Citrus Sinensis ID: 026043

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240----
Protein Sequence
MGRGKVELKRIENKINRQVTFAKRRNGLLKKAYELSVLCDAEVALIIFSSRGKLYEFCSSPSMHKTLEKYERCSYGTLQANHQSAKETQASYEEYIKLKEKHEALQHLQRQFFGEDLGRLGLEELEQLERQLGSSLGRVRSLKTRNQLDKLSELQRKEEMLLEANNILSMKLEEINAARRSHPWAAEEQNITYSNQPAHSEGSFGHLHSNGTLHLGHNPGVTAHERTVATSEQDVHSLIPGWML
Secondary Structure (PSIPRED)
ccccccHHHHccccccccccccccccccHHHHHHHHHHHccccEEEEEccccccccccccccHHHHHHHHHHccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc
Secondary Structure Prediction (SSPRO)
cccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHccEEEEEEEcccccEEEEEccHHHHHHHHHHHHHcccccHccccccHHHccHHHHHHHHHHHHHHHHHHHHHHHccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccccccccccccccccccccccEcccccccccccccccccccccccccccccc
Coil and Loop (DISEMBL)
MGRGKVELKRIENKINRQVTFAKRRNGLLKKAYELSVLCDAEVALIIFSSRgklyefcsspsmhktlekyercsygtlqanhqSAKETQASYEEYIKLKEKHEALQHLQRQFFGEDLGRLGLEELEQLERQLGSslgrvrslktrNQLDKLSELQRKEEMLLEANNILSMKLEEINAArrshpwaaeeqnitysnqpahsegsfghlhsngtlhlghnpgvtahertvatseqdvhslipgwml
Flexible Loop (DISEMBL)
mgrgkvelkrienkinrqvtfakrrngLLKKAYELSVLCDAEVALIIFSSRGKLYEFCSSPSMHKTLEKYERCSYGTLQANHQSAKETQASYEEYIKLKEKHEALQHLQRQFFGEDLGRLGLEELEQLERQLgsslgrvrslktrnqldklselqRKEEMLLEANNILSMKLEEINAARRSHPWAAEEQNITYSNQPAHSEGSFGHLHSNGTLHLGHNPGVTAHERTVatseqdvhslipgwml
Low Complexity Region (SEG)
MGRGKVELKRIENKINRQVTFAKRRNGLLKKAYELSVLCDAEVALIIFSSRGKLYEFCSSPSMHKTLEKYERCSYGTLQANHQSAKETQASYEEYIKLKEKHEALQHLQRQFFgedlgrlgleeleqlerqlgsslGRVRSLKTRNQLDKLSELQRKEEMLLEANNILSMKLEEINAARRSHPWAAEEQNITYSNQPAHSEGSFGHLHSNGTLHLGHNPGVTAHERTVATSEQDVHSLIPGWML
Disordered region (IsUnstruct)
*************KINRQVTFAKRRNGLLKKAYELSVLCDAEVALIIFSSRGKLYEFCSSPSMHKTLEKYERCSYGTL***************EYIKLKEKHEALQHLQRQFFGEDLGRLGL**************************************************************************************************************************
Disordered Region (DISOPRED)
MGRGKVELKRIENKINRQVTFAKRRNGLLKKAYELSVLCDAEVALIIFSSRGKLYEFCSSPSMHKTLEKYER********************EEYIKLKEKHEALQHLQRQFFGEDLGRLGLEELEQLERQLGSSLGRVRSLKTRNQLDKLSELQRKEEMLLEANNILS******************************************TLHLG*********************LIPGWML
Disordered Region (DISEMBL)
MGRGKVELKRIENKINRQVTFAKRRNGLLKKAYELSVLCDAEVALIIFSSRGKLYEFCSSPSMHKTLEKYERCSYGTL***********ASYEEYIKLKEKHEALQHLQRQFFGEDLGRLGLEELEQLERQLGSSLGRVRSLKTRNQLDKLSELQRKEEMLLEANNILSMKLEEINAARRSHPWAAEEQNITYSNQPAHSEGSFGHLHSNGTLHLGHNPGVTAHERTVATSEQDVHSLIPGWML
Disordered Region (DISPRO)
*****VELKRIENKINRQVTFAKRRNGLLKKAYELSVLCDAEVALIIFSSRGKLYEFCSSPSMHKTLEKYERCSYGTLQA**QS***TQASYEEYIKLKEKHEALQHLQRQFFGEDLGRLGLEELEQLERQLGSSLGRVRSLKTRNQLDKLSELQRKEEMLLEANNILSMKLEEINAARR**********************SFGHLHSNGTLHLGHNPG************************
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MGRGKVELKRIENKINRQVTFAKRRNGLLKKAYELSVLCDAEVALIIFSSRGKLYEFCSSPSMHKTLEKYERCSYGTLQANHQSAKETQASYEEYIKLKEKHEALQHLQRQFFGEDLGRLGLEExxxxxxxxxxxxxxxxxxxxxNQLDKLSELQRKEEMLLEANNILSMKLEEINAARRSHPWAAEEQNITYSNQPAHSEGSFGHLHSNGTLHLGHNPGVTAHERTVATSEQDVHSLIPGWML
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	244	2.2.26 [Sep-21-2011]
P29384	250	Developmental protein SEP	yes	no	1.0	0.976	0.58	7e-75
P29382	251	Developmental protein SEP	no	no	1.0	0.972	0.589	6e-74
Q39685	233	MADS-box protein CMB1 OS=	N/A	no	0.954	1.0	0.573	1e-69
P29383	258	Agamous-like MADS-box pro	no	no	0.983	0.930	0.549	4e-68
Q38694	250	Agamous-like MADS-box pro	N/A	no	0.979	0.956	0.552	1e-66
Q0J466	249	MADS-box transcription fa	yes	no	0.975	0.955	0.541	9e-62
P0C5B0	249	MADS-box transcription fa	N/A	no	0.975	0.955	0.541	9e-62
Q03489	241	Agamous-like MADS-box pro	N/A	no	0.971	0.983	0.528	2e-61
Q9SAR1	248	MADS-box transcription fa	yes	no	0.959	0.943	0.519	1e-59
O22456	251	Developmental protein SEP	no	no	0.713	0.693	0.644	3e-58

>sp|P29384|SEP2_ARATH Developmental protein SEPALLATA 2 OS=Arabidopsis thaliana GN=SEP2 PE=1 SV=1

 Score =  280 bits (716), Expect = 7e-75,   Method: Compositional matrix adjust.
 Identities = 145/250 (58%), Positives = 185/250 (74%), Gaps = 6/250 (2%)

Query: 1   MGRGKVELKRIENKINRQVTFAKRRNGLLKKAYELSVLCDAEVALIIFSSRGKLYEFCSS 60
           MGRG+VELKRIENKINRQVTFAKRRNGLLKKAYELSVLCDAEV+LI+FS+RGKLYEFCS+
Sbjct: 1   MGRGRVELKRIENKINRQVTFAKRRNGLLKKAYELSVLCDAEVSLIVFSNRGKLYEFCST 60

Query: 61  PSMHKTLEKYERCSYGTLQANHQSAKETQASYEEYIKLKEKHEALQHLQRQFFGEDLGRL 120
            +M KTLE+Y++CSYG+++ N++ AKE + SY EY+KLK ++E LQ  QR   GEDLG L
Sbjct: 61  SNMLKTLERYQKCSYGSIEVNNKPAKELENSYREYLKLKGRYENLQRQQRNLLGEDLGPL 120

Query: 121 GLEELEQLERQLGSSLGRVRSLKTRNQLDKLSELQRKEEMLLEANNILSMKLEEINAARR 180
             +ELEQLERQL  SL +VR +KT+  LD+LS+LQ KE +LL+AN  LSMKLE++   R 
Sbjct: 121 NSKELEQLERQLDGSLKQVRCIKTQYMLDQLSDLQGKEHILLDANRALSMKLEDMIGVRH 180

Query: 181 SH---PW-AAEEQNITYSNQPAHSEGSFGHLHSNGTLHLGHNPGVTAHER--TVATSEQD 234
            H    W   ++QNI Y +  AHS+G +  L  + TL +G++  V + +   TV    Q 
Sbjct: 181 HHIGGGWEGGDQQNIAYGHPQAHSQGLYQSLECDPTLQIGYSHPVCSEQMAVTVQGQSQQ 240

Query: 235 VHSLIPGWML 244
            +  IPGWML
Sbjct: 241 GNGYIPGWML 250

Probable transcription factor. Functions with SEPALLATA1/AGL2 and SEPALLATA3/AGL9 to ensure proper development of petals, stamens and carpels and to prevent the indeterminate growth of the flower meristem. Forms an heterodimer via the K-box domain with AG, that could be involved in genes regulation during floral meristem development.
Arabidopsis thaliana (taxid: 3702)

>sp|P29382|SEP1_ARATH Developmental protein SEPALLATA 1 OS=Arabidopsis thaliana GN=SEP1 PE=1 SV=2

 Score =  277 bits (708), Expect = 6e-74,   Method: Compositional matrix adjust.
 Identities = 148/251 (58%), Positives = 186/251 (74%), Gaps = 7/251 (2%)

Query: 1   MGRGKVELKRIENKINRQVTFAKRRNGLLKKAYELSVLCDAEVALIIFSSRGKLYEFCSS 60
           MGRG+VELKRIENKINRQVTFAKRRNGLLKKAYELSVLCDAEVALIIFS+RGKLYEFCSS
Sbjct: 1   MGRGRVELKRIENKINRQVTFAKRRNGLLKKAYELSVLCDAEVALIIFSNRGKLYEFCSS 60

Query: 61  PSMHKTLEKYERCSYGTLQANHQSAKETQASYEEYIKLKEKHEALQHLQRQFFGEDLGRL 120
            +M KTL++Y++CSYG+++ N++ AKE + SY EY+KLK ++E LQ  QR   GEDLG L
Sbjct: 61  SNMLKTLDRYQKCSYGSIEVNNKPAKELENSYREYLKLKGRYENLQRQQRNLLGEDLGPL 120

Query: 121 GLEELEQLERQLGSSLGRVRSLKTRNQLDKLSELQRKEEMLLEANNILSMKLEEINAARR 180
             +ELEQLERQL  SL +VRS+KT+  LD+LS+LQ KE+MLLE N  L+MKL+++   R 
Sbjct: 121 NSKELEQLERQLDGSLKQVRSIKTQYMLDQLSDLQNKEQMLLETNRALAMKLDDMIGVRS 180

Query: 181 SH-----PWAAEEQNITYSNQPAHSEGSFGHLHSNGTLHLGHNPGVTAHERTVATSEQDV 235
            H      W   EQN+TY++  A S+G +  L  N TL +G++  V + + T  T  Q  
Sbjct: 181 HHMGGGGGWEGGEQNVTYAHHQAQSQGLYQPLECNPTLQMGYDNPVCSEQITATTQAQAQ 240

Query: 236 --HSLIPGWML 244
             +  IPGWML
Sbjct: 241 QGNGYIPGWML 251

Probable transcription factor. Functions with SEPALLATA2/AGL4 and SEPALLATA3/AGL9 to ensure proper development of petals, stamens and carpels, and to prevent the indeterminate growth of the flower meristem. Forms an heterodimer via the K-box domain with AGAMOUS, that could be involved in genes regulation during floral meristem development.

Arabidopsis thaliana (taxid: 3702)

>sp|Q39685|CMB1_DIACA MADS-box protein CMB1 OS=Dianthus caryophyllus GN=CMB1 PE=2 SV=1

 Score =  263 bits (671), Expect = 1e-69,   Method: Compositional matrix adjust.
 Identities = 140/244 (57%), Positives = 173/244 (70%), Gaps = 11/244 (4%)

Query: 1   MGRGKVELKRIENKINRQVTFAKRRNGLLKKAYELSVLCDAEVALIIFSSRGKLYEFCSS 60
           MGRG+VELKRIENKINRQVTFAKRRNGLLKKAYELSVLCDAEVALI+FS+RGKLYEFCS+
Sbjct: 1   MGRGRVELKRIENKINRQVTFAKRRNGLLKKAYELSVLCDAEVALIVFSNRGKLYEFCST 60

Query: 61  PSMHKTLEKYERCSYGTLQANHQSAKETQASYEEYIKLKEKHEALQHLQRQFFGEDLGRL 120
             M+KTLE+Y+RCSYG+L+ + Q +KET++SY+EY+KLK K + LQ   R   GEDLG L
Sbjct: 61  SCMNKTLERYQRCSYGSLETS-QPSKETESSYQEYLKLKAKVDVLQRSHRNLLGEDLGEL 119

Query: 121 GLEELEQLERQLGSSLGRVRSLKTRNQLDKLSELQRKEEMLLEANNILSMKLEEINAARR 180
             +ELEQLE QL  SL ++RS+KT++ LD+L++LQ+KEEML E+N  L  KLEE  A+ R
Sbjct: 120 STKELEQLEHQLDKSLRQIRSIKTQHMLDQLADLQKKEEMLFESNRALKTKLEESCASFR 179

Query: 181 SHPWAAEEQNITYSNQPAHSEGSFGHLHSNGTLHLGHNPGVTAHERTVATSEQDVHSLIP 240
            + W           QP         L  N  L +G+N   T  +    TS Q+VH    
Sbjct: 180 PN-WDVR--------QPGDGFFEPLPLPCNNNLQIGYNEA-TQDQMNATTSAQNVHGFAQ 229

Query: 241 GWML 244
           GWML
Sbjct: 230 GWML 233

Dianthus caryophyllus (taxid: 3570)

>sp|P29383|AGL3_ARATH Agamous-like MADS-box protein AGL3 OS=Arabidopsis thaliana GN=AGL3 PE=2 SV=2

 Score =  257 bits (657), Expect = 4e-68,   Method: Compositional matrix adjust.
 Identities = 144/262 (54%), Positives = 176/262 (67%), Gaps = 22/262 (8%)

Query: 1   MGRGKVELKRIENKINRQVTFAKRRNGLLKKAYELSVLCDAEVALIIFSSRGKLYEFCSS 60
           MGRGKVELKRIENKINRQVTFAKRRNGLLKKAYELSVLCDAE+AL+IFS+RGKLYEFCSS
Sbjct: 1   MGRGKVELKRIENKINRQVTFAKRRNGLLKKAYELSVLCDAEIALLIFSNRGKLYEFCSS 60

Query: 61  PS-MHKTLEKYERCSYGTLQANHQSAKETQASYEEYIKLKEKHEALQHLQRQFFGEDLGR 119
           PS M +T++KY + SY T+  N QSAK+ Q  Y++Y+KLK + E LQH QR   GE+L  
Sbjct: 61  PSGMARTVDKYRKHSYATMDPN-QSAKDLQDKYQDYLKLKSRVEILQHSQRHLLGEELSE 119

Query: 120 LGLEELEQLERQLGSSLGRVRSLKTRNQLDKLSELQRKEEMLLEANNILSMKLEEINAAR 179
           + + ELE LERQ+ +SL ++RS K R+ LD+LS+L+ KEEMLLE N  L  KLE+ +AA 
Sbjct: 120 MDVNELEHLERQVDASLRQIRSTKARSMLDQLSDLKTKEEMLLETNRDLRRKLEDSDAAL 179

Query: 180 RSHPW---AAEEQNITY----------SNQPAHSEGSFGHLHSNGTL----HLGHNPGVT 222
               W   AAE+Q              SN P    G F  L  N  L    H  HNP   
Sbjct: 180 TQSFWGSSAAEQQQQHQQQQQGMSSYQSNPPIQEAGFFKPLQGNVALQMSSHYNHNP--- 236

Query: 223 AHERTVATSEQDVHSLIPGWML 244
           A+    AT+ Q+V+   PGWM+
Sbjct: 237 ANATNSATTSQNVNGFFPGWMV 258

Probable transcription factor.

Arabidopsis thaliana (taxid: 3702)

>sp|Q38694|AGL9_ARADE Agamous-like MADS-box protein AGL9 homolog OS=Aranda deborah PE=2 SV=1

 Score =  252 bits (644), Expect = 1e-66,   Method: Compositional matrix adjust.
 Identities = 136/246 (55%), Positives = 174/246 (70%), Gaps = 7/246 (2%)

Query: 1   MGRGKVELKRIENKINRQVTFAKRRNGLLKKAYELSVLCDAEVALIIFSSRGKLYEFCSS 60
           MGRG+VELK IENKINRQVTFAKRR  LLKKAYELSVLCDAEVALIIFS+RGKLYEFCSS
Sbjct: 1   MGRGRVELKMIENKINRQVTFAKRRKRLLKKAYELSVLCDAEVALIIFSNRGKLYEFCSS 60

Query: 61  PSMHKTLEKYERCSYGTLQANHQSAKETQASYEEYIKLKEKHEALQHLQRQFFGEDLGRL 120
            SM KTLEKY++C++G+ ++   S +ETQ+S +EY+KLK + EALQ  QR   GEDLG L
Sbjct: 61  TSMLKTLEKYQKCNFGSPESTIIS-RETQSSQQEYLKLKNRVEALQRSQRNLLGEDLGPL 119

Query: 121 GLEELEQLERQLGSSLGRVRSLKTRNQLDKLSELQRKEEMLLEANNILSMKLEEINAARR 180
           G +ELEQLERQL SSL ++RS +T+  LD+L++LQR+E+ML EAN  L  + EE + A +
Sbjct: 120 GSKELEQLERQLDSSLRQIRSTRTQFMLDQLADLQRREQMLCEANKTLKRRFEESSQANQ 179

Query: 181 SHPW-AAEEQNITYSNQPA--HSEGSFGHLHSNGTLHLGHNPGVTAHERTVATSEQDVHS 237
              W  +    + Y  QPA  H E  +  L    TL +G++  +T    T +T     + 
Sbjct: 180 QQVWDPSNTHAVGYGRQPAQHHGEAFYHPLECEPTLQIGYHSDITMATATASTVN---NY 236

Query: 238 LIPGWM 243
           + PGW+
Sbjct: 237 MPPGWL 242

Probable transcription factor active in inflorescence development and floral organogenesis.

Aranda deborah (taxid: 29714)

>sp|Q0J466|MADS7_ORYSJ MADS-box transcription factor 7 OS=Oryza sativa subsp. japonica GN=MADS7 PE=1 SV=2

 Score =  236 bits (603), Expect = 9e-62,   Method: Compositional matrix adjust.
 Identities = 137/253 (54%), Positives = 171/253 (67%), Gaps = 15/253 (5%)

Query: 1   MGRGKVELKRIENKINRQVTFAKRRNGLLKKAYELSVLCDAEVALIIFSSRGKLYEFCSS 60
           MGRG+VELKRIENKINRQVTFAKRRNGLLKKAYELSVLCDAEVALIIFS+RGKLYEFCS+
Sbjct: 1   MGRGRVELKRIENKINRQVTFAKRRNGLLKKAYELSVLCDAEVALIIFSNRGKLYEFCST 60

Query: 61  PSMHKTLEKYERCSYGTLQANHQS--AKETQASYEEYIKLKEKHEALQHLQRQFFGEDLG 118
            SM KTLEKY++CSY   +   Q+  +++ +AS  EY+KLK + E LQ  QR   GEDL 
Sbjct: 61  QSMTKTLEKYQKCSYAGPETAVQNRESEQLKASRNEYLKLKARVENLQRTQRNLLGEDLD 120

Query: 119 RLGLEELEQLERQLGSSLGRVRSLKTRNQLDKLSELQRKEEMLLEANNILSMKLEEINAA 178
            LG++ELE LE+QL SSL  VR+ +T++ +D+L+ELQRKE+M+ EAN  L  KLEE N  
Sbjct: 121 SLGIKELESLEKQLDSSLKHVRTTRTKHLVDQLTELQRKEQMVSEANRCLRRKLEESNHV 180

Query: 179 RRSHPWAAEEQNITYS-----NQPAHSEGSFGH-LHSNG--TLHLGHNPGVTAHERTVAT 230
           R    W      I Y       QP H    F H L + G  TL +G+      HE   A 
Sbjct: 181 RGQQVWEQGCNLIGYERQPEVQQPLHGGNGFFHPLDAAGEPTLQIGY--PAEHHE---AM 235

Query: 231 SEQDVHSLIPGWM 243
           +   +++ +P W+
Sbjct: 236 NSACMNTYMPPWL 248

Probable transcription factor. May be involved in the control of flowering time.

