Citrus Sinensis ID: 026049

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240----
MMSTGELLNIEPQELQFPFELRKQISCSLQLSNKTDNYVAFKVKTTNPKKYCVRPNTGVVLPRSTCDVIVTMQSQKEAPPDMQCKDKFLLQGVVASPGATAKDITPEMFNKEAGHHVEECKLRVLYVAPPRPPSPVHEGSEEGSSPRASVSDNGNFSASEFSAAASRAFVEQYEPQDKSTEARALISKLTEEKNSVIQINNKLQQELVRTYLCHSSFKRPFSPEVCMMSLWFRNQLSYTDICIL
cccccccEEEEcccEEEccccccEEEEEEEEEcccccEEEEEEEEcccccEEEEcccEEEccccEEEEEEEcccccccccccccccEEEEEEEEcccccccccccccccccccccEEEEEEEEEEEEccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccHHHHHHHHHHHHHHHHHHHEEcc
ccccccEEEEcccHccccccccEEEEEEEEEEcccccEEEEEEEccccccEEEcccccEEcccccEEEEEEEcccccccccccccccEEEEEEEEcccccHHHccHHHHHHcccccEEHcEEEEEEEcccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccHHHHHHHHHHHHHcccccEEEc
mmstgellniepqelqfpfeLRKQISCSlqlsnktdnYVAFKVkttnpkkycvrpntgvvlprstCDVIVTMqsqkeappdmqckdkfllqgvvaspgatakditpemfnkeaghhveeCKLRvlyvapprppspvhegseegssprasvsdngnfsasEFSAAASRAFVeqyepqdkSTEARALISKLTEEKNSVIQINNKLQQELVRTYLchssfkrpfspevcmmslwfrnqlsytdicil
mmstgellniepQELQFPFELRKQISCSLQLSNKTDNYVAFKvkttnpkkycvrpntgvvlprsTCDVIVTMQsqkeappdmqCKDKFLLQGVVASPGATAKDITPEMFNKEAGHHVEECKLRVLYVAPPRPPSPVhegseegssprasVSDNGNFSASEFSAAASRAFVEQYEPQDKSTEARALISKlteeknsviQINNKLQQELVRTYLCHSSFKRPFSPEVCMMSLWfrnqlsytdicil
MMSTGELLNIEPQELQFPFELRKQISCSLQLSNKTDNYVAFKVKTTNPKKYCVRPNTGVVLPRSTCDVIVTMQSQKEAPPDMQCKDKFLLQGVVASPGATAKDITPEMFNKEAGHHVEECKLRVLYVAPPRPPSPVHEGSEEGSSPRASVSDNGNfsasefsaaasrafVEQYEPQDKSTEARALISKLTEEKNSVIQINNKLQQELVRTYLCHSSFKRPFSPEVCMMSLWFRNQLSYTDICIL
**************LQFPFELRKQISCSLQLSNKTDNYVAFKVKTTNPKKYCVRPNTGVVLPRSTCDVIVTM***********CKDKFLLQGVVASPGATAKDITPEMFNKEAGHHVEECKLRVLYV*******************************************************************SVIQINNKLQQELVRTYLCHSSFKRPFSPEVCMMSLWFRNQLSYTDICI*
****GEL*NIEPQELQFPFELRKQISCSLQLSNKTDNYVAFKVKTTNPKKYCVRPNTGVVLPRSTCDVIVTMQSQKEAPPDMQCKDKFLLQGVVASPGATAKDIT******E***HVEECKLRVLY**************************************************************************************************VCMMSLWFRNQLSYTDICIL
MMSTGELLNIEPQELQFPFELRKQISCSLQLSNKTDNYVAFKVKTTNPKKYCVRPNTGVVLPRSTCDVIVTMQSQKEAPPDMQCKDKFLLQGVVASPGATAKDITPEMFNKEAGHHVEECKLRVLYVAPPR**********************GNFSASEFSAAASRAFV***********ARALISKLTEEKNSVIQINNKLQQELVRTYLCHSSFKRPFSPEVCMMSLWFRNQLSYTDICIL
****GELLNIEPQELQFPFELRKQISCSLQLSNKTDNYVAFKVKTTNPKKYCVRPNTGVVLPRSTCDVIVTMQSQKEAPPDMQCKDKFLLQGVVASPGATAKDITPEMFNKEAGHHVEECKLRVLYVAPP*********************************************QDKSTEARALISKLTEEKNSVIQINNKLQQELVRTYLCHSSFKRPFSPEVCMMSLWFRNQLSYTDICIL
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MMSTGELLNIEPQELQFPFELRKQISCSLQLSNKTDNYVAFKVKTTNPKKYCVRPNTGVVLPRSTCDVIVTMQSQKEAPPDMQCKDKFLLQGVVASPGATAKDITPEMFNKEAGHHVEECKLRVLYVAPPRPPSPVHEGSEEGSSPRASVSDNGNFSASEFSAAASRAFVEQYEPQDKSTEARALxxxxxxxxxxxxxxxxxxxxxLVRTYLCHSSFKRPFSPEVCMMSLWFRNQLSYTDICIL
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query244 2.2.26 [Sep-21-2011]
Q8VZ95256 Vesicle-associated protei yes no 0.827 0.789 0.768 4e-87
Q9SHC8239 Vesicle-associated protei no no 0.823 0.841 0.764 3e-86
Q84WW5239 Vesicle-associated protei no no 0.823 0.841 0.637 2e-65
Q9SYC9 571 Vesicle-associated protei no no 0.651 0.278 0.654 3e-59
O82213149 Vesicle-associated protei no no 0.516 0.845 0.698 8e-47
B9DHD7 386 Vesicle-associated protei no no 0.627 0.396 0.532 3e-39
Q9LVU1220 Vesicle-associated protei no no 0.717 0.795 0.416 5e-39
Q10484319 Uncharacterized protein C yes no 0.454 0.347 0.362 2e-13
O60119 383 Vesicle-associated membra no no 0.483 0.308 0.379 4e-13
Q9Z269243 Vesicle-associated membra yes no 0.508 0.510 0.366 2e-12
>sp|Q8VZ95|VAP11_ARATH Vesicle-associated protein 1-1 OS=Arabidopsis thaliana GN=PVA11 PE=1 SV=1 Back     alignment and function desciption
 Score =  320 bits (821), Expect = 4e-87,   Method: Compositional matrix adjust.
 Identities = 159/207 (76%), Positives = 180/207 (86%), Gaps = 5/207 (2%)

Query: 2   MSTGELLNIEPQELQFPFELRKQISCSLQLSNKTDNYVAFKVKTTNPKKYCVRPNTGVVL 61
           MS  ELL +EP +LQFPFEL+KQISCSL L+NKTDN VAFKVKTTNPKKYCVRPNTGVVL
Sbjct: 17  MSNSELLTVEPLDLQFPFELKKQISCSLYLTNKTDNNVAFKVKTTNPKKYCVRPNTGVVL 76

Query: 62  PRSTCDVIVTMQSQKEAPPDMQCKDKFLLQGVVASPGATAKDITPEMFNKEAGHHVEECK 121
           PRSTC+V+VTMQ+QKEAP DMQCKDKFLLQGV+ASPG TAK++TPEMF+KEAGH VEE K
Sbjct: 77  PRSTCEVLVTMQAQKEAPSDMQCKDKFLLQGVIASPGVTAKEVTPEMFSKEAGHRVEETK 136

Query: 122 LRVLYVAPPRPPSPVHEGSEEGSSPRASVSDNGNFSASEFSAAASRAFVE-QYEPQDKST 180
           LRV YVAPPRPPSPVHEGSEEGSSPRASVSDNG+   SEFS    R  V+ +   Q+ ++
Sbjct: 137 LRVTYVAPPRPPSPVHEGSEEGSSPRASVSDNGH--GSEFS--FERFIVDNKAGHQENTS 192

