)
||+.+.+.+
T Consensus 184 GL~l~~~~~ 192 (204)
T PF06080_consen 184 GLELEEDID 192 (204)
T ss_pred CCccCcccc
Confidence 999877653
|
The function of this family is unknown. |
| >PLN02336 phosphoethanolamine N-methyltransferase | Back alignment and domain information |
|---|
Probab=99.48 E-value=6.2e-13 Score=118.28 Aligned_cols=146 Identities=14% Similarity=0.097 Sum_probs=94.0
Q ss_pred cCcccCCeEEEeCCCCcHHHHHHHHhCCCeEEEEeCChHHHHHHHHHhHHhcCCCCCcceEeeecCC-CCCCCCCCccEE
Q 026036 73 REWIERRRCIELGSGTGALAIFLRKAMNLDITTSDYNDQEIEDNIAYNSTTNGITPALPHIKHSWGD-AFPIPNPDWDLI 151 (244)
Q Consensus 73 ~~~~~~~~VLdlG~G~G~~~~~~a~~~~~~v~~~D~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~fD~I 151 (244)
....++.+|||||||+|.++..+++. ..+|+++|+++.++ +.++. .++...++..+..+..+ ..++++++||+|
T Consensus 33 l~~~~~~~vLDlGcG~G~~~~~la~~-~~~v~giD~s~~~l-~~a~~---~~~~~~~i~~~~~d~~~~~~~~~~~~fD~I 107 (475)
T PLN02336 33 LPPYEGKSVLELGAGIGRFTGELAKK-AGQVIALDFIESVI-KKNES---INGHYKNVKFMCADVTSPDLNISDGSVDLI 107 (475)
T ss_pred cCccCCCEEEEeCCCcCHHHHHHHhh-CCEEEEEeCCHHHH-HHHHH---HhccCCceEEEEecccccccCCCCCCEEEE
Confidence 33446779999999999999999876 67999999999987 33322 11221233444444432 245566789999
Q ss_pred EEcccccCCcChHHHHHHHHHHHHhcCCCCceEeecccccCCCCCCCCCCCeEEEeeeeccCccchhhHHHHHhhcCCeE
Q 026036 152 LASDILLYVKQYSNLIKSLSVLLKSYKPKDSQVGHLTKNEQGEGTEGLPWPAFLMSWRRRIGKEDETIFFTSCENAGLEV 231 (244)
Q Consensus 152 ~~~~~l~~~~~~~~l~~~l~~~~~~lk~gG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gf~v 231 (244)
+++.++ ++...+.+.+.++++.+.|||||.+++...............+|.. .. ....+.+++.++||..
T Consensus 108 ~~~~~l-~~l~~~~~~~~l~~~~r~Lk~gG~l~~~d~~~~~~~~~~~~~~~~~------~~---~~~~~~~~f~~~~~~~ 177 (475)
T PLN02336 108 FSNWLL-MYLSDKEVENLAERMVKWLKVGGYIFFRESCFHQSGDSKRKNNPTH------YR---EPRFYTKVFKECHTRD 177 (475)
T ss_pred ehhhhH-HhCCHHHHHHHHHHHHHhcCCCeEEEEEeccCCCCCcccccCCCCe------ec---ChHHHHHHHHHheecc
Confidence 999998 4444455779999999999999998876332211100000001110 01 1356777888888876
Q ss_pred EE
Q 026036 232 KH 233 (244)
Q Consensus 232 ~~ 233 (244)
+.
T Consensus 178 ~~ 179 (475)
T PLN02336 178 ED 179 (475)
T ss_pred CC
Confidence 53
|
|
| >COG4976 Predicted methyltransferase (contains TPR repeat) [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.48 E-value=4.7e-14 Score=109.45 Aligned_cols=141 Identities=19% Similarity=0.199 Sum_probs=95.7
Q ss_pred CCeEEEeCCCCcHHHHHHHHhCCCeEEEEeCChHHHHHHHHHhHHhcCCCCCcceEeeecCCCCC-CCCCCccEEEEccc
Q 026036 78 RRRCIELGSGTGALAIFLRKAMNLDITTSDYNDQEIEDNIAYNSTTNGITPALPHIKHSWGDAFP-IPNPDWDLILASDI 156 (244)
Q Consensus 78 ~~~VLdlG~G~G~~~~~~a~~~~~~v~~~D~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~fD~I~~~~~ 156 (244)
=.++||||||||+.+..+... ..+.+|+|+|++|+ +.+...-.-..+ .. -+....++ ....+||+|++.||
T Consensus 126 F~~~lDLGCGTGL~G~~lR~~-a~~ltGvDiS~nMl-~kA~eKg~YD~L----~~--Aea~~Fl~~~~~er~DLi~AaDV 197 (287)
T COG4976 126 FRRMLDLGCGTGLTGEALRDM-ADRLTGVDISENML-AKAHEKGLYDTL----YV--AEAVLFLEDLTQERFDLIVAADV 197 (287)
T ss_pred cceeeecccCcCcccHhHHHH-HhhccCCchhHHHH-HHHHhccchHHH----HH--HHHHHHhhhccCCcccchhhhhH
Confidence 469999999999999888554 77899999999998 444322111000 00 00001111 23458999999999
Q ss_pred ccCCcChHHHHHHHHHHHHhcCCCCceEeecccccCCCCCCCCCCCeEEEeeeeccCccchhhHHHHHhhcCCeEEEecc
Q 026036 157 LLYVKQYSNLIKSLSVLLKSYKPKDSQVGHLTKNEQGEGTEGLPWPAFLMSWRRRIGKEDETIFFTSCENAGLEVKHLGS 236 (244)
Q Consensus 157 l~~~~~~~~l~~~l~~~~~~lk~gG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gf~v~~~~~ 236 (244)
+-+ ..+|...+......|+|||.|++++.....+.+. .+....|+-. ........++..||++..+.+
T Consensus 198 l~Y---lG~Le~~~~~aa~~L~~gGlfaFSvE~l~~~~~f--------~l~ps~RyAH-~~~YVr~~l~~~Gl~~i~~~~ 265 (287)
T COG4976 198 LPY---LGALEGLFAGAAGLLAPGGLFAFSVETLPDDGGF--------VLGPSQRYAH-SESYVRALLAASGLEVIAIED 265 (287)
T ss_pred HHh---hcchhhHHHHHHHhcCCCceEEEEecccCCCCCe--------ecchhhhhcc-chHHHHHHHHhcCceEEEeec
Confidence 944 5667788889999999999999997777665331 2222223322 246778899999999998875
Q ss_pred EE
Q 026036 237 RV 238 (244)
Q Consensus 237 ~~ 238 (244)
..
T Consensus 266 tt 267 (287)
T COG4976 266 TT 267 (287)
T ss_pred cc
Confidence 43
|
|
| >PRK07402 precorrin-6B methylase; Provisional | Back alignment and domain information |
|---|
Probab=99.48 E-value=1.2e-12 Score=102.91 Aligned_cols=116 Identities=14% Similarity=0.146 Sum_probs=79.1
Q ss_pred HHHHHHHHhhccCcccCCeEEEeCCCCcHHHHHHHHhC-CCeEEEEeCChHHHHHHHHHhHHhcCCCCCcceEeeecCCC
Q 026036 62 TFSFAEWLMHHREWIERRRCIELGSGTGALAIFLRKAM-NLDITTSDYNDQEIEDNIAYNSTTNGITPALPHIKHSWGDA 140 (244)
Q Consensus 62 ~~~l~~~~~~~~~~~~~~~VLdlG~G~G~~~~~~a~~~-~~~v~~~D~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 140 (244)
...+...+.......++.+|||+|||+|.+++.+++.. +.+|+++|++++++ +.+++|+..++.. ++..+..+..+.
T Consensus 25 ~~~v~~~l~~~l~~~~~~~VLDiG~G~G~~~~~la~~~~~~~V~~vD~s~~~~-~~a~~n~~~~~~~-~v~~~~~d~~~~ 102 (196)
T PRK07402 25 KREVRLLLISQLRLEPDSVLWDIGAGTGTIPVEAGLLCPKGRVIAIERDEEVV-NLIRRNCDRFGVK-NVEVIEGSAPEC 102 (196)
T ss_pred HHHHHHHHHHhcCCCCCCEEEEeCCCCCHHHHHHHHHCCCCEEEEEeCCHHHH-HHHHHHHHHhCCC-CeEEEECchHHH
Confidence 33444444555555678899999999999999888654 57999999999987 8888888877662 333333222221
Q ss_pred CCCCCCCccEEEEcccccCCcChHHHHHHHHHHHHhcCCCCceEee
Q 026036 141 FPIPNPDWDLILASDILLYVKQYSNLIKSLSVLLKSYKPKDSQVGH 186 (244)
Q Consensus 141 ~~~~~~~fD~I~~~~~l~~~~~~~~l~~~l~~~~~~lk~gG~~~~~ 186 (244)
++.....+|.++... ...+.+.++++.+.|+|||++++.
T Consensus 103 ~~~~~~~~d~v~~~~-------~~~~~~~l~~~~~~LkpgG~li~~ 141 (196)
T PRK07402 103 LAQLAPAPDRVCIEG-------GRPIKEILQAVWQYLKPGGRLVAT 141 (196)
T ss_pred HhhCCCCCCEEEEEC-------CcCHHHHHHHHHHhcCCCeEEEEE
Confidence 222223467665421 123458899999999999998876
|
|
| >KOG4300 consensus Predicted methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.47 E-value=1.3e-13 Score=105.44 Aligned_cols=107 Identities=16% Similarity=0.186 Sum_probs=81.3
Q ss_pred CeEEEeCCCCcHHHHHHHHhCCCeEEEEeCChHHHHHHHHHhHHhcCCCCCcceEeeecCCCCC-CCCCCccEEEEcccc
Q 026036 79 RRCIELGSGTGALAIFLRKAMNLDITTSDYNDQEIEDNIAYNSTTNGITPALPHIKHSWGDAFP-IPNPDWDLILASDIL 157 (244)
Q Consensus 79 ~~VLdlG~G~G~~~~~~a~~~~~~v~~~D~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~fD~I~~~~~l 157 (244)
..|||+|||||..-.+.-......|+++|.++.|- +.+.+.+..+.- .++....+..++.++ ..++++|+|++..++
T Consensus 78 ~~vLEvgcGtG~Nfkfy~~~p~~svt~lDpn~~me-e~~~ks~~E~k~-~~~~~fvva~ge~l~~l~d~s~DtVV~TlvL 155 (252)
T KOG4300|consen 78 GDVLEVGCGTGANFKFYPWKPINSVTCLDPNEKME-EIADKSAAEKKP-LQVERFVVADGENLPQLADGSYDTVVCTLVL 155 (252)
T ss_pred cceEEecccCCCCcccccCCCCceEEEeCCcHHHH-HHHHHHHhhccC-cceEEEEeechhcCcccccCCeeeEEEEEEE
Confidence 36899999999877666444478999999999984 777777776632 344433444455555 567899999999999
Q ss_pred cCCcChHHHHHHHHHHHHhcCCCCceEeecccc
Q 026036 158 LYVKQYSNLIKSLSVLLKSYKPKDSQVGHLTKN 190 (244)
Q Consensus 158 ~~~~~~~~l~~~l~~~~~~lk~gG~~~~~~~~~ 190 (244)
.. .++..+.|+++.++|+|||++++.....
T Consensus 156 CS---ve~~~k~L~e~~rlLRpgG~iifiEHva 185 (252)
T KOG4300|consen 156 CS---VEDPVKQLNEVRRLLRPGGRIIFIEHVA 185 (252)
T ss_pred ec---cCCHHHHHHHHHHhcCCCcEEEEEeccc
Confidence 54 4556699999999999999999884433
|
|
| >TIGR03587 Pse_Me-ase pseudaminic acid biosynthesis-associated methylase | Back alignment and domain information |
|---|
Probab=99.47 E-value=3e-12 Score=101.15 Aligned_cols=99 Identities=18% Similarity=0.204 Sum_probs=73.0
Q ss_pred ccCCeEEEeCCCCcHHHHHHHHhC-CCeEEEEeCChHHHHHHHHHhHHhcCCCCCcceEeeecCCCCCCCCCCccEEEEc
Q 026036 76 IERRRCIELGSGTGALAIFLRKAM-NLDITTSDYNDQEIEDNIAYNSTTNGITPALPHIKHSWGDAFPIPNPDWDLILAS 154 (244)
Q Consensus 76 ~~~~~VLdlG~G~G~~~~~~a~~~-~~~v~~~D~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fD~I~~~ 154 (244)
.++.+|||+|||+|..+..++... +.+++|+|+|++++ +.++++.. . +..+..+..+ ++.+++||+|+++
T Consensus 42 ~~~~~VLDiGCG~G~~~~~L~~~~~~~~v~giDiS~~~l-~~A~~~~~--~----~~~~~~d~~~--~~~~~sfD~V~~~ 112 (204)
T TIGR03587 42 PKIASILELGANIGMNLAALKRLLPFKHIYGVEINEYAV-EKAKAYLP--N----INIIQGSLFD--PFKDNFFDLVLTK 112 (204)
T ss_pred CCCCcEEEEecCCCHHHHHHHHhCCCCeEEEEECCHHHH-HHHHhhCC--C----CcEEEeeccC--CCCCCCEEEEEEC
Confidence 366799999999999999988763 68999999999998 66665432 1 1233333323 4556799999999
Q ss_pred ccccCCcChHHHHHHHHHHHHhcCCCCceEee
Q 026036 155 DILLYVKQYSNLIKSLSVLLKSYKPKDSQVGH 186 (244)
Q Consensus 155 ~~l~~~~~~~~l~~~l~~~~~~lk~gG~~~~~ 186 (244)
.+++ |.....+.+.++++.+++ ++.+++.
T Consensus 113 ~vL~-hl~p~~~~~~l~el~r~~--~~~v~i~ 141 (204)
T TIGR03587 113 GVLI-HINPDNLPTAYRELYRCS--NRYILIA 141 (204)
T ss_pred Chhh-hCCHHHHHHHHHHHHhhc--CcEEEEE
Confidence 9994 445567889999999987 3555555
|
Members of this small clade are methyltransferases of the pfam08241 family and are observed within operons for the biosynthesis of pseudaminic acid, a component of exopolysaccharide and flagellin glycosyl modifications. Notable among these genomes is Pseudomonas fluorescens PfO-1. Possibly one of the two hydroxyl groups of pseudaminic acid, at positions 4 and 8 is converted to a methoxy group by this enzyme |
| >TIGR02072 BioC biotin biosynthesis protein BioC | Back alignment and domain information |
|---|
Probab=99.46 E-value=7.4e-13 Score=107.06 Aligned_cols=102 Identities=20% Similarity=0.262 Sum_probs=75.4
Q ss_pred cCCeEEEeCCCCcHHHHHHHHhC-CCeEEEEeCChHHHHHHHHHhHHhcCCCCCcceEeeecCCCCCCCCCCccEEEEcc
Q 026036 77 ERRRCIELGSGTGALAIFLRKAM-NLDITTSDYNDQEIEDNIAYNSTTNGITPALPHIKHSWGDAFPIPNPDWDLILASD 155 (244)
Q Consensus 77 ~~~~VLdlG~G~G~~~~~~a~~~-~~~v~~~D~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fD~I~~~~ 155 (244)
.+.+|||+|||+|..+..++..+ ..+++++|+++.++ ..++.+.. .++..+..+.. ..++.+++||+|+++.
T Consensus 34 ~~~~vLDlG~G~G~~~~~l~~~~~~~~~~~~D~~~~~~-~~~~~~~~-----~~~~~~~~d~~-~~~~~~~~fD~vi~~~ 106 (240)
T TIGR02072 34 IPASVLDIGCGTGYLTRALLKRFPQAEFIALDISAGML-AQAKTKLS-----ENVQFICGDAE-KLPLEDSSFDLIVSNL 106 (240)
T ss_pred CCCeEEEECCCccHHHHHHHHhCCCCcEEEEeChHHHH-HHHHHhcC-----CCCeEEecchh-hCCCCCCceeEEEEhh
Confidence 45799999999999999998876 46799999999886 55554432 12234444433 2344567899999999
Q ss_pred cccCCcChHHHHHHHHHHHHhcCCCCceEeecc
Q 026036 156 ILLYVKQYSNLIKSLSVLLKSYKPKDSQVGHLT 188 (244)
Q Consensus 156 ~l~~~~~~~~l~~~l~~~~~~lk~gG~~~~~~~ 188 (244)
++++. .+..+.+.++.+.|+|||.+++.+.
T Consensus 107 ~l~~~---~~~~~~l~~~~~~L~~~G~l~~~~~ 136 (240)
T TIGR02072 107 ALQWC---DDLSQALSELARVLKPGGLLAFSTF 136 (240)
T ss_pred hhhhc---cCHHHHHHHHHHHcCCCcEEEEEeC
Confidence 98433 3445899999999999999988743
|
This enzyme, which is found in biotin biosynthetic gene clusters in proteobacteria, firmicutes, green-sulfur bacteria, fusobacterium and bacteroides, is believed to carry out an enzymatic step prior to the formation of pimeloyl-CoA (although attribution of this annotation is not traceable). The enzyme appears related to methyltransferases by homology. |
| >TIGR03840 TMPT_Se_Te thiopurine S-methyltransferase, Se/Te detoxification family | Back alignment and domain information |
|---|
Probab=99.45 E-value=2.2e-12 Score=102.46 Aligned_cols=125 Identities=14% Similarity=0.042 Sum_probs=82.6
Q ss_pred HHHHHHHHhhccCcccCCeEEEeCCCCcHHHHHHHHhCCCeEEEEeCChHHHHHHHHHhHHhcCC------C-CCcceEe
Q 026036 62 TFSFAEWLMHHREWIERRRCIELGSGTGALAIFLRKAMNLDITTSDYNDQEIEDNIAYNSTTNGI------T-PALPHIK 134 (244)
Q Consensus 62 ~~~l~~~~~~~~~~~~~~~VLdlG~G~G~~~~~~a~~~~~~v~~~D~~~~~l~~~~~~~~~~~~~------~-~~~~~~~ 134 (244)
...+.+++.... ..++.+|||+|||.|..++.+|.+ +.+|+|+|+|+.++...++++...+.. . .+...+.
T Consensus 20 ~~~l~~~~~~l~-~~~~~rvLd~GCG~G~da~~LA~~-G~~V~gvD~S~~Ai~~~~~~~~~~~~~~~~~~~~~~~~~~v~ 97 (213)
T TIGR03840 20 NPLLVKHWPALG-LPAGARVFVPLCGKSLDLAWLAEQ-GHRVLGVELSEIAVEQFFAENGLTPTVTQQGEFTRYRAGNIE 97 (213)
T ss_pred CHHHHHHHHhhC-CCCCCeEEEeCCCchhHHHHHHhC-CCeEEEEeCCHHHHHHHHHHcCCCcceeccccceeeecCceE
Confidence 456666665432 136679999999999999999976 889999999999884322222111000 0 0011233
Q ss_pred eecCCCCCCC---CCCccEEEEcccccCCcChHHHHHHHHHHHHhcCCCCceEeeccc
Q 026036 135 HSWGDAFPIP---NPDWDLILASDILLYVKQYSNLIKSLSVLLKSYKPKDSQVGHLTK 189 (244)
Q Consensus 135 ~~~~~~~~~~---~~~fD~I~~~~~l~~~~~~~~l~~~l~~~~~~lk~gG~~~~~~~~ 189 (244)
+..+|..... .+.||.|+-..++ .+...+...+.++.+.++|||||++++.+..
T Consensus 98 ~~~~D~~~~~~~~~~~fD~i~D~~~~-~~l~~~~R~~~~~~l~~lLkpgG~~ll~~~~ 154 (213)
T TIGR03840 98 IFCGDFFALTAADLGPVDAVYDRAAL-IALPEEMRQRYAAHLLALLPPGARQLLITLD 154 (213)
T ss_pred EEEccCCCCCcccCCCcCEEEechhh-ccCCHHHHHHHHHHHHHHcCCCCeEEEEEEE
Confidence 3344443322 3579999988776 5666666778999999999999987776443
|
Members of this family are thiopurine S-methyltransferase from a branch in which at least some member proteins can perform selenium methylation as a means to detoxify selenium, or perform a related detoxification of tellurium. Note that the EC number definition does not specify a particular thiopurine, but rather represents a class of activity. |
| >PF05401 NodS: Nodulation protein S (NodS); InterPro: IPR008715 This entry consists of nodulation S (NodS) proteins | Back alignment and domain information |
|---|
Probab=99.45 E-value=3.9e-13 Score=103.06 Aligned_cols=103 Identities=21% Similarity=0.310 Sum_probs=75.3
Q ss_pred cCCeEEEeCCCCcHHHHHHHHhCCCeEEEEeCChHHHHHHHHHhHHhcCCCCCcceEeeecCCCCCCCCCCccEEEEccc
Q 026036 77 ERRRCIELGSGTGALAIFLRKAMNLDITTSDYNDQEIEDNIAYNSTTNGITPALPHIKHSWGDAFPIPNPDWDLILASDI 156 (244)
Q Consensus 77 ~~~~VLdlG~G~G~~~~~~a~~~~~~v~~~D~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fD~I~~~~~ 156 (244)
.-.++||+|||.|.++..+|.. +.+++++|+++.++ +.+++++.. . .++..+..+..+ ..+.++||+|+++.+
T Consensus 43 ry~~alEvGCs~G~lT~~LA~r-Cd~LlavDis~~Al-~~Ar~Rl~~--~-~~V~~~~~dvp~--~~P~~~FDLIV~SEV 115 (201)
T PF05401_consen 43 RYRRALEVGCSIGVLTERLAPR-CDRLLAVDISPRAL-ARARERLAG--L-PHVEWIQADVPE--FWPEGRFDLIVLSEV 115 (201)
T ss_dssp SEEEEEEE--TTSHHHHHHGGG-EEEEEEEES-HHHH-HHHHHHTTT----SSEEEEES-TTT-----SS-EEEEEEES-
T ss_pred ccceeEecCCCccHHHHHHHHh-hCceEEEeCCHHHH-HHHHHhcCC--C-CCeEEEECcCCC--CCCCCCeeEEEEehH
Confidence 3458999999999999999887 67899999999987 777665543 2 233444433322 235679999999999
Q ss_pred ccCCcChHHHHHHHHHHHHhcCCCCceEee
Q 026036 157 LLYVKQYSNLIKSLSVLLKSYKPKDSQVGH 186 (244)
Q Consensus 157 l~~~~~~~~l~~~l~~~~~~lk~gG~~~~~ 186 (244)
+|+....+++..++..+...|+|||.+++.
T Consensus 116 lYYL~~~~~L~~~l~~l~~~L~pgG~LV~g 145 (201)
T PF05401_consen 116 LYYLDDAEDLRAALDRLVAALAPGGHLVFG 145 (201)
T ss_dssp GGGSSSHHHHHHHHHHHHHTEEEEEEEEEE
T ss_pred hHcCCCHHHHHHHHHHHHHHhCCCCEEEEE
Confidence 999877788999999999999999998887
|
The products of the rhizobial nodulation genes are involved in the biosynthesis of lipochitin oligosaccharides (LCOs), which are host-specific signal molecules required for nodule formation. NodS is an S-adenosyl-L-methionine (SAM)-dependent methyltransferase involved in N methylation of LCOs. NodS uses N-deacetylated chitooligosaccharides, the products of the NodBC proteins, as its methyl acceptors [].; GO: 0008757 S-adenosylmethionine-dependent methyltransferase activity, 0009312 oligosaccharide biosynthetic process, 0009877 nodulation; PDB: 3OFK_D 3OFJ_A. |
| >TIGR00080 pimt protein-L-isoaspartate(D-aspartate) O-methyltransferase | Back alignment and domain information |
|---|
Probab=99.45 E-value=1.5e-12 Score=103.89 Aligned_cols=114 Identities=14% Similarity=0.106 Sum_probs=80.2
Q ss_pred HHHHHHHHhhccCcccCCeEEEeCCCCcHHHHHHHHhCC--CeEEEEeCChHHHHHHHHHhHHhcCCCCCcceEeeecCC
Q 026036 62 TFSFAEWLMHHREWIERRRCIELGSGTGALAIFLRKAMN--LDITTSDYNDQEIEDNIAYNSTTNGITPALPHIKHSWGD 139 (244)
Q Consensus 62 ~~~l~~~~~~~~~~~~~~~VLdlG~G~G~~~~~~a~~~~--~~v~~~D~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 139 (244)
...+...+.+.....++.+|||+|||+|..+..+++..+ .+|+++|++++++ +.+++|...+++ .++..+..+..+
T Consensus 62 ~p~~~~~~~~~l~~~~~~~VLDiG~GsG~~a~~la~~~~~~g~V~~vD~~~~~~-~~A~~~~~~~g~-~~v~~~~~d~~~ 139 (215)
T TIGR00080 62 APHMVAMMTELLELKPGMKVLEIGTGSGYQAAVLAEIVGRDGLVVSIERIPELA-EKAERRLRKLGL-DNVIVIVGDGTQ 139 (215)
T ss_pred hHHHHHHHHHHhCCCCcCEEEEECCCccHHHHHHHHHhCCCCEEEEEeCCHHHH-HHHHHHHHHCCC-CCeEEEECCccc
Confidence 344445555555667889999999999999999988753 4699999999987 888888887776 233333333322
Q ss_pred CCCCCCCCccEEEEcccccCCcChHHHHHHHHHHHHhcCCCCceEeec
Q 026036 140 AFPIPNPDWDLILASDILLYVKQYSNLIKSLSVLLKSYKPKDSQVGHL 187 (244)
Q Consensus 140 ~~~~~~~~fD~I~~~~~l~~~~~~~~l~~~l~~~~~~lk~gG~~~~~~ 187 (244)
.. ....+||+|++.... . .....+.+.|+|||++++.+
T Consensus 140 ~~-~~~~~fD~Ii~~~~~-~--------~~~~~~~~~L~~gG~lv~~~ 177 (215)
T TIGR00080 140 GW-EPLAPYDRIYVTAAG-P--------KIPEALIDQLKEGGILVMPV 177 (215)
T ss_pred CC-cccCCCCEEEEcCCc-c--------cccHHHHHhcCcCcEEEEEE
Confidence 21 123579999987654 1 12245778899999988763
|
Among the prokaryotes, the gene name is pcm. Among eukaryotes, pimt. |
| >PLN02672 methionine S-methyltransferase | Back alignment and domain information |
|---|
Probab=99.45 E-value=3.6e-12 Score=120.47 Aligned_cols=154 Identities=16% Similarity=0.164 Sum_probs=102.3
Q ss_pred ceeechHHHHHHHHhhccC-cccCCeEEEeCCCCcHHHHHHHHhC-CCeEEEEeCChHHHHHHHHHhHHhcCCC------
Q 026036 56 NFLWPGTFSFAEWLMHHRE-WIERRRCIELGSGTGALAIFLRKAM-NLDITTSDYNDQEIEDNIAYNSTTNGIT------ 127 (244)
Q Consensus 56 ~~~w~~~~~l~~~~~~~~~-~~~~~~VLdlG~G~G~~~~~~a~~~-~~~v~~~D~~~~~l~~~~~~~~~~~~~~------ 127 (244)
....|.++.+++.+...+. ..++.+|||||||+|.+++.++... ..+|+++|+|+.++ +.+++|+..|++.
T Consensus 96 LIPRpeTE~lve~L~~~~~~~~~~~~VLDlG~GSG~Iai~La~~~~~~~v~avDis~~Al-~~A~~Na~~n~l~~~~~~~ 174 (1082)
T PLN02672 96 FIPEDWSFTFYEGLNRHPDSIFRDKTVAELGCGNGWISIAIAEKWLPSKVYGLDINPRAV-KVAWINLYLNALDDDGLPV 174 (1082)
T ss_pred ccCchhHHHHHHHHHhcccccCCCCEEEEEecchHHHHHHHHHHCCCCEEEEEECCHHHH-HHHHHHHHHcCcccccccc
Confidence 4566778899988543322 2346799999999999999999876 47999999999997 8999999887542
Q ss_pred ---------CCcceEeeecCCCCCCCCCCccEEEEcccccCCcC-----------------------hHH----------
Q 026036 128 ---------PALPHIKHSWGDAFPIPNPDWDLILASDILLYVKQ-----------------------YSN---------- 165 (244)
Q Consensus 128 ---------~~~~~~~~~~~~~~~~~~~~fD~I~~~~~l~~~~~-----------------------~~~---------- 165 (244)
.++..+..++.+.......+||+||+|.+. -... ...
T Consensus 175 ~~~~~~~l~~rV~f~~sDl~~~~~~~~~~fDlIVSNPPY-I~~~e~~~l~~eV~~~ep~~~~~~~~p~~AL~g~~~g~dG 253 (1082)
T PLN02672 175 YDGEGKTLLDRVEFYESDLLGYCRDNNIELDRIVGCIPQ-ILNPNPEAMSKLVTENASEEFLYSLSNYCALQGFVEDQFG 253 (1082)
T ss_pred cccccccccccEEEEECchhhhccccCCceEEEEECCCc-CCCcchhhcChhhhhccccccccccCccccccCCCCCCcH
Confidence 133444444433332112369999998873 2110 011
Q ss_pred ---HHHHHHHHHHhcCCCCceEeecccccCCCCCCCCCCCeEEEeeeeccCccchhhHH-HHHhhcCCeEEEecc
Q 026036 166 ---LIKSLSVLLKSYKPKDSQVGHLTKNEQGEGTEGLPWPAFLMSWRRRIGKEDETIFF-TSCENAGLEVKHLGS 236 (244)
Q Consensus 166 ---l~~~l~~~~~~lk~gG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~l~~~Gf~v~~~~~ 236 (244)
..+.+.+..+.|+|||.+++-+ ..+ ..+... +++++.||+...+..
T Consensus 254 L~~yr~i~~~a~~~L~pgG~l~lEi---------------------G~~----q~~~v~~~l~~~~gf~~~~~~~ 303 (1082)
T PLN02672 254 LGLIARAVEEGISVIKPMGIMIFNM---------------------GGR----PGQAVCERLFERRGFRITKLWQ 303 (1082)
T ss_pred HHHHHHHHHHHHHhccCCCEEEEEE---------------------Ccc----HHHHHHHHHHHHCCCCeeEEee
Confidence 1456677778999999766531 111 124566 477788888766544
|
|
| >KOG1271 consensus Methyltransferases [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.45 E-value=1.3e-12 Score=97.98 Aligned_cols=145 Identities=19% Similarity=0.248 Sum_probs=101.5
Q ss_pred hHHHHHHHHhhccC---cccCC-eEEEeCCCCcHHHHHHHHhC-CCeEEEEeCChHHHHHHHHHhHHhcCCCCCcceEee
Q 026036 61 GTFSFAEWLMHHRE---WIERR-RCIELGSGTGALAIFLRKAM-NLDITTSDYNDQEIEDNIAYNSTTNGITPALPHIKH 135 (244)
Q Consensus 61 ~~~~l~~~~~~~~~---~~~~~-~VLdlG~G~G~~~~~~a~~~-~~~v~~~D~~~~~l~~~~~~~~~~~~~~~~~~~~~~ 135 (244)
+-.++.+|+..+.. +.+.+ +|||||||.|.+..-+++.+ ....+|+|+|+.++ +.++..++.++.++.+.+...
T Consensus 47 ae~riv~wl~d~~~~~rv~~~A~~VlDLGtGNG~~L~~L~~egf~~~L~GvDYs~~AV-~LA~niAe~~~~~n~I~f~q~ 125 (227)
T KOG1271|consen 47 AEERIVDWLKDLIVISRVSKQADRVLDLGTGNGHLLFQLAKEGFQSKLTGVDYSEKAV-ELAQNIAERDGFSNEIRFQQL 125 (227)
T ss_pred HHHHHHHHHHhhhhhhhhcccccceeeccCCchHHHHHHHHhcCCCCccccccCHHHH-HHHHHHHHhcCCCcceeEEEe
Confidence 35578888887654 33444 99999999999999998876 55699999999987 777666777777766666666
Q ss_pred ecCCCCCCCCCCccEEEEcccccCC------cChHHHHHHHHHHHHhcCCCCceEeecccccCCCCCCCCCCCeEEEeee
Q 026036 136 SWGDAFPIPNPDWDLILASDILLYV------KQYSNLIKSLSVLLKSYKPKDSQVGHLTKNEQGEGTEGLPWPAFLMSWR 209 (244)
Q Consensus 136 ~~~~~~~~~~~~fD~I~~~~~l~~~------~~~~~l~~~l~~~~~~lk~gG~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 209 (244)
+..++ .+..++||+|+--.++ .. .....+...+..+.++|+|||+|+|..
T Consensus 126 DI~~~-~~~~~qfdlvlDKGT~-DAisLs~d~~~~r~~~Y~d~v~~ll~~~gifvItS---------------------- 181 (227)
T KOG1271|consen 126 DITDP-DFLSGQFDLVLDKGTL-DAISLSPDGPVGRLVVYLDSVEKLLSPGGIFVITS---------------------- 181 (227)
T ss_pred eccCC-cccccceeEEeecCce-eeeecCCCCcccceeeehhhHhhccCCCcEEEEEe----------------------
Confidence 66555 5556788888764443 21 111223456677889999999888751
Q ss_pred eccCccchhhHHHHHhhcCCeEEE
Q 026036 210 RRIGKEDETIFFTSCENAGLEVKH 233 (244)
Q Consensus 210 ~~~~~~~~~~~~~~l~~~Gf~v~~ 233 (244)
..+. .+++.+..+..||++..
T Consensus 182 CN~T---~dELv~~f~~~~f~~~~ 202 (227)
T KOG1271|consen 182 CNFT---KDELVEEFENFNFEYLS 202 (227)
T ss_pred cCcc---HHHHHHHHhcCCeEEEE
Confidence 1222 36777777777887654
|
|
| >PRK06922 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=99.45 E-value=8.9e-13 Score=117.87 Aligned_cols=109 Identities=18% Similarity=0.232 Sum_probs=79.1
Q ss_pred cccCCeEEEeCCCCcHHHHHHHHhC-CCeEEEEeCChHHHHHHHHHhHHhcCCCCCcceEeeecCCCCC--CCCCCccEE
Q 026036 75 WIERRRCIELGSGTGALAIFLRKAM-NLDITTSDYNDQEIEDNIAYNSTTNGITPALPHIKHSWGDAFP--IPNPDWDLI 151 (244)
Q Consensus 75 ~~~~~~VLdlG~G~G~~~~~~a~~~-~~~v~~~D~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~fD~I 151 (244)
..++.+|||+|||+|..+..+++.. +.+|+|+|+|+.|+ +.++.+....+. ++..+..+..+ ++ +.+++||+|
T Consensus 416 ~~~g~rVLDIGCGTG~ls~~LA~~~P~~kVtGIDIS~~ML-e~Ararl~~~g~--~ie~I~gDa~d-Lp~~fedeSFDvV 491 (677)
T PRK06922 416 YIKGDTIVDVGAGGGVMLDMIEEETEDKRIYGIDISENVI-DTLKKKKQNEGR--SWNVIKGDAIN-LSSSFEKESVDTI 491 (677)
T ss_pred hcCCCEEEEeCCCCCHHHHHHHHhCCCCEEEEEECCHHHH-HHHHHHhhhcCC--CeEEEEcchHh-CccccCCCCEEEE
Confidence 3467899999999999988887765 67999999999998 677666544332 12222222222 23 456789999
Q ss_pred EEcccccCCc----------ChHHHHHHHHHHHHhcCCCCceEeec
Q 026036 152 LASDILLYVK----------QYSNLIKSLSVLLKSYKPKDSQVGHL 187 (244)
Q Consensus 152 ~~~~~l~~~~----------~~~~l~~~l~~~~~~lk~gG~~~~~~ 187 (244)
+++.++++.. ....+.+.+++++++|||||++++..
T Consensus 492 Vsn~vLH~L~syIp~~g~~f~~edl~kiLreI~RVLKPGGrLII~D 537 (677)
T PRK06922 492 VYSSILHELFSYIEYEGKKFNHEVIKKGLQSAYEVLKPGGRIIIRD 537 (677)
T ss_pred EEchHHHhhhhhcccccccccHHHHHHHHHHHHHHcCCCcEEEEEe
Confidence 9988873221 23567799999999999999999873
|
|
| >PRK13168 rumA 23S rRNA m(5)U1939 methyltransferase; Reviewed | Back alignment and domain information |
|---|
Probab=99.45 E-value=2.5e-12 Score=113.25 Aligned_cols=116 Identities=14% Similarity=0.166 Sum_probs=83.3
Q ss_pred hHHHHHHHHhhccCcccCCeEEEeCCCCcHHHHHHHHhCCCeEEEEeCChHHHHHHHHHhHHhcCCCCCcceEeeecCCC
Q 026036 61 GTFSFAEWLMHHREWIERRRCIELGSGTGALAIFLRKAMNLDITTSDYNDQEIEDNIAYNSTTNGITPALPHIKHSWGDA 140 (244)
Q Consensus 61 ~~~~l~~~~~~~~~~~~~~~VLdlG~G~G~~~~~~a~~~~~~v~~~D~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 140 (244)
.+..+.+.+.+.....++.+|||+|||+|.+++.++.. ..+|+++|+|++|+ +.+++|+..+++. ++..+..++.+.
T Consensus 281 ~~e~l~~~vl~~l~~~~~~~VLDlgcGtG~~sl~la~~-~~~V~gvD~s~~al-~~A~~n~~~~~~~-~v~~~~~d~~~~ 357 (443)
T PRK13168 281 VNQKMVARALEWLDPQPGDRVLDLFCGLGNFTLPLARQ-AAEVVGVEGVEAMV-ERARENARRNGLD-NVTFYHANLEED 357 (443)
T ss_pred HHHHHHHHHHHHhcCCCCCEEEEEeccCCHHHHHHHHh-CCEEEEEeCCHHHH-HHHHHHHHHcCCC-ceEEEEeChHHh
Confidence 35677777777666667889999999999999999877 57999999999998 8889999888773 344555454332
Q ss_pred C---CCCCCCccEEEEcccccCCcChHHHHHHHHHHHHhcCCCCceEee
Q 026036 141 F---PIPNPDWDLILASDILLYVKQYSNLIKSLSVLLKSYKPKDSQVGH 186 (244)
Q Consensus 141 ~---~~~~~~fD~I~~~~~l~~~~~~~~l~~~l~~~~~~lk~gG~~~~~ 186 (244)
+ ++.+.+||+|+++.+- .. .. +.++.+.+ ++|++.++++
T Consensus 358 l~~~~~~~~~fD~Vi~dPPr-~g--~~---~~~~~l~~-~~~~~ivyvS 399 (443)
T PRK13168 358 FTDQPWALGGFDKVLLDPPR-AG--AA---EVMQALAK-LGPKRIVYVS 399 (443)
T ss_pred hhhhhhhcCCCCEEEECcCC-cC--hH---HHHHHHHh-cCCCeEEEEE
Confidence 2 1234579999986663 32 22 45555555 5788766665
|
|
| >PRK13942 protein-L-isoaspartate O-methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.44 E-value=2.3e-12 Score=102.57 Aligned_cols=112 Identities=14% Similarity=0.130 Sum_probs=80.2
Q ss_pred hHHHHHHHHhhccCcccCCeEEEeCCCCcHHHHHHHHhC--CCeEEEEeCChHHHHHHHHHhHHhcCCCCCcceEeeecC
Q 026036 61 GTFSFAEWLMHHREWIERRRCIELGSGTGALAIFLRKAM--NLDITTSDYNDQEIEDNIAYNSTTNGITPALPHIKHSWG 138 (244)
Q Consensus 61 ~~~~l~~~~~~~~~~~~~~~VLdlG~G~G~~~~~~a~~~--~~~v~~~D~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 138 (244)
++..+..++.+.....++.+|||+|||+|..+..+++.. ..+|+++|++++++ +.++++....+.. + +.+..+
T Consensus 60 ~~p~~~~~~~~~l~~~~g~~VLdIG~GsG~~t~~la~~~~~~~~V~~vE~~~~~~-~~a~~~l~~~g~~-~---v~~~~g 134 (212)
T PRK13942 60 SAIHMVAIMCELLDLKEGMKVLEIGTGSGYHAAVVAEIVGKSGKVVTIERIPELA-EKAKKTLKKLGYD-N---VEVIVG 134 (212)
T ss_pred CcHHHHHHHHHHcCCCCcCEEEEECCcccHHHHHHHHhcCCCCEEEEEeCCHHHH-HHHHHHHHHcCCC-C---eEEEEC
Confidence 444555556666666789999999999999998888765 36899999999987 8888888776652 2 334344
Q ss_pred CCC--CCCCCCccEEEEcccccCCcChHHHHHHHHHHHHhcCCCCceEee
Q 026036 139 DAF--PIPNPDWDLILASDILLYVKQYSNLIKSLSVLLKSYKPKDSQVGH 186 (244)
Q Consensus 139 ~~~--~~~~~~fD~I~~~~~l~~~~~~~~l~~~l~~~~~~lk~gG~~~~~ 186 (244)
+.. .....+||+|++...+ . .. .+.+.+.|||||++++.
T Consensus 135 d~~~~~~~~~~fD~I~~~~~~-~--~~------~~~l~~~LkpgG~lvi~ 175 (212)
T PRK13942 135 DGTLGYEENAPYDRIYVTAAG-P--DI------PKPLIEQLKDGGIMVIP 175 (212)
T ss_pred CcccCCCcCCCcCEEEECCCc-c--cc------hHHHHHhhCCCcEEEEE
Confidence 432 1234689999987654 1 12 23567789999998875
|
|
| >smart00138 MeTrc Methyltransferase, chemotaxis proteins | Back alignment and domain information |
|---|
Probab=99.44 E-value=9.2e-13 Score=108.14 Aligned_cols=108 Identities=20% Similarity=0.315 Sum_probs=73.1
Q ss_pred cCCeEEEeCCCCcH----HHHHHHHhC------CCeEEEEeCChHHHHHHHHHhHH----hcCCC---------------
Q 026036 77 ERRRCIELGSGTGA----LAIFLRKAM------NLDITTSDYNDQEIEDNIAYNST----TNGIT--------------- 127 (244)
Q Consensus 77 ~~~~VLdlG~G~G~----~~~~~a~~~------~~~v~~~D~~~~~l~~~~~~~~~----~~~~~--------------- 127 (244)
++.+|||+|||||. +++.+++.. ..+|+|+|+|+.|+ +.+++.+. ..+++
T Consensus 99 ~~~ri~d~GCgtGee~YslA~~l~e~~~~~~~~~~~I~g~Dis~~~L-~~Ar~~~y~~~~~~~~~~~~~~~yf~~~~~~~ 177 (264)
T smart00138 99 RRVRIWSAGCSTGEEPYSLAMLLAETLPKAREPDVKILATDIDLKAL-EKARAGIYPERELEDLPKALLARYFSRVEDKY 177 (264)
T ss_pred CCEEEEeccccCChHHHHHHHHHHHHhhhcCCCCeEEEEEECCHHHH-HHHHcCCCCHHHHhcCCHHHHhhhEEeCCCeE
Confidence 45799999999996 455555443 35899999999998 66665321 01111
Q ss_pred ---CCc-ceEeeecCCCC--CCCCCCccEEEEcccccCCcChHHHHHHHHHHHHhcCCCCceEee
Q 026036 128 ---PAL-PHIKHSWGDAF--PIPNPDWDLILASDILLYVKQYSNLIKSLSVLLKSYKPKDSQVGH 186 (244)
Q Consensus 128 ---~~~-~~~~~~~~~~~--~~~~~~fD~I~~~~~l~~~~~~~~l~~~l~~~~~~lk~gG~~~~~ 186 (244)
..+ ..+.+...+.. +.+.++||+|+|.+++ ++...+...++++++++.|+|||.+++.
T Consensus 178 ~v~~~ir~~V~F~~~dl~~~~~~~~~fD~I~crnvl-~yf~~~~~~~~l~~l~~~L~pGG~L~lg 241 (264)
T smart00138 178 RVKPELKERVRFAKHNLLAESPPLGDFDLIFCRNVL-IYFDEPTQRKLLNRFAEALKPGGYLFLG 241 (264)
T ss_pred EEChHHhCcCEEeeccCCCCCCccCCCCEEEechhH-HhCCHHHHHHHHHHHHHHhCCCeEEEEE
Confidence 000 12233333332 2235689999999998 4445566779999999999999998886
|
Methylates methyl-accepting chemotaxis proteins to form gamma-glutamyl methyl ester residues. |
| >PRK05785 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=99.42 E-value=1.3e-12 Score=104.92 Aligned_cols=90 Identities=16% Similarity=0.363 Sum_probs=69.4
Q ss_pred cCCeEEEeCCCCcHHHHHHHHhCCCeEEEEeCChHHHHHHHHHhHHhcCCCCCcceEeeecCCCCCCCCCCccEEEEccc
Q 026036 77 ERRRCIELGSGTGALAIFLRKAMNLDITTSDYNDQEIEDNIAYNSTTNGITPALPHIKHSWGDAFPIPNPDWDLILASDI 156 (244)
Q Consensus 77 ~~~~VLdlG~G~G~~~~~~a~~~~~~v~~~D~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fD~I~~~~~ 156 (244)
++.+|||||||||.++..+++..+.+|+|+|+|++|+ +.++... ..+..+. +.+++.+++||+|+++.+
T Consensus 51 ~~~~VLDlGcGtG~~~~~l~~~~~~~v~gvD~S~~Ml-~~a~~~~---------~~~~~d~-~~lp~~d~sfD~v~~~~~ 119 (226)
T PRK05785 51 RPKKVLDVAAGKGELSYHFKKVFKYYVVALDYAENML-KMNLVAD---------DKVVGSF-EALPFRDKSFDVVMSSFA 119 (226)
T ss_pred CCCeEEEEcCCCCHHHHHHHHhcCCEEEEECCCHHHH-HHHHhcc---------ceEEech-hhCCCCCCCEEEEEecCh
Confidence 3679999999999999999877567999999999998 5554321 1222222 446777889999999999
Q ss_pred ccCCcChHHHHHHHHHHHHhcCCC
Q 026036 157 LLYVKQYSNLIKSLSVLLKSYKPK 180 (244)
Q Consensus 157 l~~~~~~~~l~~~l~~~~~~lk~g 180 (244)
+.+ .++..+.+++++|+|||.
T Consensus 120 l~~---~~d~~~~l~e~~RvLkp~ 140 (226)
T PRK05785 120 LHA---SDNIEKVIAEFTRVSRKQ 140 (226)
T ss_pred hhc---cCCHHHHHHHHHHHhcCc
Confidence 833 345669999999999994
|
|
| >PRK11783 rlmL 23S rRNA m(2)G2445 methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.42 E-value=2.5e-12 Score=118.85 Aligned_cols=134 Identities=13% Similarity=0.085 Sum_probs=94.8
Q ss_pred cCCeEEEeCCCCcHHHHHHHHhCCCeEEEEeCChHHHHHHHHHhHHhcCCC-CCcceEeeecCCCCCCCCCCccEEEEcc
Q 026036 77 ERRRCIELGSGTGALAIFLRKAMNLDITTSDYNDQEIEDNIAYNSTTNGIT-PALPHIKHSWGDAFPIPNPDWDLILASD 155 (244)
Q Consensus 77 ~~~~VLdlG~G~G~~~~~~a~~~~~~v~~~D~~~~~l~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~fD~I~~~~ 155 (244)
++++|||+|||+|.+++.++..+..+|+++|+|+.++ +.+++|+..|++. .++..+..+..+.+....++||+|++..
T Consensus 538 ~g~rVLDlf~gtG~~sl~aa~~Ga~~V~~vD~s~~al-~~a~~N~~~ng~~~~~v~~i~~D~~~~l~~~~~~fDlIilDP 616 (702)
T PRK11783 538 KGKDFLNLFAYTGTASVHAALGGAKSTTTVDMSNTYL-EWAERNFALNGLSGRQHRLIQADCLAWLKEAREQFDLIFIDP 616 (702)
T ss_pred CCCeEEEcCCCCCHHHHHHHHCCCCEEEEEeCCHHHH-HHHHHHHHHhCCCccceEEEEccHHHHHHHcCCCcCEEEECC
Confidence 5789999999999999999987566799999999997 8999999999885 3455554443322221245899999987
Q ss_pred cccCCcC--------hHHHHHHHHHHHHhcCCCCceEeecccccCCCCCCCCCCCeEEEeeeeccCccchhhHHHHHhhc
Q 026036 156 ILLYVKQ--------YSNLIKSLSVLLKSYKPKDSQVGHLTKNEQGEGTEGLPWPAFLMSWRRRIGKEDETIFFTSCENA 227 (244)
Q Consensus 156 ~l~~~~~--------~~~l~~~l~~~~~~lk~gG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 227 (244)
+.+.... .....+.+..+.++|+|||.+++.. ..... ..-.+.+.++
T Consensus 617 P~f~~~~~~~~~~~~~~~y~~l~~~a~~lL~~gG~l~~~~---------------------~~~~~----~~~~~~~~~~ 671 (702)
T PRK11783 617 PTFSNSKRMEDSFDVQRDHVALIKDAKRLLRPGGTLYFSN---------------------NKRGF----KMDEEGLAKL 671 (702)
T ss_pred CCCCCCCccchhhhHHHHHHHHHHHHHHHcCCCCEEEEEe---------------------CCccC----ChhHHHHHhC
Confidence 7533211 2234567788899999999876641 11111 1225677888
Q ss_pred CCeEEEecc
Q 026036 228 GLEVKHLGS 236 (244)
Q Consensus 228 Gf~v~~~~~ 236 (244)
|+++..+..
T Consensus 672 g~~~~~i~~ 680 (702)
T PRK11783 672 GLKAEEITA 680 (702)
T ss_pred CCeEEEEec
Confidence 998887763
|
|
| >PHA03411 putative methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.41 E-value=7.2e-12 Score=101.62 Aligned_cols=145 Identities=14% Similarity=0.122 Sum_probs=91.9
Q ss_pred cceeechHHHHHHHHhhccCcccCCeEEEeCCCCcHHHHHHHHhC-CCeEEEEeCChHHHHHHHHHhHHhcCCCCCcceE
Q 026036 55 ANFLWPGTFSFAEWLMHHREWIERRRCIELGSGTGALAIFLRKAM-NLDITTSDYNDQEIEDNIAYNSTTNGITPALPHI 133 (244)
Q Consensus 55 ~~~~w~~~~~l~~~~~~~~~~~~~~~VLdlG~G~G~~~~~~a~~~-~~~v~~~D~~~~~l~~~~~~~~~~~~~~~~~~~~ 133 (244)
|.++=|.+.. ..++.. ...+.+|||+|||+|.+++.++... +.+|+++|+++.++ +.++++.. ++..+
T Consensus 46 G~FfTP~~i~-~~f~~~---~~~~grVLDLGcGsGilsl~la~r~~~~~V~gVDisp~al-~~Ar~n~~------~v~~v 114 (279)
T PHA03411 46 GAFFTPEGLA-WDFTID---AHCTGKVLDLCAGIGRLSFCMLHRCKPEKIVCVELNPEFA-RIGKRLLP------EAEWI 114 (279)
T ss_pred eeEcCCHHHH-HHHHhc---cccCCeEEEcCCCCCHHHHHHHHhCCCCEEEEEECCHHHH-HHHHHhCc------CCEEE
Confidence 4455555553 234332 2245699999999999998887765 57999999999987 66666531 11222
Q ss_pred eeecCCCCCCC-CCCccEEEEcccccCCcChHH------------------HHHHHHHHHHhcCCCCceEeecccccCCC
Q 026036 134 KHSWGDAFPIP-NPDWDLILASDILLYVKQYSN------------------LIKSLSVLLKSYKPKDSQVGHLTKNEQGE 194 (244)
Q Consensus 134 ~~~~~~~~~~~-~~~fD~I~~~~~l~~~~~~~~------------------l~~~l~~~~~~lk~gG~~~~~~~~~~~~~ 194 (244)
.++..... ..+||+|++++++++ ....+ +.+.+......|+|+|.+.+..
T Consensus 115 ---~~D~~e~~~~~kFDlIIsNPPF~~-l~~~d~~~~~~~~GG~~g~~~l~~~~~l~~v~~~L~p~G~~~~~y------- 183 (279)
T PHA03411 115 ---TSDVFEFESNEKFDVVISNPPFGK-INTTDTKDVFEYTGGEFEFKVMTLGQKFADVGYFIVPTGSAGFAY------- 183 (279)
T ss_pred ---ECchhhhcccCCCcEEEEcCCccc-cCchhhhhhhhhccCccccccccHHHHHhhhHheecCCceEEEEE-------
Confidence 23333222 357999999999854 22211 2456666678888988766541
Q ss_pred CCCCCCCCeEEEeeeeccCccchhhHHHHHhhcCCeEE
Q 026036 195 GTEGLPWPAFLMSWRRRIGKEDETIFFTSCENAGLEVK 232 (244)
Q Consensus 195 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gf~v~ 232 (244)
...|. .+.+.+..++.++++++||+..
T Consensus 184 ----ss~~~-------y~~sl~~~~y~~~l~~~g~~~~ 210 (279)
T PHA03411 184 ----SGRPY-------YDGTMKSNKYLKWSKQTGLVTY 210 (279)
T ss_pred ----ecccc-------ccccCCHHHHHHHHHhcCcEec
Confidence 11111 1222345899999999999865
|
|
| >KOG2904 consensus Predicted methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.40 E-value=7e-12 Score=99.92 Aligned_cols=147 Identities=18% Similarity=0.287 Sum_probs=108.5
Q ss_pred CceEEEEecccCCCC------cceeechHHHHHHHHhhcc---CcccCCeEEEeCCCCcHHHHHHHHhC-CCeEEEEeCC
Q 026036 40 EMELVIREFAFHQLN------ANFLWPGTFSFAEWLMHHR---EWIERRRCIELGSGTGALAIFLRKAM-NLDITTSDYN 109 (244)
Q Consensus 40 ~~~~~~~~~~~~~~~------~~~~w~~~~~l~~~~~~~~---~~~~~~~VLdlG~G~G~~~~~~a~~~-~~~v~~~D~~ 109 (244)
+.++.+++..+.++. -....|.++.+.+++.+.. ...++..+||+|||+|.+++.++... .+.|+++|.|
T Consensus 102 PlQYIlg~~~F~~l~l~~~pgVlIPRpETEE~V~~Vid~~~~~~~~~~~~ildlgtGSGaIslsll~~L~~~~v~AiD~S 181 (328)
T KOG2904|consen 102 PLQYILGSQPFGDLDLVCKPGVLIPRPETEEWVEAVIDALNNSEHSKHTHILDLGTGSGAISLSLLHGLPQCTVTAIDVS 181 (328)
T ss_pred ChhheeccCccCCceEEecCCeeecCccHHHHHHHHHHHHhhhhhcccceEEEecCCccHHHHHHHhcCCCceEEEEecc
Confidence 366666666655542 1456777999999987653 23455679999999999999987765 6789999999
Q ss_pred hHHHHHHHHHhHHhcCCCCCcceEee----ecCCCCCCCCCCccEEEEcccccCCc-----------------------C
Q 026036 110 DQEIEDNIAYNSTTNGITPALPHIKH----SWGDAFPIPNPDWDLILASDILLYVK-----------------------Q 162 (244)
Q Consensus 110 ~~~l~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~fD~I~~~~~l~~~~-----------------------~ 162 (244)
+.++ ..+.+|+..+.+.+.+..+.. ++.++.+...++.|+++||.+.-.+. .
T Consensus 182 ~~Ai-~La~eN~qr~~l~g~i~v~~~~me~d~~~~~~l~~~~~dllvsNPPYI~~dD~~~l~~eV~~yEp~lALdGg~eG 260 (328)
T KOG2904|consen 182 KAAI-KLAKENAQRLKLSGRIEVIHNIMESDASDEHPLLEGKIDLLVSNPPYIRKDDNRQLKPEVRLYEPKLALDGGLEG 260 (328)
T ss_pred HHHH-HHHHHHHHHHhhcCceEEEecccccccccccccccCceeEEecCCCcccccchhhcCchheecCchhhhccccch
Confidence 9987 888999999988888777744 44455556678999999988753222 1
Q ss_pred hHHHHHHHHHHHHhcCCCCceEeec
Q 026036 163 YSNLIKSLSVLLKSYKPKDSQVGHL 187 (244)
Q Consensus 163 ~~~l~~~l~~~~~~lk~gG~~~~~~ 187 (244)
...+.....-+.|+|+|||.+.+..
T Consensus 261 ~~~~~~~~~~a~R~Lq~gg~~~le~ 285 (328)
T KOG2904|consen 261 YDNLVHYWLLATRMLQPGGFEQLEL 285 (328)
T ss_pred hHHHHHHHHhhHhhcccCCeEEEEe
Confidence 2334566667789999999877763
|
|
| >PRK11727 23S rRNA mA1618 methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.39 E-value=6e-12 Score=105.16 Aligned_cols=155 Identities=12% Similarity=0.067 Sum_probs=95.8
Q ss_pred cCCeEEEeCCCCcHHHHHHHHh-CCCeEEEEeCChHHHHHHHHHhHHhc-CCCCCcceEee-ecCCCC---CCCCCCccE
Q 026036 77 ERRRCIELGSGTGALAIFLRKA-MNLDITTSDYNDQEIEDNIAYNSTTN-GITPALPHIKH-SWGDAF---PIPNPDWDL 150 (244)
Q Consensus 77 ~~~~VLdlG~G~G~~~~~~a~~-~~~~v~~~D~~~~~l~~~~~~~~~~~-~~~~~~~~~~~-~~~~~~---~~~~~~fD~ 150 (244)
++.+|||||||+|.+...++.+ .+.+++|+|+++.++ +.+++|+..| ++..++..+.. +..+.. ....++||+
T Consensus 114 ~~~~vLDIGtGag~I~~lLa~~~~~~~~~atDId~~Al-~~A~~Nv~~Np~l~~~I~~~~~~~~~~i~~~i~~~~~~fDl 192 (321)
T PRK11727 114 ANVRVLDIGVGANCIYPLIGVHEYGWRFVGSDIDPQAL-ASAQAIISANPGLNGAIRLRLQKDSKAIFKGIIHKNERFDA 192 (321)
T ss_pred CCceEEEecCCccHHHHHHHhhCCCCEEEEEeCCHHHH-HHHHHHHHhccCCcCcEEEEEccchhhhhhcccccCCceEE
Confidence 4679999999999887666554 378999999999987 8999999999 68665544321 111211 123458999
Q ss_pred EEEcccccCCcChHH--HHHHHHHH----------------HHhcCCCCceEeecccccCCCCCCCCCCCeEEEeeeecc
Q 026036 151 ILASDILLYVKQYSN--LIKSLSVL----------------LKSYKPKDSQVGHLTKNEQGEGTEGLPWPAFLMSWRRRI 212 (244)
Q Consensus 151 I~~~~~l~~~~~~~~--l~~~l~~~----------------~~~lk~gG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 212 (244)
|+||.++|....... -.+..+.+ ..++.+||.+.++........ .+.....|+...-...
T Consensus 193 ivcNPPf~~s~~ea~~~~~rk~r~~ar~~~~~~~l~f~g~~~EL~~~GGe~~fi~~mi~eS~--~~~~~~gwftsmv~kk 270 (321)
T PRK11727 193 TLCNPPFHASAAEARAGSQRKLRNLGLNKDKKKVLNFGGQQAELWCEGGEVAFIKRMIEESK--AFAKQVLWFTSLVSKK 270 (321)
T ss_pred EEeCCCCcCcchhhccchhhHHhhhhccCCCccccCCcchhhheeeCCcEeeeehHhhHHHH--HHHhhCcEEEEEeecc
Confidence 999999854332210 01112222 233457777666633222221 1111223565555554
Q ss_pred CccchhhHHHHHhhcCCeEEEecc
Q 026036 213 GKEDETIFFTSCENAGLEVKHLGS 236 (244)
Q Consensus 213 ~~~~~~~~~~~l~~~Gf~v~~~~~ 236 (244)
.. ...+.+.+++.|.....+.+
T Consensus 271 ~~--l~~l~~~L~~~~~~~~~~~e 292 (321)
T PRK11727 271 EN--LPPLYRALKKVGAVEVKTIE 292 (321)
T ss_pred CC--HHHHHHHHHHcCCceEEEEE
Confidence 33 68999999999996555543
|
|
| >TIGR02081 metW methionine biosynthesis protein MetW | Back alignment and domain information |
|---|
Probab=99.39 E-value=1e-11 Score=97.48 Aligned_cols=142 Identities=15% Similarity=0.219 Sum_probs=86.9
Q ss_pred cCCeEEEeCCCCcHHHHHHHHhCCCeEEEEeCChHHHHHHHHHhHHhcCCCCCcceEeeecCCCC-CCCCCCccEEEEcc
Q 026036 77 ERRRCIELGSGTGALAIFLRKAMNLDITTSDYNDQEIEDNIAYNSTTNGITPALPHIKHSWGDAF-PIPNPDWDLILASD 155 (244)
Q Consensus 77 ~~~~VLdlG~G~G~~~~~~a~~~~~~v~~~D~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~fD~I~~~~ 155 (244)
++.+|||+|||+|.++..++...+.+++++|++++++ +.++. +++ ..+..+..+.+ ++.+++||+|+++.
T Consensus 13 ~~~~iLDiGcG~G~~~~~l~~~~~~~~~giD~s~~~i-~~a~~----~~~----~~~~~d~~~~l~~~~~~sfD~Vi~~~ 83 (194)
T TIGR02081 13 PGSRVLDLGCGDGELLALLRDEKQVRGYGIEIDQDGV-LACVA----RGV----NVIQGDLDEGLEAFPDKSFDYVILSQ 83 (194)
T ss_pred CCCEEEEeCCCCCHHHHHHHhccCCcEEEEeCCHHHH-HHHHH----cCC----eEEEEEhhhcccccCCCCcCEEEEhh
Confidence 5679999999999999888776677899999999887 44432 122 33444443323 24567899999999
Q ss_pred cccCCcChHHHHHHHHHHHHhcCCCCceEeecccccCCC--------CCCC-CC-CC-eEEEeeeeccCccchhhHHHHH
Q 026036 156 ILLYVKQYSNLIKSLSVLLKSYKPKDSQVGHLTKNEQGE--------GTEG-LP-WP-AFLMSWRRRIGKEDETIFFTSC 224 (244)
Q Consensus 156 ~l~~~~~~~~l~~~l~~~~~~lk~gG~~~~~~~~~~~~~--------~~~~-~~-~~-~~~~~~~~~~~~~~~~~~~~~l 224 (244)
++++. ++..++++++.+.+++ .++..+...... ..+. .. .+ .|......++. +..++.+++
T Consensus 84 ~l~~~---~d~~~~l~e~~r~~~~---~ii~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--s~~~~~~ll 155 (194)
T TIGR02081 84 TLQAT---RNPEEILDEMLRVGRH---AIVSFPNFGYWRVRWSILTKGRMPVTGELPYDWYNTPNIHFC--TIADFEDLC 155 (194)
T ss_pred HhHcC---cCHHHHHHHHHHhCCe---EEEEcCChhHHHHHHHHHhCCccccCCCCCccccCCCCcccC--cHHHHHHHH
Confidence 98433 3455788888876543 344432221000 0000 00 00 11111111232 368999999
Q ss_pred hhcCCeEEEec
Q 026036 225 ENAGLEVKHLG 235 (244)
Q Consensus 225 ~~~Gf~v~~~~ 235 (244)
+++||++.+..
T Consensus 156 ~~~Gf~v~~~~ 166 (194)
T TIGR02081 156 GELNLRILDRA 166 (194)
T ss_pred HHCCCEEEEEE
Confidence 99999998753
|
This protein is found alongside MetX, of the enzyme that acylates homoserine as a first step toward methionine biosynthesis, in many species. It appears to act in methionine biosynthesis but is not fully characterized. |
| >PRK10909 rsmD 16S rRNA m(2)G966-methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.39 E-value=2.9e-12 Score=100.45 Aligned_cols=123 Identities=14% Similarity=0.104 Sum_probs=82.6
Q ss_pred eechHHHHHHHHhhcc-CcccCCeEEEeCCCCcHHHHHHHHhCCCeEEEEeCChHHHHHHHHHhHHhcCCCCCcceEeee
Q 026036 58 LWPGTFSFAEWLMHHR-EWIERRRCIELGSGTGALAIFLRKAMNLDITTSDYNDQEIEDNIAYNSTTNGITPALPHIKHS 136 (244)
Q Consensus 58 ~w~~~~~l~~~~~~~~-~~~~~~~VLdlG~G~G~~~~~~a~~~~~~v~~~D~~~~~l~~~~~~~~~~~~~~~~~~~~~~~ 136 (244)
+.|.+..+.+.+.... ...++.+|||+|||+|.+++.++..+..+|+++|+++.++ +.+++|+..+++. ++..+..+
T Consensus 33 ~Rp~~d~v~e~l~~~l~~~~~~~~vLDl~~GsG~l~l~~lsr~a~~V~~vE~~~~a~-~~a~~Nl~~~~~~-~v~~~~~D 110 (199)
T PRK10909 33 LRPTTDRVRETLFNWLAPVIVDARCLDCFAGSGALGLEALSRYAAGATLLEMDRAVA-QQLIKNLATLKAG-NARVVNTN 110 (199)
T ss_pred cCcCCHHHHHHHHHHHhhhcCCCEEEEcCCCccHHHHHHHHcCCCEEEEEECCHHHH-HHHHHHHHHhCCC-cEEEEEch
Confidence 3567776655544432 2246789999999999999876555678999999999987 8888998888763 34444434
Q ss_pred cCCCCCCCCCCccEEEEcccccCCcChHHHHHHHHHHHH--hcCCCCceEee
Q 026036 137 WGDAFPIPNPDWDLILASDILLYVKQYSNLIKSLSVLLK--SYKPKDSQVGH 186 (244)
Q Consensus 137 ~~~~~~~~~~~fD~I~~~~~l~~~~~~~~l~~~l~~~~~--~lk~gG~~~~~ 186 (244)
..+.++....+||+|+++.++ .....+ .+++.+.. .++|++.+++.
T Consensus 111 ~~~~l~~~~~~fDlV~~DPPy-~~g~~~---~~l~~l~~~~~l~~~~iv~ve 158 (199)
T PRK10909 111 ALSFLAQPGTPHNVVFVDPPF-RKGLLE---ETINLLEDNGWLADEALIYVE 158 (199)
T ss_pred HHHHHhhcCCCceEEEECCCC-CCChHH---HHHHHHHHCCCcCCCcEEEEE
Confidence 333222223469999998884 443333 44444444 47888877665
|
|
| >PTZ00146 fibrillarin; Provisional | Back alignment and domain information |
|---|
Probab=99.38 E-value=2.2e-11 Score=99.84 Aligned_cols=122 Identities=11% Similarity=0.034 Sum_probs=77.3
Q ss_pred ceeechH-HHHHHHHhh---ccCcccCCeEEEeCCCCcHHHHHHHHhC--CCeEEEEeCChHHHHHHHHHhHHhcCCCCC
Q 026036 56 NFLWPGT-FSFAEWLMH---HREWIERRRCIELGSGTGALAIFLRKAM--NLDITTSDYNDQEIEDNIAYNSTTNGITPA 129 (244)
Q Consensus 56 ~~~w~~~-~~l~~~~~~---~~~~~~~~~VLdlG~G~G~~~~~~a~~~--~~~v~~~D~~~~~l~~~~~~~~~~~~~~~~ 129 (244)
..+|..- -.|+..++. ...+.++.+|||||||+|..+..++... ..+|+++|+++.++.+.+.......++
T Consensus 107 yR~w~p~rSKlaa~i~~g~~~l~IkpG~~VLDLGaG~G~~t~~lAdiVG~~G~VyAVD~s~r~~~dLl~~ak~r~NI--- 183 (293)
T PTZ00146 107 YRVWNPFRSKLAAAIIGGVANIPIKPGSKVLYLGAASGTTVSHVSDLVGPEGVVYAVEFSHRSGRDLTNMAKKRPNI--- 183 (293)
T ss_pred eeeeCCcccHHHHHHHCCcceeccCCCCEEEEeCCcCCHHHHHHHHHhCCCCEEEEEECcHHHHHHHHHHhhhcCCC---
Confidence 5667552 355544433 2456789999999999999999999886 357999999987653333322222222
Q ss_pred cceEeeecCCC--CCCCCCCccEEEEcccccCCcChHHHHHHHHHHHHhcCCCCceEee
Q 026036 130 LPHIKHSWGDA--FPIPNPDWDLILASDILLYVKQYSNLIKSLSVLLKSYKPKDSQVGH 186 (244)
Q Consensus 130 ~~~~~~~~~~~--~~~~~~~fD~I~~~~~l~~~~~~~~l~~~l~~~~~~lk~gG~~~~~ 186 (244)
..+..+..++ .....++||+|++... . ..+...++.++.+.|||||++++.
T Consensus 184 -~~I~~Da~~p~~y~~~~~~vDvV~~Dva--~---pdq~~il~~na~r~LKpGG~~vI~ 236 (293)
T PTZ00146 184 -VPIIEDARYPQKYRMLVPMVDVIFADVA--Q---PDQARIVALNAQYFLKNGGHFIIS 236 (293)
T ss_pred -EEEECCccChhhhhcccCCCCEEEEeCC--C---cchHHHHHHHHHHhccCCCEEEEE
Confidence 2333332221 1122357999988442 2 223335556889999999998885
|
|
| >TIGR00091 tRNA (guanine-N(7)-)-methyltransferase | Back alignment and domain information |
|---|
Probab=99.38 E-value=3.7e-12 Score=100.04 Aligned_cols=108 Identities=11% Similarity=0.067 Sum_probs=75.3
Q ss_pred cCCeEEEeCCCCcHHHHHHHHhC-CCeEEEEeCChHHHHHHHHHhHHhcCCCCCcceEeeecCCCCC--CCCCCccEEEE
Q 026036 77 ERRRCIELGSGTGALAIFLRKAM-NLDITTSDYNDQEIEDNIAYNSTTNGITPALPHIKHSWGDAFP--IPNPDWDLILA 153 (244)
Q Consensus 77 ~~~~VLdlG~G~G~~~~~~a~~~-~~~v~~~D~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~fD~I~~ 153 (244)
.+.+|||||||+|.++..++... ..+|+|+|+++.++ +.+++++...++. ++..+..+..+... ..++++|.|++
T Consensus 16 ~~~~ilDiGcG~G~~~~~la~~~p~~~v~gvD~~~~~l-~~a~~~~~~~~l~-ni~~i~~d~~~~~~~~~~~~~~d~v~~ 93 (194)
T TIGR00091 16 KAPLHLEIGCGKGRFLIDMAKQNPDKNFLGIEIHTPIV-LAANNKANKLGLK-NLHVLCGDANELLDKFFPDGSLSKVFL 93 (194)
T ss_pred CCceEEEeCCCccHHHHHHHHhCCCCCEEEEEeeHHHH-HHHHHHHHHhCCC-CEEEEccCHHHHHHhhCCCCceeEEEE
Confidence 45699999999999999998876 56899999999987 7777777766663 34444333322111 23458999998
Q ss_pred cccccCCcC-h----HHHHHHHHHHHHhcCCCCceEee
Q 026036 154 SDILLYVKQ-Y----SNLIKSLSVLLKSYKPKDSQVGH 186 (244)
Q Consensus 154 ~~~l~~~~~-~----~~l~~~l~~~~~~lk~gG~~~~~ 186 (244)
+.+..+... . -.....+++++++|||||.+++.
T Consensus 94 ~~pdpw~k~~h~~~r~~~~~~l~~~~r~LkpgG~l~~~ 131 (194)
T TIGR00091 94 NFPDPWPKKRHNKRRITQPHFLKEYANVLKKGGVIHFK 131 (194)
T ss_pred ECCCcCCCCCccccccCCHHHHHHHHHHhCCCCEEEEE
Confidence 754322111 1 00137889999999999999887
|
In E. coli, this protein flanks the DNA repair protein MutY, also called micA. |
| >PRK13255 thiopurine S-methyltransferase; Reviewed | Back alignment and domain information |
|---|
Probab=99.36 E-value=1.6e-11 Score=97.86 Aligned_cols=123 Identities=12% Similarity=0.038 Sum_probs=81.0
Q ss_pred HHHHHHHHhhccCcccCCeEEEeCCCCcHHHHHHHHhCCCeEEEEeCChHHHHHHHHHhHHhcCC-------CCCcceEe
Q 026036 62 TFSFAEWLMHHREWIERRRCIELGSGTGALAIFLRKAMNLDITTSDYNDQEIEDNIAYNSTTNGI-------TPALPHIK 134 (244)
Q Consensus 62 ~~~l~~~~~~~~~~~~~~~VLdlG~G~G~~~~~~a~~~~~~v~~~D~~~~~l~~~~~~~~~~~~~-------~~~~~~~~ 134 (244)
...|.+++... ...++.+|||+|||.|..++.+|.+ +.+|+|+|+|+.++....+++...+.. ......+.
T Consensus 23 ~~~L~~~~~~~-~~~~~~rvL~~gCG~G~da~~LA~~-G~~V~avD~s~~Ai~~~~~~~~l~~~~~~~~~~~~~~~~~v~ 100 (218)
T PRK13255 23 NPLLQKYWPAL-ALPAGSRVLVPLCGKSLDMLWLAEQ-GHEVLGVELSELAVEQFFAENGLTPQTRQSGEFEHYQAGEIT 100 (218)
T ss_pred CHHHHHHHHhh-CCCCCCeEEEeCCCChHhHHHHHhC-CCeEEEEccCHHHHHHHHHHcCCCccccccccccccccCceE
Confidence 34555555432 2235679999999999999999976 889999999999884333222111000 00011233
Q ss_pred eecCCCCCC---CCCCccEEEEcccccCCcChHHHHHHHHHHHHhcCCCCceEeec
Q 026036 135 HSWGDAFPI---PNPDWDLILASDILLYVKQYSNLIKSLSVLLKSYKPKDSQVGHL 187 (244)
Q Consensus 135 ~~~~~~~~~---~~~~fD~I~~~~~l~~~~~~~~l~~~l~~~~~~lk~gG~~~~~~ 187 (244)
+..+|.... ..+.||.|+-..++ .+...+...+.++.+.++|+|||++++.+
T Consensus 101 ~~~~D~~~l~~~~~~~fd~v~D~~~~-~~l~~~~R~~~~~~l~~lL~pgG~~~l~~ 155 (218)
T PRK13255 101 IYCGDFFALTAADLADVDAVYDRAAL-IALPEEMRERYVQQLAALLPAGCRGLLVT 155 (218)
T ss_pred EEECcccCCCcccCCCeeEEEehHhH-hhCCHHHHHHHHHHHHHHcCCCCeEEEEE
Confidence 334444333 23579999988776 55666667799999999999999866653
|
|
| >KOG1541 consensus Predicted protein carboxyl methylase [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.36 E-value=8.5e-12 Score=96.48 Aligned_cols=101 Identities=15% Similarity=0.231 Sum_probs=78.6
Q ss_pred cCCeEEEeCCCCcHHHHHHHHhCCCeEEEEeCChHHHHHHHHHhHHhcCCCCCcceEeeecCCCCCCCCCCccEEEEccc
Q 026036 77 ERRRCIELGSGTGALAIFLRKAMNLDITTSDYNDQEIEDNIAYNSTTNGITPALPHIKHSWGDAFPIPNPDWDLILASDI 156 (244)
Q Consensus 77 ~~~~VLdlG~G~G~~~~~~a~~~~~~v~~~D~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fD~I~~~~~ 156 (244)
+..-|||||||+|+.+..+... +...+|+|+|+.|+..+.++.++ + ..+..+.++.+++..+.||-+|+...
T Consensus 50 ~~~~iLDIGCGsGLSg~vL~~~-Gh~wiGvDiSpsML~~a~~~e~e--g-----dlil~DMG~GlpfrpGtFDg~ISISA 121 (270)
T KOG1541|consen 50 KSGLILDIGCGSGLSGSVLSDS-GHQWIGVDISPSMLEQAVERELE--G-----DLILCDMGEGLPFRPGTFDGVISISA 121 (270)
T ss_pred CCcEEEEeccCCCcchheeccC-CceEEeecCCHHHHHHHHHhhhh--c-----CeeeeecCCCCCCCCCccceEEEeee
Confidence 4668999999999999888765 57899999999998443333322 1 35667888999999999999998776
Q ss_pred ccCC---------cChHHHHHHHHHHHHhcCCCCceEee
Q 026036 157 LLYV---------KQYSNLIKSLSVLLKSYKPKDSQVGH 186 (244)
Q Consensus 157 l~~~---------~~~~~l~~~l~~~~~~lk~gG~~~~~ 186 (244)
+ ++ .....+...+..++.+|++|++.++.
T Consensus 122 v-QWLcnA~~s~~~P~~Rl~~FF~tLy~~l~rg~raV~Q 159 (270)
T KOG1541|consen 122 V-QWLCNADKSLHVPKKRLLRFFGTLYSCLKRGARAVLQ 159 (270)
T ss_pred e-eeecccCccccChHHHHHHHhhhhhhhhccCceeEEE
Confidence 6 22 23445667788899999999998876
|
|
| >PRK00312 pcm protein-L-isoaspartate O-methyltransferase; Reviewed | Back alignment and domain information |
|---|
Probab=99.36 E-value=2e-11 Score=97.26 Aligned_cols=114 Identities=15% Similarity=0.104 Sum_probs=78.4
Q ss_pred HHHHHHHHhhccCcccCCeEEEeCCCCcHHHHHHHHhCCCeEEEEeCChHHHHHHHHHhHHhcCCCCCcceEeeecCCCC
Q 026036 62 TFSFAEWLMHHREWIERRRCIELGSGTGALAIFLRKAMNLDITTSDYNDQEIEDNIAYNSTTNGITPALPHIKHSWGDAF 141 (244)
Q Consensus 62 ~~~l~~~~~~~~~~~~~~~VLdlG~G~G~~~~~~a~~~~~~v~~~D~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 141 (244)
...+..++.......++.+|||+|||+|..+..++.. ..+|+++|++++++ +.++++....++.. +..+..+..+..
T Consensus 63 ~p~~~~~l~~~l~~~~~~~VLeiG~GsG~~t~~la~~-~~~v~~vd~~~~~~-~~a~~~~~~~~~~~-v~~~~~d~~~~~ 139 (212)
T PRK00312 63 QPYMVARMTELLELKPGDRVLEIGTGSGYQAAVLAHL-VRRVFSVERIKTLQ-WEAKRRLKQLGLHN-VSVRHGDGWKGW 139 (212)
T ss_pred cHHHHHHHHHhcCCCCCCEEEEECCCccHHHHHHHHH-hCEEEEEeCCHHHH-HHHHHHHHHCCCCc-eEEEECCcccCC
Confidence 3444555555556668889999999999999888776 45899999999886 77888877665522 333322222211
Q ss_pred CCCCCCccEEEEcccccCCcChHHHHHHHHHHHHhcCCCCceEeecc
Q 026036 142 PIPNPDWDLILASDILLYVKQYSNLIKSLSVLLKSYKPKDSQVGHLT 188 (244)
Q Consensus 142 ~~~~~~fD~I~~~~~l~~~~~~~~l~~~l~~~~~~lk~gG~~~~~~~ 188 (244)
+ ..++||+|++...+ . ...+.+.+.|+|||++++.+.
T Consensus 140 ~-~~~~fD~I~~~~~~-~--------~~~~~l~~~L~~gG~lv~~~~ 176 (212)
T PRK00312 140 P-AYAPFDRILVTAAA-P--------EIPRALLEQLKEGGILVAPVG 176 (212)
T ss_pred C-cCCCcCEEEEccCc-h--------hhhHHHHHhcCCCcEEEEEEc
Confidence 1 23689999997654 1 123457889999999888643
|
|
| >PRK15128 23S rRNA m(5)C1962 methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.35 E-value=9.1e-12 Score=107.51 Aligned_cols=108 Identities=14% Similarity=0.133 Sum_probs=77.7
Q ss_pred cCCeEEEeCCCCcHHHHHHHHhCCCeEEEEeCChHHHHHHHHHhHHhcCCC-CCcceEeeecCCCCC---CCCCCccEEE
Q 026036 77 ERRRCIELGSGTGALAIFLRKAMNLDITTSDYNDQEIEDNIAYNSTTNGIT-PALPHIKHSWGDAFP---IPNPDWDLIL 152 (244)
Q Consensus 77 ~~~~VLdlG~G~G~~~~~~a~~~~~~v~~~D~~~~~l~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~---~~~~~fD~I~ 152 (244)
++++|||+|||+|.+++.++..+..+|+++|+++.++ +.+++|+..|++. .++..+..+..+.+. ...++||+|+
T Consensus 220 ~g~rVLDlfsgtG~~~l~aa~~ga~~V~~VD~s~~al-~~a~~N~~~Ngl~~~~v~~i~~D~~~~l~~~~~~~~~fDlVi 298 (396)
T PRK15128 220 ENKRVLNCFSYTGGFAVSALMGGCSQVVSVDTSQEAL-DIARQNVELNKLDLSKAEFVRDDVFKLLRTYRDRGEKFDVIV 298 (396)
T ss_pred CCCeEEEeccCCCHHHHHHHhCCCCEEEEEECCHHHH-HHHHHHHHHcCCCCCcEEEEEccHHHHHHHHHhcCCCCCEEE
Confidence 6789999999999999887765566999999999987 8899999999884 244444433322221 1235799999
Q ss_pred EcccccCCcChH-------HHHHHHHHHHHhcCCCCceEee
Q 026036 153 ASDILLYVKQYS-------NLIKSLSVLLKSYKPKDSQVGH 186 (244)
Q Consensus 153 ~~~~l~~~~~~~-------~l~~~l~~~~~~lk~gG~~~~~ 186 (244)
+..+. ...... ...+.++...++|+|||.++..
T Consensus 299 lDPP~-f~~~k~~l~~~~~~y~~l~~~a~~lLk~gG~lv~~ 338 (396)
T PRK15128 299 MDPPK-FVENKSQLMGACRGYKDINMLAIQLLNPGGILLTF 338 (396)
T ss_pred ECCCC-CCCChHHHHHHHHHHHHHHHHHHHHcCCCeEEEEE
Confidence 98776 333322 2334455678999999977654
|
|
| >PRK03522 rumB 23S rRNA methyluridine methyltransferase; Reviewed | Back alignment and domain information |
|---|
Probab=99.35 E-value=1.8e-11 Score=103.16 Aligned_cols=102 Identities=12% Similarity=0.080 Sum_probs=68.4
Q ss_pred ccCCeEEEeCCCCcHHHHHHHHhCCCeEEEEeCChHHHHHHHHHhHHhcCCCCCcceEeeecCCCCCCCCCCccEEEEcc
Q 026036 76 IERRRCIELGSGTGALAIFLRKAMNLDITTSDYNDQEIEDNIAYNSTTNGITPALPHIKHSWGDAFPIPNPDWDLILASD 155 (244)
Q Consensus 76 ~~~~~VLdlG~G~G~~~~~~a~~~~~~v~~~D~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fD~I~~~~ 155 (244)
.++.+|||+|||+|.+++.++.. +.+|+|+|+++.++ +.+++|+..+++ .++..+..+..+......+.||+|+++.
T Consensus 172 ~~~~~VLDl~cG~G~~sl~la~~-~~~V~gvD~s~~av-~~A~~n~~~~~l-~~v~~~~~D~~~~~~~~~~~~D~Vv~dP 248 (315)
T PRK03522 172 LPPRSMWDLFCGVGGFGLHCATP-GMQLTGIEISAEAI-ACAKQSAAELGL-TNVQFQALDSTQFATAQGEVPDLVLVNP 248 (315)
T ss_pred cCCCEEEEccCCCCHHHHHHHhc-CCEEEEEeCCHHHH-HHHHHHHHHcCC-CceEEEEcCHHHHHHhcCCCCeEEEECC
Confidence 35689999999999999999986 57999999999998 888999988887 3344444333222221234699999976
Q ss_pred cccCCcChHHHHHHHHHHHHhcCCCCceEee
Q 026036 156 ILLYVKQYSNLIKSLSVLLKSYKPKDSQVGH 186 (244)
Q Consensus 156 ~l~~~~~~~~l~~~l~~~~~~lk~gG~~~~~ 186 (244)
+- .. ... .+++.+ ..++|++.++++
T Consensus 249 Pr-~G-~~~---~~~~~l-~~~~~~~ivyvs 273 (315)
T PRK03522 249 PR-RG-IGK---ELCDYL-SQMAPRFILYSS 273 (315)
T ss_pred CC-CC-ccH---HHHHHH-HHcCCCeEEEEE
Confidence 62 21 122 333333 335676654444
|
|
| >PRK11088 rrmA 23S rRNA methyltransferase A; Provisional | Back alignment and domain information |
|---|
Probab=99.34 E-value=1e-11 Score=102.58 Aligned_cols=110 Identities=15% Similarity=0.158 Sum_probs=73.5
Q ss_pred HHHHHHHHhhccCcccCCeEEEeCCCCcHHHHHHHHhC----CCeEEEEeCChHHHHHHHHHhHHhcCCCCCcceEeeec
Q 026036 62 TFSFAEWLMHHREWIERRRCIELGSGTGALAIFLRKAM----NLDITTSDYNDQEIEDNIAYNSTTNGITPALPHIKHSW 137 (244)
Q Consensus 62 ~~~l~~~~~~~~~~~~~~~VLdlG~G~G~~~~~~a~~~----~~~v~~~D~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~ 137 (244)
...+++.+..... .++.+|||+|||+|.++..++... +.+|+|+|+|+.++ +.++++. . .+..+..+.
T Consensus 71 ~~~i~~~l~~~l~-~~~~~vLDiGcG~G~~~~~l~~~~~~~~~~~v~giD~s~~~l-~~A~~~~--~----~~~~~~~d~ 142 (272)
T PRK11088 71 RDAVANLLAERLD-EKATALLDIGCGEGYYTHALADALPEITTMQLFGLDISKVAI-KYAAKRY--P----QVTFCVASS 142 (272)
T ss_pred HHHHHHHHHHhcC-CCCCeEEEECCcCCHHHHHHHHhcccccCCeEEEECCCHHHH-HHHHHhC--C----CCeEEEeec
Confidence 3444444443322 245689999999999998887654 24799999999987 5554432 1 122333332
Q ss_pred CCCCCCCCCCccEEEEcccccCCcChHHHHHHHHHHHHhcCCCCceEeecccc
Q 026036 138 GDAFPIPNPDWDLILASDILLYVKQYSNLIKSLSVLLKSYKPKDSQVGHLTKN 190 (244)
Q Consensus 138 ~~~~~~~~~~fD~I~~~~~l~~~~~~~~l~~~l~~~~~~lk~gG~~~~~~~~~ 190 (244)
..+++.+++||+|++... + ..++++.++|||||+++++++..
T Consensus 143 -~~lp~~~~sfD~I~~~~~-------~---~~~~e~~rvLkpgG~li~~~p~~ 184 (272)
T PRK11088 143 -HRLPFADQSLDAIIRIYA-------P---CKAEELARVVKPGGIVITVTPGP 184 (272)
T ss_pred -ccCCCcCCceeEEEEecC-------C---CCHHHHHhhccCCCEEEEEeCCC
Confidence 335667789999998533 1 23467899999999999875543
|
|
| >TIGR03438 probable methyltransferase | Back alignment and domain information |
|---|
Probab=99.33 E-value=1.6e-11 Score=102.79 Aligned_cols=108 Identities=12% Similarity=0.078 Sum_probs=72.5
Q ss_pred cCCeEEEeCCCCcHHHHHHHHhC--CCeEEEEeCChHHHHHHHHHhHHhcCCCCCcceEeeecCCCCCCCCC----CccE
Q 026036 77 ERRRCIELGSGTGALAIFLRKAM--NLDITTSDYNDQEIEDNIAYNSTTNGITPALPHIKHSWGDAFPIPNP----DWDL 150 (244)
Q Consensus 77 ~~~~VLdlG~G~G~~~~~~a~~~--~~~v~~~D~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~fD~ 150 (244)
++.+|||+|||+|..+..+++.. +.+|+++|+|++|+ +.+++++.......++..+..+..+..+.... ...+
T Consensus 63 ~~~~iLELGcGtG~~t~~Ll~~l~~~~~~~~iDiS~~mL-~~a~~~l~~~~p~~~v~~i~gD~~~~~~~~~~~~~~~~~~ 141 (301)
T TIGR03438 63 AGCELVELGSGSSRKTRLLLDALRQPARYVPIDISADAL-KESAAALAADYPQLEVHGICADFTQPLALPPEPAAGRRLG 141 (301)
T ss_pred CCCeEEecCCCcchhHHHHHHhhccCCeEEEEECCHHHH-HHHHHHHHhhCCCceEEEEEEcccchhhhhcccccCCeEE
Confidence 56799999999999999888776 57899999999998 56655544322111222233333332222222 2234
Q ss_pred EEEcccccCCcChHHHHHHHHHHHHhcCCCCceEee
Q 026036 151 ILASDILLYVKQYSNLIKSLSVLLKSYKPKDSQVGH 186 (244)
Q Consensus 151 I~~~~~l~~~~~~~~l~~~l~~~~~~lk~gG~~~~~ 186 (244)
+++..++ ++...++....++++++.|+|||.+++.
T Consensus 142 ~~~gs~~-~~~~~~e~~~~L~~i~~~L~pgG~~lig 176 (301)
T TIGR03438 142 FFPGSTI-GNFTPEEAVAFLRRIRQLLGPGGGLLIG 176 (301)
T ss_pred EEecccc-cCCCHHHHHHHHHHHHHhcCCCCEEEEe
Confidence 4444555 4455677889999999999999999875
|
This model represents a distinct set of uncharacterized proteins found in the bacteria. Analysis by PSI-BLAST shows remote sequence homology to methyltransferases |
| >PLN03075 nicotianamine synthase; Provisional | Back alignment and domain information |
|---|
Probab=99.33 E-value=2.4e-11 Score=99.94 Aligned_cols=106 Identities=15% Similarity=0.128 Sum_probs=74.3
Q ss_pred cCCeEEEeCCCCcHH-HHHHHHhC--CCeEEEEeCChHHHHHHHHHhHHh-cCCCCCcceEeeecCCCCCCCCCCccEEE
Q 026036 77 ERRRCIELGSGTGAL-AIFLRKAM--NLDITTSDYNDQEIEDNIAYNSTT-NGITPALPHIKHSWGDAFPIPNPDWDLIL 152 (244)
Q Consensus 77 ~~~~VLdlG~G~G~~-~~~~a~~~--~~~v~~~D~~~~~l~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~fD~I~ 152 (244)
++++|+|||||.|.+ ++.++... +.+++++|++++++ +.+++++.. .++..++.+...+..+..+ ..+.||+|+
T Consensus 123 ~p~~VldIGcGpgpltaiilaa~~~p~~~~~giD~d~~ai-~~Ar~~~~~~~gL~~rV~F~~~Da~~~~~-~l~~FDlVF 200 (296)
T PLN03075 123 VPTKVAFVGSGPLPLTSIVLAKHHLPTTSFHNFDIDPSAN-DVARRLVSSDPDLSKRMFFHTADVMDVTE-SLKEYDVVF 200 (296)
T ss_pred CCCEEEEECCCCcHHHHHHHHHhcCCCCEEEEEeCCHHHH-HHHHHHhhhccCccCCcEEEECchhhccc-ccCCcCEEE
Confidence 678999999997744 45454332 67899999999987 788877743 5565555555444433211 246899999
Q ss_pred EcccccCCcChHHHHHHHHHHHHhcCCCCceEee
Q 026036 153 ASDILLYVKQYSNLIKSLSVLLKSYKPKDSQVGH 186 (244)
Q Consensus 153 ~~~~l~~~~~~~~l~~~l~~~~~~lk~gG~~~~~ 186 (244)
+. ++.+. ..++-.+.++++++.|+|||.+++-
T Consensus 201 ~~-ALi~~-dk~~k~~vL~~l~~~LkPGG~Lvlr 232 (296)
T PLN03075 201 LA-ALVGM-DKEEKVKVIEHLGKHMAPGALLMLR 232 (296)
T ss_pred Ee-ccccc-ccccHHHHHHHHHHhcCCCcEEEEe
Confidence 99 55232 2234459999999999999988876
|
|
| >TIGR02085 meth_trns_rumB 23S rRNA (uracil-5-)-methyltransferase RumB | Back alignment and domain information |
|---|
Probab=99.33 E-value=2.3e-11 Score=104.71 Aligned_cols=115 Identities=11% Similarity=0.024 Sum_probs=75.0
Q ss_pred HHHHHHHhhccCcccCCeEEEeCCCCcHHHHHHHHhCCCeEEEEeCChHHHHHHHHHhHHhcCCCCCcceEeeecCCCCC
Q 026036 63 FSFAEWLMHHREWIERRRCIELGSGTGALAIFLRKAMNLDITTSDYNDQEIEDNIAYNSTTNGITPALPHIKHSWGDAFP 142 (244)
Q Consensus 63 ~~l~~~~~~~~~~~~~~~VLdlG~G~G~~~~~~a~~~~~~v~~~D~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 142 (244)
..+.+.+.......++.+|||+|||+|.+++.++.. +.+|+++|+++.++ +.+++|+..++++ ++..+..+..+.+.
T Consensus 219 ~~l~~~~~~~l~~~~~~~vLDL~cG~G~~~l~la~~-~~~v~~vE~~~~av-~~a~~N~~~~~~~-~~~~~~~d~~~~~~ 295 (374)
T TIGR02085 219 AQLYATARQWVREIPVTQMWDLFCGVGGFGLHCAGP-DTQLTGIEIESEAI-ACAQQSAQMLGLD-NLSFAALDSAKFAT 295 (374)
T ss_pred HHHHHHHHHHHHhcCCCEEEEccCCccHHHHHHhhc-CCeEEEEECCHHHH-HHHHHHHHHcCCC-cEEEEECCHHHHHH
Confidence 334343333323335679999999999999999865 57899999999997 8899999888873 34444433322222
Q ss_pred CCCCCccEEEEcccccCCcChHHHHHHHHHHHHhcCCCCceEee
Q 026036 143 IPNPDWDLILASDILLYVKQYSNLIKSLSVLLKSYKPKDSQVGH 186 (244)
Q Consensus 143 ~~~~~fD~I~~~~~l~~~~~~~~l~~~l~~~~~~lk~gG~~~~~ 186 (244)
....+||+|++..+- . ...+ ++++.+. .++|++.++++
T Consensus 296 ~~~~~~D~vi~DPPr-~-G~~~---~~l~~l~-~~~p~~ivyvs 333 (374)
T TIGR02085 296 AQMSAPELVLVNPPR-R-GIGK---ELCDYLS-QMAPKFILYSS 333 (374)
T ss_pred hcCCCCCEEEECCCC-C-CCcH---HHHHHHH-hcCCCeEEEEE
Confidence 122469999997663 3 2223 4445554 36788765554
|
This family consists of RNA methyltransferases designated RumB, formerly YbjF. Members act on 23S rRNA U747 and the equivalent position in other proteobacterial species. This family is homologous to the other 23S rRNA methyltransferase RumA and to the tRNA methyltransferase TrmA. |
| >COG2518 Pcm Protein-L-isoaspartate carboxylmethyltransferase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.32 E-value=2.8e-11 Score=94.08 Aligned_cols=113 Identities=19% Similarity=0.247 Sum_probs=84.8
Q ss_pred hHHHHHHHHhhccCcccCCeEEEeCCCCcHHHHHHHHhCCCeEEEEeCChHHHHHHHHHhHHhcCCCCCcceEeeecCCC
Q 026036 61 GTFSFAEWLMHHREWIERRRCIELGSGTGALAIFLRKAMNLDITTSDYNDQEIEDNIAYNSTTNGITPALPHIKHSWGDA 140 (244)
Q Consensus 61 ~~~~l~~~~~~~~~~~~~~~VLdlG~G~G~~~~~~a~~~~~~v~~~D~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 140 (244)
+...+...+.+...+.++.+|||||||+|..+-.+++. ..+|+.+|..++- .+.+++|....+.. .+....+|.
T Consensus 56 s~P~~vA~m~~~L~~~~g~~VLEIGtGsGY~aAvla~l-~~~V~siEr~~~L-~~~A~~~L~~lg~~----nV~v~~gDG 129 (209)
T COG2518 56 SAPHMVARMLQLLELKPGDRVLEIGTGSGYQAAVLARL-VGRVVSIERIEEL-AEQARRNLETLGYE----NVTVRHGDG 129 (209)
T ss_pred cCcHHHHHHHHHhCCCCCCeEEEECCCchHHHHHHHHH-hCeEEEEEEcHHH-HHHHHHHHHHcCCC----ceEEEECCc
Confidence 45555666666777889999999999999999999887 4499999999874 48889998888773 245555554
Q ss_pred CCC-C-CCCccEEEEcccccCCcChHHHHHHHHHHHHhcCCCCceEeecc
Q 026036 141 FPI-P-NPDWDLILASDILLYVKQYSNLIKSLSVLLKSYKPKDSQVGHLT 188 (244)
Q Consensus 141 ~~~-~-~~~fD~I~~~~~l~~~~~~~~l~~~l~~~~~~lk~gG~~~~~~~ 188 (244)
... + ..+||.|+.+... ...+ +.+.+.||+||++++-+-
T Consensus 130 ~~G~~~~aPyD~I~Vtaaa---~~vP------~~Ll~QL~~gGrlv~PvG 170 (209)
T COG2518 130 SKGWPEEAPYDRIIVTAAA---PEVP------EALLDQLKPGGRLVIPVG 170 (209)
T ss_pred ccCCCCCCCcCEEEEeecc---CCCC------HHHHHhcccCCEEEEEEc
Confidence 332 2 3589999998776 3344 236788999999887643
|
|
| >PF05219 DREV: DREV methyltransferase; InterPro: IPR007884 This family contains DREV protein homologues from several eukaryotes | Back alignment and domain information |
|---|
Probab=99.31 E-value=3.5e-11 Score=96.03 Aligned_cols=165 Identities=14% Similarity=0.153 Sum_probs=101.6
Q ss_pred cceeechHHHHHHHHhhcc----CcccCCeEEEeCCCCcHHHHHHHHhCCCeEEEEeCChHHHHHHHHHhHHhcCCCCCc
Q 026036 55 ANFLWPGTFSFAEWLMHHR----EWIERRRCIELGSGTGALAIFLRKAMNLDITTSDYNDQEIEDNIAYNSTTNGITPAL 130 (244)
Q Consensus 55 ~~~~w~~~~~l~~~~~~~~----~~~~~~~VLdlG~G~G~~~~~~a~~~~~~v~~~D~~~~~l~~~~~~~~~~~~~~~~~ 130 (244)
|.++--+...+.+++.... ......++||||+|.|.++..++.. -.+|++||.|..|. ..+++ .+.
T Consensus 68 G~MFvfS~~Q~~~LL~~~~~~~~~~~~~~~lLDlGAGdG~VT~~l~~~-f~~v~aTE~S~~Mr-~rL~~----kg~---- 137 (265)
T PF05219_consen 68 GSMFVFSEEQFRKLLRISGFSWNPDWKDKSLLDLGAGDGEVTERLAPL-FKEVYATEASPPMR-WRLSK----KGF---- 137 (265)
T ss_pred CcEEEecHHHHHHHhhhhccCCCCcccCCceEEecCCCcHHHHHHHhh-cceEEeecCCHHHH-HHHHh----CCC----
Confidence 4455556667777665431 2235678999999999999999775 66799999999885 43332 222
Q ss_pred ceE-eeecCCCCCCCCCCccEEEEcccccCCcChHHHHHHHHHHHHhcCCCCceEeecccc-cCCCCCC--CCCCCeEEE
Q 026036 131 PHI-KHSWGDAFPIPNPDWDLILASDILLYVKQYSNLIKSLSVLLKSYKPKDSQVGHLTKN-EQGEGTE--GLPWPAFLM 206 (244)
Q Consensus 131 ~~~-~~~~~~~~~~~~~~fD~I~~~~~l~~~~~~~~l~~~l~~~~~~lk~gG~~~~~~~~~-~~~~~~~--~~~~~~~~~ 206 (244)
..+ ..+|.+ .+.+||+|.|.+++ ..... ....++.+++.|+|+|++++.+.-+ ......- ....|.-.+
T Consensus 138 ~vl~~~~w~~----~~~~fDvIscLNvL-DRc~~--P~~LL~~i~~~l~p~G~lilAvVlP~~pyVE~~~g~~~~P~e~l 210 (265)
T PF05219_consen 138 TVLDIDDWQQ----TDFKFDVISCLNVL-DRCDR--PLTLLRDIRRALKPNGRLILAVVLPFRPYVEFGGGKSNRPSELL 210 (265)
T ss_pred eEEehhhhhc----cCCceEEEeehhhh-hccCC--HHHHHHHHHHHhCCCCEEEEEEEecccccEEcCCCCCCCchhhc
Confidence 111 122432 24579999999999 55443 4489999999999999998882222 1111000 011111111
Q ss_pred eeeeccCccchhhHHHHHhhcCCeEEEecc
Q 026036 207 SWRRRIGKEDETIFFTSCENAGLEVKHLGS 236 (244)
Q Consensus 207 ~~~~~~~~~~~~~~~~~l~~~Gf~v~~~~~ 236 (244)
......-.+....|.+.++-+||+++....
T Consensus 211 ~~~g~~~E~~v~~l~~v~~p~GF~v~~~tr 240 (265)
T PF05219_consen 211 PVKGATFEEQVSSLVNVFEPAGFEVERWTR 240 (265)
T ss_pred CCCCCcHHHHHHHHHHHHHhcCCEEEEEec
Confidence 111111112245667889999999998764
|
The function of this protein is unknown []. However, these proteins appear to be related to other methyltransferases. |
| >KOG2361 consensus Predicted methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.31 E-value=2.2e-11 Score=95.54 Aligned_cols=150 Identities=17% Similarity=0.103 Sum_probs=99.6
Q ss_pred eEEEeCCCCcHHHHHHHHhC---CCeEEEEeCChHHHHHHHHHhHHhcCCCCCcceEeeecCCC---CCCCCCCccEEEE
Q 026036 80 RCIELGSGTGALAIFLRKAM---NLDITTSDYNDQEIEDNIAYNSTTNGITPALPHIKHSWGDA---FPIPNPDWDLILA 153 (244)
Q Consensus 80 ~VLdlG~G~G~~~~~~a~~~---~~~v~~~D~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~fD~I~~ 153 (244)
+|||+|||.|.....+.+-. +..|.+.|.|+.++ +..+.+...+.. ++.....+...+ .+...+++|.|++
T Consensus 74 ~ilEvGCGvGNtvfPll~~~~n~~l~v~acDfsp~Ai-~~vk~~~~~~e~--~~~afv~Dlt~~~~~~~~~~~svD~it~ 150 (264)
T KOG2361|consen 74 TILEVGCGVGNTVFPLLKTSPNNRLKVYACDFSPRAI-ELVKKSSGYDES--RVEAFVWDLTSPSLKEPPEEGSVDIITL 150 (264)
T ss_pred hheeeccCCCcccchhhhcCCCCCeEEEEcCCChHHH-HHHHhccccchh--hhcccceeccchhccCCCCcCccceEEE
Confidence 89999999999887776654 36799999999987 777776654432 222222222211 2334568999999
Q ss_pred cccccCCcChHHHHHHHHHHHHhcCCCCceEeecccccCCCCCCCCCCCe----EEEee---eeccCccchhhHHHHHhh
Q 026036 154 SDILLYVKQYSNLIKSLSVLLKSYKPKDSQVGHLTKNEQGEGTEGLPWPA----FLMSW---RRRIGKEDETIFFTSCEN 226 (244)
Q Consensus 154 ~~~l~~~~~~~~l~~~l~~~~~~lk~gG~~~~~~~~~~~~~~~~~~~~~~----~~~~~---~~~~~~~~~~~~~~~l~~ 226 (244)
..++ ..-..+....++.++.++|||||.+++-.++.-+..+.-+..... +++.. +..+.. .+.+.+++.+
T Consensus 151 IFvL-SAi~pek~~~a~~nl~~llKPGG~llfrDYg~~DlaqlRF~~~~~i~~nfYVRgDGT~~YfF~--~eeL~~~f~~ 227 (264)
T KOG2361|consen 151 IFVL-SAIHPEKMQSVIKNLRTLLKPGGSLLFRDYGRYDLAQLRFKKGQCISENFYVRGDGTRAYFFT--EEELDELFTK 227 (264)
T ss_pred EEEE-eccChHHHHHHHHHHHHHhCCCcEEEEeecccchHHHHhccCCceeecceEEccCCceeeecc--HHHHHHHHHh
Confidence 9998 766777888999999999999999888755543322111111111 11111 112222 4677788999
Q ss_pred cCCeEEEec
Q 026036 227 AGLEVKHLG 235 (244)
Q Consensus 227 ~Gf~v~~~~ 235 (244)
+||+.++..
T Consensus 228 agf~~~~~~ 236 (264)
T KOG2361|consen 228 AGFEEVQLE 236 (264)
T ss_pred cccchhccc
Confidence 999877664
|
|
| >COG4106 Tam Trans-aconitate methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.31 E-value=1.1e-11 Score=95.59 Aligned_cols=105 Identities=20% Similarity=0.226 Sum_probs=76.9
Q ss_pred CcccCCeEEEeCCCCcHHHHHHHHhC-CCeEEEEeCChHHHHHHHHHhHHhcCCCCCcceEeeecCCCCCC-CCCCccEE
Q 026036 74 EWIERRRCIELGSGTGALAIFLRKAM-NLDITTSDYNDQEIEDNIAYNSTTNGITPALPHIKHSWGDAFPI-PNPDWDLI 151 (244)
Q Consensus 74 ~~~~~~~VLdlG~G~G~~~~~~a~~~-~~~v~~~D~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~fD~I 151 (244)
...+..+|.|||||+|..+..++++. .++++|+|-|++|+ +.++...- ...+..+|.-.+ +.+.+|++
T Consensus 27 p~~~~~~v~DLGCGpGnsTelL~~RwP~A~i~GiDsS~~Ml-a~Aa~rlp---------~~~f~~aDl~~w~p~~~~dll 96 (257)
T COG4106 27 PLERPRRVVDLGCGPGNSTELLARRWPDAVITGIDSSPAML-AKAAQRLP---------DATFEEADLRTWKPEQPTDLL 96 (257)
T ss_pred CccccceeeecCCCCCHHHHHHHHhCCCCeEeeccCCHHHH-HHHHHhCC---------CCceecccHhhcCCCCccchh
Confidence 44566799999999999999998887 78999999999998 44433211 112222333222 24579999
Q ss_pred EEcccccCCcChHHHHHHHHHHHHhcCCCCceEeeccccc
Q 026036 152 LASDILLYVKQYSNLIKSLSVLLKSYKPKDSQVGHLTKNE 191 (244)
Q Consensus 152 ~~~~~l~~~~~~~~l~~~l~~~~~~lk~gG~~~~~~~~~~ 191 (244)
++|.++ ++ .++-.+.+.++...|.|||.+.+..+++.
T Consensus 97 faNAvl-qW--lpdH~~ll~rL~~~L~Pgg~LAVQmPdN~ 133 (257)
T COG4106 97 FANAVL-QW--LPDHPELLPRLVSQLAPGGVLAVQMPDNL 133 (257)
T ss_pred hhhhhh-hh--ccccHHHHHHHHHhhCCCceEEEECCCcc
Confidence 999999 44 23334899999999999999999866553
|
|
| >PRK11188 rrmJ 23S rRNA methyltransferase J; Provisional | Back alignment and domain information |
|---|
Probab=99.30 E-value=1.1e-10 Score=92.55 Aligned_cols=99 Identities=10% Similarity=0.122 Sum_probs=67.5
Q ss_pred cccCCeEEEeCCCCcHHHHHHHHhC--CCeEEEEeCChHHHHHHHHHhHHhcCCCCCcceEeeecCCCC-------CCCC
Q 026036 75 WIERRRCIELGSGTGALAIFLRKAM--NLDITTSDYNDQEIEDNIAYNSTTNGITPALPHIKHSWGDAF-------PIPN 145 (244)
Q Consensus 75 ~~~~~~VLdlG~G~G~~~~~~a~~~--~~~v~~~D~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~ 145 (244)
..++.+|||||||+|..+..+++.. ..+|+++|+++ +. .. ..+..+..+..+.. +...
T Consensus 49 ~~~~~~VLDlG~GtG~~t~~l~~~~~~~~~V~aVDi~~-~~-----------~~-~~v~~i~~D~~~~~~~~~i~~~~~~ 115 (209)
T PRK11188 49 FKPGMTVVDLGAAPGGWSQYAVTQIGDKGRVIACDILP-MD-----------PI-VGVDFLQGDFRDELVLKALLERVGD 115 (209)
T ss_pred CCCCCEEEEEcccCCHHHHHHHHHcCCCceEEEEeccc-cc-----------CC-CCcEEEecCCCChHHHHHHHHHhCC
Confidence 4578899999999999999988875 35899999987 21 11 11234444443321 1345
Q ss_pred CCccEEEEcccccCCcCh--H------HHHHHHHHHHHhcCCCCceEee
Q 026036 146 PDWDLILASDILLYVKQY--S------NLIKSLSVLLKSYKPKDSQVGH 186 (244)
Q Consensus 146 ~~fD~I~~~~~l~~~~~~--~------~l~~~l~~~~~~lk~gG~~~~~ 186 (244)
++||+|+++.+.+..... + ....+++.+.++|||||++++.
T Consensus 116 ~~~D~V~S~~~~~~~g~~~~d~~~~~~~~~~~L~~~~~~LkpGG~~vi~ 164 (209)
T PRK11188 116 SKVQVVMSDMAPNMSGTPAVDIPRAMYLVELALDMCRDVLAPGGSFVVK 164 (209)
T ss_pred CCCCEEecCCCCccCCChHHHHHHHHHHHHHHHHHHHHHcCCCCEEEEE
Confidence 689999997655332211 1 1246889999999999998875
|
|
| >PRK10901 16S rRNA methyltransferase B; Provisional | Back alignment and domain information |
|---|
Probab=99.29 E-value=1.5e-10 Score=101.44 Aligned_cols=110 Identities=14% Similarity=0.120 Sum_probs=77.2
Q ss_pred CcccCCeEEEeCCCCcHHHHHHHHhCC-CeEEEEeCChHHHHHHHHHhHHhcCCCCCcceEeeecCCCCC-CCCCCccEE
Q 026036 74 EWIERRRCIELGSGTGALAIFLRKAMN-LDITTSDYNDQEIEDNIAYNSTTNGITPALPHIKHSWGDAFP-IPNPDWDLI 151 (244)
Q Consensus 74 ~~~~~~~VLdlG~G~G~~~~~~a~~~~-~~v~~~D~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~fD~I 151 (244)
...+|.+|||+|||+|..+..++.... .+|+++|+++.++ +.+++|+..++.. +..+..+..+... ...++||.|
T Consensus 241 ~~~~g~~VLDlgaG~G~~t~~la~~~~~~~v~a~D~s~~~l-~~~~~n~~~~g~~--~~~~~~D~~~~~~~~~~~~fD~V 317 (427)
T PRK10901 241 APQNGERVLDACAAPGGKTAHILELAPQAQVVALDIDAQRL-ERVRENLQRLGLK--ATVIVGDARDPAQWWDGQPFDRI 317 (427)
T ss_pred CCCCCCEEEEeCCCCChHHHHHHHHcCCCEEEEEeCCHHHH-HHHHHHHHHcCCC--eEEEEcCcccchhhcccCCCCEE
Confidence 345788999999999999999988764 6999999999987 8888888887762 2233323222111 124579999
Q ss_pred EEcccccCC------------cChHH-------HHHHHHHHHHhcCCCCceEee
Q 026036 152 LASDILLYV------------KQYSN-------LIKSLSVLLKSYKPKDSQVGH 186 (244)
Q Consensus 152 ~~~~~l~~~------------~~~~~-------l~~~l~~~~~~lk~gG~~~~~ 186 (244)
++..+.... ....+ ..+.+..+.+.|||||+++++
T Consensus 318 l~D~Pcs~~G~~~~~p~~~~~~~~~~l~~l~~~q~~iL~~a~~~LkpGG~lvys 371 (427)
T PRK10901 318 LLDAPCSATGVIRRHPDIKWLRRPEDIAALAALQSEILDALWPLLKPGGTLLYA 371 (427)
T ss_pred EECCCCCcccccccCccccccCCHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEE
Confidence 975543110 01111 236889999999999998876
|
|
| >PLN02781 Probable caffeoyl-CoA O-methyltransferase | Back alignment and domain information |
|---|
Probab=99.29 E-value=1.9e-11 Score=98.67 Aligned_cols=107 Identities=18% Similarity=0.161 Sum_probs=78.8
Q ss_pred cCcccCCeEEEeCCCCcHHHHHHHHhC--CCeEEEEeCChHHHHHHHHHhHHhcCCCCCcceEeeecCCCCCC-----CC
Q 026036 73 REWIERRRCIELGSGTGALAIFLRKAM--NLDITTSDYNDQEIEDNIAYNSTTNGITPALPHIKHSWGDAFPI-----PN 145 (244)
Q Consensus 73 ~~~~~~~~VLdlG~G~G~~~~~~a~~~--~~~v~~~D~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~ 145 (244)
....++++|||+|||+|..++.++... ..+|+++|++++++ +.+++|...+++..++..+..+..+.++. ..
T Consensus 64 ~~~~~~~~vLEiGt~~G~s~l~la~~~~~~g~v~tiD~d~~~~-~~A~~n~~~~gl~~~i~~~~gda~~~L~~l~~~~~~ 142 (234)
T PLN02781 64 VKIMNAKNTLEIGVFTGYSLLTTALALPEDGRITAIDIDKEAY-EVGLEFIKKAGVDHKINFIQSDALSALDQLLNNDPK 142 (234)
T ss_pred HHHhCCCEEEEecCcccHHHHHHHHhCCCCCEEEEEECCHHHH-HHHHHHHHHcCCCCcEEEEEccHHHHHHHHHhCCCC
Confidence 344467899999999999888777654 57899999999986 88999999988865555544433332221 13
Q ss_pred CCccEEEEcccccCCcChHHHHHHHHHHHHhcCCCCceEee
Q 026036 146 PDWDLILASDILLYVKQYSNLIKSLSVLLKSYKPKDSQVGH 186 (244)
Q Consensus 146 ~~fD~I~~~~~l~~~~~~~~l~~~l~~~~~~lk~gG~~~~~ 186 (244)
++||+|+.- .- .++....+..+.+.++|||.+++.
T Consensus 143 ~~fD~VfiD-a~-----k~~y~~~~~~~~~ll~~GG~ii~d 177 (234)
T PLN02781 143 PEFDFAFVD-AD-----KPNYVHFHEQLLKLVKVGGIIAFD 177 (234)
T ss_pred CCCCEEEEC-CC-----HHHHHHHHHHHHHhcCCCeEEEEE
Confidence 589999873 22 345558888999999999987765
|
|
| >PRK14902 16S rRNA methyltransferase B; Provisional | Back alignment and domain information |
|---|
Probab=99.29 E-value=1.1e-10 Score=102.84 Aligned_cols=111 Identities=11% Similarity=0.075 Sum_probs=77.1
Q ss_pred CcccCCeEEEeCCCCcHHHHHHHHhC--CCeEEEEeCChHHHHHHHHHhHHhcCCCCCcceEeeecCCCCCCCCCCccEE
Q 026036 74 EWIERRRCIELGSGTGALAIFLRKAM--NLDITTSDYNDQEIEDNIAYNSTTNGITPALPHIKHSWGDAFPIPNPDWDLI 151 (244)
Q Consensus 74 ~~~~~~~VLdlG~G~G~~~~~~a~~~--~~~v~~~D~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fD~I 151 (244)
...++.+|||+|||+|..++.++... ..+|+++|+++.++ +.+++|+..+++.. +..+..+..+......++||+|
T Consensus 247 ~~~~g~~VLDlgaG~G~~t~~la~~~~~~~~v~avDi~~~~l-~~~~~n~~~~g~~~-v~~~~~D~~~~~~~~~~~fD~V 324 (444)
T PRK14902 247 DPKGGDTVLDACAAPGGKTTHIAELLKNTGKVVALDIHEHKL-KLIEENAKRLGLTN-IETKALDARKVHEKFAEKFDKI 324 (444)
T ss_pred CCCCCCEEEEeCCCCCHHHHHHHHHhCCCCEEEEEeCCHHHH-HHHHHHHHHcCCCe-EEEEeCCcccccchhcccCCEE
Confidence 34577899999999999999998764 57899999999987 88888988887732 3333333322211112679999
Q ss_pred EEcccccCCc------------ChHH-------HHHHHHHHHHhcCCCCceEee
Q 026036 152 LASDILLYVK------------QYSN-------LIKSLSVLLKSYKPKDSQVGH 186 (244)
Q Consensus 152 ~~~~~l~~~~------------~~~~-------l~~~l~~~~~~lk~gG~~~~~ 186 (244)
++..+..... .... ..+.++.+.+.|||||+++.+
T Consensus 325 l~D~Pcsg~G~~~~~p~~~~~~~~~~~~~l~~~q~~iL~~a~~~LkpGG~lvys 378 (444)
T PRK14902 325 LVDAPCSGLGVIRRKPDIKYNKTKEDIESLQEIQLEILESVAQYLKKGGILVYS 378 (444)
T ss_pred EEcCCCCCCeeeccCcchhhcCCHHHHHHHHHHHHHHHHHHHHHcCCCCEEEEE
Confidence 9865421100 0011 135788999999999998865
|
|
| >COG2519 GCD14 tRNA(1-methyladenosine) methyltransferase and related methyltransferases [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=99.25 E-value=1.5e-10 Score=91.98 Aligned_cols=106 Identities=21% Similarity=0.257 Sum_probs=79.8
Q ss_pred HhhccCcccCCeEEEeCCCCcHHHHHHHHhC--CCeEEEEeCChHHHHHHHHHhHHhcCCCCCcceEeeecCCCCCCC-C
Q 026036 69 LMHHREWIERRRCIELGSGTGALAIFLRKAM--NLDITTSDYNDQEIEDNIAYNSTTNGITPALPHIKHSWGDAFPIP-N 145 (244)
Q Consensus 69 ~~~~~~~~~~~~VLdlG~G~G~~~~~~a~~~--~~~v~~~D~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~ 145 (244)
+.....+.+|++|||.|.|+|.++.+++... ..+|+..|+.++.+ +.+++|+...++.++ +.+..+|..... .
T Consensus 86 I~~~~gi~pg~rVlEAGtGSG~lt~~La~~vg~~G~v~tyE~r~d~~-k~A~~Nl~~~~l~d~---v~~~~~Dv~~~~~~ 161 (256)
T COG2519 86 IVARLGISPGSRVLEAGTGSGALTAYLARAVGPEGHVTTYEIREDFA-KTARENLSEFGLGDR---VTLKLGDVREGIDE 161 (256)
T ss_pred HHHHcCCCCCCEEEEcccCchHHHHHHHHhhCCCceEEEEEecHHHH-HHHHHHHHHhccccc---eEEEeccccccccc
Confidence 3444577899999999999999999998654 46899999999986 889999988777544 333334432222 2
Q ss_pred CCccEEEEcccccCCcChHHHHHHHHHHHHhcCCCCceEee
Q 026036 146 PDWDLILASDILLYVKQYSNLIKSLSVLLKSYKPKDSQVGH 186 (244)
Q Consensus 146 ~~fD~I~~~~~l~~~~~~~~l~~~l~~~~~~lk~gG~~~~~ 186 (244)
..||.|+. | .++..+.++.+...|||||.+++-
T Consensus 162 ~~vDav~L-D-------mp~PW~~le~~~~~Lkpgg~~~~y 194 (256)
T COG2519 162 EDVDAVFL-D-------LPDPWNVLEHVSDALKPGGVVVVY 194 (256)
T ss_pred cccCEEEE-c-------CCChHHHHHHHHHHhCCCcEEEEE
Confidence 37999886 2 345668999999999999987664
|
|
| >PRK14121 tRNA (guanine-N(7)-)-methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.25 E-value=1e-10 Score=99.72 Aligned_cols=108 Identities=16% Similarity=0.106 Sum_probs=78.2
Q ss_pred cCCeEEEeCCCCcHHHHHHHHhC-CCeEEEEeCChHHHHHHHHHhHHhcCCCCCcceEeeecCCC-CCCCCCCccEEEEc
Q 026036 77 ERRRCIELGSGTGALAIFLRKAM-NLDITTSDYNDQEIEDNIAYNSTTNGITPALPHIKHSWGDA-FPIPNPDWDLILAS 154 (244)
Q Consensus 77 ~~~~VLdlG~G~G~~~~~~a~~~-~~~v~~~D~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~fD~I~~~ 154 (244)
.+..+||||||+|...+.+|+.. ...++|+|+++.++ +.+.+++..++++ ++..+..+.... ..+.++++|.|+++
T Consensus 122 ~~p~vLEIGcGsG~~ll~lA~~~P~~~~iGIEI~~~~i-~~a~~ka~~~gL~-NV~~i~~DA~~ll~~~~~~s~D~I~ln 199 (390)
T PRK14121 122 QEKILIEIGFGSGRHLLYQAKNNPNKLFIGIEIHTPSI-EQVLKQIELLNLK-NLLIINYDARLLLELLPSNSVEKIFVH 199 (390)
T ss_pred CCCeEEEEcCcccHHHHHHHHhCCCCCEEEEECCHHHH-HHHHHHHHHcCCC-cEEEEECCHHHhhhhCCCCceeEEEEe
Confidence 45699999999999999999886 57899999999987 6777777777663 234443333221 13456789999997
Q ss_pred ccccCCcChH---HHHHHHHHHHHhcCCCCceEee
Q 026036 155 DILLYVKQYS---NLIKSLSVLLKSYKPKDSQVGH 186 (244)
Q Consensus 155 ~~l~~~~~~~---~l~~~l~~~~~~lk~gG~~~~~ 186 (244)
.+..+..... .....+++++++|+|||.+.+.
T Consensus 200 FPdPW~KkrHRRlv~~~fL~e~~RvLkpGG~l~l~ 234 (390)
T PRK14121 200 FPVPWDKKPHRRVISEDFLNEALRVLKPGGTLELR 234 (390)
T ss_pred CCCCccccchhhccHHHHHHHHHHHcCCCcEEEEE
Confidence 6652221111 1247899999999999999887
|
|
| >TIGR00438 rrmJ cell division protein FtsJ | Back alignment and domain information |
|---|
Probab=99.24 E-value=7.6e-11 Score=92.14 Aligned_cols=110 Identities=11% Similarity=0.168 Sum_probs=72.2
Q ss_pred HHHHHHhhccCcccCCeEEEeCCCCcHHHHHHHHhC--CCeEEEEeCChHHHHHHHHHhHHhcCCCCCcceEeeecCCCC
Q 026036 64 SFAEWLMHHREWIERRRCIELGSGTGALAIFLRKAM--NLDITTSDYNDQEIEDNIAYNSTTNGITPALPHIKHSWGDAF 141 (244)
Q Consensus 64 ~l~~~~~~~~~~~~~~~VLdlG~G~G~~~~~~a~~~--~~~v~~~D~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 141 (244)
.+.+.........++.+|||+|||+|.++..++... ..+|+++|+++.+ ...+ +..+..+..+..
T Consensus 19 ~~~~~~~~~~~i~~g~~VLDiG~GtG~~~~~l~~~~~~~~~v~~vDis~~~---------~~~~----i~~~~~d~~~~~ 85 (188)
T TIGR00438 19 KLLQLNQKFKLIKPGDTVLDLGAAPGGWSQVAVEQVGGKGRVIAVDLQPMK---------PIEN----VDFIRGDFTDEE 85 (188)
T ss_pred HHHHHHHHhcccCCCCEEEEecCCCCHHHHHHHHHhCCCceEEEEeccccc---------cCCC----ceEEEeeCCChh
Confidence 455555555666789999999999999998888765 4579999999843 1111 233333333211
Q ss_pred -------CCCCCCccEEEEcccccC-----C---cChHHHHHHHHHHHHhcCCCCceEee
Q 026036 142 -------PIPNPDWDLILASDILLY-----V---KQYSNLIKSLSVLLKSYKPKDSQVGH 186 (244)
Q Consensus 142 -------~~~~~~fD~I~~~~~l~~-----~---~~~~~l~~~l~~~~~~lk~gG~~~~~ 186 (244)
....++||+|++..+.+. . .......++++.+.+.|+|||++++.
T Consensus 86 ~~~~l~~~~~~~~~D~V~~~~~~~~~g~~~~~~~~~~~~~~~~l~~~~~~LkpgG~lvi~ 145 (188)
T TIGR00438 86 VLNKIRERVGDDKVDVVMSDAAPNISGYWDIDHLRSIDLVELALDIAKEVLKPKGNFVVK 145 (188)
T ss_pred HHHHHHHHhCCCCccEEEcCCCCCCCCCccccHHHHHHHHHHHHHHHHHHccCCCEEEEE
Confidence 123457999998643210 0 11122358899999999999998875
|
|
| >COG2521 Predicted archaeal methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.24 E-value=1.6e-10 Score=90.20 Aligned_cols=175 Identities=14% Similarity=0.093 Sum_probs=111.7
Q ss_pred ceEEEEecccCCCCcceeechHHHHHHHHhhccCcccCCeEEEeCCCCcHHHHHHHHhCCCeEEEEeCChHHHHHHHHHh
Q 026036 41 MELVIREFAFHQLNANFLWPGTFSFAEWLMHHREWIERRRCIELGSGTGALAIFLRKAMNLDITTSDYNDQEIEDNIAYN 120 (244)
Q Consensus 41 ~~~~~~~~~~~~~~~~~~w~~~~~l~~~~~~~~~~~~~~~VLdlG~G~G~~~~~~a~~~~~~v~~~D~~~~~l~~~~~~~ 120 (244)
+++.|.-..-+.+-+...|..+..=++. ....+|.+|||-+.|-|..++.++++++.+|..++.+++.+ +.+..|
T Consensus 102 PTiEIdGIrMhrt~~tdP~~Dt~~Kv~~----V~~~~G~rVLDtC~GLGYtAi~a~~rGA~~VitvEkdp~VL-eLa~lN 176 (287)
T COG2521 102 PTIEIDGIRMHRTKGTDPLEDTLAKVEL----VKVKRGERVLDTCTGLGYTAIEALERGAIHVITVEKDPNVL-ELAKLN 176 (287)
T ss_pred CeEEEccEEEecccCcCcHHHHHhhhhe----eccccCCEeeeeccCccHHHHHHHHcCCcEEEEEeeCCCeE-EeeccC
Confidence 4444443333333344455554333222 24557999999999999999999998777999999999876 777666
Q ss_pred HHhcCCCCCcceEeeecCCCC----CCCCCCccEEEEcccccCCcChHHHHHHHHHHHHhcCCCCceEeecccccCCCCC
Q 026036 121 STTNGITPALPHIKHSWGDAF----PIPNPDWDLILASDILLYVKQYSNLIKSLSVLLKSYKPKDSQVGHLTKNEQGEGT 196 (244)
Q Consensus 121 ~~~~~~~~~~~~~~~~~~~~~----~~~~~~fD~I~~~~~l~~~~~~~~l~~~l~~~~~~lk~gG~~~~~~~~~~~~~~~ 196 (244)
-...++... .+.+..+|.. .+.+++||+|+--.+=|.....---...-++++|+|||||+++.-+.++
T Consensus 177 PwSr~l~~~--~i~iilGD~~e~V~~~~D~sfDaIiHDPPRfS~AgeLYseefY~El~RiLkrgGrlFHYvG~P------ 248 (287)
T COG2521 177 PWSRELFEI--AIKIILGDAYEVVKDFDDESFDAIIHDPPRFSLAGELYSEEFYRELYRILKRGGRLFHYVGNP------ 248 (287)
T ss_pred CCCcccccc--ccEEecccHHHHHhcCCccccceEeeCCCccchhhhHhHHHHHHHHHHHcCcCCcEEEEeCCC------
Confidence 555444211 2344444432 3567899999864443332221122377799999999999987542221
Q ss_pred CCCCCCeEEEeeeeccCccchhhHHHHHhhcCCeEEEeccEEE
Q 026036 197 EGLPWPAFLMSWRRRIGKEDETIFFTSCENAGLEVKHLGSRVY 239 (244)
Q Consensus 197 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gf~v~~~~~~~~ 239 (244)
-++.++.+-.....+.|++.||+++..-.+.+
T Consensus 249 -----------g~ryrG~d~~~gVa~RLr~vGF~~v~~~~~~~ 280 (287)
T COG2521 249 -----------GKRYRGLDLPKGVAERLRRVGFEVVKKVREAL 280 (287)
T ss_pred -----------CcccccCChhHHHHHHHHhcCceeeeeehhcc
Confidence 22334444457888999999999766655554
|
|
| >TIGR00479 rumA 23S rRNA (uracil-5-)-methyltransferase RumA | Back alignment and domain information |
|---|
Probab=99.24 E-value=1.2e-10 Score=102.44 Aligned_cols=117 Identities=13% Similarity=0.164 Sum_probs=78.3
Q ss_pred hHHHHHHHHhhccCcccCCeEEEeCCCCcHHHHHHHHhCCCeEEEEeCChHHHHHHHHHhHHhcCCCCCcceEeeecCCC
Q 026036 61 GTFSFAEWLMHHREWIERRRCIELGSGTGALAIFLRKAMNLDITTSDYNDQEIEDNIAYNSTTNGITPALPHIKHSWGDA 140 (244)
Q Consensus 61 ~~~~l~~~~~~~~~~~~~~~VLdlG~G~G~~~~~~a~~~~~~v~~~D~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 140 (244)
.+..+.+.+.......++.+|||+|||+|.+++.+++. ..+|+++|+++.++ +.+++|+..+++. ++..+..+..+.
T Consensus 276 ~~~~l~~~~~~~l~~~~~~~vLDl~cG~G~~sl~la~~-~~~V~~vE~~~~av-~~a~~n~~~~~~~-nv~~~~~d~~~~ 352 (431)
T TIGR00479 276 QNEKLVDRALEALELQGEELVVDAYCGVGTFTLPLAKQ-AKSVVGIEVVPESV-EKAQQNAELNGIA-NVEFLAGTLETV 352 (431)
T ss_pred HHHHHHHHHHHHhccCCCCEEEEcCCCcCHHHHHHHHh-CCEEEEEEcCHHHH-HHHHHHHHHhCCC-ceEEEeCCHHHH
Confidence 34556666655555556789999999999999999876 67899999999997 8899999888773 344444333221
Q ss_pred CC---CCCCCccEEEEcccccCCcChHHHHHHHHHHHHhcCCCCceEee
Q 026036 141 FP---IPNPDWDLILASDILLYVKQYSNLIKSLSVLLKSYKPKDSQVGH 186 (244)
Q Consensus 141 ~~---~~~~~fD~I~~~~~l~~~~~~~~l~~~l~~~~~~lk~gG~~~~~ 186 (244)
++ ....+||+|++..+- . .... .+++.+.+ ++|++.++++
T Consensus 353 l~~~~~~~~~~D~vi~dPPr-~-G~~~---~~l~~l~~-l~~~~ivyvs 395 (431)
T TIGR00479 353 LPKQPWAGQIPDVLLLDPPR-K-GCAA---EVLRTIIE-LKPERIVYVS 395 (431)
T ss_pred HHHHHhcCCCCCEEEECcCC-C-CCCH---HHHHHHHh-cCCCEEEEEc
Confidence 11 223579999985552 2 1123 44454443 7787755554
|
This protein family was first proposed to be RNA methyltransferases by homology to the TrmA family. The member from E. coli has now been shown to act as the 23S RNA methyltransferase for the conserved U1939. The gene is now designated rumA and was previously designated ygcA. |
| >cd02440 AdoMet_MTases S-adenosylmethionine-dependent methyltransferases (SAM or AdoMet-MTase), class I; AdoMet-MTases are enzymes that use S-adenosyl-L-methionine (SAM or AdoMet) as a substrate for methyltransfer, creating the product S-adenosyl-L-homocysteine (AdoHcy) | Back alignment and domain information |
|---|
Probab=99.24 E-value=1.4e-10 Score=80.43 Aligned_cols=103 Identities=21% Similarity=0.253 Sum_probs=71.5
Q ss_pred eEEEeCCCCcHHHHHHHHhCCCeEEEEeCChHHHHHHHHHhHHhcCCCCCcceEeeecCCCCCCCCCCccEEEEcccccC
Q 026036 80 RCIELGSGTGALAIFLRKAMNLDITTSDYNDQEIEDNIAYNSTTNGITPALPHIKHSWGDAFPIPNPDWDLILASDILLY 159 (244)
Q Consensus 80 ~VLdlG~G~G~~~~~~a~~~~~~v~~~D~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fD~I~~~~~l~~ 159 (244)
+|+|+|||+|..+..++.....+++++|+++.++ ..+++....+. ...+..+..+..+......++||+|+++.+++.
T Consensus 1 ~ildig~G~G~~~~~~~~~~~~~~~~~d~~~~~~-~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~d~i~~~~~~~~ 78 (107)
T cd02440 1 RVLDLGCGTGALALALASGPGARVTGVDISPVAL-ELARKAAAALL-ADNVEVLKGDAEELPPEADESFDVIISDPPLHH 78 (107)
T ss_pred CeEEEcCCccHHHHHHhcCCCCEEEEEeCCHHHH-HHHHHHHhccc-ccceEEEEcChhhhccccCCceEEEEEccceee
Confidence 5899999999999888774578999999999876 55553222222 123334444443332223468999999998833
Q ss_pred CcChHHHHHHHHHHHHhcCCCCceEee
Q 026036 160 VKQYSNLIKSLSVLLKSYKPKDSQVGH 186 (244)
Q Consensus 160 ~~~~~~l~~~l~~~~~~lk~gG~~~~~ 186 (244)
. .......++.+.+.++|||.+++.
T Consensus 79 ~--~~~~~~~l~~~~~~l~~~g~~~~~ 103 (107)
T cd02440 79 L--VEDLARFLEEARRLLKPGGVLVLT 103 (107)
T ss_pred h--hhHHHHHHHHHHHHcCCCCEEEEE
Confidence 1 345568889999999999987764
|
There are at least five structurally distinct families of AdoMet-MTases, class I being the largest and most diverse. Within this class enzymes can be classified by different substrate specificities (small molecules, lipids, nucleic acids, etc.) and different target atoms for methylation (nitrogen, oxygen, carbon, sulfur, etc.). |
| >KOG1499 consensus Protein arginine N-methyltransferase PRMT1 and related enzymes [Posttranslational modification, protein turnover, chaperones; Transcription; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.23 E-value=3.4e-11 Score=99.63 Aligned_cols=112 Identities=19% Similarity=0.275 Sum_probs=81.1
Q ss_pred HhhccCcccCCeEEEeCCCCcHHHHHHHHhCCCeEEEEeCChHHHHHHHHHhHHhcCCCCCcceEeeecCCCCCCCCCCc
Q 026036 69 LMHHREWIERRRCIELGSGTGALAIFLRKAMNLDITTSDYNDQEIEDNIAYNSTTNGITPALPHIKHSWGDAFPIPNPDW 148 (244)
Q Consensus 69 ~~~~~~~~~~~~VLdlG~G~G~~~~~~a~~~~~~v~~~D~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f 148 (244)
+.++...++++.|||+|||||.+++++|+.++.+|+++|.|.- .+.+++.+..|++...+..+.....+. ..+.++.
T Consensus 52 i~~n~~lf~dK~VlDVGcGtGILS~F~akAGA~~V~aVe~S~i--a~~a~~iv~~N~~~~ii~vi~gkvEdi-~LP~eKV 128 (346)
T KOG1499|consen 52 ILQNKHLFKDKTVLDVGCGTGILSMFAAKAGARKVYAVEASSI--ADFARKIVKDNGLEDVITVIKGKVEDI-ELPVEKV 128 (346)
T ss_pred HhcchhhcCCCEEEEcCCCccHHHHHHHHhCcceEEEEechHH--HHHHHHHHHhcCccceEEEeecceEEE-ecCccce
Confidence 5556678899999999999999999999999999999999874 378888888999877666665444332 3446789
Q ss_pred cEEEEcccccCCcChHHHH-HHHHHHHHhcCCCCceE
Q 026036 149 DLILASDILLYVKQYSNLI-KSLSVLLKSYKPKDSQV 184 (244)
Q Consensus 149 D~I~~~~~l~~~~~~~~l~-~~l~~~~~~lk~gG~~~ 184 (244)
|+|++-.+=|. .-.+... ..+-+=-+.|+|||.++
T Consensus 129 DiIvSEWMGy~-Ll~EsMldsVl~ARdkwL~~~G~i~ 164 (346)
T KOG1499|consen 129 DIIVSEWMGYF-LLYESMLDSVLYARDKWLKEGGLIY 164 (346)
T ss_pred eEEeehhhhHH-HHHhhhhhhhhhhhhhccCCCceEc
Confidence 99999544321 2223222 33333347899999654
|
|
| >TIGR00095 RNA methyltransferase, RsmD family | Back alignment and domain information |
|---|
Probab=99.23 E-value=7.2e-11 Score=92.13 Aligned_cols=127 Identities=12% Similarity=-0.006 Sum_probs=79.0
Q ss_pred eeechHHHHHHHHhhcc-CcccCCeEEEeCCCCcHHHHHHHHhCCCeEEEEeCChHHHHHHHHHhHHhcCCCCCcceEee
Q 026036 57 FLWPGTFSFAEWLMHHR-EWIERRRCIELGSGTGALAIFLRKAMNLDITTSDYNDQEIEDNIAYNSTTNGITPALPHIKH 135 (244)
Q Consensus 57 ~~w~~~~~l~~~~~~~~-~~~~~~~VLdlG~G~G~~~~~~a~~~~~~v~~~D~~~~~l~~~~~~~~~~~~~~~~~~~~~~ 135 (244)
...|....+-+.+.... ...++.+|||++||+|.+++.++.++..+|+++|.++.++ +.+++|+..++...++..+..
T Consensus 28 ~~rpt~~~vrea~f~~l~~~~~g~~vLDLfaGsG~lglea~srga~~v~~vE~~~~a~-~~~~~N~~~~~~~~~~~~~~~ 106 (189)
T TIGR00095 28 STRPTTRVVRELFFNILRPEIQGAHLLDVFAGSGLLGEEALSRGAKVAFLEEDDRKAN-QTLKENLALLKSGEQAEVVRN 106 (189)
T ss_pred CCCCchHHHHHHHHHHHHHhcCCCEEEEecCCCcHHHHHHHhCCCCEEEEEeCCHHHH-HHHHHHHHHhCCcccEEEEeh
Confidence 34455544444333221 2347889999999999999999988777999999999987 888999998887544444443
Q ss_pred ecCCCCC-C-CCCC-ccEEEEcccccCCcChHHHHHHHHHHHHhcCCCCceEee
Q 026036 136 SWGDAFP-I-PNPD-WDLILASDILLYVKQYSNLIKSLSVLLKSYKPKDSQVGH 186 (244)
Q Consensus 136 ~~~~~~~-~-~~~~-fD~I~~~~~l~~~~~~~~l~~~l~~~~~~lk~gG~~~~~ 186 (244)
+..+.+. . ...+ ||+|+ .|+-|.....+.+...+.+ ...++++|.+++-
T Consensus 107 D~~~~l~~~~~~~~~~dvv~-~DPPy~~~~~~~~l~~l~~-~~~l~~~~iiv~E 158 (189)
T TIGR00095 107 SALRALKFLAKKPTFDNVIY-LDPPFFNGALQALLELCEN-NWILEDTVLIVVE 158 (189)
T ss_pred hHHHHHHHhhccCCCceEEE-ECcCCCCCcHHHHHHHHHH-CCCCCCCeEEEEE
Confidence 3322221 1 1223 55555 5666554444433333322 2467788855543
|
This model represents a family of uncharacterized bacterial proteins. Members are present in nearly every complete bacterial genome, always in a single copy. PSI-BLAST analysis shows homology to several families of SAM-dependent methyltransferases, including ribosomal RNA adenine dimethylases. |
| >PRK13943 protein-L-isoaspartate O-methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.22 E-value=2.6e-10 Score=95.80 Aligned_cols=112 Identities=14% Similarity=0.142 Sum_probs=76.0
Q ss_pred HHHHHHhhccCcccCCeEEEeCCCCcHHHHHHHHhCC--CeEEEEeCChHHHHHHHHHhHHhcCCCCCcceEeeecCCCC
Q 026036 64 SFAEWLMHHREWIERRRCIELGSGTGALAIFLRKAMN--LDITTSDYNDQEIEDNIAYNSTTNGITPALPHIKHSWGDAF 141 (244)
Q Consensus 64 ~l~~~~~~~~~~~~~~~VLdlG~G~G~~~~~~a~~~~--~~v~~~D~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 141 (244)
.+..++.+.....++.+|||+|||+|.++..+++..+ .+|+++|++++++ +.+++++..++.. ++..+..+..+..
T Consensus 67 ~l~a~ll~~L~i~~g~~VLDIG~GtG~~a~~LA~~~~~~g~VvgVDis~~~l-~~Ar~~l~~~g~~-nV~~i~gD~~~~~ 144 (322)
T PRK13943 67 SLMALFMEWVGLDKGMRVLEIGGGTGYNAAVMSRVVGEKGLVVSVEYSRKIC-EIAKRNVRRLGIE-NVIFVCGDGYYGV 144 (322)
T ss_pred HHHHHHHHhcCCCCCCEEEEEeCCccHHHHHHHHhcCCCCEEEEEECCHHHH-HHHHHHHHHcCCC-cEEEEeCChhhcc
Confidence 3444444445566788999999999999999988764 3699999999987 7888888777662 2333322221111
Q ss_pred CCCCCCccEEEEcccccCCcChHHHHHHHHHHHHhcCCCCceEeec
Q 026036 142 PIPNPDWDLILASDILLYVKQYSNLIKSLSVLLKSYKPKDSQVGHL 187 (244)
Q Consensus 142 ~~~~~~fD~I~~~~~l~~~~~~~~l~~~l~~~~~~lk~gG~~~~~~ 187 (244)
....+||+|++...+ + .....+.+.|+|||++++..
T Consensus 145 -~~~~~fD~Ii~~~g~------~---~ip~~~~~~LkpgG~Lvv~~ 180 (322)
T PRK13943 145 -PEFAPYDVIFVTVGV------D---EVPETWFTQLKEGGRVIVPI 180 (322)
T ss_pred -cccCCccEEEECCch------H---HhHHHHHHhcCCCCEEEEEe
Confidence 123579999986544 1 11234678899999988753
|
|
| >PRK14901 16S rRNA methyltransferase B; Provisional | Back alignment and domain information |
|---|
Probab=99.21 E-value=3.9e-10 Score=99.11 Aligned_cols=111 Identities=14% Similarity=0.082 Sum_probs=77.3
Q ss_pred CcccCCeEEEeCCCCcHHHHHHHHhC--CCeEEEEeCChHHHHHHHHHhHHhcCCCCCcceEeeecCCCCC---CCCCCc
Q 026036 74 EWIERRRCIELGSGTGALAIFLRKAM--NLDITTSDYNDQEIEDNIAYNSTTNGITPALPHIKHSWGDAFP---IPNPDW 148 (244)
Q Consensus 74 ~~~~~~~VLdlG~G~G~~~~~~a~~~--~~~v~~~D~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~f 148 (244)
...+|.+|||+|||+|..+..++... ..+|+++|+++.++ +.+++|+..+++.. +..+..+..+... ...++|
T Consensus 249 ~~~~g~~VLDl~ag~G~kt~~la~~~~~~g~v~a~D~~~~rl-~~~~~n~~r~g~~~-v~~~~~D~~~~~~~~~~~~~~f 326 (434)
T PRK14901 249 DPQPGEVILDACAAPGGKTTHIAELMGDQGEIWAVDRSASRL-KKLQENAQRLGLKS-IKILAADSRNLLELKPQWRGYF 326 (434)
T ss_pred CCCCcCEEEEeCCCCchhHHHHHHHhCCCceEEEEcCCHHHH-HHHHHHHHHcCCCe-EEEEeCChhhcccccccccccC
Confidence 44578899999999999999998875 45899999999987 88888988887732 3333333222111 224589
Q ss_pred cEEEEccc------ccCCcC------hH-------HHHHHHHHHHHhcCCCCceEee
Q 026036 149 DLILASDI------LLYVKQ------YS-------NLIKSLSVLLKSYKPKDSQVGH 186 (244)
Q Consensus 149 D~I~~~~~------l~~~~~------~~-------~l~~~l~~~~~~lk~gG~~~~~ 186 (244)
|.|++..+ +..+.. .. ...+.+.++.+.|||||+++.+
T Consensus 327 D~Vl~DaPCSg~G~~~r~p~~~~~~~~~~~~~l~~~Q~~iL~~a~~~lkpgG~lvys 383 (434)
T PRK14901 327 DRILLDAPCSGLGTLHRHPDARWRQTPEKIQELAPLQAELLESLAPLLKPGGTLVYA 383 (434)
T ss_pred CEEEEeCCCCcccccccCcchhhhCCHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEE
Confidence 99997432 211111 01 1347889999999999998766
|
|
| >KOG2793 consensus Putative N2,N2-dimethylguanosine tRNA methyltransferase [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.21 E-value=1.4e-10 Score=92.87 Aligned_cols=123 Identities=27% Similarity=0.490 Sum_probs=91.2
Q ss_pred cceeechHHHHHHHHhhccC------ccc-----CCeEEEeCCCCcHHHHHHHHhCCCeEEEEeCChHHHHHHHHHh---
Q 026036 55 ANFLWPGTFSFAEWLMHHRE------WIE-----RRRCIELGSGTGALAIFLRKAMNLDITTSDYNDQEIEDNIAYN--- 120 (244)
Q Consensus 55 ~~~~w~~~~~l~~~~~~~~~------~~~-----~~~VLdlG~G~G~~~~~~a~~~~~~v~~~D~~~~~l~~~~~~~--- 120 (244)
...+|+.+..++.++..+.. ... ..+|||||+|||..++.+|.....+|+.+|..... ..++.|
T Consensus 53 ~~~~w~~~~~la~~~~~~~~~~~~~~~~~g~~~~~~~vlELGsGtglvG~~aa~~~~~~v~ltD~~~~~--~~L~~~~~~ 130 (248)
T KOG2793|consen 53 SAYLWSCATTLAQPLWERRRDSELTATLIGFKTKYINVLELGSGTGLVGILAALLLGAEVVLTDLPKVV--ENLKFNRDK 130 (248)
T ss_pred eeEEeehhhccchhhhhhhcCchhhhccccccccceeEEEecCCccHHHHHHHHHhcceeccCCchhhH--HHHHHhhhh
Confidence 68899999999988876543 122 34699999999999999998889999999998642 333333
Q ss_pred --HHhcCCCCCcceEeeecCCCCCC--CCCC-ccEEEEcccccCCcChHHHHHHHHHHHHhcCCCCc
Q 026036 121 --STTNGITPALPHIKHSWGDAFPI--PNPD-WDLILASDILLYVKQYSNLIKSLSVLLKSYKPKDS 182 (244)
Q Consensus 121 --~~~~~~~~~~~~~~~~~~~~~~~--~~~~-fD~I~~~~~l~~~~~~~~l~~~l~~~~~~lk~gG~ 182 (244)
...+.....+....++|++.... ..+. ||+|+++|++|.....+.++++++.+.. .+|.
T Consensus 131 ~~~~l~~~g~~v~v~~L~Wg~~~~~~~~~~~~~DlilasDvvy~~~~~e~Lv~tla~ll~---~~~~ 194 (248)
T KOG2793|consen 131 NNIALNQLGGSVIVAILVWGNALDVSFRLPNPFDLILASDVVYEEESFEGLVKTLAFLLA---KDGT 194 (248)
T ss_pred hhhhhhhcCCceeEEEEecCCcccHhhccCCcccEEEEeeeeecCCcchhHHHHHHHHHh---cCCe
Confidence 33444444677788999977543 2334 9999999999999999988888665544 5553
|
|
| >PF01135 PCMT: Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT); InterPro: IPR000682 Protein-L-isoaspartate(D-aspartate) O-methyltransferase (2 | Back alignment and domain information |
|---|
Probab=99.20 E-value=7.7e-11 Score=93.08 Aligned_cols=113 Identities=18% Similarity=0.287 Sum_probs=75.9
Q ss_pred hHHHHHHHHhhccCcccCCeEEEeCCCCcHHHHHHHHhCC--CeEEEEeCChHHHHHHHHHhHHhcCCCCCcceEeeecC
Q 026036 61 GTFSFAEWLMHHREWIERRRCIELGSGTGALAIFLRKAMN--LDITTSDYNDQEIEDNIAYNSTTNGITPALPHIKHSWG 138 (244)
Q Consensus 61 ~~~~l~~~~~~~~~~~~~~~VLdlG~G~G~~~~~~a~~~~--~~v~~~D~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 138 (244)
+...+...+++...+.+|.+|||||||+|..+-.++...+ .+|+++|..+..+ +.+++|+...+.. .+.+..+
T Consensus 56 s~P~~~a~~l~~L~l~pg~~VLeIGtGsGY~aAlla~lvg~~g~Vv~vE~~~~l~-~~A~~~l~~~~~~----nv~~~~g 130 (209)
T PF01135_consen 56 SAPSMVARMLEALDLKPGDRVLEIGTGSGYQAALLAHLVGPVGRVVSVERDPELA-ERARRNLARLGID----NVEVVVG 130 (209)
T ss_dssp --HHHHHHHHHHTTC-TT-EEEEES-TTSHHHHHHHHHHSTTEEEEEEESBHHHH-HHHHHHHHHHTTH----SEEEEES
T ss_pred hHHHHHHHHHHHHhcCCCCEEEEecCCCcHHHHHHHHhcCccceEEEECccHHHH-HHHHHHHHHhccC----ceeEEEc
Confidence 4445555666666788999999999999999988887754 3699999999865 8888888877662 3333333
Q ss_pred CCCC-C-CCCCccEEEEcccccCCcChHHHHHHHHHHHHhcCCCCceEeec
Q 026036 139 DAFP-I-PNPDWDLILASDILLYVKQYSNLIKSLSVLLKSYKPKDSQVGHL 187 (244)
Q Consensus 139 ~~~~-~-~~~~fD~I~~~~~l~~~~~~~~l~~~l~~~~~~lk~gG~~~~~~ 187 (244)
|... . ...+||.|++.... ...+ ..+.+.|++||++++-+
T Consensus 131 dg~~g~~~~apfD~I~v~~a~---~~ip------~~l~~qL~~gGrLV~pi 172 (209)
T PF01135_consen 131 DGSEGWPEEAPFDRIIVTAAV---PEIP------EALLEQLKPGGRLVAPI 172 (209)
T ss_dssp -GGGTTGGG-SEEEEEESSBB---SS--------HHHHHTEEEEEEEEEEE
T ss_pred chhhccccCCCcCEEEEeecc---chHH------HHHHHhcCCCcEEEEEE
Confidence 3321 1 23479999998777 2333 23678899999988763
|
1.1.77 from EC) (PCMT) [] (which is also known as L-isoaspartyl protein carboxyl methyltransferase) is an enzyme that catalyses the transfer of a methyl group from S-adenosylmethionine to the free carboxyl groups of D-aspartyl or L-isoaspartyl residues in a variety of peptides and proteins. The enzyme does not act on normal L-aspartyl residues L-isoaspartyl and D-aspartyl are the products of the spontaneous deamidation and/or isomerisation of normal L-aspartyl and L-asparaginyl residues in proteins. PCMT plays a role in the repair and/or degradation of these damaged proteins; the enzymatic methyl esterification of the abnormal residues can lead to their conversion to normal L-aspartyl residues. The SAM domain is present in most of these proteins.; GO: 0004719 protein-L-isoaspartate (D-aspartate) O-methyltransferase activity, 0006464 protein modification process; PDB: 3LBF_A 1DL5_B 1JG3_B 1JG2_A 1JG1_A 1JG4_A 2YXE_A 2PBF_B 1VBF_C 1R18_A .... |
| >PRK14903 16S rRNA methyltransferase B; Provisional | Back alignment and domain information |
|---|
Probab=99.19 E-value=3.3e-10 Score=99.28 Aligned_cols=112 Identities=11% Similarity=0.049 Sum_probs=77.8
Q ss_pred CcccCCeEEEeCCCCcHHHHHHHHhC--CCeEEEEeCChHHHHHHHHHhHHhcCCCCCcceEeeecCCCCCCCCCCccEE
Q 026036 74 EWIERRRCIELGSGTGALAIFLRKAM--NLDITTSDYNDQEIEDNIAYNSTTNGITPALPHIKHSWGDAFPIPNPDWDLI 151 (244)
Q Consensus 74 ~~~~~~~VLdlG~G~G~~~~~~a~~~--~~~v~~~D~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fD~I 151 (244)
.+.+|.+|||+|||+|..+.+++... ..+|+++|+++.++ +.+++|+...+++ .+..+..+..+......++||.|
T Consensus 234 ~~~~g~~VLD~cagpGgkt~~la~~~~~~g~V~a~Dis~~rl-~~~~~n~~r~g~~-~v~~~~~Da~~l~~~~~~~fD~V 311 (431)
T PRK14903 234 ELEPGLRVLDTCAAPGGKTTAIAELMKDQGKILAVDISREKI-QLVEKHAKRLKLS-SIEIKIADAERLTEYVQDTFDRI 311 (431)
T ss_pred CCCCCCEEEEeCCCccHHHHHHHHHcCCCCEEEEEECCHHHH-HHHHHHHHHcCCC-eEEEEECchhhhhhhhhccCCEE
Confidence 44578899999999999999988775 57899999999997 8888888887763 23333333222111234679999
Q ss_pred EEcccccCC---cChH----------------HHHHHHHHHHHhcCCCCceEeec
Q 026036 152 LASDILLYV---KQYS----------------NLIKSLSVLLKSYKPKDSQVGHL 187 (244)
Q Consensus 152 ~~~~~l~~~---~~~~----------------~l~~~l~~~~~~lk~gG~~~~~~ 187 (244)
++..+.... ...+ ...+.+.++.+.|||||+++.++
T Consensus 312 l~DaPCsg~G~~~~~p~~~~~~~~~~~~~l~~~Q~~iL~~a~~~LkpGG~LvYsT 366 (431)
T PRK14903 312 LVDAPCTSLGTARNHPEVLRRVNKEDFKKLSEIQLRIVSQAWKLLEKGGILLYST 366 (431)
T ss_pred EECCCCCCCccccCChHHHHhCCHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEE
Confidence 974332110 0001 12467889999999999988773
|
|
| >TIGR00478 tly hemolysin TlyA family protein | Back alignment and domain information |
|---|
Probab=99.18 E-value=1.8e-10 Score=92.04 Aligned_cols=159 Identities=14% Similarity=0.071 Sum_probs=94.1
Q ss_pred eeechHHHHHHHHhhccCcccCCeEEEeCCCCcHHHHHHHHhCCCeEEEEeCChHHHHHHHHHhHHhc--CCCCCcceEe
Q 026036 57 FLWPGTFSFAEWLMHHREWIERRRCIELGSGTGALAIFLRKAMNLDITTSDYNDQEIEDNIAYNSTTN--GITPALPHIK 134 (244)
Q Consensus 57 ~~w~~~~~l~~~~~~~~~~~~~~~VLdlG~G~G~~~~~~a~~~~~~v~~~D~~~~~l~~~~~~~~~~~--~~~~~~~~~~ 134 (244)
+++.++..|...+.......++.+|||+|||+|.++..+++.+..+|+++|++++|+...++.+.... +.. + ...
T Consensus 55 ~vsr~~~kL~~~l~~~~~~~~~~~vlDiG~gtG~~t~~l~~~ga~~v~avD~~~~~l~~~l~~~~~v~~~~~~-n--i~~ 131 (228)
T TIGR00478 55 FVSRGGEKLKEALEEFNIDVKNKIVLDVGSSTGGFTDCALQKGAKEVYGVDVGYNQLAEKLRQDERVKVLERT-N--IRY 131 (228)
T ss_pred hhhhhHHHHHHHHHhcCCCCCCCEEEEcccCCCHHHHHHHHcCCCEEEEEeCCHHHHHHHHhcCCCeeEeecC-C--ccc
Confidence 56678888888887766556888999999999999999998877789999999988755454443210 110 1 112
Q ss_pred eecCCCCCCCCCCccEEEEcccccCCcChHHHHHHHHHHHHhcCCCCceEee-cccccCCCCCCCCCCCeEEEeeeeccC
Q 026036 135 HSWGDAFPIPNPDWDLILASDILLYVKQYSNLIKSLSVLLKSYKPKDSQVGH-LTKNEQGEGTEGLPWPAFLMSWRRRIG 213 (244)
Q Consensus 135 ~~~~~~~~~~~~~fD~I~~~~~l~~~~~~~~l~~~l~~~~~~lk~gG~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~ 213 (244)
..|.+.. ..-..+|+++++.. ..+..+.+.|+| |.+++. -+.++-..... ..... ......+..
T Consensus 132 ~~~~~~~-~d~~~~DvsfiS~~-----------~~l~~i~~~l~~-~~~~~L~KPqFE~~~~~~-~~~gi-v~~~~~~~~ 196 (228)
T TIGR00478 132 VTPADIF-PDFATFDVSFISLI-----------SILPELDLLLNP-NDLTLLFKPQFEAGREKK-NKKGV-VRDKEAIAL 196 (228)
T ss_pred CCHhHcC-CCceeeeEEEeehH-----------hHHHHHHHHhCc-CeEEEEcChHhhhcHhhc-CcCCe-ecCHHHHHH
Confidence 3343321 11125666555432 346678888899 766655 33332211111 00011 111111111
Q ss_pred ccchhhHHHHHhhcCCeEEEec
Q 026036 214 KEDETIFFTSCENAGLEVKHLG 235 (244)
Q Consensus 214 ~~~~~~~~~~l~~~Gf~v~~~~ 235 (244)
-...+...+.+.||++..+.
T Consensus 197 --~~~~~~~~~~~~~~~~~~~~ 216 (228)
T TIGR00478 197 --ALHKVIDKGESPDFQEKKII 216 (228)
T ss_pred --HHHHHHHHHHcCCCeEeeEE
Confidence 13566777888899887653
|
Hemolysins are exotoxins that attack blood cell membranes and cause cell rupture, often by forming a pore in the membrane. At least two members of this protein family have been characterized indirectly as pore-forming hemolysins, one from the spirochete Serpula (Treponema) hyodysenteriae and one from Mycobacterium tuberculosis. However, homology domains in this protein suggest methyltransferase activity (pfam01728) and RNA-binding activity (pfam01479). |
| >PF08704 GCD14: tRNA methyltransferase complex GCD14 subunit; InterPro: IPR014816 GCD14 is a subunit of the tRNA methyltransferase complex and is required for 1-methyladenosine modification and maturation of initiator methionyl-tRNA [] | Back alignment and domain information |
|---|
Probab=99.18 E-value=2.5e-10 Score=92.10 Aligned_cols=142 Identities=14% Similarity=0.222 Sum_probs=95.2
Q ss_pred HhhccCcccCCeEEEeCCCCcHHHHHHHHhC--CCeEEEEeCChHHHHHHHHHhHHhcCCCCCcceEeeecCC-CCC-CC
Q 026036 69 LMHHREWIERRRCIELGSGTGALAIFLRKAM--NLDITTSDYNDQEIEDNIAYNSTTNGITPALPHIKHSWGD-AFP-IP 144 (244)
Q Consensus 69 ~~~~~~~~~~~~VLdlG~G~G~~~~~~a~~~--~~~v~~~D~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~-~~ 144 (244)
+.....+.+|.+|||-|.|+|.++.++++.. ..+|+..|+.++.+ +.+++|....++...+....-|..+ ... ..
T Consensus 32 I~~~l~i~pG~~VlEaGtGSG~lt~~l~r~v~p~G~v~t~E~~~~~~-~~A~~n~~~~gl~~~v~~~~~Dv~~~g~~~~~ 110 (247)
T PF08704_consen 32 ILMRLDIRPGSRVLEAGTGSGSLTHALARAVGPTGHVYTYEFREDRA-EKARKNFERHGLDDNVTVHHRDVCEEGFDEEL 110 (247)
T ss_dssp HHHHTT--TT-EEEEE--TTSHHHHHHHHHHTTTSEEEEEESSHHHH-HHHHHHHHHTTCCTTEEEEES-GGCG--STT-
T ss_pred HHHHcCCCCCCEEEEecCCcHHHHHHHHHHhCCCeEEEccccCHHHH-HHHHHHHHHcCCCCCceeEecceecccccccc
Confidence 4445678899999999999999999998765 46899999999986 8899999998886655555555532 221 12
Q ss_pred CCCccEEEEcccccCCcChHHHHHHHHHHHHhc-CCCCceEeecccccCCCCCCCCCCCeEEEeeeeccCccchhhHHHH
Q 026036 145 NPDWDLILASDILLYVKQYSNLIKSLSVLLKSY-KPKDSQVGHLTKNEQGEGTEGLPWPAFLMSWRRRIGKEDETIFFTS 223 (244)
Q Consensus 145 ~~~fD~I~~~~~l~~~~~~~~l~~~l~~~~~~l-k~gG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 223 (244)
...+|.|+. |+- +....+..+.+.| ++||++++. .+... ......+.
T Consensus 111 ~~~~DavfL-Dlp-------~Pw~~i~~~~~~L~~~gG~i~~f----------------------sP~ie--Qv~~~~~~ 158 (247)
T PF08704_consen 111 ESDFDAVFL-DLP-------DPWEAIPHAKRALKKPGGRICCF----------------------SPCIE--QVQKTVEA 158 (247)
T ss_dssp TTSEEEEEE-ESS-------SGGGGHHHHHHHE-EEEEEEEEE----------------------ESSHH--HHHHHHHH
T ss_pred cCcccEEEE-eCC-------CHHHHHHHHHHHHhcCCceEEEE----------------------CCCHH--HHHHHHHH
Confidence 357999886 332 3336778889999 899976653 22222 24677788
Q ss_pred HhhcCCeEEE---eccEEEEEec
Q 026036 224 CENAGLEVKH---LGSRVYCIKL 243 (244)
Q Consensus 224 l~~~Gf~v~~---~~~~~~~~~~ 243 (244)
|+++||...+ +-.|.|-+.+
T Consensus 159 L~~~gf~~i~~~Evl~R~~~v~~ 181 (247)
T PF08704_consen 159 LREHGFTDIETVEVLLREWEVRP 181 (247)
T ss_dssp HHHTTEEEEEEEEEEEEEEEEET
T ss_pred HHHCCCeeeEEEEEEeeEEEEEe
Confidence 9999996543 3455565543
|
; GO: 0016429 tRNA (adenine-N1-)-methyltransferase activity, 0030488 tRNA methylation; PDB: 2YVL_C 1YB2_A 2B25_B 1O54_A 2PWY_B 1I9G_A 3LGA_B 3LHD_C 3MB5_A. |
| >PRK04457 spermidine synthase; Provisional | Back alignment and domain information |
|---|
Probab=99.18 E-value=1.2e-10 Score=95.55 Aligned_cols=107 Identities=15% Similarity=0.098 Sum_probs=73.0
Q ss_pred cCCeEEEeCCCCcHHHHHHHHhC-CCeEEEEeCChHHHHHHHHHhHHhcCCCCCcceEeeecCCCCCCCCCCccEEEEcc
Q 026036 77 ERRRCIELGSGTGALAIFLRKAM-NLDITTSDYNDQEIEDNIAYNSTTNGITPALPHIKHSWGDAFPIPNPDWDLILASD 155 (244)
Q Consensus 77 ~~~~VLdlG~G~G~~~~~~a~~~-~~~v~~~D~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fD~I~~~~ 155 (244)
++.+|||||||+|.++..+++.. ..+|+++|++++++ +.++++...+....++..+..+..+.+....++||+|++ |
T Consensus 66 ~~~~vL~IG~G~G~l~~~l~~~~p~~~v~~VEidp~vi-~~A~~~f~~~~~~~rv~v~~~Da~~~l~~~~~~yD~I~~-D 143 (262)
T PRK04457 66 RPQHILQIGLGGGSLAKFIYTYLPDTRQTAVEINPQVI-AVARNHFELPENGERFEVIEADGAEYIAVHRHSTDVILV-D 143 (262)
T ss_pred CCCEEEEECCCHhHHHHHHHHhCCCCeEEEEECCHHHH-HHHHHHcCCCCCCCceEEEECCHHHHHHhCCCCCCEEEE-e
Confidence 45799999999999999887765 67899999999987 777777554333233333332222222223458999997 3
Q ss_pred cccCCcChH---HHHHHHHHHHHhcCCCCceEee
Q 026036 156 ILLYVKQYS---NLIKSLSVLLKSYKPKDSQVGH 186 (244)
Q Consensus 156 ~l~~~~~~~---~l~~~l~~~~~~lk~gG~~~~~ 186 (244)
.+ .....+ .....++.+.+.|+|||++++.
T Consensus 144 ~~-~~~~~~~~l~t~efl~~~~~~L~pgGvlvin 176 (262)
T PRK04457 144 GF-DGEGIIDALCTQPFFDDCRNALSSDGIFVVN 176 (262)
T ss_pred CC-CCCCCccccCcHHHHHHHHHhcCCCcEEEEE
Confidence 32 322111 1248899999999999998875
|
|
| >PHA03412 putative methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.17 E-value=8.8e-10 Score=87.62 Aligned_cols=95 Identities=14% Similarity=0.100 Sum_probs=64.6
Q ss_pred cCCeEEEeCCCCcHHHHHHHHhC----CCeEEEEeCChHHHHHHHHHhHHhcCCCCCcceEeeecCCCCCC-CCCCccEE
Q 026036 77 ERRRCIELGSGTGALAIFLRKAM----NLDITTSDYNDQEIEDNIAYNSTTNGITPALPHIKHSWGDAFPI-PNPDWDLI 151 (244)
Q Consensus 77 ~~~~VLdlG~G~G~~~~~~a~~~----~~~v~~~D~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~fD~I 151 (244)
.+.+|||+|||+|.+++.++++. ..+|+++|+++.++ +.+++|... +..+ ++|.... .+++||+|
T Consensus 49 ~~grVLDlG~GSG~Lalala~~~~~~~~~~V~aVEID~~Al-~~Ar~n~~~------~~~~---~~D~~~~~~~~~FDlI 118 (241)
T PHA03412 49 TSGSVVDLCAGIGGLSFAMVHMMMYAKPREIVCVELNHTYY-KLGKRIVPE------ATWI---NADALTTEFDTLFDMA 118 (241)
T ss_pred CCCEEEEccChHHHHHHHHHHhcccCCCcEEEEEECCHHHH-HHHHhhccC------CEEE---EcchhcccccCCccEE
Confidence 36799999999999999988753 45899999999987 777766421 1222 2333221 24589999
Q ss_pred EEcccccCCcC---------hHHHHHHHHHHHHhcCCCC
Q 026036 152 LASDILLYVKQ---------YSNLIKSLSVLLKSYKPKD 181 (244)
Q Consensus 152 ~~~~~l~~~~~---------~~~l~~~l~~~~~~lk~gG 181 (244)
|+|.+++.... .....+.++.+.+++++|+
T Consensus 119 IsNPPY~~~~~~d~~ar~~g~~~~~~li~~A~~Ll~~G~ 157 (241)
T PHA03412 119 ISNPPFGKIKTSDFKGKYTGAEFEYKVIERASQIARQGT 157 (241)
T ss_pred EECCCCCCccccccCCcccccHHHHHHHHHHHHHcCCCE
Confidence 99999852211 1223467788888666554
|
|
| >TIGR00563 rsmB ribosomal RNA small subunit methyltransferase RsmB | Back alignment and domain information |
|---|
Probab=99.16 E-value=4.5e-10 Score=98.54 Aligned_cols=119 Identities=14% Similarity=0.160 Sum_probs=80.4
Q ss_pred hHHHHHHHHhhccCcccCCeEEEeCCCCcHHHHHHHHhC-CCeEEEEeCChHHHHHHHHHhHHhcCCCCCcceEeeecCC
Q 026036 61 GTFSFAEWLMHHREWIERRRCIELGSGTGALAIFLRKAM-NLDITTSDYNDQEIEDNIAYNSTTNGITPALPHIKHSWGD 139 (244)
Q Consensus 61 ~~~~l~~~~~~~~~~~~~~~VLdlG~G~G~~~~~~a~~~-~~~v~~~D~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 139 (244)
++..++..+ .+.+|.+|||+|||+|..+..+++.. ..+|+++|+++.++ +.+++|+...++. +. +....++
T Consensus 226 ~s~~~~~~L----~~~~g~~VLDlcag~G~kt~~la~~~~~~~v~a~D~~~~~l-~~~~~n~~r~g~~--~~-v~~~~~d 297 (426)
T TIGR00563 226 SAQWVATWL----APQNEETILDACAAPGGKTTHILELAPQAQVVALDIHEHRL-KRVYENLKRLGLT--IK-AETKDGD 297 (426)
T ss_pred HHHHHHHHh----CCCCCCeEEEeCCCccHHHHHHHHHcCCCeEEEEeCCHHHH-HHHHHHHHHcCCC--eE-EEEeccc
Confidence 344444443 44578899999999999999998865 47899999999987 8888898887773 11 1112222
Q ss_pred CC--CC--CCCCccEEEEcc------cccCCcC------hH-------HHHHHHHHHHHhcCCCCceEeec
Q 026036 140 AF--PI--PNPDWDLILASD------ILLYVKQ------YS-------NLIKSLSVLLKSYKPKDSQVGHL 187 (244)
Q Consensus 140 ~~--~~--~~~~fD~I~~~~------~l~~~~~------~~-------~l~~~l~~~~~~lk~gG~~~~~~ 187 (244)
.. +. ..++||.|++.. ++..+.. .. ...+.+.++.++|||||++++++
T Consensus 298 ~~~~~~~~~~~~fD~VllDaPcSg~G~~~~~p~~~~~~~~~~~~~l~~lQ~~lL~~a~~~LkpgG~lvyst 368 (426)
T TIGR00563 298 GRGPSQWAENEQFDRILLDAPCSATGVIRRHPDIKWLRKPRDIAELAELQSEILDAIWPLLKTGGTLVYAT 368 (426)
T ss_pred cccccccccccccCEEEEcCCCCCCcccccCcchhhcCCHHHHHHHHHHHHHHHHHHHHhcCCCcEEEEEe
Confidence 21 11 345799999632 2211111 00 12478899999999999998873
|
The seed alignment is built from bacterial sequences only. Eukaryotic homologs include Nop2, a protein required for processing pre-rRNA, that is likely also a rRNA methyltransferase, although the fine specificity may differ. Cutoff scores are set to avoid treating archaeal and eukaroytic homologs automatically as functionally equivalent, although they may have very similar roles. |
| >PRK14904 16S rRNA methyltransferase B; Provisional | Back alignment and domain information |
|---|
Probab=99.16 E-value=1.4e-09 Score=95.84 Aligned_cols=125 Identities=20% Similarity=0.126 Sum_probs=82.3
Q ss_pred ceeechHHHHHHHHhhccCcccCCeEEEeCCCCcHHHHHHHHhC--CCeEEEEeCChHHHHHHHHHhHHhcCCCCCcceE
Q 026036 56 NFLWPGTFSFAEWLMHHREWIERRRCIELGSGTGALAIFLRKAM--NLDITTSDYNDQEIEDNIAYNSTTNGITPALPHI 133 (244)
Q Consensus 56 ~~~w~~~~~l~~~~~~~~~~~~~~~VLdlG~G~G~~~~~~a~~~--~~~v~~~D~~~~~l~~~~~~~~~~~~~~~~~~~~ 133 (244)
..+++.+..++..++ ...+|.+|||+|||+|..+..++... ..+|+++|+++.++ +.+++|+...++. .+..+
T Consensus 232 ~~vqd~~s~l~~~~l---~~~~g~~VLDlgaG~G~kt~~la~~~~~~~~V~avD~s~~~l-~~~~~~~~~~g~~-~v~~~ 306 (445)
T PRK14904 232 VSVQNPTQALACLLL---NPQPGSTVLDLCAAPGGKSTFMAELMQNRGQITAVDRYPQKL-EKIRSHASALGIT-IIETI 306 (445)
T ss_pred EEEeCHHHHHHHHhc---CCCCCCEEEEECCCCCHHHHHHHHHhCCCcEEEEEECCHHHH-HHHHHHHHHhCCC-eEEEE
Confidence 345554555544443 34578899999999999998887654 46899999999997 8888888877763 23333
Q ss_pred eeecCCCCCCCCCCccEEEEccc------ccCC------cChH-------HHHHHHHHHHHhcCCCCceEeec
Q 026036 134 KHSWGDAFPIPNPDWDLILASDI------LLYV------KQYS-------NLIKSLSVLLKSYKPKDSQVGHL 187 (244)
Q Consensus 134 ~~~~~~~~~~~~~~fD~I~~~~~------l~~~------~~~~-------~l~~~l~~~~~~lk~gG~~~~~~ 187 (244)
..+..+. ...++||+|++-.+ +..+ .... ...+.+.++.+.|||||++++++
T Consensus 307 ~~Da~~~--~~~~~fD~Vl~D~Pcsg~g~~~r~p~~~~~~~~~~~~~l~~~q~~iL~~a~~~lkpgG~lvyst 377 (445)
T PRK14904 307 EGDARSF--SPEEQPDAILLDAPCTGTGVLGRRAELRWKLTPEKLAELVGLQAELLDHAASLLKPGGVLVYAT 377 (445)
T ss_pred eCccccc--ccCCCCCEEEEcCCCCCcchhhcCcchhhcCCHHHHHHHHHHHHHHHHHHHHhcCCCcEEEEEe
Confidence 3222221 13457999996211 1100 0111 12368899999999999998884
|
|
| >smart00650 rADc Ribosomal RNA adenine dimethylases | Back alignment and domain information |
|---|
Probab=99.13 E-value=4.5e-10 Score=86.27 Aligned_cols=110 Identities=14% Similarity=0.096 Sum_probs=69.0
Q ss_pred HHHhhccCcccCCeEEEeCCCCcHHHHHHHHhCCCeEEEEeCChHHHHHHHHHhHHhcCCCCCcceEeeecCCCCCCCCC
Q 026036 67 EWLMHHREWIERRRCIELGSGTGALAIFLRKAMNLDITTSDYNDQEIEDNIAYNSTTNGITPALPHIKHSWGDAFPIPNP 146 (244)
Q Consensus 67 ~~~~~~~~~~~~~~VLdlG~G~G~~~~~~a~~~~~~v~~~D~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 146 (244)
+.+.+.....++.+|||+|||+|.++..++.. +.+|+++|+++.++ +.++++.... .++..+..+..+ .+....
T Consensus 3 ~~i~~~~~~~~~~~vLEiG~G~G~lt~~l~~~-~~~v~~vE~~~~~~-~~~~~~~~~~---~~v~ii~~D~~~-~~~~~~ 76 (169)
T smart00650 3 DKIVRAANLRPGDTVLEIGPGKGALTEELLER-AARVTAIEIDPRLA-PRLREKFAAA---DNLTVIHGDALK-FDLPKL 76 (169)
T ss_pred HHHHHhcCCCCcCEEEEECCCccHHHHHHHhc-CCeEEEEECCHHHH-HHHHHHhccC---CCEEEEECchhc-CCcccc
Confidence 34444455567789999999999999999887 78999999999987 7777765431 223333332221 223334
Q ss_pred CccEEEEcccccCCcChHHHHHHHHHHHHhcCCCCceEee
Q 026036 147 DWDLILASDILLYVKQYSNLIKSLSVLLKSYKPKDSQVGH 186 (244)
Q Consensus 147 ~fD~I~~~~~l~~~~~~~~l~~~l~~~~~~lk~gG~~~~~ 186 (244)
+||.|+++.++ +. ..+.+.+.++.. .+.++|.+++.
T Consensus 77 ~~d~vi~n~Py-~~-~~~~i~~~l~~~--~~~~~~~l~~q 112 (169)
T smart00650 77 QPYKVVGNLPY-NI-STPILFKLLEEP--PAFRDAVLMVQ 112 (169)
T ss_pred CCCEEEECCCc-cc-HHHHHHHHHhcC--CCcceEEEEEE
Confidence 69999997664 43 223333333321 23466766555
|
|
| >TIGR00446 nop2p NOL1/NOP2/sun family putative RNA methylase | Back alignment and domain information |
|---|
Probab=99.12 E-value=1.5e-09 Score=89.21 Aligned_cols=110 Identities=14% Similarity=0.125 Sum_probs=76.3
Q ss_pred CcccCCeEEEeCCCCcHHHHHHHHhC--CCeEEEEeCChHHHHHHHHHhHHhcCCCCCcceEeeecCCCCCCCCCCccEE
Q 026036 74 EWIERRRCIELGSGTGALAIFLRKAM--NLDITTSDYNDQEIEDNIAYNSTTNGITPALPHIKHSWGDAFPIPNPDWDLI 151 (244)
Q Consensus 74 ~~~~~~~VLdlG~G~G~~~~~~a~~~--~~~v~~~D~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fD~I 151 (244)
.+.+|.+|||+|||+|..+..++... ..+|+++|+++.++ +.+++|+..+++. .+..+..+.. ..+...+.||.|
T Consensus 68 ~~~~g~~VLDl~ag~G~kt~~la~~~~~~g~v~a~D~~~~~l-~~~~~n~~~~g~~-~v~~~~~D~~-~~~~~~~~fD~V 144 (264)
T TIGR00446 68 EPDPPERVLDMAAAPGGKTTQISALMKNEGAIVANEFSKSRT-KVLIANINRCGVL-NVAVTNFDGR-VFGAAVPKFDAI 144 (264)
T ss_pred CCCCcCEEEEECCCchHHHHHHHHHcCCCCEEEEEcCCHHHH-HHHHHHHHHcCCC-cEEEecCCHH-HhhhhccCCCEE
Confidence 34578899999999999999988765 35899999999987 8888898888763 2333322221 122223469999
Q ss_pred EEcccccCC------------cChH-------HHHHHHHHHHHhcCCCCceEee
Q 026036 152 LASDILLYV------------KQYS-------NLIKSLSVLLKSYKPKDSQVGH 186 (244)
Q Consensus 152 ~~~~~l~~~------------~~~~-------~l~~~l~~~~~~lk~gG~~~~~ 186 (244)
++..+.... .... ...+.++.+.+.|||||+++.+
T Consensus 145 l~D~Pcsg~G~~~~~p~~~~~~~~~~~~~l~~~q~~iL~~a~~~lkpgG~lvYs 198 (264)
T TIGR00446 145 LLDAPCSGEGVIRKDPSRKKNWSEEDIQEISALQKELIDSAFDALKPGGVLVYS 198 (264)
T ss_pred EEcCCCCCCcccccChhhhhcCCHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEE
Confidence 975432110 0011 1236888999999999998877
|
|
| >PF05724 TPMT: Thiopurine S-methyltransferase (TPMT); InterPro: IPR008854 This family consists of thiopurine S-methyltransferase proteins from both eukaryotes and prokaryotes | Back alignment and domain information |
|---|
Probab=99.12 E-value=1.8e-09 Score=85.94 Aligned_cols=158 Identities=21% Similarity=0.214 Sum_probs=98.0
Q ss_pred hHHHHHHHHhhccCcccCCeEEEeCCCCcHHHHHHHHhCCCeEEEEeCChHHHHHHHHHhHHhcCCCC-------CcceE
Q 026036 61 GTFSFAEWLMHHREWIERRRCIELGSGTGALAIFLRKAMNLDITTSDYNDQEIEDNIAYNSTTNGITP-------ALPHI 133 (244)
Q Consensus 61 ~~~~l~~~~~~~~~~~~~~~VLdlG~G~G~~~~~~a~~~~~~v~~~D~~~~~l~~~~~~~~~~~~~~~-------~~~~~ 133 (244)
....|.+++.. ....++.+||..|||.|.-...+|.+ +.+|+|+|+|+.++....+++........ ....+
T Consensus 22 ~~p~L~~~~~~-l~~~~~~rvLvPgCG~g~D~~~La~~-G~~VvGvDls~~Ai~~~~~e~~~~~~~~~~~~~~~~~~~~i 99 (218)
T PF05724_consen 22 PNPALVEYLDS-LALKPGGRVLVPGCGKGYDMLWLAEQ-GHDVVGVDLSPTAIEQAFEENNLEPTVTSVGGFKRYQAGRI 99 (218)
T ss_dssp STHHHHHHHHH-HTTSTSEEEEETTTTTSCHHHHHHHT-TEEEEEEES-HHHHHHHHHHCTTEEECTTCTTEEEETTSSE
T ss_pred CCHHHHHHHHh-cCCCCCCeEEEeCCCChHHHHHHHHC-CCeEEEEecCHHHHHHHHHHhccCCCcccccceeeecCCce
Confidence 35667777665 34456779999999999999999987 77999999999988444344432111110 11123
Q ss_pred eeecCCCCCCC---CCCccEEEEcccccCCcChHHHHHHHHHHHHhcCCCCceEeecccccCCCCCCCCCCCeEEEeeee
Q 026036 134 KHSWGDAFPIP---NPDWDLILASDILLYVKQYSNLIKSLSVLLKSYKPKDSQVGHLTKNEQGEGTEGLPWPAFLMSWRR 210 (244)
Q Consensus 134 ~~~~~~~~~~~---~~~fD~I~~~~~l~~~~~~~~l~~~l~~~~~~lk~gG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 210 (244)
.+-.+|.+... .++||+|+=..++ .........+..+.+.++|+|||++++.+...+..... ..|
T Consensus 100 ~~~~gDfF~l~~~~~g~fD~iyDr~~l-~Alpp~~R~~Ya~~l~~ll~p~g~~lLi~l~~~~~~~~---GPP-------- 167 (218)
T PF05724_consen 100 TIYCGDFFELPPEDVGKFDLIYDRTFL-CALPPEMRERYAQQLASLLKPGGRGLLITLEYPQGEME---GPP-------- 167 (218)
T ss_dssp EEEES-TTTGGGSCHHSEEEEEECSST-TTS-GGGHHHHHHHHHHCEEEEEEEEEEEEES-CSCSS---SSS--------
T ss_pred EEEEcccccCChhhcCCceEEEEeccc-ccCCHHHHHHHHHHHHHHhCCCCcEEEEEEEcCCcCCC---CcC--------
Confidence 44445554432 2479999987776 55555667799999999999999955553332221111 112
Q ss_pred ccCccchhhHHHHHhhcCCeEEEec
Q 026036 211 RIGKEDETIFFTSCENAGLEVKHLG 235 (244)
Q Consensus 211 ~~~~~~~~~~~~~l~~~Gf~v~~~~ 235 (244)
+.. +.+++.+++. .+|+++.+.
T Consensus 168 -f~v-~~~ev~~l~~-~~f~i~~l~ 189 (218)
T PF05724_consen 168 -FSV-TEEEVRELFG-PGFEIEELE 189 (218)
T ss_dssp ------HHHHHHHHT-TTEEEEEEE
T ss_pred -CCC-CHHHHHHHhc-CCcEEEEEe
Confidence 111 2356666666 778887765
|
Thiopurine S-methyltransferase (TPMT) is a cytosolic enzyme that catalyses S-methylation of aromatic and heterocyclic sulphydryl compounds, including anticancer and immunosuppressive thiopurines [].; GO: 0008119 thiopurine S-methyltransferase activity, 0008152 metabolic process, 0005737 cytoplasm; PDB: 1PJZ_A 2H11_A 2BZG_A 3LCC_A 3BGD_A 2GB4_A 3BGI_B. |
| >KOG3010 consensus Methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.11 E-value=2.3e-10 Score=89.95 Aligned_cols=100 Identities=10% Similarity=0.051 Sum_probs=67.9
Q ss_pred eEEEeCCCCcHHHHHHHHhCCCeEEEEeCChHHHHHHHHHhHHhcCCCCCcceEeeecCCCCCC--CCCCccEEEEcccc
Q 026036 80 RCIELGSGTGALAIFLRKAMNLDITTSDYNDQEIEDNIAYNSTTNGITPALPHIKHSWGDAFPI--PNPDWDLILASDIL 157 (244)
Q Consensus 80 ~VLdlG~G~G~~~~~~a~~~~~~v~~~D~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~fD~I~~~~~l 157 (244)
.++|+|||+|..++.++.. ..+|+|+|+|+.|| +.+++.-..... .....+...+..++ .+++.|+|++.-++
T Consensus 36 ~a~DvG~G~Gqa~~~iae~-~k~VIatD~s~~mL-~~a~k~~~~~y~---~t~~~ms~~~~v~L~g~e~SVDlI~~Aqa~ 110 (261)
T KOG3010|consen 36 LAWDVGTGNGQAARGIAEH-YKEVIATDVSEAML-KVAKKHPPVTYC---HTPSTMSSDEMVDLLGGEESVDLITAAQAV 110 (261)
T ss_pred eEEEeccCCCcchHHHHHh-hhhheeecCCHHHH-HHhhcCCCcccc---cCCccccccccccccCCCcceeeehhhhhH
Confidence 8999999999778888765 78899999999998 655542211100 00111222222233 36799999999999
Q ss_pred cCCcChHHHHHHHHHHHHhcCCCC-ceEeecc
Q 026036 158 LYVKQYSNLIKSLSVLLKSYKPKD-SQVGHLT 188 (244)
Q Consensus 158 ~~~~~~~~l~~~l~~~~~~lk~gG-~~~~~~~ 188 (244)
|+.+.+ +..+.+.|+||+.| .+++=.+
T Consensus 111 -HWFdle---~fy~~~~rvLRk~Gg~iavW~Y 138 (261)
T KOG3010|consen 111 -HWFDLE---RFYKEAYRVLRKDGGLIAVWNY 138 (261)
T ss_pred -HhhchH---HHHHHHHHHcCCCCCEEEEEEc
Confidence 666555 88899999999876 4444333
|
|
| >KOG3420 consensus Predicted RNA methylase [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=99.11 E-value=2e-10 Score=83.18 Aligned_cols=110 Identities=15% Similarity=0.183 Sum_probs=77.7
Q ss_pred ccCCceEEEEecccCCCCcceeechHHHHHHHHhhccCcccCCeEEEeCCCCcHHHHHHHHhCCCeEEEEeCChHHHHHH
Q 026036 37 QFPEMELVIREFAFHQLNANFLWPGTFSFAEWLMHHREWIERRRCIELGSGTGALAIFLRKAMNLDITTSDYNDQEIEDN 116 (244)
Q Consensus 37 ~~~~~~~~~~~~~~~~~~~~~~w~~~~~l~~~~~~~~~~~~~~~VLdlG~G~G~~~~~~a~~~~~~v~~~D~~~~~l~~~ 116 (244)
-|....+.+.|+...+. -+..+...+.......+|++++|||||+|.+++.++......|+|+|++++++ +.
T Consensus 15 gFeKpk~~LEQY~T~p~-------iAasM~~~Ih~TygdiEgkkl~DLgcgcGmLs~a~sm~~~e~vlGfDIdpeAL-EI 86 (185)
T KOG3420|consen 15 GFEKPKLLLEQYPTRPH-------IAASMLYTIHNTYGDIEGKKLKDLGCGCGMLSIAFSMPKNESVLGFDIDPEAL-EI 86 (185)
T ss_pred cccccchhhhhCCCcHH-------HHHHHHHHHHhhhccccCcchhhhcCchhhhHHHhhcCCCceEEeeecCHHHH-HH
Confidence 34456777777754333 23444455555556679999999999999999777655577799999999997 89
Q ss_pred HHHhHHhcCCCCCcceEeeecCCCCCCCCCCccEEEEcccc
Q 026036 117 IAYNSTTNGITPALPHIKHSWGDAFPIPNPDWDLILASDIL 157 (244)
Q Consensus 117 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fD~I~~~~~l 157 (244)
.++|+....+ ++..++.+..+. ....+.||.++.+.++
T Consensus 87 f~rNaeEfEv--qidlLqcdildl-e~~~g~fDtaviNppF 124 (185)
T KOG3420|consen 87 FTRNAEEFEV--QIDLLQCDILDL-ELKGGIFDTAVINPPF 124 (185)
T ss_pred HhhchHHhhh--hhheeeeeccch-hccCCeEeeEEecCCC
Confidence 9999887666 234444444333 2234789999999887
|
|
| >KOG1500 consensus Protein arginine N-methyltransferase CARM1 [Posttranslational modification, protein turnover, chaperones; Transcription] | Back alignment and domain information |
|---|
Probab=99.10 E-value=1.9e-09 Score=88.55 Aligned_cols=110 Identities=14% Similarity=0.205 Sum_probs=80.2
Q ss_pred hhccCcccCCeEEEeCCCCcHHHHHHHHhCCCeEEEEeCChHHHHHHHHHhHHhcCCCCCcceEeeecCCCCCCCCCCcc
Q 026036 70 MHHREWIERRRCIELGSGTGALAIFLRKAMNLDITTSDYNDQEIEDNIAYNSTTNGITPALPHIKHSWGDAFPIPNPDWD 149 (244)
Q Consensus 70 ~~~~~~~~~~~VLdlG~G~G~~~~~~a~~~~~~v~~~D~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fD 149 (244)
..+...+.++.|||+|||+|+++.++++.+..+|++++.|+ |. +.+++-+..|.+..++..+.....+ .. .+++.|
T Consensus 170 l~N~sDF~~kiVlDVGaGSGILS~FAaqAGA~~vYAvEAS~-MA-qyA~~Lv~~N~~~~rItVI~GKiEd-ie-LPEk~D 245 (517)
T KOG1500|consen 170 LENHSDFQDKIVLDVGAGSGILSFFAAQAGAKKVYAVEASE-MA-QYARKLVASNNLADRITVIPGKIED-IE-LPEKVD 245 (517)
T ss_pred HhcccccCCcEEEEecCCccHHHHHHHHhCcceEEEEehhH-HH-HHHHHHHhcCCccceEEEccCcccc-cc-Cchhcc
Confidence 33445678999999999999999999999999999999987 44 8888888888887666655444332 22 246799
Q ss_pred EEEEcccccCCcChHHHHHHHHHHHHhcCCCCceE
Q 026036 150 LILASDILLYVKQYSNLIKSLSVLLKSYKPKDSQV 184 (244)
Q Consensus 150 ~I~~~~~l~~~~~~~~l~~~l~~~~~~lk~gG~~~ 184 (244)
+|++-.+=|.- -.+...++.-...+.|||+|..+
T Consensus 246 viISEPMG~mL-~NERMLEsYl~Ark~l~P~GkMf 279 (517)
T KOG1500|consen 246 VIISEPMGYML-VNERMLESYLHARKWLKPNGKMF 279 (517)
T ss_pred EEEeccchhhh-hhHHHHHHHHHHHhhcCCCCccc
Confidence 99997664332 23334444445669999999644
|
|
| >KOG3191 consensus Predicted N6-DNA-methyltransferase [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=99.10 E-value=3e-09 Score=80.11 Aligned_cols=131 Identities=15% Similarity=0.198 Sum_probs=89.5
Q ss_pred CCeEEEeCCCCcHHHHHHHHhC--CCeEEEEeCChHHHHHHHHHhHHhcCCCCCcceEeeecCCCCCCCCCCccEEEEcc
Q 026036 78 RRRCIELGSGTGALAIFLRKAM--NLDITTSDYNDQEIEDNIAYNSTTNGITPALPHIKHSWGDAFPIPNPDWDLILASD 155 (244)
Q Consensus 78 ~~~VLdlG~G~G~~~~~~a~~~--~~~v~~~D~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fD~I~~~~ 155 (244)
..-++|||||+|..+-++++.. ...+.++|+++.++ +...+.+..|+. .+..+..+..+.+. .++.|+++-|.
T Consensus 44 ~~i~lEIG~GSGvvstfL~~~i~~~~~~latDiNp~A~-~~Tl~TA~~n~~--~~~~V~tdl~~~l~--~~~VDvLvfNP 118 (209)
T KOG3191|consen 44 PEICLEIGCGSGVVSTFLASVIGPQALYLATDINPEAL-EATLETARCNRV--HIDVVRTDLLSGLR--NESVDVLVFNP 118 (209)
T ss_pred ceeEEEecCCcchHHHHHHHhcCCCceEEEecCCHHHH-HHHHHHHHhcCC--ccceeehhHHhhhc--cCCccEEEECC
Confidence 4689999999999998888776 46699999999987 777777777766 23444444433333 27899999887
Q ss_pred cccCCcChH-------------------HHHHHHHHHHHhcCCCCceEeecccccCCCCCCCCCCCeEEEeeeeccCccc
Q 026036 156 ILLYVKQYS-------------------NLIKSLSVLLKSYKPKDSQVGHLTKNEQGEGTEGLPWPAFLMSWRRRIGKED 216 (244)
Q Consensus 156 ~l~~~~~~~-------------------~l~~~l~~~~~~lk~gG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 216 (244)
+. -..+.. -..+.+..+-.+|.|.|.+++.. .+.. .
T Consensus 119 PY-Vpt~~~~i~~~~i~~a~aGG~~Gr~v~d~ll~~v~~iLSp~Gv~Ylv~--------------------~~~N----~ 173 (209)
T KOG3191|consen 119 PY-VPTSDEEIGDEGIASAWAGGKDGREVTDRLLPQVPDILSPRGVFYLVA--------------------LRAN----K 173 (209)
T ss_pred Cc-CcCCcccchhHHHHHHHhcCcchHHHHHHHHhhhhhhcCcCceEEeee--------------------hhhc----C
Confidence 74 322111 13355555667778888777651 1111 1
Q ss_pred hhhHHHHHhhcCCeEEEeccEE
Q 026036 217 ETIFFTSCENAGLEVKHLGSRV 238 (244)
Q Consensus 217 ~~~~~~~l~~~Gf~v~~~~~~~ 238 (244)
.+++.+.++..||.+....+|.
T Consensus 174 p~ei~k~l~~~g~~~~~~~~Rk 195 (209)
T KOG3191|consen 174 PKEILKILEKKGYGVRIAMQRK 195 (209)
T ss_pred HHHHHHHHhhcccceeEEEEEe
Confidence 3688889999999887766554
|
|
| >PRK05031 tRNA (uracil-5-)-methyltransferase; Validated | Back alignment and domain information |
|---|
Probab=99.09 E-value=1.1e-09 Score=93.87 Aligned_cols=114 Identities=14% Similarity=0.177 Sum_probs=73.5
Q ss_pred hHHHHHHHHhhccCcccCCeEEEeCCCCcHHHHHHHHhCCCeEEEEeCChHHHHHHHHHhHHhcCCCCCcceEeeecCCC
Q 026036 61 GTFSFAEWLMHHREWIERRRCIELGSGTGALAIFLRKAMNLDITTSDYNDQEIEDNIAYNSTTNGITPALPHIKHSWGDA 140 (244)
Q Consensus 61 ~~~~l~~~~~~~~~~~~~~~VLdlG~G~G~~~~~~a~~~~~~v~~~D~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 140 (244)
.+..|.+++...... .+.+|||++||+|.+++.+++. ..+|+++|+++.++ +.+++|+..|+++ ++..+..+..+.
T Consensus 191 ~~e~l~~~v~~~~~~-~~~~vLDl~~G~G~~sl~la~~-~~~v~~vE~~~~ai-~~a~~N~~~~~~~-~v~~~~~d~~~~ 266 (362)
T PRK05031 191 VNEKMLEWALDATKG-SKGDLLELYCGNGNFTLALARN-FRRVLATEISKPSV-AAAQYNIAANGID-NVQIIRMSAEEF 266 (362)
T ss_pred HHHHHHHHHHHHhhc-CCCeEEEEeccccHHHHHHHhh-CCEEEEEECCHHHH-HHHHHHHHHhCCC-cEEEEECCHHHH
Confidence 466677776654432 2357999999999999988876 56899999999998 8899999988873 334443333221
Q ss_pred CCC---------------CCCCccEEEEcccccCCcChHHHHHHHHHHHHhcCCCCceEee
Q 026036 141 FPI---------------PNPDWDLILASDILLYVKQYSNLIKSLSVLLKSYKPKDSQVGH 186 (244)
Q Consensus 141 ~~~---------------~~~~fD~I~~~~~l~~~~~~~~l~~~l~~~~~~lk~gG~~~~~ 186 (244)
++. ...+||+|+.-++ +. ...+ ++++.+.+ |++.++++
T Consensus 267 l~~~~~~~~~~~~~~~~~~~~~~D~v~lDPP-R~-G~~~---~~l~~l~~---~~~ivyvS 319 (362)
T PRK05031 267 TQAMNGVREFNRLKGIDLKSYNFSTIFVDPP-RA-GLDD---ETLKLVQA---YERILYIS 319 (362)
T ss_pred HHHHhhcccccccccccccCCCCCEEEECCC-CC-CCcH---HHHHHHHc---cCCEEEEE
Confidence 110 0125899998555 33 2223 55555544 55544444
|
|
| >PLN02476 O-methyltransferase | Back alignment and domain information |
|---|
Probab=99.07 E-value=9.2e-10 Score=90.16 Aligned_cols=105 Identities=12% Similarity=0.172 Sum_probs=77.9
Q ss_pred cccCCeEEEeCCCCcHHHHHHHHhC--CCeEEEEeCChHHHHHHHHHhHHhcCCCCCcceEeeecCCCCCC-----CCCC
Q 026036 75 WIERRRCIELGSGTGALAIFLRKAM--NLDITTSDYNDQEIEDNIAYNSTTNGITPALPHIKHSWGDAFPI-----PNPD 147 (244)
Q Consensus 75 ~~~~~~VLdlG~G~G~~~~~~a~~~--~~~v~~~D~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~ 147 (244)
..+.++|||||+|+|..++.++... ..+|+.+|.+++.. +.+++|....++..++..+..+..+.++. ..++
T Consensus 116 ~~~ak~VLEIGT~tGySal~lA~al~~~G~V~TiE~d~e~~-~~Ar~n~~~aGl~~~I~li~GdA~e~L~~l~~~~~~~~ 194 (278)
T PLN02476 116 ILGAERCIEVGVYTGYSSLAVALVLPESGCLVACERDSNSL-EVAKRYYELAGVSHKVNVKHGLAAESLKSMIQNGEGSS 194 (278)
T ss_pred hcCCCeEEEecCCCCHHHHHHHHhCCCCCEEEEEECCHHHH-HHHHHHHHHcCCCCcEEEEEcCHHHHHHHHHhcccCCC
Confidence 3456899999999999999998754 55799999999986 89999999988865554443322222211 1357
Q ss_pred ccEEEEcccccCCcChHHHHHHHHHHHHhcCCCCceEee
Q 026036 148 WDLILASDILLYVKQYSNLIKSLSVLLKSYKPKDSQVGH 186 (244)
Q Consensus 148 fD~I~~~~~l~~~~~~~~l~~~l~~~~~~lk~gG~~~~~ 186 (244)
||+|+. |. ...+....++.+.++|+|||.+++-
T Consensus 195 FD~VFI-Da-----~K~~Y~~y~e~~l~lL~~GGvIV~D 227 (278)
T PLN02476 195 YDFAFV-DA-----DKRMYQDYFELLLQLVRVGGVIVMD 227 (278)
T ss_pred CCEEEE-CC-----CHHHHHHHHHHHHHhcCCCcEEEEe
Confidence 999987 32 2355668889999999999987765
|
|
| >PF03602 Cons_hypoth95: Conserved hypothetical protein 95; InterPro: IPR004398 This entry contains Ribosomal RNA small subunit methyltransferase D as well as the putative rRNA methyltransferase YlbH | Back alignment and domain information |
|---|
Probab=99.06 E-value=9.6e-11 Score=90.78 Aligned_cols=127 Identities=18% Similarity=0.137 Sum_probs=79.6
Q ss_pred ceeechHHHHHHHHhhccC-c-ccCCeEEEeCCCCcHHHHHHHHhCCCeEEEEeCChHHHHHHHHHhHHhcCCCCCcceE
Q 026036 56 NFLWPGTFSFAEWLMHHRE-W-IERRRCIELGSGTGALAIFLRKAMNLDITTSDYNDQEIEDNIAYNSTTNGITPALPHI 133 (244)
Q Consensus 56 ~~~w~~~~~l~~~~~~~~~-~-~~~~~VLdlG~G~G~~~~~~a~~~~~~v~~~D~~~~~l~~~~~~~~~~~~~~~~~~~~ 133 (244)
..+.|.+..+-+-+..... . .+|.+||||.||||.+|+.++.++..+|+++|.++.++ ..+++|+...+...++..+
T Consensus 19 ~~~RPT~drvrealFniL~~~~~~g~~vLDLFaGSGalGlEALSRGA~~v~fVE~~~~a~-~~i~~N~~~l~~~~~~~v~ 97 (183)
T PF03602_consen 19 DNTRPTTDRVREALFNILQPRNLEGARVLDLFAGSGALGLEALSRGAKSVVFVEKNRKAI-KIIKKNLEKLGLEDKIRVI 97 (183)
T ss_dssp -TS-SSSHHHHHHHHHHHHCH-HTT-EEEETT-TTSHHHHHHHHTT-SEEEEEES-HHHH-HHHHHHHHHHT-GGGEEEE
T ss_pred CCcCCCcHHHHHHHHHHhcccccCCCeEEEcCCccCccHHHHHhcCCCeEEEEECCHHHH-HHHHHHHHHhCCCcceeee
Confidence 4455666555555444322 2 68999999999999999999988889999999999987 8999999887765433444
Q ss_pred eeecCCCCC---CCCCCccEEEEcccccCCcChHHHHHHHHHHH--HhcCCCCceEee
Q 026036 134 KHSWGDAFP---IPNPDWDLILASDILLYVKQYSNLIKSLSVLL--KSYKPKDSQVGH 186 (244)
Q Consensus 134 ~~~~~~~~~---~~~~~fD~I~~~~~l~~~~~~~~l~~~l~~~~--~~lk~gG~~~~~ 186 (244)
..+....+. ....+||+|++-++ |..... ..+++..+. ..|+++|.+++-
T Consensus 98 ~~d~~~~l~~~~~~~~~fDiIflDPP-Y~~~~~--~~~~l~~l~~~~~l~~~~~ii~E 152 (183)
T PF03602_consen 98 KGDAFKFLLKLAKKGEKFDIIFLDPP-YAKGLY--YEELLELLAENNLLNEDGLIIIE 152 (183)
T ss_dssp ESSHHHHHHHHHHCTS-EEEEEE--S-TTSCHH--HHHHHHHHHHTTSEEEEEEEEEE
T ss_pred ccCHHHHHHhhcccCCCceEEEECCC-cccchH--HHHHHHHHHHCCCCCCCEEEEEE
Confidence 333221121 13568999998555 454432 235666665 788888866654
|
They methylate the guanosine in position 966 of 16S rRNA in the assembled 30S particle [].; GO: 0008168 methyltransferase activity, 0031167 rRNA methylation; PDB: 3P9N_A 2ESR_B 2IFT_A 1WS6_A 2FPO_B 2FHP_A. |
| >PRK03612 spermidine synthase; Provisional | Back alignment and domain information |
|---|
Probab=99.06 E-value=1e-09 Score=98.41 Aligned_cols=109 Identities=17% Similarity=0.152 Sum_probs=69.5
Q ss_pred cCCeEEEeCCCCcHHHHHHHHhCC-CeEEEEeCChHHHHHHHHHhHHhcCCC---CCcceEeeecCCCC---CCCCCCcc
Q 026036 77 ERRRCIELGSGTGALAIFLRKAMN-LDITTSDYNDQEIEDNIAYNSTTNGIT---PALPHIKHSWGDAF---PIPNPDWD 149 (244)
Q Consensus 77 ~~~~VLdlG~G~G~~~~~~a~~~~-~~v~~~D~~~~~l~~~~~~~~~~~~~~---~~~~~~~~~~~~~~---~~~~~~fD 149 (244)
++++|||||||+|..+..+++... .+|+++|++++++ +.++++...+.+. ..-+.+++..+|.. ....++||
T Consensus 297 ~~~rVL~IG~G~G~~~~~ll~~~~v~~v~~VEid~~vi-~~ar~~~~l~~~~~~~~~dprv~vi~~Da~~~l~~~~~~fD 375 (521)
T PRK03612 297 RPRRVLVLGGGDGLALREVLKYPDVEQVTLVDLDPAMT-ELARTSPALRALNGGALDDPRVTVVNDDAFNWLRKLAEKFD 375 (521)
T ss_pred CCCeEEEEcCCccHHHHHHHhCCCcCeEEEEECCHHHH-HHHHhCCcchhhhccccCCCceEEEEChHHHHHHhCCCCCC
Confidence 467999999999999988887644 7999999999987 7777743221110 00112333333322 22346899
Q ss_pred EEEEcccccCCcChHH--HHHHHHHHHHhcCCCCceEee
Q 026036 150 LILASDILLYVKQYSN--LIKSLSVLLKSYKPKDSQVGH 186 (244)
Q Consensus 150 ~I~~~~~l~~~~~~~~--l~~~l~~~~~~lk~gG~~~~~ 186 (244)
+|++...-........ -.+.++.+.+.|||||.+++.
T Consensus 376 vIi~D~~~~~~~~~~~L~t~ef~~~~~~~L~pgG~lv~~ 414 (521)
T PRK03612 376 VIIVDLPDPSNPALGKLYSVEFYRLLKRRLAPDGLLVVQ 414 (521)
T ss_pred EEEEeCCCCCCcchhccchHHHHHHHHHhcCCCeEEEEe
Confidence 9999533211010011 125778899999999987775
|
|
| >PF00891 Methyltransf_2: O-methyltransferase; InterPro: IPR001077 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals | Back alignment and domain information |
|---|
Probab=99.06 E-value=2.5e-09 Score=86.82 Aligned_cols=110 Identities=19% Similarity=0.216 Sum_probs=77.4
Q ss_pred HHHhhccCcccCCeEEEeCCCCcHHHHHHHHhC-CCeEEEEeCChHHHHHHHHHhHHhcCCCCCcceEeeecCCCCCCCC
Q 026036 67 EWLMHHREWIERRRCIELGSGTGALAIFLRKAM-NLDITTSDYNDQEIEDNIAYNSTTNGITPALPHIKHSWGDAFPIPN 145 (244)
Q Consensus 67 ~~~~~~~~~~~~~~VLdlG~G~G~~~~~~a~~~-~~~v~~~D~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 145 (244)
..+.......+..+|+|||+|+|.++..+++.. +.+++..|... .+ +.+++ ..++..+..+..+++ +
T Consensus 90 ~~~~~~~d~~~~~~vvDvGGG~G~~~~~l~~~~P~l~~~v~Dlp~-v~-~~~~~-------~~rv~~~~gd~f~~~---P 157 (241)
T PF00891_consen 90 DILLEAFDFSGFKTVVDVGGGSGHFAIALARAYPNLRATVFDLPE-VI-EQAKE-------ADRVEFVPGDFFDPL---P 157 (241)
T ss_dssp HHHHHHSTTTTSSEEEEET-TTSHHHHHHHHHSTTSEEEEEE-HH-HH-CCHHH-------TTTEEEEES-TTTCC---S
T ss_pred hhhhccccccCccEEEeccCcchHHHHHHHHHCCCCcceeeccHh-hh-hcccc-------ccccccccccHHhhh---c
Confidence 334444455566799999999999999998887 78999999944 44 54444 234444444443322 2
Q ss_pred CCccEEEEcccccCCcChHHHHHHHHHHHHhcCCC--CceEeecccc
Q 026036 146 PDWDLILASDILLYVKQYSNLIKSLSVLLKSYKPK--DSQVGHLTKN 190 (244)
Q Consensus 146 ~~fD~I~~~~~l~~~~~~~~l~~~l~~~~~~lk~g--G~~~~~~~~~ 190 (244)
. +|+|+..+++ |..+.++..+.|+++++.|+|| |+++|.....
T Consensus 158 ~-~D~~~l~~vL-h~~~d~~~~~iL~~~~~al~pg~~g~llI~e~~~ 202 (241)
T PF00891_consen 158 V-ADVYLLRHVL-HDWSDEDCVKILRNAAAALKPGKDGRLLIIEMVL 202 (241)
T ss_dssp S-ESEEEEESSG-GGS-HHHHHHHHHHHHHHSEECTTEEEEEEEEEE
T ss_pred c-ccceeeehhh-hhcchHHHHHHHHHHHHHhCCCCCCeEEEEeecc
Confidence 3 9999999999 4455678889999999999999 9999984443
|
The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. This domain includes a range of O-methyltransferases some of which utilise S-adenosyl methionine as substrate []. In prokaryotes, the major role of DNA methylation is to protect host DNA against degradation by restriction enzymes. In eukaryotes, DNA methylation has been implicated in the control of several cellular processes, including differentiation, gene regulation, and embryonic development. O-methyltransferases have a common catalytic domain structure, which might be universal among S-adenosyl-L-methionine (AdoMet)-dependent methyltransferases []. Comparative analysis of the predicted amino acid sequences of a number of plant O-methyltransferase cDNA clones show that they share some 32-71% sequence identity, and can be grouped according to the different compounds they utilise as substrates [].; GO: 0008171 O-methyltransferase activity; PDB: 1FPQ_A 1FP1_D 3P9K_B 3P9I_D 3P9C_A 3I53_A 3I5U_A 3I64_A 3I58_A 1ZG3_A .... |
| >COG1092 Predicted SAM-dependent methyltransferases [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.06 E-value=2.9e-09 Score=91.10 Aligned_cols=107 Identities=18% Similarity=0.229 Sum_probs=81.9
Q ss_pred cCCeEEEeCCCCcHHHHHHHHhCCCeEEEEeCChHHHHHHHHHhHHhcCCCCCcceEeeecCCCCCC------CCCCccE
Q 026036 77 ERRRCIELGSGTGALAIFLRKAMNLDITTSDYNDQEIEDNIAYNSTTNGITPALPHIKHSWGDAFPI------PNPDWDL 150 (244)
Q Consensus 77 ~~~~VLdlG~G~G~~~~~~a~~~~~~v~~~D~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~fD~ 150 (244)
+|++||++-|=||.+++++|..++.+|+.||+|..++ +.+++|...|++... .+.+..+|.+.+ ...+||+
T Consensus 217 ~GkrvLNlFsYTGgfSv~Aa~gGA~~vt~VD~S~~al-~~a~~N~~LNg~~~~--~~~~i~~Dvf~~l~~~~~~g~~fDl 293 (393)
T COG1092 217 AGKRVLNLFSYTGGFSVHAALGGASEVTSVDLSKRAL-EWARENAELNGLDGD--RHRFIVGDVFKWLRKAERRGEKFDL 293 (393)
T ss_pred cCCeEEEecccCcHHHHHHHhcCCCceEEEeccHHHH-HHHHHHHHhcCCCcc--ceeeehhhHHHHHHHHHhcCCcccE
Confidence 5899999999999999999987677999999999987 999999999998432 223333443321 2348999
Q ss_pred EEEcccccCCc------ChHHHHHHHHHHHHhcCCCCceEee
Q 026036 151 ILASDILLYVK------QYSNLIKSLSVLLKSYKPKDSQVGH 186 (244)
Q Consensus 151 I~~~~~l~~~~------~~~~l~~~l~~~~~~lk~gG~~~~~ 186 (244)
|+.-++-|--. ...+..+++..+.++|+|||.++++
T Consensus 294 IilDPPsF~r~k~~~~~~~rdy~~l~~~~~~iL~pgG~l~~~ 335 (393)
T COG1092 294 IILDPPSFARSKKQEFSAQRDYKDLNDLALRLLAPGGTLVTS 335 (393)
T ss_pred EEECCcccccCcccchhHHHHHHHHHHHHHHHcCCCCEEEEE
Confidence 99977765321 1334567888899999999987765
|
|
| >COG4122 Predicted O-methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.06 E-value=1.2e-09 Score=86.12 Aligned_cols=104 Identities=17% Similarity=0.275 Sum_probs=80.6
Q ss_pred ccCCeEEEeCCCCcHHHHHHHHhC--CCeEEEEeCChHHHHHHHHHhHHhcCCCCCcceEe-eecCCCCC-CCCCCccEE
Q 026036 76 IERRRCIELGSGTGALAIFLRKAM--NLDITTSDYNDQEIEDNIAYNSTTNGITPALPHIK-HSWGDAFP-IPNPDWDLI 151 (244)
Q Consensus 76 ~~~~~VLdlG~G~G~~~~~~a~~~--~~~v~~~D~~~~~l~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~-~~~~~fD~I 151 (244)
...++|||||++.|..++.+|... ..+++.+|.++++. +.+++|....++..++..+. .++.+.+. ...++||+|
T Consensus 58 ~~~k~iLEiGT~~GySal~mA~~l~~~g~l~tiE~~~e~~-~~A~~n~~~ag~~~~i~~~~~gdal~~l~~~~~~~fDli 136 (219)
T COG4122 58 SGPKRILEIGTAIGYSALWMALALPDDGRLTTIERDEERA-EIARENLAEAGVDDRIELLLGGDALDVLSRLLDGSFDLV 136 (219)
T ss_pred cCCceEEEeecccCHHHHHHHhhCCCCCeEEEEeCCHHHH-HHHHHHHHHcCCcceEEEEecCcHHHHHHhccCCCccEE
Confidence 366899999999999999998776 46899999999987 89999999999977655554 24433333 356799999
Q ss_pred EEcccccCCcChHHHHHHHHHHHHhcCCCCceEee
Q 026036 152 LASDILLYVKQYSNLIKSLSVLLKSYKPKDSQVGH 186 (244)
Q Consensus 152 ~~~~~l~~~~~~~~l~~~l~~~~~~lk~gG~~~~~ 186 (244)
+. |. ...+-.+.++.+.++|+|||.+++-
T Consensus 137 FI-Da-----dK~~yp~~le~~~~lLr~GGliv~D 165 (219)
T COG4122 137 FI-DA-----DKADYPEYLERALPLLRPGGLIVAD 165 (219)
T ss_pred EE-eC-----ChhhCHHHHHHHHHHhCCCcEEEEe
Confidence 87 32 2334448889999999999977665
|
|
| >PRK00811 spermidine synthase; Provisional | Back alignment and domain information |
|---|
Probab=99.05 E-value=1.2e-09 Score=90.55 Aligned_cols=108 Identities=14% Similarity=0.118 Sum_probs=69.9
Q ss_pred cCCeEEEeCCCCcHHHHHHHHhC-CCeEEEEeCChHHHHHHHHHhHHhcCC-CCCcceEeeecCCCC---CCCCCCccEE
Q 026036 77 ERRRCIELGSGTGALAIFLRKAM-NLDITTSDYNDQEIEDNIAYNSTTNGI-TPALPHIKHSWGDAF---PIPNPDWDLI 151 (244)
Q Consensus 77 ~~~~VLdlG~G~G~~~~~~a~~~-~~~v~~~D~~~~~l~~~~~~~~~~~~~-~~~~~~~~~~~~~~~---~~~~~~fD~I 151 (244)
++++||+||||+|..+..+++.. ..+|+++|+++.++ +.++++...... ...-..+.+..+|.. ....++||+|
T Consensus 76 ~p~~VL~iG~G~G~~~~~~l~~~~~~~V~~VEid~~vv-~~a~~~~~~~~~~~~~d~rv~v~~~Da~~~l~~~~~~yDvI 154 (283)
T PRK00811 76 NPKRVLIIGGGDGGTLREVLKHPSVEKITLVEIDERVV-EVCRKYLPEIAGGAYDDPRVELVIGDGIKFVAETENSFDVI 154 (283)
T ss_pred CCCEEEEEecCchHHHHHHHcCCCCCEEEEEeCCHHHH-HHHHHHhHHhccccccCCceEEEECchHHHHhhCCCcccEE
Confidence 45799999999999999887763 56899999999987 777776542211 000112333344432 2235689999
Q ss_pred EEcccccCCcChHH--HHHHHHHHHHhcCCCCceEee
Q 026036 152 LASDILLYVKQYSN--LIKSLSVLLKSYKPKDSQVGH 186 (244)
Q Consensus 152 ~~~~~l~~~~~~~~--l~~~l~~~~~~lk~gG~~~~~ 186 (244)
++..+- ....... -...++.+.+.|+|||.+++.
T Consensus 155 i~D~~d-p~~~~~~l~t~ef~~~~~~~L~~gGvlv~~ 190 (283)
T PRK00811 155 IVDSTD-PVGPAEGLFTKEFYENCKRALKEDGIFVAQ 190 (283)
T ss_pred EECCCC-CCCchhhhhHHHHHHHHHHhcCCCcEEEEe
Confidence 984221 1111111 146778899999999988775
|
|
| >COG0742 N6-adenine-specific methylase [DNA replication, recombination, and repair] | Back alignment and domain information |
|---|
Probab=99.04 E-value=3e-09 Score=81.47 Aligned_cols=128 Identities=17% Similarity=0.078 Sum_probs=86.8
Q ss_pred ceeechHHHHHHHHhhccC--cccCCeEEEeCCCCcHHHHHHHHhCCCeEEEEeCChHHHHHHHHHhHHhcCCCCCcceE
Q 026036 56 NFLWPGTFSFAEWLMHHRE--WIERRRCIELGSGTGALAIFLRKAMNLDITTSDYNDQEIEDNIAYNSTTNGITPALPHI 133 (244)
Q Consensus 56 ~~~w~~~~~l~~~~~~~~~--~~~~~~VLdlG~G~G~~~~~~a~~~~~~v~~~D~~~~~l~~~~~~~~~~~~~~~~~~~~ 133 (244)
..+.|.+-.+-+-+..-.. ...|.++||+-+|||.+++.++.++..+++++|.+..++ ..+++|+...+...++..+
T Consensus 20 ~~~RPT~drVREalFNil~~~~i~g~~~LDlFAGSGaLGlEAlSRGA~~~~~vE~~~~a~-~~l~~N~~~l~~~~~~~~~ 98 (187)
T COG0742 20 PGTRPTTDRVREALFNILAPDEIEGARVLDLFAGSGALGLEALSRGAARVVFVEKDRKAV-KILKENLKALGLEGEARVL 98 (187)
T ss_pred CCcCCCchHHHHHHHHhccccccCCCEEEEecCCccHhHHHHHhCCCceEEEEecCHHHH-HHHHHHHHHhCCccceEEE
Confidence 3455666655555544433 368999999999999999999999899999999999986 8889998877765555544
Q ss_pred eeecCCCCCCCCC--CccEEEEcccccCCcChHHHHHHHHH--HHHhcCCCCceEee
Q 026036 134 KHSWGDAFPIPNP--DWDLILASDILLYVKQYSNLIKSLSV--LLKSYKPKDSQVGH 186 (244)
Q Consensus 134 ~~~~~~~~~~~~~--~fD~I~~~~~l~~~~~~~~l~~~l~~--~~~~lk~gG~~~~~ 186 (244)
..+....++.... +||+|+. |+-|.... -+....+.. -...|+|+|.+++-
T Consensus 99 ~~da~~~L~~~~~~~~FDlVfl-DPPy~~~l-~~~~~~~~~~~~~~~L~~~~~iv~E 153 (187)
T COG0742 99 RNDALRALKQLGTREPFDLVFL-DPPYAKGL-LDKELALLLLEENGWLKPGALIVVE 153 (187)
T ss_pred eecHHHHHHhcCCCCcccEEEe-CCCCccch-hhHHHHHHHHHhcCCcCCCcEEEEE
Confidence 4433322222333 4999998 55445332 222333333 34679999876654
|
|
| >PF03291 Pox_MCEL: mRNA capping enzyme; InterPro: IPR004971 This is a family of viral mRNA capping enzymes | Back alignment and domain information |
|---|
Probab=99.04 E-value=1.4e-09 Score=91.65 Aligned_cols=131 Identities=15% Similarity=0.158 Sum_probs=77.2
Q ss_pred echHHHHHHHHhhccCcccCCeEEEeCCCCcHHHHHHHHhCCCeEEEEeCChHHHHHHHHHhHHhcC-CCC---Ccc-eE
Q 026036 59 WPGTFSFAEWLMHHREWIERRRCIELGSGTGALAIFLRKAMNLDITTSDYNDQEIEDNIAYNSTTNG-ITP---ALP-HI 133 (244)
Q Consensus 59 w~~~~~l~~~~~~~~~~~~~~~VLdlG~G~G~~~~~~a~~~~~~v~~~D~~~~~l~~~~~~~~~~~~-~~~---~~~-~~ 133 (244)
|--+..+..++.......++.+|||||||-|.-..-.....-.+++|+|++...+.++.++-..... ... +.. ..
T Consensus 44 wvKs~LI~~~~~~~~~~~~~~~VLDl~CGkGGDL~Kw~~~~i~~~vg~Dis~~si~ea~~Ry~~~~~~~~~~~~~~~f~a 123 (331)
T PF03291_consen 44 WVKSVLIQKYAKKVKQNRPGLTVLDLCCGKGGDLQKWQKAKIKHYVGIDISEESIEEARERYKQLKKRNNSKQYRFDFIA 123 (331)
T ss_dssp HHHHHHHHHHCHCCCCTTTT-EEEEET-TTTTTHHHHHHTT-SEEEEEES-HHHHHHHHHHHHHHHTSTT-HTSEECCEE
T ss_pred HHHHHHHHHHHHhhhccCCCCeEEEecCCCchhHHHHHhcCCCEEEEEeCCHHHHHHHHHHHHHhccccccccccccchh
Confidence 4455566666543333337889999999999876666666678899999999988444333211111 100 001 11
Q ss_pred eeecCCCC--------CCCCCCccEEEEcccccCC-cChHHHHHHHHHHHHhcCCCCceEeeccc
Q 026036 134 KHSWGDAF--------PIPNPDWDLILASDILLYV-KQYSNLIKSLSVLLKSYKPKDSQVGHLTK 189 (244)
Q Consensus 134 ~~~~~~~~--------~~~~~~fD~I~~~~~l~~~-~~~~~l~~~l~~~~~~lk~gG~~~~~~~~ 189 (244)
.+..+|.. .....+||+|-|-.++++. ++.+....+|+.+...|+|||.|+.+++.
T Consensus 124 ~f~~~D~f~~~l~~~~~~~~~~FDvVScQFalHY~Fese~~ar~~l~Nvs~~Lk~GG~FIgT~~d 188 (331)
T PF03291_consen 124 EFIAADCFSESLREKLPPRSRKFDVVSCQFALHYAFESEEKARQFLKNVSSLLKPGGYFIGTTPD 188 (331)
T ss_dssp EEEESTTCCSHHHCTSSSTTS-EEEEEEES-GGGGGSSHHHHHHHHHHHHHTEEEEEEEEEEEE-
T ss_pred heeccccccchhhhhccccCCCcceeehHHHHHHhcCCHHHHHHHHHHHHHhcCCCCEEEEEecC
Confidence 22233322 1123489999999888554 34445567999999999999999988433
|
The enzyme catalyses the first two reactions in the mRNA cap formation pathway. It is a heterodimer consisting of a large and small subunit. This entry is the large subunit. ; GO: 0006370 mRNA capping; PDB: 3EPP_A 3BGV_C 2VDW_C 1RI5_A 1RI3_A 1RI1_A 1Z3C_A 1RI2_A 2HV9_A 1RI4_A. |
| >PRK13256 thiopurine S-methyltransferase; Reviewed | Back alignment and domain information |
|---|
Probab=99.02 E-value=6.8e-09 Score=82.71 Aligned_cols=125 Identities=9% Similarity=0.086 Sum_probs=84.0
Q ss_pred HHHHHHHHhhccCcccCCeEEEeCCCCcHHHHHHHHhCCCeEEEEeCChHHHHHHHHHhHHhc------CC-CCCcceEe
Q 026036 62 TFSFAEWLMHHREWIERRRCIELGSGTGALAIFLRKAMNLDITTSDYNDQEIEDNIAYNSTTN------GI-TPALPHIK 134 (244)
Q Consensus 62 ~~~l~~~~~~~~~~~~~~~VLdlG~G~G~~~~~~a~~~~~~v~~~D~~~~~l~~~~~~~~~~~------~~-~~~~~~~~ 134 (244)
...|.++..... ..++.+||..|||.|.-...+|.+ +.+|+|+|+|+.++....++|-... .. ..+...+.
T Consensus 29 np~L~~~~~~l~-~~~~~rvLvPgCGkg~D~~~LA~~-G~~V~GvDlS~~Ai~~~~~e~~~~~~~~~~~~~~~~~~~~i~ 106 (226)
T PRK13256 29 NEFLVKHFSKLN-INDSSVCLIPMCGCSIDMLFFLSK-GVKVIGIELSEKAVLSFFSQNTINYEVIHGNDYKLYKGDDIE 106 (226)
T ss_pred CHHHHHHHHhcC-CCCCCeEEEeCCCChHHHHHHHhC-CCcEEEEecCHHHHHHHHHHcCCCcceecccccceeccCceE
Confidence 455666654432 236789999999999999999987 7789999999998744333221100 00 00111234
Q ss_pred eecCCCCCCC-----CCCccEEEEcccccCCcChHHHHHHHHHHHHhcCCCCceEeeccc
Q 026036 135 HSWGDAFPIP-----NPDWDLILASDILLYVKQYSNLIKSLSVLLKSYKPKDSQVGHLTK 189 (244)
Q Consensus 135 ~~~~~~~~~~-----~~~fD~I~~~~~l~~~~~~~~l~~~l~~~~~~lk~gG~~~~~~~~ 189 (244)
+..+|.+... .++||+|+-..++ .....+...+..+.+.++|+|||++++.+..
T Consensus 107 ~~~gD~f~l~~~~~~~~~fD~VyDra~~-~Alpp~~R~~Y~~~l~~lL~pgg~llll~~~ 165 (226)
T PRK13256 107 IYVADIFNLPKIANNLPVFDIWYDRGAY-IALPNDLRTNYAKMMLEVCSNNTQILLLVME 165 (226)
T ss_pred EEEccCcCCCccccccCCcCeeeeehhH-hcCCHHHHHHHHHHHHHHhCCCcEEEEEEEe
Confidence 4444444332 2579999987777 5556666779999999999999999888543
|
|
| >KOG2899 consensus Predicted methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.02 E-value=2.9e-09 Score=83.74 Aligned_cols=112 Identities=16% Similarity=0.228 Sum_probs=75.6
Q ss_pred CcccCCeEEEeCCCCcHHHHHHHHhCC-CeEEEEeCChHHHHHHHHHhHHhcCC-CCCc---------------------
Q 026036 74 EWIERRRCIELGSGTGALAIFLRKAMN-LDITTSDYNDQEIEDNIAYNSTTNGI-TPAL--------------------- 130 (244)
Q Consensus 74 ~~~~~~~VLdlG~G~G~~~~~~a~~~~-~~v~~~D~~~~~l~~~~~~~~~~~~~-~~~~--------------------- 130 (244)
..+.+..+|||||-+|.+++.+|+.++ ..|.|+||++.-+ ..+++++....- ...+
T Consensus 55 ~~f~~~~~LDIGCNsG~lt~~iak~F~~r~iLGvDID~~LI-~~Ark~~r~~~~~~~~~~~~~~~~~~~~~~~is~~~~a 133 (288)
T KOG2899|consen 55 DWFEPKQALDIGCNSGFLTLSIAKDFGPRRILGVDIDPVLI-QRARKEIRFPCDHETEVSGKFPASFGVQFGPISQRNEA 133 (288)
T ss_pred cccCcceeEeccCCcchhHHHHHHhhccceeeEeeccHHHH-HHHHHhccccccccccccCCCccccccccccccccccc
Confidence 456788999999999999999999884 5599999999765 777766542110 0000
Q ss_pred ----------------ceEeeecCCCCCCCCCCccEEEEcccc-cCCc--ChHHHHHHHHHHHHhcCCCCceEee
Q 026036 131 ----------------PHIKHSWGDAFPIPNPDWDLILASDIL-LYVK--QYSNLIKSLSVLLKSYKPKDSQVGH 186 (244)
Q Consensus 131 ----------------~~~~~~~~~~~~~~~~~fD~I~~~~~l-~~~~--~~~~l~~~l~~~~~~lk~gG~~~~~ 186 (244)
....+...|.+......||+|+|..+- |-|. ..+-+.++++.+.++|.|||++++-
T Consensus 134 ~~a~t~~~p~n~~f~~~n~vle~~dfl~~~~~~fDiIlcLSiTkWIHLNwgD~GL~~ff~kis~ll~pgGiLvvE 208 (288)
T KOG2899|consen 134 DRAFTTDFPDNVWFQKENYVLESDDFLDMIQPEFDIILCLSITKWIHLNWGDDGLRRFFRKISSLLHPGGILVVE 208 (288)
T ss_pred cccccccCCcchhcccccEEEecchhhhhccccccEEEEEEeeeeEecccccHHHHHHHHHHHHhhCcCcEEEEc
Confidence 011111222222345689999996654 2222 2345779999999999999987775
|
|
| >PRK04148 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=98.98 E-value=1.1e-08 Score=74.41 Aligned_cols=105 Identities=17% Similarity=0.160 Sum_probs=72.5
Q ss_pred HHHHHHhhccCcccCCeEEEeCCCCcH-HHHHHHHhCCCeEEEEeCChHHHHHHHHHhHHhcCCCCCcceEeeecCCCCC
Q 026036 64 SFAEWLMHHREWIERRRCIELGSGTGA-LAIFLRKAMNLDITTSDYNDQEIEDNIAYNSTTNGITPALPHIKHSWGDAFP 142 (244)
Q Consensus 64 ~l~~~~~~~~~~~~~~~VLdlG~G~G~-~~~~~a~~~~~~v~~~D~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 142 (244)
.+++|+.++....++.+|||+|||+|. ++..+++. +.+|+++|+++.++ +.++.+ .. ..+..|+.++..
T Consensus 3 ~i~~~l~~~~~~~~~~kileIG~GfG~~vA~~L~~~-G~~ViaIDi~~~aV-~~a~~~----~~----~~v~dDlf~p~~ 72 (134)
T PRK04148 3 TIAEFIAENYEKGKNKKIVELGIGFYFKVAKKLKES-GFDVIVIDINEKAV-EKAKKL----GL----NAFVDDLFNPNL 72 (134)
T ss_pred HHHHHHHHhcccccCCEEEEEEecCCHHHHHHHHHC-CCEEEEEECCHHHH-HHHHHh----CC----eEEECcCCCCCH
Confidence 467787776655567899999999996 88888765 78999999999876 555443 22 344445544433
Q ss_pred CCCCCccEEEEcccccCCcChHHHHHHHHHHHHhcCCCCceEee
Q 026036 143 IPNPDWDLILASDILLYVKQYSNLIKSLSVLLKSYKPKDSQVGH 186 (244)
Q Consensus 143 ~~~~~fD~I~~~~~l~~~~~~~~l~~~l~~~~~~lk~gG~~~~~ 186 (244)
..-+.+|+|.+..+ .++++..+.++++.. |.-+++.
T Consensus 73 ~~y~~a~liysirp------p~el~~~~~~la~~~--~~~~~i~ 108 (134)
T PRK04148 73 EIYKNAKLIYSIRP------PRDLQPFILELAKKI--NVPLIIK 108 (134)
T ss_pred HHHhcCCEEEEeCC------CHHHHHHHHHHHHHc--CCCEEEE
Confidence 33456899988644 466778877787754 3444544
|
|
| >KOG1975 consensus mRNA cap methyltransferase [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=98.97 E-value=9e-09 Score=84.20 Aligned_cols=114 Identities=16% Similarity=0.175 Sum_probs=76.5
Q ss_pred ccCCeEEEeCCCCcHHHHHHHHhCCCeEEEEeCChHHHHHHHHHhHH-hcCC----CCCcceEeeecC-----CCCCCCC
Q 026036 76 IERRRCIELGSGTGALAIFLRKAMNLDITTSDYNDQEIEDNIAYNST-TNGI----TPALPHIKHSWG-----DAFPIPN 145 (244)
Q Consensus 76 ~~~~~VLdlG~G~G~~~~~~a~~~~~~v~~~D~~~~~l~~~~~~~~~-~~~~----~~~~~~~~~~~~-----~~~~~~~ 145 (244)
.++..+++||||-|.-.+-.-+.+-.+++++||.+..+ +-++++.. ..+. ......+..+.. +.+++.+
T Consensus 116 ~~~~~~~~LgCGKGGDLlKw~kAgI~~~igiDIAevSI-~qa~~RYrdm~~r~~~~~f~a~f~~~Dc~~~~l~d~~e~~d 194 (389)
T KOG1975|consen 116 KRGDDVLDLGCGKGGDLLKWDKAGIGEYIGIDIAEVSI-NQARKRYRDMKNRFKKFIFTAVFIAADCFKERLMDLLEFKD 194 (389)
T ss_pred ccccccceeccCCcccHhHhhhhcccceEeeehhhccH-HHHHHHHHHHHhhhhcccceeEEEEeccchhHHHHhccCCC
Confidence 37789999999999888877776677899999998766 33432221 1111 011223322221 2234445
Q ss_pred CCccEEEEcccccCC-cChHHHHHHHHHHHHhcCCCCceEeecccc
Q 026036 146 PDWDLILASDILLYV-KQYSNLIKSLSVLLKSYKPKDSQVGHLTKN 190 (244)
Q Consensus 146 ~~fD~I~~~~~l~~~-~~~~~l~~~l~~~~~~lk~gG~~~~~~~~~ 190 (244)
++||+|=|-.++++. +.......+++++++.|+|||.|+-+++..
T Consensus 195 p~fDivScQF~~HYaFetee~ar~~l~Nva~~LkpGG~FIgTiPds 240 (389)
T KOG1975|consen 195 PRFDIVSCQFAFHYAFETEESARIALRNVAKCLKPGGVFIGTIPDS 240 (389)
T ss_pred CCcceeeeeeeEeeeeccHHHHHHHHHHHHhhcCCCcEEEEecCcH
Confidence 669999998887443 455677789999999999999888774443
|
|
| >COG2265 TrmA SAM-dependent methyltransferases related to tRNA (uracil-5-)-methyltransferase [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=98.97 E-value=7.6e-09 Score=90.14 Aligned_cols=141 Identities=16% Similarity=0.154 Sum_probs=95.6
Q ss_pred hHHHHHHHHhhccCcccCCeEEEeCCCCcHHHHHHHHhCCCeEEEEeCChHHHHHHHHHhHHhcCCCCCcceEeeecCCC
Q 026036 61 GTFSFAEWLMHHREWIERRRCIELGSGTGALAIFLRKAMNLDITTSDYNDQEIEDNIAYNSTTNGITPALPHIKHSWGDA 140 (244)
Q Consensus 61 ~~~~l~~~~~~~~~~~~~~~VLdlG~G~G~~~~~~a~~~~~~v~~~D~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 140 (244)
.+..|..++.+.....++.+|||+-||.|.+++.+|+. ..+|+|+|++++++ +.+++|++.|++.+ +.++..+..+.
T Consensus 277 ~~ekl~~~a~~~~~~~~~~~vlDlYCGvG~f~l~lA~~-~~~V~gvEi~~~aV-~~A~~NA~~n~i~N-~~f~~~~ae~~ 353 (432)
T COG2265 277 VAEKLYETALEWLELAGGERVLDLYCGVGTFGLPLAKR-VKKVHGVEISPEAV-EAAQENAAANGIDN-VEFIAGDAEEF 353 (432)
T ss_pred HHHHHHHHHHHHHhhcCCCEEEEeccCCChhhhhhccc-CCEEEEEecCHHHH-HHHHHHHHHcCCCc-EEEEeCCHHHH
Confidence 56788888887777778889999999999999999965 88999999999998 89999999999954 44443333222
Q ss_pred CCC--CCCCccEEEEcccccCCcChHHHHHHHHHHHHhcCCCCceEeecccccCCCCCCCCCCCeEEEeeeeccCccchh
Q 026036 141 FPI--PNPDWDLILASDILLYVKQYSNLIKSLSVLLKSYKPKDSQVGHLTKNEQGEGTEGLPWPAFLMSWRRRIGKEDET 218 (244)
Q Consensus 141 ~~~--~~~~fD~I~~~~~l~~~~~~~~l~~~l~~~~~~lk~gG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 218 (244)
.+. ....+|+|+.-.+ -....+ .+++.+.+ ++|...++++ +.+.-. .
T Consensus 354 ~~~~~~~~~~d~VvvDPP--R~G~~~---~~lk~l~~-~~p~~IvYVS---------------------CNP~Tl----a 402 (432)
T COG2265 354 TPAWWEGYKPDVVVVDPP--RAGADR---EVLKQLAK-LKPKRIVYVS---------------------CNPATL----A 402 (432)
T ss_pred hhhccccCCCCEEEECCC--CCCCCH---HHHHHHHh-cCCCcEEEEe---------------------CCHHHH----H
Confidence 222 2347899998433 222222 45555554 4565555554 433332 3
Q ss_pred hHHHHHhhcCCeEEEec
Q 026036 219 IFFTSCENAGLEVKHLG 235 (244)
Q Consensus 219 ~~~~~l~~~Gf~v~~~~ 235 (244)
.-...|.+.|.+++++.
T Consensus 403 RDl~~L~~~gy~i~~v~ 419 (432)
T COG2265 403 RDLAILASTGYEIERVQ 419 (432)
T ss_pred HHHHHHHhCCeEEEEEE
Confidence 44566777788777664
|
|
| >COG1041 Predicted DNA modification methylase [DNA replication, recombination, and repair] | Back alignment and domain information |
|---|
Probab=98.97 E-value=1.8e-08 Score=84.10 Aligned_cols=121 Identities=17% Similarity=0.129 Sum_probs=89.7
Q ss_pred HHHHHHHHhhccCcccCCeEEEeCCCCcHHHHHHHHhCCCeEEEEeCChHHHHHHHHHhHHhcCCCCCcceEeeecCCCC
Q 026036 62 TFSFAEWLMHHREWIERRRCIELGSGTGALAIFLRKAMNLDITTSDYNDQEIEDNIAYNSTTNGITPALPHIKHSWGDAF 141 (244)
Q Consensus 62 ~~~l~~~~~~~~~~~~~~~VLdlG~G~G~~~~~~a~~~~~~v~~~D~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 141 (244)
...+|+.+.+.....+|..|||=-||||.+.+.+.. .+++++|+|++..|+ +-++.|....++.. .......-...+
T Consensus 182 ~P~lAR~mVNLa~v~~G~~vlDPFcGTGgiLiEagl-~G~~viG~Did~~mv-~gak~Nl~~y~i~~-~~~~~~~Da~~l 258 (347)
T COG1041 182 DPRLARAMVNLARVKRGELVLDPFCGTGGILIEAGL-MGARVIGSDIDERMV-RGAKINLEYYGIED-YPVLKVLDATNL 258 (347)
T ss_pred CHHHHHHHHHHhccccCCEeecCcCCccHHHHhhhh-cCceEeecchHHHHH-hhhhhhhhhhCcCc-eeEEEecccccC
Confidence 447888888888888999999999999999988865 499999999999998 78999988877532 111222112345
Q ss_pred CCCCCCccEEEEcccccCCcC------h-HHHHHHHHHHHHhcCCCCceEee
Q 026036 142 PIPNPDWDLILASDILLYVKQ------Y-SNLIKSLSVLLKSYKPKDSQVGH 186 (244)
Q Consensus 142 ~~~~~~fD~I~~~~~l~~~~~------~-~~l~~~l~~~~~~lk~gG~~~~~ 186 (244)
++...++|.|++ |+-|--.. . .-..++++.++++||+||++++.
T Consensus 259 pl~~~~vdaIat-DPPYGrst~~~~~~l~~Ly~~~le~~~evLk~gG~~vf~ 309 (347)
T COG1041 259 PLRDNSVDAIAT-DPPYGRSTKIKGEGLDELYEEALESASEVLKPGGRIVFA 309 (347)
T ss_pred CCCCCccceEEe-cCCCCcccccccccHHHHHHHHHHHHHHHhhcCcEEEEe
Confidence 565567999988 55443221 1 22448889999999999987775
|
|
| >PF10672 Methyltrans_SAM: S-adenosylmethionine-dependent methyltransferase; InterPro: IPR019614 Members of this entry are S-adenosylmethionine-dependent methyltransferases from gamma-proteobacterial species | Back alignment and domain information |
|---|
Probab=98.96 E-value=1.2e-09 Score=89.91 Aligned_cols=109 Identities=17% Similarity=0.157 Sum_probs=74.8
Q ss_pred cCCeEEEeCCCCcHHHHHHHHhCCCeEEEEeCChHHHHHHHHHhHHhcCCC-CCcceEeeecCCCCC--CCCCCccEEEE
Q 026036 77 ERRRCIELGSGTGALAIFLRKAMNLDITTSDYNDQEIEDNIAYNSTTNGIT-PALPHIKHSWGDAFP--IPNPDWDLILA 153 (244)
Q Consensus 77 ~~~~VLdlG~G~G~~~~~~a~~~~~~v~~~D~~~~~l~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~--~~~~~fD~I~~ 153 (244)
+|++||++-|=||.++++++..+..+|+.+|.|..++ +.+++|...|+++ .++..+..+.-+.+. ...++||+||+
T Consensus 123 ~gkrvLnlFsYTGgfsv~Aa~gGA~~v~~VD~S~~al-~~a~~N~~lNg~~~~~~~~~~~Dvf~~l~~~~~~~~fD~IIl 201 (286)
T PF10672_consen 123 KGKRVLNLFSYTGGFSVAAAAGGAKEVVSVDSSKRAL-EWAKENAALNGLDLDRHRFIQGDVFKFLKRLKKGGRFDLIIL 201 (286)
T ss_dssp TTCEEEEET-TTTHHHHHHHHTTESEEEEEES-HHHH-HHHHHHHHHTT-CCTCEEEEES-HHHHHHHHHHTT-EEEEEE
T ss_pred CCCceEEecCCCCHHHHHHHHCCCCEEEEEeCCHHHH-HHHHHHHHHcCCCccceEEEecCHHHHHHHHhcCCCCCEEEE
Confidence 6889999999999999999877677899999999987 9999999999985 334444333222111 11358999999
Q ss_pred cccccCCcC---hHHHHHHHHHHHHhcCCCCceEee
Q 026036 154 SDILLYVKQ---YSNLIKSLSVLLKSYKPKDSQVGH 186 (244)
Q Consensus 154 ~~~l~~~~~---~~~l~~~l~~~~~~lk~gG~~~~~ 186 (244)
-++-|.... ..+..+.+..+.++++|||.++.+
T Consensus 202 DPPsF~k~~~~~~~~y~~L~~~a~~ll~~gG~l~~~ 237 (286)
T PF10672_consen 202 DPPSFAKSKFDLERDYKKLLRRAMKLLKPGGLLLTC 237 (286)
T ss_dssp --SSEESSTCEHHHHHHHHHHHHHHTEEEEEEEEEE
T ss_pred CCCCCCCCHHHHHHHHHHHHHHHHHhcCCCCEEEEE
Confidence 777653322 224456788888999999976554
|
The diversity in the roles of methylation is matched by the almost bewildering number of methyltransferase enzymes that catalyse the methylation reaction. Although several classes of methyltransferase enzymes are known, the great majority of methylation reactions are catalysed by the S-adenosylmethionine-dependent methyltransferases. SAM (S-adenosylmethionine, also known as AdoMet) is well known as the methyl donor for the majority of methyltransferases that modify DNA, RNA, histones and other proteins, dictating replicational, transcriptional and translational fidelity, mismatch repair, chromatin modelling, epigenetic modifications and imprinting [].; GO: 0008168 methyltransferase activity; PDB: 2IGT_B 1WXX_A 1WXW_D 2CWW_B 2AS0_B 3V8V_B 3V97_A 3C0K_A 2B78_A 3LDF_A. |
| >TIGR02143 trmA_only tRNA (uracil-5-)-methyltransferase | Back alignment and domain information |
|---|
Probab=98.96 E-value=9.1e-09 Score=87.97 Aligned_cols=114 Identities=12% Similarity=0.137 Sum_probs=72.8
Q ss_pred hHHHHHHHHhhccCcccCCeEEEeCCCCcHHHHHHHHhCCCeEEEEeCChHHHHHHHHHhHHhcCCCCCcceEeeecCCC
Q 026036 61 GTFSFAEWLMHHREWIERRRCIELGSGTGALAIFLRKAMNLDITTSDYNDQEIEDNIAYNSTTNGITPALPHIKHSWGDA 140 (244)
Q Consensus 61 ~~~~l~~~~~~~~~~~~~~~VLdlG~G~G~~~~~~a~~~~~~v~~~D~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 140 (244)
....|.+++.+.... .+.+|||+|||+|.+++.+++. ..+|+++|++++++ +.+++|+..|++. ++..+..+..+.
T Consensus 182 ~~~~l~~~v~~~~~~-~~~~vlDl~~G~G~~sl~la~~-~~~v~~vE~~~~av-~~a~~n~~~~~~~-~v~~~~~d~~~~ 257 (353)
T TIGR02143 182 VNIKMLEWACEVTQG-SKGDLLELYCGNGNFSLALAQN-FRRVLATEIAKPSV-NAAQYNIAANNID-NVQIIRMSAEEF 257 (353)
T ss_pred HHHHHHHHHHHHhhc-CCCcEEEEeccccHHHHHHHHh-CCEEEEEECCHHHH-HHHHHHHHHcCCC-cEEEEEcCHHHH
Confidence 355666666554432 2347999999999999999876 46899999999997 8899999998874 244443333221
Q ss_pred CCC----------C-----CCCccEEEEcccccCCcChHHHHHHHHHHHHhcCCCCceEee
Q 026036 141 FPI----------P-----NPDWDLILASDILLYVKQYSNLIKSLSVLLKSYKPKDSQVGH 186 (244)
Q Consensus 141 ~~~----------~-----~~~fD~I~~~~~l~~~~~~~~l~~~l~~~~~~lk~gG~~~~~ 186 (244)
++. . ...||+|+.-++ . ....+ ++++.+.+ |++.++++
T Consensus 258 ~~~~~~~~~~~~~~~~~~~~~~~d~v~lDPP-R-~G~~~---~~l~~l~~---~~~ivYvs 310 (353)
T TIGR02143 258 TQAMNGVREFRRLKGIDLKSYNCSTIFVDPP-R-AGLDP---DTCKLVQA---YERILYIS 310 (353)
T ss_pred HHHHhhccccccccccccccCCCCEEEECCC-C-CCCcH---HHHHHHHc---CCcEEEEE
Confidence 110 0 124899988544 2 22223 44454443 66655554
|
This family consists exclusively of proteins believed to act as tRNA (uracil-5-)-methyltransferase. All members of far are proteobacterial. The seed alignment was taken directly from pfam05958 in Pfam 12.0, but higher cutoffs are used to select only functionally equivalent proteins. Homologous proteins excluded by the higher cutoff scores of this model include other uracil methyltransferases, such as RumA, active on rRNA. |
| >PF01596 Methyltransf_3: O-methyltransferase; InterPro: IPR002935 Members of this family are O-methyltransferases | Back alignment and domain information |
|---|
Probab=98.96 E-value=9.7e-10 Score=86.60 Aligned_cols=115 Identities=18% Similarity=0.253 Sum_probs=79.8
Q ss_pred HHHHHhhccCcccCCeEEEeCCCCcHHHHHHHHhC--CCeEEEEeCChHHHHHHHHHhHHhcCCCCCcceEeeecCCCCC
Q 026036 65 FAEWLMHHREWIERRRCIELGSGTGALAIFLRKAM--NLDITTSDYNDQEIEDNIAYNSTTNGITPALPHIKHSWGDAFP 142 (244)
Q Consensus 65 l~~~~~~~~~~~~~~~VLdlG~G~G~~~~~~a~~~--~~~v~~~D~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 142 (244)
..+++.......+.++||||||++|..++.+|+.. +.+|+.+|.+++.. +.++++....++..++..+..+..+.++
T Consensus 33 ~g~lL~~l~~~~~~k~vLEIGt~~GySal~la~~l~~~g~i~tiE~~~~~~-~~A~~~~~~ag~~~~I~~~~gda~~~l~ 111 (205)
T PF01596_consen 33 TGQLLQMLVRLTRPKRVLEIGTFTGYSALWLAEALPEDGKITTIEIDPERA-EIARENFRKAGLDDRIEVIEGDALEVLP 111 (205)
T ss_dssp HHHHHHHHHHHHT-SEEEEESTTTSHHHHHHHHTSTTTSEEEEEESSHHHH-HHHHHHHHHTTGGGGEEEEES-HHHHHH
T ss_pred HHHHHHHHHHhcCCceEEEeccccccHHHHHHHhhcccceEEEecCcHHHH-HHHHHHHHhcCCCCcEEEEEeccHhhHH
Confidence 33343333334466799999999999999999765 57999999999876 8888898888875554444332222111
Q ss_pred -----CCCCCccEEEEcccccCCcChHHHHHHHHHHHHhcCCCCceEee
Q 026036 143 -----IPNPDWDLILASDILLYVKQYSNLIKSLSVLLKSYKPKDSQVGH 186 (244)
Q Consensus 143 -----~~~~~fD~I~~~~~l~~~~~~~~l~~~l~~~~~~lk~gG~~~~~ 186 (244)
...++||+|+. |.- ..+-...+..+.++|+|||.+++-
T Consensus 112 ~l~~~~~~~~fD~VFi-Da~-----K~~y~~y~~~~~~ll~~ggvii~D 154 (205)
T PF01596_consen 112 ELANDGEEGQFDFVFI-DAD-----KRNYLEYFEKALPLLRPGGVIIAD 154 (205)
T ss_dssp HHHHTTTTTSEEEEEE-EST-----GGGHHHHHHHHHHHEEEEEEEEEE
T ss_pred HHHhccCCCceeEEEE-ccc-----ccchhhHHHHHhhhccCCeEEEEc
Confidence 11357999997 331 334557888889999999987765
|
The family includes also bacterial O-methyltransferases that may be involved in antibiotic production [].; GO: 0008171 O-methyltransferase activity; PDB: 1SUI_C 1SUS_D 3CBG_A 2GPY_B 3TR6_A 2AVD_A 3DUL_B 3DUW_B 2ZTH_A 1VID_A .... |
| >TIGR00417 speE spermidine synthase | Back alignment and domain information |
|---|
Probab=98.96 E-value=5.4e-09 Score=86.27 Aligned_cols=108 Identities=15% Similarity=0.131 Sum_probs=69.4
Q ss_pred cCCeEEEeCCCCcHHHHHHHHhC-CCeEEEEeCChHHHHHHHHHhHHhcCCCCCcceEeeecCCCC---CCCCCCccEEE
Q 026036 77 ERRRCIELGSGTGALAIFLRKAM-NLDITTSDYNDQEIEDNIAYNSTTNGITPALPHIKHSWGDAF---PIPNPDWDLIL 152 (244)
Q Consensus 77 ~~~~VLdlG~G~G~~~~~~a~~~-~~~v~~~D~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~fD~I~ 152 (244)
.+++||+||||+|..+..+++.. ..+|+++|++++++ +.++++............+.+..+|.. ....++||+|+
T Consensus 72 ~p~~VL~iG~G~G~~~~~ll~~~~~~~v~~veid~~vi-~~a~~~~~~~~~~~~~~~v~i~~~D~~~~l~~~~~~yDvIi 150 (270)
T TIGR00417 72 NPKHVLVIGGGDGGVLREVLKHKSVEKATLVDIDEKVI-ELSKKFLPSLAGSYDDPRVDLQIDDGFKFLADTENTFDVII 150 (270)
T ss_pred CCCEEEEEcCCchHHHHHHHhCCCcceEEEEeCCHHHH-HHHHHHhHhhcccccCCceEEEECchHHHHHhCCCCccEEE
Confidence 34599999999999988887665 56899999999886 777765432211001112222223322 12246899999
Q ss_pred EcccccCCcChHH--HHHHHHHHHHhcCCCCceEee
Q 026036 153 ASDILLYVKQYSN--LIKSLSVLLKSYKPKDSQVGH 186 (244)
Q Consensus 153 ~~~~l~~~~~~~~--l~~~l~~~~~~lk~gG~~~~~ 186 (244)
+.... ....... ....++.+.+.|+|||.+++.
T Consensus 151 ~D~~~-~~~~~~~l~~~ef~~~~~~~L~pgG~lv~~ 185 (270)
T TIGR00417 151 VDSTD-PVGPAETLFTKEFYELLKKALNEDGIFVAQ 185 (270)
T ss_pred EeCCC-CCCcccchhHHHHHHHHHHHhCCCcEEEEc
Confidence 85442 1111111 247788999999999998876
|
the SpeE subunit of spermidine synthase catalysesthe reaction (putrescine + S-adenosylmethioninamine = spermidine + 5'-methylthioadenosine) and is involved in polyamine biosynthesis and in the biosynthesis of spermidine from arganine. The region between residues 77 and 120 of the seed alignment is thought to be involved in binding to decarboxylated SAM. |
| >PF05891 Methyltransf_PK: AdoMet dependent proline di-methyltransferase; InterPro: IPR008576 This family consists of several eukaryotic proteins of unknown function that are S-adenosyl-L-methionine-dependent methyltransferase-like | Back alignment and domain information |
|---|
Probab=98.94 E-value=6.6e-09 Score=81.27 Aligned_cols=145 Identities=14% Similarity=0.098 Sum_probs=87.6
Q ss_pred cCCeEEEeCCCCcHHHHHHHHhCCCeEEEEeCChHHHHHHHHHhHHhcCCCCCcc-eEeeecCCCCCCCCCCccEEEEcc
Q 026036 77 ERRRCIELGSGTGALAIFLRKAMNLDITTSDYNDQEIEDNIAYNSTTNGITPALP-HIKHSWGDAFPIPNPDWDLILASD 155 (244)
Q Consensus 77 ~~~~VLdlG~G~G~~~~~~a~~~~~~v~~~D~~~~~l~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~fD~I~~~~ 155 (244)
...+.||.|||.|.++..+......+|..+|..+..+ +.++....... .++. .......+- .....+||+|.+--
T Consensus 55 ~~~~alDcGAGIGRVTk~lLl~~f~~VDlVEp~~~Fl-~~a~~~l~~~~--~~v~~~~~~gLQ~f-~P~~~~YDlIW~QW 130 (218)
T PF05891_consen 55 KFNRALDCGAGIGRVTKGLLLPVFDEVDLVEPVEKFL-EQAKEYLGKDN--PRVGEFYCVGLQDF-TPEEGKYDLIWIQW 130 (218)
T ss_dssp --SEEEEET-TTTHHHHHTCCCC-SEEEEEES-HHHH-HHHHHHTCCGG--CCEEEEEES-GGG-----TT-EEEEEEES
T ss_pred CcceEEecccccchhHHHHHHHhcCEeEEeccCHHHH-HHHHHHhcccC--CCcceEEecCHhhc-cCCCCcEeEEEehH
Confidence 4569999999999999877555578899999999876 66654433211 1111 111111111 11235899999999
Q ss_pred cccCCcChHHHHHHHHHHHHhcCCCCceEeecccccCCCCCCCCCCCeEEEeeeeccCccchhhHHHHHhhcCCeEEEec
Q 026036 156 ILLYVKQYSNLIKSLSVLLKSYKPKDSQVGHLTKNEQGEGTEGLPWPAFLMSWRRRIGKEDETIFFTSCENAGLEVKHLG 235 (244)
Q Consensus 156 ~l~~~~~~~~l~~~l~~~~~~lk~gG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gf~v~~~~ 235 (244)
|+ -|....++++.|+++...|+|+|.+++-......... .+......-..+...|.++++++|++++...
T Consensus 131 ~l-ghLTD~dlv~fL~RCk~~L~~~G~IvvKEN~~~~~~~---------~~D~~DsSvTRs~~~~~~lF~~AGl~~v~~~ 200 (218)
T PF05891_consen 131 CL-GHLTDEDLVAFLKRCKQALKPNGVIVVKENVSSSGFD---------EFDEEDSSVTRSDEHFRELFKQAGLRLVKEE 200 (218)
T ss_dssp -G-GGS-HHHHHHHHHHHHHHEEEEEEEEEEEEEESSSEE---------EEETTTTEEEEEHHHHHHHHHHCT-EEEEEE
T ss_pred hh-ccCCHHHHHHHHHHHHHhCcCCcEEEEEecCCCCCCc---------ccCCccCeeecCHHHHHHHHHHcCCEEEEec
Confidence 99 7788899999999999999999977776332221110 1101111111235789999999999988754
|
; GO: 0008168 methyltransferase activity; PDB: 1XTP_A 2EX4_B. |
| >PLN02232 ubiquinone biosynthesis methyltransferase | Back alignment and domain information |
|---|
Probab=98.94 E-value=1.3e-09 Score=82.95 Aligned_cols=128 Identities=11% Similarity=0.031 Sum_probs=76.3
Q ss_pred EEEeCChHHHHHHHHHhHHhcC--CCCCcceEeeecCCCCCCCCCCccEEEEcccccCCcChHHHHHHHHHHHHhcCCCC
Q 026036 104 TTSDYNDQEIEDNIAYNSTTNG--ITPALPHIKHSWGDAFPIPNPDWDLILASDILLYVKQYSNLIKSLSVLLKSYKPKD 181 (244)
Q Consensus 104 ~~~D~~~~~l~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~fD~I~~~~~l~~~~~~~~l~~~l~~~~~~lk~gG 181 (244)
+|+|+|++|+ +.++++..... ...++..+..+. ..+++.+++||+|+++.++.+. ++..+.+++++++|||||
T Consensus 1 ~GvD~S~~ML-~~A~~~~~~~~~~~~~~i~~~~~d~-~~lp~~~~~fD~v~~~~~l~~~---~d~~~~l~ei~rvLkpGG 75 (160)
T PLN02232 1 MGLDFSSEQL-AVAATRQSLKARSCYKCIEWIEGDA-IDLPFDDCEFDAVTMGYGLRNV---VDRLRAMKEMYRVLKPGS 75 (160)
T ss_pred CeEcCCHHHH-HHHHHhhhcccccCCCceEEEEech-hhCCCCCCCeeEEEecchhhcC---CCHHHHHHHHHHHcCcCe
Confidence 4899999998 66655443211 112334443333 3456777799999999988433 456699999999999999
Q ss_pred ceEeecccccCCCCC------CC---CCCCe-EEE---eee------eccCccchhhHHHHHhhcCCeEEEeccEE
Q 026036 182 SQVGHLTKNEQGEGT------EG---LPWPA-FLM---SWR------RRIGKEDETIFFTSCENAGLEVKHLGSRV 238 (244)
Q Consensus 182 ~~~~~~~~~~~~~~~------~~---~~~~~-~~~---~~~------~~~~~~~~~~~~~~l~~~Gf~v~~~~~~~ 238 (244)
++++......+.... .. ..... +.. .++ ..+ .+.+++.++++++||+..+.....
T Consensus 76 ~l~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~yl~~si~~f--~~~~el~~ll~~aGF~~~~~~~~~ 149 (160)
T PLN02232 76 RVSILDFNKSNQSVTTFMQGWMIDNVVVPVATVYDLAKEYEYLKYSINGY--LTGEELETLALEAGFSSACHYEIS 149 (160)
T ss_pred EEEEEECCCCChHHHHHHHHHHccchHhhhhHHhCChHHHHhHHHHHHHC--cCHHHHHHHHHHcCCCcceEEECc
Confidence 998874433221100 00 00000 000 000 122 236888999999999876654433
|
|
| >PF02475 Met_10: Met-10+ like-protein; InterPro: IPR003402 This entry represents the Trm5 family | Back alignment and domain information |
|---|
Probab=98.89 E-value=4.8e-09 Score=82.11 Aligned_cols=98 Identities=13% Similarity=0.132 Sum_probs=68.5
Q ss_pred cccCCeEEEeCCCCcHHHHHHHHhC-CCeEEEEeCChHHHHHHHHHhHHhcCCCCCcceEeeecCCCCCCCCCCccEEEE
Q 026036 75 WIERRRCIELGSGTGALAIFLRKAM-NLDITTSDYNDQEIEDNIAYNSTTNGITPALPHIKHSWGDAFPIPNPDWDLILA 153 (244)
Q Consensus 75 ~~~~~~VLdlG~G~G~~~~~~a~~~-~~~v~~~D~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fD~I~~ 153 (244)
..+|..|+|+.||.|.+++.+|+.. +++|+++|+++.++ +.+++|+..|++..++..+..|..+..+ ...||-|++
T Consensus 99 v~~~e~VlD~faGIG~f~l~~ak~~~~~~V~A~d~Np~a~-~~L~~Ni~lNkv~~~i~~~~~D~~~~~~--~~~~drvim 175 (200)
T PF02475_consen 99 VKPGEVVLDMFAGIGPFSLPIAKHGKAKRVYAVDLNPDAV-EYLKENIRLNKVENRIEVINGDAREFLP--EGKFDRVIM 175 (200)
T ss_dssp --TT-EEEETT-TTTTTHHHHHHHT-SSEEEEEES-HHHH-HHHHHHHHHTT-TTTEEEEES-GGG-----TT-EEEEEE
T ss_pred CCcceEEEEccCCccHHHHHHhhhcCccEEEEecCCHHHH-HHHHHHHHHcCCCCeEEEEcCCHHHhcC--ccccCEEEE
Confidence 4578999999999999999999844 77899999999987 8999999999998776666665544433 578999999
Q ss_pred cccccCCcChHHHHHHHHHHHHhcCCCCc
Q 026036 154 SDILLYVKQYSNLIKSLSVLLKSYKPKDS 182 (244)
Q Consensus 154 ~~~l~~~~~~~~l~~~l~~~~~~lk~gG~ 182 (244)
+.+- . .. ..+..+.+++++||.
T Consensus 176 ~lp~-~---~~---~fl~~~~~~~~~~g~ 197 (200)
T PF02475_consen 176 NLPE-S---SL---EFLDAALSLLKEGGI 197 (200)
T ss_dssp --TS-S---GG---GGHHHHHHHEEEEEE
T ss_pred CChH-H---HH---HHHHHHHHHhcCCcE
Confidence 7653 1 12 456667888888874
|
Trm5 specifically methylates the N1 position of guanosine-37 in various tRNAs [, , ]. Another members of this family, tRNA wybutosine-synthesizing protein 2 (Tyw2) and its homologues, are S-adenosyl-L-methionine-dependent transferases that act as a component of the wybutosine biosynthesis pathway [, ]. tRNA wybutosine-synthesizing protein 2 was originally thought to be a methyltransferase [].; GO: 0016740 transferase activity; PDB: 3A27_A 2ZZN_B 2YX1_A 2ZZM_A 3AY0_B 3K6R_A 3A26_A 3A25_A. |
| >PRK04338 N(2),N(2)-dimethylguanosine tRNA methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=98.89 E-value=1.3e-08 Score=87.57 Aligned_cols=99 Identities=16% Similarity=0.134 Sum_probs=71.1
Q ss_pred CCeEEEeCCCCcHHHHHHHHhCC-CeEEEEeCChHHHHHHHHHhHHhcCCCCCcceEeeecCCCCCCCCCCccEEEEccc
Q 026036 78 RRRCIELGSGTGALAIFLRKAMN-LDITTSDYNDQEIEDNIAYNSTTNGITPALPHIKHSWGDAFPIPNPDWDLILASDI 156 (244)
Q Consensus 78 ~~~VLdlG~G~G~~~~~~a~~~~-~~v~~~D~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fD~I~~~~~ 156 (244)
+.+|||++||+|..++.++...+ .+|+++|+++.++ +.+++|+..|++.. +.....+....+.. .++||+|++ |+
T Consensus 58 ~~~vLDl~aGsG~~~l~~a~~~~~~~V~a~Din~~Av-~~a~~N~~~N~~~~-~~v~~~Da~~~l~~-~~~fD~V~l-DP 133 (382)
T PRK04338 58 RESVLDALSASGIRGIRYALETGVEKVTLNDINPDAV-ELIKKNLELNGLEN-EKVFNKDANALLHE-ERKFDVVDI-DP 133 (382)
T ss_pred CCEEEECCCcccHHHHHHHHHCCCCEEEEEeCCHHHH-HHHHHHHHHhCCCc-eEEEhhhHHHHHhh-cCCCCEEEE-CC
Confidence 46899999999999999987654 5899999999987 89999999998742 22222222111111 357999998 55
Q ss_pred ccCCcChHHHHHHHHHHHHhcCCCCceEee
Q 026036 157 LLYVKQYSNLIKSLSVLLKSYKPKDSQVGH 186 (244)
Q Consensus 157 l~~~~~~~~l~~~l~~~~~~lk~gG~~~~~ 186 (244)
. .... ..+....+.+++||.++++
T Consensus 134 ~---Gs~~---~~l~~al~~~~~~gilyvS 157 (382)
T PRK04338 134 F---GSPA---PFLDSAIRSVKRGGLLCVT 157 (382)
T ss_pred C---CCcH---HHHHHHHHHhcCCCEEEEE
Confidence 3 2222 5666666778999999888
|
|
| >PRK14896 ksgA 16S ribosomal RNA methyltransferase KsgA/Dim1 family protein; Provisional | Back alignment and domain information |
|---|
Probab=98.88 E-value=1.5e-08 Score=83.12 Aligned_cols=88 Identities=15% Similarity=0.206 Sum_probs=62.3
Q ss_pred HHHHHHHhhccCcccCCeEEEeCCCCcHHHHHHHHhCCCeEEEEeCChHHHHHHHHHhHHhcCCCCCcceEeeecCCCCC
Q 026036 63 FSFAEWLMHHREWIERRRCIELGSGTGALAIFLRKAMNLDITTSDYNDQEIEDNIAYNSTTNGITPALPHIKHSWGDAFP 142 (244)
Q Consensus 63 ~~l~~~~~~~~~~~~~~~VLdlG~G~G~~~~~~a~~~~~~v~~~D~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 142 (244)
..+++.+.+.....++.+|||+|||+|.++..+++. +.+|+++|+++.++ +.++++... . .+ +.+..+|...
T Consensus 15 ~~~~~~iv~~~~~~~~~~VLEIG~G~G~lt~~L~~~-~~~v~~vEid~~~~-~~l~~~~~~--~-~~---v~ii~~D~~~ 86 (258)
T PRK14896 15 DRVVDRIVEYAEDTDGDPVLEIGPGKGALTDELAKR-AKKVYAIELDPRLA-EFLRDDEIA--A-GN---VEIIEGDALK 86 (258)
T ss_pred HHHHHHHHHhcCCCCcCeEEEEeCccCHHHHHHHHh-CCEEEEEECCHHHH-HHHHHHhcc--C-CC---EEEEEecccc
Confidence 344555555555667889999999999999999987 67999999999987 677666542 1 12 3333444443
Q ss_pred CCCCCccEEEEccccc
Q 026036 143 IPNPDWDLILASDILL 158 (244)
Q Consensus 143 ~~~~~fD~I~~~~~l~ 158 (244)
.....||.|++|.+++
T Consensus 87 ~~~~~~d~Vv~NlPy~ 102 (258)
T PRK14896 87 VDLPEFNKVVSNLPYQ 102 (258)
T ss_pred CCchhceEEEEcCCcc
Confidence 3334689999988853
|
|
| >COG3963 Phospholipid N-methyltransferase [Lipid metabolism] | Back alignment and domain information |
|---|
Probab=98.87 E-value=8.7e-08 Score=71.38 Aligned_cols=127 Identities=16% Similarity=0.079 Sum_probs=92.2
Q ss_pred ceeechHHHHHHHHhhccCcccCCeEEEeCCCCcHHHHHHHHhC--CCeEEEEeCChHHHHHHHHHhHHhcCCCCCcceE
Q 026036 56 NFLWPGTFSFAEWLMHHREWIERRRCIELGSGTGALAIFLRKAM--NLDITTSDYNDQEIEDNIAYNSTTNGITPALPHI 133 (244)
Q Consensus 56 ~~~w~~~~~l~~~~~~~~~~~~~~~VLdlG~G~G~~~~~~a~~~--~~~v~~~D~~~~~l~~~~~~~~~~~~~~~~~~~~ 133 (244)
+.+-|++-.+|+.+........|..|||+|.|||.++.++...+ ...+++++.|++-+ ..+.+.- .+. ..+
T Consensus 27 GaI~PsSs~lA~~M~s~I~pesglpVlElGPGTGV~TkaIL~~gv~~~~L~~iE~~~dF~-~~L~~~~--p~~----~ii 99 (194)
T COG3963 27 GAILPSSSILARKMASVIDPESGLPVLELGPGTGVITKAILSRGVRPESLTAIEYSPDFV-CHLNQLY--PGV----NII 99 (194)
T ss_pred eeecCCcHHHHHHHHhccCcccCCeeEEEcCCccHhHHHHHhcCCCccceEEEEeCHHHH-HHHHHhC--CCc----ccc
Confidence 45678899999999998888899999999999999999988877 56799999999865 3333221 111 112
Q ss_pred eeecCC----CCCCCCCCccEEEEcccccCCcChHHHHHHHHHHHHhcCCCCceEeecccc
Q 026036 134 KHSWGD----AFPIPNPDWDLILASDILLYVKQYSNLIKSLSVLLKSYKPKDSQVGHLTKN 190 (244)
Q Consensus 134 ~~~~~~----~~~~~~~~fD~I~~~~~l~~~~~~~~l~~~l~~~~~~lk~gG~~~~~~~~~ 190 (244)
..+..+ .-...++.||.|+|.-++ -......-.+.++.+...+.+||.++-..+..
T Consensus 100 ~gda~~l~~~l~e~~gq~~D~viS~lPl-l~~P~~~~iaile~~~~rl~~gg~lvqftYgp 159 (194)
T COG3963 100 NGDAFDLRTTLGEHKGQFFDSVISGLPL-LNFPMHRRIAILESLLYRLPAGGPLVQFTYGP 159 (194)
T ss_pred ccchhhHHHHHhhcCCCeeeeEEecccc-ccCcHHHHHHHHHHHHHhcCCCCeEEEEEecC
Confidence 222111 112345689999998877 33444566688999999999999888776663
|
|
| >PTZ00338 dimethyladenosine transferase-like protein; Provisional | Back alignment and domain information |
|---|
Probab=98.85 E-value=2e-08 Score=83.53 Aligned_cols=89 Identities=15% Similarity=0.209 Sum_probs=64.4
Q ss_pred HHHHHHhhccCcccCCeEEEeCCCCcHHHHHHHHhCCCeEEEEeCChHHHHHHHHHhHHhcCCCCCcceEeeecCCCCCC
Q 026036 64 SFAEWLMHHREWIERRRCIELGSGTGALAIFLRKAMNLDITTSDYNDQEIEDNIAYNSTTNGITPALPHIKHSWGDAFPI 143 (244)
Q Consensus 64 ~l~~~~~~~~~~~~~~~VLdlG~G~G~~~~~~a~~~~~~v~~~D~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 143 (244)
.+.+.+.......++.+|||||||+|.++..++.. +.+|+++|+++.++ +.++++....+...+ +.+..+|.+..
T Consensus 23 ~i~~~Iv~~~~~~~~~~VLEIG~G~G~LT~~Ll~~-~~~V~avEiD~~li-~~l~~~~~~~~~~~~---v~ii~~Dal~~ 97 (294)
T PTZ00338 23 LVLDKIVEKAAIKPTDTVLEIGPGTGNLTEKLLQL-AKKVIAIEIDPRMV-AELKKRFQNSPLASK---LEVIEGDALKT 97 (294)
T ss_pred HHHHHHHHhcCCCCcCEEEEecCchHHHHHHHHHh-CCcEEEEECCHHHH-HHHHHHHHhcCCCCc---EEEEECCHhhh
Confidence 34555555556668889999999999999999876 67899999999987 788877765443222 33444454444
Q ss_pred CCCCccEEEEcccc
Q 026036 144 PNPDWDLILASDIL 157 (244)
Q Consensus 144 ~~~~fD~I~~~~~l 157 (244)
....||.|++|-+.
T Consensus 98 ~~~~~d~VvaNlPY 111 (294)
T PTZ00338 98 EFPYFDVCVANVPY 111 (294)
T ss_pred cccccCEEEecCCc
Confidence 44578999987775
|
|
| >PF01170 UPF0020: Putative RNA methylase family UPF0020; InterPro: IPR000241 This domain is probably a methylase | Back alignment and domain information |
|---|
Probab=98.85 E-value=8.8e-08 Score=74.15 Aligned_cols=116 Identities=19% Similarity=0.225 Sum_probs=74.3
Q ss_pred HHHHHHHHhhccCcccCCeEEEeCCCCcHHHHHHHHhC-CCe---------EEEEeCChHHHHHHHHHhHHhcCCCCCcc
Q 026036 62 TFSFAEWLMHHREWIERRRCIELGSGTGALAIFLRKAM-NLD---------ITTSDYNDQEIEDNIAYNSTTNGITPALP 131 (244)
Q Consensus 62 ~~~l~~~~~~~~~~~~~~~VLdlG~G~G~~~~~~a~~~-~~~---------v~~~D~~~~~l~~~~~~~~~~~~~~~~~~ 131 (244)
...+|..+.......++..|||-.||+|.+.+..+... ... ++|.|++++++ +.++.|+...+....+.
T Consensus 13 ~~~lA~~ll~la~~~~~~~vlDP~CGsGtiliEaa~~~~~~~~~~~~~~~~~~g~Di~~~~v-~~a~~N~~~ag~~~~i~ 91 (179)
T PF01170_consen 13 RPTLAAALLNLAGWRPGDVVLDPFCGSGTILIEAALMGANIPPLNDINELKIIGSDIDPKAV-RGARENLKAAGVEDYID 91 (179)
T ss_dssp -HHHHHHHHHHTT--TTS-EEETT-TTSHHHHHHHHHHTTTSTTTH-CH--EEEEESSHHHH-HHHHHHHHHTT-CGGEE
T ss_pred CHHHHHHHHHHhCCCCCCEEeecCCCCCHHHHHHHHHhhCcccccccccccEEecCCCHHHH-HHHHHHHHhcccCCceE
Confidence 45677777776777788999999999999998877654 333 88999999997 88999998887754444
Q ss_pred eEeeecCCCCCCCCCCccEEEEcccccCCcCh-HHH----HHHHHHHHHhcCC
Q 026036 132 HIKHSWGDAFPIPNPDWDLILASDILLYVKQY-SNL----IKSLSVLLKSYKP 179 (244)
Q Consensus 132 ~~~~~~~~~~~~~~~~fD~I~~~~~l~~~~~~-~~l----~~~l~~~~~~lk~ 179 (244)
....+.. .++...+++|+|+++.++-.-... ..+ .++++++.+++++
T Consensus 92 ~~~~D~~-~l~~~~~~~d~IvtnPPyG~r~~~~~~~~~ly~~~~~~~~~~l~~ 143 (179)
T PF01170_consen 92 FIQWDAR-ELPLPDGSVDAIVTNPPYGRRLGSKKDLEKLYRQFLRELKRVLKP 143 (179)
T ss_dssp EEE--GG-GGGGTTSBSCEEEEE--STTSHCHHHHHHHHHHHHHHHHHCHSTT
T ss_pred EEecchh-hcccccCCCCEEEECcchhhhccCHHHHHHHHHHHHHHHHHHCCC
Confidence 4333332 233445689999998886322121 112 2456777888887
|
It is associated with the THUMP domain that also occurs with RNA modification domains [].; PDB: 3LDU_A 3LDG_A 3K0B_A 3V8V_B 3V97_A 3TLJ_A 3TM5_B 3TM4_A 3TMA_A. |
| >PLN02589 caffeoyl-CoA O-methyltransferase | Back alignment and domain information |
|---|
Probab=98.84 E-value=1.7e-08 Score=81.76 Aligned_cols=104 Identities=16% Similarity=0.105 Sum_probs=76.2
Q ss_pred ccCCeEEEeCCCCcHHHHHHHHhC--CCeEEEEeCChHHHHHHHHHhHHhcCCCCCcceEeeecCCCCCC------CCCC
Q 026036 76 IERRRCIELGSGTGALAIFLRKAM--NLDITTSDYNDQEIEDNIAYNSTTNGITPALPHIKHSWGDAFPI------PNPD 147 (244)
Q Consensus 76 ~~~~~VLdlG~G~G~~~~~~a~~~--~~~v~~~D~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~ 147 (244)
.+.++|||||+++|..++.+|... ..+|+.+|.+++.. +.++.+....++..++..+..+..+.++. ..++
T Consensus 78 ~~ak~iLEiGT~~GySal~la~al~~~g~v~tiE~~~~~~-~~Ar~~~~~ag~~~~I~~~~G~a~e~L~~l~~~~~~~~~ 156 (247)
T PLN02589 78 INAKNTMEIGVYTGYSLLATALALPEDGKILAMDINRENY-ELGLPVIQKAGVAHKIDFREGPALPVLDQMIEDGKYHGT 156 (247)
T ss_pred hCCCEEEEEeChhhHHHHHHHhhCCCCCEEEEEeCCHHHH-HHHHHHHHHCCCCCceEEEeccHHHHHHHHHhccccCCc
Confidence 355799999999999999998764 56899999999875 88888988888766555443333222221 1358
Q ss_pred ccEEEEcccccCCcChHHHHHHHHHHHHhcCCCCceEee
Q 026036 148 WDLILASDILLYVKQYSNLIKSLSVLLKSYKPKDSQVGH 186 (244)
Q Consensus 148 fD~I~~~~~l~~~~~~~~l~~~l~~~~~~lk~gG~~~~~ 186 (244)
||+|+. |. ....-...+..+.++|+|||.+++-
T Consensus 157 fD~iFi-Da-----dK~~Y~~y~~~~l~ll~~GGviv~D 189 (247)
T PLN02589 157 FDFIFV-DA-----DKDNYINYHKRLIDLVKVGGVIGYD 189 (247)
T ss_pred ccEEEe-cC-----CHHHhHHHHHHHHHhcCCCeEEEEc
Confidence 999987 32 2344558888889999999976664
|
|
| >PRK00274 ksgA 16S ribosomal RNA methyltransferase KsgA/Dim1 family protein; Reviewed | Back alignment and domain information |
|---|
Probab=98.83 E-value=1.7e-08 Score=83.38 Aligned_cols=86 Identities=14% Similarity=0.067 Sum_probs=58.0
Q ss_pred HHHHHhhccCcccCCeEEEeCCCCcHHHHHHHHhCCCeEEEEeCChHHHHHHHHHhHHhcCCCCCcceEeeecCCCCCCC
Q 026036 65 FAEWLMHHREWIERRRCIELGSGTGALAIFLRKAMNLDITTSDYNDQEIEDNIAYNSTTNGITPALPHIKHSWGDAFPIP 144 (244)
Q Consensus 65 l~~~~~~~~~~~~~~~VLdlG~G~G~~~~~~a~~~~~~v~~~D~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 144 (244)
+++.+.+.....++.+|||+|||+|.++..++..+ .+|+++|+++.++ +.++++... .++..+..+..+ .+..
T Consensus 30 i~~~i~~~l~~~~~~~VLEiG~G~G~lt~~L~~~~-~~v~avE~d~~~~-~~~~~~~~~----~~v~~i~~D~~~-~~~~ 102 (272)
T PRK00274 30 ILDKIVDAAGPQPGDNVLEIGPGLGALTEPLLERA-AKVTAVEIDRDLA-PILAETFAE----DNLTIIEGDALK-VDLS 102 (272)
T ss_pred HHHHHHHhcCCCCcCeEEEeCCCccHHHHHHHHhC-CcEEEEECCHHHH-HHHHHhhcc----CceEEEEChhhc-CCHH
Confidence 44555555566688899999999999999999884 5999999999987 667665432 223333333322 1221
Q ss_pred CCCccEEEEcccc
Q 026036 145 NPDWDLILASDIL 157 (244)
Q Consensus 145 ~~~fD~I~~~~~l 157 (244)
+-.+|.|++|.+.
T Consensus 103 ~~~~~~vv~NlPY 115 (272)
T PRK00274 103 ELQPLKVVANLPY 115 (272)
T ss_pred HcCcceEEEeCCc
Confidence 1115899998774
|
|
| >PLN02366 spermidine synthase | Back alignment and domain information |
|---|
Probab=98.81 E-value=4.7e-08 Score=81.78 Aligned_cols=107 Identities=13% Similarity=0.156 Sum_probs=70.1
Q ss_pred cCCeEEEeCCCCcHHHHHHHHhC-CCeEEEEeCChHHHHHHHHHhHHhcCCCCCcceEeeecCCCC---CC-CCCCccEE
Q 026036 77 ERRRCIELGSGTGALAIFLRKAM-NLDITTSDYNDQEIEDNIAYNSTTNGITPALPHIKHSWGDAF---PI-PNPDWDLI 151 (244)
Q Consensus 77 ~~~~VLdlG~G~G~~~~~~a~~~-~~~v~~~D~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~-~~~~fD~I 151 (244)
..++||+||||.|.....+++.. ..+|+.+|+++.++ +.+++.....+....-..+++..+|.. .. ..++||+|
T Consensus 91 ~pkrVLiIGgG~G~~~rellk~~~v~~V~~VEiD~~Vi-~~ar~~f~~~~~~~~dpRv~vi~~Da~~~l~~~~~~~yDvI 169 (308)
T PLN02366 91 NPKKVLVVGGGDGGVLREIARHSSVEQIDICEIDKMVI-DVSKKFFPDLAVGFDDPRVNLHIGDGVEFLKNAPEGTYDAI 169 (308)
T ss_pred CCCeEEEEcCCccHHHHHHHhCCCCCeEEEEECCHHHH-HHHHHhhhhhccccCCCceEEEEChHHHHHhhccCCCCCEE
Confidence 46799999999999999888764 36899999999876 777775432111111123444444532 21 24579999
Q ss_pred EEcccccCCcChH-H--HHHHHHHHHHhcCCCCceEee
Q 026036 152 LASDILLYVKQYS-N--LIKSLSVLLKSYKPKDSQVGH 186 (244)
Q Consensus 152 ~~~~~l~~~~~~~-~--l~~~l~~~~~~lk~gG~~~~~ 186 (244)
++ |.. .+.... . -...++.+.+.|+|||.++..
T Consensus 170 i~-D~~-dp~~~~~~L~t~ef~~~~~~~L~pgGvlv~q 205 (308)
T PLN02366 170 IV-DSS-DPVGPAQELFEKPFFESVARALRPGGVVCTQ 205 (308)
T ss_pred EE-cCC-CCCCchhhhhHHHHHHHHHHhcCCCcEEEEC
Confidence 98 433 221111 1 136788999999999988764
|
|
| >PF05958 tRNA_U5-meth_tr: tRNA (Uracil-5-)-methyltransferase; InterPro: IPR010280 This family consists of (uracil-5-)-methyltransferases 2 | Back alignment and domain information |
|---|
Probab=98.80 E-value=3e-08 Score=84.77 Aligned_cols=85 Identities=18% Similarity=0.281 Sum_probs=59.8
Q ss_pred eEEEEecccCCCCcceeechHHHHHHHHhhccCcccCCeEEEeCCCCcHHHHHHHHhCCCeEEEEeCChHHHHHHHHHhH
Q 026036 42 ELVIREFAFHQLNANFLWPGTFSFAEWLMHHREWIERRRCIELGSGTGALAIFLRKAMNLDITTSDYNDQEIEDNIAYNS 121 (244)
Q Consensus 42 ~~~~~~~~~~~~~~~~~w~~~~~l~~~~~~~~~~~~~~~VLdlG~G~G~~~~~~a~~~~~~v~~~D~~~~~l~~~~~~~~ 121 (244)
.+.+...++++.+.. ....|.+++.+.....++ +|||+-||+|.+++.+|.. ..+|+|+|++++++ +.+++|+
T Consensus 166 ~~~~~~~sFfQvN~~----~~~~l~~~~~~~l~~~~~-~vlDlycG~G~fsl~la~~-~~~V~gvE~~~~av-~~A~~Na 238 (352)
T PF05958_consen 166 SFRISPGSFFQVNPE----QNEKLYEQALEWLDLSKG-DVLDLYCGVGTFSLPLAKK-AKKVIGVEIVEEAV-EDARENA 238 (352)
T ss_dssp EEEEETTS---SBHH----HHHHHHHHHHHHCTT-TT-EEEEES-TTTCCHHHHHCC-SSEEEEEES-HHHH-HHHHHHH
T ss_pred EEEECCCcCccCcHH----HHHHHHHHHHHHhhcCCC-cEEEEeecCCHHHHHHHhh-CCeEEEeeCCHHHH-HHHHHHH
Confidence 344444556555433 677888888777665555 8999999999999999876 67899999999998 8999999
Q ss_pred HhcCCCCCcceEe
Q 026036 122 TTNGITPALPHIK 134 (244)
Q Consensus 122 ~~~~~~~~~~~~~ 134 (244)
..|++. ++..+.
T Consensus 239 ~~N~i~-n~~f~~ 250 (352)
T PF05958_consen 239 KLNGID-NVEFIR 250 (352)
T ss_dssp HHTT---SEEEEE
T ss_pred HHcCCC-cceEEE
Confidence 999984 344443
|
1.1.35 from EC from bacteria, archaea and eukaryotes. A 5-methyluridine (m(5)U) residue at position 54 is a conserved feature of bacterial and eukaryotic tRNAs. The methylation of U54 is catalysed by the tRNA(m5U54)methyltransferase, which in Saccharomyces cerevisiae is encoded by the nonessential TRM2 gene. It is thought that tRNA modification enzymes might have a role in tRNA maturation not necessarily linked to their known catalytic activity []. This protein family also contains the 23SrRNA methyltransferases, first proposed to be RNA methyltransferases by homology to the TrmA family. The member from Escherichia coli has now been shown to act as the 23S RNA methyltransferase for the conserved U1939. The gene is now designated rumA and was previously designated ygcA [].; GO: 0008173 RNA methyltransferase activity, 0006396 RNA processing; PDB: 2VS1_A 2JJQ_A 2BH2_A 1UWV_A 3BT7_B. |
| >COG2520 Predicted methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.80 E-value=9.1e-08 Score=80.37 Aligned_cols=99 Identities=16% Similarity=0.099 Sum_probs=76.4
Q ss_pred ccCCeEEEeCCCCcHHHHHHHHhCCCeEEEEeCChHHHHHHHHHhHHhcCCCCCcceEeeecCCCCCCCCCCccEEEEcc
Q 026036 76 IERRRCIELGSGTGALAIFLRKAMNLDITTSDYNDQEIEDNIAYNSTTNGITPALPHIKHSWGDAFPIPNPDWDLILASD 155 (244)
Q Consensus 76 ~~~~~VLdlG~G~G~~~~~~a~~~~~~v~~~D~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fD~I~~~~ 155 (244)
.+|.+|||.-||.|.+++.+|..+..+|+++|+|+.++ +.+++|+.+|++...+..+..|..+..+. .+.+|-|+++.
T Consensus 187 ~~GE~V~DmFAGVGpfsi~~Ak~g~~~V~A~diNP~A~-~~L~eNi~LN~v~~~v~~i~gD~rev~~~-~~~aDrIim~~ 264 (341)
T COG2520 187 KEGETVLDMFAGVGPFSIPIAKKGRPKVYAIDINPDAV-EYLKENIRLNKVEGRVEPILGDAREVAPE-LGVADRIIMGL 264 (341)
T ss_pred cCCCEEEEccCCcccchhhhhhcCCceEEEEecCHHHH-HHHHHHHHhcCccceeeEEeccHHHhhhc-cccCCEEEeCC
Confidence 36899999999999999999998766799999999998 99999999999977666665554433222 26799999976
Q ss_pred cccCCcChHHHHHHHHHHHHhcCCCCce
Q 026036 156 ILLYVKQYSNLIKSLSVLLKSYKPKDSQ 183 (244)
Q Consensus 156 ~l~~~~~~~~l~~~l~~~~~~lk~gG~~ 183 (244)
+-.. . +.+....+.+++||.+
T Consensus 265 p~~a----~---~fl~~A~~~~k~~g~i 285 (341)
T COG2520 265 PKSA----H---EFLPLALELLKDGGII 285 (341)
T ss_pred CCcc----h---hhHHHHHHHhhcCcEE
Confidence 6411 1 4555567778888843
|
|
| >PF05185 PRMT5: PRMT5 arginine-N-methyltransferase; InterPro: IPR007857 The human homologue of Saccharomyces cerevisiae Skb1 (Shk1 kinase-binding protein 1) is a protein methyltransferase [] | Back alignment and domain information |
|---|
Probab=98.80 E-value=3.8e-08 Score=86.32 Aligned_cols=101 Identities=15% Similarity=0.227 Sum_probs=66.7
Q ss_pred cCCeEEEeCCCCcHHHHHHHHhC-----CCeEEEEeCChHHHHHHHHHhHHhcCCCCCcceEeeecCCCCCCCCCCccEE
Q 026036 77 ERRRCIELGSGTGALAIFLRKAM-----NLDITTSDYNDQEIEDNIAYNSTTNGITPALPHIKHSWGDAFPIPNPDWDLI 151 (244)
Q Consensus 77 ~~~~VLdlG~G~G~~~~~~a~~~-----~~~v~~~D~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fD~I 151 (244)
++..|+|+|||+|.++..+++.+ ..+|++++.++.++ ..+++.+..|+..+++..+..+..+- . ...+.|+|
T Consensus 186 ~~~vVldVGAGrGpL~~~al~A~~~~~~a~~VyAVEkn~~A~-~~l~~~v~~n~w~~~V~vi~~d~r~v-~-lpekvDII 262 (448)
T PF05185_consen 186 KDKVVLDVGAGRGPLSMFALQAGARAGGAVKVYAVEKNPNAV-VTLQKRVNANGWGDKVTVIHGDMREV-E-LPEKVDII 262 (448)
T ss_dssp TT-EEEEES-TTSHHHHHHHHTTHHHCCESEEEEEESSTHHH-HHHHHHHHHTTTTTTEEEEES-TTTS-C-HSS-EEEE
T ss_pred cceEEEEeCCCccHHHHHHHHHHHHhCCCeEEEEEcCCHhHH-HHHHHHHHhcCCCCeEEEEeCcccCC-C-CCCceeEE
Confidence 46789999999999998776654 46899999999875 55556667788877776665444332 1 13489999
Q ss_pred EEccc--ccCCcChHHHHHHHHHHHHhcCCCCce
Q 026036 152 LASDI--LLYVKQYSNLIKSLSVLLKSYKPKDSQ 183 (244)
Q Consensus 152 ~~~~~--l~~~~~~~~l~~~l~~~~~~lk~gG~~ 183 (244)
|+--. +-..+..+ ..+....+.|||+|..
T Consensus 263 VSElLGsfg~nEl~p---E~Lda~~rfLkp~Gi~ 293 (448)
T PF05185_consen 263 VSELLGSFGDNELSP---ECLDAADRFLKPDGIM 293 (448)
T ss_dssp EE---BTTBTTTSHH---HHHHHGGGGEEEEEEE
T ss_pred EEeccCCccccccCH---HHHHHHHhhcCCCCEE
Confidence 98322 21222333 6677888999999853
|
These proteins seem to play a role in Jak signalling.; GO: 0008168 methyltransferase activity, 0005737 cytoplasm; PDB: 2Y1W_C 2Y1X_D 2V7E_B 2V74_H 3R0Q_G 3B3F_B 3B3J_A 3B3G_A 3UA3_A 3UA4_B .... |
| >PF02527 GidB: rRNA small subunit methyltransferase G; InterPro: IPR003682 This entry represents a rRNA small subunit methyltransferase G | Back alignment and domain information |
|---|
Probab=98.79 E-value=6.7e-08 Score=74.80 Aligned_cols=124 Identities=19% Similarity=0.222 Sum_probs=80.9
Q ss_pred eEEEeCCCCcHHHHHHHHhC-CCeEEEEeCChHHHHHHHHHhHHhcCCCCCcceEeeecCCCCCCCCCCccEEEEccccc
Q 026036 80 RCIELGSGTGALAIFLRKAM-NLDITTSDYNDQEIEDNIAYNSTTNGITPALPHIKHSWGDAFPIPNPDWDLILASDILL 158 (244)
Q Consensus 80 ~VLdlG~G~G~~~~~~a~~~-~~~v~~~D~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fD~I~~~~~l~ 158 (244)
+++|+|+|.|.+|+.+|-.. ..+++.+|....-+ ..++.-+...+++ ++..+..+..+ .....+||+|++-.+-
T Consensus 51 ~~lDiGSGaGfPGipLaI~~p~~~~~LvEs~~KK~-~FL~~~~~~L~L~-nv~v~~~R~E~--~~~~~~fd~v~aRAv~- 125 (184)
T PF02527_consen 51 KVLDIGSGAGFPGIPLAIARPDLQVTLVESVGKKV-AFLKEVVRELGLS-NVEVINGRAEE--PEYRESFDVVTARAVA- 125 (184)
T ss_dssp EEEEETSTTTTTHHHHHHH-TTSEEEEEESSHHHH-HHHHHHHHHHT-S-SEEEEES-HHH--TTTTT-EEEEEEESSS-
T ss_pred eEEecCCCCCChhHHHHHhCCCCcEEEEeCCchHH-HHHHHHHHHhCCC-CEEEEEeeecc--cccCCCccEEEeehhc-
Confidence 89999999999999998776 67899999998765 5555555555553 23444433333 3345689999996553
Q ss_pred CCcChHHHHHHHHHHHHhcCCCCceEeecccccCCCCCCCCCCCeEEEeeeeccCccchhhHHHHHhhcCCeEEEecc
Q 026036 159 YVKQYSNLIKSLSVLLKSYKPKDSQVGHLTKNEQGEGTEGLPWPAFLMSWRRRIGKEDETIFFTSCENAGLEVKHLGS 236 (244)
Q Consensus 159 ~~~~~~~l~~~l~~~~~~lk~gG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gf~v~~~~~ 236 (244)
.+...+.-+.+.+++||++++. +-....+........++..|.+++.+.+
T Consensus 126 ------~l~~l~~~~~~~l~~~G~~l~~----------------------KG~~~~~El~~~~~~~~~~~~~~~~v~~ 175 (184)
T PF02527_consen 126 ------PLDKLLELARPLLKPGGRLLAY----------------------KGPDAEEELEEAKKAWKKLGLKVLSVPE 175 (184)
T ss_dssp ------SHHHHHHHHGGGEEEEEEEEEE----------------------ESS--HHHHHTHHHHHHCCCEEEEEEEE
T ss_pred ------CHHHHHHHHHHhcCCCCEEEEE----------------------cCCChHHHHHHHHhHHHHhCCEEeeecc
Confidence 3447777888999999976653 2111111124455667777888777754
|
Previously identified as a glucose-inhibited division protein B that appears to be present and in a single copy in all complete eubacterial genomes so far sequenced. Specifically methylates the N7 position of a guanosine in 16S rRNA [, , ].; GO: 0008649 rRNA methyltransferase activity, 0006364 rRNA processing, 0005737 cytoplasm; PDB: 1XDZ_A 3G88_A 3G8A_B 3G89_B 3G8B_B 1JSX_A. |
| >PF05148 Methyltransf_8: Hypothetical methyltransferase; InterPro: IPR007823 This family consists of uncharacterised eukaryotic proteins which are related to S-adenosyl-L-methionine-dependent methyltransferases | Back alignment and domain information |
|---|
Probab=98.79 E-value=2.5e-08 Score=77.40 Aligned_cols=129 Identities=16% Similarity=0.193 Sum_probs=77.5
Q ss_pred eechH--HHHHHHHhhccCcccCCeEEEeCCCCcHHHHHHHHhCCCeEEEEeCChHHHHHHHHHhHHhcCCCCCcceEee
Q 026036 58 LWPGT--FSFAEWLMHHREWIERRRCIELGSGTGALAIFLRKAMNLDITTSDYNDQEIEDNIAYNSTTNGITPALPHIKH 135 (244)
Q Consensus 58 ~w~~~--~~l~~~~~~~~~~~~~~~VLdlG~G~G~~~~~~a~~~~~~v~~~D~~~~~l~~~~~~~~~~~~~~~~~~~~~~ 135 (244)
-||.. ..+.+|+...+ ++..|-|+|||.+.++..+. ...+|...|+-.. |.. .+..
T Consensus 54 ~WP~nPvd~iI~~l~~~~---~~~viaD~GCGdA~la~~~~--~~~~V~SfDLva~------------n~~-----Vtac 111 (219)
T PF05148_consen 54 KWPVNPVDVIIEWLKKRP---KSLVIADFGCGDAKLAKAVP--NKHKVHSFDLVAP------------NPR-----VTAC 111 (219)
T ss_dssp TSSS-HHHHHHHHHCTS----TTS-EEEES-TT-HHHHH----S---EEEEESS-S------------STT-----EEES
T ss_pred cCCCCcHHHHHHHHHhcC---CCEEEEECCCchHHHHHhcc--cCceEEEeeccCC------------CCC-----EEEe
Confidence 45543 45667776433 45799999999999886552 2457999997542 111 2223
Q ss_pred ecCCCCCCCCCCccEEEEcccccCCcChHHHHHHHHHHHHhcCCCCceEeecccccCCCCCCCCCCCeEEEeeeeccCcc
Q 026036 136 SWGDAFPIPNPDWDLILASDILLYVKQYSNLIKSLSVLLKSYKPKDSQVGHLTKNEQGEGTEGLPWPAFLMSWRRRIGKE 215 (244)
Q Consensus 136 ~~~~~~~~~~~~fD~I~~~~~l~~~~~~~~l~~~l~~~~~~lk~gG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 215 (244)
+. ..+|..+++.|++|+.-.+ .. .++...++++.|+|||||.+.|. .-+.|+.
T Consensus 112 di-a~vPL~~~svDv~VfcLSL-MG---Tn~~~fi~EA~RvLK~~G~L~IA--------------------EV~SRf~-- 164 (219)
T PF05148_consen 112 DI-ANVPLEDESVDVAVFCLSL-MG---TNWPDFIREANRVLKPGGILKIA--------------------EVKSRFE-- 164 (219)
T ss_dssp -T-TS-S--TT-EEEEEEES----S---S-HHHHHHHHHHHEEEEEEEEEE--------------------EEGGG-S--
T ss_pred cC-ccCcCCCCceeEEEEEhhh-hC---CCcHHHHHHHHheeccCcEEEEE--------------------EecccCc--
Confidence 33 3456778899999987776 32 45669999999999999987765 2444554
Q ss_pred chhhHHHHHhhcCCeEEEec
Q 026036 216 DETIFFTSCENAGLEVKHLG 235 (244)
Q Consensus 216 ~~~~~~~~l~~~Gf~v~~~~ 235 (244)
+.+.|.+.++..||+++...
T Consensus 165 ~~~~F~~~~~~~GF~~~~~d 184 (219)
T PF05148_consen 165 NVKQFIKALKKLGFKLKSKD 184 (219)
T ss_dssp -HHHHHHHHHCTTEEEEEEE
T ss_pred CHHHHHHHHHHCCCeEEecc
Confidence 37899999999999988753
|
; GO: 0008168 methyltransferase activity; PDB: 2ZFU_B. |
| >PRK01581 speE spermidine synthase; Validated | Back alignment and domain information |
|---|
Probab=98.78 E-value=4.1e-08 Score=82.92 Aligned_cols=107 Identities=16% Similarity=0.110 Sum_probs=67.6
Q ss_pred cCCeEEEeCCCCcHHHHHHHHhC-CCeEEEEeCChHHHHHHHHHhHH---hcCCCCCcceEeeecCCCC---CCCCCCcc
Q 026036 77 ERRRCIELGSGTGALAIFLRKAM-NLDITTSDYNDQEIEDNIAYNST---TNGITPALPHIKHSWGDAF---PIPNPDWD 149 (244)
Q Consensus 77 ~~~~VLdlG~G~G~~~~~~a~~~-~~~v~~~D~~~~~l~~~~~~~~~---~~~~~~~~~~~~~~~~~~~---~~~~~~fD 149 (244)
...+||+||||+|.....+++.. ..+|+++|++++++ +.++..-. .+.....-+.+.+..+|.. ....++||
T Consensus 150 ~PkrVLIIGgGdG~tlrelLk~~~v~~It~VEIDpeVI-elAr~~~~L~~~~~~~~~DpRV~vvi~Da~~fL~~~~~~YD 228 (374)
T PRK01581 150 DPKRVLILGGGDGLALREVLKYETVLHVDLVDLDGSMI-NMARNVPELVSLNKSAFFDNRVNVHVCDAKEFLSSPSSLYD 228 (374)
T ss_pred CCCEEEEECCCHHHHHHHHHhcCCCCeEEEEeCCHHHH-HHHHhccccchhccccCCCCceEEEECcHHHHHHhcCCCcc
Confidence 45699999999999887777654 47899999999987 77764211 1111101123333333332 23346899
Q ss_pred EEEEcccccCCcC--hHH--HHHHHHHHHHhcCCCCceEee
Q 026036 150 LILASDILLYVKQ--YSN--LIKSLSVLLKSYKPKDSQVGH 186 (244)
Q Consensus 150 ~I~~~~~l~~~~~--~~~--l~~~l~~~~~~lk~gG~~~~~ 186 (244)
+|++. .. .... ... -...++.+.+.|+|||.+++.
T Consensus 229 VIIvD-l~-DP~~~~~~~LyT~EFy~~~~~~LkPgGV~V~Q 267 (374)
T PRK01581 229 VIIID-FP-DPATELLSTLYTSELFARIATFLTEDGAFVCQ 267 (374)
T ss_pred EEEEc-CC-CccccchhhhhHHHHHHHHHHhcCCCcEEEEe
Confidence 99984 32 2111 111 136788999999999987665
|
|
| >PRK10611 chemotaxis methyltransferase CheR; Provisional | Back alignment and domain information |
|---|
Probab=98.78 E-value=3.2e-08 Score=81.72 Aligned_cols=107 Identities=12% Similarity=0.174 Sum_probs=68.8
Q ss_pred CCeEEEeCCCCc----HHHHHHHHhC-----CCeEEEEeCChHHHHHHHHHhHH----hcCCC-----------------
Q 026036 78 RRRCIELGSGTG----ALAIFLRKAM-----NLDITTSDYNDQEIEDNIAYNST----TNGIT----------------- 127 (244)
Q Consensus 78 ~~~VLdlG~G~G----~~~~~~a~~~-----~~~v~~~D~~~~~l~~~~~~~~~----~~~~~----------------- 127 (244)
.-||+-.||.|| .+++.+.... ..+|+|+|+|+.++ +.++.-.- ..+++
T Consensus 116 ~irIWSAgCStGEEpYSlAmll~e~~~~~~~~~~I~atDIs~~aL-~~Ar~G~Y~~~~~r~~p~~~~~ryF~~~~~~~~~ 194 (287)
T PRK10611 116 EYRVWSAAASTGEEPYSIAMTLADTLGTAPGRWKVFASDIDTEVL-EKARSGIYRQEELKTLSPQQLQRYFMRGTGPHEG 194 (287)
T ss_pred CEEEEEccccCCHHHHHHHHHHHHhhcccCCCcEEEEEECCHHHH-HHHHhCCCCHHHHhcCCHHHHHHHcccccCCCCc
Confidence 369999999999 3344444432 35799999999987 55543210 00010
Q ss_pred -----CCc-ceEeeecCCCCC--C-CCCCccEEEEcccccCCcChHHHHHHHHHHHHhcCCCCceEee
Q 026036 128 -----PAL-PHIKHSWGDAFP--I-PNPDWDLILASDILLYVKQYSNLIKSLSVLLKSYKPKDSQVGH 186 (244)
Q Consensus 128 -----~~~-~~~~~~~~~~~~--~-~~~~fD~I~~~~~l~~~~~~~~l~~~l~~~~~~lk~gG~~~~~ 186 (244)
..+ ..+.+...|... + ..+.||+|+|.+++ .+.+.+...++++.+++.|+|||.+++.
T Consensus 195 ~~~v~~~lr~~V~F~~~NL~~~~~~~~~~fD~I~cRNvl-iyF~~~~~~~vl~~l~~~L~pgG~L~lG 261 (287)
T PRK10611 195 LVRVRQELANYVDFQQLNLLAKQWAVPGPFDAIFCRNVM-IYFDKTTQERILRRFVPLLKPDGLLFAG 261 (287)
T ss_pred eEEEChHHHccCEEEcccCCCCCCccCCCcceeeHhhHH-hcCCHHHHHHHHHHHHHHhCCCcEEEEe
Confidence 000 122333333332 1 24689999999998 4445566779999999999999988776
|
|
| >TIGR00308 TRM1 tRNA(guanine-26,N2-N2) methyltransferase | Back alignment and domain information |
|---|
Probab=98.73 E-value=9.4e-08 Score=81.99 Aligned_cols=100 Identities=12% Similarity=0.089 Sum_probs=73.1
Q ss_pred CCeEEEeCCCCcHHHHHHHHh--CCCeEEEEeCChHHHHHHHHHhHHhcCCCCCcceEeeecCCCCCCCCCCccEEEEcc
Q 026036 78 RRRCIELGSGTGALAIFLRKA--MNLDITTSDYNDQEIEDNIAYNSTTNGITPALPHIKHSWGDAFPIPNPDWDLILASD 155 (244)
Q Consensus 78 ~~~VLdlG~G~G~~~~~~a~~--~~~~v~~~D~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fD~I~~~~ 155 (244)
+.+|||+.||+|..++.++.. +..+|+++|+++.++ +.+++|+..|++. .+..+..+....+.....+||+|.. |
T Consensus 45 ~~~vLD~faGsG~rgir~a~e~~ga~~Vv~nD~n~~Av-~~i~~N~~~N~~~-~~~v~~~Da~~~l~~~~~~fDvIdl-D 121 (374)
T TIGR00308 45 YINIADALSASGIRAIRYAHEIEGVREVFANDINPKAV-ESIKNNVEYNSVE-NIEVPNEDAANVLRYRNRKFHVIDI-D 121 (374)
T ss_pred CCEEEECCCchhHHHHHHHhhCCCCCEEEEEeCCHHHH-HHHHHHHHHhCCC-cEEEEchhHHHHHHHhCCCCCEEEe-C
Confidence 358999999999999999887 357899999999987 8999999998773 2222222222222222357999987 6
Q ss_pred cccCCcChHHHHHHHHHHHHhcCCCCceEee
Q 026036 156 ILLYVKQYSNLIKSLSVLLKSYKPKDSQVGH 186 (244)
Q Consensus 156 ~l~~~~~~~~l~~~l~~~~~~lk~gG~~~~~ 186 (244)
++ .. .. ..+..+.+.+++||.++++
T Consensus 122 Pf-Gs--~~---~fld~al~~~~~~glL~vT 146 (374)
T TIGR00308 122 PF-GT--PA---PFVDSAIQASAERGLLLVT 146 (374)
T ss_pred CC-CC--cH---HHHHHHHHhcccCCEEEEE
Confidence 64 32 12 5777788889999998888
|
This enzyme is responsible for two methylations of a characteristic guanine of most tRNA molecules. The activity has been demonstrated for eukaryotic and archaeal proteins, which are active when expressed in E. coli, a species that lacks this enzyme. At least one Eubacterium, Aquifex aeolicus, has an ortholog, as do all completed archaeal genomes. |
| >KOG2940 consensus Predicted methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.69 E-value=6.6e-08 Score=75.66 Aligned_cols=154 Identities=13% Similarity=0.050 Sum_probs=97.9
Q ss_pred CCeEEEeCCCCcHHHHHHHHhCCCeEEEEeCChHHHHHHHHHhHHhcCCCCCcceEeee-cCCCCCCCCCCccEEEEccc
Q 026036 78 RRRCIELGSGTGALAIFLRKAMNLDITTSDYNDQEIEDNIAYNSTTNGITPALPHIKHS-WGDAFPIPNPDWDLILASDI 156 (244)
Q Consensus 78 ~~~VLdlG~G~G~~~~~~a~~~~~~v~~~D~~~~~l~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~fD~I~~~~~ 156 (244)
...++|||||.|.+..++...+-.+++.+|.|..|+ +.++.. ..+++ ....+. -.+.+++.++++|+|+++-.
T Consensus 73 fp~a~diGcs~G~v~rhl~~e~vekli~~DtS~~M~-~s~~~~-qdp~i----~~~~~v~DEE~Ldf~ens~DLiisSls 146 (325)
T KOG2940|consen 73 FPTAFDIGCSLGAVKRHLRGEGVEKLIMMDTSYDMI-KSCRDA-QDPSI----ETSYFVGDEEFLDFKENSVDLIISSLS 146 (325)
T ss_pred CcceeecccchhhhhHHHHhcchhheeeeecchHHH-HHhhcc-CCCce----EEEEEecchhcccccccchhhhhhhhh
Confidence 458999999999999999877777899999999997 555433 22333 222222 22456788889999999999
Q ss_pred ccCCcChHHHHHHHHHHHHhcCCCCceEeecccccCCC---CCCCCCCCeE---EEeeeeccCccchhhHHHHHhhcCCe
Q 026036 157 LLYVKQYSNLIKSLSVLLKSYKPKDSQVGHLTKNEQGE---GTEGLPWPAF---LMSWRRRIGKEDETIFFTSCENAGLE 230 (244)
Q Consensus 157 l~~~~~~~~l~~~l~~~~~~lk~gG~~~~~~~~~~~~~---~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~l~~~Gf~ 230 (244)
+++..+ +...+..++..|||.|.|+-+..+.+... ......+-.- +.+|-..+.. ..+.-.++.++||.
T Consensus 147 lHW~Nd---LPg~m~~ck~~lKPDg~FiasmlggdTLyELR~slqLAelER~GGiSphiSPf~q--vrDiG~LL~rAGF~ 221 (325)
T KOG2940|consen 147 LHWTND---LPGSMIQCKLALKPDGLFIASMLGGDTLYELRCSLQLAELEREGGISPHISPFTQ--VRDIGNLLTRAGFS 221 (325)
T ss_pred hhhhcc---CchHHHHHHHhcCCCccchhHHhccccHHHHHHHhhHHHHHhccCCCCCcChhhh--hhhhhhHHhhcCcc
Confidence 944444 44888999999999998776622221110 0000000000 0112112222 35666789999999
Q ss_pred EEEeccEEEEEe
Q 026036 231 VKHLGSRVYCIK 242 (244)
Q Consensus 231 v~~~~~~~~~~~ 242 (244)
...+..-.+.|+
T Consensus 222 m~tvDtDEi~v~ 233 (325)
T KOG2940|consen 222 MLTVDTDEIVVG 233 (325)
T ss_pred cceecccceeec
Confidence 888876666554
|
|
| >PF01739 CheR: CheR methyltransferase, SAM binding domain; InterPro: IPR022642 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals | Back alignment and domain information |
|---|
Probab=98.66 E-value=5.3e-08 Score=76.18 Aligned_cols=108 Identities=19% Similarity=0.285 Sum_probs=61.2
Q ss_pred cCCeEEEeCCCCc----HHHHHHHHhC------CCeEEEEeCChHHHHHHHHHhH----HhcCCCC--------------
Q 026036 77 ERRRCIELGSGTG----ALAIFLRKAM------NLDITTSDYNDQEIEDNIAYNS----TTNGITP-------------- 128 (244)
Q Consensus 77 ~~~~VLdlG~G~G----~~~~~~a~~~------~~~v~~~D~~~~~l~~~~~~~~----~~~~~~~-------------- 128 (244)
+..+|+-.||+|| .+++.+.... ..+|+|||+|+.++ +.+++-. ...+++.
T Consensus 31 ~~lrIWSagCStGeE~YSlAmll~e~~~~~~~~~~~I~atDi~~~~L-~~Ar~G~Y~~~~~~~~~~~~~~ryf~~~~~~~ 109 (196)
T PF01739_consen 31 RPLRIWSAGCSTGEEPYSLAMLLLELLPGALGWDFRILATDISPSAL-EKARAGIYPERSLRGLPPAYLRRYFTERDGGG 109 (196)
T ss_dssp S-EEEEETT-TTTHHHHHHHHHHHHHH-S-TT-SEEEEEEES-HHHH-HHHHHTEEEGGGGTTS-HHHHHHHEEEE-CCC
T ss_pred CCeEEEECCCCCChhHHHHHHHHHHHhcccCCCceEEEEEECCHHHH-HHHHhCCCCHHHHhhhHHHHHHHhccccCCCc
Confidence 4569999999999 3444444411 35899999999987 5554211 0011110
Q ss_pred -C-----cceEeeecCCCCC--CCCCCccEEEEcccccCCcChHHHHHHHHHHHHhcCCCCceEee
Q 026036 129 -A-----LPHIKHSWGDAFP--IPNPDWDLILASDILLYVKQYSNLIKSLSVLLKSYKPKDSQVGH 186 (244)
Q Consensus 129 -~-----~~~~~~~~~~~~~--~~~~~fD~I~~~~~l~~~~~~~~l~~~l~~~~~~lk~gG~~~~~ 186 (244)
. -..+.+...+.+. ...+.||+|+|.+|+ .....+...++++.+++.|+|||.+++.
T Consensus 110 ~~v~~~lr~~V~F~~~NL~~~~~~~~~fD~I~CRNVl-IYF~~~~~~~vl~~l~~~L~pgG~L~lG 174 (196)
T PF01739_consen 110 YRVKPELRKMVRFRRHNLLDPDPPFGRFDLIFCRNVL-IYFDPETQQRVLRRLHRSLKPGGYLFLG 174 (196)
T ss_dssp TTE-HHHHTTEEEEE--TT-S------EEEEEE-SSG-GGS-HHHHHHHHHHHGGGEEEEEEEEE-
T ss_pred eeEChHHcCceEEEecccCCCCcccCCccEEEecCEE-EEeCHHHHHHHHHHHHHHcCCCCEEEEe
Confidence 0 0122333333333 234589999999998 3344556679999999999999988887
|
The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. Flagellated bacteria swim towards favourable chemicals and away from deleterious ones. Sensing of chemoeffector gradients involves chemotaxis receptors, transmembrane (TM) proteins that detect stimuli through their periplasmic domains and transduce the signals via their cytoplasmic domains []. Signalling outputs from these receptors are influenced both by the binding of the chemoeffector ligand to their periplasmic domains and by methylation of specific glutamate residues on their cytoplasmic domains. Methylation is catalysed by CheR, an S-adenosylmethionine-dependent methyltransferase [], which reversibly methylates specific glutamate residues within a coiled coil region, to form gamma-glutamyl methyl ester residues [, ]. The structure of the Salmonella typhimurium chemotaxis receptor methyltransferase CheR, bound to S-adenosylhomocysteine, has been determined to a resolution of 2.0 A []. The structure reveals CheR to be a two-domain protein, with a smaller N-terminal helical domain linked via a single polypeptide connection to a larger C-terminal alpha/beta domain. The C-terminal domain has the characteristics of a nucleotide-binding fold, with an insertion of a small anti-parallel beta-sheet subdomain. The S-adenosylhomocysteine-binding site is formed mainly by the large domain, with contributions from residues within the N-terminal domain and the linker region []. CheR proteins are part of the chemotaxis signaling mechanism which methylates the chemotaxis receptor at specific glutamate residues. This entry refers to the C-terminal SAM-binding domain of the CherR-type MCP methyltransferases, which are found in bacteria, archaea and green plants. This entry is found in association with PF03705 from PFAM. ; PDB: 1AF7_A 1BC5_A. |
| >KOG2187 consensus tRNA uracil-5-methyltransferase and related tRNA-modifying enzymes [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=98.65 E-value=2.1e-07 Score=80.88 Aligned_cols=139 Identities=16% Similarity=0.154 Sum_probs=94.4
Q ss_pred ccCCceEEEEecccCCCCcceeechHHHHHHHHhhccCcccCCeEEEeCCCCcHHHHHHHHhCCCeEEEEeCChHHHHHH
Q 026036 37 QFPEMELVIREFAFHQLNANFLWPGTFSFAEWLMHHREWIERRRCIELGSGTGALAIFLRKAMNLDITTSDYNDQEIEDN 116 (244)
Q Consensus 37 ~~~~~~~~~~~~~~~~~~~~~~w~~~~~l~~~~~~~~~~~~~~~VLdlG~G~G~~~~~~a~~~~~~v~~~D~~~~~l~~~ 116 (244)
.+.+..+.+....+++.+.. +++.|..++.++.....++.+||+.||||.+++++|+. ..+|+|++++++++ +.
T Consensus 347 ~l~~ltF~iSp~AFFQ~Nt~----~aevLys~i~e~~~l~~~k~llDv~CGTG~iglala~~-~~~ViGvEi~~~aV-~d 420 (534)
T KOG2187|consen 347 SLLGLTFRISPGAFFQTNTS----AAEVLYSTIGEWAGLPADKTLLDVCCGTGTIGLALARG-VKRVIGVEISPDAV-ED 420 (534)
T ss_pred ecCCeEEEECCchhhccCcH----HHHHHHHHHHHHhCCCCCcEEEEEeecCCceehhhhcc-ccceeeeecChhhc-ch
Confidence 45567777777777777644 78899999998888888899999999999999999865 78899999999998 88
Q ss_pred HHHhHHhcCCCCCcceEeeecCCCCCCC-C---CCccEEEEcccccCCcChHHHHHHHHHHHHhcCCCCceEee
Q 026036 117 IAYNSTTNGITPALPHIKHSWGDAFPIP-N---PDWDLILASDILLYVKQYSNLIKSLSVLLKSYKPKDSQVGH 186 (244)
Q Consensus 117 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~---~~fD~I~~~~~l~~~~~~~~l~~~l~~~~~~lk~gG~~~~~ 186 (244)
+++|+..|+++ ++.++.....+..+.. . ++-++|...|+- ...-+. +.++.+.+.-++--.++++
T Consensus 421 A~~nA~~Ngis-Na~Fi~gqaE~~~~sl~~~~~~~~~~v~iiDPp-R~Glh~---~~ik~l~~~~~~~rlvyvS 489 (534)
T KOG2187|consen 421 AEKNAQINGIS-NATFIVGQAEDLFPSLLTPCCDSETLVAIIDPP-RKGLHM---KVIKALRAYKNPRRLVYVS 489 (534)
T ss_pred hhhcchhcCcc-ceeeeecchhhccchhcccCCCCCceEEEECCC-cccccH---HHHHHHHhccCccceEEEE
Confidence 99999999994 2333333222332211 1 234556666664 222223 4555555443344333433
|
|
| >TIGR00755 ksgA dimethyladenosine transferase | Back alignment and domain information |
|---|
Probab=98.64 E-value=5e-07 Score=73.91 Aligned_cols=87 Identities=20% Similarity=0.210 Sum_probs=57.5
Q ss_pred HHHHHHHhhccCcccCCeEEEeCCCCcHHHHHHHHhCCCeEEEEeCChHHHHHHHHHhHHhcCCCCCcceEeeecCCCCC
Q 026036 63 FSFAEWLMHHREWIERRRCIELGSGTGALAIFLRKAMNLDITTSDYNDQEIEDNIAYNSTTNGITPALPHIKHSWGDAFP 142 (244)
Q Consensus 63 ~~l~~~~~~~~~~~~~~~VLdlG~G~G~~~~~~a~~~~~~v~~~D~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 142 (244)
..+.+.+.+.....++.+|||+|||+|.++..+++.. .+|+++|+++.++ +.++.+... ..++ .+..+|...
T Consensus 15 ~~i~~~i~~~~~~~~~~~VLEiG~G~G~lt~~L~~~~-~~v~~iE~d~~~~-~~l~~~~~~---~~~v---~v~~~D~~~ 86 (253)
T TIGR00755 15 ESVIQKIVEAANVLEGDVVLEIGPGLGALTEPLLKRA-KKVTAIEIDPRLA-EILRKLLSL---YERL---EVIEGDALK 86 (253)
T ss_pred HHHHHHHHHhcCCCCcCEEEEeCCCCCHHHHHHHHhC-CcEEEEECCHHHH-HHHHHHhCc---CCcE---EEEECchhc
Confidence 3445555555556678899999999999999998874 6799999999987 666655432 1122 333333333
Q ss_pred CCCCCcc---EEEEcccc
Q 026036 143 IPNPDWD---LILASDIL 157 (244)
Q Consensus 143 ~~~~~fD---~I~~~~~l 157 (244)
.....+| +|+++-++
T Consensus 87 ~~~~~~d~~~~vvsNlPy 104 (253)
T TIGR00755 87 VDLPDFPKQLKVVSNLPY 104 (253)
T ss_pred CChhHcCCcceEEEcCCh
Confidence 2223466 78877664
|
Alternate name: S-adenosylmethionine--6-N',N'-adenosyl (rRNA) dimethyltransferase |
| >KOG3987 consensus Uncharacterized conserved protein DREV/CGI-81 [Function unknown] | Back alignment and domain information |
|---|
Probab=98.64 E-value=6e-09 Score=80.12 Aligned_cols=164 Identities=18% Similarity=0.194 Sum_probs=98.8
Q ss_pred cceeechHHHHHHHHhhccCcc--cCCeEEEeCCCCcHHHHHHHHhCCCeEEEEeCChHHHHHHHHHhHHhcCCCCCcce
Q 026036 55 ANFLWPGTFSFAEWLMHHREWI--ERRRCIELGSGTGALAIFLRKAMNLDITTSDYNDQEIEDNIAYNSTTNGITPALPH 132 (244)
Q Consensus 55 ~~~~w~~~~~l~~~~~~~~~~~--~~~~VLdlG~G~G~~~~~~a~~~~~~v~~~D~~~~~l~~~~~~~~~~~~~~~~~~~ 132 (244)
|.++--+...+.+++....+.. ...++||||+|.|-++..++.. -.+|+++++|..|. ..+++. .-|-+
T Consensus 88 GsMFifSe~QF~klL~i~~p~w~~~~~~lLDlGAGdGeit~~m~p~-feevyATElS~tMr-~rL~kk-~ynVl------ 158 (288)
T KOG3987|consen 88 GSMFIFSEEQFRKLLVIGGPAWGQEPVTLLDLGAGDGEITLRMAPT-FEEVYATELSWTMR-DRLKKK-NYNVL------ 158 (288)
T ss_pred CceEEecHHHHHHHHhcCCCccCCCCeeEEeccCCCcchhhhhcch-HHHHHHHHhhHHHH-HHHhhc-CCcee------
Confidence 4444455666777665542222 3479999999999999888654 45699999999885 444321 11111
Q ss_pred EeeecCCCCCCCCCCccEEEEcccccCCcChHHHHHHHHHHHHhcCC-CCceEeecc-----cccCCCCCCCCCCCeEEE
Q 026036 133 IKHSWGDAFPIPNPDWDLILASDILLYVKQYSNLIKSLSVLLKSYKP-KDSQVGHLT-----KNEQGEGTEGLPWPAFLM 206 (244)
Q Consensus 133 ~~~~~~~~~~~~~~~fD~I~~~~~l~~~~~~~~l~~~l~~~~~~lk~-gG~~~~~~~-----~~~~~~~~~~~~~~~~~~ 206 (244)
-..+|.+ .+-+||+|.|.+.+ .- ..+..+.++.++.++.| +|++++... ..+.+...... .|.-++
T Consensus 159 ~~~ew~~----t~~k~dli~clNlL-DR--c~~p~kLL~Di~~vl~psngrvivaLVLP~~hYVE~N~~g~~~-rPdn~L 230 (288)
T KOG3987|consen 159 TEIEWLQ----TDVKLDLILCLNLL-DR--CFDPFKLLEDIHLVLAPSNGRVIVALVLPYMHYVETNTSGLPL-RPDNLL 230 (288)
T ss_pred eehhhhh----cCceeehHHHHHHH-Hh--hcChHHHHHHHHHHhccCCCcEEEEEEecccceeecCCCCCcC-CchHHH
Confidence 1233432 13479999999988 32 23445889999999999 999887711 11112211111 111111
Q ss_pred eeeeccCccchhhHHHHHhhcCCeEEEec
Q 026036 207 SWRRRIGKEDETIFFTSCENAGLEVKHLG 235 (244)
Q Consensus 207 ~~~~~~~~~~~~~~~~~l~~~Gf~v~~~~ 235 (244)
....+...+....|.++++.+||.++...
T Consensus 231 e~~Gr~~ee~v~~~~e~lr~~g~~veawT 259 (288)
T KOG3987|consen 231 ENNGRSFEEEVARFMELLRNCGYRVEAWT 259 (288)
T ss_pred HhcCccHHHHHHHHHHHHHhcCchhhhhh
Confidence 12222222234678889999999988543
|
|
| >PF11968 DUF3321: Putative methyltransferase (DUF3321); InterPro: IPR021867 This family is conserved in fungi and is annotated as being a nucleolar protein | Back alignment and domain information |
|---|
Probab=98.64 E-value=6.6e-07 Score=69.92 Aligned_cols=139 Identities=21% Similarity=0.177 Sum_probs=93.7
Q ss_pred hHHHHHHHHhhccCccc----CCeEEEeCCCCcHHHHHHHHhCCCeEEEEeCChHHHHHHHHHhHHhcCCCCCcceEeee
Q 026036 61 GTFSFAEWLMHHREWIE----RRRCIELGSGTGALAIFLRKAMNLDITTSDYNDQEIEDNIAYNSTTNGITPALPHIKHS 136 (244)
Q Consensus 61 ~~~~l~~~~~~~~~~~~----~~~VLdlG~G~G~~~~~~a~~~~~~v~~~D~~~~~l~~~~~~~~~~~~~~~~~~~~~~~ 136 (244)
++..+.+|+.......+ ..++|||||=+....... ..--.|+.+|+++.. . ++ .+.|
T Consensus 31 SSK~lv~wL~~~~~~~~~~~~~lrlLEVGals~~N~~s~--~~~fdvt~IDLns~~--~---------~I------~qqD 91 (219)
T PF11968_consen 31 SSKWLVEWLKELGVRPKNGRPKLRLLEVGALSTDNACST--SGWFDVTRIDLNSQH--P---------GI------LQQD 91 (219)
T ss_pred hhHHHHHHhhhhccccccccccceEEeecccCCCCcccc--cCceeeEEeecCCCC--C---------Cc------eeec
Confidence 88999999987643222 359999998655433222 234459999998732 1 11 1111
Q ss_pred cCC-CCC-CCCCCccEEEEcccccCCcChHHHHHHHHHHHHhcCCCCc-----eEeecccccCCCCCCCCCCCeEEEeee
Q 026036 137 WGD-AFP-IPNPDWDLILASDILLYVKQYSNLIKSLSVLLKSYKPKDS-----QVGHLTKNEQGEGTEGLPWPAFLMSWR 209 (244)
Q Consensus 137 ~~~-~~~-~~~~~fD~I~~~~~l~~~~~~~~l~~~l~~~~~~lk~gG~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~ 209 (244)
.-+ ++| ...++||+|.++-|+-+.....+..++++.+++.|+|+|. ++++.+...- ..
T Consensus 92 Fm~rplp~~~~e~FdvIs~SLVLNfVP~p~~RG~Ml~r~~~fL~~~g~~~~~~LFlVlP~~Cv---------------~N 156 (219)
T PF11968_consen 92 FMERPLPKNESEKFDVISLSLVLNFVPDPKQRGEMLRRAHKFLKPPGLSLFPSLFLVLPLPCV---------------TN 156 (219)
T ss_pred cccCCCCCCcccceeEEEEEEEEeeCCCHHHHHHHHHHHHHHhCCCCccCcceEEEEeCchHh---------------hc
Confidence 111 222 2346899999999997777788888999999999999999 8777444321 12
Q ss_pred eccCccchhhHHHHHhhcCCeEEEec
Q 026036 210 RRIGKEDETIFFTSCENAGLEVKHLG 235 (244)
Q Consensus 210 ~~~~~~~~~~~~~~l~~~Gf~v~~~~ 235 (244)
.|+.. .+.|.++|+..||+..+..