Oryza sativa subsp. japonica (taxid: 39947)

>sp|P0C5B0|MADS7_ORYSI MADS-box transcription factor 7 OS=Oryza sativa subsp. indica GN=MADS7 PE=2 SV=2

 Score =  236 bits (603), Expect = 9e-62,   Method: Compositional matrix adjust.
 Identities = 137/253 (54%), Positives = 171/253 (67%), Gaps = 15/253 (5%)

Query: 1   MGRGKVELKRIENKINRQVTFAKRRNGLLKKAYELSVLCDAEVALIIFSSRGKLYEFCSS 60
           MGRG+VELKRIENKINRQVTFAKRRNGLLKKAYELSVLCDAEVALIIFS+RGKLYEFCS+
Sbjct: 1   MGRGRVELKRIENKINRQVTFAKRRNGLLKKAYELSVLCDAEVALIIFSNRGKLYEFCST 60

Query: 61  PSMHKTLEKYERCSYGTLQANHQS--AKETQASYEEYIKLKEKHEALQHLQRQFFGEDLG 118
            SM KTLEKY++CSY   +   Q+  +++ +AS  EY+KLK + E LQ  QR   GEDL 
Sbjct: 61  QSMTKTLEKYQKCSYAGPETAVQNRESEQLKASRNEYLKLKARVENLQRTQRNLLGEDLD 120

Query: 119 RLGLEELEQLERQLGSSLGRVRSLKTRNQLDKLSELQRKEEMLLEANNILSMKLEEINAA 178
            LG++ELE LE+QL SSL  VR+ +T++ +D+L+ELQRKE+M+ EAN  L  KLEE N  
Sbjct: 121 SLGIKELESLEKQLDSSLKHVRTTRTKHLVDQLTELQRKEQMVSEANRCLRRKLEESNHV 180

Query: 179 RRSHPWAAEEQNITYS-----NQPAHSEGSFGH-LHSNG--TLHLGHNPGVTAHERTVAT 230
           R    W      I Y       QP H    F H L + G  TL +G+      HE   A 
Sbjct: 181 RGQQVWEQGCNLIGYERQPEVQQPLHGGNGFFHPLDAAGEPTLQIGY--PAEHHE---AM 235

Query: 231 SEQDVHSLIPGWM 243
           +   +++ +P W+
Sbjct: 236 NSACMNTYMPPWL 248

Probable transcription factor.

Oryza sativa subsp. indica (taxid: 39946)

>sp|Q03489|AGL9_PETHY Agamous-like MADS-box protein AGL9 homolog OS=Petunia hybrida GN=FBP2 PE=1 SV=2

 Score =  235 bits (600), Expect = 2e-61,   Method: Compositional matrix adjust.
 Identities = 130/246 (52%), Positives = 166/246 (67%), Gaps = 9/246 (3%)

Query: 1   MGRGKVELKRIENKINRQVTFAKRRNGLLKKAYELSVLCDAEVALIIFSSRGKLYEFCSS 60
           MGRG+VELKRIENKINRQVTFAKRRNGLLKKAYELSVLCDAEVALIIFS+RGKLYEFCSS
Sbjct: 1   MGRGRVELKRIENKINRQVTFAKRRNGLLKKAYELSVLCDAEVALIIFSNRGKLYEFCSS 60

Query: 61  PSMHKTLEKYERCSYGTLQANHQSAKETQ-ASYEEYIKLKEKHEALQHLQRQFFGEDLGR 119
            SM KTLE+Y++C+YG  + N  + +  + +S +EY+KLK ++EALQ  QR   GEDLG 
Sbjct: 61  SSMLKTLERYQKCNYGAPETNISTREALEISSQQEYLKLKARYEALQRSQRNLLGEDLGP 120

Query: 120 LGLEELEQLERQLGSSLGRVRSLKTRNQLDKLSELQRKEEMLLEANNILSMKLEEINAAR 179
           L  +ELE LERQL  SL ++RS +T+  LD+L +LQRKE  L EAN  L  +L E   + 
Sbjct: 121 LNSKELESLERQLDMSLKQIRSTRTQLMLDQLQDLQRKEHALNEANRTLKQRLME--GST 178

Query: 180 RSHPWAAEEQNITYSNQPAHSEGS--FGHLHSNGTLHLGHNPGVTAHERTVATSEQDVHS 237
            +  W    Q++ Y  Q   ++G   F  L    TL +G+         TV  +   V++
Sbjct: 179 LNLQWQQNAQDVGYGRQATQTQGDGFFHPLECEPTLQIGYQNDPI----TVGGAGPSVNN 234

Query: 238 LIPGWM 243
            + GW+
Sbjct: 235 YMAGWL 240

Probable transcription factor.

Petunia hybrida (taxid: 4102)

>sp|Q9SAR1|MADS8_ORYSJ MADS-box transcription factor 8 OS=Oryza sativa subsp. japonica GN=MADS8 PE=1 SV=1

 Score =  229 bits (585), Expect = 1e-59,   Method: Compositional matrix adjust.
 Identities = 133/256 (51%), Positives = 163/256 (63%), Gaps = 22/256 (8%)

Query: 1   MGRGKVELKRIENKINRQVTFAKRRNGLLKKAYELSVLCDAEVALIIFSSRGKLYEFCSS 60
           MGRG+VELKRIENKINRQVTFAKRRNGLLKKAYELSVLCDAEVALIIFS+RGKLYEFCS 
Sbjct: 1   MGRGRVELKRIENKINRQVTFAKRRNGLLKKAYELSVLCDAEVALIIFSNRGKLYEFCSG 60

Query: 61  PSMHKTLEKYERCSYGTLQANHQSAKE--TQASYEEYIKLKEKHEALQHLQRQFFGEDLG 118
            SM +TLE+Y++ SYG      Q+ +    Q+S  EY+KLK + E LQ  QR   GEDLG
Sbjct: 61  QSMTRTLERYQKFSYGGPDTAIQNKENELVQSSRNEYLKLKARVENLQRTQRNLLGEDLG 120

Query: 119 RLGLEELEQLERQLGSSLGRVRSLKTRNQLDKLSELQRKEEMLLEANNILSMKLEEINAA 178
            LG++ELEQLE+QL SSL  +RS +T++ LD+L++LQR+E+ML EAN  L  KLEE N  
Sbjct: 121 TLGIKELEQLEKQLDSSLRHIRSTRTQHMLDQLTDLQRREQMLCEANKCLRRKLEESNQL 180

Query: 179 RRSHPWAAEEQNITYSNQPAHS------EGSFGHLHS-----NGTLHLGHNPGVTAHERT 227
                W      + Y  Q  H+       G  G  HS       TL +G  P        
Sbjct: 181 -HGQVWEHGATLLGYERQSPHAVQQVPPHGGNGFFHSLEAAAEPTLQIGFTPE------- 232

Query: 228 VATSEQDVHSLIPGWM 243
              +   V + +P W+
Sbjct: 233 -QMNNSCVTAFMPTWL 247

Probable transcription factor. May be involved in the control of flowering time.

Oryza sativa subsp. japonica (taxid: 39947)

>sp|O22456|SEP3_ARATH Developmental protein SEPALLATA 3 OS=Arabidopsis thaliana GN=SEP3 PE=1 SV=1

 Score =  224 bits (572), Expect = 3e-58,   Method: Compositional matrix adjust.
 Identities = 114/177 (64%), Positives = 141/177 (79%), Gaps = 3/177 (1%)

Query: 1   MGRGKVELKRIENKINRQVTFAKRRNGLLKKAYELSVLCDAEVALIIFSSRGKLYEFCSS 60
           MGRG+VELKRIENKINRQVTFAKRRNGLLKKAYELSVLCDAEVALIIFS+RGKLYEFCSS
Sbjct: 1   MGRGRVELKRIENKINRQVTFAKRRNGLLKKAYELSVLCDAEVALIIFSNRGKLYEFCSS 60

Query: 61  PSMHKTLEKYERCSYGTLQANHQSAKETQ---ASYEEYIKLKEKHEALQHLQRQFFGEDL 117
            SM +TLE+Y++C+YG  + N  S +      +S +EY+KLKE+++ALQ  QR   GEDL
Sbjct: 61  SSMLRTLERYQKCNYGAPEPNVPSREALAVELSSQQEYLKLKERYDALQRTQRNLLGEDL 120

Query: 118 GRLGLEELEQLERQLGSSLGRVRSLKTRNQLDKLSELQRKEEMLLEANNILSMKLEE 174
           G L  +ELE LERQL SSL ++R+L+T+  LD+L++LQ KE ML E N  L ++L +
Sbjct: 121 GPLSTKELESLERQLDSSLKQIRALRTQFMLDQLNDLQSKERMLTETNKTLRLRLAD 177

Probable transcription factor active in inflorescence development and floral organogenesis. Functions with SEPALLATA1/AGL2 and SEPALLATA2/AGL4 to ensure proper development of petals, stamens and carpels and to prevent the indeterminate growth of the flower meristem. Interacts with APETALA1, AGAMOUS or APETALA3/PISTILLATA to form complexes, that could be involved in genes regulation during floral meristem development.

Arabidopsis thaliana (taxid: 3702)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	244
388508480	250	unknown [Medicago truncatula]	0.995	0.972	0.617	2e-80
187942344	245	MADS1 [Carica papaya]	0.987	0.983	0.629	2e-78
90657552	248	hypothetical protein [Cleome spinosa]	0.995	0.979	0.614	2e-78
90657597	248	hypothetical protein [Cleome spinosa]	0.991	0.975	0.624	2e-78
356551295	248	PREDICTED: developmental protein SEPALLA	0.995	0.979	0.606	8e-78
359472558	243	PREDICTED: MADS-box protein CMB1 isoform	0.991	0.995	0.628	1e-77
351723249	248	MADS-box protein [Glycine max] gi|738101	0.995	0.979	0.606	1e-77
34452083	246	MADS-box protein 12 [Petunia x hybrida]	1.0	0.991	0.593	3e-77
163929884	243	SEPALLATA1 homolog [Citrus unshiu]	0.991	0.995	0.612	3e-77
22091481	246	MADS box transcription factor [Daucus ca	0.991	0.983	0.616	9e-77

>gi|388508480|gb|AFK42306.1| unknown [Medicago truncatula]

 Score =  304 bits (778), Expect = 2e-80,   Method: Compositional matrix adjust.
 Identities = 155/251 (61%), Positives = 189/251 (75%), Gaps = 8/251 (3%)

Query: 1   MGRGKVELKRIENKINRQVTFAKRRNGLLKKAYELSVLCDAEVALIIFSSRGKLYEFCSS 60
           MGRG+VELKRIENKINR+VTFAKRRNGLLKKAYELSVLCDAEVALIIFS+RGKLYE CSS
Sbjct: 1   MGRGRVELKRIENKINRRVTFAKRRNGLLKKAYELSVLCDAEVALIIFSNRGKLYELCSS 60

Query: 61  PSMHKTLEKYERCSYGTLQANHQSAKETQASYEEYIKLKEKHEALQHLQRQFFGEDLGRL 120
           PSM KTL++Y++CSYG ++ N + AKE ++SY EY+KLK + E+LQ  QR   GEDLG L
Sbjct: 61  PSMLKTLDRYQKCSYGAVEVN-KPAKELESSYREYLKLKARFESLQRTQRNLLGEDLGPL 119

Query: 121 GLEELEQLERQLGSSLGRVRSLKTRNQLDKLSELQRKEEMLLEANNILSMKLEEINAARR 180
           G ++LEQLERQL SSL +VRS KT+  LD+L++LQ KE ML+EAN  LSMKLEEIN   R
Sbjct: 120 GTKDLEQLERQLDSSLKQVRSTKTQFMLDQLADLQNKEHMLVEANRSLSMKLEEININSR 179

Query: 181 S---HPWAAEEQNITYSNQPAHSEGSFGHLHSNGTLHLG----HNPGVTAHERTVATSEQ 233
           +     W A +Q++ Y NQ AHS+  F  L  N TL +G    ++P V + + T  T  Q
Sbjct: 180 NQYRQTWEAGDQSMAYGNQNAHSQSFFQPLECNPTLQIGTDYRYSPPVASDQLTATTQAQ 239

Query: 234 DVHSLIPGWML 244
            V+  IPGWML
Sbjct: 240 QVNGFIPGWML 250

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|187942344|gb|ACD39982.1| MADS1 [Carica papaya]

 Score =  298 bits (762), Expect = 2e-78,   Method: Compositional matrix adjust.
 Identities = 156/248 (62%), Positives = 189/248 (76%), Gaps = 7/248 (2%)

Query: 1   MGRGKVELKRIENKINRQVTFAKRRNGLLKKAYELSVLCDAEVALIIFSSRGKLYEFCSS 60
           MGRG+VELKRIENKINRQVTFAKRRNGLLKKAYELSVLCDAEVALIIFS+RGKLYEFCSS
Sbjct: 1   MGRGRVELKRIENKINRQVTFAKRRNGLLKKAYELSVLCDAEVALIIFSNRGKLYEFCSS 60

Query: 61  PSMHKTLEKYERCSYGTLQANHQSAKETQASYEEYIKLKEKHEALQHLQRQFFGEDLGRL 120
            SM KTL++Y++CSYG ++ + + AKE ++SY EY+KLK + EALQ  QR   GEDLG L
Sbjct: 61  SSMLKTLDRYQKCSYGAVEVS-KPAKELESSYREYLKLKTRFEALQRTQRNLLGEDLGPL 119

Query: 121 GLEELEQLERQLGSSLGRVRSLKTRNQLDKLSELQRKEEMLLEANNILSMKLEEINAARR 180
             +ELEQLERQL SSL  VRS KT+  LD+L++LQ KE MLLEAN  L++KL+EI+A  R
Sbjct: 120 NTKELEQLERQLESSLKHVRSTKTQYMLDQLTDLQNKEHMLLEANRALTIKLDEISA--R 177

Query: 181 SH---PWAAEEQNITYSNQPAHSEGSFGHLHSNGTLHLGHNPGVTAHERTVATSE-QDVH 236
           +H    W   EQN++Y +Q A S+G F  L  N TL +G+NP  +      ATS+ Q V+
Sbjct: 178 NHLRVAWEGSEQNVSYGHQHAQSQGLFQPLECNPTLQIGYNPVGSDQMTAAATSQGQQVN 237

Query: 237 SLIPGWML 244
             IPGWML
Sbjct: 238 GFIPGWML 245

Source: Carica papaya

Species: Carica papaya

Genus: Carica

Family: Caricaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|90657552|gb|ABD96852.1| hypothetical protein [Cleome spinosa]

 Score =  297 bits (761), Expect = 2e-78,   Method: Compositional matrix adjust.
 Identities = 153/249 (61%), Positives = 185/249 (74%), Gaps = 6/249 (2%)

Query: 1   MGRGKVELKRIENKINRQVTFAKRRNGLLKKAYELSVLCDAEVALIIFSSRGKLYEFCSS 60
           MGRG+VELKRIENKINRQVTFAKRRNGLLKKAYELSVLCDAEVALIIFS+RGKLYEFCSS
Sbjct: 1   MGRGRVELKRIENKINRQVTFAKRRNGLLKKAYELSVLCDAEVALIIFSNRGKLYEFCSS 60

Query: 61  PSMHKTLEKYERCSYGTLQANHQSAKETQASYEEYIKLKEKHEALQHLQRQFFGEDLGRL 120
           P+M KTLE+Y++CSYG+++ N++ AKE + SY EY+KLK + E LQ  QR   GEDLG L
Sbjct: 61  PNMLKTLERYQKCSYGSIEVNNKPAKELENSYREYLKLKSRFEGLQRQQRNLLGEDLGPL 120

Query: 121 GLEELEQLERQLGSSLGRVRSLKTRNQLDKLSELQRKEEMLLEANNILSMKLEEINAARR 180
             +ELEQ+ERQL  SL +VRS+KT+  +D+LSELQ +E+MLLEAN  LSMKL+E+  AR 
Sbjct: 121 NSKELEQIERQLDGSLKQVRSIKTQYMIDQLSELQSREQMLLEANRALSMKLDEMVGART 180

Query: 181 SH---PWAAEEQNITYSNQPAHSEGSFGHLHSNGTLHLGHNPGVTAHERTVAT--SEQDV 235
            H    W   EQN+TY +QP   +G F  L  N TL +G+N      + T  T    Q  
Sbjct: 181 HHIGGGWEGSEQNVTYGHQP-QPQGLFQPLECNPTLQIGYNNPECPEQMTATTQAPAQAG 239

Query: 236 HSLIPGWML 244
           +  IPGWML
Sbjct: 240 NGYIPGWML 248

Source: Cleome spinosa

Species: Cleome spinosa

Genus: Cleome

Family: Cleomaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|90657597|gb|ABD96896.1| hypothetical protein [Cleome spinosa]

 Score =  297 bits (761), Expect = 2e-78,   Method: Compositional matrix adjust.
 Identities = 156/250 (62%), Positives = 191/250 (76%), Gaps = 8/250 (3%)

Query: 1   MGRGKVELKRIENKINRQVTFAKRRNGLLKKAYELSVLCDAEVALIIFSSRGKLYEFCSS 60
           MGRG+VELKRIENKINRQVTFAKRRNGLLKKAYELSVLCDAEVALIIFS+RGKLYEFCSS
Sbjct: 1   MGRGRVELKRIENKINRQVTFAKRRNGLLKKAYELSVLCDAEVALIIFSNRGKLYEFCSS 60

Query: 61  PSMHKTLEKYERCSYGTLQANHQSAKETQASYEEYIKLKEKHEALQHLQRQFFGEDLGRL 120
            +M KTLE+Y++CSYG+++ N++ AKE + SY EY+KLK ++E L   QR   GEDLG L
Sbjct: 61  SNMLKTLERYQKCSYGSIEVNNRPAKELENSYREYLKLKSRYEGLHRQQRNLLGEDLGPL 120

Query: 121 GLEELEQLERQLGSSLGRVRSLKTRNQLDKLSELQRKEEMLLEANNILSMKLEEINAARR 180
             +ELEQLERQL SSL +VRS+KT++ LD+LS+LQ KE+MLLEAN  LSMKLEE+  AR 
Sbjct: 121 NSKELEQLERQLDSSLKQVRSIKTQSMLDELSDLQNKEQMLLEANRALSMKLEEMVGART 180

Query: 181 SH---PWAAEEQNITYSNQPAHSEGSFGHLHSNGTLHLGHNPGVTAHERTVATSEQDVHS 237
                 W   EQN++Y +Q A S+G F  L  N TL +G+N  V + E+  AT++  V +
Sbjct: 181 HQFGGAWEGSEQNVSYGHQ-AQSQGLFQPLECNPTLQIGYNNPVCS-EQMAATTQAPVQA 238

Query: 238 ---LIPGWML 244
               IPGWML
Sbjct: 239 GNGYIPGWML 248

Source: Cleome spinosa

Species: Cleome spinosa

Genus: Cleome

Family: Cleomaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356551295|ref|XP_003544012.1| PREDICTED: developmental protein SEPALLATA 2-like [Glycine max]

 Score =  295 bits (756), Expect = 8e-78,   Method: Compositional matrix adjust.
 Identities = 151/249 (60%), Positives = 186/249 (74%), Gaps = 6/249 (2%)

Query: 1   MGRGKVELKRIENKINRQVTFAKRRNGLLKKAYELSVLCDAEVALIIFSSRGKLYEFCSS 60
           MGRG+VELKRIENKINRQVTFAKRRNGLLKKAYELSVLCDAEVALIIFS+RGKLYEFCS+
Sbjct: 1   MGRGRVELKRIENKINRQVTFAKRRNGLLKKAYELSVLCDAEVALIIFSTRGKLYEFCST 60