Query: 181 EARALISKLTEEKNSVIQINNKLQQEL 207
           EARALI+KLTEEK S IQ+NN+LQ+EL
Sbjct: 193 EARALITKLTEEKQSAIQLNNRLQREL 219
May play a role in vesicle trafficking.
Arabidopsis thaliana (taxid: 3702)
>sp|Q9SHC8|VAP12_ARATH Vesicle-associated protein 1-2 OS=Arabidopsis thaliana GN=PVA12 PE=1 SV=1 Back     alignment and function description
>sp|Q84WW5|VAP13_ARATH Vesicle-associated protein 1-3 OS=Arabidopsis thaliana GN=PVA13 PE=2 SV=1 Back     alignment and function description
>sp|Q9SYC9|VAP14_ARATH Vesicle-associated protein 1-4 OS=Arabidopsis thaliana GN=PVA14 PE=2 SV=1 Back     alignment and function description
>sp|O82213|VAP31_ARATH Vesicle-associated protein 3-1 OS=Arabidopsis thaliana GN=PVA31 PE=3 SV=1 Back     alignment and function description
>sp|B9DHD7|VAP22_ARATH Vesicle-associated protein 2-2 OS=Arabidopsis thaliana GN=PVA22 PE=1 SV=1 Back     alignment and function description
>sp|Q9LVU1|VAP21_ARATH Vesicle-associated protein 2-1 OS=Arabidopsis thaliana GN=PVA21 PE=2 SV=1 Back     alignment and function description
>sp|Q10484|YDFC_SCHPO Uncharacterized protein C17C9.12 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=SPAC17C9.12 PE=1 SV=2 Back     alignment and function description
>sp|O60119|YH75_SCHPO Vesicle-associated membrane protein-associated protein C16G5.05c OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=SPBC16G5.05c PE=1 SV=1 Back     alignment and function description
>sp|Q9Z269|VAPB_RAT Vesicle-associated membrane protein-associated protein B OS=Rattus norvegicus GN=Vapb PE=1 SV=3 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query244
255541186241 vesicle-associated membrane protein, put 0.840 0.850 0.849 3e-96
356496332241 PREDICTED: vesicle-associated protein 1- 0.840 0.850 0.825 4e-94
357469911240 Vesicle-associated membrane protein-asso 0.836 0.85 0.796 5e-91
217074260227 unknown [Medicago truncatula] 0.836 0.898 0.796 7e-91
359489456239 PREDICTED: vesicle-associated protein 1- 0.827 0.845 0.844 1e-90
224136211241 predicted protein [Populus trichocarpa] 0.897 0.908 0.765 1e-89
224063699241 predicted protein [Populus trichocarpa] 0.840 0.850 0.815 1e-89
224074143241 predicted protein [Populus trichocarpa] 0.840 0.850 0.810 3e-87
388501352239 unknown [Lotus japonicus] 0.831 0.849 0.771 1e-86
351726060229 uncharacterized protein LOC100305725 [Gl 0.790 0.842 0.776 6e-86
>gi|255541186|ref|XP_002511657.1| vesicle-associated membrane protein, putative [Ricinus communis] gi|223548837|gb|EEF50326.1| vesicle-associated membrane protein, putative [Ricinus communis] Back     alignment and taxonomy information
 Score =  357 bits (916), Expect = 3e-96,   Method: Compositional matrix adjust.
 Identities = 175/206 (84%), Positives = 183/206 (88%), Gaps = 1/206 (0%)

Query: 2   MSTGELLNIEPQELQFPFELRKQISCSLQLSNKTDNYVAFKVKTTNPKKYCVRPNTGVVL 61
           MSTGELL IEPQELQFP ELRKQISCSLQL NK+DNYVAFKVKTTNPKKYCVRPNTGVVL
Sbjct: 1   MSTGELLTIEPQELQFPLELRKQISCSLQLLNKSDNYVAFKVKTTNPKKYCVRPNTGVVL 60

Query: 62  PRSTCDVIVTMQSQKEAPPDMQCKDKFLLQGVVASPGATAKDITPEMFNKEAGHHVEECK 121
           PRSTCDVIVTMQ+QKEAP DMQCKDKFLLQ V+ASPGATAKDI  EMFNKEAGH VEECK
Sbjct: 61  PRSTCDVIVTMQAQKEAPLDMQCKDKFLLQSVIASPGATAKDINAEMFNKEAGHQVEECK 120

Query: 122 LRVLYVAPPRPPSPVHEGSEEGSSPRASVSDNGNFSASEFSAAASRAFVEQYEPQDKSTE 181
           LRV+YVAPP PPSPV EGSEEGSSPRASVSDNGN SASE +    + F E++EPQD S E
Sbjct: 121 LRVVYVAPPGPPSPVREGSEEGSSPRASVSDNGNLSASERTVVL-KTFAERHEPQDNSIE 179

Query: 182 ARALISKLTEEKNSVIQINNKLQQEL 207
           ARALISKLTEEKNS IQ N KLQQEL
Sbjct: 180 ARALISKLTEEKNSAIQQNKKLQQEL 205

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|356496332|ref|XP_003517022.1| PREDICTED: vesicle-associated protein 1-2-like [Glycine max] Back     alignment and taxonomy information
>gi|357469911|ref|XP_003605240.1| Vesicle-associated membrane protein-associated protein A [Medicago truncatula] gi|158516790|gb|ABW70158.1| vesicle-associated protein [Medicago truncatula] gi|355506295|gb|AES87437.1| Vesicle-associated membrane protein-associated protein A [Medicago truncatula] gi|388503014|gb|AFK39573.1| unknown [Medicago truncatula] Back     alignment and taxonomy information
>gi|217074260|gb|ACJ85490.1| unknown [Medicago truncatula] Back     alignment and taxonomy information
>gi|359489456|ref|XP_002274894.2| PREDICTED: vesicle-associated protein 1-2-like [Vitis vinifera] gi|296089208|emb|CBI38911.3| unnamed protein product [Vitis vinifera] Back     alignment and taxonomy information
>gi|224136211|ref|XP_002326806.1| predicted protein [Populus trichocarpa] gi|222835121|gb|EEE73556.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
>gi|224063699|ref|XP_002301268.1| predicted protein [Populus trichocarpa] gi|222842994|gb|EEE80541.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
>gi|224074143|ref|XP_002304271.1| predicted protein [Populus trichocarpa] gi|222841703|gb|EEE79250.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
>gi|388501352|gb|AFK38742.1| unknown [Lotus japonicus] Back     alignment and taxonomy information
>gi|351726060|ref|NP_001235834.1| uncharacterized protein LOC100305725 [Glycine max] gi|255626431|gb|ACU13560.1| unknown [Glycine max] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query244
TAIR|locus:2101766256 VAP27-1 "VAMP/SYNAPTOBREVIN-AS 0.831 0.792 0.742 1.8e-78
TAIR|locus:2055557239 PVA12 "plant VAP homolog 12" [ 0.823 0.841 0.740 7.1e-77
TAIR|locus:2126921239 AT4G00170 [Arabidopsis thalian 0.823 0.841 0.599 4.5e-59
TAIR|locus:2008231 637 AT1G51270 [Arabidopsis thalian 0.614 0.235 0.7 1.3e-54
TAIR|locus:2061461149 AT2G23830 [Arabidopsis thalian 0.516 0.845 0.698 5e-44
TAIR|locus:2025585 386 VAP27-2 "vamp/synaptobrevin-as 0.536 0.339 0.586 6.6e-41
TAIR|locus:2171594220 AT5G47180 [Arabidopsis thalian 0.577 0.640 0.510 7.4e-40
UNIPROTKB|Q6P7K7242 vapb "Putative uncharacterized 0.508 0.512 0.381 3.4e-18
UNIPROTKB|G4N022285 MGG_06183 "Uncharacterized pro 0.553 0.473 0.350 1.1e-16
POMBASE|SPBC16G5.05c 383 SPBC16G5.05c "VAP family prote 0.696 0.443 0.320 4.4e-16
TAIR|locus:2101766 VAP27-1 "VAMP/SYNAPTOBREVIN-ASSOCIATED PROTEIN 27-1" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 789 (282.8 bits), Expect = 1.8e-78, P = 1.8e-78
 Identities = 153/206 (74%), Positives = 172/206 (83%)