T Consensus 157 SRy~~--~~~l~~im~~LGf~~~~~~ 180 (219)
T PF11968_consen 157 SRYMT--EERLREIMESLGFTRVKYK 180 (219)
T ss_pred ccccC--HHHHHHHHHhCCcEEEEEE
Confidence 23322 5789999999999877654
|
|
| >COG1352 CheR Methylase of chemotaxis methyl-accepting proteins [Cell motility and secretion / Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=98.60 E-value=1e-06 Score=72.07 Aligned_cols=109 Identities=17% Similarity=0.198 Sum_probs=70.2
Q ss_pred cCCeEEEeCCCCc----HHHHHHHHhC------CCeEEEEeCChHHHHHHHHHhHHh-----cCCCC-------------
Q 026036 77 ERRRCIELGSGTG----ALAIFLRKAM------NLDITTSDYNDQEIEDNIAYNSTT-----NGITP------------- 128 (244)
Q Consensus 77 ~~~~VLdlG~G~G----~~~~~~a~~~------~~~v~~~D~~~~~l~~~~~~~~~~-----~~~~~------------- 128 (244)
..-||+-.||+|| .+++.+.+.+ ..+|+|+|++..++ +.++.-.-. .+++.
T Consensus 96 ~~irIWSaaCStGEEpYSiAm~l~e~~~~~~~~~~~I~AtDId~~~L-~~A~~G~Y~~~~~~~~~~~~~~~ryF~~~~~~ 174 (268)
T COG1352 96 RPIRIWSAACSTGEEPYSLAMLLLEALGKLAGFRVKILATDIDLSVL-EKARAGIYPSRELLRGLPPELLRRYFERGGDG 174 (268)
T ss_pred CceEEEecCcCCCccHHHHHHHHHHHhccccCCceEEEEEECCHHHH-HHHhcCCCChhHhhccCCHHHHhhhEeecCCC
Confidence 3569999999999 4455555544 36799999999987 555421100 11110
Q ss_pred ------C-cceEeeecCCCCCC--CCCCccEEEEcccccCCcChHHHHHHHHHHHHhcCCCCceEeec
Q 026036 129 ------A-LPHIKHSWGDAFPI--PNPDWDLILASDILLYVKQYSNLIKSLSVLLKSYKPKDSQVGHL 187 (244)
Q Consensus 129 ------~-~~~~~~~~~~~~~~--~~~~fD~I~~~~~l~~~~~~~~l~~~l~~~~~~lk~gG~~~~~~ 187 (244)
. -..+.+...+.+.. ..+.||+|+|-+|+ --.+.+.-.+.+..++..|+|||.+++..
T Consensus 175 ~y~v~~~ir~~V~F~~~NLl~~~~~~~~fD~IfCRNVL-IYFd~~~q~~il~~f~~~L~~gG~LflG~ 241 (268)
T COG1352 175 SYRVKEELRKMVRFRRHNLLDDSPFLGKFDLIFCRNVL-IYFDEETQERILRRFADSLKPGGLLFLGH 241 (268)
T ss_pred cEEEChHHhcccEEeecCCCCCccccCCCCEEEEcceE-EeeCHHHHHHHHHHHHHHhCCCCEEEEcc
Confidence 0 01223333333221 34579999999998 32344555699999999999999988873
|
|
| >PF02390 Methyltransf_4: Putative methyltransferase ; InterPro: IPR003358 This entry represents tRNA (guanine-N-7) methyltransferase (2 | Back alignment and domain information |
|---|
Probab=98.60 E-value=3.7e-07 Score=71.56 Aligned_cols=102 Identities=19% Similarity=0.226 Sum_probs=65.9
Q ss_pred eEEEeCCCCcHHHHHHHHhC-CCeEEEEeCChHHHHHHHHHhHHhcCCCCCcceEeeecCCCCC-----CCCCCccEEEE
Q 026036 80 RCIELGSGTGALAIFLRKAM-NLDITTSDYNDQEIEDNIAYNSTTNGITPALPHIKHSWGDAFP-----IPNPDWDLILA 153 (244)
Q Consensus 80 ~VLdlG~G~G~~~~~~a~~~-~~~v~~~D~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~fD~I~~ 153 (244)
-+||||||.|...+.+|... ...++|+|+....+ ..+.+.+...++ ..+.+..++... +.++++|-|..
T Consensus 20 l~lEIG~G~G~~l~~~A~~~Pd~n~iGiE~~~~~v-~~a~~~~~~~~l----~Nv~~~~~da~~~l~~~~~~~~v~~i~i 94 (195)
T PF02390_consen 20 LILEIGCGKGEFLIELAKRNPDINFIGIEIRKKRV-AKALRKAEKRGL----KNVRFLRGDARELLRRLFPPGSVDRIYI 94 (195)
T ss_dssp EEEEET-TTSHHHHHHHHHSTTSEEEEEES-HHHH-HHHHHHHHHHTT----SSEEEEES-CTTHHHHHSTTTSEEEEEE
T ss_pred eEEEecCCCCHHHHHHHHHCCCCCEEEEecchHHH-HHHHHHHHhhcc----cceEEEEccHHHHHhhcccCCchheEEE
Confidence 89999999999999999887 67899999999876 455455555455 233333333322 23568898887
Q ss_pred cccccCCcChH-----HHHHHHHHHHHhcCCCCceEee
Q 026036 154 SDILLYVKQYS-----NLIKSLSVLLKSYKPKDSQVGH 186 (244)
Q Consensus 154 ~~~l~~~~~~~-----~l~~~l~~~~~~lk~gG~~~~~ 186 (244)
+.+=-++.... --...+..+++.|+|||.+.+.
T Consensus 95 ~FPDPWpK~rH~krRl~~~~fl~~~~~~L~~gG~l~~~ 132 (195)
T PF02390_consen 95 NFPDPWPKKRHHKRRLVNPEFLELLARVLKPGGELYFA 132 (195)
T ss_dssp ES-----SGGGGGGSTTSHHHHHHHHHHEEEEEEEEEE
T ss_pred eCCCCCcccchhhhhcCCchHHHHHHHHcCCCCEEEEE
Confidence 65432221100 1127888999999999998887
|
1.1.33 from EC), which catalyses the formation of N(7)-methylguanine at position 46 (m7G46) in tRNA. Capping of the pre-mRNA 5' end by addition a monomethylated guanosine cap (m(7)G) is an essential and the earliest modification in the biogenesis of mRNA []. The reaction is catalysed by three enzymes: triphosphatase, guanylyltransferase, and tRNA (guanine-N-7) methyltransferase [, ].; GO: 0008176 tRNA (guanine-N7-)-methyltransferase activity, 0006400 tRNA modification; PDB: 3DXZ_A 3DXY_A 3DXX_A 3CKK_A 3P2I_B 3P2K_D 3P2E_A 3MTE_B 3PB3_B 1YZH_B .... |
| >PF02384 N6_Mtase: N-6 DNA Methylase; InterPro: IPR003356 This domain is fpound in N-6 adenine-specific DNA methylase (2 | Back alignment and domain information |
|---|
Probab=98.58 E-value=2.6e-07 Score=77.83 Aligned_cols=123 Identities=14% Similarity=0.146 Sum_probs=75.6
Q ss_pred HHHHHHHhhccCcccCCeEEEeCCCCcHHHHHHHHh--------CCCeEEEEeCChHHHHHHHHHhHHhcCCCCCcceEe
Q 026036 63 FSFAEWLMHHREWIERRRCIELGSGTGALAIFLRKA--------MNLDITTSDYNDQEIEDNIAYNSTTNGITPALPHIK 134 (244)
Q Consensus 63 ~~l~~~~~~~~~~~~~~~VLdlG~G~G~~~~~~a~~--------~~~~v~~~D~~~~~l~~~~~~~~~~~~~~~~~~~~~ 134 (244)
..+++++.......++.+|+|-+||+|.+...+... ...+++|+|+++.++ ..++.|+...+..... ..
T Consensus 32 ~~i~~l~~~~~~~~~~~~VlDPacGsG~fL~~~~~~i~~~~~~~~~~~i~G~ei~~~~~-~la~~nl~l~~~~~~~--~~ 108 (311)
T PF02384_consen 32 REIVDLMVKLLNPKKGDSVLDPACGSGGFLVAAMEYIKEKRNKIKEINIYGIEIDPEAV-ALAKLNLLLHGIDNSN--IN 108 (311)
T ss_dssp HHHHHHHHHHHTT-TTEEEEETT-TTSHHHHHHHHHHHTCHHHHCCEEEEEEES-HHHH-HHHHHHHHHTTHHCBG--CE
T ss_pred HHHHHHHHhhhhccccceeechhhhHHHHHHHHHHhhcccccccccceeEeecCcHHHH-HHHHhhhhhhcccccc--cc
Confidence 345555555556667789999999999998877652 367899999999876 6777777665542221 12
Q ss_pred eecCCCCCC----CCCCccEEEEcccccCC--cC----------------hHHHHHHHHHHHHhcCCCCceEeecc
Q 026036 135 HSWGDAFPI----PNPDWDLILASDILLYV--KQ----------------YSNLIKSLSVLLKSYKPKDSQVGHLT 188 (244)
Q Consensus 135 ~~~~~~~~~----~~~~fD~I~~~~~l~~~--~~----------------~~~l~~~l~~~~~~lk~gG~~~~~~~ 188 (244)
..+++.+.. ....||+|+++.++-.. .. ...-...+..+.+.|++||+++++++
T Consensus 109 i~~~d~l~~~~~~~~~~~D~ii~NPPf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Fi~~~l~~Lk~~G~~~~Ilp 184 (311)
T PF02384_consen 109 IIQGDSLENDKFIKNQKFDVIIGNPPFGSKEWKDEELEKDERFKKYFPPKSNAEYAFIEHALSLLKPGGRAAIILP 184 (311)
T ss_dssp EEES-TTTSHSCTST--EEEEEEE--CTCES-STGGGCTTCCCTTCSSSTTEHHHHHHHHHHHTEEEEEEEEEEEE
T ss_pred ccccccccccccccccccccccCCCCccccccccccccccccccccCCCccchhhhhHHHHHhhcccccceeEEec
Confidence 333343321 14589999999887322 00 01112477888999999999877744
|
1.1.72 from EC) from Type I and Type IC restriction systems. These enzymes are responsible for the methylation of specific DNA sequences in order to prevent the host from digesting its own genome via its restriction enzymes. These methylases have the same sequence specificity as their corresponding restriction enzymes. The type I restriction and modification system is composed of three polypeptides R, M and S. The M and S subunits together form a methyltransferase that methylates two adenine residues in complementary strands of a bipartite DNA recognition sequence. In the presence of the R subunit, the complex can also act as an endonuclease, binding to the same target sequence but cutting the DNA some distance from this site. Whether the DNA is cut or modified depends on the methylation state of the target sequence. When the target site is unmodified, the DNA is cut. When the target site is hemimethylated, the complex acts as a maintenance methyltransferase, modifying the DNA so that both strands become methylated.; GO: 0003677 DNA binding, 0008170 N-methyltransferase activity, 0006306 DNA methylation; PDB: 2F8L_A 2Y7C_C 2Y7H_C 2AR0_B 3KHK_A 3LKD_A 2OKC_B. |
| >PRK11933 yebU rRNA (cytosine-C(5)-)-methyltransferase RsmF; Reviewed | Back alignment and domain information |
|---|
Probab=98.57 E-value=1.3e-06 Score=77.11 Aligned_cols=108 Identities=14% Similarity=0.171 Sum_probs=73.8
Q ss_pred CcccCCeEEEeCCCCcHHHHHHHHhC--CCeEEEEeCChHHHHHHHHHhHHhcCCCCCcceEeeecCCCC---CCCCCCc
Q 026036 74 EWIERRRCIELGSGTGALAIFLRKAM--NLDITTSDYNDQEIEDNIAYNSTTNGITPALPHIKHSWGDAF---PIPNPDW 148 (244)
Q Consensus 74 ~~~~~~~VLdlG~G~G~~~~~~a~~~--~~~v~~~D~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~f 148 (244)
.+.+|.+|||+|||.|.=+.++|... ...|++.|+++.-+ ..++.|+...++.+ +.+...|.. ......|
T Consensus 110 ~~~pg~~VLD~CAAPGgKTt~la~~l~~~g~lvA~D~~~~R~-~~L~~nl~r~G~~n----v~v~~~D~~~~~~~~~~~f 184 (470)
T PRK11933 110 DDNAPQRVLDMAAAPGSKTTQIAALMNNQGAIVANEYSASRV-KVLHANISRCGVSN----VALTHFDGRVFGAALPETF 184 (470)
T ss_pred CCCCCCEEEEeCCCccHHHHHHHHHcCCCCEEEEEeCCHHHH-HHHHHHHHHcCCCe----EEEEeCchhhhhhhchhhc
Confidence 34588999999999999999988876 45799999999876 78888888877732 222222322 1223579
Q ss_pred cEEEE----c--ccccCCc------ChH-------HHHHHHHHHHHhcCCCCceEee
Q 026036 149 DLILA----S--DILLYVK------QYS-------NLIKSLSVLLKSYKPKDSQVGH 186 (244)
Q Consensus 149 D~I~~----~--~~l~~~~------~~~-------~l~~~l~~~~~~lk~gG~~~~~ 186 (244)
|.|+. + .++..+. ... -..+.|..+.++|||||+++.+
T Consensus 185 D~ILvDaPCSG~G~~rk~p~~~~~~s~~~v~~l~~lQ~~iL~~A~~~LkpGG~LVYS 241 (470)
T PRK11933 185 DAILLDAPCSGEGTVRKDPDALKNWSPESNLEIAATQRELIESAFHALKPGGTLVYS 241 (470)
T ss_pred CeEEEcCCCCCCcccccCHHHhhhCCHHHHHHHHHHHHHHHHHHHHHcCCCcEEEEE
Confidence 99995 2 1111110 000 1147778889999999999877
|
|
| >KOG2920 consensus Predicted methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.57 E-value=5.5e-08 Score=78.76 Aligned_cols=131 Identities=18% Similarity=0.152 Sum_probs=83.3
Q ss_pred CcceeechHHHHHHHHhhc---cCcccCCeEEEeCCCCcHHHHHHHHhCCCeEEEEeCChHHHHHHHHHhHHhcCC----
Q 026036 54 NANFLWPGTFSFAEWLMHH---REWIERRRCIELGSGTGALAIFLRKAMNLDITTSDYNDQEIEDNIAYNSTTNGI---- 126 (244)
Q Consensus 54 ~~~~~w~~~~~l~~~~~~~---~~~~~~~~VLdlG~G~G~~~~~~a~~~~~~v~~~D~~~~~l~~~~~~~~~~~~~---- 126 (244)
.|...|-++..+..++... .-...+++|||+|||+|+.++.+...+...+.+.|.+.+.+.-..--|...+..
T Consensus 90 Gg~k~wecS~dl~~~l~~e~~~~~~~~~k~vLELgCg~~Lp~i~~~~~~~~~~~fqD~na~vl~~~t~pn~~~~~~~~~~ 169 (282)
T KOG2920|consen 90 GGLKLWECSVDLLPYLKEEIGAQMSFSGKRVLELGCGAALPGIFAFVKGAVSVHFQDFNAEVLRLVTLPNILVNSHAGVE 169 (282)
T ss_pred cceEEeecHHHHHHHHHHHhhhheEecCceeEecCCcccccchhhhhhccceeeeEecchhheeeecccceecchhhhhh
Confidence 3789999999999999855 345689999999999999999998887789999999987541111111111100
Q ss_pred -CCCcceEeeecC---CCCCCCCC--CccEEEEcccccCCcChHHHHHHHHHHHHhcCCCCceEee
Q 026036 127 -TPALPHIKHSWG---DAFPIPNP--DWDLILASDILLYVKQYSNLIKSLSVLLKSYKPKDSQVGH 186 (244)
Q Consensus 127 -~~~~~~~~~~~~---~~~~~~~~--~fD~I~~~~~l~~~~~~~~l~~~l~~~~~~lk~gG~~~~~ 186 (244)
+........... +..-...+ +||+|+++-++|.....+.+. .......+++.|.+++.
T Consensus 170 ~~e~~~~~~i~~s~l~dg~~~~t~~~~ydlIlsSetiy~~~~~~~~~--~~~r~~l~~~D~~~~~a 233 (282)
T KOG2920|consen 170 EKENHKVDEILNSLLSDGVFNHTERTHYDLILSSETIYSIDSLAVLY--LLHRPCLLKTDGVFYVA 233 (282)
T ss_pred hhhcccceeccccccccchhhhccccchhhhhhhhhhhCcchhhhhH--hhhhhhcCCccchhhhh
Confidence 000011111010 10111123 799999999997765555332 44555677888877665
|
|
| >COG1189 Predicted rRNA methylase [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=98.57 E-value=4.8e-07 Score=71.48 Aligned_cols=161 Identities=17% Similarity=0.154 Sum_probs=101.9
Q ss_pred ceeechHHHHHHHHhhccCcccCCeEEEeCCCCcHHHHHHHHhCCCeEEEEeCChHHHHHHHHHhHHhcCCCCCcceEee
Q 026036 56 NFLWPGTFSFAEWLMHHREWIERRRCIELGSGTGALAIFLRKAMNLDITTSDYNDQEIEDNIAYNSTTNGITPALPHIKH 135 (244)
Q Consensus 56 ~~~w~~~~~l~~~~~~~~~~~~~~~VLdlG~G~G~~~~~~a~~~~~~v~~~D~~~~~l~~~~~~~~~~~~~~~~~~~~~~ 135 (244)
.++..++..|...+....-..+|..+||+|+-||.++..+.+.++.+|+++|.....+.-.++.+. + .+.+
T Consensus 58 ~yVSRG~~KL~~ale~F~l~~k~kv~LDiGsSTGGFTd~lLq~gAk~VyavDVG~~Ql~~kLR~d~-------r--V~~~ 128 (245)
T COG1189 58 PYVSRGGLKLEKALEEFELDVKGKVVLDIGSSTGGFTDVLLQRGAKHVYAVDVGYGQLHWKLRNDP-------R--VIVL 128 (245)
T ss_pred CccccHHHHHHHHHHhcCcCCCCCEEEEecCCCccHHHHHHHcCCcEEEEEEccCCccCHhHhcCC-------c--EEEE
Confidence 455668999999888877778999999999999999999999989999999998876533333221 1 1111
Q ss_pred ecCCCC---C-CCCCCccEEEEcccccCCcChHHHHHHHHHHHHhcCCCCceEeec-ccccCCCCCCCCCCCeEEEeeee
Q 026036 136 SWGDAF---P-IPNPDWDLILASDILLYVKQYSNLIKSLSVLLKSYKPKDSQVGHL-TKNEQGEGTEGLPWPAFLMSWRR 210 (244)
Q Consensus 136 ~~~~~~---~-~~~~~fD~I~~~~~l~~~~~~~~l~~~l~~~~~~lk~gG~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~ 210 (244)
.-.+.- + ...+..|+|+| |+. +-.+...+..+..+++|++-++..+ +.++-...... ..- +.. .+
T Consensus 129 E~tN~r~l~~~~~~~~~d~~v~-DvS-----FISL~~iLp~l~~l~~~~~~~v~LvKPQFEagr~~v~-kkG-vv~--d~ 198 (245)
T COG1189 129 ERTNVRYLTPEDFTEKPDLIVI-DVS-----FISLKLILPALLLLLKDGGDLVLLVKPQFEAGREQVG-KKG-VVR--DP 198 (245)
T ss_pred ecCChhhCCHHHcccCCCeEEE-Eee-----hhhHHHHHHHHHHhcCCCceEEEEecchhhhhhhhcC-cCc-eec--Cc
Confidence 111111 0 11236788887 443 3456688899999999998776663 33322221111 000 010 01
Q ss_pred ccCccchhhHHHHHhhcCCeEEEec
Q 026036 211 RIGKEDETIFFTSCENAGLEVKHLG 235 (244)
Q Consensus 211 ~~~~~~~~~~~~~l~~~Gf~v~~~~ 235 (244)
.........+.+.+...||.+..+.
T Consensus 199 ~~~~~v~~~i~~~~~~~g~~~~gl~ 223 (245)
T COG1189 199 KLHAEVLSKIENFAKELGFQVKGLI 223 (245)
T ss_pred chHHHHHHHHHHHHhhcCcEEeeeE
Confidence 1111224677788888999988764
|
|
| >PF12147 Methyltransf_20: Putative methyltransferase; InterPro: IPR022744 This C-terminal region is found in bacteria and eukaryotes and is approximately 110 amino acids in length | Back alignment and domain information |
|---|
Probab=98.56 E-value=2.2e-06 Score=69.84 Aligned_cols=148 Identities=15% Similarity=0.109 Sum_probs=94.8
Q ss_pred cCCeEEEeCCCCcHHHHHHHHhC---CCeEEEEeCChHHHHHHHHHhHHhcCCCCCcceEeeecCCC--CCCCCCCccEE
Q 026036 77 ERRRCIELGSGTGALAIFLRKAM---NLDITTSDYNDQEIEDNIAYNSTTNGITPALPHIKHSWGDA--FPIPNPDWDLI 151 (244)
Q Consensus 77 ~~~~VLdlG~G~G~~~~~~a~~~---~~~v~~~D~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~fD~I 151 (244)
..-+||||.||.|..-+-+.... ..+|...|+++..+ +..+.-++..++.+.+.+...+..+. +.......+++
T Consensus 135 ~pvrIlDIAaG~GRYvlDal~~~~~~~~~i~LrDys~~Nv-~~g~~li~~~gL~~i~~f~~~dAfd~~~l~~l~p~P~l~ 213 (311)
T PF12147_consen 135 RPVRILDIAAGHGRYVLDALEKHPERPDSILLRDYSPINV-EKGRALIAERGLEDIARFEQGDAFDRDSLAALDPAPTLA 213 (311)
T ss_pred CceEEEEeccCCcHHHHHHHHhCCCCCceEEEEeCCHHHH-HHHHHHHHHcCCccceEEEecCCCCHhHhhccCCCCCEE
Confidence 45699999999998776665554 25799999999877 77778888888855444444333332 22235578999
Q ss_pred EEcccccCCcChHHHHHHHHHHHHhcCCCCceEeecccccCCC---CCCCCC---CCeEEEeeeeccCccchhhHHHHHh
Q 026036 152 LASDILLYVKQYSNLIKSLSVLLKSYKPKDSQVGHLTKNEQGE---GTEGLP---WPAFLMSWRRRIGKEDETIFFTSCE 225 (244)
Q Consensus 152 ~~~~~l~~~~~~~~l~~~l~~~~~~lk~gG~~~~~~~~~~~~~---~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~l~ 225 (244)
+.+..+-...+..-+..++..+.+.+.|||.++.+.-.+.... ...... -..|.+.+ | +..+.-++.+
T Consensus 214 iVsGL~ElF~Dn~lv~~sl~gl~~al~pgG~lIyTgQPwHPQle~IAr~LtsHr~g~~WvMRr--R----sq~EmD~Lv~ 287 (311)
T PF12147_consen 214 IVSGLYELFPDNDLVRRSLAGLARALEPGGYLIYTGQPWHPQLEMIARVLTSHRDGKAWVMRR--R----SQAEMDQLVE 287 (311)
T ss_pred EEecchhhCCcHHHHHHHHHHHHHHhCCCcEEEEcCCCCCcchHHHHHHHhcccCCCceEEEe--c----CHHHHHHHHH
Confidence 9988873333333355689999999999998777621111110 111111 12344422 2 1468889999
Q ss_pred hcCCeE
Q 026036 226 NAGLEV 231 (244)
Q Consensus 226 ~~Gf~v 231 (244)
++||+-
T Consensus 288 ~aGF~K 293 (311)
T PF12147_consen 288 AAGFEK 293 (311)
T ss_pred HcCCch
Confidence 999973
|
It is found in association with PF00561 from PFAM. Many members are annotated as being lysophospholipases, and others as alpha-beta hydrolase fold-containing proteins. This domain belongs to the S-adenosyl-L-methionine-dependent methyltransferases superfamily. |
| >PF01234 NNMT_PNMT_TEMT: NNMT/PNMT/TEMT family; InterPro: IPR000940 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals | Back alignment and domain information |
|---|
Probab=98.55 E-value=2.4e-07 Score=75.08 Aligned_cols=151 Identities=16% Similarity=0.212 Sum_probs=86.7
Q ss_pred cccCCeEEEeCCCCcHHHHHHHHhCCCeEEEEeCChHHHHHHHHHhHHhcCC-------------CC-------------
Q 026036 75 WIERRRCIELGSGTGALAIFLRKAMNLDITTSDYNDQEIEDNIAYNSTTNGI-------------TP------------- 128 (244)
Q Consensus 75 ~~~~~~VLdlG~G~G~~~~~~a~~~~~~v~~~D~~~~~l~~~~~~~~~~~~~-------------~~------------- 128 (244)
..+|.++||||||.-+.....|.....+|+.+|..+... +.+++.+...+. ++
T Consensus 54 ~~~g~~llDiGsGPtiy~~lsa~~~f~~I~l~dy~~~N~-~el~kWl~~~~a~DWs~~~~~v~~lEg~~~~~~e~e~~lR 132 (256)
T PF01234_consen 54 GVKGETLLDIGSGPTIYQLLSACEWFEEIVLSDYSEQNR-EELEKWLRKEGAFDWSPFWKYVCELEGKREKWEEKEEKLR 132 (256)
T ss_dssp SS-EEEEEEES-TT--GGGTTGGGTEEEEEEEESSHHHH-HHHHHHHTT-TS--THHHHHHHHHHTTSSSGHHHHHHHHH
T ss_pred CcCCCEEEEeCCCcHHHhhhhHHHhhcceEEeeccHhhH-HHHHHHHCCCCCCCccHHHHHHHhccCCcchhhhHHHHHH
Confidence 346789999999997776555555567899999998765 444443322111 00
Q ss_pred -Ccc-eEeeecCCCCCCC-----CCCccEEEEcccccCC-cChHHHHHHHHHHHHhcCCCCceEeecccccCCCCCCCCC
Q 026036 129 -ALP-HIKHSWGDAFPIP-----NPDWDLILASDILLYV-KQYSNLIKSLSVLLKSYKPKDSQVGHLTKNEQGEGTEGLP 200 (244)
Q Consensus 129 -~~~-~~~~~~~~~~~~~-----~~~fD~I~~~~~l~~~-~~~~~l~~~l~~~~~~lk~gG~~~~~~~~~~~~~~~~~~~ 200 (244)
.+. .+..+....-+.. .++||+|++..++-.. ...+.-.+.++++.++|||||.|++.-...
T Consensus 133 ~~Vk~Vv~cDV~~~~pl~~~~~~p~~~D~v~s~fcLE~a~~d~~~y~~al~ni~~lLkpGG~Lil~~~l~---------- 202 (256)
T PF01234_consen 133 RAVKQVVPCDVTQPNPLDPPVVLPPKFDCVISSFCLESACKDLDEYRRALRNISSLLKPGGHLILAGVLG---------- 202 (256)
T ss_dssp HHEEEEEE--TTSSSTTTTS-SS-SSEEEEEEESSHHHH-SSHHHHHHHHHHHHTTEEEEEEEEEEEESS----------
T ss_pred HhhceEEEeeccCCCCCCccccCccchhhhhhhHHHHHHcCCHHHHHHHHHHHHHHcCCCcEEEEEEEcC----------
Confidence 011 2233333332222 2359999999888211 245566799999999999999998872211
Q ss_pred CCeEEEeeee-ccCccchhhHHHHHhhcCCeEEEecc
Q 026036 201 WPAFLMSWRR-RIGKEDETIFFTSCENAGLEVKHLGS 236 (244)
Q Consensus 201 ~~~~~~~~~~-~~~~~~~~~~~~~l~~~Gf~v~~~~~ 236 (244)
...|..+-++ .....+.+...+.++++||+++....
T Consensus 203 ~t~Y~vG~~~F~~l~l~ee~v~~al~~aG~~i~~~~~ 239 (256)
T PF01234_consen 203 STYYMVGGHKFPCLPLNEEFVREALEEAGFDIEDLEK 239 (256)
T ss_dssp -SEEEETTEEEE---B-HHHHHHHHHHTTEEEEEEEG
T ss_pred ceeEEECCEecccccCCHHHHHHHHHHcCCEEEeccc
Confidence 1112222221 11122346667889999999998763
|
The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. Several cytoplasmic vertebrate methyltransferases are evolutionary related [], including nicotinamide N-methyltransferase (2.1.1.1 from EC) (NNMT); phenylethanolamine N-methyltransferase (2.1.1.28 from EC) (PNMT); and thioether S-methyltransferase (2.1.1.96 from EC) (TEMT). NNMT catalyzes the N-methylation of nicotinamide and other pyridines to form pyridinium ions. This activity is important for the biotransformation of many drugs and xenobiotic compounds. PNMT catalyzes the last step in catecholamine biosynthesis, the conversion of noradrenalin to adrenalin; and TEMT catalyzes the methylation of dimethyl sulphide into trimethylsulphonium. These three enzymes use S-adenosyl-L-methionine as the methyl donor. They are proteins of 30 to 32 kDa.; GO: 0008168 methyltransferase activity; PDB: 2IIP_C 3ROD_A 2OBF_A 3HCA_B 2ONY_B 3KR1_A 2OPB_B 3KQP_B 2AN4_B 3KQM_A .... |
| >PF05971 Methyltransf_10: Protein of unknown function (DUF890); InterPro: IPR010286 This family consists of several conserved hypothetical proteins from both eukaryotes and prokaryotes | Back alignment and domain information |
|---|
Probab=98.55 E-value=8.3e-07 Score=73.33 Aligned_cols=82 Identities=15% Similarity=0.299 Sum_probs=49.6
Q ss_pred CCeEEEeCCCCcHH-HHHHHHhCCCeEEEEeCChHHHHHHHHHhHHhc-CCCCCcceEeeecCCC----CCCCCCCccEE
Q 026036 78 RRRCIELGSGTGAL-AIFLRKAMNLDITTSDYNDQEIEDNIAYNSTTN-GITPALPHIKHSWGDA----FPIPNPDWDLI 151 (244)
Q Consensus 78 ~~~VLdlG~G~G~~-~~~~a~~~~~~v~~~D~~~~~l~~~~~~~~~~~-~~~~~~~~~~~~~~~~----~~~~~~~fD~I 151 (244)
..++||||+|...+ .+..++..+.+++|+|+++..+ +.+++|+..| .+..++..+....... +....+.||+.
T Consensus 103 ~v~glDIGTGAscIYpLLg~~~~~W~fvaTdID~~sl-~~A~~nv~~N~~L~~~I~l~~~~~~~~i~~~i~~~~e~~dft 181 (299)
T PF05971_consen 103 KVRGLDIGTGASCIYPLLGAKLYGWSFVATDIDPKSL-ESARENVERNPNLESRIELRKQKNPDNIFDGIIQPNERFDFT 181 (299)
T ss_dssp --EEEEES-TTTTHHHHHHHHHH--EEEEEES-HHHH-HHHHHHHHHT-T-TTTEEEEE--ST-SSTTTSTT--S-EEEE
T ss_pred ceEeecCCccHHHHHHHHhhhhcCCeEEEecCCHHHH-HHHHHHHHhccccccceEEEEcCCccccchhhhcccceeeEE
Confidence 56899999997744 5666666699999999999987 9999999999 8877776655433222 12234589999
Q ss_pred EEcccccCC
Q 026036 152 LASDILLYV 160 (244)
Q Consensus 152 ~~~~~l~~~ 160 (244)
+|++++|..
T Consensus 182 mCNPPFy~s 190 (299)
T PF05971_consen 182 MCNPPFYSS 190 (299)
T ss_dssp EE-----SS
T ss_pred ecCCccccC
Confidence 999998654
|
The function of members of this family are unknown but are predicted to be SAM-dependent methyltransferases.; GO: 0008168 methyltransferase activity; PDB: 2H00_A. |
| >COG0357 GidB Predicted S-adenosylmethionine-dependent methyltransferase involved in bacterial cell division [Cell envelope biogenesis, outer membrane] | Back alignment and domain information |
|---|
Probab=98.55 E-value=7.7e-07 Score=70.18 Aligned_cols=127 Identities=17% Similarity=0.180 Sum_probs=79.4
Q ss_pred CCeEEEeCCCCcHHHHHHHHhC-CCeEEEEeCChHHHHHHHHHhHHhcCCCCCcceEeeecCCCCCCCCCC-ccEEEEcc
Q 026036 78 RRRCIELGSGTGALAIFLRKAM-NLDITTSDYNDQEIEDNIAYNSTTNGITPALPHIKHSWGDAFPIPNPD-WDLILASD 155 (244)
Q Consensus 78 ~~~VLdlG~G~G~~~~~~a~~~-~~~v~~~D~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-fD~I~~~~ 155 (244)
+.+++|||+|.|.+|+.+|-.. ..+|+.+|....-+ ..++.-....+++ ++..+.....+..+ ... ||+|.+..
T Consensus 68 ~~~~~DIGSGaGfPGipLAI~~p~~~vtLles~~Kk~-~FL~~~~~eL~L~-nv~i~~~RaE~~~~--~~~~~D~vtsRA 143 (215)
T COG0357 68 AKRVLDIGSGAGFPGIPLAIAFPDLKVTLLESLGKKI-AFLREVKKELGLE-NVEIVHGRAEEFGQ--EKKQYDVVTSRA 143 (215)
T ss_pred CCEEEEeCCCCCCchhhHHHhccCCcEEEEccCchHH-HHHHHHHHHhCCC-CeEEehhhHhhccc--ccccCcEEEeeh
Confidence 5899999999999999988544 66799999987654 5555544444442 12233222222111 113 99999854
Q ss_pred cccCCcChHHHHHHHHHHHHhcCCCCceEeecccccCCCCCCCCCCCeEEEeeeeccCccchhhHHHHHhhcCCeEEEec
Q 026036 156 ILLYVKQYSNLIKSLSVLLKSYKPKDSQVGHLTKNEQGEGTEGLPWPAFLMSWRRRIGKEDETIFFTSCENAGLEVKHLG 235 (244)
Q Consensus 156 ~l~~~~~~~~l~~~l~~~~~~lk~gG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gf~v~~~~ 235 (244)
+ ..+...+.-+...+|+||.++.. +-....+-..+....+...|+.++.+.
T Consensus 144 v-------a~L~~l~e~~~pllk~~g~~~~~----------------------k~~~~~~e~~e~~~a~~~~~~~~~~~~ 194 (215)
T COG0357 144 V-------ASLNVLLELCLPLLKVGGGFLAY----------------------KGLAGKDELPEAEKAILPLGGQVEKVF 194 (215)
T ss_pred c-------cchHHHHHHHHHhcccCCcchhh----------------------hHHhhhhhHHHHHHHHHhhcCcEEEEE
Confidence 4 34557777888999998865421 000011113556677888888888775
Q ss_pred cE
Q 026036 236 SR 237 (244)
Q Consensus 236 ~~ 237 (244)
..
T Consensus 195 ~~ 196 (215)
T COG0357 195 SL 196 (215)
T ss_pred Ee
Confidence 43
|
|
| >PRK11783 rlmL 23S rRNA m(2)G2445 methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=98.49 E-value=2.9e-06 Score=78.97 Aligned_cols=130 Identities=17% Similarity=0.107 Sum_probs=85.2
Q ss_pred eechHHHHHHHHhhccCc-ccCCeEEEeCCCCcHHHHHHHHhC-------------------------------------
Q 026036 58 LWPGTFSFAEWLMHHREW-IERRRCIELGSGTGALAIFLRKAM------------------------------------- 99 (244)
Q Consensus 58 ~w~~~~~l~~~~~~~~~~-~~~~~VLdlG~G~G~~~~~~a~~~------------------------------------- 99 (244)
.-|-.+.||.-++..... .++..++|-+||+|.+.+.+|...
T Consensus 170 ~Apl~etlAaa~l~~a~w~~~~~~l~DP~CGSGTilIEAa~~~~~~~pg~~r~~f~f~~~~~~~~~~w~~~~~~a~~~~~ 249 (702)
T PRK11783 170 EAPLKENLAAAILLRSGWPQEGTPLLDPMCGSGTLLIEAAMMAADIAPGLHRERWGFSGWLGHDEALWQELLEEAQERAR 249 (702)
T ss_pred CCCCcHHHHHHHHHHcCCCCCCCeEEccCCCccHHHHHHHHHHhcCCCCccccccccccCCCCCHHHHHHHHHHHHHHHh
Confidence 334456777777765554 467899999999999998876531
Q ss_pred ------CCeEEEEeCChHHHHHHHHHhHHhcCCCCCcceEeeecCCCC-CCCCCCccEEEEcccccCCcC-hHHHHHH--
Q 026036 100 ------NLDITTSDYNDQEIEDNIAYNSTTNGITPALPHIKHSWGDAF-PIPNPDWDLILASDILLYVKQ-YSNLIKS-- 169 (244)
Q Consensus 100 ------~~~v~~~D~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~fD~I~~~~~l~~~~~-~~~l~~~-- 169 (244)
..+++|+|+++.++ +.++.|+..+++...+.....++.+.. +...++||+|++|.++..... ..++...
T Consensus 250 ~~~~~~~~~i~G~Did~~av-~~A~~N~~~~g~~~~i~~~~~D~~~~~~~~~~~~~d~IvtNPPYg~r~~~~~~l~~lY~ 328 (702)
T PRK11783 250 AGLAELPSKFYGSDIDPRVI-QAARKNARRAGVAELITFEVKDVADLKNPLPKGPTGLVISNPPYGERLGEEPALIALYS 328 (702)
T ss_pred hcccccCceEEEEECCHHHH-HHHHHHHHHcCCCcceEEEeCChhhcccccccCCCCEEEECCCCcCccCchHHHHHHHH
Confidence 13699999999997 899999999988654444444443321 112347999999988632211 1223333
Q ss_pred -HHHHHHhcCCCCceEeecc
Q 026036 170 -LSVLLKSYKPKDSQVGHLT 188 (244)
Q Consensus 170 -l~~~~~~lk~gG~~~~~~~ 188 (244)
+.+..+...+|++.++.+.
T Consensus 329 ~lg~~lk~~~~g~~~~llt~ 348 (702)
T PRK11783 329 QLGRRLKQQFGGWNAALFSS 348 (702)
T ss_pred HHHHHHHHhCCCCeEEEEeC
Confidence 3333444448988877743
|
|
| >PF09445 Methyltransf_15: RNA cap guanine-N2 methyltransferase; InterPro: IPR019012 RNA cap guanine-N2 methyltransferases such as Schizosaccharomyces pombe (Fission yeast) trimethylguanosine synthase (Tgs1) and Giardia lamblia (Giardia intestinalis) Tgs2, catalyse the methylation step(s) for the conversion of the 7-monomethylguanosine (m(7)G) caps of snRNAs and snoRNAs to a 2,2,7-trimethylguanosine (m(2,2,7)G) cap structure [, , ] | Back alignment and domain information |
|---|
Probab=98.48 E-value=2e-07 Score=70.41 Aligned_cols=76 Identities=12% Similarity=0.170 Sum_probs=53.3
Q ss_pred eEEEeCCCCcHHHHHHHHhCCCeEEEEeCChHHHHHHHHHhHHhcCCCCCcceEeeecCCCCCCC-CC-CccEEEEcccc
Q 026036 80 RCIELGSGTGALAIFLRKAMNLDITTSDYNDQEIEDNIAYNSTTNGITPALPHIKHSWGDAFPIP-NP-DWDLILASDIL 157 (244)
Q Consensus 80 ~VLdlG~G~G~~~~~~a~~~~~~v~~~D~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~-~fD~I~~~~~l 157 (244)
.|+|+.||.|..++.+|+. ..+|+++|+++..+ +.++.|+...++..++..+..+|.+..... .. .+|+|+++++.
T Consensus 2 ~vlD~fcG~GGNtIqFA~~-~~~Viaidid~~~~-~~a~hNa~vYGv~~~I~~i~gD~~~~~~~~~~~~~~D~vFlSPPW 79 (163)
T PF09445_consen 2 TVLDAFCGVGGNTIQFART-FDRVIAIDIDPERL-ECAKHNAEVYGVADNIDFICGDFFELLKRLKSNKIFDVVFLSPPW 79 (163)
T ss_dssp EEEETT-TTSHHHHHHHHT-T-EEEEEES-HHHH-HHHHHHHHHTT-GGGEEEEES-HHHHGGGB------SEEEE---B
T ss_pred EEEEeccCcCHHHHHHHHh-CCeEEEEECCHHHH-HHHHHHHHHcCCCCcEEEEeCCHHHHHhhccccccccEEEECCCC
Confidence 6999999999999999987 77899999999987 899999999988777777777765543221 12 28999997764
|
Trimethylguanosine synthase is specific for guanine, and N7 methylation must precede N2 methylation. This enzyme is required for pre-mRNA splicing, pre-rRNA processing and small ribosomal subunit synthesis. As such, this enzyme plays a role in transcriptional regulation. ; GO: 0008168 methyltransferase activity, 0001510 RNA methylation, 0009452 RNA capping; PDB: 3EGI_B 3GDH_A. |
| >PLN02823 spermine synthase | Back alignment and domain information |
|---|
Probab=98.47 E-value=8.6e-07 Score=75.06 Aligned_cols=107 Identities=14% Similarity=0.132 Sum_probs=68.5
Q ss_pred cCCeEEEeCCCCcHHHHHHHHhC-CCeEEEEeCChHHHHHHHHHhHHhcCCCCCcceEeeecCCCC---CCCCCCccEEE
Q 026036 77 ERRRCIELGSGTGALAIFLRKAM-NLDITTSDYNDQEIEDNIAYNSTTNGITPALPHIKHSWGDAF---PIPNPDWDLIL 152 (244)
Q Consensus 77 ~~~~VLdlG~G~G~~~~~~a~~~-~~~v~~~D~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~fD~I~ 152 (244)
..++||.||+|.|..+..+.+.. ..+|+++|++++++ +.+++....+.-...-..+++..+|.. ....++||+|+
T Consensus 103 ~pk~VLiiGgG~G~~~re~l~~~~~~~v~~VEiD~~vv-~lar~~~~~~~~~~~dprv~v~~~Da~~~L~~~~~~yDvIi 181 (336)
T PLN02823 103 NPKTVFIMGGGEGSTAREVLRHKTVEKVVMCDIDQEVV-DFCRKHLTVNREAFCDKRLELIINDARAELEKRDEKFDVII 181 (336)
T ss_pred CCCEEEEECCCchHHHHHHHhCCCCCeEEEEECCHHHH-HHHHHhcccccccccCCceEEEEChhHHHHhhCCCCccEEE
Confidence 45699999999999998877654 56899999999976 788776543321001122333344332 23346899999
Q ss_pred EcccccCCcC--hH-H--HHHHHH-HHHHhcCCCCceEee
Q 026036 153 ASDILLYVKQ--YS-N--LIKSLS-VLLKSYKPKDSQVGH 186 (244)
Q Consensus 153 ~~~~l~~~~~--~~-~--l~~~l~-~~~~~lk~gG~~~~~ 186 (244)
+ |+. .... .. . -...++ .+.+.|+|||.+++.
T Consensus 182 ~-D~~-dp~~~~~~~~Lyt~eF~~~~~~~~L~p~Gvlv~q 219 (336)
T PLN02823 182 G-DLA-DPVEGGPCYQLYTKSFYERIVKPKLNPGGIFVTQ 219 (336)
T ss_pred e-cCC-CccccCcchhhccHHHHHHHHHHhcCCCcEEEEe
Confidence 7 432 2210 00 0 125666 788999999987655
|
|
| >PF03141 Methyltransf_29: Putative S-adenosyl-L-methionine-dependent methyltransferase; InterPro: IPR004159 Members of this family of hypothetical plant proteins are putative methyltransferases | Back alignment and domain information |
|---|
Probab=98.47 E-value=1.6e-07 Score=81.66 Aligned_cols=124 Identities=14% Similarity=0.205 Sum_probs=75.0
Q ss_pred cceeechHHHHHHHHhhccCc--ccC--CeEEEeCCCCcHHHHHHHHhCCCeEEEEeCChHHHHHHHHHhHHhcCCCCCc
Q 026036 55 ANFLWPGTFSFAEWLMHHREW--IER--RRCIELGSGTGALAIFLRKAMNLDITTSDYNDQEIEDNIAYNSTTNGITPAL 130 (244)
Q Consensus 55 ~~~~w~~~~~l~~~~~~~~~~--~~~--~~VLdlG~G~G~~~~~~a~~~~~~v~~~D~~~~~l~~~~~~~~~~~~~~~~~ 130 (244)
|.++..++..-.+.|.+.... ..| ..+||+|||+|.++..+..+ + |+.+-+.+....++..+.+..-+++.-+
T Consensus 91 gt~F~~Ga~~Yid~i~~~~~~~~~~g~iR~~LDvGcG~aSF~a~l~~r-~--V~t~s~a~~d~~~~qvqfaleRGvpa~~ 167 (506)
T PF03141_consen 91 GTMFPHGADHYIDQIAEMIPLIKWGGGIRTALDVGCGVASFGAYLLER-N--VTTMSFAPNDEHEAQVQFALERGVPAMI 167 (506)
T ss_pred CccccCCHHHHHHHHHHHhhccccCCceEEEEeccceeehhHHHHhhC-C--ceEEEcccccCCchhhhhhhhcCcchhh
Confidence 555555666555555554433 222 36999999999999888655 3 3333332211111111222333442111
Q ss_pred ceEeeecCCCCCCCCCCccEEEEcccccCCcChHHHHHHHHHHHHhcCCCCceEee
Q 026036 131 PHIKHSWGDAFPIPNPDWDLILASDILLYVKQYSNLIKSLSVLLKSYKPKDSQVGH 186 (244)
Q Consensus 131 ~~~~~~~~~~~~~~~~~fD~I~~~~~l~~~~~~~~l~~~l~~~~~~lk~gG~~~~~ 186 (244)
. .-....+++++..||+|-|+.|+-.+.... ...|-++-|+|+|||.|+++
T Consensus 168 ~---~~~s~rLPfp~~~fDmvHcsrc~i~W~~~~--g~~l~evdRvLRpGGyfv~S 218 (506)
T PF03141_consen 168 G---VLGSQRLPFPSNAFDMVHCSRCLIPWHPND--GFLLFEVDRVLRPGGYFVLS 218 (506)
T ss_pred h---hhccccccCCccchhhhhcccccccchhcc--cceeehhhhhhccCceEEec
Confidence 1 112356889999999999999984443333 25778899999999998887
|
; GO: 0008168 methyltransferase activity |
| >KOG3045 consensus Predicted RNA methylase involved in rRNA processing [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=98.46 E-value=7.2e-07 Score=71.12 Aligned_cols=111 Identities=16% Similarity=0.176 Sum_probs=79.4
Q ss_pred cCCeEEEeCCCCcHHHHHHHHhCCCeEEEEeCChHHHHHHHHHhHHhcCCCCCcceEeeecCCCCCCCCCCccEEEEccc
Q 026036 77 ERRRCIELGSGTGALAIFLRKAMNLDITTSDYNDQEIEDNIAYNSTTNGITPALPHIKHSWGDAFPIPNPDWDLILASDI 156 (244)
Q Consensus 77 ~~~~VLdlG~G~G~~~~~~a~~~~~~v~~~D~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fD~I~~~~~ 156 (244)
....|-|+|||-+-++. .-..+|...|+-+.. . ..+..+..+ .|..+++.|++|+.-.
T Consensus 180 ~~~vIaD~GCGEakiA~----~~~~kV~SfDL~a~~------------~-----~V~~cDm~~-vPl~d~svDvaV~CLS 237 (325)
T KOG3045|consen 180 KNIVIADFGCGEAKIAS----SERHKVHSFDLVAVN------------E-----RVIACDMRN-VPLEDESVDVAVFCLS 237 (325)
T ss_pred CceEEEecccchhhhhh----ccccceeeeeeecCC------------C-----ceeeccccC-CcCccCcccEEEeeHh
Confidence 45689999999998764 225568888864310 0 122333333 6777889999887665
Q ss_pred ccCCcChHHHHHHHHHHHHhcCCCCceEeecccccCCCCCCCCCCCeEEEeeeeccCccchhhHHHHHhhcCCeEEEec
Q 026036 157 LLYVKQYSNLIKSLSVLLKSYKPKDSQVGHLTKNEQGEGTEGLPWPAFLMSWRRRIGKEDETIFFTSCENAGLEVKHLG 235 (244)
Q Consensus 157 l~~~~~~~~l~~~l~~~~~~lk~gG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gf~v~~~~ 235 (244)
+ . ..++...+.++.|+|++||.++|. ..+.|+.. ...|.+.+...||++++..
T Consensus 238 L-M---gtn~~df~kEa~RiLk~gG~l~IA--------------------Ev~SRf~d--v~~f~r~l~~lGF~~~~~d 290 (325)
T KOG3045|consen 238 L-M---GTNLADFIKEANRILKPGGLLYIA--------------------EVKSRFSD--VKGFVRALTKLGFDVKHKD 290 (325)
T ss_pred h-h---cccHHHHHHHHHHHhccCceEEEE--------------------ehhhhccc--HHHHHHHHHHcCCeeeehh
Confidence 5 2 346779999999999999987765 23445543 7889999999999998775
|
|
| >KOG3178 consensus Hydroxyindole-O-methyltransferase and related SAM-dependent methyltransferases [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.43 E-value=1.4e-06 Score=72.68 Aligned_cols=149 Identities=17% Similarity=0.127 Sum_probs=95.2
Q ss_pred CeEEEeCCCCcHHHHHHHHhCCCeEEEEeCChHHHHHHHHHhHHhcCCCCCcceEeeecCCCCCCCCCCccEEEEccccc
Q 026036 79 RRCIELGSGTGALAIFLRKAMNLDITTSDYNDQEIEDNIAYNSTTNGITPALPHIKHSWGDAFPIPNPDWDLILASDILL 158 (244)
Q Consensus 79 ~~VLdlG~G~G~~~~~~a~~~~~~v~~~D~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fD~I~~~~~l~ 158 (244)
...+|+|+|.|.++..+... ..+|-+++.+...+ ...+.+.. .++ +...++.+.. .++-|+|++-.++
T Consensus 179 ~~avDvGgGiG~v~k~ll~~-fp~ik~infdlp~v-~~~a~~~~-~gV-------~~v~gdmfq~-~P~~daI~mkWiL- 246 (342)
T KOG3178|consen 179 NVAVDVGGGIGRVLKNLLSK-YPHIKGINFDLPFV-LAAAPYLA-PGV-------EHVAGDMFQD-TPKGDAIWMKWIL- 246 (342)
T ss_pred ceEEEcCCcHhHHHHHHHHh-CCCCceeecCHHHH-Hhhhhhhc-CCc-------ceeccccccc-CCCcCeEEEEeec-
Confidence 68999999999999888774 56699999987765 33333332 232 2223344433 4456899999999
Q ss_pred CCcChHHHHHHHHHHHHhcCCCCceEeecccccCCC--C---CCCCCC-CeEEEeeeeccCccchhhHHHHHhhcCCeEE
Q 026036 159 YVKQYSNLIKSLSVLLKSYKPKDSQVGHLTKNEQGE--G---TEGLPW-PAFLMSWRRRIGKEDETIFFTSCENAGLEVK 232 (244)
Q Consensus 159 ~~~~~~~l~~~l~~~~~~lk~gG~~~~~~~~~~~~~--~---~~~~~~-~~~~~~~~~~~~~~~~~~~~~~l~~~Gf~v~ 232 (244)
++-..+++.+.|+++...|+|||.+++...-.++.. . ...... ...+....+--...+..+|..++.++||.+.
T Consensus 247 hdwtDedcvkiLknC~~sL~~~GkIiv~E~V~p~e~~~dd~~s~v~~~~d~lm~~~~~~Gkert~~e~q~l~~~~gF~~~ 326 (342)
T KOG3178|consen 247 HDWTDEDCVKILKNCKKSLPPGGKIIVVENVTPEEDKFDDIDSSVTRDMDLLMLTQTSGGKERTLKEFQALLPEEGFPVC 326 (342)
T ss_pred ccCChHHHHHHHHHHHHhCCCCCEEEEEeccCCCCCCccccccceeehhHHHHHHHhccceeccHHHHHhcchhhcCcee
Confidence 666678999999999999999999988844222211 1 000111 1111111111111124788889999999988
Q ss_pred EeccEEE
Q 026036 233 HLGSRVY 239 (244)
Q Consensus 233 ~~~~~~~ 239 (244)
.+.-..|
T Consensus 327 ~~~~~~~ 333 (342)
T KOG3178|consen 327 MVALTAY 333 (342)
T ss_pred EEEeccC
Confidence 8765544
|
|
| >KOG1661 consensus Protein-L-isoaspartate(D-aspartate) O-methyltransferase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=98.39 E-value=2.4e-06 Score=66.18 Aligned_cols=116 Identities=14% Similarity=0.117 Sum_probs=73.2
Q ss_pred hHHHHHHHHhhccC--cccCCeEEEeCCCCcHHHHHHHHhC---CCeEEEEeCChHHHHHHHHHhHHhcCCCC------C
Q 026036 61 GTFSFAEWLMHHRE--WIERRRCIELGSGTGALAIFLRKAM---NLDITTSDYNDQEIEDNIAYNSTTNGITP------A 129 (244)
Q Consensus 61 ~~~~l~~~~~~~~~--~~~~~~VLdlG~G~G~~~~~~a~~~---~~~v~~~D~~~~~l~~~~~~~~~~~~~~~------~ 129 (244)
++..+-..+.+... +.+|.+.||+|+|||.++-.++... +..++|+|.-++.+ +..++|+...-... .
T Consensus 64 SAp~mha~~le~L~~~L~pG~s~LdvGsGSGYLt~~~~~mvg~~g~~~~GIEh~~eLV-e~Sk~nl~k~i~~~e~~~~~~ 142 (237)
T KOG1661|consen 64 SAPHMHATALEYLDDHLQPGASFLDVGSGSGYLTACFARMVGATGGNVHGIEHIPELV-EYSKKNLDKDITTSESSSKLK 142 (237)
T ss_pred cchHHHHHHHHHHHHhhccCcceeecCCCccHHHHHHHHHhcCCCccccchhhhHHHH-HHHHHHHHhhccCchhhhhhc
Confidence 34444444443333 5689999999999999998887655 33458999988865 77777776443110 0
Q ss_pred cceEeeecCCCCC--CCCCCccEEEEcccccCCcChHHHHHHHHHHHHhcCCCCceEee
Q 026036 130 LPHIKHSWGDAFP--IPNPDWDLILASDILLYVKQYSNLIKSLSVLLKSYKPKDSQVGH 186 (244)
Q Consensus 130 ~~~~~~~~~~~~~--~~~~~fD~I~~~~~l~~~~~~~~l~~~l~~~~~~lk~gG~~~~~ 186 (244)
-....+..+|... ....+||.|.+.... + +..+++...|++||++++-
T Consensus 143 ~~~l~ivvGDgr~g~~e~a~YDaIhvGAaa------~---~~pq~l~dqL~~gGrllip 192 (237)
T KOG1661|consen 143 RGELSIVVGDGRKGYAEQAPYDAIHVGAAA------S---ELPQELLDQLKPGGRLLIP 192 (237)
T ss_pred cCceEEEeCCccccCCccCCcceEEEccCc------c---ccHHHHHHhhccCCeEEEe
Confidence 0111222334322 234589999986332 2 4456688889999998876
|
|
| >TIGR02987 met_A_Alw26 type II restriction m6 adenine DNA methyltransferase, Alw26I/Eco31I/Esp3I family | Back alignment and domain information |
|---|
Probab=98.36 E-value=4.6e-06 Score=75.32 Aligned_cols=76 Identities=13% Similarity=0.107 Sum_probs=50.5
Q ss_pred cCCeEEEeCCCCcHHHHHHHHhC---------CCeEEEEeCChHHHHHHHHHhHHhcCCCCCcceEeeecCCCC------
Q 026036 77 ERRRCIELGSGTGALAIFLRKAM---------NLDITTSDYNDQEIEDNIAYNSTTNGITPALPHIKHSWGDAF------ 141 (244)
Q Consensus 77 ~~~~VLdlG~G~G~~~~~~a~~~---------~~~v~~~D~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~------ 141 (244)
.+.+|||.|||+|.+...++... ..+++++|+++.++ ..++.++...+. ... ...+.+.+
T Consensus 31 ~~~~ilDP~cGsG~fl~~~~~~~~~~~~~~~~~~~i~g~DId~~a~-~~a~~~l~~~~~-~~~---~i~~~d~l~~~~~~ 105 (524)
T TIGR02987 31 TKTKIIDPCCGDGRLIAALLKKNEEINYFKEVELNIYFADIDKTLL-KRAKKLLGEFAL-LEI---NVINFNSLSYVLLN 105 (524)
T ss_pred cceEEEeCCCCccHHHHHHHHHHHhcCCcccceeeeeeechhHHHH-HHHHHHHhhcCC-CCc---eeeecccccccccc
Confidence 45699999999999988876544 25699999999876 777777655431 011 11111111
Q ss_pred -CCCCCCccEEEEcccc
Q 026036 142 -PIPNPDWDLILASDIL 157 (244)
Q Consensus 142 -~~~~~~fD~I~~~~~l 157 (244)
....++||+|++|+++
T Consensus 106 ~~~~~~~fD~IIgNPPy 122 (524)
T TIGR02987 106 IESYLDLFDIVITNPPY 122 (524)
T ss_pred cccccCcccEEEeCCCc
Confidence 1112579999999986
|
Members of this family are the m6-adenine DNA methyltransferase protein, or domain of a fusion protein that also carries m5 cytosine methyltransferase activity, of type II restriction systems of the Alw26I/Eco31I/Esp3I family. A methyltransferase of this family is alway accompanied by a type II restriction endonuclease from the Alw26I/Eco31I/Esp3I family (TIGR02986) and by an adenine-specific modification methyltransferase. Members of this family are unusual in that regions of similarity to homologs outside this family are circularly permuted. |
| >KOG0820 consensus Ribosomal RNA adenine dimethylase [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=98.36 E-value=3.1e-06 Score=68.08 Aligned_cols=89 Identities=13% Similarity=0.210 Sum_probs=63.3
Q ss_pred HHHHHHhhccCcccCCeEEEeCCCCcHHHHHHHHhCCCeEEEEeCChHHHHHHHHHhHHhcCCCCCcceEeeecCCCCCC
Q 026036 64 SFAEWLMHHREWIERRRCIELGSGTGALAIFLRKAMNLDITTSDYNDQEIEDNIAYNSTTNGITPALPHIKHSWGDAFPI 143 (244)
Q Consensus 64 ~l~~~~~~~~~~~~~~~VLdlG~G~G~~~~~~a~~~~~~v~~~D~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 143 (244)
.+.+.+.......++..|||+|-|||.++..+.+. +++|+++++++.|+ +.+++...-...+.. .++-.+|.+..
T Consensus 45 ~v~~~I~~ka~~k~tD~VLEvGPGTGnLT~~lLe~-~kkVvA~E~Dprmv-ael~krv~gtp~~~k---LqV~~gD~lK~ 119 (315)
T KOG0820|consen 45 LVIDQIVEKADLKPTDVVLEVGPGTGNLTVKLLEA-GKKVVAVEIDPRMV-AELEKRVQGTPKSGK---LQVLHGDFLKT 119 (315)
T ss_pred HHHHHHHhccCCCCCCEEEEeCCCCCHHHHHHHHh-cCeEEEEecCcHHH-HHHHHHhcCCCccce---eeEEecccccC
Confidence 34445555567778899999999999999999876 88999999999987 555554432222222 33344566666
Q ss_pred CCCCccEEEEcccc
Q 026036 144 PNPDWDLILASDIL 157 (244)
Q Consensus 144 ~~~~fD~I~~~~~l 157 (244)
..+.||.+|++-+.
T Consensus 120 d~P~fd~cVsNlPy 133 (315)
T KOG0820|consen 120 DLPRFDGCVSNLPY 133 (315)
T ss_pred CCcccceeeccCCc
Confidence 66789999986553
|
|
| >COG0220 Predicted S-adenosylmethionine-dependent methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.34 E-value=2.8e-06 Score=67.91 Aligned_cols=106 Identities=14% Similarity=0.113 Sum_probs=70.2
Q ss_pred CeEEEeCCCCcHHHHHHHHhC-CCeEEEEeCChHHHHHHHHHhHHhcCCCCCcceEeeecCCCCC--CCCCCccEEEEcc
Q 026036 79 RRCIELGSGTGALAIFLRKAM-NLDITTSDYNDQEIEDNIAYNSTTNGITPALPHIKHSWGDAFP--IPNPDWDLILASD 155 (244)
Q Consensus 79 ~~VLdlG~G~G~~~~~~a~~~-~~~v~~~D~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~fD~I~~~~ 155 (244)
..+||||||.|...+.+|+.. ...++|+|+....+ ..+.+.+...+++ ++..+..+..+.+. .++++.|-|..+.
T Consensus 50 pi~lEIGfG~G~~l~~~A~~nP~~nfiGiEi~~~~v-~~~l~k~~~~~l~-Nlri~~~DA~~~l~~~~~~~sl~~I~i~F 127 (227)
T COG0220 50 PIVLEIGFGMGEFLVEMAKKNPEKNFLGIEIRVPGV-AKALKKIKELGLK-NLRLLCGDAVEVLDYLIPDGSLDKIYINF 127 (227)
T ss_pred cEEEEECCCCCHHHHHHHHHCCCCCEEEEEEehHHH-HHHHHHHHHcCCC-cEEEEcCCHHHHHHhcCCCCCeeEEEEEC
Confidence 489999999999999999887 56799999998766 4555555555552 22233222222222 2344888888765
Q ss_pred cccCCcChH-----HHHHHHHHHHHhcCCCCceEee
Q 026036 156 ILLYVKQYS-----NLIKSLSVLLKSYKPKDSQVGH 186 (244)
Q Consensus 156 ~l~~~~~~~-----~l~~~l~~~~~~lk~gG~~~~~ 186 (244)
+=-++.... --...++.+.+.|+|||.+.+.
T Consensus 128 PDPWpKkRH~KRRl~~~~fl~~~a~~Lk~gG~l~~a 163 (227)
T COG0220 128 PDPWPKKRHHKRRLTQPEFLKLYARKLKPGGVLHFA 163 (227)
T ss_pred CCCCCCccccccccCCHHHHHHHHHHccCCCEEEEE
Confidence 542221111 1127788999999999998887
|
|
| >PF13679 Methyltransf_32: Methyltransferase domain | Back alignment and domain information |
|---|
Probab=98.34 E-value=1e-05 Score=60.13 Aligned_cols=79 Identities=20% Similarity=0.276 Sum_probs=51.3
Q ss_pred ccCCeEEEeCCCCcHHHHHHHH-----hCCCeEEEEeCChHHHHHHHHHhHHhcC--CCCCcceEeeecCCCCCCCCCCc
Q 026036 76 IERRRCIELGSGTGALAIFLRK-----AMNLDITTSDYNDQEIEDNIAYNSTTNG--ITPALPHIKHSWGDAFPIPNPDW 148 (244)
Q Consensus 76 ~~~~~VLdlG~G~G~~~~~~a~-----~~~~~v~~~D~~~~~l~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~f 148 (244)
.+..+|+|+|||.|.++..++. ..+.+|+++|.++..+ +.+.+...... .............+. ......
T Consensus 24 ~~~~~vvD~GsG~GyLs~~La~~l~~~~~~~~v~~iD~~~~~~-~~a~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~ 100 (141)
T PF13679_consen 24 KRCITVVDLGSGKGYLSRALAHLLCNSSPNLRVLGIDCNESLV-ESAQKRAQKLGSDLEKRLSFIQGDIADE--SSSDPP 100 (141)
T ss_pred CCCCEEEEeCCChhHHHHHHHHHHHhcCCCCeEEEEECCcHHH-HHHHHHHHHhcchhhccchhhccchhhh--cccCCC
Confidence 5677999999999999999988 5688999999999876 55554444333 211222222111111 114567
Q ss_pred cEEEEcccc
Q 026036 149 DLILASDIL 157 (244)
Q Consensus 149 D~I~~~~~l 157 (244)
+++++.+.-
T Consensus 101 ~~~vgLHaC 109 (141)
T PF13679_consen 101 DILVGLHAC 109 (141)
T ss_pred eEEEEeecc
Confidence 888887665
|
|
| >PF07942 N2227: N2227-like protein; InterPro: IPR012901 This family features sequences that are similar to a region of hypothetical yeast gene product N2227 (P53934 from SWISSPROT) | Back alignment and domain information |
|---|
Probab=98.33 E-value=2.8e-05 Score=63.55 Aligned_cols=144 Identities=16% Similarity=0.173 Sum_probs=87.6
Q ss_pred ccCCeEEEeCCCCcHHHHHHHHhCCCeEEEEeCChHHHHHHHH-HhH--HhcCC---------C------CCcce-----
Q 026036 76 IERRRCIELGSGTGALAIFLRKAMNLDITTSDYNDQEIEDNIA-YNS--TTNGI---------T------PALPH----- 132 (244)
Q Consensus 76 ~~~~~VLdlG~G~G~~~~~~a~~~~~~v~~~D~~~~~l~~~~~-~~~--~~~~~---------~------~~~~~----- 132 (244)
..+.+||==|||.|.++..+|.+ +..+.|.|.|--|+...-- .|. ..+.. + .++..
T Consensus 55 ~~~~~VLVPGsGLGRLa~Eia~~-G~~~~gnE~S~~Mll~s~fiLn~~~~~~~~~I~Pf~~~~sn~~~~~dqlr~v~iPD 133 (270)
T PF07942_consen 55 RSKIRVLVPGSGLGRLAWEIAKL-GYAVQGNEFSYFMLLASNFILNHCSQPNQFTIYPFVHSFSNQKSREDQLRPVRIPD 133 (270)
T ss_pred CCccEEEEcCCCcchHHHHHhhc-cceEEEEEchHHHHHHHHHHHcccCCCCcEEEecceecccCCCCHHHhCCceEeCC
Confidence 34579999999999999999987 7799999999988522110 111 00100 0 00111
Q ss_pred ------------EeeecCCCCC--CC---CCCccEEEEcccccCCcChHHHHHHHHHHHHhcCCCCceEeecccccCCCC
Q 026036 133 ------------IKHSWGDAFP--IP---NPDWDLILASDILLYVKQYSNLIKSLSVLLKSYKPKDSQVGHLTKNEQGEG 195 (244)
Q Consensus 133 ------------~~~~~~~~~~--~~---~~~fD~I~~~~~l~~~~~~~~l~~~l~~~~~~lk~gG~~~~~~~~~~~~~~ 195 (244)
..+..+|... .. .++||+|+....+ ...+++.+.|+.+.++|||||.++=. ++
T Consensus 134 v~p~~~~~~~~~~sm~aGDF~e~y~~~~~~~~~d~VvT~FFI---DTA~Ni~~Yi~tI~~lLkpgG~WIN~--GP----- 203 (270)
T PF07942_consen 134 VDPSSELPSPSNLSMCAGDFLEVYGPDENKGSFDVVVTCFFI---DTAENIIEYIETIEHLLKPGGYWINF--GP----- 203 (270)
T ss_pred cCcccccCCCCceeEecCccEEecCCcccCCcccEEEEEEEe---echHHHHHHHHHHHHHhccCCEEEec--CC-----
Confidence 1112222111 11 3589999997554 45778999999999999999954322 11
Q ss_pred CCCCCCCeEEEeee----eccCccchhhHHHHHhhcCCeEEEecc
Q 026036 196 TEGLPWPAFLMSWR----RRIGKEDETIFFTSCENAGLEVKHLGS 236 (244)
Q Consensus 196 ~~~~~~~~~~~~~~----~~~~~~~~~~~~~~l~~~Gf~v~~~~~ 236 (244)
+ .|-.... ......+.+++..+++..||++++...
T Consensus 204 -L-----lyh~~~~~~~~~~sveLs~eEi~~l~~~~GF~~~~~~~ 242 (270)
T PF07942_consen 204 -L-----LYHFEPMSIPNEMSVELSLEEIKELIEKLGFEIEKEES 242 (270)
T ss_pred -c-----cccCCCCCCCCCcccCCCHHHHHHHHHHCCCEEEEEEE
Confidence 1 1111110 001223468999999999999986544
|
This is thought to be expressed during meiosis and may be involved in the defence response to stressful conditions []. |
| >KOG1663 consensus O-methyltransferase [Secondary metabolites biosynthesis, transport and catabolism] | Back alignment and domain information |
|---|
Probab=98.29 E-value=7.5e-06 Score=64.44 Aligned_cols=106 Identities=15% Similarity=0.139 Sum_probs=76.0
Q ss_pred CcccCCeEEEeCCCCcHHHHHHHHhC--CCeEEEEeCChHHHHHHHHHhHHhcCCCCCcceEeeecCCCCC-----CCCC
Q 026036 74 EWIERRRCIELGSGTGALAIFLRKAM--NLDITTSDYNDQEIEDNIAYNSTTNGITPALPHIKHSWGDAFP-----IPNP 146 (244)
Q Consensus 74 ~~~~~~~VLdlG~G~G~~~~~~a~~~--~~~v~~~D~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~ 146 (244)
.....+++||||.=||..++..|... +.+|+++|++++.. +...+-.+..+...++..++....+.++ ...+
T Consensus 70 ~~~~ak~~lelGvfTGySaL~~Alalp~dGrv~a~eid~~~~-~~~~~~~k~agv~~KI~~i~g~a~esLd~l~~~~~~~ 148 (237)
T KOG1663|consen 70 RLLNAKRTLELGVFTGYSALAVALALPEDGRVVAIEIDADAY-EIGLELVKLAGVDHKITFIEGPALESLDELLADGESG 148 (237)
T ss_pred HHhCCceEEEEecccCHHHHHHHHhcCCCceEEEEecChHHH-HHhHHHHHhccccceeeeeecchhhhHHHHHhcCCCC
Confidence 34567899999998998888877766 77899999999876 6666666666776555555443333221 2356
Q ss_pred CccEEEEcccccCCcChHHHHHHHHHHHHhcCCCCceEee
Q 026036 147 DWDLILASDILLYVKQYSNLIKSLSVLLKSYKPKDSQVGH 186 (244)
Q Consensus 147 ~fD~I~~~~~l~~~~~~~~l~~~l~~~~~~lk~gG~~~~~ 186 (244)
.||+++. |.. ...-.....++.+++|+||.+++-
T Consensus 149 tfDfaFv-Dad-----K~nY~~y~e~~l~Llr~GGvi~~D 182 (237)
T KOG1663|consen 149 TFDFAFV-DAD-----KDNYSNYYERLLRLLRVGGVIVVD 182 (237)
T ss_pred ceeEEEE-ccc-----hHHHHHHHHHHHhhcccccEEEEe
Confidence 8999987 322 233348889999999999987775
|
|
| >PF08123 DOT1: Histone methylation protein DOT1 ; InterPro: IPR013110 The DOT1 domain regulates gene expression by methylating histone H3 [] | Back alignment and domain information |
|---|
Probab=98.27 E-value=8.8e-06 Score=64.15 Aligned_cols=108 Identities=16% Similarity=0.135 Sum_probs=58.4
Q ss_pred hccCcccCCeEEEeCCCCcHHHHHHHHhCCCe-EEEEeCChHHHHHHHHH-------hHHhcCCCCCcceEeeecCCCCC
Q 026036 71 HHREWIERRRCIELGSGTGALAIFLRKAMNLD-ITTSDYNDQEIEDNIAY-------NSTTNGITPALPHIKHSWGDAFP 142 (244)
Q Consensus 71 ~~~~~~~~~~VLdlG~G~G~~~~~~a~~~~~~-v~~~D~~~~~l~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~ 142 (244)
+...+.++...+|||||.|...+.+|...+++ .+|+++.+... +.++. .....+. ....+.+..++.+.
T Consensus 36 ~~~~l~~~dvF~DlGSG~G~~v~~aal~~~~~~~~GIEi~~~~~-~~a~~~~~~~~~~~~~~g~--~~~~v~l~~gdfl~ 112 (205)
T PF08123_consen 36 DELNLTPDDVFYDLGSGVGNVVFQAALQTGCKKSVGIEILPELH-DLAEELLEELKKRMKHYGK--RPGKVELIHGDFLD 112 (205)
T ss_dssp HHTT--TT-EEEEES-TTSHHHHHHHHHH--SEEEEEE-SHHHH-HHHHHHHHHHHHHHHHCTB-----EEEEECS-TTT
T ss_pred HHhCCCCCCEEEECCCCCCHHHHHHHHHcCCcEEEEEEechHHH-HHHHHHHHHHHHHHHHhhc--ccccceeeccCccc
Confidence 34456788899999999999987776655554 99999998632 33322 2222222 22344455544432
Q ss_pred CC-----CCCccEEEEcccccCCcChHHHHHHHHHHHHhcCCCCceEe
Q 026036 143 IP-----NPDWDLILASDILLYVKQYSNLIKSLSVLLKSYKPKDSQVG 185 (244)
Q Consensus 143 ~~-----~~~fD~I~~~~~l~~~~~~~~l~~~l~~~~~~lk~gG~~~~ 185 (244)
.. -...|+|++++..|. +++...|.++...||+|.+++.
T Consensus 113 ~~~~~~~~s~AdvVf~Nn~~F~----~~l~~~L~~~~~~lk~G~~IIs 156 (205)
T PF08123_consen 113 PDFVKDIWSDADVVFVNNTCFD----PDLNLALAELLLELKPGARIIS 156 (205)
T ss_dssp HHHHHHHGHC-SEEEE--TTT-----HHHHHHHHHHHTTS-TT-EEEE
T ss_pred cHhHhhhhcCCCEEEEeccccC----HHHHHHHHHHHhcCCCCCEEEE
Confidence 11 134699999998843 3556777888888998876543
|
H3 methylation by DOT1 has been shown to be required for the DNA damage checkpoint in yeast [].; GO: 0018024 histone-lysine N-methyltransferase activity; PDB: 4ER3_A 4ER6_A 4EQZ_A 1NW3_A 3UWP_A 4ER5_A 3QOX_A 3SX0_A 4ER7_A 3SR4_A .... |
| >KOG1709 consensus Guanidinoacetate methyltransferase and related proteins [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.26 E-value=1.4e-05 Score=62.28 Aligned_cols=105 Identities=15% Similarity=0.248 Sum_probs=78.4
Q ss_pred ccCCeEEEeCCCCcHHHHHHHHhCCCeEEEEeCChHHHHHHHHHhHHhcCCCCCcceEeeecCCCCC-CCCCCccEEEEc
Q 026036 76 IERRRCIELGSGTGALAIFLRKAMNLDITTSDYNDQEIEDNIAYNSTTNGITPALPHIKHSWGDAFP-IPNPDWDLILAS 154 (244)
Q Consensus 76 ~~~~~VLdlG~G~G~~~~~~a~~~~~~v~~~D~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~fD~I~~~ 154 (244)
.+|.+||++|-|.|+..-.+.+....+=+-++..++.+ +.++.+.... +.++......|.|.++ .+++.||-|+-
T Consensus 100 tkggrvLnVGFGMgIidT~iQe~~p~~H~IiE~hp~V~-krmr~~gw~e--k~nViil~g~WeDvl~~L~d~~FDGI~y- 175 (271)
T KOG1709|consen 100 TKGGRVLNVGFGMGIIDTFIQEAPPDEHWIIEAHPDVL-KRMRDWGWRE--KENVIILEGRWEDVLNTLPDKHFDGIYY- 175 (271)
T ss_pred hCCceEEEeccchHHHHHHHhhcCCcceEEEecCHHHH-HHHHhccccc--ccceEEEecchHhhhccccccCcceeEe-
Confidence 57889999999999999888766666677789999876 6666554322 2244556678887765 34668998875
Q ss_pred ccccCCcChHHHHHHHHHHHHhcCCCCceEee
Q 026036 155 DILLYVKQYSNLIKSLSVLLKSYKPKDSQVGH 186 (244)
Q Consensus 155 ~~l~~~~~~~~l~~~l~~~~~~lk~gG~~~~~ 186 (244)
|++ .+..+++..+.+.+.++|||+|++-..
T Consensus 176 DTy--~e~yEdl~~~hqh~~rLLkP~gv~Syf 205 (271)
T KOG1709|consen 176 DTY--SELYEDLRHFHQHVVRLLKPEGVFSYF 205 (271)
T ss_pred ech--hhHHHHHHHHHHHHhhhcCCCceEEEe
Confidence 442 245678889999999999999987665
|
|
| >PF09243 Rsm22: Mitochondrial small ribosomal subunit Rsm22; InterPro: IPR015324 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms | Back alignment and domain information |
|---|
Probab=98.25 E-value=1.8e-05 Score=65.46 Aligned_cols=109 Identities=18% Similarity=0.163 Sum_probs=65.1
Q ss_pred CcccCCeEEEeCCCCcHHHHHHHHhC--CCeEEEEeCChHHHHHHHHHhHHhcCCCCCcc-eEeeecCCCCCCCCCCccE
Q 026036 74 EWIERRRCIELGSGTGALAIFLRKAM--NLDITTSDYNDQEIEDNIAYNSTTNGITPALP-HIKHSWGDAFPIPNPDWDL 150 (244)
Q Consensus 74 ~~~~~~~VLdlG~G~G~~~~~~a~~~--~~~v~~~D~~~~~l~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~fD~ 150 (244)
+.+...+|||+|||.|....++.... -.+++++|.|+.|+ +..+.-... ....... .......+..+. ...|+
T Consensus 30 p~f~P~~vLD~GsGpGta~wAa~~~~~~~~~~~~vd~s~~~~-~l~~~l~~~-~~~~~~~~~~~~~~~~~~~~--~~~DL 105 (274)
T PF09243_consen 30 PDFRPRSVLDFGSGPGTALWAAREVWPSLKEYTCVDRSPEML-ELAKRLLRA-GPNNRNAEWRRVLYRDFLPF--PPDDL 105 (274)
T ss_pred cCCCCceEEEecCChHHHHHHHHHHhcCceeeeeecCCHHHH-HHHHHHHhc-ccccccchhhhhhhcccccC--CCCcE
Confidence 34566799999999998776665443 45799999999986 555443222 1111100 000001111111 23499
Q ss_pred EEEcccccCCcChHHHHHHHHHHHHhcCCCCceEeeccc
Q 026036 151 ILASDILLYVKQYSNLIKSLSVLLKSYKPKDSQVGHLTK 189 (244)
Q Consensus 151 I~~~~~l~~~~~~~~l~~~l~~~~~~lk~gG~~~~~~~~ 189 (244)
|+++++|-.-.. ....+.++.+-+.+++ .++++.++
T Consensus 106 vi~s~~L~EL~~-~~r~~lv~~LW~~~~~--~LVlVEpG 141 (274)
T PF09243_consen 106 VIASYVLNELPS-AARAELVRSLWNKTAP--VLVLVEPG 141 (274)
T ss_pred EEEehhhhcCCc-hHHHHHHHHHHHhccC--cEEEEcCC
Confidence 999999944444 6666777777666654 67777333
|
The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. Rsm22 has been identified as a mitochondrial small ribosomal subunit [] and is a methyltransferase. In Schizosaccharomyces pombe (Fission yeast), Rsm22 is tandemly fused to Cox11 (a factor required for copper insertion into cytochrome oxidase) and the two proteins are proteolytically cleaved after import into the mitochondria []. This entry consists of mitochondrial Rsm22 and homologous sequences from bacteria.; GO: 0008168 methyltransferase activity, 0006412 translation |
| >COG0030 KsgA Dimethyladenosine transferase (rRNA methylation) [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=98.23 E-value=1.7e-05 Score=64.33 Aligned_cols=84 Identities=15% Similarity=0.160 Sum_probs=60.8
Q ss_pred HHHHhhccCcccCCeEEEeCCCCcHHHHHHHHhCCCeEEEEeCChHHHHHHHHHhHHhcCCCCCcceEeeecCCCCCCCC
Q 026036 66 AEWLMHHREWIERRRCIELGSGTGALAIFLRKAMNLDITTSDYNDQEIEDNIAYNSTTNGITPALPHIKHSWGDAFPIPN 145 (244)
Q Consensus 66 ~~~~~~~~~~~~~~~VLdlG~G~G~~~~~~a~~~~~~v~~~D~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 145 (244)
.+.+.......++..|||||+|.|.++..+++. +.+|+++++++.++ +.+++.... ...+.+.++|.+...-
T Consensus 19 ~~kIv~~a~~~~~d~VlEIGpG~GaLT~~Ll~~-~~~v~aiEiD~~l~-~~L~~~~~~------~~n~~vi~~DaLk~d~ 90 (259)
T COG0030 19 IDKIVEAANISPGDNVLEIGPGLGALTEPLLER-AARVTAIEIDRRLA-EVLKERFAP------YDNLTVINGDALKFDF 90 (259)
T ss_pred HHHHHHhcCCCCCCeEEEECCCCCHHHHHHHhh-cCeEEEEEeCHHHH-HHHHHhccc------ccceEEEeCchhcCcc
Confidence 555555566667889999999999999999987 77799999999876 666554331 1234555666655443
Q ss_pred C---CccEEEEcccc
Q 026036 146 P---DWDLILASDIL 157 (244)
Q Consensus 146 ~---~fD~I~~~~~l 157 (244)
. .++.|++|-+.
T Consensus 91 ~~l~~~~~vVaNlPY 105 (259)
T COG0030 91 PSLAQPYKVVANLPY 105 (259)
T ss_pred hhhcCCCEEEEcCCC
Confidence 3 67899998775
|
|
| >COG0144 Sun tRNA and rRNA cytosine-C5-methylases [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=98.19 E-value=8.4e-05 Score=63.72 Aligned_cols=112 Identities=15% Similarity=0.153 Sum_probs=73.8
Q ss_pred cCcccCCeEEEeCCCCcHHHHHHHHhC---CCeEEEEeCChHHHHHHHHHhHHhcCCCCCcceEeeecCCCCC--CCCCC
Q 026036 73 REWIERRRCIELGSGTGALAIFLRKAM---NLDITTSDYNDQEIEDNIAYNSTTNGITPALPHIKHSWGDAFP--IPNPD 147 (244)
Q Consensus 73 ~~~~~~~~VLdlG~G~G~~~~~~a~~~---~~~v~~~D~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~ 147 (244)
..+.+|.+|||++++-|.=+.++++.. +..|+++|.++.-+ ..++.|+...++.+ +..+..+-..... ....+
T Consensus 152 L~p~pge~VlD~cAAPGGKTthla~~~~~~~~iV~A~D~~~~Rl-~~l~~nl~RlG~~n-v~~~~~d~~~~~~~~~~~~~ 229 (355)
T COG0144 152 LDPKPGERVLDLCAAPGGKTTHLAELMENEGAIVVAVDVSPKRL-KRLRENLKRLGVRN-VIVVNKDARRLAELLPGGEK 229 (355)
T ss_pred cCCCCcCEEEEECCCCCCHHHHHHHhcCCCCceEEEEcCCHHHH-HHHHHHHHHcCCCc-eEEEecccccccccccccCc
Confidence 456688999999999998888888776 35579999999876 78888888888743 2222222211111 11225
Q ss_pred ccEEEEc------ccccCC------cC------hHH-HHHHHHHHHHhcCCCCceEee
Q 026036 148 WDLILAS------DILLYV------KQ------YSN-LIKSLSVLLKSYKPKDSQVGH 186 (244)
Q Consensus 148 fD~I~~~------~~l~~~------~~------~~~-l~~~l~~~~~~lk~gG~~~~~ 186 (244)
||.|+.= .++..+ .. ... ..+.|....+.+||||+++.+
T Consensus 230 fD~iLlDaPCSg~G~irr~Pd~~~~~~~~~i~~l~~lQ~~iL~~a~~~lk~GG~LVYS 287 (355)
T COG0144 230 FDRILLDAPCSGTGVIRRDPDVKWRRTPEDIAELAKLQKEILAAALKLLKPGGVLVYS 287 (355)
T ss_pred CcEEEECCCCCCCcccccCccccccCCHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEE
Confidence 9999871 122111 01 111 236778899999999998877
|
|
| >PRK00536 speE spermidine synthase; Provisional | Back alignment and domain information |
|---|
Probab=98.18 E-value=1.6e-05 Score=64.86 Aligned_cols=96 Identities=14% Similarity=0.046 Sum_probs=65.5
Q ss_pred cCCeEEEeCCCCcHHHHHHHHhCCCeEEEEeCChHHHHHHHHHhHHhc--CC-CCCcceEeeecCCCCCCCCCCccEEEE
Q 026036 77 ERRRCIELGSGTGALAIFLRKAMNLDITTSDYNDQEIEDNIAYNSTTN--GI-TPALPHIKHSWGDAFPIPNPDWDLILA 153 (244)
Q Consensus 77 ~~~~VLdlG~G~G~~~~~~a~~~~~~v~~~D~~~~~l~~~~~~~~~~~--~~-~~~~~~~~~~~~~~~~~~~~~fD~I~~ 153 (244)
..++||=+|.|-|.....+.+. ..+|+.+|++++++ +.+++..... .. .+++..+. + ......++||+||+
T Consensus 72 ~pk~VLIiGGGDGg~~REvLkh-~~~v~mVeID~~Vv-~~~k~~lP~~~~~~~DpRv~l~~--~--~~~~~~~~fDVIIv 145 (262)
T PRK00536 72 ELKEVLIVDGFDLELAHQLFKY-DTHVDFVQADEKIL-DSFISFFPHFHEVKNNKNFTHAK--Q--LLDLDIKKYDLIIC 145 (262)
T ss_pred CCCeEEEEcCCchHHHHHHHCc-CCeeEEEECCHHHH-HHHHHHCHHHHHhhcCCCEEEee--h--hhhccCCcCCEEEE
Confidence 4579999999999999999876 45999999999876 7777632211 11 12333322 1 11112358999996
Q ss_pred cccccCCcChHHHHHHHHHHHHhcCCCCceEee
Q 026036 154 SDILLYVKQYSNLIKSLSVLLKSYKPKDSQVGH 186 (244)
Q Consensus 154 ~~~l~~~~~~~~l~~~l~~~~~~lk~gG~~~~~ 186 (244)
|.+|. + ...+.+.+.|+|||.++..
T Consensus 146 -Ds~~~----~---~fy~~~~~~L~~~Gi~v~Q 170 (262)
T PRK00536 146 -LQEPD----I---HKIDGLKRMLKEDGVFISV 170 (262)
T ss_pred -cCCCC----h---HHHHHHHHhcCCCcEEEEC
Confidence 65522 2 5667899999999987775
|
|
| >PF04816 DUF633: Family of unknown function (DUF633) ; InterPro: IPR006901 This is a family of uncharacterised bacterial proteins | Back alignment and domain information |
|---|
Probab=98.18 E-value=4.6e-05 Score=60.10 Aligned_cols=126 Identities=17% Similarity=0.203 Sum_probs=78.6
Q ss_pred EEEeCCCCcHHHHHHHHhC-CCeEEEEeCChHHHHHHHHHhHHhcCCCCCcceEeeecCCCCCC-CCC-CccEEEEcccc
Q 026036 81 CIELGSGTGALAIFLRKAM-NLDITTSDYNDQEIEDNIAYNSTTNGITPALPHIKHSWGDAFPI-PNP-DWDLILASDIL 157 (244)
Q Consensus 81 VLdlG~G~G~~~~~~a~~~-~~~v~~~D~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~-~fD~I~~~~~l 157 (244)
|.|+||--|.+++.+.+.+ ..+++++|+++..+ +.++.++...++..++ .+..++.+.. ..+ ..|+|+.+.+=
T Consensus 1 vaDIGtDHgyLpi~L~~~~~~~~~ia~DI~~gpL-~~A~~~i~~~~l~~~i---~~rlgdGL~~l~~~e~~d~ivIAGMG 76 (205)
T PF04816_consen 1 VADIGTDHGYLPIYLLKNGKAPKAIAVDINPGPL-EKAKENIAKYGLEDRI---EVRLGDGLEVLKPGEDVDTIVIAGMG 76 (205)
T ss_dssp EEEET-STTHHHHHHHHTTSEEEEEEEESSHHHH-HHHHHHHHHTT-TTTE---EEEE-SGGGG--GGG---EEEEEEE-
T ss_pred CceeccchhHHHHHHHhcCCCCEEEEEeCCHHHH-HHHHHHHHHcCCcccE---EEEECCcccccCCCCCCCEEEEecCC
Confidence 6899999999999999887 45699999999987 8899999988876544 4445554432 222 37888886652
Q ss_pred cCCcChHHHHHHHHHHHHhcCCCCceEeecccccCCCCCCCCCCCeEEEeeeeccCccchhhHHHHHhhcCCeEEEe---
Q 026036 158 LYVKQYSNLIKSLSVLLKSYKPKDSQVGHLTKNEQGEGTEGLPWPAFLMSWRRRIGKEDETIFFTSCENAGLEVKHL--- 234 (244)
Q Consensus 158 ~~~~~~~~l~~~l~~~~~~lk~gG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gf~v~~~--- 234 (244)
.....+.+.+....++...+|++. |... ...+.+.+.++||++.+-
T Consensus 77 -----G~lI~~ILe~~~~~~~~~~~lILq-----------------------P~~~---~~~LR~~L~~~gf~I~~E~lv 125 (205)
T PF04816_consen 77 -----GELIIEILEAGPEKLSSAKRLILQ-----------------------PNTH---AYELRRWLYENGFEIIDEDLV 125 (205)
T ss_dssp -----HHHHHHHHHHTGGGGTT--EEEEE-----------------------ESS----HHHHHHHHHHTTEEEEEEEEE
T ss_pred -----HHHHHHHHHhhHHHhccCCeEEEe-----------------------CCCC---hHHHHHHHHHCCCEEEEeEEE
Confidence 233345555554444443333332 2222 368889999999987643
Q ss_pred --ccEEEEE
Q 026036 235 --GSRVYCI 241 (244)
Q Consensus 235 --~~~~~~~ 241 (244)
..+.|.|
T Consensus 126 ~e~~~~YeI 134 (205)
T PF04816_consen 126 EENGRFYEI 134 (205)
T ss_dssp EETTEEEEE
T ss_pred eECCEEEEE
Confidence 3555544
|
; GO: 0016429 tRNA (adenine-N1-)-methyltransferase activity; PDB: 3LEC_A 3KU1_G 3KR9_A 3GNL_B. |
| >COG0116 Predicted N6-adenine-specific DNA methylase [DNA replication, recombination, and repair] | Back alignment and domain information |
|---|
Probab=98.16 E-value=5.3e-05 Score=64.47 Aligned_cols=94 Identities=14% Similarity=0.193 Sum_probs=70.9
Q ss_pred HHHHHHHHhhccCcccCCeEEEeCCCCcHHHHHHHHhCC---------------------------------C-------
Q 026036 62 TFSFAEWLMHHREWIERRRCIELGSGTGALAIFLRKAMN---------------------------------L------- 101 (244)
Q Consensus 62 ~~~l~~~~~~~~~~~~~~~VLdlG~G~G~~~~~~a~~~~---------------------------------~------- 101 (244)
-+.||.-+.......++..++|--||+|.+.+.+|.... +
T Consensus 176 ketLAaAil~lagw~~~~pl~DPmCGSGTi~IEAAl~~~niAPg~~R~~~f~~w~~~~~~lw~~~~~ea~~~a~~~~~~~ 255 (381)
T COG0116 176 KETLAAAILLLAGWKPDEPLLDPMCGSGTILIEAALIAANIAPGLNRRFGFEFWDWFDKDLWDKLREEAEERARRGKELP 255 (381)
T ss_pred hHHHHHHHHHHcCCCCCCccccCCCCccHHHHHHHHhccccCCccccccchhhhhhccHHHHHHHHHHHHHHHhhcCccc
Confidence 567777777777777778999999999999998887641 1
Q ss_pred eEEEEeCChHHHHHHHHHhHHhcCCCCCcceEeeecCCCCCCCCCCccEEEEcccc
Q 026036 102 DITTSDYNDQEIEDNIAYNSTTNGITPALPHIKHSWGDAFPIPNPDWDLILASDIL 157 (244)
Q Consensus 102 ~v~~~D~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fD~I~~~~~l 157 (244)
.++|+|+++.++ +.++.|+...++.+.+.+...+..+..+ ....+|+||||.+.
T Consensus 256 ~~~G~Did~r~i-~~Ak~NA~~AGv~d~I~f~~~d~~~l~~-~~~~~gvvI~NPPY 309 (381)
T COG0116 256 IIYGSDIDPRHI-EGAKANARAAGVGDLIEFKQADATDLKE-PLEEYGVVISNPPY 309 (381)
T ss_pred eEEEecCCHHHH-HHHHHHHHhcCCCceEEEEEcchhhCCC-CCCcCCEEEeCCCc
Confidence 377999999998 8999999999886555554444432211 11589999998884
|
|
| >COG0421 SpeE Spermidine synthase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.13 E-value=2.9e-05 Score=64.14 Aligned_cols=105 Identities=14% Similarity=0.078 Sum_probs=69.9
Q ss_pred CeEEEeCCCCcHHHHHHHHhC-CCeEEEEeCChHHHHHHHHHhHHhcCCCCCcceEeeecCCCCC---CCCCCccEEEEc
Q 026036 79 RRCIELGSGTGALAIFLRKAM-NLDITTSDYNDQEIEDNIAYNSTTNGITPALPHIKHSWGDAFP---IPNPDWDLILAS 154 (244)
Q Consensus 79 ~~VLdlG~G~G~~~~~~a~~~-~~~v~~~D~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~fD~I~~~ 154 (244)
++||-||.|.|..+..+.+.. -.+++.+|+++..+ +.+++..........-+.+.+..+|... ....+||+|++
T Consensus 78 k~VLiiGgGdG~tlRevlkh~~ve~i~~VEID~~Vi-~~ar~~l~~~~~~~~dpRv~i~i~Dg~~~v~~~~~~fDvIi~- 155 (282)
T COG0421 78 KRVLIIGGGDGGTLREVLKHLPVERITMVEIDPAVI-ELARKYLPEPSGGADDPRVEIIIDDGVEFLRDCEEKFDVIIV- 155 (282)
T ss_pred CeEEEECCCccHHHHHHHhcCCcceEEEEEcCHHHH-HHHHHhccCcccccCCCceEEEeccHHHHHHhCCCcCCEEEE-
Confidence 599999999999999998776 47899999999876 7777654432210011233443444322 22347999987
Q ss_pred ccccCCcCh-HH--HHHHHHHHHHhcCCCCceEee
Q 026036 155 DILLYVKQY-SN--LIKSLSVLLKSYKPKDSQVGH 186 (244)
Q Consensus 155 ~~l~~~~~~-~~--l~~~l~~~~~~lk~gG~~~~~ 186 (244)
|+. ..... +. -...++.+.+.|+++|.++..
T Consensus 156 D~t-dp~gp~~~Lft~eFy~~~~~~L~~~Gi~v~q 189 (282)
T COG0421 156 DST-DPVGPAEALFTEEFYEGCRRALKEDGIFVAQ 189 (282)
T ss_pred cCC-CCCCcccccCCHHHHHHHHHhcCCCcEEEEe
Confidence 554 32111 11 127889999999999977665
|
|
| >KOG1269 consensus SAM-dependent methyltransferases [Lipid transport and metabolism; General function prediction only] | Back alignment and domain information |
|---|
Probab=98.12 E-value=6.3e-06 Score=70.32 Aligned_cols=108 Identities=11% Similarity=0.121 Sum_probs=77.2
Q ss_pred CcccCCeEEEeCCCCcHHHHHHHHhCCCeEEEEeCChHHHHHHHHHhHHhcCCCCCcceEeeecCCCCCCCCCCccEEEE
Q 026036 74 EWIERRRCIELGSGTGALAIFLRKAMNLDITTSDYNDQEIEDNIAYNSTTNGITPALPHIKHSWGDAFPIPNPDWDLILA 153 (244)
Q Consensus 74 ~~~~~~~VLdlG~G~G~~~~~~a~~~~~~v~~~D~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fD~I~~ 153 (244)
...++.+++|+|||.|.+...++....++++++|.++..+...-..+. ...+..+... .+.|.-..++++..||.+.+
T Consensus 107 ~~~~~~~~~~~~~g~~~~~~~i~~f~~~~~~Gl~~n~~e~~~~~~~~~-~~~l~~k~~~-~~~~~~~~~fedn~fd~v~~ 184 (364)
T KOG1269|consen 107 SCFPGSKVLDVGTGVGGPSRYIAVFKKAGVVGLDNNAYEAFRANELAK-KAYLDNKCNF-VVADFGKMPFEDNTFDGVRF 184 (364)
T ss_pred cCcccccccccCcCcCchhHHHHHhccCCccCCCcCHHHHHHHHHHHH-HHHhhhhcce-ehhhhhcCCCCccccCcEEE
Confidence 345677999999999999999988778999999999865422211111 1122222222 34444445777889999999
Q ss_pred cccccCCcChHHHHHHHHHHHHhcCCCCceEee
Q 026036 154 SDILLYVKQYSNLIKSLSVLLKSYKPKDSQVGH 186 (244)
Q Consensus 154 ~~~l~~~~~~~~l~~~l~~~~~~lk~gG~~~~~ 186 (244)
.++..+ .++....++++.+++||||.++..
T Consensus 185 ld~~~~---~~~~~~~y~Ei~rv~kpGG~~i~~ 214 (364)
T KOG1269|consen 185 LEVVCH---APDLEKVYAEIYRVLKPGGLFIVK 214 (364)
T ss_pred Eeeccc---CCcHHHHHHHHhcccCCCceEEeH
Confidence 999933 456669999999999999987765
|
|
| >COG4076 Predicted RNA methylase [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.11 E-value=6.4e-06 Score=62.72 Aligned_cols=99 Identities=14% Similarity=0.168 Sum_probs=69.7
Q ss_pred CeEEEeCCCCcHHHHHHHHhCCCeEEEEeCChHHHHHHHHHhHHhcCCCCCcceEeeecCCCCCCCCCCccEEEEccccc
Q 026036 79 RRCIELGSGTGALAIFLRKAMNLDITTSDYNDQEIEDNIAYNSTTNGITPALPHIKHSWGDAFPIPNPDWDLILASDILL 158 (244)
Q Consensus 79 ~~VLdlG~G~G~~~~~~a~~~~~~v~~~D~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fD~I~~~~~l~ 158 (244)
..+-|||+|+|.++..+|.. ..+|++++.++.-. +.+.+|+..++. ..++...+|.....-+..|+|+|- ++
T Consensus 34 d~~~DLGaGsGiLs~~Aa~~-A~rViAiE~dPk~a-~~a~eN~~v~g~----~n~evv~gDA~~y~fe~ADvvicE-ml- 105 (252)
T COG4076 34 DTFADLGAGSGILSVVAAHA-AERVIAIEKDPKRA-RLAEENLHVPGD----VNWEVVVGDARDYDFENADVVICE-ML- 105 (252)
T ss_pred hceeeccCCcchHHHHHHhh-hceEEEEecCcHHH-HHhhhcCCCCCC----cceEEEecccccccccccceeHHH-Hh-
Confidence 68999999999999988876 88999999999854 778888877666 234444555544433567999882 22
Q ss_pred CC-cChHHHHHHHHHHHHhcCCCCceEe
Q 026036 159 YV-KQYSNLIKSLSVLLKSYKPKDSQVG 185 (244)
Q Consensus 159 ~~-~~~~~l~~~l~~~~~~lk~gG~~~~ 185 (244)
.. .-.+..+..+..+...|+-.+.++=
T Consensus 106 DTaLi~E~qVpV~n~vleFLr~d~tiiP 133 (252)
T COG4076 106 DTALIEEKQVPVINAVLEFLRYDPTIIP 133 (252)
T ss_pred hHHhhcccccHHHHHHHHHhhcCCcccc
Confidence 11 1223445777777888888776543
|
|
| >KOG2915 consensus tRNA(1-methyladenosine) methyltransferase, subunit GCD14 [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=98.09 E-value=9.5e-05 Score=59.67 Aligned_cols=104 Identities=15% Similarity=0.211 Sum_probs=71.0
Q ss_pred hhccCcccCCeEEEeCCCCcHHHHHHHHhC--CCeEEEEeCChHHHHHHHHHhHHhcCCCCCcceEeeecCC-CCCCCCC
Q 026036 70 MHHREWIERRRCIELGSGTGALAIFLRKAM--NLDITTSDYNDQEIEDNIAYNSTTNGITPALPHIKHSWGD-AFPIPNP 146 (244)
Q Consensus 70 ~~~~~~~~~~~VLdlG~G~G~~~~~~a~~~--~~~v~~~D~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~ 146 (244)
.......+|.+|||-|+|+|.++-++++.. ..+++..|..+.-. +.+.+.-+..++...+....-|... .....+.
T Consensus 98 ~~~L~i~PGsvV~EsGTGSGSlShaiaraV~ptGhl~tfefH~~Ra-~ka~eeFr~hgi~~~vt~~hrDVc~~GF~~ks~ 176 (314)
T KOG2915|consen 98 LSMLEIRPGSVVLESGTGSGSLSHAIARAVAPTGHLYTFEFHETRA-EKALEEFREHGIGDNVTVTHRDVCGSGFLIKSL 176 (314)
T ss_pred HHHhcCCCCCEEEecCCCcchHHHHHHHhhCcCcceEEEEecHHHH-HHHHHHHHHhCCCcceEEEEeecccCCcccccc
Confidence 334567899999999999999999998876 46799999977543 4444445556676666665555543 2223345
Q ss_pred CccEEEEcccccCCcChHHHHHHHHHHHHhcCCCCc
Q 026036 147 DWDLILASDILLYVKQYSNLIKSLSVLLKSYKPKDS 182 (244)
Q Consensus 147 ~fD~I~~~~~l~~~~~~~~l~~~l~~~~~~lk~gG~ 182 (244)
.+|.|+. |+ ++...++-.++++||.+|.
T Consensus 177 ~aDaVFL-Dl-------PaPw~AiPha~~~lk~~g~ 204 (314)
T KOG2915|consen 177 KADAVFL-DL-------PAPWEAIPHAAKILKDEGG 204 (314)
T ss_pred ccceEEE-cC-------CChhhhhhhhHHHhhhcCc
Confidence 7888775 33 2334666677888888774
|
|
| >TIGR03439 methyl_EasF probable methyltransferase domain, EasF family | Back alignment and domain information |
|---|
Probab=98.06 E-value=5e-05 Score=63.86 Aligned_cols=109 Identities=17% Similarity=0.105 Sum_probs=67.1
Q ss_pred ccCCeEEEeCCCCcHHHHHHHHhC-----CCeEEEEeCChHHHHHHHHHhHHhcCCCC-CcceEeeecCCCCC---C--C
Q 026036 76 IERRRCIELGSGTGALAIFLRKAM-----NLDITTSDYNDQEIEDNIAYNSTTNGITP-ALPHIKHSWGDAFP---I--P 144 (244)
Q Consensus 76 ~~~~~VLdlG~G~G~~~~~~a~~~-----~~~v~~~D~~~~~l~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~---~--~ 144 (244)
.++..++|+|||+|.=...+.... ..+++++|+|.+++ +.+..++.....+. .+.-+..+..+.+. . .
T Consensus 75 ~~~~~lIELGsG~~~Kt~~LL~aL~~~~~~~~Y~plDIS~~~L-~~a~~~L~~~~~p~l~v~~l~gdy~~~l~~l~~~~~ 153 (319)
T TIGR03439 75 PSGSMLVELGSGNLRKVGILLEALERQKKSVDYYALDVSRSEL-QRTLAELPLGNFSHVRCAGLLGTYDDGLAWLKRPEN 153 (319)
T ss_pred CCCCEEEEECCCchHHHHHHHHHHHhcCCCceEEEEECCHHHH-HHHHHhhhhccCCCeEEEEEEecHHHHHhhcccccc
Confidence 366789999999997654433322 46799999999988 44444444222211 11112222222221 1 1
Q ss_pred CCCccEEEEcc-cccCCcChHHHHHHHHHHHH-hcCCCCceEee
Q 026036 145 NPDWDLILASD-ILLYVKQYSNLIKSLSVLLK-SYKPKDSQVGH 186 (244)
Q Consensus 145 ~~~fD~I~~~~-~l~~~~~~~~l~~~l~~~~~-~lk~gG~~~~~ 186 (244)
.....+++.-. ++ .....+.....|+.+++ .|+|||.+++.
T Consensus 154 ~~~~r~~~flGSsi-GNf~~~ea~~fL~~~~~~~l~~~d~lLiG 196 (319)
T TIGR03439 154 RSRPTTILWLGSSI-GNFSRPEAAAFLAGFLATALSPSDSFLIG 196 (319)
T ss_pred cCCccEEEEeCccc-cCCCHHHHHHHHHHHHHhhCCCCCEEEEe
Confidence 22356666654 44 44556677899999999 99999999887
|
This model represents an uncharacterized domain of about 300 amino acids with homology to S-adenosylmethionine-dependent methyltransferases. Proteins with this domain are exclusively fungal. A few, such as EasF from Neotyphodium lolii, are associated with the biosynthesis of ergot alkaloids, a class of fungal secondary metabolites. EasF may, in fact, be the AdoMet:dimethylallyltryptophan N-methyltransferase, the enzyme that follows tryptophan dimethylallyltransferase (DMATS) in ergot alkaloid biosynthesis. Several other members of this family, including mug158 (meiotically up-regulated gene 158 protein) from Schizosaccharomyces pombe, contain an additional uncharacterized domain DUF323 (pfam03781). |
| >PRK00050 16S rRNA m(4)C1402 methyltranserfase; Provisional | Back alignment and domain information |
|---|
Probab=98.06 E-value=8.3e-06 Score=67.74 Aligned_cols=52 Identities=8% Similarity=0.008 Sum_probs=41.7
Q ss_pred HhhccCcccCCeEEEeCCCCcHHHHHHHHhC--CCeEEEEeCChHHHHHHHHHhH
Q 026036 69 LMHHREWIERRRCIELGSGTGALAIFLRKAM--NLDITTSDYNDQEIEDNIAYNS 121 (244)
Q Consensus 69 ~~~~~~~~~~~~VLdlG~G~G~~~~~~a~~~--~~~v~~~D~~~~~l~~~~~~~~ 121 (244)
+++...+.++..+||.+||.|..+..+++.. ..+|+|+|.+++++ +.++++.
T Consensus 11 vl~~L~~~pg~~vlD~TlG~GGhS~~il~~~~~~g~VigiD~D~~al-~~ak~~L 64 (296)
T PRK00050 11 VVDALAIKPDGIYVDGTFGGGGHSRAILERLGPKGRLIAIDRDPDAI-AAAKDRL 64 (296)
T ss_pred HHHhhCCCCCCEEEEeCcCChHHHHHHHHhCCCCCEEEEEcCCHHHH-HHHHHhh
Confidence 3334445577899999999999999999886 37899999999987 6666554
|
|
| >COG0500 SmtA SAM-dependent methyltransferases [Secondary metabolites biosynthesis, transport, and catabolism / General function prediction only] | Back alignment and domain information |
|---|
Probab=98.02 E-value=0.00012 Score=54.22 Aligned_cols=102 Identities=21% Similarity=0.272 Sum_probs=63.5
Q ss_pred EEEeCCCCcHHHHHHHHhCC--CeEEEEeCChHHHHHHHHHhHHhcCCCCCcceEeeecCC-CCCCCC-CCccEEEEccc
Q 026036 81 CIELGSGTGALAIFLRKAMN--LDITTSDYNDQEIEDNIAYNSTTNGITPALPHIKHSWGD-AFPIPN-PDWDLILASDI 156 (244)
Q Consensus 81 VLdlG~G~G~~~~~~a~~~~--~~v~~~D~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~-~~fD~I~~~~~ 156 (244)
++|+|||+|... .++.... ..++++|+++.++ ...+........ ..+.....+... ..++.. ..||++ +...
T Consensus 52 ~ld~~~g~g~~~-~~~~~~~~~~~~~~~d~~~~~~-~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~d~~-~~~~ 127 (257)
T COG0500 52 VLDIGCGTGRLA-LLARLGGRGAYVVGVDLSPEML-ALARARAEGAGL-GLVDFVVADALGGVLPFEDSASFDLV-ISLL 127 (257)
T ss_pred eEEecCCcCHHH-HHHHhCCCCceEEEEeCCHHHH-HHHHhhhhhcCC-CceEEEEeccccCCCCCCCCCceeEE-eeee
Confidence 999999999876 3333333 4899999999876 443332221111 002233333333 245544 479999 5555
Q ss_pred ccCCcChHHHHHHHHHHHHhcCCCCceEeeccc
Q 026036 157 LLYVKQYSNLIKSLSVLLKSYKPKDSQVGHLTK 189 (244)
Q Consensus 157 l~~~~~~~~l~~~l~~~~~~lk~gG~~~~~~~~ 189 (244)
..++.. ....+.++.+.++|+|.+++....
T Consensus 128 ~~~~~~---~~~~~~~~~~~l~~~g~~~~~~~~ 157 (257)
T COG0500 128 VLHLLP---PAKALRELLRVLKPGGRLVLSDLL 157 (257)
T ss_pred ehhcCC---HHHHHHHHHHhcCCCcEEEEEecc
Confidence 434433 558899999999999998887443
|
|
| >PF01564 Spermine_synth: Spermine/spermidine synthase; InterPro: IPR001045 Synonym(s): Spermidine aminopropyltransferase A group of polyamine biosynthetic enzymes involved in the fifth (last) step in the biosynthesis of spermidine from arginine and methionine which includes; spermidine synthase (2 | Back alignment and domain information |
|---|
Probab=98.02 E-value=5.9e-06 Score=67.20 Aligned_cols=107 Identities=17% Similarity=0.169 Sum_probs=65.9
Q ss_pred cCCeEEEeCCCCcHHHHHHHHhC-CCeEEEEeCChHHHHHHHHHhHHhcCCCCCcceEeeecCCC---CCCCCC-CccEE
Q 026036 77 ERRRCIELGSGTGALAIFLRKAM-NLDITTSDYNDQEIEDNIAYNSTTNGITPALPHIKHSWGDA---FPIPNP-DWDLI 151 (244)
Q Consensus 77 ~~~~VLdlG~G~G~~~~~~a~~~-~~~v~~~D~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~-~fD~I 151 (244)
+.++||=||.|.|.....+.+.. ..+|+++|+++.++ +.+++..........-+.+.+..+|. +..... +||+|
T Consensus 76 ~p~~VLiiGgG~G~~~~ell~~~~~~~i~~VEiD~~Vv-~~a~~~f~~~~~~~~d~r~~i~~~Dg~~~l~~~~~~~yDvI 154 (246)
T PF01564_consen 76 NPKRVLIIGGGDGGTARELLKHPPVESITVVEIDPEVV-ELARKYFPEFSEGLDDPRVRIIIGDGRKFLKETQEEKYDVI 154 (246)
T ss_dssp ST-EEEEEESTTSHHHHHHTTSTT-SEEEEEES-HHHH-HHHHHHTHHHHTTGGSTTEEEEESTHHHHHHTSSST-EEEE
T ss_pred CcCceEEEcCCChhhhhhhhhcCCcceEEEEecChHHH-HHHHHhchhhccccCCCceEEEEhhhHHHHHhccCCcccEE
Confidence 56799999999999998887654 46899999999876 77776544322110111233333333 222234 89999
Q ss_pred EEcccccCCcChHH---HHHHHHHHHHhcCCCCceEee
Q 026036 152 LASDILLYVKQYSN---LIKSLSVLLKSYKPKDSQVGH 186 (244)
Q Consensus 152 ~~~~~l~~~~~~~~---l~~~l~~~~~~lk~gG~~~~~ 186 (244)
+. |.. ....... -...++.+.+.|+|+|.+++.
T Consensus 155 i~-D~~-dp~~~~~~l~t~ef~~~~~~~L~~~Gv~v~~ 190 (246)
T PF01564_consen 155 IV-DLT-DPDGPAPNLFTREFYQLCKRRLKPDGVLVLQ 190 (246)
T ss_dssp EE-ESS-STTSCGGGGSSHHHHHHHHHHEEEEEEEEEE
T ss_pred EE-eCC-CCCCCcccccCHHHHHHHHhhcCCCcEEEEE
Confidence 87 443 2111111 137889999999999977664
|
5.1.16 from EC), spermine synthase (2.5.1.22 from EC) and putrescine N-methyltransferase (2.1.1.53 from EC) []. The Thermotoga maritima spermidine synthase monomer consists of two domains: an N-terminal domain composed of six beta-strands, and a Rossmann-like C- terminal domain []. The larger C-terminal catalytic core domain consists of a seven-stranded beta-sheet flanked by nine alpha helices. This domain resembles a topology observed in a number of nucleotide and dinucleotide-binding enzymes, and in S-adenosyl-L-methionine (AdoMet)- dependent methyltransferase (MTases) [].; GO: 0003824 catalytic activity; PDB: 2E5W_C 2ZSU_E 2O0L_B 2O05_B 2O06_B 2O07_B 3RW9_B 2PWP_A 2HTE_B 3RIE_B .... |
| >PRK01544 bifunctional N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase/tRNA (m7G46) methyltransferase; Reviewed | Back alignment and domain information |
|---|
Probab=97.97 E-value=8.7e-05 Score=66.62 Aligned_cols=108 Identities=18% Similarity=0.101 Sum_probs=69.0
Q ss_pred cCCeEEEeCCCCcHHHHHHHHhC-CCeEEEEeCChHHHHHHHHHhHHhcCCCCCcceEeeecCCC-CCCCCCCccEEEEc
Q 026036 77 ERRRCIELGSGTGALAIFLRKAM-NLDITTSDYNDQEIEDNIAYNSTTNGITPALPHIKHSWGDA-FPIPNPDWDLILAS 154 (244)
Q Consensus 77 ~~~~VLdlG~G~G~~~~~~a~~~-~~~v~~~D~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~fD~I~~~ 154 (244)
.+..+||||||.|.+...+|... ...++|+|+....+...+ +.+...++. ++..+..+.... ..++++++|.|+.+
T Consensus 347 ~~p~~lEIG~G~G~~~~~~A~~~p~~~~iGiE~~~~~~~~~~-~~~~~~~l~-N~~~~~~~~~~~~~~~~~~sv~~i~i~ 424 (506)
T PRK01544 347 KRKVFLEIGFGMGEHFINQAKMNPDALFIGVEVYLNGVANVL-KLAGEQNIT-NFLLFPNNLDLILNDLPNNSLDGIYIL 424 (506)
T ss_pred CCceEEEECCCchHHHHHHHHhCCCCCEEEEEeeHHHHHHHH-HHHHHcCCC-eEEEEcCCHHHHHHhcCcccccEEEEE
Confidence 46689999999999999999887 567999999987663333 334444442 122221111100 11345679988886
Q ss_pred ccccCCc--ChH---HHHHHHHHHHHhcCCCCceEee
Q 026036 155 DILLYVK--QYS---NLIKSLSVLLKSYKPKDSQVGH 186 (244)
Q Consensus 155 ~~l~~~~--~~~---~l~~~l~~~~~~lk~gG~~~~~ 186 (244)
.+=-++. +.. --...++.+++.|||||.+.+.
T Consensus 425 FPDPWpKkrh~krRl~~~~fl~~~~~~Lk~gG~i~~~ 461 (506)
T PRK01544 425 FPDPWIKNKQKKKRIFNKERLKILQDKLKDNGNLVFA 461 (506)
T ss_pred CCCCCCCCCCccccccCHHHHHHHHHhcCCCCEEEEE
Confidence 5542221 101 1127888999999999988776
|
|
| >PF01728 FtsJ: FtsJ-like methyltransferase; InterPro: IPR002877 RrmJ (FtsJ) is a well conserved heat shock protein present in prokaryotes, archaea, and eukaryotes | Back alignment and domain information |
|---|
Probab=97.96 E-value=2.5e-06 Score=66.14 Aligned_cols=118 Identities=17% Similarity=0.172 Sum_probs=66.3
Q ss_pred chHHHHHHHHhhccCcc--cCCeEEEeCCCCcHHHHHHHHhC--CCeEEEEeCChHHHHHHHHHhHHhcCCCCCcceEee
Q 026036 60 PGTFSFAEWLMHHREWI--ERRRCIELGSGTGALAIFLRKAM--NLDITTSDYNDQEIEDNIAYNSTTNGITPALPHIKH 135 (244)
Q Consensus 60 ~~~~~l~~~~~~~~~~~--~~~~VLdlG~G~G~~~~~~a~~~--~~~v~~~D~~~~~l~~~~~~~~~~~~~~~~~~~~~~ 135 (244)
.++..|.+......-.. .+.+||||||+.|..+..+.+.. ..+|+|+|+.+.. .. .+.. .+... ....
T Consensus 4 Ra~~KL~ei~~~~~~~~~~~~~~vlDlG~aPGGws~~~~~~~~~~~~v~avDl~~~~--~~--~~~~--~i~~d--~~~~ 75 (181)
T PF01728_consen 4 RAAFKLYEIDEKFKIFKPGKGFTVLDLGAAPGGWSQVLLQRGGPAGRVVAVDLGPMD--PL--QNVS--FIQGD--ITNP 75 (181)
T ss_dssp THHHHHHHHHHTTSSS-TTTTEEEEEET-TTSHHHHHHHTSTTTEEEEEEEESSSTG--S---TTEE--BTTGG--GEEE
T ss_pred HHHHHHHHHHHHCCCCCcccccEEEEcCCcccceeeeeeecccccceEEEEeccccc--cc--ccee--eeecc--cchh
Confidence 36677777776665333 45899999999999999998886 5889999998741 00 0000 01000 0110
Q ss_pred ecC----CCCCCCCCCccEEEEcccccCC---------cChHHHHHHHHHHHHhcCCCCceEee
Q 026036 136 SWG----DAFPIPNPDWDLILASDILLYV---------KQYSNLIKSLSVLLKSYKPKDSQVGH 186 (244)
Q Consensus 136 ~~~----~~~~~~~~~fD~I~~~~~l~~~---------~~~~~l~~~l~~~~~~lk~gG~~~~~ 186 (244)
... +.+.....++|+|+| |+-... ....-....+.-+...|+|||.+++.
T Consensus 76 ~~~~~i~~~~~~~~~~~dlv~~-D~~~~~~g~~~~d~~~~~~l~~~~l~~a~~~L~~gG~~v~K 138 (181)
T PF01728_consen 76 ENIKDIRKLLPESGEKFDLVLS-DMAPNVSGDRNIDEFISIRLILSQLLLALELLKPGGTFVIK 138 (181)
T ss_dssp EHSHHGGGSHGTTTCSESEEEE--------SSHHSSHHHHHHHHHHHHHHHHHHHCTTEEEEEE
T ss_pred hHHHhhhhhccccccCcceecc-ccccCCCCchhhHHHHHHHHHHHHHHHHHhhhcCCCEEEEE
Confidence 000 111112258999998 441111 11222335555666789999988775
|
RrmJ is responsible for methylating 23 S rRNA at position U2552 in the aminoacyl (A)1-site of the ribosome []. U2552 is one of the five universally conserved A-loop residues and has been shown to be methylated at the ribose 2'-OH group in the majority of organisms investigated so far. This suggests that this modification plays an important role in the A-loop function. RrmJ recognises its methylation target only when the 23 S rRNA is present in 50 S ribosomal subunits. This suggests that the RrmJ-mediated methylation must occur late in the maturation process of the ribosome. This is in contrast to other known 23 S rRNA modifications that occur in earlier maturation steps. The 1.5 A crystal structure of RrmJ in complex with its cofactor S-adenosylmethionine revealed that RrmJ has a methyltransferase fold. The active site of RrmJ appears to be formed by a catalytic triad consisting of two lysine residues and the negatively charged aspartate residue. Another highly conserved glutamate residue that is present in the active site of RrmJ appears to play only a minor role in the methyltransfer reaction in vivo []. ; GO: 0003676 nucleic acid binding, 0008168 methyltransferase activity, 0032259 methylation; PDB: 3GCZ_A 2PLW_A 2NYU_A 2OXT_C 3EMD_A 3ELY_A 3ELW_A 3ELU_A 3ELD_A 3EMB_A .... |
| >COG0293 FtsJ 23S rRNA methylase [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=97.91 E-value=0.0004 Score=54.31 Aligned_cols=112 Identities=17% Similarity=0.200 Sum_probs=70.9
Q ss_pred hHHHHHHHHhhccCcccCCeEEEeCCCCcHHHHHHHHhCCC--eEEEEeCChHHHHHHHHHhHHhcCCCCCcceEeeecC
Q 026036 61 GTFSFAEWLMHHREWIERRRCIELGSGTGALAIFLRKAMNL--DITTSDYNDQEIEDNIAYNSTTNGITPALPHIKHSWG 138 (244)
Q Consensus 61 ~~~~l~~~~~~~~~~~~~~~VLdlG~G~G~~~~~~a~~~~~--~v~~~D~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 138 (244)
++..|.+...++.-+.++.+|+||||-.|..+..+++..+. .|+++|+.+-.. ++ .+..++.+..
T Consensus 29 Aa~KL~el~~k~~i~~~~~~ViDLGAAPGgWsQva~~~~~~~~~ivavDi~p~~~------------~~-~V~~iq~d~~ 95 (205)
T COG0293 29 AAYKLLELNEKFKLFKPGMVVVDLGAAPGGWSQVAAKKLGAGGKIVAVDILPMKP------------IP-GVIFLQGDIT 95 (205)
T ss_pred HHHHHHHHHHhcCeecCCCEEEEcCCCCCcHHHHHHHHhCCCCcEEEEECccccc------------CC-CceEEeeecc
Confidence 67777777777755667899999999999999999888754 499999987321 11 1234444433
Q ss_pred CCCC-------CCCCCccEEEEccccc--------CCcChHHHH-HHHHHHHHhcCCCCceEee
Q 026036 139 DAFP-------IPNPDWDLILASDILL--------YVKQYSNLI-KSLSVLLKSYKPKDSQVGH 186 (244)
Q Consensus 139 ~~~~-------~~~~~fD~I~~~~~l~--------~~~~~~~l~-~~l~~~~~~lk~gG~~~~~ 186 (244)
+... ....++|+|++ |+-- +|.....+. .++.-....|+|||.+++-
T Consensus 96 ~~~~~~~l~~~l~~~~~DvV~s-D~ap~~~g~~~~Dh~r~~~L~~~a~~~a~~vL~~~G~fv~K 158 (205)
T COG0293 96 DEDTLEKLLEALGGAPVDVVLS-DMAPNTSGNRSVDHARSMYLCELALEFALEVLKPGGSFVAK 158 (205)
T ss_pred CccHHHHHHHHcCCCCcceEEe-cCCCCcCCCccccHHHHHHHHHHHHHHHHHeeCCCCeEEEE
Confidence 3211 12234798885 3322 222222333 3344455799999988775
|
|
| >PRK10742 putative methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=97.89 E-value=7.5e-05 Score=60.08 Aligned_cols=86 Identities=13% Similarity=0.063 Sum_probs=54.6
Q ss_pred CcccCC--eEEEeCCCCcHHHHHHHHhCCCeEEEEeCChHHHHHHHHHhHHhcC----CCCCc-ceEeeecCCC---CCC
Q 026036 74 EWIERR--RCIELGSGTGALAIFLRKAMNLDITTSDYNDQEIEDNIAYNSTTNG----ITPAL-PHIKHSWGDA---FPI 143 (244)
Q Consensus 74 ~~~~~~--~VLdlG~G~G~~~~~~a~~~~~~v~~~D~~~~~l~~~~~~~~~~~~----~~~~~-~~~~~~~~~~---~~~ 143 (244)
.+.+|. +|||+-+|+|..++.++.. +++|+++|.++... ..++.++.... +...+ ..+.+..++. +..
T Consensus 83 glk~g~~p~VLD~TAGlG~Da~~las~-G~~V~~vEr~p~va-alL~dgL~ra~~~~~~~~~~~~ri~l~~~da~~~L~~ 160 (250)
T PRK10742 83 GIKGDYLPDVVDATAGLGRDAFVLASV-GCRVRMLERNPVVA-ALLDDGLARGYADAEIGGWLQERLQLIHASSLTALTD 160 (250)
T ss_pred CCCCCCCCEEEECCCCccHHHHHHHHc-CCEEEEEECCHHHH-HHHHHHHHHhhhccccchhhhceEEEEeCcHHHHHhh
Confidence 344666 8999999999999999877 66799999999754 56666555421 11000 1233333332 222
Q ss_pred CCCCccEEEEcccccCCcC
Q 026036 144 PNPDWDLILASDILLYVKQ 162 (244)
Q Consensus 144 ~~~~fD~I~~~~~l~~~~~ 162 (244)
...+||+|+. |+.|-+..
T Consensus 161 ~~~~fDVVYl-DPMfp~~~ 178 (250)
T PRK10742 161 ITPRPQVVYL-DPMFPHKQ 178 (250)
T ss_pred CCCCCcEEEE-CCCCCCCc
Confidence 2347999997 66655543
|
|
| >PRK11760 putative 23S rRNA C2498 ribose 2'-O-ribose methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=97.84 E-value=0.00055 Score=57.63 Aligned_cols=49 Identities=18% Similarity=0.253 Sum_probs=38.1
Q ss_pred hHHHHHHHHhhcc-------CcccCCeEEEeCCCCcHHHHHHHHhCCCeEEEEeCCh
Q 026036 61 GTFSFAEWLMHHR-------EWIERRRCIELGSGTGALAIFLRKAMNLDITTSDYND 110 (244)
Q Consensus 61 ~~~~l~~~~~~~~-------~~~~~~~VLdlG~G~G~~~~~~a~~~~~~v~~~D~~~ 110 (244)
++..|.+.+.... ...+|.++|||||++|..+..+.+. +.+|+++|..+
T Consensus 188 s~lKLeEA~~~F~~~~~~~~~~~~g~~vlDLGAsPGGWT~~L~~r-G~~V~AVD~g~ 243 (357)
T PRK11760 188 STLKLEEAFHVFIPRDEWDERLAPGMRAVDLGAAPGGWTYQLVRR-GMFVTAVDNGP 243 (357)
T ss_pred HHHHHHHHHHhcccchhhhcccCCCCEEEEeCCCCcHHHHHHHHc-CCEEEEEechh
Confidence 5666666654432 2468999999999999999999887 56999999655
|
|
| >TIGR01444 fkbM_fam methyltransferase, FkbM family | Back alignment and domain information |
|---|
Probab=97.84 E-value=8e-05 Score=55.17 Aligned_cols=56 Identities=9% Similarity=0.165 Sum_probs=43.9
Q ss_pred eEEEeCCCCcHHHHHHHHhCC-CeEEEEeCChHHHHHHHHHhHHhcCCCCCcceEeeec
Q 026036 80 RCIELGSGTGALAIFLRKAMN-LDITTSDYNDQEIEDNIAYNSTTNGITPALPHIKHSW 137 (244)
Q Consensus 80 ~VLdlG~G~G~~~~~~a~~~~-~~v~~~D~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~ 137 (244)
.|||+|||.|..+..+++.+. .+|+++|.++.++ +.+++|...|+.+ ++..+....
T Consensus 1 ~vlDiGa~~G~~~~~~~~~~~~~~v~~~E~~~~~~-~~l~~~~~~n~~~-~v~~~~~al 57 (143)
T TIGR01444 1 VVIDVGANIGDTSLYFARKGAEGRVIAFEPLPDAY-EILEENVKLNNLP-NVVLLNAAV 57 (143)
T ss_pred CEEEccCCccHHHHHHHHhCCCCEEEEEecCHHHH-HHHHHHHHHcCCC-cEEEEEeee
Confidence 489999999999999988763 4899999999986 8888888887763 244444333
|
Members of this family are characterized by two well-conserved short regions separated by a variable in both sequence and length. The first of the two regions is found in a large number of proteins outside this subfamily, a number of which have been characterized as methyltransferases. One member of the present family, FkbM, was shown to be required for a specific methylation in the biosynthesis of the immunosuppressant FK506 in Streptomyces strain MA6548. |
| >KOG2730 consensus Methylase [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.79 E-value=2.3e-05 Score=61.18 Aligned_cols=119 Identities=15% Similarity=0.104 Sum_probs=79.5
Q ss_pred eechHHHHHHHHhhccC-cccCCeEEEeCCCCcHHHHHHHHhCCCeEEEEeCChHHHHHHHHHhHHhcCCCCCcceEeee
Q 026036 58 LWPGTFSFAEWLMHHRE-WIERRRCIELGSGTGALAIFLRKAMNLDITTSDYNDQEIEDNIAYNSTTNGITPALPHIKHS 136 (244)
Q Consensus 58 ~w~~~~~l~~~~~~~~~-~~~~~~VLdlG~G~G~~~~~~a~~~~~~v~~~D~~~~~l~~~~~~~~~~~~~~~~~~~~~~~ 136 (244)
.|-.-+.++.++..... ...-..|+|.-||.|..++-++.+ ++.|+++|+++..+ ..++.|++..+++.++..++.+
T Consensus 74 fsvTpe~ia~~iA~~v~~~~~~~~iidaf~g~gGntiqfa~~-~~~VisIdiDPikI-a~AkhNaeiYGI~~rItFI~GD 151 (263)
T KOG2730|consen 74 FSVTPEKIAEHIANRVVACMNAEVIVDAFCGVGGNTIQFALQ-GPYVIAIDIDPVKI-ACARHNAEVYGVPDRITFICGD 151 (263)
T ss_pred EEeccHHHHHHHHHHHHHhcCcchhhhhhhcCCchHHHHHHh-CCeEEEEeccHHHH-HHHhccceeecCCceeEEEech
Confidence 34344444544443321 114468999999999888888766 88999999999887 8889999999998888777776
Q ss_pred cCCC---CCCCCCCccEEEEcccccCCcChHHHHHHHHHHHHhcCCCC
Q 026036 137 WGDA---FPIPNPDWDLILASDILLYVKQYSNLIKSLSVLLKSYKPKD 181 (244)
Q Consensus 137 ~~~~---~~~~~~~fD~I~~~~~l~~~~~~~~l~~~l~~~~~~lk~gG 181 (244)
|-+. +.+....+|+|+.+.+. . ...-+...+-.+...++|.|
T Consensus 152 ~ld~~~~lq~~K~~~~~vf~sppw-g--gp~y~~~~~~DL~~~~~p~~ 196 (263)
T KOG2730|consen 152 FLDLASKLKADKIKYDCVFLSPPW-G--GPSYLRADVYDLETHLKPMG 196 (263)
T ss_pred HHHHHHHHhhhhheeeeeecCCCC-C--CcchhhhhhhhhhhhcchhH
Confidence 6543 23333357788887765 2 22333455555666666654
|
|
| >PF01861 DUF43: Protein of unknown function DUF43; InterPro: IPR002723 This family of prokaryotic proteins have not been characterised | Back alignment and domain information |
|---|
Probab=97.78 E-value=0.0024 Score=51.08 Aligned_cols=152 Identities=15% Similarity=0.133 Sum_probs=84.3
Q ss_pred cceeechHHHHHHHHhhccCcccCCeEEEeCCCCcHHHHHHHHhC-CCeEEEEeCChHHHHHHHHHhHHhcCCCCCcceE
Q 026036 55 ANFLWPGTFSFAEWLMHHREWIERRRCIELGSGTGALAIFLRKAM-NLDITTSDYNDQEIEDNIAYNSTTNGITPALPHI 133 (244)
Q Consensus 55 ~~~~w~~~~~l~~~~~~~~~~~~~~~VLdlG~G~G~~~~~~a~~~-~~~v~~~D~~~~~l~~~~~~~~~~~~~~~~~~~~ 133 (244)
+...+..+..=+.|+.++.. ..|++||=+|= -=+.|++++..+ ..+|+.+|+++..+ +..++.+...+++ +..+
T Consensus 23 ~~~T~eT~~~Ra~~~~~~gd-L~gk~il~lGD-DDLtSlA~al~~~~~~I~VvDiDeRll-~fI~~~a~~~gl~--i~~~ 97 (243)
T PF01861_consen 23 GYATPETTLRRAALMAERGD-LEGKRILFLGD-DDLTSLALALTGLPKRITVVDIDERLL-DFINRVAEEEGLP--IEAV 97 (243)
T ss_dssp --B-HHHHHHHHHHHHHTT--STT-EEEEES--TT-HHHHHHHHT--SEEEEE-S-HHHH-HHHHHHHHHHT----EEEE
T ss_pred ccccHHHHHHHHHHHHhcCc-ccCCEEEEEcC-CcHHHHHHHhhCCCCeEEEEEcCHHHH-HHHHHHHHHcCCc--eEEE
Confidence 34445566666677766544 57899999983 335566666544 78999999999876 8888888887773 5666
Q ss_pred eeecCCCCCCC-CCCccEEEEcccccCCcChHHHHHHHHHHHHhcCCCC-ceEeecccccCCCCCCCCCCCeEEEeeeec
Q 026036 134 KHSWGDAFPIP-NPDWDLILASDILLYVKQYSNLIKSLSVLLKSYKPKD-SQVGHLTKNEQGEGTEGLPWPAFLMSWRRR 211 (244)
Q Consensus 134 ~~~~~~~~~~~-~~~fD~I~~~~~l~~~~~~~~l~~~l~~~~~~lk~gG-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 211 (244)
..+..+++|.. .++||++++ |+.|. .+-+.-.+.+....||..| ..++. +..+
T Consensus 98 ~~DlR~~LP~~~~~~fD~f~T-DPPyT---~~G~~LFlsRgi~~Lk~~g~~gy~~---------------------~~~~ 152 (243)
T PF01861_consen 98 HYDLRDPLPEELRGKFDVFFT-DPPYT---PEGLKLFLSRGIEALKGEGCAGYFG---------------------FTHK 152 (243)
T ss_dssp ---TTS---TTTSS-BSEEEE----SS---HHHHHHHHHHHHHTB-STT-EEEEE---------------------E-TT
T ss_pred EecccccCCHHHhcCCCEEEe-CCCCC---HHHHHHHHHHHHHHhCCCCceEEEE---------------------EecC
Confidence 66776776643 568999988 44434 3455577788888888755 33332 2211
Q ss_pred c-CccchhhHHHHHhhcCCeEEEecc
Q 026036 212 I-GKEDETIFFTSCENAGLEVKHLGS 236 (244)
Q Consensus 212 ~-~~~~~~~~~~~l~~~Gf~v~~~~~ 236 (244)
. ....+..+-+.+.+.||.++.+-.
T Consensus 153 ~~s~~~~~~~Q~~l~~~gl~i~dii~ 178 (243)
T PF01861_consen 153 EASPDKWLEVQRFLLEMGLVITDIIP 178 (243)
T ss_dssp T--HHHHHHHHHHHHTS--EEEEEEE
T ss_pred cCcHHHHHHHHHHHHHCCcCHHHHHh
Confidence 1 111234566777789999988754
|
All the members are 350-400 amino acids long.; PDB: 2QM3_A. |
| >KOG1501 consensus Arginine N-methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.77 E-value=4.5e-05 Score=65.36 Aligned_cols=97 Identities=15% Similarity=0.114 Sum_probs=65.3
Q ss_pred eEEEeCCCCcHHHHHHHHhCCCeEEEEeCChHHHHHHHHHhHHhcCCCCCcceEeeecCCCCCCCCCCccEEEEcccccC
Q 026036 80 RCIELGSGTGALAIFLRKAMNLDITTSDYNDQEIEDNIAYNSTTNGITPALPHIKHSWGDAFPIPNPDWDLILASDILLY 159 (244)
Q Consensus 80 ~VLdlG~G~G~~~~~~a~~~~~~v~~~D~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fD~I~~~~~l~~ 159 (244)
-|||+|+|||++++.+++.++-.|++++.-..|. +.+++-...|+.++++..+.-...+-......+-|+++..+.. .
T Consensus 69 ~vLdigtGTGLLSmMAvragaD~vtA~EvfkPM~-d~arkI~~kng~SdkI~vInkrStev~vg~~~RadI~v~e~fd-t 146 (636)
T KOG1501|consen 69 FVLDIGTGTGLLSMMAVRAGADSVTACEVFKPMV-DLARKIMHKNGMSDKINVINKRSTEVKVGGSSRADIAVREDFD-T 146 (636)
T ss_pred EEEEccCCccHHHHHHHHhcCCeEEeehhhchHH-HHHHHHHhcCCCccceeeeccccceeeecCcchhhhhhHhhhh-h
Confidence 5899999999999999999888899999988887 8888888999998877776443332222222346666554432 1
Q ss_pred CcChHHHHHHHHHHHHhcC
Q 026036 160 VKQYSNLIKSLSVLLKSYK 178 (244)
Q Consensus 160 ~~~~~~l~~~l~~~~~~lk 178 (244)
..-.+-+..+++++++.|-
T Consensus 147 EligeGalps~qhAh~~L~ 165 (636)
T KOG1501|consen 147 ELIGEGALPSLQHAHDMLL 165 (636)
T ss_pred hhhccccchhHHHHHHHhc
Confidence 1111224455666665443
|
|
| >COG1889 NOP1 Fibrillarin-like rRNA methylase [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=97.67 E-value=0.0085 Score=46.60 Aligned_cols=122 Identities=12% Similarity=0.062 Sum_probs=73.2
Q ss_pred ceeech-HHHHHHHHhh---ccCcccCCeEEEeCCCCcHHHHHHHHhCC-CeEEEEeCChHHHHHHHHHhHHhcCCCCCc
Q 026036 56 NFLWPG-TFSFAEWLMH---HREWIERRRCIELGSGTGALAIFLRKAMN-LDITTSDYNDQEIEDNIAYNSTTNGITPAL 130 (244)
Q Consensus 56 ~~~w~~-~~~l~~~~~~---~~~~~~~~~VLdlG~G~G~~~~~~a~~~~-~~v~~~D~~~~~l~~~~~~~~~~~~~~~~~ 130 (244)
...|+. --.|+.-++. ..++.+|.+||=||+-+|....+.+.-.+ ..+++++.++.+..+.+......+++ +
T Consensus 51 YR~Wnp~RSKLaAaIl~Gl~~~pi~~g~~VLYLGAasGTTvSHVSDIv~~G~iYaVEfs~R~~reLl~~a~~R~Ni---~ 127 (231)
T COG1889 51 YREWNPRRSKLAAAILKGLKNFPIKEGSKVLYLGAASGTTVSHVSDIVGEGRIYAVEFSPRPMRELLDVAEKRPNI---I 127 (231)
T ss_pred eeeeCcchhHHHHHHHcCcccCCcCCCCEEEEeeccCCCcHhHHHhccCCCcEEEEEecchhHHHHHHHHHhCCCc---e
Confidence 445544 2244444443 25677999999999999988888876654 67999999998665555433333333 1
Q ss_pred ceEeeecCCCCC--CCCCCccEEEEcccccCCcChHHHHHHHHHHHHhcCCCCceEee
Q 026036 131 PHIKHSWGDAFP--IPNPDWDLILASDILLYVKQYSNLIKSLSVLLKSYKPKDSQVGH 186 (244)
Q Consensus 131 ~~~~~~~~~~~~--~~~~~fD~I~~~~~l~~~~~~~~l~~~l~~~~~~lk~gG~~~~~ 186 (244)
.+--|...+.. ..-+..|+|+. |+- ...+..=...++...||+||.+++.
T Consensus 128 -PIL~DA~~P~~Y~~~Ve~VDviy~-DVA----Qp~Qa~I~~~Na~~FLk~~G~~~i~ 179 (231)
T COG1889 128 -PILEDARKPEKYRHLVEKVDVIYQ-DVA----QPNQAEILADNAEFFLKKGGYVVIA 179 (231)
T ss_pred -eeecccCCcHHhhhhcccccEEEE-ecC----CchHHHHHHHHHHHhcccCCeEEEE
Confidence 11111111111 12245777765 443 2334445557788899999977765
|
|
| >PF01269 Fibrillarin: Fibrillarin; InterPro: IPR000692 Fibrillarin is a component of a nucleolar small nuclear ribonucleoprotein (SnRNP), functioning in vivo in ribosomal RNA processing [, ] | Back alignment and domain information |
|---|
Probab=97.60 E-value=0.00048 Score=54.34 Aligned_cols=123 Identities=11% Similarity=0.139 Sum_probs=70.6
Q ss_pred cceeech-HHHHHHHHhh---ccCcccCCeEEEeCCCCcHHHHHHHHhC--CCeEEEEeCChHHHHHHHHHhHHhcCCCC
Q 026036 55 ANFLWPG-TFSFAEWLMH---HREWIERRRCIELGSGTGALAIFLRKAM--NLDITTSDYNDQEIEDNIAYNSTTNGITP 128 (244)
Q Consensus 55 ~~~~w~~-~~~l~~~~~~---~~~~~~~~~VLdlG~G~G~~~~~~a~~~--~~~v~~~D~~~~~l~~~~~~~~~~~~~~~ 128 (244)
+..+|.. --.|+..+.. ...+.+|.+||-||+.+|..-.+++.-. ...|++++.|+....+.+.-.....++
T Consensus 47 eYR~W~P~RSKLaAai~~Gl~~~~ik~gskVLYLGAasGTTVSHvSDIvg~~G~VYaVEfs~r~~rdL~~la~~R~NI-- 124 (229)
T PF01269_consen 47 EYRVWNPFRSKLAAAILKGLENIPIKPGSKVLYLGAASGTTVSHVSDIVGPDGVVYAVEFSPRSMRDLLNLAKKRPNI-- 124 (229)
T ss_dssp EEEEE-TTT-HHHHHHHTT-S--S--TT-EEEEETTTTSHHHHHHHHHHTTTSEEEEEESSHHHHHHHHHHHHHSTTE--
T ss_pred ceeecCchhhHHHHHHHcCccccCCCCCCEEEEecccCCCccchhhhccCCCCcEEEEEecchhHHHHHHHhccCCce--
Confidence 3445654 2345555543 3567789999999999999888887654 457999999997654444322222222
Q ss_pred CcceEeeecCCCCC--CCCCCccEEEEcccccCCcChHHHHHHHHHHHHhcCCCCceEee
Q 026036 129 ALPHIKHSWGDAFP--IPNPDWDLILASDILLYVKQYSNLIKSLSVLLKSYKPKDSQVGH 186 (244)
Q Consensus 129 ~~~~~~~~~~~~~~--~~~~~fD~I~~~~~l~~~~~~~~l~~~l~~~~~~lk~gG~~~~~ 186 (244)
++.+ -|...+.. ..-+..|+|++ |+- ...+..-++.++...||+||.+++.
T Consensus 125 -iPIl-~DAr~P~~Y~~lv~~VDvI~~-DVa----Qp~Qa~I~~~Na~~fLk~gG~~~i~ 177 (229)
T PF01269_consen 125 -IPIL-EDARHPEKYRMLVEMVDVIFQ-DVA----QPDQARIAALNARHFLKPGGHLIIS 177 (229)
T ss_dssp -EEEE-S-TTSGGGGTTTS--EEEEEE-E-S----STTHHHHHHHHHHHHEEEEEEEEEE
T ss_pred -eeee-ccCCChHHhhcccccccEEEe-cCC----ChHHHHHHHHHHHhhccCCcEEEEE
Confidence 1222 12222211 12347898887 553 2345556667888899999998887
|
It is associated with U3, U8 and U13 small nuclear RNAs in mammals [] and is similar to the yeast NOP1 protein []. Fibrillarin has a well conserved sequence of around 320 amino acids, and contains 3 domains, an N-terminal Gly/Arg-rich region; a central domain resembling other RNA-binding proteins and containing an RNP-2-like consensus sequence; and a C-terminal alpha-helical domain. An evolutionarily related pre-rRNA processing protein, which lacks the Gly/Arg-rich domain, has been found in various archaebacteria.; GO: 0003723 RNA binding, 0008168 methyltransferase activity, 0006364 rRNA processing, 0008033 tRNA processing; PDB: 3PLA_E 3ID6_C 3ID5_B 1NT2_A 3NVK_J 2NNW_B 3NVM_B 3NMU_J 1PRY_A 1G8A_A .... |
| >PF00398 RrnaAD: Ribosomal RNA adenine dimethylase; InterPro: IPR001737 This family of proteins include rRNA adenine dimethylases (e | Back alignment and domain information |
|---|
Probab=97.59 E-value=0.00062 Score=56.00 Aligned_cols=88 Identities=16% Similarity=0.156 Sum_probs=59.3
Q ss_pred HHHHHHHHhhccCcccCCeEEEeCCCCcHHHHHHHHhCCCeEEEEeCChHHHHHHHHHhHHhcCCCCCcceEeeecCCCC
Q 026036 62 TFSFAEWLMHHREWIERRRCIELGSGTGALAIFLRKAMNLDITTSDYNDQEIEDNIAYNSTTNGITPALPHIKHSWGDAF 141 (244)
Q Consensus 62 ~~~l~~~~~~~~~~~~~~~VLdlG~G~G~~~~~~a~~~~~~v~~~D~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 141 (244)
...+++.+.+.....++..|||+|+|+|.++..++..+ .+|+++|+++..+ +.++..... ..+ +++..+|.+
T Consensus 15 ~~~~~~~Iv~~~~~~~~~~VlEiGpG~G~lT~~L~~~~-~~v~~vE~d~~~~-~~L~~~~~~---~~~---~~vi~~D~l 86 (262)
T PF00398_consen 15 DPNIADKIVDALDLSEGDTVLEIGPGPGALTRELLKRG-KRVIAVEIDPDLA-KHLKERFAS---NPN---VEVINGDFL 86 (262)
T ss_dssp HHHHHHHHHHHHTCGTTSEEEEESSTTSCCHHHHHHHS-SEEEEEESSHHHH-HHHHHHCTT---CSS---EEEEES-TT
T ss_pred CHHHHHHHHHhcCCCCCCEEEEeCCCCccchhhHhccc-CcceeecCcHhHH-HHHHHHhhh---ccc---ceeeecchh
Confidence 45566666666666688999999999999999998875 8999999999865 666654331 122 333344444
Q ss_pred CCCC-----CCccEEEEcccc
Q 026036 142 PIPN-----PDWDLILASDIL 157 (244)
Q Consensus 142 ~~~~-----~~fD~I~~~~~l 157 (244)
.... .....|++|-+.
T Consensus 87 ~~~~~~~~~~~~~~vv~NlPy 107 (262)
T PF00398_consen 87 KWDLYDLLKNQPLLVVGNLPY 107 (262)
T ss_dssp TSCGGGHCSSSEEEEEEEETG
T ss_pred ccccHHhhcCCceEEEEEecc
Confidence 3321 234577776553
|
g. KsgA) and the Erythromycin resistance methylases (Erm). The bacterial enzyme KsgA catalyses the transfer of a total of four methyl groups from S-adenosyl-l-methionine (S-AdoMet) to two adjacent adenosine bases in 16S rRNA. This enzyme and the resulting modified adenosine bases appear to be conserved in all species of eubacteria, eukaryotes, and archaea, and in eukaryotic organelles. Bacterial resistance to the aminoglycoside antibiotic kasugamycin involves inactivation of KsgA and resulting loss of the dimethylations, with modest consequences to the overall fitness of the organism. In contrast, the yeast ortholog, Dim1, is essential. In Saccharomyces cerevisiae (Baker's yeast), and presumably in other eukaryotes, the enzyme performs a vital role in pre-rRNA processing in addition to its methylating activity. The best conserved region in these enzymes is located in the N-terminal section and corresponds to a region that is probably involved in S-adenosyl methionine (SAM) binding domain. The crystal structure of KsgA from Escherichia coli has been solved to a resolution of 2.1A. It bears a strong similarity to the crystal structure of ErmC' from Bacillus stearothermophilus and a lesser similarity to the yeast mitochondrial transcription factor, sc-mtTFB []. The Erm family of RNA methyltransferases, which methylate a single adenosine base in 23S rRNA confer resistance to the MLS-B group of antibiotics. Despite their sequence similarity, the two enzyme families have strikingly different levels of regulation that remain to be elucidated. Other orthologs, of this family include the yeast and Homo sapiens (Human) mitochondrial transcription factors (MTF1 and h-mtTFB respectively), which are nuclear encoded []. Human-mtTFB is able to stimulate transcription in vitro independently of its S-adenosylmethionine binding and rRNA methyltransferase activity [].; GO: 0000179 rRNA (adenine-N6,N6-)-dimethyltransferase activity, 0008649 rRNA methyltransferase activity, 0000154 rRNA modification; PDB: 3FTF_A 3R9X_B 3FTE_A 3FTC_A 3FTD_A 3GRY_A 3FYC_A 3GRU_A 3FYD_A 3GRV_A .... |
| >PHA01634 hypothetical protein | Back alignment and domain information |
|---|
Probab=97.59 E-value=0.00053 Score=49.04 Aligned_cols=73 Identities=12% Similarity=0.135 Sum_probs=53.1
Q ss_pred cccCCeEEEeCCCCcHHHHHHHHhCCCeEEEEeCChHHHHHHHHHhHHhcCCCCCcceEeeecCCCCCCCCCCccEEEE
Q 026036 75 WIERRRCIELGSGTGALAIFLRKAMNLDITTSDYNDQEIEDNIAYNSTTNGITPALPHIKHSWGDAFPIPNPDWDLILA 153 (244)
Q Consensus 75 ~~~~~~VLdlG~G~G~~~~~~a~~~~~~v~~~D~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fD~I~~ 153 (244)
..++++|+|+|++.|-.++.++.+++.+|++++.++... +..+.|+..+.+-++.. ....|.. .-+.||+.++
T Consensus 26 dvk~KtV~dIGA~iGdSaiYF~l~GAK~Vva~E~~~kl~-k~~een~k~nnI~DK~v-~~~eW~~----~Y~~~Di~~i 98 (156)
T PHA01634 26 NVYQRTIQIVGADCGSSALYFLLRGASFVVQYEKEEKLR-KKWEEVCAYFNICDKAV-MKGEWNG----EYEDVDIFVM 98 (156)
T ss_pred eecCCEEEEecCCccchhhHHhhcCccEEEEeccCHHHH-HHHHHHhhhheeeecee-ecccccc----cCCCcceEEE
Confidence 357899999999999999999999899999999999854 77788888776522111 1123432 3356886554
|
|
| >COG2384 Predicted SAM-dependent methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.43 E-value=0.011 Score=46.66 Aligned_cols=122 Identities=16% Similarity=0.168 Sum_probs=81.9
Q ss_pred cCCeEEEeCCCCcHHHHHHHHhC-CCeEEEEeCChHHHHHHHHHhHHhcCCCCCcceEeeecCCCCCCC--CCCccEEEE
Q 026036 77 ERRRCIELGSGTGALAIFLRKAM-NLDITTSDYNDQEIEDNIAYNSTTNGITPALPHIKHSWGDAFPIP--NPDWDLILA 153 (244)
Q Consensus 77 ~~~~VLdlG~G~G~~~~~~a~~~-~~~v~~~D~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~fD~I~~ 153 (244)
.+.++.|+||--|.+..++.+.+ ...+++.|+++..+ +.+.+|+..+++..+ +..+.+|.++.. +..+|+|+.
T Consensus 16 ~~~~iaDIGsDHAYLp~~Lv~~~~~~~~va~eV~~gpl-~~a~~~v~~~~l~~~---i~vr~~dgl~~l~~~d~~d~ivI 91 (226)
T COG2384 16 QGARIADIGSDHAYLPIYLVKNNPASTAVAGEVVPGPL-ESAIRNVKKNNLSER---IDVRLGDGLAVLELEDEIDVIVI 91 (226)
T ss_pred cCCceeeccCchhHhHHHHHhcCCcceEEEeecccCHH-HHHHHHHHhcCCcce---EEEeccCCccccCccCCcCEEEE
Confidence 55679999999999999998877 56799999999987 788889988888544 444455554322 336899888
Q ss_pred cccccCCcChHHHHHHHHHHHHhcCCCCceEeecccccCCCCCCCCCCCeEEEeeeeccCccchhhHHHHHhhcCCeEEE
Q 026036 154 SDILLYVKQYSNLIKSLSVLLKSYKPKDSQVGHLTKNEQGEGTEGLPWPAFLMSWRRRIGKEDETIFFTSCENAGLEVKH 233 (244)
Q Consensus 154 ~~~l~~~~~~~~l~~~l~~~~~~lk~gG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gf~v~~ 233 (244)
+.+= ..-....+++-...++.=-++++. |... ...+.+.+.+++|+++.
T Consensus 92 AGMG-----G~lI~~ILee~~~~l~~~~rlILQ-----------------------Pn~~---~~~LR~~L~~~~~~I~~ 140 (226)
T COG2384 92 AGMG-----GTLIREILEEGKEKLKGVERLILQ-----------------------PNIH---TYELREWLSANSYEIKA 140 (226)
T ss_pred eCCc-----HHHHHHHHHHhhhhhcCcceEEEC-----------------------CCCC---HHHHHHHHHhCCceeee
Confidence 6552 233335555555555422233332 2222 36777888888887654
|
|
| >KOG2798 consensus Putative trehalase [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=97.42 E-value=0.0067 Score=50.25 Aligned_cols=145 Identities=16% Similarity=0.163 Sum_probs=81.3
Q ss_pred ccCCeEEEeCCCCcHHHHHHHHhCCCeEEEEeCChHHHHHH-HHHhHHhc--CC---------------CCCcceEeee-
Q 026036 76 IERRRCIELGSGTGALAIFLRKAMNLDITTSDYNDQEIEDN-IAYNSTTN--GI---------------TPALPHIKHS- 136 (244)
Q Consensus 76 ~~~~~VLdlG~G~G~~~~~~a~~~~~~v~~~D~~~~~l~~~-~~~~~~~~--~~---------------~~~~~~~~~~- 136 (244)
....+||-=|||.|.++..++.. +-.+-|-+.|--|+.-. --.|.-.+ .. .+++..+.+.
T Consensus 149 r~ki~iLvPGaGlGRLa~dla~~-G~~~qGNEfSy~Mli~S~FiLN~~~~~nq~~IYPfIh~~sn~~~~dDQlrpi~~PD 227 (369)
T KOG2798|consen 149 RTKIRILVPGAGLGRLAYDLACL-GFKCQGNEFSYFMLICSSFILNYCKQENQFTIYPFIHQYSNSLSRDDQLRPISIPD 227 (369)
T ss_pred ccCceEEecCCCchhHHHHHHHh-cccccccHHHHHHHHHHHHHHHhhccCCcEEEEeeeeccccccccccccccccCcc
Confidence 34568999999999999999877 55566667777664211 11111111 00 0111111110
Q ss_pred ---------------c-CCCCC-----CCCCCccEEEEcccccCCcChHHHHHHHHHHHHhcCCCCceEee---cccccC
Q 026036 137 ---------------W-GDAFP-----IPNPDWDLILASDILLYVKQYSNLIKSLSVLLKSYKPKDSQVGH---LTKNEQ 192 (244)
Q Consensus 137 ---------------~-~~~~~-----~~~~~fD~I~~~~~l~~~~~~~~l~~~l~~~~~~lk~gG~~~~~---~~~~~~ 192 (244)
| +|.+. ...+.||+|+....+ ....+..+.|+.+.++|||||.++=. .+.+.+
T Consensus 228 ~~p~~~~~~~~~fsicaGDF~evy~~s~~~~~~d~VvTcfFI---DTa~NileYi~tI~~iLk~GGvWiNlGPLlYHF~d 304 (369)
T KOG2798|consen 228 IHPASSNGNTGSFSICAGDFLEVYGTSSGAGSYDVVVTCFFI---DTAHNILEYIDTIYKILKPGGVWINLGPLLYHFED 304 (369)
T ss_pred ccccccCCCCCCccccccceeEEecCcCCCCccceEEEEEEe---echHHHHHHHHHHHHhccCCcEEEeccceeeeccC
Confidence 0 11111 112369999987444 45678889999999999999975533 111111
Q ss_pred CCCCCCCCCCeEEEeeeeccCccchhhHHHHHhhcCCeEEEec
Q 026036 193 GEGTEGLPWPAFLMSWRRRIGKEDETIFFTSCENAGLEVKHLG 235 (244)
Q Consensus 193 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gf~v~~~~ 235 (244)
..+. .+ .. ....+-+++...++..||++++-.
T Consensus 305 ~~g~----~~------~~-siEls~edl~~v~~~~GF~~~ke~ 336 (369)
T KOG2798|consen 305 THGV----EN------EM-SIELSLEDLKRVASHRGFEVEKER 336 (369)
T ss_pred CCCC----cc------cc-cccccHHHHHHHHHhcCcEEEEee
Confidence 0000 00 00 111224778888999999988654
|
|
| >KOG2352 consensus Predicted spermine/spermidine synthase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=97.36 E-value=0.0016 Score=57.03 Aligned_cols=104 Identities=15% Similarity=0.167 Sum_probs=71.8
Q ss_pred eEEEeCCCCcHHHHHHHHhCCCeEEEEeCChHHHHHHHHHhHHhcCCCCCcceEeeecCCCCCCCCCCccEEEEcccccC
Q 026036 80 RCIELGSGTGALAIFLRKAMNLDITTSDYNDQEIEDNIAYNSTTNGITPALPHIKHSWGDAFPIPNPDWDLILASDILLY 159 (244)
Q Consensus 80 ~VLdlG~G~G~~~~~~a~~~~~~v~~~D~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fD~I~~~~~l~~ 159 (244)
++|.+|||.--+...+-+.+...|+.+|+|+..+.....++...+.. .......-+.+.+++++||+|+--..+ +
T Consensus 51 ~~l~lGCGNS~l~e~ly~~G~~dI~~iD~S~V~V~~m~~~~~~~~~~----~~~~~~d~~~l~fedESFdiVIdkGtl-D 125 (482)
T KOG2352|consen 51 KILQLGCGNSELSEHLYKNGFEDITNIDSSSVVVAAMQVRNAKERPE----MQMVEMDMDQLVFEDESFDIVIDKGTL-D 125 (482)
T ss_pred eeEeecCCCCHHHHHHHhcCCCCceeccccHHHHHHHHhccccCCcc----eEEEEecchhccCCCcceeEEEecCcc-c
Confidence 99999999999998887766778999999998764444455422211 111222224567889999999986655 2
Q ss_pred Cc----Ch----HHHHHHHHHHHHhcCCCCceEeecc
Q 026036 160 VK----QY----SNLIKSLSVLLKSYKPKDSQVGHLT 188 (244)
Q Consensus 160 ~~----~~----~~l~~~l~~~~~~lk~gG~~~~~~~ 188 (244)
+. .. ......+.++++++++||+++.++.
T Consensus 126 al~~de~a~~~~~~v~~~~~eVsrvl~~~gk~~svtl 162 (482)
T KOG2352|consen 126 ALFEDEDALLNTAHVSNMLDEVSRVLAPGGKYISVTL 162 (482)
T ss_pred cccCCchhhhhhHHhhHHHhhHHHHhccCCEEEEEEe
Confidence 21 10 1234778899999999999877644
|
|
| >PF01189 Nol1_Nop2_Fmu: NOL1/NOP2/sun family; InterPro: IPR001678 This domain is found in archaeal, bacterial and eukaryotic proteins | Back alignment and domain information |
|---|
Probab=97.36 E-value=0.00034 Score=58.12 Aligned_cols=126 Identities=14% Similarity=0.154 Sum_probs=78.8
Q ss_pred ceeechHHHHHHHHhhccCcccCCeEEEeCCCCcHHHHHHHHhC--CCeEEEEeCChHHHHHHHHHhHHhcCCCCCcceE
Q 026036 56 NFLWPGTFSFAEWLMHHREWIERRRCIELGSGTGALAIFLRKAM--NLDITTSDYNDQEIEDNIAYNSTTNGITPALPHI 133 (244)
Q Consensus 56 ~~~w~~~~~l~~~~~~~~~~~~~~~VLdlG~G~G~~~~~~a~~~--~~~v~~~D~~~~~l~~~~~~~~~~~~~~~~~~~~ 133 (244)
..+++.+-.++..++ ...++.+|||++++.|.=+.+++... ..+|++.|++..-+ ..++.|+...+... +...
T Consensus 67 ~~vQd~sS~l~~~~L---~~~~~~~VLD~CAapGgKt~~la~~~~~~g~i~A~D~~~~Rl-~~l~~~~~r~g~~~-v~~~ 141 (283)
T PF01189_consen 67 FYVQDESSQLVALAL---DPQPGERVLDMCAAPGGKTTHLAELMGNKGEIVANDISPKRL-KRLKENLKRLGVFN-VIVI 141 (283)
T ss_dssp EEEHHHHHHHHHHHH---TTTTTSEEEESSCTTSHHHHHHHHHTTTTSEEEEEESSHHHH-HHHHHHHHHTT-SS-EEEE
T ss_pred EEecccccccccccc---cccccccccccccCCCCceeeeeecccchhHHHHhccCHHHH-HHHHHHHHhcCCce-EEEE
Confidence 445555555554443 34578899999999999998888876 47899999999876 77778887777632 1222
Q ss_pred eeecCCCCCC-CCCCccEEEEcc------cccCCc---------ChH----HHHHHHHHHHHhc----CCCCceEee
Q 026036 134 KHSWGDAFPI-PNPDWDLILASD------ILLYVK---------QYS----NLIKSLSVLLKSY----KPKDSQVGH 186 (244)
Q Consensus 134 ~~~~~~~~~~-~~~~fD~I~~~~------~l~~~~---------~~~----~l~~~l~~~~~~l----k~gG~~~~~ 186 (244)
..+.....+. ....||.|+.-. ++..+. ... .-.+.|+.+.+.+ ||||+++.+
T Consensus 142 ~~D~~~~~~~~~~~~fd~VlvDaPCSg~G~i~r~p~~~~~~~~~~~~~l~~~Q~~iL~~a~~~~~~~~k~gG~lvYs 218 (283)
T PF01189_consen 142 NADARKLDPKKPESKFDRVLVDAPCSGLGTIRRNPDIKWRRSPEDIEKLAELQREILDNAAKLLNIDFKPGGRLVYS 218 (283)
T ss_dssp ESHHHHHHHHHHTTTEEEEEEECSCCCGGGTTTCTTHHHHE-TTHHHHHHHHHHHHHHHHHHCEHHHBEEEEEEEEE
T ss_pred eeccccccccccccccchhhcCCCccchhhhhhccchhhcccccccchHHHHHHHHHHHHHHhhcccccCCCeEEEE
Confidence 1111111111 123599998721 111111 111 1236778888999 999998777
|
In the archaea and bacteria, they are annotated as putative nucleolar protein, Sun (Fmu) family protein or tRNA/rRNA cytosine-C5-methylase. The majority have the S-adenosyl methionine (SAM) binding domain and are related to Escherichia coli Fmu (Sun) protein (16S rRNA m5C 967 methyltransferase) whose structure has been determined []. In the eukaryota, the majority are annotated as being 'hypothetical protein', nucleolar protein or the Nop2/Sun (Fmu) family. Unlike their bacterial homologues, few of the eukaryotic members in this family have a the SAM binding signature. Despite this, Saccharomyces cerevisiae (Baker's yeast) Nop2p is a probable RNA m5C methyltransferase []. It is essential for processing and maturation of 27S pre-rRNA and large ribosomal subunit biogenesis []; localized to the nucleolus and is essential for viability []. Reduced Nop2p expression limits yeast growth and decreases levels of mature 60S ribosomal subunits while altering rRNA processing []. There is substantial identity between Nop2p and Homo sapiens (Human) p120 (NOL1), which is also called the proliferation-associated nucleolar antigen [, ].; PDB: 3M4X_A 2FRX_B 2YXL_A 1IXK_A 1SQG_A 1SQF_A 3M6U_B 3M6V_B 3M6W_A 3M6X_A .... |
| >COG1064 AdhP Zn-dependent alcohol dehydrogenases [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.25 E-value=0.0027 Score=53.67 Aligned_cols=138 Identities=14% Similarity=0.039 Sum_probs=80.7
Q ss_pred CcccCCeEEEeCCC-CcHHHHHHHHhCCCeEEEEeCChHHHHHHHHHhHHhcCCCCCcceEeeecCC--CCCCCCCCccE
Q 026036 74 EWIERRRCIELGSG-TGALAIFLRKAMNLDITTSDYNDQEIEDNIAYNSTTNGITPALPHIKHSWGD--AFPIPNPDWDL 150 (244)
Q Consensus 74 ~~~~~~~VLdlG~G-~G~~~~~~a~~~~~~v~~~D~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~fD~ 150 (244)
...+|.+|+=.|+| .|.+++-+|+..+++|+++|.+++.+ +.+++--.. ....+.+ ..+...+.||+
T Consensus 163 ~~~pG~~V~I~G~GGlGh~avQ~Aka~ga~Via~~~~~~K~-e~a~~lGAd---------~~i~~~~~~~~~~~~~~~d~ 232 (339)
T COG1064 163 NVKPGKWVAVVGAGGLGHMAVQYAKAMGAEVIAITRSEEKL-ELAKKLGAD---------HVINSSDSDALEAVKEIADA 232 (339)
T ss_pred CCCCCCEEEEECCcHHHHHHHHHHHHcCCeEEEEeCChHHH-HHHHHhCCc---------EEEEcCCchhhHHhHhhCcE
Confidence 46689999999986 55677788887789999999999875 444432111 1122211 11111224999
Q ss_pred EEEcccccCCcChHHHHHHHHHHHHhcCCCCceEee-ccc-ccCC-C--CCCCCCCCeEEEeeeeccCccchhhHHHHHh
Q 026036 151 ILASDILLYVKQYSNLIKSLSVLLKSYKPKDSQVGH-LTK-NEQG-E--GTEGLPWPAFLMSWRRRIGKEDETIFFTSCE 225 (244)
Q Consensus 151 I~~~~~l~~~~~~~~l~~~l~~~~~~lk~gG~~~~~-~~~-~~~~-~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 225 (244)
|+..-. + .++....+.|++||+++++ .+. .... . ..+......+..+..-. ..+.+++++++.
T Consensus 233 ii~tv~-------~---~~~~~~l~~l~~~G~~v~vG~~~~~~~~~~~~~~li~~~~~i~GS~~g~--~~d~~e~l~f~~ 300 (339)
T COG1064 233 IIDTVG-------P---ATLEPSLKALRRGGTLVLVGLPGGGPIPLLPAFLLILKEISIVGSLVGT--RADLEEALDFAA 300 (339)
T ss_pred EEECCC-------h---hhHHHHHHHHhcCCEEEEECCCCCcccCCCCHHHhhhcCeEEEEEecCC--HHHHHHHHHHHH
Confidence 986311 2 6667788999999998887 221 1111 0 11111222222222222 233578888888
Q ss_pred hcCCeEEE
Q 026036 226 NAGLEVKH 233 (244)
Q Consensus 226 ~~Gf~v~~ 233 (244)
+.+...+-
T Consensus 301 ~g~Ikp~i 308 (339)
T COG1064 301 EGKIKPEI 308 (339)
T ss_pred hCCceeeE
Confidence 88876554
|
|
| >KOG1331 consensus Predicted methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.24 E-value=0.00069 Score=55.24 Aligned_cols=114 Identities=14% Similarity=0.168 Sum_probs=75.3
Q ss_pred cceeechHHHHHHHHhhccCcccCCeEEEeCCCCcHHHHHHHHhCCCeEEEEeCChHHHHHHHHHhHHhcCCCCCcceEe
Q 026036 55 ANFLWPGTFSFAEWLMHHREWIERRRCIELGSGTGALAIFLRKAMNLDITTSDYNDQEIEDNIAYNSTTNGITPALPHIK 134 (244)
Q Consensus 55 ~~~~w~~~~~l~~~~~~~~~~~~~~~VLdlG~G~G~~~~~~a~~~~~~v~~~D~~~~~l~~~~~~~~~~~~~~~~~~~~~ 134 (244)
....||....+.+.. ..+..++|+|||.|-... ....+.+++.|++...+ ..+++. +. ..+.
T Consensus 29 r~~~Wp~v~qfl~~~------~~gsv~~d~gCGngky~~---~~p~~~~ig~D~c~~l~-~~ak~~---~~-----~~~~ 90 (293)
T KOG1331|consen 29 RAAPWPMVRQFLDSQ------PTGSVGLDVGCGNGKYLG---VNPLCLIIGCDLCTGLL-GGAKRS---GG-----DNVC 90 (293)
T ss_pred ccCccHHHHHHHhcc------CCcceeeecccCCcccCc---CCCcceeeecchhhhhc-cccccC---CC-----ceee
Confidence 577888876655442 247899999999996431 11355799999987643 333221 11 0111
Q ss_pred eecCCCCCCCCCCccEEEEcccccCCcChHHHHHHHHHHHHhcCCCCceEee
Q 026036 135 HSWGDAFPIPNPDWDLILASDILLYVKQYSNLIKSLSVLLKSYKPKDSQVGH 186 (244)
Q Consensus 135 ~~~~~~~~~~~~~fD~I~~~~~l~~~~~~~~l~~~l~~~~~~lk~gG~~~~~ 186 (244)
....-.++....+||.+++..++++.....-...+++++.+.++|||...+-
T Consensus 91 ~ad~l~~p~~~~s~d~~lsiavihhlsT~~RR~~~l~e~~r~lrpgg~~lvy 142 (293)
T KOG1331|consen 91 RADALKLPFREESFDAALSIAVIHHLSTRERRERALEELLRVLRPGGNALVY 142 (293)
T ss_pred hhhhhcCCCCCCccccchhhhhhhhhhhHHHHHHHHHHHHHHhcCCCceEEE
Confidence 1111234566779999999999955555556678999999999999985544
|
|
| >PF02005 TRM: N2,N2-dimethylguanosine tRNA methyltransferase; InterPro: IPR002905 This enzyme 2 | Back alignment and domain information |
|---|
Probab=97.22 E-value=0.00063 Score=58.69 Aligned_cols=102 Identities=16% Similarity=0.119 Sum_probs=67.8
Q ss_pred cCCeEEEeCCCCcHHHHHHHHhC--CCeEEEEeCChHHHHHHHHHhHHhcCCCC-CcceEeeecCCCCCCCCCCccEEEE
Q 026036 77 ERRRCIELGSGTGALAIFLRKAM--NLDITTSDYNDQEIEDNIAYNSTTNGITP-ALPHIKHSWGDAFPIPNPDWDLILA 153 (244)
Q Consensus 77 ~~~~VLdlG~G~G~~~~~~a~~~--~~~v~~~D~~~~~l~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~fD~I~~ 153 (244)
.+.+|||-=||||.=++-.+... ..+|++.|+|++++ +.+++|+..|+++. ++.....+....+......||+|=.
T Consensus 49 ~~~~~lDalaasGvR~iRy~~E~~~~~~v~~NDi~~~a~-~~i~~N~~~N~~~~~~~~v~~~DAn~ll~~~~~~fD~IDl 127 (377)
T PF02005_consen 49 GPIRVLDALAASGVRGIRYAKELAGVDKVTANDISPEAV-ELIKRNLELNGLEDERIEVSNMDANVLLYSRQERFDVIDL 127 (377)
T ss_dssp S-EEEEETT-TTSHHHHHHHHH-SSECEEEEEES-HHHH-HHHHHHHHHCT-SGCCEEEEES-HHHHHCHSTT-EEEEEE
T ss_pred CCceEEeccccccHHHHHHHHHcCCCCEEEEecCCHHHH-HHHHHhHhhccccCceEEEehhhHHHHhhhccccCCEEEe
Confidence 34599999999999999888873 46899999999987 89999999999965 2222221211112223568998754
Q ss_pred cccccCCcChHHHHHHHHHHHHhcCCCCceEee
Q 026036 154 SDILLYVKQYSNLIKSLSVLLKSYKPKDSQVGH 186 (244)
Q Consensus 154 ~~~l~~~~~~~~l~~~l~~~~~~lk~gG~~~~~ 186 (244)
|++ ......+..+.+.++.||.+.++
T Consensus 128 -DPf------GSp~pfldsA~~~v~~gGll~vT 153 (377)
T PF02005_consen 128 -DPF------GSPAPFLDSALQAVKDGGLLCVT 153 (377)
T ss_dssp ---S------S--HHHHHHHHHHEEEEEEEEEE
T ss_pred -CCC------CCccHhHHHHHHHhhcCCEEEEe
Confidence 665 22337778888999999988888
|
1.1.32 from EC uses S-adenosyl-L-methionine to methylate tRNA: |
| >cd00315 Cyt_C5_DNA_methylase Cytosine-C5 specific DNA methylases; Methyl transfer reactions play an important role in many aspects of biology | Back alignment and domain information |
|---|
Probab=97.19 E-value=0.021 Score=47.33 Aligned_cols=70 Identities=20% Similarity=0.151 Sum_probs=46.4
Q ss_pred eEEEeCCCCcHHHHHHHHhCCCeEEEEeCChHHHHHHHHHhHHhcCCCCCcceEeeecCCCCCCC-CCCccEEEEcccc
Q 026036 80 RCIELGSGTGALAIFLRKAMNLDITTSDYNDQEIEDNIAYNSTTNGITPALPHIKHSWGDAFPIP-NPDWDLILASDIL 157 (244)
Q Consensus 80 ~VLdlG~G~G~~~~~~a~~~~~~v~~~D~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~fD~I~~~~~l 157 (244)
+|+||.||.|.++..+...+...|.++|+++.++ +..+.|...... ..+..+..... ...+|++++..+.
T Consensus 2 ~v~dLFsG~Gg~~~gl~~~G~~~v~a~e~~~~a~-~~~~~N~~~~~~-------~~Di~~~~~~~~~~~~D~l~~gpPC 72 (275)
T cd00315 2 RVIDLFAGIGGFRLGLEKAGFEIVAANEIDKSAA-ETYEANFPNKLI-------EGDITKIDEKDFIPDIDLLTGGFPC 72 (275)
T ss_pred cEEEEccCcchHHHHHHHcCCEEEEEEeCCHHHH-HHHHHhCCCCCc-------cCccccCchhhcCCCCCEEEeCCCC
Confidence 7999999999999888776555689999999886 666666432111 11111111111 3469999997765
|
Cytosine-specific DNA methylases are found both in prokaryotes and eukaryotes. DNA methylation, or the covalent addition of a methyl group to cytosine within the context of the CpG dinucleotide, has profound effects on the mammalian genome. These effects include transcriptional repression via inhibition of transcription factor binding or the recruitment of methyl-binding proteins and their associated chromatin remodeling factors, X chromosome inactivation, imprinting and the suppression of parasitic DNA sequences. DNA methylation is also essential for proper embryonic development and is an important player in both DNA repair and genome stability. |
| >COG3129 Predicted SAM-dependent methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.16 E-value=0.0012 Score=52.23 Aligned_cols=97 Identities=15% Similarity=0.180 Sum_probs=58.8
Q ss_pred HHHHHHHhhccC--cccCCeEEEeCCCCcHHH-HHHHHhCCCeEEEEeCChHHHHHHHHHhHHhc-CCCCCcceEeeecC
Q 026036 63 FSFAEWLMHHRE--WIERRRCIELGSGTGALA-IFLRKAMNLDITTSDYNDQEIEDNIAYNSTTN-GITPALPHIKHSWG 138 (244)
Q Consensus 63 ~~l~~~~~~~~~--~~~~~~VLdlG~G~G~~~-~~~a~~~~~~v~~~D~~~~~l~~~~~~~~~~~-~~~~~~~~~~~~~~ 138 (244)
..+++.+..... ..++.++||||.|.-.+= +.=...++.+.+|+|+++.++ +.++.++..| +++..+......-.
T Consensus 62 h~laDLL~s~~g~~~~~~i~~LDIGvGAnCIYPliG~~eYgwrfvGseid~~sl-~sA~~ii~~N~~l~~~I~lr~qk~~ 140 (292)
T COG3129 62 HHLADLLASTSGQIPGKNIRILDIGVGANCIYPLIGVHEYGWRFVGSEIDSQSL-SSAKAIISANPGLERAIRLRRQKDS 140 (292)
T ss_pred HHHHHHHHhcCCCCCcCceEEEeeccCcccccccccceeecceeecCccCHHHH-HHHHHHHHcCcchhhheeEEeccCc
Confidence 355666554432 235668999987755331 111233478899999999887 7788788777 55443333221111
Q ss_pred C-CC---CCCCCCccEEEEcccccCC
Q 026036 139 D-AF---PIPNPDWDLILASDILLYV 160 (244)
Q Consensus 139 ~-~~---~~~~~~fD~I~~~~~l~~~ 160 (244)
+ .+ -...+.||+++||.++|.+
T Consensus 141 ~~if~giig~nE~yd~tlCNPPFh~s 166 (292)
T COG3129 141 DAIFNGIIGKNERYDATLCNPPFHDS 166 (292)
T ss_pred cccccccccccceeeeEecCCCcchh
Confidence 1 11 1235689999999998443
|
|
| >PF03059 NAS: Nicotianamine synthase protein; InterPro: IPR004298 Nicotianamine synthase 2 | Back alignment and domain information |
|---|
Probab=97.15 E-value=0.0035 Score=51.61 Aligned_cols=103 Identities=17% Similarity=0.168 Sum_probs=53.4
Q ss_pred CeEEEeCCCCcHH-HHHHHHhC--CCeEEEEeCChHHHHHHHHHhHH-hcCCCCCcceEeeecCCCCCCCCCCccEEEEc
Q 026036 79 RRCIELGSGTGAL-AIFLRKAM--NLDITTSDYNDQEIEDNIAYNST-TNGITPALPHIKHSWGDAFPIPNPDWDLILAS 154 (244)
Q Consensus 79 ~~VLdlG~G~G~~-~~~~a~~~--~~~v~~~D~~~~~l~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~fD~I~~~ 154 (244)
.+|+=||||.=-+ ++.+++.. +..|+++|++++++ +.+++-+. ..++..++..+..+..+. ......||+|+.+
T Consensus 122 ~rVaFIGSGPLPlT~i~la~~~~~~~~v~~iD~d~~A~-~~a~~lv~~~~~L~~~m~f~~~d~~~~-~~dl~~~DvV~lA 199 (276)
T PF03059_consen 122 SRVAFIGSGPLPLTSIVLAKQHGPGARVHNIDIDPEAN-ELARRLVASDLGLSKRMSFITADVLDV-TYDLKEYDVVFLA 199 (276)
T ss_dssp -EEEEE---SS-HHHHHHH--HTT--EEEEEESSHHHH-HHHHHHHH---HH-SSEEEEES-GGGG--GG----SEEEE-
T ss_pred ceEEEEcCCCcchHHHHHHHHhCCCCeEEEEeCCHHHH-HHHHHHHhhcccccCCeEEEecchhcc-ccccccCCEEEEh
Confidence 5999999996544 56666543 56799999999986 66655444 334444444444333221 1223579999988
Q ss_pred ccccCCcChHHHHHHHHHHHHhcCCCCceEe
Q 026036 155 DILLYVKQYSNLIKSLSVLLKSYKPKDSQVG 185 (244)
Q Consensus 155 ~~l~~~~~~~~l~~~l~~~~~~lk~gG~~~~ 185 (244)
..+... .++-.+.+.++.+.++||.++++
T Consensus 200 alVg~~--~e~K~~Il~~l~~~m~~ga~l~~ 228 (276)
T PF03059_consen 200 ALVGMD--AEPKEEILEHLAKHMAPGARLVV 228 (276)
T ss_dssp TT-S------SHHHHHHHHHHHS-TTSEEEE
T ss_pred hhcccc--cchHHHHHHHHHhhCCCCcEEEE
Confidence 777222 22444999999999999886544
|
5.1.43 from EC catalyzes the trimerization of S-adenosylmethionine to yield one molecule of nicotianamine. Nicotianamine has an important role in plant iron uptake mechanisms. Plants adopt two strategies (termed I and II) of iron acquisition. Strategy I is adopted by all higher plants except graminaceous plants, which adopt strategy II [, ]. In strategy I plants, the role of nicotianamine is not fully determined: possible roles include the formation of more stable complexes with ferrous than with ferric ion, which might serve as a sensor of the physiological status of iron within a plant, or which might be involved in the transport of iron []. In strategy II (graminaceous) plants, nicotianamine is the key intermediate (and nicotianamine synthase the key enzyme) in the synthesis of the mugineic family (the only known family in plants) of phytosiderophores. Phytosiderophores are iron chelators whose secretion by the roots is greatly increased in instances of iron deficiency []. The 3D structures of five example NAS from Methanothermobacter thermautotrophicus reveal the monomer to consist of a five-helical bundle N-terminal domain on top of a classic Rossmann fold C-terminal domain. The N-terminal domain is unique to the NAS family, whereas the C-terminal domain is homologous to the class I family of SAM-dependent methyltransferases. An active site is created at the interface of the two domains, at the rim of a large cavity that corresponds to the nucleotide binding site such as is found in other proteins adopting a Rossmann fold [].; GO: 0030410 nicotianamine synthase activity, 0030418 nicotianamine biosynthetic process; PDB: 3O31_B 3FPH_A 3FPJ_A 3FPE_B 3FPF_B 3FPG_B. |
| >COG0286 HsdM Type I restriction-modification system methyltransferase subunit [Defense mechanisms] | Back alignment and domain information |
|---|
Probab=97.13 E-value=0.0089 Score=53.59 Aligned_cols=117 Identities=18% Similarity=0.183 Sum_probs=76.1
Q ss_pred HHHhhccCcccCCeEEEeCCCCcHHHHHHHHhC-----CCeEEEEeCChHHHHHHHHHhHHhcCCCCCcceEeeecCCCC
Q 026036 67 EWLMHHREWIERRRCIELGSGTGALAIFLRKAM-----NLDITTSDYNDQEIEDNIAYNSTTNGITPALPHIKHSWGDAF 141 (244)
Q Consensus 67 ~~~~~~~~~~~~~~VLdlG~G~G~~~~~~a~~~-----~~~v~~~D~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 141 (244)
+.+.....+.+..+|.|-.||+|.+.+..+... ...++|.|+++... ..++-|+-.+++.. .+....++.+
T Consensus 176 ~liv~~l~~~~~~~i~DpacGsgg~l~~a~~~~~~~~~~~~~yGqE~~~~t~-~l~~mN~~lhgi~~---~~~i~~~dtl 251 (489)
T COG0286 176 ELIVELLDPEPRNSIYDPACGSGGMLLQAAKYLKRHQDEIFIYGQEINDTTY-RLAKMNLILHGIEG---DANIRHGDTL 251 (489)
T ss_pred HHHHHHcCCCCCCeecCCCCchhHHHHHHHHHHHhhccceeEEEEeCCHHHH-HHHHHHHHHhCCCc---cccccccccc
Confidence 333333333456699999999998876665444 25699999999876 78888998888842 1122222221
Q ss_pred ----C---CCCCCccEEEEcccccCC----------------------cChHHHHHHHHHHHHhcCCCCceEeec
Q 026036 142 ----P---IPNPDWDLILASDILLYV----------------------KQYSNLIKSLSVLLKSYKPKDSQVGHL 187 (244)
Q Consensus 142 ----~---~~~~~fD~I~~~~~l~~~----------------------~~~~~l~~~l~~~~~~lk~gG~~~~~~ 187 (244)
. ....+||.|+++.++... .....-...++++...++|||+..++.
T Consensus 252 ~~~~~~~~~~~~~~D~viaNPPf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~af~~h~~~~l~~~g~aaivl 326 (489)
T COG0286 252 SNPKHDDKDDKGKFDFVIANPPFSGKGWGGDLLESEQDERFFFYGVFPTKNSADLAFLQHILYKLKPGGRAAIVL 326 (489)
T ss_pred cCCcccccCCccceeEEEeCCCCCccccccccccccccccccccCCCCCCCchHHHHHHHHHHhcCCCceEEEEe
Confidence 1 123579999998887300 001112577899999999998777663
|
|
| >COG5459 Predicted rRNA methylase [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=97.09 E-value=0.0012 Score=55.32 Aligned_cols=115 Identities=13% Similarity=0.073 Sum_probs=67.0
Q ss_pred CcccCCeEEEeCCCCcHHHHHHHHhC--CCeEEEEeCChHHHHHHHHHhHHhcCCCCCcceEeeecC-CCCCCC-CCCcc
Q 026036 74 EWIERRRCIELGSGTGALAIFLRKAM--NLDITTSDYNDQEIEDNIAYNSTTNGITPALPHIKHSWG-DAFPIP-NPDWD 149 (244)
Q Consensus 74 ~~~~~~~VLdlG~G~G~~~~~~a~~~--~~~v~~~D~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~-~~~fD 149 (244)
+.+...+|||+|.|.|....++-... -..++.++.|+. + ...-..+..|..+.......-+.. +.++++ ...|+
T Consensus 110 ~dfapqsiLDvG~GPgtgl~A~n~i~Pdl~sa~ile~sp~-l-rkV~~tl~~nv~t~~td~r~s~vt~dRl~lp~ad~yt 187 (484)
T COG5459 110 PDFAPQSILDVGAGPGTGLWALNDIWPDLKSAVILEASPA-L-RKVGDTLAENVSTEKTDWRASDVTEDRLSLPAADLYT 187 (484)
T ss_pred CCcCcchhhccCCCCchhhhhhcccCCCchhhhhhccCHH-H-HHHHHHHHhhcccccCCCCCCccchhccCCCccceee
Confidence 34566789999999887655543222 334777777774 2 222222233322111111111110 223332 23688
Q ss_pred EEEEcccccCCcChHHHHHHHHHHHHhcCCCCceEeecccc
Q 026036 150 LILASDILLYVKQYSNLIKSLSVLLKSYKPKDSQVGHLTKN 190 (244)
Q Consensus 150 ~I~~~~~l~~~~~~~~l~~~l~~~~~~lk~gG~~~~~~~~~ 190 (244)
+++..+-+-.......+...++.+-.++.|||.++++..+.
T Consensus 188 l~i~~~eLl~d~~ek~i~~~ie~lw~l~~~gg~lVivErGt 228 (484)
T COG5459 188 LAIVLDELLPDGNEKPIQVNIERLWNLLAPGGHLVIVERGT 228 (484)
T ss_pred hhhhhhhhccccCcchHHHHHHHHHHhccCCCeEEEEeCCC
Confidence 88888777555555567789999999999999999984443
|
|
| >PF06962 rRNA_methylase: Putative rRNA methylase; InterPro: IPR010719 This family contains a number of putative rRNA methylases | Back alignment and domain information |
|---|
Probab=97.06 E-value=0.0016 Score=47.91 Aligned_cols=86 Identities=14% Similarity=0.054 Sum_probs=53.2
Q ss_pred eEEEEeCChHHHHHHHHHhHHhcCCCCCcceEeeecCCCCCCCC-CCccEEEEcccccCCc-------ChHHHHHHHHHH
Q 026036 102 DITTSDYNDQEIEDNIAYNSTTNGITPALPHIKHSWGDAFPIPN-PDWDLILASDILLYVK-------QYSNLIKSLSVL 173 (244)
Q Consensus 102 ~v~~~D~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~fD~I~~~~~l~~~~-------~~~~l~~~l~~~ 173 (244)
+|++.|+.++++ ++.+++....+...++..+.-.-.+...... ++.|+++-|--. -+. ....-..+++.+
T Consensus 1 kVyaFDIQ~~Ai-~~T~~rL~~~~~~~~v~li~~sHe~l~~~i~~~~v~~~iFNLGY-LPggDk~i~T~~~TTl~Al~~a 78 (140)
T PF06962_consen 1 KVYAFDIQEEAI-ENTRERLEEAGLEDRVTLILDSHENLDEYIPEGPVDAAIFNLGY-LPGGDKSITTKPETTLKALEAA 78 (140)
T ss_dssp EEEEEES-HHHH-HHHHHHHHHTT-GSGEEEEES-GGGGGGT--S--EEEEEEEESB--CTS-TTSB--HHHHHHHHHHH
T ss_pred CEEEEECHHHHH-HHHHHHHHhcCCCCcEEEEECCHHHHHhhCccCCcCEEEEECCc-CCCCCCCCCcCcHHHHHHHHHH
Confidence 689999999998 8888888877775555544333322222233 379998887653 322 223445778888
Q ss_pred HHhcCCCCceEeeccc
Q 026036 174 LKSYKPKDSQVGHLTK 189 (244)
Q Consensus 174 ~~~lk~gG~~~~~~~~ 189 (244)
.+.|+|||.+.+++|.
T Consensus 79 l~lL~~gG~i~iv~Y~ 94 (140)
T PF06962_consen 79 LELLKPGGIITIVVYP 94 (140)
T ss_dssp HHHEEEEEEEEEEE--
T ss_pred HHhhccCCEEEEEEeC
Confidence 9999999998887443
|
; PDB: 3EEY_H 3LBY_A 3MTI_A. |
| >COG4627 Uncharacterized protein conserved in bacteria [Function unknown] | Back alignment and domain information |
|---|
Probab=97.05 E-value=0.0001 Score=54.44 Aligned_cols=92 Identities=13% Similarity=-0.029 Sum_probs=59.2
Q ss_pred CCCCCCCccEEEEcccccCCcChHHHHHHHHHHHHhcCCCCceEeecccccCCCCCCCC---CCCeEEEeeeeccCccch
Q 026036 141 FPIPNPDWDLILASDILLYVKQYSNLIKSLSVLLKSYKPKDSQVGHLTKNEQGEGTEGL---PWPAFLMSWRRRIGKEDE 217 (244)
Q Consensus 141 ~~~~~~~fD~I~~~~~l~~~~~~~~l~~~l~~~~~~lk~gG~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~ 217 (244)
..+.+++.|+|++.+++ .|........+++++++.|||||.+-+.++....-...... ....+...|-.+....+.
T Consensus 41 ~~F~dns~d~iyaeHvl-EHlt~~Eg~~alkechr~Lrp~G~LriAvPdl~f~~~~Y~~~vqvggpgpndhP~~r~v~t~ 119 (185)
T COG4627 41 SMFEDNSVDAIYAEHVL-EHLTYDEGTSALKECHRFLRPGGKLRIAVPDLKFLDWLYQHDVQVGGPGPNDHPLHRIVKTM 119 (185)
T ss_pred ccCCCcchHHHHHHHHH-HHHhHHHHHHHHHHHHHHhCcCcEEEEEcCCcchhHHHHhhhhhccCCCCCCCcHHHHHHHH
Confidence 45667899999999998 77888888999999999999999999997766433211100 000011101111111234
Q ss_pred hhHHHHHhhcCCeEEE
Q 026036 218 TIFFTSCENAGLEVKH 233 (244)
Q Consensus 218 ~~~~~~l~~~Gf~v~~ 233 (244)
+.+++...++||+++-
T Consensus 120 r~m~n~~m~~~~~~kl 135 (185)
T COG4627 120 RMMFNGFMDAGFVVKL 135 (185)
T ss_pred HHHHHHHHhhhheehh
Confidence 5566777788887763
|
|
| >COG4262 Predicted spermidine synthase with an N-terminal membrane domain [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.04 E-value=0.0066 Score=51.34 Aligned_cols=106 Identities=19% Similarity=0.184 Sum_probs=66.7
Q ss_pred cCCeEEEeCCCCcHHHHHHHHhC-CCeEEEEeCChHHHHHHHHHhHH---hcCCCCCcceEeeecCCCCC---CCCCCcc
Q 026036 77 ERRRCIELGSGTGALAIFLRKAM-NLDITTSDYNDQEIEDNIAYNST---TNGITPALPHIKHSWGDAFP---IPNPDWD 149 (244)
Q Consensus 77 ~~~~VLdlG~G~G~~~~~~a~~~-~~~v~~~D~~~~~l~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~---~~~~~fD 149 (244)
.-.+||=+|.|-|.-...+.+.. -.+|+.+|++|+|+ +.++++.. .|+-+..-+.++.-..|... .....||
T Consensus 289 ~a~~vLvlGGGDGLAlRellkyP~~~qI~lVdLDP~mi-ela~~~~vlr~~N~~sf~dpRv~Vv~dDAf~wlr~a~~~fD 367 (508)
T COG4262 289 GARSVLVLGGGDGLALRELLKYPQVEQITLVDLDPRMI-ELASHATVLRALNQGSFSDPRVTVVNDDAFQWLRTAADMFD 367 (508)
T ss_pred ccceEEEEcCCchHHHHHHHhCCCcceEEEEecCHHHH-HHhhhhhHhhhhccCCccCCeeEEEeccHHHHHHhhccccc
Confidence 34589999999999998887765 56899999999997 77764432 22222122233333333332 2345899
Q ss_pred EEEEcccccCCcChHHH-----HHHHHHHHHhcCCCCceEee
Q 026036 150 LILASDILLYVKQYSNL-----IKSLSVLLKSYKPKDSQVGH 186 (244)
Q Consensus 150 ~I~~~~~l~~~~~~~~l-----~~~l~~~~~~lk~gG~~~~~ 186 (244)
+||. |.. .+. .+.+ ...-.-+.+.|+++|.+++.
T Consensus 368 ~vIV-Dl~-DP~-tps~~rlYS~eFY~ll~~~l~e~Gl~VvQ 406 (508)
T COG4262 368 VVIV-DLP-DPS-TPSIGRLYSVEFYRLLSRHLAETGLMVVQ 406 (508)
T ss_pred EEEE-eCC-CCC-CcchhhhhhHHHHHHHHHhcCcCceEEEe
Confidence 9987 222 211 1111 24556678899999987776
|
|
| >PF13578 Methyltransf_24: Methyltransferase domain; PDB: 3SSO_A 3SSN_C 3SSM_D | Back alignment and domain information |
|---|
Probab=96.97 E-value=8.4e-05 Score=52.19 Aligned_cols=98 Identities=20% Similarity=0.270 Sum_probs=35.2
Q ss_pred EEeCCCCcHHHHHHHHhC---C-CeEEEEeCChHHHHHHHHHhHHhcCCCCCcceEeeecCCCCC-CCCCCccEEEEccc
Q 026036 82 IELGSGTGALAIFLRKAM---N-LDITTSDYNDQEIEDNIAYNSTTNGITPALPHIKHSWGDAFP-IPNPDWDLILASDI 156 (244)
Q Consensus 82 LdlG~G~G~~~~~~a~~~---~-~~v~~~D~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~fD~I~~~~~ 156 (244)
||+|+..|..+..+++.. + .+++++|..+. . +..++.++..+...++..+..+..+.++ ...+++|+|+. |.
T Consensus 1 lEiG~~~G~st~~l~~~~~~~~~~~~~~vD~~~~-~-~~~~~~~~~~~~~~~~~~~~g~s~~~l~~~~~~~~dli~i-Dg 77 (106)
T PF13578_consen 1 LEIGTYSGYSTLWLASALRDNGRGKLYSVDPFPG-D-EQAQEIIKKAGLSDRVEFIQGDSPDFLPSLPDGPIDLIFI-DG 77 (106)
T ss_dssp --------------------------EEEESS--------------GGG-BTEEEEES-THHHHHHHHH--EEEEEE-ES
T ss_pred CccccccccccccccccccccccCCEEEEECCCc-c-cccchhhhhcCCCCeEEEEEcCcHHHHHHcCCCCEEEEEE-CC
Confidence 699999998887766543 2 37999999984 1 2222222222332233333222211111 11468999887 44
Q ss_pred ccCCcChHHHHHHHHHHHHhcCCCCceEe
Q 026036 157 LLYVKQYSNLIKSLSVLLKSYKPKDSQVG 185 (244)
Q Consensus 157 l~~~~~~~~l~~~l~~~~~~lk~gG~~~~ 185 (244)
- | ..+.....++.+.+.++|||.+++
T Consensus 78 ~-H--~~~~~~~dl~~~~~~l~~ggviv~ 103 (106)
T PF13578_consen 78 D-H--SYEAVLRDLENALPRLAPGGVIVF 103 (106)
T ss_dssp ------HHHHHHHHHHHGGGEEEEEEEEE
T ss_pred C-C--CHHHHHHHHHHHHHHcCCCeEEEE
Confidence 3 1 235566788889999999997665
|
|
| >PF03141 Methyltransf_29: Putative S-adenosyl-L-methionine-dependent methyltransferase; InterPro: IPR004159 Members of this family of hypothetical plant proteins are putative methyltransferases | Back alignment and domain information |
|---|
Probab=96.92 E-value=0.00088 Score=58.79 Aligned_cols=100 Identities=17% Similarity=0.258 Sum_probs=67.0
Q ss_pred CeEEEeCCCCcHHHHHHHHhCCCeEEEEeCChHHHHHHHHHhHHhcCCCCCcceEeeecCCCCCCCCCCccEEEEccccc
Q 026036 79 RRCIELGSGTGALAIFLRKAMNLDITTSDYNDQEIEDNIAYNSTTNGITPALPHIKHSWGDAFPIPNPDWDLILASDILL 158 (244)
Q Consensus 79 ~~VLdlG~G~G~~~~~~a~~~~~~v~~~D~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fD~I~~~~~l~ 158 (244)
..|+|..+|.|.++.++... .|+....-+.. ..+.-.-+..-++ + -+-.+|.+.++.-+.+||+|.++.++=
T Consensus 367 RNVMDMnAg~GGFAAAL~~~---~VWVMNVVP~~-~~ntL~vIydRGL---I-G~yhDWCE~fsTYPRTYDLlHA~~lfs 438 (506)
T PF03141_consen 367 RNVMDMNAGYGGFAAALIDD---PVWVMNVVPVS-GPNTLPVIYDRGL---I-GVYHDWCEAFSTYPRTYDLLHADGLFS 438 (506)
T ss_pred eeeeeecccccHHHHHhccC---CceEEEecccC-CCCcchhhhhccc---c-hhccchhhccCCCCcchhheehhhhhh
Confidence 47999999999998877543 24444433211 0000011112222 1 235689999998889999999988873
Q ss_pred CCcChHHHHHHHHHHHHhcCCCCceEee
Q 026036 159 YVKQYSNLIKSLSVLLKSYKPKDSQVGH 186 (244)
Q Consensus 159 ~~~~~~~l~~~l~~~~~~lk~gG~~~~~ 186 (244)
.......+...+-++-|+|+|+|.+++-
T Consensus 439 ~~~~rC~~~~illEmDRILRP~G~~iiR 466 (506)
T PF03141_consen 439 LYKDRCEMEDILLEMDRILRPGGWVIIR 466 (506)
T ss_pred hhcccccHHHHHHHhHhhcCCCceEEEe
Confidence 3344567789999999999999987763
|
; GO: 0008168 methyltransferase activity |
| >COG1867 TRM1 N2,N2-dimethylguanosine tRNA methyltransferase [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=96.69 E-value=0.0082 Score=50.88 Aligned_cols=100 Identities=16% Similarity=0.098 Sum_probs=69.3
Q ss_pred CCeEEEeCCCCcHHHHHHHHhCCC-eEEEEeCChHHHHHHHHHhHHhcCCCCCcceEeeecCCCCCCCCCCccEEEEccc
Q 026036 78 RRRCIELGSGTGALAIFLRKAMNL-DITTSDYNDQEIEDNIAYNSTTNGITPALPHIKHSWGDAFPIPNPDWDLILASDI 156 (244)
Q Consensus 78 ~~~VLdlG~G~G~~~~~~a~~~~~-~v~~~D~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fD~I~~~~~ 156 (244)
..+|+|-=||||+=++-.+...+. +|++-|+|++++ +.+++|+..|.... ...+.-|....+......||+|= .|+
T Consensus 53 ~~~v~DalsatGiRgIRya~E~~~~~v~lNDisp~Av-elik~Nv~~N~~~~-~~v~n~DAN~lm~~~~~~fd~ID-iDP 129 (380)
T COG1867 53 PKRVLDALSATGIRGIRYAVETGVVKVVLNDISPKAV-ELIKENVRLNSGED-AEVINKDANALLHELHRAFDVID-IDP 129 (380)
T ss_pred CeEEeecccccchhHhhhhhhcCccEEEEccCCHHHH-HHHHHHHHhcCccc-ceeecchHHHHHHhcCCCccEEe-cCC
Confidence 679999999999999988877755 899999999997 89999999984321 12222111111222236799764 466
Q ss_pred ccCCcChHHHHHHHHHHHHhcCCCCceEee
Q 026036 157 LLYVKQYSNLIKSLSVLLKSYKPKDSQVGH 186 (244)
Q Consensus 157 l~~~~~~~~l~~~l~~~~~~lk~gG~~~~~ 186 (244)
+ - + ....+....+..+.||.+.++
T Consensus 130 F-G--S---PaPFlDaA~~s~~~~G~l~vT 153 (380)
T COG1867 130 F-G--S---PAPFLDAALRSVRRGGLLCVT 153 (380)
T ss_pred C-C--C---CchHHHHHHHHhhcCCEEEEE
Confidence 5 2 2 225566677778889988777
|
|
| >KOG2671 consensus Putative RNA methylase [Replication, recombination and repair] | Back alignment and domain information |
|---|
Probab=96.54 E-value=0.0061 Score=51.09 Aligned_cols=114 Identities=15% Similarity=0.096 Sum_probs=73.6
Q ss_pred cCcccCCeEEEeCCCCcHHHHHHHHhCCCeEEEEeCChHHHH------HHHHHhHHhcCCCC-CcceEeeecCCCCCCCC
Q 026036 73 REWIERRRCIELGSGTGALAIFLRKAMNLDITTSDYNDQEIE------DNIAYNSTTNGITP-ALPHIKHSWGDAFPIPN 145 (244)
Q Consensus 73 ~~~~~~~~VLdlG~G~G~~~~~~a~~~~~~v~~~D~~~~~l~------~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~ 145 (244)
....+|+-|.|=-.|||.+.+.+|. +|+.|.|+||+-.++. ...+.|.+..+.+. -+..+..|..++.-...
T Consensus 204 Amv~pGdivyDPFVGTGslLvsaa~-FGa~viGtDIDyr~vragrg~~~si~aNFkQYg~~~~fldvl~~D~sn~~~rsn 282 (421)
T KOG2671|consen 204 AMVKPGDIVYDPFVGTGSLLVSAAH-FGAYVIGTDIDYRTVRAGRGEDESIKANFKQYGSSSQFLDVLTADFSNPPLRSN 282 (421)
T ss_pred hccCCCCEEecCccccCceeeehhh-hcceeeccccchheeecccCCCcchhHhHHHhCCcchhhheeeecccCcchhhc
Confidence 4567899999999999999888875 5899999999987653 12344544444322 13334444443322224
Q ss_pred CCccEEEEcccccCCc------------------------------ChH-HHHHHHHHHHHhcCCCCceEeecc
Q 026036 146 PDWDLILASDILLYVK------------------------------QYS-NLIKSLSVLLKSYKPKDSQVGHLT 188 (244)
Q Consensus 146 ~~fD~I~~~~~l~~~~------------------------------~~~-~l~~~l~~~~~~lk~gG~~~~~~~ 188 (244)
..||.|+|- +-|-.. +.. -+.+.|.-.++.|..||++++-.+
T Consensus 283 ~~fDaIvcD-PPYGVRe~~rk~~~k~~~r~~~~~~~~~h~p~~~~ysl~~~v~dll~fss~~L~~ggrlv~w~p 355 (421)
T KOG2671|consen 283 LKFDAIVCD-PPYGVREGARKTGKKKSVRTTEESSRGDHYPSTEQYSLSSLVYDLLCFSSRRLVDGGRLVFWLP 355 (421)
T ss_pred ceeeEEEeC-CCcchhhhhhhhcccCcccCcccccccccCCccchhHHHHHHhhHHHhhHhhhhcCceEEEecC
Confidence 479999993 334210 111 123566777899999999988855
|
|
| >KOG1122 consensus tRNA and rRNA cytosine-C5-methylase (nucleolar protein NOL1/NOP2) [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=96.43 E-value=0.018 Score=49.68 Aligned_cols=111 Identities=15% Similarity=0.134 Sum_probs=69.9
Q ss_pred CcccCCeEEEeCCCCcHHHHHHHHhC--CCeEEEEeCChHHHHHHHHHhHHhcCCCCCcceEeeecCCC-CCCCCCCccE
Q 026036 74 EWIERRRCIELGSGTGALAIFLRKAM--NLDITTSDYNDQEIEDNIAYNSTTNGITPALPHIKHSWGDA-FPIPNPDWDL 150 (244)
Q Consensus 74 ~~~~~~~VLdlG~G~G~~~~~~a~~~--~~~v~~~D~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~fD~ 150 (244)
.+-+|.||||++|-.|.=+.++|... ...|++.|.+..-+ ..++.|+...++.+.+ ....+..+. .....++||-
T Consensus 238 ~Pq~gERIlDmcAAPGGKTt~IAalMkn~G~I~AnD~n~~r~-~~l~~n~~rlGv~nti-v~n~D~~ef~~~~~~~~fDR 315 (460)
T KOG1122|consen 238 DPQPGERILDMCAAPGGKTTHIAALMKNTGVIFANDSNENRL-KSLKANLHRLGVTNTI-VSNYDGREFPEKEFPGSFDR 315 (460)
T ss_pred CCCCCCeecchhcCCCchHHHHHHHHcCCceEEecccchHHH-HHHHHHHHHhCCCceE-EEccCcccccccccCcccce
Confidence 45689999999998887666665554 56799999999876 7788888887764322 111221111 0111237998
Q ss_pred EEE----cc--cccCCc------------ChHHH-HHHHHHHHHhcCCCCceEee
Q 026036 151 ILA----SD--ILLYVK------------QYSNL-IKSLSVLLKSYKPKDSQVGH 186 (244)
Q Consensus 151 I~~----~~--~l~~~~------------~~~~l-~~~l~~~~~~lk~gG~~~~~ 186 (244)
|+. +. +++... ....+ .+.|.....++++||.++.+
T Consensus 316 VLLDAPCSGtgvi~K~~~vkt~k~~~di~~~~~LQr~LllsAi~lv~~GGvLVYS 370 (460)
T KOG1122|consen 316 VLLDAPCSGTGVISKDQSVKTNKTVKDILRYAHLQRELLLSAIDLVKAGGVLVYS 370 (460)
T ss_pred eeecCCCCCCcccccccccccchhHHHHHHhHHHHHHHHHHHHhhccCCcEEEEE
Confidence 885 22 222111 11112 25667778899999988877
|
|
| >KOG2497 consensus Predicted methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=96.38 E-value=0.0042 Score=50.72 Aligned_cols=47 Identities=13% Similarity=0.177 Sum_probs=40.5
Q ss_pred CCCcceeechHHHHHHHHhhccCcccCCeEEEeCCCCcHHHHHHHHh
Q 026036 52 QLNANFLWPGTFSFAEWLMHHREWIERRRCIELGSGTGALAIFLRKA 98 (244)
Q Consensus 52 ~~~~~~~w~~~~~l~~~~~~~~~~~~~~~VLdlG~G~G~~~~~~a~~ 98 (244)
..+|..+|.++..|.+++.+++...++.++.++|||.+......++.
T Consensus 65 ~~tg~~~w~~al~L~~~l~~~~d~~~~~~v~~l~~gi~~~~~~~a~~ 111 (262)
T KOG2497|consen 65 ARTGLSVWESALSLEADLRDKPDLSSELTVEELGCDIALKHVLAARV 111 (262)
T ss_pred HHhccccchHHHHHHHHHhhCcccccccchHhhccCHHHHHHHHHhc
Confidence 34589999999999999999998888999999999999988555543
|
|
| >PF03269 DUF268: Caenorhabditis protein of unknown function, DUF268; InterPro: IPR004951 This family consists of proteins of unknown function found in Caenorhabditis species | Back alignment and domain information |
|---|
Probab=96.33 E-value=0.0061 Score=45.62 Aligned_cols=103 Identities=12% Similarity=0.115 Sum_probs=58.0
Q ss_pred CCeEEEeCCCCcHHHHHHHHhCCCeEEEEeCChHHHHHHHHHhHHhcCCCCCcceE-eeecCCCCCCCCCCccEEEEccc
Q 026036 78 RRRCIELGSGTGALAIFLRKAMNLDITTSDYNDQEIEDNIAYNSTTNGITPALPHI-KHSWGDAFPIPNPDWDLILASDI 156 (244)
Q Consensus 78 ~~~VLdlG~G~G~~~~~~a~~~~~~v~~~D~~~~~l~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~fD~I~~~~~ 156 (244)
|++++=+|+..=.+=..+.+.++++|..++.++-.+.+-.+.. + ..+ ..+.........++||.+.|..+
T Consensus 2 ~~~g~V~GS~~PwvEv~aL~~GA~~iltveyn~L~i~~~~~dr-----~----ssi~p~df~~~~~~y~~~fD~~as~~s 72 (177)
T PF03269_consen 2 GKSGLVVGSMQPWVEVMALQHGAAKILTVEYNKLEIQEEFRDR-----L----SSILPVDFAKNWQKYAGSFDFAASFSS 72 (177)
T ss_pred CceEEEEecCCchhhHHHHHcCCceEEEEeecccccCcccccc-----c----ccccHHHHHHHHHHhhccchhhheech
Confidence 5677778776444444444555778999998762221111111 1 000 00000111112457999988877
Q ss_pred ccCCc---------ChHHHHHHHHHHHHhcCCCCceEeecccc
Q 026036 157 LLYVK---------QYSNLIKSLSVLLKSYKPKDSQVGHLTKN 190 (244)
Q Consensus 157 l~~~~---------~~~~l~~~l~~~~~~lk~gG~~~~~~~~~ 190 (244)
+ .|. +..--.+.+.++.++|||||.+++.++-.
T Consensus 73 i-Eh~GLGRYGDPidp~Gdl~~m~~i~~vLK~GG~L~l~vPvG 114 (177)
T PF03269_consen 73 I-EHFGLGRYGDPIDPIGDLRAMAKIKCVLKPGGLLFLGVPVG 114 (177)
T ss_pred h-ccccccccCCCCCccccHHHHHHHHHhhccCCeEEEEeecC
Confidence 7 331 11122377888999999999999996655
|
|
| >PF07091 FmrO: Ribosomal RNA methyltransferase (FmrO); PDB: 3LCU_A 3LCV_B 3FRH_A 3FRI_A 3B89_A 3FZG_A | Back alignment and domain information |
|---|
Probab=96.25 E-value=0.035 Score=44.84 Aligned_cols=75 Identities=17% Similarity=0.185 Sum_probs=47.8
Q ss_pred cCCeEEEeCCCCcHHHHHHHHhC-CCeEEEEeCChHHHHHHHHHhHHhcCCCCCcceEeeecCCCCCC-CCCCccEEEEc
Q 026036 77 ERRRCIELGSGTGALAIFLRKAM-NLDITTSDYNDQEIEDNIAYNSTTNGITPALPHIKHSWGDAFPI-PNPDWDLILAS 154 (244)
Q Consensus 77 ~~~~VLdlG~G~G~~~~~~a~~~-~~~v~~~D~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~fD~I~~~ 154 (244)
...+|+|||||.=-+++...... +..++|.|++..++ +.+.......+.. ....+.|.+.. +....|+.+..
T Consensus 105 ~p~sVlDigCGlNPlalp~~~~~~~a~Y~a~DID~~~v-e~l~~~l~~l~~~-----~~~~v~Dl~~~~~~~~~DlaLll 178 (251)
T PF07091_consen 105 PPDSVLDIGCGLNPLALPWMPEAPGATYIAYDIDSQLV-EFLNAFLAVLGVP-----HDARVRDLLSDPPKEPADLALLL 178 (251)
T ss_dssp --SEEEEET-TTCHHHHHTTTSSTT-EEEEEESBHHHH-HHHHHHHHHTT-C-----EEEEEE-TTTSHTTSEESEEEEE
T ss_pred CCchhhhhhccCCceehhhcccCCCcEEEEEeCCHHHH-HHHHHHHHhhCCC-----cceeEeeeeccCCCCCcchhhHH
Confidence 46799999999998887765443 57899999999876 7777766655552 22233344433 34568999885
Q ss_pred ccc
Q 026036 155 DIL 157 (244)
Q Consensus 155 ~~l 157 (244)
=++
T Consensus 179 K~l 181 (251)
T PF07091_consen 179 KTL 181 (251)
T ss_dssp T-H
T ss_pred HHH
Confidence 554
|
|
| >KOG0024 consensus Sorbitol dehydrogenase [Secondary metabolites biosynthesis, transport and catabolism] | Back alignment and domain information |
|---|
Probab=96.23 E-value=0.055 Score=45.25 Aligned_cols=102 Identities=15% Similarity=0.138 Sum_probs=64.3
Q ss_pred hhccCcccCCeEEEeCCC-CcHHHHHHHHhC-CCeEEEEeCChHHHHHHHHHhHHhcCCCCCcceEee-e-cC---CCCC
Q 026036 70 MHHREWIERRRCIELGSG-TGALAIFLRKAM-NLDITTSDYNDQEIEDNIAYNSTTNGITPALPHIKH-S-WG---DAFP 142 (244)
Q Consensus 70 ~~~~~~~~~~~VLdlG~G-~G~~~~~~a~~~-~~~v~~~D~~~~~l~~~~~~~~~~~~~~~~~~~~~~-~-~~---~~~~ 142 (244)
........|.+||=+|+| .|+++...|+.. ..+|+.+|+++..+ +.+++ ...... ..... . .. +...
T Consensus 162 cr~~~vk~Gs~vLV~GAGPIGl~t~l~Aka~GA~~VVi~d~~~~Rl-e~Ak~-~Ga~~~----~~~~~~~~~~~~~~~v~ 235 (354)
T KOG0024|consen 162 CRRAGVKKGSKVLVLGAGPIGLLTGLVAKAMGASDVVITDLVANRL-ELAKK-FGATVT----DPSSHKSSPQELAELVE 235 (354)
T ss_pred hhhcCcccCCeEEEECCcHHHHHHHHHHHHcCCCcEEEeecCHHHH-HHHHH-hCCeEE----eeccccccHHHHHHHHH
Confidence 334567789999999999 788888887776 67899999999877 66665 221111 00000 0 00 0000
Q ss_pred --CCCCCccEEEEcccccCCcChHHHHHHHHHHHHhcCCCCceEee
Q 026036 143 --IPNPDWDLILASDILLYVKQYSNLIKSLSVLLKSYKPKDSQVGH 186 (244)
Q Consensus 143 --~~~~~fD~I~~~~~l~~~~~~~~l~~~l~~~~~~lk~gG~~~~~ 186 (244)
.....+|+.+-..-+ + .+++.....++.||.+++.
T Consensus 236 ~~~g~~~~d~~~dCsG~------~---~~~~aai~a~r~gGt~vlv 272 (354)
T KOG0024|consen 236 KALGKKQPDVTFDCSGA------E---VTIRAAIKATRSGGTVVLV 272 (354)
T ss_pred hhccccCCCeEEEccCc------h---HHHHHHHHHhccCCEEEEe
Confidence 112348887753332 2 6677778899999997766
|
|
| >PRK01747 mnmC bifunctional tRNA (mnm(5)s(2)U34)-methyltransferase/FAD-dependent cmnm(5)s(2)U34 oxidoreductase; Reviewed | Back alignment and domain information |
|---|
Probab=96.20 E-value=0.022 Score=53.12 Aligned_cols=127 Identities=16% Similarity=0.179 Sum_probs=73.2
Q ss_pred CCeEEEeCCCCcHHHHHHHHhC-------------CCeEEEEeCCh---HHHHHHHH----------HhHHh-----cCC
Q 026036 78 RRRCIELGSGTGALAIFLRKAM-------------NLDITTSDYND---QEIEDNIA----------YNSTT-----NGI 126 (244)
Q Consensus 78 ~~~VLdlG~G~G~~~~~~a~~~-------------~~~v~~~D~~~---~~l~~~~~----------~~~~~-----~~~ 126 (244)
.-+|+|+|-|+|+..+.+.+.. ..+++.+|..+ +.+.+..+ ..... .++
T Consensus 58 ~~~i~e~gfG~G~N~l~~~~~~~~~~~~~~~~~~~~l~~~s~E~~p~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~g~ 137 (662)
T PRK01747 58 RFVIAETGFGTGLNFLATWQAFDQFRQRHPPARLKRLHFISFEKFPLTRADLARAHQHWPELAPLAEQLQAQWPLLLPGC 137 (662)
T ss_pred cEEEEecCcchHHHHHHHHHHHHHhhhhCCCCCCceEEEEEEECCCCCHHHHHHHHhhCcccHHHHHHHHHhCCccCCCc
Confidence 3589999999999877665322 23789999754 22212111 10000 011
Q ss_pred ------CCCcceEeeecCCC---CCCCCCCccEEEEcccccCCcChHHH--HHHHHHHHHhcCCCCceEeecccccCCCC
Q 026036 127 ------TPALPHIKHSWGDA---FPIPNPDWDLILASDILLYVKQYSNL--IKSLSVLLKSYKPKDSQVGHLTKNEQGEG 195 (244)
Q Consensus 127 ------~~~~~~~~~~~~~~---~~~~~~~fD~I~~~~~l~~~~~~~~l--~~~l~~~~~~lk~gG~~~~~~~~~~~~~~ 195 (244)
.+++ ...+-++|. ++.....+|+++. |.+ .....+++ ...++.++++++|||+++--
T Consensus 138 ~~~~~~~~~~-~l~l~~gd~~~~~~~~~~~~d~~~l-D~F-sP~~np~~W~~~~~~~l~~~~~~~~~~~t~--------- 205 (662)
T PRK01747 138 HRLLFDDGRV-TLDLWFGDANELLPQLDARADAWFL-DGF-APAKNPDMWSPNLFNALARLARPGATLATF--------- 205 (662)
T ss_pred eEEEecCCcE-EEEEEecCHHHHHHhccccccEEEe-CCC-CCccChhhccHHHHHHHHHHhCCCCEEEEe---------
Confidence 0000 223444543 2222346898886 554 44333433 28899999999999965421
Q ss_pred CCCCCCCeEEEeeeeccCccchhhHHHHHhhcCCeEEEec
Q 026036 196 TEGLPWPAFLMSWRRRIGKEDETIFFTSCENAGLEVKHLG 235 (244)
Q Consensus 196 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gf~v~~~~ 235 (244)
.. ...+..-|.++||+|++..
T Consensus 206 -----------------t~--a~~vr~~l~~~GF~v~~~~ 226 (662)
T PRK01747 206 -----------------TS--AGFVRRGLQEAGFTVRKVK 226 (662)
T ss_pred -----------------eh--HHHHHHHHHHcCCeeeecC
Confidence 11 2566788999999998663
|
|
| >KOG2198 consensus tRNA cytosine-5-methylases and related enzymes of the NOL1/NOP2/sun superfamily [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=96.16 E-value=0.048 Score=46.33 Aligned_cols=109 Identities=12% Similarity=0.081 Sum_probs=60.8
Q ss_pred CcccCCeEEEeCCCCcHHHHHHHHhC-C----CeEEEEeCChHHHHHHHHHhHH-hcCCCCCcceEeeecC--CCC----
Q 026036 74 EWIERRRCIELGSGTGALAIFLRKAM-N----LDITTSDYNDQEIEDNIAYNST-TNGITPALPHIKHSWG--DAF---- 141 (244)
Q Consensus 74 ~~~~~~~VLdlG~G~G~~~~~~a~~~-~----~~v~~~D~~~~~l~~~~~~~~~-~~~~~~~~~~~~~~~~--~~~---- 141 (244)
.+.+|.+|||+++-.|.=+..+.+.. . ..|++-|.+..-+ ..+..... .+.. .+.....+.. ...
T Consensus 152 ~v~p~~~VLDmCAAPG~Kt~qLLeal~~~~~~g~vvaND~d~~R~-~~L~~q~~~l~~~--~~~v~~~~~~~~p~~~~~~ 228 (375)
T KOG2198|consen 152 GVKPGDKVLDMCAAPGGKTAQLLEALHKDPTRGYVVANDVDPKRL-NMLVHQLKRLPSP--NLLVTNHDASLFPNIYLKD 228 (375)
T ss_pred ccCCCCeeeeeccCCCccHHHHHHHHhcCCCCCeeEecccCHHHH-HHHHHHHhccCCc--ceeeecccceecccccccc
Confidence 45689999999999987776555543 2 2799999988643 22222221 1111 1111111100 000
Q ss_pred --CCCCCCccEEEEcccccCC--------------------cChHH-HHHHHHHHHHhcCCCCceEee
Q 026036 142 --PIPNPDWDLILASDILLYV--------------------KQYSN-LIKSLSVLLKSYKPKDSQVGH 186 (244)
Q Consensus 142 --~~~~~~fD~I~~~~~l~~~--------------------~~~~~-l~~~l~~~~~~lk~gG~~~~~ 186 (244)
+.....||-|++ ||-..+ ...+. ..+.+++-.++||+||+++.+
T Consensus 229 ~~~~~~~~fDrVLv-DVPCS~Dgt~rk~~~i~~~~w~~~~~~~L~~LQ~~iL~rgl~lLk~GG~lVYS 295 (375)
T KOG2198|consen 229 GNDKEQLKFDRVLV-DVPCSGDGTLRKNPNIWKEGWKTQRALGLHALQLRILRRGLRLLKVGGRLVYS 295 (375)
T ss_pred CchhhhhhcceeEE-ecccCCCcccccCchHhhhhhhhhhccCChHHHHHHHHHHHHHhcCCCEEEEe
Confidence 112236888887 322111 11222 236788889999999998877
|
|
| >PRK09424 pntA NAD(P) transhydrogenase subunit alpha; Provisional | Back alignment and domain information |
|---|
Probab=96.15 E-value=0.076 Score=47.75 Aligned_cols=99 Identities=16% Similarity=0.248 Sum_probs=62.2
Q ss_pred cccCCeEEEeCCC-CcHHHHHHHHhCCCeEEEEeCChHHHHHHHHHhHHhcCCCCCcceEeeecCC--------------
Q 026036 75 WIERRRCIELGSG-TGALAIFLRKAMNLDITTSDYNDQEIEDNIAYNSTTNGITPALPHIKHSWGD-------------- 139 (244)
Q Consensus 75 ~~~~~~VLdlG~G-~G~~~~~~a~~~~~~v~~~D~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~-------------- 139 (244)
..++.+|+=+||| .|..++..|+..+++|+++|.+++.+ +.++. .+.. .+..+..+
T Consensus 162 ~~pg~kVlViGaG~iGL~Ai~~Ak~lGA~V~a~D~~~~rl-e~aes----lGA~----~v~i~~~e~~~~~~gya~~~s~ 232 (509)
T PRK09424 162 KVPPAKVLVIGAGVAGLAAIGAAGSLGAIVRAFDTRPEVA-EQVES----MGAE----FLELDFEEEGGSGDGYAKVMSE 232 (509)
T ss_pred CcCCCEEEEECCcHHHHHHHHHHHHCCCEEEEEeCCHHHH-HHHHH----cCCe----EEEeccccccccccchhhhcch
Confidence 3478999999999 67788888888888999999999765 44433 1220 11111100
Q ss_pred C--------CCCCCCCccEEEEcccccCCcChHHHHHH-HHHHHHhcCCCCceEee
Q 026036 140 A--------FPIPNPDWDLILASDILLYVKQYSNLIKS-LSVLLKSYKPKDSQVGH 186 (244)
Q Consensus 140 ~--------~~~~~~~fD~I~~~~~l~~~~~~~~l~~~-l~~~~~~lk~gG~~~~~ 186 (244)
. +......+|+|+..-.. .....+ .+ .++..+.+||||+++..
T Consensus 233 ~~~~~~~~~~~~~~~gaDVVIetag~-pg~~aP---~lit~~~v~~mkpGgvIVdv 284 (509)
T PRK09424 233 EFIKAEMALFAEQAKEVDIIITTALI-PGKPAP---KLITAEMVASMKPGSVIVDL 284 (509)
T ss_pred hHHHHHHHHHHhccCCCCEEEECCCC-CcccCc---chHHHHHHHhcCCCCEEEEE
Confidence 0 00001358999986554 111122 44 37888999999987766
|
|
| >KOG2078 consensus tRNA modification enzyme [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=96.12 E-value=0.0037 Score=53.71 Aligned_cols=80 Identities=16% Similarity=0.204 Sum_probs=58.6
Q ss_pred CCcceeechHHHHHHHHhhccCcccCCeEEEeCCCCcHHHHHHHHhCCCeEEEEeCChHHHHHHHHHhHHhcCCCCC-cc
Q 026036 53 LNANFLWPGTFSFAEWLMHHREWIERRRCIELGSGTGALAIFLRKAMNLDITTSDYNDQEIEDNIAYNSTTNGITPA-LP 131 (244)
Q Consensus 53 ~~~~~~w~~~~~l~~~~~~~~~~~~~~~VLdlG~G~G~~~~~~a~~~~~~v~~~D~~~~~l~~~~~~~~~~~~~~~~-~~ 131 (244)
..|...|.+-... +...-..-..+|..|.|+.||.|-+++.++++ +++|++.|.+++++ +.++.|+..|.+... +.
T Consensus 226 DfskVYWnsRL~~-Eherlsg~fk~gevv~D~FaGvGPfa~Pa~kK-~crV~aNDLNpesi-k~Lk~ni~lNkv~~~~ie 302 (495)
T KOG2078|consen 226 DFSKVYWNSRLSH-EHERLSGLFKPGEVVCDVFAGVGPFALPAAKK-GCRVYANDLNPESI-KWLKANIKLNKVDPSAIE 302 (495)
T ss_pred ecceEEeeccchh-HHHHHhhccCCcchhhhhhcCcCccccchhhc-CcEEEecCCCHHHH-HHHHHhccccccchhhee
Confidence 3477789853322 22111123457889999999999999999988 59999999999998 999999998887543 44
Q ss_pred eEee
Q 026036 132 HIKH 135 (244)
Q Consensus 132 ~~~~ 135 (244)
.+.+
T Consensus 303 i~Nm 306 (495)
T KOG2078|consen 303 IFNM 306 (495)
T ss_pred eecc
Confidence 3333
|
|
| >COG4798 Predicted methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=96.11 E-value=0.11 Score=40.43 Aligned_cols=140 Identities=15% Similarity=0.151 Sum_probs=72.1
Q ss_pred CcccCCeEEEeCCCCcHHHHHHHHhCCC--eEEEEeCChHH---------HHHHHHHhHHhcCCCCCcceEeeecCCCCC
Q 026036 74 EWIERRRCIELGSGTGALAIFLRKAMNL--DITTSDYNDQE---------IEDNIAYNSTTNGITPALPHIKHSWGDAFP 142 (244)
Q Consensus 74 ~~~~~~~VLdlG~G~G~~~~~~a~~~~~--~v~~~D~~~~~---------l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 142 (244)
.+.+|.+|+|+=-|.|..+..++...+. .|++.-..+.. +....++....|.- .+.-.... +.
T Consensus 45 Glkpg~tVid~~PGgGy~TrI~s~~vgp~G~Vy~~~p~e~~~~~~~~~~r~~~~~~e~~~aN~e-----~~~~~~~A-~~ 118 (238)
T COG4798 45 GLKPGATVIDLIPGGGYFTRIFSPAVGPKGKVYAYVPAELTKFAKREGPRLNAAAREPVYANVE-----VIGKPLVA-LG 118 (238)
T ss_pred ccCCCCEEEEEecCCccHhhhhchhcCCceeEEEecchhhcccccchhhhhhhhhhhhhhhhhh-----hhCCcccc-cC
Confidence 3568999999999999999888776543 45554433320 11111111111111 11000000 01
Q ss_pred CCCCCccEEEE--------cccccCCcChHHHHHHHHHHHHhcCCCCceEeecccccCCCCCCCCCCCeEEEeeeeccCc
Q 026036 143 IPNPDWDLILA--------SDILLYVKQYSNLIKSLSVLLKSYKPKDSQVGHLTKNEQGEGTEGLPWPAFLMSWRRRIGK 214 (244)
Q Consensus 143 ~~~~~fD~I~~--------~~~l~~~~~~~~l~~~l~~~~~~lk~gG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 214 (244)
..+..|++.. +-.+ + .....+..+++++.|||||.+.+............ .-. ...+.
T Consensus 119 -~pq~~d~~~~~~~yhdmh~k~i-~---~~~A~~vna~vf~~LKPGGv~~V~dH~a~pG~~~~-----dt~--~~~ri-- 184 (238)
T COG4798 119 -APQKLDLVPTAQNYHDMHNKNI-H---PATAAKVNAAVFKALKPGGVYLVEDHRADPGSGLS-----DTI--TLHRI-- 184 (238)
T ss_pred -CCCcccccccchhhhhhhcccc-C---cchHHHHHHHHHHhcCCCcEEEEEeccccCCCChh-----hhh--hhccc--
Confidence 1223444433 2222 2 23455888999999999999888743333221110 000 01111
Q ss_pred cchhhHHHHHhhcCCeEEEe
Q 026036 215 EDETIFFTSCENAGLEVKHL 234 (244)
Q Consensus 215 ~~~~~~~~~l~~~Gf~v~~~ 234 (244)
+........+++||..+--
T Consensus 185 -~~a~V~a~veaaGFkl~ae 203 (238)
T COG4798 185 -DPAVVIAEVEAAGFKLEAE 203 (238)
T ss_pred -ChHHHHHHHHhhcceeeee
Confidence 2356778899999987643
|
|
| >KOG1596 consensus Fibrillarin and related nucleolar RNA-binding proteins [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=96.08 E-value=0.027 Score=45.08 Aligned_cols=124 Identities=12% Similarity=0.130 Sum_probs=70.3
Q ss_pred cceeechH-HHHHHHHh---hccCcccCCeEEEeCCCCcHHHHHHHHhCC--CeEEEEeCChHH---HHHHHHHhHHhcC
Q 026036 55 ANFLWPGT-FSFAEWLM---HHREWIERRRCIELGSGTGALAIFLRKAMN--LDITTSDYNDQE---IEDNIAYNSTTNG 125 (244)
Q Consensus 55 ~~~~w~~~-~~l~~~~~---~~~~~~~~~~VLdlG~G~G~~~~~~a~~~~--~~v~~~D~~~~~---l~~~~~~~~~~~~ 125 (244)
...+|..- -.||.-+. ++.++.+|.+||=||+++|..-.+.+.-.+ .-|++++.|+.. |...+++
T Consensus 130 EyRVWnPfrSKLAA~I~gGvdnihikpGsKVLYLGAasGttVSHvSDiVGpeG~VYAVEfs~rsGRdL~nmAkk------ 203 (317)
T KOG1596|consen 130 EYRVWNPFRSKLAAGILGGVDNIHIKPGSKVLYLGAASGTTVSHVSDIVGPEGCVYAVEFSHRSGRDLINMAKK------ 203 (317)
T ss_pred EEEEeChHHHHHHHHhhcCccceeecCCceEEEeeccCCceeehhhcccCCCceEEEEEecccchHHHHHHhhc------
Confidence 56678663 24555443 345678999999999999987777765543 349999998742 3222221
Q ss_pred CCCCcceEeeecCCCCCCCCCCcc-EEEEcccccCCcChHHHHHHH-HHHHHhcCCCCceEeecccc
Q 026036 126 ITPALPHIKHSWGDAFPIPNPDWD-LILASDILLYVKQYSNLIKSL-SVLLKSYKPKDSQVGHLTKN 190 (244)
Q Consensus 126 ~~~~~~~~~~~~~~~~~~~~~~fD-~I~~~~~l~~~~~~~~l~~~l-~~~~~~lk~gG~~~~~~~~~ 190 (244)
.++.++.++ |. .. ..+|- +|=|.|++|.....++..+.+ -+....||+||.|++++...
T Consensus 204 RtNiiPIiE----DA-rh-P~KYRmlVgmVDvIFaDvaqpdq~RivaLNA~~FLk~gGhfvisikan 264 (317)
T KOG1596|consen 204 RTNIIPIIE----DA-RH-PAKYRMLVGMVDVIFADVAQPDQARIVALNAQYFLKNGGHFVISIKAN 264 (317)
T ss_pred cCCceeeec----cC-CC-chheeeeeeeEEEEeccCCCchhhhhhhhhhhhhhccCCeEEEEEecc
Confidence 112223331 11 11 11121 222444444433344444433 46678899999999884433
|
|
| >KOG1227 consensus Putative methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=96.07 E-value=0.0095 Score=49.04 Aligned_cols=95 Identities=15% Similarity=0.182 Sum_probs=66.5
Q ss_pred ceeechHHHHHHHH--hhc----cCcccCCeEEEeCCCCcHHHH-HHHHhCCCeEEEEeCChHHHHHHHHHhHHhcCCCC
Q 026036 56 NFLWPGTFSFAEWL--MHH----REWIERRRCIELGSGTGALAI-FLRKAMNLDITTSDYNDQEIEDNIAYNSTTNGITP 128 (244)
Q Consensus 56 ~~~w~~~~~l~~~~--~~~----~~~~~~~~VLdlG~G~G~~~~-~~a~~~~~~v~~~D~~~~~l~~~~~~~~~~~~~~~ 128 (244)
.+.|+.+..|-.+= .+. .-...+..|.|+-+|.|++++ ++...++..|++.|.++..+ +.+++|+..|+...
T Consensus 167 ~~~~d~t~~MFS~GN~~EK~Rv~~~sc~~eviVDLYAGIGYFTlpflV~agAk~V~A~EwNp~sv-EaLrR~~~~N~V~~ 245 (351)
T KOG1227|consen 167 TQIWDPTKTMFSRGNIKEKKRVLNTSCDGEVIVDLYAGIGYFTLPFLVTAGAKTVFACEWNPWSV-EALRRNAEANNVMD 245 (351)
T ss_pred EEEechhhhhhhcCcHHHHHHhhhcccccchhhhhhcccceEEeehhhccCccEEEEEecCHHHH-HHHHHHHHhcchHH
Confidence 67888887776551 111 112356789999999999998 67677788899999999987 89999999998755
Q ss_pred CcceEeeecCCCCCCCCCCccEEEE
Q 026036 129 ALPHIKHSWGDAFPIPNPDWDLILA 153 (244)
Q Consensus 129 ~~~~~~~~~~~~~~~~~~~fD~I~~ 153 (244)
++..+..+.. .+.+....|-|..
T Consensus 246 r~~i~~gd~R--~~~~~~~AdrVnL 268 (351)
T KOG1227|consen 246 RCRITEGDNR--NPKPRLRADRVNL 268 (351)
T ss_pred HHHhhhcccc--ccCccccchheee
Confidence 5444433322 2334456676655
|
|
| >KOG1253 consensus tRNA methyltransferase [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=96.05 E-value=0.0052 Score=53.84 Aligned_cols=102 Identities=17% Similarity=0.141 Sum_probs=72.8
Q ss_pred cCCeEEEeCCCCcHHHHHHHHhC--CCeEEEEeCChHHHHHHHHHhHHhcCCCCCcceEeeecCCC---CCCCCCCccEE
Q 026036 77 ERRRCIELGSGTGALAIFLRKAM--NLDITTSDYNDQEIEDNIAYNSTTNGITPALPHIKHSWGDA---FPIPNPDWDLI 151 (244)
Q Consensus 77 ~~~~VLdlG~G~G~~~~~~a~~~--~~~v~~~D~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~fD~I 151 (244)
++.+|||-=|+||+-++-.|+.. -.+|++.|.++.++ +..++|+..|+....+.....+.... -+.....||+|
T Consensus 109 ~~l~vLealsAtGlrslRya~El~~v~~v~AnD~~~~aV-~~i~~Nv~~N~v~~ive~~~~DA~~lM~~~~~~~~~FDvI 187 (525)
T KOG1253|consen 109 KSLRVLEALSATGLRSLRYAKELPGVRQVVANDLNENAV-TSIQRNVELNGVEDIVEPHHSDANVLMYEHPMVAKFFDVI 187 (525)
T ss_pred CcchHHHHhhhhhHHHHHHHHHhcchhhhcccCCCHHHH-HHHHhhhhhcCchhhcccccchHHHHHHhccccccccceE
Confidence 56799999999999999888776 45799999999987 88999999997754433332222111 11224689987
Q ss_pred EEcccccCCcChHHHHHHHHHHHHhcCCCCceEee
Q 026036 152 LASDILLYVKQYSNLIKSLSVLLKSYKPKDSQVGH 186 (244)
Q Consensus 152 ~~~~~l~~~~~~~~l~~~l~~~~~~lk~gG~~~~~ 186 (244)
=. |++ -. . ...|..+.+.++.||.+.++
T Consensus 188 DL-DPy-Gs--~---s~FLDsAvqav~~gGLL~vT 215 (525)
T KOG1253|consen 188 DL-DPY-GS--P---SPFLDSAVQAVRDGGLLCVT 215 (525)
T ss_pred ec-CCC-CC--c---cHHHHHHHHHhhcCCEEEEE
Confidence 54 664 22 2 26677788888899988887
|
|
| >PRK09880 L-idonate 5-dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=95.86 E-value=0.12 Score=44.05 Aligned_cols=98 Identities=14% Similarity=0.148 Sum_probs=55.0
Q ss_pred CcccCCeEEEeCCC-CcHHHHHHHHhCCC-eEEEEeCChHHHHHHHHHhHHhcCCCCCcceEeeecCCCCCCCCCCccEE
Q 026036 74 EWIERRRCIELGSG-TGALAIFLRKAMNL-DITTSDYNDQEIEDNIAYNSTTNGITPALPHIKHSWGDAFPIPNPDWDLI 151 (244)
Q Consensus 74 ~~~~~~~VLdlG~G-~G~~~~~~a~~~~~-~v~~~D~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fD~I 151 (244)
...++.+||=.||| .|..++.+++..+. +|+++|.+++.+ +.+++. +....+.....+..+.. ...+.+|+|
T Consensus 166 ~~~~g~~VlV~G~G~vG~~aiqlak~~G~~~Vi~~~~~~~~~-~~a~~l----Ga~~vi~~~~~~~~~~~-~~~g~~D~v 239 (343)
T PRK09880 166 GDLQGKRVFVSGVGPIGCLIVAAVKTLGAAEIVCADVSPRSL-SLAREM----GADKLVNPQNDDLDHYK-AEKGYFDVS 239 (343)
T ss_pred CCCCCCEEEEECCCHHHHHHHHHHHHcCCcEEEEEeCCHHHH-HHHHHc----CCcEEecCCcccHHHHh-ccCCCCCEE
Confidence 34478899988874 45555666666666 699999998765 444331 22100000000000101 112358988
Q ss_pred EEcccccCCcChHHHHHHHHHHHHhcCCCCceEee
Q 026036 152 LASDILLYVKQYSNLIKSLSVLLKSYKPKDSQVGH 186 (244)
Q Consensus 152 ~~~~~l~~~~~~~~l~~~l~~~~~~lk~gG~~~~~ 186 (244)
+-. . ..+ .+++...+.+++||++++.
T Consensus 240 id~--~----G~~---~~~~~~~~~l~~~G~iv~~ 265 (343)
T PRK09880 240 FEV--S----GHP---SSINTCLEVTRAKGVMVQV 265 (343)
T ss_pred EEC--C----CCH---HHHHHHHHHhhcCCEEEEE
Confidence 752 2 112 4566678889999998776
|
|
| >COG1568 Predicted methyltransferases [General function prediction only] | Back alignment and domain information |
|---|
Probab=95.84 E-value=0.036 Score=45.26 Aligned_cols=99 Identities=15% Similarity=0.154 Sum_probs=68.1
Q ss_pred cccCCeEEEeCCCCcHHHHHHHHhC-CCeEEEEeCChHHHHHHHHHhHHhcCCCCCcceEeeecCCCCCCC-CCCccEEE
Q 026036 75 WIERRRCIELGSGTGALAIFLRKAM-NLDITTSDYNDQEIEDNIAYNSTTNGITPALPHIKHSWGDAFPIP-NPDWDLIL 152 (244)
Q Consensus 75 ~~~~~~VLdlG~G~G~~~~~~a~~~-~~~v~~~D~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~fD~I~ 152 (244)
...|++|+=+| ---+.+++++..+ ..+|..+|+++..+ ....+-+...+. +++..+.++..+++|.. ..+||+.+
T Consensus 150 DL~gK~I~vvG-DDDLtsia~aLt~mpk~iaVvDIDERli-~fi~k~aee~g~-~~ie~~~~Dlr~plpe~~~~kFDvfi 226 (354)
T COG1568 150 DLEGKEIFVVG-DDDLTSIALALTGMPKRIAVVDIDERLI-KFIEKVAEELGY-NNIEAFVFDLRNPLPEDLKRKFDVFI 226 (354)
T ss_pred CcCCCeEEEEc-CchhhHHHHHhcCCCceEEEEechHHHH-HHHHHHHHHhCc-cchhheeehhcccChHHHHhhCCeee
Confidence 45788999998 6667777776655 78899999999854 777776666666 33566777777776643 45899876
Q ss_pred EcccccCCcChHHHHHHHHHHHHhcCCC
Q 026036 153 ASDILLYVKQYSNLIKSLSVLLKSYKPK 180 (244)
Q Consensus 153 ~~~~l~~~~~~~~l~~~l~~~~~~lk~g 180 (244)
. |+. +....+...+.+=...||.-
T Consensus 227 T-DPp---eTi~alk~FlgRGI~tLkg~ 250 (354)
T COG1568 227 T-DPP---ETIKALKLFLGRGIATLKGE 250 (354)
T ss_pred c-Cch---hhHHHHHHHHhccHHHhcCC
Confidence 5 554 33455556665555666654
|
|
| >TIGR02822 adh_fam_2 zinc-binding alcohol dehydrogenase family protein | Back alignment and domain information |
|---|
Probab=95.83 E-value=0.13 Score=43.57 Aligned_cols=92 Identities=11% Similarity=-0.050 Sum_probs=56.6
Q ss_pred cCcccCCeEEEeCCC-CcHHHHHHHHhCCCeEEEEeCChHHHHHHHHHhHHhcCCCCCcceEeeecCCCCCCCCCCccEE
Q 026036 73 REWIERRRCIELGSG-TGALAIFLRKAMNLDITTSDYNDQEIEDNIAYNSTTNGITPALPHIKHSWGDAFPIPNPDWDLI 151 (244)
Q Consensus 73 ~~~~~~~~VLdlG~G-~G~~~~~~a~~~~~~v~~~D~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fD~I 151 (244)
....+|.+||=.|+| .|..+..+|+..+.+|++++.+++.. +.+++ .+... .+ +..+. ..+.+|++
T Consensus 161 ~~~~~g~~VlV~G~g~iG~~a~~~a~~~G~~vi~~~~~~~~~-~~a~~----~Ga~~---vi--~~~~~---~~~~~d~~ 227 (329)
T TIGR02822 161 ASLPPGGRLGLYGFGGSAHLTAQVALAQGATVHVMTRGAAAR-RLALA----LGAAS---AG--GAYDT---PPEPLDAA 227 (329)
T ss_pred cCCCCCCEEEEEcCCHHHHHHHHHHHHCCCeEEEEeCChHHH-HHHHH----hCCce---ec--ccccc---CcccceEE
Confidence 345678899999974 44555666777788899999988654 44433 22210 11 10011 12357877
Q ss_pred EEcccccCCcChHHHHHHHHHHHHhcCCCCceEee
Q 026036 152 LASDILLYVKQYSNLIKSLSVLLKSYKPKDSQVGH 186 (244)
Q Consensus 152 ~~~~~l~~~~~~~~l~~~l~~~~~~lk~gG~~~~~ 186 (244)
+-.+.. . .++....+.+++||++++.
T Consensus 228 i~~~~~------~---~~~~~~~~~l~~~G~~v~~ 253 (329)
T TIGR02822 228 ILFAPA------G---GLVPPALEALDRGGVLAVA 253 (329)
T ss_pred EECCCc------H---HHHHHHHHhhCCCcEEEEE
Confidence 654432 2 4567788899999998765
|
Members of this model form a distinct subset of the larger family of oxidoreductases that includes zinc-binding alcohol dehydrogenases and NADPH:quinone reductases (pfam00107). The gene neighborhood of members of this family is not conserved and it appears that no members are characterized. The sequence of the family includes 6 invariant cysteine residues and one invariant histidine. It appears that no member is characterized. |
| >PF04989 CmcI: Cephalosporin hydroxylase; InterPro: IPR007072 This entry contains Rhamnosyl O-methyltransferase which catalyses the O-methylation of the hydroxyl group located on C-2 of the first rhamnosyl residue linked to the phenolic group of glycosylated phenolphthiocerol dimycocerosates (PGL) and p-hydroxybenzoic acid derivatives (p-HBAD) [] | Back alignment and domain information |
|---|
Probab=95.79 E-value=0.11 Score=40.98 Aligned_cols=103 Identities=14% Similarity=0.084 Sum_probs=48.8
Q ss_pred cCCeEEEeCCCCcHHHHHHHHhC-----CCeEEEEeCChHHHHHHHHHhHHhcCCCCCcceEeeecCCCC-----CCC--
Q 026036 77 ERRRCIELGSGTGALAIFLRKAM-----NLDITTSDYNDQEIEDNIAYNSTTNGITPALPHIKHSWGDAF-----PIP-- 144 (244)
Q Consensus 77 ~~~~VLdlG~G~G~~~~~~a~~~-----~~~v~~~D~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~-- 144 (244)
+.+.|+|+|.=.|.-++..|... .++|+++|++.... .+.......+..++..++.+..+.. ...
T Consensus 32 kPd~IIE~Gi~~GGSli~~A~ml~~~~~~~~VigiDIdir~~---~~~a~e~hp~~~rI~~i~Gds~d~~~~~~v~~~~~ 108 (206)
T PF04989_consen 32 KPDLIIETGIAHGGSLIFWASMLELLGGKGKVIGIDIDIRPH---NRKAIESHPMSPRITFIQGDSIDPEIVDQVRELAS 108 (206)
T ss_dssp --SEEEEE--TTSHHHHHHHHHHHHTT---EEEEEES-GTT-----S-GGGG----TTEEEEES-SSSTHHHHTSGSS--
T ss_pred CCCeEEEEecCCCchHHHHHHHHHHhCCCceEEEEeCCcchh---chHHHhhccccCceEEEECCCCCHHHHHHHHHhhc
Confidence 45799999998887777665432 57899999965322 1112232233344555554443321 111
Q ss_pred CCCccEEEEcccccCCcChHHHHHHHHHHHHhcCCCCceEee
Q 026036 145 NPDWDLILASDILLYVKQYSNLIKSLSVLLKSYKPKDSQVGH 186 (244)
Q Consensus 145 ~~~fD~I~~~~~l~~~~~~~~l~~~l~~~~~~lk~gG~~~~~ 186 (244)
..... +++-|.-+.+ ....+.|+.....+++|+.+++.
T Consensus 109 ~~~~v-lVilDs~H~~---~hvl~eL~~y~plv~~G~Y~IVe 146 (206)
T PF04989_consen 109 PPHPV-LVILDSSHTH---EHVLAELEAYAPLVSPGSYLIVE 146 (206)
T ss_dssp --SSE-EEEESS-------SSHHHHHHHHHHT--TT-EEEET
T ss_pred cCCce-EEEECCCccH---HHHHHHHHHhCccCCCCCEEEEE
Confidence 12233 4445665333 33448888899999999977765
|
Members of this family are about 220 amino acids long. It also includes the CmcI protein O85726 from SWISSPROT, which is presumed to represent the cephalosporin-7--hydroxylase []. However this has not been experimentally verified.; GO: 0008168 methyltransferase activity, 0008610 lipid biosynthetic process; PDB: 2BR4_B 2BR3_E 2BR5_E 2BM8_J 2BM9_E. |
| >KOG4058 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=95.73 E-value=0.084 Score=39.07 Aligned_cols=52 Identities=13% Similarity=0.171 Sum_probs=39.4
Q ss_pred ccCCeEEEeCCCCcHHHHHHHHhCCCeEEEEeCChHHHHHHHHHhHHhcCCCC
Q 026036 76 IERRRCIELGSGTGALAIFLRKAMNLDITTSDYNDQEIEDNIAYNSTTNGITP 128 (244)
Q Consensus 76 ~~~~~VLdlG~G~G~~~~~~a~~~~~~v~~~D~~~~~l~~~~~~~~~~~~~~~ 128 (244)
.+..+.+|||+|-|.+-+.+++.+....+|+++++=.+ ...+..+...+...
T Consensus 71 n~~GklvDlGSGDGRiVlaaar~g~~~a~GvELNpwLV-aysrl~a~R~g~~k 122 (199)
T KOG4058|consen 71 NPKGKLVDLGSGDGRIVLAAARCGLRPAVGVELNPWLV-AYSRLHAWRAGCAK 122 (199)
T ss_pred CCCCcEEeccCCCceeehhhhhhCCCcCCceeccHHHH-HHHHHHHHHHhccc
Confidence 34459999999999999999888667899999999643 55555555555533
|
|
| >PF04445 SAM_MT: Putative SAM-dependent methyltransferase; InterPro: IPR007536 This family of proteins is functionally uncharacterised | Back alignment and domain information |
|---|
Probab=95.71 E-value=0.057 Score=43.34 Aligned_cols=80 Identities=18% Similarity=0.280 Sum_probs=39.3
Q ss_pred CeEEEeCCCCcHHHHHHHHhCCCeEEEEeCChHH---HHHHHHHhHHhcCC-CCCcceEeeecCCCC---CCCCCCccEE
Q 026036 79 RRCIELGSGTGALAIFLRKAMNLDITTSDYNDQE---IEDNIAYNSTTNGI-TPALPHIKHSWGDAF---PIPNPDWDLI 151 (244)
Q Consensus 79 ~~VLdlG~G~G~~~~~~a~~~~~~v~~~D~~~~~---l~~~~~~~~~~~~~-~~~~~~~~~~~~~~~---~~~~~~fD~I 151 (244)
.+|||.-+|-|.-++.++.. +++|++++-|+-. +.+.+++....... ......+++..++.. ...+.+||+|
T Consensus 77 ~~VLDaTaGLG~Da~vlA~~-G~~V~~lErspvia~Ll~dGL~r~~~~~~~~~~~~~ri~l~~~d~~~~L~~~~~s~DVV 155 (234)
T PF04445_consen 77 PSVLDATAGLGRDAFVLASL-GCKVTGLERSPVIAALLKDGLKRAQQDPELLAEAMRRIQLIHGDALEYLRQPDNSFDVV 155 (234)
T ss_dssp --EEETT-TTSHHHHHHHHH-T--EEEEE--HHHHHHHHHHHHHHHHSTTTHHHHHHHEEEEES-CCCHCCCHSS--SEE
T ss_pred CEEEECCCcchHHHHHHHcc-CCeEEEEECCHHHHHHHHHHHHHHHhCcHhHHHHHhCCEEEcCCHHHHHhhcCCCCCEE
Confidence 38999999999999998865 7899999999853 22222222111111 011234555555543 3346799999
Q ss_pred EEcccccCC
Q 026036 152 LASDILLYV 160 (244)
Q Consensus 152 ~~~~~l~~~ 160 (244)
+. |++|.+
T Consensus 156 Y~-DPMFp~ 163 (234)
T PF04445_consen 156 YF-DPMFPE 163 (234)
T ss_dssp EE---S---
T ss_pred EE-CCCCCC
Confidence 98 555454
|
; PDB: 2PGX_A 2OYR_A 2R6Z_A 2PKW_A. |
| >PF11599 AviRa: RRNA methyltransferase AviRa; InterPro: IPR024268 This family of proteins includes the methyltransferase AviRa from Streptomyces viridochromogenes | Back alignment and domain information |
|---|
Probab=95.60 E-value=0.052 Score=42.73 Aligned_cols=60 Identities=17% Similarity=0.069 Sum_probs=38.2
Q ss_pred hHHHHHHHHhhccCcccCCeEEEeCCCCcHHHHHHHHhC---CCeEEEEeCChHHHHHHHHHhHH
Q 026036 61 GTFSFAEWLMHHREWIERRRCIELGSGTGALAIFLRKAM---NLDITTSDYNDQEIEDNIAYNST 122 (244)
Q Consensus 61 ~~~~l~~~~~~~~~~~~~~~VLdlG~G~G~~~~~~a~~~---~~~v~~~D~~~~~l~~~~~~~~~ 122 (244)
+++++.+-+. ...-..+-++.|=+||+|.+.-.+.... -..|.+.|++++++ +.+++|+.
T Consensus 36 AsEi~qR~l~-~l~~~~p~tLyDPCCG~gyLLTVlGLLh~~~l~~v~aSDId~~aL-~lA~kNL~ 98 (246)
T PF11599_consen 36 ASEIFQRALH-YLEGKGPYTLYDPCCGSGYLLTVLGLLHRRRLRRVYASDIDEDAL-ELARKNLS 98 (246)
T ss_dssp HHHHHHHHHC-TSSS-S-EEEEETT-TTSHHHHHHHHHTGGGEEEEEEEES-HHHH-HHHHHHHH
T ss_pred HHHHHHHHHH-hhcCCCCeeeeccCCCccHHHHHHHHhhhHHHHhHhcccCCHHHH-HHHHHhhh
Confidence 4444444332 2322345699999999998875554443 34699999999987 88888875
|
This protein mediates the resistance to the antibiotic avilamycin. AviRa methylates a specific guanine base within the peptidyl-transferase loop of the 23S ribosomal RNA [].; PDB: 1O9H_A 1O9G_A. |
| >PF02636 Methyltransf_28: Putative S-adenosyl-L-methionine-dependent methyltransferase; InterPro: IPR003788 This entry describes proteins of unknown function | Back alignment and domain information |
|---|
Probab=95.59 E-value=0.033 Score=45.46 Aligned_cols=43 Identities=21% Similarity=0.260 Sum_probs=29.2
Q ss_pred cCCeEEEeCCCCcHHHHHHHHhC---------CCeEEEEeCChHHHHHHHHHh
Q 026036 77 ERRRCIELGSGTGALAIFLRKAM---------NLDITTSDYNDQEIEDNIAYN 120 (244)
Q Consensus 77 ~~~~VLdlG~G~G~~~~~~a~~~---------~~~v~~~D~~~~~l~~~~~~~ 120 (244)
...+|+|+|+|+|.++.-+.... ..+++.+|.|+... +..++.
T Consensus 18 ~~~~ivE~GaG~G~La~diL~~l~~~~p~~~~~~~y~ivE~Sp~L~-~~Q~~~ 69 (252)
T PF02636_consen 18 EPLRIVEIGAGRGTLARDILRYLRKFSPEVYKRLRYHIVEISPYLR-ERQKER 69 (252)
T ss_dssp S-EEEEEES-TTSHHHHHHHHHHCCTTHHHHTTCEEEEE-TTCCCH-HHHHHH
T ss_pred cCcEEEEECCCchHHHHHHHHHHHHhChhhhhcceEEEEcCCHHHH-HHHHHH
Confidence 34699999999999987765533 35799999999742 444443
|
; PDB: 4F3N_A 1ZKD_B. |
| >KOG2651 consensus rRNA adenine N-6-methyltransferase [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=95.42 E-value=0.048 Score=46.50 Aligned_cols=49 Identities=16% Similarity=0.361 Sum_probs=39.1
Q ss_pred HHHHHHhhccCcccCCeEEEeCCCCcHHHHHHHHhCCCeEEEEeCChHH
Q 026036 64 SFAEWLMHHREWIERRRCIELGSGTGALAIFLRKAMNLDITTSDYNDQE 112 (244)
Q Consensus 64 ~l~~~~~~~~~~~~~~~VLdlG~G~G~~~~~~a~~~~~~v~~~D~~~~~ 112 (244)
.|.+.+.+......-..|+|+|+|-|.++.+++..++..|.++|-|...
T Consensus 140 ~lselvSsi~~f~gi~~vvD~GaG~G~LSr~lSl~y~lsV~aIegsq~~ 188 (476)
T KOG2651|consen 140 RLSELVSSISDFTGIDQVVDVGAGQGHLSRFLSLGYGLSVKAIEGSQRL 188 (476)
T ss_pred HHHHHHHHHHhhcCCCeeEEcCCCchHHHHHHhhccCceEEEeccchHH
Confidence 5555555544444556899999999999999998889999999999754
|
|
| >COG1565 Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=95.41 E-value=0.078 Score=45.08 Aligned_cols=58 Identities=16% Similarity=0.179 Sum_probs=39.2
Q ss_pred HHHHHHHHhhcc---CcccCCeEEEeCCCCcHHHHHHHHhC---------CCeEEEEeCChHHHHHHHHHh
Q 026036 62 TFSFAEWLMHHR---EWIERRRCIELGSGTGALAIFLRKAM---------NLDITTSDYNDQEIEDNIAYN 120 (244)
Q Consensus 62 ~~~l~~~~~~~~---~~~~~~~VLdlG~G~G~~~~~~a~~~---------~~~v~~~D~~~~~l~~~~~~~ 120 (244)
+..++.|+.+.- .......++|+|+|.|.++.-+.+.. ..++..++.|++ +.+..+.+
T Consensus 59 Gella~~~~~~wq~~g~p~~~~lvEiGaG~G~l~~DiL~~l~~L~P~~~~~~~~~iiE~s~~-L~~~Qk~~ 128 (370)
T COG1565 59 GELLAEQFLQLWQELGRPAPLKLVEIGAGRGTLASDILRTLRRLYPELYEALSYYIIEPSPE-LRARQKET 128 (370)
T ss_pred HHHHHHHHHHHHHHhcCCCCceEEEeCCCcChHHHHHHHHHHHhCHHHHhcceEEEEecCHH-HHHHHHHH
Confidence 556777766542 22234589999999999986654432 678999999997 42333333
|
|
| >PF01555 N6_N4_Mtase: DNA methylase; InterPro: IPR002941 This domain is found in DNA methylases | Back alignment and domain information |
|---|
Probab=95.41 E-value=0.062 Score=42.62 Aligned_cols=57 Identities=9% Similarity=0.076 Sum_probs=38.4
Q ss_pred eechHHHHHHHHhhccCcccCCeEEEeCCCCcHHHHHHHHhCCCeEEEEeCChHHHHHHH
Q 026036 58 LWPGTFSFAEWLMHHREWIERRRCIELGSGTGALAIFLRKAMNLDITTSDYNDQEIEDNI 117 (244)
Q Consensus 58 ~w~~~~~l~~~~~~~~~~~~~~~VLdlG~G~G~~~~~~a~~~~~~v~~~D~~~~~l~~~~ 117 (244)
.-+-...|.+.+..... .+|..|||--||+|..+.++.+ .+.+.+|+|++++.+ +.+
T Consensus 173 ~~~kP~~l~~~lI~~~t-~~gdiVlDpF~GSGTT~~aa~~-l~R~~ig~E~~~~y~-~~a 229 (231)
T PF01555_consen 173 PTQKPVELIERLIKAST-NPGDIVLDPFAGSGTTAVAAEE-LGRRYIGIEIDEEYC-EIA 229 (231)
T ss_dssp TT-S-HHHHHHHHHHHS--TT-EEEETT-TTTHHHHHHHH-TT-EEEEEESSHHHH-HHH
T ss_pred eecCCHHHHHHHHHhhh-ccceeeehhhhccChHHHHHHH-cCCeEEEEeCCHHHH-HHh
Confidence 33445566666655432 4789999999999999987765 488999999999865 544
|
In prokaryotes, the major role of DNA methylation is to protect host DNA against degradation by restriction enzymes. This family contains both N-4 cytosine-specific DNA methylases and N-6 Adenine-specific DNA methylases. N-4 cytosine-specific DNA methylases (2.1.1.113 from EC) [] are enzymes that specifically methylate the amino group at the C-4 position of cytosines in DNA. Such enzymes are found as components of type II restriction-modification systems in prokaryotes. Such enzymes recognise a specific sequence in DNA and methylate a cytosine in that sequence. By this action they protect DNA from cleavage by type II restriction enzymes that recognise the same sequence. N-6 adenine-specific DNA methylases (2.1.1.72 from EC) (A-Mtase) are enzymes that specifically methylate the amino group at the C-6 position of adenines in DNA. Such enzymes are found in the three existing types of bacterial restriction-modification systems (in type I system the A-Mtase is the product of the hsdM gene, and in type III it is the product of the mod gene). All of these enzymes recognise a specific sequence in DNA and methylate an adenine in that sequence.; GO: 0003677 DNA binding, 0008170 N-methyltransferase activity, 0006306 DNA methylation; PDB: 2ZIF_A 2ZIE_A 2ZIG_A 1NW6_A 1NW8_A 1NW7_A 1NW5_A 1EG2_A 1BOO_A 1G60_B .... |
| >PRK11524 putative methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=95.39 E-value=0.075 Score=44.25 Aligned_cols=57 Identities=5% Similarity=-0.064 Sum_probs=42.0
Q ss_pred HHHHHHHhhccCcccCCeEEEeCCCCcHHHHHHHHhCCCeEEEEeCChHHHHHHHHHhHH
Q 026036 63 FSFAEWLMHHREWIERRRCIELGSGTGALAIFLRKAMNLDITTSDYNDQEIEDNIAYNST 122 (244)
Q Consensus 63 ~~l~~~~~~~~~~~~~~~VLdlG~G~G~~~~~~a~~~~~~v~~~D~~~~~l~~~~~~~~~ 122 (244)
..|.+.+..... .+|..|||--||+|..++++.+ .+.+.+|+|++++.+ +.+++++.
T Consensus 195 ~~L~erlI~~~S-~~GD~VLDPF~GSGTT~~AA~~-lgR~~IG~Ei~~~Y~-~~a~~Rl~ 251 (284)
T PRK11524 195 EALLKRIILASS-NPGDIVLDPFAGSFTTGAVAKA-SGRKFIGIEINSEYI-KMGLRRLD 251 (284)
T ss_pred HHHHHHHHHHhC-CCCCEEEECCCCCcHHHHHHHH-cCCCEEEEeCCHHHH-HHHHHHHH
Confidence 445544443322 4889999999999999987755 499999999999865 66655543
|
|
| >PRK15001 SAM-dependent 23S ribosomal RNA mG1835 methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=95.25 E-value=0.69 Score=40.13 Aligned_cols=131 Identities=20% Similarity=0.162 Sum_probs=79.9
Q ss_pred ceEEEEecccCCC-CcceeechHHHHHHHHhhccCcc-cCCeEEEeCCCCcHHHHHHHHhCCCeEEEEeCChHHHHHHHH
Q 026036 41 MELVIREFAFHQL-NANFLWPGTFSFAEWLMHHREWI-ERRRCIELGSGTGALAIFLRKAMNLDITTSDYNDQEIEDNIA 118 (244)
Q Consensus 41 ~~~~~~~~~~~~~-~~~~~w~~~~~l~~~~~~~~~~~-~~~~VLdlG~G~G~~~~~~a~~~~~~v~~~D~~~~~l~~~~~ 118 (244)
..+.++-++.... ....-|+++- +|++++.... ...+||=|+=.-|.++..++.. ... ..+|.- .....++
T Consensus 9 ~~~~l~r~p~~~~~~~l~awdaad---e~ll~~~~~~~~~~~~~i~nd~fGal~~~l~~~-~~~-~~~ds~--~~~~~~~ 81 (378)
T PRK15001 9 RSLTLQRFPATDDVNPLQAWEAAD---EYLLQQLDDTEIRGPVLILNDAFGALSCALAEH-KPY-SIGDSY--ISELATR 81 (378)
T ss_pred ceeEEEECCCCCCcCcccccccHH---HHHHHHHhhcccCCCEEEEcCchhHHHHHHHhC-CCC-eeehHH--HHHHHHH
Confidence 3455554443222 2377888875 3344332221 1138999999999999988753 222 223432 2235667
Q ss_pred HhHHhcCCCCCcceEeeecCCCCCCCCCCccEEEEcccccCCcChHHHHHHHHHHHHhcCCCCceEee
Q 026036 119 YNSTTNGITPALPHIKHSWGDAFPIPNPDWDLILASDILLYVKQYSNLIKSLSVLLKSYKPKDSQVGH 186 (244)
Q Consensus 119 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fD~I~~~~~l~~~~~~~~l~~~l~~~~~~lk~gG~~~~~ 186 (244)
.|+..|+++.. .+. +-+..+...+.+|+|+. +.+.+...+...+..+.+.+.||+.++..
T Consensus 82 ~n~~~n~~~~~--~~~--~~~~~~~~~~~~d~vl~----~~PK~~~~l~~~l~~l~~~l~~~~~ii~g 141 (378)
T PRK15001 82 ENLRLNGIDES--SVK--FLDSTADYPQQPGVVLI----KVPKTLALLEQQLRALRKVVTSDTRIIAG 141 (378)
T ss_pred HHHHHcCCCcc--cce--eecccccccCCCCEEEE----EeCCCHHHHHHHHHHHHhhCCCCCEEEEE
Confidence 78888887432 111 11222233456999987 45677778888999999999999986654
|
|
| >COG0270 Dcm Site-specific DNA methylase [DNA replication, recombination, and repair] | Back alignment and domain information |
|---|
Probab=95.10 E-value=0.26 Score=41.95 Aligned_cols=128 Identities=13% Similarity=0.074 Sum_probs=71.9
Q ss_pred CCeEEEeCCCCcHHHHHHHHhCCCeEEEEeCChHHHHHHHHHhHHhcCCCCCcceEeeecCCCCCCC-CC-CccEEEEcc
Q 026036 78 RRRCIELGSGTGALAIFLRKAMNLDITTSDYNDQEIEDNIAYNSTTNGITPALPHIKHSWGDAFPIP-NP-DWDLILASD 155 (244)
Q Consensus 78 ~~~VLdlG~G~G~~~~~~a~~~~~~v~~~D~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~-~fD~I~~~~ 155 (244)
..+++||-||.|.+.+.+...+-.-+.++|+++.++ +..+.|-.... .+..+..+..... .. .+|++++..
T Consensus 3 ~~~~idLFsG~GG~~lGf~~agf~~~~a~Eid~~a~-~ty~~n~~~~~------~~~~di~~~~~~~~~~~~~DvligGp 75 (328)
T COG0270 3 KMKVIDLFAGIGGLSLGFEEAGFEIVFANEIDPPAV-ATYKANFPHGD------IILGDIKELDGEALRKSDVDVLIGGP 75 (328)
T ss_pred CceEEeeccCCchHHHHHHhcCCeEEEEEecCHHHH-HHHHHhCCCCc------eeechHhhcChhhccccCCCEEEeCC
Confidence 358999999999999888776545599999999876 55555533211 1111111111101 11 689999977
Q ss_pred cccCCc-----------ChHHHHHHHHHHHHhcCCCCceEeecccccCCCCCCCCCCCeEEEeeeeccCccchhhHHHHH
Q 026036 156 ILLYVK-----------QYSNLIKSLSVLLKSYKPKDSQVGHLTKNEQGEGTEGLPWPAFLMSWRRRIGKEDETIFFTSC 224 (244)
Q Consensus 156 ~l~~~~-----------~~~~l~~~l~~~~~~lk~gG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 224 (244)
+. ... ....|.--+.++...++| .+++. +|...+ ..+ . ....+.+.+.|
T Consensus 76 PC-Q~FS~aG~r~~~~D~R~~L~~~~~r~I~~~~P--~~fv~-----ENV~gl--------~~~---~-~~~~~~i~~~L 135 (328)
T COG0270 76 PC-QDFSIAGKRRGYDDPRGSLFLEFIRLIEQLRP--KFFVL-----ENVKGL--------LSS---K-GQTFDEIKKEL 135 (328)
T ss_pred CC-cchhhcCcccCCcCccceeeHHHHHHHHhhCC--CEEEE-----ecCchH--------Hhc---C-chHHHHHHHHH
Confidence 65 221 111233444555566667 33333 111111 101 1 12357888899
Q ss_pred hhcCCeEE
Q 026036 225 ENAGLEVK 232 (244)
Q Consensus 225 ~~~Gf~v~ 232 (244)
++.|+.+.
T Consensus 136 ~~~GY~~~ 143 (328)
T COG0270 136 EELGYGVE 143 (328)
T ss_pred HHcCCcch
Confidence 99999733
|
|
| >COG1063 Tdh Threonine dehydrogenase and related Zn-dependent dehydrogenases [Amino acid transport and metabolism / General function prediction only] | Back alignment and domain information |
|---|
Probab=95.08 E-value=0.15 Score=43.75 Aligned_cols=98 Identities=15% Similarity=0.191 Sum_probs=59.3
Q ss_pred ccCCeEEEeCCC-CcHHHHHHHHhC-CCeEEEEeCChHHHHHHHHHhHHhcCCCCCcceEeeecCC-CCCCCC-CCccEE
Q 026036 76 IERRRCIELGSG-TGALAIFLRKAM-NLDITTSDYNDQEIEDNIAYNSTTNGITPALPHIKHSWGD-AFPIPN-PDWDLI 151 (244)
Q Consensus 76 ~~~~~VLdlG~G-~G~~~~~~a~~~-~~~v~~~D~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~-~~fD~I 151 (244)
.++.+|+=+||| .|+++..+++.. ..+|+++|.+++-+ +.+++............. +... ...... ..+|++
T Consensus 167 ~~~~~V~V~GaGpIGLla~~~a~~~Ga~~Viv~d~~~~Rl-~~A~~~~g~~~~~~~~~~---~~~~~~~~~t~g~g~D~v 242 (350)
T COG1063 167 RPGGTVVVVGAGPIGLLAIALAKLLGASVVIVVDRSPERL-ELAKEAGGADVVVNPSED---DAGAEILELTGGRGADVV 242 (350)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHcCCceEEEeCCCHHHH-HHHHHhCCCeEeecCccc---cHHHHHHHHhCCCCCCEE
Confidence 344499999999 688887777766 57899999999876 555542211101000000 0000 001111 268988
Q ss_pred EEcccccCCcChHHHHHHHHHHHHhcCCCCceEee
Q 026036 152 LASDILLYVKQYSNLIKSLSVLLKSYKPKDSQVGH 186 (244)
Q Consensus 152 ~~~~~l~~~~~~~~l~~~l~~~~~~lk~gG~~~~~ 186 (244)
+=.-- .+ .++..+.+.++|||++.+.
T Consensus 243 ie~~G------~~---~~~~~ai~~~r~gG~v~~v 268 (350)
T COG1063 243 IEAVG------SP---PALDQALEALRPGGTVVVV 268 (350)
T ss_pred EECCC------CH---HHHHHHHHHhcCCCEEEEE
Confidence 75322 22 5778889999999998877
|
|
| >TIGR01202 bchC 2-desacetyl-2-hydroxyethyl bacteriochlorophyllide A dehydrogenase | Back alignment and domain information |
|---|
Probab=94.97 E-value=0.39 Score=40.29 Aligned_cols=85 Identities=16% Similarity=0.119 Sum_probs=50.5
Q ss_pred cCCeEEEeCCC-CcHHHHHHHHhCCCe-EEEEeCChHHHHHHHHHhHHhcCCCCCcceEeeecCCCCCCCCCCccEEEEc
Q 026036 77 ERRRCIELGSG-TGALAIFLRKAMNLD-ITTSDYNDQEIEDNIAYNSTTNGITPALPHIKHSWGDAFPIPNPDWDLILAS 154 (244)
Q Consensus 77 ~~~~VLdlG~G-~G~~~~~~a~~~~~~-v~~~D~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fD~I~~~ 154 (244)
++.+||=+||| .|.+++.+++..+.+ |.++|.+++.+ +.+... .. + +..+. ....+|+|+-
T Consensus 144 ~~~~vlV~G~G~vG~~a~q~ak~~G~~~v~~~~~~~~rl-~~a~~~----~~------i--~~~~~---~~~g~Dvvid- 206 (308)
T TIGR01202 144 KVLPDLIVGHGTLGRLLARLTKAAGGSPPAVWETNPRRR-DGATGY----EV------L--DPEKD---PRRDYRAIYD- 206 (308)
T ss_pred CCCcEEEECCCHHHHHHHHHHHHcCCceEEEeCCCHHHH-Hhhhhc----cc------c--Chhhc---cCCCCCEEEE-
Confidence 57789988875 566666667666665 77788877554 332211 11 1 00010 1235898874
Q ss_pred ccccCCcChHHHHHHHHHHHHhcCCCCceEee
Q 026036 155 DILLYVKQYSNLIKSLSVLLKSYKPKDSQVGH 186 (244)
Q Consensus 155 ~~l~~~~~~~~l~~~l~~~~~~lk~gG~~~~~ 186 (244)
+. ..+ .++..+.+.++++|++++.
T Consensus 207 -~~----G~~---~~~~~~~~~l~~~G~iv~~ 230 (308)
T TIGR01202 207 -AS----GDP---SLIDTLVRRLAKGGEIVLA 230 (308)
T ss_pred -CC----CCH---HHHHHHHHhhhcCcEEEEE
Confidence 22 112 4566778899999998765
|
|
| >PF04672 Methyltransf_19: S-adenosyl methyltransferase; InterPro: IPR006764 This is a family of uncharacterised proteins | Back alignment and domain information |
|---|
Probab=94.86 E-value=0.21 Score=40.92 Aligned_cols=107 Identities=13% Similarity=0.115 Sum_probs=57.5
Q ss_pred CeEEEeCCCC---cHHHHHHHHh--CCCeEEEEeCChHHHHHHHHHhHHhcCCCCCcceEeeecCCCC---C------CC
Q 026036 79 RRCIELGSGT---GALAIFLRKA--MNLDITTSDYNDQEIEDNIAYNSTTNGITPALPHIKHSWGDAF---P------IP 144 (244)
Q Consensus 79 ~~VLdlG~G~---G~~~~~~a~~--~~~~v~~~D~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~------~~ 144 (244)
...||||||. |..-- .|+. -.++|+-+|.++-.+ ...+.-+..+.- .....+..+..++. . ..
T Consensus 70 rQFLDlGsGlPT~~nvHe-vAq~~~P~aRVVYVD~DPvv~-ah~ralL~~~~~-g~t~~v~aD~r~p~~iL~~p~~~~~l 146 (267)
T PF04672_consen 70 RQFLDLGSGLPTAGNVHE-VAQRVAPDARVVYVDNDPVVL-AHARALLADNPR-GRTAYVQADLRDPEAILAHPEVRGLL 146 (267)
T ss_dssp -EEEEET--S--SS-HHH-HHHHH-TT-EEEEEESSHHHH-HCCHHHHTT-TT-SEEEEEE--TT-HHHHHCSHHHHCC-
T ss_pred ceEEEcccCCCCCCCHhH-HHHhhCCCceEEEECCCchHH-HHHHhhhcCCCC-ccEEEEeCCCCCHHHHhcCHHHHhcC
Confidence 3799999993 33332 3332 278999999999654 555544333321 12344544444321 1 11
Q ss_pred C-CCccEEEEcccccCCcChHHHHHHHHHHHHhcCCCCceEeecc
Q 026036 145 N-PDWDLILASDILLYVKQYSNLIKSLSVLLKSYKPKDSQVGHLT 188 (244)
Q Consensus 145 ~-~~fD~I~~~~~l~~~~~~~~l~~~l~~~~~~lk~gG~~~~~~~ 188 (244)
+ .+.=.+++..++++....++...+++.+...|.||..++++..
T Consensus 147 D~~rPVavll~~vLh~v~D~~dp~~iv~~l~d~lapGS~L~ish~ 191 (267)
T PF04672_consen 147 DFDRPVAVLLVAVLHFVPDDDDPAGIVARLRDALAPGSYLAISHA 191 (267)
T ss_dssp -TTS--EEEECT-GGGS-CGCTHHHHHHHHHCCS-TT-EEEEEEE
T ss_pred CCCCCeeeeeeeeeccCCCccCHHHHHHHHHHhCCCCceEEEEec
Confidence 1 2233577788886666656778999999999999998888833
|
; PDB: 3GIW_A 3GO4_A 2QE6_A. |
| >KOG3115 consensus Methyltransferase-like protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=94.76 E-value=0.1 Score=40.78 Aligned_cols=45 Identities=18% Similarity=0.271 Sum_probs=33.7
Q ss_pred cCCeEEEeCCCCcHHHHHHHHhC-CCeEEEEeCChHHHHHHHHHhHH
Q 026036 77 ERRRCIELGSGTGALAIFLRKAM-NLDITTSDYNDQEIEDNIAYNST 122 (244)
Q Consensus 77 ~~~~VLdlG~G~G~~~~~~a~~~-~~~v~~~D~~~~~l~~~~~~~~~ 122 (244)
+.-.+.|||||-|.+.+.++.++ ..-+.|.+|-... .+..+..+.
T Consensus 60 ~kvefaDIGCGyGGLlv~Lsp~fPdtLiLGmEIR~KV-sdYVk~RI~ 105 (249)
T KOG3115|consen 60 KKVEFADIGCGYGGLLMKLAPKFPDTLILGMEIRDKV-SDYVKERIQ 105 (249)
T ss_pred ccceEEeeccCccchhhhccccCccceeeeehhhHHH-HHHHHHHHH
Confidence 33579999999999999998887 4459999997653 355555443
|
|
| >PF07757 AdoMet_MTase: Predicted AdoMet-dependent methyltransferase; InterPro: IPR011671 tRNA (uracil-O(2)-)-methyltransferase catalyses the formation of O(2)-methyl-uracil at position 44 (m2U44) in tRNA(Ser) [] | Back alignment and domain information |
|---|
Probab=94.64 E-value=0.067 Score=37.30 Aligned_cols=33 Identities=21% Similarity=0.272 Sum_probs=26.2
Q ss_pred cCCeEEEeCCCCcHHHHHHHHhCCCeEEEEeCCh
Q 026036 77 ERRRCIELGSGTGALAIFLRKAMNLDITTSDYND 110 (244)
Q Consensus 77 ~~~~VLdlG~G~G~~~~~~a~~~~~~v~~~D~~~ 110 (244)
+...-+|||||+|++.-.+... +..-.|+|.-.
T Consensus 58 ~~~~FVDlGCGNGLLV~IL~~E-Gy~G~GiD~R~ 90 (112)
T PF07757_consen 58 KFQGFVDLGCGNGLLVYILNSE-GYPGWGIDARR 90 (112)
T ss_pred CCCceEEccCCchHHHHHHHhC-CCCcccccccc
Confidence 3458999999999999877665 66778888754
|
; GO: 0008168 methyltransferase activity |
| >PF10354 DUF2431: Domain of unknown function (DUF2431); InterPro: IPR019446 This entry represents the N-terminal domain of a family of proteins whose function is not known | Back alignment and domain information |
|---|
Probab=94.62 E-value=1.1 Score=34.12 Aligned_cols=128 Identities=15% Similarity=0.090 Sum_probs=67.4
Q ss_pred CCCCcHHHHHHHHhC--CCeEEEEeCChHH-HHHHH---HHhHHhcCCCCCcceEeeecCCC---CCCCCCCccEEEEcc
Q 026036 85 GSGTGALAIFLRKAM--NLDITTSDYNDQE-IEDNI---AYNSTTNGITPALPHIKHSWGDA---FPIPNPDWDLILASD 155 (244)
Q Consensus 85 G~G~G~~~~~~a~~~--~~~v~~~D~~~~~-l~~~~---~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~fD~I~~~~ 155 (244)
|=|.=.++..+++.. +.++++|-++.+. +.+.. ..|+......+..-...++.... ......+||.|+-+.
T Consensus 4 GeGdfSFs~sL~~~~~~~~~l~ATs~ds~~~l~~kY~~~~~nl~~L~~~g~~V~~~VDat~l~~~~~~~~~~FDrIiFNF 83 (166)
T PF10354_consen 4 GEGDFSFSLSLARAFGSATNLVATSYDSEEELLQKYPDAEENLEELRELGVTVLHGVDATKLHKHFRLKNQRFDRIIFNF 83 (166)
T ss_pred eccchHHHHHHHHHcCCCCeEEEeecCchHHHHHhcccHHHHHHHHhhcCCccccCCCCCcccccccccCCcCCEEEEeC
Confidence 334445566666664 5578888886542 21221 13333221111111112222221 122356899999988
Q ss_pred cccC------C----cChHHHHHHHHHHHHhcCCCCceEeecccccCCCCCCCCCCCeEEEeeeeccCccchhhHHHHHh
Q 026036 156 ILLY------V----KQYSNLIKSLSVLLKSYKPKDSQVGHLTKNEQGEGTEGLPWPAFLMSWRRRIGKEDETIFFTSCE 225 (244)
Q Consensus 156 ~l~~------~----~~~~~l~~~l~~~~~~lk~gG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 225 (244)
+.-- . ....-+...++.+.++|+++|.+.++.-. ..| +. . =.+.++++
T Consensus 84 PH~G~~~~~~~~~i~~nr~Ll~~Ff~Sa~~~L~~~G~IhVTl~~----------~~p-----y~-~------W~i~~lA~ 141 (166)
T PF10354_consen 84 PHVGGGSEDGKRNIRLNRELLRGFFKSASQLLKPDGEIHVTLKD----------GQP-----YD-S------WNIEELAA 141 (166)
T ss_pred CCCCCCccchhHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEeCC----------CCC-----Cc-c------ccHHHHHH
Confidence 8522 0 01123457778888999999988877211 111 11 1 13357888
Q ss_pred hcCCeEEEe
Q 026036 226 NAGLEVKHL 234 (244)
Q Consensus 226 ~~Gf~v~~~ 234 (244)
.+||.+...
T Consensus 142 ~~gl~l~~~ 150 (166)
T PF10354_consen 142 EAGLVLVRK 150 (166)
T ss_pred hcCCEEEEE
Confidence 899987765
|
|
| >TIGR00006 S-adenosyl-methyltransferase MraW | Back alignment and domain information |
|---|
Probab=94.60 E-value=0.18 Score=42.34 Aligned_cols=57 Identities=11% Similarity=0.006 Sum_probs=43.6
Q ss_pred HHHHHHhhccCcccCCeEEEeCCCCcHHHHHHHHhC-CCeEEEEeCChHHHHHHHHHhH
Q 026036 64 SFAEWLMHHREWIERRRCIELGSGTGALAIFLRKAM-NLDITTSDYNDQEIEDNIAYNS 121 (244)
Q Consensus 64 ~l~~~~~~~~~~~~~~~VLdlG~G~G~~~~~~a~~~-~~~v~~~D~~~~~l~~~~~~~~ 121 (244)
+|.+-+++.....++..++|--+|.|..+..++... ..+|+|+|.++.++ +.+++..
T Consensus 7 Vll~Evl~~L~~~~ggiyVD~TlG~GGHS~~iL~~l~~g~vigiD~D~~Al-~~ak~~L 64 (305)
T TIGR00006 7 VLLDEVVEGLNIKPDGIYIDCTLGFGGHSKAILEQLGTGRLIGIDRDPQAI-AFAKERL 64 (305)
T ss_pred hhHHHHHHhcCcCCCCEEEEeCCCChHHHHHHHHhCCCCEEEEEcCCHHHH-HHHHHHH
Confidence 344444445555678899999999999999998775 58899999999987 6665544
|
Genetics paper in 1972 links mra cluster to peptidoglycan biosynthesis in E. coli. Seems to be common in proteobacteria.wn. |
| >PRK13699 putative methylase; Provisional | Back alignment and domain information |
|---|
Probab=94.53 E-value=0.21 Score=40.16 Aligned_cols=57 Identities=7% Similarity=-0.058 Sum_probs=40.8
Q ss_pred HHHHHHHhhccCcccCCeEEEeCCCCcHHHHHHHHhCCCeEEEEeCChHHHHHHHHHhHH
Q 026036 63 FSFAEWLMHHREWIERRRCIELGSGTGALAIFLRKAMNLDITTSDYNDQEIEDNIAYNST 122 (244)
Q Consensus 63 ~~l~~~~~~~~~~~~~~~VLdlG~G~G~~~~~~a~~~~~~v~~~D~~~~~l~~~~~~~~~ 122 (244)
..|.+.++.... .+|..|||--||+|..++++.+ .+.+.+|+|++++.. +.+.+++.
T Consensus 150 ~~l~~~~i~~~s-~~g~~vlDpf~Gsgtt~~aa~~-~~r~~~g~e~~~~y~-~~~~~r~~ 206 (227)
T PRK13699 150 VTSLQPLIESFT-HPNAIVLDPFAGSGSTCVAALQ-SGRRYIGIELLEQYH-RAGQQRLA 206 (227)
T ss_pred HHHHHHHHHHhC-CCCCEEEeCCCCCCHHHHHHHH-cCCCEEEEecCHHHH-HHHHHHHH
Confidence 344455443322 3788999999999999887765 488999999999865 55544443
|
|
| >PLN02668 indole-3-acetate carboxyl methyltransferase | Back alignment and domain information |
|---|
Probab=94.38 E-value=0.39 Score=41.67 Aligned_cols=35 Identities=17% Similarity=0.338 Sum_probs=24.8
Q ss_pred CCeEEEeCCCCcHHHHHHHHhC----------------CCeEEEEeCChHH
Q 026036 78 RRRCIELGSGTGALAIFLRKAM----------------NLDITTSDYNDQE 112 (244)
Q Consensus 78 ~~~VLdlG~G~G~~~~~~a~~~----------------~~~v~~~D~~~~~ 112 (244)
..+|+|+|||+|..++.+.... ..+|...|+..+.
T Consensus 64 ~~~iaDlGcs~G~ntl~~vs~iI~~i~~~~~~~~~~~pe~qv~~nDLP~ND 114 (386)
T PLN02668 64 PFTAVDLGCSSGSNTIHIIDVIVKHMSKRYESAGLDPPEFSAFFSDLPSND 114 (386)
T ss_pred ceeEEEecCCCCccHHHHHHHHHHHHHHHhhhcCCCCCcceEEecCCCCCC
Confidence 4589999999997775543211 3578899987653
|
|
| >PF03492 Methyltransf_7: SAM dependent carboxyl methyltransferase; InterPro: IPR005299 This family of plant methyltransferases contains enzymes that act on a variety of substrates including salicylic acid, jasmonic acid and 7-Methylxanthine | Back alignment and domain information |
|---|
Probab=94.33 E-value=0.25 Score=42.11 Aligned_cols=114 Identities=11% Similarity=0.085 Sum_probs=55.6
Q ss_pred cCCeEEEeCCCCcHHHHHHHHhC----------C-------CeEEEEeCChHHH---HHHHHHhHHhcCCCCCcceEeee
Q 026036 77 ERRRCIELGSGTGALAIFLRKAM----------N-------LDITTSDYNDQEI---EDNIAYNSTTNGITPALPHIKHS 136 (244)
Q Consensus 77 ~~~~VLdlG~G~G~~~~~~a~~~----------~-------~~v~~~D~~~~~l---~~~~~~~~~~~~~~~~~~~~~~~ 136 (244)
..-+|.|+||.+|..++.+.... . -+|+..|+..+.. -..+..+.....-...+ .+...
T Consensus 16 ~~~~iaD~GcS~G~Nsl~~~~~ii~~i~~~~~~~~~~~~~e~~v~~nDlP~NDFn~lF~~l~~~~~~~~~~~~~-f~~gv 94 (334)
T PF03492_consen 16 KPFRIADLGCSSGPNSLLAVSNIIDAIRERCRSSNNQPPPEFQVFFNDLPSNDFNTLFKSLPSFQQSLKKFRNY-FVSGV 94 (334)
T ss_dssp TEEEEEEES--SSHHHHHHHHHHHHHHHHHHHCTT-SS--EEEEEEEE-TTS-HHHHHHCHHHHHHHHHHTTSE-EEEEE
T ss_pred CceEEEecCCCCCccHHHHHHHHHHHHHHHhhhhcCCCCCeEEEEeCCCCCccHHHHHHhChhhhhccCCCceE-EEEec
Confidence 44699999999998887654321 1 3799999977532 11111111000000111 12221
Q ss_pred cCC--CCCCCCCCccEEEEcccccCCcC-------------------------------------hHHHHHHHHHHHHhc
Q 026036 137 WGD--AFPIPNPDWDLILASDILLYVKQ-------------------------------------YSNLIKSLSVLLKSY 177 (244)
Q Consensus 137 ~~~--~~~~~~~~fD~I~~~~~l~~~~~-------------------------------------~~~l~~~l~~~~~~l 177 (244)
.+. ..-++.++.|+++++.++ ||.+ ..++...|+.=++-|
T Consensus 95 pgSFy~rLfP~~Svh~~~Ss~al-HWLS~vP~~l~~~~~~~~Nkg~i~~~~~~~~~v~~ay~~Qf~~D~~~FL~~Ra~EL 173 (334)
T PF03492_consen 95 PGSFYGRLFPSNSVHFGHSSYAL-HWLSQVPEELVDKSSPAWNKGNIYISRTSPPEVAKAYAKQFQKDFSSFLKARAEEL 173 (334)
T ss_dssp ES-TTS--S-TT-EEEEEEES-T-TB-SSS-CCCCTTTSTTTSTTTSSSSTTS-HHHHHHHHHHHHHHHHHHHHHHHHHE
T ss_pred CchhhhccCCCCceEEEEEechh-hhcccCCcccccccccccccCcEEEecCCCHHHHHHHHHHHHHHHHHHHHHhhhee
Confidence 221 122456788888888877 3311 112333444444678
Q ss_pred CCCCceEeecccccC
Q 026036 178 KPKDSQVGHLTKNEQ 192 (244)
Q Consensus 178 k~gG~~~~~~~~~~~ 192 (244)
+|||++++...+.+.
T Consensus 174 v~GG~mvl~~~gr~~ 188 (334)
T PF03492_consen 174 VPGGRMVLTFLGRDE 188 (334)
T ss_dssp EEEEEEEEEEEE-ST
T ss_pred ccCcEEEEEEeeccc
Confidence 999999999555544
|
Caffeine is synthesized through sequential three-step methylation of xanthine derivatives at positions 7-N, 3-N, and 1-N. The protein 7-methylxanthine methyltransferase (designated as CaMXMT) catalyses the second step to produce theobromine [].; GO: 0008168 methyltransferase activity; PDB: 2EFJ_A 1M6E_X 2EG5_C 3B5I_B. |
| >cd05188 MDR Medium chain reductase/dehydrogenase (MDR)/zinc-dependent alcohol dehydrogenase-like family | Back alignment and domain information |
|---|
Probab=94.22 E-value=0.48 Score=38.23 Aligned_cols=92 Identities=18% Similarity=0.187 Sum_probs=55.5
Q ss_pred ccCCeEEEeCCCC-cHHHHHHHHhCCCeEEEEeCChHHHHHHHHHhHHhcCCCCCcceEeeecCCCC------CCCCCCc
Q 026036 76 IERRRCIELGSGT-GALAIFLRKAMNLDITTSDYNDQEIEDNIAYNSTTNGITPALPHIKHSWGDAF------PIPNPDW 148 (244)
Q Consensus 76 ~~~~~VLdlG~G~-G~~~~~~a~~~~~~v~~~D~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~f 148 (244)
.++.+||-.|+|+ |.....+++..+.+|++++.+++.. +.++.. +... .++..+.. ......+
T Consensus 133 ~~~~~vli~g~~~~G~~~~~~a~~~g~~v~~~~~~~~~~-~~~~~~----g~~~-----~~~~~~~~~~~~~~~~~~~~~ 202 (271)
T cd05188 133 KPGDTVLVLGAGGVGLLAAQLAKAAGARVIVTDRSDEKL-ELAKEL----GADH-----VIDYKEEDLEEELRLTGGGGA 202 (271)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHcCCeEEEEcCCHHHH-HHHHHh----CCce-----eccCCcCCHHHHHHHhcCCCC
Confidence 5788999999985 5556666666689999999987654 444322 1100 01111100 0113469
Q ss_pred cEEEEcccccCCcChHHHHHHHHHHHHhcCCCCceEee
Q 026036 149 DLILASDILLYVKQYSNLIKSLSVLLKSYKPKDSQVGH 186 (244)
Q Consensus 149 D~I~~~~~l~~~~~~~~l~~~l~~~~~~lk~gG~~~~~ 186 (244)
|+++.+-. .. ..+..+.+.++++|+++..
T Consensus 203 d~vi~~~~------~~---~~~~~~~~~l~~~G~~v~~ 231 (271)
T cd05188 203 DVVIDAVG------GP---ETLAQALRLLRPGGRIVVV 231 (271)
T ss_pred CEEEECCC------CH---HHHHHHHHhcccCCEEEEE
Confidence 99986321 11 3455667888999998765
|
The medium chain reductase/dehydrogenases (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH) , quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. The zinc-dependent alcohol dehydro |
| >KOG2912 consensus Predicted DNA methylase [Function unknown] | Back alignment and domain information |
|---|
Probab=94.19 E-value=0.13 Score=42.95 Aligned_cols=79 Identities=13% Similarity=0.203 Sum_probs=52.0
Q ss_pred EEEeCCCCcHHH-HHHHHhCCCeEEEEeCChHHHHHHHHHhHHhcCCCCCcceEeeecCC-----CCCCC-CCCccEEEE
Q 026036 81 CIELGSGTGALA-IFLRKAMNLDITTSDYNDQEIEDNIAYNSTTNGITPALPHIKHSWGD-----AFPIP-NPDWDLILA 153 (244)
Q Consensus 81 VLdlG~G~G~~~-~~~a~~~~~~v~~~D~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~-~~~fD~I~~ 153 (244)
-+|||.|+..+- +.=+.+.+....++|++...+ ..+..|+..|+++..+..+....-+ ..... +.-||.++|
T Consensus 106 GiDIgtgasci~~llg~rq~n~~f~~teidd~s~-~~a~snV~qn~lss~ikvV~~~~~ktll~d~~~~~~e~~ydFcMc 184 (419)
T KOG2912|consen 106 GIDIGTGASCIYPLLGARQNNWYFLATEIDDMSF-NYAKSNVEQNNLSSLIKVVKVEPQKTLLMDALKEESEIIYDFCMC 184 (419)
T ss_pred eeeccCchhhhHHhhhchhccceeeeeecccccc-chhhccccccccccceeeEEecchhhcchhhhccCccceeeEEec
Confidence 478876655332 222333467799999998776 8888899999997766655442211 11111 335999999
Q ss_pred cccccCC
Q 026036 154 SDILLYV 160 (244)
Q Consensus 154 ~~~l~~~ 160 (244)
+.++|.+
T Consensus 185 NPPFfe~ 191 (419)
T KOG2912|consen 185 NPPFFEN 191 (419)
T ss_pred CCchhhc
Confidence 9999765
|
|
| >cd08237 ribitol-5-phosphate_DH ribitol-5-phosphate dehydrogenase | Back alignment and domain information |
|---|
Probab=94.11 E-value=0.34 Score=41.31 Aligned_cols=92 Identities=12% Similarity=0.142 Sum_probs=53.1
Q ss_pred cccCCeEEEeCCC-CcHHHHHHHHh-C-CCeEEEEeCChHHHHHHHHHhHHhcCCCCCcceEeeecCCCCCCCCCCccEE
Q 026036 75 WIERRRCIELGSG-TGALAIFLRKA-M-NLDITTSDYNDQEIEDNIAYNSTTNGITPALPHIKHSWGDAFPIPNPDWDLI 151 (244)
Q Consensus 75 ~~~~~~VLdlG~G-~G~~~~~~a~~-~-~~~v~~~D~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fD~I 151 (244)
..+|.+||=+||| .|.+++.++++ . +.+|+++|.+++.+ +.++. . +.. ..+ -++.+ ...+|+|
T Consensus 161 ~~~g~~VlV~G~G~vGl~~~~~a~~~~g~~~vi~~~~~~~k~-~~a~~-~---~~~---~~~-~~~~~-----~~g~d~v 226 (341)
T cd08237 161 HKDRNVIGVWGDGNLGYITALLLKQIYPESKLVVFGKHQEKL-DLFSF-A---DET---YLI-DDIPE-----DLAVDHA 226 (341)
T ss_pred CCCCCEEEEECCCHHHHHHHHHHHHhcCCCcEEEEeCcHhHH-HHHhh-c---Cce---eeh-hhhhh-----ccCCcEE
Confidence 3568899999975 44444455553 3 57899999988654 44432 1 110 000 00111 1147888
Q ss_pred EEcccccCCcChHHHHHHHHHHHHhcCCCCceEee
Q 026036 152 LASDILLYVKQYSNLIKSLSVLLKSYKPKDSQVGH 186 (244)
Q Consensus 152 ~~~~~l~~~~~~~~l~~~l~~~~~~lk~gG~~~~~ 186 (244)
+- +. -....+ .++....+.+++||++++.
T Consensus 227 iD--~~-G~~~~~---~~~~~~~~~l~~~G~iv~~ 255 (341)
T cd08237 227 FE--CV-GGRGSQ---SAINQIIDYIRPQGTIGLM 255 (341)
T ss_pred EE--CC-CCCccH---HHHHHHHHhCcCCcEEEEE
Confidence 73 33 111012 5677788999999998765
|
NAD-linked ribitol-5-phosphate dehydrogenase, a member of the MDR/zinc-dependent alcohol dehydrogenase-like family, oxidizes the phosphate ester of ribitol-5-phosphate to xylulose-5-phosphate of the pentose phosphate pathway. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase ( |
| >cd08254 hydroxyacyl_CoA_DH 6-hydroxycyclohex-1-ene-1-carboxyl-CoA dehydrogenase, N-benzyl-3-pyrrolidinol dehydrogenase, and other MDR family members | Back alignment and domain information |
|---|
Probab=93.95 E-value=0.27 Score=41.36 Aligned_cols=99 Identities=19% Similarity=0.179 Sum_probs=58.3
Q ss_pred CcccCCeEEEeCCC-CcHHHHHHHHhCCCeEEEEeCChHHHHHHHHHhHHhcCCCCCcceEeeecCCCC-CCCCCCccEE
Q 026036 74 EWIERRRCIELGSG-TGALAIFLRKAMNLDITTSDYNDQEIEDNIAYNSTTNGITPALPHIKHSWGDAF-PIPNPDWDLI 151 (244)
Q Consensus 74 ~~~~~~~VLdlG~G-~G~~~~~~a~~~~~~v~~~D~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~fD~I 151 (244)
...++.+||..|+| .|..++.+++..+.+|++++.+++.. +.++.. +....+......+.+.. ......+|+|
T Consensus 162 ~~~~~~~vli~g~g~vG~~~~~la~~~G~~V~~~~~s~~~~-~~~~~~----g~~~~~~~~~~~~~~~~~~~~~~~~D~v 236 (338)
T cd08254 162 EVKPGETVLVIGLGGLGLNAVQIAKAMGAAVIAVDIKEEKL-ELAKEL----GADEVLNSLDDSPKDKKAAGLGGGFDVI 236 (338)
T ss_pred CCCCCCEEEEECCcHHHHHHHHHHHHcCCEEEEEcCCHHHH-HHHHHh----CCCEEEcCCCcCHHHHHHHhcCCCceEE
Confidence 35577899998876 46777777887788999999988765 444331 22100000000000000 1123468988
Q ss_pred EEcccccCCcChHHHHHHHHHHHHhcCCCCceEee
Q 026036 152 LASDILLYVKQYSNLIKSLSVLLKSYKPKDSQVGH 186 (244)
Q Consensus 152 ~~~~~l~~~~~~~~l~~~l~~~~~~lk~gG~~~~~ 186 (244)
+.. . . .. ..++.+.+.|+++|+++..
T Consensus 237 id~--~-g---~~---~~~~~~~~~l~~~G~~v~~ 262 (338)
T cd08254 237 FDF--V-G---TQ---PTFEDAQKAVKPGGRIVVV 262 (338)
T ss_pred EEC--C-C---CH---HHHHHHHHHhhcCCEEEEE
Confidence 752 2 0 12 4667788999999998765
|
This group contains enzymes of the zinc-dependent alcohol dehydrogenase family, including members (aka MDR) identified as 6-hydroxycyclohex-1-ene-1-carboxyl-CoA dehydrogenase and N-benzyl-3-pyrrolidinol dehydrogenase. 6-hydroxycyclohex-1-ene-1-carboxyl-CoA dehydrogenase catalyzes the conversion of 6-Hydroxycyclohex-1-enecarbonyl-CoA and NAD+ to 6-Ketoxycyclohex-1-ene-1-carboxyl-CoA,NADH, and H+. This group displays the characteristic catalytic and structural zinc sites of the zinc-dependent alcohol dehydrogenases. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentatio |
| >PRK10458 DNA cytosine methylase; Provisional | Back alignment and domain information |
|---|
Probab=93.90 E-value=1.8 Score=38.65 Aligned_cols=42 Identities=21% Similarity=0.235 Sum_probs=33.7
Q ss_pred CCeEEEeCCCCcHHHHHHHHhCCCeEEEEeCChHHHHHHHHHh
Q 026036 78 RRRCIELGSGTGALAIFLRKAMNLDITTSDYNDQEIEDNIAYN 120 (244)
Q Consensus 78 ~~~VLdlG~G~G~~~~~~a~~~~~~v~~~D~~~~~l~~~~~~~ 120 (244)
..+++||-||.|.+.+.+-..+..-|.++|+++.+. +..+.|
T Consensus 88 ~~~~iDLFsGiGGl~lGfe~aG~~~v~a~Eid~~A~-~TY~~N 129 (467)
T PRK10458 88 AFRFIDLFAGIGGIRRGFEAIGGQCVFTSEWNKHAV-RTYKAN 129 (467)
T ss_pred CceEEEeCcCccHHHHHHHHcCCEEEEEEechHHHH-HHHHHH
Confidence 559999999999999988766555688999999875 555555
|
|
| >PF06859 Bin3: Bicoid-interacting protein 3 (Bin3); InterPro: IPR010675 This entry represents a conserved region of approximately 120 residues within eukaryotic Bicoid-interacting protein 3 (Bin3) | Back alignment and domain information |
|---|
Probab=93.80 E-value=0.02 Score=40.04 Aligned_cols=39 Identities=13% Similarity=0.152 Sum_probs=28.7
Q ss_pred CccEEEEcccccCCc----ChHHHHHHHHHHHHhcCCCCceEee
Q 026036 147 DWDLILASDILLYVK----QYSNLIKSLSVLLKSYKPKDSQVGH 186 (244)
Q Consensus 147 ~fD~I~~~~~l~~~~----~~~~l~~~l~~~~~~lk~gG~~~~~ 186 (244)
+||+|+|-.+. .+- ..+-+...++.+++.|+|||.+++-
T Consensus 1 ~yDvilclSVt-kWIHLn~GD~Gl~~~f~~~~~~L~pGG~lilE 43 (110)
T PF06859_consen 1 QYDVILCLSVT-KWIHLNWGDEGLKRFFRRIYSLLRPGGILILE 43 (110)
T ss_dssp -EEEEEEES-H-HHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEE
T ss_pred CccEEEEEEee-EEEEecCcCHHHHHHHHHHHHhhCCCCEEEEe
Confidence 48999997776 322 1234668899999999999998876
|
Bin3, which shows similarity to a number of protein methyltransferases that modify RNA-binding proteins, interacts with Bicoid, which itself directs pattern formation in the early Drosophila embryo. The interaction might allow Bicoid to switch between its dual roles in transcription and translation []. Note that proteins of the entry contain a conserved HLN motif.; GO: 0008168 methyltransferase activity; PDB: 3G07_B. |
| >PRK13699 putative methylase; Provisional | Back alignment and domain information |
|---|
Probab=93.38 E-value=0.48 Score=38.10 Aligned_cols=43 Identities=19% Similarity=0.156 Sum_probs=27.5
Q ss_pred CCCCCccEEEEcccccCC-----c-------ChHHHHHHHHHHHHhcCCCCceEe
Q 026036 143 IPNPDWDLILASDILLYV-----K-------QYSNLIKSLSVLLKSYKPKDSQVG 185 (244)
Q Consensus 143 ~~~~~fD~I~~~~~l~~~-----~-------~~~~l~~~l~~~~~~lk~gG~~~~ 185 (244)
.+++++|+|+..++.... . ..+-+...+.+++|+|||||.+++
T Consensus 16 lpd~SVDLIiTDPPY~i~~~~~~~~~~~~~~~~ew~~~~l~E~~RVLKpgg~l~i 70 (227)
T PRK13699 16 FPDNAVDFILTDPPYLVGFRDRQGRTIAGDKTDEWLQPACNEMYRVLKKDALMVS 70 (227)
T ss_pred CCccccceEEeCCCcccccccCCCcccccccHHHHHHHHHHHHHHHcCCCCEEEE
Confidence 345678888876554210 0 012234788999999999987654
|
|
| >COG4301 Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=93.12 E-value=1.6 Score=35.41 Aligned_cols=122 Identities=13% Similarity=0.049 Sum_probs=68.3
Q ss_pred HHHHHHHHhhccCcccCCeEEEeCCCCcHHHHHHHHhC-----CCeEEEEeCChHHHHHHHHHhHHh-cCCCCCcceEee
Q 026036 62 TFSFAEWLMHHREWIERRRCIELGSGTGALAIFLRKAM-----NLDITTSDYNDQEIEDNIAYNSTT-NGITPALPHIKH 135 (244)
Q Consensus 62 ~~~l~~~~~~~~~~~~~~~VLdlG~G~G~~~~~~a~~~-----~~~v~~~D~~~~~l~~~~~~~~~~-~~~~~~~~~~~~ 135 (244)
+.++..+..+......+...+|||+|+..=+..+.... ..+++.+|++...+...++.-... .++ .+.-+..
T Consensus 63 aaIl~~~a~Eia~~~g~~~lveLGsGns~Ktr~Llda~~~~~~~~ryvpiDv~a~iL~~ta~ai~~~y~~l--~v~~l~~ 140 (321)
T COG4301 63 AAILQARAAEIASITGACTLVELGSGNSTKTRILLDALAHRGSLLRYVPIDVSASILRATATAILREYPGL--EVNALCG 140 (321)
T ss_pred HHHHHHHHHHHHHhhCcceEEEecCCccHHHHHHHHHhhhcCCcceeeeecccHHHHHHHHHHHHHhCCCC--eEeehhh
Confidence 34444443333334457899999999886655443332 467999999998765555443322 122 1111111
Q ss_pred ecCCCCCCC-C-CCccEEEEcccccCCcChHHHHHHHHHHHHhcCCCCceEee
Q 026036 136 SWGDAFPIP-N-PDWDLILASDILLYVKQYSNLIKSLSVLLKSYKPKDSQVGH 186 (244)
Q Consensus 136 ~~~~~~~~~-~-~~fD~I~~~~~l~~~~~~~~l~~~l~~~~~~lk~gG~~~~~ 186 (244)
+....+... . ++==.++....+ -.....+....+..+...++||-.+.+.
T Consensus 141 ~~~~~La~~~~~~~Rl~~flGStl-GN~tp~e~~~Fl~~l~~a~~pGd~~LlG 192 (321)
T COG4301 141 DYELALAELPRGGRRLFVFLGSTL-GNLTPGECAVFLTQLRGALRPGDYFLLG 192 (321)
T ss_pred hHHHHHhcccCCCeEEEEEecccc-cCCChHHHHHHHHHHHhcCCCcceEEEe
Confidence 221111111 1 122233334444 3345566778899999999999988876
|
|
| >cd08239 THR_DH_like L-threonine dehydrogenase (TDH)-like | Back alignment and domain information |
|---|
Probab=92.95 E-value=2.9 Score=35.30 Aligned_cols=97 Identities=15% Similarity=0.189 Sum_probs=53.5
Q ss_pred cCcccCCeEEEeCCC-CcHHHHHHHHhCCCe-EEEEeCChHHHHHHHHHhHHhcCCCCCcceEeeecCC--CC-CC-CCC
Q 026036 73 REWIERRRCIELGSG-TGALAIFLRKAMNLD-ITTSDYNDQEIEDNIAYNSTTNGITPALPHIKHSWGD--AF-PI-PNP 146 (244)
Q Consensus 73 ~~~~~~~~VLdlG~G-~G~~~~~~a~~~~~~-v~~~D~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~--~~-~~-~~~ 146 (244)
....+|.+||=+|+| .|..+..+++..+.+ |++++.+++.. +.+++. +... .+.....+ .. .. ...
T Consensus 159 ~~~~~g~~vlV~G~G~vG~~~~~~ak~~G~~~vi~~~~~~~~~-~~~~~~----ga~~---~i~~~~~~~~~~~~~~~~~ 230 (339)
T cd08239 159 VGVSGRDTVLVVGAGPVGLGALMLARALGAEDVIGVDPSPERL-ELAKAL----GADF---VINSGQDDVQEIRELTSGA 230 (339)
T ss_pred cCCCCCCEEEEECCCHHHHHHHHHHHHcCCCEEEEECCCHHHH-HHHHHh----CCCE---EEcCCcchHHHHHHHhCCC
Confidence 345578899998864 344455566666777 99999887654 444321 2210 11000000 00 01 123
Q ss_pred CccEEEEcccccCCcChHHHHHHHHHHHHhcCCCCceEee
Q 026036 147 DWDLILASDILLYVKQYSNLIKSLSVLLKSYKPKDSQVGH 186 (244)
Q Consensus 147 ~fD~I~~~~~l~~~~~~~~l~~~l~~~~~~lk~gG~~~~~ 186 (244)
.+|+|+-. . . .. ..+....+.++++|++++.
T Consensus 231 ~~d~vid~--~---g-~~---~~~~~~~~~l~~~G~~v~~ 261 (339)
T cd08239 231 GADVAIEC--S---G-NT---AARRLALEAVRPWGRLVLV 261 (339)
T ss_pred CCCEEEEC--C---C-CH---HHHHHHHHHhhcCCEEEEE
Confidence 68988742 2 1 12 3345567888999998765
|
MDR/AHD-like proteins, including a protein annotated as a threonine dehydrogenase. L-threonine dehydrogenase (TDH) catalyzes the zinc-dependent formation of 2-amino-3-ketobutyrate from L-threonine via NAD(H)-dependent oxidation. The zinc-dependent alcohol dehydrogenases (ADHs) catalyze the NAD(P)(H)-dependent interconversion of alcohols to aldehydes or ketones. Zinc-dependent ADHs are medium chain dehydrogenase/reductase type proteins (MDRs) and have a NAD(P)(H)-binding domain in a Rossmann fold of an beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. In addition to alcohol dehydrogenases, this group includes quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and generally have 2 tightly bound zinc at |
| >PF00107 ADH_zinc_N: Zinc-binding dehydrogenase; InterPro: IPR013149 Alcohol dehydrogenase (1 | Back alignment and domain information |
|---|
Probab=92.95 E-value=0.33 Score=34.86 Aligned_cols=81 Identities=20% Similarity=0.289 Sum_probs=53.0
Q ss_pred CCcHHHHHHHHhCCCeEEEEeCChHHHHHHHHHhHHhcCCCCCcceEeeecCCC-----C-C-CCCCCccEEEEcccccC
Q 026036 87 GTGALAIFLRKAMNLDITTSDYNDQEIEDNIAYNSTTNGITPALPHIKHSWGDA-----F-P-IPNPDWDLILASDILLY 159 (244)
Q Consensus 87 G~G~~~~~~a~~~~~~v~~~D~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~-~-~~~~~fD~I~~~~~l~~ 159 (244)
|.|..++.+|+..+.+|+++|.++..+ +.+++. +. ...++..+. + . .....+|+|+-. .
T Consensus 1 ~vG~~a~q~ak~~G~~vi~~~~~~~k~-~~~~~~----Ga-----~~~~~~~~~~~~~~i~~~~~~~~~d~vid~--~-- 66 (130)
T PF00107_consen 1 GVGLMAIQLAKAMGAKVIATDRSEEKL-ELAKEL----GA-----DHVIDYSDDDFVEQIRELTGGRGVDVVIDC--V-- 66 (130)
T ss_dssp HHHHHHHHHHHHTTSEEEEEESSHHHH-HHHHHT----TE-----SEEEETTTSSHHHHHHHHTTTSSEEEEEES--S--
T ss_pred ChHHHHHHHHHHcCCEEEEEECCHHHH-HHHHhh----cc-----cccccccccccccccccccccccceEEEEe--c--
Confidence 468888888888899999999998765 555442 22 111222221 0 1 112479988753 2
Q ss_pred CcChHHHHHHHHHHHHhcCCCCceEee
Q 026036 160 VKQYSNLIKSLSVLLKSYKPKDSQVGH 186 (244)
Q Consensus 160 ~~~~~~l~~~l~~~~~~lk~gG~~~~~ 186 (244)
..+ ..++....+++++|++++.
T Consensus 67 --g~~---~~~~~~~~~l~~~G~~v~v 88 (130)
T PF00107_consen 67 --GSG---DTLQEAIKLLRPGGRIVVV 88 (130)
T ss_dssp --SSH---HHHHHHHHHEEEEEEEEEE
T ss_pred --CcH---HHHHHHHHHhccCCEEEEE
Confidence 113 6778888999999998887
|
1.1.1 from EC) (ADH) catalyzes the reversible oxidation of alcohols to their corresponding acetaldehyde or ketone with the concomitant reduction of NAD: |
| >KOG2539 consensus Mitochondrial/chloroplast ribosome small subunit component [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=92.67 E-value=0.38 Score=42.27 Aligned_cols=112 Identities=13% Similarity=0.058 Sum_probs=61.6
Q ss_pred CcccCCeEEEeCCCCcHHHHHH---HHhCCCeEEEEeCChHHHHHHHHHhHHhcCCCCCcceEeeecC-CCCCCCC-CCc
Q 026036 74 EWIERRRCIELGSGTGALAIFL---RKAMNLDITTSDYNDQEIEDNIAYNSTTNGITPALPHIKHSWG-DAFPIPN-PDW 148 (244)
Q Consensus 74 ~~~~~~~VLdlG~G~G~~~~~~---a~~~~~~v~~~D~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~-~~f 148 (244)
+.+....++|+|+|.|.-.-++ .......++.||.+..|+ .....+.....-.+......+... ..++... ..|
T Consensus 197 p~f~pd~~~dfgsg~~~~~~a~~~lwr~t~~~~~~Vdrs~~~~-~~~e~~lr~~~~~g~~~v~~~~~~r~~~pi~~~~~y 275 (491)
T KOG2539|consen 197 PKFRPDLLRDFGSGAGNGGWAAVLLWRQTKREYSLVDRSRAML-KQSEKNLRDGSHIGEPIVRKLVFHRQRLPIDIKNGY 275 (491)
T ss_pred cccChHHHHHHHhhcccchhhhhhhcccccceeEeeccchHHH-HHHHHhhcChhhcCchhccccchhcccCCCCcccce
Confidence 3445568999998877543222 222256799999999886 444444332000011111110011 1123322 359
Q ss_pred cEEEEcccccCCcChHHHHHHHHHHH-HhcCCCCceEee
Q 026036 149 DLILASDILLYVKQYSNLIKSLSVLL-KSYKPKDSQVGH 186 (244)
Q Consensus 149 D~I~~~~~l~~~~~~~~l~~~l~~~~-~~lk~gG~~~~~ 186 (244)
|+|++++.+++..+........+.+. +..++|+.++++
T Consensus 276 Dlvi~ah~l~~~~s~~~R~~v~~s~~r~~~r~g~~lViI 314 (491)
T KOG2539|consen 276 DLVICAHKLHELGSKFSRLDVPESLWRKTDRSGYFLVII 314 (491)
T ss_pred eeEEeeeeeeccCCchhhhhhhHHHHHhccCCCceEEEE
Confidence 99999999966555444445555544 556677777776
|
|
| >KOG4589 consensus Cell division protein FtsJ [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=92.63 E-value=0.18 Score=38.97 Aligned_cols=37 Identities=11% Similarity=0.079 Sum_probs=30.8
Q ss_pred CcccCCeEEEeCCCCcHHHHHHHHhC--CCeEEEEeCCh
Q 026036 74 EWIERRRCIELGSGTGALAIFLRKAM--NLDITTSDYND 110 (244)
Q Consensus 74 ~~~~~~~VLdlG~G~G~~~~~~a~~~--~~~v~~~D~~~ 110 (244)
.+.++.+|||+||-.|..+..+.++. ...|.|+|+-.
T Consensus 66 ~l~p~~~VlD~G~APGsWsQVavqr~~p~g~v~gVDllh 104 (232)
T KOG4589|consen 66 FLRPEDTVLDCGAAPGSWSQVAVQRVNPNGMVLGVDLLH 104 (232)
T ss_pred ccCCCCEEEEccCCCChHHHHHHHhhCCCceEEEEeeee
Confidence 35689999999999999998887765 45699999854
|
|
| >TIGR03366 HpnZ_proposed putative phosphonate catabolism associated alcohol dehydrogenase | Back alignment and domain information |
|---|
Probab=92.39 E-value=2.2 Score=35.13 Aligned_cols=96 Identities=16% Similarity=0.101 Sum_probs=53.0
Q ss_pred cccCCeEEEeCCC-CcHHHHHHHHhCCCe-EEEEeCChHHHHHHHHHhHHhcCCCCCcceEeeecCCCC-CC-CCCCccE
Q 026036 75 WIERRRCIELGSG-TGALAIFLRKAMNLD-ITTSDYNDQEIEDNIAYNSTTNGITPALPHIKHSWGDAF-PI-PNPDWDL 150 (244)
Q Consensus 75 ~~~~~~VLdlG~G-~G~~~~~~a~~~~~~-v~~~D~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~-~~~~fD~ 150 (244)
..++.+||=.|+| .|..+..+++..+.+ |+++|.+++.+ +.+++. +....+.... ..+.. .. ....+|+
T Consensus 118 ~~~g~~VlV~G~G~vG~~~~~~ak~~G~~~Vi~~~~~~~r~-~~a~~~----Ga~~~i~~~~--~~~~~~~~~~~~g~d~ 190 (280)
T TIGR03366 118 DLKGRRVLVVGAGMLGLTAAAAAAAAGAARVVAADPSPDRR-ELALSF----GATALAEPEV--LAERQGGLQNGRGVDV 190 (280)
T ss_pred CCCCCEEEEECCCHHHHHHHHHHHHcCCCEEEEECCCHHHH-HHHHHc----CCcEecCchh--hHHHHHHHhCCCCCCE
Confidence 3478899999874 444555566666765 99999887654 444331 1110000000 00000 00 1235888
Q ss_pred EEEcccccCCcChHHHHHHHHHHHHhcCCCCceEee
Q 026036 151 ILASDILLYVKQYSNLIKSLSVLLKSYKPKDSQVGH 186 (244)
Q Consensus 151 I~~~~~l~~~~~~~~l~~~l~~~~~~lk~gG~~~~~ 186 (244)
|+-. . ..+ ..++...+.++++|++++.
T Consensus 191 vid~--~----G~~---~~~~~~~~~l~~~G~iv~~ 217 (280)
T TIGR03366 191 ALEF--S----GAT---AAVRACLESLDVGGTAVLA 217 (280)
T ss_pred EEEC--C----CCh---HHHHHHHHHhcCCCEEEEe
Confidence 8752 2 112 4566678889999998765
|
This clade of zinc-binding alcohol dehydrogenases (members of pfam00107) are repeatedly associated with genes proposed to be involved with the catabolism of phosphonate compounds. |
| >cd08230 glucose_DH Glucose dehydrogenase | Back alignment and domain information |
|---|
Probab=92.31 E-value=1.5 Score=37.47 Aligned_cols=95 Identities=20% Similarity=0.231 Sum_probs=53.5
Q ss_pred cccCCeEEEeCCC-CcHHHHHHHHhCCCeEEEEeC---ChHHHHHHHHHhHHhcCCCCCcceEeeecCCCCCCCCCCccE
Q 026036 75 WIERRRCIELGSG-TGALAIFLRKAMNLDITTSDY---NDQEIEDNIAYNSTTNGITPALPHIKHSWGDAFPIPNPDWDL 150 (244)
Q Consensus 75 ~~~~~~VLdlG~G-~G~~~~~~a~~~~~~v~~~D~---~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fD~ 150 (244)
..++.+||=+|+| .|.++..+++..+.+|++++. +++.+ +.+++ .+.. .+.....++.+ . .....+|+
T Consensus 170 ~~~g~~vlI~G~G~vG~~a~q~ak~~G~~vi~~~~~~~~~~~~-~~~~~----~Ga~-~v~~~~~~~~~-~-~~~~~~d~ 241 (355)
T cd08230 170 TWNPRRALVLGAGPIGLLAALLLRLRGFEVYVLNRRDPPDPKA-DIVEE----LGAT-YVNSSKTPVAE-V-KLVGEFDL 241 (355)
T ss_pred cCCCCEEEEECCCHHHHHHHHHHHHcCCeEEEEecCCCCHHHH-HHHHH----cCCE-EecCCccchhh-h-hhcCCCCE
Confidence 3478899999875 456666677777889999987 44433 33332 2221 00000000101 0 11236888
Q ss_pred EEEcccccCCcChHHHHHHHHHHHHhcCCCCceEee
Q 026036 151 ILASDILLYVKQYSNLIKSLSVLLKSYKPKDSQVGH 186 (244)
Q Consensus 151 I~~~~~l~~~~~~~~l~~~l~~~~~~lk~gG~~~~~ 186 (244)
|+-. . ..+ ..+....+.+++||++++.
T Consensus 242 vid~--~----g~~---~~~~~~~~~l~~~G~~v~~ 268 (355)
T cd08230 242 IIEA--T----GVP---PLAFEALPALAPNGVVILF 268 (355)
T ss_pred EEEC--c----CCH---HHHHHHHHHccCCcEEEEE
Confidence 8753 2 112 3566778999999987765
|
Glucose dehydrogenase (GlcDH), a member of the medium chain dehydrogenase/zinc-dependent alcohol dehydrogenase-like family, catalyzes the NADP(+)-dependent oxidation of glucose to gluconate, the first step in the Entner-Doudoroff pathway, an alternative to or substitute for glycolysis or the pentose phosphate pathway. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossman fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contai |
| >PF00145 DNA_methylase: C-5 cytosine-specific DNA methylase; InterPro: IPR001525 C-5 cytosine-specific DNA methylases (2 | Back alignment and domain information |
|---|
Probab=91.87 E-value=0.34 Score=40.79 Aligned_cols=42 Identities=19% Similarity=0.190 Sum_probs=34.0
Q ss_pred eEEEeCCCCcHHHHHHHHhCCCeEEEEeCChHHHHHHHHHhHH
Q 026036 80 RCIELGSGTGALAIFLRKAMNLDITTSDYNDQEIEDNIAYNST 122 (244)
Q Consensus 80 ~VLdlG~G~G~~~~~~a~~~~~~v~~~D~~~~~l~~~~~~~~~ 122 (244)
+++||-||.|.+++.+...+..-|.++|+++.+. +..+.|-.
T Consensus 2 ~~~dlFsG~Gg~~~g~~~ag~~~~~a~e~~~~a~-~~y~~N~~ 43 (335)
T PF00145_consen 2 KVIDLFSGIGGFSLGLEQAGFEVVWAVEIDPDAC-ETYKANFP 43 (335)
T ss_dssp EEEEET-TTTHHHHHHHHTTEEEEEEEESSHHHH-HHHHHHHT
T ss_pred cEEEEccCccHHHHHHHhcCcEEEEEeecCHHHH-Hhhhhccc
Confidence 7999999999999999877655699999999876 66666654
|
1.1.37 from EC) (C5 Mtase) are enzymes that specifically methylate the C-5 carbon of cytosines in DNA to produce C5-methylcytosine [, , ]. In mammalian cells, cytosine-specific methyltransferases methylate certain CpG sequences, which are believed to modulate gene expression and cell differentiation. In bacteria, these enzymes are a component of restriction-modification systems and serve as valuable tools for the manipulation of DNA [, ]. The structure of HhaI methyltransferase (M.HhaI) has been resolved to 2.5 A []: the molecule folds into 2 domains - a larger catalytic domain containing catalytic and cofactor binding sites, and a smaller DNA recognition domain.; GO: 0003677 DNA binding, 0006306 DNA methylation; PDB: 4DA4_A 3PT6_B 3AV6_A 3AV5_A 3AV4_A 3PT9_A 1DCT_A 3LX6_A 3ME5_A 2QRV_A .... |
| >TIGR00675 dcm DNA-methyltransferase (dcm) | Back alignment and domain information |
|---|
Probab=91.63 E-value=0.48 Score=40.09 Aligned_cols=40 Identities=18% Similarity=0.144 Sum_probs=30.9
Q ss_pred EEEeCCCCcHHHHHHHHhCCCeEEEEeCChHHHHHHHHHhH
Q 026036 81 CIELGSGTGALAIFLRKAMNLDITTSDYNDQEIEDNIAYNS 121 (244)
Q Consensus 81 VLdlG~G~G~~~~~~a~~~~~~v~~~D~~~~~l~~~~~~~~ 121 (244)
|+||-||.|.++..+...+..-+.++|+++.+. +..+.|-
T Consensus 1 vidLF~G~GG~~~Gl~~aG~~~~~a~e~~~~a~-~ty~~N~ 40 (315)
T TIGR00675 1 FIDLFAGIGGIRLGFEQAGFKCVFASEIDKYAQ-KTYEANF 40 (315)
T ss_pred CEEEecCccHHHHHHHHcCCeEEEEEeCCHHHH-HHHHHhC
Confidence 689999999999888766433467899999876 6666654
|
All proteins in this family for which functions are known are DNA-cytosine methyltransferases. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). |
| >PF11899 DUF3419: Protein of unknown function (DUF3419); InterPro: IPR021829 This family of proteins are functionally uncharacterised | Back alignment and domain information |
|---|
Probab=91.52 E-value=0.73 Score=40.03 Aligned_cols=53 Identities=21% Similarity=0.099 Sum_probs=37.2
Q ss_pred ceeechHHHHHHHHhhccCcccCCeEEEeCCCCcHHHHHHHHhCCCeEEEEeCChHHH
Q 026036 56 NFLWPGTFSFAEWLMHHREWIERRRCIELGSGTGALAIFLRKAMNLDITTSDYNDQEI 113 (244)
Q Consensus 56 ~~~w~~~~~l~~~~~~~~~~~~~~~VLdlG~G~G~~~~~~a~~~~~~v~~~D~~~~~l 113 (244)
...|.+..+--+.+ .+.++.+||-|.+ .|...+.++.....+|++||+|+..+
T Consensus 18 ~~~WEDp~vD~~aL----~i~~~d~vl~ItS-aG~N~L~yL~~~P~~I~aVDlNp~Q~ 70 (380)
T PF11899_consen 18 AQCWEDPRVDMEAL----NIGPDDRVLTITS-AGCNALDYLLAGPKRIHAVDLNPAQN 70 (380)
T ss_pred ccccCCcHHHHHHh----CCCCCCeEEEEcc-CCchHHHHHhcCCceEEEEeCCHHHH
Confidence 44677776655553 5568889999954 45555555556689999999999753
|
This protein is found in bacteria and eukaryotes. Proteins in this family are typically between 398 to 802 amino acids in length. |
| >TIGR00497 hsdM type I restriction system adenine methylase (hsdM) | Back alignment and domain information |
|---|
Probab=91.46 E-value=4.1 Score=36.87 Aligned_cols=107 Identities=9% Similarity=0.082 Sum_probs=64.3
Q ss_pred cCCeEEEeCCCCcHHHHHHHHhC-----CCeEEEEeCChHHHHHHHHHhHHhcCCCCCcceEeeecCCCCC---C-CCCC
Q 026036 77 ERRRCIELGSGTGALAIFLRKAM-----NLDITTSDYNDQEIEDNIAYNSTTNGITPALPHIKHSWGDAFP---I-PNPD 147 (244)
Q Consensus 77 ~~~~VLdlG~G~G~~~~~~a~~~-----~~~v~~~D~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~-~~~~ 147 (244)
++..|.|..||+|.+.+...... ...+++.+....+. ..+..|...++.... .....+++.+. . ...+
T Consensus 217 p~~~~~Dp~~Gsg~~L~~~~~~~~~~qe~~~~~gqe~~~~~~-~~a~mnm~l~~~~~~--t~~~~~~dtl~~~d~~~~~~ 293 (501)
T TIGR00497 217 TVDDVYDMACGSGSLLLQVIKVLGEKTSLVSYYGQEINHTTY-NLCRMNMILHNIDYA--NFNIINADTLTTKEWENENG 293 (501)
T ss_pred CCCcccccccchHHHHHHHHHHhcccccceeEEEEeCchHHH-HHHHHHHHHcCCCcc--ccCcccCCcCCCcccccccc
Confidence 55789999999998876543321 24589999999875 667767655544211 11111223222 1 2346
Q ss_pred ccEEEEcccccC-C--cC-------------------hHHHHHHHHHHHHhcCCCCceEee
Q 026036 148 WDLILASDILLY-V--KQ-------------------YSNLIKSLSVLLKSYKPKDSQVGH 186 (244)
Q Consensus 148 fD~I~~~~~l~~-~--~~-------------------~~~l~~~l~~~~~~lk~gG~~~~~ 186 (244)
||.|++++++-. + .. ...=...+..+...|++||+-.++
T Consensus 294 ~D~v~~NpPf~~~~~~~~~~~~~~~d~~~~~~~l~~~~~~~~afi~h~~~~L~~gG~~aiI 354 (501)
T TIGR00497 294 FEVVVSNPPYSISWAGDKKSNLVSDVRFKDAGTLAPNSKADLAFVLHALYVLGQEGTAAIV 354 (501)
T ss_pred CCEEeecCCcccccccccccccccccchhcccCCCCCchhhHHHHHHHHHhcCCCCeEEEE
Confidence 999998876411 0 00 012235667778899999987666
|
Function: methylation of specific adenine residues; required for both restriction and modification activities. The ECOR124/3 I enzyme recognizes 5'GAA(N7)RTCG. for E.coli see (J. Mol. Biol. 257: 960-969 (1996)). |
| >PLN03154 putative allyl alcohol dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=91.24 E-value=2.8 Score=35.80 Aligned_cols=100 Identities=14% Similarity=0.046 Sum_probs=58.1
Q ss_pred cCcccCCeEEEeCC--CCcHHHHHHHHhCCCeEEEEeCChHHHHHHHHHhHHhcCCCCCcceEee-ecCCCC-CCCCCCc
Q 026036 73 REWIERRRCIELGS--GTGALAIFLRKAMNLDITTSDYNDQEIEDNIAYNSTTNGITPALPHIKH-SWGDAF-PIPNPDW 148 (244)
Q Consensus 73 ~~~~~~~~VLdlG~--G~G~~~~~~a~~~~~~v~~~D~~~~~l~~~~~~~~~~~~~~~~~~~~~~-~~~~~~-~~~~~~f 148 (244)
....+|.+||=.|+ |.|..++.+|+..+.+|++++.+++.. +.++... +....+....- ++.+.. ....+.+
T Consensus 154 ~~~~~g~~VlV~GaaG~vG~~aiqlAk~~G~~Vi~~~~~~~k~-~~~~~~l---Ga~~vi~~~~~~~~~~~i~~~~~~gv 229 (348)
T PLN03154 154 CSPKKGDSVFVSAASGAVGQLVGQLAKLHGCYVVGSAGSSQKV-DLLKNKL---GFDEAFNYKEEPDLDAALKRYFPEGI 229 (348)
T ss_pred cCCCCCCEEEEecCccHHHHHHHHHHHHcCCEEEEEcCCHHHH-HHHHHhc---CCCEEEECCCcccHHHHHHHHCCCCc
Confidence 34567889999987 377777778888888999999887654 4443211 22100000000 000000 0112358
Q ss_pred cEEEEcccccCCcChHHHHHHHHHHHHhcCCCCceEee
Q 026036 149 DLILASDILLYVKQYSNLIKSLSVLLKSYKPKDSQVGH 186 (244)
Q Consensus 149 D~I~~~~~l~~~~~~~~l~~~l~~~~~~lk~gG~~~~~ 186 (244)
|+|+- +. . . ..+....+.+++||++++.