Query: 61  PSMHKTLEKYERCSYGTLQANHQSAKETQASYEEYIKLKEKHEALQHLQRQFFGEDLGRL 120
            SM KTLE+Y++CSYG ++ + +  KE ++SY EY+KLK + E+LQ  QR   GEDLG L
Sbjct: 61  NSMLKTLERYQKCSYGAVEVS-KPGKELESSYREYLKLKARFESLQRTQRNLLGEDLGPL 119

Query: 121 GLEELEQLERQLGSSLGRVRSLKTRNQLDKLSELQRKEEMLLEANNILSMKLEEINAARR 180
             ++LEQLERQL SSL +VRS KT+  LD+L++LQ KE ML+EAN  L+MKLEEIN+  +
Sbjct: 120 NTKDLEQLERQLDSSLKQVRSTKTQFMLDQLADLQNKEHMLVEANRSLTMKLEEINSRNQ 179

Query: 181 -SHPWAAEEQNITYSNQPAHSEGSFGHLHSNGTLHLG----HNPGVTAHERTVATSEQDV 235
               W A EQ+++Y  Q AHS+G F  L  N TL +G    +NP  +  +    T  Q V
Sbjct: 180 YRQTWEAGEQSMSYGTQNAHSQGFFQPLECNPTLQIGSDYRYNPEASEQQLAATTQAQQV 239

Query: 236 HSLIPGWML 244
           +  IPGWML
Sbjct: 240 NGFIPGWML 248

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|359472558|ref|XP_002263410.2| PREDICTED: MADS-box protein CMB1 isoform 1 [Vitis vinifera] gi|297738118|emb|CBI27319.3| unnamed protein product [Vitis vinifera]

 Score =  295 bits (755), Expect = 1e-77,   Method: Compositional matrix adjust.
 Identities = 154/245 (62%), Positives = 184/245 (75%), Gaps = 3/245 (1%)

Query: 1   MGRGKVELKRIENKINRQVTFAKRRNGLLKKAYELSVLCDAEVALIIFSSRGKLYEFCSS 60
           MGRGKVELKRIENKINRQVTFAKRRNGLLKKAYELSVLCDAEVALIIFS+RGKLYEFCS 
Sbjct: 1   MGRGKVELKRIENKINRQVTFAKRRNGLLKKAYELSVLCDAEVALIIFSNRGKLYEFCSG 60

Query: 61  PSMHKTLEKYERCSYGTLQANHQSAKETQASYEEYIKLKEKHEALQHLQRQFFGEDLGRL 120
            SM +TLE+Y+RCSY  L+A+ Q AKETQ SY+EY+KLK K E LQ  QR F GEDLG L
Sbjct: 61  SSMPETLERYQRCSYSALEAS-QPAKETQNSYQEYLKLKSKVEVLQRTQRNFLGEDLGHL 119

Query: 121 GLEELEQLERQLGSSLGRVRSLKTRNQLDKLSELQRKEEMLLEANNILSMKLEEINA-AR 179
           G +ELEQLE QL  SL ++RS KT+  LD+LS+LQRKE++L+EANN L  KL E +A + 
Sbjct: 120 GTKELEQLEHQLDKSLKQIRSTKTQFMLDQLSDLQRKEQILMEANNALRRKLGESSAESG 179

Query: 180 RSHPWAAEEQNITYSNQPAHSEGSFGHLHSNGTLHLGHNPGVTAHERTVATSEQDVHSLI 239
               W A   N+ Y+ +P  SE  F  L  + TL +G+NP V   E   A++ Q+V+  I
Sbjct: 180 LGSTWEAAAHNLPYNREPVQSEDFFEPLQCDSTLQIGYNP-VLRVEMNGASTTQNVNGFI 238

Query: 240 PGWML 244
           PGWM+
Sbjct: 239 PGWMV 243

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|351723249|ref|NP_001238296.1| MADS-box protein [Glycine max] gi|73810196|gb|AAZ86071.1| MADS-box protein [Glycine max]

 Score =  295 bits (754), Expect = 1e-77,   Method: Compositional matrix adjust.
 Identities = 151/249 (60%), Positives = 185/249 (74%), Gaps = 6/249 (2%)

Query: 1   MGRGKVELKRIENKINRQVTFAKRRNGLLKKAYELSVLCDAEVALIIFSSRGKLYEFCSS 60
           MGRG+VELKRIENKINRQVTFAKRRNGLLKKAYELSVLCDAEVALIIFS+RGKLYEFCS+
Sbjct: 1   MGRGRVELKRIENKINRQVTFAKRRNGLLKKAYELSVLCDAEVALIIFSTRGKLYEFCST 60

Query: 61  PSMHKTLEKYERCSYGTLQANHQSAKETQASYEEYIKLKEKHEALQHLQRQFFGEDLGRL 120
            SM KTLE+Y++CSYG ++ + +  KE ++SY EY+KLK + E+LQ  QR   GEDLG L
Sbjct: 61  NSMLKTLERYQKCSYGAVEVS-KPGKELESSYREYLKLKARFESLQRTQRNLLGEDLGPL 119

Query: 121 GLEELEQLERQLGSSLGRVRSLKTRNQLDKLSELQRKEEMLLEANNILSMKLEEINAARR 180
             ++LEQLERQL SSL +VRS KT+  LD+L++LQ KE ML+EAN  L+MKLEEIN+  +
Sbjct: 120 NTKDLEQLERQLDSSLKQVRSTKTQFMLDQLADLQNKEHMLVEANRSLTMKLEEINSRNQ 179

Query: 181 -SHPWAAEEQNITYSNQPAHSEGSFGHLHSNGTLHLG----HNPGVTAHERTVATSEQDV 235
               W A EQ++ Y  Q AHS+G F  L  N TL +G    +NP  +  +    T  Q V
Sbjct: 180 YRQTWEAGEQSMPYGTQNAHSQGFFQPLECNPTLQIGSDYRYNPEASEQQLAATTQAQQV 239

Query: 236 HSLIPGWML 244
           +  IPGWML
Sbjct: 240 NGFIPGWML 248

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|34452083|gb|AAQ72498.1| MADS-box protein 12 [Petunia x hybrida]

 Score =  294 bits (752), Expect = 3e-77,   Method: Compositional matrix adjust.
 Identities = 146/246 (59%), Positives = 184/246 (74%), Gaps = 2/246 (0%)

Query: 1   MGRGKVELKRIENKINRQVTFAKRRNGLLKKAYELSVLCDAEVALIIFSSRGKLYEFCSS 60
           MGRG+VELKRIENKINRQVTFAKRRNGLLKKAYELSVLCDAEVALIIFS+RGKLYEFCSS
Sbjct: 1   MGRGRVELKRIENKINRQVTFAKRRNGLLKKAYELSVLCDAEVALIIFSNRGKLYEFCSS 60

Query: 61  PSMHKTLEKYERCSYGTLQANHQSAKETQASYEEYIKLKEKHEALQHLQRQFFGEDLGRL 120
            +M K+LE+Y++CSYGTL+ N  S    Q +Y EY+KLK K+E+LQ  QR   GEDLG L
Sbjct: 61  NNMFKSLERYQKCSYGTLEVNQSSKDNEQNNYREYLKLKAKYESLQRYQRHLLGEDLGPL 120

Query: 121 GLEELEQLERQLGSSLGRVRSLKTRNQLDKLSELQRKEEMLLEANNILSMKLEEINAARR 180
            +++LE LE QL +SL  +RS +T+  LD+LS+LQ KE++ +EAN +L  KLEEI A   
Sbjct: 121 NIDDLENLEVQLDTSLKHIRSTRTQLMLDQLSDLQTKEKLWVEANKVLERKLEEIYAENS 180

Query: 181 -SHPWAAEEQNITYSNQ-PAHSEGSFGHLHSNGTLHLGHNPGVTAHERTVATSEQDVHSL 238
               W   EQ++TY +Q  A S+G F  L  N TL +G+NP  T+ + T  T+ Q+V+ +
Sbjct: 181 LQQSWGGGEQSVTYGHQHNAQSQGFFQPLECNSTLQIGYNPITTSRQITAVTNAQNVNGM 240

Query: 239 IPGWML 244
           +PGWML
Sbjct: 241 VPGWML 246

Source: Petunia x hybrida

Species: Petunia x hybrida

Genus: Petunia

Family: Solanaceae

Order: Solanales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|163929884|dbj|BAF95941.1| SEPALLATA1 homolog [Citrus unshiu]

 Score =  293 bits (751), Expect = 3e-77,   Method: Compositional matrix adjust.
 Identities = 150/245 (61%), Positives = 184/245 (75%), Gaps = 3/245 (1%)

Query: 1   MGRGKVELKRIENKINRQVTFAKRRNGLLKKAYELSVLCDAEVALIIFSSRGKLYEFCSS 60
           MGRG+VELKRIENKINRQVTFAKRRNGLLKKAYELSVLCDAEVALIIFS+RGKLYEFCSS
Sbjct: 1   MGRGRVELKRIENKINRQVTFAKRRNGLLKKAYELSVLCDAEVALIIFSNRGKLYEFCSS 60

Query: 61  PSMHKTLEKYERCSYGTLQANHQSAKETQASYEEYIKLKEKHEALQHLQRQFFGEDLGRL 120
            SM KTLE+Y++CSYG ++ N + AKE ++SY EY+KLK + E+LQ  QR   GEDLG L
Sbjct: 61  SSMLKTLERYQKCSYGAVEVN-KPAKELESSYREYLKLKTRFESLQRTQRNLLGEDLGPL 119

Query: 121 GLEELEQLERQLGSSLGRVRSLKTRNQLDKLSELQRKEEMLLEANNILSMKLEEINAARR 180
             +ELEQLERQL SSL  VRS KT+  LD+LS+LQ KE++LL+ N  L++KL+EINA  +
Sbjct: 120 NSKELEQLERQLESSLKHVRSTKTQYMLDQLSDLQNKEQLLLDTNRALTIKLDEINAKTQ 179

Query: 181 SHP-WAAEEQNITYSNQPAHSEGSFGHLHSNGTLHLGHNPGVTAHERTVATSEQDVHSLI 239
             P W   EQ + Y+ Q A ++G F  +  N TL +G+NP   + + T  +  Q V   I
Sbjct: 180 LRPSWEGGEQQLGYNPQHAQTQGLFQPIECNPTLQIGYNPSC-SDQMTATSHAQQVSGFI 238

Query: 240 PGWML 244
           PGWML
Sbjct: 239 PGWML 243

Source: Citrus unshiu

Species: Citrus unshiu

Genus: Citrus

Family: Rutaceae

Order: Sapindales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|22091481|emb|CAC81072.1| MADS box transcription factor [Daucus carota subsp. sativus]

 Score =  292 bits (747), Expect = 9e-77,   Method: Compositional matrix adjust.
 Identities = 153/248 (61%), Positives = 184/248 (74%), Gaps = 6/248 (2%)

Query: 1   MGRGKVELKRIENKINRQVTFAKRRNGLLKKAYELSVLCDAEVALIIFSSRGKLYEFCSS 60
           MGRGKVELKRIENKINRQVTFAKRRNGLLKKAYELSVLCDAEVALIIFS+RGKLYEFCS+
Sbjct: 1   MGRGKVELKRIENKINRQVTFAKRRNGLLKKAYELSVLCDAEVALIIFSNRGKLYEFCST 60

Query: 61  PSMHKTLEKYERCSYGTLQANHQSAKETQASYEEYIKLKEKHEALQHLQRQFFGEDLGRL 120
            SM+KTL +Y RCSYG L+   Q+ ++TQ+SY+EYIKLK K EALQ  QR   GE+LG+L
Sbjct: 61  SSMNKTLGRYHRCSYGALETG-QTDRDTQSSYQEYIKLKAKVEALQQSQRHLLGEELGQL 119

Query: 121 GLEELEQLERQLGSSLGRVRSLKTRNQLDKLSELQRKEEMLLEANNILSMKLEEINAARR 180
           G +ELE+LERQL S+L +VRS KT+  LD+LS+LQ+KE+ L+E N  L  KLEE N  R 
Sbjct: 120 GTKELEELERQLDSTLRQVRSTKTQYMLDQLSDLQQKEQELVEINKALRNKLEE-NDVRI 178

Query: 181 SHPW-AAEEQNITYSNQPAH---SEGSFGHLHSNGTLHLGHNPGVTAHERTVATSEQDVH 236
              W AAE  N+ Y + PA      G F  L  N T+H+G+N  +  H+   AT  Q+  
Sbjct: 179 QSQWEAAERNNVAYRSHPAEHPPDHGVFESLECNNTMHMGYNSAMNDHQMASATPTQNAS 238

Query: 237 SLIPGWML 244
            +IPGWML
Sbjct: 239 GVIPGWML 246

Source: Daucus carota subsp. sativus

Species: Daucus carota

Genus: Daucus

Family: Apiaceae

Order: Apiales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	244
UNIPROTKB|Q6EUV7	247	grcd2 "MADS domain protein" [G	0.995	0.983	0.516	1.2e-60
UNIPROTKB|Q9ATF2	246	FBP5 "MADS-box transcription f	0.995	0.987	0.514	3.1e-60
TAIR|locus:2076522	250	SEP2 "SEPALLATA 2" [Arabidopsi	1.0	0.976	0.512	3.9e-60
TAIR|locus:2143261	262	SEP1 "SEPALLATA1" [Arabidopsis	0.885	0.824	0.547	1.4e-57
UNIPROTKB|D2T2F8	249	grcd4 "GRCD4 protein" [Gerbera	0.983	0.963	0.505	5.3e-56
UNIPROTKB|Q9ATF1	245	FBP9 "MADS-box transcription f	0.987	0.983	0.520	4.8e-55
TAIR|locus:2044259	258	SEP4 "SEPALLATA 4" [Arabidopsi	0.995	0.941	0.501	3.4e-54
UNIPROTKB|Q0J466	249	MADS7 "MADS-box transcription	0.971	0.951	0.488	2.5e-49
UNIPROTKB|Q03489	241	FBP2 "Agamous-like MADS-box pr	0.967	0.979	0.469	3.2e-49
UNIPROTKB|D2T2F9	252	grcd5 "GRCD5 protein" [Gerbera	0.995	0.964	0.456	7.7e-48

UNIPROTKB|Q6EUV7 grcd2 "MADS domain protein" [Gerbera hybrid cultivar (taxid:18101)]

 Score = 621 (223.7 bits), Expect = 1.2e-60, P = 1.2e-60
 Identities = 128/248 (51%), Positives = 170/248 (68%)

Query:     1 MGRGKVELKRIENKINRQVTFAKRRNGLLKKAYELSVLCDAEVALIIFSSRGKLYEFCSS 60
             MGRG+VELKRIENKINRQVTFAKRRNGLLKKAYELSVLCDAEVALIIFS+RGKL+EFCS+
Sbjct:     1 MGRGRVELKRIENKINRQVTFAKRRNGLLKKAYELSVLCDAEVALIIFSNRGKLFEFCST 60

Query:    61 PSMHKTLEKYERCSYGTLQANHQSAKETQASYEEYIKLKEKHEALQHLQRQFFXXXXXXX 120
              +M K LE+Y+ C+YG+++ +  +    Q+SY+EY+KLK K+E+LQ  QRQ F       
Sbjct:    61 SNMLKMLERYQNCTYGSMEVDRSTPNAEQSSYKEYMKLKAKYESLQQYQRQLFGEDLGPL 120

Query:   121 XXXXXXXXXXXXXXXXGRVRSLKTRNQLDKLSELQRKEEMLLEANNILSMKLEEINAARR 180
                              ++RS++T++ LD+LSELQ KE M +EAN  L  KLEE+ A  +
Sbjct:   121 SLKELEQLERQLDSTLRQIRSIRTQSMLDRLSELQVKERMWVEANKALQNKLEEVYAENQ 180

Query:   181 SHP-WAAEEQNITYSNQPAH---SEGSFGHLHSNGTLHLGHNPGVTAHERTVATSEQDVH 236
             + P WAA E + +Y  +  H   S+G F  L  N  L +G+N   ++H  T +T+ Q+++
Sbjct:   181 AGPSWAAGEHHSSYGQEHQHQHQSQGFFQPLDCNSNLQIGYNTVDSSHI-TASTNGQNLN 239

Query:   237 SLIPGWML 244
              LIPGWML
Sbjct:   240 GLIPGWML 247

GO:0005515 "protein binding" evidence=IPI

UNIPROTKB|Q9ATF2 FBP5 "MADS-box transcription factor FBP5" [Petunia x hybrida (taxid:4102)]

 Score = 617 (222.3 bits), Expect = 3.1e-60, P = 3.1e-60
 Identities = 127/247 (51%), Positives = 165/247 (66%)

Query:     1 MGRGKVELKRIENKINRQVTFAKRRNGLLKKAYELSVLCDAEVALIIFSSRGKLYEFCSS 60
             MGRG+VELK+IENKINRQVTFAKRRNGLLKKAYELSVLC+AEVALIIFS+RGKLYEF S+
Sbjct:     1 MGRGRVELKKIENKINRQVTFAKRRNGLLKKAYELSVLCEAEVALIIFSNRGKLYEFSST 60

Query:    61 PSMHKTLEKYERCSYGTLQANHQSAKETQAS--YEEYIKLKEKHEALQHLQRQFFXXXXX 118
              +M KTL++Y++CSYGTL+ NH+S K+      Y EY+KLK K+E+LQ  QRQ       
Sbjct:    61 SNMVKTLDRYQKCSYGTLEVNHRSVKDNNEERIYREYLKLKAKYESLQRYQRQLLGDELG 120

Query:   119 XXXXXXXXXXXXXXXXXXGRVRSLKTRNQLDKLSELQRKEEMLLEANNILSMKLEEINAA 178
                                 ++S +T+  LD+LS+LQ KE++ +EAN +L  KLE+I A 
Sbjct:   121 PLNIDELEHLELQLDSSLKLIKSTRTQLMLDQLSDLQTKEKLWVEANKVLERKLEQIYAE 180

Query:   179 RR-SHPWAAEEQNITYSNQPAHSEGSFGHLHSNGTLHLGHNPGVTAHERTVATSEQDVHS 237
                   W   EQ+  Y  Q A ++G F  L  N TL +G++P  T+ + T  TS Q+V+ 
Sbjct:   181 NNIQQSWGGGEQSGAYGQQHAQTQGFFQPLECNSTLQIGYDPA-TSSQITAVTSGQNVNG 239

Query:   238 LIPGWML 244
             +IPGWML
Sbjct:   240 IIPGWML 246

GO:0005515 "protein binding" evidence=IPI

TAIR|locus:2076522 SEP2 "SEPALLATA 2" [Arabidopsis thaliana (taxid:3702)]

 Score = 616 (221.9 bits), Expect = 3.9e-60, P = 3.9e-60
 Identities = 128/250 (51%), Positives = 167/250 (66%)

Query:     1 MGRGKVELKRIENKINRQVTFAKRRNGLLKKAYELSVLCDAEVALIIFSSRGKLYEFCSS 60
             MGRG+VELKRIENKINRQVTFAKRRNGLLKKAYELSVLCDAEV+LI+FS+RGKLYEFCS+
Sbjct:     1 MGRGRVELKRIENKINRQVTFAKRRNGLLKKAYELSVLCDAEVSLIVFSNRGKLYEFCST 60

Query:    61 PSMHKTLEKYERCSYGTLQANHQSAKETQASYEEYIKLKEKHEALQHLQRQFFXXXXXXX 120
              +M KTLE+Y++CSYG+++ N++ AKE + SY EY+KLK ++E LQ  QR          
Sbjct:    61 SNMLKTLERYQKCSYGSIEVNNKPAKELENSYREYLKLKGRYENLQRQQRNLLGEDLGPL 120

Query:   121 XXXXXXXXXXXXXXXXGRVRSLKTRNQLDKLSELQRKEEMLLEANNILSMKLEEINAARR 180
                              +VR +KT+  LD+LS+LQ KE +LL+AN  LSMKLE++   R 
Sbjct:   121 NSKELEQLERQLDGSLKQVRCIKTQYMLDQLSDLQGKEHILLDANRALSMKLEDMIGVRH 180