Query:     2 MSTGELLNIEPQELQFPFELRKQISCSLQLSNKTDNYVAFKVKTTNPKKYCVRPNTGVVL 61
             MS  ELL +EP +LQFPFEL+KQISCSL L+NKTDN VAFKVKTTNPKKYCVRPNTGVVL
Sbjct:    17 MSNSELLTVEPLDLQFPFELKKQISCSLYLTNKTDNNVAFKVKTTNPKKYCVRPNTGVVL 76

Query:    62 PRSTCDVIVTMQSQKEAPPDMQCKDKFLLQGVVASPGATAKDITPEMFNKEAGHHVEECK 121
             PRSTC+V+VTMQ+QKEAP DMQCKDKFLLQGV+ASPG TAK++TPEMF+KEAGH VEE K
Sbjct:    77 PRSTCEVLVTMQAQKEAPSDMQCKDKFLLQGVIASPGVTAKEVTPEMFSKEAGHRVEETK 136

Query:   122 LRVLYVAPPRPPSPVHEGSEEGSSPRASVSDNGNXXXXXXXXXXXXXXVEQYEPQDKSTE 181
             LRV YVAPPRPPSPVHEGSEEGSSPRASVSDNG+                    Q+ ++E
Sbjct:   137 LRVTYVAPPRPPSPVHEGSEEGSSPRASVSDNGHGSEFSFERFIVDNKAGH---QENTSE 193

Query:   182 ARALISKLTEEKNSVIQINNKLQQEL 207
             ARALI+KLTEEK S IQ+NN+LQ+EL
Sbjct:   194 ARALITKLTEEKQSAIQLNNRLQREL 219
GO:0005198 "structural molecule activity" evidence=IEA
GO:0005634 "nucleus" evidence=ISM;IDA
GO:0005789 "endoplasmic reticulum membrane" evidence=IDA
GO:0046907 "intracellular transport" evidence=TAS
GO:0000326 "protein storage vacuole" evidence=IDA
GO:0005515 "protein binding" evidence=IPI
GO:0016021 "integral to membrane" evidence=IDA
GO:0005783 "endoplasmic reticulum" evidence=IDA
GO:0005886 "plasma membrane" evidence=IDA
GO:0005829 "cytosol" evidence=IDA
GO:0000911 "cytokinesis by cell plate formation" evidence=RCA
GO:0006499 "N-terminal protein myristoylation" evidence=RCA
GO:0006605 "protein targeting" evidence=RCA
GO:0006623 "protein targeting to vacuole" evidence=RCA
GO:0006886 "intracellular protein transport" evidence=RCA
GO:0007030 "Golgi organization" evidence=RCA
GO:0007033 "vacuole organization" evidence=RCA
GO:0010359 "regulation of anion channel activity" evidence=RCA
GO:0016192 "vesicle-mediated transport" evidence=RCA
TAIR|locus:2055557 PVA12 "plant VAP homolog 12" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2126921 AT4G00170 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2008231 AT1G51270 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2061461 AT2G23830 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2025585 VAP27-2 "vamp/synaptobrevin-associated protein 27-2" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2171594 AT5G47180 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
UNIPROTKB|Q6P7K7 vapb "Putative uncharacterized protein MGC76271" [Xenopus (Silurana) tropicalis (taxid:8364)] Back     alignment and assigned GO terms
UNIPROTKB|G4N022 MGG_06183 "Uncharacterized protein" [Magnaporthe oryzae 70-15 (taxid:242507)] Back     alignment and assigned GO terms
POMBASE|SPBC16G5.05c SPBC16G5.05c "VAP family protein (predicted)" [Schizosaccharomyces pombe (taxid:4896)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

ID ?Name ?Annotated EC number ?Identity ?Query coverage ?Hit coverage ?RBH(Q2H) ?RBH(H2Q) ?
Q9SHC8VAP12_ARATHNo assigned EC number0.76470.82370.8410nono
Q8VZ95VAP11_ARATHNo assigned EC number0.76810.82780.7890yesno

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

No EC number assignment, probably not an enzyme!

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Your Input:
GSVIVG00026421001
SubName- Full=Chromosome chr15 scaffold_37, whole genome shotgun sequence; (239 aa)
(Vitis vinifera)
Predicted Functional Partners:
 
Sorry, there are no predicted associations at the current settings.
 

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query244
pfam00635109 pfam00635, Motile_Sperm, MSP (Major sperm protein) 8e-34
COG5066242 COG5066, SCS2, VAMP-associated protein involved in 5e-19
>gnl|CDD|201362 pfam00635, Motile_Sperm, MSP (Major sperm protein) domain Back     alignment and domain information 
 Score =  117 bits (295), Expect = 8e-34
 Identities = 44/110 (40%), Positives = 62/110 (56%), Gaps = 3/110 (2%)

Query: 7   LLNIEPQE-LQFPFELRKQISCSLQLSNKTDNYVAFKVKTTNPKKYCVRPNTGVVLPRST 65
           LL I+P + L F     KQ + +L L+N +D  VAFKVKTTNPK+Y VRPN G++ P  +
Sbjct: 1   LLTIDPPDLLFFAAPGDKQGTSTLTLTNPSDKRVAFKVKTTNPKRYRVRPNYGILKPGES 60

Query: 66  CDVIVTMQSQKEAPPDMQCKDKFLLQGVVASPGAT-AKDITPEMFNKEAG 114
             + +T Q   + P D + KDKF++Q   A   A  AK+     +   A 
Sbjct: 61  VTITITRQPFDKEPGDPK-KDKFVIQYTEAPDDAKDAKEAFKRAWKNGAP 109

Major sperm proteins are involved in sperm motility. These proteins oligomerise to form filaments. This family contains many other proteins. Length = 109
>gnl|CDD|227398 COG5066, SCS2, VAMP-associated protein involved in inositol metabolism [Intracellular trafficking and secretion] Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 244
KOG0439218 consensus VAMP-associated protein involved in inos 99.96
COG5066242 SCS2 VAMP-associated protein involved in inositol 99.95
PF00635109 Motile_Sperm: MSP (Major sperm protein) domain; In 99.89
PF14874102 PapD-like: Flagellar-associated PapD-like 98.54
PF00345122 PapD_N: Pili and flagellar-assembly chaperone, Pap 96.84
PRK09918230 putative fimbrial chaperone protein; Provisional 92.43
PF14646426 MYCBPAP: MYCBP-associated protein family 92.37
PRK09926246 putative chaperone protein EcpD; Provisional 91.44
PF0218345 HALZ: Homeobox associated leucine zipper; InterPro 91.3
PRK15249253 fimbrial chaperone protein StbB; Provisional 91.0
PF11614118 FixG_C: IG-like fold at C-terminal of FixG, putati 90.51
PF06156107 DUF972: Protein of unknown function (DUF972); Inte 90.31
PRK11385236 putativi pili assembly chaperone; Provisional 90.25
PRK15299227 fimbrial chaperone protein StiB; Provisional 90.2
PF0761045 DUF1573: Protein of unknown function (DUF1573); In 90.02
PRK15211229 fimbrial chaperone protein PefD; Provisional 89.31
PRK15246233 fimbrial assembly chaperone StbE; Provisional 88.72
PRK15290243 lfpB fimbrial chaperone protein; Provisional 87.25
PRK15295226 fimbrial assembly chaperone SthB; Provisional 87.22
PRK13169110 DNA replication intiation control protein YabA; Re 87.07
smart0034044 HALZ homeobox associated leucin zipper. 87.03
PF0234432 Myc-LZ: Myc leucine zipper domain; InterPro: IPR00 86.54
PF0497780 DivIC: Septum formation initiator; InterPro: IPR00 85.95
PRK15192234 fimbrial chaperone BcfG; Provisional 85.08
PF0600572 DUF904: Protein of unknown function (DUF904); Inte 84.84
PRK00888105 ftsB cell division protein FtsB; Reviewed 84.49
KOG4343 655 consensus bZIP transcription factor ATF6 [Transcri 84.08
PF0537755 FlaC_arch: Flagella accessory protein C (FlaC); In 84.06
PRK15208228 long polar fimbrial chaperone LpfB; Provisional 83.73
PRK1542279 septal ring assembly protein ZapB; Provisional 82.39
PF10482120 CtIP_N: Tumour-suppressor protein CtIP N-terminal 82.26
PF06280112 DUF1034: Fn3-like domain (DUF1034); InterPro: IPR0 81.93
COG4467114 Regulator of replication initiation timing [Replic 81.74
PRK15188228 fimbrial chaperone protein BcfB; Provisional 81.29
>KOG0439 consensus VAMP-associated protein involved in inositol metabolism [Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information 
Probab=99.96  E-value=2.4e-28  Score=212.50  Aligned_cols=137  Identities=47%  Similarity=0.741  Sum_probs=122.2