T Consensus 230 D~v~d--~v---G--~---~~~~~~~~~l~~~G~iv~~ 257 (348)
T PLN03154 230 DIYFD--NV---G--G---DMLDAALLNMKIHGRIAVC 257 (348)
T ss_pred EEEEE--CC---C--H---HHHHHHHHHhccCCEEEEE
Confidence 88874 33 1 2 4566778899999998765
|
|
| >KOG1099 consensus SAM-dependent methyltransferase/cell division protein FtsJ [Cell cycle control, cell division, chromosome partitioning; General function prediction only] | Back alignment and domain information |
|---|
Probab=91.21 E-value=0.48 Score=37.83 Aligned_cols=98 Identities=18% Similarity=0.229 Sum_probs=56.6
Q ss_pred cccC-CeEEEeCCCCcHHHHHHHHhCC-------C---eEEEEeCChHHHHHHHHHhHHhcCCCCCcceEeeecCCC---
Q 026036 75 WIER-RRCIELGSGTGALAIFLRKAMN-------L---DITTSDYNDQEIEDNIAYNSTTNGITPALPHIKHSWGDA--- 140 (244)
Q Consensus 75 ~~~~-~~VLdlG~G~G~~~~~~a~~~~-------~---~v~~~D~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~--- 140 (244)
+++| .||+||++-.|..+..++++.. . +|+++|+.+-+ . +++. ..++.+....
T Consensus 38 i~~gv~rvVDLCAAPGSWSQvlSrkL~~~~~~~~~~~~kIVaVDLQ~Ma--P----------I~GV-~qlq~DIT~~sta 104 (294)
T KOG1099|consen 38 IFEGVKRVVDLCAAPGSWSQVLSRKLYKPLPSSGERDKKIVAVDLQPMA--P----------IEGV-IQLQGDITSASTA 104 (294)
T ss_pred HHhhhhHHhhhhcCCCcHHHHHHHHHhccCCCcchhhccEEEEecccCC--c----------cCce-EEeecccCCHhHH
Confidence 3444 4899999999999999987751 1 29999987621 0 1000 0111111111
Q ss_pred ---C-CCCCCCccEEEEcccccCCcC---------hHHHHHHHHHHHHhcCCCCceEee
Q 026036 141 ---F-PIPNPDWDLILASDILLYVKQ---------YSNLIKSLSVLLKSYKPKDSQVGH 186 (244)
Q Consensus 141 ---~-~~~~~~fD~I~~~~~l~~~~~---------~~~l~~~l~~~~~~lk~gG~~~~~ 186 (244)
+ .+..++.|+|+|-..- .... .+-+..++.-...+|||||.|+--
T Consensus 105 e~Ii~hfggekAdlVvcDGAP-DvTGlHd~DEy~Q~qLllaAl~i~t~Vlk~Gg~FVaK 162 (294)
T KOG1099|consen 105 EAIIEHFGGEKADLVVCDGAP-DVTGLHDLDEYVQAQLLLAALNIATCVLKPGGSFVAK 162 (294)
T ss_pred HHHHHHhCCCCccEEEeCCCC-CccccccHHHHHHHHHHHHHHHHHhheecCCCeeehh
Confidence 0 1233578888884332 2211 223445566667899999988765
|
|
| >TIGR03451 mycoS_dep_FDH mycothiol-dependent formaldehyde dehydrogenase | Back alignment and domain information |
|---|
Probab=91.18 E-value=0.5 Score=40.48 Aligned_cols=99 Identities=13% Similarity=0.079 Sum_probs=54.9
Q ss_pred CcccCCeEEEeCCC-CcHHHHHHHHhCCC-eEEEEeCChHHHHHHHHHhHHhcCCCCCcceEeeecCCCC-CC-CCCCcc
Q 026036 74 EWIERRRCIELGSG-TGALAIFLRKAMNL-DITTSDYNDQEIEDNIAYNSTTNGITPALPHIKHSWGDAF-PI-PNPDWD 149 (244)
Q Consensus 74 ~~~~~~~VLdlG~G-~G~~~~~~a~~~~~-~v~~~D~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~-~~~~fD 149 (244)
...++.+||=.||| .|..++.+|+..+. +|+++|.+++.. +.+++. +....+.....++.+.. .. ....+|
T Consensus 173 ~~~~g~~VlV~G~g~vG~~a~~~ak~~G~~~Vi~~~~~~~~~-~~~~~~----Ga~~~i~~~~~~~~~~i~~~~~~~g~d 247 (358)
T TIGR03451 173 GVKRGDSVAVIGCGGVGDAAIAGAALAGASKIIAVDIDDRKL-EWAREF----GATHTVNSSGTDPVEAIRALTGGFGAD 247 (358)
T ss_pred CCCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCCHHHH-HHHHHc----CCceEEcCCCcCHHHHHHHHhCCCCCC
Confidence 45678899998874 35555666776676 599999988754 444321 22100000000110000 01 123589
Q ss_pred EEEEcccccCCcChHHHHHHHHHHHHhcCCCCceEee
Q 026036 150 LILASDILLYVKQYSNLIKSLSVLLKSYKPKDSQVGH 186 (244)
Q Consensus 150 ~I~~~~~l~~~~~~~~l~~~l~~~~~~lk~gG~~~~~ 186 (244)
+|+- +. . .+ .+++...+.+++||++++.
T Consensus 248 ~vid--~~---g-~~---~~~~~~~~~~~~~G~iv~~ 275 (358)
T TIGR03451 248 VVID--AV---G-RP---ETYKQAFYARDLAGTVVLV 275 (358)
T ss_pred EEEE--CC---C-CH---HHHHHHHHHhccCCEEEEE
Confidence 8874 33 1 12 4556677889999998765
|
Members of this protein family are mycothiol-dependent formaldehyde dehydrogenase (EC 1.2.1.66). This protein is found, so far, only in the Actinobacteria (Mycobacterium sp., Streptomyces sp., Corynebacterium sp., and related species), where mycothione replaces glutathione. |
| >cd08281 liver_ADH_like1 Zinc-dependent alcohol dehydrogenases (ADH) and class III ADG (AKA formaldehyde dehydrogenase) | Back alignment and domain information |
|---|
Probab=90.54 E-value=1.6 Score=37.61 Aligned_cols=100 Identities=12% Similarity=0.086 Sum_probs=54.8
Q ss_pred cCcccCCeEEEeCCC-CcHHHHHHHHhCCC-eEEEEeCChHHHHHHHHHhHHhcCCCCCcceEeeecCCCC-CCCCCCcc
Q 026036 73 REWIERRRCIELGSG-TGALAIFLRKAMNL-DITTSDYNDQEIEDNIAYNSTTNGITPALPHIKHSWGDAF-PIPNPDWD 149 (244)
Q Consensus 73 ~~~~~~~~VLdlG~G-~G~~~~~~a~~~~~-~v~~~D~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~fD 149 (244)
....++.+||=.|+| .|..+..+++..+. +|+++|.+++.+ +.+++. +....+.....++.+.. ....+.+|
T Consensus 187 ~~i~~g~~VlV~G~G~vG~~a~~lak~~G~~~Vi~~~~~~~r~-~~a~~~----Ga~~~i~~~~~~~~~~i~~~~~~g~d 261 (371)
T cd08281 187 AGVRPGQSVAVVGLGGVGLSALLGAVAAGASQVVAVDLNEDKL-ALAREL----GATATVNAGDPNAVEQVRELTGGGVD 261 (371)
T ss_pred cCCCCCCEEEEECCCHHHHHHHHHHHHcCCCcEEEEcCCHHHH-HHHHHc----CCceEeCCCchhHHHHHHHHhCCCCC
Confidence 345678888888875 44555556666676 699999988764 444331 22100000000000000 01122588
Q ss_pred EEEEcccccCCcChHHHHHHHHHHHHhcCCCCceEee
Q 026036 150 LILASDILLYVKQYSNLIKSLSVLLKSYKPKDSQVGH 186 (244)
Q Consensus 150 ~I~~~~~l~~~~~~~~l~~~l~~~~~~lk~gG~~~~~ 186 (244)
+|+- +. . .+ ..+....+.++++|++++.
T Consensus 262 ~vid--~~---G-~~---~~~~~~~~~l~~~G~iv~~ 289 (371)
T cd08281 262 YAFE--MA---G-SV---PALETAYEITRRGGTTVTA 289 (371)
T ss_pred EEEE--CC---C-Ch---HHHHHHHHHHhcCCEEEEE
Confidence 8874 22 1 12 4556677889999998765
|
NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. This group contains members identified as zinc dependent alcohol dehydrogenases (ADH), and class III ADG (aka formaldehyde dehydrogenase, FDH). Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. Class III ADH are also know as glutathione-dependent formaldehyde dehyd |
| >cd08232 idonate-5-DH L-idonate 5-dehydrogenase | Back alignment and domain information |
|---|
Probab=90.34 E-value=3.2 Score=34.98 Aligned_cols=93 Identities=18% Similarity=0.323 Sum_probs=53.2
Q ss_pred cCCeEEEeCCCC-cHHHHHHHHhCCC-eEEEEeCChHHHHHHHHHhHHhcCCCCCcceEeeecC--CCCCCCCCCccEEE
Q 026036 77 ERRRCIELGSGT-GALAIFLRKAMNL-DITTSDYNDQEIEDNIAYNSTTNGITPALPHIKHSWG--DAFPIPNPDWDLIL 152 (244)
Q Consensus 77 ~~~~VLdlG~G~-G~~~~~~a~~~~~-~v~~~D~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~fD~I~ 152 (244)
++.+||-.|||. |..++.+++..+. +|++++.++... +.++.. +.. ..+..... .........+|+|+
T Consensus 165 ~~~~VLI~g~g~vG~~~~~lak~~G~~~v~~~~~s~~~~-~~~~~~----g~~---~vi~~~~~~~~~~~~~~~~vd~vl 236 (339)
T cd08232 165 AGKRVLVTGAGPIGALVVAAARRAGAAEIVATDLADAPL-AVARAM----GAD---ETVNLARDPLAAYAADKGDFDVVF 236 (339)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHcCCcEEEEECCCHHHH-HHHHHc----CCC---EEEcCCchhhhhhhccCCCccEEE
Confidence 788999988763 5555666666676 799999887654 433321 110 01100000 00111123589988
Q ss_pred EcccccCCcChHHHHHHHHHHHHhcCCCCceEee
Q 026036 153 ASDILLYVKQYSNLIKSLSVLLKSYKPKDSQVGH 186 (244)
Q Consensus 153 ~~~~l~~~~~~~~l~~~l~~~~~~lk~gG~~~~~ 186 (244)
..-. .. ..++.+.+.|+++|+++..
T Consensus 237 d~~g------~~---~~~~~~~~~L~~~G~~v~~ 261 (339)
T cd08232 237 EASG------AP---AALASALRVVRPGGTVVQV 261 (339)
T ss_pred ECCC------CH---HHHHHHHHHHhcCCEEEEE
Confidence 6321 12 3466778899999998764
|
L-idonate 5-dehydrogenase (L-ido 5-DH ) catalyzes the conversion of L-lodonate to 5-ketogluconate in the metabolism of L-Idonate to 6-P-gluconate. In E. coli, this GntII pathway is a subsidiary pathway to the canonical GntI system, which also phosphorylates and transports gluconate. L-ido 5-DH is found in an operon with a regulator indR, transporter idnT, 5-keto-D-gluconate 5-reductase, and Gnt kinase. L-ido 5-DH is a zinc-dependent alcohol dehydrogenase-like protein. The alcohol dehydrogenase ADH-like family of proteins is a diverse group of proteins related to the first identified member, class I mammalian ADH. This group is also called the medium chain dehydrogenases/reductase family (MDR) which displays a broad range of activities and are distinguished from the smaller short chain dehydrogenases(~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domai |
| >KOG1562 consensus Spermidine synthase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=90.20 E-value=1.1 Score=37.26 Aligned_cols=109 Identities=16% Similarity=0.126 Sum_probs=64.0
Q ss_pred ccCCeEEEeCCCCcHHHHHHHHhC-CCeEEEEeCChHHHHHHHHHhHHhcCCCCCcceEeeecCCCCC---C-CCCCccE
Q 026036 76 IERRRCIELGSGTGALAIFLRKAM-NLDITTSDYNDQEIEDNIAYNSTTNGITPALPHIKHSWGDAFP---I-PNPDWDL 150 (244)
Q Consensus 76 ~~~~~VLdlG~G~G~~~~~~a~~~-~~~v~~~D~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~-~~~~fD~ 150 (244)
...++||=+|.|-|.+....++.- -.++..+|++...+ +.-++....-.....-..+.+..+|... . ..++||+
T Consensus 120 ~npkkvlVVgggDggvlrevikH~~ve~i~~~eiD~~Vi-e~sk~y~p~la~gy~~~~v~l~iGDG~~fl~~~~~~~~dV 198 (337)
T KOG1562|consen 120 PNPKKVLVVGGGDGGVLREVIKHKSVENILLCEIDENVI-ESSKQYLPTLACGYEGKKVKLLIGDGFLFLEDLKENPFDV 198 (337)
T ss_pred CCCCeEEEEecCCccceeeeeccccccceeeehhhHHHH-HHHHHHhHHHhcccCCCceEEEeccHHHHHHHhccCCceE
Confidence 355799999999998876555432 34588888887654 4444322211111222344555555422 1 2468999
Q ss_pred EEE--cccccCCcChHHHHHHHHHHHHhcCCCCceEee
Q 026036 151 ILA--SDILLYVKQYSNLIKSLSVLLKSYKPKDSQVGH 186 (244)
Q Consensus 151 I~~--~~~l~~~~~~~~l~~~l~~~~~~lk~gG~~~~~ 186 (244)
|+. ++++ -....--....++.+.+.||++|.++..
T Consensus 199 ii~dssdpv-gpa~~lf~~~~~~~v~~aLk~dgv~~~q 235 (337)
T KOG1562|consen 199 IITDSSDPV-GPACALFQKPYFGLVLDALKGDGVVCTQ 235 (337)
T ss_pred EEEecCCcc-chHHHHHHHHHHHHHHHhhCCCcEEEEe
Confidence 986 3333 1111111236677888999999987776
|
|
| >TIGR00561 pntA NAD(P) transhydrogenase, alpha subunit | Back alignment and domain information |
|---|
Probab=89.74 E-value=1.4 Score=39.84 Aligned_cols=97 Identities=14% Similarity=0.240 Sum_probs=57.4
Q ss_pred ccCCeEEEeCCC-CcHHHHHHHHhCCCeEEEEeCChHHHHHHHHHhHHhcCCCCCcceEeeecCC--------------C
Q 026036 76 IERRRCIELGSG-TGALAIFLRKAMNLDITTSDYNDQEIEDNIAYNSTTNGITPALPHIKHSWGD--------------A 140 (244)
Q Consensus 76 ~~~~~VLdlG~G-~G~~~~~~a~~~~~~v~~~D~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~--------------~ 140 (244)
.++.+|+=+||| .|..+..+++..++.|+++|.+++.+ +.++. . +. ..+.++..+ .
T Consensus 162 vp~akVlViGaG~iGl~Aa~~ak~lGA~V~v~d~~~~rl-e~a~~-l---Ga----~~v~v~~~e~g~~~~gYa~~~s~~ 232 (511)
T TIGR00561 162 VPPAKVLVIGAGVAGLAAIGAANSLGAIVRAFDTRPEVK-EQVQS-M---GA----EFLELDFKEEGGSGDGYAKVMSEE 232 (511)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCHHHH-HHHHH-c---CC----eEEeccccccccccccceeecCHH
Confidence 356899999998 56777777777788999999998754 44332 1 11 111111100 0
Q ss_pred --------CCCCCCCccEEEEcccccCCcChHHHHHHHHHHHHhcCCCCceE
Q 026036 141 --------FPIPNPDWDLILASDILLYVKQYSNLIKSLSVLLKSYKPKDSQV 184 (244)
Q Consensus 141 --------~~~~~~~fD~I~~~~~l~~~~~~~~l~~~l~~~~~~lk~gG~~~ 184 (244)
+......+|+|+..-.+ .....+. =..++..+.+|||+.++
T Consensus 233 ~~~~~~~~~~e~~~~~DIVI~Tali-pG~~aP~--Lit~emv~~MKpGsvIV 281 (511)
T TIGR00561 233 FIAAEMELFAAQAKEVDIIITTALI-PGKPAPK--LITEEMVDSMKAGSVIV 281 (511)
T ss_pred HHHHHHHHHHHHhCCCCEEEECccc-CCCCCCe--eehHHHHhhCCCCCEEE
Confidence 01112469999876544 2222221 23456788899998644
|
In some species, such as Rhodospirillum rubrum, the alpha chain is replaced by two shorter chains, both with some homology to the full-length alpha chain modeled here. These score below the trusted cutoff. |
| >COG0604 Qor NADPH:quinone reductase and related Zn-dependent oxidoreductases [Energy production and conversion / General function prediction only] | Back alignment and domain information |
|---|
Probab=89.25 E-value=1.5 Score=37.29 Aligned_cols=99 Identities=14% Similarity=0.216 Sum_probs=58.1
Q ss_pred cCcccCCeEEEeCC--CCcHHHHHHHHhCCCeEEEEeCChHHHHHHHHHhHHhcCCCCCcceEeeecCCCCC-CC-CCCc
Q 026036 73 REWIERRRCIELGS--GTGALAIFLRKAMNLDITTSDYNDQEIEDNIAYNSTTNGITPALPHIKHSWGDAFP-IP-NPDW 148 (244)
Q Consensus 73 ~~~~~~~~VLdlG~--G~G~~~~~~a~~~~~~v~~~D~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~-~~~f 148 (244)
....+|.+||=.|+ |.|.+++-+|+..+..++++-.+++.. +.++.. +....+....-+|.+... .. ...+
T Consensus 138 ~~l~~g~~VLV~gaaGgVG~~aiQlAk~~G~~~v~~~~s~~k~-~~~~~l----GAd~vi~y~~~~~~~~v~~~t~g~gv 212 (326)
T COG0604 138 AGLKPGETVLVHGAAGGVGSAAIQLAKALGATVVAVVSSSEKL-ELLKEL----GADHVINYREEDFVEQVRELTGGKGV 212 (326)
T ss_pred cCCCCCCEEEEecCCchHHHHHHHHHHHcCCcEEEEecCHHHH-HHHHhc----CCCEEEcCCcccHHHHHHHHcCCCCc
Confidence 34556899999985 566777888888775777777766544 333322 221111111112222221 11 2369
Q ss_pred cEEEEcccccCCcChHHHHHHHHHHHHhcCCCCceEee
Q 026036 149 DLILASDILLYVKQYSNLIKSLSVLLKSYKPKDSQVGH 186 (244)
Q Consensus 149 D~I~~~~~l~~~~~~~~l~~~l~~~~~~lk~gG~~~~~ 186 (244)
|+|+-. + -. .++....+.|+++|+++..
T Consensus 213 Dvv~D~--v-----G~---~~~~~~l~~l~~~G~lv~i 240 (326)
T COG0604 213 DVVLDT--V-----GG---DTFAASLAALAPGGRLVSI 240 (326)
T ss_pred eEEEEC--C-----CH---HHHHHHHHHhccCCEEEEE
Confidence 998852 2 22 5666678889999998876
|
|
| >COG1255 Uncharacterized protein conserved in archaea [Function unknown] | Back alignment and domain information |
|---|
Probab=89.22 E-value=4.9 Score=28.53 Aligned_cols=86 Identities=16% Similarity=0.179 Sum_probs=48.0
Q ss_pred CeEEEeCCCCcH-HHHHHHHhCCCeEEEEeCChHHHHHHHHHhHHhcCCCCCcceEeeecCCCCCCCCCCccEEEEcccc
Q 026036 79 RRCIELGSGTGA-LAIFLRKAMNLDITTSDYNDQEIEDNIAYNSTTNGITPALPHIKHSWGDAFPIPNPDWDLILASDIL 157 (244)
Q Consensus 79 ~~VLdlG~G~G~-~~~~~a~~~~~~v~~~D~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fD~I~~~~~l 157 (244)
.+|.|+|.|-=. ++..+++. +..|+++|+++.. +. .++ ..+.-|..++--..-...|+|.+.
T Consensus 15 gkVvEVGiG~~~~VA~~L~e~-g~dv~atDI~~~~--------a~-~g~----~~v~DDitnP~~~iY~~A~lIYSi--- 77 (129)
T COG1255 15 GKVVEVGIGFFLDVAKRLAER-GFDVLATDINEKT--------AP-EGL----RFVVDDITNPNISIYEGADLIYSI--- 77 (129)
T ss_pred CcEEEEccchHHHHHHHHHHc-CCcEEEEeccccc--------Cc-ccc----eEEEccCCCccHHHhhCccceeec---
Confidence 499999877543 34455544 7899999998751 11 122 222222222211112346777664
Q ss_pred cCCcChHHHHHHHHHHHHhcCCCCceEee
Q 026036 158 LYVKQYSNLIKSLSVLLKSYKPKDSQVGH 186 (244)
Q Consensus 158 ~~~~~~~~l~~~l~~~~~~lk~gG~~~~~ 186 (244)
...+.+...+-.+++.+ |..+++.
T Consensus 78 ---RpppEl~~~ildva~aV--ga~l~I~ 101 (129)
T COG1255 78 ---RPPPELQSAILDVAKAV--GAPLYIK 101 (129)
T ss_pred ---CCCHHHHHHHHHHHHhh--CCCEEEE
Confidence 34566777777777754 3445554
|
|
| >PF05206 TRM13: Methyltransferase TRM13; InterPro: IPR007871 This entry consists of eukaryotic and bacterial proteins that specifically methylates guanosine-4 in various tRNAs with a Gly(CCG), His or Pro signatures [] | Back alignment and domain information |
|---|
Probab=89.18 E-value=1 Score=36.97 Aligned_cols=43 Identities=21% Similarity=0.272 Sum_probs=32.3
Q ss_pred HHhhccCcccCCeEEEeCCCCcHHHHHHHHhC------CCeEEEEeCCh
Q 026036 68 WLMHHREWIERRRCIELGSGTGALAIFLRKAM------NLDITTSDYND 110 (244)
Q Consensus 68 ~~~~~~~~~~~~~VLdlG~G~G~~~~~~a~~~------~~~v~~~D~~~ 110 (244)
.+.+..-+.+...++|+|||.|.++..++... ...++.+|-..
T Consensus 9 ~l~~~~ll~~~~~~vEfGaGrg~LS~~v~~~~~~~~~~~~~~~lIDR~~ 57 (259)
T PF05206_consen 9 NLEQRGLLNPDSCFVEFGAGRGELSRWVAQALQEDKPSNSRFVLIDRAS 57 (259)
T ss_pred HHHHcCCCCCCCEEEEECCCchHHHHHHHHHhhhcccCCccEEEEecCc
Confidence 34443344566799999999999998887765 35799999854
|
The alignment contains some conserved cysteines and histidines that might form a zinc binding site.; GO: 0008168 methyltransferase activity, 0008033 tRNA processing |
| >PF03686 UPF0146: Uncharacterised protein family (UPF0146); InterPro: IPR005353 The function of this family of proteins is unknown | Back alignment and domain information |
|---|
Probab=88.88 E-value=1.2 Score=32.07 Aligned_cols=91 Identities=20% Similarity=0.253 Sum_probs=46.4
Q ss_pred HHHHHHhhccCcccCCeEEEeCCCCc-HHHHHHHHhCCCeEEEEeCChHHHHHHHHHhHHhcCCCCCcceEeeecCCCCC
Q 026036 64 SFAEWLMHHREWIERRRCIELGSGTG-ALAIFLRKAMNLDITTSDYNDQEIEDNIAYNSTTNGITPALPHIKHSWGDAFP 142 (244)
Q Consensus 64 ~l~~~~~~~~~~~~~~~VLdlG~G~G-~~~~~~a~~~~~~v~~~D~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 142 (244)
.+++++.+.. ...+|+|+|-|.= ..+..+.+. +..|++||+.+... . .++ ..+.-|..++-.
T Consensus 3 ~~a~~ia~~~---~~~kiVEVGiG~~~~vA~~L~~~-G~dV~~tDi~~~~a--------~-~g~----~~v~DDif~P~l 65 (127)
T PF03686_consen 3 DFAEYIARLN---NYGKIVEVGIGFNPEVAKKLKER-GFDVIATDINPRKA--------P-EGV----NFVVDDIFNPNL 65 (127)
T ss_dssp HHHHHHHHHS----SSEEEEET-TT--HHHHHHHHH-S-EEEEE-SS-S-------------ST----TEE---SSS--H
T ss_pred hHHHHHHHhC---CCCcEEEECcCCCHHHHHHHHHc-CCcEEEEECccccc--------c-cCc----ceeeecccCCCH
Confidence 5677776543 2349999998855 445566555 69999999998621 1 223 233323323211
Q ss_pred CCCCCccEEEEcccccCCcChHHHHHHHHHHHHhc
Q 026036 143 IPNPDWDLILASDILLYVKQYSNLIKSLSVLLKSY 177 (244)
Q Consensus 143 ~~~~~fD~I~~~~~l~~~~~~~~l~~~l~~~~~~l 177 (244)
..-...|+|.+..+- ++++..+.++++..
T Consensus 66 ~iY~~a~lIYSiRPP------~El~~~il~lA~~v 94 (127)
T PF03686_consen 66 EIYEGADLIYSIRPP------PELQPPILELAKKV 94 (127)
T ss_dssp HHHTTEEEEEEES--------TTSHHHHHHHHHHH
T ss_pred HHhcCCcEEEEeCCC------hHHhHHHHHHHHHh
Confidence 112357888886553 44556666677654
|
; PDB: 2K4M_A. |
| >PRK05786 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional | Back alignment and domain information |
|---|
Probab=88.41 E-value=7.6 Score=30.73 Aligned_cols=105 Identities=8% Similarity=0.006 Sum_probs=54.9
Q ss_pred cCCeEEEeCCCCcHHHHHHHHhC---CCeEEEEeCChHHHHHHHHHhHHhcCCCCCcceEeeecCCCCCC---------C
Q 026036 77 ERRRCIELGSGTGALAIFLRKAM---NLDITTSDYNDQEIEDNIAYNSTTNGITPALPHIKHSWGDAFPI---------P 144 (244)
Q Consensus 77 ~~~~VLdlG~G~G~~~~~~a~~~---~~~v~~~D~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------~ 144 (244)
++++||=.|++ |.++..+++.. +.+|++++-+++.. +.+....... ..+..+..++.+.... .
T Consensus 4 ~~~~vlItGa~-g~iG~~~a~~l~~~G~~V~~~~r~~~~~-~~~~~~~~~~---~~~~~~~~Dl~~~~~~~~~~~~~~~~ 78 (238)
T PRK05786 4 KGKKVAIIGVS-EGLGYAVAYFALKEGAQVCINSRNENKL-KRMKKTLSKY---GNIHYVVGDVSSTESARNVIEKAAKV 78 (238)
T ss_pred CCcEEEEECCC-chHHHHHHHHHHHCCCEEEEEeCCHHHH-HHHHHHHHhc---CCeEEEECCCCCHHHHHHHHHHHHHH
Confidence 56789988875 44454444433 77999999987654 3232222211 1223444454432110 1
Q ss_pred CCCccEEEEcccccCCcChHH--------------HHHHHHHHHHhcCCCCceEee
Q 026036 145 NPDWDLILASDILLYVKQYSN--------------LIKSLSVLLKSYKPKDSQVGH 186 (244)
Q Consensus 145 ~~~fD~I~~~~~l~~~~~~~~--------------l~~~l~~~~~~lk~gG~~~~~ 186 (244)
-+..|.++.+...+......+ ....++.+.+.++++|++++.
T Consensus 79 ~~~id~ii~~ag~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~iv~~ 134 (238)
T PRK05786 79 LNAIDGLVVTVGGYVEDTVEEFSGLEEMLTNHIKIPLYAVNASLRFLKEGSSIVLV 134 (238)
T ss_pred hCCCCEEEEcCCCcCCCchHHHHHHHHHHHHhchHHHHHHHHHHHHHhcCCEEEEE
Confidence 134687777654432111111 123355666677778877766
|
|
| >PF08468 MTS_N: Methyltransferase small domain N-terminal; InterPro: IPR013675 This domain is found to the N terminus of the methyltransferase small domain (IPR007848 from INTERPRO) in bacterial proteins [] | Back alignment and domain information |
|---|
Probab=88.34 E-value=1.1 Score=33.74 Aligned_cols=103 Identities=14% Similarity=0.230 Sum_probs=51.7
Q ss_pred HHHhhccCcccCCeEEEeCCCCcHHHHHHHHhCCCeEEEEeCChHHHHHHHHHhHHhcCCCCCcceEeeecCCCCCCCCC
Q 026036 67 EWLMHHREWIERRRCIELGSGTGALAIFLRKAMNLDITTSDYNDQEIEDNIAYNSTTNGITPALPHIKHSWGDAFPIPNP 146 (244)
Q Consensus 67 ~~~~~~~~~~~~~~VLdlG~G~G~~~~~~a~~~~~~v~~~D~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 146 (244)
+.++++...+.|++||=+|.=.-.+...+... +.+|.+.. ...- ........ .+ +.+..+...+ ...
T Consensus 2 qvllR~~~~f~~k~vL~~g~~~D~~~~~L~~~-~~~v~~~~--~~~~-~~~~~~~~-~~-------~~~~f~~~~~-~~~ 68 (155)
T PF08468_consen 2 QVLLRNSDLFEGKSVLFAGDPQDDLPAQLPAI-AVSVHVFS--YHHW-YALQKQAQ-SN-------VQFHFGAELP-ADQ 68 (155)
T ss_dssp HHHHTTHHHHTT-EEEEEE---SSHHHHS--S-EEEEEESB--HHHH-HHHHHHHG-GG-------EEE-SS--HH-HHT
T ss_pred hhhhhhHHHHCCCeEEEEcCCchhhHHHhhhc-CCEEEEEE--chHH-HHHhHhcc-cC-------ceEeeeccCC-ccc
Confidence 45666777788988999875444444444322 33454444 2211 11111111 11 1222211111 124
Q ss_pred CccEEEEcccccCCcChHHHHHHHHHHHHhcCCCCceEee
Q 026036 147 DWDLILASDILLYVKQYSNLIKSLSVLLKSYKPKDSQVGH 186 (244)
Q Consensus 147 ~fD~I~~~~~l~~~~~~~~l~~~l~~~~~~lk~gG~~~~~ 186 (244)
.||.||. |.+.+.+.+.=.|..+...|++||.++++
T Consensus 69 ~~D~vvl----y~PKaK~e~~~lL~~l~~~L~~g~~i~vV 104 (155)
T PF08468_consen 69 DFDTVVL----YWPKAKAEAQYLLANLLSHLPPGTEIFVV 104 (155)
T ss_dssp T-SEEEE----E--SSHHHHHHHHHHHHTTS-TT-EEEEE
T ss_pred CCCEEEE----EccCcHHHHHHHHHHHHHhCCCCCEEEEE
Confidence 6999987 67777777778889999999999988876
|
; GO: 0008990 rRNA (guanine-N2-)-methyltransferase activity, 0006364 rRNA processing; PDB: 2PJD_A. |
| >PLN02586 probable cinnamyl alcohol dehydrogenase | Back alignment and domain information |
|---|
Probab=88.25 E-value=2.9 Score=35.96 Aligned_cols=95 Identities=17% Similarity=0.174 Sum_probs=52.0
Q ss_pred ccCCeEEEeCCC-CcHHHHHHHHhCCCeEEEEeCChHHHHHHHHHhHHhcCCCCCcceEeeecCCCCCCCCCCccEEEEc
Q 026036 76 IERRRCIELGSG-TGALAIFLRKAMNLDITTSDYNDQEIEDNIAYNSTTNGITPALPHIKHSWGDAFPIPNPDWDLILAS 154 (244)
Q Consensus 76 ~~~~~VLdlG~G-~G~~~~~~a~~~~~~v~~~D~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fD~I~~~ 154 (244)
.+|.+||=.|+| .|..++.+|+..+.+|++++.+++.....+++ .+... .+.....+......+.+|+|+-
T Consensus 182 ~~g~~VlV~G~G~vG~~avq~Ak~~Ga~vi~~~~~~~~~~~~~~~----~Ga~~---vi~~~~~~~~~~~~~~~D~vid- 253 (360)
T PLN02586 182 EPGKHLGVAGLGGLGHVAVKIGKAFGLKVTVISSSSNKEDEAINR----LGADS---FLVSTDPEKMKAAIGTMDYIID- 253 (360)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCcchhhhHHHh----CCCcE---EEcCCCHHHHHhhcCCCCEEEE-
Confidence 467888888874 55566667777788899988876532122221 12210 0000000000001124788874
Q ss_pred ccccCCcChHHHHHHHHHHHHhcCCCCceEee
Q 026036 155 DILLYVKQYSNLIKSLSVLLKSYKPKDSQVGH 186 (244)
Q Consensus 155 ~~l~~~~~~~~l~~~l~~~~~~lk~gG~~~~~ 186 (244)
+. . .. .+++...+.+++||+++..
T Consensus 254 -~~---g-~~---~~~~~~~~~l~~~G~iv~v 277 (360)
T PLN02586 254 -TV---S-AV---HALGPLLGLLKVNGKLITL 277 (360)
T ss_pred -CC---C-CH---HHHHHHHHHhcCCcEEEEe
Confidence 32 1 12 3566678899999998765
|
|
| >PRK11524 putative methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=88.21 E-value=0.75 Score=38.26 Aligned_cols=43 Identities=19% Similarity=0.095 Sum_probs=30.3
Q ss_pred CCCCccEEEEcccccCCcC-------------hHHHHHHHHHHHHhcCCCCceEee
Q 026036 144 PNPDWDLILASDILLYVKQ-------------YSNLIKSLSVLLKSYKPKDSQVGH 186 (244)
Q Consensus 144 ~~~~fD~I~~~~~l~~~~~-------------~~~l~~~l~~~~~~lk~gG~~~~~ 186 (244)
.+++||+|++..+++.... ..-+.+.+.++.++|||||.+++.
T Consensus 24 ~~~siDlIitDPPY~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~rvLK~~G~i~i~ 79 (284)
T PRK11524 24 PSESVDLIFADPPYNIGKNFDGLIEAWKEDLFIDWLYEWIDECHRVLKKQGTMYIM 79 (284)
T ss_pred ccCcccEEEECCCcccccccccccccccHHHHHHHHHHHHHHHHHHhCCCcEEEEE
Confidence 3568999999777532100 012347889999999999999876
|
|
| >cd08245 CAD Cinnamyl alcohol dehydrogenases (CAD) and related proteins | Back alignment and domain information |
|---|
Probab=87.97 E-value=7.7 Score=32.49 Aligned_cols=97 Identities=15% Similarity=0.077 Sum_probs=56.0
Q ss_pred cCcccCCeEEEeCCC-CcHHHHHHHHhCCCeEEEEeCChHHHHHHHHHhHHhcCCCCCcceEeeecCCCCCCCCCCccEE
Q 026036 73 REWIERRRCIELGSG-TGALAIFLRKAMNLDITTSDYNDQEIEDNIAYNSTTNGITPALPHIKHSWGDAFPIPNPDWDLI 151 (244)
Q Consensus 73 ~~~~~~~~VLdlG~G-~G~~~~~~a~~~~~~v~~~D~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fD~I 151 (244)
....++.+||-+|+| .|.....+++..+.+|++++.+++.. +.++. . +... .+.....+......+.+|++
T Consensus 158 ~~~~~~~~vlI~g~g~iG~~~~~~a~~~G~~v~~~~~~~~~~-~~~~~-~---g~~~---~~~~~~~~~~~~~~~~~d~v 229 (330)
T cd08245 158 AGPRPGERVAVLGIGGLGHLAVQYARAMGFETVAITRSPDKR-ELARK-L---GADE---VVDSGAELDEQAAAGGADVI 229 (330)
T ss_pred hCCCCCCEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCHHHH-HHHHH-h---CCcE---EeccCCcchHHhccCCCCEE
Confidence 345577889999886 66666666777788999999888765 44432 1 1100 00000000000012358988
Q ss_pred EEcccccCCcChHHHHHHHHHHHHhcCCCCceEee
Q 026036 152 LASDILLYVKQYSNLIKSLSVLLKSYKPKDSQVGH 186 (244)
Q Consensus 152 ~~~~~l~~~~~~~~l~~~l~~~~~~lk~gG~~~~~ 186 (244)
+. ++ . .. ..+..+.+.++++|+++..
T Consensus 230 i~--~~---~-~~---~~~~~~~~~l~~~G~~i~~ 255 (330)
T cd08245 230 LV--TV---V-SG---AAAEAALGGLRRGGRIVLV 255 (330)
T ss_pred EE--CC---C-cH---HHHHHHHHhcccCCEEEEE
Confidence 75 22 1 12 3556678899999988765
|
Cinnamyl alcohol dehydrogenases (CAD), members of the medium chain dehydrogenase/reductase family, reduce cinnamaldehydes to cinnamyl alcohols in the last step of monolignal metabolism in plant cells walls. CAD binds 2 zinc ions and is NADPH- dependent. CAD family members are also found in non-plant species, e.g. in yeast where they have an aldehyde reductase activity. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an |
| >cd08255 2-desacetyl-2-hydroxyethyl_bacteriochlorophyllide_like 2-desacetyl-2-hydroxyethyl bacteriochlorophyllide and other MDR family members | Back alignment and domain information |
|---|
Probab=87.79 E-value=10 Score=30.79 Aligned_cols=95 Identities=18% Similarity=0.113 Sum_probs=54.5
Q ss_pred cCcccCCeEEEeCCCC-cHHHHHHHHhCCCe-EEEEeCChHHHHHHHHHhHHhcCCCCCcceEeeecCCCCCCCCCCccE
Q 026036 73 REWIERRRCIELGSGT-GALAIFLRKAMNLD-ITTSDYNDQEIEDNIAYNSTTNGITPALPHIKHSWGDAFPIPNPDWDL 150 (244)
Q Consensus 73 ~~~~~~~~VLdlG~G~-G~~~~~~a~~~~~~-v~~~D~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fD~ 150 (244)
....++.+||=.|+|. |..++.+|+..+.+ |++++.+++.. +.+++. +....+ ....+. ......+|+
T Consensus 93 ~~~~~g~~vlI~g~g~vg~~~i~~a~~~g~~~vi~~~~~~~~~-~~~~~~----g~~~~~----~~~~~~-~~~~~~~d~ 162 (277)
T cd08255 93 AEPRLGERVAVVGLGLVGLLAAQLAKAAGAREVVGVDPDAARR-ELAEAL----GPADPV----AADTAD-EIGGRGADV 162 (277)
T ss_pred cCCCCCCEEEEECCCHHHHHHHHHHHHcCCCcEEEECCCHHHH-HHHHHc----CCCccc----cccchh-hhcCCCCCE
Confidence 4456788999888753 55556666766777 99999888764 443322 110000 000000 012235898
Q ss_pred EEEcccccCCcChHHHHHHHHHHHHhcCCCCceEee
Q 026036 151 ILASDILLYVKQYSNLIKSLSVLLKSYKPKDSQVGH 186 (244)
Q Consensus 151 I~~~~~l~~~~~~~~l~~~l~~~~~~lk~gG~~~~~ 186 (244)
|+..-. .. ..+....+.++++|+++..
T Consensus 163 vl~~~~------~~---~~~~~~~~~l~~~g~~~~~ 189 (277)
T cd08255 163 VIEASG------SP---SALETALRLLRDRGRVVLV 189 (277)
T ss_pred EEEccC------Ch---HHHHHHHHHhcCCcEEEEE
Confidence 875211 12 3456677889999998765
|
This subgroup of the medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family has members identified as 2-desacetyl-2-hydroxyethyl bacteriochlorophyllide A dehydrogenase and alcohol dehydrogenases. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MD |
| >TIGR00027 mthyl_TIGR00027 methyltransferase, putative, TIGR00027 family | Back alignment and domain information |
|---|
Probab=87.69 E-value=9.9 Score=31.21 Aligned_cols=151 Identities=13% Similarity=0.009 Sum_probs=77.8
Q ss_pred CeEEEeCCCCcHHHHHHHHhCCCeEEEEeCChHHHHHHHHHhHHhcCC--CCCcceEeee----cCCCCC---CCCCCcc
Q 026036 79 RRCIELGSGTGALAIFLRKAMNLDITTSDYNDQEIEDNIAYNSTTNGI--TPALPHIKHS----WGDAFP---IPNPDWD 149 (244)
Q Consensus 79 ~~VLdlG~G~G~~~~~~a~~~~~~v~~~D~~~~~l~~~~~~~~~~~~~--~~~~~~~~~~----~~~~~~---~~~~~fD 149 (244)
..|+.||||.=.-+.-+....+.+++=+|..+ +.+..++.+...+. ..+...+..+ |.+.+. +.....-
T Consensus 83 ~qvV~LGaGlDTr~~Rl~~~~~~~~~EvD~P~--v~~~K~~~l~~~~~~~~~~~~~v~~Dl~~~w~~~L~~~gfd~~~pt 160 (260)
T TIGR00027 83 RQVVILGAGLDTRAYRLPWPDGTRVFEVDQPA--VLAFKEKVLAELGAEPPAHRRAVPVDLRQDWPAALAAAGFDPTAPT 160 (260)
T ss_pred cEEEEeCCccccHHHhcCCCCCCeEEECCChH--HHHHHHHHHHHcCCCCCCceEEeccCchhhHHHHHHhCCCCCCCCe
Confidence 47999999977666554322134455555543 32444444443322 1222333333 222111 2123455
Q ss_pred EEEEcccccCCcChHHHHHHHHHHHHhcCCCCceEeecccccCCC------CCCCCCCCeEEEeeeeccCccchhhHHHH
Q 026036 150 LILASDILLYVKQYSNLIKSLSVLLKSYKPKDSQVGHLTKNEQGE------GTEGLPWPAFLMSWRRRIGKEDETIFFTS 223 (244)
Q Consensus 150 ~I~~~~~l~~~~~~~~l~~~l~~~~~~lk~gG~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 223 (244)
++++-.++++ ...+...++++.+.+...||+.+++......... ......-........... .+..+..+.
T Consensus 161 l~i~EGvl~Y-L~~~~v~~ll~~i~~~~~~gs~l~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~ 237 (260)
T TIGR00027 161 AWLWEGLLMY-LTEEAVDALLAFIAELSAPGSRLAFDYVRPLDGEWRAGMRAPVYHAARGVDGSGLVFG--IDRADVAEW 237 (260)
T ss_pred eeeecchhhc-CCHHHHHHHHHHHHHhCCCCcEEEEEeccccchhHHHHHHHHHHHhhhcccccccccC--CChhhHHHH
Confidence 7777777754 4556777899999888888888777633221100 000000000000111111 224788899
Q ss_pred HhhcCCeEEEe
Q 026036 224 CENAGLEVKHL 234 (244)
Q Consensus 224 l~~~Gf~v~~~ 234 (244)
++.+||++...
T Consensus 238 l~~~Gw~~~~~ 248 (260)
T TIGR00027 238 LAERGWRASEH 248 (260)
T ss_pred HHHCCCeeecC
Confidence 99999998765
|
This model represents a set of probable methyltransferases, about 300 amino acids long, with essentially full length homology. Members share an N-terminal region described by Pfam model pfam02409. Included are a paralogous family of 12 proteins in Mycobacterium tuberculosis, plus close homologs in related species, a family of 8 in the archaeon Methanosarcina acetivorans, and small numbers of members in other species, including plants. |
| >PF05430 Methyltransf_30: S-adenosyl-L-methionine-dependent methyltransferase; InterPro: IPR008471 This entry contains several uncharacterised bacterial proteins with no known function | Back alignment and domain information |
|---|
Probab=87.56 E-value=0.75 Score=33.23 Aligned_cols=60 Identities=17% Similarity=0.167 Sum_probs=38.9
Q ss_pred CCccEEEEcccccCCcChHHH--HHHHHHHHHhcCCCCceEeecccccCCCCCCCCCCCeEEEeeeeccCccchhhHHHH
Q 026036 146 PDWDLILASDILLYVKQYSNL--IKSLSVLLKSYKPKDSQVGHLTKNEQGEGTEGLPWPAFLMSWRRRIGKEDETIFFTS 223 (244)
Q Consensus 146 ~~fD~I~~~~~l~~~~~~~~l--~~~l~~~~~~lk~gG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 223 (244)
..||+|+. |.+ .....+++ ...++.++++++|||.+.-- .. ...+...
T Consensus 49 ~~~Da~yl-DgF-sP~~nPelWs~e~~~~l~~~~~~~~~l~Ty--------------------------s~--a~~Vr~~ 98 (124)
T PF05430_consen 49 ARFDAWYL-DGF-SPAKNPELWSEELFKKLARLSKPGGTLATY--------------------------SS--AGAVRRA 98 (124)
T ss_dssp T-EEEEEE--SS--TTTSGGGSSHHHHHHHHHHEEEEEEEEES------------------------------BHHHHHH
T ss_pred ccCCEEEe-cCC-CCcCCcccCCHHHHHHHHHHhCCCcEEEEe--------------------------ec--hHHHHHH
Confidence 56888876 443 33333322 28899999999999854421 11 2567788
Q ss_pred HhhcCCeEEEec
Q 026036 224 CENAGLEVKHLG 235 (244)
Q Consensus 224 l~~~Gf~v~~~~ 235 (244)
|.++||+|++..
T Consensus 99 L~~aGF~v~~~~ 110 (124)
T PF05430_consen 99 LQQAGFEVEKVP 110 (124)
T ss_dssp HHHCTEEEEEEE
T ss_pred HHHcCCEEEEcC
Confidence 999999998774
|
; GO: 0016645 oxidoreductase activity, acting on the CH-NH group of donors, 0055114 oxidation-reduction process; PDB: 2E58_D 3SGL_A 3PVC_A 3AWI_D 3PS9_A 2QY6_A. |
| >TIGR02825 B4_12hDH leukotriene B4 12-hydroxydehydrogenase/15-oxo-prostaglandin 13-reductase | Back alignment and domain information |
|---|
Probab=87.56 E-value=3.6 Score=34.53 Aligned_cols=99 Identities=8% Similarity=0.025 Sum_probs=57.1
Q ss_pred cCcccCCeEEEeCC--CCcHHHHHHHHhCCCeEEEEeCChHHHHHHHHHhHHhcCCCCCcceEee-ecCCCC-CCCCCCc
Q 026036 73 REWIERRRCIELGS--GTGALAIFLRKAMNLDITTSDYNDQEIEDNIAYNSTTNGITPALPHIKH-SWGDAF-PIPNPDW 148 (244)
Q Consensus 73 ~~~~~~~~VLdlG~--G~G~~~~~~a~~~~~~v~~~D~~~~~l~~~~~~~~~~~~~~~~~~~~~~-~~~~~~-~~~~~~f 148 (244)
....+|.+||=.|+ |.|..++.+++..+.+|++++.+++.. +.++. .+....+..... .+.+.. ....+.+
T Consensus 134 ~~~~~g~~VLI~ga~g~vG~~aiqlAk~~G~~Vi~~~~s~~~~-~~~~~----lGa~~vi~~~~~~~~~~~~~~~~~~gv 208 (325)
T TIGR02825 134 CGVKGGETVMVNAAAGAVGSVVGQIAKLKGCKVVGAAGSDEKV-AYLKK----LGFDVAFNYKTVKSLEETLKKASPDGY 208 (325)
T ss_pred hCCCCCCEEEEeCCccHHHHHHHHHHHHcCCEEEEEeCCHHHH-HHHHH----cCCCEEEeccccccHHHHHHHhCCCCe
Confidence 44567889998884 467777778887788999999887654 44432 122100000000 000000 0112358
Q ss_pred cEEEEcccccCCcChHHHHHHHHHHHHhcCCCCceEee
Q 026036 149 DLILASDILLYVKQYSNLIKSLSVLLKSYKPKDSQVGH 186 (244)
Q Consensus 149 D~I~~~~~l~~~~~~~~l~~~l~~~~~~lk~gG~~~~~ 186 (244)
|+|+- ++ . . ..+....+.++++|+++..
T Consensus 209 dvv~d--~~---G--~---~~~~~~~~~l~~~G~iv~~ 236 (325)
T TIGR02825 209 DCYFD--NV---G--G---EFSNTVIGQMKKFGRIAIC 236 (325)
T ss_pred EEEEE--CC---C--H---HHHHHHHHHhCcCcEEEEe
Confidence 88874 33 1 1 3346678899999998865
|
Leukotriene B4 12-hydroxydehydrogenase is an NADP-dependent enzyme of arachidonic acid metabolism, responsible for converting leukotriene B4 to the much less active metabolite 12-oxo-leukotriene B4. The BRENDA database lists leukotriene B4 12-hydroxydehydrogenase as one of the synonyms of 2-alkenal reductase (EC 1.3.1.74), while 1.3.1.48 is 15-oxoprostaglandin 13-reductase. |
| >cd01842 SGNH_hydrolase_like_5 SGNH_hydrolase subfamily | Back alignment and domain information |
|---|
Probab=87.52 E-value=2.4 Score=32.56 Aligned_cols=46 Identities=17% Similarity=0.075 Sum_probs=33.9
Q ss_pred CCCccEEEEcccccCCcC---------hHHHHHHHHHHHHhcCCCCceEeecccc
Q 026036 145 NPDWDLILASDILLYVKQ---------YSNLIKSLSVLLKSYKPKDSQVGHLTKN 190 (244)
Q Consensus 145 ~~~fD~I~~~~~l~~~~~---------~~~l~~~l~~~~~~lk~gG~~~~~~~~~ 190 (244)
.+++|+|+.|.++|.... ..++.+.+..+..+|+++..++..+..+
T Consensus 48 gg~~DVIi~Ns~LWDl~ry~~~~~~~Y~~NL~~Lf~rLk~~lp~~allIW~tt~P 102 (183)
T cd01842 48 GGRLDLVIMNSCLWDLSRYQRNSMKTYRENLERLFSKLDSVLPIECLIVWNTAMP 102 (183)
T ss_pred CCceeEEEEecceecccccCCCCHHHHHHHHHHHHHHHHhhCCCccEEEEecCCC
Confidence 467899999999974432 3467778888888888888777774444
|
SGNH hydrolases are a diverse family of lipases and esterases. The tertiary fold of the enzyme is substantially different from that of the alpha/beta hydrolase family and unique among all known hydrolases; its active site closely resembles the Ser-His-Asp(Glu) triad found in other serine hydrolases. |
| >cd08294 leukotriene_B4_DH_like 13-PGR is a bifunctional enzyme with delta-13 15-prostaglandin reductase and leukotriene B4 12 hydroxydehydrogenase activity | Back alignment and domain information |
|---|
Probab=87.44 E-value=3.2 Score=34.73 Aligned_cols=99 Identities=11% Similarity=0.033 Sum_probs=56.9
Q ss_pred cCcccCCeEEEeCC--CCcHHHHHHHHhCCCeEEEEeCChHHHHHHHHHhHHhcCCCCCcceEeeecCCCC-CCCCCCcc
Q 026036 73 REWIERRRCIELGS--GTGALAIFLRKAMNLDITTSDYNDQEIEDNIAYNSTTNGITPALPHIKHSWGDAF-PIPNPDWD 149 (244)
Q Consensus 73 ~~~~~~~~VLdlG~--G~G~~~~~~a~~~~~~v~~~D~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~fD 149 (244)
....+|.+||=.|+ |.|..++.+|+..+.+|++++.+++.. +.++. .+....+.....++.+.. ......+|
T Consensus 139 ~~~~~g~~vlI~ga~g~vG~~aiqlA~~~G~~vi~~~~s~~~~-~~l~~----~Ga~~vi~~~~~~~~~~v~~~~~~gvd 213 (329)
T cd08294 139 CKPKAGETVVVNGAAGAVGSLVGQIAKIKGCKVIGCAGSDDKV-AWLKE----LGFDAVFNYKTVSLEEALKEAAPDGID 213 (329)
T ss_pred cCCCCCCEEEEecCccHHHHHHHHHHHHcCCEEEEEeCCHHHH-HHHHH----cCCCEEEeCCCccHHHHHHHHCCCCcE
Confidence 44567889988874 466667777777788999999887654 44433 122100000000110000 01124588
Q ss_pred EEEEcccccCCcChHHHHHHHHHHHHhcCCCCceEee
Q 026036 150 LILASDILLYVKQYSNLIKSLSVLLKSYKPKDSQVGH 186 (244)
Q Consensus 150 ~I~~~~~l~~~~~~~~l~~~l~~~~~~lk~gG~~~~~ 186 (244)
+|+- ++ . . ..+....+.++++|+++..
T Consensus 214 ~vld--~~---g--~---~~~~~~~~~l~~~G~iv~~ 240 (329)
T cd08294 214 CYFD--NV---G--G---EFSSTVLSHMNDFGRVAVC 240 (329)
T ss_pred EEEE--CC---C--H---HHHHHHHHhhccCCEEEEE
Confidence 8874 33 1 1 4456778889999998754
|
Prostaglandins and related eicosanoids are metabolized by the oxidation of the 15(S)-hydroxyl group of the NAD+-dependent (type I 15-PGDH) 15-prostaglandin dehydrogenase (15-PGDH) followed by reduction by NADPH/NADH-dependent (type II 15-PGDH) delta-13 15-prostaglandin reductase (13-PGR) to 15-keto- 13,14,-dihydroprostaglandins. 13-PGR is a bifunctional enzyme, since it also has leukotriene B(4) 12-hydroxydehydrogenase activity. These 15-PGDH and related enzymes are members of the medium chain dehydrogenase/reductase family. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of ac |
| >PF01795 Methyltransf_5: MraW methylase family; InterPro: IPR002903 This is a family of S-adenosyl-L-methionine-dependent methyltransferases, which are found primarily, though not exclusively, in bacteria | Back alignment and domain information |
|---|
Probab=87.38 E-value=0.94 Score=38.08 Aligned_cols=51 Identities=8% Similarity=0.036 Sum_probs=34.9
Q ss_pred hhccCcccCCeEEEeCCCCcHHHHHHHHhC-CCeEEEEeCChHHHHHHHHHhH
Q 026036 70 MHHREWIERRRCIELGSGTGALAIFLRKAM-NLDITTSDYNDQEIEDNIAYNS 121 (244)
Q Consensus 70 ~~~~~~~~~~~VLdlG~G~G~~~~~~a~~~-~~~v~~~D~~~~~l~~~~~~~~ 121 (244)
.+.....++..++|---|.|..+..+.+.. ..+++|+|.+++++ +.+++++
T Consensus 13 l~~L~~~~~g~~vD~T~G~GGHS~aiL~~~~~~~li~~DrD~~a~-~~a~~~l 64 (310)
T PF01795_consen 13 LEALNPKPGGIYVDCTFGGGGHSKAILEKLPNGRLIGIDRDPEAL-ERAKERL 64 (310)
T ss_dssp HHHHT--TT-EEEETT-TTSHHHHHHHHT-TT-EEEEEES-HHHH-HHHHCCT
T ss_pred HHhhCcCCCceEEeecCCcHHHHHHHHHhCCCCeEEEecCCHHHH-HHHHHHH
Confidence 333445677899999999999999988765 68999999999987 6665443
|
The Escherichia coli protein is essential and has been linked to peptidoglycan biosynthesis [, ].; GO: 0008168 methyltransferase activity; PDB: 1N2X_A 1M6Y_A 1WG8_A 3TKA_A. |
| >PRK09489 rsmC 16S ribosomal RNA m2G1207 methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=87.00 E-value=5.6 Score=34.09 Aligned_cols=106 Identities=17% Similarity=0.136 Sum_probs=59.6
Q ss_pred chHHHHHHHHhhccCcccCCeEEEeCCCCcHHHHHHHHhCCCeEEEEeCChHHHHHHHHHhHHhcCCCCCcceEeeecCC
Q 026036 60 PGTFSFAEWLMHHREWIERRRCIELGSGTGALAIFLRKAMNLDITTSDYNDQEIEDNIAYNSTTNGITPALPHIKHSWGD 139 (244)
Q Consensus 60 ~~~~~l~~~~~~~~~~~~~~~VLdlG~G~G~~~~~~a~~~~~~v~~~D~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 139 (244)
+.++.+.+. ...+.+++||=+|--...+...+. ....+|...+.+... ..+.+ .+. ...+.. +
T Consensus 6 ~~s~~~~r~----~~~~~~~~~l~~~~~~d~~~~~l~-~~~~~~~~~~~~~~~---~~~~~---~~~-----~~~f~~-~ 68 (342)
T PRK09489 6 PASEVLLRH----SDDFEQRRVLFAGDLQDDLPAQLD-AASVRVHTQQFHHWQ---VLSRQ---MGD-----NARFSL-V 68 (342)
T ss_pred hHHHHHHhh----HHHhCCCcEEEEcCcchhhHHhhh-ccceEEehhhhHHHH---HHHhh---cCC-----ceEecc-c
Confidence 345555444 344677889988876666555453 223345544443321 11111 111 111211 1
Q ss_pred CCCCCCCCccEEEEcccccCCcChHHHHHHHHHHHHhcCCCCceEee
Q 026036 140 AFPIPNPDWDLILASDILLYVKQYSNLIKSLSVLLKSYKPKDSQVGH 186 (244)
Q Consensus 140 ~~~~~~~~fD~I~~~~~l~~~~~~~~l~~~l~~~~~~lk~gG~~~~~ 186 (244)
........||+|+. |.+.....+.-.|..+.+.|+|||.+++.
T Consensus 69 ~~~~~~~~~d~~~~----~~pk~k~~~~~~l~~~~~~l~~g~~i~~~ 111 (342)
T PRK09489 69 ATAEDVADCDTLIY----YWPKNKQEAQFQLMNLLSLLPVGTDIFVV 111 (342)
T ss_pred cCCccCCCCCEEEE----ECCCCHHHHHHHHHHHHHhCCCCCEEEEE
Confidence 11112247999887 56667777778889999999999998887
|
|
| >cd08295 double_bond_reductase_like Arabidopsis alkenal double bond reductase and leukotriene B4 12-hydroxydehydrogenase | Back alignment and domain information |
|---|
Probab=86.92 E-value=6.1 Score=33.40 Aligned_cols=100 Identities=14% Similarity=0.079 Sum_probs=57.2
Q ss_pred cCcccCCeEEEeCC--CCcHHHHHHHHhCCCeEEEEeCChHHHHHHHHHhHHhcCCCCCcceEe-eecCCCC-CCCCCCc
Q 026036 73 REWIERRRCIELGS--GTGALAIFLRKAMNLDITTSDYNDQEIEDNIAYNSTTNGITPALPHIK-HSWGDAF-PIPNPDW 148 (244)
Q Consensus 73 ~~~~~~~~VLdlG~--G~G~~~~~~a~~~~~~v~~~D~~~~~l~~~~~~~~~~~~~~~~~~~~~-~~~~~~~-~~~~~~f 148 (244)
....+|.+||=.|+ |.|..++.+|+..+.+|++++.+++.. +.++... +....+..-. -++.+.. ......+
T Consensus 147 ~~~~~g~~VlI~Ga~G~vG~~aiqlAk~~G~~Vi~~~~~~~~~-~~~~~~l---Ga~~vi~~~~~~~~~~~i~~~~~~gv 222 (338)
T cd08295 147 CKPKKGETVFVSAASGAVGQLVGQLAKLKGCYVVGSAGSDEKV-DLLKNKL---GFDDAFNYKEEPDLDAALKRYFPNGI 222 (338)
T ss_pred cCCCCCCEEEEecCccHHHHHHHHHHHHcCCEEEEEeCCHHHH-HHHHHhc---CCceeEEcCCcccHHHHHHHhCCCCc
Confidence 45568889998886 466666777777788999998887654 4443311 2210000000 0000000 0112368
Q ss_pred cEEEEcccccCCcChHHHHHHHHHHHHhcCCCCceEee
Q 026036 149 DLILASDILLYVKQYSNLIKSLSVLLKSYKPKDSQVGH 186 (244)
Q Consensus 149 D~I~~~~~l~~~~~~~~l~~~l~~~~~~lk~gG~~~~~ 186 (244)
|+|+- ++ . . ..+....+.++++|+++..
T Consensus 223 d~v~d--~~---g--~---~~~~~~~~~l~~~G~iv~~ 250 (338)
T cd08295 223 DIYFD--NV---G--G---KMLDAVLLNMNLHGRIAAC 250 (338)
T ss_pred EEEEE--CC---C--H---HHHHHHHHHhccCcEEEEe
Confidence 88874 33 1 1 4566778999999998754
|
This group includes proteins identified as the Arabidopsis alkenal double bond reductase and leukotriene B4 12-hydroxydehydrogenase. The Arabidopsis enzyme, a member of the medium chain dehydrogenase/reductase family, catalyzes the reduction of 7-8-double bond of phenylpropanal substrates as a plant defense mechanism. Prostaglandins and related eicosanoids (lipid mediators involved in host defense and inflamation) are metabolized by the oxidation of the 15(S)-hydroxyl group of the NAD+-dependent (type I 15-PGDH) 15-prostaglandin dehydrogenase (15-PGDH) followed by reduction by NADPH/NADH-dependent (type II 15-PGDH) delta-13 15-prostaglandin reductase (13-PGR) to 15-keto-13,14,-dihydroprostaglandins. 13-PGR is a bifunctional enzyme, since it also has leukotriene B(4) 12-hydroxydehydrogenase activity. Leukotriene B4 (LTB4) can be metabolized by LTB4 20-hydroxylase in |
| >PF07279 DUF1442: Protein of unknown function (DUF1442); InterPro: IPR009902 This family consists of several hypothetical Arabidopsis thaliana proteins of around 225 residues in length | Back alignment and domain information |
|---|
Probab=86.85 E-value=12 Score=29.72 Aligned_cols=108 Identities=16% Similarity=0.183 Sum_probs=54.9
Q ss_pred HHHHhhccCcccCCeEEEeCCCCc----HHHHHHHHh-CCCeEEEEeCChHHHHHHHHHhHHhcCCCCCcceEeeecCCC
Q 026036 66 AEWLMHHREWIERRRCIELGSGTG----ALAIFLRKA-MNLDITTSDYNDQEIEDNIAYNSTTNGITPALPHIKHSWGDA 140 (244)
Q Consensus 66 ~~~~~~~~~~~~~~~VLdlG~G~G----~~~~~~a~~-~~~~v~~~D~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 140 (244)
++||.....-..-+.++|..|+-| .++++.|.+ -+.+++.+-.++..+ ...++.+...+....++++ .++.
T Consensus 30 aEfISAlAAG~nAkliVe~~s~g~~~~ttiaLaaAAr~TgGR~vCIvp~~~~~-~~~~~~l~~~~~~~~vEfv---vg~~ 105 (218)
T PF07279_consen 30 AEFISALAAGWNAKLIVEAWSSGGAISTTIALAAAARQTGGRHVCIVPDEQSL-SEYKKALGEAGLSDVVEFV---VGEA 105 (218)
T ss_pred HHHHHHHhccccceEEEEEecCCCchHhHHHHHHHHHhcCCeEEEEcCChhhH-HHHHHHHhhccccccceEE---ecCC
Confidence 455554444445568999976543 334444333 377788887777654 4455555544543333333 2332
Q ss_pred ----CCCCCCCccEEEEcccccCCcChHHHH-HHHHHHHHhcCCCCceEee
Q 026036 141 ----FPIPNPDWDLILASDILLYVKQYSNLI-KSLSVLLKSYKPKDSQVGH 186 (244)
Q Consensus 141 ----~~~~~~~fD~I~~~~~l~~~~~~~~l~-~~l~~~~~~lk~gG~~~~~ 186 (244)
++. -...|+++. |+= ..+.. +.|+. .+ +.|.|.+++.
T Consensus 106 ~e~~~~~-~~~iDF~vV-Dc~-----~~d~~~~vl~~-~~-~~~~GaVVV~ 147 (218)
T PF07279_consen 106 PEEVMPG-LKGIDFVVV-DCK-----REDFAARVLRA-AK-LSPRGAVVVC 147 (218)
T ss_pred HHHHHhh-ccCCCEEEE-eCC-----chhHHHHHHHH-hc-cCCCceEEEE
Confidence 111 235787775 332 23333 44443 33 3456665555
|
The function of this family is unknown. |
| >KOG3924 consensus Putative protein methyltransferase involved in meiosis and transcriptional silencing (Dot1) [Cell cycle control, cell division, chromosome partitioning; Transcription] | Back alignment and domain information |
|---|
Probab=86.70 E-value=4.6 Score=35.00 Aligned_cols=108 Identities=16% Similarity=0.122 Sum_probs=62.7
Q ss_pred cCcccCCeEEEeCCCCcHHHHHHHHhC-CCeEEEEeCChHH--H-HHHHHHh---HHhcCCCCCcceEeeecCCCCC---
Q 026036 73 REWIERRRCIELGSGTGALAIFLRKAM-NLDITTSDYNDQE--I-EDNIAYN---STTNGITPALPHIKHSWGDAFP--- 142 (244)
Q Consensus 73 ~~~~~~~~VLdlG~G~G~~~~~~a~~~-~~~v~~~D~~~~~--l-~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~--- 142 (244)
....++..-.|+|+|.|.+....|... ...-+|+++.... + ......+ ....+. +...+....++..+
T Consensus 188 l~~g~~D~F~DLGSGVGqlv~~~aa~a~~k~svG~eim~~pS~~a~~~~~~~kk~~k~fGk--~~~~~~~i~gsf~~~~~ 265 (419)
T KOG3924|consen 188 LKLGPADVFMDLGSGVGQLVCFVAAYAGCKKSVGFEIMDKPSQCAELNKEEFKKLMKHFGK--KPNKIETIHGSFLDPKR 265 (419)
T ss_pred hccCCCCcccCCCcccchhhHHHHHhhccccccceeeecCcHHHHHHHHHHHHHHHHHhCC--CcCceeecccccCCHHH
Confidence 455688899999999998877666554 4457777775431 1 1111111 112222 11222222222221
Q ss_pred --CCCCCccEEEEcccccCCcChHHHHHHHHHHHHhcCCCCceEee
Q 026036 143 --IPNPDWDLILASDILLYVKQYSNLIKSLSVLLKSYKPKDSQVGH 186 (244)
Q Consensus 143 --~~~~~fD~I~~~~~l~~~~~~~~l~~~l~~~~~~lk~gG~~~~~ 186 (244)
......++|+++++.|. +++..-+.++..-+++|-+++-.
T Consensus 266 v~eI~~eatvi~vNN~~Fd----p~L~lr~~eil~~ck~gtrIiS~ 307 (419)
T KOG3924|consen 266 VTEIQTEATVIFVNNVAFD----PELKLRSKEILQKCKDGTRIISS 307 (419)
T ss_pred HHHHhhcceEEEEecccCC----HHHHHhhHHHHhhCCCcceEecc
Confidence 11345789999999844 34555566889999998886655
|
|
| >cd08293 PTGR2 Prostaglandin reductase | Back alignment and domain information |
|---|
Probab=85.51 E-value=2.4 Score=35.86 Aligned_cols=94 Identities=9% Similarity=0.103 Sum_probs=52.5
Q ss_pred CeEEEeCC--CCcHHHHHHHHhCCC-eEEEEeCChHHHHHHHHHhHHhcCCCCCcceEeeecCCCC-CCCCCCccEEEEc
Q 026036 79 RRCIELGS--GTGALAIFLRKAMNL-DITTSDYNDQEIEDNIAYNSTTNGITPALPHIKHSWGDAF-PIPNPDWDLILAS 154 (244)
Q Consensus 79 ~~VLdlG~--G~G~~~~~~a~~~~~-~v~~~D~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~fD~I~~~ 154 (244)
.+||=.|+ |.|..++.+|+..+. +|++++.+++.. +.++... +....+.....++.+.+ ......+|+|+-
T Consensus 156 ~~VlI~ga~g~vG~~aiqlAk~~G~~~Vi~~~~s~~~~-~~~~~~l---Ga~~vi~~~~~~~~~~i~~~~~~gvd~vid- 230 (345)
T cd08293 156 QTMVVSGAAGACGSLAGQIGRLLGCSRVVGICGSDEKC-QLLKSEL---GFDAAINYKTDNVAERLRELCPEGVDVYFD- 230 (345)
T ss_pred CEEEEECCCcHHHHHHHHHHHHcCCCEEEEEcCCHHHH-HHHHHhc---CCcEEEECCCCCHHHHHHHHCCCCceEEEE-
Confidence 78988886 466777777777787 799999887654 4443321 22100000000000000 011246898874
Q ss_pred ccccCCcChHHHHHHHHHHHHhcCCCCceEee
Q 026036 155 DILLYVKQYSNLIKSLSVLLKSYKPKDSQVGH 186 (244)
Q Consensus 155 ~~l~~~~~~~~l~~~l~~~~~~lk~gG~~~~~ 186 (244)
++ . . ..+....+.|+++|+++..
T Consensus 231 -~~---g--~---~~~~~~~~~l~~~G~iv~~ 253 (345)
T cd08293 231 -NV---G--G---EISDTVISQMNENSHIILC 253 (345)
T ss_pred -CC---C--c---HHHHHHHHHhccCCEEEEE
Confidence 33 1 1 2245677889999998764
|
Prostaglandins and related eicosanoids are metabolized by the oxidation of the 15(S)-hydroxyl group of the NAD+-dependent (type I 15-PGDH) 15-prostaglandin dehydrogenase (15-PGDH) followed by reduction by NADPH/NADH-dependent (type II 15-PGDH) delta-13 15-prostaglandin reductase (13-PGR) to 15-keto-13,14,-dihydroprostaglandins. 13-PGR is a bifunctional enzyme, since it also has leukotriene B(4) 12-hydroxydehydrogenase activity. These 15-PGDH and related enzymes are members of the medium chain dehydrogenase/reductase family. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acid |
| >cd08283 FDH_like_1 Glutathione-dependent formaldehyde dehydrogenase related proteins, child 1 | Back alignment and domain information |
|---|
Probab=85.47 E-value=2.9 Score=36.26 Aligned_cols=106 Identities=11% Similarity=0.046 Sum_probs=61.5
Q ss_pred cCcccCCeEEEeCCCC-cHHHHHHHHhCCC-eEEEEeCChHHHHHHHHHhHHhcCCCCCcceEeee----cCCCC-CC-C
Q 026036 73 REWIERRRCIELGSGT-GALAIFLRKAMNL-DITTSDYNDQEIEDNIAYNSTTNGITPALPHIKHS----WGDAF-PI-P 144 (244)
Q Consensus 73 ~~~~~~~~VLdlG~G~-G~~~~~~a~~~~~-~v~~~D~~~~~l~~~~~~~~~~~~~~~~~~~~~~~----~~~~~-~~-~ 144 (244)
....++.+||.+|||. |..+..+++..+. +|+++|.+++.+ +.++... +. ..+... +...+ .. .
T Consensus 180 ~~~~~g~~VlV~g~G~vG~~~~~la~~~g~~~vi~~~~~~~~~-~~~~~~~---~~----~vi~~~~~~~~~~~l~~~~~ 251 (386)
T cd08283 180 AEVKPGDTVAVWGCGPVGLFAARSAKLLGAERVIAIDRVPERL-EMARSHL---GA----ETINFEEVDDVVEALRELTG 251 (386)
T ss_pred ccCCCCCEEEEECCCHHHHHHHHHHHHcCCCEEEEEcCCHHHH-HHHHHcC---Cc----EEEcCCcchHHHHHHHHHcC
Confidence 3455788999999886 7777888887776 599999998765 5554431 11 111110 10000 11 1
Q ss_pred CCCccEEEEccccc------CCc------ChHHHHHHHHHHHHhcCCCCceEee
Q 026036 145 NPDWDLILASDILL------YVK------QYSNLIKSLSVLLKSYKPKDSQVGH 186 (244)
Q Consensus 145 ~~~fD~I~~~~~l~------~~~------~~~~l~~~l~~~~~~lk~gG~~~~~ 186 (244)
...+|+|+-.-.-- +.. ...+-...+.++.+.++++|++++.
T Consensus 252 ~~~~D~vld~vg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~G~iv~~ 305 (386)
T cd08283 252 GRGPDVCIDAVGMEAHGSPLHKAEQALLKLETDRPDALREAIQAVRKGGTVSII 305 (386)
T ss_pred CCCCCEEEECCCCcccccccccccccccccccCchHHHHHHHHHhccCCEEEEE
Confidence 23589887632100 000 0011125678888999999998776
|
Members identified as glutathione-dependent formaldehyde dehydrogenase(FDH), a member of the zinc-dependent/medium chain alcohol dehydrogenase family. FDH converts formaldehyde and NAD(P) to formate and NAD(P)H. The initial step in this process the spontaneous formation of a S-(hydroxymethyl)glutathione adduct from formaldehyde and glutathione, followed by FDH-mediated oxidation (and detoxification) of the adduct to S-formylglutathione. MDH family uses NAD(H) as a cofactor in the interconversion of alcohols and aldehydes, or ketones. Like many zinc-dependent alcohol dehydrogenases (ADH) of the medium chain alcohol dehydrogenase/reductase family (MDR), these FDHs form dimers, with 4 zinc ions per dimer. The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. T |
| >KOG0023 consensus Alcohol dehydrogenase, class V [Secondary metabolites biosynthesis, transport and catabolism] | Back alignment and domain information |
|---|
Probab=84.55 E-value=2.3 Score=35.84 Aligned_cols=38 Identities=21% Similarity=0.239 Sum_probs=32.0
Q ss_pred CcccCCeEEEeCC-CCcHHHHHHHHhCCCeEEEEeCChH
Q 026036 74 EWIERRRCIELGS-GTGALAIFLRKAMNLDITTSDYNDQ 111 (244)
Q Consensus 74 ~~~~~~~VLdlG~-G~G~~~~~~a~~~~~~v~~~D~~~~ 111 (244)
...+|++|-=+|. |-|.+++-+|+.++.+|+++|-+..
T Consensus 178 g~~pG~~vgI~GlGGLGh~aVq~AKAMG~rV~vis~~~~ 216 (360)
T KOG0023|consen 178 GLGPGKWVGIVGLGGLGHMAVQYAKAMGMRVTVISTSSK 216 (360)
T ss_pred CCCCCcEEEEecCcccchHHHHHHHHhCcEEEEEeCCch
Confidence 3458888877775 6999999999999999999999863
|
|
| >cd08234 threonine_DH_like L-threonine dehydrogenase | Back alignment and domain information |
|---|
Probab=84.30 E-value=15 Score=30.66 Aligned_cols=97 Identities=15% Similarity=0.165 Sum_probs=54.9
Q ss_pred cCcccCCeEEEeCCC-CcHHHHHHHHhCCCe-EEEEeCChHHHHHHHHHhHHhcCCCCCcceEeeecCCC---CCCCCCC
Q 026036 73 REWIERRRCIELGSG-TGALAIFLRKAMNLD-ITTSDYNDQEIEDNIAYNSTTNGITPALPHIKHSWGDA---FPIPNPD 147 (244)
Q Consensus 73 ~~~~~~~~VLdlG~G-~G~~~~~~a~~~~~~-v~~~D~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~ 147 (244)
....++.+||-+|+| .|...+.+++..+.+ |++++.+++.. +.+++. +.. ..+.....+. .......
T Consensus 155 ~~~~~g~~vlI~g~g~vg~~~~~la~~~G~~~v~~~~~~~~~~-~~~~~~----g~~---~~~~~~~~~~~~~~~~~~~~ 226 (334)
T cd08234 155 LGIKPGDSVLVFGAGPIGLLLAQLLKLNGASRVTVAEPNEEKL-ELAKKL----GAT---ETVDPSREDPEAQKEDNPYG 226 (334)
T ss_pred cCCCCCCEEEEECCCHHHHHHHHHHHHcCCcEEEEECCCHHHH-HHHHHh----CCe---EEecCCCCCHHHHHHhcCCC
Confidence 445678899999864 355556666666776 89999887754 444321 221 0111000000 0112346
Q ss_pred ccEEEEcccccCCcChHHHHHHHHHHHHhcCCCCceEee
Q 026036 148 WDLILASDILLYVKQYSNLIKSLSVLLKSYKPKDSQVGH 186 (244)
Q Consensus 148 fD~I~~~~~l~~~~~~~~l~~~l~~~~~~lk~gG~~~~~ 186 (244)
+|+++.. . . .. ..+....+.++++|+++..
T Consensus 227 vd~v~~~--~---~-~~---~~~~~~~~~l~~~G~~v~~ 256 (334)
T cd08234 227 FDVVIEA--T---G-VP---KTLEQAIEYARRGGTVLVF 256 (334)
T ss_pred CcEEEEC--C---C-Ch---HHHHHHHHHHhcCCEEEEE
Confidence 8999863 2 1 12 4556677888999988765
|
L-threonine dehydrogenase (TDH) catalyzes the zinc-dependent formation of 2-amino-3-ketobutyrate from L-threonine, via NAD(H)-dependent oxidation. THD is a member of the zinc-requiring, medium chain NAD(H)-dependent alcohol dehydrogenase family (MDR). MDRs have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit. Sorbitol and aldose reductase are NAD(+) binding proteins of the polyol pathway, which interconverts glucose and fructose. |
| >cd08298 CAD2 Cinnamyl alcohol dehydrogenases (CAD) | Back alignment and domain information |
|---|
Probab=84.27 E-value=17 Score=30.33 Aligned_cols=92 Identities=13% Similarity=0.066 Sum_probs=51.9
Q ss_pred cCcccCCeEEEeCCC-CcHHHHHHHHhCCCeEEEEeCChHHHHHHHHHhHHhcCCCCCcceEeeecCCCCCCCCCCccEE
Q 026036 73 REWIERRRCIELGSG-TGALAIFLRKAMNLDITTSDYNDQEIEDNIAYNSTTNGITPALPHIKHSWGDAFPIPNPDWDLI 151 (244)
Q Consensus 73 ~~~~~~~~VLdlG~G-~G~~~~~~a~~~~~~v~~~D~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fD~I 151 (244)
....++.+||=.||| .|.....+++..+.+|+.++.+++.. +.++. .+.. . .+..... ....+|++
T Consensus 163 ~~~~~~~~vlV~g~g~vg~~~~~la~~~g~~v~~~~~~~~~~-~~~~~----~g~~----~-~~~~~~~---~~~~vD~v 229 (329)
T cd08298 163 AGLKPGQRLGLYGFGASAHLALQIARYQGAEVFAFTRSGEHQ-ELARE----LGAD----W-AGDSDDL---PPEPLDAA 229 (329)
T ss_pred hCCCCCCEEEEECCcHHHHHHHHHHHHCCCeEEEEcCChHHH-HHHHH----hCCc----E-EeccCcc---CCCcccEE
Confidence 345567788877654 23333445566688999998887543 43322 1220 0 0111111 22358887
Q ss_pred EEcccccCCcChHHHHHHHHHHHHhcCCCCceEee
Q 026036 152 LASDILLYVKQYSNLIKSLSVLLKSYKPKDSQVGH 186 (244)
Q Consensus 152 ~~~~~l~~~~~~~~l~~~l~~~~~~lk~gG~~~~~ 186 (244)
+..... . ..+..+.+.++++|+++..
T Consensus 230 i~~~~~------~---~~~~~~~~~l~~~G~~v~~ 255 (329)
T cd08298 230 IIFAPV------G---ALVPAALRAVKKGGRVVLA 255 (329)
T ss_pred EEcCCc------H---HHHHHHHHHhhcCCEEEEE
Confidence 753221 2 4566788999999998865
|
These alcohol dehydrogenases are related to the cinnamyl alcohol dehydrogenases (CAD), members of the medium chain dehydrogenase/reductase family. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Cinnamyl alcohol dehydrogenases (CAD) reduce cinnamaldehydes to cinnamyl alcohols in the last step of monolignal metabolism in plant cells walls. CAD binds 2 zinc ions and is NADPH- dependent. CAD family members are also found in non-plant species, e.g. in yeast where they have an aldehyde reductase activity. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short cha |
| >KOG1209 consensus 1-Acyl dihydroxyacetone phosphate reductase and related dehydrogenases [Secondary metabolites biosynthesis, transport and catabolism] | Back alignment and domain information |
|---|
Probab=84.21 E-value=3.1 Score=33.13 Aligned_cols=35 Identities=11% Similarity=0.238 Sum_probs=29.1
Q ss_pred cCCeEEEeCCCCcHHHHHHHHhC---CCeEEEEeCChH
Q 026036 77 ERRRCIELGSGTGALAIFLRKAM---NLDITTSDYNDQ 111 (244)
Q Consensus 77 ~~~~VLdlG~G~G~~~~~~a~~~---~~~v~~~D~~~~ 111 (244)
..+.||=.||..|.++.++++.+ +.+|+++--+-+
T Consensus 6 ~~k~VlItgcs~GGIG~ala~ef~~~G~~V~AtaR~~e 43 (289)
T KOG1209|consen 6 QPKKVLITGCSSGGIGYALAKEFARNGYLVYATARRLE 43 (289)
T ss_pred CCCeEEEeecCCcchhHHHHHHHHhCCeEEEEEccccc
Confidence 44689999999999998888776 888999887654
|
|
| >PRK01438 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional | Back alignment and domain information |
|---|
Probab=83.84 E-value=15 Score=32.87 Aligned_cols=75 Identities=21% Similarity=0.117 Sum_probs=40.4
Q ss_pred cccCCeEEEeCCC-CcHHHHHHHHhCCCeEEEEeCChHHHHHHHHHhHHhcCCCCCcceEeeecCCCCCCCCCCccEEEE
Q 026036 75 WIERRRCIELGSG-TGALAIFLRKAMNLDITTSDYNDQEIEDNIAYNSTTNGITPALPHIKHSWGDAFPIPNPDWDLILA 153 (244)
Q Consensus 75 ~~~~~~VLdlG~G-~G~~~~~~a~~~~~~v~~~D~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fD~I~~ 153 (244)
...+++|+=+|+| +|.-...++...+.+|+++|.++........+.+...++ ... .+.... ....+|+|+.
T Consensus 13 ~~~~~~v~viG~G~~G~~~A~~L~~~G~~V~~~d~~~~~~~~~~~~~l~~~gv----~~~---~~~~~~-~~~~~D~Vv~ 84 (480)
T PRK01438 13 DWQGLRVVVAGLGVSGFAAADALLELGARVTVVDDGDDERHRALAAILEALGA----TVR---LGPGPT-LPEDTDLVVT 84 (480)
T ss_pred CcCCCEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCchhhhHHHHHHHHHcCC----EEE---ECCCcc-ccCCCCEEEE
Confidence 3467799999987 444332233334788999997653221333333444444 111 111111 1235898888
Q ss_pred cccc
Q 026036 154 SDIL 157 (244)
Q Consensus 154 ~~~l 157 (244)
+..+
T Consensus 85 s~Gi 88 (480)
T PRK01438 85 SPGW 88 (480)
T ss_pred CCCc
Confidence 7766
|
|
| >COG0275 Predicted S-adenosylmethionine-dependent methyltransferase involved in cell envelope biogenesis [Cell envelope biogenesis, outer membrane] | Back alignment and domain information |
|---|
Probab=83.39 E-value=6.8 Score=32.79 Aligned_cols=57 Identities=11% Similarity=-0.035 Sum_probs=44.2
Q ss_pred HHHHHhhccCcccCCeEEEeCCCCcHHHHHHHHhCC--CeEEEEeCChHHHHHHHHHhHH
Q 026036 65 FAEWLMHHREWIERRRCIELGSGTGALAIFLRKAMN--LDITTSDYNDQEIEDNIAYNST 122 (244)
Q Consensus 65 l~~~~~~~~~~~~~~~VLdlG~G~G~~~~~~a~~~~--~~v~~~D~~~~~l~~~~~~~~~ 122 (244)
|.+-+.....+.++...+|.--|.|..+..+..+++ .+++++|.++.++ +.++....
T Consensus 11 Ll~E~i~~L~~~~~giyiD~TlG~GGHS~~iL~~l~~~~~li~~DrD~~Ai-~~a~~~l~ 69 (314)
T COG0275 11 LLNEVVELLAPKPDGIYIDGTLGAGGHSRAILEKLPDLGRLIGIDRDPQAI-AIAKERLK 69 (314)
T ss_pred HHHHHHHhcccCCCcEEEEecCCCcHhHHHHHHhCCCCCeEEEEcCCHHHH-HHHHHHhh
Confidence 333444455666788999999999999999988873 6799999999987 77766543
|
|
| >cd05285 sorbitol_DH Sorbitol dehydrogenase | Back alignment and domain information |
|---|
Probab=83.18 E-value=8 Score=32.73 Aligned_cols=101 Identities=12% Similarity=0.150 Sum_probs=54.7
Q ss_pred ccCcccCCeEEEeCCCC-cHHHHHHHHhCCCe-EEEEeCChHHHHHHHHHhHHhcCCCCCcceEeeec---CCCC--CCC
Q 026036 72 HREWIERRRCIELGSGT-GALAIFLRKAMNLD-ITTSDYNDQEIEDNIAYNSTTNGITPALPHIKHSW---GDAF--PIP 144 (244)
Q Consensus 72 ~~~~~~~~~VLdlG~G~-G~~~~~~a~~~~~~-v~~~D~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~---~~~~--~~~ 144 (244)
.....++.+||=.|+|. |..++.+|+..+.+ |++++.+++.. +.++. . +....+......+ .+.+ ...
T Consensus 157 ~~~~~~g~~vlI~g~g~vG~~a~~lak~~G~~~v~~~~~~~~~~-~~~~~-~---g~~~vi~~~~~~~~~~~~~~~~~~~ 231 (343)
T cd05285 157 RAGVRPGDTVLVFGAGPIGLLTAAVAKAFGATKVVVTDIDPSRL-EFAKE-L---GATHTVNVRTEDTPESAEKIAELLG 231 (343)
T ss_pred hcCCCCCCEEEEECCCHHHHHHHHHHHHcCCcEEEEECCCHHHH-HHHHH-c---CCcEEeccccccchhHHHHHHHHhC
Confidence 34556788888877653 55556667777777 89998887654 33322 1 1110000000000 0000 011
Q ss_pred CCCccEEEEcccccCCcChHHHHHHHHHHHHhcCCCCceEee
Q 026036 145 NPDWDLILASDILLYVKQYSNLIKSLSVLLKSYKPKDSQVGH 186 (244)
Q Consensus 145 ~~~fD~I~~~~~l~~~~~~~~l~~~l~~~~~~lk~gG~~~~~ 186 (244)
...+|+|+-.-. .. ..+....+.++++|+++..
T Consensus 232 ~~~~d~vld~~g------~~---~~~~~~~~~l~~~G~~v~~ 264 (343)
T cd05285 232 GKGPDVVIECTG------AE---SCIQTAIYATRPGGTVVLV 264 (343)
T ss_pred CCCCCEEEECCC------CH---HHHHHHHHHhhcCCEEEEE
Confidence 235899886311 11 2456678889999997754
|
Sorbitol and aldose reductase are NAD(+) binding proteins of the polyol pathway, which interconverts glucose and fructose. Sorbitol dehydrogenase is tetrameric and has a single catalytic zinc per subunit. Aldose reductase catalyzes the NADP(H)-dependent conversion of glucose to sorbital, and SDH uses NAD(H) in the conversion of sorbitol to fructose. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. The medium chain alcohol dehydrogenase family (MDR) have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit. |
| >PF11899 DUF3419: Protein of unknown function (DUF3419); InterPro: IPR021829 This family of proteins are functionally uncharacterised | Back alignment and domain information |
|---|
Probab=82.75 E-value=2.2 Score=37.11 Aligned_cols=42 Identities=17% Similarity=0.187 Sum_probs=37.8
Q ss_pred CCCCccEEEEcccccCCcChHHHHHHHHHHHHhcCCCCceEee
Q 026036 144 PNPDWDLILASDILLYVKQYSNLIKSLSVLLKSYKPKDSQVGH 186 (244)
Q Consensus 144 ~~~~fD~I~~~~~l~~~~~~~~l~~~l~~~~~~lk~gG~~~~~ 186 (244)
+++++|.++.+|.. .+.+...+.+.++++.+.++|||+++.=
T Consensus 292 ~~~s~~~~vL~D~~-Dwm~~~~~~~~~~~l~~~~~pgaRV~~R 333 (380)
T PF11899_consen 292 PPGSFDRFVLSDHM-DWMDPEQLNEEWQELARTARPGARVLWR 333 (380)
T ss_pred CCCCeeEEEecchh-hhCCHHHHHHHHHHHHHHhCCCCEEEEe
Confidence 46799999999998 8888899999999999999999998764
|
This protein is found in bacteria and eukaryotes. Proteins in this family are typically between 398 to 802 amino acids in length. |
| >PF02086 MethyltransfD12: D12 class N6 adenine-specific DNA methyltransferase; InterPro: IPR012327 In prokaryotes, the major role of DNA methylation is to protect host DNA against degradation by restriction enzymes | Back alignment and domain information |
|---|
Probab=82.57 E-value=2 Score=34.87 Aligned_cols=47 Identities=17% Similarity=0.325 Sum_probs=31.8
Q ss_pred HHHHHHhhccCcccCCeEEEeCCCCcHHHHHHHHhCCCeEEEEeCChH
Q 026036 64 SFAEWLMHHREWIERRRCIELGSGTGALAIFLRKAMNLDITTSDYNDQ 111 (244)
Q Consensus 64 ~l~~~~~~~~~~~~~~~VLdlG~G~G~~~~~~a~~~~~~v~~~D~~~~ 111 (244)
.|+.++.+..+..+..+++|.-||+|.+++.+.. .+.+|+.-|+++.
T Consensus 7 ~l~~~I~~~ip~~~~~~~vepF~G~g~V~~~~~~-~~~~vi~ND~~~~ 53 (260)
T PF02086_consen 7 KLAKWIIELIPKNKHKTYVEPFAGGGSVFLNLKQ-PGKRVIINDINPD 53 (260)
T ss_dssp GGHHHHHHHS-S-S-SEEEETT-TTSHHHHCC----SSEEEEEES-HH
T ss_pred HHHHHHHHHcCCCCCCEEEEEecchhHHHHHhcc-cccceeeeechHH
Confidence 4566666654433678999999999999988865 4888999999985
|
There are 2 major classes of DNA methyltransferase that differ in the nature of the modifications they effect. The members of one class (C-MTases) methylate a ring carbon and form C5-methylcytosine (see IPR001525 from INTERPRO). Members of the second class (N-MTases) methylate exocyclic nitrogens and form either N4-methylcytosine (N4-MTases) or N6-methyladenine (N6-MTases). Both classes of MTase utilise the cofactor S-adenosyl-L-methionine (SAM) as the methyl donor and are active as monomeric enzymes []. N-6 adenine-specific DNA methylases (2.1.1.72 from EC) (A-Mtase) are enzymes that specifically methylate the amino group at the C-6 position of adenines in DNA. Such enzymes are found in the three existing types of bacterial restriction-modification systems (in type I system the A-Mtase is the product of the hsdM gene, and in type III it is the product of the mod gene). All of these enzymes recognise a specific sequence in DNA and methylate an adenine in that sequence. It has been shown [, , , ] that A-Mtases contain a conserved motif Asp/Asn-Pro-Pro-Tyr/Phe in their N-terminal section, this conserved region could be involved in substrate binding or in the catalytic activity. The structure of N6-MTase TaqI (M.TaqI) has been resolved to 2.4 A []. The molecule folds into 2 domains, an N-terminal catalytic domain, which contains the catalytic and cofactor binding sites, and comprises a central 9-stranded beta-sheet, surrounded by 5 helices; and a C-terminal DNA recognition domain, which is formed by 4 small beta-sheets and 8 alpha-helices. The N- and C-terminal domains form a cleft that accommodates the DNA substrate. A classification of N-MTases has been proposed, based on conserved motif (CM) arrangements []. According to this classification, N6-MTases that have a DPPY motif (CM II) occuring after the FxGxG motif (CM I) are designated D12 class N6-adenine MTases.; GO: 0009007 site-specific DNA-methyltransferase (adenine-specific) activity, 0032775 DNA methylation on adenine; PDB: 1Q0T_B 1YFJ_B 1Q0S_A 1YFL_B 1YF3_B 2DPM_A 2ORE_F 2G1P_B. |
| >COG0677 WecC UDP-N-acetyl-D-mannosaminuronate dehydrogenase [Cell envelope biogenesis, outer membrane] | Back alignment and domain information |
|---|
Probab=82.48 E-value=8.4 Score=33.59 Aligned_cols=39 Identities=15% Similarity=0.100 Sum_probs=24.6
Q ss_pred CccE-EEEccccc---CCcChHHHHHHHHHHHHhcCCCCceEe
Q 026036 147 DWDL-ILASDILL---YVKQYSNLIKSLSVLLKSYKPKDSQVG 185 (244)
Q Consensus 147 ~fD~-I~~~~~l~---~~~~~~~l~~~l~~~~~~lk~gG~~~~ 185 (244)
..|+ |+|..+-. ...+...+..+.+.+.+.|++|-.+++
T Consensus 84 ~~dv~iI~VPTPl~~~~~pDls~v~~aa~sIa~~L~kG~LVIl 126 (436)
T COG0677 84 ECDVFIICVPTPLKKYREPDLSYVESAARSIAPVLKKGDLVIL 126 (436)
T ss_pred cCCEEEEEecCCcCCCCCCChHHHHHHHHHHHHhcCCCCEEEE
Confidence 4564 45544443 334455667888999999999754333
|
|
| >PF02737 3HCDH_N: 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain; InterPro: IPR006176 3-hydroxyacyl-CoA dehydrogenase (1 | Back alignment and domain information |
|---|
Probab=82.41 E-value=14 Score=28.35 Aligned_cols=147 Identities=12% Similarity=0.096 Sum_probs=67.3
Q ss_pred EEEeCCCCcHHHHH--HHHhCCCeEEEEeCChHHHHHHHHHhHH--------hcCCCC-----CcceEeeecCCCCCCCC
Q 026036 81 CIELGSGTGALAIF--LRKAMNLDITTSDYNDQEIEDNIAYNST--------TNGITP-----ALPHIKHSWGDAFPIPN 145 (244)
Q Consensus 81 VLdlG~G~G~~~~~--~a~~~~~~v~~~D~~~~~l~~~~~~~~~--------~~~~~~-----~~~~~~~~~~~~~~~~~ 145 (244)
|-=+|+|+=..+++ ++. .+.+|+..|.+++.+ +.+++.+. ...++. ....+. +...+....
T Consensus 2 V~ViGaG~mG~~iA~~~a~-~G~~V~l~d~~~~~l-~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~i~--~~~dl~~~~ 77 (180)
T PF02737_consen 2 VAVIGAGTMGRGIAALFAR-AGYEVTLYDRSPEAL-ERARKRIERLLDRLVRKGRLSQEEADAALARIS--FTTDLEEAV 77 (180)
T ss_dssp EEEES-SHHHHHHHHHHHH-TTSEEEEE-SSHHHH-HHHHHHHHHHHHHHHHTTTTTHHHHHHHHHTEE--EESSGGGGC
T ss_pred EEEEcCCHHHHHHHHHHHh-CCCcEEEEECChHHH-HhhhhHHHHHHhhhhhhccchhhhhhhhhhhcc--cccCHHHHh
Confidence 44567764333332 333 389999999999875 33332222 112210 011111 112222222
Q ss_pred CCccEEEEcccccCCcChHHHHHHHHHHHHhcCCCCceEeecccccCC------------CCCCCCC----CCeEEEeee
Q 026036 146 PDWDLILASDILLYVKQYSNLIKSLSVLLKSYKPKDSQVGHLTKNEQG------------EGTEGLP----WPAFLMSWR 209 (244)
Q Consensus 146 ~~fD~I~~~~~l~~~~~~~~l~~~l~~~~~~lk~gG~~~~~~~~~~~~------------~~~~~~~----~~~~~~~~~ 209 (244)
..|+|+=+- .+..+.-.+.++++.+.+.|+-.+...+....-. .+.++.. .|....-..
T Consensus 78 -~adlViEai----~E~l~~K~~~~~~l~~~~~~~~ilasnTSsl~i~~la~~~~~p~R~ig~Hf~~P~~~~~lVEvv~~ 152 (180)
T PF02737_consen 78 -DADLVIEAI----PEDLELKQELFAELDEICPPDTILASNTSSLSISELAAALSRPERFIGMHFFNPPHLMPLVEVVPG 152 (180)
T ss_dssp -TESEEEE-S-----SSHHHHHHHHHHHHCCS-TTSEEEE--SSS-HHHHHTTSSTGGGEEEEEE-SSTTT--EEEEEE-
T ss_pred -hhheehhhc----cccHHHHHHHHHHHHHHhCCCceEEecCCCCCHHHHHhccCcCceEEEEecccccccCceEEEeCC
Confidence 578887632 2455555688899999998887555442222111 0111111 122333333
Q ss_pred eccCccchhhHHHHHhhcCCeEEEecc
Q 026036 210 RRIGKEDETIFFTSCENAGLEVKHLGS 236 (244)
Q Consensus 210 ~~~~~~~~~~~~~~l~~~Gf~v~~~~~ 236 (244)
++-..+..+...+++++.|.....+.+
T Consensus 153 ~~T~~~~~~~~~~~~~~~gk~pv~v~D 179 (180)
T PF02737_consen 153 PKTSPETVDRVRALLRSLGKTPVVVKD 179 (180)
T ss_dssp TTS-HHHHHHHHHHHHHTT-EEEEEES
T ss_pred CCCCHHHHHHHHHHHHHCCCEEEEecC
Confidence 333333445666788888988877643
|
1.1.35 from EC) (HCDH) [] is an enzyme involved in fatty acid metabolism, it catalyzes the reduction of 3-hydroxyacyl-CoA to 3-oxoacyl-CoA. Most eukaryotic cells have 2 fatty-acid beta-oxidation systems, one located in mitochondria and the other in peroxisomes. In peroxisomes 3-hydroxyacyl-CoA dehydrogenase forms, with enoyl-CoA hydratase (ECH) and 3,2-trans-enoyl-CoA isomerase (ECI) a multifunctional enzyme where the N-terminal domain bears the hydratase/isomerase activities and the C-terminal domain the dehydrogenase activity. There are two mitochondrial enzymes: one which is monofunctional and the other which is, like its peroxisomal counterpart, multifunctional. In Escherichia coli (gene fadB) and Pseudomonas fragi (gene faoA) HCDH is part of a multifunctional enzyme which also contains an ECH/ECI domain as well as a 3-hydroxybutyryl-CoA epimerase domain []. There are two major regions of similarity in the sequences of proteins of the HCDH family, the first one located in the N-terminal, corresponds to the NAD-binding site, the second one is located in the centre of the sequence. This represents the C-terminal domain which is also found in lambda crystallin. Some proteins include two copies of this domain.; GO: 0003857 3-hydroxyacyl-CoA dehydrogenase activity, 0016491 oxidoreductase activity, 0006631 fatty acid metabolic process, 0055114 oxidation-reduction process; PDB: 3K6J_A 1ZCJ_A 2X58_A 1ZEJ_A 3HDH_B 2WTB_A 1WDL_B 2D3T_B 1WDK_A 1WDM_B .... |
| >cd08261 Zn_ADH7 Alcohol dehydrogenases of the MDR family | Back alignment and domain information |
|---|
Probab=82.39 E-value=5.9 Score=33.39 Aligned_cols=100 Identities=12% Similarity=0.081 Sum_probs=56.1
Q ss_pred cCcccCCeEEEeCCC-CcHHHHHHHHhCCCeEEEEeCChHHHHHHHHHhHHhcCCCCCcceEeeecCCCCC--CCCCCcc
Q 026036 73 REWIERRRCIELGSG-TGALAIFLRKAMNLDITTSDYNDQEIEDNIAYNSTTNGITPALPHIKHSWGDAFP--IPNPDWD 149 (244)
Q Consensus 73 ~~~~~~~~VLdlG~G-~G~~~~~~a~~~~~~v~~~D~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~fD 149 (244)
....++.+||-.|+| .|..++.+|+..+.+|+++..+++.. +.++.. +....+......+.+.+. .....+|
T Consensus 155 ~~l~~g~~vLI~g~g~vG~~a~~lA~~~g~~v~~~~~s~~~~-~~~~~~----g~~~v~~~~~~~~~~~l~~~~~~~~vd 229 (337)
T cd08261 155 AGVTAGDTVLVVGAGPIGLGVIQVAKARGARVIVVDIDDERL-EFAREL----GADDTINVGDEDVAARLRELTDGEGAD 229 (337)
T ss_pred cCCCCCCEEEEECCCHHHHHHHHHHHHcCCeEEEECCCHHHH-HHHHHh----CCCEEecCcccCHHHHHHHHhCCCCCC
Confidence 345678899999875 35666677777789999998777654 444321 110000000000001010 1123589
Q ss_pred EEEEcccccCCcChHHHHHHHHHHHHhcCCCCceEee
Q 026036 150 LILASDILLYVKQYSNLIKSLSVLLKSYKPKDSQVGH 186 (244)
Q Consensus 150 ~I~~~~~l~~~~~~~~l~~~l~~~~~~lk~gG~~~~~ 186 (244)
+++.. + . .. ..+..+.+.++++|+++..
T Consensus 230 ~vld~--~-g---~~---~~~~~~~~~l~~~G~~i~~ 257 (337)
T cd08261 230 VVIDA--T-G---NP---ASMEEAVELVAHGGRVVLV 257 (337)
T ss_pred EEEEC--C-C---CH---HHHHHHHHHHhcCCEEEEE
Confidence 98863 1 1 11 4456678888999997754
|
This group contains members identified as related to zinc-dependent alcohol dehydrogenase and other members of the MDR family. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group includes various activities, including the founding alcohol dehydrogenase (ADH), quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, |
| >cd08296 CAD_like Cinnamyl alcohol dehydrogenases (CAD) | Back alignment and domain information |
|---|
Probab=82.09 E-value=8.7 Score=32.37 Aligned_cols=98 Identities=18% Similarity=0.142 Sum_probs=53.3
Q ss_pred CcccCCeEEEeCCC-CcHHHHHHHHhCCCeEEEEeCChHHHHHHHHHhHHhcCCCCCcceEeeecCCCCCCCCCCccEEE
Q 026036 74 EWIERRRCIELGSG-TGALAIFLRKAMNLDITTSDYNDQEIEDNIAYNSTTNGITPALPHIKHSWGDAFPIPNPDWDLIL 152 (244)
Q Consensus 74 ~~~~~~~VLdlG~G-~G~~~~~~a~~~~~~v~~~D~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fD~I~ 152 (244)
...++.+||=.|+| .|.....+++..+.+|++++.+++.. +.+++. +....+.....++.+.+... ..+|+++
T Consensus 160 ~~~~~~~vlV~g~g~iG~~~~~~a~~~G~~vi~~~~~~~~~-~~~~~~----g~~~~i~~~~~~~~~~~~~~-~~~d~vi 233 (333)
T cd08296 160 GAKPGDLVAVQGIGGLGHLAVQYAAKMGFRTVAISRGSDKA-DLARKL----GAHHYIDTSKEDVAEALQEL-GGAKLIL 233 (333)
T ss_pred CCCCCCEEEEECCcHHHHHHHHHHHHCCCeEEEEeCChHHH-HHHHHc----CCcEEecCCCccHHHHHHhc-CCCCEEE
Confidence 45577889888853 44445556666688999999887654 444321 11100000000000000001 2478887
Q ss_pred EcccccCCcChHHHHHHHHHHHHhcCCCCceEee
Q 026036 153 ASDILLYVKQYSNLIKSLSVLLKSYKPKDSQVGH 186 (244)
Q Consensus 153 ~~~~l~~~~~~~~l~~~l~~~~~~lk~gG~~~~~ 186 (244)
.. . . .. ..+....+.++++|+++..
T Consensus 234 ~~--~---g-~~---~~~~~~~~~l~~~G~~v~~ 258 (333)
T cd08296 234 AT--A---P-NA---KAISALVGGLAPRGKLLIL 258 (333)
T ss_pred EC--C---C-ch---HHHHHHHHHcccCCEEEEE
Confidence 52 1 0 12 4566678889999988765
|
Cinnamyl alcohol dehydrogenases (CAD), members of the medium chain dehydrogenase/reductase family, reduce cinnamaldehydes to cinnamyl alcohols in the last step of monolignal metabolism in plant cells walls. CAD binds 2 zinc ions and is NADPH- dependent. CAD family members are also found in non-plant species, e.g. in yeast where they have an aldehyde reductase activity. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catal |
| >KOG1098 consensus Putative SAM-dependent rRNA methyltransferase SPB1 [RNA processing and modification; General function prediction only] | Back alignment and domain information |
|---|
Probab=82.07 E-value=2.2 Score=39.02 Aligned_cols=50 Identities=12% Similarity=0.100 Sum_probs=37.5
Q ss_pred hHHHHHHHHhhccCcccCCeEEEeCCCCcHHHHHHHHhC--CCeEEEEeCCh
Q 026036 61 GTFSFAEWLMHHREWIERRRCIELGSGTGALAIFLRKAM--NLDITTSDYND 110 (244)
Q Consensus 61 ~~~~l~~~~~~~~~~~~~~~VLdlG~G~G~~~~~~a~~~--~~~v~~~D~~~ 110 (244)
++..|...=..+..+-++..||||||-.|.....+++.. +.-|+|+|+-+
T Consensus 28 saFKLlQln~ky~fl~~a~~vlDLcaAPG~W~QVA~q~~pv~slivGvDl~p 79 (780)
T KOG1098|consen 28 SAFKLLQLNKKYKFLEKAHVVLDLCAAPGGWLQVASQSMPVGSLIVGVDLVP 79 (780)
T ss_pred HHHHHHHHHHHhccccccchheeeccCCcHHHHHHHHhCCCCceEEEeeeee
Confidence 455554444444445577899999999999998888776 66799999965
|
|
| >PF05050 Methyltransf_21: Methyltransferase FkbM domain; InterPro: IPR007744 This entry contains proteins of unknown function | Back alignment and domain information |
|---|
Probab=82.06 E-value=6.9 Score=28.96 Aligned_cols=43 Identities=14% Similarity=0.268 Sum_probs=25.9
Q ss_pred EeCCCCc--HHHHHHH--HhC-CCeEEEEeCChHHHHHHHHHh--HHhcCC
Q 026036 83 ELGSGTG--ALAIFLR--KAM-NLDITTSDYNDQEIEDNIAYN--STTNGI 126 (244)
Q Consensus 83 dlG~G~G--~~~~~~a--~~~-~~~v~~~D~~~~~l~~~~~~~--~~~~~~ 126 (244)
|+|+..| .....+. ... ..+|+++|.++..+ +.++++ +..+..
T Consensus 1 DvGA~~G~~~~~~~~~~~~~~~~~~v~~~Ep~p~~~-~~l~~~~~~~l~~~ 50 (167)
T PF05050_consen 1 DVGANIGFWSSTVYFLEKKCGPGGRVHAFEPNPSNF-EKLKRNLNLALNDK 50 (167)
T ss_dssp EES-TTS--HHHHHHHHHHTS--SEEEEE---HHHH-HHHHHH--HHHTTT
T ss_pred CcccCCChhHHHHHHHHHHcCCCCEEEEEECCHHHH-HHHhHHHHHHhcCC
Confidence 8999999 4444443 222 67899999999876 677777 666544
|
; PDB: 2PY6_A. |
| >PLN02514 cinnamyl-alcohol dehydrogenase | Back alignment and domain information |
|---|
Probab=81.57 E-value=8.4 Score=32.98 Aligned_cols=93 Identities=18% Similarity=0.168 Sum_probs=50.7
Q ss_pred ccCCeEEEeCCC-CcHHHHHHHHhCCCeEEEEeCChHHHHHHHHHhHHhcCCCCCcceEeeecCC--CCCCCCCCccEEE
Q 026036 76 IERRRCIELGSG-TGALAIFLRKAMNLDITTSDYNDQEIEDNIAYNSTTNGITPALPHIKHSWGD--AFPIPNPDWDLIL 152 (244)
Q Consensus 76 ~~~~~VLdlG~G-~G~~~~~~a~~~~~~v~~~D~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~fD~I~ 152 (244)
.+|.+||=.|+| .|..++.+|+..+.+|++++.+++.. ..+.+. .+... .+ ...+ .+......+|+|+
T Consensus 179 ~~g~~vlV~G~G~vG~~av~~Ak~~G~~vi~~~~~~~~~-~~~~~~---~Ga~~---~i--~~~~~~~~~~~~~~~D~vi 249 (357)
T PLN02514 179 QSGLRGGILGLGGVGHMGVKIAKAMGHHVTVISSSDKKR-EEALEH---LGADD---YL--VSSDAAEMQEAADSLDYII 249 (357)
T ss_pred CCCCeEEEEcccHHHHHHHHHHHHCCCeEEEEeCCHHHH-HHHHHh---cCCcE---Ee--cCCChHHHHHhcCCCcEEE
Confidence 467888888763 45555666777788888888776543 222211 12210 00 0101 0000112478776
Q ss_pred EcccccCCcChHHHHHHHHHHHHhcCCCCceEee
Q 026036 153 ASDILLYVKQYSNLIKSLSVLLKSYKPKDSQVGH 186 (244)
Q Consensus 153 ~~~~l~~~~~~~~l~~~l~~~~~~lk~gG~~~~~ 186 (244)
- ++ ... ..+....+.++++|+++..
T Consensus 250 d--~~----g~~---~~~~~~~~~l~~~G~iv~~ 274 (357)
T PLN02514 250 D--TV----PVF---HPLEPYLSLLKLDGKLILM 274 (357)
T ss_pred E--CC----Cch---HHHHHHHHHhccCCEEEEE
Confidence 4 22 112 4556677889999987765
|
|
| >COG0062 Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=81.48 E-value=19 Score=28.35 Aligned_cols=117 Identities=13% Similarity=0.137 Sum_probs=53.6
Q ss_pred hHHHHHHHHhhccCcccCCeEEEeCCCCcHH---HHHHHHhC---CCe--EEEEeCChHHHHHHHHHhHHhcCCCCCcce
Q 026036 61 GTFSFAEWLMHHREWIERRRCIELGSGTGAL---AIFLRKAM---NLD--ITTSDYNDQEIEDNIAYNSTTNGITPALPH 132 (244)
Q Consensus 61 ~~~~l~~~~~~~~~~~~~~~VLdlG~G~G~~---~~~~a~~~---~~~--v~~~D~~~~~l~~~~~~~~~~~~~~~~~~~ 132 (244)
++..+++.+.+..+.....+|+=+ ||+|.. ++.+|+.. +.. |...--......+.++.|....+... .
T Consensus 32 AG~aVa~~i~~~~~~~~~~~v~vl-cG~GnNGGDG~VaAR~L~~~G~~V~v~~~~~~~~~~~~~a~~~~~~l~~~~---~ 107 (203)
T COG0062 32 AGLAVARAILREYPLGRARRVLVL-CGPGNNGGDGLVAARHLKAAGYAVTVLLLGDPKKLKTEAARANLKSLGIGG---V 107 (203)
T ss_pred HHHHHHHHHHHHcCcccCCEEEEE-ECCCCccHHHHHHHHHHHhCCCceEEEEeCCCCCccHHHHHHHHHhhcCCc---c
Confidence 566677777666543334566665 777644 45555443 333 44433222212244444433323211 1
Q ss_pred EeeecCCCCCCCCCCccEEEEcccccCCcChHHHHHHHHHHHHhcCCCCceEee
Q 026036 133 IKHSWGDAFPIPNPDWDLILASDILLYVKQYSNLIKSLSVLLKSYKPKDSQVGH 186 (244)
Q Consensus 133 ~~~~~~~~~~~~~~~fD~I~~~~~l~~~~~~~~l~~~l~~~~~~lk~gG~~~~~ 186 (244)
+ .+.+... ....+|+|| |.+|-..-...+..-++.+...+...|+.++.
T Consensus 108 v--~~~~~~~-~~~~~dvIV--DalfG~G~~g~lrep~a~~Ie~iN~~~~pivA 156 (203)
T COG0062 108 V--KIKELED-EPESADVIV--DALFGTGLSGPLREPFASLIEAINASGKPIVA 156 (203)
T ss_pred e--eeccccc-ccccCCEEE--EeceecCCCCCCccHHHHHHHHHHhcCCceEE
Confidence 1 1111110 234688876 56654333333334444444445555664444
|
|
| >PRK06701 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=81.29 E-value=16 Score=30.21 Aligned_cols=34 Identities=12% Similarity=0.254 Sum_probs=22.4
Q ss_pred ccCCeEEEeCCCCcHHHHHHHHhC---CCeEEEEeCCh
Q 026036 76 IERRRCIELGSGTGALAIFLRKAM---NLDITTSDYND 110 (244)
Q Consensus 76 ~~~~~VLdlG~G~G~~~~~~a~~~---~~~v~~~D~~~ 110 (244)
.++++||=.|++.| ++..+++.. +.+|+.++.+.
T Consensus 44 ~~~k~iLItGasgg-IG~~la~~l~~~G~~V~l~~r~~ 80 (290)
T PRK06701 44 LKGKVALITGGDSG-IGRAVAVLFAKEGADIAIVYLDE 80 (290)
T ss_pred CCCCEEEEeCCCcH-HHHHHHHHHHHCCCEEEEEeCCc
Confidence 36778888886544 444444332 78899998765
|
|
| >PRK03369 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional | Back alignment and domain information |
|---|
Probab=81.25 E-value=12 Score=33.81 Aligned_cols=71 Identities=14% Similarity=0.185 Sum_probs=41.4
Q ss_pred cccCCeEEEeCCC-CcHHHHHHHHhCCCeEEEEeCChHHHHHHHHHhHHhcCCCCCcceEeeecCCCCCCCCCCccEEEE
Q 026036 75 WIERRRCIELGSG-TGALAIFLRKAMNLDITTSDYNDQEIEDNIAYNSTTNGITPALPHIKHSWGDAFPIPNPDWDLILA 153 (244)
Q Consensus 75 ~~~~~~VLdlG~G-~G~~~~~~a~~~~~~v~~~D~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fD~I~~ 153 (244)
..++++|+=+|.| +|..+..++...+.+|+++|..+..+ +.+ ...++ ..+ .+.........+|+|+.
T Consensus 9 ~~~~~~v~V~G~G~sG~aa~~~L~~~G~~v~~~D~~~~~~-~~l----~~~g~----~~~---~~~~~~~~l~~~D~VV~ 76 (488)
T PRK03369 9 LLPGAPVLVAGAGVTGRAVLAALTRFGARPTVCDDDPDAL-RPH----AERGV----ATV---STSDAVQQIADYALVVT 76 (488)
T ss_pred ccCCCeEEEEcCCHHHHHHHHHHHHCCCEEEEEcCCHHHH-HHH----HhCCC----EEE---cCcchHhHhhcCCEEEE
Confidence 3467899999987 55555555555688999999775443 222 21233 111 11111111135799999
Q ss_pred cccc
Q 026036 154 SDIL 157 (244)
Q Consensus 154 ~~~l 157 (244)
+..+
T Consensus 77 SpGi 80 (488)
T PRK03369 77 SPGF 80 (488)
T ss_pred CCCC
Confidence 8887
|
|
| >PRK10309 galactitol-1-phosphate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=80.87 E-value=7.7 Score=32.90 Aligned_cols=99 Identities=19% Similarity=0.228 Sum_probs=52.5
Q ss_pred CcccCCeEEEeCCC-CcHHHHHHHHhCCCe-EEEEeCChHHHHHHHHHhHHhcCCCCCcceEeeecCCCCCC-CCCCcc-
Q 026036 74 EWIERRRCIELGSG-TGALAIFLRKAMNLD-ITTSDYNDQEIEDNIAYNSTTNGITPALPHIKHSWGDAFPI-PNPDWD- 149 (244)
Q Consensus 74 ~~~~~~~VLdlG~G-~G~~~~~~a~~~~~~-v~~~D~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~fD- 149 (244)
...++.+||=.|+| .|..++.+|+..+.+ |++++.+++.. +.++. . +....+............. ....+|
T Consensus 157 ~~~~g~~vlV~G~g~vG~~~~~~a~~~G~~~v~~~~~~~~~~-~~~~~-~---Ga~~~i~~~~~~~~~~~~~~~~~~~d~ 231 (347)
T PRK10309 157 QGCEGKNVIIIGAGTIGLLAIQCAVALGAKSVTAIDINSEKL-ALAKS-L---GAMQTFNSREMSAPQIQSVLRELRFDQ 231 (347)
T ss_pred CCCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEECCCHHHH-HHHHH-c---CCceEecCcccCHHHHHHHhcCCCCCe
Confidence 44578899999874 444555566666776 78999888654 44332 1 1100000000000000000 123567
Q ss_pred EEEEcccccCCcChHHHHHHHHHHHHhcCCCCceEee
Q 026036 150 LILASDILLYVKQYSNLIKSLSVLLKSYKPKDSQVGH 186 (244)
Q Consensus 150 ~I~~~~~l~~~~~~~~l~~~l~~~~~~lk~gG~~~~~ 186 (244)
+|+- +. ..+ .++....+.+++||++++.
T Consensus 232 ~v~d--~~----G~~---~~~~~~~~~l~~~G~iv~~ 259 (347)
T PRK10309 232 LILE--TA----GVP---QTVELAIEIAGPRAQLALV 259 (347)
T ss_pred EEEE--CC----CCH---HHHHHHHHHhhcCCEEEEE
Confidence 4442 32 122 4667778899999998765
|
|
| >PRK08324 short chain dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=80.83 E-value=16 Score=34.54 Aligned_cols=77 Identities=9% Similarity=0.135 Sum_probs=41.4
Q ss_pred ccCCeEEEeCCCCcHHHHHHHHhC---CCeEEEEeCChHHHHHHHHHhHHhcCCCCCcceEeeecCCCCCC---------
Q 026036 76 IERRRCIELGSGTGALAIFLRKAM---NLDITTSDYNDQEIEDNIAYNSTTNGITPALPHIKHSWGDAFPI--------- 143 (244)
Q Consensus 76 ~~~~~VLdlG~G~G~~~~~~a~~~---~~~v~~~D~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------- 143 (244)
.+|++||=.|+ +|.+|..+++.. +.+|+++|.+++.+ +......... ..+..+..+..+....
T Consensus 420 l~gk~vLVTGa-sggIG~~la~~L~~~Ga~Vvl~~r~~~~~-~~~~~~l~~~---~~v~~v~~Dvtd~~~v~~~~~~~~~ 494 (681)
T PRK08324 420 LAGKVALVTGA-AGGIGKATAKRLAAEGACVVLADLDEEAA-EAAAAELGGP---DRALGVACDVTDEAAVQAAFEEAAL 494 (681)
T ss_pred CCCCEEEEecC-CCHHHHHHHHHHHHCcCEEEEEeCCHHHH-HHHHHHHhcc---CcEEEEEecCCCHHHHHHHHHHHHH
Confidence 35678887775 444555444333 77899999998654 3332222111 1223444444432110
Q ss_pred CCCCccEEEEcccc
Q 026036 144 PNPDWDLILASDIL 157 (244)
Q Consensus 144 ~~~~fD~I~~~~~l 157 (244)
..+.+|+|+.+-..
T Consensus 495 ~~g~iDvvI~~AG~ 508 (681)
T PRK08324 495 AFGGVDIVVSNAGI 508 (681)
T ss_pred HcCCCCEEEECCCC
Confidence 12368998887654
|
|
| >PF02153 PDH: Prephenate dehydrogenase; InterPro: IPR003099 Members of this family are prephenate dehydrogenases 1 | Back alignment and domain information |
|---|
Probab=80.76 E-value=8.6 Score=31.45 Aligned_cols=71 Identities=23% Similarity=0.253 Sum_probs=37.1
Q ss_pred HHHHHHhC-CCeEEEEeCChHHHHHHHHHhHHhcCCCCCcceEeeecCCCCCCCCCCccEEEEcccccCCcChHHHHHHH
Q 026036 92 AIFLRKAM-NLDITTSDYNDQEIEDNIAYNSTTNGITPALPHIKHSWGDAFPIPNPDWDLILASDILLYVKQYSNLIKSL 170 (244)
Q Consensus 92 ~~~~a~~~-~~~v~~~D~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fD~I~~~~~l~~~~~~~~l~~~l 170 (244)
+..+.+.+ ..+|++.|.++..+ +.+.+ .++. .... . + .. .-..+|+|+.+-++ ....+++
T Consensus 2 A~aL~~~g~~~~v~g~d~~~~~~-~~a~~----~g~~---~~~~--~-~-~~-~~~~~DlvvlavP~------~~~~~~l 62 (258)
T PF02153_consen 2 ALALRKAGPDVEVYGYDRDPETL-EAALE----LGII---DEAS--T-D-IE-AVEDADLVVLAVPV------SAIEDVL 62 (258)
T ss_dssp HHHHHHTTTTSEEEEE-SSHHHH-HHHHH----TTSS---SEEE--S-H-HH-HGGCCSEEEE-S-H------HHHHHHH
T ss_pred hHHHHhCCCCeEEEEEeCCHHHH-HHHHH----CCCe---eecc--C-C-Hh-HhcCCCEEEEcCCH------HHHHHHH
Confidence 55666665 57999999999765 33322 1221 1110 0 0 00 11346888875443 3455777
Q ss_pred HHHHHhcCCCC
Q 026036 171 SVLLKSYKPKD 181 (244)
Q Consensus 171 ~~~~~~lk~gG 181 (244)
+++...+++|+
T Consensus 63 ~~~~~~~~~~~ 73 (258)
T PF02153_consen 63 EEIAPYLKPGA 73 (258)
T ss_dssp HHHHCGS-TTS
T ss_pred HHhhhhcCCCc
Confidence 77777777765
|
3.1.12 from EC involved in tyrosine biosynthesis. ; GO: 0004665 prephenate dehydrogenase (NADP+) activity, 0008977 prephenate dehydrogenase activity, 0006571 tyrosine biosynthetic process, 0055114 oxidation-reduction process; PDB: 2F1K_B 2PV7_A 3DZB_B 3KTD_B 3B1F_A 2G5C_D 3GGP_C 3GGG_C 3GGO_D. |
| >cd05278 FDH_like Formaldehyde dehydrogenases | Back alignment and domain information |
|---|
Probab=80.59 E-value=6.1 Score=33.35 Aligned_cols=99 Identities=13% Similarity=0.168 Sum_probs=52.8
Q ss_pred CcccCCeEEEeCCC-CcHHHHHHHHhCCC-eEEEEeCChHHHHHHHHHhHHhcCCCCCcceEeeecCCCCC--CCCCCcc
Q 026036 74 EWIERRRCIELGSG-TGALAIFLRKAMNL-DITTSDYNDQEIEDNIAYNSTTNGITPALPHIKHSWGDAFP--IPNPDWD 149 (244)
Q Consensus 74 ~~~~~~~VLdlG~G-~G~~~~~~a~~~~~-~v~~~D~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~fD 149 (244)
...++.+||-.|+| .|..++.+|+..+. .|++++.++... +.+++. +....+......+.+.+. .....+|
T Consensus 164 ~~~~~~~VlI~g~g~vg~~~iqlak~~g~~~v~~~~~~~~~~-~~~~~~----g~~~vi~~~~~~~~~~i~~~~~~~~~d 238 (347)
T cd05278 164 GIKPGSTVAVIGAGPVGLCAVAGARLLGAARIIAVDSNPERL-DLAKEA----GATDIINPKNGDIVEQILELTGGRGVD 238 (347)
T ss_pred CCCCCCEEEEECCCHHHHHHHHHHHHcCCCEEEEEeCCHHHH-HHHHHh----CCcEEEcCCcchHHHHHHHHcCCCCCc
Confidence 34567899887764 35556666776674 789998776554 433322 110000000000101000 1124689
Q ss_pred EEEEcccccCCcChHHHHHHHHHHHHhcCCCCceEee
Q 026036 150 LILASDILLYVKQYSNLIKSLSVLLKSYKPKDSQVGH 186 (244)
Q Consensus 150 ~I~~~~~l~~~~~~~~l~~~l~~~~~~lk~gG~~~~~ 186 (244)
+|+.. . . .. ..+....+.++++|+++..
T Consensus 239 ~vld~--~---g-~~---~~~~~~~~~l~~~G~~v~~ 266 (347)
T cd05278 239 CVIEA--V---G-FE---ETFEQAVKVVRPGGTIANV 266 (347)
T ss_pred EEEEc--c---C-CH---HHHHHHHHHhhcCCEEEEE
Confidence 88752 2 1 11 3556677888999987754
|
Formaldehyde dehydrogenase (FDH) is a member of the zinc-dependent/medium chain alcohol dehydrogenase family. Formaldehyde dehydrogenase (aka ADH3) may be the ancestral form of alcohol dehydrogenase, which evolved to detoxify formaldehyde. This CD contains glutathione dependant FDH, glutathione independent FDH, and related alcohol dehydrogenases. FDH converts formaldehyde and NAD(P) to formate and NAD(P)H. The initial step in this process the spontaneous formation of a S-(hydroxymethyl)glutathione adduct from formaldehyde and glutathione, followed by FDH-mediated oxidation (and detoxification) of the adduct to S-formylglutathione. Unlike typical FDH, Pseudomonas putida aldehyde-dismutating FDH (PFDH) is glutathione-independent. The medium chain alcohol dehydrogenase family (MDR) have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typicall |
| >PRK05708 2-dehydropantoate 2-reductase; Provisional | Back alignment and domain information |
|---|
Probab=80.57 E-value=18 Score=30.31 Aligned_cols=97 Identities=14% Similarity=0.031 Sum_probs=52.9
Q ss_pred CeEEEeCCC-Cc-HHHHHHHHhCCCeEEEEeCChHHHHHHHHHh--HHhcCCCCCcceEeeecCCCCCCCCCCccEEEEc
Q 026036 79 RRCIELGSG-TG-ALAIFLRKAMNLDITTSDYNDQEIEDNIAYN--STTNGITPALPHIKHSWGDAFPIPNPDWDLILAS 154 (244)
Q Consensus 79 ~~VLdlG~G-~G-~~~~~~a~~~~~~v~~~D~~~~~l~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~fD~I~~~ 154 (244)
.+|+=+|+| .| .++..+++. +.+|+.++-+.+.+ +..+++ ...... ............ +...+.||+|+..
T Consensus 3 m~I~IiGaGaiG~~~a~~L~~~-G~~V~lv~r~~~~~-~~i~~~~Gl~i~~~-g~~~~~~~~~~~--~~~~~~~D~viv~ 77 (305)
T PRK05708 3 MTWHILGAGSLGSLWACRLARA-GLPVRLILRDRQRL-AAYQQAGGLTLVEQ-GQASLYAIPAET--ADAAEPIHRLLLA 77 (305)
T ss_pred ceEEEECCCHHHHHHHHHHHhC-CCCeEEEEechHHH-HHHhhcCCeEEeeC-CcceeeccCCCC--cccccccCEEEEE
Confidence 478888887 34 445556554 67899999876555 444332 111100 000000111111 1123479988763
Q ss_pred ccccCCcChHHHHHHHHHHHHhcCCCCceEee
Q 026036 155 DILLYVKQYSNLIKSLSVLLKSYKPKDSQVGH 186 (244)
Q Consensus 155 ~~l~~~~~~~~l~~~l~~~~~~lk~gG~~~~~ 186 (244)
... .++..+++.+...+.++..++..
T Consensus 78 -----vK~-~~~~~al~~l~~~l~~~t~vv~l 103 (305)
T PRK05708 78 -----CKA-YDAEPAVASLAHRLAPGAELLLL 103 (305)
T ss_pred -----CCH-HhHHHHHHHHHhhCCCCCEEEEE
Confidence 122 24557888899999888866555
|
|
| >PRK08265 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=80.52 E-value=25 Score=28.41 Aligned_cols=74 Identities=12% Similarity=0.075 Sum_probs=40.2
Q ss_pred cCCeEEEeCCCCcHHHHHHHHhC---CCeEEEEeCChHHHHHHHHHhHHhcCCCCCcceEeeecCCCCCC---------C
Q 026036 77 ERRRCIELGSGTGALAIFLRKAM---NLDITTSDYNDQEIEDNIAYNSTTNGITPALPHIKHSWGDAFPI---------P 144 (244)
Q Consensus 77 ~~~~VLdlG~G~G~~~~~~a~~~---~~~v~~~D~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------~ 144 (244)
+++++|=.|++ |.++..+++.. +.+|+.+|.+++.+.+..+. . ..++..+..|..+.... .
T Consensus 5 ~~k~vlItGas-~gIG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~-~-----~~~~~~~~~Dl~~~~~~~~~~~~~~~~ 77 (261)
T PRK08265 5 AGKVAIVTGGA-TLIGAAVARALVAAGARVAIVDIDADNGAAVAAS-L-----GERARFIATDITDDAAIERAVATVVAR 77 (261)
T ss_pred CCCEEEEECCC-ChHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHH-h-----CCeeEEEEecCCCHHHHHHHHHHHHHH
Confidence 56688877754 44555554443 77999999987644222221 1 11233445555443110 1
Q ss_pred CCCccEEEEcccc
Q 026036 145 NPDWDLILASDIL 157 (244)
Q Consensus 145 ~~~fD~I~~~~~l 157 (244)
.++.|+++.+...
T Consensus 78 ~g~id~lv~~ag~ 90 (261)
T PRK08265 78 FGRVDILVNLACT 90 (261)
T ss_pred hCCCCEEEECCCC
Confidence 2467888876554
|
|
| >cd08242 MDR_like Medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family | Back alignment and domain information |
|---|
Probab=80.14 E-value=32 Score=28.53 Aligned_cols=93 Identities=13% Similarity=0.152 Sum_probs=53.1
Q ss_pred cCcccCCeEEEeCCC-CcHHHHHHHHhCCCeEEEEeCChHHHHHHHHHhHHhcCCCCCcceEeeecCCCCCCCCCCccEE
Q 026036 73 REWIERRRCIELGSG-TGALAIFLRKAMNLDITTSDYNDQEIEDNIAYNSTTNGITPALPHIKHSWGDAFPIPNPDWDLI 151 (244)
Q Consensus 73 ~~~~~~~~VLdlG~G-~G~~~~~~a~~~~~~v~~~D~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fD~I 151 (244)
....++.+||=.|+| .|.....+++..+.+|++++.+++.. +.++. .+.. ....+.+. .....+|+|
T Consensus 151 ~~~~~g~~vlV~g~g~vg~~~~q~a~~~G~~vi~~~~~~~~~-~~~~~----~g~~-----~~~~~~~~--~~~~~~d~v 218 (319)
T cd08242 151 VPITPGDKVAVLGDGKLGLLIAQVLALTGPDVVLVGRHSEKL-ALARR----LGVE-----TVLPDEAE--SEGGGFDVV 218 (319)
T ss_pred cCCCCCCEEEEECCCHHHHHHHHHHHHcCCeEEEEcCCHHHH-HHHHH----cCCc-----EEeCcccc--ccCCCCCEE
Confidence 345577888888753 23333444556688899999887764 54443 1221 01111111 123468988
Q ss_pred EEcccccCCcChHHHHHHHHHHHHhcCCCCceEee
Q 026036 152 LASDILLYVKQYSNLIKSLSVLLKSYKPKDSQVGH 186 (244)
Q Consensus 152 ~~~~~l~~~~~~~~l~~~l~~~~~~lk~gG~~~~~ 186 (244)
+-. . . .. ..+....+.++++|+++..
T Consensus 219 id~--~---g-~~---~~~~~~~~~l~~~g~~v~~ 244 (319)
T cd08242 219 VEA--T---G-SP---SGLELALRLVRPRGTVVLK 244 (319)
T ss_pred EEC--C---C-Ch---HHHHHHHHHhhcCCEEEEE
Confidence 752 2 1 11 3456677888999988763
|
This group contains members identified as related to zinc-dependent alcohol dehydrogenase and other members of the MDR family, including threonine dehydrogenase. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group includes various activities, including the founding alcohol dehydrogenase (ADH), quinone reducta |
Homologous Structure Templates
Structure Templates Detected by BLAST
Original result of BLAST against Protein Data Bank
| ID | Alignment Graph | Length |
Definition |
E-value | |
| Query | 244 | ||||
| 3bzb_A | 281 | Crystal Structure Of Uncharacterized Protein Cmq451 | 3e-05 |
| >pdb|3BZB|A Chain A, Crystal Structure Of Uncharacterized Protein Cmq451c From The Primitive Red Alga Cyanidioschyzon Merolae Length = 281 | Back alignment and structure |
|
Structure Templates Detected by RPS-BLAST
Original result of RPS-BLAST against PDB70 database
| >3bzb_A Uncharacterized protein; RED ALGA, protein structure initiat center for eukaryotic structural genomics, CESG, structural genomics; 2.79A {Cyanidioschyzon merolae} Length = 281 | Back alignment and structure |
|---|
Score = 104 bits (261), Expect = 3e-27
Identities = 40/242 (16%), Positives = 77/242 (31%), Gaps = 32/242 (13%)
Query: 6 FSPSSLFAEEDDVTVDEETMETCNGYVERPHQFPEMELVIREFAFHQLNANFLWPGTFSF 65
L D E Y + + ++ H L + +W G +
Sbjct: 9 LELDGLPGTPPD-FYRERQRSRVERYQSPAGAPLQCSVQVQTTQEHPLWTSHVWSGARAL 67
Query: 66 AEWLMHHREWIERRRCIELGSGTGALAIFLRKAMNLDITTSDYNDQEIEDNIAYNSTTNG 125
A+ L E I + ELG+G G ++I A + +DY D EI +++ N +
Sbjct: 68 ADTLCWQPELIAGKTVCELGAGAGLVSIVAFLAGADQVVATDYPDPEILNSLESNIREHT 127
Query: 126 ITPALPH---------IKHSWGDA-----FPIPNPDWDLILASDILLYVKQYSNLIKSLS 171
+ + WGD+ + ++L +D+L + + + L++S+
Sbjct: 128 ANSCSSETVKRASPKVVPYRWGDSPDSLQRCTGLQRFQVVLLADLLSFHQAHDALLRSVK 187
Query: 172 VLLKSYKPKDSQVGHLTKNEQGEGTEGLPWPAFLMSWRRRIGKEDETIFFTSCENAGLEV 231
+LL + + R E + FF G +
Sbjct: 188 MLLALPANDPT-----------------AVALVTFTHHRPHLAERDLAFFRLVNADGALI 230
Query: 232 KH 233
Sbjct: 231 AE 232
|
| >1dus_A MJ0882; hypothetical protein, methanococcus jannaschii, structural genomics, BSGC structure funded by NIH; 1.80A {Methanocaldococcus jannaschii} SCOP: c.66.1.4 Length = 194 | Back alignment and structure |
|---|
Score = 39.2 bits (92), Expect = 4e-04
Identities = 25/135 (18%), Positives = 50/135 (37%), Gaps = 24/135 (17%)
Query: 31 YVERP---HQFPEMELVIREFAFHQLNANFLWPGTFSFAEW------LMHHREWIERRRC 81
+ E+P +E ++R G FS+ + L+ + +
Sbjct: 1 FSEKPTTKSDVKIVEDILRGKKLKFKTD----SGVFSYGKVDKGTKILVENVVVDKDDDI 56
Query: 82 IELGSGTGALAIFLRKAMNLDITTSDYNDQEIE---DNIAYNSTTNGITPALPHIKHSWG 138
++LG G G + I L T +D N + I+ +NI N+ N I+
Sbjct: 57 LDLGCGYGVIGIALADE-VKSTTMADINRRAIKLAKENIKLNNLDN------YDIRVVHS 109
Query: 139 DAF-PIPNPDWDLIL 152
D + + + ++ I+
Sbjct: 110 DLYENVKDRKYNKII 124
|
| >3dlc_A Putative S-adenosyl-L-methionine-dependent methyltransferase; structural genomics, joint center for structural genomics; HET: MSE SAM; 1.15A {Methanococcus maripaludis} Length = 219 | Back alignment and structure |
|---|
Score = 39.0 bits (91), Expect = 6e-04
Identities = 30/114 (26%), Positives = 48/114 (42%), Gaps = 13/114 (11%)
Query: 52 QLNANFLWPGTFSFAEWLMHHREWIERRRCIELGSGTGALAIFLRKAMNLDITTSDYNDQ 111
+++ P AE +++ I CI++GSG GAL+I L K + I D++
Sbjct: 19 EISKTLFAPIYPIIAENIINRFG-ITAGTCIDIGSGPGALSIALAKQSDFSIRALDFSKH 77
Query: 112 EIE---DNIAYNSTTNGITPALPHIKHSWGDAFPIPNPD--WDLILASDILLYV 160
E NIA + + I GD IP D DLI++ + +
Sbjct: 78 MNEIALKNIADANLNDRIQIVQ-------GDVHNIPIEDNYADLIVSRGSVFFW 124
|
Structure Templates Detected by HHsearch
Original result of HHsearch against PDB70 database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 244 | |||
| 3bzb_A | 281 | Uncharacterized protein; RED ALGA, protein structu | 99.93 | |
| 3bus_A | 273 | REBM, methyltransferase; rebeccamycin synthesis; H | 99.8 | |
| 1nkv_A | 256 | Hypothetical protein YJHP; structural genomics, PS | 99.79 | |
| 3ujc_A | 266 | Phosphoethanolamine N-methyltransferase; parasite; | 99.79 | |
| 3vc1_A | 312 | Geranyl diphosphate 2-C-methyltransferase; rossman | 99.79 | |
| 3f4k_A | 257 | Putative methyltransferase; structural genomics, P | 99.78 | |
| 3hem_A | 302 | Cyclopropane-fatty-acyl-phospholipid synthase 2; p | 99.78 | |
| 4gek_A | 261 | TRNA (CMO5U34)-methyltransferase; structural genom | 99.78 | |
| 3jwg_A | 219 | HEN1, methyltransferase type 12; 1.90A {Clostridiu | 99.78 | |
| 3lpm_A | 259 | Putative methyltransferase; structural genomics, p | 99.77 | |
| 3jwh_A | 217 | HEN1; methyltransferase; HET: SAH; 2.20A {Anabaena | 99.77 | |
| 3kkz_A | 267 | Uncharacterized protein Q5LES9; putative methyltra | 99.77 | |
| 2o57_A | 297 | Putative sarcosine dimethylglycine methyltransfera | 99.77 | |
| 1kpg_A | 287 | CFA synthase;, cyclopropane-fatty-acyl-phospholipi | 99.77 | |
| 1xtp_A | 254 | LMAJ004091AAA; SGPP, structural genomics, PSI, pro | 99.75 | |
| 3dlc_A | 219 | Putative S-adenosyl-L-methionine-dependent methylt | 99.75 | |
| 1vl5_A | 260 | Unknown conserved protein BH2331; putative methylt | 99.75 | |
| 3dh0_A | 219 | SAM dependent methyltransferase; cystal structure, | 99.75 | |
| 3sm3_A | 235 | SAM-dependent methyltransferases; NESG, structural | 99.75 | |
| 3g5l_A | 253 | Putative S-adenosylmethionine dependent methyltran | 99.75 | |
| 4htf_A | 285 | S-adenosylmethionine-dependent methyltransferase; | 99.75 | |
| 3dtn_A | 234 | Putative methyltransferase MM_2633; structural gen | 99.74 | |
| 1xxl_A | 239 | YCGJ protein; structural genomics, protein structu | 99.74 | |
| 2ex4_A | 241 | Adrenal gland protein AD-003; methyltransferase, s | 99.74 | |
| 3e23_A | 211 | Uncharacterized protein RPA2492; alpha-beta protei | 99.73 | |
| 2fk8_A | 318 | Methoxy mycolic acid synthase 4; S-adenosylmethion | 99.73 | |
| 3evz_A | 230 | Methyltransferase; NYSGXRC, NEW YORK SGX research | 99.73 | |
| 3lcc_A | 235 | Putative methyl chloride transferase; halide methy | 99.73 | |
| 3dli_A | 240 | Methyltransferase; PSI-II, NYSGXRC, structural gen | 99.73 | |
| 3e8s_A | 227 | Putative SAM dependent methyltransferase; NP_74470 | 99.73 | |
| 2a14_A | 263 | Indolethylamine N-methyltransferase; SGC,INMT, str | 99.72 | |
| 3ou2_A | 218 | SAM-dependent methyltransferase; O-methyltransfera | 99.72 | |
| 3l8d_A | 242 | Methyltransferase; structural genomics, PSI, nysgr | 99.72 | |
| 3h2b_A | 203 | SAM-dependent methyltransferase; alpha-beta protei | 99.72 | |
| 3g2m_A | 299 | PCZA361.24; SAM-dependent methyltransferase, glyco | 99.72 | |
| 3hm2_A | 178 | Precorrin-6Y C5,15-methyltransferase; alpha-beta-s | 99.72 | |
| 3mgg_A | 276 | Methyltransferase; NYSGXRC, PSI-II, protein struct | 99.71 | |
| 3mti_A | 185 | RRNA methylase; SAM-dependent, PSI, MCSG, structur | 99.71 | |
| 3njr_A | 204 | Precorrin-6Y methylase; methyltransferase, decarbo | 99.71 | |
| 3e05_A | 204 | Precorrin-6Y C5,15-methyltransferase (decarboxyla; | 99.71 | |
| 1pjz_A | 203 | Thiopurine S-methyltransferase; polymorphism, S-ad | 99.71 | |
| 3grz_A | 205 | L11 mtase, ribosomal protein L11 methyltransferase | 99.71 | |
| 1ri5_A | 298 | MRNA capping enzyme; methyltransferase, M7G, messe | 99.71 | |
| 2p7i_A | 250 | Hypothetical protein; putative methyltransferase, | 99.7 | |
| 1y8c_A | 246 | S-adenosylmethionine-dependent methyltransferase; | 99.7 | |
| 3g07_A | 292 | 7SK snRNA methylphosphate capping enzyme; structur | 99.7 | |
| 3pfg_A | 263 | N-methyltransferase; N,N-dimethyltransferase, SAM | 99.7 | |
| 3ocj_A | 305 | Putative exported protein; structural genomics, PS | 99.7 | |
| 1ve3_A | 227 | Hypothetical protein PH0226; dimer, riken structur | 99.7 | |
| 3ege_A | 261 | Putative methyltransferase from antibiotic biosyn | 99.7 | |
| 3hnr_A | 220 | Probable methyltransferase BT9727_4108; structural | 99.69 | |
| 2i62_A | 265 | Nicotinamide N-methyltransferase; structural genom | 99.69 | |
| 3p9n_A | 189 | Possible methyltransferase (methylase); RV2966C, a | 99.69 | |
| 4fsd_A | 383 | Arsenic methyltransferase; rossmann fold; 1.75A {C | 99.69 | |
| 2b3t_A | 276 | Protein methyltransferase HEMK; translation termin | 99.68 | |
| 3thr_A | 293 | Glycine N-methyltransferase; GNMT, folate, methylt | 99.68 | |
| 2gb4_A | 252 | Thiopurine S-methyltransferase; 18204406, thiopuri | 99.68 | |
| 3bkw_A | 243 | MLL3908 protein, S-adenosylmethionine dependent me | 99.68 | |
| 2xvm_A | 199 | Tellurite resistance protein TEHB; antibiotic resi | 99.67 | |
| 3i53_A | 332 | O-methyltransferase; CO-complex, rossmann-like fol | 99.67 | |
| 3ofk_A | 216 | Nodulation protein S; NODS, N-methyltransferase, S | 99.67 | |
| 3i9f_A | 170 | Putative type 11 methyltransferase; structural gen | 99.67 | |
| 2vdw_A | 302 | Vaccinia virus capping enzyme D1 subunit; nucleoti | 99.67 | |
| 1dus_A | 194 | MJ0882; hypothetical protein, methanococcus jannas | 99.67 | |
| 3iv6_A | 261 | Putative Zn-dependent alcohol dehydrogenase; alpha | 99.67 | |
| 3d2l_A | 243 | SAM-dependent methyltransferase; ZP_00538691.1, st | 99.67 | |
| 3bxo_A | 239 | N,N-dimethyltransferase; desosamine, sugar, carboh | 99.67 | |
| 2nxc_A | 254 | L11 mtase, ribosomal protein L11 methyltransferase | 99.67 | |
| 3gwz_A | 369 | MMCR; methyltransferase, mitomycin, S-adenosyl met | 99.67 | |
| 2yxd_A | 183 | Probable cobalt-precorrin-6Y C(15)-methyltransfer | 99.66 | |
| 2p8j_A | 209 | S-adenosylmethionine-dependent methyltransferase; | 99.66 | |
| 3bkx_A | 275 | SAM-dependent methyltransferase; YP_807781.1, cycl | 99.66 | |
| 3q87_B | 170 | N6 adenine specific DNA methylase; SAM-methyltrans | 99.66 | |
| 3kr9_A | 225 | SAM-dependent methyltransferase; class I rossmann- | 99.65 | |
| 1wzn_A | 252 | SAM-dependent methyltransferase; structural genomi | 99.65 | |
| 2yqz_A | 263 | Hypothetical protein TTHA0223; RNA methyltransfera | 99.65 | |
| 4hg2_A | 257 | Methyltransferase type 11; structural genomics, PS | 99.65 | |
| 2kw5_A | 202 | SLR1183 protein; structural genomics, northeast st | 99.65 | |
| 3ccf_A | 279 | Cyclopropane-fatty-acyl-phospholipid synthase; YP_ | 99.65 | |
| 2esr_A | 177 | Methyltransferase; structural genomics, hypothetic | 99.65 | |
| 3m70_A | 286 | Tellurite resistance protein TEHB homolog; structu | 99.65 | |
| 2p35_A | 259 | Trans-aconitate 2-methyltransferase; SAM dependent | 99.65 | |
| 2frn_A | 278 | Hypothetical protein PH0793; structural genomics, | 99.64 | |
| 1l3i_A | 192 | Precorrin-6Y methyltransferase/putative decarboxyl | 99.64 | |
| 2g72_A | 289 | Phenylethanolamine N-methyltransferase; HET: SAM F | 99.64 | |
| 2ozv_A | 260 | Hypothetical protein ATU0636; structural genomics, | 99.64 | |
| 3dmg_A | 381 | Probable ribosomal RNA small subunit methyltransf; | 99.64 | |
| 2ift_A | 201 | Putative methylase HI0767; NESG, Y767_haein, struc | 99.64 | |
| 3orh_A | 236 | Guanidinoacetate N-methyltransferase; structura ge | 99.64 | |
| 3cgg_A | 195 | SAM-dependent methyltransferase; NP_600671.1, meth | 99.64 | |
| 3lec_A | 230 | NADB-rossmann superfamily protein; PSI, MCSG, stru | 99.63 | |
| 4dcm_A | 375 | Ribosomal RNA large subunit methyltransferase G; 2 | 99.63 | |
| 3gu3_A | 284 | Methyltransferase; alpha-beta protein, structural | 99.63 | |
| 3dp7_A | 363 | SAM-dependent methyltransferase; structural genomi | 99.63 | |
| 3m33_A | 226 | Uncharacterized protein; structural genomics, PSI- | 99.63 | |
| 3q7e_A | 349 | Protein arginine N-methyltransferase 1; HET: SAH; | 99.63 | |
| 3hp7_A | 291 | Hemolysin, putative; structural genomics, APC64019 | 99.63 | |
| 2fpo_A | 202 | Methylase YHHF; structural genomics, putative meth | 99.63 | |
| 2fyt_A | 340 | Protein arginine N-methyltransferase 3; structural | 99.62 | |
| 3cc8_A | 230 | Putative methyltransferase; structural genomics, j | 99.62 | |
| 1yzh_A | 214 | TRNA (guanine-N(7)-)-methyltransferase; alpha-beta | 99.62 | |
| 4e2x_A | 416 | TCAB9; kijanose, tetronitrose, tetradeoxy sugar, s | 99.62 | |
| 2r3s_A | 335 | Uncharacterized protein; methyltransferase domain, | 99.62 | |
| 3mcz_A | 352 | O-methyltransferase; adomet_mtases, S-adenosylmeth | 99.62 | |
| 3g89_A | 249 | Ribosomal RNA small subunit methyltransferase G; 1 | 99.62 | |
| 1qzz_A | 374 | RDMB, aclacinomycin-10-hydroxylase; anthracycline, | 99.62 | |
| 1x19_A | 359 | CRTF-related protein; methyltransferase, bacterioc | 99.61 | |
| 3bgv_A | 313 | MRNA CAP guanine-N7 methyltransferase; alternative | 99.61 | |
| 2h00_A | 254 | Methyltransferase 10 domain containing protein; st | 99.61 | |
| 2ip2_A | 334 | Probable phenazine-specific methyltransferase; pyo | 99.61 | |
| 3eey_A | 197 | Putative rRNA methylase; rRNA methylation, S-adeno | 99.61 | |
| 3gnl_A | 244 | Uncharacterized protein, DUF633, LMOF2365_1472; st | 99.61 | |
| 1tw3_A | 360 | COMT, carminomycin 4-O-methyltransferase; anthracy | 99.61 | |
| 3r0q_C | 376 | Probable protein arginine N-methyltransferase 4.2; | 99.61 | |
| 2fhp_A | 187 | Methylase, putative; alpha-beta-alpha sandwich, st | 99.6 | |
| 1xdz_A | 240 | Methyltransferase GIDB; MCSG, protein structure in | 99.6 | |
| 1zx0_A | 236 | Guanidinoacetate N-methyltransferase; structural g | 99.6 | |
| 2aot_A | 292 | HMT, histamine N-methyltransferase; classic methyl | 99.6 | |
| 4dzr_A | 215 | Protein-(glutamine-N5) methyltransferase, release | 99.6 | |
| 3lst_A | 348 | CALO1 methyltransferase; calicheamicin, enediyne, | 99.59 | |
| 3fzg_A | 200 | 16S rRNA methylase; methyltransferase, plasmid, tr | 99.59 | |
| 1nv8_A | 284 | HEMK protein; class I adoMet-dependent methyltrans | 99.59 | |
| 2pjd_A | 343 | Ribosomal RNA small subunit methyltransferase C; g | 99.59 | |
| 2igt_A | 332 | SAM dependent methyltransferase; alpha-beta sandwi | 99.59 | |
| 3fpf_A | 298 | Mtnas, putative uncharacterized protein; thermonic | 99.59 | |
| 3opn_A | 232 | Putative hemolysin; structural genomics, PSI-2, pr | 99.58 | |
| 3g5t_A | 299 | Trans-aconitate 3-methyltransferase; structural ge | 99.58 | |
| 1g6q_1 | 328 | HnRNP arginine N-methyltransferase; SAM-binding do | 99.58 | |
| 4hc4_A | 376 | Protein arginine N-methyltransferase 6; HRMT1L6, S | 99.58 | |
| 4df3_A | 233 | Fibrillarin-like rRNA/TRNA 2'-O-methyltransferase; | 99.58 | |
| 1jsx_A | 207 | Glucose-inhibited division protein B; methyltransf | 99.57 | |
| 1fbn_A | 230 | MJ fibrillarin homologue; MJ proteins, ribosomal R | 99.56 | |
| 1o9g_A | 250 | RRNA methyltransferase; antibiotic resistance, Se- | 99.56 | |
| 2pxx_A | 215 | Uncharacterized protein MGC2408; structural genomi | 99.56 | |
| 2y1w_A | 348 | Histone-arginine methyltransferase CARM1; histone | 99.55 | |
| 3htx_A | 950 | HEN1; HEN1, small RNA methyltransferase, protein-R | 99.55 | |
| 3mb5_A | 255 | SAM-dependent methyltransferase; RNA methyltransfe | 99.55 | |
| 3u81_A | 221 | Catechol O-methyltransferase; neurotransmitter deg | 99.55 | |
| 3p2e_A | 225 | 16S rRNA methylase; methyltransferase, transferase | 99.55 | |
| 1vlm_A | 219 | SAM-dependent methyltransferase; possible histamin | 99.55 | |
| 2fca_A | 213 | TRNA (guanine-N(7)-)-methyltransferase; 2.10A {Bac | 99.54 | |
| 3ntv_A | 232 | MW1564 protein; rossmann fold, putative methyltran | 99.54 | |
| 3k6r_A | 278 | Putative transferase PH0793; structural genomics, | 99.54 | |
| 1ws6_A | 171 | Methyltransferase; structural genomics, riken stru | 99.54 | |
| 2pwy_A | 258 | TRNA (adenine-N(1)-)-methyltransferase; mtase, ado | 99.54 | |
| 1yb2_A | 275 | Hypothetical protein TA0852; structural genomics, | 99.54 | |
| 3dr5_A | 221 | Putative O-methyltransferase; Q8NRD3, CGL1119, PF0 | 99.54 | |
| 3ggd_A | 245 | SAM-dependent methyltransferase; YP_325210.1, stru | 99.53 | |
| 1wy7_A | 207 | Hypothetical protein PH1948; seven-stranded beta s | 99.53 | |
| 3id6_C | 232 | Fibrillarin-like rRNA/TRNA 2'-O-methyltransferase; | 99.53 | |
| 3b3j_A | 480 | Histone-arginine methyltransferase CARM1; protein | 99.53 | |
| 3lbf_A | 210 | Protein-L-isoaspartate O-methyltransferase; modifi | 99.53 | |
| 2gs9_A | 211 | Hypothetical protein TT1324; methyl transferase, s | 99.53 | |
| 3uwp_A | 438 | Histone-lysine N-methyltransferase, H3 lysine-79; | 99.53 | |
| 4a6d_A | 353 | Hydroxyindole O-methyltransferase; melatonin, circ | 99.52 | |
| 3tfw_A | 248 | Putative O-methyltransferase; PSI-biology, nysgrc, | 99.52 | |
| 2ipx_A | 233 | RRNA 2'-O-methyltransferase fibrillarin; FBL, stru | 99.52 | |
| 1o54_A | 277 | SAM-dependent O-methyltransferase; TM0748, structu | 99.52 | |
| 3dxy_A | 218 | TRNA (guanine-N(7)-)-methyltransferase; rossmann f | 99.51 | |
| 1nt2_A | 210 | Fibrillarin-like PRE-rRNA processing protein; adeM | 99.51 | |
| 2avn_A | 260 | Ubiquinone/menaquinone biosynthesis methyltransfe | 99.5 | |
| 2zfu_A | 215 | Nucleomethylin, cerebral protein 1; nucleolar prot | 99.5 | |
| 1u2z_A | 433 | Histone-lysine N-methyltransferase, H3 lysine-79 s | 99.5 | |
| 2gpy_A | 233 | O-methyltransferase; structural genomics, PSI, pro | 99.5 | |
| 3mq2_A | 218 | 16S rRNA methyltransferase; methyltranferase, ribo | 99.49 | |
| 3gdh_A | 241 | Trimethylguanosine synthase homolog; M7G, CAP, dim | 99.49 | |
| 2b78_A | 385 | Hypothetical protein SMU.776; structure genomics, | 99.48 | |
| 2yxe_A | 215 | Protein-L-isoaspartate O-methyltransferase; rossma | 99.48 | |
| 3duw_A | 223 | OMT, O-methyltransferase, putative; alternating of | 99.48 | |
| 3v97_A | 703 | Ribosomal RNA large subunit methyltransferase L; Y | 99.47 | |
| 1ne2_A | 200 | Hypothetical protein TA1320; structural genomics, | 99.47 | |
| 1vbf_A | 231 | 231AA long hypothetical protein-L-isoaspartate O- | 99.47 | |
| 3tr6_A | 225 | O-methyltransferase; cellular processes; HET: SAH; | 99.47 | |
| 3tma_A | 354 | Methyltransferase; thump domain; 2.05A {Thermus th | 99.46 | |
| 3reo_A | 368 | (ISO)eugenol O-methyltransferase; directed evoluti | 99.46 | |
| 2yvl_A | 248 | TRMI protein, hypothetical protein; tRNA, methyltr | 99.46 | |
| 4azs_A | 569 | Methyltransferase WBDD; kinase; HET: AMP SAM; 2.15 | 99.46 | |
| 1dl5_A | 317 | Protein-L-isoaspartate O-methyltransferase; isoasp | 99.46 | |
| 1sui_A | 247 | Caffeoyl-COA O-methyltransferase; rossmann fold, p | 99.45 | |
| 1g8a_A | 227 | Fibrillarin-like PRE-rRNA processing protein; rRNA | 99.44 | |
| 2qm3_A | 373 | Predicted methyltransferase; putative methyltransf | 99.44 | |
| 3p9c_A | 364 | Caffeic acid O-methyltransferase; S-adenosylmethio | 99.44 | |
| 3c3p_A | 210 | Methyltransferase; NP_951602.1, structural genomic | 99.44 | |
| 1af7_A | 274 | Chemotaxis receptor methyltransferase CHER; chemot | 99.44 | |
| 4dmg_A | 393 | Putative uncharacterized protein TTHA1493; rRNA, m | 99.43 | |
| 1ixk_A | 315 | Methyltransferase; open beta sheet; 1.90A {Pyrococ | 99.43 | |
| 3tm4_A | 373 | TRNA (guanine N2-)-methyltransferase TRM14; rossma | 99.43 | |
| 3r3h_A | 242 | O-methyltransferase, SAM-dependent; structural gen | 99.43 | |
| 1jg1_A | 235 | PIMT;, protein-L-isoaspartate O-methyltransferase; | 99.42 | |
| 1fp1_D | 372 | Isoliquiritigenin 2'-O-methyltransferase; protein- | 99.41 | |
| 3bwc_A | 304 | Spermidine synthase; SAM, SGPP, structura genomics | 99.41 | |
| 2hnk_A | 239 | SAM-dependent O-methyltransferase; modified rossma | 99.41 | |
| 3a27_A | 272 | TYW2, uncharacterized protein MJ1557; wybutosine m | 99.41 | |
| 1i9g_A | 280 | Hypothetical protein RV2118C; mtase, adoMet, cryst | 99.4 | |
| 3ckk_A | 235 | TRNA (guanine-N(7)-)-methyltransferase; mettl1, S- | 99.4 | |
| 3c0k_A | 396 | UPF0064 protein YCCW; PUA domain, adoMet dependent | 99.39 | |
| 2yx1_A | 336 | Hypothetical protein MJ0883; methyl transferase, t | 99.39 | |
| 3lcv_B | 281 | Sisomicin-gentamicin resistance methylase SGM; ant | 99.37 | |
| 1uwv_A | 433 | 23S rRNA (uracil-5-)-methyltransferase RUMA; RNA m | 99.37 | |
| 2qe6_A | 274 | Uncharacterized protein TFU_2867; putative methylt | 99.37 | |
| 1fp2_A | 352 | Isoflavone O-methyltransferase; protein-product co | 99.37 | |
| 1p91_A | 269 | Ribosomal RNA large subunit methyltransferase A; R | 99.37 | |
| 2vdv_E | 246 | TRNA (guanine-N(7)-)-methyltransferase; S-adenosyl | 99.36 | |
| 3adn_A | 294 | Spermidine synthase; aminopropyltransferase, polya | 99.36 | |
| 3c3y_A | 237 | Pfomt, O-methyltransferase; plant secondary metabo | 99.36 | |
| 2avd_A | 229 | Catechol-O-methyltransferase; structural genomics, | 99.36 | |
| 3ajd_A | 274 | Putative methyltransferase MJ0026; tRNA, M5C, ross | 99.35 | |
| 1wxx_A | 382 | TT1595, hypothetical protein TTHA1280; thermus the | 99.35 | |
| 2jjq_A | 425 | Uncharacterized RNA methyltransferase pyrab10780; | 99.35 | |
| 2pbf_A | 227 | Protein-L-isoaspartate O-methyltransferase beta-A | 99.35 | |
| 2as0_A | 396 | Hypothetical protein PH1915; RNA methyltransferase | 99.35 | |
| 1i1n_A | 226 | Protein-L-isoaspartate O-methyltransferase; S-aden | 99.35 | |
| 2b25_A | 336 | Hypothetical protein; structural genomics, methyl | 99.34 | |
| 3cbg_A | 232 | O-methyltransferase; cyanobacterium; HET: SAH FER | 99.33 | |
| 2bm8_A | 236 | Cephalosporin hydroxylase CMCI; cephamycin biosynt | 99.32 | |
| 3m6w_A | 464 | RRNA methylase; rRNA methyltransferase, 5-methylcy | 99.32 | |
| 3frh_A | 253 | 16S rRNA methylase; methyltransferase domain, heli | 99.32 | |
| 1ej0_A | 180 | FTSJ; methyltransferase, adoMet, adenosyl methioni | 99.32 | |
| 2plw_A | 201 | Ribosomal RNA methyltransferase, putative; malaria | 99.32 | |
| 3m4x_A | 456 | NOL1/NOP2/SUN family protein; mtase domain, PUA do | 99.32 | |
| 1zq9_A | 285 | Probable dimethyladenosine transferase; SGC, struc | 99.31 | |
| 1r18_A | 227 | Protein-L-isoaspartate(D-aspartate)-O-methyltrans; | 99.31 | |
| 2yxl_A | 450 | PH0851 protein, 450AA long hypothetical FMU protei | 99.31 | |
| 1zg3_A | 358 | Isoflavanone 4'-O-methyltransferase; rossman fold, | 99.27 | |
| 3dou_A | 191 | Ribosomal RNA large subunit methyltransferase J; c | 99.26 | |
| 2pt6_A | 321 | Spermidine synthase; transferase, structural genom | 99.26 | |
| 1iy9_A | 275 | Spermidine synthase; rossmann fold, structural gen | 99.25 | |
| 3ldu_A | 385 | Putative methylase; structural genomics, PSI-2, pr | 99.25 | |
| 2nyu_A | 196 | Putative ribosomal RNA methyltransferase 2; SAM, s | 99.25 | |
| 2f8l_A | 344 | Hypothetical protein LMO1582; structural genomics, | 99.25 | |
| 1inl_A | 296 | Spermidine synthase; beta-barrel, rossman fold, st | 99.25 | |
| 2h1r_A | 299 | Dimethyladenosine transferase, putative; SGC toron | 99.25 | |
| 1mjf_A | 281 | Spermidine synthase; spermidine synthetase, struct | 99.24 | |
| 3k0b_A | 393 | Predicted N6-adenine-specific DNA methylase; methy | 99.24 | |
| 2p41_A | 305 | Type II methyltransferase; vizier, viral enzymes i | 99.22 | |
| 3ldg_A | 384 | Putative uncharacterized protein SMU.472; YPSC, me | 99.22 | |
| 2o07_A | 304 | Spermidine synthase; structural genomics, structur | 99.22 | |
| 2ld4_A | 176 | Anamorsin; methyltransferase-like fold, alpha/beta | 99.22 | |
| 2b2c_A | 314 | Spermidine synthase; beta-alpha, transferase; 2.50 | 99.22 | |
| 2frx_A | 479 | Hypothetical protein YEBU; rossmann-type S-adenosy | 99.22 | |
| 2dul_A | 378 | N(2),N(2)-dimethylguanosine tRNA methyltransferas; | 99.21 | |
| 2oxt_A | 265 | Nucleoside-2'-O-methyltransferase; flavivirus, vir | 99.21 | |
| 1uir_A | 314 | Polyamine aminopropyltransferase; spermidien synth | 99.21 | |
| 3gjy_A | 317 | Spermidine synthase; APC62791, structural genomics | 99.2 | |
| 3bt7_A | 369 | TRNA (uracil-5-)-methyltransferase; methyluridine, | 99.2 | |
| 1sqg_A | 429 | SUN protein, FMU protein; rossmann-fold, mixed bet | 99.2 | |
| 2wa2_A | 276 | Non-structural protein 5; transferase, S-adenosyl- | 99.2 | |
| 1xj5_A | 334 | Spermidine synthase 1; structural genomics, protei | 99.2 | |
| 2i7c_A | 283 | Spermidine synthase; transferase, structural genom | 99.19 | |
| 2okc_A | 445 | Type I restriction enzyme stysji M protein; NP_813 | 99.18 | |
| 3axs_A | 392 | Probable N(2),N(2)-dimethylguanosine tRNA methylt | 99.15 | |
| 2ih2_A | 421 | Modification methylase TAQI; DNA, DNA methyltransf | 99.12 | |
| 3v97_A | 703 | Ribosomal RNA large subunit methyltransferase L; Y | 99.09 | |
| 2xyq_A | 290 | Putative 2'-O-methyl transferase; transferase-vira | 99.06 | |
| 3giw_A | 277 | Protein of unknown function DUF574; rossmann-fold | 99.06 | |
| 1qam_A | 244 | ERMC' methyltransferase; rRNA methyltransferase ER | 99.04 | |
| 2cmg_A | 262 | Spermidine synthase; transferase, putrescine amino | 99.04 | |
| 1yub_A | 245 | Ermam, rRNA methyltransferase; MLS antibiotics; NM | 99.03 | |
| 3sso_A | 419 | Methyltransferase; macrolide, natural product, ros | 99.02 | |
| 2ar0_A | 541 | M.ecoki, type I restriction enzyme ecoki M protein | 98.98 | |
| 3khk_A | 544 | Type I restriction-modification system methylation | 98.97 | |
| 2r6z_A | 258 | UPF0341 protein in RSP 3' region; alpha-beta prote | 98.97 | |
| 3gru_A | 295 | Dimethyladenosine transferase; rossman fold, ribos | 98.94 | |
| 3s1s_A | 878 | Restriction endonuclease bpusi; PD--(D/E)XK cataly | 98.94 | |
| 3ll7_A | 410 | Putative methyltransferase; methytransferase, stru | 98.92 | |
| 3fut_A | 271 | Dimethyladenosine transferase; methyltransferase, | 98.92 | |
| 2b9e_A | 309 | NOL1/NOP2/SUN domain family, member 5 isoform 2; m | 98.92 | |
| 3lkd_A | 542 | Type I restriction-modification system methyltrans | 98.86 | |
| 3tqs_A | 255 | Ribosomal RNA small subunit methyltransferase A; p | 98.83 | |
| 1m6y_A | 301 | S-adenosyl-methyltransferase MRAW; SAM-dependent m | 98.77 | |
| 2qfm_A | 364 | Spermine synthase; spermidine aminopropyltransfera | 98.75 | |
| 4gqb_A | 637 | Protein arginine N-methyltransferase 5; TIM barrel | 98.73 | |
| 2oyr_A | 258 | UPF0341 protein YHIQ; alpha-beta protein, structur | 98.73 | |
| 3cvo_A | 202 | Methyltransferase-like protein of unknown functio; | 98.71 | |
| 2k4m_A | 153 | TR8_protein, UPF0146 protein MTH_1000; alpha+beta, | 98.68 | |
| 2qy6_A | 257 | UPF0209 protein YFCK; structural genomics, unknown | 98.67 | |
| 3ftd_A | 249 | Dimethyladenosine transferase; KSGA, rossmann-like | 98.66 | |
| 3evf_A | 277 | RNA-directed RNA polymerase NS5; NS5 methyltransfe | 98.65 | |
| 3b5i_A | 374 | S-adenosyl-L-methionine:salicylic acid carboxyl me | 98.55 | |
| 3uzu_A | 279 | Ribosomal RNA small subunit methyltransferase A; s | 98.55 | |
| 1qyr_A | 252 | KSGA, high level kasugamycin resistance protein, S | 98.54 | |
| 3ua3_A | 745 | Protein arginine N-methyltransferase 5; TIM-barrel | 98.48 | |
| 3ufb_A | 530 | Type I restriction-modification system methyltran | 98.43 | |
| 3gcz_A | 282 | Polyprotein; flavivirus, RNA capping, methyltransf | 98.33 | |
| 4fzv_A | 359 | Putative methyltransferase NSUN4; mterf fold, meth | 98.29 | |
| 3eld_A | 300 | Methyltransferase; flavivirus, RNA capping, guanyl | 98.28 | |
| 2efj_A | 384 | 3,7-dimethylxanthine methyltransferase; SAM-depend | 98.28 | |
| 3o4f_A | 294 | Spermidine synthase; aminopropyltransferase, polya | 98.25 | |
| 2px2_A | 269 | Genome polyprotein [contains: capsid protein C (co | 98.04 | |
| 2zig_A | 297 | TTHA0409, putative modification methylase; methylt | 98.01 | |
| 2wk1_A | 282 | NOVP; transferase, O-methyltransferase, novobiocin | 97.97 | |
| 1m6e_X | 359 | S-adenosyl-L-methionnine:salicylic acid carboxyl m | 97.96 | |
| 3lkz_A | 321 | Non-structural protein 5; flavivirus, methyltransf | 97.87 | |
| 2oo3_A | 283 | Protein involved in catabolism of external DNA; st | 97.78 | |
| 4auk_A | 375 | Ribosomal RNA large subunit methyltransferase M; Y | 97.78 | |
| 3p8z_A | 267 | Mtase, non-structural protein 5; methyltransferase | 97.71 | |
| 3c6k_A | 381 | Spermine synthase; spermidine aminopropyltransfera | 97.69 | |
| 1g60_A | 260 | Adenine-specific methyltransferase MBOIIA; structu | 97.68 | |
| 2vz8_A | 2512 | Fatty acid synthase; transferase, phosphopantethei | 97.64 | |
| 1wg8_A | 285 | Predicted S-adenosylmethionine-dependent methyltra | 97.38 | |
| 3vyw_A | 308 | MNMC2; tRNA wobble uridine, modification enzyme, g | 97.31 | |
| 3g7u_A | 376 | Cytosine-specific methyltransferase; DNA-binding, | 96.87 | |
| 4dcm_A | 375 | Ribosomal RNA large subunit methyltransferase G; 2 | 96.76 | |
| 3r24_A | 344 | NSP16, 2'-O-methyl transferase; methyltransferase, | 96.68 | |
| 2c7p_A | 327 | Modification methylase HHAI; DNA methyltransferase | 96.64 | |
| 3s2e_A | 340 | Zinc-containing alcohol dehydrogenase superfamily; | 96.61 | |
| 1i4w_A | 353 | Mitochondrial replication protein MTF1; mitochondr | 96.52 | |
| 4ej6_A | 370 | Putative zinc-binding dehydrogenase; structural ge | 96.34 | |
| 3qv2_A | 327 | 5-cytosine DNA methyltransferase; DNMT2, ehmeth; H | 96.3 | |
| 3ubt_Y | 331 | Modification methylase HAEIII; protein-DNA complex | 96.28 | |
| 2py6_A | 409 | Methyltransferase FKBM; YP_546752.1, structural ge | 96.26 | |
| 3two_A | 348 | Mannitol dehydrogenase; cinnamyl-alcohol dehydroge | 96.14 | |
| 1f8f_A | 371 | Benzyl alcohol dehydrogenase; rossmann fold, oxido | 96.09 | |
| 1pl8_A | 356 | Human sorbitol dehydrogenase; NAD, oxidoreductase; | 96.06 | |
| 1kol_A | 398 | Formaldehyde dehydrogenase; oxidoreductase; HET: N | 95.97 | |
| 1pqw_A | 198 | Polyketide synthase; rossmann fold, dimer, structu | 95.92 | |
| 1uuf_A | 369 | YAHK, zinc-type alcohol dehydrogenase-like protein | 95.91 | |
| 3m6i_A | 363 | L-arabinitol 4-dehydrogenase; medium chain dehydro | 95.78 | |
| 1e3j_A | 352 | NADP(H)-dependent ketose reductase; oxidoreductase | 95.74 | |
| 2j3h_A | 345 | NADP-dependent oxidoreductase P1; double bond redu | 95.65 | |
| 1v3u_A | 333 | Leukotriene B4 12- hydroxydehydrogenase/prostaglan | 95.61 | |
| 3fpc_A | 352 | NADP-dependent alcohol dehydrogenase; oxydoreducta | 95.51 | |
| 4dvj_A | 363 | Putative zinc-dependent alcohol dehydrogenase Pro; | 95.49 | |
| 4b7c_A | 336 | Probable oxidoreductase; NADP cofactor, rossmann f | 95.45 | |
| 3tka_A | 347 | Ribosomal RNA small subunit methyltransferase H; H | 95.44 | |
| 1boo_A | 323 | Protein (N-4 cytosine-specific methyltransferase P | 95.38 | |
| 1g55_A | 343 | DNA cytosine methyltransferase DNMT2; human DNA me | 95.37 | |
| 2h6e_A | 344 | ADH-4, D-arabinose 1-dehydrogenase; rossman fold, | 95.28 | |
| 3uog_A | 363 | Alcohol dehydrogenase; structural genomics, protei | 95.21 | |
| 1eg2_A | 319 | Modification methylase RSRI; rossmann fold, exocyc | 95.2 | |
| 2hcy_A | 347 | Alcohol dehydrogenase 1; tetramer of asymmetric di | 95.2 | |
| 3ps9_A | 676 | TRNA 5-methylaminomethyl-2-thiouridine biosynthes | 95.19 | |
| 3gms_A | 340 | Putative NADPH:quinone reductase; structural genom | 95.17 | |
| 1rjw_A | 339 | ADH-HT, alcohol dehydrogenase; oxidoreductase, NAD | 95.11 | |
| 1zkd_A | 387 | DUF185; NESG, RPR58, structural genomics, PSI, pro | 95.04 | |
| 1jvb_A | 347 | NAD(H)-dependent alcohol dehydrogenase; archaeon, | 94.95 | |
| 3goh_A | 315 | Alcohol dehydrogenase, zinc-containing; NP_718042. | 94.83 | |
| 3pvc_A | 689 | TRNA 5-methylaminomethyl-2-thiouridine biosynthes | 94.81 | |
| 3qwb_A | 334 | Probable quinone oxidoreductase; rossmann fold, qu | 94.73 | |
| 1cdo_A | 374 | Alcohol dehydrogenase; oxidoreductase, oxidoreduct | 94.67 | |
| 2d8a_A | 348 | PH0655, probable L-threonine 3-dehydrogenase; pyro | 94.56 | |
| 4f3n_A | 432 | Uncharacterized ACR, COG1565 superfamily; structur | 94.54 | |
| 2c0c_A | 362 | Zinc binding alcohol dehydrogenase, domain contain | 94.49 | |
| 1rjd_A | 334 | PPM1P, carboxy methyl transferase for protein phos | 94.42 | |
| 3nx4_A | 324 | Putative oxidoreductase; csgid, structural genomic | 94.41 | |
| 2jhf_A | 374 | Alcohol dehydrogenase E chain; oxidoreductase, met | 94.39 | |
| 4dup_A | 353 | Quinone oxidoreductase; PSI-biology, structural ge | 94.38 | |
| 1p0f_A | 373 | NADP-dependent alcohol dehydrogenase; ADH topology | 94.38 | |
| 2fzw_A | 373 | Alcohol dehydrogenase class III CHI chain; S-nitro | 94.34 | |
| 3jyn_A | 325 | Quinone oxidoreductase; rossmann fold, protein-NAD | 94.25 | |
| 1e3i_A | 376 | Alcohol dehydrogenase, class II; HET: NAD; 2.08A { | 94.25 | |
| 4eye_A | 342 | Probable oxidoreductase; structural genomics, niai | 94.21 | |
| 1yb5_A | 351 | Quinone oxidoreductase; medium-chain dehydrogenase | 94.17 | |
| 3ip1_A | 404 | Alcohol dehydrogenase, zinc-containing; structural | 94.16 | |
| 3uko_A | 378 | Alcohol dehydrogenase class-3; alcohol dehydrogena | 94.1 | |
| 2dq4_A | 343 | L-threonine 3-dehydrogenase; NAD-dependent, oxidor | 94.06 | |
| 1qor_A | 327 | Quinone oxidoreductase; HET: NAP; 2.20A {Escherich | 94.03 | |
| 2j8z_A | 354 | Quinone oxidoreductase; medium-chain dehydrogenase | 94.02 | |
| 1iz0_A | 302 | Quinone oxidoreductase; APO-enzyme, riken structur | 93.88 | |
| 1xa0_A | 328 | Putative NADPH dependent oxidoreductases; structur | 93.79 | |
| 1wly_A | 333 | CAAR, 2-haloacrylate reductase; NADPH-dependent ox | 93.47 | |
| 1tt7_A | 330 | YHFP; alcohol dehydrogenase, Zn-dependent, NAD, st | 93.08 | |
| 3fbg_A | 346 | Putative arginate lyase; structural genomics, unkn | 93.07 | |
| 3tqh_A | 321 | Quinone oxidoreductase; HET: NDP; 2.44A {Coxiella | 92.79 | |
| 2dph_A | 398 | Formaldehyde dismutase; dismutation of aldehydes, | 92.79 | |
| 4a0s_A | 447 | Octenoyl-COA reductase/carboxylase; oxidoreductase | 92.73 | |
| 2zb4_A | 357 | Prostaglandin reductase 2; rossmann fold, alternat | 92.66 | |
| 2qrv_A | 295 | DNA (cytosine-5)-methyltransferase 3A; DNA methylt | 92.48 | |
| 3gaz_A | 343 | Alcohol dehydrogenase superfamily protein; oxidore | 92.4 | |
| 4eez_A | 348 | Alcohol dehydrogenase 1; site-saturation mutagenes | 92.24 | |
| 2b5w_A | 357 | Glucose dehydrogenase; nucleotide binding motif, o | 92.19 | |
| 3krt_A | 456 | Crotonyl COA reductase; structural genomics, prote | 92.02 | |
| 4h0n_A | 333 | DNMT2; SAH binding, transferase; HET: SAH; 2.71A { | 91.92 | |
| 4a2c_A | 346 | Galactitol-1-phosphate 5-dehydrogenase; oxidoreduc | 91.06 | |
| 3tos_A | 257 | CALS11; methyltransferase, calicheamicin, structur | 90.59 | |
| 3me5_A | 482 | Cytosine-specific methyltransferase; structural ge | 89.73 | |
| 1boo_A | 323 | Protein (N-4 cytosine-specific methyltransferase P | 89.66 | |
| 2zig_A | 297 | TTHA0409, putative modification methylase; methylt | 89.6 | |
| 1zsy_A | 357 | Mitochondrial 2-enoyl thioester reductase; medium- | 89.5 | |
| 1piw_A | 360 | Hypothetical zinc-type alcohol dehydrogenase- like | 88.09 | |
| 1gu7_A | 364 | Enoyl-[acyl-carrier-protein] reductase [NADPH, B-s | 87.47 | |
| 2uyo_A | 310 | Hypothetical protein ML2640; putative methyltransf | 87.43 | |
| 2eih_A | 343 | Alcohol dehydrogenase; zinc ION binding protein, s | 86.95 | |
| 2km1_A | 136 | Protein DRE2; yeast, antiapoptotic, protein bindin | 86.94 | |
| 3pi7_A | 349 | NADH oxidoreductase; groes-like fold, NAD(P)-bindi | 86.75 | |
| 1vj0_A | 380 | Alcohol dehydrogenase, zinc-containing; TM0436, st | 86.37 | |
| 3jv7_A | 345 | ADH-A; dehydrogenase, nucleotide binding, rossmann | 86.08 | |
| 4dkj_A | 403 | Cytosine-specific methyltransferase; CG-specificit | 85.52 | |
| 1g60_A | 260 | Adenine-specific methyltransferase MBOIIA; structu | 85.51 | |
| 1h2b_A | 359 | Alcohol dehydrogenase; oxidoreductase, archaea, hy | 85.4 | |
| 3dmg_A | 381 | Probable ribosomal RNA small subunit methyltransf; | 84.71 | |
| 2gdz_A | 267 | NAD+-dependent 15-hydroxyprostaglandin dehydrogen; | 84.44 | |
| 3o26_A | 311 | Salutaridine reductase; short chain dehydrogenase/ | 84.24 | |
| 3ijr_A | 291 | Oxidoreductase, short chain dehydrogenase/reducta; | 83.74 | |
| 2pjd_A | 343 | Ribosomal RNA small subunit methyltransferase C; g | 83.63 | |
| 3gqv_A | 371 | Enoyl reductase; medium-chain reductase (MDR super | 83.47 | |
| 3swr_A | 1002 | DNA (cytosine-5)-methyltransferase 1; epigenetics, | 82.28 | |
| 3oig_A | 266 | Enoyl-[acyl-carrier-protein] reductase [NADH]; fat | 82.15 | |
| 2cf5_A | 357 | Atccad5, CAD, cinnamyl alcohol dehydrogenase; lign | 82.13 | |
| 3is3_A | 270 | 17BETA-hydroxysteroid dehydrogenase; short chain d | 80.68 | |
| 4ft4_B | 784 | DNA (cytosine-5)-methyltransferase 1; chromodomain | 80.59 |
| >3bzb_A Uncharacterized protein; RED ALGA, protein structure initiat center for eukaryotic structural genomics, CESG, structural genomics; 2.79A {Cyanidioschyzon merolae} | Back alignment and structure |
|---|
Probab=99.93 E-value=1.2e-24 Score=179.33 Aligned_cols=207 Identities=17% Similarity=0.244 Sum_probs=124.2
Q ss_pred cCCCCCCccCCCCCCCcccccccccceeeeecccCCceEEEEecccCCCCcceeechHHHHHHHHhhccCcccCCeEEEe
Q 026036 5 LFSPSSLFAEEDDVTVDEETMETCNGYVERPHQFPEMELVIREFAFHQLNANFLWPGTFSFAEWLMHHREWIERRRCIEL 84 (244)
Q Consensus 5 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~l~~~~~~~~~~~~~~~VLdl 84 (244)
.++.++||..++++.++ ++.+.++.|..+.-.-......++.......+|..+||++..+++++.......++.+||||
T Consensus 8 ~~~~~~l~~~~~~~~~~-~~~~~~~~~~~~~g~~~~~~~~~~i~g~~~~~g~~~~~~~~~l~~~l~~~~~~~~~~~vLDl 86 (281)
T 3bzb_A 8 QLELDGLPGTPPDFYRE-RQRSRVERYQSPAGAPLQCSVQVQTTQEHPLWTSHVWSGARALADTLCWQPELIAGKTVCEL 86 (281)
T ss_dssp ----------------------CEEEEECCSSCC-CCEEEEECC-----------CHHHHHHHHHHHCGGGTTTCEEEET
T ss_pred ccCcccHhhCCCccCCh-HHHHHHHHHHhhccccccCCeEEEECCCCCCCCceeecHHHHHHHHHHhcchhcCCCeEEEe
Confidence 35677899999999988 77888888876642111123555555556666889999999999999988766788899999
Q ss_pred CCCCcHHHHHHHHhCCCeEEEEeC-ChHHHHHHHHHhHH-----hcCCC----CCcceEeeecCCCCC-C----CCCCcc
Q 026036 85 GSGTGALAIFLRKAMNLDITTSDY-NDQEIEDNIAYNST-----TNGIT----PALPHIKHSWGDAFP-I----PNPDWD 149 (244)
Q Consensus 85 G~G~G~~~~~~a~~~~~~v~~~D~-~~~~l~~~~~~~~~-----~~~~~----~~~~~~~~~~~~~~~-~----~~~~fD 149 (244)
|||+|.+++.+++.+..+|+++|+ ++.++ +.+++|+. .+++. .++..+.++|++... . ..++||
T Consensus 87 G~G~G~~~~~~a~~~~~~v~~~D~s~~~~~-~~a~~n~~~N~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~fD 165 (281)
T 3bzb_A 87 GAGAGLVSIVAFLAGADQVVATDYPDPEIL-NSLESNIREHTANSCSSETVKRASPKVVPYRWGDSPDSLQRCTGLQRFQ 165 (281)
T ss_dssp TCTTSHHHHHHHHTTCSEEEEEECSCHHHH-HHHHHHHHTTCC----------CCCEEEECCTTSCTHHHHHHHSCSSBS
T ss_pred cccccHHHHHHHHcCCCEEEEEeCCCHHHH-HHHHHHHHHhhhhhcccccCCCCCeEEEEecCCCccHHHHhhccCCCCC
Confidence 999999999998875559999999 89887 88888884 33332 245566677876432 1 246899
Q ss_pred EEEEcccccCCcChHHHHHHHHHHHHhcC---C--CCceEeecccccCCCCCCCCCCCeEEEeeeeccCccchhhHHHHH
Q 026036 150 LILASDILLYVKQYSNLIKSLSVLLKSYK---P--KDSQVGHLTKNEQGEGTEGLPWPAFLMSWRRRIGKEDETIFFTSC 224 (244)
Q Consensus 150 ~I~~~~~l~~~~~~~~l~~~l~~~~~~lk---~--gG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 224 (244)
+|++++++|+.. .....++.+.++|+ | ||+++++... +++... .....|++.+
T Consensus 166 ~Ii~~dvl~~~~---~~~~ll~~l~~~Lk~~~p~~gG~l~v~~~~------------------~~~~~~-~~~~~~~~~l 223 (281)
T 3bzb_A 166 VVLLADLLSFHQ---AHDALLRSVKMLLALPANDPTAVALVTFTH------------------HRPHLA-ERDLAFFRLV 223 (281)
T ss_dssp EEEEESCCSCGG---GHHHHHHHHHHHBCCTTTCTTCEEEEEECC---------------------------CTHHHHHH
T ss_pred EEEEeCcccChH---HHHHHHHHHHHHhcccCCCCCCEEEEEEEe------------------eecccc-hhHHHHHHHH
Confidence 999999996643 44488889999999 9 9987765111 111111 1136888999
Q ss_pred hhcC-CeEEEec
Q 026036 225 ENAG-LEVKHLG 235 (244)
Q Consensus 225 ~~~G-f~v~~~~ 235 (244)
++.| |+++.+.
T Consensus 224 ~~~G~f~v~~~~ 235 (281)
T 3bzb_A 224 NADGALIAEPWL 235 (281)
T ss_dssp HHSTTEEEEEEE
T ss_pred HhcCCEEEEEec
Confidence 9999 9999884
|
| >3bus_A REBM, methyltransferase; rebeccamycin synthesis; HET: SAH; 2.65A {Lechevalieria aerocolonigenes} | Back alignment and structure |
|---|
Probab=99.80 E-value=2.9e-19 Score=146.18 Aligned_cols=171 Identities=12% Similarity=0.069 Sum_probs=119.3
Q ss_pred echHHHHHHHHhhccCcccCCeEEEeCCCCcHHHHHHHHhCCCeEEEEeCChHHHHHHHHHhHHhcCCCCCcceEeeecC
Q 026036 59 WPGTFSFAEWLMHHREWIERRRCIELGSGTGALAIFLRKAMNLDITTSDYNDQEIEDNIAYNSTTNGITPALPHIKHSWG 138 (244)
Q Consensus 59 w~~~~~l~~~~~~~~~~~~~~~VLdlG~G~G~~~~~~a~~~~~~v~~~D~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 138 (244)
.++...+.+.+.......++.+|||||||+|.++..+++..+.+|+++|+|+.++ +.++++....++..++..+..+..
T Consensus 43 ~~~~~~~~~~l~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~~~~v~gvD~s~~~~-~~a~~~~~~~~~~~~~~~~~~d~~ 121 (273)
T 3bus_A 43 DDATDRLTDEMIALLDVRSGDRVLDVGCGIGKPAVRLATARDVRVTGISISRPQV-NQANARATAAGLANRVTFSYADAM 121 (273)
T ss_dssp HHHHHHHHHHHHHHSCCCTTCEEEEESCTTSHHHHHHHHHSCCEEEEEESCHHHH-HHHHHHHHHTTCTTTEEEEECCTT
T ss_pred HHHHHHHHHHHHHhcCCCCCCEEEEeCCCCCHHHHHHHHhcCCEEEEEeCCHHHH-HHHHHHHHhcCCCcceEEEECccc
Confidence 3445566777777777778899999999999999999887788999999999987 778888777776555555555443
Q ss_pred CCCCCCCCCccEEEEcccccCCcChHHHHHHHHHHHHhcCCCCceEeecccccCCCCCCCC--CCCeEEEeeeeccCccc
Q 026036 139 DAFPIPNPDWDLILASDILLYVKQYSNLIKSLSVLLKSYKPKDSQVGHLTKNEQGEGTEGL--PWPAFLMSWRRRIGKED 216 (244)
Q Consensus 139 ~~~~~~~~~fD~I~~~~~l~~~~~~~~l~~~l~~~~~~lk~gG~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~ 216 (244)
+ +++.+++||+|++.+++++.. +....++++.++|||||++++.............. ....+........ .+
T Consensus 122 ~-~~~~~~~fD~v~~~~~l~~~~---~~~~~l~~~~~~L~pgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~ 195 (273)
T 3bus_A 122 D-LPFEDASFDAVWALESLHHMP---DRGRALREMARVLRPGGTVAIADFVLLAPVEGAKKEAVDAFRAGGGVLSL--GG 195 (273)
T ss_dssp S-CCSCTTCEEEEEEESCTTTSS---CHHHHHHHHHTTEEEEEEEEEEEEEESSCCCHHHHHHHHHHHHHHTCCCC--CC
T ss_pred c-CCCCCCCccEEEEechhhhCC---CHHHHHHHHHHHcCCCeEEEEEEeeccCCCChhHHHHHHHHHhhcCccCC--CC
Confidence 3 456667999999999995443 33589999999999999999885443221100000 0000000001122 23
Q ss_pred hhhHHHHHhhcCCeEEEecc
Q 026036 217 ETIFFTSCENAGLEVKHLGS 236 (244)
Q Consensus 217 ~~~~~~~l~~~Gf~v~~~~~ 236 (244)
...+.++++++||+++.+..
T Consensus 196 ~~~~~~~l~~aGf~~~~~~~ 215 (273)
T 3bus_A 196 IDEYESDVRQAELVVTSTVD 215 (273)
T ss_dssp HHHHHHHHHHTTCEEEEEEE
T ss_pred HHHHHHHHHHcCCeEEEEEE
Confidence 57889999999999987653
|
| >1nkv_A Hypothetical protein YJHP; structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.90A {Escherichia coli} SCOP: c.66.1.21 | Back alignment and structure |
|---|
Probab=99.79 E-value=1.6e-19 Score=146.36 Aligned_cols=165 Identities=15% Similarity=0.062 Sum_probs=114.4
Q ss_pred hHHHHHHHHhhccCcccCCeEEEeCCCCcHHHHHHHHhCCCeEEEEeCChHHHHHHHHHhHHhcCCCCCcceEeeecCCC
Q 026036 61 GTFSFAEWLMHHREWIERRRCIELGSGTGALAIFLRKAMNLDITTSDYNDQEIEDNIAYNSTTNGITPALPHIKHSWGDA 140 (244)
Q Consensus 61 ~~~~l~~~~~~~~~~~~~~~VLdlG~G~G~~~~~~a~~~~~~v~~~D~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 140 (244)
......+.+.......++.+|||+|||+|..+..+++..+.+|+++|+++.++ +.++++....++..++..+..+..+
T Consensus 20 ~~~~~~~~l~~~~~~~~~~~VLDiGcG~G~~~~~la~~~~~~v~gvD~s~~~l-~~a~~~~~~~~~~~~v~~~~~d~~~- 97 (256)
T 1nkv_A 20 FTEEKYATLGRVLRMKPGTRILDLGSGSGEMLCTWARDHGITGTGIDMSSLFT-AQAKRRAEELGVSERVHFIHNDAAG- 97 (256)
T ss_dssp CCHHHHHHHHHHTCCCTTCEEEEETCTTCHHHHHHHHHTCCEEEEEESCHHHH-HHHHHHHHHTTCTTTEEEEESCCTT-
T ss_pred CCHHHHHHHHHhcCCCCCCEEEEECCCCCHHHHHHHHhcCCeEEEEeCCHHHH-HHHHHHHHhcCCCcceEEEECChHh-
Confidence 34445555655566678899999999999999999988788999999999997 7888888777765555665555543
Q ss_pred CCCCCCCccEEEEcccccCCcChHHHHHHHHHHHHhcCCCCceEeecccccCCCCCCCCCCCeEEEeeeeccCccchhhH
Q 026036 141 FPIPNPDWDLILASDILLYVKQYSNLIKSLSVLLKSYKPKDSQVGHLTKNEQGEGTEGLPWPAFLMSWRRRIGKEDETIF 220 (244)
Q Consensus 141 ~~~~~~~fD~I~~~~~l~~~~~~~~l~~~l~~~~~~lk~gG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 220 (244)
++. +++||+|++..++++.. +..+.++++.++|||||++++..+.......... ....+......... +...+
T Consensus 98 ~~~-~~~fD~V~~~~~~~~~~---~~~~~l~~~~r~LkpgG~l~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~--~~~~~ 170 (256)
T 1nkv_A 98 YVA-NEKCDVAACVGATWIAG---GFAGAEELLAQSLKPGGIMLIGEPYWRQLPATEE-IAQACGVSSTSDFL--TLPGL 170 (256)
T ss_dssp CCC-SSCEEEEEEESCGGGTS---SSHHHHHHHTTSEEEEEEEEEEEEEETTCCSSHH-HHHTTTCSCGGGSC--CHHHH
T ss_pred CCc-CCCCCEEEECCChHhcC---CHHHHHHHHHHHcCCCeEEEEecCcccCCCChHH-HHHHHhcccccccC--CHHHH
Confidence 233 67899999999995443 3458999999999999999987544322110000 00000000111222 35788
Q ss_pred HHHHhhcCCeEEEe
Q 026036 221 FTSCENAGLEVKHL 234 (244)
Q Consensus 221 ~~~l~~~Gf~v~~~ 234 (244)
.++++++||+++.+
T Consensus 171 ~~~l~~aGf~~~~~ 184 (256)
T 1nkv_A 171 VGAFDDLGYDVVEM 184 (256)
T ss_dssp HHHHHTTTBCCCEE
T ss_pred HHHHHHCCCeeEEE
Confidence 99999999987654
|
| >3ujc_A Phosphoethanolamine N-methyltransferase; parasite; HET: PC; 1.19A {Plasmodium falciparum} PDB: 3uj9_A* 3uj6_A* 3uj7_A* 3uj8_A* 3uja_A 3ujb_A* 4fgz_A* 3ujd_A* | Back alignment and structure |
|---|
Probab=99.79 E-value=2.6e-19 Score=145.58 Aligned_cols=172 Identities=12% Similarity=0.139 Sum_probs=120.0
Q ss_pred ceeechHHHHHHHHhhccCcccCCeEEEeCCCCcHHHHHHHHhCCCeEEEEeCChHHHHHHHHHhHHhcCCCCCcceEee
Q 026036 56 NFLWPGTFSFAEWLMHHREWIERRRCIELGSGTGALAIFLRKAMNLDITTSDYNDQEIEDNIAYNSTTNGITPALPHIKH 135 (244)
Q Consensus 56 ~~~w~~~~~l~~~~~~~~~~~~~~~VLdlG~G~G~~~~~~a~~~~~~v~~~D~~~~~l~~~~~~~~~~~~~~~~~~~~~~ 135 (244)
...++.+..+.+.+.......++.+|||+|||+|.++..++...+.+|+++|+|+.++ +.++++.... .++..+..
T Consensus 34 ~~~~~~~~~~~~~~~~~~~~~~~~~vLdiG~G~G~~~~~l~~~~~~~v~~vD~s~~~~-~~a~~~~~~~---~~~~~~~~ 109 (266)
T 3ujc_A 34 NYISSGGLEATKKILSDIELNENSKVLDIGSGLGGGCMYINEKYGAHTHGIDICSNIV-NMANERVSGN---NKIIFEAN 109 (266)
T ss_dssp TCCSTTHHHHHHHHTTTCCCCTTCEEEEETCTTSHHHHHHHHHHCCEEEEEESCHHHH-HHHHHTCCSC---TTEEEEEC
T ss_pred CccccchHHHHHHHHHhcCCCCCCEEEEECCCCCHHHHHHHHHcCCEEEEEeCCHHHH-HHHHHHhhcC---CCeEEEEC
Confidence 4466778888888888777778899999999999999999887678999999999987 7776665432 23344444
Q ss_pred ecCCCCCCCCCCccEEEEcccccCCcChHHHHHHHHHHHHhcCCCCceEeecccccCCCCCCCCCCCeEEEeeeeccCcc
Q 026036 136 SWGDAFPIPNPDWDLILASDILLYVKQYSNLIKSLSVLLKSYKPKDSQVGHLTKNEQGEGTEGLPWPAFLMSWRRRIGKE 215 (244)
Q Consensus 136 ~~~~~~~~~~~~fD~I~~~~~l~~~~~~~~l~~~l~~~~~~lk~gG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 215 (244)
+..+ .++.+++||+|++++++ ++...++...+++++.++|||||++++..+...... ........+........ .
T Consensus 110 d~~~-~~~~~~~fD~v~~~~~l-~~~~~~~~~~~l~~~~~~L~pgG~l~~~~~~~~~~~-~~~~~~~~~~~~~~~~~--~ 184 (266)
T 3ujc_A 110 DILT-KEFPENNFDLIYSRDAI-LALSLENKNKLFQKCYKWLKPTGTLLITDYCATEKE-NWDDEFKEYVKQRKYTL--I 184 (266)
T ss_dssp CTTT-CCCCTTCEEEEEEESCG-GGSCHHHHHHHHHHHHHHEEEEEEEEEEEEEESCGG-GCCHHHHHHHHHHTCCC--C
T ss_pred cccc-CCCCCCcEEEEeHHHHH-HhcChHHHHHHHHHHHHHcCCCCEEEEEEeccCCcc-cchHHHHHHHhcCCCCC--C
Confidence 4432 35567899999999999 444447778999999999999999998854433210 00000000000000111 2
Q ss_pred chhhHHHHHhhcCCeEEEecc
Q 026036 216 DETIFFTSCENAGLEVKHLGS 236 (244)
Q Consensus 216 ~~~~~~~~l~~~Gf~v~~~~~ 236 (244)
+.+.+.++++++||+++++..
T Consensus 185 ~~~~~~~~l~~~Gf~~~~~~~ 205 (266)
T 3ujc_A 185 TVEEYADILTACNFKNVVSKD 205 (266)
T ss_dssp CHHHHHHHHHHTTCEEEEEEE
T ss_pred CHHHHHHHHHHcCCeEEEEEe
Confidence 357899999999999887653
|
| >3vc1_A Geranyl diphosphate 2-C-methyltransferase; rossmann fold, methyltransferase fold, SAM-dependent methyltransferase; HET: SAH GST GOL; 1.82A {Streptomyces coelicolor} PDB: 3vc2_A* 4f84_A* 4f85_A 4f86_A* | Back alignment and structure |
|---|
Probab=99.79 E-value=7e-19 Score=146.90 Aligned_cols=162 Identities=12% Similarity=0.062 Sum_probs=114.0
Q ss_pred HHHhhccC-cccCCeEEEeCCCCcHHHHHHHHhCCCeEEEEeCChHHHHHHHHHhHHhcCCCCCcceEeeecCCCCCCCC
Q 026036 67 EWLMHHRE-WIERRRCIELGSGTGALAIFLRKAMNLDITTSDYNDQEIEDNIAYNSTTNGITPALPHIKHSWGDAFPIPN 145 (244)
Q Consensus 67 ~~~~~~~~-~~~~~~VLdlG~G~G~~~~~~a~~~~~~v~~~D~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 145 (244)
+.+..... ..++.+|||+|||+|.++..+++..+.+|+++|+++.++ +.++++...+++..++..+..+.. .+++.+
T Consensus 106 ~~l~~~l~~~~~~~~vLDiGcG~G~~~~~la~~~~~~v~gvD~s~~~~-~~a~~~~~~~~~~~~v~~~~~d~~-~~~~~~ 183 (312)
T 3vc1_A 106 EFLMDHLGQAGPDDTLVDAGCGRGGSMVMAHRRFGSRVEGVTLSAAQA-DFGNRRARELRIDDHVRSRVCNML-DTPFDK 183 (312)
T ss_dssp HHHHTTSCCCCTTCEEEEESCTTSHHHHHHHHHHCCEEEEEESCHHHH-HHHHHHHHHTTCTTTEEEEECCTT-SCCCCT
T ss_pred HHHHHHhccCCCCCEEEEecCCCCHHHHHHHHHcCCEEEEEeCCHHHH-HHHHHHHHHcCCCCceEEEECChh-cCCCCC
Confidence 33444444 667889999999999999999887678999999999987 888888888877655655555543 345566
Q ss_pred CCccEEEEcccccCCcChHHHHHHHHHHHHhcCCCCceEeecccccCCCCCCCCCCCeEEEeeeeccCccchhhHHHHHh
Q 026036 146 PDWDLILASDILLYVKQYSNLIKSLSVLLKSYKPKDSQVGHLTKNEQGEGTEGLPWPAFLMSWRRRIGKEDETIFFTSCE 225 (244)
Q Consensus 146 ~~fD~I~~~~~l~~~~~~~~l~~~l~~~~~~lk~gG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 225 (244)
++||+|++++++++. . ..+.++++.++|||||++++.+................+...+.... .+..++.++++
T Consensus 184 ~~fD~V~~~~~l~~~-~---~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~s~~~~~~~l~ 257 (312)
T 3vc1_A 184 GAVTASWNNESTMYV-D---LHDLFSEHSRFLKVGGRYVTITGCWNPRYGQPSKWVSQINAHFECNI--HSRREYLRAMA 257 (312)
T ss_dssp TCEEEEEEESCGGGS-C---HHHHHHHHHHHEEEEEEEEEEEEEECTTTCSCCHHHHHHHHHHTCCC--CBHHHHHHHHH
T ss_pred CCEeEEEECCchhhC-C---HHHHHHHHHHHcCCCcEEEEEEccccccccchhHHHHHHHhhhcCCC--CCHHHHHHHHH
Confidence 799999999999443 3 56999999999999999998854443321110000000000000112 23588999999
Q ss_pred hcCCeEEEecc
Q 026036 226 NAGLEVKHLGS 236 (244)
Q Consensus 226 ~~Gf~v~~~~~ 236 (244)
++||+++.+..
T Consensus 258 ~aGf~~~~~~~ 268 (312)
T 3vc1_A 258 DNRLVPHTIVD 268 (312)
T ss_dssp TTTEEEEEEEE
T ss_pred HCCCEEEEEEe
Confidence 99999887754
|
| >3f4k_A Putative methyltransferase; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; 2.30A {Bacteroides thetaiotaomicron} PDB: 3t0i_A* 3svz_A* 3sxj_A* | Back alignment and structure |
|---|
Probab=99.78 E-value=8.1e-19 Score=142.20 Aligned_cols=165 Identities=17% Similarity=0.131 Sum_probs=115.9
Q ss_pred hHHHHHHHHhhcc-CcccCCeEEEeCCCCcHHHHHHHHhCCCeEEEEeCChHHHHHHHHHhHHhcCCCCCcceEeeecCC
Q 026036 61 GTFSFAEWLMHHR-EWIERRRCIELGSGTGALAIFLRKAMNLDITTSDYNDQEIEDNIAYNSTTNGITPALPHIKHSWGD 139 (244)
Q Consensus 61 ~~~~l~~~~~~~~-~~~~~~~VLdlG~G~G~~~~~~a~~~~~~v~~~D~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 139 (244)
......+.+.... ...++.+|||+|||+|..+..+++..+.+|+++|+++.++ +.++++...++++.++..+..+. .
T Consensus 29 ~~~~~~~~~l~~l~~~~~~~~vLDiG~G~G~~~~~l~~~~~~~v~~vD~s~~~~-~~a~~~~~~~~~~~~~~~~~~d~-~ 106 (257)
T 3f4k_A 29 GSPEATRKAVSFINELTDDAKIADIGCGTGGQTLFLADYVKGQITGIDLFPDFI-EIFNENAVKANCADRVKGITGSM-D 106 (257)
T ss_dssp CCHHHHHHHHTTSCCCCTTCEEEEETCTTSHHHHHHHHHCCSEEEEEESCHHHH-HHHHHHHHHTTCTTTEEEEECCT-T
T ss_pred CCHHHHHHHHHHHhcCCCCCeEEEeCCCCCHHHHHHHHhCCCeEEEEECCHHHH-HHHHHHHHHcCCCCceEEEECCh-h
Confidence 4444454444443 4567889999999999999999998767999999999987 88888888888766566665555 3
Q ss_pred CCCCCCCCccEEEEcccccCCcChHHHHHHHHHHHHhcCCCCceEeecccccCCCCCCCCCCCeEEEeeeeccCccchhh
Q 026036 140 AFPIPNPDWDLILASDILLYVKQYSNLIKSLSVLLKSYKPKDSQVGHLTKNEQGEGTEGLPWPAFLMSWRRRIGKEDETI 219 (244)
Q Consensus 140 ~~~~~~~~fD~I~~~~~l~~~~~~~~l~~~l~~~~~~lk~gG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 219 (244)
.+++.+++||+|+++.++++. . ..+.++++.++|||||++++............. ....|.. ..+.. .+...
T Consensus 107 ~~~~~~~~fD~v~~~~~l~~~-~---~~~~l~~~~~~L~pgG~l~~~~~~~~~~~~~~~-~~~~~~~-~~~~~--~~~~~ 178 (257)
T 3f4k_A 107 NLPFQNEELDLIWSEGAIYNI-G---FERGMNEWSKYLKKGGFIAVSEASWFTSERPAE-IEDFWMD-AYPEI--SVIPT 178 (257)
T ss_dssp SCSSCTTCEEEEEEESCSCCC-C---HHHHHHHHHTTEEEEEEEEEEEEEESSSCCCHH-HHHHHHH-HCTTC--CBHHH
T ss_pred hCCCCCCCEEEEEecChHhhc-C---HHHHHHHHHHHcCCCcEEEEEEeeccCCCChHH-HHHHHHH-hCCCC--CCHHH
Confidence 345667899999999999443 3 458999999999999999988654322110000 0000000 00112 23578
Q ss_pred HHHHHhhcCCeEEEec
Q 026036 220 FFTSCENAGLEVKHLG 235 (244)
Q Consensus 220 ~~~~l~~~Gf~v~~~~ 235 (244)
+.++++++||+++.+.
T Consensus 179 ~~~~l~~aGf~~v~~~ 194 (257)
T 3f4k_A 179 CIDKMERAGYTPTAHF 194 (257)
T ss_dssp HHHHHHHTTEEEEEEE
T ss_pred HHHHHHHCCCeEEEEE
Confidence 8999999999988753
|
| >3hem_A Cyclopropane-fatty-acyl-phospholipid synthase 2; protein-ligand complex, cytoplasm, lipid synthesis, methyltransferase; HET: D22; 2.39A {Mycobacterium tuberculosis} SCOP: c.66.1.18 PDB: 1kpi_A* | Back alignment and structure |
|---|
Probab=99.78 E-value=8.6e-18 Score=139.58 Aligned_cols=169 Identities=8% Similarity=0.044 Sum_probs=115.3
Q ss_pred HHHHHHHhhccCcccCCeEEEeCCCCcHHHHHHHHhCCCeEEEEeCChHHHHHHHHHhHHhcCCCCCcceEeeecCCCCC
Q 026036 63 FSFAEWLMHHREWIERRRCIELGSGTGALAIFLRKAMNLDITTSDYNDQEIEDNIAYNSTTNGITPALPHIKHSWGDAFP 142 (244)
Q Consensus 63 ~~l~~~~~~~~~~~~~~~VLdlG~G~G~~~~~~a~~~~~~v~~~D~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 142 (244)
....+.+.......++.+|||||||+|.++..+++..+.+|+++|+|+.++ +.++++...+++..++..+..+..+
T Consensus 58 ~~~~~~~~~~~~~~~~~~vLDiGcG~G~~~~~la~~~~~~v~gvD~s~~~~-~~a~~~~~~~~~~~~v~~~~~d~~~--- 133 (302)
T 3hem_A 58 YAKRKLALDKLNLEPGMTLLDIGCGWGSTMRHAVAEYDVNVIGLTLSENQY-AHDKAMFDEVDSPRRKEVRIQGWEE--- 133 (302)
T ss_dssp HHHHHHHHHTTCCCTTCEEEEETCTTSHHHHHHHHHHCCEEEEEECCHHHH-HHHHHHHHHSCCSSCEEEEECCGGG---
T ss_pred HHHHHHHHHHcCCCCcCEEEEeeccCcHHHHHHHHhCCCEEEEEECCHHHH-HHHHHHHHhcCCCCceEEEECCHHH---
Confidence 334455666666678899999999999999999988668999999999987 8888888887775555555544432
Q ss_pred CCCCCccEEEEcccccCCc------ChHHHHHHHHHHHHhcCCCCceEeecccccCCCCCCCCCCC---------eEEEe
Q 026036 143 IPNPDWDLILASDILLYVK------QYSNLIKSLSVLLKSYKPKDSQVGHLTKNEQGEGTEGLPWP---------AFLMS 207 (244)
Q Consensus 143 ~~~~~fD~I~~~~~l~~~~------~~~~l~~~l~~~~~~lk~gG~~~~~~~~~~~~~~~~~~~~~---------~~~~~ 207 (244)
. +++||+|+++.++.+.. ....+...++++.++|||||++++................+ .|+..
T Consensus 134 ~-~~~fD~v~~~~~~~~~~d~~~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 212 (302)
T 3hem_A 134 F-DEPVDRIVSLGAFEHFADGAGDAGFERYDTFFKKFYNLTPDDGRMLLHTITIPDKEEAQELGLTSPMSLLRFIKFILT 212 (302)
T ss_dssp C-CCCCSEEEEESCGGGTTCCSSCCCTTHHHHHHHHHHHSSCTTCEEEEEEEECCCHHHHHHHTCCCCHHHHHHHHHHHH
T ss_pred c-CCCccEEEEcchHHhcCccccccchhHHHHHHHHHHHhcCCCcEEEEEEEeccCccchhhccccccccccchHHHHHH
Confidence 3 67899999999984432 23566799999999999999999885443221100000000 00000
Q ss_pred e-eeccCccchhhHHHHHhhcCCeEEEecc
Q 026036 208 W-RRRIGKEDETIFFTSCENAGLEVKHLGS 236 (244)
Q Consensus 208 ~-~~~~~~~~~~~~~~~l~~~Gf~v~~~~~ 236 (244)
+ -+.....+..++.++++++||+++.+..
T Consensus 213 ~~~p~~~~~s~~~~~~~l~~aGf~~~~~~~ 242 (302)
T 3hem_A 213 EIFPGGRLPRISQVDYYSSNAGWKVERYHR 242 (302)
T ss_dssp HTCTTCCCCCHHHHHHHHHHHTCEEEEEEE
T ss_pred hcCCCCCCCCHHHHHHHHHhCCcEEEEEEe
Confidence 0 0000112357889999999999988753
|
| >4gek_A TRNA (CMO5U34)-methyltransferase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc, rossmann fold; HET: GEK; 1.50A {Escherichia coli} PDB: 1im8_A* | Back alignment and structure |
|---|
Probab=99.78 E-value=3.9e-18 Score=138.85 Aligned_cols=108 Identities=17% Similarity=0.149 Sum_probs=85.7
Q ss_pred cccCCeEEEeCCCCcHHHHHHHHhC---CCeEEEEeCChHHHHHHHHHhHHhcCCCCCcceEeeecCCCCCCCCCCccEE
Q 026036 75 WIERRRCIELGSGTGALAIFLRKAM---NLDITTSDYNDQEIEDNIAYNSTTNGITPALPHIKHSWGDAFPIPNPDWDLI 151 (244)
Q Consensus 75 ~~~~~~VLdlG~G~G~~~~~~a~~~---~~~v~~~D~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fD~I 151 (244)
..+|.+|||||||+|..++.+++.. +++|+|+|+|+.|+ +.+++++...+...++..+ .++....+.+.||+|
T Consensus 68 ~~~~~~vLDlGcGtG~~~~~la~~~~~~~~~v~gvD~s~~ml-~~A~~~~~~~~~~~~v~~~---~~D~~~~~~~~~d~v 143 (261)
T 4gek_A 68 VQPGTQVYDLGCSLGAATLSVRRNIHHDNCKIIAIDNSPAMI-ERCRRHIDAYKAPTPVDVI---EGDIRDIAIENASMV 143 (261)
T ss_dssp CCTTCEEEEETCTTTHHHHHHHHTCCSSSCEEEEEESCHHHH-HHHHHHHHTSCCSSCEEEE---ESCTTTCCCCSEEEE
T ss_pred CCCCCEEEEEeCCCCHHHHHHHHhcCCCCCEEEEEECCHHHH-HHHHHHHHhhccCceEEEe---ecccccccccccccc
Confidence 3478899999999999999998864 56899999999998 8888887766654444444 344444445679999
Q ss_pred EEcccccCCcChHHHHHHHHHHHHhcCCCCceEeec
Q 026036 152 LASDILLYVKQYSNLIKSLSVLLKSYKPKDSQVGHL 187 (244)
Q Consensus 152 ~~~~~l~~~~~~~~l~~~l~~~~~~lk~gG~~~~~~ 187 (244)
+++.++ ++...++..++++++++.|||||++++..
T Consensus 144 ~~~~~l-~~~~~~~~~~~l~~i~~~LkpGG~lii~e 178 (261)
T 4gek_A 144 VLNFTL-QFLEPSERQALLDKIYQGLNPGGALVLSE 178 (261)
T ss_dssp EEESCG-GGSCHHHHHHHHHHHHHHEEEEEEEEEEE
T ss_pred eeeeee-eecCchhHhHHHHHHHHHcCCCcEEEEEe
Confidence 999998 55555666789999999999999998873
|
| >3jwg_A HEN1, methyltransferase type 12; 1.90A {Clostridium thermocellum} PDB: 3jwi_A | Back alignment and structure |
|---|
Probab=99.78 E-value=3.2e-18 Score=135.55 Aligned_cols=169 Identities=15% Similarity=0.075 Sum_probs=107.6
Q ss_pred chHHHHHHHHhhccCcccCCeEEEeCCCCcHHHHHHHHhCC-CeEEEEeCChHHHHHHHHHhHHhcCCCC----CcceEe
Q 026036 60 PGTFSFAEWLMHHREWIERRRCIELGSGTGALAIFLRKAMN-LDITTSDYNDQEIEDNIAYNSTTNGITP----ALPHIK 134 (244)
Q Consensus 60 ~~~~~l~~~~~~~~~~~~~~~VLdlG~G~G~~~~~~a~~~~-~~v~~~D~~~~~l~~~~~~~~~~~~~~~----~~~~~~ 134 (244)
+-.....+++.......++.+|||||||+|.++..++..+. .+|+++|+++.++ +.++++...++++. ++..+.
T Consensus 12 ~~~~~~~~~l~~~l~~~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~-~~a~~~~~~~~~~~~~~~~v~~~~ 90 (219)
T 3jwg_A 12 NLNQQRLGTVVAVLKSVNAKKVIDLGCGEGNLLSLLLKDKSFEQITGVDVSYSVL-ERAKDRLKIDRLPEMQRKRISLFQ 90 (219)
T ss_dssp CHHHHHHHHHHHHHHHTTCCEEEEETCTTCHHHHHHHTSTTCCEEEEEESCHHHH-HHHHHHHTGGGSCHHHHTTEEEEE
T ss_pred cchHHHHHHHHHHHhhcCCCEEEEecCCCCHHHHHHHhcCCCCEEEEEECCHHHH-HHHHHHHHhhccccccCcceEEEe
Confidence 34445555555554445778999999999999999987653 7999999999987 78877776655432 334444
Q ss_pred eecCCCCCCCCCCccEEEEcccccCCcChHHHHHHHHHHHHhcCCCCceEeecccccCCCCCCCCCCCeEEEeeeeccCc
Q 026036 135 HSWGDAFPIPNPDWDLILASDILLYVKQYSNLIKSLSVLLKSYKPKDSQVGHLTKNEQGEGTEGLPWPAFLMSWRRRIGK 214 (244)
Q Consensus 135 ~~~~~~~~~~~~~fD~I~~~~~l~~~~~~~~l~~~l~~~~~~lk~gG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 214 (244)
.+. ...+...++||+|++++++ ++...+.+.++++++.+.|||||.++.. +....+. .+...+.....+..+...
T Consensus 91 ~d~-~~~~~~~~~fD~V~~~~~l-~~~~~~~~~~~l~~~~~~LkpgG~~i~~-~~~~~~~--~~~~~~~~~~~~~~~~~~ 165 (219)
T 3jwg_A 91 SSL-VYRDKRFSGYDAATVIEVI-EHLDENRLQAFEKVLFEFTRPQTVIVST-PNKEYNF--HYGNLFEGNLRHRDHRFE 165 (219)
T ss_dssp CCS-SSCCGGGTTCSEEEEESCG-GGCCHHHHHHHHHHHHTTTCCSEEEEEE-EBGGGGG--CCCCT-----GGGCCTTS
T ss_pred Ccc-cccccccCCCCEEEEHHHH-HhCCHHHHHHHHHHHHHhhCCCEEEEEc-cchhhhh--hhcccCcccccccCceee
Confidence 333 2233345689999999999 5555566779999999999999954443 3322111 000000000111111111
Q ss_pred cchhhHH----HHHhhcCCeEEEe
Q 026036 215 EDETIFF----TSCENAGLEVKHL 234 (244)
Q Consensus 215 ~~~~~~~----~~l~~~Gf~v~~~ 234 (244)
-+..+|. ++++++||+++..
T Consensus 166 ~~~~~l~~~~~~l~~~~Gf~v~~~ 189 (219)
T 3jwg_A 166 WTRKEFQTWAVKVAEKYGYSVRFL 189 (219)
T ss_dssp BCHHHHHHHHHHHHHHHTEEEEEE
T ss_pred ecHHHHHHHHHHHHHHCCcEEEEE
Confidence 1245666 7899999998866
|
| >3lpm_A Putative methyltransferase; structural genomics, protein structure initiative, NEW YORK structural genomix research consortium, nysgxrc; 2.40A {Listeria monocytogenes} | Back alignment and structure |
|---|
Probab=99.77 E-value=8.2e-18 Score=136.82 Aligned_cols=164 Identities=15% Similarity=0.104 Sum_probs=117.0
Q ss_pred cCCceEEEEecccCCCCcceeechHHHHHHHHhhccCcc-cCCeEEEeCCCCcHHHHHHHHhCCCeEEEEeCChHHHHHH
Q 026036 38 FPEMELVIREFAFHQLNANFLWPGTFSFAEWLMHHREWI-ERRRCIELGSGTGALAIFLRKAMNLDITTSDYNDQEIEDN 116 (244)
Q Consensus 38 ~~~~~~~~~~~~~~~~~~~~~w~~~~~l~~~~~~~~~~~-~~~~VLdlG~G~G~~~~~~a~~~~~~v~~~D~~~~~l~~~ 116 (244)
+....+.+.|.... ..+.-.+..++.++ ... ++.+|||+|||+|.+++.+++....+|+++|+++.++ +.
T Consensus 17 ~~~~~~~i~q~~~~----~~~~~d~~ll~~~~----~~~~~~~~vLDlG~G~G~~~~~la~~~~~~v~gvDi~~~~~-~~ 87 (259)
T 3lpm_A 17 LLAENLRIIQSPSV----FSFSIDAVLLAKFS----YLPIRKGKIIDLCSGNGIIPLLLSTRTKAKIVGVEIQERLA-DM 87 (259)
T ss_dssp ETTTTEEEEEBTTT----BCCCHHHHHHHHHC----CCCSSCCEEEETTCTTTHHHHHHHTTCCCEEEEECCSHHHH-HH
T ss_pred ccCCCEEEEeCCCC----ccCcHHHHHHHHHh----cCCCCCCEEEEcCCchhHHHHHHHHhcCCcEEEEECCHHHH-HH
Confidence 34456777765432 22333677777775 344 6789999999999999999988666999999999987 89
Q ss_pred HHHhHHhcCCCCCcceEeeecCCCCC-CCCCCccEEEEcccccCC-----------------cChHHHHHHHHHHHHhcC
Q 026036 117 IAYNSTTNGITPALPHIKHSWGDAFP-IPNPDWDLILASDILLYV-----------------KQYSNLIKSLSVLLKSYK 178 (244)
Q Consensus 117 ~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~fD~I~~~~~l~~~-----------------~~~~~l~~~l~~~~~~lk 178 (244)
+++|+..+++..++..+..+..+... +..++||+|+++.+++.. .....+...++.+.++||
T Consensus 88 a~~n~~~~~~~~~v~~~~~D~~~~~~~~~~~~fD~Ii~npPy~~~~~~~~~~~~~~~~~a~~~~~~~~~~~l~~~~~~Lk 167 (259)
T 3lpm_A 88 AKRSVAYNQLEDQIEIIEYDLKKITDLIPKERADIVTCNPPYFATPDTSLKNTNEHFRIARHEVMCTLEDTIRVAASLLK 167 (259)
T ss_dssp HHHHHHHTTCTTTEEEECSCGGGGGGTSCTTCEEEEEECCCC-----------------------HHHHHHHHHHHHHEE
T ss_pred HHHHHHHCCCcccEEEEECcHHHhhhhhccCCccEEEECCCCCCCccccCCCCchHHHhhhccccCCHHHHHHHHHHHcc
Confidence 99999998886666666555543322 335789999998886432 011345689999999999
Q ss_pred CCCceEeecccccCCCCCCCCCCCeEEEeeeeccCccchhhHHHHHhhcCCeEEEec
Q 026036 179 PKDSQVGHLTKNEQGEGTEGLPWPAFLMSWRRRIGKEDETIFFTSCENAGLEVKHLG 235 (244)
Q Consensus 179 ~gG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gf~v~~~~ 235 (244)
|||+++++. .. ....++.+.++++||+++.+.
T Consensus 168 pgG~l~~~~---------------------~~----~~~~~~~~~l~~~~~~~~~~~ 199 (259)
T 3lpm_A 168 QGGKANFVH---------------------RP----ERLLDIIDIMRKYRLEPKRIQ 199 (259)
T ss_dssp EEEEEEEEE---------------------CT----TTHHHHHHHHHHTTEEEEEEE
T ss_pred CCcEEEEEE---------------------cH----HHHHHHHHHHHHCCCceEEEE
Confidence 999888751 11 124678888999999887654
|
| >3jwh_A HEN1; methyltransferase; HET: SAH; 2.20A {Anabaena variabilis} PDB: 3jwj_A | Back alignment and structure |
|---|
Probab=99.77 E-value=2.9e-18 Score=135.65 Aligned_cols=166 Identities=17% Similarity=0.055 Sum_probs=106.4
Q ss_pred HHHHHHHHhhccCcccCCeEEEeCCCCcHHHHHHHHhCC-CeEEEEeCChHHHHHHHHHhHHhcCCCC----CcceEeee
Q 026036 62 TFSFAEWLMHHREWIERRRCIELGSGTGALAIFLRKAMN-LDITTSDYNDQEIEDNIAYNSTTNGITP----ALPHIKHS 136 (244)
Q Consensus 62 ~~~l~~~~~~~~~~~~~~~VLdlG~G~G~~~~~~a~~~~-~~v~~~D~~~~~l~~~~~~~~~~~~~~~----~~~~~~~~ 136 (244)
.....+++.......++.+|||+|||+|.++..+++.+. .+|+++|+++.++ +.++++...++++. ++..+..+
T Consensus 14 ~~~~~~~l~~~l~~~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~-~~a~~~~~~~~~~~~~~~~v~~~~~d 92 (217)
T 3jwh_A 14 NQQRMNGVVAALKQSNARRVIDLGCGQGNLLKILLKDSFFEQITGVDVSYRSL-EIAQERLDRLRLPRNQWERLQLIQGA 92 (217)
T ss_dssp HHHHHHHHHHHHHHTTCCEEEEETCTTCHHHHHHHHCTTCSEEEEEESCHHHH-HHHHHHHTTCCCCHHHHTTEEEEECC
T ss_pred HHHHHHHHHHHHHhcCCCEEEEeCCCCCHHHHHHHhhCCCCEEEEEECCHHHH-HHHHHHHHHhcCCcccCcceEEEeCC
Confidence 344445555544455778999999999999999988653 6999999999987 88888877666532 33444333
Q ss_pred cCCCCCCCCCCccEEEEcccccCCcChHHHHHHHHHHHHhcCCCCceEeecccccCCC--CCCCCCCCeEEEeeeeccCc
Q 026036 137 WGDAFPIPNPDWDLILASDILLYVKQYSNLIKSLSVLLKSYKPKDSQVGHLTKNEQGE--GTEGLPWPAFLMSWRRRIGK 214 (244)
Q Consensus 137 ~~~~~~~~~~~fD~I~~~~~l~~~~~~~~l~~~l~~~~~~lk~gG~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~ 214 (244)
. ...+...++||+|+++.++ ++...+.+.++++++.+.|||||.+++.. ....+. ..+. ........+...+
T Consensus 93 ~-~~~~~~~~~fD~v~~~~~l-~~~~~~~~~~~l~~~~~~LkpgG~li~~~-~~~~~~~~~~~~-~~~~~~~~~~~~~-- 166 (217)
T 3jwh_A 93 L-TYQDKRFHGYDAATVIEVI-EHLDLSRLGAFERVLFEFAQPKIVIVTTP-NIEYNVKFANLP-AGKLRHKDHRFEW-- 166 (217)
T ss_dssp T-TSCCGGGCSCSEEEEESCG-GGCCHHHHHHHHHHHHTTTCCSEEEEEEE-BHHHHHHTC------------CCSCB--
T ss_pred c-ccccccCCCcCEEeeHHHH-HcCCHHHHHHHHHHHHHHcCCCEEEEEcc-Ccccchhhcccc-ccccccccccccc--
Confidence 3 1223334689999999999 54555667899999999999999655542 211100 0000 0000001111111
Q ss_pred cchhhHH----HHHhhcCCeEEEec
Q 026036 215 EDETIFF----TSCENAGLEVKHLG 235 (244)
Q Consensus 215 ~~~~~~~----~~l~~~Gf~v~~~~ 235 (244)
+..+|. ++++++||+++..+
T Consensus 167 -~~~~l~~~~~~~~~~~Gf~v~~~~ 190 (217)
T 3jwh_A 167 -TRSQFQNWANKITERFAYNVQFQP 190 (217)
T ss_dssp -CHHHHHHHHHHHHHHSSEEEEECC
T ss_pred -CHHHHHHHHHHHHHHcCceEEEEe
Confidence 246666 88999999998763
|
| >3kkz_A Uncharacterized protein Q5LES9; putative methyltransferase, BFR250, NESG, structural genomics, PSI-2; HET: SAM; 1.68A {Bacteroides fragilis nctc 9343} PDB: 3e7p_A 3t7s_A* 3t7r_A* 3t7t_A* | Back alignment and structure |
|---|
Probab=99.77 E-value=1e-18 Score=142.60 Aligned_cols=165 Identities=16% Similarity=0.129 Sum_probs=114.8
Q ss_pred hHHHHHHHHhhcc-CcccCCeEEEeCCCCcHHHHHHHHhCCCeEEEEeCChHHHHHHHHHhHHhcCCCCCcceEeeecCC
Q 026036 61 GTFSFAEWLMHHR-EWIERRRCIELGSGTGALAIFLRKAMNLDITTSDYNDQEIEDNIAYNSTTNGITPALPHIKHSWGD 139 (244)
Q Consensus 61 ~~~~l~~~~~~~~-~~~~~~~VLdlG~G~G~~~~~~a~~~~~~v~~~D~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 139 (244)
......+.+.... ...++.+|||||||+|..+..+++....+|+++|+++.++ +.++++....+++.++..+..+..
T Consensus 29 ~~~~~~~~~l~~l~~~~~~~~vLDiGcG~G~~~~~la~~~~~~v~gvD~s~~~~-~~a~~~~~~~~~~~~v~~~~~d~~- 106 (267)
T 3kkz_A 29 GSPEVTLKALSFIDNLTEKSLIADIGCGTGGQTMVLAGHVTGQVTGLDFLSGFI-DIFNRNARQSGLQNRVTGIVGSMD- 106 (267)
T ss_dssp CCHHHHHHHHTTCCCCCTTCEEEEETCTTCHHHHHHHTTCSSEEEEEESCHHHH-HHHHHHHHHTTCTTTEEEEECCTT-
T ss_pred CCHHHHHHHHHhcccCCCCCEEEEeCCCCCHHHHHHHhccCCEEEEEeCCHHHH-HHHHHHHHHcCCCcCcEEEEcChh-
Confidence 3344444444433 3567889999999999999999988667999999999987 888888888777666666666653
Q ss_pred CCCCCCCCccEEEEcccccCCcChHHHHHHHHHHHHhcCCCCceEeecccccCCCCCCCCCCCeEEEeeeeccCccchhh
Q 026036 140 AFPIPNPDWDLILASDILLYVKQYSNLIKSLSVLLKSYKPKDSQVGHLTKNEQGEGTEGLPWPAFLMSWRRRIGKEDETI 219 (244)
Q Consensus 140 ~~~~~~~~fD~I~~~~~l~~~~~~~~l~~~l~~~~~~lk~gG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 219 (244)
.+++.+++||+|+++.++++. . ..+.++++.++|||||++++............. ....|. ...+.. .+...
T Consensus 107 ~~~~~~~~fD~i~~~~~~~~~-~---~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~-~~~~~~-~~~~~~--~~~~~ 178 (267)
T 3kkz_A 107 DLPFRNEELDLIWSEGAIYNI-G---FERGLNEWRKYLKKGGYLAVSECSWFTDERPAE-INDFWM-DAYPEI--DTIPN 178 (267)
T ss_dssp SCCCCTTCEEEEEESSCGGGT-C---HHHHHHHHGGGEEEEEEEEEEEEEESSSCCCHH-HHHHHH-HHCTTC--EEHHH
T ss_pred hCCCCCCCEEEEEEcCCceec-C---HHHHHHHHHHHcCCCCEEEEEEeeecCCCChHH-HHHHHH-HhCCCC--CCHHH
Confidence 345556799999999999443 3 458999999999999999988554322110000 000000 000111 23578
Q ss_pred HHHHHhhcCCeEEEec
Q 026036 220 FFTSCENAGLEVKHLG 235 (244)
Q Consensus 220 ~~~~l~~~Gf~v~~~~ 235 (244)
+.++++++||+++++.
T Consensus 179 ~~~~l~~aGf~~v~~~ 194 (267)
T 3kkz_A 179 QVAKIHKAGYLPVATF 194 (267)
T ss_dssp HHHHHHHTTEEEEEEE
T ss_pred HHHHHHHCCCEEEEEE
Confidence 8899999999988764
|
| >2o57_A Putative sarcosine dimethylglycine methyltransferase; structural genomics, protein structure initiative, PSI-2; 1.95A {Galdieria sulphuraria} SCOP: c.66.1.18 | Back alignment and structure |
|---|
Probab=99.77 E-value=1.3e-18 Score=144.00 Aligned_cols=168 Identities=17% Similarity=0.231 Sum_probs=116.4
Q ss_pred hHHHHHHHHhhcc----CcccCCeEEEeCCCCcHHHHHHHHhCCCeEEEEeCChHHHHHHHHHhHHhcCCCCCcceEeee
Q 026036 61 GTFSFAEWLMHHR----EWIERRRCIELGSGTGALAIFLRKAMNLDITTSDYNDQEIEDNIAYNSTTNGITPALPHIKHS 136 (244)
Q Consensus 61 ~~~~l~~~~~~~~----~~~~~~~VLdlG~G~G~~~~~~a~~~~~~v~~~D~~~~~l~~~~~~~~~~~~~~~~~~~~~~~ 136 (244)
+...+.+.+.... ...++.+|||+|||+|..+..+++..+.+|+++|+++.++ +.++++....++..++..+..+
T Consensus 62 ~~~~~~~~l~~~l~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~~~~v~gvD~s~~~~-~~a~~~~~~~~~~~~~~~~~~d 140 (297)
T 2o57_A 62 ASLRTDEWLASELAMTGVLQRQAKGLDLGAGYGGAARFLVRKFGVSIDCLNIAPVQN-KRNEEYNNQAGLADNITVKYGS 140 (297)
T ss_dssp HHHHHHHHHHHHHHHTTCCCTTCEEEEETCTTSHHHHHHHHHHCCEEEEEESCHHHH-HHHHHHHHHHTCTTTEEEEECC
T ss_pred HHHHHHHHHHHHhhhccCCCCCCEEEEeCCCCCHHHHHHHHHhCCEEEEEeCCHHHH-HHHHHHHHhcCCCcceEEEEcC
Confidence 4455556665555 5668889999999999999999887677999999999987 7777777766665555555554
Q ss_pred cCCCCCCCCCCccEEEEcccccCCcChHHHHHHHHHHHHhcCCCCceEeecccccCCCCCCCCCCCeEEEeeeeccCccc
Q 026036 137 WGDAFPIPNPDWDLILASDILLYVKQYSNLIKSLSVLLKSYKPKDSQVGHLTKNEQGEGTEGLPWPAFLMSWRRRIGKED 216 (244)
Q Consensus 137 ~~~~~~~~~~~fD~I~~~~~l~~~~~~~~l~~~l~~~~~~lk~gG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 216 (244)
..+ +++.+++||+|++.+++++... ..+.++++.++|||||++++..+.......... ....+.....+... +
T Consensus 141 ~~~-~~~~~~~fD~v~~~~~l~~~~~---~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~--~ 213 (297)
T 2o57_A 141 FLE-IPCEDNSYDFIWSQDAFLHSPD---KLKVFQECARVLKPRGVMAITDPMKEDGIDKSS-IQPILDRIKLHDMG--S 213 (297)
T ss_dssp TTS-CSSCTTCEEEEEEESCGGGCSC---HHHHHHHHHHHEEEEEEEEEEEEEECTTCCGGG-GHHHHHHHTCSSCC--C
T ss_pred ccc-CCCCCCCEeEEEecchhhhcCC---HHHHHHHHHHHcCCCeEEEEEEeccCCCCchHH-HHHHHHHhcCCCCC--C
Confidence 433 4566779999999999955433 559999999999999999988654432211000 00000000011121 3
Q ss_pred hhhHHHHHhhcCCeEEEecc
Q 026036 217 ETIFFTSCENAGLEVKHLGS 236 (244)
Q Consensus 217 ~~~~~~~l~~~Gf~v~~~~~ 236 (244)
...+.++++++||+++++..
T Consensus 214 ~~~~~~~l~~aGf~~~~~~~ 233 (297)
T 2o57_A 214 LGLYRSLAKECGLVTLRTFS 233 (297)
T ss_dssp HHHHHHHHHHTTEEEEEEEE
T ss_pred HHHHHHHHHHCCCeEEEEEE
Confidence 57888999999999887753
|
| >1kpg_A CFA synthase;, cyclopropane-fatty-acyl-phospholipid synthase 1; mixed alpha beta fold, structural genomics, PSI; HET: SAH 16A; 2.00A {Mycobacterium tuberculosis} SCOP: c.66.1.18 PDB: 1kp9_A* 1kph_A* 1tpy_A* 1l1e_A* | Back alignment and structure |
|---|
Probab=99.77 E-value=2e-17 Score=136.23 Aligned_cols=168 Identities=9% Similarity=0.089 Sum_probs=114.4
Q ss_pred hHHHHHHHHhhccCcccCCeEEEeCCCCcHHHHHHHHhCCCeEEEEeCChHHHHHHHHHhHHhcCCCCCcceEeeecCCC
Q 026036 61 GTFSFAEWLMHHREWIERRRCIELGSGTGALAIFLRKAMNLDITTSDYNDQEIEDNIAYNSTTNGITPALPHIKHSWGDA 140 (244)
Q Consensus 61 ~~~~l~~~~~~~~~~~~~~~VLdlG~G~G~~~~~~a~~~~~~v~~~D~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 140 (244)
+...+.+.+.......++.+|||||||+|.++..+++..+.+|+++|+|+.++ +.++++....+...++..+..+..
T Consensus 48 a~~~~~~~~~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~~~~v~gvd~s~~~~-~~a~~~~~~~~~~~~~~~~~~d~~-- 124 (287)
T 1kpg_A 48 AQIAKIDLALGKLGLQPGMTLLDVGCGWGATMMRAVEKYDVNVVGLTLSKNQA-NHVQQLVANSENLRSKRVLLAGWE-- 124 (287)
T ss_dssp HHHHHHHHHHTTTTCCTTCEEEEETCTTSHHHHHHHHHHCCEEEEEESCHHHH-HHHHHHHHTCCCCSCEEEEESCGG--
T ss_pred HHHHHHHHHHHHcCCCCcCEEEEECCcccHHHHHHHHHcCCEEEEEECCHHHH-HHHHHHHHhcCCCCCeEEEECChh--
Confidence 44456667777666778899999999999999999866677999999999987 778877776665444444444432
Q ss_pred CCCCCCCccEEEEcccccCCcChHHHHHHHHHHHHhcCCCCceEeecccccCCCCCCCCCCCe---------EEEe---e
Q 026036 141 FPIPNPDWDLILASDILLYVKQYSNLIKSLSVLLKSYKPKDSQVGHLTKNEQGEGTEGLPWPA---------FLMS---W 208 (244)
Q Consensus 141 ~~~~~~~fD~I~~~~~l~~~~~~~~l~~~l~~~~~~lk~gG~~~~~~~~~~~~~~~~~~~~~~---------~~~~---~ 208 (244)
..+ ++||+|++..++ ++...++..+.++++.++|||||++++................+. ++.. .
T Consensus 125 -~~~-~~fD~v~~~~~l-~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 201 (287)
T 1kpg_A 125 -QFD-EPVDRIVSIGAF-EHFGHERYDAFFSLAHRLLPADGVMLLHTITGLHPKEIHERGLPMSFTFARFLKFIVTEIFP 201 (287)
T ss_dssp -GCC-CCCSEEEEESCG-GGTCTTTHHHHHHHHHHHSCTTCEEEEEEEEECCHHHHTTTTCSCHHHHHHHHHHHHHHTST
T ss_pred -hCC-CCeeEEEEeCch-hhcChHHHHHHHHHHHHhcCCCCEEEEEEecCCCccccccccccccccccchhhhHHheeCC
Confidence 222 789999999998 443335566999999999999999998854432211000000000 0000 0
Q ss_pred eeccCccchhhHHHHHhhcCCeEEEecc
Q 026036 209 RRRIGKEDETIFFTSCENAGLEVKHLGS 236 (244)
Q Consensus 209 ~~~~~~~~~~~~~~~l~~~Gf~v~~~~~ 236 (244)
.... .+.+++.++++++||+++++..
T Consensus 202 ~~~~--~s~~~~~~~l~~aGf~~~~~~~ 227 (287)
T 1kpg_A 202 GGRL--PSIPMVQECASANGFTVTRVQS 227 (287)
T ss_dssp TCCC--CCHHHHHHHHHTTTCEEEEEEE
T ss_pred CCCC--CCHHHHHHHHHhCCcEEEEEEe
Confidence 0011 1357889999999999988753
|
| >1xtp_A LMAJ004091AAA; SGPP, structural genomics, PSI, protein structure initiative dependent methyltransferase; HET: SAI; 1.94A {Leishmania major} SCOP: c.66.1.42 | Back alignment and structure |
|---|
Probab=99.75 E-value=1e-17 Score=135.32 Aligned_cols=153 Identities=12% Similarity=0.101 Sum_probs=105.0
Q ss_pred HhhccCcccCCeEEEeCCCCcHHHHHHHHhCCCeEEEEeCChHHHHHHHHHhHHhcCCCCCcceEeeecCCCCCCCCCCc
Q 026036 69 LMHHREWIERRRCIELGSGTGALAIFLRKAMNLDITTSDYNDQEIEDNIAYNSTTNGITPALPHIKHSWGDAFPIPNPDW 148 (244)
Q Consensus 69 ~~~~~~~~~~~~VLdlG~G~G~~~~~~a~~~~~~v~~~D~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f 148 (244)
+.......++.+|||||||+|.++..++..+..+|+++|+++.++ +.++++.... .++..+..+..+ +++.+++|
T Consensus 85 ~l~~l~~~~~~~vLDiG~G~G~~~~~l~~~~~~~v~~vD~s~~~~-~~a~~~~~~~---~~~~~~~~d~~~-~~~~~~~f 159 (254)
T 1xtp_A 85 FIASLPGHGTSRALDCGAGIGRITKNLLTKLYATTDLLEPVKHML-EEAKRELAGM---PVGKFILASMET-ATLPPNTY 159 (254)
T ss_dssp HHHTSTTCCCSEEEEETCTTTHHHHHTHHHHCSEEEEEESCHHHH-HHHHHHTTTS---SEEEEEESCGGG-CCCCSSCE
T ss_pred HHHhhcccCCCEEEEECCCcCHHHHHHHHhhcCEEEEEeCCHHHH-HHHHHHhccC---CceEEEEccHHH-CCCCCCCe
Confidence 333444557889999999999999998887677899999999987 7777665432 223333333322 34556789
Q ss_pred cEEEEcccccCCcChHHHHHHHHHHHHhcCCCCceEeecccccCCCCCCCCCCCeEEEeeeeccCccchhhHHHHHhhcC
Q 026036 149 DLILASDILLYVKQYSNLIKSLSVLLKSYKPKDSQVGHLTKNEQGEGTEGLPWPAFLMSWRRRIGKEDETIFFTSCENAG 228 (244)
Q Consensus 149 D~I~~~~~l~~~~~~~~l~~~l~~~~~~lk~gG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~G 228 (244)
|+|++..++ ++...+++.+.++++.++|||||++++......... +...........+.+.+.++++++|
T Consensus 160 D~v~~~~~l-~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~~~~~~~---------~~~~~~~~~~~~~~~~~~~~l~~aG 229 (254)
T 1xtp_A 160 DLIVIQWTA-IYLTDADFVKFFKHCQQALTPNGYIFFKENCSTGDR---------FLVDKEDSSLTRSDIHYKRLFNESG 229 (254)
T ss_dssp EEEEEESCG-GGSCHHHHHHHHHHHHHHEEEEEEEEEEEEBC--CC---------EEEETTTTEEEBCHHHHHHHHHHHT
T ss_pred EEEEEcchh-hhCCHHHHHHHHHHHHHhcCCCeEEEEEecCCCccc---------ceecccCCcccCCHHHHHHHHHHCC
Confidence 999999998 444436678999999999999999998854322111 1111110000113578899999999
Q ss_pred CeEEEecc
Q 026036 229 LEVKHLGS 236 (244)
Q Consensus 229 f~v~~~~~ 236 (244)
|+++++..
T Consensus 230 f~~~~~~~ 237 (254)
T 1xtp_A 230 VRVVKEAF 237 (254)
T ss_dssp CCEEEEEE
T ss_pred CEEEEeee
Confidence 99987753
|
| >3dlc_A Putative S-adenosyl-L-methionine-dependent methyltransferase; structural genomics, joint center for structural genomics; HET: MSE SAM; 1.15A {Methanococcus maripaludis} | Back alignment and structure |
|---|
Probab=99.75 E-value=1.3e-18 Score=137.28 Aligned_cols=169 Identities=17% Similarity=0.197 Sum_probs=112.3
Q ss_pred hHHHHHHHHhhccCcccCCeEEEeCCCCcHHHHHHHHhCCCeEEEEeCChHHHHHHHHHhHHhcCCCCCcceEeeecCCC
Q 026036 61 GTFSFAEWLMHHREWIERRRCIELGSGTGALAIFLRKAMNLDITTSDYNDQEIEDNIAYNSTTNGITPALPHIKHSWGDA 140 (244)
Q Consensus 61 ~~~~l~~~~~~~~~~~~~~~VLdlG~G~G~~~~~~a~~~~~~v~~~D~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 140 (244)
....+++.+.......++ +|||+|||+|.++..+++..+.+|+++|+++.++ +.++++....+...++..+..+..+
T Consensus 28 ~~~~~~~~~~~~~~~~~~-~vLdiG~G~G~~~~~l~~~~~~~v~~~D~s~~~~-~~a~~~~~~~~~~~~~~~~~~d~~~- 104 (219)
T 3dlc_A 28 IYPIIAENIINRFGITAG-TCIDIGSGPGALSIALAKQSDFSIRALDFSKHMN-EIALKNIADANLNDRIQIVQGDVHN- 104 (219)
T ss_dssp HHHHHHHHHHHHHCCCEE-EEEEETCTTSHHHHHHHHHSEEEEEEEESCHHHH-HHHHHHHHHTTCTTTEEEEECBTTB-
T ss_pred ccHHHHHHHHHhcCCCCC-EEEEECCCCCHHHHHHHHcCCCeEEEEECCHHHH-HHHHHHHHhccccCceEEEEcCHHH-
Confidence 444556666555554455 9999999999999999887677999999999987 8888888777765555555555533
Q ss_pred CCCCCCCccEEEEcccccCCcChHHHHHHHHHHHHhcCCCCceEeecccccCCCC-----CCCCCCCeEEEeeeeccCcc
Q 026036 141 FPIPNPDWDLILASDILLYVKQYSNLIKSLSVLLKSYKPKDSQVGHLTKNEQGEG-----TEGLPWPAFLMSWRRRIGKE 215 (244)
Q Consensus 141 ~~~~~~~fD~I~~~~~l~~~~~~~~l~~~l~~~~~~lk~gG~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~ 215 (244)
+++.+++||+|+++.++++. ++....++++.+.|||||++++.......... ......+.|...........
T Consensus 105 ~~~~~~~~D~v~~~~~l~~~---~~~~~~l~~~~~~L~pgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 181 (219)
T 3dlc_A 105 IPIEDNYADLIVSRGSVFFW---EDVATAFREIYRILKSGGKTYIGGGFGNKELRDSISAEMIRKNPDWKEFNRKNISQE 181 (219)
T ss_dssp CSSCTTCEEEEEEESCGGGC---SCHHHHHHHHHHHEEEEEEEEEEECCSSHHHHHHHHHHHHHHCTTHHHHHHHHSSHH
T ss_pred CCCCcccccEEEECchHhhc---cCHHHHHHHHHHhCCCCCEEEEEeccCcHHHHHHHHHHHHHhHHHHHhhhhhccccC
Confidence 45566799999999999554 44558999999999999998886322111000 00000000110000111122
Q ss_pred chhhHHHHHhhcCCeEEEec
Q 026036 216 DETIFFTSCENAGLEVKHLG 235 (244)
Q Consensus 216 ~~~~~~~~l~~~Gf~v~~~~ 235 (244)
+.+++.++++++||+++++.
T Consensus 182 ~~~~~~~~l~~aGf~~v~~~ 201 (219)
T 3dlc_A 182 NVERFQNVLDEIGISSYEII 201 (219)
T ss_dssp HHHHHHHHHHHHTCSSEEEE
T ss_pred CHHHHHHHHHHcCCCeEEEE
Confidence 34788899999999766553
|
| >1vl5_A Unknown conserved protein BH2331; putative methyltransferase, structural genomics, joint cente structural genomics, JCSG; HET: MSE; 1.95A {Bacillus halodurans} SCOP: c.66.1.41 | Back alignment and structure |
|---|
Probab=99.75 E-value=3.4e-17 Score=132.97 Aligned_cols=157 Identities=10% Similarity=0.044 Sum_probs=105.0
Q ss_pred cccCCeEEEeCCCCcHHHHHHHHhCCCeEEEEeCChHHHHHHHHHhHHhcCCCCCcceEeeecCCCCCCCCCCccEEEEc
Q 026036 75 WIERRRCIELGSGTGALAIFLRKAMNLDITTSDYNDQEIEDNIAYNSTTNGITPALPHIKHSWGDAFPIPNPDWDLILAS 154 (244)
Q Consensus 75 ~~~~~~VLdlG~G~G~~~~~~a~~~~~~v~~~D~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fD~I~~~ 154 (244)
..++.+|||||||+|.++..++..+ .+|+++|+|+.++ +.++++....+.+ ++..+..+. ..+++.+++||+|+++
T Consensus 35 ~~~~~~vLDiGcG~G~~~~~l~~~~-~~v~gvD~s~~~l-~~a~~~~~~~~~~-~v~~~~~d~-~~l~~~~~~fD~V~~~ 110 (260)
T 1vl5_A 35 LKGNEEVLDVATGGGHVANAFAPFV-KKVVAFDLTEDIL-KVARAFIEGNGHQ-QVEYVQGDA-EQMPFTDERFHIVTCR 110 (260)
T ss_dssp CCSCCEEEEETCTTCHHHHHHGGGS-SEEEEEESCHHHH-HHHHHHHHHTTCC-SEEEEECCC--CCCSCTTCEEEEEEE
T ss_pred CCCCCEEEEEeCCCCHHHHHHHHhC-CEEEEEeCCHHHH-HHHHHHHHhcCCC-ceEEEEecH-HhCCCCCCCEEEEEEh
Confidence 3477899999999999999998774 5999999999997 7777777666552 333443333 2345667899999999
Q ss_pred ccccCCcChHHHHHHHHHHHHhcCCCCceEeecccccCCC--CCCCCCCCeEEEeeeeccCccchhhHHHHHhhcCCeEE
Q 026036 155 DILLYVKQYSNLIKSLSVLLKSYKPKDSQVGHLTKNEQGE--GTEGLPWPAFLMSWRRRIGKEDETIFFTSCENAGLEVK 232 (244)
Q Consensus 155 ~~l~~~~~~~~l~~~l~~~~~~lk~gG~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gf~v~ 232 (244)
.++++.. +....++++.++|||||++++......... ................+. .+..++.++++++||+++
T Consensus 111 ~~l~~~~---d~~~~l~~~~r~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~l~~aGf~~~ 185 (260)
T 1vl5_A 111 IAAHHFP---NPASFVSEAYRVLKKGGQLLLVDNSAPENDAFDVFYNYVEKERDYSHHRA--WKKSDWLKMLEEAGFELE 185 (260)
T ss_dssp SCGGGCS---CHHHHHHHHHHHEEEEEEEEEEEEEBCSSHHHHHHHHHHHHHHCTTCCCC--CBHHHHHHHHHHHTCEEE
T ss_pred hhhHhcC---CHHHHHHHHHHHcCCCCEEEEEEcCCCCCHHHHHHHHHHHHhcCccccCC--CCHHHHHHHHHHCCCeEE
Confidence 9994443 445999999999999999988743322210 000000000000000111 235788999999999998
Q ss_pred EeccEEEE
Q 026036 233 HLGSRVYC 240 (244)
Q Consensus 233 ~~~~~~~~ 240 (244)
.+....+.
T Consensus 186 ~~~~~~~~ 193 (260)
T 1vl5_A 186 ELHCFHKT 193 (260)
T ss_dssp EEEEEEEE
T ss_pred EEEEeecc
Confidence 87765543
|
| >3dh0_A SAM dependent methyltransferase; cystal structure, PSI-2, NYSGXRC, structural genomics, protein structure initiative; HET: SAM; 2.72A {Aquifex aeolicus} | Back alignment and structure |
|---|
Probab=99.75 E-value=1.9e-17 Score=130.99 Aligned_cols=144 Identities=18% Similarity=0.171 Sum_probs=104.0
Q ss_pred CcccCCeEEEeCCCCcHHHHHHHHhC--CCeEEEEeCChHHHHHHHHHhHHhcCCCCCcceEeeecCCCCCCCCCCccEE
Q 026036 74 EWIERRRCIELGSGTGALAIFLRKAM--NLDITTSDYNDQEIEDNIAYNSTTNGITPALPHIKHSWGDAFPIPNPDWDLI 151 (244)
Q Consensus 74 ~~~~~~~VLdlG~G~G~~~~~~a~~~--~~~v~~~D~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fD~I 151 (244)
...++.+|||+|||+|.++..+++.+ ..+|+++|+++.++ +.++++...++++ ++..+..+.. ..+..+++||+|
T Consensus 34 ~~~~~~~vLDiG~G~G~~~~~l~~~~~~~~~v~~vD~s~~~~-~~a~~~~~~~~~~-~~~~~~~d~~-~~~~~~~~fD~v 110 (219)
T 3dh0_A 34 GLKEGMTVLDVGTGAGFYLPYLSKMVGEKGKVYAIDVQEEMV-NYAWEKVNKLGLK-NVEVLKSEEN-KIPLPDNTVDFI 110 (219)
T ss_dssp TCCTTCEEEESSCTTCTTHHHHHHHHTTTCEEEEEESCHHHH-HHHHHHHHHHTCT-TEEEEECBTT-BCSSCSSCEEEE
T ss_pred CCCCCCEEEEEecCCCHHHHHHHHHhCCCcEEEEEECCHHHH-HHHHHHHHHcCCC-cEEEEecccc-cCCCCCCCeeEE
Confidence 44577899999999999999998875 47999999999987 7888877766653 3444444432 234556789999
Q ss_pred EEcccccCCcChHHHHHHHHHHHHhcCCCCceEeecccccCCCCCCCCCCCeEEEeeeeccCccchhhHHHHHhhcCCeE
Q 026036 152 LASDILLYVKQYSNLIKSLSVLLKSYKPKDSQVGHLTKNEQGEGTEGLPWPAFLMSWRRRIGKEDETIFFTSCENAGLEV 231 (244)
Q Consensus 152 ~~~~~l~~~~~~~~l~~~l~~~~~~lk~gG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gf~v 231 (244)
+++.++++. ++....++++.++|||||++++............ .+...+ +.+++.++++++||++
T Consensus 111 ~~~~~l~~~---~~~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~---------~~~~~~---~~~~~~~~l~~~Gf~~ 175 (219)
T 3dh0_A 111 FMAFTFHEL---SEPLKFLEELKRVAKPFAYLAIIDWKKEERDKGP---------PPEEVY---SEWEVGLILEDAGIRV 175 (219)
T ss_dssp EEESCGGGC---SSHHHHHHHHHHHEEEEEEEEEEEECSSCCSSSC---------CGGGSC---CHHHHHHHHHHTTCEE
T ss_pred Eeehhhhhc---CCHHHHHHHHHHHhCCCeEEEEEEecccccccCC---------chhccc---CHHHHHHHHHHCCCEE
Confidence 999999544 3445899999999999999988744332221000 011112 3588999999999998
Q ss_pred EEec
Q 026036 232 KHLG 235 (244)
Q Consensus 232 ~~~~ 235 (244)
+.+.
T Consensus 176 ~~~~ 179 (219)
T 3dh0_A 176 GRVV 179 (219)
T ss_dssp EEEE
T ss_pred EEEE
Confidence 7653
|
| >3sm3_A SAM-dependent methyltransferases; NESG, structural genomics, PSI-biology, protein structure in northeast structural genomics; 2.20A {Methanosarcina mazei} | Back alignment and structure |
|---|
Probab=99.75 E-value=1.8e-17 Score=132.10 Aligned_cols=161 Identities=12% Similarity=0.122 Sum_probs=109.4
Q ss_pred cCCeEEEeCCCCcHHHHHHHHhCCCeEEEEeCChHHHHHHHHHhHHhcCCCCC-cceEeeecCC--CCCCCCCCccEEEE
Q 026036 77 ERRRCIELGSGTGALAIFLRKAMNLDITTSDYNDQEIEDNIAYNSTTNGITPA-LPHIKHSWGD--AFPIPNPDWDLILA 153 (244)
Q Consensus 77 ~~~~VLdlG~G~G~~~~~~a~~~~~~v~~~D~~~~~l~~~~~~~~~~~~~~~~-~~~~~~~~~~--~~~~~~~~fD~I~~ 153 (244)
++.+|||+|||+|.++..++.. +.+|+++|+++.++ +.++++...++.... ...+.+...+ .+++..++||+|++
T Consensus 30 ~~~~vLdiG~G~G~~~~~l~~~-~~~v~~vD~s~~~~-~~a~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~D~v~~ 107 (235)
T 3sm3_A 30 EDDEILDIGCGSGKISLELASK-GYSVTGIDINSEAI-RLAETAARSPGLNQKTGGKAEFKVENASSLSFHDSSFDFAVM 107 (235)
T ss_dssp TTCEEEEETCTTSHHHHHHHHT-TCEEEEEESCHHHH-HHHHHHTTCCSCCSSSSCEEEEEECCTTSCCSCTTCEEEEEE
T ss_pred CCCeEEEECCCCCHHHHHHHhC-CCeEEEEECCHHHH-HHHHHHHHhcCCccccCcceEEEEecccccCCCCCceeEEEE
Confidence 6789999999999999999887 77999999999987 778777766554211 1123333333 23455678999999
Q ss_pred cccccCCcChHHHHHHHHHHHHhcCCCCceEeecccccCCCCC----------CCCCCCeEEE--------eeeeccCcc
Q 026036 154 SDILLYVKQYSNLIKSLSVLLKSYKPKDSQVGHLTKNEQGEGT----------EGLPWPAFLM--------SWRRRIGKE 215 (244)
Q Consensus 154 ~~~l~~~~~~~~l~~~l~~~~~~lk~gG~~~~~~~~~~~~~~~----------~~~~~~~~~~--------~~~~~~~~~ 215 (244)
+.++++........++++++.+.|||||++++........... .......+.. ....+..
T Consensus 108 ~~~l~~~~~~~~~~~~l~~~~~~L~pgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-- 185 (235)
T 3sm3_A 108 QAFLTSVPDPKERSRIIKEVFRVLKPGAYLYLVEFGQNWHLKLYRKRYLHDFPITKEEGSFLARDPETGETEFIAHHF-- 185 (235)
T ss_dssp ESCGGGCCCHHHHHHHHHHHHHHEEEEEEEEEEEEBCCTTSHHHHHHHHHHHHHHCSTTEEEEECTTTCCEEEEEECB--
T ss_pred cchhhcCCCHHHHHHHHHHHHHHcCCCeEEEEEECCcchhHHHHHHHhhhhccchhhhcceEecccccCCcceeeEeC--
Confidence 9999665555666689999999999999999885433211100 0000001111 1112222
Q ss_pred chhhHHHHHhhcCCeEEEeccEEEEE
Q 026036 216 DETIFFTSCENAGLEVKHLGSRVYCI 241 (244)
Q Consensus 216 ~~~~~~~~l~~~Gf~v~~~~~~~~~~ 241 (244)
+.+++.++++++||+++.+....+..
T Consensus 186 ~~~~l~~ll~~aGf~~~~~~~~~~~~ 211 (235)
T 3sm3_A 186 TEKELVFLLTDCRFEIDYFRVKELET 211 (235)
T ss_dssp CHHHHHHHHHTTTEEEEEEEEEEEEC
T ss_pred CHHHHHHHHHHcCCEEEEEEecceee
Confidence 25899999999999999987665543
|
| >3g5l_A Putative S-adenosylmethionine dependent methyltransferase; structural genomics, PSI-2, protein structure initiative; 2.35A {Listeria monocytogenes str} | Back alignment and structure |
|---|
Probab=99.75 E-value=3.4e-17 Score=132.39 Aligned_cols=157 Identities=13% Similarity=0.143 Sum_probs=104.7
Q ss_pred HhhccCcccCCeEEEeCCCCcHHHHHHHHhCCCeEEEEeCChHHHHHHHHHhHHhcCCCCCcceEeeecCCCCCCCCCCc
Q 026036 69 LMHHREWIERRRCIELGSGTGALAIFLRKAMNLDITTSDYNDQEIEDNIAYNSTTNGITPALPHIKHSWGDAFPIPNPDW 148 (244)
Q Consensus 69 ~~~~~~~~~~~~VLdlG~G~G~~~~~~a~~~~~~v~~~D~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f 148 (244)
+.......++.+|||||||+|.++..+++.+..+|+++|+++.++ +.++++.. ..++..+..+.. .+++.+++|
T Consensus 36 l~~~~~~~~~~~vLD~GcG~G~~~~~l~~~~~~~v~~vD~s~~~~-~~a~~~~~----~~~~~~~~~d~~-~~~~~~~~f 109 (253)
T 3g5l_A 36 LKKMLPDFNQKTVLDLGCGFGWHCIYAAEHGAKKVLGIDLSERML-TEAKRKTT----SPVVCYEQKAIE-DIAIEPDAY 109 (253)
T ss_dssp HHTTCCCCTTCEEEEETCTTCHHHHHHHHTTCSEEEEEESCHHHH-HHHHHHCC----CTTEEEEECCGG-GCCCCTTCE
T ss_pred HHHhhhccCCCEEEEECCCCCHHHHHHHHcCCCEEEEEECCHHHH-HHHHHhhc----cCCeEEEEcchh-hCCCCCCCe
Confidence 444445557889999999999999999888655999999999987 66766544 123344444432 345556799
Q ss_pred cEEEEcccccCCcChHHHHHHHHHHHHhcCCCCceEeecccccCCCC-------------------CCCCCCCe---EEE
Q 026036 149 DLILASDILLYVKQYSNLIKSLSVLLKSYKPKDSQVGHLTKNEQGEG-------------------TEGLPWPA---FLM 206 (244)
Q Consensus 149 D~I~~~~~l~~~~~~~~l~~~l~~~~~~lk~gG~~~~~~~~~~~~~~-------------------~~~~~~~~---~~~ 206 (244)
|+|+++.++++. ++..++++++.++|||||++++.+........ ..+..... |..
T Consensus 110 D~v~~~~~l~~~---~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 186 (253)
T 3g5l_A 110 NVVLSSLALHYI---ASFDDICKKVYINLKSSGSFIFSVEHPVFTADGRQDWYTDETGNKLHWPVDRYFNESMRTSHFLG 186 (253)
T ss_dssp EEEEEESCGGGC---SCHHHHHHHHHHHEEEEEEEEEEEECHHHHSSSSCSCEECSSCCEEEEEECCTTCCCEEEEEETT
T ss_pred EEEEEchhhhhh---hhHHHHHHHHHHHcCCCcEEEEEeCCCccccCccccceeccCCceEEEEeccccccceEEEeecc
Confidence 999999998443 44569999999999999999987433211000 00000000 000
Q ss_pred -eeeeccCccchhhHHHHHhhcCCeEEEecc
Q 026036 207 -SWRRRIGKEDETIFFTSCENAGLEVKHLGS 236 (244)
Q Consensus 207 -~~~~~~~~~~~~~~~~~l~~~Gf~v~~~~~ 236 (244)
...... .+.+++.++++++||+++.+.+
T Consensus 187 ~~~~~~~--~t~~~~~~~l~~aGF~~~~~~e 215 (253)
T 3g5l_A 187 EDVQKYH--RTVTTYIQTLLKNGFQINSVIE 215 (253)
T ss_dssp EEEEEEC--CCHHHHHHHHHHTTEEEEEEEC
T ss_pred ccCccEe--cCHHHHHHHHHHcCCeeeeeec
Confidence 000111 1358899999999999998865
|
| >4htf_A S-adenosylmethionine-dependent methyltransferase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG; HET: MSE SAM; 1.60A {Escherichia coli} | Back alignment and structure |
|---|
Probab=99.75 E-value=7.1e-18 Score=138.88 Aligned_cols=154 Identities=19% Similarity=0.206 Sum_probs=104.6
Q ss_pred cCCeEEEeCCCCcHHHHHHHHhCCCeEEEEeCChHHHHHHHHHhHHhcCCCCCcceEeeecCCCCCCCCCCccEEEEccc
Q 026036 77 ERRRCIELGSGTGALAIFLRKAMNLDITTSDYNDQEIEDNIAYNSTTNGITPALPHIKHSWGDAFPIPNPDWDLILASDI 156 (244)
Q Consensus 77 ~~~~VLdlG~G~G~~~~~~a~~~~~~v~~~D~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fD~I~~~~~ 156 (244)
++.+|||||||+|.++..++.. +.+|+++|+++.++ +.++++....++..++..+..+..+..++.+++||+|+++.+
T Consensus 68 ~~~~vLDiGcG~G~~~~~l~~~-~~~v~gvD~s~~~~-~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~fD~v~~~~~ 145 (285)
T 4htf_A 68 QKLRVLDAGGGEGQTAIKMAER-GHQVILCDLSAQMI-DRAKQAAEAKGVSDNMQFIHCAAQDVASHLETPVDLILFHAV 145 (285)
T ss_dssp SCCEEEEETCTTCHHHHHHHHT-TCEEEEEESCHHHH-HHHHHHHHC-CCGGGEEEEESCGGGTGGGCSSCEEEEEEESC
T ss_pred CCCEEEEeCCcchHHHHHHHHC-CCEEEEEECCHHHH-HHHHHHHHhcCCCcceEEEEcCHHHhhhhcCCCceEEEECch
Confidence 4679999999999999999887 78999999999987 788888777666444555555554433355679999999999
Q ss_pred ccCCcChHHHHHHHHHHHHhcCCCCceEeecccccCCC------C---CCCCCCCe-EEEeeeeccCccchhhHHHHHhh
Q 026036 157 LLYVKQYSNLIKSLSVLLKSYKPKDSQVGHLTKNEQGE------G---TEGLPWPA-FLMSWRRRIGKEDETIFFTSCEN 226 (244)
Q Consensus 157 l~~~~~~~~l~~~l~~~~~~lk~gG~~~~~~~~~~~~~------~---~~~~~~~~-~~~~~~~~~~~~~~~~~~~~l~~ 226 (244)
+++. ++..++++++.++|||||++++..+...... . ......+. ......... ..+.+++.+++++
T Consensus 146 l~~~---~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~l~~~l~~ 221 (285)
T 4htf_A 146 LEWV---ADPRSVLQTLWSVLRPGGVLSLMFYNAHGLLMHNMVAGNFDYVQAGMPKKKKRTLSPDY-PRDPTQVYLWLEE 221 (285)
T ss_dssp GGGC---SCHHHHHHHHHHTEEEEEEEEEEEEBHHHHHHHHHHTTCHHHHHTTCCCC----CCCSC-CBCHHHHHHHHHH
T ss_pred hhcc---cCHHHHHHHHHHHcCCCeEEEEEEeCCchHHHHHHHhcCHHHHhhhccccccccCCCCC-CCCHHHHHHHHHH
Confidence 9444 3445899999999999999998854322100 0 00000000 000011111 1235889999999
Q ss_pred cCCeEEEecc
Q 026036 227 AGLEVKHLGS 236 (244)
Q Consensus 227 ~Gf~v~~~~~ 236 (244)
+||+++++..
T Consensus 222 aGf~v~~~~~ 231 (285)
T 4htf_A 222 AGWQIMGKTG 231 (285)
T ss_dssp TTCEEEEEEE
T ss_pred CCCceeeeee
Confidence 9999987754
|
| >3dtn_A Putative methyltransferase MM_2633; structural genomics, unknown function, PSI-2, protein structure initiative; 2.09A {Methanosarcina mazei} | Back alignment and structure |
|---|
Probab=99.74 E-value=2.3e-17 Score=131.81 Aligned_cols=156 Identities=12% Similarity=0.083 Sum_probs=103.6
Q ss_pred cccCCeEEEeCCCCcHHHHHHHHhC-CCeEEEEeCChHHHHHHHHHhHHhcCCCCCcceEeeecCCCCCCCCCCccEEEE
Q 026036 75 WIERRRCIELGSGTGALAIFLRKAM-NLDITTSDYNDQEIEDNIAYNSTTNGITPALPHIKHSWGDAFPIPNPDWDLILA 153 (244)
Q Consensus 75 ~~~~~~VLdlG~G~G~~~~~~a~~~-~~~v~~~D~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fD~I~~ 153 (244)
..++.+|||+|||+|..+..++... +.+|+++|+++.++ +.++++....+ ++..+..+..+ .+.. ++||+|++
T Consensus 42 ~~~~~~vLDiG~G~G~~~~~l~~~~~~~~v~~vD~s~~~~-~~a~~~~~~~~---~~~~~~~d~~~-~~~~-~~fD~v~~ 115 (234)
T 3dtn_A 42 DTENPDILDLGAGTGLLSAFLMEKYPEATFTLVDMSEKML-EIAKNRFRGNL---KVKYIEADYSK-YDFE-EKYDMVVS 115 (234)
T ss_dssp SCSSCEEEEETCTTSHHHHHHHHHCTTCEEEEEESCHHHH-HHHHHHTCSCT---TEEEEESCTTT-CCCC-SCEEEEEE
T ss_pred CCCCCeEEEecCCCCHHHHHHHHhCCCCeEEEEECCHHHH-HHHHHhhccCC---CEEEEeCchhc-cCCC-CCceEEEE
Confidence 4577899999999999999998886 78999999999987 77776654332 33444433322 2333 78999999
Q ss_pred cccccCCcChHHHHHHHHHHHHhcCCCCceEeecccccCCCC---------------CCCCCC---CeEEEeeeeccCcc
Q 026036 154 SDILLYVKQYSNLIKSLSVLLKSYKPKDSQVGHLTKNEQGEG---------------TEGLPW---PAFLMSWRRRIGKE 215 (244)
Q Consensus 154 ~~~l~~~~~~~~l~~~l~~~~~~lk~gG~~~~~~~~~~~~~~---------------~~~~~~---~~~~~~~~~~~~~~ 215 (244)
+.++ ++...+.....++++.++|||||++++.......... ...... ..+......+. .
T Consensus 116 ~~~l-~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~ 192 (234)
T 3dtn_A 116 ALSI-HHLEDEDKKELYKRSYSILKESGIFINADLVHGETAFIENLNKTIWRQYVENSGLTEEEIAAGYERSKLDKD--I 192 (234)
T ss_dssp ESCG-GGSCHHHHHHHHHHHHHHEEEEEEEEEEEECBCSSHHHHHHHHHHHHHHHHTSSCCHHHHHTTC----CCCC--C
T ss_pred eCcc-ccCCHHHHHHHHHHHHHhcCCCcEEEEEEecCCCChhhhhHHHHHHHHHHHhcCCCHHHHHHHHHhcccccc--c
Confidence 9998 4445555567999999999999999987433322100 000000 00000011111 2
Q ss_pred chhhHHHHHhhcCCeEEEeccEEE
Q 026036 216 DETIFFTSCENAGLEVKHLGSRVY 239 (244)
Q Consensus 216 ~~~~~~~~l~~~Gf~v~~~~~~~~ 239 (244)
+.+++.++++++||+++++.-+.+
T Consensus 193 ~~~~~~~ll~~aGF~~v~~~~~~~ 216 (234)
T 3dtn_A 193 EMNQQLNWLKEAGFRDVSCIYKYY 216 (234)
T ss_dssp BHHHHHHHHHHTTCEEEEEEEEET
T ss_pred CHHHHHHHHHHcCCCceeeeeeec
Confidence 357888999999999988765543
|
| >1xxl_A YCGJ protein; structural genomics, protein structure initiative, PSI, NEW YORK SGX research center for structural genomics, nysgxrc; 2.10A {Bacillus subtilis} SCOP: c.66.1.41 PDB: 2glu_A* | Back alignment and structure |
|---|
Probab=99.74 E-value=8.7e-17 Score=129.12 Aligned_cols=170 Identities=9% Similarity=0.059 Sum_probs=113.6
Q ss_pred eechHHHHHHHHhhccCcccCCeEEEeCCCCcHHHHHHHHhCCCeEEEEeCChHHHHHHHHHhHHhcCCCCCcceEeeec
Q 026036 58 LWPGTFSFAEWLMHHREWIERRRCIELGSGTGALAIFLRKAMNLDITTSDYNDQEIEDNIAYNSTTNGITPALPHIKHSW 137 (244)
Q Consensus 58 ~w~~~~~l~~~~~~~~~~~~~~~VLdlG~G~G~~~~~~a~~~~~~v~~~D~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~ 137 (244)
-||....+.+.+ ...++.+|||+|||+|.++..++.. ..+|+++|+++.++ +.++++...++.+ ++..+..+.
T Consensus 6 ~~~~~~~~~~~~----~~~~~~~vLDiGcG~G~~~~~l~~~-~~~v~~vD~s~~~~-~~a~~~~~~~~~~-~v~~~~~d~ 78 (239)
T 1xxl_A 6 HHHSLGLMIKTA----ECRAEHRVLDIGAGAGHTALAFSPY-VQECIGVDATKEMV-EVASSFAQEKGVE-NVRFQQGTA 78 (239)
T ss_dssp CHHHHHHHHHHH----TCCTTCEEEEESCTTSHHHHHHGGG-SSEEEEEESCHHHH-HHHHHHHHHHTCC-SEEEEECBT
T ss_pred cCCCcchHHHHh----CcCCCCEEEEEccCcCHHHHHHHHh-CCEEEEEECCHHHH-HHHHHHHHHcCCC-CeEEEeccc
Confidence 456666666654 4557889999999999999999877 46999999999987 7777777666552 334444444
Q ss_pred CCCCCCCCCCccEEEEcccccCCcChHHHHHHHHHHHHhcCCCCceEeecccccCCC--CCCCCCCCeEEEeeeeccCcc
Q 026036 138 GDAFPIPNPDWDLILASDILLYVKQYSNLIKSLSVLLKSYKPKDSQVGHLTKNEQGE--GTEGLPWPAFLMSWRRRIGKE 215 (244)
Q Consensus 138 ~~~~~~~~~~fD~I~~~~~l~~~~~~~~l~~~l~~~~~~lk~gG~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~ 215 (244)
..+++.+++||+|+++.++++.. +....++++.++|||||++++......... ................+. .
T Consensus 79 -~~~~~~~~~fD~v~~~~~l~~~~---~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~ 152 (239)
T 1xxl_A 79 -ESLPFPDDSFDIITCRYAAHHFS---DVRKAVREVARVLKQDGRFLLVDHYAPEDPVLDEFVNHLNRLRDPSHVRE--S 152 (239)
T ss_dssp -TBCCSCTTCEEEEEEESCGGGCS---CHHHHHHHHHHHEEEEEEEEEEEECBCSSHHHHHHHHHHHHHHCTTCCCC--C
T ss_pred -ccCCCCCCcEEEEEECCchhhcc---CHHHHHHHHHHHcCCCcEEEEEEcCCCCChhHHHHHHHHHHhccccccCC--C
Confidence 23456667999999999995543 445899999999999999988744332210 000000000000000111 2
Q ss_pred chhhHHHHHhhcCCeEEEeccEEEE
Q 026036 216 DETIFFTSCENAGLEVKHLGSRVYC 240 (244)
Q Consensus 216 ~~~~~~~~l~~~Gf~v~~~~~~~~~ 240 (244)
+..++.++++++||+++.+....+.
T Consensus 153 ~~~~~~~ll~~aGf~~~~~~~~~~~ 177 (239)
T 1xxl_A 153 SLSEWQAMFSANQLAYQDIQKWNLP 177 (239)
T ss_dssp BHHHHHHHHHHTTEEEEEEEEEEEE
T ss_pred CHHHHHHHHHHCCCcEEEEEeecCc
Confidence 3578999999999998887765443
|
| >2ex4_A Adrenal gland protein AD-003; methyltransferase, structural genomics, SGC, structural genomics consortium; HET: SAH; 1.75A {Homo sapiens} SCOP: c.66.1.42 | Back alignment and structure |
|---|
Probab=99.74 E-value=1.5e-17 Score=133.72 Aligned_cols=145 Identities=14% Similarity=0.080 Sum_probs=101.1
Q ss_pred cCCeEEEeCCCCcHHHHHHHHhCCCeEEEEeCChHHHHHHHHHhHHhcCCCCCcceEeeecCCCCCCCCCCccEEEEccc
Q 026036 77 ERRRCIELGSGTGALAIFLRKAMNLDITTSDYNDQEIEDNIAYNSTTNGITPALPHIKHSWGDAFPIPNPDWDLILASDI 156 (244)
Q Consensus 77 ~~~~VLdlG~G~G~~~~~~a~~~~~~v~~~D~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fD~I~~~~~ 156 (244)
++.+|||||||+|.++..++..+..+|+++|+++.++ +.++++...++. .++..+..+.. .++...++||+|++..+
T Consensus 79 ~~~~vLDiGcG~G~~~~~l~~~~~~~v~~vD~s~~~~-~~a~~~~~~~~~-~~~~~~~~d~~-~~~~~~~~fD~v~~~~~ 155 (241)
T 2ex4_A 79 GTSCALDCGAGIGRITKRLLLPLFREVDMVDITEDFL-VQAKTYLGEEGK-RVRNYFCCGLQ-DFTPEPDSYDVIWIQWV 155 (241)
T ss_dssp CCSEEEEETCTTTHHHHHTTTTTCSEEEEEESCHHHH-HHHHHHTGGGGG-GEEEEEECCGG-GCCCCSSCEEEEEEESC
T ss_pred CCCEEEEECCCCCHHHHHHHHhcCCEEEEEeCCHHHH-HHHHHHhhhcCC-ceEEEEEcChh-hcCCCCCCEEEEEEcch
Confidence 5789999999999999998877677999999999987 777776654421 12233333332 23444568999999999
Q ss_pred ccCCcChHHHHHHHHHHHHhcCCCCceEeecccccCCCCCCCCCCCeEEEeeeeccCccchhhHHHHHhhcCCeEEEec
Q 026036 157 LLYVKQYSNLIKSLSVLLKSYKPKDSQVGHLTKNEQGEGTEGLPWPAFLMSWRRRIGKEDETIFFTSCENAGLEVKHLG 235 (244)
Q Consensus 157 l~~~~~~~~l~~~l~~~~~~lk~gG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gf~v~~~~ 235 (244)
+ ++...+.+.+.++++.++|||||++++....... ... +....... ..+..++.++++++||+++.+.
T Consensus 156 l-~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~~~~~--~~~-------~~~~~~~~-~~~~~~~~~~l~~aGf~~~~~~ 223 (241)
T 2ex4_A 156 I-GHLTDQHLAEFLRRCKGSLRPNGIIVIKDNMAQE--GVI-------LDDVDSSV-CRDLDVVRRIICSAGLSLLAEE 223 (241)
T ss_dssp G-GGSCHHHHHHHHHHHHHHEEEEEEEEEEEEEBSS--SEE-------EETTTTEE-EEBHHHHHHHHHHTTCCEEEEE
T ss_pred h-hhCCHHHHHHHHHHHHHhcCCCeEEEEEEccCCC--cce-------ecccCCcc-cCCHHHHHHHHHHcCCeEEEee
Confidence 8 4444455678999999999999999987544332 000 00000000 0135789999999999998875
|
| >3e23_A Uncharacterized protein RPA2492; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; HET: SAM; 1.60A {Rhodopseudomonas palustris} | Back alignment and structure |
|---|
Probab=99.73 E-value=3.7e-17 Score=128.66 Aligned_cols=139 Identities=17% Similarity=0.183 Sum_probs=99.5
Q ss_pred ccCCeEEEeCCCCcHHHHHHHHhCCCeEEEEeCChHHHHHHHHHhHHhcCCCCCcceEeeecCCCCCCCCCCccEEEEcc
Q 026036 76 IERRRCIELGSGTGALAIFLRKAMNLDITTSDYNDQEIEDNIAYNSTTNGITPALPHIKHSWGDAFPIPNPDWDLILASD 155 (244)
Q Consensus 76 ~~~~~VLdlG~G~G~~~~~~a~~~~~~v~~~D~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fD~I~~~~ 155 (244)
.++.+|||+|||+|.++..+++. +.+|+++|+++.++ +.++++. ++ ..+..+..+ ++ .+++||+|++++
T Consensus 42 ~~~~~vLDiGcG~G~~~~~l~~~-~~~v~~vD~s~~~~-~~a~~~~---~~----~~~~~d~~~-~~-~~~~fD~v~~~~ 110 (211)
T 3e23_A 42 PAGAKILELGCGAGYQAEAMLAA-GFDVDATDGSPELA-AEASRRL---GR----PVRTMLFHQ-LD-AIDAYDAVWAHA 110 (211)
T ss_dssp CTTCEEEESSCTTSHHHHHHHHT-TCEEEEEESCHHHH-HHHHHHH---TS----CCEECCGGG-CC-CCSCEEEEEECS
T ss_pred CCCCcEEEECCCCCHHHHHHHHc-CCeEEEECCCHHHH-HHHHHhc---CC----ceEEeeecc-CC-CCCcEEEEEecC
Confidence 36789999999999999999877 77999999999987 6776665 22 223333322 23 467899999999
Q ss_pred cccCCcChHHHHHHHHHHHHhcCCCCceEeecccccCCCCCCCCCCCeEEEeeeeccCccchhhHHHHHhhcC-CeEEEe
Q 026036 156 ILLYVKQYSNLIKSLSVLLKSYKPKDSQVGHLTKNEQGEGTEGLPWPAFLMSWRRRIGKEDETIFFTSCENAG-LEVKHL 234 (244)
Q Consensus 156 ~l~~~~~~~~l~~~l~~~~~~lk~gG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~G-f~v~~~ 234 (244)
++ ++...++....++++.+.|||||++++.+........... .. +. .. .+.+.+.++++++| |+++.+
T Consensus 111 ~l-~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~---~~----~~-~~--~~~~~~~~~l~~aG~f~~~~~ 179 (211)
T 3e23_A 111 CL-LHVPRDELADVLKLIWRALKPGGLFYASYKSGEGEGRDKL---AR----YY-NY--PSEEWLRARYAEAGTWASVAV 179 (211)
T ss_dssp CG-GGSCHHHHHHHHHHHHHHEEEEEEEEEEEECCSSCEECTT---SC----EE-CC--CCHHHHHHHHHHHCCCSEEEE
T ss_pred ch-hhcCHHHHHHHHHHHHHhcCCCcEEEEEEcCCCccccccc---ch----hc-cC--CCHHHHHHHHHhCCCcEEEEE
Confidence 99 4444567789999999999999999888543322111110 00 11 11 23589999999999 998887
Q ss_pred cc
Q 026036 235 GS 236 (244)
Q Consensus 235 ~~ 236 (244)
..
T Consensus 180 ~~ 181 (211)
T 3e23_A 180 ES 181 (211)
T ss_dssp EE
T ss_pred Ee
Confidence 64
|
| >2fk8_A Methoxy mycolic acid synthase 4; S-adenosylmethionine-dependent methyltransferase fold, trans; HET: SAM; 2.00A {Mycobacterium tuberculosis} SCOP: c.66.1.18 PDB: 2fk7_A* 3ha3_A* 3ha5_A* 3ha7_A* | Back alignment and structure |
|---|
Probab=99.73 E-value=6.2e-17 Score=135.33 Aligned_cols=166 Identities=8% Similarity=0.068 Sum_probs=113.4
Q ss_pred HHHHHHHHhhccCcccCCeEEEeCCCCcHHHHHHHHhCCCeEEEEeCChHHHHHHHHHhHHhcCCCCCcceEeeecCCCC
Q 026036 62 TFSFAEWLMHHREWIERRRCIELGSGTGALAIFLRKAMNLDITTSDYNDQEIEDNIAYNSTTNGITPALPHIKHSWGDAF 141 (244)
Q Consensus 62 ~~~l~~~~~~~~~~~~~~~VLdlG~G~G~~~~~~a~~~~~~v~~~D~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 141 (244)
.....+.+.......++.+|||+|||+|.++..+++..+.+|+++|+|+.++ +.++++....++..++..+..+..+
T Consensus 75 ~~~~~~~~~~~~~~~~~~~vLDiGcG~G~~~~~la~~~~~~v~gvD~s~~~~-~~a~~~~~~~~~~~~v~~~~~d~~~-- 151 (318)
T 2fk8_A 75 QYAKVDLNLDKLDLKPGMTLLDIGCGWGTTMRRAVERFDVNVIGLTLSKNQH-ARCEQVLASIDTNRSRQVLLQGWED-- 151 (318)
T ss_dssp HHHHHHHHHTTSCCCTTCEEEEESCTTSHHHHHHHHHHCCEEEEEESCHHHH-HHHHHHHHTSCCSSCEEEEESCGGG--
T ss_pred HHHHHHHHHHhcCCCCcCEEEEEcccchHHHHHHHHHCCCEEEEEECCHHHH-HHHHHHHHhcCCCCceEEEECChHH--
Confidence 4455666666666678899999999999999999887677999999999987 7888887776664444444433322
Q ss_pred CCCCCCccEEEEcccccCCcChHHHHHHHHHHHHhcCCCCceEeecccccCCCCCCCCCCC---------eEEEe---ee
Q 026036 142 PIPNPDWDLILASDILLYVKQYSNLIKSLSVLLKSYKPKDSQVGHLTKNEQGEGTEGLPWP---------AFLMS---WR 209 (244)
Q Consensus 142 ~~~~~~fD~I~~~~~l~~~~~~~~l~~~l~~~~~~lk~gG~~~~~~~~~~~~~~~~~~~~~---------~~~~~---~~ 209 (244)
. +++||+|++..++ ++...++..+.++++.++|||||++++................+ .++.. ..
T Consensus 152 -~-~~~fD~v~~~~~l-~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 228 (318)
T 2fk8_A 152 -F-AEPVDRIVSIEAF-EHFGHENYDDFFKRCFNIMPADGRMTVQSSVSYHPYEMAARGKKLSFETARFIKFIVTEIFPG 228 (318)
T ss_dssp -C-CCCCSEEEEESCG-GGTCGGGHHHHHHHHHHHSCTTCEEEEEEEECCCHHHHHTTCHHHHHHHHHHHHHHHHHTSTT
T ss_pred -C-CCCcCEEEEeChH-HhcCHHHHHHHHHHHHHhcCCCcEEEEEEeccCCchhhhhccccccccccchhhHHHHhcCCC
Confidence 2 2689999999998 44433567799999999999999999885443221100000000 00000 00
Q ss_pred eccCccchhhHHHHHhhcCCeEEEec
Q 026036 210 RRIGKEDETIFFTSCENAGLEVKHLG 235 (244)
Q Consensus 210 ~~~~~~~~~~~~~~l~~~Gf~v~~~~ 235 (244)
... .+.+++.++++++||+++++.
T Consensus 229 ~~~--~s~~~~~~~l~~aGf~~~~~~ 252 (318)
T 2fk8_A 229 GRL--PSTEMMVEHGEKAGFTVPEPL 252 (318)
T ss_dssp CCC--CCHHHHHHHHHHTTCBCCCCE
T ss_pred CcC--CCHHHHHHHHHhCCCEEEEEE
Confidence 111 235889999999999987654
|
| >3evz_A Methyltransferase; NYSGXRC, NEW YORK SGX research CE structural genomics, protein structure initiative, pyrococc furiosus, PSI-2; 2.20A {Pyrococcus furiosus} | Back alignment and structure |
|---|
Probab=99.73 E-value=5.1e-17 Score=129.52 Aligned_cols=135 Identities=16% Similarity=0.177 Sum_probs=99.7
Q ss_pred cccCCeEEEeCCC-CcHHHHHHHHhCCCeEEEEeCChHHHHHHHHHhHHhcCCCCCcceEeeecCCCCCCCCCCccEEEE
Q 026036 75 WIERRRCIELGSG-TGALAIFLRKAMNLDITTSDYNDQEIEDNIAYNSTTNGITPALPHIKHSWGDAFPIPNPDWDLILA 153 (244)
Q Consensus 75 ~~~~~~VLdlG~G-~G~~~~~~a~~~~~~v~~~D~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fD~I~~ 153 (244)
..++.+|||+||| +|.+++.+++..+.+|+++|+++.++ +.+++|+..++. ++..+..++....+..+++||+|++
T Consensus 53 ~~~~~~vLDlG~G~~G~~~~~la~~~~~~v~~vD~s~~~~-~~a~~~~~~~~~--~v~~~~~d~~~~~~~~~~~fD~I~~ 129 (230)
T 3evz_A 53 LRGGEVALEIGTGHTAMMALMAEKFFNCKVTATEVDEEFF-EYARRNIERNNS--NVRLVKSNGGIIKGVVEGTFDVIFS 129 (230)
T ss_dssp CCSSCEEEEECCTTTCHHHHHHHHHHCCEEEEEECCHHHH-HHHHHHHHHTTC--CCEEEECSSCSSTTTCCSCEEEEEE
T ss_pred cCCCCEEEEcCCCHHHHHHHHHHHhcCCEEEEEECCHHHH-HHHHHHHHHhCC--CcEEEeCCchhhhhcccCceeEEEE
Confidence 3478899999999 99999999887678999999999987 889999888776 4455555543333444578999999
Q ss_pred cccccCCc----------------ChHHHHHHHHHHHHhcCCCCceEeecccccCCCCCCCCCCCeEEEeeeeccCccch
Q 026036 154 SDILLYVK----------------QYSNLIKSLSVLLKSYKPKDSQVGHLTKNEQGEGTEGLPWPAFLMSWRRRIGKEDE 217 (244)
Q Consensus 154 ~~~l~~~~----------------~~~~l~~~l~~~~~~lk~gG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 217 (244)
+.+++... ......+.++++.+.|||||++++.++. .. ...
T Consensus 130 npp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~-------------------~~----~~~ 186 (230)
T 3evz_A 130 APPYYDKPLGRVLTEREAIGGGKYGEEFSVKLLEEAFDHLNPGGKVALYLPD-------------------KE----KLL 186 (230)
T ss_dssp CCCCC---------------CCSSSCHHHHHHHHHHGGGEEEEEEEEEEEES-------------------CH----HHH
T ss_pred CCCCcCCccccccChhhhhccCccchHHHHHHHHHHHHHhCCCeEEEEEecc-------------------cH----hHH
Confidence 87763221 1122368899999999999988875211 10 124
Q ss_pred hhHHHHHhhcCCeEEEec
Q 026036 218 TIFFTSCENAGLEVKHLG 235 (244)
Q Consensus 218 ~~~~~~l~~~Gf~v~~~~ 235 (244)
..+.+.+++.||+++.+.
T Consensus 187 ~~~~~~l~~~g~~~~~~~ 204 (230)
T 3evz_A 187 NVIKERGIKLGYSVKDIK 204 (230)
T ss_dssp HHHHHHHHHTTCEEEEEE
T ss_pred HHHHHHHHHcCCceEEEE
Confidence 678899999999988763
|
| >3lcc_A Putative methyl chloride transferase; halide methyltransferase; HET: SAH; 1.80A {Arabidopsis thaliana} | Back alignment and structure |
|---|
Probab=99.73 E-value=4.8e-17 Score=130.17 Aligned_cols=153 Identities=11% Similarity=0.064 Sum_probs=104.3
Q ss_pred HHHHHHHhhccCcccCCeEEEeCCCCcHHHHHHHHhCCCeEEEEeCChHHHHHHHHHhHHhcCCCCCcceEeeecCCCCC
Q 026036 63 FSFAEWLMHHREWIERRRCIELGSGTGALAIFLRKAMNLDITTSDYNDQEIEDNIAYNSTTNGITPALPHIKHSWGDAFP 142 (244)
Q Consensus 63 ~~l~~~~~~~~~~~~~~~VLdlG~G~G~~~~~~a~~~~~~v~~~D~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 142 (244)
..+.+++.... .++.+|||+|||+|..+..++.. +.+|+++|+++.++ +.++++....+...++..+..+..+. +
T Consensus 54 ~~l~~~~~~~~--~~~~~vLDiGcG~G~~~~~l~~~-~~~v~gvD~s~~~~-~~a~~~~~~~~~~~~v~~~~~d~~~~-~ 128 (235)
T 3lcc_A 54 PLIVHLVDTSS--LPLGRALVPGCGGGHDVVAMASP-ERFVVGLDISESAL-AKANETYGSSPKAEYFSFVKEDVFTW-R 128 (235)
T ss_dssp HHHHHHHHTTC--SCCEEEEEETCTTCHHHHHHCBT-TEEEEEECSCHHHH-HHHHHHHTTSGGGGGEEEECCCTTTC-C
T ss_pred HHHHHHHHhcC--CCCCCEEEeCCCCCHHHHHHHhC-CCeEEEEECCHHHH-HHHHHHhhccCCCcceEEEECchhcC-C
Confidence 34455554322 23459999999999999988764 77899999999987 77777765433222333333333322 1
Q ss_pred CCCCCccEEEEcccccCCcChHHHHHHHHHHHHhcCCCCceEeecccccCCCCCCCCCCCeEEEeeeeccCccchhhHHH
Q 026036 143 IPNPDWDLILASDILLYVKQYSNLIKSLSVLLKSYKPKDSQVGHLTKNEQGEGTEGLPWPAFLMSWRRRIGKEDETIFFT 222 (244)
Q Consensus 143 ~~~~~fD~I~~~~~l~~~~~~~~l~~~l~~~~~~lk~gG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 222 (244)
..++||+|+++.++ ++...++..+.++++.+.|||||++++........... .+ .. .+.+++.+
T Consensus 129 -~~~~fD~v~~~~~l-~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~----~~--------~~--~~~~~~~~ 192 (235)
T 3lcc_A 129 -PTELFDLIFDYVFF-CAIEPEMRPAWAKSMYELLKPDGELITLMYPITDHVGG----PP--------YK--VDVSTFEE 192 (235)
T ss_dssp -CSSCEEEEEEESST-TTSCGGGHHHHHHHHHHHEEEEEEEEEEECCCSCCCSC----SS--------CC--CCHHHHHH
T ss_pred -CCCCeeEEEEChhh-hcCCHHHHHHHHHHHHHHCCCCcEEEEEEecccccCCC----CC--------cc--CCHHHHHH
Confidence 34589999999998 44444567799999999999999998875443321111 00 11 13578999
Q ss_pred HHhhcCCeEEEecc
Q 026036 223 SCENAGLEVKHLGS 236 (244)
Q Consensus 223 ~l~~~Gf~v~~~~~ 236 (244)
+++++||+++.+..
T Consensus 193 ~l~~~Gf~~~~~~~ 206 (235)
T 3lcc_A 193 VLVPIGFKAVSVEE 206 (235)
T ss_dssp HHGGGTEEEEEEEE
T ss_pred HHHHcCCeEEEEEe
Confidence 99999999988753
|
| >3dli_A Methyltransferase; PSI-II, NYSGXRC, structural genomics, protein structure initiative; 2.46A {Archaeoglobus fulgidus} | Back alignment and structure |
|---|
Probab=99.73 E-value=2.8e-17 Score=131.95 Aligned_cols=155 Identities=14% Similarity=0.071 Sum_probs=104.3
Q ss_pred hHHHHHHHHhhcc-CcccCCeEEEeCCCCcHHHHHHHHhCCCeEEEEeCChHHHHHHHHHhHHhcCCCCCcceEeeecCC
Q 026036 61 GTFSFAEWLMHHR-EWIERRRCIELGSGTGALAIFLRKAMNLDITTSDYNDQEIEDNIAYNSTTNGITPALPHIKHSWGD 139 (244)
Q Consensus 61 ~~~~l~~~~~~~~-~~~~~~~VLdlG~G~G~~~~~~a~~~~~~v~~~D~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 139 (244)
....+.+.+.... ...++.+|||||||+|.++..+++. +.+|+++|+|+.++ +.++++ + ..+..+..+
T Consensus 24 ~~~~~~~~~~~~l~~~~~~~~vLDiGcG~G~~~~~l~~~-~~~v~gvD~s~~~~-~~a~~~-----~----~~~~~d~~~ 92 (240)
T 3dli_A 24 SRELVKARLRRYIPYFKGCRRVLDIGCGRGEFLELCKEE-GIESIGVDINEDMI-KFCEGK-----F----NVVKSDAIE 92 (240)
T ss_dssp CHHHHHHHHGGGGGGTTTCSCEEEETCTTTHHHHHHHHH-TCCEEEECSCHHHH-HHHHTT-----S----EEECSCHHH
T ss_pred CHHHHHHHHHHHHhhhcCCCeEEEEeCCCCHHHHHHHhC-CCcEEEEECCHHHH-HHHHhh-----c----ceeeccHHH
Confidence 3444444444433 3446789999999999999999887 77899999999987 666554 1 222222222
Q ss_pred CC-CCCCCCccEEEEcccccCCcChHHHHHHHHHHHHhcCCCCceEeecccccCCCC--CCCCCCCeEEEeeeeccCccc
Q 026036 140 AF-PIPNPDWDLILASDILLYVKQYSNLIKSLSVLLKSYKPKDSQVGHLTKNEQGEG--TEGLPWPAFLMSWRRRIGKED 216 (244)
Q Consensus 140 ~~-~~~~~~fD~I~~~~~l~~~~~~~~l~~~l~~~~~~lk~gG~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~ 216 (244)
.. ++.+++||+|+++.++ ++...+++...++++.++|||||++++.++....... ... ..+ ...+.. +
T Consensus 93 ~~~~~~~~~fD~i~~~~~l-~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~-~~~-----~~~~~~--~ 163 (240)
T 3dli_A 93 YLKSLPDKYLDGVMISHFV-EHLDPERLFELLSLCYSKMKYSSYIVIESPNPTSLYSLINFY-IDP-----THKKPV--H 163 (240)
T ss_dssp HHHTSCTTCBSEEEEESCG-GGSCGGGHHHHHHHHHHHBCTTCCEEEEEECTTSHHHHHHHT-TST-----TCCSCC--C
T ss_pred HhhhcCCCCeeEEEECCch-hhCCcHHHHHHHHHHHHHcCCCcEEEEEeCCcchhHHHHHHh-cCc-----cccccC--C
Confidence 11 4556789999999999 5555566779999999999999999988655332110 000 000 111111 2
Q ss_pred hhhHHHHHhhcCCeEEEec
Q 026036 217 ETIFFTSCENAGLEVKHLG 235 (244)
Q Consensus 217 ~~~~~~~l~~~Gf~v~~~~ 235 (244)
...+.++++++||+++.+.
T Consensus 164 ~~~l~~~l~~aGf~~~~~~ 182 (240)
T 3dli_A 164 PETLKFILEYLGFRDVKIE 182 (240)
T ss_dssp HHHHHHHHHHHTCEEEEEE
T ss_pred HHHHHHHHHHCCCeEEEEE
Confidence 4788999999999987764
|
| >3e8s_A Putative SAM dependent methyltransferase; NP_744700.1, structural genomics, joint center for structural genom JCSG; HET: SAH; 2.10A {Pseudomonas putida KT2440} | Back alignment and structure |
|---|
Probab=99.73 E-value=8.5e-17 Score=127.47 Aligned_cols=145 Identities=19% Similarity=0.180 Sum_probs=97.9
Q ss_pred cccCCeEEEeCCCCcHHHHHHHHhCCCeEEEEeCChHHHHHHHHHhHHhcCCCCCcceEeeecCCC--CCCC-CCCccEE
Q 026036 75 WIERRRCIELGSGTGALAIFLRKAMNLDITTSDYNDQEIEDNIAYNSTTNGITPALPHIKHSWGDA--FPIP-NPDWDLI 151 (244)
Q Consensus 75 ~~~~~~VLdlG~G~G~~~~~~a~~~~~~v~~~D~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~-~~~fD~I 151 (244)
..++.+|||+|||+|.++..++.. +.+|+++|+++.++ +.++++ .. +..+..+..+. .+.. ..+||+|
T Consensus 50 ~~~~~~vLdiG~G~G~~~~~l~~~-~~~v~~vD~s~~~~-~~a~~~---~~----~~~~~~~~~~~~~~~~~~~~~fD~v 120 (227)
T 3e8s_A 50 GRQPERVLDLGCGEGWLLRALADR-GIEAVGVDGDRTLV-DAARAA---GA----GEVHLASYAQLAEAKVPVGKDYDLI 120 (227)
T ss_dssp HTCCSEEEEETCTTCHHHHHHHTT-TCEEEEEESCHHHH-HHHHHT---CS----SCEEECCHHHHHTTCSCCCCCEEEE
T ss_pred cCCCCEEEEeCCCCCHHHHHHHHC-CCEEEEEcCCHHHH-HHHHHh---cc----cccchhhHHhhcccccccCCCccEE
Confidence 345689999999999999999877 77999999999987 666655 11 12333322211 1222 3469999
Q ss_pred EEcccccCCcChHHHHHHHHHHHHhcCCCCceEeecccccCCCCCCCCCCCeEEE-----------eeeeccCccchhhH
Q 026036 152 LASDILLYVKQYSNLIKSLSVLLKSYKPKDSQVGHLTKNEQGEGTEGLPWPAFLM-----------SWRRRIGKEDETIF 220 (244)
Q Consensus 152 ~~~~~l~~~~~~~~l~~~l~~~~~~lk~gG~~~~~~~~~~~~~~~~~~~~~~~~~-----------~~~~~~~~~~~~~~ 220 (244)
+++.+++ +. +....++++.++|||||++++.++......... ....|.. .+..++. +.+++
T Consensus 121 ~~~~~l~-~~---~~~~~l~~~~~~L~pgG~l~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~ 192 (227)
T 3e8s_A 121 CANFALL-HQ---DIIELLSAMRTLLVPGGALVIQTLHPWSVADGD--YQDGWREESFAGFAGDWQPMPWYFR--TLASW 192 (227)
T ss_dssp EEESCCC-SS---CCHHHHHHHHHTEEEEEEEEEEECCTTTTCTTC--CSCEEEEECCTTSSSCCCCEEEEEC--CHHHH
T ss_pred EECchhh-hh---hHHHHHHHHHHHhCCCeEEEEEecCccccCccc--cccccchhhhhccccCcccceEEEe--cHHHH
Confidence 9999994 43 344899999999999999999865543322110 0111111 1111221 35899
Q ss_pred HHHHhhcCCeEEEecc
Q 026036 221 FTSCENAGLEVKHLGS 236 (244)
Q Consensus 221 ~~~l~~~Gf~v~~~~~ 236 (244)
.++++++||+++++.+
T Consensus 193 ~~~l~~aGf~~~~~~~ 208 (227)
T 3e8s_A 193 LNALDMAGLRLVSLQE 208 (227)
T ss_dssp HHHHHHTTEEEEEEEC
T ss_pred HHHHHHcCCeEEEEec
Confidence 9999999999998765
|
| >2a14_A Indolethylamine N-methyltransferase; SGC,INMT, structural genomics, structural genomics consortium; HET: SAH; 1.70A {Homo sapiens} SCOP: c.66.1.15 | Back alignment and structure |
|---|
Probab=99.72 E-value=1.5e-17 Score=135.60 Aligned_cols=152 Identities=16% Similarity=0.133 Sum_probs=99.1
Q ss_pred CcccCCeEEEeCCCCcHHHHHHHHhCCCeEEEEeCChHHHHHHHHHhHHhcCCCC-------------------------
Q 026036 74 EWIERRRCIELGSGTGALAIFLRKAMNLDITTSDYNDQEIEDNIAYNSTTNGITP------------------------- 128 (244)
Q Consensus 74 ~~~~~~~VLdlG~G~G~~~~~~a~~~~~~v~~~D~~~~~l~~~~~~~~~~~~~~~------------------------- 128 (244)
...++.+|||||||+|.++..++..+..+|+|+|+|+.|+ +.+++++..+....
T Consensus 52 ~~~~g~~vLDiGCG~G~~~~~~~~~~~~~v~g~D~s~~~l-~~a~~~~~~~~~~~d~s~~~~~~~~~~~~~~~~~~~~~~ 130 (263)
T 2a14_A 52 GGLQGDTLIDIGSGPTIYQVLAACDSFQDITLSDFTDRNR-EELEKWLKKEPGAYDWTPAVKFACELEGNSGRWEEKEEK 130 (263)
T ss_dssp TSCCEEEEEESSCTTCCGGGTTGGGTEEEEEEEESCHHHH-HHHHHHHHTCTTCCCCHHHHHHHHHHTTCGGGHHHHHHH
T ss_pred CCCCCceEEEeCCCccHHHHHHHHhhhcceeeccccHHHH-HHHHHHHhcCCCcccchHHHHHHHhcCCCCcchhhHHHH
Confidence 3457889999999999888777666555799999999998 77776654332100
Q ss_pred ---Ccc-eEeeecCCCCCC---CCCCccEEEEcccccCC-cChHHHHHHHHHHHHhcCCCCceEeecccccCCCCCCCCC
Q 026036 129 ---ALP-HIKHSWGDAFPI---PNPDWDLILASDILLYV-KQYSNLIKSLSVLLKSYKPKDSQVGHLTKNEQGEGTEGLP 200 (244)
Q Consensus 129 ---~~~-~~~~~~~~~~~~---~~~~fD~I~~~~~l~~~-~~~~~l~~~l~~~~~~lk~gG~~~~~~~~~~~~~~~~~~~ 200 (244)
.+. .+..+..+..++ ..++||+|+++.++++. ...+++.+++++++++|||||+|++.......
T Consensus 131 ~~~~i~~~~~~D~~~~~~~~~~~~~~fD~V~~~~~l~~i~~~~~~~~~~l~~i~r~LKPGG~li~~~~~~~~-------- 202 (263)
T 2a14_A 131 LRAAVKRVLKCDVHLGNPLAPAVLPLADCVLTLLAMECACCSLDAYRAALCNLASLLKPGGHLVTTVTLRLP-------- 202 (263)
T ss_dssp HHHHEEEEEECCTTSSSTTTTCCCCCEEEEEEESCHHHHCSSHHHHHHHHHHHHTTEEEEEEEEEEEESSCC--------
T ss_pred HHhhhheEEeccccCCCCCCccccCCCCEeeehHHHHHhcCCHHHHHHHHHHHHHHcCCCcEEEEEEeecCc--------
Confidence 011 223333332222 24689999999998431 34567789999999999999999988422111
Q ss_pred CCeEEEe-eeeccCccchhhHHHHHhhcCCeEEEecc
Q 026036 201 WPAFLMS-WRRRIGKEDETIFFTSCENAGLEVKHLGS 236 (244)
Q Consensus 201 ~~~~~~~-~~~~~~~~~~~~~~~~l~~~Gf~v~~~~~ 236 (244)
.+... +......-+.+++.+.++++||+++++..
T Consensus 203 --~~~~g~~~~~~~~~~~~~l~~~l~~aGF~i~~~~~ 237 (263)
T 2a14_A 203 --SYMVGKREFSCVALEKGEVEQAVLDAGFDIEQLLH 237 (263)
T ss_dssp --EEEETTEEEECCCCCHHHHHHHHHHTTEEEEEEEE
T ss_pred --cceeCCeEeeccccCHHHHHHHHHHCCCEEEEEee
Confidence 01100 00000011357899999999999887753
|
| >3ou2_A SAM-dependent methyltransferase; O-methyltransferase, SAH; HET: SAH; 1.50A {Streptomyces luridus} PDB: 3ou6_A* 3ou7_A* | Back alignment and structure |
|---|
Probab=99.72 E-value=1.6e-16 Score=125.27 Aligned_cols=149 Identities=13% Similarity=0.054 Sum_probs=99.2
Q ss_pred cccCCeEEEeCCCCcHHHHHHHHhCCCeEEEEeCChHHHHHHHHHhHHhcCCCCCcceEeeecCCCCCCCCCCccEEEEc
Q 026036 75 WIERRRCIELGSGTGALAIFLRKAMNLDITTSDYNDQEIEDNIAYNSTTNGITPALPHIKHSWGDAFPIPNPDWDLILAS 154 (244)
Q Consensus 75 ~~~~~~VLdlG~G~G~~~~~~a~~~~~~v~~~D~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fD~I~~~ 154 (244)
..++.+|||+|||+|.++..++.. +.+|+++|+++.++ +.+++ .+. .++..+..+..+. ..+++||+|+++
T Consensus 44 ~~~~~~vLdiG~G~G~~~~~l~~~-~~~v~~~D~s~~~~-~~a~~----~~~-~~~~~~~~d~~~~--~~~~~~D~v~~~ 114 (218)
T 3ou2_A 44 GNIRGDVLELASGTGYWTRHLSGL-ADRVTALDGSAEMI-AEAGR----HGL-DNVEFRQQDLFDW--TPDRQWDAVFFA 114 (218)
T ss_dssp TTSCSEEEEESCTTSHHHHHHHHH-SSEEEEEESCHHHH-HHHGG----GCC-TTEEEEECCTTSC--CCSSCEEEEEEE
T ss_pred CCCCCeEEEECCCCCHHHHHHHhc-CCeEEEEeCCHHHH-HHHHh----cCC-CCeEEEecccccC--CCCCceeEEEEe
Confidence 456779999999999999999887 77999999999987 55554 222 2234444444332 456789999999
Q ss_pred ccccCCcChHHHHHHHHHHHHhcCCCCceEeecccccCCC-CCCCCC-CCeEEEee---------eeccCccchhhHHHH
Q 026036 155 DILLYVKQYSNLIKSLSVLLKSYKPKDSQVGHLTKNEQGE-GTEGLP-WPAFLMSW---------RRRIGKEDETIFFTS 223 (244)
Q Consensus 155 ~~l~~~~~~~~l~~~l~~~~~~lk~gG~~~~~~~~~~~~~-~~~~~~-~~~~~~~~---------~~~~~~~~~~~~~~~ 223 (244)
.++ ++...+.+...++++.+.|||||++++......... ...... ...+.... ..++ .+.+++.++
T Consensus 115 ~~l-~~~~~~~~~~~l~~~~~~L~pgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~ 191 (218)
T 3ou2_A 115 HWL-AHVPDDRFEAFWESVRSAVAPGGVVEFVDVTDHERRLEQQDDSEPEVAVRRTLQDGRSFRIVKVF--RSPAELTER 191 (218)
T ss_dssp SCG-GGSCHHHHHHHHHHHHHHEEEEEEEEEEEECCCC------------CEEEEECTTSCEEEEECCC--CCHHHHHHH
T ss_pred chh-hcCCHHHHHHHHHHHHHHcCCCeEEEEEeCCCCccccchhhhcccccceeeecCCcchhhHhhcC--CCHHHHHHH
Confidence 998 555555567999999999999999998855442211 111000 00011100 0112 235789999
Q ss_pred HhhcCCeEEEec
Q 026036 224 CENAGLEVKHLG 235 (244)
Q Consensus 224 l~~~Gf~v~~~~ 235 (244)
++++||+++...
T Consensus 192 l~~aGf~v~~~~ 203 (218)
T 3ou2_A 192 LTALGWSCSVDE 203 (218)
T ss_dssp HHHTTEEEEEEE
T ss_pred HHHCCCEEEeee
Confidence 999999977554
|
| >3l8d_A Methyltransferase; structural genomics, PSI, nysgrc, protein structure initiative, NEW YORK SGX research center for STRU genomics; 1.70A {Bacillus thuringiensis} | Back alignment and structure |
|---|
Probab=99.72 E-value=3e-17 Score=131.68 Aligned_cols=158 Identities=13% Similarity=0.181 Sum_probs=104.3
Q ss_pred HHHHHHhhccCcccCCeEEEeCCCCcHHHHHHHHhCCCeEEEEeCChHHHHHHHHHhHHhcCCCCCcceEeeecCCCCCC
Q 026036 64 SFAEWLMHHREWIERRRCIELGSGTGALAIFLRKAMNLDITTSDYNDQEIEDNIAYNSTTNGITPALPHIKHSWGDAFPI 143 (244)
Q Consensus 64 ~l~~~~~~~~~~~~~~~VLdlG~G~G~~~~~~a~~~~~~v~~~D~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 143 (244)
.+.+++..... ++.+|||||||+|.++..++.. +.+|+++|+++.++ +.++++... .++..+..+.. .++.
T Consensus 42 ~~~~~l~~~~~--~~~~vLDiG~G~G~~~~~l~~~-~~~v~~vD~s~~~~-~~a~~~~~~----~~~~~~~~d~~-~~~~ 112 (242)
T 3l8d_A 42 TIIPFFEQYVK--KEAEVLDVGCGDGYGTYKLSRT-GYKAVGVDISEVMI-QKGKERGEG----PDLSFIKGDLS-SLPF 112 (242)
T ss_dssp THHHHHHHHSC--TTCEEEEETCTTSHHHHHHHHT-TCEEEEEESCHHHH-HHHHTTTCB----TTEEEEECBTT-BCSS
T ss_pred HHHHHHHHHcC--CCCeEEEEcCCCCHHHHHHHHc-CCeEEEEECCHHHH-HHHHhhccc----CCceEEEcchh-cCCC
Confidence 44555544433 6789999999999999999887 77999999999987 666655321 22344444443 2455
Q ss_pred CCCCccEEEEcccccCCcChHHHHHHHHHHHHhcCCCCceEeecccccCCCCCCCCCCCeEEEeeeeccCccchhhHHHH
Q 026036 144 PNPDWDLILASDILLYVKQYSNLIKSLSVLLKSYKPKDSQVGHLTKNEQGEGTEGLPWPAFLMSWRRRIGKEDETIFFTS 223 (244)
Q Consensus 144 ~~~~fD~I~~~~~l~~~~~~~~l~~~l~~~~~~lk~gG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 223 (244)
.+++||+|++.+++++. ++....++++.++|+|||++++.+........... ..... .........+..++.++
T Consensus 113 ~~~~fD~v~~~~~l~~~---~~~~~~l~~~~~~L~pgG~l~i~~~~~~~~~~~~~--~~~~~-~~~~~~~~~~~~~~~~~ 186 (242)
T 3l8d_A 113 ENEQFEAIMAINSLEWT---EEPLRALNEIKRVLKSDGYACIAILGPTAKPRENS--YPRLY-GKDVVCNTMMPWEFEQL 186 (242)
T ss_dssp CTTCEEEEEEESCTTSS---SCHHHHHHHHHHHEEEEEEEEEEEECTTCGGGGGG--GGGGG-TCCCSSCCCCHHHHHHH
T ss_pred CCCCccEEEEcChHhhc---cCHHHHHHHHHHHhCCCeEEEEEEcCCcchhhhhh--hhhhc-cccccccCCCHHHHHHH
Confidence 57799999999999443 34458999999999999999988544322111000 00000 00001111234788999
Q ss_pred HhhcCCeEEEecc
Q 026036 224 CENAGLEVKHLGS 236 (244)
Q Consensus 224 l~~~Gf~v~~~~~ 236 (244)
++++||+++++..
T Consensus 187 l~~~Gf~~~~~~~ 199 (242)
T 3l8d_A 187 VKEQGFKVVDGIG 199 (242)
T ss_dssp HHHTTEEEEEEEE
T ss_pred HHHcCCEEEEeec
Confidence 9999999987653
|
| >3h2b_A SAM-dependent methyltransferase; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; HET: SAH; 2.00A {Corynebacterium glutamicum atcc 13032} | Back alignment and structure |
|---|
Probab=99.72 E-value=6.5e-17 Score=126.41 Aligned_cols=139 Identities=14% Similarity=0.043 Sum_probs=98.1
Q ss_pred CCeEEEeCCCCcHHHHHHHHhCCCeEEEEeCChHHHHHHHHHhHHhcCCCCCcceEeeecCCCCCCCCCCccEEEEcccc
Q 026036 78 RRRCIELGSGTGALAIFLRKAMNLDITTSDYNDQEIEDNIAYNSTTNGITPALPHIKHSWGDAFPIPNPDWDLILASDIL 157 (244)
Q Consensus 78 ~~~VLdlG~G~G~~~~~~a~~~~~~v~~~D~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fD~I~~~~~l 157 (244)
+.+|||+|||+|.++..++.. +.+|+++|+++.++ +.++++.. ++..+..+..+ ++..+++||+|+++.++
T Consensus 42 ~~~vLDiGcG~G~~~~~l~~~-~~~v~gvD~s~~~~-~~a~~~~~------~~~~~~~d~~~-~~~~~~~fD~v~~~~~l 112 (203)
T 3h2b_A 42 DGVILDVGSGTGRWTGHLASL-GHQIEGLEPATRLV-ELARQTHP------SVTFHHGTITD-LSDSPKRWAGLLAWYSL 112 (203)
T ss_dssp CSCEEEETCTTCHHHHHHHHT-TCCEEEECCCHHHH-HHHHHHCT------TSEEECCCGGG-GGGSCCCEEEEEEESSS
T ss_pred CCeEEEecCCCCHHHHHHHhc-CCeEEEEeCCHHHH-HHHHHhCC------CCeEEeCcccc-cccCCCCeEEEEehhhH
Confidence 689999999999999999887 67999999999987 66665521 22333333322 34456789999999998
Q ss_pred cCCcChHHHHHHHHHHHHhcCCCCceEeecccccCCCCCCCCCCCeEEEeeeeccCccchhhHHHHHhhcCCeEEEec
Q 026036 158 LYVKQYSNLIKSLSVLLKSYKPKDSQVGHLTKNEQGEGTEGLPWPAFLMSWRRRIGKEDETIFFTSCENAGLEVKHLG 235 (244)
Q Consensus 158 ~~~~~~~~l~~~l~~~~~~lk~gG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gf~v~~~~ 235 (244)
++....+....++++.+.|||||++++.+.......... ... ...+. .+.+++.++++++||+++.+.
T Consensus 113 -~~~~~~~~~~~l~~~~~~L~pgG~l~i~~~~~~~~~~~~--~~~-----~~~~~--~~~~~~~~~l~~~Gf~~~~~~ 180 (203)
T 3h2b_A 113 -IHMGPGELPDALVALRMAVEDGGGLLMSFFSGPSLEPMY--HPV-----ATAYR--WPLPELAQALETAGFQVTSSH 180 (203)
T ss_dssp -TTCCTTTHHHHHHHHHHTEEEEEEEEEEEECCSSCEEEC--CSS-----SCEEE--CCHHHHHHHHHHTTEEEEEEE
T ss_pred -hcCCHHHHHHHHHHHHHHcCCCcEEEEEEccCCchhhhh--chh-----hhhcc--CCHHHHHHHHHHCCCcEEEEE
Confidence 444445677999999999999999998854443211000 000 01111 125889999999999998875
|
| >3g2m_A PCZA361.24; SAM-dependent methyltransferase, glycopeptide antibiotics biosynthesis, structural genomics; 2.00A {Amycolatopsis orientalis} PDB: 3g2o_A* 3g2p_A* 3g2q_A* | Back alignment and structure |
|---|
Probab=99.72 E-value=3.6e-17 Score=135.62 Aligned_cols=111 Identities=10% Similarity=0.122 Sum_probs=83.5
Q ss_pred cCCeEEEeCCCCcHHHHHHHHhCCCeEEEEeCChHHHHHHHHHhHHhcCCC--CCcceEeeecCCCCCCCCCCccEEEEc
Q 026036 77 ERRRCIELGSGTGALAIFLRKAMNLDITTSDYNDQEIEDNIAYNSTTNGIT--PALPHIKHSWGDAFPIPNPDWDLILAS 154 (244)
Q Consensus 77 ~~~~VLdlG~G~G~~~~~~a~~~~~~v~~~D~~~~~l~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~fD~I~~~ 154 (244)
++.+|||||||+|.++..+++. +.+|+++|+++.++ +.++++....+.. .++..+..+..+ ++. +++||+|+++
T Consensus 82 ~~~~vLDlGcG~G~~~~~l~~~-~~~v~gvD~s~~~~-~~a~~~~~~~~~~~~~~v~~~~~d~~~-~~~-~~~fD~v~~~ 157 (299)
T 3g2m_A 82 VSGPVLELAAGMGRLTFPFLDL-GWEVTALELSTSVL-AAFRKRLAEAPADVRDRCTLVQGDMSA-FAL-DKRFGTVVIS 157 (299)
T ss_dssp CCSCEEEETCTTTTTHHHHHTT-TCCEEEEESCHHHH-HHHHHHHHTSCHHHHTTEEEEECBTTB-CCC-SCCEEEEEEC
T ss_pred CCCcEEEEeccCCHHHHHHHHc-CCeEEEEECCHHHH-HHHHHHHhhcccccccceEEEeCchhc-CCc-CCCcCEEEEC
Confidence 3449999999999999999887 67899999999987 7777776654321 234445444433 233 5789999976
Q ss_pred ccccCCcChHHHHHHHHHHHHhcCCCCceEeeccccc
Q 026036 155 DILLYVKQYSNLIKSLSVLLKSYKPKDSQVGHLTKNE 191 (244)
Q Consensus 155 ~~l~~~~~~~~l~~~l~~~~~~lk~gG~~~~~~~~~~ 191 (244)
..++++...+++.++++++.+.|||||++++.+....
T Consensus 158 ~~~~~~~~~~~~~~~l~~~~~~L~pgG~l~~~~~~~~ 194 (299)
T 3g2m_A 158 SGSINELDEADRRGLYASVREHLEPGGKFLLSLAMSE 194 (299)
T ss_dssp HHHHTTSCHHHHHHHHHHHHHHEEEEEEEEEEEECCH
T ss_pred CcccccCCHHHHHHHHHHHHHHcCCCcEEEEEeecCc
Confidence 5544666666778999999999999999999855443
|
| >3hm2_A Precorrin-6Y C5,15-methyltransferase; alpha-beta-sandwich, structural genomics, PSI-2, protein structure initiative; 2.21A {Corynebacterium diphtheriae} | Back alignment and structure |
|---|
Probab=99.72 E-value=1.2e-16 Score=122.03 Aligned_cols=141 Identities=13% Similarity=0.142 Sum_probs=102.9
Q ss_pred HHHHHHHHhhccCcccCCeEEEeCCCCcHHHHHHHHhC-CCeEEEEeCChHHHHHHHHHhHHhcCCCCCcceEeeecCCC
Q 026036 62 TFSFAEWLMHHREWIERRRCIELGSGTGALAIFLRKAM-NLDITTSDYNDQEIEDNIAYNSTTNGITPALPHIKHSWGDA 140 (244)
Q Consensus 62 ~~~l~~~~~~~~~~~~~~~VLdlG~G~G~~~~~~a~~~-~~~v~~~D~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 140 (244)
...+...+.......++.+|||+|||+|.++..++... +.+|+++|+++.++ +.++++...++.+.++ .+..+..+.
T Consensus 10 ~~~~~~~~~~~~~~~~~~~vldiG~G~G~~~~~l~~~~~~~~v~~vD~~~~~~-~~a~~~~~~~~~~~~~-~~~~d~~~~ 87 (178)
T 3hm2_A 10 KQHVRALAISALAPKPHETLWDIGGGSGSIAIEWLRSTPQTTAVCFEISEERR-ERILSNAINLGVSDRI-AVQQGAPRA 87 (178)
T ss_dssp HHHHHHHHHHHHCCCTTEEEEEESTTTTHHHHHHHTTSSSEEEEEECSCHHHH-HHHHHHHHTTTCTTSE-EEECCTTGG
T ss_pred HHHHHHHHHHHhcccCCCeEEEeCCCCCHHHHHHHHHCCCCeEEEEeCCHHHH-HHHHHHHHHhCCCCCE-EEecchHhh
Confidence 33444555555556678899999999999999998875 67899999999987 8888888877775455 444443333
Q ss_pred CCCCCCCccEEEEcccccCCcChHHHHHHHHHHHHhcCCCCceEeecccccCCCCCCCCCCCeEEEeeeeccCccchhhH
Q 026036 141 FPIPNPDWDLILASDILLYVKQYSNLIKSLSVLLKSYKPKDSQVGHLTKNEQGEGTEGLPWPAFLMSWRRRIGKEDETIF 220 (244)
Q Consensus 141 ~~~~~~~fD~I~~~~~l~~~~~~~~l~~~l~~~~~~lk~gG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 220 (244)
++...++||+|+++.++++ .+.++++.+.|||||++++..... .+...+
T Consensus 88 ~~~~~~~~D~i~~~~~~~~-------~~~l~~~~~~L~~gG~l~~~~~~~------------------------~~~~~~ 136 (178)
T 3hm2_A 88 FDDVPDNPDVIFIGGGLTA-------PGVFAAAWKRLPVGGRLVANAVTV------------------------ESEQML 136 (178)
T ss_dssp GGGCCSCCSEEEECC-TTC-------TTHHHHHHHTCCTTCEEEEEECSH------------------------HHHHHH
T ss_pred hhccCCCCCEEEECCcccH-------HHHHHHHHHhcCCCCEEEEEeecc------------------------ccHHHH
Confidence 3333378999999988833 378889999999999888752111 124577
Q ss_pred HHHHhhcCCeEEEec
Q 026036 221 FTSCENAGLEVKHLG 235 (244)
Q Consensus 221 ~~~l~~~Gf~v~~~~ 235 (244)
.+.+++.|+++..+.
T Consensus 137 ~~~~~~~~~~~~~~~ 151 (178)
T 3hm2_A 137 WALRKQFGGTISSFA 151 (178)
T ss_dssp HHHHHHHCCEEEEEE
T ss_pred HHHHHHcCCeeEEEE
Confidence 788888998887654
|
| >3mgg_A Methyltransferase; NYSGXRC, PSI-II, protein structure initiative, structural genomics, NEW YORK SGX research center for structural genomics; 1.86A {Methanosarcina mazei} | Back alignment and structure |
|---|
Probab=99.71 E-value=3.3e-16 Score=128.21 Aligned_cols=173 Identities=17% Similarity=0.202 Sum_probs=115.4
Q ss_pred hHHHHHHHHhhccCcccCCeEEEeCCCCcHHHHHHHHhC-CCeEEEEeCChHHHHHHHHHhHHhcCCCCCcceEeeecCC
Q 026036 61 GTFSFAEWLMHHREWIERRRCIELGSGTGALAIFLRKAM-NLDITTSDYNDQEIEDNIAYNSTTNGITPALPHIKHSWGD 139 (244)
Q Consensus 61 ~~~~l~~~~~~~~~~~~~~~VLdlG~G~G~~~~~~a~~~-~~~v~~~D~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 139 (244)
....+.+++.......++.+|||||||+|.++..+++.. +.+|+++|+++.++ +.++++...++.+ ++..+..+..
T Consensus 21 ~~~~l~~~l~~~~~~~~~~~vLDiG~G~G~~~~~l~~~~~~~~v~~vD~s~~~~-~~a~~~~~~~~~~-~~~~~~~d~~- 97 (276)
T 3mgg_A 21 QAETLEKLLHHDTVYPPGAKVLEAGCGIGAQTVILAKNNPDAEITSIDISPESL-EKARENTEKNGIK-NVKFLQANIF- 97 (276)
T ss_dssp --CHHHHHHHTTCCCCTTCEEEETTCTTSHHHHHHHHHCTTSEEEEEESCHHHH-HHHHHHHHHTTCC-SEEEEECCGG-
T ss_pred HHHHHHHHHhhcccCCCCCeEEEecCCCCHHHHHHHHhCCCCEEEEEECCHHHH-HHHHHHHHHcCCC-CcEEEEcccc-
Confidence 345666777666666788999999999999999998886 67999999999987 7888887776653 3334433332
Q ss_pred CCCCCCCCccEEEEcccccCCcChHHHHHHHHHHHHhcCCCCceEeecccccCCCCCCCCCCCe---EE---Eee--eec
Q 026036 140 AFPIPNPDWDLILASDILLYVKQYSNLIKSLSVLLKSYKPKDSQVGHLTKNEQGEGTEGLPWPA---FL---MSW--RRR 211 (244)
Q Consensus 140 ~~~~~~~~fD~I~~~~~l~~~~~~~~l~~~l~~~~~~lk~gG~~~~~~~~~~~~~~~~~~~~~~---~~---~~~--~~~ 211 (244)
.+++.+++||+|+++.++++.. +....++++.++|||||.+++........... ...+. +. ... ...