Query:   181 SH---PW-AAEEQNITYSNQPAHSEGSFGHLHSNGTLHLGHNPGVTAHER--TVATSEQD 234
              H    W   ++QNI Y +  AHS+G +  L  + TL +G++  V + +   TV    Q 
Sbjct:   181 HHIGGGWEGGDQQNIAYGHPQAHSQGLYQSLECDPTLQIGYSHPVCSEQMAVTVQGQSQQ 240

Query:   235 VHSLIPGWML 244
              +  IPGWML
Sbjct:   241 GNGYIPGWML 250

GO:0003677 "DNA binding" evidence=IEA;ISS

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=IEA;ISS

GO:0005634 "nucleus" evidence=ISM;IEA

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA

GO:0009908 "flower development" evidence=NAS

GO:0046983 "protein dimerization activity" evidence=IEA

GO:0048481 "ovule development" evidence=RCA;IMP

GO:0009827 "plant-type cell wall modification" evidence=RCA

GO:0009860 "pollen tube growth" evidence=RCA

GO:0009886 "post-embryonic morphogenesis" evidence=RCA

GO:0009909 "regulation of flower development" evidence=RCA

GO:0010048 "vernalization response" evidence=RCA

GO:0043481 "anthocyanin accumulation in tissues in response to UV light" evidence=RCA

GO:0048440 "carpel development" evidence=RCA

GO:0048441 "petal development" evidence=RCA

GO:0048443 "stamen development" evidence=RCA

GO:0048507 "meristem development" evidence=RCA

GO:0005515 "protein binding" evidence=IPI

TAIR|locus:2143261 SEP1 "SEPALLATA1" [Arabidopsis thaliana (taxid:3702)]

 Score = 592 (213.5 bits), Expect = 1.4e-57, P = 1.4e-57
 Identities = 121/221 (54%), Positives = 153/221 (69%)

Query:     1 MGRGKVELKRIENKINRQVTFAKRRNGLLKKAYELSVLCDAEVALIIFSSRGKLYEFCSS 60
             MGRG+VELKRIENKINRQVTFAKRRNGLLKKAYELSVLCDAEVALIIFS+RGKLYEFCSS
Sbjct:     1 MGRGRVELKRIENKINRQVTFAKRRNGLLKKAYELSVLCDAEVALIIFSNRGKLYEFCSS 60

Query:    61 PSMHKTLEKYERCSYGTLQANHQSAKETQASYEEYIKLKEKHEALQHLQRQFFXXXXXXX 120
              +M KTL++Y++CSYG+++ N++ AKE + SY EY+KLK ++E LQ  QR          
Sbjct:    61 SNMLKTLDRYQKCSYGSIEVNNKPAKELENSYREYLKLKGRYENLQRQQRNLLGEDLGPL 120

Query:   121 XXXXXXXXXXXXXXXXGRVRSLKTRNQLDKLSELQRKEEMLLEANNILSMKLEEINAARR 180
                              +VRS+KT+  LD+LS+LQ KE+MLLE N  L+MKL+++   R 
Sbjct:   121 NSKELEQLERQLDGSLKQVRSIKTQYMLDQLSDLQNKEQMLLETNRALAMKLDDMIGVRS 180

Query:   181 SHP-----WAAEEQNITYSNQPAHSEGSFGHLHSNGTLHLG 216
              H      W   EQN+TY++  A S+G +  L  N TL +G
Sbjct:   181 HHMGGGGGWEGGEQNVTYAHHQAQSQGLYQPLECNPTLQMG 221

GO:0003677 "DNA binding" evidence=IEA;ISS

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=IEA;ISS;IDA

GO:0005634 "nucleus" evidence=ISM;IEA

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA

GO:0046983 "protein dimerization activity" evidence=IEA

GO:0048481 "ovule development" evidence=RCA;IMP

GO:0005515 "protein binding" evidence=IPI

GO:0009827 "plant-type cell wall modification" evidence=RCA

GO:0009860 "pollen tube growth" evidence=RCA

GO:0009886 "post-embryonic morphogenesis" evidence=RCA

GO:0009909 "regulation of flower development" evidence=RCA

GO:0010048 "vernalization response" evidence=RCA

GO:0010093 "specification of floral organ identity" evidence=RCA

GO:0043481 "anthocyanin accumulation in tissues in response to UV light" evidence=RCA

GO:0048440 "carpel development" evidence=RCA

GO:0048441 "petal development" evidence=RCA

GO:0048443 "stamen development" evidence=RCA

GO:0048507 "meristem development" evidence=RCA

GO:0009908 "flower development" evidence=IDA

UNIPROTKB|D2T2F8 grcd4 "GRCD4 protein" [Gerbera hybrid cultivar (taxid:18101)]

 Score = 577 (208.2 bits), Expect = 5.3e-56, P = 5.3e-56
 Identities = 128/253 (50%), Positives = 157/253 (62%)

Query:     1 MGRGKVELKRIENKINRQVTFAKRRNGLLKKAYELSVLCDAEVALIIFSSRGKLYEFCSS 60
             MGRG+VELKRIENKINRQVTFAKRRNGLLKKAYELSVLCDAEVALIIFS+RGKLYEFCSS
Sbjct:     1 MGRGRVELKRIENKINRQVTFAKRRNGLLKKAYELSVLCDAEVALIIFSNRGKLYEFCSS 60

Query:    61 PSMHKTLEKYERCSYGTLQANHQSAKETQASYEEYIKLKEKHEALQHLQRQFFXXXXXXX 120
              SM KTLEKY  CSYG+L+A+ Q   E+Q +Y EY++LK + E LQ  QR          
Sbjct:    61 SSMVKTLEKYHSCSYGSLKAS-QPENESQYNYHEYLRLKARVEVLQRSQRNLLGEDLAPL 119

Query:   121 XXXXXXXXXXXXXXXXGRVRSLKTRNQLDKLSELQRKEEMLLEANNILSMKLEEINAARR 180
                              ++RS KT++ LD+L++LQRKE++L E N  L  KLEE   + +
Sbjct:   120 NTKELEQLEHQLEMSLRKIRSTKTQSMLDQLADLQRKEQVLAETNKALRKKLEE---SAQ 176

Query:   181 SHP----WAAEEQNITYSNQPAHSEGSFGHLHSNGTLH-----LGHNPGVTAHERTVATS 231
              +P    W    Q I Y+  P HS+  F  L  N T+H     L +NP V+        +
Sbjct:   177 EYPVRQMWEGGAQTIPYNPLPTHSDEFFQPLGLNSTMHNSFNGLRYNPIVSDEMNVAGAN 236

Query:   232 EQDVHSLIPGWML 244
                 + L PGWML
Sbjct:   237 NNSPNGLFPGWML 249

GO:0005515 "protein binding" evidence=IPI

UNIPROTKB|Q9ATF1 FBP9 "MADS-box transcription factor FBP9" [Petunia x hybrida (taxid:4102)]

 Score = 568 (205.0 bits), Expect = 4.8e-55, P = 4.8e-55
 Identities = 129/248 (52%), Positives = 161/248 (64%)

Query:     1 MGRGKVELKRIENKINRQVTFAKRRNGLLKKAYELSVLCDAEVALIIFSSRGKLYEFCSS 60
             MGRG+VELKRIENKINRQVTFAKRRNGLLKKAYELSVLCDAEVALIIFSSRGKLYEFCS+
Sbjct:     1 MGRGRVELKRIENKINRQVTFAKRRNGLLKKAYELSVLCDAEVALIIFSSRGKLYEFCST 60

Query:    61 PSMHKTLEKYERCSYGTLQANHQSAKETQASYEEYIKLKEKHEALQHLQRQFFXXXXXXX 120
              SM KTLEKY++CSY +L    QSA +TQ +Y EY++LK + E LQ  QR          
Sbjct:    61 SSMMKTLEKYQQCSYASLDPM-QSANDTQNNYHEYLRLKARVELLQRSQRNLLGEDLGSL 119

Query:   121 XXXXXXXXXXXXXXXXGRVRSLKTRNQLDKLSELQRKEEMLLEANNILSMKLEEINAAR- 179
                              ++RS KT++ LD+L++LQ+KE+ML EAN  L  KLEE +AAR 
Sbjct:   120 NSKELEQLEHQLDSSLKQIRSKKTQHMLDQLADLQQKEQMLAEANKQLRRKLEE-SAARI 178

Query:   180 -RSHPWAAEEQNITYSNQPAHSEGSFGHLHSNGTL-HLGHNP-GVTAHERTVATSEQDVH 236
                  W    Q + ++  P  +EG F  L  N +    G++P G       V+T+ Q+++
Sbjct:   179 PLRLSWDNGGQPMQHNRLPPQTEGFFQPLGLNSSSPQFGYSPMGANEVNNAVSTA-QNMN 237

Query:   237 SLIPGWML 244
               IPGWML
Sbjct:   238 GFIPGWML 245

GO:0005515 "protein binding" evidence=IPI

TAIR|locus:2044259 SEP4 "SEPALLATA 4" [Arabidopsis thaliana (taxid:3702)]

 Score = 560 (202.2 bits), Expect = 3.4e-54, P = 3.4e-54
 Identities = 130/259 (50%), Positives = 159/259 (61%)

Query:     1 MGRGKVELKRIENKINRQVTFAKRRNGLLKKAYELSVLCDAEVALIIFSSRGKLYEFCSS 60
             MGRGKVELKRIENKINRQVTFAKRRNGLLKKAYELSVLCDAE+AL+IFS+RGKLYEFCSS
Sbjct:     1 MGRGKVELKRIENKINRQVTFAKRRNGLLKKAYELSVLCDAEIALLIFSNRGKLYEFCSS 60

Query:    61 PS-MHKTLEKYERCSYGTLQANHQSAKETQASYEEYIKLKEKHEALQHLQRQFFXXXXXX 119
             PS M +T++KY + SY T+  N QSAK+ Q  Y++Y+KLK + E LQH QR         
Sbjct:    61 PSGMARTVDKYRKHSYATMDPN-QSAKDLQDKYQDYLKLKSRVEILQHSQRHLLGEELSE 119

Query:   120 XXXXXXXXXXXXXXXXXGRVRSLKTRNQLDKLSELQRKEEMLLEANNILSMKLEEINAAR 179
                               ++RS K R+ LD+LS+L+ KEEMLLE N  L  KLE+ +AA 
Sbjct:   120 MDVNELEHLERQVDASLRQIRSTKARSMLDQLSDLKTKEEMLLETNRDLRRKLEDSDAAL 179

Query:   180 RSHPW---AAEEQN---------ITY-SNQPAHSEGSFGHLHSNGTLHLG-HNPGVTAHE 225
                 W   AAE+Q           +Y SN P    G F  L  N  L +  H     A+ 
Sbjct:   180 TQSFWGSSAAEQQQQHQQQQQGMSSYQSNPPIQEAGFFKPLQGNVALQMSSHYNHNPANA 239

Query:   226 RTVATSEQDVHSLIPGWML 244
                AT+ Q+V+   PGWM+
Sbjct:   240 TNSATTSQNVNGFFPGWMV 258

GO:0003677 "DNA binding" evidence=IEA;TAS

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=IEA;ISS

GO:0005634 "nucleus" evidence=ISM;IEA

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA;ISS

GO:0046983 "protein dimerization activity" evidence=IEA

GO:0010076 "maintenance of floral meristem identity" evidence=IMP

GO:0048440 "carpel development" evidence=RCA;IMP

GO:0048441 "petal development" evidence=IMP

GO:0048442 "sepal development" evidence=IMP

GO:0048443 "stamen development" evidence=IMP

GO:0010048 "vernalization response" evidence=RCA

GO:0043481 "anthocyanin accumulation in tissues in response to UV light" evidence=RCA

UNIPROTKB|Q0J466 MADS7 "MADS-box transcription factor 7" [Oryza sativa Japonica Group (taxid:39947)]

 Score = 514 (186.0 bits), Expect = 2.5e-49, P = 2.5e-49
 Identities = 124/254 (48%), Positives = 153/254 (60%)

Query:     1 MGRGKVELKRIENKINRQVTFAKRRNGLLKKAYELSVLCDAEVALIIFSSRGKLYEFCSS 60
             MGRG+VELKRIENKINRQVTFAKRRNGLLKKAYELSVLCDAEVALIIFS+RGKLYEFCS+
Sbjct:     1 MGRGRVELKRIENKINRQVTFAKRRNGLLKKAYELSVLCDAEVALIIFSNRGKLYEFCST 60

Query:    61 PSMHKTLEKYERCSYG---TLQANHQSAKETQASYEEYIKLKEKHEALQHLQRQFFXXXX 117
              SM KTLEKY++CSY    T   N +S ++ +AS  EY+KLK + E LQ  QR       
Sbjct:    61 QSMTKTLEKYQKCSYAGPETAVQNRES-EQLKASRNEYLKLKARVENLQRTQRNLLGEDL 119

Query:   118 XXXXXXXXXXXXXXXXXXXGRVRSLKTRNQLDKLSELQRKEEMLLEANNILSMKLEEINA 177
                                  VR+ +T++ +D+L+ELQRKE+M+ EAN  L  KLEE N 
Sbjct:   120 DSLGIKELESLEKQLDSSLKHVRTTRTKHLVDQLTELQRKEQMVSEANRCLRRKLEESNH 179

Query:   178 ARRSHPWAAEEQNITYSNQPA-----HSEGSFGH-LHSNG--TLHLGHNPGVTAHERTVA 229
              R    W      I Y  QP      H    F H L + G  TL +G+ P    HE   A
Sbjct:   180 VRGQQVWEQGCNLIGYERQPEVQQPLHGGNGFFHPLDAAGEPTLQIGY-PA-EHHE---A 234

Query:   230 TSEQDVHSLIPGWM 243
              +   +++ +P W+
Sbjct:   235 MNSACMNTYMPPWL 248

GO:0005515 "protein binding" evidence=IPI

UNIPROTKB|Q03489 FBP2 "Agamous-like MADS-box protein AGL9 homolog" [Petunia x hybrida (taxid:4102)]

 Score = 513 (185.6 bits), Expect = 3.2e-49, P = 3.2e-49
 Identities = 116/247 (46%), Positives = 152/247 (61%)

Query:     1 MGRGKVELKRIENKINRQVTFAKRRNGLLKKAYELSVLCDAEVALIIFSSRGKLYEFCSS 60
             MGRG+VELKRIENKINRQVTFAKRRNGLLKKAYELSVLCDAEVALIIFS+RGKLYEFCSS
Sbjct:     1 MGRGRVELKRIENKINRQVTFAKRRNGLLKKAYELSVLCDAEVALIIFSNRGKLYEFCSS 60

Query:    61 PSMHKTLEKYERCSYGTLQANHQSAKETQ-ASYEEYIKLKEKHEALQHLQRQFFXXXXXX 119
              SM KTLE+Y++C+YG  + N  + +  + +S +EY+KLK ++EALQ  QR         
Sbjct:    61 SSMLKTLERYQKCNYGAPETNISTREALEISSQQEYLKLKARYEALQRSQRNLLGEDLGP 120

Query:   120 XXXXXXXXXXXXXXXXXGRVRSLKTRNQLDKLSELQRKEEMLLEANNILSMKLEEINAAR 179
                               ++RS +T+  LD+L +LQRKE  L EAN  L  +L E   + 
Sbjct:   121 LNSKELESLERQLDMSLKQIRSTRTQLMLDQLQDLQRKEHALNEANRTLKQRLME--GST 178

Query:   180 RSHPWAAEEQNITYSNQPAHSEGS-FGH-LHSNGTLHLGH-NPGVTAHERTVATSEQDVH 236
              +  W    Q++ Y  Q   ++G  F H L    TL +G+ N  +T     V  +   V+
Sbjct:   179 LNLQWQQNAQDVGYGRQATQTQGDGFFHPLECEPTLQIGYQNDPIT-----VGGAGPSVN 233

Query:   237 SLIPGWM 243
             + + GW+
Sbjct:   234 NYMAGWL 240

GO:0005515 "protein binding" evidence=IPI

UNIPROTKB|D2T2F9 grcd5 "GRCD5 protein" [Gerbera hybrid cultivar (taxid:18101)]

 Score = 500 (181.1 bits), Expect = 7.7e-48, P = 7.7e-48
 Identities = 114/250 (45%), Positives = 149/250 (59%)

Query:     1 MGRGKVELKRIENKINRQVTFAKRRNGLLKKAYELSVLCDAEVALIIFSSRGKLYEFCSS 60
             MGRG+VELKRIENKINRQVTFAKRRNGLLKKAYELSVLCDAEVALIIFS+RGKLYEFCSS
Sbjct:     1 MGRGRVELKRIENKINRQVTFAKRRNGLLKKAYELSVLCDAEVALIIFSNRGKLYEFCSS 60

Query:    61 PSMHKTLEKYERCSYGTLQANHQSAKETQ--ASYEEYIKLKEKHEALQHLQRQFFXXXXX 118
              SM KTLE+Y++C+YG     + SA+E    +S +EY+KLK ++EALQ  QR        
Sbjct:    61 SSMLKTLERYQKCNYGAPDQTNVSAREALELSSQQEYLKLKARYEALQRSQRNLLGEDLG 120

Query:   119 XXXXXXXXXXXXXXXXXXGRVRSLKTRNQLDKLSELQRKEEMLLEANNILSMKLEEINAA 178
                                 +RS +T+  LD L++LQ+KE  L EAN  L  +L E    
Sbjct:   121 PLNCKELESLERQLDTSLKHIRSARTQLMLDTLTDLQKKEHALNEANRTLKQRLIEGTQI 180

Query:   179 RRSHPWAAEEQNITYSNQ---PAH-SEGSFGH-LHSNGTLHLGHNPGVTAHERTVATSEQ 233
                H +    Q + Y ++   P H ++ +F H L    TL +G+           A +  
Sbjct:   181 NSLHWYPQAPQEVCYDDRQHAPQHQTDEAFFHPLDCGPTLQIGYQTDPINVAGAEAVAGP 240

Query:   234 DVHSLIPGWM 243
              +++ + GW+
Sbjct:   241 SMNNYMQGWL 250

GO:0005515 "protein binding" evidence=IPI

GO:0042802 "identical protein binding" evidence=IPI

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
P29384	SEP2_ARATH	No assigned EC number	0.58	1.0	0.976	yes	no
P0C5B0	MADS7_ORYSI	No assigned EC number	0.5415	0.9754	0.9558	N/A	no
Q9SAR1	MADS8_ORYSJ	No assigned EC number	0.5195	0.9590	0.9435	yes	no
Q03489	AGL9_PETHY	No assigned EC number	0.5284	0.9713	0.9834	N/A	no
Q0J466	MADS7_ORYSJ	No assigned EC number	0.5415	0.9754	0.9558	yes	no
Q39685	CMB1_DIACA	No assigned EC number	0.5737	0.9549	1.0	N/A	no
A2Y9P0	MADS5_ORYSI	No assigned EC number	0.5296	0.8770	0.9511	N/A	no
Q38694	AGL9_ARADE	No assigned EC number	0.5528	0.9795	0.956	N/A	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input: GSVIVG00030008001 SubName- Full=Chromosome chr1 scaffold_5, whole genome shotgun sequence; (243 aa) (Vitis vinifera)

Predicted Functional Partners:

Sorry, there are no predicted associations at the current settings.