Q ss_pred             CCCCCcceEEeC-CeeeeeccCCCeeEEEEEEEcCCCCeEEEEeeecCCCcEEEeCCCeeeCCCCeEEEEEEeccCCCCC
Q 026049            1 MMSTGELLNIEP-QELQFPFELRKQISCSLQLSNKTDNYVAFKVKTTNPKKYCVRPNTGVVLPRSTCDVIVTMQSQKEAP   79 (244)
Q Consensus         1 mm~~~~lL~I~P-~eL~F~~~~~~~~~~~L~L~N~s~~~VAFKVKTT~P~~Y~VrP~~GiI~P~~s~~V~Itlq~~~e~p   79 (244)
                      |++.+.+|.|+| .+|.|++++++++.+.|+|+|+++.++|||||||+|++||||||.|+|.||++++|.|.+|+....|
T Consensus         2 ~~~~~~~l~i~P~~~l~F~~~~~~~~~~~l~l~N~t~~~vaFKvktT~p~~y~VrP~~G~i~p~~t~~i~v~~q~~~~~P   81 (218)
T KOG0439|consen    2 MLETESLLEIEPSDELVFPLPLNEQVKCSLTLKNPTKLRVAFKVKTTAPKLYCVRPNGGVIDPGSTVEIEVTHQPFEKSP   81 (218)
T ss_pred             CccccCccccCCCceEEeccCCCceEEEEEEEecCCCCceEEEEEcCCCCeEEEcCCcceECCCCcEEEEEEeccCccCc
Confidence            667789999999 5999999999999999999999999999999999999999999999999999999999999987789


Q ss_pred             CCCCCCceEEEEEEEcCCCCCcCCcchhhhcccC--CCcceEEEeEEEEeCCCCCCCCCCCC
Q 026049           80 PDMQCKDKFLLQGVVASPGATAKDITPEMFNKEA--GHHVEECKLRVLYVAPPRPPSPVHEG  139 (244)
Q Consensus        80 ~d~~~kDKFlVqs~~v~~~~~~~di~~~~f~k~~--~~~i~e~KLrv~f~~p~~~~s~~~~~  139 (244)
                      .|++|+|||+||++.++.+ +..++ .++|....  +..+.+.+++|.|..|+.+++....+
T Consensus        82 ~d~~~r~kF~v~~~~~~~~-~~~~~-~~~~~~~k~~~~~~~~~k~~~~~~~~~~~~~~~~~~  141 (218)
T KOG0439|consen   82 PDFKSRHKFLIQSLKAPPP-TTRDV-VDLWKFQKETPKESFETKLRVVFVAPTETDSVVAKL  141 (218)
T ss_pred             hhhcccceEEEEEEecCCc-cccch-hhhccccccccccccceeeEEEeeCCCCCccccccc
Confidence            9999999999999999987 33344 47777665  78899999999999988877665444

>COG5066 SCS2 VAMP-associated protein involved in inositol metabolism [Intracellular trafficking and secretion] Back     alignment and domain information
>PF00635 Motile_Sperm: MSP (Major sperm protein) domain; InterPro: IPR000535 Major sperm proteins (MSP) are central components in molecular interactions underlying sperm motility in Caenorhabditis elegans, whose sperm employ an amoebae-like crawling motion using a MSP-containing lamellipod, rather than the flagellar-based swimming motion associated with other sperm Back     alignment and domain information
>PF14874 PapD-like: Flagellar-associated PapD-like Back     alignment and domain information
>PF00345 PapD_N: Pili and flagellar-assembly chaperone, PapD N-terminal domain; InterPro: IPR016147 Most Gram-negative bacteria possess a supramolecular structure - the pili - on their surface, which mediates attachment to specific receptors Back     alignment and domain information
>PRK09918 putative fimbrial chaperone protein; Provisional Back     alignment and domain information
>PF14646 MYCBPAP: MYCBP-associated protein family Back     alignment and domain information
>PRK09926 putative chaperone protein EcpD; Provisional Back     alignment and domain information
>PF02183 HALZ: Homeobox associated leucine zipper; InterPro: IPR003106 This region is a plant specific leucine zipper that is always found associated with a homeobox [] Back     alignment and domain information
>PRK15249 fimbrial chaperone protein StbB; Provisional Back     alignment and domain information
>PF11614 FixG_C: IG-like fold at C-terminal of FixG, putative oxidoreductase; PDB: 2R39_A Back     alignment and domain information
>PF06156 DUF972: Protein of unknown function (DUF972); InterPro: IPR010377 FUNCTION: Involved in initiation control of chromosome replication Back     alignment and domain information
>PRK11385 putativi pili assembly chaperone; Provisional Back     alignment and domain information
>PRK15299 fimbrial chaperone protein StiB; Provisional Back     alignment and domain information
>PF07610 DUF1573: Protein of unknown function (DUF1573); InterPro: IPR011467 These hypothetical proteins from bacteria, such as Rhodopirellula baltica, Bacteroides thetaiotaomicron and Porphyromonas gingivalis, share a region of conserved sequence towards their N termini Back     alignment and domain information
>PRK15211 fimbrial chaperone protein PefD; Provisional Back     alignment and domain information
>PRK15246 fimbrial assembly chaperone StbE; Provisional Back     alignment and domain information
>PRK15290 lfpB fimbrial chaperone protein; Provisional Back     alignment and domain information
>PRK15295 fimbrial assembly chaperone SthB; Provisional Back     alignment and domain information
>PRK13169 DNA replication intiation control protein YabA; Reviewed Back     alignment and domain information
>smart00340 HALZ homeobox associated leucin zipper Back     alignment and domain information
>PF02344 Myc-LZ: Myc leucine zipper domain; InterPro: IPR003327 This family consists of the leucine zipper dimerisation domain found in both cellular c-Myc proto-oncogenes and viral v-Myc oncogenes Back     alignment and domain information
>PF04977 DivIC: Septum formation initiator; InterPro: IPR007060 DivIC, from the spore-forming, Gram-positive bacterium Bacillus subtilis, is necessary for both vegetative and sporulation septum formation [] Back     alignment and domain information
>PRK15192 fimbrial chaperone BcfG; Provisional Back     alignment and domain information
>PF06005 DUF904: Protein of unknown function (DUF904); InterPro: IPR009252 Cell division protein ZapB is a non-essential, abundant cell division factor that is required for proper Z-ring formation Back     alignment and domain information
>PRK00888 ftsB cell division protein FtsB; Reviewed Back     alignment and domain information
>KOG4343 consensus bZIP transcription factor ATF6 [Transcription] Back     alignment and domain information
>PF05377 FlaC_arch: Flagella accessory protein C (FlaC); InterPro: IPR008039 Although archaeal flagella appear superficially similar to those of bacteria, they are quite distinct [] Back     alignment and domain information
>PRK15208 long polar fimbrial chaperone LpfB; Provisional Back     alignment and domain information
>PRK15422 septal ring assembly protein ZapB; Provisional Back     alignment and domain information
>PF10482 CtIP_N: Tumour-suppressor protein CtIP N-terminal domain; InterPro: IPR019518 CtIP is predominantly a nuclear protein that complexes with both BRCA1 and the BRCA1-associated RING domain protein (BARD1) Back     alignment and domain information
>PF06280 DUF1034: Fn3-like domain (DUF1034); InterPro: IPR010435 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families Back     alignment and domain information
>COG4467 Regulator of replication initiation timing [Replication, recombination, and repair] Back     alignment and domain information
>PRK15188 fimbrial chaperone protein BcfB; Provisional Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query244
2rr3_A130 Solution Structure Of The Complex Between Human Vap 6e-13
2cri_A147 Solution Structure Of The Msp Domain Of Mouse Vamp- 2e-12
3ikk_A127 Crystal Structure Analysis Of Msp Domain Length = 1 2e-12
1z9o_A128 1.9 Angstrom Crystal Structure Of The Rat Vap-a Msp 4e-12
1z9l_A128 1.7 Angstrom Crystal Structure Of The Rat Vap-A Msp 6e-12
1wic_A152 Solution Structure Of The Msp Domain Of Riken Cdna 8e-07
>pdb|2RR3|A Chain A, Solution Structure Of The Complex Between Human Vap-A Msp Domain And Human Osbp Ffat Motif Length = 130 Back     alignment and structure 
Iteration: 1