T Consensus 98 ~~~~~~~~fD~v~~~~~l~~~~---~~~~~l~~~~~~L~pgG~l~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~ 172 (276)
T 3mgg_A 98 SLPFEDSSFDHIFVCFVLEHLQ---SPEEALKSLKKVLKPGGTITVIEGDHGSCYFH--PEGKKAIEAWNCLIRVQAYMK 172 (276)
T ss_dssp GCCSCTTCEEEEEEESCGGGCS---CHHHHHHHHHHHEEEEEEEEEEEECGGGCEEE--SCCHHHHHHHHHHHHHHHHTT
T ss_pred cCCCCCCCeeEEEEechhhhcC---CHHHHHHHHHHHcCCCcEEEEEEcCCCCceEC--CCcHHHHHHHHHHHHHHHhcC
Confidence 2445567999999999994433 33489999999999999998874332111000 00000 00 000 000
Q ss_pred cCccchhhHHHHHhhcCCeEEEeccEEEEE
Q 026036 212 IGKEDETIFFTSCENAGLEVKHLGSRVYCI 241 (244)
Q Consensus 212 ~~~~~~~~~~~~l~~~Gf~v~~~~~~~~~~ 241 (244)
........+.++++++||+++++......+
T Consensus 173 ~~~~~~~~l~~~l~~aGf~~v~~~~~~~~~ 202 (276)
T 3mgg_A 173 GNSLVGRQIYPLLQESGFEKIRVEPRMVYI 202 (276)
T ss_dssp CCTTGGGGHHHHHHHTTCEEEEEEEEEEEE
T ss_pred CCcchHHHHHHHHHHCCCCeEEEeeEEEEC
Confidence 011124678899999999999887665443
|
| >3mti_A RRNA methylase; SAM-dependent, PSI, MCSG, structural genomics, midwest cente structural genomics, protein structure initiative; 1.95A {Streptococcus thermophilus} PDB: 3lby_A* | Back alignment and structure |
|---|
Probab=99.71 E-value=5.7e-17 Score=124.99 Aligned_cols=109 Identities=9% Similarity=0.044 Sum_probs=80.1
Q ss_pred cccCCeEEEeCCCCcHHHHHHHHhCCCeEEEEeCChHHHHHHHHHhHHhcCCCCCcceEeeecCCCCCCCCCCccEEEEc
Q 026036 75 WIERRRCIELGSGTGALAIFLRKAMNLDITTSDYNDQEIEDNIAYNSTTNGITPALPHIKHSWGDAFPIPNPDWDLILAS 154 (244)
Q Consensus 75 ~~~~~~VLdlG~G~G~~~~~~a~~~~~~v~~~D~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fD~I~~~ 154 (244)
..++.+|||+|||+|..+..+++. +.+|+++|+|+.++ +.++++...+++ .++..+..+..+.....+++||+|+++
T Consensus 20 ~~~~~~vLDiGcG~G~~~~~la~~-~~~v~~vD~s~~~l-~~a~~~~~~~~~-~~v~~~~~~~~~l~~~~~~~fD~v~~~ 96 (185)
T 3mti_A 20 LDDESIVVDATMGNGNDTAFLAGL-SKKVYAFDVQEQAL-GKTSQRLSDLGI-ENTELILDGHENLDHYVREPIRAAIFN 96 (185)
T ss_dssp CCTTCEEEESCCTTSHHHHHHHTT-SSEEEEEESCHHHH-HHHHHHHHHHTC-CCEEEEESCGGGGGGTCCSCEEEEEEE
T ss_pred CCCCCEEEEEcCCCCHHHHHHHHh-CCEEEEEECCHHHH-HHHHHHHHHcCC-CcEEEEeCcHHHHHhhccCCcCEEEEe
Confidence 347889999999999999999987 88999999999997 888888887776 344444322222111345689999987
Q ss_pred ccccCCc-------ChHHHHHHHHHHHHhcCCCCceEeec
Q 026036 155 DILLYVK-------QYSNLIKSLSVLLKSYKPKDSQVGHL 187 (244)
Q Consensus 155 ~~l~~~~-------~~~~l~~~l~~~~~~lk~gG~~~~~~ 187 (244)
... .+. ........++++.+.|||||++++..
T Consensus 97 ~~~-~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~i~~ 135 (185)
T 3mti_A 97 LGY-LPSADKSVITKPHTTLEAIEKILDRLEVGGRLAIMI 135 (185)
T ss_dssp EC------------CHHHHHHHHHHHHHHEEEEEEEEEEE
T ss_pred CCC-CCCcchhcccChhhHHHHHHHHHHhcCCCcEEEEEE
Confidence 432 222 33455688899999999999998873
|
| >3njr_A Precorrin-6Y methylase; methyltransferase, decarboxylase, transferase; HET: SAH PG4; 2.70A {Rhodobacter capsulatus} | Back alignment and structure |
|---|
Probab=99.71 E-value=4.3e-16 Score=122.23 Aligned_cols=134 Identities=16% Similarity=0.139 Sum_probs=99.3
Q ss_pred HHHhhccCcccCCeEEEeCCCCcHHHHHHHHhCCCeEEEEeCChHHHHHHHHHhHHhcCCCCCcceEeeecCCCCCCCCC
Q 026036 67 EWLMHHREWIERRRCIELGSGTGALAIFLRKAMNLDITTSDYNDQEIEDNIAYNSTTNGITPALPHIKHSWGDAFPIPNP 146 (244)
Q Consensus 67 ~~~~~~~~~~~~~~VLdlG~G~G~~~~~~a~~~~~~v~~~D~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 146 (244)
..+.......++.+|||+|||+|.+++.+++. +.+|+++|+++.++ +.++++...++++.++..+..+..+.++ ..+
T Consensus 45 ~~~l~~l~~~~~~~vLDlGcG~G~~~~~la~~-~~~v~~vD~s~~~~-~~a~~~~~~~g~~~~v~~~~~d~~~~~~-~~~ 121 (204)
T 3njr_A 45 ALTLAALAPRRGELLWDIGGGSGSVSVEWCLA-GGRAITIEPRADRI-ENIQKNIDTYGLSPRMRAVQGTAPAALA-DLP 121 (204)
T ss_dssp HHHHHHHCCCTTCEEEEETCTTCHHHHHHHHT-TCEEEEEESCHHHH-HHHHHHHHHTTCTTTEEEEESCTTGGGT-TSC
T ss_pred HHHHHhcCCCCCCEEEEecCCCCHHHHHHHHc-CCEEEEEeCCHHHH-HHHHHHHHHcCCCCCEEEEeCchhhhcc-cCC
Confidence 33444445567889999999999999999988 88999999999997 8888898888775445544444333222 224
Q ss_pred CccEEEEcccccCCcChHHHHHHHHHHHHhcCCCCceEeecccccCCCCCCCCCCCeEEEeeeeccCccchhhHHHHHhh
Q 026036 147 DWDLILASDILLYVKQYSNLIKSLSVLLKSYKPKDSQVGHLTKNEQGEGTEGLPWPAFLMSWRRRIGKEDETIFFTSCEN 226 (244)
Q Consensus 147 ~fD~I~~~~~l~~~~~~~~l~~~l~~~~~~lk~gG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 226 (244)
+||+|++...+ ... .++++.+.|||||++++..... ++...+.+.+++
T Consensus 122 ~~D~v~~~~~~-------~~~-~l~~~~~~LkpgG~lv~~~~~~------------------------~~~~~~~~~l~~ 169 (204)
T 3njr_A 122 LPEAVFIGGGG-------SQA-LYDRLWEWLAPGTRIVANAVTL------------------------ESETLLTQLHAR 169 (204)
T ss_dssp CCSEEEECSCC-------CHH-HHHHHHHHSCTTCEEEEEECSH------------------------HHHHHHHHHHHH
T ss_pred CCCEEEECCcc-------cHH-HHHHHHHhcCCCcEEEEEecCc------------------------ccHHHHHHHHHh
Confidence 79999987644 233 8899999999999988762111 234677888999
Q ss_pred cCCeEEEec
Q 026036 227 AGLEVKHLG 235 (244)
Q Consensus 227 ~Gf~v~~~~ 235 (244)
.|++++.+.
T Consensus 170 ~g~~i~~i~ 178 (204)
T 3njr_A 170 HGGQLLRID 178 (204)
T ss_dssp HCSEEEEEE
T ss_pred CCCcEEEEE
Confidence 999988875
|
| >3e05_A Precorrin-6Y C5,15-methyltransferase (decarboxyla; porphyrin metabolism, S-adenosyl-methionine; 1.80A {Geobacter metallireducens} SCOP: c.66.1.0 | Back alignment and structure |
|---|
Probab=99.71 E-value=1e-15 Score=119.89 Aligned_cols=133 Identities=15% Similarity=0.065 Sum_probs=97.9
Q ss_pred HHHhhccCcccCCeEEEeCCCCcHHHHHHHHhC-CCeEEEEeCChHHHHHHHHHhHHhcCCCCCcceEeeecCCCCCCCC
Q 026036 67 EWLMHHREWIERRRCIELGSGTGALAIFLRKAM-NLDITTSDYNDQEIEDNIAYNSTTNGITPALPHIKHSWGDAFPIPN 145 (244)
Q Consensus 67 ~~~~~~~~~~~~~~VLdlG~G~G~~~~~~a~~~-~~~v~~~D~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 145 (244)
..+.......++.+|||+|||+|.++..+++.+ ..+|+++|+++.++ +.++++...+++ .++..+..+..+..+ ..
T Consensus 30 ~~~l~~l~~~~~~~vLDiG~G~G~~~~~la~~~~~~~v~~vD~s~~~~-~~a~~~~~~~~~-~~v~~~~~d~~~~~~-~~ 106 (204)
T 3e05_A 30 AVTLSKLRLQDDLVMWDIGAGSASVSIEASNLMPNGRIFALERNPQYL-GFIRDNLKKFVA-RNVTLVEAFAPEGLD-DL 106 (204)
T ss_dssp HHHHHHTTCCTTCEEEEETCTTCHHHHHHHHHCTTSEEEEEECCHHHH-HHHHHHHHHHTC-TTEEEEECCTTTTCT-TS
T ss_pred HHHHHHcCCCCCCEEEEECCCCCHHHHHHHHHCCCCEEEEEeCCHHHH-HHHHHHHHHhCC-CcEEEEeCChhhhhh-cC
Confidence 344444556688899999999999999999886 58999999999987 888888887776 334444444333222 22
Q ss_pred CCccEEEEcccccCCcChHHHHHHHHHHHHhcCCCCceEeecccccCCCCCCCCCCCeEEEeeeeccCccchhhHHHHHh
Q 026036 146 PDWDLILASDILLYVKQYSNLIKSLSVLLKSYKPKDSQVGHLTKNEQGEGTEGLPWPAFLMSWRRRIGKEDETIFFTSCE 225 (244)
Q Consensus 146 ~~fD~I~~~~~l~~~~~~~~l~~~l~~~~~~lk~gG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 225 (244)
++||+|++..++ . ...+.++++.+.|||||++++..... .....+.+.++
T Consensus 107 ~~~D~i~~~~~~-~-----~~~~~l~~~~~~LkpgG~l~~~~~~~------------------------~~~~~~~~~l~ 156 (204)
T 3e05_A 107 PDPDRVFIGGSG-G-----MLEEIIDAVDRRLKSEGVIVLNAVTL------------------------DTLTKAVEFLE 156 (204)
T ss_dssp CCCSEEEESCCT-T-----CHHHHHHHHHHHCCTTCEEEEEECBH------------------------HHHHHHHHHHH
T ss_pred CCCCEEEECCCC-c-----CHHHHHHHHHHhcCCCeEEEEEeccc------------------------ccHHHHHHHHH
Confidence 579999998876 2 34489999999999999888752111 12467888999
Q ss_pred hcCCeEE
Q 026036 226 NAGLEVK 232 (244)
Q Consensus 226 ~~Gf~v~ 232 (244)
++||+++
T Consensus 157 ~~g~~~~ 163 (204)
T 3e05_A 157 DHGYMVE 163 (204)
T ss_dssp HTTCEEE
T ss_pred HCCCcee
Confidence 9998544
|
| >1pjz_A Thiopurine S-methyltransferase; polymorphism, S-adenosylmethionine, drug metabolism; NMR {Pseudomonas syringae PV} SCOP: c.66.1.36 | Back alignment and structure |
|---|
Probab=99.71 E-value=4e-17 Score=128.02 Aligned_cols=153 Identities=8% Similarity=0.039 Sum_probs=99.0
Q ss_pred HHHHHHhhccCcccCCeEEEeCCCCcHHHHHHHHhCCCeEEEEeCChHHHHHHHHHhHHhcC-----------CCCCcce
Q 026036 64 SFAEWLMHHREWIERRRCIELGSGTGALAIFLRKAMNLDITTSDYNDQEIEDNIAYNSTTNG-----------ITPALPH 132 (244)
Q Consensus 64 ~l~~~~~~~~~~~~~~~VLdlG~G~G~~~~~~a~~~~~~v~~~D~~~~~l~~~~~~~~~~~~-----------~~~~~~~ 132 (244)
.+.+++... ...++.+|||+|||+|..+..+++. +.+|+|+|+|+.|+ +.++++..... ...++..
T Consensus 10 ~l~~~~~~l-~~~~~~~vLD~GCG~G~~~~~la~~-g~~V~gvD~S~~~l-~~a~~~~~~~~~~~~~~~~~~~~~~~v~~ 86 (203)
T 1pjz_A 10 DLQQYWSSL-NVVPGARVLVPLCGKSQDMSWLSGQ-GYHVVGAELSEAAV-ERYFTERGEQPHITSQGDFKVYAAPGIEI 86 (203)
T ss_dssp HHHHHHHHH-CCCTTCEEEETTTCCSHHHHHHHHH-CCEEEEEEECHHHH-HHHHHHHCSCSEEEEETTEEEEECSSSEE
T ss_pred HHHHHHHhc-ccCCCCEEEEeCCCCcHhHHHHHHC-CCeEEEEeCCHHHH-HHHHHHccCCcccccccccccccCCccEE
Confidence 455554332 3347789999999999999999987 67999999999998 66665543210 0112333
Q ss_pred EeeecCCCCCCCC-CCccEEEEcccccCCcChHHHHHHHHHHHHhcCCCCceEeecccccCCCCCCCCCCCeEEEeeeec
Q 026036 133 IKHSWGDAFPIPN-PDWDLILASDILLYVKQYSNLIKSLSVLLKSYKPKDSQVGHLTKNEQGEGTEGLPWPAFLMSWRRR 211 (244)
Q Consensus 133 ~~~~~~~~~~~~~-~~fD~I~~~~~l~~~~~~~~l~~~l~~~~~~lk~gG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 211 (244)
+..+..+ ++..+ ++||+|++..++ ++...+...+.+++++++|||||++++.+....... . ..+ .
T Consensus 87 ~~~d~~~-l~~~~~~~fD~v~~~~~l-~~l~~~~~~~~l~~~~r~LkpgG~~~l~~~~~~~~~--~--~~~--------~ 152 (203)
T 1pjz_A 87 WCGDFFA-LTARDIGHCAAFYDRAAM-IALPADMRERYVQHLEALMPQACSGLLITLEYDQAL--L--EGP--------P 152 (203)
T ss_dssp EEECCSS-STHHHHHSEEEEEEESCG-GGSCHHHHHHHHHHHHHHSCSEEEEEEEEESSCSSS--S--SSC--------C
T ss_pred EECcccc-CCcccCCCEEEEEECcch-hhCCHHHHHHHHHHHHHHcCCCcEEEEEEEecCccc--c--CCC--------C
Confidence 3333322 23323 689999998887 444455666899999999999999555543332110 0 001 1
Q ss_pred cCccchhhHHHHHhhcCCeEEEec
Q 026036 212 IGKEDETIFFTSCENAGLEVKHLG 235 (244)
Q Consensus 212 ~~~~~~~~~~~~l~~~Gf~v~~~~ 235 (244)
+. .+.+++.++++. ||+++.+.
T Consensus 153 ~~-~~~~el~~~~~~-gf~i~~~~ 174 (203)
T 1pjz_A 153 FS-VPQTWLHRVMSG-NWEVTKVG 174 (203)
T ss_dssp CC-CCHHHHHHTSCS-SEEEEEEE
T ss_pred CC-CCHHHHHHHhcC-CcEEEEec
Confidence 11 124678888888 99988764
|
| >3grz_A L11 mtase, ribosomal protein L11 methyltransferase; methylase, SAM-binding domain, PSI-2, nysgxrc; 2.00A {Lactobacillus delbrueckii subsp} | Back alignment and structure |
|---|
Probab=99.71 E-value=1.2e-16 Score=125.14 Aligned_cols=142 Identities=15% Similarity=0.112 Sum_probs=106.3
Q ss_pred eechHHHHHHHHhhccCcccCCeEEEeCCCCcHHHHHHHHhCCCeEEEEeCChHHHHHHHHHhHHhcCCCCCcceEeeec
Q 026036 58 LWPGTFSFAEWLMHHREWIERRRCIELGSGTGALAIFLRKAMNLDITTSDYNDQEIEDNIAYNSTTNGITPALPHIKHSW 137 (244)
Q Consensus 58 ~w~~~~~l~~~~~~~~~~~~~~~VLdlG~G~G~~~~~~a~~~~~~v~~~D~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~ 137 (244)
..+....+.+++.... .++.+|||+|||+|.++..+++.+..+|+++|+++.++ +.++++...++... +..+.
T Consensus 43 ~~~~~~~~~~~l~~~~--~~~~~vLDiG~G~G~~~~~l~~~~~~~v~~vD~s~~~~-~~a~~~~~~~~~~~-v~~~~--- 115 (205)
T 3grz_A 43 NHQTTQLAMLGIERAM--VKPLTVADVGTGSGILAIAAHKLGAKSVLATDISDESM-TAAEENAALNGIYD-IALQK--- 115 (205)
T ss_dssp CHHHHHHHHHHHHHHC--SSCCEEEEETCTTSHHHHHHHHTTCSEEEEEESCHHHH-HHHHHHHHHTTCCC-CEEEE---
T ss_pred CCccHHHHHHHHHHhc--cCCCEEEEECCCCCHHHHHHHHCCCCEEEEEECCHHHH-HHHHHHHHHcCCCc-eEEEe---
Confidence 4466666777766543 36789999999999999999876566999999999987 88888888777643 34443
Q ss_pred CCCCCCCCCCccEEEEcccccCCcChHHHHHHHHHHHHhcCCCCceEeecccccCCCCCCCCCCCeEEEeeeeccCccch
Q 026036 138 GDAFPIPNPDWDLILASDILLYVKQYSNLIKSLSVLLKSYKPKDSQVGHLTKNEQGEGTEGLPWPAFLMSWRRRIGKEDE 217 (244)
Q Consensus 138 ~~~~~~~~~~fD~I~~~~~l~~~~~~~~l~~~l~~~~~~lk~gG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 217 (244)
++..+...++||+|+++.++ ..+.+.++++.+.|+|||++++..... ...
T Consensus 116 ~d~~~~~~~~fD~i~~~~~~------~~~~~~l~~~~~~L~~gG~l~~~~~~~------------------------~~~ 165 (205)
T 3grz_A 116 TSLLADVDGKFDLIVANILA------EILLDLIPQLDSHLNEDGQVIFSGIDY------------------------LQL 165 (205)
T ss_dssp SSTTTTCCSCEEEEEEESCH------HHHHHHGGGSGGGEEEEEEEEEEEEEG------------------------GGH
T ss_pred ccccccCCCCceEEEECCcH------HHHHHHHHHHHHhcCCCCEEEEEecCc------------------------ccH
Confidence 34344455789999998765 234588999999999999887751111 124
Q ss_pred hhHHHHHhhcCCeEEEecc
Q 026036 218 TIFFTSCENAGLEVKHLGS 236 (244)
Q Consensus 218 ~~~~~~l~~~Gf~v~~~~~ 236 (244)
..+.+.++++||+++.+..
T Consensus 166 ~~~~~~~~~~Gf~~~~~~~ 184 (205)
T 3grz_A 166 PKIEQALAENSFQIDLKMR 184 (205)
T ss_dssp HHHHHHHHHTTEEEEEEEE
T ss_pred HHHHHHHHHcCCceEEeec
Confidence 6788999999999887654
|
| >1ri5_A MRNA capping enzyme; methyltransferase, M7G, messenger RNA CAP, structural genomics, PSI, protein structure initiative; 2.10A {Encephalitozoon cuniculi} SCOP: c.66.1.34 PDB: 1ri2_A* 1ri3_A* 1ri1_A* 1ri4_A 1z3c_A* 2hv9_A* | Back alignment and structure |
|---|
Probab=99.71 E-value=1.9e-16 Score=130.72 Aligned_cols=113 Identities=11% Similarity=0.075 Sum_probs=86.8
Q ss_pred ccCCeEEEeCCCCcHHHHHHHHhCCCeEEEEeCChHHHHHHHHHhHHhcCCCCCcceEeeecCCCCCC-CCCCccEEEEc
Q 026036 76 IERRRCIELGSGTGALAIFLRKAMNLDITTSDYNDQEIEDNIAYNSTTNGITPALPHIKHSWGDAFPI-PNPDWDLILAS 154 (244)
Q Consensus 76 ~~~~~VLdlG~G~G~~~~~~a~~~~~~v~~~D~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~fD~I~~~ 154 (244)
.++.+|||+|||+|..+..++..+..+|+++|+++.++ +.++++....+...++..+..+..+ .++ .+++||+|++.
T Consensus 63 ~~~~~vLDiGcG~G~~~~~l~~~~~~~v~gvD~s~~~~-~~a~~~~~~~~~~~~v~~~~~d~~~-~~~~~~~~fD~v~~~ 140 (298)
T 1ri5_A 63 KRGDSVLDLGCGKGGDLLKYERAGIGEYYGVDIAEVSI-NDARVRARNMKRRFKVFFRAQDSYG-RHMDLGKEFDVISSQ 140 (298)
T ss_dssp CTTCEEEEETCTTTTTHHHHHHHTCSEEEEEESCHHHH-HHHHHHHHTSCCSSEEEEEESCTTT-SCCCCSSCEEEEEEE
T ss_pred CCCCeEEEECCCCCHHHHHHHHCCCCEEEEEECCHHHH-HHHHHHHHhcCCCccEEEEECCccc-cccCCCCCcCEEEEC
Confidence 47789999999999999888887666999999999987 7787777665553334444444432 233 45689999999
Q ss_pred ccccCC-cChHHHHHHHHHHHHhcCCCCceEeecccc
Q 026036 155 DILLYV-KQYSNLIKSLSVLLKSYKPKDSQVGHLTKN 190 (244)
Q Consensus 155 ~~l~~~-~~~~~l~~~l~~~~~~lk~gG~~~~~~~~~ 190 (244)
.++++. ...++..+.++++.++|||||++++.++..
T Consensus 141 ~~l~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~ 177 (298)
T 1ri5_A 141 FSFHYAFSTSESLDIAQRNIARHLRPGGYFIMTVPSR 177 (298)
T ss_dssp SCGGGGGSSHHHHHHHHHHHHHTEEEEEEEEEEEECH
T ss_pred chhhhhcCCHHHHHHHHHHHHHhcCCCCEEEEEECCH
Confidence 998331 556778899999999999999999886543
|
| >2p7i_A Hypothetical protein; putative methyltransferase, structural genomics, joint cente structural genomics, JCSG; 1.74A {Pectobacterium atrosepticum SCRI1043} SCOP: c.66.1.41 PDB: 2p7h_A | Back alignment and structure |
|---|
Probab=99.70 E-value=7.2e-17 Score=129.64 Aligned_cols=148 Identities=16% Similarity=0.081 Sum_probs=99.5
Q ss_pred ccCCeEEEeCCCCcHHHHHHHHhCCCeEEEEeCChHHHHHHHHHhHHhcCCCCCcceEeeecCCCCCCCCCCccEEEEcc
Q 026036 76 IERRRCIELGSGTGALAIFLRKAMNLDITTSDYNDQEIEDNIAYNSTTNGITPALPHIKHSWGDAFPIPNPDWDLILASD 155 (244)
Q Consensus 76 ~~~~~VLdlG~G~G~~~~~~a~~~~~~v~~~D~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fD~I~~~~ 155 (244)
.++.+|||||||+|.++..+++. +.+|+++|+++.++ +.++++... ++..+..+..+. ..+++||+|++.+
T Consensus 41 ~~~~~vLDiGcG~G~~~~~l~~~-~~~v~gvD~s~~~~-~~a~~~~~~-----~v~~~~~d~~~~--~~~~~fD~v~~~~ 111 (250)
T 2p7i_A 41 FRPGNLLELGSFKGDFTSRLQEH-FNDITCVEASEEAI-SHAQGRLKD-----GITYIHSRFEDA--QLPRRYDNIVLTH 111 (250)
T ss_dssp CCSSCEEEESCTTSHHHHHHTTT-CSCEEEEESCHHHH-HHHHHHSCS-----CEEEEESCGGGC--CCSSCEEEEEEES
T ss_pred cCCCcEEEECCCCCHHHHHHHHh-CCcEEEEeCCHHHH-HHHHHhhhC-----CeEEEEccHHHc--CcCCcccEEEEhh
Confidence 46789999999999999999876 56899999999987 666655432 233443333332 3457899999999
Q ss_pred cccCCcChHHHHHHHHHHH-HhcCCCCceEeecccccCCC------CCCCCCCCeE-----EEeeeeccCccchhhHHHH
Q 026036 156 ILLYVKQYSNLIKSLSVLL-KSYKPKDSQVGHLTKNEQGE------GTEGLPWPAF-----LMSWRRRIGKEDETIFFTS 223 (244)
Q Consensus 156 ~l~~~~~~~~l~~~l~~~~-~~lk~gG~~~~~~~~~~~~~------~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~ 223 (244)
++++. ++..++++++. ++|||||++++.++...... .........+ ...+...+ +..++.++
T Consensus 112 ~l~~~---~~~~~~l~~~~~~~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~ 185 (250)
T 2p7i_A 112 VLEHI---DDPVALLKRINDDWLAEGGRLFLVCPNANAVSRQIAVKMGIISHNSAVTEAEFAHGHRCTY---ALDTLERD 185 (250)
T ss_dssp CGGGC---SSHHHHHHHHHHTTEEEEEEEEEEEECTTCHHHHHHHHTTSSSSTTCCCHHHHHTTCCCCC---CHHHHHHH
T ss_pred HHHhh---cCHHHHHHHHHHHhcCCCCEEEEEcCChHHHHHHHHHHcCccccchhcccccccccccccC---CHHHHHHH
Confidence 99443 33459999999 99999999999865443210 0000000000 00111112 35789999
Q ss_pred HhhcCCeEEEeccEE
Q 026036 224 CENAGLEVKHLGSRV 238 (244)
Q Consensus 224 l~~~Gf~v~~~~~~~ 238 (244)
++++||+++++....
T Consensus 186 l~~~Gf~~~~~~~~~ 200 (250)
T 2p7i_A 186 ASRAGLQVTYRSGIF 200 (250)
T ss_dssp HHHTTCEEEEEEEEE
T ss_pred HHHCCCeEEEEeeeE
Confidence 999999999886543
|
| >1y8c_A S-adenosylmethionine-dependent methyltransferase; structural genomics, protein structure initiative, PSI; 2.50A {Clostridium acetobutylicum} SCOP: c.66.1.43 | Back alignment and structure |
|---|
Probab=99.70 E-value=2.2e-16 Score=126.63 Aligned_cols=107 Identities=15% Similarity=0.151 Sum_probs=81.6
Q ss_pred cCCeEEEeCCCCcHHHHHHHHhCCCeEEEEeCChHHHHHHHHHhHHhcCCCCCcceEeeecCCCCCCCCCCccEEEEcc-
Q 026036 77 ERRRCIELGSGTGALAIFLRKAMNLDITTSDYNDQEIEDNIAYNSTTNGITPALPHIKHSWGDAFPIPNPDWDLILASD- 155 (244)
Q Consensus 77 ~~~~VLdlG~G~G~~~~~~a~~~~~~v~~~D~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fD~I~~~~- 155 (244)
++.+|||+|||+|.++..+++. +.+|+++|+++.++ +.++++....+. ++..+..+..+ .+.. ++||+|+++.
T Consensus 37 ~~~~vLdiG~G~G~~~~~l~~~-~~~~~~~D~s~~~~-~~a~~~~~~~~~--~~~~~~~d~~~-~~~~-~~fD~v~~~~~ 110 (246)
T 1y8c_A 37 VFDDYLDLACGTGNLTENLCPK-FKNTWAVDLSQEML-SEAENKFRSQGL--KPRLACQDISN-LNIN-RKFDLITCCLD 110 (246)
T ss_dssp CTTEEEEETCTTSTTHHHHGGG-SSEEEEECSCHHHH-HHHHHHHHHTTC--CCEEECCCGGG-CCCS-CCEEEEEECTT
T ss_pred CCCeEEEeCCCCCHHHHHHHHC-CCcEEEEECCHHHH-HHHHHHHhhcCC--CeEEEeccccc-CCcc-CCceEEEEcCc
Confidence 6789999999999999999877 67899999999987 777777665443 23333333322 2333 6899999997
Q ss_pred cccCCcChHHHHHHHHHHHHhcCCCCceEeeccc
Q 026036 156 ILLYVKQYSNLIKSLSVLLKSYKPKDSQVGHLTK 189 (244)
Q Consensus 156 ~l~~~~~~~~l~~~l~~~~~~lk~gG~~~~~~~~ 189 (244)
++.+....+++.+.++++.++|||||++++.++.
T Consensus 111 ~l~~~~~~~~~~~~l~~~~~~L~pgG~l~~~~~~ 144 (246)
T 1y8c_A 111 STNYIIDSDDLKKYFKAVSNHLKEGGVFIFDINS 144 (246)
T ss_dssp GGGGCCSHHHHHHHHHHHHTTEEEEEEEEEEEEC
T ss_pred cccccCCHHHHHHHHHHHHHhcCCCcEEEEEecC
Confidence 8854434467889999999999999999986443
|
| >3g07_A 7SK snRNA methylphosphate capping enzyme; structural genomics consortium (SGC), methyltransferase, phosphoprotein, S-adenosyl-L-methionine; HET: SAM; 2.65A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.70 E-value=1.5e-17 Score=137.71 Aligned_cols=153 Identities=12% Similarity=0.125 Sum_probs=97.2
Q ss_pred ccCCeEEEeCCCCcHHHHHHHHhC-CCeEEEEeCChHHHHHHHHHhHHhcCCC---------------------------
Q 026036 76 IERRRCIELGSGTGALAIFLRKAM-NLDITTSDYNDQEIEDNIAYNSTTNGIT--------------------------- 127 (244)
Q Consensus 76 ~~~~~VLdlG~G~G~~~~~~a~~~-~~~v~~~D~~~~~l~~~~~~~~~~~~~~--------------------------- 127 (244)
.++.+|||||||+|.+++.++... +.+|+|+|+++.++ +.+++++......
T Consensus 45 ~~~~~VLDiGCG~G~~~~~la~~~~~~~v~gvDis~~~i-~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 123 (292)
T 3g07_A 45 FRGRDVLDLGCNVGHLTLSIACKWGPSRMVGLDIDSRLI-HSARQNIRHYLSEELRLPPQTLEGDPGAEGEEGTTTVRKR 123 (292)
T ss_dssp TTTSEEEEESCTTCHHHHHHHHHTCCSEEEEEESCHHHH-HHHHHTC---------------------------------
T ss_pred cCCCcEEEeCCCCCHHHHHHHHHcCCCEEEEECCCHHHH-HHHHHHHHhhhhhhcccccccccccccccccccccccccc
Confidence 478899999999999999999885 67999999999987 7777765543211
Q ss_pred ------------------------------CCcceEeeecCCCC----CCCCCCccEEEEcccccCCc----ChHHHHHH
Q 026036 128 ------------------------------PALPHIKHSWGDAF----PIPNPDWDLILASDILLYVK----QYSNLIKS 169 (244)
Q Consensus 128 ------------------------------~~~~~~~~~~~~~~----~~~~~~fD~I~~~~~l~~~~----~~~~l~~~ 169 (244)
.++..+..++.+.. +...++||+|+|..++ ++. ....+.++
T Consensus 124 ~~~p~~~~~~~g~~~~p~~~~~~~~~~~~p~~v~f~~~d~~~~~~~~~~~~~~~fD~I~~~~vl-~~ihl~~~~~~~~~~ 202 (292)
T 3g07_A 124 SCFPASLTASRGPIAAPQVPLDGADTSVFPNNVVFVTGNYVLDRDDLVEAQTPEYDVVLCLSLT-KWVHLNWGDEGLKRM 202 (292)
T ss_dssp ------------------CCSSTTCCSSTTTTEEEEECCCCCSSHHHHTTCCCCEEEEEEESCH-HHHHHHHHHHHHHHH
T ss_pred ccccchhhhccCccccccccccccccccccccceEEecccccCccccccccCCCcCEEEEChHH-HHhhhcCCHHHHHHH
Confidence 23333333333221 2346789999999998 322 33467799
Q ss_pred HHHHHHhcCCCCceEeecccccCCCCCCCCCCCeEEEee-eeccCccchhhHHHHHhh--cCCeEEEe
Q 026036 170 LSVLLKSYKPKDSQVGHLTKNEQGEGTEGLPWPAFLMSW-RRRIGKEDETIFFTSCEN--AGLEVKHL 234 (244)
Q Consensus 170 l~~~~~~lk~gG~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~l~~--~Gf~v~~~ 234 (244)
+++++++|+|||++++....+....... .....+.-.+ ...+. .++|.++|.+ +||+..++
T Consensus 203 l~~~~~~LkpGG~lil~~~~~~~y~~~~-~~~~~~~~~~~~~~~~---p~~~~~~L~~~~~GF~~~~~ 266 (292)
T 3g07_A 203 FRRIYRHLRPGGILVLEPQPWSSYGKRK-TLTETIYKNYYRIQLK---PEQFSSYLTSPDVGFSSYEL 266 (292)
T ss_dssp HHHHHHHEEEEEEEEEECCCHHHHHTTT-TSCHHHHHHHHHCCCC---GGGHHHHHTSTTTCCCEEEE
T ss_pred HHHHHHHhCCCcEEEEecCCchhhhhhh-cccHHHHhhhhcEEEc---HHHHHHHHHhcCCCceEEEE
Confidence 9999999999999988633322111000 0000000001 11121 4789999998 99976554
|
| >3pfg_A N-methyltransferase; N,N-dimethyltransferase, SAM binding, DTDP-linked sugar BIND transferase; HET: SAM TLO; 1.35A {Streptomyces fradiae} PDB: 3pfh_A* 3px3_A* 3px2_A* | Back alignment and structure |
|---|
Probab=99.70 E-value=2.8e-16 Score=127.74 Aligned_cols=113 Identities=11% Similarity=0.066 Sum_probs=82.9
Q ss_pred HHHHHHHhhccCcccCCeEEEeCCCCcHHHHHHHHhCCCeEEEEeCChHHHHHHHHHhHHhcCCCCCcceEeeecCCCCC
Q 026036 63 FSFAEWLMHHREWIERRRCIELGSGTGALAIFLRKAMNLDITTSDYNDQEIEDNIAYNSTTNGITPALPHIKHSWGDAFP 142 (244)
Q Consensus 63 ~~l~~~~~~~~~~~~~~~VLdlG~G~G~~~~~~a~~~~~~v~~~D~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 142 (244)
..+.+.+.... .++.+|||||||+|.++..++.. +.+|+++|+++.++ +.++++.. ++..+..+..+ ++
T Consensus 38 ~~~~~~l~~~~--~~~~~vLDiGcG~G~~~~~l~~~-~~~v~gvD~s~~~~-~~a~~~~~------~~~~~~~d~~~-~~ 106 (263)
T 3pfg_A 38 ADLAALVRRHS--PKAASLLDVACGTGMHLRHLADS-FGTVEGLELSADML-AIARRRNP------DAVLHHGDMRD-FS 106 (263)
T ss_dssp HHHHHHHHHHC--TTCCEEEEETCTTSHHHHHHTTT-SSEEEEEESCHHHH-HHHHHHCT------TSEEEECCTTT-CC
T ss_pred HHHHHHHHhhC--CCCCcEEEeCCcCCHHHHHHHHc-CCeEEEEECCHHHH-HHHHhhCC------CCEEEECChHH-CC
Confidence 34445554433 25689999999999999999876 67999999999987 66666532 23344444433 23
Q ss_pred CCCCCccEEEEcc-cccCCcChHHHHHHHHHHHHhcCCCCceEeec
Q 026036 143 IPNPDWDLILASD-ILLYVKQYSNLIKSLSVLLKSYKPKDSQVGHL 187 (244)
Q Consensus 143 ~~~~~fD~I~~~~-~l~~~~~~~~l~~~l~~~~~~lk~gG~~~~~~ 187 (244)
. +++||+|+++. ++.+.....++.++++++.+.|||||++++..
T Consensus 107 ~-~~~fD~v~~~~~~l~~~~~~~~~~~~l~~~~~~L~pgG~l~i~~ 151 (263)
T 3pfg_A 107 L-GRRFSAVTCMFSSIGHLAGQAELDAALERFAAHVLPDGVVVVEP 151 (263)
T ss_dssp C-SCCEEEEEECTTGGGGSCHHHHHHHHHHHHHHTEEEEEEEEECC
T ss_pred c-cCCcCEEEEcCchhhhcCCHHHHHHHHHHHHHhcCCCcEEEEEe
Confidence 3 57899999997 88444344677799999999999999999863
|
| >3ocj_A Putative exported protein; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; HET: PLM; 1.39A {Bordetella parapertussis} | Back alignment and structure |
|---|
Probab=99.70 E-value=6.3e-17 Score=134.62 Aligned_cols=152 Identities=10% Similarity=0.129 Sum_probs=107.2
Q ss_pred cccCCeEEEeCCCCcHHHHHHH--HhCCCeEEEEeCChHHHHHHHHHhHHhcCCCCCcceEeeecCCCCCCCCCCccEEE
Q 026036 75 WIERRRCIELGSGTGALAIFLR--KAMNLDITTSDYNDQEIEDNIAYNSTTNGITPALPHIKHSWGDAFPIPNPDWDLIL 152 (244)
Q Consensus 75 ~~~~~~VLdlG~G~G~~~~~~a--~~~~~~v~~~D~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fD~I~ 152 (244)
..++.+|||||||+|..+..++ ...+.+|+++|+++.++ +.++++...++...++..+..+..+ .++. ++||+|+
T Consensus 116 l~~~~~vLDiGcG~G~~~~~la~~~~~~~~v~gvD~s~~~~-~~a~~~~~~~~~~~~v~~~~~d~~~-~~~~-~~fD~v~ 192 (305)
T 3ocj_A 116 LRPGCVVASVPCGWMSELLALDYSACPGVQLVGIDYDPEAL-DGATRLAAGHALAGQITLHRQDAWK-LDTR-EGYDLLT 192 (305)
T ss_dssp CCTTCEEEETTCTTCHHHHTSCCTTCTTCEEEEEESCHHHH-HHHHHHHTTSTTGGGEEEEECCGGG-CCCC-SCEEEEE
T ss_pred CCCCCEEEEecCCCCHHHHHHHHhcCCCCeEEEEECCHHHH-HHHHHHHHhcCCCCceEEEECchhc-CCcc-CCeEEEE
Confidence 3478899999999999998885 33377999999999987 8888888777665445555554433 3444 7899999
Q ss_pred EcccccCCcChHHHHHHHHHHHHhcCCCCceEeecccccCCCCCCCCCCCeEEE--------------------eeeecc
Q 026036 153 ASDILLYVKQYSNLIKSLSVLLKSYKPKDSQVGHLTKNEQGEGTEGLPWPAFLM--------------------SWRRRI 212 (244)
Q Consensus 153 ~~~~l~~~~~~~~l~~~l~~~~~~lk~gG~~~~~~~~~~~~~~~~~~~~~~~~~--------------------~~~~~~ 212 (244)
++.++++........+.++++.+.|||||++++............. .|.. .+...+
T Consensus 193 ~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~----~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 268 (305)
T 3ocj_A 193 SNGLNIYEPDDARVTELYRRFWQALKPGGALVTSFLTPPPALSPDS----PWDMQAIDPHDLQLQQLVFTRLIQPRWNAL 268 (305)
T ss_dssp CCSSGGGCCCHHHHHHHHHHHHHHEEEEEEEEEECCCCCTTTCTTC----CCCGGGSCHHHHHHHHHHHHHTTCCSCCCC
T ss_pred ECChhhhcCCHHHHHHHHHHHHHhcCCCeEEEEEecCCCCcccccc----cceeeccccchhhhhhhHHHHHHhhhhhcc
Confidence 9999865555565567899999999999999987543322211111 0110 000011
Q ss_pred CccchhhHHHHHhhcCCeEEEec
Q 026036 213 GKEDETIFFTSCENAGLEVKHLG 235 (244)
Q Consensus 213 ~~~~~~~~~~~l~~~Gf~v~~~~ 235 (244)
.+.+++.++++++||+++++.
T Consensus 269 --~~~~~~~~~l~~aGF~~v~~~ 289 (305)
T 3ocj_A 269 --RTHAQTRAQLEEAGFTDLRFE 289 (305)
T ss_dssp --CCHHHHHHHHHHTTCEEEEEE
T ss_pred --CCHHHHHHHHHHCCCEEEEEE
Confidence 235889999999999998876
|
| >1ve3_A Hypothetical protein PH0226; dimer, riken structural genomics/proteomics initiative, RSGI, structural genomics, unknown function, NPPSFA; HET: SAM; 2.10A {Pyrococcus horikoshii} SCOP: c.66.1.43 | Back alignment and structure |
|---|
Probab=99.70 E-value=3.8e-16 Score=123.94 Aligned_cols=120 Identities=13% Similarity=0.230 Sum_probs=88.4
Q ss_pred HHHHHHHHhhccCcccCCeEEEeCCCCcHHHHHHHHhCCCeEEEEeCChHHHHHHHHHhHHhcCCCCCcceEeeecCCCC
Q 026036 62 TFSFAEWLMHHREWIERRRCIELGSGTGALAIFLRKAMNLDITTSDYNDQEIEDNIAYNSTTNGITPALPHIKHSWGDAF 141 (244)
Q Consensus 62 ~~~l~~~~~~~~~~~~~~~VLdlG~G~G~~~~~~a~~~~~~v~~~D~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 141 (244)
...+.+.+..... ++.+|||+|||+|.++..++.. +.+|+++|+++.++ +.++++...++ .++..+..+..+ .
T Consensus 25 ~~~~~~~l~~~~~--~~~~vLDlG~G~G~~~~~l~~~-~~~v~~vD~s~~~~-~~a~~~~~~~~--~~~~~~~~d~~~-~ 97 (227)
T 1ve3_A 25 IETLEPLLMKYMK--KRGKVLDLACGVGGFSFLLEDY-GFEVVGVDISEDMI-RKAREYAKSRE--SNVEFIVGDARK-L 97 (227)
T ss_dssp HHHHHHHHHHSCC--SCCEEEEETCTTSHHHHHHHHT-TCEEEEEESCHHHH-HHHHHHHHHTT--CCCEEEECCTTS-C
T ss_pred HHHHHHHHHHhcC--CCCeEEEEeccCCHHHHHHHHc-CCEEEEEECCHHHH-HHHHHHHHhcC--CCceEEECchhc-C
Confidence 4445555555443 4789999999999999999877 45999999999987 77877776554 234444444432 3
Q ss_pred CCCCCCccEEEEcccccCCcChHHHHHHHHHHHHhcCCCCceEeeccc
Q 026036 142 PIPNPDWDLILASDILLYVKQYSNLIKSLSVLLKSYKPKDSQVGHLTK 189 (244)
Q Consensus 142 ~~~~~~fD~I~~~~~l~~~~~~~~l~~~l~~~~~~lk~gG~~~~~~~~ 189 (244)
+..+++||+|++++++ +....++..+.++++.+.|+|||++++..+.
T Consensus 98 ~~~~~~~D~v~~~~~~-~~~~~~~~~~~l~~~~~~L~~gG~l~~~~~~ 144 (227)
T 1ve3_A 98 SFEDKTFDYVIFIDSI-VHFEPLELNQVFKEVRRVLKPSGKFIMYFTD 144 (227)
T ss_dssp CSCTTCEEEEEEESCG-GGCCHHHHHHHHHHHHHHEEEEEEEEEEEEC
T ss_pred CCCCCcEEEEEEcCch-HhCCHHHHHHHHHHHHHHcCCCcEEEEEecC
Confidence 4445689999999994 2234566779999999999999999888544
|
| >3ege_A Putative methyltransferase from antibiotic biosyn pathway; YP_324569.1, putative methyltransferase from antibiotic BIOS pathway; 2.40A {Anabaena variabilis atcc 29413} | Back alignment and structure |
|---|
Probab=99.70 E-value=2.1e-17 Score=134.53 Aligned_cols=158 Identities=9% Similarity=0.017 Sum_probs=103.7
Q ss_pred HHHHHHhhccCcccCCeEEEeCCCCcHHHHHHHHhCCCeEEEEeCChHHHHHHHHHhHHhcCCCCCcceEeeecCCCCCC
Q 026036 64 SFAEWLMHHREWIERRRCIELGSGTGALAIFLRKAMNLDITTSDYNDQEIEDNIAYNSTTNGITPALPHIKHSWGDAFPI 143 (244)
Q Consensus 64 ~l~~~~~~~~~~~~~~~VLdlG~G~G~~~~~~a~~~~~~v~~~D~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 143 (244)
.+.+.+.......++.+|||||||+|..+..+++. +.+|+|+|+|+.++ +.++.+. ++..+..+. ..+++
T Consensus 21 ~~~~~l~~~~~~~~~~~vLDiGcG~G~~~~~l~~~-~~~v~gvD~s~~~~-~~a~~~~-------~~~~~~~d~-~~~~~ 90 (261)
T 3ege_A 21 RIVNAIINLLNLPKGSVIADIGAGTGGYSVALANQ-GLFVYAVEPSIVMR-QQAVVHP-------QVEWFTGYA-ENLAL 90 (261)
T ss_dssp HHHHHHHHHHCCCTTCEEEEETCTTSHHHHHHHTT-TCEEEEECSCHHHH-HSSCCCT-------TEEEECCCT-TSCCS
T ss_pred HHHHHHHHHhCCCCCCEEEEEcCcccHHHHHHHhC-CCEEEEEeCCHHHH-HHHHhcc-------CCEEEECch-hhCCC
Confidence 45666666555567889999999999999999874 78999999999886 4443322 233333333 23456
Q ss_pred CCCCccEEEEcccccCCcChHHHHHHHHHHHHhcCCCCceEeecccccCCCCCCC-CCCCeEEEeeeeccCccchhhHHH
Q 026036 144 PNPDWDLILASDILLYVKQYSNLIKSLSVLLKSYKPKDSQVGHLTKNEQGEGTEG-LPWPAFLMSWRRRIGKEDETIFFT 222 (244)
Q Consensus 144 ~~~~fD~I~~~~~l~~~~~~~~l~~~l~~~~~~lk~gG~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~ 222 (244)
.+++||+|++..++++. ++..+.++++.++|| ||++++............. ...+.........+. +...+.
T Consensus 91 ~~~~fD~v~~~~~l~~~---~~~~~~l~~~~~~Lk-gG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~- 163 (261)
T 3ege_A 91 PDKSVDGVISILAIHHF---SHLEKSFQEMQRIIR-DGTIVLLTFDIRLAQRIWLYDYFPFLWEDALRFLP--LDEQIN- 163 (261)
T ss_dssp CTTCBSEEEEESCGGGC---SSHHHHHHHHHHHBC-SSCEEEEEECGGGCCCCGGGGTCHHHHHHHHTSCC--HHHHHH-
T ss_pred CCCCEeEEEEcchHhhc---cCHHHHHHHHHHHhC-CcEEEEEEcCCchhHHHHHHHHHHHHhhhhhhhCC--CHHHHH-
Confidence 67899999999999443 455599999999999 9998888654432221110 000000001111222 246677
Q ss_pred HHhhcCCeEEEeccEE
Q 026036 223 SCENAGLEVKHLGSRV 238 (244)
Q Consensus 223 ~l~~~Gf~v~~~~~~~ 238 (244)
+++++||+++.+....
T Consensus 164 ~l~~aGF~~v~~~~~~ 179 (261)
T 3ege_A 164 LLQENTKRRVEAIPFL 179 (261)
T ss_dssp HHHHHHCSEEEEEECC
T ss_pred HHHHcCCCceeEEEec
Confidence 9999999888775443
|
| >3hnr_A Probable methyltransferase BT9727_4108; structural genomics, PSI-2, protein structure initiative; 2.80A {Bacillus thuringiensis serovarkonkukian} | Back alignment and structure |
|---|
Probab=99.69 E-value=3.4e-16 Score=123.79 Aligned_cols=148 Identities=13% Similarity=0.052 Sum_probs=97.2
Q ss_pred cCCeEEEeCCCCcHHHHHHHHhCCCeEEEEeCChHHHHHHHHHhHHhcCCCCCcceEeeecCCCCCCCCCCccEEEEccc
Q 026036 77 ERRRCIELGSGTGALAIFLRKAMNLDITTSDYNDQEIEDNIAYNSTTNGITPALPHIKHSWGDAFPIPNPDWDLILASDI 156 (244)
Q Consensus 77 ~~~~VLdlG~G~G~~~~~~a~~~~~~v~~~D~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fD~I~~~~~ 156 (244)
++.+|||+|||+|.++..++.. +.+|+++|+++.++ +.++++.. .++..+..+..+ ++.. ++||+|+++.+
T Consensus 45 ~~~~vLDiGcG~G~~~~~l~~~-~~~v~~vD~s~~~~-~~a~~~~~-----~~~~~~~~d~~~-~~~~-~~fD~v~~~~~ 115 (220)
T 3hnr_A 45 SFGNVLEFGVGTGNLTNKLLLA-GRTVYGIEPSREMR-MIAKEKLP-----KEFSITEGDFLS-FEVP-TSIDTIVSTYA 115 (220)
T ss_dssp CCSEEEEECCTTSHHHHHHHHT-TCEEEEECSCHHHH-HHHHHHSC-----TTCCEESCCSSS-CCCC-SCCSEEEEESC
T ss_pred CCCeEEEeCCCCCHHHHHHHhC-CCeEEEEeCCHHHH-HHHHHhCC-----CceEEEeCChhh-cCCC-CCeEEEEECcc
Confidence 6789999999999999999887 78999999999987 66666543 122344333322 3344 78999999999
Q ss_pred ccCCcChHHHHHHHHHHHHhcCCCCceEeecccccCCCCCC-------CCCCCeEEEeeeeccCccchhhHHHHHhhcCC
Q 026036 157 LLYVKQYSNLIKSLSVLLKSYKPKDSQVGHLTKNEQGEGTE-------GLPWPAFLMSWRRRIGKEDETIFFTSCENAGL 229 (244)
Q Consensus 157 l~~~~~~~~l~~~l~~~~~~lk~gG~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gf 229 (244)
+ ++...+.....++++.+.|||||.+++..+......... ............+.+. .+.+++.++++++||
T Consensus 116 l-~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~l~~aGf 193 (220)
T 3hnr_A 116 F-HHLTDDEKNVAIAKYSQLLNKGGKIVFADTIFADQDAYDKTVEAAKQRGFHQLANDLQTEYY-TRIPVMQTIFENNGF 193 (220)
T ss_dssp G-GGSCHHHHHHHHHHHHHHSCTTCEEEEEEECBSSHHHHHHHHHHHHHTTCHHHHHHHHHSCC-CBHHHHHHHHHHTTE
T ss_pred h-hcCChHHHHHHHHHHHHhcCCCCEEEEEeccccChHHHHHHHHHHHhCCCccchhhcchhhc-CCHHHHHHHHHHCCC
Confidence 9 444444444599999999999999998853332211000 0000000000000111 135789999999999
Q ss_pred eEEEec
Q 026036 230 EVKHLG 235 (244)
Q Consensus 230 ~v~~~~ 235 (244)
+++.+.
T Consensus 194 ~v~~~~ 199 (220)
T 3hnr_A 194 HVTFTR 199 (220)
T ss_dssp EEEEEE
T ss_pred EEEEee
Confidence 988765
|
| >2i62_A Nicotinamide N-methyltransferase; structural genomics, structural genomics consortium, SGC; HET: SAH; 1.80A {Mus musculus} PDB: 2iip_A* 3rod_A* | Back alignment and structure |
|---|
Probab=99.69 E-value=2.7e-16 Score=127.73 Aligned_cols=151 Identities=17% Similarity=0.126 Sum_probs=99.5
Q ss_pred CcccCCeEEEeCCCCcHHHHHHHHhCCCeEEEEeCChHHHHHHHHHhHHhcCCC--------------------------
Q 026036 74 EWIERRRCIELGSGTGALAIFLRKAMNLDITTSDYNDQEIEDNIAYNSTTNGIT-------------------------- 127 (244)
Q Consensus 74 ~~~~~~~VLdlG~G~G~~~~~~a~~~~~~v~~~D~~~~~l~~~~~~~~~~~~~~-------------------------- 127 (244)
...++.+|||+|||+|.++..++..+..+|+++|+|+.++ +.++++...+...
T Consensus 53 ~~~~~~~vLDlGcG~G~~~~~l~~~~~~~v~gvD~s~~~l-~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 131 (265)
T 2i62_A 53 GAVKGELLIDIGSGPTIYQLLSACESFTEIIVSDYTDQNL-WELQKWLKKEPGAFDWSPVVTYVCDLEGNRMKGPEKEEK 131 (265)
T ss_dssp SSCCEEEEEEESCTTCCGGGTTGGGTEEEEEEEESCHHHH-HHHHHHHTTCTTCCCCHHHHHHHHHHTTTCSCHHHHHHH
T ss_pred cccCCCEEEEECCCccHHHHHHhhcccCeEEEecCCHHHH-HHHHHHHhcCCccccchhhhhhhhcccccccchHHHHHH
Confidence 3357789999999999999888776445899999999987 6776665433210
Q ss_pred --CCc-ceEeeecCCCCCCCC---CCccEEEEcccccCC-cChHHHHHHHHHHHHhcCCCCceEeecccccCCCCCCCCC
Q 026036 128 --PAL-PHIKHSWGDAFPIPN---PDWDLILASDILLYV-KQYSNLIKSLSVLLKSYKPKDSQVGHLTKNEQGEGTEGLP 200 (244)
Q Consensus 128 --~~~-~~~~~~~~~~~~~~~---~~fD~I~~~~~l~~~-~~~~~l~~~l~~~~~~lk~gG~~~~~~~~~~~~~~~~~~~ 200 (244)
.++ ..+..+..+..+... ++||+|+++.++++. ...++...+++++.++|||||++++.......
T Consensus 132 l~~~v~~~~~~d~~~~~~~~~~~~~~fD~v~~~~~l~~~~~~~~~~~~~l~~~~~~LkpgG~li~~~~~~~~-------- 203 (265)
T 2i62_A 132 LRRAIKQVLKCDVTQSQPLGGVSLPPADCLLSTLCLDAACPDLPAYRTALRNLGSLLKPGGFLVMVDALKSS-------- 203 (265)
T ss_dssp HHHHEEEEEECCTTSSSTTTTCCCCCEEEEEEESCHHHHCSSHHHHHHHHHHHHTTEEEEEEEEEEEESSCC--------
T ss_pred hhhhheeEEEeeeccCCCCCccccCCccEEEEhhhhhhhcCChHHHHHHHHHHHhhCCCCcEEEEEecCCCc--------
Confidence 002 334444433333233 789999999998311 13456779999999999999999887422110
Q ss_pred CCeEEEee-eeccCccchhhHHHHHhhcCCeEEEec
Q 026036 201 WPAFLMSW-RRRIGKEDETIFFTSCENAGLEVKHLG 235 (244)
Q Consensus 201 ~~~~~~~~-~~~~~~~~~~~~~~~l~~~Gf~v~~~~ 235 (244)
.+.... .......+.+.+.++++++||+++.+.
T Consensus 204 --~~~~~~~~~~~~~~~~~~~~~~l~~aGf~~~~~~ 237 (265)
T 2i62_A 204 --YYMIGEQKFSSLPLGWETVRDAVEEAGYTIEQFE 237 (265)
T ss_dssp --EEEETTEEEECCCCCHHHHHHHHHHTTCEEEEEE
T ss_pred --eEEcCCccccccccCHHHHHHHHHHCCCEEEEEE
Confidence 111100 001111234688999999999988775
|
| >3p9n_A Possible methyltransferase (methylase); RV2966C, adoMet binding, RNA methylase, RSMD, SAM-fold, RNA methyltransferase; 1.90A {Mycobacterium tuberculosis} | Back alignment and structure |
|---|
Probab=99.69 E-value=9.4e-17 Score=124.31 Aligned_cols=127 Identities=17% Similarity=0.094 Sum_probs=90.1
Q ss_pred eechHHHHHHHHhhccCc---ccCCeEEEeCCCCcHHHHHHHHhCCCeEEEEeCChHHHHHHHHHhHHhcCCCCCcceEe
Q 026036 58 LWPGTFSFAEWLMHHREW---IERRRCIELGSGTGALAIFLRKAMNLDITTSDYNDQEIEDNIAYNSTTNGITPALPHIK 134 (244)
Q Consensus 58 ~w~~~~~l~~~~~~~~~~---~~~~~VLdlG~G~G~~~~~~a~~~~~~v~~~D~~~~~l~~~~~~~~~~~~~~~~~~~~~ 134 (244)
.+|....+.+.+...... .++.+|||+|||+|.+++.++..+..+|+++|+++.++ +.+++|...+++ .++..+.
T Consensus 22 ~rp~~~~~~~~l~~~l~~~~~~~~~~vLDlgcG~G~~~~~~~~~~~~~v~~vD~~~~~~-~~a~~~~~~~~~-~~v~~~~ 99 (189)
T 3p9n_A 22 TRPTTDRVRESLFNIVTARRDLTGLAVLDLYAGSGALGLEALSRGAASVLFVESDQRSA-AVIARNIEALGL-SGATLRR 99 (189)
T ss_dssp C---CHHHHHHHHHHHHHHSCCTTCEEEEETCTTCHHHHHHHHTTCSEEEEEECCHHHH-HHHHHHHHHHTC-SCEEEEE
T ss_pred CccCcHHHHHHHHHHHHhccCCCCCEEEEeCCCcCHHHHHHHHCCCCeEEEEECCHHHH-HHHHHHHHHcCC-CceEEEE
Confidence 345555555555443322 47889999999999999988777667899999999997 888899888776 3444444
Q ss_pred eecCCCCC-CCCCCccEEEEcccccCCcChHHHHHHHHHHHH--hcCCCCceEeecc
Q 026036 135 HSWGDAFP-IPNPDWDLILASDILLYVKQYSNLIKSLSVLLK--SYKPKDSQVGHLT 188 (244)
Q Consensus 135 ~~~~~~~~-~~~~~fD~I~~~~~l~~~~~~~~l~~~l~~~~~--~lk~gG~~~~~~~ 188 (244)
.+..+... ...++||+|+++.++ ++. .+...+.++.+.+ +|+|||.+++...
T Consensus 100 ~d~~~~~~~~~~~~fD~i~~~~p~-~~~-~~~~~~~l~~~~~~~~L~pgG~l~~~~~ 154 (189)
T 3p9n_A 100 GAVAAVVAAGTTSPVDLVLADPPY-NVD-SADVDAILAALGTNGWTREGTVAVVERA 154 (189)
T ss_dssp SCHHHHHHHCCSSCCSEEEECCCT-TSC-HHHHHHHHHHHHHSSSCCTTCEEEEEEE
T ss_pred ccHHHHHhhccCCCccEEEECCCC-Ccc-hhhHHHHHHHHHhcCccCCCeEEEEEec
Confidence 43322211 235789999998775 432 3566789999999 9999999888743
|
| >4fsd_A Arsenic methyltransferase; rossmann fold; 1.75A {Cyanidioschyzon SP} PDB: 4fr0_A* 4fs8_A 3p7e_A 3qnh_A 3qhu_A | Back alignment and structure |
|---|
Probab=99.69 E-value=6.6e-17 Score=138.66 Aligned_cols=156 Identities=13% Similarity=0.097 Sum_probs=102.2
Q ss_pred cccCCeEEEeCCCCcHHHHHHHHhC--CCeEEEEeCChHHHHHHHHHhHHhc-----C-C-CCCcceEeeecCCC--C--
Q 026036 75 WIERRRCIELGSGTGALAIFLRKAM--NLDITTSDYNDQEIEDNIAYNSTTN-----G-I-TPALPHIKHSWGDA--F-- 141 (244)
Q Consensus 75 ~~~~~~VLdlG~G~G~~~~~~a~~~--~~~v~~~D~~~~~l~~~~~~~~~~~-----~-~-~~~~~~~~~~~~~~--~-- 141 (244)
..++.+|||||||+|..+..+++.. +.+|+++|+++.++ +.+++++..+ + . ..++..+..+..+. .
T Consensus 81 ~~~~~~VLDlGcG~G~~~~~la~~~~~~~~v~gvD~s~~~l-~~a~~~~~~~~~~~~g~~~~~~v~~~~~d~~~l~~~~~ 159 (383)
T 4fsd_A 81 SLEGATVLDLGCGTGRDVYLASKLVGEHGKVIGVDMLDNQL-EVARKYVEYHAEKFFGSPSRSNVRFLKGFIENLATAEP 159 (383)
T ss_dssp GGTTCEEEEESCTTSHHHHHHHHHHTTTCEEEEEECCHHHH-HHHHHTHHHHHHHHHSSTTCCCEEEEESCTTCGGGCBS
T ss_pred CCCCCEEEEecCccCHHHHHHHHHhCCCCEEEEEECCHHHH-HHHHHHHHHhhhhcccccCCCceEEEEccHHHhhhccc
Confidence 4578899999999999999998874 56999999999987 7777776543 2 1 12344444444332 1
Q ss_pred -CCCCCCccEEEEcccccCCcChHHHHHHHHHHHHhcCCCCceEeecccccCCCCCCCCCCCeEEEeeeeccCccchhhH
Q 026036 142 -PIPNPDWDLILASDILLYVKQYSNLIKSLSVLLKSYKPKDSQVGHLTKNEQGEGTEGLPWPAFLMSWRRRIGKEDETIF 220 (244)
Q Consensus 142 -~~~~~~fD~I~~~~~l~~~~~~~~l~~~l~~~~~~lk~gG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 220 (244)
++.+++||+|+++.++++. ++..++++++.++|||||++++................+.+........ .+.+++
T Consensus 160 ~~~~~~~fD~V~~~~~l~~~---~d~~~~l~~~~r~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~ 234 (383)
T 4fsd_A 160 EGVPDSSVDIVISNCVCNLS---TNKLALFKEIHRVLRDGGELYFSDVYADRRLSEAAQQDPILYGECLGGA--LYLEDF 234 (383)
T ss_dssp CCCCTTCEEEEEEESCGGGC---SCHHHHHHHHHHHEEEEEEEEEEEEEESSCCCHHHHHCHHHHHTTCTTC--CBHHHH
T ss_pred CCCCCCCEEEEEEccchhcC---CCHHHHHHHHHHHcCCCCEEEEEEeccccccCHhHhhhHHHhhcccccC--CCHHHH
Confidence 5566799999999999443 3455999999999999999988744332211000000000000000011 124789
Q ss_pred HHHHhhcCCeEEEecc
Q 026036 221 FTSCENAGLEVKHLGS 236 (244)
Q Consensus 221 ~~~l~~~Gf~v~~~~~ 236 (244)
.++++++||+++++.+
T Consensus 235 ~~ll~~aGF~~v~~~~ 250 (383)
T 4fsd_A 235 RRLVAEAGFRDVRLVS 250 (383)
T ss_dssp HHHHHHTTCCCEEEEE
T ss_pred HHHHHHCCCceEEEEe
Confidence 9999999998765543
|
| >2b3t_A Protein methyltransferase HEMK; translation termination, methylation, conformational changes; HET: SAH; 3.10A {Escherichia coli} SCOP: c.66.1.30 PDB: 1t43_A* | Back alignment and structure |
|---|
Probab=99.68 E-value=1.3e-17 Score=136.78 Aligned_cols=147 Identities=14% Similarity=0.182 Sum_probs=106.6
Q ss_pred eeechHHHHHHHHhhccCcccCCeEEEeCCCCcHHHHHHHHhC-CCeEEEEeCChHHHHHHHHHhHHhcCCCCCcceEee
Q 026036 57 FLWPGTFSFAEWLMHHREWIERRRCIELGSGTGALAIFLRKAM-NLDITTSDYNDQEIEDNIAYNSTTNGITPALPHIKH 135 (244)
Q Consensus 57 ~~w~~~~~l~~~~~~~~~~~~~~~VLdlG~G~G~~~~~~a~~~-~~~v~~~D~~~~~l~~~~~~~~~~~~~~~~~~~~~~ 135 (244)
...|.+..+.+.+..... .++.+|||+|||+|.+++.++... ..+|+++|+|+.++ +.+++|...++++ ++..+..
T Consensus 90 ipr~~te~l~~~~l~~~~-~~~~~vLDlG~GsG~~~~~la~~~~~~~v~~vD~s~~~l-~~a~~n~~~~~~~-~v~~~~~ 166 (276)
T 2b3t_A 90 IPRPDTECLVEQALARLP-EQPCRILDLGTGTGAIALALASERPDCEIIAVDRMPDAV-SLAQRNAQHLAIK-NIHILQS 166 (276)
T ss_dssp CCCTTHHHHHHHHHHHSC-SSCCEEEEETCTTSHHHHHHHHHCTTSEEEEECSSHHHH-HHHHHHHHHHTCC-SEEEECC
T ss_pred ccCchHHHHHHHHHHhcc-cCCCEEEEecCCccHHHHHHHHhCCCCEEEEEECCHHHH-HHHHHHHHHcCCC-ceEEEEc
Confidence 456778888888877654 467799999999999999998765 67999999999987 8888898877763 3444444
Q ss_pred ecCCCCCCCCCCccEEEEcccccCC------------cC----------hHHHHHHHHHHHHhcCCCCceEeecccccCC
Q 026036 136 SWGDAFPIPNPDWDLILASDILLYV------------KQ----------YSNLIKSLSVLLKSYKPKDSQVGHLTKNEQG 193 (244)
Q Consensus 136 ~~~~~~~~~~~~fD~I~~~~~l~~~------------~~----------~~~l~~~l~~~~~~lk~gG~~~~~~~~~~~~ 193 (244)
++.+. ...++||+|+++.++... .. .....+.++.+.+.|+|||.+++.+.
T Consensus 167 d~~~~--~~~~~fD~Iv~npPy~~~~~~~l~~~v~~~~p~~al~~~~~g~~~~~~~l~~~~~~LkpgG~l~~~~~----- 239 (276)
T 2b3t_A 167 DWFSA--LAGQQFAMIVSNPPYIDEQDPHLQQGDVRFEPLTALVAADSGMADIVHIIEQSRNALVSGGFLLLEHG----- 239 (276)
T ss_dssp STTGG--GTTCCEEEEEECCCCBCTTCHHHHSSGGGSSCSTTTBCHHHHTHHHHHHHHHHGGGEEEEEEEEEECC-----
T ss_pred chhhh--cccCCccEEEECCCCCCccccccChhhhhcCcHHHHcCCCcHHHHHHHHHHHHHHhcCCCCEEEEEEC-----
Confidence 44332 225689999998664211 00 13456888999999999998877510
Q ss_pred CCCCCCCCCeEEEeeeeccCccchhhHHHHHhhcCCeEEE
Q 026036 194 EGTEGLPWPAFLMSWRRRIGKEDETIFFTSCENAGLEVKH 233 (244)
Q Consensus 194 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gf~v~~ 233 (244)
. .....+.++++++||+...
T Consensus 240 ------------------~--~~~~~~~~~l~~~Gf~~v~ 259 (276)
T 2b3t_A 240 ------------------W--QQGEAVRQAFILAGYHDVE 259 (276)
T ss_dssp ------------------S--SCHHHHHHHHHHTTCTTCC
T ss_pred ------------------c--hHHHHHHHHHHHCCCcEEE
Confidence 0 1246788889999997543
|
| >3thr_A Glycine N-methyltransferase; GNMT, folate, methyltransferase binding, liver cytosol, transferase-transferase inhibitor C; HET: C2F TAM; 2.00A {Rattus norvegicus} SCOP: c.66.1.5 PDB: 3ths_A* 1xva_A* 1d2c_A 1kia_A* 1nbh_A* 1bhj_A* 2idj_A 2idk_A* 1d2g_A 1d2h_A* 1nbi_A* 1r8x_A 1r8y_A 1r74_A* 2azt_A* | Back alignment and structure |
|---|
Probab=99.68 E-value=5.2e-16 Score=128.09 Aligned_cols=124 Identities=15% Similarity=0.183 Sum_probs=86.0
Q ss_pred HHHHHHHhhccCcccCCeEEEeCCCCcHHHHHHHHhCCCeEEEEeCChHHHHHHHHHhHHhcCCCCCcceEeeecCCC--
Q 026036 63 FSFAEWLMHHREWIERRRCIELGSGTGALAIFLRKAMNLDITTSDYNDQEIEDNIAYNSTTNGITPALPHIKHSWGDA-- 140 (244)
Q Consensus 63 ~~l~~~~~~~~~~~~~~~VLdlG~G~G~~~~~~a~~~~~~v~~~D~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~-- 140 (244)
..+.+++.......++.+|||||||+|..+..++.. +.+|+++|+|+.++ +.++++............+.+..++.
T Consensus 43 ~~~~~~l~~~l~~~~~~~vLDiGcG~G~~~~~l~~~-~~~v~gvD~s~~~l-~~a~~~~~~~~~~~~~~~~~~~~~d~~~ 120 (293)
T 3thr_A 43 AEYKAWLLGLLRQHGCHRVLDVACGTGVDSIMLVEE-GFSVTSVDASDKML-KYALKERWNRRKEPAFDKWVIEEANWLT 120 (293)
T ss_dssp HHHHHHHHHHHHHTTCCEEEETTCTTSHHHHHHHHT-TCEEEEEESCHHHH-HHHHHHHHHTTTSHHHHTCEEEECCGGG
T ss_pred HHHHHHHHHHhcccCCCEEEEecCCCCHHHHHHHHC-CCeEEEEECCHHHH-HHHHHhhhhcccccccceeeEeecChhh
Confidence 334455555444457789999999999999999887 66999999999997 77776654332211111112222221
Q ss_pred CC---CCCCCccEEEEc-ccccCCcC----hHHHHHHHHHHHHhcCCCCceEeecc
Q 026036 141 FP---IPNPDWDLILAS-DILLYVKQ----YSNLIKSLSVLLKSYKPKDSQVGHLT 188 (244)
Q Consensus 141 ~~---~~~~~fD~I~~~-~~l~~~~~----~~~l~~~l~~~~~~lk~gG~~~~~~~ 188 (244)
++ +.+++||+|++. +++.+... .....+++++++++|||||++++.++
T Consensus 121 ~~~~~~~~~~fD~V~~~g~~l~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~ 176 (293)
T 3thr_A 121 LDKDVPAGDGFDAVICLGNSFAHLPDSKGDQSEHRLALKNIASMVRPGGLLVIDHR 176 (293)
T ss_dssp HHHHSCCTTCEEEEEECTTCGGGSCCSSSSSHHHHHHHHHHHHTEEEEEEEEEEEE
T ss_pred CccccccCCCeEEEEEcChHHhhcCccccCHHHHHHHHHHHHHHcCCCeEEEEEeC
Confidence 12 456789999998 78844433 25577999999999999999998844
|
| >2gb4_A Thiopurine S-methyltransferase; 18204406, thiopurine methyltransferase, structural genomics, PSI, protein structure initiative; HET: SAH; 1.25A {Mus musculus} PDB: 3bgi_A* 3bgd_A* 2bzg_A* 2h11_A* | Back alignment and structure |
|---|
Probab=99.68 E-value=5.1e-16 Score=125.66 Aligned_cols=154 Identities=9% Similarity=0.006 Sum_probs=98.3
Q ss_pred HHHHHHhhccCcccCCeEEEeCCCCcHHHHHHHHhCCCeEEEEeCChHHHHHHHHHhHHh----------cC------CC
Q 026036 64 SFAEWLMHHREWIERRRCIELGSGTGALAIFLRKAMNLDITTSDYNDQEIEDNIAYNSTT----------NG------IT 127 (244)
Q Consensus 64 ~l~~~~~~~~~~~~~~~VLdlG~G~G~~~~~~a~~~~~~v~~~D~~~~~l~~~~~~~~~~----------~~------~~ 127 (244)
.+.+++.......++.+|||+|||+|..+..+++. +.+|+|+|+|+.|+ +.++++... ++ ..
T Consensus 55 ~l~~~~~~~~~~~~~~~vLD~GCG~G~~~~~La~~-G~~V~gvD~S~~~i-~~a~~~~~~~~~~~~~~~~~~~~~~~~~~ 132 (252)
T 2gb4_A 55 LLKKHLDTFLKGQSGLRVFFPLCGKAIEMKWFADR-GHTVVGVEISEIGI-REFFAEQNLSYTEEPLAEIAGAKVFKSSS 132 (252)
T ss_dssp HHHHHHHHHHTTCCSCEEEETTCTTCTHHHHHHHT-TCEEEEECSCHHHH-HHHHHHTTCCEEEEECTTSTTCEEEEETT
T ss_pred HHHHHHHHhccCCCCCeEEEeCCCCcHHHHHHHHC-CCeEEEEECCHHHH-HHHHHhcccccccccccccccccccccCC
Confidence 45555543322346789999999999999999887 67999999999998 555543321 00 01
Q ss_pred CCcceEeeecCCCCCCC-CCCccEEEEcccccCCcChHHHHHHHHHHHHhcCCCCceEeecccccCCCCCCCCCCCeEEE
Q 026036 128 PALPHIKHSWGDAFPIP-NPDWDLILASDILLYVKQYSNLIKSLSVLLKSYKPKDSQVGHLTKNEQGEGTEGLPWPAFLM 206 (244)
Q Consensus 128 ~~~~~~~~~~~~~~~~~-~~~fD~I~~~~~l~~~~~~~~l~~~l~~~~~~lk~gG~~~~~~~~~~~~~~~~~~~~~~~~~ 206 (244)
.++..+..+..+ ++.. .++||+|++..++ ++...+...+.++++.++|||||++++++....... . . .+
T Consensus 133 ~~i~~~~~D~~~-l~~~~~~~FD~V~~~~~l-~~l~~~~~~~~l~~~~~~LkpGG~l~l~~~~~~~~~--~-~-g~---- 202 (252)
T 2gb4_A 133 GSISLYCCSIFD-LPRANIGKFDRIWDRGAL-VAINPGDHDRYADIILSLLRKEFQYLVAVLSYDPTK--H-A-GP---- 202 (252)
T ss_dssp SSEEEEESCTTT-GGGGCCCCEEEEEESSST-TTSCGGGHHHHHHHHHHTEEEEEEEEEEEEECCTTS--C-C-CS----
T ss_pred CceEEEECcccc-CCcccCCCEEEEEEhhhh-hhCCHHHHHHHHHHHHHHcCCCeEEEEEEEecCCcc--C-C-CC----
Confidence 122333333222 2222 2689999998887 444555667899999999999999976543322111 0 0 11
Q ss_pred eeeeccCccchhhHHHHHhhcCCeEEEec
Q 026036 207 SWRRRIGKEDETIFFTSCENAGLEVKHLG 235 (244)
Q Consensus 207 ~~~~~~~~~~~~~~~~~l~~~Gf~v~~~~ 235 (244)
.+. -+.+++.++++. +|+++.+.
T Consensus 203 ----~~~-~~~~el~~~l~~-~f~v~~~~ 225 (252)
T 2gb4_A 203 ----PFY-VPSAELKRLFGT-KCSMQCLE 225 (252)
T ss_dssp ----SCC-CCHHHHHHHHTT-TEEEEEEE
T ss_pred ----CCC-CCHHHHHHHhhC-CeEEEEEe
Confidence 111 124778888877 59988765
|
| >3bkw_A MLL3908 protein, S-adenosylmethionine dependent methyltransferase; NP_104914.1; HET: MSE; 1.60A {Mesorhizobium loti} | Back alignment and structure |
|---|
Probab=99.68 E-value=3.4e-16 Score=125.47 Aligned_cols=107 Identities=14% Similarity=0.214 Sum_probs=79.9
Q ss_pred CcccCCeEEEeCCCCcHHHHHHHHhCCCeEEEEeCChHHHHHHHHHhHHhcCCCCCcceEeeecCCCCCCCCCCccEEEE
Q 026036 74 EWIERRRCIELGSGTGALAIFLRKAMNLDITTSDYNDQEIEDNIAYNSTTNGITPALPHIKHSWGDAFPIPNPDWDLILA 153 (244)
Q Consensus 74 ~~~~~~~VLdlG~G~G~~~~~~a~~~~~~v~~~D~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fD~I~~ 153 (244)
...++.+|||||||+|..+..++..+..+|+++|+++.++ +.++++...+ ++..+..+..+ ++..+++||+|++
T Consensus 40 ~~~~~~~vLdiG~G~G~~~~~l~~~~~~~v~~vD~s~~~~-~~a~~~~~~~----~~~~~~~d~~~-~~~~~~~fD~v~~ 113 (243)
T 3bkw_A 40 PEVGGLRIVDLGCGFGWFCRWAHEHGASYVLGLDLSEKML-ARARAAGPDT----GITYERADLDK-LHLPQDSFDLAYS 113 (243)
T ss_dssp CCCTTCEEEEETCTTCHHHHHHHHTTCSEEEEEESCHHHH-HHHHHTSCSS----SEEEEECCGGG-CCCCTTCEEEEEE
T ss_pred cccCCCEEEEEcCcCCHHHHHHHHCCCCeEEEEcCCHHHH-HHHHHhcccC----CceEEEcChhh-ccCCCCCceEEEE
Confidence 3457789999999999999999887444999999999987 6776654332 23333333322 3445678999999
Q ss_pred cccccCCcChHHHHHHHHHHHHhcCCCCceEeeccc
Q 026036 154 SDILLYVKQYSNLIKSLSVLLKSYKPKDSQVGHLTK 189 (244)
Q Consensus 154 ~~~l~~~~~~~~l~~~l~~~~~~lk~gG~~~~~~~~ 189 (244)
+.++++. ++....++++.++|+|||++++.+..
T Consensus 114 ~~~l~~~---~~~~~~l~~~~~~L~pgG~l~~~~~~ 146 (243)
T 3bkw_A 114 SLALHYV---EDVARLFRTVHQALSPGGHFVFSTEH 146 (243)
T ss_dssp ESCGGGC---SCHHHHHHHHHHHEEEEEEEEEEEEC
T ss_pred ecccccc---chHHHHHHHHHHhcCcCcEEEEEeCC
Confidence 9998443 34559999999999999999987543
|
| >2xvm_A Tellurite resistance protein TEHB; antibiotic resistance, transferase; HET: SAH; 1.48A {Escherichia coli} PDB: 2xva_A* 4dq0_A* 2i6g_A* | Back alignment and structure |
|---|
Probab=99.67 E-value=9.7e-16 Score=119.06 Aligned_cols=143 Identities=14% Similarity=0.200 Sum_probs=99.1
Q ss_pred cccCCeEEEeCCCCcHHHHHHHHhCCCeEEEEeCChHHHHHHHHHhHHhcCCCCCcceEeeecCCCCCCCCCCccEEEEc
Q 026036 75 WIERRRCIELGSGTGALAIFLRKAMNLDITTSDYNDQEIEDNIAYNSTTNGITPALPHIKHSWGDAFPIPNPDWDLILAS 154 (244)
Q Consensus 75 ~~~~~~VLdlG~G~G~~~~~~a~~~~~~v~~~D~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fD~I~~~ 154 (244)
..++.+|||+|||+|..+..++.. +.+|+++|+++.++ +.++++...++.+ .+..+..+..+ .+. +++||+|+++
T Consensus 30 ~~~~~~vLdiG~G~G~~~~~l~~~-~~~v~~vD~s~~~~-~~a~~~~~~~~~~-~~~~~~~d~~~-~~~-~~~~D~v~~~ 104 (199)
T 2xvm_A 30 VVKPGKTLDLGCGNGRNSLYLAAN-GYDVDAWDKNAMSI-ANVERIKSIENLD-NLHTRVVDLNN-LTF-DRQYDFILST 104 (199)
T ss_dssp TSCSCEEEEETCTTSHHHHHHHHT-TCEEEEEESCHHHH-HHHHHHHHHHTCT-TEEEEECCGGG-CCC-CCCEEEEEEE
T ss_pred ccCCCeEEEEcCCCCHHHHHHHHC-CCeEEEEECCHHHH-HHHHHHHHhCCCC-CcEEEEcchhh-CCC-CCCceEEEEc
Confidence 346779999999999999999887 77999999999987 7787777665552 23444444332 233 6789999999
Q ss_pred ccccCCcChHHHHHHHHHHHHhcCCCCceEeecccccCCCCCCCCCCCeEEEeeeeccCccchhhHHHHHhhcCCeEEEe
Q 026036 155 DILLYVKQYSNLIKSLSVLLKSYKPKDSQVGHLTKNEQGEGTEGLPWPAFLMSWRRRIGKEDETIFFTSCENAGLEVKHL 234 (244)
Q Consensus 155 ~~l~~~~~~~~l~~~l~~~~~~lk~gG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gf~v~~~ 234 (244)
.++ ++...++..+.++++.+.|||||++++........... .+ .+...+ +..++.++++. |++++.
T Consensus 105 ~~l-~~~~~~~~~~~l~~~~~~L~~gG~l~~~~~~~~~~~~~----~~----~~~~~~---~~~~l~~~~~~--f~~~~~ 170 (199)
T 2xvm_A 105 VVL-MFLEAKTIPGLIANMQRCTKPGGYNLIVAAMDTADYPC----TV----GFPFAF---KEGELRRYYEG--WERVKY 170 (199)
T ss_dssp SCG-GGSCGGGHHHHHHHHHHTEEEEEEEEEEEEBCCSSSCC----CS----CCSCCB---CTTHHHHHTTT--SEEEEE
T ss_pred chh-hhCCHHHHHHHHHHHHHhcCCCeEEEEEEeeccCCcCC----CC----CCCCcc---CHHHHHHHhcC--CeEEEe
Confidence 998 44444567799999999999999987764333221100 00 011112 23677788876 988877
Q ss_pred cc
Q 026036 235 GS 236 (244)
Q Consensus 235 ~~ 236 (244)
.+
T Consensus 171 ~~ 172 (199)
T 2xvm_A 171 NE 172 (199)
T ss_dssp EC
T ss_pred cc
Confidence 54
|
| >3i53_A O-methyltransferase; CO-complex, rossmann-like fold; HET: SAH; 2.08A {Streptomyces carzinostaticus subsp} PDB: 3i58_A* 3i5u_A* 3i64_A* | Back alignment and structure |
|---|
Probab=99.67 E-value=3.9e-16 Score=131.33 Aligned_cols=153 Identities=14% Similarity=0.079 Sum_probs=104.5
Q ss_pred CcccCCeEEEeCCCCcHHHHHHHHhC-CCeEEEEeCChHHHHHHHHHhHHhcCCCCCcceEeeecCCCCCCCCCCccEEE
Q 026036 74 EWIERRRCIELGSGTGALAIFLRKAM-NLDITTSDYNDQEIEDNIAYNSTTNGITPALPHIKHSWGDAFPIPNPDWDLIL 152 (244)
Q Consensus 74 ~~~~~~~VLdlG~G~G~~~~~~a~~~-~~~v~~~D~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fD~I~ 152 (244)
...++.+|||+|||+|..+..+++.. ..+++++|+ +.++ +.++++....++..++..+..+..++. +. +||+|+
T Consensus 166 ~~~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~-~~a~~~~~~~~~~~~v~~~~~d~~~~~--p~-~~D~v~ 240 (332)
T 3i53_A 166 DWAALGHVVDVGGGSGGLLSALLTAHEDLSGTVLDL-QGPA-SAAHRRFLDTGLSGRAQVVVGSFFDPL--PA-GAGGYV 240 (332)
T ss_dssp CCGGGSEEEEETCTTSHHHHHHHHHCTTCEEEEEEC-HHHH-HHHHHHHHHTTCTTTEEEEECCTTSCC--CC-SCSEEE
T ss_pred CCCCCCEEEEeCCChhHHHHHHHHHCCCCeEEEecC-HHHH-HHHHHhhhhcCcCcCeEEecCCCCCCC--CC-CCcEEE
Confidence 33456899999999999999998876 678999999 8877 778877777666555666555544322 22 799999
Q ss_pred EcccccCCcChHHHHHHHHHHHHhcCCCCceEeecccccCCCCCCCCCCCeEEEeeeeccCccchhhHHHHHhhcCCeEE
Q 026036 153 ASDILLYVKQYSNLIKSLSVLLKSYKPKDSQVGHLTKNEQGEGTEGLPWPAFLMSWRRRIGKEDETIFFTSCENAGLEVK 232 (244)
Q Consensus 153 ~~~~l~~~~~~~~l~~~l~~~~~~lk~gG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gf~v~ 232 (244)
+.+++++ ...+...+.++++++.|+|||++++........ ......+...+.....+. .+.+++.++++++||+++
T Consensus 241 ~~~vlh~-~~~~~~~~~l~~~~~~L~pgG~l~i~e~~~~~~-~~~~~~d~~~~~~~~~~~--~t~~e~~~ll~~aGf~~~ 316 (332)
T 3i53_A 241 LSAVLHD-WDDLSAVAILRRCAEAAGSGGVVLVIEAVAGDE-HAGTGMDLRMLTYFGGKE--RSLAELGELAAQAGLAVR 316 (332)
T ss_dssp EESCGGG-SCHHHHHHHHHHHHHHHTTTCEEEEEECCCC----CCHHHHHHHHHHHSCCC--CCHHHHHHHHHHTTEEEE
T ss_pred Eehhhcc-CCHHHHHHHHHHHHHhcCCCCEEEEEeecCCCC-CccHHHHHHHHhhCCCCC--CCHHHHHHHHHHCCCEEE
Confidence 9999944 444557799999999999999999874433322 000000000000011111 235789999999999988
Q ss_pred Eec
Q 026036 233 HLG 235 (244)
Q Consensus 233 ~~~ 235 (244)
++.
T Consensus 317 ~~~ 319 (332)
T 3i53_A 317 AAH 319 (332)
T ss_dssp EEE
T ss_pred EEE
Confidence 764
|
| >3ofk_A Nodulation protein S; NODS, N-methyltransferase, SAH, SAM, NOD factor, fixation, symbiosis, alpha/beta structure; HET: SAH; 1.85A {Bradyrhizobium SP} PDB: 3ofj_A* | Back alignment and structure |
|---|
Probab=99.67 E-value=2.1e-16 Score=124.67 Aligned_cols=121 Identities=14% Similarity=0.140 Sum_probs=90.9
Q ss_pred hHHHHHHHHhhccCcccCCeEEEeCCCCcHHHHHHHHhCCCeEEEEeCChHHHHHHHHHhHHhcCCCCCcceEeeecCCC
Q 026036 61 GTFSFAEWLMHHREWIERRRCIELGSGTGALAIFLRKAMNLDITTSDYNDQEIEDNIAYNSTTNGITPALPHIKHSWGDA 140 (244)
Q Consensus 61 ~~~~l~~~~~~~~~~~~~~~VLdlG~G~G~~~~~~a~~~~~~v~~~D~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 140 (244)
....+.+++.......++.+|||+|||+|.++..+++. +.+|+++|+++.++ +.++++..... ++..+..+..+.
T Consensus 35 ~~~~~~~~l~~~~~~~~~~~vLDiGcG~G~~~~~l~~~-~~~v~~vD~s~~~~-~~a~~~~~~~~---~~~~~~~d~~~~ 109 (216)
T 3ofk_A 35 ERERHTQLLRLSLSSGAVSNGLEIGCAAGAFTEKLAPH-CKRLTVIDVMPRAI-GRACQRTKRWS---HISWAATDILQF 109 (216)
T ss_dssp HHHHHHHHHHHHTTTSSEEEEEEECCTTSHHHHHHGGG-EEEEEEEESCHHHH-HHHHHHTTTCS---SEEEEECCTTTC
T ss_pred HHHHHHHHHHHHcccCCCCcEEEEcCCCCHHHHHHHHc-CCEEEEEECCHHHH-HHHHHhcccCC---CeEEEEcchhhC
Confidence 34455666665555567789999999999999999877 56999999999987 77777655422 334444444332
Q ss_pred CCCCCCCccEEEEcccccCCcChHHHHHHHHHHHHhcCCCCceEeecc
Q 026036 141 FPIPNPDWDLILASDILLYVKQYSNLIKSLSVLLKSYKPKDSQVGHLT 188 (244)
Q Consensus 141 ~~~~~~~fD~I~~~~~l~~~~~~~~l~~~l~~~~~~lk~gG~~~~~~~ 188 (244)
+ .+++||+|+++.++++......+.+.++++.++|||||.+++.++
T Consensus 110 -~-~~~~fD~v~~~~~l~~~~~~~~~~~~l~~~~~~L~pgG~l~~~~~ 155 (216)
T 3ofk_A 110 -S-TAELFDLIVVAEVLYYLEDMTQMRTAIDNMVKMLAPGGHLVFGSA 155 (216)
T ss_dssp -C-CSCCEEEEEEESCGGGSSSHHHHHHHHHHHHHTEEEEEEEEEEEE
T ss_pred -C-CCCCccEEEEccHHHhCCCHHHHHHHHHHHHHHcCCCCEEEEEec
Confidence 2 457899999999996655566677899999999999999988643
|
| >3i9f_A Putative type 11 methyltransferase; structural genomics, PSI-2, protein structure initiative; 2.50A {Sulfolobus solfataricus} | Back alignment and structure |
|---|
Probab=99.67 E-value=2.2e-16 Score=120.01 Aligned_cols=132 Identities=14% Similarity=0.117 Sum_probs=93.9
Q ss_pred cccCCeEEEeCCCCcHHHHHHHHhCCCeEEEEeCChHHHHHHHHHhHHhcCCCCCcceEeeecCCCCCCCCCCccEEEEc
Q 026036 75 WIERRRCIELGSGTGALAIFLRKAMNLDITTSDYNDQEIEDNIAYNSTTNGITPALPHIKHSWGDAFPIPNPDWDLILAS 154 (244)
Q Consensus 75 ~~~~~~VLdlG~G~G~~~~~~a~~~~~~v~~~D~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fD~I~~~ 154 (244)
..++.+|||+|||+|.++..+++.+. +|+++|+++.++ +.++++ . .++..+ .++ .+..+++||+|+++
T Consensus 15 ~~~~~~vLDiG~G~G~~~~~l~~~~~-~v~~vD~s~~~~-~~a~~~--~----~~v~~~---~~d-~~~~~~~~D~v~~~ 82 (170)
T 3i9f_A 15 EGKKGVIVDYGCGNGFYCKYLLEFAT-KLYCIDINVIAL-KEVKEK--F----DSVITL---SDP-KEIPDNSVDFILFA 82 (170)
T ss_dssp SSCCEEEEEETCTTCTTHHHHHTTEE-EEEEECSCHHHH-HHHHHH--C----TTSEEE---SSG-GGSCTTCEEEEEEE
T ss_pred cCCCCeEEEECCCCCHHHHHHHhhcC-eEEEEeCCHHHH-HHHHHh--C----CCcEEE---eCC-CCCCCCceEEEEEc
Confidence 44678999999999999999988754 999999999987 666655 1 122333 333 55667799999999
Q ss_pred ccccCCcChHHHHHHHHHHHHhcCCCCceEeecccccCCCCCCCCCCCeEEEeeeeccCccchhhHHHHHhhcCCeEEEe
Q 026036 155 DILLYVKQYSNLIKSLSVLLKSYKPKDSQVGHLTKNEQGEGTEGLPWPAFLMSWRRRIGKEDETIFFTSCENAGLEVKHL 234 (244)
Q Consensus 155 ~~l~~~~~~~~l~~~l~~~~~~lk~gG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gf~v~~~ 234 (244)
.++++.. +....++++.+.|||||++++........... .+ +..++ +.+++.++++ ||+++++
T Consensus 83 ~~l~~~~---~~~~~l~~~~~~L~pgG~l~~~~~~~~~~~~~----~~-----~~~~~---~~~~~~~~l~--Gf~~~~~ 145 (170)
T 3i9f_A 83 NSFHDMD---DKQHVISEVKRILKDDGRVIIIDWRKENTGIG----PP-----LSIRM---DEKDYMGWFS--NFVVEKR 145 (170)
T ss_dssp SCSTTCS---CHHHHHHHHHHHEEEEEEEEEEEECSSCCSSS----SC-----GGGCC---CHHHHHHHTT--TEEEEEE
T ss_pred cchhccc---CHHHHHHHHHHhcCCCCEEEEEEcCccccccC----ch-----Hhhhc---CHHHHHHHHh--CcEEEEc
Confidence 9995443 44599999999999999998874443221110 00 11122 2478888888 9998876
Q ss_pred c
Q 026036 235 G 235 (244)
Q Consensus 235 ~ 235 (244)
.
T Consensus 146 ~ 146 (170)
T 3i9f_A 146 F 146 (170)
T ss_dssp E
T ss_pred c
Confidence 5
|
| >2vdw_A Vaccinia virus capping enzyme D1 subunit; nucleotidyltransferase, S-adenosyl-L-methionine, RNA metabolism, mRNA processing, methyltransferase, poxvirus; HET: SAH; 2.70A {Vaccinia virus} | Back alignment and structure |
|---|
Probab=99.67 E-value=3.4e-16 Score=129.97 Aligned_cols=112 Identities=10% Similarity=-0.015 Sum_probs=75.3
Q ss_pred cCCeEEEeCCCCcHHHHHHHHhCCCeEEEEeCChHHHHHHHHHhHHhcCCCCC-----cceEeeec-CCC------CCCC
Q 026036 77 ERRRCIELGSGTGALAIFLRKAMNLDITTSDYNDQEIEDNIAYNSTTNGITPA-----LPHIKHSW-GDA------FPIP 144 (244)
Q Consensus 77 ~~~~VLdlG~G~G~~~~~~a~~~~~~v~~~D~~~~~l~~~~~~~~~~~~~~~~-----~~~~~~~~-~~~------~~~~ 144 (244)
++.+|||||||+|.....++.....+|+|+|+|+.|+ +.+++.....+...+ +.....+. ++. .+..
T Consensus 48 ~~~~VLDlGCG~G~~l~~~~~~~~~~v~GiD~S~~~l-~~A~~~~~~~~~~~~~~~~~~~f~~~d~~~d~~~~~l~~~~~ 126 (302)
T 2vdw_A 48 NKRKVLAIDFGNGADLEKYFYGEIALLVATDPDADAI-ARGNERYNKLNSGIKTKYYKFDYIQETIRSDTFVSSVREVFY 126 (302)
T ss_dssp SCCEEEETTCTTTTTHHHHHHTTCSEEEEEESCHHHH-HHHHHHHHHHCC----CCCEEEEEECCTTSSSHHHHHHTTCC
T ss_pred CCCeEEEEecCCcHhHHHHHhcCCCeEEEEECCHHHH-HHHHHHHHhccccccccccccchhhhhcccchhhhhhhcccc
Confidence 4789999999999766555555567999999999998 667665543332100 11111111 111 1234
Q ss_pred CCCccEEEEcccccCCcChHHHHHHHHHHHHhcCCCCceEeeccc
Q 026036 145 NPDWDLILASDILLYVKQYSNLIKSLSVLLKSYKPKDSQVGHLTK 189 (244)
Q Consensus 145 ~~~fD~I~~~~~l~~~~~~~~l~~~l~~~~~~lk~gG~~~~~~~~ 189 (244)
+++||+|+|..++++....+....++++++++|||||++++.++.
T Consensus 127 ~~~FD~V~~~~~lhy~~~~~~~~~~l~~~~r~LkpGG~~i~~~~~ 171 (302)
T 2vdw_A 127 FGKFNIIDWQFAIHYSFHPRHYATVMNNLSELTASGGKVLITTMD 171 (302)
T ss_dssp SSCEEEEEEESCGGGTCSTTTHHHHHHHHHHHEEEEEEEEEEEEC
T ss_pred CCCeeEEEECchHHHhCCHHHHHHHHHHHHHHcCCCCEEEEEeCC
Confidence 578999999998843222223469999999999999999888554
|
| >1dus_A MJ0882; hypothetical protein, methanococcus jannaschii, structural genomics, BSGC structure funded by NIH; 1.80A {Methanocaldococcus jannaschii} SCOP: c.66.1.4 | Back alignment and structure |
|---|
Probab=99.67 E-value=3.1e-15 Score=115.49 Aligned_cols=115 Identities=14% Similarity=0.135 Sum_probs=86.6
Q ss_pred HHHHhhccCcccCCeEEEeCCCCcHHHHHHHHhCCCeEEEEeCChHHHHHHHHHhHHhcCCCC-CcceEeeecCCCCCCC
Q 026036 66 AEWLMHHREWIERRRCIELGSGTGALAIFLRKAMNLDITTSDYNDQEIEDNIAYNSTTNGITP-ALPHIKHSWGDAFPIP 144 (244)
Q Consensus 66 ~~~~~~~~~~~~~~~VLdlG~G~G~~~~~~a~~~~~~v~~~D~~~~~l~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~ 144 (244)
++.+.......++.+|||+|||+|.++..+++. +.+|+++|+++.++ +.++++...++++. ++..+..+..+. ..
T Consensus 41 ~~~l~~~~~~~~~~~vLdiG~G~G~~~~~~~~~-~~~v~~~D~~~~~~-~~a~~~~~~~~~~~~~~~~~~~d~~~~--~~ 116 (194)
T 1dus_A 41 TKILVENVVVDKDDDILDLGCGYGVIGIALADE-VKSTTMADINRRAI-KLAKENIKLNNLDNYDIRVVHSDLYEN--VK 116 (194)
T ss_dssp HHHHHHHCCCCTTCEEEEETCTTSHHHHHHGGG-SSEEEEEESCHHHH-HHHHHHHHHTTCTTSCEEEEECSTTTT--CT
T ss_pred HHHHHHHcccCCCCeEEEeCCCCCHHHHHHHHc-CCeEEEEECCHHHH-HHHHHHHHHcCCCccceEEEECchhcc--cc
Confidence 333433344457889999999999999999887 88999999999987 88888887776633 244554444442 23
Q ss_pred CCCccEEEEcccccCCcChHHHHHHHHHHHHhcCCCCceEee
Q 026036 145 NPDWDLILASDILLYVKQYSNLIKSLSVLLKSYKPKDSQVGH 186 (244)
Q Consensus 145 ~~~fD~I~~~~~l~~~~~~~~l~~~l~~~~~~lk~gG~~~~~ 186 (244)
.++||+|+++.++ ++ ........++++.+.|+|||++++.
T Consensus 117 ~~~~D~v~~~~~~-~~-~~~~~~~~l~~~~~~L~~gG~l~~~ 156 (194)
T 1dus_A 117 DRKYNKIITNPPI-RA-GKEVLHRIIEEGKELLKDNGEIWVV 156 (194)
T ss_dssp TSCEEEEEECCCS-TT-CHHHHHHHHHHHHHHEEEEEEEEEE
T ss_pred cCCceEEEECCCc-cc-chhHHHHHHHHHHHHcCCCCEEEEE
Confidence 5689999998876 32 2456678999999999999988876
|
| >3iv6_A Putative Zn-dependent alcohol dehydrogenase; alpha/beta fold, rossmann-fold, structural genomics, PSI-2, structure initiative; HET: SAM; 2.70A {Rhodobacter sphaeroides} | Back alignment and structure |
|---|
Probab=99.67 E-value=6.5e-16 Score=125.21 Aligned_cols=111 Identities=11% Similarity=0.062 Sum_probs=84.6
Q ss_pred HHHHhhccCcccCCeEEEeCCCCcHHHHHHHHhCCCeEEEEeCChHHHHHHHHHhHHhcCCCCCcceEeeecCCCCC---
Q 026036 66 AEWLMHHREWIERRRCIELGSGTGALAIFLRKAMNLDITTSDYNDQEIEDNIAYNSTTNGITPALPHIKHSWGDAFP--- 142 (244)
Q Consensus 66 ~~~~~~~~~~~~~~~VLdlG~G~G~~~~~~a~~~~~~v~~~D~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--- 142 (244)
.+.+.......++.+|||||||+|.+++.+++. +.+|+++|+|+.|+ +.++++...+. +..++.+...
T Consensus 34 ~~~il~~l~l~~g~~VLDlGcGtG~~a~~La~~-g~~V~gvD~S~~ml-~~Ar~~~~~~~-------v~~~~~~~~~~~~ 104 (261)
T 3iv6_A 34 RENDIFLENIVPGSTVAVIGASTRFLIEKALER-GASVTVFDFSQRMC-DDLAEALADRC-------VTIDLLDITAEIP 104 (261)
T ss_dssp HHHHHHTTTCCTTCEEEEECTTCHHHHHHHHHT-TCEEEEEESCHHHH-HHHHHHTSSSC-------CEEEECCTTSCCC
T ss_pred HHHHHHhcCCCCcCEEEEEeCcchHHHHHHHhc-CCEEEEEECCHHHH-HHHHHHHHhcc-------ceeeeeecccccc
Confidence 344555556678899999999999999999887 67999999999998 78877765442 2333433211
Q ss_pred -CCCCCccEEEEcccccCCcChHHHHHHHHHHHHhcCCCCceEeec
Q 026036 143 -IPNPDWDLILASDILLYVKQYSNLIKSLSVLLKSYKPKDSQVGHL 187 (244)
Q Consensus 143 -~~~~~fD~I~~~~~l~~~~~~~~l~~~l~~~~~~lk~gG~~~~~~ 187 (244)
...++||+|+++.++ ++...+++...++++.++| |||+++++.
T Consensus 105 ~~~~~~fD~Vv~~~~l-~~~~~~~~~~~l~~l~~lL-PGG~l~lS~ 148 (261)
T 3iv6_A 105 KELAGHFDFVLNDRLI-NRFTTEEARRACLGMLSLV-GSGTVRASV 148 (261)
T ss_dssp GGGTTCCSEEEEESCG-GGSCHHHHHHHHHHHHHHH-TTSEEEEEE
T ss_pred cccCCCccEEEEhhhh-HhCCHHHHHHHHHHHHHhC-cCcEEEEEe
Confidence 124689999999988 5455567778999999999 999999873
|
| >3d2l_A SAM-dependent methyltransferase; ZP_00538691.1, structural G joint center for structural genomics, JCSG; HET: MSE; 1.90A {Exiguobacterium sibiricum 255-15} | Back alignment and structure |
|---|
Probab=99.67 E-value=2.1e-15 Score=120.85 Aligned_cols=116 Identities=12% Similarity=0.249 Sum_probs=84.6
Q ss_pred HHHHHHhhccCcccCCeEEEeCCCCcHHHHHHHHhCCCeEEEEeCChHHHHHHHHHhHHhcCCCCCcceEeeecCCCCCC
Q 026036 64 SFAEWLMHHREWIERRRCIELGSGTGALAIFLRKAMNLDITTSDYNDQEIEDNIAYNSTTNGITPALPHIKHSWGDAFPI 143 (244)
Q Consensus 64 ~l~~~~~~~~~~~~~~~VLdlG~G~G~~~~~~a~~~~~~v~~~D~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 143 (244)
.+.+++..... ++.+|||+|||+|.++..+++. .+|+++|+++.++ +.++++...++. ++..+..+..+ .+.
T Consensus 22 ~~~~~~~~~~~--~~~~vLdiG~G~G~~~~~l~~~--~~v~~vD~s~~~~-~~a~~~~~~~~~--~~~~~~~d~~~-~~~ 93 (243)
T 3d2l_A 22 EWVAWVLEQVE--PGKRIADIGCGTGTATLLLADH--YEVTGVDLSEEML-EIAQEKAMETNR--HVDFWVQDMRE-LEL 93 (243)
T ss_dssp HHHHHHHHHSC--TTCEEEEESCTTCHHHHHHTTT--SEEEEEESCHHHH-HHHHHHHHHTTC--CCEEEECCGGG-CCC
T ss_pred HHHHHHHHHcC--CCCeEEEecCCCCHHHHHHhhC--CeEEEEECCHHHH-HHHHHhhhhcCC--ceEEEEcChhh-cCC
Confidence 34455554433 5689999999999999988775 7999999999987 777777665442 23344333322 222
Q ss_pred CCCCccEEEEcc-cccCCcChHHHHHHHHHHHHhcCCCCceEeecc
Q 026036 144 PNPDWDLILASD-ILLYVKQYSNLIKSLSVLLKSYKPKDSQVGHLT 188 (244)
Q Consensus 144 ~~~~fD~I~~~~-~l~~~~~~~~l~~~l~~~~~~lk~gG~~~~~~~ 188 (244)
.++||+|++.. ++.+.....++.+.++++.++|+|||++++.++
T Consensus 94 -~~~fD~v~~~~~~~~~~~~~~~~~~~l~~~~~~L~pgG~l~~~~~ 138 (243)
T 3d2l_A 94 -PEPVDAITILCDSLNYLQTEADVKQTFDSAARLLTDGGKLLFDVH 138 (243)
T ss_dssp -SSCEEEEEECTTGGGGCCSHHHHHHHHHHHHHHEEEEEEEEEEEE
T ss_pred -CCCcCEEEEeCCchhhcCCHHHHHHHHHHHHHhcCCCeEEEEEcC
Confidence 26899999975 774444557778999999999999999988643
|
| >3bxo_A N,N-dimethyltransferase; desosamine, sugar, carbohydrate, antibiotic, SAM, adoMet; HET: SAM UPP; 2.00A {Streptomyces venezuelae} | Back alignment and structure |
|---|
Probab=99.67 E-value=2e-15 Score=120.62 Aligned_cols=114 Identities=12% Similarity=0.154 Sum_probs=81.9
Q ss_pred HHHHHHhhccCcccCCeEEEeCCCCcHHHHHHHHhCCCeEEEEeCChHHHHHHHHHhHHhcCCCCCcceEeeecCCCCCC
Q 026036 64 SFAEWLMHHREWIERRRCIELGSGTGALAIFLRKAMNLDITTSDYNDQEIEDNIAYNSTTNGITPALPHIKHSWGDAFPI 143 (244)
Q Consensus 64 ~l~~~~~~~~~~~~~~~VLdlG~G~G~~~~~~a~~~~~~v~~~D~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 143 (244)
.+.+++.... .++.+|||+|||+|.++..+++.+ .+|+++|+++.++ +.++++.. ++..+..+..+ .+.
T Consensus 29 ~~~~~l~~~~--~~~~~vLdiG~G~G~~~~~l~~~~-~~v~~~D~s~~~~-~~a~~~~~------~~~~~~~d~~~-~~~ 97 (239)
T 3bxo_A 29 DIADLVRSRT--PEASSLLDVACGTGTHLEHFTKEF-GDTAGLELSEDML-THARKRLP------DATLHQGDMRD-FRL 97 (239)
T ss_dssp HHHHHHHHHC--TTCCEEEEETCTTSHHHHHHHHHH-SEEEEEESCHHHH-HHHHHHCT------TCEEEECCTTT-CCC
T ss_pred HHHHHHHHhc--CCCCeEEEecccCCHHHHHHHHhC-CcEEEEeCCHHHH-HHHHHhCC------CCEEEECCHHH-ccc
Confidence 4445554433 467899999999999999998874 4999999999987 66665531 12344433332 233
Q ss_pred CCCCccEEEE-cccccCCcChHHHHHHHHHHHHhcCCCCceEeeccc
Q 026036 144 PNPDWDLILA-SDILLYVKQYSNLIKSLSVLLKSYKPKDSQVGHLTK 189 (244)
Q Consensus 144 ~~~~fD~I~~-~~~l~~~~~~~~l~~~l~~~~~~lk~gG~~~~~~~~ 189 (244)
.++||+|+| .+++.+....+++.+.++++.+.|||||++++....
T Consensus 98 -~~~~D~v~~~~~~~~~~~~~~~~~~~l~~~~~~L~pgG~l~~~~~~ 143 (239)
T 3bxo_A 98 -GRKFSAVVSMFSSVGYLKTTEELGAAVASFAEHLEPGGVVVVEPWW 143 (239)
T ss_dssp -SSCEEEEEECTTGGGGCCSHHHHHHHHHHHHHTEEEEEEEEECCCC
T ss_pred -CCCCcEEEEcCchHhhcCCHHHHHHHHHHHHHhcCCCeEEEEEecc
Confidence 568999996 447744444567789999999999999999887443
|
| >2nxc_A L11 mtase, ribosomal protein L11 methyltransferase; transferase S-adenosly-L-methionine dependent methyltransfer posttranslational modification; 1.59A {Thermus thermophilus} SCOP: c.66.1.39 PDB: 1ufk_A 2nxe_A* 2nxj_A 2nxn_A 2zbp_A* 2zbq_A* 2zbr_A* 3cjq_A* 3cjr_A* 3cju_A* 3egv_A* 3cjt_A* | Back alignment and structure |
|---|
Probab=99.67 E-value=4.9e-16 Score=125.97 Aligned_cols=141 Identities=17% Similarity=0.161 Sum_probs=102.4
Q ss_pred eechHHHHHHHHhhccCcccCCeEEEeCCCCcHHHHHHHHhCCCeEEEEeCChHHHHHHHHHhHHhcCCCCCcceEeeec
Q 026036 58 LWPGTFSFAEWLMHHREWIERRRCIELGSGTGALAIFLRKAMNLDITTSDYNDQEIEDNIAYNSTTNGITPALPHIKHSW 137 (244)
Q Consensus 58 ~w~~~~~l~~~~~~~~~~~~~~~VLdlG~G~G~~~~~~a~~~~~~v~~~D~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~ 137 (244)
..+.+....+++... ..++.+|||+|||+|.+++.+++.+. +|+++|+++.++ +.+++|...+++. +..+..+.
T Consensus 103 ~~~tt~~~~~~l~~~--~~~~~~VLDiGcG~G~l~~~la~~g~-~v~gvDi~~~~v-~~a~~n~~~~~~~--v~~~~~d~ 176 (254)
T 2nxc_A 103 HHETTRLALKALARH--LRPGDKVLDLGTGSGVLAIAAEKLGG-KALGVDIDPMVL-PQAEANAKRNGVR--PRFLEGSL 176 (254)
T ss_dssp CSHHHHHHHHHHHHH--CCTTCEEEEETCTTSHHHHHHHHTTC-EEEEEESCGGGH-HHHHHHHHHTTCC--CEEEESCH
T ss_pred CCHHHHHHHHHHHHh--cCCCCEEEEecCCCcHHHHHHHHhCC-eEEEEECCHHHH-HHHHHHHHHcCCc--EEEEECCh
Confidence 345555556666544 34678999999999999999888644 999999999987 8888998888763 33333222
Q ss_pred CCCCCCCCCCccEEEEcccccCCcChHHHHHHHHHHHHhcCCCCceEeecccccCCCCCCCCCCCeEEEeeeeccCccch
Q 026036 138 GDAFPIPNPDWDLILASDILLYVKQYSNLIKSLSVLLKSYKPKDSQVGHLTKNEQGEGTEGLPWPAFLMSWRRRIGKEDE 217 (244)
Q Consensus 138 ~~~~~~~~~~fD~I~~~~~l~~~~~~~~l~~~l~~~~~~lk~gG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 217 (244)
.+. ...++||+|+++.+. ..+...++.+.+.|||||+++++... . ...
T Consensus 177 ~~~--~~~~~fD~Vv~n~~~------~~~~~~l~~~~~~LkpgG~lils~~~---------------------~---~~~ 224 (254)
T 2nxc_A 177 EAA--LPFGPFDLLVANLYA------ELHAALAPRYREALVPGGRALLTGIL---------------------K---DRA 224 (254)
T ss_dssp HHH--GGGCCEEEEEEECCH------HHHHHHHHHHHHHEEEEEEEEEEEEE---------------------G---GGH
T ss_pred hhc--CcCCCCCEEEECCcH------HHHHHHHHHHHHHcCCCCEEEEEeec---------------------c---CCH
Confidence 221 234689999986543 34568899999999999988875111 0 124
Q ss_pred hhHHHHHhhcCCeEEEecc
Q 026036 218 TIFFTSCENAGLEVKHLGS 236 (244)
Q Consensus 218 ~~~~~~l~~~Gf~v~~~~~ 236 (244)
..+.+.++++||+++.+..
T Consensus 225 ~~v~~~l~~~Gf~~~~~~~ 243 (254)
T 2nxc_A 225 PLVREAMAGAGFRPLEEAA 243 (254)
T ss_dssp HHHHHHHHHTTCEEEEEEE
T ss_pred HHHHHHHHHCCCEEEEEec
Confidence 7888999999999887654
|
| >3gwz_A MMCR; methyltransferase, mitomycin, S-adenosyl methionine, transferase; HET: MSE SAH; 1.91A {Streptomyces lavendulae} PDB: 3gxo_A* | Back alignment and structure |
|---|
Probab=99.67 E-value=6.5e-16 Score=131.86 Aligned_cols=159 Identities=15% Similarity=0.181 Sum_probs=109.0
Q ss_pred HhhccCcccCCeEEEeCCCCcHHHHHHHHhC-CCeEEEEeCChHHHHHHHHHhHHhcCCCCCcceEeeecCCCCCCCCCC
Q 026036 69 LMHHREWIERRRCIELGSGTGALAIFLRKAM-NLDITTSDYNDQEIEDNIAYNSTTNGITPALPHIKHSWGDAFPIPNPD 147 (244)
Q Consensus 69 ~~~~~~~~~~~~VLdlG~G~G~~~~~~a~~~-~~~v~~~D~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 147 (244)
+.......++.+|||+|||+|..+..+++.. +.+++++|+ +.++ +.++++....++..++..+..+..++ .+. .
T Consensus 194 l~~~~~~~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~-~~a~~~~~~~~l~~~v~~~~~d~~~~--~p~-~ 268 (369)
T 3gwz_A 194 VAAAYDFSGAATAVDIGGGRGSLMAAVLDAFPGLRGTLLER-PPVA-EEARELLTGRGLADRCEILPGDFFET--IPD-G 268 (369)
T ss_dssp HHHHSCCTTCSEEEEETCTTSHHHHHHHHHCTTCEEEEEEC-HHHH-HHHHHHHHHTTCTTTEEEEECCTTTC--CCS-S
T ss_pred HHHhCCCccCcEEEEeCCCccHHHHHHHHHCCCCeEEEEcC-HHHH-HHHHHhhhhcCcCCceEEeccCCCCC--CCC-C
Confidence 3333444567899999999999999998876 678999999 8877 78888777776655566665555432 222 7
Q ss_pred ccEEEEcccccCCcChHHHHHHHHHHHHhcCCCCceEeecccccCCCCCCCCCCCe--EEEeeeeccCccchhhHHHHHh
Q 026036 148 WDLILASDILLYVKQYSNLIKSLSVLLKSYKPKDSQVGHLTKNEQGEGTEGLPWPA--FLMSWRRRIGKEDETIFFTSCE 225 (244)
Q Consensus 148 fD~I~~~~~l~~~~~~~~l~~~l~~~~~~lk~gG~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~l~ 225 (244)
||+|++.+++ ++...+...+.++++++.|+|||++++............ ..... ++.....+ ..+.+++.++++
T Consensus 269 ~D~v~~~~vl-h~~~d~~~~~~L~~~~~~L~pgG~l~i~e~~~~~~~~~~-~~~~d~~~~~~~~g~--~~t~~e~~~ll~ 344 (369)
T 3gwz_A 269 ADVYLIKHVL-HDWDDDDVVRILRRIATAMKPDSRLLVIDNLIDERPAAS-TLFVDLLLLVLVGGA--ERSESEFAALLE 344 (369)
T ss_dssp CSEEEEESCG-GGSCHHHHHHHHHHHHTTCCTTCEEEEEEEBCCSSCCHH-HHHHHHHHHHHHSCC--CBCHHHHHHHHH
T ss_pred ceEEEhhhhh-ccCCHHHHHHHHHHHHHHcCCCCEEEEEEeccCCCCCCc-hhHhhHHHHhhcCCc--cCCHHHHHHHHH
Confidence 9999999999 444555666899999999999999998754443321110 00000 00000111 123588999999
Q ss_pred hcCCeEEEecc
Q 026036 226 NAGLEVKHLGS 236 (244)
Q Consensus 226 ~~Gf~v~~~~~ 236 (244)
++||+++++..
T Consensus 345 ~aGf~~~~~~~ 355 (369)
T 3gwz_A 345 KSGLRVERSLP 355 (369)
T ss_dssp TTTEEEEEEEE
T ss_pred HCCCeEEEEEE
Confidence 99999988754
|
| >2yxd_A Probable cobalt-precorrin-6Y C(15)-methyltransfer [decarboxylating]; alpha and beta protein (A/B) class; HET: MES; 2.30A {Methanocaldococcus jannaschii} | Back alignment and structure |
|---|
Probab=99.66 E-value=1.3e-15 Score=116.64 Aligned_cols=138 Identities=16% Similarity=0.172 Sum_probs=101.3
Q ss_pred chHHHHHHHHhhccCcccCCeEEEeCCCCcHHHHHHHHhCCCeEEEEeCChHHHHHHHHHhHHhcCCCCCcceEeeecCC
Q 026036 60 PGTFSFAEWLMHHREWIERRRCIELGSGTGALAIFLRKAMNLDITTSDYNDQEIEDNIAYNSTTNGITPALPHIKHSWGD 139 (244)
Q Consensus 60 ~~~~~l~~~~~~~~~~~~~~~VLdlG~G~G~~~~~~a~~~~~~v~~~D~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 139 (244)
+....+.+++.......++.+|||+|||+|.++..+++ .+.+|+++|+++.++ +.++++...+++ .++..+..+..+
T Consensus 18 ~~~~~~~~~~~~~~~~~~~~~vLdiG~G~G~~~~~l~~-~~~~v~~vD~~~~~~-~~a~~~~~~~~~-~~~~~~~~d~~~ 94 (183)
T 2yxd_A 18 ITKEEIRAVSIGKLNLNKDDVVVDVGCGSGGMTVEIAK-RCKFVYAIDYLDGAI-EVTKQNLAKFNI-KNCQIIKGRAED 94 (183)
T ss_dssp CCCHHHHHHHHHHHCCCTTCEEEEESCCCSHHHHHHHT-TSSEEEEEECSHHHH-HHHHHHHHHTTC-CSEEEEESCHHH
T ss_pred cCHHHHHHHHHHHcCCCCCCEEEEeCCCCCHHHHHHHh-cCCeEEEEeCCHHHH-HHHHHHHHHcCC-CcEEEEECCccc
Confidence 34556666666666666888999999999999999987 688999999999987 888888887766 234444444433
Q ss_pred CCCCCCCCccEEEEcccccCCcChHHHHHHHHHHHHhcCCCCceEeecccccCCCCCCCCCCCeEEEeeeeccCccchhh
Q 026036 140 AFPIPNPDWDLILASDILLYVKQYSNLIKSLSVLLKSYKPKDSQVGHLTKNEQGEGTEGLPWPAFLMSWRRRIGKEDETI 219 (244)
Q Consensus 140 ~~~~~~~~fD~I~~~~~l~~~~~~~~l~~~l~~~~~~lk~gG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 219 (244)
+...++||+|+++.+ ....+.++.+.+. |||++++..... .....
T Consensus 95 --~~~~~~~D~i~~~~~-------~~~~~~l~~~~~~--~gG~l~~~~~~~------------------------~~~~~ 139 (183)
T 2yxd_A 95 --VLDKLEFNKAFIGGT-------KNIEKIIEILDKK--KINHIVANTIVL------------------------ENAAK 139 (183)
T ss_dssp --HGGGCCCSEEEECSC-------SCHHHHHHHHHHT--TCCEEEEEESCH------------------------HHHHH
T ss_pred --cccCCCCcEEEECCc-------ccHHHHHHHHhhC--CCCEEEEEeccc------------------------ccHHH
Confidence 233368999999877 2334778888887 999888762111 12367
Q ss_pred HHHHHhhcCCeEEEec
Q 026036 220 FFTSCENAGLEVKHLG 235 (244)
Q Consensus 220 ~~~~l~~~Gf~v~~~~ 235 (244)
+.+.++++|++++.+.
T Consensus 140 ~~~~l~~~g~~~~~~~ 155 (183)
T 2yxd_A 140 IINEFESRGYNVDAVN 155 (183)
T ss_dssp HHHHHHHTTCEEEEEE
T ss_pred HHHHHHHcCCeEEEEE
Confidence 8889999999888764
|
| >2p8j_A S-adenosylmethionine-dependent methyltransferase; NP_349143.1; HET: PGE GOL; 2.00A {Clostridium acetobutylicum} | Back alignment and structure |
|---|
Probab=99.66 E-value=5.7e-16 Score=121.42 Aligned_cols=111 Identities=9% Similarity=0.138 Sum_probs=82.6
Q ss_pred ccCCeEEEeCCCCcHHHHHHHHhCCCeEEEEeCChHHHHHHHHHhHHhcCCCCCcceEeeecCCCCCCCCCCccEEEEcc
Q 026036 76 IERRRCIELGSGTGALAIFLRKAMNLDITTSDYNDQEIEDNIAYNSTTNGITPALPHIKHSWGDAFPIPNPDWDLILASD 155 (244)
Q Consensus 76 ~~~~~VLdlG~G~G~~~~~~a~~~~~~v~~~D~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fD~I~~~~ 155 (244)
.++.+|||+|||+|..+..++...+.+|+++|+|+.++ +.++++...++. ++..+..+..+ ++..+++||+|++++
T Consensus 22 ~~~~~vLDiGcG~G~~~~~~~~~~~~~v~~vD~s~~~~-~~a~~~~~~~~~--~~~~~~~d~~~-~~~~~~~fD~v~~~~ 97 (209)
T 2p8j_A 22 NLDKTVLDCGAGGDLPPLSIFVEDGYKTYGIEISDLQL-KKAENFSRENNF--KLNISKGDIRK-LPFKDESMSFVYSYG 97 (209)
T ss_dssp SSCSEEEEESCCSSSCTHHHHHHTTCEEEEEECCHHHH-HHHHHHHHHHTC--CCCEEECCTTS-CCSCTTCEEEEEECS
T ss_pred CCCCEEEEECCCCCHHHHHHHHhCCCEEEEEECCHHHH-HHHHHHHHhcCC--ceEEEECchhh-CCCCCCceeEEEEcC
Confidence 36789999999999875444444578999999999987 777776655442 23444444432 455567899999999
Q ss_pred cccCCcChHHHHHHHHHHHHhcCCCCceEeeccccc
Q 026036 156 ILLYVKQYSNLIKSLSVLLKSYKPKDSQVGHLTKNE 191 (244)
Q Consensus 156 ~l~~~~~~~~l~~~l~~~~~~lk~gG~~~~~~~~~~ 191 (244)
++++ ...++..+.++++.+.|||||++++......
T Consensus 98 ~l~~-~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~ 132 (209)
T 2p8j_A 98 TIFH-MRKNDVKEAIDEIKRVLKPGGLACINFLTTK 132 (209)
T ss_dssp CGGG-SCHHHHHHHHHHHHHHEEEEEEEEEEEEETT
T ss_pred hHHh-CCHHHHHHHHHHHHHHcCCCcEEEEEEeccc
Confidence 9844 4456778999999999999999999865543
|
| >3bkx_A SAM-dependent methyltransferase; YP_807781.1, cyclopropane-fatty-acyl-phospholipid synthase-L protein, methyltransferase domain; 1.85A {Lactobacillus casei} | Back alignment and structure |
|---|
Probab=99.66 E-value=2e-15 Score=123.44 Aligned_cols=164 Identities=11% Similarity=0.036 Sum_probs=104.1
Q ss_pred HHHhhccCcccCCeEEEeCCCCcHHHHHHHHhCC--CeEEEEeCChH------HHHHHHHHhHHhcCCCCCcceEeee-c
Q 026036 67 EWLMHHREWIERRRCIELGSGTGALAIFLRKAMN--LDITTSDYNDQ------EIEDNIAYNSTTNGITPALPHIKHS-W 137 (244)
Q Consensus 67 ~~~~~~~~~~~~~~VLdlG~G~G~~~~~~a~~~~--~~v~~~D~~~~------~l~~~~~~~~~~~~~~~~~~~~~~~-~ 137 (244)
..+.......++.+|||||||+|.++..++...+ .+|+++|+|+. ++ +.++++...+++..++..+..+ .
T Consensus 33 ~~l~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~g~~~~v~gvD~s~~~~~~~~~~-~~a~~~~~~~~~~~~v~~~~~d~~ 111 (275)
T 3bkx_A 33 LAIAEAWQVKPGEKILEIGCGQGDLSAVLADQVGSSGHVTGIDIASPDYGAPLTL-GQAWNHLLAGPLGDRLTVHFNTNL 111 (275)
T ss_dssp HHHHHHHTCCTTCEEEEESCTTSHHHHHHHHHHCTTCEEEEECSSCTTCCSSSCH-HHHHHHHHTSTTGGGEEEECSCCT
T ss_pred HHHHHHcCCCCCCEEEEeCCCCCHHHHHHHHHhCCCCEEEEEECCccccccHHHH-HHHHHHHHhcCCCCceEEEECChh
Confidence 3344444556889999999999999999988743 79999999986 76 7777777766553334444333 1
Q ss_pred C-CCCCCCCCCccEEEEcccccCCcChHHHHHHHHHHHHhcCCCCceEeecccccCCCCCCCCC-CC----eEE------
Q 026036 138 G-DAFPIPNPDWDLILASDILLYVKQYSNLIKSLSVLLKSYKPKDSQVGHLTKNEQGEGTEGLP-WP----AFL------ 205 (244)
Q Consensus 138 ~-~~~~~~~~~fD~I~~~~~l~~~~~~~~l~~~l~~~~~~lk~gG~~~~~~~~~~~~~~~~~~~-~~----~~~------ 205 (244)
. ..+++.+++||+|+++.++++..... ..++.+.++++|||++++............... .. .++
T Consensus 112 ~~~~~~~~~~~fD~v~~~~~l~~~~~~~---~~~~~~~~l~~~gG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 188 (275)
T 3bkx_A 112 SDDLGPIADQHFDRVVLAHSLWYFASAN---ALALLFKNMAAVCDHVDVAEWSMQPTALDQIGHLQAAMIQGLLYAIAPS 188 (275)
T ss_dssp TTCCGGGTTCCCSEEEEESCGGGSSCHH---HHHHHHHHHTTTCSEEEEEEECSSCSSGGGHHHHHHHHHHHHHHHHSCC
T ss_pred hhccCCCCCCCEEEEEEccchhhCCCHH---HHHHHHHHHhCCCCEEEEEEecCCCCchhhhhHHHHHHHHHHHhhcccc
Confidence 1 12334567899999999995544332 556666677777999988744432221000000 00 000
Q ss_pred -EeeeeccCccchhhHHHHHhhcCCeEEEecc
Q 026036 206 -MSWRRRIGKEDETIFFTSCENAGLEVKHLGS 236 (244)
Q Consensus 206 -~~~~~~~~~~~~~~~~~~l~~~Gf~v~~~~~ 236 (244)
....... .+...+.++++++||+++++..
T Consensus 189 ~~~~~~~~--~s~~~l~~~l~~aGf~~~~~~~ 218 (275)
T 3bkx_A 189 DVANIRTL--ITPDTLAQIAHDNTWTYTAGTI 218 (275)
T ss_dssp TTCSCCCC--CCHHHHHHHHHHHTCEEEECCC
T ss_pred cccccccc--CCHHHHHHHHHHCCCeeEEEEE
Confidence 0000112 2357899999999999998765
|
| >3q87_B N6 adenine specific DNA methylase; SAM-methyltransferase, methyltransferase, methylation, trans activator-transferase complex; HET: SAM; 2.00A {Encephalitozoon cuniculi} | Back alignment and structure |
|---|
Probab=99.66 E-value=1.1e-15 Score=116.38 Aligned_cols=140 Identities=13% Similarity=0.111 Sum_probs=97.1
Q ss_pred eeechHHHHHHHHhhccCcccCCeEEEeCCCCcHHHHHHHHhCCCeEEEEeCChHHHHHHHHHhHHhcCCCCCcceEeee
Q 026036 57 FLWPGTFSFAEWLMHHREWIERRRCIELGSGTGALAIFLRKAMNLDITTSDYNDQEIEDNIAYNSTTNGITPALPHIKHS 136 (244)
Q Consensus 57 ~~w~~~~~l~~~~~~~~~~~~~~~VLdlG~G~G~~~~~~a~~~~~~v~~~D~~~~~l~~~~~~~~~~~~~~~~~~~~~~~ 136 (244)
...|.+..+.+++... ..++.+|||+|||+|.++..+++.+ +|+|+|+|+.++ +. . .++..+..+
T Consensus 5 ~P~~~~~~l~~~l~~~--~~~~~~vLD~GcG~G~~~~~l~~~~--~v~gvD~s~~~~-~~------~----~~~~~~~~d 69 (170)
T 3q87_B 5 EPGEDTYTLMDALERE--GLEMKIVLDLGTSTGVITEQLRKRN--TVVSTDLNIRAL-ES------H----RGGNLVRAD 69 (170)
T ss_dssp CCCHHHHHHHHHHHHH--TCCSCEEEEETCTTCHHHHHHTTTS--EEEEEESCHHHH-HT------C----SSSCEEECS
T ss_pred CcCccHHHHHHHHHhh--cCCCCeEEEeccCccHHHHHHHhcC--cEEEEECCHHHH-hc------c----cCCeEEECC
Confidence 4556778888885432 1356799999999999999998875 999999999987 33 1 223444444
Q ss_pred cCCCCCCCCCCccEEEEcccccCCcCh------HHHHHHHHHHHHhcCCCCceEeecccccCCCCCCCCCCCeEEEeeee
Q 026036 137 WGDAFPIPNPDWDLILASDILLYVKQY------SNLIKSLSVLLKSYKPKDSQVGHLTKNEQGEGTEGLPWPAFLMSWRR 210 (244)
Q Consensus 137 ~~~~~~~~~~~fD~I~~~~~l~~~~~~------~~l~~~l~~~~~~lk~gG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 210 (244)
..+ +..+++||+|+++.+++..... ......++++.+.+ |||++++.....
T Consensus 70 ~~~--~~~~~~fD~i~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~l-pgG~l~~~~~~~-------------------- 126 (170)
T 3q87_B 70 LLC--SINQESVDVVVFNPPYVPDTDDPIIGGGYLGREVIDRFVDAV-TVGMLYLLVIEA-------------------- 126 (170)
T ss_dssp TTT--TBCGGGCSEEEECCCCBTTCCCTTTBCCGGGCHHHHHHHHHC-CSSEEEEEEEGG--------------------
T ss_pred hhh--hcccCCCCEEEECCCCccCCccccccCCcchHHHHHHHHhhC-CCCEEEEEEecC--------------------
Confidence 433 2334789999998876332111 12346778888888 999888762111
Q ss_pred ccCccchhhHHHHHhhcCCeEEEeccEE
Q 026036 211 RIGKEDETIFFTSCENAGLEVKHLGSRV 238 (244)
Q Consensus 211 ~~~~~~~~~~~~~l~~~Gf~v~~~~~~~ 238 (244)
.....+.++++++||+++.+..+.
T Consensus 127 ----~~~~~l~~~l~~~gf~~~~~~~~~ 150 (170)
T 3q87_B 127 ----NRPKEVLARLEERGYGTRILKVRK 150 (170)
T ss_dssp ----GCHHHHHHHHHHTTCEEEEEEEEE
T ss_pred ----CCHHHHHHHHHHCCCcEEEEEeec
Confidence 124788899999999998886443
|
| >3kr9_A SAM-dependent methyltransferase; class I rossmann-like methyltransferase fold; 2.00A {Streptococcus pneumoniae} PDB: 3ku1_A* | Back alignment and structure |
|---|
Probab=99.65 E-value=2e-15 Score=119.45 Aligned_cols=133 Identities=12% Similarity=0.046 Sum_probs=99.5
Q ss_pred ccCCeEEEeCCCCcHHHHHHHHhC-CCeEEEEeCChHHHHHHHHHhHHhcCCCCCcceEeeecCCCCCCCCCCccEEEEc
Q 026036 76 IERRRCIELGSGTGALAIFLRKAM-NLDITTSDYNDQEIEDNIAYNSTTNGITPALPHIKHSWGDAFPIPNPDWDLILAS 154 (244)
Q Consensus 76 ~~~~~VLdlG~G~G~~~~~~a~~~-~~~v~~~D~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fD~I~~~ 154 (244)
.++.+|||+|||+|.+++.+++.+ ..+|+++|+++.++ +.+++|+..+++.+++..+..++.+.++. ..+||+|+.+
T Consensus 14 ~~g~~VlDIGtGsG~l~i~la~~~~~~~V~avDi~~~al-~~A~~N~~~~gl~~~i~~~~~d~l~~l~~-~~~~D~Ivia 91 (225)
T 3kr9_A 14 SQGAILLDVGSDHAYLPIELVERGQIKSAIAGEVVEGPY-QSAVKNVEAHGLKEKIQVRLANGLAAFEE-TDQVSVITIA 91 (225)
T ss_dssp CTTEEEEEETCSTTHHHHHHHHTTSEEEEEEEESSHHHH-HHHHHHHHHTTCTTTEEEEECSGGGGCCG-GGCCCEEEEE
T ss_pred CCCCEEEEeCCCcHHHHHHHHHhCCCCEEEEEECCHHHH-HHHHHHHHHcCCCceEEEEECchhhhccc-CcCCCEEEEc
Confidence 367899999999999999999876 56899999999997 89999999999866555554444333221 1269999876
Q ss_pred ccccCCcChHHHHHHHHHHHHhcCCCCceEeecccccCCCCCCCCCCCeEEEeeeeccCccchhhHHHHHhhcCCeEEEe
Q 026036 155 DILLYVKQYSNLIKSLSVLLKSYKPKDSQVGHLTKNEQGEGTEGLPWPAFLMSWRRRIGKEDETIFFTSCENAGLEVKHL 234 (244)
Q Consensus 155 ~~l~~~~~~~~l~~~l~~~~~~lk~gG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gf~v~~~ 234 (244)
.+- ...+...+......|+++|++++. . ... ...+.+.|.++||++.+.
T Consensus 92 G~G-----g~~i~~Il~~~~~~L~~~~~lVlq---------------------~--~~~---~~~vr~~L~~~Gf~i~~e 140 (225)
T 3kr9_A 92 GMG-----GRLIARILEEGLGKLANVERLILQ---------------------P--NNR---EDDLRIWLQDHGFQIVAE 140 (225)
T ss_dssp EEC-----HHHHHHHHHHTGGGCTTCCEEEEE---------------------E--SSC---HHHHHHHHHHTTEEEEEE
T ss_pred CCC-----hHHHHHHHHHHHHHhCCCCEEEEE---------------------C--CCC---HHHHHHHHHHCCCEEEEE
Confidence 653 334568888889999999987765 1 111 468889999999998765
Q ss_pred -----ccEEEEE
Q 026036 235 -----GSRVYCI 241 (244)
Q Consensus 235 -----~~~~~~~ 241 (244)
..+.|.|
T Consensus 141 ~lv~e~~~~Yei 152 (225)
T 3kr9_A 141 SILEEAGKFYEI 152 (225)
T ss_dssp EEEEETTEEEEE
T ss_pred EEEEECCEEEEE
Confidence 4555544
|
| >1wzn_A SAM-dependent methyltransferase; structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: SAH; 1.90A {Pyrococcus horikoshii} SCOP: c.66.1.43 | Back alignment and structure |
|---|
Probab=99.65 E-value=7.8e-15 Score=118.32 Aligned_cols=107 Identities=14% Similarity=0.219 Sum_probs=80.0
Q ss_pred ccCCeEEEeCCCCcHHHHHHHHhCCCeEEEEeCChHHHHHHHHHhHHhcCCCCCcceEeeecCCCCCCCCCCccEEEEcc
Q 026036 76 IERRRCIELGSGTGALAIFLRKAMNLDITTSDYNDQEIEDNIAYNSTTNGITPALPHIKHSWGDAFPIPNPDWDLILASD 155 (244)
Q Consensus 76 ~~~~~VLdlG~G~G~~~~~~a~~~~~~v~~~D~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fD~I~~~~ 155 (244)
.++.+|||+|||+|..+..+++. +.+|+++|+|+.++ +.++++...++. ++..+..+..+ ++. .++||+|++..
T Consensus 40 ~~~~~vLDlGcG~G~~~~~l~~~-~~~v~gvD~s~~~l-~~a~~~~~~~~~--~v~~~~~d~~~-~~~-~~~fD~v~~~~ 113 (252)
T 1wzn_A 40 REVRRVLDLACGTGIPTLELAER-GYEVVGLDLHEEML-RVARRKAKERNL--KIEFLQGDVLE-IAF-KNEFDAVTMFF 113 (252)
T ss_dssp SCCCEEEEETCTTCHHHHHHHHT-TCEEEEEESCHHHH-HHHHHHHHHTTC--CCEEEESCGGG-CCC-CSCEEEEEECS
T ss_pred cCCCEEEEeCCCCCHHHHHHHHC-CCeEEEEECCHHHH-HHHHHHHHhcCC--ceEEEECChhh-ccc-CCCccEEEEcC
Confidence 46789999999999999999876 77999999999997 778777766544 23444443332 222 35799999864
Q ss_pred cccCCcChHHHHHHHHHHHHhcCCCCceEeecc
Q 026036 156 ILLYVKQYSNLIKSLSVLLKSYKPKDSQVGHLT 188 (244)
Q Consensus 156 ~l~~~~~~~~l~~~l~~~~~~lk~gG~~~~~~~ 188 (244)
....+...++..+.++++.+.|+|||.+++.++
T Consensus 114 ~~~~~~~~~~~~~~l~~~~~~L~pgG~li~~~~ 146 (252)
T 1wzn_A 114 STIMYFDEEDLRKLFSKVAEALKPGGVFITDFP 146 (252)
T ss_dssp SGGGGSCHHHHHHHHHHHHHHEEEEEEEEEEEE
T ss_pred CchhcCCHHHHHHHHHHHHHHcCCCeEEEEecc
Confidence 332334456778999999999999999987644
|
| >2yqz_A Hypothetical protein TTHA0223; RNA methyltransferase, SAM, structural genomics, NPPSFA; HET: SAM; 1.80A {Thermus thermophilus} PDB: 2yr0_A | Back alignment and structure |
|---|
Probab=99.65 E-value=2.3e-15 Score=122.04 Aligned_cols=165 Identities=14% Similarity=0.144 Sum_probs=105.0
Q ss_pred HHHHHHHhh-ccCcccCCeEEEeCCCCcHHHHHHHHhCCCeEEEEeCChHHHHHHHHHhHHhcCCCCCcceEeeecCCCC
Q 026036 63 FSFAEWLMH-HREWIERRRCIELGSGTGALAIFLRKAMNLDITTSDYNDQEIEDNIAYNSTTNGITPALPHIKHSWGDAF 141 (244)
Q Consensus 63 ~~l~~~~~~-~~~~~~~~~VLdlG~G~G~~~~~~a~~~~~~v~~~D~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 141 (244)
..+.+.+.. .....++.+|||+|||+|..+..++.. +.+|+++|+|+.++ +.++++. .. ...++..+..+.. .+
T Consensus 24 ~~~~~~l~~~~~~~~~~~~vLDiG~G~G~~~~~l~~~-~~~v~~vD~s~~~~-~~a~~~~-~~-~~~~~~~~~~d~~-~~ 98 (263)
T 2yqz_A 24 GQIATAMASAVHPKGEEPVFLELGVGTGRIALPLIAR-GYRYIALDADAAML-EVFRQKI-AG-VDRKVQVVQADAR-AI 98 (263)
T ss_dssp HHHHHHHHHHCCCSSSCCEEEEETCTTSTTHHHHHTT-TCEEEEEESCHHHH-HHHHHHT-TT-SCTTEEEEESCTT-SC
T ss_pred HHHHHHHHHhhcCCCCCCEEEEeCCcCCHHHHHHHHC-CCEEEEEECCHHHH-HHHHHHh-hc-cCCceEEEEcccc-cC
Confidence 344444432 223457789999999999999999876 78999999999987 7777665 22 2223444444442 34
Q ss_pred CCCCCCccEEEEcccccCCcChHHHHHHHHHHHHhcCCCCceEeecccccCCC--------CCCC--CCCCeEEEeeeec
Q 026036 142 PIPNPDWDLILASDILLYVKQYSNLIKSLSVLLKSYKPKDSQVGHLTKNEQGE--------GTEG--LPWPAFLMSWRRR 211 (244)
Q Consensus 142 ~~~~~~fD~I~~~~~l~~~~~~~~l~~~l~~~~~~lk~gG~~~~~~~~~~~~~--------~~~~--~~~~~~~~~~~~~ 211 (244)
++.+++||+|+++.++++. ++....++++.++|||||++++......... .... ...+ ......
T Consensus 99 ~~~~~~fD~v~~~~~l~~~---~~~~~~l~~~~~~L~pgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~ 172 (263)
T 2yqz_A 99 PLPDESVHGVIVVHLWHLV---PDWPKVLAEAIRVLKPGGALLEGWDQAEASPEWTLQERWRAFAAEEGFP---VERGLH 172 (263)
T ss_dssp CSCTTCEEEEEEESCGGGC---TTHHHHHHHHHHHEEEEEEEEEEEEEECCCHHHHHHHHHHHHHHHHTCC---CCCCHH
T ss_pred CCCCCCeeEEEECCchhhc---CCHHHHHHHHHHHCCCCcEEEEEecCCCccHHHHHHHHHHHHHHHhCCC---cccccc
Confidence 5556789999999998443 2455899999999999999988722210000 0000 0000 000001
Q ss_pred cCccchhhHHHHHhhcCCeEEEeccEEEE
Q 026036 212 IGKEDETIFFTSCENAGLEVKHLGSRVYC 240 (244)
Q Consensus 212 ~~~~~~~~~~~~l~~~Gf~v~~~~~~~~~ 240 (244)
. .+...+.++++++||+++.+....+.
T Consensus 173 ~--~~~~~~~~~l~~~Gf~~~~~~~~~~~ 199 (263)
T 2yqz_A 173 A--KRLKEVEEALRRLGLKPRTREVARWR 199 (263)
T ss_dssp H--HHHHHHHHHHHHTTCCCEEEEEEEEE
T ss_pred c--CCHHHHHHHHHHcCCCcceEEEeeee
Confidence 1 12467788999999998876554443
|
| >4hg2_A Methyltransferase type 11; structural genomics, PSI-biology, midwest center for structu genomics, MCSG; HET: MES; 1.60A {Anaeromyxobacter dehalogenans} | Back alignment and structure |
|---|
Probab=99.65 E-value=2.4e-16 Score=127.95 Aligned_cols=109 Identities=14% Similarity=0.190 Sum_probs=81.1
Q ss_pred HHHHHHhhccCcccCCeEEEeCCCCcHHHHHHHHhCCCeEEEEeCChHHHHHHHHHhHHhcCCCCCcceEeeecCCCCCC
Q 026036 64 SFAEWLMHHREWIERRRCIELGSGTGALAIFLRKAMNLDITTSDYNDQEIEDNIAYNSTTNGITPALPHIKHSWGDAFPI 143 (244)
Q Consensus 64 ~l~~~~~~~~~~~~~~~VLdlG~G~G~~~~~~a~~~~~~v~~~D~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 143 (244)
.+.+++..... .+.+|||||||+|..+..++.. +.+|+|+|+|+.|+ +.++++ .++..+..+. +.+++
T Consensus 28 ~l~~~l~~~~~--~~~~vLDvGcGtG~~~~~l~~~-~~~v~gvD~s~~ml-~~a~~~-------~~v~~~~~~~-e~~~~ 95 (257)
T 4hg2_A 28 ALFRWLGEVAP--ARGDALDCGCGSGQASLGLAEF-FERVHAVDPGEAQI-RQALRH-------PRVTYAVAPA-EDTGL 95 (257)
T ss_dssp HHHHHHHHHSS--CSSEEEEESCTTTTTHHHHHTT-CSEEEEEESCHHHH-HTCCCC-------TTEEEEECCT-TCCCC
T ss_pred HHHHHHHHhcC--CCCCEEEEcCCCCHHHHHHHHh-CCEEEEEeCcHHhh-hhhhhc-------CCceeehhhh-hhhcc
Confidence 35566665543 4569999999999999999876 67999999999987 433221 1233333332 45677
Q ss_pred CCCCccEEEEcccccCCcChHHHHHHHHHHHHhcCCCCceEeecc
Q 026036 144 PNPDWDLILASDILLYVKQYSNLIKSLSVLLKSYKPKDSQVGHLT 188 (244)
Q Consensus 144 ~~~~fD~I~~~~~l~~~~~~~~l~~~l~~~~~~lk~gG~~~~~~~ 188 (244)
++++||+|+++.++ ++...+ +++++++|+|||||++++..+
T Consensus 96 ~~~sfD~v~~~~~~-h~~~~~---~~~~e~~rvLkpgG~l~~~~~ 136 (257)
T 4hg2_A 96 PPASVDVAIAAQAM-HWFDLD---RFWAELRRVARPGAVFAAVTY 136 (257)
T ss_dssp CSSCEEEEEECSCC-TTCCHH---HHHHHHHHHEEEEEEEEEEEE
T ss_pred cCCcccEEEEeeeh-hHhhHH---HHHHHHHHHcCCCCEEEEEEC
Confidence 78899999999998 555433 889999999999999988743
|
| >2kw5_A SLR1183 protein; structural genomics, northeast structural genomics consortium (NESG), PSI-2, protein structure initiative, unknown function; NMR {Synechocystis} PDB: 3mer_A | Back alignment and structure |
|---|
Probab=99.65 E-value=3.8e-15 Score=116.22 Aligned_cols=145 Identities=14% Similarity=0.109 Sum_probs=99.0
Q ss_pred cCCeEEEeCCCCcHHHHHHHHhCCCeEEEEeCChHHHHHHHHHhHHhcCCCCCcceEeeecCCCCCCCCCCccEEEEccc
Q 026036 77 ERRRCIELGSGTGALAIFLRKAMNLDITTSDYNDQEIEDNIAYNSTTNGITPALPHIKHSWGDAFPIPNPDWDLILASDI 156 (244)
Q Consensus 77 ~~~~VLdlG~G~G~~~~~~a~~~~~~v~~~D~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fD~I~~~~~ 156 (244)
++ +|||+|||+|..+..++.. +.+|+++|+++.++ +.++++...++. ++..+..+..+ .++.+++||+|+++..
T Consensus 30 ~~-~vLdiGcG~G~~~~~l~~~-~~~v~~vD~s~~~~-~~a~~~~~~~~~--~~~~~~~d~~~-~~~~~~~fD~v~~~~~ 103 (202)
T 2kw5_A 30 QG-KILCLAEGEGRNACFLASL-GYEVTAVDQSSVGL-AKAKQLAQEKGV--KITTVQSNLAD-FDIVADAWEGIVSIFC 103 (202)
T ss_dssp SS-EEEECCCSCTHHHHHHHTT-TCEEEEECSSHHHH-HHHHHHHHHHTC--CEEEECCBTTT-BSCCTTTCSEEEEECC
T ss_pred CC-CEEEECCCCCHhHHHHHhC-CCeEEEEECCHHHH-HHHHHHHHhcCC--ceEEEEcChhh-cCCCcCCccEEEEEhh
Confidence 55 9999999999999999876 67999999999987 777777665543 23333333322 3445678999999643
Q ss_pred ccCCcChHHHHHHHHHHHHhcCCCCceEeecccccCCCCCCCCCCCeEEEeeeeccCccchhhHHHHHhhcCCeEEEecc
Q 026036 157 LLYVKQYSNLIKSLSVLLKSYKPKDSQVGHLTKNEQGEGTEGLPWPAFLMSWRRRIGKEDETIFFTSCENAGLEVKHLGS 236 (244)
Q Consensus 157 l~~~~~~~~l~~~l~~~~~~lk~gG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gf~v~~~~~ 236 (244)
. ....+..+.++++.+.|||||++++.++......... ..+. ..... .+.+++.++++ ||+++.+.+
T Consensus 104 ~---~~~~~~~~~l~~~~~~L~pgG~l~~~~~~~~~~~~~~--~~~~----~~~~~--~~~~~l~~~l~--Gf~v~~~~~ 170 (202)
T 2kw5_A 104 H---LPSSLRQQLYPKVYQGLKPGGVFILEGFAPEQLQYNT--GGPK----DLDLL--PKLETLQSELP--SLNWLIANN 170 (202)
T ss_dssp C---CCHHHHHHHHHHHHTTCCSSEEEEEEEECTTTGGGTS--CCSS----SGGGC--CCHHHHHHHCS--SSCEEEEEE
T ss_pred c---CCHHHHHHHHHHHHHhcCCCcEEEEEEeccccccCCC--CCCC----cceee--cCHHHHHHHhc--CceEEEEEE
Confidence 2 3456777999999999999999998865543321100 0000 00112 23578888888 999998876
Q ss_pred EEEE
Q 026036 237 RVYC 240 (244)
Q Consensus 237 ~~~~ 240 (244)
....
T Consensus 171 ~~~~ 174 (202)
T 2kw5_A 171 LERN 174 (202)
T ss_dssp EEEE
T ss_pred EEee
Confidence 5443
|
| >3ccf_A Cyclopropane-fatty-acyl-phospholipid synthase; YP_321342.1, putative methyltransferase; 1.90A {Anabaena variabilis atcc 29413} | Back alignment and structure |
|---|
Probab=99.65 E-value=1.1e-15 Score=125.38 Aligned_cols=151 Identities=14% Similarity=0.089 Sum_probs=98.2
Q ss_pred cccCCeEEEeCCCCcHHHHHHHHhCCCeEEEEeCChHHHHHHHHHhHHhcCCCCCcceEeeecCCCCCCCCCCccEEEEc
Q 026036 75 WIERRRCIELGSGTGALAIFLRKAMNLDITTSDYNDQEIEDNIAYNSTTNGITPALPHIKHSWGDAFPIPNPDWDLILAS 154 (244)
Q Consensus 75 ~~~~~~VLdlG~G~G~~~~~~a~~~~~~v~~~D~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fD~I~~~ 154 (244)
..++.+|||||||+|.++..++. .+.+|+++|+|+.++ +.++++. .++..+..+..+ ++. +++||+|+++
T Consensus 55 ~~~~~~vLDiGcG~G~~~~~l~~-~~~~v~gvD~s~~~~-~~a~~~~------~~~~~~~~d~~~-~~~-~~~fD~v~~~ 124 (279)
T 3ccf_A 55 PQPGEFILDLGCGTGQLTEKIAQ-SGAEVLGTDNAATMI-EKARQNY------PHLHFDVADARN-FRV-DKPLDAVFSN 124 (279)
T ss_dssp CCTTCEEEEETCTTSHHHHHHHH-TTCEEEEEESCHHHH-HHHHHHC------TTSCEEECCTTT-CCC-SSCEEEEEEE
T ss_pred CCCCCEEEEecCCCCHHHHHHHh-CCCeEEEEECCHHHH-HHHHhhC------CCCEEEECChhh-CCc-CCCcCEEEEc
Confidence 45778999999999999999987 578999999999987 6666553 123344444433 343 4689999999
Q ss_pred ccccCCcChHHHHHHHHHHHHhcCCCCceEeecccccCCCC---CC---CCCCCeEEEeeeeccCccchhhHHHHHhhcC
Q 026036 155 DILLYVKQYSNLIKSLSVLLKSYKPKDSQVGHLTKNEQGEG---TE---GLPWPAFLMSWRRRIGKEDETIFFTSCENAG 228 (244)
Q Consensus 155 ~~l~~~~~~~~l~~~l~~~~~~lk~gG~~~~~~~~~~~~~~---~~---~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~G 228 (244)
.++++.. +....++++.++|||||++++.++....... .+ ..................+...+.++++++|
T Consensus 125 ~~l~~~~---d~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aG 201 (279)
T 3ccf_A 125 AMLHWVK---EPEAAIASIHQALKSGGRFVAEFGGKGNIKYILEALYNALETLGIHNPQALNPWYFPSIGEYVNILEKQG 201 (279)
T ss_dssp SCGGGCS---CHHHHHHHHHHHEEEEEEEEEEEECTTTTHHHHHHHHHHHHHHTCCCGGGGCCCCCCCHHHHHHHHHHHT
T ss_pred chhhhCc---CHHHHHHHHHHhcCCCcEEEEEecCCcchHHHHHHHHHHHHhcCCccccCcCceeCCCHHHHHHHHHHcC
Confidence 9984433 4458999999999999999987554322100 00 0000000000000001123578899999999
Q ss_pred CeEEEeccEE
Q 026036 229 LEVKHLGSRV 238 (244)
Q Consensus 229 f~v~~~~~~~ 238 (244)
|+++.+....
T Consensus 202 f~~~~~~~~~ 211 (279)
T 3ccf_A 202 FDVTYAALFN 211 (279)
T ss_dssp EEEEEEEEEE
T ss_pred CEEEEEEEec
Confidence 9998776433
|
| >2esr_A Methyltransferase; structural genomics, hypothetical protein, streptococcus PYO PSI, protein structure initiative; HET: GLC; 1.80A {Streptococcus pyogenes} SCOP: c.66.1.46 | Back alignment and structure |
|---|
Probab=99.65 E-value=4.9e-17 Score=124.45 Aligned_cols=129 Identities=14% Similarity=0.101 Sum_probs=85.7
Q ss_pred ceeechHHHHHHHHhhccC-cccCCeEEEeCCCCcHHHHHHHHhCCCeEEEEeCChHHHHHHHHHhHHhcCCCCCcceEe
Q 026036 56 NFLWPGTFSFAEWLMHHRE-WIERRRCIELGSGTGALAIFLRKAMNLDITTSDYNDQEIEDNIAYNSTTNGITPALPHIK 134 (244)
Q Consensus 56 ~~~w~~~~~l~~~~~~~~~-~~~~~~VLdlG~G~G~~~~~~a~~~~~~v~~~D~~~~~l~~~~~~~~~~~~~~~~~~~~~ 134 (244)
....|....+.+.+..... ..++.+|||+|||+|.+++.+++.+..+|+++|+++.++ +.++++...+++..++..+.
T Consensus 9 ~~~rp~~~~~~~~~~~~l~~~~~~~~vLDlGcG~G~~~~~l~~~~~~~v~~vD~~~~~~-~~a~~~~~~~~~~~~~~~~~ 87 (177)
T 2esr_A 9 KITRPTSDKVRGAIFNMIGPYFNGGRVLDLFAGSGGLAIEAVSRGMSAAVLVEKNRKAQ-AIIQDNIIMTKAENRFTLLK 87 (177)
T ss_dssp ---------CHHHHHHHHCSCCCSCEEEEETCTTCHHHHHHHHTTCCEEEEECCCHHHH-HHHHHHHHTTTCGGGEEEEC
T ss_pred CCCCcCHHHHHHHHHHHHHhhcCCCeEEEeCCCCCHHHHHHHHcCCCEEEEEECCHHHH-HHHHHHHHHcCCCCceEEEE
Confidence 4455566666666655443 457889999999999999999887567999999999987 88888888777643444443
Q ss_pred eecCCCCCCCCCCccEEEEcccccCCcChHHHHHHHHHHH--HhcCCCCceEeeccc
Q 026036 135 HSWGDAFPIPNPDWDLILASDILLYVKQYSNLIKSLSVLL--KSYKPKDSQVGHLTK 189 (244)
Q Consensus 135 ~~~~~~~~~~~~~fD~I~~~~~l~~~~~~~~l~~~l~~~~--~~lk~gG~~~~~~~~ 189 (244)
.++.+.++...++||+|+++.++ .. ....+.++.+. +.|+|||.+++.+..
T Consensus 88 ~d~~~~~~~~~~~fD~i~~~~~~-~~---~~~~~~~~~l~~~~~L~~gG~l~~~~~~ 140 (177)
T 2esr_A 88 MEAERAIDCLTGRFDLVFLDPPY-AK---ETIVATIEALAAKNLLSEQVMVVCETDK 140 (177)
T ss_dssp SCHHHHHHHBCSCEEEEEECCSS-HH---HHHHHHHHHHHHTTCEEEEEEEEEEEET
T ss_pred CcHHHhHHhhcCCCCEEEECCCC-Cc---chHHHHHHHHHhCCCcCCCcEEEEEECC
Confidence 33322222234579999997764 32 23346666666 999999998887443
|
| >3m70_A Tellurite resistance protein TEHB homolog; structural genomics, PSI-2, protein ST initiative; 1.95A {Haemophilus influenzae} | Back alignment and structure |
|---|
Probab=99.65 E-value=3.8e-15 Score=122.54 Aligned_cols=106 Identities=14% Similarity=0.239 Sum_probs=84.1
Q ss_pred ccCCeEEEeCCCCcHHHHHHHHhCCCeEEEEeCChHHHHHHHHHhHHhcCCCCCcceEeeecCCCCCCCCCCccEEEEcc
Q 026036 76 IERRRCIELGSGTGALAIFLRKAMNLDITTSDYNDQEIEDNIAYNSTTNGITPALPHIKHSWGDAFPIPNPDWDLILASD 155 (244)
Q Consensus 76 ~~~~~VLdlG~G~G~~~~~~a~~~~~~v~~~D~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fD~I~~~~ 155 (244)
.++.+|||+|||+|.++..++.. +.+|+++|+++.++ +.++++...++. ++..+..+..+. +. .++||+|+++.
T Consensus 119 ~~~~~vLD~GcG~G~~~~~l~~~-g~~v~~vD~s~~~~-~~a~~~~~~~~~--~~~~~~~d~~~~-~~-~~~fD~i~~~~ 192 (286)
T 3m70_A 119 ISPCKVLDLGCGQGRNSLYLSLL-GYDVTSWDHNENSI-AFLNETKEKENL--NISTALYDINAA-NI-QENYDFIVSTV 192 (286)
T ss_dssp SCSCEEEEESCTTCHHHHHHHHT-TCEEEEEESCHHHH-HHHHHHHHHTTC--CEEEEECCGGGC-CC-CSCEEEEEECS
T ss_pred cCCCcEEEECCCCCHHHHHHHHC-CCeEEEEECCHHHH-HHHHHHHHHcCC--ceEEEEeccccc-cc-cCCccEEEEcc
Confidence 37789999999999999999887 67999999999987 888888877765 334444443322 22 67899999999
Q ss_pred cccCCcChHHHHHHHHHHHHhcCCCCceEeecc
Q 026036 156 ILLYVKQYSNLIKSLSVLLKSYKPKDSQVGHLT 188 (244)
Q Consensus 156 ~l~~~~~~~~l~~~l~~~~~~lk~gG~~~~~~~ 188 (244)
++ ++...+.+...++++.+.|+|||.+++...
T Consensus 193 ~~-~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~ 224 (286)
T 3m70_A 193 VF-MFLNRERVPSIIKNMKEHTNVGGYNLIVAA 224 (286)
T ss_dssp SG-GGSCGGGHHHHHHHHHHTEEEEEEEEEEEE
T ss_pred ch-hhCCHHHHHHHHHHHHHhcCCCcEEEEEEe
Confidence 98 555567778999999999999999877643
|
| >2p35_A Trans-aconitate 2-methyltransferase; SAM dependent methyltrans agrobacterium tumefaciens, structural genomics, PSI-2; HET: SAH; 1.95A {Agrobacterium tumefaciens str} | Back alignment and structure |
|---|
Probab=99.65 E-value=3.3e-15 Score=120.88 Aligned_cols=153 Identities=18% Similarity=0.235 Sum_probs=99.8
Q ss_pred HhhccCcccCCeEEEeCCCCcHHHHHHHHhC-CCeEEEEeCChHHHHHHHHHhHHhcCCCCCcceEeeecCCCCCCCCCC
Q 026036 69 LMHHREWIERRRCIELGSGTGALAIFLRKAM-NLDITTSDYNDQEIEDNIAYNSTTNGITPALPHIKHSWGDAFPIPNPD 147 (244)
Q Consensus 69 ~~~~~~~~~~~~VLdlG~G~G~~~~~~a~~~-~~~v~~~D~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 147 (244)
+.......++.+|||+|||+|.++..++... +.+|+++|+++.++ +.++++. .++..+..+..+ ++ .+++
T Consensus 25 l~~~~~~~~~~~vLdiG~G~G~~~~~l~~~~~~~~v~~~D~s~~~~-~~a~~~~------~~~~~~~~d~~~-~~-~~~~ 95 (259)
T 2p35_A 25 LLAQVPLERVLNGYDLGCGPGNSTELLTDRYGVNVITGIDSDDDML-EKAADRL------PNTNFGKADLAT-WK-PAQK 95 (259)
T ss_dssp HHTTCCCSCCSSEEEETCTTTHHHHHHHHHHCTTSEEEEESCHHHH-HHHHHHS------TTSEEEECCTTT-CC-CSSC
T ss_pred HHHhcCCCCCCEEEEecCcCCHHHHHHHHhCCCCEEEEEECCHHHH-HHHHHhC------CCcEEEECChhh-cC-ccCC
Confidence 4444445677899999999999999998775 67899999999987 6666551 123344444433 33 4668
Q ss_pred ccEEEEcccccCCcChHHHHHHHHHHHHhcCCCCceEeecccccCCC-----CCCC--CCCCeEEE---eeeeccCccch
Q 026036 148 WDLILASDILLYVKQYSNLIKSLSVLLKSYKPKDSQVGHLTKNEQGE-----GTEG--LPWPAFLM---SWRRRIGKEDE 217 (244)
Q Consensus 148 fD~I~~~~~l~~~~~~~~l~~~l~~~~~~lk~gG~~~~~~~~~~~~~-----~~~~--~~~~~~~~---~~~~~~~~~~~ 217 (244)
||+|+++.++++. ++....++++.++|||||++++.++...... .... ..+..... ...... .+.
T Consensus 96 fD~v~~~~~l~~~---~~~~~~l~~~~~~L~pgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~ 170 (259)
T 2p35_A 96 ADLLYANAVFQWV---PDHLAVLSQLMDQLESGGVLAVQMPDNLQEPTHIAMHETADGGPWKDAFSGGGLRRKPL--PPP 170 (259)
T ss_dssp EEEEEEESCGGGS---TTHHHHHHHHGGGEEEEEEEEEEEECCTTSHHHHHHHHHHHHSTTGGGC-------CCC--CCH
T ss_pred cCEEEEeCchhhC---CCHHHHHHHHHHhcCCCeEEEEEeCCCCCcHHHHHHHHHhcCcchHHHhccccccccCC--CCH
Confidence 9999999999443 3455999999999999999998864332110 0000 00000000 011122 235
Q ss_pred hhHHHHHhhcCCeEEEec
Q 026036 218 TIFFTSCENAGLEVKHLG 235 (244)
Q Consensus 218 ~~~~~~l~~~Gf~v~~~~ 235 (244)
+.+.++++++||+++...
T Consensus 171 ~~~~~~l~~aGf~v~~~~ 188 (259)
T 2p35_A 171 SDYFNALSPKSSRVDVWH 188 (259)
T ss_dssp HHHHHHHGGGEEEEEEEE
T ss_pred HHHHHHHHhcCCceEEEE
Confidence 789999999999865443
|
| >2frn_A Hypothetical protein PH0793; structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; 2.10A {Pyrococcus horikoshii OT3} PDB: 3k6r_A 3a25_A* 3a26_A* | Back alignment and structure |
|---|
Probab=99.64 E-value=2.3e-15 Score=123.58 Aligned_cols=133 Identities=14% Similarity=0.072 Sum_probs=96.9
Q ss_pred ccCCeEEEeCCCCcHHHHHHHHhCCCeEEEEeCChHHHHHHHHHhHHhcCCCCCcceEeeecCCCCCCCCCCccEEEEcc
Q 026036 76 IERRRCIELGSGTGALAIFLRKAMNLDITTSDYNDQEIEDNIAYNSTTNGITPALPHIKHSWGDAFPIPNPDWDLILASD 155 (244)
Q Consensus 76 ~~~~~VLdlG~G~G~~~~~~a~~~~~~v~~~D~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fD~I~~~~ 155 (244)
.++.+|||+|||+|.+++.+++.+..+|+++|+|+.++ +.+++|+..|++.+++..+..+..+... .++||+|+++.
T Consensus 124 ~~~~~VLDlgcG~G~~~~~la~~~~~~V~~vD~s~~~~-~~a~~n~~~n~~~~~v~~~~~D~~~~~~--~~~fD~Vi~~~ 200 (278)
T 2frn_A 124 KPDELVVDMFAGIGHLSLPIAVYGKAKVIAIEKDPYTF-KFLVENIHLNKVEDRMSAYNMDNRDFPG--ENIADRILMGY 200 (278)
T ss_dssp CTTCEEEETTCTTTTTHHHHHHHTCCEEEEECCCHHHH-HHHHHHHHHTTCTTTEEEECSCTTTCCC--CSCEEEEEECC
T ss_pred CCCCEEEEecccCCHHHHHHHHhCCCEEEEEECCHHHH-HHHHHHHHHcCCCceEEEEECCHHHhcc--cCCccEEEECC
Confidence 36889999999999999999988655899999999997 8999999999886555555444433322 56899999965
Q ss_pred cccCCcChHHHHHHHHHHHHhcCCCCceEeecccccCCCCCCCCCCCeEEEeeeeccCccchhhHHHHHhhcCCeEEEec
Q 026036 156 ILLYVKQYSNLIKSLSVLLKSYKPKDSQVGHLTKNEQGEGTEGLPWPAFLMSWRRRIGKEDETIFFTSCENAGLEVKHLG 235 (244)
Q Consensus 156 ~l~~~~~~~~l~~~l~~~~~~lk~gG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gf~v~~~~ 235 (244)
+. . . .+.+.++.+.|||||.+++...... ........+.+.+.++++|+++..+.
T Consensus 201 p~-~---~---~~~l~~~~~~LkpgG~l~~~~~~~~------------------~~~~~~~~~~i~~~~~~~G~~~~~~~ 255 (278)
T 2frn_A 201 VV-R---T---HEFIPKALSIAKDGAIIHYHNTVPE------------------KLMPREPFETFKRITKEYGYDVEKLN 255 (278)
T ss_dssp CS-S---G---GGGHHHHHHHEEEEEEEEEEEEEEG------------------GGTTTTTHHHHHHHHHHTTCEEEEEE
T ss_pred ch-h---H---HHHHHHHHHHCCCCeEEEEEEeecc------------------ccccccHHHHHHHHHHHcCCeeEEee
Confidence 52 2 1 2677789999999998877622211 01111224677888999999988744
Q ss_pred c
Q 026036 236 S 236 (244)
Q Consensus 236 ~ 236 (244)
.
T Consensus 256 ~ 256 (278)
T 2frn_A 256 E 256 (278)
T ss_dssp E
T ss_pred e
Confidence 3
|
| >1l3i_A Precorrin-6Y methyltransferase/putative decarboxylase; structural genomics, beta barrel, rossmann fold, tetramer; HET: SAH; 1.95A {Methanothermobacterthermautotrophicus} SCOP: c.66.1.22 PDB: 1kxz_A 1l3b_A 1f38_A 1l3c_A* | Back alignment and structure |
|---|
Probab=99.64 E-value=1.3e-15 Score=117.47 Aligned_cols=142 Identities=17% Similarity=0.200 Sum_probs=102.9
Q ss_pred chHHHHHHHHhhccCcccCCeEEEeCCCCcHHHHHHHHhCCCeEEEEeCChHHHHHHHHHhHHhcCCCCCcceEeeecCC
Q 026036 60 PGTFSFAEWLMHHREWIERRRCIELGSGTGALAIFLRKAMNLDITTSDYNDQEIEDNIAYNSTTNGITPALPHIKHSWGD 139 (244)
Q Consensus 60 ~~~~~l~~~~~~~~~~~~~~~VLdlG~G~G~~~~~~a~~~~~~v~~~D~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 139 (244)
+....+..++.......++.+|||+|||+|.++..+++.+ .+|+++|+++.++ +.++++...++...++..+..+..+
T Consensus 16 ~~~~~~~~~~~~~~~~~~~~~vldiG~G~G~~~~~l~~~~-~~v~~~D~~~~~~-~~a~~~~~~~~~~~~~~~~~~d~~~ 93 (192)
T 1l3i_A 16 PTAMEVRCLIMCLAEPGKNDVAVDVGCGTGGVTLELAGRV-RRVYAIDRNPEAI-STTEMNLQRHGLGDNVTLMEGDAPE 93 (192)
T ss_dssp CCCHHHHHHHHHHHCCCTTCEEEEESCTTSHHHHHHHTTS-SEEEEEESCHHHH-HHHHHHHHHTTCCTTEEEEESCHHH
T ss_pred CChHHHHHHHHHhcCCCCCCEEEEECCCCCHHHHHHHHhc-CEEEEEECCHHHH-HHHHHHHHHcCCCcceEEEecCHHH
Confidence 3455566666666666788999999999999999998875 8999999999987 8888888777664444444443332
Q ss_pred CCCCCCCCccEEEEcccccCCcChHHHHHHHHHHHHhcCCCCceEeecccccCCCCCCCCCCCeEEEeeeeccCccchhh
Q 026036 140 AFPIPNPDWDLILASDILLYVKQYSNLIKSLSVLLKSYKPKDSQVGHLTKNEQGEGTEGLPWPAFLMSWRRRIGKEDETI 219 (244)
Q Consensus 140 ~~~~~~~~fD~I~~~~~l~~~~~~~~l~~~l~~~~~~lk~gG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 219 (244)
.++. .++||+|++..++ + .+...++.+.+.|+|||++++..... .....
T Consensus 94 ~~~~-~~~~D~v~~~~~~-~-----~~~~~l~~~~~~l~~gG~l~~~~~~~------------------------~~~~~ 142 (192)
T 1l3i_A 94 ALCK-IPDIDIAVVGGSG-G-----ELQEILRIIKDKLKPGGRIIVTAILL------------------------ETKFE 142 (192)
T ss_dssp HHTT-SCCEEEEEESCCT-T-----CHHHHHHHHHHTEEEEEEEEEEECBH------------------------HHHHH
T ss_pred hccc-CCCCCEEEECCch-H-----HHHHHHHHHHHhcCCCcEEEEEecCc------------------------chHHH
Confidence 1121 1479999998776 2 23588999999999999887752111 12367
Q ss_pred HHHHHhhcCCeEEEe
Q 026036 220 FFTSCENAGLEVKHL 234 (244)
Q Consensus 220 ~~~~l~~~Gf~v~~~ 234 (244)
+.+.+++.||+++.+
T Consensus 143 ~~~~l~~~g~~~~~~ 157 (192)
T 1l3i_A 143 AMECLRDLGFDVNIT 157 (192)
T ss_dssp HHHHHHHTTCCCEEE
T ss_pred HHHHHHHCCCceEEE
Confidence 788899999966544
|
| >2g72_A Phenylethanolamine N-methyltransferase; HET: SAM F21; 2.00A {Homo sapiens} SCOP: c.66.1.15 PDB: 1yz3_A* 2an4_A* 2an5_A* 2g70_A* 2g71_A* 2an3_A* 2g8n_A* 2ony_A* 3hcb_A* 3hcc_A* 3hcd_A* 3hcf_A* 3kpj_A* 3kpu_A* 3kpv_A* 3kpw_A* 3kpy_A* 3kqm_A* 3kqo_A* 3kqp_A* ... | Back alignment and structure |
|---|
Probab=99.64 E-value=7.8e-16 Score=126.95 Aligned_cols=148 Identities=14% Similarity=0.112 Sum_probs=93.5
Q ss_pred ccCCeEEEeCCCCcHHHHHHHHhCCCeEEEEeCChHHHHHHHHHhHHhcCC--------------CC-------------
Q 026036 76 IERRRCIELGSGTGALAIFLRKAMNLDITTSDYNDQEIEDNIAYNSTTNGI--------------TP------------- 128 (244)
Q Consensus 76 ~~~~~VLdlG~G~G~~~~~~a~~~~~~v~~~D~~~~~l~~~~~~~~~~~~~--------------~~------------- 128 (244)
.++.+|||||||+|.....++...+.+|+|+|+|+.|+ +.+++++..... ..
T Consensus 70 ~~~~~vLDiGcG~G~~~~l~~~~~~~~v~gvD~s~~~l-~~a~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~ 148 (289)
T 2g72_A 70 VSGRTLIDIGSGPTVYQLLSACSHFEDITMTDFLEVNR-QELGRWLQEEPGAFNWSMYSQHACLIEGKGECWQDKERQLR 148 (289)
T ss_dssp SCCSEEEEETCTTCCGGGTTGGGGCSEEEEECSCHHHH-HHHHHHHTTCTTCCCCHHHHHHHHHHHCSCCCHHHHHHHHH
T ss_pred CCCCeEEEECCCcChHHHHhhccCCCeEEEeCCCHHHH-HHHHHHHhhCcccccchhhhhHHHHhcCcccchhhhHHHHH
Confidence 36789999999999965555444477999999999997 666654332100 00
Q ss_pred --CcceEeeecCCCCC-----CCCCCccEEEEcccccCCc-ChHHHHHHHHHHHHhcCCCCceEeecccccCCCCCCCCC
Q 026036 129 --ALPHIKHSWGDAFP-----IPNPDWDLILASDILLYVK-QYSNLIKSLSVLLKSYKPKDSQVGHLTKNEQGEGTEGLP 200 (244)
Q Consensus 129 --~~~~~~~~~~~~~~-----~~~~~fD~I~~~~~l~~~~-~~~~l~~~l~~~~~~lk~gG~~~~~~~~~~~~~~~~~~~ 200 (244)
.+..+..+..+.++ +.+++||+|+++.++++.. ..++..++++++.++|||||++++.......
T Consensus 149 ~~~~~~~~~D~~~~~~~~~~~~~~~~fD~V~~~~~l~~~~~~~~~~~~~l~~~~r~LkpGG~l~~~~~~~~~-------- 220 (289)
T 2g72_A 149 ARVKRVLPIDVHQPQPLGAGSPAPLPADALVSAFCLEAVSPDLASFQRALDHITTLLRPGGHLLLIGALEES-------- 220 (289)
T ss_dssp HHEEEEECCCTTSSSTTCSSCSSCSSEEEEEEESCHHHHCSSHHHHHHHHHHHHTTEEEEEEEEEEEEESCC--------
T ss_pred hhhceEEecccCCCCCccccccCCCCCCEEEehhhhhhhcCCHHHHHHHHHHHHHhcCCCCEEEEEEecCcc--------
Confidence 00112223333222 2345699999999983311 1457779999999999999999887311100
Q ss_pred CCeEEEe---eeeccCccchhhHHHHHhhcCCeEEEecc
Q 026036 201 WPAFLMS---WRRRIGKEDETIFFTSCENAGLEVKHLGS 236 (244)
Q Consensus 201 ~~~~~~~---~~~~~~~~~~~~~~~~l~~~Gf~v~~~~~ 236 (244)
.+... +..+. .+.+++.++++++||+++.+..
T Consensus 221 --~~~~~~~~~~~~~--~~~~~l~~~l~~aGf~~~~~~~ 255 (289)
T 2g72_A 221 --WYLAGEARLTVVP--VSEEEVREALVRSGYKVRDLRT 255 (289)
T ss_dssp --EEEETTEEEECCC--CCHHHHHHHHHHTTEEEEEEEE
T ss_pred --eEEcCCeeeeecc--CCHHHHHHHHHHcCCeEEEeeE
Confidence 00000 11112 2357899999999999887653
|
| >2ozv_A Hypothetical protein ATU0636; structural genomics, predicted transferase, predicted O-methyltransferase, PFAM PF05175; HET: MSE; 1.70A {Agrobacterium tumefaciens str} | Back alignment and structure |
|---|
Probab=99.64 E-value=1.8e-15 Score=123.08 Aligned_cols=121 Identities=7% Similarity=0.036 Sum_probs=89.6
Q ss_pred hHHHHHHHHhhccCcccCCeEEEeCCCCcHHHHHHHHhC-CCeEEEEeCChHHHHHHHHHhHHh---cCCCCCcceEeee
Q 026036 61 GTFSFAEWLMHHREWIERRRCIELGSGTGALAIFLRKAM-NLDITTSDYNDQEIEDNIAYNSTT---NGITPALPHIKHS 136 (244)
Q Consensus 61 ~~~~l~~~~~~~~~~~~~~~VLdlG~G~G~~~~~~a~~~-~~~v~~~D~~~~~l~~~~~~~~~~---~~~~~~~~~~~~~ 136 (244)
.+..|+.++ ...++.+|||+|||+|.+++.++... ..+|+++|+++.++ +.+++|+.. +++..++..+..+
T Consensus 24 D~~lL~~~~----~~~~~~~VLDlG~G~G~~~l~la~~~~~~~v~gvDi~~~~~-~~a~~n~~~~~~~~l~~~v~~~~~D 98 (260)
T 2ozv_A 24 DAMLLASLV----ADDRACRIADLGAGAGAAGMAVAARLEKAEVTLYERSQEMA-EFARRSLELPDNAAFSARIEVLEAD 98 (260)
T ss_dssp HHHHHHHTC----CCCSCEEEEECCSSSSHHHHHHHHHCTTEEEEEEESSHHHH-HHHHHHTTSGGGTTTGGGEEEEECC
T ss_pred HHHHHHHHh----cccCCCEEEEeCChHhHHHHHHHHhCCCCeEEEEECCHHHH-HHHHHHHHhhhhCCCcceEEEEeCC
Confidence 666677664 34467799999999999999999886 57899999999987 889999887 7775455555555
Q ss_pred cCCCC------CCCCCCccEEEEcccccCCc---------------ChHHHHHHHHHHHHhcCCCCceEee
Q 026036 137 WGDAF------PIPNPDWDLILASDILLYVK---------------QYSNLIKSLSVLLKSYKPKDSQVGH 186 (244)
Q Consensus 137 ~~~~~------~~~~~~fD~I~~~~~l~~~~---------------~~~~l~~~l~~~~~~lk~gG~~~~~ 186 (244)
..+.. .+..++||+|+++.+++... ....+...++.+.++|||||++++.
T Consensus 99 ~~~~~~~~~~~~~~~~~fD~Vv~nPPy~~~~~~~~~~~~~~~a~~~~~~~~~~~l~~~~~~LkpgG~l~~~ 169 (260)
T 2ozv_A 99 VTLRAKARVEAGLPDEHFHHVIMNPPYNDAGDRRTPDALKAEAHAMTEGLFEDWIRTASAIMVSGGQLSLI 169 (260)
T ss_dssp TTCCHHHHHHTTCCTTCEEEEEECCCC---------------------CCHHHHHHHHHHHEEEEEEEEEE
T ss_pred HHHHhhhhhhhccCCCCcCEEEECCCCcCCCCCCCcCHHHHHHhhcCcCCHHHHHHHHHHHcCCCCEEEEE
Confidence 54431 13456899999997764321 1123568899999999999998875
|
| >3dmg_A Probable ribosomal RNA small subunit methyltransf; monomethyltranserase, 16S rRNA methyltransferase, N2 G1207 methyltransferase; HET: SAH; 1.55A {Thermus thermophilus} PDB: 3dmf_A* 3dmh_A* 2zul_A* 2zwv_A* | Back alignment and structure |
|---|
Probab=99.64 E-value=4.3e-15 Score=126.97 Aligned_cols=145 Identities=14% Similarity=0.143 Sum_probs=102.9
Q ss_pred cccCCceEEEEecccCCCCcceeechHHHHHHHHhhcc--CcccCCeEEEeCCCCcHHHHHHHHhCCCeEEEEeCChHHH
Q 026036 36 HQFPEMELVIREFAFHQLNANFLWPGTFSFAEWLMHHR--EWIERRRCIELGSGTGALAIFLRKAMNLDITTSDYNDQEI 113 (244)
Q Consensus 36 ~~~~~~~~~~~~~~~~~~~~~~~w~~~~~l~~~~~~~~--~~~~~~~VLdlG~G~G~~~~~~a~~~~~~v~~~D~~~~~l 113 (244)
..+.+..+.+........ ...+.+.+..+.+.+.... ...++.+|||+|||+|.+++.+++. +.+|+++|+++.++
T Consensus 191 ~~~~g~~~~~~~~pgvFs-~~~~d~~t~~ll~~l~~~l~~~~~~~~~VLDlGcG~G~~~~~la~~-g~~V~gvDis~~al 268 (381)
T 3dmg_A 191 ARILGAEYTFHHLPGVFS-AGKVDPASLLLLEALQERLGPEGVRGRQVLDLGAGYGALTLPLARM-GAEVVGVEDDLASV 268 (381)
T ss_dssp EEETTEEEEEEECTTCTT-TTSCCHHHHHHHHHHHHHHCTTTTTTCEEEEETCTTSTTHHHHHHT-TCEEEEEESBHHHH
T ss_pred EEecCceEEEEeCCCcee-CCCCCHHHHHHHHHHHHhhcccCCCCCEEEEEeeeCCHHHHHHHHc-CCEEEEEECCHHHH
Confidence 334555566655432111 2335567888888876543 2346789999999999999999887 67999999999987
Q ss_pred HHHHHHhHHhcCCCCCcceEeeecCCCCCCCCCCccEEEEcccccCC--cChHHHHHHHHHHHHhcCCCCceEee
Q 026036 114 EDNIAYNSTTNGITPALPHIKHSWGDAFPIPNPDWDLILASDILLYV--KQYSNLIKSLSVLLKSYKPKDSQVGH 186 (244)
Q Consensus 114 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fD~I~~~~~l~~~--~~~~~l~~~l~~~~~~lk~gG~~~~~ 186 (244)
+.+++|...+++. +..+..+..+. ....++||+|+++.++++. ........+++++.+.|||||+++++
T Consensus 269 -~~A~~n~~~~~~~--v~~~~~D~~~~-~~~~~~fD~Ii~npp~~~~~~~~~~~~~~~l~~~~~~LkpGG~l~iv 339 (381)
T 3dmg_A 269 -LSLQKGLEANALK--AQALHSDVDEA-LTEEARFDIIVTNPPFHVGGAVILDVAQAFVNVAAARLRPGGVFFLV 339 (381)
T ss_dssp -HHHHHHHHHTTCC--CEEEECSTTTT-SCTTCCEEEEEECCCCCTTCSSCCHHHHHHHHHHHHHEEEEEEEEEE
T ss_pred -HHHHHHHHHcCCC--eEEEEcchhhc-cccCCCeEEEEECCchhhcccccHHHHHHHHHHHHHhcCcCcEEEEE
Confidence 8899999888763 33333333222 2234689999999887331 22456678999999999999998886
|
| >2ift_A Putative methylase HI0767; NESG, Y767_haein, structural genomics, PSI-2, protein structure initiative; 2.30A {Haemophilus influenzae} SCOP: c.66.1.46 | Back alignment and structure |
|---|
Probab=99.64 E-value=6.1e-16 Score=121.06 Aligned_cols=126 Identities=17% Similarity=0.127 Sum_probs=84.2
Q ss_pred echHHHHHHHHhhccCc-ccCCeEEEeCCCCcHHHHHHHHhCCCeEEEEeCChHHHHHHHHHhHHhcCCC-CCcceEeee
Q 026036 59 WPGTFSFAEWLMHHREW-IERRRCIELGSGTGALAIFLRKAMNLDITTSDYNDQEIEDNIAYNSTTNGIT-PALPHIKHS 136 (244)
Q Consensus 59 w~~~~~l~~~~~~~~~~-~~~~~VLdlG~G~G~~~~~~a~~~~~~v~~~D~~~~~l~~~~~~~~~~~~~~-~~~~~~~~~ 136 (244)
.|....+.+.+...... .++.+|||+|||+|.+++.++..+..+|+++|+|+.++ +.+++|+..+++. .++..+..+
T Consensus 34 rp~~~~~~~~l~~~l~~~~~~~~vLDlGcGtG~~~~~~~~~~~~~v~gvD~s~~~l-~~a~~~~~~~~~~~~~v~~~~~d 112 (201)
T 2ift_A 34 RPTGDRVKETLFNWLMPYIHQSECLDGFAGSGSLGFEALSRQAKKVTFLELDKTVA-NQLKKNLQTLKCSSEQAEVINQS 112 (201)
T ss_dssp ----CHHHHHHHHHHHHHHTTCEEEETTCTTCHHHHHHHHTTCSEEEEECSCHHHH-HHHHHHHHHTTCCTTTEEEECSC
T ss_pred CcCHHHHHHHHHHHHHHhcCCCeEEEcCCccCHHHHHHHHccCCEEEEEECCHHHH-HHHHHHHHHhCCCccceEEEECC
Confidence 34444444444333222 36789999999999999987777667999999999997 8899998887763 334444333
Q ss_pred cCCCCCC-CCCC-ccEEEEcccccCCcChHHHHHHHHHH--HHhcCCCCceEeeccc
Q 026036 137 WGDAFPI-PNPD-WDLILASDILLYVKQYSNLIKSLSVL--LKSYKPKDSQVGHLTK 189 (244)
Q Consensus 137 ~~~~~~~-~~~~-fD~I~~~~~l~~~~~~~~l~~~l~~~--~~~lk~gG~~~~~~~~ 189 (244)
..+..+. ..++ ||+|+++.++ .. ....+.++.+ .++|+|||.+++....
T Consensus 113 ~~~~~~~~~~~~~fD~I~~~~~~-~~---~~~~~~l~~~~~~~~LkpgG~l~i~~~~ 165 (201)
T 2ift_A 113 SLDFLKQPQNQPHFDVVFLDPPF-HF---NLAEQAISLLCENNWLKPNALIYVETEK 165 (201)
T ss_dssp HHHHTTSCCSSCCEEEEEECCCS-SS---CHHHHHHHHHHHTTCEEEEEEEEEEEES
T ss_pred HHHHHHhhccCCCCCEEEECCCC-CC---ccHHHHHHHHHhcCccCCCcEEEEEECC
Confidence 3222222 2467 9999998774 43 3344777777 5679999998887433
|
| >3orh_A Guanidinoacetate N-methyltransferase; structura genomics, structural genomics consortium, SGC; HET: SAH; 1.86A {Homo sapiens} PDB: 1xcj_A* 1xcl_A* 1p1c_A* 1p1b_A* 1khh_A* | Back alignment and structure |
|---|
Probab=99.64 E-value=3.5e-17 Score=131.31 Aligned_cols=108 Identities=16% Similarity=0.097 Sum_probs=78.5
Q ss_pred ccCCeEEEeCCCCcHHHHHHHHhCCCeEEEEeCChHHHHHHHHHhHHhcCCCCCcceEeeecCCC-CCCCCCCccEEEEc
Q 026036 76 IERRRCIELGSGTGALAIFLRKAMNLDITTSDYNDQEIEDNIAYNSTTNGITPALPHIKHSWGDA-FPIPNPDWDLILAS 154 (244)
Q Consensus 76 ~~~~~VLdlG~G~G~~~~~~a~~~~~~v~~~D~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~fD~I~~~ 154 (244)
.+|.+|||||||+|..+..+++....+|+++|+++.++ +.++++....+. .+..+..++.+. .++.+++||.|+.-
T Consensus 59 ~~G~rVLdiG~G~G~~~~~~~~~~~~~v~~id~~~~~~-~~a~~~~~~~~~--~~~~~~~~a~~~~~~~~~~~FD~i~~D 135 (236)
T 3orh_A 59 SKGGRVLEVGFGMAIAASKVQEAPIDEHWIIECNDGVF-QRLRDWAPRQTH--KVIPLKGLWEDVAPTLPDGHFDGILYD 135 (236)
T ss_dssp TTCEEEEEECCTTSHHHHHHTTSCEEEEEEEECCHHHH-HHHHHHGGGCSS--EEEEEESCHHHHGGGSCTTCEEEEEEC
T ss_pred cCCCeEEEECCCccHHHHHHHHhCCcEEEEEeCCHHHH-HHHHHHHhhCCC--ceEEEeehHHhhcccccccCCceEEEe
Confidence 37889999999999999999877667899999999987 788877766544 222333333222 23556789999752
Q ss_pred ccc--cCCcChHHHHHHHHHHHHhcCCCCceEee
Q 026036 155 DIL--LYVKQYSNLIKSLSVLLKSYKPKDSQVGH 186 (244)
Q Consensus 155 ~~l--~~~~~~~~l~~~l~~~~~~lk~gG~~~~~ 186 (244)
.+. +......+....+++++|+|||||+|.+.
T Consensus 136 ~~~~~~~~~~~~~~~~~~~e~~rvLkPGG~l~f~ 169 (236)
T 3orh_A 136 TYPLSEETWHTHQFNFIKNHAFRLLKPGGVLTYC 169 (236)
T ss_dssp CCCCBGGGTTTHHHHHHHHTHHHHEEEEEEEEEC
T ss_pred eeecccchhhhcchhhhhhhhhheeCCCCEEEEE
Confidence 221 12234556779999999999999998775
|
| >3cgg_A SAM-dependent methyltransferase; NP_600671.1, methyltransferase domain, structural genomics; HET: NHE CIT; 2.00A {Corynebacterium glutamicum atcc 13032} | Back alignment and structure |
|---|
Probab=99.64 E-value=4.5e-15 Score=114.61 Aligned_cols=128 Identities=17% Similarity=0.207 Sum_probs=95.2
Q ss_pred ccCCeEEEeCCCCcHHHHHHHHhCCCeEEEEeCChHHHHHHHHHhHHhcCCCCCcceEeeecCCCCCCCCCCccEEEEc-
Q 026036 76 IERRRCIELGSGTGALAIFLRKAMNLDITTSDYNDQEIEDNIAYNSTTNGITPALPHIKHSWGDAFPIPNPDWDLILAS- 154 (244)
Q Consensus 76 ~~~~~VLdlG~G~G~~~~~~a~~~~~~v~~~D~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fD~I~~~- 154 (244)
.++.+|||+|||+|.++..++.. +.+|+++|+++.++ +.++++.. ++..+..+..+ .+..+++||+|+++
T Consensus 45 ~~~~~vLdiG~G~G~~~~~l~~~-~~~v~~~D~~~~~~-~~a~~~~~------~~~~~~~d~~~-~~~~~~~~D~i~~~~ 115 (195)
T 3cgg_A 45 PRGAKILDAGCGQGRIGGYLSKQ-GHDVLGTDLDPILI-DYAKQDFP------EARWVVGDLSV-DQISETDFDLIVSAG 115 (195)
T ss_dssp CTTCEEEEETCTTTHHHHHHHHT-TCEEEEEESCHHHH-HHHHHHCT------TSEEEECCTTT-SCCCCCCEEEEEECC
T ss_pred cCCCeEEEECCCCCHHHHHHHHC-CCcEEEEcCCHHHH-HHHHHhCC------CCcEEEccccc-CCCCCCceeEEEECC
Confidence 36789999999999999999877 77999999999987 66666542 12334433332 34445789999998
Q ss_pred ccccCCcChHHHHHHHHHHHHhcCCCCceEeecccccCCCCCCCCCCCeEEEeeeeccCccchhhHHHHHhhcCCeEEEe
Q 026036 155 DILLYVKQYSNLIKSLSVLLKSYKPKDSQVGHLTKNEQGEGTEGLPWPAFLMSWRRRIGKEDETIFFTSCENAGLEVKHL 234 (244)
Q Consensus 155 ~~l~~~~~~~~l~~~l~~~~~~lk~gG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gf~v~~~ 234 (244)
+++ ++...+.....++++.+.|+|||++++..... ..+ +...+.+.++++||+++.+
T Consensus 116 ~~~-~~~~~~~~~~~l~~~~~~l~~~G~l~~~~~~~-------------------~~~---~~~~~~~~l~~~Gf~~~~~ 172 (195)
T 3cgg_A 116 NVM-GFLAEDGREPALANIHRALGADGRAVIGFGAG-------------------RGW---VFGDFLEVAERVGLELENA 172 (195)
T ss_dssp CCG-GGSCHHHHHHHHHHHHHHEEEEEEEEEEEETT-------------------SSC---CHHHHHHHHHHHTEEEEEE
T ss_pred cHH-hhcChHHHHHHHHHHHHHhCCCCEEEEEeCCC-------------------CCc---CHHHHHHHHHHcCCEEeee
Confidence 566 44455667799999999999999988763221 011 2478899999999999877
Q ss_pred c
Q 026036 235 G 235 (244)
Q Consensus 235 ~ 235 (244)
.
T Consensus 173 ~ 173 (195)
T 3cgg_A 173 F 173 (195)
T ss_dssp E
T ss_pred e
Confidence 3
|
| >3lec_A NADB-rossmann superfamily protein; PSI, MCSG, structural genomics, midwest CENT structural genomics, protein structure initiative; 1.80A {Streptococcus agalactiae} | Back alignment and structure |
|---|
Probab=99.63 E-value=3.5e-15 Score=118.27 Aligned_cols=133 Identities=15% Similarity=0.075 Sum_probs=100.0
Q ss_pred ccCCeEEEeCCCCcHHHHHHHHhC-CCeEEEEeCChHHHHHHHHHhHHhcCCCCCcceEeeecCCCCCCCCCCccEEEEc
Q 026036 76 IERRRCIELGSGTGALAIFLRKAM-NLDITTSDYNDQEIEDNIAYNSTTNGITPALPHIKHSWGDAFPIPNPDWDLILAS 154 (244)
Q Consensus 76 ~~~~~VLdlG~G~G~~~~~~a~~~-~~~v~~~D~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fD~I~~~ 154 (244)
.++.+|||+|||+|.+++.+++.+ ..+|+++|+++.++ +.+++|+..+++.+++..+..+..+... +..+||+|+..
T Consensus 20 ~~g~~VlDIGtGsG~l~i~la~~~~~~~V~AvDi~~~al-~~A~~N~~~~gl~~~I~~~~gD~l~~~~-~~~~~D~Ivia 97 (230)
T 3lec_A 20 PKGARLLDVGSDHAYLPIFLLQMGYCDFAIAGEVVNGPY-QSALKNVSEHGLTSKIDVRLANGLSAFE-EADNIDTITIC 97 (230)
T ss_dssp CTTEEEEEETCSTTHHHHHHHHTTCEEEEEEEESSHHHH-HHHHHHHHHTTCTTTEEEEECSGGGGCC-GGGCCCEEEEE
T ss_pred CCCCEEEEECCchHHHHHHHHHhCCCCEEEEEECCHHHH-HHHHHHHHHcCCCCcEEEEECchhhccc-cccccCEEEEe
Confidence 367899999999999999999886 45799999999997 8999999999986656555444333221 12379999877
Q ss_pred ccccCCcChHHHHHHHHHHHHhcCCCCceEeecccccCCCCCCCCCCCeEEEeeeeccCccchhhHHHHHhhcCCeEEEe
Q 026036 155 DILLYVKQYSNLIKSLSVLLKSYKPKDSQVGHLTKNEQGEGTEGLPWPAFLMSWRRRIGKEDETIFFTSCENAGLEVKHL 234 (244)
Q Consensus 155 ~~l~~~~~~~~l~~~l~~~~~~lk~gG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gf~v~~~ 234 (244)
.+- ...+.+.+......|+++|+|+++ +... .+.+.+.+.++||++.+.
T Consensus 98 GmG-----g~lI~~IL~~~~~~l~~~~~lIlq-----------------------p~~~---~~~lr~~L~~~Gf~i~~E 146 (230)
T 3lec_A 98 GMG-----GRLIADILNNDIDKLQHVKTLVLQ-----------------------PNNR---EDDLRKWLAANDFEIVAE 146 (230)
T ss_dssp EEC-----HHHHHHHHHHTGGGGTTCCEEEEE-----------------------ESSC---HHHHHHHHHHTTEEEEEE
T ss_pred CCc-----hHHHHHHHHHHHHHhCcCCEEEEE-----------------------CCCC---hHHHHHHHHHCCCEEEEE
Confidence 665 345668888888999999987775 1111 478889999999998765
Q ss_pred c-----cEEEEE
Q 026036 235 G-----SRVYCI 241 (244)
Q Consensus 235 ~-----~~~~~~ 241 (244)
. .+.|.|
T Consensus 147 ~lv~e~~~~Yei 158 (230)
T 3lec_A 147 DILTENDKRYEI 158 (230)
T ss_dssp EEEEC--CEEEE
T ss_pred EEEEECCEEEEE
Confidence 4 455544
|
| >4dcm_A Ribosomal RNA large subunit methyltransferase G; 23S rRNA (guanine1835-N2)-methyltransferase; HET: SAM; 2.30A {Escherichia coli} | Back alignment and structure |
|---|
Probab=99.63 E-value=2.5e-15 Score=128.34 Aligned_cols=143 Identities=13% Similarity=0.096 Sum_probs=96.0
Q ss_pred ccCCceEEEEecccCCCCcceeechHHHHHHHHhhccCcccCCeEEEeCCCCcHHHHHHHHhC-CCeEEEEeCChHHHHH
Q 026036 37 QFPEMELVIREFAFHQLNANFLWPGTFSFAEWLMHHREWIERRRCIELGSGTGALAIFLRKAM-NLDITTSDYNDQEIED 115 (244)
Q Consensus 37 ~~~~~~~~~~~~~~~~~~~~~~w~~~~~l~~~~~~~~~~~~~~~VLdlG~G~G~~~~~~a~~~-~~~v~~~D~~~~~l~~ 115 (244)
..++..+.+.... |.+.+..-..-++++.......++.+|||+|||+|.+++.+++.+ +.+|+++|+++.++ +
T Consensus 187 ~~~~~~~~~~~~p-----g~Fs~~~~d~~~~~ll~~l~~~~~~~VLDlGcG~G~~s~~la~~~p~~~V~gvD~s~~al-~ 260 (375)
T 4dcm_A 187 KLEGTDWTIHNHA-----NVFSRTGLDIGARFFMQHLPENLEGEIVDLGCGNGVIGLTLLDKNPQAKVVFVDESPMAV-A 260 (375)
T ss_dssp EETTTTEEEEECT-----TCTTCSSCCHHHHHHHHTCCCSCCSEEEEETCTTCHHHHHHHHHCTTCEEEEEESCHHHH-H
T ss_pred EecCCceEEEeCC-----CcccCCcccHHHHHHHHhCcccCCCeEEEEeCcchHHHHHHHHHCCCCEEEEEECcHHHH-H
Confidence 3455566665543 222222222233344444455566899999999999999999887 78999999999987 8
Q ss_pred HHHHhHHhcCCCCCcceEeeecCCCCC-CCCCCccEEEEcccccCCc--ChHHHHHHHHHHHHhcCCCCceEee
Q 026036 116 NIAYNSTTNGITPALPHIKHSWGDAFP-IPNPDWDLILASDILLYVK--QYSNLIKSLSVLLKSYKPKDSQVGH 186 (244)
Q Consensus 116 ~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~fD~I~~~~~l~~~~--~~~~l~~~l~~~~~~lk~gG~~~~~ 186 (244)
.+++|...+++.... .+.+.+++... ...++||+|+++.+++... ......++++++.+.|||||+++++
T Consensus 261 ~Ar~n~~~ngl~~~~-~v~~~~~D~~~~~~~~~fD~Ii~nppfh~~~~~~~~~~~~~l~~~~~~LkpgG~l~iv 333 (375)
T 4dcm_A 261 SSRLNVETNMPEALD-RCEFMINNALSGVEPFRFNAVLCNPPFHQQHALTDNVAWEMFHHARRCLKINGELYIV 333 (375)
T ss_dssp HHHHHHHHHCGGGGG-GEEEEECSTTTTCCTTCEEEEEECCCC-------CCHHHHHHHHHHHHEEEEEEEEEE
T ss_pred HHHHHHHHcCCCcCc-eEEEEechhhccCCCCCeeEEEECCCcccCcccCHHHHHHHHHHHHHhCCCCcEEEEE
Confidence 899999888764321 23344444332 3456899999999874321 1223347899999999999998886
|
| >3gu3_A Methyltransferase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium, NESG; HET: SAH; 2.30A {Bacillus cereus} SCOP: c.66.1.49 PDB: 2gh1_A | Back alignment and structure |
|---|
Probab=99.63 E-value=5.7e-15 Score=121.55 Aligned_cols=109 Identities=13% Similarity=0.143 Sum_probs=82.5
Q ss_pred cCcccCCeEEEeCCCCcHHHHHHHHhC--CCeEEEEeCChHHHHHHHHHhHHhcCCCCCcceEeeecCCCCCCCCCCccE
Q 026036 73 REWIERRRCIELGSGTGALAIFLRKAM--NLDITTSDYNDQEIEDNIAYNSTTNGITPALPHIKHSWGDAFPIPNPDWDL 150 (244)
Q Consensus 73 ~~~~~~~~VLdlG~G~G~~~~~~a~~~--~~~v~~~D~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fD~ 150 (244)
....++.+|||+|||+|..+..++... +.+|+++|+++.++ +.++++....+. ++..+..+..+ .+. .++||+
T Consensus 18 ~~~~~~~~vLDiGcG~G~~~~~l~~~~~~~~~v~gvD~s~~~~-~~a~~~~~~~~~--~v~~~~~d~~~-~~~-~~~fD~ 92 (284)
T 3gu3_A 18 WKITKPVHIVDYGCGYGYLGLVLMPLLPEGSKYTGIDSGETLL-AEARELFRLLPY--DSEFLEGDATE-IEL-NDKYDI 92 (284)
T ss_dssp SCCCSCCEEEEETCTTTHHHHHHTTTSCTTCEEEEEESCHHHH-HHHHHHHHSSSS--EEEEEESCTTT-CCC-SSCEEE
T ss_pred hccCCCCeEEEecCCCCHHHHHHHHhCCCCCEEEEEECCHHHH-HHHHHHHHhcCC--ceEEEEcchhh-cCc-CCCeeE
Confidence 355678899999999999999998775 47999999999987 777777665443 33334333332 333 458999
Q ss_pred EEEcccccCCcChHHHHHHHHHHHHhcCCCCceEeeccc
Q 026036 151 ILASDILLYVKQYSNLIKSLSVLLKSYKPKDSQVGHLTK 189 (244)
Q Consensus 151 I~~~~~l~~~~~~~~l~~~l~~~~~~lk~gG~~~~~~~~ 189 (244)
|++..++.+. ++..+.++++.+.|||||.+++..+.
T Consensus 93 v~~~~~l~~~---~~~~~~l~~~~~~LkpgG~l~~~~~~ 128 (284)
T 3gu3_A 93 AICHAFLLHM---TTPETMLQKMIHSVKKGGKIICFEPH 128 (284)
T ss_dssp EEEESCGGGC---SSHHHHHHHHHHTEEEEEEEEEEECC
T ss_pred EEECChhhcC---CCHHHHHHHHHHHcCCCCEEEEEecc
Confidence 9999998443 34459999999999999999987554
|
| >3dp7_A SAM-dependent methyltransferase; structural genomics, protein structure initiative, NEW YORK structural genomix research; 2.33A {Bacteroides vulgatus} | Back alignment and structure |
|---|
Probab=99.63 E-value=6.6e-15 Score=125.33 Aligned_cols=154 Identities=17% Similarity=0.162 Sum_probs=104.0
Q ss_pred ccCCeEEEeCCCCcHHHHHHHHhC-CCeEEEEeCChHHHHHHHHHhHHhcCCCCCcceEeeecCCCC-CCCCCCccEEEE
Q 026036 76 IERRRCIELGSGTGALAIFLRKAM-NLDITTSDYNDQEIEDNIAYNSTTNGITPALPHIKHSWGDAF-PIPNPDWDLILA 153 (244)
Q Consensus 76 ~~~~~VLdlG~G~G~~~~~~a~~~-~~~v~~~D~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~fD~I~~ 153 (244)
....+|||||||+|..+..+++.. +.+++++|+ +.++ +.++++....++..++..+..+..+.. +.+ ++||+|++
T Consensus 178 ~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~-~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~p-~~~D~v~~ 254 (363)
T 3dp7_A 178 HHPKRLLDIGGNTGKWATQCVQYNKEVEVTIVDL-PQQL-EMMRKQTAGLSGSERIHGHGANLLDRDVPFP-TGFDAVWM 254 (363)
T ss_dssp GCCSEEEEESCTTCHHHHHHHHHSTTCEEEEEEC-HHHH-HHHHHHHTTCTTGGGEEEEECCCCSSSCCCC-CCCSEEEE
T ss_pred cCCCEEEEeCCCcCHHHHHHHHhCCCCEEEEEeC-HHHH-HHHHHHHHhcCcccceEEEEccccccCCCCC-CCcCEEEE
Confidence 356799999999999999998876 679999999 8776 788877776665444555544443321 233 68999999
Q ss_pred cccccCCcChHHHHHHHHHHHHhcCCCCceEeecccccCCCCCCC-----CCCCeE--EEeeeeccCccchhhHHHHHhh
Q 026036 154 SDILLYVKQYSNLIKSLSVLLKSYKPKDSQVGHLTKNEQGEGTEG-----LPWPAF--LMSWRRRIGKEDETIFFTSCEN 226 (244)
Q Consensus 154 ~~~l~~~~~~~~l~~~l~~~~~~lk~gG~~~~~~~~~~~~~~~~~-----~~~~~~--~~~~~~~~~~~~~~~~~~~l~~ 226 (244)
..++ ++...++..+.++++++.|||||++++............. .....+ ......+. .+.+++.+++++
T Consensus 255 ~~vl-h~~~~~~~~~~l~~~~~~L~pgG~l~i~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~t~~e~~~ll~~ 331 (363)
T 3dp7_A 255 SQFL-DCFSEEEVISILTRVAQSIGKDSKVYIMETLWDRQRYETASYCLTQISLYFTAMANGNSKM--FHSDDLIRCIEN 331 (363)
T ss_dssp ESCS-TTSCHHHHHHHHHHHHHHCCTTCEEEEEECCTTSCSSHHHHHHHHHHHHHHHHSSCSSCCS--CCHHHHHHHHHT
T ss_pred echh-hhCCHHHHHHHHHHHHHhcCCCcEEEEEeeccCCccccchhhHHHHhhhhHHhhhCCCCcc--cCHHHHHHHHHH
Confidence 9999 4444566778999999999999999887443332211000 000000 00011111 235899999999
Q ss_pred cCCeEEEec
Q 026036 227 AGLEVKHLG 235 (244)
Q Consensus 227 ~Gf~v~~~~ 235 (244)
+||+++++.
T Consensus 332 AGf~~v~~~ 340 (363)
T 3dp7_A 332 AGLEVEEIQ 340 (363)
T ss_dssp TTEEESCCC
T ss_pred cCCeEEEEE
Confidence 999988775
|
| >3m33_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, MCSG, midwest center for structural genomics; 2.19A {Deinococcus radiodurans} | Back alignment and structure |
|---|
Probab=99.63 E-value=1.5e-15 Score=120.82 Aligned_cols=137 Identities=12% Similarity=0.085 Sum_probs=97.2
Q ss_pred hHHHHHHHHhhccCcccCCeEEEeCCCCcHHHHHHHHhCCCeEEEEeCChHHHHHHHHHhHHhcCCCCCcceEeeecCCC
Q 026036 61 GTFSFAEWLMHHREWIERRRCIELGSGTGALAIFLRKAMNLDITTSDYNDQEIEDNIAYNSTTNGITPALPHIKHSWGDA 140 (244)
Q Consensus 61 ~~~~l~~~~~~~~~~~~~~~VLdlG~G~G~~~~~~a~~~~~~v~~~D~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 140 (244)
....+.+.+.... ..++.+|||+|||+|.++..+++. +.+|+++|+++.++ +.++++. .++..+..++.+.
T Consensus 33 ~~~~l~~~~~~~~-~~~~~~vLDiGcG~G~~~~~l~~~-~~~v~~vD~s~~~~-~~a~~~~------~~~~~~~~d~~~~ 103 (226)
T 3m33_A 33 DPELTFDLWLSRL-LTPQTRVLEAGCGHGPDAARFGPQ-AARWAAYDFSPELL-KLARANA------PHADVYEWNGKGE 103 (226)
T ss_dssp CTTHHHHHHHHHH-CCTTCEEEEESCTTSHHHHHHGGG-SSEEEEEESCHHHH-HHHHHHC------TTSEEEECCSCSS
T ss_pred CHHHHHHHHHHhc-CCCCCeEEEeCCCCCHHHHHHHHc-CCEEEEEECCHHHH-HHHHHhC------CCceEEEcchhhc
Confidence 3444444433321 136789999999999999999887 77999999999987 6776661 2345566666556
Q ss_pred CCCC-CCCccEEEEcccccCCcChHHHHHHHHHHHHhcCCCCceEeecccccCCCCCCCCCCCeEEEeeeeccCccchhh
Q 026036 141 FPIP-NPDWDLILASDILLYVKQYSNLIKSLSVLLKSYKPKDSQVGHLTKNEQGEGTEGLPWPAFLMSWRRRIGKEDETI 219 (244)
Q Consensus 141 ~~~~-~~~fD~I~~~~~l~~~~~~~~l~~~l~~~~~~lk~gG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 219 (244)
+++. +++||+|+++. +....++++.+.|||||+++. ..... +...
T Consensus 104 ~~~~~~~~fD~v~~~~---------~~~~~l~~~~~~LkpgG~l~~----------------------~~~~~---~~~~ 149 (226)
T 3m33_A 104 LPAGLGAPFGLIVSRR---------GPTSVILRLPELAAPDAHFLY----------------------VGPRL---NVPE 149 (226)
T ss_dssp CCTTCCCCEEEEEEES---------CCSGGGGGHHHHEEEEEEEEE----------------------EESSS---CCTH
T ss_pred cCCcCCCCEEEEEeCC---------CHHHHHHHHHHHcCCCcEEEE----------------------eCCcC---CHHH
Confidence 6666 77999999972 122677889999999997661 11111 1368
Q ss_pred HHHHHhhcCCeEEEeccEEEE
Q 026036 220 FFTSCENAGLEVKHLGSRVYC 240 (244)
Q Consensus 220 ~~~~l~~~Gf~v~~~~~~~~~ 240 (244)
+.+.++++||++..+....+.
T Consensus 150 ~~~~l~~~Gf~~~~~~~~~~~ 170 (226)
T 3m33_A 150 VPERLAAVGWDIVAEDHVSVL 170 (226)
T ss_dssp HHHHHHHTTCEEEEEEEEEEE
T ss_pred HHHHHHHCCCeEEEEEeeeec
Confidence 889999999999887755443
|
| >3q7e_A Protein arginine N-methyltransferase 1; HET: SAH; 2.20A {Rattus norvegicus} PDB: 1orh_A* 1ori_A* 1or8_A* | Back alignment and structure |
|---|
Probab=99.63 E-value=1.6e-15 Score=128.52 Aligned_cols=119 Identities=19% Similarity=0.219 Sum_probs=91.7
Q ss_pred HHHHHhhccCcccCCeEEEeCCCCcHHHHHHHHhCCCeEEEEeCChHHHHHHHHHhHHhcCCCCCcceEeeecCCCCCCC
Q 026036 65 FAEWLMHHREWIERRRCIELGSGTGALAIFLRKAMNLDITTSDYNDQEIEDNIAYNSTTNGITPALPHIKHSWGDAFPIP 144 (244)
Q Consensus 65 l~~~~~~~~~~~~~~~VLdlG~G~G~~~~~~a~~~~~~v~~~D~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 144 (244)
..+.+.......++.+|||||||+|.++..+++.+..+|+|+|+|+ ++ +.+++++..+++.+++..+..+..+ .+.+
T Consensus 54 ~~~~i~~~~~~~~~~~VLDvGcG~G~~~~~la~~g~~~v~gvD~s~-~l-~~a~~~~~~~~~~~~v~~~~~d~~~-~~~~ 130 (349)
T 3q7e_A 54 YRNSMFHNRHLFKDKVVLDVGSGTGILCMFAAKAGARKVIGIECSS-IS-DYAVKIVKANKLDHVVTIIKGKVEE-VELP 130 (349)
T ss_dssp HHHHHHTCHHHHTTCEEEEESCTTSHHHHHHHHTTCSEEEEEECST-HH-HHHHHHHHHTTCTTTEEEEESCTTT-CCCS
T ss_pred HHHHHHhccccCCCCEEEEEeccchHHHHHHHHCCCCEEEEECcHH-HH-HHHHHHHHHcCCCCcEEEEECcHHH-ccCC
Confidence 3444555555678899999999999999999988667999999995 76 8888888888886666666655543 3555
Q ss_pred CCCccEEEEcccccCCcChHHHHHHHHHHHHhcCCCCceEee
Q 026036 145 NPDWDLILASDILLYVKQYSNLIKSLSVLLKSYKPKDSQVGH 186 (244)
Q Consensus 145 ~~~fD~I~~~~~l~~~~~~~~l~~~l~~~~~~lk~gG~~~~~ 186 (244)
.++||+|++..+.+.......+...++++.+.|||||+++..
T Consensus 131 ~~~fD~Iis~~~~~~l~~~~~~~~~l~~~~r~LkpgG~li~~ 172 (349)
T 3q7e_A 131 VEKVDIIISEWMGYCLFYESMLNTVLHARDKWLAPDGLIFPD 172 (349)
T ss_dssp SSCEEEEEECCCBBTBTBTCCHHHHHHHHHHHEEEEEEEESC
T ss_pred CCceEEEEEccccccccCchhHHHHHHHHHHhCCCCCEEccc
Confidence 679999999776544333445668889999999999987644
|
| >3hp7_A Hemolysin, putative; structural genomics, APC64019, PSI-2, protein STR initiative, midwest center for structural genomics, MCSG; HET: MSE; 1.53A {Streptococcus thermophilus} | Back alignment and structure |
|---|
Probab=99.63 E-value=5.4e-16 Score=127.22 Aligned_cols=164 Identities=12% Similarity=0.068 Sum_probs=99.3
Q ss_pred eeechHHHHHHHHhhccCcccCCeEEEeCCCCcHHHHHHHHhCCCeEEEEeCChHHHHHH-HHHhHHhcCCCCCcceEee
Q 026036 57 FLWPGTFSFAEWLMHHREWIERRRCIELGSGTGALAIFLRKAMNLDITTSDYNDQEIEDN-IAYNSTTNGITPALPHIKH 135 (244)
Q Consensus 57 ~~w~~~~~l~~~~~~~~~~~~~~~VLdlG~G~G~~~~~~a~~~~~~v~~~D~~~~~l~~~-~~~~~~~~~~~~~~~~~~~ 135 (244)
++..++..+...+.......++.+|||+|||||.++..+++.+..+|+|+|+++.|+ +. ++.+...... ....+
T Consensus 65 yvsrg~~Kl~~~l~~~~~~~~g~~vLDiGcGTG~~t~~L~~~ga~~V~aVDvs~~mL-~~a~r~~~rv~~~----~~~ni 139 (291)
T 3hp7_A 65 YVSRGGLKLEKALAVFNLSVEDMITIDIGASTGGFTDVMLQNGAKLVYAVDVGTNQL-VWKLRQDDRVRSM----EQYNF 139 (291)
T ss_dssp SSSTTHHHHHHHHHHTTCCCTTCEEEEETCTTSHHHHHHHHTTCSEEEEECSSSSCS-CHHHHTCTTEEEE----CSCCG
T ss_pred cccchHHHHHHHHHhcCCCccccEEEecCCCccHHHHHHHhCCCCEEEEEECCHHHH-HHHHHhCccccee----cccCc
Confidence 455578888888776655557889999999999999999887667999999999987 44 3321110000 00000
Q ss_pred ecCCCCCCCCCCccEEEEcccccCCcChHHHHHHHHHHHHhcCCCCceEeec-ccccCCCCCCCCCCCeEEEeeeeccCc
Q 026036 136 SWGDAFPIPNPDWDLILASDILLYVKQYSNLIKSLSVLLKSYKPKDSQVGHL-TKNEQGEGTEGLPWPAFLMSWRRRIGK 214 (244)
Q Consensus 136 ~~~~~~~~~~~~fD~I~~~~~l~~~~~~~~l~~~l~~~~~~lk~gG~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~ 214 (244)
........+..+||+|++.-++ ++ . ..++.+++++|||||++++.+ +.+.......- ....+..+..++.
T Consensus 140 ~~l~~~~l~~~~fD~v~~d~sf-~s--l---~~vL~e~~rvLkpGG~lv~lvkPqfe~~~~~~~-~~G~vrd~~~~~~-- 210 (291)
T 3hp7_A 140 RYAEPVDFTEGLPSFASIDVSF-IS--L---NLILPALAKILVDGGQVVALVKPQFEAGREQIG-KNGIVRESSIHEK-- 210 (291)
T ss_dssp GGCCGGGCTTCCCSEEEECCSS-SC--G---GGTHHHHHHHSCTTCEEEEEECGGGTSCGGGCC--CCCCCCHHHHHH--
T ss_pred eecchhhCCCCCCCEEEEEeeH-hh--H---HHHHHHHHHHcCcCCEEEEEECcccccChhhcC-CCCccCCHHHHHH--
Confidence 0101111223459999985444 42 2 488999999999999998863 22221111110 0000000011111
Q ss_pred cchhhHHHHHhhcCCeEEEec
Q 026036 215 EDETIFFTSCENAGLEVKHLG 235 (244)
Q Consensus 215 ~~~~~~~~~l~~~Gf~v~~~~ 235 (244)
..+++.++++++||++..+.
T Consensus 211 -~~~~v~~~~~~~Gf~v~~~~ 230 (291)
T 3hp7_A 211 -VLETVTAFAVDYGFSVKGLD 230 (291)
T ss_dssp -HHHHHHHHHHHTTEEEEEEE
T ss_pred -HHHHHHHHHHHCCCEEEEEE
Confidence 24678889999999988764
|
| >2fpo_A Methylase YHHF; structural genomics, putative methyltransferase, PSI, protei structure initiative; HET: MSE; 2.05A {Escherichia coli} SCOP: c.66.1.46 | Back alignment and structure |
|---|
Probab=99.63 E-value=4.3e-16 Score=122.04 Aligned_cols=126 Identities=12% Similarity=0.050 Sum_probs=84.8
Q ss_pred eechHHHHHHHHhhccCc-ccCCeEEEeCCCCcHHHHHHHHhCCCeEEEEeCChHHHHHHHHHhHHhcCCCCCcceEeee
Q 026036 58 LWPGTFSFAEWLMHHREW-IERRRCIELGSGTGALAIFLRKAMNLDITTSDYNDQEIEDNIAYNSTTNGITPALPHIKHS 136 (244)
Q Consensus 58 ~w~~~~~l~~~~~~~~~~-~~~~~VLdlG~G~G~~~~~~a~~~~~~v~~~D~~~~~l~~~~~~~~~~~~~~~~~~~~~~~ 136 (244)
..|....+.+.+...... .++.+|||+|||+|.+++.++..+..+|+++|+++.++ +.+++|...+++ .++..+..+
T Consensus 34 ~rp~~~~~~~~l~~~l~~~~~~~~vLDlgcG~G~~~~~l~~~~~~~V~~vD~s~~~l-~~a~~~~~~~~~-~~v~~~~~D 111 (202)
T 2fpo_A 34 LRPTTDRVRETLFNWLAPVIVDAQCLDCFAGSGALGLEALSRYAAGATLIEMDRAVS-QQLIKNLATLKA-GNARVVNSN 111 (202)
T ss_dssp ----CHHHHHHHHHHHHHHHTTCEEEETTCTTCHHHHHHHHTTCSEEEEECSCHHHH-HHHHHHHHHTTC-CSEEEECSC
T ss_pred CCCCHHHHHHHHHHHHHhhcCCCeEEEeCCCcCHHHHHHHhcCCCEEEEEECCHHHH-HHHHHHHHHcCC-CcEEEEECC
Confidence 344445555554443322 36789999999999999987777667999999999997 888999888776 333444333
Q ss_pred cCCCCCCCCCCccEEEEcccccCCcChHHHHHHHHHHHH--hcCCCCceEeeccc
Q 026036 137 WGDAFPIPNPDWDLILASDILLYVKQYSNLIKSLSVLLK--SYKPKDSQVGHLTK 189 (244)
Q Consensus 137 ~~~~~~~~~~~fD~I~~~~~l~~~~~~~~l~~~l~~~~~--~lk~gG~~~~~~~~ 189 (244)
..+.++...++||+|++..+ |+.... ...++.+.+ +|+|||.+++....
T Consensus 112 ~~~~~~~~~~~fD~V~~~~p-~~~~~~---~~~l~~l~~~~~L~pgG~l~i~~~~ 162 (202)
T 2fpo_A 112 AMSFLAQKGTPHNIVFVDPP-FRRGLL---EETINLLEDNGWLADEALIYVESEV 162 (202)
T ss_dssp HHHHHSSCCCCEEEEEECCS-SSTTTH---HHHHHHHHHTTCEEEEEEEEEEEEG
T ss_pred HHHHHhhcCCCCCEEEECCC-CCCCcH---HHHHHHHHhcCccCCCcEEEEEECC
Confidence 32223334568999999877 353333 366666655 59999998887443
|
| >2fyt_A Protein arginine N-methyltransferase 3; structural genomics, structural genomics consortium, SGC; HET: SAH; 2.00A {Homo sapiens} SCOP: c.66.1.6 PDB: 3smq_A* 1f3l_A* | Back alignment and structure |
|---|
Probab=99.62 E-value=3.4e-15 Score=125.99 Aligned_cols=117 Identities=17% Similarity=0.204 Sum_probs=89.9
Q ss_pred HHHHHhhccCcccCCeEEEeCCCCcHHHHHHHHhCCCeEEEEeCChHHHHHHHHHhHHhcCCCCCcceEeeecCCCCCCC
Q 026036 65 FAEWLMHHREWIERRRCIELGSGTGALAIFLRKAMNLDITTSDYNDQEIEDNIAYNSTTNGITPALPHIKHSWGDAFPIP 144 (244)
Q Consensus 65 l~~~~~~~~~~~~~~~VLdlG~G~G~~~~~~a~~~~~~v~~~D~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 144 (244)
..+.+.......++.+|||||||+|.++..+++.+..+|+++|+++ ++ +.+++++..+++..++..+..+..+ ++.+
T Consensus 52 ~~~~i~~~~~~~~~~~VLDiGcGtG~ls~~la~~g~~~v~gvD~s~-~~-~~a~~~~~~~~~~~~i~~~~~d~~~-~~~~ 128 (340)
T 2fyt_A 52 YRDFIYQNPHIFKDKVVLDVGCGTGILSMFAAKAGAKKVLGVDQSE-IL-YQAMDIIRLNKLEDTITLIKGKIEE-VHLP 128 (340)
T ss_dssp HHHHHHHCGGGTTTCEEEEETCTTSHHHHHHHHTTCSEEEEEESST-HH-HHHHHHHHHTTCTTTEEEEESCTTT-SCCS
T ss_pred HHHHHHhhhhhcCCCEEEEeeccCcHHHHHHHHcCCCEEEEEChHH-HH-HHHHHHHHHcCCCCcEEEEEeeHHH-hcCC
Confidence 4456666666678899999999999999999987666999999996 76 8888888888875556555544433 3455
Q ss_pred CCCccEEEEcccccCCcChHHHHHHHHHHHHhcCCCCceE
Q 026036 145 NPDWDLILASDILLYVKQYSNLIKSLSVLLKSYKPKDSQV 184 (244)
Q Consensus 145 ~~~fD~I~~~~~l~~~~~~~~l~~~l~~~~~~lk~gG~~~ 184 (244)
.++||+|++..+.|.......+...+.++.+.|||||+++
T Consensus 129 ~~~~D~Ivs~~~~~~l~~~~~~~~~l~~~~~~LkpgG~li 168 (340)
T 2fyt_A 129 VEKVDVIISEWMGYFLLFESMLDSVLYAKNKYLAKGGSVY 168 (340)
T ss_dssp CSCEEEEEECCCBTTBTTTCHHHHHHHHHHHHEEEEEEEE
T ss_pred CCcEEEEEEcCchhhccCHHHHHHHHHHHHhhcCCCcEEE
Confidence 5789999998754333334456688999999999999887
|
| >3cc8_A Putative methyltransferase; structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PS transferase; 1.64A {Bacillus cereus} | Back alignment and structure |
|---|
Probab=99.62 E-value=2.1e-15 Score=119.60 Aligned_cols=148 Identities=10% Similarity=0.110 Sum_probs=98.2
Q ss_pred ccCCeEEEeCCCCcHHHHHHHHhCCCeEEEEeCChHHHHHHHHHhHHhcCCCCCcceEeeecCC-CCCCCCCCccEEEEc
Q 026036 76 IERRRCIELGSGTGALAIFLRKAMNLDITTSDYNDQEIEDNIAYNSTTNGITPALPHIKHSWGD-AFPIPNPDWDLILAS 154 (244)
Q Consensus 76 ~~~~~VLdlG~G~G~~~~~~a~~~~~~v~~~D~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~fD~I~~~ 154 (244)
.++.+|||+|||+|..+..++.. +.+|+++|+++.++ +.++.+.. ..+..+..+ ..++.+++||+|+++
T Consensus 31 ~~~~~vLdiG~G~G~~~~~l~~~-~~~~~~~D~~~~~~-~~~~~~~~--------~~~~~d~~~~~~~~~~~~fD~v~~~ 100 (230)
T 3cc8_A 31 KEWKEVLDIGCSSGALGAAIKEN-GTRVSGIEAFPEAA-EQAKEKLD--------HVVLGDIETMDMPYEEEQFDCVIFG 100 (230)
T ss_dssp TTCSEEEEETCTTSHHHHHHHTT-TCEEEEEESSHHHH-HHHHTTSS--------EEEESCTTTCCCCSCTTCEEEEEEE
T ss_pred cCCCcEEEeCCCCCHHHHHHHhc-CCeEEEEeCCHHHH-HHHHHhCC--------cEEEcchhhcCCCCCCCccCEEEEC
Confidence 46789999999999999999887 68999999999987 55554321 123333322 234556789999999
Q ss_pred ccccCCcChHHHHHHHHHHHHhcCCCCceEeecccccCCC-------CCCCCCCCeEEEeeeeccCccchhhHHHHHhhc
Q 026036 155 DILLYVKQYSNLIKSLSVLLKSYKPKDSQVGHLTKNEQGE-------GTEGLPWPAFLMSWRRRIGKEDETIFFTSCENA 227 (244)
Q Consensus 155 ~~l~~~~~~~~l~~~l~~~~~~lk~gG~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 227 (244)
+++++.. +....++++.+.|+|||.+++.++...... ................+. .+..++.++++++
T Consensus 101 ~~l~~~~---~~~~~l~~~~~~L~~gG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~l~~~ 175 (230)
T 3cc8_A 101 DVLEHLF---DPWAVIEKVKPYIKQNGVILASIPNVSHISVLAPLLAGNWTYTEYGLLDKTHIRF--FTFNEMLRMFLKA 175 (230)
T ss_dssp SCGGGSS---CHHHHHHHTGGGEEEEEEEEEEEECTTSHHHHHHHHTTCCCCBSSSTTBTTCCCC--CCHHHHHHHHHHT
T ss_pred ChhhhcC---CHHHHHHHHHHHcCCCCEEEEEeCCcchHHHHHHHhcCCceeccCCCCCcceEEE--ecHHHHHHHHHHc
Confidence 9994433 334899999999999999998865432110 000000000000001111 2358899999999
Q ss_pred CCeEEEeccEE
Q 026036 228 GLEVKHLGSRV 238 (244)
Q Consensus 228 Gf~v~~~~~~~ 238 (244)
||+++.+....
T Consensus 176 Gf~~~~~~~~~ 186 (230)
T 3cc8_A 176 GYSISKVDRVY 186 (230)
T ss_dssp TEEEEEEEEEE
T ss_pred CCeEEEEEecc
Confidence 99998877644
|
| >1yzh_A TRNA (guanine-N(7)-)-methyltransferase; alpha-beta-alpha sandwich, S-adenosylmeth dependent, structural genomics, PSI; 2.02A {Streptococcus pneumoniae} SCOP: c.66.1.53 | Back alignment and structure |
|---|
Probab=99.62 E-value=8.8e-15 Score=115.41 Aligned_cols=107 Identities=13% Similarity=0.125 Sum_probs=79.4
Q ss_pred cCCeEEEeCCCCcHHHHHHHHhC-CCeEEEEeCChHHHHHHHHHhHHhcCCCCCcceEeeecCCCCC--CCCCCccEEEE
Q 026036 77 ERRRCIELGSGTGALAIFLRKAM-NLDITTSDYNDQEIEDNIAYNSTTNGITPALPHIKHSWGDAFP--IPNPDWDLILA 153 (244)
Q Consensus 77 ~~~~VLdlG~G~G~~~~~~a~~~-~~~v~~~D~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~fD~I~~ 153 (244)
++.+|||||||+|.+++.+++.. +.+|+|+|+++.++ +.+++++..+++ .++..+..+..+ ++ +..++||+|++
T Consensus 41 ~~~~vLDiGcG~G~~~~~la~~~p~~~v~gvD~s~~~l-~~a~~~~~~~~~-~~v~~~~~d~~~-~~~~~~~~~~D~i~~ 117 (214)
T 1yzh_A 41 DNPIHVEVGSGKGAFVSGMAKQNPDINYIGIDIQKSVL-SYALDKVLEVGV-PNIKLLWVDGSD-LTDYFEDGEIDRLYL 117 (214)
T ss_dssp CCCEEEEESCTTSHHHHHHHHHCTTSEEEEEESCHHHH-HHHHHHHHHHCC-SSEEEEECCSSC-GGGTSCTTCCSEEEE
T ss_pred CCCeEEEEccCcCHHHHHHHHHCCCCCEEEEEcCHHHH-HHHHHHHHHcCC-CCEEEEeCCHHH-HHhhcCCCCCCEEEE
Confidence 56799999999999999999886 57999999999987 888888877766 344455444433 22 44568999999
Q ss_pred cccccCCcC-hH----HHHHHHHHHHHhcCCCCceEee
Q 026036 154 SDILLYVKQ-YS----NLIKSLSVLLKSYKPKDSQVGH 186 (244)
Q Consensus 154 ~~~l~~~~~-~~----~l~~~l~~~~~~lk~gG~~~~~ 186 (244)
+.+..+... .. .....++.+.+.|+|||.+++.
T Consensus 118 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~ 155 (214)
T 1yzh_A 118 NFSDPWPKKRHEKRRLTYKTFLDTFKRILPENGEIHFK 155 (214)
T ss_dssp ESCCCCCSGGGGGGSTTSHHHHHHHHHHSCTTCEEEEE
T ss_pred ECCCCccccchhhhccCCHHHHHHHHHHcCCCcEEEEE
Confidence 866421110 00 1237889999999999998876
|
| >4e2x_A TCAB9; kijanose, tetronitrose, tetradeoxy sugar, sugar methylation, transferase; HET: SAH TYD; 1.40A {Micromonospora chalcea} PDB: 3ndi_A* 3ndj_A* 4e32_A* 4e33_A* 4e2y_A* 4e31_A* 4e2w_A* 4e2z_A* 4e30_A* | Back alignment and structure |
|---|
Probab=99.62 E-value=5.8e-17 Score=140.42 Aligned_cols=161 Identities=11% Similarity=-0.014 Sum_probs=103.5
Q ss_pred HHHHHHHHhhccCcccCCeEEEeCCCCcHHHHHHHHhCCCeEEEEeCChHHHHHHHHHhHHhcCCCCCcceEeeecCCCC
Q 026036 62 TFSFAEWLMHHREWIERRRCIELGSGTGALAIFLRKAMNLDITTSDYNDQEIEDNIAYNSTTNGITPALPHIKHSWGDAF 141 (244)
Q Consensus 62 ~~~l~~~~~~~~~~~~~~~VLdlG~G~G~~~~~~a~~~~~~v~~~D~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 141 (244)
...+++.+.......++.+|||||||+|.++..++.. +.+|+++|+|+.++ +.++++ +.............+.+
T Consensus 92 ~~~~~~~l~~~~~~~~~~~VLDiGcG~G~~~~~l~~~-g~~v~gvD~s~~~~-~~a~~~----~~~~~~~~~~~~~~~~l 165 (416)
T 4e2x_A 92 FAMLARDFLATELTGPDPFIVEIGCNDGIMLRTIQEA-GVRHLGFEPSSGVA-AKAREK----GIRVRTDFFEKATADDV 165 (416)
T ss_dssp HHHHHHHHHHTTTCSSSCEEEEETCTTTTTHHHHHHT-TCEEEEECCCHHHH-HHHHTT----TCCEECSCCSHHHHHHH
T ss_pred HHHHHHHHHHHhCCCCCCEEEEecCCCCHHHHHHHHc-CCcEEEECCCHHHH-HHHHHc----CCCcceeeechhhHhhc
Confidence 3345556666666667889999999999999999876 66999999999987 655544 22111111100111112
Q ss_pred CCCCCCccEEEEcccccCCcChHHHHHHHHHHHHhcCCCCceEeecccccCCCCCCCCCCCeEEEeeeeccCccchhhHH
Q 026036 142 PIPNPDWDLILASDILLYVKQYSNLIKSLSVLLKSYKPKDSQVGHLTKNEQGEGTEGLPWPAFLMSWRRRIGKEDETIFF 221 (244)
Q Consensus 142 ~~~~~~fD~I~~~~~l~~~~~~~~l~~~l~~~~~~lk~gG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 221 (244)
++.+++||+|++++++++. ++...++++++++|||||++++.++......... ... .+...+...+ +...+.
T Consensus 166 ~~~~~~fD~I~~~~vl~h~---~d~~~~l~~~~r~LkpgG~l~i~~~~~~~~~~~~-~~~-~~~~~~~~~~---s~~~l~ 237 (416)
T 4e2x_A 166 RRTEGPANVIYAANTLCHI---PYVQSVLEGVDALLAPDGVFVFEDPYLGDIVAKT-SFD-QIFDEHFFLF---SATSVQ 237 (416)
T ss_dssp HHHHCCEEEEEEESCGGGC---TTHHHHHHHHHHHEEEEEEEEEEEECHHHHHHHT-CGG-GCSTTCCEEC---CHHHHH
T ss_pred ccCCCCEEEEEECChHHhc---CCHHHHHHHHHHHcCCCeEEEEEeCChHHhhhhc-chh-hhhhhhhhcC---CHHHHH
Confidence 3345789999999999443 4566999999999999999998754432110000 000 0000111122 257899
Q ss_pred HHHhhcCCeEEEecc
Q 026036 222 TSCENAGLEVKHLGS 236 (244)
Q Consensus 222 ~~l~~~Gf~v~~~~~ 236 (244)
++++++||++.++..
T Consensus 238 ~ll~~aGf~~~~~~~ 252 (416)
T 4e2x_A 238 GMAQRCGFELVDVQR 252 (416)
T ss_dssp HHHHHTTEEEEEEEE
T ss_pred HHHHHcCCEEEEEEE
Confidence 999999999887754
|
| >2r3s_A Uncharacterized protein; methyltransferase domain, structural genomics, joint center structural genomics, JCSG, protein structure initiative; HET: MSE; 2.15A {Nostoc punctiforme} | Back alignment and structure |
|---|
Probab=99.62 E-value=7.7e-15 Score=123.33 Aligned_cols=155 Identities=14% Similarity=0.143 Sum_probs=103.6
Q ss_pred ccCCeEEEeCCCCcHHHHHHHHhC-CCeEEEEeCChHHHHHHHHHhHHhcCCCCCcceEeeecCCCCCCCCCCccEEEEc
Q 026036 76 IERRRCIELGSGTGALAIFLRKAM-NLDITTSDYNDQEIEDNIAYNSTTNGITPALPHIKHSWGDAFPIPNPDWDLILAS 154 (244)
Q Consensus 76 ~~~~~VLdlG~G~G~~~~~~a~~~-~~~v~~~D~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fD~I~~~ 154 (244)
.++.+|||+|||+|..+..+++.. +.+++++|++ .++ +.++++....++..++..+..+..+. +.+ ..||+|++.
T Consensus 164 ~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~~-~~~-~~a~~~~~~~~~~~~v~~~~~d~~~~-~~~-~~~D~v~~~ 239 (335)
T 2r3s_A 164 IEPLKVLDISASHGLFGIAVAQHNPNAEIFGVDWA-SVL-EVAKENARIQGVASRYHTIAGSAFEV-DYG-NDYDLVLLP 239 (335)
T ss_dssp CCCSEEEEETCTTCHHHHHHHHHCTTCEEEEEECH-HHH-HHHHHHHHHHTCGGGEEEEESCTTTS-CCC-SCEEEEEEE
T ss_pred CCCCEEEEECCCcCHHHHHHHHHCCCCeEEEEecH-HHH-HHHHHHHHhcCCCcceEEEecccccC-CCC-CCCcEEEEc
Confidence 567899999999999999998876 6799999999 877 78888777666644455554444332 222 349999999
Q ss_pred ccccCCcChHHHHHHHHHHHHhcCCCCceEeecccccCCCCC-CCCC-CCeEEEeeeeccCccchhhHHHHHhhcCCeEE
Q 026036 155 DILLYVKQYSNLIKSLSVLLKSYKPKDSQVGHLTKNEQGEGT-EGLP-WPAFLMSWRRRIGKEDETIFFTSCENAGLEVK 232 (244)
Q Consensus 155 ~~l~~~~~~~~l~~~l~~~~~~lk~gG~~~~~~~~~~~~~~~-~~~~-~~~~~~~~~~~~~~~~~~~~~~~l~~~Gf~v~ 232 (244)
+++ ++...++..+.++++.+.|+|||++++........... .... ...+...........+.+++.++++++||+++
T Consensus 240 ~~l-~~~~~~~~~~~l~~~~~~L~pgG~l~i~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~~ll~~aGf~~~ 318 (335)
T 2r3s_A 240 NFL-HHFDVATCEQLLRKIKTALAVEGKVIVFDFIPNSDRITPPDAAAFSLVMLATTPNGDAYTFAEYESMFSNAGFSHS 318 (335)
T ss_dssp SCG-GGSCHHHHHHHHHHHHHHEEEEEEEEEEECCCCTTSSCSHHHHHHHHHHHHHSSSCCCCCHHHHHHHHHHTTCSEE
T ss_pred chh-ccCCHHHHHHHHHHHHHhCCCCcEEEEEeecCCCCcCCchHHHHHHHHHHeeCCCCCcCCHHHHHHHHHHCCCCee
Confidence 999 44445667799999999999999988875443321100 0000 00000000001111235899999999999988
Q ss_pred Eec
Q 026036 233 HLG 235 (244)
Q Consensus 233 ~~~ 235 (244)
++.
T Consensus 319 ~~~ 321 (335)
T 2r3s_A 319 QLH 321 (335)
T ss_dssp EEE
T ss_pred eEE
Confidence 764
|
| >3mcz_A O-methyltransferase; adomet_mtases, S-adenosylmethionine-dependent methyltransfer structural genomics, PSI-2; HET: MSE; 1.90A {Burkholderia thailandensis} | Back alignment and structure |
|---|
Probab=99.62 E-value=1.3e-15 Score=129.04 Aligned_cols=160 Identities=13% Similarity=0.052 Sum_probs=105.4
Q ss_pred ccCccc-CCeEEEeCCCCcHHHHHHHHhC-CCeEEEEeCChHHHHHHHHHhHHhcCCCCCcceEeeecCCCCCCCCCCcc
Q 026036 72 HREWIE-RRRCIELGSGTGALAIFLRKAM-NLDITTSDYNDQEIEDNIAYNSTTNGITPALPHIKHSWGDAFPIPNPDWD 149 (244)
Q Consensus 72 ~~~~~~-~~~VLdlG~G~G~~~~~~a~~~-~~~v~~~D~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fD 149 (244)
.....+ +.+|||||||+|..+..+++.. ..+++++|+ +.++ +.++++....++..++..+..+..+..++..+.||
T Consensus 173 ~~~~~~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~-~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~D 250 (352)
T 3mcz_A 173 ELGVFARARTVIDLAGGHGTYLAQVLRRHPQLTGQIWDL-PTTR-DAARKTIHAHDLGGRVEFFEKNLLDARNFEGGAAD 250 (352)
T ss_dssp TCGGGTTCCEEEEETCTTCHHHHHHHHHCTTCEEEEEEC-GGGH-HHHHHHHHHTTCGGGEEEEECCTTCGGGGTTCCEE
T ss_pred hCCCcCCCCEEEEeCCCcCHHHHHHHHhCCCCeEEEEEC-HHHH-HHHHHHHHhcCCCCceEEEeCCcccCcccCCCCcc
Confidence 334445 7899999999999999998876 678999999 6666 77777777666644445544444332111345699
Q ss_pred EEEEcccccCCcChHHHHHHHHHHHHhcCCCCceEeecccccCCCC-CCCCC-CCeEEEeeeeccCccchhhHHHHHhhc
Q 026036 150 LILASDILLYVKQYSNLIKSLSVLLKSYKPKDSQVGHLTKNEQGEG-TEGLP-WPAFLMSWRRRIGKEDETIFFTSCENA 227 (244)
Q Consensus 150 ~I~~~~~l~~~~~~~~l~~~l~~~~~~lk~gG~~~~~~~~~~~~~~-~~~~~-~~~~~~~~~~~~~~~~~~~~~~~l~~~ 227 (244)
+|++.+++ ++...+...+.++++++.|+|||++++.......... ..... ....+..........+.+++.++++++
T Consensus 251 ~v~~~~vl-h~~~~~~~~~~l~~~~~~L~pgG~l~i~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~e~~~ll~~a 329 (352)
T 3mcz_A 251 VVMLNDCL-HYFDAREAREVIGHAAGLVKPGGALLILTMTMNDDRVTPALSADFSLHMMVNTNHGELHPTPWIAGVVRDA 329 (352)
T ss_dssp EEEEESCG-GGSCHHHHHHHHHHHHHTEEEEEEEEEEEECCCTTSSSSHHHHHHHHHHHHHSTTCCCCCHHHHHHHHHHT
T ss_pred EEEEeccc-ccCCHHHHHHHHHHHHHHcCCCCEEEEEEeccCCCCCCCchHHHhhHHHHhhCCCCCcCCHHHHHHHHHHC
Confidence 99999999 4445566789999999999999999988544433211 00000 000000000000112357899999999
Q ss_pred CCeEEEe
Q 026036 228 GLEVKHL 234 (244)
Q Consensus 228 Gf~v~~~ 234 (244)
||++++.
T Consensus 330 Gf~~~~~ 336 (352)
T 3mcz_A 330 GLAVGER 336 (352)
T ss_dssp TCEEEEE
T ss_pred CCceeee
Confidence 9998874
|
| >3g89_A Ribosomal RNA small subunit methyltransferase G; 16S rRNA methyltransferase, translation, cytoplasm, rRNA processing; HET: HIC SAM AMP; 1.50A {Thermus thermophilus} PDB: 3g88_A* 3g8a_A* 3g8b_A* | Back alignment and structure |
|---|
Probab=99.62 E-value=1.7e-15 Score=122.44 Aligned_cols=129 Identities=13% Similarity=0.075 Sum_probs=93.3
Q ss_pred ccCCeEEEeCCCCcHHHHHHHHhC-CCeEEEEeCChHHHHHHHHHhHHhcCCCCCcceEeeecCCCCC--CCCCCccEEE
Q 026036 76 IERRRCIELGSGTGALAIFLRKAM-NLDITTSDYNDQEIEDNIAYNSTTNGITPALPHIKHSWGDAFP--IPNPDWDLIL 152 (244)
Q Consensus 76 ~~~~~VLdlG~G~G~~~~~~a~~~-~~~v~~~D~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~fD~I~ 152 (244)
.++.+|||||||+|.+++.++... +.+|+++|+++.++ +.+++|+..+++++ +..+..+..+... ...++||+|+
T Consensus 79 ~~~~~vLDiG~G~G~~~i~la~~~~~~~v~~vD~s~~~~-~~a~~~~~~~~l~~-v~~~~~d~~~~~~~~~~~~~fD~I~ 156 (249)
T 3g89_A 79 QGPLRVLDLGTGAGFPGLPLKIVRPELELVLVDATRKKV-AFVERAIEVLGLKG-ARALWGRAEVLAREAGHREAYARAV 156 (249)
T ss_dssp CSSCEEEEETCTTTTTHHHHHHHCTTCEEEEEESCHHHH-HHHHHHHHHHTCSS-EEEEECCHHHHTTSTTTTTCEEEEE
T ss_pred CCCCEEEEEcCCCCHHHHHHHHHCCCCEEEEEECCHHHH-HHHHHHHHHhCCCc-eEEEECcHHHhhcccccCCCceEEE
Confidence 467899999999999999998875 67999999999997 88999988887742 4444433322111 2246899999
Q ss_pred EcccccCCcChHHHHHHHHHHHHhcCCCCceEeecccccCCCCCCCCCCCeEEEeeeeccCccchhhHHHHHhhcCCeEE
Q 026036 153 ASDILLYVKQYSNLIKSLSVLLKSYKPKDSQVGHLTKNEQGEGTEGLPWPAFLMSWRRRIGKEDETIFFTSCENAGLEVK 232 (244)
Q Consensus 153 ~~~~l~~~~~~~~l~~~l~~~~~~lk~gG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gf~v~ 232 (244)
+..+- ++...++.+.++|||||++++.. .....+....+.+.++..||+++
T Consensus 157 s~a~~-------~~~~ll~~~~~~LkpgG~l~~~~----------------------g~~~~~e~~~~~~~l~~~G~~~~ 207 (249)
T 3g89_A 157 ARAVA-------PLCVLSELLLPFLEVGGAAVAMK----------------------GPRVEEELAPLPPALERLGGRLG 207 (249)
T ss_dssp EESSC-------CHHHHHHHHGGGEEEEEEEEEEE----------------------CSCCHHHHTTHHHHHHHHTEEEE
T ss_pred ECCcC-------CHHHHHHHHHHHcCCCeEEEEEe----------------------CCCcHHHHHHHHHHHHHcCCeEE
Confidence 96542 23488889999999999877641 00111123566778888999988
Q ss_pred Eec
Q 026036 233 HLG 235 (244)
Q Consensus 233 ~~~ 235 (244)
++.
T Consensus 208 ~~~ 210 (249)
T 3g89_A 208 EVL 210 (249)
T ss_dssp EEE
T ss_pred EEE
Confidence 764
|
| >1qzz_A RDMB, aclacinomycin-10-hydroxylase; anthracycline, methyltransferase, polyketide, tailoring enzymes, structural proteomics in E spine; HET: SAM; 2.10A {Streptomyces purpurascens} SCOP: a.4.5.29 c.66.1.12 PDB: 1r00_A* 1xds_A* 1xdu_A* | Back alignment and structure |
|---|
Probab=99.62 E-value=1e-15 Score=130.70 Aligned_cols=155 Identities=14% Similarity=0.178 Sum_probs=103.7
Q ss_pred CcccCCeEEEeCCCCcHHHHHHHHhC-CCeEEEEeCChHHHHHHHHHhHHhcCCCCCcceEeeecCCCCCCCCCCccEEE
Q 026036 74 EWIERRRCIELGSGTGALAIFLRKAM-NLDITTSDYNDQEIEDNIAYNSTTNGITPALPHIKHSWGDAFPIPNPDWDLIL 152 (244)
Q Consensus 74 ~~~~~~~VLdlG~G~G~~~~~~a~~~-~~~v~~~D~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fD~I~ 152 (244)
...++.+|||+|||+|.++..+++.. +.+++++|+ +.++ +.++++...+++..++..+..+..+.++ ..||+|+
T Consensus 179 ~~~~~~~vlDvG~G~G~~~~~l~~~~~~~~~~~~D~-~~~~-~~a~~~~~~~~~~~~v~~~~~d~~~~~~---~~~D~v~ 253 (374)
T 1qzz_A 179 DWSAVRHVLDVGGGNGGMLAAIALRAPHLRGTLVEL-AGPA-ERARRRFADAGLADRVTVAEGDFFKPLP---VTADVVL 253 (374)
T ss_dssp CCTTCCEEEEETCTTSHHHHHHHHHCTTCEEEEEEC-HHHH-HHHHHHHHHTTCTTTEEEEECCTTSCCS---CCEEEEE
T ss_pred CCCCCCEEEEECCCcCHHHHHHHHHCCCCEEEEEeC-HHHH-HHHHHHHHhcCCCCceEEEeCCCCCcCC---CCCCEEE
Confidence 34567899999999999999998886 679999999 8887 8888888777765555665555443322 3499999
Q ss_pred EcccccCCcChHHHHHHHHHHHHhcCCCCceEeecc--cccCCCCCCCCC-CCeEEEe-eeeccCccchhhHHHHHhhcC
Q 026036 153 ASDILLYVKQYSNLIKSLSVLLKSYKPKDSQVGHLT--KNEQGEGTEGLP-WPAFLMS-WRRRIGKEDETIFFTSCENAG 228 (244)
Q Consensus 153 ~~~~l~~~~~~~~l~~~l~~~~~~lk~gG~~~~~~~--~~~~~~~~~~~~-~~~~~~~-~~~~~~~~~~~~~~~~l~~~G 228 (244)
++++++ +...+...+.++++.+.|||||++++... ............ ...+... ...+. .+.+++.++++++|
T Consensus 254 ~~~vl~-~~~~~~~~~~l~~~~~~L~pgG~l~i~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~ll~~aG 330 (374)
T 1qzz_A 254 LSFVLL-NWSDEDALTILRGCVRALEPGGRLLVLDRADVEGDGADRFFSTLLDLRMLTFMGGRV--RTRDEVVDLAGSAG 330 (374)
T ss_dssp EESCGG-GSCHHHHHHHHHHHHHHEEEEEEEEEEECCH-------HHHHHHHHHHHHHHHSCCC--CCHHHHHHHHHTTT
T ss_pred Eecccc-CCCHHHHHHHHHHHHHhcCCCcEEEEEechhhcCCCCCcchhhhcchHHHHhCCCcC--CCHHHHHHHHHHCC
Confidence 999994 44445556899999999999999988754 221110000000 0000000 00111 23588999999999
Q ss_pred CeEEEecc
Q 026036 229 LEVKHLGS 236 (244)
Q Consensus 229 f~v~~~~~ 236 (244)
|+++++..
T Consensus 331 f~~~~~~~ 338 (374)
T 1qzz_A 331 LALASERT 338 (374)
T ss_dssp EEEEEEEE
T ss_pred CceEEEEE
Confidence 99887653
|
| >1x19_A CRTF-related protein; methyltransferase, bacteriochllochlorophyll, BCHU, SAM, SAH, adenosylmethyonine, S-adenosylhomocysteine, ADO-Met; 2.27A {Chlorobium tepidum} PDB: 1x1a_A* 1x1b_A* 1x1c_A* 1x1d_A* | Back alignment and structure |
|---|
Probab=99.61 E-value=7.7e-15 Score=124.72 Aligned_cols=162 Identities=14% Similarity=0.145 Sum_probs=106.6
Q ss_pred HhhccCcccCCeEEEeCCCCcHHHHHHHHhC-CCeEEEEeCChHHHHHHHHHhHHhcCCCCCcceEeeecCCCCCCCCCC
Q 026036 69 LMHHREWIERRRCIELGSGTGALAIFLRKAM-NLDITTSDYNDQEIEDNIAYNSTTNGITPALPHIKHSWGDAFPIPNPD 147 (244)
Q Consensus 69 ~~~~~~~~~~~~VLdlG~G~G~~~~~~a~~~-~~~v~~~D~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 147 (244)
+.......++.+|||||||+|..+..+++.. +.+++++|+ +.++ +.++++....+++.++..+..+..+. +. +.
T Consensus 182 l~~~~~~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~-~~a~~~~~~~~~~~~v~~~~~d~~~~-~~--~~ 256 (359)
T 1x19_A 182 LLEEAKLDGVKKMIDVGGGIGDISAAMLKHFPELDSTILNL-PGAI-DLVNENAAEKGVADRMRGIAVDIYKE-SY--PE 256 (359)
T ss_dssp HHHHCCCTTCCEEEEESCTTCHHHHHHHHHCTTCEEEEEEC-GGGH-HHHHHHHHHTTCTTTEEEEECCTTTS-CC--CC
T ss_pred HHHhcCCCCCCEEEEECCcccHHHHHHHHHCCCCeEEEEec-HHHH-HHHHHHHHhcCCCCCEEEEeCccccC-CC--CC
Confidence 3333345577899999999999999998886 679999999 8887 78888877776655555555444332 22 33
Q ss_pred ccEEEEcccccCCcChHHHHHHHHHHHHhcCCCCceEeecccccCCCCCCCCCCCeEE--Eeeeec-cCccchhhHHHHH
Q 026036 148 WDLILASDILLYVKQYSNLIKSLSVLLKSYKPKDSQVGHLTKNEQGEGTEGLPWPAFL--MSWRRR-IGKEDETIFFTSC 224 (244)
Q Consensus 148 fD~I~~~~~l~~~~~~~~l~~~l~~~~~~lk~gG~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~-~~~~~~~~~~~~l 224 (244)
+|+|++..++++ ...+...+.++++.+.|||||++++................-.++ ...... ....+.+++.+++
T Consensus 257 ~D~v~~~~vlh~-~~d~~~~~~l~~~~~~L~pgG~l~i~e~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~t~~e~~~ll 335 (359)
T 1x19_A 257 ADAVLFCRILYS-ANEQLSTIMCKKAFDAMRSGGRLLILDMVIDDPENPNFDYLSHYILGAGMPFSVLGFKEQARYKEIL 335 (359)
T ss_dssp CSEEEEESCGGG-SCHHHHHHHHHHHHTTCCTTCEEEEEEECCCCTTSCCHHHHHHHGGGGGSSCCCCCCCCGGGHHHHH
T ss_pred CCEEEEechhcc-CCHHHHHHHHHHHHHhcCCCCEEEEEecccCCCCCchHHHHHHHHHhcCCCCcccCCCCHHHHHHHH
Confidence 599999999944 344457799999999999999998875443322100000000000 000000 0002358999999
Q ss_pred hhcCCeEEEecc
Q 026036 225 ENAGLEVKHLGS 236 (244)
Q Consensus 225 ~~~Gf~v~~~~~ 236 (244)
+++||+++++..
T Consensus 336 ~~aGf~~v~~~~ 347 (359)
T 1x19_A 336 ESLGYKDVTMVR 347 (359)
T ss_dssp HHHTCEEEEEEE
T ss_pred HHCCCceEEEEe
Confidence 999999887654
|
| >3bgv_A MRNA CAP guanine-N7 methyltransferase; alternative splicing, mRNA capping, mRNA processing, nucleus, phosphoprotein, RNA-binding; HET: SAH; 2.30A {Homo sapiens} PDB: 3epp_A* | Back alignment and structure |
|---|
Probab=99.61 E-value=1.2e-14 Score=121.26 Aligned_cols=112 Identities=13% Similarity=0.158 Sum_probs=81.3
Q ss_pred cCCeEEEeCCCCcHHHHHHHHhCCCeEEEEeCChHHHHHHHHHhHHhcC------CCCCcceEeeecCCCC---CC--CC
Q 026036 77 ERRRCIELGSGTGALAIFLRKAMNLDITTSDYNDQEIEDNIAYNSTTNG------ITPALPHIKHSWGDAF---PI--PN 145 (244)
Q Consensus 77 ~~~~VLdlG~G~G~~~~~~a~~~~~~v~~~D~~~~~l~~~~~~~~~~~~------~~~~~~~~~~~~~~~~---~~--~~ 145 (244)
++.+|||+|||+|..+..++.....+|+++|+++.++ +.++++..... ...++..+..+..+.. ++ ..
T Consensus 34 ~~~~VLDlGcG~G~~~~~l~~~~~~~v~gvD~s~~~l-~~a~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~ 112 (313)
T 3bgv_A 34 RDITVLDLGCGKGGDLLKWKKGRINKLVCTDIADVSV-KQCQQRYEDMKNRRDSEYIFSAEFITADSSKELLIDKFRDPQ 112 (313)
T ss_dssp -CCEEEEETCTTTTTHHHHHHTTCSEEEEEESCHHHH-HHHHHHHHHHHSSSCC-CCCEEEEEECCTTTSCSTTTCSSTT
T ss_pred CCCEEEEECCCCcHHHHHHHhcCCCEEEEEeCCHHHH-HHHHHHHHHhhhcccccccceEEEEEecccccchhhhcccCC
Confidence 6779999999999999988876678999999999987 66666554321 1112333444433321 12 23
Q ss_pred CCccEEEEcccccCC-cChHHHHHHHHHHHHhcCCCCceEeeccc
Q 026036 146 PDWDLILASDILLYV-KQYSNLIKSLSVLLKSYKPKDSQVGHLTK 189 (244)
Q Consensus 146 ~~fD~I~~~~~l~~~-~~~~~l~~~l~~~~~~lk~gG~~~~~~~~ 189 (244)
++||+|+++.++++. .+.++...+++++.++|||||.+++.++.
T Consensus 113 ~~fD~V~~~~~l~~~~~~~~~~~~~l~~~~~~LkpgG~li~~~~~ 157 (313)
T 3bgv_A 113 MCFDICSCQFVCHYSFESYEQADMMLRNACERLSPGGYFIGTTPN 157 (313)
T ss_dssp CCEEEEEEETCGGGGGGSHHHHHHHHHHHHTTEEEEEEEEEEEEC
T ss_pred CCEEEEEEecchhhccCCHHHHHHHHHHHHHHhCCCcEEEEecCC
Confidence 489999999998443 45567789999999999999999988554
|
| >2h00_A Methyltransferase 10 domain containing protein; structural genomics, structural genomics consortium, SGC; HET: SAH; 2.00A {Homo sapiens} SCOP: c.66.1.54 | Back alignment and structure |
|---|
Probab=99.61 E-value=1.2e-15 Score=123.55 Aligned_cols=170 Identities=9% Similarity=0.043 Sum_probs=100.4
Q ss_pred hHHHHHHHHhhccCc--ccCCeEEEeCCCCcHHHHHHHHhC-CCeEEEEeCChHHHHHHHHHhHHhcCCCCCcceEeeec
Q 026036 61 GTFSFAEWLMHHREW--IERRRCIELGSGTGALAIFLRKAM-NLDITTSDYNDQEIEDNIAYNSTTNGITPALPHIKHSW 137 (244)
Q Consensus 61 ~~~~l~~~~~~~~~~--~~~~~VLdlG~G~G~~~~~~a~~~-~~~v~~~D~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~ 137 (244)
....+...+...... .++.+|||+|||+|.+++.++... +.+|+++|+++.++ +.+++|+..++++.++..+..+.
T Consensus 47 ~~~~~~~~~~~~~~~~~~~~~~vLDlG~G~G~~~~~la~~~~~~~v~gvD~s~~~~-~~a~~~~~~~~~~~~v~~~~~d~ 125 (254)
T 2h00_A 47 NYIHWVEDLIGHQDSDKSTLRRGIDIGTGASCIYPLLGATLNGWYFLATEVDDMCF-NYAKKNVEQNNLSDLIKVVKVPQ 125 (254)
T ss_dssp HHHHHHHHHHCCCCGGGCCCCEEEEESCTTTTHHHHHHHHHHCCEEEEEESCHHHH-HHHHHHHHHTTCTTTEEEEECCT
T ss_pred HHHHHHHHHHhhccccCCCCCEEEEeCCChhHHHHHHHHhCCCCeEEEEECCHHHH-HHHHHHHHHcCCCccEEEEEcch
Confidence 344455544443322 257799999999999998888764 68999999999997 88999998888765566655543
Q ss_pred CCC-C-CCC---CCCccEEEEcccccCCc-C-----------hHHHHHHHHHHHHhcCCCCceEeecccccCCCCCCCCC
Q 026036 138 GDA-F-PIP---NPDWDLILASDILLYVK-Q-----------YSNLIKSLSVLLKSYKPKDSQVGHLTKNEQGEGTEGLP 200 (244)
Q Consensus 138 ~~~-~-~~~---~~~fD~I~~~~~l~~~~-~-----------~~~l~~~l~~~~~~lk~gG~~~~~~~~~~~~~~~~~~~ 200 (244)
.+. . +.. +++||+|+++.+++... . ..+....+..++++|||||.+.+......... .....
T Consensus 126 ~~~~~~~~~~~~~~~fD~i~~npp~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~LkpgG~l~~~~~~~~~~~-~~l~~ 204 (254)
T 2h00_A 126 KTLLMDALKEESEIIYDFCMCNPPFFANQLEAKGVNSRNPRRPPPSSVNTGGITEIMAEGGELEFVKRIIHDSL-QLKKR 204 (254)
T ss_dssp TCSSTTTSTTCCSCCBSEEEECCCCC-------------------------CTTTTHHHHTHHHHHHHHHHHHH-HHGGG
T ss_pred hhhhhhhhhcccCCcccEEEECCCCccCcchhcccccccccccCCHHHHhhhHHHHEecCCEEEEEHHHHHHHH-hcccc
Confidence 331 1 222 25899999988864322 0 01122456778899999998877622111100 00000
Q ss_pred CCeEEEeeeeccCccchhhHHHHHhhcCCeEEEec
Q 026036 201 WPAFLMSWRRRIGKEDETIFFTSCENAGLEVKHLG 235 (244)
Q Consensus 201 ~~~~~~~~~~~~~~~~~~~~~~~l~~~Gf~v~~~~ 235 (244)
. -+......... ....+.++++++||+.+++.
T Consensus 205 ~-g~~~~~~~~~~--~~~~~~~~l~~~Gf~~v~~~ 236 (254)
T 2h00_A 205 L-RWYSCMLGKKC--SLAPLKEELRIQGVPKVTYT 236 (254)
T ss_dssp B-SCEEEEESSTT--SHHHHHHHHHHTTCSEEEEE
T ss_pred e-EEEEECCCChh--HHHHHHHHHHHcCCCceEEE
Confidence 0 12221111111 13678889999999766543
|
| >2ip2_A Probable phenazine-specific methyltransferase; pyocyanin, phenazine-1-carboxy PHZM; 1.80A {Pseudomonas aeruginosa} | Back alignment and structure |
|---|
Probab=99.61 E-value=1.5e-15 Score=127.84 Aligned_cols=150 Identities=13% Similarity=0.069 Sum_probs=100.5
Q ss_pred CeEEEeCCCCcHHHHHHHHhC-CCeEEEEeCChHHHHHHHHHhHHhcCCCCCcceEeeecCCCCCCCCCCccEEEEcccc
Q 026036 79 RRCIELGSGTGALAIFLRKAM-NLDITTSDYNDQEIEDNIAYNSTTNGITPALPHIKHSWGDAFPIPNPDWDLILASDIL 157 (244)
Q Consensus 79 ~~VLdlG~G~G~~~~~~a~~~-~~~v~~~D~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fD~I~~~~~l 157 (244)
.+|||+|||+|..+..+++.. +.+++++|+ +.++ +.++++....++..++..+..+..+. . .++||+|++.+++
T Consensus 169 ~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~-~~a~~~~~~~~~~~~v~~~~~d~~~~--~-~~~~D~v~~~~vl 243 (334)
T 2ip2_A 169 RSFVDVGGGSGELTKAILQAEPSARGVMLDR-EGSL-GVARDNLSSLLAGERVSLVGGDMLQE--V-PSNGDIYLLSRII 243 (334)
T ss_dssp CEEEEETCTTCHHHHHHHHHCTTCEEEEEEC-TTCT-HHHHHHTHHHHHTTSEEEEESCTTTC--C-CSSCSEEEEESCG
T ss_pred CEEEEeCCCchHHHHHHHHHCCCCEEEEeCc-HHHH-HHHHHHHhhcCCCCcEEEecCCCCCC--C-CCCCCEEEEchhc
Confidence 899999999999999998876 678999999 8776 77777665544444455555554442 2 2579999999999
Q ss_pred cCCcChHHHHHHHHHHHHhcCCCCceEeecccccCCCCCCCCC-CCeEEEeeeeccCccchhhHHHHHhhcCCeEEEec
Q 026036 158 LYVKQYSNLIKSLSVLLKSYKPKDSQVGHLTKNEQGEGTEGLP-WPAFLMSWRRRIGKEDETIFFTSCENAGLEVKHLG 235 (244)
Q Consensus 158 ~~~~~~~~l~~~l~~~~~~lk~gG~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~l~~~Gf~v~~~~ 235 (244)
++ ...+...+.++++++.|+|||++++............... ....+.... .....+.+++.++++++||+++++.
T Consensus 244 ~~-~~~~~~~~~l~~~~~~L~pgG~l~i~e~~~~~~~~~~~~~~~~~~~~~~~-~~~~~t~~e~~~ll~~aGf~~~~~~ 320 (334)
T 2ip2_A 244 GD-LDEAASLRLLGNCREAMAGDGRVVVIERTISASEPSPMSVLWDVHLFMAC-AGRHRTTEEVVDLLGRGGFAVERIV 320 (334)
T ss_dssp GG-CCHHHHHHHHHHHHHHSCTTCEEEEEECCBCSSSCCHHHHHHHHHHHHHH-SCCCCBHHHHHHHHHHTTEEEEEEE
T ss_pred cC-CCHHHHHHHHHHHHHhcCCCCEEEEEEeccCCCCCcchhHHhhhHhHhhC-CCcCCCHHHHHHHHHHCCCceeEEE
Confidence 43 3455667999999999999999998844432211100000 000000000 0011235899999999999988764
|
| >3eey_A Putative rRNA methylase; rRNA methylation, S-adenosyl-methionine, structural genomics structure initiative, PSI; HET: SAM; 2.20A {Clostridium thermocellum atcc 27405} | Back alignment and structure |
|---|
Probab=99.61 E-value=1.1e-15 Score=118.79 Aligned_cols=112 Identities=15% Similarity=0.074 Sum_probs=82.8
Q ss_pred cccCCeEEEeCCCCcHHHHHHHHhC--CCeEEEEeCChHHHHHHHHHhHHhcCCCCCcceEeeecCCCCCCCCCCccEEE
Q 026036 75 WIERRRCIELGSGTGALAIFLRKAM--NLDITTSDYNDQEIEDNIAYNSTTNGITPALPHIKHSWGDAFPIPNPDWDLIL 152 (244)
Q Consensus 75 ~~~~~~VLdlG~G~G~~~~~~a~~~--~~~v~~~D~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fD~I~ 152 (244)
..++.+|||+|||+|..+..+++.. ..+|+++|+++.++ +.++++...+++..++..+..+..+......++||+|+
T Consensus 20 ~~~~~~vLDlGcG~G~~~~~l~~~~~~~~~v~~vD~s~~~~-~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~fD~v~ 98 (197)
T 3eey_A 20 VKEGDTVVDATCGNGNDTAFLASLVGENGRVFGFDIQDKAI-ANTTKKLTDLNLIDRVTLIKDGHQNMDKYIDCPVKAVM 98 (197)
T ss_dssp CCTTCEEEESCCTTSHHHHHHHHHHCTTCEEEEECSCHHHH-HHHHHHHHHTTCGGGEEEECSCGGGGGGTCCSCEEEEE
T ss_pred CCCCCEEEEcCCCCCHHHHHHHHHhCCCCEEEEEECCHHHH-HHHHHHHHHcCCCCCeEEEECCHHHHhhhccCCceEEE
Confidence 3467899999999999999998873 46999999999987 88888888776644444444443222224457899999
Q ss_pred EcccccCC------cChHHHHHHHHHHHHhcCCCCceEeec
Q 026036 153 ASDILLYV------KQYSNLIKSLSVLLKSYKPKDSQVGHL 187 (244)
Q Consensus 153 ~~~~l~~~------~~~~~l~~~l~~~~~~lk~gG~~~~~~ 187 (244)
++.+++.. .......+.++++.+.|||||++++..
T Consensus 99 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~Lk~gG~l~~~~ 139 (197)
T 3eey_A 99 FNLGYLPSGDHSISTRPETTIQALSKAMELLVTGGIITVVI 139 (197)
T ss_dssp EEESBCTTSCTTCBCCHHHHHHHHHHHHHHEEEEEEEEEEE
T ss_pred EcCCcccCcccccccCcccHHHHHHHHHHhCcCCCEEEEEE
Confidence 98765211 122345579999999999999988763
|
| >3gnl_A Uncharacterized protein, DUF633, LMOF2365_1472; structural genomics, PSI-2, protein structure initiative; 1.50A {Listeria monocytogenes str} | Back alignment and structure |
|---|
Probab=99.61 E-value=1e-14 Score=116.50 Aligned_cols=125 Identities=12% Similarity=0.037 Sum_probs=94.6
Q ss_pred ccCCeEEEeCCCCcHHHHHHHHhC-CCeEEEEeCChHHHHHHHHHhHHhcCCCCCcceEeeecCCCCCCCCCCccEEEEc
Q 026036 76 IERRRCIELGSGTGALAIFLRKAM-NLDITTSDYNDQEIEDNIAYNSTTNGITPALPHIKHSWGDAFPIPNPDWDLILAS 154 (244)
Q Consensus 76 ~~~~~VLdlG~G~G~~~~~~a~~~-~~~v~~~D~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fD~I~~~ 154 (244)
.++.+|||+|||+|.+++.+++.+ ..+|+++|+++.++ +.+++|+..+++.+++..+..+..+... ...+||+|+..
T Consensus 20 ~~g~~VlDIGtGsG~l~i~la~~~~~~~V~avDi~~~al-~~A~~N~~~~gl~~~I~v~~gD~l~~~~-~~~~~D~Ivia 97 (244)
T 3gnl_A 20 TKNERIADIGSDHAYLPCFAVKNQTASFAIAGEVVDGPF-QSAQKQVRSSGLTEQIDVRKGNGLAVIE-KKDAIDTIVIA 97 (244)
T ss_dssp CSSEEEEEETCSTTHHHHHHHHTTSEEEEEEEESSHHHH-HHHHHHHHHTTCTTTEEEEECSGGGGCC-GGGCCCEEEEE
T ss_pred CCCCEEEEECCccHHHHHHHHHhCCCCEEEEEECCHHHH-HHHHHHHHHcCCCceEEEEecchhhccC-ccccccEEEEe
Confidence 367899999999999999999886 45899999999997 8999999999986555554433332221 12269999886
Q ss_pred ccccCCcChHHHHHHHHHHHHhcCCCCceEeecccccCCCCCCCCCCCeEEEeeeeccCccchhhHHHHHhhcCCeEEE
Q 026036 155 DILLYVKQYSNLIKSLSVLLKSYKPKDSQVGHLTKNEQGEGTEGLPWPAFLMSWRRRIGKEDETIFFTSCENAGLEVKH 233 (244)
Q Consensus 155 ~~l~~~~~~~~l~~~l~~~~~~lk~gG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gf~v~~ 233 (244)
.+- ...+...+......|+++|++++. +... ...+.+.|.++||++.+
T Consensus 98 gmG-----g~lI~~IL~~~~~~L~~~~~lIlq-----------------------~~~~---~~~lr~~L~~~Gf~i~~ 145 (244)
T 3gnl_A 98 GMG-----GTLIRTILEEGAAKLAGVTKLILQ-----------------------PNIA---AWQLREWSEQNNWLITS 145 (244)
T ss_dssp EEC-----HHHHHHHHHHTGGGGTTCCEEEEE-----------------------ESSC---HHHHHHHHHHHTEEEEE
T ss_pred CCc-----hHHHHHHHHHHHHHhCCCCEEEEE-----------------------cCCC---hHHHHHHHHHCCCEEEE
Confidence 654 345668888888999999887765 1112 37888999999999744
|
| >1tw3_A COMT, carminomycin 4-O-methyltransferase; anthracycline, methylate, tailoring enzyme, polyketide, S-adenosyl-L-homocystein; HET: SAH ERT; 2.35A {Streptomyces peucetius} SCOP: a.4.5.29 c.66.1.12 PDB: 1tw2_A* | Back alignment and structure |
|---|
Probab=99.61 E-value=1.5e-15 Score=129.03 Aligned_cols=155 Identities=15% Similarity=0.240 Sum_probs=105.5
Q ss_pred CcccCCeEEEeCCCCcHHHHHHHHhC-CCeEEEEeCChHHHHHHHHHhHHhcCCCCCcceEeeecCCCCCCCCCCccEEE
Q 026036 74 EWIERRRCIELGSGTGALAIFLRKAM-NLDITTSDYNDQEIEDNIAYNSTTNGITPALPHIKHSWGDAFPIPNPDWDLIL 152 (244)
Q Consensus 74 ~~~~~~~VLdlG~G~G~~~~~~a~~~-~~~v~~~D~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fD~I~ 152 (244)
...++.+|||+|||+|..+..+++.. ..+++++|+ +.++ +.++++...+++..++..+..+..+.++ ..||+|+
T Consensus 180 ~~~~~~~vLDvG~G~G~~~~~l~~~~~~~~~~~~D~-~~~~-~~a~~~~~~~~~~~~v~~~~~d~~~~~~---~~~D~v~ 254 (360)
T 1tw3_A 180 DWTNVRHVLDVGGGKGGFAAAIARRAPHVSATVLEM-AGTV-DTARSYLKDEGLSDRVDVVEGDFFEPLP---RKADAII 254 (360)
T ss_dssp CCTTCSEEEEETCTTSHHHHHHHHHCTTCEEEEEEC-TTHH-HHHHHHHHHTTCTTTEEEEECCTTSCCS---SCEEEEE
T ss_pred CCccCcEEEEeCCcCcHHHHHHHHhCCCCEEEEecC-HHHH-HHHHHHHHhcCCCCceEEEeCCCCCCCC---CCccEEE
Confidence 34567899999999999999998876 578999999 7777 7888888777765556666555544322 3499999
Q ss_pred EcccccCCcChHHHHHHHHHHHHhcCCCCceEeeccc-ccCCCCCCCCC-CCeEE-EeeeeccCccchhhHHHHHhhcCC
Q 026036 153 ASDILLYVKQYSNLIKSLSVLLKSYKPKDSQVGHLTK-NEQGEGTEGLP-WPAFL-MSWRRRIGKEDETIFFTSCENAGL 229 (244)
Q Consensus 153 ~~~~l~~~~~~~~l~~~l~~~~~~lk~gG~~~~~~~~-~~~~~~~~~~~-~~~~~-~~~~~~~~~~~~~~~~~~l~~~Gf 229 (244)
+.++++ +...+...+.++++.+.|+|||++++.... ........... ...+. .....+. .+.+++.++++++||
T Consensus 255 ~~~vl~-~~~~~~~~~~l~~~~~~L~pgG~l~i~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~t~~e~~~ll~~aGf 331 (360)
T 1tw3_A 255 LSFVLL-NWPDHDAVRILTRCAEALEPGGRILIHERDDLHENSFNEQFTELDLRMLVFLGGAL--RTREKWDGLAASAGL 331 (360)
T ss_dssp EESCGG-GSCHHHHHHHHHHHHHTEEEEEEEEEEECCBCGGGCCSHHHHHHHHHHHHHHSCCC--CBHHHHHHHHHHTTE
T ss_pred Eccccc-CCCHHHHHHHHHHHHHhcCCCcEEEEEEEeccCCCCCcchhhhccHHHhhhcCCcC--CCHHHHHHHHHHCCC
Confidence 999994 344455568999999999999999987544 22211000000 00000 0000111 235899999999999
Q ss_pred eEEEecc
Q 026036 230 EVKHLGS 236 (244)
Q Consensus 230 ~v~~~~~ 236 (244)
+++++..
T Consensus 332 ~~~~~~~ 338 (360)
T 1tw3_A 332 VVEEVRQ 338 (360)
T ss_dssp EEEEEEE
T ss_pred eEEEEEe
Confidence 9887654
|
| >3r0q_C Probable protein arginine N-methyltransferase 4.2; arginine methyltransferase, methylation; HET: SAH; 2.61A {Arabidopsis thaliana} | Back alignment and structure |
|---|
Probab=99.61 E-value=3.3e-15 Score=127.77 Aligned_cols=121 Identities=17% Similarity=0.229 Sum_probs=93.5
Q ss_pred HHHHHHHHhhccCcccCCeEEEeCCCCcHHHHHHHHhCCCeEEEEeCChHHHHHHHHHhHHhcCCCCCcceEeeecCCCC
Q 026036 62 TFSFAEWLMHHREWIERRRCIELGSGTGALAIFLRKAMNLDITTSDYNDQEIEDNIAYNSTTNGITPALPHIKHSWGDAF 141 (244)
Q Consensus 62 ~~~l~~~~~~~~~~~~~~~VLdlG~G~G~~~~~~a~~~~~~v~~~D~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 141 (244)
...+.+++.......++.+|||||||+|.+++.+++.+..+|+|+|++ .++ +.+++++..+++..++..+..+..+ .
T Consensus 48 ~~~~~~~i~~~~~~~~~~~VLDlGcGtG~ls~~la~~g~~~V~gvD~s-~~~-~~a~~~~~~~~~~~~v~~~~~d~~~-~ 124 (376)
T 3r0q_C 48 MDAYFNAVFQNKHHFEGKTVLDVGTGSGILAIWSAQAGARKVYAVEAT-KMA-DHARALVKANNLDHIVEVIEGSVED-I 124 (376)
T ss_dssp HHHHHHHHHTTTTTTTTCEEEEESCTTTHHHHHHHHTTCSEEEEEESS-TTH-HHHHHHHHHTTCTTTEEEEESCGGG-C
T ss_pred HHHHHHHHHhccccCCCCEEEEeccCcCHHHHHHHhcCCCEEEEEccH-HHH-HHHHHHHHHcCCCCeEEEEECchhh-c
Confidence 344556666666677899999999999999999998866699999999 887 8888888888886666666555533 2
Q ss_pred CCCCCCccEEEEcccccCCcChHHHHHHHHHHHHhcCCCCceEee
Q 026036 142 PIPNPDWDLILASDILLYVKQYSNLIKSLSVLLKSYKPKDSQVGH 186 (244)
Q Consensus 142 ~~~~~~fD~I~~~~~l~~~~~~~~l~~~l~~~~~~lk~gG~~~~~ 186 (244)
+.+ ++||+|++..+.|.......+...++.+.+.|||||.+++.
T Consensus 125 ~~~-~~~D~Iv~~~~~~~l~~e~~~~~~l~~~~~~LkpgG~li~~ 168 (376)
T 3r0q_C 125 SLP-EKVDVIISEWMGYFLLRESMFDSVISARDRWLKPTGVMYPS 168 (376)
T ss_dssp CCS-SCEEEEEECCCBTTBTTTCTHHHHHHHHHHHEEEEEEEESS
T ss_pred CcC-CcceEEEEcChhhcccchHHHHHHHHHHHhhCCCCeEEEEe
Confidence 232 78999999776654443345668899999999999988765
|
| >2fhp_A Methylase, putative; alpha-beta-alpha sandwich, structural genomics, PSI, protein structure initiative; HET: MSE; 1.60A {Enterococcus faecalis} SCOP: c.66.1.46 | Back alignment and structure |
|---|
Probab=99.60 E-value=3.8e-16 Score=120.28 Aligned_cols=128 Identities=16% Similarity=0.087 Sum_probs=89.4
Q ss_pred eechHHHHHHHHhhcc-CcccCCeEEEeCCCCcHHHHHHHHhCCCeEEEEeCChHHHHHHHHHhHHhcCCCCCcceEeee
Q 026036 58 LWPGTFSFAEWLMHHR-EWIERRRCIELGSGTGALAIFLRKAMNLDITTSDYNDQEIEDNIAYNSTTNGITPALPHIKHS 136 (244)
Q Consensus 58 ~w~~~~~l~~~~~~~~-~~~~~~~VLdlG~G~G~~~~~~a~~~~~~v~~~D~~~~~l~~~~~~~~~~~~~~~~~~~~~~~ 136 (244)
..|....+.+.+.... ...++.+|||+|||+|.+++.++.....+|+++|+++.++ +.+++|...+++..++..+..+
T Consensus 24 ~rp~~~~~~~~~~~~l~~~~~~~~vLD~GcG~G~~~~~~~~~~~~~v~~vD~~~~~~-~~a~~~~~~~~~~~~~~~~~~d 102 (187)
T 2fhp_A 24 TRPTTDKVKESIFNMIGPYFDGGMALDLYSGSGGLAIEAVSRGMDKSICIEKNFAAL-KVIKENIAITKEPEKFEVRKMD 102 (187)
T ss_dssp SCCCCHHHHHHHHHHHCSCCSSCEEEETTCTTCHHHHHHHHTTCSEEEEEESCHHHH-HHHHHHHHHHTCGGGEEEEESC
T ss_pred cCcCHHHHHHHHHHHHHhhcCCCCEEEeCCccCHHHHHHHHcCCCEEEEEECCHHHH-HHHHHHHHHhCCCcceEEEECc
Confidence 3455666666665544 3357889999999999999988876567999999999987 8888888877764344444444
Q ss_pred cCCCCC---CCCCCccEEEEcccccCCcChHHHHHHHHHH--HHhcCCCCceEeecccc
Q 026036 137 WGDAFP---IPNPDWDLILASDILLYVKQYSNLIKSLSVL--LKSYKPKDSQVGHLTKN 190 (244)
Q Consensus 137 ~~~~~~---~~~~~fD~I~~~~~l~~~~~~~~l~~~l~~~--~~~lk~gG~~~~~~~~~ 190 (244)
+.+..+ ...++||+|+++.++ ...... ..++.+ .++|+|||.+++.+...
T Consensus 103 ~~~~~~~~~~~~~~fD~i~~~~~~-~~~~~~---~~~~~l~~~~~L~~gG~l~~~~~~~ 157 (187)
T 2fhp_A 103 ANRALEQFYEEKLQFDLVLLDPPY-AKQEIV---SQLEKMLERQLLTNEAVIVCETDKT 157 (187)
T ss_dssp HHHHHHHHHHTTCCEEEEEECCCG-GGCCHH---HHHHHHHHTTCEEEEEEEEEEEETT
T ss_pred HHHHHHHHHhcCCCCCEEEECCCC-CchhHH---HHHHHHHHhcccCCCCEEEEEeCCc
Confidence 332111 124689999998774 433334 455555 78899999988874443
|
| >1xdz_A Methyltransferase GIDB; MCSG, protein structure initiative, structural genomics, methyltransferase fold, PSI; 1.60A {Bacillus subtilis} SCOP: c.66.1.20 | Back alignment and structure |
|---|
Probab=99.60 E-value=2.9e-15 Score=120.34 Aligned_cols=128 Identities=14% Similarity=0.135 Sum_probs=91.6
Q ss_pred ccCCeEEEeCCCCcHHHHHHHHhC-CCeEEEEeCChHHHHHHHHHhHHhcCCCCCcceEeeecCCCCCC---CCCCccEE
Q 026036 76 IERRRCIELGSGTGALAIFLRKAM-NLDITTSDYNDQEIEDNIAYNSTTNGITPALPHIKHSWGDAFPI---PNPDWDLI 151 (244)
Q Consensus 76 ~~~~~VLdlG~G~G~~~~~~a~~~-~~~v~~~D~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~fD~I 151 (244)
.++.+|||+|||+|.+++.++... +.+|+++|+++.++ +.+++++..++++ ++..+..+..+ ++. ..++||+|
T Consensus 69 ~~~~~vLDiG~G~G~~~~~la~~~~~~~v~~vD~s~~~~-~~a~~~~~~~~~~-~v~~~~~d~~~-~~~~~~~~~~fD~V 145 (240)
T 1xdz_A 69 NQVNTICDVGAGAGFPSLPIKICFPHLHVTIVDSLNKRI-TFLEKLSEALQLE-NTTFCHDRAET-FGQRKDVRESYDIV 145 (240)
T ss_dssp GGCCEEEEECSSSCTTHHHHHHHCTTCEEEEEESCHHHH-HHHHHHHHHHTCS-SEEEEESCHHH-HTTCTTTTTCEEEE
T ss_pred CCCCEEEEecCCCCHHHHHHHHhCCCCEEEEEeCCHHHH-HHHHHHHHHcCCC-CEEEEeccHHH-hcccccccCCccEE
Confidence 467899999999999999998654 67999999999997 8888888877763 24444333322 222 14689999
Q ss_pred EEcccccCCcChHHHHHHHHHHHHhcCCCCceEeecccccCCCCCCCCCCCeEEEeeeeccCccchhhHHHHHhhcCCeE
Q 026036 152 LASDILLYVKQYSNLIKSLSVLLKSYKPKDSQVGHLTKNEQGEGTEGLPWPAFLMSWRRRIGKEDETIFFTSCENAGLEV 231 (244)
Q Consensus 152 ~~~~~l~~~~~~~~l~~~l~~~~~~lk~gG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gf~v 231 (244)
++..+ .++...++.+.+.|||||++++.. .... ......+.+.++..||++
T Consensus 146 ~~~~~-------~~~~~~l~~~~~~LkpgG~l~~~~---------------------g~~~-~~~~~~~~~~l~~~g~~~ 196 (240)
T 1xdz_A 146 TARAV-------ARLSVLSELCLPLVKKNGLFVALK---------------------AASA-EEELNAGKKAITTLGGEL 196 (240)
T ss_dssp EEECC-------SCHHHHHHHHGGGEEEEEEEEEEE---------------------CC-C-HHHHHHHHHHHHHTTEEE
T ss_pred EEecc-------CCHHHHHHHHHHhcCCCCEEEEEe---------------------CCCc-hHHHHHHHHHHHHcCCeE
Confidence 99663 234588999999999999877641 0001 111356778889999998
Q ss_pred EEec
Q 026036 232 KHLG 235 (244)
Q Consensus 232 ~~~~ 235 (244)
+.+.
T Consensus 197 ~~~~ 200 (240)
T 1xdz_A 197 ENIH 200 (240)
T ss_dssp EEEE
T ss_pred eEEE
Confidence 7664
|
| >1zx0_A Guanidinoacetate N-methyltransferase; structural genomics, structural genomics consortium; HET: SAH; 1.86A {Homo sapiens} PDB: 3orh_A* 1xcj_A* 1xcl_A* 1p1c_A* 1p1b_A* 1khh_A* | Back alignment and structure |
|---|
Probab=99.60 E-value=2.2e-16 Score=126.49 Aligned_cols=109 Identities=17% Similarity=0.102 Sum_probs=77.8
Q ss_pred ccCCeEEEeCCCCcHHHHHHHHhCCCeEEEEeCChHHHHHHHHHhHHhcCCCCCcceEeeecCCCC-CCCCCCccEEEE-
Q 026036 76 IERRRCIELGSGTGALAIFLRKAMNLDITTSDYNDQEIEDNIAYNSTTNGITPALPHIKHSWGDAF-PIPNPDWDLILA- 153 (244)
Q Consensus 76 ~~~~~VLdlG~G~G~~~~~~a~~~~~~v~~~D~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~fD~I~~- 153 (244)
.++.+|||||||+|.++..++.....+|+++|+|+.|+ +.++++...++. ++..+..++.+.. ++.+++||+|++
T Consensus 59 ~~~~~vLDiGcGtG~~~~~l~~~~~~~v~gvD~s~~~l-~~a~~~~~~~~~--~v~~~~~d~~~~~~~~~~~~fD~V~~d 135 (236)
T 1zx0_A 59 SKGGRVLEVGFGMAIAASKVQEAPIDEHWIIECNDGVF-QRLRDWAPRQTH--KVIPLKGLWEDVAPTLPDGHFDGILYD 135 (236)
T ss_dssp TTCEEEEEECCTTSHHHHHHHTSCEEEEEEEECCHHHH-HHHHHHGGGCSS--EEEEEESCHHHHGGGSCTTCEEEEEEC
T ss_pred CCCCeEEEEeccCCHHHHHHHhcCCCeEEEEcCCHHHH-HHHHHHHHhcCC--CeEEEecCHHHhhcccCCCceEEEEEC
Confidence 36789999999999999999765556899999999997 778777665442 2333333332211 455678999999
Q ss_pred ccccc-CCcChHHHHHHHHHHHHhcCCCCceEeec
Q 026036 154 SDILL-YVKQYSNLIKSLSVLLKSYKPKDSQVGHL 187 (244)
Q Consensus 154 ~~~l~-~~~~~~~l~~~l~~~~~~lk~gG~~~~~~ 187 (244)
...+. ..........++++++++|||||++++..
T Consensus 136 ~~~~~~~~~~~~~~~~~l~~~~r~LkpgG~l~~~~ 170 (236)
T 1zx0_A 136 TYPLSEETWHTHQFNFIKNHAFRLLKPGGVLTYCN 170 (236)
T ss_dssp CCCCBGGGTTTHHHHHHHHTHHHHEEEEEEEEECC
T ss_pred CcccchhhhhhhhHHHHHHHHHHhcCCCeEEEEEe
Confidence 44431 11223445577999999999999988763
|
| >2aot_A HMT, histamine N-methyltransferase; classic methyltransferase fold, protein-drug complex; HET: CSO 2PM SAH; 1.90A {Homo sapiens} SCOP: c.66.1.19 PDB: 1jqd_A* 2aou_A* 2aov_A* 2aox_A* 1jqe_A* 2aow_A* | Back alignment and structure |
|---|
Probab=99.60 E-value=6.2e-16 Score=127.83 Aligned_cols=148 Identities=13% Similarity=0.197 Sum_probs=89.9
Q ss_pred ccCCeEEEeCCCCcHHHHHH----HHhC-CCe--EEEEeCChHHHHHHHHHhHHhc-CCCCCcceEeeecC--CC--C--
Q 026036 76 IERRRCIELGSGTGALAIFL----RKAM-NLD--ITTSDYNDQEIEDNIAYNSTTN-GITPALPHIKHSWG--DA--F-- 141 (244)
Q Consensus 76 ~~~~~VLdlG~G~G~~~~~~----a~~~-~~~--v~~~D~~~~~l~~~~~~~~~~~-~~~~~~~~~~~~~~--~~--~-- 141 (244)
.++.+|||||||+|.++..+ +... ..+ ++++|+|++|+ +.++++.... ++ ..+.+.+. +. +
T Consensus 51 ~~~~~VLDiG~GtG~~~~~~l~~l~~~~~~~~v~~~~vD~S~~ml-~~a~~~~~~~~~~----~~v~~~~~~~~~~~~~~ 125 (292)
T 2aot_A 51 KSEIKILSIGGGAGEIDLQILSKVQAQYPGVCINNEVVEPSAEQI-AKYKELVAKTSNL----ENVKFAWHKETSSEYQS 125 (292)
T ss_dssp CSEEEEEEETCTTSHHHHHHHHHHHHHSTTCEEEEEEECSCHHHH-HHHHHHHHTCSSC----TTEEEEEECSCHHHHHH
T ss_pred CCCCeEEEEcCCCCHHHHHHHHHHHhhCCCceeeEEEEeCCHHHH-HHHHHHHHhccCC----CcceEEEEecchhhhhh
Confidence 46679999999999776533 2222 444 49999999998 6666665432 22 12222221 11 1
Q ss_pred ----CCCCCCccEEEEcccccCCcChHHHHHHHHHHHHhcCCCCceEeecccccCCCCCCCCC-CCeEEEeeeeccCccc
Q 026036 142 ----PIPNPDWDLILASDILLYVKQYSNLIKSLSVLLKSYKPKDSQVGHLTKNEQGEGTEGLP-WPAFLMSWRRRIGKED 216 (244)
Q Consensus 142 ----~~~~~~fD~I~~~~~l~~~~~~~~l~~~l~~~~~~lk~gG~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~ 216 (244)
++.+++||+|+++.++++.. ++.+++++++++|||||++++............... ...+......++ .+
T Consensus 126 ~~~~~~~~~~fD~V~~~~~l~~~~---d~~~~l~~~~r~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~ 200 (292)
T 2aot_A 126 RMLEKKELQKWDFIHMIQMLYYVK---DIPATLKFFHSLLGTNAKMLIIVVSGSSGWDKLWKKYGSRFPQDDLCQY--IT 200 (292)
T ss_dssp HHHTTTCCCCEEEEEEESCGGGCS---CHHHHHHHHHHTEEEEEEEEEEEECTTSHHHHHHHHHGGGSCCCTTCCC--CC
T ss_pred hhccccCCCceeEEEEeeeeeecC---CHHHHHHHHHHHcCCCcEEEEEEecCCccHHHHHHHHHHhccCCCcccC--CC
Confidence 13467899999999995543 445999999999999999998743321110000000 000000000112 22
Q ss_pred hhhHHHHHhhcCCeEEE
Q 026036 217 ETIFFTSCENAGLEVKH 233 (244)
Q Consensus 217 ~~~~~~~l~~~Gf~v~~ 233 (244)
..++.++++++||+++.
T Consensus 201 ~~~~~~~l~~aGf~~~~ 217 (292)
T 2aot_A 201 SDDLTQMLDNLGLKYEC 217 (292)
T ss_dssp HHHHHHHHHHHTCCEEE
T ss_pred HHHHHHHHHHCCCceEE
Confidence 57889999999998876
|
| >4dzr_A Protein-(glutamine-N5) methyltransferase, release specific; structural genomics, PSI-biology; 2.55A {Alicyclobacillus acidocaldarius subsp} | Back alignment and structure |
|---|
Probab=99.60 E-value=3.9e-16 Score=122.62 Aligned_cols=149 Identities=11% Similarity=0.055 Sum_probs=87.4
Q ss_pred eechHHHHHHHHhhccCc-ccCCeEEEeCCCCcHHHHHHHHhC-CCeEEEEeCChHHHHHHHHHhHHhcCCCCCcceEee
Q 026036 58 LWPGTFSFAEWLMHHREW-IERRRCIELGSGTGALAIFLRKAM-NLDITTSDYNDQEIEDNIAYNSTTNGITPALPHIKH 135 (244)
Q Consensus 58 ~w~~~~~l~~~~~~~~~~-~~~~~VLdlG~G~G~~~~~~a~~~-~~~v~~~D~~~~~l~~~~~~~~~~~~~~~~~~~~~~ 135 (244)
..|.+..+.+++...... .++.+|||+|||+|.++..+++.. +.+|+++|+++.++ +.++++...++. ++..+..
T Consensus 10 p~~~~~~~~~~~~~~l~~~~~~~~vLDiG~G~G~~~~~l~~~~~~~~v~~vD~~~~~~-~~a~~~~~~~~~--~~~~~~~ 86 (215)
T 4dzr_A 10 PRPDTEVLVEEAIRFLKRMPSGTRVIDVGTGSGCIAVSIALACPGVSVTAVDLSMDAL-AVARRNAERFGA--VVDWAAA 86 (215)
T ss_dssp CCHHHHHHHHHHHHHHTTCCTTEEEEEEESSBCHHHHHHHHHCTTEEEEEEECC----------------------CCHH
T ss_pred CCccHHHHHHHHHHHhhhcCCCCEEEEecCCHhHHHHHHHHhCCCCeEEEEECCHHHH-HHHHHHHHHhCC--ceEEEEc
Confidence 345677788887766543 578899999999999999999886 56899999999987 778877766554 2333333
Q ss_pred ecCCCCCC---CCCCccEEEEcccccCCcCh-----------------------HHHHHHHHHHHHhcCCCCc-eEeecc
Q 026036 136 SWGDAFPI---PNPDWDLILASDILLYVKQY-----------------------SNLIKSLSVLLKSYKPKDS-QVGHLT 188 (244)
Q Consensus 136 ~~~~~~~~---~~~~fD~I~~~~~l~~~~~~-----------------------~~l~~~l~~~~~~lk~gG~-~~~~~~ 188 (244)
+..+..+. ..++||+|+++.+++..... ....+.++++.++|||||+ +++...
T Consensus 87 d~~~~~~~~~~~~~~fD~i~~npp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~ 166 (215)
T 4dzr_A 87 DGIEWLIERAERGRPWHAIVSNPPYIPTGEIDQLEPSVRDYEPRLALDGGEDGLQFYRRMAALPPYVLARGRAGVFLEVG 166 (215)
T ss_dssp HHHHHHHHHHHTTCCBSEEEECCCCCC------------------------CTTHHHHHHHTCCGGGBCSSSEEEEEECT
T ss_pred chHhhhhhhhhccCcccEEEECCCCCCCccccccChhhhccCccccccCCCcHHHHHHHHHHHHHHHhcCCCeEEEEEEC
Confidence 33221110 12689999998776332211 0115778889999999998 444311
Q ss_pred cccCCCCCCCCCCCeEEEeeeeccCccchhhHHHHHh--hcCCeEEEe
Q 026036 189 KNEQGEGTEGLPWPAFLMSWRRRIGKEDETIFFTSCE--NAGLEVKHL 234 (244)
Q Consensus 189 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~--~~Gf~v~~~ 234 (244)
. .....+.+.++ +.||....+
T Consensus 167 ----------------------~---~~~~~~~~~l~~~~~gf~~~~~ 189 (215)
T 4dzr_A 167 ----------------------H---NQADEVARLFAPWRERGFRVRK 189 (215)
T ss_dssp ----------------------T---SCHHHHHHHTGGGGGGTEECCE
T ss_pred ----------------------C---ccHHHHHHHHHHhhcCCceEEE
Confidence 0 12367778888 888865433
|
| >3lst_A CALO1 methyltransferase; calicheamicin, enediyne, SAH, STRU genomics, PSI-2, protein structure initiative; HET: SAH; 2.40A {Micromonospora echinospora} | Back alignment and structure |
|---|
Probab=99.59 E-value=2.2e-15 Score=127.60 Aligned_cols=153 Identities=10% Similarity=0.086 Sum_probs=97.1
Q ss_pred cCcccCCeEEEeCCCCcHHHHHHHHhC-CCeEEEEeCChHHHHHHHHHhHHhcCCCCCcceEeeecCCCCCCCCCCccEE
Q 026036 73 REWIERRRCIELGSGTGALAIFLRKAM-NLDITTSDYNDQEIEDNIAYNSTTNGITPALPHIKHSWGDAFPIPNPDWDLI 151 (244)
Q Consensus 73 ~~~~~~~~VLdlG~G~G~~~~~~a~~~-~~~v~~~D~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fD~I 151 (244)
....++.+|||||||+|..+..+++.. ..+++++|++ .++ . +.+....+...++..+..+..+. .+ +||+|
T Consensus 180 ~~~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~~-~~~-~--~~~~~~~~~~~~v~~~~~d~~~~--~p--~~D~v 251 (348)
T 3lst_A 180 GDFPATGTVADVGGGRGGFLLTVLREHPGLQGVLLDRA-EVV-A--RHRLDAPDVAGRWKVVEGDFLRE--VP--HADVH 251 (348)
T ss_dssp SCCCSSEEEEEETCTTSHHHHHHHHHCTTEEEEEEECH-HHH-T--TCCCCCGGGTTSEEEEECCTTTC--CC--CCSEE
T ss_pred CCccCCceEEEECCccCHHHHHHHHHCCCCEEEEecCH-HHh-h--cccccccCCCCCeEEEecCCCCC--CC--CCcEE
Confidence 344567899999999999999998876 5689999994 343 3 22222223333444444444322 22 89999
Q ss_pred EEcccccCCcChHHHHHHHHHHHHhcCCCCceEeecccccCCCCCCCCC--CCeEEEeeeeccCccchhhHHHHHhhcCC
Q 026036 152 LASDILLYVKQYSNLIKSLSVLLKSYKPKDSQVGHLTKNEQGEGTEGLP--WPAFLMSWRRRIGKEDETIFFTSCENAGL 229 (244)
Q Consensus 152 ~~~~~l~~~~~~~~l~~~l~~~~~~lk~gG~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~l~~~Gf 229 (244)
++..++ ++...+...+.++++++.|||||++++............... +..++.....+ ..+.+++.++++++||
T Consensus 252 ~~~~vl-h~~~d~~~~~~L~~~~~~LkpgG~l~i~e~~~~~~~~~~~~~~~d~~~~~~~~~~--~~t~~e~~~ll~~aGf 328 (348)
T 3lst_A 252 VLKRIL-HNWGDEDSVRILTNCRRVMPAHGRVLVIDAVVPEGNDAHQSKEMDFMMLAARTGQ--ERTAAELEPLFTAAGL 328 (348)
T ss_dssp EEESCG-GGSCHHHHHHHHHHHHHTCCTTCEEEEEECCBCSSSSCCHHHHHHHHHHHTTSCC--CCBHHHHHHHHHHTTE
T ss_pred EEehhc-cCCCHHHHHHHHHHHHHhcCCCCEEEEEEeccCCCCCcchhhhcChhhhhcCCCc--CCCHHHHHHHHHHCCC
Confidence 999999 444445567999999999999999998754333321110000 00000000111 1235899999999999
Q ss_pred eEEEecc
Q 026036 230 EVKHLGS 236 (244)
Q Consensus 230 ~v~~~~~ 236 (244)
+++++..
T Consensus 329 ~~~~~~~ 335 (348)
T 3lst_A 329 RLDRVVG 335 (348)
T ss_dssp EEEEEEE
T ss_pred ceEEEEE
Confidence 9988753
|
| >3fzg_A 16S rRNA methylase; methyltransferase, plasmid, transferase; HET: SAM; 2.00A {Escherichia coli} | Back alignment and structure |
|---|
Probab=99.59 E-value=2.3e-15 Score=115.04 Aligned_cols=117 Identities=11% Similarity=0.134 Sum_probs=84.8
Q ss_pred chHHHHHHHHhhccCcccCCeEEEeCCCCcHHHHHHHHhC-CCeEEEEeCChHHHHHHHHHhHHhcCCCCCcceEeeecC
Q 026036 60 PGTFSFAEWLMHHREWIERRRCIELGSGTGALAIFLRKAM-NLDITTSDYNDQEIEDNIAYNSTTNGITPALPHIKHSWG 138 (244)
Q Consensus 60 ~~~~~l~~~~~~~~~~~~~~~VLdlG~G~G~~~~~~a~~~-~~~v~~~D~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 138 (244)
|.-..+...+..+. .+..+|||||||+|.+++.++... ..+|+++|+|+.|+ +.+++|+..++...++... +.
T Consensus 34 p~ld~fY~~~~~~l--~~~~~VLDlGCG~GplAl~l~~~~p~a~~~A~Di~~~~l-eiar~~~~~~g~~~~v~~~--d~- 107 (200)
T 3fzg_A 34 ATLNDFYTYVFGNI--KHVSSILDFGCGFNPLALYQWNENEKIIYHAYDIDRAEI-AFLSSIIGKLKTTIKYRFL--NK- 107 (200)
T ss_dssp GGHHHHHHHHHHHS--CCCSEEEEETCTTHHHHHHHHCSSCCCEEEEECSCHHHH-HHHHHHHHHSCCSSEEEEE--CC-
T ss_pred HhHHHHHHHHHhhc--CCCCeEEEecCCCCHHHHHHHhcCCCCEEEEEeCCHHHH-HHHHHHHHhcCCCccEEEe--cc-
Confidence 44444444444443 346799999999999999997654 56999999999998 9999999988874333221 11
Q ss_pred CCCCCCCCCccEEEEcccccCCcChHHHHHHHHHHHHhcCCCCceEee
Q 026036 139 DAFPIPNPDWDLILASDILLYVKQYSNLIKSLSVLLKSYKPKDSQVGH 186 (244)
Q Consensus 139 ~~~~~~~~~fD~I~~~~~l~~~~~~~~l~~~l~~~~~~lk~gG~~~~~ 186 (244)
....+.++||+|++..++ +.. ++....+.++++.|+|||.++-.
T Consensus 108 -~~~~~~~~~DvVLa~k~L-HlL--~~~~~al~~v~~~L~pggvfISf 151 (200)
T 3fzg_A 108 -ESDVYKGTYDVVFLLKML-PVL--KQQDVNILDFLQLFHTQNFVISF 151 (200)
T ss_dssp -HHHHTTSEEEEEEEETCH-HHH--HHTTCCHHHHHHTCEEEEEEEEE
T ss_pred -cccCCCCCcChhhHhhHH-Hhh--hhhHHHHHHHHHHhCCCCEEEEe
Confidence 112345679999999999 443 55557888999999999865543
|
| >1nv8_A HEMK protein; class I adoMet-dependent methyltransferase; HET: SAM MEQ; 2.20A {Thermotoga maritima} SCOP: c.66.1.30 PDB: 1nv9_A* 1vq1_A* 1sg9_A* | Back alignment and structure |
|---|
Probab=99.59 E-value=1e-14 Score=120.12 Aligned_cols=126 Identities=13% Similarity=0.185 Sum_probs=95.1
Q ss_pred ceeechHHHHHHHHhhccCcccCCeEEEeCCCCcHHHHHHHHhCCCeEEEEeCChHHHHHHHHHhHHhcCCCCCcceEee
Q 026036 56 NFLWPGTFSFAEWLMHHREWIERRRCIELGSGTGALAIFLRKAMNLDITTSDYNDQEIEDNIAYNSTTNGITPALPHIKH 135 (244)
Q Consensus 56 ~~~w~~~~~l~~~~~~~~~~~~~~~VLdlG~G~G~~~~~~a~~~~~~v~~~D~~~~~l~~~~~~~~~~~~~~~~~~~~~~ 135 (244)
....|.+..+.+++.......++.+|||+|||+|.+++.++...+.+|+++|+|+.++ +.+++|+..+++..++..+..
T Consensus 102 lipr~~te~lv~~~l~~~~~~~~~~vLDlG~GsG~~~~~la~~~~~~v~~vDis~~al-~~A~~n~~~~~l~~~v~~~~~ 180 (284)
T 1nv8_A 102 FVPRPETEELVELALELIRKYGIKTVADIGTGSGAIGVSVAKFSDAIVFATDVSSKAV-EIARKNAERHGVSDRFFVRKG 180 (284)
T ss_dssp CCCCTTHHHHHHHHHHHHHHHTCCEEEEESCTTSHHHHHHHHHSSCEEEEEESCHHHH-HHHHHHHHHTTCTTSEEEEES
T ss_pred eecChhHHHHHHHHHHHhcccCCCEEEEEeCchhHHHHHHHHCCCCEEEEEECCHHHH-HHHHHHHHHcCCCCceEEEEC
Confidence 3456778888888876654446679999999999999999877567899999999997 899999998888655666665
Q ss_pred ecCCCCCCCCCCc---cEEEEcccccCC-----------cChHHH------HHHHHHHH-HhcCCCCceEee
Q 026036 136 SWGDAFPIPNPDW---DLILASDILLYV-----------KQYSNL------IKSLSVLL-KSYKPKDSQVGH 186 (244)
Q Consensus 136 ~~~~~~~~~~~~f---D~I~~~~~l~~~-----------~~~~~l------~~~l~~~~-~~lk~gG~~~~~ 186 (244)
++.+.. .++| |+|+++.+. .. +....+ ...++++. +.++|||.+++.
T Consensus 181 D~~~~~---~~~f~~~D~IvsnPPy-i~~~~~l~~~v~~ep~~al~~~~dgl~~~~~i~~~~l~pgG~l~~e 248 (284)
T 1nv8_A 181 EFLEPF---KEKFASIEMILSNPPY-VKSSAHLPKDVLFEPPEALFGGEDGLDFYREFFGRYDTSGKIVLME 248 (284)
T ss_dssp STTGGG---GGGTTTCCEEEECCCC-BCGGGSCTTSCCCSCHHHHBCTTTSCHHHHHHHHHCCCTTCEEEEE
T ss_pred cchhhc---ccccCCCCEEEEcCCC-CCcccccChhhccCcHHHhcCCCcHHHHHHHHHHhcCCCCCEEEEE
Confidence 555432 2468 999998553 21 111111 26789999 999999988875
|
| >2pjd_A Ribosomal RNA small subunit methyltransferase C; gene duplication, RNA modification, SAM binding; 2.10A {Escherichia coli} | Back alignment and structure |
|---|
Probab=99.59 E-value=2.1e-15 Score=127.53 Aligned_cols=115 Identities=10% Similarity=0.177 Sum_probs=86.7
Q ss_pred HHHHhhccCcccCCeEEEeCCCCcHHHHHHHHhC-CCeEEEEeCChHHHHHHHHHhHHhcCCCCCcceEeeecCCCCCCC
Q 026036 66 AEWLMHHREWIERRRCIELGSGTGALAIFLRKAM-NLDITTSDYNDQEIEDNIAYNSTTNGITPALPHIKHSWGDAFPIP 144 (244)
Q Consensus 66 ~~~~~~~~~~~~~~~VLdlG~G~G~~~~~~a~~~-~~~v~~~D~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 144 (244)
++++.......++.+|||+|||+|.++..+++.+ ..+|+++|+|+.++ +.++++...+++.. .+.+++.....
T Consensus 185 ~~~ll~~l~~~~~~~VLDlGcG~G~~~~~la~~~~~~~v~~vD~s~~~l-~~a~~~~~~~~~~~-----~~~~~d~~~~~ 258 (343)
T 2pjd_A 185 SQLLLSTLTPHTKGKVLDVGCGAGVLSVAFARHSPKIRLTLCDVSAPAV-EASRATLAANGVEG-----EVFASNVFSEV 258 (343)
T ss_dssp HHHHHHHSCTTCCSBCCBTTCTTSHHHHHHHHHCTTCBCEEEESBHHHH-HHHHHHHHHTTCCC-----EEEECSTTTTC
T ss_pred HHHHHHhcCcCCCCeEEEecCccCHHHHHHHHHCCCCEEEEEECCHHHH-HHHHHHHHHhCCCC-----EEEEccccccc
Confidence 3344443333356799999999999999999886 35999999999987 88888888777631 22344444445
Q ss_pred CCCccEEEEcccccCC---cChHHHHHHHHHHHHhcCCCCceEeec
Q 026036 145 NPDWDLILASDILLYV---KQYSNLIKSLSVLLKSYKPKDSQVGHL 187 (244)
Q Consensus 145 ~~~fD~I~~~~~l~~~---~~~~~l~~~l~~~~~~lk~gG~~~~~~ 187 (244)
+++||+|+++.++ ++ .......+.++++.+.|||||+++++.
T Consensus 259 ~~~fD~Iv~~~~~-~~g~~~~~~~~~~~l~~~~~~LkpgG~l~i~~ 303 (343)
T 2pjd_A 259 KGRFDMIISNPPF-HDGMQTSLDAAQTLIRGAVRHLNSGGELRIVA 303 (343)
T ss_dssp CSCEEEEEECCCC-CSSSHHHHHHHHHHHHHHGGGEEEEEEEEEEE
T ss_pred cCCeeEEEECCCc-ccCccCCHHHHHHHHHHHHHhCCCCcEEEEEE
Confidence 6789999999987 43 134556789999999999999988863
|
| >2igt_A SAM dependent methyltransferase; alpha-beta sandwich, beta-barrel, structural genomics, PSI-2 structure initiative; HET: MSE SAM GOL; 1.89A {Agrobacterium tumefaciens str} SCOP: c.66.1.51 | Back alignment and structure |
|---|
Probab=99.59 E-value=2.3e-14 Score=120.44 Aligned_cols=109 Identities=16% Similarity=0.126 Sum_probs=79.7
Q ss_pred ccCCeEEEeCCCCcHHHHHHHHhCCCeEEEEeCChHHHHHHHHHhHHhcCCCC-CcceEeeecCCCCCC---CCCCccEE
Q 026036 76 IERRRCIELGSGTGALAIFLRKAMNLDITTSDYNDQEIEDNIAYNSTTNGITP-ALPHIKHSWGDAFPI---PNPDWDLI 151 (244)
Q Consensus 76 ~~~~~VLdlG~G~G~~~~~~a~~~~~~v~~~D~~~~~l~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~---~~~~fD~I 151 (244)
.++.+|||+|||+|.+++.++.. +.+|+++|+|+.++ +.+++|+..+++.. ++..+..+..+.+.. ..++||+|
T Consensus 152 ~~~~~VLDlgcGtG~~sl~la~~-ga~V~~VD~s~~al-~~a~~n~~~~gl~~~~v~~i~~D~~~~l~~~~~~~~~fD~I 229 (332)
T 2igt_A 152 DRPLKVLNLFGYTGVASLVAAAA-GAEVTHVDASKKAI-GWAKENQVLAGLEQAPIRWICEDAMKFIQREERRGSTYDII 229 (332)
T ss_dssp SSCCEEEEETCTTCHHHHHHHHT-TCEEEEECSCHHHH-HHHHHHHHHHTCTTSCEEEECSCHHHHHHHHHHHTCCBSEE
T ss_pred CCCCcEEEcccccCHHHHHHHHc-CCEEEEEECCHHHH-HHHHHHHHHcCCCccceEEEECcHHHHHHHHHhcCCCceEE
Confidence 35679999999999999999886 45999999999997 89999999888743 244443332221111 13589999
Q ss_pred EEcccccCCc-------ChHHHHHHHHHHHHhcCCCCceEee
Q 026036 152 LASDILLYVK-------QYSNLIKSLSVLLKSYKPKDSQVGH 186 (244)
Q Consensus 152 ~~~~~l~~~~-------~~~~l~~~l~~~~~~lk~gG~~~~~ 186 (244)
+++.+.|... ......+.++.+.++|+|||.+++.
T Consensus 230 i~dPP~~~~~~~~~~~~~~~~~~~ll~~~~~~LkpgG~lli~ 271 (332)
T 2igt_A 230 LTDPPKFGRGTHGEVWQLFDHLPLMLDICREILSPKALGLVL 271 (332)
T ss_dssp EECCCSEEECTTCCEEEHHHHHHHHHHHHHHTBCTTCCEEEE
T ss_pred EECCccccCCchHHHHHHHHHHHHHHHHHHHhcCcCcEEEEE
Confidence 9977643211 2345668899999999999987665
|
| >3fpf_A Mtnas, putative uncharacterized protein; thermonicotianamine, nicotianamine, biosynthetic protein; HET: TNA MTA; 1.66A {Methanothermobacter thermautotrophicusorganism_taxid} PDB: 3fpe_A* 3fph_A* 3fpg_A* 3fpj_A* 3o31_A* | Back alignment and structure |
|---|
Probab=99.59 E-value=1.2e-14 Score=119.11 Aligned_cols=105 Identities=11% Similarity=0.178 Sum_probs=79.9
Q ss_pred ccCcccCCeEEEeCCCCcHHH-HHHHHhCCCeEEEEeCChHHHHHHHHHhHHhcCCCCCcceEeeecCCCCCCCCCCccE
Q 026036 72 HREWIERRRCIELGSGTGALA-IFLRKAMNLDITTSDYNDQEIEDNIAYNSTTNGITPALPHIKHSWGDAFPIPNPDWDL 150 (244)
Q Consensus 72 ~~~~~~~~~VLdlG~G~G~~~-~~~a~~~~~~v~~~D~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fD~ 150 (244)
.....++.+|||||||+|.++ +.+++..+++|+++|++++++ +.++++....++ .++..+ .++....++++||+
T Consensus 117 la~l~~g~rVLDIGcG~G~~ta~~lA~~~ga~V~gIDis~~~l-~~Ar~~~~~~gl-~~v~~v---~gDa~~l~d~~FDv 191 (298)
T 3fpf_A 117 LGRFRRGERAVFIGGGPLPLTGILLSHVYGMRVNVVEIEPDIA-ELSRKVIEGLGV-DGVNVI---TGDETVIDGLEFDV 191 (298)
T ss_dssp HTTCCTTCEEEEECCCSSCHHHHHHHHTTCCEEEEEESSHHHH-HHHHHHHHHHTC-CSEEEE---ESCGGGGGGCCCSE
T ss_pred HcCCCCcCEEEEECCCccHHHHHHHHHccCCEEEEEECCHHHH-HHHHHHHHhcCC-CCeEEE---ECchhhCCCCCcCE
Confidence 345678999999999998654 556665689999999999998 888888877666 444444 33433344678999
Q ss_pred EEEcccccCCcChHHHHHHHHHHHHhcCCCCceEeec
Q 026036 151 ILASDILLYVKQYSNLIKSLSVLLKSYKPKDSQVGHL 187 (244)
Q Consensus 151 I~~~~~l~~~~~~~~l~~~l~~~~~~lk~gG~~~~~~ 187 (244)
|++.... ++..++++++.+.|||||++++..
T Consensus 192 V~~~a~~------~d~~~~l~el~r~LkPGG~Lvv~~ 222 (298)
T 3fpf_A 192 LMVAALA------EPKRRVFRNIHRYVDTETRIIYRT 222 (298)
T ss_dssp EEECTTC------SCHHHHHHHHHHHCCTTCEEEEEE
T ss_pred EEECCCc------cCHHHHHHHHHHHcCCCcEEEEEc
Confidence 9986542 345589999999999999998873
|
| >3opn_A Putative hemolysin; structural genomics, PSI-2, protein structure initiative, NE SGX research center for structural genomics, nysgxrc; 2.05A {Lactococcus lactis subsp} | Back alignment and structure |
|---|
Probab=99.58 E-value=1.1e-15 Score=122.29 Aligned_cols=165 Identities=11% Similarity=0.065 Sum_probs=95.3
Q ss_pred eeechHHHHHHHHhhccCcccCCeEEEeCCCCcHHHHHHHHhCCCeEEEEeCChHHHHHHHHHhHHhcCCCCCcceEeee
Q 026036 57 FLWPGTFSFAEWLMHHREWIERRRCIELGSGTGALAIFLRKAMNLDITTSDYNDQEIEDNIAYNSTTNGITPALPHIKHS 136 (244)
Q Consensus 57 ~~w~~~~~l~~~~~~~~~~~~~~~VLdlG~G~G~~~~~~a~~~~~~v~~~D~~~~~l~~~~~~~~~~~~~~~~~~~~~~~ 136 (244)
++..++..+.+.+.......++.+|||||||+|.++..+++.+..+|+|+|+|+.|+ +.++++.......... .+.
T Consensus 17 yvsrg~~kL~~~L~~~~~~~~g~~VLDiGcGtG~~t~~la~~g~~~V~gvDis~~ml-~~a~~~~~~~~~~~~~---~~~ 92 (232)
T 3opn_A 17 YVSRGGLKLEKALKEFHLEINGKTCLDIGSSTGGFTDVMLQNGAKLVYALDVGTNQL-AWKIRSDERVVVMEQF---NFR 92 (232)
T ss_dssp SSSTTHHHHHHHHHHTTCCCTTCEEEEETCTTSHHHHHHHHTTCSEEEEECSSCCCC-CHHHHTCTTEEEECSC---CGG
T ss_pred ccCCcHHHHHHHHHHcCCCCCCCEEEEEccCCCHHHHHHHhcCCCEEEEEcCCHHHH-HHHHHhCccccccccc---eEE
Confidence 344477788777766655557889999999999999999888556999999999987 5544432211000000 011
Q ss_pred cCCCCCCCCCCccEEEEcccccCCcChHHHHHHHHHHHHhcCCCCceEeeccc-ccCCCCCCCCCCCeEEEeeeeccCcc
Q 026036 137 WGDAFPIPNPDWDLILASDILLYVKQYSNLIKSLSVLLKSYKPKDSQVGHLTK-NEQGEGTEGLPWPAFLMSWRRRIGKE 215 (244)
Q Consensus 137 ~~~~~~~~~~~fD~I~~~~~l~~~~~~~~l~~~l~~~~~~lk~gG~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~ 215 (244)
...........||.+.+ |+++.. . ...++++.++|||||++++.+.. ........ .....+.-....+ .
T Consensus 93 ~~~~~~~~~~~~d~~~~-D~v~~~--l---~~~l~~i~rvLkpgG~lv~~~~p~~e~~~~~~-~~~G~~~d~~~~~---~ 162 (232)
T 3opn_A 93 NAVLADFEQGRPSFTSI-DVSFIS--L---DLILPPLYEILEKNGEVAALIKPQFEAGREQV-GKNGIIRDPKVHQ---M 162 (232)
T ss_dssp GCCGGGCCSCCCSEEEE-CCSSSC--G---GGTHHHHHHHSCTTCEEEEEECHHHHSCHHHH-C-CCCCCCHHHHH---H
T ss_pred EeCHhHcCcCCCCEEEE-EEEhhh--H---HHHHHHHHHhccCCCEEEEEECcccccCHHHh-CcCCeecCcchhH---H
Confidence 10100111113565544 333232 2 48899999999999999886311 11100000 0000000001111 1
Q ss_pred chhhHHHHHhhcCCeEEEec
Q 026036 216 DETIFFTSCENAGLEVKHLG 235 (244)
Q Consensus 216 ~~~~~~~~l~~~Gf~v~~~~ 235 (244)
+.+++.++++++||+++.+.
T Consensus 163 ~~~~l~~~l~~aGf~v~~~~ 182 (232)
T 3opn_A 163 TIEKVLKTATQLGFSVKGLT 182 (232)
T ss_dssp HHHHHHHHHHHHTEEEEEEE
T ss_pred HHHHHHHHHHHCCCEEEEEE
Confidence 35788899999999998774
|
| >3g5t_A Trans-aconitate 3-methyltransferase; structural genomics, protein structure initiative, PSI, center for eukaryotic structural genomics; HET: MSE SAH T8N; 1.12A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.58 E-value=9.1e-15 Score=121.13 Aligned_cols=115 Identities=15% Similarity=0.156 Sum_probs=85.1
Q ss_pred HHHHHhhccCcccCCeEEEeCCCCcHHHHHHHHh--CCCeEEEEeCChHHHHHHHHHhHHhc-CCCCCcceEeeecCCCC
Q 026036 65 FAEWLMHHREWIERRRCIELGSGTGALAIFLRKA--MNLDITTSDYNDQEIEDNIAYNSTTN-GITPALPHIKHSWGDAF 141 (244)
Q Consensus 65 l~~~~~~~~~~~~~~~VLdlG~G~G~~~~~~a~~--~~~~v~~~D~~~~~l~~~~~~~~~~~-~~~~~~~~~~~~~~~~~ 141 (244)
+.+.+..... .++.+|||||||+|..+..+++. .+.+|+|+|+|+.++ +.++++.... +...++..+..+..+ +
T Consensus 25 ~~~~l~~~~~-~~~~~vLDiGcG~G~~~~~la~~~~~~~~v~gvD~s~~~~-~~a~~~~~~~~~~~~~v~~~~~d~~~-~ 101 (299)
T 3g5t_A 25 FYKMIDEYHD-GERKLLVDVGCGPGTATLQMAQELKPFEQIIGSDLSATMI-KTAEVIKEGSPDTYKNVSFKISSSDD-F 101 (299)
T ss_dssp HHHHHHHHCC-SCCSEEEEETCTTTHHHHHHHHHSSCCSEEEEEESCHHHH-HHHHHHHHHCC-CCTTEEEEECCTTC-C
T ss_pred HHHHHHHHhc-CCCCEEEEECCCCCHHHHHHHHhCCCCCEEEEEeCCHHHH-HHHHHHHHhccCCCCceEEEEcCHHh-C
Confidence 4444444322 36789999999999999999874 378999999999987 7777776665 233344555444433 2
Q ss_pred CCCC------CCccEEEEcccccCCcChHHHHHHHHHHHHhcCCCCceEee
Q 026036 142 PIPN------PDWDLILASDILLYVKQYSNLIKSLSVLLKSYKPKDSQVGH 186 (244)
Q Consensus 142 ~~~~------~~fD~I~~~~~l~~~~~~~~l~~~l~~~~~~lk~gG~~~~~ 186 (244)
++.. ++||+|+++.++++. +..+.++++.++|||||.+++.
T Consensus 102 ~~~~~~~~~~~~fD~V~~~~~l~~~----~~~~~l~~~~~~LkpgG~l~i~ 148 (299)
T 3g5t_A 102 KFLGADSVDKQKIDMITAVECAHWF----DFEKFQRSAYANLRKDGTIAIW 148 (299)
T ss_dssp GGGCTTTTTSSCEEEEEEESCGGGS----CHHHHHHHHHHHEEEEEEEEEE
T ss_pred CccccccccCCCeeEEeHhhHHHHh----CHHHHHHHHHHhcCCCcEEEEE
Confidence 3334 689999999998443 4559999999999999999885
|
| >1g6q_1 HnRNP arginine N-methyltransferase; SAM-binding domain, beta-barrel, mixed alpha-beta, hexamer; 2.90A {Saccharomyces cerevisiae} SCOP: c.66.1.6 | Back alignment and structure |
|---|
Probab=99.58 E-value=8.5e-15 Score=122.98 Aligned_cols=118 Identities=15% Similarity=0.224 Sum_probs=88.0
Q ss_pred HHHHHhhccCcccCCeEEEeCCCCcHHHHHHHHhCCCeEEEEeCChHHHHHHHHHhHHhcCCCCCcceEeeecCCCCCCC
Q 026036 65 FAEWLMHHREWIERRRCIELGSGTGALAIFLRKAMNLDITTSDYNDQEIEDNIAYNSTTNGITPALPHIKHSWGDAFPIP 144 (244)
Q Consensus 65 l~~~~~~~~~~~~~~~VLdlG~G~G~~~~~~a~~~~~~v~~~D~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 144 (244)
..+.+.+.....++.+|||+|||+|.++..+++.+..+|+++|++ .++ +.+++++..+++..++..+..+..+ .+.+
T Consensus 26 y~~ai~~~~~~~~~~~VLDiGcGtG~ls~~la~~g~~~v~~vD~s-~~~-~~a~~~~~~~~~~~~i~~~~~d~~~-~~~~ 102 (328)
T 1g6q_1 26 YRNAIIQNKDLFKDKIVLDVGCGTGILSMFAAKHGAKHVIGVDMS-SII-EMAKELVELNGFSDKITLLRGKLED-VHLP 102 (328)
T ss_dssp HHHHHHHHHHHHTTCEEEEETCTTSHHHHHHHHTCCSEEEEEESS-THH-HHHHHHHHHTTCTTTEEEEESCTTT-SCCS
T ss_pred HHHHHHhhHhhcCCCEEEEecCccHHHHHHHHHCCCCEEEEEChH-HHH-HHHHHHHHHcCCCCCEEEEECchhh-ccCC
Confidence 344454444556788999999999999999988766699999999 576 7888888888886666655544433 3444
Q ss_pred CCCccEEEEcccccCCcChHHHHHHHHHHHHhcCCCCceEe
Q 026036 145 NPDWDLILASDILLYVKQYSNLIKSLSVLLKSYKPKDSQVG 185 (244)
Q Consensus 145 ~~~fD~I~~~~~l~~~~~~~~l~~~l~~~~~~lk~gG~~~~ 185 (244)
.++||+|++..+.|.......+...+.++.+.|||||+++.
T Consensus 103 ~~~~D~Ivs~~~~~~l~~~~~~~~~l~~~~~~LkpgG~li~ 143 (328)
T 1g6q_1 103 FPKVDIIISEWMGYFLLYESMMDTVLYARDHYLVEGGLIFP 143 (328)
T ss_dssp SSCEEEEEECCCBTTBSTTCCHHHHHHHHHHHEEEEEEEES
T ss_pred CCcccEEEEeCchhhcccHHHHHHHHHHHHhhcCCCeEEEE
Confidence 57899999986654433334455888999999999998864
|
| >4hc4_A Protein arginine N-methyltransferase 6; HRMT1L6, S-adenosyl-L-homocysteine, struc genomics, structural genomics consortium, SGC; HET: SAH; 1.97A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.58 E-value=7.1e-15 Score=124.90 Aligned_cols=115 Identities=15% Similarity=0.112 Sum_probs=85.0
Q ss_pred HHhhccCcccCCeEEEeCCCCcHHHHHHHHhCCCeEEEEeCChHHHHHHHHHhHHhcCCCCCcceEeeecCCCCCCCCCC
Q 026036 68 WLMHHREWIERRRCIELGSGTGALAIFLRKAMNLDITTSDYNDQEIEDNIAYNSTTNGITPALPHIKHSWGDAFPIPNPD 147 (244)
Q Consensus 68 ~~~~~~~~~~~~~VLdlG~G~G~~~~~~a~~~~~~v~~~D~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 147 (244)
.|.++....+|++|||||||+|++++.+|+.++.+|+++|.|+ ++ +.+++++..|++..++..+..+..+ +.. +++
T Consensus 74 Ai~~~~~~~~~k~VLDvG~GtGiLs~~Aa~aGA~~V~ave~s~-~~-~~a~~~~~~n~~~~~i~~i~~~~~~-~~l-pe~ 149 (376)
T 4hc4_A 74 GILRNWAALRGKTVLDVGAGTGILSIFCAQAGARRVYAVEASA-IW-QQAREVVRFNGLEDRVHVLPGPVET-VEL-PEQ 149 (376)
T ss_dssp HHHTTHHHHTTCEEEEETCTTSHHHHHHHHTTCSEEEEEECST-TH-HHHHHHHHHTTCTTTEEEEESCTTT-CCC-SSC
T ss_pred HHHhCHHhcCCCEEEEeCCCccHHHHHHHHhCCCEEEEEeChH-HH-HHHHHHHHHcCCCceEEEEeeeeee-ecC-Ccc
Confidence 3555556678999999999999999999998888999999996 55 7888999999998777776655433 222 368
Q ss_pred ccEEEEcccccCCcChHHHHHHHHHHHHhcCCCCceEee
Q 026036 148 WDLILASDILLYVKQYSNLIKSLSVLLKSYKPKDSQVGH 186 (244)
Q Consensus 148 fD~I~~~~~l~~~~~~~~l~~~l~~~~~~lk~gG~~~~~ 186 (244)
||+|++.-+-+.-.....+...+....+.|||||+++-.
T Consensus 150 ~DvivsE~~~~~l~~e~~l~~~l~a~~r~Lkp~G~~iP~ 188 (376)
T 4hc4_A 150 VDAIVSEWMGYGLLHESMLSSVLHARTKWLKEGGLLLPA 188 (376)
T ss_dssp EEEEECCCCBTTBTTTCSHHHHHHHHHHHEEEEEEEESC
T ss_pred ccEEEeecccccccccchhhhHHHHHHhhCCCCceECCc
Confidence 999998433221122223447777788999999976543
|
| >4df3_A Fibrillarin-like rRNA/TRNA 2'-O-methyltransferase; NADP rossmann superfamily, S-adenosyl-L-M (SAM) binding, nucleolus; HET: SAM; 1.73A {Aeropyrum pernix} | Back alignment and structure |
|---|
Probab=99.58 E-value=1.4e-14 Score=115.16 Aligned_cols=123 Identities=11% Similarity=0.021 Sum_probs=85.7
Q ss_pred cceeechHH-HHHHHHhh---ccCcccCCeEEEeCCCCcHHHHHHHHhC--CCeEEEEeCChHHHHHHHHHhHHhcCCCC
Q 026036 55 ANFLWPGTF-SFAEWLMH---HREWIERRRCIELGSGTGALAIFLRKAM--NLDITTSDYNDQEIEDNIAYNSTTNGITP 128 (244)
Q Consensus 55 ~~~~w~~~~-~l~~~~~~---~~~~~~~~~VLdlG~G~G~~~~~~a~~~--~~~v~~~D~~~~~l~~~~~~~~~~~~~~~ 128 (244)
+...|+... .|+..+.. ...+.+|.+|||+|||+|..+..+|+.. ..+|+++|++++|+ +.+++++... .
T Consensus 51 e~r~w~p~rsklaa~i~~gl~~l~ikpG~~VldlG~G~G~~~~~la~~VG~~G~V~avD~s~~~~-~~l~~~a~~~---~ 126 (233)
T 4df3_A 51 EYREWNAYRSKLAAALLKGLIELPVKEGDRILYLGIASGTTASHMSDIIGPRGRIYGVEFAPRVM-RDLLTVVRDR---R 126 (233)
T ss_dssp EEEECCTTTCHHHHHHHTTCSCCCCCTTCEEEEETCTTSHHHHHHHHHHCTTCEEEEEECCHHHH-HHHHHHSTTC---T
T ss_pred eeeeECCCchHHHHHHHhchhhcCCCCCCEEEEecCcCCHHHHHHHHHhCCCceEEEEeCCHHHH-HHHHHhhHhh---c
Confidence 344565533 45555443 3567899999999999999999999874 46899999999998 5565554432 1
Q ss_pred CcceEeeecCCC--CCCCCCCccEEEEcccccCCcChHHHHHHHHHHHHhcCCCCceEee
Q 026036 129 ALPHIKHSWGDA--FPIPNPDWDLILASDILLYVKQYSNLIKSLSVLLKSYKPKDSQVGH 186 (244)
Q Consensus 129 ~~~~~~~~~~~~--~~~~~~~fD~I~~~~~l~~~~~~~~l~~~l~~~~~~lk~gG~~~~~ 186 (244)
++..+..+..++ .+...+++|+|++ ++. ++ .+...++.++.+.|||||+++++
T Consensus 127 ni~~V~~d~~~p~~~~~~~~~vDvVf~-d~~-~~---~~~~~~l~~~~r~LKpGG~lvI~ 181 (233)
T 4df3_A 127 NIFPILGDARFPEKYRHLVEGVDGLYA-DVA-QP---EQAAIVVRNARFFLRDGGYMLMA 181 (233)
T ss_dssp TEEEEESCTTCGGGGTTTCCCEEEEEE-CCC-CT---THHHHHHHHHHHHEEEEEEEEEE
T ss_pred CeeEEEEeccCccccccccceEEEEEE-ecc-CC---hhHHHHHHHHHHhccCCCEEEEE
Confidence 234454444432 2344568999986 332 32 34458899999999999999886
|
| >1jsx_A Glucose-inhibited division protein B; methyltransferase fold, structural genomics, PSI, protein structure initiative; 2.40A {Escherichia coli} SCOP: c.66.1.20 | Back alignment and structure |
|---|
Probab=99.57 E-value=1.1e-14 Score=114.10 Aligned_cols=115 Identities=11% Similarity=0.105 Sum_probs=81.7
Q ss_pred hHHHHHHHHhhccCc---ccCCeEEEeCCCCcHHHHHHHHhC-CCeEEEEeCChHHHHHHHHHhHHhcCCCCCcceEeee
Q 026036 61 GTFSFAEWLMHHREW---IERRRCIELGSGTGALAIFLRKAM-NLDITTSDYNDQEIEDNIAYNSTTNGITPALPHIKHS 136 (244)
Q Consensus 61 ~~~~l~~~~~~~~~~---~~~~~VLdlG~G~G~~~~~~a~~~-~~~v~~~D~~~~~l~~~~~~~~~~~~~~~~~~~~~~~ 136 (244)
.+..+.+.+...... .++.+|||+|||+|.++..++... +.+|+++|+++.++ +.++++...++++. +..+..+
T Consensus 46 ~~~~~~~~~~~~l~~~~~~~~~~vLDiG~G~G~~~~~l~~~~~~~~v~~vD~s~~~~-~~a~~~~~~~~~~~-v~~~~~d 123 (207)
T 1jsx_A 46 PNEMLVRHILDSIVVAPYLQGERFIDVGTGPGLPGIPLSIVRPEAHFTLLDSLGKRV-RFLRQVQHELKLEN-IEPVQSR 123 (207)
T ss_dssp --CHHHHHHHHHHHHGGGCCSSEEEEETCTTTTTHHHHHHHCTTSEEEEEESCHHHH-HHHHHHHHHTTCSS-EEEEECC
T ss_pred HHHHHHHHHHhhhhhhhhcCCCeEEEECCCCCHHHHHHHHHCCCCEEEEEeCCHHHH-HHHHHHHHHcCCCC-eEEEecc
Confidence 444444444443222 247899999999999999998875 67999999999987 88888888776633 4444444
Q ss_pred cCCCCCCCCCCccEEEEcccccCCcChHHHHHHHHHHHHhcCCCCceEee
Q 026036 137 WGDAFPIPNPDWDLILASDILLYVKQYSNLIKSLSVLLKSYKPKDSQVGH 186 (244)
Q Consensus 137 ~~~~~~~~~~~fD~I~~~~~l~~~~~~~~l~~~l~~~~~~lk~gG~~~~~ 186 (244)
+.+.. ..++||+|+++.+ ......++.+.+.|+|||.+++.
T Consensus 124 ~~~~~--~~~~~D~i~~~~~-------~~~~~~l~~~~~~L~~gG~l~~~ 164 (207)
T 1jsx_A 124 VEEFP--SEPPFDGVISRAF-------ASLNDMVSWCHHLPGEQGRFYAL 164 (207)
T ss_dssp TTTSC--CCSCEEEEECSCS-------SSHHHHHHHHTTSEEEEEEEEEE
T ss_pred hhhCC--ccCCcCEEEEecc-------CCHHHHHHHHHHhcCCCcEEEEE
Confidence 43322 2468999998542 22348899999999999987775
|
| >1fbn_A MJ fibrillarin homologue; MJ proteins, ribosomal RNA processing, snoRNP, structural genomics, BSGC structure funded by NIH; 1.60A {Methanocaldococcus jannaschii} SCOP: c.66.1.3 PDB: 1g8s_A | Back alignment and structure |
|---|
Probab=99.56 E-value=6.1e-14 Score=111.83 Aligned_cols=107 Identities=10% Similarity=0.027 Sum_probs=75.9
Q ss_pred hhccCcccCCeEEEeCCCCcHHHHHHHHhC-CCeEEEEeCChHHHHHHHHHhHHhcCCCCCcceEeeecCCC---CCCCC
Q 026036 70 MHHREWIERRRCIELGSGTGALAIFLRKAM-NLDITTSDYNDQEIEDNIAYNSTTNGITPALPHIKHSWGDA---FPIPN 145 (244)
Q Consensus 70 ~~~~~~~~~~~VLdlG~G~G~~~~~~a~~~-~~~v~~~D~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~ 145 (244)
.......++.+|||+|||+|.++..+++.. ..+|+++|+++.++ +.+++++..+ .++..+..+..+. .+..
T Consensus 67 l~~~~~~~~~~VLDlGcG~G~~~~~la~~~~~~~v~gvD~s~~~~-~~a~~~~~~~---~~v~~~~~d~~~~~~~~~~~- 141 (230)
T 1fbn_A 67 LKVMPIKRDSKILYLGASAGTTPSHVADIADKGIVYAIEYAPRIM-RELLDACAER---ENIIPILGDANKPQEYANIV- 141 (230)
T ss_dssp CCCCCCCTTCEEEEESCCSSHHHHHHHHHTTTSEEEEEESCHHHH-HHHHHHTTTC---TTEEEEECCTTCGGGGTTTS-
T ss_pred ccccCCCCCCEEEEEcccCCHHHHHHHHHcCCcEEEEEECCHHHH-HHHHHHhhcC---CCeEEEECCCCCcccccccC-
Confidence 444445678899999999999999999885 47999999999987 6777765543 2333333333221 2333
Q ss_pred CCccEEEEcccccCCcChHHHHHHHHHHHHhcCCCCceEee
Q 026036 146 PDWDLILASDILLYVKQYSNLIKSLSVLLKSYKPKDSQVGH 186 (244)
Q Consensus 146 ~~fD~I~~~~~l~~~~~~~~l~~~l~~~~~~lk~gG~~~~~ 186 (244)
++||+|+. ++ .........++++.+.|||||++++.
T Consensus 142 ~~~D~v~~-~~----~~~~~~~~~l~~~~~~LkpgG~l~i~ 177 (230)
T 1fbn_A 142 EKVDVIYE-DV----AQPNQAEILIKNAKWFLKKGGYGMIA 177 (230)
T ss_dssp CCEEEEEE-CC----CSTTHHHHHHHHHHHHEEEEEEEEEE
T ss_pred ccEEEEEE-ec----CChhHHHHHHHHHHHhCCCCcEEEEE
Confidence 68999993 22 22333347799999999999998886
|
| >1o9g_A RRNA methyltransferase; antibiotic resistance, Se-MAD; 1.5A {Streptomyces viridochromogenes} SCOP: c.66.1.29 PDB: 1o9h_A | Back alignment and structure |
|---|
Probab=99.56 E-value=8.4e-15 Score=118.29 Aligned_cols=122 Identities=13% Similarity=-0.008 Sum_probs=82.5
Q ss_pred HHHHHHhhccCcccCCeEEEeCCCCcHHHHHHHHh--C-CCeEEEEeCChHHHHHHHHHhHHhc---CCCCC--------
Q 026036 64 SFAEWLMHHREWIERRRCIELGSGTGALAIFLRKA--M-NLDITTSDYNDQEIEDNIAYNSTTN---GITPA-------- 129 (244)
Q Consensus 64 ~l~~~~~~~~~~~~~~~VLdlG~G~G~~~~~~a~~--~-~~~v~~~D~~~~~l~~~~~~~~~~~---~~~~~-------- 129 (244)
.+.+.+.......++.+|||+|||+|.+++.++.. . +.+|+|+|+|+.++ +.+++|+..+ ++..+
T Consensus 38 ~l~~~~l~~~~~~~~~~vLD~gcGsG~~~~~la~~~~~~~~~v~gvDis~~~l-~~A~~~~~~~~~~~~~~~~~~~~~~~ 116 (250)
T 1o9g_A 38 EIFQRALARLPGDGPVTLWDPCCGSGYLLTVLGLLHRRSLRQVIASDVDPAPL-ELAAKNLALLSPAGLTARELERREQS 116 (250)
T ss_dssp HHHHHHHHTSSCCSCEEEEETTCTTSHHHHHHHHHTGGGEEEEEEEESCHHHH-HHHHHHHHTTSHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhcccCCCCeEEECCCCCCHHHHHHHHHhccCCCeEEEEECCHHHH-HHHHHHHHHhhhccccccchhhhhhh
Confidence 34444444333335679999999999999999876 3 57899999999987 7888776654 22111
Q ss_pred -----------------cc-------------eEeeecCCCCCC----CCCCccEEEEcccccCCcC------hHHHHHH
Q 026036 130 -----------------LP-------------HIKHSWGDAFPI----PNPDWDLILASDILLYVKQ------YSNLIKS 169 (244)
Q Consensus 130 -----------------~~-------------~~~~~~~~~~~~----~~~~fD~I~~~~~l~~~~~------~~~l~~~ 169 (244)
+. .+..+..+..+. ...+||+|+++.++..... .......
T Consensus 117 ~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~fD~Iv~npp~~~~~~~~~~~~~~~~~~~ 196 (250)
T 1o9g_A 117 ERFGKPSYLEAAQAARRLRERLTAEGGALPCAIRTADVFDPRALSAVLAGSAPDVVLTDLPYGERTHWEGQVPGQPVAGL 196 (250)
T ss_dssp HHHCCHHHHHHHHHHHHHHHHHHHTTSSCCEEEEECCTTCGGGHHHHHTTCCCSEEEEECCGGGSSSSSSCCCHHHHHHH
T ss_pred hhcccccchhhhhhhhhhhhhccccccccccceeecccccccccccccCCCCceEEEeCCCeeccccccccccccHHHHH
Confidence 22 333333222110 2348999999877533222 3556689
Q ss_pred HHHHHHhcCCCCceEee
Q 026036 170 LSVLLKSYKPKDSQVGH 186 (244)
Q Consensus 170 l~~~~~~lk~gG~~~~~ 186 (244)
++++.+.|+|||+++++
T Consensus 197 l~~~~~~LkpgG~l~~~ 213 (250)
T 1o9g_A 197 LRSLASALPAHAVIAVT 213 (250)
T ss_dssp HHHHHHHSCTTCEEEEE
T ss_pred HHHHHHhcCCCcEEEEe
Confidence 99999999999998884
|
| >2pxx_A Uncharacterized protein MGC2408; structural genomics consortium, SGC, methyltransferase, LOC84291, transferase; HET: SAH; 1.30A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.56 E-value=1.8e-14 Score=113.08 Aligned_cols=120 Identities=18% Similarity=0.217 Sum_probs=86.2
Q ss_pred HHHHHHHhhccCcccCCeEEEeCCCCcHHHHHHHHhCCCeEEEEeCChHHHHHHHHHhHHhcCCCCCcceEeeecCCCCC
Q 026036 63 FSFAEWLMHHREWIERRRCIELGSGTGALAIFLRKAMNLDITTSDYNDQEIEDNIAYNSTTNGITPALPHIKHSWGDAFP 142 (244)
Q Consensus 63 ~~l~~~~~~~~~~~~~~~VLdlG~G~G~~~~~~a~~~~~~v~~~D~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 142 (244)
..+.+++.... .++.+|||+|||+|.++..+++.+..+|+++|+++.++ +.++++... . .++..+..+..+ ++
T Consensus 30 ~~~~~~l~~~~--~~~~~vLdiGcG~G~~~~~l~~~~~~~v~~~D~s~~~~-~~a~~~~~~--~-~~i~~~~~d~~~-~~ 102 (215)
T 2pxx_A 30 SSFRALLEPEL--RPEDRILVLGCGNSALSYELFLGGFPNVTSVDYSSVVV-AAMQACYAH--V-PQLRWETMDVRK-LD 102 (215)
T ss_dssp HHHHHHHGGGC--CTTCCEEEETCTTCSHHHHHHHTTCCCEEEEESCHHHH-HHHHHHTTT--C-TTCEEEECCTTS-CC
T ss_pred HHHHHHHHHhc--CCCCeEEEECCCCcHHHHHHHHcCCCcEEEEeCCHHHH-HHHHHhccc--C-CCcEEEEcchhc-CC
Confidence 34666666543 46789999999999999999887555899999999987 777766543 1 223344444332 34
Q ss_pred CCCCCccEEEEcccccCC------------cChHHHHHHHHHHHHhcCCCCceEeeccc
Q 026036 143 IPNPDWDLILASDILLYV------------KQYSNLIKSLSVLLKSYKPKDSQVGHLTK 189 (244)
Q Consensus 143 ~~~~~fD~I~~~~~l~~~------------~~~~~l~~~l~~~~~~lk~gG~~~~~~~~ 189 (244)
+.+++||+|+++.++.+. .......+.++++.++|||||++++..+.
T Consensus 103 ~~~~~fD~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~li~~~~~ 161 (215)
T 2pxx_A 103 FPSASFDVVLEKGTLDALLAGERDPWTVSSEGVHTVDQVLSEVSRVLVPGGRFISMTSA 161 (215)
T ss_dssp SCSSCEEEEEEESHHHHHTTTCSCTTSCCHHHHHHHHHHHHHHHHHEEEEEEEEEEESC
T ss_pred CCCCcccEEEECcchhhhccccccccccccchhHHHHHHHHHHHHhCcCCCEEEEEeCC
Confidence 556789999998876221 11346679999999999999999887443
|
| >2y1w_A Histone-arginine methyltransferase CARM1; histone modification; HET: SFG 849; 2.10A {Homo sapiens} PDB: 2y1x_A* 3b3f_A* 3b3g_A 2v74_B* 2v7e_A | Back alignment and structure |
|---|
Probab=99.55 E-value=2.1e-14 Score=121.53 Aligned_cols=118 Identities=14% Similarity=0.206 Sum_probs=89.5
Q ss_pred HHHHHHhhccCcccCCeEEEeCCCCcHHHHHHHHhCCCeEEEEeCChHHHHHHHHHhHHhcCCCCCcceEeeecCCCCCC
Q 026036 64 SFAEWLMHHREWIERRRCIELGSGTGALAIFLRKAMNLDITTSDYNDQEIEDNIAYNSTTNGITPALPHIKHSWGDAFPI 143 (244)
Q Consensus 64 ~l~~~~~~~~~~~~~~~VLdlG~G~G~~~~~~a~~~~~~v~~~D~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 143 (244)
...+.+.......++.+|||||||+|.++..+++.+..+|+++|+++ ++ +.+++++..+++..++..+..+..+. +.
T Consensus 37 ~y~~~i~~~l~~~~~~~VLDiGcGtG~ls~~la~~g~~~V~~vD~s~-~~-~~a~~~~~~~~l~~~v~~~~~d~~~~-~~ 113 (348)
T 2y1w_A 37 TYQRAILQNHTDFKDKIVLDVGCGSGILSFFAAQAGARKIYAVEAST-MA-QHAEVLVKSNNLTDRIVVIPGKVEEV-SL 113 (348)
T ss_dssp HHHHHHHHTGGGTTTCEEEEETCTTSHHHHHHHHTTCSEEEEEECST-HH-HHHHHHHHHTTCTTTEEEEESCTTTC-CC
T ss_pred HHHHHHHhccccCCcCEEEEcCCCccHHHHHHHhCCCCEEEEECCHH-HH-HHHHHHHHHcCCCCcEEEEEcchhhC-CC
Confidence 34455555556668899999999999999999887667999999996 66 78888888888766666665554332 22
Q ss_pred CCCCccEEEEcccccCCcChHHHHHHHHHHHHhcCCCCceEee
Q 026036 144 PNPDWDLILASDILLYVKQYSNLIKSLSVLLKSYKPKDSQVGH 186 (244)
Q Consensus 144 ~~~~fD~I~~~~~l~~~~~~~~l~~~l~~~~~~lk~gG~~~~~ 186 (244)
.++||+|++..+.++ ...+.....+..+.+.|||||.+++.
T Consensus 114 -~~~~D~Ivs~~~~~~-~~~~~~~~~l~~~~~~LkpgG~li~~ 154 (348)
T 2y1w_A 114 -PEQVDIIISEPMGYM-LFNERMLESYLHAKKYLKPSGNMFPT 154 (348)
T ss_dssp -SSCEEEEEECCCBTT-BTTTSHHHHHHHGGGGEEEEEEEESC
T ss_pred -CCceeEEEEeCchhc-CChHHHHHHHHHHHhhcCCCeEEEEe
Confidence 257999999888743 33445567888899999999998865
|
| >3htx_A HEN1; HEN1, small RNA methyltransferase, protein-RNA complex; HET: SAH; 3.10A {Arabidopsis thaliana} | Back alignment and structure |
|---|
Probab=99.55 E-value=3.9e-14 Score=128.99 Aligned_cols=128 Identities=14% Similarity=0.085 Sum_probs=90.5
Q ss_pred chHHHHHHHHhhccCcccCCeEEEeCCCCcHHHHHHHHhCC--CeEEEEeCChHHHHHHHHHhHHhc--CCCCCcceEee
Q 026036 60 PGTFSFAEWLMHHREWIERRRCIELGSGTGALAIFLRKAMN--LDITTSDYNDQEIEDNIAYNSTTN--GITPALPHIKH 135 (244)
Q Consensus 60 ~~~~~l~~~~~~~~~~~~~~~VLdlG~G~G~~~~~~a~~~~--~~v~~~D~~~~~l~~~~~~~~~~~--~~~~~~~~~~~ 135 (244)
|-.....+++.......++.+|||||||+|.++..+++.++ .+|+|+|+++.|+ +.+++++... ........+.+
T Consensus 704 PL~eqRle~LLelL~~~~g~rVLDVGCGTG~lai~LAr~g~p~a~VtGVDIS~emL-e~AReRLa~~lnAkr~gl~nVef 782 (950)
T 3htx_A 704 PLSKQRVEYALKHIRESSASTLVDFGCGSGSLLDSLLDYPTSLQTIIGVDISPKGL-ARAAKMLHVKLNKEACNVKSATL 782 (950)
T ss_dssp CHHHHHHHHHHHHHHHSCCSEEEEETCSSSHHHHHHTSSCCCCCEEEEEESCHHHH-HHHHHHHHHHTTTTCSSCSEEEE
T ss_pred hHHHHHHHHHHHHhcccCCCEEEEECCCCCHHHHHHHHhCCCCCeEEEEECCHHHH-HHHHHHhhhccchhhcCCCceEE
Confidence 44445556666555555788999999999999999988753 7999999999997 6776644321 10111223444
Q ss_pred ecCCC--CCCCCCCccEEEEcccccCCcChHHHHHHHHHHHHhcCCCCceEeecccc
Q 026036 136 SWGDA--FPIPNPDWDLILASDILLYVKQYSNLIKSLSVLLKSYKPKDSQVGHLTKN 190 (244)
Q Consensus 136 ~~~~~--~~~~~~~fD~I~~~~~l~~~~~~~~l~~~l~~~~~~lk~gG~~~~~~~~~ 190 (244)
..++. ++..+++||+|++..++ +|...+.....++++.++|||| .+++.++..
T Consensus 783 iqGDa~dLp~~d~sFDlVV~~eVL-eHL~dp~l~~~L~eI~RvLKPG-~LIISTPN~ 837 (950)
T 3htx_A 783 YDGSILEFDSRLHDVDIGTCLEVI-EHMEEDQACEFGEKVLSLFHPK-LLIVSTPNY 837 (950)
T ss_dssp EESCTTSCCTTSCSCCEEEEESCG-GGSCHHHHHHHHHHHHHTTCCS-EEEEEECBG
T ss_pred EECchHhCCcccCCeeEEEEeCch-hhCChHHHHHHHHHHHHHcCCC-EEEEEecCc
Confidence 44433 44556789999999999 5555566668999999999998 777765544
|
| >3mb5_A SAM-dependent methyltransferase; RNA methyltransferase, M1A, TRMI, intermolecular contacts, R specificity, tetramer, disulfide bond; HET: SAM; 1.60A {Pyrococcus abyssi} PDB: 3lga_A* 3lhd_C* | Back alignment and structure |
|---|
Probab=99.55 E-value=2.2e-14 Score=115.95 Aligned_cols=132 Identities=13% Similarity=0.057 Sum_probs=96.4
Q ss_pred HHhhccCcccCCeEEEeCCCCcHHHHHHHHh-C-CCeEEEEeCChHHHHHHHHHhHHhcCCCCCcceEeeecCCCCCCCC
Q 026036 68 WLMHHREWIERRRCIELGSGTGALAIFLRKA-M-NLDITTSDYNDQEIEDNIAYNSTTNGITPALPHIKHSWGDAFPIPN 145 (244)
Q Consensus 68 ~~~~~~~~~~~~~VLdlG~G~G~~~~~~a~~-~-~~~v~~~D~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 145 (244)
++.......++.+|||+|||+|.++..+++. + +.+|+++|+++.++ +.++++...+++++++..+..+..+. +..
T Consensus 84 ~i~~~~~~~~~~~vldiG~G~G~~~~~l~~~~~~~~~v~~~D~~~~~~-~~a~~~~~~~~~~~~v~~~~~d~~~~--~~~ 160 (255)
T 3mb5_A 84 LIVAYAGISPGDFIVEAGVGSGALTLFLANIVGPEGRVVSYEIREDFA-KLAWENIKWAGFDDRVTIKLKDIYEG--IEE 160 (255)
T ss_dssp HHHHHTTCCTTCEEEEECCTTSHHHHHHHHHHCTTSEEEEECSCHHHH-HHHHHHHHHHTCTTTEEEECSCGGGC--CCC
T ss_pred HHHHhhCCCCCCEEEEecCCchHHHHHHHHHhCCCeEEEEEecCHHHH-HHHHHHHHHcCCCCceEEEECchhhc--cCC
Confidence 4444456678899999999999999999887 4 68999999999987 88888888877755455555444433 345
Q ss_pred CCccEEEEcccccCCcChHHHHHHHHHHHHhcCCCCceEeecccccCCCCCCCCCCCeEEEeeeeccCccchhhHHHHHh
Q 026036 146 PDWDLILASDILLYVKQYSNLIKSLSVLLKSYKPKDSQVGHLTKNEQGEGTEGLPWPAFLMSWRRRIGKEDETIFFTSCE 225 (244)
Q Consensus 146 ~~fD~I~~~~~l~~~~~~~~l~~~l~~~~~~lk~gG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 225 (244)
++||+|+++.. .. ...++++.+.|+|||++++..+.. .....+.+.++
T Consensus 161 ~~~D~v~~~~~-----~~---~~~l~~~~~~L~~gG~l~~~~~~~------------------------~~~~~~~~~l~ 208 (255)
T 3mb5_A 161 ENVDHVILDLP-----QP---ERVVEHAAKALKPGGFFVAYTPCS------------------------NQVMRLHEKLR 208 (255)
T ss_dssp CSEEEEEECSS-----CG---GGGHHHHHHHEEEEEEEEEEESSH------------------------HHHHHHHHHHH
T ss_pred CCcCEEEECCC-----CH---HHHHHHHHHHcCCCCEEEEEECCH------------------------HHHHHHHHHHH
Confidence 67999998422 12 267889999999999887752111 12356778888
Q ss_pred hcC--CeEEEe
Q 026036 226 NAG--LEVKHL 234 (244)
Q Consensus 226 ~~G--f~v~~~ 234 (244)
++| |...++
T Consensus 209 ~~g~~f~~~~~ 219 (255)
T 3mb5_A 209 EFKDYFMKPRT 219 (255)
T ss_dssp HTGGGBSCCEE
T ss_pred HcCCCccccEE
Confidence 888 764443
|
| >3u81_A Catechol O-methyltransferase; neurotransmitter degradation, transferase transferase inhibitor complex; HET: SAH; 1.13A {Rattus norvegicus} SCOP: c.66.1.1 PDB: 3nwe_A* 3oe5_A* 3ozr_A* 3oe4_A* 3ozt_A* 3ozs_A* 3r6t_A* 3hvi_A* 1jr4_A* 1vid_A* 1h1d_A* 2cl5_A* 3hvh_A* 3hvj_A* 3hvk_A* 3nw9_A* 3nwb_A* 3s68_A* 2zlb_A 2zth_A* ... | Back alignment and structure |
|---|
Probab=99.55 E-value=1e-14 Score=115.61 Aligned_cols=107 Identities=12% Similarity=0.080 Sum_probs=78.6
Q ss_pred cccCCeEEEeCCCCcHHHHHHHHhC--CCeEEEEeCChHHHHHHHHHhHHhcCCCCCcceEeeecCCCCCCC-----CCC
Q 026036 75 WIERRRCIELGSGTGALAIFLRKAM--NLDITTSDYNDQEIEDNIAYNSTTNGITPALPHIKHSWGDAFPIP-----NPD 147 (244)
Q Consensus 75 ~~~~~~VLdlG~G~G~~~~~~a~~~--~~~v~~~D~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~ 147 (244)
..++.+|||||||+|..++.+++.. +.+|+++|+++.++ +.+++|+..+++..++..+..+..+.++.. .++
T Consensus 56 ~~~~~~vLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~-~~a~~~~~~~~~~~~v~~~~~d~~~~l~~~~~~~~~~~ 134 (221)
T 3u81_A 56 EYSPSLVLELGAYCGYSAVRMARLLQPGARLLTMEINPDCA-AITQQMLNFAGLQDKVTILNGASQDLIPQLKKKYDVDT 134 (221)
T ss_dssp HHCCSEEEEECCTTSHHHHHHHTTSCTTCEEEEEESCHHHH-HHHHHHHHHHTCGGGEEEEESCHHHHGGGTTTTSCCCC
T ss_pred hcCCCEEEEECCCCCHHHHHHHHhCCCCCEEEEEeCChHHH-HHHHHHHHHcCCCCceEEEECCHHHHHHHHHHhcCCCc
Confidence 3467899999999999999998854 67999999999987 888888888777544554444332222222 268
Q ss_pred ccEEEEcccccCCcChHHHHHHHHHHHHhcCCCCceEee
Q 026036 148 WDLILASDILLYVKQYSNLIKSLSVLLKSYKPKDSQVGH 186 (244)
Q Consensus 148 fD~I~~~~~l~~~~~~~~l~~~l~~~~~~lk~gG~~~~~ 186 (244)
||+|++.... .......+.++.+ +.|||||.+++.
T Consensus 135 fD~V~~d~~~---~~~~~~~~~~~~~-~~LkpgG~lv~~ 169 (221)
T 3u81_A 135 LDMVFLDHWK---DRYLPDTLLLEKC-GLLRKGTVLLAD 169 (221)
T ss_dssp CSEEEECSCG---GGHHHHHHHHHHT-TCCCTTCEEEES
T ss_pred eEEEEEcCCc---ccchHHHHHHHhc-cccCCCeEEEEe
Confidence 9999987654 2234444667777 999999988775
|
| >3p2e_A 16S rRNA methylase; methyltransferase, transferase, NPMA; HET: SAH; 1.68A {Escherichia coli} PDB: 3p2i_A 3p2k_A* 3pb3_A* 3mte_A* | Back alignment and structure |
|---|
Probab=99.55 E-value=7.4e-15 Score=116.90 Aligned_cols=149 Identities=15% Similarity=0.031 Sum_probs=83.3
Q ss_pred cCCeEEEeCCCCcHHHHHHHHhC-CCeEEEEeCC-hHHHHHHH---HHhHHhcCCCCCcceEeeecCCCCCCCCCCccEE
Q 026036 77 ERRRCIELGSGTGALAIFLRKAM-NLDITTSDYN-DQEIEDNI---AYNSTTNGITPALPHIKHSWGDAFPIPNPDWDLI 151 (244)
Q Consensus 77 ~~~~VLdlG~G~G~~~~~~a~~~-~~~v~~~D~~-~~~l~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fD~I 151 (244)
++.+|||||||+|.++..+++.. +.+|+|+|+| +.|+ +.+ ++++...+++ .+.+..++....+...+|.|
T Consensus 24 ~~~~vLDiGCG~G~~~~~la~~~~~~~v~GvD~s~~~ml-~~A~~A~~~~~~~~~~----~v~~~~~d~~~l~~~~~d~v 98 (225)
T 3p2e_A 24 FDRVHIDLGTGDGRNIYKLAINDQNTFYIGIDPVKENLF-DISKKIIKKPSKGGLS----NVVFVIAAAESLPFELKNIA 98 (225)
T ss_dssp CSEEEEEETCTTSHHHHHHHHTCTTEEEEEECSCCGGGH-HHHHHHTSCGGGTCCS----SEEEECCBTTBCCGGGTTCE
T ss_pred CCCEEEEEeccCcHHHHHHHHhCCCCEEEEEeCCHHHHH-HHHHHHHHHHHHcCCC----CeEEEEcCHHHhhhhccCeE
Confidence 66799999999999999998644 6789999999 5555 554 5555555552 23333333322222233544
Q ss_pred EEcccccCCcCh-----HHHHHHHHHHHHhcCCCCceEeecccccCCC-CCCCCCCCeEEEeeeeccCccchhhHHHHHh
Q 026036 152 LASDILLYVKQY-----SNLIKSLSVLLKSYKPKDSQVGHLTKNEQGE-GTEGLPWPAFLMSWRRRIGKEDETIFFTSCE 225 (244)
Q Consensus 152 ~~~~~l~~~~~~-----~~l~~~l~~~~~~lk~gG~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 225 (244)
.+..+.+.+... ......+++++++|||||++++.+....... ...... ......+.+.. ..++.+.++
T Consensus 99 ~~i~~~~~~~~~~~~~~~~~~~~l~~~~r~LkpGG~l~i~~~~~~~~~~~~~~~~---~~~~~~~~~~~--~~el~~~l~ 173 (225)
T 3p2e_A 99 DSISILFPWGTLLEYVIKPNRDILSNVADLAKKEAHFEFVTTYSDSYEEAEIKKR---GLPLLSKAYFL--SEQYKAELS 173 (225)
T ss_dssp EEEEEESCCHHHHHHHHTTCHHHHHHHHTTEEEEEEEEEEECCCC-----------------CCHHHHH--SHHHHHHHH
T ss_pred EEEEEeCCCcHHhhhhhcchHHHHHHHHHhcCCCcEEEEEEeccccchhchhhhc---CCCCCChhhcc--hHHHHHHHH
Confidence 444333221111 0123678999999999999988432222110 000000 00000111111 124888999
Q ss_pred hcCCeEEEec
Q 026036 226 NAGLEVKHLG 235 (244)
Q Consensus 226 ~~Gf~v~~~~ 235 (244)
++||++..+.
T Consensus 174 ~aGf~v~~~~ 183 (225)
T 3p2e_A 174 NSGFRIDDVK 183 (225)
T ss_dssp HHTCEEEEEE
T ss_pred HcCCCeeeee
Confidence 9999988765
|
| >1vlm_A SAM-dependent methyltransferase; possible histamine methyltransferase, structural genomics, JCSG, protein struc initiative, PSI; 2.20A {Thermotoga maritima} SCOP: c.66.1.41 | Back alignment and structure |
|---|
Probab=99.55 E-value=8.7e-15 Score=115.80 Aligned_cols=138 Identities=16% Similarity=0.196 Sum_probs=92.1
Q ss_pred cCCeEEEeCCCCcHHHHHHHHhCCCeEEEEeCChHHHHHHHHHhHHhcCCCCCcceEeeecCCCCCCCCCCccEEEEccc
Q 026036 77 ERRRCIELGSGTGALAIFLRKAMNLDITTSDYNDQEIEDNIAYNSTTNGITPALPHIKHSWGDAFPIPNPDWDLILASDI 156 (244)
Q Consensus 77 ~~~~VLdlG~G~G~~~~~~a~~~~~~v~~~D~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fD~I~~~~~ 156 (244)
++.+|||+|||+|.++..++.. +++|+++.++ +.++.+ ++ ..+..+.. .++...++||+|++.++
T Consensus 47 ~~~~vLDiG~G~G~~~~~l~~~-----~~vD~s~~~~-~~a~~~----~~----~~~~~d~~-~~~~~~~~fD~v~~~~~ 111 (219)
T 1vlm_A 47 PEGRGVEIGVGTGRFAVPLKIK-----IGVEPSERMA-EIARKR----GV----FVLKGTAE-NLPLKDESFDFALMVTT 111 (219)
T ss_dssp CSSCEEEETCTTSTTHHHHTCC-----EEEESCHHHH-HHHHHT----TC----EEEECBTT-BCCSCTTCEEEEEEESC
T ss_pred CCCcEEEeCCCCCHHHHHHHHH-----hccCCCHHHH-HHHHhc----CC----EEEEcccc-cCCCCCCCeeEEEEcch
Confidence 3789999999999998877543 9999999987 666654 22 33333332 24555678999999999
Q ss_pred ccCCcChHHHHHHHHHHHHhcCCCCceEeecccccCCCCC----CCCCCCeEEEeeeeccCccchhhHHHHHhhcCCeEE
Q 026036 157 LLYVKQYSNLIKSLSVLLKSYKPKDSQVGHLTKNEQGEGT----EGLPWPAFLMSWRRRIGKEDETIFFTSCENAGLEVK 232 (244)
Q Consensus 157 l~~~~~~~~l~~~l~~~~~~lk~gG~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gf~v~ 232 (244)
+++. ++....++++.++|+|||.+++........... .....+ ...+. +. .+..++.++++++||+++
T Consensus 112 l~~~---~~~~~~l~~~~~~L~pgG~l~i~~~~~~~~~~~~~~~~~~~~~--~~~~~-~~--~~~~~l~~~l~~~Gf~~~ 183 (219)
T 1vlm_A 112 ICFV---DDPERALKEAYRILKKGGYLIVGIVDRESFLGREYEKNKEKSV--FYKNA-RF--FSTEELMDLMRKAGFEEF 183 (219)
T ss_dssp GGGS---SCHHHHHHHHHHHEEEEEEEEEEEECSSSHHHHHHHHTTTC-C--CSTTC-CC--CCHHHHHHHHHHTTCEEE
T ss_pred Hhhc---cCHHHHHHHHHHHcCCCcEEEEEEeCCccHHHHHHHHHhcCcc--hhccc-cc--CCHHHHHHHHHHCCCeEE
Confidence 8443 344589999999999999999885433211000 000000 00011 11 235889999999999998
Q ss_pred EeccE
Q 026036 233 HLGSR 237 (244)
Q Consensus 233 ~~~~~ 237 (244)
.+.+.
T Consensus 184 ~~~~~ 188 (219)
T 1vlm_A 184 KVVQT 188 (219)
T ss_dssp EEEEE
T ss_pred EEecc
Confidence 87653
|
| >2fca_A TRNA (guanine-N(7)-)-methyltransferase; 2.10A {Bacillus subtilis} SCOP: c.66.1.53 | Back alignment and structure |
|---|
Probab=99.54 E-value=1.2e-13 Score=108.96 Aligned_cols=107 Identities=9% Similarity=0.014 Sum_probs=76.4
Q ss_pred cCCeEEEeCCCCcHHHHHHHHhC-CCeEEEEeCChHHHHHHHHHhHHhcCCCCCcceEeeecCCCCC--CCCCCccEEEE
Q 026036 77 ERRRCIELGSGTGALAIFLRKAM-NLDITTSDYNDQEIEDNIAYNSTTNGITPALPHIKHSWGDAFP--IPNPDWDLILA 153 (244)
Q Consensus 77 ~~~~VLdlG~G~G~~~~~~a~~~-~~~v~~~D~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~fD~I~~ 153 (244)
++.+|||||||+|.+++.+++.. +.+|+|+|+++.++ +.+++++..++++ ++..+..+..+ ++ +.+++||.|++
T Consensus 38 ~~~~vLDiGcG~G~~~~~la~~~p~~~v~giD~s~~~l-~~a~~~~~~~~~~-nv~~~~~d~~~-l~~~~~~~~~d~v~~ 114 (213)
T 2fca_A 38 DNPIHIEVGTGKGQFISGMAKQNPDINYIGIELFKSVI-VTAVQKVKDSEAQ-NVKLLNIDADT-LTDVFEPGEVKRVYL 114 (213)
T ss_dssp CCCEEEEECCTTSHHHHHHHHHCTTSEEEEECSCHHHH-HHHHHHHHHSCCS-SEEEECCCGGG-HHHHCCTTSCCEEEE
T ss_pred CCceEEEEecCCCHHHHHHHHHCCCCCEEEEEechHHH-HHHHHHHHHcCCC-CEEEEeCCHHH-HHhhcCcCCcCEEEE
Confidence 56799999999999999998876 67899999999997 7888888777662 23333333322 11 34568999988
Q ss_pred cccccCCcC-h--H--HHHHHHHHHHHhcCCCCceEee
Q 026036 154 SDILLYVKQ-Y--S--NLIKSLSVLLKSYKPKDSQVGH 186 (244)
Q Consensus 154 ~~~l~~~~~-~--~--~l~~~l~~~~~~lk~gG~~~~~ 186 (244)
+.+..+... . . .....++++.++|||||.+++.
T Consensus 115 ~~~~p~~~~~~~~~rl~~~~~l~~~~~~LkpgG~l~~~ 152 (213)
T 2fca_A 115 NFSDPWPKKRHEKRRLTYSHFLKKYEEVMGKGGSIHFK 152 (213)
T ss_dssp ESCCCCCSGGGGGGSTTSHHHHHHHHHHHTTSCEEEEE
T ss_pred ECCCCCcCccccccccCcHHHHHHHHHHcCCCCEEEEE
Confidence 654311110 0 0 0237889999999999998876
|
| >3ntv_A MW1564 protein; rossmann fold, putative methyltransferase, transferase; HET: MSE; 1.55A {Staphylococcus aureus} | Back alignment and structure |
|---|
Probab=99.54 E-value=1.2e-14 Score=116.13 Aligned_cols=113 Identities=13% Similarity=0.174 Sum_probs=84.0
Q ss_pred HHHhhccCcccCCeEEEeCCCCcHHHHHHHHhC-CCeEEEEeCChHHHHHHHHHhHHhcCCCCCcceEeeecCCCCC-CC
Q 026036 67 EWLMHHREWIERRRCIELGSGTGALAIFLRKAM-NLDITTSDYNDQEIEDNIAYNSTTNGITPALPHIKHSWGDAFP-IP 144 (244)
Q Consensus 67 ~~~~~~~~~~~~~~VLdlG~G~G~~~~~~a~~~-~~~v~~~D~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~ 144 (244)
+++.......++.+|||||||+|..++.++... +.+|+++|+++.++ +.++++....++..++..+..+..+.++ ..
T Consensus 61 ~~l~~~~~~~~~~~vLDiG~G~G~~~~~la~~~~~~~v~~vD~~~~~~-~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~ 139 (232)
T 3ntv_A 61 DLIKQLIRMNNVKNILEIGTAIGYSSMQFASISDDIHVTTIERNETMI-QYAKQNLATYHFENQVRIIEGNALEQFENVN 139 (232)
T ss_dssp HHHHHHHHHHTCCEEEEECCSSSHHHHHHHTTCTTCEEEEEECCHHHH-HHHHHHHHHTTCTTTEEEEESCGGGCHHHHT
T ss_pred HHHHHHHhhcCCCEEEEEeCchhHHHHHHHHhCCCCEEEEEECCHHHH-HHHHHHHHHcCCCCcEEEEECCHHHHHHhhc
Confidence 333333334467899999999999999998854 78999999999987 8888888887775555555544434333 33
Q ss_pred CCCccEEEEcccccCCcChHHHHHHHHHHHHhcCCCCceEee
Q 026036 145 NPDWDLILASDILLYVKQYSNLIKSLSVLLKSYKPKDSQVGH 186 (244)
Q Consensus 145 ~~~fD~I~~~~~l~~~~~~~~l~~~l~~~~~~lk~gG~~~~~ 186 (244)
.++||+|++.... ......++.+.+.|||||.+++.
T Consensus 140 ~~~fD~V~~~~~~------~~~~~~l~~~~~~LkpgG~lv~d 175 (232)
T 3ntv_A 140 DKVYDMIFIDAAK------AQSKKFFEIYTPLLKHQGLVITD 175 (232)
T ss_dssp TSCEEEEEEETTS------SSHHHHHHHHGGGEEEEEEEEEE
T ss_pred cCCccEEEEcCcH------HHHHHHHHHHHHhcCCCeEEEEe
Confidence 5789999975432 23447889999999999988774
|
| >3k6r_A Putative transferase PH0793; structural genomics, PSI structure initiative, midwest center for structural genomic unknown function; 2.10A {Pyrococcus horikoshii} PDB: 3a25_A* 3a26_A* | Back alignment and structure |
|---|
Probab=99.54 E-value=7.1e-14 Score=114.12 Aligned_cols=132 Identities=14% Similarity=0.066 Sum_probs=93.8
Q ss_pred ccCCeEEEeCCCCcHHHHHHHHhCCCeEEEEeCChHHHHHHHHHhHHhcCCCCCcceEeeecCCCCCCCCCCccEEEEcc
Q 026036 76 IERRRCIELGSGTGALAIFLRKAMNLDITTSDYNDQEIEDNIAYNSTTNGITPALPHIKHSWGDAFPIPNPDWDLILASD 155 (244)
Q Consensus 76 ~~~~~VLdlG~G~G~~~~~~a~~~~~~v~~~D~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fD~I~~~~ 155 (244)
.+|.+|||+|||+|.+++.+|+.+.++|+++|+++.++ +.+++|+..|++.+++..+..|..+.. ..+.||.|+++.
T Consensus 124 ~~g~~VlD~~aG~G~~~i~~a~~g~~~V~avD~np~a~-~~~~~N~~~N~v~~~v~~~~~D~~~~~--~~~~~D~Vi~~~ 200 (278)
T 3k6r_A 124 KPDELVVDMFAGIGHLSLPIAVYGKAKVIAIEKDPYTF-KFLVENIHLNKVEDRMSAYNMDNRDFP--GENIADRILMGY 200 (278)
T ss_dssp CTTCEEEETTCTTTTTTHHHHHHTCCEEEEECCCHHHH-HHHHHHHHHTTCTTTEEEECSCTTTCC--CCSCEEEEEECC
T ss_pred CCCCEEEEecCcCcHHHHHHHHhcCCeEEEEECCHHHH-HHHHHHHHHcCCCCcEEEEeCcHHHhc--cccCCCEEEECC
Confidence 47899999999999999999988778999999999987 999999999999776666554443321 235799999976
Q ss_pred cccCCcChHHHHHHHHHHHHhcCCCCceEeecccccCCCCCCCCCCCeEEEeeeeccCccchhhHHHHHhhcCCeEEEec
Q 026036 156 ILLYVKQYSNLIKSLSVLLKSYKPKDSQVGHLTKNEQGEGTEGLPWPAFLMSWRRRIGKEDETIFFTSCENAGLEVKHLG 235 (244)
Q Consensus 156 ~l~~~~~~~~l~~~l~~~~~~lk~gG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gf~v~~~~ 235 (244)
+. .. . ..+..+.++||+||.+.+... ...........+.+.+.+++.|++++.+.
T Consensus 201 p~-~~---~---~~l~~a~~~lk~gG~ih~~~~------------------~~e~~~~~~~~e~i~~~~~~~g~~v~~~~ 255 (278)
T 3k6r_A 201 VV-RT---H---EFIPKALSIAKDGAIIHYHNT------------------VPEKLMPREPFETFKRITKEYGYDVEKLN 255 (278)
T ss_dssp CS-SG---G---GGHHHHHHHEEEEEEEEEEEE------------------EEGGGTTTTTHHHHHHHHHHTTCEEEEEE
T ss_pred CC-cH---H---HHHHHHHHHcCCCCEEEEEee------------------ecccccchhHHHHHHHHHHHcCCcEEEEE
Confidence 64 21 1 445567789999996543211 11111111123556677888999877554
|
| >1ws6_A Methyltransferase; structural genomics, riken structural genomics/proteomics initiative, RSGI; 2.50A {Thermus thermophilus} SCOP: c.66.1.46 | Back alignment and structure |
|---|
Probab=99.54 E-value=2e-15 Score=114.46 Aligned_cols=124 Identities=11% Similarity=0.118 Sum_probs=83.0
Q ss_pred eechHHHHHHHHhhccCc-c-cCCeEEEeCCCCcHHHHHHHHhCCCeEEEEeCChHHHHHHHHHhHHhcCCCCCcceEee
Q 026036 58 LWPGTFSFAEWLMHHREW-I-ERRRCIELGSGTGALAIFLRKAMNLDITTSDYNDQEIEDNIAYNSTTNGITPALPHIKH 135 (244)
Q Consensus 58 ~w~~~~~l~~~~~~~~~~-~-~~~~VLdlG~G~G~~~~~~a~~~~~~v~~~D~~~~~l~~~~~~~~~~~~~~~~~~~~~~ 135 (244)
..|....+.+.+...... . ++.+|||+|||+|.++..+++. +.+|+++|+++.++ +.+++|...+++ ++..+..
T Consensus 20 ~~~~~~~~~~~~~~~~~~~~~~~~~vLD~GcG~G~~~~~l~~~-~~~v~~vD~~~~~~-~~a~~~~~~~~~--~~~~~~~ 95 (171)
T 1ws6_A 20 ARPSPVRLRKALFDYLRLRYPRRGRFLDPFAGSGAVGLEAASE-GWEAVLVEKDPEAV-RLLKENVRRTGL--GARVVAL 95 (171)
T ss_dssp CCCCCHHHHHHHHHHHHHHCTTCCEEEEETCSSCHHHHHHHHT-TCEEEEECCCHHHH-HHHHHHHHHHTC--CCEEECS
T ss_pred CCCCHHHHHHHHHHHHHhhccCCCeEEEeCCCcCHHHHHHHHC-CCeEEEEeCCHHHH-HHHHHHHHHcCC--ceEEEec
Confidence 334445555554443322 2 6789999999999999999887 55599999999987 888888877665 3334433
Q ss_pred ecCCCCCC---CCCCccEEEEcccccCCcChHHHHHHHHHHH--HhcCCCCceEeecccc
Q 026036 136 SWGDAFPI---PNPDWDLILASDILLYVKQYSNLIKSLSVLL--KSYKPKDSQVGHLTKN 190 (244)
Q Consensus 136 ~~~~~~~~---~~~~fD~I~~~~~l~~~~~~~~l~~~l~~~~--~~lk~gG~~~~~~~~~ 190 (244)
+..+..+. ..++||+|+++.++ + ...+ +.++.+. ++|+|||.+++.+...
T Consensus 96 d~~~~~~~~~~~~~~~D~i~~~~~~-~-~~~~---~~~~~~~~~~~L~~gG~~~~~~~~~ 150 (171)
T 1ws6_A 96 PVEVFLPEAKAQGERFTVAFMAPPY-A-MDLA---ALFGELLASGLVEAGGLYVLQHPKD 150 (171)
T ss_dssp CHHHHHHHHHHTTCCEEEEEECCCT-T-SCTT---HHHHHHHHHTCEEEEEEEEEEEETT
T ss_pred cHHHHHHhhhccCCceEEEEECCCC-c-hhHH---HHHHHHHhhcccCCCcEEEEEeCCc
Confidence 33221111 12479999998875 4 4444 4444555 9999999988874433
|
| >2pwy_A TRNA (adenine-N(1)-)-methyltransferase; mtase, adoMet, TRMI, tRNA-M1A58; HET: SAH; 1.70A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=99.54 E-value=6.2e-14 Score=113.34 Aligned_cols=134 Identities=14% Similarity=0.148 Sum_probs=94.8
Q ss_pred HHhhccCcccCCeEEEeCCCCcHHHHHHHHh-C-CCeEEEEeCChHHHHHHHHHhHHhc-CCCCCcceEeeecCCCCCCC
Q 026036 68 WLMHHREWIERRRCIELGSGTGALAIFLRKA-M-NLDITTSDYNDQEIEDNIAYNSTTN-GITPALPHIKHSWGDAFPIP 144 (244)
Q Consensus 68 ~~~~~~~~~~~~~VLdlG~G~G~~~~~~a~~-~-~~~v~~~D~~~~~l~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~ 144 (244)
++.......++.+|||+|||+|.++..+++. + +.+|+++|+++.++ +.++++...+ +. .++..+..+..+. ++.
T Consensus 87 ~~~~~~~~~~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~~D~~~~~~-~~a~~~~~~~~g~-~~v~~~~~d~~~~-~~~ 163 (258)
T 2pwy_A 87 AMVTLLDLAPGMRVLEAGTGSGGLTLFLARAVGEKGLVESYEARPHHL-AQAERNVRAFWQV-ENVRFHLGKLEEA-ELE 163 (258)
T ss_dssp HHHHHTTCCTTCEEEEECCTTSHHHHHHHHHHCTTSEEEEEESCHHHH-HHHHHHHHHHCCC-CCEEEEESCGGGC-CCC
T ss_pred HHHHHcCCCCCCEEEEECCCcCHHHHHHHHHhCCCCEEEEEeCCHHHH-HHHHHHHHHhcCC-CCEEEEECchhhc-CCC
Confidence 4444445668889999999999999999887 3 67999999999987 7888887665 52 3344444443322 344
Q ss_pred CCCccEEEEcccccCCcChHHHHHHHHHHHHhcCCCCceEeecccccCCCCCCCCCCCeEEEeeeeccCccchhhHHHHH
Q 026036 145 NPDWDLILASDILLYVKQYSNLIKSLSVLLKSYKPKDSQVGHLTKNEQGEGTEGLPWPAFLMSWRRRIGKEDETIFFTSC 224 (244)
Q Consensus 145 ~~~fD~I~~~~~l~~~~~~~~l~~~l~~~~~~lk~gG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 224 (244)
.++||+|+++. ... ...++++.+.|+|||++++..+.. .....+.+.+
T Consensus 164 ~~~~D~v~~~~-----~~~---~~~l~~~~~~L~~gG~l~~~~~~~------------------------~~~~~~~~~l 211 (258)
T 2pwy_A 164 EAAYDGVALDL-----MEP---WKVLEKAALALKPDRFLVAYLPNI------------------------TQVLELVRAA 211 (258)
T ss_dssp TTCEEEEEEES-----SCG---GGGHHHHHHHEEEEEEEEEEESCH------------------------HHHHHHHHHH
T ss_pred CCCcCEEEECC-----cCH---HHHHHHHHHhCCCCCEEEEEeCCH------------------------HHHHHHHHHH
Confidence 56899999832 122 277888999999999888762111 1135677788
Q ss_pred hhcCCeEEEecc
Q 026036 225 ENAGLEVKHLGS 236 (244)
Q Consensus 225 ~~~Gf~v~~~~~ 236 (244)
++.||+..++.+
T Consensus 212 ~~~gf~~~~~~~ 223 (258)
T 2pwy_A 212 EAHPFRLERVLE 223 (258)
T ss_dssp TTTTEEEEEEEE
T ss_pred HHCCCceEEEEE
Confidence 889998776654
|
| >1yb2_A Hypothetical protein TA0852; structural genomics, methyltransferase, thermoplasma acidoph midwest center for structural genomics, MCSG; 2.01A {Thermoplasma acidophilum} SCOP: c.66.1.13 | Back alignment and structure |
|---|
Probab=99.54 E-value=2.5e-14 Score=117.15 Aligned_cols=133 Identities=14% Similarity=0.175 Sum_probs=92.3
Q ss_pred HHhhccCcccCCeEEEeCCCCcHHHHHHHHh-C-CCeEEEEeCChHHHHHHHHHhHHhc-CCCCCcceEeeecCCCCCCC
Q 026036 68 WLMHHREWIERRRCIELGSGTGALAIFLRKA-M-NLDITTSDYNDQEIEDNIAYNSTTN-GITPALPHIKHSWGDAFPIP 144 (244)
Q Consensus 68 ~~~~~~~~~~~~~VLdlG~G~G~~~~~~a~~-~-~~~v~~~D~~~~~l~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~ 144 (244)
++.......++.+|||+|||+|.++..+++. . +.+|+++|+++.++ +.++++...+ +. .++..+..+..+ ...
T Consensus 101 ~~~~~~~~~~~~~VLD~G~G~G~~~~~la~~~~~~~~v~~vD~s~~~~-~~a~~~~~~~~g~-~~v~~~~~d~~~--~~~ 176 (275)
T 1yb2_A 101 YIIMRCGLRPGMDILEVGVGSGNMSSYILYALNGKGTLTVVERDEDNL-KKAMDNLSEFYDI-GNVRTSRSDIAD--FIS 176 (275)
T ss_dssp -----CCCCTTCEEEEECCTTSHHHHHHHHHHTTSSEEEEECSCHHHH-HHHHHHHHTTSCC-TTEEEECSCTTT--CCC
T ss_pred HHHHHcCCCCcCEEEEecCCCCHHHHHHHHHcCCCCEEEEEECCHHHH-HHHHHHHHhcCCC-CcEEEEECchhc--cCc
Confidence 4444455668889999999999999999887 3 67999999999987 8888888776 53 233444334333 233
Q ss_pred CCCccEEEEcccccCCcChHHHHHHHHHHHHhcCCCCceEeecccccCCCCCCCCCCCeEEEeeeeccCccchhhHHHHH
Q 026036 145 NPDWDLILASDILLYVKQYSNLIKSLSVLLKSYKPKDSQVGHLTKNEQGEGTEGLPWPAFLMSWRRRIGKEDETIFFTSC 224 (244)
Q Consensus 145 ~~~fD~I~~~~~l~~~~~~~~l~~~l~~~~~~lk~gG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 224 (244)
.++||+|++. + ... .+.++++.+.|||||++++.+... .....+.+.+
T Consensus 177 ~~~fD~Vi~~-~----~~~---~~~l~~~~~~LkpgG~l~i~~~~~------------------------~~~~~~~~~l 224 (275)
T 1yb2_A 177 DQMYDAVIAD-I----PDP---WNHVQKIASMMKPGSVATFYLPNF------------------------DQSEKTVLSL 224 (275)
T ss_dssp SCCEEEEEEC-C----SCG---GGSHHHHHHTEEEEEEEEEEESSH------------------------HHHHHHHHHS
T ss_pred CCCccEEEEc-C----cCH---HHHHHHHHHHcCCCCEEEEEeCCH------------------------HHHHHHHHHH
Confidence 4689999982 2 222 378889999999999988763211 1135677788
Q ss_pred hhcCCeEEEecc
Q 026036 225 ENAGLEVKHLGS 236 (244)
Q Consensus 225 ~~~Gf~v~~~~~ 236 (244)
++.||+++++.+
T Consensus 225 ~~~Gf~~~~~~~ 236 (275)
T 1yb2_A 225 SASGMHHLETVE 236 (275)
T ss_dssp GGGTEEEEEEEE
T ss_pred HHCCCeEEEEEE
Confidence 888998776543
|
| >3dr5_A Putative O-methyltransferase; Q8NRD3, CGL1119, PF01596, CGR117, NESG, structural genomics, PSI-2, protein structure initiative; 2.25A {Corynebacterium glutamicum} | Back alignment and structure |
|---|
Probab=99.54 E-value=1.5e-14 Score=114.83 Aligned_cols=122 Identities=11% Similarity=0.041 Sum_probs=86.6
Q ss_pred echHHHHHHHHhhccCcccCCeEEEeCCCCcHHHHHHHHhC--CCeEEEEeCChHHHHHHHHHhHHhcCCC-CCcceEee
Q 026036 59 WPGTFSFAEWLMHHREWIERRRCIELGSGTGALAIFLRKAM--NLDITTSDYNDQEIEDNIAYNSTTNGIT-PALPHIKH 135 (244)
Q Consensus 59 w~~~~~l~~~~~~~~~~~~~~~VLdlG~G~G~~~~~~a~~~--~~~v~~~D~~~~~l~~~~~~~~~~~~~~-~~~~~~~~ 135 (244)
-|....+...+.......++.+|||||||+|..++.+++.. +.+|+++|++++++ +.++++...+++. .++..+..
T Consensus 38 ~~~~~~~l~~l~~~~~~~~~~~vLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~-~~a~~~~~~~g~~~~~i~~~~g 116 (221)
T 3dr5_A 38 DEMTGQLLTTLAATTNGNGSTGAIAITPAAGLVGLYILNGLADNTTLTCIDPESEHQ-RQAKALFREAGYSPSRVRFLLS 116 (221)
T ss_dssp CHHHHHHHHHHHHHSCCTTCCEEEEESTTHHHHHHHHHHHSCTTSEEEEECSCHHHH-HHHHHHHHHTTCCGGGEEEECS
T ss_pred CHHHHHHHHHHHHhhCCCCCCCEEEEcCCchHHHHHHHHhCCCCCEEEEEECCHHHH-HHHHHHHHHcCCCcCcEEEEEc
Confidence 34555555555544443345599999999999999998865 67999999999987 8889998887774 34444433
Q ss_pred ecCCCCCC-CCCCccEEEEcccccCCcChHHHHHHHHHHHHhcCCCCceEeec
Q 026036 136 SWGDAFPI-PNPDWDLILASDILLYVKQYSNLIKSLSVLLKSYKPKDSQVGHL 187 (244)
Q Consensus 136 ~~~~~~~~-~~~~fD~I~~~~~l~~~~~~~~l~~~l~~~~~~lk~gG~~~~~~ 187 (244)
+..+.++. ..++||+|++.... ......++.+.++|||||.+++..
T Consensus 117 da~~~l~~~~~~~fD~V~~d~~~------~~~~~~l~~~~~~LkpGG~lv~dn 163 (221)
T 3dr5_A 117 RPLDVMSRLANDSYQLVFGQVSP------MDLKALVDAAWPLLRRGGALVLAD 163 (221)
T ss_dssp CHHHHGGGSCTTCEEEEEECCCT------TTHHHHHHHHHHHEEEEEEEEETT
T ss_pred CHHHHHHHhcCCCcCeEEEcCcH------HHHHHHHHHHHHHcCCCcEEEEeC
Confidence 22222222 25789999985432 234478899999999999888763
|
| >3ggd_A SAM-dependent methyltransferase; YP_325210.1, structural GEN joint center for structural genomics, JCSG; HET: SAH; 2.11A {Anabaena variabilis atcc 29413} | Back alignment and structure |
|---|
Probab=99.53 E-value=3.4e-14 Score=114.14 Aligned_cols=107 Identities=10% Similarity=-0.071 Sum_probs=77.9
Q ss_pred cccCCeEEEeCCCCcHHHHHHHHhCCCeEEEEeCChHHHHHHHHHhHHhcCCCCCcceEeeecCCCCC---CC-CCCccE
Q 026036 75 WIERRRCIELGSGTGALAIFLRKAMNLDITTSDYNDQEIEDNIAYNSTTNGITPALPHIKHSWGDAFP---IP-NPDWDL 150 (244)
Q Consensus 75 ~~~~~~VLdlG~G~G~~~~~~a~~~~~~v~~~D~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~-~~~fD~ 150 (244)
..++.+|||+|||+|..+..+++.+. +|+++|+|+.++ +.++++.... ++..+..+..+... +. ...||+
T Consensus 54 ~~~~~~vLD~GcG~G~~~~~la~~~~-~v~gvD~s~~~~-~~a~~~~~~~----~~~~~~~d~~~~~~~~~~~~~~~~d~ 127 (245)
T 3ggd_A 54 FNPELPLIDFACGNGTQTKFLSQFFP-RVIGLDVSKSAL-EIAAKENTAA----NISYRLLDGLVPEQAAQIHSEIGDAN 127 (245)
T ss_dssp SCTTSCEEEETCTTSHHHHHHHHHSS-CEEEEESCHHHH-HHHHHHSCCT----TEEEEECCTTCHHHHHHHHHHHCSCE
T ss_pred cCCCCeEEEEcCCCCHHHHHHHHhCC-CEEEEECCHHHH-HHHHHhCccc----CceEEECcccccccccccccccCccE
Confidence 45778999999999999999998755 999999999987 7776665221 23333333322100 00 124999
Q ss_pred EEEcccccCCcChHHHHHHHHHHHHhcCCCCceEeecc
Q 026036 151 ILASDILLYVKQYSNLIKSLSVLLKSYKPKDSQVGHLT 188 (244)
Q Consensus 151 I~~~~~l~~~~~~~~l~~~l~~~~~~lk~gG~~~~~~~ 188 (244)
|+++.++ ++....+..+.++++.+.|||||++++...
T Consensus 128 v~~~~~~-~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~ 164 (245)
T 3ggd_A 128 IYMRTGF-HHIPVEKRELLGQSLRILLGKQGAMYLIEL 164 (245)
T ss_dssp EEEESSS-TTSCGGGHHHHHHHHHHHHTTTCEEEEEEE
T ss_pred EEEcchh-hcCCHHHHHHHHHHHHHHcCCCCEEEEEeC
Confidence 9999998 555555777999999999999999887743
|
| >1wy7_A Hypothetical protein PH1948; seven-stranded beta sheet, methyltransferase fold, structura genomics, transferase; HET: SAH; 2.20A {Pyrococcus horikoshii} SCOP: c.66.1.32 | Back alignment and structure |
|---|
Probab=99.53 E-value=2.3e-13 Score=106.46 Aligned_cols=133 Identities=14% Similarity=0.025 Sum_probs=91.9
Q ss_pred cccCCeEEEeCCCCcHHHHHHHHhCCCeEEEEeCChHHHHHHHHHhHHhcCCCCCcceEeeecCCCCCCCCCCccEEEEc
Q 026036 75 WIERRRCIELGSGTGALAIFLRKAMNLDITTSDYNDQEIEDNIAYNSTTNGITPALPHIKHSWGDAFPIPNPDWDLILAS 154 (244)
Q Consensus 75 ~~~~~~VLdlG~G~G~~~~~~a~~~~~~v~~~D~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fD~I~~~ 154 (244)
..++.+|||+|||+|.++..+++.+..+|+++|+++.++ +.+++|...+++ ++..+..+.. .. +++||+|+++
T Consensus 47 ~~~~~~vlD~g~G~G~~~~~l~~~~~~~v~~vD~~~~~~-~~a~~~~~~~~~--~~~~~~~d~~---~~-~~~~D~v~~~ 119 (207)
T 1wy7_A 47 DIEGKVVADLGAGTGVLSYGALLLGAKEVICVEVDKEAV-DVLIENLGEFKG--KFKVFIGDVS---EF-NSRVDIVIMN 119 (207)
T ss_dssp SSTTCEEEEETCTTCHHHHHHHHTTCSEEEEEESCHHHH-HHHHHHTGGGTT--SEEEEESCGG---GC-CCCCSEEEEC
T ss_pred CCCcCEEEEeeCCCCHHHHHHHHcCCCEEEEEECCHHHH-HHHHHHHHHcCC--CEEEEECchH---Hc-CCCCCEEEEc
Confidence 447789999999999999999887556899999999987 888888877765 3333333332 22 2489999998
Q ss_pred ccccCCcChHHHHHHHHHHHHhcCCCCceEeecccccCCCCCCCCCCCeEEEeeeeccCccchhhHHHHHhhcCCeEEEe
Q 026036 155 DILLYVKQYSNLIKSLSVLLKSYKPKDSQVGHLTKNEQGEGTEGLPWPAFLMSWRRRIGKEDETIFFTSCENAGLEVKHL 234 (244)
Q Consensus 155 ~~l~~~~~~~~l~~~l~~~~~~lk~gG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gf~v~~~ 234 (244)
.++ +........+.++.+.+.+ |+ +++. +.... .+...+.+.+++.||+++.+
T Consensus 120 ~p~-~~~~~~~~~~~l~~~~~~l--~~-~~~~---------------------~~~~~--~~~~~~~~~l~~~g~~~~~~ 172 (207)
T 1wy7_A 120 PPF-GSQRKHADRPFLLKAFEIS--DV-VYSI---------------------HLAKP--EVRRFIEKFSWEHGFVVTHR 172 (207)
T ss_dssp CCC-SSSSTTTTHHHHHHHHHHC--SE-EEEE---------------------EECCH--HHHHHHHHHHHHTTEEEEEE
T ss_pred CCC-ccccCCchHHHHHHHHHhc--Cc-EEEE---------------------EeCCc--CCHHHHHHHHHHCCCeEEEE
Confidence 886 4443344457788888887 43 3332 10000 11345667788999999888
Q ss_pred ccEEEEE
Q 026036 235 GSRVYCI 241 (244)
Q Consensus 235 ~~~~~~~ 241 (244)
....+.+
T Consensus 173 ~~~~~~~ 179 (207)
T 1wy7_A 173 LTTKIEI 179 (207)
T ss_dssp EEEEEEE
T ss_pred EEEecCC
Confidence 7766553
|
| >3id6_C Fibrillarin-like rRNA/TRNA 2'-O-methyltransferase; C/D guide RNA, 2'-O-methylation, coiled-coil, methyltransfer binding, rRNA processing; HET: SAM; 2.60A {Sulfolobus solfataricus} SCOP: c.66.1.0 PDB: 3id5_B* 3pla_E* | Back alignment and structure |
|---|
Probab=99.53 E-value=2e-13 Score=108.74 Aligned_cols=147 Identities=9% Similarity=0.024 Sum_probs=86.9
Q ss_pred HHHHHHhhc---cCcccCCeEEEeCCCCcHHHHHHHHhC--CCeEEEEeCChHHHHHHHHHhHHhcCCCCCcceEeeecC
Q 026036 64 SFAEWLMHH---REWIERRRCIELGSGTGALAIFLRKAM--NLDITTSDYNDQEIEDNIAYNSTTNGITPALPHIKHSWG 138 (244)
Q Consensus 64 ~l~~~~~~~---~~~~~~~~VLdlG~G~G~~~~~~a~~~--~~~v~~~D~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 138 (244)
.++..+... ..+.+|.+|||+|||+|..+..++... ..+|+++|+++.|+....+ .+... .++..+..+..
T Consensus 60 kla~~ll~~l~~~~l~~g~~VLDlG~GtG~~t~~la~~v~~~G~V~avD~s~~~l~~l~~-~a~~r---~nv~~i~~Da~ 135 (232)
T 3id6_C 60 KLAGAILKGLKTNPIRKGTKVLYLGAASGTTISHVSDIIELNGKAYGVEFSPRVVRELLL-VAQRR---PNIFPLLADAR 135 (232)
T ss_dssp HHHHHHHTTCSCCSCCTTCEEEEETCTTSHHHHHHHHHHTTTSEEEEEECCHHHHHHHHH-HHHHC---TTEEEEECCTT
T ss_pred HHHHHHHhhhhhcCCCCCCEEEEEeecCCHHHHHHHHHhCCCCEEEEEECcHHHHHHHHH-Hhhhc---CCeEEEEcccc
Confidence 445555443 346789999999999999999998764 5689999999988633222 22221 12233333322
Q ss_pred CCC--CCCCCCccEEEEcccccCCcChHHHHHH-HHHHHHhcCCCCceEeecccccCCCCCCCCCCCeEEEeeeeccCcc
Q 026036 139 DAF--PIPNPDWDLILASDILLYVKQYSNLIKS-LSVLLKSYKPKDSQVGHLTKNEQGEGTEGLPWPAFLMSWRRRIGKE 215 (244)
Q Consensus 139 ~~~--~~~~~~fD~I~~~~~l~~~~~~~~l~~~-l~~~~~~lk~gG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 215 (244)
.+. ....++||+|++.-+. ++..+. ...+.+.|||||++++++....... . ....+
T Consensus 136 ~~~~~~~~~~~~D~I~~d~a~------~~~~~il~~~~~~~LkpGG~lvisik~~~~d~--------------t-~~~~e 194 (232)
T 3id6_C 136 FPQSYKSVVENVDVLYVDIAQ------PDQTDIAIYNAKFFLKVNGDMLLVIKARSIDV--------------T-KDPKE 194 (232)
T ss_dssp CGGGTTTTCCCEEEEEECCCC------TTHHHHHHHHHHHHEEEEEEEEEEEC----------------------CCSSS
T ss_pred cchhhhccccceEEEEecCCC------hhHHHHHHHHHHHhCCCCeEEEEEEccCCccc--------------C-CCHHH
Confidence 211 1224589999986432 222233 3455669999999998743221000 0 00111
Q ss_pred chhhHHHHHhhcCCeEEEec
Q 026036 216 DETIFFTSCENAGLEVKHLG 235 (244)
Q Consensus 216 ~~~~~~~~l~~~Gf~v~~~~ 235 (244)
....-.+.++++||++.+..
T Consensus 195 ~~~~~~~~L~~~gf~~~~~~ 214 (232)
T 3id6_C 195 IYKTEVEKLENSNFETIQII 214 (232)
T ss_dssp STTHHHHHHHHTTEEEEEEE
T ss_pred HHHHHHHHHHHCCCEEEEEe
Confidence 12445677888999988764
|
| >3b3j_A Histone-arginine methyltransferase CARM1; protein arginine methyltransferase 4, APO catalytic domain, regulator, mRNA processing; 2.55A {Rattus norvegicus} | Back alignment and structure |
|---|
Probab=99.53 E-value=1.8e-14 Score=126.62 Aligned_cols=120 Identities=14% Similarity=0.195 Sum_probs=91.1
Q ss_pred HHHHHHHHhhccCcccCCeEEEeCCCCcHHHHHHHHhCCCeEEEEeCChHHHHHHHHHhHHhcCCCCCcceEeeecCCCC
Q 026036 62 TFSFAEWLMHHREWIERRRCIELGSGTGALAIFLRKAMNLDITTSDYNDQEIEDNIAYNSTTNGITPALPHIKHSWGDAF 141 (244)
Q Consensus 62 ~~~l~~~~~~~~~~~~~~~VLdlG~G~G~~~~~~a~~~~~~v~~~D~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 141 (244)
+..+.+.+.......++.+|||||||+|.+++.+++.+..+|+++|+++ ++ +.+++++..+++..++..+..++.+.
T Consensus 143 t~~~~~~il~~l~~~~~~~VLDiGcGtG~la~~la~~~~~~V~gvD~s~-~l-~~A~~~~~~~gl~~~v~~~~~d~~~~- 219 (480)
T 3b3j_A 143 TGTYQRAILQNHTDFKDKIVLDVGCGSGILSFFAAQAGARKIYAVEAST-MA-QHAEVLVKSNNLTDRIVVIPGKVEEV- 219 (480)
T ss_dssp HHHHHHHHHHTGGGTTTCEEEEESCSTTHHHHHHHHTTCSEEEEEECHH-HH-HHHHHHHHHTTCTTTEEEEESCTTTC-
T ss_pred HHHHHHHHHHhhhhcCCCEEEEecCcccHHHHHHHHcCCCEEEEEEcHH-HH-HHHHHHHHHcCCCCcEEEEECchhhC-
Confidence 3444555665555567889999999999999999887667999999998 76 88888888888866666666555442
Q ss_pred CCCCCCccEEEEcccccCCcChHHHHHHHHHHHHhcCCCCceEee
Q 026036 142 PIPNPDWDLILASDILLYVKQYSNLIKSLSVLLKSYKPKDSQVGH 186 (244)
Q Consensus 142 ~~~~~~fD~I~~~~~l~~~~~~~~l~~~l~~~~~~lk~gG~~~~~ 186 (244)
+. .++||+|+++.++|+ ...+.....+..+.+.|||||.+++.
T Consensus 220 ~~-~~~fD~Ivs~~~~~~-~~~e~~~~~l~~~~~~LkpgG~li~~ 262 (480)
T 3b3j_A 220 SL-PEQVDIIISEPMGYM-LFNERMLESYLHAKKYLKPSGNMFPT 262 (480)
T ss_dssp CC-SSCEEEEECCCCHHH-HTCHHHHHHHHHGGGGEEEEEEEESC
T ss_pred cc-CCCeEEEEEeCchHh-cCcHHHHHHHHHHHHhcCCCCEEEEE
Confidence 22 358999999877643 33355667788889999999988864
|
| >3lbf_A Protein-L-isoaspartate O-methyltransferase; modified rossman-type fold, S-adenosyl-L- methionine; HET: SAH; 1.80A {Escherichia coli} | Back alignment and structure |
|---|
Probab=99.53 E-value=4.5e-14 Score=110.81 Aligned_cols=113 Identities=10% Similarity=0.059 Sum_probs=83.1
Q ss_pred HHHHHHhhccCcccCCeEEEeCCCCcHHHHHHHHhCCCeEEEEeCChHHHHHHHHHhHHhcCCCCCcceEeeecCCCCCC
Q 026036 64 SFAEWLMHHREWIERRRCIELGSGTGALAIFLRKAMNLDITTSDYNDQEIEDNIAYNSTTNGITPALPHIKHSWGDAFPI 143 (244)
Q Consensus 64 ~l~~~~~~~~~~~~~~~VLdlG~G~G~~~~~~a~~~~~~v~~~D~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 143 (244)
.+...+.......++.+|||+|||+|..+..+++. +.+|+++|+++.++ +.++++...++.+ ++..+..+..+. ..
T Consensus 64 ~~~~~~~~~l~~~~~~~vLdiG~G~G~~~~~la~~-~~~v~~vD~~~~~~-~~a~~~~~~~~~~-~v~~~~~d~~~~-~~ 139 (210)
T 3lbf_A 64 YMVARMTELLELTPQSRVLEIGTGSGYQTAILAHL-VQHVCSVERIKGLQ-WQARRRLKNLDLH-NVSTRHGDGWQG-WQ 139 (210)
T ss_dssp HHHHHHHHHTTCCTTCEEEEECCTTSHHHHHHHHH-SSEEEEEESCHHHH-HHHHHHHHHTTCC-SEEEEESCGGGC-CG
T ss_pred HHHHHHHHhcCCCCCCEEEEEcCCCCHHHHHHHHh-CCEEEEEecCHHHH-HHHHHHHHHcCCC-ceEEEECCcccC-Cc
Confidence 34444454555668899999999999999999888 78999999999987 8888888777663 334443333322 22
Q ss_pred CCCCccEEEEcccccCCcChHHHHHHHHHHHHhcCCCCceEeeccc
Q 026036 144 PNPDWDLILASDILLYVKQYSNLIKSLSVLLKSYKPKDSQVGHLTK 189 (244)
Q Consensus 144 ~~~~fD~I~~~~~l~~~~~~~~l~~~l~~~~~~lk~gG~~~~~~~~ 189 (244)
..++||+|+++.++.+. . ..+.+.|||||++++.+..
T Consensus 140 ~~~~~D~i~~~~~~~~~-~--------~~~~~~L~pgG~lv~~~~~ 176 (210)
T 3lbf_A 140 ARAPFDAIIVTAAPPEI-P--------TALMTQLDEGGILVLPVGE 176 (210)
T ss_dssp GGCCEEEEEESSBCSSC-C--------THHHHTEEEEEEEEEEECS
T ss_pred cCCCccEEEEccchhhh-h--------HHHHHhcccCcEEEEEEcC
Confidence 34689999999888332 2 1478999999999887554
|
| >2gs9_A Hypothetical protein TT1324; methyl transferase, structural genomics, NPPSFA, national PR protein structural and functional analyses; HET: SAH; 2.60A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=99.53 E-value=8.3e-14 Score=109.31 Aligned_cols=99 Identities=16% Similarity=0.225 Sum_probs=74.8
Q ss_pred cCCeEEEeCCCCcHHHHHHHHhCCC-eEEEEeCChHHHHHHHHHhHHhcCCCCCcceEeeecCCCCCCCCCCccEEEEcc
Q 026036 77 ERRRCIELGSGTGALAIFLRKAMNL-DITTSDYNDQEIEDNIAYNSTTNGITPALPHIKHSWGDAFPIPNPDWDLILASD 155 (244)
Q Consensus 77 ~~~~VLdlG~G~G~~~~~~a~~~~~-~v~~~D~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fD~I~~~~ 155 (244)
++.+|||+|||+|..+..+ +. +|+++|+++.++ +.++++. .. +..+..+. ..+++.+++||+|++++
T Consensus 36 ~~~~vLdiG~G~G~~~~~l----~~~~v~~vD~s~~~~-~~a~~~~--~~----~~~~~~d~-~~~~~~~~~fD~v~~~~ 103 (211)
T 2gs9_A 36 PGESLLEVGAGTGYWLRRL----PYPQKVGVEPSEAML-AVGRRRA--PE----ATWVRAWG-EALPFPGESFDVVLLFT 103 (211)
T ss_dssp CCSEEEEETCTTCHHHHHC----CCSEEEEECCCHHHH-HHHHHHC--TT----SEEECCCT-TSCCSCSSCEEEEEEES
T ss_pred CCCeEEEECCCCCHhHHhC----CCCeEEEEeCCHHHH-HHHHHhC--CC----cEEEEccc-ccCCCCCCcEEEEEEcC
Confidence 7789999999999988776 45 999999999987 6666654 11 23333333 23455567899999999
Q ss_pred cccCCcChHHHHHHHHHHHHhcCCCCceEeecccc
Q 026036 156 ILLYVKQYSNLIKSLSVLLKSYKPKDSQVGHLTKN 190 (244)
Q Consensus 156 ~l~~~~~~~~l~~~l~~~~~~lk~gG~~~~~~~~~ 190 (244)
++++.. +..+.++++.++|||||++++.++..
T Consensus 104 ~l~~~~---~~~~~l~~~~~~L~pgG~l~i~~~~~ 135 (211)
T 2gs9_A 104 TLEFVE---DVERVLLEARRVLRPGGALVVGVLEA 135 (211)
T ss_dssp CTTTCS---CHHHHHHHHHHHEEEEEEEEEEEECT
T ss_pred hhhhcC---CHHHHHHHHHHHcCCCCEEEEEecCC
Confidence 994432 45599999999999999999986544
|
| >3uwp_A Histone-lysine N-methyltransferase, H3 lysine-79; epigenetics, tubercidin, structu genomics, structural genomics consortium, SGC; HET: 5ID; 2.05A {Homo sapiens} PDB: 4eqz_A* 3sx0_A* 4er0_A* 4er7_A* 1nw3_A* 4er6_A* 4er5_A* 3qow_A* 3qox_A* 4ek9_A* 4ekg_A* 4eki_A* 4er3_A* 3sr4_A* | Back alignment and structure |
|---|
Probab=99.53 E-value=7.5e-14 Score=118.73 Aligned_cols=122 Identities=13% Similarity=0.155 Sum_probs=86.7
Q ss_pred eechHHHHHHHHhhccCcccCCeEEEeCCCCcHHHHHHHHhCCC-eEEEEeCChHHHHHHHHHhH-------HhcCCCCC
Q 026036 58 LWPGTFSFAEWLMHHREWIERRRCIELGSGTGALAIFLRKAMNL-DITTSDYNDQEIEDNIAYNS-------TTNGITPA 129 (244)
Q Consensus 58 ~w~~~~~l~~~~~~~~~~~~~~~VLdlG~G~G~~~~~~a~~~~~-~v~~~D~~~~~l~~~~~~~~-------~~~~~~~~ 129 (244)
+.+....+...+.......++.+|||||||+|.+++.++...++ +|+|+|+++.++ +.+++++ ..+++.
T Consensus 154 YGEt~~~~i~~il~~l~l~~gd~VLDLGCGtG~l~l~lA~~~g~~kVvGIDiS~~~l-elAr~n~e~frkr~~~~Gl~-- 230 (438)
T 3uwp_A 154 YGETSFDLVAQMIDEIKMTDDDLFVDLGSGVGQVVLQVAAATNCKHHYGVEKADIPA-KYAETMDREFRKWMKWYGKK-- 230 (438)
T ss_dssp GGGTHHHHHHHHHHHHCCCTTCEEEEESCTTSHHHHHHHHHCCCSEEEEEECCHHHH-HHHHHHHHHHHHHHHHHTBC--
T ss_pred cCCCCHHHHHHHHHhcCCCCCCEEEEeCCCCCHHHHHHHHHCCCCEEEEEeCCHHHH-HHHHHHHHHHHHHHHHhCCC--
Confidence 33445555555666666778999999999999999999877655 599999999876 6665543 333431
Q ss_pred cceEeeecCCCCCCC--C--CCccEEEEcccccCCcChHHHHHHHHHHHHhcCCCCceEee
Q 026036 130 LPHIKHSWGDAFPIP--N--PDWDLILASDILLYVKQYSNLIKSLSVLLKSYKPKDSQVGH 186 (244)
Q Consensus 130 ~~~~~~~~~~~~~~~--~--~~fD~I~~~~~l~~~~~~~~l~~~l~~~~~~lk~gG~~~~~ 186 (244)
...+.+..+|....+ + ..||+|+++.++ +. +++...|+++++.|||||++++.
T Consensus 231 ~~rVefi~GD~~~lp~~d~~~~aDVVf~Nn~~-F~---pdl~~aL~Ei~RvLKPGGrIVss 287 (438)
T 3uwp_A 231 HAEYTLERGDFLSEEWRERIANTSVIFVNNFA-FG---PEVDHQLKERFANMKEGGRIVSS 287 (438)
T ss_dssp CCEEEEEECCTTSHHHHHHHHTCSEEEECCTT-CC---HHHHHHHHHHHTTSCTTCEEEES
T ss_pred CCCeEEEECcccCCccccccCCccEEEEcccc-cC---chHHHHHHHHHHcCCCCcEEEEe
Confidence 123444455543321 1 369999998776 33 56668899999999999999887
|
| >4a6d_A Hydroxyindole O-methyltransferase; melatonin, circadian clock; HET: SAM; 2.40A {Homo sapiens} PDB: 4a6e_A* | Back alignment and structure |
|---|
Probab=99.52 E-value=1e-13 Score=117.49 Aligned_cols=157 Identities=16% Similarity=0.095 Sum_probs=102.6
Q ss_pred hhccCcccCCeEEEeCCCCcHHHHHHHHhC-CCeEEEEeCChHHHHHHHHHhHHhcCCCCCcceEeeecCCCCCCCCCCc
Q 026036 70 MHHREWIERRRCIELGSGTGALAIFLRKAM-NLDITTSDYNDQEIEDNIAYNSTTNGITPALPHIKHSWGDAFPIPNPDW 148 (244)
Q Consensus 70 ~~~~~~~~~~~VLdlG~G~G~~~~~~a~~~-~~~v~~~D~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f 148 (244)
..........+|+|||||+|..+..++++. ..+++..|. +.++ +.++++..... ..++..+ .+|....+.+.+
T Consensus 172 ~~~~~~~~~~~v~DvGgG~G~~~~~l~~~~p~~~~~~~dl-p~v~-~~a~~~~~~~~-~~rv~~~---~gD~~~~~~~~~ 245 (353)
T 4a6d_A 172 LTAFDLSVFPLMCDLGGGAGALAKECMSLYPGCKITVFDI-PEVV-WTAKQHFSFQE-EEQIDFQ---EGDFFKDPLPEA 245 (353)
T ss_dssp HHSSCGGGCSEEEEETCTTSHHHHHHHHHCSSCEEEEEEC-HHHH-HHHHHHSCC---CCSEEEE---ESCTTTSCCCCC
T ss_pred HHhcCcccCCeEEeeCCCCCHHHHHHHHhCCCceeEeccC-HHHH-HHHHHhhhhcc-cCceeee---cCccccCCCCCc
Confidence 333455567899999999999999999887 678888998 4555 67766654333 2344444 444443344568
Q ss_pred cEEEEcccccCCcChHHHHHHHHHHHHhcCCCCceEeecccccCCCCC-CCCC--CCeEEEeeeeccCccchhhHHHHHh
Q 026036 149 DLILASDILLYVKQYSNLIKSLSVLLKSYKPKDSQVGHLTKNEQGEGT-EGLP--WPAFLMSWRRRIGKEDETIFFTSCE 225 (244)
Q Consensus 149 D~I~~~~~l~~~~~~~~l~~~l~~~~~~lk~gG~~~~~~~~~~~~~~~-~~~~--~~~~~~~~~~~~~~~~~~~~~~~l~ 225 (244)
|+|++..+++++ +.++..+.|+++++.|+|||++++.....++.... .... +-.++.....+ ..+.++|.++++
T Consensus 246 D~~~~~~vlh~~-~d~~~~~iL~~~~~al~pgg~lli~e~~~~~~~~~~~~~~~~dl~ml~~~~g~--ert~~e~~~ll~ 322 (353)
T 4a6d_A 246 DLYILARVLHDW-ADGKCSHLLERIYHTCKPGGGILVIESLLDEDRRGPLLTQLYSLNMLVQTEGQ--ERTPTHYHMLLS 322 (353)
T ss_dssp SEEEEESSGGGS-CHHHHHHHHHHHHHHCCTTCEEEEEECCCCTTSCCCHHHHHHHHHHHHSSSCC--CCCHHHHHHHHH
T ss_pred eEEEeeeecccC-CHHHHHHHHHHHHhhCCCCCEEEEEEeeeCCCCCCCHHHHHHHHHHHHhCCCc--CCCHHHHHHHHH
Confidence 999999999544 45667789999999999999999985444322211 0000 00000001111 123579999999
Q ss_pred hcCCeEEEec
Q 026036 226 NAGLEVKHLG 235 (244)
Q Consensus 226 ~~Gf~v~~~~ 235 (244)
++||+.+++.
T Consensus 323 ~AGf~~v~v~ 332 (353)
T 4a6d_A 323 SAGFRDFQFK 332 (353)
T ss_dssp HHTCEEEEEE
T ss_pred HCCCceEEEE
Confidence 9999988875
|
| >3tfw_A Putative O-methyltransferase; PSI-biology, nysgrc, structural genomics, NEW YORK structura genomics research consortium; 1.88A {Klebsiella pneumoniae subsp} | Back alignment and structure |
|---|
Probab=99.52 E-value=3.9e-14 Score=114.34 Aligned_cols=105 Identities=16% Similarity=0.210 Sum_probs=80.0
Q ss_pred cccCCeEEEeCCCCcHHHHHHHHhC--CCeEEEEeCChHHHHHHHHHhHHhcCCCCCcceEeeecCCCCCCC--CCCccE
Q 026036 75 WIERRRCIELGSGTGALAIFLRKAM--NLDITTSDYNDQEIEDNIAYNSTTNGITPALPHIKHSWGDAFPIP--NPDWDL 150 (244)
Q Consensus 75 ~~~~~~VLdlG~G~G~~~~~~a~~~--~~~v~~~D~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~fD~ 150 (244)
..++.+|||||||+|..+..+++.. +.+|+++|+++.++ +.++++...+++..++..+..+..+.++.. .++||+
T Consensus 61 ~~~~~~VLdiG~G~G~~~~~la~~~~~~~~v~~vD~s~~~~-~~a~~~~~~~g~~~~v~~~~~d~~~~l~~~~~~~~fD~ 139 (248)
T 3tfw_A 61 LTQAKRILEIGTLGGYSTIWMARELPADGQLLTLEADAHHA-QVARENLQLAGVDQRVTLREGPALQSLESLGECPAFDL 139 (248)
T ss_dssp HHTCSEEEEECCTTSHHHHHHHTTSCTTCEEEEEECCHHHH-HHHHHHHHHTTCTTTEEEEESCHHHHHHTCCSCCCCSE
T ss_pred hcCCCEEEEecCCchHHHHHHHHhCCCCCEEEEEECCHHHH-HHHHHHHHHcCCCCcEEEEEcCHHHHHHhcCCCCCeEE
Confidence 3467899999999999999998875 57999999999987 888888888877655555544433222222 348999
Q ss_pred EEEcccccCCcChHHHHHHHHHHHHhcCCCCceEee
Q 026036 151 ILASDILLYVKQYSNLIKSLSVLLKSYKPKDSQVGH 186 (244)
Q Consensus 151 I~~~~~l~~~~~~~~l~~~l~~~~~~lk~gG~~~~~ 186 (244)
|++... .......++.+.++|||||.+++.
T Consensus 140 V~~d~~------~~~~~~~l~~~~~~LkpGG~lv~~ 169 (248)
T 3tfw_A 140 IFIDAD------KPNNPHYLRWALRYSRPGTLIIGD 169 (248)
T ss_dssp EEECSC------GGGHHHHHHHHHHTCCTTCEEEEE
T ss_pred EEECCc------hHHHHHHHHHHHHhcCCCeEEEEe
Confidence 998432 334457899999999999988776
|
| >2ipx_A RRNA 2'-O-methyltransferase fibrillarin; FBL, structural genomics, structural genomics consortium, SGC; HET: MTA; 1.82A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.52 E-value=9.9e-14 Score=110.75 Aligned_cols=107 Identities=7% Similarity=0.021 Sum_probs=74.1
Q ss_pred ccCcccCCeEEEeCCCCcHHHHHHHHhC--CCeEEEEeCChHHHHHHHHHhHHhcCCCCCcceEeeecCCC--CCCCCCC
Q 026036 72 HREWIERRRCIELGSGTGALAIFLRKAM--NLDITTSDYNDQEIEDNIAYNSTTNGITPALPHIKHSWGDA--FPIPNPD 147 (244)
Q Consensus 72 ~~~~~~~~~VLdlG~G~G~~~~~~a~~~--~~~v~~~D~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~ 147 (244)
.....++.+|||+|||+|.++..+++.. ..+|+++|+++.++ +.+.+++..+ .++..+..+..+. ++...++
T Consensus 72 ~~~~~~~~~vLDlG~G~G~~~~~la~~~g~~~~v~gvD~s~~~i-~~~~~~a~~~---~~v~~~~~d~~~~~~~~~~~~~ 147 (233)
T 2ipx_A 72 QIHIKPGAKVLYLGAASGTTVSHVSDIVGPDGLVYAVEFSHRSG-RDLINLAKKR---TNIIPVIEDARHPHKYRMLIAM 147 (233)
T ss_dssp CCCCCTTCEEEEECCTTSHHHHHHHHHHCTTCEEEEECCCHHHH-HHHHHHHHHC---TTEEEECSCTTCGGGGGGGCCC
T ss_pred eecCCCCCEEEEEcccCCHHHHHHHHHhCCCcEEEEEECCHHHH-HHHHHHhhcc---CCeEEEEcccCChhhhcccCCc
Confidence 3445678899999999999999998874 47999999999876 4444555443 1233333333321 2234568
Q ss_pred ccEEEEcccccCCcChHHHHHHHHHHHHhcCCCCceEeec
Q 026036 148 WDLILASDILLYVKQYSNLIKSLSVLLKSYKPKDSQVGHL 187 (244)
Q Consensus 148 fD~I~~~~~l~~~~~~~~l~~~l~~~~~~lk~gG~~~~~~ 187 (244)
||+|++..+ ........+.++.+.|||||++++.+
T Consensus 148 ~D~V~~~~~-----~~~~~~~~~~~~~~~LkpgG~l~i~~ 182 (233)
T 2ipx_A 148 VDVIFADVA-----QPDQTRIVALNAHTFLRNGGHFVISI 182 (233)
T ss_dssp EEEEEECCC-----CTTHHHHHHHHHHHHEEEEEEEEEEE
T ss_pred EEEEEEcCC-----CccHHHHHHHHHHHHcCCCeEEEEEE
Confidence 999998544 12233356788999999999998863
|
| >1o54_A SAM-dependent O-methyltransferase; TM0748, structural genomi PSI, protein structure initiative, joint center for structu genomics; 1.65A {Thermotoga maritima} SCOP: c.66.1.13 | Back alignment and structure |
|---|
Probab=99.52 E-value=4.8e-14 Score=115.58 Aligned_cols=128 Identities=12% Similarity=0.057 Sum_probs=91.7
Q ss_pred cCcccCCeEEEeCCCCcHHHHHHHHh-C-CCeEEEEeCChHHHHHHHHHhHHhcCCCCCcceEeeecCCCCCCCCCCccE
Q 026036 73 REWIERRRCIELGSGTGALAIFLRKA-M-NLDITTSDYNDQEIEDNIAYNSTTNGITPALPHIKHSWGDAFPIPNPDWDL 150 (244)
Q Consensus 73 ~~~~~~~~VLdlG~G~G~~~~~~a~~-~-~~~v~~~D~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fD~ 150 (244)
....++.+|||+|||+|.++..+++. + +.+|+++|+++.++ +.+++|...+++..++..+..+..+. ...++||+
T Consensus 108 ~~~~~~~~VLDiG~G~G~~~~~la~~~~~~~~v~~vD~s~~~~-~~a~~~~~~~~~~~~v~~~~~d~~~~--~~~~~~D~ 184 (277)
T 1o54_A 108 LDVKEGDRIIDTGVGSGAMCAVLARAVGSSGKVFAYEKREEFA-KLAESNLTKWGLIERVTIKVRDISEG--FDEKDVDA 184 (277)
T ss_dssp TTCCTTCEEEEECCTTSHHHHHHHHHTTTTCEEEEECCCHHHH-HHHHHHHHHTTCGGGEEEECCCGGGC--CSCCSEEE
T ss_pred hCCCCCCEEEEECCcCCHHHHHHHHHhCCCcEEEEEECCHHHH-HHHHHHHHHcCCCCCEEEEECCHHHc--ccCCccCE
Confidence 35567889999999999999999987 3 67999999999987 88888887766533344443333332 33457999
Q ss_pred EEEcccccCCcChHHHHHHHHHHHHhcCCCCceEeecccccCCCCCCCCCCCeEEEeeeeccCccchhhHHHHHhhcCCe
Q 026036 151 ILASDILLYVKQYSNLIKSLSVLLKSYKPKDSQVGHLTKNEQGEGTEGLPWPAFLMSWRRRIGKEDETIFFTSCENAGLE 230 (244)
Q Consensus 151 I~~~~~l~~~~~~~~l~~~l~~~~~~lk~gG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gf~ 230 (244)
|+++.. .. ...++++.+.|+|||++++..... .....+.+.+++.||.
T Consensus 185 V~~~~~-----~~---~~~l~~~~~~L~pgG~l~~~~~~~------------------------~~~~~~~~~l~~~gf~ 232 (277)
T 1o54_A 185 LFLDVP-----DP---WNYIDKCWEALKGGGRFATVCPTT------------------------NQVQETLKKLQELPFI 232 (277)
T ss_dssp EEECCS-----CG---GGTHHHHHHHEEEEEEEEEEESSH------------------------HHHHHHHHHHHHSSEE
T ss_pred EEECCc-----CH---HHHHHHHHHHcCCCCEEEEEeCCH------------------------HHHHHHHHHHHHCCCc
Confidence 998422 12 277888999999999888762111 1135667778889998
Q ss_pred EEEec
Q 026036 231 VKHLG 235 (244)
Q Consensus 231 v~~~~ 235 (244)
..++.
T Consensus 233 ~~~~~ 237 (277)
T 1o54_A 233 RIEVW 237 (277)
T ss_dssp EEEEE
T ss_pred eeEEE
Confidence 66554
|
| >3dxy_A TRNA (guanine-N(7)-)-methyltransferase; rossmann fold methyltransferase, tRNA modification, S-adenosyl-L-methionine, TR processing; HET: SAM; 1.50A {Escherichia coli} PDB: 3dxx_A* 3dxz_A* | Back alignment and structure |
|---|
Probab=99.51 E-value=2e-14 Score=113.85 Aligned_cols=109 Identities=14% Similarity=0.120 Sum_probs=77.3
Q ss_pred cCCeEEEeCCCCcHHHHHHHHhC-CCeEEEEeCChHHHHHHHHHhHHhcCCCCCcceEeeecCCCCC--CCCCCccEEEE
Q 026036 77 ERRRCIELGSGTGALAIFLRKAM-NLDITTSDYNDQEIEDNIAYNSTTNGITPALPHIKHSWGDAFP--IPNPDWDLILA 153 (244)
Q Consensus 77 ~~~~VLdlG~G~G~~~~~~a~~~-~~~v~~~D~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~fD~I~~ 153 (244)
++.+|||||||+|.++..+|+.. ..+|+|+|+++.++ +.+++++..+++++ +..+..+..+.++ +.+++||.|++
T Consensus 34 ~~~~vLDiGcG~G~~~~~lA~~~p~~~v~giD~s~~~l-~~a~~~~~~~~l~n-v~~~~~Da~~~l~~~~~~~~~d~v~~ 111 (218)
T 3dxy_A 34 EAPVTLEIGFGMGASLVAMAKDRPEQDFLGIEVHSPGV-GACLASAHEEGLSN-LRVMCHDAVEVLHKMIPDNSLRMVQL 111 (218)
T ss_dssp CCCEEEEESCTTCHHHHHHHHHCTTSEEEEECSCHHHH-HHHHHHHHHTTCSS-EEEECSCHHHHHHHHSCTTCEEEEEE
T ss_pred CCCeEEEEeeeChHHHHHHHHHCCCCeEEEEEecHHHH-HHHHHHHHHhCCCc-EEEEECCHHHHHHHHcCCCChheEEE
Confidence 56799999999999999999876 57899999999997 78888887777632 3333222222122 45679999999
Q ss_pred cccccCCcChHH-----HHHHHHHHHHhcCCCCceEeec
Q 026036 154 SDILLYVKQYSN-----LIKSLSVLLKSYKPKDSQVGHL 187 (244)
Q Consensus 154 ~~~l~~~~~~~~-----l~~~l~~~~~~lk~gG~~~~~~ 187 (244)
+.+..++..... ....++++.++|||||.+++.+
T Consensus 112 ~~~~p~~~~~~~~rr~~~~~~l~~~~r~LkpGG~l~i~t 150 (218)
T 3dxy_A 112 FFPDPWHKARHNKRRIVQVPFAELVKSKLQLGGVFHMAT 150 (218)
T ss_dssp ESCCCCCSGGGGGGSSCSHHHHHHHHHHEEEEEEEEEEE
T ss_pred eCCCCccchhhhhhhhhhHHHHHHHHHHcCCCcEEEEEe
Confidence 833311111110 0158899999999999998873
|
| >1nt2_A Fibrillarin-like PRE-rRNA processing protein; adeMet, binding motif, RNA binding protein; HET: SAM; 2.90A {Archaeoglobus fulgidus} SCOP: c.66.1.3 | Back alignment and structure |
|---|
Probab=99.51 E-value=8.3e-14 Score=109.64 Aligned_cols=103 Identities=15% Similarity=0.069 Sum_probs=69.3
Q ss_pred CcccCCeEEEeCCCCcHHHHHHHHhC-CCeEEEEeCChHHHHHHHHHhHHhcCCCCCcceEeeecCCC---CCCCCCCcc
Q 026036 74 EWIERRRCIELGSGTGALAIFLRKAM-NLDITTSDYNDQEIEDNIAYNSTTNGITPALPHIKHSWGDA---FPIPNPDWD 149 (244)
Q Consensus 74 ~~~~~~~VLdlG~G~G~~~~~~a~~~-~~~v~~~D~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~fD 149 (244)
...++.+|||+|||+|..+..++... ..+|+|+|+|+.|+ +.+.+.+... .++..+..+..+. .+. .++||
T Consensus 54 ~~~~g~~VLDlGcGtG~~~~~la~~~~~~~V~gvD~s~~~l-~~~~~~a~~~---~~v~~~~~d~~~~~~~~~~-~~~fD 128 (210)
T 1nt2_A 54 KLRGDERVLYLGAASGTTVSHLADIVDEGIIYAVEYSAKPF-EKLLELVRER---NNIIPLLFDASKPWKYSGI-VEKVD 128 (210)
T ss_dssp CCCSSCEEEEETCTTSHHHHHHHHHTTTSEEEEECCCHHHH-HHHHHHHHHC---SSEEEECSCTTCGGGTTTT-CCCEE
T ss_pred CCCCCCEEEEECCcCCHHHHHHHHHcCCCEEEEEECCHHHH-HHHHHHHhcC---CCeEEEEcCCCCchhhccc-cccee
Confidence 34578899999999999999998875 46899999999876 3333333221 1122222222221 122 36899
Q ss_pred EEEEcccccCCcChHHHHHHHHHHHHhcCCCCceEee
Q 026036 150 LILASDILLYVKQYSNLIKSLSVLLKSYKPKDSQVGH 186 (244)
Q Consensus 150 ~I~~~~~l~~~~~~~~l~~~l~~~~~~lk~gG~~~~~ 186 (244)
+|+++ +. . ..+...+++++++.|||||++++.
T Consensus 129 ~V~~~-~~-~---~~~~~~~l~~~~r~LkpgG~l~i~ 160 (210)
T 1nt2_A 129 LIYQD-IA-Q---KNQIEILKANAEFFLKEKGEVVIM 160 (210)
T ss_dssp EEEEC-CC-S---TTHHHHHHHHHHHHEEEEEEEEEE
T ss_pred EEEEe-cc-C---hhHHHHHHHHHHHHhCCCCEEEEE
Confidence 99986 22 2 223335689999999999999887
|
| >2avn_A Ubiquinone/menaquinone biosynthesis methyltransfe related protein; ubiquinone/menaquinone biosynthesis methyltransferase-relate protein; HET: SAI; 2.35A {Thermotoga maritima} SCOP: c.66.1.41 | Back alignment and structure |
|---|
Probab=99.50 E-value=5.8e-14 Score=113.97 Aligned_cols=111 Identities=17% Similarity=0.326 Sum_probs=80.8
Q ss_pred HHHHHhhccCcccCCeEEEeCCCCcHHHHHHHHhCCCeEEEEeCChHHHHHHHHHhHHhcCCCCCcceEeeecCCCCCCC
Q 026036 65 FAEWLMHHREWIERRRCIELGSGTGALAIFLRKAMNLDITTSDYNDQEIEDNIAYNSTTNGITPALPHIKHSWGDAFPIP 144 (244)
Q Consensus 65 l~~~~~~~~~~~~~~~VLdlG~G~G~~~~~~a~~~~~~v~~~D~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 144 (244)
+.+++..... ++.+|||+|||+|.++..+++. +.+|+++|+|+.++ +.++++... ..+..+. ..+++.
T Consensus 44 ~~~~l~~~~~--~~~~vLDiGcG~G~~~~~l~~~-~~~v~gvD~s~~~l-~~a~~~~~~-------~~~~~d~-~~~~~~ 111 (260)
T 2avn_A 44 IGSFLEEYLK--NPCRVLDLGGGTGKWSLFLQER-GFEVVLVDPSKEML-EVAREKGVK-------NVVEAKA-EDLPFP 111 (260)
T ss_dssp HHHHHHHHCC--SCCEEEEETCTTCHHHHHHHTT-TCEEEEEESCHHHH-HHHHHHTCS-------CEEECCT-TSCCSC
T ss_pred HHHHHHHhcC--CCCeEEEeCCCcCHHHHHHHHc-CCeEEEEeCCHHHH-HHHHhhcCC-------CEEECcH-HHCCCC
Confidence 3444444433 6789999999999999999876 67999999999987 666655331 1233333 234555
Q ss_pred CCCccEEEEcccccCCcChHHHHHHHHHHHHhcCCCCceEeeccc
Q 026036 145 NPDWDLILASDILLYVKQYSNLIKSLSVLLKSYKPKDSQVGHLTK 189 (244)
Q Consensus 145 ~~~fD~I~~~~~l~~~~~~~~l~~~l~~~~~~lk~gG~~~~~~~~ 189 (244)
+++||+|++.+++++... +....++++.++|||||++++.++.
T Consensus 112 ~~~fD~v~~~~~~~~~~~--~~~~~l~~~~~~LkpgG~l~~~~~~ 154 (260)
T 2avn_A 112 SGAFEAVLALGDVLSYVE--NKDKAFSEIRRVLVPDGLLIATVDN 154 (260)
T ss_dssp TTCEEEEEECSSHHHHCS--CHHHHHHHHHHHEEEEEEEEEEEEB
T ss_pred CCCEEEEEEcchhhhccc--cHHHHHHHHHHHcCCCeEEEEEeCC
Confidence 678999999887644322 2569999999999999999987544
|
| >2zfu_A Nucleomethylin, cerebral protein 1; nucleolar protein, SAM-binding protein, protein structure, N phosphoprotein, nuclear protein; HET: SAH; 2.00A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.50 E-value=1.4e-13 Score=108.31 Aligned_cols=112 Identities=14% Similarity=0.122 Sum_probs=83.2
Q ss_pred ccCCeEEEeCCCCcHHHHHHHHhCCCeEEEEeCChHHHHHHHHHhHHhcCCCCCcceEeeecCCCCCCCCCCccEEEEcc
Q 026036 76 IERRRCIELGSGTGALAIFLRKAMNLDITTSDYNDQEIEDNIAYNSTTNGITPALPHIKHSWGDAFPIPNPDWDLILASD 155 (244)
Q Consensus 76 ~~~~~VLdlG~G~G~~~~~~a~~~~~~v~~~D~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fD~I~~~~ 155 (244)
.++.+|||+|||+|.++..+ +.+|+++|+++. . +..+..+..+ ++..+++||+|+++.
T Consensus 66 ~~~~~vLDiG~G~G~~~~~l----~~~v~~~D~s~~-------------~----~~~~~~d~~~-~~~~~~~fD~v~~~~ 123 (215)
T 2zfu_A 66 PASLVVADFGCGDCRLASSI----RNPVHCFDLASL-------------D----PRVTVCDMAQ-VPLEDESVDVAVFCL 123 (215)
T ss_dssp CTTSCEEEETCTTCHHHHHC----CSCEEEEESSCS-------------S----TTEEESCTTS-CSCCTTCEEEEEEES
T ss_pred CCCCeEEEECCcCCHHHHHh----hccEEEEeCCCC-------------C----ceEEEecccc-CCCCCCCEeEEEEeh
Confidence 46789999999999988766 478999999986 1 1233333322 455567899999999
Q ss_pred cccCCcChHHHHHHHHHHHHhcCCCCceEeecccccCCCCCCCCCCCeEEEeeeeccCccchhhHHHHHhhcCCeEEEec
Q 026036 156 ILLYVKQYSNLIKSLSVLLKSYKPKDSQVGHLTKNEQGEGTEGLPWPAFLMSWRRRIGKEDETIFFTSCENAGLEVKHLG 235 (244)
Q Consensus 156 ~l~~~~~~~~l~~~l~~~~~~lk~gG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gf~v~~~~ 235 (244)
++ ++ .+....++++.++|+|||++++..... +.. +...+.++++++||+++...
T Consensus 124 ~l-~~---~~~~~~l~~~~~~L~~gG~l~i~~~~~--------------------~~~--~~~~~~~~l~~~Gf~~~~~~ 177 (215)
T 2zfu_A 124 SL-MG---TNIRDFLEEANRVLKPGGLLKVAEVSS--------------------RFE--DVRTFLRAVTKLGFKIVSKD 177 (215)
T ss_dssp CC-CS---SCHHHHHHHHHHHEEEEEEEEEEECGG--------------------GCS--CHHHHHHHHHHTTEEEEEEE
T ss_pred hc-cc---cCHHHHHHHHHHhCCCCeEEEEEEcCC--------------------CCC--CHHHHHHHHHHCCCEEEEEe
Confidence 98 43 345589999999999999988863221 111 35789999999999988764
|
| >1u2z_A Histone-lysine N-methyltransferase, H3 lysine-79 specific; histone methyltransferase, nucleosome; HET: SAH; 2.20A {Saccharomyces cerevisiae} SCOP: c.66.1.31 | Back alignment and structure |
|---|
Probab=99.50 E-value=2.7e-13 Score=117.05 Aligned_cols=113 Identities=17% Similarity=0.198 Sum_probs=81.4
Q ss_pred HHHHhhccCcccCCeEEEeCCCCcHHHHHHHHhC-CCeEEEEeCChHHHHHHH-------HHhHHhcCCC-CCcceEeee
Q 026036 66 AEWLMHHREWIERRRCIELGSGTGALAIFLRKAM-NLDITTSDYNDQEIEDNI-------AYNSTTNGIT-PALPHIKHS 136 (244)
Q Consensus 66 ~~~~~~~~~~~~~~~VLdlG~G~G~~~~~~a~~~-~~~v~~~D~~~~~l~~~~-------~~~~~~~~~~-~~~~~~~~~ 136 (244)
+..+.......++.+|||||||+|.+++.+++.. ..+|+|+|+++.++ +.+ +.++...++. .++ .+.
T Consensus 231 v~~ml~~l~l~~g~~VLDLGCGsG~la~~LA~~~g~~~V~GVDis~~~l-~~A~~Ml~~ar~~~~~~Gl~~~nV---~~i 306 (433)
T 1u2z_A 231 LSDVYQQCQLKKGDTFMDLGSGVGNCVVQAALECGCALSFGCEIMDDAS-DLTILQYEELKKRCKLYGMRLNNV---EFS 306 (433)
T ss_dssp HHHHHHHTTCCTTCEEEEESCTTSHHHHHHHHHHCCSEEEEEECCHHHH-HHHHHHHHHHHHHHHHTTBCCCCE---EEE
T ss_pred HHHHHHhcCCCCCCEEEEeCCCcCHHHHHHHHHCCCCEEEEEeCCHHHH-HHHHHhHHHHHHHHHHcCCCCCce---EEE
Confidence 3344444556688999999999999999999864 45899999999876 666 7777766632 233 333
Q ss_pred cCCCCC----C--CCCCccEEEEcccccCCcChHHHHHHHHHHHHhcCCCCceEee
Q 026036 137 WGDAFP----I--PNPDWDLILASDILLYVKQYSNLIKSLSVLLKSYKPKDSQVGH 186 (244)
Q Consensus 137 ~~~~~~----~--~~~~fD~I~~~~~l~~~~~~~~l~~~l~~~~~~lk~gG~~~~~ 186 (244)
.++... + ..++||+|+++.++ +. +++...++++.+.|||||++++.
T Consensus 307 ~gD~~~~~~~~~~~~~~FDvIvvn~~l-~~---~d~~~~L~el~r~LKpGG~lVi~ 358 (433)
T 1u2z_A 307 LKKSFVDNNRVAELIPQCDVILVNNFL-FD---EDLNKKVEKILQTAKVGCKIISL 358 (433)
T ss_dssp ESSCSTTCHHHHHHGGGCSEEEECCTT-CC---HHHHHHHHHHHTTCCTTCEEEES
T ss_pred EcCccccccccccccCCCCEEEEeCcc-cc---ccHHHHHHHHHHhCCCCeEEEEe
Confidence 322221 1 13579999998776 32 45668899999999999998887
|
| >2gpy_A O-methyltransferase; structural genomics, PSI, protein structure initiative, NEW research center for structural genomics, nysgxrc; HET: MSE; 1.90A {Bacillus halodurans} | Back alignment and structure |
|---|
Probab=99.50 E-value=3.9e-14 Score=113.09 Aligned_cols=106 Identities=11% Similarity=0.145 Sum_probs=80.7
Q ss_pred CcccCCeEEEeCCCCcHHHHHHHHhC-CCeEEEEeCChHHHHHHHHHhHHhcCCCCCcceEeeecCCCCCCC--CCCccE
Q 026036 74 EWIERRRCIELGSGTGALAIFLRKAM-NLDITTSDYNDQEIEDNIAYNSTTNGITPALPHIKHSWGDAFPIP--NPDWDL 150 (244)
Q Consensus 74 ~~~~~~~VLdlG~G~G~~~~~~a~~~-~~~v~~~D~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~fD~ 150 (244)
...++.+|||+|||+|..+..+++.. +.+|+++|+++.++ +.++++...++...++..+..+..+.++.. .++||+
T Consensus 51 ~~~~~~~vLdiG~G~G~~~~~la~~~~~~~v~~vD~~~~~~-~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~fD~ 129 (233)
T 2gpy_A 51 KMAAPARILEIGTAIGYSAIRMAQALPEATIVSIERDERRY-EEAHKHVKALGLESRIELLFGDALQLGEKLELYPLFDV 129 (233)
T ss_dssp HHHCCSEEEEECCTTSHHHHHHHHHCTTCEEEEECCCHHHH-HHHHHHHHHTTCTTTEEEECSCGGGSHHHHTTSCCEEE
T ss_pred hccCCCEEEEecCCCcHHHHHHHHHCCCCEEEEEECCHHHH-HHHHHHHHHcCCCCcEEEEECCHHHHHHhcccCCCccE
Confidence 34467899999999999999998876 68999999999987 888888887776444444443333322222 468999
Q ss_pred EEEcccccCCcChHHHHHHHHHHHHhcCCCCceEee
Q 026036 151 ILASDILLYVKQYSNLIKSLSVLLKSYKPKDSQVGH 186 (244)
Q Consensus 151 I~~~~~l~~~~~~~~l~~~l~~~~~~lk~gG~~~~~ 186 (244)
|++..+. . .....++.+.+.|+|||++++.
T Consensus 130 I~~~~~~-~-----~~~~~l~~~~~~L~pgG~lv~~ 159 (233)
T 2gpy_A 130 LFIDAAK-G-----QYRRFFDMYSPMVRPGGLILSD 159 (233)
T ss_dssp EEEEGGG-S-----CHHHHHHHHGGGEEEEEEEEEE
T ss_pred EEECCCH-H-----HHHHHHHHHHHHcCCCeEEEEE
Confidence 9997664 1 3448889999999999998886
|
| >3mq2_A 16S rRNA methyltransferase; methyltranferase, ribosomal, antibiotic resistance, aminoglycoside, S-adenosyl-L-methionine; HET: SAH; 1.69A {Streptomyces SP} | Back alignment and structure |
|---|
Probab=99.49 E-value=1.7e-13 Score=108.20 Aligned_cols=150 Identities=12% Similarity=0.047 Sum_probs=88.2
Q ss_pred cccCCeEEEeCCCCcHHHHHHHHhC-CCeEEEEeCChHHHHHHHH---HhHHhcCCCCCcceEeeecCCCCCCCCCCccE
Q 026036 75 WIERRRCIELGSGTGALAIFLRKAM-NLDITTSDYNDQEIEDNIA---YNSTTNGITPALPHIKHSWGDAFPIPNPDWDL 150 (244)
Q Consensus 75 ~~~~~~VLdlG~G~G~~~~~~a~~~-~~~v~~~D~~~~~l~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fD~ 150 (244)
..++.+|||+|||+|.++..+++.. +.+|+++|+|+.|+...++ ++....+. .++..+..+..+ +++..+. |.
T Consensus 25 ~~~~~~vLDiGcG~G~~~~~la~~~p~~~v~gvD~s~~~l~~~~~~a~~~~~~~~~-~~v~~~~~d~~~-l~~~~~~-d~ 101 (218)
T 3mq2_A 25 SQYDDVVLDVGTGDGKHPYKVARQNPSRLVVALDADKSRMEKISAKAAAKPAKGGL-PNLLYLWATAER-LPPLSGV-GE 101 (218)
T ss_dssp TTSSEEEEEESCTTCHHHHHHHHHCTTEEEEEEESCGGGGHHHHHHHTSCGGGTCC-TTEEEEECCSTT-CCSCCCE-EE
T ss_pred ccCCCEEEEecCCCCHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHhhhhcCC-CceEEEecchhh-CCCCCCC-CE
Confidence 3467899999999999999999886 6899999999998732222 22223333 133444444333 4454445 77
Q ss_pred EEEcccccCCc---ChHHHHHHHHHHHHhcCCCCceEeecccccCCCCC-CCCCCCeEEEeeeeccCccchhhHHHHHhh
Q 026036 151 ILASDILLYVK---QYSNLIKSLSVLLKSYKPKDSQVGHLTKNEQGEGT-EGLPWPAFLMSWRRRIGKEDETIFFTSCEN 226 (244)
Q Consensus 151 I~~~~~l~~~~---~~~~l~~~l~~~~~~lk~gG~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 226 (244)
|...... ... ..++....++++.++|||||++++........... .....+. ..... ..+.+.+.+++
T Consensus 102 v~~~~~~-~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~~----~~~~~---~~~~l~~~l~~ 173 (218)
T 3mq2_A 102 LHVLMPW-GSLLRGVLGSSPEMLRGMAAVCRPGASFLVALNLHAWRPSVPEVGEHPE----PTPDS---ADEWLAPRYAE 173 (218)
T ss_dssp EEEESCC-HHHHHHHHTSSSHHHHHHHHTEEEEEEEEEEEEGGGBTTBCGGGTTCCC----CCHHH---HHHHHHHHHHH
T ss_pred EEEEccc-hhhhhhhhccHHHHHHHHHHHcCCCcEEEEEeccccccccccccccCCc----cchHH---HHHHHHHHHHH
Confidence 7633221 100 11122588999999999999998863322111100 0000000 00111 12447778999
Q ss_pred cCCeEEEec
Q 026036 227 AGLEVKHLG 235 (244)
Q Consensus 227 ~Gf~v~~~~ 235 (244)
+||+++.+.
T Consensus 174 aGf~i~~~~ 182 (218)
T 3mq2_A 174 AGWKLADCR 182 (218)
T ss_dssp TTEEEEEEE
T ss_pred cCCCceeee
Confidence 999998764
|
| >3gdh_A Trimethylguanosine synthase homolog; M7G, CAP, dimethyltransferase, usnRNA, snoRNA, telomerase, cytoplasm, methyltransferase, nucleus; HET: MGP SAH; 2.00A {Homo sapiens} PDB: 3egi_A* | Back alignment and structure |
|---|
Probab=99.49 E-value=3.8e-15 Score=119.47 Aligned_cols=103 Identities=13% Similarity=0.077 Sum_probs=78.0
Q ss_pred cCCeEEEeCCCCcHHHHHHHHhCCCeEEEEeCChHHHHHHHHHhHHhcCCCCCcceEeeecCCCCCCCCCCccEEEEccc
Q 026036 77 ERRRCIELGSGTGALAIFLRKAMNLDITTSDYNDQEIEDNIAYNSTTNGITPALPHIKHSWGDAFPIPNPDWDLILASDI 156 (244)
Q Consensus 77 ~~~~VLdlG~G~G~~~~~~a~~~~~~v~~~D~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fD~I~~~~~ 156 (244)
++.+|||+|||+|..++.++.. +.+|+++|+++.++ +.+++|+..+++..++..+..+..+.. ..++||+|+++.+
T Consensus 78 ~~~~vLD~gcG~G~~~~~la~~-~~~v~~vD~s~~~~-~~a~~~~~~~~~~~~~~~~~~d~~~~~--~~~~~D~v~~~~~ 153 (241)
T 3gdh_A 78 KCDVVVDAFCGVGGNTIQFALT-GMRVIAIDIDPVKI-ALARNNAEVYGIADKIEFICGDFLLLA--SFLKADVVFLSPP 153 (241)
T ss_dssp CCSEEEETTCTTSHHHHHHHHT-TCEEEEEESCHHHH-HHHHHHHHHTTCGGGEEEEESCHHHHG--GGCCCSEEEECCC
T ss_pred CCCEEEECccccCHHHHHHHHc-CCEEEEEECCHHHH-HHHHHHHHHcCCCcCeEEEECChHHhc--ccCCCCEEEECCC
Confidence 6889999999999999999987 58999999999997 888888888776434444444332221 3468999999888
Q ss_pred ccCCcChHHHHHHHHHHHHhcCCCCceEee
Q 026036 157 LLYVKQYSNLIKSLSVLLKSYKPKDSQVGH 186 (244)
Q Consensus 157 l~~~~~~~~l~~~l~~~~~~lk~gG~~~~~ 186 (244)
+ ++.... ...+.++.++|+|||.+++.
T Consensus 154 ~-~~~~~~--~~~~~~~~~~L~pgG~~i~~ 180 (241)
T 3gdh_A 154 W-GGPDYA--TAETFDIRTMMSPDGFEIFR 180 (241)
T ss_dssp C-SSGGGG--GSSSBCTTTSCSSCHHHHHH
T ss_pred c-CCcchh--hhHHHHHHhhcCCcceeHHH
Confidence 7 443322 24667788999999986654
|
| >2b78_A Hypothetical protein SMU.776; structure genomics, methyltransferase, caries, structural genomics, unknown function; 2.00A {Streptococcus mutans} SCOP: b.122.1.9 c.66.1.51 PDB: 3ldf_A* | Back alignment and structure |
|---|
Probab=99.48 E-value=1.4e-13 Score=117.95 Aligned_cols=110 Identities=12% Similarity=0.037 Sum_probs=81.2
Q ss_pred ccCCeEEEeCCCCcHHHHHHHHhCCCeEEEEeCChHHHHHHHHHhHHhcCCCC-CcceEeeecCCCCCC---CCCCccEE
Q 026036 76 IERRRCIELGSGTGALAIFLRKAMNLDITTSDYNDQEIEDNIAYNSTTNGITP-ALPHIKHSWGDAFPI---PNPDWDLI 151 (244)
Q Consensus 76 ~~~~~VLdlG~G~G~~~~~~a~~~~~~v~~~D~~~~~l~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~---~~~~fD~I 151 (244)
.++.+|||+|||+|.+++.++..+..+|+++|+|+.++ +.+++|+..|++.. ++..+..+..+.++. ...+||+|
T Consensus 211 ~~~~~VLDl~cGtG~~sl~la~~ga~~V~~vD~s~~al-~~A~~N~~~n~~~~~~v~~~~~D~~~~l~~~~~~~~~fD~I 289 (385)
T 2b78_A 211 AAGKTVLNLFSYTAAFSVAAAMGGAMATTSVDLAKRSR-ALSLAHFEANHLDMANHQLVVMDVFDYFKYARRHHLTYDII 289 (385)
T ss_dssp TBTCEEEEETCTTTHHHHHHHHTTBSEEEEEESCTTHH-HHHHHHHHHTTCCCTTEEEEESCHHHHHHHHHHTTCCEEEE
T ss_pred cCCCeEEEEeeccCHHHHHHHHCCCCEEEEEECCHHHH-HHHHHHHHHcCCCccceEEEECCHHHHHHHHHHhCCCccEE
Confidence 47789999999999999999986566999999999998 89999999998854 455554433221211 13479999
Q ss_pred EEcccccC------CcChHHHHHHHHHHHHhcCCCCceEee
Q 026036 152 LASDILLY------VKQYSNLIKSLSVLLKSYKPKDSQVGH 186 (244)
Q Consensus 152 ~~~~~l~~------~~~~~~l~~~l~~~~~~lk~gG~~~~~ 186 (244)
++..+.+. ........+.++.+.+.|+|||.+++.
T Consensus 290 i~DPP~~~~~~~~~~~~~~~~~~ll~~~~~~L~pgG~l~~~ 330 (385)
T 2b78_A 290 IIDPPSFARNKKEVFSVSKDYHKLIRQGLEILSENGLIIAS 330 (385)
T ss_dssp EECCCCC-----CCCCHHHHHHHHHHHHHHTEEEEEEEEEE
T ss_pred EECCCCCCCChhhHHHHHHHHHHHHHHHHHhcCCCcEEEEE
Confidence 99776531 112234446778889999999988776
|
| >2yxe_A Protein-L-isoaspartate O-methyltransferase; rossman-type fold, alpha/beta/alpha sandwich structure, STRU genomics, NPPSFA; 2.00A {Methanocaldococcus jannaschii} | Back alignment and structure |
|---|
Probab=99.48 E-value=1.8e-13 Score=107.71 Aligned_cols=113 Identities=11% Similarity=0.078 Sum_probs=80.3
Q ss_pred HHHHHhhccCcccCCeEEEeCCCCcHHHHHHHHhCC--CeEEEEeCChHHHHHHHHHhHHhcCCCCCcceEeeecCCCCC
Q 026036 65 FAEWLMHHREWIERRRCIELGSGTGALAIFLRKAMN--LDITTSDYNDQEIEDNIAYNSTTNGITPALPHIKHSWGDAFP 142 (244)
Q Consensus 65 l~~~~~~~~~~~~~~~VLdlG~G~G~~~~~~a~~~~--~~v~~~D~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 142 (244)
+...+.......++.+|||+|||+|.++..+++..+ .+|+++|+++.++ +.++++....+.. .+..+..+..+..+
T Consensus 65 ~~~~~~~~~~~~~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~vD~~~~~~-~~a~~~~~~~~~~-~v~~~~~d~~~~~~ 142 (215)
T 2yxe_A 65 MVGMMCELLDLKPGMKVLEIGTGCGYHAAVTAEIVGEDGLVVSIERIPELA-EKAERTLRKLGYD-NVIVIVGDGTLGYE 142 (215)
T ss_dssp HHHHHHHHTTCCTTCEEEEECCTTSHHHHHHHHHHCTTSEEEEEESCHHHH-HHHHHHHHHHTCT-TEEEEESCGGGCCG
T ss_pred HHHHHHHhhCCCCCCEEEEECCCccHHHHHHHHHhCCCCEEEEEeCCHHHH-HHHHHHHHHcCCC-CeEEEECCcccCCC
Confidence 334444444566888999999999999999988764 7999999999987 7787777665552 23333333322211
Q ss_pred CCCCCccEEEEcccccCCcChHHHHHHHHHHHHhcCCCCceEeeccc
Q 026036 143 IPNPDWDLILASDILLYVKQYSNLIKSLSVLLKSYKPKDSQVGHLTK 189 (244)
Q Consensus 143 ~~~~~fD~I~~~~~l~~~~~~~~l~~~l~~~~~~lk~gG~~~~~~~~ 189 (244)
..++||+|+++.++. +.. +++.+.|||||++++.+..
T Consensus 143 -~~~~fD~v~~~~~~~-~~~--------~~~~~~L~pgG~lv~~~~~ 179 (215)
T 2yxe_A 143 -PLAPYDRIYTTAAGP-KIP--------EPLIRQLKDGGKLLMPVGR 179 (215)
T ss_dssp -GGCCEEEEEESSBBS-SCC--------HHHHHTEEEEEEEEEEESS
T ss_pred -CCCCeeEEEECCchH-HHH--------HHHHHHcCCCcEEEEEECC
Confidence 245799999999983 322 3688999999999887543
|
| >3duw_A OMT, O-methyltransferase, putative; alternating of alpha and beta with complex SAH; HET: SAH; 1.20A {Bacillus cereus} PDB: 3dul_A* | Back alignment and structure |
|---|
Probab=99.48 E-value=6.7e-14 Score=110.89 Aligned_cols=105 Identities=16% Similarity=0.158 Sum_probs=78.5
Q ss_pred cccCCeEEEeCCCCcHHHHHHHHhC--CCeEEEEeCChHHHHHHHHHhHHhcCCCCCcceEeeecCCCCCC----CCCCc
Q 026036 75 WIERRRCIELGSGTGALAIFLRKAM--NLDITTSDYNDQEIEDNIAYNSTTNGITPALPHIKHSWGDAFPI----PNPDW 148 (244)
Q Consensus 75 ~~~~~~VLdlG~G~G~~~~~~a~~~--~~~v~~~D~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~f 148 (244)
..++.+|||||||+|..+..+++.. +.+|+++|+++.++ +.++++....++..++..+..+..+.++. ..++|
T Consensus 56 ~~~~~~vLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~-~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~f 134 (223)
T 3duw_A 56 IQGARNILEIGTLGGYSTIWLARGLSSGGRVVTLEASEKHA-DIARSNIERANLNDRVEVRTGLALDSLQQIENEKYEPF 134 (223)
T ss_dssp HHTCSEEEEECCTTSHHHHHHHTTCCSSCEEEEEESCHHHH-HHHHHHHHHTTCTTTEEEEESCHHHHHHHHHHTTCCCC
T ss_pred hhCCCEEEEecCCccHHHHHHHHhCCCCCEEEEEECCHHHH-HHHHHHHHHcCCCCcEEEEEcCHHHHHHHHHhcCCCCc
Confidence 3467899999999999999998875 57999999999987 88888888777755555554433221111 11579
Q ss_pred cEEEEcccccCCcChHHHHHHHHHHHHhcCCCCceEee
Q 026036 149 DLILASDILLYVKQYSNLIKSLSVLLKSYKPKDSQVGH 186 (244)
Q Consensus 149 D~I~~~~~l~~~~~~~~l~~~l~~~~~~lk~gG~~~~~ 186 (244)
|+|++... .+.....++.+.+.|+|||.+++.
T Consensus 135 D~v~~d~~------~~~~~~~l~~~~~~L~pgG~lv~~ 166 (223)
T 3duw_A 135 DFIFIDAD------KQNNPAYFEWALKLSRPGTVIIGD 166 (223)
T ss_dssp SEEEECSC------GGGHHHHHHHHHHTCCTTCEEEEE
T ss_pred CEEEEcCC------cHHHHHHHHHHHHhcCCCcEEEEe
Confidence 99998544 234448899999999999977765
|
| >3v97_A Ribosomal RNA large subunit methyltransferase L; YCBY, RNA methyltransferase, ribosome RNA, SAH, RLML; HET: SAH OSU; 2.20A {Escherichia coli} PDB: 3v8v_A* | Back alignment and structure |
|---|
Probab=99.47 E-value=1e-13 Score=127.01 Aligned_cols=109 Identities=17% Similarity=0.099 Sum_probs=83.8
Q ss_pred cCCeEEEeCCCCcHHHHHHHHhCCCeEEEEeCChHHHHHHHHHhHHhcCCC-CCcceEeeecCCCCCCCCCCccEEEEcc
Q 026036 77 ERRRCIELGSGTGALAIFLRKAMNLDITTSDYNDQEIEDNIAYNSTTNGIT-PALPHIKHSWGDAFPIPNPDWDLILASD 155 (244)
Q Consensus 77 ~~~~VLdlG~G~G~~~~~~a~~~~~~v~~~D~~~~~l~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~fD~I~~~~ 155 (244)
+|.+|||+|||+|.+++.++..+..+|+++|+|+.++ +.+++|+..|++. .++..+..+..+.++...++||+|++..
T Consensus 539 ~g~~VLDlg~GtG~~sl~aa~~ga~~V~aVD~s~~al-~~a~~N~~~ngl~~~~v~~i~~D~~~~l~~~~~~fD~Ii~DP 617 (703)
T 3v97_A 539 KGKDFLNLFSYTGSATVHAGLGGARSTTTVDMSRTYL-EWAERNLRLNGLTGRAHRLIQADCLAWLREANEQFDLIFIDP 617 (703)
T ss_dssp TTCEEEEESCTTCHHHHHHHHTTCSEEEEEESCHHHH-HHHHHHHHHTTCCSTTEEEEESCHHHHHHHCCCCEEEEEECC
T ss_pred CCCcEEEeeechhHHHHHHHHCCCCEEEEEeCCHHHH-HHHHHHHHHcCCCccceEEEecCHHHHHHhcCCCccEEEECC
Confidence 6889999999999999999887666799999999998 8999999999885 3455554443322223346899999977
Q ss_pred cccCC--------cChHHHHHHHHHHHHhcCCCCceEee
Q 026036 156 ILLYV--------KQYSNLIKSLSVLLKSYKPKDSQVGH 186 (244)
Q Consensus 156 ~l~~~--------~~~~~l~~~l~~~~~~lk~gG~~~~~ 186 (244)
+.|.. .......+.++.+.++|+|||.++++
T Consensus 618 P~f~~~~~~~~~~~~~~~~~~ll~~a~~~LkpgG~L~~s 656 (703)
T 3v97_A 618 PTFSNSKRMEDAFDVQRDHLALMKDLKRLLRAGGTIMFS 656 (703)
T ss_dssp CSBC-------CCBHHHHHHHHHHHHHHHEEEEEEEEEE
T ss_pred ccccCCccchhHHHHHHHHHHHHHHHHHhcCCCcEEEEE
Confidence 65421 22345667889999999999988866
|
| >1ne2_A Hypothetical protein TA1320; structural genomics, conserved hypothetical protein, PSI, protein structure initiative; 1.75A {Thermoplasma acidophilum} SCOP: c.66.1.32 | Back alignment and structure |
|---|
Probab=99.47 E-value=3e-13 Score=105.32 Aligned_cols=125 Identities=13% Similarity=0.047 Sum_probs=82.2
Q ss_pred cccCCeEEEeCCCCcHHHHHHHHhCCCeEEEEeCChHHHHHHHHHhHHhcCCCCCcceEeeecCCCCCCCCCCccEEEEc
Q 026036 75 WIERRRCIELGSGTGALAIFLRKAMNLDITTSDYNDQEIEDNIAYNSTTNGITPALPHIKHSWGDAFPIPNPDWDLILAS 154 (244)
Q Consensus 75 ~~~~~~VLdlG~G~G~~~~~~a~~~~~~v~~~D~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fD~I~~~ 154 (244)
..++.+|||+|||+|.++..++..+..+|+++|+++.++ +.+++|.. ++..+..+..+ . .++||+|+++
T Consensus 49 ~~~~~~vlD~gcG~G~~~~~l~~~~~~~v~~vD~~~~~~-~~a~~~~~------~~~~~~~d~~~---~-~~~~D~v~~~ 117 (200)
T 1ne2_A 49 NIGGRSVIDAGTGNGILACGSYLLGAESVTAFDIDPDAI-ETAKRNCG------GVNFMVADVSE---I-SGKYDTWIMN 117 (200)
T ss_dssp SSBTSEEEEETCTTCHHHHHHHHTTBSEEEEEESCHHHH-HHHHHHCT------TSEEEECCGGG---C-CCCEEEEEEC
T ss_pred CCCCCEEEEEeCCccHHHHHHHHcCCCEEEEEECCHHHH-HHHHHhcC------CCEEEECcHHH---C-CCCeeEEEEC
Confidence 347789999999999999999887555799999999987 77777754 22334333322 2 2689999999
Q ss_pred ccccCCcChHHHHHHHHHHHHhcCCCCceEeecccccCCCCCCCCCCCeEEEeeeeccCccchhhHHHHHhhcCCeEEEe
Q 026036 155 DILLYVKQYSNLIKSLSVLLKSYKPKDSQVGHLTKNEQGEGTEGLPWPAFLMSWRRRIGKEDETIFFTSCENAGLEVKHL 234 (244)
Q Consensus 155 ~~l~~~~~~~~l~~~l~~~~~~lk~gG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gf~v~~~ 234 (244)
.++ ++.......+.++++.+.+ |+ ++++ +.+ .+...+.+.++..| +++.+
T Consensus 118 ~p~-~~~~~~~~~~~l~~~~~~~--g~-~~~~---------------------~~~----~~~~~~~~~~~~~g-~~~~~ 167 (200)
T 1ne2_A 118 PPF-GSVVKHSDRAFIDKAFETS--MW-IYSI---------------------GNA----KARDFLRREFSARG-DVFRE 167 (200)
T ss_dssp CCC--------CHHHHHHHHHHE--EE-EEEE---------------------EEG----GGHHHHHHHHHHHE-EEEEE
T ss_pred CCc-hhccCchhHHHHHHHHHhc--Cc-EEEE---------------------EcC----chHHHHHHHHHHCC-CEEEE
Confidence 887 4433333347788888887 33 3332 111 11345667788888 87777
Q ss_pred ccEEEE
Q 026036 235 GSRVYC 240 (244)
Q Consensus 235 ~~~~~~ 240 (244)
....+.
T Consensus 168 ~~~~~~ 173 (200)
T 1ne2_A 168 EKVYIT 173 (200)
T ss_dssp EEEEEE
T ss_pred EEEecC
Confidence 665554
|
| >1vbf_A 231AA long hypothetical protein-L-isoaspartate O- methyltransferase; trimeric coiled coil assembly; 2.80A {Sulfolobus tokodaii} SCOP: c.66.1.7 | Back alignment and structure |
|---|
Probab=99.47 E-value=2.2e-13 Score=108.42 Aligned_cols=111 Identities=7% Similarity=0.106 Sum_probs=79.9
Q ss_pred HHHHHHhhccCcccCCeEEEeCCCCcHHHHHHHHhCCCeEEEEeCChHHHHHHHHHhHHhcCCCCCcceEeeecCCCCCC
Q 026036 64 SFAEWLMHHREWIERRRCIELGSGTGALAIFLRKAMNLDITTSDYNDQEIEDNIAYNSTTNGITPALPHIKHSWGDAFPI 143 (244)
Q Consensus 64 ~l~~~~~~~~~~~~~~~VLdlG~G~G~~~~~~a~~~~~~v~~~D~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 143 (244)
.+.+.+.......++.+|||+|||+|.++..++..+ .+|+++|+++.++ +.++++...++ ++..+..+..+..+
T Consensus 57 ~~~~~~~~~~~~~~~~~vLdiG~G~G~~~~~l~~~~-~~v~~vD~~~~~~-~~a~~~~~~~~---~v~~~~~d~~~~~~- 130 (231)
T 1vbf_A 57 NLGIFMLDELDLHKGQKVLEIGTGIGYYTALIAEIV-DKVVSVEINEKMY-NYASKLLSYYN---NIKLILGDGTLGYE- 130 (231)
T ss_dssp HHHHHHHHHTTCCTTCEEEEECCTTSHHHHHHHHHS-SEEEEEESCHHHH-HHHHHHHTTCS---SEEEEESCGGGCCG-
T ss_pred HHHHHHHHhcCCCCCCEEEEEcCCCCHHHHHHHHHc-CEEEEEeCCHHHH-HHHHHHHhhcC---CeEEEECCcccccc-
Confidence 334445444556678899999999999999998875 8999999999987 77777765543 33344433333222
Q ss_pred CCCCccEEEEcccccCCcChHHHHHHHHHHHHhcCCCCceEeeccc
Q 026036 144 PNPDWDLILASDILLYVKQYSNLIKSLSVLLKSYKPKDSQVGHLTK 189 (244)
Q Consensus 144 ~~~~fD~I~~~~~l~~~~~~~~l~~~l~~~~~~lk~gG~~~~~~~~ 189 (244)
..++||+|++..++++ .. .++.+.|+|||++++.+..
T Consensus 131 ~~~~fD~v~~~~~~~~-~~--------~~~~~~L~pgG~l~~~~~~ 167 (231)
T 1vbf_A 131 EEKPYDRVVVWATAPT-LL--------CKPYEQLKEGGIMILPIGV 167 (231)
T ss_dssp GGCCEEEEEESSBBSS-CC--------HHHHHTEEEEEEEEEEECS
T ss_pred cCCCccEEEECCcHHH-HH--------HHHHHHcCCCcEEEEEEcC
Confidence 2468999999999833 22 2578999999999888543
|
| >3tr6_A O-methyltransferase; cellular processes; HET: SAH; 2.70A {Coxiella burnetii} SCOP: c.66.1.0 | Back alignment and structure |
|---|
Probab=99.47 E-value=3.8e-14 Score=112.38 Aligned_cols=105 Identities=16% Similarity=0.112 Sum_probs=79.1
Q ss_pred cccCCeEEEeCCCCcHHHHHHHHhC--CCeEEEEeCChHHHHHHHHHhHHhcCCCCCcceEeeecCCCCCCC-----CCC
Q 026036 75 WIERRRCIELGSGTGALAIFLRKAM--NLDITTSDYNDQEIEDNIAYNSTTNGITPALPHIKHSWGDAFPIP-----NPD 147 (244)
Q Consensus 75 ~~~~~~VLdlG~G~G~~~~~~a~~~--~~~v~~~D~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~ 147 (244)
..++.+|||+|||+|..++.++... +.+|+++|+++.++ +.++++...+++..++..+..+..+.++.. .++
T Consensus 62 ~~~~~~vLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~-~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~~ 140 (225)
T 3tr6_A 62 LMQAKKVIDIGTFTGYSAIAMGLALPKDGTLITCDVDEKST-ALAKEYWEKAGLSDKIGLRLSPAKDTLAELIHAGQAWQ 140 (225)
T ss_dssp HHTCSEEEEECCTTSHHHHHHHTTCCTTCEEEEEESCHHHH-HHHHHHHHHTTCTTTEEEEESCHHHHHHHHHTTTCTTC
T ss_pred hhCCCEEEEeCCcchHHHHHHHHhCCCCCEEEEEeCCHHHH-HHHHHHHHHCCCCCceEEEeCCHHHHHHHhhhccCCCC
Confidence 3467899999999999999998864 67999999999987 888888888777555555544332221111 168
Q ss_pred ccEEEEcccccCCcChHHHHHHHHHHHHhcCCCCceEee
Q 026036 148 WDLILASDILLYVKQYSNLIKSLSVLLKSYKPKDSQVGH 186 (244)
Q Consensus 148 fD~I~~~~~l~~~~~~~~l~~~l~~~~~~lk~gG~~~~~ 186 (244)
||+|++... .......++.+.+.|||||.+++.
T Consensus 141 fD~v~~~~~------~~~~~~~l~~~~~~L~pgG~lv~~ 173 (225)
T 3tr6_A 141 YDLIYIDAD------KANTDLYYEESLKLLREGGLIAVD 173 (225)
T ss_dssp EEEEEECSC------GGGHHHHHHHHHHHEEEEEEEEEE
T ss_pred ccEEEECCC------HHHHHHHHHHHHHhcCCCcEEEEe
Confidence 999997443 234558899999999999998876
|
| >3tma_A Methyltransferase; thump domain; 2.05A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=99.46 E-value=5.2e-13 Score=113.23 Aligned_cols=122 Identities=15% Similarity=0.124 Sum_probs=90.5
Q ss_pred hHHHHHHHHhhccCcccCCeEEEeCCCCcHHHHHHHHhC--CCeEEEEeCChHHHHHHHHHhHHhcCCCCCcceEeeecC
Q 026036 61 GTFSFAEWLMHHREWIERRRCIELGSGTGALAIFLRKAM--NLDITTSDYNDQEIEDNIAYNSTTNGITPALPHIKHSWG 138 (244)
Q Consensus 61 ~~~~l~~~~~~~~~~~~~~~VLdlG~G~G~~~~~~a~~~--~~~v~~~D~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 138 (244)
-...++..+.......++.+|||+|||+|.+++.++... ..+|+|+|+++.++ +.++.|+..+++. .+..+..+..
T Consensus 187 l~~~la~~l~~~~~~~~~~~vLD~gcGsG~~~ie~a~~~~~~~~v~g~Di~~~~i-~~a~~n~~~~g~~-~i~~~~~D~~ 264 (354)
T 3tma_A 187 LTPVLAQALLRLADARPGMRVLDPFTGSGTIALEAASTLGPTSPVYAGDLDEKRL-GLAREAALASGLS-WIRFLRADAR 264 (354)
T ss_dssp CCHHHHHHHHHHTTCCTTCCEEESSCTTSHHHHHHHHHHCTTSCEEEEESCHHHH-HHHHHHHHHTTCT-TCEEEECCGG
T ss_pred cCHHHHHHHHHHhCCCCCCEEEeCCCCcCHHHHHHHHhhCCCceEEEEECCHHHH-HHHHHHHHHcCCC-ceEEEeCChh
Confidence 345677777666666788899999999999999998864 47899999999997 8999999988874 4444444433
Q ss_pred CCCCCCCCCccEEEEcccccCCcCh--HH----HHHHHHHHHHhcCCCCceEee
Q 026036 139 DAFPIPNPDWDLILASDILLYVKQY--SN----LIKSLSVLLKSYKPKDSQVGH 186 (244)
Q Consensus 139 ~~~~~~~~~fD~I~~~~~l~~~~~~--~~----l~~~l~~~~~~lk~gG~~~~~ 186 (244)
+ ++...+.||+|+++.++ ..... .. ....++.+.+.|||||++++.
T Consensus 265 ~-~~~~~~~~D~Ii~npPy-g~r~~~~~~~~~~~~~~~~~~~~~LkpgG~l~i~ 316 (354)
T 3tma_A 265 H-LPRFFPEVDRILANPPH-GLRLGRKEGLFHLYWDFLRGALALLPPGGRVALL 316 (354)
T ss_dssp G-GGGTCCCCSEEEECCCS-CC----CHHHHHHHHHHHHHHHHTSCTTCEEEEE
T ss_pred h-CccccCCCCEEEECCCC-cCccCCcccHHHHHHHHHHHHHHhcCCCcEEEEE
Confidence 2 22334568999998775 33211 11 257888999999999998876
|
| >3reo_A (ISO)eugenol O-methyltransferase; directed evolution, saturation mutagenesis, regioselectivity transferase; HET: SAH EUG; 1.90A {Clarkia breweri} PDB: 3tky_A* 1kyz_A* 1kyw_A* | Back alignment and structure |
|---|
Probab=99.46 E-value=1.7e-13 Score=116.84 Aligned_cols=148 Identities=14% Similarity=0.126 Sum_probs=94.6
Q ss_pred cccCCeEEEeCCCCcHHHHHHHHhC-CCeEEEEeCChHHHHHHHHHhHHhcCCCCCcceEeeecCCCCCCCCCCccEEEE
Q 026036 75 WIERRRCIELGSGTGALAIFLRKAM-NLDITTSDYNDQEIEDNIAYNSTTNGITPALPHIKHSWGDAFPIPNPDWDLILA 153 (244)
Q Consensus 75 ~~~~~~VLdlG~G~G~~~~~~a~~~-~~~v~~~D~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fD~I~~ 153 (244)
..++.+|||||||+|..+..+++.. ..+++++|+ +.++ +.++.+ .++..+..+..++ .+. . |+|++
T Consensus 201 ~~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~-~~a~~~-------~~v~~~~~d~~~~--~p~-~-D~v~~ 267 (368)
T 3reo_A 201 FEGLTTIVDVGGGTGAVASMIVAKYPSINAINFDL-PHVI-QDAPAF-------SGVEHLGGDMFDG--VPK-G-DAIFI 267 (368)
T ss_dssp TTTCSEEEEETCTTSHHHHHHHHHCTTCEEEEEEC-HHHH-TTCCCC-------TTEEEEECCTTTC--CCC-C-SEEEE
T ss_pred ccCCCEEEEeCCCcCHHHHHHHHhCCCCEEEEEeh-HHHH-Hhhhhc-------CCCEEEecCCCCC--CCC-C-CEEEE
Confidence 4456899999999999999998876 678999999 7665 433211 2334444444332 332 3 99999
Q ss_pred cccccCCcChHHHHHHHHHHHHhcCCCCceEeecccccCCCCCCCC-----CCCeEEEeeeeccCccchhhHHHHHhhcC
Q 026036 154 SDILLYVKQYSNLIKSLSVLLKSYKPKDSQVGHLTKNEQGEGTEGL-----PWPAFLMSWRRRIGKEDETIFFTSCENAG 228 (244)
Q Consensus 154 ~~~l~~~~~~~~l~~~l~~~~~~lk~gG~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~l~~~G 228 (244)
..++ |+...++..+.++++++.|||||++++.............. .....+..........+.+++.++++++|
T Consensus 268 ~~vl-h~~~~~~~~~~l~~~~~~L~pgG~l~i~e~~~~~~~~~~~~~~~~~~~d~~~~~~~~~g~~rt~~e~~~ll~~AG 346 (368)
T 3reo_A 268 KWIC-HDWSDEHCLKLLKNCYAALPDHGKVIVAEYILPPSPDPSIATKVVIHTDALMLAYNPGGKERTEKEFQALAMASG 346 (368)
T ss_dssp ESCG-GGBCHHHHHHHHHHHHHHSCTTCEEEEEECCCCSSCCCCHHHHHHHHHHHHHHHHSSBCCCCCHHHHHHHHHHTT
T ss_pred echh-hcCCHHHHHHHHHHHHHHcCCCCEEEEEEeccCCCCCCchhhhHHHhhhHHHHhhcCCCccCCHHHHHHHHHHCC
Confidence 9999 44455667789999999999999999874443322110000 00000000000011123578999999999
Q ss_pred CeEEEecc
Q 026036 229 LEVKHLGS 236 (244)
Q Consensus 229 f~v~~~~~ 236 (244)
|+++++..
T Consensus 347 F~~v~~~~ 354 (368)
T 3reo_A 347 FRGFKVAS 354 (368)
T ss_dssp CCEEEEEE
T ss_pred CeeeEEEE
Confidence 99887754
|
| >2yvl_A TRMI protein, hypothetical protein; tRNA, methyltransferase, S-adenosylmethionine, structural GE NPPSFA; HET: SAM; 2.20A {Aquifex aeolicus} | Back alignment and structure |
|---|
Probab=99.46 E-value=1.9e-12 Score=103.96 Aligned_cols=106 Identities=16% Similarity=0.134 Sum_probs=79.0
Q ss_pred hccCcccCCeEEEeCCCCcHHHHHHHHhCCCeEEEEeCChHHHHHHHHHhHHhcCCCCCcceEeeecCCCCCCCCCCccE
Q 026036 71 HHREWIERRRCIELGSGTGALAIFLRKAMNLDITTSDYNDQEIEDNIAYNSTTNGITPALPHIKHSWGDAFPIPNPDWDL 150 (244)
Q Consensus 71 ~~~~~~~~~~VLdlG~G~G~~~~~~a~~~~~~v~~~D~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fD~ 150 (244)
......++.+|||+|||+|.++..+++. +.+|+++|+++.++ +.++++...+++..++..+..+..+.. ...++||+
T Consensus 85 ~~~~~~~~~~vldiG~G~G~~~~~l~~~-~~~v~~vD~~~~~~-~~a~~~~~~~~~~~~~~~~~~d~~~~~-~~~~~~D~ 161 (248)
T 2yvl_A 85 LKLNLNKEKRVLEFGTGSGALLAVLSEV-AGEVWTFEAVEEFY-KTAQKNLKKFNLGKNVKFFNVDFKDAE-VPEGIFHA 161 (248)
T ss_dssp HHTTCCTTCEEEEECCTTSHHHHHHHHH-SSEEEEECSCHHHH-HHHHHHHHHTTCCTTEEEECSCTTTSC-CCTTCBSE
T ss_pred HhcCCCCCCEEEEeCCCccHHHHHHHHh-CCEEEEEecCHHHH-HHHHHHHHHcCCCCcEEEEEcChhhcc-cCCCcccE
Confidence 3344567889999999999999999988 88999999999987 788888877666444444444443321 13458999
Q ss_pred EEEcccccCCcChHHHHHHHHHHHHhcCCCCceEeec
Q 026036 151 ILASDILLYVKQYSNLIKSLSVLLKSYKPKDSQVGHL 187 (244)
Q Consensus 151 I~~~~~l~~~~~~~~l~~~l~~~~~~lk~gG~~~~~~ 187 (244)
|+++.. .. ...++.+.+.|+|||++++..
T Consensus 162 v~~~~~-----~~---~~~l~~~~~~L~~gG~l~~~~ 190 (248)
T 2yvl_A 162 AFVDVR-----EP---WHYLEKVHKSLMEGAPVGFLL 190 (248)
T ss_dssp EEECSS-----CG---GGGHHHHHHHBCTTCEEEEEE
T ss_pred EEECCc-----CH---HHHHHHHHHHcCCCCEEEEEe
Confidence 998422 22 267888999999999988874
|
| >4azs_A Methyltransferase WBDD; kinase; HET: AMP SAM; 2.15A {Escherichia coli} PDB: 4azt_A* 4azv_A* 4azw_A* | Back alignment and structure |
|---|
Probab=99.46 E-value=1.6e-14 Score=129.86 Aligned_cols=156 Identities=12% Similarity=0.103 Sum_probs=94.4
Q ss_pred cCCeEEEeCCCCcHHHHHHHHhCCCeEEEEeCChHHHHHHHHHhHHhcCCCCCcceEeeecCCCC-CCCCCCccEEEEcc
Q 026036 77 ERRRCIELGSGTGALAIFLRKAMNLDITTSDYNDQEIEDNIAYNSTTNGITPALPHIKHSWGDAF-PIPNPDWDLILASD 155 (244)
Q Consensus 77 ~~~~VLdlG~G~G~~~~~~a~~~~~~v~~~D~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~fD~I~~~~ 155 (244)
++.+|||||||.|.++..+|+. +++|+|+|.++.++ +.++..+..++.. .+.....+..+.. ...+++||+|+|..
T Consensus 66 ~~~~vLDvGCG~G~~~~~la~~-ga~V~giD~~~~~i-~~a~~~a~~~~~~-~~~~~~~~~~~~~~~~~~~~fD~v~~~e 142 (569)
T 4azs_A 66 RPLNVLDLGCAQGFFSLSLASK-GATIVGIDFQQENI-NVCRALAEENPDF-AAEFRVGRIEEVIAALEEGEFDLAIGLS 142 (569)
T ss_dssp SCCEEEEETCTTSHHHHHHHHT-TCEEEEEESCHHHH-HHHHHHHHTSTTS-EEEEEECCHHHHHHHCCTTSCSEEEEES
T ss_pred CCCeEEEECCCCcHHHHHHHhC-CCEEEEECCCHHHH-HHHHHHHHhcCCC-ceEEEECCHHHHhhhccCCCccEEEECc
Confidence 5679999999999999999987 78999999999998 7888777665531 1222222221111 23456899999999
Q ss_pred cccCCcChHHHHHHHHHHHHhcCCCCceEeecccccCCCCCCCCCCCeEEEeee-eccCccchhhHHHHHhhcCCeEEEe
Q 026036 156 ILLYVKQYSNLIKSLSVLLKSYKPKDSQVGHLTKNEQGEGTEGLPWPAFLMSWR-RRIGKEDETIFFTSCENAGLEVKHL 234 (244)
Q Consensus 156 ~l~~~~~~~~l~~~l~~~~~~lk~gG~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~l~~~Gf~v~~~ 234 (244)
+++| -..+.....+..+.+.++++|+.++......+..-...... .|. ..+.. ..+|..++.+.|..+.-+
T Consensus 143 ~~eh-v~~~~~~~~~~~~~~tl~~~~~~~~~~~~~~e~~~~~~p~~-----~~~~~~~i~--~~~~~~~~~~~g~~~~~~ 214 (569)
T 4azs_A 143 VFHH-IVHLHGIDEVKRLLSRLADVTQAVILELAVKEEPFYWGVSQ-----PDDPRELIE--QCAFYRLIGEFDTHLSPV 214 (569)
T ss_dssp CHHH-HHHHHCHHHHHHHHHHHHHHSSEEEEECCCTTSSSGGGGGS-----CSSGGGGTT--TSSEEEEEEEECCSSSSC
T ss_pred chhc-CCCHHHHHHHHHHHHHhccccceeeEEeccccccccccCCC-----CccHHHhcC--HHHHHHHHHHcCCccccC
Confidence 9944 33333334455677778888877766322222110000000 010 01111 234555666777777777
Q ss_pred ccEEEEEec
Q 026036 235 GSRVYCIKL 243 (244)
Q Consensus 235 ~~~~~~~~~ 243 (244)
..+.|..++
T Consensus 215 ~~~~~~~s~ 223 (569)
T 4azs_A 215 PRPMYLVSN 223 (569)
T ss_dssp CEEEEEEES
T ss_pred CCceeeccC
Confidence 777776654
|
| >1dl5_A Protein-L-isoaspartate O-methyltransferase; isoaspartyl residues, protein repair, deamidation, post-translational modification; HET: SAH; 1.80A {Thermotoga maritima} SCOP: c.66.1.7 d.197.1.1 | Back alignment and structure |
|---|
Probab=99.46 E-value=3.1e-13 Score=112.95 Aligned_cols=116 Identities=15% Similarity=0.137 Sum_probs=84.2
Q ss_pred HHHHHHHhhccCcccCCeEEEeCCCCcHHHHHHHHhCC--CeEEEEeCChHHHHHHHHHhHHhcCCCCCcceEeeecCCC
Q 026036 63 FSFAEWLMHHREWIERRRCIELGSGTGALAIFLRKAMN--LDITTSDYNDQEIEDNIAYNSTTNGITPALPHIKHSWGDA 140 (244)
Q Consensus 63 ~~l~~~~~~~~~~~~~~~VLdlG~G~G~~~~~~a~~~~--~~v~~~D~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 140 (244)
..+.+.+.......++.+|||+|||+|.++..+++.+. .+|+++|++++++ +.++++...+++++ +..+..+..+.
T Consensus 61 ~~~~~~l~~~l~~~~~~~VLDiGcG~G~~~~~la~~~~~~~~v~gvD~s~~~~-~~a~~~~~~~g~~~-v~~~~~d~~~~ 138 (317)
T 1dl5_A 61 PSLMALFMEWVGLDKGMRVLEIGGGTGYNAAVMSRVVGEKGLVVSVEYSRKIC-EIAKRNVERLGIEN-VIFVCGDGYYG 138 (317)
T ss_dssp HHHHHHHHHHTTCCTTCEEEEECCTTSHHHHHHHHHHCTTCEEEEEESCHHHH-HHHHHHHHHTTCCS-EEEEESCGGGC
T ss_pred HHHHHHHHHhcCCCCcCEEEEecCCchHHHHHHHHhcCCCCEEEEEECCHHHH-HHHHHHHHHcCCCC-eEEEECChhhc
Confidence 34445555555666889999999999999999988753 4699999999987 88888887777632 44444343332
Q ss_pred CCCCCCCccEEEEcccccCCcChHHHHHHHHHHHHhcCCCCceEeecccc
Q 026036 141 FPIPNPDWDLILASDILLYVKQYSNLIKSLSVLLKSYKPKDSQVGHLTKN 190 (244)
Q Consensus 141 ~~~~~~~fD~I~~~~~l~~~~~~~~l~~~l~~~~~~lk~gG~~~~~~~~~ 190 (244)
.+ ..++||+|++..++ ++.. +.+.+.|||||++++.+...
T Consensus 139 ~~-~~~~fD~Iv~~~~~-~~~~--------~~~~~~LkpgG~lvi~~~~~ 178 (317)
T 1dl5_A 139 VP-EFSPYDVIFVTVGV-DEVP--------ETWFTQLKEGGRVIVPINLK 178 (317)
T ss_dssp CG-GGCCEEEEEECSBB-SCCC--------HHHHHHEEEEEEEEEEBCBG
T ss_pred cc-cCCCeEEEEEcCCH-HHHH--------HHHHHhcCCCcEEEEEECCC
Confidence 22 34689999999998 3322 35788999999999885433
|
| >1sui_A Caffeoyl-COA O-methyltransferase; rossmann fold, protein-cofactor-substrate complex; HET: SAH FRE; 2.70A {Medicago sativa} SCOP: c.66.1.1 PDB: 1sus_A* | Back alignment and structure |
|---|
Probab=99.45 E-value=1e-13 Score=111.80 Aligned_cols=104 Identities=14% Similarity=0.077 Sum_probs=77.1
Q ss_pred ccCCeEEEeCCCCcHHHHHHHHhC--CCeEEEEeCChHHHHHHHHHhHHhcCCCCCcceEeeecCCCCCCC------CCC
Q 026036 76 IERRRCIELGSGTGALAIFLRKAM--NLDITTSDYNDQEIEDNIAYNSTTNGITPALPHIKHSWGDAFPIP------NPD 147 (244)
Q Consensus 76 ~~~~~VLdlG~G~G~~~~~~a~~~--~~~v~~~D~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~ 147 (244)
.++.+|||||||+|..++.+++.. +.+|+++|+++.++ +.++++....++..++..+..+..+.++.. .++
T Consensus 78 ~~~~~VLeiG~G~G~~~~~la~~~~~~~~v~~iD~s~~~~-~~a~~~~~~~g~~~~i~~~~gda~~~l~~l~~~~~~~~~ 156 (247)
T 1sui_A 78 INAKNTMEIGVYTGYSLLATALAIPEDGKILAMDINKENY-ELGLPVIKKAGVDHKIDFREGPALPVLDEMIKDEKNHGS 156 (247)
T ss_dssp TTCCEEEEECCGGGHHHHHHHHHSCTTCEEEEEESCCHHH-HHHHHHHHHTTCGGGEEEEESCHHHHHHHHHHSGGGTTC
T ss_pred hCcCEEEEeCCCcCHHHHHHHHhCCCCCEEEEEECCHHHH-HHHHHHHHHcCCCCCeEEEECCHHHHHHHHHhccCCCCC
Confidence 356799999999999999998875 57999999999987 888888887776444444433222212211 468
Q ss_pred ccEEEEcccccCCcChHHHHHHHHHHHHhcCCCCceEee
Q 026036 148 WDLILASDILLYVKQYSNLIKSLSVLLKSYKPKDSQVGH 186 (244)
Q Consensus 148 fD~I~~~~~l~~~~~~~~l~~~l~~~~~~lk~gG~~~~~ 186 (244)
||+|++.... ......++.+.++|||||.+++.
T Consensus 157 fD~V~~d~~~------~~~~~~l~~~~~~LkpGG~lv~d 189 (247)
T 1sui_A 157 YDFIFVDADK------DNYLNYHKRLIDLVKVGGVIGYD 189 (247)
T ss_dssp BSEEEECSCS------TTHHHHHHHHHHHBCTTCCEEEE
T ss_pred EEEEEEcCch------HHHHHHHHHHHHhCCCCeEEEEe
Confidence 9999985332 23448889999999999998875
|
| >1g8a_A Fibrillarin-like PRE-rRNA processing protein; rRNA binding, RNA binding, structural genomics, BSGC structure funded by NIH; 1.40A {Pyrococcus horikoshii} SCOP: c.66.1.3 PDB: 2nnw_B 3nmu_F* 3nvk_I* 3nvm_B 1pry_A | Back alignment and structure |
|---|
Probab=99.44 E-value=4e-13 Score=106.68 Aligned_cols=115 Identities=9% Similarity=-0.001 Sum_probs=78.6
Q ss_pred HHHHHHH---hhccCcccCCeEEEeCCCCcHHHHHHHHhC--CCeEEEEeCChHHHHHHHHHhHHhcCCCCCcceEeeec
Q 026036 63 FSFAEWL---MHHREWIERRRCIELGSGTGALAIFLRKAM--NLDITTSDYNDQEIEDNIAYNSTTNGITPALPHIKHSW 137 (244)
Q Consensus 63 ~~l~~~~---~~~~~~~~~~~VLdlG~G~G~~~~~~a~~~--~~~v~~~D~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~ 137 (244)
..++..+ .......++.+|||+|||+|.++..+++.. ..+|+++|+++.++ +.+++++..+ .++..+..+.
T Consensus 56 ~~~~~~i~~~l~~~~~~~~~~vLDlG~G~G~~~~~la~~~~~~~~v~~vD~s~~~~-~~~~~~~~~~---~~v~~~~~d~ 131 (227)
T 1g8a_A 56 SKLGAAIMNGLKNFPIKPGKSVLYLGIASGTTASHVSDIVGWEGKIFGIEFSPRVL-RELVPIVEER---RNIVPILGDA 131 (227)
T ss_dssp CHHHHHHHTTCCCCCCCTTCEEEEETTTSTTHHHHHHHHHCTTSEEEEEESCHHHH-HHHHHHHSSC---TTEEEEECCT
T ss_pred hhHHHHHHhhHHhcCCCCCCEEEEEeccCCHHHHHHHHHhCCCeEEEEEECCHHHH-HHHHHHHhcc---CCCEEEEccC
Confidence 3444555 333345678899999999999999998774 47999999999987 6666666543 2334444443
Q ss_pred CCCC--CCCCCCccEEEEcccccCCcChHHHHHHHHHHHHhcCCCCceEee
Q 026036 138 GDAF--PIPNPDWDLILASDILLYVKQYSNLIKSLSVLLKSYKPKDSQVGH 186 (244)
Q Consensus 138 ~~~~--~~~~~~fD~I~~~~~l~~~~~~~~l~~~l~~~~~~lk~gG~~~~~ 186 (244)
.+.. ....++||+|++..+. .......++++.+.|||||++++.
T Consensus 132 ~~~~~~~~~~~~~D~v~~~~~~-----~~~~~~~l~~~~~~LkpgG~l~~~ 177 (227)
T 1g8a_A 132 TKPEEYRALVPKVDVIFEDVAQ-----PTQAKILIDNAEVYLKRGGYGMIA 177 (227)
T ss_dssp TCGGGGTTTCCCEEEEEECCCS-----TTHHHHHHHHHHHHEEEEEEEEEE
T ss_pred CCcchhhcccCCceEEEECCCC-----HhHHHHHHHHHHHhcCCCCEEEEE
Confidence 3311 1123589999975441 122234589999999999998886
|
| >2qm3_A Predicted methyltransferase; putative methyltransferase, structural genomics, pyrococcus PSI-2, protein structure initiative; HET: MSE; 2.05A {Pyrococcus furiosus dsm 3638} | Back alignment and structure |
|---|
Probab=99.44 E-value=2.7e-12 Score=109.57 Aligned_cols=101 Identities=12% Similarity=0.103 Sum_probs=78.6
Q ss_pred ccCCeEEEeCCCCcHHHHHHHHhCC-CeEEEEeCChHHHHHHHHHhHHhcCCCCCcceEeeecCCCCCC-CCCCccEEEE
Q 026036 76 IERRRCIELGSGTGALAIFLRKAMN-LDITTSDYNDQEIEDNIAYNSTTNGITPALPHIKHSWGDAFPI-PNPDWDLILA 153 (244)
Q Consensus 76 ~~~~~VLdlG~G~G~~~~~~a~~~~-~~v~~~D~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~fD~I~~ 153 (244)
.++.+|||+| |+|.+++.++..+. .+|+++|+++.++ +.+++|+..+++. ++..+..+..+.++. ..++||+|++
T Consensus 171 ~~~~~VLDlG-G~G~~~~~la~~~~~~~v~~vDi~~~~l-~~a~~~~~~~g~~-~v~~~~~D~~~~l~~~~~~~fD~Vi~ 247 (373)
T 2qm3_A 171 LENKDIFVLG-DDDLTSIALMLSGLPKRIAVLDIDERLT-KFIEKAANEIGYE-DIEIFTFDLRKPLPDYALHKFDTFIT 247 (373)
T ss_dssp STTCEEEEES-CTTCHHHHHHHHTCCSEEEEECSCHHHH-HHHHHHHHHHTCC-CEEEECCCTTSCCCTTTSSCBSEEEE
T ss_pred CCCCEEEEEC-CCCHHHHHHHHhCCCCEEEEEECCHHHH-HHHHHHHHHcCCC-CEEEEEChhhhhchhhccCCccEEEE
Confidence 4678999999 99999999988764 7999999999997 8999998888774 455554444443432 3458999999
Q ss_pred cccccCCcChHHHHHHHHHHHHhcCCCCce
Q 026036 154 SDILLYVKQYSNLIKSLSVLLKSYKPKDSQ 183 (244)
Q Consensus 154 ~~~l~~~~~~~~l~~~l~~~~~~lk~gG~~ 183 (244)
+.++ ... .+...++++.+.|||||++
T Consensus 248 ~~p~-~~~---~~~~~l~~~~~~LkpgG~~ 273 (373)
T 2qm3_A 248 DPPE-TLE---AIRAFVGRGIATLKGPRCA 273 (373)
T ss_dssp CCCS-SHH---HHHHHHHHHHHTBCSTTCE
T ss_pred CCCC-chH---HHHHHHHHHHHHcccCCeE
Confidence 8765 432 2568899999999999965
|
| >3p9c_A Caffeic acid O-methyltransferase; S-adenosylmethionine dependent O-methyltransferase; HET: SAH; 1.80A {Lolium perenne} PDB: 3p9i_A* 3p9k_A* | Back alignment and structure |
|---|
Probab=99.44 E-value=2.7e-12 Score=109.17 Aligned_cols=148 Identities=14% Similarity=0.074 Sum_probs=94.9
Q ss_pred cccCCeEEEeCCCCcHHHHHHHHhC-CCeEEEEeCChHHHHHHHHHhHHhcCCCCCcceEeeecCCCCCCCCCCccEEEE
Q 026036 75 WIERRRCIELGSGTGALAIFLRKAM-NLDITTSDYNDQEIEDNIAYNSTTNGITPALPHIKHSWGDAFPIPNPDWDLILA 153 (244)
Q Consensus 75 ~~~~~~VLdlG~G~G~~~~~~a~~~-~~~v~~~D~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fD~I~~ 153 (244)
..++.+|||||||+|..+..+++.. ..+++++|+ +.++ +.++.+ .++..+..+..+ +.+. . |+|++
T Consensus 199 ~~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~-~~a~~~-------~~v~~~~~D~~~--~~p~-~-D~v~~ 265 (364)
T 3p9c_A 199 FEGLGTLVDVGGGVGATVAAIAAHYPTIKGVNFDL-PHVI-SEAPQF-------PGVTHVGGDMFK--EVPS-G-DTILM 265 (364)
T ss_dssp TTTCSEEEEETCTTSHHHHHHHHHCTTCEEEEEEC-HHHH-TTCCCC-------TTEEEEECCTTT--CCCC-C-SEEEE
T ss_pred ccCCCEEEEeCCCCCHHHHHHHHHCCCCeEEEecC-HHHH-Hhhhhc-------CCeEEEeCCcCC--CCCC-C-CEEEe
Confidence 4466899999999999999998876 678999999 6665 333211 234444444433 2332 3 99999
Q ss_pred cccccCCcChHHHHHHHHHHHHhcCCCCceEeecccccCCCCCCCCC-----CCeEEEeeeeccCccchhhHHHHHhhcC
Q 026036 154 SDILLYVKQYSNLIKSLSVLLKSYKPKDSQVGHLTKNEQGEGTEGLP-----WPAFLMSWRRRIGKEDETIFFTSCENAG 228 (244)
Q Consensus 154 ~~~l~~~~~~~~l~~~l~~~~~~lk~gG~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~l~~~G 228 (244)
..++++ ...++..+.++++++.|||||++++.....+......... ....+..........+.+++.++++++|
T Consensus 266 ~~vlh~-~~d~~~~~~L~~~~~~L~pgG~l~i~e~~~~~~~~~~~~~~~~~~~d~~m~~~~~~g~~rt~~e~~~ll~~AG 344 (364)
T 3p9c_A 266 KWILHD-WSDQHCATLLKNCYDALPAHGKVVLVQCILPVNPEANPSSQGVFHVDMIMLAHNPGGRERYEREFQALARGAG 344 (364)
T ss_dssp ESCGGG-SCHHHHHHHHHHHHHHSCTTCEEEEEECCBCSSCCSSHHHHHHHHHHHHHHHHCSSCCCCBHHHHHHHHHHTT
T ss_pred hHHhcc-CCHHHHHHHHHHHHHHcCCCCEEEEEEeccCCCCCcchhhhhHHHhHHHHHhcccCCccCCHHHHHHHHHHCC
Confidence 999944 4456778999999999999999998744433221100000 0000000000111123578999999999
Q ss_pred CeEEEecc
Q 026036 229 LEVKHLGS 236 (244)
Q Consensus 229 f~v~~~~~ 236 (244)
|+++++..
T Consensus 345 F~~v~~~~ 352 (364)
T 3p9c_A 345 FTGVKSTY 352 (364)
T ss_dssp CCEEEEEE
T ss_pred CceEEEEE
Confidence 99887754
|
| >3c3p_A Methyltransferase; NP_951602.1, structural genomics, joint for structural genomics, JCSG, protein structure initiative transferase; 1.90A {Geobacter sulfurreducens pca} | Back alignment and structure |
|---|
Probab=99.44 E-value=9.4e-14 Score=109.09 Aligned_cols=102 Identities=10% Similarity=0.082 Sum_probs=75.7
Q ss_pred cCCeEEEeCCCCcHHHHHHHHhC--CCeEEEEeCChHHHHHHHHHhHHhcCCCCCcceEeeecCCCCCCCCCCccEEEEc
Q 026036 77 ERRRCIELGSGTGALAIFLRKAM--NLDITTSDYNDQEIEDNIAYNSTTNGITPALPHIKHSWGDAFPIPNPDWDLILAS 154 (244)
Q Consensus 77 ~~~~VLdlG~G~G~~~~~~a~~~--~~~v~~~D~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fD~I~~~ 154 (244)
++.+|||+|||+|..++.+++.. +.+|+++|+++.++ +.++++....++..++..+..+..+.++...+ ||+|++.
T Consensus 56 ~~~~vLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~-~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~-fD~v~~~ 133 (210)
T 3c3p_A 56 QPQLVVVPGDGLGCASWWFARAISISSRVVMIDPDRDNV-EHARRMLHDNGLIDRVELQVGDPLGIAAGQRD-IDILFMD 133 (210)
T ss_dssp CCSEEEEESCGGGHHHHHHHTTSCTTCEEEEEESCHHHH-HHHHHHHHHHSGGGGEEEEESCHHHHHTTCCS-EEEEEEE
T ss_pred CCCEEEEEcCCccHHHHHHHHhCCCCCEEEEEECCHHHH-HHHHHHHHHCCCCceEEEEEecHHHHhccCCC-CCEEEEc
Confidence 56799999999999999998765 57999999999987 78888877666543444444333222233345 9999986
Q ss_pred ccccCCcChHHHHHHHHHHHHhcCCCCceEee
Q 026036 155 DILLYVKQYSNLIKSLSVLLKSYKPKDSQVGH 186 (244)
Q Consensus 155 ~~l~~~~~~~~l~~~l~~~~~~lk~gG~~~~~ 186 (244)
... ......++++.+.|||||.+++.
T Consensus 134 ~~~------~~~~~~l~~~~~~LkpgG~lv~~ 159 (210)
T 3c3p_A 134 CDV------FNGADVLERMNRCLAKNALLIAV 159 (210)
T ss_dssp TTT------SCHHHHHHHHGGGEEEEEEEEEE
T ss_pred CCh------hhhHHHHHHHHHhcCCCeEEEEE
Confidence 322 23348889999999999988875
|
| >1af7_A Chemotaxis receptor methyltransferase CHER; chemotaxis receptor methylation; HET: SAH; 2.00A {Salmonella typhimurium} SCOP: a.58.1.1 c.66.1.8 PDB: 1bc5_A* | Back alignment and structure |
|---|
Probab=99.44 E-value=3.4e-13 Score=110.08 Aligned_cols=107 Identities=14% Similarity=0.165 Sum_probs=73.3
Q ss_pred cCCeEEEeCCCCcH----HHHHHHHh-C----CCeEEEEeCChHHHHHHHHHhHHh----cCCC----------------
Q 026036 77 ERRRCIELGSGTGA----LAIFLRKA-M----NLDITTSDYNDQEIEDNIAYNSTT----NGIT---------------- 127 (244)
Q Consensus 77 ~~~~VLdlG~G~G~----~~~~~a~~-~----~~~v~~~D~~~~~l~~~~~~~~~~----~~~~---------------- 127 (244)
++.+|||+|||||. +++.++.. . +.+|+|+|+|+.|+ +.+++++.. .+++
T Consensus 105 ~~~rIld~GCgTGee~ysiAi~L~e~~~~~~~~~~I~atDis~~~L-~~Ar~~~y~~~~~~~~~~~~~~~~f~~~~~~~~ 183 (274)
T 1af7_A 105 GEYRVWSAAASTGEEPYSIAITLADALGMAPGRWKVFASDIDTEVL-EKARSGIYRLSELKTLSPQQLQRYFMRGTGPHE 183 (274)
T ss_dssp SCEEEEESCCTTTHHHHHHHHHHHHHHCSCTTSEEEEEEESCHHHH-HHHHHTEEEGGGGTTSCHHHHHHHEEECCTTSC
T ss_pred CCcEEEEeeccCChhHHHHHHHHHHhcccCCCCeEEEEEECCHHHH-HHHHhcCCchhhhhcCCHHHHHHHhhccccCCC
Confidence 45799999999998 56666654 2 25899999999998 777766411 0000
Q ss_pred ----------CCcceEeeecCCCCCCC-CCCccEEEEcccccCCcChHHHHHHHHHHHHhcCCCCceEee
Q 026036 128 ----------PALPHIKHSWGDAFPIP-NPDWDLILASDILLYVKQYSNLIKSLSVLLKSYKPKDSQVGH 186 (244)
Q Consensus 128 ----------~~~~~~~~~~~~~~~~~-~~~fD~I~~~~~l~~~~~~~~l~~~l~~~~~~lk~gG~~~~~ 186 (244)
..+.....++.+ .+++ .++||+|+|.+++.+ ...+...++++.+++.|+|||.+++.
T Consensus 184 ~~~~v~~~lr~~V~F~~~dl~~-~~~~~~~~fDlI~crnvliy-f~~~~~~~vl~~~~~~L~pgG~L~lg 251 (274)
T 1af7_A 184 GLVRVRQELANYVEFSSVNLLE-KQYNVPGPFDAIFCRNVMIY-FDKTTQEDILRRFVPLLKPDGLLFAG 251 (274)
T ss_dssp SEEEECHHHHTTEEEEECCTTC-SSCCCCCCEEEEEECSSGGG-SCHHHHHHHHHHHGGGEEEEEEEEEC
T ss_pred CceeechhhcccCeEEecccCC-CCCCcCCCeeEEEECCchHh-CCHHHHHHHHHHHHHHhCCCcEEEEE
Confidence 112233333332 1232 468999999999833 34555679999999999999988875
|
| >4dmg_A Putative uncharacterized protein TTHA1493; rRNA, methyltransferase, S-adenosyl-methionine, 23S ribosoma transferase; HET: SAM; 1.70A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=99.43 E-value=6.3e-13 Score=113.92 Aligned_cols=106 Identities=9% Similarity=0.007 Sum_probs=76.4
Q ss_pred cCCeEEEeCCCCcHHHHHHHHhCCCeEEEEeCChHHHHHHHHHhHHhcCCCCCcceEeeecCCCCCCCCCCccEEEEccc
Q 026036 77 ERRRCIELGSGTGALAIFLRKAMNLDITTSDYNDQEIEDNIAYNSTTNGITPALPHIKHSWGDAFPIPNPDWDLILASDI 156 (244)
Q Consensus 77 ~~~~VLdlG~G~G~~~~~~a~~~~~~v~~~D~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fD~I~~~~~ 156 (244)
+|.+|||+|||+|.+++.++.. +++|+++|+|+.++ +.+++|+..|++..+ ....+..+.++...+.||+|++..+
T Consensus 214 ~g~~VLDlg~GtG~~sl~~a~~-ga~V~avDis~~al-~~a~~n~~~ng~~~~--~~~~D~~~~l~~~~~~fD~Ii~dpP 289 (393)
T 4dmg_A 214 PGERVLDVYSYVGGFALRAARK-GAYALAVDKDLEAL-GVLDQAALRLGLRVD--IRHGEALPTLRGLEGPFHHVLLDPP 289 (393)
T ss_dssp TTCEEEEESCTTTHHHHHHHHT-TCEEEEEESCHHHH-HHHHHHHHHHTCCCE--EEESCHHHHHHTCCCCEEEEEECCC
T ss_pred CCCeEEEcccchhHHHHHHHHc-CCeEEEEECCHHHH-HHHHHHHHHhCCCCc--EEEccHHHHHHHhcCCCCEEEECCC
Confidence 5899999999999999999986 55699999999998 899999999988432 2222221111111334999999776
Q ss_pred ccCCcC------hHHHHHHHHHHHHhcCCCCceEee
Q 026036 157 LLYVKQ------YSNLIKSLSVLLKSYKPKDSQVGH 186 (244)
Q Consensus 157 l~~~~~------~~~l~~~l~~~~~~lk~gG~~~~~ 186 (244)
.|.... .....+.++.+.++|+|||.+++.
T Consensus 290 ~f~~~~~~~~~~~~~~~~ll~~a~~~LkpGG~Lv~~ 325 (393)
T 4dmg_A 290 TLVKRPEELPAMKRHLVDLVREALRLLAEEGFLWLS 325 (393)
T ss_dssp CCCSSGGGHHHHHHHHHHHHHHHHHTEEEEEEEEEE
T ss_pred cCCCCHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEE
Confidence 533211 123457788889999999987754
|
| >1ixk_A Methyltransferase; open beta sheet; 1.90A {Pyrococcus horikoshii} SCOP: c.66.1.38 | Back alignment and structure |
|---|
Probab=99.43 E-value=9.9e-13 Score=109.75 Aligned_cols=110 Identities=15% Similarity=0.103 Sum_probs=76.7
Q ss_pred CcccCCeEEEeCCCCcHHHHHHHHhC--CCeEEEEeCChHHHHHHHHHhHHhcCCCCCcceEeeecCCCCCCCCCCccEE
Q 026036 74 EWIERRRCIELGSGTGALAIFLRKAM--NLDITTSDYNDQEIEDNIAYNSTTNGITPALPHIKHSWGDAFPIPNPDWDLI 151 (244)
Q Consensus 74 ~~~~~~~VLdlG~G~G~~~~~~a~~~--~~~v~~~D~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fD~I 151 (244)
...++.+|||+|||+|..+..++... ..+|+++|+++.++ +.+++|+..+++. ++..+..+..+ ++...++||+|
T Consensus 115 ~~~~g~~VLDlg~G~G~~t~~la~~~~~~~~v~avD~s~~~l-~~a~~~~~~~g~~-~v~~~~~D~~~-~~~~~~~fD~I 191 (315)
T 1ixk_A 115 DPKPGEIVADMAAAPGGKTSYLAQLMRNDGVIYAFDVDENRL-RETRLNLSRLGVL-NVILFHSSSLH-IGELNVEFDKI 191 (315)
T ss_dssp CCCTTCEEEECCSSCSHHHHHHHHHTTTCSEEEEECSCHHHH-HHHHHHHHHHTCC-SEEEESSCGGG-GGGGCCCEEEE
T ss_pred CCCCCCEEEEeCCCCCHHHHHHHHHhCCCCEEEEEcCCHHHH-HHHHHHHHHhCCC-eEEEEECChhh-cccccccCCEE
Confidence 34578899999999999999998875 47899999999987 8888888877763 23333222221 11124589999
Q ss_pred EEccccc-----CC-c------ChH-------HHHHHHHHHHHhcCCCCceEee
Q 026036 152 LASDILL-----YV-K------QYS-------NLIKSLSVLLKSYKPKDSQVGH 186 (244)
Q Consensus 152 ~~~~~l~-----~~-~------~~~-------~l~~~l~~~~~~lk~gG~~~~~ 186 (244)
++..+.. .. . ... ...+.++++.+.|||||+++++
T Consensus 192 l~d~Pcsg~g~~~~~p~~~~~~~~~~~~~~~~~q~~~L~~~~~~LkpGG~lv~s 245 (315)
T 1ixk_A 192 LLDAPCTGSGTIHKNPERKWNRTMDDIKFCQGLQMRLLEKGLEVLKPGGILVYS 245 (315)
T ss_dssp EEECCTTSTTTCC--------CCHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEE
T ss_pred EEeCCCCCcccccCChhHhhcCCHHHHHHHHHHHHHHHHHHHHhCCCCCEEEEE
Confidence 9854310 11 0 001 1248889999999999998875
|
| >3tm4_A TRNA (guanine N2-)-methyltransferase TRM14; rossmann fold, thump domain, tRNA methyltransferase; HET: SAM; 1.95A {Pyrococcus furiosus} PDB: 3tlj_A* 3tm5_A* | Back alignment and structure |
|---|
Probab=99.43 E-value=1.5e-12 Score=111.06 Aligned_cols=140 Identities=14% Similarity=0.130 Sum_probs=97.9
Q ss_pred HHHHHHHHhhccCcccCCeEEEeCCCCcHHHHHHHHhCC-CeEEEEeCChHHHHHHHHHhHHhcCCCCCcceEeeecCCC
Q 026036 62 TFSFAEWLMHHREWIERRRCIELGSGTGALAIFLRKAMN-LDITTSDYNDQEIEDNIAYNSTTNGITPALPHIKHSWGDA 140 (244)
Q Consensus 62 ~~~l~~~~~~~~~~~~~~~VLdlG~G~G~~~~~~a~~~~-~~v~~~D~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 140 (244)
...++..+.... ..++.+|||+|||+|.+++.++..+. .+|+|+|+++.++ +.++.|+..+++...+..+..+..+
T Consensus 203 ~~~la~~l~~~~-~~~~~~vLD~gCGsG~~~i~~a~~~~~~~v~g~Dis~~~l-~~A~~n~~~~gl~~~i~~~~~D~~~- 279 (373)
T 3tm4_A 203 KASIANAMIELA-ELDGGSVLDPMCGSGTILIELALRRYSGEIIGIEKYRKHL-IGAEMNALAAGVLDKIKFIQGDATQ- 279 (373)
T ss_dssp CHHHHHHHHHHH-TCCSCCEEETTCTTCHHHHHHHHTTCCSCEEEEESCHHHH-HHHHHHHHHTTCGGGCEEEECCGGG-
T ss_pred cHHHHHHHHHhh-cCCCCEEEEccCcCcHHHHHHHHhCCCCeEEEEeCCHHHH-HHHHHHHHHcCCCCceEEEECChhh-
Confidence 445666655555 56788999999999999999988753 3899999999997 8999999888775444444444332
Q ss_pred CCCCCCCccEEEEcccccCCc-----ChHHH-HHHHHHHHHhcCCCCceEeecccccCCCCCCCCCCCeEEEeeeeccCc
Q 026036 141 FPIPNPDWDLILASDILLYVK-----QYSNL-IKSLSVLLKSYKPKDSQVGHLTKNEQGEGTEGLPWPAFLMSWRRRIGK 214 (244)
Q Consensus 141 ~~~~~~~fD~I~~~~~l~~~~-----~~~~l-~~~l~~~~~~lk~gG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 214 (244)
++..+++||+|+++.++ ... ....+ .+.++.+.++| +|.+++++
T Consensus 280 ~~~~~~~fD~Ii~npPy-g~r~~~~~~~~~ly~~~~~~l~r~l--~g~~~~i~--------------------------- 329 (373)
T 3tm4_A 280 LSQYVDSVDFAISNLPY-GLKIGKKSMIPDLYMKFFNELAKVL--EKRGVFIT--------------------------- 329 (373)
T ss_dssp GGGTCSCEEEEEEECCC-C------CCHHHHHHHHHHHHHHHE--EEEEEEEE---------------------------
T ss_pred CCcccCCcCEEEECCCC-CcccCcchhHHHHHHHHHHHHHHHc--CCeEEEEE---------------------------
Confidence 33445789999998775 321 12233 46778888888 45444431
Q ss_pred cchhhHHHHHhhcCCeEEEe
Q 026036 215 EDETIFFTSCENAGLEVKHL 234 (244)
Q Consensus 215 ~~~~~~~~~l~~~Gf~v~~~ 234 (244)
.+...+.+.+++.||++.+.
T Consensus 330 ~~~~~~~~~~~~~G~~~~~~ 349 (373)
T 3tm4_A 330 TEKKAIEEAIAENGFEIIHH 349 (373)
T ss_dssp SCHHHHHHHHHHTTEEEEEE
T ss_pred CCHHHHHHHHHHcCCEEEEE
Confidence 12367778888999998764
|
| >3r3h_A O-methyltransferase, SAM-dependent; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 2.65A {Legionella pneumophila subsp} | Back alignment and structure |
|---|
Probab=99.43 E-value=2.6e-14 Score=114.98 Aligned_cols=105 Identities=17% Similarity=0.130 Sum_probs=79.0
Q ss_pred cccCCeEEEeCCCCcHHHHHHHHhC--CCeEEEEeCChHHHHHHHHHhHHhcCCCCCcceEeeecCCCCCCC-----CCC
Q 026036 75 WIERRRCIELGSGTGALAIFLRKAM--NLDITTSDYNDQEIEDNIAYNSTTNGITPALPHIKHSWGDAFPIP-----NPD 147 (244)
Q Consensus 75 ~~~~~~VLdlG~G~G~~~~~~a~~~--~~~v~~~D~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~ 147 (244)
..++.+|||||||+|..++.+++.. +.+|+++|++++++ +.++++...+++..++..+..+..+.++.. .++
T Consensus 58 ~~~~~~VLDiG~G~G~~t~~la~~~~~~~~v~~iD~~~~~~-~~a~~~~~~~g~~~~i~~~~gda~~~l~~~~~~~~~~~ 136 (242)
T 3r3h_A 58 LTRAKKVLELGTFTGYSALAMSLALPDDGQVITCDINEGWT-KHAHPYWREAKQEHKIKLRLGPALDTLHSLLNEGGEHQ 136 (242)
T ss_dssp HHTCSEEEEEESCCSHHHHHHHHTSCTTCEEEEEECCCSSC-CCSHHHHHHTTCTTTEEEEESCHHHHHHHHHHHHCSSC
T ss_pred hcCcCEEEEeeCCcCHHHHHHHHhCCCCCEEEEEECCHHHH-HHHHHHHHHcCCCCcEEEEEcCHHHHHHHHhhccCCCC
Confidence 3466899999999999999999865 57999999999987 788888888777555555443332222211 468
Q ss_pred ccEEEEcccccCCcChHHHHHHHHHHHHhcCCCCceEee
Q 026036 148 WDLILASDILLYVKQYSNLIKSLSVLLKSYKPKDSQVGH 186 (244)
Q Consensus 148 fD~I~~~~~l~~~~~~~~l~~~l~~~~~~lk~gG~~~~~ 186 (244)
||+|++... .......++.+.++|+|||.+++.
T Consensus 137 fD~V~~d~~------~~~~~~~l~~~~~~LkpGG~lv~d 169 (242)
T 3r3h_A 137 FDFIFIDAD------KTNYLNYYELALKLVTPKGLIAID 169 (242)
T ss_dssp EEEEEEESC------GGGHHHHHHHHHHHEEEEEEEEEE
T ss_pred EeEEEEcCC------hHHhHHHHHHHHHhcCCCeEEEEE
Confidence 999998543 234457899999999999988876
|
| >1jg1_A PIMT;, protein-L-isoaspartate O-methyltransferase; rossmann methyltransferase, protein repair isomerization; HET: SAH; 1.20A {Pyrococcus furiosus} SCOP: c.66.1.7 PDB: 1jg2_A* 1jg3_A* 1jg4_A* | Back alignment and structure |
|---|
Probab=99.42 E-value=5.1e-13 Score=106.79 Aligned_cols=114 Identities=13% Similarity=0.138 Sum_probs=81.1
Q ss_pred HHHHHHHhhccCcccCCeEEEeCCCCcHHHHHHHHhCCCeEEEEeCChHHHHHHHHHhHHhcCCCCCcceEeeecCCCCC
Q 026036 63 FSFAEWLMHHREWIERRRCIELGSGTGALAIFLRKAMNLDITTSDYNDQEIEDNIAYNSTTNGITPALPHIKHSWGDAFP 142 (244)
Q Consensus 63 ~~l~~~~~~~~~~~~~~~VLdlG~G~G~~~~~~a~~~~~~v~~~D~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 142 (244)
..+...+.+.....++.+|||+|||+|.++..+++..+.+|+++|+++.++ +.++++...+++.. +..+..+. ..+
T Consensus 77 ~~~~~~~~~~l~~~~~~~vLdiG~G~G~~~~~la~~~~~~v~~vD~~~~~~-~~a~~~~~~~~~~~-v~~~~~d~--~~~ 152 (235)
T 1jg1_A 77 PHMVAIMLEIANLKPGMNILEVGTGSGWNAALISEIVKTDVYTIERIPELV-EFAKRNLERAGVKN-VHVILGDG--SKG 152 (235)
T ss_dssp HHHHHHHHHHHTCCTTCCEEEECCTTSHHHHHHHHHHCSCEEEEESCHHHH-HHHHHHHHHTTCCS-EEEEESCG--GGC
T ss_pred HHHHHHHHHhcCCCCCCEEEEEeCCcCHHHHHHHHHhCCEEEEEeCCHHHH-HHHHHHHHHcCCCC-cEEEECCc--ccC
Confidence 334445554445667889999999999999999887558899999999987 78888877766632 33333332 122
Q ss_pred CCC-CCccEEEEcccccCCcChHHHHHHHHHHHHhcCCCCceEeeccc
Q 026036 143 IPN-PDWDLILASDILLYVKQYSNLIKSLSVLLKSYKPKDSQVGHLTK 189 (244)
Q Consensus 143 ~~~-~~fD~I~~~~~l~~~~~~~~l~~~l~~~~~~lk~gG~~~~~~~~ 189 (244)
... .+||+|++..++ .+. . .++.+.|+|||++++.+..
T Consensus 153 ~~~~~~fD~Ii~~~~~-~~~--~------~~~~~~L~pgG~lvi~~~~ 191 (235)
T 1jg1_A 153 FPPKAPYDVIIVTAGA-PKI--P------EPLIEQLKIGGKLIIPVGS 191 (235)
T ss_dssp CGGGCCEEEEEECSBB-SSC--C------HHHHHTEEEEEEEEEEECS
T ss_pred CCCCCCccEEEECCcH-HHH--H------HHHHHhcCCCcEEEEEEec
Confidence 222 359999999887 322 2 2578999999999887543
|
| >1fp1_D Isoliquiritigenin 2'-O-methyltransferase; protein-substrate, protein-product complex; HET: SAH HCC; 1.82A {Medicago sativa} SCOP: a.4.5.29 c.66.1.12 PDB: 1fpq_A* | Back alignment and structure |
|---|
Probab=99.41 E-value=1.4e-12 Score=111.24 Aligned_cols=146 Identities=13% Similarity=0.119 Sum_probs=93.9
Q ss_pred cccCCeEEEeCCCCcHHHHHHHHhC-CCeEEEEeCChHHHHHHHHHhHHhcCCCCCcceEeeecCCCCCCCCCCccEEEE
Q 026036 75 WIERRRCIELGSGTGALAIFLRKAM-NLDITTSDYNDQEIEDNIAYNSTTNGITPALPHIKHSWGDAFPIPNPDWDLILA 153 (244)
Q Consensus 75 ~~~~~~VLdlG~G~G~~~~~~a~~~-~~~v~~~D~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fD~I~~ 153 (244)
..++.+|||||||+|..+..+++.. ..+++++|+ +.++ +.+++ . ..+..+..+..+ +.+ .||+|++
T Consensus 207 ~~~~~~vLDvG~G~G~~~~~l~~~~~~~~~~~~D~-~~~~-~~a~~------~-~~v~~~~~d~~~--~~~--~~D~v~~ 273 (372)
T 1fp1_D 207 FEGISTLVDVGGGSGRNLELIISKYPLIKGINFDL-PQVI-ENAPP------L-SGIEHVGGDMFA--SVP--QGDAMIL 273 (372)
T ss_dssp TTTCSEEEEETCTTSHHHHHHHHHCTTCEEEEEEC-HHHH-TTCCC------C-TTEEEEECCTTT--CCC--CEEEEEE
T ss_pred cCCCCEEEEeCCCCcHHHHHHHHHCCCCeEEEeCh-HHHH-Hhhhh------c-CCCEEEeCCccc--CCC--CCCEEEE
Confidence 4467899999999999999998886 678999999 7766 43321 1 123334333333 222 3999999
Q ss_pred cccccCCcChHHHHHHHHHHHHhcCCCCceEeecccccCCCCCC-----CCCCCeEEE-eeeeccCccchhhHHHHHhhc
Q 026036 154 SDILLYVKQYSNLIKSLSVLLKSYKPKDSQVGHLTKNEQGEGTE-----GLPWPAFLM-SWRRRIGKEDETIFFTSCENA 227 (244)
Q Consensus 154 ~~~l~~~~~~~~l~~~l~~~~~~lk~gG~~~~~~~~~~~~~~~~-----~~~~~~~~~-~~~~~~~~~~~~~~~~~l~~~ 227 (244)
+.++ ++...+...+.++++++.|||||++++............ ......+.. ....+ ..+.+++.++++++
T Consensus 274 ~~~l-h~~~d~~~~~~l~~~~~~L~pgG~l~i~e~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~--~~t~~e~~~ll~~a 350 (372)
T 1fp1_D 274 KAVC-HNWSDEKCIEFLSNCHKALSPNGKVIIVEFILPEEPNTSEESKLVSTLDNLMFITVGGR--ERTEKQYEKLSKLS 350 (372)
T ss_dssp ESSG-GGSCHHHHHHHHHHHHHHEEEEEEEEEEEEEECSSCCSSHHHHHHHHHHHHHHHHHSCC--CEEHHHHHHHHHHT
T ss_pred eccc-ccCCHHHHHHHHHHHHHhcCCCCEEEEEEeccCCCCccchHHHHHHHhhHHHHhccCCc--cCCHHHHHHHHHHC
Confidence 9999 444445566999999999999999998844333221100 000000000 00011 12358899999999
Q ss_pred CCeEEEecc
Q 026036 228 GLEVKHLGS 236 (244)
Q Consensus 228 Gf~v~~~~~ 236 (244)
||+++++..
T Consensus 351 Gf~~~~~~~ 359 (372)
T 1fp1_D 351 GFSKFQVAC 359 (372)
T ss_dssp TCSEEEEEE
T ss_pred CCceEEEEE
Confidence 999887654
|
| >3bwc_A Spermidine synthase; SAM, SGPP, structura genomics, PSI, protein structure initiative, structural GEN pathogenic protozoa consortium; HET: MSE SAM; 2.30A {Trypanosoma cruzi} PDB: 3bwb_A* | Back alignment and structure |
|---|
Probab=99.41 E-value=3.2e-13 Score=112.21 Aligned_cols=136 Identities=11% Similarity=0.049 Sum_probs=86.0
Q ss_pred cCCeEEEeCCCCcHHHHHHHHhC-CCeEEEEeCChHHHHHHHHHhHHh---cCCCCCcceEeeecCCCCCC-CCCCccEE
Q 026036 77 ERRRCIELGSGTGALAIFLRKAM-NLDITTSDYNDQEIEDNIAYNSTT---NGITPALPHIKHSWGDAFPI-PNPDWDLI 151 (244)
Q Consensus 77 ~~~~VLdlG~G~G~~~~~~a~~~-~~~v~~~D~~~~~l~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~-~~~~fD~I 151 (244)
++.+|||||||+|.++..+++.. ..+|+++|+++.++ +.++++... .....++..+..+..+.... ..++||+|
T Consensus 95 ~~~~VLdiG~G~G~~~~~l~~~~~~~~v~~vDid~~~i-~~a~~~~~~~~~~~~~~~v~~~~~D~~~~~~~~~~~~fDvI 173 (304)
T 3bwc_A 95 KPERVLIIGGGDGGVLREVLRHGTVEHCDLVDIDGEVM-EQSKQHFPQISRSLADPRATVRVGDGLAFVRQTPDNTYDVV 173 (304)
T ss_dssp SCCEEEEEECTTSHHHHHHHTCTTCCEEEEEESCHHHH-HHHHHHCHHHHGGGGCTTEEEEESCHHHHHHSSCTTCEEEE
T ss_pred CCCeEEEEcCCCCHHHHHHHhCCCCCEEEEEECCHHHH-HHHHHHhHHhhcccCCCcEEEEECcHHHHHHhccCCceeEE
Confidence 56799999999999999998764 56899999999987 777766521 11112333333222211111 35689999
Q ss_pred EEcccccCCcChHHH--HHHHHHHHHhcCCCCceEeecccccCCCCCCCCCCCeEEEeeeeccCccchhhHHHHHhhcCC
Q 026036 152 LASDILLYVKQYSNL--IKSLSVLLKSYKPKDSQVGHLTKNEQGEGTEGLPWPAFLMSWRRRIGKEDETIFFTSCENAGL 229 (244)
Q Consensus 152 ~~~~~l~~~~~~~~l--~~~l~~~~~~lk~gG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gf 229 (244)
++..+. .......+ .+.++.+.+.|||||++++..... .........+.+.+++.||
T Consensus 174 i~d~~~-~~~~~~~l~~~~~l~~~~~~LkpgG~lv~~~~~~--------------------~~~~~~~~~~~~~l~~~GF 232 (304)
T 3bwc_A 174 IIDTTD-PAGPASKLFGEAFYKDVLRILKPDGICCNQGESI--------------------WLDLELIEKMSRFIRETGF 232 (304)
T ss_dssp EEECC----------CCHHHHHHHHHHEEEEEEEEEEECCT--------------------TTCHHHHHHHHHHHHHHTC
T ss_pred EECCCC-ccccchhhhHHHHHHHHHHhcCCCcEEEEecCCc--------------------ccchHHHHHHHHHHHhCCC
Confidence 995544 22112222 488999999999999888752111 1111124677888999999
Q ss_pred eEEEe
Q 026036 230 EVKHL 234 (244)
Q Consensus 230 ~v~~~ 234 (244)
..+.+
T Consensus 233 ~~v~~ 237 (304)
T 3bwc_A 233 ASVQY 237 (304)
T ss_dssp SEEEE
T ss_pred CcEEE
Confidence 76654
|
| >2hnk_A SAM-dependent O-methyltransferase; modified rossman fold; HET: SAH; 2.30A {Leptospira interrogans} | Back alignment and structure |
|---|
Probab=99.41 E-value=1.8e-13 Score=109.77 Aligned_cols=107 Identities=18% Similarity=0.155 Sum_probs=78.3
Q ss_pred CcccCCeEEEeCCCCcHHHHHHHHhC--CCeEEEEeCChHHHHHHHHHhHHhcCCCCCcceEeeecCCCCC---------
Q 026036 74 EWIERRRCIELGSGTGALAIFLRKAM--NLDITTSDYNDQEIEDNIAYNSTTNGITPALPHIKHSWGDAFP--------- 142 (244)
Q Consensus 74 ~~~~~~~VLdlG~G~G~~~~~~a~~~--~~~v~~~D~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------- 142 (244)
...++.+|||+|||+|..+..+++.. +.+|+++|+++.++ +.++++...++...++..+..+..+.++
T Consensus 57 ~~~~~~~VLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~-~~a~~~~~~~g~~~~v~~~~~d~~~~~~~~~~~~~~~ 135 (239)
T 2hnk_A 57 KISGAKRIIEIGTFTGYSSLCFASALPEDGKILCCDVSEEWT-NVARKYWKENGLENKIFLKLGSALETLQVLIDSKSAP 135 (239)
T ss_dssp HHHTCSEEEEECCTTCHHHHHHHHHSCTTCEEEEEESCHHHH-HHHHHHHHHTTCGGGEEEEESCHHHHHHHHHHCSSCC
T ss_pred HhhCcCEEEEEeCCCCHHHHHHHHhCCCCCEEEEEECCHHHH-HHHHHHHHHcCCCCCEEEEECCHHHHHHHHHhhcccc
Confidence 34467899999999999999999886 57999999999987 7888887776664334433332211111
Q ss_pred -----CCC--CCccEEEEcccccCCcChHHHHHHHHHHHHhcCCCCceEeec
Q 026036 143 -----IPN--PDWDLILASDILLYVKQYSNLIKSLSVLLKSYKPKDSQVGHL 187 (244)
Q Consensus 143 -----~~~--~~fD~I~~~~~l~~~~~~~~l~~~l~~~~~~lk~gG~~~~~~ 187 (244)
+.. ++||+|++.... +.....++.+.+.|+|||++++..
T Consensus 136 ~~~~~f~~~~~~fD~I~~~~~~------~~~~~~l~~~~~~L~pgG~lv~~~ 181 (239)
T 2hnk_A 136 SWASDFAFGPSSIDLFFLDADK------ENYPNYYPLILKLLKPGGLLIADN 181 (239)
T ss_dssp GGGTTTCCSTTCEEEEEECSCG------GGHHHHHHHHHHHEEEEEEEEEEC
T ss_pred cccccccCCCCCcCEEEEeCCH------HHHHHHHHHHHHHcCCCeEEEEEc
Confidence 222 689999986432 344588999999999999988863
|
| >3a27_A TYW2, uncharacterized protein MJ1557; wybutosine modification, transferase; HET: SAM; 2.00A {Methanocaldococcus jannaschii} | Back alignment and structure |
|---|
Probab=99.41 E-value=5.2e-13 Score=109.20 Aligned_cols=101 Identities=16% Similarity=0.077 Sum_probs=78.4
Q ss_pred cccCCeEEEeCCCCcHHHHHHHHhC-CCeEEEEeCChHHHHHHHHHhHHhcCCCCCcceEeeecCCCCCCCCCCccEEEE
Q 026036 75 WIERRRCIELGSGTGALAIFLRKAM-NLDITTSDYNDQEIEDNIAYNSTTNGITPALPHIKHSWGDAFPIPNPDWDLILA 153 (244)
Q Consensus 75 ~~~~~~VLdlG~G~G~~~~~~a~~~-~~~v~~~D~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fD~I~~ 153 (244)
..++.+|||+|||+|.+++.+++.. ..+|+++|+++.++ +.+++|+..|++++ +..+..+..+. +. .++||+|++
T Consensus 117 ~~~~~~VLDlgcG~G~~s~~la~~~~~~~V~~vD~s~~av-~~a~~n~~~n~l~~-~~~~~~d~~~~-~~-~~~~D~Vi~ 192 (272)
T 3a27_A 117 SNENEVVVDMFAGIGYFTIPLAKYSKPKLVYAIEKNPTAY-HYLCENIKLNKLNN-VIPILADNRDV-EL-KDVADRVIM 192 (272)
T ss_dssp CCTTCEEEETTCTTTTTHHHHHHHTCCSEEEEEECCHHHH-HHHHHHHHHTTCSS-EEEEESCGGGC-CC-TTCEEEEEE
T ss_pred cCCCCEEEEecCcCCHHHHHHHHhCCCCEEEEEeCCHHHH-HHHHHHHHHcCCCC-EEEEECChHHc-Cc-cCCceEEEE
Confidence 4578899999999999999999885 56999999999997 89999999988742 33444333333 22 458999999
Q ss_pred cccccCCcChHHHHHHHHHHHHhcCCCCceEee
Q 026036 154 SDILLYVKQYSNLIKSLSVLLKSYKPKDSQVGH 186 (244)
Q Consensus 154 ~~~l~~~~~~~~l~~~l~~~~~~lk~gG~~~~~ 186 (244)
..+. ...+.+..+.+.|+|||.+++.
T Consensus 193 d~p~-------~~~~~l~~~~~~LkpgG~l~~s 218 (272)
T 3a27_A 193 GYVH-------KTHKFLDKTFEFLKDRGVIHYH 218 (272)
T ss_dssp CCCS-------SGGGGHHHHHHHEEEEEEEEEE
T ss_pred CCcc-------cHHHHHHHHHHHcCCCCEEEEE
Confidence 7653 2226778889999999988876
|
| >1i9g_A Hypothetical protein RV2118C; mtase, adoMet, crystal, structural genomics, protein structure initiative; HET: SAM; 1.98A {Mycobacterium tuberculosis} SCOP: c.66.1.13 | Back alignment and structure |
|---|
Probab=99.40 E-value=7.3e-13 Score=108.44 Aligned_cols=109 Identities=15% Similarity=0.191 Sum_probs=78.2
Q ss_pred HHhhccCcccCCeEEEeCCCCcHHHHHHHHhC--CCeEEEEeCChHHHHHHHHHhHHhc-C-CCCCcceEeeecCCCCCC
Q 026036 68 WLMHHREWIERRRCIELGSGTGALAIFLRKAM--NLDITTSDYNDQEIEDNIAYNSTTN-G-ITPALPHIKHSWGDAFPI 143 (244)
Q Consensus 68 ~~~~~~~~~~~~~VLdlG~G~G~~~~~~a~~~--~~~v~~~D~~~~~l~~~~~~~~~~~-~-~~~~~~~~~~~~~~~~~~ 143 (244)
.+.......++.+|||+|||+|.++..+++.. +.+|+++|+++.++ +.++++...+ + +..++..+..+..+ .+.
T Consensus 90 ~i~~~~~~~~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~vD~~~~~~-~~a~~~~~~~~g~~~~~v~~~~~d~~~-~~~ 167 (280)
T 1i9g_A 90 QIVHEGDIFPGARVLEAGAGSGALTLSLLRAVGPAGQVISYEQRADHA-EHARRNVSGCYGQPPDNWRLVVSDLAD-SEL 167 (280)
T ss_dssp HHHHHTTCCTTCEEEEECCTTSHHHHHHHHHHCTTSEEEEECSCHHHH-HHHHHHHHHHHTSCCTTEEEECSCGGG-CCC
T ss_pred HHHHHcCCCCCCEEEEEcccccHHHHHHHHHhCCCCEEEEEeCCHHHH-HHHHHHHHHhcCCCCCcEEEEECchHh-cCC
Confidence 44444456688899999999999999998853 67999999999987 7888887665 3 22333343333322 233
Q ss_pred CCCCccEEEEcccccCCcChHHHHHHHHHHHHhcCCCCceEee
Q 026036 144 PNPDWDLILASDILLYVKQYSNLIKSLSVLLKSYKPKDSQVGH 186 (244)
Q Consensus 144 ~~~~fD~I~~~~~l~~~~~~~~l~~~l~~~~~~lk~gG~~~~~ 186 (244)
.+++||+|+++.. .. ...++++.+.|+|||++++.
T Consensus 168 ~~~~~D~v~~~~~-----~~---~~~l~~~~~~L~pgG~l~~~ 202 (280)
T 1i9g_A 168 PDGSVDRAVLDML-----AP---WEVLDAVSRLLVAGGVLMVY 202 (280)
T ss_dssp CTTCEEEEEEESS-----CG---GGGHHHHHHHEEEEEEEEEE
T ss_pred CCCceeEEEECCc-----CH---HHHHHHHHHhCCCCCEEEEE
Confidence 4568999998322 12 27788899999999998876
|
| >3ckk_A TRNA (guanine-N(7)-)-methyltransferase; mettl1, S-adenosyl-L-methionine, tRNA Pro structural genomics, structural genomics consortium, SGC; HET: SAM; 1.55A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.40 E-value=9.2e-13 Score=105.42 Aligned_cols=109 Identities=10% Similarity=0.014 Sum_probs=73.1
Q ss_pred cCCeEEEeCCCCcHHHHHHHHhC-CCeEEEEeCChHHHHHHHHHhHHh------cCCCCCcceEeeecCCCCC--CCCCC
Q 026036 77 ERRRCIELGSGTGALAIFLRKAM-NLDITTSDYNDQEIEDNIAYNSTT------NGITPALPHIKHSWGDAFP--IPNPD 147 (244)
Q Consensus 77 ~~~~VLdlG~G~G~~~~~~a~~~-~~~v~~~D~~~~~l~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~--~~~~~ 147 (244)
++.+|||||||+|.+++.+|+.. ..+|+|+|+++.++ +.+++++.. .+. .++..+..+..+.++ +..++
T Consensus 46 ~~~~vLDiGcG~G~~~~~la~~~p~~~v~GiDis~~~l-~~A~~~~~~l~~~~~~~~-~nv~~~~~d~~~~l~~~~~~~~ 123 (235)
T 3ckk_A 46 AQVEFADIGCGYGGLLVELSPLFPDTLILGLEIRVKVS-DYVQDRIRALRAAPAGGF-QNIACLRSNAMKHLPNFFYKGQ 123 (235)
T ss_dssp CCEEEEEETCTTCHHHHHHGGGSTTSEEEEEESCHHHH-HHHHHHHHHHHHSTTCCC-TTEEEEECCTTTCHHHHCCTTC
T ss_pred CCCeEEEEccCCcHHHHHHHHHCCCCeEEEEECCHHHH-HHHHHHHHHHHHHHhcCC-CeEEEEECcHHHhhhhhCCCcC
Confidence 56699999999999999998876 57899999999987 666665442 222 233344333333233 45678
Q ss_pred ccEEEEcccccCCcC-hH----HHHHHHHHHHHhcCCCCceEeec
Q 026036 148 WDLILASDILLYVKQ-YS----NLIKSLSVLLKSYKPKDSQVGHL 187 (244)
Q Consensus 148 fD~I~~~~~l~~~~~-~~----~l~~~l~~~~~~lk~gG~~~~~~ 187 (244)
||.|+++.+-.+... .. .....++++.++|||||.+++.+
T Consensus 124 ~D~v~~~~~dp~~k~~h~krr~~~~~~l~~~~~~LkpGG~l~~~t 168 (235)
T 3ckk_A 124 LTKMFFLFPDPHFKRTKHKWRIISPTLLAEYAYVLRVGGLVYTIT 168 (235)
T ss_dssp EEEEEEESCC-----------CCCHHHHHHHHHHEEEEEEEEEEE
T ss_pred eeEEEEeCCCchhhhhhhhhhhhhHHHHHHHHHHCCCCCEEEEEe
Confidence 999987543211100 00 01368899999999999998873
|
| >3c0k_A UPF0064 protein YCCW; PUA domain, adoMet dependent methyltransferase fold; 2.00A {Escherichia coli K12} | Back alignment and structure |
|---|
Probab=99.39 E-value=5.9e-13 Score=114.53 Aligned_cols=110 Identities=11% Similarity=0.080 Sum_probs=82.0
Q ss_pred ccCCeEEEeCCCCcHHHHHHHHhCCCeEEEEeCChHHHHHHHHHhHHhcCC-CCCcceEeeecCCCCCC---CCCCccEE
Q 026036 76 IERRRCIELGSGTGALAIFLRKAMNLDITTSDYNDQEIEDNIAYNSTTNGI-TPALPHIKHSWGDAFPI---PNPDWDLI 151 (244)
Q Consensus 76 ~~~~~VLdlG~G~G~~~~~~a~~~~~~v~~~D~~~~~l~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~---~~~~fD~I 151 (244)
.++.+|||+|||+|.+++.++..+..+|+++|+++.++ +.+++|+..|++ +.++..+..+..+.++. ...+||+|
T Consensus 219 ~~~~~VLDl~cG~G~~sl~la~~g~~~V~~vD~s~~al-~~a~~n~~~ngl~~~~v~~~~~D~~~~~~~~~~~~~~fD~I 297 (396)
T 3c0k_A 219 VENKRVLNCFSYTGGFAVSALMGGCSQVVSVDTSQEAL-DIARQNVELNKLDLSKAEFVRDDVFKLLRTYRDRGEKFDVI 297 (396)
T ss_dssp CTTCEEEEESCTTCSHHHHHHHTTCSEEEEEESCHHHH-HHHHHHHHHTTCCGGGEEEEESCHHHHHHHHHHTTCCEEEE
T ss_pred hCCCeEEEeeccCCHHHHHHHHCCCCEEEEEECCHHHH-HHHHHHHHHcCCCccceEEEECCHHHHHHHHHhcCCCCCEE
Confidence 37789999999999999999987667999999999997 899999998887 43444444333221111 13579999
Q ss_pred EEcccccCC------cChHHHHHHHHHHHHhcCCCCceEee
Q 026036 152 LASDILLYV------KQYSNLIKSLSVLLKSYKPKDSQVGH 186 (244)
Q Consensus 152 ~~~~~l~~~------~~~~~l~~~l~~~~~~lk~gG~~~~~ 186 (244)
++..+.+.. .......+.+..+.+.|+|||.+++.
T Consensus 298 i~dpP~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~ 338 (396)
T 3c0k_A 298 VMDPPKFVENKSQLMGACRGYKDINMLAIQLLNEGGILLTF 338 (396)
T ss_dssp EECCSSTTTCSSSSSCCCTHHHHHHHHHHHTEEEEEEEEEE
T ss_pred EECCCCCCCChhHHHHHHHHHHHHHHHHHHhcCCCcEEEEE
Confidence 997665321 11245668889999999999987776
|
| >2yx1_A Hypothetical protein MJ0883; methyl transferase, tRNA modification enzyme, transferase; HET: SFG; 2.20A {Methanocaldococcus jannaschii} PDB: 2zzn_A* 3ay0_A* 2zzm_A* | Back alignment and structure |
|---|
Probab=99.39 E-value=1.6e-12 Score=109.51 Aligned_cols=97 Identities=13% Similarity=0.067 Sum_probs=76.2
Q ss_pred ccCCeEEEeCCCCcHHHHHHHHhCCCeEEEEeCChHHHHHHHHHhHHhcCCCCCcceEeeecCCCCCCCCCCccEEEEcc
Q 026036 76 IERRRCIELGSGTGALAIFLRKAMNLDITTSDYNDQEIEDNIAYNSTTNGITPALPHIKHSWGDAFPIPNPDWDLILASD 155 (244)
Q Consensus 76 ~~~~~VLdlG~G~G~~~~~~a~~~~~~v~~~D~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fD~I~~~~ 155 (244)
.++.+|||+|||+|.+++. ++ .+.+|+++|+|+.++ +.+++|+..|++..++..+..+..+. . ++||+|++..
T Consensus 194 ~~~~~VLDlg~G~G~~~l~-a~-~~~~V~~vD~s~~ai-~~a~~n~~~n~l~~~v~~~~~D~~~~---~-~~fD~Vi~dp 266 (336)
T 2yx1_A 194 SLNDVVVDMFAGVGPFSIA-CK-NAKKIYAIDINPHAI-ELLKKNIKLNKLEHKIIPILSDVREV---D-VKGNRVIMNL 266 (336)
T ss_dssp CTTCEEEETTCTTSHHHHH-TT-TSSEEEEEESCHHHH-HHHHHHHHHTTCTTTEEEEESCGGGC---C-CCEEEEEECC
T ss_pred CCCCEEEEccCccCHHHHh-cc-CCCEEEEEECCHHHH-HHHHHHHHHcCCCCcEEEEECChHHh---c-CCCcEEEECC
Confidence 3788999999999999999 77 588999999999997 89999999998855555554444332 2 7899999965
Q ss_pred cccCCcChHHHHHHHHHHHHhcCCCCceEee
Q 026036 156 ILLYVKQYSNLIKSLSVLLKSYKPKDSQVGH 186 (244)
Q Consensus 156 ~l~~~~~~~~l~~~l~~~~~~lk~gG~~~~~ 186 (244)
+. .. . +.+..+.+.|+|||.+++.
T Consensus 267 P~-~~---~---~~l~~~~~~L~~gG~l~~~ 290 (336)
T 2yx1_A 267 PK-FA---H---KFIDKALDIVEEGGVIHYY 290 (336)
T ss_dssp TT-TG---G---GGHHHHHHHEEEEEEEEEE
T ss_pred cH-hH---H---HHHHHHHHHcCCCCEEEEE
Confidence 43 22 1 6777889999999977664
|
| >3lcv_B Sisomicin-gentamicin resistance methylase SGM; antibiotic resistance, methyltransferase, transferase; HET: SAM; 2.00A {Micromonospora zionensis} PDB: 3lcu_A* | Back alignment and structure |
|---|
Probab=99.37 E-value=2.1e-12 Score=103.16 Aligned_cols=145 Identities=12% Similarity=0.062 Sum_probs=93.5
Q ss_pred cCCeEEEeCCCCcHHHHHHHHhC-CCeEEEEeCChHHHHHHHHHhHHhcCCCCCcceEeeecCCCC-CCCCCCccEEEEc
Q 026036 77 ERRRCIELGSGTGALAIFLRKAM-NLDITTSDYNDQEIEDNIAYNSTTNGITPALPHIKHSWGDAF-PIPNPDWDLILAS 154 (244)
Q Consensus 77 ~~~~VLdlG~G~G~~~~~~a~~~-~~~v~~~D~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~fD~I~~~ 154 (244)
...+|||||||+|.+++.++... ..+|+++|+++.++ +.++.|+..++.. ..+.+.|.. ..+.++||+++++
T Consensus 132 ~p~~VLDLGCG~GpLAl~~~~~~p~a~y~a~DId~~~l-e~a~~~l~~~g~~-----~~~~v~D~~~~~p~~~~DvaL~l 205 (281)
T 3lcv_B 132 RPNTLRDLACGLNPLAAPWMGLPAETVYIASDIDARLV-GFVDEALTRLNVP-----HRTNVADLLEDRLDEPADVTLLL 205 (281)
T ss_dssp CCSEEEETTCTTGGGCCTTTTCCTTCEEEEEESBHHHH-HHHHHHHHHTTCC-----EEEEECCTTTSCCCSCCSEEEET
T ss_pred CCceeeeeccCccHHHHHHHhhCCCCEEEEEeCCHHHH-HHHHHHHHhcCCC-----ceEEEeeecccCCCCCcchHHHH
Confidence 35699999999999999887763 77999999999998 9999999988873 233343432 3345689999999
Q ss_pred ccccCCcChHHHHHHHHHHHHhcCCCCceEeecccccCCCCCCCCCCCeEEEeeeeccCccchhhHHHHHhhcCCeEEEe
Q 026036 155 DILLYVKQYSNLIKSLSVLLKSYKPKDSQVGHLTKNEQGEGTEGLPWPAFLMSWRRRIGKEDETIFFTSCENAGLEVKHL 234 (244)
Q Consensus 155 ~~l~~~~~~~~l~~~l~~~~~~lk~gG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gf~v~~~ 234 (244)
.++ ++...+.- ...-++...|+++|.++-. .... +....+.+...-...|.+.+.+.|..+.++
T Consensus 206 kti-~~Le~q~k-g~g~~ll~aL~~~~vvVSf--p~ks------------l~Grs~gm~~~Y~~~~e~~~~~~g~~~~~~ 269 (281)
T 3lcv_B 206 KTL-PCLETQQR-GSGWEVIDIVNSPNIVVTF--PTKS------------LGQRSKGMFQNYSQSFESQARERSCRIQRL 269 (281)
T ss_dssp TCH-HHHHHHST-THHHHHHHHSSCSEEEEEE--ECC-------------------CHHHHHHHHHHHHHHHHTCCEEEE
T ss_pred HHH-HHhhhhhh-HHHHHHHHHhCCCCEEEec--cchh------------hcCCCcchhhHHHHHHHHHHHhcCCceeee
Confidence 998 33222211 2334899999999855433 0000 000111111100145666787788877766
Q ss_pred c---cEEEEEec
Q 026036 235 G---SRVYCIKL 243 (244)
Q Consensus 235 ~---~~~~~~~~ 243 (244)
. +..|.|++
T Consensus 270 ~~~nEl~y~i~k 281 (281)
T 3lcv_B 270 EIGNELIYVIQK 281 (281)
T ss_dssp EETTEEEEEEC-
T ss_pred eecCeeEEEecC
Confidence 3 66777754
|
| >1uwv_A 23S rRNA (uracil-5-)-methyltransferase RUMA; RNA modification, iron-sulfur cluster, RNA processing; 1.95A {Escherichia coli} SCOP: b.40.4.12 c.66.1.40 PDB: 2bh2_A* | Back alignment and structure |
|---|
Probab=99.37 E-value=7.2e-12 Score=108.95 Aligned_cols=116 Identities=10% Similarity=0.114 Sum_probs=84.1
Q ss_pred hHHHHHHHHhhccCcccCCeEEEeCCCCcHHHHHHHHhCCCeEEEEeCChHHHHHHHHHhHHhcCCCCCcceEeeecCCC
Q 026036 61 GTFSFAEWLMHHREWIERRRCIELGSGTGALAIFLRKAMNLDITTSDYNDQEIEDNIAYNSTTNGITPALPHIKHSWGDA 140 (244)
Q Consensus 61 ~~~~l~~~~~~~~~~~~~~~VLdlG~G~G~~~~~~a~~~~~~v~~~D~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 140 (244)
.+..+.+++.......++.+|||+|||+|.+++.++.. ..+|+|+|+++.++ +.+++|+..++++ ++..+..++.+.
T Consensus 270 ~~e~l~~~~~~~l~~~~~~~VLDlgcG~G~~~~~la~~-~~~V~gvD~s~~al-~~A~~n~~~~~~~-~v~f~~~d~~~~ 346 (433)
T 1uwv_A 270 VNQKMVARALEWLDVQPEDRVLDLFCGMGNFTLPLATQ-AASVVGVEGVPALV-EKGQQNARLNGLQ-NVTFYHENLEED 346 (433)
T ss_dssp HHHHHHHHHHHHHTCCTTCEEEEESCTTTTTHHHHHTT-SSEEEEEESCHHHH-HHHHHHHHHTTCC-SEEEEECCTTSC
T ss_pred HHHHHHHHHHHhhcCCCCCEEEECCCCCCHHHHHHHhh-CCEEEEEeCCHHHH-HHHHHHHHHcCCC-ceEEEECCHHHH
Confidence 46677777776665567789999999999999999887 78999999999997 8899999888874 455555555443
Q ss_pred CC---CCCCCccEEEEcccccCCcChHHHHHHHHHHHHhcCCCCceEee
Q 026036 141 FP---IPNPDWDLILASDILLYVKQYSNLIKSLSVLLKSYKPKDSQVGH 186 (244)
Q Consensus 141 ~~---~~~~~fD~I~~~~~l~~~~~~~~l~~~l~~~~~~lk~gG~~~~~ 186 (244)
++ +..++||+|+++.+. .. .. ..++.+.+ ++|++.++++
T Consensus 347 l~~~~~~~~~fD~Vv~dPPr-~g--~~---~~~~~l~~-~~p~~ivyvs 388 (433)
T 1uwv_A 347 VTKQPWAKNGFDKVLLDPAR-AG--AA---GVMQQIIK-LEPIRIVYVS 388 (433)
T ss_dssp CSSSGGGTTCCSEEEECCCT-TC--CH---HHHHHHHH-HCCSEEEEEE
T ss_pred hhhhhhhcCCCCEEEECCCC-cc--HH---HHHHHHHh-cCCCeEEEEE
Confidence 32 334589999996664 32 22 34444443 6787765554
|
| >2qe6_A Uncharacterized protein TFU_2867; putative methyltransferase, structural genomics, joint cente structural genomics, JCSG; HET: NEP SAM; 1.95A {Thermobifida fusca} | Back alignment and structure |
|---|
Probab=99.37 E-value=1.1e-11 Score=101.45 Aligned_cols=108 Identities=11% Similarity=0.067 Sum_probs=77.2
Q ss_pred CCeEEEeCCCC---cHHHHHHHHhC-CCeEEEEeCChHHHHHHHHHhHHhcCCCCCcceEeeecCCCC----------CC
Q 026036 78 RRRCIELGSGT---GALAIFLRKAM-NLDITTSDYNDQEIEDNIAYNSTTNGITPALPHIKHSWGDAF----------PI 143 (244)
Q Consensus 78 ~~~VLdlG~G~---G~~~~~~a~~~-~~~v~~~D~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~----------~~ 143 (244)
..+|||||||+ |.+...+++.. +.+|+++|+|+.|+ +.++++...+ .++..+..+..+.. .+
T Consensus 78 ~~~vLDlGcG~pt~G~~~~~~~~~~p~~~v~~vD~sp~~l-~~Ar~~~~~~---~~v~~~~~D~~~~~~~~~~~~~~~~~ 153 (274)
T 2qe6_A 78 ISQFLDLGSGLPTVQNTHEVAQSVNPDARVVYVDIDPMVL-THGRALLAKD---PNTAVFTADVRDPEYILNHPDVRRMI 153 (274)
T ss_dssp CCEEEEETCCSCCSSCHHHHHHHHCTTCEEEEEESSHHHH-HHHHHHHTTC---TTEEEEECCTTCHHHHHHSHHHHHHC
T ss_pred CCEEEEECCCCCCCChHHHHHHHhCCCCEEEEEECChHHH-HHHHHhcCCC---CCeEEEEeeCCCchhhhccchhhccC
Confidence 46999999999 98876666554 67999999999997 7777765321 23444444433210 01
Q ss_pred CCCCccEEEEcccccCCcChHHHHHHHHHHHHhcCCCCceEeecccc
Q 026036 144 PNPDWDLILASDILLYVKQYSNLIKSLSVLLKSYKPKDSQVGHLTKN 190 (244)
Q Consensus 144 ~~~~fD~I~~~~~l~~~~~~~~l~~~l~~~~~~lk~gG~~~~~~~~~ 190 (244)
...+||+|+++.++++... .....+++++++.|+|||++++.....
T Consensus 154 d~~~~d~v~~~~vlh~~~d-~~~~~~l~~~~~~L~pGG~l~i~~~~~ 199 (274)
T 2qe6_A 154 DFSRPAAIMLVGMLHYLSP-DVVDRVVGAYRDALAPGSYLFMTSLVD 199 (274)
T ss_dssp CTTSCCEEEETTTGGGSCT-TTHHHHHHHHHHHSCTTCEEEEEEEBC
T ss_pred CCCCCEEEEEechhhhCCc-HHHHHHHHHHHHhCCCCcEEEEEEecC
Confidence 2247999999999954433 256699999999999999999885443
|
| >1fp2_A Isoflavone O-methyltransferase; protein-product complex; HET: SAH HMO; 1.40A {Medicago sativa} SCOP: a.4.5.29 c.66.1.12 PDB: 1fpx_A* 2qyo_A* | Back alignment and structure |
|---|
Probab=99.37 E-value=5.6e-12 Score=106.75 Aligned_cols=146 Identities=14% Similarity=0.132 Sum_probs=93.4
Q ss_pred cccCCeEEEeCCCCcHHHHHHHHhC-CCeEEEEeCChHHHHHHHHHhHHhcCCCCCcceEeeecCCCCCCCCCCccEEEE
Q 026036 75 WIERRRCIELGSGTGALAIFLRKAM-NLDITTSDYNDQEIEDNIAYNSTTNGITPALPHIKHSWGDAFPIPNPDWDLILA 153 (244)
Q Consensus 75 ~~~~~~VLdlG~G~G~~~~~~a~~~-~~~v~~~D~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fD~I~~ 153 (244)
..++.+|||||||+|..+..+++.. +.+++++|+ +.++ +.+++ . ..+..+..+..+ +. +.||+|++
T Consensus 186 ~~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~-~~a~~------~-~~v~~~~~d~~~--~~--p~~D~v~~ 252 (352)
T 1fp2_A 186 FDGLESIVDVGGGTGTTAKIICETFPKLKCIVFDR-PQVV-ENLSG------S-NNLTYVGGDMFT--SI--PNADAVLL 252 (352)
T ss_dssp HTTCSEEEEETCTTSHHHHHHHHHCTTCEEEEEEC-HHHH-TTCCC------B-TTEEEEECCTTT--CC--CCCSEEEE
T ss_pred cccCceEEEeCCCccHHHHHHHHHCCCCeEEEeeC-HHHH-hhccc------C-CCcEEEeccccC--CC--CCccEEEe
Confidence 3456799999999999999998876 678999999 8776 43322 1 113333333322 22 24999999
Q ss_pred cccccCCcChHHHHHHHHHHHHhcCC---CCceEeecccccCCCCC-----CCCCCCeEEEeeeeccCccchhhHHHHHh
Q 026036 154 SDILLYVKQYSNLIKSLSVLLKSYKP---KDSQVGHLTKNEQGEGT-----EGLPWPAFLMSWRRRIGKEDETIFFTSCE 225 (244)
Q Consensus 154 ~~~l~~~~~~~~l~~~l~~~~~~lk~---gG~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 225 (244)
..++++ ...+...+.++++++.||| ||++++........... ........+.....+ ..+.+++.++++
T Consensus 253 ~~~lh~-~~d~~~~~~l~~~~~~L~p~~~gG~l~i~e~~~~~~~~~~~~~~~~~~~d~~~~~~~g~--~~t~~e~~~ll~ 329 (352)
T 1fp2_A 253 KYILHN-WTDKDCLRILKKCKEAVTNDGKRGKVTIIDMVIDKKKDENQVTQIKLLMDVNMACLNGK--ERNEEEWKKLFI 329 (352)
T ss_dssp ESCGGG-SCHHHHHHHHHHHHHHHSGGGCCCEEEEEECEECTTTSCHHHHHHHHHHHHHGGGGTCC--CEEHHHHHHHHH
T ss_pred ehhhcc-CCHHHHHHHHHHHHHhCCCCCCCcEEEEEEeecCCCCCccchhhhHhhccHHHHhccCC--CCCHHHHHHHHH
Confidence 999944 3445566999999999999 99998885443322110 000000000000011 123578999999
Q ss_pred hcCCeEEEecc
Q 026036 226 NAGLEVKHLGS 236 (244)
Q Consensus 226 ~~Gf~v~~~~~ 236 (244)
++||+++++..
T Consensus 330 ~aGf~~~~~~~ 340 (352)
T 1fp2_A 330 EAGFQHYKISP 340 (352)
T ss_dssp HTTCCEEEEEE
T ss_pred HCCCCeeEEEe
Confidence 99999887654
|
| >1p91_A Ribosomal RNA large subunit methyltransferase A; RLMA, RRMA, 23S rRNA, NESG, structural genomics, PSI, protein structure initiative; HET: SAM; 2.80A {Escherichia coli} SCOP: c.66.1.33 | Back alignment and structure |
|---|
Probab=99.37 E-value=1.8e-12 Score=105.50 Aligned_cols=111 Identities=14% Similarity=0.107 Sum_probs=78.1
Q ss_pred hHHHHHHHHhhccCcccCCeEEEeCCCCcHHHHHHHHhC-CCeEEEEeCChHHHHHHHHHhHHhcCCCCCcceEeeecCC
Q 026036 61 GTFSFAEWLMHHREWIERRRCIELGSGTGALAIFLRKAM-NLDITTSDYNDQEIEDNIAYNSTTNGITPALPHIKHSWGD 139 (244)
Q Consensus 61 ~~~~l~~~~~~~~~~~~~~~VLdlG~G~G~~~~~~a~~~-~~~v~~~D~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 139 (244)
-...+.+++..... .++.+|||+|||+|.++..+++.. +.+|+++|+++.++ +.++++.. ++..+..+. .
T Consensus 70 ~~~~~~~~~~~~~~-~~~~~vLdiG~G~G~~~~~l~~~~~~~~v~~vD~s~~~~-~~a~~~~~------~~~~~~~d~-~ 140 (269)
T 1p91_A 70 LRDAIVAQLRERLD-DKATAVLDIGCGEGYYTHAFADALPEITTFGLDVSKVAI-KAAAKRYP------QVTFCVASS-H 140 (269)
T ss_dssp HHHHHHHHHHHHSC-TTCCEEEEETCTTSTTHHHHHHTCTTSEEEEEESCHHHH-HHHHHHCT------TSEEEECCT-T
T ss_pred HHHHHHHHHHHhcC-CCCCEEEEECCCCCHHHHHHHHhCCCCeEEEEeCCHHHH-HHHHHhCC------CcEEEEcch-h
Confidence 34445555444321 367899999999999999998875 67999999999987 66655431 122333333 2
Q ss_pred CCCCCCCCccEEEEcccccCCcChHHHHHHHHHHHHhcCCCCceEeecccc
Q 026036 140 AFPIPNPDWDLILASDILLYVKQYSNLIKSLSVLLKSYKPKDSQVGHLTKN 190 (244)
Q Consensus 140 ~~~~~~~~fD~I~~~~~l~~~~~~~~l~~~l~~~~~~lk~gG~~~~~~~~~ 190 (244)
.+++.+++||+|+++++. ..++++.++|||||++++.++..
T Consensus 141 ~~~~~~~~fD~v~~~~~~----------~~l~~~~~~L~pgG~l~~~~~~~ 181 (269)
T 1p91_A 141 RLPFSDTSMDAIIRIYAP----------CKAEELARVVKPGGWVITATPGP 181 (269)
T ss_dssp SCSBCTTCEEEEEEESCC----------CCHHHHHHHEEEEEEEEEEEECT
T ss_pred hCCCCCCceeEEEEeCCh----------hhHHHHHHhcCCCcEEEEEEcCH
Confidence 345556789999987653 24678999999999999886554
|
| >2vdv_E TRNA (guanine-N(7)-)-methyltransferase; S-adenosyl-L-methionine, phosphorylation, M7G, spout MT, tRNA processing; HET: SAM; 2.30A {Saccharomyces cerevisiae} PDB: 2vdu_E | Back alignment and structure |
|---|
Probab=99.36 E-value=3.5e-12 Score=102.64 Aligned_cols=109 Identities=15% Similarity=0.033 Sum_probs=74.8
Q ss_pred ccCCeEEEeCCCCcHHHHHHHHhC-CCeEEEEeCChHHHHHHHHHhHHhc--------CCCCCcceEeeecCCCCC--CC
Q 026036 76 IERRRCIELGSGTGALAIFLRKAM-NLDITTSDYNDQEIEDNIAYNSTTN--------GITPALPHIKHSWGDAFP--IP 144 (244)
Q Consensus 76 ~~~~~VLdlG~G~G~~~~~~a~~~-~~~v~~~D~~~~~l~~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~--~~ 144 (244)
.++.+|||+|||+|.+++.++..+ ..+|+|+|+++.++ +.+++++..+ ++ .++..+..+..+.++ +.
T Consensus 48 ~~~~~vLDiGcG~G~~~~~la~~~~~~~v~gvD~s~~~l-~~a~~~~~~~~~~~~~~~~~-~nv~~~~~D~~~~l~~~~~ 125 (246)
T 2vdv_E 48 TKKVTIADIGCGFGGLMIDLSPAFPEDLILGMEIRVQVT-NYVEDRIIALRNNTASKHGF-QNINVLRGNAMKFLPNFFE 125 (246)
T ss_dssp SCCEEEEEETCTTSHHHHHHHHHSTTSEEEEEESCHHHH-HHHHHHHHHHHHTC-CCSTT-TTEEEEECCTTSCGGGTSC
T ss_pred CCCCEEEEEcCCCCHHHHHHHHhCCCCCEEEEEcCHHHH-HHHHHHHHHHhhccccccCC-CcEEEEeccHHHHHHHhcc
Confidence 367799999999999999999887 46899999999987 7777776654 44 234444444433333 44
Q ss_pred CCCccEEEEcccccCCcChH-----HHHHHHHHHHHhcCCCCceEee
Q 026036 145 NPDWDLILASDILLYVKQYS-----NLIKSLSVLLKSYKPKDSQVGH 186 (244)
Q Consensus 145 ~~~fD~I~~~~~l~~~~~~~-----~l~~~l~~~~~~lk~gG~~~~~ 186 (244)
.+++|.|+...+--...... .....++++.++|+|||.+++.
T Consensus 126 ~~~~d~v~~~~p~p~~k~~~~~~r~~~~~~l~~~~~~LkpgG~l~~~ 172 (246)
T 2vdv_E 126 KGQLSKMFFCFPDPHFKQRKHKARIITNTLLSEYAYVLKEGGVVYTI 172 (246)
T ss_dssp TTCEEEEEEESCCCC------CSSCCCHHHHHHHHHHEEEEEEEEEE
T ss_pred ccccCEEEEECCCcccccchhHHhhccHHHHHHHHHHcCCCCEEEEE
Confidence 56899998653210000000 0037889999999999998886
|
| >3c3y_A Pfomt, O-methyltransferase; plant secondary metabolism; HET: SAH; 1.37A {Mesembryanthemum crystallinum} | Back alignment and structure |
|---|
Probab=99.36 E-value=5.1e-13 Score=107.03 Aligned_cols=104 Identities=17% Similarity=0.138 Sum_probs=77.0
Q ss_pred ccCCeEEEeCCCCcHHHHHHHHhC--CCeEEEEeCChHHHHHHHHHhHHhcCCCCCcceEeeecCCCCCC------CCCC
Q 026036 76 IERRRCIELGSGTGALAIFLRKAM--NLDITTSDYNDQEIEDNIAYNSTTNGITPALPHIKHSWGDAFPI------PNPD 147 (244)
Q Consensus 76 ~~~~~VLdlG~G~G~~~~~~a~~~--~~~v~~~D~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~ 147 (244)
.++.+|||||||+|..++.+++.. +.+|+++|+++.++ +.++++....++..++..+..+..+.++. ..++
T Consensus 69 ~~~~~VLeiG~G~G~~~~~la~~~~~~~~v~~iD~~~~~~-~~a~~~~~~~g~~~~i~~~~gda~~~l~~l~~~~~~~~~ 147 (237)
T 3c3y_A 69 VNAKKTIEVGVFTGYSLLLTALSIPDDGKITAIDFDREAY-EIGLPFIRKAGVEHKINFIESDAMLALDNLLQGQESEGS 147 (237)
T ss_dssp TTCCEEEEECCTTSHHHHHHHHHSCTTCEEEEEESCHHHH-HHHHHHHHHTTCGGGEEEEESCHHHHHHHHHHSTTCTTC
T ss_pred hCCCEEEEeCCCCCHHHHHHHHhCCCCCEEEEEECCHHHH-HHHHHHHHHcCCCCcEEEEEcCHHHHHHHHHhccCCCCC
Confidence 356799999999999999998875 57999999999987 88888888777644444443332221111 1468
Q ss_pred ccEEEEcccccCCcChHHHHHHHHHHHHhcCCCCceEee
Q 026036 148 WDLILASDILLYVKQYSNLIKSLSVLLKSYKPKDSQVGH 186 (244)
Q Consensus 148 fD~I~~~~~l~~~~~~~~l~~~l~~~~~~lk~gG~~~~~ 186 (244)
||+|++... .......++.+.+.|+|||.+++.
T Consensus 148 fD~I~~d~~------~~~~~~~l~~~~~~L~pGG~lv~d 180 (237)
T 3c3y_A 148 YDFGFVDAD------KPNYIKYHERLMKLVKVGGIVAYD 180 (237)
T ss_dssp EEEEEECSC------GGGHHHHHHHHHHHEEEEEEEEEE
T ss_pred cCEEEECCc------hHHHHHHHHHHHHhcCCCeEEEEe
Confidence 999998432 234458889999999999988775
|
| >2avd_A Catechol-O-methyltransferase; structural genomics, structural genomics consortium, SGC; HET: SAM; 1.70A {Homo sapiens} SCOP: c.66.1.1 | Back alignment and structure |
|---|
Probab=99.36 E-value=5.7e-13 Score=105.84 Aligned_cols=105 Identities=13% Similarity=0.061 Sum_probs=77.2
Q ss_pred cccCCeEEEeCCCCcHHHHHHHHhC--CCeEEEEeCChHHHHHHHHHhHHhcCCCCCcceEeeecCCCCCC---C--CCC
Q 026036 75 WIERRRCIELGSGTGALAIFLRKAM--NLDITTSDYNDQEIEDNIAYNSTTNGITPALPHIKHSWGDAFPI---P--NPD 147 (244)
Q Consensus 75 ~~~~~~VLdlG~G~G~~~~~~a~~~--~~~v~~~D~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~--~~~ 147 (244)
..++.+|||+|||+|..++.+++.. +.+|+++|+++.++ +.++++...++...++..+..+..+.++. . .++
T Consensus 67 ~~~~~~vLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~-~~a~~~~~~~g~~~~i~~~~~d~~~~~~~~~~~~~~~~ 145 (229)
T 2avd_A 67 LIQAKKALDLGTFTGYSALALALALPADGRVVTCEVDAQPP-ELGRPLWRQAEAEHKIDLRLKPALETLDELLAAGEAGT 145 (229)
T ss_dssp HTTCCEEEEECCTTSHHHHHHHTTSCTTCEEEEEESCSHHH-HHHHHHHHHTTCTTTEEEEESCHHHHHHHHHHTTCTTC
T ss_pred hcCCCEEEEEcCCccHHHHHHHHhCCCCCEEEEEECCHHHH-HHHHHHHHHCCCCCeEEEEEcCHHHHHHHHHhcCCCCC
Confidence 3467899999999999999998764 57999999999987 88888888777654444443332211111 1 167
Q ss_pred ccEEEEcccccCCcChHHHHHHHHHHHHhcCCCCceEee
Q 026036 148 WDLILASDILLYVKQYSNLIKSLSVLLKSYKPKDSQVGH 186 (244)
Q Consensus 148 fD~I~~~~~l~~~~~~~~l~~~l~~~~~~lk~gG~~~~~ 186 (244)
||+|++.... ......++.+.+.|+|||.+++.
T Consensus 146 ~D~v~~d~~~------~~~~~~l~~~~~~L~pgG~lv~~ 178 (229)
T 2avd_A 146 FDVAVVDADK------ENCSAYYERCLQLLRPGGILAVL 178 (229)
T ss_dssp EEEEEECSCS------TTHHHHHHHHHHHEEEEEEEEEE
T ss_pred ccEEEECCCH------HHHHHHHHHHHHHcCCCeEEEEE
Confidence 9999985442 23347889999999999988875
|
| >3ajd_A Putative methyltransferase MJ0026; tRNA, M5C, rossmann fold, structural genomics, riken structu genomics/proteomics initiative; 1.27A {Methanocaldococcus jannaschii} PDB: 3a4t_A | Back alignment and structure |
|---|
Probab=99.35 E-value=2.3e-12 Score=105.46 Aligned_cols=110 Identities=12% Similarity=0.016 Sum_probs=77.2
Q ss_pred cccCCeEEEeCCCCcHHHHHHHHhC--CCeEEEEeCChHHHHHHHHHhHHhcCCCCCcceEeeecCCCCCC---CCCCcc
Q 026036 75 WIERRRCIELGSGTGALAIFLRKAM--NLDITTSDYNDQEIEDNIAYNSTTNGITPALPHIKHSWGDAFPI---PNPDWD 149 (244)
Q Consensus 75 ~~~~~~VLdlG~G~G~~~~~~a~~~--~~~v~~~D~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~fD 149 (244)
..++.+|||+|||+|..+..++... ..+|+++|+++.++ +.+++|+..++++ ++..+..+..+.... ..++||
T Consensus 81 ~~~g~~VLDlgaG~G~~t~~la~~~~~~~~v~avD~~~~~l-~~~~~~~~~~g~~-~v~~~~~D~~~~~~~~~~~~~~fD 158 (274)
T 3ajd_A 81 PREDDFILDMCAAPGGKTTHLAQLMKNKGTIVAVEISKTRT-KALKSNINRMGVL-NTIIINADMRKYKDYLLKNEIFFD 158 (274)
T ss_dssp CCTTCEEEETTCTTCHHHHHHHHHTTTCSEEEEEESCHHHH-HHHHHHHHHTTCC-SEEEEESCHHHHHHHHHHTTCCEE
T ss_pred CCCcCEEEEeCCCccHHHHHHHHHcCCCCEEEEECCCHHHH-HHHHHHHHHhCCC-cEEEEeCChHhcchhhhhccccCC
Confidence 4578899999999999999998764 37999999999987 7888888887763 333333222111110 145799
Q ss_pred EEEEcccccCCcC----------------hHHHHHHHHHHHHhcCCCCceEeec
Q 026036 150 LILASDILLYVKQ----------------YSNLIKSLSVLLKSYKPKDSQVGHL 187 (244)
Q Consensus 150 ~I~~~~~l~~~~~----------------~~~l~~~l~~~~~~lk~gG~~~~~~ 187 (244)
+|++..+. .... .....+.++++.+.|||||++++++
T Consensus 159 ~Vl~d~Pc-s~~g~~~~~p~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~lv~st 211 (274)
T 3ajd_A 159 KILLDAPC-SGNIIKDKNRNVSEEDIKYCSLRQKELIDIGIDLLKKDGELVYST 211 (274)
T ss_dssp EEEEEECC-C------------HHHHTGGGTCHHHHHHHHHHHEEEEEEEEEEE
T ss_pred EEEEcCCC-CCCcccccCCCCCHHHHHHHHHHHHHHHHHHHHhCCCCCEEEEEE
Confidence 99986443 2110 0223578899999999999988763
|
| >1wxx_A TT1595, hypothetical protein TTHA1280; thermus thermophillus, methyltransferase, adoMet, structural genomics; 1.80A {Thermus thermophilus} SCOP: b.122.1.9 c.66.1.51 PDB: 1wxw_A 2cww_A* | Back alignment and structure |
|---|
Probab=99.35 E-value=1.5e-12 Score=111.43 Aligned_cols=107 Identities=14% Similarity=0.141 Sum_probs=79.7
Q ss_pred cCCeEEEeCCCCcHHHHHHHHhCCCeEEEEeCChHHHHHHHHHhHHhcCCCCCcceEeeecCCCCCC---CCCCccEEEE
Q 026036 77 ERRRCIELGSGTGALAIFLRKAMNLDITTSDYNDQEIEDNIAYNSTTNGITPALPHIKHSWGDAFPI---PNPDWDLILA 153 (244)
Q Consensus 77 ~~~~VLdlG~G~G~~~~~~a~~~~~~v~~~D~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~fD~I~~ 153 (244)
++.+|||+|||+|.+++.++.. +.+|+++|+++.++ +.+++|+..|++.+ +..+..+..+.++. ...+||+|++
T Consensus 209 ~~~~VLDlg~G~G~~~~~la~~-~~~v~~vD~s~~~~-~~a~~n~~~n~~~~-~~~~~~d~~~~~~~~~~~~~~fD~Ii~ 285 (382)
T 1wxx_A 209 RGERALDVFSYAGGFALHLALG-FREVVAVDSSAEAL-RRAEENARLNGLGN-VRVLEANAFDLLRRLEKEGERFDLVVL 285 (382)
T ss_dssp CEEEEEEETCTTTHHHHHHHHH-EEEEEEEESCHHHH-HHHHHHHHHTTCTT-EEEEESCHHHHHHHHHHTTCCEEEEEE
T ss_pred CCCeEEEeeeccCHHHHHHHHh-CCEEEEEECCHHHH-HHHHHHHHHcCCCC-ceEEECCHHHHHHHHHhcCCCeeEEEE
Confidence 6789999999999999999988 78999999999997 89999999998743 34433332221111 1458999999
Q ss_pred cccccCCcC------hHHHHHHHHHHHHhcCCCCceEee
Q 026036 154 SDILLYVKQ------YSNLIKSLSVLLKSYKPKDSQVGH 186 (244)
Q Consensus 154 ~~~l~~~~~------~~~l~~~l~~~~~~lk~gG~~~~~ 186 (244)
..+.|.... .....+.+..+.+.|+|||.+++.
T Consensus 286 dpP~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~ 324 (382)
T 1wxx_A 286 DPPAFAKGKKDVERAYRAYKEVNLRAIKLLKEGGILATA 324 (382)
T ss_dssp CCCCSCCSTTSHHHHHHHHHHHHHHHHHTEEEEEEEEEE
T ss_pred CCCCCCCChhHHHHHHHHHHHHHHHHHHhcCCCCEEEEE
Confidence 666532211 134557888999999999987776
|
| >2jjq_A Uncharacterized RNA methyltransferase pyrab10780; metal-binding, tRNA methyltransferase, S-adenosyl-L-methionine, iron, 4Fe-4S, iron-sulfur; HET: SAH; 1.8A {Pyrococcus abyssi} PDB: 2vs1_A* | Back alignment and structure |
|---|
Probab=99.35 E-value=1.5e-11 Score=106.52 Aligned_cols=110 Identities=15% Similarity=0.171 Sum_probs=78.9
Q ss_pred hHHHHHHHHhhccCcccCCeEEEeCCCCcHHHHHHHHhCCCeEEEEeCChHHHHHHHHHhHHhcCCCCCcceEeeecCCC
Q 026036 61 GTFSFAEWLMHHREWIERRRCIELGSGTGALAIFLRKAMNLDITTSDYNDQEIEDNIAYNSTTNGITPALPHIKHSWGDA 140 (244)
Q Consensus 61 ~~~~l~~~~~~~~~~~~~~~VLdlG~G~G~~~~~~a~~~~~~v~~~D~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 140 (244)
.+..+.+++.. ..++.+|||+|||+|.+++.+++. +.+|+++|+++.++ +.+++|+..|++. +..+..+..+
T Consensus 277 ~~e~l~~~~~~---~~~~~~VLDlgcG~G~~sl~la~~-~~~V~gvD~s~~ai-~~A~~n~~~ngl~--v~~~~~d~~~- 348 (425)
T 2jjq_A 277 QAVNLVRKVSE---LVEGEKILDMYSGVGTFGIYLAKR-GFNVKGFDSNEFAI-EMARRNVEINNVD--AEFEVASDRE- 348 (425)
T ss_dssp HHHHHHHHHHH---HCCSSEEEEETCTTTHHHHHHHHT-TCEEEEEESCHHHH-HHHHHHHHHHTCC--EEEEECCTTT-
T ss_pred HHHHHHHHhhc---cCCCCEEEEeeccchHHHHHHHHc-CCEEEEEECCHHHH-HHHHHHHHHcCCc--EEEEECChHH-
Confidence 45566676665 457789999999999999999876 77999999999998 8899999888873 3444333333
Q ss_pred CCCCCCCccEEEEcccccCCcChHHHHHHHHHHHHhcCCCCceEee
Q 026036 141 FPIPNPDWDLILASDILLYVKQYSNLIKSLSVLLKSYKPKDSQVGH 186 (244)
Q Consensus 141 ~~~~~~~fD~I~~~~~l~~~~~~~~l~~~l~~~~~~lk~gG~~~~~ 186 (244)
....+||+|++..+- .. ... ..++.+. .++|+|.++++
T Consensus 349 --~~~~~fD~Vv~dPPr-~g-~~~---~~~~~l~-~l~p~givyvs 386 (425)
T 2jjq_A 349 --VSVKGFDTVIVDPPR-AG-LHP---RLVKRLN-REKPGVIVYVS 386 (425)
T ss_dssp --CCCTTCSEEEECCCT-TC-SCH---HHHHHHH-HHCCSEEEEEE
T ss_pred --cCccCCCEEEEcCCc-cc-hHH---HHHHHHH-hcCCCcEEEEE
Confidence 222389999996653 22 122 3444443 48999987776
|
| >2pbf_A Protein-L-isoaspartate O-methyltransferase beta-A methyltransferase; protein repair, isoaspartyl formation, P. falciparum; HET: SAH; 2.00A {Plasmodium falciparum} | Back alignment and structure |
|---|
Probab=99.35 E-value=2.1e-12 Score=102.48 Aligned_cols=105 Identities=13% Similarity=0.067 Sum_probs=75.2
Q ss_pred CcccCCeEEEeCCCCcHHHHHHHHhCC------CeEEEEeCChHHHHHHHHHhHHhcCC----CCCcceEeeecCCCCC-
Q 026036 74 EWIERRRCIELGSGTGALAIFLRKAMN------LDITTSDYNDQEIEDNIAYNSTTNGI----TPALPHIKHSWGDAFP- 142 (244)
Q Consensus 74 ~~~~~~~VLdlG~G~G~~~~~~a~~~~------~~v~~~D~~~~~l~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~- 142 (244)
...++.+|||+|||+|..+..+++..+ .+|+++|+++.++ +.++++...++. ..++..+..+..+..+
T Consensus 77 ~~~~~~~VLdiG~G~G~~~~~la~~~~~~~~~~~~v~~vD~~~~~~-~~a~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~ 155 (227)
T 2pbf_A 77 VLKPGSRAIDVGSGSGYLTVCMAIKMNVLENKNSYVIGLERVKDLV-NFSLENIKRDKPELLKIDNFKIIHKNIYQVNEE 155 (227)
T ss_dssp TSCTTCEEEEESCTTSHHHHHHHHHTTTTTCTTCEEEEEESCHHHH-HHHHHHHHHHCGGGGSSTTEEEEECCGGGCCHH
T ss_pred hCCCCCEEEEECCCCCHHHHHHHHHhcccCCCCCEEEEEeCCHHHH-HHHHHHHHHcCccccccCCEEEEECChHhcccc
Confidence 345788999999999999999988754 5999999999987 788887766552 1233333333322210
Q ss_pred --CCCCCccEEEEcccccCCcChHHHHHHHHHHHHhcCCCCceEeecc
Q 026036 143 --IPNPDWDLILASDILLYVKQYSNLIKSLSVLLKSYKPKDSQVGHLT 188 (244)
Q Consensus 143 --~~~~~fD~I~~~~~l~~~~~~~~l~~~l~~~~~~lk~gG~~~~~~~ 188 (244)
...++||+|++..++ .+ .++.+.+.|||||++++.+.
T Consensus 156 ~~~~~~~fD~I~~~~~~-~~--------~~~~~~~~LkpgG~lv~~~~ 194 (227)
T 2pbf_A 156 EKKELGLFDAIHVGASA-SE--------LPEILVDLLAENGKLIIPIE 194 (227)
T ss_dssp HHHHHCCEEEEEECSBB-SS--------CCHHHHHHEEEEEEEEEEEE
T ss_pred cCccCCCcCEEEECCch-HH--------HHHHHHHhcCCCcEEEEEEc
Confidence 224579999998887 32 23568899999999888744
|
| >2as0_A Hypothetical protein PH1915; RNA methyltransferase, structural genomics, PSI, protein structure initiative; 1.80A {Pyrococcus horikoshii} SCOP: b.122.1.9 c.66.1.51 | Back alignment and structure |
|---|
Probab=99.35 E-value=7.1e-13 Score=114.07 Aligned_cols=108 Identities=16% Similarity=0.117 Sum_probs=80.7
Q ss_pred cCCeEEEeCCCCcHHHHHHHHhCCCeEEEEeCChHHHHHHHHHhHHhcCCCCCcceEeeecCCCCCC---CCCCccEEEE
Q 026036 77 ERRRCIELGSGTGALAIFLRKAMNLDITTSDYNDQEIEDNIAYNSTTNGITPALPHIKHSWGDAFPI---PNPDWDLILA 153 (244)
Q Consensus 77 ~~~~VLdlG~G~G~~~~~~a~~~~~~v~~~D~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~fD~I~~ 153 (244)
++.+|||+|||+|.+++.++..+..+|+++|+++.++ +.+++|+..|++..++..+..+..+.++. ...+||+|++
T Consensus 217 ~~~~VLDl~~G~G~~~~~la~~g~~~v~~vD~s~~~l-~~a~~n~~~n~~~~~v~~~~~d~~~~~~~~~~~~~~fD~Vi~ 295 (396)
T 2as0_A 217 PGDRVLDVFTYTGGFAIHAAIAGADEVIGIDKSPRAI-ETAKENAKLNGVEDRMKFIVGSAFEEMEKLQKKGEKFDIVVL 295 (396)
T ss_dssp TTCEEEETTCTTTHHHHHHHHTTCSEEEEEESCHHHH-HHHHHHHHHTTCGGGEEEEESCHHHHHHHHHHTTCCEEEEEE
T ss_pred CCCeEEEecCCCCHHHHHHHHCCCCEEEEEeCCHHHH-HHHHHHHHHcCCCccceEEECCHHHHHHHHHhhCCCCCEEEE
Confidence 7789999999999999999987566999999999997 89999999988743444443333221111 2458999999
Q ss_pred cccccCCcCh-------HHHHHHHHHHHHhcCCCCceEee
Q 026036 154 SDILLYVKQY-------SNLIKSLSVLLKSYKPKDSQVGH 186 (244)
Q Consensus 154 ~~~l~~~~~~-------~~l~~~l~~~~~~lk~gG~~~~~ 186 (244)
..+.|. ... ....+.+..+.+.|+|||.++++
T Consensus 296 dpP~~~-~~~~~~~~~~~~~~~~l~~~~~~LkpgG~lv~~ 334 (396)
T 2as0_A 296 DPPAFV-QHEKDLKAGLRAYFNVNFAGLNLVKDGGILVTC 334 (396)
T ss_dssp CCCCSC-SSGGGHHHHHHHHHHHHHHHHTTEEEEEEEEEE
T ss_pred CCCCCC-CCHHHHHHHHHHHHHHHHHHHHhcCCCcEEEEE
Confidence 766533 221 34557888999999999987765
|
| >1i1n_A Protein-L-isoaspartate O-methyltransferase; S-adenosyl homocysteine, protein repair; HET: SAH; 1.50A {Homo sapiens} SCOP: c.66.1.7 PDB: 1kr5_A* | Back alignment and structure |
|---|
Probab=99.35 E-value=4.1e-12 Score=100.68 Aligned_cols=103 Identities=15% Similarity=0.170 Sum_probs=73.7
Q ss_pred cccCCeEEEeCCCCcHHHHHHHHhCC--CeEEEEeCChHHHHHHHHHhHHhcCC----CCCcceEeeecCCCCCCCCCCc
Q 026036 75 WIERRRCIELGSGTGALAIFLRKAMN--LDITTSDYNDQEIEDNIAYNSTTNGI----TPALPHIKHSWGDAFPIPNPDW 148 (244)
Q Consensus 75 ~~~~~~VLdlG~G~G~~~~~~a~~~~--~~v~~~D~~~~~l~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~f 148 (244)
..++.+|||+|||+|..+..+++..+ .+|+++|+++.++ +.++++...++. ..++..+..+..+. ....++|
T Consensus 75 ~~~~~~vLDiG~G~G~~~~~la~~~~~~~~v~~vD~s~~~~-~~a~~~~~~~~~~~~~~~~v~~~~~d~~~~-~~~~~~f 152 (226)
T 1i1n_A 75 LHEGAKALDVGSGSGILTACFARMVGCTGKVIGIDHIKELV-DDSVNNVRKDDPTLLSSGRVQLVVGDGRMG-YAEEAPY 152 (226)
T ss_dssp SCTTCEEEEETCTTSHHHHHHHHHHCTTCEEEEEESCHHHH-HHHHHHHHHHCTHHHHTSSEEEEESCGGGC-CGGGCCE
T ss_pred CCCCCEEEEEcCCcCHHHHHHHHHhCCCcEEEEEeCCHHHH-HHHHHHHHhhcccccCCCcEEEEECCcccC-cccCCCc
Confidence 45788999999999999999987743 6999999999987 777777765432 12333333333221 2224579
Q ss_pred cEEEEcccccCCcChHHHHHHHHHHHHhcCCCCceEeecc
Q 026036 149 DLILASDILLYVKQYSNLIKSLSVLLKSYKPKDSQVGHLT 188 (244)
Q Consensus 149 D~I~~~~~l~~~~~~~~l~~~l~~~~~~lk~gG~~~~~~~ 188 (244)
|+|++..++ .+ .++++.+.|||||++++.+.
T Consensus 153 D~i~~~~~~-~~--------~~~~~~~~LkpgG~lv~~~~ 183 (226)
T 1i1n_A 153 DAIHVGAAA-PV--------VPQALIDQLKPGGRLILPVG 183 (226)
T ss_dssp EEEEECSBB-SS--------CCHHHHHTEEEEEEEEEEES
T ss_pred CEEEECCch-HH--------HHHHHHHhcCCCcEEEEEEe
Confidence 999998876 22 22468899999999988743
|
| >2b25_A Hypothetical protein; structural genomics, methyl transferase, SAM, structural GEN consortium, SGC, transferase; HET: SAM; 2.50A {Homo sapiens} SCOP: c.66.1.13 | Back alignment and structure |
|---|
Probab=99.34 E-value=2.8e-12 Score=107.96 Aligned_cols=111 Identities=16% Similarity=0.196 Sum_probs=74.2
Q ss_pred HhhccCcccCCeEEEeCCCCcHHHHHHHHhC-C-CeEEEEeCChHHHHHHHHHhHHh-------cCCC---CCcceEeee
Q 026036 69 LMHHREWIERRRCIELGSGTGALAIFLRKAM-N-LDITTSDYNDQEIEDNIAYNSTT-------NGIT---PALPHIKHS 136 (244)
Q Consensus 69 ~~~~~~~~~~~~VLdlG~G~G~~~~~~a~~~-~-~~v~~~D~~~~~l~~~~~~~~~~-------~~~~---~~~~~~~~~ 136 (244)
+.......++.+|||+|||+|.++..+++.. . .+|+++|+++.++ +.+++|... |++. .++..+..+
T Consensus 97 ~l~~l~~~~g~~VLDiG~G~G~~~~~la~~~g~~~~v~~vD~~~~~~-~~a~~~~~~~~~~~~ln~~~~~~~~v~~~~~d 175 (336)
T 2b25_A 97 ILSMMDINPGDTVLEAGSGSGGMSLFLSKAVGSQGRVISFEVRKDHH-DLAKKNYKHWRDSWKLSHVEEWPDNVDFIHKD 175 (336)
T ss_dssp HHHHHTCCTTCEEEEECCTTSHHHHHHHHHHCTTCEEEEEESSHHHH-HHHHHHHHHHHHHHTTTCSSCCCCCEEEEESC
T ss_pred HHHhcCCCCCCEEEEeCCCcCHHHHHHHHHhCCCceEEEEeCCHHHH-HHHHHHHHHhhcccccccccccCCceEEEECC
Confidence 3333455688999999999999999998873 3 7999999999987 788877763 3321 233333333
Q ss_pred cCCCC-CCCCCCccEEEEcccccCCcChHHHHHHHHHHHHhcCCCCceEeecc
Q 026036 137 WGDAF-PIPNPDWDLILASDILLYVKQYSNLIKSLSVLLKSYKPKDSQVGHLT 188 (244)
Q Consensus 137 ~~~~~-~~~~~~fD~I~~~~~l~~~~~~~~l~~~l~~~~~~lk~gG~~~~~~~ 188 (244)
..+.. ++.+++||+|+++... .. ..++++.+.|+|||++++...
T Consensus 176 ~~~~~~~~~~~~fD~V~~~~~~-----~~---~~l~~~~~~LkpgG~lv~~~~ 220 (336)
T 2b25_A 176 ISGATEDIKSLTFDAVALDMLN-----PH---VTLPVFYPHLKHGGVCAVYVV 220 (336)
T ss_dssp TTCCC-------EEEEEECSSS-----TT---TTHHHHGGGEEEEEEEEEEES
T ss_pred hHHcccccCCCCeeEEEECCCC-----HH---HHHHHHHHhcCCCcEEEEEeC
Confidence 33322 2344579999985332 11 367889999999999987743
|
| >3cbg_A O-methyltransferase; cyanobacterium; HET: SAH FER 4FE; 2.00A {Synechocystis SP} | Back alignment and structure |
|---|
Probab=99.33 E-value=5.8e-13 Score=106.32 Aligned_cols=105 Identities=13% Similarity=0.104 Sum_probs=76.5
Q ss_pred ccCCeEEEeCCCCcHHHHHHHHhC--CCeEEEEeCChHHHHHHHHHhHHhcCCCCCcceEeeecCCC---CCCCC--CCc
Q 026036 76 IERRRCIELGSGTGALAIFLRKAM--NLDITTSDYNDQEIEDNIAYNSTTNGITPALPHIKHSWGDA---FPIPN--PDW 148 (244)
Q Consensus 76 ~~~~~VLdlG~G~G~~~~~~a~~~--~~~v~~~D~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~--~~f 148 (244)
.++.+|||+|||+|..++.++... +.+|+++|+++.++ +.++++...+++..++..+..+..+. ++..+ ++|
T Consensus 71 ~~~~~vLdiG~G~G~~~~~la~~~~~~~~v~~iD~~~~~~-~~a~~~~~~~g~~~~i~~~~~d~~~~l~~l~~~~~~~~f 149 (232)
T 3cbg_A 71 TGAKQVLEIGVFRGYSALAMALQLPPDGQIIACDQDPNAT-AIAKKYWQKAGVAEKISLRLGPALATLEQLTQGKPLPEF 149 (232)
T ss_dssp HTCCEEEEECCTTSHHHHHHHTTSCTTCEEEEEESCHHHH-HHHHHHHHHHTCGGGEEEEESCHHHHHHHHHTSSSCCCE
T ss_pred cCCCEEEEecCCCCHHHHHHHHhCCCCCEEEEEECCHHHH-HHHHHHHHHcCCCCcEEEEEcCHHHHHHHHHhcCCCCCc
Confidence 466799999999999999998875 56999999999987 78888877766643344333322111 11112 689
Q ss_pred cEEEEcccccCCcChHHHHHHHHHHHHhcCCCCceEeec
Q 026036 149 DLILASDILLYVKQYSNLIKSLSVLLKSYKPKDSQVGHL 187 (244)
Q Consensus 149 D~I~~~~~l~~~~~~~~l~~~l~~~~~~lk~gG~~~~~~ 187 (244)
|+|++... .......++.+.++|+|||.+++..
T Consensus 150 D~V~~d~~------~~~~~~~l~~~~~~LkpgG~lv~~~ 182 (232)
T 3cbg_A 150 DLIFIDAD------KRNYPRYYEIGLNLLRRGGLMVIDN 182 (232)
T ss_dssp EEEEECSC------GGGHHHHHHHHHHTEEEEEEEEEEC
T ss_pred CEEEECCC------HHHHHHHHHHHHHHcCCCeEEEEeC
Confidence 99998543 2345588999999999999988763
|
| >2bm8_A Cephalosporin hydroxylase CMCI; cephamycin biosynthesis; 2.5A {Streptomyces clavuligerus} SCOP: c.66.1.50 PDB: 2bm9_A* 2br5_A* 2br4_A* 2br3_A* | Back alignment and structure |
|---|
Probab=99.32 E-value=2e-12 Score=103.49 Aligned_cols=97 Identities=14% Similarity=0.104 Sum_probs=68.0
Q ss_pred cCCeEEEeCCCCcHHHHHHHHh----C-CCeEEEEeCChHHHHHHHHHhHHhcCCCCCcceEeeecCCC--CCCCC-CCc
Q 026036 77 ERRRCIELGSGTGALAIFLRKA----M-NLDITTSDYNDQEIEDNIAYNSTTNGITPALPHIKHSWGDA--FPIPN-PDW 148 (244)
Q Consensus 77 ~~~~VLdlG~G~G~~~~~~a~~----~-~~~v~~~D~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~-~~f 148 (244)
++.+|||||||+|..+..+++. . +.+|+++|+++.++ +.++ . ...++..+..+..+. ++... .+|
T Consensus 81 ~~~~VLDiG~GtG~~t~~la~~~~~~~~~~~V~gvD~s~~~l-~~a~-~-----~~~~v~~~~gD~~~~~~l~~~~~~~f 153 (236)
T 2bm8_A 81 RPRTIVELGVYNGGSLAWFRDLTKIMGIDCQVIGIDRDLSRC-QIPA-S-----DMENITLHQGDCSDLTTFEHLREMAH 153 (236)
T ss_dssp CCSEEEEECCTTSHHHHHHHHHHHHTTCCCEEEEEESCCTTC-CCCG-G-----GCTTEEEEECCSSCSGGGGGGSSSCS
T ss_pred CCCEEEEEeCCCCHHHHHHHHhhhhcCCCCEEEEEeCChHHH-HHHh-c-----cCCceEEEECcchhHHHHHhhccCCC
Confidence 5679999999999999999886 2 68999999999876 4443 1 112334444443332 22223 379
Q ss_pred cEEEEcccccCCcChHHHHHHHHHHHH-hcCCCCceEee
Q 026036 149 DLILASDILLYVKQYSNLIKSLSVLLK-SYKPKDSQVGH 186 (244)
Q Consensus 149 D~I~~~~~l~~~~~~~~l~~~l~~~~~-~lk~gG~~~~~ 186 (244)
|+|++... + . .....+.++.+ .|||||++++.
T Consensus 154 D~I~~d~~--~-~---~~~~~l~~~~r~~LkpGG~lv~~ 186 (236)
T 2bm8_A 154 PLIFIDNA--H-A---NTFNIMKWAVDHLLEEGDYFIIE 186 (236)
T ss_dssp SEEEEESS--C-S---SHHHHHHHHHHHTCCTTCEEEEC
T ss_pred CEEEECCc--h-H---hHHHHHHHHHHhhCCCCCEEEEE
Confidence 99998544 2 2 34478899997 99999998875
|
| >3m6w_A RRNA methylase; rRNA methyltransferase, 5-methylcytidine, RSMF, adoMet, MULT specific, methyltransferase, transferase; HET: CXM SAM; 1.30A {Thermus thermophilus} PDB: 3m6v_A* 3m6u_A* 3m6x_A* | Back alignment and structure |
|---|
Probab=99.32 E-value=2.3e-12 Score=112.29 Aligned_cols=119 Identities=11% Similarity=0.034 Sum_probs=80.7
Q ss_pred hHHHHHHHHhhccCcccCCeEEEeCCCCcHHHHHHHHhC--CCeEEEEeCChHHHHHHHHHhHHhcCCCCCcceEeeecC
Q 026036 61 GTFSFAEWLMHHREWIERRRCIELGSGTGALAIFLRKAM--NLDITTSDYNDQEIEDNIAYNSTTNGITPALPHIKHSWG 138 (244)
Q Consensus 61 ~~~~l~~~~~~~~~~~~~~~VLdlG~G~G~~~~~~a~~~--~~~v~~~D~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 138 (244)
++..++..+ ...+|.+|||+|||+|..+..++... ..+|+++|+++.++ +.+++|+..+++. +..+..+..
T Consensus 89 ss~l~a~~L----~~~~g~~VLDlgaGpG~kt~~LA~~~~~~g~V~AvDis~~~l-~~a~~n~~r~G~~--v~~~~~Da~ 161 (464)
T 3m6w_A 89 SAQAVGVLL----DPKPGERVLDLAAAPGGKTTHLAARMGGKGLLLANEVDGKRV-RGLLENVERWGAP--LAVTQAPPR 161 (464)
T ss_dssp TTHHHHHHH----CCCTTCEEEESSCTTCHHHHHHHHHTTTCSEEEEECSCHHHH-HHHHHHHHHHCCC--CEEECSCHH
T ss_pred HHHHHHHhc----CcCCCCEEEEEcCCcCHHHHHHHHhCCCCCEEEEEECCHHHH-HHHHHHHHHcCCe--EEEEECCHH
Confidence 344444443 34578899999999999999998775 36899999999997 8899999888873 333322221
Q ss_pred CCCCCCCCCccEEEEcccc------cCCcCh-------------HHHHHHHHHHHHhcCCCCceEee
Q 026036 139 DAFPIPNPDWDLILASDIL------LYVKQY-------------SNLIKSLSVLLKSYKPKDSQVGH 186 (244)
Q Consensus 139 ~~~~~~~~~fD~I~~~~~l------~~~~~~-------------~~l~~~l~~~~~~lk~gG~~~~~ 186 (244)
+......++||+|++..+. ...... ....+.++++.++|||||+++++
T Consensus 162 ~l~~~~~~~FD~Il~D~PcSg~G~~rr~pd~~~~~~~~~~~~l~~~Q~~iL~~a~~~LkpGG~Lvys 228 (464)
T 3m6w_A 162 ALAEAFGTYFHRVLLDAPCSGEGMFRKDREAARHWGPSAPKRMAEVQKALLAQASRLLGPGGVLVYS 228 (464)
T ss_dssp HHHHHHCSCEEEEEEECCCCCGGGTTTCTTSGGGCCTTHHHHHHHHHHHHHHHHHTTEEEEEEEEEE
T ss_pred HhhhhccccCCEEEECCCcCCccccccChHHhhhcCHHHHHHHHHHHHHHHHHHHHhcCCCcEEEEE
Confidence 1111124689999974331 111110 01157889999999999998875
|
| >3frh_A 16S rRNA methylase; methyltransferase domain, helical N-terminal domain, methyltransferase, plasmid, transferase; HET: SAH; 1.20A {Escherichia coli} PDB: 3fri_A* 3b89_A* | Back alignment and structure |
|---|
Probab=99.32 E-value=2.7e-11 Score=95.81 Aligned_cols=99 Identities=20% Similarity=0.200 Sum_probs=71.0
Q ss_pred ccCCeEEEeCCCCcHHHHHHHHhCCCeEEEEeCChHHHHHHHHHhHHhcCCCCCcceEeeecCCCC-CCCCCCccEEEEc
Q 026036 76 IERRRCIELGSGTGALAIFLRKAMNLDITTSDYNDQEIEDNIAYNSTTNGITPALPHIKHSWGDAF-PIPNPDWDLILAS 154 (244)
Q Consensus 76 ~~~~~VLdlG~G~G~~~~~~a~~~~~~v~~~D~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~fD~I~~~ 154 (244)
.+..+|||||||+|.+++.++ ...+|+++|+++.++ +.++.+...++. ...+...|.. ....++||+|+++
T Consensus 104 ~~p~~VLDlGCG~gpLal~~~--~~~~y~a~DId~~~i-~~ar~~~~~~g~-----~~~~~v~D~~~~~~~~~~DvvLll 175 (253)
T 3frh_A 104 ETPRRVLDIACGLNPLALYER--GIASVWGCDIHQGLG-DVITPFAREKDW-----DFTFALQDVLCAPPAEAGDLALIF 175 (253)
T ss_dssp CCCSEEEEETCTTTHHHHHHT--TCSEEEEEESBHHHH-HHHHHHHHHTTC-----EEEEEECCTTTSCCCCBCSEEEEE
T ss_pred CCCCeEEEecCCccHHHHHhc--cCCeEEEEeCCHHHH-HHHHHHHHhcCC-----CceEEEeecccCCCCCCcchHHHH
Confidence 356799999999999999886 688999999999998 899999888775 2333343432 2334589999999
Q ss_pred ccccCCcChHHHHHHHHHHHHhcCCCCceE
Q 026036 155 DILLYVKQYSNLIKSLSVLLKSYKPKDSQV 184 (244)
Q Consensus 155 ~~l~~~~~~~~l~~~l~~~~~~lk~gG~~~ 184 (244)
.++ ++.....- ....++...|+++|.++
T Consensus 176 k~l-h~LE~q~~-~~~~~ll~aL~~~~vvV 203 (253)
T 3frh_A 176 KLL-PLLEREQA-GSAMALLQSLNTPRMAV 203 (253)
T ss_dssp SCH-HHHHHHST-THHHHHHHHCBCSEEEE
T ss_pred HHH-HHhhhhch-hhHHHHHHHhcCCCEEE
Confidence 777 33222211 33447778899987443
|
| >1ej0_A FTSJ; methyltransferase, adoMet, adenosyl methionine, heat shock proteins, 23S ribosomal RNA; HET: SAM; 1.50A {Escherichia coli} SCOP: c.66.1.2 PDB: 1eiz_A* | Back alignment and structure |
|---|
Probab=99.32 E-value=3.1e-12 Score=96.88 Aligned_cols=112 Identities=11% Similarity=0.109 Sum_probs=76.3
Q ss_pred hHHHHHHHHhhccCcccCCeEEEeCCCCcHHHHHHHHhC--CCeEEEEeCChHHHHHHHHHhHHhcCCCCCcceEeeecC
Q 026036 61 GTFSFAEWLMHHREWIERRRCIELGSGTGALAIFLRKAM--NLDITTSDYNDQEIEDNIAYNSTTNGITPALPHIKHSWG 138 (244)
Q Consensus 61 ~~~~l~~~~~~~~~~~~~~~VLdlG~G~G~~~~~~a~~~--~~~v~~~D~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 138 (244)
+...+.+.+.......++.+|||+|||+|..+..+++.. +.+|+++|+++ ++ +. .++..+..+..
T Consensus 6 ~~~~l~~~~~~~~~~~~~~~vLd~G~G~G~~~~~l~~~~~~~~~v~~~D~~~-~~-~~-----------~~~~~~~~d~~ 72 (180)
T 1ej0_A 6 AWFKLDEIQQSDKLFKPGMTVVDLGAAPGGWSQYVVTQIGGKGRIIACDLLP-MD-PI-----------VGVDFLQGDFR 72 (180)
T ss_dssp HHHHHHHHHHHHCCCCTTCEEEEESCTTCHHHHHHHHHHCTTCEEEEEESSC-CC-CC-----------TTEEEEESCTT
T ss_pred HHHHHHHHHHHhCCCCCCCeEEEeCCCCCHHHHHHHHHhCCCCeEEEEECcc-cc-cc-----------CcEEEEEcccc
Confidence 444555555554445678899999999999999998873 47999999999 64 21 12233333332
Q ss_pred CCCC--------CCCCCccEEEEcccccCCcCh--HH------HHHHHHHHHHhcCCCCceEee
Q 026036 139 DAFP--------IPNPDWDLILASDILLYVKQY--SN------LIKSLSVLLKSYKPKDSQVGH 186 (244)
Q Consensus 139 ~~~~--------~~~~~fD~I~~~~~l~~~~~~--~~------l~~~l~~~~~~lk~gG~~~~~ 186 (244)
+. + ..+++||+|+++.+++..... .. ....++++.+.|+|||.+++.
T Consensus 73 ~~-~~~~~~~~~~~~~~~D~i~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~gG~l~~~ 135 (180)
T 1ej0_A 73 DE-LVMKALLERVGDSKVQVVMSDMAPNMSGTPAVDIPRAMYLVELALEMCRDVLAPGGSFVVK 135 (180)
T ss_dssp SH-HHHHHHHHHHTTCCEEEEEECCCCCCCSCHHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEE
T ss_pred cc-hhhhhhhccCCCCceeEEEECCCccccCCCccchHHHHHHHHHHHHHHHHHcCCCcEEEEE
Confidence 21 1 335689999998887332221 11 158889999999999988875
|
| >2plw_A Ribosomal RNA methyltransferase, putative; malaria, SAM, structural genomics, structural genomics consortium, SGC; HET: SAM; 1.70A {Plasmodium falciparum} | Back alignment and structure |
|---|
Probab=99.32 E-value=9.2e-12 Score=96.76 Aligned_cols=112 Identities=11% Similarity=0.107 Sum_probs=73.5
Q ss_pred hHHHHHHHHhhccCcccCCeEEEeCCCCcHHHHHHHHhCC---CeEEEEeCChHHHHHHHHHhHHhcCCCCCcceEeeec
Q 026036 61 GTFSFAEWLMHHREWIERRRCIELGSGTGALAIFLRKAMN---LDITTSDYNDQEIEDNIAYNSTTNGITPALPHIKHSW 137 (244)
Q Consensus 61 ~~~~l~~~~~~~~~~~~~~~VLdlG~G~G~~~~~~a~~~~---~~v~~~D~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~ 137 (244)
++..|.+.........++.+|||||||+|.++..+++..+ .+|+|+|+++.+ . . ..+..+..+.
T Consensus 6 ~~~kl~~~~~~~~~~~~~~~vLDlGcG~G~~~~~l~~~~~~~~~~v~gvD~s~~~--~----------~-~~v~~~~~d~ 72 (201)
T 2plw_A 6 AAYKLIELDNKYLFLKKNKIILDIGCYPGSWCQVILERTKNYKNKIIGIDKKIMD--P----------I-PNVYFIQGEI 72 (201)
T ss_dssp THHHHHHHHHHHCCCCTTEEEEEESCTTCHHHHHHHHHTTTSCEEEEEEESSCCC--C----------C-TTCEEEECCT
T ss_pred HHHHHHHHHHHcCCCCCCCEEEEeCCCCCHHHHHHHHHcCCCCceEEEEeCCccC--C----------C-CCceEEEccc
Confidence 5566666555444455788999999999999999998763 789999999831 0 1 1122333333
Q ss_pred CCCC------------------------CCCCCCccEEEEcccccCCcCh--HH-------HHHHHHHHHHhcCCCCceE
Q 026036 138 GDAF------------------------PIPNPDWDLILASDILLYVKQY--SN-------LIKSLSVLLKSYKPKDSQV 184 (244)
Q Consensus 138 ~~~~------------------------~~~~~~fD~I~~~~~l~~~~~~--~~-------l~~~l~~~~~~lk~gG~~~ 184 (244)
.+.. .+...+||+|+++.++ ++... .+ ..+.++++.++|||||+++
T Consensus 73 ~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~fD~v~~~~~~-~~~g~~~~d~~~~~~~~~~~l~~~~~~LkpgG~lv 151 (201)
T 2plw_A 73 GKDNMNNIKNINYIDNMNNNSVDYKLKEILQDKKIDIILSDAAV-PCIGNKIDDHLNSCELTLSITHFMEQYINIGGTYI 151 (201)
T ss_dssp TTTSSCCC-----------CHHHHHHHHHHTTCCEEEEEECCCC-CCCSCHHHHHHHHHHHHHHHHHHHHHHEEEEEEEE
T ss_pred cchhhhhhccccccccccchhhHHHHHhhcCCCcccEEEeCCCc-CCCCCcccCHHHHHHHHHHHHHHHHHHccCCCEEE
Confidence 2211 0234589999997765 32111 11 1247888999999999888
Q ss_pred ee
Q 026036 185 GH 186 (244)
Q Consensus 185 ~~ 186 (244)
+.
T Consensus 152 ~~ 153 (201)
T 2plw_A 152 VK 153 (201)
T ss_dssp EE
T ss_pred EE
Confidence 75
|
| >3m4x_A NOL1/NOP2/SUN family protein; mtase domain, PUA domain, RRM motif, transferase; 2.28A {Enterococcus faecium} | Back alignment and structure |
|---|
Probab=99.32 E-value=3.1e-12 Score=111.29 Aligned_cols=144 Identities=13% Similarity=0.050 Sum_probs=94.2
Q ss_pred hHHHHHHHHhhccCcccCCeEEEeCCCCcHHHHHHHHhC--CCeEEEEeCChHHHHHHHHHhHHhcCCCCCcceEeeecC
Q 026036 61 GTFSFAEWLMHHREWIERRRCIELGSGTGALAIFLRKAM--NLDITTSDYNDQEIEDNIAYNSTTNGITPALPHIKHSWG 138 (244)
Q Consensus 61 ~~~~l~~~~~~~~~~~~~~~VLdlG~G~G~~~~~~a~~~--~~~v~~~D~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 138 (244)
++..++..+ ...+|.+|||+|||+|..+..++... ..+|+++|+++.++ +.+++|+..+++. + +.+..+
T Consensus 93 ss~l~~~~L----~~~~g~~VLDlcaGpGgkt~~lA~~~~~~g~V~AvDis~~rl-~~~~~n~~r~g~~-n---v~v~~~ 163 (456)
T 3m4x_A 93 SAMIVGTAA----AAKPGEKVLDLCAAPGGKSTQLAAQMKGKGLLVTNEIFPKRA-KILSENIERWGVS-N---AIVTNH 163 (456)
T ss_dssp TTHHHHHHH----CCCTTCEEEESSCTTCHHHHHHHHHHTTCSEEEEECSSHHHH-HHHHHHHHHHTCS-S---EEEECC
T ss_pred HHHHHHHHc----CCCCCCEEEEECCCcCHHHHHHHHHcCCCCEEEEEeCCHHHH-HHHHHHHHHcCCC-c---eEEEeC
Confidence 344444544 34578899999999999999998764 46899999999987 8899999888873 2 233333
Q ss_pred CCCC---CCCCCccEEEEcccc-----cCC----------cCh----HHHHHHHHHHHHhcCCCCceEeecccccCCCCC
Q 026036 139 DAFP---IPNPDWDLILASDIL-----LYV----------KQY----SNLIKSLSVLLKSYKPKDSQVGHLTKNEQGEGT 196 (244)
Q Consensus 139 ~~~~---~~~~~fD~I~~~~~l-----~~~----------~~~----~~l~~~l~~~~~~lk~gG~~~~~~~~~~~~~~~ 196 (244)
+... ...++||+|++..+. +.. ... ....+.+.++.++|||||+++.++-..
T Consensus 164 Da~~l~~~~~~~FD~Il~DaPCSg~G~~rr~p~~~~~~~~~~~~~l~~~Q~~iL~~a~~~LkpGG~LvYsTCs~------ 237 (456)
T 3m4x_A 164 APAELVPHFSGFFDRIVVDAPCSGEGMFRKDPNAIKEWTEESPLYCQKRQQEILSSAIKMLKNKGQLIYSTCTF------ 237 (456)
T ss_dssp CHHHHHHHHTTCEEEEEEECCCCCGGGTTTCHHHHHHCCTTHHHHHHHHHHHHHHHHHHTEEEEEEEEEEESCC------
T ss_pred CHHHhhhhccccCCEEEECCCCCCccccccCHHHhhhcCHHHHHHHHHHHHHHHHHHHHhcCCCcEEEEEEeec------
Confidence 3211 124689999985542 010 000 111277889999999999887652111
Q ss_pred CCCCCCeEEEeeeeccCccchhhHHHHHhhcCCeEEEe
Q 026036 197 EGLPWPAFLMSWRRRIGKEDETIFFTSCENAGLEVKHL 234 (244)
Q Consensus 197 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gf~v~~~ 234 (244)
...++.......+++++|+++.+
T Consensus 238 ---------------~~eEne~vv~~~l~~~~~~l~~~ 260 (456)
T 3m4x_A 238 ---------------APEENEEIISWLVENYPVTIEEI 260 (456)
T ss_dssp ---------------CGGGTHHHHHHHHHHSSEEEECC
T ss_pred ---------------ccccCHHHHHHHHHhCCCEEEec
Confidence 11133455556677777777665
|
| >1zq9_A Probable dimethyladenosine transferase; SGC, structural genomics, structural genomics consortium; HET: SAM; 1.90A {Homo sapiens} SCOP: c.66.1.24 | Back alignment and structure |
|---|
Probab=99.31 E-value=1.3e-11 Score=101.49 Aligned_cols=115 Identities=14% Similarity=0.182 Sum_probs=76.8
Q ss_pred HHHHHhhccCcccCCeEEEeCCCCcHHHHHHHHhCCCeEEEEeCChHHHHHHHHHhHHhcCCCCCcceEeeecCCCCCCC
Q 026036 65 FAEWLMHHREWIERRRCIELGSGTGALAIFLRKAMNLDITTSDYNDQEIEDNIAYNSTTNGITPALPHIKHSWGDAFPIP 144 (244)
Q Consensus 65 l~~~~~~~~~~~~~~~VLdlG~G~G~~~~~~a~~~~~~v~~~D~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 144 (244)
+++.+.......++.+|||+|||+|.++..+++. +.+|+++|+++.++ +.++++...++...+ +.+..+|.....
T Consensus 16 i~~~i~~~~~~~~~~~VLDiG~G~G~lt~~L~~~-~~~v~~vD~~~~~~-~~a~~~~~~~~~~~~---v~~~~~D~~~~~ 90 (285)
T 1zq9_A 16 IINSIIDKAALRPTDVVLEVGPGTGNMTVKLLEK-AKKVVACELDPRLV-AELHKRVQGTPVASK---LQVLVGDVLKTD 90 (285)
T ss_dssp HHHHHHHHTCCCTTCEEEEECCTTSTTHHHHHHH-SSEEEEEESCHHHH-HHHHHHHTTSTTGGG---EEEEESCTTTSC
T ss_pred HHHHHHHhcCCCCCCEEEEEcCcccHHHHHHHhh-CCEEEEEECCHHHH-HHHHHHHHhcCCCCc---eEEEEcceeccc
Confidence 4445555555567889999999999999999887 67999999999987 777777654443222 333344443333
Q ss_pred CCCccEEEEcccccCCcChHHHHHHHH--------------HH--HHhcCCCCceEee
Q 026036 145 NPDWDLILASDILLYVKQYSNLIKSLS--------------VL--LKSYKPKDSQVGH 186 (244)
Q Consensus 145 ~~~fD~I~~~~~l~~~~~~~~l~~~l~--------------~~--~~~lk~gG~~~~~ 186 (244)
.++||+|+++.++ +.. .+.+...+. ++ .++++|||+++..
T Consensus 91 ~~~fD~vv~nlpy-~~~-~~~~~~~l~~~~~~~~~~~m~qkEva~r~vlkPGg~~y~~ 146 (285)
T 1zq9_A 91 LPFFDTCVANLPY-QIS-SPFVFKLLLHRPFFRCAILMFQREFALRLVAKPGDKLYCR 146 (285)
T ss_dssp CCCCSEEEEECCG-GGH-HHHHHHHHHCSSCCSEEEEEEEHHHHHHHHCCTTCTTCSH
T ss_pred chhhcEEEEecCc-ccc-hHHHHHHHhcCcchhhhhhhhhHHHHHHHhcCCCCcccch
Confidence 3479999997664 432 222333332 22 3689999987643
|
| >1r18_A Protein-L-isoaspartate(D-aspartate)-O-methyltrans; methyltransferase, isomerization, protein repair, S-adenosyl homocysteine; HET: SAH; 2.20A {Drosophila melanogaster} SCOP: c.66.1.7 | Back alignment and structure |
|---|
Probab=99.31 E-value=2.5e-12 Score=102.18 Aligned_cols=101 Identities=13% Similarity=0.132 Sum_probs=72.2
Q ss_pred cccCCeEEEeCCCCcHHHHHHHHhCC-------CeEEEEeCChHHHHHHHHHhHHhcC-----CCCCcceEeeecCCCCC
Q 026036 75 WIERRRCIELGSGTGALAIFLRKAMN-------LDITTSDYNDQEIEDNIAYNSTTNG-----ITPALPHIKHSWGDAFP 142 (244)
Q Consensus 75 ~~~~~~VLdlG~G~G~~~~~~a~~~~-------~~v~~~D~~~~~l~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~ 142 (244)
..++.+|||+|||+|..+..+++..+ .+|+++|+++.++ +.++++...++ . .++..+..+..+ .
T Consensus 82 ~~~~~~VLdiG~G~G~~~~~la~~~~~~~~~~~~~v~~vD~~~~~~-~~a~~~~~~~~~~~~~~-~~v~~~~~d~~~--~ 157 (227)
T 1r18_A 82 LKPGARILDVGSGSGYLTACFYRYIKAKGVDADTRIVGIEHQAELV-RRSKANLNTDDRSMLDS-GQLLIVEGDGRK--G 157 (227)
T ss_dssp CCTTCEEEEESCTTSHHHHHHHHHHHHSCCCTTCEEEEEESCHHHH-HHHHHHHHHHHHHHHHH-TSEEEEESCGGG--C
T ss_pred CCCCCEEEEECCCccHHHHHHHHhcccccCCccCEEEEEEcCHHHH-HHHHHHHHhcCccccCC-CceEEEECCccc--C
Confidence 45788999999999999999887544 5999999999987 77777665433 1 122333333322 2
Q ss_pred CCC-CCccEEEEcccccCCcChHHHHHHHHHHHHhcCCCCceEeecc
Q 026036 143 IPN-PDWDLILASDILLYVKQYSNLIKSLSVLLKSYKPKDSQVGHLT 188 (244)
Q Consensus 143 ~~~-~~fD~I~~~~~l~~~~~~~~l~~~l~~~~~~lk~gG~~~~~~~ 188 (244)
... ++||+|++..++ ++. .+++.+.|||||++++.+.
T Consensus 158 ~~~~~~fD~I~~~~~~-~~~--------~~~~~~~LkpgG~lvi~~~ 195 (227)
T 1r18_A 158 YPPNAPYNAIHVGAAA-PDT--------PTELINQLASGGRLIVPVG 195 (227)
T ss_dssp CGGGCSEEEEEECSCB-SSC--------CHHHHHTEEEEEEEEEEES
T ss_pred CCcCCCccEEEECCch-HHH--------HHHHHHHhcCCCEEEEEEe
Confidence 222 579999998887 322 1568899999999988743
|
| >2yxl_A PH0851 protein, 450AA long hypothetical FMU protein; FMU-homolog, methyltransferase, structural genomics, NPPSFA; HET: SFG; 2.55A {Pyrococcus horikoshii} | Back alignment and structure |
|---|
Probab=99.31 E-value=2.9e-11 Score=105.63 Aligned_cols=111 Identities=14% Similarity=0.082 Sum_probs=76.7
Q ss_pred CcccCCeEEEeCCCCcHHHHHHHHhC-C-CeEEEEeCChHHHHHHHHHhHHhcCCCCCcceEeeecCCCCC-CCCCCccE
Q 026036 74 EWIERRRCIELGSGTGALAIFLRKAM-N-LDITTSDYNDQEIEDNIAYNSTTNGITPALPHIKHSWGDAFP-IPNPDWDL 150 (244)
Q Consensus 74 ~~~~~~~VLdlG~G~G~~~~~~a~~~-~-~~v~~~D~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~fD~ 150 (244)
...++.+|||+|||+|..+..++... + .+|+++|+++.++ +.+++|+..++++ ++..+..+..+..+ +.+++||+
T Consensus 256 ~~~~g~~VLDlgaG~G~~t~~la~~~~~~~~v~a~D~s~~~l-~~~~~~~~~~g~~-~v~~~~~D~~~~~~~~~~~~fD~ 333 (450)
T 2yxl_A 256 DPKPGETVVDLAAAPGGKTTHLAELMKNKGKIYAFDVDKMRM-KRLKDFVKRMGIK-IVKPLVKDARKAPEIIGEEVADK 333 (450)
T ss_dssp CCCTTCEEEESSCTTCHHHHHHHHHTTTCSEEEEECSCHHHH-HHHHHHHHHTTCC-SEEEECSCTTCCSSSSCSSCEEE
T ss_pred CCCCcCEEEEeCCCccHHHHHHHHHcCCCCEEEEEcCCHHHH-HHHHHHHHHcCCC-cEEEEEcChhhcchhhccCCCCE
Confidence 34578899999999999999998875 3 7899999999987 8888888877763 23333333322211 22367999
Q ss_pred EEEccc------ccCCcC---------hHH----HHHHHHHHHHhcCCCCceEee
Q 026036 151 ILASDI------LLYVKQ---------YSN----LIKSLSVLLKSYKPKDSQVGH 186 (244)
Q Consensus 151 I~~~~~------l~~~~~---------~~~----l~~~l~~~~~~lk~gG~~~~~ 186 (244)
|++..+ +..+.. ... ..+.++++.+.|||||+++++
T Consensus 334 Vl~D~Pcsg~g~~~~~pd~~~~~~~~~~~~l~~~q~~iL~~a~~~LkpGG~lvy~ 388 (450)
T 2yxl_A 334 VLLDAPCTSSGTIGKNPELRWRLREDKINEMSQLQRELLESAARLVKPGGRLLYT 388 (450)
T ss_dssp EEEECCCCCGGGTTTSTTHHHHCCTTSHHHHHHHHHHHHHHHHTTEEEEEEEEEE
T ss_pred EEEcCCCCCCeeeccChhhhhhCCHHHHHHHHHHHHHHHHHHHHhcCCCcEEEEE
Confidence 997322 211111 001 147789999999999998876
|
| >1zg3_A Isoflavanone 4'-O-methyltransferase; rossman fold, plant Pro transferase; HET: 2HI SAH; 2.35A {Medicago truncatula} PDB: 1zga_A* 1zhf_A* 1zgj_A* | Back alignment and structure |
|---|
Probab=99.27 E-value=9.5e-11 Score=99.38 Aligned_cols=147 Identities=14% Similarity=0.063 Sum_probs=92.2
Q ss_pred ccCCeEEEeCCCCcHHHHHHHHhC-CCeEEEEeCChHHHHHHHHHhHHhcCCCCCcceEeeecCCCCCCCCCCccEEEEc
Q 026036 76 IERRRCIELGSGTGALAIFLRKAM-NLDITTSDYNDQEIEDNIAYNSTTNGITPALPHIKHSWGDAFPIPNPDWDLILAS 154 (244)
Q Consensus 76 ~~~~~VLdlG~G~G~~~~~~a~~~-~~~v~~~D~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fD~I~~~ 154 (244)
.++.+|||||||+|..+..+++.. ..+++++|+ +.++ +.++. . ..+..+..+..+ +. +.||+|+++
T Consensus 192 ~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~-~~a~~------~-~~v~~~~~d~~~--~~--~~~D~v~~~ 258 (358)
T 1zg3_A 192 EGLESLVDVGGGTGGVTKLIHEIFPHLKCTVFDQ-PQVV-GNLTG------N-ENLNFVGGDMFK--SI--PSADAVLLK 258 (358)
T ss_dssp HTCSEEEEETCTTSHHHHHHHHHCTTSEEEEEEC-HHHH-SSCCC------C-SSEEEEECCTTT--CC--CCCSEEEEE
T ss_pred cCCCEEEEECCCcCHHHHHHHHHCCCCeEEEecc-HHHH-hhccc------C-CCcEEEeCccCC--CC--CCceEEEEc
Confidence 356799999999999999998886 568999999 5665 33221 1 123333333323 22 259999999
Q ss_pred ccccCCcChHHHHHHHHHHHHhcCC---CCceEeecccccCCCCC----CCCCCCeEEEeeeeccCccchhhHHHHHhhc
Q 026036 155 DILLYVKQYSNLIKSLSVLLKSYKP---KDSQVGHLTKNEQGEGT----EGLPWPAFLMSWRRRIGKEDETIFFTSCENA 227 (244)
Q Consensus 155 ~~l~~~~~~~~l~~~l~~~~~~lk~---gG~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 227 (244)
.+++ +...+...+.++++.+.|+| ||++++........... .......+.+.........+..++.++++++
T Consensus 259 ~vlh-~~~d~~~~~~l~~~~~~L~p~~~gG~l~i~e~~~~~~~~~~~~~~~~~~~d~~~~~~~~g~~~t~~e~~~ll~~a 337 (358)
T 1zg3_A 259 WVLH-DWNDEQSLKILKNSKEAISHKGKDGKVIIIDISIDETSDDRGLTELQLDYDLVMLTMFLGKERTKQEWEKLIYDA 337 (358)
T ss_dssp SCGG-GSCHHHHHHHHHHHHHHTGGGGGGCEEEEEECEECTTCSCHHHHHHHHHHHHHHHHHHSCCCEEHHHHHHHHHHT
T ss_pred cccc-CCCHHHHHHHHHHHHHhCCCCCCCcEEEEEEeccCCCCccchhhhHHHhhCHHHhccCCCCCCCHHHHHHHHHHc
Confidence 9994 44445566999999999999 99999874443221110 0000000000000000112358999999999
Q ss_pred CCeEEEecc
Q 026036 228 GLEVKHLGS 236 (244)
Q Consensus 228 Gf~v~~~~~ 236 (244)
||+++++..
T Consensus 338 Gf~~~~~~~ 346 (358)
T 1zg3_A 338 GFSSYKITP 346 (358)
T ss_dssp TCCEEEEEE
T ss_pred CCCeeEEEe
Confidence 999887643
|
| >3dou_A Ribosomal RNA large subunit methyltransferase J; cell division, structural genomics, protein structure initiative, PSI; HET: SAM; 1.45A {Thermoplasma volcanium} SCOP: c.66.1.0 | Back alignment and structure |
|---|
Probab=99.26 E-value=2.4e-11 Score=94.10 Aligned_cols=111 Identities=15% Similarity=0.155 Sum_probs=74.2
Q ss_pred hHHHHHHHHhhccCcccCCeEEEeCCCCcHHHHHHHHhCCCeEEEEeCChHHHHHHHHHhHHhcCCCCCcceEeeecCCC
Q 026036 61 GTFSFAEWLMHHREWIERRRCIELGSGTGALAIFLRKAMNLDITTSDYNDQEIEDNIAYNSTTNGITPALPHIKHSWGDA 140 (244)
Q Consensus 61 ~~~~l~~~~~~~~~~~~~~~VLdlG~G~G~~~~~~a~~~~~~v~~~D~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 140 (244)
++..|.+.........++.+|||||||+|.++..+++. +.+|+|+|+++... . ..+..+..+..+.
T Consensus 9 a~~KL~ei~~~~~~~~~g~~VLDlG~G~G~~s~~la~~-~~~V~gvD~~~~~~------------~-~~v~~~~~D~~~~ 74 (191)
T 3dou_A 9 AAFKLEFLLDRYRVVRKGDAVIEIGSSPGGWTQVLNSL-ARKIISIDLQEMEE------------I-AGVRFIRCDIFKE 74 (191)
T ss_dssp HHHHHHHHHHHHCCSCTTCEEEEESCTTCHHHHHHTTT-CSEEEEEESSCCCC------------C-TTCEEEECCTTSS
T ss_pred HHHHHHHHHHHcCCCCCCCEEEEEeecCCHHHHHHHHc-CCcEEEEecccccc------------C-CCeEEEEccccCH
Confidence 66677777666555567899999999999999999887 88999999997410 1 1223343333221
Q ss_pred CC-------CC---CCCccEEEEcccccCCcC---------hHHHHHHHHHHHHhcCCCCceEee
Q 026036 141 FP-------IP---NPDWDLILASDILLYVKQ---------YSNLIKSLSVLLKSYKPKDSQVGH 186 (244)
Q Consensus 141 ~~-------~~---~~~fD~I~~~~~l~~~~~---------~~~l~~~l~~~~~~lk~gG~~~~~ 186 (244)
.. .. .++||+|++.... .... .......++.+.++|||||+|++.
T Consensus 75 ~~~~~~~~~~~~~~~~~~D~Vlsd~~~-~~~g~~~~d~~~~~~l~~~~l~~a~~~LkpGG~lv~k 138 (191)
T 3dou_A 75 TIFDDIDRALREEGIEKVDDVVSDAMA-KVSGIPSRDHAVSYQIGQRVMEIAVRYLRNGGNVLLK 138 (191)
T ss_dssp SHHHHHHHHHHHHTCSSEEEEEECCCC-CCCSCHHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEE
T ss_pred HHHHHHHHHhhcccCCcceEEecCCCc-CCCCCcccCHHHHHHHHHHHHHHHHHHccCCCEEEEE
Confidence 10 00 1389999996443 2111 112346788889999999998875
|
| >2pt6_A Spermidine synthase; transferase, structural genomics consor SGC,dcadoMet complex; HET: S4M 1PG; 2.00A {Plasmodium falciparum} PDB: 2pss_A* 2pt9_A* | Back alignment and structure |
|---|
Probab=99.26 E-value=2.5e-12 Score=107.52 Aligned_cols=108 Identities=14% Similarity=0.152 Sum_probs=73.0
Q ss_pred cCCeEEEeCCCCcHHHHHHHHhC-CCeEEEEeCChHHHHHHHHHhHHh--cCC-CCCcceEeeecCCCCCCCCCCccEEE
Q 026036 77 ERRRCIELGSGTGALAIFLRKAM-NLDITTSDYNDQEIEDNIAYNSTT--NGI-TPALPHIKHSWGDAFPIPNPDWDLIL 152 (244)
Q Consensus 77 ~~~~VLdlG~G~G~~~~~~a~~~-~~~v~~~D~~~~~l~~~~~~~~~~--~~~-~~~~~~~~~~~~~~~~~~~~~fD~I~ 152 (244)
++.+|||||||+|.++..+++.. ..+|+++|+++.++ +.++++... ++. ..++..+..+..+.++...++||+|+
T Consensus 116 ~~~~VLdiG~G~G~~~~~l~~~~~~~~v~~vDis~~~l-~~ar~~~~~~~~~~~~~~v~~~~~D~~~~l~~~~~~fDvIi 194 (321)
T 2pt6_A 116 EPKNVLVVGGGDGGIIRELCKYKSVENIDICEIDETVI-EVSKIYFKNISCGYEDKRVNVFIEDASKFLENVTNTYDVII 194 (321)
T ss_dssp SCCEEEEEECTTCHHHHHHTTCTTCCEEEEEESCHHHH-HHHHHHCTTTSGGGGSTTEEEEESCHHHHHHHCCSCEEEEE
T ss_pred CCCEEEEEcCCccHHHHHHHHcCCCCEEEEEECCHHHH-HHHHHHHHhhccccCCCcEEEEEccHHHHHhhcCCCceEEE
Confidence 45799999999999999998764 57999999999987 788877654 122 12333333222111222346899999
Q ss_pred EcccccCCcChHHH--HHHHHHHHHhcCCCCceEee
Q 026036 153 ASDILLYVKQYSNL--IKSLSVLLKSYKPKDSQVGH 186 (244)
Q Consensus 153 ~~~~l~~~~~~~~l--~~~l~~~~~~lk~gG~~~~~ 186 (244)
+...- .......+ .+.++.+.+.|+|||.+++.
T Consensus 195 ~d~~~-p~~~~~~l~~~~~l~~~~~~LkpgG~lv~~ 229 (321)
T 2pt6_A 195 VDSSD-PIGPAETLFNQNFYEKIYNALKPNGYCVAQ 229 (321)
T ss_dssp EECCC-SSSGGGGGSSHHHHHHHHHHEEEEEEEEEE
T ss_pred ECCcC-CCCcchhhhHHHHHHHHHHhcCCCcEEEEE
Confidence 85431 11111222 48899999999999988875
|
| >1iy9_A Spermidine synthase; rossmann fold, structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.30A {Bacillus subtilis} SCOP: c.66.1.17 | Back alignment and structure |
|---|
Probab=99.25 E-value=4.3e-12 Score=103.89 Aligned_cols=105 Identities=16% Similarity=0.153 Sum_probs=72.2
Q ss_pred cCCeEEEeCCCCcHHHHHHHHhC-CCeEEEEeCChHHHHHHHHHhHHh--cCC-CCCcceEeeecCCC---CCCCCCCcc
Q 026036 77 ERRRCIELGSGTGALAIFLRKAM-NLDITTSDYNDQEIEDNIAYNSTT--NGI-TPALPHIKHSWGDA---FPIPNPDWD 149 (244)
Q Consensus 77 ~~~~VLdlG~G~G~~~~~~a~~~-~~~v~~~D~~~~~l~~~~~~~~~~--~~~-~~~~~~~~~~~~~~---~~~~~~~fD 149 (244)
.+.+|||||||+|.++..+++.. ..+|+++|+++.++ +.++++... ++. ..++ .+..+|. ++...++||
T Consensus 75 ~~~~VLdiG~G~G~~~~~l~~~~~~~~v~~vEid~~~v-~~ar~~~~~~~~~~~~~rv---~v~~~D~~~~l~~~~~~fD 150 (275)
T 1iy9_A 75 NPEHVLVVGGGDGGVIREILKHPSVKKATLVDIDGKVI-EYSKKFLPSIAGKLDDPRV---DVQVDDGFMHIAKSENQYD 150 (275)
T ss_dssp SCCEEEEESCTTCHHHHHHTTCTTCSEEEEEESCHHHH-HHHHHHCHHHHTTTTSTTE---EEEESCSHHHHHTCCSCEE
T ss_pred CCCEEEEECCchHHHHHHHHhCCCCceEEEEECCHHHH-HHHHHHhHhhccccCCCce---EEEECcHHHHHhhCCCCee
Confidence 46799999999999999998763 57999999999987 788877543 122 1233 3333333 222346899
Q ss_pred EEEEcccccCCcChHH--HHHHHHHHHHhcCCCCceEee
Q 026036 150 LILASDILLYVKQYSN--LIKSLSVLLKSYKPKDSQVGH 186 (244)
Q Consensus 150 ~I~~~~~l~~~~~~~~--l~~~l~~~~~~lk~gG~~~~~ 186 (244)
+|++ |+......... ..+.++.+.+.|+|||.+++.
T Consensus 151 ~Ii~-d~~~~~~~~~~l~~~~~~~~~~~~L~pgG~lv~~ 188 (275)
T 1iy9_A 151 VIMV-DSTEPVGPAVNLFTKGFYAGIAKALKEDGIFVAQ 188 (275)
T ss_dssp EEEE-SCSSCCSCCCCCSTTHHHHHHHHHEEEEEEEEEE
T ss_pred EEEE-CCCCCCCcchhhhHHHHHHHHHHhcCCCcEEEEE
Confidence 9998 44322211100 137889999999999988876
|
| >3ldu_A Putative methylase; structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; HET: MSE GTP; 1.70A {Clostridium difficile} | Back alignment and structure |
|---|
Probab=99.25 E-value=3.7e-11 Score=102.81 Aligned_cols=123 Identities=13% Similarity=0.088 Sum_probs=88.1
Q ss_pred HHHHHHHHhhccCcccCCeEEEeCCCCcHHHHHHHHhCC---------------------------------------Ce
Q 026036 62 TFSFAEWLMHHREWIERRRCIELGSGTGALAIFLRKAMN---------------------------------------LD 102 (244)
Q Consensus 62 ~~~l~~~~~~~~~~~~~~~VLdlG~G~G~~~~~~a~~~~---------------------------------------~~ 102 (244)
.+.++..+.......++.+|||+|||+|.+++.++.... .+
T Consensus 180 ~e~lAa~ll~~~~~~~~~~vlDp~CGSGt~lieaa~~~~~~apg~~R~f~f~~w~~~~~~~w~~~~~~a~~~~~~~~~~~ 259 (385)
T 3ldu_A 180 RETLAAGLIYLTPWKAGRVLVDPMCGSGTILIEAAMIGINMAPGLNREFISEKWRTLDKKIWWDVRKDAFNKIDNESKFK 259 (385)
T ss_dssp CHHHHHHHHHTSCCCTTSCEEETTCTTCHHHHHHHHHHTTCCTTTTSCCGGGGCTTSCHHHHHHHHHHHHHHSCCSCCCC
T ss_pred cHHHHHHHHHhhCCCCCCeEEEcCCCCCHHHHHHHHHHhhhCCCcccccchhhcccCCHHHHHHHHHHHHHHhhccCCce
Confidence 556888877777777889999999999999998876631 57
Q ss_pred EEEEeCChHHHHHHHHHhHHhcCCCCCcceEeeecCCCCCCCCCCccEEEEcccccCCcC--hHHHHHHHHHHHHhcCC-
Q 026036 103 ITTSDYNDQEIEDNIAYNSTTNGITPALPHIKHSWGDAFPIPNPDWDLILASDILLYVKQ--YSNLIKSLSVLLKSYKP- 179 (244)
Q Consensus 103 v~~~D~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fD~I~~~~~l~~~~~--~~~l~~~l~~~~~~lk~- 179 (244)
|+|+|+++.++ +.++.|+..+++...+.....+..+. +. ..+||+|+++.++ .... ...+.+..+.+.+.+|+
T Consensus 260 V~GvDid~~ai-~~Ar~Na~~~gl~~~i~~~~~D~~~l-~~-~~~~D~Iv~NPPy-g~rl~~~~~l~~ly~~lg~~lk~~ 335 (385)
T 3ldu_A 260 IYGYDIDEESI-DIARENAEIAGVDEYIEFNVGDATQF-KS-EDEFGFIITNPPY-GERLEDKDSVKQLYKELGYAFRKL 335 (385)
T ss_dssp EEEEESCHHHH-HHHHHHHHHHTCGGGEEEEECCGGGC-CC-SCBSCEEEECCCC-CCSHHHHHHHHHHHHHHHHHHHTS
T ss_pred EEEEECCHHHH-HHHHHHHHHcCCCCceEEEECChhhc-Cc-CCCCcEEEECCCC-cCccCCHHHHHHHHHHHHHHHhhC
Confidence 99999999998 89999999888754444443333322 11 3479999999885 3221 23455666666666665
Q ss_pred -CCceEeecc
Q 026036 180 -KDSQVGHLT 188 (244)
Q Consensus 180 -gG~~~~~~~ 188 (244)
|+++++.+.
T Consensus 336 ~g~~~~iit~ 345 (385)
T 3ldu_A 336 KNWSYYLITS 345 (385)
T ss_dssp BSCEEEEEES
T ss_pred CCCEEEEEEC
Confidence 888777744
|
| >2nyu_A Putative ribosomal RNA methyltransferase 2; SAM, structural genomics, structural genomics consortium, SGC; HET: SAM; 1.76A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.25 E-value=4.8e-11 Score=92.22 Aligned_cols=113 Identities=16% Similarity=0.098 Sum_probs=72.2
Q ss_pred hHHHHHHHHhhccCcccCCeEEEeCCCCcHHHHHHHHhCC----------CeEEEEeCChHHHHHHHHHhHHhcCCCCCc
Q 026036 61 GTFSFAEWLMHHREWIERRRCIELGSGTGALAIFLRKAMN----------LDITTSDYNDQEIEDNIAYNSTTNGITPAL 130 (244)
Q Consensus 61 ~~~~l~~~~~~~~~~~~~~~VLdlG~G~G~~~~~~a~~~~----------~~v~~~D~~~~~l~~~~~~~~~~~~~~~~~ 130 (244)
++..+.+.........++.+|||||||+|.++..+++..+ .+|+++|+++.+. . ..+
T Consensus 6 ~~~kl~~l~~~~~~~~~~~~vLDlGcG~G~~~~~la~~~~~~~~~~~~~~~~v~~vD~s~~~~------------~-~~~ 72 (196)
T 2nyu_A 6 SAFKLLEVNERHQILRPGLRVLDCGAAPGAWSQVAVQKVNAAGTDPSSPVGFVLGVDLLHIFP------------L-EGA 72 (196)
T ss_dssp HHHHHHHHHHHHCCCCTTCEEEEETCCSCHHHHHHHHHTTTTCCCTTSCCCEEEEECSSCCCC------------C-TTC
T ss_pred HHHHHHHHHHhcCCCCCCCEEEEeCCCCCHHHHHHHHHhccccccccCCCceEEEEechhccc------------C-CCC
Confidence 4555555555444456788999999999999999998853 7899999998420 1 111
Q ss_pred ceE-eeecCCCC-------CCCCCCccEEEEcccccCCcCh-HH-------HHHHHHHHHHhcCCCCceEee
Q 026036 131 PHI-KHSWGDAF-------PIPNPDWDLILASDILLYVKQY-SN-------LIKSLSVLLKSYKPKDSQVGH 186 (244)
Q Consensus 131 ~~~-~~~~~~~~-------~~~~~~fD~I~~~~~l~~~~~~-~~-------l~~~l~~~~~~lk~gG~~~~~ 186 (244)
..+ ..+..+.. ...+++||+|++..++...... .+ ....++++.++|||||++++.
T Consensus 73 ~~~~~~d~~~~~~~~~~~~~~~~~~fD~V~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~lv~~ 144 (196)
T 2nyu_A 73 TFLCPADVTDPRTSQRILEVLPGRRADVILSDMAPNATGFRDLDHDRLISLCLTLLSVTPDILQPGGTFLCK 144 (196)
T ss_dssp EEECSCCTTSHHHHHHHHHHSGGGCEEEEEECCCCCCCSCHHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEE
T ss_pred eEEEeccCCCHHHHHHHHHhcCCCCCcEEEeCCCCCCCCCcccCHHHHHHHHHHHHHHHHHHhcCCCEEEEE
Confidence 222 22211110 0123479999996644211111 11 147889999999999998876
|
| >2f8l_A Hypothetical protein LMO1582; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE SAM; 2.20A {Listeria monocytogenes} SCOP: c.66.1.45 | Back alignment and structure |
|---|
Probab=99.25 E-value=2.2e-11 Score=102.75 Aligned_cols=106 Identities=9% Similarity=0.034 Sum_probs=76.7
Q ss_pred ccCCeEEEeCCCCcHHHHHHHHhCC------CeEEEEeCChHHHHHHHHHhHHhcCCCCCcceEeeecCCCCC-CCCCCc
Q 026036 76 IERRRCIELGSGTGALAIFLRKAMN------LDITTSDYNDQEIEDNIAYNSTTNGITPALPHIKHSWGDAFP-IPNPDW 148 (244)
Q Consensus 76 ~~~~~VLdlG~G~G~~~~~~a~~~~------~~v~~~D~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~f 148 (244)
.++.+|||+|||+|.+++.+++... .+++|+|+++.++ +.++.|+..+++ .+ .+..++.+. ...++|
T Consensus 129 ~~~~~VlDp~cGsG~~l~~~~~~~~~~~~~~~~v~GiDi~~~~~-~~a~~n~~~~g~--~~---~i~~~D~l~~~~~~~f 202 (344)
T 2f8l_A 129 KKNVSILDPACGTANLLTTVINQLELKGDVDVHASGVDVDDLLI-SLALVGADLQRQ--KM---TLLHQDGLANLLVDPV 202 (344)
T ss_dssp CSEEEEEETTCTTSHHHHHHHHHHHTTSSCEEEEEEEESCHHHH-HHHHHHHHHHTC--CC---EEEESCTTSCCCCCCE
T ss_pred CCCCEEEeCCCCccHHHHHHHHHHHHhcCCCceEEEEECCHHHH-HHHHHHHHhCCC--Cc---eEEECCCCCccccCCc
Confidence 3567999999999999998877652 6899999999987 888888877665 22 233333332 234689
Q ss_pred cEEEEcccccCCcChHH---------------H-HHHHHHHHHhcCCCCceEeecc
Q 026036 149 DLILASDILLYVKQYSN---------------L-IKSLSVLLKSYKPKDSQVGHLT 188 (244)
Q Consensus 149 D~I~~~~~l~~~~~~~~---------------l-~~~l~~~~~~lk~gG~~~~~~~ 188 (244)
|+|+++.++ ....... . ...++.+.+.|+|||+++++++
T Consensus 203 D~Ii~NPPf-g~~~~~~~~~~~~~~~~~g~~~~~~~~l~~~~~~Lk~gG~~~~v~p 257 (344)
T 2f8l_A 203 DVVISDLPV-GYYPDDENAKTFELCREEGHSFAHFLFIEQGMRYTKPGGYLFFLVP 257 (344)
T ss_dssp EEEEEECCC-SEESCHHHHTTSTTCCSSSCEEHHHHHHHHHHHTEEEEEEEEEEEE
T ss_pred cEEEECCCC-CCcCchhhhhhccccCCCCcchHHHHHHHHHHHHhCCCCEEEEEEC
Confidence 999999885 2211111 1 2578899999999999888743
|
| >1inl_A Spermidine synthase; beta-barrel, rossman fold, structural genomics, PSI, protein structure initiative; 1.50A {Thermotoga maritima} SCOP: c.66.1.17 PDB: 1jq3_A* | Back alignment and structure |
|---|
Probab=99.25 E-value=4.3e-12 Score=104.94 Aligned_cols=108 Identities=10% Similarity=0.058 Sum_probs=70.8
Q ss_pred cCCeEEEeCCCCcHHHHHHHHhC-CCeEEEEeCChHHHHHHHHHhHHh--cCC-CCCcceEeeecCCCCCCCCCCccEEE
Q 026036 77 ERRRCIELGSGTGALAIFLRKAM-NLDITTSDYNDQEIEDNIAYNSTT--NGI-TPALPHIKHSWGDAFPIPNPDWDLIL 152 (244)
Q Consensus 77 ~~~~VLdlG~G~G~~~~~~a~~~-~~~v~~~D~~~~~l~~~~~~~~~~--~~~-~~~~~~~~~~~~~~~~~~~~~fD~I~ 152 (244)
.+.+|||||||+|..+..+++.. ..+|+++|+++.++ +.++++... ++. ..++..+..+..+.++...++||+|+
T Consensus 90 ~~~~VLdiG~G~G~~~~~l~~~~~~~~v~~vDid~~~~-~~a~~~~~~~~~~~~~~~v~~~~~D~~~~l~~~~~~fD~Ii 168 (296)
T 1inl_A 90 NPKKVLIIGGGDGGTLREVLKHDSVEKAILCEVDGLVI-EAARKYLKQTSCGFDDPRAEIVIANGAEYVRKFKNEFDVII 168 (296)
T ss_dssp SCCEEEEEECTTCHHHHHHTTSTTCSEEEEEESCHHHH-HHHHHHCHHHHGGGGCTTEEEEESCHHHHGGGCSSCEEEEE
T ss_pred CCCEEEEEcCCcCHHHHHHHhcCCCCEEEEEECCHHHH-HHHHHHhHhhccccCCCceEEEECcHHHHHhhCCCCceEEE
Confidence 45799999999999999998764 57999999999987 778777543 222 12333333322112222346899999
Q ss_pred EcccccC-CcChHH--HHHHHHHHHHhcCCCCceEee
Q 026036 153 ASDILLY-VKQYSN--LIKSLSVLLKSYKPKDSQVGH 186 (244)
Q Consensus 153 ~~~~l~~-~~~~~~--l~~~l~~~~~~lk~gG~~~~~ 186 (244)
+...- . ...... ..+.++.+.+.|+|||.+++.
T Consensus 169 ~d~~~-~~~~~~~~l~~~~~l~~~~~~LkpgG~lv~~ 204 (296)
T 1inl_A 169 IDSTD-PTAGQGGHLFTEEFYQACYDALKEDGVFSAE 204 (296)
T ss_dssp EEC-----------CCSHHHHHHHHHHEEEEEEEEEE
T ss_pred EcCCC-cccCchhhhhHHHHHHHHHHhcCCCcEEEEE
Confidence 84321 1 111111 147889999999999988876
|
| >2h1r_A Dimethyladenosine transferase, putative; SGC toronto dimethyladenosine transferase, structural genomics, structural genomics consortium; 1.89A {Plasmodium falciparum} | Back alignment and structure |
|---|
Probab=99.25 E-value=5.4e-11 Score=98.45 Aligned_cols=110 Identities=16% Similarity=0.200 Sum_probs=74.1
Q ss_pred HHHHHhhccCcccCCeEEEeCCCCcHHHHHHHHhCCCeEEEEeCChHHHHHHHHHhHHhcCCCCCcceEeeecCCCCCCC
Q 026036 65 FAEWLMHHREWIERRRCIELGSGTGALAIFLRKAMNLDITTSDYNDQEIEDNIAYNSTTNGITPALPHIKHSWGDAFPIP 144 (244)
Q Consensus 65 l~~~~~~~~~~~~~~~VLdlG~G~G~~~~~~a~~~~~~v~~~D~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 144 (244)
+.+.+.......++.+|||+|||+|.++..+++. +.+|+++|+++.++ +.++++...++. . .+.+..+|.....
T Consensus 30 i~~~i~~~~~~~~~~~VLDiG~G~G~lt~~La~~-~~~v~~vDi~~~~~-~~a~~~~~~~~~-~---~v~~~~~D~~~~~ 103 (299)
T 2h1r_A 30 ILDKIIYAAKIKSSDIVLEIGCGTGNLTVKLLPL-AKKVITIDIDSRMI-SEVKKRCLYEGY-N---NLEVYEGDAIKTV 103 (299)
T ss_dssp HHHHHHHHHCCCTTCEEEEECCTTSTTHHHHTTT-SSEEEEECSCHHHH-HHHHHHHHHTTC-C---CEEC----CCSSC
T ss_pred HHHHHHHhcCCCCcCEEEEEcCcCcHHHHHHHhc-CCEEEEEECCHHHH-HHHHHHHHHcCC-C---ceEEEECchhhCC
Confidence 3444444445567889999999999999999876 67999999999987 788887765554 2 2333344444444
Q ss_pred CCCccEEEEcccccCCcChHHHHHHH---------------HHHHHhcCCCCc
Q 026036 145 NPDWDLILASDILLYVKQYSNLIKSL---------------SVLLKSYKPKDS 182 (244)
Q Consensus 145 ~~~fD~I~~~~~l~~~~~~~~l~~~l---------------~~~~~~lk~gG~ 182 (244)
.++||+|+++.+. +. ..+.+.+.+ +.+.++++++|.
T Consensus 104 ~~~~D~Vv~n~py-~~-~~~~~~~ll~~~~~~~~~~l~~Q~e~a~rlla~~G~ 154 (299)
T 2h1r_A 104 FPKFDVCTANIPY-KI-SSPLIFKLISHRPLFKCAVLMFQKEFAERMLANVGD 154 (299)
T ss_dssp CCCCSEEEEECCG-GG-HHHHHHHHHHCSSCCSEEEEEEEHHHHHHHTCCTTS
T ss_pred cccCCEEEEcCCc-cc-ccHHHHHHHhcCCccceeeehHHHHHHHHHhcCCCC
Confidence 4589999997664 43 233334444 346688888774
|
| >1mjf_A Spermidine synthase; spermidine synthetase, structural genomics, PSI, protein structure initiative; 1.80A {Pyrococcus furiosus} SCOP: c.66.1.17 PDB: 2e5w_A* 2zsu_A* | Back alignment and structure |
|---|
Probab=99.24 E-value=3.3e-12 Score=104.87 Aligned_cols=104 Identities=16% Similarity=0.176 Sum_probs=70.5
Q ss_pred cCCeEEEeCCCCcHHHHHHHHhCCCeEEEEeCChHHHHHHHHHhHHhc-CC--------CCCcceEeeecCCCC---CCC
Q 026036 77 ERRRCIELGSGTGALAIFLRKAMNLDITTSDYNDQEIEDNIAYNSTTN-GI--------TPALPHIKHSWGDAF---PIP 144 (244)
Q Consensus 77 ~~~~VLdlG~G~G~~~~~~a~~~~~~v~~~D~~~~~l~~~~~~~~~~~-~~--------~~~~~~~~~~~~~~~---~~~ 144 (244)
++.+|||||||+|.++..+++....+|+++|+++.++ +.++++...+ ++ ..+ +.+..+|.. ..
T Consensus 75 ~~~~VLdiG~G~G~~~~~l~~~~~~~v~~vDid~~~i-~~ar~~~~~~~~l~~~~~~~~~~~---v~~~~~D~~~~l~~- 149 (281)
T 1mjf_A 75 KPKRVLVIGGGDGGTVREVLQHDVDEVIMVEIDEDVI-MVSKDLIKIDNGLLEAMLNGKHEK---AKLTIGDGFEFIKN- 149 (281)
T ss_dssp CCCEEEEEECTTSHHHHHHTTSCCSEEEEEESCHHHH-HHHHHHTCTTTTHHHHHHTTCCSS---EEEEESCHHHHHHH-
T ss_pred CCCeEEEEcCCcCHHHHHHHhCCCCEEEEEECCHHHH-HHHHHHHhhccccccccccCCCCc---EEEEECchHHHhcc-
Confidence 5679999999999999999877456899999999987 7887776111 11 122 333333321 12
Q ss_pred CCCccEEEEcccccCCcChHHH--HHHHHHHHHhcCCCCceEee
Q 026036 145 NPDWDLILASDILLYVKQYSNL--IKSLSVLLKSYKPKDSQVGH 186 (244)
Q Consensus 145 ~~~fD~I~~~~~l~~~~~~~~l--~~~l~~~~~~lk~gG~~~~~ 186 (244)
.++||+|++.... .......+ .+.++.+.+.|+|||.+++.
T Consensus 150 ~~~fD~Ii~d~~~-~~~~~~~l~~~~~l~~~~~~L~pgG~lv~~ 192 (281)
T 1mjf_A 150 NRGFDVIIADSTD-PVGPAKVLFSEEFYRYVYDALNNPGIYVTQ 192 (281)
T ss_dssp CCCEEEEEEECCC-CC-----TTSHHHHHHHHHHEEEEEEEEEE
T ss_pred cCCeeEEEECCCC-CCCcchhhhHHHHHHHHHHhcCCCcEEEEE
Confidence 4689999985442 22111222 47889999999999988775
|
| >3k0b_A Predicted N6-adenine-specific DNA methylase; methylase,PF01170, putative RNA methylase, PSI,MCSG, structu genomics; 1.50A {Listeria monocytogenes str} | Back alignment and structure |
|---|
Probab=99.24 E-value=7.2e-11 Score=101.20 Aligned_cols=123 Identities=15% Similarity=0.123 Sum_probs=87.5
Q ss_pred HHHHHHHHhhccCcccCCeEEEeCCCCcHHHHHHHHhCC---------------------------------------Ce
Q 026036 62 TFSFAEWLMHHREWIERRRCIELGSGTGALAIFLRKAMN---------------------------------------LD 102 (244)
Q Consensus 62 ~~~l~~~~~~~~~~~~~~~VLdlG~G~G~~~~~~a~~~~---------------------------------------~~ 102 (244)
.+.++..+.......++.+|||.+||+|.+.+.++.... .+
T Consensus 186 ~e~lAa~ll~l~~~~~~~~vlDp~CGSGt~~ieaa~~~~~~apg~~R~f~f~~w~~~~~~~w~~~~~~a~~~~~~~~~~~ 265 (393)
T 3k0b_A 186 KETMAAALVLLTSWHPDRPFYDPVCGSGTIPIEAALIGQNIAPGFNREFVSETWDWMPKQVWADARQEAEDLANYDQPLN 265 (393)
T ss_dssp CHHHHHHHHHHSCCCTTSCEEETTCTTSHHHHHHHHHHTTCCTTTTSCCGGGGCTTSCHHHHHHHHHHHHHHCCTTCCCC
T ss_pred cHHHHHHHHHHhCCCCCCeEEEcCCCCCHHHHHHHHHhcCcCCCccccchhhccccCCHHHHHHHHHHHHHhhcccCCce
Confidence 556777777766667888999999999999988876542 45
Q ss_pred EEEEeCChHHHHHHHHHhHHhcCCCCCcceEeeecCCCCCCCCCCccEEEEcccccCCcC--hHHHHHHHHHHHHhcCC-
Q 026036 103 ITTSDYNDQEIEDNIAYNSTTNGITPALPHIKHSWGDAFPIPNPDWDLILASDILLYVKQ--YSNLIKSLSVLLKSYKP- 179 (244)
Q Consensus 103 v~~~D~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fD~I~~~~~l~~~~~--~~~l~~~l~~~~~~lk~- 179 (244)
|+|+|+++.++ +.++.|+..+++...+..+..+..+. +. ..+||+|+++.++ .... ...+....+.+.+.+|+
T Consensus 266 V~GvDid~~al-~~Ar~Na~~~gl~~~I~~~~~D~~~~-~~-~~~fD~Iv~NPPY-g~rl~~~~~l~~ly~~lg~~lk~~ 341 (393)
T 3k0b_A 266 IIGGDIDARLI-EIAKQNAVEAGLGDLITFRQLQVADF-QT-EDEYGVVVANPPY-GERLEDEEAVRQLYREMGIVYKRM 341 (393)
T ss_dssp EEEEESCHHHH-HHHHHHHHHTTCTTCSEEEECCGGGC-CC-CCCSCEEEECCCC-CCSHHHHHHHHHHHHHHHHHHHTC
T ss_pred EEEEECCHHHH-HHHHHHHHHcCCCCceEEEECChHhC-CC-CCCCCEEEECCCC-ccccCCchhHHHHHHHHHHHHhcC
Confidence 99999999998 89999999988865555555444332 22 3489999998885 3221 13344455555555554
Q ss_pred -CCceEeecc
Q 026036 180 -KDSQVGHLT 188 (244)
Q Consensus 180 -gG~~~~~~~ 188 (244)
||++++.+.
T Consensus 342 ~g~~~~iit~ 351 (393)
T 3k0b_A 342 PTWSVYVLTS 351 (393)
T ss_dssp TTCEEEEEEC
T ss_pred CCCEEEEEEC
Confidence 888888744
|
| >2p41_A Type II methyltransferase; vizier, viral enzymes involved in replication, dengue virus methyltransferase, structural genomics; HET: G1G SAH CIT; 1.80A {Dengue virus 2} SCOP: c.66.1.25 PDB: 2p1d_A* 1l9k_A* 2p3o_A* 2p3q_A* 2p40_A* 2p3l_A* 1r6a_A* | Back alignment and structure |
|---|
Probab=99.22 E-value=3.6e-11 Score=99.68 Aligned_cols=118 Identities=12% Similarity=0.144 Sum_probs=74.9
Q ss_pred chHHHHHHHHhhccCcccCCeEEEeCCCCcHHHHHHHHhCCCeEEEEeC----ChHHHHHHHHHhHHhcCCCCCcceEee
Q 026036 60 PGTFSFAEWLMHHREWIERRRCIELGSGTGALAIFLRKAMNLDITTSDY----NDQEIEDNIAYNSTTNGITPALPHIKH 135 (244)
Q Consensus 60 ~~~~~l~~~~~~~~~~~~~~~VLdlG~G~G~~~~~~a~~~~~~v~~~D~----~~~~l~~~~~~~~~~~~~~~~~~~~~~ 135 (244)
.++..|.+.+.. ....++.+|||||||+|.++..+++. .+|+++|+ ++.++ +.. ..... ....+.+
T Consensus 66 R~a~KL~~i~~~-~~~~~g~~VLDlGcG~G~~s~~la~~--~~V~gvD~~~~~~~~~~-~~~----~~~~~--~~~~v~~ 135 (305)
T 2p41_A 66 RGSAKLRWFVER-NLVTPEGKVVDLGCGRGGWSYYCGGL--KNVREVKGLTKGGPGHE-EPI----PMSTY--GWNLVRL 135 (305)
T ss_dssp THHHHHHHHHHT-TSSCCCEEEEEETCTTSHHHHHHHTS--TTEEEEEEECCCSTTSC-CCC----CCCST--TGGGEEE
T ss_pred cHHHHHHHHHHc-CCCCCCCEEEEEcCCCCHHHHHHHhc--CCEEEEeccccCchhHH-HHH----Hhhhc--CCCCeEE
Confidence 366667665554 44457889999999999999999876 58999999 45332 111 00111 0123344
Q ss_pred ecC-CCCCCCCCCccEEEEcccccCCcC----hHHHHHHHHHHHHhcCCCCceEeecc
Q 026036 136 SWG-DAFPIPNPDWDLILASDILLYVKQ----YSNLIKSLSVLLKSYKPKDSQVGHLT 188 (244)
Q Consensus 136 ~~~-~~~~~~~~~fD~I~~~~~l~~~~~----~~~l~~~l~~~~~~lk~gG~~~~~~~ 188 (244)
..+ +....+.++||+|+|..++ .... ......++..+.++|||||.|++.+.
T Consensus 136 ~~~~D~~~l~~~~fD~V~sd~~~-~~g~~~~d~~~~l~~L~~~~~~LkpGG~~v~kv~ 192 (305)
T 2p41_A 136 QSGVDVFFIPPERCDTLLCDIGE-SSPNPTVEAGRTLRVLNLVENWLSNNTQFCVKVL 192 (305)
T ss_dssp ECSCCTTTSCCCCCSEEEECCCC-CCSSHHHHHHHHHHHHHHHHHHCCTTCEEEEEES
T ss_pred EeccccccCCcCCCCEEEECCcc-ccCcchhhHHHHHHHHHHHHHHhCCCCEEEEEeC
Confidence 444 5444455689999995543 2111 11122578888999999998887643
|
| >3ldg_A Putative uncharacterized protein SMU.472; YPSC, methyltransferase, transferase; HET: SAH; 1.96A {Streptococcus mutans} | Back alignment and structure |
|---|
Probab=99.22 E-value=1.6e-10 Score=98.66 Aligned_cols=123 Identities=13% Similarity=0.139 Sum_probs=89.8
Q ss_pred HHHHHHHHhhccCcccCCeEEEeCCCCcHHHHHHHHhCC---------------------------------------Ce
Q 026036 62 TFSFAEWLMHHREWIERRRCIELGSGTGALAIFLRKAMN---------------------------------------LD 102 (244)
Q Consensus 62 ~~~l~~~~~~~~~~~~~~~VLdlG~G~G~~~~~~a~~~~---------------------------------------~~ 102 (244)
.+.|+..+.......++..|||.+||+|.+.+.++.... .+
T Consensus 179 ~e~LAaall~l~~~~~~~~llDp~CGSGt~lIEAa~~a~~iapg~~R~f~f~~w~~~~~~~w~~~~~~a~~~~~~~~~~~ 258 (384)
T 3ldg_A 179 KENMAAAIILLSNWFPDKPFVDPTCGSGTFCIEAAMIGMNIAPGFNRDFAFEEWPWVDEALVTRVRNEADEQADYDIQLD 258 (384)
T ss_dssp CHHHHHHHHHHTTCCTTSCEEETTCTTSHHHHHHHHHHTTCCTTTTCCCGGGGCTTSCHHHHHHHHHHHHHHCCTTCCCC
T ss_pred cHHHHHHHHHHhCCCCCCeEEEeCCcCCHHHHHHHHHhcCcCCCccccchhhhhccCCHHHHHHHHHHHHHhhhccCCce
Confidence 467887777776667888999999999999988876532 45
Q ss_pred EEEEeCChHHHHHHHHHhHHhcCCCCCcceEeeecCCCCCCCCCCccEEEEcccccCCc--ChHHHHHHHHHHHHhcCC-
Q 026036 103 ITTSDYNDQEIEDNIAYNSTTNGITPALPHIKHSWGDAFPIPNPDWDLILASDILLYVK--QYSNLIKSLSVLLKSYKP- 179 (244)
Q Consensus 103 v~~~D~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fD~I~~~~~l~~~~--~~~~l~~~l~~~~~~lk~- 179 (244)
|+|+|+++.++ +.++.|+..+++...+..+..+..+. +. ..+||+|+++.++ ... ...++.+..+.+.+.+|+
T Consensus 259 v~GvDid~~al-~~Ar~Na~~~gl~~~I~~~~~D~~~l-~~-~~~fD~Iv~NPPY-G~rl~~~~~l~~ly~~lg~~lk~~ 334 (384)
T 3ldg_A 259 ISGFDFDGRMV-EIARKNAREVGLEDVVKLKQMRLQDF-KT-NKINGVLISNPPY-GERLLDDKAVDILYNEMGETFAPL 334 (384)
T ss_dssp EEEEESCHHHH-HHHHHHHHHTTCTTTEEEEECCGGGC-CC-CCCSCEEEECCCC-TTTTSCHHHHHHHHHHHHHHHTTC
T ss_pred EEEEECCHHHH-HHHHHHHHHcCCCCceEEEECChHHC-Cc-cCCcCEEEECCch-hhccCCHHHHHHHHHHHHHHHhhC
Confidence 99999999998 89999999988865555554444332 22 2479999998885 322 224555666666677766
Q ss_pred -CCceEeecc
Q 026036 180 -KDSQVGHLT 188 (244)
Q Consensus 180 -gG~~~~~~~ 188 (244)
||++++.+.
T Consensus 335 ~g~~~~iit~ 344 (384)
T 3ldg_A 335 KTWSQFILTN 344 (384)
T ss_dssp TTSEEEEEES
T ss_pred CCcEEEEEEC
Confidence 888887744
|
| >2o07_A Spermidine synthase; structural genomics, structural genomics consortium, SGC, transferase; HET: SPD MTA; 1.89A {Homo sapiens} SCOP: c.66.1.17 PDB: 2o06_A* 2o05_A* 2o0l_A* 3rw9_A* | Back alignment and structure |
|---|
Probab=99.22 E-value=5.4e-12 Score=104.67 Aligned_cols=108 Identities=10% Similarity=0.049 Sum_probs=71.0
Q ss_pred cCCeEEEeCCCCcHHHHHHHHhC-CCeEEEEeCChHHHHHHHHHhHHh--cCC-CCCcceEeeecCCCCCCCCCCccEEE
Q 026036 77 ERRRCIELGSGTGALAIFLRKAM-NLDITTSDYNDQEIEDNIAYNSTT--NGI-TPALPHIKHSWGDAFPIPNPDWDLIL 152 (244)
Q Consensus 77 ~~~~VLdlG~G~G~~~~~~a~~~-~~~v~~~D~~~~~l~~~~~~~~~~--~~~-~~~~~~~~~~~~~~~~~~~~~fD~I~ 152 (244)
++.+|||||||+|..+..+++.. ..+|+++|+++.++ +.++++... +++ ..++..+..+..+.++...++||+|+
T Consensus 95 ~~~~VLdiG~G~G~~~~~l~~~~~~~~v~~vDid~~~i-~~ar~~~~~~~~~~~~~rv~v~~~Da~~~l~~~~~~fD~Ii 173 (304)
T 2o07_A 95 NPRKVLIIGGGDGGVLREVVKHPSVESVVQCEIDEDVI-QVSKKFLPGMAIGYSSSKLTLHVGDGFEFMKQNQDAFDVII 173 (304)
T ss_dssp SCCEEEEEECTTSHHHHHHTTCTTCCEEEEEESCHHHH-HHHHHHCHHHHGGGGCTTEEEEESCHHHHHHTCSSCEEEEE
T ss_pred CCCEEEEECCCchHHHHHHHHcCCCCEEEEEECCHHHH-HHHHHHhHHhhcccCCCcEEEEECcHHHHHhhCCCCceEEE
Confidence 56799999999999999998764 47899999999987 778777543 222 12333332222111223356899999
Q ss_pred EcccccCCcChH--HHHHHHHHHHHhcCCCCceEee
Q 026036 153 ASDILLYVKQYS--NLIKSLSVLLKSYKPKDSQVGH 186 (244)
Q Consensus 153 ~~~~l~~~~~~~--~l~~~l~~~~~~lk~gG~~~~~ 186 (244)
+.... ...... ...+.++.+.+.|+|||.+++.
T Consensus 174 ~d~~~-~~~~~~~l~~~~~l~~~~~~LkpgG~lv~~ 208 (304)
T 2o07_A 174 TDSSD-PMGPAESLFKESYYQLMKTALKEDGVLCCQ 208 (304)
T ss_dssp EECC------------CHHHHHHHHHEEEEEEEEEE
T ss_pred ECCCC-CCCcchhhhHHHHHHHHHhccCCCeEEEEe
Confidence 84332 211111 1236889999999999988876
|
| >2ld4_A Anamorsin; methyltransferase-like fold, alpha/beta fold, iron-sulfur PR biogenesis, apoptosis; NMR {Homo sapiens} PDB: 2yui_A | Back alignment and structure |
|---|
Probab=99.22 E-value=2.1e-11 Score=92.87 Aligned_cols=119 Identities=8% Similarity=-0.002 Sum_probs=79.3
Q ss_pred CcccCCeEEEeCCCCcHHHHHHHHhCCCeEEEEeCChHHHHHHHHHhHHhcCCCCCcceEeeecCCCCCC---CCCCccE
Q 026036 74 EWIERRRCIELGSGTGALAIFLRKAMNLDITTSDYNDQEIEDNIAYNSTTNGITPALPHIKHSWGDAFPI---PNPDWDL 150 (244)
Q Consensus 74 ~~~~~~~VLdlG~G~G~~~~~~a~~~~~~v~~~D~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~fD~ 150 (244)
...+|.+|||||||. +.+|+|+.|+ +.++++...+ +..+..+..+ ++. .+++||+
T Consensus 9 g~~~g~~vL~~~~g~---------------v~vD~s~~ml-~~a~~~~~~~-----~~~~~~d~~~-~~~~~~~~~~fD~ 66 (176)
T 2ld4_A 9 GISAGQFVAVVWDKS---------------SPVEALKGLV-DKLQALTGNE-----GRVSVENIKQ-LLQSAHKESSFDI 66 (176)
T ss_dssp TCCTTSEEEEEECTT---------------SCHHHHHHHH-HHHHHHTTTT-----SEEEEEEGGG-GGGGCCCSSCEEE
T ss_pred CCCCCCEEEEecCCc---------------eeeeCCHHHH-HHHHHhcccC-----cEEEEechhc-CccccCCCCCEeE
Confidence 456889999999996 2389999998 6666654321 3344444432 333 5678999
Q ss_pred EEEcccccCCcChHHHHHHHHHHHHhcCCCCceEeecccccCCCCCCCCCCCeEEEeeeeccCccchhhHHHHHhhcCCe
Q 026036 151 ILASDILLYVKQYSNLIKSLSVLLKSYKPKDSQVGHLTKNEQGEGTEGLPWPAFLMSWRRRIGKEDETIFFTSCENAGLE 230 (244)
Q Consensus 151 I~~~~~l~~~~~~~~l~~~l~~~~~~lk~gG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gf~ 230 (244)
|+++.++++.. ++..+++++++++|||||++++..+...... . ..+. .+..++.+.++++||
T Consensus 67 V~~~~~l~~~~--~~~~~~l~~~~r~LkpgG~l~~~~~~~~~~~------~--------~~~~-~~~~~~~~~l~~aGf- 128 (176)
T 2ld4_A 67 ILSGLVPGSTT--LHSAEILAEIARILRPGGCLFLKEPVETAVD------N--------NSKV-KTASKLCSALTLSGL- 128 (176)
T ss_dssp EEECCSTTCCC--CCCHHHHHHHHHHEEEEEEEEEEEEEESSSC------S--------SSSS-CCHHHHHHHHHHTTC-
T ss_pred EEECChhhhcc--cCHHHHHHHHHHHCCCCEEEEEEcccccccc------c--------cccc-CCHHHHHHHHHHCCC-
Confidence 99999984430 2335899999999999999998633221100 0 1111 124788999999999
Q ss_pred EE
Q 026036 231 VK 232 (244)
Q Consensus 231 v~ 232 (244)
++
T Consensus 129 i~ 130 (176)
T 2ld4_A 129 VE 130 (176)
T ss_dssp EE
T ss_pred cE
Confidence 65
|
| >2b2c_A Spermidine synthase; beta-alpha, transferase; 2.50A {Caenorhabditis elegans} SCOP: c.66.1.17 | Back alignment and structure |
|---|
Probab=99.22 E-value=4.6e-12 Score=105.51 Aligned_cols=105 Identities=19% Similarity=0.238 Sum_probs=69.5
Q ss_pred cCCeEEEeCCCCcHHHHHHHHhC-CCeEEEEeCChHHHHHHHHHhHHhc--CC-CCCcceEeeecCCCC---CCCCCCcc
Q 026036 77 ERRRCIELGSGTGALAIFLRKAM-NLDITTSDYNDQEIEDNIAYNSTTN--GI-TPALPHIKHSWGDAF---PIPNPDWD 149 (244)
Q Consensus 77 ~~~~VLdlG~G~G~~~~~~a~~~-~~~v~~~D~~~~~l~~~~~~~~~~~--~~-~~~~~~~~~~~~~~~---~~~~~~fD 149 (244)
++.+|||||||+|..+..+++.. ..+|+++|+++.++ +.++++.... +. ..++ .+..++.. +...++||
T Consensus 108 ~~~~VLdIG~G~G~~~~~l~~~~~~~~v~~vDid~~~i-~~Ar~~~~~~~~~~~~~rv---~~~~~D~~~~l~~~~~~fD 183 (314)
T 2b2c_A 108 DPKRVLIIGGGDGGILREVLKHESVEKVTMCEIDEMVI-DVAKKFLPGMSCGFSHPKL---DLFCGDGFEFLKNHKNEFD 183 (314)
T ss_dssp SCCEEEEESCTTSHHHHHHTTCTTCCEEEEECSCHHHH-HHHHHHCTTTSGGGGCTTE---EEECSCHHHHHHHCTTCEE
T ss_pred CCCEEEEEcCCcCHHHHHHHHcCCCCEEEEEECCHHHH-HHHHHHHHHhccccCCCCE---EEEEChHHHHHHhcCCCce
Confidence 45799999999999999998764 57999999999987 7888776432 11 1223 33333322 22356899
Q ss_pred EEEEcccccCCcChHHH--HHHHHHHHHhcCCCCceEee
Q 026036 150 LILASDILLYVKQYSNL--IKSLSVLLKSYKPKDSQVGH 186 (244)
Q Consensus 150 ~I~~~~~l~~~~~~~~l--~~~l~~~~~~lk~gG~~~~~ 186 (244)
+|++...- .......+ ...++.+.+.|+|||.+++.
T Consensus 184 ~Ii~d~~~-~~~~~~~l~t~~~l~~~~~~LkpgG~lv~~ 221 (314)
T 2b2c_A 184 VIITDSSD-PVGPAESLFGQSYYELLRDALKEDGILSSQ 221 (314)
T ss_dssp EEEECCC--------------HHHHHHHHEEEEEEEEEE
T ss_pred EEEEcCCC-CCCcchhhhHHHHHHHHHhhcCCCeEEEEE
Confidence 99984432 11111122 58899999999999988876
|
| >2frx_A Hypothetical protein YEBU; rossmann-type S-adenosylmethionine-dependent methyltransfera domain; 2.90A {Escherichia coli} | Back alignment and structure |
|---|
Probab=99.22 E-value=1.6e-10 Score=101.41 Aligned_cols=106 Identities=12% Similarity=0.150 Sum_probs=76.2
Q ss_pred cCCeEEEeCCCCcHHHHHHHHhC--CCeEEEEeCChHHHHHHHHHhHHhcCCCCCcceEeeecCCCCCC---CCCCccEE
Q 026036 77 ERRRCIELGSGTGALAIFLRKAM--NLDITTSDYNDQEIEDNIAYNSTTNGITPALPHIKHSWGDAFPI---PNPDWDLI 151 (244)
Q Consensus 77 ~~~~VLdlG~G~G~~~~~~a~~~--~~~v~~~D~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~fD~I 151 (244)
++.+|||+|||+|..+..++... ..+|+++|+++.++ +.+++|+..+++. + +.+..++.... ..++||.|
T Consensus 117 ~g~~VLDl~aGpG~kt~~lA~~~~~~g~V~avDis~~~l-~~~~~n~~r~g~~-n---v~~~~~D~~~~~~~~~~~fD~I 191 (479)
T 2frx_A 117 APQRVMDVAAAPGSKTTQISARMNNEGAILANEFSASRV-KVLHANISRCGIS-N---VALTHFDGRVFGAAVPEMFDAI 191 (479)
T ss_dssp CCSEEEESSCTTSHHHHHHHHHTTTCSEEEEECSSHHHH-HHHHHHHHHHTCC-S---EEEECCCSTTHHHHSTTCEEEE
T ss_pred CCCEEEEeCCCCCHHHHHHHHhCCCCCEEEEEECCHHHH-HHHHHHHHHcCCC-c---EEEEeCCHHHhhhhccccCCEE
Confidence 78899999999999999999875 47899999999987 8888998887763 2 33333333221 34689999
Q ss_pred EEcccc------cCCcC------h-------HHHHHHHHHHHHhcCCCCceEeec
Q 026036 152 LASDIL------LYVKQ------Y-------SNLIKSLSVLLKSYKPKDSQVGHL 187 (244)
Q Consensus 152 ~~~~~l------~~~~~------~-------~~l~~~l~~~~~~lk~gG~~~~~~ 187 (244)
++..+. ..... . ....+.++++.++|||||++++++
T Consensus 192 l~D~PcSg~G~~~~~pd~~~~~~~~~~~~l~~~q~~iL~~a~~~LkpGG~LvysT 246 (479)
T 2frx_A 192 LLDAPCSGEGVVRKDPDALKNWSPESNQEIAATQRELIDSAFHALRPGGTLVYST 246 (479)
T ss_dssp EEECCCCCGGGGGTCTTSSSSCCHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEEE
T ss_pred EECCCcCCcccccCCHHHHhhcCHhHHHHHHHHHHHHHHHHHHhcCCCCEEEEec
Confidence 984321 11110 0 112367889999999999998873
|
| >2dul_A N(2),N(2)-dimethylguanosine tRNA methyltransferas; tRNA modification enzyme, guanine 26, N(2),N(2)-dimethyltran structural genomics; 1.90A {Pyrococcus horikoshii} SCOP: c.66.1.58 PDB: 2ejt_A* 2eju_A* 2ytz_A* | Back alignment and structure |
|---|
Probab=99.21 E-value=1.5e-11 Score=104.94 Aligned_cols=102 Identities=14% Similarity=0.062 Sum_probs=74.0
Q ss_pred cCCeEEEeCCCCcHHHHHHHHhC-CCeEEEEeCChHHHHHHHHHhHHhc---------------CCCCCcceEeeecCCC
Q 026036 77 ERRRCIELGSGTGALAIFLRKAM-NLDITTSDYNDQEIEDNIAYNSTTN---------------GITPALPHIKHSWGDA 140 (244)
Q Consensus 77 ~~~~VLdlG~G~G~~~~~~a~~~-~~~v~~~D~~~~~l~~~~~~~~~~~---------------~~~~~~~~~~~~~~~~ 140 (244)
++.+|||+|||+|..++.++... +.+|+++|+++.++ +.+++|+..| ++.+ +..+..+..+.
T Consensus 47 ~~~~VLDl~aGtG~~~l~~a~~~~~~~V~avDi~~~av-~~a~~N~~~n~~~~~~~~~~~~~~~gl~~-i~v~~~Da~~~ 124 (378)
T 2dul_A 47 NPKIVLDALSATGIRGIRFALETPAEEVWLNDISEDAY-ELMKRNVMLNFDGELRESKGRAILKGEKT-IVINHDDANRL 124 (378)
T ss_dssp CCSEEEESSCTTSHHHHHHHHHSSCSEEEEEESCHHHH-HHHHHHHHHHCCSCCEECSSEEEEESSSE-EEEEESCHHHH
T ss_pred CCCEEEECCCchhHHHHHHHHhCCCCeEEEEECCHHHH-HHHHHHHHHhcccccccccccccccCCCc-eEEEcCcHHHH
Confidence 67899999999999999999874 57899999999987 8999999988 5521 23332222111
Q ss_pred CCCCCCCccEEEEcccccCCcChHHHHHHHHHHHHhcCCCCceEeec
Q 026036 141 FPIPNPDWDLILASDILLYVKQYSNLIKSLSVLLKSYKPKDSQVGHL 187 (244)
Q Consensus 141 ~~~~~~~fD~I~~~~~l~~~~~~~~l~~~l~~~~~~lk~gG~~~~~~ 187 (244)
+....++||+|+. |+. .. . ...+..+.+.+|+||.++++.
T Consensus 125 ~~~~~~~fD~I~l-DP~-~~--~---~~~l~~a~~~lk~gG~l~vt~ 164 (378)
T 2dul_A 125 MAERHRYFHFIDL-DPF-GS--P---MEFLDTALRSAKRRGILGVTA 164 (378)
T ss_dssp HHHSTTCEEEEEE-CCS-SC--C---HHHHHHHHHHEEEEEEEEEEE
T ss_pred HHhccCCCCEEEe-CCC-CC--H---HHHHHHHHHhcCCCCEEEEEe
Confidence 1111347999995 554 21 1 267778889999999877763
|
| >2oxt_A Nucleoside-2'-O-methyltransferase; flavivirus, viral enzyme, RNA capping, S-adenosyl-L-methionine, viral protein; HET: SAM; 2.90A {Meaban virus} | Back alignment and structure |
|---|
Probab=99.21 E-value=8.8e-12 Score=101.38 Aligned_cols=124 Identities=15% Similarity=0.038 Sum_probs=76.1
Q ss_pred eeechHHHHHHHHhhccCcccCCeEEEeCCCCcHHHHHHHHhCCCeEEEEeCChHHHHHHHHHhHHh-cCCCCCcceEee
Q 026036 57 FLWPGTFSFAEWLMHHREWIERRRCIELGSGTGALAIFLRKAMNLDITTSDYNDQEIEDNIAYNSTT-NGITPALPHIKH 135 (244)
Q Consensus 57 ~~w~~~~~l~~~~~~~~~~~~~~~VLdlG~G~G~~~~~~a~~~~~~v~~~D~~~~~l~~~~~~~~~~-~~~~~~~~~~~~ 135 (244)
++-.++..+.+.+.. ....++.+|||||||+|.++..+++. .+|+|+|+++ ++ ..++.+... ......+..+ .
T Consensus 55 ~~sR~a~KL~~i~~~-~~~~~g~~VLDlGcGtG~~s~~la~~--~~V~gvD~s~-m~-~~a~~~~~~~~~~~~~v~~~-~ 128 (265)
T 2oxt_A 55 SVSRGTAKLAWMEER-GYVELTGRVVDLGCGRGGWSYYAASR--PHVMDVRAYT-LG-VGGHEVPRITESYGWNIVKF-K 128 (265)
T ss_dssp CSSTHHHHHHHHHHH-TSCCCCEEEEEESCTTSHHHHHHHTS--TTEEEEEEEC-CC-CSSCCCCCCCCBTTGGGEEE-E
T ss_pred ccchHHHHHHHHHHc-CCCCCCCEEEEeCcCCCHHHHHHHHc--CcEEEEECch-hh-hhhhhhhhhhhccCCCeEEE-e
Confidence 344467777666655 44557889999999999999999876 7899999998 43 211111000 0000012222 1
Q ss_pred ecCCCCCCCCCCccEEEEcccccCCcCh--HH--HHHHHHHHHHhcCCCC--ceEeec
Q 026036 136 SWGDAFPIPNPDWDLILASDILLYVKQY--SN--LIKSLSVLLKSYKPKD--SQVGHL 187 (244)
Q Consensus 136 ~~~~~~~~~~~~fD~I~~~~~l~~~~~~--~~--l~~~l~~~~~~lk~gG--~~~~~~ 187 (244)
..+|....++++||+|+|..+ +..... +. ...+++.+.++||||| .|++.+
T Consensus 129 ~~~D~~~l~~~~fD~V~sd~~-~~~~~~~~d~~~~l~~L~~~~r~LkpGG~~~fv~kv 185 (265)
T 2oxt_A 129 SRVDIHTLPVERTDVIMCDVG-ESSPKWSVESERTIKILELLEKWKVKNPSADFVVKV 185 (265)
T ss_dssp CSCCTTTSCCCCCSEEEECCC-CCCSCHHHHHHHHHHHHHHHHHHHHHCTTCEEEEEE
T ss_pred cccCHhHCCCCCCcEEEEeCc-ccCCccchhHHHHHHHHHHHHHHhccCCCeEEEEEe
Confidence 134444445678999999655 222111 11 1237888999999999 887764
|
| >1uir_A Polyamine aminopropyltransferase; spermidien synthase, spermine synthase, riken STR genomics/proteomics initiative, RSGI; 2.00A {Thermus thermophilus} SCOP: c.66.1.17 PDB: 3anx_A* | Back alignment and structure |
|---|
Probab=99.21 E-value=1e-11 Score=103.58 Aligned_cols=108 Identities=12% Similarity=0.103 Sum_probs=73.3
Q ss_pred cCCeEEEeCCCCcHHHHHHHHhC-CCeEEEEeCChHHHHHHHHHhHHh-c-C-C-CCCcceEeeecCCCCCCCCCCccEE
Q 026036 77 ERRRCIELGSGTGALAIFLRKAM-NLDITTSDYNDQEIEDNIAYNSTT-N-G-I-TPALPHIKHSWGDAFPIPNPDWDLI 151 (244)
Q Consensus 77 ~~~~VLdlG~G~G~~~~~~a~~~-~~~v~~~D~~~~~l~~~~~~~~~~-~-~-~-~~~~~~~~~~~~~~~~~~~~~fD~I 151 (244)
++.+|||||||+|..+..+++.. ..+|+++|+++.++ +.++++... + + . ..++..+..+..+.++...++||+|
T Consensus 77 ~~~~VLdiG~G~G~~~~~l~~~~~~~~v~~vDid~~~i-~~ar~~~~~~~~~~~~~~~v~~~~~D~~~~l~~~~~~fD~I 155 (314)
T 1uir_A 77 EPKRVLIVGGGEGATLREVLKHPTVEKAVMVDIDGELV-EVAKRHMPEWHQGAFDDPRAVLVIDDARAYLERTEERYDVV 155 (314)
T ss_dssp CCCEEEEEECTTSHHHHHHTTSTTCCEEEEEESCHHHH-HHHHHHCHHHHTTGGGCTTEEEEESCHHHHHHHCCCCEEEE
T ss_pred CCCeEEEEcCCcCHHHHHHHhcCCCCEEEEEECCHHHH-HHHHHHhHhhccccccCCceEEEEchHHHHHHhcCCCccEE
Confidence 45799999999999999998764 57899999999987 777776543 1 1 1 1233333322211122235689999
Q ss_pred EEcccccCC---cChHH--HHHHHHHHHHhcCCCCceEee
Q 026036 152 LASDILLYV---KQYSN--LIKSLSVLLKSYKPKDSQVGH 186 (244)
Q Consensus 152 ~~~~~l~~~---~~~~~--l~~~l~~~~~~lk~gG~~~~~ 186 (244)
++.... .. ..... ..+.++.+.+.|+|||.+++.
T Consensus 156 i~d~~~-~~~~~~~~~~l~~~~~l~~~~~~LkpgG~lv~~ 194 (314)
T 1uir_A 156 IIDLTD-PVGEDNPARLLYTVEFYRLVKAHLNPGGVMGMQ 194 (314)
T ss_dssp EEECCC-CBSTTCGGGGGSSHHHHHHHHHTEEEEEEEEEE
T ss_pred EECCCC-cccccCcchhccHHHHHHHHHHhcCCCcEEEEE
Confidence 996443 22 11111 248899999999999988876
|
| >3gjy_A Spermidine synthase; APC62791, structural genomics, PSI-2, protein structure initiative; HET: MSE; 1.47A {Corynebacterium glutamicum atcc 13032} | Back alignment and structure |
|---|
Probab=99.20 E-value=3.3e-11 Score=99.90 Aligned_cols=120 Identities=14% Similarity=0.096 Sum_probs=79.0
Q ss_pred chHHHHHHHHhh----ccCcccCCeEEEeCCCCcHHHHHHHHhC-CCeEEEEeCChHHHHHHHHHhHHhcCCCCCcceEe
Q 026036 60 PGTFSFAEWLMH----HREWIERRRCIELGSGTGALAIFLRKAM-NLDITTSDYNDQEIEDNIAYNSTTNGITPALPHIK 134 (244)
Q Consensus 60 ~~~~~l~~~~~~----~~~~~~~~~VLdlG~G~G~~~~~~a~~~-~~~v~~~D~~~~~l~~~~~~~~~~~~~~~~~~~~~ 134 (244)
...+.|+..+.. ++. .+..+|||||||+|.++..+++.. +.+|+++|+++.++ +.++++...+. ..++ .
T Consensus 69 ~Y~e~m~~~~~~l~~~~p~-p~~~rVLdIG~G~G~la~~la~~~p~~~v~~VEidp~vi-~~Ar~~~~~~~-~~rv---~ 142 (317)
T 3gjy_A 69 EYMRWIATGARAFIDAHQD-ASKLRITHLGGGACTMARYFADVYPQSRNTVVELDAELA-RLSREWFDIPR-APRV---K 142 (317)
T ss_dssp HHHHHHHHHHHHHHHHHSC-GGGCEEEEESCGGGHHHHHHHHHSTTCEEEEEESCHHHH-HHHHHHSCCCC-TTTE---E
T ss_pred HHHHHHHHHHHhhcccCCC-CCCCEEEEEECCcCHHHHHHHHHCCCcEEEEEECCHHHH-HHHHHhccccC-CCce---E
Confidence 345556655543 332 123499999999999999998854 67999999999987 88887765432 1223 3
Q ss_pred eecCCCC----CCCCCCccEEEEcccccCCcChHHH--HHHHHHHHHhcCCCCceEee
Q 026036 135 HSWGDAF----PIPNPDWDLILASDILLYVKQYSNL--IKSLSVLLKSYKPKDSQVGH 186 (244)
Q Consensus 135 ~~~~~~~----~~~~~~fD~I~~~~~l~~~~~~~~l--~~~l~~~~~~lk~gG~~~~~ 186 (244)
+..+|.. ....++||+|++.... .......+ ...++.+++.|+|||.+++.
T Consensus 143 v~~~Da~~~l~~~~~~~fDvIi~D~~~-~~~~~~~L~t~efl~~~~r~LkpgGvlv~~ 199 (317)
T 3gjy_A 143 IRVDDARMVAESFTPASRDVIIRDVFA-GAITPQNFTTVEFFEHCHRGLAPGGLYVAN 199 (317)
T ss_dssp EEESCHHHHHHTCCTTCEEEEEECCST-TSCCCGGGSBHHHHHHHHHHEEEEEEEEEE
T ss_pred EEECcHHHHHhhccCCCCCEEEECCCC-ccccchhhhHHHHHHHHHHhcCCCcEEEEE
Confidence 3333322 1235689999984322 21111112 48899999999999988776
|
| >3bt7_A TRNA (uracil-5-)-methyltransferase; methyluridine, methyltransferase, TRMA, RUMT; HET: 5MU; 2.43A {Escherichia coli} | Back alignment and structure |
|---|
Probab=99.20 E-value=8.4e-11 Score=100.15 Aligned_cols=113 Identities=13% Similarity=0.119 Sum_probs=75.0
Q ss_pred hHHHHHHHHhhccCcccCCeEEEeCCCCcHHHHHHHHhCCCeEEEEeCChHHHHHHHHHhHHhcCCCCCcceEeeecCCC
Q 026036 61 GTFSFAEWLMHHREWIERRRCIELGSGTGALAIFLRKAMNLDITTSDYNDQEIEDNIAYNSTTNGITPALPHIKHSWGDA 140 (244)
Q Consensus 61 ~~~~l~~~~~~~~~~~~~~~VLdlG~G~G~~~~~~a~~~~~~v~~~D~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 140 (244)
.+..+..++.+.... .+.+|||+|||+|.+++.+++. ..+|+++|+++.++ +.+++|+..|++. ++..+..+..+.
T Consensus 198 ~~~~l~~~~~~~~~~-~~~~vLDl~cG~G~~~l~la~~-~~~V~gvd~~~~ai-~~a~~n~~~ng~~-~v~~~~~d~~~~ 273 (369)
T 3bt7_A 198 MNIQMLEWALDVTKG-SKGDLLELYCGNGNFSLALARN-FDRVLATEIAKPSV-AAAQYNIAANHID-NVQIIRMAAEEF 273 (369)
T ss_dssp HHHHHHHHHHHHTTT-CCSEEEEESCTTSHHHHHHGGG-SSEEEEECCCHHHH-HHHHHHHHHTTCC-SEEEECCCSHHH
T ss_pred HHHHHHHHHHHHhhc-CCCEEEEccCCCCHHHHHHHhc-CCEEEEEECCHHHH-HHHHHHHHHcCCC-ceEEEECCHHHH
Confidence 346677777665443 3578999999999999999874 67999999999998 8899999998873 333333222111
Q ss_pred CC-CC--------------CCCccEEEEcccccCCcChHHHHHHHHHHHHhcCCCCceEee
Q 026036 141 FP-IP--------------NPDWDLILASDILLYVKQYSNLIKSLSVLLKSYKPKDSQVGH 186 (244)
Q Consensus 141 ~~-~~--------------~~~fD~I~~~~~l~~~~~~~~l~~~l~~~~~~lk~gG~~~~~ 186 (244)
++ .. ..+||+|++..+- .. ...++.+.++++|+++++
T Consensus 274 ~~~~~~~~~~~~l~~~~~~~~~fD~Vv~dPPr-~g--------~~~~~~~~l~~~g~ivyv 325 (369)
T 3bt7_A 274 TQAMNGVREFNRLQGIDLKSYQCETIFVDPPR-SG--------LDSETEKMVQAYPRILYI 325 (369)
T ss_dssp HHHHSSCCCCTTGGGSCGGGCCEEEEEECCCT-TC--------CCHHHHHHHTTSSEEEEE
T ss_pred HHHHhhccccccccccccccCCCCEEEECcCc-cc--------cHHHHHHHHhCCCEEEEE
Confidence 10 01 1379999986553 21 112345556688876544
|
| >1sqg_A SUN protein, FMU protein; rossmann-fold, mixed beta sheet, methyltransferase-fold, RNA-binding domain; 1.65A {Escherichia coli} SCOP: a.79.1.3 c.66.1.38 PDB: 1sqf_A | Back alignment and structure |
|---|
Probab=99.20 E-value=6.6e-11 Score=102.78 Aligned_cols=110 Identities=11% Similarity=0.070 Sum_probs=76.6
Q ss_pred CcccCCeEEEeCCCCcHHHHHHHHhCC-CeEEEEeCChHHHHHHHHHhHHhcCCCCCcceEeeecCCCCC-CCCCCccEE
Q 026036 74 EWIERRRCIELGSGTGALAIFLRKAMN-LDITTSDYNDQEIEDNIAYNSTTNGITPALPHIKHSWGDAFP-IPNPDWDLI 151 (244)
Q Consensus 74 ~~~~~~~VLdlG~G~G~~~~~~a~~~~-~~v~~~D~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~fD~I 151 (244)
...++.+|||+|||+|..+..++.... .+|+++|+++.++ +.+++|+..+++. +..+..+..+..+ +..++||+|
T Consensus 243 ~~~~g~~VLDlgaG~G~~t~~la~~~~~~~v~a~D~~~~~l-~~~~~~~~~~g~~--~~~~~~D~~~~~~~~~~~~fD~V 319 (429)
T 1sqg_A 243 APQNGEHILDLCAAPGGKTTHILEVAPEAQVVAVDIDEQRL-SRVYDNLKRLGMK--ATVKQGDGRYPSQWCGEQQFDRI 319 (429)
T ss_dssp CCCTTCEEEEESCTTCHHHHHHHHHCTTCEEEEEESSTTTH-HHHHHHHHHTTCC--CEEEECCTTCTHHHHTTCCEEEE
T ss_pred CCCCcCeEEEECCCchHHHHHHHHHcCCCEEEEECCCHHHH-HHHHHHHHHcCCC--eEEEeCchhhchhhcccCCCCEE
Confidence 345788999999999999999998763 7999999999987 8888888877762 3333333222111 234689999
Q ss_pred EEcccc------cCCcCh------HH-------HHHHHHHHHHhcCCCCceEee
Q 026036 152 LASDIL------LYVKQY------SN-------LIKSLSVLLKSYKPKDSQVGH 186 (244)
Q Consensus 152 ~~~~~l------~~~~~~------~~-------l~~~l~~~~~~lk~gG~~~~~ 186 (244)
++..+. ...... .+ ..+.++++.+.|||||+++++
T Consensus 320 l~D~Pcsg~g~~~~~p~~~~~~~~~~~~~l~~~q~~~L~~a~~~LkpGG~lvys 373 (429)
T 1sqg_A 320 LLDAPCSATGVIRRHPDIKWLRRDRDIPELAQLQSEILDAIWPHLKTGGTLVYA 373 (429)
T ss_dssp EEECCCCCGGGTTTCTTHHHHCCTTHHHHHHHHHHHHHHHHGGGEEEEEEEEEE
T ss_pred EEeCCCCcccccCCCcchhhcCCHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEE
Confidence 974332 111110 11 147789999999999998876
|
| >2wa2_A Non-structural protein 5; transferase, S-adenosyl-L- methionine, virion, membrane, flavivirus, N7-methyltransferase, 2'-O-methyltransferase; HET: SAM; 1.80A {Modoc virus} PDB: 2wa1_A* | Back alignment and structure |
|---|
Probab=99.20 E-value=7.2e-12 Score=102.44 Aligned_cols=124 Identities=12% Similarity=-0.011 Sum_probs=75.0
Q ss_pred eeechHHHHHHHHhhccCcccCCeEEEeCCCCcHHHHHHHHhCCCeEEEEeCChHHHHHHHHHhHHh-cCCCCCcceEee
Q 026036 57 FLWPGTFSFAEWLMHHREWIERRRCIELGSGTGALAIFLRKAMNLDITTSDYNDQEIEDNIAYNSTT-NGITPALPHIKH 135 (244)
Q Consensus 57 ~~w~~~~~l~~~~~~~~~~~~~~~VLdlG~G~G~~~~~~a~~~~~~v~~~D~~~~~l~~~~~~~~~~-~~~~~~~~~~~~ 135 (244)
++..++..|.+.+.. ....++.+|||||||+|.++..+++. .+|+|+|+++ |+ ..++++... ......+..+ .
T Consensus 63 ~~sR~a~KL~~i~~~-~~~~~g~~VLDlGcGtG~~s~~la~~--~~V~gVD~s~-m~-~~a~~~~~~~~~~~~~v~~~-~ 136 (276)
T 2wa2_A 63 AVSRGTAKLAWIDER-GGVELKGTVVDLGCGRGSWSYYAASQ--PNVREVKAYT-LG-TSGHEKPRLVETFGWNLITF-K 136 (276)
T ss_dssp --CHHHHHHHHHHHT-TSCCCCEEEEEESCTTCHHHHHHHTS--TTEEEEEEEC-CC-CTTSCCCCCCCCTTGGGEEE-E
T ss_pred cCchHHHHHHHHHHc-CCCCCCCEEEEeccCCCHHHHHHHHc--CCEEEEECch-hh-hhhhhchhhhhhcCCCeEEE-e
Confidence 344466666665544 44457889999999999999999876 6899999998 53 222111000 0000012222 0
Q ss_pred ecCCCCCCCCCCccEEEEcccccCCcCh----HHHHHHHHHHHHhcCCCC--ceEeec
Q 026036 136 SWGDAFPIPNPDWDLILASDILLYVKQY----SNLIKSLSVLLKSYKPKD--SQVGHL 187 (244)
Q Consensus 136 ~~~~~~~~~~~~fD~I~~~~~l~~~~~~----~~l~~~l~~~~~~lk~gG--~~~~~~ 187 (244)
..+|....++++||+|+|..+ +..... ....++++.+.++||||| .|++.+
T Consensus 137 ~~~D~~~l~~~~fD~Vvsd~~-~~~~~~~~d~~~~l~~L~~~~r~LkpGG~~~~v~~~ 193 (276)
T 2wa2_A 137 SKVDVTKMEPFQADTVLCDIG-ESNPTAAVEASRTLTVLNVISRWLEYNQGCGFCVKV 193 (276)
T ss_dssp CSCCGGGCCCCCCSEEEECCC-CCCSCHHHHHHHHHHHHHHHHHHHHHSTTCEEEEEE
T ss_pred ccCcHhhCCCCCcCEEEECCC-cCCCchhhhHHHHHHHHHHHHHHhccCCCcEEEEEe
Confidence 133433344678999999755 232111 111237888999999999 888764
|
| >1xj5_A Spermidine synthase 1; structural genomics, protein structure initiative, CESG, AT1G23820, putrescine aminopropyl transferase, SPDS1; 2.70A {Arabidopsis thaliana} SCOP: c.66.1.17 PDB: 2q41_A | Back alignment and structure |
|---|
Probab=99.20 E-value=1.3e-11 Score=103.54 Aligned_cols=108 Identities=8% Similarity=0.090 Sum_probs=73.1
Q ss_pred cCCeEEEeCCCCcHHHHHHHHhC-CCeEEEEeCChHHHHHHHHHhHHhc--CC-CCCcceEeeecCCCCC-CCCCCccEE
Q 026036 77 ERRRCIELGSGTGALAIFLRKAM-NLDITTSDYNDQEIEDNIAYNSTTN--GI-TPALPHIKHSWGDAFP-IPNPDWDLI 151 (244)
Q Consensus 77 ~~~~VLdlG~G~G~~~~~~a~~~-~~~v~~~D~~~~~l~~~~~~~~~~~--~~-~~~~~~~~~~~~~~~~-~~~~~fD~I 151 (244)
++.+|||||||+|.++..+++.. ..+|+++|+++.++ +.++++.... ++ ..++..+..+..+.++ ...++||+|
T Consensus 120 ~~~~VLdIG~G~G~~a~~la~~~~~~~V~~VDis~~~l-~~Ar~~~~~~~~gl~~~rv~~~~~D~~~~l~~~~~~~fDlI 198 (334)
T 1xj5_A 120 NPKKVLVIGGGDGGVLREVARHASIEQIDMCEIDKMVV-DVSKQFFPDVAIGYEDPRVNLVIGDGVAFLKNAAEGSYDAV 198 (334)
T ss_dssp CCCEEEEETCSSSHHHHHHTTCTTCCEEEEEESCHHHH-HHHHHHCHHHHGGGGSTTEEEEESCHHHHHHTSCTTCEEEE
T ss_pred CCCEEEEECCCccHHHHHHHHcCCCCEEEEEECCHHHH-HHHHHHHHhhccccCCCcEEEEECCHHHHHHhccCCCccEE
Confidence 56799999999999999998764 57899999999987 7887776431 22 1233333333222111 234689999
Q ss_pred EEcccccCCcChHH--HHHHHHHHHHhcCCCCceEee
Q 026036 152 LASDILLYVKQYSN--LIKSLSVLLKSYKPKDSQVGH 186 (244)
Q Consensus 152 ~~~~~l~~~~~~~~--l~~~l~~~~~~lk~gG~~~~~ 186 (244)
++...-.... ... ....++.+.+.|+|||.+++.
T Consensus 199 i~d~~~p~~~-~~~l~~~~~l~~~~~~LkpgG~lv~~ 234 (334)
T 1xj5_A 199 IVDSSDPIGP-AKELFEKPFFQSVARALRPGGVVCTQ 234 (334)
T ss_dssp EECCCCTTSG-GGGGGSHHHHHHHHHHEEEEEEEEEE
T ss_pred EECCCCccCc-chhhhHHHHHHHHHHhcCCCcEEEEe
Confidence 9854321111 111 248899999999999998885
|
| >2i7c_A Spermidine synthase; transferase, structural genomics consor; HET: AAT 1PG; 1.71A {Plasmodium falciparum} PDB: 2hte_A* 3b7p_A* 3rie_A* 2pwp_A* | Back alignment and structure |
|---|
Probab=99.19 E-value=1.2e-11 Score=101.70 Aligned_cols=108 Identities=13% Similarity=0.130 Sum_probs=72.7
Q ss_pred cCCeEEEeCCCCcHHHHHHHHhC-CCeEEEEeCChHHHHHHHHHhHHhcC--C-CCCcceEeeecCCCCCCCCCCccEEE
Q 026036 77 ERRRCIELGSGTGALAIFLRKAM-NLDITTSDYNDQEIEDNIAYNSTTNG--I-TPALPHIKHSWGDAFPIPNPDWDLIL 152 (244)
Q Consensus 77 ~~~~VLdlG~G~G~~~~~~a~~~-~~~v~~~D~~~~~l~~~~~~~~~~~~--~-~~~~~~~~~~~~~~~~~~~~~fD~I~ 152 (244)
++.+|||||||+|..+..+++.. ..+|+++|+++.++ +.++++....+ . ..++..+..+..+.++...++||+|+
T Consensus 78 ~~~~VLdiG~G~G~~~~~l~~~~~~~~v~~vDid~~~i-~~a~~~~~~~~~~~~~~~v~~~~~D~~~~l~~~~~~fD~Ii 156 (283)
T 2i7c_A 78 EPKNVLVVGGGDGGIIRELCKYKSVENIDICEIDETVI-EVSKIYFKNISCGYEDKRVNVFIEDASKFLENVTNTYDVII 156 (283)
T ss_dssp SCCEEEEEECTTSHHHHHHTTCTTCCEEEEEESCHHHH-HHHHHHCTTTSGGGGSTTEEEEESCHHHHHHHCCSCEEEEE
T ss_pred CCCeEEEEeCCcCHHHHHHHHcCCCCEEEEEECCHHHH-HHHHHHhHHhccccCCCcEEEEECChHHHHHhCCCCceEEE
Confidence 56799999999999999998764 57899999999987 78877654321 1 12233332222111112256899999
Q ss_pred EcccccCCcChHHH--HHHHHHHHHhcCCCCceEee
Q 026036 153 ASDILLYVKQYSNL--IKSLSVLLKSYKPKDSQVGH 186 (244)
Q Consensus 153 ~~~~l~~~~~~~~l--~~~l~~~~~~lk~gG~~~~~ 186 (244)
+.... .......+ ...++.+.+.|+|||.+++.
T Consensus 157 ~d~~~-~~~~~~~l~~~~~l~~~~~~L~pgG~lv~~ 191 (283)
T 2i7c_A 157 VDSSD-PIGPAETLFNQNFYEKIYNALKPNGYCVAQ 191 (283)
T ss_dssp EECCC-TTTGGGGGSSHHHHHHHHHHEEEEEEEEEE
T ss_pred EcCCC-CCCcchhhhHHHHHHHHHHhcCCCcEEEEE
Confidence 84332 21122223 48899999999999988876
|
| >2okc_A Type I restriction enzyme stysji M protein; NP_813429.1, N-6 DNA methylase, type I restriction enzyme ST protein; HET: SAM; 2.20A {Bacteroides thetaiotaomicron vpi-5482} SCOP: c.66.1.45 | Back alignment and structure |
|---|
Probab=99.18 E-value=8.2e-11 Score=102.64 Aligned_cols=121 Identities=15% Similarity=0.068 Sum_probs=83.5
Q ss_pred HHHHHhhccCcccCCeEEEeCCCCcHHHHHHHHhC--------------CCeEEEEeCChHHHHHHHHHhHHhcCCCCCc
Q 026036 65 FAEWLMHHREWIERRRCIELGSGTGALAIFLRKAM--------------NLDITTSDYNDQEIEDNIAYNSTTNGITPAL 130 (244)
Q Consensus 65 l~~~~~~~~~~~~~~~VLdlG~G~G~~~~~~a~~~--------------~~~v~~~D~~~~~l~~~~~~~~~~~~~~~~~ 130 (244)
+++++.+.....++.+|||.|||+|.+.+.+++.. ..+++|+|+++.++ +.++.|+...++...
T Consensus 159 v~~~mv~~l~~~~~~~VlDpacGsG~fl~~~~~~l~~~~~~~~~~~~~~~~~i~G~Ei~~~~~-~lA~~nl~l~g~~~~- 236 (445)
T 2okc_A 159 LIQAMVDCINPQMGETVCDPACGTGGFLLTAYDYMKGQSASKEKRDFLRDKALHGVDNTPLVV-TLASMNLYLHGIGTD- 236 (445)
T ss_dssp HHHHHHHHHCCCTTCCEEETTCTTCHHHHHHHHHHHTCC-CCHHHHHHHHTTEEEEESCHHHH-HHHHHHHHHTTCCSS-
T ss_pred HHHHHHHHhCCCCCCEEeccCCCcchHHHHHHHHHHHhcCCHHHHHhhcCeEEEEEeCCHHHH-HHHHHHHHHhCCCcC-
Confidence 45555544455577899999999999998887642 46799999999987 888888887776320
Q ss_pred ceEeeecCCCCCCC-CCCccEEEEcccccCCcChH--------------HHHHHHHHHHHhcCCCCceEeecc
Q 026036 131 PHIKHSWGDAFPIP-NPDWDLILASDILLYVKQYS--------------NLIKSLSVLLKSYKPKDSQVGHLT 188 (244)
Q Consensus 131 ~~~~~~~~~~~~~~-~~~fD~I~~~~~l~~~~~~~--------------~l~~~l~~~~~~lk~gG~~~~~~~ 188 (244)
...+..++.+... ..+||+|+++.++....... .-...++.+.+.|||||+++++++
T Consensus 237 -~~~i~~gD~l~~~~~~~fD~Iv~NPPf~~~~~~~~~~~~~~~~~~~~~~~~~fl~~~~~~Lk~gG~~a~V~p 308 (445)
T 2okc_A 237 -RSPIVCEDSLEKEPSTLVDVILANPPFGTRPAGSVDINRPDFYVETKNNQLNFLQHMMLMLKTGGRAAVVLP 308 (445)
T ss_dssp -CCSEEECCTTTSCCSSCEEEEEECCCSSCCCTTCCCCCCTTSSSCCSCHHHHHHHHHHHHEEEEEEEEEEEE
T ss_pred -CCCEeeCCCCCCcccCCcCEEEECCCCCCcccccchhhHhhcCCCCcchHHHHHHHHHHHhccCCEEEEEEC
Confidence 1223334443322 23899999998873221110 123678999999999999988743
|
| >3axs_A Probable N(2),N(2)-dimethylguanosine tRNA methylt TRM1; structural genomics, riken structural genomics/proteomics in RSGI; HET: SFG; 2.16A {Aquifex aeolicus} PDB: 3axt_A* | Back alignment and structure |
|---|
Probab=99.15 E-value=3.6e-11 Score=102.69 Aligned_cols=103 Identities=12% Similarity=-0.066 Sum_probs=76.2
Q ss_pred cCCeEEEeCCCCcHHHHHHHHhC-C-CeEEEEeCChHHHHHHHHHhHHhcCCCCC-cceEeeecCCCCC-CCCCCccEEE
Q 026036 77 ERRRCIELGSGTGALAIFLRKAM-N-LDITTSDYNDQEIEDNIAYNSTTNGITPA-LPHIKHSWGDAFP-IPNPDWDLIL 152 (244)
Q Consensus 77 ~~~~VLdlG~G~G~~~~~~a~~~-~-~~v~~~D~~~~~l~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~-~~~~~fD~I~ 152 (244)
+|.+|||++||+|.+++.++... + .+|+++|+++.++ +.+++|+..|++.++ +..+..+..+.+. ...++||+|+
T Consensus 52 ~g~~VLDlfaGtG~~sl~aa~~~~ga~~V~avDi~~~av-~~~~~N~~~Ngl~~~~v~v~~~Da~~~l~~~~~~~fD~V~ 130 (392)
T 3axs_A 52 RPVKVADPLSASGIRAIRFLLETSCVEKAYANDISSKAI-EIMKENFKLNNIPEDRYEIHGMEANFFLRKEWGFGFDYVD 130 (392)
T ss_dssp SCEEEEESSCTTSHHHHHHHHHCSCEEEEEEECSCHHHH-HHHHHHHHHTTCCGGGEEEECSCHHHHHHSCCSSCEEEEE
T ss_pred CCCEEEECCCcccHHHHHHHHhCCCCCEEEEEECCHHHH-HHHHHHHHHhCCCCceEEEEeCCHHHHHHHhhCCCCcEEE
Confidence 57899999999999999998863 3 6899999999987 999999999998543 4444333222122 2235799999
Q ss_pred EcccccCCcChHHHHHHHHHHHHhcCCCCceEeec
Q 026036 153 ASDILLYVKQYSNLIKSLSVLLKSYKPKDSQVGHL 187 (244)
Q Consensus 153 ~~~~l~~~~~~~~l~~~l~~~~~~lk~gG~~~~~~ 187 (244)
+.. |.. .. ..+..+.+.|++||.++++.
T Consensus 131 lDP--~g~--~~---~~l~~a~~~Lk~gGll~~t~ 158 (392)
T 3axs_A 131 LDP--FGT--PV---PFIESVALSMKRGGILSLTA 158 (392)
T ss_dssp ECC--SSC--CH---HHHHHHHHHEEEEEEEEEEE
T ss_pred ECC--CcC--HH---HHHHHHHHHhCCCCEEEEEe
Confidence 754 221 22 57778889999999887763
|
| >2ih2_A Modification methylase TAQI; DNA, DNA methyltransferase, target base partner, 5-methylpyr 2(1H)-ONE, base flipping; HET: 5PY 6MA NEA; 1.61A {Thermus aquaticus} SCOP: c.66.1.27 d.287.1.1 PDB: 2ibs_A* 2ibt_A* 2ih4_A* 2ih5_A* 2jg3_A* 2np6_A* 2np7_A* 1aqj_A* 1aqi_A* 2adm_A* 1g38_A* | Back alignment and structure |
|---|
Probab=99.12 E-value=1.1e-10 Score=101.02 Aligned_cols=114 Identities=17% Similarity=0.134 Sum_probs=75.6
Q ss_pred HHHHHHHhhccCcccCCeEEEeCCCCcHHHHHHHHh--CCCeEEEEeCChHHHHHHHHHhHHhcCCCCCcceEeeecCCC
Q 026036 63 FSFAEWLMHHREWIERRRCIELGSGTGALAIFLRKA--MNLDITTSDYNDQEIEDNIAYNSTTNGITPALPHIKHSWGDA 140 (244)
Q Consensus 63 ~~l~~~~~~~~~~~~~~~VLdlG~G~G~~~~~~a~~--~~~~v~~~D~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 140 (244)
..+++++.+.....++.+|||+|||+|.+++.+++. ...+|+|+|+++.++ +.+ .++..+..+..+.
T Consensus 25 ~~l~~~~~~~~~~~~~~~vLD~gcGtG~~~~~~~~~~~~~~~i~gvDi~~~~~-~~a----------~~~~~~~~D~~~~ 93 (421)
T 2ih2_A 25 PEVVDFMVSLAEAPRGGRVLEPACAHGPFLRAFREAHGTAYRFVGVEIDPKAL-DLP----------PWAEGILADFLLW 93 (421)
T ss_dssp HHHHHHHHHHCCCCTTCEEEEETCTTCHHHHHHHHHHCSCSEEEEEESCTTTC-CCC----------TTEEEEESCGGGC
T ss_pred HHHHHHHHHhhccCCCCEEEECCCCChHHHHHHHHHhCCCCeEEEEECCHHHH-HhC----------CCCcEEeCChhhc
Confidence 345666655544445679999999999999999876 357999999999876 322 1122332222221
Q ss_pred CCCCCCCccEEEEcccccCCcC-------h-HHH------------------HHHHHHHHHhcCCCCceEeeccc
Q 026036 141 FPIPNPDWDLILASDILLYVKQ-------Y-SNL------------------IKSLSVLLKSYKPKDSQVGHLTK 189 (244)
Q Consensus 141 ~~~~~~~fD~I~~~~~l~~~~~-------~-~~l------------------~~~l~~~~~~lk~gG~~~~~~~~ 189 (244)
...++||+|+++.++..... . +.. ...++.+.+.|+|||+++++++.
T Consensus 94 --~~~~~fD~Ii~NPPy~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fl~~~~~~Lk~~G~~~~i~p~ 166 (421)
T 2ih2_A 94 --EPGEAFDLILGNPPYGIVGEASKYPIHVFKAVKDLYKKAFSTWKGKYNLYGAFLEKAVRLLKPGGVLVFVVPA 166 (421)
T ss_dssp --CCSSCEEEEEECCCCCCBSCTTTCSBCCCHHHHHHHHHHCTTCCTTCCHHHHHHHHHHHHEEEEEEEEEEEEG
T ss_pred --CccCCCCEEEECcCccCcccccccccccCHHHHHHHHHhhhcccCCccHHHHHHHHHHHHhCCCCEEEEEECh
Confidence 12358999999988643222 0 111 14588899999999998887443
|
| >3v97_A Ribosomal RNA large subunit methyltransferase L; YCBY, RNA methyltransferase, ribosome RNA, SAH, RLML; HET: SAH OSU; 2.20A {Escherichia coli} PDB: 3v8v_A* | Back alignment and structure |
|---|
Probab=99.09 E-value=8.2e-10 Score=101.26 Aligned_cols=129 Identities=15% Similarity=0.124 Sum_probs=90.5
Q ss_pred chHHHHHHHHhhccCcccCCeEEEeCCCCcHHHHHHHHhC----------------------------------------
Q 026036 60 PGTFSFAEWLMHHREWIERRRCIELGSGTGALAIFLRKAM---------------------------------------- 99 (244)
Q Consensus 60 ~~~~~l~~~~~~~~~~~~~~~VLdlG~G~G~~~~~~a~~~---------------------------------------- 99 (244)
|-.+.|+..+.......++.+|||.+||+|.+.+.++...
T Consensus 173 pl~e~LAa~ll~~~~~~~~~~llDP~CGSGt~lIeAa~~a~~~apG~~R~~f~fe~w~~~~~~~w~~~~~ea~~~~~~~~ 252 (703)
T 3v97_A 173 PIKETLAAAIVMRSGWQPGTPLLDPMCGSGTLLIEAAMLATDRAPGLHRGRWGFSGWAQHDEAIWQEVKAEAQTRARKGL 252 (703)
T ss_dssp SSCHHHHHHHHHHTTCCTTSCEEETTCTTSHHHHHHHHHHTTCCTTTTCCCCTTTTBTTCCHHHHHHHHHHHHHHHHHHH
T ss_pred CCcHHHHHHHHHhhCCCCCCeEEecCCCCcHHHHHHHHHHhhcCCCCCccccchhhcccCCHHHHHHHHHHHHHHhhhcc
Confidence 3456788777777666678899999999999998887642
Q ss_pred ---CCeEEEEeCChHHHHHHHHHhHHhcCCCCCcceEeeecCCCC-CCCCCCccEEEEcccccCCc-----ChHHHHHHH
Q 026036 100 ---NLDITTSDYNDQEIEDNIAYNSTTNGITPALPHIKHSWGDAF-PIPNPDWDLILASDILLYVK-----QYSNLIKSL 170 (244)
Q Consensus 100 ---~~~v~~~D~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~fD~I~~~~~l~~~~-----~~~~l~~~l 170 (244)
..+|+|+|+++.++ +.++.|+..+++...+.....+..+.. +...++||+|++|.++ ... ....+-+.+
T Consensus 253 ~~~~~~i~G~Did~~av-~~A~~N~~~agv~~~i~~~~~D~~~~~~~~~~~~~d~Iv~NPPY-G~Rlg~~~~l~~ly~~l 330 (703)
T 3v97_A 253 AEYSSHFYGSDSDARVI-QRARTNARLAGIGELITFEVKDVAQLTNPLPKGPYGTVLSNPPY-GERLDSEPALIALHSLL 330 (703)
T ss_dssp HHCCCCEEEEESCHHHH-HHHHHHHHHTTCGGGEEEEECCGGGCCCSCTTCCCCEEEECCCC-CC---CCHHHHHHHHHH
T ss_pred ccCCccEEEEECCHHHH-HHHHHHHHHcCCCCceEEEECChhhCccccccCCCCEEEeCCCc-cccccchhHHHHHHHHH
Confidence 15799999999998 899999999988544444433332221 1222379999999885 322 223444555
Q ss_pred HHHHHhcCCCCceEeecccc
Q 026036 171 SVLLKSYKPKDSQVGHLTKN 190 (244)
Q Consensus 171 ~~~~~~lk~gG~~~~~~~~~ 190 (244)
.+..+.+.|||++++.+...
T Consensus 331 ~~~lk~~~~g~~~~ilt~~~ 350 (703)
T 3v97_A 331 GRIMKNQFGGWNLSLFSASP 350 (703)
T ss_dssp HHHHHHHCTTCEEEEEESCH
T ss_pred HHHHHhhCCCCeEEEEeCCH
Confidence 66666677999999985443
|
| >2xyq_A Putative 2'-O-methyl transferase; transferase-viral protein complex, rossman fold; HET: SAH; 2.00A {Sars coronavirus} PDB: 2xyv_A* 2xyr_A* | Back alignment and structure |
|---|
Probab=99.06 E-value=1.1e-09 Score=89.89 Aligned_cols=128 Identities=14% Similarity=0.141 Sum_probs=80.6
Q ss_pred HHHHHHh-hccCcccCCeEEEeCCCC------cHHHHHHHHhC--CCeEEEEeCChHHHHHHHHHhHHhcCCCCCcce-E
Q 026036 64 SFAEWLM-HHREWIERRRCIELGSGT------GALAIFLRKAM--NLDITTSDYNDQEIEDNIAYNSTTNGITPALPH-I 133 (244)
Q Consensus 64 ~l~~~~~-~~~~~~~~~~VLdlG~G~------G~~~~~~a~~~--~~~v~~~D~~~~~l~~~~~~~~~~~~~~~~~~~-~ 133 (244)
.+.+++. ......++.+|||||||+ |. ..+++.. ..+|+++|+++. + . ++.. +
T Consensus 49 ~l~~~l~~~~l~l~~g~~VLDLGcGsg~~~GpGs--~~~a~~~~~~~~V~gvDis~~-v----------~----~v~~~i 111 (290)
T 2xyq_A 49 QLCQYLNTLTLAVPYNMRVIHFGAGSDKGVAPGT--AVLRQWLPTGTLLVDSDLNDF-V----------S----DADSTL 111 (290)
T ss_dssp HHHHHHTTSCCCCCTTCEEEEESCCCTTSBCHHH--HHHHHHSCTTCEEEEEESSCC-B----------C----SSSEEE
T ss_pred HHHHHHHHhhcCCCCCCEEEEeCCCCCCCCCcHH--HHHHHHcCCCCEEEEEECCCC-C----------C----CCEEEE
Confidence 4566663 344566888999999955 65 4444444 478999999986 1 1 2344 4
Q ss_pred eeecCCCCCCCCCCccEEEEccccc-------CC-cChHHHHHHHHHHHHhcCCCCceEeecccccCCCCCCCCCCCeEE
Q 026036 134 KHSWGDAFPIPNPDWDLILASDILL-------YV-KQYSNLIKSLSVLLKSYKPKDSQVGHLTKNEQGEGTEGLPWPAFL 205 (244)
Q Consensus 134 ~~~~~~~~~~~~~~fD~I~~~~~l~-------~~-~~~~~l~~~l~~~~~~lk~gG~~~~~~~~~~~~~~~~~~~~~~~~ 205 (244)
..++.+. +. .++||+|+++.... .+ .....+...++++.+.|||||+|++.+...
T Consensus 112 ~gD~~~~-~~-~~~fD~Vvsn~~~~~~g~~~~d~~~~~~l~~~~l~~a~r~LkpGG~~v~~~~~~--------------- 174 (290)
T 2xyq_A 112 IGDCATV-HT-ANKWDLIISDMYDPRTKHVTKENDSKEGFFTYLCGFIKQKLALGGSIAVKITEH--------------- 174 (290)
T ss_dssp ESCGGGC-CC-SSCEEEEEECCCCCC---CCSCCCCCCTHHHHHHHHHHHHEEEEEEEEEEECSS---------------
T ss_pred ECccccC-Cc-cCcccEEEEcCCccccccccccccchHHHHHHHHHHHHHhcCCCcEEEEEEecc---------------
Confidence 4444332 22 26799999863320 00 112234578999999999999988752111
Q ss_pred EeeeeccCccchhhHHHHHhhcCCeEEEe
Q 026036 206 MSWRRRIGKEDETIFFTSCENAGLEVKHL 234 (244)
Q Consensus 206 ~~~~~~~~~~~~~~~~~~l~~~Gf~v~~~ 234 (244)
....++.+.+++.||...++
T Consensus 175 ---------~~~~~l~~~l~~~GF~~v~~ 194 (290)
T 2xyq_A 175 ---------SWNADLYKLMGHFSWWTAFV 194 (290)
T ss_dssp ---------SCCHHHHHHHTTEEEEEEEE
T ss_pred ---------CCHHHHHHHHHHcCCcEEEE
Confidence 11257788889889875544
|
| >3giw_A Protein of unknown function DUF574; rossmann-fold protein, structural genomics, joint center for structural genomics, JCSG; HET: MSE UNL; 1.45A {Streptomyces avermitilis} PDB: 3go4_A* | Back alignment and structure |
|---|
Probab=99.06 E-value=5.8e-10 Score=90.39 Aligned_cols=108 Identities=11% Similarity=0.101 Sum_probs=68.9
Q ss_pred CeEEEeCCCC---cHHHHHHHHh-CCCeEEEEeCChHHHHHHHHHhHHhcCCCCCcceEeeecCCCC---CCC--CCCcc
Q 026036 79 RRCIELGSGT---GALAIFLRKA-MNLDITTSDYNDQEIEDNIAYNSTTNGITPALPHIKHSWGDAF---PIP--NPDWD 149 (244)
Q Consensus 79 ~~VLdlG~G~---G~~~~~~a~~-~~~~v~~~D~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~--~~~fD 149 (244)
.+|||||||+ |.....+.+. ..++|+++|.|+.|+ +.++.++.... ..++..+..+..+.. ..+ ...||
T Consensus 80 ~q~LDLGcG~pT~~~~~~la~~~~P~arVv~VD~sp~mL-a~Ar~~l~~~~-~~~~~~v~aD~~~~~~~l~~~~~~~~~D 157 (277)
T 3giw_A 80 RQFLDIGTGIPTSPNLHEIAQSVAPESRVVYVDNDPIVL-TLSQGLLASTP-EGRTAYVEADMLDPASILDAPELRDTLD 157 (277)
T ss_dssp CEEEEESCCSCCSSCHHHHHHHHCTTCEEEEEECCHHHH-HTTHHHHCCCS-SSEEEEEECCTTCHHHHHTCHHHHTTCC
T ss_pred CEEEEeCCCCCcccHHHHHHHHHCCCCEEEEEeCChHHH-HHHHHHhccCC-CCcEEEEEecccChhhhhcccccccccC
Confidence 5899999997 3443333322 378999999999998 77776654322 123344444443310 000 12344
Q ss_pred -----EEEEcccccCCcChHHHHHHHHHHHHhcCCCCceEeecc
Q 026036 150 -----LILASDILLYVKQYSNLIKSLSVLLKSYKPKDSQVGHLT 188 (244)
Q Consensus 150 -----~I~~~~~l~~~~~~~~l~~~l~~~~~~lk~gG~~~~~~~ 188 (244)
.|+++.++++.........+++++.+.|+|||.|++...
T Consensus 158 ~~~p~av~~~avLH~l~d~~~p~~~l~~l~~~L~PGG~Lvls~~ 201 (277)
T 3giw_A 158 LTRPVALTVIAIVHFVLDEDDAVGIVRRLLEPLPSGSYLAMSIG 201 (277)
T ss_dssp TTSCCEEEEESCGGGSCGGGCHHHHHHHHHTTSCTTCEEEEEEE
T ss_pred cCCcchHHhhhhHhcCCchhhHHHHHHHHHHhCCCCcEEEEEec
Confidence 588888884443333356899999999999999998843
|
| >1qam_A ERMC' methyltransferase; rRNA methyltransferase ERMC', cofactor analogs; 2.20A {Bacillus subtilis} SCOP: c.66.1.24 PDB: 1qan_A* 1qao_A* 1qaq_A* 2erc_A | Back alignment and structure |
|---|
Probab=99.04 E-value=1.5e-09 Score=87.12 Aligned_cols=115 Identities=13% Similarity=0.127 Sum_probs=73.7
Q ss_pred HHHHHHHhhccCcccCCeEEEeCCCCcHHHHHHHHhCCCeEEEEeCChHHHHHHHHHhHHhcCCCCCcceEeeecCCCCC
Q 026036 63 FSFAEWLMHHREWIERRRCIELGSGTGALAIFLRKAMNLDITTSDYNDQEIEDNIAYNSTTNGITPALPHIKHSWGDAFP 142 (244)
Q Consensus 63 ~~l~~~~~~~~~~~~~~~VLdlG~G~G~~~~~~a~~~~~~v~~~D~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 142 (244)
..+.+.+.......++.+|||+|||+|.++..++.. +.+|+++|+++.++ +.++++.... .++..+..+..+ .+
T Consensus 16 ~~~~~~i~~~~~~~~~~~VLDiG~G~G~lt~~l~~~-~~~v~~vD~~~~~~-~~a~~~~~~~---~~v~~~~~D~~~-~~ 89 (244)
T 1qam_A 16 KHNIDKIMTNIRLNEHDNIFEIGSGKGHFTLELVQR-CNFVTAIEIDHKLC-KTTENKLVDH---DNFQVLNKDILQ-FK 89 (244)
T ss_dssp HHHHHHHHTTCCCCTTCEEEEECCTTSHHHHHHHHH-SSEEEEECSCHHHH-HHHHHHTTTC---CSEEEECCCGGG-CC
T ss_pred HHHHHHHHHhCCCCCCCEEEEEeCCchHHHHHHHHc-CCeEEEEECCHHHH-HHHHHhhccC---CCeEEEEChHHh-CC
Confidence 345556666666667889999999999999999987 48999999999987 7777765431 223333322221 22
Q ss_pred CCC-CCccEEEEcccccCCcChHHHHHHH--------------HHHHHhcCCCCceEee
Q 026036 143 IPN-PDWDLILASDILLYVKQYSNLIKSL--------------SVLLKSYKPKDSQVGH 186 (244)
Q Consensus 143 ~~~-~~fD~I~~~~~l~~~~~~~~l~~~l--------------~~~~~~lk~gG~~~~~ 186 (244)
+.. ..| .|+++.++ +.. .+.+.+.+ +.+.|+++++|++.+.
T Consensus 90 ~~~~~~~-~vv~nlPy-~~~-~~~l~~~l~~~~~~~~~lm~q~e~a~rll~~~G~l~v~ 145 (244)
T 1qam_A 90 FPKNQSY-KIFGNIPY-NIS-TDIIRKIVFDSIADEIYLIVEYGFAKRLLNTKRSLALF 145 (244)
T ss_dssp CCSSCCC-EEEEECCG-GGH-HHHHHHHHHSCCCSEEEEEEEHHHHHHHTCTTSHHHHH
T ss_pred cccCCCe-EEEEeCCc-ccC-HHHHHHHHhcCCCCeEEEEEEHHHHHHHhcCCcchhHH
Confidence 222 245 46665554 322 22333333 3478899999987665
|
| >2cmg_A Spermidine synthase; transferase, putrescine aminopropyltransferase, spermidine biosynthesis, polyamine biosynthesis, SPEE; 2.0A {Helicobacter pylori} PDB: 2cmh_A | Back alignment and structure |
|---|
Probab=99.04 E-value=6.1e-11 Score=96.25 Aligned_cols=97 Identities=13% Similarity=-0.002 Sum_probs=68.4
Q ss_pred cCCeEEEeCCCCcHHHHHHHHhCCCeEEEEeCChHHHHHHHHHhHHh--cCCCCCcceEeeecCCCCCCCCCCccEEEEc
Q 026036 77 ERRRCIELGSGTGALAIFLRKAMNLDITTSDYNDQEIEDNIAYNSTT--NGITPALPHIKHSWGDAFPIPNPDWDLILAS 154 (244)
Q Consensus 77 ~~~~VLdlG~G~G~~~~~~a~~~~~~v~~~D~~~~~l~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~fD~I~~~ 154 (244)
.+.+|||||||+|.++..+++. +.+|+++|+++.++ +.++++... ++... ..+.+..++...+. ++||+|++.
T Consensus 72 ~~~~VL~iG~G~G~~~~~ll~~-~~~v~~veid~~~i-~~ar~~~~~~~~~~~~--~rv~~~~~D~~~~~-~~fD~Ii~d 146 (262)
T 2cmg_A 72 ELKEVLIVDGFDLELAHQLFKY-DTHIDFVQADEKIL-DSFISFFPHFHEVKNN--KNFTHAKQLLDLDI-KKYDLIFCL 146 (262)
T ss_dssp CCCEEEEESSCCHHHHHHHTTS-SCEEEEECSCHHHH-GGGTTTSTTHHHHHTC--TTEEEESSGGGSCC-CCEEEEEES
T ss_pred CCCEEEEEeCCcCHHHHHHHhC-CCEEEEEECCHHHH-HHHHHHHHhhccccCC--CeEEEEechHHHHH-hhCCEEEEC
Confidence 4579999999999999988877 48999999999987 666654321 11100 12344444544444 789999985
Q ss_pred ccccCCcChHHHHHHHHHHHHhcCCCCceEee
Q 026036 155 DILLYVKQYSNLIKSLSVLLKSYKPKDSQVGH 186 (244)
Q Consensus 155 ~~l~~~~~~~~l~~~l~~~~~~lk~gG~~~~~ 186 (244)
.. . +. ..++.+.+.|+|||.+++.
T Consensus 147 -~~-d----p~--~~~~~~~~~L~pgG~lv~~ 170 (262)
T 2cmg_A 147 -QE-P----DI--HRIDGLKRMLKEDGVFISV 170 (262)
T ss_dssp -SC-C----CH--HHHHHHHTTEEEEEEEEEE
T ss_pred -CC-C----hH--HHHHHHHHhcCCCcEEEEE
Confidence 21 1 11 4789999999999988875
|
| >1yub_A Ermam, rRNA methyltransferase; MLS antibiotics; NMR {Streptococcus pneumoniae} SCOP: c.66.1.24 | Back alignment and structure |
|---|
Probab=99.03 E-value=2.5e-11 Score=97.59 Aligned_cols=110 Identities=13% Similarity=0.148 Sum_probs=72.5
Q ss_pred HHHhhccCcccCCeEEEeCCCCcHHHHHHHHhCCCeEEEEeCChHHHHHHHHHhHHhcCCCCCcceEeeecCCCCC--CC
Q 026036 67 EWLMHHREWIERRRCIELGSGTGALAIFLRKAMNLDITTSDYNDQEIEDNIAYNSTTNGITPALPHIKHSWGDAFP--IP 144 (244)
Q Consensus 67 ~~~~~~~~~~~~~~VLdlG~G~G~~~~~~a~~~~~~v~~~D~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~ 144 (244)
+.+.+.....++.+|||+|||+|.++..++.. +.+|+++|+++.++ +.++++... . ..+.+..+|... +.
T Consensus 19 ~~i~~~~~~~~~~~VLDiG~G~G~~~~~l~~~-~~~v~~id~~~~~~-~~a~~~~~~--~----~~v~~~~~D~~~~~~~ 90 (245)
T 1yub_A 19 NQIIKQLNLKETDTVYEIGTGKGHLTTKLAKI-SKQVTSIELDSHLF-NLSSEKLKL--N----TRVTLIHQDILQFQFP 90 (245)
T ss_dssp HHHHHHCCCCSSEEEEECSCCCSSCSHHHHHH-SSEEEESSSSCSSS-SSSSCTTTT--C----SEEEECCSCCTTTTCC
T ss_pred HHHHHhcCCCCCCEEEEEeCCCCHHHHHHHHh-CCeEEEEECCHHHH-HHHHHHhcc--C----CceEEEECChhhcCcc
Confidence 34444445567889999999999999999888 58999999999886 555554431 1 233343444332 23
Q ss_pred -CCCccEEEEcccccCCcChHHHHHHH--------------HHHHHhcCCCCceEeec
Q 026036 145 -NPDWDLILASDILLYVKQYSNLIKSL--------------SVLLKSYKPKDSQVGHL 187 (244)
Q Consensus 145 -~~~fD~I~~~~~l~~~~~~~~l~~~l--------------~~~~~~lk~gG~~~~~~ 187 (244)
.++| .|+++.+. +.. .+.+...+ +.+.++|+|||++.+..
T Consensus 91 ~~~~f-~vv~n~Py-~~~-~~~~~~~~~~~~~~~~~lm~q~e~a~rll~~~G~l~v~~ 145 (245)
T 1yub_A 91 NKQRY-KIVGNIPY-HLS-TQIIKKVVFESRASDIYLIVEEGFYKRTLDIHRTLGLLL 145 (245)
T ss_dssp CSSEE-EEEEECCS-SSC-HHHHHHHHHHCCCEEEEEEEESSHHHHHHCGGGSHHHHT
T ss_pred cCCCc-EEEEeCCc-ccc-HHHHHHHHhCCCCCeEEEEeeHHHHHHHhCCCCchhhhh
Confidence 2468 77777664 332 22222333 55889999999988774
|
| >3sso_A Methyltransferase; macrolide, natural product, rossman fold; HET: SAH; 1.90A {Micromonospora griseorubida} PDB: 3ssn_A* 3ssm_A* | Back alignment and structure |
|---|
Probab=99.02 E-value=1.5e-10 Score=98.30 Aligned_cols=94 Identities=17% Similarity=0.203 Sum_probs=66.1
Q ss_pred cCCeEEEeCCC------CcHHHHHHHHhC--CCeEEEEeCChHHHHHHHHHhHHhcCCCCCcceEeeecCCCCCCC----
Q 026036 77 ERRRCIELGSG------TGALAIFLRKAM--NLDITTSDYNDQEIEDNIAYNSTTNGITPALPHIKHSWGDAFPIP---- 144 (244)
Q Consensus 77 ~~~~VLdlG~G------~G~~~~~~a~~~--~~~v~~~D~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---- 144 (244)
++.+||||||| +|..++.+++.. ..+|+++|+++.|. . ...++..+..+..+ +++.
T Consensus 216 ~~~rVLDIGCG~~~~~~TGG~Sl~la~~~fP~a~V~GVDiSp~m~-------~----~~~rI~fv~GDa~d-lpf~~~l~ 283 (419)
T 3sso_A 216 QQVRVLEIGVGGYKHPEWGGGSLRMWKSFFPRGQIYGLDIMDKSH-------V----DELRIRTIQGDQND-AEFLDRIA 283 (419)
T ss_dssp SCCEEEEECCSCTTCSSCCCHHHHHHHHHCTTCEEEEEESSCCGG-------G----CBTTEEEEECCTTC-HHHHHHHH
T ss_pred CCCEEEEEecCCCcCCCCCHHHHHHHHHhCCCCEEEEEECCHHHh-------h----cCCCcEEEEecccc-cchhhhhh
Confidence 56799999999 777777776653 78999999999862 0 11223333333322 2233
Q ss_pred --CCCccEEEEcccccCCcChHHHHHHHHHHHHhcCCCCceEee
Q 026036 145 --NPDWDLILASDILLYVKQYSNLIKSLSVLLKSYKPKDSQVGH 186 (244)
Q Consensus 145 --~~~fD~I~~~~~l~~~~~~~~l~~~l~~~~~~lk~gG~~~~~ 186 (244)
+++||+|++.... + ..+..+.+++++++|||||.+++.
T Consensus 284 ~~d~sFDlVisdgsH-~---~~d~~~aL~el~rvLKPGGvlVi~ 323 (419)
T 3sso_A 284 RRYGPFDIVIDDGSH-I---NAHVRTSFAALFPHVRPGGLYVIE 323 (419)
T ss_dssp HHHCCEEEEEECSCC-C---HHHHHHHHHHHGGGEEEEEEEEEE
T ss_pred cccCCccEEEECCcc-c---chhHHHHHHHHHHhcCCCeEEEEE
Confidence 4789999985432 2 356679999999999999999887
|
| >2ar0_A M.ecoki, type I restriction enzyme ecoki M protein; structural genomics, protein structure initiative, nysgxrc; 2.80A {Escherichia coli} SCOP: c.66.1.45 PDB: 2y7c_B 2y7h_B* | Back alignment and structure |
|---|
Probab=98.98 E-value=1.2e-09 Score=97.40 Aligned_cols=123 Identities=9% Similarity=0.040 Sum_probs=82.8
Q ss_pred HHHHHhhccCcccCCeEEEeCCCCcHHHHHHHHhC-------------------CCeEEEEeCChHHHHHHHHHhHHhcC
Q 026036 65 FAEWLMHHREWIERRRCIELGSGTGALAIFLRKAM-------------------NLDITTSDYNDQEIEDNIAYNSTTNG 125 (244)
Q Consensus 65 l~~~~~~~~~~~~~~~VLdlG~G~G~~~~~~a~~~-------------------~~~v~~~D~~~~~l~~~~~~~~~~~~ 125 (244)
+++++.......++.+|||.|||+|.+.+.++... ..+++|+|+++.++ ..++.|+..++
T Consensus 157 iv~~mv~~l~p~~~~~VlDPaCGSG~fLi~a~~~l~~~~~~~~~~~~~~~~~~~~~~i~GiEid~~~~-~lA~~nl~l~g 235 (541)
T 2ar0_A 157 LIKTIIHLLKPQPREVVQDPAAGTAGFLIEADRYVKSQTNDLDDLDGDTQDFQIHRAFIGLELVPGTR-RLALMNCLLHD 235 (541)
T ss_dssp HHHHHHHHHCCCTTCCEEETTCTTTHHHHHHHHHHHTTTTTTTTSCHHHHHHHHHTSEEEEESCHHHH-HHHHHHHHTTT
T ss_pred HHHHHHHHhccCCCCeEecCCcccchHHHHHHHHHHHhhcccccCCHHHHhhhhcceEEEEcCCHHHH-HHHHHHHHHhC
Confidence 34444444445577899999999999988776542 24799999999987 88888888777
Q ss_pred CCCCc-ceEeeecCCCCCC---CCCCccEEEEcccccCCcC-----------hHHHHHHHHHHHHhcCCCCceEeecc
Q 026036 126 ITPAL-PHIKHSWGDAFPI---PNPDWDLILASDILLYVKQ-----------YSNLIKSLSVLLKSYKPKDSQVGHLT 188 (244)
Q Consensus 126 ~~~~~-~~~~~~~~~~~~~---~~~~fD~I~~~~~l~~~~~-----------~~~l~~~l~~~~~~lk~gG~~~~~~~ 188 (244)
+.... ....+..++.+.. ...+||+|++++++-.... ...-...++.+.+.|||||+++++++
T Consensus 236 i~~~~~~~~~I~~gDtL~~~~~~~~~fD~Vv~NPPf~~~~~~~~~~~~~~~~~~~~~~Fl~~~l~~Lk~gGr~a~V~p 313 (541)
T 2ar0_A 236 IEGNLDHGGAIRLGNTLGSDGENLPKAHIVATNPPFGSAAGTNITRTFVHPTSNKQLCFMQHIIETLHPGGRAAVVVP 313 (541)
T ss_dssp CCCBGGGTBSEEESCTTSHHHHTSCCEEEEEECCCCTTCSSCCCCSCCSSCCSCHHHHHHHHHHHHEEEEEEEEEEEE
T ss_pred CCccccccCCeEeCCCcccccccccCCeEEEECCCcccccchhhHhhcCCCCCchHHHHHHHHHHHhCCCCEEEEEec
Confidence 63210 0023334444331 2458999999988622111 11123678899999999999988843
|
| >3khk_A Type I restriction-modification system methylation subunit; structural genomics, PSI-2, protein structure initiative; 2.55A {Methanosarcina mazei} | Back alignment and structure |
|---|
Probab=98.97 E-value=1.9e-09 Score=96.02 Aligned_cols=118 Identities=15% Similarity=0.158 Sum_probs=79.4
Q ss_pred HHHHhhccCcccCCeEEEeCCCCcHHHHHHHHhC----------------CCeEEEEeCChHHHHHHHHHhHHhcCCCCC
Q 026036 66 AEWLMHHREWIERRRCIELGSGTGALAIFLRKAM----------------NLDITTSDYNDQEIEDNIAYNSTTNGITPA 129 (244)
Q Consensus 66 ~~~~~~~~~~~~~~~VLdlG~G~G~~~~~~a~~~----------------~~~v~~~D~~~~~l~~~~~~~~~~~~~~~~ 129 (244)
++++.......++ +|||.+||||.+.+.++... ..+++|+|+++.++ ..++.|+..+++...
T Consensus 234 v~lmv~ll~p~~~-~VlDPaCGSG~fLi~a~~~l~~~~~~~~~~~~~~~~~~~i~G~Eid~~~~-~lA~~Nl~l~gi~~~ 311 (544)
T 3khk_A 234 VTLIVEMLEPYKG-RVYDPAMGSGGFFVSSDKFIEKHANVKHYNASEQKKQISVYGQESNPTTW-KLAAMNMVIRGIDFN 311 (544)
T ss_dssp HHHHHHHHCCCSE-EEEESSCTTCHHHHHHHHHHHHHHHHHTSCHHHHGGGEEEEECCCCHHHH-HHHHHHHHHTTCCCB
T ss_pred HHHHHHHHhcCCC-eEeCcccCcCcHHHHHHHHHHHhccccccchHHHhhhceEEEEeCCHHHH-HHHHHHHHHhCCCcc
Confidence 3333333333344 99999999999887765422 35799999999987 888889988887433
Q ss_pred cceEeeecCCCCC---CCCCCccEEEEcccccCCc--C--------------------h----HHHHHHHHHHHHhcCCC
Q 026036 130 LPHIKHSWGDAFP---IPNPDWDLILASDILLYVK--Q--------------------Y----SNLIKSLSVLLKSYKPK 180 (244)
Q Consensus 130 ~~~~~~~~~~~~~---~~~~~fD~I~~~~~l~~~~--~--------------------~----~~l~~~l~~~~~~lk~g 180 (244)
+ .+..++.+. ....+||+|++|+++-... . . ..-...++.+.+.|+||
T Consensus 312 i---~i~~gDtL~~~~~~~~~fD~Iv~NPPf~~~~~~~~~~~~d~r~~~g~~~~~~~~~~~~~~~~~~Fl~~~l~~Lk~g 388 (544)
T 3khk_A 312 F---GKKNADSFLDDQHPDLRADFVMTNPPFNMKDWWHEKLADDPRWTINTNGEKRILTPPTGNANFAWMLHMLYHLAPT 388 (544)
T ss_dssp C---CSSSCCTTTSCSCTTCCEEEEEECCCSSCCSCCCGGGTTCGGGEECCC--CEECCCCTTCTHHHHHHHHHHTEEEE
T ss_pred c---ceeccchhcCcccccccccEEEECCCcCCccccchhhhhhhhhhcCcccccccccCCCcchhHHHHHHHHHHhccC
Confidence 2 223444432 2346899999999873210 0 0 01125788999999999
Q ss_pred CceEeecc
Q 026036 181 DSQVGHLT 188 (244)
Q Consensus 181 G~~~~~~~ 188 (244)
|+++++++
T Consensus 389 Gr~aiVlP 396 (544)
T 3khk_A 389 GSMALLLA 396 (544)
T ss_dssp EEEEEEEE
T ss_pred ceEEEEec
Confidence 99888743
|
| >2r6z_A UPF0341 protein in RSP 3' region; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 1.80A {Neisseria gonorrhoeae} | Back alignment and structure |
|---|
Probab=98.97 E-value=2e-10 Score=92.92 Aligned_cols=82 Identities=12% Similarity=0.161 Sum_probs=59.1
Q ss_pred CcccCCeEEEeCCCCcHHHHHHHHhCCCeEEEEeCCh-------HHHHHHHHHhHHhcCCCCCcceEeeecCCCCC-CCC
Q 026036 74 EWIERRRCIELGSGTGALAIFLRKAMNLDITTSDYND-------QEIEDNIAYNSTTNGITPALPHIKHSWGDAFP-IPN 145 (244)
Q Consensus 74 ~~~~~~~VLdlG~G~G~~~~~~a~~~~~~v~~~D~~~-------~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~ 145 (244)
...++.+|||+|||+|..++.++.. +.+|+++|+++ .++ +.+++|...+++.+++..+..+..+.++ ..+
T Consensus 80 ~~~~~~~VLDlgcG~G~~a~~lA~~-g~~V~~vD~s~~~~~ll~~~l-~~a~~n~~~~~~~~ri~~~~~d~~~~l~~~~~ 157 (258)
T 2r6z_A 80 NHTAHPTVWDATAGLGRDSFVLASL-GLTVTAFEQHPAVACLLSDGI-RRALLNPETQDTAARINLHFGNAAEQMPALVK 157 (258)
T ss_dssp TGGGCCCEEETTCTTCHHHHHHHHT-TCCEEEEECCHHHHHHHHHHH-HHHHHSHHHHHHHTTEEEEESCHHHHHHHHHH
T ss_pred CcCCcCeEEEeeCccCHHHHHHHHh-CCEEEEEECChhhhHHHHHHH-HHHHhHHHhhCCccCeEEEECCHHHHHHhhhc
Confidence 3446789999999999999999986 67999999999 887 7778887776654334444433322222 122
Q ss_pred --CCccEEEEcccc
Q 026036 146 --PDWDLILASDIL 157 (244)
Q Consensus 146 --~~fD~I~~~~~l 157 (244)
++||+|++..++
T Consensus 158 ~~~~fD~V~~dP~~ 171 (258)
T 2r6z_A 158 TQGKPDIVYLDPMY 171 (258)
T ss_dssp HHCCCSEEEECCCC
T ss_pred cCCCccEEEECCCC
Confidence 579999997665
|
| >3gru_A Dimethyladenosine transferase; rossman fold, ribosomal assem adenosyl-L-methionine, rRNA, methyltransferase, RNA-binding processing; HET: AMP; 1.60A {Methanocaldococcus jannaschii} PDB: 3grr_A* 3grv_A* 3gry_A* 3fyd_A 3fyc_A* | Back alignment and structure |
|---|
Probab=98.94 E-value=3.3e-09 Score=87.29 Aligned_cols=85 Identities=18% Similarity=0.235 Sum_probs=61.4
Q ss_pred HHHHHhhccCcccCCeEEEeCCCCcHHHHHHHHhCCCeEEEEeCChHHHHHHHHHhHHhcCCCCCcceEeeecCCCC--C
Q 026036 65 FAEWLMHHREWIERRRCIELGSGTGALAIFLRKAMNLDITTSDYNDQEIEDNIAYNSTTNGITPALPHIKHSWGDAF--P 142 (244)
Q Consensus 65 l~~~~~~~~~~~~~~~VLdlG~G~G~~~~~~a~~~~~~v~~~D~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~ 142 (244)
+.+.+.+.....++.+|||||||+|.++..+++. +.+|+++|+++.++ +.++++... . .+ +.+..+|.+ +
T Consensus 38 i~~~Iv~~l~~~~~~~VLEIG~G~G~lT~~La~~-~~~V~aVEid~~li-~~a~~~~~~--~-~~---v~vi~gD~l~~~ 109 (295)
T 3gru_A 38 FVNKAVESANLTKDDVVLEIGLGKGILTEELAKN-AKKVYVIEIDKSLE-PYANKLKEL--Y-NN---IEIIWGDALKVD 109 (295)
T ss_dssp HHHHHHHHTTCCTTCEEEEECCTTSHHHHHHHHH-SSEEEEEESCGGGH-HHHHHHHHH--C-SS---EEEEESCTTTSC
T ss_pred HHHHHHHhcCCCCcCEEEEECCCchHHHHHHHhc-CCEEEEEECCHHHH-HHHHHHhcc--C-CC---eEEEECchhhCC
Confidence 4455555556668889999999999999999987 78999999999987 777776652 1 12 233344433 3
Q ss_pred CCCCCccEEEEcccc
Q 026036 143 IPNPDWDLILASDIL 157 (244)
Q Consensus 143 ~~~~~fD~I~~~~~l 157 (244)
+...+||+|+++.++
T Consensus 110 ~~~~~fD~Iv~NlPy 124 (295)
T 3gru_A 110 LNKLDFNKVVANLPY 124 (295)
T ss_dssp GGGSCCSEEEEECCG
T ss_pred cccCCccEEEEeCcc
Confidence 334479999998664
|
| >3s1s_A Restriction endonuclease bpusi; PD--(D/E)XK catalytic motif, gamma-N6M-adenosine methyltrans S-adenosyl-methionine binding, hydrolase; HET: SAH; 2.35A {Bacillus pumilus} | Back alignment and structure |
|---|
Probab=98.94 E-value=8.8e-09 Score=94.04 Aligned_cols=112 Identities=8% Similarity=-0.009 Sum_probs=73.8
Q ss_pred ccCCeEEEeCCCCcHHHHHHHHhCC----CeEEEEeCChHHHHHHH--HHhHHhcCCCCCcceEeeecCCCCC---CCCC
Q 026036 76 IERRRCIELGSGTGALAIFLRKAMN----LDITTSDYNDQEIEDNI--AYNSTTNGITPALPHIKHSWGDAFP---IPNP 146 (244)
Q Consensus 76 ~~~~~VLdlG~G~G~~~~~~a~~~~----~~v~~~D~~~~~l~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~ 146 (244)
.++.+|||.|||+|.+.+.++.... .+++|+|+++.++ +.+ +.|+..|.+...+....+...+.+. ....
T Consensus 320 ~~g~rVLDPaCGSG~FLIaaA~~l~ei~~~~IyGvEIDp~Al-~LAK~RlNL~lN~LlhGi~~~~I~~dD~L~~~~~~~~ 398 (878)
T 3s1s_A 320 TEDEVISDPAAGSGNLLATVSAGFNNVMPRQIWANDIETLFL-ELLSIRLGLLFPQLVSSNNAPTITGEDVCSLNPEDFA 398 (878)
T ss_dssp CTTCEEEETTCTTSHHHHHHHHTSTTCCGGGEEEECSCGGGH-HHHHHHHHTTSTTTCBTTBCCEEECCCGGGCCGGGGT
T ss_pred CCCCEEEECCCCccHHHHHHHHHhcccCCCeEEEEECCHHHH-HHHHHHHHHHHhhhhcCCCcceEEecchhcccccccC
Confidence 3578999999999999999887653 5799999999876 666 5666554332222221222222221 2345
Q ss_pred CccEEEEcccccCCcChH--------------------------HHHHHHHHHHHhcCCCCceEeecc
Q 026036 147 DWDLILASDILLYVKQYS--------------------------NLIKSLSVLLKSYKPKDSQVGHLT 188 (244)
Q Consensus 147 ~fD~I~~~~~l~~~~~~~--------------------------~l~~~l~~~~~~lk~gG~~~~~~~ 188 (244)
+||+|++|+++-.....+ .....++.+.+.|+|||+++++++
T Consensus 399 kFDVVIgNPPYg~~~~~~~e~kd~~~r~~~g~p~~p~s~~G~~DLy~aFIe~Al~lLKpGGrLAfIlP 466 (878)
T 3s1s_A 399 NVSVVVMNPPYVSGVTDPAIKRKFAHKIIQLTGNRPQTLFGQIGVEALFLELVTELVQDGTVISAIMP 466 (878)
T ss_dssp TEEEEEECCBCCSSCCCHHHHHHHHHHHHHHHSSCCSSCSSSCCHHHHHHHHHHHHSCTTCEEEEEEE
T ss_pred CCCEEEECCCccccccchhhhhhHHHHhhhhccccccccccccchHHHHHHHHHHhcCCCcEEEEEEC
Confidence 899999999962211111 122457888999999999988843
|
| >3ll7_A Putative methyltransferase; methytransferase, structural genomics, MCSG, PSI-2, protein initiative; HET: MSE; 1.80A {Porphyromonas gingivalis} | Back alignment and structure |
|---|
Probab=98.92 E-value=5.9e-10 Score=95.47 Aligned_cols=91 Identities=13% Similarity=0.055 Sum_probs=63.6
Q ss_pred HHHHHHHHhhccCcccCCeEEEeCCCCcHHHHHHHHhCCCeEEEEeCChHHHHHHHHHhHHhc--CCCCCcceEeeecCC
Q 026036 62 TFSFAEWLMHHREWIERRRCIELGSGTGALAIFLRKAMNLDITTSDYNDQEIEDNIAYNSTTN--GITPALPHIKHSWGD 139 (244)
Q Consensus 62 ~~~l~~~~~~~~~~~~~~~VLdlG~G~G~~~~~~a~~~~~~v~~~D~~~~~l~~~~~~~~~~~--~~~~~~~~~~~~~~~ 139 (244)
...+++|...... +|.+|||+|||+|..++.+++. +.+|+++|+++.++ +.++.|+..+ ++ .++..+..+..+
T Consensus 80 ~e~vA~~~a~~l~--~g~~VLDLgcG~G~~al~LA~~-g~~V~~VD~s~~~l-~~Ar~N~~~~~~gl-~~i~~i~~Da~~ 154 (410)
T 3ll7_A 80 GAVTSSYKSRFIR--EGTKVVDLTGGLGIDFIALMSK-ASQGIYIERNDETA-VAARHNIPLLLNEG-KDVNILTGDFKE 154 (410)
T ss_dssp CHHHHHHGGGGSC--TTCEEEESSCSSSHHHHHHHTT-CSEEEEEESCHHHH-HHHHHHHHHHSCTT-CEEEEEESCGGG
T ss_pred HHHHHHHHHHhcC--CCCEEEEeCCCchHHHHHHHhc-CCEEEEEECCHHHH-HHHHHhHHHhccCC-CcEEEEECcHHH
Confidence 4455666443322 4889999999999999999876 67999999999997 8899998877 65 333344333322
Q ss_pred CCCC-CCCCccEEEEcccc
Q 026036 140 AFPI-PNPDWDLILASDIL 157 (244)
Q Consensus 140 ~~~~-~~~~fD~I~~~~~l 157 (244)
.++. ..++||+|++..+.
T Consensus 155 ~L~~~~~~~fDvV~lDPPr 173 (410)
T 3ll7_A 155 YLPLIKTFHPDYIYVDPAR 173 (410)
T ss_dssp SHHHHHHHCCSEEEECCEE
T ss_pred hhhhccCCCceEEEECCCC
Confidence 2111 12479999997665
|
| >3fut_A Dimethyladenosine transferase; methyltransferase, dimethyltransferase, dual-specific methyltransferase, 16S rRNA methyltransferase; 1.52A {Thermus thermophilus} PDB: 3fuu_A* 3fuv_A 3fuw_A* 3fux_A* | Back alignment and structure |
|---|
Probab=98.92 E-value=4.7e-09 Score=85.39 Aligned_cols=95 Identities=16% Similarity=0.166 Sum_probs=63.0
Q ss_pred HHHHHhhccCcccCCeEEEeCCCCcHHHHHHHHhCCCeEEEEeCChHHHHHHHHHhHHhcCCCCCcceEeeecCCCCCC-
Q 026036 65 FAEWLMHHREWIERRRCIELGSGTGALAIFLRKAMNLDITTSDYNDQEIEDNIAYNSTTNGITPALPHIKHSWGDAFPI- 143 (244)
Q Consensus 65 l~~~~~~~~~~~~~~~VLdlG~G~G~~~~~~a~~~~~~v~~~D~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~- 143 (244)
+++.+.+.....++ +|||||||+|.++..+++. +.+|+++|+++.++ +.++++... .++ .+..+|.+..
T Consensus 35 i~~~Iv~~~~~~~~-~VLEIG~G~G~lt~~L~~~-~~~V~avEid~~~~-~~l~~~~~~----~~v---~vi~~D~l~~~ 104 (271)
T 3fut_A 35 HLRRIVEAARPFTG-PVFEVGPGLGALTRALLEA-GAEVTAIEKDLRLR-PVLEETLSG----LPV---RLVFQDALLYP 104 (271)
T ss_dssp HHHHHHHHHCCCCS-CEEEECCTTSHHHHHHHHT-TCCEEEEESCGGGH-HHHHHHTTT----SSE---EEEESCGGGSC
T ss_pred HHHHHHHhcCCCCC-eEEEEeCchHHHHHHHHHc-CCEEEEEECCHHHH-HHHHHhcCC----CCE---EEEECChhhCC
Confidence 34445555556678 9999999999999999987 57999999999987 777776542 122 3333343322
Q ss_pred -CC-CCccEEEEcccccCCcChHHHHHHHH
Q 026036 144 -PN-PDWDLILASDILLYVKQYSNLIKSLS 171 (244)
Q Consensus 144 -~~-~~fD~I~~~~~l~~~~~~~~l~~~l~ 171 (244)
.. ..+|.|++|-+. +. ..+-+.+.+.
T Consensus 105 ~~~~~~~~~iv~NlPy-~i-ss~il~~ll~ 132 (271)
T 3fut_A 105 WEEVPQGSLLVANLPY-HI-ATPLVTRLLK 132 (271)
T ss_dssp GGGSCTTEEEEEEECS-SC-CHHHHHHHHH
T ss_pred hhhccCccEEEecCcc-cc-cHHHHHHHhc
Confidence 11 268999998775 43 2344444443
|
| >2b9e_A NOL1/NOP2/SUN domain family, member 5 isoform 2; methytransferase, structural genomics, structural genomics consortium, SGC; HET: SAM; 1.65A {Homo sapiens} SCOP: c.66.1.38 | Back alignment and structure |
|---|
Probab=98.92 E-value=1.2e-08 Score=84.53 Aligned_cols=78 Identities=13% Similarity=0.113 Sum_probs=57.0
Q ss_pred cccCCeEEEeCCCCcHHHHHHHHhC--CCeEEEEeCChHHHHHHHHHhHHhcCCCCCcceEeeecCCCCCCC--CCCccE
Q 026036 75 WIERRRCIELGSGTGALAIFLRKAM--NLDITTSDYNDQEIEDNIAYNSTTNGITPALPHIKHSWGDAFPIP--NPDWDL 150 (244)
Q Consensus 75 ~~~~~~VLdlG~G~G~~~~~~a~~~--~~~v~~~D~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~fD~ 150 (244)
..+|.+|||+|||+|..+..++... ..+|+++|+++.++ +.+++|+..+++. ++..+..+..+..... ..+||.
T Consensus 100 ~~~g~~VLDlcaG~G~kt~~la~~~~~~g~V~a~D~~~~~l-~~~~~n~~r~g~~-~v~~~~~D~~~~~~~~~~~~~fD~ 177 (309)
T 2b9e_A 100 PPPGSHVIDACAAPGNKTSHLAALLKNQGKIFAFDLDAKRL-ASMATLLARAGVS-CCELAEEDFLAVSPSDPRYHEVHY 177 (309)
T ss_dssp CCTTCEEEESSCTTCHHHHHHHHHHTTCSEEEEEESCHHHH-HHHHHHHHHTTCC-SEEEEECCGGGSCTTCGGGTTEEE
T ss_pred CCCCCEEEEeCCChhHHHHHHHHHhCCCCEEEEEeCCHHHH-HHHHHHHHHcCCC-eEEEEeCChHhcCccccccCCCCE
Confidence 4578899999999999999998763 47899999999987 8889999888773 3334433332221111 147999
Q ss_pred EEEc
Q 026036 151 ILAS 154 (244)
Q Consensus 151 I~~~ 154 (244)
|++.
T Consensus 178 Vl~D 181 (309)
T 2b9e_A 178 ILLD 181 (309)
T ss_dssp EEEC
T ss_pred EEEc
Confidence 9973
|
| >3lkd_A Type I restriction-modification system methyltransferase subunit; Q5M500_STRT2, STU0711, NESG, SUR80, structural genomics, PSI-2; 2.25A {Streptococcus thermophilus} | Back alignment and structure |
|---|
Probab=98.86 E-value=2.8e-08 Score=88.31 Aligned_cols=124 Identities=12% Similarity=0.011 Sum_probs=83.9
Q ss_pred HHHHHHHHhhccCcccCCeEEEeCCCCcHHHHHHHHhC----CCeEEEEeCChHHHHHHHHHhHHhcCCCCCcceEeeec
Q 026036 62 TFSFAEWLMHHREWIERRRCIELGSGTGALAIFLRKAM----NLDITTSDYNDQEIEDNIAYNSTTNGITPALPHIKHSW 137 (244)
Q Consensus 62 ~~~l~~~~~~~~~~~~~~~VLdlG~G~G~~~~~~a~~~----~~~v~~~D~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~ 137 (244)
+..|++.+.......++.+|+|.+||||.+.+.+++.. ..+++|+|+++.++ ..++.|+..+++.. ....+..
T Consensus 206 v~lmv~ll~~~~~~~~~~~VlDPaCGSG~fLi~a~~~l~~~~~~~i~G~Eid~~~~-~lA~~Nl~l~gi~~--~~~~I~~ 282 (542)
T 3lkd_A 206 AKLMTQIAFLGREDKQGFTLYDATMGSGSLLLNAKRYSRQPQTVVYFGQELNTSTY-NLARMNMILHGVPI--ENQFLHN 282 (542)
T ss_dssp HHHHHHHHHTTCTTCTTCEEEETTCTTSTTGGGHHHHCSCTTTCEEEEEESCHHHH-HHHHHHHHHTTCCG--GGEEEEE
T ss_pred HHHHHHHHhcccCCCCCCEEeecccchhHHHHHHHHHHHhccCceEEEEECcHHHH-HHHHHHHHHcCCCc--CccceEe
Confidence 33445544432223467899999999999988877663 56899999999987 88888988877731 1233444
Q ss_pred CCCCCC-----CCCCccEEEEcccccCCcC----------hH----------HHHHHHHHHHHhcC-CCCceEeecc
Q 026036 138 GDAFPI-----PNPDWDLILASDILLYVKQ----------YS----------NLIKSLSVLLKSYK-PKDSQVGHLT 188 (244)
Q Consensus 138 ~~~~~~-----~~~~fD~I~~~~~l~~~~~----------~~----------~l~~~l~~~~~~lk-~gG~~~~~~~ 188 (244)
++.+.. ...+||+|++|+++-.... .. .-...++.+.+.|+ |||+++++++
T Consensus 283 gDtL~~d~p~~~~~~fD~IvaNPPf~~~~~~~~~~~~d~rf~~~G~~~~~s~~~~~Fl~~~l~~Lk~~gGr~a~VlP 359 (542)
T 3lkd_A 283 ADTLDEDWPTQEPTNFDGVLMNPPYSAKWSASSGFMDDPRFSPFGKLAPKSKADFAFLLHGYYHLKQDNGVMAIVLP 359 (542)
T ss_dssp SCTTTSCSCCSSCCCBSEEEECCCTTCCCCCCGGGGGSTTTGGGSSCCCTTCCHHHHHHHHHHTBCTTTCEEEEEEE
T ss_pred cceecccccccccccccEEEecCCcCCccccchhhhhhhhhhhhhhcCCCchhhHHHHHHHHHHhCCCceeEEEEec
Confidence 444322 3468999999988621110 00 01247889999999 9999988743
|
| >3tqs_A Ribosomal RNA small subunit methyltransferase A; protein synthesis; 1.98A {Coxiella burnetii} SCOP: c.66.1.0 | Back alignment and structure |
|---|
Probab=98.83 E-value=7.7e-09 Score=83.46 Aligned_cols=84 Identities=11% Similarity=0.138 Sum_probs=58.1
Q ss_pred HHHHHhhccCcccCCeEEEeCCCCcHHHHHHHHhCCCeEEEEeCChHHHHHHHHHhHHhcCCCCCcceEeeecCCCCCC-
Q 026036 65 FAEWLMHHREWIERRRCIELGSGTGALAIFLRKAMNLDITTSDYNDQEIEDNIAYNSTTNGITPALPHIKHSWGDAFPI- 143 (244)
Q Consensus 65 l~~~~~~~~~~~~~~~VLdlG~G~G~~~~~~a~~~~~~v~~~D~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~- 143 (244)
+.+.+.+.....++.+|||||||+|.++..+++. +.+|+++|+++.++ +.++++... . .++..+ .+|.+..
T Consensus 17 i~~~iv~~~~~~~~~~VLEIG~G~G~lt~~La~~-~~~V~avEid~~~~-~~~~~~~~~--~-~~v~~i---~~D~~~~~ 88 (255)
T 3tqs_A 17 VLQKIVSAIHPQKTDTLVEIGPGRGALTDYLLTE-CDNLALVEIDRDLV-AFLQKKYNQ--Q-KNITIY---QNDALQFD 88 (255)
T ss_dssp HHHHHHHHHCCCTTCEEEEECCTTTTTHHHHTTT-SSEEEEEECCHHHH-HHHHHHHTT--C-TTEEEE---ESCTTTCC
T ss_pred HHHHHHHhcCCCCcCEEEEEcccccHHHHHHHHh-CCEEEEEECCHHHH-HHHHHHHhh--C-CCcEEE---EcchHhCC
Confidence 4444555555667889999999999999999877 58999999999987 777776653 1 223333 3333222
Q ss_pred -C----CCCccEEEEcccc
Q 026036 144 -P----NPDWDLILASDIL 157 (244)
Q Consensus 144 -~----~~~fD~I~~~~~l 157 (244)
. .++|| |++|.+.
T Consensus 89 ~~~~~~~~~~~-vv~NlPY 106 (255)
T 3tqs_A 89 FSSVKTDKPLR-VVGNLPY 106 (255)
T ss_dssp GGGSCCSSCEE-EEEECCH
T ss_pred HHHhccCCCeE-EEecCCc
Confidence 1 24688 7777664
|
| >1m6y_A S-adenosyl-methyltransferase MRAW; SAM-dependent methyltransferase fold, protein-cofactor product complex, structural genomics, PSI; HET: SAH; 1.90A {Thermotoga maritima} SCOP: a.60.13.1 c.66.1.23 PDB: 1n2x_A* | Back alignment and structure |
|---|
Probab=98.77 E-value=5.1e-09 Score=86.44 Aligned_cols=83 Identities=12% Similarity=0.016 Sum_probs=59.0
Q ss_pred hccCcccCCeEEEeCCCCcHHHHHHHHhC-CCeEEEEeCChHHHHHHHHHhHHhcCCCCCcceEeeecCCCC---C-CCC
Q 026036 71 HHREWIERRRCIELGSGTGALAIFLRKAM-NLDITTSDYNDQEIEDNIAYNSTTNGITPALPHIKHSWGDAF---P-IPN 145 (244)
Q Consensus 71 ~~~~~~~~~~VLdlG~G~G~~~~~~a~~~-~~~v~~~D~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~-~~~ 145 (244)
......++.+|||+|||+|..+..+++.. +.+|+++|+++.++ +.+++|+..++ .++..+..+..+.. . ...
T Consensus 20 ~~L~~~~g~~vLD~g~G~G~~s~~la~~~~~~~VigvD~d~~al-~~A~~~~~~~g--~~v~~v~~d~~~l~~~l~~~g~ 96 (301)
T 1m6y_A 20 EFLKPEDEKIILDCTVGEGGHSRAILEHCPGCRIIGIDVDSEVL-RIAEEKLKEFS--DRVSLFKVSYREADFLLKTLGI 96 (301)
T ss_dssp HHHCCCTTCEEEETTCTTSHHHHHHHHHCTTCEEEEEESCHHHH-HHHHHHTGGGT--TTEEEEECCGGGHHHHHHHTTC
T ss_pred HhcCCCCCCEEEEEeCCcCHHHHHHHHHCCCCEEEEEECCHHHH-HHHHHHHHhcC--CcEEEEECCHHHHHHHHHhcCC
Confidence 33345578899999999999999999886 68999999999998 88888877655 23444443332210 0 011
Q ss_pred CCccEEEEccc
Q 026036 146 PDWDLILASDI 156 (244)
Q Consensus 146 ~~fD~I~~~~~ 156 (244)
.+||.|++...
T Consensus 97 ~~~D~Vl~D~g 107 (301)
T 1m6y_A 97 EKVDGILMDLG 107 (301)
T ss_dssp SCEEEEEEECS
T ss_pred CCCCEEEEcCc
Confidence 47999998554
|
| >4gqb_A Protein arginine N-methyltransferase 5; TIM barrel, beta-propeller, methyltransferase, methylation, transferase-protein binding complex; HET: 0XU; 2.06A {Homo sapiens} PDB: 4g56_A* | Back alignment and structure |
|---|
Probab=98.73 E-value=1.9e-08 Score=90.36 Aligned_cols=105 Identities=11% Similarity=0.021 Sum_probs=70.1
Q ss_pred CcccCCeEEEeCCCCcHHHHHH---HHhCCC--eEEEEeCChHHHHHHHHHhHHhcCCCCCcceEeeecCCCCCCCCCCc
Q 026036 74 EWIERRRCIELGSGTGALAIFL---RKAMNL--DITTSDYNDQEIEDNIAYNSTTNGITPALPHIKHSWGDAFPIPNPDW 148 (244)
Q Consensus 74 ~~~~~~~VLdlG~G~G~~~~~~---a~~~~~--~v~~~D~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f 148 (244)
...++..|||+|||+|.++..+ ++..+. +|+++|.|+.+ ..+++.+..|+..+++..++.+..+- . .+++.
T Consensus 354 ~~~~~~vVldVGaGrGpLv~~al~A~a~~~~~vkVyAVEknp~A--~~a~~~v~~N~~~dkVtVI~gd~eev-~-LPEKV 429 (637)
T 4gqb_A 354 KDTNVQVLMVLGAGRGPLVNASLRAAKQADRRIKLYAVEKNPNA--VVTLENWQFEEWGSQVTVVSSDMREW-V-APEKA 429 (637)
T ss_dssp TTTCEEEEEEESCTTSHHHHHHHHHHHHTTCEEEEEEEESCHHH--HHHHHHHHHHTTGGGEEEEESCTTTC-C-CSSCE
T ss_pred ccCCCcEEEEECCCCcHHHHHHHHHHHhcCCCcEEEEEECCHHH--HHHHHHHHhccCCCeEEEEeCcceec-c-CCccc
Confidence 3345568999999999995444 444344 68999999854 46677788888877777776555432 2 23689
Q ss_pred cEEEEcccccCCcChHHHHHHHHHHHHhcCCCCce
Q 026036 149 DLILASDILLYVKQYSNLIKSLSVLLKSYKPKDSQ 183 (244)
Q Consensus 149 D~I~~~~~l~~~~~~~~l~~~l~~~~~~lk~gG~~ 183 (244)
|+||+--+=|. ...+.....+....+.|||||.+
T Consensus 430 DIIVSEwMG~f-Ll~E~mlevL~Ardr~LKPgGim 463 (637)
T 4gqb_A 430 DIIVSELLGSF-ADNELSPECLDGAQHFLKDDGVS 463 (637)
T ss_dssp EEEECCCCBTT-BGGGCHHHHHHHHGGGEEEEEEE
T ss_pred CEEEEEcCccc-ccccCCHHHHHHHHHhcCCCcEE
Confidence 99998322111 11222236777778999999964
|
| >2oyr_A UPF0341 protein YHIQ; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; HET: SAH; 2.00A {Shigella flexneri 2A} SCOP: c.66.1.55 PDB: 2pgx_A 2pkw_A | Back alignment and structure |
|---|
Probab=98.73 E-value=1e-08 Score=82.65 Aligned_cols=84 Identities=14% Similarity=0.093 Sum_probs=52.3
Q ss_pred cccC--CeEEEeCCCCcHHHHHHHHhCCCeEEEEeCChHHHHHHHHHhHH-------hcC-CCCCcceEeeecCCCCCCC
Q 026036 75 WIER--RRCIELGSGTGALAIFLRKAMNLDITTSDYNDQEIEDNIAYNST-------TNG-ITPALPHIKHSWGDAFPIP 144 (244)
Q Consensus 75 ~~~~--~~VLdlG~G~G~~~~~~a~~~~~~v~~~D~~~~~l~~~~~~~~~-------~~~-~~~~~~~~~~~~~~~~~~~ 144 (244)
..++ .+|||+|||+|..++.++.. +++|+++|+++.+. +.++.++. .++ +..++..+..+..+.++..
T Consensus 84 l~~g~~~~VLDl~~G~G~dal~lA~~-g~~V~~vE~~~~~~-~l~~~~l~~a~~~~~~~~~l~~~i~~~~~D~~~~L~~~ 161 (258)
T 2oyr_A 84 IKGDYLPDVVDATAGLGRDAFVLASV-GCRVRMLERNPVVA-ALLDDGLARGYADAEIGGWLQERLQLIHASSLTALTDI 161 (258)
T ss_dssp CBTTBCCCEEETTCTTCHHHHHHHHH-TCCEEEEECCHHHH-HHHHHHHHHHHHCTTTHHHHHHHEEEEESCHHHHSTTC
T ss_pred ccCCCCCEEEEcCCcCCHHHHHHHHc-CCEEEEEECCHHHH-HHHHHHHHHHHhhHhhhhhhhcCEEEEECCHHHHHHhC
Confidence 3456 89999999999999999988 56899999999753 44443332 222 1112223322222223322
Q ss_pred CCCccEEEEcccccCCc
Q 026036 145 NPDWDLILASDILLYVK 161 (244)
Q Consensus 145 ~~~fD~I~~~~~l~~~~ 161 (244)
..+||+|++..++ .+.
T Consensus 162 ~~~fDvV~lDP~y-~~~ 177 (258)
T 2oyr_A 162 TPRPQVVYLDPMF-PHK 177 (258)
T ss_dssp SSCCSEEEECCCC-CCC
T ss_pred cccCCEEEEcCCC-CCc
Confidence 3479999986665 443
|
| >3cvo_A Methyltransferase-like protein of unknown functio; rossman fold, structural genomics, joint center for structur genomics, JCSG; HET: MSE PG4; 1.80A {Silicibacter pomeroyi dss-3} | Back alignment and structure |
|---|
Probab=98.71 E-value=1.6e-07 Score=72.75 Aligned_cols=99 Identities=12% Similarity=0.079 Sum_probs=66.4
Q ss_pred cCCeEEEeCCCCcHHHHHHHHhCCCeEEEEeCChHHHHHHHHHhHHhcCC--CCCcceEeeecCCC--------------
Q 026036 77 ERRRCIELGSGTGALAIFLRKAMNLDITTSDYNDQEIEDNIAYNSTTNGI--TPALPHIKHSWGDA-------------- 140 (244)
Q Consensus 77 ~~~~VLdlG~G~G~~~~~~a~~~~~~v~~~D~~~~~l~~~~~~~~~~~~~--~~~~~~~~~~~~~~-------------- 140 (244)
+.++|||+||| ..++.+|+..+.+|+.+|.+++.. +.++.+...++. ..++..+..+..+.
T Consensus 30 ~a~~VLEiGtG--ySTl~lA~~~~g~VvtvE~d~~~~-~~ar~~l~~~g~~~~~~I~~~~gda~~~~~wg~p~~~~~~~~ 106 (202)
T 3cvo_A 30 EAEVILEYGSG--GSTVVAAELPGKHVTSVESDRAWA-RMMKAWLAANPPAEGTEVNIVWTDIGPTGDWGHPVSDAKWRS 106 (202)
T ss_dssp HCSEEEEESCS--HHHHHHHTSTTCEEEEEESCHHHH-HHHHHHHHHSCCCTTCEEEEEECCCSSBCGGGCBSSSTTGGG
T ss_pred CCCEEEEECch--HHHHHHHHcCCCEEEEEeCCHHHH-HHHHHHHHHcCCCCCCceEEEEeCchhhhcccccccchhhhh
Confidence 55799999984 667777764368999999999876 888888888776 44444443322111
Q ss_pred CC--------C-CCCCccEEEEcccccCCcChHHHHHHHHHHHHhcCCCCceEee
Q 026036 141 FP--------I-PNPDWDLILASDILLYVKQYSNLIKSLSVLLKSYKPKDSQVGH 186 (244)
Q Consensus 141 ~~--------~-~~~~fD~I~~~~~l~~~~~~~~l~~~l~~~~~~lk~gG~~~~~ 186 (244)
++ . ..++||+|+.-.- .. ...+..+.+.|+|||.+++-
T Consensus 107 l~~~~~~i~~~~~~~~fDlIfIDg~------k~--~~~~~~~l~~l~~GG~Iv~D 153 (202)
T 3cvo_A 107 YPDYPLAVWRTEGFRHPDVVLVDGR------FR--VGCALATAFSITRPVTLLFD 153 (202)
T ss_dssp TTHHHHGGGGCTTCCCCSEEEECSS------SH--HHHHHHHHHHCSSCEEEEET
T ss_pred HHHHhhhhhccccCCCCCEEEEeCC------Cc--hhHHHHHHHhcCCCeEEEEe
Confidence 11 1 1267999998322 11 15555677999999987654
|
| >2k4m_A TR8_protein, UPF0146 protein MTH_1000; alpha+beta, rossman fold, structural genomics, PSI-2; NMR {Methanothermobacterthermautotrophicus str} | Back alignment and structure |
|---|
Probab=98.68 E-value=2.6e-08 Score=72.29 Aligned_cols=98 Identities=13% Similarity=0.124 Sum_probs=64.8
Q ss_pred HHHHHHHHhhccCcccCCeEEEeCCCCc-HHHHHHHHhCCCeEEEEeCChHHHHHHHHHhHHhcCCCCCcceEeeecCCC
Q 026036 62 TFSFAEWLMHHREWIERRRCIELGSGTG-ALAIFLRKAMNLDITTSDYNDQEIEDNIAYNSTTNGITPALPHIKHSWGDA 140 (244)
Q Consensus 62 ~~~l~~~~~~~~~~~~~~~VLdlG~G~G-~~~~~~a~~~~~~v~~~D~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 140 (244)
-+.|++|+.+... .+.+|||||||.| ..+..++...+.+|++||+++.++ + .+.-+..++
T Consensus 22 ~e~LaeYI~~~~~--~~~rVlEVG~G~g~~vA~~La~~~g~~V~atDInp~Av-~----------------~v~dDiF~P 82 (153)
T 2k4m_A 22 WNDLAVYIIRCSG--PGTRVVEVGAGRFLYVSDYIRKHSKVDLVLTDIKPSHG-G----------------IVRDDITSP 82 (153)
T ss_dssp HHHHHHHHHHHSC--SSSEEEEETCTTCCHHHHHHHHHSCCEEEEECSSCSST-T----------------EECCCSSSC
T ss_pred HHHHHHHHHhcCC--CCCcEEEEccCCChHHHHHHHHhCCCeEEEEECCcccc-c----------------eEEccCCCC
Confidence 4578889876653 4579999999999 599999876689999999999765 2 122111121
Q ss_pred CCCCCCCccEEEEcccccCCcChHHHHHHHHHHHHhcCCCCceEee
Q 026036 141 FPIPNPDWDLILASDILLYVKQYSNLIKSLSVLLKSYKPKDSQVGH 186 (244)
Q Consensus 141 ~~~~~~~fD~I~~~~~l~~~~~~~~l~~~l~~~~~~lk~gG~~~~~ 186 (244)
....-..||+|.+..+- ++++..+.++++.. |.-+++.
T Consensus 83 ~~~~Y~~~DLIYsirPP------~El~~~i~~lA~~v--~adliI~ 120 (153)
T 2k4m_A 83 RMEIYRGAALIYSIRPP------AEIHSSLMRVADAV--GARLIIK 120 (153)
T ss_dssp CHHHHTTEEEEEEESCC------TTTHHHHHHHHHHH--TCEEEEE
T ss_pred cccccCCcCEEEEcCCC------HHHHHHHHHHHHHc--CCCEEEE
Confidence 11111379999875553 44556666777654 3444444
|
| >2qy6_A UPF0209 protein YFCK; structural genomics, unknown function, PSI-2, protein struct initiative; 2.00A {Escherichia coli} | Back alignment and structure |
|---|
Probab=98.67 E-value=1.7e-08 Score=81.40 Aligned_cols=129 Identities=12% Similarity=0.076 Sum_probs=77.7
Q ss_pred cCCeEEEeCCCCcHHHHHHHHh-------CC------CeEEEEeCCh---HHHHH----------HHHHhHHhcC-----
Q 026036 77 ERRRCIELGSGTGALAIFLRKA-------MN------LDITTSDYND---QEIED----------NIAYNSTTNG----- 125 (244)
Q Consensus 77 ~~~~VLdlG~G~G~~~~~~a~~-------~~------~~v~~~D~~~---~~l~~----------~~~~~~~~~~----- 125 (244)
++.+|||+|+|+|...+.+++. .. .+++++|..+ +++.. .++.+...-.
T Consensus 60 ~~~~ILEiGfGtG~n~l~~~~~~~~~~~~~p~~~~~~l~~isiE~~p~~~~~l~~a~~~~p~l~~~a~~l~~~w~~~~~g 139 (257)
T 2qy6_A 60 PLFVVAESGFGTGLNFLTLWQAFDQFREAHPQAQLQRLHFISFEKFPLTRADLALAHQHWPELAPWAEQLQAQWPMPLPG 139 (257)
T ss_dssp SEEEEEESCCTTSHHHHHHHHHHHHHHHHCTTSSCCEEEEEEEESSCCCHHHHHHHHTTCGGGHHHHHHHHHTCCCSCSE
T ss_pred CCCEEEEECCChHHHHHHHHHHHHhhhhhCCCCCcceeEEEEEECCcCCHHHHHHHHhcChhHHHHHHHHHHhccccccc
Confidence 4569999999999998876553 22 4799999876 44321 2333332200
Q ss_pred -----CCCCcceEeeecCCC---CCCCC----CCccEEEEcccccCCcChHHH--HHHHHHHHHhcCCCCceEeeccccc
Q 026036 126 -----ITPALPHIKHSWGDA---FPIPN----PDWDLILASDILLYVKQYSNL--IKSLSVLLKSYKPKDSQVGHLTKNE 191 (244)
Q Consensus 126 -----~~~~~~~~~~~~~~~---~~~~~----~~fD~I~~~~~l~~~~~~~~l--~~~l~~~~~~lk~gG~~~~~~~~~~ 191 (244)
.......+.+..+|. ++... ..||+|+. |.+ .....+.+ ...++.+++.|+|||+++.-
T Consensus 140 ~~r~~~~~~~~~l~l~~GDa~~~l~~~~~~~~~~~D~ifl-D~f-sp~~~p~lw~~~~l~~l~~~L~pGG~l~ty----- 212 (257)
T 2qy6_A 140 CHRLLLDEGRVTLDLWFGDINELISQLDDSLNQKVDAWFL-DGF-APAKNPDMWTQNLFNAMARLARPGGTLATF----- 212 (257)
T ss_dssp EEEEEEC--CEEEEEEESCHHHHGGGSCGGGTTCEEEEEE-CSS-CTTTCGGGCCHHHHHHHHHHEEEEEEEEES-----
T ss_pred hhheeccCCceEEEEEECcHHHHHhhcccccCCeEEEEEE-CCC-CcccChhhcCHHHHHHHHHHcCCCcEEEEE-----
Confidence 110112233444442 22222 27999998 554 33323321 37899999999999976531
Q ss_pred CCCCCCCCCCCeEEEeeeeccCccchhhHHHHHhhcCCeEEEec
Q 026036 192 QGEGTEGLPWPAFLMSWRRRIGKEDETIFFTSCENAGLEVKHLG 235 (244)
Q Consensus 192 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gf~v~~~~ 235 (244)
.. ...+...|.++||+++++.
T Consensus 213 ---------------------sa--a~~vrr~L~~aGF~v~~~~ 233 (257)
T 2qy6_A 213 ---------------------TS--AGFVRRGLQEAGFTMQKRK 233 (257)
T ss_dssp ---------------------CC--BHHHHHHHHHHTEEEEEEC
T ss_pred ---------------------eC--CHHHHHHHHHCCCEEEeCC
Confidence 01 1467788999999998753
|
| >3ftd_A Dimethyladenosine transferase; KSGA, rossmann-like fold, RNA methyltransferase, mtase, anti resistance, methyltransferase, RNA-binding; 1.44A {Aquifex aeolicus} PDB: 3ftc_A 3fte_A 3ftf_A* 3r9x_B* | Back alignment and structure |
|---|
Probab=98.66 E-value=4.9e-08 Score=78.49 Aligned_cols=55 Identities=16% Similarity=0.221 Sum_probs=44.3
Q ss_pred HHHHHhhccCcccCCeEEEeCCCCcHHHHHHHHhCCCeEEEEeCChHHHHHHHHHh
Q 026036 65 FAEWLMHHREWIERRRCIELGSGTGALAIFLRKAMNLDITTSDYNDQEIEDNIAYN 120 (244)
Q Consensus 65 l~~~~~~~~~~~~~~~VLdlG~G~G~~~~~~a~~~~~~v~~~D~~~~~l~~~~~~~ 120 (244)
+.+.+.+.....++.+|||+|||+|.++..++..+..+|+++|+++.++ +.++++
T Consensus 19 i~~~iv~~~~~~~~~~VLDiG~G~G~lt~~L~~~~~~~v~avEid~~~~-~~~~~~ 73 (249)
T 3ftd_A 19 VLKKIAEELNIEEGNTVVEVGGGTGNLTKVLLQHPLKKLYVIELDREMV-ENLKSI 73 (249)
T ss_dssp HHHHHHHHTTCCTTCEEEEEESCHHHHHHHHTTSCCSEEEEECCCHHHH-HHHTTS
T ss_pred HHHHHHHhcCCCCcCEEEEEcCchHHHHHHHHHcCCCeEEEEECCHHHH-HHHHhc
Confidence 4455555555667889999999999999999887558999999999987 666655
|
| >3evf_A RNA-directed RNA polymerase NS5; NS5 methyltransferase, RNA CAP binding, binding, capsid protein; HET: GTA SAH; 1.45A {Yellow fever virus} SCOP: c.66.1.0 PDB: 3evb_A* 3evc_A* 3evd_A* 3eve_A* 3eva_A* | Back alignment and structure |
|---|
Probab=98.65 E-value=1.9e-07 Score=75.07 Aligned_cols=126 Identities=15% Similarity=0.073 Sum_probs=79.7
Q ss_pred cceeechHHHHHHHHhhccCcccCCeEEEeCCCCcHHHHHHHHhC-CCeEEEEeCChHHHHHHHHHhHHhcCCCCCcceE
Q 026036 55 ANFLWPGTFSFAEWLMHHREWIERRRCIELGSGTGALAIFLRKAM-NLDITTSDYNDQEIEDNIAYNSTTNGITPALPHI 133 (244)
Q Consensus 55 ~~~~w~~~~~l~~~~~~~~~~~~~~~VLdlG~G~G~~~~~~a~~~-~~~v~~~D~~~~~l~~~~~~~~~~~~~~~~~~~~ 133 (244)
|.+...++..|.+.... ....++.+|||||||.|..+..++... ...|.++|+..+.. .. .. .........+
T Consensus 53 ~~YrSRaA~KL~ei~ek-~~l~~~~~VLDLGaAPGGWSQvAa~~~~~~~v~g~dVGvDl~-~~----pi-~~~~~g~~ii 125 (277)
T 3evf_A 53 GVAVSRGTAKLRWFHER-GYVKLEGRVIDLGCGRGGWCYYAAAQKEVSGVKGFTLGRDGH-EK----PM-NVQSLGWNII 125 (277)
T ss_dssp CBCSSTHHHHHHHHHHT-TSSCCCEEEEEETCTTCHHHHHHHTSTTEEEEEEECCCCTTC-CC----CC-CCCBTTGGGE
T ss_pred CCccccHHHHHHHHHHh-CCCCCCCEEEEecCCCCHHHHHHHHhcCCCcceeEEEeccCc-cc----cc-ccCcCCCCeE
Confidence 66777899999999888 556678899999999999999887654 44688888874320 00 00 0000000122
Q ss_pred eeecC-CCCCCCCCCccEEEEcccccCCcChH-----HHHHHHHHHHHhcCCC-CceEeeccc
Q 026036 134 KHSWG-DAFPIPNPDWDLILASDILLYVKQYS-----NLIKSLSVLLKSYKPK-DSQVGHLTK 189 (244)
Q Consensus 134 ~~~~~-~~~~~~~~~fD~I~~~~~l~~~~~~~-----~l~~~l~~~~~~lk~g-G~~~~~~~~ 189 (244)
.+.-. +...+..++||+|+| |+..+ .... .....++.+.+.|+|| |.|++.+..
T Consensus 126 ~~~~~~dv~~l~~~~~DlVls-D~apn-sG~~~~D~~rs~~LL~~a~~~LkpG~G~FV~KVf~ 186 (277)
T 3evf_A 126 TFKDKTDIHRLEPVKCDTLLC-DIGES-SSSSVTEGERTVRVLDTVEKWLACGVDNFCVKVLA 186 (277)
T ss_dssp EEECSCCTTTSCCCCCSEEEE-CCCCC-CSCHHHHHHHHHHHHHHHHHHHTTCCSEEEEEESC
T ss_pred EEeccceehhcCCCCccEEEe-cCccC-cCchHHHHHHHHHHHHHHHHHhCCCCCeEEEEecC
Confidence 22211 334455678999999 44324 2111 1123467778999999 998887544
|
| >3b5i_A S-adenosyl-L-methionine:salicylic acid carboxyl methyltransferase-like protein; sabath family, indole-3-acetic acid, S-AD methionine; HET: SAH; 2.75A {Arabidopsis thaliana} | Back alignment and structure |
|---|
Probab=98.55 E-value=4e-07 Score=77.16 Aligned_cols=156 Identities=12% Similarity=-0.032 Sum_probs=90.3
Q ss_pred CCeEEEeCCCCcHHHHHHH--------Hh--------CCCeEEEEeCChHHHHHHHHHhHHhcC-----------CCCCc
Q 026036 78 RRRCIELGSGTGALAIFLR--------KA--------MNLDITTSDYNDQEIEDNIAYNSTTNG-----------ITPAL 130 (244)
Q Consensus 78 ~~~VLdlG~G~G~~~~~~a--------~~--------~~~~v~~~D~~~~~l~~~~~~~~~~~~-----------~~~~~ 130 (244)
..+|+|+|||+|..++.+. +. ...+|...|+..+.. ..+=+.+.... ....-
T Consensus 53 ~~~IaDlGCssG~Nt~~~v~~ii~~i~~~~~~~~~~~pe~~v~~nDLp~NDF-n~lF~~L~~~~~~~~~~~~~~~~~~~~ 131 (374)
T 3b5i_A 53 PFTAVDLGCSSGANTVHIIDFIVKHISKRFDAAGIDPPEFTAFFSDLPSNDF-NTLFQLLPPLVSNTCMEECLAADGNRS 131 (374)
T ss_dssp CEEEEEETCCSSHHHHHHHHHHHHHHHHHHHHTTCCCCCEEEEEEECTTSCH-HHHHHHSCCBCCCC--CCC---CCCBC
T ss_pred ceEEEecCCCCChhHHHHHHHHHHHHHHHHhhcCCCCCceeEEecCCCccch-HHHHhhhhhhhhhcchhhhccccCCCc
Confidence 5789999999998887762 11 145799999988654 22222222110 00000
Q ss_pred ceEeeecC--CCCCCCCCCccEEEEcccccCCcC-hH-----------------------------------HHHHHHHH
Q 026036 131 PHIKHSWG--DAFPIPNPDWDLILASDILLYVKQ-YS-----------------------------------NLIKSLSV 172 (244)
Q Consensus 131 ~~~~~~~~--~~~~~~~~~fD~I~~~~~l~~~~~-~~-----------------------------------~l~~~l~~ 172 (244)
-.+....+ ....+++++||+|+++.++ ||.+ .+ ++...|+.
T Consensus 132 ~f~~gvpgSFy~rlfP~~S~d~v~Ss~aL-HWls~~p~~l~~~~~~~~nkg~i~~~~~~~~v~~ay~~Qf~~D~~~fL~~ 210 (374)
T 3b5i_A 132 YFVAGVPGSFYRRLFPARTIDFFHSAFSL-HWLSQVPESVTDRRSAAYNRGRVFIHGAGEKTTTAYKRQFQADLAEFLRA 210 (374)
T ss_dssp SEEEEEESCTTSCCSCTTCEEEEEEESCT-TBCSSCCGGGGCTTSTTCCTTTSSSSSCCHHHHHHHHHHHHHHHHHHHHH
T ss_pred eEEEecChhhhcccCCCcceEEEEeccee-eeeccCchhhhccccccccCCceEeCCCCHHHHHHHHHHHHHHHHHHHHH
Confidence 11111122 1234567899999999999 5532 22 45567888
Q ss_pred HHHhcCCCCceEeecccccCCCC-----------C--------CCCC---CCeEEEe-eeeccCccchhhHHHHHh-hcC
Q 026036 173 LLKSYKPKDSQVGHLTKNEQGEG-----------T--------EGLP---WPAFLMS-WRRRIGKEDETIFFTSCE-NAG 228 (244)
Q Consensus 173 ~~~~lk~gG~~~~~~~~~~~~~~-----------~--------~~~~---~~~~~~~-~~~~~~~~~~~~~~~~l~-~~G 228 (244)
.++.|+|||++++.......... . +... ...+... ..+.+. .+.+++...++ +.|
T Consensus 211 ra~eL~pGG~mvl~~~gr~~~~~~~~~~~~~~~~~~l~~al~~l~~eG~i~~e~~d~f~~P~y~-ps~~E~~~~l~~~~~ 289 (374)
T 3b5i_A 211 RAAEVKRGGAMFLVCLGRTSVDPTDQGGAGLLFGTHFQDAWDDLVREGLVAAEKRDGFNIPVYA-PSLQDFKEVVDANGS 289 (374)
T ss_dssp HHHHEEEEEEEEEEEEECCCSSTTCCHHHHHHHSSHHHHHHHHTTSSSSSCHHHHSSCCCCBCC-CCHHHHHHHHHHHCS
T ss_pred HHHHhCCCCEEEEEEecCCCCccccccchhhHHHHHHHHHHHHHHHhCCcchhhcccCCccccC-CCHHHHHHHHHhcCC
Confidence 99999999999998665433210 0 0000 0011111 112222 24688888888 589
Q ss_pred CeEEEecc
Q 026036 229 LEVKHLGS 236 (244)
Q Consensus 229 f~v~~~~~ 236 (244)
|+++++..
T Consensus 290 F~I~~le~ 297 (374)
T 3b5i_A 290 FAIDKLVV 297 (374)
T ss_dssp EEEEEEEE
T ss_pred cEEEEEEE
Confidence 99988764
|
| >3uzu_A Ribosomal RNA small subunit methyltransferase A; ssgcid, seattle structural genomics center for infectio disease; 1.75A {Burkholderia pseudomallei} | Back alignment and structure |
|---|
Probab=98.55 E-value=1e-07 Score=77.83 Aligned_cols=55 Identities=15% Similarity=0.194 Sum_probs=43.1
Q ss_pred HHHHHhhccCcccCCeEEEeCCCCcHHHHHHHHhCCC---eEEEEeCChHHHHHHHHHh
Q 026036 65 FAEWLMHHREWIERRRCIELGSGTGALAIFLRKAMNL---DITTSDYNDQEIEDNIAYN 120 (244)
Q Consensus 65 l~~~~~~~~~~~~~~~VLdlG~G~G~~~~~~a~~~~~---~v~~~D~~~~~l~~~~~~~ 120 (244)
+.+.+.+.....++.+|||||||+|.++..+++.... +|+++|+++.++ +.++++
T Consensus 30 i~~~iv~~~~~~~~~~VLEIG~G~G~lt~~La~~~~~~~~~V~avDid~~~l-~~a~~~ 87 (279)
T 3uzu_A 30 VIDAIVAAIRPERGERMVEIGPGLGALTGPVIARLATPGSPLHAVELDRDLI-GRLEQR 87 (279)
T ss_dssp HHHHHHHHHCCCTTCEEEEECCTTSTTHHHHHHHHCBTTBCEEEEECCHHHH-HHHHHH
T ss_pred HHHHHHHhcCCCCcCEEEEEccccHHHHHHHHHhCCCcCCeEEEEECCHHHH-HHHHHh
Confidence 3444555555567889999999999999999887432 299999999987 777766
|
| >1qyr_A KSGA, high level kasugamycin resistance protein, S-adenosylMet; adenosine dimethyltransferase, rRNA modification, transferase, translation; 2.10A {Escherichia coli} SCOP: c.66.1.24 PDB: 4adv_V 3tpz_A | Back alignment and structure |
|---|
Probab=98.54 E-value=1.3e-07 Score=76.03 Aligned_cols=83 Identities=11% Similarity=0.065 Sum_probs=53.9
Q ss_pred HHHHHhhccCcccCCeEEEeCCCCcHHHHHHHHhCCCe--EEEEeCChHHHHHHHHHhHHhcCCCCCcceEeeecCCCCC
Q 026036 65 FAEWLMHHREWIERRRCIELGSGTGALAIFLRKAMNLD--ITTSDYNDQEIEDNIAYNSTTNGITPALPHIKHSWGDAFP 142 (244)
Q Consensus 65 l~~~~~~~~~~~~~~~VLdlG~G~G~~~~~~a~~~~~~--v~~~D~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 142 (244)
+++.+.+.....++.+|||||||+|.++. ++. +.+ |+++|+++.++ +.++++.... ..+.+..+|...
T Consensus 9 i~~~iv~~~~~~~~~~VLEIG~G~G~lt~-l~~--~~~~~v~avEid~~~~-~~a~~~~~~~------~~v~~i~~D~~~ 78 (252)
T 1qyr_A 9 VIDSIVSAINPQKGQAMVEIGPGLAALTE-PVG--ERLDQLTVIELDRDLA-ARLQTHPFLG------PKLTIYQQDAMT 78 (252)
T ss_dssp HHHHHHHHHCCCTTCCEEEECCTTTTTHH-HHH--TTCSCEEEECCCHHHH-HHHHTCTTTG------GGEEEECSCGGG
T ss_pred HHHHHHHhcCCCCcCEEEEECCCCcHHHH-hhh--CCCCeEEEEECCHHHH-HHHHHHhccC------CceEEEECchhh
Confidence 44555555556678899999999999999 654 456 99999999987 7776654321 123343444332
Q ss_pred CC--C-----CCccEEEEcccc
Q 026036 143 IP--N-----PDWDLILASDIL 157 (244)
Q Consensus 143 ~~--~-----~~fD~I~~~~~l 157 (244)
.. . +..|.|++|-+.
T Consensus 79 ~~~~~~~~~~~~~~~vvsNlPY 100 (252)
T 1qyr_A 79 FNFGELAEKMGQPLRVFGNLPY 100 (252)
T ss_dssp CCHHHHHHHHTSCEEEEEECCT
T ss_pred CCHHHhhcccCCceEEEECCCC
Confidence 21 1 134677777664
|
| >3ua3_A Protein arginine N-methyltransferase 5; TIM-barrel, rossmann fold, beta-barrel, symmetric arginine dimethylase, SAM binding; HET: SAH; 3.00A {Caenorhabditis elegans} PDB: 3ua4_A | Back alignment and structure |
|---|
Probab=98.48 E-value=1.5e-07 Score=84.81 Aligned_cols=102 Identities=15% Similarity=0.129 Sum_probs=64.1
Q ss_pred CCeEEEeCCCCcHHHHHHHHhC--------------CCeEEEEeCChHHHHHHHHHhHHhcCCCCCcceEeeecCCCCCC
Q 026036 78 RRRCIELGSGTGALAIFLRKAM--------------NLDITTSDYNDQEIEDNIAYNSTTNGITPALPHIKHSWGDAFPI 143 (244)
Q Consensus 78 ~~~VLdlG~G~G~~~~~~a~~~--------------~~~v~~~D~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 143 (244)
++.|||+|||+|.++..+++.. ..+|+++|.++.++ ..++... .|+..+++..+..+..+- ..
T Consensus 410 ~~VVldVGaGtGpLs~~al~A~~~a~~~~~~~~~~~~~kVyAVEknp~A~-~~l~~~~-~Ng~~d~VtVI~gd~eev-~l 486 (745)
T 3ua3_A 410 TVVIYLLGGGRGPIGTKILKSEREYNNTFRQGQESLKVKLYIVEKNPNAI-VTLKYMN-VRTWKRRVTIIESDMRSL-PG 486 (745)
T ss_dssp EEEEEEESCTTCHHHHHHHHHHHHHHHHHSTTSCCCEEEEEEEECCHHHH-HHHHHHH-HHTTTTCSEEEESCGGGH-HH
T ss_pred CcEEEEECCCCCHHHHHHHHHHHHhCccccccccccccEEEEEeCChHHH-HHHHHHH-hcCCCCeEEEEeCchhhc-cc
Confidence 4579999999999974332211 23899999999765 3333333 377777777776554332 11
Q ss_pred -----CCCCccEEEEcccccCCcChHHHHHHHHHHHHhcCCCCce
Q 026036 144 -----PNPDWDLILASDILLYVKQYSNLIKSLSVLLKSYKPKDSQ 183 (244)
Q Consensus 144 -----~~~~fD~I~~~~~l~~~~~~~~l~~~l~~~~~~lk~gG~~ 183 (244)
..++.|+||+--+=|. ...+-....+..+.+.|||||.+
T Consensus 487 p~~~~~~ekVDIIVSElmGsf-l~nEL~pe~Ld~v~r~Lkp~Gi~ 530 (745)
T 3ua3_A 487 IAKDRGFEQPDIIVSELLGSF-GDNELSPECLDGVTGFLKPTTIS 530 (745)
T ss_dssp HHHHTTCCCCSEEEECCCBTT-BGGGSHHHHHHTTGGGSCTTCEE
T ss_pred ccccCCCCcccEEEEeccccc-cchhccHHHHHHHHHhCCCCcEE
Confidence 1468999999544221 11222235666667999999953
|
| >3ufb_A Type I restriction-modification system methyltran subunit; methyltransferase activity, transferase; 1.80A {Vibrio vulnificus} | Back alignment and structure |
|---|
Probab=98.43 E-value=2.3e-06 Score=76.05 Aligned_cols=118 Identities=9% Similarity=0.087 Sum_probs=78.4
Q ss_pred HHHHHhhccCcccCCeEEEeCCCCcHHHHHHHHhC--------------CCeEEEEeCChHHHHHHHHHhHHhcCCCCCc
Q 026036 65 FAEWLMHHREWIERRRCIELGSGTGALAIFLRKAM--------------NLDITTSDYNDQEIEDNIAYNSTTNGITPAL 130 (244)
Q Consensus 65 l~~~~~~~~~~~~~~~VLdlG~G~G~~~~~~a~~~--------------~~~v~~~D~~~~~l~~~~~~~~~~~~~~~~~ 130 (244)
+++++.+...+.++.+|+|-+||||.+.+.+.... ...++|.|+++.+. ..++-|+...+..
T Consensus 205 Vv~lmv~l~~p~~~~~I~DPacGsGgfL~~a~~~l~~~~~~~~~~~~~~~~~i~G~E~~~~~~-~la~mNl~lhg~~--- 280 (530)
T 3ufb_A 205 VVRFMVEVMDPQLGESVLDPACGTGGFLVEAFEHLERQCKTVEDREVLQESSIFGGEAKSLPY-LLVQMNLLLHGLE--- 280 (530)
T ss_dssp HHHHHHHHHCCCTTCCEEETTCTTTHHHHHHHHHHHTTCCSHHHHHHHHTCCEEEECCSHHHH-HHHHHHHHHHTCS---
T ss_pred HHHHHHHhhccCCCCEEEeCCCCcchHHHHHHHHHHHhccchhHHHHHhhhhhhhhhccHHHH-HHHHHHHHhcCCc---
Confidence 44455444455678899999999999987665432 24699999999876 7788888777763
Q ss_pred ceEeeecCCCCCC------CCCCccEEEEcccccCCcCh--------------HHHHHHHHHHHHhcC-------CCCce
Q 026036 131 PHIKHSWGDAFPI------PNPDWDLILASDILLYVKQY--------------SNLIKSLSVLLKSYK-------PKDSQ 183 (244)
Q Consensus 131 ~~~~~~~~~~~~~------~~~~fD~I~~~~~l~~~~~~--------------~~l~~~l~~~~~~lk-------~gG~~ 183 (244)
...+.+++.+.. ...+||+|++|+++ ..... ..-...++.+.+.|| |||+.
T Consensus 281 -~~~I~~~dtL~~~~~~~~~~~~fD~Il~NPPf-~~~~~~~~~~~~~~~~~~~~~~~~Fl~~~l~~Lk~~~~~l~~gGr~ 358 (530)
T 3ufb_A 281 -YPRIDPENSLRFPLREMGDKDRVDVILTNPPF-GGEEEKGILGNFPEDMQTAETAMLFLQLIMRKLKRPGHGSDNGGRA 358 (530)
T ss_dssp -CCEEECSCTTCSCGGGCCGGGCBSEEEECCCS-SCBCCHHHHTTSCGGGCCCBHHHHHHHHHHHHBCCTTSSSSSCCEE
T ss_pred -cccccccccccCchhhhcccccceEEEecCCC-CccccccccccCchhcccchhHHHHHHHHHHHhhhhhhccCCCceE
Confidence 123344454432 12479999999987 32111 111245677777776 79999
Q ss_pred Eeecc
Q 026036 184 VGHLT 188 (244)
Q Consensus 184 ~~~~~ 188 (244)
+++++
T Consensus 359 avVlP 363 (530)
T 3ufb_A 359 AVVVP 363 (530)
T ss_dssp EEEEE
T ss_pred EEEec
Confidence 88844
|
| >3gcz_A Polyprotein; flavivirus, RNA capping, methyltransferase, viral enzyme STR ATP-binding, nucleotide-binding, RNA replication, structura genomics; HET: SAM; 1.70A {Yokose virus} | Back alignment and structure |
|---|
Probab=98.33 E-value=7.6e-07 Score=71.67 Aligned_cols=126 Identities=12% Similarity=0.023 Sum_probs=78.8
Q ss_pred cceeechHHHHHHHHhhccCcccCCeEEEeCCCCcHHHHHHHHhC-CCeEEEEeCChHHHHHHHHHhHHhcCCCCCcceE
Q 026036 55 ANFLWPGTFSFAEWLMHHREWIERRRCIELGSGTGALAIFLRKAM-NLDITTSDYNDQEIEDNIAYNSTTNGITPALPHI 133 (244)
Q Consensus 55 ~~~~w~~~~~l~~~~~~~~~~~~~~~VLdlG~G~G~~~~~~a~~~-~~~v~~~D~~~~~l~~~~~~~~~~~~~~~~~~~~ 133 (244)
|.+...++..|.+...+. .+.++.+|||||||.|..+..++... ...|.++|+...+. ..... .. .. ....+
T Consensus 69 g~YrSRAAfKL~ei~eK~-~Lk~~~~VLDLGaAPGGWsQvAa~~~gv~sV~GvdvG~d~~-~~pi~-~~--~~--g~~ii 141 (282)
T 3gcz_A 69 GIAVSRGSAKLRWMEERG-YVKPTGIVVDLGCGRGGWSYYAASLKNVKKVMAFTLGVQGH-EKPIM-RT--TL--GWNLI 141 (282)
T ss_dssp SBCSSTHHHHHHHHHHTT-SCCCCEEEEEETCTTCHHHHHHHTSTTEEEEEEECCCCTTS-CCCCC-CC--BT--TGGGE
T ss_pred CCEecHHHHHHHHHHHhc-CCCCCCEEEEeCCCCCHHHHHHHHhcCCCeeeeEEeccCcc-ccccc-cc--cC--CCceE
Confidence 666777999999988876 66788899999999999999888554 45699999976421 10000 00 00 01112
Q ss_pred eeecC-CCCCCCCCCccEEEEcccccCCcChH-----HHHHHHHHHHHhcCCC--CceEeeccc
Q 026036 134 KHSWG-DAFPIPNPDWDLILASDILLYVKQYS-----NLIKSLSVLLKSYKPK--DSQVGHLTK 189 (244)
Q Consensus 134 ~~~~~-~~~~~~~~~fD~I~~~~~l~~~~~~~-----~l~~~l~~~~~~lk~g--G~~~~~~~~ 189 (244)
.+... +...+...++|+|+| |+-.+ .... .....+.-+.+.|+|| |.|++-+..
T Consensus 142 ~~~~~~dv~~l~~~~~DvVLS-DmApn-sG~~~~D~~rs~~LL~~A~~~Lk~g~~G~Fv~KvF~ 203 (282)
T 3gcz_A 142 RFKDKTDVFNMEVIPGDTLLC-DIGES-SPSIAVEEQRTLRVLNCAKQWLQEGNYTEFCIKVLC 203 (282)
T ss_dssp EEECSCCGGGSCCCCCSEEEE-CCCCC-CSCHHHHHHHHHHHHHHHHHHHHHHCCCEEEEEESC
T ss_pred EeeCCcchhhcCCCCcCEEEe-cCccC-CCChHHHHHHHHHHHHHHHHHcCCCCCCcEEEEEec
Confidence 22211 222344578999999 44424 2221 1123466667899999 998877444
|
| >4fzv_A Putative methyltransferase NSUN4; mterf fold, methyltransferase fold, rRNA methyltransferase, mitochondria, transferase; HET: MSE SAM; 2.00A {Homo sapiens} PDB: 4fp9_A* | Back alignment and structure |
|---|
Probab=98.29 E-value=9e-07 Score=74.60 Aligned_cols=111 Identities=13% Similarity=0.083 Sum_probs=72.0
Q ss_pred CcccCCeEEEeCCCCcHHHHHHHHhC-CCeEEEEeCChHHHHHHHHHhHHhcCCCCC--cceEeeecCCCCC---CCCCC
Q 026036 74 EWIERRRCIELGSGTGALAIFLRKAM-NLDITTSDYNDQEIEDNIAYNSTTNGITPA--LPHIKHSWGDAFP---IPNPD 147 (244)
Q Consensus 74 ~~~~~~~VLdlG~G~G~~~~~~a~~~-~~~v~~~D~~~~~l~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~---~~~~~ 147 (244)
.+.+|.+|||++||.|.=+.+++..+ ..+|+++|+++.-+ ..+++|+...+.... ...+.....|... ...+.
T Consensus 145 ~~~pg~~VLD~CAaPGGKT~~la~~~~~~~l~A~D~~~~R~-~~l~~~l~r~~~~~~~~~~~v~v~~~D~~~~~~~~~~~ 223 (359)
T 4fzv_A 145 GLQPGDIVLDLCAAPGGKTLALLQTGCCRNLAANDLSPSRI-ARLQKILHSYVPEEIRDGNQVRVTSWDGRKWGELEGDT 223 (359)
T ss_dssp CCCTTEEEEESSCTTCHHHHHHHHTTCEEEEEEECSCHHHH-HHHHHHHHHHSCTTTTTSSSEEEECCCGGGHHHHSTTC
T ss_pred CCCCCCEEEEecCCccHHHHHHHHhcCCCcEEEEcCCHHHH-HHHHHHHHHhhhhhhccCCceEEEeCchhhcchhcccc
Confidence 45688999999999999998888765 34799999999876 677777766544211 0122232223221 23468
Q ss_pred ccEEEEcccccCC---------------cC------hHHH-HHHHHHHHHhcCCCCceEee
Q 026036 148 WDLILASDILLYV---------------KQ------YSNL-IKSLSVLLKSYKPKDSQVGH 186 (244)
Q Consensus 148 fD~I~~~~~l~~~---------------~~------~~~l-~~~l~~~~~~lk~gG~~~~~ 186 (244)
||.|++-.+ +.. .. ...+ .+.|....+.+||||+++.+
T Consensus 224 fD~VLlDaP-CSg~g~g~~r~~~~~~~~~~~~~~~~l~~lQ~~iL~~a~~~lkpGG~LVYs 283 (359)
T 4fzv_A 224 YDRVLVDVP-CTTDRHSLHEEENNIFKRSRKKERQILPVLQVQLLAAGLLATKPGGHVVYS 283 (359)
T ss_dssp EEEEEEECC-CCCHHHHTTCCTTCTTSGGGHHHHHTHHHHHHHHHHHHHHTEEEEEEEEEE
T ss_pred CCEEEECCc-cCCCCCcccccChhhhhhCCHHHHHHHHHHHHHHHHHHHhcCCCCcEEEEE
Confidence 999997211 111 00 1111 36778889999999998776
|
| >3eld_A Methyltransferase; flavivirus, RNA capping, guanylyltransfer viral enzyme structure; HET: SFG; 1.90A {Wesselsbron virus} PDB: 3elu_A* 3elw_A* 3ely_A* 3emb_A* 3emd_A* | Back alignment and structure |
|---|
Probab=98.28 E-value=6.4e-06 Score=66.74 Aligned_cols=126 Identities=13% Similarity=0.070 Sum_probs=79.4
Q ss_pred cceeechHHHHHHHHhhccCcccCCeEEEeCCCCcHHHHHHHHhC-CCeEEEEeCChHHHHHHHHHhHHhcCCCCCcceE
Q 026036 55 ANFLWPGTFSFAEWLMHHREWIERRRCIELGSGTGALAIFLRKAM-NLDITTSDYNDQEIEDNIAYNSTTNGITPALPHI 133 (244)
Q Consensus 55 ~~~~w~~~~~l~~~~~~~~~~~~~~~VLdlG~G~G~~~~~~a~~~-~~~v~~~D~~~~~l~~~~~~~~~~~~~~~~~~~~ 133 (244)
|.+.-.++..|.+.... ....++.+||||||+.|..+..+++.. ...|.++|+...+. ... ... .......+
T Consensus 60 g~yrSRaa~KL~ei~ek-~l~~~g~~vlDLGaaPGgWsqva~~~~gv~sV~Gvdlg~~~~-~~P----~~~-~~~~~~iv 132 (300)
T 3eld_A 60 GISVSRGAAKIRWLHER-GYLRITGRVLDLGCGRGGWSYYAAAQKEVMSVKGYTLGIEGH-EKP----IHM-QTLGWNIV 132 (300)
T ss_dssp CCCSSTTHHHHHHHHHH-TSCCCCEEEEEETCTTCHHHHHHHTSTTEEEEEEECCCCTTS-CCC----CCC-CBTTGGGE
T ss_pred CCccchHHHHHHHHHHh-CCCCCCCEEEEcCCCCCHHHHHHHHhcCCceeeeEEeccccc-ccc----ccc-cccCCceE
Confidence 66777799999998888 555688999999999999999998754 45689999975321 000 000 00000112
Q ss_pred eeecC-CCCCCCCCCccEEEEcccccCCcChHH-----HHHHHHHHHHhcCCC-CceEeeccc
Q 026036 134 KHSWG-DAFPIPNPDWDLILASDILLYVKQYSN-----LIKSLSVLLKSYKPK-DSQVGHLTK 189 (244)
Q Consensus 134 ~~~~~-~~~~~~~~~fD~I~~~~~l~~~~~~~~-----l~~~l~~~~~~lk~g-G~~~~~~~~ 189 (244)
.+..+ +...+...++|+|+| |+-.+ ..... ....+.-+.+.|+|| |.|++-+..
T Consensus 133 ~~~~~~di~~l~~~~~DlVls-D~APn-sG~~~~D~~rs~~LL~~A~~~LkpG~G~FV~KvF~ 193 (300)
T 3eld_A 133 KFKDKSNVFTMPTEPSDTLLC-DIGES-SSNPLVERDRTMKVLENFERWKHVNTENFCVKVLA 193 (300)
T ss_dssp EEECSCCTTTSCCCCCSEEEE-CCCCC-CSSHHHHHHHHHHHHHHHHHHCCTTCCEEEEEESS
T ss_pred EeecCceeeecCCCCcCEEee-cCcCC-CCCHHHHHHHHHHHHHHHHHHhcCCCCcEEEEecc
Confidence 22211 223344568999999 55434 22221 123466677899999 998887544
|
| >2efj_A 3,7-dimethylxanthine methyltransferase; SAM-dependant methyltransferase, SAH, theobromine; HET: SAH 37T; 2.00A {Coffea canephora} PDB: 2eg5_A* | Back alignment and structure |
|---|
Probab=98.28 E-value=1.4e-05 Score=67.81 Aligned_cols=156 Identities=11% Similarity=0.009 Sum_probs=86.1
Q ss_pred CCeEEEeCCCCcHHHHHHHHh------------------CCCeEEEEeCChHHH---HHHHH---HhH-HhcCCCCCcce
Q 026036 78 RRRCIELGSGTGALAIFLRKA------------------MNLDITTSDYNDQEI---EDNIA---YNS-TTNGITPALPH 132 (244)
Q Consensus 78 ~~~VLdlG~G~G~~~~~~a~~------------------~~~~v~~~D~~~~~l---~~~~~---~~~-~~~~~~~~~~~ 132 (244)
..+|+|+||++|..++.+... ...+|+..|+..+.. -..+. ... ...+.....-+
T Consensus 53 ~~~IaDlGCssG~NT~~~v~~ii~~i~~~~~~~~~~~~~pe~~v~~nDLp~NDFN~lF~~L~~~~~~~~~~~g~~~~~~f 132 (384)
T 2efj_A 53 CFKVGDLGCASGPNTFSTVRDIVQSIDKVGQEKKNELERPTIQIFLNDLFQNDFNSVFKLLPSFYRNLEKENGRKIGSCL 132 (384)
T ss_dssp EEEEEEETCCSSHHHHHHHHHHHHHHTCC----------CEEEEEEECCTTSCHHHHHHHHHHHHHHHHHHTCCCTTSEE
T ss_pred ceEEEecCCCCCchHHHHHHHHHHHHHHHhhhcccCCCCCceEEEecCCCccchHHHHhhhhhhHhhhhhhccCCCCceE
Confidence 478999999999998877654 135699999974311 11111 111 11111001112
Q ss_pred EeeecCC--CCCCCCCCccEEEEcccccCCcC-hH------------------------------------HHHHHHHHH
Q 026036 133 IKHSWGD--AFPIPNPDWDLILASDILLYVKQ-YS------------------------------------NLIKSLSVL 173 (244)
Q Consensus 133 ~~~~~~~--~~~~~~~~fD~I~~~~~l~~~~~-~~------------------------------------~l~~~l~~~ 173 (244)
+....+. ...++.+++|+|+++.++ ||.+ .+ ++...|+.-
T Consensus 133 ~~gvpgSFy~rlfp~~S~d~v~Ss~aL-HWls~~p~~l~~~~s~~~nkg~i~i~~~sp~~v~~ay~~Qf~~D~~~FL~~R 211 (384)
T 2efj_A 133 IGAMPGSFYSRLFPEESMHFLHSCYCL-HWLSQVPSGLVTELGISVNKGCIYSSKASRPPIQKAYLDQFTKDFTTFLRIH 211 (384)
T ss_dssp EEECCSCTTSCCSCTTCEEEEEEESCT-TBCSSSCCC------CCCCTTCSSSCTTSCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred EEecchhhhhccCCCCceEEEEeccee-eecCCCchhhhccccccccCCceEecCCCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 2222221 234567899999999999 5532 22 112236666
Q ss_pred HHhcCCCCceEeecccccCC--CCC----------------CCCCCCeEEEeeeeccCccchhhHHHHHhhc-CCeEEEe
Q 026036 174 LKSYKPKDSQVGHLTKNEQG--EGT----------------EGLPWPAFLMSWRRRIGKEDETIFFTSCENA-GLEVKHL 234 (244)
Q Consensus 174 ~~~lk~gG~~~~~~~~~~~~--~~~----------------~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~-Gf~v~~~ 234 (244)
++.|+|||++++........ ... ..... .+.....+.+. .+.+++...+++. +|++.++
T Consensus 212 a~eL~pGG~mvl~~~gr~~~~~~~~~~~~l~~al~~lv~eGli~~e-k~dsf~~P~y~-ps~~E~~~~le~~g~F~i~~l 289 (384)
T 2efj_A 212 SEELISRGRMLLTFICKEDEFDHPNSMDLLEMSINDLVIEGHLEEE-KLDSFNVPIYA-PSTEEVKRIVEEEGSFEILYL 289 (384)
T ss_dssp HHHEEEEEEEEEEEECCCTTTCCCCHHHHHHHHHHHHHHHTSSCHH-HHHTCCCSBCC-CCHHHHHHHHHHHCSEEEEEE
T ss_pred HHHhccCCeEEEEEecCCCcccCcccHHHHHHHHHHHHHhCCcchh-hhcccCCcccC-CCHHHHHHHHHHcCCceEEEE
Confidence 89999999999986554432 100 00000 00000112222 2368899999987 5898887
Q ss_pred cc
Q 026036 235 GS 236 (244)
Q Consensus 235 ~~ 236 (244)
..
T Consensus 290 e~ 291 (384)
T 2efj_A 290 ET 291 (384)
T ss_dssp EE
T ss_pred EE
Confidence 53
|
| >3o4f_A Spermidine synthase; aminopropyltransferase, polyamine synthase, rossmann fold, P biosynthesis, spermidine biosynthesis, transferase; 2.90A {Escherichia coli} | Back alignment and structure |
|---|
Probab=98.25 E-value=6.4e-06 Score=67.30 Aligned_cols=107 Identities=12% Similarity=0.093 Sum_probs=70.2
Q ss_pred cCCeEEEeCCCCcHHHHHHHHhC-CCeEEEEeCChHHHHHHHHHhHHh-cCC---CCCcceEeeecCCCCCCCCCCccEE
Q 026036 77 ERRRCIELGSGTGALAIFLRKAM-NLDITTSDYNDQEIEDNIAYNSTT-NGI---TPALPHIKHSWGDAFPIPNPDWDLI 151 (244)
Q Consensus 77 ~~~~VLdlG~G~G~~~~~~a~~~-~~~v~~~D~~~~~l~~~~~~~~~~-~~~---~~~~~~~~~~~~~~~~~~~~~fD~I 151 (244)
..++||=||.|.|.....+++.. ..+|+.+|+++.++ +.+++.... +.- ..++..+.-|...-+....++||+|
T Consensus 83 ~pk~VLIiGgGdG~~~revlk~~~v~~v~~VEID~~Vv-~~a~~~lp~~~~~~~~dpRv~v~~~Dg~~~l~~~~~~yDvI 161 (294)
T 3o4f_A 83 HAKHVLIIGGGDGAMLREVTRHKNVESITMVEIDAGVV-SFCRQYLPNHNAGSYDDPRFKLVIDDGVNFVNQTSQTFDVI 161 (294)
T ss_dssp CCCEEEEESCTTSHHHHHHHTCTTCCEEEEEESCHHHH-HHHHHHCHHHHTTGGGCTTEEEEESCTTTTTSCSSCCEEEE
T ss_pred CCCeEEEECCCchHHHHHHHHcCCcceEEEEcCCHHHH-HHHHhcCccccccccCCCcEEEEechHHHHHhhccccCCEE
Confidence 45699999999999999887764 46899999999876 777765421 211 1233333333323333445689999
Q ss_pred EEcccccCCcChH-H--HHHHHHHHHHhcCCCCceEee
Q 026036 152 LASDILLYVKQYS-N--LIKSLSVLLKSYKPKDSQVGH 186 (244)
Q Consensus 152 ~~~~~l~~~~~~~-~--l~~~l~~~~~~lk~gG~~~~~ 186 (244)
+. |.. ...... . -...++.+.+.|+|||.++..
T Consensus 162 i~-D~~-dp~~~~~~L~t~eFy~~~~~~L~p~Gv~v~q 197 (294)
T 3o4f_A 162 IS-DCT-DPIGPGESLFTSAFYEGCKRCLNPGGIFVAQ 197 (294)
T ss_dssp EE-SCC-CCCCTTCCSSCCHHHHHHHHTEEEEEEEEEE
T ss_pred EE-eCC-CcCCCchhhcCHHHHHHHHHHhCCCCEEEEe
Confidence 86 433 221111 0 126788899999999987765
|
| >2px2_A Genome polyprotein [contains: capsid protein C (core protein); envelope protein M...; methyltransferase, SAH; HET: SAH; 2.00A {Murray valley encephalitis virus} PDB: 2px4_A* 2px5_A* 2pxa_A* 2pxc_A* 2px8_A* 2oy0_A* | Back alignment and structure |
|---|
Probab=98.04 E-value=3.3e-05 Score=61.26 Aligned_cols=123 Identities=13% Similarity=0.091 Sum_probs=72.1
Q ss_pred cceeechHHHHHHHHhhccCcccCCeEEEeCCCCcHHHHHHHHhCC-CeEEEEeCChH-HHHHHHHHhHHhcCCCCCcce
Q 026036 55 ANFLWPGTFSFAEWLMHHREWIERRRCIELGSGTGALAIFLRKAMN-LDITTSDYNDQ-EIEDNIAYNSTTNGITPALPH 132 (244)
Q Consensus 55 ~~~~w~~~~~l~~~~~~~~~~~~~~~VLdlG~G~G~~~~~~a~~~~-~~v~~~D~~~~-~l~~~~~~~~~~~~~~~~~~~ 132 (244)
|.+...++..|.+.-... -+.+|.+||||||+.|..+..++...+ ..|.|.++..+ .+ . ....++..+..
T Consensus 52 g~yRSRAayKL~EIdeK~-likpg~~VVDLGaAPGGWSQvAa~~~~vg~V~G~vig~D~~~-~------P~~~~~~Gv~~ 123 (269)
T 2px2_A 52 GHPVSRGTAKLRWLVERR-FVQPIGKVVDLGCGRGGWSYYAATMKNVQEVRGYTKGGPGHE-E------PMLMQSYGWNI 123 (269)
T ss_dssp SCCSSTHHHHHHHHHHTT-SCCCCEEEEEETCTTSHHHHHHTTSTTEEEEEEECCCSTTSC-C------CCCCCSTTGGG
T ss_pred CCcccHHHHHHHHHHHcC-CCCCCCEEEEcCCCCCHHHHHHhhhcCCCCceeEEEcccccc-C------CCcccCCCceE
Confidence 566677899998888776 667899999999999999999987621 13344444322 00 0 00000011223
Q ss_pred EeeecC-CCCCCCCCCccEEEEcccccCCcChHH-----HHHHHHHHHHhcCCCC-ceEeec
Q 026036 133 IKHSWG-DAFPIPNPDWDLILASDILLYVKQYSN-----LIKSLSVLLKSYKPKD-SQVGHL 187 (244)
Q Consensus 133 ~~~~~~-~~~~~~~~~fD~I~~~~~l~~~~~~~~-----l~~~l~~~~~~lk~gG-~~~~~~ 187 (244)
+.+..+ |.......++|+|+| |+--. ..... ...++.-+.+.|+||| .|++-+
T Consensus 124 i~~~~G~Df~~~~~~~~DvVLS-DMAPn-SG~~~vD~~Rs~~aL~~A~~~Lk~gG~~FvvKV 183 (269)
T 2px2_A 124 VTMKSGVDVFYKPSEISDTLLC-DIGES-SPSAEIEEQRTLRILEMVSDWLSRGPKEFCIKI 183 (269)
T ss_dssp EEEECSCCGGGSCCCCCSEEEE-CCCCC-CSCHHHHHHHHHHHHHHHHHHHTTCCSEEEEEE
T ss_pred EEeeccCCccCCCCCCCCEEEe-CCCCC-CCccHHHHHHHHHHHHHHHHHhhcCCcEEEEEE
Confidence 443323 333333457999998 44322 21111 1124555668999999 777653
|
| >2zig_A TTHA0409, putative modification methylase; methyltransferase, S- adenosylmethionine, structural genomics, NPPSFA; 2.10A {Thermus thermophilus} PDB: 2zie_A* 2zif_A | Back alignment and structure |
|---|
Probab=98.01 E-value=1.4e-05 Score=65.79 Aligned_cols=57 Identities=12% Similarity=0.000 Sum_probs=44.6
Q ss_pred HHHHHHhhccCcccCCeEEEeCCCCcHHHHHHHHhCCCeEEEEeCChHHHHHHHHHhHHh
Q 026036 64 SFAEWLMHHREWIERRRCIELGSGTGALAIFLRKAMNLDITTSDYNDQEIEDNIAYNSTT 123 (244)
Q Consensus 64 ~l~~~~~~~~~~~~~~~VLdlG~G~G~~~~~~a~~~~~~v~~~D~~~~~l~~~~~~~~~~ 123 (244)
.|.+.++.... .+|..|||++||+|..+++++.. +.+++|+|+++.++ +.+++++..
T Consensus 223 ~l~~~~i~~~~-~~~~~vlD~f~GsGt~~~~a~~~-g~~~~g~e~~~~~~-~~a~~r~~~ 279 (297)
T 2zig_A 223 ELAERLVRMFS-FVGDVVLDPFAGTGTTLIAAARW-GRRALGVELVPRYA-QLAKERFAR 279 (297)
T ss_dssp HHHHHHHHHHC-CTTCEEEETTCTTTHHHHHHHHT-TCEEEEEESCHHHH-HHHHHHHHH
T ss_pred HHHHHHHHHhC-CCCCEEEECCCCCCHHHHHHHHc-CCeEEEEeCCHHHH-HHHHHHHHH
Confidence 45555544333 47889999999999999998765 78999999999987 777776654
|
| >2wk1_A NOVP; transferase, O-methyltransferase, novobiocin, TYLF superfamily; HET: SAH; 1.40A {Streptomyces caeruleus} | Back alignment and structure |
|---|
Probab=97.97 E-value=2.1e-05 Score=64.03 Aligned_cols=103 Identities=14% Similarity=0.175 Sum_probs=69.3
Q ss_pred CCeEEEeCCCCcHHHHHHHHhC------CCeEEEEeCChH--------------------------HHHHHHHHhHHhcC
Q 026036 78 RRRCIELGSGTGALAIFLRKAM------NLDITTSDYNDQ--------------------------EIEDNIAYNSTTNG 125 (244)
Q Consensus 78 ~~~VLdlG~G~G~~~~~~a~~~------~~~v~~~D~~~~--------------------------~l~~~~~~~~~~~~ 125 (244)
..+|||+|+..|..++.++... ..+|+++|..+. .+ +.+++|....+
T Consensus 107 pg~IlEiGv~~G~Sai~ma~~l~~~g~~~~kI~~~DtfeG~pe~~~~~~~~d~~~~~~~~~~~~~~~~-~~ar~n~~~~g 185 (282)
T 2wk1_A 107 PGDLVETGVWRGGACILMRGILRAHDVRDRTVWVADSFQGIPDVGEDGYAGDRKMALHRRNSVLAVSE-EEVRRNFRNYD 185 (282)
T ss_dssp CCEEEEECCTTSHHHHHHHHHHHHTTCCSCCEEEEECSSCSCCCCTTSCHHHHHHCGGGGHHHHCCCH-HHHHHHHHHTT
T ss_pred CCcEEEeecCchHHHHHHHHHhHhcCCCCCEEEEEECCCCCCcccccccccccccccccccccchhHH-HHHHHHHHHcC
Confidence 4599999999999888876542 578999996421 12 45677777777
Q ss_pred CC-CCcceEeeecCCCCCC-CCCCccEEEEcccccCCcChHHHHHHHHHHHHhcCCCCceEee
Q 026036 126 IT-PALPHIKHSWGDAFPI-PNPDWDLILASDILLYVKQYSNLIKSLSVLLKSYKPKDSQVGH 186 (244)
Q Consensus 126 ~~-~~~~~~~~~~~~~~~~-~~~~fD~I~~~~~l~~~~~~~~l~~~l~~~~~~lk~gG~~~~~ 186 (244)
+. .++..+.-+..+.++. ..++||+|+. |+ .....-...++.+.+.|+|||.+++-
T Consensus 186 l~~~~I~li~Gda~etL~~~~~~~~d~vfI-Da----D~y~~~~~~Le~~~p~L~pGGiIv~D 243 (282)
T 2wk1_A 186 LLDEQVRFLPGWFKDTLPTAPIDTLAVLRM-DG----DLYESTWDTLTNLYPKVSVGGYVIVD 243 (282)
T ss_dssp CCSTTEEEEESCHHHHSTTCCCCCEEEEEE-CC----CSHHHHHHHHHHHGGGEEEEEEEEES
T ss_pred CCcCceEEEEeCHHHHHhhCCCCCEEEEEE-cC----CccccHHHHHHHHHhhcCCCEEEEEc
Confidence 63 5555554433333333 2468999887 43 12334457888999999999976664
|
| >1m6e_X S-adenosyl-L-methionnine:salicylic acid carboxyl methyltransferase; rossmann fold, protein-small molecule complex; HET: SAH SAL; 3.00A {Clarkia breweri} SCOP: c.66.1.35 | Back alignment and structure |
|---|
Probab=97.96 E-value=1.2e-05 Score=67.56 Aligned_cols=114 Identities=16% Similarity=0.121 Sum_probs=71.2
Q ss_pred cCCeEEEeCCCCcHHHHHHHHh---------------C--CCeEEEEeCChHHHHHHHHHhHHhcCCCCCcceEeeecCC
Q 026036 77 ERRRCIELGSGTGALAIFLRKA---------------M--NLDITTSDYNDQEIEDNIAYNSTTNGITPALPHIKHSWGD 139 (244)
Q Consensus 77 ~~~~VLdlG~G~G~~~~~~a~~---------------~--~~~v~~~D~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 139 (244)
...+|+|+||++|..++.+... . ..+|+..|+..++. ..+-+++.........-.+....+.
T Consensus 51 ~~~~IaDlGCs~G~Nt~~~v~~ii~~i~~~~~~~~~~~~pe~~v~~nDLp~NDF-ntlF~~L~~~~~~~~~~f~~gvpgS 129 (359)
T 1m6e_X 51 TRLAIADLGCSSGPNALFAVTELIKTVEELRKKMGRENSPEYQIFLNDLPGNDF-NAIFRSLPIENDVDGVCFINGVPGS 129 (359)
T ss_dssp SEECCEEESCCSSTTTTTGGGTTHHHHHHHHHSSSCSSCCEEEEEEEECTTSCH-HHHHTTTTTSCSCTTCEEEEEEESC
T ss_pred CceEEEecCCCCCcchHHHHHHHHHHHHHHHHhcCCCCCCceEEEecCCCchHH-HHHHHhcchhcccCCCEEEEecchh
Confidence 3468999999999776654332 1 35699999998776 4443333221100010122222222
Q ss_pred --CCCCCCCCccEEEEcccccCCcCh-------------------------------HHHHHHHHHHHHhcCCCCceEee
Q 026036 140 --AFPIPNPDWDLILASDILLYVKQY-------------------------------SNLIKSLSVLLKSYKPKDSQVGH 186 (244)
Q Consensus 140 --~~~~~~~~fD~I~~~~~l~~~~~~-------------------------------~~l~~~l~~~~~~lk~gG~~~~~ 186 (244)
...++.+++|+|+++.++ ||.+. .++...|+.-++.|+|||++++.
T Consensus 130 Fy~rlfp~~S~d~v~Ss~aL-HWls~~p~~l~~nkg~i~~~~~~p~~v~~ay~~Qf~~D~~~FL~~Ra~EL~pGG~mvl~ 208 (359)
T 1m6e_X 130 FYGRLFPRNTLHFIHSSYSL-MWLSQVPIGIESNKGNIYMANTCPQSVLNAYYKQFQEDHALFLRCRAQEVVPGGRMVLT 208 (359)
T ss_dssp SSSCCSCTTCBSCEEEESCT-TBCSSCCSCCCCCTTTTSSCSSSCCTTSCCSHHHHHHHHHHHHHHHHHHBCTTCEEEEE
T ss_pred hhhccCCCCceEEEEehhhh-hhcccCchhhhccCCceEecCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhcCCceEEEE
Confidence 234667899999999999 55321 23445688889999999999998
Q ss_pred cccccC
Q 026036 187 LTKNEQ 192 (244)
Q Consensus 187 ~~~~~~ 192 (244)
......
T Consensus 209 ~~gr~~ 214 (359)
T 1m6e_X 209 ILGRRS 214 (359)
T ss_dssp EEECSS
T ss_pred EecCCC
Confidence 554433
|
| >3lkz_A Non-structural protein 5; flavivirus, methyltransferase, inhibitor, P nucleotide-binding, RNA replication, viral protein; HET: SFG; 2.00A {West nile virus} | Back alignment and structure |
|---|
Probab=97.87 E-value=0.00015 Score=58.66 Aligned_cols=123 Identities=15% Similarity=0.139 Sum_probs=73.9
Q ss_pred cceeechHHHHHHHHhhccCcccCCeEEEeCCCCcHHHHHHHHhCC-CeEEEEeCChHHHHHHHHHhHHhcCCCCCcceE
Q 026036 55 ANFLWPGTFSFAEWLMHHREWIERRRCIELGSGTGALAIFLRKAMN-LDITTSDYNDQEIEDNIAYNSTTNGITPALPHI 133 (244)
Q Consensus 55 ~~~~w~~~~~l~~~~~~~~~~~~~~~VLdlG~G~G~~~~~~a~~~~-~~v~~~D~~~~~l~~~~~~~~~~~~~~~~~~~~ 133 (244)
|.++..++..|.+.... ..+.++.+||||||++|..+.+++...+ .+|+|+|+-..-- +.- ......+. ..+
T Consensus 73 g~y~SR~~~KL~ei~~~-~~l~~~~~VlDLGaapGGwsq~~~~~~gv~~V~avdvG~~~h-e~P-~~~~ql~w----~lV 145 (321)
T 3lkz_A 73 GHPVSRGTAKLRWLVER-RFLEPVGKVIDLGCGRGGWCYYMATQKRVQEVRGYTKGGPGH-EEP-QLVQSYGW----NIV 145 (321)
T ss_dssp CCCSSTHHHHHHHHHHT-TSCCCCEEEEEETCTTCHHHHHHTTCTTEEEEEEECCCSTTS-CCC-CCCCBTTG----GGE
T ss_pred CCccchHHHHHHHHHHh-cCCCCCCEEEEeCCCCCcHHHHHHhhcCCCEEEEEEcCCCCc-cCc-chhhhcCC----cce
Confidence 67777899999888777 4556888999999999999997776654 5699999976410 000 00000000 012
Q ss_pred eeecC-CCCCCCCCCccEEEEcccccCCcChHH--H---HHHHHHHHHhcCCC-CceEee
Q 026036 134 KHSWG-DAFPIPNPDWDLILASDILLYVKQYSN--L---IKSLSVLLKSYKPK-DSQVGH 186 (244)
Q Consensus 134 ~~~~~-~~~~~~~~~fD~I~~~~~l~~~~~~~~--l---~~~l~~~~~~lk~g-G~~~~~ 186 (244)
.+..+ |.......++|+|+| |+= .....+. - .++|+-+.+.|++| |.|++-
T Consensus 146 ~~~~~~Dv~~l~~~~~D~ivc-Dig-eSs~~~~ve~~Rtl~vLel~~~wL~~~~~~f~~K 203 (321)
T 3lkz_A 146 TMKSGVDVFYRPSECCDTLLC-DIG-ESSSSAEVEEHRTIRVLEMVEDWLHRGPREFCVK 203 (321)
T ss_dssp EEECSCCTTSSCCCCCSEEEE-CCC-CCCSCHHHHHHHHHHHHHHHHHHHTTCCCEEEEE
T ss_pred EEEeccCHhhCCCCCCCEEEE-ECc-cCCCChhhhhhHHHHHHHHHHHHhccCCCcEEEE
Confidence 22222 222223367999998 544 3222221 1 23555557888888 877765
|
| >2oo3_A Protein involved in catabolism of external DNA; structural genomics, unknown function, PSI-2, protein structure initiative; 2.00A {Legionella pneumophila subsp} SCOP: c.66.1.59 | Back alignment and structure |
|---|
Probab=97.78 E-value=2.1e-05 Score=63.58 Aligned_cols=128 Identities=9% Similarity=-0.005 Sum_probs=78.0
Q ss_pred ccCCeEEEeCCCCcHHHHHHHHhCCCeEEEEeCChHHHHHHHHHhHHhcCCCCCcceEeeecCCCCC---CCCCCccEEE
Q 026036 76 IERRRCIELGSGTGALAIFLRKAMNLDITTSDYNDQEIEDNIAYNSTTNGITPALPHIKHSWGDAFP---IPNPDWDLIL 152 (244)
Q Consensus 76 ~~~~~VLdlG~G~G~~~~~~a~~~~~~v~~~D~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~fD~I~ 152 (244)
..+..+||+-+|||.+++.+.+ .+.+++++|.++..+ +.+++|+.. ..++..+..+....+. .+..+||+|+
T Consensus 90 ~n~~~~LDlfaGSGaLgiEaLS-~~d~~vfvE~~~~a~-~~L~~Nl~~---~~~~~V~~~D~~~~L~~l~~~~~~fdLVf 164 (283)
T 2oo3_A 90 INLNSTLSYYPGSPYFAINQLR-SQDRLYLCELHPTEY-NFLLKLPHF---NKKVYVNHTDGVSKLNALLPPPEKRGLIF 164 (283)
T ss_dssp HSSSSSCCEEECHHHHHHHHSC-TTSEEEEECCSHHHH-HHHTTSCCT---TSCEEEECSCHHHHHHHHCSCTTSCEEEE
T ss_pred hcCCCceeEeCCcHHHHHHHcC-CCCeEEEEeCCHHHH-HHHHHHhCc---CCcEEEEeCcHHHHHHHhcCCCCCccEEE
Confidence 3567899999999999999877 468999999999886 778777754 1223333322111111 1234799999
Q ss_pred EcccccCC-cChHHHHHHHHHHHHhcCCCCceEeecccccCCCCCCCCCCCeEEEeeeeccCccchhhHHHHHhhcCCeE
Q 026036 153 ASDILLYV-KQYSNLIKSLSVLLKSYKPKDSQVGHLTKNEQGEGTEGLPWPAFLMSWRRRIGKEDETIFFTSCENAGLEV 231 (244)
Q Consensus 153 ~~~~l~~~-~~~~~l~~~l~~~~~~lk~gG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gf~v 231 (244)
+ |+-|.. .......+.+.+.. .+.|+|.+++ |+- ...+. ..+.|.+.+++.|...
T Consensus 165 i-DPPYe~k~~~~~vl~~L~~~~-~r~~~Gi~v~------------------WYP-i~~~~---~~~~~~~~l~~~~~~~ 220 (283)
T 2oo3_A 165 I-DPSYERKEEYKEIPYAIKNAY-SKFSTGLYCV------------------WYP-VVNKA---WTEQFLRKMREISSKS 220 (283)
T ss_dssp E-CCCCCSTTHHHHHHHHHHHHH-HHCTTSEEEE------------------EEE-ESSHH---HHHHHHHHHHHHCSSE
T ss_pred E-CCCCCCCcHHHHHHHHHHHhC-ccCCCeEEEE------------------EEe-ccchH---HHHHHHHHHHhcCCCe
Confidence 8 555553 33443344444433 3457886543 221 22222 2367888888877743
Q ss_pred E
Q 026036 232 K 232 (244)
Q Consensus 232 ~ 232 (244)
.
T Consensus 221 l 221 (283)
T 2oo3_A 221 V 221 (283)
T ss_dssp E
T ss_pred E
Confidence 3
|
| >4auk_A Ribosomal RNA large subunit methyltransferase M; YGDE; HET: TLA PGE; 1.90A {Escherichia coli} PDB: 4atn_A* 4b17_A* | Back alignment and structure |
|---|
Probab=97.78 E-value=0.00016 Score=60.78 Aligned_cols=49 Identities=18% Similarity=0.220 Sum_probs=37.9
Q ss_pred hHHHHHHHHhhc-------cCcccCCeEEEeCCCCcHHHHHHHHhCCCeEEEEeCCh
Q 026036 61 GTFSFAEWLMHH-------REWIERRRCIELGSGTGALAIFLRKAMNLDITTSDYND 110 (244)
Q Consensus 61 ~~~~l~~~~~~~-------~~~~~~~~VLdlG~G~G~~~~~~a~~~~~~v~~~D~~~ 110 (244)
++..|.+.+... ..+.+|.+||||||..|..+..++++ +.+|+++|..+
T Consensus 188 a~lKL~Ea~~~F~~~~~~~~~l~~G~~vlDLGAaPGGWT~~l~~r-g~~V~aVD~~~ 243 (375)
T 4auk_A 188 STLKLEEAFHVFIPADEWDERLANGMWAVDLGACPGGWTYQLVKR-NMWVYSVDNGP 243 (375)
T ss_dssp THHHHHHHHHHHSCGGGHHHHSCTTCEEEEETCTTCHHHHHHHHT-TCEEEEECSSC
T ss_pred HHHHHHHHHHhccchhhhhccCCCCCEEEEeCcCCCHHHHHHHHC-CCEEEEEEhhh
Confidence 566666654332 12457999999999999999999877 67999999875
|
| >3p8z_A Mtase, non-structural protein 5; methyltransferase, RNA, ER, transferase-transferase inhibito; HET: 36A SAH; 1.70A {Dengue virus 3} SCOP: c.66.1.25 PDB: 3p97_A* 2xbm_A* 3evg_A* | Back alignment and structure |
|---|
Probab=97.71 E-value=9.2e-05 Score=57.95 Aligned_cols=125 Identities=18% Similarity=0.178 Sum_probs=74.5
Q ss_pred CCcceeechHHHHHHHHhhccCcccCCeEEEeCCCCcHHHHHHHHhC-CCeEEEEeCChHHHHHHHHHhHHhcCCCCCcc
Q 026036 53 LNANFLWPGTFSFAEWLMHHREWIERRRCIELGSGTGALAIFLRKAM-NLDITTSDYNDQEIEDNIAYNSTTNGITPALP 131 (244)
Q Consensus 53 ~~~~~~w~~~~~l~~~~~~~~~~~~~~~VLdlG~G~G~~~~~~a~~~-~~~v~~~D~~~~~l~~~~~~~~~~~~~~~~~~ 131 (244)
.+|.+...++..|.+..... .+.++.+||||||+.|..+..++... ..+|+|+|+-..-- +.- ......+. .
T Consensus 55 ~~g~yrSRa~~KL~ei~ek~-~l~~g~~VvDLGaapGGWSq~~a~~~g~~~V~avdvG~~gh-e~P-~~~~s~gw----n 127 (267)
T 3p8z_A 55 TTHHAVSRGSAKLQWFVERN-MVIPEGRVIDLGCGRGGWSYYCAGLKKVTEVRGYTKGGPGH-EEP-VPMSTYGW----N 127 (267)
T ss_dssp CSSCCSSTHHHHHHHHHHTT-SSCCCEEEEEESCTTSHHHHHHHTSTTEEEEEEECCCSTTS-CCC-CCCCCTTT----T
T ss_pred cCCCccchHHHHHHHHHHhc-CCCCCCEEEEcCCCCCcHHHHHHHhcCCCEEEEEecCCCCc-cCc-chhhhcCc----C
Confidence 33667777899998888777 66788899999999999999777665 45699999976311 000 00011111 1
Q ss_pred eEeeecC-CCCCCCCCCccEEEEcccccCCcChH-HH---HHHHHHHHHhcCCCCceEee
Q 026036 132 HIKHSWG-DAFPIPNPDWDLILASDILLYVKQYS-NL---IKSLSVLLKSYKPKDSQVGH 186 (244)
Q Consensus 132 ~~~~~~~-~~~~~~~~~fD~I~~~~~l~~~~~~~-~l---~~~l~~~~~~lk~gG~~~~~ 186 (244)
.+++..+ |-......++|+|+| |.=-...+.. +- .++|+-+.+.|++ |.|++-
T Consensus 128 ~v~fk~gvDv~~~~~~~~Dtllc-DIgeSs~~~~vE~~RtlrvLela~~wL~~-~~fc~K 185 (267)
T 3p8z_A 128 IVKLMSGKDVFYLPPEKCDTLLC-DIGESSPSPTVEESRTIRVLKMVEPWLKN-NQFCIK 185 (267)
T ss_dssp SEEEECSCCGGGCCCCCCSEEEE-CCCCCCSCHHHHHHHHHHHHHHHGGGCSS-CEEEEE
T ss_pred ceEEEeccceeecCCccccEEEE-ecCCCCCChhhhhhHHHHHHHHHHHhccc-CCEEEE
Confidence 2333333 322233367999998 3331111111 11 2344555678888 777665
|
| >3c6k_A Spermine synthase; spermidine aminopropyltransferase, SPMSY, structural genomics, structural genomics consortium, SGC, phosphoprotein; HET: SPD MTA; 1.95A {Homo sapiens} PDB: 3c6m_A* | Back alignment and structure |
|---|
Probab=97.69 E-value=3.4e-05 Score=65.09 Aligned_cols=107 Identities=17% Similarity=0.201 Sum_probs=68.7
Q ss_pred cCCeEEEeCCCCcHHHHHHHHhCCCeEEEEeCChHHHHHHHHHhHHh-cC--CC-CCcceEeeecCCCCCC------CCC
Q 026036 77 ERRRCIELGSGTGALAIFLRKAMNLDITTSDYNDQEIEDNIAYNSTT-NG--IT-PALPHIKHSWGDAFPI------PNP 146 (244)
Q Consensus 77 ~~~~VLdlG~G~G~~~~~~a~~~~~~v~~~D~~~~~l~~~~~~~~~~-~~--~~-~~~~~~~~~~~~~~~~------~~~ 146 (244)
+.++||=||.|.|.....+.+....+|+.+|+++.++ +.+++.... ++ .. .+...+.+..+|...+ ..+
T Consensus 205 ~pkrVLIIGgGdG~~~revlkh~~~~V~~VEIDp~VV-e~ar~yfp~~~~~~~d~pr~~rv~vii~Da~~fl~~~~~~~~ 283 (381)
T 3c6k_A 205 TGKDVLILGGGDGGILCEIVKLKPKMVTMVEIDQMVI-DGCKKYMRKTCGDVLDNLKGDCYQVLIEDCIPVLKRYAKEGR 283 (381)
T ss_dssp TTCEEEEEECTTCHHHHHHHTTCCSEEEEEESCHHHH-HHHHHHCCC----CCSSSEETTEEEEESCHHHHHHHHHHHTC
T ss_pred CCCeEEEECCCcHHHHHHHHhcCCceeEEEccCHHHH-HHHHhhchhhhhhhhccccccceeeehHHHHHHHHhhhhccC
Confidence 4579999999999999988876677899999999876 777765321 11 10 1112234444443322 235
Q ss_pred CccEEEEcccccCCc--C-----hHH--HHHHHHHHHHhcCCCCceEee
Q 026036 147 DWDLILASDILLYVK--Q-----YSN--LIKSLSVLLKSYKPKDSQVGH 186 (244)
Q Consensus 147 ~fD~I~~~~~l~~~~--~-----~~~--l~~~l~~~~~~lk~gG~~~~~ 186 (244)
+||+|+. |+. ... . ... -...++.+.+.|+|||.++..
T Consensus 284 ~yDvIIv-Dl~-D~~~s~~p~g~a~~Lft~eFy~~~~~~L~p~GVlv~Q 330 (381)
T 3c6k_A 284 EFDYVIN-DLT-AVPISTSPEEDSTWEFLRLILDLSMKVLKQDGKYFTQ 330 (381)
T ss_dssp CEEEEEE-ECC-SSCCCCC----CHHHHHHHHHHHHHHTEEEEEEEEEE
T ss_pred ceeEEEE-CCC-CCcccCcccCcchHHHHHHHHHHHHHhcCCCCEEEEe
Confidence 7999987 432 110 0 011 136678889999999977654
|
| >1g60_A Adenine-specific methyltransferase MBOIIA; structural genomics, DNA methylation, S- adenosylmethionine, PSI, protein structure initiative; HET: SAM; 1.74A {Moraxella bovis} SCOP: c.66.1.11 | Back alignment and structure |
|---|
Probab=97.68 E-value=0.00011 Score=59.12 Aligned_cols=61 Identities=15% Similarity=0.192 Sum_probs=45.5
Q ss_pred HHHHHHHhhccCcccCCeEEEeCCCCcHHHHHHHHhCCCeEEEEeCChHHHHHHHHHhHHhcCC
Q 026036 63 FSFAEWLMHHREWIERRRCIELGSGTGALAIFLRKAMNLDITTSDYNDQEIEDNIAYNSTTNGI 126 (244)
Q Consensus 63 ~~l~~~~~~~~~~~~~~~VLdlG~G~G~~~~~~a~~~~~~v~~~D~~~~~l~~~~~~~~~~~~~ 126 (244)
..|.+.+..... .+|..|||..||+|..++++++. +.+++|+|+++..+ +.+++++..+++
T Consensus 199 ~~l~~~~i~~~~-~~~~~vlD~f~GsGtt~~~a~~~-gr~~ig~e~~~~~~-~~~~~r~~~~~~ 259 (260)
T 1g60_A 199 RDLIERIIRASS-NPNDLVLDCFMGSGTTAIVAKKL-GRNFIGCDMNAEYV-NQANFVLNQLEI 259 (260)
T ss_dssp HHHHHHHHHHHC-CTTCEEEESSCTTCHHHHHHHHT-TCEEEEEESCHHHH-HHHHHHHHC---
T ss_pred HHHHHHHHHHhC-CCCCEEEECCCCCCHHHHHHHHc-CCeEEEEeCCHHHH-HHHHHHHHhccC
Confidence 445555544332 47889999999999999888765 88999999999876 777777765543
|
| >2vz8_A Fatty acid synthase; transferase, phosphopantetheine, multienzyme, megasynthase, fatty acid synthesis; 3.2A {Sus scrofa} PDB: 2vz9_A* | Back alignment and structure |
|---|
Probab=97.64 E-value=9.7e-06 Score=83.54 Aligned_cols=102 Identities=16% Similarity=0.157 Sum_probs=45.8
Q ss_pred cCCeEEEeCCCCcHHHHHHHHhC------CCeEEEEeCChHHHHHHHHHhHHhcCCCCCcceEeeecCCCCCCCCCCccE
Q 026036 77 ERRRCIELGSGTGALAIFLRKAM------NLDITTSDYNDQEIEDNIAYNSTTNGITPALPHIKHSWGDAFPIPNPDWDL 150 (244)
Q Consensus 77 ~~~~VLdlG~G~G~~~~~~a~~~------~~~v~~~D~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fD~ 150 (244)
+..+|||+|+|+|..+..+.... ..+++.+|+|+... +.++.......+ ..-.++..+..++..+.||+
T Consensus 1240 ~~~~ilEigagtg~~t~~il~~l~~~~~~~~~yt~td~s~~~~-~~a~~~f~~~di----~~~~~d~~~~~~~~~~~ydl 1314 (2512)
T 2vz8_A 1240 PKMKVVEVLAGDGQLYSRIPALLNTQPVMDLDYTATDRNPQAL-EAAQAKLEQLHV----TQGQWDPANPAPGSLGKADL 1314 (2512)
T ss_dssp SEEEEEEESCSSSCCTTTHHHHTTTSSSCEEEEEEECSSSSST-TTTTTTHHHHTE----EEECCCSSCCCC-----CCE
T ss_pred CCceEEEECCCccHHHHHHHHhhcccCcccceEEEecCChHHH-HHHHHHhhhccc----ccccccccccccCCCCceeE
Confidence 56799999999997654443332 23799999997643 333322221111 11011111211223457999
Q ss_pred EEEcccccCCcChHHHHHHHHHHHHhcCCCCceEee
Q 026036 151 ILASDILLYVKQYSNLIKSLSVLLKSYKPKDSQVGH 186 (244)
Q Consensus 151 I~~~~~l~~~~~~~~l~~~l~~~~~~lk~gG~~~~~ 186 (244)
|+++++++- .+++..++.++.++|||||.+++.
T Consensus 1315 via~~vl~~---t~~~~~~l~~~~~lL~p~G~l~~~ 1347 (2512)
T 2vz8_A 1315 LVCNCALAT---LGDPAVAVGNMAATLKEGGFLLLH 1347 (2512)
T ss_dssp EEEECC-----------------------CCEEEEE
T ss_pred EEEcccccc---cccHHHHHHHHHHhcCCCcEEEEE
Confidence 999999832 345568999999999999988775
|
| >1wg8_A Predicted S-adenosylmethionine-dependent methyltransferase; S-adenosyl-methyltransferase, MRAW; HET: SAM; 2.00A {Thermus thermophilus} SCOP: a.60.13.1 c.66.1.23 | Back alignment and structure |
|---|
Probab=97.38 E-value=0.00027 Score=57.10 Aligned_cols=49 Identities=6% Similarity=-0.072 Sum_probs=40.5
Q ss_pred HhhccCcccCCeEEEeCCCCcHHHHHHHHhCCCeEEEEeCChHHHHHHHHH
Q 026036 69 LMHHREWIERRRCIELGSGTGALAIFLRKAMNLDITTSDYNDQEIEDNIAY 119 (244)
Q Consensus 69 ~~~~~~~~~~~~VLdlG~G~G~~~~~~a~~~~~~v~~~D~~~~~l~~~~~~ 119 (244)
+.+...+.++..+||.+||.|..+..+++. +.+|+|+|.++.++ +.+++
T Consensus 14 ~le~L~~~~gg~~VD~T~G~GGHS~~il~~-~g~VigiD~Dp~Ai-~~A~~ 62 (285)
T 1wg8_A 14 ALDLLAVRPGGVYVDATLGGAGHARGILER-GGRVIGLDQDPEAV-ARAKG 62 (285)
T ss_dssp HHHHHTCCTTCEEEETTCTTSHHHHHHHHT-TCEEEEEESCHHHH-HHHHH
T ss_pred HHHhhCCCCCCEEEEeCCCCcHHHHHHHHC-CCEEEEEeCCHHHH-HHHHh
Confidence 333345567889999999999999999987 78999999999987 66665
|
| >3vyw_A MNMC2; tRNA wobble uridine, modification enzyme, genetic CODE, 5- methylaminomethyl-2-thiouridine, methyltransferase; HET: SAM; 2.49A {Aquifex aeolicus} PDB: 2e58_A* | Back alignment and structure |
|---|
Probab=97.31 E-value=0.00034 Score=57.34 Aligned_cols=126 Identities=18% Similarity=0.140 Sum_probs=70.8
Q ss_pred CeEEEeCCCCcHHHHHHHH----hC-CC--eEEEEeCCh--------HHHHHHHHHhHHhc-CC-CCCcceEeeecCCC-
Q 026036 79 RRCIELGSGTGALAIFLRK----AM-NL--DITTSDYND--------QEIEDNIAYNSTTN-GI-TPALPHIKHSWGDA- 140 (244)
Q Consensus 79 ~~VLdlG~G~G~~~~~~a~----~~-~~--~v~~~D~~~--------~~l~~~~~~~~~~~-~~-~~~~~~~~~~~~~~- 140 (244)
-+|||+|-|||+..+.... .. .. +++.+|..+ +.+.+..+.-.... .. ..++ ...+.++|.
T Consensus 98 ~~IlE~GFGTGLNfl~t~~~~~~~~~~~~L~~iS~Ek~pl~~~~~~~~~~~~l~~~l~~~~p~~~~~~v-~L~l~~GDa~ 176 (308)
T 3vyw_A 98 IRILDVGFGLGYNLAVALKHLWEVNPKLRVEIISFEKELLKEFPILPEPYREIHEFLLERVPEYEGERL-SLKVLLGDAR 176 (308)
T ss_dssp EEEEEECCTTSHHHHHHHHHHHHHCTTCEEEEEEEESSCCSCCCCCCTTSHHHHHHHHHHCSEEECSSE-EEEEEESCHH
T ss_pred cEEEEeCCCccHHHHHHHHHHHHhCCCcceEEEeecHHHHHhhHhchHhHHHHHHHHHHhCccccCCcE-EEEEEechHH
Confidence 4899999999987654432 12 23 456666422 11111111111110 00 0111 223444542
Q ss_pred --CCC-CCCCccEEEEcccccCCcChHHH--HHHHHHHHHhcCCCCceEeecccccCCCCCCCCCCCeEEEeeeeccCcc
Q 026036 141 --FPI-PNPDWDLILASDILLYVKQYSNL--IKSLSVLLKSYKPKDSQVGHLTKNEQGEGTEGLPWPAFLMSWRRRIGKE 215 (244)
Q Consensus 141 --~~~-~~~~fD~I~~~~~l~~~~~~~~l--~~~l~~~~~~lk~gG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 215 (244)
++. ...+||+|+. |.+ .+...+++ ...++.+++.++|||+++- +..
T Consensus 177 ~~l~~l~~~~~Da~fl-DgF-sP~kNPeLWs~e~f~~l~~~~~pgg~laT--------------------------Yta- 227 (308)
T 3vyw_A 177 KRIKEVENFKADAVFH-DAF-SPYKNPELWTLDFLSLIKERIDEKGYWVS--------------------------YSS- 227 (308)
T ss_dssp HHGGGCCSCCEEEEEE-CCS-CTTTSGGGGSHHHHHHHHTTEEEEEEEEE--------------------------SCC-
T ss_pred HHHhhhcccceeEEEe-CCC-CcccCcccCCHHHHHHHHHHhCCCcEEEE--------------------------EeC-
Confidence 222 2347999887 665 44444433 3889999999999996542 111
Q ss_pred chhhHHHHHhhcCCeEEEec
Q 026036 216 DETIFFTSCENAGLEVKHLG 235 (244)
Q Consensus 216 ~~~~~~~~l~~~Gf~v~~~~ 235 (244)
-..+...|.++||+|+++.
T Consensus 228 -ag~VRR~L~~aGF~V~k~~ 246 (308)
T 3vyw_A 228 -SLSVRKSLLTLGFKVGSSR 246 (308)
T ss_dssp -CHHHHHHHHHTTCEEEEEE
T ss_pred -cHHHHHHHHHCCCEEEecC
Confidence 2466788999999999874
|
| >3g7u_A Cytosine-specific methyltransferase; DNA-binding, NAD-binding, structural GENO protein structure initiative, PSI; 1.75A {Escherichia coli O157} | Back alignment and structure |
|---|
Probab=96.87 E-value=0.005 Score=52.16 Aligned_cols=94 Identities=17% Similarity=0.079 Sum_probs=57.7
Q ss_pred CeEEEeCCCCcHHHHHHHHhCCCeEEEEeCChHHHHHHHHHhHHhcCCCCCcceEeeecCCCCC-------CCCCCccEE
Q 026036 79 RRCIELGSGTGALAIFLRKAMNLDITTSDYNDQEIEDNIAYNSTTNGITPALPHIKHSWGDAFP-------IPNPDWDLI 151 (244)
Q Consensus 79 ~~VLdlG~G~G~~~~~~a~~~~~~v~~~D~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~fD~I 151 (244)
.+|+||.||+|.+++.+...+...|.++|+++.++ +..+.|... . ..+..+..+... .....+|+|
T Consensus 3 ~~vidLFsG~GGlslG~~~aG~~~v~avE~d~~a~-~t~~~N~~~--~----~~~~~DI~~~~~~~~~~~~~~~~~~D~i 75 (376)
T 3g7u_A 3 LNVIDLFSGVGGLSLGAARAGFDVKMAVEIDQHAI-NTHAINFPR--S----LHVQEDVSLLNAEIIKGFFKNDMPIDGI 75 (376)
T ss_dssp CEEEEETCTTSHHHHHHHHHTCEEEEEECSCHHHH-HHHHHHCTT--S----EEECCCGGGCCHHHHHHHHCSCCCCCEE
T ss_pred CeEEEEccCcCHHHHHHHHCCCcEEEEEeCCHHHH-HHHHHhCCC--C----ceEecChhhcCHHHHHhhcccCCCeeEE
Confidence 58999999999999999887655588999999876 666666421 1 112222211110 023579999
Q ss_pred EEcccccCCcC----------hHHHHHHHHHHHHhcCCC
Q 026036 152 LASDILLYVKQ----------YSNLIKSLSVLLKSYKPK 180 (244)
Q Consensus 152 ~~~~~l~~~~~----------~~~l~~~l~~~~~~lk~g 180 (244)
++..+. ...+ ...|...+-++.+.++|.
T Consensus 76 ~ggpPC-Q~fS~ag~~~~~d~r~~L~~~~~~~v~~~~P~ 113 (376)
T 3g7u_A 76 IGGPPC-QGFSSIGKGNPDDSRNQLYMHFYRLVSELQPL 113 (376)
T ss_dssp EECCCC-CTTC-------CHHHHHHHHHHHHHHHHHCCS
T ss_pred EecCCC-CCcccccCCCCCCchHHHHHHHHHHHHHhCCC
Confidence 997774 3221 123344444555666774
|
| >4dcm_A Ribosomal RNA large subunit methyltransferase G; 23S rRNA (guanine1835-N2)-methyltransferase; HET: SAM; 2.30A {Escherichia coli} | Back alignment and structure |
|---|
Probab=96.76 E-value=0.011 Score=49.94 Aligned_cols=116 Identities=18% Similarity=0.124 Sum_probs=77.2
Q ss_pred cceeechHHHHHHHHhhccCc-ccCCeEEEeCCCCcHHHHHHHHhCCCeEEEEeCChHHHHHHHHHhHHhcCCCCC-cce
Q 026036 55 ANFLWPGTFSFAEWLMHHREW-IERRRCIELGSGTGALAIFLRKAMNLDITTSDYNDQEIEDNIAYNSTTNGITPA-LPH 132 (244)
Q Consensus 55 ~~~~w~~~~~l~~~~~~~~~~-~~~~~VLdlG~G~G~~~~~~a~~~~~~v~~~D~~~~~l~~~~~~~~~~~~~~~~-~~~ 132 (244)
...-|+++- +|++++... ..+.+||.|+.+.|.++..++.. .++.+.-|--. ...++.|...|++... +..
T Consensus 18 ~l~a~da~d---~~ll~~~~~~~~~~~~~~~~d~~gal~~~~~~~---~~~~~~ds~~~-~~~~~~n~~~~~~~~~~~~~ 90 (375)
T 4dcm_A 18 PLQAWEAAD---EYLLQQLDDTEIRGPVLILNDAFGALSCALAEH---KPYSIGDSYIS-ELATRENLRLNGIDESSVKF 90 (375)
T ss_dssp SCCSCCHHH---HHHHHTTTTCCCCSCEEEECCSSSHHHHHTGGG---CCEEEESCHHH-HHHHHHHHHHTTCCGGGSEE
T ss_pred CCCccchHH---HHHHHhhhhccCCCCEEEECCCCCHHHHhhccC---CceEEEhHHHH-HHHHHHHHHHcCCCccceEe
Confidence 477888875 445544322 25568999999999998887643 33333224333 3567788888888432 221
Q ss_pred EeeecCCCCCCCCCCccEEEEcccccCCcChHHHHHHHHHHHHhcCCCCceEee
Q 026036 133 IKHSWGDAFPIPNPDWDLILASDILLYVKQYSNLIKSLSVLLKSYKPKDSQVGH 186 (244)
Q Consensus 133 ~~~~~~~~~~~~~~~fD~I~~~~~l~~~~~~~~l~~~l~~~~~~lk~gG~~~~~ 186 (244)
. +.+......||+|+. +.......+...+..+...+++|+++++.
T Consensus 91 ~-----~~~~~~~~~~~~v~~----~lpk~~~~l~~~L~~l~~~l~~~~~i~~~ 135 (375)
T 4dcm_A 91 L-----DSTADYPQQPGVVLI----KVPKTLALLEQQLRALRKVVTSDTRIIAG 135 (375)
T ss_dssp E-----ETTSCCCSSCSEEEE----ECCSCHHHHHHHHHHHHTTCCTTSEEEEE
T ss_pred c-----ccccccccCCCEEEE----EcCCCHHHHHHHHHHHHhhCCCCCEEEEE
Confidence 1 222233457999887 45577788889999999999999988665
|
| >3r24_A NSP16, 2'-O-methyl transferase; methyltransferase, zinc-finger, transferase, viral protein; HET: SAM; 2.00A {Sars coronavirus} | Back alignment and structure |
|---|
Probab=96.68 E-value=0.0035 Score=50.74 Aligned_cols=107 Identities=16% Similarity=0.146 Sum_probs=59.8
Q ss_pred HHHHHHhh-ccCcccCCeEEEeCCC----CcHHHHHHHHhCC--CeEEEEeCChHHHHHHHHHhHHhcCCCCCcceEeee
Q 026036 64 SFAEWLMH-HREWIERRRCIELGSG----TGALAIFLRKAMN--LDITTSDYNDQEIEDNIAYNSTTNGITPALPHIKHS 136 (244)
Q Consensus 64 ~l~~~~~~-~~~~~~~~~VLdlG~G----~G~~~~~~a~~~~--~~v~~~D~~~~~l~~~~~~~~~~~~~~~~~~~~~~~ 136 (244)
.|..|+-. ......|.+||||||| +.--+..+.+.+. ..|+++|+.+-.. ... ..+..|
T Consensus 95 qlcqyl~~~~~~vp~gmrVLDLGA~s~kg~APGS~VLr~~~p~g~~VVavDL~~~~s------------da~--~~IqGD 160 (344)
T 3r24_A 95 QLCQYLNTLTLAVPYNMRVIHFGAGSDKGVAPGTAVLRQWLPTGTLLVDSDLNDFVS------------DAD--STLIGD 160 (344)
T ss_dssp HHHHHHTTSCCCCCTTCEEEEESCCCTTSBCHHHHHHHHHSCTTCEEEEEESSCCBC------------SSS--EEEESC
T ss_pred HHHHHhccccEeecCCCEEEeCCCCCCCCCCCcHHHHHHhCCCCcEEEEeeCccccc------------CCC--eEEEcc
Confidence 56677743 3455678999999983 2222344444443 5899999987311 000 112222
Q ss_pred cCCCCCCCCCCccEEEEcccccCCc---------ChHHHHHHHHHHHHhcCCCCceEeec
Q 026036 137 WGDAFPIPNPDWDLILASDILLYVK---------QYSNLIKSLSVLLKSYKPKDSQVGHL 187 (244)
Q Consensus 137 ~~~~~~~~~~~fD~I~~~~~l~~~~---------~~~~l~~~l~~~~~~lk~gG~~~~~~ 187 (244)
... .....+||+|+| |+--... ...-...++.-+.+.|+|||.|++-+
T Consensus 161 ~~~--~~~~~k~DLVIS-DMAPNtTG~~D~d~~Rs~~L~ElALdfA~~~LkpGGsFvVKV 217 (344)
T 3r24_A 161 CAT--VHTANKWDLIIS-DMYDPRTKHVTKENDSKEGFFTYLCGFIKQKLALGGSIAVKI 217 (344)
T ss_dssp GGG--EEESSCEEEEEE-CCCCTTSCSSCSCCCCCCTHHHHHHHHHHHHEEEEEEEEEEE
T ss_pred ccc--cccCCCCCEEEe-cCCCCcCCccccchhHHHHHHHHHHHHHHHhCcCCCEEEEEE
Confidence 111 111367999998 3321110 11123355566677899999988764
|
| >2c7p_A Modification methylase HHAI; DNA methyltransferase, methyltransferase, base flipping, restriction system, transferase; HET: 5CM A1P SAH EPE CIT; 1.7A {Haemophilus haemolyticus} SCOP: c.66.1.26 PDB: 10mh_A* 1m0e_A* 1mht_A* 1hmy_A* 1skm_A* 2c7o_A* 2c7q_A* 2hmy_B* 2hr1_A* 3eeo_A* 3mht_A* 4mht_A* 5mht_A* 6mht_A* 7mht_A* 8mht_A* 9mht_A* 2zcj_A* 2z6u_A* 2z6q_A* ... | Back alignment and structure |
|---|
Probab=96.64 E-value=0.0045 Score=51.39 Aligned_cols=72 Identities=15% Similarity=0.138 Sum_probs=48.4
Q ss_pred cCCeEEEeCCCCcHHHHHHHHhCCCeEEEEeCChHHHHHHHHHhHHhcCCCCCcceEeeecCCCCCCCCCCccEEEEccc
Q 026036 77 ERRRCIELGSGTGALAIFLRKAMNLDITTSDYNDQEIEDNIAYNSTTNGITPALPHIKHSWGDAFPIPNPDWDLILASDI 156 (244)
Q Consensus 77 ~~~~VLdlG~G~G~~~~~~a~~~~~~v~~~D~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fD~I~~~~~ 156 (244)
.+.+|+||.||+|.+++.+...+...|.++|+++.++ +..+.|..... ..+..+........+|+|++..+
T Consensus 10 ~~~~~~dLFaG~Gg~~~g~~~aG~~~v~~~e~d~~a~-~t~~~N~~~~~--------~~Di~~~~~~~~~~~D~l~~gpP 80 (327)
T 2c7p_A 10 TGLRFIDLFAGLGGFRLALESCGAECVYSNEWDKYAQ-EVYEMNFGEKP--------EGDITQVNEKTIPDHDILCAGFP 80 (327)
T ss_dssp TTCEEEEETCTTTHHHHHHHHTTCEEEEEECCCHHHH-HHHHHHHSCCC--------BSCGGGSCGGGSCCCSEEEEECC
T ss_pred CCCcEEEECCCcCHHHHHHHHCCCeEEEEEeCCHHHH-HHHHHHcCCCC--------cCCHHHcCHhhCCCCCEEEECCC
Confidence 4679999999999999999877655699999999876 66776653211 11111111111235899999776
Q ss_pred c
Q 026036 157 L 157 (244)
Q Consensus 157 l 157 (244)
.
T Consensus 81 C 81 (327)
T 2c7p_A 81 C 81 (327)
T ss_dssp C
T ss_pred C
Confidence 5
|
| >3s2e_A Zinc-containing alcohol dehydrogenase superfamily; FURX, oxidoreductase; HET: NAD; 1.76A {Ralstonia eutropha} PDB: 3s1l_A* 3s2f_A* 3s2g_A* 3s2i_A* 1llu_A* 3meq_A* | Back alignment and structure |
|---|
Probab=96.61 E-value=0.0016 Score=54.18 Aligned_cols=100 Identities=14% Similarity=0.110 Sum_probs=64.6
Q ss_pred HHhhccCcccCCeEEEeCCC-CcHHHHHHHHhCCCeEEEEeCChHHHHHHHHHhHHhcCCCCCcceEeeecCCCC-----
Q 026036 68 WLMHHREWIERRRCIELGSG-TGALAIFLRKAMNLDITTSDYNDQEIEDNIAYNSTTNGITPALPHIKHSWGDAF----- 141 (244)
Q Consensus 68 ~~~~~~~~~~~~~VLdlG~G-~G~~~~~~a~~~~~~v~~~D~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~----- 141 (244)
..+......+|.+||-.|+| .|..++.+++..+.+|+++|.+++.+ +.+++ .+.. ..++..+..
T Consensus 157 ~~l~~~~~~~g~~VlV~GaG~vG~~a~qla~~~Ga~Vi~~~~~~~~~-~~~~~----lGa~-----~~i~~~~~~~~~~~ 226 (340)
T 3s2e_A 157 KGLKVTDTRPGQWVVISGIGGLGHVAVQYARAMGLRVAAVDIDDAKL-NLARR----LGAE-----VAVNARDTDPAAWL 226 (340)
T ss_dssp HHHHTTTCCTTSEEEEECCSTTHHHHHHHHHHTTCEEEEEESCHHHH-HHHHH----TTCS-----EEEETTTSCHHHHH
T ss_pred HHHHHcCCCCCCEEEEECCCHHHHHHHHHHHHCCCeEEEEeCCHHHH-HHHHH----cCCC-----EEEeCCCcCHHHHH
Confidence 33444566789999999986 48888888888888999999998765 54433 2221 112221110
Q ss_pred CCCCCCccEEEEcccccCCcChHHHHHHHHHHHHhcCCCCceEee
Q 026036 142 PIPNPDWDLILASDILLYVKQYSNLIKSLSVLLKSYKPKDSQVGH 186 (244)
Q Consensus 142 ~~~~~~fD~I~~~~~l~~~~~~~~l~~~l~~~~~~lk~gG~~~~~ 186 (244)
....+.+|+|+-.-. .. ..++...+.++++|++++.
T Consensus 227 ~~~~g~~d~vid~~g------~~---~~~~~~~~~l~~~G~iv~~ 262 (340)
T 3s2e_A 227 QKEIGGAHGVLVTAV------SP---KAFSQAIGMVRRGGTIALN 262 (340)
T ss_dssp HHHHSSEEEEEESSC------CH---HHHHHHHHHEEEEEEEEEC
T ss_pred HHhCCCCCEEEEeCC------CH---HHHHHHHHHhccCCEEEEe
Confidence 001136888875321 12 5677788999999998776
|
| >1i4w_A Mitochondrial replication protein MTF1; mitochondrial transcription factor, transcription initiation; 2.60A {Saccharomyces cerevisiae} SCOP: c.66.1.24 | Back alignment and structure |
|---|
Probab=96.52 E-value=0.0094 Score=49.94 Aligned_cols=44 Identities=9% Similarity=0.092 Sum_probs=36.2
Q ss_pred cCCeEEEeCCCCcHHHHHHHHhC-CCeEEEEeCChHHHHHHHHHhH
Q 026036 77 ERRRCIELGSGTGALAIFLRKAM-NLDITTSDYNDQEIEDNIAYNS 121 (244)
Q Consensus 77 ~~~~VLdlG~G~G~~~~~~a~~~-~~~v~~~D~~~~~l~~~~~~~~ 121 (244)
++..|||||.|.|.++..++... +.+|+++++++..+ ..++...
T Consensus 58 ~~~~VlEIGPG~G~LT~~Ll~~~~~~~vvavE~D~~l~-~~L~~~~ 102 (353)
T 1i4w_A 58 EELKVLDLYPGVGIQSAIFYNKYCPRQYSLLEKRSSLY-KFLNAKF 102 (353)
T ss_dssp TTCEEEEESCTTCHHHHHHHHHHCCSEEEEECCCHHHH-HHHHHHT
T ss_pred CCCEEEEECCCCCHHHHHHHhhCCCCEEEEEecCHHHH-HHHHHhc
Confidence 35799999999999999998754 57899999999865 6666544
|
| >4ej6_A Putative zinc-binding dehydrogenase; structural genomics, nysgrc, PSI-biology, NEW YORK structura genomics research consortium; 1.89A {Sinorhizobium meliloti} PDB: 4ejm_A* | Back alignment and structure |
|---|
Probab=96.34 E-value=0.0085 Score=50.51 Aligned_cols=102 Identities=12% Similarity=0.051 Sum_probs=61.5
Q ss_pred hccCcccCCeEEEeCCCC-cHHHHHHHHhCCC-eEEEEeCChHHHHHHHHHhHHhcCCCCCcceEeeecC----CCCCCC
Q 026036 71 HHREWIERRRCIELGSGT-GALAIFLRKAMNL-DITTSDYNDQEIEDNIAYNSTTNGITPALPHIKHSWG----DAFPIP 144 (244)
Q Consensus 71 ~~~~~~~~~~VLdlG~G~-G~~~~~~a~~~~~-~v~~~D~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~ 144 (244)
......+|.+||=+|+|. |..++.+|+..+. +|+++|.+++.. +.+++. +....+.....++. +.....
T Consensus 176 ~~~~~~~g~~VlV~GaG~vG~~aiqlak~~Ga~~Vi~~~~~~~~~-~~a~~l----Ga~~vi~~~~~~~~~~i~~~~~~~ 250 (370)
T 4ej6_A 176 DLSGIKAGSTVAILGGGVIGLLTVQLARLAGATTVILSTRQATKR-RLAEEV----GATATVDPSAGDVVEAIAGPVGLV 250 (370)
T ss_dssp HHHTCCTTCEEEEECCSHHHHHHHHHHHHTTCSEEEEECSCHHHH-HHHHHH----TCSEEECTTSSCHHHHHHSTTSSS
T ss_pred HhcCCCCCCEEEEECCCHHHHHHHHHHHHcCCCEEEEECCCHHHH-HHHHHc----CCCEEECCCCcCHHHHHHhhhhcc
Confidence 445567899999999863 6667777777777 899999998765 444432 22100000000000 000022
Q ss_pred CCCccEEEEcccccCCcChHHHHHHHHHHHHhcCCCCceEee
Q 026036 145 NPDWDLILASDILLYVKQYSNLIKSLSVLLKSYKPKDSQVGH 186 (244)
Q Consensus 145 ~~~fD~I~~~~~l~~~~~~~~l~~~l~~~~~~lk~gG~~~~~ 186 (244)
.+.+|+|+-. . ..+ .+++...+.+++||++++.
T Consensus 251 ~gg~Dvvid~--~----G~~---~~~~~~~~~l~~~G~vv~~ 283 (370)
T 4ej6_A 251 PGGVDVVIEC--A----GVA---ETVKQSTRLAKAGGTVVIL 283 (370)
T ss_dssp TTCEEEEEEC--S----CCH---HHHHHHHHHEEEEEEEEEC
T ss_pred CCCCCEEEEC--C----CCH---HHHHHHHHHhccCCEEEEE
Confidence 2379998853 2 112 5677788999999998776
|
| >3qv2_A 5-cytosine DNA methyltransferase; DNMT2, ehmeth; HET: SAH; 2.15A {Entamoeba histolytica} | Back alignment and structure |
|---|
Probab=96.30 E-value=0.06 Score=44.56 Aligned_cols=72 Identities=15% Similarity=0.022 Sum_probs=45.8
Q ss_pred CCeEEEeCCCCcHHHHHHHHhCC--CeE-EEEeCChHHHHHHHHHhHHhcCCCCCcceEeeecCCCCC--CCCCCccEEE
Q 026036 78 RRRCIELGSGTGALAIFLRKAMN--LDI-TTSDYNDQEIEDNIAYNSTTNGITPALPHIKHSWGDAFP--IPNPDWDLIL 152 (244)
Q Consensus 78 ~~~VLdlG~G~G~~~~~~a~~~~--~~v-~~~D~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~fD~I~ 152 (244)
..+++||.||.|.+++.+...+- ..| .++|+++.+. +..+.|-.... +..+..+... .....+|+++
T Consensus 10 ~~~vidLFaG~GG~~~G~~~aG~~~~~v~~a~e~d~~a~-~ty~~N~~~~~-------~~~DI~~~~~~~i~~~~~Dil~ 81 (327)
T 3qv2_A 10 QVNVIEFFSGIGGLRSSYERSSININATFIPFDINEIAN-KIYSKNFKEEV-------QVKNLDSISIKQIESLNCNTWF 81 (327)
T ss_dssp CEEEEEETCTTTHHHHHHHHSSCCCCEEEEEECCCHHHH-HHHHHHHCCCC-------BCCCTTTCCHHHHHHTCCCEEE
T ss_pred CCEEEEECCChhHHHHHHHHcCCCceEEEEEEECCHHHH-HHHHHHCCCCc-------ccCChhhcCHHHhccCCCCEEE
Confidence 35899999999999999877652 346 6999999876 66666643211 1111111100 1112589999
Q ss_pred Ecccc
Q 026036 153 ASDIL 157 (244)
Q Consensus 153 ~~~~l 157 (244)
+..+.
T Consensus 82 ggpPC 86 (327)
T 3qv2_A 82 MSPPC 86 (327)
T ss_dssp ECCCC
T ss_pred ecCCc
Confidence 87775
|
| >3ubt_Y Modification methylase HAEIII; protein-DNA complex, DNA cytosine-5 methyltransferase, DNA B S-adenosyl methionine binding; HET: ATP 2PE; 2.50A {Haemophilus aegyptius} PDB: 1dct_A* | Back alignment and structure |
|---|
Probab=96.28 E-value=0.041 Score=45.38 Aligned_cols=128 Identities=21% Similarity=0.158 Sum_probs=71.6
Q ss_pred CeEEEeCCCCcHHHHHHHHhCCCeEEEEeCChHHHHHHHHHhHHhcCCCCCcceEeeecCCCCCCCCCCccEEEEccccc
Q 026036 79 RRCIELGSGTGALAIFLRKAMNLDITTSDYNDQEIEDNIAYNSTTNGITPALPHIKHSWGDAFPIPNPDWDLILASDILL 158 (244)
Q Consensus 79 ~~VLdlG~G~G~~~~~~a~~~~~~v~~~D~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fD~I~~~~~l~ 158 (244)
.+||||-||.|.+++.+.+.+-.-|.++|+++.+. +..+.|-.. ..+..|..+......+..|++++..+.
T Consensus 1 mkvidLFsG~GG~~~G~~~aG~~~v~a~e~d~~a~-~ty~~N~~~-------~~~~~DI~~i~~~~~~~~D~l~ggpPC- 71 (331)
T 3ubt_Y 1 MNLISLFSGAGGLDLGFQKAGFRIICANEYDKSIW-KTYESNHSA-------KLIKGDISKISSDEFPKCDGIIGGPPS- 71 (331)
T ss_dssp CEEEEESCTTCHHHHHHHHTTCEEEEEEECCTTTH-HHHHHHCCS-------EEEESCGGGCCGGGSCCCSEEECCCCG-
T ss_pred CeEEEeCcCccHHHHHHHHCCCEEEEEEeCCHHHH-HHHHHHCCC-------CcccCChhhCCHhhCCcccEEEecCCC-
Confidence 37999999999999988776544588999999876 566655321 112222222111122468998886654
Q ss_pred CC-----------cChHHHHHHHHHHHHhcCCCCceEeecccccCCCCCCCCCCCeEEEeeeeccCccchhhHHHHHhhc
Q 026036 159 YV-----------KQYSNLIKSLSVLLKSYKPKDSQVGHLTKNEQGEGTEGLPWPAFLMSWRRRIGKEDETIFFTSCENA 227 (244)
Q Consensus 159 ~~-----------~~~~~l~~~l~~~~~~lk~gG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 227 (244)
.. .....|...+-++.+.++|. +++. +|...+. ..+.. .....+.+.+++.
T Consensus 72 Q~fS~ag~~~g~~d~R~~L~~~~~r~i~~~~Pk--~~~~-----ENV~gl~----------~~~~~-~~~~~i~~~l~~~ 133 (331)
T 3ubt_Y 72 QSWSEGGSLRGIDDPRGKLFYEYIRILKQKKPI--FFLA-----ENVKGMM----------AQRHN-KAVQEFIQEFDNA 133 (331)
T ss_dssp GGTEETTEECCTTCGGGHHHHHHHHHHHHHCCS--EEEE-----EECCGGG----------GCTTS-HHHHHHHHHHHHH
T ss_pred CCcCCCCCccCCCCchhHHHHHHHHHHhccCCe--EEEe-----eeecccc----------ccccc-chhhhhhhhhccC
Confidence 21 11123445555566677885 2333 1111110 00111 1235667788889
Q ss_pred CCeEEE
Q 026036 228 GLEVKH 233 (244)
Q Consensus 228 Gf~v~~ 233 (244)
|+.+..
T Consensus 134 GY~v~~ 139 (331)
T 3ubt_Y 134 GYDVHI 139 (331)
T ss_dssp TEEEEE
T ss_pred CcEEEE
Confidence 987764
|
| >2py6_A Methyltransferase FKBM; YP_546752.1, structural genomics, JO center for structural genomics, JCSG, protein structure INI PSI-2; 2.15A {Methylobacillus flagellatus KT} SCOP: c.66.1.56 | Back alignment and structure |
|---|
Probab=96.26 E-value=0.013 Score=50.16 Aligned_cols=47 Identities=6% Similarity=0.051 Sum_probs=40.1
Q ss_pred ccCCeEEEeCCCCcHHHHHHH-HhCC--CeEEEEeCChHHHHHHHHHhHHh
Q 026036 76 IERRRCIELGSGTGALAIFLR-KAMN--LDITTSDYNDQEIEDNIAYNSTT 123 (244)
Q Consensus 76 ~~~~~VLdlG~G~G~~~~~~a-~~~~--~~v~~~D~~~~~l~~~~~~~~~~ 123 (244)
.++..|+|+||+.|..++.++ +..+ .+|+++|.++... +.+++|...
T Consensus 225 ~~~~~viDvGAn~G~~s~~~a~~~~~~~~~V~afEP~p~~~-~~L~~n~~~ 274 (409)
T 2py6_A 225 SDSEKMVDCGASIGESLAGLIGVTKGKFERVWMIEPDRINL-QTLQNVLRR 274 (409)
T ss_dssp CSSCEEEEETCTTSHHHHHHHHHHTSCCSEEEEECCCHHHH-HHHHHHHHH
T ss_pred CCCCEEEECCCCcCHHHHHHHHHhcCCCCEEEEEcCCHHHH-HHHHHHHHh
Confidence 578899999999999999887 4443 7899999999876 788888877
|
| >3two_A Mannitol dehydrogenase; cinnamyl-alcohol dehydrogenase, NADP(H) oxidoreductase; HET: NDP; 2.18A {Helicobacter pylori} | Back alignment and structure |
|---|
Probab=96.14 E-value=0.013 Score=48.78 Aligned_cols=95 Identities=16% Similarity=0.169 Sum_probs=60.6
Q ss_pred hhccCcccCCeEEEeCCCC-cHHHHHHHHhCCCeEEEEeCChHHHHHHHHHhHHhcCCCCCcceEeeecCCCCCCCCCCc
Q 026036 70 MHHREWIERRRCIELGSGT-GALAIFLRKAMNLDITTSDYNDQEIEDNIAYNSTTNGITPALPHIKHSWGDAFPIPNPDW 148 (244)
Q Consensus 70 ~~~~~~~~~~~VLdlG~G~-G~~~~~~a~~~~~~v~~~D~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f 148 (244)
.......+|.+||=+|+|. |..++.+++..+.+|+++|.+++.+ +.+++ .+.. .+. .+.... ...+
T Consensus 169 l~~~~~~~g~~VlV~GaG~vG~~a~qla~~~Ga~Vi~~~~~~~~~-~~~~~----lGa~----~v~---~~~~~~-~~~~ 235 (348)
T 3two_A 169 LKFSKVTKGTKVGVAGFGGLGSMAVKYAVAMGAEVSVFARNEHKK-QDALS----MGVK----HFY---TDPKQC-KEEL 235 (348)
T ss_dssp HHHTTCCTTCEEEEESCSHHHHHHHHHHHHTTCEEEEECSSSTTH-HHHHH----TTCS----EEE---SSGGGC-CSCE
T ss_pred HHhcCCCCCCEEEEECCcHHHHHHHHHHHHCCCeEEEEeCCHHHH-HHHHh----cCCC----eec---CCHHHH-hcCC
Confidence 3344667899999999863 6777777877788999999988765 44433 2221 111 111111 1279
Q ss_pred cEEEEcccccCCcChHHHHHHHHHHHHhcCCCCceEee
Q 026036 149 DLILASDILLYVKQYSNLIKSLSVLLKSYKPKDSQVGH 186 (244)
Q Consensus 149 D~I~~~~~l~~~~~~~~l~~~l~~~~~~lk~gG~~~~~ 186 (244)
|+|+-.-.- + ..++...+.++++|++++.
T Consensus 236 D~vid~~g~------~---~~~~~~~~~l~~~G~iv~~ 264 (348)
T 3two_A 236 DFIISTIPT------H---YDLKDYLKLLTYNGDLALV 264 (348)
T ss_dssp EEEEECCCS------C---CCHHHHHTTEEEEEEEEEC
T ss_pred CEEEECCCc------H---HHHHHHHHHHhcCCEEEEE
Confidence 998853221 1 2455678899999998876
|
| >1f8f_A Benzyl alcohol dehydrogenase; rossmann fold, oxidoreductase; HET: NAD; 2.20A {Acinetobacter calcoaceticus} SCOP: b.35.1.2 c.2.1.1 | Back alignment and structure |
|---|
Probab=96.09 E-value=0.0065 Score=51.16 Aligned_cols=97 Identities=13% Similarity=0.055 Sum_probs=61.1
Q ss_pred hccCcccCCeEEEeCCCC-cHHHHHHHHhCCC-eEEEEeCChHHHHHHHHHhHHhcCCCCCcceEeeecCCC-----C-C
Q 026036 71 HHREWIERRRCIELGSGT-GALAIFLRKAMNL-DITTSDYNDQEIEDNIAYNSTTNGITPALPHIKHSWGDA-----F-P 142 (244)
Q Consensus 71 ~~~~~~~~~~VLdlG~G~-G~~~~~~a~~~~~-~v~~~D~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~-~ 142 (244)
......+|.+||-+|||. |..++.+++..+. +|+++|.+++.+ +.+++. +.. ..++..+. + .
T Consensus 184 ~~~~~~~g~~VlV~GaG~vG~~a~qlak~~Ga~~Vi~~~~~~~~~-~~a~~l----Ga~-----~vi~~~~~~~~~~~~~ 253 (371)
T 1f8f_A 184 NALKVTPASSFVTWGAGAVGLSALLAAKVCGASIIIAVDIVESRL-ELAKQL----GAT-----HVINSKTQDPVAAIKE 253 (371)
T ss_dssp TTTCCCTTCEEEEESCSHHHHHHHHHHHHHTCSEEEEEESCHHHH-HHHHHH----TCS-----EEEETTTSCHHHHHHH
T ss_pred hccCCCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEECCCHHHH-HHHHHc----CCC-----EEecCCccCHHHHHHH
Confidence 345567899999999874 7777777776676 799999998765 554432 221 01111111 0 0
Q ss_pred CCCCCccEEEEcccccCCcChHHHHHHHHHHHHhcCCCCceEee
Q 026036 143 IPNPDWDLILASDILLYVKQYSNLIKSLSVLLKSYKPKDSQVGH 186 (244)
Q Consensus 143 ~~~~~fD~I~~~~~l~~~~~~~~l~~~l~~~~~~lk~gG~~~~~ 186 (244)
...+.+|+|+-.-. .+ ..++...+.++++|++++.
T Consensus 254 ~~~gg~D~vid~~g------~~---~~~~~~~~~l~~~G~iv~~ 288 (371)
T 1f8f_A 254 ITDGGVNFALESTG------SP---EILKQGVDALGILGKIAVV 288 (371)
T ss_dssp HTTSCEEEEEECSC------CH---HHHHHHHHTEEEEEEEEEC
T ss_pred hcCCCCcEEEECCC------CH---HHHHHHHHHHhcCCEEEEe
Confidence 11226999875321 12 5667788999999998775
|
| >1pl8_A Human sorbitol dehydrogenase; NAD, oxidoreductase; HET: NAD; 1.90A {Homo sapiens} SCOP: b.35.1.2 c.2.1.1 PDB: 1pl7_A 1pl6_A* 3qe3_A | Back alignment and structure |
|---|
Probab=96.06 E-value=0.051 Score=45.35 Aligned_cols=96 Identities=10% Similarity=0.090 Sum_probs=60.1
Q ss_pred ccCcccCCeEEEeCCCC-cHHHHHHHHhCCC-eEEEEeCChHHHHHHHHHhHHhcCCCCCcceEeeecC--------CCC
Q 026036 72 HREWIERRRCIELGSGT-GALAIFLRKAMNL-DITTSDYNDQEIEDNIAYNSTTNGITPALPHIKHSWG--------DAF 141 (244)
Q Consensus 72 ~~~~~~~~~VLdlG~G~-G~~~~~~a~~~~~-~v~~~D~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~--------~~~ 141 (244)
.....+|.+||-+|+|. |..++.+++..+. +|+++|.+++.+ +.+++ .+.. .. ++.. +.+
T Consensus 166 ~~~~~~g~~VlV~GaG~vG~~aiqlak~~Ga~~Vi~~~~~~~~~-~~a~~----lGa~---~v--i~~~~~~~~~~~~~i 235 (356)
T 1pl8_A 166 RGGVTLGHKVLVCGAGPIGMVTLLVAKAMGAAQVVVTDLSATRL-SKAKE----IGAD---LV--LQISKESPQEIARKV 235 (356)
T ss_dssp HHTCCTTCEEEEECCSHHHHHHHHHHHHTTCSEEEEEESCHHHH-HHHHH----TTCS---EE--EECSSCCHHHHHHHH
T ss_pred hcCCCCCCEEEEECCCHHHHHHHHHHHHcCCCEEEEECCCHHHH-HHHHH----hCCC---EE--EcCcccccchHHHHH
Confidence 34566899999999863 7777777777777 899999998754 44432 2221 01 1111 000
Q ss_pred -CCCCCCccEEEEcccccCCcChHHHHHHHHHHHHhcCCCCceEee
Q 026036 142 -PIPNPDWDLILASDILLYVKQYSNLIKSLSVLLKSYKPKDSQVGH 186 (244)
Q Consensus 142 -~~~~~~fD~I~~~~~l~~~~~~~~l~~~l~~~~~~lk~gG~~~~~ 186 (244)
......+|+|+-.-. .+ ..++...+.++++|++++.
T Consensus 236 ~~~~~~g~D~vid~~g------~~---~~~~~~~~~l~~~G~iv~~ 272 (356)
T 1pl8_A 236 EGQLGCKPEVTIECTG------AE---ASIQAGIYATRSGGTLVLV 272 (356)
T ss_dssp HHHHTSCCSEEEECSC------CH---HHHHHHHHHSCTTCEEEEC
T ss_pred HHHhCCCCCEEEECCC------Ch---HHHHHHHHHhcCCCEEEEE
Confidence 000146899885321 12 4566788999999998765
|
| >1kol_A Formaldehyde dehydrogenase; oxidoreductase; HET: NAD; 1.65A {Pseudomonas putida} SCOP: b.35.1.2 c.2.1.1 | Back alignment and structure |
|---|
Probab=95.97 E-value=0.059 Score=45.67 Aligned_cols=100 Identities=12% Similarity=0.065 Sum_probs=61.4
Q ss_pred cCcccCCeEEEeCCCC-cHHHHHHHHhCCC-eEEEEeCChHHHHHHHHHhHHhcCCCCCcceEeeecCCCCC--------
Q 026036 73 REWIERRRCIELGSGT-GALAIFLRKAMNL-DITTSDYNDQEIEDNIAYNSTTNGITPALPHIKHSWGDAFP-------- 142 (244)
Q Consensus 73 ~~~~~~~~VLdlG~G~-G~~~~~~a~~~~~-~v~~~D~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------- 142 (244)
....+|.+||-+|||. |..++.+|+..++ +|+++|.+++.+ +.+++ .+. .. ++..+...
T Consensus 181 ~~~~~g~~VlV~GaG~vG~~aiqlAk~~Ga~~Vi~~~~~~~~~-~~a~~----lGa----~~--i~~~~~~~~~~~v~~~ 249 (398)
T 1kol_A 181 AGVGPGSTVYVAGAGPVGLAAAASARLLGAAVVIVGDLNPARL-AHAKA----QGF----EI--ADLSLDTPLHEQIAAL 249 (398)
T ss_dssp TTCCTTCEEEEECCSHHHHHHHHHHHHTTCSEEEEEESCHHHH-HHHHH----TTC----EE--EETTSSSCHHHHHHHH
T ss_pred cCCCCCCEEEEECCcHHHHHHHHHHHHCCCCeEEEEcCCHHHH-HHHHH----cCC----cE--EccCCcchHHHHHHHH
Confidence 4566889999999863 7777778877776 799999998765 54433 122 11 12211100
Q ss_pred CCCCCccEEEEccccc---------CCcChHHHHHHHHHHHHhcCCCCceEee
Q 026036 143 IPNPDWDLILASDILL---------YVKQYSNLIKSLSVLLKSYKPKDSQVGH 186 (244)
Q Consensus 143 ~~~~~fD~I~~~~~l~---------~~~~~~~l~~~l~~~~~~lk~gG~~~~~ 186 (244)
.....+|+|+-.-.-- ++...+ .+++...+.+++||++++.
T Consensus 250 t~g~g~Dvvid~~G~~~~~~~~~~~~~~~~~---~~~~~~~~~l~~~G~iv~~ 299 (398)
T 1kol_A 250 LGEPEVDCAVDAVGFEARGHGHEGAKHEAPA---TVLNSLMQVTRVAGKIGIP 299 (398)
T ss_dssp HSSSCEEEEEECCCTTCBCSSTTGGGSBCTT---HHHHHHHHHEEEEEEEEEC
T ss_pred hCCCCCCEEEECCCCcccccccccccccchH---HHHHHHHHHHhcCCEEEEe
Confidence 0123699988643210 111111 4677788999999998765
|
| >1pqw_A Polyketide synthase; rossmann fold, dimer, structural genomics, PSI, protein STRU initiative; 2.66A {Mycobacterium tuberculosis} SCOP: c.2.1.1 | Back alignment and structure |
|---|
Probab=95.92 E-value=0.046 Score=41.41 Aligned_cols=94 Identities=14% Similarity=0.115 Sum_probs=56.8
Q ss_pred cCcccCCeEEEeCC--CCcHHHHHHHHhCCCeEEEEeCChHHHHHHHHHhHHhcCCCCCcceEeeecCCCC------C-C
Q 026036 73 REWIERRRCIELGS--GTGALAIFLRKAMNLDITTSDYNDQEIEDNIAYNSTTNGITPALPHIKHSWGDAF------P-I 143 (244)
Q Consensus 73 ~~~~~~~~VLdlG~--G~G~~~~~~a~~~~~~v~~~D~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~-~ 143 (244)
....+|++||-.|+ |.|.....+++..+.+|+++|.+++.+ +.++. .+. . ...+..+.. . .
T Consensus 34 ~~~~~g~~vlV~Ga~ggiG~~~~~~~~~~G~~V~~~~~~~~~~-~~~~~----~g~----~-~~~d~~~~~~~~~~~~~~ 103 (198)
T 1pqw_A 34 GRLSPGERVLIHSATGGVGMAAVSIAKMIGARIYTTAGSDAKR-EMLSR----LGV----E-YVGDSRSVDFADEILELT 103 (198)
T ss_dssp SCCCTTCEEEETTTTSHHHHHHHHHHHHHTCEEEEEESSHHHH-HHHHT----TCC----S-EEEETTCSTHHHHHHHHT
T ss_pred hCCCCCCEEEEeeCCChHHHHHHHHHHHcCCEEEEEeCCHHHH-HHHHH----cCC----C-EEeeCCcHHHHHHHHHHh
Confidence 45668899999995 345555445544478999999988754 33322 122 1 112222210 0 1
Q ss_pred CCCCccEEEEcccccCCcChHHHHHHHHHHHHhcCCCCceEee
Q 026036 144 PNPDWDLILASDILLYVKQYSNLIKSLSVLLKSYKPKDSQVGH 186 (244)
Q Consensus 144 ~~~~fD~I~~~~~l~~~~~~~~l~~~l~~~~~~lk~gG~~~~~ 186 (244)
....+|+|+.+-. . ..++...+.++++|++++.
T Consensus 104 ~~~~~D~vi~~~g-------~---~~~~~~~~~l~~~G~~v~~ 136 (198)
T 1pqw_A 104 DGYGVDVVLNSLA-------G---EAIQRGVQILAPGGRFIEL 136 (198)
T ss_dssp TTCCEEEEEECCC-------T---HHHHHHHHTEEEEEEEEEC
T ss_pred CCCCCeEEEECCc-------h---HHHHHHHHHhccCCEEEEE
Confidence 1236999986421 1 4567788999999988776
|
| >1uuf_A YAHK, zinc-type alcohol dehydrogenase-like protein YAHK; oxidoreductase, zinc binding, oxydoreductase, metal-binding; 1.76A {Escherichia coli} SCOP: b.35.1.2 c.2.1.1 | Back alignment and structure |
|---|
Probab=95.91 E-value=0.0067 Score=51.17 Aligned_cols=95 Identities=15% Similarity=0.121 Sum_probs=58.9
Q ss_pred cCcccCCeEEEeCCC-CcHHHHHHHHhCCCeEEEEeCChHHHHHHHHHhHHhcCCCCCcceEeeecCCC--CCCCCCCcc
Q 026036 73 REWIERRRCIELGSG-TGALAIFLRKAMNLDITTSDYNDQEIEDNIAYNSTTNGITPALPHIKHSWGDA--FPIPNPDWD 149 (244)
Q Consensus 73 ~~~~~~~~VLdlG~G-~G~~~~~~a~~~~~~v~~~D~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~fD 149 (244)
....+|.+||-+|+| .|..++.+|+..+.+|+++|.+++.+ +.+++ . +.. . .++..+. .......+|
T Consensus 190 ~~~~~g~~VlV~GaG~vG~~aiqlak~~Ga~Vi~~~~~~~~~-~~a~~-l---Ga~----~-vi~~~~~~~~~~~~~g~D 259 (369)
T 1uuf_A 190 WQAGPGKKVGVVGIGGLGHMGIKLAHAMGAHVVAFTTSEAKR-EAAKA-L---GAD----E-VVNSRNADEMAAHLKSFD 259 (369)
T ss_dssp TTCCTTCEEEEECCSHHHHHHHHHHHHTTCEEEEEESSGGGH-HHHHH-H---TCS----E-EEETTCHHHHHTTTTCEE
T ss_pred cCCCCCCEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCHHHH-HHHHH-c---CCc----E-EeccccHHHHHHhhcCCC
Confidence 356689999999987 36777777777788999999988765 44443 1 221 0 1111110 000114699
Q ss_pred EEEEcccccCCcChHHHHHHHHHHHHhcCCCCceEee
Q 026036 150 LILASDILLYVKQYSNLIKSLSVLLKSYKPKDSQVGH 186 (244)
Q Consensus 150 ~I~~~~~l~~~~~~~~l~~~l~~~~~~lk~gG~~~~~ 186 (244)
+|+-.-.- + ..++...+.++++|+++..
T Consensus 260 vvid~~g~------~---~~~~~~~~~l~~~G~iv~~ 287 (369)
T 1uuf_A 260 FILNTVAA------P---HNLDDFTTLLKRDGTMTLV 287 (369)
T ss_dssp EEEECCSS------C---CCHHHHHTTEEEEEEEEEC
T ss_pred EEEECCCC------H---HHHHHHHHHhccCCEEEEe
Confidence 98853221 1 2345577899999988765
|
| >3m6i_A L-arabinitol 4-dehydrogenase; medium chain dehydrogenase/reductase, oxidoreductase; HET: NAD; 2.60A {Neurospora crassa} | Back alignment and structure |
|---|
Probab=95.78 E-value=0.04 Score=46.12 Aligned_cols=100 Identities=10% Similarity=0.035 Sum_probs=61.8
Q ss_pred hccCcccCCeEEEeCCC-CcHHHHHHHHhCCCe-EEEEeCChHHHHHHHHHhHHhcCCCCCcceEeee------cCCCC-
Q 026036 71 HHREWIERRRCIELGSG-TGALAIFLRKAMNLD-ITTSDYNDQEIEDNIAYNSTTNGITPALPHIKHS------WGDAF- 141 (244)
Q Consensus 71 ~~~~~~~~~~VLdlG~G-~G~~~~~~a~~~~~~-v~~~D~~~~~l~~~~~~~~~~~~~~~~~~~~~~~------~~~~~- 141 (244)
......+|.+||=+|+| .|..++.+|+..+.+ |+++|.+++.+ +.+++. ....+ ....+ +.+..
T Consensus 173 ~~~~~~~g~~VlV~GaG~vG~~aiqlak~~Ga~~Vi~~~~~~~~~-~~a~~l-~~~~~-----~~~~~~~~~~~~~~~v~ 245 (363)
T 3m6i_A 173 QRAGVRLGDPVLICGAGPIGLITMLCAKAAGACPLVITDIDEGRL-KFAKEI-CPEVV-----THKVERLSAEESAKKIV 245 (363)
T ss_dssp HHHTCCTTCCEEEECCSHHHHHHHHHHHHTTCCSEEEEESCHHHH-HHHHHH-CTTCE-----EEECCSCCHHHHHHHHH
T ss_pred HHcCCCCCCEEEEECCCHHHHHHHHHHHHcCCCEEEEECCCHHHH-HHHHHh-chhcc-----cccccccchHHHHHHHH
Confidence 34456789999999986 367777777777776 99999998765 555543 21111 11110 00000
Q ss_pred C-CCCCCccEEEEcccccCCcChHHHHHHHHHHHHhcCCCCceEee
Q 026036 142 P-IPNPDWDLILASDILLYVKQYSNLIKSLSVLLKSYKPKDSQVGH 186 (244)
Q Consensus 142 ~-~~~~~fD~I~~~~~l~~~~~~~~l~~~l~~~~~~lk~gG~~~~~ 186 (244)
. .....+|+|+-. . . .+ .++....+.+++||++++.
T Consensus 246 ~~t~g~g~Dvvid~--~---g-~~---~~~~~~~~~l~~~G~iv~~ 282 (363)
T 3m6i_A 246 ESFGGIEPAVALEC--T---G-VE---SSIAAAIWAVKFGGKVFVI 282 (363)
T ss_dssp HHTSSCCCSEEEEC--S---C-CH---HHHHHHHHHSCTTCEEEEC
T ss_pred HHhCCCCCCEEEEC--C---C-Ch---HHHHHHHHHhcCCCEEEEE
Confidence 0 112469998853 2 1 12 4667788999999998776
|
| >1e3j_A NADP(H)-dependent ketose reductase; oxidoreductase, fructose reduction; 2.3A {Bemisia argentifolii} SCOP: b.35.1.2 c.2.1.1 | Back alignment and structure |
|---|
Probab=95.74 E-value=0.09 Score=43.75 Aligned_cols=96 Identities=8% Similarity=0.055 Sum_probs=60.4
Q ss_pred ccCcccCCeEEEeCCC-CcHHHHHHHHhCCCeEEEEeCChHHHHHHHHHhHHhcCCCCCcceEeeecCCCCCC-------
Q 026036 72 HREWIERRRCIELGSG-TGALAIFLRKAMNLDITTSDYNDQEIEDNIAYNSTTNGITPALPHIKHSWGDAFPI------- 143 (244)
Q Consensus 72 ~~~~~~~~~VLdlG~G-~G~~~~~~a~~~~~~v~~~D~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------- 143 (244)
.....+|.+||-+|+| .|..++.+++..+.+|+++|.+++.+ +.++. .+.. ..++..+....
T Consensus 163 ~~~~~~g~~VlV~GaG~vG~~a~qla~~~Ga~Vi~~~~~~~~~-~~~~~----lGa~-----~~~~~~~~~~~~~~i~~~ 232 (352)
T 1e3j_A 163 RAGVQLGTTVLVIGAGPIGLVSVLAAKAYGAFVVCTARSPRRL-EVAKN----CGAD-----VTLVVDPAKEEESSIIER 232 (352)
T ss_dssp HHTCCTTCEEEEECCSHHHHHHHHHHHHTTCEEEEEESCHHHH-HHHHH----TTCS-----EEEECCTTTSCHHHHHHH
T ss_pred hcCCCCCCEEEEECCCHHHHHHHHHHHHcCCEEEEEcCCHHHH-HHHHH----hCCC-----EEEcCcccccHHHHHHHH
Confidence 3456688999999986 36667777777788899999998765 44432 2221 11222110010
Q ss_pred -C---CCCccEEEEcccccCCcChHHHHHHHHHHHHhcCCCCceEee
Q 026036 144 -P---NPDWDLILASDILLYVKQYSNLIKSLSVLLKSYKPKDSQVGH 186 (244)
Q Consensus 144 -~---~~~fD~I~~~~~l~~~~~~~~l~~~l~~~~~~lk~gG~~~~~ 186 (244)
. ...+|+|+-+-. .+ .+++...+.++++|++++.
T Consensus 233 ~~~~~g~g~D~vid~~g------~~---~~~~~~~~~l~~~G~iv~~ 270 (352)
T 1e3j_A 233 IRSAIGDLPNVTIDCSG------NE---KCITIGINITRTGGTLMLV 270 (352)
T ss_dssp HHHHSSSCCSEEEECSC------CH---HHHHHHHHHSCTTCEEEEC
T ss_pred hccccCCCCCEEEECCC------CH---HHHHHHHHHHhcCCEEEEE
Confidence 0 246999885322 12 4567788999999998775
|
| >2j3h_A NADP-dependent oxidoreductase P1; double bond reductase (AT5G16970), APO form; 2.5A {Arabidopsis thaliana} PDB: 2j3i_A* 2j3j_A* 2j3k_A* | Back alignment and structure |
|---|
Probab=95.65 E-value=0.048 Score=45.22 Aligned_cols=97 Identities=13% Similarity=0.054 Sum_probs=60.5
Q ss_pred hccCcccCCeEEEeCC--CCcHHHHHHHHhCCCeEEEEeCChHHHHHHHHHhHHhcCCCCCcceEeeecCCCCCC-----
Q 026036 71 HHREWIERRRCIELGS--GTGALAIFLRKAMNLDITTSDYNDQEIEDNIAYNSTTNGITPALPHIKHSWGDAFPI----- 143 (244)
Q Consensus 71 ~~~~~~~~~~VLdlG~--G~G~~~~~~a~~~~~~v~~~D~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----- 143 (244)
......+|.+||-.|+ |.|.....+++..+++|+++|.+++.+ +.+++.. +.. ..++..+....
T Consensus 149 ~~~~~~~g~~vlI~Ga~g~iG~~~~~~a~~~G~~V~~~~~~~~~~-~~~~~~~---g~~-----~~~d~~~~~~~~~~~~ 219 (345)
T 2j3h_A 149 EVCSPKEGETVYVSAASGAVGQLVGQLAKMMGCYVVGSAGSKEKV-DLLKTKF---GFD-----DAFNYKEESDLTAALK 219 (345)
T ss_dssp TTSCCCTTCEEEESSTTSHHHHHHHHHHHHTTCEEEEEESSHHHH-HHHHHTS---CCS-----EEEETTSCSCSHHHHH
T ss_pred HHhCCCCCCEEEEECCCcHHHHHHHHHHHHCCCEEEEEeCCHHHH-HHHHHHc---CCc-----eEEecCCHHHHHHHHH
Confidence 3345668899999997 466666666766688999999998765 4443211 221 11222211010
Q ss_pred --CCCCccEEEEcccccCCcChHHHHHHHHHHHHhcCCCCceEee
Q 026036 144 --PNPDWDLILASDILLYVKQYSNLIKSLSVLLKSYKPKDSQVGH 186 (244)
Q Consensus 144 --~~~~fD~I~~~~~l~~~~~~~~l~~~l~~~~~~lk~gG~~~~~ 186 (244)
....+|+|+.+-. . ..++...+.++++|++++.
T Consensus 220 ~~~~~~~d~vi~~~g-------~---~~~~~~~~~l~~~G~~v~~ 254 (345)
T 2j3h_A 220 RCFPNGIDIYFENVG-------G---KMLDAVLVNMNMHGRIAVC 254 (345)
T ss_dssp HHCTTCEEEEEESSC-------H---HHHHHHHTTEEEEEEEEEC
T ss_pred HHhCCCCcEEEECCC-------H---HHHHHHHHHHhcCCEEEEE
Confidence 1246899886422 1 3567788999999998765
|
| >1v3u_A Leukotriene B4 12- hydroxydehydrogenase/prostaglandin 15-keto reductase; rossmann fold, riken structural genomics/proteomics initiative, RSGI; 2.00A {Cavia porcellus} SCOP: b.35.1.2 c.2.1.1 PDB: 1v3t_A 1v3v_A* 2dm6_A* 1zsv_A 2y05_A* | Back alignment and structure |
|---|
Probab=95.61 E-value=0.047 Score=45.04 Aligned_cols=96 Identities=9% Similarity=0.042 Sum_probs=59.5
Q ss_pred hccCcccCCeEEEeCC--CCcHHHHHHHHhCCCeEEEEeCChHHHHHHHHHhHHhcCCCCCcceEeeecCCCCC------
Q 026036 71 HHREWIERRRCIELGS--GTGALAIFLRKAMNLDITTSDYNDQEIEDNIAYNSTTNGITPALPHIKHSWGDAFP------ 142 (244)
Q Consensus 71 ~~~~~~~~~~VLdlG~--G~G~~~~~~a~~~~~~v~~~D~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------ 142 (244)
......+|.+||-.|| |.|.....+++..+.+|+++|.+++.+ +.+++. +. ...++..+...
T Consensus 139 ~~~~~~~g~~vlV~Ga~ggiG~~~~~~~~~~G~~V~~~~~~~~~~-~~~~~~----g~-----~~~~d~~~~~~~~~~~~ 208 (333)
T 1v3u_A 139 EVCGVKGGETVLVSAAAGAVGSVVGQIAKLKGCKVVGAAGSDEKI-AYLKQI----GF-----DAAFNYKTVNSLEEALK 208 (333)
T ss_dssp TTSCCCSSCEEEEESTTBHHHHHHHHHHHHTTCEEEEEESSHHHH-HHHHHT----TC-----SEEEETTSCSCHHHHHH
T ss_pred HhhCCCCCCEEEEecCCCcHHHHHHHHHHHCCCEEEEEeCCHHHH-HHHHhc----CC-----cEEEecCCHHHHHHHHH
Confidence 3445678899999997 455555556666688999999988765 444221 22 11122222000
Q ss_pred -CCCCCccEEEEcccccCCcChHHHHHHHHHHHHhcCCCCceEee
Q 026036 143 -IPNPDWDLILASDILLYVKQYSNLIKSLSVLLKSYKPKDSQVGH 186 (244)
Q Consensus 143 -~~~~~fD~I~~~~~l~~~~~~~~l~~~l~~~~~~lk~gG~~~~~ 186 (244)
...+.+|+++.+-. . ..++...+.+++||++++.
T Consensus 209 ~~~~~~~d~vi~~~g-------~---~~~~~~~~~l~~~G~~v~~ 243 (333)
T 1v3u_A 209 KASPDGYDCYFDNVG-------G---EFLNTVLSQMKDFGKIAIC 243 (333)
T ss_dssp HHCTTCEEEEEESSC-------H---HHHHHHHTTEEEEEEEEEC
T ss_pred HHhCCCCeEEEECCC-------h---HHHHHHHHHHhcCCEEEEE
Confidence 01146999886432 1 3467788999999998765
|
| >3fpc_A NADP-dependent alcohol dehydrogenase; oxydoreductase, bacterial alcohol dehydrogenase, domain exchange, chimera, metal-binding; 1.40A {Thermoanaerobacter brockii} PDB: 2nvb_A* 1ykf_A* 1bxz_A* 3ftn_A 3fsr_A 1y9a_A* 2oui_A* 3fpl_A* 1jqb_A 1kev_A* 1ped_A 2b83_A | Back alignment and structure |
|---|
Probab=95.51 E-value=0.012 Score=49.22 Aligned_cols=99 Identities=14% Similarity=0.076 Sum_probs=60.7
Q ss_pred hccCcccCCeEEEeCCCC-cHHHHHHHHhCCC-eEEEEeCChHHHHHHHHHhHHhcCCCCCcceEeeecCC---CC-C-C
Q 026036 71 HHREWIERRRCIELGSGT-GALAIFLRKAMNL-DITTSDYNDQEIEDNIAYNSTTNGITPALPHIKHSWGD---AF-P-I 143 (244)
Q Consensus 71 ~~~~~~~~~~VLdlG~G~-G~~~~~~a~~~~~-~v~~~D~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~---~~-~-~ 143 (244)
......+|.+||=+|+|. |..++.+++..+. +|+++|.+++.+ +.+++. +.. ..+.....+ .+ . .
T Consensus 160 ~~~~~~~g~~VlV~GaG~vG~~a~qla~~~Ga~~Vi~~~~~~~~~-~~~~~l----Ga~---~vi~~~~~~~~~~v~~~t 231 (352)
T 3fpc_A 160 ELANIKLGDTVCVIGIGPVGLMSVAGANHLGAGRIFAVGSRKHCC-DIALEY----GAT---DIINYKNGDIVEQILKAT 231 (352)
T ss_dssp HHTTCCTTCCEEEECCSHHHHHHHHHHHTTTCSSEEEECCCHHHH-HHHHHH----TCC---EEECGGGSCHHHHHHHHT
T ss_pred HhcCCCCCCEEEEECCCHHHHHHHHHHHHcCCcEEEEECCCHHHH-HHHHHh----CCc---eEEcCCCcCHHHHHHHHc
Confidence 445667899999999863 6777777777777 899999998765 444432 221 011110001 00 0 1
Q ss_pred CCCCccEEEEcccccCCcChHHHHHHHHHHHHhcCCCCceEee
Q 026036 144 PNPDWDLILASDILLYVKQYSNLIKSLSVLLKSYKPKDSQVGH 186 (244)
Q Consensus 144 ~~~~fD~I~~~~~l~~~~~~~~l~~~l~~~~~~lk~gG~~~~~ 186 (244)
....+|+|+-. . . .+ .+++...+.+++||++++.
T Consensus 232 ~g~g~D~v~d~--~---g-~~---~~~~~~~~~l~~~G~~v~~ 265 (352)
T 3fpc_A 232 DGKGVDKVVIA--G---G-DV---HTFAQAVKMIKPGSDIGNV 265 (352)
T ss_dssp TTCCEEEEEEC--S---S-CT---THHHHHHHHEEEEEEEEEC
T ss_pred CCCCCCEEEEC--C---C-Ch---HHHHHHHHHHhcCCEEEEe
Confidence 12369999852 2 1 12 4566788899999998766
|
| >4dvj_A Putative zinc-dependent alcohol dehydrogenase Pro; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 1.99A {Rhizobium etli} | Back alignment and structure |
|---|
Probab=95.49 E-value=0.23 Score=41.52 Aligned_cols=91 Identities=9% Similarity=0.121 Sum_probs=58.6
Q ss_pred cCCeEEEeC-C-CCcHHHHHHHHh-CCCeEEEEeCChHHHHHHHHHhHHhcCCCCCcceEeeecCCC-----CCCCCCCc
Q 026036 77 ERRRCIELG-S-GTGALAIFLRKA-MNLDITTSDYNDQEIEDNIAYNSTTNGITPALPHIKHSWGDA-----FPIPNPDW 148 (244)
Q Consensus 77 ~~~~VLdlG-~-G~G~~~~~~a~~-~~~~v~~~D~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~f 148 (244)
+|.+||=.| + |.|..++.+|+. .+.+|+++|.+++.+ +.+++ .+.. ..++..+. .....+.+
T Consensus 171 ~g~~VlV~Ga~G~vG~~a~qlak~~~g~~Vi~~~~~~~~~-~~~~~----lGad-----~vi~~~~~~~~~v~~~~~~g~ 240 (363)
T 4dvj_A 171 AAPAILIVGGAGGVGSIAVQIARQRTDLTVIATASRPETQ-EWVKS----LGAH-----HVIDHSKPLAAEVAALGLGAP 240 (363)
T ss_dssp SEEEEEEESTTSHHHHHHHHHHHHHCCSEEEEECSSHHHH-HHHHH----TTCS-----EEECTTSCHHHHHHTTCSCCE
T ss_pred CCCEEEEECCCCHHHHHHHHHHHHhcCCEEEEEeCCHHHH-HHHHH----cCCC-----EEEeCCCCHHHHHHHhcCCCc
Confidence 788999998 4 367888888886 688999999998765 54443 2221 11111111 01123479
Q ss_pred cEEEEcccccCCcChHHHHHHHHHHHHhcCCCCceEee
Q 026036 149 DLILASDILLYVKQYSNLIKSLSVLLKSYKPKDSQVGH 186 (244)
Q Consensus 149 D~I~~~~~l~~~~~~~~l~~~l~~~~~~lk~gG~~~~~ 186 (244)
|+|+-+ . ..+ ..++.+.+.++++|++++.
T Consensus 241 Dvvid~--~----g~~---~~~~~~~~~l~~~G~iv~~ 269 (363)
T 4dvj_A 241 AFVFST--T----HTD---KHAAEIADLIAPQGRFCLI 269 (363)
T ss_dssp EEEEEC--S----CHH---HHHHHHHHHSCTTCEEEEC
T ss_pred eEEEEC--C----Cch---hhHHHHHHHhcCCCEEEEE
Confidence 988752 2 112 4667788999999998876
|
| >4b7c_A Probable oxidoreductase; NADP cofactor, rossmann fold; HET: MES; 2.10A {Pseudomonas aeruginosa PA01} PDB: 4b7x_A* | Back alignment and structure |
|---|
Probab=95.45 E-value=0.0087 Score=49.60 Aligned_cols=97 Identities=9% Similarity=-0.015 Sum_probs=61.5
Q ss_pred hccCcccCCeEEEeCC--CCcHHHHHHHHhCCCeEEEEeCChHHHHHHHHHhHHhcCCCCCcceEeeecCCCC------C
Q 026036 71 HHREWIERRRCIELGS--GTGALAIFLRKAMNLDITTSDYNDQEIEDNIAYNSTTNGITPALPHIKHSWGDAF------P 142 (244)
Q Consensus 71 ~~~~~~~~~~VLdlG~--G~G~~~~~~a~~~~~~v~~~D~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~ 142 (244)
......+|.+||-.|+ |.|..+..+++..+.+|+++|.+++.+ +.+.+. .+.. ..++..+.. .
T Consensus 143 ~~~~~~~g~~vlI~Ga~g~iG~~~~~~a~~~Ga~Vi~~~~~~~~~-~~~~~~---~g~~-----~~~~~~~~~~~~~~~~ 213 (336)
T 4b7c_A 143 DVGQPKNGETVVISGAAGAVGSVAGQIARLKGCRVVGIAGGAEKC-RFLVEE---LGFD-----GAIDYKNEDLAAGLKR 213 (336)
T ss_dssp HTTCCCTTCEEEESSTTSHHHHHHHHHHHHTTCEEEEEESSHHHH-HHHHHT---TCCS-----EEEETTTSCHHHHHHH
T ss_pred HhcCCCCCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEeCCHHHH-HHHHHH---cCCC-----EEEECCCHHHHHHHHH
Confidence 4456778999999998 466777777777788999999998765 444222 1221 112221110 0
Q ss_pred CCCCCccEEEEcccccCCcChHHHHHHHHHHHHhcCCCCceEee
Q 026036 143 IPNPDWDLILASDILLYVKQYSNLIKSLSVLLKSYKPKDSQVGH 186 (244)
Q Consensus 143 ~~~~~fD~I~~~~~l~~~~~~~~l~~~l~~~~~~lk~gG~~~~~ 186 (244)
...+.+|+|+.+-. . ..+....+.++++|++++.
T Consensus 214 ~~~~~~d~vi~~~g-------~---~~~~~~~~~l~~~G~iv~~ 247 (336)
T 4b7c_A 214 ECPKGIDVFFDNVG-------G---EILDTVLTRIAFKARIVLC 247 (336)
T ss_dssp HCTTCEEEEEESSC-------H---HHHHHHHTTEEEEEEEEEC
T ss_pred hcCCCceEEEECCC-------c---chHHHHHHHHhhCCEEEEE
Confidence 01246998876321 1 3677788999999998776
|
| >3tka_A Ribosomal RNA small subunit methyltransferase H; HET: SAM CTN PG4; 2.25A {Escherichia coli} | Back alignment and structure |
|---|
Probab=95.44 E-value=0.021 Score=47.34 Aligned_cols=47 Identities=13% Similarity=0.070 Sum_probs=38.7
Q ss_pred hhccCcccCCeEEEeCCCCcHHHHHHHHhC--CCeEEEEeCChHHHHHHH
Q 026036 70 MHHREWIERRRCIELGSGTGALAIFLRKAM--NLDITTSDYNDQEIEDNI 117 (244)
Q Consensus 70 ~~~~~~~~~~~VLdlG~G~G~~~~~~a~~~--~~~v~~~D~~~~~l~~~~ 117 (244)
.+...+.+|..++|..||.|..+..+++.. ..+|+|+|.++.++ +.+
T Consensus 50 l~~L~i~pggiyVD~TlG~GGHS~~iL~~lg~~GrVig~D~Dp~Al-~~A 98 (347)
T 3tka_A 50 VNGLNIRPDGIYIDGTFGRGGHSRLILSQLGEEGRLLAIDRDPQAI-AVA 98 (347)
T ss_dssp HHHTCCCTTCEEEESCCTTSHHHHHHHTTCCTTCEEEEEESCHHHH-HHH
T ss_pred HHhhCCCCCCEEEEeCcCCCHHHHHHHHhCCCCCEEEEEECCHHHH-HHH
Confidence 333455688999999999999999998874 56899999999987 555
|
| >1boo_A Protein (N-4 cytosine-specific methyltransferase PVU II); type II DNA-(cytosine N4) methyltransferase, amino methylation, selenomethionine; HET: SAH; 2.80A {Proteus vulgaris} SCOP: c.66.1.11 | Back alignment and structure |
|---|
Probab=95.38 E-value=0.035 Score=45.89 Aligned_cols=57 Identities=5% Similarity=0.120 Sum_probs=42.3
Q ss_pred HHHHHHhhccCcccCCeEEEeCCCCcHHHHHHHHhCCCeEEEEeCChHHHHHHHHHhHHh
Q 026036 64 SFAEWLMHHREWIERRRCIELGSGTGALAIFLRKAMNLDITTSDYNDQEIEDNIAYNSTT 123 (244)
Q Consensus 64 ~l~~~~~~~~~~~~~~~VLdlG~G~G~~~~~~a~~~~~~v~~~D~~~~~l~~~~~~~~~~ 123 (244)
.|.+.+.... ..+|..|||--||+|..+.++.+. +.+.+++|+++..+ +.++.++..
T Consensus 240 ~l~~~~i~~~-~~~~~~VlDpF~GsGtt~~aa~~~-gr~~ig~e~~~~~~-~~~~~r~~~ 296 (323)
T 1boo_A 240 KLPEFFIRML-TEPDDLVVDIFGGSNTTGLVAERE-SRKWISFEMKPEYV-AASAFRFLD 296 (323)
T ss_dssp HHHHHHHHHH-CCTTCEEEETTCTTCHHHHHHHHT-TCEEEEEESCHHHH-HHHHGGGSC
T ss_pred HHHHHHHHHh-CCCCCEEEECCCCCCHHHHHHHHc-CCCEEEEeCCHHHH-HHHHHHHHh
Confidence 4444444332 247889999999999999887654 89999999999875 666665543
|
| >1g55_A DNA cytosine methyltransferase DNMT2; human DNA methyltransferase homologue; HET: DNA SAH; 1.80A {Homo sapiens} SCOP: c.66.1.26 | Back alignment and structure |
|---|
Probab=95.37 E-value=0.021 Score=47.73 Aligned_cols=72 Identities=22% Similarity=0.234 Sum_probs=47.0
Q ss_pred CeEEEeCCCCcHHHHHHHHhC--CCeEEEEeCChHHHHHHHHHhHHhcCCCCCcceEeeecCCCCC--CCCCCccEEEEc
Q 026036 79 RRCIELGSGTGALAIFLRKAM--NLDITTSDYNDQEIEDNIAYNSTTNGITPALPHIKHSWGDAFP--IPNPDWDLILAS 154 (244)
Q Consensus 79 ~~VLdlG~G~G~~~~~~a~~~--~~~v~~~D~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~fD~I~~~ 154 (244)
.+|+||.||+|.+++.+...+ ...|.++|+++.++ +..+.|..... .+..+..+... .....+|+|++.
T Consensus 3 ~~v~dLFaG~Gg~~~g~~~~G~~~~~v~~~E~d~~a~-~~~~~N~~~~~------~~~~Di~~~~~~~~~~~~~D~l~~g 75 (343)
T 1g55_A 3 LRVLELYSGVGGMHHALRESCIPAQVVAAIDVNTVAN-EVYKYNFPHTQ------LLAKTIEGITLEEFDRLSFDMILMS 75 (343)
T ss_dssp EEEEEETCTTCHHHHHHHHHTCSEEEEEEECCCHHHH-HHHHHHCTTSC------EECSCGGGCCHHHHHHHCCSEEEEC
T ss_pred CeEEEeCcCccHHHHHHHHCCCCceEEEEEeCCHHHH-HHHHHhccccc------cccCCHHHccHhHcCcCCcCEEEEc
Confidence 589999999999999998875 24699999999886 77777753211 11112111110 001158999998
Q ss_pred ccc
Q 026036 155 DIL 157 (244)
Q Consensus 155 ~~l 157 (244)
.+.
T Consensus 76 pPC 78 (343)
T 1g55_A 76 PPC 78 (343)
T ss_dssp CC-
T ss_pred CCC
Confidence 774
|
| >2h6e_A ADH-4, D-arabinose 1-dehydrogenase; rossman fold, medium chain alcohol dehydrogenase, oxidoreduc; 1.80A {Sulfolobus solfataricus} | Back alignment and structure |
|---|
Probab=95.28 E-value=0.012 Score=48.94 Aligned_cols=97 Identities=13% Similarity=0.020 Sum_probs=59.0
Q ss_pred CcccCCeEEEeCCC-CcHHHHHHHHhC--CCeEEEEeCChHHHHHHHHHhHHhcCCCCCcceEe-eecCCCCCCCCCCcc
Q 026036 74 EWIERRRCIELGSG-TGALAIFLRKAM--NLDITTSDYNDQEIEDNIAYNSTTNGITPALPHIK-HSWGDAFPIPNPDWD 149 (244)
Q Consensus 74 ~~~~~~~VLdlG~G-~G~~~~~~a~~~--~~~v~~~D~~~~~l~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~fD 149 (244)
.. +|.+||-+|+| .|..++.+++.. +.+|+++|.+++.+ +.+++. +....+.... .++...+. ....+|
T Consensus 168 ~~-~g~~VlV~GaG~vG~~aiqlak~~~~Ga~Vi~~~~~~~~~-~~~~~l----Ga~~vi~~~~~~~~~~~~~-~g~g~D 240 (344)
T 2h6e_A 168 KF-AEPVVIVNGIGGLAVYTIQILKALMKNITIVGISRSKKHR-DFALEL----GADYVSEMKDAESLINKLT-DGLGAS 240 (344)
T ss_dssp TC-SSCEEEEECCSHHHHHHHHHHHHHCTTCEEEEECSCHHHH-HHHHHH----TCSEEECHHHHHHHHHHHH-TTCCEE
T ss_pred CC-CCCEEEEECCCHHHHHHHHHHHHhcCCCEEEEEeCCHHHH-HHHHHh----CCCEEeccccchHHHHHhh-cCCCcc
Confidence 55 89999999986 366677777777 88999999998765 444431 2210000000 00000000 123699
Q ss_pred EEEEcccccCCcChHHHHHHHHHHHHhcCCCCceEee
Q 026036 150 LILASDILLYVKQYSNLIKSLSVLLKSYKPKDSQVGH 186 (244)
Q Consensus 150 ~I~~~~~l~~~~~~~~l~~~l~~~~~~lk~gG~~~~~ 186 (244)
+|+-.-. .+ ..++...+.++++|++++.
T Consensus 241 ~vid~~g------~~---~~~~~~~~~l~~~G~iv~~ 268 (344)
T 2h6e_A 241 IAIDLVG------TE---ETTYNLGKLLAQEGAIILV 268 (344)
T ss_dssp EEEESSC------CH---HHHHHHHHHEEEEEEEEEC
T ss_pred EEEECCC------Ch---HHHHHHHHHhhcCCEEEEe
Confidence 9886322 12 4667788999999998765
|
| >3uog_A Alcohol dehydrogenase; structural genomics, protein structure initiative, PSI-biolo YORK structural genomics research consortium; 2.20A {Sinorhizobium meliloti 1021} | Back alignment and structure |
|---|
Probab=95.21 E-value=0.049 Score=45.61 Aligned_cols=96 Identities=16% Similarity=0.172 Sum_probs=60.6
Q ss_pred hccCcccCCeEEEeCCC-CcHHHHHHHHhCCCeEEEEeCChHHHHHHHHHhHHhcCCCCCcceEeeecC-CCC-----C-
Q 026036 71 HHREWIERRRCIELGSG-TGALAIFLRKAMNLDITTSDYNDQEIEDNIAYNSTTNGITPALPHIKHSWG-DAF-----P- 142 (244)
Q Consensus 71 ~~~~~~~~~~VLdlG~G-~G~~~~~~a~~~~~~v~~~D~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~-~~~-----~- 142 (244)
......+|.+||=+|+| .|..++.+++..+++|+++|.+++.+ +.+++. +.. . .++.. +.. .
T Consensus 183 ~~~~~~~g~~VlV~G~G~vG~~a~qla~~~Ga~Vi~~~~~~~~~-~~~~~l----Ga~----~-vi~~~~~~~~~~v~~~ 252 (363)
T 3uog_A 183 EKGHLRAGDRVVVQGTGGVALFGLQIAKATGAEVIVTSSSREKL-DRAFAL----GAD----H-GINRLEEDWVERVYAL 252 (363)
T ss_dssp TTTCCCTTCEEEEESSBHHHHHHHHHHHHTTCEEEEEESCHHHH-HHHHHH----TCS----E-EEETTTSCHHHHHHHH
T ss_pred HhcCCCCCCEEEEECCCHHHHHHHHHHHHcCCEEEEEecCchhH-HHHHHc----CCC----E-EEcCCcccHHHHHHHH
Confidence 44566789999999976 36777777777788999999998765 444331 221 1 11211 000 0
Q ss_pred CCCCCccEEEEcccccCCcChHHHHHHHHHHHHhcCCCCceEee
Q 026036 143 IPNPDWDLILASDILLYVKQYSNLIKSLSVLLKSYKPKDSQVGH 186 (244)
Q Consensus 143 ~~~~~fD~I~~~~~l~~~~~~~~l~~~l~~~~~~lk~gG~~~~~ 186 (244)
.....+|+|+-+-. . ..+....+.++++|++++.
T Consensus 253 ~~g~g~D~vid~~g-------~---~~~~~~~~~l~~~G~iv~~ 286 (363)
T 3uog_A 253 TGDRGADHILEIAG-------G---AGLGQSLKAVAPDGRISVI 286 (363)
T ss_dssp HTTCCEEEEEEETT-------S---SCHHHHHHHEEEEEEEEEE
T ss_pred hCCCCceEEEECCC-------h---HHHHHHHHHhhcCCEEEEE
Confidence 01236999885322 1 3455677899999998876
|
| >1eg2_A Modification methylase RSRI; rossmann fold, exocyclic amino DNA methyltransferase RSRI, D binding, DNA modification, DNA methylation; HET: MTA; 1.75A {Rhodobacter sphaeroides} SCOP: c.66.1.11 PDB: 1nw5_A* 1nw6_A* 1nw7_A* 1nw8_A | Back alignment and structure |
|---|
Probab=95.20 E-value=0.048 Score=45.01 Aligned_cols=59 Identities=10% Similarity=0.023 Sum_probs=43.9
Q ss_pred hHHHHHHHHhhccCcccCCeEEEeCCCCcHHHHHHHHhCCCeEEEEeCCh---HHHHHHHHHhHH
Q 026036 61 GTFSFAEWLMHHREWIERRRCIELGSGTGALAIFLRKAMNLDITTSDYND---QEIEDNIAYNST 122 (244)
Q Consensus 61 ~~~~l~~~~~~~~~~~~~~~VLdlG~G~G~~~~~~a~~~~~~v~~~D~~~---~~l~~~~~~~~~ 122 (244)
-...|.+.++.... .+|..|||--||+|..+.++... +.+.+++|+++ ..+ +.++.++.
T Consensus 227 kp~~l~~~~i~~~~-~~~~~vlDpF~GsGtt~~aa~~~-~r~~ig~e~~~~~~~~~-~~~~~Rl~ 288 (319)
T 1eg2_A 227 KPAAVIERLVRALS-HPGSTVLDFFAGSGVTARVAIQE-GRNSICTDAAPVFKEYY-QKQLTFLQ 288 (319)
T ss_dssp CCHHHHHHHHHHHS-CTTCEEEETTCTTCHHHHHHHHH-TCEEEEEESSTHHHHHH-HHHHHHC-
T ss_pred CCHHHHHHHHHHhC-CCCCEEEecCCCCCHHHHHHHHc-CCcEEEEECCccHHHHH-HHHHHHHH
Confidence 34556666554432 47889999999999999888766 88999999999 765 66665544
|
| >2hcy_A Alcohol dehydrogenase 1; tetramer of asymmetric dimers, zinc coordination, intramolec disulfide bonds, oxidoreductase; HET: 8ID; 2.44A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=95.20 E-value=0.051 Score=45.17 Aligned_cols=97 Identities=12% Similarity=0.115 Sum_probs=60.3
Q ss_pred hccCcccCCeEEEeCC--CCcHHHHHHHHhCCCeEEEEeCChHHHHHHHHHhHHhcCCCCCcceEeeecCCCCCC-----
Q 026036 71 HHREWIERRRCIELGS--GTGALAIFLRKAMNLDITTSDYNDQEIEDNIAYNSTTNGITPALPHIKHSWGDAFPI----- 143 (244)
Q Consensus 71 ~~~~~~~~~~VLdlG~--G~G~~~~~~a~~~~~~v~~~D~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----- 143 (244)
......+|.+||-.|+ |.|.....+++..+.+|+++|.+++.+ +.++. .+.. ..++..+....
T Consensus 163 ~~~~~~~g~~vlV~Ga~ggiG~~~~~~a~~~Ga~V~~~~~~~~~~-~~~~~----~g~~-----~~~d~~~~~~~~~~~~ 232 (347)
T 2hcy_A 163 KSANLMAGHWVAISGAAGGLGSLAVQYAKAMGYRVLGIDGGEGKE-ELFRS----IGGE-----VFIDFTKEKDIVGAVL 232 (347)
T ss_dssp HTTTCCTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEECSTTHH-HHHHH----TTCC-----EEEETTTCSCHHHHHH
T ss_pred HhcCCCCCCEEEEECCCchHHHHHHHHHHHCCCcEEEEcCCHHHH-HHHHH----cCCc-----eEEecCccHhHHHHHH
Confidence 3345678899999998 456666666666688999999987655 44432 1221 11232211110
Q ss_pred --CCCCccEEEEcccccCCcChHHHHHHHHHHHHhcCCCCceEee
Q 026036 144 --PNPDWDLILASDILLYVKQYSNLIKSLSVLLKSYKPKDSQVGH 186 (244)
Q Consensus 144 --~~~~fD~I~~~~~l~~~~~~~~l~~~l~~~~~~lk~gG~~~~~ 186 (244)
..+.+|+|+.+-. .. ..++.+.+.++++|+++..
T Consensus 233 ~~~~~~~D~vi~~~g------~~---~~~~~~~~~l~~~G~iv~~ 268 (347)
T 2hcy_A 233 KATDGGAHGVINVSV------SE---AAIEASTRYVRANGTTVLV 268 (347)
T ss_dssp HHHTSCEEEEEECSS------CH---HHHHHHTTSEEEEEEEEEC
T ss_pred HHhCCCCCEEEECCC------cH---HHHHHHHHHHhcCCEEEEE
Confidence 0126899886432 12 4667788999999988765
|
| >3ps9_A TRNA 5-methylaminomethyl-2-thiouridine biosynthes bifunctional protein MNMC; rossmann fold, oxidase, methyl transferase, FAD; HET: FAD SAM; 2.54A {Escherichia coli} PDB: 3awi_A* | Back alignment and structure |
|---|
Probab=95.19 E-value=0.059 Score=49.10 Aligned_cols=127 Identities=13% Similarity=0.116 Sum_probs=72.1
Q ss_pred CCeEEEeCCCCcHHHHHHHHhC-------------CCeEEEEeC---ChHHHHHHHHH---------hHHhcCCCCCc-c
Q 026036 78 RRRCIELGSGTGALAIFLRKAM-------------NLDITTSDY---NDQEIEDNIAY---------NSTTNGITPAL-P 131 (244)
Q Consensus 78 ~~~VLdlG~G~G~~~~~~a~~~-------------~~~v~~~D~---~~~~l~~~~~~---------~~~~~~~~~~~-~ 131 (244)
.-+|||+|-|+|+..+...+.. ..++++++. +.+.+...... .+.. ..+..+ .
T Consensus 67 ~~~i~e~gfG~Gln~l~~~~~~~~~~~~~p~~~~~~l~~~s~E~~p~~~~~l~~~~~~~~~~~~~~~~l~~-~~~~~~~~ 145 (676)
T 3ps9_A 67 LFVVAESGFGTGLNFLTLWQAFDQFREAHPQAQLQRLHFISFEKFPLTRADLALAHQHWPELAPWAEQLQA-QWPMPLPG 145 (676)
T ss_dssp EEEEEEECCTTSHHHHHHHHHHHHHHHHCTTSSCCEEEEEEEESSCCCHHHHHHHHTTCGGGHHHHHHHHH-HCCCCCSE
T ss_pred ceEEEEeCCchHHHHHHHHHHHHHhhhhCcCCCCceEEEEEEeCCCCCHHHHHHHHHhChhhHHHHHHHHH-hCcccCCC
Confidence 3589999999999887765532 135899998 66555322221 0000 011100 1
Q ss_pred -----------eEeeecCCC---CCCC----CCCccEEEEcccccCCcChHHH--HHHHHHHHHhcCCCCceEeeccccc
Q 026036 132 -----------HIKHSWGDA---FPIP----NPDWDLILASDILLYVKQYSNL--IKSLSVLLKSYKPKDSQVGHLTKNE 191 (244)
Q Consensus 132 -----------~~~~~~~~~---~~~~----~~~fD~I~~~~~l~~~~~~~~l--~~~l~~~~~~lk~gG~~~~~~~~~~ 191 (244)
.+.+..+|. ++.. ...||.|+. |.+ .....+++ ...++.+++.++|||++...
T Consensus 146 ~~~~~~~~~~~~l~l~~gd~~~~l~~~~~~~~~~~d~~~~-D~f-~p~~np~~w~~~~~~~l~~~~~~g~~~~t~----- 218 (676)
T 3ps9_A 146 CHRLLLDAGRVTLDLWFGDINELTSQLDDSLNQKVDAWFL-DGF-APAKNPDMWTQNLFNAMARLARPGGTLATF----- 218 (676)
T ss_dssp EEEEEEGGGTEEEEEEESCHHHHGGGBCGGGTTCEEEEEE-CCS-CGGGCGGGSCHHHHHHHHHHEEEEEEEEES-----
T ss_pred ceEEEecCCcEEEEEecCCHHHHHHhcccccCCcccEEEE-CCC-CCcCChhhhhHHHHHHHHHHhCCCCEEEec-----
Confidence 112223321 1211 357999887 554 32222221 27788999999999865431
Q ss_pred CCCCCCCCCCCeEEEeeeeccCccchhhHHHHHhhcCCeEEEec
Q 026036 192 QGEGTEGLPWPAFLMSWRRRIGKEDETIFFTSCENAGLEVKHLG 235 (244)
Q Consensus 192 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gf~v~~~~ 235 (244)
.. ...+.+.+.++||.+....
T Consensus 219 ---------------------~~--~~~vr~~L~~aGf~v~~~~ 239 (676)
T 3ps9_A 219 ---------------------TS--AGFVRRGLQDAGFTMQKRK 239 (676)
T ss_dssp ---------------------CC--CHHHHHHHHHHTCEEEEEE
T ss_pred ---------------------cC--cHHHHHHHHhCCeEEEecc
Confidence 11 2466788899999988754
|
| >3gms_A Putative NADPH:quinone reductase; structural genomics, putative quinone oxidoreductase, unknown function, PSI-2; 1.76A {Bacillus thuringiensis} | Back alignment and structure |
|---|
Probab=95.17 E-value=0.082 Score=43.75 Aligned_cols=96 Identities=14% Similarity=0.042 Sum_probs=58.5
Q ss_pred hccCcccCCeEEEeCCC--CcHHHHHHHHhCCCeEEEEeCChHHHHHHHHHhHHhcCCCCCcceEeeecCCCC------C
Q 026036 71 HHREWIERRRCIELGSG--TGALAIFLRKAMNLDITTSDYNDQEIEDNIAYNSTTNGITPALPHIKHSWGDAF------P 142 (244)
Q Consensus 71 ~~~~~~~~~~VLdlG~G--~G~~~~~~a~~~~~~v~~~D~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~ 142 (244)
......+|.+||-.|+| .|..+..+++..+++|+++|.+++.+ +.+++. +.. ..++..+.. .
T Consensus 138 ~~~~~~~g~~VlV~Ga~g~iG~~~~~~a~~~Ga~Vi~~~~~~~~~-~~~~~l----ga~-----~~~~~~~~~~~~~~~~ 207 (340)
T 3gms_A 138 ETLNLQRNDVLLVNACGSAIGHLFAQLSQILNFRLIAVTRNNKHT-EELLRL----GAA-----YVIDTSTAPLYETVME 207 (340)
T ss_dssp TTSCCCTTCEEEESSTTSHHHHHHHHHHHHHTCEEEEEESSSTTH-HHHHHH----TCS-----EEEETTTSCHHHHHHH
T ss_pred HhcccCCCCEEEEeCCccHHHHHHHHHHHHcCCEEEEEeCCHHHH-HHHHhC----CCc-----EEEeCCcccHHHHHHH
Confidence 34566789999999987 56666667776688999999988655 444431 221 112221110 0
Q ss_pred -CCCCCccEEEEcccccCCcChHHHHHHHHHHHHhcCCCCceEee
Q 026036 143 -IPNPDWDLILASDILLYVKQYSNLIKSLSVLLKSYKPKDSQVGH 186 (244)
Q Consensus 143 -~~~~~fD~I~~~~~l~~~~~~~~l~~~l~~~~~~lk~gG~~~~~ 186 (244)
.....+|+|+-+-. .+ ......+.++++|++++.
T Consensus 208 ~~~~~g~Dvvid~~g------~~----~~~~~~~~l~~~G~iv~~ 242 (340)
T 3gms_A 208 LTNGIGADAAIDSIG------GP----DGNELAFSLRPNGHFLTI 242 (340)
T ss_dssp HTTTSCEEEEEESSC------HH----HHHHHHHTEEEEEEEEEC
T ss_pred HhCCCCCcEEEECCC------Ch----hHHHHHHHhcCCCEEEEE
Confidence 11236999886322 12 123345889999998776
|
| >1rjw_A ADH-HT, alcohol dehydrogenase; oxidoreductase, NAD, zinc, tetramer; 2.35A {Geobacillus stearothermophilus} SCOP: b.35.1.2 c.2.1.1 PDB: 3pii_A | Back alignment and structure |
|---|
Probab=95.11 E-value=0.09 Score=43.52 Aligned_cols=94 Identities=14% Similarity=0.076 Sum_probs=59.9
Q ss_pred cCcccCCeEEEeCCC-CcHHHHHHHHhCCCeEEEEeCChHHHHHHHHHhHHhcCCCCCcceEeeecCCCCCCC------C
Q 026036 73 REWIERRRCIELGSG-TGALAIFLRKAMNLDITTSDYNDQEIEDNIAYNSTTNGITPALPHIKHSWGDAFPIP------N 145 (244)
Q Consensus 73 ~~~~~~~~VLdlG~G-~G~~~~~~a~~~~~~v~~~D~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~ 145 (244)
....+|.+||-+|+| .|..+..+++..+.+|+++|.+++.+ +.+++ .+.. . .++..+. ... .
T Consensus 160 ~~~~~g~~VlV~GaG~vG~~~~~~a~~~Ga~Vi~~~~~~~~~-~~~~~----lGa~----~-~~d~~~~-~~~~~~~~~~ 228 (339)
T 1rjw_A 160 TGAKPGEWVAIYGIGGLGHVAVQYAKAMGLNVVAVDIGDEKL-ELAKE----LGAD----L-VVNPLKE-DAAKFMKEKV 228 (339)
T ss_dssp HTCCTTCEEEEECCSTTHHHHHHHHHHTTCEEEEECSCHHHH-HHHHH----TTCS----E-EECTTTS-CHHHHHHHHH
T ss_pred cCCCCCCEEEEECCCHHHHHHHHHHHHcCCEEEEEeCCHHHH-HHHHH----CCCC----E-EecCCCc-cHHHHHHHHh
Confidence 356688999999985 57777777777788999999998765 44432 1221 1 1222111 000 0
Q ss_pred CCccEEEEcccccCCcChHHHHHHHHHHHHhcCCCCceEee
Q 026036 146 PDWDLILASDILLYVKQYSNLIKSLSVLLKSYKPKDSQVGH 186 (244)
Q Consensus 146 ~~fD~I~~~~~l~~~~~~~~l~~~l~~~~~~lk~gG~~~~~ 186 (244)
+.+|+|+-+-. .+ ..++...+.++++|++++.
T Consensus 229 ~~~d~vid~~g------~~---~~~~~~~~~l~~~G~~v~~ 260 (339)
T 1rjw_A 229 GGVHAAVVTAV------SK---PAFQSAYNSIRRGGACVLV 260 (339)
T ss_dssp SSEEEEEESSC------CH---HHHHHHHHHEEEEEEEEEC
T ss_pred CCCCEEEECCC------CH---HHHHHHHHHhhcCCEEEEe
Confidence 36898876322 12 4567788899999988765
|
| >1zkd_A DUF185; NESG, RPR58, structural genomics, PSI, protein structure INI northeast structural genomics consortium, unknown function; 2.10A {Rhodopseudomonas palustris} SCOP: c.66.1.52 | Back alignment and structure |
|---|
Probab=95.04 E-value=0.097 Score=44.29 Aligned_cols=51 Identities=20% Similarity=0.253 Sum_probs=34.4
Q ss_pred HHHHHHHHhhc---cCcccCCeEEEeCCCCcHHHHHHHHhC--------CCeEEEEeCChHH
Q 026036 62 TFSFAEWLMHH---REWIERRRCIELGSGTGALAIFLRKAM--------NLDITTSDYNDQE 112 (244)
Q Consensus 62 ~~~l~~~~~~~---~~~~~~~~VLdlG~G~G~~~~~~a~~~--------~~~v~~~D~~~~~ 112 (244)
++.++.|+.+. ......-+|+|+|+|.|.++.-+.+.. ..+++.+|+|+..
T Consensus 62 Ge~la~~~~~~w~~~g~p~~~~ivElGaG~GtLa~diL~~l~~~p~~~~~~~y~iVE~Sp~L 123 (387)
T 1zkd_A 62 GELLGLWSASVWKAADEPQTLRLIEIGPGRGTMMADALRALRVLPILYQSLSVHLVEINPVL 123 (387)
T ss_dssp HHHHHHHHHHHHHHTTCCSSEEEEEECCTTSHHHHHHHHHHTTSHHHHTTEEEEEECCCHHH
T ss_pred HHHHHHHHHHHHHHcCCCCCcEEEEECCCcchHHHHHHHHHHhCCccccccEEEEEecCHHH
Confidence 55677776542 222234579999999999876554321 3489999999973
|
| >1jvb_A NAD(H)-dependent alcohol dehydrogenase; archaeon, zinc, oxidoreductase; HET: MSE; 1.85A {Sulfolobus solfataricus} SCOP: b.35.1.2 c.2.1.1 PDB: 1r37_A* 1nto_A 1nvg_A 3i4c_A 2eer_A* | Back alignment and structure |
|---|
Probab=94.95 E-value=0.035 Score=46.19 Aligned_cols=96 Identities=18% Similarity=0.193 Sum_probs=59.5
Q ss_pred ccCcccCCeEEEeCCC--CcHHHHHHHHhC-CCeEEEEeCChHHHHHHHHHhHHhcCCCCCcceEeeecCCCC------C
Q 026036 72 HREWIERRRCIELGSG--TGALAIFLRKAM-NLDITTSDYNDQEIEDNIAYNSTTNGITPALPHIKHSWGDAF------P 142 (244)
Q Consensus 72 ~~~~~~~~~VLdlG~G--~G~~~~~~a~~~-~~~v~~~D~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~ 142 (244)
.....++.+||-.|+| .|.....+++.. +.+|+++|.+++.+ +.+++. +.. ..++..+.. .
T Consensus 165 ~~~~~~g~~vlV~Gagg~iG~~~~~~a~~~~Ga~Vi~~~~~~~~~-~~~~~~----g~~-----~~~~~~~~~~~~~~~~ 234 (347)
T 1jvb_A 165 KASLDPTKTLLVVGAGGGLGTMAVQIAKAVSGATIIGVDVREEAV-EAAKRA----GAD-----YVINASMQDPLAEIRR 234 (347)
T ss_dssp HTTCCTTCEEEEETTTSHHHHHHHHHHHHHTCCEEEEEESSHHHH-HHHHHH----TCS-----EEEETTTSCHHHHHHH
T ss_pred hcCCCCCCEEEEECCCccHHHHHHHHHHHcCCCeEEEEcCCHHHH-HHHHHh----CCC-----EEecCCCccHHHHHHH
Confidence 3456688999999987 445555666666 78999999998765 444321 220 111221110 0
Q ss_pred CCC-CCccEEEEcccccCCcChHHHHHHHHHHHHhcCCCCceEee
Q 026036 143 IPN-PDWDLILASDILLYVKQYSNLIKSLSVLLKSYKPKDSQVGH 186 (244)
Q Consensus 143 ~~~-~~fD~I~~~~~l~~~~~~~~l~~~l~~~~~~lk~gG~~~~~ 186 (244)
... +.+|+|+.+-. .+ ..++...+.++++|++++.
T Consensus 235 ~~~~~~~d~vi~~~g------~~---~~~~~~~~~l~~~G~iv~~ 270 (347)
T 1jvb_A 235 ITESKGVDAVIDLNN------SE---KTLSVYPKALAKQGKYVMV 270 (347)
T ss_dssp HTTTSCEEEEEESCC------CH---HHHTTGGGGEEEEEEEEEC
T ss_pred HhcCCCceEEEECCC------CH---HHHHHHHHHHhcCCEEEEE
Confidence 011 47999886422 12 4567778999999988765
|
| >3goh_A Alcohol dehydrogenase, zinc-containing; NP_718042.1, alcohol dehydrogenase superfamily protein, ALCO dehydrogenase groes-like domain; 1.55A {Shewanella oneidensis} | Back alignment and structure |
|---|
Probab=94.83 E-value=0.019 Score=47.10 Aligned_cols=97 Identities=11% Similarity=0.092 Sum_probs=58.5
Q ss_pred HHHHhhccCcccCCeEEEeCCC-CcHHHHHHHHhCCCeEEEEeCChHHHHHHHHHhHHhcCCCCCcceEeeecCCCCCCC
Q 026036 66 AEWLMHHREWIERRRCIELGSG-TGALAIFLRKAMNLDITTSDYNDQEIEDNIAYNSTTNGITPALPHIKHSWGDAFPIP 144 (244)
Q Consensus 66 ~~~~~~~~~~~~~~~VLdlG~G-~G~~~~~~a~~~~~~v~~~D~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 144 (244)
+-+........+|.+||=+|+| .|..++.+++..+++|++++ +++.+ +.+++. +.. ..+. + .+.+
T Consensus 131 a~~al~~~~~~~g~~VlV~GaG~vG~~a~qlak~~Ga~Vi~~~-~~~~~-~~~~~l----Ga~---~v~~-d-~~~v--- 196 (315)
T 3goh_A 131 AWQAFEKIPLTKQREVLIVGFGAVNNLLTQMLNNAGYVVDLVS-ASLSQ-ALAAKR----GVR---HLYR-E-PSQV--- 196 (315)
T ss_dssp HHHHHTTSCCCSCCEEEEECCSHHHHHHHHHHHHHTCEEEEEC-SSCCH-HHHHHH----TEE---EEES-S-GGGC---
T ss_pred HHHHHhhcCCCCCCEEEEECCCHHHHHHHHHHHHcCCEEEEEE-ChhhH-HHHHHc----CCC---EEEc-C-HHHh---
Confidence 3333455567789999999995 46777777777788999999 77654 444431 220 0111 1 1111
Q ss_pred CCCccEEEEcccccCCcChHHHHHHHHHHHHhcCCCCceEee
Q 026036 145 NPDWDLILASDILLYVKQYSNLIKSLSVLLKSYKPKDSQVGH 186 (244)
Q Consensus 145 ~~~fD~I~~~~~l~~~~~~~~l~~~l~~~~~~lk~gG~~~~~ 186 (244)
...+|+|+- +. - . ..+....+.++++|+++..
T Consensus 197 ~~g~Dvv~d--~~-g---~----~~~~~~~~~l~~~G~~v~~ 228 (315)
T 3goh_A 197 TQKYFAIFD--AV-N---S----QNAAALVPSLKANGHIICI 228 (315)
T ss_dssp CSCEEEEEC--C---------------TTGGGEEEEEEEEEE
T ss_pred CCCccEEEE--CC-C---c----hhHHHHHHHhcCCCEEEEE
Confidence 457998874 32 1 1 1224567899999998776
|
| >3pvc_A TRNA 5-methylaminomethyl-2-thiouridine biosynthes bifunctional protein MNMC; structural genomics, PSI-biology; HET: FAD; 2.31A {Yersinia pestis} PDB: 3sgl_A* | Back alignment and structure |
|---|
Probab=94.81 E-value=0.054 Score=49.48 Aligned_cols=128 Identities=14% Similarity=0.153 Sum_probs=72.1
Q ss_pred cCCeEEEeCCCCcHHHHHHHHhC-------------CCeEEEEeC---ChHHHHHHHHH---------hHHhcCCCCC--
Q 026036 77 ERRRCIELGSGTGALAIFLRKAM-------------NLDITTSDY---NDQEIEDNIAY---------NSTTNGITPA-- 129 (244)
Q Consensus 77 ~~~~VLdlG~G~G~~~~~~a~~~-------------~~~v~~~D~---~~~~l~~~~~~---------~~~~~~~~~~-- 129 (244)
+.-+|+|+|.|+|+..+.+++.. ..+++.++. +.+.+....+. .+. ...+..
T Consensus 58 ~~~~i~e~gfG~G~n~l~~~~~~~~~~~~~p~~~~~~l~~~s~E~~p~~~~~l~~~~~~~~~~~~~~~~l~-~~~~~~~~ 136 (689)
T 3pvc_A 58 QSCIFAETGFGTGLNFLTLWRDFALFRQQSPNATLRRLHYISFEKYPLHVADLASAHARWPELASFAEQLR-AQWPLPLA 136 (689)
T ss_dssp SEEEEEEECCTTSHHHHHHHHHHHHHHHHCTTSSCCEEEEEEEESSCCCHHHHHHHHTTCGGGHHHHHHHH-HTCCCCCS
T ss_pred CceEEEEecCchHHHHHHHHHHHHHhhhhCCCCCCceEEEEEeeCCCCCHHHHHHHHHhCcchhHHHHHHH-HhCcccCC
Confidence 34599999999999988776542 146899998 44433222111 111 111110
Q ss_pred -c---------ceEeeecCCC---CCCC----CCCccEEEEcccccCCcChHHH--HHHHHHHHHhcCCCCceEeecccc
Q 026036 130 -L---------PHIKHSWGDA---FPIP----NPDWDLILASDILLYVKQYSNL--IKSLSVLLKSYKPKDSQVGHLTKN 190 (244)
Q Consensus 130 -~---------~~~~~~~~~~---~~~~----~~~fD~I~~~~~l~~~~~~~~l--~~~l~~~~~~lk~gG~~~~~~~~~ 190 (244)
+ ..+.+..+|. ++.. ...+|.++. |.+ .....+++ ...+..+.++++|||++...
T Consensus 137 ~~~r~~~~~~~~~l~l~~gd~~~~l~~~~~~~~~~~da~fl-D~f-~p~~np~~w~~~~~~~l~~~~~~g~~~~t~---- 210 (689)
T 3pvc_A 137 GCHRILLADGAITLDLWFGDVNTLLPTLDDSLNNQVDAWFL-DGF-APAKNPDMWNEQLFNAMARMTRPGGTFSTF---- 210 (689)
T ss_dssp EEEEEEETTTTEEEEEEESCHHHHGGGCCGGGTTCEEEEEE-CSS-CC--CCTTCSHHHHHHHHHHEEEEEEEEES----
T ss_pred CceEEEecCCcEEEEEEccCHHHHHhhcccccCCceeEEEE-CCC-CCCCChhhhhHHHHHHHHHHhCCCCEEEec----
Confidence 0 0223333432 2222 357999887 443 22111111 27888999999999864421
Q ss_pred cCCCCCCCCCCCeEEEeeeeccCccchhhHHHHHhhcCCeEEEec
Q 026036 191 EQGEGTEGLPWPAFLMSWRRRIGKEDETIFFTSCENAGLEVKHLG 235 (244)
Q Consensus 191 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gf~v~~~~ 235 (244)
.. .....+.+.++||.+..+.
T Consensus 211 ----------------------~~--~~~vr~~l~~aGf~~~~~~ 231 (689)
T 3pvc_A 211 ----------------------TA--AGFVRRGLQQAGFNVTKVK 231 (689)
T ss_dssp ----------------------CC--CHHHHHHHHHTTCEEEEEE
T ss_pred ----------------------cC--cHHHHHHHHhCCeEEEecc
Confidence 11 2466788899999988764
|
| >3qwb_A Probable quinone oxidoreductase; rossmann fold, quinone oxidoreductases, NADPH, cytoplasm and oxidoreductase; HET: NDP; 1.59A {Saccharomyces cerevisiae} PDB: 3qwa_A* | Back alignment and structure |
|---|
Probab=94.73 E-value=0.075 Score=43.85 Aligned_cols=94 Identities=13% Similarity=0.029 Sum_probs=59.5
Q ss_pred cCcccCCeEEEeCC--CCcHHHHHHHHhCCCeEEEEeCChHHHHHHHHHhHHhcCCCCCcceEeeecCCCC------C-C
Q 026036 73 REWIERRRCIELGS--GTGALAIFLRKAMNLDITTSDYNDQEIEDNIAYNSTTNGITPALPHIKHSWGDAF------P-I 143 (244)
Q Consensus 73 ~~~~~~~~VLdlG~--G~G~~~~~~a~~~~~~v~~~D~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~-~ 143 (244)
....+|.+||=.|+ |.|..+..+++..+.+|+++|.+++.+ +.+++. +. ...++..+.. . .
T Consensus 144 ~~~~~g~~vlV~Ga~g~iG~~~~~~a~~~Ga~Vi~~~~~~~~~-~~~~~~----ga-----~~~~~~~~~~~~~~~~~~~ 213 (334)
T 3qwb_A 144 YHVKKGDYVLLFAAAGGVGLILNQLLKMKGAHTIAVASTDEKL-KIAKEY----GA-----EYLINASKEDILRQVLKFT 213 (334)
T ss_dssp SCCCTTCEEEESSTTBHHHHHHHHHHHHTTCEEEEEESSHHHH-HHHHHT----TC-----SEEEETTTSCHHHHHHHHT
T ss_pred ccCCCCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEeCCHHHH-HHHHHc----CC-----cEEEeCCCchHHHHHHHHh
Confidence 35678999999994 466677777777788999999988765 444331 22 1112221110 0 1
Q ss_pred CCCCccEEEEcccccCCcChHHHHHHHHHHHHhcCCCCceEee
Q 026036 144 PNPDWDLILASDILLYVKQYSNLIKSLSVLLKSYKPKDSQVGH 186 (244)
Q Consensus 144 ~~~~fD~I~~~~~l~~~~~~~~l~~~l~~~~~~lk~gG~~~~~ 186 (244)
....+|+|+-+-.- ..++...+.++++|++++.
T Consensus 214 ~~~g~D~vid~~g~----------~~~~~~~~~l~~~G~iv~~ 246 (334)
T 3qwb_A 214 NGKGVDASFDSVGK----------DTFEISLAALKRKGVFVSF 246 (334)
T ss_dssp TTSCEEEEEECCGG----------GGHHHHHHHEEEEEEEEEC
T ss_pred CCCCceEEEECCCh----------HHHHHHHHHhccCCEEEEE
Confidence 12369998863221 3456678899999998776
|
| >1cdo_A Alcohol dehydrogenase; oxidoreductase, oxidoreductase (CH-OH(D)-NAD(A)); HET: NAD; 2.05A {Gadus callarias} SCOP: b.35.1.2 c.2.1.1 | Back alignment and structure |
|---|
Probab=94.67 E-value=0.15 Score=42.75 Aligned_cols=97 Identities=18% Similarity=0.126 Sum_probs=60.4
Q ss_pred hccCcccCCeEEEeCCC-CcHHHHHHHHhCCC-eEEEEeCChHHHHHHHHHhHHhcCCCCCcceEeeecCC---CC----
Q 026036 71 HHREWIERRRCIELGSG-TGALAIFLRKAMNL-DITTSDYNDQEIEDNIAYNSTTNGITPALPHIKHSWGD---AF---- 141 (244)
Q Consensus 71 ~~~~~~~~~~VLdlG~G-~G~~~~~~a~~~~~-~v~~~D~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~---~~---- 141 (244)
......+|.+||-+|+| .|..++.+|+..+. +|+++|.+++.+ +.+++ .+.. . .++..+ ..
T Consensus 186 ~~~~~~~g~~VlV~GaG~vG~~a~qla~~~Ga~~Vi~~~~~~~~~-~~~~~----lGa~----~-vi~~~~~~~~~~~~~ 255 (374)
T 1cdo_A 186 NTAKVEPGSTCAVFGLGAVGLAAVMGCHSAGAKRIIAVDLNPDKF-EKAKV----FGAT----D-FVNPNDHSEPISQVL 255 (374)
T ss_dssp TTTCCCTTCEEEEECCSHHHHHHHHHHHHTTCSEEEEECSCGGGH-HHHHH----TTCC----E-EECGGGCSSCHHHHH
T ss_pred hccCCCCCCEEEEECCCHHHHHHHHHHHHcCCCEEEEEcCCHHHH-HHHHH----hCCc----e-EEeccccchhHHHHH
Confidence 33456688999999986 36667777777777 899999998765 44432 1221 0 111111 00
Q ss_pred -CCCCCCccEEEEcccccCCcChHHHHHHHHHHHHhcCCC-CceEee
Q 026036 142 -PIPNPDWDLILASDILLYVKQYSNLIKSLSVLLKSYKPK-DSQVGH 186 (244)
Q Consensus 142 -~~~~~~fD~I~~~~~l~~~~~~~~l~~~l~~~~~~lk~g-G~~~~~ 186 (244)
....+.+|+|+-+-. .+ ..++...+.++++ |++++.
T Consensus 256 ~~~~~~g~D~vid~~g------~~---~~~~~~~~~l~~~~G~iv~~ 293 (374)
T 1cdo_A 256 SKMTNGGVDFSLECVG------NV---GVMRNALESCLKGWGVSVLV 293 (374)
T ss_dssp HHHHTSCBSEEEECSC------CH---HHHHHHHHTBCTTTCEEEEC
T ss_pred HHHhCCCCCEEEECCC------CH---HHHHHHHHHhhcCCcEEEEE
Confidence 001136899885321 12 4567788999999 998765
|
| >2d8a_A PH0655, probable L-threonine 3-dehydrogenase; pyrococcus horikoshii OT3, structural genomics; HET: NAD; 2.05A {Pyrococcus horikoshii} PDB: 2dfv_A* 3gfb_A* | Back alignment and structure |
|---|
Probab=94.56 E-value=0.15 Score=42.37 Aligned_cols=96 Identities=17% Similarity=0.072 Sum_probs=59.2
Q ss_pred hccCcccCCeEEEeCCC-CcHHHHHHHHhCCC-eEEEEeCChHHHHHHHHHhHHhcCCCCCcceEeeecCCC-----C-C
Q 026036 71 HHREWIERRRCIELGSG-TGALAIFLRKAMNL-DITTSDYNDQEIEDNIAYNSTTNGITPALPHIKHSWGDA-----F-P 142 (244)
Q Consensus 71 ~~~~~~~~~~VLdlG~G-~G~~~~~~a~~~~~-~v~~~D~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~-~ 142 (244)
..... +|.+||-+|+| .|..++.+++..+. +|+++|.+++.+ +.+++. +.. . .++..+. + .
T Consensus 162 ~~~~~-~g~~VlV~GaG~vG~~~~q~a~~~Ga~~Vi~~~~~~~~~-~~~~~~----Ga~----~-~~~~~~~~~~~~v~~ 230 (348)
T 2d8a_A 162 LAGPI-SGKSVLITGAGPLGLLGIAVAKASGAYPVIVSEPSDFRR-ELAKKV----GAD----Y-VINPFEEDVVKEVMD 230 (348)
T ss_dssp TTSCC-TTCCEEEECCSHHHHHHHHHHHHTTCCSEEEECSCHHHH-HHHHHH----TCS----E-EECTTTSCHHHHHHH
T ss_pred HhcCC-CCCEEEEECCCHHHHHHHHHHHHcCCCEEEEECCCHHHH-HHHHHh----CCC----E-EECCCCcCHHHHHHH
Confidence 44456 89999999985 36666667776677 899999998765 444321 220 0 1111111 0 0
Q ss_pred -CCCCCccEEEEcccccCCcChHHHHHHHHHHHHhcCCCCceEee
Q 026036 143 -IPNPDWDLILASDILLYVKQYSNLIKSLSVLLKSYKPKDSQVGH 186 (244)
Q Consensus 143 -~~~~~fD~I~~~~~l~~~~~~~~l~~~l~~~~~~lk~gG~~~~~ 186 (244)
.....+|+|+-+-. .+ ..++.+.+.++++|+++..
T Consensus 231 ~~~g~g~D~vid~~g------~~---~~~~~~~~~l~~~G~iv~~ 266 (348)
T 2d8a_A 231 ITDGNGVDVFLEFSG------AP---KALEQGLQAVTPAGRVSLL 266 (348)
T ss_dssp HTTTSCEEEEEECSC------CH---HHHHHHHHHEEEEEEEEEC
T ss_pred HcCCCCCCEEEECCC------CH---HHHHHHHHHHhcCCEEEEE
Confidence 01236999886322 12 4567788999999988765
|
| >4f3n_A Uncharacterized ACR, COG1565 superfamily; structural genomics, niaid, national institute of allergy AN infectious diseases; 1.75A {Burkholderia thailandensis} PDB: 4g67_A* | Back alignment and structure |
|---|
Probab=94.54 E-value=0.074 Score=45.62 Aligned_cols=51 Identities=25% Similarity=0.273 Sum_probs=34.6
Q ss_pred HHHHHHHHhhccCcccCCeEEEeCCCCcHHHHHHHHhC------CCeEEEEeCChHH
Q 026036 62 TFSFAEWLMHHREWIERRRCIELGSGTGALAIFLRKAM------NLDITTSDYNDQE 112 (244)
Q Consensus 62 ~~~l~~~~~~~~~~~~~~~VLdlG~G~G~~~~~~a~~~------~~~v~~~D~~~~~ 112 (244)
++.++.|+.+........+|+|+|+|+|.++.-+.+.. ..+++.+|+|+..
T Consensus 122 Ge~la~~~~~~~~~~g~~~ivE~GaG~GtLa~DiL~~l~~~~~~~~~y~iVE~Sp~L 178 (432)
T 4f3n_A 122 AQTLARPVAQALDASGTRRVMEFGAGTGKLAAGLLTALAALGVELDEYAIVDLSGEL 178 (432)
T ss_dssp HHHHHHHHHHHHHHHTCCEEEEESCTTSHHHHHHHHHHHHTTCCCSEEEEECTTSSS
T ss_pred HHHHHHHHHHHHHhcCCCeEEEeCCCccHHHHHHHHHHHhcCCCCceEEEEEcCHHH
Confidence 45677776554222224699999999999875554322 3479999999963
|
| >2c0c_A Zinc binding alcohol dehydrogenase, domain containing 2; oxidoreductase, quinone oxidoreductase, medium-chain dehydrogenase/reductase; HET: NAP; 1.45A {Homo sapiens} PDB: 2x1h_A* 2x7h_A* 2wek_A* | Back alignment and structure |
|---|
Probab=94.49 E-value=0.28 Score=40.93 Aligned_cols=94 Identities=13% Similarity=0.129 Sum_probs=60.4
Q ss_pred cCcccCCeEEEeC--CCCcHHHHHHHHhCCCeEEEEeCChHHHHHHHHHhHHhcCCCCCcceEeeecCCC-----C-CCC
Q 026036 73 REWIERRRCIELG--SGTGALAIFLRKAMNLDITTSDYNDQEIEDNIAYNSTTNGITPALPHIKHSWGDA-----F-PIP 144 (244)
Q Consensus 73 ~~~~~~~~VLdlG--~G~G~~~~~~a~~~~~~v~~~D~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~-~~~ 144 (244)
....+|.+||=.| .|.|..+..+++..+++|+++|.+++.+ +.+++ .+.. . .++..+. + ...
T Consensus 159 ~~~~~g~~VlV~Ga~G~iG~~~~q~a~~~Ga~Vi~~~~~~~~~-~~~~~----~Ga~----~-~~~~~~~~~~~~~~~~~ 228 (362)
T 2c0c_A 159 GGLSEGKKVLVTAAAGGTGQFAMQLSKKAKCHVIGTCSSDEKS-AFLKS----LGCD----R-PINYKTEPVGTVLKQEY 228 (362)
T ss_dssp TCCCTTCEEEETTTTBTTHHHHHHHHHHTTCEEEEEESSHHHH-HHHHH----TTCS----E-EEETTTSCHHHHHHHHC
T ss_pred cCCCCCCEEEEeCCCcHHHHHHHHHHHhCCCEEEEEECCHHHH-HHHHH----cCCc----E-EEecCChhHHHHHHHhc
Confidence 3556889999999 3578888888887788999999998655 44433 1221 1 1121111 0 001
Q ss_pred CCCccEEEEcccccCCcChHHHHHHHHHHHHhcCCCCceEee
Q 026036 145 NPDWDLILASDILLYVKQYSNLIKSLSVLLKSYKPKDSQVGH 186 (244)
Q Consensus 145 ~~~fD~I~~~~~l~~~~~~~~l~~~l~~~~~~lk~gG~~~~~ 186 (244)
...+|+|+-+-. . ..++.+.+.++++|++++.
T Consensus 229 ~~g~D~vid~~g-------~---~~~~~~~~~l~~~G~iv~~ 260 (362)
T 2c0c_A 229 PEGVDVVYESVG-------G---AMFDLAVDALATKGRLIVI 260 (362)
T ss_dssp TTCEEEEEECSC-------T---HHHHHHHHHEEEEEEEEEC
T ss_pred CCCCCEEEECCC-------H---HHHHHHHHHHhcCCEEEEE
Confidence 246899886322 1 4567788999999988765
|
| >1rjd_A PPM1P, carboxy methyl transferase for protein phosphatase 2A catalytic subunit; SAM dependent methyltransferase; HET: SAM; 1.80A {Saccharomyces cerevisiae} SCOP: c.66.1.37 PDB: 1rje_A* 1rjf_A 1rjg_A* 2ob2_A* 2ob1_A | Back alignment and structure |
|---|
Probab=94.42 E-value=0.43 Score=39.53 Aligned_cols=106 Identities=10% Similarity=0.137 Sum_probs=64.0
Q ss_pred cCCeEEEeCCCCcHHHHHHHHh-CCCeEEEEeCChHHHHHHHHHhHHhcC--------------------CCCCcceEee
Q 026036 77 ERRRCIELGSGTGALAIFLRKA-MNLDITTSDYNDQEIEDNIAYNSTTNG--------------------ITPALPHIKH 135 (244)
Q Consensus 77 ~~~~VLdlG~G~G~~~~~~a~~-~~~~v~~~D~~~~~l~~~~~~~~~~~~--------------------~~~~~~~~~~ 135 (244)
+...|+.||||......-+... .+.+++-+|. ++.+ +..++.+...+ .+.+...+..
T Consensus 97 ~~~qVV~LGaGlDTr~~RL~~~~~~~~~~EvD~-P~vi-~~K~~~l~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~v~~ 174 (334)
T 1rjd_A 97 EKVQVVNLGCGSDLRMLPLLQMFPHLAYVDIDY-NESV-ELKNSILRESEILRISLGLSKEDTAKSPFLIDQGRYKLAAC 174 (334)
T ss_dssp SSEEEEEETCTTCCTHHHHHHHCTTEEEEEEEC-HHHH-HHHHHHHHHSHHHHHHHTCCSSCCCCTTEEEECSSEEEEEC
T ss_pred CCcEEEEeCCCCccHHHHhcCcCCCCEEEECCC-HHHH-HHHHHHhhhccchhhhcccccccccccccccCCCceEEEec
Confidence 4568999999999888877654 3566777777 4443 44443333220 0123334444
Q ss_pred ecCCC------C-CC-CCCCccEEEEcccccCCcChHHHHHHHHHHHHhcCCCCceEee
Q 026036 136 SWGDA------F-PI-PNPDWDLILASDILLYVKQYSNLIKSLSVLLKSYKPKDSQVGH 186 (244)
Q Consensus 136 ~~~~~------~-~~-~~~~fD~I~~~~~l~~~~~~~~l~~~l~~~~~~lk~gG~~~~~ 186 (244)
+..+. + .. ......++++-.++++ ...+...++++.+.... |+|.+++.
T Consensus 175 DL~d~~w~~~ll~~~~d~~~Ptl~iaEgvL~Y-L~~~~~~~ll~~ia~~~-~~~~~v~~ 231 (334)
T 1rjd_A 175 DLNDITETTRLLDVCTKREIPTIVISECLLCY-MHNNESQLLINTIMSKF-SHGLWISY 231 (334)
T ss_dssp CTTCHHHHHHHHHTTCCTTSCEEEEEESCGGG-SCHHHHHHHHHHHHHHC-SSEEEEEE
T ss_pred CCCCcHHHHHHHHhcCCCCCCEEEEEcchhhC-CCHHHHHHHHHHHHhhC-CCcEEEEE
Confidence 33321 0 11 2245678888888844 55667778888888877 77776544
|
| >3nx4_A Putative oxidoreductase; csgid, structural genomics, center for struc genomics of infectious diseases, PSI, protein structure INI; HET: MSE NAP; 1.90A {Salmonella enterica subsp} PDB: 1o89_A 1o8c_A* | Back alignment and structure |
|---|
Probab=94.41 E-value=0.11 Score=42.51 Aligned_cols=89 Identities=12% Similarity=0.165 Sum_probs=55.9
Q ss_pred eEEEeCC--CCcHHHHHHHHhCCCeEEEEeCChHHHHHHHHHhHHhcCCCCCcceEeeecCC-CCCCCCCCccEEEEccc
Q 026036 80 RCIELGS--GTGALAIFLRKAMNLDITTSDYNDQEIEDNIAYNSTTNGITPALPHIKHSWGD-AFPIPNPDWDLILASDI 156 (244)
Q Consensus 80 ~VLdlG~--G~G~~~~~~a~~~~~~v~~~D~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~fD~I~~~~~ 156 (244)
+||=.|+ |.|..++.+++..+++|++++.+++.+ +.+++. +... .+.....+ ......+.+|+|+- +
T Consensus 149 ~VlV~Ga~G~vG~~aiqla~~~Ga~Vi~~~~~~~~~-~~~~~l----Ga~~---vi~~~~~~~~~~~~~~~~d~v~d--~ 218 (324)
T 3nx4_A 149 EVVVTGASGGVGSTAVALLHKLGYQVAAVSGRESTH-GYLKSL----GANR---ILSRDEFAESRPLEKQLWAGAID--T 218 (324)
T ss_dssp CEEESSTTSHHHHHHHHHHHHTTCCEEEEESCGGGH-HHHHHH----TCSE---EEEGGGSSCCCSSCCCCEEEEEE--S
T ss_pred eEEEECCCcHHHHHHHHHHHHcCCEEEEEeCCHHHH-HHHHhc----CCCE---EEecCCHHHHHhhcCCCccEEEE--C
Confidence 4999986 467788888888888999999988765 555431 2210 11111001 11112346898764 3
Q ss_pred ccCCcChHHHHHHHHHHHHhcCCCCceEee
Q 026036 157 LLYVKQYSNLIKSLSVLLKSYKPKDSQVGH 186 (244)
Q Consensus 157 l~~~~~~~~l~~~l~~~~~~lk~gG~~~~~ 186 (244)
. -. ..++...+.++++|++++.
T Consensus 219 ~-----g~---~~~~~~~~~l~~~G~iv~~ 240 (324)
T 3nx4_A 219 V-----GD---KVLAKVLAQMNYGGCVAAC 240 (324)
T ss_dssp S-----CH---HHHHHHHHTEEEEEEEEEC
T ss_pred C-----Cc---HHHHHHHHHHhcCCEEEEE
Confidence 2 12 3677888999999998776
|
| >2jhf_A Alcohol dehydrogenase E chain; oxidoreductase, metal coordination, NAD, zinc, inhibition, acetylation, metal-binding; HET: NAD; 1.0A {Equus caballus} SCOP: b.35.1.2 c.2.1.1 PDB: 1adc_A* 1adf_A* 1adg_A* 1adb_A* 1bto_A* 1heu_A* 1hf3_A* 1hld_A* 1lde_A* 1ldy_A* 1mg0_A* 1n92_A* 1p1r_A* 1ye3_A 1het_A* 2jhg_A* 2ohx_A* 2oxi_A* 3bto_A* 4dwv_A* ... | Back alignment and structure |
|---|
Probab=94.39 E-value=0.2 Score=41.99 Aligned_cols=97 Identities=18% Similarity=0.123 Sum_probs=59.9
Q ss_pred hccCcccCCeEEEeCCC-CcHHHHHHHHhCCC-eEEEEeCChHHHHHHHHHhHHhcCCCCCcceEeeecCC---CC----
Q 026036 71 HHREWIERRRCIELGSG-TGALAIFLRKAMNL-DITTSDYNDQEIEDNIAYNSTTNGITPALPHIKHSWGD---AF---- 141 (244)
Q Consensus 71 ~~~~~~~~~~VLdlG~G-~G~~~~~~a~~~~~-~v~~~D~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~---~~---- 141 (244)
......+|.+||-+|+| .|..++.+++..+. +|+++|.+++.+ +.+++ .+.. . .++..+ ..
T Consensus 185 ~~~~~~~g~~VlV~GaG~vG~~a~qla~~~Ga~~Vi~~~~~~~~~-~~~~~----lGa~----~-vi~~~~~~~~~~~~~ 254 (374)
T 2jhf_A 185 KVAKVTQGSTCAVFGLGGVGLSVIMGCKAAGAARIIGVDINKDKF-AKAKE----VGAT----E-CVNPQDYKKPIQEVL 254 (374)
T ss_dssp TTTCCCTTCEEEEECCSHHHHHHHHHHHHTTCSEEEEECSCGGGH-HHHHH----TTCS----E-EECGGGCSSCHHHHH
T ss_pred hccCCCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCCHHHH-HHHHH----hCCc----e-EecccccchhHHHHH
Confidence 33456688999999986 36666777777777 899999988765 44432 1221 0 111111 00
Q ss_pred -CCCCCCccEEEEcccccCCcChHHHHHHHHHHHHhcCCC-CceEee
Q 026036 142 -PIPNPDWDLILASDILLYVKQYSNLIKSLSVLLKSYKPK-DSQVGH 186 (244)
Q Consensus 142 -~~~~~~fD~I~~~~~l~~~~~~~~l~~~l~~~~~~lk~g-G~~~~~ 186 (244)
....+.+|+|+-.-. .+ .+++...+.++++ |++++.
T Consensus 255 ~~~~~~g~D~vid~~g------~~---~~~~~~~~~l~~~~G~iv~~ 292 (374)
T 2jhf_A 255 TEMSNGGVDFSFEVIG------RL---DTMVTALSCCQEAYGVSVIV 292 (374)
T ss_dssp HHHTTSCBSEEEECSC------CH---HHHHHHHHHBCTTTCEEEEC
T ss_pred HHHhCCCCcEEEECCC------CH---HHHHHHHHHhhcCCcEEEEe
Confidence 001236999875321 12 4567788999999 998765
|
| >4dup_A Quinone oxidoreductase; PSI-biology, structural genomics, protein structure initiati structural genomics research consortium, nysgrc; 2.45A {Rhizobium etli} | Back alignment and structure |
|---|
Probab=94.38 E-value=0.022 Score=47.54 Aligned_cols=96 Identities=14% Similarity=0.066 Sum_probs=59.7
Q ss_pred hccCcccCCeEEEeCC--CCcHHHHHHHHhCCCeEEEEeCChHHHHHHHHHhHHhcCCCCCcceEeeecCCCC------C
Q 026036 71 HHREWIERRRCIELGS--GTGALAIFLRKAMNLDITTSDYNDQEIEDNIAYNSTTNGITPALPHIKHSWGDAF------P 142 (244)
Q Consensus 71 ~~~~~~~~~~VLdlG~--G~G~~~~~~a~~~~~~v~~~D~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~ 142 (244)
......+|.+||=.|+ |.|..+..+++..+++|+++|.+++.+ +.+++. +.. ..++..+.. .
T Consensus 161 ~~~~~~~g~~VlV~Gg~g~iG~~~~~~a~~~Ga~Vi~~~~~~~~~-~~~~~l----Ga~-----~~~~~~~~~~~~~~~~ 230 (353)
T 4dup_A 161 QMAGLTEGESVLIHGGTSGIGTTAIQLARAFGAEVYATAGSTGKC-EACERL----GAK-----RGINYRSEDFAAVIKA 230 (353)
T ss_dssp TTTCCCTTCEEEESSTTSHHHHHHHHHHHHTTCEEEEEESSHHHH-HHHHHH----TCS-----EEEETTTSCHHHHHHH
T ss_pred HhcCCCCCCEEEEEcCCCHHHHHHHHHHHHcCCEEEEEeCCHHHH-HHHHhc----CCC-----EEEeCCchHHHHHHHH
Confidence 3455678999999953 466777777777788999999998765 444431 220 112221110 0
Q ss_pred CCCCCccEEEEcccccCCcChHHHHHHHHHHHHhcCCCCceEee
Q 026036 143 IPNPDWDLILASDILLYVKQYSNLIKSLSVLLKSYKPKDSQVGH 186 (244)
Q Consensus 143 ~~~~~fD~I~~~~~l~~~~~~~~l~~~l~~~~~~lk~gG~~~~~ 186 (244)
.....+|+|+.+-.- ..+....+.++++|++++.
T Consensus 231 ~~~~g~Dvvid~~g~----------~~~~~~~~~l~~~G~iv~~ 264 (353)
T 4dup_A 231 ETGQGVDIILDMIGA----------AYFERNIASLAKDGCLSII 264 (353)
T ss_dssp HHSSCEEEEEESCCG----------GGHHHHHHTEEEEEEEEEC
T ss_pred HhCCCceEEEECCCH----------HHHHHHHHHhccCCEEEEE
Confidence 012469998864321 2456678899999998776
|
| >1p0f_A NADP-dependent alcohol dehydrogenase; ADH topology, NADP(H)-dependent, oxidoreductase; HET: NAP; 1.80A {Rana perezi} SCOP: b.35.1.2 c.2.1.1 PDB: 1p0c_A* | Back alignment and structure |
|---|
Probab=94.38 E-value=0.16 Score=42.61 Aligned_cols=97 Identities=18% Similarity=0.074 Sum_probs=59.9
Q ss_pred hccCcccCCeEEEeCCC-CcHHHHHHHHhCCC-eEEEEeCChHHHHHHHHHhHHhcCCCCCcceEeeecCC---CC----
Q 026036 71 HHREWIERRRCIELGSG-TGALAIFLRKAMNL-DITTSDYNDQEIEDNIAYNSTTNGITPALPHIKHSWGD---AF---- 141 (244)
Q Consensus 71 ~~~~~~~~~~VLdlG~G-~G~~~~~~a~~~~~-~v~~~D~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~---~~---- 141 (244)
......+|.+||=+|+| .|..++.+|+..++ +|+++|.+++.+ +.+++ .+.. . .++..+ ..
T Consensus 185 ~~~~~~~g~~VlV~GaG~vG~~aiqlak~~Ga~~Vi~~~~~~~~~-~~a~~----lGa~----~-vi~~~~~~~~~~~~i 254 (373)
T 1p0f_A 185 NTAKVTPGSTCAVFGLGGVGFSAIVGCKAAGASRIIGVGTHKDKF-PKAIE----LGAT----E-CLNPKDYDKPIYEVI 254 (373)
T ss_dssp TTTCCCTTCEEEEECCSHHHHHHHHHHHHHTCSEEEEECSCGGGH-HHHHH----TTCS----E-EECGGGCSSCHHHHH
T ss_pred hccCCCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEECCCHHHH-HHHHH----cCCc----E-EEecccccchHHHHH
Confidence 34556789999999986 36666667766676 899999998765 44442 2221 0 111111 00
Q ss_pred -CCCCCCccEEEEcccccCCcChHHHHHHHHHHHHhcCCC-CceEee
Q 026036 142 -PIPNPDWDLILASDILLYVKQYSNLIKSLSVLLKSYKPK-DSQVGH 186 (244)
Q Consensus 142 -~~~~~~fD~I~~~~~l~~~~~~~~l~~~l~~~~~~lk~g-G~~~~~ 186 (244)
....+.+|+|+-. . ..+ .+++...+.++++ |++++.
T Consensus 255 ~~~t~gg~Dvvid~--~----g~~---~~~~~~~~~l~~~~G~iv~~ 292 (373)
T 1p0f_A 255 CEKTNGGVDYAVEC--A----GRI---ETMMNALQSTYCGSGVTVVL 292 (373)
T ss_dssp HHHTTSCBSEEEEC--S----CCH---HHHHHHHHTBCTTTCEEEEC
T ss_pred HHHhCCCCCEEEEC--C----CCH---HHHHHHHHHHhcCCCEEEEE
Confidence 0012369998853 2 112 5667788999999 998765
|
| >2fzw_A Alcohol dehydrogenase class III CHI chain; S-nitrosoglutathione reductase, glutathione-dependent formaldehyde dehydrogenase, oxidoreductase; HET: NAD; 1.84A {Homo sapiens} SCOP: b.35.1.2 c.2.1.1 PDB: 3qj5_A* 1mc5_A* 2fze_A* 1m6w_A* 1ma0_A* 1mp0_A* 1teh_A* 1m6h_A* | Back alignment and structure |
|---|
Probab=94.34 E-value=0.17 Score=42.34 Aligned_cols=97 Identities=16% Similarity=0.111 Sum_probs=59.5
Q ss_pred hccCcccCCeEEEeCCC-CcHHHHHHHHhCCC-eEEEEeCChHHHHHHHHHhHHhcCCCCCcceEeeecCC---CC----
Q 026036 71 HHREWIERRRCIELGSG-TGALAIFLRKAMNL-DITTSDYNDQEIEDNIAYNSTTNGITPALPHIKHSWGD---AF---- 141 (244)
Q Consensus 71 ~~~~~~~~~~VLdlG~G-~G~~~~~~a~~~~~-~v~~~D~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~---~~---- 141 (244)
......+|.+||-+|+| .|..++.+|+..+. +|+++|.+++.+ +.+++. +.. . .++..+ ..
T Consensus 184 ~~~~~~~g~~VlV~GaG~vG~~avqla~~~Ga~~Vi~~~~~~~~~-~~~~~l----Ga~----~-vi~~~~~~~~~~~~v 253 (373)
T 2fzw_A 184 NTAKLEPGSVCAVFGLGGVGLAVIMGCKVAGASRIIGVDINKDKF-ARAKEF----GAT----E-CINPQDFSKPIQEVL 253 (373)
T ss_dssp TTTCCCTTCEEEEECCSHHHHHHHHHHHHHTCSEEEEECSCGGGH-HHHHHH----TCS----E-EECGGGCSSCHHHHH
T ss_pred hhcCCCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCCHHHH-HHHHHc----CCc----e-EeccccccccHHHHH
Confidence 34456789999999975 36666666766676 899999988765 444421 221 0 111111 00
Q ss_pred -CCCCCCccEEEEcccccCCcChHHHHHHHHHHHHhcCCC-CceEee
Q 026036 142 -PIPNPDWDLILASDILLYVKQYSNLIKSLSVLLKSYKPK-DSQVGH 186 (244)
Q Consensus 142 -~~~~~~fD~I~~~~~l~~~~~~~~l~~~l~~~~~~lk~g-G~~~~~ 186 (244)
....+.+|+|+-.-. .+ .+++...+.++++ |++++.
T Consensus 254 ~~~~~~g~D~vid~~g------~~---~~~~~~~~~l~~~~G~iv~~ 291 (373)
T 2fzw_A 254 IEMTDGGVDYSFECIG------NV---KVMRAALEACHKGWGVSVVV 291 (373)
T ss_dssp HHHTTSCBSEEEECSC------CH---HHHHHHHHTBCTTTCEEEEC
T ss_pred HHHhCCCCCEEEECCC------cH---HHHHHHHHhhccCCcEEEEE
Confidence 001236999885321 12 4567788999999 998765
|
| >3jyn_A Quinone oxidoreductase; rossmann fold, protein-NADPH complex; HET: NDP; 2.01A {Pseudomonas syringae PV} PDB: 3jyl_A* | Back alignment and structure |
|---|
Probab=94.25 E-value=0.092 Score=43.17 Aligned_cols=94 Identities=12% Similarity=0.053 Sum_probs=59.0
Q ss_pred cCcccCCeEEEeCC--CCcHHHHHHHHhCCCeEEEEeCChHHHHHHHHHhHHhcCCCCCcceEeeecCCCC------C-C
Q 026036 73 REWIERRRCIELGS--GTGALAIFLRKAMNLDITTSDYNDQEIEDNIAYNSTTNGITPALPHIKHSWGDAF------P-I 143 (244)
Q Consensus 73 ~~~~~~~~VLdlG~--G~G~~~~~~a~~~~~~v~~~D~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~-~ 143 (244)
....+|.+||=.|+ |.|..+..+++..+.+|+++|.+++.+ +.+++. +. ...++..+.. . .
T Consensus 136 ~~~~~g~~VlV~Ga~g~iG~~~~~~a~~~Ga~Vi~~~~~~~~~-~~~~~~----Ga-----~~~~~~~~~~~~~~~~~~~ 205 (325)
T 3jyn_A 136 YQVKPGEIILFHAAAGGVGSLACQWAKALGAKLIGTVSSPEKA-AHAKAL----GA-----WETIDYSHEDVAKRVLELT 205 (325)
T ss_dssp SCCCTTCEEEESSTTSHHHHHHHHHHHHHTCEEEEEESSHHHH-HHHHHH----TC-----SEEEETTTSCHHHHHHHHT
T ss_pred cCCCCCCEEEEEcCCcHHHHHHHHHHHHCCCEEEEEeCCHHHH-HHHHHc----CC-----CEEEeCCCccHHHHHHHHh
Confidence 45668999999983 466777777776688999999998765 444431 22 0112221110 0 1
Q ss_pred CCCCccEEEEcccccCCcChHHHHHHHHHHHHhcCCCCceEee
Q 026036 144 PNPDWDLILASDILLYVKQYSNLIKSLSVLLKSYKPKDSQVGH 186 (244)
Q Consensus 144 ~~~~fD~I~~~~~l~~~~~~~~l~~~l~~~~~~lk~gG~~~~~ 186 (244)
....+|+|+-+-.- ..+....+.++++|++++.
T Consensus 206 ~~~g~Dvvid~~g~----------~~~~~~~~~l~~~G~iv~~ 238 (325)
T 3jyn_A 206 DGKKCPVVYDGVGQ----------DTWLTSLDSVAPRGLVVSF 238 (325)
T ss_dssp TTCCEEEEEESSCG----------GGHHHHHTTEEEEEEEEEC
T ss_pred CCCCceEEEECCCh----------HHHHHHHHHhcCCCEEEEE
Confidence 12369998863221 3455678899999998776
|
| >1e3i_A Alcohol dehydrogenase, class II; HET: NAD; 2.08A {Mus musculus} SCOP: b.35.1.2 c.2.1.1 PDB: 1e3e_A* 1e3l_A* 3cos_A* | Back alignment and structure |
|---|
Probab=94.25 E-value=0.22 Score=41.78 Aligned_cols=97 Identities=16% Similarity=0.107 Sum_probs=60.1
Q ss_pred hccCcccCCeEEEeCCC-CcHHHHHHHHhCCC-eEEEEeCChHHHHHHHHHhHHhcCCCCCcceEeeecCC---CC----
Q 026036 71 HHREWIERRRCIELGSG-TGALAIFLRKAMNL-DITTSDYNDQEIEDNIAYNSTTNGITPALPHIKHSWGD---AF---- 141 (244)
Q Consensus 71 ~~~~~~~~~~VLdlG~G-~G~~~~~~a~~~~~-~v~~~D~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~---~~---- 141 (244)
......+|.+||=+|+| .|..++.+|+..++ +|+++|.+++.+ +.+++ .+.. . .++..+ ..
T Consensus 189 ~~~~~~~g~~VlV~GaG~vG~~aiqlak~~Ga~~Vi~~~~~~~~~-~~a~~----lGa~----~-vi~~~~~~~~~~~~v 258 (376)
T 1e3i_A 189 NTAKVTPGSTCAVFGLGCVGLSAIIGCKIAGASRIIAIDINGEKF-PKAKA----LGAT----D-CLNPRELDKPVQDVI 258 (376)
T ss_dssp TTSCCCTTCEEEEECCSHHHHHHHHHHHHTTCSEEEEECSCGGGH-HHHHH----TTCS----E-EECGGGCSSCHHHHH
T ss_pred HhcCCCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCCHHHH-HHHHH----hCCc----E-EEccccccchHHHHH
Confidence 33456689999999986 46667777777777 899999998765 44432 1221 0 111111 00
Q ss_pred -CCCCCCccEEEEcccccCCcChHHHHHHHHHHHHhcCCC-CceEee
Q 026036 142 -PIPNPDWDLILASDILLYVKQYSNLIKSLSVLLKSYKPK-DSQVGH 186 (244)
Q Consensus 142 -~~~~~~fD~I~~~~~l~~~~~~~~l~~~l~~~~~~lk~g-G~~~~~ 186 (244)
....+.+|+|+-. . ..+ .+++...+.++++ |++++.
T Consensus 259 ~~~~~~g~Dvvid~--~----G~~---~~~~~~~~~l~~~~G~iv~~ 296 (376)
T 1e3i_A 259 TELTAGGVDYSLDC--A----GTA---QTLKAAVDCTVLGWGSCTVV 296 (376)
T ss_dssp HHHHTSCBSEEEES--S----CCH---HHHHHHHHTBCTTTCEEEEC
T ss_pred HHHhCCCccEEEEC--C----CCH---HHHHHHHHHhhcCCCEEEEE
Confidence 0011368998753 2 112 5567788999999 998765
|
| >4eye_A Probable oxidoreductase; structural genomics, niaid, national institute of allergy AN infectious diseases; 2.10A {Mycobacterium abscessus} | Back alignment and structure |
|---|
Probab=94.21 E-value=0.025 Score=46.99 Aligned_cols=96 Identities=10% Similarity=0.117 Sum_probs=60.3
Q ss_pred hccCcccCCeEEEeCC--CCcHHHHHHHHhCCCeEEEEeCChHHHHHHHHHhHHhcCCCCCcceEeeecCCCC-----C-
Q 026036 71 HHREWIERRRCIELGS--GTGALAIFLRKAMNLDITTSDYNDQEIEDNIAYNSTTNGITPALPHIKHSWGDAF-----P- 142 (244)
Q Consensus 71 ~~~~~~~~~~VLdlG~--G~G~~~~~~a~~~~~~v~~~D~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~- 142 (244)
......+|.+||=.|+ |.|..+..+++..+.+|++++.+++.+ +.+++. +.. .. ++..+.. .
T Consensus 153 ~~~~~~~g~~VlV~Gasg~iG~~~~~~a~~~Ga~Vi~~~~~~~~~-~~~~~~----ga~---~v--~~~~~~~~~~v~~~ 222 (342)
T 4eye_A 153 RRGQLRAGETVLVLGAAGGIGTAAIQIAKGMGAKVIAVVNRTAAT-EFVKSV----GAD---IV--LPLEEGWAKAVREA 222 (342)
T ss_dssp TTSCCCTTCEEEESSTTSHHHHHHHHHHHHTTCEEEEEESSGGGH-HHHHHH----TCS---EE--EESSTTHHHHHHHH
T ss_pred HhcCCCCCCEEEEECCCCHHHHHHHHHHHHcCCEEEEEeCCHHHH-HHHHhc----CCc---EE--ecCchhHHHHHHHH
Confidence 3455678999999997 467777777777788999999988755 444432 221 01 1111110 0
Q ss_pred CCCCCccEEEEcccccCCcChHHHHHHHHHHHHhcCCCCceEee
Q 026036 143 IPNPDWDLILASDILLYVKQYSNLIKSLSVLLKSYKPKDSQVGH 186 (244)
Q Consensus 143 ~~~~~fD~I~~~~~l~~~~~~~~l~~~l~~~~~~lk~gG~~~~~ 186 (244)
.....+|+|+-+-.- ..+....+.++++|++++.
T Consensus 223 ~~~~g~Dvvid~~g~----------~~~~~~~~~l~~~G~iv~~ 256 (342)
T 4eye_A 223 TGGAGVDMVVDPIGG----------PAFDDAVRTLASEGRLLVV 256 (342)
T ss_dssp TTTSCEEEEEESCC------------CHHHHHHTEEEEEEEEEC
T ss_pred hCCCCceEEEECCch----------hHHHHHHHhhcCCCEEEEE
Confidence 112369998863221 2456678899999998876
|
| >1yb5_A Quinone oxidoreductase; medium-chain dehydrogenase/reductase, quinon reduction, structural genomics, structural genomics consort; HET: NAP; 1.85A {Homo sapiens} SCOP: b.35.1.2 c.2.1.1 | Back alignment and structure |
|---|
Probab=94.17 E-value=0.14 Score=42.61 Aligned_cols=95 Identities=15% Similarity=0.084 Sum_probs=59.0
Q ss_pred ccCcccCCeEEEeCC--CCcHHHHHHHHhCCCeEEEEeCChHHHHHHHHHhHHhcCCCCCcceEeeecCCCCC-------
Q 026036 72 HREWIERRRCIELGS--GTGALAIFLRKAMNLDITTSDYNDQEIEDNIAYNSTTNGITPALPHIKHSWGDAFP------- 142 (244)
Q Consensus 72 ~~~~~~~~~VLdlG~--G~G~~~~~~a~~~~~~v~~~D~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------- 142 (244)
.....+|.+||-.|+ |.|.....+++..+++|+++|.+++.+ +.++. .+.. ..++..+...
T Consensus 165 ~~~~~~g~~vlV~GasggiG~~~~~~a~~~Ga~Vi~~~~~~~~~-~~~~~----~ga~-----~~~d~~~~~~~~~~~~~ 234 (351)
T 1yb5_A 165 SACVKAGESVLVHGASGGVGLAACQIARAYGLKILGTAGTEEGQ-KIVLQ----NGAH-----EVFNHREVNYIDKIKKY 234 (351)
T ss_dssp TSCCCTTCEEEEETCSSHHHHHHHHHHHHTTCEEEEEESSHHHH-HHHHH----TTCS-----EEEETTSTTHHHHHHHH
T ss_pred hhCCCCcCEEEEECCCChHHHHHHHHHHHCCCEEEEEeCChhHH-HHHHH----cCCC-----EEEeCCCchHHHHHHHH
Confidence 345668899999997 456666666666688999999998765 43332 1221 1122221100
Q ss_pred CCCCCccEEEEcccccCCcChHHHHHHHHHHHHhcCCCCceEee
Q 026036 143 IPNPDWDLILASDILLYVKQYSNLIKSLSVLLKSYKPKDSQVGH 186 (244)
Q Consensus 143 ~~~~~fD~I~~~~~l~~~~~~~~l~~~l~~~~~~lk~gG~~~~~ 186 (244)
.....+|+|+.+-. . ..+....+.++++|++++.
T Consensus 235 ~~~~~~D~vi~~~G-------~---~~~~~~~~~l~~~G~iv~~ 268 (351)
T 1yb5_A 235 VGEKGIDIIIEMLA-------N---VNLSKDLSLLSHGGRVIVV 268 (351)
T ss_dssp HCTTCEEEEEESCH-------H---HHHHHHHHHEEEEEEEEEC
T ss_pred cCCCCcEEEEECCC-------h---HHHHHHHHhccCCCEEEEE
Confidence 01236899886422 1 3456778999999998765
|
| >3ip1_A Alcohol dehydrogenase, zinc-containing; structural genomics, metal-binding, oxidoreductase, PSI-2, protein structure initiative; 2.09A {Thermotoga maritima} | Back alignment and structure |
|---|
Probab=94.16 E-value=0.58 Score=39.62 Aligned_cols=44 Identities=16% Similarity=0.164 Sum_probs=33.7
Q ss_pred CcccCCeEEEeCCC-CcHHHHHHHHhCCC-eEEEEeCChHHHHHHHH
Q 026036 74 EWIERRRCIELGSG-TGALAIFLRKAMNL-DITTSDYNDQEIEDNIA 118 (244)
Q Consensus 74 ~~~~~~~VLdlG~G-~G~~~~~~a~~~~~-~v~~~D~~~~~l~~~~~ 118 (244)
...+|.+||=+|+| .|..++.+|+..+. +|+++|.+++.+ +.++
T Consensus 210 ~~~~g~~VlV~GaG~vG~~aiqlak~~Ga~~Vi~~~~~~~~~-~~~~ 255 (404)
T 3ip1_A 210 GIRPGDNVVILGGGPIGLAAVAILKHAGASKVILSEPSEVRR-NLAK 255 (404)
T ss_dssp CCCTTCEEEEECCSHHHHHHHHHHHHTTCSEEEEECSCHHHH-HHHH
T ss_pred CCCCCCEEEEECCCHHHHHHHHHHHHcCCCEEEEECCCHHHH-HHHH
Confidence 56789999999985 36666777777777 899999998765 5444
|
| >3uko_A Alcohol dehydrogenase class-3; alcohol dehydrogenase III, homodimer, reduction of GSNO, NAD binding, oxidoreductase; HET: NAD SO4; 1.40A {Arabidopsis thaliana} | Back alignment and structure |
|---|
Probab=94.10 E-value=0.05 Score=45.82 Aligned_cols=97 Identities=11% Similarity=0.063 Sum_probs=60.6
Q ss_pred hccCcccCCeEEEeCCC-CcHHHHHHHHhCCC-eEEEEeCChHHHHHHHHHhHHhcCCCCCcceEeeecCC---CC----
Q 026036 71 HHREWIERRRCIELGSG-TGALAIFLRKAMNL-DITTSDYNDQEIEDNIAYNSTTNGITPALPHIKHSWGD---AF---- 141 (244)
Q Consensus 71 ~~~~~~~~~~VLdlG~G-~G~~~~~~a~~~~~-~v~~~D~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~---~~---- 141 (244)
......+|.+||=+|+| .|..++.+++..+. +|+++|.+++.+ +.+++ .+.. ..++..+ ..
T Consensus 187 ~~~~~~~g~~VlV~GaG~vG~~a~q~a~~~Ga~~Vi~~~~~~~~~-~~a~~----lGa~-----~vi~~~~~~~~~~~~i 256 (378)
T 3uko_A 187 NTAKVEPGSNVAIFGLGTVGLAVAEGAKTAGASRIIGIDIDSKKY-ETAKK----FGVN-----EFVNPKDHDKPIQEVI 256 (378)
T ss_dssp TTTCCCTTCCEEEECCSHHHHHHHHHHHHHTCSCEEEECSCTTHH-HHHHT----TTCC-----EEECGGGCSSCHHHHH
T ss_pred hhcCCCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCCHHHH-HHHHH----cCCc-----EEEccccCchhHHHHH
Confidence 44566789999999986 46677777776676 899999988765 44432 2221 0111110 00
Q ss_pred -CCCCCCccEEEEcccccCCcChHHHHHHHHHHHHhcCCC-CceEee
Q 026036 142 -PIPNPDWDLILASDILLYVKQYSNLIKSLSVLLKSYKPK-DSQVGH 186 (244)
Q Consensus 142 -~~~~~~fD~I~~~~~l~~~~~~~~l~~~l~~~~~~lk~g-G~~~~~ 186 (244)
....+.+|+|+-. . ..+ .+++...+.+++| |++++.
T Consensus 257 ~~~~~gg~D~vid~--~----g~~---~~~~~~~~~l~~g~G~iv~~ 294 (378)
T 3uko_A 257 VDLTDGGVDYSFEC--I----GNV---SVMRAALECCHKGWGTSVIV 294 (378)
T ss_dssp HHHTTSCBSEEEEC--S----CCH---HHHHHHHHTBCTTTCEEEEC
T ss_pred HHhcCCCCCEEEEC--C----CCH---HHHHHHHHHhhccCCEEEEE
Confidence 0112379998853 2 122 5677788999996 988776
|
| >2dq4_A L-threonine 3-dehydrogenase; NAD-dependent, oxidoreductase, structural genomics, NPPSFA; HET: MES; 2.50A {Thermus thermophilus} PDB: 2ejv_A* | Back alignment and structure |
|---|
Probab=94.06 E-value=0.088 Score=43.63 Aligned_cols=94 Identities=13% Similarity=0.062 Sum_probs=57.6
Q ss_pred ccCcccCCeEEEeCCC-CcHHHHHHHHhCCC-eEEEEeCChHHHHHHHHHhHHhcCCCCCcceEeeecCCC-C----C-C
Q 026036 72 HREWIERRRCIELGSG-TGALAIFLRKAMNL-DITTSDYNDQEIEDNIAYNSTTNGITPALPHIKHSWGDA-F----P-I 143 (244)
Q Consensus 72 ~~~~~~~~~VLdlG~G-~G~~~~~~a~~~~~-~v~~~D~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~-~----~-~ 143 (244)
.... +|.+||-+|+| .|..++.+++..+. +|+++|.+++.+ +.++.. . .. .++..+. . . .
T Consensus 160 ~~~~-~g~~VlV~GaG~vG~~~~q~a~~~Ga~~Vi~~~~~~~~~-~~~~~l-----a----~~-v~~~~~~~~~~~~~~~ 227 (343)
T 2dq4_A 160 GSGV-SGKSVLITGAGPIGLMAAMVVRASGAGPILVSDPNPYRL-AFARPY-----A----DR-LVNPLEEDLLEVVRRV 227 (343)
T ss_dssp TTCC-TTSCEEEECCSHHHHHHHHHHHHTTCCSEEEECSCHHHH-GGGTTT-----C----SE-EECTTTSCHHHHHHHH
T ss_pred hCCC-CCCEEEEECCCHHHHHHHHHHHHcCCCEEEEECCCHHHH-HHHHHh-----H----Hh-ccCcCccCHHHHHHHh
Confidence 4456 89999999985 36666677777777 899999988654 333221 1 01 1111110 0 0 0
Q ss_pred CCCCccEEEEcccccCCcChHHHHHHHHHHHHhcCCCCceEee
Q 026036 144 PNPDWDLILASDILLYVKQYSNLIKSLSVLLKSYKPKDSQVGH 186 (244)
Q Consensus 144 ~~~~fD~I~~~~~l~~~~~~~~l~~~l~~~~~~lk~gG~~~~~ 186 (244)
....+|+|+-.-. .+ ..++...+.++++|++++.
T Consensus 228 ~~~g~D~vid~~g------~~---~~~~~~~~~l~~~G~iv~~ 261 (343)
T 2dq4_A 228 TGSGVEVLLEFSG------NE---AAIHQGLMALIPGGEARIL 261 (343)
T ss_dssp HSSCEEEEEECSC------CH---HHHHHHHHHEEEEEEEEEC
T ss_pred cCCCCCEEEECCC------CH---HHHHHHHHHHhcCCEEEEE
Confidence 0236899885321 12 4567788999999987765
|
| >1qor_A Quinone oxidoreductase; HET: NAP; 2.20A {Escherichia coli} SCOP: b.35.1.2 c.2.1.1 | Back alignment and structure |
|---|
Probab=94.03 E-value=0.21 Score=40.91 Aligned_cols=95 Identities=12% Similarity=0.044 Sum_probs=57.8
Q ss_pred ccCcccCCeEEEeCC--CCcHHHHHHHHhCCCeEEEEeCChHHHHHHHHHhHHhcCCCCCcceEeeecCCCC------C-
Q 026036 72 HREWIERRRCIELGS--GTGALAIFLRKAMNLDITTSDYNDQEIEDNIAYNSTTNGITPALPHIKHSWGDAF------P- 142 (244)
Q Consensus 72 ~~~~~~~~~VLdlG~--G~G~~~~~~a~~~~~~v~~~D~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~- 142 (244)
.....++.+||-.|+ |.|.....+++..+.+|+++|.+++.+ +.++.. +.. ..++..+.. .
T Consensus 135 ~~~~~~g~~vlV~Ga~ggiG~~~~~~a~~~G~~V~~~~~~~~~~-~~~~~~----g~~-----~~~~~~~~~~~~~~~~~ 204 (327)
T 1qor_A 135 TYEIKPDEQFLFHAAAGGVGLIACQWAKALGAKLIGTVGTAQKA-QSALKA----GAW-----QVINYREEDLVERLKEI 204 (327)
T ss_dssp TSCCCTTCEEEESSTTBHHHHHHHHHHHHHTCEEEEEESSHHHH-HHHHHH----TCS-----EEEETTTSCHHHHHHHH
T ss_pred hhCCCCCCEEEEECCCCHHHHHHHHHHHHcCCEEEEEeCCHHHH-HHHHHc----CCC-----EEEECCCccHHHHHHHH
Confidence 345668899999994 455555555555578999999998765 444331 220 112222110 0
Q ss_pred CCCCCccEEEEcccccCCcChHHHHHHHHHHHHhcCCCCceEee
Q 026036 143 IPNPDWDLILASDILLYVKQYSNLIKSLSVLLKSYKPKDSQVGH 186 (244)
Q Consensus 143 ~~~~~fD~I~~~~~l~~~~~~~~l~~~l~~~~~~lk~gG~~~~~ 186 (244)
.....+|+|+.+-. . ..++.+.+.++++|++++.
T Consensus 205 ~~~~~~D~vi~~~g-------~---~~~~~~~~~l~~~G~iv~~ 238 (327)
T 1qor_A 205 TGGKKVRVVYDSVG-------R---DTWERSLDCLQRRGLMVSF 238 (327)
T ss_dssp TTTCCEEEEEECSC-------G---GGHHHHHHTEEEEEEEEEC
T ss_pred hCCCCceEEEECCc-------h---HHHHHHHHHhcCCCEEEEE
Confidence 01236899886422 1 4566788999999988765
|
| >2j8z_A Quinone oxidoreductase; medium-chain dehydrogenase- reductases, QUIN oxidoreductase, oxidative stress response; HET: NAP; 2.50A {Homo sapiens} PDB: 2oby_A* | Back alignment and structure |
|---|
Probab=94.02 E-value=0.32 Score=40.46 Aligned_cols=95 Identities=11% Similarity=-0.035 Sum_probs=58.0
Q ss_pred ccCcccCCeEEEeCC--CCcHHHHHHHHhCCCeEEEEeCChHHHHHHHHHhHHhcCCCCCcceEeeecCCCC------C-
Q 026036 72 HREWIERRRCIELGS--GTGALAIFLRKAMNLDITTSDYNDQEIEDNIAYNSTTNGITPALPHIKHSWGDAF------P- 142 (244)
Q Consensus 72 ~~~~~~~~~VLdlG~--G~G~~~~~~a~~~~~~v~~~D~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~- 142 (244)
.....+|.+||-.|+ |.|.....+++..+++|+++|.+++.+ +.++.. +.. ..++..+.. .
T Consensus 157 ~~~~~~g~~vlV~Ga~ggiG~~~~~~a~~~Ga~Vi~~~~~~~~~-~~~~~~----g~~-----~~~~~~~~~~~~~~~~~ 226 (354)
T 2j8z_A 157 VGNVQAGDYVLIHAGLSGVGTAAIQLTRMAGAIPLVTAGSQKKL-QMAEKL----GAA-----AGFNYKKEDFSEATLKF 226 (354)
T ss_dssp TSCCCTTCEEEESSTTSHHHHHHHHHHHHTTCEEEEEESCHHHH-HHHHHH----TCS-----EEEETTTSCHHHHHHHH
T ss_pred hcCCCCCCEEEEECCccHHHHHHHHHHHHcCCEEEEEeCCHHHH-HHHHHc----CCc-----EEEecCChHHHHHHHHH
Confidence 345668899999984 456666666666688999999998765 444321 220 112221110 0
Q ss_pred CCCCCccEEEEcccccCCcChHHHHHHHHHHHHhcCCCCceEee
Q 026036 143 IPNPDWDLILASDILLYVKQYSNLIKSLSVLLKSYKPKDSQVGH 186 (244)
Q Consensus 143 ~~~~~fD~I~~~~~l~~~~~~~~l~~~l~~~~~~lk~gG~~~~~ 186 (244)
.....+|+|+.+-.- ..+....+.++++|++++.
T Consensus 227 ~~~~~~d~vi~~~G~----------~~~~~~~~~l~~~G~iv~~ 260 (354)
T 2j8z_A 227 TKGAGVNLILDCIGG----------SYWEKNVNCLALDGRWVLY 260 (354)
T ss_dssp TTTSCEEEEEESSCG----------GGHHHHHHHEEEEEEEEEC
T ss_pred hcCCCceEEEECCCc----------hHHHHHHHhccCCCEEEEE
Confidence 112368998864321 2345667889999988765
|
| >1iz0_A Quinone oxidoreductase; APO-enzyme, riken structural genomics/proteomics initiative, RSGI, structural genomics; 2.30A {Thermus thermophilus} SCOP: b.35.1.2 c.2.1.1 PDB: 1iyz_A 2cf2_D | Back alignment and structure |
|---|
Probab=93.88 E-value=0.029 Score=45.71 Aligned_cols=91 Identities=13% Similarity=0.069 Sum_probs=56.5
Q ss_pred cccCCeEEEeCC--CCcHHHHHHHHhCCCeEEEEeCChHHHHHHHHHhHHhcCCCCCcceEeeecCC-C-CCCCCCCccE
Q 026036 75 WIERRRCIELGS--GTGALAIFLRKAMNLDITTSDYNDQEIEDNIAYNSTTNGITPALPHIKHSWGD-A-FPIPNPDWDL 150 (244)
Q Consensus 75 ~~~~~~VLdlG~--G~G~~~~~~a~~~~~~v~~~D~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~-~-~~~~~~~fD~ 150 (244)
..+|.+||-+|+ |.|..+..+++..+.+|+++|.+++.+ +.+++ .+.. . .++..+ . .......+|+
T Consensus 123 ~~~g~~vlV~Ga~G~vG~~~~~~a~~~Ga~Vi~~~~~~~~~-~~~~~----~ga~----~-~~~~~~~~~~~~~~~~~d~ 192 (302)
T 1iz0_A 123 ARPGEKVLVQAAAGALGTAAVQVARAMGLRVLAAASRPEKL-ALPLA----LGAE----E-AATYAEVPERAKAWGGLDL 192 (302)
T ss_dssp CCTTCEEEESSTTBHHHHHHHHHHHHTTCEEEEEESSGGGS-HHHHH----TTCS----E-EEEGGGHHHHHHHTTSEEE
T ss_pred CCCCCEEEEECCCcHHHHHHHHHHHHCCCEEEEEeCCHHHH-HHHHh----cCCC----E-EEECCcchhHHHHhcCceE
Confidence 668899999997 466777777777788999999987654 44432 1221 1 111111 0 0000046898
Q ss_pred EEEcccccCCcChHHHHHHHHHHHHhcCCCCceEee
Q 026036 151 ILASDILLYVKQYSNLIKSLSVLLKSYKPKDSQVGH 186 (244)
Q Consensus 151 I~~~~~l~~~~~~~~l~~~l~~~~~~lk~gG~~~~~ 186 (244)
|+. -.- ..++...+.++++|+++..
T Consensus 193 vid-~g~----------~~~~~~~~~l~~~G~~v~~ 217 (302)
T 1iz0_A 193 VLE-VRG----------KEVEESLGLLAHGGRLVYI 217 (302)
T ss_dssp EEE-CSC----------TTHHHHHTTEEEEEEEEEC
T ss_pred EEE-CCH----------HHHHHHHHhhccCCEEEEE
Confidence 885 221 2355678899999988765
|
| >1xa0_A Putative NADPH dependent oxidoreductases; structural genomics, protein structure initiative, MCSG; HET: DTY; 2.80A {Geobacillus stearothermophilus} SCOP: b.35.1.2 c.2.1.1 | Back alignment and structure |
|---|
Probab=93.79 E-value=0.091 Score=43.20 Aligned_cols=95 Identities=15% Similarity=0.224 Sum_probs=56.1
Q ss_pred CcccCC-eEEEeCC--CCcHHHHHHHHhCCCeEEEEeCChHHHHHHHHHhHHhcCCCCCcceEeeec--CCCC-CCCCCC
Q 026036 74 EWIERR-RCIELGS--GTGALAIFLRKAMNLDITTSDYNDQEIEDNIAYNSTTNGITPALPHIKHSW--GDAF-PIPNPD 147 (244)
Q Consensus 74 ~~~~~~-~VLdlG~--G~G~~~~~~a~~~~~~v~~~D~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~--~~~~-~~~~~~ 147 (244)
...++. +||=.|+ |.|..++.+++..+++|++++.+++.+ +.+++ .+... .+.... .+.. ......
T Consensus 145 ~~~~g~~~VlV~Ga~G~vG~~~~q~a~~~Ga~vi~~~~~~~~~-~~~~~----lGa~~---~i~~~~~~~~~~~~~~~~~ 216 (328)
T 1xa0_A 145 GLTPERGPVLVTGATGGVGSLAVSMLAKRGYTVEASTGKAAEH-DYLRV----LGAKE---VLAREDVMAERIRPLDKQR 216 (328)
T ss_dssp TCCGGGCCEEESSTTSHHHHHHHHHHHHTTCCEEEEESCTTCH-HHHHH----TTCSE---EEECC---------CCSCC
T ss_pred CCCCCCceEEEecCCCHHHHHHHHHHHHCCCEEEEEECCHHHH-HHHHH----cCCcE---EEecCCcHHHHHHHhcCCc
Confidence 445665 8999997 467777777877788999999987654 44432 12210 111100 0101 111246
Q ss_pred ccEEEEcccccCCcChHHHHHHHHHHHHhcCCCCceEee
Q 026036 148 WDLILASDILLYVKQYSNLIKSLSVLLKSYKPKDSQVGH 186 (244)
Q Consensus 148 fD~I~~~~~l~~~~~~~~l~~~l~~~~~~lk~gG~~~~~ 186 (244)
+|+|+-+-. . ..+....+.++++|++++.
T Consensus 217 ~d~vid~~g-----~-----~~~~~~~~~l~~~G~~v~~ 245 (328)
T 1xa0_A 217 WAAAVDPVG-----G-----RTLATVLSRMRYGGAVAVS 245 (328)
T ss_dssp EEEEEECST-----T-----TTHHHHHHTEEEEEEEEEC
T ss_pred ccEEEECCc-----H-----HHHHHHHHhhccCCEEEEE
Confidence 898875321 1 2355677899999998765
|
| >1wly_A CAAR, 2-haloacrylate reductase; NADPH-dependent oxidoreductase, oxidoreductase; 1.30A {Burkholderia SP} | Back alignment and structure |
|---|
Probab=93.47 E-value=0.26 Score=40.54 Aligned_cols=94 Identities=9% Similarity=0.077 Sum_probs=59.0
Q ss_pred cCcccCCeEEEeCC--CCcHHHHHHHHhCCCeEEEEeCChHHHHHHHHHhHHhcCCCCCcceEeeecCCCC------C-C
Q 026036 73 REWIERRRCIELGS--GTGALAIFLRKAMNLDITTSDYNDQEIEDNIAYNSTTNGITPALPHIKHSWGDAF------P-I 143 (244)
Q Consensus 73 ~~~~~~~~VLdlG~--G~G~~~~~~a~~~~~~v~~~D~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~-~ 143 (244)
....++.+||-.|+ |.|.....+++..+.+|+++|.+++.+ +.+++. +.. ..++..+.. . .
T Consensus 141 ~~~~~g~~vlV~Ga~ggiG~~~~~~a~~~G~~Vi~~~~~~~~~-~~~~~~----g~~-----~~~d~~~~~~~~~i~~~~ 210 (333)
T 1wly_A 141 HKVKPGDYVLIHAAAGGMGHIMVPWARHLGATVIGTVSTEEKA-ETARKL----GCH-----HTINYSTQDFAEVVREIT 210 (333)
T ss_dssp SCCCTTCEEEETTTTSTTHHHHHHHHHHTTCEEEEEESSHHHH-HHHHHH----TCS-----EEEETTTSCHHHHHHHHH
T ss_pred hCCCCCCEEEEECCccHHHHHHHHHHHHCCCEEEEEeCCHHHH-HHHHHc----CCC-----EEEECCCHHHHHHHHHHh
Confidence 45668899999995 577777777776788999999998655 444331 220 112221110 0 0
Q ss_pred CCCCccEEEEcccccCCcChHHHHHHHHHHHHhcCCCCceEee
Q 026036 144 PNPDWDLILASDILLYVKQYSNLIKSLSVLLKSYKPKDSQVGH 186 (244)
Q Consensus 144 ~~~~fD~I~~~~~l~~~~~~~~l~~~l~~~~~~lk~gG~~~~~ 186 (244)
....+|+|+.+-.- ..++...+.++++|++++.
T Consensus 211 ~~~~~d~vi~~~g~----------~~~~~~~~~l~~~G~iv~~ 243 (333)
T 1wly_A 211 GGKGVDVVYDSIGK----------DTLQKSLDCLRPRGMCAAY 243 (333)
T ss_dssp TTCCEEEEEECSCT----------TTHHHHHHTEEEEEEEEEC
T ss_pred CCCCCeEEEECCcH----------HHHHHHHHhhccCCEEEEE
Confidence 12368998864321 3456678899999988765
|
| >1tt7_A YHFP; alcohol dehydrogenase, Zn-dependent, NAD, structural genomics, protein structure initiative, PSI; 2.70A {Bacillus subtilis} SCOP: b.35.1.2 c.2.1.1 PDB: 1y9e_A* | Back alignment and structure |
|---|
Probab=93.08 E-value=0.12 Score=42.45 Aligned_cols=95 Identities=17% Similarity=0.264 Sum_probs=56.6
Q ss_pred CcccCC-eEEEeCC--CCcHHHHHHHHhCCCeEEEEeCChHHHHHHHHHhHHhcCCCCCcceEeee-c-CCCC-CCCCCC
Q 026036 74 EWIERR-RCIELGS--GTGALAIFLRKAMNLDITTSDYNDQEIEDNIAYNSTTNGITPALPHIKHS-W-GDAF-PIPNPD 147 (244)
Q Consensus 74 ~~~~~~-~VLdlG~--G~G~~~~~~a~~~~~~v~~~D~~~~~l~~~~~~~~~~~~~~~~~~~~~~~-~-~~~~-~~~~~~ 147 (244)
...++. +||=.|+ |.|..++.+++..+++|++++.+++.+ +.+++. +... .+... . .+.. ......
T Consensus 146 ~~~~g~~~VlV~Ga~G~vG~~~~q~a~~~Ga~vi~~~~~~~~~-~~~~~l----Ga~~---v~~~~~~~~~~~~~~~~~~ 217 (330)
T 1tt7_A 146 GLSPEKGSVLVTGATGGVGGIAVSMLNKRGYDVVASTGNREAA-DYLKQL----GASE---VISREDVYDGTLKALSKQQ 217 (330)
T ss_dssp TCCGGGCCEEEESTTSHHHHHHHHHHHHHTCCEEEEESSSSTH-HHHHHH----TCSE---EEEHHHHCSSCCCSSCCCC
T ss_pred CcCCCCceEEEECCCCHHHHHHHHHHHHCCCEEEEEeCCHHHH-HHHHHc----CCcE---EEECCCchHHHHHHhhcCC
Confidence 345665 8999997 466667777776688999999987654 444331 2210 11110 0 1111 112246
Q ss_pred ccEEEEcccccCCcChHHHHHHHHHHHHhcCCCCceEee
Q 026036 148 WDLILASDILLYVKQYSNLIKSLSVLLKSYKPKDSQVGH 186 (244)
Q Consensus 148 fD~I~~~~~l~~~~~~~~l~~~l~~~~~~lk~gG~~~~~ 186 (244)
+|+|+-+ . . . ..+....+.++++|++++.
T Consensus 218 ~d~vid~--~---g--~---~~~~~~~~~l~~~G~iv~~ 246 (330)
T 1tt7_A 218 WQGAVDP--V---G--G---KQLASLLSKIQYGGSVAVS 246 (330)
T ss_dssp EEEEEES--C---C--T---HHHHHHHTTEEEEEEEEEC
T ss_pred ccEEEEC--C---c--H---HHHHHHHHhhcCCCEEEEE
Confidence 8988753 2 1 1 3566788999999998765
|
| >3fbg_A Putative arginate lyase; structural genomics, unknown function, PSI-2, protein structure initiative; 1.60A {Staphylococcus haemolyticus} | Back alignment and structure |
|---|
Probab=93.07 E-value=0.13 Score=42.76 Aligned_cols=91 Identities=15% Similarity=0.220 Sum_probs=56.5
Q ss_pred cCCeEEEeC-CC-CcHHHHHHHHhCCCeEEEEeCChHHHHHHHHHhHHhcCCCCCcceEeeecCCCC-----CCCCCCcc
Q 026036 77 ERRRCIELG-SG-TGALAIFLRKAMNLDITTSDYNDQEIEDNIAYNSTTNGITPALPHIKHSWGDAF-----PIPNPDWD 149 (244)
Q Consensus 77 ~~~~VLdlG-~G-~G~~~~~~a~~~~~~v~~~D~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~fD 149 (244)
+|.+||=.| +| .|..+..+++..+++|+++|.+++.+ +.+++. +.. ..++..+.. ......+|
T Consensus 150 ~g~~VlV~gg~G~vG~~a~qla~~~Ga~Vi~~~~~~~~~-~~~~~l----Ga~-----~vi~~~~~~~~~~~~~~~~g~D 219 (346)
T 3fbg_A 150 EGKTLLIINGAGGVGSIATQIAKAYGLRVITTASRNETI-EWTKKM----GAD-----IVLNHKESLLNQFKTQGIELVD 219 (346)
T ss_dssp TTCEEEEESTTSHHHHHHHHHHHHTTCEEEEECCSHHHH-HHHHHH----TCS-----EEECTTSCHHHHHHHHTCCCEE
T ss_pred CCCEEEEEcCCCHHHHHHHHHHHHcCCEEEEEeCCHHHH-HHHHhc----CCc-----EEEECCccHHHHHHHhCCCCcc
Confidence 788999984 43 56667777777788999999988765 554431 221 111111110 01124699
Q ss_pred EEEEcccccCCcChHHHHHHHHHHHHhcCCCCceEee
Q 026036 150 LILASDILLYVKQYSNLIKSLSVLLKSYKPKDSQVGH 186 (244)
Q Consensus 150 ~I~~~~~l~~~~~~~~l~~~l~~~~~~lk~gG~~~~~ 186 (244)
+|+-+ . ..+ ..++.+.+.++++|+++..
T Consensus 220 vv~d~--~----g~~---~~~~~~~~~l~~~G~iv~~ 247 (346)
T 3fbg_A 220 YVFCT--F----NTD---MYYDDMIQLVKPRGHIATI 247 (346)
T ss_dssp EEEES--S----CHH---HHHHHHHHHEEEEEEEEES
T ss_pred EEEEC--C----Cch---HHHHHHHHHhccCCEEEEE
Confidence 88853 2 112 5567788999999998654
|
| >3tqh_A Quinone oxidoreductase; HET: NDP; 2.44A {Coxiella burnetii} | Back alignment and structure |
|---|
Probab=92.79 E-value=0.14 Score=41.93 Aligned_cols=100 Identities=14% Similarity=0.076 Sum_probs=59.5
Q ss_pred HHHHhhccCcccCCeEEEeC-C-CCcHHHHHHHHhCCCeEEEEeCChHHHHHHHHHhHHhcCCCCCcceEeeecCCC--C
Q 026036 66 AEWLMHHREWIERRRCIELG-S-GTGALAIFLRKAMNLDITTSDYNDQEIEDNIAYNSTTNGITPALPHIKHSWGDA--F 141 (244)
Q Consensus 66 ~~~~~~~~~~~~~~~VLdlG-~-G~G~~~~~~a~~~~~~v~~~D~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~--~ 141 (244)
+-+........+|.+||=+| + |.|..++.+++..+++|++++ +++.. +.+++ .+.. ..++..+. .
T Consensus 141 a~~al~~~~~~~g~~vlV~Ga~G~vG~~a~q~a~~~Ga~vi~~~-~~~~~-~~~~~----lGa~-----~~i~~~~~~~~ 209 (321)
T 3tqh_A 141 ALQALNQAEVKQGDVVLIHAGAGGVGHLAIQLAKQKGTTVITTA-SKRNH-AFLKA----LGAE-----QCINYHEEDFL 209 (321)
T ss_dssp HHHHHHHTTCCTTCEEEESSTTSHHHHHHHHHHHHTTCEEEEEE-CHHHH-HHHHH----HTCS-----EEEETTTSCHH
T ss_pred HHHHHHhcCCCCCCEEEEEcCCcHHHHHHHHHHHHcCCEEEEEe-ccchH-HHHHH----cCCC-----EEEeCCCcchh
Confidence 33333445677899999996 4 367778888888888999998 44333 44432 2331 11222111 0
Q ss_pred CCCCCCccEEEEcccccCCcChHHHHHHHHHHHHhcCCCCceEee
Q 026036 142 PIPNPDWDLILASDILLYVKQYSNLIKSLSVLLKSYKPKDSQVGH 186 (244)
Q Consensus 142 ~~~~~~fD~I~~~~~l~~~~~~~~l~~~l~~~~~~lk~gG~~~~~ 186 (244)
......+|+|+-. . .. ..+....+.++++|+++..
T Consensus 210 ~~~~~g~D~v~d~--~----g~----~~~~~~~~~l~~~G~iv~~ 244 (321)
T 3tqh_A 210 LAISTPVDAVIDL--V----GG----DVGIQSIDCLKETGCIVSV 244 (321)
T ss_dssp HHCCSCEEEEEES--S----CH----HHHHHHGGGEEEEEEEEEC
T ss_pred hhhccCCCEEEEC--C----Cc----HHHHHHHHhccCCCEEEEe
Confidence 1111468988752 2 11 2236678999999998766
|
| >2dph_A Formaldehyde dismutase; dismutation of aldehydes, oxidoreductase; HET: NAD; 2.27A {Pseudomonas putida} | Back alignment and structure |
|---|
Probab=92.79 E-value=0.22 Score=42.19 Aligned_cols=103 Identities=13% Similarity=0.077 Sum_probs=61.4
Q ss_pred ccCcccCCeEEEeCCCC-cHHHHHHHHhCCC-eEEEEeCChHHHHHHHHHhHHhcCCCCCcceEeeecCCCCC-------
Q 026036 72 HREWIERRRCIELGSGT-GALAIFLRKAMNL-DITTSDYNDQEIEDNIAYNSTTNGITPALPHIKHSWGDAFP------- 142 (244)
Q Consensus 72 ~~~~~~~~~VLdlG~G~-G~~~~~~a~~~~~-~v~~~D~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------- 142 (244)
.....+|.+||-+|||. |..++.+|+..++ +|+++|.+++.+ +.+++ .+. .. ++..+...
T Consensus 180 ~~~~~~g~~VlV~GaG~vG~~aiqlak~~Ga~~Vi~~~~~~~~~-~~a~~----lGa----~~--i~~~~~~~~~~~~~~ 248 (398)
T 2dph_A 180 SAGVKPGSHVYIAGAGPVGRCAAAGARLLGAACVIVGDQNPERL-KLLSD----AGF----ET--IDLRNSAPLRDQIDQ 248 (398)
T ss_dssp HTTCCTTCEEEEECCSHHHHHHHHHHHHHTCSEEEEEESCHHHH-HHHHT----TTC----EE--EETTSSSCHHHHHHH
T ss_pred HcCCCCCCEEEEECCCHHHHHHHHHHHHcCCCEEEEEcCCHHHH-HHHHH----cCC----cE--EcCCCcchHHHHHHH
Confidence 34566899999999874 7777777776676 899999998765 44432 122 11 22211100
Q ss_pred C-CCCCccEEEEcccccCCc-C-----hHHHHHHHHHHHHhcCCCCceEee
Q 026036 143 I-PNPDWDLILASDILLYVK-Q-----YSNLIKSLSVLLKSYKPKDSQVGH 186 (244)
Q Consensus 143 ~-~~~~fD~I~~~~~l~~~~-~-----~~~l~~~l~~~~~~lk~gG~~~~~ 186 (244)
. ....+|+|+-.-.- ... . ......+++...+.+++||++++.
T Consensus 249 ~~~g~g~Dvvid~~g~-~~~~~~~~~~~~~~~~~~~~~~~~l~~gG~iv~~ 298 (398)
T 2dph_A 249 ILGKPEVDCGVDAVGF-EAHGLGDEANTETPNGALNSLFDVVRAGGAIGIP 298 (398)
T ss_dssp HHSSSCEEEEEECSCT-TCBCSGGGTTSBCTTHHHHHHHHHEEEEEEEECC
T ss_pred HhCCCCCCEEEECCCC-ccccccccccccccHHHHHHHHHHHhcCCEEEEe
Confidence 0 12269998864321 100 0 000114677788999999988765
|
| >4a0s_A Octenoyl-COA reductase/carboxylase; oxidoreductase, transferase, cinnabaramide PKS biosynthesis; HET: CO8 NAP; 1.90A {Streptomyces SP} PDB: 4a10_A | Back alignment and structure |
|---|
Probab=92.73 E-value=0.68 Score=39.75 Aligned_cols=99 Identities=11% Similarity=0.041 Sum_probs=59.1
Q ss_pred cCcccCCeEEEeCC--CCcHHHHHHHHhCCCeEEEEeCChHHHHHHHHHhHHhcCCCCCcceEeeecCCC----------
Q 026036 73 REWIERRRCIELGS--GTGALAIFLRKAMNLDITTSDYNDQEIEDNIAYNSTTNGITPALPHIKHSWGDA---------- 140 (244)
Q Consensus 73 ~~~~~~~~VLdlG~--G~G~~~~~~a~~~~~~v~~~D~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~---------- 140 (244)
....+|.+||=.|+ |.|..++.+++..+++|++++.+++.+ +.+++ .+....+.....++.+.
T Consensus 216 ~~~~~g~~VlV~GasG~iG~~a~qla~~~Ga~vi~~~~~~~~~-~~~~~----lGa~~~i~~~~~~~~~~~~~~~~~~~~ 290 (447)
T 4a0s_A 216 AQMKQGDIVLIWGASGGLGSYAIQFVKNGGGIPVAVVSSAQKE-AAVRA----LGCDLVINRAELGITDDIADDPRRVVE 290 (447)
T ss_dssp TCCCTTCEEEETTTTSHHHHHHHHHHHHTTCEEEEEESSHHHH-HHHHH----TTCCCEEEHHHHTCCTTGGGCHHHHHH
T ss_pred cCCCCCCEEEEECCCCHHHHHHHHHHHHcCCEEEEEeCCHHHH-HHHHh----cCCCEEEecccccccccccccccccch
Confidence 45678999999996 356777777777799999999888765 44432 22211010000000000
Q ss_pred --------C-CCCCCCccEEEEcccccCCcChHHHHHHHHHHHHhcCCCCceEee
Q 026036 141 --------F-PIPNPDWDLILASDILLYVKQYSNLIKSLSVLLKSYKPKDSQVGH 186 (244)
Q Consensus 141 --------~-~~~~~~fD~I~~~~~l~~~~~~~~l~~~l~~~~~~lk~gG~~~~~ 186 (244)
+ ......+|+|+-+-. . ..++...+.++++|++++.
T Consensus 291 ~~~~~~~~v~~~~g~g~Dvvid~~G-------~---~~~~~~~~~l~~~G~iv~~ 335 (447)
T 4a0s_A 291 TGRKLAKLVVEKAGREPDIVFEHTG-------R---VTFGLSVIVARRGGTVVTC 335 (447)
T ss_dssp HHHHHHHHHHHHHSSCCSEEEECSC-------H---HHHHHHHHHSCTTCEEEES
T ss_pred hhhHHHHHHHHHhCCCceEEEECCC-------c---hHHHHHHHHHhcCCEEEEE
Confidence 0 001236899886322 1 3566778899999998776
|
| >2zb4_A Prostaglandin reductase 2; rossmann fold, alternative splicing, cytoplasm, NADP, oxidoreductase; HET: NAP 5OP; 1.63A {Homo sapiens} PDB: 2zb7_A* 2zb8_A* 2w98_A* 2vna_A* 2w4q_A* 1vj1_A 2zb3_A* | Back alignment and structure |
|---|
Probab=92.66 E-value=0.54 Score=39.01 Aligned_cols=96 Identities=5% Similarity=-0.009 Sum_probs=58.4
Q ss_pred ccCcccC--CeEEEeCC--CCcHHHHHHHHhCCC-eEEEEeCChHHHHHHHHHhHHhcCCCCCcceEeeecCCCC-----
Q 026036 72 HREWIER--RRCIELGS--GTGALAIFLRKAMNL-DITTSDYNDQEIEDNIAYNSTTNGITPALPHIKHSWGDAF----- 141 (244)
Q Consensus 72 ~~~~~~~--~~VLdlG~--G~G~~~~~~a~~~~~-~v~~~D~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~----- 141 (244)
.....+| .+||=.|+ |.|.....+++..+. +|+++|.+++.+ +.+++. .+.. ..++..+..
T Consensus 153 ~~~~~~g~~~~vlI~GasggiG~~~~~~a~~~Ga~~Vi~~~~~~~~~-~~~~~~---~g~~-----~~~d~~~~~~~~~~ 223 (357)
T 2zb4_A 153 KGHITAGSNKTMVVSGAAGACGSVAGQIGHFLGCSRVVGICGTHEKC-ILLTSE---LGFD-----AAINYKKDNVAEQL 223 (357)
T ss_dssp HSCCCTTSCCEEEESSTTBHHHHHHHHHHHHTTCSEEEEEESCHHHH-HHHHHT---SCCS-----EEEETTTSCHHHHH
T ss_pred hcCCCCCCccEEEEECCCcHHHHHHHHHHHHCCCCeEEEEeCCHHHH-HHHHHH---cCCc-----eEEecCchHHHHHH
Confidence 3456678 89999997 455555566666677 999999998654 444321 1221 112222110
Q ss_pred -CCCCCCccEEEEcccccCCcChHHHHHHHHHHHHhcCCCCceEee
Q 026036 142 -PIPNPDWDLILASDILLYVKQYSNLIKSLSVLLKSYKPKDSQVGH 186 (244)
Q Consensus 142 -~~~~~~fD~I~~~~~l~~~~~~~~l~~~l~~~~~~lk~gG~~~~~ 186 (244)
....+.+|+++.+-. . ..++...+.++++|++++.
T Consensus 224 ~~~~~~~~d~vi~~~G-------~---~~~~~~~~~l~~~G~iv~~ 259 (357)
T 2zb4_A 224 RESCPAGVDVYFDNVG-------G---NISDTVISQMNENSHIILC 259 (357)
T ss_dssp HHHCTTCEEEEEESCC-------H---HHHHHHHHTEEEEEEEEEC
T ss_pred HHhcCCCCCEEEECCC-------H---HHHHHHHHHhccCcEEEEE
Confidence 001126898886322 1 5677788999999998765
|
| >2qrv_A DNA (cytosine-5)-methyltransferase 3A; DNA methyltransferase 3A (DNMT3A) and ITS regulatory factor; HET: DNA SAH; 2.89A {Homo sapiens} | Back alignment and structure |
|---|
Probab=92.48 E-value=0.24 Score=40.30 Aligned_cols=43 Identities=14% Similarity=0.044 Sum_probs=33.8
Q ss_pred cCCeEEEeCCCCcHHHHHHHHhCCCe--EEEEeCChHHHHHHHHHh
Q 026036 77 ERRRCIELGSGTGALAIFLRKAMNLD--ITTSDYNDQEIEDNIAYN 120 (244)
Q Consensus 77 ~~~~VLdlG~G~G~~~~~~a~~~~~~--v~~~D~~~~~l~~~~~~~ 120 (244)
.+.+|+||-||.|.+++.+...+..- |.++|+++.+. +..+.|
T Consensus 15 ~~~~vidLFaG~GG~~~g~~~aG~~~~~v~a~E~d~~a~-~ty~~N 59 (295)
T 2qrv_A 15 KPIRVLSLFDGIATGLLVLKDLGIQVDRYIASEVCEDSI-TVGMVR 59 (295)
T ss_dssp CCEEEEEETCTTTHHHHHHHHTTBCEEEEEEECCCHHHH-HHHHHH
T ss_pred CCCEEEEeCcCccHHHHHHHHCCCccceEEEEECCHHHH-HHHHHh
Confidence 45699999999999999887765333 69999999876 555555
|
| >3gaz_A Alcohol dehydrogenase superfamily protein; oxidoreductase, PSI-II, alcohol dehydrogenase superf structural genomics; 1.96A {Novosphingobium aromaticivorans} | Back alignment and structure |
|---|
Probab=92.40 E-value=0.43 Score=39.42 Aligned_cols=94 Identities=14% Similarity=0.168 Sum_probs=59.0
Q ss_pred hccCcccCCeEEEeCC--CCcHHHHHHHHhCCCeEEEEeCChHHHHHHHHHhHHhcCCCCCcceEeeecCCCCC------
Q 026036 71 HHREWIERRRCIELGS--GTGALAIFLRKAMNLDITTSDYNDQEIEDNIAYNSTTNGITPALPHIKHSWGDAFP------ 142 (244)
Q Consensus 71 ~~~~~~~~~~VLdlG~--G~G~~~~~~a~~~~~~v~~~D~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------ 142 (244)
......+|.+||=+|+ |.|..+..+++..+++|+++ .+++.+ +.+++. +. .. ++..+...
T Consensus 144 ~~~~~~~g~~VlV~Ga~g~iG~~~~q~a~~~Ga~Vi~~-~~~~~~-~~~~~l----Ga----~~--i~~~~~~~~~~~~~ 211 (343)
T 3gaz_A 144 DRAQVQDGQTVLIQGGGGGVGHVAIQIALARGARVFAT-ARGSDL-EYVRDL----GA----TP--IDASREPEDYAAEH 211 (343)
T ss_dssp TTTCCCTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEE-ECHHHH-HHHHHH----TS----EE--EETTSCHHHHHHHH
T ss_pred HhcCCCCCCEEEEecCCCHHHHHHHHHHHHCCCEEEEE-eCHHHH-HHHHHc----CC----CE--eccCCCHHHHHHHH
Confidence 4456678999999994 46777777787778899999 777654 444331 22 11 12111100
Q ss_pred CCCCCccEEEEcccccCCcChHHHHHHHHHHHHhcCCCCceEee
Q 026036 143 IPNPDWDLILASDILLYVKQYSNLIKSLSVLLKSYKPKDSQVGH 186 (244)
Q Consensus 143 ~~~~~fD~I~~~~~l~~~~~~~~l~~~l~~~~~~lk~gG~~~~~ 186 (244)
.....+|+|+-+ . . . ..+....+.++++|++++.
T Consensus 212 ~~~~g~D~vid~--~---g--~---~~~~~~~~~l~~~G~iv~~ 245 (343)
T 3gaz_A 212 TAGQGFDLVYDT--L---G--G---PVLDASFSAVKRFGHVVSC 245 (343)
T ss_dssp HTTSCEEEEEES--S---C--T---HHHHHHHHHEEEEEEEEES
T ss_pred hcCCCceEEEEC--C---C--c---HHHHHHHHHHhcCCeEEEE
Confidence 012369988752 2 1 1 4566778899999998765
|
| >4eez_A Alcohol dehydrogenase 1; site-saturation mutagenesis, directed evolution, isobutyraldehyde, biofuel, oxidoreductase; HET: PG4; 1.90A {Lactococcus lactis subsp} PDB: 4eex_A* | Back alignment and structure |
|---|
Probab=92.24 E-value=0.085 Score=43.69 Aligned_cols=95 Identities=16% Similarity=0.141 Sum_probs=55.8
Q ss_pred cCcccCCeEEEeCCCCc-HHHHHHHH-hCCCeEEEEeCChHHHHHHHHHhHHhcCCCCCcceEeeecCCCC------C-C
Q 026036 73 REWIERRRCIELGSGTG-ALAIFLRK-AMNLDITTSDYNDQEIEDNIAYNSTTNGITPALPHIKHSWGDAF------P-I 143 (244)
Q Consensus 73 ~~~~~~~~VLdlG~G~G-~~~~~~a~-~~~~~v~~~D~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~-~ 143 (244)
....+|.+||=+|+|.+ .++..+++ .++.+|+++|.+++.+ +.+++. +.. ..++..+.. . .
T Consensus 159 ~~~~~g~~VlV~GaG~~g~~a~~~a~~~~g~~Vi~~~~~~~r~-~~~~~~----Ga~-----~~i~~~~~~~~~~v~~~t 228 (348)
T 4eez_A 159 SGVKPGDWQVIFGAGGLGNLAIQYAKNVFGAKVIAVDINQDKL-NLAKKI----GAD-----VTINSGDVNPVDEIKKIT 228 (348)
T ss_dssp HTCCTTCEEEEECCSHHHHHHHHHHHHTSCCEEEEEESCHHHH-HHHHHT----TCS-----EEEEC-CCCHHHHHHHHT
T ss_pred cCCCCCCEEEEEcCCCccHHHHHHHHHhCCCEEEEEECcHHHh-hhhhhc----CCe-----EEEeCCCCCHHHHhhhhc
Confidence 45568899999999754 44444444 4588999999998754 444322 221 112221110 0 1
Q ss_pred CCCCccEEEEcccccCCcChHHHHHHHHHHHHhcCCCCceEee
Q 026036 144 PNPDWDLILASDILLYVKQYSNLIKSLSVLLKSYKPKDSQVGH 186 (244)
Q Consensus 144 ~~~~fD~I~~~~~l~~~~~~~~l~~~l~~~~~~lk~gG~~~~~ 186 (244)
....+|.++..-. .. .++....+.++++|++++.
T Consensus 229 ~g~g~d~~~~~~~------~~---~~~~~~~~~l~~~G~~v~~ 262 (348)
T 4eez_A 229 GGLGVQSAIVCAV------AR---IAFEQAVASLKPMGKMVAV 262 (348)
T ss_dssp TSSCEEEEEECCS------CH---HHHHHHHHTEEEEEEEEEC
T ss_pred CCCCceEEEEecc------Cc---chhheeheeecCCceEEEE
Confidence 1224666654211 22 5667788999999998776
|
| >2b5w_A Glucose dehydrogenase; nucleotide binding motif, oxidoreductase; HET: FLC NAP; 1.60A {Haloferax mediterranei} PDB: 2b5v_A* 2vwg_A* 2vwh_A* 2vwp_A* 2vwq_A* | Back alignment and structure |
|---|
Probab=92.19 E-value=0.43 Score=39.67 Aligned_cols=94 Identities=16% Similarity=0.172 Sum_probs=57.1
Q ss_pred cCcccC------CeEEEeCCC-CcHHH-HHHH-HhCCCe-EEEEeCChH---HHHHHHHHhHHhcCCCCCcceEeeecCC
Q 026036 73 REWIER------RRCIELGSG-TGALA-IFLR-KAMNLD-ITTSDYNDQ---EIEDNIAYNSTTNGITPALPHIKHSWGD 139 (244)
Q Consensus 73 ~~~~~~------~~VLdlG~G-~G~~~-~~~a-~~~~~~-v~~~D~~~~---~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 139 (244)
....+| .+||=+|+| .|..+ +.+| +..+.+ |+++|.+++ .+ +.+++ .+. ..+ +..+
T Consensus 162 ~~~~~g~~~~~~~~VlV~GaG~vG~~a~iqla~k~~Ga~~Vi~~~~~~~~~~~~-~~~~~----lGa----~~v--~~~~ 230 (357)
T 2b5w_A 162 AYASRSAFDWDPSSAFVLGNGSLGLLTLAMLKVDDKGYENLYCLGRRDRPDPTI-DIIEE----LDA----TYV--DSRQ 230 (357)
T ss_dssp HHHTTTTSCCCCCEEEEECCSHHHHHHHHHHHHCTTCCCEEEEEECCCSSCHHH-HHHHH----TTC----EEE--ETTT
T ss_pred cCCCCCcccCCCCEEEEECCCHHHHHHHHHHHHHHcCCcEEEEEeCCcccHHHH-HHHHH----cCC----ccc--CCCc
Confidence 345577 899999984 46666 6777 666776 999999876 54 44432 122 111 1111
Q ss_pred C----CCCCCCCccEEEEcccccCCcChHHHHHHHHHHHHhcCCCCceEee
Q 026036 140 A----FPIPNPDWDLILASDILLYVKQYSNLIKSLSVLLKSYKPKDSQVGH 186 (244)
Q Consensus 140 ~----~~~~~~~fD~I~~~~~l~~~~~~~~l~~~l~~~~~~lk~gG~~~~~ 186 (244)
. +....+.+|+|+-. . ..+ .+++...+.++++|++++.
T Consensus 231 ~~~~~i~~~~gg~Dvvid~--~----g~~---~~~~~~~~~l~~~G~iv~~ 272 (357)
T 2b5w_A 231 TPVEDVPDVYEQMDFIYEA--T----GFP---KHAIQSVQALAPNGVGALL 272 (357)
T ss_dssp SCGGGHHHHSCCEEEEEEC--S----CCH---HHHHHHHHHEEEEEEEEEC
T ss_pred cCHHHHHHhCCCCCEEEEC--C----CCh---HHHHHHHHHHhcCCEEEEE
Confidence 0 00001268988753 2 112 4567788999999998766
|
| >3krt_A Crotonyl COA reductase; structural genomics, protein structure initiative, NYSGXRC, PSI-2; 2.19A {Streptomyces coelicolor} PDB: 3hzz_A | Back alignment and structure |
|---|
Probab=92.02 E-value=0.43 Score=41.15 Aligned_cols=94 Identities=10% Similarity=0.039 Sum_probs=59.6
Q ss_pred cCcccCCeEEEeCC--CCcHHHHHHHHhCCCeEEEEeCChHHHHHHHHHhHHhcCCCCCcceEeeecCCC-C--------
Q 026036 73 REWIERRRCIELGS--GTGALAIFLRKAMNLDITTSDYNDQEIEDNIAYNSTTNGITPALPHIKHSWGDA-F-------- 141 (244)
Q Consensus 73 ~~~~~~~~VLdlG~--G~G~~~~~~a~~~~~~v~~~D~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~-~-------- 141 (244)
....+|.+||=+|+ |.|..++.+++..+++|++++.+++.+ +.+++. +.. ..++..+. .
T Consensus 224 ~~~~~g~~VlV~GasG~vG~~avqlak~~Ga~vi~~~~~~~~~-~~~~~l----Ga~-----~vi~~~~~d~~~~~~~~~ 293 (456)
T 3krt_A 224 AGMKQGDNVLIWGASGGLGSYATQFALAGGANPICVVSSPQKA-EICRAM----GAE-----AIIDRNAEGYRFWKDENT 293 (456)
T ss_dssp TCCCTTCEEEETTTTSHHHHHHHHHHHHTTCEEEEEESSHHHH-HHHHHH----TCC-----EEEETTTTTCCSEEETTE
T ss_pred cCCCCCCEEEEECCCCHHHHHHHHHHHHcCCeEEEEECCHHHH-HHHHhh----CCc-----EEEecCcCcccccccccc
Confidence 45678999999997 367777788888899999999888765 444331 221 01111110 0
Q ss_pred --------------C-CCCCCccEEEEcccccCCcChHHHHHHHHHHHHhcCCCCceEee
Q 026036 142 --------------P-IPNPDWDLILASDILLYVKQYSNLIKSLSVLLKSYKPKDSQVGH 186 (244)
Q Consensus 142 --------------~-~~~~~fD~I~~~~~l~~~~~~~~l~~~l~~~~~~lk~gG~~~~~ 186 (244)
. .....+|+|+-+ . -. ..+....+.++++|++++.
T Consensus 294 ~~~~~~~~~~~~i~~~t~g~g~Dvvid~--~-----G~---~~~~~~~~~l~~~G~iv~~ 343 (456)
T 3krt_A 294 QDPKEWKRFGKRIRELTGGEDIDIVFEH--P-----GR---ETFGASVFVTRKGGTITTC 343 (456)
T ss_dssp ECHHHHHHHHHHHHHHHTSCCEEEEEEC--S-----CH---HHHHHHHHHEEEEEEEEES
T ss_pred cchHHHHHHHHHHHHHhCCCCCcEEEEc--C-----Cc---hhHHHHHHHhhCCcEEEEE
Confidence 0 012368988752 2 11 4567788899999998775
|
| >4h0n_A DNMT2; SAH binding, transferase; HET: SAH; 2.71A {Spodoptera frugiperda} | Back alignment and structure |
|---|
Probab=91.92 E-value=0.28 Score=40.66 Aligned_cols=42 Identities=19% Similarity=0.133 Sum_probs=33.7
Q ss_pred CeEEEeCCCCcHHHHHHHHhCC--CeEEEEeCChHHHHHHHHHhH
Q 026036 79 RRCIELGSGTGALAIFLRKAMN--LDITTSDYNDQEIEDNIAYNS 121 (244)
Q Consensus 79 ~~VLdlG~G~G~~~~~~a~~~~--~~v~~~D~~~~~l~~~~~~~~ 121 (244)
.+++||.||.|.+++.+...+- .-|.++|+++.+. +..+.|.
T Consensus 4 ~~~idLFaG~GG~~~G~~~aG~~~~~v~a~e~d~~a~-~ty~~N~ 47 (333)
T 4h0n_A 4 HKILELYSGIGGMHCAWKESGLDGEIVAAVDINTVAN-SVYKHNF 47 (333)
T ss_dssp EEEEEETCTTTHHHHHHHHHTCSEEEEEEECCCHHHH-HHHHHHC
T ss_pred CEEEEECcCccHHHHHHHHcCCCceEEEEEeCCHHHH-HHHHHhC
Confidence 4899999999999998877652 4488999999876 6666664
|
| >4a2c_A Galactitol-1-phosphate 5-dehydrogenase; oxidoreductase, metal binding-site; 1.87A {Escherichia coli} | Back alignment and structure |
|---|
Probab=91.06 E-value=2 Score=35.26 Aligned_cols=98 Identities=17% Similarity=0.156 Sum_probs=58.5
Q ss_pred hhccCcccCCeEEEeCCC-CcHHHHHHHHhCCC-eEEEEeCChHHHHHHHHHhHHhcCCCCCcceEeeecCCCCC-----
Q 026036 70 MHHREWIERRRCIELGSG-TGALAIFLRKAMNL-DITTSDYNDQEIEDNIAYNSTTNGITPALPHIKHSWGDAFP----- 142 (244)
Q Consensus 70 ~~~~~~~~~~~VLdlG~G-~G~~~~~~a~~~~~-~v~~~D~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----- 142 (244)
.......+|.+||=.|+| .|.+++.+++..+. .++++|.+++.+ +.+++ .+.. ..++..+...
T Consensus 153 ~~~~~~~~g~~VlV~GaG~vG~~aiq~ak~~G~~~vi~~~~~~~k~-~~a~~----lGa~-----~~i~~~~~~~~~~~~ 222 (346)
T 4a2c_A 153 FHLAQGCENKNVIIIGAGTIGLLAIQCAVALGAKSVTAIDISSEKL-ALAKS----FGAM-----QTFNSSEMSAPQMQS 222 (346)
T ss_dssp HHHTTCCTTSEEEEECCSHHHHHHHHHHHHTTCSEEEEEESCHHHH-HHHHH----TTCS-----EEEETTTSCHHHHHH
T ss_pred HHHhccCCCCEEEEECCCCcchHHHHHHHHcCCcEEEEEechHHHH-HHHHH----cCCe-----EEEeCCCCCHHHHHH
Confidence 334556789999999986 45556666666654 578999998765 54443 2221 1122211100
Q ss_pred --CCCCCccEEEEcccccCCcChHHHHHHHHHHHHhcCCCCceEee
Q 026036 143 --IPNPDWDLILASDILLYVKQYSNLIKSLSVLLKSYKPKDSQVGH 186 (244)
Q Consensus 143 --~~~~~fD~I~~~~~l~~~~~~~~l~~~l~~~~~~lk~gG~~~~~ 186 (244)
.....+|+|+-.-. .+ .+++...+.+++||++++.
T Consensus 223 ~~~~~~g~d~v~d~~G------~~---~~~~~~~~~l~~~G~~v~~ 259 (346)
T 4a2c_A 223 VLRELRFNQLILETAG------VP---QTVELAVEIAGPHAQLALV 259 (346)
T ss_dssp HHGGGCSSEEEEECSC------SH---HHHHHHHHHCCTTCEEEEC
T ss_pred hhcccCCccccccccc------cc---chhhhhhheecCCeEEEEE
Confidence 01235787765321 23 5667788999999998776
|
| >3tos_A CALS11; methyltransferase, calicheamicin, structural genomic protein structure initiative, PSI, natPro; HET: MSE SAH GLU; 1.55A {Micromonospora echinospora} PDB: 4gf5_A* | Back alignment and structure |
|---|
Probab=90.59 E-value=0.89 Score=36.12 Aligned_cols=66 Identities=11% Similarity=0.000 Sum_probs=42.1
Q ss_pred CCCccEEEEcccccCCcChHHHHHHHHHHHHhcCCCCceEeecccccCCCCCCCCCCCeEEEeeeeccCccchhhHHHHH
Q 026036 145 NPDWDLILASDILLYVKQYSNLIKSLSVLLKSYKPKDSQVGHLTKNEQGEGTEGLPWPAFLMSWRRRIGKEDETIFFTSC 224 (244)
Q Consensus 145 ~~~fD~I~~~~~l~~~~~~~~l~~~l~~~~~~lk~gG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 224 (244)
..+||+|.. |+ .....-...++.+...++|||.+++-.+... .+.+ ....+.+.+
T Consensus 180 ~~~~dlv~I-D~----D~Y~~t~~~le~~~p~l~~GGvIv~DD~~~~------------------~w~G--~~~A~~ef~ 234 (257)
T 3tos_A 180 QTVIALAYF-DL----DLYEPTKAVLEAIRPYLTKGSIVAFDELDNP------------------KWPG--ENIAMRKVL 234 (257)
T ss_dssp TCCEEEEEE-CC----CCHHHHHHHHHHHGGGEEEEEEEEESSTTCT------------------TCTH--HHHHHHHHT
T ss_pred CCceEEEEE-cC----cccchHHHHHHHHHHHhCCCcEEEEcCCCCC------------------CChH--HHHHHHHHH
Confidence 346998886 33 1234445778889999999998776532110 0112 246777788
Q ss_pred hhcCCeEEEec
Q 026036 225 ENAGLEVKHLG 235 (244)
Q Consensus 225 ~~~Gf~v~~~~ 235 (244)
.+.|.++....
T Consensus 235 ~~~~~~i~~~p 245 (257)
T 3tos_A 235 GLDHAPLRLLP 245 (257)
T ss_dssp CTTSSCCEECT
T ss_pred hhCCCeEEEcc
Confidence 88888877664
|
| >3me5_A Cytosine-specific methyltransferase; structural genomics, protein structure initiative, NEW YORK structural genomix research consortium; 1.75A {Shigella flexneri 2A} PDB: 3lx6_A | Back alignment and structure |
|---|
Probab=89.73 E-value=0.39 Score=41.87 Aligned_cols=43 Identities=21% Similarity=0.232 Sum_probs=34.2
Q ss_pred CCeEEEeCCCCcHHHHHHHHhCCCeEEEEeCChHHHHHHHHHhH
Q 026036 78 RRRCIELGSGTGALAIFLRKAMNLDITTSDYNDQEIEDNIAYNS 121 (244)
Q Consensus 78 ~~~VLdlG~G~G~~~~~~a~~~~~~v~~~D~~~~~l~~~~~~~~ 121 (244)
..+++||-||.|.+++.+...+..-|.++|+++.+. +..+.|-
T Consensus 88 ~~~viDLFaG~GGlslG~~~aG~~~v~avE~d~~A~-~ty~~N~ 130 (482)
T 3me5_A 88 AFRFIDLFAGIGGIRRGFESIGGQCVFTSEWNKHAV-RTYKANH 130 (482)
T ss_dssp SEEEEEESCTTSHHHHHHHTTTEEEEEEECCCHHHH-HHHHHHS
T ss_pred cceEEEecCCccHHHHHHHHCCCEEEEEEeCCHHHH-HHHHHhc
Confidence 458999999999999988766444589999999876 5555553
|
| >1boo_A Protein (N-4 cytosine-specific methyltransferase PVU II); type II DNA-(cytosine N4) methyltransferase, amino methylation, selenomethionine; HET: SAH; 2.80A {Proteus vulgaris} SCOP: c.66.1.11 | Back alignment and structure |
|---|
Probab=89.66 E-value=0.45 Score=39.13 Aligned_cols=42 Identities=21% Similarity=0.279 Sum_probs=31.4
Q ss_pred CCCCccEEEEcccccCCcC------------hHHHHHHHHHHHHhcCCCCceEee
Q 026036 144 PNPDWDLILASDILLYVKQ------------YSNLIKSLSVLLKSYKPKDSQVGH 186 (244)
Q Consensus 144 ~~~~fD~I~~~~~l~~~~~------------~~~l~~~l~~~~~~lk~gG~~~~~ 186 (244)
.+++||+|++.++. .... ...+...++++.++|+|||.+++.
T Consensus 30 ~~~svDlI~tDPPY-~~~~~~~y~~~~~~~~~~~l~~~l~~~~rvLk~~G~i~i~ 83 (323)
T 1boo_A 30 PEESISLVMTSPPF-ALQRKKEYGNLEQHEYVDWFLSFAKVVNKKLKPDGSFVVD 83 (323)
T ss_dssp CSSCEEEEEECCCC-SSSCSCSSCSCHHHHHHHHHHHHHHHHHHHEEEEEEEEEE
T ss_pred CCCCeeEEEECCCC-CCCcccccCCcCHHHHHHHHHHHHHHHHHHCcCCcEEEEE
Confidence 35689999997775 3321 124668889999999999998876
|
| >2zig_A TTHA0409, putative modification methylase; methyltransferase, S- adenosylmethionine, structural genomics, NPPSFA; 2.10A {Thermus thermophilus} PDB: 2zie_A* 2zif_A | Back alignment and structure |
|---|
Probab=89.60 E-value=0.26 Score=39.97 Aligned_cols=44 Identities=16% Similarity=0.200 Sum_probs=31.2
Q ss_pred CCCCccEEEEcccccCCcC-----------------hHHHHHHHHHHHHhcCCCCceEeec
Q 026036 144 PNPDWDLILASDILLYVKQ-----------------YSNLIKSLSVLLKSYKPKDSQVGHL 187 (244)
Q Consensus 144 ~~~~fD~I~~~~~l~~~~~-----------------~~~l~~~l~~~~~~lk~gG~~~~~~ 187 (244)
++++||+|+++.+.+.... ...+...++++.++|||||.+++.+
T Consensus 37 ~~~s~DlIvtdPPY~~~~~y~~~~~~~~~~~~~~~~l~~l~~~~~~~~rvLk~~G~l~i~~ 97 (297)
T 2zig_A 37 PEASVHLVVTSPPYWTLKRYEDTPGQLGHIEDYEAFLDELDRVWREVFRLLVPGGRLVIVV 97 (297)
T ss_dssp CTTCEEEEEECCCCCCCC-------CCHHHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEEE
T ss_pred CCCceeEEEECCCCCCccccCCChhhhcccccHHHHHHHHHHHHHHHHHHcCCCcEEEEEE
Confidence 3568999999888642211 1123467788999999999988864
|
| >1zsy_A Mitochondrial 2-enoyl thioester reductase; medium-chain dehydrogenase/reductase, oxidoreductase, 2-ENOY thioester reductase; 1.75A {Homo sapiens} PDB: 2vcy_A | Back alignment and structure |
|---|
Probab=89.50 E-value=0.53 Score=39.09 Aligned_cols=35 Identities=20% Similarity=0.218 Sum_probs=26.3
Q ss_pred cCcccCCeEEEeCC--CCcHHHHHHHHhCCCeEEEEe
Q 026036 73 REWIERRRCIELGS--GTGALAIFLRKAMNLDITTSD 107 (244)
Q Consensus 73 ~~~~~~~~VLdlG~--G~G~~~~~~a~~~~~~v~~~D 107 (244)
....+|.+||=+|+ |.|..++.+|+..+++++++.
T Consensus 163 ~~~~~g~~VlV~Ga~G~vG~~aiqlak~~Ga~vi~~~ 199 (357)
T 1zsy_A 163 EQLQPGDSVIQNASNSGVGQAVIQIAAALGLRTINVV 199 (357)
T ss_dssp SCCCTTCEEEESSTTSHHHHHHHHHHHHHTCEEEEEE
T ss_pred hccCCCCEEEEeCCcCHHHHHHHHHHHHcCCEEEEEe
Confidence 45668999999996 467777778877777766554
|
| >1piw_A Hypothetical zinc-type alcohol dehydrogenase- like protein in PRE5-FET4 intergenic...; ADH topology, NADP(H)dependent, oxidoreductase; HET: NAP; 3.00A {Saccharomyces cerevisiae} SCOP: b.35.1.2 c.2.1.1 PDB: 1ps0_A* 1q1n_A | Back alignment and structure |
|---|
Probab=88.09 E-value=0.89 Score=37.77 Aligned_cols=97 Identities=13% Similarity=0.105 Sum_probs=57.3
Q ss_pred cCcccCCeEEEeCCC-CcHHHHHHHHhCCCeEEEEeCChHHHHHHHHHhHHhcCCCCCcceEeeecCCC---CCCCCCCc
Q 026036 73 REWIERRRCIELGSG-TGALAIFLRKAMNLDITTSDYNDQEIEDNIAYNSTTNGITPALPHIKHSWGDA---FPIPNPDW 148 (244)
Q Consensus 73 ~~~~~~~~VLdlG~G-~G~~~~~~a~~~~~~v~~~D~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~f 148 (244)
....+|.+||-+|+| .|..++.+++..+.+|+++|.+++.+ +.+++. +.. .. ++..+. .....+.+
T Consensus 175 ~~~~~g~~VlV~GaG~vG~~~~qlak~~Ga~Vi~~~~~~~~~-~~~~~l----Ga~---~v--~~~~~~~~~~~~~~~~~ 244 (360)
T 1piw_A 175 NGCGPGKKVGIVGLGGIGSMGTLISKAMGAETYVISRSSRKR-EDAMKM----GAD---HY--IATLEEGDWGEKYFDTF 244 (360)
T ss_dssp TTCSTTCEEEEECCSHHHHHHHHHHHHHTCEEEEEESSSTTH-HHHHHH----TCS---EE--EEGGGTSCHHHHSCSCE
T ss_pred cCCCCCCEEEEECCCHHHHHHHHHHHHCCCEEEEEcCCHHHH-HHHHHc----CCC---EE--EcCcCchHHHHHhhcCC
Confidence 456689999999985 46666667776688999999987654 444431 221 01 111111 00001469
Q ss_pred cEEEEcccccCCcChHHHHHHHHHHHHhcCCCCceEee
Q 026036 149 DLILASDILLYVKQYSNLIKSLSVLLKSYKPKDSQVGH 186 (244)
Q Consensus 149 D~I~~~~~l~~~~~~~~l~~~l~~~~~~lk~gG~~~~~ 186 (244)
|+|+-.-.- . . + ..++...+.++++|+++..
T Consensus 245 D~vid~~g~-~--~-~---~~~~~~~~~l~~~G~iv~~ 275 (360)
T 1piw_A 245 DLIVVCASS-L--T-D---IDFNIMPKAMKVGGRIVSI 275 (360)
T ss_dssp EEEEECCSC-S--T-T---CCTTTGGGGEEEEEEEEEC
T ss_pred CEEEECCCC-C--c-H---HHHHHHHHHhcCCCEEEEe
Confidence 998864221 0 0 1 2234467889999988765
|
| >1gu7_A Enoyl-[acyl-carrier-protein] reductase [NADPH, B-specific] 1,mitochondrial; oxidoreductase, thioester reduction, fatty acids; 1.70A {Candida tropicalis} SCOP: b.35.1.2 c.2.1.1 PDB: 1guf_A* 1n9g_B* 1n9g_A* 1gyr_A 1h0k_A | Back alignment and structure |
|---|
Probab=87.47 E-value=0.48 Score=39.38 Aligned_cols=38 Identities=16% Similarity=0.152 Sum_probs=28.7
Q ss_pred cCcccC-CeEEEeCC--CCcHHHHHHHHhCCCeEEEEeCCh
Q 026036 73 REWIER-RRCIELGS--GTGALAIFLRKAMNLDITTSDYND 110 (244)
Q Consensus 73 ~~~~~~-~~VLdlG~--G~G~~~~~~a~~~~~~v~~~D~~~ 110 (244)
....+| .+||=.|+ |.|..++.+|+..+++|+++..+.
T Consensus 162 ~~~~~g~~~VlV~Ga~G~vG~~aiqlak~~Ga~vi~~~~~~ 202 (364)
T 1gu7_A 162 VKLTPGKDWFIQNGGTSAVGKYASQIGKLLNFNSISVIRDR 202 (364)
T ss_dssp SCCCTTTCEEEESCTTSHHHHHHHHHHHHHTCEEEEEECCC
T ss_pred hccCCCCcEEEECCCCcHHHHHHHHHHHHCCCEEEEEecCc
Confidence 356688 99999986 366777777777788988887554
|
| >2uyo_A Hypothetical protein ML2640; putative methyltransferase, transferas; 1.7A {Mycobacterium leprae} SCOP: c.66.1.57 PDB: 2ckd_A 2uyq_A* | Back alignment and structure |
|---|
Probab=87.43 E-value=6.2 Score=32.11 Aligned_cols=106 Identities=12% Similarity=0.054 Sum_probs=62.0
Q ss_pred CeEEEeCCCCcHHHHHHHHhCCCeEEEEeCChHHHHHHHHHhHHhcCC--CCCcceEeeecCCC----C---CCCCCCcc
Q 026036 79 RRCIELGSGTGALAIFLRKAMNLDITTSDYNDQEIEDNIAYNSTTNGI--TPALPHIKHSWGDA----F---PIPNPDWD 149 (244)
Q Consensus 79 ~~VLdlG~G~G~~~~~~a~~~~~~v~~~D~~~~~l~~~~~~~~~~~~~--~~~~~~~~~~~~~~----~---~~~~~~fD 149 (244)
..|++||||.=..+.-+....+.+|+=+|. +..+ +..++.+...+. +.+...+..+..+. + .+.....-
T Consensus 104 ~QvV~LGaGlDTra~Rl~~~~~~~v~evD~-P~vi-~~k~~lL~~~~~~~~~~~~~v~~Dl~d~~~~~l~~~g~d~~~Pt 181 (310)
T 2uyo_A 104 RQFVILASGLDSRAYRLDWPTGTTVYEIDQ-PKVL-AYKSTTLAEHGVTPTADRREVPIDLRQDWPPALRSAGFDPSART 181 (310)
T ss_dssp CEEEEETCTTCCHHHHSCCCTTCEEEEEEC-HHHH-HHHHHHHHHTTCCCSSEEEEEECCTTSCHHHHHHHTTCCTTSCE
T ss_pred CeEEEeCCCCCchhhhccCCCCcEEEEcCC-HHHH-HHHHHHHHhcCCCCCCCeEEEecchHhhHHHHHHhccCCCCCCE
Confidence 479999999776654443111467888884 5554 555555543222 22233444443331 0 01112345
Q ss_pred EEEEcccccCCcChHHHHHHHHHHHHhcCCCCceEeec
Q 026036 150 LILASDILLYVKQYSNLIKSLSVLLKSYKPKDSQVGHL 187 (244)
Q Consensus 150 ~I~~~~~l~~~~~~~~l~~~l~~~~~~lk~gG~~~~~~ 187 (244)
++++..++++ ...++...+++.+...+.||+.+++..
T Consensus 182 ~~i~Egvl~Y-l~~~~~~~ll~~l~~~~~~gs~l~~d~ 218 (310)
T 2uyo_A 182 AWLAEGLLMY-LPATAQDGLFTEIGGLSAVGSRIAVET 218 (310)
T ss_dssp EEEECSCGGG-SCHHHHHHHHHHHHHTCCTTCEEEEEC
T ss_pred EEEEechHhh-CCHHHHHHHHHHHHHhCCCCeEEEEEe
Confidence 6777777744 344567788899988888888777663
|
| >2eih_A Alcohol dehydrogenase; zinc ION binding protein, structural genomics, NPPSFA, natio project on protein structural and functional analyses; 2.30A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=86.95 E-value=2.5 Score=34.74 Aligned_cols=94 Identities=7% Similarity=0.022 Sum_probs=60.1
Q ss_pred cCcccCCeEEEeCC--CCcHHHHHHHHhCCCeEEEEeCChHHHHHHHHHhHHhcCCCCCcceEeeecCCCC------C-C
Q 026036 73 REWIERRRCIELGS--GTGALAIFLRKAMNLDITTSDYNDQEIEDNIAYNSTTNGITPALPHIKHSWGDAF------P-I 143 (244)
Q Consensus 73 ~~~~~~~~VLdlG~--G~G~~~~~~a~~~~~~v~~~D~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~-~ 143 (244)
....++.+||-.|+ |.|.....+++..+.+|+++|.+++.+ +.++.. +.. . .++..+.. . .
T Consensus 162 ~~~~~g~~vlV~Gasg~iG~~~~~~a~~~G~~Vi~~~~~~~~~-~~~~~~----ga~----~-~~d~~~~~~~~~~~~~~ 231 (343)
T 2eih_A 162 LGVRPGDDVLVMAAGSGVSVAAIQIAKLFGARVIATAGSEDKL-RRAKAL----GAD----E-TVNYTHPDWPKEVRRLT 231 (343)
T ss_dssp SCCCTTCEEEECSTTSTTHHHHHHHHHHTTCEEEEEESSHHHH-HHHHHH----TCS----E-EEETTSTTHHHHHHHHT
T ss_pred cCCCCCCEEEEECCCchHHHHHHHHHHHCCCEEEEEeCCHHHH-HHHHhc----CCC----E-EEcCCcccHHHHHHHHh
Confidence 35668899999998 577777777777788999999998765 444321 221 1 12222110 0 0
Q ss_pred CCCCccEEEEcccccCCcChHHHHHHHHHHHHhcCCCCceEee
Q 026036 144 PNPDWDLILASDILLYVKQYSNLIKSLSVLLKSYKPKDSQVGH 186 (244)
Q Consensus 144 ~~~~fD~I~~~~~l~~~~~~~~l~~~l~~~~~~lk~gG~~~~~ 186 (244)
....+|+|+.+-. . ..++.+.+.++++|++++.
T Consensus 232 ~~~~~d~vi~~~g-------~---~~~~~~~~~l~~~G~~v~~ 264 (343)
T 2eih_A 232 GGKGADKVVDHTG-------A---LYFEGVIKATANGGRIAIA 264 (343)
T ss_dssp TTTCEEEEEESSC-------S---SSHHHHHHHEEEEEEEEES
T ss_pred CCCCceEEEECCC-------H---HHHHHHHHhhccCCEEEEE
Confidence 1236999886432 1 2455677889999988765
|
| >2km1_A Protein DRE2; yeast, antiapoptotic, protein binding; NMR {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=86.94 E-value=1.9 Score=30.53 Aligned_cols=42 Identities=21% Similarity=0.257 Sum_probs=28.3
Q ss_pred CCCCCCCccEEEEccccc-CCcChHHHHHHHHHHHHhcCCCCceE
Q 026036 141 FPIPNPDWDLILASDILL-YVKQYSNLIKSLSVLLKSYKPKDSQV 184 (244)
Q Consensus 141 ~~~~~~~fD~I~~~~~l~-~~~~~~~l~~~l~~~~~~lk~gG~~~ 184 (244)
...+...||.|+....-= .....+ .+.+..+.+.|||||+|.
T Consensus 53 VsLp~stYD~V~~lt~~~~~~~~l~--r~li~~l~~aLkpgG~L~ 95 (136)
T 2km1_A 53 ITLENAKYETVHYLTPEAQTDIKFP--KKLISVLADSLKPNGSLI 95 (136)
T ss_dssp CCCCSSSCCSEEEECCCSSCSCCCC--HHHHHHHHTTCCTTCCEE
T ss_pred ccCCcccccEEEEecCCccchhhcC--HHHHHHHHHHhCCCCEEE
Confidence 345667899888744320 112222 488999999999999765
|
| >3pi7_A NADH oxidoreductase; groes-like fold, NAD(P)-binding rossmann fold, structural GE joint center for structural genomics, JCSG; HET: MSE; 1.71A {Mesorhizobium loti} | Back alignment and structure |
|---|
Probab=86.75 E-value=2.1 Score=35.31 Aligned_cols=89 Identities=12% Similarity=0.052 Sum_probs=49.5
Q ss_pred ccC-CeEEEeCCCCc---HHHHHHHHhCCCeEEEEeCChHHHHHHHHHhHHhcCCCCCcceEeeecCCCCCC--------
Q 026036 76 IER-RRCIELGSGTG---ALAIFLRKAMNLDITTSDYNDQEIEDNIAYNSTTNGITPALPHIKHSWGDAFPI-------- 143 (244)
Q Consensus 76 ~~~-~~VLdlG~G~G---~~~~~~a~~~~~~v~~~D~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------- 143 (244)
.++ .+|| +-.|+| ..+..+++..+++|+++|.+++.+ +.+++. +. ...++..+. ..
T Consensus 162 ~~g~~~vl-i~gg~g~vG~~a~qla~~~Ga~Vi~~~~~~~~~-~~~~~~----Ga-----~~~~~~~~~-~~~~~v~~~~ 229 (349)
T 3pi7_A 162 QEGEKAFV-MTAGASQLCKLIIGLAKEEGFRPIVTVRRDEQI-ALLKDI----GA-----AHVLNEKAP-DFEATLREVM 229 (349)
T ss_dssp HHCCSEEE-ESSTTSHHHHHHHHHHHHHTCEEEEEESCGGGH-HHHHHH----TC-----SEEEETTST-THHHHHHHHH
T ss_pred hCCCCEEE-EeCCCcHHHHHHHHHHHHCCCEEEEEeCCHHHH-HHHHHc----CC-----CEEEECCcH-HHHHHHHHHh
Confidence 455 4555 533444 444555555588999999988755 444421 22 011222111 10
Q ss_pred CCCCccEEEEcccccCCcChHHHHHHHHHHHHhcCCCCceEee
Q 026036 144 PNPDWDLILASDILLYVKQYSNLIKSLSVLLKSYKPKDSQVGH 186 (244)
Q Consensus 144 ~~~~fD~I~~~~~l~~~~~~~~l~~~l~~~~~~lk~gG~~~~~ 186 (244)
....+|+|+-+-. . ..+..+.+.++++|++++.
T Consensus 230 ~~~g~D~vid~~g------~----~~~~~~~~~l~~~G~iv~~ 262 (349)
T 3pi7_A 230 KAEQPRIFLDAVT------G----PLASAIFNAMPKRARWIIY 262 (349)
T ss_dssp HHHCCCEEEESSC------H----HHHHHHHHHSCTTCEEEEC
T ss_pred cCCCCcEEEECCC------C----hhHHHHHhhhcCCCEEEEE
Confidence 0136898875321 1 2336678899999998776
|
| >1vj0_A Alcohol dehydrogenase, zinc-containing; TM0436, structural G JCSG, PSI, protein structure initiative, joint center for S genomics; 2.00A {Thermotoga maritima} SCOP: b.35.1.2 c.2.1.1 | Back alignment and structure |
|---|
Probab=86.37 E-value=2.4 Score=35.44 Aligned_cols=97 Identities=11% Similarity=0.077 Sum_probs=59.8
Q ss_pred hccC-cccCCeEEEeCCC-CcHHHHHHHHhCC-CeEEEEeCChHHHHHHHHHhHHhcCCCCCcceEeeecC--------C
Q 026036 71 HHRE-WIERRRCIELGSG-TGALAIFLRKAMN-LDITTSDYNDQEIEDNIAYNSTTNGITPALPHIKHSWG--------D 139 (244)
Q Consensus 71 ~~~~-~~~~~~VLdlG~G-~G~~~~~~a~~~~-~~v~~~D~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~--------~ 139 (244)
.... ..+|.+||-+|+| .|..++.+|+..+ .+|+++|.+++.+ +.+++ .+.. . .++.. +
T Consensus 188 ~~~~~~~~g~~VlV~GaG~vG~~aiqlak~~Ga~~Vi~~~~~~~~~-~~~~~----lGa~----~-vi~~~~~~~~~~~~ 257 (380)
T 1vj0_A 188 DEYPESFAGKTVVIQGAGPLGLFGVVIARSLGAENVIVIAGSPNRL-KLAEE----IGAD----L-TLNRRETSVEERRK 257 (380)
T ss_dssp HTCSSCCBTCEEEEECCSHHHHHHHHHHHHTTBSEEEEEESCHHHH-HHHHH----TTCS----E-EEETTTSCHHHHHH
T ss_pred HhcCCCCCCCEEEEECcCHHHHHHHHHHHHcCCceEEEEcCCHHHH-HHHHH----cCCc----E-EEeccccCcchHHH
Confidence 3345 6789999999965 5666777777777 6999999998765 54442 2221 0 11111 0
Q ss_pred CC-CC-CCCCccEEEEcccccCCcChHHHHHHHHHHHHhcCCCCceEee
Q 026036 140 AF-PI-PNPDWDLILASDILLYVKQYSNLIKSLSVLLKSYKPKDSQVGH 186 (244)
Q Consensus 140 ~~-~~-~~~~fD~I~~~~~l~~~~~~~~l~~~l~~~~~~lk~gG~~~~~ 186 (244)
.+ .. ....+|+|+-+-. .+ ..++...+.++++|++++.
T Consensus 258 ~v~~~~~g~g~Dvvid~~g------~~---~~~~~~~~~l~~~G~iv~~ 297 (380)
T 1vj0_A 258 AIMDITHGRGADFILEATG------DS---RALLEGSELLRRGGFYSVA 297 (380)
T ss_dssp HHHHHTTTSCEEEEEECSS------CT---THHHHHHHHEEEEEEEEEC
T ss_pred HHHHHhCCCCCcEEEECCC------CH---HHHHHHHHHHhcCCEEEEE
Confidence 00 00 1236999885322 11 3456678899999998765
|
| >3jv7_A ADH-A; dehydrogenase, nucleotide binding, rossmann-fold, oxidoreduc; HET: NAD; 2.00A {Rhodococcus ruber} PDB: 2xaa_A* | Back alignment and structure |
|---|
Probab=86.08 E-value=1.5 Score=36.11 Aligned_cols=94 Identities=10% Similarity=0.052 Sum_probs=59.6
Q ss_pred CcccCCeEEEeCCCC-cHHHHHHHHhC-CCeEEEEeCChHHHHHHHHHhHHhcCCCCCcceEeeecCCCCC-----C-CC
Q 026036 74 EWIERRRCIELGSGT-GALAIFLRKAM-NLDITTSDYNDQEIEDNIAYNSTTNGITPALPHIKHSWGDAFP-----I-PN 145 (244)
Q Consensus 74 ~~~~~~~VLdlG~G~-G~~~~~~a~~~-~~~v~~~D~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~-~~ 145 (244)
...+|.+||=+|+|. |..++.+++.. +.+|+++|.+++.+ +.+++ .+.. . .++..+... . ..
T Consensus 168 ~~~~g~~vlv~GaG~vG~~a~qla~~~g~~~Vi~~~~~~~~~-~~~~~----lGa~----~-~i~~~~~~~~~v~~~t~g 237 (345)
T 3jv7_A 168 LLGPGSTAVVIGVGGLGHVGIQILRAVSAARVIAVDLDDDRL-ALARE----VGAD----A-AVKSGAGAADAIRELTGG 237 (345)
T ss_dssp GCCTTCEEEEECCSHHHHHHHHHHHHHCCCEEEEEESCHHHH-HHHHH----TTCS----E-EEECSTTHHHHHHHHHGG
T ss_pred CCCCCCEEEEECCCHHHHHHHHHHHHcCCCEEEEEcCCHHHH-HHHHH----cCCC----E-EEcCCCcHHHHHHHHhCC
Confidence 566889999999863 67777777665 78999999998765 54443 2221 1 111111100 0 11
Q ss_pred CCccEEEEcccccCCcChHHHHHHHHHHHHhcCCCCceEee
Q 026036 146 PDWDLILASDILLYVKQYSNLIKSLSVLLKSYKPKDSQVGH 186 (244)
Q Consensus 146 ~~fD~I~~~~~l~~~~~~~~l~~~l~~~~~~lk~gG~~~~~ 186 (244)
..+|+|+-.-. .+ .+++...+.++++|++++.
T Consensus 238 ~g~d~v~d~~G------~~---~~~~~~~~~l~~~G~iv~~ 269 (345)
T 3jv7_A 238 QGATAVFDFVG------AQ---STIDTAQQVVAVDGHISVV 269 (345)
T ss_dssp GCEEEEEESSC------CH---HHHHHHHHHEEEEEEEEEC
T ss_pred CCCeEEEECCC------CH---HHHHHHHHHHhcCCEEEEE
Confidence 26898875321 12 4677788999999998776
|
| >4dkj_A Cytosine-specific methyltransferase; CG-specificity, DNA intercalation, CPG sequence, cytosine C5 methylation; HET: DNA C37 5CM SAH; 2.15A {Mycoplasma penetrans} | Back alignment and structure |
|---|
Probab=85.52 E-value=0.83 Score=38.85 Aligned_cols=44 Identities=11% Similarity=-0.026 Sum_probs=33.9
Q ss_pred cCCeEEEeCCCCcHHHHHHHHhC--CCe----EEEEeCChHHHHHHHHHhH
Q 026036 77 ERRRCIELGSGTGALAIFLRKAM--NLD----ITTSDYNDQEIEDNIAYNS 121 (244)
Q Consensus 77 ~~~~VLdlG~G~G~~~~~~a~~~--~~~----v~~~D~~~~~l~~~~~~~~ 121 (244)
+..+|+||.||.|.....+.+.+ ..- |.++|+++.++ ...+.|-
T Consensus 9 ~~lrvldLFsGiGG~~~Gl~~aG~~~~~~~~~v~avEid~~A~-~ty~~n~ 58 (403)
T 4dkj_A 9 KVIKVFEAFAGIGSQFKALKNIARSKNWEIQHSGMVEWFVDAI-VSYVAIH 58 (403)
T ss_dssp EEEEEEEETCTTCHHHHHHHHHHHHHTEEEEEEEEECCBHHHH-HHHHHHH
T ss_pred ccceEEEEecCcCHHHHHHHHhCCccccceeeEEEEecCHHHH-HHHHHHc
Confidence 34699999999999998887665 233 88899999876 5555554
|
| >1g60_A Adenine-specific methyltransferase MBOIIA; structural genomics, DNA methylation, S- adenosylmethionine, PSI, protein structure initiative; HET: SAM; 1.74A {Moraxella bovis} SCOP: c.66.1.11 | Back alignment and structure |
|---|
Probab=85.51 E-value=1.1 Score=35.46 Aligned_cols=41 Identities=10% Similarity=0.005 Sum_probs=28.6
Q ss_pred CCCccEEEEcccccCCc-C-------h----HHHHHHHHHHHHhcCCCCceEee
Q 026036 145 NPDWDLILASDILLYVK-Q-------Y----SNLIKSLSVLLKSYKPKDSQVGH 186 (244)
Q Consensus 145 ~~~fD~I~~~~~l~~~~-~-------~----~~l~~~l~~~~~~lk~gG~~~~~ 186 (244)
+++||+|++.++. ... . . .-+...++++.++|+|+|.+++.
T Consensus 21 ~~~vdlI~~DPPY-~~~~~~~d~~~~~~~y~~~~~~~l~~~~~~Lk~~g~i~v~ 73 (260)
T 1g60_A 21 NKSVQLAVIDPPY-NLSKADWDSFDSHNEFLAFTYRWIDKVLDKLDKDGSLYIF 73 (260)
T ss_dssp TTCEEEEEECCCC-SSCSSGGGCCSSHHHHHHHHHHHHHHHHHHEEEEEEEEEE
T ss_pred ccccCEEEECCCC-CCCcccccccCCHHHHHHHHHHHHHHHHHHhcCCeEEEEE
Confidence 3579999986664 432 1 1 23457778889999999987765
|
| >1h2b_A Alcohol dehydrogenase; oxidoreductase, archaea, hyperthermophIle, zinc; HET: OCA NAJ; 1.62A {Aeropyrum pernix} SCOP: b.35.1.2 c.2.1.1 | Back alignment and structure |
|---|
Probab=85.40 E-value=2.3 Score=35.24 Aligned_cols=45 Identities=20% Similarity=0.282 Sum_probs=33.7
Q ss_pred cCcccCCeEEEeCCC-CcHHHHHHHHhC-CCeEEEEeCChHHHHHHHH
Q 026036 73 REWIERRRCIELGSG-TGALAIFLRKAM-NLDITTSDYNDQEIEDNIA 118 (244)
Q Consensus 73 ~~~~~~~~VLdlG~G-~G~~~~~~a~~~-~~~v~~~D~~~~~l~~~~~ 118 (244)
....+|.+||=+|+| .|..++.+|+.. +++|+++|.+++.+ +.++
T Consensus 182 ~~~~~g~~VlV~GaG~vG~~avqlak~~~Ga~Vi~~~~~~~~~-~~~~ 228 (359)
T 1h2b_A 182 RTLYPGAYVAIVGVGGLGHIAVQLLKVMTPATVIALDVKEEKL-KLAE 228 (359)
T ss_dssp TTCCTTCEEEEECCSHHHHHHHHHHHHHCCCEEEEEESSHHHH-HHHH
T ss_pred cCCCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEeCCHHHH-HHHH
Confidence 456688999999985 455566677776 88999999998765 4443
|
| >3dmg_A Probable ribosomal RNA small subunit methyltransf; monomethyltranserase, 16S rRNA methyltransferase, N2 G1207 methyltransferase; HET: SAH; 1.55A {Thermus thermophilus} PDB: 3dmf_A* 3dmh_A* 2zul_A* 2zwv_A* | Back alignment and structure |
|---|
Probab=84.71 E-value=1.9 Score=36.27 Aligned_cols=106 Identities=13% Similarity=0.130 Sum_probs=62.7
Q ss_pred chHHHHHHHHhhccCcccCCeEEEeCCCCcHHHHHHHHhCCCeEEEEeCChHHHHHHHHHhHHhcCCCCCcceEeeecCC
Q 026036 60 PGTFSFAEWLMHHREWIERRRCIELGSGTGALAIFLRKAMNLDITTSDYNDQEIEDNIAYNSTTNGITPALPHIKHSWGD 139 (244)
Q Consensus 60 ~~~~~l~~~~~~~~~~~~~~~VLdlG~G~G~~~~~~a~~~~~~v~~~D~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 139 (244)
|+.+.|.+. ... .+.+||.++-+-|.++..++ ...+++.+.-+.-.. .. ...|++.. .....|
T Consensus 33 ~~~~~l~~~----~~~-~~~~~l~~n~~~g~~~~~~~--~~~~~~~~~~~~~~~-~~----l~~~~~~~---~~~~~~-- 95 (381)
T 3dmg_A 33 PVHDLLQKT----VEP-FGERALDLNPGVGWGSLPLE--GRMAVERLETSRAAF-RC----LTASGLQA---RLALPW-- 95 (381)
T ss_dssp HHHHHHHTT----CCC-CSSEEEESSCTTSTTTGGGB--TTBEEEEEECBHHHH-HH----HHHTTCCC---EECCGG--
T ss_pred hHHHHHHHH----HHH-hCCcEEEecCCCCccccccC--CCCceEEEeCcHHHH-HH----HHHcCCCc---cccCCc--
Confidence 555555444 333 33599999999998765553 245677765554332 33 44455521 111112
Q ss_pred CCCCCCCCccEEEEcccccCCcChHHHHHHHHHHHHhcCCCCceEee
Q 026036 140 AFPIPNPDWDLILASDILLYVKQYSNLIKSLSVLLKSYKPKDSQVGH 186 (244)
Q Consensus 140 ~~~~~~~~fD~I~~~~~l~~~~~~~~l~~~l~~~~~~lk~gG~~~~~ 186 (244)
......||+|+.--+ .......+...|.++.+.|+|||.+++.
T Consensus 96 --~~~~~~~d~v~~~~P--k~k~~~~~~~~l~~~~~~l~~g~~i~~~ 138 (381)
T 3dmg_A 96 --EAAAGAYDLVVLALP--AGRGTAYVQASLVAAARALRMGGRLYLA 138 (381)
T ss_dssp --GSCTTCEEEEEEECC--GGGCHHHHHHHHHHHHHHEEEEEEEEEE
T ss_pred --cCCcCCCCEEEEECC--cchhHHHHHHHHHHHHHhCCCCCEEEEE
Confidence 123457999987222 1112234668888999999999998877
|
| >2gdz_A NAD+-dependent 15-hydroxyprostaglandin dehydrogen; dehydrogenase, structural genomics, SH dehydrogenase/reductase, inflammation; HET: NAD; 1.65A {Homo sapiens} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=84.44 E-value=4.4 Score=31.74 Aligned_cols=80 Identities=9% Similarity=0.038 Sum_probs=41.9
Q ss_pred cCCeEEEeCCCCcHHHHHHHHhC---CCeEEEEeCChHHHHHHHHHhHHhcCCCCCcceEeeecCCCCCC---------C
Q 026036 77 ERRRCIELGSGTGALAIFLRKAM---NLDITTSDYNDQEIEDNIAYNSTTNGITPALPHIKHSWGDAFPI---------P 144 (244)
Q Consensus 77 ~~~~VLdlG~G~G~~~~~~a~~~---~~~v~~~D~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------~ 144 (244)
.+++||=.|++ |.+|..+++.. +.+|++++.+++.. +.....+.......++..+..|..+.... .
T Consensus 6 ~~k~vlVTGas-~gIG~~ia~~l~~~G~~V~~~~r~~~~~-~~~~~~l~~~~~~~~~~~~~~D~~~~~~v~~~~~~~~~~ 83 (267)
T 2gdz_A 6 NGKVALVTGAA-QGIGRAFAEALLLKGAKVALVDWNLEAG-VQCKAALHEQFEPQKTLFIQCDVADQQQLRDTFRKVVDH 83 (267)
T ss_dssp TTCEEEEETTT-SHHHHHHHHHHHHTTCEEEEEESCHHHH-HHHHHHHTTTSCGGGEEEEECCTTSHHHHHHHHHHHHHH
T ss_pred CCCEEEEECCC-CcHHHHHHHHHHHCCCEEEEEECCHHHH-HHHHHHHHhhcCCCceEEEecCCCCHHHHHHHHHHHHHH
Confidence 56678877764 55555554433 78999999987654 22222221110011223344444432110 0
Q ss_pred CCCccEEEEccccc
Q 026036 145 NPDWDLILASDILL 158 (244)
Q Consensus 145 ~~~fD~I~~~~~l~ 158 (244)
.++.|+++.+-...
T Consensus 84 ~g~id~lv~~Ag~~ 97 (267)
T 2gdz_A 84 FGRLDILVNNAGVN 97 (267)
T ss_dssp HSCCCEEEECCCCC
T ss_pred cCCCCEEEECCCCC
Confidence 13579999877653
|
| >3o26_A Salutaridine reductase; short chain dehydrogenase/reductases, oxidoreductase; HET: NDP; 1.91A {Papaver somniferum} SCOP: c.2.1.0 | Back alignment and structure |
|---|
Probab=84.24 E-value=4.4 Score=32.23 Aligned_cols=80 Identities=8% Similarity=0.101 Sum_probs=44.5
Q ss_pred ccCCeEEEeCCCCcHHHHHHHHhC---CCeEEEEeCChHHHHHHHHHhHHhcCCCCCcceEeeecCCC-CCC--------
Q 026036 76 IERRRCIELGSGTGALAIFLRKAM---NLDITTSDYNDQEIEDNIAYNSTTNGITPALPHIKHSWGDA-FPI-------- 143 (244)
Q Consensus 76 ~~~~~VLdlG~G~G~~~~~~a~~~---~~~v~~~D~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~-------- 143 (244)
.++++||=.|++ |.+|..+++.. +.+|++++.+...+.+.++ .+...+ ..++..+..|..+. ...
T Consensus 10 ~~~k~vlITGas-~GIG~~~a~~L~~~G~~V~~~~r~~~~~~~~~~-~l~~~~-~~~~~~~~~Dl~~~~~~v~~~~~~~~ 86 (311)
T 3o26_A 10 TKRRCAVVTGGN-KGIGFEICKQLSSNGIMVVLTCRDVTKGHEAVE-KLKNSN-HENVVFHQLDVTDPIATMSSLADFIK 86 (311)
T ss_dssp --CCEEEESSCS-SHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHH-HHHTTT-CCSEEEEECCTTSCHHHHHHHHHHHH
T ss_pred CCCcEEEEecCC-chHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHH-HHHhcC-CCceEEEEccCCCcHHHHHHHHHHHH
Confidence 356678877765 44555554443 7899999999876533332 222221 12344555555543 110
Q ss_pred -CCCCccEEEEccccc
Q 026036 144 -PNPDWDLILASDILL 158 (244)
Q Consensus 144 -~~~~fD~I~~~~~l~ 158 (244)
..++.|++|.+..+.
T Consensus 87 ~~~g~iD~lv~nAg~~ 102 (311)
T 3o26_A 87 THFGKLDILVNNAGVA 102 (311)
T ss_dssp HHHSSCCEEEECCCCC
T ss_pred HhCCCCCEEEECCccc
Confidence 014689999887763
|
| >3ijr_A Oxidoreductase, short chain dehydrogenase/reducta; structural genomics, infectious D center for structural genomics of infectious diseases; HET: NAD; 2.05A {Bacillus anthracis str} PDB: 3i3o_A* | Back alignment and structure |
|---|
Probab=83.74 E-value=6.5 Score=31.33 Aligned_cols=108 Identities=10% Similarity=0.139 Sum_probs=58.1
Q ss_pred ccCCeEEEeCCCCcHHHHHHHHhC---CCeEEEEeCChHHHHHHHHHhHHhcCCCCCcceEeeecCCCCCC---------
Q 026036 76 IERRRCIELGSGTGALAIFLRKAM---NLDITTSDYNDQEIEDNIAYNSTTNGITPALPHIKHSWGDAFPI--------- 143 (244)
Q Consensus 76 ~~~~~VLdlG~G~G~~~~~~a~~~---~~~v~~~D~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------- 143 (244)
.++++||=.|++.| ++..+++.+ +.+|+.+|.+.....+.........+ .++..+..|..+....
T Consensus 45 l~gk~vlVTGas~G-IG~aia~~la~~G~~V~~~~r~~~~~~~~~~~~~~~~~--~~~~~~~~Dv~d~~~v~~~~~~~~~ 121 (291)
T 3ijr_A 45 LKGKNVLITGGDSG-IGRAVSIAFAKEGANIAIAYLDEEGDANETKQYVEKEG--VKCVLLPGDLSDEQHCKDIVQETVR 121 (291)
T ss_dssp TTTCEEEEETTTSH-HHHHHHHHHHHTTCEEEEEESSCHHHHHHHHHHHHTTT--CCEEEEESCTTSHHHHHHHHHHHHH
T ss_pred CCCCEEEEeCCCcH-HHHHHHHHHHHCCCEEEEEeCCchHHHHHHHHHHHhcC--CcEEEEECCCCCHHHHHHHHHHHHH
Confidence 46778888886555 454444433 78999999886532233333333222 2334444454432110
Q ss_pred CCCCccEEEEcccccCC-c-----ChHHH-----------HHHHHHHHHhcCCCCceEee
Q 026036 144 PNPDWDLILASDILLYV-K-----QYSNL-----------IKSLSVLLKSYKPKDSQVGH 186 (244)
Q Consensus 144 ~~~~fD~I~~~~~l~~~-~-----~~~~l-----------~~~l~~~~~~lk~gG~~~~~ 186 (244)
..++.|+++.+...... . ..+++ ...++.+.+.++.+|+++.+
T Consensus 122 ~~g~iD~lvnnAg~~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~~~~~g~iv~i 181 (291)
T 3ijr_A 122 QLGSLNILVNNVAQQYPQQGLEYITAEQLEKTFRINIFSYFHVTKAALSHLKQGDVIINT 181 (291)
T ss_dssp HHSSCCEEEECCCCCCCCSSGGGCCHHHHHHHHHHHTHHHHHHHHHHHTTCCTTCEEEEE
T ss_pred HcCCCCEEEECCCCcCCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHhhCCEEEEE
Confidence 11368998887544221 1 11222 23456666777788877665
|
| >2pjd_A Ribosomal RNA small subunit methyltransferase C; gene duplication, RNA modification, SAM binding; 2.10A {Escherichia coli} | Back alignment and structure |
|---|
Probab=83.63 E-value=6.3 Score=32.31 Aligned_cols=102 Identities=15% Similarity=0.067 Sum_probs=60.0
Q ss_pred HHHhhccCcccCCeEEEeCCCCcHHHHHHHHhCCCeEEEEeCChHHHHHHHHHhHHhcCCCCCcceEeeecCCCCCCC-C
Q 026036 67 EWLMHHREWIERRRCIELGSGTGALAIFLRKAMNLDITTSDYNDQEIEDNIAYNSTTNGITPALPHIKHSWGDAFPIP-N 145 (244)
Q Consensus 67 ~~~~~~~~~~~~~~VLdlG~G~G~~~~~~a~~~~~~v~~~D~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~ 145 (244)
++++++.....+.+||-+|-..|.+...++ ..+++..--+-... ...+.|. +. .+.+ +...+.. .
T Consensus 9 ~~l~~~~~~~~~~~~l~~~~~~~~~~~~l~---~~~~~~~~~~~~~~-~~~~~~~---~~-----~~~~--~~~~~~~~~ 74 (343)
T 2pjd_A 9 EVLLRHSDDFEQSRILFAGDLQDDLPARLD---TAASRAHTQQFHHW-QVLSRQM---GD-----NARF--SLVATADDV 74 (343)
T ss_dssp HHHHTTHHHHTTCEEEEEECCCSSHHHHSC---CSEEEEEESBHHHH-HHHHHHH---GG-----GEEE--CSSCCHHHH
T ss_pred HHHHHhHHHhCCCeEEEEcCCCChhhhhhh---hCCCEEEECCHHHH-HHHHhhc---CC-----ceEe--ccCCCcccc
Confidence 344444444566789999999998766553 23444433222222 3333332 11 1111 1122211 1
Q ss_pred CCccEEEEcccccCCcChHHHHHHHHHHHHhcCCCCceEee
Q 026036 146 PDWDLILASDILLYVKQYSNLIKSLSVLLKSYKPKDSQVGH 186 (244)
Q Consensus 146 ~~fD~I~~~~~l~~~~~~~~l~~~l~~~~~~lk~gG~~~~~ 186 (244)
..||+|+. |.......+...+..+.+.+.|++.+++.
T Consensus 75 ~~~~~~~~----~~pk~~~~~~~~l~~~~~~~~~~~~~~~~ 111 (343)
T 2pjd_A 75 ADCDTLIY----YWPKNKPEAQFQLMNLLSLLPVGTDIFVV 111 (343)
T ss_dssp TTCSEEEE----ECCSSHHHHHHHHHHHHTTSCTTCEEEEE
T ss_pred CCCCEEEE----ECCCChHHHHHHHHHHHHhCCCCCEEEEE
Confidence 35898887 45566777788889999999999988776
|
| >3gqv_A Enoyl reductase; medium-chain reductase (MDR superfamily), rossmann fold, NAD binding, oxidoreductase; HET: NAP; 1.74A {Aspergillus terreus} PDB: 3b6z_A* 3b70_A* | Back alignment and structure |
|---|
Probab=83.47 E-value=0.98 Score=37.72 Aligned_cols=91 Identities=8% Similarity=0.057 Sum_probs=55.6
Q ss_pred ccCCeEEEeCCC--CcHHHHHHHHhCCCeEEEEeCChHHHHHHHHHhHHhcCCCCCcceEeeecCCCC------CCCCCC
Q 026036 76 IERRRCIELGSG--TGALAIFLRKAMNLDITTSDYNDQEIEDNIAYNSTTNGITPALPHIKHSWGDAF------PIPNPD 147 (244)
Q Consensus 76 ~~~~~VLdlG~G--~G~~~~~~a~~~~~~v~~~D~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~ 147 (244)
.+|.+||=+|++ .|..++.+++..+++|+++. +++.+ +.+++ .+.. ..++..+.. ....+.
T Consensus 163 ~~g~~VlV~Ga~G~vG~~a~qla~~~Ga~Vi~~~-~~~~~-~~~~~----lGa~-----~vi~~~~~~~~~~v~~~t~g~ 231 (371)
T 3gqv_A 163 SKPVYVLVYGGSTATATVTMQMLRLSGYIPIATC-SPHNF-DLAKS----RGAE-----EVFDYRAPNLAQTIRTYTKNN 231 (371)
T ss_dssp SSCCEEEEESTTSHHHHHHHHHHHHTTCEEEEEE-CGGGH-HHHHH----TTCS-----EEEETTSTTHHHHHHHHTTTC
T ss_pred CCCcEEEEECCCcHHHHHHHHHHHHCCCEEEEEe-CHHHH-HHHHH----cCCc-----EEEECCCchHHHHHHHHccCC
Confidence 678899999983 77888888888888999985 66544 44432 2221 112221110 011235
Q ss_pred ccEEEEcccccCCcChHHHHHHHHHHHHhc-CCCCceEee
Q 026036 148 WDLILASDILLYVKQYSNLIKSLSVLLKSY-KPKDSQVGH 186 (244)
Q Consensus 148 fD~I~~~~~l~~~~~~~~l~~~l~~~~~~l-k~gG~~~~~ 186 (244)
+|+|+- +. . .+ .++....+.+ +++|+++..
T Consensus 232 ~d~v~d--~~---g-~~---~~~~~~~~~l~~~~G~iv~~ 262 (371)
T 3gqv_A 232 LRYALD--CI---T-NV---ESTTFCFAAIGRAGGHYVSL 262 (371)
T ss_dssp CCEEEE--SS---C-SH---HHHHHHHHHSCTTCEEEEES
T ss_pred ccEEEE--CC---C-ch---HHHHHHHHHhhcCCCEEEEE
Confidence 898875 32 1 12 4566677888 699998765
|
| >3swr_A DNA (cytosine-5)-methyltransferase 1; epigenetics, DNA methyltransferase fold, maintenance methyla transferase; HET: DNA SFG MES; 2.49A {Homo sapiens} PDB: 3pta_A* 3pt6_A* 3pt9_A* 4da4_A* | Back alignment and structure |
|---|
Probab=82.28 E-value=1.9 Score=40.96 Aligned_cols=43 Identities=19% Similarity=0.162 Sum_probs=34.0
Q ss_pred cCCeEEEeCCCCcHHHHHHHHhCC-CeEEEEeCChHHHHHHHHHh
Q 026036 77 ERRRCIELGSGTGALAIFLRKAMN-LDITTSDYNDQEIEDNIAYN 120 (244)
Q Consensus 77 ~~~~VLdlG~G~G~~~~~~a~~~~-~~v~~~D~~~~~l~~~~~~~ 120 (244)
...+++||-||.|.+++.+.+.+- ..|.++|+++.+. +..+.|
T Consensus 539 ~~l~~iDLFaG~GGlslGl~~AG~~~vv~avEid~~A~-~ty~~N 582 (1002)
T 3swr_A 539 PKLRTLDVFSGCGGLSEGFHQAGISDTLWAIEMWDPAA-QAFRLN 582 (1002)
T ss_dssp CCEEEEEESCTTSHHHHHHHHHTSEEEEEEECSSHHHH-HHHHHH
T ss_pred CCCeEEEeccCccHHHHHHHHCCCCceEEEEECCHHHH-HHHHHh
Confidence 445899999999999998877653 3588999999876 555555
|
| >3oig_A Enoyl-[acyl-carrier-protein] reductase [NADH]; fatty acid synthesis, rossmann-like fold, enoyl-ACP reductas binding; HET: NAD IMJ; 1.25A {Bacillus subtilis} SCOP: c.2.1.2 PDB: 3oif_A* 2qio_A* 3oje_A 3ojf_A* | Back alignment and structure |
|---|
Probab=82.15 E-value=8 Score=30.12 Aligned_cols=108 Identities=10% Similarity=-0.027 Sum_probs=57.4
Q ss_pred ccCCeEEEeCCC--CcH---HHHHHHHhCCCeEEEEeCChHHHHHHHHHhHHhcCCCCCcceEeeecCCCCCC-------
Q 026036 76 IERRRCIELGSG--TGA---LAIFLRKAMNLDITTSDYNDQEIEDNIAYNSTTNGITPALPHIKHSWGDAFPI------- 143 (244)
Q Consensus 76 ~~~~~VLdlG~G--~G~---~~~~~a~~~~~~v~~~D~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------- 143 (244)
.++++||=.|++ .|+ ++..+++. +.+|+.++.++... +.++......+. .++..+..|..+....
T Consensus 5 l~~k~vlVTGasg~~GIG~~ia~~l~~~-G~~V~~~~r~~~~~-~~~~~~~~~~~~-~~~~~~~~D~~~~~~v~~~~~~~ 81 (266)
T 3oig_A 5 LEGRNIVVMGVANKRSIAWGIARSLHEA-GARLIFTYAGERLE-KSVHELAGTLDR-NDSIILPCDVTNDAEIETCFASI 81 (266)
T ss_dssp CTTCEEEEECCCSTTSHHHHHHHHHHHT-TCEEEEEESSGGGH-HHHHHHHHTSSS-CCCEEEECCCSSSHHHHHHHHHH
T ss_pred cCCCEEEEEcCCCCCcHHHHHHHHHHHC-CCEEEEecCchHHH-HHHHHHHHhcCC-CCceEEeCCCCCHHHHHHHHHHH
Confidence 367788888876 343 23334433 78999999886532 333332222111 1344555555443211
Q ss_pred --CCCCccEEEEcccccC---------CcChHHHH-----------HHHHHHHHhcCCCCceEee
Q 026036 144 --PNPDWDLILASDILLY---------VKQYSNLI-----------KSLSVLLKSYKPKDSQVGH 186 (244)
Q Consensus 144 --~~~~fD~I~~~~~l~~---------~~~~~~l~-----------~~l~~~~~~lk~gG~~~~~ 186 (244)
..++.|+++.+..+.. ....+.+. ..++.+.+.++++|+++.+
T Consensus 82 ~~~~g~id~li~~Ag~~~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~g~iv~i 146 (266)
T 3oig_A 82 KEQVGVIHGIAHCIAFANKEELVGEYLNTNRDGFLLAHNISSYSLTAVVKAARPMMTEGGSIVTL 146 (266)
T ss_dssp HHHHSCCCEEEECCCCCCGGGGSSCGGGCCHHHHHHHHHHHTHHHHHHHHHHGGGCTTCEEEEEE
T ss_pred HHHhCCeeEEEEccccccccccccchhhccHHHHHHHHHHhHHHHHHHHHHHHhhcCCCceEEEE
Confidence 0136898888765422 11122222 2455666777778887766
|
| >2cf5_A Atccad5, CAD, cinnamyl alcohol dehydrogenase; lignin biosynthesis, metal-binding, NADP, oxidoreductase, zinc; 2.0A {Arabidopsis thaliana} PDB: 2cf6_A* | Back alignment and structure |
|---|
Probab=82.13 E-value=3 Score=34.46 Aligned_cols=96 Identities=16% Similarity=0.116 Sum_probs=55.4
Q ss_pred cCcc-cCCeEEEeCCC-CcHHHHHHHHhCCCeEEEEeCChHHHHHHHHHhHHhcCCCCCcceEeeecCCC--CCCCCCCc
Q 026036 73 REWI-ERRRCIELGSG-TGALAIFLRKAMNLDITTSDYNDQEIEDNIAYNSTTNGITPALPHIKHSWGDA--FPIPNPDW 148 (244)
Q Consensus 73 ~~~~-~~~~VLdlG~G-~G~~~~~~a~~~~~~v~~~D~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~f 148 (244)
.... +|.+||=+|+| .|..++.+++..+++|+++|.+++.+ +.+++. .+.. .. ++..+. .....+.+
T Consensus 175 ~~~~~~g~~VlV~GaG~vG~~a~qlak~~Ga~Vi~~~~~~~~~-~~~~~~---lGa~---~v--i~~~~~~~~~~~~~g~ 245 (357)
T 2cf5_A 175 FGLKQPGLRGGILGLGGVGHMGVKIAKAMGHHVTVISSSNKKR-EEALQD---LGAD---DY--VIGSDQAKMSELADSL 245 (357)
T ss_dssp TSTTSTTCEEEEECCSHHHHHHHHHHHHHTCEEEEEESSTTHH-HHHHTT---SCCS---CE--EETTCHHHHHHSTTTE
T ss_pred cCCCCCCCEEEEECCCHHHHHHHHHHHHCCCeEEEEeCChHHH-HHHHHH---cCCc---ee--eccccHHHHHHhcCCC
Confidence 3455 88999999975 45556666666688999999987654 333311 1221 01 111110 00011368
Q ss_pred cEEEEcccccCCcChHHHHHHHHHHHHhcCCCCceEee
Q 026036 149 DLILASDILLYVKQYSNLIKSLSVLLKSYKPKDSQVGH 186 (244)
Q Consensus 149 D~I~~~~~l~~~~~~~~l~~~l~~~~~~lk~gG~~~~~ 186 (244)
|+|+-.-.- . ..++...+.++++|+++..
T Consensus 246 D~vid~~g~---~------~~~~~~~~~l~~~G~iv~~ 274 (357)
T 2cf5_A 246 DYVIDTVPV---H------HALEPYLSLLKLDGKLILM 274 (357)
T ss_dssp EEEEECCCS---C------CCSHHHHTTEEEEEEEEEC
T ss_pred CEEEECCCC---h------HHHHHHHHHhccCCEEEEe
Confidence 998753221 1 1234467889999998765
|
| >3is3_A 17BETA-hydroxysteroid dehydrogenase; short chain dehydrogenase/REDU SDR, fungi, oxidoreductase; HET: GOL; 1.48A {Cochliobolus lunatus} PDB: 3qwf_A* 3qwh_A* 3qwi_A* 3itd_A | Back alignment and structure |
|---|
Probab=80.68 E-value=11 Score=29.52 Aligned_cols=107 Identities=10% Similarity=0.112 Sum_probs=57.7
Q ss_pred ccCCeEEEeCCCCcHHHHHHHHhC---CCeEEEEeCCh-HHHHHHHHHhHHhcCCCCCcceEeeecCCCCCC--------
Q 026036 76 IERRRCIELGSGTGALAIFLRKAM---NLDITTSDYND-QEIEDNIAYNSTTNGITPALPHIKHSWGDAFPI-------- 143 (244)
Q Consensus 76 ~~~~~VLdlG~G~G~~~~~~a~~~---~~~v~~~D~~~-~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------- 143 (244)
.+++++|=-|++.| ++..+++.+ +.+|+.++... +.+ +.....+...+ .++..+..|..+....
T Consensus 16 l~~k~~lVTGas~g-IG~aia~~l~~~G~~V~~~~~~~~~~~-~~~~~~~~~~~--~~~~~~~~Dv~~~~~v~~~~~~~~ 91 (270)
T 3is3_A 16 LDGKVALVTGSGRG-IGAAVAVHLGRLGAKVVVNYANSTKDA-EKVVSEIKALG--SDAIAIKADIRQVPEIVKLFDQAV 91 (270)
T ss_dssp CTTCEEEESCTTSH-HHHHHHHHHHHTTCEEEEEESSCHHHH-HHHHHHHHHTT--CCEEEEECCTTSHHHHHHHHHHHH
T ss_pred cCCCEEEEECCCch-HHHHHHHHHHHCCCEEEEEcCCCHHHH-HHHHHHHHhcC--CcEEEEEcCCCCHHHHHHHHHHHH
Confidence 46778888776554 444444433 78899988754 333 33333333322 2334444554432110
Q ss_pred -CCCCccEEEEcccccCCc-----ChHHH-----------HHHHHHHHHhcCCCCceEee
Q 026036 144 -PNPDWDLILASDILLYVK-----QYSNL-----------IKSLSVLLKSYKPKDSQVGH 186 (244)
Q Consensus 144 -~~~~fD~I~~~~~l~~~~-----~~~~l-----------~~~l~~~~~~lk~gG~~~~~ 186 (244)
..++.|+++.+..+.... ..+++ ...++.+.+.++++|+++.+
T Consensus 92 ~~~g~id~lvnnAg~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~g~iv~i 151 (270)
T 3is3_A 92 AHFGHLDIAVSNSGVVSFGHLKDVTEEEFDRVFSLNTRGQFFVAREAYRHLTEGGRIVLT 151 (270)
T ss_dssp HHHSCCCEEECCCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHCCTTCEEEEE
T ss_pred HHcCCCCEEEECCCCCCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHhcCCeEEEE
Confidence 013689888776653221 11222 23456677788888887766
|
| >4ft4_B DNA (cytosine-5)-methyltransferase 1; chromodomain, BAH domain, DNA methyltransferase domain, H3K9 binding, methylation, transferase; HET: DNA MLY SAH; 2.70A {Zea mays} PDB: 4ft2_A* 4fsx_A* | Back alignment and structure |
|---|
Probab=80.59 E-value=1.8 Score=40.10 Aligned_cols=43 Identities=21% Similarity=0.259 Sum_probs=33.0
Q ss_pred cCCeEEEeCCCCcHHHHHHHHhCC------CeEEEEeCChHHHHHHHHHh
Q 026036 77 ERRRCIELGSGTGALAIFLRKAMN------LDITTSDYNDQEIEDNIAYN 120 (244)
Q Consensus 77 ~~~~VLdlG~G~G~~~~~~a~~~~------~~v~~~D~~~~~l~~~~~~~ 120 (244)
+..+||||-||.|.++.-+.+.++ .-+.++|+++.++ +..+.|
T Consensus 211 k~ltvIDLFAG~GGls~Gfe~AG~~~~~~f~vv~AvE~d~~A~-~Ty~~N 259 (784)
T 4ft4_B 211 RTATLLDLYSGCGGMSTGLCLGAALSGLKLETRWAVDFNSFAC-QSLKYN 259 (784)
T ss_dssp EEEEEEEETCTTSHHHHHHHHHHHHHTEEEEEEEEEESCHHHH-HHHHHH
T ss_pred CCCeEEEeCcCccHHHHHHHHhCcccCCceeEEEEEeCCHHHH-HHHHHH
Confidence 445899999999999888766541 3488999999876 555555
|
Homologous Structure Domains
Structure Domains Detected by RPS-BLAST
Original result of RPS-BLAST against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
E-value |
| 244 | ||||
| d1g6q1_ | 328 | c.66.1.6 (1:) Arginine methyltransferase, HMT1 {Ba | 0.004 |
| >d1g6q1_ c.66.1.6 (1:) Arginine methyltransferase, HMT1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 328 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Arginine methyltransferase domain: Arginine methyltransferase, HMT1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 35.2 bits (80), Expect = 0.004
Identities = 16/87 (18%), Positives = 34/87 (39%), Gaps = 5/87 (5%)
Query: 62 TFSFAEWLMHHREWIERRRCIELGSGTGALAIFLRKAMNLDITTSDYNDQEIEDNIAYNS 121
T S+ ++ +++ + + +++G GTG L++F K + D + I +
Sbjct: 23 TLSYRNAIIQNKDLFKDKIVLDVGCGTGILSMFAAKHGAKHVIGVDMS--SIIEMAKELV 80
Query: 122 TTNGITPALPHIKHSWGDAFPIPNPDW 148
NG + I G + P
Sbjct: 81 ELNGFS---DKITLLRGKLEDVHLPFP 104
|
Homologous Domains Detected by HHsearch
Original result of HHsearch against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 244 | |||
| d1nkva_ | 245 | Hypothetical Protein YjhP {Escherichia coli [TaxId | 99.85 | |
| d2o57a1 | 282 | Putative sarcosine dimethylglycine methyltransfera | 99.85 | |
| d1xxla_ | 234 | Hypothetical protein YcgJ {Bacillus subtilis [TaxI | 99.85 | |
| d1vl5a_ | 231 | Hypothetical protein BH2331 {Bacillus halodurans [ | 99.84 | |
| d2ex4a1 | 222 | Adrenal gland protein AD-003 (C9orf32) {Human (Hom | 99.8 | |
| d2fk8a1 | 280 | Methoxy mycolic acid synthase 4, Mma4 {Mycobacteri | 99.8 | |
| d1kpia_ | 291 | CmaA2 {Mycobacterium tuberculosis [TaxId: 1773]} | 99.79 | |
| d1kpga_ | 285 | CmaA1 {Mycobacterium tuberculosis [TaxId: 1773]} | 99.79 | |
| d1im8a_ | 225 | Hypothetical protein HI0319 (YecO) {Haemophilus in | 99.78 | |
| d1dusa_ | 194 | Hypothetical protein MJ0882 {Archaeon Methanococcu | 99.78 | |
| d1ve3a1 | 226 | Hypothetical protein PH0226 {Archaeon Pyrococcus h | 99.78 | |
| d2nxca1 | 254 | PrmA-like protein TTHA0656 (TT0836) {Thermus therm | 99.77 | |
| d1xtpa_ | 254 | Hypothetical protein Lmaj004091aaa (LmjF30.0810) { | 99.76 | |
| d1ri5a_ | 252 | mRNA cap (Guanine N-7) methyltransferase {Fungus ( | 99.76 | |
| d1y8ca_ | 246 | Putative methyltransferase CAC2371 {Clostridium ac | 99.76 | |
| d2p7ia1 | 225 | Hypothetical protein ECA1738 {Erwinia carotovora [ | 99.75 | |
| d1l3ia_ | 186 | Precorrin-6Y methyltransferase (CbiT) {Archaeon Me | 99.74 | |
| d2i6ga1 | 198 | Putative methyltransferase TehB {Salmonella typhim | 99.74 | |
| d2b3ta1 | 274 | N5-glutamine methyltransferase, HemK {Escherichia | 99.73 | |
| d1tw3a2 | 253 | Carminomycin 4-O-methyltransferase {Streptomyces p | 99.73 | |
| d1wzna1 | 251 | Hypothetical methyltransferase PH1305 {Archaeon Py | 99.72 | |
| d1vlma_ | 208 | Possible histamine N-methyltransferase TM1293 {The | 99.72 | |
| d2bzga1 | 229 | Thiopurine S-methyltransferase {Human (Homo sapien | 99.71 | |
| d1g8sa_ | 230 | Fibrillarin homologue {Archaeon Methanococcus jann | 99.68 | |
| d2a14a1 | 257 | Indolethylamine N-methyltransferase, INMT {Human ( | 99.68 | |
| d2avna1 | 246 | Hypothetical methyltransferase TM1389 {Thermotoga | 99.68 | |
| d1nv8a_ | 271 | N5-glutamine methyltransferase, HemK {Thermotoga m | 99.68 | |
| d1pjza_ | 201 | Thiopurine S-methyltransferase {Pseudomonas syring | 99.67 | |
| d1qzza2 | 256 | Aclacinomycin-10-hydroxylase RdmB {Streptomyces pu | 99.65 | |
| d2g72a1 | 263 | Phenylethanolamine N-methyltransferase, PNMTase {H | 99.64 | |
| d2gh1a1 | 281 | Methyltransferase BC2162 {Bacillus cereus [TaxId: | 99.63 | |
| d1yb2a1 | 250 | Hypothetical protein Ta0852 {Thermoplasma acidophi | 99.63 | |
| d1jqea_ | 280 | Histamine methyltransferase {Human (Homo sapiens) | 99.61 | |
| d1g6q1_ | 328 | Arginine methyltransferase, HMT1 {Baker's yeast (S | 99.6 | |
| d1oria_ | 316 | Protein arginine N-methyltransferase 1, PRMT1 {Rat | 99.6 | |
| d1zx0a1 | 229 | Guanidinoacetate methyltransferase {Human (Homo sa | 99.59 | |
| d1o54a_ | 266 | Hypothetical protein TM0748 {Thermotoga maritima [ | 99.59 | |
| d2fyta1 | 311 | Protein arginine N-methyltransferase 3, PRMT3 {Hum | 99.58 | |
| d1xvaa_ | 292 | Glycine N-methyltransferase {Rat (Rattus norvegicu | 99.58 | |
| d1wy7a1 | 201 | Hypothetical protein PH1948 {Archaeon Pyrococcus h | 99.56 | |
| d2frna1 | 260 | Hypothetical protein PH0793 {Pyrococcus horikoshii | 99.56 | |
| d1i9ga_ | 264 | Probable methyltransferase Rv2118c {Mycobacterium | 99.55 | |
| d1nt2a_ | 209 | Fibrillarin homologue {Archaeon Archaeoglobus fulg | 99.54 | |
| d2esra1 | 152 | Putative methyltransferase SPy1538 {Streptococcus | 99.53 | |
| d1p91a_ | 268 | rRNA methyltransferase RlmA {Escherichia coli [Tax | 99.52 | |
| d1dl5a1 | 213 | Protein-L-isoaspartyl O-methyltransferase {Thermot | 99.52 | |
| d2h00a1 | 250 | Methyltransferase 10 domain containing protein MET | 99.49 | |
| d1g8aa_ | 227 | Fibrillarin homologue {Archaeon Pyrococcus horikos | 99.48 | |
| d1ne2a_ | 197 | Hypothetical protein Ta1320 {Archaeon Thermoplasma | 99.45 | |
| d2b25a1 | 324 | Hypothetical protein FLJ20628 {Human (Homo sapiens | 99.44 | |
| d2as0a2 | 324 | Hypothetical protein PH1915, middle and C-terminal | 99.44 | |
| d1ws6a1 | 171 | Methyltransferase TTHA0928 {Thermus thermophilus [ | 99.43 | |
| d2fcaa1 | 204 | tRNA (guanine-N(7)-)-methyltransferase TrmB {Bacil | 99.42 | |
| d1i1na_ | 224 | Protein-L-isoaspartyl O-methyltransferase {Human ( | 99.41 | |
| d1wxxa2 | 318 | Hypothetical protein TTHA1280, middle and C-termin | 99.39 | |
| d1vbfa_ | 224 | Protein-L-isoaspartyl O-methyltransferase {Sulfolo | 99.37 | |
| d2b78a2 | 317 | Hypothetical protein SMu776, middle and C-terminal | 99.35 | |
| d2fpoa1 | 183 | Methylase YhhF {Escherichia coli [TaxId: 562]} | 99.35 | |
| d1u2za_ | 406 | Catalytic, N-terminal domain of histone methyltran | 99.34 | |
| d1jg1a_ | 215 | Protein-L-isoaspartyl O-methyltransferase {Archaeo | 99.34 | |
| d1yzha1 | 204 | tRNA (guanine-N(7)-)-methyltransferase TrmB {Strep | 99.33 | |
| d1nw3a_ | 328 | Catalytic, N-terminal domain of histone methyltran | 99.3 | |
| d2igta1 | 309 | Putative methyltransferase Atu0340 {Agrobacterium | 99.28 | |
| d2fhpa1 | 182 | Putative methylase EF2452 {Enterococcus faecalis [ | 99.28 | |
| d1fp1d2 | 244 | Chalcone O-methyltransferase {Alfalfa (Medicago sa | 99.26 | |
| d2ifta1 | 183 | Putative methylase HI0767 {Haemophilus influenzae | 99.16 | |
| d1r18a_ | 223 | Protein-L-isoaspartyl O-methyltransferase {Fruit f | 99.16 | |
| d1kyza2 | 243 | Caffeic acid/5-hydroxyferulic acid 3/5-O-methyltra | 99.15 | |
| d1uwva2 | 358 | rRNA (Uracil-5-)-methyltransferase RumA, catalytic | 99.15 | |
| d1fp2a2 | 244 | Isoflavone O-methyltransferase {Alfalfa (Medicago | 99.1 | |
| d2cl5a1 | 214 | Catechol O-methyltransferase, COMT {Rat (Rattus no | 99.0 | |
| d1af7a2 | 193 | Chemotaxis receptor methyltransferase CheR, C-term | 98.99 | |
| d2avda1 | 219 | COMT domain-containing protein 1, COMTD1 {Human (H | 98.99 | |
| d2f8la1 | 328 | Hypothetical protein Lmo1582 {Listeria monocytogen | 98.97 | |
| d1susa1 | 227 | Caffeoyl-CoA O-methyltransferase {Alfalfa (Medicag | 98.94 | |
| d1m6ya2 | 192 | TM0872, methyltransferase domain {Thermotoga marit | 98.82 | |
| d1jsxa_ | 207 | Glucose-inhibited division protein B (GidB) {Esche | 98.79 | |
| d1xdza_ | 239 | Glucose-inhibited division protein B (GidB) {Bacil | 98.72 | |
| d2ih2a1 | 223 | DNA methylase TaqI, N-terminal domain {Thermus aqu | 98.67 | |
| d2okca1 | 425 | Type I restriction enzyme StySJI M protein {Bacter | 98.53 | |
| d2dula1 | 375 | N(2),N(2)-dimethylguanosine tRNA methyltransferase | 98.51 | |
| d1qama_ | 235 | rRNA adenine dimethylase {Bacillus subtilis, Ermc' | 98.47 | |
| d1uira_ | 312 | Spermidine synthase {Thermus thermophilus [TaxId: | 98.44 | |
| d1zq9a1 | 278 | Probable dimethyladenosine transferase {Human (Hom | 98.4 | |
| d1mjfa_ | 276 | Putative spermidine synthetase PF0127 (SpeE) {Arch | 98.38 | |
| d1ixka_ | 313 | Hypothetical methyltransferase PH1374 {Archaeon Py | 98.27 | |
| d1inla_ | 295 | Spermidine synthase {Thermotoga maritima [TaxId: 2 | 98.26 | |
| d1yuba_ | 245 | rRNA adenine dimethylase {Streptococcus pneumoniae | 98.2 | |
| d2ar0a1 | 524 | M.EcoKI {Escherichia coli [TaxId: 562]} | 98.14 | |
| d1iy9a_ | 274 | Spermidine synthase {Bacillus subtilis [TaxId: 142 | 98.14 | |
| d2b2ca1 | 312 | Spermidine synthase {Caenorhabditis elegans [TaxId | 98.11 | |
| d2o07a1 | 285 | Spermidine synthase {Human (Homo sapiens) [TaxId: | 98.1 | |
| d1sqga2 | 284 | Ribosomal RNA small subunit methyltransferase B, R | 98.07 | |
| d1xj5a_ | 290 | Spermidine synthase {Thale cress (Arabidopsis thal | 98.06 | |
| d1qyra_ | 252 | High level kasugamycin resistance protein KsgA {Es | 97.86 | |
| d2b9ea1 | 293 | NOL1R {Human (Homo sapiens) [TaxId: 9606]} | 97.82 | |
| d1wg8a2 | 182 | TM0872, methyltransferase domain {Thermus thermoph | 97.79 | |
| d2p41a1 | 257 | An RNA cap (nucleoside-2'-O-)-methyltransferase do | 97.78 | |
| d1ej0a_ | 180 | RNA methyltransferase FtsJ {Escherichia coli [TaxI | 97.75 | |
| d2bm8a1 | 232 | Cephalosporin hydroxylase CmcI {Streptomyces clavu | 97.62 | |
| d1piwa2 | 168 | Cinnamyl alcohol dehydrogenase, ADH6 {Baker's yeas | 97.59 | |
| d1e3ja2 | 170 | Ketose reductase (sorbitol dehydrogenase) {Silverl | 97.29 | |
| d2oyra1 | 250 | Hypothetical protein YhiQ {Shigella flexneri [TaxI | 97.26 | |
| d1vj0a2 | 182 | Hypothetical protein TM0436 {Thermotoga maritima [ | 97.12 | |
| d1yb5a2 | 174 | Quinone oxidoreductase {Human (Homo sapiens) [TaxI | 97.04 | |
| d1llua2 | 166 | Alcohol dehydrogenase {Pseudomonas aeruginosa [Tax | 97.02 | |
| d1kola2 | 195 | Formaldehyde dehydrogenase {Pseudomonas putida [Ta | 97.01 | |
| d1jqba2 | 174 | Bacterial secondary alcohol dehydrogenase {Clostri | 96.93 | |
| d1pl8a2 | 171 | Ketose reductase (sorbitol dehydrogenase) {Human ( | 96.89 | |
| d1rjwa2 | 168 | Alcohol dehydrogenase {Bacillus stearothermophilus | 96.67 | |
| d1uufa2 | 168 | Hypothetical protein YahK {Escherichia coli [TaxId | 96.56 | |
| d1e3ia2 | 174 | Alcohol dehydrogenase {Mouse (Mus musculus), class | 96.49 | |
| d1i4wa_ | 322 | Transcription factor sc-mtTFB {Baker's yeast (Sacc | 96.21 | |
| d1g60a_ | 256 | Methyltransferase mboII {Moraxella bovis [TaxId: 4 | 96.1 | |
| d1xa0a2 | 176 | B. subtilis YhfP homologue {Bacillus stearothermop | 96.09 | |
| d1booa_ | 320 | m.PvuII N4 cytosine-specific DNA methyltransferase | 95.93 | |
| d1jvba2 | 170 | Alcohol dehydrogenase {Archaeon Sulfolobus solfata | 95.86 | |
| d1pjca1 | 168 | L-alanine dehydrogenase {Phormidium lapideum [TaxI | 95.81 | |
| d1o9ga_ | 249 | rRNA methyltransferase AviRa {Streptomyces viridoc | 95.7 | |
| d1eg2a_ | 279 | m.RsrI N6 adenosine-specific DNA methyltransferase | 95.66 | |
| d1zkda1 | 365 | Hypothetical protein RPA4359 {Rhodopseudomonas pal | 95.66 | |
| d1f8fa2 | 174 | Benzyl alcohol dehydrogenase {Acinetobacter calcoa | 95.64 | |
| d1tt7a2 | 167 | Hypothetical protein YhfP {Bacillus subtilis [TaxI | 95.6 | |
| d2c7pa1 | 327 | DNA methylase HhaI {Haemophilus haemolyticus [TaxI | 95.43 | |
| d1qora2 | 179 | Quinone oxidoreductase {Escherichia coli [TaxId: 5 | 95.37 | |
| d2f1ka2 | 165 | Prephenate dehydrogenase TyrA {Synechocystis sp. p | 95.24 | |
| d1pqwa_ | 183 | Putative enoyl reductase domain of polyketide synt | 95.21 | |
| d1v3va2 | 182 | Leukotriene b4 12-hydroxydehydrogenase/prostagland | 95.11 | |
| d2g5ca2 | 171 | Prephenate dehydrogenase TyrA {Aquifex aeolicus [T | 95.1 | |
| d1dcta_ | 324 | DNA methylase HaeIII {Haemophilus aegyptius [TaxId | 95.03 | |
| d1m6ex_ | 359 | Salicylic acid carboxyl methyltransferase (SAMT) { | 94.93 | |
| d1h2ba2 | 172 | Alcohol dehydrogenase {Archaeon Aeropyrum pernix [ | 94.72 | |
| d1l7da1 | 183 | Nicotinamide nucleotide transhydrogenase dI compon | 94.65 | |
| d1o89a2 | 177 | Hypothetical protein YhdH {Escherichia coli [TaxId | 94.29 | |
| d1gu7a2 | 189 | 2,4-dienoyl-CoA reductase {Yeast (Candida tropical | 93.55 | |
| d1xg5a_ | 257 | Putative dehydrogenase ARPG836 (MGC4172) {Human (H | 93.23 | |
| d1d1ta2 | 176 | Alcohol dehydrogenase {Human (Homo sapiens), diffe | 93.1 | |
| d2jhfa2 | 176 | Alcohol dehydrogenase {Horse (Equus caballus) [Tax | 93.05 | |
| d1p0fa2 | 174 | Alcohol dehydrogenase {Frog (Rana perezi) [TaxId: | 91.34 | |
| d2py6a1 | 395 | Methyltransferase FkbM {Methylobacillus flagellatu | 91.31 | |
| d1iz0a2 | 171 | Quinone oxidoreductase {Thermus thermophilus [TaxI | 90.48 | |
| d1p3da1 | 96 | UDP-N-acetylmuramate-alanine ligase MurC {Haemophi | 90.15 | |
| d1vj1a2 | 187 | Putative zinc-binding alcohol dehydrogenase {Mouse | 89.32 | |
| d1g55a_ | 343 | DNMT2 {Human (Homo sapiens) [TaxId: 9606]} | 89.0 | |
| d1cdoa2 | 175 | Alcohol dehydrogenase {Cod (Gadus callarias) [TaxI | 88.2 | |
| d2fzwa2 | 176 | Alcohol dehydrogenase {Human (Homo sapiens), diffe | 87.81 | |
| d1o8ca2 | 77 | Hypothetical protein YhdH {Escherichia coli [TaxId | 87.59 | |
| d1g0oa_ | 272 | 1,3,8-trihydroxynaphtalene reductase (THNR, naphto | 87.1 | |
| d1nyta1 | 170 | Shikimate 5-dehydrogenase AroE {Escherichia coli [ | 86.25 | |
| d1j6ua1 | 89 | UDP-N-acetylmuramate-alanine ligase MurC {Thermoto | 86.24 | |
| d1luaa1 | 191 | Methylene-tetrahydromethanopterin dehydrogenase {M | 84.56 | |
| d1bg6a2 | 184 | N-(1-D-carboxylethyl)-L-norvaline dehydrogenase {A | 84.37 | |
| d1eg2a_ | 279 | m.RsrI N6 adenosine-specific DNA methyltransferase | 83.65 | |
| d2pgda2 | 176 | 6-phosphogluconate dehydrogenase {Sheep (Ovis orie | 82.66 | |
| d1iy8a_ | 258 | Levodione reductase {Corynebacterium aquaticum [Ta | 82.38 | |
| d2gdza1 | 254 | 15-hydroxyprostaglandin dehydrogenase, PGDH {Human | 82.02 | |
| d1yb1a_ | 244 | 17-beta-hydroxysteroid dehydrogenase type XI {Huma | 81.84 | |
| d1xkqa_ | 272 | Hypothetical protein R05D8.7 {Caenorhabditis elega | 81.15 | |
| d1vi2a1 | 182 | Putative shikimate dehydrogenase YdiB {Escherichia | 81.05 | |
| d1fmca_ | 255 | 7-alpha-hydroxysteroid dehydrogenase {Escherichia | 81.03 | |
| d1g60a_ | 256 | Methyltransferase mboII {Moraxella bovis [TaxId: 4 | 80.77 | |
| d1lssa_ | 132 | Ktn Mja218 {Archaeon Methanococcus jannaschii [Tax | 80.69 | |
| d1nvta1 | 177 | Shikimate 5-dehydrogenase AroE {Archaeon Methanoco | 80.01 |
| >d1nkva_ c.66.1.21 (A:) Hypothetical Protein YjhP {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Hypothetical Protein YjhP domain: Hypothetical Protein YjhP species: Escherichia coli [TaxId: 562]
Probab=99.85 E-value=5.7e-22 Score=158.25 Aligned_cols=167 Identities=16% Similarity=0.064 Sum_probs=121.2
Q ss_pred echHHHHHHHHhhccCcccCCeEEEeCCCCcHHHHHHHHhCCCeEEEEeCChHHHHHHHHHhHHhcCCCCCcceEeeecC
Q 026036 59 WPGTFSFAEWLMHHREWIERRRCIELGSGTGALAIFLRKAMNLDITTSDYNDQEIEDNIAYNSTTNGITPALPHIKHSWG 138 (244)
Q Consensus 59 w~~~~~l~~~~~~~~~~~~~~~VLdlG~G~G~~~~~~a~~~~~~v~~~D~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 138 (244)
+|.+....+.+.....+.+|.+|||||||+|..+..+++..+++|+|+|+|+.|+ +.++++....++++++..+..+..
T Consensus 15 ~p~~~~~~~~l~~~~~l~pg~~VLDiGCG~G~~~~~la~~~~~~v~GvD~s~~~~-~~ar~~~~~~gl~~~v~~~~~d~~ 93 (245)
T d1nkva_ 15 NPFTEEKYATLGRVLRMKPGTRILDLGSGSGEMLCTWARDHGITGTGIDMSSLFT-AQAKRRAEELGVSERVHFIHNDAA 93 (245)
T ss_dssp SSCCHHHHHHHHHHTCCCTTCEEEEETCTTCHHHHHHHHHTCCEEEEEESCHHHH-HHHHHHHHHTTCTTTEEEEESCCT
T ss_pred CCCCHHHHHHHHHHcCCCCCCEEEEEcCCCCHHHHHHHHhcCCEEEEEecccchh-hHHHHHHHHhhccccchhhhhHHh
Confidence 5666667777878888889999999999999999999887788999999999997 888888888888776776665554
Q ss_pred CCCCCCCCCccEEEEcccccCCcChHHHHHHHHHHHHhcCCCCceEeecccccCCCCCCCCCCCeEEEeeeeccCccchh
Q 026036 139 DAFPIPNPDWDLILASDILLYVKQYSNLIKSLSVLLKSYKPKDSQVGHLTKNEQGEGTEGLPWPAFLMSWRRRIGKEDET 218 (244)
Q Consensus 139 ~~~~~~~~~fD~I~~~~~l~~~~~~~~l~~~l~~~~~~lk~gG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 218 (244)
+. ..+++||+|+|..++++..+ ..++++++++.|||||++++..+.......... ....+......... +..
T Consensus 94 ~~--~~~~~fD~v~~~~~~~~~~d---~~~~l~~~~r~LkPGG~l~i~~~~~~~~~~~~~-~~~~~~~~~~~~~~--~~~ 165 (245)
T d1nkva_ 94 GY--VANEKCDVAACVGATWIAGG---FAGAEELLAQSLKPGGIMLIGEPYWRQLPATEE-IAQACGVSSTSDFL--TLP 165 (245)
T ss_dssp TC--CCSSCEEEEEEESCGGGTSS---SHHHHHHHTTSEEEEEEEEEEEEEETTCCSSHH-HHHTTTCSCGGGSC--CHH
T ss_pred hc--cccCceeEEEEEehhhccCC---HHHHHHHHHHHcCcCcEEEEEeccccCCCChHH-HHHHhccCCCcccC--CHH
Confidence 43 34678999999999955443 449999999999999999988554332210000 00000000111121 246
Q ss_pred hHHHHHhhcCCeEEEe
Q 026036 219 IFFTSCENAGLEVKHL 234 (244)
Q Consensus 219 ~~~~~l~~~Gf~v~~~ 234 (244)
.+...++++||++...
T Consensus 166 ~~~~~~~~aG~~~v~~ 181 (245)
T d1nkva_ 166 GLVGAFDDLGYDVVEM 181 (245)
T ss_dssp HHHHHHHTTTBCCCEE
T ss_pred HHHHHHHHcCCEEEEE
Confidence 7889999999987654
|
| >d2o57a1 c.66.1.18 (A:16-297) Putative sarcosine dimethylglycine methyltransferase {Red algae (Galdieria sulphuraria) [TaxId: 130081]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Mycolic acid cyclopropane synthase domain: Putative sarcosine dimethylglycine methyltransferase species: Red algae (Galdieria sulphuraria) [TaxId: 130081]
Probab=99.85 E-value=2.4e-21 Score=157.78 Aligned_cols=165 Identities=16% Similarity=0.186 Sum_probs=117.2
Q ss_pred HHHHHHhhccCcccCCeEEEeCCCCcHHHHHHHHhCCCeEEEEeCChHHHHHHHHHhHHhcCCCCCcceEeeecCCCCCC
Q 026036 64 SFAEWLMHHREWIERRRCIELGSGTGALAIFLRKAMNLDITTSDYNDQEIEDNIAYNSTTNGITPALPHIKHSWGDAFPI 143 (244)
Q Consensus 64 ~l~~~~~~~~~~~~~~~VLdlG~G~G~~~~~~a~~~~~~v~~~D~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 143 (244)
.+++.+.....+.++.+|||||||+|.++..+++..+++|+|+|+|+.++ +.++++....++..++..+..+.. .+++
T Consensus 54 ~~~~~l~~~~~l~~~~~vLDiGcG~G~~~~~la~~~~~~v~gvD~s~~~i-~~a~~~~~~~gl~~~v~~~~~d~~-~l~~ 131 (282)
T d2o57a1 54 WLASELAMTGVLQRQAKGLDLGAGYGGAARFLVRKFGVSIDCLNIAPVQN-KRNEEYNNQAGLADNITVKYGSFL-EIPC 131 (282)
T ss_dssp HHHHHHHHTTCCCTTCEEEEETCTTSHHHHHHHHHHCCEEEEEESCHHHH-HHHHHHHHHHTCTTTEEEEECCTT-SCSS
T ss_pred HHHHHHHHhcCCCCCCEEEEeCCCCcHHHhhhhccCCcEEEEEeccchhh-hhhhcccccccccccccccccccc-cccc
Confidence 34444555566778999999999999999999887788999999999997 788888777777666666665554 3567
Q ss_pred CCCCccEEEEcccccCCcChHHHHHHHHHHHHhcCCCCceEeecccccCCCCCCCCCCCeEEEeeeeccCccchhhHHHH
Q 026036 144 PNPDWDLILASDILLYVKQYSNLIKSLSVLLKSYKPKDSQVGHLTKNEQGEGTEGLPWPAFLMSWRRRIGKEDETIFFTS 223 (244)
Q Consensus 144 ~~~~fD~I~~~~~l~~~~~~~~l~~~l~~~~~~lk~gG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 223 (244)
++++||+|++..++++.. +..++++++.++|||||++++............. ..+.+......... +...+.++
T Consensus 132 ~~~sfD~V~~~~~l~h~~---d~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~--s~~~~~~~ 205 (282)
T d2o57a1 132 EDNSYDFIWSQDAFLHSP---DKLKVFQECARVLKPRGVMAITDPMKEDGIDKSS-IQPILDRIKLHDMG--SLGLYRSL 205 (282)
T ss_dssp CTTCEEEEEEESCGGGCS---CHHHHHHHHHHHEEEEEEEEEEEEEECTTCCGGG-GHHHHHHHTCSSCC--CHHHHHHH
T ss_pred cccccchhhccchhhhcc---CHHHHHHHHHHhcCCCcEEEEEEeecCCCCchhH-HHHHHHHhccCCCC--CHHHHHHH
Confidence 778999999999995543 4458999999999999999887444332211100 00000000011122 24678899
Q ss_pred HhhcCCeEEEecc
Q 026036 224 CENAGLEVKHLGS 236 (244)
Q Consensus 224 l~~~Gf~v~~~~~ 236 (244)
++++||+...+.+
T Consensus 206 l~~~Gf~~i~~~d 218 (282)
T d2o57a1 206 AKECGLVTLRTFS 218 (282)
T ss_dssp HHHTTEEEEEEEE
T ss_pred HHHcCCceEEEEE
Confidence 9999998877654
|
| >d1xxla_ c.66.1.41 (A:) Hypothetical protein YcgJ {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: UbiE/COQ5-like domain: Hypothetical protein YcgJ species: Bacillus subtilis [TaxId: 1423]
Probab=99.85 E-value=1.4e-21 Score=154.91 Aligned_cols=166 Identities=11% Similarity=0.100 Sum_probs=114.4
Q ss_pred HHHHhhccCcccCCeEEEeCCCCcHHHHHHHHhCCCeEEEEeCChHHHHHHHHHhHHhcCCCCCcceEeeecCCCCCCCC
Q 026036 66 AEWLMHHREWIERRRCIELGSGTGALAIFLRKAMNLDITTSDYNDQEIEDNIAYNSTTNGITPALPHIKHSWGDAFPIPN 145 (244)
Q Consensus 66 ~~~~~~~~~~~~~~~VLdlG~G~G~~~~~~a~~~~~~v~~~D~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 145 (244)
.+++.+...+.+|.||||||||+|.++..+++. +.+|+|+|+|+.|+ +.++++...++. .++..+..+. +.+++++
T Consensus 5 ~~~l~~~~~~~~~~rILDiGcGtG~~~~~la~~-~~~v~gvD~S~~~l-~~A~~~~~~~~~-~~~~~~~~d~-~~~~~~~ 80 (234)
T d1xxla_ 5 LGLMIKTAECRAEHRVLDIGAGAGHTALAFSPY-VQECIGVDATKEMV-EVASSFAQEKGV-ENVRFQQGTA-ESLPFPD 80 (234)
T ss_dssp HHHHHHHHTCCTTCEEEEESCTTSHHHHHHGGG-SSEEEEEESCHHHH-HHHHHHHHHHTC-CSEEEEECBT-TBCCSCT
T ss_pred HHHHHHHhCCCCCCEEEEeCCcCcHHHHHHHHh-CCeEEEEeCChhhh-hhhhhhhccccc-cccccccccc-ccccccc
Confidence 455666678889999999999999999999887 57999999999998 788887777666 2344444444 3467778
Q ss_pred CCccEEEEcccccCCcChHHHHHHHHHHHHhcCCCCceEeecccccCCC--CCCCCC-CCeEEEeeeeccCccchhhHHH
Q 026036 146 PDWDLILASDILLYVKQYSNLIKSLSVLLKSYKPKDSQVGHLTKNEQGE--GTEGLP-WPAFLMSWRRRIGKEDETIFFT 222 (244)
Q Consensus 146 ~~fD~I~~~~~l~~~~~~~~l~~~l~~~~~~lk~gG~~~~~~~~~~~~~--~~~~~~-~~~~~~~~~~~~~~~~~~~~~~ 222 (244)
++||+|+|..++++. ++..++++++.++|||||++++......... ..+... ...+...+.+. .+...+..
T Consensus 81 ~~fD~v~~~~~l~~~---~d~~~~l~~~~r~LkpgG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~ 154 (234)
T d1xxla_ 81 DSFDIITCRYAAHHF---SDVRKAVREVARVLKQDGRFLLVDHYAPEDPVLDEFVNHLNRLRDPSHVRE---SSLSEWQA 154 (234)
T ss_dssp TCEEEEEEESCGGGC---SCHHHHHHHHHHHEEEEEEEEEEEECBCSSHHHHHHHHHHHHHHCTTCCCC---CBHHHHHH
T ss_pred cccceeeeeceeecc---cCHHHHHHHHHHeeCCCcEEEEEEcCCCCCHHHHHHHHHHHhhCCCccccc---CCHHHHHH
Confidence 899999999999443 3455999999999999999988643322111 000000 00000001111 12467888
Q ss_pred HHhhcCCeEEEeccEEEEE
Q 026036 223 SCENAGLEVKHLGSRVYCI 241 (244)
Q Consensus 223 ~l~~~Gf~v~~~~~~~~~~ 241 (244)
+++++||+++++....+.+
T Consensus 155 ~~~~~gf~~~~~~~~~~~~ 173 (234)
T d1xxla_ 155 MFSANQLAYQDIQKWNLPI 173 (234)
T ss_dssp HHHHTTEEEEEEEEEEEEE
T ss_pred HHHHCCCceeEEEEeeCcc
Confidence 9999999998887654443
|
| >d1vl5a_ c.66.1.41 (A:) Hypothetical protein BH2331 {Bacillus halodurans [TaxId: 86665]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: UbiE/COQ5-like domain: Hypothetical protein BH2331 species: Bacillus halodurans [TaxId: 86665]
Probab=99.84 E-value=1.7e-21 Score=153.77 Aligned_cols=154 Identities=11% Similarity=0.066 Sum_probs=106.6
Q ss_pred cCcccCCeEEEeCCCCcHHHHHHHHhCCCeEEEEeCChHHHHHHHHHhHHhcCCCCCcceEeeecCCCCCCCCCCccEEE
Q 026036 73 REWIERRRCIELGSGTGALAIFLRKAMNLDITTSDYNDQEIEDNIAYNSTTNGITPALPHIKHSWGDAFPIPNPDWDLIL 152 (244)
Q Consensus 73 ~~~~~~~~VLdlG~G~G~~~~~~a~~~~~~v~~~D~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fD~I~ 152 (244)
..+.++.+|||||||+|.++..+++. +.+|+|+|+|++|+ +.++++....+. .++..+..++. .+++++++||+|+
T Consensus 11 ~~l~~~~rVLDiGcG~G~~~~~l~~~-~~~v~gvD~s~~~i-~~A~~~~~~~~~-~~i~~~~~d~~-~l~~~~~~fD~v~ 86 (231)
T d1vl5a_ 11 AALKGNEEVLDVATGGGHVANAFAPF-VKKVVAFDLTEDIL-KVARAFIEGNGH-QQVEYVQGDAE-QMPFTDERFHIVT 86 (231)
T ss_dssp HTCCSCCEEEEETCTTCHHHHHHGGG-SSEEEEEESCHHHH-HHHHHHHHHTTC-CSEEEEECCC--CCCSCTTCEEEEE
T ss_pred cCCCCcCEEEEecccCcHHHHHHHHh-CCEEEEEECCHHHH-hhhhhccccccc-ccccccccccc-ccccccccccccc
Confidence 45668899999999999999999877 67999999999998 788888777665 33444544443 3567788999999
Q ss_pred EcccccCCcChHHHHHHHHHHHHhcCCCCceEeecccccCCC--CCCCCC-CCeEEEeeeeccCccchhhHHHHHhhcCC
Q 026036 153 ASDILLYVKQYSNLIKSLSVLLKSYKPKDSQVGHLTKNEQGE--GTEGLP-WPAFLMSWRRRIGKEDETIFFTSCENAGL 229 (244)
Q Consensus 153 ~~~~l~~~~~~~~l~~~l~~~~~~lk~gG~~~~~~~~~~~~~--~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~l~~~Gf 229 (244)
|..++++. ++..++++++.++|||||++++.......+. ...... .......+.+.+ +.+++.++++++||
T Consensus 87 ~~~~l~~~---~d~~~~l~~~~r~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~l~~aGf 160 (231)
T d1vl5a_ 87 CRIAAHHF---PNPASFVSEAYRVLKKGGQLLLVDNSAPENDAFDVFYNYVEKERDYSHHRAW---KKSDWLKMLEEAGF 160 (231)
T ss_dssp EESCGGGC---SCHHHHHHHHHHHEEEEEEEEEEEEEBCSSHHHHHHHHHHHHHHCTTCCCCC---BHHHHHHHHHHHTC
T ss_pred cccccccc---CCHHHHHHHHHHhcCCCcEEEEEeCCCCCCHHHHHHHHHHHhhcccCcccCC---CHHHHHHHHHHCCC
Confidence 99999443 3455999999999999999998744332211 000000 000000011111 24788899999999
Q ss_pred eEEEecc
Q 026036 230 EVKHLGS 236 (244)
Q Consensus 230 ~v~~~~~ 236 (244)
+++++..
T Consensus 161 ~~~~~~~ 167 (231)
T d1vl5a_ 161 ELEELHC 167 (231)
T ss_dssp EEEEEEE
T ss_pred EEEEEEE
Confidence 9887653
|
| >d2ex4a1 c.66.1.42 (A:2-224) Adrenal gland protein AD-003 (C9orf32) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: AD-003 protein-like domain: Adrenal gland protein AD-003 (C9orf32) species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.80 E-value=1.6e-19 Score=141.81 Aligned_cols=150 Identities=13% Similarity=0.075 Sum_probs=103.6
Q ss_pred cCcccCCeEEEeCCCCcHHHHHHHHhCCCeEEEEeCChHHHHHHHHHhHHhcCCCCCcceEeeecCCCCCCCCCCccEEE
Q 026036 73 REWIERRRCIELGSGTGALAIFLRKAMNLDITTSDYNDQEIEDNIAYNSTTNGITPALPHIKHSWGDAFPIPNPDWDLIL 152 (244)
Q Consensus 73 ~~~~~~~~VLdlG~G~G~~~~~~a~~~~~~v~~~D~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fD~I~ 152 (244)
....++.+|||||||+|..+..++.....+|+++|+|++|+ +.++++....+.. .+..+..+.. .+++..++||+|+
T Consensus 56 ~~~~~~~~vLDiGcG~G~~~~~l~~~~~~~v~~vD~s~~~l-~~ak~~~~~~~~~-~~~f~~~d~~-~~~~~~~~fD~I~ 132 (222)
T d2ex4a1 56 PNKTGTSCALDCGAGIGRITKRLLLPLFREVDMVDITEDFL-VQAKTYLGEEGKR-VRNYFCCGLQ-DFTPEPDSYDVIW 132 (222)
T ss_dssp --CCCCSEEEEETCTTTHHHHHTTTTTCSEEEEEESCHHHH-HHHHHHTGGGGGG-EEEEEECCGG-GCCCCSSCEEEEE
T ss_pred cCCCCCCEEEEeccCCCHhhHHHHHhcCCEEEEeecCHHHh-hcccccccccccc-cccccccccc-ccccccccccccc
Confidence 34456789999999999999888766678999999999998 7777776554431 1222333332 2455667999999
Q ss_pred EcccccCCcChHHHHHHHHHHHHhcCCCCceEeecccccCCCCCCCCCCCeEEEeeeeccCccchhhHHHHHhhcCCeEE
Q 026036 153 ASDILLYVKQYSNLIKSLSVLLKSYKPKDSQVGHLTKNEQGEGTEGLPWPAFLMSWRRRIGKEDETIFFTSCENAGLEVK 232 (244)
Q Consensus 153 ~~~~l~~~~~~~~l~~~l~~~~~~lk~gG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gf~v~ 232 (244)
+.+++ ++...+++.++++++++.|||||.+++......... ........+. .+...+.++++++||+++
T Consensus 133 ~~~~l-~h~~~~~~~~~l~~i~~~Lk~~G~~~i~~~~~~~~~---------~~~~~~~~~~-~~~~~~~~l~~~aGf~ii 201 (222)
T d2ex4a1 133 IQWVI-GHLTDQHLAEFLRRCKGSLRPNGIIVIKDNMAQEGV---------ILDDVDSSVC-RDLDVVRRIICSAGLSLL 201 (222)
T ss_dssp EESCG-GGSCHHHHHHHHHHHHHHEEEEEEEEEEEEEBSSSE---------EEETTTTEEE-EBHHHHHHHHHHTTCCEE
T ss_pred ccccc-ccchhhhhhhHHHHHHHhcCCcceEEEEEccccccc---------ccccCCceee-CCHHHHHHHHHHcCCEEE
Confidence 99999 555556677999999999999999988744332211 1100000010 135788999999999987
Q ss_pred Eecc
Q 026036 233 HLGS 236 (244)
Q Consensus 233 ~~~~ 236 (244)
+...
T Consensus 202 ~~~~ 205 (222)
T d2ex4a1 202 AEER 205 (222)
T ss_dssp EEEE
T ss_pred EEEE
Confidence 7653
|
| >d2fk8a1 c.66.1.18 (A:22-301) Methoxy mycolic acid synthase 4, Mma4 {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Mycolic acid cyclopropane synthase domain: Methoxy mycolic acid synthase 4, Mma4 species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=99.80 E-value=4.5e-19 Score=143.66 Aligned_cols=168 Identities=8% Similarity=0.054 Sum_probs=116.8
Q ss_pred hHHHHHHHHhhccCcccCCeEEEeCCCCcHHHHHHHHhCCCeEEEEeCChHHHHHHHHHhHHhcCCCCCcceEeeecCCC
Q 026036 61 GTFSFAEWLMHHREWIERRRCIELGSGTGALAIFLRKAMNLDITTSDYNDQEIEDNIAYNSTTNGITPALPHIKHSWGDA 140 (244)
Q Consensus 61 ~~~~l~~~~~~~~~~~~~~~VLdlG~G~G~~~~~~a~~~~~~v~~~D~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 140 (244)
+.....+.+.+...+.+|.+|||||||+|.++..+++..+++|+|+|+|++++ +.+++.+...++...+.....+..
T Consensus 36 AQ~~k~~~~~~~l~l~~g~~VLDiGCG~G~~a~~~a~~~g~~v~gi~ls~~q~-~~a~~~~~~~~l~~~~~~~~~d~~-- 112 (280)
T d2fk8a1 36 AQYAKVDLNLDKLDLKPGMTLLDIGCGWGTTMRRAVERFDVNVIGLTLSKNQH-ARCEQVLASIDTNRSRQVLLQGWE-- 112 (280)
T ss_dssp HHHHHHHHHHTTSCCCTTCEEEEESCTTSHHHHHHHHHHCCEEEEEESCHHHH-HHHHHHHHTSCCSSCEEEEESCGG--
T ss_pred HHHHHHHHHHHHcCCCCCCEEEEecCCchHHHHHHHHhCceeEEEecchHHHH-HHHHHHHHhhccccchhhhhhhhh--
Confidence 44556677888888889999999999999999999888789999999999987 788888777777544433332221
Q ss_pred CCCCCCCccEEEEcccccCCcChHHHHHHHHHHHHhcCCCCceEeecccccCCCCCCCCC---------CCeEEEe---e
Q 026036 141 FPIPNPDWDLILASDILLYVKQYSNLIKSLSVLLKSYKPKDSQVGHLTKNEQGEGTEGLP---------WPAFLMS---W 208 (244)
Q Consensus 141 ~~~~~~~fD~I~~~~~l~~~~~~~~l~~~l~~~~~~lk~gG~~~~~~~~~~~~~~~~~~~---------~~~~~~~---~ 208 (244)
..+++||.|++..++ .|...+.+...+++++++|||||++++.+............. ...|+.. .
T Consensus 113 --~~~~~fD~i~si~~~-eh~~~~~~~~~f~~i~~~LkpgG~~~i~~i~~~~~~~~~~~~~~~~~~~~~~~dfI~kyifP 189 (280)
T d2fk8a1 113 --DFAEPVDRIVSIEAF-EHFGHENYDDFFKRCFNIMPADGRMTVQSSVSYHPYEMAARGKKLSFETARFIKFIVTEIFP 189 (280)
T ss_dssp --GCCCCCSEEEEESCG-GGTCGGGHHHHHHHHHHHSCTTCEEEEEEEECCCHHHHHTTCHHHHHHHHHHHHHHHHHTST
T ss_pred --hhccchhhhhHhhHH-HHhhhhhHHHHHHHHHhccCCCceEEEEEeeccCcchhhhcccccccccccccchhhhhccC
Confidence 234689999999999 555556777999999999999999998632221100000000 0000000 0
Q ss_pred eeccCccchhhHHHHHhhcCCeEEEecc
Q 026036 209 RRRIGKEDETIFFTSCENAGLEVKHLGS 236 (244)
Q Consensus 209 ~~~~~~~~~~~~~~~l~~~Gf~v~~~~~ 236 (244)
....+ +.+.+.+.++++||++.++.+
T Consensus 190 gg~lP--S~~~l~~~~e~aGf~v~~~~~ 215 (280)
T d2fk8a1 190 GGRLP--STEMMVEHGEKAGFTVPEPLS 215 (280)
T ss_dssp TCCCC--CHHHHHHHHHHTTCBCCCCEE
T ss_pred CCccc--chHhhhhhHHhhccccceeee
Confidence 00122 357888999999999887653
|
| >d1kpia_ c.66.1.18 (A:) CmaA2 {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Mycolic acid cyclopropane synthase domain: CmaA2 species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=99.79 E-value=2.6e-18 Score=139.58 Aligned_cols=169 Identities=9% Similarity=0.043 Sum_probs=117.7
Q ss_pred hHHHHHHHHhhccCcccCCeEEEeCCCCcHHHHHHHHhCCCeEEEEeCChHHHHHHHHHhHHhcCCCCCcceEeeecCCC
Q 026036 61 GTFSFAEWLMHHREWIERRRCIELGSGTGALAIFLRKAMNLDITTSDYNDQEIEDNIAYNSTTNGITPALPHIKHSWGDA 140 (244)
Q Consensus 61 ~~~~l~~~~~~~~~~~~~~~VLdlG~G~G~~~~~~a~~~~~~v~~~D~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 140 (244)
+-....+++.+...+.+|.+|||||||+|.+++.+|+..+++|+|+++|++++ +.++..+...++..++.. ...+.
T Consensus 45 Aq~~k~~~~~~~l~l~~G~~VLDiGCG~G~~~~~~a~~~g~~v~git~s~~q~-~~a~~~~~~~~l~~~v~~---~~~d~ 120 (291)
T d1kpia_ 45 AQYAKRKLALDKLNLEPGMTLLDIGCGWGSTMRHAVAEYDVNVIGLTLSENQY-AHDKAMFDEVDSPRRKEV---RIQGW 120 (291)
T ss_dssp HHHHHHHHHHHTTCCCTTCEEEEETCTTSHHHHHHHHHHCCEEEEEESCHHHH-HHHHHHHHHSCCSSCEEE---EECCG
T ss_pred HHHHHHHHHHHhcCCCCCCEEEEecCcchHHHHHHHHhcCcceeeccchHHHH-HHHHHHHHhhccchhhhh---hhhcc
Confidence 45566788888888999999999999999999999988899999999999987 777777777777544433 33332
Q ss_pred CCCCCCCccEEEEcccccCCcC------hHHHHHHHHHHHHhcCCCCceEeecccccCCCC--CCCCCCC-------eEE
Q 026036 141 FPIPNPDWDLILASDILLYVKQ------YSNLIKSLSVLLKSYKPKDSQVGHLTKNEQGEG--TEGLPWP-------AFL 205 (244)
Q Consensus 141 ~~~~~~~fD~I~~~~~l~~~~~------~~~l~~~l~~~~~~lk~gG~~~~~~~~~~~~~~--~~~~~~~-------~~~ 205 (244)
+..+++||.|+|..++-|... .+.....++++.++|||||++++.+....+... ......| .|+
T Consensus 121 -~~~~~~fD~i~sie~~eH~~~~~~~~~~~~~~~~f~~i~~~LkpgG~~~l~~i~~~~~~~~~~~~~~~p~~~~~~~~fi 199 (291)
T d1kpia_ 121 -EEFDEPVDRIVSLGAFEHFADGAGDAGFERYDTFFKKFYNLTPDDGRMLLHTITIPDKEEAQELGLTSPMSLLRFIKFI 199 (291)
T ss_dssp -GGCCCCCSEEEEESCGGGTTCCSSCCSTTHHHHHHHHHHHTSCTTCEEEEEEEECCCHHHHHHHTCCCCHHHHHHHHHH
T ss_pred -cccccccceEeechhHHhcchhhhhhHHHHHHHHHHHHHHhCCCCCceEEEEEeccCcchhhhccCCCchhhcccchHH
Confidence 344678999999999933222 245679999999999999999987443221110 0000000 011
Q ss_pred Ee---eeeccCccchhhHHHHHhhcCCeEEEecc
Q 026036 206 MS---WRRRIGKEDETIFFTSCENAGLEVKHLGS 236 (244)
Q Consensus 206 ~~---~~~~~~~~~~~~~~~~l~~~Gf~v~~~~~ 236 (244)
.. .....+ +..++...++++||+++++..
T Consensus 200 ~kyiFpgg~lp--s~~~~~~~~e~~gl~v~~~~~ 231 (291)
T d1kpia_ 200 LTEIFPGGRLP--RISQVDYYSSNAGWKVERYHR 231 (291)
T ss_dssp HHHTCTTCCCC--CHHHHHHHHHHHTCEEEEEEE
T ss_pred HHHhcCCCCCC--CHHHHHhhhcccccccceeee
Confidence 00 011222 257888899999999988753
|
| >d1kpga_ c.66.1.18 (A:) CmaA1 {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Mycolic acid cyclopropane synthase domain: CmaA1 species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=99.79 E-value=3e-18 Score=138.81 Aligned_cols=169 Identities=8% Similarity=0.064 Sum_probs=119.6
Q ss_pred chHHHHHHHHhhccCcccCCeEEEeCCCCcHHHHHHHHhCCCeEEEEeCChHHHHHHHHHhHHhcCCCCCcceEeeecCC
Q 026036 60 PGTFSFAEWLMHHREWIERRRCIELGSGTGALAIFLRKAMNLDITTSDYNDQEIEDNIAYNSTTNGITPALPHIKHSWGD 139 (244)
Q Consensus 60 ~~~~~l~~~~~~~~~~~~~~~VLdlG~G~G~~~~~~a~~~~~~v~~~D~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 139 (244)
.+.....+++.+...+.+|.+|||||||.|.+++.+|+..+++|+|+++|++.+ +.+++.+...++..++.....++.+
T Consensus 45 eAQ~~k~~~~~~~l~l~~G~~VLDiGCG~G~~a~~~a~~~g~~v~git~s~~Q~-~~a~~~~~~~g~~~~v~~~~~d~~~ 123 (285)
T d1kpga_ 45 EAQIAKIDLALGKLGLQPGMTLLDVGCGWGATMMRAVEKYDVNVVGLTLSKNQA-NHVQQLVANSENLRSKRVLLAGWEQ 123 (285)
T ss_dssp HHHHHHHHHHHTTTTCCTTCEEEEETCTTSHHHHHHHHHHCCEEEEEESCHHHH-HHHHHHHHTCCCCSCEEEEESCGGG
T ss_pred HHHHHHHHHHHHHcCCCCCCEEEEecCcchHHHHHHHhcCCcceEEEeccHHHH-HHHHHHHHhhhhhhhhHHHHhhhhc
Confidence 356677788888889999999999999999999999888899999999999987 7887777777775555444433322
Q ss_pred CCCCCCCCccEEEEcccccCCcChHHHHHHHHHHHHhcCCCCceEeecccccCCCCCCCCC--C-------CeEEEe---
Q 026036 140 AFPIPNPDWDLILASDILLYVKQYSNLIKSLSVLLKSYKPKDSQVGHLTKNEQGEGTEGLP--W-------PAFLMS--- 207 (244)
Q Consensus 140 ~~~~~~~~fD~I~~~~~l~~~~~~~~l~~~l~~~~~~lk~gG~~~~~~~~~~~~~~~~~~~--~-------~~~~~~--- 207 (244)
.+++||.|++..++ .|.........++++.++|||||++++.+............. . ..|+..
T Consensus 124 ----~~~~fD~i~si~~~-eh~~~~~~~~~~~~~~r~LkpgG~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~fi~kyiF 198 (285)
T d1kpga_ 124 ----FDEPVDRIVSIGAF-EHFGHERYDAFFSLAHRLLPADGVMLLHTITGLHPKEIHERGLPMSFTFARFLKFIVTEIF 198 (285)
T ss_dssp ----CCCCCSEEEEESCG-GGTCTTTHHHHHHHHHHHSCTTCEEEEEEEEECCHHHHTTTTCSCHHHHHHHHHHHHHHTS
T ss_pred ----ccccccceeeehhh-hhcCchhHHHHHHHHHhhcCCCCcEEEEEEeccCchhhccccCCcchhhhchhhHHHHHhc
Confidence 24689999999999 555446667999999999999999998743321110000000 0 000000
Q ss_pred eeeccCccchhhHHHHHhhcCCeEEEecc
Q 026036 208 WRRRIGKEDETIFFTSCENAGLEVKHLGS 236 (244)
Q Consensus 208 ~~~~~~~~~~~~~~~~l~~~Gf~v~~~~~ 236 (244)
.....+ +...+.+.++++||+++++..
T Consensus 199 pgg~lP--sl~~~~~~~e~agf~v~~~~~ 225 (285)
T d1kpga_ 199 PGGRLP--SIPMVQECASANGFTVTRVQS 225 (285)
T ss_dssp TTCCCC--CHHHHHHHHHTTTCEEEEEEE
T ss_pred cCCCCC--ChhhHHHHHHHhchhhccccc
Confidence 011122 257888899999999998754
|
| >d1im8a_ c.66.1.14 (A:) Hypothetical protein HI0319 (YecO) {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Hypothetical protein HI0319 (YecO) domain: Hypothetical protein HI0319 (YecO) species: Haemophilus influenzae [TaxId: 727]
Probab=99.78 E-value=1.5e-18 Score=136.35 Aligned_cols=107 Identities=13% Similarity=0.138 Sum_probs=85.7
Q ss_pred ccCCeEEEeCCCCcHHHHHHHHhC---CCeEEEEeCChHHHHHHHHHhHHhcCCCCCcceEeeecCCCCCCCCCCccEEE
Q 026036 76 IERRRCIELGSGTGALAIFLRKAM---NLDITTSDYNDQEIEDNIAYNSTTNGITPALPHIKHSWGDAFPIPNPDWDLIL 152 (244)
Q Consensus 76 ~~~~~VLdlG~G~G~~~~~~a~~~---~~~v~~~D~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fD~I~ 152 (244)
.++.+|||||||+|..+..+++.. +.+|+|+|+|+.|+ +.+++++....... .+.+...+..+.+...+|+|+
T Consensus 38 ~~~~~vLDlGCGtG~~~~~l~~~~~~~~~~v~giD~S~~ml-~~A~~~~~~~~~~~---~~~~~~~d~~~~~~~~~d~i~ 113 (225)
T d1im8a_ 38 TADSNVYDLGCSRGAATLSARRNINQPNVKIIGIDNSQPMV-ERCRQHIAAYHSEI---PVEILCNDIRHVEIKNASMVI 113 (225)
T ss_dssp CTTCEEEEESCTTCHHHHHHHHTCCCSSCEEEEECSCHHHH-HHHHHHHHTSCCSS---CEEEECSCTTTCCCCSEEEEE
T ss_pred CCCCEEEEeccchhhHHHHHHHhhcCCCCceEEeCCCHHHH-HHHHHHhHhhcccc---hhhhccchhhccccccceeeE
Confidence 477899999999999999998753 77999999999998 78887766554422 334444555566667899999
Q ss_pred EcccccCCcChHHHHHHHHHHHHhcCCCCceEeec
Q 026036 153 ASDILLYVKQYSNLIKSLSVLLKSYKPKDSQVGHL 187 (244)
Q Consensus 153 ~~~~l~~~~~~~~l~~~l~~~~~~lk~gG~~~~~~ 187 (244)
++.++ ++.+.++..+.++++++.|||||.+++..
T Consensus 114 ~~~~l-~~~~~~d~~~~l~~i~~~LkpgG~li~~~ 147 (225)
T d1im8a_ 114 LNFTL-QFLPPEDRIALLTKIYEGLNPNGVLVLSE 147 (225)
T ss_dssp EESCG-GGSCGGGHHHHHHHHHHHEEEEEEEEEEE
T ss_pred Eeeec-cccChhhHHHHHHHHHHhCCCCceeeccc
Confidence 99998 55566777899999999999999999873
|
| >d1dusa_ c.66.1.4 (A:) Hypothetical protein MJ0882 {Archaeon Methanococcus jannaschii [TaxId: 2190]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Hypothetical protein MJ0882 domain: Hypothetical protein MJ0882 species: Archaeon Methanococcus jannaschii [TaxId: 2190]
Probab=99.78 E-value=2.6e-18 Score=132.04 Aligned_cols=137 Identities=15% Similarity=0.068 Sum_probs=96.4
Q ss_pred CCceEEEEecccCCCCcceeechHHHHHHHHhhccCcccCCeEEEeCCCCcHHHHHHHHhCCCeEEEEeCChHHHHHHHH
Q 026036 39 PEMELVIREFAFHQLNANFLWPGTFSFAEWLMHHREWIERRRCIELGSGTGALAIFLRKAMNLDITTSDYNDQEIEDNIA 118 (244)
Q Consensus 39 ~~~~~~~~~~~~~~~~~~~~w~~~~~l~~~~~~~~~~~~~~~VLdlG~G~G~~~~~~a~~~~~~v~~~D~~~~~l~~~~~ 118 (244)
.|.++.+...+.-.. ...+.+++..|.+. ....++.+|||+|||+|.+++.++.. +.+|+++|+|+.++ +.++
T Consensus 19 ~g~~~~~~t~~gvF~-~~~~d~~t~lLi~~----l~~~~~~~VLDiGcG~G~~~~~la~~-~~~v~~iD~s~~~i-~~a~ 91 (194)
T d1dusa_ 19 RGKKLKFKTDSGVFS-YGKVDKGTKILVEN----VVVDKDDDILDLGCGYGVIGIALADE-VKSTTMADINRRAI-KLAK 91 (194)
T ss_dssp TTEEEEEEEETTSTT-TTSCCHHHHHHHHH----CCCCTTCEEEEETCTTSHHHHHHGGG-SSEEEEEESCHHHH-HHHH
T ss_pred CCeeEEEEcCCCccC-CCCcCHHHHHHHHh----CCcCCCCeEEEEeecCChhHHHHHhh-ccccceeeeccccc-hhHH
Confidence 466666655431111 12234556555554 45567889999999999999999875 67999999999987 8899
Q ss_pred HhHHhcCCCCCcceEeeecCCCC-CCCCCCccEEEEcccccCCcChHHHHHHHHHHHHhcCCCCceEee
Q 026036 119 YNSTTNGITPALPHIKHSWGDAF-PIPNPDWDLILASDILLYVKQYSNLIKSLSVLLKSYKPKDSQVGH 186 (244)
Q Consensus 119 ~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~fD~I~~~~~l~~~~~~~~l~~~l~~~~~~lk~gG~~~~~ 186 (244)
+|+..++++.. .+.+.+++.. ...+++||+|+++.++|.. .....+.++.+.+.|||||++++.
T Consensus 92 ~n~~~~~l~~~--~i~~~~~d~~~~~~~~~fD~Ii~~~p~~~~--~~~~~~~l~~~~~~LkpgG~l~i~ 156 (194)
T d1dusa_ 92 ENIKLNNLDNY--DIRVVHSDLYENVKDRKYNKIITNPPIRAG--KEVLHRIIEEGKELLKDNGEIWVV 156 (194)
T ss_dssp HHHHHTTCTTS--CEEEEECSTTTTCTTSCEEEEEECCCSTTC--HHHHHHHHHHHHHHEEEEEEEEEE
T ss_pred HHHHHhCCccc--eEEEEEcchhhhhccCCceEEEEcccEEec--chhhhhHHHHHHHhcCcCcEEEEE
Confidence 99988887431 2333333332 3345689999999886432 334557899999999999988765
|
| >d1ve3a1 c.66.1.43 (A:2-227) Hypothetical protein PH0226 {Archaeon Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: CAC2371-like domain: Hypothetical protein PH0226 species: Archaeon Pyrococcus horikoshii [TaxId: 53953]
Probab=99.78 E-value=1.3e-18 Score=136.21 Aligned_cols=117 Identities=14% Similarity=0.231 Sum_probs=88.4
Q ss_pred HHHHHHhhccCcccCCeEEEeCCCCcHHHHHHHHhCCCeEEEEeCChHHHHHHHHHhHHhcCCCCCcceEeeecCCCCCC
Q 026036 64 SFAEWLMHHREWIERRRCIELGSGTGALAIFLRKAMNLDITTSDYNDQEIEDNIAYNSTTNGITPALPHIKHSWGDAFPI 143 (244)
Q Consensus 64 ~l~~~~~~~~~~~~~~~VLdlG~G~G~~~~~~a~~~~~~v~~~D~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 143 (244)
.+..++.+.. .++.+|||||||+|.++..+++. +.+|+|+|+|++|+ +.++++....+. .+..+..+. ..+++
T Consensus 26 ~~~~~~~~~l--~~~~~ILDiGcG~G~~~~~la~~-~~~v~giD~S~~~i-~~ak~~~~~~~~--~~~~~~~d~-~~l~~ 98 (226)
T d1ve3a1 26 TLEPLLMKYM--KKRGKVLDLACGVGGFSFLLEDY-GFEVVGVDISEDMI-RKAREYAKSRES--NVEFIVGDA-RKLSF 98 (226)
T ss_dssp HHHHHHHHSC--CSCCEEEEETCTTSHHHHHHHHT-TCEEEEEESCHHHH-HHHHHHHHHTTC--CCEEEECCT-TSCCS
T ss_pred HHHHHHHHhc--CCCCEEEEECCCcchhhhhHhhh-hcccccccccccch-hhhhhhhccccc--ccccccccc-ccccc
Confidence 3444444443 36779999999999999999876 77999999999998 777766655443 223333333 33567
Q ss_pred CCCCccEEEEcccccCCcChHHHHHHHHHHHHhcCCCCceEeecc
Q 026036 144 PNPDWDLILASDILLYVKQYSNLIKSLSVLLKSYKPKDSQVGHLT 188 (244)
Q Consensus 144 ~~~~fD~I~~~~~l~~~~~~~~l~~~l~~~~~~lk~gG~~~~~~~ 188 (244)
.+++||+|+|.+++ ++....++.++++++.++|||||++++...
T Consensus 99 ~~~~fD~I~~~~~l-~~~~~~d~~~~l~~i~~~LkpgG~lii~~~ 142 (226)
T d1ve3a1 99 EDKTFDYVIFIDSI-VHFEPLELNQVFKEVRRVLKPSGKFIMYFT 142 (226)
T ss_dssp CTTCEEEEEEESCG-GGCCHHHHHHHHHHHHHHEEEEEEEEEEEE
T ss_pred cCcCceEEEEecch-hhCChhHHHHHHHHHHHHcCcCcEEEEEEc
Confidence 77899999999999 554556788999999999999999988743
|
| >d2nxca1 c.66.1.39 (A:1-254) PrmA-like protein TTHA0656 (TT0836) {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Ribosomal protein L11 methyltransferase PrmA domain: PrmA-like protein TTHA0656 (TT0836) species: Thermus thermophilus [TaxId: 274]
Probab=99.77 E-value=7.6e-19 Score=139.98 Aligned_cols=142 Identities=18% Similarity=0.191 Sum_probs=104.9
Q ss_pred eechHHHHHHHHhhccCcccCCeEEEeCCCCcHHHHHHHHhCCCeEEEEeCChHHHHHHHHHhHHhcCCCCCcceEeeec
Q 026036 58 LWPGTFSFAEWLMHHREWIERRRCIELGSGTGALAIFLRKAMNLDITTSDYNDQEIEDNIAYNSTTNGITPALPHIKHSW 137 (244)
Q Consensus 58 ~w~~~~~l~~~~~~~~~~~~~~~VLdlG~G~G~~~~~~a~~~~~~v~~~D~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~ 137 (244)
.-|.+..+.+++.... .+|++|||+|||+|.+++.+++. +.+|+|+|+|+.++ +.+++|+..|+++. ..+..+.
T Consensus 103 ~H~TT~l~l~~l~~~~--~~g~~VLDiGcGsG~l~i~aa~~-g~~V~gvDis~~av-~~A~~na~~n~~~~--~~~~~d~ 176 (254)
T d2nxca1 103 HHETTRLALKALARHL--RPGDKVLDLGTGSGVLAIAAEKL-GGKALGVDIDPMVL-PQAEANAKRNGVRP--RFLEGSL 176 (254)
T ss_dssp CSHHHHHHHHHHHHHC--CTTCEEEEETCTTSHHHHHHHHT-TCEEEEEESCGGGH-HHHHHHHHHTTCCC--EEEESCH
T ss_pred ccchhhHHHHHHHhhc--CccCEEEEcccchhHHHHHHHhc-CCEEEEEECChHHH-HHHHHHHHHcCCce--eEEeccc
Confidence 3356777777776554 48899999999999999988775 68999999999998 89999999998842 2232222
Q ss_pred CCCCCCCCCCccEEEEcccccCCcChHHHHHHHHHHHHhcCCCCceEeecccccCCCCCCCCCCCeEEEeeeeccCccch
Q 026036 138 GDAFPIPNPDWDLILASDILLYVKQYSNLIKSLSVLLKSYKPKDSQVGHLTKNEQGEGTEGLPWPAFLMSWRRRIGKEDE 217 (244)
Q Consensus 138 ~~~~~~~~~~fD~I~~~~~l~~~~~~~~l~~~l~~~~~~lk~gG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 217 (244)
.+ ....++||+|+++-. ...+.+.++.+.+.|||||+++++- ++ ....
T Consensus 177 ~~--~~~~~~fD~V~ani~------~~~l~~l~~~~~~~LkpGG~lilSg----------------il--------~~~~ 224 (254)
T d2nxca1 177 EA--ALPFGPFDLLVANLY------AELHAALAPRYREALVPGGRALLTG----------------IL--------KDRA 224 (254)
T ss_dssp HH--HGGGCCEEEEEEECC------HHHHHHHHHHHHHHEEEEEEEEEEE----------------EE--------GGGH
T ss_pred cc--cccccccchhhhccc------cccHHHHHHHHHHhcCCCcEEEEEe----------------cc--------hhhH
Confidence 22 233568999998633 2445688889999999999988751 11 1124
Q ss_pred hhHHHHHhhcCCeEEEeccE
Q 026036 218 TIFFTSCENAGLEVKHLGSR 237 (244)
Q Consensus 218 ~~~~~~l~~~Gf~v~~~~~~ 237 (244)
+.+.+.++++||++.+...+
T Consensus 225 ~~v~~~~~~~Gf~~~~~~~~ 244 (254)
T d2nxca1 225 PLVREAMAGAGFRPLEEAAE 244 (254)
T ss_dssp HHHHHHHHHTTCEEEEEEEE
T ss_pred HHHHHHHHHCCCEEEEEEEE
Confidence 67888999999998776543
|
| >d1xtpa_ c.66.1.42 (A:) Hypothetical protein Lmaj004091aaa (LmjF30.0810) {Leishmania major [TaxId: 5664]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: AD-003 protein-like domain: Hypothetical protein Lmaj004091aaa (LmjF30.0810) species: Leishmania major [TaxId: 5664]
Probab=99.76 E-value=2.8e-18 Score=137.26 Aligned_cols=154 Identities=10% Similarity=0.053 Sum_probs=103.3
Q ss_pred HHHhhccCcccCCeEEEeCCCCcHHHHHHHHhCCCeEEEEeCChHHHHHHHHHhHHhcCCCCCcceEeeecCCCCCCCCC
Q 026036 67 EWLMHHREWIERRRCIELGSGTGALAIFLRKAMNLDITTSDYNDQEIEDNIAYNSTTNGITPALPHIKHSWGDAFPIPNP 146 (244)
Q Consensus 67 ~~~~~~~~~~~~~~VLdlG~G~G~~~~~~a~~~~~~v~~~D~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 146 (244)
+.+++.....++.+|||+|||+|.++..++..+..+|+++|+++.|+ +.++++..... .+.....+. ..++..++
T Consensus 83 ~~fl~~l~~~~~~~vLD~GcG~G~~t~~ll~~~~~~v~~vD~s~~~l-~~a~~~~~~~~---~~~~~~~d~-~~~~~~~~ 157 (254)
T d1xtpa_ 83 RNFIASLPGHGTSRALDCGAGIGRITKNLLTKLYATTDLLEPVKHML-EEAKRELAGMP---VGKFILASM-ETATLPPN 157 (254)
T ss_dssp HHHHHTSTTCCCSEEEEETCTTTHHHHHTHHHHCSEEEEEESCHHHH-HHHHHHTTTSS---EEEEEESCG-GGCCCCSS
T ss_pred HHHHhhCCCCCCCeEEEecccCChhhHHHHhhcCceEEEEcCCHHHH-Hhhhccccccc---cceeEEccc-cccccCCC
Confidence 33444445557789999999999999988777677899999999998 67766543211 122222222 23445567
Q ss_pred CccEEEEcccccCCcChHHHHHHHHHHHHhcCCCCceEeecccccCCCCCCCCCCCeEEEeeeeccCccchhhHHHHHhh
Q 026036 147 DWDLILASDILLYVKQYSNLIKSLSVLLKSYKPKDSQVGHLTKNEQGEGTEGLPWPAFLMSWRRRIGKEDETIFFTSCEN 226 (244)
Q Consensus 147 ~fD~I~~~~~l~~~~~~~~l~~~l~~~~~~lk~gG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 226 (244)
+||+|++..++ +|...+++.++++++++.|||||.+++...............+..+ . .+.+.+.+++++
T Consensus 158 ~fD~I~~~~vl-~hl~d~d~~~~l~~~~~~LkpgG~iii~e~~~~~~~~~~d~~d~~~-------~--rs~~~~~~l~~~ 227 (254)
T d1xtpa_ 158 TYDLIVIQWTA-IYLTDADFVKFFKHCQQALTPNGYIFFKENCSTGDRFLVDKEDSSL-------T--RSDIHYKRLFNE 227 (254)
T ss_dssp CEEEEEEESCG-GGSCHHHHHHHHHHHHHHEEEEEEEEEEEEBC--CCEEEETTTTEE-------E--BCHHHHHHHHHH
T ss_pred ccceEEeeccc-cccchhhhHHHHHHHHHhcCCCcEEEEEecCCCCCcceecccCCce-------e--CCHHHHHHHHHH
Confidence 89999999999 5556677889999999999999998886433221110000001100 1 134788999999
Q ss_pred cCCeEEEec
Q 026036 227 AGLEVKHLG 235 (244)
Q Consensus 227 ~Gf~v~~~~ 235 (244)
+||++++..
T Consensus 228 aGf~ii~~~ 236 (254)
T d1xtpa_ 228 SGVRVVKEA 236 (254)
T ss_dssp HTCCEEEEE
T ss_pred cCCEEEEEE
Confidence 999987653
|
| >d1ri5a_ c.66.1.34 (A:) mRNA cap (Guanine N-7) methyltransferase {Fungus (Encephalitozoon cuniculi) [TaxId: 6035]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: mRNA cap (Guanine N-7) methyltransferase domain: mRNA cap (Guanine N-7) methyltransferase species: Fungus (Encephalitozoon cuniculi) [TaxId: 6035]
Probab=99.76 E-value=7.4e-18 Score=134.65 Aligned_cols=112 Identities=11% Similarity=0.059 Sum_probs=83.5
Q ss_pred ccCCeEEEeCCCCcHHHHHHHHhCCCeEEEEeCChHHHHHHHHHhHHhcCCCCCcceEeeecCCCCCCCCCCccEEEEcc
Q 026036 76 IERRRCIELGSGTGALAIFLRKAMNLDITTSDYNDQEIEDNIAYNSTTNGITPALPHIKHSWGDAFPIPNPDWDLILASD 155 (244)
Q Consensus 76 ~~~~~VLdlG~G~G~~~~~~a~~~~~~v~~~D~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fD~I~~~~ 155 (244)
.++++|||||||+|..+..+++.+..+|+|+|+|+.|+ +.++.+....+...++.....+.........++||+|+|..
T Consensus 23 ~~~~~VLDlGCG~G~~~~~~~~~~~~~v~GiD~S~~~l-~~A~~r~~~~~~~~~v~f~~~D~~~~~~~~~~~fD~V~~~~ 101 (252)
T d1ri5a_ 23 KRGDSVLDLGCGKGGDLLKYERAGIGEYYGVDIAEVSI-NDARVRARNMKRRFKVFFRAQDSYGRHMDLGKEFDVISSQF 101 (252)
T ss_dssp CTTCEEEEETCTTTTTHHHHHHHTCSEEEEEESCHHHH-HHHHHHHHTSCCSSEEEEEESCTTTSCCCCSSCEEEEEEES
T ss_pred CCcCEEEEecccCcHHHHHHHHcCCCeEEEecCCHHHH-HHHHHHHHhcCCCcceEEEEcchhhhcccccccceEEEEcc
Confidence 47889999999999998888887777999999999998 67776665554433333333333222122356899999999
Q ss_pred cccCC-cChHHHHHHHHHHHHhcCCCCceEeecc
Q 026036 156 ILLYV-KQYSNLIKSLSVLLKSYKPKDSQVGHLT 188 (244)
Q Consensus 156 ~l~~~-~~~~~l~~~l~~~~~~lk~gG~~~~~~~ 188 (244)
++++. .....+..+++++.+.|||||++++.++
T Consensus 102 ~l~~~~~~~~~~~~~l~~i~~~Lk~gG~~i~~~~ 135 (252)
T d1ri5a_ 102 SFHYAFSTSESLDIAQRNIARHLRPGGYFIMTVP 135 (252)
T ss_dssp CGGGGGSSHHHHHHHHHHHHHTEEEEEEEEEEEE
T ss_pred eeeecCCCHHHHHHHHHHHhceeCCCCEEEEEec
Confidence 98543 3445677999999999999999988744
|
| >d1y8ca_ c.66.1.43 (A:) Putative methyltransferase CAC2371 {Clostridium acetobutylicum [TaxId: 1488]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: CAC2371-like domain: Putative methyltransferase CAC2371 species: Clostridium acetobutylicum [TaxId: 1488]
Probab=99.76 E-value=6.5e-18 Score=134.39 Aligned_cols=105 Identities=16% Similarity=0.173 Sum_probs=80.7
Q ss_pred ccCCeEEEeCCCCcHHHHHHHHhCCCeEEEEeCChHHHHHHHHHhHHhcCCCCCcceEeeecCCCCCCCCCCccEEEEc-
Q 026036 76 IERRRCIELGSGTGALAIFLRKAMNLDITTSDYNDQEIEDNIAYNSTTNGITPALPHIKHSWGDAFPIPNPDWDLILAS- 154 (244)
Q Consensus 76 ~~~~~VLdlG~G~G~~~~~~a~~~~~~v~~~D~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fD~I~~~- 154 (244)
.++++|||||||+|.++..++++ +.+|+|+|+|+.|+ +.++++....+. ++..+..+..+ ++ ..++||+|+|.
T Consensus 36 ~~~~~vLDiGCG~G~~~~~l~~~-g~~v~GvD~S~~ml-~~A~~~~~~~~~--~v~~~~~d~~~-~~-~~~~fD~i~~~~ 109 (246)
T d1y8ca_ 36 LVFDDYLDLACGTGNLTENLCPK-FKNTWAVDLSQEML-SEAENKFRSQGL--KPRLACQDISN-LN-INRKFDLITCCL 109 (246)
T ss_dssp CCTTEEEEETCTTSTTHHHHGGG-SSEEEEECSCHHHH-HHHHHHHHHTTC--CCEEECCCGGG-CC-CSCCEEEEEECT
T ss_pred CCCCeEEEEeCcCCHHHHHHHHh-CCccEeeccchhhh-hhccccccccCc--cceeeccchhh-hc-ccccccccceee
Confidence 35679999999999999999887 67999999999998 777777666554 23344333322 22 24589999986
Q ss_pred ccccCCcChHHHHHHHHHHHHhcCCCCceEee
Q 026036 155 DILLYVKQYSNLIKSLSVLLKSYKPKDSQVGH 186 (244)
Q Consensus 155 ~~l~~~~~~~~l~~~l~~~~~~lk~gG~~~~~ 186 (244)
+++++....+++.++++++++.|||||.+++.
T Consensus 110 ~~~~~~~~~~~~~~~l~~~~~~LkpgG~~i~~ 141 (246)
T d1y8ca_ 110 DSTNYIIDSDDLKKYFKAVSNHLKEGGVFIFD 141 (246)
T ss_dssp TGGGGCCSHHHHHHHHHHHHTTEEEEEEEEEE
T ss_pred eeeeccCCHHHHHHHHHHHHHhCCCCeEEEEE
Confidence 55645556778889999999999999999875
|
| >d2p7ia1 c.66.1.41 (A:22-246) Hypothetical protein ECA1738 {Erwinia carotovora [TaxId: 554]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: UbiE/COQ5-like domain: Hypothetical protein ECA1738 species: Erwinia carotovora [TaxId: 554]
Probab=99.75 E-value=1.2e-18 Score=137.10 Aligned_cols=146 Identities=15% Similarity=0.133 Sum_probs=98.0
Q ss_pred cccCCeEEEeCCCCcHHHHHHHHhCCCeEEEEeCChHHHHHHHHHhHHhcCCCCCcceEeeecCCCCCCCCCCccEEEEc
Q 026036 75 WIERRRCIELGSGTGALAIFLRKAMNLDITTSDYNDQEIEDNIAYNSTTNGITPALPHIKHSWGDAFPIPNPDWDLILAS 154 (244)
Q Consensus 75 ~~~~~~VLdlG~G~G~~~~~~a~~~~~~v~~~D~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fD~I~~~ 154 (244)
..++.+|||||||+|.++..++.. +.+|+|+|+|++++ +.++++... .+..+..+..+ .+ .+++||+|++.
T Consensus 18 ~~~~~~VLDiGcG~G~~~~~l~~~-g~~v~giD~s~~~i-~~a~~~~~~-----~~~~~~~~~~~-~~-~~~~fD~I~~~ 88 (225)
T d2p7ia1 18 FFRPGNLLELGSFKGDFTSRLQEH-FNDITCVEASEEAI-SHAQGRLKD-----GITYIHSRFED-AQ-LPRRYDNIVLT 88 (225)
T ss_dssp GCCSSCEEEESCTTSHHHHHHTTT-CSCEEEEESCHHHH-HHHHHHSCS-----CEEEEESCGGG-CC-CSSCEEEEEEE
T ss_pred hCCCCcEEEEeCCCcHHHHHHHHc-CCeEEEEeCcHHHh-hhhhccccc-----ccccccccccc-cc-ccccccccccc
Confidence 356789999999999999999876 67899999999987 777655321 23344333322 22 25689999999
Q ss_pred ccccCCcChHHHHHHHHHHH-HhcCCCCceEeecccccCCC----------CCCCC-CCCeEEEeeeeccCccchhhHHH
Q 026036 155 DILLYVKQYSNLIKSLSVLL-KSYKPKDSQVGHLTKNEQGE----------GTEGL-PWPAFLMSWRRRIGKEDETIFFT 222 (244)
Q Consensus 155 ~~l~~~~~~~~l~~~l~~~~-~~lk~gG~~~~~~~~~~~~~----------~~~~~-~~~~~~~~~~~~~~~~~~~~~~~ 222 (244)
+++.|. ++..+.++++. ++|||||.+++.++...... ..... ........|.+.+. .+.+.+
T Consensus 89 ~vleh~---~d~~~~l~~i~~~~Lk~gG~l~i~~pn~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~---~~~l~~ 162 (225)
T d2p7ia1 89 HVLEHI---DDPVALLKRINDDWLAEGGRLFLVCPNANAVSRQIAVKMGIISHNSAVTEAEFAHGHRCTYA---LDTLER 162 (225)
T ss_dssp SCGGGC---SSHHHHHHHHHHTTEEEEEEEEEEEECTTCHHHHHHHHTTSSSSTTCCCHHHHHTTCCCCCC---HHHHHH
T ss_pred ceeEec---CCHHHHHHHHHHHhcCCCceEEEEeCCcccHHHHHHHHhhhhhhhhhcCccccceeeeeccC---HHHHHH
Confidence 999433 34458889998 78999999999866432210 00000 00011122333332 478999
Q ss_pred HHhhcCCeEEEec
Q 026036 223 SCENAGLEVKHLG 235 (244)
Q Consensus 223 ~l~~~Gf~v~~~~ 235 (244)
+++++||++++..
T Consensus 163 ~l~~~Gf~i~~~~ 175 (225)
T d2p7ia1 163 DASRAGLQVTYRS 175 (225)
T ss_dssp HHHHTTCEEEEEE
T ss_pred HHHHCCCEEEEEE
Confidence 9999999988755
|
| >d1l3ia_ c.66.1.22 (A:) Precorrin-6Y methyltransferase (CbiT) {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Precorrin-6Y methyltransferase (CbiT) domain: Precorrin-6Y methyltransferase (CbiT) species: Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]
Probab=99.74 E-value=8.6e-18 Score=128.24 Aligned_cols=123 Identities=17% Similarity=0.193 Sum_probs=95.0
Q ss_pred cceeechHHHHHHHHhhccCcccCCeEEEeCCCCcHHHHHHHHhCCCeEEEEeCChHHHHHHHHHhHHhcCCCCCcceEe
Q 026036 55 ANFLWPGTFSFAEWLMHHREWIERRRCIELGSGTGALAIFLRKAMNLDITTSDYNDQEIEDNIAYNSTTNGITPALPHIK 134 (244)
Q Consensus 55 ~~~~w~~~~~l~~~~~~~~~~~~~~~VLdlG~G~G~~~~~~a~~~~~~v~~~D~~~~~l~~~~~~~~~~~~~~~~~~~~~ 134 (244)
+...-|....+...++....+.+|.+|||+|||+|.+++.+|+. +.+|+++|++++++ +.+++|+..+++..++..+.
T Consensus 11 ~~~~~~t~~eir~~il~~l~~~~g~~VLDiGcGsG~~s~~lA~~-~~~V~avD~~~~~l-~~a~~n~~~~gl~~~v~~~~ 88 (186)
T d1l3ia_ 11 PSVPGPTAMEVRCLIMCLAEPGKNDVAVDVGCGTGGVTLELAGR-VRRVYAIDRNPEAI-STTEMNLQRHGLGDNVTLME 88 (186)
T ss_dssp TTSCCCCCHHHHHHHHHHHCCCTTCEEEEESCTTSHHHHHHHTT-SSEEEEEESCHHHH-HHHHHHHHHTTCCTTEEEEE
T ss_pred CCCCCCChHHHHHHHHHhcCCCCCCEEEEEECCeEccccccccc-ceEEEEecCCHHHH-HHHHHHHHHcCCCcceEEEE
Confidence 34444566667666666677889999999999999999999876 67999999999997 89999999999876665554
Q ss_pred eecCCCCCCCCCCccEEEEcccccCCcChHHHHHHHHHHHHhcCCCCceEee
Q 026036 135 HSWGDAFPIPNPDWDLILASDILLYVKQYSNLIKSLSVLLKSYKPKDSQVGH 186 (244)
Q Consensus 135 ~~~~~~~~~~~~~fD~I~~~~~l~~~~~~~~l~~~l~~~~~~lk~gG~~~~~ 186 (244)
.+..+. ....+.||.|++.... . ...+.++.+.+.|||||++++.
T Consensus 89 gda~~~-~~~~~~~D~v~~~~~~-~-----~~~~~~~~~~~~LkpgG~lvi~ 133 (186)
T d1l3ia_ 89 GDAPEA-LCKIPDIDIAVVGGSG-G-----ELQEILRIIKDKLKPGGRIIVT 133 (186)
T ss_dssp SCHHHH-HTTSCCEEEEEESCCT-T-----CHHHHHHHHHHTEEEEEEEEEE
T ss_pred Cchhhc-ccccCCcCEEEEeCcc-c-----cchHHHHHHHHHhCcCCEEEEE
Confidence 433222 2334689999997765 2 2337889999999999987765
|
| >d2i6ga1 c.66.1.44 (A:1-198) Putative methyltransferase TehB {Salmonella typhimurium [TaxId: 90371]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: TehB-like domain: Putative methyltransferase TehB species: Salmonella typhimurium [TaxId: 90371]
Probab=99.74 E-value=2.1e-17 Score=127.20 Aligned_cols=105 Identities=17% Similarity=0.311 Sum_probs=82.4
Q ss_pred cCCeEEEeCCCCcHHHHHHHHhCCCeEEEEeCChHHHHHHHHHhHHhcCCCCCcceEeeecCCCCC-CCCCCccEEEEcc
Q 026036 77 ERRRCIELGSGTGALAIFLRKAMNLDITTSDYNDQEIEDNIAYNSTTNGITPALPHIKHSWGDAFP-IPNPDWDLILASD 155 (244)
Q Consensus 77 ~~~~VLdlG~G~G~~~~~~a~~~~~~v~~~D~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~fD~I~~~~ 155 (244)
++.+|||||||+|..+..++++ +.+|+++|+|+.++ +.++++....+++ .+.....+... ..+++||+|++..
T Consensus 30 ~~grvLDiGcG~G~~~~~la~~-g~~v~gvD~s~~~l-~~a~~~~~~~~~~----~~~~~~~d~~~~~~~~~fD~I~~~~ 103 (198)
T d2i6ga1 30 APGRTLDLGCGNGRNSLYLAAN-GYDVTAWDKNPASM-ANLERIKAAEGLD----NLQTDLVDLNTLTFDGEYDFILSTV 103 (198)
T ss_dssp CSCEEEEETCTTSHHHHHHHHT-TCEEEEEESCHHHH-HHHHHHHHHTTCT----TEEEEECCTTTCCCCCCEEEEEEES
T ss_pred CCCcEEEECCCCCHHHHHHHHH-hhhhccccCcHHHH-HHHHHHhhhcccc----chhhhheecccccccccccEEEEee
Confidence 4459999999999999999887 78999999999998 7777777766662 23333333222 2357899999999
Q ss_pred cccCCcChHHHHHHHHHHHHhcCCCCceEeecc
Q 026036 156 ILLYVKQYSNLIKSLSVLLKSYKPKDSQVGHLT 188 (244)
Q Consensus 156 ~l~~~~~~~~l~~~l~~~~~~lk~gG~~~~~~~ 188 (244)
++ ++...+.+.+.++++++.|+|||++++...
T Consensus 104 ~~-~~~~~~~~~~~l~~~~~~L~pgG~~~~~~~ 135 (198)
T d2i6ga1 104 VM-MFLEAQTIPGLIANMQRCTKPGGYNLIVAA 135 (198)
T ss_dssp CG-GGSCTTHHHHHHHHHHHTEEEEEEEEEEEE
T ss_pred ee-ecCCHHHHHHHHHHHHHHcCCCcEEEEEEe
Confidence 98 555556778999999999999999888743
|
| >d2b3ta1 c.66.1.30 (A:2-275) N5-glutamine methyltransferase, HemK {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: N5-glutamine methyltransferase, HemK domain: N5-glutamine methyltransferase, HemK species: Escherichia coli [TaxId: 562]
Probab=99.73 E-value=7.2e-19 Score=141.28 Aligned_cols=198 Identities=14% Similarity=0.168 Sum_probs=137.3
Q ss_pred CcccCCCCCCccCCCCCCCcccccccccceeeeecccCCceEEEEecccCCC------CcceeechHHHHHHHHhhccCc
Q 026036 2 DVALFSPSSLFAEEDDVTVDEETMETCNGYVERPHQFPEMELVIREFAFHQL------NANFLWPGTFSFAEWLMHHREW 75 (244)
Q Consensus 2 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~w~~~~~l~~~~~~~~~~ 75 (244)
++++.++++++..++...++ +....+..++.|+....+..+.+....+++. +-....|.++.++++++....
T Consensus 29 ~~l~~~~~~~~~~~~~~~~~-~~~~~~~~~~~rr~~g~PlqYI~G~~~F~~~~~~v~~~VlIPRpeTE~lv~~~l~~~~- 106 (274)
T d2b3ta1 29 HVTGRGRTFILAFGETQLTD-EQCQQLDALLTRRRDGEPIAHLTGVREFWSLPLFVSPATLIPRPDTECLVEQALARLP- 106 (274)
T ss_dssp HHHTCCHHHHHHTTTCBCCH-HHHHHHHHHHHHHHTTCCHHHHSCEEEETTEEEECCTTSCCCCTTHHHHHHHHHHHSC-
T ss_pred HHhCcCHHHHhhCCCCCCCH-HHHHHHHHHHHHHhcCcChhhhcCcEEEeeeEEEEeccccccccchhhhhhhHhhhhc-
Confidence 45667777888888777776 4555666666665444434444433333221 136677899999998876543
Q ss_pred ccCCeEEEeCCCCcHHHHHHHHhC-CCeEEEEeCChHHHHHHHHHhHHhcCCCCCcceEeeecCCCCCCCCCCccEEEEc
Q 026036 76 IERRRCIELGSGTGALAIFLRKAM-NLDITTSDYNDQEIEDNIAYNSTTNGITPALPHIKHSWGDAFPIPNPDWDLILAS 154 (244)
Q Consensus 76 ~~~~~VLdlG~G~G~~~~~~a~~~-~~~v~~~D~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fD~I~~~ 154 (244)
..+.+|||+|||+|.+++.++... ..+|+++|+|+.++ +.+++|+..++++ ++..+..++.+. ....+||+|+||
T Consensus 107 ~~~~~vlDlGtGSG~I~i~la~~~p~~~v~avDis~~Al-~~A~~Na~~~~~~-~v~~~~~d~~~~--~~~~~fDlIvsN 182 (274)
T d2b3ta1 107 EQPCRILDLGTGTGAIALALASERPDCEIIAVDRMPDAV-SLAQRNAQHLAIK-NIHILQSDWFSA--LAGQQFAMIVSN 182 (274)
T ss_dssp SSCCEEEEETCTTSHHHHHHHHHCTTSEEEEECSSHHHH-HHHHHHHHHHTCC-SEEEECCSTTGG--GTTCCEEEEEEC
T ss_pred ccccceeeeehhhhHHHHHHHhhCCcceeeeccchhHHH-hHHHHHHHHhCcc-cceeeecccccc--cCCCceeEEEec
Confidence 356789999999999999998877 78999999999998 9999999998883 355555455443 234689999999
Q ss_pred ccccCCcC----------------------hHHHHHHHHHHHHhcCCCCceEeecccccCCCCCCCCCCCeEEEeeeecc
Q 026036 155 DILLYVKQ----------------------YSNLIKSLSVLLKSYKPKDSQVGHLTKNEQGEGTEGLPWPAFLMSWRRRI 212 (244)
Q Consensus 155 ~~l~~~~~----------------------~~~l~~~l~~~~~~lk~gG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 212 (244)
.+...... .....+.+..+.+.|+|||.+++- +..
T Consensus 183 PPYi~~~~~~~~~~v~~~eP~~AL~~g~dGl~~~~~i~~~a~~~L~~~G~l~lE---------------------ig~-- 239 (274)
T d2b3ta1 183 PPYIDEQDPHLQQGDVRFEPLTALVAADSGMADIVHIIEQSRNALVSGGFLLLE---------------------HGW-- 239 (274)
T ss_dssp CCCBCTTCHHHHSSGGGSSCSTTTBCHHHHTHHHHHHHHHHGGGEEEEEEEEEE---------------------CCS--
T ss_pred chhhhhhhhcccccccccchhhhcccccccchHHHHHHHHHHHhcCCCCEEEEE---------------------ECc--
Confidence 88532211 122446778888999999987764 111
Q ss_pred CccchhhHHHHHhhcCCe
Q 026036 213 GKEDETIFFTSCENAGLE 230 (244)
Q Consensus 213 ~~~~~~~~~~~l~~~Gf~ 230 (244)
.......+++++.||.
T Consensus 240 --~q~~~v~~~l~~~gf~ 255 (274)
T d2b3ta1 240 --QQGEAVRQAFILAGYH 255 (274)
T ss_dssp --SCHHHHHHHHHHTTCT
T ss_pred --hHHHHHHHHHHHCCCC
Confidence 1135777889999996
|
| >d1tw3a2 c.66.1.12 (A:99-351) Carminomycin 4-O-methyltransferase {Streptomyces peucetius [TaxId: 1950]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Plant O-methyltransferase, C-terminal domain domain: Carminomycin 4-O-methyltransferase species: Streptomyces peucetius [TaxId: 1950]
Probab=99.73 E-value=4.2e-18 Score=136.21 Aligned_cols=156 Identities=15% Similarity=0.205 Sum_probs=105.1
Q ss_pred cCcccCCeEEEeCCCCcHHHHHHHHhC-CCeEEEEeCChHHHHHHHHHhHHhcCCCCCcceEeeecCCCCCCCCCCccEE
Q 026036 73 REWIERRRCIELGSGTGALAIFLRKAM-NLDITTSDYNDQEIEDNIAYNSTTNGITPALPHIKHSWGDAFPIPNPDWDLI 151 (244)
Q Consensus 73 ~~~~~~~~VLdlG~G~G~~~~~~a~~~-~~~v~~~D~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fD~I 151 (244)
.+..+.++|||||||+|..+..+++.. ..+++++|++ +++ +.++++....++..++..+..+. ......+||+|
T Consensus 76 ~d~~~~~~VLDvGcG~G~~~~~la~~~p~~~~~~~D~~-~~~-~~a~~~~~~~~~~~rv~~~~~D~---~~~~~~~~D~v 150 (253)
T d1tw3a2 76 YDWTNVRHVLDVGGGKGGFAAAIARRAPHVSATVLEMA-GTV-DTARSYLKDEGLSDRVDVVEGDF---FEPLPRKADAI 150 (253)
T ss_dssp SCCTTCSEEEEETCTTSHHHHHHHHHCTTCEEEEEECT-THH-HHHHHHHHHTTCTTTEEEEECCT---TSCCSSCEEEE
T ss_pred cCCccCCEEEEeCCCCCHHHHHHHHhcceeEEEEccCH-HHH-HHHHHHHHHhhcccchhhccccc---hhhcccchhhe
Confidence 344566899999999999999999887 6789999984 466 77777777777765655554443 33334579999
Q ss_pred EEcccccCCcChHHHHHHHHHHHHhcCCCCceEeecccccCCCCC--CCC-CCCeEEEeeeeccCccchhhHHHHHhhcC
Q 026036 152 LASDILLYVKQYSNLIKSLSVLLKSYKPKDSQVGHLTKNEQGEGT--EGL-PWPAFLMSWRRRIGKEDETIFFTSCENAG 228 (244)
Q Consensus 152 ~~~~~l~~~~~~~~l~~~l~~~~~~lk~gG~~~~~~~~~~~~~~~--~~~-~~~~~~~~~~~~~~~~~~~~~~~~l~~~G 228 (244)
+++.+++ +...++..++|+++++.|||||++++........... ... .+-..+.....+. .+.+++.++++++|
T Consensus 151 ~~~~vlh-~~~d~~~~~~L~~~~~~LkPGG~l~i~e~~~~~~~~~~~~~~~~dl~~~~~~~g~~--rt~~e~~~ll~~AG 227 (253)
T d1tw3a2 151 ILSFVLL-NWPDHDAVRILTRCAEALEPGGRILIHERDDLHENSFNEQFTELDLRMLVFLGGAL--RTREKWDGLAASAG 227 (253)
T ss_dssp EEESCGG-GSCHHHHHHHHHHHHHTEEEEEEEEEEECCBCGGGCCSHHHHHHHHHHHHHHSCCC--CBHHHHHHHHHHTT
T ss_pred eeccccc-cCCchhhHHHHHHHHHhcCCCcEEEEEeccCCCCCcchhHHHHhhHHHHhhCCCcC--CCHHHHHHHHHHCC
Confidence 9999994 4455667789999999999999998874322111100 000 0000000000011 13578999999999
Q ss_pred CeEEEecc
Q 026036 229 LEVKHLGS 236 (244)
Q Consensus 229 f~v~~~~~ 236 (244)
|+++++..
T Consensus 228 f~~~~v~~ 235 (253)
T d1tw3a2 228 LVVEEVRQ 235 (253)
T ss_dssp EEEEEEEE
T ss_pred CeEEEEEE
Confidence 99888753
|
| >d1wzna1 c.66.1.43 (A:1-251) Hypothetical methyltransferase PH1305 {Archaeon Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: CAC2371-like domain: Hypothetical methyltransferase PH1305 species: Archaeon Pyrococcus horikoshii [TaxId: 53953]
Probab=99.72 E-value=1.6e-17 Score=132.33 Aligned_cols=107 Identities=14% Similarity=0.189 Sum_probs=82.4
Q ss_pred CcccCCeEEEeCCCCcHHHHHHHHhCCCeEEEEeCChHHHHHHHHHhHHhcCCCCCcceEeeecCCCCCCCCCCccEEEE
Q 026036 74 EWIERRRCIELGSGTGALAIFLRKAMNLDITTSDYNDQEIEDNIAYNSTTNGITPALPHIKHSWGDAFPIPNPDWDLILA 153 (244)
Q Consensus 74 ~~~~~~~VLdlG~G~G~~~~~~a~~~~~~v~~~D~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fD~I~~ 153 (244)
...++++|||||||+|..+..+++. +.+|+|+|+|+.|+ +.++++...++. ++..+..+.. .+++. ++||+|+|
T Consensus 38 ~~~~~~~iLDiGcGtG~~~~~l~~~-~~~v~gvD~s~~mi-~~a~~~~~~~~~--~i~~~~~d~~-~l~~~-~~fD~I~~ 111 (251)
T d1wzna1 38 AKREVRRVLDLACGTGIPTLELAER-GYEVVGLDLHEEML-RVARRKAKERNL--KIEFLQGDVL-EIAFK-NEFDAVTM 111 (251)
T ss_dssp CSSCCCEEEEETCTTCHHHHHHHHT-TCEEEEEESCHHHH-HHHHHHHHHTTC--CCEEEESCGG-GCCCC-SCEEEEEE
T ss_pred cCCCCCEEEEeCCCCCccchhhccc-ceEEEEEeeccccc-cccccccccccc--cchheehhhh-hcccc-cccchHhh
Confidence 4446679999999999999999887 67999999999998 888888776655 2333333332 23433 58999999
Q ss_pred cccccCCcChHHHHHHHHHHHHhcCCCCceEee
Q 026036 154 SDILLYVKQYSNLIKSLSVLLKSYKPKDSQVGH 186 (244)
Q Consensus 154 ~~~l~~~~~~~~l~~~l~~~~~~lk~gG~~~~~ 186 (244)
....+++...+++.+.|++++++|||||++++.
T Consensus 112 ~~~~~~~~~~~~~~~~L~~~~~~LkpgG~lii~ 144 (251)
T d1wzna1 112 FFSTIMYFDEEDLRKLFSKVAEALKPGGVFITD 144 (251)
T ss_dssp CSSGGGGSCHHHHHHHHHHHHHHEEEEEEEEEE
T ss_pred hhhhhhcCChHHHHHHHHHHHHHcCCCcEEEEE
Confidence 754335556678889999999999999999885
|
| >d1vlma_ c.66.1.41 (A:) Possible histamine N-methyltransferase TM1293 {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: UbiE/COQ5-like domain: Possible histamine N-methyltransferase TM1293 species: Thermotoga maritima [TaxId: 2336]
Probab=99.72 E-value=2.3e-18 Score=133.62 Aligned_cols=141 Identities=16% Similarity=0.196 Sum_probs=93.7
Q ss_pred ccCCeEEEeCCCCcHHHHHHHHhCCCeEEEEeCChHHHHHHHHHhHHhcCCCCCcceEeeecCCCCCCCCCCccEEEEcc
Q 026036 76 IERRRCIELGSGTGALAIFLRKAMNLDITTSDYNDQEIEDNIAYNSTTNGITPALPHIKHSWGDAFPIPNPDWDLILASD 155 (244)
Q Consensus 76 ~~~~~VLdlG~G~G~~~~~~a~~~~~~v~~~D~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fD~I~~~~ 155 (244)
.++.+|||||||+|.++..++ +++|+|+|+.++ +.++++ ++ ..+.. ..+.+++.+++||+|+++.
T Consensus 35 ~~~~~vLDiGcG~G~~~~~~~-----~~~giD~s~~~~-~~a~~~----~~----~~~~~-d~~~l~~~~~~fD~I~~~~ 99 (208)
T d1vlma_ 35 LPEGRGVEIGVGTGRFAVPLK-----IKIGVEPSERMA-EIARKR----GV----FVLKG-TAENLPLKDESFDFALMVT 99 (208)
T ss_dssp CCSSCEEEETCTTSTTHHHHT-----CCEEEESCHHHH-HHHHHT----TC----EEEEC-BTTBCCSCTTCEEEEEEES
T ss_pred CCCCeEEEECCCCcccccccc-----eEEEEeCChhhc-cccccc----cc----ccccc-ccccccccccccccccccc
Confidence 356799999999998876662 478999999987 665543 22 23332 2244567778999999999
Q ss_pred cccCCcChHHHHHHHHHHHHhcCCCCceEeecccccCCCCCCC--CCCCeEEEeeeeccCccchhhHHHHHhhcCCeEEE
Q 026036 156 ILLYVKQYSNLIKSLSVLLKSYKPKDSQVGHLTKNEQGEGTEG--LPWPAFLMSWRRRIGKEDETIFFTSCENAGLEVKH 233 (244)
Q Consensus 156 ~l~~~~~~~~l~~~l~~~~~~lk~gG~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gf~v~~ 233 (244)
++++. +++.+.+++++++|+|||++++.++.......... .........+ .+.. +.+++.++++++||++.+
T Consensus 100 ~l~h~---~d~~~~l~~~~~~L~pgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~--s~~~l~~~l~~~Gf~~i~ 173 (208)
T d1vlma_ 100 TICFV---DDPERALKEAYRILKKGGYLIVGIVDRESFLGREYEKNKEKSVFYKN-ARFF--STEELMDLMRKAGFEEFK 173 (208)
T ss_dssp CGGGS---SCHHHHHHHHHHHEEEEEEEEEEEECSSSHHHHHHHHTTTC-CCSTT-CCCC--CHHHHHHHHHHTTCEEEE
T ss_pred ccccc---cccccchhhhhhcCCCCceEEEEecCCcchhHHhhhhcccccccccc-ccCC--CHHHHHHHHHHcCCeEEE
Confidence 99443 34558999999999999999988655432210000 0000011111 1122 257899999999999887
Q ss_pred eccE
Q 026036 234 LGSR 237 (244)
Q Consensus 234 ~~~~ 237 (244)
+...
T Consensus 174 v~~~ 177 (208)
T d1vlma_ 174 VVQT 177 (208)
T ss_dssp EEEE
T ss_pred EEEE
Confidence 7654
|
| >d2bzga1 c.66.1.36 (A:17-245) Thiopurine S-methyltransferase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Thiopurine S-methyltransferase domain: Thiopurine S-methyltransferase species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.71 E-value=7.1e-17 Score=127.05 Aligned_cols=126 Identities=8% Similarity=-0.068 Sum_probs=89.8
Q ss_pred HHHHHHHHhhccCcccCCeEEEeCCCCcHHHHHHHHhCCCeEEEEeCChHHHHHHHHHhHHhcCC---------------
Q 026036 62 TFSFAEWLMHHREWIERRRCIELGSGTGALAIFLRKAMNLDITTSDYNDQEIEDNIAYNSTTNGI--------------- 126 (244)
Q Consensus 62 ~~~l~~~~~~~~~~~~~~~VLdlG~G~G~~~~~~a~~~~~~v~~~D~~~~~l~~~~~~~~~~~~~--------------- 126 (244)
...|.+++.+.....++.||||+|||+|..+..+|+. +.+|+|+|+|+.++ +.++++......
T Consensus 30 ~~~l~~~~~~~l~~~~~~rvLd~GCG~G~~a~~LA~~-G~~V~gvD~S~~ai-~~a~~~~~~~~~~~~~~~~~~~~~~~~ 107 (229)
T d2bzga1 30 HQLLKKHLDTFLKGKSGLRVFFPLCGKAVEMKWFADR-GHSVVGVEISELGI-QEFFTEQNLSYSEEPITEIPGTKVFKS 107 (229)
T ss_dssp CHHHHHHHHHHHTTCCSCEEEETTCTTCTHHHHHHHT-TCEEEEECSCHHHH-HHHHHHTTCCEEEEECTTSTTCEEEEE
T ss_pred CHHHHHHHHHhcCCCCCCEEEEeCCCCcHHHHHHHhC-CCcEEEEeCCHHHH-HHHHHHhhccccccchhcccccceeee
Confidence 4566677766666668899999999999999999986 77999999999998 555543321110
Q ss_pred -CCCcceEeeecCCCCCCCCCCccEEEEcccccCCcChHHHHHHHHHHHHhcCCCCceEeecccc
Q 026036 127 -TPALPHIKHSWGDAFPIPNPDWDLILASDILLYVKQYSNLIKSLSVLLKSYKPKDSQVGHLTKN 190 (244)
Q Consensus 127 -~~~~~~~~~~~~~~~~~~~~~fD~I~~~~~l~~~~~~~~l~~~l~~~~~~lk~gG~~~~~~~~~ 190 (244)
...+..+..+..+..+...+.||+|+...++ ++...+...+.++++.++|||||++++.....
T Consensus 108 ~~~~v~~~~~d~~~l~~~~~~~fd~i~~~~~l-~~~~~~~r~~~~~~~~~~LkpgG~~~l~~~~~ 171 (229)
T d2bzga1 108 SSGNISLYCCSIFDLPRTNIGKFDMIWDRGAL-VAINPGDRKCYADTMFSLLGKKFQYLLCVLSY 171 (229)
T ss_dssp TTSSEEEEESCGGGGGGSCCCCEEEEEESSST-TTSCGGGHHHHHHHHHHTEEEEEEEEEEEEEC
T ss_pred cCCcEEEEEcchhhccccccCceeEEEEEEEE-EeccchhhHHHHHHHHhhcCCcceEEEEEccc
Confidence 0112222222222223445689999999888 66666777899999999999999988775444
|
| >d1g8sa_ c.66.1.3 (A:) Fibrillarin homologue {Archaeon Methanococcus jannaschii [TaxId: 2190]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Fibrillarin homologue domain: Fibrillarin homologue species: Archaeon Methanococcus jannaschii [TaxId: 2190]
Probab=99.68 E-value=1.1e-16 Score=125.65 Aligned_cols=158 Identities=8% Similarity=-0.059 Sum_probs=102.7
Q ss_pred ceeechHH-HHHHHHhh---ccCcccCCeEEEeCCCCcHHHHHHHHhC-CCeEEEEeCChHHHHHHHHHhHHhcCCCCCc
Q 026036 56 NFLWPGTF-SFAEWLMH---HREWIERRRCIELGSGTGALAIFLRKAM-NLDITTSDYNDQEIEDNIAYNSTTNGITPAL 130 (244)
Q Consensus 56 ~~~w~~~~-~l~~~~~~---~~~~~~~~~VLdlG~G~G~~~~~~a~~~-~~~v~~~D~~~~~l~~~~~~~~~~~~~~~~~ 130 (244)
...|+.-. .|+..+.. ...+.+|.+|||||||+|..+..++... ..+|+|+|+|+.|+ +.++.++.... .+
T Consensus 49 ~r~w~p~rsklaA~i~~gl~~l~ikpG~~VLDlGcGsG~~~~~la~~~~~g~V~aVDiS~~~i-~~a~~~a~~~~---ni 124 (230)
T d1g8sa_ 49 YRIWNPNKSKLAAAIIKGLKVMPIKRDSKILYLGASAGTTPSHVADIADKGIVYAIEYAPRIM-RELLDACAERE---NI 124 (230)
T ss_dssp EEECCTTTCHHHHHHHTTCCCCCCCTTCEEEEESCCSSHHHHHHHHHTTTSEEEEEESCHHHH-HHHHHHTTTCT---TE
T ss_pred eeeECCCccHHHHHHHhhHHhCCCCCCCEEEEeCEEcCHHHHHHHHhCCCCEEEEEeCcHHHH-HHHHHHHhhhc---cc
Confidence 33454432 45544443 3567899999999999999999999875 56899999999998 66655544332 22
Q ss_pred ceEeeecCCCCCCCCCCccEEEEcccccCCcChHHHHHHHHHHHHhcCCCCceEeecccccCCCCCCCCCCCeEEEeeee
Q 026036 131 PHIKHSWGDAFPIPNPDWDLILASDILLYVKQYSNLIKSLSVLLKSYKPKDSQVGHLTKNEQGEGTEGLPWPAFLMSWRR 210 (244)
Q Consensus 131 ~~~~~~~~~~~~~~~~~fD~I~~~~~l~~~~~~~~l~~~l~~~~~~lk~gG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 210 (244)
..+..+...+....+..+|++++...+++ .++....+.++.+.|||||.+++.......... .. .
T Consensus 125 ~~i~~d~~~~~~~~~~~~~v~~i~~~~~~---~~~~~~~l~~~~r~LKpgG~~~i~~k~~~~d~~----~~------~-- 189 (230)
T d1g8sa_ 125 IPILGDANKPQEYANIVEKVDVIYEDVAQ---PNQAEILIKNAKWFLKKGGYGMIAIKARSIDVT----KD------P-- 189 (230)
T ss_dssp EEEECCTTCGGGGTTTCCCEEEEEECCCS---TTHHHHHHHHHHHHEEEEEEEEEEEEGGGTCSS----SC------H--
T ss_pred ceEEEeeccCcccccccceeEEeeccccc---hHHHHHHHHHHHHhcccCceEEEEeeccccCCC----CC------H--
Confidence 34444444444445556787776666633 345558899999999999998887433221100 00 0
Q ss_pred ccCccchhhHHHHHhhcCCeEEEec
Q 026036 211 RIGKEDETIFFTSCENAGLEVKHLG 235 (244)
Q Consensus 211 ~~~~~~~~~~~~~l~~~Gf~v~~~~ 235 (244)
....++..+.|+++||++++..
T Consensus 190 ---~~~~~e~~~~L~~aGF~ive~i 211 (230)
T d1g8sa_ 190 ---KEIFKEQKEILEAGGFKIVDEV 211 (230)
T ss_dssp ---HHHHHHHHHHHHHHTEEEEEEE
T ss_pred ---HHHHHHHHHHHHHcCCEEEEEe
Confidence 0112455678999999987653
|
| >d2a14a1 c.66.1.15 (A:5-261) Indolethylamine N-methyltransferase, INMT {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Arylamine N-methyltransferase domain: Indolethylamine N-methyltransferase, INMT species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.68 E-value=2.9e-17 Score=131.17 Aligned_cols=151 Identities=16% Similarity=0.082 Sum_probs=98.7
Q ss_pred cccCCeEEEeCCCCcHHHHHHHHhCCCeEEEEeCChHHHHHHHHHhHHhcCCCCCcc-----------------------
Q 026036 75 WIERRRCIELGSGTGALAIFLRKAMNLDITTSDYNDQEIEDNIAYNSTTNGITPALP----------------------- 131 (244)
Q Consensus 75 ~~~~~~VLdlG~G~G~~~~~~a~~~~~~v~~~D~~~~~l~~~~~~~~~~~~~~~~~~----------------------- 131 (244)
..+|.+|||||||+|..++.++..+..+|+|+|+|+.++ +.+++++..........
T Consensus 49 ~~~g~~vLDlGcG~G~~~~~~~~~~~~~v~giD~S~~~i-~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 127 (257)
T d2a14a1 49 GLQGDTLIDIGSGPTIYQVLAACDSFQDITLSDFTDRNR-EELEKWLKKEPGAYDWTPAVKFACELEGNSGRWEEKEEKL 127 (257)
T ss_dssp SCCEEEEEESSCTTCCGGGTTGGGTEEEEEEEESCHHHH-HHHHHHHHTCTTCCCCHHHHHHHHHHTTCGGGHHHHHHHH
T ss_pred CCCCCEEEEECCCCCHhHHHHhccccCcEEEecCCHHHH-HHHHHHHhhccccchhhhHHHHHHHhccccchHHHHHHHH
Confidence 357789999999999988777766666899999999998 78887766543311000
Q ss_pred ------eEeeec-CC--CCCCCCCCccEEEEcccccCC-cChHHHHHHHHHHHHhcCCCCceEeecccccCCCCCCCCCC
Q 026036 132 ------HIKHSW-GD--AFPIPNPDWDLILASDILLYV-KQYSNLIKSLSVLLKSYKPKDSQVGHLTKNEQGEGTEGLPW 201 (244)
Q Consensus 132 ------~~~~~~-~~--~~~~~~~~fD~I~~~~~l~~~-~~~~~l~~~l~~~~~~lk~gG~~~~~~~~~~~~~~~~~~~~ 201 (244)
...... .+ ..+...++||+|++..++.+. ...++....+++++++|||||.+++........... .
T Consensus 128 ~~~~~~~~~~~~~~~~~~~~~~~~~fD~i~~~~~l~~~~~~~~~~~~~l~~i~~~LkpGG~li~~~~~~~~~~~~----~ 203 (257)
T d2a14a1 128 RAAVKRVLKCDVHLGNPLAPAVLPLADCVLTLLAMECACCSLDAYRAALCNLASLLKPGGHLVTTVTLRLPSYMV----G 203 (257)
T ss_dssp HHHEEEEEECCTTSSSTTTTCCCCCEEEEEEESCHHHHCSSHHHHHHHHHHHHTTEEEEEEEEEEEESSCCEEEE----T
T ss_pred hhhhhcccccccccccccccccCCcccEEeehhhHHHhcccHHHHHHHHHHHHhccCCCcEEEEEEeccccccee----c
Confidence 000000 01 123456789999999998332 223467789999999999999998874332111000 0
Q ss_pred CeEEEeeeeccCccchhhHHHHHhhcCCeEEEec
Q 026036 202 PAFLMSWRRRIGKEDETIFFTSCENAGLEVKHLG 235 (244)
Q Consensus 202 ~~~~~~~~~~~~~~~~~~~~~~l~~~Gf~v~~~~ 235 (244)
...+.... -+.+.+.++++++||+++++.
T Consensus 204 ---~~~~~~~~--~~~~~~~~~l~~aGf~v~~~~ 232 (257)
T d2a14a1 204 ---KREFSCVA--LEKGEVEQAVLDAGFDIEQLL 232 (257)
T ss_dssp ---TEEEECCC--CCHHHHHHHHHHTTEEEEEEE
T ss_pred ---cccccccC--CCHHHHHHHHHHCCCEEEEEE
Confidence 00011111 235889999999999988773
|
| >d2avna1 c.66.1.41 (A:1-246) Hypothetical methyltransferase TM1389 {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: UbiE/COQ5-like domain: Hypothetical methyltransferase TM1389 species: Thermotoga maritima [TaxId: 2336]
Probab=99.68 E-value=3.6e-17 Score=129.51 Aligned_cols=99 Identities=20% Similarity=0.390 Sum_probs=76.1
Q ss_pred cCCeEEEeCCCCcHHHHHHHHhCCCeEEEEeCChHHHHHHHHHhHHhcCCCCCcceEeeecCCCCCCCCCCccEEEEc-c
Q 026036 77 ERRRCIELGSGTGALAIFLRKAMNLDITTSDYNDQEIEDNIAYNSTTNGITPALPHIKHSWGDAFPIPNPDWDLILAS-D 155 (244)
Q Consensus 77 ~~~~VLdlG~G~G~~~~~~a~~~~~~v~~~D~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fD~I~~~-~ 155 (244)
++.+|||+|||+|..+..+++. +.+|+|+|+|+.|+ +.++.+...+ .+..+. +.+++++++||+|++. +
T Consensus 42 ~~~~vLDiGcG~G~~~~~l~~~-~~~v~giD~s~~~l-~~a~~~~~~~-------~~~~~~-~~l~~~~~~fD~ii~~~~ 111 (246)
T d2avna1 42 NPCRVLDLGGGTGKWSLFLQER-GFEVVLVDPSKEML-EVAREKGVKN-------VVEAKA-EDLPFPSGAFEAVLALGD 111 (246)
T ss_dssp SCCEEEEETCTTCHHHHHHHTT-TCEEEEEESCHHHH-HHHHHHTCSC-------EEECCT-TSCCSCTTCEEEEEECSS
T ss_pred CCCEEEEECCCCchhccccccc-ceEEEEeecccccc-cccccccccc-------cccccc-cccccccccccceeeecc
Confidence 6779999999999999999876 77999999999998 7776543211 223222 4467778899999986 5
Q ss_pred cccCCcChHHHHHHHHHHHHhcCCCCceEeecc
Q 026036 156 ILLYVKQYSNLIKSLSVLLKSYKPKDSQVGHLT 188 (244)
Q Consensus 156 ~l~~~~~~~~l~~~l~~~~~~lk~gG~~~~~~~ 188 (244)
++ +|. ++..++++++.++|||||.+++.++
T Consensus 112 ~~-~~~--~d~~~~l~~i~r~Lk~gG~~ii~~~ 141 (246)
T d2avna1 112 VL-SYV--ENKDKAFSEIRRVLVPDGLLIATVD 141 (246)
T ss_dssp HH-HHC--SCHHHHHHHHHHHEEEEEEEEEEEE
T ss_pred hh-hhh--hhHHHHHHHHHhhcCcCcEEEEEEC
Confidence 66 442 3445899999999999999988754
|
| >d1nv8a_ c.66.1.30 (A:) N5-glutamine methyltransferase, HemK {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: N5-glutamine methyltransferase, HemK domain: N5-glutamine methyltransferase, HemK species: Thermotoga maritima [TaxId: 2336]
Probab=99.68 E-value=1.2e-17 Score=133.78 Aligned_cols=153 Identities=16% Similarity=0.172 Sum_probs=111.5
Q ss_pred CcccCCCCCCccCCCCCCCcccccccccceeeeecccCCceEEEEecccCCC------CcceeechHHHHHHHHhhccCc
Q 026036 2 DVALFSPSSLFAEEDDVTVDEETMETCNGYVERPHQFPEMELVIREFAFHQL------NANFLWPGTFSFAEWLMHHREW 75 (244)
Q Consensus 2 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~w~~~~~l~~~~~~~~~~ 75 (244)
++++.++..|+.. +...++ +....+..++.|+....+..+.+....+++. .-....|.++.|.+++......
T Consensus 31 ~~l~~~~~~l~~~-~~~l~~-~~~~~~~~~i~rR~~~~Pl~YI~g~~~F~~~~f~v~~~vlIPRpeTE~lv~~~~~~~~~ 108 (271)
T d1nv8a_ 31 RVLGIRKEDLFLK-DLGVSP-TEEKRILELVEKRASGYPLHYILGEKEFMGLSFLVEEGVFVPRPETEELVELALELIRK 108 (271)
T ss_dssp HHHTCCGGGGCCS-SCCCCH-HHHHHHHHHHHHHHTTCCHHHHHTEEEETTEEEECCTTSCCCCTTHHHHHHHHHHHHHH
T ss_pred HHHCcCHHHHhhC-CCCCCH-HHHHHHHHHHHHhhCCCChhhhcCcEEEeeeEEEEecCccCchhhhhhhhhhhhhhhcc
Confidence 4567788888876 444555 4555666666665444333333333332221 1367888999999998876554
Q ss_pred ccCCeEEEeCCCCcHHHHHHHHhCCCeEEEEeCChHHHHHHHHHhHHhcCCCCCcceEeeecCCCCCCCCCCccEEEEcc
Q 026036 76 IERRRCIELGSGTGALAIFLRKAMNLDITTSDYNDQEIEDNIAYNSTTNGITPALPHIKHSWGDAFPIPNPDWDLILASD 155 (244)
Q Consensus 76 ~~~~~VLdlG~G~G~~~~~~a~~~~~~v~~~D~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fD~I~~~~ 155 (244)
....+|+|+|||+|.+++.+++....+|+++|+|+.++ +.+++|+..+++..++.....+|.+..+...++||+|++|.
T Consensus 109 ~~~~~vld~g~GsG~i~~~la~~~~~~v~a~Dis~~Al-~~A~~Na~~~~~~~~~~i~~~~~~~~~~~~~~~fDlIVsNP 187 (271)
T d1nv8a_ 109 YGIKTVADIGTGSGAIGVSVAKFSDAIVFATDVSSKAV-EIARKNAERHGVSDRFFVRKGEFLEPFKEKFASIEMILSNP 187 (271)
T ss_dssp HTCCEEEEESCTTSHHHHHHHHHSSCEEEEEESCHHHH-HHHHHHHHHTTCTTSEEEEESSTTGGGGGGTTTCCEEEECC
T ss_pred ccccEEEEeeeeeehhhhhhhhcccceeeechhhhhHH-HHHHHHHHHcCCCceeEEeecccccccccccCcccEEEEcc
Confidence 45568999999999999999887788999999999998 99999999999877666666677665554457899999988
Q ss_pred cc
Q 026036 156 IL 157 (244)
Q Consensus 156 ~l 157 (244)
+.
T Consensus 188 PY 189 (271)
T d1nv8a_ 188 PY 189 (271)
T ss_dssp CC
T ss_pred cc
Confidence 73
|
| >d1pjza_ c.66.1.36 (A:) Thiopurine S-methyltransferase {Pseudomonas syringae [TaxId: 317]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Thiopurine S-methyltransferase domain: Thiopurine S-methyltransferase species: Pseudomonas syringae [TaxId: 317]
Probab=99.67 E-value=5.3e-17 Score=124.31 Aligned_cols=121 Identities=5% Similarity=-0.043 Sum_probs=84.5
Q ss_pred HHHHHhhccCcccCCeEEEeCCCCcHHHHHHHHhCCCeEEEEeCChHHHHHHHHHhHHhcCCC-----------CCcceE
Q 026036 65 FAEWLMHHREWIERRRCIELGSGTGALAIFLRKAMNLDITTSDYNDQEIEDNIAYNSTTNGIT-----------PALPHI 133 (244)
Q Consensus 65 l~~~~~~~~~~~~~~~VLdlG~G~G~~~~~~a~~~~~~v~~~D~~~~~l~~~~~~~~~~~~~~-----------~~~~~~ 133 (244)
|.+++.. ....+|.||||+|||+|..+..+|++ +.+|+|+|+|+.|+ +.++++....... ..+..+
T Consensus 9 ~~~~~~~-l~~~~~~rvLd~GCG~G~~a~~la~~-G~~V~gvD~S~~~i-~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~ 85 (201)
T d1pjza_ 9 LQQYWSS-LNVVPGARVLVPLCGKSQDMSWLSGQ-GYHVVGAELSEAAV-ERYFTERGEQPHITSQGDFKVYAAPGIEIW 85 (201)
T ss_dssp HHHHHHH-HCCCTTCEEEETTTCCSHHHHHHHHH-CCEEEEEEECHHHH-HHHHHHHCSCSEEEEETTEEEEECSSSEEE
T ss_pred HHHHHHH-cCCCCCCEEEEecCcCCHHHHHHHHc-CCceEeecccHHHH-HHHHHHhccccchhhhhhhhhcccccccee
Confidence 3344333 34568899999999999999999987 78999999999998 7777665432221 011122
Q ss_pred eeecCCCCCCCCCCccEEEEcccccCCcChHHHHHHHHHHHHhcCCCCceEeeccc
Q 026036 134 KHSWGDAFPIPNPDWDLILASDILLYVKQYSNLIKSLSVLLKSYKPKDSQVGHLTK 189 (244)
Q Consensus 134 ~~~~~~~~~~~~~~fD~I~~~~~l~~~~~~~~l~~~l~~~~~~lk~gG~~~~~~~~ 189 (244)
..++.+..+.....||+|++..++ ++.........++.+++.|||||++++....
T Consensus 86 ~~d~~~l~~~~~~~~D~i~~~~~l-~~l~~~~~~~~~~~i~~~LkpgG~l~l~~~~ 140 (201)
T d1pjza_ 86 CGDFFALTARDIGHCAAFYDRAAM-IALPADMRERYVQHLEALMPQACSGLLITLE 140 (201)
T ss_dssp EECCSSSTHHHHHSEEEEEEESCG-GGSCHHHHHHHHHHHHHHSCSEEEEEEEEES
T ss_pred cccccccccccccceeEEEEEeee-EecchhhhHHHHHHHHHhcCCCcEEEEEEcc
Confidence 222222111223479999999988 5555566779999999999999998876433
|
| >d1qzza2 c.66.1.12 (A:102-357) Aclacinomycin-10-hydroxylase RdmB {Streptomyces purpurascens [TaxId: 1924]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Plant O-methyltransferase, C-terminal domain domain: Aclacinomycin-10-hydroxylase RdmB species: Streptomyces purpurascens [TaxId: 1924]
Probab=99.65 E-value=2.4e-16 Score=126.01 Aligned_cols=155 Identities=15% Similarity=0.196 Sum_probs=102.9
Q ss_pred CcccCCeEEEeCCCCcHHHHHHHHhC-CCeEEEEeCChHHHHHHHHHhHHhcCCCCCcceEeeecCCCCCCCCCCccEEE
Q 026036 74 EWIERRRCIELGSGTGALAIFLRKAM-NLDITTSDYNDQEIEDNIAYNSTTNGITPALPHIKHSWGDAFPIPNPDWDLIL 152 (244)
Q Consensus 74 ~~~~~~~VLdlG~G~G~~~~~~a~~~-~~~v~~~D~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fD~I~ 152 (244)
+.....+|||||||+|..+..++++. ..+++++|+ ++++ +.+++++...+...++..+.. +.....+.+||+|+
T Consensus 78 d~~~~~~vlDvG~G~G~~~~~l~~~~P~~~~~~~Dl-p~~~-~~a~~~~~~~~~~~ri~~~~~---d~~~~~p~~~D~v~ 152 (256)
T d1qzza2 78 DWSAVRHVLDVGGGNGGMLAAIALRAPHLRGTLVEL-AGPA-ERARRRFADAGLADRVTVAEG---DFFKPLPVTADVVL 152 (256)
T ss_dssp CCTTCCEEEEETCTTSHHHHHHHHHCTTCEEEEEEC-HHHH-HHHHHHHHHTTCTTTEEEEEC---CTTSCCSCCEEEEE
T ss_pred CCccCCEEEEECCCCCHHHHHHHHhhcCcEEEEecC-hHHH-HHHHHHHhhcCCcceeeeeee---eccccccccchhhh
Confidence 34456799999999999999999887 678999998 5565 777777777777555554443 33333345699999
Q ss_pred EcccccCCcChHHHHHHHHHHHHhcCCCCceEeecccccCCCCCCCCCCCe----EEEeeeeccCccchhhHHHHHhhcC
Q 026036 153 ASDILLYVKQYSNLIKSLSVLLKSYKPKDSQVGHLTKNEQGEGTEGLPWPA----FLMSWRRRIGKEDETIFFTSCENAG 228 (244)
Q Consensus 153 ~~~~l~~~~~~~~l~~~l~~~~~~lk~gG~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~l~~~G 228 (244)
+..+++ +.+.++..++|+++++.|||||+++|.................. ++.....+ ..+.+++.++++++|
T Consensus 153 ~~~vLh-~~~d~~~~~lL~~i~~~LkpgG~llI~d~~~~~~~~~~~~~~~~~d~~ml~~~~g~--~rt~~e~~~ll~~AG 229 (256)
T d1qzza2 153 LSFVLL-NWSDEDALTILRGCVRALEPGGRLLVLDRADVEGDGADRFFSTLLDLRMLTFMGGR--VRTRDEVVDLAGSAG 229 (256)
T ss_dssp EESCGG-GSCHHHHHHHHHHHHHHEEEEEEEEEEECCH-------HHHHHHHHHHHHHHHSCC--CCCHHHHHHHHHTTT
T ss_pred cccccc-ccCcHHHHHHHHHHHhhcCCcceeEEEEeccCCCCcccHHHHHHHHHHHHhhCCCc--cCCHHHHHHHHHHCC
Confidence 999994 44556777899999999999999998743221111000000000 00000001 113578999999999
Q ss_pred CeEEEecc
Q 026036 229 LEVKHLGS 236 (244)
Q Consensus 229 f~v~~~~~ 236 (244)
|+++++..
T Consensus 230 f~~~~~~~ 237 (256)
T d1qzza2 230 LALASERT 237 (256)
T ss_dssp EEEEEEEE
T ss_pred CceeEEEE
Confidence 99888753
|
| >d2g72a1 c.66.1.15 (A:18-280) Phenylethanolamine N-methyltransferase, PNMTase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Arylamine N-methyltransferase domain: Phenylethanolamine N-methyltransferase, PNMTase species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.64 E-value=2.1e-16 Score=126.81 Aligned_cols=151 Identities=15% Similarity=0.095 Sum_probs=96.4
Q ss_pred CcccCCeEEEeCCCCcHHHHHHHHhCCCeEEEEeCChHHHHHHHHHhHHhcCCCCC------------------------
Q 026036 74 EWIERRRCIELGSGTGALAIFLRKAMNLDITTSDYNDQEIEDNIAYNSTTNGITPA------------------------ 129 (244)
Q Consensus 74 ~~~~~~~VLdlG~G~G~~~~~~a~~~~~~v~~~D~~~~~l~~~~~~~~~~~~~~~~------------------------ 129 (244)
...+|.+|||||||+|..++..+.....+|+++|+|+.|+ +.+++++........
T Consensus 51 g~~~g~~vLDiGcG~g~~~~~~~~~~~~~v~~~D~S~~~i-~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~ 129 (263)
T d2g72a1 51 GEVSGRTLIDIGSGPTVYQLLSACSHFEDITMTDFLEVNR-QELGRWLQEEPGAFNWSMYSQHACLIEGKGECWQDKERQ 129 (263)
T ss_dssp SCSCCSEEEEETCTTCCGGGTTGGGGCSEEEEECSCHHHH-HHHHHHHTTCTTCCCCHHHHHHHHHHHCSCCCHHHHHHH
T ss_pred CCCCCcEEEEeccCCCHHHHHHhcccCCeEEEEeCCHHHH-HHHHHHHhcCcccccchhhhhhhhhhccccchhhhhHHH
Confidence 4457889999999999887666555577899999999998 777765543221100
Q ss_pred ----c-ceEeeecCC-----CCCCCCCCccEEEEcccccCC-cChHHHHHHHHHHHHhcCCCCceEeecccccCCCCCCC
Q 026036 130 ----L-PHIKHSWGD-----AFPIPNPDWDLILASDILLYV-KQYSNLIKSLSVLLKSYKPKDSQVGHLTKNEQGEGTEG 198 (244)
Q Consensus 130 ----~-~~~~~~~~~-----~~~~~~~~fD~I~~~~~l~~~-~~~~~l~~~l~~~~~~lk~gG~~~~~~~~~~~~~~~~~ 198 (244)
+ .....+... ..+...++||+|++..++.+. .+.++..+++++++++|||||.+++.......
T Consensus 130 ~~~~~~~~~~~Dv~~~~~~~~~~~~~~~fD~V~~~~~l~~i~~~~~~~~~~l~~~~~~LkPGG~li~~~~~~~~------ 203 (263)
T d2g72a1 130 LRARVKRVLPIDVHQPQPLGAGSPAPLPADALVSAFCLEAVSPDLASFQRALDHITTLLRPGGHLLLIGALEES------ 203 (263)
T ss_dssp HHHHEEEEECCCTTSSSTTCSSCSSCSSEEEEEEESCHHHHCSSHHHHHHHHHHHHTTEEEEEEEEEEEEESCC------
T ss_pred hhhhhhccccccccCCCccccCCcCcCccCeeeeHHHHHHHccCHHHHHHHHHHHHHHcCCCCEEEEecccCCc------
Confidence 0 001111111 112334579999999998322 23456789999999999999998887332211
Q ss_pred CCCCeEEEeeee-ccCccchhhHHHHHhhcCCeEEEec
Q 026036 199 LPWPAFLMSWRR-RIGKEDETIFFTSCENAGLEVKHLG 235 (244)
Q Consensus 199 ~~~~~~~~~~~~-~~~~~~~~~~~~~l~~~Gf~v~~~~ 235 (244)
.+.....+ ....-+.+.+.++++++||+++++.
T Consensus 204 ----~~~~~~~~~~~~~~t~e~v~~~l~~aGf~v~~~~ 237 (263)
T d2g72a1 204 ----WYLAGEARLTVVPVSEEEVREALVRSGYKVRDLR 237 (263)
T ss_dssp ----EEEETTEEEECCCCCHHHHHHHHHHTTEEEEEEE
T ss_pred ----ccccCCcccccCCCCHHHHHHHHHHCCCeEEEEE
Confidence 01111111 1111235889999999999988754
|
| >d2gh1a1 c.66.1.49 (A:13-293) Methyltransferase BC2162 {Bacillus cereus [TaxId: 1396]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: BC2162-like domain: Methyltransferase BC2162 species: Bacillus cereus [TaxId: 1396]
Probab=99.63 E-value=8e-16 Score=124.57 Aligned_cols=116 Identities=13% Similarity=0.156 Sum_probs=84.4
Q ss_pred HHHHhhc-cCcccCCeEEEeCCCCcHHHHHHHHhC--CCeEEEEeCChHHHHHHHHHhHHhcCCCCCcceEeeecCCCCC
Q 026036 66 AEWLMHH-REWIERRRCIELGSGTGALAIFLRKAM--NLDITTSDYNDQEIEDNIAYNSTTNGITPALPHIKHSWGDAFP 142 (244)
Q Consensus 66 ~~~~~~~-~~~~~~~~VLdlG~G~G~~~~~~a~~~--~~~v~~~D~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 142 (244)
.+++... ....++.+|||+|||+|..+..++... +.+|+|+|+|+.++ +.++++....+. ++..+..+.. .++
T Consensus 15 l~~l~~~~~~~~~~~~ILDiGcG~G~~~~~la~~~~~~~~v~giD~s~~~l-~~a~~~~~~~~~--~~~f~~~d~~-~~~ 90 (281)
T d2gh1a1 15 VSFLVNTVWKITKPVHIVDYGCGYGYLGLVLMPLLPEGSKYTGIDSGETLL-AEARELFRLLPY--DSEFLEGDAT-EIE 90 (281)
T ss_dssp HHHHHHTTSCCCSCCEEEEETCTTTHHHHHHTTTSCTTCEEEEEECCHHHH-HHHHHHHHSSSS--EEEEEESCTT-TCC
T ss_pred HHHHHHHHhccCCcCEEEEecCcCCHHHHHHHHhCCCCCEEEEEecchhHh-hhhhcccccccc--cccccccccc-ccc
Confidence 3455443 244577899999999999999998764 57899999999997 788877766544 2233333322 233
Q ss_pred CCCCCccEEEEcccccCCcChHHHHHHHHHHHHhcCCCCceEeeccc
Q 026036 143 IPNPDWDLILASDILLYVKQYSNLIKSLSVLLKSYKPKDSQVGHLTK 189 (244)
Q Consensus 143 ~~~~~fD~I~~~~~l~~~~~~~~l~~~l~~~~~~lk~gG~~~~~~~~ 189 (244)
+ .++||+|+++.++++. ++..++++++++.|||||.+++..+.
T Consensus 91 ~-~~~fD~v~~~~~l~~~---~d~~~~l~~~~~~LkpgG~lii~~~~ 133 (281)
T d2gh1a1 91 L-NDKYDIAICHAFLLHM---TTPETMLQKMIHSVKKGGKIICFEPH 133 (281)
T ss_dssp C-SSCEEEEEEESCGGGC---SSHHHHHHHHHHTEEEEEEEEEEECC
T ss_pred c-cCCceEEEEehhhhcC---CCHHHHHHHHHHHcCcCcEEEEEECC
Confidence 3 3579999999999443 33448999999999999999887543
|
| >d1yb2a1 c.66.1.13 (A:6-255) Hypothetical protein Ta0852 {Thermoplasma acidophilum [TaxId: 2303]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: tRNA(1-methyladenosine) methyltransferase-like domain: Hypothetical protein Ta0852 species: Thermoplasma acidophilum [TaxId: 2303]
Probab=99.63 E-value=1.2e-15 Score=120.75 Aligned_cols=133 Identities=13% Similarity=0.167 Sum_probs=91.7
Q ss_pred HHhhccCcccCCeEEEeCCCCcHHHHHHHHhC--CCeEEEEeCChHHHHHHHHHhHHhcCCCCCcceEeeecCCCCCCCC
Q 026036 68 WLMHHREWIERRRCIELGSGTGALAIFLRKAM--NLDITTSDYNDQEIEDNIAYNSTTNGITPALPHIKHSWGDAFPIPN 145 (244)
Q Consensus 68 ~~~~~~~~~~~~~VLdlG~G~G~~~~~~a~~~--~~~v~~~D~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 145 (244)
++.....+.+|.+|||+|||+|.++..+|+.. ..+|+++|.+++++ +.+++|........++.....+..+. ..+
T Consensus 76 ~Ii~~l~i~pG~rVLEiG~GsG~lt~~la~~v~~~g~V~~vD~~e~~~-~~A~~n~~~~~~~~nv~~~~~Di~~~--~~~ 152 (250)
T d1yb2a1 76 YIIMRCGLRPGMDILEVGVGSGNMSSYILYALNGKGTLTVVERDEDNL-KKAMDNLSEFYDIGNVRTSRSDIADF--ISD 152 (250)
T ss_dssp -----CCCCTTCEEEEECCTTSHHHHHHHHHHTTSSEEEEECSCHHHH-HHHHHHHHTTSCCTTEEEECSCTTTC--CCS
T ss_pred HHHHHcCCCCcCEEEEeeeeCcHHHHHHHHHhCCCcEEEEEECCHHHH-HHHHHHHHHhcCCCceEEEEeeeecc--ccc
Confidence 34555678899999999999999999998763 56899999999987 88888887765434444443333332 335
Q ss_pred CCccEEEEcccccCCcChHHHHHHHHHHHHhcCCCCceEeecccccCCCCCCCCCCCeEEEeeeeccCccchhhHHHHHh
Q 026036 146 PDWDLILASDILLYVKQYSNLIKSLSVLLKSYKPKDSQVGHLTKNEQGEGTEGLPWPAFLMSWRRRIGKEDETIFFTSCE 225 (244)
Q Consensus 146 ~~fD~I~~~~~l~~~~~~~~l~~~l~~~~~~lk~gG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 225 (244)
..||.|++. +. . ....+..+.+.|||||++++..+. . +..+...+.++
T Consensus 153 ~~fD~V~ld-~p----~---p~~~l~~~~~~LKpGG~lv~~~P~----------------------i--~Qv~~~~~~l~ 200 (250)
T d1yb2a1 153 QMYDAVIAD-IP----D---PWNHVQKIASMMKPGSVATFYLPN----------------------F--DQSEKTVLSLS 200 (250)
T ss_dssp CCEEEEEEC-CS----C---GGGSHHHHHHTEEEEEEEEEEESS----------------------H--HHHHHHHHHSG
T ss_pred ceeeeeeec-CC----c---hHHHHHHHHHhcCCCceEEEEeCC----------------------c--ChHHHHHHHHH
Confidence 689999873 22 1 226788899999999987764221 1 11356677888
Q ss_pred hcCCeEEEec
Q 026036 226 NAGLEVKHLG 235 (244)
Q Consensus 226 ~~Gf~v~~~~ 235 (244)
++||...++.
T Consensus 201 ~~gf~~i~~~ 210 (250)
T d1yb2a1 201 ASGMHHLETV 210 (250)
T ss_dssp GGTEEEEEEE
T ss_pred HCCCceeEEE
Confidence 8998655443
|
| >d1jqea_ c.66.1.19 (A:) Histamine methyltransferase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Histamine methyltransferase domain: Histamine methyltransferase species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.61 E-value=2.6e-16 Score=127.37 Aligned_cols=149 Identities=13% Similarity=0.158 Sum_probs=92.6
Q ss_pred ccCCeEEEeCCCCcHHHHHHHHhC-------CCeEEEEeCChHHHHHHHHHhHHhcCCCCCcceEeeecCC---------
Q 026036 76 IERRRCIELGSGTGALAIFLRKAM-------NLDITTSDYNDQEIEDNIAYNSTTNGITPALPHIKHSWGD--------- 139 (244)
Q Consensus 76 ~~~~~VLdlG~G~G~~~~~~a~~~-------~~~v~~~D~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~--------- 139 (244)
.++.+|||||||+|.++..++... ..+++++|+|+.|+ +.+++++..... +..+.++|..
T Consensus 39 ~~~~~VLDiGcG~G~~~~~ll~~l~~~~~~~~~~~~~vD~s~~~l-~~a~~~~~~~~~---~~~~~~~~~~~~~~~~~~~ 114 (280)
T d1jqea_ 39 KSEIKILSIGGGAGEIDLQILSKVQAQYPGVCINNEVVEPSAEQI-AKYKELVAKISN---LENVKFAWHKETSSEYQSR 114 (280)
T ss_dssp CSEEEEEEETCTTSHHHHHHHHHHHHHSTTCEEEEEEECCCHHHH-HHHHHHHTTCCS---CTTEEEEEECSCHHHHHHH
T ss_pred CCCCeEEEEcCCCCHHHHHHHHHhhhhccCCceEEEEEeCcHHHH-HHHHHHHhhccc---cccccccchhhhhhhhcch
Confidence 344589999999999887775542 34689999999997 666665543221 2333444322
Q ss_pred -CCCCCCCCccEEEEcccccCCcChHHHHHHHHHHHHhcCCCCceEeecccccCCCCCCCC-CCCeEEEeeeeccCccch
Q 026036 140 -AFPIPNPDWDLILASDILLYVKQYSNLIKSLSVLLKSYKPKDSQVGHLTKNEQGEGTEGL-PWPAFLMSWRRRIGKEDE 217 (244)
Q Consensus 140 -~~~~~~~~fD~I~~~~~l~~~~~~~~l~~~l~~~~~~lk~gG~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~ 217 (244)
..+..+++||+|++.+++++... +.+++++++++|+|||.+++.+..........+. ....+........ .+.
T Consensus 115 ~~~~~~~~~fD~I~~~~~l~~~~d---~~~~l~~l~~~LkpgG~l~i~~~~~~~~~~~l~~~~~~~~~~~~~~~~--~~~ 189 (280)
T d1jqea_ 115 MLEKKELQKWDFIHMIQMLYYVKD---IPATLKFFHSLLGTNAKMLIIVVSGSSGWDKLWKKYGSRFPQDDLCQY--ITS 189 (280)
T ss_dssp HTTSSSCCCEEEEEEESCGGGCSC---HHHHHHHHHHTEEEEEEEEEEEECTTSHHHHHHHHHGGGSCCCTTSCC--CCH
T ss_pred hcccCCCCceeEEEEccceecCCC---HHHHHHHHHhhCCCCCEEEEEEecCcchHHHHHHHHHHhcCCCccccc--CCH
Confidence 12345679999999999955433 4499999999999999988875433221100000 0000000011111 123
Q ss_pred hhHHHHHhhcCCeEEE
Q 026036 218 TIFFTSCENAGLEVKH 233 (244)
Q Consensus 218 ~~~~~~l~~~Gf~v~~ 233 (244)
..+.+.+++.||..+.
T Consensus 190 ~~~~~~L~~~G~~~~~ 205 (280)
T d1jqea_ 190 DDLTQMLDNLGLKYEC 205 (280)
T ss_dssp HHHHHHHHHHTCCEEE
T ss_pred HHHHHHHHHCCCceEE
Confidence 6788999999997554
|
| >d1g6q1_ c.66.1.6 (1:) Arginine methyltransferase, HMT1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Arginine methyltransferase domain: Arginine methyltransferase, HMT1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=99.60 E-value=1.8e-15 Score=125.04 Aligned_cols=115 Identities=15% Similarity=0.207 Sum_probs=87.5
Q ss_pred HHHhhccCcccCCeEEEeCCCCcHHHHHHHHhCCCeEEEEeCChHHHHHHHHHhHHhcCCCCCcceEeeecCCCCCCCCC
Q 026036 67 EWLMHHREWIERRRCIELGSGTGALAIFLRKAMNLDITTSDYNDQEIEDNIAYNSTTNGITPALPHIKHSWGDAFPIPNP 146 (244)
Q Consensus 67 ~~~~~~~~~~~~~~VLdlG~G~G~~~~~~a~~~~~~v~~~D~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 146 (244)
+.+.++....+|++|||||||+|.+++.+|+.++.+|+++|.++ ++ ..++++...++...++..+..+.. .++.+++
T Consensus 28 ~aI~~~~~~~~~~~VLDlGcGtG~ls~~aa~~Ga~~V~avd~s~-~~-~~a~~~~~~~~~~~~i~~i~~~~~-~l~~~~~ 104 (328)
T d1g6q1_ 28 NAIIQNKDLFKDKIVLDVGCGTGILSMFAAKHGAKHVIGVDMSS-II-EMAKELVELNGFSDKITLLRGKLE-DVHLPFP 104 (328)
T ss_dssp HHHHHHHHHHTTCEEEEETCTTSHHHHHHHHTCCSEEEEEESST-HH-HHHHHHHHHTTCTTTEEEEESCTT-TSCCSSS
T ss_pred HHHHhccccCCcCEEEEeCCCCCHHHHHHHHhCCCEEEEEeCCH-HH-HHHHHHHHHhCccccceEEEeehh-hccCccc
Confidence 33444455668999999999999999999998778999999997 44 677777788887666666655443 3456677
Q ss_pred CccEEEEcccccCCcChHHHHHHHHHHHHhcCCCCceE
Q 026036 147 DWDLILASDILLYVKQYSNLIKSLSVLLKSYKPKDSQV 184 (244)
Q Consensus 147 ~fD~I~~~~~l~~~~~~~~l~~~l~~~~~~lk~gG~~~ 184 (244)
+||+|++..+.+.......+...+.+..+.|||||+++
T Consensus 105 ~~D~i~se~~~~~~~~e~~~~~~~~a~~r~LkpgG~ii 142 (328)
T d1g6q1_ 105 KVDIIISEWMGYFLLYESMMDTVLYARDHYLVEGGLIF 142 (328)
T ss_dssp CEEEEEECCCBTTBSTTCCHHHHHHHHHHHEEEEEEEE
T ss_pred ceeEEEEEecceeeccchhHHHHHHHHHhccCCCeEEE
Confidence 99999997776444444455678888899999999764
|
| >d1oria_ c.66.1.6 (A:) Protein arginine N-methyltransferase 1, PRMT1 {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Arginine methyltransferase domain: Protein arginine N-methyltransferase 1, PRMT1 species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=99.60 E-value=1.9e-15 Score=124.26 Aligned_cols=116 Identities=20% Similarity=0.218 Sum_probs=86.9
Q ss_pred HHHhhccCcccCCeEEEeCCCCcHHHHHHHHhCCCeEEEEeCChHHHHHHHHHhHHhcCCCCCcceEeeecCCCCCCCCC
Q 026036 67 EWLMHHREWIERRRCIELGSGTGALAIFLRKAMNLDITTSDYNDQEIEDNIAYNSTTNGITPALPHIKHSWGDAFPIPNP 146 (244)
Q Consensus 67 ~~~~~~~~~~~~~~VLdlG~G~G~~~~~~a~~~~~~v~~~D~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 146 (244)
+.+..+....+|++|||||||+|.+++.+|+.++.+|+++|.++.+ ..+++++..|++..++..+..+..+ ++.+.+
T Consensus 23 ~ai~~~~~~~~~~~VLDiGcG~G~ls~~aa~~Ga~~V~avd~s~~~--~~a~~~~~~n~~~~~v~~~~~~~~~-~~~~~~ 99 (316)
T d1oria_ 23 NSMFHNRHLFKDKVVLDVGSGTGILCMFAAKAGARKVIGIECSSIS--DYAVKIVKANKLDHVVTIIKGKVEE-VELPVE 99 (316)
T ss_dssp HHHHTCHHHHTTCEEEEETCTTSHHHHHHHHTTCSEEEEEECSTTH--HHHHHHHHHTTCTTTEEEEESCTTT-CCCSSS
T ss_pred HHHHhccccCCcCEEEEEecCCcHHHHHHHHhCCCEEEEEcCcHHH--hhhhhHHHHhCCccccceEeccHHH-cccccc
Confidence 3455555567899999999999999999999877899999999854 4566777888887666665544433 455567
Q ss_pred CccEEEEcccccCCcChHHHHHHHHHHHHhcCCCCceEe
Q 026036 147 DWDLILASDILLYVKQYSNLIKSLSVLLKSYKPKDSQVG 185 (244)
Q Consensus 147 ~fD~I~~~~~l~~~~~~~~l~~~l~~~~~~lk~gG~~~~ 185 (244)
+||+|++..+.+.......+...+..+.+.|||||+++-
T Consensus 100 ~~D~ivs~~~~~~l~~e~~~~~~l~~~~r~Lkp~G~iiP 138 (316)
T d1oria_ 100 KVDIIISEWMGYCLFYESMLNTVLHARDKWLAPDGLIFP 138 (316)
T ss_dssp CEEEEEECCCBBTBTBTCCHHHHHHHHHHHEEEEEEEES
T ss_pred eeEEEeeeeeeeeeccHHHHHHHHHHHHhcCCCCeEEEe
Confidence 899999866653333333456888899999999998763
|
| >d1zx0a1 c.66.1.16 (A:8-236) Guanidinoacetate methyltransferase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Guanidinoacetate methyltransferase domain: Guanidinoacetate methyltransferase species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.59 E-value=3e-16 Score=123.39 Aligned_cols=108 Identities=17% Similarity=0.105 Sum_probs=75.6
Q ss_pred ccCCeEEEeCCCCcHHHHHHHHhCCCeEEEEeCChHHHHHHHHHhHHhcCCCCCcceEeeecCC-CCCCCCCCccEEEEc
Q 026036 76 IERRRCIELGSGTGALAIFLRKAMNLDITTSDYNDQEIEDNIAYNSTTNGITPALPHIKHSWGD-AFPIPNPDWDLILAS 154 (244)
Q Consensus 76 ~~~~~VLdlG~G~G~~~~~~a~~~~~~v~~~D~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~fD~I~~~ 154 (244)
.+|.+|||||||+|..+..+++....+|+++|+|+.++ +.++++...... .+..+..++.+ .....+++||.|+.-
T Consensus 52 ~~g~~VLdIGcG~G~~a~~~a~~~~~~v~~id~s~~~~-~~a~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~fD~i~fD 128 (229)
T d1zx0a1 52 SKGGRVLEVGFGMAIAASKVQEAPIDEHWIIECNDGVF-QRLRDWAPRQTH--KVIPLKGLWEDVAPTLPDGHFDGILYD 128 (229)
T ss_dssp TTCEEEEEECCTTSHHHHHHHTSCEEEEEEEECCHHHH-HHHHHHGGGCSS--EEEEEESCHHHHGGGSCTTCEEEEEEC
T ss_pred cCCCeEEEeeccchHHHHHHHHcCCCeEEEeCCCHHHH-HHHHHHhhhccc--ccccccccccccccccccccccceeec
Confidence 36789999999999999999887667899999999987 777777655433 12222222211 123456789998742
Q ss_pred cc--ccCCcChHHHHHHHHHHHHhcCCCCceEee
Q 026036 155 DI--LLYVKQYSNLIKSLSVLLKSYKPKDSQVGH 186 (244)
Q Consensus 155 ~~--l~~~~~~~~l~~~l~~~~~~lk~gG~~~~~ 186 (244)
.+ .+......+...++++++|+|||||+|++.
T Consensus 129 ~~~~~~~~~~~~~~~~~~~~~~r~LkpGG~~~~~ 162 (229)
T d1zx0a1 129 TYPLSEETWHTHQFNFIKNHAFRLLKPGGVLTYC 162 (229)
T ss_dssp CCCCBGGGTTTHHHHHHHHTHHHHEEEEEEEEEC
T ss_pred ccccccccccccCHHHHHHHHHHHcCCCcEEEEE
Confidence 11 112233556668999999999999988765
|
| >d1o54a_ c.66.1.13 (A:) Hypothetical protein TM0748 {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: tRNA(1-methyladenosine) methyltransferase-like domain: Hypothetical protein TM0748 species: Thermotoga maritima [TaxId: 2336]
Probab=99.59 E-value=6.5e-15 Score=117.80 Aligned_cols=133 Identities=13% Similarity=0.107 Sum_probs=96.3
Q ss_pred HHhhccCcccCCeEEEeCCCCcHHHHHHHHhC--CCeEEEEeCChHHHHHHHHHhHHhcCCCCCcceEeeecCCCC-CCC
Q 026036 68 WLMHHREWIERRRCIELGSGTGALAIFLRKAM--NLDITTSDYNDQEIEDNIAYNSTTNGITPALPHIKHSWGDAF-PIP 144 (244)
Q Consensus 68 ~~~~~~~~~~~~~VLdlG~G~G~~~~~~a~~~--~~~v~~~D~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~ 144 (244)
++.....+.+|.+|||+|||+|.++..+|+.. ..+|+++|++++++ +.+++|....++.. .+.+...+.. .+.
T Consensus 94 ~Ii~~l~i~pG~~VLDiG~GsG~lt~~lA~~~~~~G~V~~vD~~~~~~-~~A~~~~~~~g~~~---~v~~~~~d~~~~~~ 169 (266)
T d1o54a_ 94 FIAMMLDVKEGDRIIDTGVGSGAMCAVLARAVGSSGKVFAYEKREEFA-KLAESNLTKWGLIE---RVTIKVRDISEGFD 169 (266)
T ss_dssp HHHHHTTCCTTCEEEEECCTTSHHHHHHHHHTTTTCEEEEECCCHHHH-HHHHHHHHHTTCGG---GEEEECCCGGGCCS
T ss_pred HHHHhhCCCCCCEEEECCCCCCHHHHHHHHHhCCCcEEEEEeCCHHHH-HHHHHHHHHhcccc---CcEEEecccccccc
Confidence 44555678899999999999999999999875 57899999999987 88899988877633 3344444432 233
Q ss_pred CCCccEEEEcccccCCcChHHHHHHHHHHHHhcCCCCceEeecccccCCCCCCCCCCCeEEEeeeeccCccchhhHHHHH
Q 026036 145 NPDWDLILASDILLYVKQYSNLIKSLSVLLKSYKPKDSQVGHLTKNEQGEGTEGLPWPAFLMSWRRRIGKEDETIFFTSC 224 (244)
Q Consensus 145 ~~~fD~I~~~~~l~~~~~~~~l~~~l~~~~~~lk~gG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 224 (244)
...||.|+. ++ .. ....++++.++|||||++++..+.. +......+.+
T Consensus 170 ~~~~D~V~~-d~----p~---p~~~l~~~~~~LKpGG~lv~~~P~~------------------------~Qv~~~~~~l 217 (266)
T d1o54a_ 170 EKDVDALFL-DV----PD---PWNYIDKCWEALKGGGRFATVCPTT------------------------NQVQETLKKL 217 (266)
T ss_dssp CCSEEEEEE-CC----SC---GGGTHHHHHHHEEEEEEEEEEESSH------------------------HHHHHHHHHH
T ss_pred ccceeeeEe-cC----CC---HHHHHHHHHhhcCCCCEEEEEeCcc------------------------cHHHHHHHHH
Confidence 457998875 22 22 2378899999999999887642211 1235777889
Q ss_pred hhcCCeEEEecc
Q 026036 225 ENAGLEVKHLGS 236 (244)
Q Consensus 225 ~~~Gf~v~~~~~ 236 (244)
++.||...++.+
T Consensus 218 ~~~gF~~i~~~E 229 (266)
T d1o54a_ 218 QELPFIRIEVWE 229 (266)
T ss_dssp HHSSEEEEEEEC
T ss_pred HHCCceeEEEEE
Confidence 999997655543
|
| >d2fyta1 c.66.1.6 (A:238-548) Protein arginine N-methyltransferase 3, PRMT3 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Arginine methyltransferase domain: Protein arginine N-methyltransferase 3, PRMT3 species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.58 E-value=8.1e-15 Score=120.25 Aligned_cols=117 Identities=17% Similarity=0.171 Sum_probs=84.2
Q ss_pred HHHHhhccCcccCCeEEEeCCCCcHHHHHHHHhCCCeEEEEeCChHHHHHHHHHhHHhcCCCCCcceEeeecCCCCCCCC
Q 026036 66 AEWLMHHREWIERRRCIELGSGTGALAIFLRKAMNLDITTSDYNDQEIEDNIAYNSTTNGITPALPHIKHSWGDAFPIPN 145 (244)
Q Consensus 66 ~~~~~~~~~~~~~~~VLdlG~G~G~~~~~~a~~~~~~v~~~D~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 145 (244)
.+.+.++....++++|||||||+|.+++.+|+.+..+|+++|.++.+. . ++++...++...++..+..+.. .++...
T Consensus 24 ~~ai~~~~~~~~~~~VLDiGcG~G~lsl~aa~~Ga~~V~aid~s~~~~-~-a~~~~~~~~~~~~i~~~~~~~~-~l~~~~ 100 (311)
T d2fyta1 24 RDFIYQNPHIFKDKVVLDVGCGTGILSMFAAKAGAKKVLGVDQSEILY-Q-AMDIIRLNKLEDTITLIKGKIE-EVHLPV 100 (311)
T ss_dssp HHHHHHCGGGTTTCEEEEETCTTSHHHHHHHHTTCSEEEEEESSTHHH-H-HHHHHHHTTCTTTEEEEESCTT-TSCCSC
T ss_pred HHHHHhccccCCcCEEEEECCCCCHHHHHHHHcCCCEEEEEeCHHHHH-H-HHHHHHHhCCCccceEEEeeHH-HhcCcc
Confidence 344555666778999999999999999999998778999999999764 3 4555566666555555544432 345556
Q ss_pred CCccEEEEcccccCCcChHHHHHHHHHHHHhcCCCCceEe
Q 026036 146 PDWDLILASDILLYVKQYSNLIKSLSVLLKSYKPKDSQVG 185 (244)
Q Consensus 146 ~~fD~I~~~~~l~~~~~~~~l~~~l~~~~~~lk~gG~~~~ 185 (244)
.+||+|++..+.+.......+...+....+.|||||+++-
T Consensus 101 ~~~D~Ivse~~~~~~~~e~~~~~~~~a~~~~Lkp~G~iip 140 (311)
T d2fyta1 101 EKVDVIISEWMGYFLLFESMLDSVLYAKNKYLAKGGSVYP 140 (311)
T ss_dssp SCEEEEEECCCBTTBTTTCHHHHHHHHHHHHEEEEEEEES
T ss_pred ccceEEEEeeeeeecccccccHHHHHHHHhcCCCCcEEec
Confidence 7999999966553333333455667777889999998764
|
| >d1xvaa_ c.66.1.5 (A:) Glycine N-methyltransferase {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Glycine N-methyltransferase domain: Glycine N-methyltransferase species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=99.58 E-value=1.3e-15 Score=124.01 Aligned_cols=119 Identities=16% Similarity=0.190 Sum_probs=79.8
Q ss_pred HHHhhccCcccCCeEEEeCCCCcHHHHHHHHhCCCeEEEEeCChHHHHHHHHHhHHhcCCCCC---cceEeeecCC--CC
Q 026036 67 EWLMHHREWIERRRCIELGSGTGALAIFLRKAMNLDITTSDYNDQEIEDNIAYNSTTNGITPA---LPHIKHSWGD--AF 141 (244)
Q Consensus 67 ~~~~~~~~~~~~~~VLdlG~G~G~~~~~~a~~~~~~v~~~D~~~~~l~~~~~~~~~~~~~~~~---~~~~~~~~~~--~~ 141 (244)
+|+........+.+|||+|||+|.++..+++. +.+|+|+|+|++|+ +.++++......... ......++.. ..
T Consensus 46 ~~l~~~l~~~~~~~vLD~GcG~G~~~~~la~~-g~~v~gvD~S~~ml-~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 123 (292)
T d1xvaa_ 46 AWLLGLLRQHGCHRVLDVACGTGVDSIMLVEE-GFSVTSVDASDKML-KYALKERWNRRKEPAFDKWVIEEANWLTLDKD 123 (292)
T ss_dssp HHHHHHHHHTTCCEEEESSCTTSHHHHHHHHT-TCEEEEEESCHHHH-HHHHHHHHHTTTSHHHHTCEEEECCGGGHHHH
T ss_pred HHHHHHhhhcCCCEEEEecCCCcHHHHHHHHc-CCeeeeccCchHHH-HHHHHHHHhcccccccceeeeeeccccccccc
Confidence 34433333345679999999999999999987 67999999999998 777776655443211 1111122211 00
Q ss_pred CCCCCCccEEEEcc-cccCCc----ChHHHHHHHHHHHHhcCCCCceEeec
Q 026036 142 PIPNPDWDLILASD-ILLYVK----QYSNLIKSLSVLLKSYKPKDSQVGHL 187 (244)
Q Consensus 142 ~~~~~~fD~I~~~~-~l~~~~----~~~~l~~~l~~~~~~lk~gG~~~~~~ 187 (244)
....++||+|+|.. ++.+.. ...++..+++++++.|||||+|++..
T Consensus 124 ~~~~~~fd~v~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~li~~~ 174 (292)
T d1xvaa_ 124 VPAGDGFDAVICLGNSFAHLPDSKGDQSEHRLALKNIASMVRPGGLLVIDH 174 (292)
T ss_dssp SCCTTCEEEEEECSSCGGGSCCTTSSSHHHHHHHHHHHHTEEEEEEEEEEE
T ss_pred cCCCCCceEEEEecCchhhcCCcccChHHHHHHHHHHHHHcCcCcEEEEee
Confidence 11245799999864 442221 23567789999999999999998863
|
| >d1wy7a1 c.66.1.32 (A:4-204) Hypothetical protein PH1948 {Archaeon Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Ta1320-like domain: Hypothetical protein PH1948 species: Archaeon Pyrococcus horikoshii [TaxId: 53953]
Probab=99.56 E-value=6.6e-15 Score=113.17 Aligned_cols=78 Identities=18% Similarity=0.165 Sum_probs=60.5
Q ss_pred cCcccCCeEEEeCCCCcHHHHHHHHhCCCeEEEEeCChHHHHHHHHHhHHhcCCCCCcceEeeecCCCCCCCCCCccEEE
Q 026036 73 REWIERRRCIELGSGTGALAIFLRKAMNLDITTSDYNDQEIEDNIAYNSTTNGITPALPHIKHSWGDAFPIPNPDWDLIL 152 (244)
Q Consensus 73 ~~~~~~~~VLdlG~G~G~~~~~~a~~~~~~v~~~D~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fD~I~ 152 (244)
....+|++|||+|||+|.+++.++..+..+|+++|+++.++ +.+++|+..++.. ...+ ..+... ..++||+|+
T Consensus 42 ~~dl~g~~vLDlg~GtG~l~i~a~~~g~~~v~~vdi~~~~~-~~a~~N~~~~~~~--~~~~---~~d~~~-~~~~fD~Vi 114 (201)
T d1wy7a1 42 LGDIEGKVVADLGAGTGVLSYGALLLGAKEVICVEVDKEAV-DVLIENLGEFKGK--FKVF---IGDVSE-FNSRVDIVI 114 (201)
T ss_dssp TTSSTTCEEEEETCTTCHHHHHHHHTTCSEEEEEESCHHHH-HHHHHHTGGGTTS--EEEE---ESCGGG-CCCCCSEEE
T ss_pred cCCCCCCEEEECcCcchHHHHHHHHcCCCEEEEEcCcHHHH-HHHHHHHHHcCCC--ceEE---ECchhh-hCCcCcEEE
Confidence 44568899999999999999998887677999999999987 8899998877662 2222 223322 256899999
Q ss_pred Ecccc
Q 026036 153 ASDIL 157 (244)
Q Consensus 153 ~~~~l 157 (244)
++.++
T Consensus 115 ~nPP~ 119 (201)
T d1wy7a1 115 MNPPF 119 (201)
T ss_dssp ECCCC
T ss_pred EcCcc
Confidence 98886
|
| >d2frna1 c.66.1.47 (A:19-278) Hypothetical protein PH0793 {Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Met-10+ protein-like domain: Hypothetical protein PH0793 species: Pyrococcus horikoshii [TaxId: 53953]
Probab=99.56 E-value=2.4e-14 Score=114.14 Aligned_cols=132 Identities=13% Similarity=0.052 Sum_probs=94.7
Q ss_pred ccCCeEEEeCCCCcHHHHHHHHhCCCeEEEEeCChHHHHHHHHHhHHhcCCCCCcceEeeecCCCCCCCCCCccEEEEcc
Q 026036 76 IERRRCIELGSGTGALAIFLRKAMNLDITTSDYNDQEIEDNIAYNSTTNGITPALPHIKHSWGDAFPIPNPDWDLILASD 155 (244)
Q Consensus 76 ~~~~~VLdlG~G~G~~~~~~a~~~~~~v~~~D~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fD~I~~~~ 155 (244)
.+|.+|||+|||+|.+++.+|+.+.++|+++|+++.++ +.+++|+..|++.+++..+..|..+.. ..+.||.|+++.
T Consensus 106 ~~g~~VlD~~aG~G~~~l~~a~~~~~~V~avd~n~~a~-~~~~~N~~~n~l~~~v~~~~~D~~~~~--~~~~~D~Ii~~~ 182 (260)
T d2frna1 106 KPDELVVDMFAGIGHLSLPIAVYGKAKVIAIEKDPYTF-KFLVENIHLNKVEDRMSAYNMDNRDFP--GENIADRILMGY 182 (260)
T ss_dssp CTTCEEEETTCTTTTTHHHHHHHTCCEEEEECCCHHHH-HHHHHHHHHTTCTTTEEEECSCTTTCC--CCSCEEEEEECC
T ss_pred CCccEEEECcceEcHHHHHHHHhCCcEEEEecCCHHHH-HHHHHHHHHhCCCceEEEEEcchHHhc--cCCCCCEEEECC
Confidence 47899999999999999999988778999999999987 999999999999776666655443322 235799999976
Q ss_pred cccCCcChHHHHHHHHHHHHhcCCCCceEeecccccCCCCCCCCCCCeEEEeeeeccCccchhhHHHHHhhcCCeEEEec
Q 026036 156 ILLYVKQYSNLIKSLSVLLKSYKPKDSQVGHLTKNEQGEGTEGLPWPAFLMSWRRRIGKEDETIFFTSCENAGLEVKHLG 235 (244)
Q Consensus 156 ~l~~~~~~~~l~~~l~~~~~~lk~gG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gf~v~~~~ 235 (244)
+-+. . ..+..+.+.+++||.+.+. .............+.+.+.++..|++++.+.
T Consensus 183 p~~~----~---~~l~~a~~~l~~gG~lh~~------------------~~~~~~~~~~~~~e~~~~~~~~~g~~v~~~~ 237 (260)
T d2frna1 183 VVRT----H---EFIPKALSIAKDGAIIHYH------------------NTVPEKLMPREPFETFKRITKEYGYDVEKLN 237 (260)
T ss_dssp CSSG----G---GGHHHHHHHEEEEEEEEEE------------------EEEEGGGTTTTTHHHHHHHHHHTTCEEEEEE
T ss_pred CCch----H---HHHHHHHhhcCCCCEEEEE------------------eccccccchhhHHHHHHHHHHHcCCceEEEE
Confidence 6411 1 4556678889999965432 1112222222223556677888999887554
|
| >d1i9ga_ c.66.1.13 (A:) Probable methyltransferase Rv2118c {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: tRNA(1-methyladenosine) methyltransferase-like domain: Probable methyltransferase Rv2118c species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=99.55 E-value=1.4e-14 Score=115.34 Aligned_cols=106 Identities=15% Similarity=0.187 Sum_probs=78.1
Q ss_pred HhhccCcccCCeEEEeCCCCcHHHHHHHHhC--CCeEEEEeCChHHHHHHHHHhHHhc--CCCCCcceEeeecCCC--CC
Q 026036 69 LMHHREWIERRRCIELGSGTGALAIFLRKAM--NLDITTSDYNDQEIEDNIAYNSTTN--GITPALPHIKHSWGDA--FP 142 (244)
Q Consensus 69 ~~~~~~~~~~~~VLdlG~G~G~~~~~~a~~~--~~~v~~~D~~~~~l~~~~~~~~~~~--~~~~~~~~~~~~~~~~--~~ 142 (244)
+.....+.+|.+|||+|||+|.++..+|+.. ..+|+++|++++++ +.+++|.... ....+ +.+..++. .+
T Consensus 88 Ii~~l~i~PG~~VLE~G~GsG~lt~~La~~vgp~G~V~~~d~~~~~~-~~Ar~n~~~~~~~~~~n---v~~~~~d~~~~~ 163 (264)
T d1i9ga_ 88 IVHEGDIFPGARVLEAGAGSGALTLSLLRAVGPAGQVISYEQRADHA-EHARRNVSGCYGQPPDN---WRLVVSDLADSE 163 (264)
T ss_dssp HHHHTTCCTTCEEEEECCTTSHHHHHHHHHHCTTSEEEEECSCHHHH-HHHHHHHHHHHTSCCTT---EEEECSCGGGCC
T ss_pred HHHHhCCCCCCEEEecCcCCcHHHHHHHHhhCCCcEEEEecCCHHHH-HHHHHhhhhhccCCCce---EEEEeccccccc
Confidence 3444567799999999999999999999875 56899999999987 8888887643 22223 33333332 34
Q ss_pred CCCCCccEEEEcccccCCcChHHHHHHHHHHHHhcCCCCceEee
Q 026036 143 IPNPDWDLILASDILLYVKQYSNLIKSLSVLLKSYKPKDSQVGH 186 (244)
Q Consensus 143 ~~~~~fD~I~~~~~l~~~~~~~~l~~~l~~~~~~lk~gG~~~~~ 186 (244)
+.+++||.|++ |+ ++....+.++.++|||||++++.
T Consensus 164 ~~~~~fDaV~l-dl-------p~P~~~l~~~~~~LkpGG~lv~~ 199 (264)
T d1i9ga_ 164 LPDGSVDRAVL-DM-------LAPWEVLDAVSRLLVAGGVLMVY 199 (264)
T ss_dssp CCTTCEEEEEE-ES-------SCGGGGHHHHHHHEEEEEEEEEE
T ss_pred ccCCCcceEEE-ec-------CCHHHHHHHHHhccCCCCEEEEE
Confidence 56789999986 32 22237888999999999987764
|
| >d1nt2a_ c.66.1.3 (A:) Fibrillarin homologue {Archaeon Archaeoglobus fulgidus [TaxId: 2234]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Fibrillarin homologue domain: Fibrillarin homologue species: Archaeon Archaeoglobus fulgidus [TaxId: 2234]
Probab=99.54 E-value=3.7e-14 Score=109.55 Aligned_cols=122 Identities=13% Similarity=0.077 Sum_probs=79.4
Q ss_pred ceeechHH-HHHHHHhh--ccCcccCCeEEEeCCCCcHHHHHHHHhC-CCeEEEEeCChHHHHHHHHHhHHhcCCCCCcc
Q 026036 56 NFLWPGTF-SFAEWLMH--HREWIERRRCIELGSGTGALAIFLRKAM-NLDITTSDYNDQEIEDNIAYNSTTNGITPALP 131 (244)
Q Consensus 56 ~~~w~~~~-~l~~~~~~--~~~~~~~~~VLdlG~G~G~~~~~~a~~~-~~~v~~~D~~~~~l~~~~~~~~~~~~~~~~~~ 131 (244)
...|.... .++..+.. ...+.+|.+|||||||+|..+.+++... ..+|+|+|+++.|+ +.+++++...+ ++.
T Consensus 32 ~r~w~p~rsklaa~i~~g~~l~lkpg~~VLDlGcG~G~~~~~la~~v~~g~V~gvDis~~~i-~~a~~~a~~~~---ni~ 107 (209)
T d1nt2a_ 32 YREWVPWRSKLAAMILKGHRLKLRGDERVLYLGAASGTTVSHLADIVDEGIIYAVEYSAKPF-EKLLELVRERN---NII 107 (209)
T ss_dssp EEECCGGGCHHHHHHHTSCCCCCCSSCEEEEETCTTSHHHHHHHHHTTTSEEEEECCCHHHH-HHHHHHHHHCS---SEE
T ss_pred eeeeCCcchHHHHHHhccccCCCCCCCEEEEeCCcCCHHHHHHHHhccCCeEEEEeCCHHHH-HHHHHHhhccC---Cce
Confidence 34555322 44545443 3567799999999999999999998875 46899999999998 66666555432 223
Q ss_pred eEeeecCCCC--CCCCCCccEEEEcccccCCcChHHHHHHHHHHHHhcCCCCceEee
Q 026036 132 HIKHSWGDAF--PIPNPDWDLILASDILLYVKQYSNLIKSLSVLLKSYKPKDSQVGH 186 (244)
Q Consensus 132 ~~~~~~~~~~--~~~~~~fD~I~~~~~l~~~~~~~~l~~~l~~~~~~lk~gG~~~~~ 186 (244)
.+..+..+.. ......+|+|++ + +.++ .+....++++.+.|||||++++.
T Consensus 108 ~i~~d~~~~~~~~~~~~~vd~v~~-~-~~~~---~~~~~~l~~~~~~LkpgG~l~i~ 159 (209)
T d1nt2a_ 108 PLLFDASKPWKYSGIVEKVDLIYQ-D-IAQK---NQIEILKANAEFFLKEKGEVVIM 159 (209)
T ss_dssp EECSCTTCGGGTTTTCCCEEEEEE-C-CCST---THHHHHHHHHHHHEEEEEEEEEE
T ss_pred EEEeeccCccccccccceEEEEEe-c-ccCh---hhHHHHHHHHHHHhccCCeEEEE
Confidence 3333332221 111224555544 2 3132 34458899999999999999886
|
| >d2esra1 c.66.1.46 (A:28-179) Putative methyltransferase SPy1538 {Streptococcus pyogenes [TaxId: 1314]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: YhhF-like domain: Putative methyltransferase SPy1538 species: Streptococcus pyogenes [TaxId: 1314]
Probab=99.53 E-value=1.5e-15 Score=111.75 Aligned_cols=106 Identities=15% Similarity=0.098 Sum_probs=80.0
Q ss_pred ccCCeEEEeCCCCcHHHHHHHHhCCCeEEEEeCChHHHHHHHHHhHHhcCCCCCcceEeeecCCCCCCCCCCccEEEEcc
Q 026036 76 IERRRCIELGSGTGALAIFLRKAMNLDITTSDYNDQEIEDNIAYNSTTNGITPALPHIKHSWGDAFPIPNPDWDLILASD 155 (244)
Q Consensus 76 ~~~~~VLdlG~G~G~~~~~~a~~~~~~v~~~D~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fD~I~~~~ 155 (244)
.+|++|||+|||||.+++.++.++..+|+++|.++.++ +.+++|+..++...++..++.+..+.+....++||+|++.+
T Consensus 13 ~~g~~vlDl~~GtG~~~iea~~rga~~v~~ve~~~~a~-~~~~~n~~~~~~~~~~~ii~~D~~~~l~~~~~~fDiIf~DP 91 (152)
T d2esra1 13 FNGGRVLDLFAGSGGLAIEAVSRGMSAAVLVEKNRKAQ-AIIQDNIIMTKAENRFTLLKMEAERAIDCLTGRFDLVFLDP 91 (152)
T ss_dssp CCSCEEEEETCTTCHHHHHHHHTTCCEEEEECCCHHHH-HHHHHHHHTTTCGGGEEEECSCHHHHHHHBCSCEEEEEECC
T ss_pred CCCCeEEEcCCccCHHHHHHHHhCcceeeeehhchhhh-hhhhhhhhhcccccchhhhcccccccccccccccceeEech
Confidence 57899999999999999998888778999999999987 89999999888866666665554333334467899999955
Q ss_pred cccCCcChHHHHHHHHHHH--HhcCCCCceEee
Q 026036 156 ILLYVKQYSNLIKSLSVLL--KSYKPKDSQVGH 186 (244)
Q Consensus 156 ~l~~~~~~~~l~~~l~~~~--~~lk~gG~~~~~ 186 (244)
+ |..... ...+..+. +.|+|+|.+++.
T Consensus 92 P-y~~~~~---~~~l~~i~~~~~L~~~g~iiiE 120 (152)
T d2esra1 92 P-YAKETI---VATIEALAAKNLLSEQVMVVCE 120 (152)
T ss_dssp S-SHHHHH---HHHHHHHHHTTCEEEEEEEEEE
T ss_pred h-hccchH---HHHHHHHHHCCCcCCCeEEEEE
Confidence 5 343333 35555554 568999977664
|
| >d1p91a_ c.66.1.33 (A:) rRNA methyltransferase RlmA {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: rRNA methyltransferase RlmA domain: rRNA methyltransferase RlmA species: Escherichia coli [TaxId: 562]
Probab=99.52 E-value=1.8e-14 Score=115.70 Aligned_cols=97 Identities=14% Similarity=0.144 Sum_probs=73.5
Q ss_pred ccCCeEEEeCCCCcHHHHHHHHhC-CCeEEEEeCChHHHHHHHHHhHHhcCCCCCcceEeeecCCCCCCCCCCccEEEEc
Q 026036 76 IERRRCIELGSGTGALAIFLRKAM-NLDITTSDYNDQEIEDNIAYNSTTNGITPALPHIKHSWGDAFPIPNPDWDLILAS 154 (244)
Q Consensus 76 ~~~~~VLdlG~G~G~~~~~~a~~~-~~~v~~~D~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fD~I~~~ 154 (244)
.++.+|||+|||+|.++..+++.. +.+++|+|+|+.|+ +.++++.. ++..+..+. ..+++.+++||+|++.
T Consensus 83 ~~~~~iLDiGcG~G~~~~~l~~~~~~~~~~giD~s~~~~-~~a~~~~~------~~~~~~~d~-~~l~~~~~sfD~v~~~ 154 (268)
T d1p91a_ 83 DKATAVLDIGCGEGYYTHAFADALPEITTFGLDVSKVAI-KAAAKRYP------QVTFCVASS-HRLPFSDTSMDAIIRI 154 (268)
T ss_dssp TTCCEEEEETCTTSTTHHHHHHTCTTSEEEEEESCHHHH-HHHHHHCT------TSEEEECCT-TSCSBCTTCEEEEEEE
T ss_pred CCCCEEEEeCCCCcHHHHHHHHHCCCCEEEEecchHhhh-hhhhcccc------cccceeeeh-hhccCCCCCEEEEeec
Confidence 467799999999999999998876 67899999999998 55554321 122333232 3467778899999998
Q ss_pred ccccCCcChHHHHHHHHHHHHhcCCCCceEeecccc
Q 026036 155 DILLYVKQYSNLIKSLSVLLKSYKPKDSQVGHLTKN 190 (244)
Q Consensus 155 ~~l~~~~~~~~l~~~l~~~~~~lk~gG~~~~~~~~~ 190 (244)
.++ ++ ++++.|+|||||++++.++..
T Consensus 155 ~~~-~~---------~~e~~rvLkpgG~l~~~~p~~ 180 (268)
T d1p91a_ 155 YAP-CK---------AEELARVVKPGGWVITATPGP 180 (268)
T ss_dssp SCC-CC---------HHHHHHHEEEEEEEEEEEECT
T ss_pred CCH-HH---------HHHHHHHhCCCcEEEEEeeCC
Confidence 776 22 457899999999999986654
|
| >d1dl5a1 c.66.1.7 (A:1-213) Protein-L-isoaspartyl O-methyltransferase {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Protein-L-isoaspartyl O-methyltransferase domain: Protein-L-isoaspartyl O-methyltransferase species: Thermotoga maritima [TaxId: 2336]
Probab=99.52 E-value=2.3e-14 Score=111.15 Aligned_cols=111 Identities=16% Similarity=0.197 Sum_probs=81.1
Q ss_pred HHHHHHHhhccCcccCCeEEEeCCCCcHHHHHHHHhC--CCeEEEEeCChHHHHHHHHHhHHhcCCCCCcceEeeecCCC
Q 026036 63 FSFAEWLMHHREWIERRRCIELGSGTGALAIFLRKAM--NLDITTSDYNDQEIEDNIAYNSTTNGITPALPHIKHSWGDA 140 (244)
Q Consensus 63 ~~l~~~~~~~~~~~~~~~VLdlG~G~G~~~~~~a~~~--~~~v~~~D~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 140 (244)
..+...+++...+.+|.+|||||||+|..+..+++.. ..+|+++|++++++ +.++++....++. .+....++.
T Consensus 61 P~~~a~~l~~l~l~~g~~VLdiG~GtG~~s~~la~~~~~~g~V~~id~~~~~~-~~a~~~~~~~~~~----n~~~~~~d~ 135 (213)
T d1dl5a1 61 PSLMALFMEWVGLDKGMRVLEIGGGTGYNAAVMSRVVGEKGLVVSVEYSRKIC-EIAKRNVERLGIE----NVIFVCGDG 135 (213)
T ss_dssp HHHHHHHHHHTTCCTTCEEEEECCTTSHHHHHHHHHHCTTCEEEEEESCHHHH-HHHHHHHHHTTCC----SEEEEESCG
T ss_pred chhhHHHHHhhhccccceEEEecCccchhHHHHHHHhCCCCcEEEeecchhhH-HHhhhhHhhhccc----ccccccCch
Confidence 3444445566678899999999999999999998765 46899999999987 8888888877663 222333332
Q ss_pred C--CCCCCCccEEEEcccccCCcChHHHHHHHHHHHHhcCCCCceEeec
Q 026036 141 F--PIPNPDWDLILASDILLYVKQYSNLIKSLSVLLKSYKPKDSQVGHL 187 (244)
Q Consensus 141 ~--~~~~~~fD~I~~~~~l~~~~~~~~l~~~l~~~~~~lk~gG~~~~~~ 187 (244)
. ....++||+|++..++.+ .+ +.+.+.|||||++++.+
T Consensus 136 ~~~~~~~~~fD~I~~~~~~~~---~p------~~l~~~LkpGG~lv~pv 175 (213)
T d1dl5a1 136 YYGVPEFSPYDVIFVTVGVDE---VP------ETWFTQLKEGGRVIVPI 175 (213)
T ss_dssp GGCCGGGCCEEEEEECSBBSC---CC------HHHHHHEEEEEEEEEEB
T ss_pred HHccccccchhhhhhhccHHH---hH------HHHHHhcCCCcEEEEEE
Confidence 2 233468999999988832 22 23678899999988754
|
| >d2h00a1 c.66.1.54 (A:5-254) Methyltransferase 10 domain containing protein METT10D {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Methyltransferase 10 domain domain: Methyltransferase 10 domain containing protein METT10D species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.49 E-value=4.5e-13 Score=106.09 Aligned_cols=82 Identities=13% Similarity=0.221 Sum_probs=66.7
Q ss_pred cCCeEEEeCCCCcHHHHHHHHhC-CCeEEEEeCChHHHHHHHHHhHHhcCCCCCcceEeeecCCCC-----CCCCCCccE
Q 026036 77 ERRRCIELGSGTGALAIFLRKAM-NLDITTSDYNDQEIEDNIAYNSTTNGITPALPHIKHSWGDAF-----PIPNPDWDL 150 (244)
Q Consensus 77 ~~~~VLdlG~G~G~~~~~~a~~~-~~~v~~~D~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~fD~ 150 (244)
+..+|||+|||+|.+++.++... ..+++|+|++++++ +.+++|+..|++..++..+..++.+.+ ....++||+
T Consensus 61 ~~~~~LDiGtGsg~I~~~l~~~~~~~~~~~~Di~~~al-~~A~~N~~~n~l~~~~~~~~~~~~~~~~~~~~~~~~~~fD~ 139 (250)
T d2h00a1 61 TLRRGIDIGTGASCIYPLLGATLNGWYFLATEVDDMCF-NYAKKNVEQNNLSDLIKVVKVPQKTLLMDALKEESEIIYDF 139 (250)
T ss_dssp CCCEEEEESCTTTTHHHHHHHHHHCCEEEEEESCHHHH-HHHHHHHHHTTCTTTEEEEECCTTCSSTTTSTTCCSCCBSE
T ss_pred ccceEEEeCCCchHHHHHHHHhCCCccccceecCHHHH-HHHHHHHHHhCCCcceeeeeeccHHhhhhhhhhcccCceeE
Confidence 44699999999999999988776 78999999999998 999999999999887776666554332 123458999
Q ss_pred EEEcccccC
Q 026036 151 ILASDILLY 159 (244)
Q Consensus 151 I~~~~~l~~ 159 (244)
|+||+++|.
T Consensus 140 ivsNPPY~~ 148 (250)
T d2h00a1 140 CMCNPPFFA 148 (250)
T ss_dssp EEECCCCC-
T ss_pred EEecCcccc
Confidence 999999863
|
| >d1g8aa_ c.66.1.3 (A:) Fibrillarin homologue {Archaeon Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Fibrillarin homologue domain: Fibrillarin homologue species: Archaeon Pyrococcus horikoshii [TaxId: 53953]
Probab=99.48 E-value=1.7e-13 Score=106.90 Aligned_cols=107 Identities=10% Similarity=0.019 Sum_probs=76.2
Q ss_pred ccCcccCCeEEEeCCCCcHHHHHHHHhC--CCeEEEEeCChHHHHHHHHHhHHhcCCCCCcceEeeecCCCC--CCCCCC
Q 026036 72 HREWIERRRCIELGSGTGALAIFLRKAM--NLDITTSDYNDQEIEDNIAYNSTTNGITPALPHIKHSWGDAF--PIPNPD 147 (244)
Q Consensus 72 ~~~~~~~~~VLdlG~G~G~~~~~~a~~~--~~~v~~~D~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~ 147 (244)
...+.+|.+|||+|||+|..+.+++... ..+|+++|+++.++ +.++.++...+. +..+..+..... ......
T Consensus 68 ~l~i~pG~~VLDlGaGsG~~t~~la~~VG~~G~V~aVD~s~~~l-~~a~~~a~~~~~---~~~i~~d~~~~~~~~~~~~~ 143 (227)
T d1g8aa_ 68 NFPIKPGKSVLYLGIASGTTASHVSDIVGWEGKIFGIEFSPRVL-RELVPIVEERRN---IVPILGDATKPEEYRALVPK 143 (227)
T ss_dssp CCCCCTTCEEEEETTTSTTHHHHHHHHHCTTSEEEEEESCHHHH-HHHHHHHSSCTT---EEEEECCTTCGGGGTTTCCC
T ss_pred ccccCCCCEEEEeccCCCHHHHHHHHHhCCCCEEEEEeCcHHHH-HHHHHHHHhcCC---ceEEEEECCCcccccccccc
Confidence 4567899999999999999999999875 56899999999998 666666543322 223333333221 223457
Q ss_pred ccEEEEcccccCCcChHHHHHHHHHHHHhcCCCCceEeec
Q 026036 148 WDLILASDILLYVKQYSNLIKSLSVLLKSYKPKDSQVGHL 187 (244)
Q Consensus 148 fD~I~~~~~l~~~~~~~~l~~~l~~~~~~lk~gG~~~~~~ 187 (244)
+|+|++ ++. + .++...+++++.+.|||||++++++
T Consensus 144 vD~i~~-d~~-~---~~~~~~~l~~~~~~LkpgG~lvi~~ 178 (227)
T d1g8aa_ 144 VDVIFE-DVA-Q---PTQAKILIDNAEVYLKRGGYGMIAV 178 (227)
T ss_dssp EEEEEE-CCC-S---TTHHHHHHHHHHHHEEEEEEEEEEE
T ss_pred eEEEEE-Ecc-c---cchHHHHHHHHHHhcccCCeEEEEE
Confidence 888876 332 2 2345578999999999999988763
|
| >d1ne2a_ c.66.1.32 (A:) Hypothetical protein Ta1320 {Archaeon Thermoplasma acidophilum [TaxId: 2303]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Ta1320-like domain: Hypothetical protein Ta1320 species: Archaeon Thermoplasma acidophilum [TaxId: 2303]
Probab=99.45 E-value=3.5e-14 Score=108.17 Aligned_cols=108 Identities=15% Similarity=0.138 Sum_probs=67.5
Q ss_pred cceeeeecccCCceEEEEecccCCCCcceeechHHHHHHHH--hhccCcccCCeEEEeCCCCcHHHHHHHHhCCCeEEEE
Q 026036 29 NGYVERPHQFPEMELVIREFAFHQLNANFLWPGTFSFAEWL--MHHREWIERRRCIELGSGTGALAIFLRKAMNLDITTS 106 (244)
Q Consensus 29 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~l~~~~--~~~~~~~~~~~VLdlG~G~G~~~~~~a~~~~~~v~~~ 106 (244)
...+++...++...+.+.|+... +...++++ .......+|++|||+|||+|.+++.++..+..+|+++
T Consensus 8 ~~~l~~~~~~~~~~~~leQy~T~----------~~~a~~~~~~~~~~~dl~Gk~VLDlGcGtG~l~i~a~~~ga~~V~~v 77 (197)
T d1ne2a_ 8 EIRLQKLQQQGNFKNYLEQYPTD----------ASTAAYFLIEIYNDGNIGGRSVIDAGTGNGILACGSYLLGAESVTAF 77 (197)
T ss_dssp HHHHHTSCCCC--------CCCC----------HHHHHHHHHHHHHHTSSBTSEEEEETCTTCHHHHHHHHTTBSEEEEE
T ss_pred HHHHhcCCCCCCCCcccccCCCC----------HHHHHHHHHHHHHcCCCCCCEEEEeCCCCcHHHHHHHHcCCCccccc
Confidence 34455566677788888887542 22222222 1223445899999999999999999888777889999
Q ss_pred eCChHHHHHHHHHhHHhcCCCCCcceEeeecCCCCCCCCCCccEEEEcccc
Q 026036 107 DYNDQEIEDNIAYNSTTNGITPALPHIKHSWGDAFPIPNPDWDLILASDIL 157 (244)
Q Consensus 107 D~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fD~I~~~~~l 157 (244)
|+++.++ +.+++|... +..+..+.. ..+++||+|+++.++
T Consensus 78 Did~~a~-~~ar~N~~~------~~~~~~D~~----~l~~~fD~Vi~NPPf 117 (197)
T d1ne2a_ 78 DIDPDAI-ETAKRNCGG------VNFMVADVS----EISGKYDTWIMNPPF 117 (197)
T ss_dssp ESCHHHH-HHHHHHCTT------SEEEECCGG----GCCCCEEEEEECCCC
T ss_pred ccCHHHH-HHHHHcccc------ccEEEEehh----hcCCcceEEEeCccc
Confidence 9999987 788887542 223333322 234689999998885
|
| >d2b25a1 c.66.1.13 (A:6-329) Hypothetical protein FLJ20628 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: tRNA(1-methyladenosine) methyltransferase-like domain: Hypothetical protein FLJ20628 species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.44 E-value=1.3e-13 Score=112.94 Aligned_cols=108 Identities=19% Similarity=0.194 Sum_probs=72.6
Q ss_pred hhccCcccCCeEEEeCCCCcHHHHHHHHhC--CCeEEEEeCChHHHHHHHHHhHHhc----------CCCCCcceEeeec
Q 026036 70 MHHREWIERRRCIELGSGTGALAIFLRKAM--NLDITTSDYNDQEIEDNIAYNSTTN----------GITPALPHIKHSW 137 (244)
Q Consensus 70 ~~~~~~~~~~~VLdlG~G~G~~~~~~a~~~--~~~v~~~D~~~~~l~~~~~~~~~~~----------~~~~~~~~~~~~~ 137 (244)
.....+.+|.+|||+|||+|.++..+|+.. ..+|+++|++++++ +.+++|+... ....++.....+.
T Consensus 91 l~~l~i~pG~rVLE~GtGsG~lt~~LAr~vg~~G~V~t~E~~~~~~-~~A~~n~~~~~~~~~~~~~~~~~~nv~~~~~di 169 (324)
T d2b25a1 91 LSMMDINPGDTVLEAGSGSGGMSLFLSKAVGSQGRVISFEVRKDHH-DLAKKNYKHWRDSWKLSHVEEWPDNVDFIHKDI 169 (324)
T ss_dssp HHHHTCCTTCEEEEECCTTSHHHHHHHHHHCTTCEEEEEESSHHHH-HHHHHHHHHHHHHHTTTCSSCCCCCEEEEESCT
T ss_pred HHHhCCCCCCEEEEecccccHHHHHHHHHhCCCcEEEEecCCHHHH-HHHHHHHHHhhhhhhhhhhhccccceeEEecch
Confidence 333467799999999999999999999875 56899999999987 7888777642 1122233333333
Q ss_pred CCCC-CCCCCCccEEEEcccccCCcChHHHHHHHHHHHHhcCCCCceEee
Q 026036 138 GDAF-PIPNPDWDLILASDILLYVKQYSNLIKSLSVLLKSYKPKDSQVGH 186 (244)
Q Consensus 138 ~~~~-~~~~~~fD~I~~~~~l~~~~~~~~l~~~l~~~~~~lk~gG~~~~~ 186 (244)
.+.. ......||.|+. |+. . ....+.++.++|||||++++.
T Consensus 170 ~~~~~~~~~~~fD~V~L-D~p-~------P~~~l~~~~~~LKpGG~lv~~ 211 (324)
T d2b25a1 170 SGATEDIKSLTFDAVAL-DML-N------PHVTLPVFYPHLKHGGVCAVY 211 (324)
T ss_dssp TCCC-------EEEEEE-CSS-S------TTTTHHHHGGGEEEEEEEEEE
T ss_pred hhcccccCCCCcceEee-cCc-C------HHHHHHHHHHhccCCCEEEEE
Confidence 2221 223457999986 443 1 125778899999999987764
|
| >d2as0a2 c.66.1.51 (A:73-396) Hypothetical protein PH1915, middle and C-terminal domains {Archaeon Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: hypothetical RNA methyltransferase domain: Hypothetical protein PH1915, middle and C-terminal domains species: Archaeon Pyrococcus horikoshii [TaxId: 53953]
Probab=99.44 E-value=1.8e-13 Score=112.58 Aligned_cols=123 Identities=15% Similarity=0.067 Sum_probs=86.4
Q ss_pred hHHHHHHHHhhccCcccCCeEEEeCCCCcHHHHHHHHhCCCeEEEEeCChHHHHHHHHHhHHhcCCCCCcceEeeecCCC
Q 026036 61 GTFSFAEWLMHHREWIERRRCIELGSGTGALAIFLRKAMNLDITTSDYNDQEIEDNIAYNSTTNGITPALPHIKHSWGDA 140 (244)
Q Consensus 61 ~~~~l~~~~~~~~~~~~~~~VLdlG~G~G~~~~~~a~~~~~~v~~~D~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 140 (244)
.......++.... .+|.+|||+|||+|.+++.++..+..+|+++|+++.++ +.+++|+..|++..++..+..+..+.
T Consensus 131 Dqr~~r~~~~~~~--~~g~~VLDl~~g~G~~si~~a~~ga~~V~~vD~s~~al-~~a~~N~~~ngl~~~~~~~~~d~~~~ 207 (324)
T d2as0a2 131 DQRENRLALEKWV--QPGDRVLDVFTYTGGFAIHAAIAGADEVIGIDKSPRAI-ETAKENAKLNGVEDRMKFIVGSAFEE 207 (324)
T ss_dssp TTHHHHHHHGGGC--CTTCEEEETTCTTTHHHHHHHHTTCSEEEEEESCHHHH-HHHHHHHHHTTCGGGEEEEESCHHHH
T ss_pred chhhHHHHHHhhc--CCCCeeecccCcccchhhhhhhcCCcEEEeecCCHHHH-HHHHHHHHHcCCCccceeeechhhhh
Confidence 3344444554433 36899999999999999999888777999999999987 99999999999865444433222111
Q ss_pred ---CCCCCCCccEEEEcccccCCcC------hHHHHHHHHHHHHhcCCCCceEee
Q 026036 141 ---FPIPNPDWDLILASDILLYVKQ------YSNLIKSLSVLLKSYKPKDSQVGH 186 (244)
Q Consensus 141 ---~~~~~~~fD~I~~~~~l~~~~~------~~~l~~~l~~~~~~lk~gG~~~~~ 186 (244)
+.....+||+|++..+.+.... .....+.+..+.++|+|||.+++.
T Consensus 208 ~~~~~~~~~~fD~Vi~DpP~~~~~~~~~~~~~~~y~~l~~~a~~ll~pGG~lv~~ 262 (324)
T d2as0a2 208 MEKLQKKGEKFDIVVLDPPAFVQHEKDLKAGLRAYFNVNFAGLNLVKDGGILVTC 262 (324)
T ss_dssp HHHHHHTTCCEEEEEECCCCSCSSGGGHHHHHHHHHHHHHHHHTTEEEEEEEEEE
T ss_pred hHHHHhccCCCCchhcCCccccCCHHHHHHHHHHHHHHHHHHHHHcCCCcEEEEE
Confidence 1223468999999776532211 112345777888999999987765
|
| >d1ws6a1 c.66.1.46 (A:15-185) Methyltransferase TTHA0928 {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: YhhF-like domain: Methyltransferase TTHA0928 species: Thermus thermophilus [TaxId: 274]
Probab=99.43 E-value=6.9e-14 Score=104.68 Aligned_cols=116 Identities=9% Similarity=0.072 Sum_probs=76.7
Q ss_pred HHHHHHhhccCcccCCeEEEeCCCCcHHHHHHHHhCCCeEEEEeCChHHHHHHHHHhHHhcCCCCCcceEeeecC-CCCC
Q 026036 64 SFAEWLMHHREWIERRRCIELGSGTGALAIFLRKAMNLDITTSDYNDQEIEDNIAYNSTTNGITPALPHIKHSWG-DAFP 142 (244)
Q Consensus 64 ~l~~~~~~~~~~~~~~~VLdlG~G~G~~~~~~a~~~~~~v~~~D~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~ 142 (244)
.|..++... ..+|.+|||+|||+|.+++.++.. +++|+++|.++.++ +.+++|+..+++..++.....+.. ....
T Consensus 30 ~lf~~l~~~--~~~g~~vLDl~~G~G~~~i~a~~~-ga~vv~vD~~~~a~-~~~~~N~~~~~~~~~v~~~~~d~~~~~~~ 105 (171)
T d1ws6a1 30 ALFDYLRLR--YPRRGRFLDPFAGSGAVGLEAASE-GWEAVLVEKDPEAV-RLLKENVRRTGLGARVVALPVEVFLPEAK 105 (171)
T ss_dssp HHHHHHHHH--CTTCCEEEEETCSSCHHHHHHHHT-TCEEEEECCCHHHH-HHHHHHHHHHTCCCEEECSCHHHHHHHHH
T ss_pred HHHHHhhcc--ccCCCeEEEeccccchhhhhhhhc-cchhhhcccCHHHH-hhhhHHHHhhccccceeeeehhccccccc
Confidence 444555433 347889999999999999988776 67899999999987 899999998888543322211110 0012
Q ss_pred CCCCCccEEEEcccccCCcChHHHHHHHHHHHHhcCCCCceEee
Q 026036 143 IPNPDWDLILASDILLYVKQYSNLIKSLSVLLKSYKPKDSQVGH 186 (244)
Q Consensus 143 ~~~~~fD~I~~~~~l~~~~~~~~l~~~l~~~~~~lk~gG~~~~~ 186 (244)
....+||+|++.++ |.......+...+. ...|+|||.+++.
T Consensus 106 ~~~~~fD~If~DPP-Y~~~~~~~l~~l~~--~~ll~~~g~ivie 146 (171)
T d1ws6a1 106 AQGERFTVAFMAPP-YAMDLAALFGELLA--SGLVEAGGLYVLQ 146 (171)
T ss_dssp HTTCCEEEEEECCC-TTSCTTHHHHHHHH--HTCEEEEEEEEEE
T ss_pred ccCCccceeEEccc-cccCHHHHHHHHHH--cCCcCCCeEEEEE
Confidence 23467999999666 45433232223322 3578999976654
|
| >d2fcaa1 c.66.1.53 (A:10-213) tRNA (guanine-N(7)-)-methyltransferase TrmB {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: TrmB-like domain: tRNA (guanine-N(7)-)-methyltransferase TrmB species: Bacillus subtilis [TaxId: 1423]
Probab=99.42 E-value=1.3e-12 Score=100.16 Aligned_cols=107 Identities=9% Similarity=-0.014 Sum_probs=76.5
Q ss_pred CCeEEEeCCCCcHHHHHHHHhC-CCeEEEEeCChHHHHHHHHHhHHhcCCCCCcceEeeecCCCC-CCCCCCccEEEEcc
Q 026036 78 RRRCIELGSGTGALAIFLRKAM-NLDITTSDYNDQEIEDNIAYNSTTNGITPALPHIKHSWGDAF-PIPNPDWDLILASD 155 (244)
Q Consensus 78 ~~~VLdlG~G~G~~~~~~a~~~-~~~v~~~D~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~fD~I~~~~ 155 (244)
+..|||||||+|..++.+|+.. ...++|+|+++.++ ..+.+++...+++ ++..+..+..+.. .++++++|.|++..
T Consensus 30 ~PlvLeIGcG~G~~~~~lA~~~p~~~~iGiD~~~~~i-~~a~~~~~~~~l~-Nv~~~~~Da~~l~~~~~~~~~d~v~i~f 107 (204)
T d2fcaa1 30 NPIHIEVGTGKGQFISGMAKQNPDINYIGIELFKSVI-VTAVQKVKDSEAQ-NVKLLNIDADTLTDVFEPGEVKRVYLNF 107 (204)
T ss_dssp CCEEEEECCTTSHHHHHHHHHCTTSEEEEECSCHHHH-HHHHHHHHHSCCS-SEEEECCCGGGHHHHCCTTSCCEEEEES
T ss_pred CceEEEEEecCcHHHHHHHHhCCCCcEEEeecchHHH-HHHHHHHHHHhcc-CchhcccchhhhhcccCchhhhcccccc
Confidence 4479999999999999999887 67899999999987 6777777777773 2333322221111 14567899998877
Q ss_pred cccCCcChHH-----HHHHHHHHHHhcCCCCceEee
Q 026036 156 ILLYVKQYSN-----LIKSLSVLLKSYKPKDSQVGH 186 (244)
Q Consensus 156 ~l~~~~~~~~-----l~~~l~~~~~~lk~gG~~~~~ 186 (244)
+..++..... -...++.++++|||||.+.+.
T Consensus 108 p~P~~k~~h~k~Rl~~~~~l~~~~r~LkpgG~l~i~ 143 (204)
T d2fcaa1 108 SDPWPKKRHEKRRLTYSHFLKKYEEVMGKGGSIHFK 143 (204)
T ss_dssp CCCCCSGGGGGGSTTSHHHHHHHHHHHTTSCEEEEE
T ss_pred ccccchhhhcchhhhHHHHHHHHHHhCCCCcEEEEE
Confidence 6633322110 127889999999999998876
|
| >d1i1na_ c.66.1.7 (A:) Protein-L-isoaspartyl O-methyltransferase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Protein-L-isoaspartyl O-methyltransferase domain: Protein-L-isoaspartyl O-methyltransferase species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.41 E-value=2e-13 Score=106.51 Aligned_cols=104 Identities=17% Similarity=0.230 Sum_probs=73.8
Q ss_pred CcccCCeEEEeCCCCcHHHHHHHHhC--CCeEEEEeCChHHHHHHHHHhHHhcCCCC-CcceEeeecCCCC--CCCCCCc
Q 026036 74 EWIERRRCIELGSGTGALAIFLRKAM--NLDITTSDYNDQEIEDNIAYNSTTNGITP-ALPHIKHSWGDAF--PIPNPDW 148 (244)
Q Consensus 74 ~~~~~~~VLdlG~G~G~~~~~~a~~~--~~~v~~~D~~~~~l~~~~~~~~~~~~~~~-~~~~~~~~~~~~~--~~~~~~f 148 (244)
...+|.+|||+|||+|..+..+|+.. ..+|+++|++++++ +.+++|....+... ....+.+..+|.. .....+|
T Consensus 73 ~l~~g~~VLdiG~GsGy~ta~la~l~~~~g~V~~ie~~~~l~-~~a~~~l~~~~~~~~~~~~~~~~~gD~~~~~~~~~~f 151 (224)
T d1i1na_ 73 QLHEGAKALDVGSGSGILTACFARMVGCTGKVIGIDHIKELV-DDSVNNVRKDDPTLLSSGRVQLVVGDGRMGYAEEAPY 151 (224)
T ss_dssp TSCTTCEEEEETCTTSHHHHHHHHHHCTTCEEEEEESCHHHH-HHHHHHHHHHCTHHHHTSSEEEEESCGGGCCGGGCCE
T ss_pred ccCCCCeEEEecCCCCHHHHHHHHHhCCCceEEEEcCCHHHH-HHHHHhccccCcccccccceEEEEeecccccchhhhh
Confidence 56789999999999999998888764 56899999999987 77877776544421 1122333333322 2334689
Q ss_pred cEEEEcccccCCcChHHHHHHHHHHHHhcCCCCceEeec
Q 026036 149 DLILASDILLYVKQYSNLIKSLSVLLKSYKPKDSQVGHL 187 (244)
Q Consensus 149 D~I~~~~~l~~~~~~~~l~~~l~~~~~~lk~gG~~~~~~ 187 (244)
|+|++..++ .+ .+ ..+.+.|||||++++.+
T Consensus 152 D~I~~~~~~-~~--ip------~~l~~~LkpGG~LV~pv 181 (224)
T d1i1na_ 152 DAIHVGAAA-PV--VP------QALIDQLKPGGRLILPV 181 (224)
T ss_dssp EEEEECSBB-SS--CC------HHHHHTEEEEEEEEEEE
T ss_pred hhhhhhcch-hh--cC------HHHHhhcCCCcEEEEEE
Confidence 999999887 32 23 24678999999998753
|
| >d1wxxa2 c.66.1.51 (A:65-382) Hypothetical protein TTHA1280, middle and C-terminal domains {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: hypothetical RNA methyltransferase domain: Hypothetical protein TTHA1280, middle and C-terminal domains species: Thermus thermophilus [TaxId: 274]
Probab=99.39 E-value=2.5e-13 Score=111.32 Aligned_cols=108 Identities=14% Similarity=0.134 Sum_probs=79.8
Q ss_pred ccCCeEEEeCCCCcHHHHHHHHhCCCeEEEEeCChHHHHHHHHHhHHhcCCCCCcceEeeecCCC---CCCCCCCccEEE
Q 026036 76 IERRRCIELGSGTGALAIFLRKAMNLDITTSDYNDQEIEDNIAYNSTTNGITPALPHIKHSWGDA---FPIPNPDWDLIL 152 (244)
Q Consensus 76 ~~~~~VLdlG~G~G~~~~~~a~~~~~~v~~~D~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~fD~I~ 152 (244)
.+|++|||++||+|.+++++|. ++.+|+++|+|+.++ +.+++|+..|++. .+..+..+..+. +....++||+|+
T Consensus 144 ~~g~rVLDl~~gtG~~s~~~a~-g~~~V~~vD~s~~al-~~a~~n~~~ngl~-~~~~i~~d~~~~~~~~~~~~~~fD~Vi 220 (318)
T d1wxxa2 144 FRGERALDVFSYAGGFALHLAL-GFREVVAVDSSAEAL-RRAEENARLNGLG-NVRVLEANAFDLLRRLEKEGERFDLVV 220 (318)
T ss_dssp CCEEEEEEETCTTTHHHHHHHH-HEEEEEEEESCHHHH-HHHHHHHHHTTCT-TEEEEESCHHHHHHHHHHTTCCEEEEE
T ss_pred hCCCeeeccCCCCcHHHHHHHh-cCCcEEeecchHHHH-HHHHHHHHHcCCC-CcceeeccHHHHhhhhHhhhcCCCEEE
Confidence 3789999999999999999875 578999999999997 8999999999984 344444333221 222356899999
Q ss_pred EcccccCCcC------hHHHHHHHHHHHHhcCCCCceEee
Q 026036 153 ASDILLYVKQ------YSNLIKSLSVLLKSYKPKDSQVGH 186 (244)
Q Consensus 153 ~~~~l~~~~~------~~~l~~~l~~~~~~lk~gG~~~~~ 186 (244)
+..+.+.... .....+.+..+.++|+|||.++++
T Consensus 221 ~DpP~~~~~~~~~~~~~~~~~~l~~~a~~lLkpGG~Lv~~ 260 (318)
T d1wxxa2 221 LDPPAFAKGKKDVERAYRAYKEVNLRAIKLLKEGGILATA 260 (318)
T ss_dssp ECCCCSCCSTTSHHHHHHHHHHHHHHHHHTEEEEEEEEEE
T ss_pred EcCCccccchHHHHHHHHHHHHHHHHHHHHcCCCCEEEEE
Confidence 9877543221 223346778888999999987664
|
| >d1vbfa_ c.66.1.7 (A:) Protein-L-isoaspartyl O-methyltransferase {Sulfolobus tokodaii [TaxId: 111955]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Protein-L-isoaspartyl O-methyltransferase domain: Protein-L-isoaspartyl O-methyltransferase species: Sulfolobus tokodaii [TaxId: 111955]
Probab=99.37 E-value=1e-12 Score=102.02 Aligned_cols=103 Identities=11% Similarity=0.128 Sum_probs=73.6
Q ss_pred HHHhhccCcccCCeEEEeCCCCcHHHHHHHHhCCCeEEEEeCChHHHHHHHHHhHHhcCCCCCcceEeeecCCCCC--CC
Q 026036 67 EWLMHHREWIERRRCIELGSGTGALAIFLRKAMNLDITTSDYNDQEIEDNIAYNSTTNGITPALPHIKHSWGDAFP--IP 144 (244)
Q Consensus 67 ~~~~~~~~~~~~~~VLdlG~G~G~~~~~~a~~~~~~v~~~D~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~ 144 (244)
..+++...+.+|.+|||+|||+|..+..+++. ..+|+++|++++.+ +.++++.... .+ +.+..++... ..
T Consensus 60 a~ml~~L~l~~g~~VLdIG~GsGy~ta~La~l-~~~V~aiE~~~~~~-~~A~~~~~~~---~n---v~~~~~d~~~g~~~ 131 (224)
T d1vbfa_ 60 IFMLDELDLHKGQKVLEIGTGIGYYTALIAEI-VDKVVSVEINEKMY-NYASKLLSYY---NN---IKLILGDGTLGYEE 131 (224)
T ss_dssp HHHHHHTTCCTTCEEEEECCTTSHHHHHHHHH-SSEEEEEESCHHHH-HHHHHHHTTC---SS---EEEEESCGGGCCGG
T ss_pred HHHHHHhhhcccceEEEecCCCCHHHHHHHHH-hcccccccccHHHH-HHHHHHHhcc---cc---cccccCchhhcchh
Confidence 34556667889999999999999999888876 77999999999876 6776665432 12 3333333211 12
Q ss_pred CCCccEEEEcccccCCcChHHHHHHHHHHHHhcCCCCceEee
Q 026036 145 NPDWDLILASDILLYVKQYSNLIKSLSVLLKSYKPKDSQVGH 186 (244)
Q Consensus 145 ~~~fD~I~~~~~l~~~~~~~~l~~~l~~~~~~lk~gG~~~~~ 186 (244)
.++||.|++...+ .+ .+ ..+.+.|||||++++-
T Consensus 132 ~~pfD~Iiv~~a~-~~--ip------~~l~~qLk~GGrLV~p 164 (224)
T d1vbfa_ 132 EKPYDRVVVWATA-PT--LL------CKPYEQLKEGGIMILP 164 (224)
T ss_dssp GCCEEEEEESSBB-SS--CC------HHHHHTEEEEEEEEEE
T ss_pred hhhHHHHHhhcch-hh--hh------HHHHHhcCCCCEEEEE
Confidence 4579999998887 32 33 2366889999998875
|
| >d2b78a2 c.66.1.51 (A:69-385) Hypothetical protein SMu776, middle and C-terminal domains {Streptococcus mutans [TaxId: 1309]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: hypothetical RNA methyltransferase domain: Hypothetical protein SMu776, middle and C-terminal domains species: Streptococcus mutans [TaxId: 1309]
Probab=99.35 E-value=2.7e-12 Score=104.83 Aligned_cols=110 Identities=12% Similarity=0.025 Sum_probs=80.7
Q ss_pred ccCCeEEEeCCCCcHHHHHHHHhCCCeEEEEeCChHHHHHHHHHhHHhcCCCC-CcceEeeecCCCC---CCCCCCccEE
Q 026036 76 IERRRCIELGSGTGALAIFLRKAMNLDITTSDYNDQEIEDNIAYNSTTNGITP-ALPHIKHSWGDAF---PIPNPDWDLI 151 (244)
Q Consensus 76 ~~~~~VLdlG~G~G~~~~~~a~~~~~~v~~~D~~~~~l~~~~~~~~~~~~~~~-~~~~~~~~~~~~~---~~~~~~fD~I 151 (244)
.+|++|||++||+|.++++++..+..+|+++|+++.++ +.+++|...|++.. ++..+..+..+.+ .....+||+|
T Consensus 143 ~~g~~VLdlf~~~G~~sl~aa~~ga~~V~~vD~s~~a~-~~a~~N~~~n~l~~~~~~~i~~d~~~~l~~~~~~~~~fD~I 221 (317)
T d2b78a2 143 AAGKTVLNLFSYTAAFSVAAAMGGAMATTSVDLAKRSR-ALSLAHFEANHLDMANHQLVVMDVFDYFKYARRHHLTYDII 221 (317)
T ss_dssp TBTCEEEEETCTTTHHHHHHHHTTBSEEEEEESCTTHH-HHHHHHHHHTTCCCTTEEEEESCHHHHHHHHHHTTCCEEEE
T ss_pred hCCCceeecCCCCcHHHHHHHhCCCceEEEecCCHHHH-HHHHHHHHHhcccCcceEEEEccHHHHHHHHHhhcCCCCEE
Confidence 37899999999999999998877677899999999987 89999999999842 3444433322111 1134589999
Q ss_pred EEcccccCC------cChHHHHHHHHHHHHhcCCCCceEee
Q 026036 152 LASDILLYV------KQYSNLIKSLSVLLKSYKPKDSQVGH 186 (244)
Q Consensus 152 ~~~~~l~~~------~~~~~l~~~l~~~~~~lk~gG~~~~~ 186 (244)
++-.+-|.. ....+..+.++.+.++|+|||.++++
T Consensus 222 i~DPP~f~~~~~~~~~~~~~~~~L~~~a~~ll~pgG~l~~~ 262 (317)
T d2b78a2 222 IIDPPSFARNKKEVFSVSKDYHKLIRQGLEILSENGLIIAS 262 (317)
T ss_dssp EECCCCC-----CCCCHHHHHHHHHHHHHHTEEEEEEEEEE
T ss_pred EEcChhhccchhHHHHHHHHHHHHHHHHHHHcCCCCEEEEE
Confidence 997765321 11234557888899999999987765
|
| >d2fpoa1 c.66.1.46 (A:10-192) Methylase YhhF {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: YhhF-like domain: Methylase YhhF species: Escherichia coli [TaxId: 562]
Probab=99.35 E-value=6.4e-13 Score=100.40 Aligned_cols=123 Identities=12% Similarity=0.071 Sum_probs=80.4
Q ss_pred eechHHHHHHHHhhcc-CcccCCeEEEeCCCCcHHHHHHHHhCCCeEEEEeCChHHHHHHHHHhHHhcCCCCCcceEeee
Q 026036 58 LWPGTFSFAEWLMHHR-EWIERRRCIELGSGTGALAIFLRKAMNLDITTSDYNDQEIEDNIAYNSTTNGITPALPHIKHS 136 (244)
Q Consensus 58 ~w~~~~~l~~~~~~~~-~~~~~~~VLdlG~G~G~~~~~~a~~~~~~v~~~D~~~~~l~~~~~~~~~~~~~~~~~~~~~~~ 136 (244)
+.|.+..+.+-+.... ....+.+|||++||||.+++.++.++..+|+++|.++.++ +.+++|+..++.. .+..+..+
T Consensus 23 ~RPt~~~vre~lfn~l~~~~~~~~vLDlfaGsG~~giealsrGa~~v~~VE~~~~a~-~~~k~N~~~~~~~-~~~ii~~d 100 (183)
T d2fpoa1 23 LRPTTDRVRETLFNWLAPVIVDAQCLDCFAGSGALGLEALSRYAAGATLIEMDRAVS-QQLIKNLATLKAG-NARVVNSN 100 (183)
T ss_dssp ----CHHHHHHHHHHHHHHHTTCEEEETTCTTCHHHHHHHHTTCSEEEEECSCHHHH-HHHHHHHHHTTCC-SEEEECSC
T ss_pred cCcCcHHHHHHHHhhhhcccchhhhhhhhccccceeeeEEecCcceeEEEEEeechh-hHHHHHHhhcccc-ceeeeeec
Confidence 4455544444443322 2347889999999999999999888888999999999987 8899998876653 23333222
Q ss_pred cCCCCCCCCCCccEEEEcccccCCcChHHHHHHHHHHH--HhcCCCCceEee
Q 026036 137 WGDAFPIPNPDWDLILASDILLYVKQYSNLIKSLSVLL--KSYKPKDSQVGH 186 (244)
Q Consensus 137 ~~~~~~~~~~~fD~I~~~~~l~~~~~~~~l~~~l~~~~--~~lk~gG~~~~~ 186 (244)
..+.+.....+||+|++.++ |.....+ +.+..+. ..|+++|.+++.
T Consensus 101 ~~~~l~~~~~~fDlIf~DPP-Y~~~~~~---~~l~~l~~~~~L~~~~iIiiE 148 (183)
T d2fpoa1 101 AMSFLAQKGTPHNIVFVDPP-FRRGLLE---ETINLLEDNGWLADEALIYVE 148 (183)
T ss_dssp HHHHHSSCCCCEEEEEECCS-SSTTTHH---HHHHHHHHTTCEEEEEEEEEE
T ss_pred ccccccccccccCEEEEcCc-cccchHH---HHHHHHHHCCCCCCCeEEEEE
Confidence 22223334568999999766 4544444 4454444 358898876654
|
| >d1u2za_ c.66.1.31 (A:) Catalytic, N-terminal domain of histone methyltransferase Dot1l {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Catalytic, N-terminal domain of histone methyltransferase Dot1l domain: Catalytic, N-terminal domain of histone methyltransferase Dot1l species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=99.34 E-value=3.2e-12 Score=107.22 Aligned_cols=117 Identities=16% Similarity=0.147 Sum_probs=78.4
Q ss_pred HHHHHhhccCcccCCeEEEeCCCCcHHHHHHHHhCC-CeEEEEeCChHHHHHHHHHhHHhcCC-----CCCcceEeeecC
Q 026036 65 FAEWLMHHREWIERRRCIELGSGTGALAIFLRKAMN-LDITTSDYNDQEIEDNIAYNSTTNGI-----TPALPHIKHSWG 138 (244)
Q Consensus 65 l~~~~~~~~~~~~~~~VLdlG~G~G~~~~~~a~~~~-~~v~~~D~~~~~l~~~~~~~~~~~~~-----~~~~~~~~~~~~ 138 (244)
+..-+.+...+.+|.+|||||||+|.+.+.+|...+ ++|+|+|+++.++ +.+++++...+. ..+.....+...
T Consensus 204 ~i~~Il~~l~Lkpgd~fLDLGCG~G~~vl~aA~~~g~~~v~GIDiS~~~i-~~Ak~~~~e~~~~~~~~g~~~~~~~~~~~ 282 (406)
T d1u2za_ 204 FLSDVYQQCQLKKGDTFMDLGSGVGNCVVQAALECGCALSFGCEIMDDAS-DLTILQYEELKKRCKLYGMRLNNVEFSLK 282 (406)
T ss_dssp HHHHHHHHTTCCTTCEEEEESCTTSHHHHHHHHHHCCSEEEEEECCHHHH-HHHHHHHHHHHHHHHHTTBCCCCEEEEES
T ss_pred HHHHHHHHhCCCCCCEEEeCCCCCcHHHHHHHHHcCCCeEEEEeCCHHHH-HHHHHHHHHHhhhhhhhccccccceeeee
Confidence 344455556778999999999999999999887765 5899999999987 777665543211 001112222211
Q ss_pred -CCCCC-----CCCCccEEEEcccccCCcChHHHHHHHHHHHHhcCCCCceEee
Q 026036 139 -DAFPI-----PNPDWDLILASDILLYVKQYSNLIKSLSVLLKSYKPKDSQVGH 186 (244)
Q Consensus 139 -~~~~~-----~~~~fD~I~~~~~l~~~~~~~~l~~~l~~~~~~lk~gG~~~~~ 186 (244)
+.... .-..+|+|+++... + .+++.+.+.++++.|||||++++.
T Consensus 283 ~~f~~~~~~d~~~~~adVV~inn~~-f---~~~l~~~L~ei~r~LKPGGrIVs~ 332 (406)
T d1u2za_ 283 KSFVDNNRVAELIPQCDVILVNNFL-F---DEDLNKKVEKILQTAKVGCKIISL 332 (406)
T ss_dssp SCSTTCHHHHHHGGGCSEEEECCTT-C---CHHHHHHHHHHHTTCCTTCEEEES
T ss_pred echhhccccccccccceEEEEeccc-C---chHHHHHHHHHHHhcCCCcEEEEe
Confidence 11110 11247888886544 3 356779999999999999998875
|
| >d1jg1a_ c.66.1.7 (A:) Protein-L-isoaspartyl O-methyltransferase {Archaeon Pyrococcus furiosus [TaxId: 2261]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Protein-L-isoaspartyl O-methyltransferase domain: Protein-L-isoaspartyl O-methyltransferase species: Archaeon Pyrococcus furiosus [TaxId: 2261]
Probab=99.34 E-value=1.4e-12 Score=100.61 Aligned_cols=109 Identities=15% Similarity=0.218 Sum_probs=80.7
Q ss_pred HHHHHHhhccCcccCCeEEEeCCCCcHHHHHHHHhCCCeEEEEeCChHHHHHHHHHhHHhcCCCCCcceEeeecCCCCC-
Q 026036 64 SFAEWLMHHREWIERRRCIELGSGTGALAIFLRKAMNLDITTSDYNDQEIEDNIAYNSTTNGITPALPHIKHSWGDAFP- 142 (244)
Q Consensus 64 ~l~~~~~~~~~~~~~~~VLdlG~G~G~~~~~~a~~~~~~v~~~D~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~- 142 (244)
.+...+++...+.++.+|||||||||..+..+++..+.+|+++|.+++.+ +.+++|....+.. .+.+..++...
T Consensus 65 ~~~a~ml~~L~l~~g~~VLeIGsGsGY~taila~l~g~~V~~ie~~~~l~-~~a~~~l~~~g~~----nv~~~~gd~~~g 139 (215)
T d1jg1a_ 65 HMVAIMLEIANLKPGMNILEVGTGSGWNAALISEIVKTDVYTIERIPELV-EFAKRNLERAGVK----NVHVILGDGSKG 139 (215)
T ss_dssp HHHHHHHHHHTCCTTCCEEEECCTTSHHHHHHHHHHCSCEEEEESCHHHH-HHHHHHHHHTTCC----SEEEEESCGGGC
T ss_pred hhHHHHHHhhccCccceEEEecCCCChhHHHHHHhhCceeEEEeccHHHH-HHHHHHHHHcCCc----eeEEEECccccC
Confidence 34445566667889999999999999999988877677899999999876 8888888877762 33343444322
Q ss_pred -CCCCCccEEEEcccccCCcChHHHHHHHHHHHHhcCCCCceEee
Q 026036 143 -IPNPDWDLILASDILLYVKQYSNLIKSLSVLLKSYKPKDSQVGH 186 (244)
Q Consensus 143 -~~~~~fD~I~~~~~l~~~~~~~~l~~~l~~~~~~lk~gG~~~~~ 186 (244)
....+||.|++...+ . ..+. .+...|+|||++++.
T Consensus 140 ~~~~~pfD~Iiv~~a~-~--~ip~------~l~~qL~~gGrLv~p 175 (215)
T d1jg1a_ 140 FPPKAPYDVIIVTAGA-P--KIPE------PLIEQLKIGGKLIIP 175 (215)
T ss_dssp CGGGCCEEEEEECSBB-S--SCCH------HHHHTEEEEEEEEEE
T ss_pred CcccCcceeEEeeccc-c--cCCH------HHHHhcCCCCEEEEE
Confidence 234689999998888 3 2332 256789999998875
|
| >d1yzha1 c.66.1.53 (A:8-211) tRNA (guanine-N(7)-)-methyltransferase TrmB {Streptococcus pneumoniae [TaxId: 1313]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: TrmB-like domain: tRNA (guanine-N(7)-)-methyltransferase TrmB species: Streptococcus pneumoniae [TaxId: 1313]
Probab=99.33 E-value=1.6e-11 Score=94.08 Aligned_cols=107 Identities=12% Similarity=0.067 Sum_probs=75.5
Q ss_pred CCeEEEeCCCCcHHHHHHHHhC-CCeEEEEeCChHHHHHHHHHhHHhcCCCCCcceEeeecCCCC-CCCCCCccEEEEcc
Q 026036 78 RRRCIELGSGTGALAIFLRKAM-NLDITTSDYNDQEIEDNIAYNSTTNGITPALPHIKHSWGDAF-PIPNPDWDLILASD 155 (244)
Q Consensus 78 ~~~VLdlG~G~G~~~~~~a~~~-~~~v~~~D~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~fD~I~~~~ 155 (244)
+..|||||||+|...+.+|+.. ...++|+|+++.++ ..+.+++..++++ ++..+..+..+.. .+++.++|.|+++.
T Consensus 32 ~plvLdIGcG~G~~~~~lA~~~p~~~~iGid~~~~~v-~~a~~~~~~~~l~-Ni~~~~~da~~l~~~~~~~~~~~i~i~f 109 (204)
T d1yzha1 32 NPIHVEVGSGKGAFVSGMAKQNPDINYIGIDIQKSVL-SYALDKVLEVGVP-NIKLLWVDGSDLTDYFEDGEIDRLYLNF 109 (204)
T ss_dssp CCEEEEESCTTSHHHHHHHHHCTTSEEEEEESCHHHH-HHHHHHHHHHCCS-SEEEEECCSSCGGGTSCTTCCSEEEEES
T ss_pred CCeEEEEeccCCHHHHHHHHHCCCCceEEEeccHHHH-HHHHHhhhhhccc-cceeeecCHHHHhhhccCCceehhcccc
Confidence 3479999999999999999887 77899999999987 6666666666663 2333333332221 24567899998876
Q ss_pred cccCCcChH-----HHHHHHHHHHHhcCCCCceEee
Q 026036 156 ILLYVKQYS-----NLIKSLSVLLKSYKPKDSQVGH 186 (244)
Q Consensus 156 ~l~~~~~~~-----~l~~~l~~~~~~lk~gG~~~~~ 186 (244)
+-.++.... --...++.++++|||||.+.+.
T Consensus 110 PdPw~K~~h~krRl~~~~~l~~~~~~LkpgG~l~i~ 145 (204)
T d1yzha1 110 SDPWPKKRHEKRRLTYKTFLDTFKRILPENGEIHFK 145 (204)
T ss_dssp CCCCCSGGGGGGSTTSHHHHHHHHHHSCTTCEEEEE
T ss_pred cccccchhhhhhhhhHHHHHHHHHHhCCCCcEEEEE
Confidence 653222110 0137889999999999999886
|
| >d1nw3a_ c.66.1.31 (A:) Catalytic, N-terminal domain of histone methyltransferase Dot1l {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Catalytic, N-terminal domain of histone methyltransferase Dot1l domain: Catalytic, N-terminal domain of histone methyltransferase Dot1l species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.30 E-value=6.2e-12 Score=103.40 Aligned_cols=117 Identities=14% Similarity=0.174 Sum_probs=80.5
Q ss_pred HHHHHHHhhccCcccCCeEEEeCCCCcHHHHHHHHhCC-CeEEEEeCChHHHHHHHHHhHHh-------cCCCCCcceEe
Q 026036 63 FSFAEWLMHHREWIERRRCIELGSGTGALAIFLRKAMN-LDITTSDYNDQEIEDNIAYNSTT-------NGITPALPHIK 134 (244)
Q Consensus 63 ~~l~~~~~~~~~~~~~~~VLdlG~G~G~~~~~~a~~~~-~~v~~~D~~~~~l~~~~~~~~~~-------~~~~~~~~~~~ 134 (244)
..+...+.+...+.++.+|||||||+|.+++.+|+..+ .+++|+|+++.++ +.++.+... .+.. ...+.
T Consensus 137 ~~~~~~~~~~~~l~~~~~vlD~GcG~G~~~~~~a~~~~~~~~~Gid~s~~~~-~~a~~~~~~~~~~~~~~g~~--~~~i~ 213 (328)
T d1nw3a_ 137 FDLVAQMIDEIKMTDDDLFVDLGSGVGQVVLQVAAATNCKHHYGVEKADIPA-KYAETMDREFRKWMKWYGKK--HAEYT 213 (328)
T ss_dssp HHHHHHHHHHSCCCTTCEEEEETCTTSHHHHHHHHHCCCSEEEEEECSHHHH-HHHHHHHHHHHHHHHHHTCC--CCCEE
T ss_pred HHHHHHHHHHcCCCCCCEEEEcCCCCCHHHHHHHHHhCCCeEEEEeCCHHHH-HHHHHHHHHHHHHhhhcccc--CCceE
Confidence 34445555666777899999999999999999888764 5799999999886 666544332 1221 12344
Q ss_pred eecCCCCCC--CCC--CccEEEEcccccCCcChHHHHHHHHHHHHhcCCCCceEee
Q 026036 135 HSWGDAFPI--PNP--DWDLILASDILLYVKQYSNLIKSLSVLLKSYKPKDSQVGH 186 (244)
Q Consensus 135 ~~~~~~~~~--~~~--~fD~I~~~~~l~~~~~~~~l~~~l~~~~~~lk~gG~~~~~ 186 (244)
+..++.... .+. ..|+|+++... + .+++.+.+.++.+.|||||++++.
T Consensus 214 ~~~gd~~~~~~~~~~~~advi~~~~~~-f---~~~~~~~l~e~~r~LKpGg~iv~~ 265 (328)
T d1nw3a_ 214 LERGDFLSEEWRERIANTSVIFVNNFA-F---GPEVDHQLKERFANMKEGGRIVSS 265 (328)
T ss_dssp EEECCTTSHHHHHHHHHCSEEEECCTT-T---CHHHHHHHHHHHTTCCTTCEEEES
T ss_pred EEECcccccccccccCcceEEEEccee-c---chHHHHHHHHHHHhCCCCcEEEEe
Confidence 555554321 112 24788876654 3 356668999999999999998876
|
| >d2igta1 c.66.1.51 (A:1-309) Putative methyltransferase Atu0340 {Agrobacterium tumefaciens [TaxId: 358]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: hypothetical RNA methyltransferase domain: Putative methyltransferase Atu0340 species: Agrobacterium tumefaciens [TaxId: 358]
Probab=99.28 E-value=1.7e-11 Score=99.01 Aligned_cols=106 Identities=18% Similarity=0.192 Sum_probs=77.4
Q ss_pred ccCCeEEEeCCCCcHHHHHHHHhCCCeEEEEeCChHHHHHHHHHhHHhcCCCC-CcceEeeecCCCCCC------CCCCc
Q 026036 76 IERRRCIELGSGTGALAIFLRKAMNLDITTSDYNDQEIEDNIAYNSTTNGITP-ALPHIKHSWGDAFPI------PNPDW 148 (244)
Q Consensus 76 ~~~~~VLdlG~G~G~~~~~~a~~~~~~v~~~D~~~~~l~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~------~~~~f 148 (244)
.++.+|||++||||.+++.++.. +++|+++|.|+.++ +.+++|+..|++.. ++..+ .+|...+ ...+|
T Consensus 131 ~~~~rVLdlf~~tG~~sl~aa~~-GA~V~~VD~s~~al-~~a~~N~~ln~~~~~~~~~i---~~D~~~~l~~~~~~~~~f 205 (309)
T d2igta1 131 DRPLKVLNLFGYTGVASLVAAAA-GAEVTHVDASKKAI-GWAKENQVLAGLEQAPIRWI---CEDAMKFIQREERRGSTY 205 (309)
T ss_dssp SSCCEEEEETCTTCHHHHHHHHT-TCEEEEECSCHHHH-HHHHHHHHHHTCTTSCEEEE---CSCHHHHHHHHHHHTCCB
T ss_pred cCCCeEEEecCCCcHHHHHHHhC-CCeEEEEeChHHHH-HHHHHhhhhhcccCCcEEEE---eCCHHHhHHHHhhcCCCC
Confidence 36789999999999999999865 66999999999987 99999999998854 23333 3332221 24589
Q ss_pred cEEEEcccccCCc-------ChHHHHHHHHHHHHhcCCCCceEee
Q 026036 149 DLILASDILLYVK-------QYSNLIKSLSVLLKSYKPKDSQVGH 186 (244)
Q Consensus 149 D~I~~~~~l~~~~-------~~~~l~~~l~~~~~~lk~gG~~~~~ 186 (244)
|+||+..+-|-.. ....+...++.+.++|+|||.+++.
T Consensus 206 D~IilDPP~f~~~~~~~~~~~~~~~~~l~~~~~~ll~~~g~~ll~ 250 (309)
T d2igta1 206 DIILTDPPKFGRGTHGEVWQLFDHLPLMLDICREILSPKALGLVL 250 (309)
T ss_dssp SEEEECCCSEEECTTCCEEEHHHHHHHHHHHHHHTBCTTCCEEEE
T ss_pred CEEEECCCcccccccchhHHHHHHHHHHHHHHHHhcCCCCCEEEE
Confidence 9999977754211 1223445667788899999976665
|
| >d2fhpa1 c.66.1.46 (A:1-182) Putative methylase EF2452 {Enterococcus faecalis [TaxId: 1351]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: YhhF-like domain: Putative methylase EF2452 species: Enterococcus faecalis [TaxId: 1351]
Probab=99.28 E-value=1.8e-12 Score=97.77 Aligned_cols=125 Identities=17% Similarity=0.093 Sum_probs=84.9
Q ss_pred eeechHHHHHHHHhhc-cCcccCCeEEEeCCCCcHHHHHHHHhCCCeEEEEeCChHHHHHHHHHhHHhcCCCCCcceEee
Q 026036 57 FLWPGTFSFAEWLMHH-REWIERRRCIELGSGTGALAIFLRKAMNLDITTSDYNDQEIEDNIAYNSTTNGITPALPHIKH 135 (244)
Q Consensus 57 ~~w~~~~~l~~~~~~~-~~~~~~~~VLdlG~G~G~~~~~~a~~~~~~v~~~D~~~~~l~~~~~~~~~~~~~~~~~~~~~~ 135 (244)
.+.|.+..+-+-+... ....+|.+||||+||||.+++.++.++..+|+++|.++.++ +.+++|+..++...++..+..
T Consensus 20 ~~RPt~~~vrealFn~l~~~~~~~~vLDlfaGsG~~g~ea~srGa~~v~~ve~~~~a~-~~~~~N~~~~~~~~~~~i~~~ 98 (182)
T d2fhpa1 20 NTRPTTDKVKESIFNMIGPYFDGGMALDLYSGSGGLAIEAVSRGMDKSICIEKNFAAL-KVIKENIAITKEPEKFEVRKM 98 (182)
T ss_dssp SSCCCCHHHHHHHHHHHCSCCSSCEEEETTCTTCHHHHHHHHTTCSEEEEEESCHHHH-HHHHHHHHHHTCGGGEEEEES
T ss_pred CcCcCcHHHHHHHHHHHHHhcCCCEEEEcccccccccceeeecchhHHHHHHHHHHHH-HHHHHHhhhhhcccccccccc
Confidence 3455655555554433 23457899999999999999999988888999999999987 889999887776444444433
Q ss_pred ecCCCCC---CCCCCccEEEEcccccCCcChHHHHHHHHHHHH--hcCCCCceEee
Q 026036 136 SWGDAFP---IPNPDWDLILASDILLYVKQYSNLIKSLSVLLK--SYKPKDSQVGH 186 (244)
Q Consensus 136 ~~~~~~~---~~~~~fD~I~~~~~l~~~~~~~~l~~~l~~~~~--~lk~gG~~~~~ 186 (244)
+..+.+. ....+||+|++-++ |...... ..+..+.. .|+++|.+++-
T Consensus 99 D~~~~l~~~~~~~~~fDlIflDPP-Y~~~~~~---~~l~~i~~~~~L~~~giIi~E 150 (182)
T d2fhpa1 99 DANRALEQFYEEKLQFDLVLLDPP-YAKQEIV---SQLEKMLERQLLTNEAVIVCE 150 (182)
T ss_dssp CHHHHHHHHHHTTCCEEEEEECCC-GGGCCHH---HHHHHHHHTTCEEEEEEEEEE
T ss_pred cchhhhhhhcccCCCcceEEechh-hhhhHHH---HHHHHHHHCCCCCCCEEEEEE
Confidence 3222111 12457999998665 4433333 55666554 68999966553
|
| >d1fp1d2 c.66.1.12 (D:129-372) Chalcone O-methyltransferase {Alfalfa (Medicago sativa) [TaxId: 3879]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Plant O-methyltransferase, C-terminal domain domain: Chalcone O-methyltransferase species: Alfalfa (Medicago sativa) [TaxId: 3879]
Probab=99.26 E-value=5.9e-11 Score=93.33 Aligned_cols=144 Identities=12% Similarity=0.077 Sum_probs=93.8
Q ss_pred ccCCeEEEeCCCCcHHHHHHHHhC-CCeEEEEeCChHHHHHHHHHhHHhcCCCCCcceEeeecCCCCCCCCCCccEEEEc
Q 026036 76 IERRRCIELGSGTGALAIFLRKAM-NLDITTSDYNDQEIEDNIAYNSTTNGITPALPHIKHSWGDAFPIPNPDWDLILAS 154 (244)
Q Consensus 76 ~~~~~VLdlG~G~G~~~~~~a~~~-~~~v~~~D~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fD~I~~~ 154 (244)
....+|||||||+|..+..++++. ..+++..|+.+ .+ + ......++..+..+..++. +..|++++.
T Consensus 80 ~~~~~vlDiGGG~G~~~~~l~~~~P~l~~~v~Dlp~-vi-~-------~~~~~~ri~~~~gd~~~~~----p~~D~~~l~ 146 (244)
T d1fp1d2 80 EGISTLVDVGGGSGRNLELIISKYPLIKGINFDLPQ-VI-E-------NAPPLSGIEHVGGDMFASV----PQGDAMILK 146 (244)
T ss_dssp TTCSEEEEETCTTSHHHHHHHHHCTTCEEEEEECHH-HH-T-------TCCCCTTEEEEECCTTTCC----CCEEEEEEE
T ss_pred cCCcEEEEecCCCcHHHHHHHHHCCCCeEEEecchh-hh-h-------ccCCCCCeEEecCCccccc----ccceEEEEe
Confidence 445799999999999999998887 67899999854 22 1 1222234444443333322 346999999
Q ss_pred ccccCCcChHHHHHHHHHHHHhcCCCCceEeecccccCCCCCCCCC------CCeEEEeeeeccCccchhhHHHHHhhcC
Q 026036 155 DILLYVKQYSNLIKSLSVLLKSYKPKDSQVGHLTKNEQGEGTEGLP------WPAFLMSWRRRIGKEDETIFFTSCENAG 228 (244)
Q Consensus 155 ~~l~~~~~~~~l~~~l~~~~~~lk~gG~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~l~~~G 228 (244)
.++++ .+.++..+.|+++++.|+|||++++.....++........ +-.++.....+ ..+.+++.++++++|
T Consensus 147 ~vLh~-~~de~~~~iL~~~~~aL~pgg~llI~e~v~~~~~~~~~~~~~~~~~d~~m~~~~~g~--ert~~e~~~ll~~AG 223 (244)
T d1fp1d2 147 AVCHN-WSDEKCIEFLSNCHKALSPNGKVIIVEFILPEEPNTSEESKLVSTLDNLMFITVGGR--ERTEKQYEKLSKLSG 223 (244)
T ss_dssp SSGGG-SCHHHHHHHHHHHHHHEEEEEEEEEEEEEECSSCCSSHHHHHHHHHHHHHHHHHSCC--CEEHHHHHHHHHHTT
T ss_pred hhhhh-CCHHHHHHHHHHHHHHcCCCcEEEEEEEEecCCCCCchHHHHHHHHHHHHHhhCCCc--CCCHHHHHHHHHHcC
Confidence 99954 5667788999999999999999999854433322110000 00000011111 123589999999999
Q ss_pred CeEEEec
Q 026036 229 LEVKHLG 235 (244)
Q Consensus 229 f~v~~~~ 235 (244)
|+.+++.
T Consensus 224 F~~v~v~ 230 (244)
T d1fp1d2 224 FSKFQVA 230 (244)
T ss_dssp CSEEEEE
T ss_pred CCceEEE
Confidence 9988774
|
| >d2ifta1 c.66.1.46 (A:11-193) Putative methylase HI0767 {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: YhhF-like domain: Putative methylase HI0767 species: Haemophilus influenzae [TaxId: 727]
Probab=99.16 E-value=6.3e-11 Score=89.19 Aligned_cols=125 Identities=18% Similarity=0.195 Sum_probs=79.2
Q ss_pred eeechHHHHHHHHhhccC-cccCCeEEEeCCCCcHHHHHHHHhCCCeEEEEeCChHHHHHHHHHhHHhcCCCCC-cceEe
Q 026036 57 FLWPGTFSFAEWLMHHRE-WIERRRCIELGSGTGALAIFLRKAMNLDITTSDYNDQEIEDNIAYNSTTNGITPA-LPHIK 134 (244)
Q Consensus 57 ~~w~~~~~l~~~~~~~~~-~~~~~~VLdlG~G~G~~~~~~a~~~~~~v~~~D~~~~~l~~~~~~~~~~~~~~~~-~~~~~ 134 (244)
.+.|.+..+-+.+..... ...+.+||||.||||.+|+.++.++..+|+++|.+..++ ..+++|+...+.... ...+.
T Consensus 22 ~~RPt~~~vrealFn~l~~~~~~~~vLDlFaGsG~~glEalSRGA~~v~fVE~~~~a~-~~ik~Ni~~l~~~~~~~~~~~ 100 (183)
T d2ifta1 22 GLRPTGDRVKETLFNWLMPYIHQSECLDGFAGSGSLGFEALSRQAKKVTFLELDKTVA-NQLKKNLQTLKCSSEQAEVIN 100 (183)
T ss_dssp ------CHHHHHHHHHHHHHHTTCEEEETTCTTCHHHHHHHHTTCSEEEEECSCHHHH-HHHHHHHHHTTCCTTTEEEEC
T ss_pred CcCcCcHHHHHHHHHHhhhhcccceEeecccCccceeeeeeeecceeeEEeecccchh-hhHhhHHhhhccccccccccc
Confidence 345555555554443322 247889999999999999999999888999999999987 899999887766432 22222
Q ss_pred eecCCCC--CCCCCCccEEEEcccccCCcChHHHHHHHHHHH--HhcCCCCceEee
Q 026036 135 HSWGDAF--PIPNPDWDLILASDILLYVKQYSNLIKSLSVLL--KSYKPKDSQVGH 186 (244)
Q Consensus 135 ~~~~~~~--~~~~~~fD~I~~~~~l~~~~~~~~l~~~l~~~~--~~lk~gG~~~~~ 186 (244)
.+..+.+ .....+||+|++-++ |...... +.+..+. ..|+++|.+++-
T Consensus 101 ~d~~~~l~~~~~~~~fDlIFlDPP-Y~~~~~~---~~l~~l~~~~~L~~~~liiiE 152 (183)
T d2ifta1 101 QSSLDFLKQPQNQPHFDVVFLDPP-FHFNLAE---QAISLLCENNWLKPNALIYVE 152 (183)
T ss_dssp SCHHHHTTSCCSSCCEEEEEECCC-SSSCHHH---HHHHHHHHTTCEEEEEEEEEE
T ss_pred ccccccccccccCCcccEEEechh-HhhhhHH---HHHHHHHHhCCcCCCcEEEEE
Confidence 1111111 222447999988555 4544334 5555554 468899866654
|
| >d1r18a_ c.66.1.7 (A:) Protein-L-isoaspartyl O-methyltransferase {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Protein-L-isoaspartyl O-methyltransferase domain: Protein-L-isoaspartyl O-methyltransferase species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]
Probab=99.16 E-value=2.4e-11 Score=94.23 Aligned_cols=103 Identities=15% Similarity=0.160 Sum_probs=68.8
Q ss_pred CcccCCeEEEeCCCCcHHHHHHHHhC-------CCeEEEEeCChHHHHHHHHHhHHhcCCC-CCcceEeeecCCCCC--C
Q 026036 74 EWIERRRCIELGSGTGALAIFLRKAM-------NLDITTSDYNDQEIEDNIAYNSTTNGIT-PALPHIKHSWGDAFP--I 143 (244)
Q Consensus 74 ~~~~~~~VLdlG~G~G~~~~~~a~~~-------~~~v~~~D~~~~~l~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~--~ 143 (244)
...++.+|||||||||..+..+++.. ..+|+++|++++.+ +.+++|....... ..+..+.+..+|... .
T Consensus 77 ~l~~g~~VLeIGtGsGY~ta~la~l~g~~g~~~~~~V~~iE~~~~l~-~~a~~~l~~~~~~~~~~~nv~~~~~d~~~~~~ 155 (223)
T d1r18a_ 77 HLKPGARILDVGSGSGYLTACFYRYIKAKGVDADTRIVGIEHQAELV-RRSKANLNTDDRSMLDSGQLLIVEGDGRKGYP 155 (223)
T ss_dssp TCCTTCEEEEESCTTSHHHHHHHHHHHHSCCCTTCEEEEEESCHHHH-HHHHHHHHHHHHHHHHHTSEEEEESCGGGCCG
T ss_pred ccCCCCeEEEecCCCCHHHHHHHHHhhhccCCcccEEEEEecCHHHH-HHHHHhhhhcchhhcCccEEEEEecccccccc
Confidence 56789999999999999998887653 24899999999876 6676665432110 001122333333221 2
Q ss_pred CCCCccEEEEcccccCCcChHHHHHHHHHHHHhcCCCCceEee
Q 026036 144 PNPDWDLILASDILLYVKQYSNLIKSLSVLLKSYKPKDSQVGH 186 (244)
Q Consensus 144 ~~~~fD~I~~~~~l~~~~~~~~l~~~l~~~~~~lk~gG~~~~~ 186 (244)
..++||.|++...+ . ..++ .+.+.|||||++++.
T Consensus 156 ~~~~fD~Iiv~~a~-~--~~p~------~l~~~Lk~gG~lV~p 189 (223)
T d1r18a_ 156 PNAPYNAIHVGAAA-P--DTPT------ELINQLASGGRLIVP 189 (223)
T ss_dssp GGCSEEEEEECSCB-S--SCCH------HHHHTEEEEEEEEEE
T ss_pred cccceeeEEEEeec-h--hchH------HHHHhcCCCcEEEEE
Confidence 24589999998887 2 2332 367899999998775
|
| >d1kyza2 c.66.1.12 (A:120-362) Caffeic acid/5-hydroxyferulic acid 3/5-O-methyltransferase {Alfalfa (Medicago sativa) [TaxId: 3879]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Plant O-methyltransferase, C-terminal domain domain: Caffeic acid/5-hydroxyferulic acid 3/5-O-methyltransferase species: Alfalfa (Medicago sativa) [TaxId: 3879]
Probab=99.15 E-value=1.3e-10 Score=91.48 Aligned_cols=145 Identities=12% Similarity=0.081 Sum_probs=92.6
Q ss_pred CCeEEEeCCCCcHHHHHHHHhC-CCeEEEEeCChHHHHHHHHHhHHhcCCCCCcceEeeecCCCCCCCCCCccEEEEccc
Q 026036 78 RRRCIELGSGTGALAIFLRKAM-NLDITTSDYNDQEIEDNIAYNSTTNGITPALPHIKHSWGDAFPIPNPDWDLILASDI 156 (244)
Q Consensus 78 ~~~VLdlG~G~G~~~~~~a~~~-~~~v~~~D~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fD~I~~~~~ 156 (244)
..+|||||||+|..++.++++. ..++++.|+.+. + + ......++..+..+..++.| ..|+++...+
T Consensus 82 ~~~vvDvGGG~G~~~~~l~~~~P~l~~~v~Dlp~v-i-~-------~~~~~~r~~~~~~d~~~~~P----~ad~~~l~~v 148 (243)
T d1kyza2 82 LKSLVDVGGGTGAVINTIVSKYPTIKGINFDLPHV-I-E-------DAPSYPGVEHVGGDMFVSIP----KADAVFMKWI 148 (243)
T ss_dssp CSEEEEETCTTSHHHHHHHHHCTTSEEEEEECTTT-T-T-------TCCCCTTEEEEECCTTTCCC----CCSCEECSSS
T ss_pred CcEEEEecCCCcHHHHHHHHHCCCCeEEEcccHHh-h-h-------hcccCCceEEecccccccCC----CcceEEEEEE
Confidence 4689999999999999999987 679999999763 2 2 11222344444444434332 3577888889
Q ss_pred ccCCcChHHHHHHHHHHHHhcCCCCceEeecccccCCCCCC-CCCCC---e-EEEeeeeccCccchhhHHHHHhhcCCeE
Q 026036 157 LLYVKQYSNLIKSLSVLLKSYKPKDSQVGHLTKNEQGEGTE-GLPWP---A-FLMSWRRRIGKEDETIFFTSCENAGLEV 231 (244)
Q Consensus 157 l~~~~~~~~l~~~l~~~~~~lk~gG~~~~~~~~~~~~~~~~-~~~~~---~-~~~~~~~~~~~~~~~~~~~~l~~~Gf~v 231 (244)
++. ...++..+.++++++.|+|||++++...........- ..... . .++.....-...+.+++.++++++||+.
T Consensus 149 lh~-~~d~~~~~iL~~~~~al~pgg~~li~d~~~~~~~~~~~~~~~~~~~d~~ml~~~~~g~ert~~e~~~ll~~AGf~~ 227 (243)
T d1kyza2 149 CHD-WSDEHCLKFLKNCYEALPDNGKVIVAECILPVAPDSSLATKGVVHIDVIMLAHNPGGKERTQKEFEDLAKGAGFQG 227 (243)
T ss_dssp STT-SCHHHHHHHHHHHHHHCCSSSCEEEEECEECSSCCCCHHHHHHHHHHHHHHHHCSSCCCEEHHHHHHHHHHHCCSC
T ss_pred eec-CCHHHHHHHHHHHHHhcCCCceEEEEEEEecCCCCCchhhHHHHHHHHHHHhhCCCCCcCCHHHHHHHHHHcCCCc
Confidence 844 5667888999999999999999998844432221110 00000 0 0000100011123578999999999998
Q ss_pred EEecc
Q 026036 232 KHLGS 236 (244)
Q Consensus 232 ~~~~~ 236 (244)
+++..
T Consensus 228 vkv~~ 232 (243)
T d1kyza2 228 FKVHC 232 (243)
T ss_dssp EEEEE
T ss_pred EEEEE
Confidence 87753
|
| >d1uwva2 c.66.1.40 (A:75-432) rRNA (Uracil-5-)-methyltransferase RumA, catalytic domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: (Uracil-5-)-methyltransferase domain: rRNA (Uracil-5-)-methyltransferase RumA, catalytic domain species: Escherichia coli [TaxId: 562]
Probab=99.15 E-value=2.3e-10 Score=94.94 Aligned_cols=157 Identities=13% Similarity=0.137 Sum_probs=102.3
Q ss_pred CceEEEEecccCCCCcceeechHHHHHHHHhhccCcccCCeEEEeCCCCcHHHHHHHHhCCCeEEEEeCChHHHHHHHHH
Q 026036 40 EMELVIREFAFHQLNANFLWPGTFSFAEWLMHHREWIERRRCIELGSGTGALAIFLRKAMNLDITTSDYNDQEIEDNIAY 119 (244)
Q Consensus 40 ~~~~~~~~~~~~~~~~~~~w~~~~~l~~~~~~~~~~~~~~~VLdlG~G~G~~~~~~a~~~~~~v~~~D~~~~~l~~~~~~ 119 (244)
|..+.+...+|++.+.. .+..|.+.+.+.....++.+||||.||+|.+++.+|+. ..+|+|+|.++.++ +.+++
T Consensus 179 g~~~~i~p~sFfQ~N~~----~~e~l~~~v~~~~~~~~~~~vlDLycG~G~fsl~La~~-~~~V~gvE~~~~ai-~~A~~ 252 (358)
T d1uwva2 179 GLRLTFSPRDFIQVNAG----VNQKMVARALEWLDVQPEDRVLDLFCGMGNFTLPLATQ-AASVVGVEGVPALV-EKGQQ 252 (358)
T ss_dssp TEEEECCSSSCCCSBHH----HHHHHHHHHHHHHTCCTTCEEEEESCTTTTTHHHHHTT-SSEEEEEESCHHHH-HHHHH
T ss_pred CEEEEECCchhhccchh----hhhHHHHHHHHhhccCCCceEEEecccccccchhcccc-ccEEEeccCcHHHH-HHHHH
Confidence 33444444455555433 57778888777767778889999999999999999875 78999999999987 88999
Q ss_pred hHHhcCCCCCcceEeeecCCCCCC---CCCCccEEEEcccccCCcChHHHHHHHHHHHHhcCCCCceEeecccccCCCCC
Q 026036 120 NSTTNGITPALPHIKHSWGDAFPI---PNPDWDLILASDILLYVKQYSNLIKSLSVLLKSYKPKDSQVGHLTKNEQGEGT 196 (244)
Q Consensus 120 ~~~~~~~~~~~~~~~~~~~~~~~~---~~~~fD~I~~~~~l~~~~~~~~l~~~l~~~~~~lk~gG~~~~~~~~~~~~~~~ 196 (244)
|+..|++. ++..+..+..+.+.. ...++|+|+..++= .. . .+.++.+.+. +|.-.
T Consensus 253 na~~n~i~-n~~~~~~~~~~~~~~~~~~~~~~d~vilDPPR-~G--~---~~~~~~l~~~-~~~~i-------------- 310 (358)
T d1uwva2 253 NARLNGLQ-NVTFYHENLEEDVTKQPWAKNGFDKVLLDPAR-AG--A---AGVMQQIIKL-EPIRI-------------- 310 (358)
T ss_dssp HHHHTTCC-SEEEEECCTTSCCSSSGGGTTCCSEEEECCCT-TC--C---HHHHHHHHHH-CCSEE--------------
T ss_pred hHHhcccc-cceeeecchhhhhhhhhhhhccCceEEeCCCC-cc--H---HHHHHHHHHc-CCCEE--------------
Confidence 99999984 334444333333322 23579999874442 21 2 2556666654 44432
Q ss_pred CCCCCCeEEEeeeeccCccchhhHHHHHhhcCCeEEEec
Q 026036 197 EGLPWPAFLMSWRRRIGKEDETIFFTSCENAGLEVKHLG 235 (244)
Q Consensus 197 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gf~v~~~~ 235 (244)
++.++.+.... +++ ..+.+.||+++++.
T Consensus 311 -------vYVSCnp~Tla---RDl-~~l~~~gy~l~~i~ 338 (358)
T d1uwva2 311 -------VYVSCNPATLA---RDS-EALLKAGYTIARLA 338 (358)
T ss_dssp -------EEEESCHHHHH---HHH-HHHHHTTCEEEEEE
T ss_pred -------EEEeCCHHHHH---HHH-HHHHHCCCeEeEEE
Confidence 33445444332 233 23456799988774
|
| >d1fp2a2 c.66.1.12 (A:109-352) Isoflavone O-methyltransferase {Alfalfa (Medicago sativa) [TaxId: 3879]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Plant O-methyltransferase, C-terminal domain domain: Isoflavone O-methyltransferase species: Alfalfa (Medicago sativa) [TaxId: 3879]
Probab=99.10 E-value=1e-09 Score=86.16 Aligned_cols=142 Identities=15% Similarity=0.155 Sum_probs=91.1
Q ss_pred CCeEEEeCCCCcHHHHHHHHhC-CCeEEEEeCChHHHHHHHHHhHHhcCCCCCcceEeeecCCCCCCCCCCccEEEEccc
Q 026036 78 RRRCIELGSGTGALAIFLRKAM-NLDITTSDYNDQEIEDNIAYNSTTNGITPALPHIKHSWGDAFPIPNPDWDLILASDI 156 (244)
Q Consensus 78 ~~~VLdlG~G~G~~~~~~a~~~-~~~v~~~D~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fD~I~~~~~ 156 (244)
..+|||||||+|..+..++++. ..+++..|..+ .+ +. .....++..+. +|.... ...+|++++..+
T Consensus 81 ~~~vvDvGGG~G~~~~~l~~~~P~l~~~v~Dlp~-vi-~~-------~~~~~rv~~~~---gD~f~~-~p~aD~~~l~~v 147 (244)
T d1fp2a2 81 LESIVDVGGGTGTTAKIICETFPKLKCIVFDRPQ-VV-EN-------LSGSNNLTYVG---GDMFTS-IPNADAVLLKYI 147 (244)
T ss_dssp CSEEEEETCTTSHHHHHHHHHCTTCEEEEEECHH-HH-TT-------CCCBTTEEEEE---CCTTTC-CCCCSEEEEESC
T ss_pred ceEEEEecCCccHHHHHHHHhCCCCeEEEecCHH-HH-Hh-------CcccCceEEEe---cCcccC-CCCCcEEEEEee
Confidence 4689999999999999999887 67999999854 23 21 12233444444 333322 236899999999
Q ss_pred ccCCcChHHHHHHHHHHHHhcCCC---CceEeecccccCCCCCC-CCCCCe-E---EEeeeeccCccchhhHHHHHhhcC
Q 026036 157 LLYVKQYSNLIKSLSVLLKSYKPK---DSQVGHLTKNEQGEGTE-GLPWPA-F---LMSWRRRIGKEDETIFFTSCENAG 228 (244)
Q Consensus 157 l~~~~~~~~l~~~l~~~~~~lk~g---G~~~~~~~~~~~~~~~~-~~~~~~-~---~~~~~~~~~~~~~~~~~~~l~~~G 228 (244)
+ |..+.++..+.|+++++.|+|| |++++.....+.....- ...... + +.....+ ..+.+++.++++++|
T Consensus 148 L-Hdw~d~~~~~iL~~~~~al~pgg~~~~lli~e~~~~~~~~~~~~~~~~~~~dl~m~~~~G~--ert~~e~~~ll~~AG 224 (244)
T d1fp2a2 148 L-HNWTDKDCLRILKKCKEAVTNDGKRGKVTIIDMVIDKKKDENQVTQIKLLMDVNMACLNGK--ERNEEEWKKLFIEAG 224 (244)
T ss_dssp G-GGSCHHHHHHHHHHHHHHHSGGGCCCEEEEEECEECTTTSCHHHHHHHHHHHHHGGGGTCC--CEEHHHHHHHHHHTT
T ss_pred c-ccCChHHHHHHHHHHHHHcCcccCCcEEEEEEeecCCCCCCchHHHHHHHHHHHHHhCCCc--CCCHHHHHHHHHHcC
Confidence 9 5556677889999999999998 66776633332221100 000000 0 0111111 123589999999999
Q ss_pred CeEEEec
Q 026036 229 LEVKHLG 235 (244)
Q Consensus 229 f~v~~~~ 235 (244)
|+++++.
T Consensus 225 f~~~~i~ 231 (244)
T d1fp2a2 225 FQHYKIS 231 (244)
T ss_dssp CCEEEEE
T ss_pred CceEEEE
Confidence 9998874
|
| >d2cl5a1 c.66.1.1 (A:3-216) Catechol O-methyltransferase, COMT {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: COMT-like domain: Catechol O-methyltransferase, COMT species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=99.00 E-value=3.2e-10 Score=87.26 Aligned_cols=105 Identities=11% Similarity=0.062 Sum_probs=73.0
Q ss_pred cCCeEEEeCCCCcHHHHHHHHhC--CCeEEEEeCChHHHHHHHHHhHHhcCCCCCcceEeeecCCCCC-----CCCCCcc
Q 026036 77 ERRRCIELGSGTGALAIFLRKAM--NLDITTSDYNDQEIEDNIAYNSTTNGITPALPHIKHSWGDAFP-----IPNPDWD 149 (244)
Q Consensus 77 ~~~~VLdlG~G~G~~~~~~a~~~--~~~v~~~D~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~fD 149 (244)
+.++|||+|||+|..++.+|+.. +.+|+++|++++++ +.++.+....++..++..+..+..+.++ ....+||
T Consensus 56 kpk~ILEiGt~~G~Sti~la~al~~~g~v~sid~~~~~~-~~a~~~~~~~gl~~~i~l~~Gd~~e~l~~l~~~~~~~~~D 134 (214)
T d2cl5a1 56 SPSLVLELGAYCGYSAVRMARLLQPGARLLTMEMNPDYA-AITQQMLNFAGLQDKVTILNGASQDLIPQLKKKYDVDTLD 134 (214)
T ss_dssp CCSEEEEECCTTSHHHHHHHTTCCTTCEEEEEESCHHHH-HHHHHHHHHHTCGGGEEEEESCHHHHGGGHHHHSCCCCEE
T ss_pred CCCEEEEEccCchhHHHHHHHhCCCccEEEEEeccHHHH-HHHHHHHHHcCCCccceeeeccccccccchhhcccccccc
Confidence 45799999999999999998765 67999999999986 8888888888876555544333322222 2345799
Q ss_pred EEEEcccccCCcChHHHHHHHHHHHHhcCCCCceEee
Q 026036 150 LILASDILLYVKQYSNLIKSLSVLLKSYKPKDSQVGH 186 (244)
Q Consensus 150 ~I~~~~~l~~~~~~~~l~~~l~~~~~~lk~gG~~~~~ 186 (244)
+|+.- .- +.. ......+.+..++|+|||.+++-
T Consensus 135 ~ifiD-~~--~~~-~~~~~~l~~~~~lLkpGGvIv~D 167 (214)
T d2cl5a1 135 MVFLD-HW--KDR-YLPDTLLLEKCGLLRKGTVLLAD 167 (214)
T ss_dssp EEEEC-SC--GGG-HHHHHHHHHHTTCEEEEEEEEES
T ss_pred eeeec-cc--ccc-cccHHHHHHHhCccCCCcEEEEe
Confidence 99873 21 122 12223456667889999965553
|
| >d1af7a2 c.66.1.8 (A:92-284) Chemotaxis receptor methyltransferase CheR, C-terminal domain {Salmonella typhimurium [TaxId: 90371]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Chemotaxis receptor methyltransferase CheR, C-terminal domain domain: Chemotaxis receptor methyltransferase CheR, C-terminal domain species: Salmonella typhimurium [TaxId: 90371]
Probab=98.99 E-value=2.6e-10 Score=86.45 Aligned_cols=108 Identities=14% Similarity=0.130 Sum_probs=67.0
Q ss_pred cCCeEEEeCCCCcHH----HHHHHHhC-----CCeEEEEeCChHHHHHHHHHhHH----hcCCC--------------CC
Q 026036 77 ERRRCIELGSGTGAL----AIFLRKAM-----NLDITTSDYNDQEIEDNIAYNST----TNGIT--------------PA 129 (244)
Q Consensus 77 ~~~~VLdlG~G~G~~----~~~~a~~~-----~~~v~~~D~~~~~l~~~~~~~~~----~~~~~--------------~~ 129 (244)
+..||++.|||||.- ++.+.... ..+|+|+|+++.++ +.++...- ...++ ..
T Consensus 24 ~~lrIwsaGCstGeE~YSlA~~l~e~~~~~~~~~~I~atDi~~~~l-~~A~~g~y~~~~~~~~~~~~~~~yf~~~~~~~~ 102 (193)
T d1af7a2 24 GEYRVWSAAASTGEEPYSIAITLADALGMAPGRWKVFASDIDTEVL-EKARSGIYRLSELKTLSPQQLQRYFMRGTGPHE 102 (193)
T ss_dssp SCEEEEESCCTTTHHHHHHHHHHHHHHCSCTTSEEEEEEESCHHHH-HHHHHTEEEGGGGTTSCHHHHHHHEEECCTTSC
T ss_pred CCeEEEEeCCCCchhHHHHHHHHHHhhhhcCCceEEEeecCChHHh-hHhhcCcccHHHHhhhhHHHHhhceeecCCCcc
Confidence 446999999999963 33333321 23699999999987 55542210 00000 00
Q ss_pred ---------cceEeeecCCCC---CCCCCCccEEEEcccccCCcChHHHHHHHHHHHHhcCCCCceEee
Q 026036 130 ---------LPHIKHSWGDAF---PIPNPDWDLILASDILLYVKQYSNLIKSLSVLLKSYKPKDSQVGH 186 (244)
Q Consensus 130 ---------~~~~~~~~~~~~---~~~~~~fD~I~~~~~l~~~~~~~~l~~~l~~~~~~lk~gG~~~~~ 186 (244)
...+.+...+.. +...++||+|+|.+++ ...+.+...++++.+++.|+|||.+++.
T Consensus 103 ~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~fDvI~CRNVL-iYf~~~~~~~vl~~l~~~L~pGG~L~lG 170 (193)
T d1af7a2 103 GLVRVRQELANYVEFSSVNLLEKQYNVPGPFDAIFCRNVM-IYFDKTTQEDILRRFVPLLKPDGLLFAG 170 (193)
T ss_dssp SEEEECHHHHTTEEEEECCTTCSSCCCCCCEEEEEECSSG-GGSCHHHHHHHHHHHGGGEEEEEEEEEC
T ss_pred ceeehHHHHHHHHHHhhhhccccccCCCCCccEEEeehhH-HhcCHHHHHHHHHHHHHHhCCCcEEEEe
Confidence 000111111221 2234689999999999 3345566679999999999999987776
|
| >d2avda1 c.66.1.1 (A:44-262) COMT domain-containing protein 1, COMTD1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: COMT-like domain: COMT domain-containing protein 1, COMTD1 species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.99 E-value=1.8e-10 Score=88.91 Aligned_cols=114 Identities=14% Similarity=0.067 Sum_probs=80.5
Q ss_pred HHHHhhccCcccCCeEEEeCCCCcHHHHHHHHhC--CCeEEEEeCChHHHHHHHHHhHHhcCCCCCcceEeeecCCCC--
Q 026036 66 AEWLMHHREWIERRRCIELGSGTGALAIFLRKAM--NLDITTSDYNDQEIEDNIAYNSTTNGITPALPHIKHSWGDAF-- 141 (244)
Q Consensus 66 ~~~~~~~~~~~~~~~VLdlG~G~G~~~~~~a~~~--~~~v~~~D~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~-- 141 (244)
.+++.........++|||||||+|..++.+|... +.+|+.+|.+++.. +.++++....+...++..+..+..+.+
T Consensus 48 g~lL~~L~~~~~~k~vLEiGt~~GyStl~~a~al~~~g~i~tie~~~~~~-~~A~~~~~~ag~~~~i~~~~Gda~e~l~~ 126 (219)
T d2avda1 48 AQLLANLARLIQAKKALDLGTFTGYSALALALALPADGRVVTCEVDAQPP-ELGRPLWRQAEAEHKIDLRLKPALETLDE 126 (219)
T ss_dssp HHHHHHHHHHTTCCEEEEECCTTSHHHHHHHTTSCTTCEEEEEESCSHHH-HHHHHHHHHTTCTTTEEEEESCHHHHHHH
T ss_pred HHHHHHHHHccCCCeEEEEechhhHHHHHHHHhCCCCceEEEEeechhHH-HHHHHHHHhcCccceEEEEEeehhhcchh
Confidence 3333333334456899999999999999998765 57999999999876 888899988888665554433222211
Q ss_pred ---CCCCCCccEEEEcccccCCcChHHHHHHHHHHHHhcCCCCceEee
Q 026036 142 ---PIPNPDWDLILASDILLYVKQYSNLIKSLSVLLKSYKPKDSQVGH 186 (244)
Q Consensus 142 ---~~~~~~fD~I~~~~~l~~~~~~~~l~~~l~~~~~~lk~gG~~~~~ 186 (244)
....++||+|+.- .- .......++.+.+.|+|||.+++.
T Consensus 127 ~~~~~~~~~fD~ifiD-~d-----k~~y~~~~~~~~~lL~~GGvii~D 168 (219)
T d2avda1 127 LLAAGEAGTFDVAVVD-AD-----KENCSAYYERCLQLLRPGGILAVL 168 (219)
T ss_dssp HHHTTCTTCEEEEEEC-SC-----STTHHHHHHHHHHHEEEEEEEEEE
T ss_pred hhhhcccCCccEEEEe-CC-----HHHHHHHHHHHHHHhcCCcEEEEe
Confidence 1234689999983 21 223347778889999999987775
|
| >d2f8la1 c.66.1.45 (A:2-329) Hypothetical protein Lmo1582 {Listeria monocytogenes [TaxId: 1639]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: N-6 DNA Methylase-like domain: Hypothetical protein Lmo1582 species: Listeria monocytogenes [TaxId: 1639]
Probab=98.97 E-value=8.6e-10 Score=90.36 Aligned_cols=123 Identities=11% Similarity=0.023 Sum_probs=80.6
Q ss_pred HHHHHHHHhhccCcccCCeEEEeCCCCcHHHHHHHHhC------CCeEEEEeCChHHHHHHHHHhHHhcCCCCCcceEee
Q 026036 62 TFSFAEWLMHHREWIERRRCIELGSGTGALAIFLRKAM------NLDITTSDYNDQEIEDNIAYNSTTNGITPALPHIKH 135 (244)
Q Consensus 62 ~~~l~~~~~~~~~~~~~~~VLdlG~G~G~~~~~~a~~~------~~~v~~~D~~~~~l~~~~~~~~~~~~~~~~~~~~~~ 135 (244)
+..|++.+.......++.+|||.|||+|.+.+.+.... ..+++|+|+++.++ ..++.|....+... .....
T Consensus 102 ~~~m~~l~~~~~~~~~~~~vlDp~~GsG~~l~~~~~~l~~~~~~~~~~~g~di~~~~~-~~a~~~~~~~~~~~--~~~~~ 178 (328)
T d2f8la1 102 GFIVAYLLEKVIQKKKNVSILDPACGTANLLTTVINQLELKGDVDVHASGVDVDDLLI-SLALVGADLQRQKM--TLLHQ 178 (328)
T ss_dssp HHHHHHHHHHHHTTCSEEEEEETTCTTSHHHHHHHHHHHTTSSCEEEEEEEESCHHHH-HHHHHHHHHHTCCC--EEEES
T ss_pred HHHHHHHHHHHhCCCCCCEEEeCCCCcchhHHHHHHHHHhccCccceEEEecccHHHH-HHHHHHHHHhhhhh--hhhcc
Confidence 34566665554445567899999999999988876432 33699999999886 77777777665521 11211
Q ss_pred ecCCCCCCCCCCccEEEEcccccCCcChH---------------HHHHHHHHHHHhcCCCCceEeeccc
Q 026036 136 SWGDAFPIPNPDWDLILASDILLYVKQYS---------------NLIKSLSVLLKSYKPKDSQVGHLTK 189 (244)
Q Consensus 136 ~~~~~~~~~~~~fD~I~~~~~l~~~~~~~---------------~l~~~l~~~~~~lk~gG~~~~~~~~ 189 (244)
+. .......+||+|++++++-...... .-...+..+.+.|+|||+++++++.
T Consensus 179 d~--~~~~~~~~fD~vi~NPPy~~~~~~~~~~~~~~~~~~~~~~~~~~Fi~~~~~~Lk~~G~~~~I~p~ 245 (328)
T d2f8la1 179 DG--LANLLVDPVDVVISDLPVGYYPDDENAKTFELCREEGHSFAHFLFIEQGMRYTKPGGYLFFLVPD 245 (328)
T ss_dssp CT--TSCCCCCCEEEEEEECCCSEESCHHHHTTSTTCCSSSCEEHHHHHHHHHHHTEEEEEEEEEEEEG
T ss_pred cc--ccccccccccccccCCCCCCCccchhhhhcchhcccCcchHHHHHHHHHHHhcCCCCceEEEecC
Confidence 11 1223446899999999862111100 1123588899999999998877443
|
| >d1susa1 c.66.1.1 (A:21-247) Caffeoyl-CoA O-methyltransferase {Alfalfa (Medicago sativa) [TaxId: 3879]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: COMT-like domain: Caffeoyl-CoA O-methyltransferase species: Alfalfa (Medicago sativa) [TaxId: 3879]
Probab=98.94 E-value=8.4e-10 Score=85.47 Aligned_cols=105 Identities=15% Similarity=0.084 Sum_probs=77.0
Q ss_pred ccCCeEEEeCCCCcHHHHHHHHhC--CCeEEEEeCChHHHHHHHHHhHHhcCCCCCcceEeeecCCCCCC------CCCC
Q 026036 76 IERRRCIELGSGTGALAIFLRKAM--NLDITTSDYNDQEIEDNIAYNSTTNGITPALPHIKHSWGDAFPI------PNPD 147 (244)
Q Consensus 76 ~~~~~VLdlG~G~G~~~~~~a~~~--~~~v~~~D~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~ 147 (244)
...++|||||+++|..++.+|+.. +.+|+.+|.+++.. +.++++....+...++..+..+..+.++. ..++
T Consensus 58 ~~~k~iLEiGT~~GyStl~la~al~~~g~v~tie~~~~~~-~~A~~~~~~~g~~~~i~~~~g~a~~~L~~l~~~~~~~~~ 136 (227)
T d1susa1 58 INAKNTMEIGVYTGYSLLATALAIPEDGKILAMDINKENY-ELGLPVIKKAGVDHKIDFREGPALPVLDEMIKDEKNHGS 136 (227)
T ss_dssp HTCCEEEEECCGGGHHHHHHHHHSCTTCEEEEEESCCHHH-HHHHHHHHHTTCGGGEEEEESCHHHHHHHHHHCGGGTTC
T ss_pred cCCCcEEEecchhhhhHHHHHhhCCCCcEEEEEeccchhH-HHHHHHHHHhccccceeeeehHHHHHHHHHHhccccCCc
Confidence 355799999999999999998765 67999999999876 88888888888755444443322222211 2457
Q ss_pred ccEEEEcccccCCcChHHHHHHHHHHHHhcCCCCceEeec
Q 026036 148 WDLILASDILLYVKQYSNLIKSLSVLLKSYKPKDSQVGHL 187 (244)
Q Consensus 148 fD~I~~~~~l~~~~~~~~l~~~l~~~~~~lk~gG~~~~~~ 187 (244)
||+|+. |.- + ......++.+.+.|+|||.+++..
T Consensus 137 fD~iFi-Da~--k---~~y~~~~e~~~~ll~~gGiii~DN 170 (227)
T d1susa1 137 YDFIFV-DAD--K---DNYLNYHKRLIDLVKVGGVIGYDN 170 (227)
T ss_dssp BSEEEE-CSC--S---TTHHHHHHHHHHHBCTTCCEEEET
T ss_pred eeEEEe-ccc--h---hhhHHHHHHHHhhcCCCcEEEEcc
Confidence 999998 442 2 233477888899999999888763
|
| >d1m6ya2 c.66.1.23 (A:2-114,A:216-294) TM0872, methyltransferase domain {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: MraW-like putative methyltransferases domain: TM0872, methyltransferase domain species: Thermotoga maritima [TaxId: 2336]
Probab=98.82 E-value=7.3e-09 Score=78.02 Aligned_cols=116 Identities=13% Similarity=0.033 Sum_probs=78.6
Q ss_pred HhhccCcccCCeEEEeCCCCcHHHHHHHHhC-CCeEEEEeCChHHHHHHHHHhHHhcCCCCCcceEeeecCCC----CCC
Q 026036 69 LMHHREWIERRRCIELGSGTGALAIFLRKAM-NLDITTSDYNDQEIEDNIAYNSTTNGITPALPHIKHSWGDA----FPI 143 (244)
Q Consensus 69 ~~~~~~~~~~~~VLdlG~G~G~~~~~~a~~~-~~~v~~~D~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~ 143 (244)
+.+...+.++..+||.+||+|..+..+++.. ..+|+++|.+++|+ +.++++....+. ++..+.....+. ...
T Consensus 15 vi~~l~~~~~~~~lD~t~G~Gghs~~il~~~~~~~vi~~D~d~~~l-~~a~~~l~~~~~--r~~~~~~~f~~~~~~~~~~ 91 (192)
T d1m6ya2 15 VIEFLKPEDEKIILDCTVGEGGHSRAILEHCPGCRIIGIDVDSEVL-RIAEEKLKEFSD--RVSLFKVSYREADFLLKTL 91 (192)
T ss_dssp HHHHHCCCTTCEEEETTCTTSHHHHHHHHHCTTCEEEEEESCHHHH-HHHHHHTGGGTT--TEEEEECCGGGHHHHHHHT
T ss_pred HHHhhCCCCCCEEEEecCCCcHHHHHHHhcCCCCeEEEeechHHHH-HHHHHhhccccc--cccchhHHHhhHHHHHHHc
Confidence 3333456688999999999999999988875 67999999999998 778776654332 223332221110 012
Q ss_pred CCCCccEEEEcccccCC-------cChHHHHHHHHHHHHhcCCCCceEeecc
Q 026036 144 PNPDWDLILASDILLYV-------KQYSNLIKSLSVLLKSYKPKDSQVGHLT 188 (244)
Q Consensus 144 ~~~~fD~I~~~~~l~~~-------~~~~~l~~~l~~~~~~lk~gG~~~~~~~ 188 (244)
..++||.|+.--.+ .. .....+.+.+....++|+|||++++.++
T Consensus 92 ~~~~vdgIl~DlGv-Ss~Qld~~~r~~~~~~~~L~~a~~~Lk~gG~l~ii~f 142 (192)
T d1m6ya2 92 GIEKVDGILMDLGV-STYQLKGENRELENLKEFLKKAEDLLNPGGRIVVISF 142 (192)
T ss_dssp TCSCEEEEEEECSC-CHHHHHTSHTHHHHHHHHHHHGGGGEEEEEEEEEEES
T ss_pred CCCCcceeeeccch-hHhhhhhhhccchhHHHHHHHHHHhcCCCCeeeeecc
Confidence 34679988763222 11 2344566888889999999999887743
|
| >d1jsxa_ c.66.1.20 (A:) Glucose-inhibited division protein B (GidB) {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Glucose-inhibited division protein B (GidB) domain: Glucose-inhibited division protein B (GidB) species: Escherichia coli [TaxId: 562]
Probab=98.79 E-value=1.6e-08 Score=76.94 Aligned_cols=99 Identities=13% Similarity=0.129 Sum_probs=70.2
Q ss_pred cCCeEEEeCCCCcHHHHHHHHhC-CCeEEEEeCChHHHHHHHHHhHHhcCCCCCcceEeeecCCCCCCCCCCccEEEEcc
Q 026036 77 ERRRCIELGSGTGALAIFLRKAM-NLDITTSDYNDQEIEDNIAYNSTTNGITPALPHIKHSWGDAFPIPNPDWDLILASD 155 (244)
Q Consensus 77 ~~~~VLdlG~G~G~~~~~~a~~~-~~~v~~~D~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fD~I~~~~ 155 (244)
++.+|+|+|||.|.+|+.+|-.. ..+++.+|.+..-+ ..++.-+...+++ ++..+.-+..+. ....+||+|++..
T Consensus 65 ~~~~ilDiGsGaG~PGi~laI~~p~~~~~Lves~~KK~-~FL~~~~~~L~L~-nv~v~~~R~E~~--~~~~~fD~V~sRA 140 (207)
T d1jsxa_ 65 QGERFIDVGTGPGLPGIPLSIVRPEAHFTLLDSLGKRV-RFLRQVQHELKLE-NIEPVQSRVEEF--PSEPPFDGVISRA 140 (207)
T ss_dssp CSSEEEEETCTTTTTHHHHHHHCTTSEEEEEESCHHHH-HHHHHHHHHTTCS-SEEEEECCTTTS--CCCSCEEEEECSC
T ss_pred cCCceeeeeccCCceeeehhhhcccceEEEEecchHHH-HHHHHHHHHcCCc-ceeeeccchhhh--ccccccceehhhh
Confidence 56799999999999999998776 67999999998765 6666655555552 233333333221 1235799998854
Q ss_pred cccCCcChHHHHHHHHHHHHhcCCCCceEee
Q 026036 156 ILLYVKQYSNLIKSLSVLLKSYKPKDSQVGH 186 (244)
Q Consensus 156 ~l~~~~~~~~l~~~l~~~~~~lk~gG~~~~~ 186 (244)
+- ++...+.-..+.++++|++++.
T Consensus 141 ~~-------~~~~ll~~~~~~l~~~g~~~~~ 164 (207)
T d1jsxa_ 141 FA-------SLNDMVSWCHHLPGEQGRFYAL 164 (207)
T ss_dssp SS-------SHHHHHHHHTTSEEEEEEEEEE
T ss_pred hc-------CHHHHHHHHHHhcCCCcEEEEE
Confidence 42 3447777788999999987664
|
| >d1xdza_ c.66.1.20 (A:) Glucose-inhibited division protein B (GidB) {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Glucose-inhibited division protein B (GidB) domain: Glucose-inhibited division protein B (GidB) species: Bacillus subtilis [TaxId: 1423]
Probab=98.72 E-value=5.3e-08 Score=75.42 Aligned_cols=101 Identities=14% Similarity=0.124 Sum_probs=68.7
Q ss_pred ccCCeEEEeCCCCcHHHHHHHHhC-CCeEEEEeCChHHHHHHHHHhHHhcCCCCCcceEeeecCC--CCCCCCCCccEEE
Q 026036 76 IERRRCIELGSGTGALAIFLRKAM-NLDITTSDYNDQEIEDNIAYNSTTNGITPALPHIKHSWGD--AFPIPNPDWDLIL 152 (244)
Q Consensus 76 ~~~~~VLdlG~G~G~~~~~~a~~~-~~~v~~~D~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~fD~I~ 152 (244)
..+.+|+|+|+|.|..|+.+|-.. ..+++.+|.+..-+ ..++.-+...+++ .+..+.-...+ ......++||+|+
T Consensus 69 ~~~~~ilDiGSGaGfPGi~laI~~p~~~v~Lves~~KK~-~FL~~v~~~L~L~-n~~i~~~R~E~~~~~~~~~~~~D~v~ 146 (239)
T d1xdza_ 69 NQVNTICDVGAGAGFPSLPIKICFPHLHVTIVDSLNKRI-TFLEKLSEALQLE-NTTFCHDRAETFGQRKDVRESYDIVT 146 (239)
T ss_dssp GGCCEEEEECSSSCTTHHHHHHHCTTCEEEEEESCHHHH-HHHHHHHHHHTCS-SEEEEESCHHHHTTCTTTTTCEEEEE
T ss_pred cCCCeEEeecCCCchHHHHHHHhCCCccceeecchHHHH-HHHHHHHHHhCCC-CcEEEeehhhhccccccccccceEEE
Confidence 356799999999999999998765 78899999998765 5555544444552 12222222211 1112245799999
Q ss_pred EcccccCCcChHHHHHHHHHHHHhcCCCCceEe
Q 026036 153 ASDILLYVKQYSNLIKSLSVLLKSYKPKDSQVG 185 (244)
Q Consensus 153 ~~~~l~~~~~~~~l~~~l~~~~~~lk~gG~~~~ 185 (244)
+-.+- .+...+.-..+.+++||++++
T Consensus 147 sRAva-------~l~~ll~~~~~~l~~~g~~i~ 172 (239)
T d1xdza_ 147 ARAVA-------RLSVLSELCLPLVKKNGLFVA 172 (239)
T ss_dssp EECCS-------CHHHHHHHHGGGEEEEEEEEE
T ss_pred Ehhhh-------CHHHHHHHHhhhcccCCEEEE
Confidence 95442 444888889999999997665
|
| >d2ih2a1 c.66.1.27 (A:21-243) DNA methylase TaqI, N-terminal domain {Thermus aquaticus [TaxId: 271]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: DNA methylase TaqI, N-terminal domain domain: DNA methylase TaqI, N-terminal domain species: Thermus aquaticus [TaxId: 271]
Probab=98.67 E-value=6.3e-09 Score=80.06 Aligned_cols=113 Identities=17% Similarity=0.159 Sum_probs=71.2
Q ss_pred HHHHHHhhccCcccCCeEEEeCCCCcHHHHHHHHhC--CCeEEEEeCChHHHHHHHHHhHHhcCCCCCcceEeeecCCCC
Q 026036 64 SFAEWLMHHREWIERRRCIELGSGTGALAIFLRKAM--NLDITTSDYNDQEIEDNIAYNSTTNGITPALPHIKHSWGDAF 141 (244)
Q Consensus 64 ~l~~~~~~~~~~~~~~~VLdlG~G~G~~~~~~a~~~--~~~v~~~D~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 141 (244)
.+++++.+.....++.+|||.|||+|.+...+.... ..+++|+|+++.++ ..++.+ ..+..+...
T Consensus 6 ~i~~~m~~l~~~~~~~~IlDp~~G~G~fl~~~~~~~~~~~~i~g~ei~~~~~-~~~~~~----------~~~~~~~~~-- 72 (223)
T d2ih2a1 6 EVVDFMVSLAEAPRGGRVLEPACAHGPFLRAFREAHGTAYRFVGVEIDPKAL-DLPPWA----------EGILADFLL-- 72 (223)
T ss_dssp HHHHHHHHHCCCCTTCEEEEETCTTCHHHHHHHHHHCSCSEEEEEESCTTTC-CCCTTE----------EEEESCGGG--
T ss_pred HHHHHHHHhcCCCCcCEEEECCCchHHHHHHHHHhccccceEEeeecCHHHH-hhcccc----------eeeeeehhc--
Confidence 356666666666788999999999999887776543 56799999998643 211111 111111111
Q ss_pred CCCCCCccEEEEcccccCCcC--------------------------hHHHHHHHHHHHHhcCCCCceEeeccc
Q 026036 142 PIPNPDWDLILASDILLYVKQ--------------------------YSNLIKSLSVLLKSYKPKDSQVGHLTK 189 (244)
Q Consensus 142 ~~~~~~fD~I~~~~~l~~~~~--------------------------~~~l~~~l~~~~~~lk~gG~~~~~~~~ 189 (244)
.....+||+|+++.++-.... ...-...+....+.|++||+++++++.
T Consensus 73 ~~~~~~fd~ii~npP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Fi~~al~~lk~~G~~~~I~p~ 146 (223)
T d2ih2a1 73 WEPGEAFDLILGNPPYGIVGEASKYPIHVFKAVKDLYKKAFSTWKGKYNLYGAFLEKAVRLLKPGGVLVFVVPA 146 (223)
T ss_dssp CCCSSCEEEEEECCCCCCBSCTTTCSBCCCHHHHHHHHHHCTTCCTTCCHHHHHHHHHHHHEEEEEEEEEEEEG
T ss_pred cccccccceecccCccccccccccccchhhhhhhhhhhhccccCCCcchHHHHHHHHHHHhcccCCceEEEEee
Confidence 122357999999887521100 001124567888999999998877443
|
| >d2okca1 c.66.1.45 (A:9-433) Type I restriction enzyme StySJI M protein {Bacteroides thetaiotaomicron [TaxId: 818]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: N-6 DNA Methylase-like domain: Type I restriction enzyme StySJI M protein species: Bacteroides thetaiotaomicron [TaxId: 818]
Probab=98.53 E-value=2.3e-07 Score=78.27 Aligned_cols=121 Identities=15% Similarity=0.111 Sum_probs=82.5
Q ss_pred HHHHHHhhccCcccCCeEEEeCCCCcHHHHHHHHhC--------------CCeEEEEeCChHHHHHHHHHhHHhcCCCCC
Q 026036 64 SFAEWLMHHREWIERRRCIELGSGTGALAIFLRKAM--------------NLDITTSDYNDQEIEDNIAYNSTTNGITPA 129 (244)
Q Consensus 64 ~l~~~~~~~~~~~~~~~VLdlG~G~G~~~~~~a~~~--------------~~~v~~~D~~~~~l~~~~~~~~~~~~~~~~ 129 (244)
.+++++.....+.++.+|+|-+||+|.+.+.+.+.. ...+.|.|+++.+. ..++.|....+....
T Consensus 149 ~Iv~~mv~ll~~~~~~~IlDPacGsG~fL~~a~~~~~~~~~~~~~~~~~~~~~l~g~E~~~~~~-~la~~n~~l~g~~~~ 227 (425)
T d2okca1 149 PLIQAMVDCINPQMGETVCDPACGTGGFLLTAYDYMKGQSASKEKRDFLRDKALHGVDNTPLVV-TLASMNLYLHGIGTD 227 (425)
T ss_dssp HHHHHHHHHHCCCTTCCEEETTCTTCHHHHHHHHHHHTCC-CCHHHHHHHHTTEEEEESCHHHH-HHHHHHHHHTTCCSS
T ss_pred hhhHhhheeccCcccceeeccccccCccHHHHHHHHHhhccchhhhhhhhhhhhhhhhccHHHH-HHHHhhhhhcCCccc
Confidence 355666665556678899999999999988776543 13499999999876 777778777666322
Q ss_pred cceEeeecCCCCC-CCCCCccEEEEcccccCCc---------------ChHHHHHHHHHHHHhcCCCCceEeecc
Q 026036 130 LPHIKHSWGDAFP-IPNPDWDLILASDILLYVK---------------QYSNLIKSLSVLLKSYKPKDSQVGHLT 188 (244)
Q Consensus 130 ~~~~~~~~~~~~~-~~~~~fD~I~~~~~l~~~~---------------~~~~l~~~l~~~~~~lk~gG~~~~~~~ 188 (244)
.. ....++.+. ....+||+|++++++ ... ....-...+..+.+.|++||+++++++
T Consensus 228 ~~--~i~~~d~l~~~~~~~fD~Ii~NPPf-g~~~~~~~~~~~~~~~~~~~~~~~~Fi~~~~~~Lk~~G~~~iI~p 299 (425)
T d2okca1 228 RS--PIVCEDSLEKEPSTLVDVILANPPF-GTRPAGSVDINRPDFYVETKNNQLNFLQHMMLMLKTGGRAAVVLP 299 (425)
T ss_dssp CC--SEEECCTTTSCCSSCEEEEEECCCS-SCCCTTCCCCCCTTSSSCCSCHHHHHHHHHHHHEEEEEEEEEEEE
T ss_pred cc--eeecCchhhhhcccccceEEecCCC-CCCccccchhhhhhcccccccHHHHHHHHHHHhcCCCCeEEEEec
Confidence 11 222333332 234589999999987 211 111123578889999999999888844
|
| >d2dula1 c.66.1.58 (A:3-377) N(2),N(2)-dimethylguanosine tRNA methyltransferase Trm1 {Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: TRM1-like domain: N(2),N(2)-dimethylguanosine tRNA methyltransferase Trm1 species: Pyrococcus horikoshii [TaxId: 53953]
Probab=98.51 E-value=9e-08 Score=79.16 Aligned_cols=103 Identities=16% Similarity=0.052 Sum_probs=72.5
Q ss_pred ccCCeEEEeCCCCcHHHHHHHHhC-CCeEEEEeCChHHHHHHHHHhHHhcCCCCCc-----------ceEeeecCCC---
Q 026036 76 IERRRCIELGSGTGALAIFLRKAM-NLDITTSDYNDQEIEDNIAYNSTTNGITPAL-----------PHIKHSWGDA--- 140 (244)
Q Consensus 76 ~~~~~VLdlG~G~G~~~~~~a~~~-~~~v~~~D~~~~~l~~~~~~~~~~~~~~~~~-----------~~~~~~~~~~--- 140 (244)
.++.+|||..||||..++..+... ..+|+++|+|+.++ +.+++|+..|+..... ..+.....|.
T Consensus 44 ~~~~~vLD~~sasG~rsiRya~E~~~~~V~~nDis~~A~-~~i~~N~~lN~~~~~~~~~~~~~~~~~~~~~~~~~Da~~~ 122 (375)
T d2dula1 44 LNPKIVLDALSATGIRGIRFALETPAEEVWLNDISEDAY-ELMKRNVMLNFDGELRESKGRAILKGEKTIVINHDDANRL 122 (375)
T ss_dssp HCCSEEEESSCTTSHHHHHHHHHSSCSEEEEEESCHHHH-HHHHHHHHHHCCSCCEECSSEEEEESSSEEEEEESCHHHH
T ss_pred hCCCEEEEcCCCccHHHHHHHHhCCCCEEEEecCCHHHH-HHHHHHHHhcCccccccccccccccccceeEeehhhhhhh
Confidence 367899999999999999776654 56899999999987 9999999999874311 0111111111
Q ss_pred CCCCCCCccEEEEcccccCCcChHHHHHHHHHHHHhcCCCCceEee
Q 026036 141 FPIPNPDWDLILASDILLYVKQYSNLIKSLSVLLKSYKPKDSQVGH 186 (244)
Q Consensus 141 ~~~~~~~fD~I~~~~~l~~~~~~~~l~~~l~~~~~~lk~gG~~~~~ 186 (244)
+......||+|.. |++ - ... ..+..+.+.++.||.+.++
T Consensus 123 ~~~~~~~fDvIDi-DPf-G--s~~---pfldsAi~a~~~~Gll~vT 161 (375)
T d2dula1 123 MAERHRYFHFIDL-DPF-G--SPM---EFLDTALRSAKRRGILGVT 161 (375)
T ss_dssp HHHSTTCEEEEEE-CCS-S--CCH---HHHHHHHHHEEEEEEEEEE
T ss_pred hHhhcCcCCcccC-CCC-C--CcH---HHHHHHHHHhccCCEEEEE
Confidence 1112357998876 664 2 222 6777788889999988887
|
| >d1qama_ c.66.1.24 (A:) rRNA adenine dimethylase {Bacillus subtilis, Ermc' [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: rRNA adenine dimethylase-like domain: rRNA adenine dimethylase species: Bacillus subtilis, Ermc' [TaxId: 1423]
Probab=98.47 E-value=6.2e-07 Score=69.37 Aligned_cols=86 Identities=13% Similarity=0.095 Sum_probs=59.1
Q ss_pred HHHHHHhhccCcccCCeEEEeCCCCcHHHHHHHHhCCCeEEEEeCChHHHHHHHHHhHHhcCCCCCcceEeeecCCCCCC
Q 026036 64 SFAEWLMHHREWIERRRCIELGSGTGALAIFLRKAMNLDITTSDYNDQEIEDNIAYNSTTNGITPALPHIKHSWGDAFPI 143 (244)
Q Consensus 64 ~l~~~~~~~~~~~~~~~VLdlG~G~G~~~~~~a~~~~~~v~~~D~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 143 (244)
.+.+.+.+.....++.+|||||||+|.++..++.. +.+|+++|+++.++ +.++.+.... ..+.+..+|.+..
T Consensus 8 ~i~~~iv~~~~~~~~d~VlEIGpG~G~LT~~Ll~~-~~~v~avE~D~~l~-~~l~~~~~~~------~n~~i~~~D~l~~ 79 (235)
T d1qama_ 8 HNIDKIMTNIRLNEHDNIFEIGSGKGHFTLELVQR-CNFVTAIEIDHKLC-KTTENKLVDH------DNFQVLNKDILQF 79 (235)
T ss_dssp HHHHHHHTTCCCCTTCEEEEECCTTSHHHHHHHHH-SSEEEEECSCHHHH-HHHHHHTTTC------CSEEEECCCGGGC
T ss_pred HHHHHHHHhcCCCCCCeEEEECCCchHHHHHHHhC-cCceEEEeeccchH-HHHHHHhhcc------cchhhhhhhhhhc
Confidence 34566666667779999999999999999999987 78999999999876 6666543221 1334445555443
Q ss_pred C--CCCccEEEEcccc
Q 026036 144 P--NPDWDLILASDIL 157 (244)
Q Consensus 144 ~--~~~fD~I~~~~~l 157 (244)
. ......|++|-+.
T Consensus 80 ~~~~~~~~~vv~NLPY 95 (235)
T d1qama_ 80 KFPKNQSYKIFGNIPY 95 (235)
T ss_dssp CCCSSCCCEEEEECCG
T ss_pred cccccccceeeeeehh
Confidence 2 2233456676553
|
| >d1uira_ c.66.1.17 (A:) Spermidine synthase {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Spermidine synthase domain: Spermidine synthase species: Thermus thermophilus [TaxId: 274]
Probab=98.44 E-value=6e-08 Score=78.41 Aligned_cols=109 Identities=12% Similarity=0.088 Sum_probs=68.6
Q ss_pred cCCeEEEeCCCCcHHHHHHHHhC-CCeEEEEeCChHHHHHHHHHhHHh-cCC---CCCcceEeeecCCCCCCCCCCccEE
Q 026036 77 ERRRCIELGSGTGALAIFLRKAM-NLDITTSDYNDQEIEDNIAYNSTT-NGI---TPALPHIKHSWGDAFPIPNPDWDLI 151 (244)
Q Consensus 77 ~~~~VLdlG~G~G~~~~~~a~~~-~~~v~~~D~~~~~l~~~~~~~~~~-~~~---~~~~~~~~~~~~~~~~~~~~~fD~I 151 (244)
..++||.||.|.|..+..+++.. ..+|+++|++++++ +.+++.... +.. ..++..+..|..+-+.....+||+|
T Consensus 77 ~pk~VLiiG~G~G~~~~~ll~~~~~~~v~~VEiD~~Vi-~~a~~~f~~~~~~~~~d~rv~i~~~Da~~~l~~~~~~yDvI 155 (312)
T d1uira_ 77 EPKRVLIVGGGEGATLREVLKHPTVEKAVMVDIDGELV-EVAKRHMPEWHQGAFDDPRAVLVIDDARAYLERTEERYDVV 155 (312)
T ss_dssp CCCEEEEEECTTSHHHHHHTTSTTCCEEEEEESCHHHH-HHHHHHCHHHHTTGGGCTTEEEEESCHHHHHHHCCCCEEEE
T ss_pred CcceEEEeCCCchHHHHHHHhcCCcceEEEecCCHHHH-HHHHhcCcccccCccCCCceEEEEchHHHHhhhcCCcccEE
Confidence 45699999999999998887654 56899999999976 777765422 111 1233333222222222235689999
Q ss_pred EE--cccccCCcChHHH--HHHHHHHHHhcCCCCceEee
Q 026036 152 LA--SDILLYVKQYSNL--IKSLSVLLKSYKPKDSQVGH 186 (244)
Q Consensus 152 ~~--~~~l~~~~~~~~l--~~~l~~~~~~lk~gG~~~~~ 186 (244)
++ .|+.........+ .+.++.+.+.|+|||.+++.
T Consensus 156 i~D~~dp~~~~~~~~~L~t~eF~~~~~~~L~p~Gvlv~~ 194 (312)
T d1uira_ 156 IIDLTDPVGEDNPARLLYTVEFYRLVKAHLNPGGVMGMQ 194 (312)
T ss_dssp EEECCCCBSTTCGGGGGSSHHHHHHHHHTEEEEEEEEEE
T ss_pred EEeCCCcccccchhhhhhhHHHHHHHHHhcCCCceEEEe
Confidence 95 2222111111112 37889999999999987764
|
| >d1zq9a1 c.66.1.24 (A:36-313) Probable dimethyladenosine transferase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: rRNA adenine dimethylase-like domain: Probable dimethyladenosine transferase species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.40 E-value=1.2e-06 Score=69.35 Aligned_cols=88 Identities=13% Similarity=0.220 Sum_probs=62.8
Q ss_pred HHHHHhhccCcccCCeEEEeCCCCcHHHHHHHHhCCCeEEEEeCChHHHHHHHHHhHHhcCCCCCcceEeeecCCCCCCC
Q 026036 65 FAEWLMHHREWIERRRCIELGSGTGALAIFLRKAMNLDITTSDYNDQEIEDNIAYNSTTNGITPALPHIKHSWGDAFPIP 144 (244)
Q Consensus 65 l~~~~~~~~~~~~~~~VLdlG~G~G~~~~~~a~~~~~~v~~~D~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 144 (244)
+++.+.+.....++..|||+|+|+|.++..+++. +.+|+++++++..+ +.+++........ ..+.+..+|.+...
T Consensus 9 i~~kIv~~~~~~~~d~VlEIGPG~G~LT~~Ll~~-~~~v~aiE~D~~l~-~~L~~~~~~~~~~---~~~~~i~~D~l~~~ 83 (278)
T d1zq9a1 9 IINSIIDKAALRPTDVVLEVGPGTGNMTVKLLEK-AKKVVACELDPRLV-AELHKRVQGTPVA---SKLQVLVGDVLKTD 83 (278)
T ss_dssp HHHHHHHHTCCCTTCEEEEECCTTSTTHHHHHHH-SSEEEEEESCHHHH-HHHHHHHTTSTTG---GGEEEEESCTTTSC
T ss_pred HHHHHHHHhCCCCCCEEEEECCCchHHHHHHHhc-CCcEEEEEEccchh-HHHHHHHhhhccc---cchhhhHHHHhhhh
Confidence 4455555566678899999999999999999987 67999999999876 6776655443322 23344444555554
Q ss_pred CCCccEEEEcccc
Q 026036 145 NPDWDLILASDIL 157 (244)
Q Consensus 145 ~~~fD~I~~~~~l 157 (244)
...++.||+|-+.
T Consensus 84 ~~~~~~vV~NLPY 96 (278)
T d1zq9a1 84 LPFFDTCVANLPY 96 (278)
T ss_dssp CCCCSEEEEECCG
T ss_pred hhhhhhhhcchHH
Confidence 4557788888775
|
| >d1mjfa_ c.66.1.17 (A:) Putative spermidine synthetase PF0127 (SpeE) {Archaeon Pyrococcus furiosus [TaxId: 2261]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Spermidine synthase domain: Putative spermidine synthetase PF0127 (SpeE) species: Archaeon Pyrococcus furiosus [TaxId: 2261]
Probab=98.38 E-value=1.2e-07 Score=75.42 Aligned_cols=107 Identities=15% Similarity=0.129 Sum_probs=68.1
Q ss_pred cCCeEEEeCCCCcHHHHHHHHhCCCeEEEEeCChHHHHHHHHHhHHhcCC------CCCcceEeeecCCCCCC--CCCCc
Q 026036 77 ERRRCIELGSGTGALAIFLRKAMNLDITTSDYNDQEIEDNIAYNSTTNGI------TPALPHIKHSWGDAFPI--PNPDW 148 (244)
Q Consensus 77 ~~~~VLdlG~G~G~~~~~~a~~~~~~v~~~D~~~~~l~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~--~~~~f 148 (244)
+.++||-||+|.|..+..+.+....+|+++|+++.++ +.+++....+.. ...-+.+.+..+|...+ ..++|
T Consensus 72 ~p~~vLiiG~G~G~~~~~~l~~~~~~v~~VEiD~~Vi-~~a~~~f~~~~~~~~~~~~~~d~rv~i~~~Da~~~l~~~~~y 150 (276)
T d1mjfa_ 72 KPKRVLVIGGGDGGTVREVLQHDVDEVIMVEIDEDVI-MVSKDLIKIDNGLLEAMLNGKHEKAKLTIGDGFEFIKNNRGF 150 (276)
T ss_dssp CCCEEEEEECTTSHHHHHHTTSCCSEEEEEESCHHHH-HHHHHHTCTTTTHHHHHHTTCCSSEEEEESCHHHHHHHCCCE
T ss_pred CCceEEEecCCchHHHHHHHHhCCceEEEecCCHHHH-HHHHHhhhhccchhhhhhccCCCCceEEEChHHHHHhccCCC
Confidence 4579999999999999887766567899999999876 777654322110 00112233333332211 24679
Q ss_pred cEEEEcccccCCcChH-HH--HHHHHHHHHhcCCCCceEee
Q 026036 149 DLILASDILLYVKQYS-NL--IKSLSVLLKSYKPKDSQVGH 186 (244)
Q Consensus 149 D~I~~~~~l~~~~~~~-~l--~~~l~~~~~~lk~gG~~~~~ 186 (244)
|+|++ |+. ...... .+ .+.++.+.+.|+|+|.+++.
T Consensus 151 DvIi~-D~~-~~~~~~~~L~t~eF~~~~~~~L~~~Gv~v~q 189 (276)
T d1mjfa_ 151 DVIIA-DST-DPVGPAKVLFSEEFYRYVYDALNNPGIYVTQ 189 (276)
T ss_dssp EEEEE-ECC-CCC-----TTSHHHHHHHHHHEEEEEEEEEE
T ss_pred CEEEE-eCC-CCCCCcccccCHHHHHhhHhhcCCCceEEEe
Confidence 99986 554 332221 11 37789999999999987764
|
| >d1ixka_ c.66.1.38 (A:) Hypothetical methyltransferase PH1374 {Archaeon Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: NOL1/NOP2/sun domain: Hypothetical methyltransferase PH1374 species: Archaeon Pyrococcus horikoshii [TaxId: 53953]
Probab=98.27 E-value=5.2e-06 Score=66.81 Aligned_cols=107 Identities=16% Similarity=0.148 Sum_probs=70.9
Q ss_pred CcccCCeEEEeCCCCcHHHHHHHHhC--CCeEEEEeCChHHHHHHHHHhHHhcCCCCCcceEeeecCCCC--CCCCCCcc
Q 026036 74 EWIERRRCIELGSGTGALAIFLRKAM--NLDITTSDYNDQEIEDNIAYNSTTNGITPALPHIKHSWGDAF--PIPNPDWD 149 (244)
Q Consensus 74 ~~~~~~~VLdlG~G~G~~~~~~a~~~--~~~v~~~D~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~fD 149 (244)
.+.+|.+|||++||.|.=+..++... ...+++.|.++.-+ ..++.|....+.. .+.....+.. +.....||
T Consensus 113 ~~~~g~~vlD~CAapGgKt~~l~~~~~~~~~i~a~d~~~~r~-~~l~~~~~r~~~~----~i~~~~~d~~~~~~~~~~fD 187 (313)
T d1ixka_ 113 DPKPGEIVADMAAAPGGKTSYLAQLMRNDGVIYAFDVDENRL-RETRLNLSRLGVL----NVILFHSSSLHIGELNVEFD 187 (313)
T ss_dssp CCCTTCEEEECCSSCSHHHHHHHHHTTTCSEEEEECSCHHHH-HHHHHHHHHHTCC----SEEEESSCGGGGGGGCCCEE
T ss_pred cCCccceeeecccchhhhhHhhhhhcccccceeeeccCHHHH-HHHHHHHHHHHhh----cccccccccccccccccccc
Confidence 45688999999999999888777665 56799999999876 6677777766663 2222233332 22346799
Q ss_pred EEEEcccccCC-------------cChH-------HHHHHHHHHHHhcCCCCceEee
Q 026036 150 LILASDILLYV-------------KQYS-------NLIKSLSVLLKSYKPKDSQVGH 186 (244)
Q Consensus 150 ~I~~~~~l~~~-------------~~~~-------~l~~~l~~~~~~lk~gG~~~~~ 186 (244)
.|++ |+-... .... -..+.+.+..+.+||||+++.+
T Consensus 188 ~ILv-DaPCSg~G~~~r~p~~~~~~~~~~~~~l~~~Q~~iL~~a~~~lk~gG~lVYs 243 (313)
T d1ixka_ 188 KILL-DAPCTGSGTIHKNPERKWNRTMDDIKFCQGLQMRLLEKGLEVLKPGGILVYS 243 (313)
T ss_dssp EEEE-ECCTTSTTTCC--------CCHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEE
T ss_pred EEEE-ccccccCCceeeccchhhhhhhhHHHHHHHHHHHHHHhhhheeCCCcEEEEe
Confidence 9987 211110 0111 1236678888999999987665
|
| >d1inla_ c.66.1.17 (A:) Spermidine synthase {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Spermidine synthase domain: Spermidine synthase species: Thermotoga maritima [TaxId: 2336]
Probab=98.26 E-value=3.3e-07 Score=73.15 Aligned_cols=107 Identities=10% Similarity=0.068 Sum_probs=68.0
Q ss_pred cCCeEEEeCCCCcHHHHHHHHhC-CCeEEEEeCChHHHHHHHHHhHHhcC--C-CCCcceEeeecCCCCCCCCCCccEEE
Q 026036 77 ERRRCIELGSGTGALAIFLRKAM-NLDITTSDYNDQEIEDNIAYNSTTNG--I-TPALPHIKHSWGDAFPIPNPDWDLIL 152 (244)
Q Consensus 77 ~~~~VLdlG~G~G~~~~~~a~~~-~~~v~~~D~~~~~l~~~~~~~~~~~~--~-~~~~~~~~~~~~~~~~~~~~~fD~I~ 152 (244)
..++||-||.|.|.....+++.. ..+|+++|+++.++ +.+++....+. . ..++..+..|..+-+.....+||+|+
T Consensus 89 ~pk~VLiiGgG~G~~~r~~l~~~~~~~i~~VEIDp~Vi-~~a~~~~~~~~~~~~d~rv~v~~~Da~~~l~~~~~~yDvIi 167 (295)
T d1inla_ 89 NPKKVLIIGGGDGGTLREVLKHDSVEKAILCEVDGLVI-EAARKYLKQTSCGFDDPRAEIVIANGAEYVRKFKNEFDVII 167 (295)
T ss_dssp SCCEEEEEECTTCHHHHHHTTSTTCSEEEEEESCHHHH-HHHHHHCHHHHGGGGCTTEEEEESCHHHHGGGCSSCEEEEE
T ss_pred CCceEEEecCCchHHHHHHHhcCCCceEEEecCCHHHH-HHHHHHHHhhcccccCCCcEEEhhhHHHHHhcCCCCCCEEE
Confidence 34699999999999998887654 46899999999976 77776543321 1 12333332222222333456899999
Q ss_pred EcccccCCcChH--HH--HHHHHHHHHhcCCCCceEee
Q 026036 153 ASDILLYVKQYS--NL--IKSLSVLLKSYKPKDSQVGH 186 (244)
Q Consensus 153 ~~~~l~~~~~~~--~l--~~~l~~~~~~lk~gG~~~~~ 186 (244)
+ |+. .....+ .+ ...++.+.+.|+|||.++..
T Consensus 168 ~-D~~-dp~~~~~~~L~t~efy~~~~~~L~~~Gi~v~q 203 (295)
T d1inla_ 168 I-DST-DPTAGQGGHLFTEEFYQACYDALKEDGVFSAE 203 (295)
T ss_dssp E-EC-----------CCSHHHHHHHHHHEEEEEEEEEE
T ss_pred E-cCC-CCCcCchhhhccHHHHHHHHhhcCCCcEEEEe
Confidence 6 443 221111 11 37889999999999987765
|
| >d1yuba_ c.66.1.24 (A:) rRNA adenine dimethylase {Streptococcus pneumoniae, Ermam [TaxId: 1313]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: rRNA adenine dimethylase-like domain: rRNA adenine dimethylase species: Streptococcus pneumoniae, Ermam [TaxId: 1313]
Probab=98.20 E-value=2.2e-07 Score=72.43 Aligned_cols=95 Identities=15% Similarity=0.167 Sum_probs=60.2
Q ss_pred HHHHhhccCcccCCeEEEeCCCCcHHHHHHHHhCCCeEEEEeCChHHHHHHHHHhHHhcCCCCCcceEeeecCCCCC--C
Q 026036 66 AEWLMHHREWIERRRCIELGSGTGALAIFLRKAMNLDITTSDYNDQEIEDNIAYNSTTNGITPALPHIKHSWGDAFP--I 143 (244)
Q Consensus 66 ~~~~~~~~~~~~~~~VLdlG~G~G~~~~~~a~~~~~~v~~~D~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~ 143 (244)
.+.+.+.....++.+|||||||+|.++..+++. +.+|+++|+++.++ +.++.+... ...+.+..+|.+. .
T Consensus 18 i~kIv~~~~~~~~d~VLEIGpG~G~LT~~L~~~-~~~v~aIE~D~~l~-~~l~~~~~~------~~n~~ii~~D~l~~~~ 89 (245)
T d1yuba_ 18 LNQIIKQLNLKETDTVYEIGTGKGHLTTKLAKI-SKQVTSIELDSHLF-NLSSEKLKL------NTRVTLIHQDILQFQF 89 (245)
T ss_dssp HHHHHHHCCCCSSEEEEECSCCCSSCSHHHHHH-SSEEEESSSSCSSS-SSSSCTTTT------CSEEEECCSCCTTTTC
T ss_pred HHHHHHhcCCCCCCeEEEECCCccHHHHHHHhh-cCceeEeeecccch-hhhhhhhhh------ccchhhhhhhhhcccc
Confidence 344445556668889999999999999999887 78999999999865 433322211 1234444555443 3
Q ss_pred CCCCccEEEEcccccCCcChHHHHHHH
Q 026036 144 PNPDWDLILASDILLYVKQYSNLIKSL 170 (244)
Q Consensus 144 ~~~~fD~I~~~~~l~~~~~~~~l~~~l 170 (244)
....++.|+++-+. +. +.+-+.+.+
T Consensus 90 ~~~~~~~vv~NLPY-~I-st~il~~~l 114 (245)
T d1yuba_ 90 PNKQRYKIVGNIPY-HL-STQIIKKVV 114 (245)
T ss_dssp CCSSEEEEEEECCS-SS-CHHHHHHHH
T ss_pred ccceeeeEeeeeeh-hh-hHHHHHHHh
Confidence 33456677777663 43 334344443
|
| >d2ar0a1 c.66.1.45 (A:6-529) M.EcoKI {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: N-6 DNA Methylase-like domain: M.EcoKI species: Escherichia coli [TaxId: 562]
Probab=98.14 E-value=3.7e-06 Score=72.53 Aligned_cols=124 Identities=10% Similarity=0.062 Sum_probs=80.5
Q ss_pred HHHHHHhhccCcccCCeEEEeCCCCcHHHHHHHHhC-------------------CCeEEEEeCChHHHHHHHHHhHHhc
Q 026036 64 SFAEWLMHHREWIERRRCIELGSGTGALAIFLRKAM-------------------NLDITTSDYNDQEIEDNIAYNSTTN 124 (244)
Q Consensus 64 ~l~~~~~~~~~~~~~~~VLdlG~G~G~~~~~~a~~~-------------------~~~v~~~D~~~~~l~~~~~~~~~~~ 124 (244)
.+++++.......++.+|+|-+||+|.+.+.+.+.. ...++|.|+++.+. ..++-|+...
T Consensus 151 ~Iv~~mv~ll~~~~~~~i~DPacGsG~fL~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~G~E~~~~~~-~la~~nl~l~ 229 (524)
T d2ar0a1 151 PLIKTIIHLLKPQPREVVQDPAAGTAGFLIEADRYVKSQTNDLDDLDGDTQDFQIHRAFIGLELVPGTR-RLALMNCLLH 229 (524)
T ss_dssp HHHHHHHHHHCCCTTCCEEETTCTTTHHHHHHHHHHHTTTTTTTTSCHHHHHHHHHTSEEEEESCHHHH-HHHHHHHHTT
T ss_pred chhHhhhhcccCccchhhcchhhhcchhhHHHHHHHHHhcCcccccchhHHHHHHHhhhhhhccCHHHH-HHHHHHHHhh
Confidence 455666666666678899999999999987765432 12589999999876 7777777766
Q ss_pred CCCCCcce-EeeecCCCCC---CCCCCccEEEEcccccCCc-----------ChHHHHHHHHHHHHhcCCCCceEeecc
Q 026036 125 GITPALPH-IKHSWGDAFP---IPNPDWDLILASDILLYVK-----------QYSNLIKSLSVLLKSYKPKDSQVGHLT 188 (244)
Q Consensus 125 ~~~~~~~~-~~~~~~~~~~---~~~~~fD~I~~~~~l~~~~-----------~~~~l~~~l~~~~~~lk~gG~~~~~~~ 188 (244)
+....+.. -....++.+. ....+||+|++|+++-... ....-...++.+.+.|++||+++++++
T Consensus 230 ~~~~~i~~~~~~~~~~~l~~d~~~~~kfD~Ii~NPPfg~~~~~~~~~~~~~~~~~~~~~Fi~~~l~~Lk~gGr~aiIlP 308 (524)
T d2ar0a1 230 DIEGNLDHGGAIRLGNTLGSDGENLPKAHIVATNPPFGSAAGTNITRTFVHPTSNKQLCFMQHIIETLHPGGRAAVVVP 308 (524)
T ss_dssp TCCCBGGGTBSEEESCTTSHHHHTSCCEEEEEECCCCTTCSSCCCCSCCSSCCSCHHHHHHHHHHHHEEEEEEEEEEEE
T ss_pred cccccccccchhhhhhhhhhcccccccceeEEecCCccccccccchhhhccccccccHHHHHHHHHhccccCcEEEEEe
Confidence 65322110 0111222221 1235799999999872110 011122578899999999999988844
|
| >d1iy9a_ c.66.1.17 (A:) Spermidine synthase {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Spermidine synthase domain: Spermidine synthase species: Bacillus subtilis [TaxId: 1423]
Probab=98.14 E-value=1.7e-06 Score=68.39 Aligned_cols=107 Identities=16% Similarity=0.122 Sum_probs=69.0
Q ss_pred cCCeEEEeCCCCcHHHHHHHHhC-CCeEEEEeCChHHHHHHHHHhHHhcCCCCCcceEeeecCCCC---CCCCCCccEEE
Q 026036 77 ERRRCIELGSGTGALAIFLRKAM-NLDITTSDYNDQEIEDNIAYNSTTNGITPALPHIKHSWGDAF---PIPNPDWDLIL 152 (244)
Q Consensus 77 ~~~~VLdlG~G~G~~~~~~a~~~-~~~v~~~D~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~fD~I~ 152 (244)
..++||-||.|.|..+..+.+.. ..+|+++|++++++ +.+++....+.-...-+.+.+..+|.. .....+||+|+
T Consensus 75 ~p~~vLiiGgG~G~~~~~~l~~~~~~~i~~VEID~~Vi-~~a~~~~~~~~~~~~d~r~~i~~~D~~~~l~~~~~~yDvIi 153 (274)
T d1iy9a_ 75 NPEHVLVVGGGDGGVIREILKHPSVKKATLVDIDGKVI-EYSKKFLPSIAGKLDDPRVDVQVDDGFMHIAKSENQYDVIM 153 (274)
T ss_dssp SCCEEEEESCTTCHHHHHHTTCTTCSEEEEEESCHHHH-HHHHHHCHHHHTTTTSTTEEEEESCSHHHHHTCCSCEEEEE
T ss_pred CcceEEecCCCCcHHHHHHHhcCCcceEEEecCCHHHH-HHHHHhChhhcccccCCCeEEEechHHHHHhhcCCCCCEEE
Confidence 44799999999999998887654 56899999999976 777765432211111122333333432 23356899998
Q ss_pred EcccccCCcChH-H--HHHHHHHHHHhcCCCCceEee
Q 026036 153 ASDILLYVKQYS-N--LIKSLSVLLKSYKPKDSQVGH 186 (244)
Q Consensus 153 ~~~~l~~~~~~~-~--l~~~l~~~~~~lk~gG~~~~~ 186 (244)
. |.. .....+ . -...++.+.+.|+|+|.++..
T Consensus 154 ~-D~~-~p~~~~~~L~t~eFy~~~~~~L~~~Gv~v~q 188 (274)
T d1iy9a_ 154 V-DST-EPVGPAVNLFTKGFYAGIAKALKEDGIFVAQ 188 (274)
T ss_dssp E-SCS-SCCSCCCCCSTTHHHHHHHHHEEEEEEEEEE
T ss_pred E-cCC-CCCCcchhhccHHHHHHHHhhcCCCceEEEe
Confidence 7 332 211110 0 127788899999999987765
|
| >d2b2ca1 c.66.1.17 (A:3-314) Spermidine synthase {Caenorhabditis elegans [TaxId: 6239]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Spermidine synthase domain: Spermidine synthase species: Caenorhabditis elegans [TaxId: 6239]
Probab=98.11 E-value=1.4e-06 Score=69.78 Aligned_cols=107 Identities=17% Similarity=0.189 Sum_probs=67.3
Q ss_pred cCCeEEEeCCCCcHHHHHHHHhC-CCeEEEEeCChHHHHHHHHHhHHhcCCCCCcceEeeecCCCCC---CCCCCccEEE
Q 026036 77 ERRRCIELGSGTGALAIFLRKAM-NLDITTSDYNDQEIEDNIAYNSTTNGITPALPHIKHSWGDAFP---IPNPDWDLIL 152 (244)
Q Consensus 77 ~~~~VLdlG~G~G~~~~~~a~~~-~~~v~~~D~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~fD~I~ 152 (244)
..++||-||.|.|.....+.+.. ..+|+++|++++++ +.+++....+.....-+.+.+..+|... ....+||+|+
T Consensus 106 ~pk~VLIiGgG~G~~~rellk~~~v~~v~~VEID~~Vv-~~a~~~~~~~~~~~~dprv~i~i~Da~~~l~~~~~~yDvII 184 (312)
T d2b2ca1 106 DPKRVLIIGGGDGGILREVLKHESVEKVTMCEIDEMVI-DVAKKFLPGMSCGFSHPKLDLFCGDGFEFLKNHKNEFDVII 184 (312)
T ss_dssp SCCEEEEESCTTSHHHHHHTTCTTCCEEEEECSCHHHH-HHHHHHCTTTSGGGGCTTEEEECSCHHHHHHHCTTCEEEEE
T ss_pred CCCeEEEeCCCchHHHHHHHHcCCcceEEEEcccHHHH-HHHHhhchhhccccCCCCeEEEEchHHHHHHhCCCCCCEEE
Confidence 34699999999999998887654 36899999999976 7777654332111111233343444322 2356899999
Q ss_pred EcccccCCcChH-HH--HHHHHHHHHhcCCCCceEee
Q 026036 153 ASDILLYVKQYS-NL--IKSLSVLLKSYKPKDSQVGH 186 (244)
Q Consensus 153 ~~~~l~~~~~~~-~l--~~~l~~~~~~lk~gG~~~~~ 186 (244)
+ |+. ...... .+ ...++.+.+.|+|||.++..
T Consensus 185 ~-D~~-dp~~~~~~L~t~eFy~~~~~~L~~~Gi~v~q 219 (312)
T d2b2ca1 185 T-DSS-DPVGPAESLFGQSYYELLRDALKEDGILSSQ 219 (312)
T ss_dssp E-CCC--------------HHHHHHHHEEEEEEEEEE
T ss_pred E-cCC-CCCCcchhhhhHHHHHHHHhhcCCCcEEEEe
Confidence 7 443 221111 11 26688899999999987765
|
| >d2o07a1 c.66.1.17 (A:16-300) Spermidine synthase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Spermidine synthase domain: Spermidine synthase species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.10 E-value=1.3e-06 Score=69.42 Aligned_cols=107 Identities=11% Similarity=0.068 Sum_probs=67.2
Q ss_pred cCCeEEEeCCCCcHHHHHHHHhC-CCeEEEEeCChHHHHHHHHHhHHhcC--C-CCCcceEeeecCCCCCCCCCCccEEE
Q 026036 77 ERRRCIELGSGTGALAIFLRKAM-NLDITTSDYNDQEIEDNIAYNSTTNG--I-TPALPHIKHSWGDAFPIPNPDWDLIL 152 (244)
Q Consensus 77 ~~~~VLdlG~G~G~~~~~~a~~~-~~~v~~~D~~~~~l~~~~~~~~~~~~--~-~~~~~~~~~~~~~~~~~~~~~fD~I~ 152 (244)
..++||-||.|.|..+..+.+.. ..+|+++|++++++ +.+++....+. . ..++..+..|...-+....++||+|+
T Consensus 78 ~pk~vLiiGgG~G~~~~~~l~~~~~~~v~~vEiD~~Vv-~~a~~~~~~~~~~~~d~rv~i~~~Da~~~l~~~~~~yDvIi 156 (285)
T d2o07a1 78 NPRKVLIIGGGDGGVLREVVKHPSVESVVQCEIDEDVI-QVSKKFLPGMAIGYSSSKLTLHVGDGFEFMKQNQDAFDVII 156 (285)
T ss_dssp SCCEEEEEECTTSHHHHHHTTCTTCCEEEEEESCHHHH-HHHHHHCHHHHGGGGCTTEEEEESCHHHHHHTCSSCEEEEE
T ss_pred CcCeEEEeCCCchHHHHHHHHcCCcceeeeccCCHHHH-HHHHhhchhhccccCCCCceEEEccHHHHHhcCCCCCCEEE
Confidence 44699999999999998887654 67899999999976 77766433211 1 12333332221111222346899999
Q ss_pred EcccccCCcChH-HH--HHHHHHHHHhcCCCCceEee
Q 026036 153 ASDILLYVKQYS-NL--IKSLSVLLKSYKPKDSQVGH 186 (244)
Q Consensus 153 ~~~~l~~~~~~~-~l--~~~l~~~~~~lk~gG~~~~~ 186 (244)
+ |.. ...... .+ ...++.+.+.|+|||.+++.
T Consensus 157 ~-D~~-~p~~~~~~L~t~eF~~~~~~~L~~~Gi~v~q 191 (285)
T d2o07a1 157 T-DSS-DPMGPAESLFKESYYQLMKTALKEDGVLCCQ 191 (285)
T ss_dssp E-ECC------------CHHHHHHHHHEEEEEEEEEE
T ss_pred E-cCC-CCCCcccccccHHHHHHHHHhcCCCCeEEEe
Confidence 7 543 322211 11 15688999999999987765
|
| >d1sqga2 c.66.1.38 (A:145-428) Ribosomal RNA small subunit methyltransferase B, RsmB (Sun, Fmu/Fmv), C-terminal domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: NOL1/NOP2/sun domain: Ribosomal RNA small subunit methyltransferase B, RsmB (Sun, Fmu/Fmv), C-terminal domain species: Escherichia coli [TaxId: 562]
Probab=98.07 E-value=3.7e-06 Score=66.82 Aligned_cols=108 Identities=12% Similarity=0.184 Sum_probs=71.3
Q ss_pred CcccCCeEEEeCCCCcHHHHHHHHhC-CCeEEEEeCChHHHHHHHHHhHHhcCCCCCcceEeeecCCCCC---CCCCCcc
Q 026036 74 EWIERRRCIELGSGTGALAIFLRKAM-NLDITTSDYNDQEIEDNIAYNSTTNGITPALPHIKHSWGDAFP---IPNPDWD 149 (244)
Q Consensus 74 ~~~~~~~VLdlG~G~G~~~~~~a~~~-~~~v~~~D~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~fD 149 (244)
...+|.+|||++||.|.=+..++..+ ..+|+++|+++.-+ ..++.++...+.+. +.....+... ...+.||
T Consensus 99 ~~~~g~~vLD~CAaPGgKt~~la~l~~~~~i~a~d~~~~R~-~~l~~~~~r~g~~~----~~~~~~~~~~~~~~~~~~fd 173 (284)
T d1sqga2 99 APQNGEHILDLCAAPGGKTTHILEVAPEAQVVAVDIDEQRL-SRVYDNLKRLGMKA----TVKQGDGRYPSQWCGEQQFD 173 (284)
T ss_dssp CCCTTCEEEEESCTTCHHHHHHHHHCTTCEEEEEESSTTTH-HHHHHHHHHTTCCC----EEEECCTTCTHHHHTTCCEE
T ss_pred CccccceeEeccCccccchhhhhhhhhhhhhhhhhcchhhh-hhHhhhhhcccccc----eeeeccccccchhccccccc
Confidence 44578999999999999998888765 56899999999876 67777777777632 2222212111 1245799
Q ss_pred EEEEcc------cccCC---------cChHH----HHHHHHHHHHhcCCCCceEee
Q 026036 150 LILASD------ILLYV---------KQYSN----LIKSLSVLLKSYKPKDSQVGH 186 (244)
Q Consensus 150 ~I~~~~------~l~~~---------~~~~~----l~~~l~~~~~~lk~gG~~~~~ 186 (244)
.|++=. ++-.+ ..... ..+.|.++.+.+||||+++.+
T Consensus 174 ~IL~DaPCSg~G~~rr~p~~~~~~~~~~~~~l~~lQ~~iL~~a~~~lk~gG~lvYs 229 (284)
T d1sqga2 174 RILLDAPCSATGVIRRHPDIKWLRRDRDIPELAQLQSEILDAIWPHLKTGGTLVYA 229 (284)
T ss_dssp EEEEECCCCCGGGTTTCTTHHHHCCTTHHHHHHHHHHHHHHHHGGGEEEEEEEEEE
T ss_pred EEEEeccccccCccccccchhhccccchhhHHHHHHHHHHHHHHHhcCCCceEEEe
Confidence 999811 11111 11111 236678888899999987766
|
| >d1xj5a_ c.66.1.17 (A:) Spermidine synthase {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Spermidine synthase domain: Spermidine synthase species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]
Probab=98.06 E-value=3e-06 Score=67.46 Aligned_cols=107 Identities=12% Similarity=0.179 Sum_probs=68.7
Q ss_pred cCCeEEEeCCCCcHHHHHHHHhCC-CeEEEEeCChHHHHHHHHHhHHhcCCCCCcceEeeecCCC---C-CCCCCCccEE
Q 026036 77 ERRRCIELGSGTGALAIFLRKAMN-LDITTSDYNDQEIEDNIAYNSTTNGITPALPHIKHSWGDA---F-PIPNPDWDLI 151 (244)
Q Consensus 77 ~~~~VLdlG~G~G~~~~~~a~~~~-~~v~~~D~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~---~-~~~~~~fD~I 151 (244)
..++||=||.|.|.....+.+... .+|+++|++++++ +.+++....+.....-+.+.+..+|. + ....++||+|
T Consensus 80 ~pk~VLiiGgG~G~~~r~~l~~~~~~~i~~VEiD~~Vi-~~~~~~f~~~~~~~~~~r~~i~~~Da~~~l~~~~~~~yDvI 158 (290)
T d1xj5a_ 80 NPKKVLVIGGGDGGVLREVARHASIEQIDMCEIDKMVV-DVSKQFFPDVAIGYEDPRVNLVIGDGVAFLKNAAEGSYDAV 158 (290)
T ss_dssp CCCEEEEETCSSSHHHHHHTTCTTCCEEEEEESCHHHH-HHHHHHCHHHHGGGGSTTEEEEESCHHHHHHTSCTTCEEEE
T ss_pred CCcceEEecCCchHHHHHHHhcccceeeEEecCCHHHH-HHHHHhchhhhccccCCCcEEEEccHHHHHhhccccCccEE
Confidence 446999999999999998876543 6899999999976 77776432211100111223333332 2 1234589999
Q ss_pred EEcccccCCcChH-HH--HHHHHHHHHhcCCCCceEee
Q 026036 152 LASDILLYVKQYS-NL--IKSLSVLLKSYKPKDSQVGH 186 (244)
Q Consensus 152 ~~~~~l~~~~~~~-~l--~~~l~~~~~~lk~gG~~~~~ 186 (244)
+. |+. ...... .+ ...++.+.+.|+|||.++..
T Consensus 159 i~-D~~-dp~~~~~~L~t~eF~~~~~~~L~~~Gi~v~q 194 (290)
T d1xj5a_ 159 IV-DSS-DPIGPAKELFEKPFFQSVARALRPGGVVCTQ 194 (290)
T ss_dssp EE-CCC-CTTSGGGGGGSHHHHHHHHHHEEEEEEEEEE
T ss_pred EE-cCC-CCCCcchhhCCHHHHHHHHHhcCCCcEEEEe
Confidence 97 544 322111 11 26789999999999987775
|
| >d1qyra_ c.66.1.24 (A:) High level kasugamycin resistance protein KsgA {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: rRNA adenine dimethylase-like domain: High level kasugamycin resistance protein KsgA species: Escherichia coli [TaxId: 562]
Probab=97.86 E-value=9.5e-06 Score=63.12 Aligned_cols=53 Identities=11% Similarity=0.116 Sum_probs=42.0
Q ss_pred HHHHHhhccCcccCCeEEEeCCCCcHHHHHHHHhCCCeEEEEeCChHHHHHHHHH
Q 026036 65 FAEWLMHHREWIERRRCIELGSGTGALAIFLRKAMNLDITTSDYNDQEIEDNIAY 119 (244)
Q Consensus 65 l~~~~~~~~~~~~~~~VLdlG~G~G~~~~~~a~~~~~~v~~~D~~~~~l~~~~~~ 119 (244)
+.+.+.+.....++..|||||||+|.++..+++. +.+|+++|+++.++ +.++.
T Consensus 9 ~~~~Iv~~~~~~~~d~vlEIGpG~G~LT~~Ll~~-~~~v~aiEiD~~l~-~~L~~ 61 (252)
T d1qyra_ 9 VIDSIVSAINPQKGQAMVEIGPGLAALTEPVGER-LDQLTVIELDRDLA-ARLQT 61 (252)
T ss_dssp HHHHHHHHHCCCTTCCEEEECCTTTTTHHHHHTT-CSCEEEECCCHHHH-HHHHT
T ss_pred HHHHHHHhcCCCCCCEEEEECCCchHHHHHHHcc-CCceEEEEeccchh-HHHHH
Confidence 3444455555667899999999999999999876 78899999999875 66654
|
| >d2b9ea1 c.66.1.38 (A:133-425) NOL1R {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: NOL1/NOP2/sun domain: NOL1R species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.82 E-value=0.00011 Score=58.25 Aligned_cols=79 Identities=13% Similarity=0.107 Sum_probs=53.5
Q ss_pred CcccCCeEEEeCCCCcHHHHHHHHhC--CCeEEEEeCChHHHHHHHHHhHHhcCCCCCcceEeeecCCCCCC--CCCCcc
Q 026036 74 EWIERRRCIELGSGTGALAIFLRKAM--NLDITTSDYNDQEIEDNIAYNSTTNGITPALPHIKHSWGDAFPI--PNPDWD 149 (244)
Q Consensus 74 ~~~~~~~VLdlG~G~G~~~~~~a~~~--~~~v~~~D~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~fD 149 (244)
...+|.+|||++||.|.=+..++... ..+|+++|+++.-+ ..++.|+...++.. +.....+.....+. ..++||
T Consensus 91 ~~~~g~~vLD~cAapGgKt~~la~l~~~~~~i~a~d~~~~R~-~~l~~~l~r~g~~~-~~~~~~d~~~~~~~~~~~~~fD 168 (293)
T d2b9ea1 91 DPPPGSHVIDACAAPGNKTSHLAALLKNQGKIFAFDLDAKRL-ASMATLLARAGVSC-CELAEEDFLAVSPSDPRYHEVH 168 (293)
T ss_dssp CCCTTCEEEESSCTTCHHHHHHHHHHTTCSEEEEEESCHHHH-HHHHHHHHHTTCCS-EEEEECCGGGSCTTCGGGTTEE
T ss_pred CCCccceEEecccchhhHHHHHHHHhcCCceEeeecCCHHHH-HHHHHHHHhcCccc-eeeeehhhhhhcccccccceee
Confidence 34578999999999999888777653 67899999999876 77888888877732 22222221111111 124799
Q ss_pred EEEEc
Q 026036 150 LILAS 154 (244)
Q Consensus 150 ~I~~~ 154 (244)
.|+.-
T Consensus 169 ~VL~D 173 (293)
T d2b9ea1 169 YILLD 173 (293)
T ss_dssp EEEEC
T ss_pred EEeec
Confidence 99883
|
| >d1wg8a2 c.66.1.23 (A:5-108,A:207-284) TM0872, methyltransferase domain {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: MraW-like putative methyltransferases domain: TM0872, methyltransferase domain species: Thermus thermophilus [TaxId: 274]
Probab=97.79 E-value=3.6e-05 Score=56.70 Aligned_cols=108 Identities=12% Similarity=0.016 Sum_probs=69.9
Q ss_pred hccCcccCCeEEEeCCCCcHHHHHHHHhCCCeEEEEeCChHHHHHHHHHhHHhcCCCCCcceEeeecCCC---C-CCCCC
Q 026036 71 HHREWIERRRCIELGSGTGALAIFLRKAMNLDITTSDYNDQEIEDNIAYNSTTNGITPALPHIKHSWGDA---F-PIPNP 146 (244)
Q Consensus 71 ~~~~~~~~~~VLdlG~G~G~~~~~~a~~~~~~v~~~D~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~---~-~~~~~ 146 (244)
+...+.+|..++|..+|.|..+..+... ..+|+|+|.+++++ ..++... ..++..+.....+. + ....+
T Consensus 12 ~~l~~~~g~~~vD~T~G~GGhs~~iL~~-~~~viaiD~D~~ai-~~a~~~~-----~~~~~~~~~~f~~~~~~l~~~~~~ 84 (182)
T d1wg8a2 12 DLLAVRPGGVYVDATLGGAGHARGILER-GGRVIGLDQDPEAV-ARAKGLH-----LPGLTVVQGNFRHLKRHLAALGVE 84 (182)
T ss_dssp HHHTCCTTCEEEETTCTTSHHHHHHHHT-TCEEEEEESCHHHH-HHHHHTC-----CTTEEEEESCGGGHHHHHHHTTCS
T ss_pred HhcCCCCCCEEEEeCCCCcHHHHHHhcc-cCcEEEEhhhhhHH-HHHhhcc-----ccceeEeehHHHHHHHHHHHcCCC
Confidence 3345668899999999999999988876 67999999999987 5555421 12223332222111 0 12235
Q ss_pred CccEEEEcccccCC-------cChHHHHHHHHHHHHhcCCCCceEee
Q 026036 147 DWDLILASDILLYV-------KQYSNLIKSLSVLLKSYKPKDSQVGH 186 (244)
Q Consensus 147 ~fD~I~~~~~l~~~-------~~~~~l~~~l~~~~~~lk~gG~~~~~ 186 (244)
.+|.|+.---+ .. .....+...|......++|||++++.
T Consensus 85 ~vdgIl~DLGv-Ss~qld~~~re~~~~~~~L~~~~~~lk~gg~~~ii 130 (182)
T d1wg8a2 85 RVDGILADLGV-SSFHLDDPSDELNALKEFLEQAAEVLAPGGRLVVI 130 (182)
T ss_dssp CEEEEEEECSC-CHHHHHCGGTHHHHHHHHHHHHHHHEEEEEEEEEE
T ss_pred ccCEEEEEccC-CHHHhhcchHHHHHHHHHHHHHHhhhCCCCeEEEE
Confidence 78988873222 10 11234456788888999999998876
|
| >d2p41a1 c.66.1.25 (A:8-264) An RNA cap (nucleoside-2'-O-)-methyltransferase domain of RNA polymerase NS5 {Dengue virus 2 [TaxId: 11060]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: mRNA cap methylase domain: An RNA cap (nucleoside-2'-O-)-methyltransferase domain of RNA polymerase NS5 species: Dengue virus 2 [TaxId: 11060]
Probab=97.78 E-value=0.00014 Score=55.64 Aligned_cols=124 Identities=11% Similarity=0.087 Sum_probs=72.7
Q ss_pred cceeechHHHHHHHHhhccCcccCCeEEEeCCCCcHHHHHHHHhC-CCeEEEEeCChHHHHHHHHHhHHhcCCCCCcceE
Q 026036 55 ANFLWPGTFSFAEWLMHHREWIERRRCIELGSGTGALAIFLRKAM-NLDITTSDYNDQEIEDNIAYNSTTNGITPALPHI 133 (244)
Q Consensus 55 ~~~~w~~~~~l~~~~~~~~~~~~~~~VLdlG~G~G~~~~~~a~~~-~~~v~~~D~~~~~l~~~~~~~~~~~~~~~~~~~~ 133 (244)
+..+..++..|.+..... ...++.+|+|||||.|..+..++.+. ...|.|+++--. ..+ ......+.....+
T Consensus 45 ~~~~SR~~~Kl~~~~~~~-~~~~~~~vvDlG~~pGgws~~~a~~~~v~~V~g~~iG~d-~~e-----~P~~~~~~~~ni~ 117 (257)
T d2p41a1 45 HHAVSRGSAKLRWFVERN-LVTPEGKVVDLGCGRGGWSYYCGGLKNVREVKGLTKGGP-GHE-----EPIPMSTYGWNLV 117 (257)
T ss_dssp SCCSSTHHHHHHHHHHTT-SSCCCEEEEEETCTTSHHHHHHHTSTTEEEEEEECCCST-TSC-----CCCCCCSTTGGGE
T ss_pred CCCcchHHHHHHHHHHhc-CccCCCeEEEecCCCChHHHHHHhhcCCCceeEEEecCc-ccc-----CCccccccccccc
Confidence 445566888887766554 55677799999999999999998764 356888887422 100 0000000111223
Q ss_pred eeecCCCC-CCCCCCccEEEEcccccCCcC----hHHHHHHHHHHHHhcCCCCceEee
Q 026036 134 KHSWGDAF-PIPNPDWDLILASDILLYVKQ----YSNLIKSLSVLLKSYKPKDSQVGH 186 (244)
Q Consensus 134 ~~~~~~~~-~~~~~~fD~I~~~~~l~~~~~----~~~l~~~l~~~~~~lk~gG~~~~~ 186 (244)
.+...+.. .......|+|+| |+--.... ...-.+.++-+.+.|+|||.|++-
T Consensus 118 ~~~~~~dv~~l~~~~~D~vlc-Dm~ess~~~~vd~~Rtl~vLela~~wLk~gg~FvvK 174 (257)
T d2p41a1 118 RLQSGVDVFFIPPERCDTLLC-DIGESSPNPTVEAGRTLRVLNLVENWLSNNTQFCVK 174 (257)
T ss_dssp EEECSCCTTTSCCCCCSEEEE-CCCCCCSSHHHHHHHHHHHHHHHHHHCCTTCEEEEE
T ss_pred cchhhhhHHhcCCCcCCEEEe-eCCCCCCCchhhhhhHHHHHHHHHHHcccCCEEEEE
Confidence 33333322 234568999998 43211111 111225566667899999987775
|
| >d1ej0a_ c.66.1.2 (A:) RNA methyltransferase FtsJ {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: RNA methyltransferase FtsJ domain: RNA methyltransferase FtsJ species: Escherichia coli [TaxId: 562]
Probab=97.75 E-value=9.1e-05 Score=54.41 Aligned_cols=112 Identities=13% Similarity=0.186 Sum_probs=69.6
Q ss_pred hHHHHHHHHhhccCcccCCeEEEeCCCCcHHHHHHHHhC--CCeEEEEeCChHHHHHHHHHhHHhcCCCCCcceEeeecC
Q 026036 61 GTFSFAEWLMHHREWIERRRCIELGSGTGALAIFLRKAM--NLDITTSDYNDQEIEDNIAYNSTTNGITPALPHIKHSWG 138 (244)
Q Consensus 61 ~~~~l~~~~~~~~~~~~~~~VLdlG~G~G~~~~~~a~~~--~~~v~~~D~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 138 (244)
++..|.+......-..++.+||||||+.|..+..+.+.. ...|+++|+.+- + .+. .+..+..+..
T Consensus 6 aafKL~EI~~k~~l~k~~~~vlDLg~aPGgw~q~~~~~~~~~~~v~~vDl~~~---~---------~i~-~~~~~~~d~~ 72 (180)
T d1ej0a_ 6 AWFKLDEIQQSDKLFKPGMTVVDLGAAPGGWSQYVVTQIGGKGRIIACDLLPM---D---------PIV-GVDFLQGDFR 72 (180)
T ss_dssp HHHHHHHHHHHHCCCCTTCEEEEESCTTCHHHHHHHHHHCTTCEEEEEESSCC---C---------CCT-TEEEEESCTT
T ss_pred HHHHHHHHHHHhCccCCCCeEEEEeccCCcceEEEEeeccccceEEEeecccc---c---------ccC-CceEeecccc
Confidence 666777766555556688899999999999999887654 567999998762 1 010 1112222211
Q ss_pred CCC-------CCCCCCccEEEEcccccCCcChH---------HHHHHHHHHHHhcCCCCceEee
Q 026036 139 DAF-------PIPNPDWDLILASDILLYVKQYS---------NLIKSLSVLLKSYKPKDSQVGH 186 (244)
Q Consensus 139 ~~~-------~~~~~~fD~I~~~~~l~~~~~~~---------~l~~~l~~~~~~lk~gG~~~~~ 186 (244)
+.. .....++|+|++-... ...... -....+.-+.+.|++||.|++-
T Consensus 73 ~~~~~~~~~~~~~~~~~DlVlSD~ap-~~sg~~~~d~~~~~~L~~~~l~~a~~~Lk~gG~fV~K 135 (180)
T d1ej0a_ 73 DELVMKALLERVGDSKVQVVMSDMAP-NMSGTPAVDIPRAMYLVELALEMCRDVLAPGGSFVVK 135 (180)
T ss_dssp SHHHHHHHHHHHTTCCEEEEEECCCC-CCCSCHHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEE
T ss_pred cchhhhhhhhhccCcceeEEEecccc-hhcccchhHHHHHHHHHHHHHHhhhhccCCCCcEEEE
Confidence 110 0123579999884433 332222 2235666777999999988875
|
| >d2bm8a1 c.66.1.50 (A:2-233) Cephalosporin hydroxylase CmcI {Streptomyces clavuligerus [TaxId: 1901]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: CmcI-like domain: Cephalosporin hydroxylase CmcI species: Streptomyces clavuligerus [TaxId: 1901]
Probab=97.62 E-value=0.00011 Score=56.26 Aligned_cols=119 Identities=13% Similarity=0.064 Sum_probs=64.1
Q ss_pred cceeechHHHHHHHHhhccCcccCCeEEEeCCCCcHHHHHHHHhC-----CCeEEEEeCChHHHHHHHHHhHHhcCCCCC
Q 026036 55 ANFLWPGTFSFAEWLMHHREWIERRRCIELGSGTGALAIFLRKAM-----NLDITTSDYNDQEIEDNIAYNSTTNGITPA 129 (244)
Q Consensus 55 ~~~~w~~~~~l~~~~~~~~~~~~~~~VLdlG~G~G~~~~~~a~~~-----~~~v~~~D~~~~~l~~~~~~~~~~~~~~~~ 129 (244)
|..+|.....++-+- ......+.++|||+|++.|..++.++... .++|+++|+++... ... .... .+
T Consensus 59 G~p~~k~p~d~~~~~-eli~~~KPk~ILEIGv~~GgS~~~~a~~l~~~~~~~kI~giDId~~~~-~~~-----~~~~-~~ 130 (232)
T d2bm8a1 59 GLRMLKDPDTQAVYH-DMLWELRPRTIVELGVYNGGSLAWFRDLTKIMGIDCQVIGIDRDLSRC-QIP-----ASDM-EN 130 (232)
T ss_dssp TEECCSCHHHHHHHH-HHHHHHCCSEEEEECCTTSHHHHHHHHHHHHTTCCCEEEEEESCCTTC-CCC-----GGGC-TT
T ss_pred ceecccCHHHHHHHH-HHHHHhCCCEEEEECCCCchHHHHHHHHHHhcCCCceEEecCcChhhh-hhh-----hccc-cc
Confidence 555665555444331 11122345799999999998776655322 67899999987532 111 0011 22
Q ss_pred cceEeeecCCCCC---CCCCCccEEEEcccccCCcChHHHHHHHHHHHHhcCCCCceEee
Q 026036 130 LPHIKHSWGDAFP---IPNPDWDLILASDILLYVKQYSNLIKSLSVLLKSYKPKDSQVGH 186 (244)
Q Consensus 130 ~~~~~~~~~~~~~---~~~~~fD~I~~~~~l~~~~~~~~l~~~l~~~~~~lk~gG~~~~~ 186 (244)
+..+..+..+... .....+|+|+. |.- |+ ....+.. + .+.+.|++||.+++.
T Consensus 131 I~~i~gDs~~~~~~~~l~~~~~dlIfI-D~~-H~-~~~v~~~-~-~~~~lLk~GG~iIve 185 (232)
T d2bm8a1 131 ITLHQGDCSDLTTFEHLREMAHPLIFI-DNA-HA-NTFNIMK-W-AVDHLLEEGDYFIIE 185 (232)
T ss_dssp EEEEECCSSCSGGGGGGSSSCSSEEEE-ESS-CS-SHHHHHH-H-HHHHTCCTTCEEEEC
T ss_pred eeeeecccccHHHHHHHHhcCCCEEEE-cCC-cc-hHHHHHH-H-HHhcccCcCCEEEEE
Confidence 3333333322211 12336888776 543 32 2223323 3 356899999987765
|
| >d1piwa2 c.2.1.1 (A:153-320) Cinnamyl alcohol dehydrogenase, ADH6 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Cinnamyl alcohol dehydrogenase, ADH6 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=97.59 E-value=5.4e-05 Score=54.95 Aligned_cols=100 Identities=16% Similarity=0.112 Sum_probs=61.5
Q ss_pred ccCcccCCeEEEeCCC-CcHHHHHHHHhCCCeEEEEeCChHHHHHHHHHhHHhcCCCCCcceEeeecC-CCCCCCCCCcc
Q 026036 72 HREWIERRRCIELGSG-TGALAIFLRKAMNLDITTSDYNDQEIEDNIAYNSTTNGITPALPHIKHSWG-DAFPIPNPDWD 149 (244)
Q Consensus 72 ~~~~~~~~~VLdlG~G-~G~~~~~~a~~~~~~v~~~D~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~fD 149 (244)
.....+|.+||-+|+| .|..+..+++..+++|+++|.+++.+ +.+++. +.. ..+...-. +......+.||
T Consensus 22 ~~~~~~g~~vlI~GaG~vG~~a~q~ak~~G~~vi~~~~~~~k~-~~a~~l----Ga~---~~i~~~~~~~~~~~~~~~~d 93 (168)
T d1piwa2 22 RNGCGPGKKVGIVGLGGIGSMGTLISKAMGAETYVISRSSRKR-EDAMKM----GAD---HYIATLEEGDWGEKYFDTFD 93 (168)
T ss_dssp HTTCSTTCEEEEECCSHHHHHHHHHHHHHTCEEEEEESSSTTH-HHHHHH----TCS---EEEEGGGTSCHHHHSCSCEE
T ss_pred HhCcCCCCEEEEECCCCcchhHHHHhhhccccccccccchhHH-HHhhcc----CCc---EEeeccchHHHHHhhhcccc
Confidence 4566789999999997 67777777777789999999998765 555432 221 11111000 11111235799
Q ss_pred EEEEcccccCCcChHHHHHHHHHHHHhcCCCCceEee
Q 026036 150 LILASDILLYVKQYSNLIKSLSVLLKSYKPKDSQVGH 186 (244)
Q Consensus 150 ~I~~~~~l~~~~~~~~l~~~l~~~~~~lk~gG~~~~~ 186 (244)
+|+.....-.. ..+....+.++|+|++++.
T Consensus 94 ~vi~~~~~~~~-------~~~~~~~~~l~~~G~iv~~ 123 (168)
T d1piwa2 94 LIVVCASSLTD-------IDFNIMPKAMKVGGRIVSI 123 (168)
T ss_dssp EEEECCSCSTT-------CCTTTGGGGEEEEEEEEEC
T ss_pred eEEEEecCCcc-------chHHHHHHHhhccceEEEe
Confidence 88764322111 1123467889999998776
|
| >d1e3ja2 c.2.1.1 (A:143-312) Ketose reductase (sorbitol dehydrogenase) {Silverleaf whitefly (Bemisia argentifolii) [TaxId: 77855]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Ketose reductase (sorbitol dehydrogenase) species: Silverleaf whitefly (Bemisia argentifolii) [TaxId: 77855]
Probab=97.29 E-value=0.002 Score=46.19 Aligned_cols=99 Identities=7% Similarity=0.040 Sum_probs=62.7
Q ss_pred hccCcccCCeEEEeCCC-CcHHHHHHHHhCCCeEEEEeCChHHHHHHHHHhHHhcCCCCCcceEeeecCCCC--------
Q 026036 71 HHREWIERRRCIELGSG-TGALAIFLRKAMNLDITTSDYNDQEIEDNIAYNSTTNGITPALPHIKHSWGDAF-------- 141 (244)
Q Consensus 71 ~~~~~~~~~~VLdlG~G-~G~~~~~~a~~~~~~v~~~D~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------- 141 (244)
......+|.+||=+||| .|.++..+++..+++|+++|.+++.+ +.+++. +.. ..+..+..+..
T Consensus 20 ~~~~~~~g~~vlV~G~G~vG~~~~~~ak~~Ga~vi~v~~~~~r~-~~a~~~----ga~---~~~~~~~~~~~~~~~~~~~ 91 (170)
T d1e3ja2 20 RRAGVQLGTTVLVIGAGPIGLVSVLAAKAYGAFVVCTARSPRRL-EVAKNC----GAD---VTLVVDPAKEEESSIIERI 91 (170)
T ss_dssp HHHTCCTTCEEEEECCSHHHHHHHHHHHHTTCEEEEEESCHHHH-HHHHHT----TCS---EEEECCTTTSCHHHHHHHH
T ss_pred HHhCCCCCCEEEEEcccccchhhHhhHhhhcccccccchHHHHH-HHHHHc----CCc---EEEeccccccccchhhhhh
Confidence 33456789999999987 67777777887889999999999765 555442 110 00111100000
Q ss_pred -CCCCCCccEEEEcccccCCcChHHHHHHHHHHHHhcCCCCceEee
Q 026036 142 -PIPNPDWDLILASDILLYVKQYSNLIKSLSVLLKSYKPKDSQVGH 186 (244)
Q Consensus 142 -~~~~~~fD~I~~~~~l~~~~~~~~l~~~l~~~~~~lk~gG~~~~~ 186 (244)
......+|+|+-. . ..+ .++....+.++++|++++.
T Consensus 92 ~~~~g~g~D~vid~--~----g~~---~~~~~a~~~~~~~G~iv~~ 128 (170)
T d1e3ja2 92 RSAIGDLPNVTIDC--S----GNE---KCITIGINITRTGGTLMLV 128 (170)
T ss_dssp HHHSSSCCSEEEEC--S----CCH---HHHHHHHHHSCTTCEEEEC
T ss_pred hcccccCCceeeec--C----CCh---HHHHHHHHHHhcCCceEEE
Confidence 0012468988752 2 122 5677788999999998776
|
| >d2oyra1 c.66.1.55 (A:1-250) Hypothetical protein YhiQ {Shigella flexneri [TaxId: 623]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: YhiQ-like domain: Hypothetical protein YhiQ species: Shigella flexneri [TaxId: 623]
Probab=97.26 E-value=0.0005 Score=52.79 Aligned_cols=95 Identities=14% Similarity=0.106 Sum_probs=55.4
Q ss_pred CeEEEeCCCCcHHHHHHHHhCCCeEEEEeCChHHHHHHHHHhHH---hcCCC-C-CcceEeeecCCC---CCCCCCCccE
Q 026036 79 RRCIELGSGTGALAIFLRKAMNLDITTSDYNDQEIEDNIAYNST---TNGIT-P-ALPHIKHSWGDA---FPIPNPDWDL 150 (244)
Q Consensus 79 ~~VLdlG~G~G~~~~~~a~~~~~~v~~~D~~~~~l~~~~~~~~~---~~~~~-~-~~~~~~~~~~~~---~~~~~~~fD~ 150 (244)
.+|||.-||.|.-++.+|.. +++|+++|.++... ..++.+.. .+.-. . ....+++..+|. +....++||+
T Consensus 90 ~~VlD~TaGlG~Da~vlA~~-G~~V~~iEr~p~l~-~ll~d~l~r~~~~~~~~~~~~~ri~li~~Ds~~~L~~~~~~~Dv 167 (250)
T d2oyra1 90 PDVVDATAGLGRDAFVLASV-GCRVRMLERNPVVA-ALLDDGLARGYADAEIGGWLQERLQLIHASSLTALTDITPRPQV 167 (250)
T ss_dssp CCEEETTCTTCHHHHHHHHH-TCCEEEEECCHHHH-HHHHHHHHHHHHCTTTHHHHHHHEEEEESCHHHHSTTCSSCCSE
T ss_pred CEEEECCCcccHHHHHHHhC-CCEEEEEccCHHHH-HHHHHHHHHHHhCchhHHHHhhhheeecCcHHHHHhccCCCCCE
Confidence 48999999999999999977 68999999999642 33333222 11110 0 112344445443 3334567999
Q ss_pred EEEcccccCCcChHHH-HHHHHHHHHh
Q 026036 151 ILASDILLYVKQYSNL-IKSLSVLLKS 176 (244)
Q Consensus 151 I~~~~~l~~~~~~~~l-~~~l~~~~~~ 176 (244)
|+. |+.|.+.....+ .+-++.+..+
T Consensus 168 IYl-DPMFp~~~Ksa~~kk~m~~l~~l 193 (250)
T d2oyra1 168 VYL-DPMFPHKQKSALVKKEMRVFQSL 193 (250)
T ss_dssp EEE-CCCCCCCCC-----HHHHHHHHH
T ss_pred EEE-CCCCccccccccchhHHHHHHhh
Confidence 997 776554433322 2344444443
|
| >d1vj0a2 c.2.1.1 (A:156-337) Hypothetical protein TM0436 {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Hypothetical protein TM0436 species: Thermotoga maritima [TaxId: 2336]
Probab=97.12 E-value=0.00011 Score=54.01 Aligned_cols=97 Identities=10% Similarity=0.095 Sum_probs=61.5
Q ss_pred hccCcccCCeEEEeCCC-CcHHHHHHHHhCCC-eEEEEeCChHHHHHHHHHhHHhcCCCCCcceEeeecCCC--------
Q 026036 71 HHREWIERRRCIELGSG-TGALAIFLRKAMNL-DITTSDYNDQEIEDNIAYNSTTNGITPALPHIKHSWGDA-------- 140 (244)
Q Consensus 71 ~~~~~~~~~~VLdlG~G-~G~~~~~~a~~~~~-~v~~~D~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~-------- 140 (244)
+.....+|.+||=+||| .|..++.+++..++ +|+++|.+++.+ +.+++. +.. ..++..+.
T Consensus 22 ~~~~~~~G~~VlV~GaG~iG~~~~~~ak~~Ga~~Vi~~~~~~~~~-~~a~~l----Ga~-----~vi~~~~~~~~~~~~~ 91 (182)
T d1vj0a2 22 EYPESFAGKTVVIQGAGPLGLFGVVIARSLGAENVIVIAGSPNRL-KLAEEI----GAD-----LTLNRRETSVEERRKA 91 (182)
T ss_dssp TCSSCCBTCEEEEECCSHHHHHHHHHHHHTTBSEEEEEESCHHHH-HHHHHT----TCS-----EEEETTTSCHHHHHHH
T ss_pred HHhCCCCCCEEEEECCCccchhheecccccccccccccccccccc-cccccc----cce-----EEEeccccchHHHHHH
Confidence 33456789999999987 57777777877776 799999999875 555432 210 11111111
Q ss_pred -CC-CCCCCccEEEEcccccCCcChHHHHHHHHHHHHhcCCCCceEee
Q 026036 141 -FP-IPNPDWDLILASDILLYVKQYSNLIKSLSVLLKSYKPKDSQVGH 186 (244)
Q Consensus 141 -~~-~~~~~fD~I~~~~~l~~~~~~~~l~~~l~~~~~~lk~gG~~~~~ 186 (244)
.. .....+|+|+- +. . .+ .+++...+.+++||++++.
T Consensus 92 i~~~~~~~g~Dvvid--~v---G-~~---~~~~~a~~~l~~~G~iv~~ 130 (182)
T d1vj0a2 92 IMDITHGRGADFILE--AT---G-DS---RALLEGSELLRRGGFYSVA 130 (182)
T ss_dssp HHHHTTTSCEEEEEE--CS---S-CT---THHHHHHHHEEEEEEEEEC
T ss_pred HHHhhCCCCceEEee--cC---C-ch---hHHHHHHHHhcCCCEEEEE
Confidence 00 11235899874 22 1 12 4566778999999998766
|
| >d1yb5a2 c.2.1.1 (A:121-294) Quinone oxidoreductase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Quinone oxidoreductase species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.04 E-value=0.0012 Score=47.69 Aligned_cols=96 Identities=17% Similarity=0.133 Sum_probs=62.9
Q ss_pred hccCcccCCeEEEeCC--CCcHHHHHHHHhCCCeEEEEeCChHHHHHHHHHhHHhcCCCCCcceEeeecCCCC-------
Q 026036 71 HHREWIERRRCIELGS--GTGALAIFLRKAMNLDITTSDYNDQEIEDNIAYNSTTNGITPALPHIKHSWGDAF------- 141 (244)
Q Consensus 71 ~~~~~~~~~~VLdlG~--G~G~~~~~~a~~~~~~v~~~D~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~------- 141 (244)
+...+.+|.+||=.|+ |.|..++.+++..+++|++++.+++.. +.+++ .+.. .. ++..+..
T Consensus 22 ~~~~~~~g~~VlV~Ga~G~vG~~aiq~a~~~G~~vi~~~~~~~~~-~~~~~----~Ga~---~v--i~~~~~~~~~~i~~ 91 (174)
T d1yb5a2 22 HSACVKAGESVLVHGASGGVGLAACQIARAYGLKILGTAGTEEGQ-KIVLQ----NGAH---EV--FNHREVNYIDKIKK 91 (174)
T ss_dssp TTSCCCTTCEEEEETCSSHHHHHHHHHHHHTTCEEEEEESSHHHH-HHHHH----TTCS---EE--EETTSTTHHHHHHH
T ss_pred HHhCCCCCCEEEEEeccccccccccccccccCccccccccccccc-ccccc----cCcc---cc--cccccccHHHHhhh
Confidence 3446678999999996 467777888888899999999888654 44433 2321 11 1221110
Q ss_pred CCCCCCccEEEEcccccCCcChHHHHHHHHHHHHhcCCCCceEee
Q 026036 142 PIPNPDWDLILASDILLYVKQYSNLIKSLSVLLKSYKPKDSQVGH 186 (244)
Q Consensus 142 ~~~~~~fD~I~~~~~l~~~~~~~~l~~~l~~~~~~lk~gG~~~~~ 186 (244)
......+|+|+.+ . .. ..++...+.++|+|+++..
T Consensus 92 ~t~~~g~d~v~d~--~-----g~---~~~~~~~~~l~~~G~iv~~ 126 (174)
T d1yb5a2 92 YVGEKGIDIIIEM--L-----AN---VNLSKDLSLLSHGGRVIVV 126 (174)
T ss_dssp HHCTTCEEEEEES--C-----HH---HHHHHHHHHEEEEEEEEEC
T ss_pred hhccCCceEEeec--c-----cH---HHHHHHHhccCCCCEEEEE
Confidence 0123469998863 2 12 4677788999999998875
|
| >d1llua2 c.2.1.1 (A:144-309) Alcohol dehydrogenase {Pseudomonas aeruginosa [TaxId: 287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Alcohol dehydrogenase species: Pseudomonas aeruginosa [TaxId: 287]
Probab=97.02 E-value=0.00079 Score=48.28 Aligned_cols=97 Identities=12% Similarity=0.090 Sum_probs=58.7
Q ss_pred hccCcccCCeEEEeCCC-CcHHHHHHHHhCCCeEEEEeCChHHHHHHHHHhHHhcCCCCCcceEeeecCCCCC-----CC
Q 026036 71 HHREWIERRRCIELGSG-TGALAIFLRKAMNLDITTSDYNDQEIEDNIAYNSTTNGITPALPHIKHSWGDAFP-----IP 144 (244)
Q Consensus 71 ~~~~~~~~~~VLdlG~G-~G~~~~~~a~~~~~~v~~~D~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~ 144 (244)
++....+|.+||=+||| .|..+..+++..+.+|+++|.+++.+ +.+++. +.. .. ++..+... ..
T Consensus 21 ~~~~~~~g~~VlV~GaG~vG~~~~~~ak~~G~~Vi~~~~~~~~~-~~a~~~----Ga~---~~--i~~~~~~~~~~~~~~ 90 (166)
T d1llua2 21 KQTNARPGQWVAISGIGGLGHVAVQYARAMGLHVAAIDIDDAKL-ELARKL----GAS---LT--VNARQEDPVEAIQRD 90 (166)
T ss_dssp HHHTCCTTCEEEEECCSHHHHHHHHHHHHTTCEEEEEESCHHHH-HHHHHT----TCS---EE--EETTTSCHHHHHHHH
T ss_pred HHhCCCCCCEEEEeeccccHHHHHHHHHHcCCccceecchhhHH-Hhhhcc----Ccc---cc--ccccchhHHHHHHHh
Confidence 34556789999999986 56777777887789999999998765 554432 221 11 11111100 00
Q ss_pred CCCccEEEEcccccCCcChHHHHHHHHHHHHhcCCCCceEee
Q 026036 145 NPDWDLILASDILLYVKQYSNLIKSLSVLLKSYKPKDSQVGH 186 (244)
Q Consensus 145 ~~~fD~I~~~~~l~~~~~~~~l~~~l~~~~~~lk~gG~~~~~ 186 (244)
...+|.++.... .+ ..++...+.++|+|++++.
T Consensus 91 ~~g~~~~i~~~~------~~---~~~~~~~~~l~~~G~iv~~ 123 (166)
T d1llua2 91 IGGAHGVLVTAV------SN---SAFGQAIGMARRGGTIALV 123 (166)
T ss_dssp HSSEEEEEECCS------CH---HHHHHHHTTEEEEEEEEEC
T ss_pred hcCCcccccccc------cc---hHHHHHHHHhcCCcEEEEE
Confidence 122343333111 12 5667788999999998775
|
| >d1kola2 c.2.1.1 (A:161-355) Formaldehyde dehydrogenase {Pseudomonas putida [TaxId: 303]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Formaldehyde dehydrogenase species: Pseudomonas putida [TaxId: 303]
Probab=97.01 E-value=0.00021 Score=53.12 Aligned_cols=107 Identities=12% Similarity=0.047 Sum_probs=63.7
Q ss_pred hhccCcccCCeEEEeCCCC-cHHHHHHHHhC-CCeEEEEeCChHHHHHHHHHhHHhcCCCCCcceEeeecCCC-C-----
Q 026036 70 MHHREWIERRRCIELGSGT-GALAIFLRKAM-NLDITTSDYNDQEIEDNIAYNSTTNGITPALPHIKHSWGDA-F----- 141 (244)
Q Consensus 70 ~~~~~~~~~~~VLdlG~G~-G~~~~~~a~~~-~~~v~~~D~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~-~----- 141 (244)
.......+|.+||-+|||. |..+..+++.. ..+|+++|.+++.+ +.+++. +. .......+. .
T Consensus 18 ~~~a~v~~G~tVlV~GaG~vGl~a~~~ak~~ga~~Vi~~d~~~~rl-~~a~~~----Ga-----~~~~~~~~~~~~~~i~ 87 (195)
T d1kola2 18 AVTAGVGPGSTVYVAGAGPVGLAAAASARLLGAAVVIVGDLNPARL-AHAKAQ----GF-----EIADLSLDTPLHEQIA 87 (195)
T ss_dssp HHHTTCCTTCEEEEECCSHHHHHHHHHHHHTTCSEEEEEESCHHHH-HHHHHT----TC-----EEEETTSSSCHHHHHH
T ss_pred HHHhCCCCCCEEEEECcCHHHHHHHHHHHhhcccceeeecccchhh-Hhhhhc----cc-----cEEEeCCCcCHHHHHH
Confidence 3445677999999999986 66666777655 55899999998765 555443 22 011111110 0
Q ss_pred C-CCCCCccEEEEccccc------CCcChHHHHHHHHHHHHhcCCCCceEee
Q 026036 142 P-IPNPDWDLILASDILL------YVKQYSNLIKSLSVLLKSYKPKDSQVGH 186 (244)
Q Consensus 142 ~-~~~~~fD~I~~~~~l~------~~~~~~~l~~~l~~~~~~lk~gG~~~~~ 186 (244)
. .....+|+++-.--.. .......-..+++...+.++|||++.+.
T Consensus 88 ~~t~g~g~D~vid~vG~~~~~~~~~~~~~~~~~~~l~~~~~~~r~gG~v~~~ 139 (195)
T d1kola2 88 ALLGEPEVDCAVDAVGFEARGHGHEGAKHEAPATVLNSLMQVTRVAGKIGIP 139 (195)
T ss_dssp HHHSSSCEEEEEECCCTTCBCSSTTGGGSBCTTHHHHHHHHHEEEEEEEEEC
T ss_pred HHhCCCCcEEEEECccccccCCcccceeecCcHHHHHHHHHHHhcCCEEEEe
Confidence 0 0123588888532210 0000001126888899999999998877
|
| >d1jqba2 c.2.1.1 (A:1140-1313) Bacterial secondary alcohol dehydrogenase {Clostridium beijerinckii [TaxId: 1520]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Bacterial secondary alcohol dehydrogenase species: Clostridium beijerinckii [TaxId: 1520]
Probab=96.93 E-value=0.00039 Score=50.56 Aligned_cols=98 Identities=15% Similarity=0.131 Sum_probs=62.2
Q ss_pred hhccCcccCCeEEEeCCCC-cHHHHHHHHhCCC-eEEEEeCChHHHHHHHHHhHHhcCCCCCcceEeeecCCCC------
Q 026036 70 MHHREWIERRRCIELGSGT-GALAIFLRKAMNL-DITTSDYNDQEIEDNIAYNSTTNGITPALPHIKHSWGDAF------ 141 (244)
Q Consensus 70 ~~~~~~~~~~~VLdlG~G~-G~~~~~~a~~~~~-~v~~~D~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~------ 141 (244)
.+.....+|.+||=+|||. |..++.+++..++ +|+++|.+++.+ +.+++. +.. .. ++..+..
T Consensus 20 ~~~a~~~~g~~VlI~GaG~vGl~~~q~ak~~Ga~~Vi~~d~~~~r~-~~a~~l----Ga~---~~--i~~~~~~~~~~v~ 89 (174)
T d1jqba2 20 AELADIEMGSSVVVIGIGAVGLMGIAGAKLRGAGRIIGVGSRPICV-EAAKFY----GAT---DI--LNYKNGHIEDQVM 89 (174)
T ss_dssp HHHTTCCTTCCEEEECCSHHHHHHHHHHHTTTCSCEEEECCCHHHH-HHHHHH----TCS---EE--ECGGGSCHHHHHH
T ss_pred HHHhCCCCCCEEEEEcCCcchhhhhhhhhcccccccccccchhhhH-HHHHhh----Ccc---cc--ccccchhHHHHHH
Confidence 3445677899999999974 7888888887765 799999998765 554432 210 01 1111110
Q ss_pred CC-CCCCccEEEEcccccCCcChHHHHHHHHHHHHhcCCCCceEee
Q 026036 142 PI-PNPDWDLILASDILLYVKQYSNLIKSLSVLLKSYKPKDSQVGH 186 (244)
Q Consensus 142 ~~-~~~~fD~I~~~~~l~~~~~~~~l~~~l~~~~~~lk~gG~~~~~ 186 (244)
.. ....+|+|+-.-. .+ .+++...+.++|+|++++.
T Consensus 90 ~~t~g~G~D~vid~~g------~~---~~~~~a~~~~~~~G~iv~~ 126 (174)
T d1jqba2 90 KLTNGKGVDRVIMAGG------GS---ETLSQAVKMVKPGGIISNI 126 (174)
T ss_dssp HHTTTSCEEEEEECSS------CT---THHHHHHHHEEEEEEEEEC
T ss_pred HHhhccCcceEEEccC------CH---HHHHHHHHHHhcCCEEEEE
Confidence 01 1235998875322 12 4556678999999998876
|
| >d1pl8a2 c.2.1.1 (A:146-316) Ketose reductase (sorbitol dehydrogenase) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Ketose reductase (sorbitol dehydrogenase) species: Human (Homo sapiens) [TaxId: 9606]
Probab=96.89 E-value=0.0004 Score=50.21 Aligned_cols=98 Identities=11% Similarity=0.096 Sum_probs=60.5
Q ss_pred ccCcccCCeEEEeCCC-CcHHHHHHHHhCCC-eEEEEeCChHHHHHHHHHhHHhcCCCCCcceEeeecCCCCC-------
Q 026036 72 HREWIERRRCIELGSG-TGALAIFLRKAMNL-DITTSDYNDQEIEDNIAYNSTTNGITPALPHIKHSWGDAFP------- 142 (244)
Q Consensus 72 ~~~~~~~~~VLdlG~G-~G~~~~~~a~~~~~-~v~~~D~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------- 142 (244)
.....+|.+||=+||| .|..+..+++..++ +|+++|.+++.+ +.+++. +.. ..+.....+...
T Consensus 21 ~~~~~~gd~VlI~G~G~iG~~~~~~a~~~G~~~Vi~~d~~~~rl-~~a~~~----Ga~---~~~~~~~~~~~~~~~~~~~ 92 (171)
T d1pl8a2 21 RGGVTLGHKVLVCGAGPIGMVTLLVAKAMGAAQVVVTDLSATRL-SKAKEI----GAD---LVLQISKESPQEIARKVEG 92 (171)
T ss_dssp HHTCCTTCEEEEECCSHHHHHHHHHHHHTTCSEEEEEESCHHHH-HHHHHT----TCS---EEEECSSCCHHHHHHHHHH
T ss_pred HhCCCCCCEEEEECCCccHHHHHHHHHHcCCceEEeccCCHHHH-HHHHHh----CCc---ccccccccccccccccccc
Confidence 3456788999999997 45556666666665 799999999865 555432 221 011111001000
Q ss_pred CCCCCccEEEEcccccCCcChHHHHHHHHHHHHhcCCCCceEee
Q 026036 143 IPNPDWDLILASDILLYVKQYSNLIKSLSVLLKSYKPKDSQVGH 186 (244)
Q Consensus 143 ~~~~~fD~I~~~~~l~~~~~~~~l~~~l~~~~~~lk~gG~~~~~ 186 (244)
.....+|+|+-.-. .+ .+++...+.+++||++++.
T Consensus 93 ~~g~g~Dvvid~~G------~~---~~~~~a~~~~~~gG~iv~~ 127 (171)
T d1pl8a2 93 QLGCKPEVTIECTG------AE---ASIQAGIYATRSGGTLVLV 127 (171)
T ss_dssp HHTSCCSEEEECSC------CH---HHHHHHHHHSCTTCEEEEC
T ss_pred cCCCCceEEEeccC------Cc---hhHHHHHHHhcCCCEEEEE
Confidence 01246898876322 23 5677888999999998877
|
| >d1rjwa2 c.2.1.1 (A:138-305) Alcohol dehydrogenase {Bacillus stearothermophilus [TaxId: 1422]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Alcohol dehydrogenase species: Bacillus stearothermophilus [TaxId: 1422]
Probab=96.67 E-value=0.0024 Score=45.54 Aligned_cols=97 Identities=13% Similarity=0.052 Sum_probs=59.1
Q ss_pred hccCcccCCeEEEeCCC-CcHHHHHHHHhCCCeEEEEeCChHHHHHHHHHhHHhcCCCCCcceEeeecCCCCC-----CC
Q 026036 71 HHREWIERRRCIELGSG-TGALAIFLRKAMNLDITTSDYNDQEIEDNIAYNSTTNGITPALPHIKHSWGDAFP-----IP 144 (244)
Q Consensus 71 ~~~~~~~~~~VLdlG~G-~G~~~~~~a~~~~~~v~~~D~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~ 144 (244)
......+|.+||=.||| .|..++.+++..+.+|+++|.+++.+ +.+++ .+.. ...+..+... ..
T Consensus 21 ~~~~~~~g~~vlv~G~G~iG~~a~~~a~~~g~~v~~~~~~~~r~-~~~k~----~Ga~-----~~~~~~~~~~~~~~~~~ 90 (168)
T d1rjwa2 21 KVTGAKPGEWVAIYGIGGLGHVAVQYAKAMGLNVVAVDIGDEKL-ELAKE----LGAD-----LVVNPLKEDAAKFMKEK 90 (168)
T ss_dssp HHHTCCTTCEEEEECCSTTHHHHHHHHHHTTCEEEEECSCHHHH-HHHHH----TTCS-----EEECTTTSCHHHHHHHH
T ss_pred HHhCCCCCCEEEEeecccchhhhhHHHhcCCCeEeccCCCHHHh-hhhhh----cCcc-----eecccccchhhhhcccc
Confidence 34456789999999987 55666777777788999999998765 55443 2321 1111211100 00
Q ss_pred CCCccEEEEcccccCCcChHHHHHHHHHHHHhcCCCCceEee
Q 026036 145 NPDWDLILASDILLYVKQYSNLIKSLSVLLKSYKPKDSQVGH 186 (244)
Q Consensus 145 ~~~fD~I~~~~~l~~~~~~~~l~~~l~~~~~~lk~gG~~~~~ 186 (244)
...+|.++. ++. .. ..+....+.++|+|++++.
T Consensus 91 ~~~~~~~v~-~~~-----~~---~~~~~a~~~l~~~G~i~~~ 123 (168)
T d1rjwa2 91 VGGVHAAVV-TAV-----SK---PAFQSAYNSIRRGGACVLV 123 (168)
T ss_dssp HSSEEEEEE-SSC-----CH---HHHHHHHHHEEEEEEEEEC
T ss_pred cCCCceEEe-ecC-----CH---HHHHHHHHHhccCCceEec
Confidence 122444443 121 22 5677788999999998876
|
| >d1uufa2 c.2.1.1 (A:145-312) Hypothetical protein YahK {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Hypothetical protein YahK species: Escherichia coli [TaxId: 562]
Probab=96.56 E-value=0.00062 Score=49.04 Aligned_cols=97 Identities=15% Similarity=0.128 Sum_probs=61.2
Q ss_pred hccCcccCCeEEEeCCC-CcHHHHHHHHhCCCeEEEEeCChHHHHHHHHHhHHhcCCCCCcceEeeecCCC--CCCCCCC
Q 026036 71 HHREWIERRRCIELGSG-TGALAIFLRKAMNLDITTSDYNDQEIEDNIAYNSTTNGITPALPHIKHSWGDA--FPIPNPD 147 (244)
Q Consensus 71 ~~~~~~~~~~VLdlG~G-~G~~~~~~a~~~~~~v~~~D~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~ 147 (244)
......+|.+||=+||| .|.+++.+++..+++++++|.+++.. +.+++. +.. ..++..+. .......
T Consensus 24 ~~~~~~~G~~VlI~GaG~vG~~a~qlak~~Ga~~i~~~~~~~~~-~~a~~l----Gad-----~~i~~~~~~~~~~~~~~ 93 (168)
T d1uufa2 24 RHWQAGPGKKVGVVGIGGLGHMGIKLAHAMGAHVVAFTTSEAKR-EAAKAL----GAD-----EVVNSRNADEMAAHLKS 93 (168)
T ss_dssp HHTTCCTTCEEEEECCSHHHHHHHHHHHHTTCEEEEEESSGGGH-HHHHHH----TCS-----EEEETTCHHHHHTTTTC
T ss_pred HHhCCCCCCEEEEeccchHHHHHHHHhhcccccchhhccchhHH-HHHhcc----CCc-----EEEECchhhHHHHhcCC
Confidence 44567789999999986 56777778888899999999988754 444432 220 11122111 1112346
Q ss_pred ccEEEEcccccCCcChHHHHHHHHHHHHhcCCCCceEee
Q 026036 148 WDLILASDILLYVKQYSNLIKSLSVLLKSYKPKDSQVGH 186 (244)
Q Consensus 148 fD~I~~~~~l~~~~~~~~l~~~l~~~~~~lk~gG~~~~~ 186 (244)
+|+++-.-.- + ..+....+.++++|++++.
T Consensus 94 ~D~vid~~g~------~---~~~~~~~~~l~~~G~iv~~ 123 (168)
T d1uufa2 94 FDFILNTVAA------P---HNLDDFTTLLKRDGTMTLV 123 (168)
T ss_dssp EEEEEECCSS------C---CCHHHHHTTEEEEEEEEEC
T ss_pred Cceeeeeeec------c---hhHHHHHHHHhcCCEEEEe
Confidence 9988753221 1 3345567899999998876
|
| >d1e3ia2 c.2.1.1 (A:168-341) Alcohol dehydrogenase {Mouse (Mus musculus), class II [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Alcohol dehydrogenase species: Mouse (Mus musculus), class II [TaxId: 10090]
Probab=96.49 E-value=0.008 Score=43.27 Aligned_cols=100 Identities=17% Similarity=0.105 Sum_probs=63.6
Q ss_pred hhccCcccCCeEEEeCCCC-cHHHHHHHHhCCC-eEEEEeCChHHHHHHHHHhHHhcCCCCCcceEeeecCCCC------
Q 026036 70 MHHREWIERRRCIELGSGT-GALAIFLRKAMNL-DITTSDYNDQEIEDNIAYNSTTNGITPALPHIKHSWGDAF------ 141 (244)
Q Consensus 70 ~~~~~~~~~~~VLdlG~G~-G~~~~~~a~~~~~-~v~~~D~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~------ 141 (244)
.....+.+|.+||=+|||. |..++.+++..++ +|+++|.+++.+ +.+++. +.. ..+.....+..
T Consensus 21 ~~~a~v~~G~~VlV~G~G~iGl~a~~~ak~~Ga~~Vi~~d~~~~r~-~~a~~~----Ga~---~~i~~~~~~~~~~~~~~ 92 (174)
T d1e3ia2 21 INTAKVTPGSTCAVFGLGCVGLSAIIGCKIAGASRIIAIDINGEKF-PKAKAL----GAT---DCLNPRELDKPVQDVIT 92 (174)
T ss_dssp HTTSCCCTTCEEEEECCSHHHHHHHHHHHHTTCSEEEEECSCGGGH-HHHHHT----TCS---EEECGGGCSSCHHHHHH
T ss_pred HHhhCCCCCCEEEEECCChHHHHHHHHHHHhCCceeeeeccchHHH-HHHHHh----CCC---cccCCccchhhhhhhHh
Confidence 3445677999999999985 8888888887765 799999998765 555442 221 01111111110
Q ss_pred CCCCCCccEEEEcccccCCcChHHHHHHHHHHHHhcCCC-CceEee
Q 026036 142 PIPNPDWDLILASDILLYVKQYSNLIKSLSVLLKSYKPK-DSQVGH 186 (244)
Q Consensus 142 ~~~~~~fD~I~~~~~l~~~~~~~~l~~~l~~~~~~lk~g-G~~~~~ 186 (244)
......+|+|+-. . ..+ .++....+.+++| |++++.
T Consensus 93 ~~~~~G~d~vie~--~----G~~---~~~~~a~~~~~~g~G~~v~v 129 (174)
T d1e3ia2 93 ELTAGGVDYSLDC--A----GTA---QTLKAAVDCTVLGWGSCTVV 129 (174)
T ss_dssp HHHTSCBSEEEES--S----CCH---HHHHHHHHTBCTTTCEEEEC
T ss_pred hhhcCCCcEEEEe--c----ccc---hHHHHHHHHhhcCCeEEEec
Confidence 0113468988752 1 223 6777888999996 988776
|
| >d1i4wa_ c.66.1.24 (A:) Transcription factor sc-mtTFB {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: rRNA adenine dimethylase-like domain: Transcription factor sc-mtTFB species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=96.21 E-value=0.012 Score=46.80 Aligned_cols=43 Identities=9% Similarity=0.116 Sum_probs=35.3
Q ss_pred cCCeEEEeCCCCcHHHHHHHHhC-CCeEEEEeCChHHHHHHHHHh
Q 026036 77 ERRRCIELGSGTGALAIFLRKAM-NLDITTSDYNDQEIEDNIAYN 120 (244)
Q Consensus 77 ~~~~VLdlG~G~G~~~~~~a~~~-~~~v~~~D~~~~~l~~~~~~~ 120 (244)
++..|||+|.|.|.++..+.... ..+|+++|+++..+ +.++..
T Consensus 43 ~~~~VlEIGPG~G~LT~~Ll~~~~~~~v~~iE~D~~~~-~~L~~~ 86 (322)
T d1i4wa_ 43 EELKVLDLYPGVGIQSAIFYNKYCPRQYSLLEKRSSLY-KFLNAK 86 (322)
T ss_dssp TTCEEEEESCTTCHHHHHHHHHHCCSEEEEECCCHHHH-HHHHHH
T ss_pred CCCeEEEECCCCCHHHHHHHhcCCCCEEEEEECCHHHH-HHHHHh
Confidence 56789999999999999998764 46899999999865 666544
|
| >d1g60a_ c.66.1.11 (A:) Methyltransferase mboII {Moraxella bovis [TaxId: 476]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Type II DNA methylase domain: Methyltransferase mboII species: Moraxella bovis [TaxId: 476]
Probab=96.10 E-value=0.0085 Score=45.42 Aligned_cols=56 Identities=14% Similarity=0.228 Sum_probs=42.9
Q ss_pred HHHHHHHhhccCcccCCeEEEeCCCCcHHHHHHHHhCCCeEEEEeCChHHHHHHHHHhH
Q 026036 63 FSFAEWLMHHREWIERRRCIELGSGTGALAIFLRKAMNLDITTSDYNDQEIEDNIAYNS 121 (244)
Q Consensus 63 ~~l~~~~~~~~~~~~~~~VLdlG~G~G~~~~~~a~~~~~~v~~~D~~~~~l~~~~~~~~ 121 (244)
..|.+++.+... .+|..|||--||+|..+.++.+ .+.+.+|+|++++.+ +.+++++
T Consensus 199 ~~L~~~lI~~~s-~~gd~VlDpF~GSGTT~~aa~~-~~R~~ig~El~~~y~-~~a~~Rl 254 (256)
T d1g60a_ 199 RDLIERIIRASS-NPNDLVLDCFMGSGTTAIVAKK-LGRNFIGCDMNAEYV-NQANFVL 254 (256)
T ss_dssp HHHHHHHHHHHC-CTTCEEEESSCTTCHHHHHHHH-TTCEEEEEESCHHHH-HHHHHHH
T ss_pred hhHHHHHHHHhC-CCCCEEEECCCCchHHHHHHHH-cCCeEEEEeCCHHHH-HHHHHHH
Confidence 455555554433 4789999999999999987755 589999999999876 6666554
|
| >d1xa0a2 c.2.1.1 (A:119-294) B. subtilis YhfP homologue {Bacillus stearothermophilus [TaxId: 1422]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: B. subtilis YhfP homologue species: Bacillus stearothermophilus [TaxId: 1422]
Probab=96.09 E-value=0.0035 Score=45.43 Aligned_cols=102 Identities=18% Similarity=0.246 Sum_probs=61.1
Q ss_pred HhhccCcccCCeEEEeCC--CCcHHHHHHHHhCCCeEEEEeCChHHHHHHHHHhHHhcCCCCCcceEeeecCCCC-CCCC
Q 026036 69 LMHHREWIERRRCIELGS--GTGALAIFLRKAMNLDITTSDYNDQEIEDNIAYNSTTNGITPALPHIKHSWGDAF-PIPN 145 (244)
Q Consensus 69 ~~~~~~~~~~~~VLdlG~--G~G~~~~~~a~~~~~~v~~~D~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~ 145 (244)
+.......+|.+||=-|+ |.|..++-+++..+++|+++--+++.. +.++.. +....+ ...-.+.+.. ....
T Consensus 23 L~~~g~~~~g~~VLI~gaaGGVG~~aiQlak~~Ga~Viat~~s~~k~-~~~~~l----Ga~~vi-~~~~~~~~~~~~~~~ 96 (176)
T d1xa0a2 23 LEEHGLTPERGPVLVTGATGGVGSLAVSMLAKRGYTVEASTGKAAEH-DYLRVL----GAKEVL-AREDVMAERIRPLDK 96 (176)
T ss_dssp HHHTTCCGGGCCEEESSTTSHHHHHHHHHHHHTTCCEEEEESCTTCH-HHHHHT----TCSEEE-ECC---------CCS
T ss_pred HHHhCCCCCCCEEEEEeccchHHHHHHHHHHHcCCceEEecCchHHH-HHHHhc----ccceee-ecchhHHHHHHHhhc
Confidence 333445567889999986 455777788888899999999887654 555432 221001 1111111111 1234
Q ss_pred CCccEEEEcccccCCcChHHHHHHHHHHHHhcCCCCceEee
Q 026036 146 PDWDLILASDILLYVKQYSNLIKSLSVLLKSYKPKDSQVGH 186 (244)
Q Consensus 146 ~~fD~I~~~~~l~~~~~~~~l~~~l~~~~~~lk~gG~~~~~ 186 (244)
+.+|+|+- ++ - . ..+....+.|+|||+++..
T Consensus 97 ~gvD~vid--~v-g----g---~~~~~~l~~l~~~Griv~~ 127 (176)
T d1xa0a2 97 QRWAAAVD--PV-G----G---RTLATVLSRMRYGGAVAVS 127 (176)
T ss_dssp CCEEEEEE--CS-T----T---TTHHHHHHTEEEEEEEEEC
T ss_pred cCcCEEEE--cC-C----c---hhHHHHHHHhCCCceEEEe
Confidence 57998774 33 1 1 3456688999999998876
|
| >d1booa_ c.66.1.11 (A:) m.PvuII N4 cytosine-specific DNA methyltransferase {Proteus vulgaris [TaxId: 585]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Type II DNA methylase domain: m.PvuII N4 cytosine-specific DNA methyltransferase species: Proteus vulgaris [TaxId: 585]
Probab=95.93 E-value=0.0089 Score=46.80 Aligned_cols=56 Identities=5% Similarity=0.110 Sum_probs=42.4
Q ss_pred HHHHHHhhccCcccCCeEEEeCCCCcHHHHHHHHhCCCeEEEEeCChHHHHHHHHHhHH
Q 026036 64 SFAEWLMHHREWIERRRCIELGSGTGALAIFLRKAMNLDITTSDYNDQEIEDNIAYNST 122 (244)
Q Consensus 64 ~l~~~~~~~~~~~~~~~VLdlG~G~G~~~~~~a~~~~~~v~~~D~~~~~l~~~~~~~~~ 122 (244)
.|.+++.... ..+|..|||.-||+|..+.++.. .+.+.+|+|++++.+ +.+++++.
T Consensus 238 ~L~~rlI~~~-s~~gdiVlDpF~GSGTT~~AA~~-lgR~~Ig~El~~~y~-~~a~~Rl~ 293 (320)
T d1booa_ 238 KLPEFFIRML-TEPDDLVVDIFGGSNTTGLVAER-ESRKWISFEMKPEYV-AASAFRFL 293 (320)
T ss_dssp HHHHHHHHHH-CCTTCEEEETTCTTCHHHHHHHH-TTCEEEEEESCHHHH-HHHHGGGS
T ss_pred HHHHHhhhhc-ccCCCEEEecCCCCcHHHHHHHH-cCCcEEEEeCCHHHH-HHHHHHHH
Confidence 4555555433 24889999999999999987765 499999999999877 66655543
|
| >d1jvba2 c.2.1.1 (A:144-313) Alcohol dehydrogenase {Archaeon Sulfolobus solfataricus [TaxId: 2287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Alcohol dehydrogenase species: Archaeon Sulfolobus solfataricus [TaxId: 2287]
Probab=95.86 E-value=0.0072 Score=43.12 Aligned_cols=104 Identities=15% Similarity=0.141 Sum_probs=62.3
Q ss_pred HHHHHHhhccCcccCCeEEEeCCC--CcHHHHHHHHhC-CCeEEEEeCChHHHHHHHHHhHHhcCCCCCcceEeeecCCC
Q 026036 64 SFAEWLMHHREWIERRRCIELGSG--TGALAIFLRKAM-NLDITTSDYNDQEIEDNIAYNSTTNGITPALPHIKHSWGDA 140 (244)
Q Consensus 64 ~l~~~~~~~~~~~~~~~VLdlG~G--~G~~~~~~a~~~-~~~v~~~D~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 140 (244)
..+..........++.+||=+||+ .|..++.+++.. ..+|+++|.+++.+ +.+++. +.. ...+..+.
T Consensus 14 ~Ta~~al~~~~~~~g~~vlV~G~~G~vG~~~~~~~~~~g~~~V~~~~~~~~~~-~~~~~~----Ga~-----~~i~~~~~ 83 (170)
T d1jvba2 14 ITTYRAVRKASLDPTKTLLVVGAGGGLGTMAVQIAKAVSGATIIGVDVREEAV-EAAKRA----GAD-----YVINASMQ 83 (170)
T ss_dssp HHHHHHHHHTTCCTTCEEEEETTTSHHHHHHHHHHHHHTCCEEEEEESSHHHH-HHHHHH----TCS-----EEEETTTS
T ss_pred HHHHHHHHHhCCCCCCEEEEEeccccceeeeeecccccccccccccccchhhH-HHHHHc----CCc-----eeeccCCc
Confidence 334444455667789999999973 555555555544 57899999998765 555432 221 11111111
Q ss_pred C------C-CCCCCccEEEEcccccCCcChHHHHHHHHHHHHhcCCCCceEee
Q 026036 141 F------P-IPNPDWDLILASDILLYVKQYSNLIKSLSVLLKSYKPKDSQVGH 186 (244)
Q Consensus 141 ~------~-~~~~~fD~I~~~~~l~~~~~~~~l~~~l~~~~~~lk~gG~~~~~ 186 (244)
. . .....||+|+-... .+ .+++...+.++|||++++.
T Consensus 84 ~~~~~~~~~~~~~~~d~vid~~g------~~---~~~~~a~~~l~~~G~iv~~ 127 (170)
T d1jvba2 84 DPLAEIRRITESKGVDAVIDLNN------SE---KTLSVYPKALAKQGKYVMV 127 (170)
T ss_dssp CHHHHHHHHTTTSCEEEEEESCC------CH---HHHTTGGGGEEEEEEEEEC
T ss_pred CHHHHHHHHhhcccchhhhcccc------cc---hHHHhhhhhcccCCEEEEe
Confidence 0 0 12346998886322 22 5566678999999998766
|
| >d1pjca1 c.2.1.4 (A:136-303) L-alanine dehydrogenase {Phormidium lapideum [TaxId: 32060]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Formate/glycerate dehydrogenases, NAD-domain domain: L-alanine dehydrogenase species: Phormidium lapideum [TaxId: 32060]
Probab=95.81 E-value=0.0021 Score=46.00 Aligned_cols=95 Identities=13% Similarity=0.185 Sum_probs=58.0
Q ss_pred cCCeEEEeCCC-CcHHHHHHHHhCCCeEEEEeCChHHHHHHHHHhHHhcCCCCCcceEeeecCCCCCCCCCCccEEEEcc
Q 026036 77 ERRRCIELGSG-TGALAIFLRKAMNLDITTSDYNDQEIEDNIAYNSTTNGITPALPHIKHSWGDAFPIPNPDWDLILASD 155 (244)
Q Consensus 77 ~~~~VLdlG~G-~G~~~~~~a~~~~~~v~~~D~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fD~I~~~~ 155 (244)
+..+|+=||+| .|..++..|...+++|++.|.+.+.+ +.++..... .. .... ...+.+.......|+||+.-
T Consensus 31 ~pa~V~ViGaGvaG~~A~~~A~~lGA~V~~~D~~~~~l-~~l~~~~~~-~~----~~~~-~~~~~l~~~~~~aDivI~aa 103 (168)
T d1pjca1 31 KPGKVVILGGGVVGTEAAKMAVGLGAQVQIFDINVERL-SYLETLFGS-RV----ELLY-SNSAEIETAVAEADLLIGAV 103 (168)
T ss_dssp CCCEEEEECCSHHHHHHHHHHHHTTCEEEEEESCHHHH-HHHHHHHGG-GS----EEEE-CCHHHHHHHHHTCSEEEECC
T ss_pred CCcEEEEECCChHHHHHHHHHhhCCCEEEEEeCcHHHH-HHHHHhhcc-cc----eeeh-hhhhhHHHhhccCcEEEEee
Confidence 56799999999 56778888888899999999999876 444332221 11 1110 00001111123589999976
Q ss_pred cccCCcChHHHHHHHHHHHHhcCCCC
Q 026036 156 ILLYVKQYSNLIKSLSVLLKSYKPKD 181 (244)
Q Consensus 156 ~l~~~~~~~~l~~~l~~~~~~lk~gG 181 (244)
.+ --...+.+. -+++.+.+|||.
T Consensus 104 li-pG~~aP~lI--t~~mv~~Mk~GS 126 (168)
T d1pjca1 104 LV-PGRRAPILV--PASLVEQMRTGS 126 (168)
T ss_dssp CC-TTSSCCCCB--CHHHHTTSCTTC
T ss_pred ec-CCcccCeee--cHHHHhhcCCCc
Confidence 65 333333221 256788899986
|
| >d1o9ga_ c.66.1.29 (A:) rRNA methyltransferase AviRa {Streptomyces viridochromogenes [TaxId: 1938]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: rRNA methyltransferase AviRa domain: rRNA methyltransferase AviRa species: Streptomyces viridochromogenes [TaxId: 1938]
Probab=95.70 E-value=0.017 Score=43.98 Aligned_cols=122 Identities=12% Similarity=-0.032 Sum_probs=69.3
Q ss_pred hHHHHHHHHhhccCcccCCeEEEeCCCCcHHHHHHHHhC-----------------------------------------
Q 026036 61 GTFSFAEWLMHHREWIERRRCIELGSGTGALAIFLRKAM----------------------------------------- 99 (244)
Q Consensus 61 ~~~~l~~~~~~~~~~~~~~~VLdlG~G~G~~~~~~a~~~----------------------------------------- 99 (244)
++..+++.+. ......+..++|-.||+|.+.+.+|...
T Consensus 35 aa~il~~al~-l~~w~~~~~LlDPmCGSGTilIEAAlia~niaPGl~R~f~fe~w~~~~~~~w~~l~~~a~~~~~~~~~~ 113 (249)
T d1o9ga_ 35 ATEIFQRALA-RLPGDGPVTLWDPCCGSGYLLTVLGLLHRRSLRQVIASDVDPAPLELAAKNLALLSPAGLTARELERRE 113 (249)
T ss_dssp HHHHHHHHHH-TSSCCSCEEEEETTCTTSHHHHHHHHHTGGGEEEEEEEESCHHHHHHHHHHHHTTSHHHHHHHHHHHHH
T ss_pred HHHHHHHHhh-hhcCCCCCceeccccCccHHHHHHHHHHhCcCcCcccchhhhcccccCHHHHHHHHHHHHHHHhccccc
Confidence 4555555543 2333345579999999999998776532
Q ss_pred CCeEEEEeCChHHHHHHH---HHhHHhcCCCCCcceEeeecCCCCCC----CCCCccEEEEcccccCCcC-------hHH
Q 026036 100 NLDITTSDYNDQEIEDNI---AYNSTTNGITPALPHIKHSWGDAFPI----PNPDWDLILASDILLYVKQ-------YSN 165 (244)
Q Consensus 100 ~~~v~~~D~~~~~l~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~fD~I~~~~~l~~~~~-------~~~ 165 (244)
..++.+.|+++.++ +.+ +.|+...++...+.....+..+..+. .....++||+|.+. -..- .+.
T Consensus 114 ~~~i~G~D~d~~ai-~~A~~~r~n~~~Agl~~~i~i~~~d~f~~~~~~~~~~~~~~GlIVtNPPY-GERl~~~~~~~~~~ 191 (249)
T d1o9ga_ 114 QSERFGKPSYLEAA-QAARRLRERLTAEGGALPCAIRTADVFDPRALSAVLAGSAPDVVLTDLPY-GERTHWEGQVPGQP 191 (249)
T ss_dssp HHHHHCCHHHHHHH-HHHHHHHHHHHHTTSSCCEEEEECCTTCGGGHHHHHTTCCCSEEEEECCG-GGSSSSSSCCCHHH
T ss_pred cCCccccccCHHHH-HHHHHHHHHHHHcCCCceeeeeecchhccCcchhccCCCCCCEEEeCCCc-cccccccccchHHH
Confidence 01345666666665 444 35777667654444433333222111 13457899998884 3211 123
Q ss_pred HHHHHHHHHHhcCCCCceEee
Q 026036 166 LIKSLSVLLKSYKPKDSQVGH 186 (244)
Q Consensus 166 l~~~l~~~~~~lk~gG~~~~~ 186 (244)
+.++...+.+.+ |+...+++
T Consensus 192 ~~~~~~~l~~~~-p~~s~~~i 211 (249)
T d1o9ga_ 192 VAGLLRSLASAL-PAHAVIAV 211 (249)
T ss_dssp HHHHHHHHHHHS-CTTCEEEE
T ss_pred HHHHHHHHHccC-CCCcEEEE
Confidence 456666777878 44444444
|
| >d1eg2a_ c.66.1.11 (A:) m.RsrI N6 adenosine-specific DNA methyltransferase {Rhodobacter sphaeroides [TaxId: 1063]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Type II DNA methylase domain: m.RsrI N6 adenosine-specific DNA methyltransferase species: Rhodobacter sphaeroides [TaxId: 1063]
Probab=95.66 E-value=0.016 Score=44.41 Aligned_cols=58 Identities=12% Similarity=0.042 Sum_probs=44.6
Q ss_pred HHHHHHHHhhccCcccCCeEEEeCCCCcHHHHHHHHhCCCeEEEEeCChHHHHHHHHHhHH
Q 026036 62 TFSFAEWLMHHREWIERRRCIELGSGTGALAIFLRKAMNLDITTSDYNDQEIEDNIAYNST 122 (244)
Q Consensus 62 ~~~l~~~~~~~~~~~~~~~VLdlG~G~G~~~~~~a~~~~~~v~~~D~~~~~l~~~~~~~~~ 122 (244)
-..|.+++..... .+|..|||--||+|..++++... +.+.+|+|+++..+ +.+++++.
T Consensus 193 P~~L~~~~I~~~s-~~gdiVLDpF~GSGTT~~Aa~~l-gR~~ig~El~~~y~-~~a~~Ri~ 250 (279)
T d1eg2a_ 193 PAAVIERLVRALS-HPGSTVLDFFAGSGVTARVAIQE-GRNSICTDAAPVFK-EYYQKQLT 250 (279)
T ss_dssp CHHHHHHHHHHHS-CTTCEEEETTCTTCHHHHHHHHH-TCEEEEEESSTHHH-HHHHHHHH
T ss_pred chhHHHHHHHhhc-CCCCEEEecCCCCcHHHHHHHHh-CCeEEEEeCCHHHH-HHHHHHHH
Confidence 3456666655432 48899999999999999888665 88999999999876 66665554
|
| >d1zkda1 c.66.1.52 (A:2-366) Hypothetical protein RPA4359 {Rhodopseudomonas palustris [TaxId: 1076]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: RPA4359-like domain: Hypothetical protein RPA4359 species: Rhodopseudomonas palustris [TaxId: 1076]
Probab=95.66 E-value=0.017 Score=46.56 Aligned_cols=50 Identities=20% Similarity=0.277 Sum_probs=34.0
Q ss_pred HHHHHHHHhhc---cCcccCCeEEEeCCCCcHHHHHHHHhC--------CCeEEEEeCChH
Q 026036 62 TFSFAEWLMHH---REWIERRRCIELGSGTGALAIFLRKAM--------NLDITTSDYNDQ 111 (244)
Q Consensus 62 ~~~l~~~~~~~---~~~~~~~~VLdlG~G~G~~~~~~a~~~--------~~~v~~~D~~~~ 111 (244)
+..++.|+... ....+...|+|+|+|+|.++.-+.... ..+++.+|.|+.
T Consensus 61 g~~ia~~~~~~~~~~~~~~~~~ivE~GaG~G~La~dil~~l~~~~~~~~~~~~~~vE~s~~ 121 (365)
T d1zkda1 61 GELLGLWSASVWKAADEPQTLRLIEIGPGRGTMMADALRALRVLPILYQSLSVHLVEINPV 121 (365)
T ss_dssp HHHHHHHHHHHHHHTTCCSSEEEEEECCTTSHHHHHHHHHHTTSHHHHTTEEEEEECCCHH
T ss_pred HHHHHHHHHHHHHHhCCCccceEEecCCcccHHHHhhhhhhcccccccccceEEEeccchh
Confidence 45666666543 222244589999999999886554332 446899999996
|
| >d1f8fa2 c.2.1.1 (A:163-336) Benzyl alcohol dehydrogenase {Acinetobacter calcoaceticus [TaxId: 471]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Benzyl alcohol dehydrogenase species: Acinetobacter calcoaceticus [TaxId: 471]
Probab=95.64 E-value=0.0043 Score=44.66 Aligned_cols=100 Identities=15% Similarity=0.091 Sum_probs=59.8
Q ss_pred hhccCcccCCeEEEeCCC-CcHHHHHHHHhC-CCeEEEEeCChHHHHHHHHHhHHhcCCCCCcceEeeecCCCC----CC
Q 026036 70 MHHREWIERRRCIELGSG-TGALAIFLRKAM-NLDITTSDYNDQEIEDNIAYNSTTNGITPALPHIKHSWGDAF----PI 143 (244)
Q Consensus 70 ~~~~~~~~~~~VLdlG~G-~G~~~~~~a~~~-~~~v~~~D~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~ 143 (244)
.......+|.+||=+||| .|..+..+++.. ...|+.+|.+++.+ +.+++. +.. ..+.....+.. ..
T Consensus 21 ~~~~~~~~g~~VlI~G~G~iG~~~~~~ak~~g~~~v~~~~~~~~k~-~~a~~~----Ga~---~~i~~~~~~~~~~i~~~ 92 (174)
T d1f8fa2 21 INALKVTPASSFVTWGAGAVGLSALLAAKVCGASIIIAVDIVESRL-ELAKQL----GAT---HVINSKTQDPVAAIKEI 92 (174)
T ss_dssp HTTTCCCTTCEEEEESCSHHHHHHHHHHHHHTCSEEEEEESCHHHH-HHHHHH----TCS---EEEETTTSCHHHHHHHH
T ss_pred HHhhCCCCCCEEEEeCCCHHHhhhhhcccccccceeeeeccHHHHH-HHHHHc----CCe---EEEeCCCcCHHHHHHHH
Confidence 444567789999999986 444555555554 55688899998765 555432 221 11111111100 11
Q ss_pred CCCCccEEEEcccccCCcChHHHHHHHHHHHHhcCCCCceEee
Q 026036 144 PNPDWDLILASDILLYVKQYSNLIKSLSVLLKSYKPKDSQVGH 186 (244)
Q Consensus 144 ~~~~fD~I~~~~~l~~~~~~~~l~~~l~~~~~~lk~gG~~~~~ 186 (244)
.++.+|+|+-.-. .+ .+++...+.++|+|++++.
T Consensus 93 t~gg~D~vid~~G------~~---~~~~~~~~~~~~~G~i~~~ 126 (174)
T d1f8fa2 93 TDGGVNFALESTG------SP---EILKQGVDALGILGKIAVV 126 (174)
T ss_dssp TTSCEEEEEECSC------CH---HHHHHHHHTEEEEEEEEEC
T ss_pred cCCCCcEEEEcCC------cH---HHHHHHHhcccCceEEEEE
Confidence 2347998875211 23 5667788999999998775
|
| >d1tt7a2 c.2.1.1 (A:128-294) Hypothetical protein YhfP {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Hypothetical protein YhfP species: Bacillus subtilis [TaxId: 1423]
Probab=95.60 E-value=0.0079 Score=43.03 Aligned_cols=103 Identities=17% Similarity=0.200 Sum_probs=60.7
Q ss_pred HhhccCcccCCeEEEeCC--CCcHHHHHHHHhCCCeEEEEeCChHHHHHHHHHhHHhcCCCCCcceEeeecCCCCCCCCC
Q 026036 69 LMHHREWIERRRCIELGS--GTGALAIFLRKAMNLDITTSDYNDQEIEDNIAYNSTTNGITPALPHIKHSWGDAFPIPNP 146 (244)
Q Consensus 69 ~~~~~~~~~~~~VLdlG~--G~G~~~~~~a~~~~~~v~~~D~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 146 (244)
+.......++.+||=-|+ |.|..++-+|+..+++|+++.-+++.. +.++.. +....+..-...+........+
T Consensus 15 L~~~g~~~~~~~VLV~gaaGgVG~~avQlAk~~Ga~Viat~~s~~k~-~~~~~l----Gad~vi~~~~~~~~~~~~~~~~ 89 (167)
T d1tt7a2 15 LEQNGLSPEKGSVLVTGATGGVGGIAVSMLNKRGYDVVASTGNREAA-DYLKQL----GASEVISREDVYDGTLKALSKQ 89 (167)
T ss_dssp HHHTTCCGGGCCEEEESTTSHHHHHHHHHHHHHTCCEEEEESSSSTH-HHHHHH----TCSEEEEHHHHCSSCCCSSCCC
T ss_pred HHHhcCCCCCCEEEEeCCcchHHHHHHHHHHHcCCceEEEecCHHHH-HHHHhh----cccceEeccchhchhhhcccCC
Confidence 333334445667887764 456677778888899999999987654 444332 2211011101111111222345
Q ss_pred CccEEEEcccccCCcChHHHHHHHHHHHHhcCCCCceEee
Q 026036 147 DWDLILASDILLYVKQYSNLIKSLSVLLKSYKPKDSQVGH 186 (244)
Q Consensus 147 ~fD~I~~~~~l~~~~~~~~l~~~l~~~~~~lk~gG~~~~~ 186 (244)
.+|+|+- ++ .. +.+.+..+.|+|+|++++.
T Consensus 90 gvd~vid--~v-----gg---~~~~~~~~~l~~~G~iv~~ 119 (167)
T d1tt7a2 90 QWQGAVD--PV-----GG---KQLASLLSKIQYGGSVAVS 119 (167)
T ss_dssp CEEEEEE--SC-----CT---HHHHHHHTTEEEEEEEEEC
T ss_pred CceEEEe--cC-----cH---HHHHHHHHHhccCceEEEe
Confidence 7898764 33 12 5677789999999998776
|
| >d2c7pa1 c.66.1.26 (A:1-327) DNA methylase HhaI {Haemophilus haemolyticus [TaxId: 726]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: C5 cytosine-specific DNA methylase, DCM domain: DNA methylase HhaI species: Haemophilus haemolyticus [TaxId: 726]
Probab=95.43 E-value=0.017 Score=45.48 Aligned_cols=95 Identities=16% Similarity=0.167 Sum_probs=57.2
Q ss_pred ccCCeEEEeCCCCcHHHHHHHHhCCCeEEEEeCChHHHHHHHHHhHHhcCCCCCcceEeeecCCCCCCCCCCccEEEEcc
Q 026036 76 IERRRCIELGSGTGALAIFLRKAMNLDITTSDYNDQEIEDNIAYNSTTNGITPALPHIKHSWGDAFPIPNPDWDLILASD 155 (244)
Q Consensus 76 ~~~~~VLdlG~G~G~~~~~~a~~~~~~v~~~D~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fD~I~~~~ 155 (244)
..+.|||||-||.|.++..+.+.+-.-|.++|+++.++ +..+.|-.. .. ..|..+........+|++++..
T Consensus 9 ~~~lrv~~lFsG~Gg~~~gl~~aG~~~v~a~e~d~~a~-~~~~~N~~~-~~-------~~Di~~~~~~~~~~~Dll~ggp 79 (327)
T d2c7pa1 9 LTGLRFIDLFAGLGGFRLALESCGAECVYSNEWDKYAQ-EVYEMNFGE-KP-------EGDITQVNEKTIPDHDILCAGF 79 (327)
T ss_dssp TTTCEEEEETCTTTHHHHHHHHTTCEEEEEECCCHHHH-HHHHHHHSC-CC-------BSCGGGSCGGGSCCCSEEEEEC
T ss_pred CCCCeEEEECccccHHHHHHHHCCCeEEEEEeCCHHHH-HHHHHHCCC-CC-------cCchhcCchhhcceeeeeeccc
Confidence 46789999999999999988766433477799999876 666666421 11 1111111111123589999877
Q ss_pred cccCCc-----------ChHHHHHHHHHHHHhcCCC
Q 026036 156 ILLYVK-----------QYSNLIKSLSVLLKSYKPK 180 (244)
Q Consensus 156 ~l~~~~-----------~~~~l~~~l~~~~~~lk~g 180 (244)
+. ... ....+...+-++.+.++|.
T Consensus 80 PC-q~fS~ag~~~g~~d~r~~l~~~~~~~i~~~kP~ 114 (327)
T d2c7pa1 80 PC-QAFSISGKQKGFEDSRGTLFFDIARIVREKKPK 114 (327)
T ss_dssp CC-TTTCTTSCCCGGGSTTSCHHHHHHHHHHHHCCS
T ss_pred cc-chhhhhhhhcCCcccchhHHHHHHHHHhccCCc
Confidence 64 221 1112444445556667774
|
| >d1qora2 c.2.1.1 (A:113-291) Quinone oxidoreductase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Quinone oxidoreductase species: Escherichia coli [TaxId: 562]
Probab=95.37 E-value=0.0063 Score=43.78 Aligned_cols=95 Identities=11% Similarity=0.041 Sum_probs=60.6
Q ss_pred ccCcccCCeEEEeCCC--CcHHHHHHHHhCCCeEEEEeCChHHHHHHHHHhHHhcCCCCCcceEeeecCCCC--C-----
Q 026036 72 HREWIERRRCIELGSG--TGALAIFLRKAMNLDITTSDYNDQEIEDNIAYNSTTNGITPALPHIKHSWGDAF--P----- 142 (244)
Q Consensus 72 ~~~~~~~~~VLdlG~G--~G~~~~~~a~~~~~~v~~~D~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~----- 142 (244)
.....+|.+||=.|+| .|..++.+|+..+++|++++.+++.. +.+++. +.. ..++..+.- .
T Consensus 23 ~~~l~~g~~Vlv~ga~g~vG~~~iqlak~~Ga~Vi~~~~s~~k~-~~~~~l----Ga~-----~vi~~~~~d~~~~v~~~ 92 (179)
T d1qora2 23 TYEIKPDEQFLFHAAAGGVGLIACQWAKALGAKLIGTVGTAQKA-QSALKA----GAW-----QVINYREEDLVERLKEI 92 (179)
T ss_dssp TSCCCTTCEEEESSTTBHHHHHHHHHHHHHTCEEEEEESSHHHH-HHHHHH----TCS-----EEEETTTSCHHHHHHHH
T ss_pred HhCCCCCCEEEEEccccccchHHHHHHHHhCCeEeecccchHHH-HHHHhc----CCe-----EEEECCCCCHHHHHHHH
Confidence 3456789999999765 56777778888899999999999865 555432 221 112222110 0
Q ss_pred CCCCCccEEEEcccccCCcChHHHHHHHHHHHHhcCCCCceEee
Q 026036 143 IPNPDWDLILASDILLYVKQYSNLIKSLSVLLKSYKPKDSQVGH 186 (244)
Q Consensus 143 ~~~~~fD~I~~~~~l~~~~~~~~l~~~l~~~~~~lk~gG~~~~~ 186 (244)
.....+|+|+.. . . . .++......++++|++++.
T Consensus 93 t~g~g~d~v~d~--~-g----~---~~~~~~~~~l~~~G~~v~~ 126 (179)
T d1qora2 93 TGGKKVRVVYDS--V-G----R---DTWERSLDCLQRRGLMVSF 126 (179)
T ss_dssp TTTCCEEEEEEC--S-C----G---GGHHHHHHTEEEEEEEEEC
T ss_pred hCCCCeEEEEeC--c-c----H---HHHHHHHHHHhcCCeeeec
Confidence 123468987752 2 1 1 3455678899999987665
|
| >d2f1ka2 c.2.1.6 (A:1-165) Prephenate dehydrogenase TyrA {Synechocystis sp. pcc 6803 [TaxId: 1148]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: Prephenate dehydrogenase TyrA species: Synechocystis sp. pcc 6803 [TaxId: 1148]
Probab=95.24 E-value=0.13 Score=35.89 Aligned_cols=83 Identities=8% Similarity=0.077 Sum_probs=45.5
Q ss_pred eEEEeCCCCcHHHHHHHHh---CCCeEEEEeCChHHHHHHHHHhHHhcCCCCCcceEeeecCCCCCCCCCCccEEEEccc
Q 026036 80 RCIELGSGTGALAIFLRKA---MNLDITTSDYNDQEIEDNIAYNSTTNGITPALPHIKHSWGDAFPIPNPDWDLILASDI 156 (244)
Q Consensus 80 ~VLdlG~G~G~~~~~~a~~---~~~~v~~~D~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fD~I~~~~~ 156 (244)
+|.=||+| .+|..+|+. .+.+|++.|.+++.+ +.++++ +. +... . +... .....|+|+.+-.
T Consensus 2 kI~iIG~G--~mG~~lA~~l~~~g~~V~~~d~~~~~~-~~a~~~----~~---~~~~-~---~~~~-~~~~~DiIilavp 66 (165)
T d2f1ka2 2 KIGVVGLG--LIGASLAGDLRRRGHYLIGVSRQQSTC-EKAVER----QL---VDEA-G---QDLS-LLQTAKIIFLCTP 66 (165)
T ss_dssp EEEEECCS--HHHHHHHHHHHHTTCEEEEECSCHHHH-HHHHHT----TS---CSEE-E---SCGG-GGTTCSEEEECSC
T ss_pred EEEEEeec--HHHHHHHHHHHHCCCEEEEEECCchHH-HHHHHh----hc---ccee-e---eecc-cccccccccccCc
Confidence 45556664 444333322 378999999998765 433321 21 0111 0 1111 1235788886432
Q ss_pred ccCCcChHHHHHHHHHHHHhcCCCCce
Q 026036 157 LLYVKQYSNLIKSLSVLLKSYKPKDSQ 183 (244)
Q Consensus 157 l~~~~~~~~l~~~l~~~~~~lk~gG~~ 183 (244)
.....+.++++...++++..+
T Consensus 67 ------~~~~~~vl~~l~~~l~~~~iv 87 (165)
T d2f1ka2 67 ------IQLILPTLEKLIPHLSPTAIV 87 (165)
T ss_dssp ------HHHHHHHHHHHGGGSCTTCEE
T ss_pred ------Hhhhhhhhhhhhhhcccccce
Confidence 345568888888888777643
|
| >d1pqwa_ c.2.1.1 (A:) Putative enoyl reductase domain of polyketide synthase {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Putative enoyl reductase domain of polyketide synthase species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=95.21 E-value=0.0053 Score=44.36 Aligned_cols=96 Identities=15% Similarity=0.158 Sum_probs=60.6
Q ss_pred hccCcccCCeEEEeCC--CCcHHHHHHHHhCCCeEEEEeCChHHHHHHHHHhHHhcCCCCCcceEeeecCCC-C-C----
Q 026036 71 HHREWIERRRCIELGS--GTGALAIFLRKAMNLDITTSDYNDQEIEDNIAYNSTTNGITPALPHIKHSWGDA-F-P---- 142 (244)
Q Consensus 71 ~~~~~~~~~~VLdlG~--G~G~~~~~~a~~~~~~v~~~D~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~-~-~---- 142 (244)
+...+.+|.+||=.|+ |.|..++-+++..+++|++++.+++.. +.+++ .+.. . .++..+. . .
T Consensus 19 ~~~~~~~g~~VlI~ga~g~vG~~~iqla~~~g~~vi~~~~~~~~~-~~l~~----~Ga~----~-vi~~~~~~~~~~v~~ 88 (183)
T d1pqwa_ 19 EVGRLSPGERVLIHSATGGVGMAAVSIAKMIGARIYTTAGSDAKR-EMLSR----LGVE----Y-VGDSRSVDFADEILE 88 (183)
T ss_dssp TTSCCCTTCEEEETTTTSHHHHHHHHHHHHHTCEEEEEESSHHHH-HHHHT----TCCS----E-EEETTCSTHHHHHHH
T ss_pred HHhCCCCCCEEEEECCCCCcccccchhhccccccceeeecccccc-ccccc----cccc----c-cccCCccCHHHHHHH
Confidence 4445678899999873 456667777777799999999887654 54442 2331 1 1222121 0 0
Q ss_pred -CCCCCccEEEEcccccCCcChHHHHHHHHHHHHhcCCCCceEee
Q 026036 143 -IPNPDWDLILASDILLYVKQYSNLIKSLSVLLKSYKPKDSQVGH 186 (244)
Q Consensus 143 -~~~~~fD~I~~~~~l~~~~~~~~l~~~l~~~~~~lk~gG~~~~~ 186 (244)
.....+|+|+. +. . . +.++.+.+.|+++|+++..
T Consensus 89 ~t~~~g~d~v~d--~~---g--~---~~~~~~~~~l~~~G~~v~~ 123 (183)
T d1pqwa_ 89 LTDGYGVDVVLN--SL---A--G---EAIQRGVQILAPGGRFIEL 123 (183)
T ss_dssp HTTTCCEEEEEE--CC---C--T---HHHHHHHHTEEEEEEEEEC
T ss_pred HhCCCCEEEEEe--cc---c--c---hHHHHHHHHhcCCCEEEEE
Confidence 12347999986 33 1 2 4566778999999998775
|
| >d1v3va2 c.2.1.1 (A:113-294) Leukotriene b4 12-hydroxydehydrogenase/prostaglandin 15-keto reductase {Guinea pig (Cavia porcellus) [TaxId: 10141]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Leukotriene b4 12-hydroxydehydrogenase/prostaglandin 15-keto reductase species: Guinea pig (Cavia porcellus) [TaxId: 10141]
Probab=95.11 E-value=0.044 Score=39.31 Aligned_cols=96 Identities=9% Similarity=0.046 Sum_probs=62.4
Q ss_pred hccCcccCCeEEEeCCC--CcHHHHHHHHhCCCeEEEEeCChHHHHHHHHHhHHhcCCCCCcceEeeecCCCCC------
Q 026036 71 HHREWIERRRCIELGSG--TGALAIFLRKAMNLDITTSDYNDQEIEDNIAYNSTTNGITPALPHIKHSWGDAFP------ 142 (244)
Q Consensus 71 ~~~~~~~~~~VLdlG~G--~G~~~~~~a~~~~~~v~~~D~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------ 142 (244)
+.....+|.+||=.|++ .|..++.+++..+++|++++-+++.. +.++.. +.. ..++..+...
T Consensus 23 ~~~~v~~G~~VlV~ga~ggvG~~aiqlak~~Ga~vi~~~~~~~~~-~~~~~~----Ga~-----~vi~~~~~~~~~~~~~ 92 (182)
T d1v3va2 23 EVCGVKGGETVLVSAAAGAVGSVVGQIAKLKGCKVVGAAGSDEKI-AYLKQI----GFD-----AAFNYKTVNSLEEALK 92 (182)
T ss_dssp TTTCCCSSCEEEESSTTSHHHHHHHHHHHHTTCEEEEEESSHHHH-HHHHHT----TCS-----EEEETTSCSCHHHHHH
T ss_pred HHhCCCCCCEEEEEeCCCchhHHHHHHHHccCCEEEEeCCCHHHH-HHHHhh----hhh-----hhcccccccHHHHHHH
Confidence 44567789999988875 45666778888899999999988764 444432 221 1112211111
Q ss_pred -CCCCCccEEEEcccccCCcChHHHHHHHHHHHHhcCCCCceEee
Q 026036 143 -IPNPDWDLILASDILLYVKQYSNLIKSLSVLLKSYKPKDSQVGH 186 (244)
Q Consensus 143 -~~~~~fD~I~~~~~l~~~~~~~~l~~~l~~~~~~lk~gG~~~~~ 186 (244)
.....+|+|+- ++ -. +.++...+.++++|++++.
T Consensus 93 ~~~~~Gvd~v~D--~v-----G~---~~~~~~~~~l~~~G~~v~~ 127 (182)
T d1v3va2 93 KASPDGYDCYFD--NV-----GG---EFLNTVLSQMKDFGKIAIC 127 (182)
T ss_dssp HHCTTCEEEEEE--SS-----CH---HHHHHHGGGEEEEEEEEEC
T ss_pred HhhcCCCceeEE--ec-----Cc---hhhhhhhhhccCCCeEEee
Confidence 12346898874 33 12 5677889999999988775
|
| >d2g5ca2 c.2.1.6 (A:30-200) Prephenate dehydrogenase TyrA {Aquifex aeolicus [TaxId: 63363]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: Prephenate dehydrogenase TyrA species: Aquifex aeolicus [TaxId: 63363]
Probab=95.10 E-value=0.29 Score=34.12 Aligned_cols=87 Identities=17% Similarity=0.148 Sum_probs=47.9
Q ss_pred eEEEeCCCC-c-HHHHHHHHhC-CCeEEEEeCChHHHHHHHHHhHHhcCCCCCcceEeeecCCCCCCCCCCccEEEEccc
Q 026036 80 RCIELGSGT-G-ALAIFLRKAM-NLDITTSDYNDQEIEDNIAYNSTTNGITPALPHIKHSWGDAFPIPNPDWDLILASDI 156 (244)
Q Consensus 80 ~VLdlG~G~-G-~~~~~~a~~~-~~~v~~~D~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fD~I~~~~~ 156 (244)
+|+=+|||. | .++..+.+.+ ..+|++.|.+++.+ +.+++. +.. ..... +.........|+|+.+-.
T Consensus 3 ~I~IIG~G~mG~sla~~L~~~g~~~~I~~~D~~~~~~-~~a~~~----~~~---~~~~~---~~~~~~~~~~dlIila~p 71 (171)
T d2g5ca2 3 NVLIVGVGFMGGSFAKSLRRSGFKGKIYGYDINPESI-SKAVDL----GII---DEGTT---SIAKVEDFSPDFVMLSSP 71 (171)
T ss_dssp EEEEESCSHHHHHHHHHHHHTTCCSEEEEECSCHHHH-HHHHHT----TSC---SEEES---CGGGGGGTCCSEEEECSC
T ss_pred EEEEEccCHHHHHHHHHHHhcCCCeEEEEEECChHHH-HHHHHh----hcc---hhhhh---hhhhhhccccccccccCC
Confidence 567788763 2 2333444443 45899999998865 444432 110 11100 111111235788887544
Q ss_pred ccCCcChHHHHHHHHHHHHhcCCCCce
Q 026036 157 LLYVKQYSNLIKSLSVLLKSYKPKDSQ 183 (244)
Q Consensus 157 l~~~~~~~~l~~~l~~~~~~lk~gG~~ 183 (244)
. ......+.++...++++..+
T Consensus 72 ~------~~~~~vl~~l~~~~~~~~ii 92 (171)
T d2g5ca2 72 V------RTFREIAKKLSYILSEDATV 92 (171)
T ss_dssp H------HHHHHHHHHHHHHSCTTCEE
T ss_pred c------hhhhhhhhhhhccccccccc
Confidence 3 44557788888888876543
|
| >d1dcta_ c.66.1.26 (A:) DNA methylase HaeIII {Haemophilus aegyptius [TaxId: 197575]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: C5 cytosine-specific DNA methylase, DCM domain: DNA methylase HaeIII species: Haemophilus aegyptius [TaxId: 197575]
Probab=95.03 E-value=0.024 Score=44.33 Aligned_cols=71 Identities=23% Similarity=0.165 Sum_probs=45.8
Q ss_pred CeEEEeCCCCcHHHHHHHHhCCCeEEEEeCChHHHHHHHHHhHHhcCCCCCcceEeeecCCCCCCCCCCccEEEEcccc
Q 026036 79 RRCIELGSGTGALAIFLRKAMNLDITTSDYNDQEIEDNIAYNSTTNGITPALPHIKHSWGDAFPIPNPDWDLILASDIL 157 (244)
Q Consensus 79 ~~VLdlG~G~G~~~~~~a~~~~~~v~~~D~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fD~I~~~~~l 157 (244)
.+||||-||.|.+++.+...+..-+.++|+++.+. +..+.|-. . ..+..+..+......+..|++++..+.
T Consensus 1 mk~~~lF~G~Gg~~~gl~~aG~~~~~a~e~d~~a~-~~~~~N~~-----~--~~~~~Di~~~~~~~~~~~dll~~g~PC 71 (324)
T d1dcta_ 1 MNLISLFSGAGGLDLGFQKAGFRIICANEYDKSIW-KTYESNHS-----A--KLIKGDISKISSDEFPKCDGIIGGPPC 71 (324)
T ss_dssp CEEEEESCSSCHHHHHHHHHTCEEEEEEECCHHHH-HHHHHHCC-----S--EEEESCTTTSCGGGSCCCSEEEECCCC
T ss_pred CeEEEeCcCcCHHHHHHHHCCCEEEEEEeCCHHHH-HHHHHHCC-----C--CCccCChhhCCHhHcccccEEeecccc
Confidence 37999999999999888766544477999999876 66565532 1 122223322211222468999887664
|
| >d1m6ex_ c.66.1.35 (X:) Salicylic acid carboxyl methyltransferase (SAMT) {Clarkia breweri [TaxId: 36903]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Salicylic acid carboxyl methyltransferase (SAMT) domain: Salicylic acid carboxyl methyltransferase (SAMT) species: Clarkia breweri [TaxId: 36903]
Probab=94.93 E-value=0.035 Score=44.54 Aligned_cols=111 Identities=15% Similarity=0.110 Sum_probs=62.8
Q ss_pred CeEEEeCCCCcHHHHHHH-------H-h------C---CCeEEEEeCChHHHHHHHHHhHHhcCCCCCcceEeeecCC--
Q 026036 79 RRCIELGSGTGALAIFLR-------K-A------M---NLDITTSDYNDQEIEDNIAYNSTTNGITPALPHIKHSWGD-- 139 (244)
Q Consensus 79 ~~VLdlG~G~G~~~~~~a-------~-~------~---~~~v~~~D~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~-- 139 (244)
-+|.|+||.+|..++.+. + . . ..+|...|+..+.. ..+=+++....-....-.+....+.
T Consensus 53 ~~IADlGCS~G~Ntl~~v~~iI~~i~~~~~~~~~~~~pe~qvf~nDLP~NDF-NtLF~~L~~~~~~~~~~f~~gvpGSFY 131 (359)
T d1m6ex_ 53 LAIADLGCSSGPNALFAVTELIKTVEELRKKMGRENSPEYQIFLNDLPGNDF-NAIFRSLPIENDVDGVCFINGVPGSFY 131 (359)
T ss_dssp ECCEEESCCSSTTTTTGGGTTHHHHHHHHHSSSCSSCCEEEEEEEECTTSCH-HHHHTTTTTSCSCTTCEEEEEEESCSS
T ss_pred eEEEEeCCCCCccHHHHHHHHHHHHHHHHHhcCCCCCCeEEEEeCCCCcchH-HHHHHhccccccCCCCeEEEecCCchh
Confidence 579999999997764221 1 0 0 34699999987644 2222222111110000112212221
Q ss_pred CCCCCCCCccEEEEcccccCCcC-------------------------------hHHHHHHHHHHHHhcCCCCceEeecc
Q 026036 140 AFPIPNPDWDLILASDILLYVKQ-------------------------------YSNLIKSLSVLLKSYKPKDSQVGHLT 188 (244)
Q Consensus 140 ~~~~~~~~fD~I~~~~~l~~~~~-------------------------------~~~l~~~l~~~~~~lk~gG~~~~~~~ 188 (244)
.--++.++.++++++.++ ||.+ ..++...|+.=++-|+|||+++++..
T Consensus 132 ~rLfP~~Slh~~~Ss~al-HWLS~vP~~l~~n~~~i~~~~~~~~~v~~ay~~Qf~~D~~~FL~~Ra~ELv~GG~mvl~~~ 210 (359)
T d1m6ex_ 132 GRLFPRNTLHFIHSSYSL-MWLSQVPIGIESNKGNIYMANTCPQSVLNAYYKQFQEDHALFLRCRAQEVVPGGRMVLTIL 210 (359)
T ss_dssp SCCSCTTCBSCEEEESCT-TBCSSCCSCCCCCTTTTSSCSSSCCTTSCCSHHHHHHHHHHHHHHHHHHBCTTCEEEEEEE
T ss_pred hhcCCCCceEEeeehhhh-hhhhcCCccccCCCCcEEEcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcEEEEEEe
Confidence 123456788999988887 4421 12455666666788999999999855
Q ss_pred ccc
Q 026036 189 KNE 191 (244)
Q Consensus 189 ~~~ 191 (244)
..+
T Consensus 211 gr~ 213 (359)
T d1m6ex_ 211 GRR 213 (359)
T ss_dssp ECS
T ss_pred ccC
Confidence 543
|
| >d1h2ba2 c.2.1.1 (A:155-326) Alcohol dehydrogenase {Archaeon Aeropyrum pernix [TaxId: 56636]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Alcohol dehydrogenase species: Archaeon Aeropyrum pernix [TaxId: 56636]
Probab=94.72 E-value=0.046 Score=38.77 Aligned_cols=94 Identities=9% Similarity=-0.034 Sum_probs=57.1
Q ss_pred CcccCCeEEEeCCC-CcHHHHHHHHh-CCCeEEEEeCChHHHHHHHHHhHHhcCCCCCcceEeeecCCCC-----C-CCC
Q 026036 74 EWIERRRCIELGSG-TGALAIFLRKA-MNLDITTSDYNDQEIEDNIAYNSTTNGITPALPHIKHSWGDAF-----P-IPN 145 (244)
Q Consensus 74 ~~~~~~~VLdlG~G-~G~~~~~~a~~-~~~~v~~~D~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~-~~~ 145 (244)
...+|.+||=+|+| .|..+..+++. ++..|+++|.+++.+ +.+++. +.. ..++..+.. . ...
T Consensus 29 ~~~~g~~vli~GaG~vG~~~~~~a~~~g~~~vv~~~~~~~k~-~~~~~~----ga~-----~~i~~~~~~~~~~~~~~~~ 98 (172)
T d1h2ba2 29 TLYPGAYVAIVGVGGLGHIAVQLLKVMTPATVIALDVKEEKL-KLAERL----GAD-----HVVDARRDPVKQVMELTRG 98 (172)
T ss_dssp TCCTTCEEEEECCSHHHHHHHHHHHHHCCCEEEEEESSHHHH-HHHHHT----TCS-----EEEETTSCHHHHHHHHTTT
T ss_pred ccCCCCEEEEeCCChHHHHHHHHHHhhcCcccccccchhHHH-HHHhhc----ccc-----eeecCcccHHHHHHHhhCC
Confidence 35678999999986 44555555554 457899999998765 555432 220 111111110 0 112
Q ss_pred CCccEEEEcccccCCcChHHHHHHHHHHHHhcCCCCceEee
Q 026036 146 PDWDLILASDILLYVKQYSNLIKSLSVLLKSYKPKDSQVGH 186 (244)
Q Consensus 146 ~~fD~I~~~~~l~~~~~~~~l~~~l~~~~~~lk~gG~~~~~ 186 (244)
..+|+|+-.-. .. .+++...+.+++||++++.
T Consensus 99 ~g~d~vid~~g------~~---~~~~~a~~~l~~~G~iv~~ 130 (172)
T d1h2ba2 99 RGVNVAMDFVG------SQ---ATVDYTPYLLGRMGRLIIV 130 (172)
T ss_dssp CCEEEEEESSC------CH---HHHHHGGGGEEEEEEEEEC
T ss_pred CCceEEEEecC------cc---hHHHHHHHHHhCCCEEEEE
Confidence 35898875322 22 4577788999999998876
|
| >d1l7da1 c.2.1.4 (A:144-326) Nicotinamide nucleotide transhydrogenase dI component {Rhodospirillum rubrum [TaxId: 1085]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Formate/glycerate dehydrogenases, NAD-domain domain: Nicotinamide nucleotide transhydrogenase dI component species: Rhodospirillum rubrum [TaxId: 1085]
Probab=94.65 E-value=0.031 Score=40.29 Aligned_cols=41 Identities=20% Similarity=0.314 Sum_probs=33.0
Q ss_pred cCCeEEEeCCC-CcHHHHHHHHhCCCeEEEEeCChHHHHHHHH
Q 026036 77 ERRRCIELGSG-TGALAIFLRKAMNLDITTSDYNDQEIEDNIA 118 (244)
Q Consensus 77 ~~~~VLdlG~G-~G~~~~~~a~~~~~~v~~~D~~~~~l~~~~~ 118 (244)
+..+|+=||+| .|..+...|...+++|++.|.++..+ +.++
T Consensus 28 ~pa~VvViGaGvaG~~Aa~~A~~lGA~V~v~D~~~~~~-~~l~ 69 (183)
T d1l7da1 28 PPARVLVFGVGVAGLQAIATAKRLGAVVMATDVRAATK-EQVE 69 (183)
T ss_dssp CCCEEEEECCSHHHHHHHHHHHHTTCEEEEECSCSTTH-HHHH
T ss_pred CCcEEEEEcCcHHHHHHHHHHHHcCCEEEEEeccHHHH-HHHH
Confidence 56799999999 46667888888899999999998765 4443
|
| >d1o89a2 c.2.1.1 (A:116-292) Hypothetical protein YhdH {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Hypothetical protein YhdH species: Escherichia coli [TaxId: 562]
Probab=94.29 E-value=0.074 Score=38.06 Aligned_cols=94 Identities=13% Similarity=0.166 Sum_probs=56.8
Q ss_pred cccCCeEEEeCC--CCcHHHHHHHHhCCCeEEEEeCChHHHHHHHHHhHHhcCCCCCcceEeeecCCC-CCCCCCCccEE
Q 026036 75 WIERRRCIELGS--GTGALAIFLRKAMNLDITTSDYNDQEIEDNIAYNSTTNGITPALPHIKHSWGDA-FPIPNPDWDLI 151 (244)
Q Consensus 75 ~~~~~~VLdlG~--G~G~~~~~~a~~~~~~v~~~D~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~fD~I 151 (244)
..++.+||=.|+ |.|..++-+|+..+++|+++.-+++.. +.++.. +.. ..+..+..+. .......+|.|
T Consensus 29 ~~~~~~vlV~gasGGVG~~aiQlAk~~Ga~Via~~~~~~k~-~~~~~l----Gad---~vi~~~~~~~~~~l~~~~~~~v 100 (177)
T d1o89a2 29 RPQDGEIVVTGASGGVGSTAVALLHKLGYQVVAVSGRESTH-EYLKSL----GAS---RVLPRDEFAESRPLEKQVWAGA 100 (177)
T ss_dssp CGGGCEEEESSTTSHHHHHHHHHHHHTTCCEEEEESCGGGH-HHHHHH----TEE---EEEEGGGSSSCCSSCCCCEEEE
T ss_pred CCCCCcEEEEEccccchHHHHHHHHHcCCCeEEEecchhHH-HHHHhh----ccc---cccccccHHHHHHHHhhcCCee
Confidence 334457876664 355667778888899999999998764 444432 110 0111111111 11223467887
Q ss_pred EEcccccCCcChHHHHHHHHHHHHhcCCCCceEee
Q 026036 152 LASDILLYVKQYSNLIKSLSVLLKSYKPKDSQVGH 186 (244)
Q Consensus 152 ~~~~~l~~~~~~~~l~~~l~~~~~~lk~gG~~~~~ 186 (244)
+ |++ .. .++....+.++++|+++..
T Consensus 101 v--D~V-----gg---~~~~~~l~~l~~~Griv~~ 125 (177)
T d1o89a2 101 I--DTV-----GD---KVLAKVLAQMNYGGCVAAC 125 (177)
T ss_dssp E--ESS-----CH---HHHHHHHHTEEEEEEEEEC
T ss_pred E--EEc-----ch---HHHHHHHHHhccccceEee
Confidence 5 555 22 5677888999999998776
|
| >d1gu7a2 c.2.1.1 (A:161-349) 2,4-dienoyl-CoA reductase {Yeast (Candida tropicalis) [TaxId: 5482]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: 2,4-dienoyl-CoA reductase species: Yeast (Candida tropicalis) [TaxId: 5482]
Probab=93.55 E-value=0.077 Score=38.22 Aligned_cols=104 Identities=13% Similarity=0.093 Sum_probs=53.4
Q ss_pred ccCcccCCeEEEeCCCC---cHHHHHHHHhCCCeEEEEeCChHHHHHHHHHhHHhcCCCCCcceEeeecCCCC-------
Q 026036 72 HREWIERRRCIELGSGT---GALAIFLRKAMNLDITTSDYNDQEIEDNIAYNSTTNGITPALPHIKHSWGDAF------- 141 (244)
Q Consensus 72 ~~~~~~~~~VLdlG~G~---G~~~~~~a~~~~~~v~~~D~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~------- 141 (244)
.....+|.+||=+.+|+ |..++.+|+..+++|+++--+.+.. +.....+...+....+..-..++.+..
T Consensus 23 ~~~~~~g~~vli~~ga~g~vG~~aiqlAk~~Ga~vI~~v~~~~~~-~~~~~~~~~lGad~vi~~~~~~~~~~~~~v~~~~ 101 (189)
T d1gu7a2 23 YVKLTPGKDWFIQNGGTSAVGKYASQIGKLLNFNSISVIRDRPNL-DEVVASLKELGATQVITEDQNNSREFGPTIKEWI 101 (189)
T ss_dssp SSCCCTTTCEEEESCTTSHHHHHHHHHHHHHTCEEEEEECCCTTH-HHHHHHHHHHTCSEEEEHHHHHCGGGHHHHHHHH
T ss_pred HhCCCCCCEEEEEeCCCchHHHHHHHHHhhcCCeEEEEEeccccc-chHHhhhhhccccEEEeccccchhHHHHHHHHHH
Confidence 34567888888874443 4556667777799988875443222 222222222233110000000110100
Q ss_pred CCCCCCccEEEEcccccCCcChHHHHHHHHHHHHhcCCCCceEee
Q 026036 142 PIPNPDWDLILASDILLYVKQYSNLIKSLSVLLKSYKPKDSQVGH 186 (244)
Q Consensus 142 ~~~~~~fD~I~~~~~l~~~~~~~~l~~~l~~~~~~lk~gG~~~~~ 186 (244)
......+|+|+ |++ .. ..+....+.|+|+|+++..
T Consensus 102 ~~~g~~vdvv~--D~v-----g~---~~~~~~~~~l~~~G~~v~~ 136 (189)
T d1gu7a2 102 KQSGGEAKLAL--NCV-----GG---KSSTGIARKLNNNGLMLTY 136 (189)
T ss_dssp HHHTCCEEEEE--ESS-----CH---HHHHHHHHTSCTTCEEEEC
T ss_pred hhccCCceEEE--ECC-----Cc---chhhhhhhhhcCCcEEEEE
Confidence 00124578877 444 12 3456678999999997754
|
| >d1xg5a_ c.2.1.2 (A:) Putative dehydrogenase ARPG836 (MGC4172) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Putative dehydrogenase ARPG836 (MGC4172) species: Human (Homo sapiens) [TaxId: 9606]
Probab=93.23 E-value=0.31 Score=36.77 Aligned_cols=81 Identities=14% Similarity=0.182 Sum_probs=49.1
Q ss_pred cccCCeEEEeCCCCcHHHHHHHHhC---CCeEEEEeCChHHHHHHHHHhHHhcCCCCCcceEeeecCCCCC---------
Q 026036 75 WIERRRCIELGSGTGALAIFLRKAM---NLDITTSDYNDQEIEDNIAYNSTTNGITPALPHIKHSWGDAFP--------- 142 (244)
Q Consensus 75 ~~~~~~VLdlG~G~G~~~~~~a~~~---~~~v~~~D~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------- 142 (244)
.++|+.||=-|++.|+ +..+++.+ +.+|+.+|.+++.+ +.+.+.+...+.+.++..+..|..+...
T Consensus 7 ~lk~Kv~lITGas~GI-G~aiA~~la~~G~~Vv~~~r~~~~l-~~~~~~l~~~~~~~~~~~~~~Dls~~~~v~~~v~~~~ 84 (257)
T d1xg5a_ 7 RWRDRLALVTGASGGI-GAAVARALVQQGLKVVGCARTVGNI-EELAAECKSAGYPGTLIPYRCDLSNEEDILSMFSAIR 84 (257)
T ss_dssp GGTTCEEEEESTTSHH-HHHHHHHHHHTTCEEEEEESCHHHH-HHHHHHHHHTTCSSEEEEEECCTTCHHHHHHHHHHHH
T ss_pred CCCCCEEEEeCCCCHH-HHHHHHHHHHCCCEEEEEECCHHHH-HHHHHHHHhcCCCceEEEEEccCCCHHHHHHHHHHHH
Confidence 3678899999987764 33333332 88999999998877 4444444443333344455555554211
Q ss_pred CCCCCccEEEEcccc
Q 026036 143 IPNPDWDLILASDIL 157 (244)
Q Consensus 143 ~~~~~fD~I~~~~~l 157 (244)
...++.|++|.+-..
T Consensus 85 ~~~g~iD~lVnnAg~ 99 (257)
T d1xg5a_ 85 SQHSGVDICINNAGL 99 (257)
T ss_dssp HHHCCCSEEEECCCC
T ss_pred HhcCCCCEEEecccc
Confidence 012568988876655
|
| >d1d1ta2 c.2.1.1 (A:163-338) Alcohol dehydrogenase {Human (Homo sapiens), different isozymes [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Alcohol dehydrogenase species: Human (Homo sapiens), different isozymes [TaxId: 9606]
Probab=93.10 E-value=0.088 Score=37.53 Aligned_cols=50 Identities=18% Similarity=0.238 Sum_probs=37.3
Q ss_pred hhccCcccCCeEEEeCCC-CcHHHHHHHHhCC-CeEEEEeCChHHHHHHHHHh
Q 026036 70 MHHREWIERRRCIELGSG-TGALAIFLRKAMN-LDITTSDYNDQEIEDNIAYN 120 (244)
Q Consensus 70 ~~~~~~~~~~~VLdlG~G-~G~~~~~~a~~~~-~~v~~~D~~~~~l~~~~~~~ 120 (244)
.......+|..|+=+||| .|..++.+++..+ .+|+++|.+++.+ +.+++.
T Consensus 22 ~~~~~~~~g~tVlI~G~GgvGl~ai~~ak~~G~~~Vi~vd~~~~kl-~~Ak~~ 73 (176)
T d1d1ta2 22 VKTGKVKPGSTCVVFGLGGVGLSVIMGCKSAGASRIIGIDLNKDKF-EKAMAV 73 (176)
T ss_dssp HTTSCCCTTCEEEEECCSHHHHHHHHHHHHTTCSEEEEECSCGGGH-HHHHHH
T ss_pred HHhhCCCCCCEEEEECCCchhHHHHHHHHHcCCceEEEecCcHHHH-HHHHhc
Confidence 344557789999999996 5566677777665 6899999999876 655543
|
| >d2jhfa2 c.2.1.1 (A:164-339) Alcohol dehydrogenase {Horse (Equus caballus) [TaxId: 9796]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Alcohol dehydrogenase species: Horse (Equus caballus) [TaxId: 9796]
Probab=93.05 E-value=0.79 Score=31.96 Aligned_cols=100 Identities=15% Similarity=0.087 Sum_probs=56.5
Q ss_pred hhccCcccCCeEEEeCCCC-cHHHHHHHHhC-CCeEEEEeCChHHHHHHHHHhHHhcCCCCCcceEeeecC-CCC-----
Q 026036 70 MHHREWIERRRCIELGSGT-GALAIFLRKAM-NLDITTSDYNDQEIEDNIAYNSTTNGITPALPHIKHSWG-DAF----- 141 (244)
Q Consensus 70 ~~~~~~~~~~~VLdlG~G~-G~~~~~~a~~~-~~~v~~~D~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~-~~~----- 141 (244)
.....+.+|.+||=+|+|- |..+..+++.. +.+|+++|.+++.. +.+++. +.. ..+..... +..
T Consensus 21 ~~~~~vk~GdtVlV~GaGG~G~~~~~~~~~~g~~~Vi~~~~~~~k~-~~a~~~----Ga~---~~i~~~~~~~~~~~~~~ 92 (176)
T d2jhfa2 21 VKVAKVTQGSTCAVFGLGGVGLSVIMGCKAAGAARIIGVDINKDKF-AKAKEV----GAT---ECVNPQDYKKPIQEVLT 92 (176)
T ss_dssp HTTTCCCTTCEEEEECCSHHHHHHHHHHHHTTCSEEEEECSCGGGH-HHHHHT----TCS---EEECGGGCSSCHHHHHH
T ss_pred HHhhCCCCCCEEEEECCCCcHHHHHHHHHHcCCceEEeecCcHHHH-HHHHHh----CCe---eEEecCCchhHHHHHHH
Confidence 3445678999999999963 34444555554 57999999999765 555443 221 01110000 110
Q ss_pred CCCCCCccEEEEcccccCCcChHHHHHHHHHHHHhcCCCCceEee
Q 026036 142 PIPNPDWDLILASDILLYVKQYSNLIKSLSVLLKSYKPKDSQVGH 186 (244)
Q Consensus 142 ~~~~~~fD~I~~~~~l~~~~~~~~l~~~l~~~~~~lk~gG~~~~~ 186 (244)
....+.+|+|+-.-.. + .+++.....++++|..++.
T Consensus 93 ~~~~~G~D~vid~~G~------~---~~~~~a~~~~~~~~g~~~~ 128 (176)
T d2jhfa2 93 EMSNGGVDFSFEVIGR------L---DTMVTALSCCQEAYGVSVI 128 (176)
T ss_dssp HHTTSCBSEEEECSCC------H---HHHHHHHHHBCTTTCEEEE
T ss_pred HHhcCCCCEEEecCCc------h---hHHHHHHHHHhcCCcceEE
Confidence 0123468988763322 2 4455567778886544444
|
| >d1p0fa2 c.2.1.1 (A:1164-1337) Alcohol dehydrogenase {Frog (Rana perezi) [TaxId: 8403]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Alcohol dehydrogenase species: Frog (Rana perezi) [TaxId: 8403]
Probab=91.34 E-value=0.15 Score=36.09 Aligned_cols=100 Identities=17% Similarity=0.052 Sum_probs=57.7
Q ss_pred hhccCcccCCeEEEeCCC-CcHHHHHHHHhC-CCeEEEEeCChHHHHHHHHHhHHhcCCCCCcceEeeecCCCC------
Q 026036 70 MHHREWIERRRCIELGSG-TGALAIFLRKAM-NLDITTSDYNDQEIEDNIAYNSTTNGITPALPHIKHSWGDAF------ 141 (244)
Q Consensus 70 ~~~~~~~~~~~VLdlG~G-~G~~~~~~a~~~-~~~v~~~D~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~------ 141 (244)
.+.....+|.+||=+||| .|..++.+++.. ..+|+++|.+++.+ +.+++. +.. ..+.....+..
T Consensus 20 ~~~a~~~~G~~VlV~GaGgvGl~a~~~ak~~G~~~Vi~~d~~~~kl-~~a~~l----Ga~---~~i~~~~~d~~~~~~~~ 91 (174)
T d1p0fa2 20 VNTAKVTPGSTCAVFGLGGVGFSAIVGCKAAGASRIIGVGTHKDKF-PKAIEL----GAT---ECLNPKDYDKPIYEVIC 91 (174)
T ss_dssp HTTTCCCTTCEEEEECCSHHHHHHHHHHHHHTCSEEEEECSCGGGH-HHHHHT----TCS---EEECGGGCSSCHHHHHH
T ss_pred HHhhCCCCCCEEEEECCCchhHHHHHHHHHcCCceeeccCChHHHH-HHHHHc----CCc---EEEcCCCchhHHHHHHH
Confidence 345567899999999997 445556566554 56899999999765 555432 221 11111111110
Q ss_pred CCCCCCccEEEEcccccCCcChHHHHHHHHHHHHhcCC-CCceEee
Q 026036 142 PIPNPDWDLILASDILLYVKQYSNLIKSLSVLLKSYKP-KDSQVGH 186 (244)
Q Consensus 142 ~~~~~~fD~I~~~~~l~~~~~~~~l~~~l~~~~~~lk~-gG~~~~~ 186 (244)
......+|+|+-.-. .. .++......+++ +|++++.
T Consensus 92 ~~~~~G~d~vid~~g------~~---~~~~~~~~~~~~~~G~~v~v 128 (174)
T d1p0fa2 92 EKTNGGVDYAVECAG------RI---ETMMNALQSTYCGSGVTVVL 128 (174)
T ss_dssp HHTTSCBSEEEECSC------CH---HHHHHHHHTBCTTTCEEEEC
T ss_pred HhcCCCCcEEEEcCC------Cc---hHHHHHHHHHHHhcCceEEE
Confidence 011346888875211 12 455556666655 5887766
|
| >d2py6a1 c.66.1.56 (A:14-408) Methyltransferase FkbM {Methylobacillus flagellatus [TaxId: 405]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: FkbM-like domain: Methyltransferase FkbM species: Methylobacillus flagellatus [TaxId: 405]
Probab=91.31 E-value=0.34 Score=39.12 Aligned_cols=51 Identities=6% Similarity=0.012 Sum_probs=39.9
Q ss_pred cccCCeEEEeCCCCcHHHHHHHHhC---CCeEEEEeCChHHHHHHHHHhHHhcCC
Q 026036 75 WIERRRCIELGSGTGALAIFLRKAM---NLDITTSDYNDQEIEDNIAYNSTTNGI 126 (244)
Q Consensus 75 ~~~~~~VLdlG~G~G~~~~~~a~~~---~~~v~~~D~~~~~l~~~~~~~~~~~~~ 126 (244)
..++..++|+||-.|..+..++... ..+|+++|.++... +.+++|...+..
T Consensus 210 l~kn~vfIDVGAniG~~s~~f~~~~~~~~~kV~aFEP~p~n~-~~LkkNi~~n~~ 263 (395)
T d2py6a1 210 FSDSEKMVDCGASIGESLAGLIGVTKGKFERVWMIEPDRINL-QTLQNVLRRYTD 263 (395)
T ss_dssp CCSSCEEEEETCTTSHHHHHHHHHHTSCCSEEEEECCCHHHH-HHHHHHHHHTTT
T ss_pred cCCCCEEEECCcCCCHHHHHHHHhcCCCCCEEEEEeCCHHHH-HHHHHHHHhccc
Confidence 3467799999999998887665432 46899999999876 778888776654
|
| >d1iz0a2 c.2.1.1 (A:99-269) Quinone oxidoreductase {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Quinone oxidoreductase species: Thermus thermophilus [TaxId: 274]
Probab=90.48 E-value=0.22 Score=35.08 Aligned_cols=105 Identities=12% Similarity=0.079 Sum_probs=63.2
Q ss_pred hHHHHHHHHhhccCcccCCeEEEeCC--CCcHHHHHHHHhCCCeEEEEeCChHHHHHHHHHhHHhcCCCCCcceEeeecC
Q 026036 61 GTFSFAEWLMHHREWIERRRCIELGS--GTGALAIFLRKAMNLDITTSDYNDQEIEDNIAYNSTTNGITPALPHIKHSWG 138 (244)
Q Consensus 61 ~~~~l~~~~~~~~~~~~~~~VLdlG~--G~G~~~~~~a~~~~~~v~~~D~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 138 (244)
.+...+.+.+......+|.+||=.|+ |.|..++.+++..+++|++++.+++.. +.+++ .+.. . .++..
T Consensus 11 ~~~~TA~~al~~~~~~~g~~VlI~ga~G~vG~~aiqlak~~G~~vi~~~~~~~~~-~~~~~----lGa~----~-~i~~~ 80 (171)
T d1iz0a2 11 VSFLTAYLALKRAQARPGEKVLVQAAAGALGTAAVQVARAMGLRVLAAASRPEKL-ALPLA----LGAE----E-AATYA 80 (171)
T ss_dssp HHHHHHHHHHHHTTCCTTCEEEESSTTBHHHHHHHHHHHHTTCEEEEEESSGGGS-HHHHH----TTCS----E-EEEGG
T ss_pred HHHHHHHHHHHHhCCCCCCEEEEEeccccchhhhhhhhccccccccccccccccc-ccccc----cccc----e-eeehh
Confidence 33344444445556779999999885 346677778888899999999987654 44432 2221 1 11111
Q ss_pred CCCC--CCCCCccEEEEcccccCCcChHHHHHHHHHHHHhcCCCCceEee
Q 026036 139 DAFP--IPNPDWDLILASDILLYVKQYSNLIKSLSVLLKSYKPKDSQVGH 186 (244)
Q Consensus 139 ~~~~--~~~~~fD~I~~~~~l~~~~~~~~l~~~l~~~~~~lk~gG~~~~~ 186 (244)
+... .....+|+|+- +. - + .+....+.++|+|+++..
T Consensus 81 ~~~~~~~~~~g~D~v~d--~~-G----~----~~~~~~~~l~~~G~~v~~ 119 (171)
T d1iz0a2 81 EVPERAKAWGGLDLVLE--VR-G----K----EVEESLGLLAHGGRLVYI 119 (171)
T ss_dssp GHHHHHHHTTSEEEEEE--CS-C----T----THHHHHTTEEEEEEEEEC
T ss_pred hhhhhhhcccccccccc--cc-c----h----hHHHHHHHHhcCCcEEEE
Confidence 1100 11246998875 33 1 1 234567899999998765
|
| >d1p3da1 c.5.1.1 (A:11-106) UDP-N-acetylmuramate-alanine ligase MurC {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: MurCD N-terminal domain superfamily: MurCD N-terminal domain family: MurCD N-terminal domain domain: UDP-N-acetylmuramate-alanine ligase MurC species: Haemophilus influenzae [TaxId: 727]
Probab=90.15 E-value=0.77 Score=28.86 Aligned_cols=70 Identities=17% Similarity=0.221 Sum_probs=40.3
Q ss_pred cccCCeEEEeC-CCCcHHHH--HHHHhCCCeEEEEeCChHHHHHHHHHhHHhcCCCCCcceEeeecCCCCCCCCCCccEE
Q 026036 75 WIERRRCIELG-SGTGALAI--FLRKAMNLDITTSDYNDQEIEDNIAYNSTTNGITPALPHIKHSWGDAFPIPNPDWDLI 151 (244)
Q Consensus 75 ~~~~~~VLdlG-~G~G~~~~--~~a~~~~~~v~~~D~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fD~I 151 (244)
....++|.=+| ||+|..++ .+..+ +.+|+|.|.......+.+ ...++ .+...+ +.. .....|+|
T Consensus 5 ~~~~~~ihfiGigG~GMs~LA~~L~~~-G~~VsGSD~~~~~~~~~L----~~~Gi-----~v~~g~-~~~--~i~~~d~v 71 (96)
T d1p3da1 5 MRRVQQIHFIGIGGAGMSGIAEILLNE-GYQISGSDIADGVVTQRL----AQAGA-----KIYIGH-AEE--HIEGASVV 71 (96)
T ss_dssp CTTCCEEEEETTTSTTHHHHHHHHHHH-TCEEEEEESCCSHHHHHH----HHTTC-----EEEESC-CGG--GGTTCSEE
T ss_pred chhCCEEEEEEECHHHHHHHHHHHHhC-CCEEEEEeCCCChhhhHH----HHCCC-----eEEECC-ccc--cCCCCCEE
Confidence 34557888888 57886654 44443 889999998754322322 23344 222211 111 12357999
Q ss_pred EEcccc
Q 026036 152 LASDIL 157 (244)
Q Consensus 152 ~~~~~l 157 (244)
+.+..+
T Consensus 72 V~S~AI 77 (96)
T d1p3da1 72 VVSSAI 77 (96)
T ss_dssp EECTTS
T ss_pred EECCCc
Confidence 988887
|
| >d1vj1a2 c.2.1.1 (A:125-311) Putative zinc-binding alcohol dehydrogenase {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Putative zinc-binding alcohol dehydrogenase species: Mouse (Mus musculus) [TaxId: 10090]
Probab=89.32 E-value=0.32 Score=34.65 Aligned_cols=94 Identities=7% Similarity=0.017 Sum_probs=56.4
Q ss_pred CcccC--CeEEEeC--CCCcHHHHHHHHhCCC-eEEEEeCChHHHHHHHHHhHHhcCCCCCcceEeeecCCCC------C
Q 026036 74 EWIER--RRCIELG--SGTGALAIFLRKAMNL-DITTSDYNDQEIEDNIAYNSTTNGITPALPHIKHSWGDAF------P 142 (244)
Q Consensus 74 ~~~~~--~~VLdlG--~G~G~~~~~~a~~~~~-~v~~~D~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~ 142 (244)
...+| .+||=.| .|.|..++.+|+..++ .|+++..+++.. ..+.+. .+. ...++..+.. .
T Consensus 25 ~~~~G~~etVLI~gaaGgVG~~aiQlak~~Ga~~vi~~~~~~e~~-~~l~~~---~ga-----d~vi~~~~~~~~~~~~~ 95 (187)
T d1vj1a2 25 HISAGSNQTMVVSGAAGACGSLAGQIGHLLGCSRVVGICGTQEKC-LFLTSE---LGF-----DAAVNYKTGNVAEQLRE 95 (187)
T ss_dssp CCCTTSCCEEEESSTTSTTGGGHHHHHHHTTCSEEEEEESSHHHH-HHHHHH---SCC-----SEEEETTSSCHHHHHHH
T ss_pred CCCCCCCCEEEEECCCchhhHHHHHHHHHcCCcceecccchHHHH-hhhhhc---ccc-----eEEeeccchhHHHHHHH
Confidence 34455 6799887 3688999999988765 577777776543 222221 122 1112221110 0
Q ss_pred CCCCCccEEEEcccccCCcChHHHHHHHHHHHHhcCCCCceEee
Q 026036 143 IPNPDWDLILASDILLYVKQYSNLIKSLSVLLKSYKPKDSQVGH 186 (244)
Q Consensus 143 ~~~~~fD~I~~~~~l~~~~~~~~l~~~l~~~~~~lk~gG~~~~~ 186 (244)
.....+|+|+ |++ .. ..+....+.++++|+++..
T Consensus 96 ~~~~GvDvv~--D~v-----Gg---~~~~~~~~~l~~~G~iv~~ 129 (187)
T d1vj1a2 96 ACPGGVDVYF--DNV-----GG---DISNTVISQMNENSHIILC 129 (187)
T ss_dssp HCTTCEEEEE--ESS-----CH---HHHHHHHTTEEEEEEEEEC
T ss_pred HhccCceEEE--ecC-----Cc---hhHHHHhhhccccccEEEe
Confidence 1234699987 444 12 5677889999999998765
|
| >d1g55a_ c.66.1.26 (A:) DNMT2 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: C5 cytosine-specific DNA methylase, DCM domain: DNMT2 species: Human (Homo sapiens) [TaxId: 9606]
Probab=89.00 E-value=0.38 Score=37.34 Aligned_cols=42 Identities=29% Similarity=0.373 Sum_probs=32.1
Q ss_pred CCeEEEeCCCCcHHHHHHHHhC-CCe-EEEEeCChHHHHHHHHHh
Q 026036 78 RRRCIELGSGTGALAIFLRKAM-NLD-ITTSDYNDQEIEDNIAYN 120 (244)
Q Consensus 78 ~~~VLdlG~G~G~~~~~~a~~~-~~~-v~~~D~~~~~l~~~~~~~ 120 (244)
..+|+||.||.|.++..+...+ ..+ |.++|+++.++ +..+.|
T Consensus 2 p~kv~~lF~G~Gg~~~gl~~aG~~~~~~~a~E~~~~a~-~~~~~n 45 (343)
T d1g55a_ 2 PLRVLELYSGVGGMHHALRESCIPAQVVAAIDVNTVAN-EVYKYN 45 (343)
T ss_dssp CEEEEEETCTTCHHHHHHHHHTCSEEEEEEECCCHHHH-HHHHHH
T ss_pred CCEEEEcCcCccHHHHHHHHcCCCCeEEEEEECCHHHH-HHHHHH
Confidence 3589999999999988876554 224 77999999876 666655
|
| >d1cdoa2 c.2.1.1 (A:165-339) Alcohol dehydrogenase {Cod (Gadus callarias) [TaxId: 8053]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Alcohol dehydrogenase species: Cod (Gadus callarias) [TaxId: 8053]
Probab=88.20 E-value=0.85 Score=31.70 Aligned_cols=47 Identities=17% Similarity=0.236 Sum_probs=33.3
Q ss_pred hccCcccCCeEEEeCCCCcHH-HHHHHHhC-CCeEEEEeCChHHHHHHHH
Q 026036 71 HHREWIERRRCIELGSGTGAL-AIFLRKAM-NLDITTSDYNDQEIEDNIA 118 (244)
Q Consensus 71 ~~~~~~~~~~VLdlG~G~G~~-~~~~a~~~-~~~v~~~D~~~~~l~~~~~ 118 (244)
......+|.+||=+|+|.+.. +..+++.. +.+|+++|.+++-+ +.++
T Consensus 22 ~~a~~k~g~~VlI~G~Gg~g~~~~~~~~~~g~~~Vi~~~~~~~rl-~~a~ 70 (175)
T d1cdoa2 22 NTAKVEPGSTCAVFGLGAVGLAAVMGCHSAGAKRIIAVDLNPDKF-EKAK 70 (175)
T ss_dssp TTTCCCTTCEEEEECCSHHHHHHHHHHHHTTCSEEEEECSCGGGH-HHHH
T ss_pred HhhCCCCCCEEEEEecCCccchHHHHHHHHhhchheeecchHHHH-HHHH
Confidence 445678999999999987443 44444443 67899999998765 5544
|
| >d2fzwa2 c.2.1.1 (A:163-338) Alcohol dehydrogenase {Human (Homo sapiens), different isozymes [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Alcohol dehydrogenase species: Human (Homo sapiens), different isozymes [TaxId: 9606]
Probab=87.81 E-value=0.41 Score=33.44 Aligned_cols=99 Identities=15% Similarity=0.095 Sum_probs=58.4
Q ss_pred hccCcccCCeEEEeCCC-CcHHHHHHHHhC-CCeEEEEeCChHHHHHHHHHhHHhcCCCCCcceEeeecC-CCC-----C
Q 026036 71 HHREWIERRRCIELGSG-TGALAIFLRKAM-NLDITTSDYNDQEIEDNIAYNSTTNGITPALPHIKHSWG-DAF-----P 142 (244)
Q Consensus 71 ~~~~~~~~~~VLdlG~G-~G~~~~~~a~~~-~~~v~~~D~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~-~~~-----~ 142 (244)
+.....+|.+||=.||| .|..++.+++.. ...|+++|.+++.+ +.+++. +.. ..+...-. +.. .
T Consensus 22 ~~~~~~~G~tVlI~GaGGvG~~aiq~ak~~G~~~vi~~~~~~~k~-~~ak~l----Ga~---~~i~~~~~~~~~~~~~~~ 93 (176)
T d2fzwa2 22 NTAKLEPGSVCAVFGLGGVGLAVIMGCKVAGASRIIGVDINKDKF-ARAKEF----GAT---ECINPQDFSKPIQEVLIE 93 (176)
T ss_dssp TTTCCCTTCEEEEECCSHHHHHHHHHHHHHTCSEEEEECSCGGGH-HHHHHH----TCS---EEECGGGCSSCHHHHHHH
T ss_pred HhhCCCCCCEEEEecchhHHHHHHHHHHHHhcCceEEEcccHHHH-HHHHHh----CCc---EEEeCCchhhHHHHHHHH
Confidence 44567899999999986 445555555555 46899999998764 555432 221 01111000 100 0
Q ss_pred CCCCCccEEEEcccccCCcChHHHHHHHHHHHHhcCCCCceEee
Q 026036 143 IPNPDWDLILASDILLYVKQYSNLIKSLSVLLKSYKPKDSQVGH 186 (244)
Q Consensus 143 ~~~~~fD~I~~~~~l~~~~~~~~l~~~l~~~~~~lk~gG~~~~~ 186 (244)
.....+|+|+-. . ..+ .+++.....+++||.+.+.
T Consensus 94 ~~~~g~D~vid~--~----G~~---~~~~~~~~~~~~g~~~~~v 128 (176)
T d2fzwa2 94 MTDGGVDYSFEC--I----GNV---KVMRAALEACHKGWGVSVV 128 (176)
T ss_dssp HTTSCBSEEEEC--S----CCH---HHHHHHHHTBCTTTCEEEE
T ss_pred HcCCCCcEeeec--C----CCH---HHHHHHHHhhcCCceeEEE
Confidence 113468998863 1 122 5666788889998877655
|
| >d1o8ca2 c.2.1.1 (A:116-192) Hypothetical protein YhdH {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Hypothetical protein YhdH species: Escherichia coli [TaxId: 562]
Probab=87.59 E-value=0.5 Score=28.51 Aligned_cols=45 Identities=11% Similarity=0.197 Sum_probs=33.7
Q ss_pred cCcccCCeEEEeCC--CCcHHHHHHHHhCCCeEEEEeCChHHHHHHHH
Q 026036 73 REWIERRRCIELGS--GTGALAIFLRKAMNLDITTSDYNDQEIEDNIA 118 (244)
Q Consensus 73 ~~~~~~~~VLdlG~--G~G~~~~~~a~~~~~~v~~~D~~~~~l~~~~~ 118 (244)
....++.+||=.|+ |.|..++.+++..+.+|+++--+++.. +.++
T Consensus 27 ~~~~~~~~vlI~gasGgVG~~aiQlak~~G~~Vi~~t~s~~k~-~~~~ 73 (77)
T d1o8ca2 27 GVRPQDGEIVVTGASGGVGSTAVALLHKLGYQVVAVSGRESTH-EYLK 73 (77)
T ss_dssp TCCGGGCEEEESSTTSHHHHHHHHHHHHTTCCEEEEESCGGGH-HHHH
T ss_pred hhccCCCcEEEEeCCCcHHHHHHHHHHHcCCeEEEEECCHHHH-HHHH
Confidence 44567888988876 455667778888899999999988754 5554
|
| >d1g0oa_ c.2.1.2 (A:) 1,3,8-trihydroxynaphtalene reductase (THNR, naphtol reductase) {Rice blast fungus (Magnaporthe grisea) [TaxId: 148305]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: 1,3,8-trihydroxynaphtalene reductase (THNR, naphtol reductase) species: Rice blast fungus (Magnaporthe grisea) [TaxId: 148305]
Probab=87.10 E-value=2.3 Score=31.81 Aligned_cols=109 Identities=11% Similarity=0.060 Sum_probs=60.7
Q ss_pred cccCCeEEEeCCCCcHHHHHHHHhC---CCeEEEEeCChHHHHHHHHHhHHhcCCCCCcceEeeecCCCCC---------
Q 026036 75 WIERRRCIELGSGTGALAIFLRKAM---NLDITTSDYNDQEIEDNIAYNSTTNGITPALPHIKHSWGDAFP--------- 142 (244)
Q Consensus 75 ~~~~~~VLdlG~G~G~~~~~~a~~~---~~~v~~~D~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------- 142 (244)
..+|+++|=-|++.|+ +..+++.+ +++|+.+|.+.....+.+.......+. ++..+..|..+...
T Consensus 15 sL~gK~~lITGas~GI-G~aia~~la~~Ga~Vvi~~~~~~~~~~~~~~~~~~~g~--~~~~~~~D~~~~~~v~~~~~~~~ 91 (272)
T d1g0oa_ 15 SLEGKVALVTGAGRGI-GREMAMELGRRGCKVIVNYANSTESAEEVVAAIKKNGS--DAACVKANVGVVEDIVRMFEEAV 91 (272)
T ss_dssp CCTTCEEEETTTTSHH-HHHHHHHHHHTTCEEEEEESSCHHHHHHHHHHHHHTTC--CEEEEECCTTCHHHHHHHHHHHH
T ss_pred CCCCCEEEEeCCCCHH-HHHHHHHHHHcCCEEEEEeCCchHHHHHHHHHHHhhCC--ceeeEeCCCCCHHHHHHHHHHHH
Confidence 3578888888886664 44443332 889999998754222444444444333 23344444443211
Q ss_pred CCCCCccEEEEcccccCCc-----ChH-----------HHHHHHHHHHHhcCCCCceEee
Q 026036 143 IPNPDWDLILASDILLYVK-----QYS-----------NLIKSLSVLLKSYKPKDSQVGH 186 (244)
Q Consensus 143 ~~~~~fD~I~~~~~l~~~~-----~~~-----------~l~~~l~~~~~~lk~gG~~~~~ 186 (244)
...+..|+++.+....... ... ......+.+.+.++.+|+.++.
T Consensus 92 ~~~g~idilV~nag~~~~~~~~~~~~~~~~~~~~~nl~~~~~~~~~~~~~m~~~g~~i~i 151 (272)
T d1g0oa_ 92 KIFGKLDIVCSNSGVVSFGHVKDVTPEEFDRVFTINTRGQFFVAREAYKHLEIGGRLILM 151 (272)
T ss_dssp HHHSCCCEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHSCTTCEEEEE
T ss_pred HHhCCCCccccccccchhhhhhhhhhhHHHHHhhhccceeeeeccccccccccccccccc
Confidence 0124678888766543221 111 1234467777888888887766
|
| >d1nyta1 c.2.1.7 (A:102-271) Shikimate 5-dehydrogenase AroE {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Aminoacid dehydrogenase-like, C-terminal domain domain: Shikimate 5-dehydrogenase AroE species: Escherichia coli [TaxId: 562]
Probab=86.25 E-value=3.7 Score=28.20 Aligned_cols=45 Identities=11% Similarity=0.113 Sum_probs=28.5
Q ss_pred HhhccCcccCCeEEEeCCCCcHHH-HHHHHhCCCeEEEEeCChHHH
Q 026036 69 LMHHREWIERRRCIELGSGTGALA-IFLRKAMNLDITTSDYNDQEI 113 (244)
Q Consensus 69 ~~~~~~~~~~~~VLdlG~G~G~~~-~~~a~~~~~~v~~~D~~~~~l 113 (244)
+.+.....+|++||=||||--.-+ .+.....+.+|+.+.-+.+..
T Consensus 9 l~~~~~~~~~k~vlIlGaGGaarai~~al~~~g~~i~I~nRt~~ka 54 (170)
T d1nyta1 9 LERLSFIRPGLRILLIGAGGASRGVLLPLLSLDCAVTITNRTVSRA 54 (170)
T ss_dssp HHHHTCCCTTCEEEEECCSHHHHHHHHHHHHTTCEEEEECSSHHHH
T ss_pred HHHcCCCCCCCEEEEECCcHHHHHHHHHhcccceEEEeccchHHHH
Confidence 333344568899999999643322 222233467899999887654
|
| >d1j6ua1 c.5.1.1 (A:0-88) UDP-N-acetylmuramate-alanine ligase MurC {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: MurCD N-terminal domain superfamily: MurCD N-terminal domain family: MurCD N-terminal domain domain: UDP-N-acetylmuramate-alanine ligase MurC species: Thermotoga maritima [TaxId: 2336]
Probab=86.24 E-value=0.97 Score=27.97 Aligned_cols=66 Identities=23% Similarity=0.186 Sum_probs=36.7
Q ss_pred eEEEeC-CCCcHHHHHH-HHhCCCeEEEEeCChHHHHHHHHHhHHhcCCCCCcceEeeecCCCCCCCCCCccEEEEcccc
Q 026036 80 RCIELG-SGTGALAIFL-RKAMNLDITTSDYNDQEIEDNIAYNSTTNGITPALPHIKHSWGDAFPIPNPDWDLILASDIL 157 (244)
Q Consensus 80 ~VLdlG-~G~G~~~~~~-a~~~~~~v~~~D~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fD~I~~~~~l 157 (244)
||-=+| ||+|..+++. +...+.+|+|.|..+....+. +...+++ +.... +... ....|+|+.+..+
T Consensus 3 ~ihfiGIgG~GMs~LA~~L~~~G~~VsGSD~~~~~~t~~----L~~~Gi~-----i~~gh-~~~~--i~~~d~vV~SsAI 70 (89)
T d1j6ua1 3 KIHFVGIGGIGMSAVALHEFSNGNDVYGSNIEETERTAY----LRKLGIP-----IFVPH-SADN--WYDPDLVIKTPAV 70 (89)
T ss_dssp EEEEETTTSHHHHHHHHHHHHTTCEEEEECSSCCHHHHH----HHHTTCC-----EESSC-CTTS--CCCCSEEEECTTC
T ss_pred EEEEEeECHHHHHHHHHHHHhCCCeEEEEeCCCChhHHH----HHHCCCe-----EEeee-cccc--cCCCCEEEEecCc
Confidence 455556 5677665432 233488999999987433232 4444551 11111 1111 1357999998887
|
| >d1luaa1 c.2.1.7 (A:98-288) Methylene-tetrahydromethanopterin dehydrogenase {Methylobacterium extorquens [TaxId: 408]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Aminoacid dehydrogenase-like, C-terminal domain domain: Methylene-tetrahydromethanopterin dehydrogenase species: Methylobacterium extorquens [TaxId: 408]
Probab=84.56 E-value=1.5 Score=31.02 Aligned_cols=79 Identities=6% Similarity=0.021 Sum_probs=45.1
Q ss_pred cCcccCCeEEEeCCCCcHH---HHHHHHhCCCeEEEEeCChHHHHHHHHHhHHh-cCCCCCcceEeeecCCCC--CCCCC
Q 026036 73 REWIERRRCIELGSGTGAL---AIFLRKAMNLDITTSDYNDQEIEDNIAYNSTT-NGITPALPHIKHSWGDAF--PIPNP 146 (244)
Q Consensus 73 ~~~~~~~~VLdlG~G~G~~---~~~~a~~~~~~v~~~D~~~~~l~~~~~~~~~~-~~~~~~~~~~~~~~~~~~--~~~~~ 146 (244)
....+|++||=.|++.|.- +..+++. +.+|+.++.+++.+ +.+...... ... .....+..+.. ...-+
T Consensus 18 ~~~l~gK~vlItGasgGIG~~ia~~la~~-G~~V~~~~r~~~~~-~~~~~~~~~~~~~----~~~~~d~~~~~~~~~~~~ 91 (191)
T d1luaa1 18 GGSVKGKKAVVLAGTGPVGMRSAALLAGE-GAEVVLCGRKLDKA-QAAADSVNKRFKV----NVTAAETADDASRAEAVK 91 (191)
T ss_dssp TSCCTTCEEEEETTTSHHHHHHHHHHHHT-TCEEEEEESSHHHH-HHHHHHHHHHHTC----CCEEEECCSHHHHHHHTT
T ss_pred CCCCCCCEEEEECCCHHHHHHHHHHHHhh-ccchhhcccchHHH-HHHHHHHHhccch----hhhhhhcccHHHHHHHhc
Confidence 4466899999998766532 2334443 78999999998776 333333322 222 22333333221 11124
Q ss_pred CccEEEEcccc
Q 026036 147 DWDLILASDIL 157 (244)
Q Consensus 147 ~fD~I~~~~~l 157 (244)
..|+++.+-..
T Consensus 92 ~iDilin~Ag~ 102 (191)
T d1luaa1 92 GAHFVFTAGAI 102 (191)
T ss_dssp TCSEEEECCCT
T ss_pred CcCeeeecCcc
Confidence 67999887554
|
| >d1bg6a2 c.2.1.6 (A:4-187) N-(1-D-carboxylethyl)-L-norvaline dehydrogenase {Arthrobacter, strain 1c [TaxId: 1663]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: N-(1-D-carboxylethyl)-L-norvaline dehydrogenase species: Arthrobacter, strain 1c [TaxId: 1663]
Probab=84.37 E-value=0.99 Score=31.36 Aligned_cols=98 Identities=17% Similarity=0.153 Sum_probs=48.9
Q ss_pred CeEEEeCCCCcHHH--HHHHHhCCCeEEEEeCChHHHHHHHHHhHHhcCCCCCcceEee--ecCCCCCCCCCCccEEEEc
Q 026036 79 RRCIELGSGTGALA--IFLRKAMNLDITTSDYNDQEIEDNIAYNSTTNGITPALPHIKH--SWGDAFPIPNPDWDLILAS 154 (244)
Q Consensus 79 ~~VLdlG~G~G~~~--~~~a~~~~~~v~~~D~~~~~l~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~fD~I~~~ 154 (244)
++|-=+|+|.-..+ ..+++ .+.+|++.|.+++.+ +.++..-.............. .............|+|+..
T Consensus 2 k~iaIiGaG~~G~~~A~~l~~-~G~~V~~~~r~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~aD~iii~ 79 (184)
T d1bg6a2 2 KTYAVLGLGNGGHAFAAYLAL-KGQSVLAWDIDAQRI-KEIQDRGAIIAEGPGLAGTAHPDLLTSDIGLAVKDADVILIV 79 (184)
T ss_dssp CEEEEECCSHHHHHHHHHHHH-TTCEEEEECSCHHHH-HHHHHHTSEEEESSSCCEEECCSEEESCHHHHHTTCSEEEEC
T ss_pred CEEEEECccHHHHHHHHHHHH-CCCEEEEEECCHHHH-HHHHHcCCCchhhhhhhhhhhhhhhhhhhHhHhcCCCEEEEE
Confidence 46666787754433 33333 378999999998765 444332110000000000000 0000001112358988874
Q ss_pred ccccCCcChHHHHHHHHHHHHhcCCCCceE
Q 026036 155 DILLYVKQYSNLIKSLSVLLKSYKPKDSQV 184 (244)
Q Consensus 155 ~~l~~~~~~~~l~~~l~~~~~~lk~gG~~~ 184 (244)
-.- ......++++...++++-.++
T Consensus 80 v~~------~~~~~~~~~i~~~l~~~~~iv 103 (184)
T d1bg6a2 80 VPA------IHHASIAANIASYISEGQLII 103 (184)
T ss_dssp SCG------GGHHHHHHHHGGGCCTTCEEE
T ss_pred Ech------hHHHHHHHHhhhccCCCCEEE
Confidence 222 234478888899998876443
|
| >d1eg2a_ c.66.1.11 (A:) m.RsrI N6 adenosine-specific DNA methyltransferase {Rhodobacter sphaeroides [TaxId: 1063]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Type II DNA methylase domain: m.RsrI N6 adenosine-specific DNA methyltransferase species: Rhodobacter sphaeroides [TaxId: 1063]
Probab=83.65 E-value=0.87 Score=34.04 Aligned_cols=43 Identities=14% Similarity=0.079 Sum_probs=31.0
Q ss_pred CCCCccEEEEcccccCC--------cChHHHHHHHHHHHHhcCCCCceEee
Q 026036 144 PNPDWDLILASDILLYV--------KQYSNLIKSLSVLLKSYKPKDSQVGH 186 (244)
Q Consensus 144 ~~~~fD~I~~~~~l~~~--------~~~~~l~~~l~~~~~~lk~gG~~~~~ 186 (244)
+++++|+|+...+.... .-..-+...+.++.|+|||+|.+++.
T Consensus 20 ~d~SIDliitDPPYn~~~~~~~~~~~y~~~~~~~~~e~~rvLk~~G~~~~~ 70 (279)
T d1eg2a_ 20 PDDSVQLIICDPPYNIMLADWDDHMDYIGWAKRWLAEAERVLSPTGSIAIF 70 (279)
T ss_dssp CTTCEEEEEECCCSBCCGGGGGTCSSHHHHHHHHHHHHHHHEEEEEEEEEE
T ss_pred cCCCccEEEECCCCCCCcccccCHHHHHHHHHHHHHHHHHHhCCCccEEEe
Confidence 45789999987774211 11234567788999999999998876
|
| >d2pgda2 c.2.1.6 (A:1-176) 6-phosphogluconate dehydrogenase {Sheep (Ovis orientalis aries) [TaxId: 9940]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: 6-phosphogluconate dehydrogenase species: Sheep (Ovis orientalis aries) [TaxId: 9940]
Probab=82.66 E-value=2.8 Score=29.02 Aligned_cols=85 Identities=11% Similarity=0.017 Sum_probs=43.8
Q ss_pred CCcHHHHHHHHhC---CCeEEEEeCChHHHHHHHHHhHHhcCCCCCcceEeeecCCCCCCCCCCccEEEEcccccCCcCh
Q 026036 87 GTGALAIFLRKAM---NLDITTSDYNDQEIEDNIAYNSTTNGITPALPHIKHSWGDAFPIPNPDWDLILASDILLYVKQY 163 (244)
Q Consensus 87 G~G~~~~~~a~~~---~~~v~~~D~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fD~I~~~~~l~~~~~~ 163 (244)
|.|.++..+|+.. +.+|++.|.+++.+.+..+........ ......+.........|.|+..- ...
T Consensus 9 GlG~MG~~mA~~L~~~G~~V~v~dr~~~~~~~l~~~~~~~~~~------~~a~~~~~~~~~~~~~~~ii~~~-----~~~ 77 (176)
T d2pgda2 9 GLAVMGQNLILNMNDHGFVVCAFNRTVSKVDDFLANEAKGTKV------LGAHSLEEMVSKLKKPRRIILLV-----KAG 77 (176)
T ss_dssp CCSHHHHHHHHHHHHTTCCEEEECSSTHHHHHHHHTTTTTSSC------EECSSHHHHHHHBCSSCEEEECS-----CTT
T ss_pred eEhHHHHHHHHHHHHCCCeEEEEcCCHHHHHHHHHhccccccc------cchhhhhhhhhhhcccceEEEec-----Cch
Confidence 5566666665544 778999999998763332222111110 00000000000112356776632 223
Q ss_pred HHHHHHHHHHHHhcCCCCc
Q 026036 164 SNLIKSLSVLLKSYKPKDS 182 (244)
Q Consensus 164 ~~l~~~l~~~~~~lk~gG~ 182 (244)
+.....+..+...+++|-.
T Consensus 78 ~~v~~v~~~l~~~~~~g~i 96 (176)
T d2pgda2 78 QAVDNFIEKLVPLLDIGDI 96 (176)
T ss_dssp HHHHHHHHHHHHHCCTTCE
T ss_pred HHHHHHHHHHHhccccCcE
Confidence 5556778888888988753
|
| >d1iy8a_ c.2.1.2 (A:) Levodione reductase {Corynebacterium aquaticum [TaxId: 144185]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Levodione reductase species: Corynebacterium aquaticum [TaxId: 144185]
Probab=82.38 E-value=2.7 Score=31.17 Aligned_cols=80 Identities=11% Similarity=0.106 Sum_probs=46.5
Q ss_pred ccCCeEEEeCCCCcH---HHHHHHHhCCCeEEEEeCChHHHHHHHHHhHHhcCCCCCcceEeeecCCCCCC---------
Q 026036 76 IERRRCIELGSGTGA---LAIFLRKAMNLDITTSDYNDQEIEDNIAYNSTTNGITPALPHIKHSWGDAFPI--------- 143 (244)
Q Consensus 76 ~~~~~VLdlG~G~G~---~~~~~a~~~~~~v~~~D~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------- 143 (244)
++|+.+|=-|++.|+ ++..+++. +++|+.+|.+++.+ +.............++..+..|..+....
T Consensus 2 l~gK~alITGas~GIG~aia~~la~~-Ga~V~i~~r~~~~l-~~~~~~~~~~~~~~~~~~~~~Dvt~~~~v~~~~~~~~~ 79 (258)
T d1iy8a_ 2 FTDRVVLITGGGSGLGRATAVRLAAE-GAKLSLVDVSSEGL-EASKAAVLETAPDAEVLTTVADVSDEAQVEAYVTATTE 79 (258)
T ss_dssp CTTCEEEEETTTSHHHHHHHHHHHHT-TCEEEEEESCHHHH-HHHHHHHHHHCTTCCEEEEECCTTSHHHHHHHHHHHHH
T ss_pred CCCCEEEEeCCCCHHHHHHHHHHHHC-CCEEEEEECCHHHH-HHHHHHHHhhCCCCeEEEEeccCCCHHHHHHHHHHHHH
Confidence 467888888887664 23444444 78999999998876 33333333222222344455555442110
Q ss_pred CCCCccEEEEcccc
Q 026036 144 PNPDWDLILASDIL 157 (244)
Q Consensus 144 ~~~~fD~I~~~~~l 157 (244)
.-++.|++|.+--+
T Consensus 80 ~~G~iDiLVnnAG~ 93 (258)
T d1iy8a_ 80 RFGRIDGFFNNAGI 93 (258)
T ss_dssp HHSCCSEEEECCCC
T ss_pred HhCCCCEEEECCcc
Confidence 12468988886544
|
| >d2gdza1 c.2.1.2 (A:3-256) 15-hydroxyprostaglandin dehydrogenase, PGDH {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: 15-hydroxyprostaglandin dehydrogenase, PGDH species: Human (Homo sapiens) [TaxId: 9606]
Probab=82.02 E-value=1.9 Score=32.01 Aligned_cols=85 Identities=11% Similarity=0.061 Sum_probs=47.6
Q ss_pred cCCeEEEeCCCCcHHHHHHHHhC---CCeEEEEeCChHHHHHHHHHhHHhcCCCCCcceEeeecCCCCC---------CC
Q 026036 77 ERRRCIELGSGTGALAIFLRKAM---NLDITTSDYNDQEIEDNIAYNSTTNGITPALPHIKHSWGDAFP---------IP 144 (244)
Q Consensus 77 ~~~~VLdlG~G~G~~~~~~a~~~---~~~v~~~D~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------~~ 144 (244)
.|+.+|=-|++.| ++..+++.+ +++|+.+|.+.+.+.+ +...+....-..++..+..|..+... ..
T Consensus 2 ~GKvalITGas~G-IG~aia~~la~~Ga~V~i~~r~~~~~~~-~~~~l~~~~~~~~~~~~~~Dv~~~~~v~~~~~~~~~~ 79 (254)
T d2gdza1 2 NGKVALVTGAAQG-IGRAFAEALLLKGAKVALVDWNLEAGVQ-CKAALHEQFEPQKTLFIQCDVADQQQLRDTFRKVVDH 79 (254)
T ss_dssp TTCEEEEETTTSH-HHHHHHHHHHHTTCEEEEEESCHHHHHH-HHHHHTTTSCGGGEEEEECCTTSHHHHHHHHHHHHHH
T ss_pred CCCEEEEeCCCCH-HHHHHHHHHHHCCCEEEEEECCHHHHHH-HHHHHHHhcCCCcEEEEEeecCCHHHHHHHHHHHHHH
Confidence 4677787787655 354444433 8899999999876633 33222221111233344555544211 01
Q ss_pred CCCccEEEEcccccCCcCh
Q 026036 145 NPDWDLILASDILLYVKQY 163 (244)
Q Consensus 145 ~~~fD~I~~~~~l~~~~~~ 163 (244)
-++.|+++.+-........
T Consensus 80 ~G~iDilVnnAg~~~~~~~ 98 (254)
T d2gdza1 80 FGRLDILVNNAGVNNEKNW 98 (254)
T ss_dssp HSCCCEEEECCCCCCSSSH
T ss_pred cCCcCeecccccccccccc
Confidence 2578999988777554433
|
| >d1yb1a_ c.2.1.2 (A:) 17-beta-hydroxysteroid dehydrogenase type XI {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: 17-beta-hydroxysteroid dehydrogenase type XI species: Human (Homo sapiens) [TaxId: 9606]
Probab=81.84 E-value=3.6 Score=30.25 Aligned_cols=79 Identities=13% Similarity=0.121 Sum_probs=47.4
Q ss_pred ccCCeEEEeCCCCcHH---HHHHHHhCCCeEEEEeCChHHHHHHHHHhHHhcCCCCCcceEeeecCCCCC---------C
Q 026036 76 IERRRCIELGSGTGAL---AIFLRKAMNLDITTSDYNDQEIEDNIAYNSTTNGITPALPHIKHSWGDAFP---------I 143 (244)
Q Consensus 76 ~~~~~VLdlG~G~G~~---~~~~a~~~~~~v~~~D~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------~ 143 (244)
..|+.+|=-|++.|+- +..+++. +.+|+.+|.+++.+ +.+...+...+. ++..+..|..+... .
T Consensus 5 l~Gkv~lITGas~GIG~~ia~~la~~-G~~V~l~~r~~~~l-~~~~~~~~~~~~--~~~~~~~Dvs~~~~v~~~~~~i~~ 80 (244)
T d1yb1a_ 5 VTGEIVLITGAGHGIGRLTAYEFAKL-KSKLVLWDINKHGL-EETAAKCKGLGA--KVHTFVVDCSNREDIYSSAKKVKA 80 (244)
T ss_dssp CTTCEEEEETTTSHHHHHHHHHHHHT-TCEEEEEESCHHHH-HHHHHHHHHTTC--CEEEEECCTTCHHHHHHHHHHHHH
T ss_pred CCCCEEEEeCCCcHHHHHHHHHHHHC-CCEEEEEECCHHHH-HHHHHHHHhcCC--cEEEEEeeCCCHHHHHHHHHHHHH
Confidence 4677777778777642 3344443 88999999999876 444444443332 33444555544211 1
Q ss_pred CCCCccEEEEccccc
Q 026036 144 PNPDWDLILASDILL 158 (244)
Q Consensus 144 ~~~~fD~I~~~~~l~ 158 (244)
..+..|+++.+..+.
T Consensus 81 ~~g~idilinnag~~ 95 (244)
T d1yb1a_ 81 EIGDVSILVNNAGVV 95 (244)
T ss_dssp HTCCCSEEEECCCCC
T ss_pred HcCCCceeEeecccc
Confidence 235689888877664
|
| >d1xkqa_ c.2.1.2 (A:) Hypothetical protein R05D8.7 {Caenorhabditis elegans [TaxId: 6239]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Hypothetical protein R05D8.7 species: Caenorhabditis elegans [TaxId: 6239]
Probab=81.15 E-value=2.3 Score=31.80 Aligned_cols=80 Identities=9% Similarity=0.100 Sum_probs=46.5
Q ss_pred ccCCeEEEeCCCCcHHHHHHHHhC---CCeEEEEeCChHHHHHHHHHhHHhcCCC-CCcceEeeecCCCCC---------
Q 026036 76 IERRRCIELGSGTGALAIFLRKAM---NLDITTSDYNDQEIEDNIAYNSTTNGIT-PALPHIKHSWGDAFP--------- 142 (244)
Q Consensus 76 ~~~~~VLdlG~G~G~~~~~~a~~~---~~~v~~~D~~~~~l~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~--------- 142 (244)
++|+++|=-|++.| ++..+++.+ +++|+.+|.+++.+ +.+.+.+...+.. .++..+..|..+...
T Consensus 3 L~gK~alVTGas~G-IG~aia~~la~~Ga~V~l~~r~~~~l-~~~~~~l~~~~~~~~~~~~~~~Dvs~~~~v~~~~~~~~ 80 (272)
T d1xkqa_ 3 FSNKTVIITGSSNG-IGRTTAILFAQEGANVTITGRSSERL-EETRQIILKSGVSEKQVNSVVADVTTEDGQDQIINSTL 80 (272)
T ss_dssp TTTCEEEETTCSSH-HHHHHHHHHHHTTCEEEEEESCHHHH-HHHHHHHHTTTCCGGGEEEEECCTTSHHHHHHHHHHHH
T ss_pred CCCCEEEEeCcCcH-HHHHHHHHHHHCCCEEEEEECCHHHH-HHHHHHHHhcCCCCCceEEEEccCCCHHHHHHHHHHHH
Confidence 57888888887665 343333332 78999999998876 4444444433321 233445555544211
Q ss_pred CCCCCccEEEEcccc
Q 026036 143 IPNPDWDLILASDIL 157 (244)
Q Consensus 143 ~~~~~fD~I~~~~~l 157 (244)
..-++.|+++.+...
T Consensus 81 ~~~g~iDilvnnAG~ 95 (272)
T d1xkqa_ 81 KQFGKIDVLVNNAGA 95 (272)
T ss_dssp HHHSCCCEEEECCCC
T ss_pred HHhCCceEEEeCCcc
Confidence 012468988876544
|
| >d1vi2a1 c.2.1.7 (A:107-288) Putative shikimate dehydrogenase YdiB {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Aminoacid dehydrogenase-like, C-terminal domain domain: Putative shikimate dehydrogenase YdiB species: Escherichia coli [TaxId: 562]
Probab=81.05 E-value=0.66 Score=32.77 Aligned_cols=45 Identities=13% Similarity=-0.006 Sum_probs=27.8
Q ss_pred HHhhccCcccCCeEEEeCCCCcHH--HHHHHHhCCCeEEEEeCChHH
Q 026036 68 WLMHHREWIERRRCIELGSGTGAL--AIFLRKAMNLDITTSDYNDQE 112 (244)
Q Consensus 68 ~~~~~~~~~~~~~VLdlG~G~G~~--~~~~a~~~~~~v~~~D~~~~~ 112 (244)
-+.......++++||=||||--.- ...++..+..+++.++.+++.
T Consensus 8 ~l~~~~~~l~~k~vlIlGaGGaarai~~al~~~g~~~i~i~nR~~~~ 54 (182)
T d1vi2a1 8 AIKESGFDIKGKTMVLLGAGGASTAIGAQGAIEGLKEIKLFNRRDEF 54 (182)
T ss_dssp HHHHTTCCCTTCEEEEECCSHHHHHHHHHHHHTTCSEEEEEECSSTT
T ss_pred HHHHcCCCcCCCEEEEECCcHHHHHHHHHHhhcCCceEeeeccchHH
Confidence 333333345789999999972222 233444446689999987643
|
| >d1fmca_ c.2.1.2 (A:) 7-alpha-hydroxysteroid dehydrogenase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: 7-alpha-hydroxysteroid dehydrogenase species: Escherichia coli [TaxId: 562]
Probab=81.03 E-value=2.3 Score=31.56 Aligned_cols=78 Identities=12% Similarity=0.109 Sum_probs=45.5
Q ss_pred ccCCeEEEeCCCCcHHHHHHHHhC---CCeEEEEeCChHHHHHHHHHhHHhcCCCCCcceEeeecCCCCC---------C
Q 026036 76 IERRRCIELGSGTGALAIFLRKAM---NLDITTSDYNDQEIEDNIAYNSTTNGITPALPHIKHSWGDAFP---------I 143 (244)
Q Consensus 76 ~~~~~VLdlG~G~G~~~~~~a~~~---~~~v~~~D~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------~ 143 (244)
++|+++|=-|++.| ++..+++.+ +++|+.+|.+++.+ +.+...+...+. ++..+..|..+... .
T Consensus 9 L~gK~alITGas~G-IG~aia~~la~~Ga~V~~~~r~~~~~-~~~~~~l~~~g~--~~~~~~~Dvs~~~~~~~~~~~~~~ 84 (255)
T d1fmca_ 9 LDGKCAIITGAGAG-IGKEIAITFATAGASVVVSDINADAA-NHVVDEIQQLGG--QAFACRCDITSEQELSALADFAIS 84 (255)
T ss_dssp CTTCEEEETTTTSH-HHHHHHHHHHTTTCEEEEEESCHHHH-HHHHHHHHHTTC--CEEEEECCTTCHHHHHHHHHHHHH
T ss_pred CCCCEEEEeCCCcH-HHHHHHHHHHHCCCEEEEEECCHHHH-HHHHHHHHHcCC--cEEEEEccCCCHHHHHHHHHHHHH
Confidence 47888887776555 454444443 88999999998876 444333333322 33445555544211 0
Q ss_pred CCCCccEEEEcccc
Q 026036 144 PNPDWDLILASDIL 157 (244)
Q Consensus 144 ~~~~fD~I~~~~~l 157 (244)
.-++.|+++.+...
T Consensus 85 ~~g~iDilvnnAG~ 98 (255)
T d1fmca_ 85 KLGKVDILVNNAGG 98 (255)
T ss_dssp HHSSCCEEEECCCC
T ss_pred HcCCCCEeeeCCcC
Confidence 12468988887655
|
| >d1g60a_ c.66.1.11 (A:) Methyltransferase mboII {Moraxella bovis [TaxId: 476]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Type II DNA methylase domain: Methyltransferase mboII species: Moraxella bovis [TaxId: 476]
Probab=80.77 E-value=0.52 Score=34.87 Aligned_cols=42 Identities=10% Similarity=0.004 Sum_probs=28.7
Q ss_pred CCCCccEEEEcccccCCc--------Ch----HHHHHHHHHHHHhcCCCCceEee
Q 026036 144 PNPDWDLILASDILLYVK--------QY----SNLIKSLSVLLKSYKPKDSQVGH 186 (244)
Q Consensus 144 ~~~~fD~I~~~~~l~~~~--------~~----~~l~~~l~~~~~~lk~gG~~~~~ 186 (244)
+++++|+|+...+. ... .. .-+.+.++++.++|+|+|.+++.
T Consensus 20 pd~sVdliitdPPY-~~~~~~~d~~~~~~~y~~~~~~~~~e~~rvLk~~g~~~~~ 73 (256)
T d1g60a_ 20 ENKSVQLAVIDPPY-NLSKADWDSFDSHNEFLAFTYRWIDKVLDKLDKDGSLYIF 73 (256)
T ss_dssp CTTCEEEEEECCCC-SSCSSGGGCCSSHHHHHHHHHHHHHHHHHHEEEEEEEEEE
T ss_pred cCCCcCEEEECCCC-CCCcCcCcCCCCHHHHHHHHHHHHHHhhhccccCcccccc
Confidence 45678999987664 221 11 22446788999999999976654
|
| >d1lssa_ c.2.1.9 (A:) Ktn Mja218 {Archaeon Methanococcus jannaschii [TaxId: 2190]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Potassium channel NAD-binding domain domain: Ktn Mja218 species: Archaeon Methanococcus jannaschii [TaxId: 2190]
Probab=80.69 E-value=1.1 Score=29.69 Aligned_cols=32 Identities=25% Similarity=0.283 Sum_probs=23.4
Q ss_pred eEEEeCCCCcHHHHHHHHhC---CCeEEEEeCChHHH
Q 026036 80 RCIELGSGTGALAIFLRKAM---NLDITTSDYNDQEI 113 (244)
Q Consensus 80 ~VLdlG~G~G~~~~~~a~~~---~~~v~~~D~~~~~l 113 (244)
+|+=+ |.|.+|..+++.. +.+|+.+|.+++.+
T Consensus 2 ~IvI~--G~G~~G~~la~~L~~~g~~v~vid~d~~~~ 36 (132)
T d1lssa_ 2 YIIIA--GIGRVGYTLAKSLSEKGHDIVLIDIDKDIC 36 (132)
T ss_dssp EEEEE--CCSHHHHHHHHHHHHTTCEEEEEESCHHHH
T ss_pred EEEEE--CCCHHHHHHHHHHHHCCCCcceecCChhhh
Confidence 44444 5577777776544 78899999999866
|
| >d1nvta1 c.2.1.7 (A:111-287) Shikimate 5-dehydrogenase AroE {Archaeon Methanococcus jannaschii [TaxId: 2190]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Aminoacid dehydrogenase-like, C-terminal domain domain: Shikimate 5-dehydrogenase AroE species: Archaeon Methanococcus jannaschii [TaxId: 2190]
Probab=80.01 E-value=4.1 Score=28.13 Aligned_cols=82 Identities=11% Similarity=0.097 Sum_probs=42.8
Q ss_pred ccCcccCCeEEEeCCCCcHHHHHHHHhCCCeEEEEeCChHHHHHHHHHhHHhcCCCCCcceEeeecCCCCCCCCCCccEE
Q 026036 72 HREWIERRRCIELGSGTGALAIFLRKAMNLDITTSDYNDQEIEDNIAYNSTTNGITPALPHIKHSWGDAFPIPNPDWDLI 151 (244)
Q Consensus 72 ~~~~~~~~~VLdlG~G~G~~~~~~a~~~~~~v~~~D~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fD~I 151 (244)
+....++++||=||+|--.-++..+.....+|+.+.-+.+...+.+......... ..... ..+.+ .......+|+|
T Consensus 12 ~~~~~~~k~vlIlGaGG~arai~~aL~~~~~i~I~nR~~~ka~~l~~~~~~~~~~-~~~~~--~~~~~-~~~~~~~~dli 87 (177)
T d1nvta1 12 EIGRVKDKNIVIYGAGGAARAVAFELAKDNNIIIANRTVEKAEALAKEIAEKLNK-KFGEE--VKFSG-LDVDLDGVDII 87 (177)
T ss_dssp HHCCCCSCEEEEECCSHHHHHHHHHHTSSSEEEEECSSHHHHHHHHHHHHHHHTC-CHHHH--EEEEC-TTCCCTTCCEE
T ss_pred hCCCcCCCEEEEECCcHHHHHHHHHHccccceeeehhhhhHHHHHHHHHHHhhch-hhhhh--hhhhh-hhhccchhhhh
Confidence 3344688999999987443344443333558999988876543333322211111 00111 22222 22223467888
Q ss_pred EEcccc
Q 026036 152 LASDIL 157 (244)
Q Consensus 152 ~~~~~l 157 (244)
+..-++
T Consensus 88 In~tp~ 93 (177)
T d1nvta1 88 INATPI 93 (177)
T ss_dssp EECSCT
T ss_pred ccCCcc
Confidence 886665
|