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	244
cd00265	77	cd00265, MADS_MEF2_like, MEF2 (myocyte enhancer fa	2e-45
smart00432	59	smart00432, MADS, MADS domain	4e-36
cd00120	59	cd00120, MADS, MADS: MCM1, Agamous, Deficiens, and	1e-34
cd00266	83	cd00266, MADS_SRF_like, SRF-like/Type I subfamily	5e-30
pfam00319	51	pfam00319, SRF-TF, SRF-type transcription factor (	5e-26
pfam01486	100	pfam01486, K-box, K-box region	1e-23
COG5068	412	COG5068, ARG80, Regulator of arginine metabolism a	7e-11

>gnl|CDD|238165 cd00265, MADS_MEF2_like, MEF2 (myocyte enhancer factor 2)-like/Type II subfamily of MADS ( MCM1, Agamous, Deficiens, and SRF (serum response factor) box family of eukaryotic transcriptional regulators

 Score =  146 bits (370), Expect = 2e-45
 Identities = 58/78 (74%), Positives = 67/78 (85%), Gaps = 1/78 (1%)

Query: 2  GRGKVELKRIENKINRQVTFAKRRNGLLKKAYELSVLCDAEVALIIFSSRGKLYEFCSSP 61
          GRGK+E+KRIEN  NRQVTF+KRRNGLLKKA+ELSVLCDAEVALIIFSS GKLYEF  SP
Sbjct: 1  GRGKIEIKRIENSTNRQVTFSKRRNGLLKKAHELSVLCDAEVALIIFSSSGKLYEFS-SP 59

Query: 62 SMHKTLEKYERCSYGTLQ 79
          SM K +E+Y++ S  +L 
Sbjct: 60 SMEKIIERYQKTSGSSLW 77

Binds DNA and exists as hetero and homo-dimers. Differs from SRF-like/Type I subgroup mainly in position of the alpha helix responsible for the dimerization interface. Important in homeotic regulation in plants and in immediate-early development in animals. Also found in fungi. Length = 77

>gnl|CDD|197721 smart00432, MADS, MADS domain

 Score =  121 bits (307), Expect = 4e-36
 Identities = 47/59 (79%), Positives = 52/59 (88%)

Query: 2  GRGKVELKRIENKINRQVTFAKRRNGLLKKAYELSVLCDAEVALIIFSSRGKLYEFCSS 60
          GR K+E+KRIENK NRQVTF+KRRNGL KKA+ELSVLCDAEVALI+FS  GKLYEF S 
Sbjct: 1  GRRKIEIKRIENKTNRQVTFSKRRNGLFKKAHELSVLCDAEVALIVFSPTGKLYEFASP 59

Length = 59

>gnl|CDD|238067 cd00120, MADS, MADS: MCM1, Agamous, Deficiens, and SRF (serum response factor) box family of eukaryotic transcriptonal regulators

 Score =  118 bits (297), Expect = 1e-34
 Identities = 47/59 (79%), Positives = 53/59 (89%)

Query: 2  GRGKVELKRIENKINRQVTFAKRRNGLLKKAYELSVLCDAEVALIIFSSRGKLYEFCSS 60
          GRGK+E+KRIENK +RQVTF+KRRNGL KKA ELSVLCDAEVA+I+FS  GKLYEF SS
Sbjct: 1  GRGKIEIKRIENKTSRQVTFSKRRNGLFKKASELSVLCDAEVAVIVFSPSGKLYEFWSS 59

Binds DNA and exists as hetero and homo-dimers. Composed of 2 main subgroups: SRF-like/Type I and MEF2-like (myocyte enhancer factor 2)/ Type II. These subgroups differ mainly in position of the alpha 2 helix responsible for the dimerization interface; Important in homeotic regulation in plants and in immediate-early development in animals. Also found in fungi. Length = 59

>gnl|CDD|238166 cd00266, MADS_SRF_like, SRF-like/Type I subfamily of MADS (MCM1, Agamous, Deficiens, and SRF (serum response factor) box family of eukaryotic transcriptional regulators

 Score =  106 bits (268), Expect = 5e-30
 Identities = 39/71 (54%), Positives = 50/71 (70%)

Query: 2  GRGKVELKRIENKINRQVTFAKRRNGLLKKAYELSVLCDAEVALIIFSSRGKLYEFCSSP 61
          GR K+++KRIENK  R VTF+KRR GL KKA ELS LC AEVA+I++S  GKLY F  S 
Sbjct: 1  GRKKIKIKRIENKKKRAVTFSKRRQGLFKKASELSTLCGAEVAVIVYSPSGKLYVFWPSS 60

Query: 62 SMHKTLEKYER 72
           +   + ++E 
Sbjct: 61 EVEGVISRFEV 71

Binds DNA and exists as hetero- and homo-dimers. Differs from the MEF-like/Type II subgroup mainly in position of the alpha 2 helix responsible for the dimerization interface. Important in homeotic regulation in plants and in immediate-early development in animals. Also found in fungi. Length = 83

>gnl|CDD|109379 pfam00319, SRF-TF, SRF-type transcription factor (DNA-binding and dimerisation domain)

 Score = 95.5 bits (238), Expect = 5e-26
 Identities = 42/51 (82%), Positives = 47/51 (92%)

Query: 9  KRIENKINRQVTFAKRRNGLLKKAYELSVLCDAEVALIIFSSRGKLYEFCS 59
          KRIENK NRQVTF+KRRNG+ KKA+ELSVLCDAEVA+IIFSS GKLYE+ S
Sbjct: 1  KRIENKSNRQVTFSKRRNGIFKKAHELSVLCDAEVAVIIFSSTGKLYEYSS 51

Length = 51

>gnl|CDD|216525 pfam01486, K-box, K-box region

 Score = 90.7 bits (226), Expect = 1e-23
 Identities = 44/100 (44%), Positives = 59/100 (59%)

Query: 75  YGTLQANHQSAKETQASYEEYIKLKEKHEALQHLQRQFFGEDLGRLGLEELEQLERQLGS 134
           Y  L  N     + +   +E  KLK+++E LQ  QR   GEDLG L L+EL+QLE+QL +
Sbjct: 1   YQKLSGNDLWESKYENLQQEAAKLKKQNENLQREQRHLLGEDLGSLSLKELQQLEQQLEN 60

Query: 135 SLGRVRSLKTRNQLDKLSELQRKEEMLLEANNILSMKLEE 174
            L  +RS K    L+++ ELQ+KE  L E N  L  KLEE
Sbjct: 61  GLKHIRSRKNELLLNQIEELQKKERELQEENRNLRQKLEE 100

The K-box region is commonly found associated with SRF-type transcription factors see pfam00319. The K-box is a possible coiled-coil structure. Possible role in multimer formation. Length = 100

>gnl|CDD|227400 COG5068, ARG80, Regulator of arginine metabolism and related MADS box-containing transcription factors [Transcription]

 Score = 61.2 bits (148), Expect = 7e-11
 Identities = 25/61 (40%), Positives = 38/61 (62%)

Query: 1   MGRGKVELKRIENKINRQVTFAKRRNGLLKKAYELSVLCDAEVALIIFSSRGKLYEFCSS 60
           +   K+ +  I NK  R VTF+KR++G+ KKA+ELSVL   EV L++ S  G ++ F + 
Sbjct: 81  VTGRKIGISYITNKTKRSVTFSKRKHGINKKAFELSVLTGTEVLLLVISENGLVHTFTTP 140

Query: 61  P 61
            
Sbjct: 141 K 141

Length = 412

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	244
KOG0014	195	consensus MADS box transcription factor [Transcrip	100.0
cd00265	77	MADS_MEF2_like MEF2 (myocyte enhancer factor 2)-li	100.0
cd00266	83	MADS_SRF_like SRF-like/Type I subfamily of MADS (M	99.96
smart00432	59	MADS MADS domain.	99.96
cd00120	59	MADS MADS: MCM1, Agamous, Deficiens, and SRF (seru	99.95
PF00319	51	SRF-TF: SRF-type transcription factor (DNA-binding	99.94
PF01486	100	K-box: K-box region; InterPro: IPR002487 MADS gene	99.85
KOG0015	338	consensus Regulator of arginine metabolism and rel	99.79
COG5068	412	ARG80 Regulator of arginine metabolism and related	99.47
PF06005	72	DUF904: Protein of unknown function (DUF904); Inte	94.67
PRK04098	158	sec-independent translocase; Provisional	89.91
PF10584	23	Proteasome_A_N: Proteasome subunit A N-terminal si	88.92
cd07429	108	Cby_like Chibby, a nuclear inhibitor of Wnt/beta-c	87.55
PF06698	59	DUF1192: Protein of unknown function (DUF1192); In	86.99
PF08317	325	Spc7: Spc7 kinetochore protein; InterPro: IPR01325	85.5
smart00787	312	Spc7 Spc7 kinetochore protein. This domain is foun	85.1
COG3074	79	Uncharacterized protein conserved in bacteria [Fun	83.85
PRK13169	110	DNA replication intiation control protein YabA; Re	83.1
PF06156	107	DUF972: Protein of unknown function (DUF972); Inte	82.87
PRK15422	79	septal ring assembly protein ZapB; Provisional	82.4
PF01166	59	TSC22: TSC-22/dip/bun family; InterPro: IPR000580	82.05

>KOG0014 consensus MADS box transcription factor [Transcription]

Probab=100.00  E-value=1.3e-40  Score=280.41  Aligned_cols=164  Identities=48%  Similarity=0.621  Sum_probs=133.5

Q ss_pred             CCccccceeeecCCCCcceeccccccchhhhhhhhhcccCcceeeeeecCCCCcccccCCC-ccchhhhhhhhccccccc
Q 026043            1 MGRGKVELKRIENKINRQVTFAKRRNGLLKKAYELSVLCDAEVALIIFSSRGKLYEFCSSP-SMHKTLEKYERCSYGTLQ   79 (244)
Q Consensus         1 MgR~Ki~ik~Ien~~~RqvTFsKRr~GL~KKA~ELSvLCdaeValIvfS~~Gkl~ef~s~~-sm~~iLeRY~~~~~~~~~   79 (244)
                      |||+||+|++|+|+++|||||+|||+||||||+|||||||||||||||||+|++|+|++++ +|..|++||.........
T Consensus         1 M~R~ki~i~~Ien~~~RqvTFsKRr~GL~KKA~ELsvLCd~eiavIifsp~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~   80 (195)
T KOG0014|consen    1 MGRGKIEIKRIENESSRQVTFSKRRNGLFKKASELSVLCDAEIAVIVFSPSGKLYEFGSSDESVDAVVDRFLNLTEPSRK   80 (195)
T ss_pred             CCCCccceeeccccchhhhhhHHHHhhHHHHHHHHHHhcCCeEEEEEECCCCCccccCCcchhHHHHHHHHHhhhhhhhc
Confidence            9999999999999999999999999999999999999999999999999999999999753 399999999987665433


Q ss_pred             ccccchhHh---------------------hhhHHHHHHHHHHHHHHHH---HHHHhhcCCCCCCCH-HHHHHHHHHHhh
Q 026043           80 ANHQSAKET---------------------QASYEEYIKLKEKHEALQH---LQRQFFGEDLGRLGL-EELEQLERQLGS  134 (244)
Q Consensus        80 ~~~~~~~~~---------------------q~~~~E~~kLk~kie~Lq~---~~r~l~GedL~~Ls~-~EL~~LE~qLe~  134 (244)
                      .. ....+.                     +.+..+...++...+.++.   .++++.|++|.+++. .+|..++.+|+.
T Consensus        81 ~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~l~~l~~~~~l~~~~~~l~~  159 (195)
T KOG0014|consen   81 KK-RVNLESFLRNKKLTELVEEEEKEELKLQLKKSLESSLKVDPEDLELLELEQRKLTGEDLQSLSSLNELNSLESQLES  159 (195)
T ss_pred             cc-ccchhhHhhhhhhhcccchhhhhhccchhhhhhhhhhhcchhhhhhhHHHHHHHhccccccCCHHHHhcchhhHHHH
Confidence            22 111111                     1133444556666666654   388999999999999 999999999999


Q ss_pred             HHHHHHHhhhhchHHHHH-HHHHHHHHHHHHH
Q 026043          135 SLGRVRSLKTRNQLDKLS-ELQRKEEMLLEAN  165 (244)
Q Consensus       135 sL~~IR~rK~ql~~~~i~-~L~~ke~~L~eeN  165 (244)
                      ++..+|..+...+.+++. .++.++..+.+.|
T Consensus       160 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  191 (195)
T KOG0014|consen  160 SLHNSRSSKSKPLSDSNFQVLQEKEKSLEAEN  191 (195)
T ss_pred             hhcCCCCCCCcCCcchhhhhhcccchhccccC
Confidence            999999999999998887 5665555554433

>cd00265 MADS_MEF2_like MEF2 (myocyte enhancer factor 2)-like/Type II subfamily of MADS ( MCM1, Agamous, Deficiens, and SRF (serum response factor) box family of eukaryotic transcriptional regulators

Probab=100.00  E-value=5.1e-34  Score=206.49  Aligned_cols=75  Identities=75%  Similarity=1.092  Sum_probs=71.4

Q ss_pred             CccccceeeecCCCCcceeccccccchhhhhhhhhcccCcceeeeeecCCCCcccccCCCccchhhhhhhhccccc
Q 026043            2 GRGKVELKRIENKINRQVTFAKRRNGLLKKAYELSVLCDAEVALIIFSSRGKLYEFCSSPSMHKTLEKYERCSYGT   77 (244)
Q Consensus         2 gR~Ki~ik~Ien~~~RqvTFsKRr~GL~KKA~ELSvLCdaeValIvfS~~Gkl~ef~s~~sm~~iLeRY~~~~~~~   77 (244)
                      ||+||+|++|||+.+|++||+||++||||||+||||||||+||||||||+|++|+|+++ ++++||+||...+...
T Consensus         1 gr~ki~i~~i~~~~~r~~tf~kR~~gl~kKa~Els~Lc~~~v~lvv~sp~gk~~~f~s~-s~~~vl~ry~~~~~~~   75 (77)
T cd00265           1 GRGKIEIKRIENSTNRQVTFSKRRNGLLKKAHELSVLCDAEVALIIFSSSGKLYEFSSP-SMEKIIERYQKTSGSS   75 (77)
T ss_pred             CCCcceeEEecCccHHHHHHHHhhhhhhhcceeheeccCCceeEEEEcCCCceEEecCC-CHHHHHHHHHhccccc
Confidence            89999999999999999999999999999999999999999999999999999999976 7899999999886543

Binds DNA and exists as hetero and homo-dimers. Differs from SRF-like/Type I subgroup mainly in position of the alpha helix responsible for the dimerization interface. Important in homeotic regulation in plants and in immediate-early development in animals. Also found in fungi.

>cd00266 MADS_SRF_like SRF-like/Type I subfamily of MADS (MCM1, Agamous, Deficiens, and SRF (serum response factor) box family of eukaryotic transcriptional regulators

Probab=99.96  E-value=4e-31  Score=194.10  Aligned_cols=77  Identities=52%  Similarity=0.782  Sum_probs=71.5

Q ss_pred             CccccceeeecCCCCcceeccccccchhhhhhhhhcccCcceeeeeecCCCCcccccCCCccchhhhhhhhcccccc
Q 026043            2 GRGKVELKRIENKINRQVTFAKRRNGLLKKAYELSVLCDAEVALIIFSSRGKLYEFCSSPSMHKTLEKYERCSYGTL   78 (244)
Q Consensus         2 gR~Ki~ik~Ien~~~RqvTFsKRr~GL~KKA~ELSvLCdaeValIvfS~~Gkl~ef~s~~sm~~iLeRY~~~~~~~~   78 (244)
                      ||+||+|++|+|+.+|+|||+|||.||||||+||||||||+||+|||||+|++|+|++++++..+|+||...+....
T Consensus         1 gr~Ki~i~~I~~~~~R~~tf~KRk~gl~kKa~ELs~Lc~~~v~~iv~sp~~~~~~~~~~~~~~~~l~~~~~~~~~~~   77 (83)
T cd00266           1 GRKKIKIKRIENKKKRAVTFSKRRQGLFKKASELSTLCGAEVAVIVYSPSGKLYVFWPSSEVEGVISRFEVLSALER   77 (83)
T ss_pred             CCccceeEEeeccchhhhhHHHhhhhHHHHHHHHHHhhCCcEEEEEECCCCCcceecCcHHHHHHHHHHhhcCHhhh
Confidence            89999999999999999999999999999999999999999999999999999999876459999999988765443

Binds DNA and exists as hetero- and homo-dimers. Differs from the MEF-like/Type II subgroup mainly in position of the alpha 2 helix responsible for the dimerization interface. Important in homeotic regulation in plants and in immediate-early development in animals. Also found in fungi.

>smart00432 MADS MADS domain

Probab=99.96  E-value=2.2e-30  Score=177.53  Aligned_cols=59  Identities=80%  Similarity=1.166  Sum_probs=57.5

Q ss_pred             CccccceeeecCCCCcceeccccccchhhhhhhhhcccCcceeeeeecCCCCcccccCC
Q 026043            2 GRGKVELKRIENKINRQVTFAKRRNGLLKKAYELSVLCDAEVALIIFSSRGKLYEFCSS   60 (244)
Q Consensus         2 gR~Ki~ik~Ien~~~RqvTFsKRr~GL~KKA~ELSvLCdaeValIvfS~~Gkl~ef~s~   60 (244)
                      ||+||+|++|+|+.+|++||+||+.||+|||+||||||||+||||||||+|++|+|+++
T Consensus         1 gR~Ki~i~~I~~~~~R~~tf~kRk~gl~kKa~Els~Lc~~~v~~iv~sp~g~~~~~~~p   59 (59)
T smart00432        1 GRRKIEIKRIENKTNRQVTFSKRRNGLFKKAHELSVLCDAEVALIVFSPTGKLYEFASP   59 (59)
T ss_pred             CCCcceeEEeeCcchhhhhhHhhhhhHHHHHHHHhhccCCeEEEEEECCCCCeeeccCC
Confidence            89999999999999999999999999999999999999999999999999999999863

>cd00120 MADS MADS: MCM1, Agamous, Deficiens, and SRF (serum response factor) box family of eukaryotic transcriptonal regulators

Probab=99.95  E-value=1.2e-29  Score=174.02  Aligned_cols=58  Identities=79%  Similarity=1.192  Sum_probs=57.0

Q ss_pred             CccccceeeecCCCCcceeccccccchhhhhhhhhcccCcceeeeeecCCCCcccccC
Q 026043            2 GRGKVELKRIENKINRQVTFAKRRNGLLKKAYELSVLCDAEVALIIFSSRGKLYEFCS   59 (244)
Q Consensus         2 gR~Ki~ik~Ien~~~RqvTFsKRr~GL~KKA~ELSvLCdaeValIvfS~~Gkl~ef~s   59 (244)
                      ||+||+|++|+|+..|++||+|||.||+|||+||||||||+||+|||||+|++|+|++
T Consensus         1 gr~Ki~i~~I~~~~~R~~tf~kR~~gl~kKa~Els~Lc~~~v~~iv~sp~g~~~~~~~   58 (59)
T cd00120           1 GRGKIEIKRIENKTSRQVTFSKRRNGLFKKASELSVLCDAEVAVIVFSPSGKLYEFWS   58 (59)
T ss_pred             CCccceeEEeeCcchhhhhHHHHhchHHHhhhhheeccCCcEEEEEECCCCCcccccC
Confidence            8999999999999999999999999999999999999999999999999999999985

Binds DNA and exists as hetero and homo-dimers. Composed of 2 main subgroups: SRF-like/Type I and MEF2-like (myocyte enhancer factor 2)/ Type II. These subgroups differ mainly in position of the alpha 2 helix responsible for the dimerization interface; Important in homeotic regulation in plants and in immediate-early development in animals. Also found in fungi.