 Score = 70.9 bits (172), Expect = 6e-13,   Method: Compositional matrix adjust.
 Identities = 43/119 (36%), Positives = 67/119 (56%), Gaps = 6/119 (5%)
Query: 12  PQELQFPFELRKQISCSLQLSNKTDNYVAFKVKTTNPKKYCVRPNTGVVLPRSTCDVIVT 71
           P +L+F       ++ +L+L N +D  V FKVKTT P++YCVRPN+G++ P ST  V V 
Sbjct: 15  PTDLKFKGPFTDVVTTNLKLRNPSDRKVCFKVKTTAPRRYCVRPNSGIIDPGSTVTVSVM 74
Query: 72  MQSQKEAPPDMQCKDKFLLQGVVASPGATAKDITPEMFNKEAG-HHVEECKLRVLYVAP 129
           +Q   +  P+ + K KF++Q + A P  +      E   KEA    + + KLR ++  P
Sbjct: 75  LQPF-DYDPNEKSKHKFMVQTIFAPPNTSDM----EAVWKEAKPDELMDSKLRCVFEMP 128
>pdb|2CRI|A Chain A, Solution Structure Of The Msp Domain Of Mouse Vamp- Associated Proteina Length = 147 Back     alignment and structure
>pdb|3IKK|A Chain A, Crystal Structure Analysis Of Msp Domain Length = 127 Back     alignment and structure
>pdb|1Z9O|A Chain A, 1.9 Angstrom Crystal Structure Of The Rat Vap-a Msp Homology Domain In Complex With The Rat Orp1 Ffat Motif Length = 128 Back     alignment and structure
>pdb|1Z9L|A Chain A, 1.7 Angstrom Crystal Structure Of The Rat Vap-A Msp Homology Domain Length = 128 Back     alignment and structure
>pdb|1WIC|A Chain A, Solution Structure Of The Msp Domain Of Riken Cdna 6030424e15 Length = 152 Back     alignment and structure

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query244
1wic_A152 Hypothetical protein riken cDNA 6030424E15; beta s 3e-44
2cri_A147 Vesicle-associated membrane protein-associated pro 2e-36
1msp_A126 MSP, major sperm protein; cytoskeletal protein, ce 1e-35
1z9l_A128 Vesicle-associated membrane protein-associated pro 9e-34
1m1s_A116 WR4; structural genomics, major sperm protein, bio 2e-30
1row_A109 SSP-19, MSP-domain protein like family member; bet 2e-26
>1wic_A Hypothetical protein riken cDNA 6030424E15; beta sandwich fold, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: b.1.11.2 Length = 152 Back     alignment and structure
 Score =  145 bits (366), Expect = 3e-44
 Identities = 43/144 (29%), Positives = 65/144 (45%), Gaps = 6/144 (4%)

Query: 2   MSTGELLNIEPQ-ELQFPFELRKQISCSLQLSNKTDNYVAFKVKTTNPKKYCVRPNTGVV 60
           +  G LL+I P  EL F      +    + L+N T N VAFKV+TT P+KY V+P+    
Sbjct: 13  VFKGPLLHISPAEELYFGSIESGEKKTLIVLTNVTKNIVAFKVRTTAPEKYRVKPSNSSC 72

Query: 61  LPRSTCDVIVTMQSQKEAPPDMQCKDKFLLQGVVASPGATAKDITPEMFNKEA-GHHVEE 119
            P ++ D+IV+          +  +D+FL+        +         F KE   + V E
Sbjct: 73  DPGASIDIIVSPH----GGLTVSAQDRFLIMAAEMEQSSGTGPAELSQFWKEVPRNKVME 128

Query: 120 CKLRVLYVAPPRPPSPVHEGSEEG 143
            +LR   V   +P S +  G   G
Sbjct: 129 HRLRCHTVESSKPNSLMLSGPSSG 152
>2cri_A Vesicle-associated membrane protein-associated protein A; VAP-A, VAP-33, beta sandwitch fold, structural genomics, NPPSFA; NMR {Mus musculus} Length = 147 Back     alignment and structure
>1msp_A MSP, major sperm protein; cytoskeletal protein, cell motility protein; 2.50A {Ascaris suum} SCOP: b.1.11.2 PDB: 3msp_A 2bvu_A 2msp_A 1grw_A Length = 126 Back     alignment and structure
>1z9l_A Vesicle-associated membrane protein-associated protein A; VAP-A, cytoplasmic domain, protein binding; HET: MSE; 1.70A {Rattus norvegicus} PDB: 1z9o_A 2rr3_A 3ikk_A Length = 128 Back     alignment and structure
>1m1s_A WR4; structural genomics, major sperm protein, bioinformatics, PSI, protein structure initiative; 1.80A {Caenorhabditis elegans} SCOP: b.1.11.2 Length = 116 Back     alignment and structure
>1row_A SSP-19, MSP-domain protein like family member; beta barrel, structural genomics, PSI, protein structure initiative; 2.00A {Caenorhabditis elegans} SCOP: b.1.11.2 Length = 109 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query244
1wic_A152 Hypothetical protein riken cDNA 6030424E15; beta s 100.0
2cri_A147 Vesicle-associated membrane protein-associated pro 100.0
1z9l_A128 Vesicle-associated membrane protein-associated pro 100.0
1msp_A126 MSP, major sperm protein; cytoskeletal protein, ce 100.0
1row_A109 SSP-19, MSP-domain protein like family member; bet 99.96
1m1s_A116 WR4; structural genomics, major sperm protein, bio 99.95
2ys4_A122 Hydrocephalus-inducing protein homolog; hydin, PAP 98.28
2e6j_A112 Hydin protein; PAPD, structural genomics, NPPSFA, 97.97
3qbt_B140 Inositol polyphosphate 5-phosphatase OCRL-1; prote 97.95
3qis_A366 Inositol polyphosphate 5-phosphatase OCRL-1; DENT 97.45
2qsv_A220 Uncharacterized protein; MCSG, structural genomics 96.26
2qsv_A220 Uncharacterized protein; MCSG, structural genomics 95.26
3q48_A257 Chaperone CUPB2; IG fold, periplasmic chaperone; 2 92.04
1nkp_B83 MAX protein, MYC proto-oncogene protein; transcrip 89.23
2co7_B221 SAFB chaperone, putative fimbriae assembly chapero 89.14
1nlw_A80 MAD protein, MAX dimerizer; transcription factor, 89.02
2xg5_A218 PAPD, chaperone protein PAPD; chaperone, chaperone 88.57
1klf_A205 FIMC chaperone, chaperone protein FIMC; adhesin-ch 87.29
1yew_A382 Particulate methane monooxygenase, B subunit; memb 86.46
4djm_A239 DRAB; chaperone, PILI; 2.52A {Escherichia coli} 86.33
3m48_A33 General control protein GCN4; leucine zipper, synt 86.33
2oxj_A34 Hybrid alpha/beta peptide based on the GCN4-P1 Se 85.55
3c3g_A33 Alpha/beta peptide with the GCN4-PLI SIDE chain S 85.43
1hjb_A87 Ccaat/enhancer binding protein beta; transcription 85.23
1t2k_D61 Cyclic-AMP-dependent transcription factor ATF-2; p 84.92
4ay0_A218 Chaperone protein CAF1M; amino acid motifs, bacter 84.75
1l4i_A206 SFAE protein; periplasmic chaperone, immunoglobuli 84.44
1uo4_A34 General control protein GCN4; four helix bundle, c 84.27
1dh3_A55 Transcription factor CREB; protein-DNA complex, tr 84.19
1am9_A82 Srebp-1A, protein (sterol regulatory element bindi 83.1
1ci6_A63 Transcription factor ATF-4; BZIP; 2.60A {Homo sapi 82.94
1jnm_A62 Proto-oncogene C-JUN; BZIP, protein-DNA complex, t 82.89
1gu4_A78 CAAT/enhancer binding protein beta; transcription/ 82.66
3c3f_A34 Alpha/beta peptide with the GCN4-PLI SIDE chain S 82.66
2bni_A34 General control protein GCN4; four helix bundle, a 82.3
2akf_A32 Coronin-1A; coiled coil, protein binding; 1.20A {S 82.15
2r39_A118 FIXG-related protein; structural GE PSI-2, protein 81.82
1nkp_A88 C-MYC, MYC proto-oncogene protein; transcription, 81.54
2wuj_A57 Septum site-determining protein diviva; bacterial 81.08
2dgc_A63 Protein (GCN4); basic domain, leucine zipper, DNA 80.74
1nkp_A88 C-MYC, MYC proto-oncogene protein; transcription, 80.65
3gfu_C224 Chaperone protein FAEE; immunoglobulin like fold, 80.58
2jee_A81 YIIU; FTSZ, septum, coiled-coil, cell division, ce 80.57
>1wic_A Hypothetical protein riken cDNA 6030424E15; beta sandwich fold, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: b.1.11.2 Back     alignment and structure
Probab=100.00  E-value=3.1e-38  Score=261.62  Aligned_cols=135  Identities=30%  Similarity=0.492  Sum_probs=124.3