>PF00319 SRF-TF: SRF-type transcription factor (DNA-binding and dimerisation domain); InterPro: IPR002100 Human serum response factor (SRF) is a ubiquitous nuclear protein important for cell proliferation and differentiation

Probab=99.94  E-value=2e-28  Score=162.64  Aligned_cols=51  Identities=67%  Similarity=1.006  Sum_probs=47.1

Q ss_pred             eeecCCCCcceeccccccchhhhhhhhhcccCcceeeeeecCCCCcccccC
Q 026043            9 KRIENKINRQVTFAKRRNGLLKKAYELSVLCDAEVALIIFSSRGKLYEFCS   59 (244)
Q Consensus         9 k~Ien~~~RqvTFsKRr~GL~KKA~ELSvLCdaeValIvfS~~Gkl~ef~s   59 (244)
                      |+|+|+..|++||+|||.||||||+|||+|||||||||||||+|++|+|||
T Consensus         1 K~I~n~~~R~~tf~KRk~gL~KKa~ELs~LC~~~v~~iv~~~~g~~~~f~s   51 (51)
T PF00319_consen    1 KRIENKSRRKVTFSKRKKGLFKKASELSTLCGVDVALIVFSPDGKLYTFPS   51 (51)
T ss_dssp             S--SSHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEEETTSEEEEEES
T ss_pred             CCccchhHhHhHHHHHHhhhhhccceeeeecCCeEEEEEECCCCCEEEecC
Confidence            689999999999999999999999999999999999999999999999986

SRF function is essential for transcriptional regulation of numerous growth-factor-inducible genes, such as c-fos oncogene and muscle-specific actin genes. A core domain of around 90 amino acids is sufficient for the activities of DNA-binding, dimerisation and interaction with accessory factors. Within the core is a DNA-binding region, designated the MADS box [], that is highly similar to many eukaryotic regulatory proteins: among these are MCM1, the regulator of cell type-specific genes in fission yeast; DSRF, a Drosophila trachea development factor; the MEF2 family of myocyte-specific enhancer factors; and the Agamous and Deficiens families of plant homeotic proteins. In SRF, the MADS box has been shown to be involved in DNA-binding and dimerisation []. Proteins belonging to the MADS family function as dimers, the primary DNA-binding element of which is an anti-parallel coiled coil of two amphipathic alpha-helices, one from each subunit. The DNA wraps around the coiled coil allowing the basic N-termini of the helices to fit into the DNA major groove. The chain extending from the helix N-termini reaches over the DNA backbone and penetrates into the minor groove. A 4-stranded, anti-parallel beta-sheet packs against the coiled-coil face opposite the DNA and is the central element of the dimerisation interface. The MADS-box domain is commonly found associated with K-box region see IPR002487 from INTERPRO ; GO: 0003677 DNA binding, 0046983 protein dimerization activity; PDB: 1MNM_B 1N6J_A 1TQE_S 3MU6_D 3P57_I 1EGW_A 1C7U_B 3KOV_A 1HBX_A 1K6O_C ....

>PF01486 K-box: K-box region; InterPro: IPR002487 MADS genes in plants encode key developmental regulators of vegetative and reproductive development

Probab=99.85  E-value=5.2e-21  Score=145.29  Aligned_cols=90  Identities=43%  Similarity=0.595  Sum_probs=86.1

Q ss_pred             hhHhhhhHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHhhHHHHHHHhhhhchHHHHHHHHHHHHHHHHH
Q 026043           85 AKETQASYEEYIKLKEKHEALQHLQRQFFGEDLGRLGLEELEQLERQLGSSLGRVRSLKTRNQLDKLSELQRKEEMLLEA  164 (244)
Q Consensus        85 ~~~~q~~~~E~~kLk~kie~Lq~~~r~l~GedL~~Ls~~EL~~LE~qLe~sL~~IR~rK~ql~~~~i~~L~~ke~~L~ee  164 (244)
                      +.+.+.|..++.+|+.+++.|+..+|+++|+||++||++||.+||++|+.||.+||+||+++|.++|+.|++|++.|.++
T Consensus        11 ~~~~e~~~~e~~~L~~~~~~L~~~~R~~~GedL~~Ls~~eL~~LE~~Le~aL~~VR~rK~~~l~~~i~~l~~ke~~l~~e   90 (100)
T PF01486_consen   11 DSQHEELQQEIAKLRKENESLQKELRHLMGEDLESLSLKELQQLEQQLESALKRVRSRKDQLLMEQIEELKKKERELEEE   90 (100)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHhccccccccccchHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            34557999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHH
Q 026043          165 NNILSMKLEE  174 (244)
Q Consensus       165 N~~L~~kl~e  174 (244)
                      |..|+.+++|
T Consensus        91 n~~L~~~~~e  100 (100)
T PF01486_consen   91 NNQLRQKIEE  100 (100)
T ss_pred             HHHHHHHhcC
Confidence            9999999864

The majority of the plant MADS proteins share a stereotypical MIKC structure. It comprises (from N- to C-terminal) an N-terminal domain, which is, however, present only in a minority of proteins; a MADS domain (see PDOC00302 from PROSITEDOC, IPR002100 from INTERPRO), which is the major determinant of DNA-binding but which also performs dimerisation and accessory factor binding functions; a weakly conserved intervening (I) domain, which constitutes a key molecular determinant for the selective formation of DNA-binding dimers; a keratin-like (K-box) domain, which promotes protein dimerisation; and a C-terminal (C) domain, which is involved in transcriptional activation or in the formation of ternary or quaternary protein complexes. The 80-amino acid K-box domain was originally identified as a region with low but significant similarity to a region of keratin, which is part of the coiled-coil sequence constituting the central rod-shaped domain of keratin [, , ]. The K-box protein-protein interaction domain which mediates heterodimerization of MIKC-type MADS proteins contains several heptad repeats in which the first and the fourth positions are occupied by hydrophobic amino acids suggesting that the K-box domain forms three amphipathic alpha-helices referred to as K1, K2, and K3 [].; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus

>KOG0015 consensus Regulator of arginine metabolism and related MADS box-containing transcription factors [Transcription]

Probab=99.79  E-value=2.2e-20  Score=162.58  Aligned_cols=65  Identities=43%  Similarity=0.774  Sum_probs=61.2

Q ss_pred             CccccceeeecCCCCcceeccccccchhhhhhhhhcccCcceeeeeecCCCCcccccCCCccchhh
Q 026043            2 GRGKVELKRIENKINRQVTFAKRRNGLLKKAYELSVLCDAEVALIIFSSRGKLYEFCSSPSMHKTL   67 (244)
Q Consensus         2 gR~Ki~ik~Ien~~~RqvTFsKRr~GL~KKA~ELSvLCdaeValIvfS~~Gkl~ef~s~~sm~~iL   67 (244)
                      ||.||+|++|||+..|.|||||||.|+||||+|||||.|.+|-|+|.|.+|-+|.|+++ .++-||
T Consensus        63 gr~kik~eyIenK~rR~~tFSKRK~GImKKAyELs~LTGtqVllLVaSEtGhVyTFaTp-KLep~i  127 (338)
T KOG0015|consen   63 GRVKIKMEYIENKLRRYVTFSKRKTGIMKKAYELSTLTGTQVLLLVASETGHVYTFATP-KLEPMI  127 (338)
T ss_pred             ceeeccchhhcccceeeeeehhhhhhhHHHHHHhhhcccceEEEEEEecCcceEEeccc-cccccc
Confidence            79999999999999999999999999999999999999999999999999999999975 665555

>COG5068 ARG80 Regulator of arginine metabolism and related MADS box-containing transcription factors [Transcription]

Probab=99.47  E-value=1.8e-14  Score=131.03  Aligned_cols=66  Identities=38%  Similarity=0.615  Sum_probs=61.3

Q ss_pred             CCccccceeeecCCCCcceeccccccchhhhhhhhhcccCcceeeeeecCCCCcccccCCCccchhh
Q 026043            1 MGRGKVELKRIENKINRQVTFAKRRNGLLKKAYELSVLCDAEVALIIFSSRGKLYEFCSSPSMHKTL   67 (244)
Q Consensus         1 MgR~Ki~ik~Ien~~~RqvTFsKRr~GL~KKA~ELSvLCdaeValIvfS~~Gkl~ef~s~~sm~~iL   67 (244)
                      |||+|+.|..|+|+.+|.|||+||+.|++|||+||+||.|.+|.|+|.|.+|++|.|+++ ..+.|+
T Consensus        81 ~~~~~~~is~i~nk~~r~vtf~Krk~gI~kka~ElsvLt~~~vl~lvise~g~v~tf~tp-~~e~v~  146 (412)
T COG5068          81 VTGRKIGISYITNKTKRSVTFSKRKHGINKKAFELSVLTGTEVLLLVISENGLVHTFTTP-KLESVV  146 (412)
T ss_pred             cccccCCcccccCcccccchhhhhhhhhhhhhhhhhhccCCceEEEEecCCCceeeecCC-cccccc
Confidence            789999999999999999999999999999999999999999999999999999999975 444443

>PF06005 DUF904: Protein of unknown function (DUF904); InterPro: IPR009252 Cell division protein ZapB is a non-essential, abundant cell division factor that is required for proper Z-ring formation

Probab=94.67  E-value=0.35  Score=34.36  Aligned_cols=50  Identities=30%  Similarity=0.328  Sum_probs=37.1

Q ss_pred             CCHHHHHHHHHHHhhHHHHHHHhhhhchHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 026043          120 LGLEELEQLERQLGSSLGRVRSLKTRNQLDKLSELQRKEEMLLEANNILSMKLEE  174 (244)
Q Consensus       120 Ls~~EL~~LE~qLe~sL~~IR~rK~ql~~~~i~~L~~ke~~L~eeN~~L~~kl~e  174 (244)
                      +|++.|.+||..+..++..|.     ++..++++|+.+-..|.++|..|+.....
T Consensus         1 M~~E~l~~LE~ki~~aveti~-----~Lq~e~eeLke~n~~L~~e~~~L~~en~~   50 (72)
T PF06005_consen    1 MSLELLEQLEEKIQQAVETIA-----LLQMENEELKEKNNELKEENEELKEENEQ   50 (72)
T ss_dssp             --HHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             CchHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHhHHHHHHHHHHHHHH
Confidence            578899999999999999987     45566678888766666666666665544

It is recruited early to the divisome by direct interaction with FtsZ, stimulating Z-ring assembly and thereby promoting cell division earlier in the cell cycle. Its recruitment to the Z-ring requires functional FtsA or ZipA.; GO: 0000917 barrier septum formation, 0043093 cytokinesis by binary fission, 0005737 cytoplasm; PDB: 2JEE_A.

>PRK04098 sec-independent translocase; Provisional

Probab=89.91  E-value=0.2  Score=40.95  Aligned_cols=31  Identities=19%  Similarity=0.226  Sum_probs=23.4

Q ss_pred             ceeeeeecCCCCcccccCCCccchhhhhhhhccc
Q 026043           42 EVALIIFSSRGKLYEFCSSPSMHKTLEKYERCSY   75 (244)
Q Consensus        42 eValIvfS~~Gkl~ef~s~~sm~~iLeRY~~~~~   75 (244)
                      =||||||+|. ||++...  .+-+.+..+++...
T Consensus        14 vVaLlvfGP~-KLP~~~r--~lGk~ir~~K~~~~   44 (158)
T PRK04098         14 VVAIIFLGPD-KLPQAMV--DIAKFFKAVKKTIN   44 (158)
T ss_pred             HHHHhhcCch-HHHHHHH--HHHHHHHHHHHHHH
Confidence            3789999986 8888773  57788888877643

>PF10584 Proteasome_A_N: Proteasome subunit A N-terminal signature; InterPro: IPR000426 The proteasome (or macropain) (3

Probab=88.92  E-value=0.11  Score=28.70  Aligned_cols=14  Identities=29%  Similarity=0.717  Sum_probs=11.4

Q ss_pred             eeeeeecCCCCccc
Q 026043           43 VALIIFSSRGKLYE   56 (244)
Q Consensus        43 ValIvfS~~Gkl~e   56 (244)
                      -.+.+|||+|+||.
T Consensus         3 ~~~t~FSp~Grl~Q   16 (23)
T PF10584_consen    3 RSITTFSPDGRLFQ   16 (23)
T ss_dssp             SSTTSBBTTSSBHH
T ss_pred             CCceeECCCCeEEe
Confidence            45678999999975

4.25.1 from EC) [, , , , ] is a eukaryotic and archaeal multicatalytic proteinase complex that seems to be involved in an ATP/ubiquitin-dependent nonlysosomal proteolytic pathway. In eukaryotes the proteasome is composed of about 28 distinct subunits which form a highly ordered ring-shaped structure (20S ring) of about 700 kDa. Most proteasome subunits can be classified, on the basis on sequence similarities into two groups, alpha (A) and beta (B). This family contains the alpha subunit sequences which range from 210 to 290 amino acids. These sequences are classified as non-peptidase homologues in MEROPS peptidase family T1 (clan PB(T)). ; GO: 0004175 endopeptidase activity, 0006511 ubiquitin-dependent protein catabolic process, 0019773 proteasome core complex, alpha-subunit complex; PDB: 3H4P_M 1IRU_O 3UN4_U 1FNT_A 3OEV_G 3OEU_U 3SDK_U 3DY3_G 3MG7_G 3L5Q_C ....

>cd07429 Cby_like Chibby, a nuclear inhibitor of Wnt/beta-catenin mediated transcription, and similar proteins

Probab=87.55  E-value=0.98  Score=34.63  Aligned_cols=26  Identities=35%  Similarity=0.562  Sum_probs=20.9

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 026043          149 DKLSELQRKEEMLLEANNILSMKLEE  174 (244)
Q Consensus       149 ~~i~~L~~ke~~L~eeN~~L~~kl~e  174 (244)
                      ..+..||+|.+.|+|||+.|+.|++-
T Consensus        72 ~e~~rlkkk~~~LeEENNlLklKiev   97 (108)
T cd07429          72 REVLRLKKKNQQLEEENNLLKLKIEV   97 (108)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            34456778889999999999999863

Chibby(Cby) is a well-conserved nuclear protein that functions as part of the Wnt/beta-catenin signaling pathway. Specifically, Cby binds directly to beta-catenin by interacting with its central region, which harbors armadillo repeats. Cby-beta-catenin interactions may also involve 14-3-3 proteins. By competing with other binding partners of beta-catenin, the Tcf/Lef transcription factors, Cby inhibits transcriptional activation. Cby has been shown to play a role in adipocyte differentiation. The C-terminal region of Cby appears to contain an alpha-helical coiled-coil motif.

>PF06698 DUF1192: Protein of unknown function (DUF1192); InterPro: IPR009579 This family consists of several short, hypothetical, bacterial proteins of around 60 residues in length

Probab=86.99  E-value=0.89  Score=31.04  Aligned_cols=31  Identities=35%  Similarity=0.504  Sum_probs=25.2

Q ss_pred             HhhcCCCCCCCHHHHHHHHHHHhhHHHHHHH
Q 026043          111 QFFGEDLGRLGLEELEQLERQLGSSLGRVRS  141 (244)
Q Consensus       111 ~l~GedL~~Ls~~EL~~LE~qLe~sL~~IR~  141 (244)
                      +.+|+||+.||++||..--..|+.=+.+++.
T Consensus        12 ~~ig~dLs~lSv~EL~~RIa~L~aEI~R~~~   42 (59)
T PF06698_consen   12 HEIGEDLSLLSVEELEERIALLEAEIARLEA   42 (59)
T ss_pred             cccCCCchhcCHHHHHHHHHHHHHHHHHHHH
Confidence            5789999999999999877777766666654

The function of this family is unknown.

>PF08317 Spc7: Spc7 kinetochore protein; InterPro: IPR013253 This entry consists of cell division proteins which are required for kinetochore-spindle association []

Probab=85.50  E-value=19  Score=32.69  Aligned_cols=64  Identities=27%  Similarity=0.318  Sum_probs=50.5

Q ss_pred             CCCCCCCHHHHHHHHHHHhhHHHHHHHhhhhc--hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 026043          115 EDLGRLGLEELEQLERQLGSSLGRVRSLKTRN--QLDKLSELQRKEEMLLEANNILSMKLEEINAA  178 (244)
Q Consensus       115 edL~~Ls~~EL~~LE~qLe~sL~~IR~rK~ql--~~~~i~~L~~ke~~L~eeN~~L~~kl~e~~~~  178 (244)
                      ..++.++..+|..+-..|...-..|.++|..+  +..++..++.+...+.++-..+...|.+..+.
T Consensus       201 ~e~~~~D~~eL~~lr~eL~~~~~~i~~~k~~l~el~~el~~l~~~i~~~~~~k~~l~~eI~e~~~~  266 (325)
T PF08317_consen  201 EEIESCDQEELEALRQELAEQKEEIEAKKKELAELQEELEELEEKIEELEEQKQELLAEIAEAEKI  266 (325)
T ss_pred             hhhhhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            45889999999999999999999999888776  55677777777777777777777777765543

>smart00787 Spc7 Spc7 kinetochore protein

Probab=85.10  E-value=8  Score=35.15  Aligned_cols=64  Identities=20%  Similarity=0.238  Sum_probs=47.4

Q ss_pred             CCCCCCCHHHHHHHHHHHhhHHHHHHHhhhhc--hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 026043          115 EDLGRLGLEELEQLERQLGSSLGRVRSLKTRN--QLDKLSELQRKEEMLLEANNILSMKLEEINAA  178 (244)
Q Consensus       115 edL~~Ls~~EL~~LE~qLe~sL~~IR~rK~ql--~~~~i~~L~~ke~~L~eeN~~L~~kl~e~~~~  178 (244)
                      ++++.++.++|..+-..|..-...|..++.++  +.+++..+..+.....+.-..+...|.+.++.
T Consensus       196 ~e~~~~d~~eL~~lk~~l~~~~~ei~~~~~~l~e~~~~l~~l~~~I~~~~~~k~e~~~~I~~ae~~  261 (312)
T smart00787      196 DELEDCDPTELDRAKEKLKKLLQEIMIKVKKLEELEEELQELESKIEDLTNKKSELNTEIAEAEKK  261 (312)
T ss_pred             HHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            57788999999999999999999888888775  44566666666666666666666666665543

This domain is found in cell division proteins which are required for kinetochore-spindle association.

>COG3074 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=83.85  E-value=11  Score=26.63  Aligned_cols=52  Identities=19%  Similarity=0.283  Sum_probs=36.4

Q ss_pred             CCHHHHHHHHHHHhhHHHHHHHhhhhchHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 026043          120 LGLEELEQLERQLGSSLGRVRSLKTRNQLDKLSELQRKEEMLLEANNILSMKLEEIN  176 (244)
Q Consensus       120 Ls~~EL~~LE~qLe~sL~~IR~rK~ql~~~~i~~L~~ke~~L~eeN~~L~~kl~e~~  176 (244)
                      ||++=|.+||..+..++.-|-     ++.-+|++|+.|-..|..+-..++...+...
T Consensus         1 MSlEv~ekLE~KiqqAvdTI~-----LLQmEieELKEknn~l~~e~q~~q~~reaL~   52 (79)
T COG3074           1 MSLEVFEKLEAKVQQAIDTIT-----LLQMEIEELKEKNNSLSQEVQNAQHQREALE   52 (79)
T ss_pred             CchHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHhhHhHHHHHHHHHHHHHHH
Confidence            577778889888888888774     6666777777777666666665555554443

>PRK13169 DNA replication intiation control protein YabA; Reviewed

Probab=83.10  E-value=6.9  Score=30.10  Aligned_cols=49  Identities=33%  Similarity=0.483  Sum_probs=35.2

Q ss_pred             HHHHHHHHHHHhhHHHHHHHhhhhchHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 026043          122 LEELEQLERQLGSSLGRVRSLKTRNQLDKLSELQRKEEMLLEANNILSMKLEEI  175 (244)
Q Consensus       122 ~~EL~~LE~qLe~sL~~IR~rK~ql~~~~i~~L~~ke~~L~eeN~~L~~kl~e~  175 (244)
                      ++.|.+||+++...+..+..-|.++     .+|-..-..|+-||..|+..+.+.
T Consensus         7 fd~l~~le~~l~~l~~el~~LK~~~-----~el~EEN~~L~iEN~~Lr~~l~~~   55 (110)
T PRK13169          7 FDALDDLEQNLGVLLKELGALKKQL-----AELLEENTALRLENDKLRERLEEL   55 (110)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHh
Confidence            3577888998888888777666443     455555667777788888887764

>PF06156 DUF972: Protein of unknown function (DUF972); InterPro: IPR010377 FUNCTION: Involved in initiation control of chromosome replication

Probab=82.87  E-value=7.6  Score=29.69  Aligned_cols=49  Identities=37%  Similarity=0.496  Sum_probs=30.7

Q ss_pred             HHHHHHHHHHhhHHHHHHHhhhhchHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 026043          123 EELEQLERQLGSSLGRVRSLKTRNQLDKLSELQRKEEMLLEANNILSMKLEEIN  176 (244)
Q Consensus       123 ~EL~~LE~qLe~sL~~IR~rK~ql~~~~i~~L~~ke~~L~eeN~~L~~kl~e~~  176 (244)
                      +.|.+||++|..-+..|..-|.++     ..|-..-..|.-||..|+..|.+..
T Consensus         8 ~~l~~le~~l~~l~~~~~~LK~~~-----~~l~EEN~~L~~EN~~Lr~~l~~~~   56 (107)
T PF06156_consen    8 DRLDQLEQQLGQLLEELEELKKQL-----QELLEENARLRIENEHLRERLEELE   56 (107)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            567778888877777666555433     3444445556666666666666644

SUBUNIT: Interacts with both DnaA and DnaN, acting as a bridge between these two proteins. SIMILARITY: Belongs to the YabA family.