Q ss_pred             CCcceEEeCC-eeeeeccCCCeeEEEEEEEcCCCCeEEEEeeecCCCcEEEeCCCeeeCCCCeEEEEEEeccCCCCCCCC
Q 026049            4 TGELLNIEPQ-ELQFPFELRKQISCSLQLSNKTDNYVAFKVKTTNPKKYCVRPNTGVVLPRSTCDVIVTMQSQKEAPPDM   82 (244)
Q Consensus         4 ~~~lL~I~P~-eL~F~~~~~~~~~~~L~L~N~s~~~VAFKVKTT~P~~Y~VrP~~GiI~P~~s~~V~Itlq~~~e~p~d~   82 (244)
                      ++++|.|+|. +|.|.+++++++++.|+|+|+++++||||||||+|++|||||+.|+|.||++++|.|+||++.+    .
T Consensus        15 ~~~~L~i~P~~~L~F~~~~~~~~~~~l~L~N~s~~~VaFKVKTT~p~~y~VrP~~GiI~P~~s~~V~V~lq~~~~----~   90 (152)
T 1wic_A           15 KGPLLHISPAEELYFGSIESGEKKTLIVLTNVTKNIVAFKVRTTAPEKYRVKPSNSSCDPGASIDIIVSPHGGLT----V   90 (152)
T ss_dssp             CCSSBCBBSSSCBCCCCSSSSCCCEEEEEEBCSSSCEEEEEEESCTTTEEEESSEEEECTTCEEEEEEEECSSSC----C
T ss_pred             CCCeEEECCCCeEEEeCCCCceEEEEEEEEcCCCCeEEEEEECCCCCceeecCCCcEECCCCeEEEEEEecCccc----C
Confidence            4689999998 9999999999999999999999999999999999999999999999999999999999999853    2