>PRK15422 septal ring assembly protein ZapB; Provisional

Probab=82.40  E-value=12  Score=27.04  Aligned_cols=45  Identities=20%  Similarity=0.287  Sum_probs=33.0

Q ss_pred             CCHHHHHHHHHHHhhHHHHHHHhhhhchHHHHHHHHHHHHHHHHHHHHHH
Q 026043          120 LGLEELEQLERQLGSSLGRVRSLKTRNQLDKLSELQRKEEMLLEANNILS  169 (244)
Q Consensus       120 Ls~~EL~~LE~qLe~sL~~IR~rK~ql~~~~i~~L~~ke~~L~eeN~~L~  169 (244)
                      ||++=|.+||..+..++..|-     ++.-+|++|+.|-..|.+++..++
T Consensus         1 MS~EvleqLE~KIqqAvdtI~-----LLqmEieELKekn~~L~~e~~~~~   45 (79)
T PRK15422          1 MSLEVFEKLEAKVQQAIDTIT-----LLQMEIEELKEKNNSLSQEVQNAQ   45 (79)
T ss_pred             CcHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHH
Confidence            577888999999999888875     555666777777666666655533

>PF01166 TSC22: TSC-22/dip/bun family; InterPro: IPR000580 Several eukaryotic proteins are evolutionary related and are thought to be involved in transcriptional regulation

Probab=82.05  E-value=2.6  Score=28.63  Aligned_cols=25  Identities=28%  Similarity=0.441  Sum_probs=16.4

Q ss_pred             chHHHHHHHHHHHHHHHHHHHHHHH
Q 026043          146 NQLDKLSELQRKEEMLLEANNILSM  170 (244)
Q Consensus       146 l~~~~i~~L~~ke~~L~eeN~~L~~  170 (244)
                      .+.++|.+|..+...|+.||..|+.
T Consensus        18 vLK~~I~eL~~~n~~Le~EN~~Lk~   42 (59)
T PF01166_consen   18 VLKEQIAELEERNSQLEEENNLLKQ   42 (59)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            4556666666666666666666665

These proteins are highly similar in a region of about 50 residues that include a conserved leucine-zipper domain most probably involved in homo- or hetero-dimerisation. Proteins containing this signature include: Vertebrate protein TSC-22 [], a transcriptional regulator which seems to act on C-type natriuretic peptide (CNP) promoter. Mammalian protein DIP (DSIP-immunoreactive peptide) [], a protein whose function is not yet known. Drosophila protein bunched [] (gene bun) (also known as shortsighted), a probable transcription factor required for peripheral nervous system morphogenesis, eye development and oogenesis. Caenorhabditis elegans hypothetical protein T18D3.7. ; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0006355 regulation of transcription, DNA-dependent; PDB: 1DIP_B.

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	244
3kov_A	90	Structure Of Mef2a Bound To Dna Reveals A Completel		1e-17
1tqe_P	93	Mechanism Of Recruitment Of Class Ii Histone Deacet		2e-17
1egw_A	77	Crystal Structure Of Mef2a Core Bound To Dna Length		2e-17
1c7u_A	85	Complex Of The Dna Binding Core Domain Of The Trans		3e-17
1n6j_A	93	Structural Basis Of Sequence-Specific Recruitment O		1e-16
3mu6_A	71	Inhibiting The Binding Of Class Iia Histone Deacety		2e-16
1mnm_A	100	Yeast Matalpha2MCM1DNA TERNARY TRANSCRIPTION COMPLE		4e-11
1k6o_B	103	Crystal Structure Of A Ternary Sap-1SRFC-Fos Sre Dn		6e-10
1srs_A	92	Serum Response Factor (Srf) Core Complexed With Spe		8e-10

>pdb|3KOV|A Chain A, Structure Of Mef2a Bound To Dna Reveals A Completely Folded Mads-BoxMEF2 DOMAIN THAT RECOGNIZES DNA AND RECRUITS Transcription Co-Factors Length = 90

Iteration: 1
 Score = 86.3 bits (212), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 41/69 (59%), Positives = 54/69 (78%), Gaps = 1/69 (1%)
Query: 2  GRGKVELKRIENKINRQVTFAKRRNGLLKKAYELSVLCDAEVALIIFSSRGKLYEFCSSP 61
          GR K+++ RI ++ NRQVTF KR+ GL+KKAYELSVLCD E+ALIIF+S  KL+++ +S 
Sbjct: 1  GRKKIQITRIMDERNRQVTFTKRKFGLMKKAYELSVLCDCEIALIIFNSSNKLFQY-AST 59
Query: 62 SMHKTLEKY 70
           M K L KY
Sbjct: 60 DMDKVLLKY 68

>pdb|1TQE|P Chain P, Mechanism Of Recruitment Of Class Ii Histone Deacetylases By Myocyte Enhancer Factor-2 Length = 93

Iteration: 1
 Score = 86.3 bits (212), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 40/70 (57%), Positives = 55/70 (78%), Gaps = 1/70 (1%)
Query: 1  MGRGKVELKRIENKINRQVTFAKRRNGLLKKAYELSVLCDAEVALIIFSSRGKLYEFCSS 60
          MGR K+++ RI ++ NRQVTF KR+ GL+KKAYELSVLCD E+ALIIF+S  +L+++ +S
Sbjct: 1  MGRKKIQISRILDQRNRQVTFTKRKFGLMKKAYELSVLCDCEIALIIFNSANRLFQY-AS 59
Query: 61 PSMHKTLEKY 70
            M + L KY
Sbjct: 60 TDMDRVLLKY 69

>pdb|1EGW|A Chain A, Crystal Structure Of Mef2a Core Bound To Dna Length = 77

Iteration: 1
 Score = 85.9 bits (211), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 41/69 (59%), Positives = 54/69 (78%), Gaps = 1/69 (1%)
Query: 2  GRGKVELKRIENKINRQVTFAKRRNGLLKKAYELSVLCDAEVALIIFSSRGKLYEFCSSP 61
          GR K+++ RI ++ NRQVTF KR+ GL+KKAYELSVLCD E+ALIIF+S  KL+++ +S 
Sbjct: 1  GRKKIQITRIMDERNRQVTFTKRKFGLMKKAYELSVLCDCEIALIIFNSSNKLFQY-AST 59
Query: 62 SMHKTLEKY 70
           M K L KY
Sbjct: 60 DMDKVLLKY 68

>pdb|1C7U|A Chain A, Complex Of The Dna Binding Core Domain Of The Transcription Factor Mef2a With A 20mer Oligonucleotide Length = 85

Iteration: 1
 Score = 85.1 bits (209), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 41/69 (59%), Positives = 54/69 (78%), Gaps = 1/69 (1%)
Query: 2  GRGKVELKRIENKINRQVTFAKRRNGLLKKAYELSVLCDAEVALIIFSSRGKLYEFCSSP 61
          GR K+++ RI ++ NRQVTF KR+ GL+KKAYELSVL DAE+ALIIF+S  KL+++ S+ 
Sbjct: 1  GRKKIQITRIMDERNRQVTFTKRKFGLMKKAYELSVLADAEIALIIFNSSNKLFQYAST- 59
Query: 62 SMHKTLEKY 70
           M K L KY
Sbjct: 60 DMDKVLLKY 68

>pdb|1N6J|A Chain A, Structural Basis Of Sequence-Specific Recruitment Of Histone Deacetylases By Myocyte Enhancer Factor-2 Length = 93

Iteration: 1
 Score = 83.6 bits (205), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 39/69 (56%), Positives = 54/69 (78%), Gaps = 1/69 (1%)
Query: 2  GRGKVELKRIENKINRQVTFAKRRNGLLKKAYELSVLCDAEVALIIFSSRGKLYEFCSSP 61
          GR K+++ RI ++ NRQVTF KR+ GL+KKAYELSVLCD E+ALIIF+S  +L+++ +S 
Sbjct: 1  GRKKIQISRILDQRNRQVTFTKRKFGLMKKAYELSVLCDCEIALIIFNSANRLFQY-AST 59
Query: 62 SMHKTLEKY 70
           M + L KY
Sbjct: 60 DMDRVLLKY 68

>pdb|3MU6|A Chain A, Inhibiting The Binding Of Class Iia Histone Deacetylases To Myocyte Enhancer Factor-2 By Small Molecules Length = 71

Iteration: 1
 Score = 82.8 bits (203), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 41/69 (59%), Positives = 54/69 (78%), Gaps = 1/69 (1%)
Query: 2  GRGKVELKRIENKINRQVTFAKRRNGLLKKAYELSVLCDAEVALIIFSSRGKLYEFCSSP 61
          GR K+++ RI ++ NRQVTF KR+ GL+KKAYELSVLCD E+ALIIF+S  KL+++ S+ 
Sbjct: 1  GRKKIQITRIMDERNRQVTFTKRKFGLMKKAYELSVLCDCEIALIIFNSSNKLFQYAST- 59
Query: 62 SMHKTLEKY 70
           M K L KY
Sbjct: 60 DMDKVLLKY 68

>pdb|1MNM|A Chain A, Yeast Matalpha2MCM1DNA TERNARY TRANSCRIPTION COMPLEX Crystal Structure Length = 100

Iteration: 1
 Score = 65.1 bits (157), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 32/69 (46%), Positives = 47/69 (68%), Gaps = 1/69 (1%)
Query: 3  RGKVELKRIENKINRQVTFAKRRNGLLKKAYELSVLCDAEVALIIFSSRGKLYEFCSSPS 62
          R K+E+K IENK  R VTF+KR++G++KKA+ELSVL   +V L++ S  G +Y F S+P 
Sbjct: 18 RRKIEIKFIENKTRRHVTFSKRKHGIMKKAFELSVLTGTQVLLLVVSETGLVYTF-STPK 76
Query: 63 MHKTLEKYE 71
              + + E
Sbjct: 77 FEPIVTQQE 85

>pdb|1K6O|B Chain B, Crystal Structure Of A Ternary Sap-1SRFC-Fos Sre Dna Complex Length = 103

Iteration: 1
 Score = 61.2 bits (147), Expect = 6e-10,   Method: Compositional matrix adjust.
 Identities = 26/58 (44%), Positives = 41/58 (70%)
Query: 2  GRGKVELKRIENKINRQVTFAKRRNGLLKKAYELSVLCDAEVALIIFSSRGKLYEFCS 59
          GR K++++ I+NK+ R  TF+KR+ G++KKAYELS L   +V L++ S  G +Y F +
Sbjct: 10 GRVKIKMEFIDNKLRRYTTFSKRKTGIMKKAYELSTLTGTQVLLLVASETGHVYTFAT 67

>pdb|1SRS|A Chain A, Serum Response Factor (Srf) Core Complexed With Specific Sre Dna Length = 92

Iteration: 1
 Score = 60.5 bits (145), Expect = 8e-10,   Method: Compositional matrix adjust.
 Identities = 26/58 (44%), Positives = 41/58 (70%)
Query: 2  GRGKVELKRIENKINRQVTFAKRRNGLLKKAYELSVLCDAEVALIIFSSRGKLYEFCS 59
          GR K++++ I+NK+ R  TF+KR+ G++KKAYELS L   +V L++ S  G +Y F +
Sbjct: 11 GRVKIKMEFIDNKLRRYTTFSKRKTGIMKKAYELSTLTGTQVLLLVASETGHVYTFAT 68

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	244
3p57_A	90	Myocyte-specific enhancer factor 2A; protein-DNA c	1e-45
1hbx_A	92	SRF, serum response factor; gene regulation, trans	2e-44
1mnm_A	100	Protein (MCM1 transcriptional regulator); transcri	3e-44
1egw_A	77	MADS box transcription enhancer factor 2, polypept	1e-43
1k6o_B	103	SRF, serum response factor; protein/DNA complex, t	5e-43

>3p57_A Myocyte-specific enhancer factor 2A; protein-DNA complex, transcription factor, transcriptional activation, zinc finger; HET: DNA; 2.19A {Homo sapiens} PDB: 3kov_A* 1tqe_P 1n6j_A Length = 90

 Score =  146 bits (371), Expect = 1e-45
 Identities = 42/88 (47%), Positives = 57/88 (64%), Gaps = 1/88 (1%)

Query: 2  GRGKVELKRIENKINRQVTFAKRRNGLLKKAYELSVLCDAEVALIIFSSRGKLYEFCSSP 61
          GR K+++ RI ++ NRQVTF KR+ GL+KKAYELSVLCD E+ALIIF+S  KL+++ S+ 
Sbjct: 1  GRKKIQITRIMDERNRQVTFTKRKFGLMKKAYELSVLCDCEIALIIFNSSNKLFQYAST- 59

Query: 62 SMHKTLEKYERCSYGTLQANHQSAKETQ 89
           M K L KY   +       +    E  
Sbjct: 60 DMDKVLLKYTEYNEPHESRTNSDIVEAL 87

>1hbx_A SRF, serum response factor; gene regulation, transcription complex; 3.15A {Homo sapiens} SCOP: d.88.1.1 PDB: 1srs_A* Length = 92

 Score =  143 bits (362), Expect = 2e-44
 Identities = 27/81 (33%), Positives = 45/81 (55%), Gaps = 1/81 (1%)

Query: 1  MGRGKVELKRIENKINRQVTFAKRRNGLLKKAYELSVLCDAEVALIIFSSRGKLYEFCSS 60
           GR K++++ I+NK+ R  TF+KR+ G++KKAYELS L   +V L++ S  G +Y F  +
Sbjct: 10 RGRVKIKMEFIDNKLRRYTTFSKRKTGIMKKAYELSTLTGTQVLLLVASETGHVYTFA-T 68

Query: 61 PSMHKTLEKYERCSYGTLQAN 81
            +   +      +      N
Sbjct: 69 RKLQPMITSETGKALIQTCLN 89

>1mnm_A Protein (MCM1 transcriptional regulator); transcription regulation, transcriptional repression, DNA- binding protein; HET: DNA; 2.25A {Saccharomyces cerevisiae} SCOP: d.88.1.1 Length = 100

 Score =  143 bits (362), Expect = 3e-44
 Identities = 32/81 (39%), Positives = 48/81 (59%), Gaps = 1/81 (1%)

Query: 1  MGRGKVELKRIENKINRQVTFAKRRNGLLKKAYELSVLCDAEVALIIFSSRGKLYEFCSS 60
            R K+E+K IENK  R VTF+KR++G++KKA+ELSVL   +V L++ S  G +Y F  +
Sbjct: 16 KERRKIEIKFIENKTRRHVTFSKRKHGIMKKAFELSVLTGTQVLLLVVSETGLVYTFS-T 74

Query: 61 PSMHKTLEKYERCSYGTLQAN 81
          P     + + E  +      N
Sbjct: 75 PKFEPIVTQQEGRNLIQACLN 95

>1egw_A MADS box transcription enhancer factor 2, polypeptide A; MADS-box transcription factor, DNA/protein complex, transcription/DNA; HET: DNA; 1.50A {Homo sapiens} SCOP: d.88.1.1 PDB: 1c7u_A 3mu6_A* Length = 77

 Score =  140 bits (356), Expect = 1e-43
 Identities = 41/73 (56%), Positives = 55/73 (75%), Gaps = 1/73 (1%)

Query: 2  GRGKVELKRIENKINRQVTFAKRRNGLLKKAYELSVLCDAEVALIIFSSRGKLYEFCSSP 61
          GR K+++ RI ++ NRQVTF KR+ GL+KKAYELSVLCD E+ALIIF+S  KL+++ S+ 
Sbjct: 1  GRKKIQITRIMDERNRQVTFTKRKFGLMKKAYELSVLCDCEIALIIFNSSNKLFQYAST- 59

Query: 62 SMHKTLEKYERCS 74
           M K L KY   +
Sbjct: 60 DMDKVLLKYTEYN 72

>1k6o_B SRF, serum response factor; protein/DNA complex, transcription factor, combinatorial gene regulation, ETS proteins, MADS-box proteins; 3.19A {Homo sapiens} SCOP: d.88.1.1 Length = 103

 Score =  140 bits (354), Expect = 5e-43
 Identities = 27/81 (33%), Positives = 45/81 (55%), Gaps = 1/81 (1%)

Query: 1  MGRGKVELKRIENKINRQVTFAKRRNGLLKKAYELSVLCDAEVALIIFSSRGKLYEFCSS 60
           GR K++++ I+NK+ R  TF+KR+ G++KKAYELS L   +V L++ S  G +Y F  +
Sbjct: 9  RGRVKIKMEFIDNKLRRYTTFSKRKTGIMKKAYELSTLTGTQVLLLVASETGHVYTFA-T 67

Query: 61 PSMHKTLEKYERCSYGTLQAN 81
            +   +      +      N
Sbjct: 68 RKLQPMITSETGKALIQTCLN 88

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	244
1egw_A	77	MADS box transcription enhancer factor 2, polypept	100.0
3p57_A	90	Myocyte-specific enhancer factor 2A; protein-DNA c	100.0
1mnm_A	100	Protein (MCM1 transcriptional regulator); transcri	100.0
1hbx_A	92	SRF, serum response factor; gene regulation, trans	100.0
1k6o_B	103	SRF, serum response factor; protein/DNA complex, t	100.0
2jee_A	81	YIIU; FTSZ, septum, coiled-coil, cell division, ce	88.68
2w6a_A	63	ARF GTPase-activating protein GIT1; PIX, zinc, sig	87.49

>1egw_A MADS box transcription enhancer factor 2, polypeptide A; MADS-box transcription factor, DNA/protein complex, transcription/DNA; HET: DNA; 1.50A {Homo sapiens} SCOP: d.88.1.1 PDB: 1c7u_A 3mu6_A*

Probab=100.00  E-value=4.4e-40  Score=235.95  Aligned_cols=73  Identities=56%  Similarity=0.904  Sum_probs=69.4

Q ss_pred             CccccceeeecCCCCcceeccccccchhhhhhhhhcccCcceeeeeecCCCCcccccCCCccchhhhhhhhccc
Q 026043            2 GRGKVELKRIENKINRQVTFAKRRNGLLKKAYELSVLCDAEVALIIFSSRGKLYEFCSSPSMHKTLEKYERCSY   75 (244)
Q Consensus         2 gR~Ki~ik~Ien~~~RqvTFsKRr~GL~KKA~ELSvLCdaeValIvfS~~Gkl~ef~s~~sm~~iLeRY~~~~~   75 (244)
                      ||+||+|++|||+++|||||+|||+||||||+||||||||||||||||++||+|+|+|+ +|++||+||++++.
T Consensus         1 GR~Ki~ik~I~n~~~R~vTfsKRr~GL~KKA~ELsvLCdaeV~livfs~~gk~~~~~s~-~~~~il~ry~~~~~   73 (77)
T 1egw_A            1 GRKKIQITRIMDERNRQVTFTKRKFGLMKKAYELSVLCDCEIALIIFNSSNKLFQYAST-DMDKVLLKYTEYNE   73 (77)
T ss_dssp             CCSCCCSSCCCSHHHHHHHHHHHHHHHHHHHHHHHHHTTCEEEEEEECTTCCEEEEESS-CHHHHHHHHHHC--
T ss_pred             CCceeeeEEecCchHHHHHHHHhHHHHHHHHHHHhcccCCeEEEEEECCCCCEeeCCCC-CHHHHHHHHHhccC
Confidence            89999999999999999999999999999999999999999999999999999999975 89999999998764

>3p57_A Myocyte-specific enhancer factor 2A; protein-DNA complex, transcription factor, transcriptional activation, zinc finger; HET: DNA; 2.19A {Homo sapiens} PDB: 3kov_A* 1tqe_P 1n6j_A

Probab=100.00  E-value=2.3e-39  Score=237.85  Aligned_cols=76  Identities=54%  Similarity=0.848  Sum_probs=72.5

Q ss_pred             CccccceeeecCCCCcceeccccccchhhhhhhhhcccCcceeeeeecCCCCcccccCCCccchhhhhhhhcccccc
Q 026043            2 GRGKVELKRIENKINRQVTFAKRRNGLLKKAYELSVLCDAEVALIIFSSRGKLYEFCSSPSMHKTLEKYERCSYGTL   78 (244)
Q Consensus         2 gR~Ki~ik~Ien~~~RqvTFsKRr~GL~KKA~ELSvLCdaeValIvfS~~Gkl~ef~s~~sm~~iLeRY~~~~~~~~   78 (244)
                      ||+||+|++|||+++|||||+|||+||||||+|||||||||||||||||+||+|+|+|+ +|.+||+||++++....
T Consensus         1 GR~Ki~ik~Ien~~~R~vTFsKRr~GL~KKA~ELsvLCda~Valiifs~~gk~~~f~s~-~~~~il~rY~~~~~~~~   76 (90)
T 3p57_A            1 GRKKIQITRIMDERNRQVTFTKRKFGLMKKAYELSVLCDCEIALIIFNSSNKLFQYAST-DMDKVLLKYTEYNEPHE   76 (90)
T ss_dssp             CCSCCCSSCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHTCEEEEEEECTTCCEEEEESS-CHHHHHHHHHHCCSCCC
T ss_pred             CCCcceeEEecCchHHHHHHHHhhhhHHHHHHHHHhccCCceEEEEECCCCCEEEeCCC-CHHHHHHHHHhcCcccc
Confidence            89999999999999999999999999999999999999999999999999999999984 89999999999876544

>1mnm_A Protein (MCM1 transcriptional regulator); transcription regulation, transcriptional repression, DNA- binding protein; HET: DNA; 2.25A {Saccharomyces cerevisiae} SCOP: d.88.1.1

Probab=100.00  E-value=2.4e-38  Score=236.20  Aligned_cols=74  Identities=41%  Similarity=0.660  Sum_probs=70.6

Q ss_pred             CCccccceeeecCCCCcceeccccccchhhhhhhhhcccCcceeeeeecCCCCcccccCCCccchhhhhhhhccc
Q 026043            1 MGRGKVELKRIENKINRQVTFAKRRNGLLKKAYELSVLCDAEVALIIFSSRGKLYEFCSSPSMHKTLEKYERCSY   75 (244)
Q Consensus         1 MgR~Ki~ik~Ien~~~RqvTFsKRr~GL~KKA~ELSvLCdaeValIvfS~~Gkl~ef~s~~sm~~iLeRY~~~~~   75 (244)
                      |||+||+|++|||+++|||||+|||+||||||+||||||||+|||||||++||+|+|+|+ +|..||+||.....
T Consensus        16 mgR~Ki~ik~Ien~~~R~vTFsKRr~GL~KKA~ELsvLCda~Valivfs~~gk~~~f~sp-s~~~il~r~~G~~l   89 (100)
T 1mnm_A           16 KERRKIEIKFIENKTRRHVTFSKRKHGIMKKAFELSVLTGTQVLLLVVSETGLVYTFSTP-KFEPIVTQQEGRNL   89 (100)
T ss_dssp             CCCCCCCSSCCCSHHHHHHHHHHHHHHHHHHHHHHHHHHTCEEEEEEECTTCCEEEEECT-TTTHHHHSHHHHHH
T ss_pred             CCccceeeEEecCcchhhhhhhHhhhhHHHHHHHHHHhcCCcEEEEEecCCCCcceecCC-CHHHHHHHhhCCcH
Confidence            899999999999999999999999999999999999999999999999999999999986 89999999976543

>1hbx_A SRF, serum response factor; gene regulation, transcription complex; 3.15A {Homo sapiens} SCOP: d.88.1.1 PDB: 1srs_A*

Probab=100.00  E-value=1.9e-37  Score=228.53  Aligned_cols=70  Identities=37%  Similarity=0.672  Sum_probs=67.7

Q ss_pred             CCccccceeeecCCCCcceeccccccchhhhhhhhhcccCcceeeeeecCCCCcccccCCCccchhhhhhh
Q 026043            1 MGRGKVELKRIENKINRQVTFAKRRNGLLKKAYELSVLCDAEVALIIFSSRGKLYEFCSSPSMHKTLEKYE   71 (244)
Q Consensus         1 MgR~Ki~ik~Ien~~~RqvTFsKRr~GL~KKA~ELSvLCdaeValIvfS~~Gkl~ef~s~~sm~~iLeRY~   71 (244)
                      |||+||+|++|||+++|||||+|||+||||||+||||||||||||||||++|++|+|+|+ +|..+|++|.
T Consensus        10 mgR~Ki~ik~Ien~~~R~vTFsKRr~GL~KKA~ELsvLCda~V~livfs~~gk~~~f~s~-~~~~~i~~~~   79 (92)
T 1hbx_A           10 RGRVKIKMEFIDNKLRRYTTFSKRKTGIMKKAYELSTLTGTQVLLLVASETGHVYTFATR-KLQPMITSET   79 (92)
T ss_dssp             CCSCCCCSSCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCEEEEEEECTTSCEEEEECG-GGGGGTSSHH
T ss_pred             CCcceEEEEEecChhHHHHHHHHhhhhHHHHHHHHHhhcCCceEEEEECCCCCEEEecCC-CHHHHHhhhc
Confidence            999999999999999999999999999999999999999999999999999999999975 8999999774

>1k6o_B SRF, serum response factor; protein/DNA complex, transcription factor, combinatorial gene regulation, ETS proteins, MADS-box proteins; 3.19A {Homo sapiens} SCOP: d.88.1.1

Probab=100.00  E-value=4.2e-37  Score=230.91  Aligned_cols=76  Identities=34%  Similarity=0.632  Sum_probs=70.6

Q ss_pred             CCccccceeeecCCCCcceeccccccchhhhhhhhhcccCcceeeeeecCCCCcccccCCCccchhhhh-----hhhccc
Q 026043            1 MGRGKVELKRIENKINRQVTFAKRRNGLLKKAYELSVLCDAEVALIIFSSRGKLYEFCSSPSMHKTLEK-----YERCSY   75 (244)
Q Consensus         1 MgR~Ki~ik~Ien~~~RqvTFsKRr~GL~KKA~ELSvLCdaeValIvfS~~Gkl~ef~s~~sm~~iLeR-----Y~~~~~   75 (244)
                      |||+||+|++|||+++|||||+|||+||||||+||||||||+|||||||++|++|+|+|+ +|..+|++     |..++.
T Consensus         9 mgR~Ki~ik~Ien~~~R~vTFsKRr~GL~KKA~ELsvLCda~Valivfs~~gk~~~f~s~-~~~~vi~~~~Gk~l~~~c~   87 (103)
T 1k6o_B            9 RGRVKIKMEFIDNKLRRYTTFSKRKTGIMKKAYELSTLTGTQVLLLVASETGHVYTFATR-KLQPMITSETGKALIQTCL   87 (103)
T ss_dssp             CCSCCCCSSCCCCHHHHHHHHHHHHHHHHHHHHHHHHHTTCEEEEEEECSSSCEEEEECG-GGGGGTSSHHHHHHHHHTT
T ss_pred             CCcceeEEEEecCchHHHHhHhHhhHhHHHHHHHHHhhhCCceEEEEEeCCCCeeeecCc-cHHHHHHhhhhhHHHHHHh
Confidence            999999999999999999999999999999999999999999999999999999999975 89999998     555554


Q ss_pred             cc
Q 026043           76 GT   77 (244)
Q Consensus        76 ~~   77 (244)
                      ..
T Consensus        88 ~~   89 (103)
T 1k6o_B           88 NS   89 (103)
T ss_dssp             CC
T ss_pred             cC
Confidence            43

>2jee_A YIIU; FTSZ, septum, coiled-coil, cell division, cell cycle, hypothetical protein; 2.8A {Escherichia coli}

Probab=88.68  E-value=3.3  Score=29.04  Aligned_cols=46  Identities=20%  Similarity=0.272  Sum_probs=35.9

Q ss_pred             CCHHHHHHHHHHHhhHHHHHHHhhhhchHHHHHHHHHHHHHHHHHHHHHHH
Q 026043          120 LGLEELEQLERQLGSSLGRVRSLKTRNQLDKLSELQRKEEMLLEANNILSM  170 (244)
Q Consensus       120 Ls~~EL~~LE~qLe~sL~~IR~rK~ql~~~~i~~L~~ke~~L~eeN~~L~~  170 (244)
                      +|++=|.+||..++.++..|-     ++.-+|++|+.|-..|.++|..++.
T Consensus         3 MS~ElleqLE~KIq~avdtI~-----lLqmEieELKekN~~L~~e~~e~~~   48 (81)
T 2jee_A            3 MSLEVFEKLEAKVQQAIDTIT-----LLQMEIEELKEKNNSLSQEVQNAQH   48 (81)
T ss_dssp             CCHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             CcHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            788889999999999998875     5666778888877776666666444

>2w6a_A ARF GTPase-activating protein GIT1; PIX, zinc, signaling protein, CAT-1, cytoplasm, ANK repeat, coiled-coil, zinc-finger, metal-binding; 1.40A {Rattus norvegicus}

Probab=87.49  E-value=4.1  Score=26.71  Aligned_cols=53  Identities=28%  Similarity=0.340  Sum_probs=38.4

Q ss_pred             CCCCHHHHHHHHHHHhhHHHHHHH--hhhhchHHHHHHHHHHHHHHHHHHHHHHH
Q 026043          118 GRLGLEELEQLERQLGSSLGRVRS--LKTRNQLDKLSELQRKEEMLLEANNILSM  170 (244)
Q Consensus       118 ~~Ls~~EL~~LE~qLe~sL~~IR~--rK~ql~~~~i~~L~~ke~~L~eeN~~L~~  170 (244)
                      ++.++.|..++-..|-.+=.+|..  +-+.-+.+++.-||++.+.|+.||..|+.
T Consensus         8 gpit~qeylevK~ALaaSeAkiQQLmkVN~~ls~Elr~mQ~~lq~LQsen~~Lr~   62 (63)
T 2w6a_A            8 GAVTLQEYLELKKALATSEAKVQQLMKVNSSLSDELRKLQREIHKLQAENLQLRQ   62 (63)
T ss_dssp             CSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred             CcchHHHHHHHHHHHHhhHHHHHHHHHHhHhhhHHHHHHHHHHHHHHhhhhhhcc
Confidence            456777777777777666555542  23445678888899999999999998874

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	244
d1srsa_	84	d.88.1.1 (A:) Serum response factor (SRF) core {Hu	3e-38
d1mnma_	85	d.88.1.1 (A:) MCM1 transcriptional regulator {Bake	5e-38
d1egwa_	71	d.88.1.1 (A:) Myocyte enhancer factor Mef2a core {	6e-38

>d1srsa_ d.88.1.1 (A:) Serum response factor (SRF) core {Human (Homo sapiens) [TaxId: 9606]} Length = 84

class: Alpha and beta proteins (a+b)
fold: SRF-like
superfamily: SRF-like
family: SRF-like
domain: Serum response factor (SRF) core
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  126 bits (318), Expect = 3e-38
 Identities = 26/75 (34%), Positives = 44/75 (58%), Gaps = 1/75 (1%)

Query: 1  MGRGKVELKRIENKINRQVTFAKRRNGLLKKAYELSVLCDAEVALIIFSSRGKLYEFCSS 60
           GR K++++ I+NK+ R  TF+KR+ G++KKAYELS L   +V L++ S  G +Y F  +
Sbjct: 2  RGRVKIKMEFIDNKLRRYTTFSKRKTGIMKKAYELSTLTGTQVLLLVASETGHVYTFA-T 60

Query: 61 PSMHKTLEKYERCSY 75
            +   +      + 
Sbjct: 61 RKLQPMITSETGKAL 75

>d1mnma_ d.88.1.1 (A:) MCM1 transcriptional regulator {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 85

class: Alpha and beta proteins (a+b)
fold: SRF-like
superfamily: SRF-like
family: SRF-like
domain: MCM1 transcriptional regulator
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score =  125 bits (316), Expect = 5e-38
 Identities = 31/74 (41%), Positives = 47/74 (63%), Gaps = 1/74 (1%)

Query: 2  GRGKVELKRIENKINRQVTFAKRRNGLLKKAYELSVLCDAEVALIIFSSRGKLYEFCSSP 61
           R K+E+K IENK  R VTF+KR++G++KKA+ELSVL   +V L++ S  G +Y F  +P
Sbjct: 3  ERRKIEIKFIENKTRRHVTFSKRKHGIMKKAFELSVLTGTQVLLLVVSETGLVYTFS-TP 61

Query: 62 SMHKTLEKYERCSY 75
               + + E  + 
Sbjct: 62 KFEPIVTQQEGRNL 75

>d1egwa_ d.88.1.1 (A:) Myocyte enhancer factor Mef2a core {Human (Homo sapiens) [TaxId: 9606]} Length = 71

class: Alpha and beta proteins (a+b)
fold: SRF-like
superfamily: SRF-like
family: SRF-like
domain: Myocyte enhancer factor Mef2a core
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  125 bits (315), Expect = 6e-38
 Identities = 41/71 (57%), Positives = 53/71 (74%), Gaps = 1/71 (1%)

Query: 2  GRGKVELKRIENKINRQVTFAKRRNGLLKKAYELSVLCDAEVALIIFSSRGKLYEFCSSP 61
          GR K+++ RI ++ NRQVTF KR+ GL+KKAYELSVLCD E+ALIIF+S  KL+++  S 
Sbjct: 1  GRKKIQITRIMDERNRQVTFTKRKFGLMKKAYELSVLCDCEIALIIFNSSNKLFQYA-ST 59

Query: 62 SMHKTLEKYER 72
           M K L KY  
Sbjct: 60 DMDKVLLKYTE 70

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	244
d1egwa_	71	Myocyte enhancer factor Mef2a core {Human (Homo sa	100.0
d1srsa_	84	Serum response factor (SRF) core {Human (Homo sapi	100.0
d1mnma_	85	MCM1 transcriptional regulator {Baker's yeast (Sac	100.0

>d1egwa_ d.88.1.1 (A:) Myocyte enhancer factor Mef2a core {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: SRF-like
superfamily: SRF-like
family: SRF-like
domain: Myocyte enhancer factor Mef2a core
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=6.9e-39  Score=224.28  Aligned_cols=71  Identities=58%  Similarity=0.938  Sum_probs=68.8

Q ss_pred             CccccceeeecCCCCcceeccccccchhhhhhhhhcccCcceeeeeecCCCCcccccCCCccchhhhhhhhc
Q 026043            2 GRGKVELKRIENKINRQVTFAKRRNGLLKKAYELSVLCDAEVALIIFSSRGKLYEFCSSPSMHKTLEKYERC   73 (244)
Q Consensus         2 gR~Ki~ik~Ien~~~RqvTFsKRr~GL~KKA~ELSvLCdaeValIvfS~~Gkl~ef~s~~sm~~iLeRY~~~   73 (244)
                      ||+||+|++|||+.+|+|||+|||+||||||+|||||||||||||||||+|++|+|+|+ ++++||+||+++
T Consensus         1 GR~Ki~ik~Ie~~~~R~vTFsKRk~GL~KKa~ELs~LC~~~valiv~s~~gk~~~f~s~-~~~~vl~ry~~~   71 (71)
T d1egwa_           1 GRKKIQITRIMDERNRQVTFTKRKFGLMKKAYELSVLCDCEIALIIFNSSNKLFQYAST-DMDKVLLKYTEY   71 (71)
T ss_dssp             CCSCCCSSCCCSHHHHHHHHHHHHHHHHHHHHHHHHHTTCEEEEEEECTTCCEEEEESS-CHHHHHHHHHHC
T ss_pred             CCccceEEeccCCchheeehhHhhhhHHHHHHHHhhccCCcEEEEEEcCCCCEEEeeCC-CHHHHHHHHhcC
Confidence            89999999999999999999999999999999999999999999999999999999985 899999999864

>d1srsa_ d.88.1.1 (A:) Serum response factor (SRF) core {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: SRF-like
superfamily: SRF-like
family: SRF-like
domain: Serum response factor (SRF) core
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=8.9e-37  Score=218.92  Aligned_cols=72  Identities=36%  Similarity=0.636  Sum_probs=69.1

Q ss_pred             CCccccceeeecCCCCcceeccccccchhhhhhhhhcccCcceeeeeecCCCCcccccCCCccchhhhhhhhc
Q 026043            1 MGRGKVELKRIENKINRQVTFAKRRNGLLKKAYELSVLCDAEVALIIFSSRGKLYEFCSSPSMHKTLEKYERC   73 (244)
Q Consensus         1 MgR~Ki~ik~Ien~~~RqvTFsKRr~GL~KKA~ELSvLCdaeValIvfS~~Gkl~ef~s~~sm~~iLeRY~~~   73 (244)
                      +||+||+|++|||+.+|+|||+|||+||||||+||||||||+||||||||+|++|+|+|+ +++.+|+||+..
T Consensus         2 ~GR~Ki~i~~Ie~~~~R~vTFsKRr~GL~KKa~ELs~Lc~~~v~liv~s~~gk~~~f~s~-~~~~vi~~~~~~   73 (84)
T d1srsa_           2 RGRVKIKMEFIDNKLRRYTTFSKRKTGIMKKAYELSTLTGTQVLLLVASETGHVYTFATR-KLQPMITSETGK   73 (84)
T ss_dssp             CCCCCCCSSCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCEEEEEEECTTCCEEEEECG-GGHHHHSSHHHH
T ss_pred             CCCceeeEEeecCcchhhhhhHHhhhhHHHHHHHHhcccCCcEEEEEEcCCCCEEEeeCC-CHHHHHHHHHHH
Confidence            699999999999999999999999999999999999999999999999999999999975 899999999754

>d1mnma_ d.88.1.1 (A:) MCM1 transcriptional regulator {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a+b)
fold: SRF-like
superfamily: SRF-like
family: SRF-like
domain: MCM1 transcriptional regulator
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=100.00  E-value=2e-36  Score=218.45  Aligned_cols=73  Identities=41%  Similarity=0.676  Sum_probs=69.8

Q ss_pred             CccccceeeecCCCCcceeccccccchhhhhhhhhcccCcceeeeeecCCCCcccccCCCccchhhhhhhhccc
Q 026043            2 GRGKVELKRIENKINRQVTFAKRRNGLLKKAYELSVLCDAEVALIIFSSRGKLYEFCSSPSMHKTLEKYERCSY   75 (244)
Q Consensus         2 gR~Ki~ik~Ien~~~RqvTFsKRr~GL~KKA~ELSvLCdaeValIvfS~~Gkl~ef~s~~sm~~iLeRY~~~~~   75 (244)
                      ||+||+|++|+|+.+|+|||+|||+||||||+||||||||+||||||||+|++|+|+|+ +|..||+||+..+.
T Consensus         3 ~R~Ki~i~~I~~~~~R~vTFsKRr~GL~KKa~ELsvLc~a~vaviv~s~~gk~~~f~sp-~v~~vl~r~~~~~~   75 (85)
T d1mnma_           3 ERRKIEIKFIENKTRRHVTFSKRKHGIMKKAFELSVLTGTQVLLLVVSETGLVYTFSTP-KFEPIVTQQEGRNL   75 (85)
T ss_dssp             CCCCCCSSCCCSHHHHHHHHHHHHHHHHHHHHHHHHHHTCEEEEEEECTTCCEEEEECT-TTTHHHHSHHHHHH
T ss_pred             CccceEEEEecCCchhhhhhHHHHhhHHHHHHHHhccCCCcEEEEEEcCCCCEEeccCC-CHHHHHHHHhcccH
Confidence            89999999999999999999999999999999999999999999999999999999975 89999999987543