Q ss_pred             CCCceEEEEEEEcC--CCCCcCCcchhhhcccCCCcceEEEeEEEEeCCCCCCCCCCCCCCCC
Q 026049           83 QCKDKFLLQGVVAS--PGATAKDITPEMFNKEAGHHVEECKLRVLYVAPPRPPSPVHEGSEEG  143 (244)
Q Consensus        83 ~~kDKFlVqs~~v~--~~~~~~di~~~~f~k~~~~~i~e~KLrv~f~~p~~~~s~~~~~~~~~  143 (244)
                      +|+|||+||++.++  ++.+.+|+. ++|++..+..++++||||+|+.+++|+|++.+|.++|
T Consensus        91 ~~kDKFlVqs~~v~~~~~~~~~d~~-~~wk~~~~~~i~e~kLrv~f~~~~~p~s~~~~g~~~~  152 (152)
T 1wic_A           91 SAQDRFLIMAAEMEQSSGTGPAELS-QFWKEVPRNKVMEHRLRCHTVESSKPNSLMLSGPSSG  152 (152)
T ss_dssp             CSSCCEEEEEEECCSSCCCSHHHHH-HHHHHSCTTTCEEEEECBCCCCSCSSSSSCCCCCSCC
T ss_pred             CCCCEEEEEEEEcCCcCCCChhhHH-HHHhccCCCceEEEEEEEEECCCCCCCCccccCCCCC
Confidence            79999999999999  566666775 8999988889999999999999999999999998765
>2cri_A Vesicle-associated membrane protein-associated protein A; VAP-A, VAP-33, beta sandwitch fold, structural genomics, NPPSFA; NMR {Mus musculus} Back     alignment and structure
>1z9l_A Vesicle-associated membrane protein-associated protein A; VAP-A, cytoplasmic domain, protein binding; HET: MSE; 1.70A {Rattus norvegicus} PDB: 1z9o_A 2rr3_A 3ikk_A Back     alignment and structure
>1msp_A MSP, major sperm protein; cytoskeletal protein, cell motility protein; 2.50A {Ascaris suum} SCOP: b.1.11.2 PDB: 3msp_A 2bvu_A 2msp_A 1grw_A Back     alignment and structure
>1row_A SSP-19, MSP-domain protein like family member; beta barrel, structural genomics, PSI, protein structure initiative; 2.00A {Caenorhabditis elegans} SCOP: b.1.11.2 Back     alignment and structure
>1m1s_A WR4; structural genomics, major sperm protein, bioinformatics, PSI, protein structure initiative; 1.80A {Caenorhabditis elegans} SCOP: b.1.11.2 Back     alignment and structure
>2ys4_A Hydrocephalus-inducing protein homolog; hydin, PAPD-like, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Back     alignment and structure
>2e6j_A Hydin protein; PAPD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Back     alignment and structure
>3qbt_B Inositol polyphosphate 5-phosphatase OCRL-1; protein transport, vesicular trafficking, GTPase, LOWE syndr immunoglobulin fold, RAB8A, endocytosis; HET: GNP; 2.00A {Homo sapiens} Back     alignment and structure
>3qis_A Inositol polyphosphate 5-phosphatase OCRL-1; DENT disease, RAC1, RAB gtpases, APPL1, endocytic PATH golgi complex, hydrolase-protein binding complex; 2.30A {Homo sapiens} PDB: 2qv2_A Back     alignment and structure
>2qsv_A Uncharacterized protein; MCSG, structural genomics, porphyromonas gingivalis W83, PSI protein structure initiative; 2.10A {Porphyromonas gingivalis} Back     alignment and structure
>2qsv_A Uncharacterized protein; MCSG, structural genomics, porphyromonas gingivalis W83, PSI protein structure initiative; 2.10A {Porphyromonas gingivalis} Back     alignment and structure
>3q48_A Chaperone CUPB2; IG fold, periplasmic chaperone; 2.50A {Pseudomonas aeruginosa} Back     alignment and structure
>1nkp_B MAX protein, MYC proto-oncogene protein; transcription, DNA, BHLHZ, heterodimer, transcription/DNA complex; 1.80A {Homo sapiens} SCOP: a.38.1.1 PDB: 1an2_A* 1r05_A 1nlw_B Back     alignment and structure
>2co7_B SAFB chaperone, putative fimbriae assembly chaperone; pilus subunit, adhesion, strand complementation, pathogenesis, fibril protein; 1.8A {Salmonella typhimurium} SCOP: b.1.11.1 b.7.2.1 PDB: 2co6_B Back     alignment and structure
>1nlw_A MAD protein, MAX dimerizer; transcription factor, DNA, BHLHZ, transcription/DNA complex; 2.00A {Homo sapiens} SCOP: a.38.1.1 Back     alignment and structure
>2xg5_A PAPD, chaperone protein PAPD; chaperone, chaperone-surface active protein complex; HET: EC2 EC5; 2.00A {Escherichia coli} PDB: 1pdk_A 2uy6_A 2uy7_A 2j2z_A 2xg4_A* 2w07_A* 3me0_A* 1n0l_A 2wmp_A 3dpa_A 2j7l_A 1qpp_A 1qpx_A Back     alignment and structure
>1klf_A FIMC chaperone, chaperone protein FIMC; adhesin-chaperone complex, mannose-bound, chaperone/adhesin complex complex; HET: MAN; 2.79A {Escherichia coli} SCOP: b.1.11.1 b.7.2.1 PDB: 1kiu_A* 3rfz_C 1qun_A 1bf8_A 1ze3_C 3bwu_C 3jwn_C Back     alignment and structure
>1yew_A Particulate methane monooxygenase, B subunit; membrane protein, beta barrel, oxidoreductase; 2.80A {Methylococcus capsulatus} PDB: 3rgb_A Back     alignment and structure
>4djm_A DRAB; chaperone, PILI; 2.52A {Escherichia coli} Back     alignment and structure
>3m48_A General control protein GCN4; leucine zipper, synthetic peptide, alpha helix, activa amino-acid biosynthesis, DNA-binding, nucleus; 1.45A {Synthetic} PDB: 3i1g_A 2ahp_A* 2o7h_A Back     alignment and structure
>2oxj_A Hybrid alpha/beta peptide based on the GCN4-P1 Se heptad positions B and F substituted...; helix bundle, foldamer, unknown function; HET: B3K B3D B3E B3S B3Y B3X B3A BAL; 2.00A {Synthetic} PDB: 2oxk_A* Back     alignment and structure
>3c3g_A Alpha/beta peptide with the GCN4-PLI SIDE chain S AN (alpha-alpha-beta) backbone; helix bundle, foldamer, unknown function protein; HET: HMR B3Q B3D B3E B3L BIL B3K BAL GOL; 1.80A {Synthetic} PDB: 3heu_A* 3het_A* 3hev_A* 3hew_A* 3hey_A* 3hex_A* 3c3h_A* Back     alignment and structure
>1hjb_A Ccaat/enhancer binding protein beta; transcription/DNA, protein-DNA complex; HET: DNA; 3.0A {Homo sapiens} SCOP: h.1.3.1 Back     alignment and structure
>1t2k_D Cyclic-AMP-dependent transcription factor ATF-2; protein DNA complex, transcription/DNA complex; 3.00A {Homo sapiens} SCOP: h.1.3.1 Back     alignment and structure
>4ay0_A Chaperone protein CAF1M; amino acid motifs, bacterial capsules, bacterial proteins, gene expression regulation, molecular chaperones, binding; 1.52A {Yersinia pestis} PDB: 1p5v_A 1p5u_A 1z9s_A 2os7_A 3dos_A 3dpb_A 3dsn_A 4b0m_M 4az8_A 4ayf_A Back     alignment and structure
>1l4i_A SFAE protein; periplasmic chaperone, immunoglobulin fold; 2.20A {Escherichia coli} SCOP: b.1.11.1 b.7.2.1 Back     alignment and structure
>1uo4_A General control protein GCN4; four helix bundle, cavity, iodobenzene; 1.70A {Saccharomyces cerevisiae} SCOP: h.1.3.1 PDB: 1uo3_A 1unt_A 1uo5_A 1unu_A 1unv_A 1uo1_A 2ccf_A 2cce_A 1unx_A 1unw_A 1w5j_A* 1w5k_A* 1u9f_A* 3f86_A* 3f87_A* 3hez_A* 3c3f_A* Back     alignment and structure
>1dh3_A Transcription factor CREB; protein-DNA complex, transcription/DNA complex; HET: DNA; 3.00A {Mus musculus} SCOP: h.1.3.1 Back     alignment and structure
>1am9_A Srebp-1A, protein (sterol regulatory element binding protein 1A); basic-helix-loop- helix-leucine zipper, transcription factor; HET: DNA; 2.30A {Homo sapiens} SCOP: a.38.1.1 PDB: 1ukl_C Back     alignment and structure
>1ci6_A Transcription factor ATF-4; BZIP; 2.60A {Homo sapiens} SCOP: h.1.3.1 Back     alignment and structure
>1jnm_A Proto-oncogene C-JUN; BZIP, protein-DNA complex, transcription/DNA complex; 2.20A {Homo sapiens} SCOP: h.1.3.1 PDB: 1fos_F 2h7h_A 1t2k_C 1a02_J* 1s9k_E 1jun_A Back     alignment and structure
>1gu4_A CAAT/enhancer binding protein beta; transcription/DNA, protein-DNA complex, transcription factor, BZIP, C/EBP; 1.80A {Homo sapiens} SCOP: h.1.3.1 PDB: 1gtw_A 1gu5_A 1h88_A 1h8a_A 1io4_A 2e43_A* 2e42_A* 1h89_A 1ci6_B 1nwq_A Back     alignment and structure
>3c3f_A Alpha/beta peptide with the GCN4-PLI SIDE chain S AN (alpha-alpha-alpha-beta) backbone...; helix bundle, foldamer, unknown function, de novo protein; HET: B3K B3D B3E BIL B3L BAL; 2.00A {Synthetic} SCOP: h.1.3.1 Back     alignment and structure
>2bni_A General control protein GCN4; four helix bundle, antiparallel four helix bundle acyl transferase; HET: TYZ; 1.5A {Saccharomyces cerevisiae} SCOP: h.1.3.1 PDB: 2ccn_A 1w5k_A* 2ccf_A 2cce_A 1w5j_A* 1uo2_A 1gcl_A 1uo1_A 1unv_A 1uo0_A 1unt_A 1uo5_A 1unz_A 1unx_A 1unu_A 1unw_A 1uo4_A 1uo3_A 1uny_A 1u9f_A* ... Back     alignment and structure
>2akf_A Coronin-1A; coiled coil, protein binding; 1.20A {Synthetic} Back     alignment and structure
>2r39_A FIXG-related protein; structural GE PSI-2, protein structure initiative, midwest center for STR genomics, MCSG, iron, iron-sulfur; 2.02A {Vibrio parahaemolyticus} Back     alignment and structure
>1nkp_A C-MYC, MYC proto-oncogene protein; transcription, DNA, BHLHZ, heterodimer, transcription/DNA complex; 1.80A {Homo sapiens} SCOP: a.38.1.1 Back     alignment and structure
>2wuj_A Septum site-determining protein diviva; bacterial cell division, septation, cell cycle, sporulation; 1.40A {Bacillus subtilis} PDB: 2wuk_A Back     alignment and structure
>2dgc_A Protein (GCN4); basic domain, leucine zipper, DNA binding, eukaryotic regulatory protein, transcription/DNA complex; HET: DNA; 2.20A {Saccharomyces cerevisiae} SCOP: h.1.3.1 PDB: 1dgc_A* 1ld4_E 1ysa_C* 3p8m_D Back     alignment and structure
>1nkp_A C-MYC, MYC proto-oncogene protein; transcription, DNA, BHLHZ, heterodimer, transcription/DNA complex; 1.80A {Homo sapiens} SCOP: a.38.1.1 Back     alignment and structure
>3gfu_C Chaperone protein FAEE; immunoglobulin like fold, chaperone, fimbrium, immunoglobulin domain, periplasm, plasmid, cell adhesion; 1.99A {Escherichia coli} PDB: 3gew_B 3f65_A 3f6i_A 3f6l_A Back     alignment and structure
>2jee_A YIIU; FTSZ, septum, coiled-coil, cell division, cell cycle, hypothetical protein; 2.8A {Escherichia coli} Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 244
d1wica_152 b.1.11.2 (A:) MSP domain containing protein 2, Mos 5e-47
d1grwa_124 b.1.11.2 (A:) Major sperm protein, MSP {Nematode ( 3e-36
d1rowa_107 b.1.11.2 (A:) SSP-19 {Nematode (Caenorhabditis ele 2e-28
d1m1sa_109 b.1.11.2 (A:) WR4 {Nematode (Caenorhabditis elegan 4e-27
>d1wica_ b.1.11.2 (A:) MSP domain containing protein 2, Mospd2 {Mouse (Mus musculus) [TaxId: 10090]} Length = 152 Back     information, alignment and structure

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: PapD-like
family: MSP-like
domain: MSP domain containing protein 2, Mospd2
species: Mouse (Mus musculus) [TaxId: 10090]

 Score =  151 bits (382), Expect = 5e-47
 Identities = 43/144 (29%), Positives = 65/144 (45%), Gaps = 6/144 (4%)

Query: 2   MSTGELLNIEPQ-ELQFPFELRKQISCSLQLSNKTDNYVAFKVKTTNPKKYCVRPNTGVV 60
           +  G LL+I P  EL F      +    + L+N T N VAFKV+TT P+KY V+P+    
Sbjct: 13  VFKGPLLHISPAEELYFGSIESGEKKTLIVLTNVTKNIVAFKVRTTAPEKYRVKPSNSSC 72

Query: 61  LPRSTCDVIVTMQSQKEAPPDMQCKDKFLLQGVVASPGATAKDITPEMFNKEA-GHHVEE 119
            P ++ D+IV+          +  +D+FL+        +         F KE   + V E
Sbjct: 73  DPGASIDIIVSPH----GGLTVSAQDRFLIMAAEMEQSSGTGPAELSQFWKEVPRNKVME 128

Query: 120 CKLRVLYVAPPRPPSPVHEGSEEG 143
            +LR   V   +P S +  G   G
Sbjct: 129 HRLRCHTVESSKPNSLMLSGPSSG 152
>d1grwa_ b.1.11.2 (A:) Major sperm protein, MSP {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Length = 124 Back     information, alignment and structure
>d1rowa_ b.1.11.2 (A:) SSP-19 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Length = 107 Back     information, alignment and structure
>d1m1sa_ b.1.11.2 (A:) WR4 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Length = 109 Back     information, alignment and structure

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query244
d1wica_152 MSP domain containing protein 2, Mospd2 {Mouse (Mu 100.0
d1grwa_124 Major sperm protein, MSP {Nematode (Caenorhabditis 99.97
d1m1sa_109 WR4 {Nematode (Caenorhabditis elegans) [TaxId: 623 99.92
d1rowa_107 SSP-19 {Nematode (Caenorhabditis elegans) [TaxId: 99.91
d2co7b1128 Periplasmic chaperone SafB {Salmonella typhimurium 94.7
d1p5va1141 Chaperone protein Caf1m {Yersinia pestis [TaxId: 6 93.82
d3bwuc1121 Periplasmic chaperone FimC {Escherichia coli [TaxI 91.83
d1am9a_80 SREBP-1a {Human (Homo sapiens) [TaxId: 9606]} 87.33
d1w8oa1103 Sialidase, "linker" domain {Micromonospora viridif 86.9
d1uklc_61 SREBP-2 {Human (Homo sapiens) [TaxId: 9606]} 86.28
d2j2za1124 Pilus chaperone PapD, N-domain {Escherichia coli [ 84.34
d1nlwa_79 Mad protein {Human (Homo sapiens) [TaxId: 9606]} 82.74
d1nkpb_83 Max protein {Human (Homo sapiens) [TaxId: 9606]} 82.57
d1nkpa_88 Myc proto-oncogene protein {Human (Homo sapiens) [ 81.84
>d1wica_ b.1.11.2 (A:) MSP domain containing protein 2, Mospd2 {Mouse (Mus musculus) [TaxId: 10090]} Back     information, alignment and structure
class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: PapD-like
family: MSP-like
domain: MSP domain containing protein 2, Mospd2
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=100.00  E-value=2e-34  Score=236.80  Aligned_cols=136  Identities=29%  Similarity=0.463  Sum_probs=120.1

Q ss_pred             CCCcceEEeCC-eeeeeccCCCeeEEEEEEEcCCCCeEEEEeeecCCCcEEEeCCCeeeCCCCeEEEEEEeccCCCCCCC
Q 026049            3 STGELLNIEPQ-ELQFPFELRKQISCSLQLSNKTDNYVAFKVKTTNPKKYCVRPNTGVVLPRSTCDVIVTMQSQKEAPPD   81 (244)
Q Consensus         3 ~~~~lL~I~P~-eL~F~~~~~~~~~~~L~L~N~s~~~VAFKVKTT~P~~Y~VrP~~GiI~P~~s~~V~Itlq~~~e~p~d   81 (244)
                      +.++||.|+|. +|+|.+++++.++|.|+|+|+++++||||||||+|++|+|||++|+|.||++++|.|++++.    +.
T Consensus        14 ~~~~lL~i~P~~~L~F~~~~~~~~~~~l~l~N~s~~~vaFKiktt~p~~y~V~P~~G~i~p~~~~~I~v~~~~~----~~   89 (152)
T d1wica_          14 FKGPLLHISPAEELYFGSIESGEKKTLIVLTNVTKNIVAFKVRTTAPEKYRVKPSNSSCDPGASIDIIVSPHGG----LT   89 (152)
T ss_dssp             BCCSSBCBBSSSCBCCCCSSSSCCCEEEEEEBCSSSCEEEEEEESCTTTEEEESSEEEECTTCEEEEEEEECSS----SC
T ss_pred             cCCCeEEEcCCCCeEeCCCCCCeEEEEEEEECCCCCeEEEEEEcCCCccEEEECCceEECCCCEEEEEEEECCC----Cc
Confidence            46789999996 79999999999999999999999999999999999999999999999999999999999865    23


Q ss_pred             CCCCceEEEEEEEcCCCCC--cCCcchhhhcccCCCcceEEEeEEEEeCCCCCCCCCCCCCCCC
Q 026049           82 MQCKDKFLLQGVVASPGAT--AKDITPEMFNKEAGHHVEECKLRVLYVAPPRPPSPVHEGSEEG  143 (244)
Q Consensus        82 ~~~kDKFlVqs~~v~~~~~--~~di~~~~f~k~~~~~i~e~KLrv~f~~p~~~~s~~~~~~~~~  143 (244)
                      ++|+|||+|+++.++++.+  ..|+ .+||+...+..++++||+|+|+.++.|++++..|+++|
T Consensus        90 ~~~kdKFli~~~~v~~~~~~~~~d~-~~~wk~~~~~~i~~~kLkv~~~~~~~p~s~~~~~~~~G  152 (152)
T d1wica_          90 VSAQDRFLIMAAEMEQSSGTGPAEL-SQFWKEVPRNKVMEHRLRCHTVESSKPNSLMLSGPSSG  152 (152)
T ss_dssp             CCSSCCEEEEEEECCSSCCCSHHHH-HHHHHHSCTTTCEEEEECBCCCCSCSSSSSCCCCCSCC
T ss_pred             ccCCCcEEEEEEEeCCCCCCCccCH-HHHhhcCCcCcEEEEEEEEEEeCCCCCCCccccCCCCC
Confidence            5799999999999986543  3455 37898877888999999999999999888887776654
>d1grwa_ b.1.11.2 (A:) Major sperm protein, MSP {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Back     information, alignment and structure
>d1m1sa_ b.1.11.2 (A:) WR4 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Back     information, alignment and structure
>d1rowa_ b.1.11.2 (A:) SSP-19 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Back     information, alignment and structure
>d2co7b1 b.1.11.1 (B:8-135) Periplasmic chaperone SafB {Salmonella typhimurium [TaxId: 90371]} Back     information, alignment and structure
>d1p5va1 b.1.11.1 (A:7-147) Chaperone protein Caf1m {Yersinia pestis [TaxId: 632]} Back     information, alignment and structure
>d3bwuc1 b.1.11.1 (C:1-121) Periplasmic chaperone FimC {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1am9a_ a.38.1.1 (A:) SREBP-1a {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1w8oa1 b.1.18.2 (A:403-505) Sialidase, "linker" domain {Micromonospora viridifaciens [TaxId: 1881]} Back     information, alignment and structure
>d1uklc_ a.38.1.1 (C:) SREBP-2 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d2j2za1 b.1.11.1 (A:1-124) Pilus chaperone PapD, N-domain {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1nlwa_ a.38.1.1 (A:) Mad protein {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1nkpb_ a.38.1.1 (B:) Max protein {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1nkpa_ a.38.1.1 (A:) Myc proto-oncogene protein {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure