Citrus Sinensis ID: 026060

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240----
Protein Sequence
MWIWRALILLQLVNGVLGWGKEGHFAICKIAEGYLTEDALAAVKELLPDSAEGDLANVCSWADEVRFHMRWSSPLHYVDTPDFMCNYKYCRDCHDSVGRKNRCVTGAIYNYTMQLKSGYQDSISVEKYNLTEALMFLSHFIGDVHQPLHVGFIGDKGGNTITVRWYRRKTNLHHVWDTMIIDSALKTYYDSDIAVMIQSIQRNITDGWSNDVSSWENCANNQTVCPNGGHHWIPFHLADTLLKV
Secondary Structure (PSIPRED)
cHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHccHHHHHHHHHHcccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHccccccccHHHHHHHHHHHHHHHHHHcccccccccccccccccEEEEEEcccccccHHHcHHHHHHHHHHHccHHHHHHHHHHHHHHHHccccccHHHHHHHHccccccccccccccccccccccccc
Secondary Structure Prediction (SSPRO)
cHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHccHHHHHHHHHHccccccccHHHHcccHHHHHHccccccccEEEcccccccccccccccccccccccccHHHHHHHHHHHHHccccccccccHHHHHHHHHHHHHHHHHcccHHHccccccccccEEEEEEcccccccHHHHcHHHHHHHHHccccccHHHHHHHHHHHHHcccHHHHHHHHHcccccccccccccccEcEEEccccccc
Coil and Loop (DISEMBL)
MWIWRALILLQLVNgvlgwgkegHFAICKIAEGYLTEDALAAVKELlpdsaegdlanvcswadEVRFhmrwssplhyvdtpdfmcnykycrdchdsvgrknrcvtGAIYNYTMQLKSGYQDSISVEKYNLTEALMFLSHFigdvhqplhvgfigdkggntiTVRWYRRKTNLHHVWDTMIIDSALKTYYDSDIAVMIQSIQRNitdgwsndvsswencannqtvcpngghhwipfhLADTLLKV
Flexible Loop (DISEMBL)
MWIWRALILLQLVNGVLGWGKEGHFAICKIAEGYLTEDALAAVKELLPDSAEGDLANVCSWADEVRFHMRWSSPLHYVDTPDFMCNYKYCRDCHDSVGRKNRCVTGAIYNYTMQLKSGYQDSISVEKYNLTEALMFLSHFIGDVHQPLHVGFIGDKGGNTITVRWYRRktnlhhvwdTMIIDSALKTYYDSDIAVMIQSIQRNITDGWSNDVSSWENCANNQTVCPNGGHHWIPFHLADTLLKV
Low Complexity Region (SEG)
MWIWRALILLQLVNGVLGWGKEGHFAICKIAEGYLTEDALAAVKELLPDSAEGDLANVCSWADEVRFHMRWSSPLHYVDTPDFMCNYKYCRDCHDSVGRKNRCVTGAIYNYTMQLKSGYQDSISVEKYNLTEALMFLSHFIGDVHQPLHVGFIGDKGGNTITVRWYRRKTNLHHVWDTMIIDSALKTYYDSDIAVMIQSIQRNITDGWSNDVSSWENCANNQTVCPNGGHHWIPFHLADTLLKV
Disordered region (IsUnstruct)
*WIWRALILLQLVNGVLGWGKEGHFAICKIAEGYLTEDALAAVKELLPDSAEGDLANVCSWADEVRFHMRWSSPLHYVDTPDFMCNYKYCRDCHDSVGRKNRCVTGAIYNYTMQLKSGYQDSISVEKYNLTEALMFLSHFIGDVHQPLHVGFIGDKGGNTITVRWYRRKTNLHHVWDTMIIDSALKTYYDSDIAVMIQSIQRNITDGWSNDVSSWENCANNQTVCPNGGHHWIPFHLADTL***
Disordered Region (DISOPRED)
MWIWRALILLQLVNGVLGWGKEGHFAICKIAEGYLTEDALAAVKELLPDSAEGDLANVCSWADEVRFHMRWSSPLHYVDTPDFMCNYKYCRDCHDSVGRKNRCVTGAIYNYTMQLKSGYQDSISVEKYNLTEALMFLSHFIGDVHQPLHVGFIGDKGGNTITVRWYRRKTNLHHVWDTMIIDSALKTYYDSDIAVMIQSIQRNITDGWSNDVSSWENCANNQTVCPNGGHHWIPFHLADTLLKV
Disordered Region (DISEMBL)
MWIWRALILLQLVNGVLGWGKEGHFAICKIAEGYLTEDALAAVKELLPDSAEGDLANVCSWADEVRFHMRWSSPLHYVDTPDFMCNYKYCRDCHDSVGRKNRCVTGAIYNYTMQLKSGYQDSISVEKYNLTEALMFLSHFIGDVHQPLHVGFIGDKGGNTITVRWYRRKTNLHHVWDTMIIDSALKTYYDSDIAVMIQSIQRNITDGWSNDVSSWENCANNQTVCPNGGHHWIPFHLADTLLKV
Disordered Region (DISPRO)
MWIWRALILLQLVNGVLGWGKEGHFAICKIAEGYLTEDALAAVKELLPDSAEGDLANVCSWADEVRFHMRWSSPLHYVDTPDFMCNYKYCRDCHDSVGRKNRCVTGAIYNYTMQLKSGYQDSISVEKYNLTEALMFLSHFIGDVHQPLHVGFIGDKGGNTITVRWYRRKTNLHHVWDTMIIDSALKTYYDSDIAVMIQSIQRNITDGWSNDVSSWENCANNQTVCPNGGHHWIPFHLADTLLKV
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
ooooooooooooHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (Phobius)
SSSSSSSSSSSSSSSSSSoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
SSSSSSSSSSSSSSSSSSSooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP NN Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Coiled Coils (COILS)
MWIWRALILLQLVNGVLGWGKEGHFAICKIAEGYLTEDALAAVKELLPDSAEGDLANVCSWADEVRFHMRWSSPLHYVDTPDFMCNYKYCRDCHDSVGRKNRCVTGAIYNYTMQLKSGYQDSISVEKYNLTEALMFLSHFIGDVHQPLHVGFIGDKGGNTITVRWYRRKTNLHHVWDTMIIDSALKTYYDSDIAVMIQSIQRNITDGWSNDVSSWENCANNQTVCPNGGHHWIPFHLADTLLKV
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	244	2.2.26 [Sep-21-2011]
F4JJL0	299	Endonuclease 4 OS=Arabido	yes	no	0.926	0.755	0.679	2e-95
F4JJL3	296	Endonuclease 5 OS=Arabido	no	no	0.930	0.766	0.582	2e-79
Q8LDW6	294	Endonuclease 3 OS=Arabido	no	no	0.909	0.755	0.602	9e-79
Q9C9G4	290	Endonuclease 2 OS=Arabido	no	no	0.889	0.748	0.561	5e-70
Q9SXA6	305	Endonuclease 1 OS=Arabido	no	no	0.872	0.698	0.509	5e-62
P24021	287	Nuclease S1 OS=Aspergillu	yes	no	0.790	0.672	0.336	9e-21
P24289	270	Nuclease P1 OS=Penicilliu	N/A	no	0.729	0.659	0.350	6e-18
P24504	270	Nuclease PA3 OS=Penicilli	N/A	no	0.729	0.659	0.350	6e-18

>sp|F4JJL0|ENDO4_ARATH Endonuclease 4 OS=Arabidopsis thaliana GN=ENDO4 PE=3 SV=1

 Score =  348 bits (892), Expect = 2e-95,   Method: Compositional matrix adjust.
 Identities = 155/228 (67%), Positives = 190/228 (83%), Gaps = 2/228 (0%)

Query: 2   WIWRALILLQLVNGVLGWGKEGHFAICKIAEGYLTEDALAAVKELLPDSAEGDLANVCSW 61
           W  R L+L QL+NG L WGKEGH+ +CKIAE Y  E+ +AAVK+LLP SA+GDLA+VCSW
Sbjct: 8   WFARVLVLTQLINGALCWGKEGHYTVCKIAESYFEEETVAAVKKLLPKSADGDLASVCSW 67

Query: 62  ADEVRFHM--RWSSPLHYVDTPDFMCNYKYCRDCHDSVGRKNRCVTGAIYNYTMQLKSGY 119
            DE++ H   RW+SPLHYVDTPD+ CNY+YCRDCHD+   ++RCVTGAI+NYTMQL S  
Sbjct: 68  PDEIKHHWQWRWTSPLHYVDTPDYRCNYEYCRDCHDTHKNQDRCVTGAIFNYTMQLMSAS 127

Query: 120 QDSISVEKYNLTEALMFLSHFIGDVHQPLHVGFIGDKGGNTITVRWYRRKTNLHHVWDTM 179
           ++S ++  YNLTEALMFLSHFIGD+HQPLHVGF+GD+GGNTITVRWYRRKTNLHHVWD M
Sbjct: 128 ENSDTIVHYNLTEALMFLSHFIGDIHQPLHVGFLGDEGGNTITVRWYRRKTNLHHVWDNM 187

Query: 180 IIDSALKTYYDSDIAVMIQSIQRNITDGWSNDVSSWENCANNQTVCPN 227
           II+SALKTYY+  + +MI+++Q N+T+ WSNDV  WE+C  NQT CPN
Sbjct: 188 IIESALKTYYNKSLPLMIEALQANLTNDWSNDVPLWESCQLNQTACPN 235

Probable endonuclease (By similarity). Can not hydrolyze single stranded DNA and does not cleave mismatches.
Arabidopsis thaliana (taxid: 3702)
EC: 3EC: .EC: 1EC: .EC: 3EC: 0EC: .EC: 1

>sp|F4JJL3|ENDO5_ARATH Endonuclease 5 OS=Arabidopsis thaliana GN=ENDO5 PE=2 SV=1

 Score =  295 bits (755), Expect = 2e-79,   Method: Compositional matrix adjust.
 Identities = 134/230 (58%), Positives = 178/230 (77%), Gaps = 3/230 (1%)

Query: 1   MWIWRALILLQLVNGVLGWGKEGHFAICKIAEGYLTEDALAAVKELLPDSAEGD-LANVC 59
           +WI   L+L  LV+G L WGK+GH+ +CK+AEG+  +D +AAVK+LLP+S +G  LA+ C
Sbjct: 3   LWIVSVLVLTHLVHGALCWGKDGHYTVCKLAEGFFEDDTIAAVKKLLPESVDGGGLADFC 62

Query: 60  SWADEVR--FHMRWSSPLHYVDTPDFMCNYKYCRDCHDSVGRKNRCVTGAIYNYTMQLKS 117
           SW DE++     +W+S LHYV+TP++ CNY+YCRDCHD+   K+ CVTGAI+NYT QL S
Sbjct: 63  SWPDEIKKLSQWQWTSTLHYVNTPEYRCNYEYCRDCHDTHKHKDWCVTGAIFNYTNQLMS 122

Query: 118 GYQDSISVEKYNLTEALMFLSHFIGDVHQPLHVGFIGDKGGNTITVRWYRRKTNLHHVWD 177
             ++S ++  YNLTEAL+FLSH++GDVHQPLH GF+GD GGNTI V WY  K+NLHHVWD
Sbjct: 123 ASENSQNIVHYNLTEALLFLSHYMGDVHQPLHTGFLGDLGGNTIIVNWYHNKSNLHHVWD 182

Query: 178 TMIIDSALKTYYDSDIAVMIQSIQRNITDGWSNDVSSWENCANNQTVCPN 227
            MIIDSAL+TYY+S +  MIQ++Q  + +GWSNDV SW++C  +Q  CPN
Sbjct: 183 NMIIDSALETYYNSSLPHMIQALQAKLKNGWSNDVPSWKSCHFHQKACPN 232

Hydrolyzes only single stranded DNA and RNA without apparent specificity for bases. Endonuclease that recognizes and cleaves some mismatches with high efficiency, including heteroduplex double-stranded DNA; mostly efficient on T/G, A/G and G/G mismatches, less efficient for T/T and poorly efficient for C/C, A/A, T/C and A/C.

Arabidopsis thaliana (taxid: 3702)

EC: 3

EC: .

EC: 1

EC: .

EC: 3

EC: 0

EC: .

EC: 1

>sp|Q8LDW6|ENDO3_ARATH Endonuclease 3 OS=Arabidopsis thaliana GN=ENDO3 PE=2 SV=1

 Score =  293 bits (749), Expect = 9e-79,   Method: Compositional matrix adjust.
 Identities = 138/229 (60%), Positives = 170/229 (74%), Gaps = 7/229 (3%)

Query: 1   MWIWRALILLQLVNGVLGWGKEGHFAICKIAEGYLTEDALAAVKELLPDSAEGDLANVCS 60
           MWI   L+L QLVNG L WG  GH+A+CKIA+ Y  ED + AVK+LLP+SA G+LA VCS
Sbjct: 7   MWIVSILVLTQLVNGALCWGDAGHYAVCKIAQSYFEEDTVVAVKKLLPESANGELAAVCS 66

Query: 61  WADEVRF--HMRWSSPLHYVDTPDFMCNYKYCRDCHDSVGRKNRCVTGAIYNYTMQLKSG 118
           W DE++     RW+S LH+ DTPD+ CNY+Y RDC      K+ CVTGAI+NYT QL S 
Sbjct: 67  WPDEIKKLPQWRWTSALHFADTPDYKCNYEYSRDC-----PKDWCVTGAIFNYTNQLMST 121

Query: 119 YQDSISVEKYNLTEALMFLSHFIGDVHQPLHVGFIGDKGGNTITVRWYRRKTNLHHVWDT 178
            ++S S+  YNLTEALMFLSH++GD+HQPLH GFIGD GGN I V WY ++TNLH VWD 
Sbjct: 122 SENSQSIVHYNLTEALMFLSHYMGDIHQPLHEGFIGDLGGNKIKVHWYNQETNLHRVWDD 181

Query: 179 MIIDSALKTYYDSDIAVMIQSIQRNITDGWSNDVSSWENCANNQTVCPN 227
           MII+SAL+TYY+S +  MI  +Q  + +GWSNDV SWE+C  NQT CPN
Sbjct: 182 MIIESALETYYNSSLPRMIHELQAKLKNGWSNDVPSWESCQLNQTACPN 230

Probable endonuclease (By similarity). Can not hydrolyze single stranded DNA and does not cleave mismatches.

Arabidopsis thaliana (taxid: 3702)

EC: 3

EC: .

EC: 1

EC: .

EC: 3

EC: 0

EC: .

EC: 1

>sp|Q9C9G4|ENDO2_ARATH Endonuclease 2 OS=Arabidopsis thaliana GN=ENDO2 PE=2 SV=1

 Score =  264 bits (674), Expect = 5e-70,   Method: Compositional matrix adjust.
 Identities = 123/219 (56%), Positives = 156/219 (71%), Gaps = 2/219 (0%)

Query: 9   LLQLVNGVLGWGKEGHFAICKIAEGYLTEDALAAVKELLPDSAEGDLANVCSWADEVRFH 68
           LL     + GWGKEGH  ICKIA+  L E A  AVKELLP+SAEGDL+++C WAD V+F 
Sbjct: 18  LLYAAPNIHGWGKEGHEIICKIAQTRLDETAAKAVKELLPESAEGDLSSLCLWADRVKFR 77

Query: 69  MRWSSPLHYVDTPDFMCNYKYCRDCHDSVGRKNRCVTGAIYNYTMQLKSGYQDSISVEKY 128
             WSSPLHY++TPD  C+Y+Y RDC D  G K RCV GAIYNYT QL S    + S  +Y
Sbjct: 78  YHWSSPLHYINTPD-ACSYQYNRDCKDESGEKGRCVAGAIYNYTTQLLSYKTAASSQSQY 136

Query: 129 NLTEALMFLSHFIGDVHQPLHVGFIGDKGGNTITVRWYRRKTNLHHVWDTMIIDSALKTY 188
           NLTEAL+F+SHF+GD+HQPLHV +  DKGGNTI V WY RK NLHH+WD+ II++A    
Sbjct: 137 NLTEALLFVSHFMGDIHQPLHVSYASDKGGNTIEVHWYTRKANLHHIWDSNIIETAEADL 196

Query: 189 YDSDIAVMIQSIQRNITDGWSNDVSSWENCANNQTVCPN 227
           Y+S +  M+ ++++NIT  W++ V  WE C   +T CP+
Sbjct: 197 YNSALEGMVDALKKNITTEWADQVKRWETC-TKKTACPD 234

Probable endonuclease (By similarity). Can not hydrolyze single stranded DNA and does not cleave mismatches.

Arabidopsis thaliana (taxid: 3702)

EC: 3

EC: .

EC: 1

EC: .

EC: 3

EC: 0

EC: .

EC: 1

>sp|Q9SXA6|ENDO1_ARATH Endonuclease 1 OS=Arabidopsis thaliana GN=ENDO1 PE=1 SV=1

 Score =  237 bits (605), Expect = 5e-62,   Method: Compositional matrix adjust.
 Identities = 111/218 (50%), Positives = 153/218 (70%), Gaps = 5/218 (2%)

Query: 13  VNGVLGWGKEGHFAICKIAEGYLTEDALAAVKELLPDSAEGDLANVCSWADEVR--FHMR 70
           V+ V  W KEGH   C+IA+  L       V+ LLPD  +GDL+ +C W D++R  +  R
Sbjct: 23  VSSVRSWSKEGHILTCRIAQNLLEAGPAHVVENLLPDYVKGDLSALCVWPDQIRHWYKYR 82

Query: 71  WSSPLHYVDTPDFMCNYKYCRDCHDSVGRKNRCVTGAIYNYTMQLKSGYQDSISVEKYNL 130
           W+S LHY+DTPD  C+Y+Y RDCHD  G K+ CV GAI N+T QL+  Y +  S  +YN+
Sbjct: 83  WTSHLHYIDTPDQACSYEYSRDCHDQHGLKDMCVDGAIQNFTSQLQH-YGEGTSDRRYNM 141

Query: 131 TEALMFLSHFIGDVHQPLHVGFIGDKGGNTITVRWYRRKTNLHHVWDTMIIDSALKTYYD 190
           TEAL+FLSHF+GD+HQP+HVGF  D+GGNTI +RWY+ K+NLHHVWD  II +ALK  YD
Sbjct: 142 TEALLFLSHFMGDIHQPMHVGFTSDEGGNTIDLRWYKHKSNLHHVWDREIILTALKENYD 201

Query: 191 SDIAVMIQSIQRNITDG-WSNDVSSWENCANNQTVCPN 227
            ++ ++ + +++NIT+G W +D+SSW  C N+   CP+
Sbjct: 202 KNLDLLQEDLEKNITNGLWHDDLSSWTEC-NDLIACPH 238

Hydrolyzes only single stranded DNA and RNA without apparent specificity for bases during senescence. Endonuclease that recognizes and cleaves all types of mismatches with high efficiency, including heteroduplex double-stranded DNA. Maybe involved in programmed cell death (PCD) and senescence.

Arabidopsis thaliana (taxid: 3702)

EC: 3

EC: .

EC: 1

EC: .

EC: 3

EC: 0

EC: .

EC: 1

>sp|P24021|NUS1_ASPOR Nuclease S1 OS=Aspergillus oryzae (strain ATCC 42149 / RIB 40) GN=nucS PE=1 SV=2

 Score =  100 bits (249), Expect = 9e-21,   Method: Compositional matrix adjust.
 Identities = 73/217 (33%), Positives = 102/217 (47%), Gaps = 24/217 (11%)

Query: 10  LQLVNGVLGWGKEGHFAICKIAEGYLTEDALAAVKELLPDSAEGDLANVCSWADEVRF-- 67
           L L     GWG  GH  +  IA+ ++     +  + +L D +   LANV +WAD  ++  
Sbjct: 12  LALAQLTYGWGNLGHETVAYIAQSFVASSTESFCQNILGDDSTSYLANVATWADTYKYTD 71

Query: 68  HMRWSSPLHYVDT---PDFMCNYKYCRDCHDSVGRKNRCVTGAIYNYTMQLKSGYQDSIS 124
              +S P H++D    P   C   Y RDC  S G    C   AI NYT         +I 
Sbjct: 72  AGEFSKPYHFIDAQDNPPQSCGVDYDRDCG-SAG----CSISAIQNYT---------NIL 117

Query: 125 VEKYNLTE---ALMFLSHFIGDVHQPLHVGFIGDKGGNTITVRWYRRKTNLHHVWDTMII 181
           +E  N +E   AL F+ H IGD+HQPLH   + + GGN I V +    TNLHH+WDT + 
Sbjct: 118 LESPNGSEALNALKFVVHIIGDIHQPLHDENL-EAGGNGIDVTYDGETTNLHHIWDTNMP 176

Query: 182 DSALKTYYDSDIAVMIQSIQRNITDG-WSNDVSSWEN 217
           + A   Y  S        +   I  G +S+   SW +
Sbjct: 177 EEAAGGYSLSVAKTYADLLTERIKTGTYSSKKDSWTD 213

Hydrolyzes only single stranded DNA and RNA without apparent specificity for bases.

Aspergillus oryzae (strain ATCC 42149 / RIB 40) (taxid: 510516)

EC: 3

EC: .

EC: 1

EC: .

EC: 3

EC: 0

EC: .

EC: 1

>sp|P24289|NUP1_PENCI Nuclease P1 OS=Penicillium citrinum PE=1 SV=1

 Score = 91.3 bits (225), Expect = 6e-18,   Method: Compositional matrix adjust.
 Identities = 68/194 (35%), Positives = 96/194 (49%), Gaps = 16/194 (8%)

Query: 19  WGKEGHFAICKIAEGYLTEDALAAVKELLPDSAEGDLANVCSWADEVRFHM--RWSSPLH 76
           WG  GH  +  +A+ Y++ +A +  + +L  S+   LA++ SWADE R     +WS+ LH
Sbjct: 1   WGALGHATVAYVAQHYVSPEAASWAQGILGSSSSSYLASIASWADEYRLTSAGKWSASLH 60

Query: 77  YVDT---PDFMCNYKYCRDCHDSVGRKNRCVTGAIYNYTMQLKSGYQDSISVEKYNLTEA 133
           ++D    P   CN  Y RDC  S      C   AI NYT ++        S+   N  EA
Sbjct: 61  FIDAEDNPPTNCNVDYERDCGSS-----GCSISAIANYTQRVSDS-----SLSSENHAEA 110

Query: 134 LMFLSHFIGDVHQPLHVGFIGDKGGNTITVRWYRRKTNLHHVWDTMIIDSALKTYYDSDI 193
           L FL HFIGD+ QPLH       GGN I V +     NLH  WDT +    +  +  SD 
Sbjct: 111 LRFLVHFIGDMTQPLHDEAYA-VGGNKINVTFDGYHDNLHSDWDTYMPQKLIGGHALSDA 169

Query: 194 AVMIQSIQRNITDG 207
               +++ +NI  G
Sbjct: 170 ESWAKTLVQNIESG 183

Hydrolyzes only single stranded DNA and RNA without apparent specificity for bases.

Penicillium citrinum (taxid: 5077)

EC: 3

EC: .

EC: 1

EC: .

EC: 3

EC: 0

EC: .

EC: 1

>sp|P24504|NUP3_PENSQ Nuclease PA3 OS=Penicillium sp. PE=1 SV=1

 Score = 91.3 bits (225), Expect = 6e-18,   Method: Compositional matrix adjust.
 Identities = 68/194 (35%), Positives = 96/194 (49%), Gaps = 16/194 (8%)

Query: 19  WGKEGHFAICKIAEGYLTEDALAAVKELLPDSAEGDLANVCSWADEVRFHM--RWSSPLH 76
           WG  GH  +  +A+ Y++ +A +  + +L  S+   LA++ SWADE R     +WS+ LH
Sbjct: 1   WGALGHATVAYVAQHYVSPEAASWAQGILGSSSSSYLASIASWADEYRLTSAGKWSASLH 60

Query: 77  YVDT---PDFMCNYKYCRDCHDSVGRKNRCVTGAIYNYTMQLKSGYQDSISVEKYNLTEA 133
           ++D    P   CN  Y RDC  S      C   AI NYT ++        S+   N  EA
Sbjct: 61  FIDAEDNPPTNCNVDYERDCGSS-----GCSISAIANYTQRVSDS-----SLSSENHAEA 110

Query: 134 LMFLSHFIGDVHQPLHVGFIGDKGGNTITVRWYRRKTNLHHVWDTMIIDSALKTYYDSDI 193
           L FL HFIGD+ QPLH       GGN I V +     NLH  WDT +    +  +  SD 
Sbjct: 111 LRFLVHFIGDMTQPLHDEAYA-VGGNKINVTFDGYHDNLHSDWDTYMPQKLIGGHALSDA 169

Query: 194 AVMIQSIQRNITDG 207
               +++ +NI  G
Sbjct: 170 ESWAKTLVQNIESG 183

Hydrolyzes only single stranded DNA and RNA without apparent specificity for bases.

Penicillium sp (taxid: 5081)

EC: 3

EC: .

EC: 1

EC: .

EC: 3

EC: .

EC: 6

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	244
224116204	297	predicted protein [Populus trichocarpa]	0.930	0.764	0.766	1e-102
296080968	332	unnamed protein product [Vitis vinifera]	0.930	0.683	0.759	1e-101
225469300	323	PREDICTED: nuclease S1 [Vitis vinifera]	0.930	0.702	0.759	1e-101
255560824	298	Nuclease PA3, putative [Ricinus communis	0.930	0.761	0.748	1e-100
379046752	309	PARS II endonuclease [Petroselinum crisp	0.930	0.734	0.731	6e-97
357475823	383	Nuclease S1 [Medicago truncatula] gi|355	0.872	0.556	0.748	1e-95
297803994	299	hypothetical protein ARALYDRAFT_492719 [	0.930	0.759	0.681	2e-94
403220385	310	endonuclease [Apium graveolens]	0.930	0.732	0.709	3e-94
22328857	299	endonuclease 4 [Arabidopsis thaliana] gi	0.926	0.755	0.679	1e-93
449492775	299	PREDICTED: endonuclease 4-like [Cucumis	0.926	0.755	0.701	2e-91

>gi|224116204|ref|XP_002317238.1| predicted protein [Populus trichocarpa] gi|222860303|gb|EEE97850.1| predicted protein [Populus trichocarpa]

 Score =  377 bits (967), Expect = e-102,   Method: Compositional matrix adjust.
 Identities = 174/227 (76%), Positives = 194/227 (85%)

Query: 1   MWIWRALILLQLVNGVLGWGKEGHFAICKIAEGYLTEDALAAVKELLPDSAEGDLANVCS 60
           +W  RAL+LLQ V G+LGWGKEGH+A CKIAEGYLT +ALAAVKELLP+SAEGDLANVCS
Sbjct: 7   LWAVRALVLLQFVTGILGWGKEGHYATCKIAEGYLTAEALAAVKELLPESAEGDLANVCS 66

Query: 61  WADEVRFHMRWSSPLHYVDTPDFMCNYKYCRDCHDSVGRKNRCVTGAIYNYTMQLKSGYQ 120
           W DE+RFH  WSS LHYVDTPDF CNY+Y RDCHDS GRK+RCVTGAIYNYT QL S YQ
Sbjct: 67  WPDEIRFHYHWSSALHYVDTPDFRCNYEYFRDCHDSSGRKDRCVTGAIYNYTNQLLSLYQ 126

Query: 121 DSISVEKYNLTEALMFLSHFIGDVHQPLHVGFIGDKGGNTITVRWYRRKTNLHHVWDTMI 180
           +S S   YNLTEALMFLSHFIGDVHQPLHVGF+GD GGNTI V WYRRK+NLHHVWD MI
Sbjct: 127 NSNSESNYNLTEALMFLSHFIGDVHQPLHVGFLGDLGGNTIQVHWYRRKSNLHHVWDNMI 186

Query: 181 IDSALKTYYDSDIAVMIQSIQRNITDGWSNDVSSWENCANNQTVCPN 227
           I+SALKT+Y SD+A MI++IQ NIT+ WSN    WE+CA+N TVCPN
Sbjct: 187 IESALKTFYSSDLATMIRAIQNNITENWSNQQPLWEHCAHNHTVCPN 233

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|296080968|emb|CBI18600.3| unnamed protein product [Vitis vinifera]

 Score =  374 bits (959), Expect = e-101,   Method: Compositional matrix adjust.
 Identities = 174/229 (75%), Positives = 198/229 (86%), Gaps = 2/229 (0%)

Query: 1   MWIWRALILLQLVNGVLGWGKEGHFAICKIAEGYLTEDALAAVKELLPDSAEGDLANVCS 60
           + I RAL+LLQL+ G+L WGKEGH+A+CKIAEG+L+EDAL AVK LLPD AEGDLA VCS
Sbjct: 7   LLIVRALVLLQLIPGILSWGKEGHYAVCKIAEGFLSEDALGAVKALLPDYAEGDLAAVCS 66

Query: 61  WADEVR--FHMRWSSPLHYVDTPDFMCNYKYCRDCHDSVGRKNRCVTGAIYNYTMQLKSG 118
           WADE+R  FH RWS PLHYVDTPD+ CNY+YCRDCHD  G K+ CVTGAIYNYT QL SG
Sbjct: 67  WADEIRHNFHWRWSGPLHYVDTPDYRCNYEYCRDCHDFRGHKDICVTGAIYNYTKQLTSG 126

Query: 119 YQDSISVEKYNLTEALMFLSHFIGDVHQPLHVGFIGDKGGNTITVRWYRRKTNLHHVWDT 178
           Y +S S  +YNLTEALMFLSHFIGDVHQPLHVGF GD+GGNTI VRWYRRKTNLHH+WD 
Sbjct: 127 YHNSGSEIRYNLTEALMFLSHFIGDVHQPLHVGFTGDEGGNTIIVRWYRRKTNLHHIWDN 186

Query: 179 MIIDSALKTYYDSDIAVMIQSIQRNITDGWSNDVSSWENCANNQTVCPN 227
           MIIDSALKTYY+SD+A+MIQ+IQRNIT  WS D+SSW+NCA++ T CPN
Sbjct: 187 MIIDSALKTYYNSDLAIMIQAIQRNITGDWSFDISSWKNCASDDTACPN 235

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225469300|ref|XP_002269258.1| PREDICTED: nuclease S1 [Vitis vinifera]

 Score =  374 bits (959), Expect = e-101,   Method: Compositional matrix adjust.
 Identities = 174/229 (75%), Positives = 198/229 (86%), Gaps = 2/229 (0%)

Query: 1   MWIWRALILLQLVNGVLGWGKEGHFAICKIAEGYLTEDALAAVKELLPDSAEGDLANVCS 60
           + I RAL+LLQL+ G+L WGKEGH+A+CKIAEG+L+EDAL AVK LLPD AEGDLA VCS
Sbjct: 7   LLIVRALVLLQLIPGILSWGKEGHYAVCKIAEGFLSEDALGAVKALLPDYAEGDLAAVCS 66

Query: 61  WADEVR--FHMRWSSPLHYVDTPDFMCNYKYCRDCHDSVGRKNRCVTGAIYNYTMQLKSG 118
           WADE+R  FH RWS PLHYVDTPD+ CNY+YCRDCHD  G K+ CVTGAIYNYT QL SG
Sbjct: 67  WADEIRHNFHWRWSGPLHYVDTPDYRCNYEYCRDCHDFRGHKDICVTGAIYNYTKQLTSG 126

Query: 119 YQDSISVEKYNLTEALMFLSHFIGDVHQPLHVGFIGDKGGNTITVRWYRRKTNLHHVWDT 178
           Y +S S  +YNLTEALMFLSHFIGDVHQPLHVGF GD+GGNTI VRWYRRKTNLHH+WD 
Sbjct: 127 YHNSGSEIRYNLTEALMFLSHFIGDVHQPLHVGFTGDEGGNTIIVRWYRRKTNLHHIWDN 186

Query: 179 MIIDSALKTYYDSDIAVMIQSIQRNITDGWSNDVSSWENCANNQTVCPN 227
           MIIDSALKTYY+SD+A+MIQ+IQRNIT  WS D+SSW+NCA++ T CPN
Sbjct: 187 MIIDSALKTYYNSDLAIMIQAIQRNITGDWSFDISSWKNCASDDTACPN 235

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255560824|ref|XP_002521425.1| Nuclease PA3, putative [Ricinus communis] gi|223539324|gb|EEF40915.1| Nuclease PA3, putative [Ricinus communis]

 Score =  370 bits (951), Expect = e-100,   Method: Compositional matrix adjust.
 Identities = 170/227 (74%), Positives = 190/227 (83%)

Query: 1   MWIWRALILLQLVNGVLGWGKEGHFAICKIAEGYLTEDALAAVKELLPDSAEGDLANVCS 60
           +W+ R L+LLQ V+G+LGWGKEGH+A CKIAEGYLTEDALAAVK LLPDSAEGD A VC 
Sbjct: 8   LWVGRVLVLLQFVSGILGWGKEGHYATCKIAEGYLTEDALAAVKYLLPDSAEGDFAAVCP 67

Query: 61  WADEVRFHMRWSSPLHYVDTPDFMCNYKYCRDCHDSVGRKNRCVTGAIYNYTMQLKSGYQ 120
           WAD+VRFH  WSS LH+VDTPDF CNY+YCRDCHDS G K+RCVT AI+NYT QL S YQ
Sbjct: 68  WADQVRFHYHWSSALHFVDTPDFKCNYEYCRDCHDSAGHKDRCVTAAIFNYTNQLTSAYQ 127

Query: 121 DSISVEKYNLTEALMFLSHFIGDVHQPLHVGFIGDKGGNTITVRWYRRKTNLHHVWDTMI 180
           +  S   YNLTEALMFLSHFIGDVHQPLHVGF GD GGN I V WYRRKTNLHHVWD MI
Sbjct: 128 NFNSGFNYNLTEALMFLSHFIGDVHQPLHVGFTGDLGGNRIIVHWYRRKTNLHHVWDDMI 187

Query: 181 IDSALKTYYDSDIAVMIQSIQRNITDGWSNDVSSWENCANNQTVCPN 227
           IDSALK +Y SD+A+MIQ+IQ N+T+GWSN +  WE C NN+TVCPN
Sbjct: 188 IDSALKKFYGSDLAIMIQAIQNNMTEGWSNQLPLWEYCQNNRTVCPN 234

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|379046752|gb|AFC88012.1| PARS II endonuclease [Petroselinum crispum]

 Score =  359 bits (921), Expect = 6e-97,   Method: Compositional matrix adjust.
 Identities = 166/227 (73%), Positives = 188/227 (82%)

Query: 1   MWIWRALILLQLVNGVLGWGKEGHFAICKIAEGYLTEDALAAVKELLPDSAEGDLANVCS 60
           M  + A+  L L+  V  WGKEGHFAICKIA+G+LT+DAL AVK LLP+ A+GDLA VCS
Sbjct: 3   MLTYTAIYFLLLLPSVFSWGKEGHFAICKIAQGFLTKDALTAVKALLPEYADGDLAAVCS 62

Query: 61  WADEVRFHMRWSSPLHYVDTPDFMCNYKYCRDCHDSVGRKNRCVTGAIYNYTMQLKSGYQ 120
           WADEVRFHMRWSSPLHYVDTPDF CNYKYCRDCHDSVGRK+RCVTGAIYNYT QL  G  
Sbjct: 63  WADEVRFHMRWSSPLHYVDTPDFRCNYKYCRDCHDSVGRKDRCVTGAIYNYTEQLLLGVH 122

Query: 121 DSISVEKYNLTEALMFLSHFIGDVHQPLHVGFIGDKGGNTITVRWYRRKTNLHHVWDTMI 180
           D  S    NLTEALMFLSHF+GDVHQPLHVGF+GD+GGNTITVRWYRRKTNLHHVWDTM+
Sbjct: 123 DLDSKMNNNLTEALMFLSHFVGDVHQPLHVGFLGDEGGNTITVRWYRRKTNLHHVWDTMM 182

Query: 181 IDSALKTYYDSDIAVMIQSIQRNITDGWSNDVSSWENCANNQTVCPN 227
           I+S+LKT+Y+SD++ +IQSIQ NIT  W  D  SW NC  +Q  CP+
Sbjct: 183 IESSLKTFYNSDLSSLIQSIQSNITGIWLTDSLSWRNCTADQVACPD 229

Source: Petroselinum crispum

Species: Petroselinum crispum

Genus: Petroselinum

Family: Apiaceae

Order: Apiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357475823|ref|XP_003608197.1| Nuclease S1 [Medicago truncatula] gi|355509252|gb|AES90394.1| Nuclease S1 [Medicago truncatula]

 Score =  355 bits (910), Expect = 1e-95,   Method: Compositional matrix adjust.
 Identities = 161/215 (74%), Positives = 186/215 (86%), Gaps = 2/215 (0%)

Query: 15  GVLGWGKEGHFAICKIAEGYLTEDALAAVKELLPDSAEGDLANVCSWADEVR--FHMRWS 72
            VL WGK+GH+AICKI++ YL+EDAL AVK+LLPDSA+ DLA+VCSW DE+R  +H RWS
Sbjct: 105 NVLAWGKDGHYAICKISQEYLSEDALFAVKQLLPDSAQADLASVCSWPDEIRHNYHYRWS 164

Query: 73  SPLHYVDTPDFMCNYKYCRDCHDSVGRKNRCVTGAIYNYTMQLKSGYQDSISVEKYNLTE 132
           SPLHY+DTPDF CNY+YCRDCHDS G K+RCVTGAIYNYTMQLK    D+ S  KYNLTE
Sbjct: 165 SPLHYIDTPDFKCNYQYCRDCHDSYGHKHRCVTGAIYNYTMQLKLANADASSELKYNLTE 224

Query: 133 ALMFLSHFIGDVHQPLHVGFIGDKGGNTITVRWYRRKTNLHHVWDTMIIDSALKTYYDSD 192
           ALMFLSHF+GDVHQPLHVGF GD GGN+ITVRWYRRKTNLHHVWD MII+SALK +Y SD
Sbjct: 225 ALMFLSHFVGDVHQPLHVGFTGDLGGNSITVRWYRRKTNLHHVWDNMIIESALKKFYGSD 284

Query: 193 IAVMIQSIQRNITDGWSNDVSSWENCANNQTVCPN 227
           ++ MIQ+IQRNI+D WSNDVS WE+CA+N T CP+
Sbjct: 285 LSTMIQAIQRNISDIWSNDVSIWEHCAHNHTACPD 319

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297803994|ref|XP_002869881.1| hypothetical protein ARALYDRAFT_492719 [Arabidopsis lyrata subsp. lyrata] gi|297315717|gb|EFH46140.1| hypothetical protein ARALYDRAFT_492719 [Arabidopsis lyrata subsp. lyrata]

 Score =  351 bits (900), Expect = 2e-94,   Method: Compositional matrix adjust.
 Identities = 156/229 (68%), Positives = 191/229 (83%), Gaps = 2/229 (0%)

Query: 1   MWIWRALILLQLVNGVLGWGKEGHFAICKIAEGYLTEDALAAVKELLPDSAEGDLANVCS 60
           +W    L+L QL+NG L WGKEGH+ +CKIAE Y  E+ +AAVK+LLP+SA+GDLA+VCS
Sbjct: 7   LWFATVLVLTQLINGALCWGKEGHYTVCKIAESYFEEETVAAVKKLLPESADGDLASVCS 66

Query: 61  WADEVRFHM--RWSSPLHYVDTPDFMCNYKYCRDCHDSVGRKNRCVTGAIYNYTMQLKSG 118
           W DE++ H   RW+SPLHYVDTPD+ CNY+YCRDCHD+   ++RCVTGAI+NYTMQL S 
Sbjct: 67  WPDEIKHHWQWRWTSPLHYVDTPDYRCNYEYCRDCHDTHKHQDRCVTGAIFNYTMQLMSA 126

Query: 119 YQDSISVEKYNLTEALMFLSHFIGDVHQPLHVGFIGDKGGNTITVRWYRRKTNLHHVWDT 178
            ++S ++  YNLTEALMFLSHFIGD+HQPLHVGF+GD+GGNTITVRWYRRKTNLHHVWD 
Sbjct: 127 SENSHTIVHYNLTEALMFLSHFIGDIHQPLHVGFLGDEGGNTITVRWYRRKTNLHHVWDN 186

Query: 179 MIIDSALKTYYDSDIAVMIQSIQRNITDGWSNDVSSWENCANNQTVCPN 227
           MII+SALKTYY+  + + IQ++Q N+T GWSNDV SWE+C  NQT CPN
Sbjct: 187 MIIESALKTYYNKSLPLFIQALQTNLTHGWSNDVPSWESCQLNQTACPN 235

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|403220385|dbj|BAM38525.1| endonuclease [Apium graveolens]

 Score =  350 bits (899), Expect = 3e-94,   Method: Compositional matrix adjust.
 Identities = 161/227 (70%), Positives = 187/227 (82%)

Query: 1   MWIWRALILLQLVNGVLGWGKEGHFAICKIAEGYLTEDALAAVKELLPDSAEGDLANVCS 60
           M  +  +  L L+  V  WGK+GHFAICKIA+G+L++DAL AVK LLP+ A+GDLA VCS
Sbjct: 3   MLTYTGIYFLLLLPSVFCWGKQGHFAICKIAQGFLSKDALTAVKALLPEYADGDLAAVCS 62

Query: 61  WADEVRFHMRWSSPLHYVDTPDFMCNYKYCRDCHDSVGRKNRCVTGAIYNYTMQLKSGYQ 120
           WADEVRFHMRWSSPLHYVDTPDF CNYKYCRDCHDSVGRK+RCVTGAI+NYT QL  G  
Sbjct: 63  WADEVRFHMRWSSPLHYVDTPDFRCNYKYCRDCHDSVGRKDRCVTGAIHNYTEQLLLGVH 122

Query: 121 DSISVEKYNLTEALMFLSHFIGDVHQPLHVGFIGDKGGNTITVRWYRRKTNLHHVWDTMI 180
           D  S    NLTEALMFLSHF+GDVHQPLHVGF+GD+GGNTITVRWYRRKTNLHHVWDTM+
Sbjct: 123 DLNSKMNNNLTEALMFLSHFVGDVHQPLHVGFLGDEGGNTITVRWYRRKTNLHHVWDTMM 182

Query: 181 IDSALKTYYDSDIAVMIQSIQRNITDGWSNDVSSWENCANNQTVCPN 227
           I+S+LKT+Y+SD++ +IQ+IQ NIT  W  D  SW NC  +  VCP+
Sbjct: 183 IESSLKTFYNSDLSSLIQAIQSNITGVWLTDSLSWSNCTADHVVCPD 229

Source: Apium graveolens

Species: Apium graveolens

Genus: Apium

Family: Apiaceae

Order: Apiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|22328857|ref|NP_680734.1| endonuclease 4 [Arabidopsis thaliana] gi|391359266|sp|F4JJL0.1|ENDO4_ARATH RecName: Full=Endonuclease 4; Short=AtENDO4; AltName: Full=Deoxyribonuclease ENDO4; AltName: Full=Single-stranded-nucleate endonuclease ENDO4; Flags: Precursor gi|332659076|gb|AEE84476.1| endonuclease 4 [Arabidopsis thaliana]

 Score =  348 bits (892), Expect = 1e-93,   Method: Compositional matrix adjust.
 Identities = 155/228 (67%), Positives = 190/228 (83%), Gaps = 2/228 (0%)

Query: 2   WIWRALILLQLVNGVLGWGKEGHFAICKIAEGYLTEDALAAVKELLPDSAEGDLANVCSW 61
           W  R L+L QL+NG L WGKEGH+ +CKIAE Y  E+ +AAVK+LLP SA+GDLA+VCSW
Sbjct: 8   WFARVLVLTQLINGALCWGKEGHYTVCKIAESYFEEETVAAVKKLLPKSADGDLASVCSW 67

Query: 62  ADEVRFHM--RWSSPLHYVDTPDFMCNYKYCRDCHDSVGRKNRCVTGAIYNYTMQLKSGY 119
            DE++ H   RW+SPLHYVDTPD+ CNY+YCRDCHD+   ++RCVTGAI+NYTMQL S  
Sbjct: 68  PDEIKHHWQWRWTSPLHYVDTPDYRCNYEYCRDCHDTHKNQDRCVTGAIFNYTMQLMSAS 127

Query: 120 QDSISVEKYNLTEALMFLSHFIGDVHQPLHVGFIGDKGGNTITVRWYRRKTNLHHVWDTM 179
           ++S ++  YNLTEALMFLSHFIGD+HQPLHVGF+GD+GGNTITVRWYRRKTNLHHVWD M
Sbjct: 128 ENSDTIVHYNLTEALMFLSHFIGDIHQPLHVGFLGDEGGNTITVRWYRRKTNLHHVWDNM 187

Query: 180 IIDSALKTYYDSDIAVMIQSIQRNITDGWSNDVSSWENCANNQTVCPN 227
           II+SALKTYY+  + +MI+++Q N+T+ WSNDV  WE+C  NQT CPN
Sbjct: 188 IIESALKTYYNKSLPLMIEALQANLTNDWSNDVPLWESCQLNQTACPN 235

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449492775|ref|XP_004159097.1| PREDICTED: endonuclease 4-like [Cucumis sativus]

 Score =  340 bits (873), Expect = 2e-91,   Method: Compositional matrix adjust.
 Identities = 160/228 (70%), Positives = 180/228 (78%), Gaps = 2/228 (0%)

Query: 2   WIWRALILLQLVNGVLGWGKEGHFAICKIAEGYLTEDALAAVKELLPDSAEGDLANVCSW 61
           W   A + L L+ G+LGWG+EGH+ ICKIAE YLTEDAL+ VKELLP  AEGDLA VCSW
Sbjct: 8   WTANAFVFLLLLPGILGWGREGHYMICKIAEKYLTEDALSMVKELLPSYAEGDLAAVCSW 67

Query: 62  ADEVRFH--MRWSSPLHYVDTPDFMCNYKYCRDCHDSVGRKNRCVTGAIYNYTMQLKSGY 119
           ADE+R H    WS  LHYVDTPDF CNYK  RDCHD+   K RCVT AIYNYTMQL+S Y
Sbjct: 68  ADELRAHPDYHWSGALHYVDTPDFFCNYKCSRDCHDNYRHKGRCVTAAIYNYTMQLESAY 127

Query: 120 QDSISVEKYNLTEALMFLSHFIGDVHQPLHVGFIGDKGGNTITVRWYRRKTNLHHVWDTM 179
            +  S  KYNLTEALMFLSHFIGDVHQPLHVGF+GD GGN I V WYRR+TNLHHVWDTM
Sbjct: 128 NEITSEIKYNLTEALMFLSHFIGDVHQPLHVGFVGDIGGNLIKVSWYRRRTNLHHVWDTM 187

Query: 180 IIDSALKTYYDSDIAVMIQSIQRNITDGWSNDVSSWENCANNQTVCPN 227
           IIDSALK +Y S++ +MIQ+IQ NI+D W N+VS+W NC  NQT CPN
Sbjct: 188 IIDSALKRFYHSNLLLMIQAIQNNISDEWHNEVSAWRNCTVNQTTCPN 235

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	244
TAIR|locus:504955531	299	ENDO4 "endonuclease 4" [Arabid	0.926	0.755	0.679	1.7e-91
TAIR|locus:2119612	296	ENDO5 "endonuclease 5" [Arabid	0.930	0.766	0.582	3e-78
TAIR|locus:2119687	294	ENDO3 "endonuclease 3" [Arabid	0.909	0.755	0.602	6.3e-76
TAIR|locus:2199297	290	ENDO2 "AT1G68290" [Arabidopsis	0.889	0.748	0.561	1.2e-67
TAIR|locus:2202114	305	BFN1 "bifunctional nuclease i"	0.897	0.718	0.5	1.8e-62
UNIPROTKB|G5EHU9	306	MGCH7_ch7g611 "Nuclease PA3" [	0.680	0.542	0.327	3.8e-23
GENEDB_PFALCIPARUM|PF14_0117	327	PF14_0117 "hypothetical protei	0.602	0.449	0.226	0.00081
UNIPROTKB|Q8ILX6	327	PF14_0117 "Putative uncharacte	0.602	0.449	0.226	0.00081

TAIR|locus:504955531 ENDO4 "endonuclease 4" [Arabidopsis thaliana (taxid:3702)]

 Score = 912 (326.1 bits), Expect = 1.7e-91, P = 1.7e-91
 Identities = 155/228 (67%), Positives = 190/228 (83%)

Query:     2 WIWRALILLQLVNGVLGWGKEGHFAICKIAEGYLTEDALAAVKELLPDSAEGDLANVCSW 61
             W  R L+L QL+NG L WGKEGH+ +CKIAE Y  E+ +AAVK+LLP SA+GDLA+VCSW
Sbjct:     8 WFARVLVLTQLINGALCWGKEGHYTVCKIAESYFEEETVAAVKKLLPKSADGDLASVCSW 67

Query:    62 ADEVRFHM--RWSSPLHYVDTPDFMCNYKYCRDCHDSVGRKNRCVTGAIYNYTMQLKSGY 119
              DE++ H   RW+SPLHYVDTPD+ CNY+YCRDCHD+   ++RCVTGAI+NYTMQL S  
Sbjct:    68 PDEIKHHWQWRWTSPLHYVDTPDYRCNYEYCRDCHDTHKNQDRCVTGAIFNYTMQLMSAS 127

Query:   120 QDSISVEKYNLTEALMFLSHFIGDVHQPLHVGFIGDKGGNTITVRWYRRKTNLHHVWDTM 179
             ++S ++  YNLTEALMFLSHFIGD+HQPLHVGF+GD+GGNTITVRWYRRKTNLHHVWD M
Sbjct:   128 ENSDTIVHYNLTEALMFLSHFIGDIHQPLHVGFLGDEGGNTITVRWYRRKTNLHHVWDNM 187

Query:   180 IIDSALKTYYDSDIAVMIQSIQRNITDGWSNDVSSWENCANNQTVCPN 227
             II+SALKTYY+  + +MI+++Q N+T+ WSNDV  WE+C  NQT CPN
Sbjct:   188 IIESALKTYYNKSLPLMIEALQANLTNDWSNDVPLWESCQLNQTACPN 235

GO:0003676 "nucleic acid binding" evidence=IEA;ISS

GO:0004519 "endonuclease activity" evidence=IEA;ISS

GO:0005576 "extracellular region" evidence=ISM

GO:0006308 "DNA catabolic process" evidence=IEA;ISS

GO:0016788 "hydrolase activity, acting on ester bonds" evidence=IEA

GO:0000014 "single-stranded DNA specific endodeoxyribonuclease activity" evidence=IDA

GO:0043765 "T/G mismatch-specific endonuclease activity" evidence=IDA

TAIR|locus:2119612 ENDO5 "endonuclease 5" [Arabidopsis thaliana (taxid:3702)]

 Score = 787 (282.1 bits), Expect = 3.0e-78, P = 3.0e-78
 Identities = 134/230 (58%), Positives = 178/230 (77%)

Query:     1 MWIWRALILLQLVNGVLGWGKEGHFAICKIAEGYLTEDALAAVKELLPDSAEGD-LANVC 59
             +WI   L+L  LV+G L WGK+GH+ +CK+AEG+  +D +AAVK+LLP+S +G  LA+ C
Sbjct:     3 LWIVSVLVLTHLVHGALCWGKDGHYTVCKLAEGFFEDDTIAAVKKLLPESVDGGGLADFC 62

Query:    60 SWADEVR--FHMRWSSPLHYVDTPDFMCNYKYCRDCHDSVGRKNRCVTGAIYNYTMQLKS 117
             SW DE++     +W+S LHYV+TP++ CNY+YCRDCHD+   K+ CVTGAI+NYT QL S
Sbjct:    63 SWPDEIKKLSQWQWTSTLHYVNTPEYRCNYEYCRDCHDTHKHKDWCVTGAIFNYTNQLMS 122

Query:   118 GYQDSISVEKYNLTEALMFLSHFIGDVHQPLHVGFIGDKGGNTITVRWYRRKTNLHHVWD 177
               ++S ++  YNLTEAL+FLSH++GDVHQPLH GF+GD GGNTI V WY  K+NLHHVWD
Sbjct:   123 ASENSQNIVHYNLTEALLFLSHYMGDVHQPLHTGFLGDLGGNTIIVNWYHNKSNLHHVWD 182

Query:   178 TMIIDSALKTYYDSDIAVMIQSIQRNITDGWSNDVSSWENCANNQTVCPN 227
              MIIDSAL+TYY+S +  MIQ++Q  + +GWSNDV SW++C  +Q  CPN
Sbjct:   183 NMIIDSALETYYNSSLPHMIQALQAKLKNGWSNDVPSWKSCHFHQKACPN 232

GO:0003676 "nucleic acid binding" evidence=IEA;ISS

GO:0004519 "endonuclease activity" evidence=IEA;ISS

GO:0005576 "extracellular region" evidence=ISM

GO:0006308 "DNA catabolic process" evidence=IEA;ISS

GO:0016788 "hydrolase activity, acting on ester bonds" evidence=IEA

GO:0000014 "single-stranded DNA specific endodeoxyribonuclease activity" evidence=IDA

GO:0043765 "T/G mismatch-specific endonuclease activity" evidence=IDA

GO:0000041 "transition metal ion transport" evidence=RCA

GO:0006826 "iron ion transport" evidence=RCA

GO:0010106 "cellular response to iron ion starvation" evidence=RCA

GO:0010167 "response to nitrate" evidence=RCA

GO:0015706 "nitrate transport" evidence=RCA

GO:0016132 "brassinosteroid biosynthetic process" evidence=RCA

TAIR|locus:2119687 ENDO3 "endonuclease 3" [Arabidopsis thaliana (taxid:3702)]

 Score = 765 (274.4 bits), Expect = 6.3e-76, P = 6.3e-76
 Identities = 138/229 (60%), Positives = 170/229 (74%)

Query:     1 MWIWRALILLQLVNGVLGWGKEGHFAICKIAEGYLTEDALAAVKELLPDSAEGDLANVCS 60
             MWI   L+L QLVNG L WG  GH+A+CKIA+ Y  ED + AVK+LLP+SA G+LA VCS
Sbjct:     7 MWIVSILVLTQLVNGALCWGDAGHYAVCKIAQSYFEEDTVVAVKKLLPESANGELAAVCS 66

Query:    61 WADEVRF--HMRWSSPLHYVDTPDFMCNYKYCRDCHDSVGRKNRCVTGAIYNYTMQLKSG 118
             W DE++     RW+S LH+ DTPD+ CNY+Y RDC      K+ CVTGAI+NYT QL S 
Sbjct:    67 WPDEIKKLPQWRWTSALHFADTPDYKCNYEYSRDCP-----KDWCVTGAIFNYTNQLMST 121

Query:   119 YQDSISVEKYNLTEALMFLSHFIGDVHQPLHVGFIGDKGGNTITVRWYRRKTNLHHVWDT 178
              ++S S+  YNLTEALMFLSH++GD+HQPLH GFIGD GGN I V WY ++TNLH VWD 
Sbjct:   122 SENSQSIVHYNLTEALMFLSHYMGDIHQPLHEGFIGDLGGNKIKVHWYNQETNLHRVWDD 181

Query:   179 MIIDSALKTYYDSDIAVMIQSIQRNITDGWSNDVSSWENCANNQTVCPN 227
             MII+SAL+TYY+S +  MI  +Q  + +GWSNDV SWE+C  NQT CPN
Sbjct:   182 MIIESALETYYNSSLPRMIHELQAKLKNGWSNDVPSWESCQLNQTACPN 230

GO:0003676 "nucleic acid binding" evidence=IEA;ISS

GO:0004519 "endonuclease activity" evidence=IEA;ISS

GO:0005576 "extracellular region" evidence=ISM

GO:0006308 "DNA catabolic process" evidence=IEA;ISS

GO:0016788 "hydrolase activity, acting on ester bonds" evidence=IEA

GO:0000014 "single-stranded DNA specific endodeoxyribonuclease activity" evidence=IDA

GO:0043765 "T/G mismatch-specific endonuclease activity" evidence=IDA

GO:0009827 "plant-type cell wall modification" evidence=RCA

GO:0009860 "pollen tube growth" evidence=RCA

GO:0048441 "petal development" evidence=RCA

GO:0048443 "stamen development" evidence=RCA

GO:0048481 "ovule development" evidence=RCA

TAIR|locus:2199297 ENDO2 "AT1G68290" [Arabidopsis thaliana (taxid:3702)]

 Score = 687 (246.9 bits), Expect = 1.2e-67, P = 1.2e-67
 Identities = 123/219 (56%), Positives = 156/219 (71%)

Query:     9 LLQLVNGVLGWGKEGHFAICKIAEGYLTEDALAAVKELLPDSAEGDLANVCSWADEVRFH 68
             LL     + GWGKEGH  ICKIA+  L E A  AVKELLP+SAEGDL+++C WAD V+F 
Sbjct:    18 LLYAAPNIHGWGKEGHEIICKIAQTRLDETAAKAVKELLPESAEGDLSSLCLWADRVKFR 77

Query:    69 MRWSSPLHYVDTPDFMCNYKYCRDCHDSVGRKNRCVTGAIYNYTMQLKSGYQDSISVEKY 128
               WSSPLHY++TPD  C+Y+Y RDC D  G K RCV GAIYNYT QL S    + S  +Y
Sbjct:    78 YHWSSPLHYINTPD-ACSYQYNRDCKDESGEKGRCVAGAIYNYTTQLLSYKTAASSQSQY 136

Query:   129 NLTEALMFLSHFIGDVHQPLHVGFIGDKGGNTITVRWYRRKTNLHHVWDTMIIDSALKTY 188
             NLTEAL+F+SHF+GD+HQPLHV +  DKGGNTI V WY RK NLHH+WD+ II++A    
Sbjct:   137 NLTEALLFVSHFMGDIHQPLHVSYASDKGGNTIEVHWYTRKANLHHIWDSNIIETAEADL 196

Query:   189 YDSDIAVMIQSIQRNITDGWSNDVSSWENCANNQTVCPN 227
             Y+S +  M+ ++++NIT  W++ V  WE C   +T CP+
Sbjct:   197 YNSALEGMVDALKKNITTEWADQVKRWETCTK-KTACPD 234

GO:0003676 "nucleic acid binding" evidence=ISS

GO:0004519 "endonuclease activity" evidence=ISS;IDA

GO:0005576 "extracellular region" evidence=ISM

GO:0006308 "DNA catabolic process" evidence=ISS

GO:0000014 "single-stranded DNA specific endodeoxyribonuclease activity" evidence=IDA

GO:0043765 "T/G mismatch-specific endonuclease activity" evidence=IDA

TAIR|locus:2202114 BFN1 "bifunctional nuclease i" [Arabidopsis thaliana (taxid:3702)]

 Score = 638 (229.6 bits), Expect = 1.8e-62, P = 1.8e-62
 Identities = 112/224 (50%), Positives = 157/224 (70%)

Query:     7 LILLQLVNGVLGWGKEGHFAICKIAEGYLTEDALAAVKELLPDSAEGDLANVCSWADEVR 66
             +++L  V+ V  W KEGH   C+IA+  L       V+ LLPD  +GDL+ +C W D++R
Sbjct:    17 ILILCSVSSVRSWSKEGHILTCRIAQNLLEAGPAHVVENLLPDYVKGDLSALCVWPDQIR 76

Query:    67 --FHMRWSSPLHYVDTPDFMCNYKYCRDCHDSVGRKNRCVTGAIYNYTMQLKSGYQDSIS 124
               +  RW+S LHY+DTPD  C+Y+Y RDCHD  G K+ CV GAI N+T QL+  Y +  S
Sbjct:    77 HWYKYRWTSHLHYIDTPDQACSYEYSRDCHDQHGLKDMCVDGAIQNFTSQLQH-YGEGTS 135

Query:   125 VEKYNLTEALMFLSHFIGDVHQPLHVGFIGDKGGNTITVRWYRRKTNLHHVWDTMIIDSA 184
               +YN+TEAL+FLSHF+GD+HQP+HVGF  D+GGNTI +RWY+ K+NLHHVWD  II +A
Sbjct:   136 DRRYNMTEALLFLSHFMGDIHQPMHVGFTSDEGGNTIDLRWYKHKSNLHHVWDREIILTA 195

Query:   185 LKTYYDSDIAVMIQSIQRNITDG-WSNDVSSWENCANNQTVCPN 227
             LK  YD ++ ++ + +++NIT+G W +D+SSW  C N+   CP+
Sbjct:   196 LKENYDKNLDLLQEDLEKNITNGLWHDDLSSWTEC-NDLIACPH 238

GO:0003676 "nucleic acid binding" evidence=IEA;ISS

GO:0004519 "endonuclease activity" evidence=IEA

GO:0005576 "extracellular region" evidence=ISM

GO:0006308 "DNA catabolic process" evidence=ISS

GO:0016788 "hydrolase activity, acting on ester bonds" evidence=IEA

GO:0000014 "single-stranded DNA specific endodeoxyribonuclease activity" evidence=IDA

GO:0010150 "leaf senescence" evidence=IEP

GO:0016891 "endoribonuclease activity, producing 5'-phosphomonoesters" evidence=IDA

GO:0043765 "T/G mismatch-specific endonuclease activity" evidence=IDA

GO:0080187 "floral organ senescence" evidence=IEP

UNIPROTKB|G5EHU9 MGCH7_ch7g611 "Nuclease PA3" [Magnaporthe oryzae 70-15 (taxid:242507)]

 Score = 267 (99.0 bits), Expect = 3.8e-23, P = 3.8e-23
 Identities = 60/183 (32%), Positives = 95/183 (51%)

Query:     6 ALILLQLVNGVLGWGKEGHFAICKIAEGYLTEDALAAVKELLPDSAEGDLANVCSWADEV 65
             A ++L  + G L WG  GH  +  +A  ++       ++ LL +  +  LA V +WAD +
Sbjct:     9 APLILSGLPGALAWGSLGHITVAYLASRFVAPQTETYLQRLLRNDTDAYLAGVATWADSI 68

Query:    66 RFHMRW---SSPLHYVDT---PDFMCNYKYCRDCHDSVGRKNRCVTGAIYNYTMQLKSGY 119
             R+  +W   +   H++D    P   C+    RDC D  G    CV  A+ NYT ++    
Sbjct:    69 RY-TKWGHFTGVFHFIDAKDDPPRSCSVDMDRDCKDQ-G----CVVTALQNYTSRM---- 118

Query:   120 QDSISVEKYNLTEALMFLSHFIGDVHQPLHVGFIGDKGGNTITVRWYRRKTNLHHVWDTM 179
              D   + ++   +A  F+ HF+GD+HQPLH   +  +GGN I V W+ R+ NLH VWD+ 
Sbjct:   119 MDLDRLREWERAQAAKFVVHFVGDMHQPLHDEDVA-RGGNGIHVLWHGREYNLHSVWDSA 177

Query:   180 IID 182
             I +
Sbjct:   178 IAE 180

GO:0005575 "cellular_component" evidence=ND

GENEDB_PFALCIPARUM|PF14_0117 PF14_0117 "hypothetical protein, conserved" [Plasmodium falciparum (taxid:5833)]

 Score = 110 (43.8 bits), Expect = 0.00081, P = 0.00081
 Identities = 37/163 (22%), Positives = 68/163 (41%)

Query:     3 IWRALILLQLVNGVLGWGKEGHFAICKIAEGYLTEDALAAVKELLPDSAEGDLAN--VCS 60
             I+ +L++L       GW  EGH  +  IA  +L +D    +  +  +  E +  N  V  
Sbjct:     7 IFCSLLILIFTKRCSGWCDEGHMLVSAIAYNFLNDDEKTVLDHIFKNYKEDNDFNDPVLG 66

Query:    61 --WADEVR-FHMRWSSPLHYVDTPDFMCNYKYCRDCHDSVGRKNRCVTGAIYNYTMQ--- 114
               W D ++ F+  + + +  +D  + M  + Y    ++    K        Y  T     
Sbjct:    67 SVWPDHIKYFNYNYPNKMRRIDGLELMNKWHYVNIPYNPTNIKLNMFQKEYYKRTDNAIT 126

Query:   115 -LKSGYQDSISVEK-------YNLTEALMFLSHFIGDVHQPLH 149
              LKS ++   +V+K       ++    + +  H  GD+HQPLH
Sbjct:   127 ILKSIFKSLKNVKKKENHGTFFSYNFLIRYFIHIFGDIHQPLH 169

GO:0005575 "cellular_component" evidence=ND

GO:0003674 "molecular_function" evidence=ND

GO:0008150 "biological_process" evidence=ND

UNIPROTKB|Q8ILX6 PF14_0117 "Putative uncharacterized protein" [Plasmodium falciparum 3D7 (taxid:36329)]

 Score = 110 (43.8 bits), Expect = 0.00081, P = 0.00081
 Identities = 37/163 (22%), Positives = 68/163 (41%)

Query:     3 IWRALILLQLVNGVLGWGKEGHFAICKIAEGYLTEDALAAVKELLPDSAEGDLAN--VCS 60
             I+ +L++L       GW  EGH  +  IA  +L +D    +  +  +  E +  N  V  
Sbjct:     7 IFCSLLILIFTKRCSGWCDEGHMLVSAIAYNFLNDDEKTVLDHIFKNYKEDNDFNDPVLG 66

Query:    61 --WADEVR-FHMRWSSPLHYVDTPDFMCNYKYCRDCHDSVGRKNRCVTGAIYNYTMQ--- 114
               W D ++ F+  + + +  +D  + M  + Y    ++    K        Y  T     
Sbjct:    67 SVWPDHIKYFNYNYPNKMRRIDGLELMNKWHYVNIPYNPTNIKLNMFQKEYYKRTDNAIT 126

Query:   115 -LKSGYQDSISVEK-------YNLTEALMFLSHFIGDVHQPLH 149
              LKS ++   +V+K       ++    + +  H  GD+HQPLH
Sbjct:   127 ILKSIFKSLKNVKKKENHGTFFSYNFLIRYFIHIFGDIHQPLH 169


Parameters:
  V=100
  filter=SEG
  E=0.001

  ctxfactor=1.00

  Query                        -----  As Used  -----    -----  Computed  ----
  Frame  MatID Matrix name     Lambda    K       H      Lambda    K       H
   +0      0   BLOSUM62        0.323   0.137   0.460    same    same    same
               Q=9,R=2         0.244   0.0300  0.180     n/a     n/a     n/a

  Query
  Frame  MatID  Length  Eff.Length     E     S W   T  X   E2     S2
   +0      0      244       244   0.00098  113 3  11 22  0.40    33
                                                     32  0.45    36


Statistics:

  Database:  /share/blast/go-seqdb.fasta
   Title:  go_20130330-seqdb.fasta
   Posted:  5:47:42 AM PDT Apr 1, 2013
   Created:  5:47:42 AM PDT Apr 1, 2013
   Format:  XDF-1
   # of letters in database:  169,044,731
   # of sequences in database:  368,745
   # of database sequences satisfying E:  8
  No. of states in DFA:  625 (66 KB)
  Total size of DFA:  247 KB (2130 KB)
  Time to generate neighborhood:  0.00u 0.00s 0.00t   Elapsed:  00:00:00
  No. of threads or processors used:  24
  Search cpu time:  20.39u 0.12s 20.51t   Elapsed:  00:00:01
  Total cpu time:  20.40u 0.12s 20.52t   Elapsed:  00:00:01
  Start:  Thu May  9 18:28:34 2013   End:  Thu May  9 18:28:35 2013

GO:0003674 "molecular_function" evidence=ND

GO:0005575 "cellular_component" evidence=ND

GO:0008150 "biological_process" evidence=ND

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
F4JJL0	ENDO4_ARATH	3, ., 1, ., 3, 0, ., 1	0.6798	0.9262	0.7558	yes	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

Prediction Level	EC number	Confidence of Prediction
3rd Layer	3.1.30.1	LOW CONFIDENCE prediction!
3rd Layer	3.1.30	LOW CONFIDENCE prediction!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input: estExt_fgenesh4_pg.C_LG_XI0310 hypothetical protein (297 aa) (Populus trichocarpa)

Predicted Functional Partners:

Sorry, there are no predicted associations at the current settings.

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	244
pfam02265	251	pfam02265, S1-P1_nuclease, S1/P1 Nuclease	2e-82
cd11010	249	cd11010, S1-P1_nuclease, S1/P1 nucleases and relat	3e-61
cd10981	238	cd10981, ZnPC_S1P1, Zinc dependent phospholipase C	2e-07

>gnl|CDD|216953 pfam02265, S1-P1_nuclease, S1/P1 Nuclease

 Score =  246 bits (630), Expect = 2e-82
 Identities = 96/205 (46%), Positives = 120/205 (58%), Gaps = 13/205 (6%)

Query: 19  WGKEGHFAICKIAEGYLTEDALAAVKELLPDSAEGDLANVCSWADEVRF--HMRWSSPLH 76
           WGKEGH  + +IAE +L+  A  AV+ LLP   +GDLA V +WAD++R     RW+SP H
Sbjct: 1   WGKEGHRTVAEIAERHLSPKARKAVQRLLPGL-DGDLAQVATWADDIRSDGKYRWTSPWH 59

Query: 77  YVDTPDFMCNYKYCRDCHDSV-GRKNRCVTGAIYNYTMQLKSGYQDSISVEKYNLTEALM 135
           Y+DTPD        RDCHD+    K  CV  AI NYT QLK     S         EAL 
Sbjct: 60  YIDTPD----NPPPRDCHDAEDCPKEGCVVSAINNYTSQLKDTTASS-----DQRAEALK 110

Query: 136 FLSHFIGDVHQPLHVGFIGDKGGNTITVRWYRRKTNLHHVWDTMIIDSALKTYYDSDIAV 195
           FL HF+GD+HQPLH G  GD+GGN I VRW+ RKTNLH VWD+ II++AL  YY S ++ 
Sbjct: 111 FLVHFVGDIHQPLHAGRAGDRGGNDIKVRWFGRKTNLHSVWDSGIIETALGDYYRSSLSE 170

Query: 196 MIQSIQRNITDGWSNDVSSWENCAN 220
              +++  IT G   D         
Sbjct: 171 WADALEATITFGEYKDAWEPGTTPL 195

This family contains both S1 and P1 nucleases (EC:3.1.30.1) which cleave RNA and single stranded DNA with no base specificity. Length = 251

>gnl|CDD|211382 cd11010, S1-P1_nuclease, S1/P1 nucleases and related enzymes

 Score =  192 bits (489), Expect = 3e-61
 Identities = 80/196 (40%), Positives = 102/196 (52%), Gaps = 13/196 (6%)

Query: 19  WGKEGHFAICKIAEGYLTEDALAAVKELLPDSAEGDLANVCSWADEVRF--HMRWSSPLH 76
           WG EGH  + +IAE YLT  A  AV  LL   +   LA   +WAD++R     +W++P H
Sbjct: 1   WGAEGHRIVAEIAEQYLTPKARKAVDRLLGGLSGESLAEAATWADDIRSDPAYKWTAPWH 60

Query: 77  YVDTPDFMCNYKYCRDCHDSVGRKNRCVTGAIYNYTMQLKSGYQDSISVEKYNLTEALMF 136
           YV+ PD  C +   RDC         CV  AI NYT +LK               EAL F
Sbjct: 61  YVNIPDNPCKFYDERDC-----PPGGCVVSAIKNYTARLKDPSLS-----DAERAEALKF 110

Query: 137 LSHFIGDVHQPLHVGFIGDKGGNTITVR-WYRRKTNLHHVWDTMIIDSALKTYYDSDIAV 195
           L HF+GD+HQPLHVG   D GGN   V  W+ RKTNLH VWD+ +ID A  +Y +   A+
Sbjct: 111 LIHFVGDIHQPLHVGSREDGGGNDGDVGGWFGRKTNLHSVWDSGLIDKAKGSYTELAAAL 170

Query: 196 MIQSIQRNITDGWSND 211
           +   +   I  G    
Sbjct: 171 LAALLAEAIETGLEEA 186

This family summarizes both S1 and P1 nucleases (EC:3.1.30.1) which cleave RNA and single stranded DNA with no base specificity. S1 nuclease is more active on DNA than RNA. Its reaction products are oligonucleotides or single nucleotides with 5' phosphoryl groups. Although its primary substrate is single-stranded, it may also introduce single-stranded breaks in double-stranded DNA or RNA, or DNA-RNA hybrids. It is used as a reagent in nuclease protection assays and in removing single stranded tails from DNA molecules to create blunt ended molecules and opening hairpin loops generated during synthesis of double stranded cDNA. P1 nuclease cleaves its substrate at every position yielding nucleoside 5' monophosphates, and it does not recognize or act on double-stranded DNA. It is useful at removing single stranded strands hanging off the end of double stranded DNA and at completely cleaving melted DNA for simple DNA composition analysis. Length = 249

>gnl|CDD|211380 cd10981, ZnPC_S1P1, Zinc dependent phospholipase C/S1-P1 nuclease

 Score = 50.1 bits (120), Expect = 2e-07
 Identities = 34/177 (19%), Positives = 55/177 (31%), Gaps = 22/177 (12%)

Query: 20  GKEGHFAICKIAEGYL-TEDALAAVKELLPDSAEGDLANVCSWADEVRFHMRWSSPLHYV 78
           G   H  I + A   L  E A      L  +  E  L       D+ R+     +  H +
Sbjct: 1   GFGTHHKIARDAVFTLPPELAEFWSDLLKRNIDE--LLEGAVAPDKRRYDDDGEAQNHVL 58

Query: 79  DT---PDFMCNYKYCRDCHDSVGRKNRCVTGAIYNYTMQLKSGYQDSISVEKYNLTEALM 135
           D     D   +                     I  +  +L   ++     +  ++  A  
Sbjct: 59  DVDDYGDSALDKYGEDTL-----GYWGGAPWQIQEWYQRLVDAFRRK---DWKDIAFAAG 110

Query: 136 FLSHFIGDVHQPLHVGFIGDKGGNTITVRWYRRKTNLHHVWDTMIIDSALKTYYDSD 192
            LSH+IGD H PLH                   +  +H  W+T I +   + Y  +D
Sbjct: 111 VLSHYIGDAHVPLHTT--------QNYNGQLTGQDGIHRAWETRIPELYAELYALTD 159

This model describes both the bacterial and archeal zinc-dependent phospholipase C, a domain found in the alpha toxin of Clostridium perfringens, as well as S1/P1 nucleases, which predominantly act on single-stranded DNA and RNA. Length = 238

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	244
PF02265	252	S1-P1_nuclease: S1/P1 Nuclease; InterPro: IPR00315	100.0
smart00770	241	Zn_dep_PLPC Zinc dependent phospholipase C (alpha	95.5

>PF02265 S1-P1_nuclease: S1/P1 Nuclease; InterPro: IPR003154 This family contains both S1 and P1 nucleases (3

Probab=100.00  E-value=2.2e-52  Score=368.47  Aligned_cols=201  Identities=38%  Similarity=0.741  Sum_probs=151.3

Q ss_pred             CChHHHHHHHHHHHhcCCHHHHHHHHHhCCCCCCCCccccCcccccccc---cCCcccccccccCCC--CCCCccccCcc
Q 026060           19 WGKEGHFAICKIAEGYLTEDALAAVKELLPDSAEGDLANVCSWADEVRF---HMRWSSPLHYVDTPD--FMCNYKYCRDC   93 (244)
Q Consensus        19 Wg~~GH~~Va~IA~~~L~~~a~~~v~~lL~~~~~~~l~~~A~WaD~ir~---~~~~~~~wHyid~p~--~~c~~~~~~dc   93 (244)
                      ||..|||+||+||+++|+|+++++|++||+.....+|+++|+|||+||.   +++++++|||+|+|.  ..|++...++|
T Consensus         1 Wg~~GH~~va~iA~~~L~~~~~~~v~~il~~~~~~~l~~~A~WaD~ir~~~~~~~~~~~wHyi~~~~~~~~~~~~~~~~~   80 (252)
T PF02265_consen    1 WGAEGHRVVAEIAQRHLSPEARKKVDKILGGDSSESLAEAATWADDIRSDPAQYKWTAPWHYINQPDNKYPRDFQPARDC   80 (252)
T ss_dssp             --HHHHHHHHHHHHHHS-HHHHHHHHHHHT--STTTTGGGTTHHHHHHT-STTTGGGGGGG------BTTB----HHHHS
T ss_pred             CCcHHHHHHHHHHHHHCCHHHHHHHHHHhCccccccHHHHHHhHHHhhccccccCcCCCccccCCccccccccccccccC
Confidence            9999999999999999999999999999986556899999999999994   579999999999998  45566666788


Q ss_pred             cccCCCCCCcHHHHHHHHHHHHccCCCCchhhhhhcHHHHHHHHHHHHhhcCCCcc-cccCCCCCCceEEEeeCCcccch
Q 026060           94 HDSVGRKNRCVTGAIYNYTMQLKSGYQDSISVEKYNLTEALMFLSHFIGDVHQPLH-VGFIGDKGGNTITVRWYRRKTNL  172 (244)
Q Consensus        94 ~~~~~~~~~cv~~aI~~~~~~L~~~~~~~~~~~~~~~~~aL~fLvH~vGDiHQPLH-~~~~~D~GGN~i~V~~~g~~~nL  172 (244)
                           ++++|++++|.+++++|++.+.+     ..++.++||||+||||||||||| +++++|+|||+++|.|+|+++||
T Consensus        81 -----~~~~~~~~ai~~~~~~L~~~~~~-----~~~~~~aL~~LvH~vGDiHQPLH~~~~~~D~GGN~~~v~~~g~~~nL  150 (252)
T PF02265_consen   81 -----PNGGCVVSAIKNYTSRLKDTSTS-----KAERAFALKFLVHLVGDIHQPLHTVGRKGDRGGNDIKVKFNGKKTNL  150 (252)
T ss_dssp             ------TT--HHHHHHHHHHHHT-TTS------HHHHHHHHHHHHHHHHHTTSGGGG--H--HHHTTT-EEEETTEEEEH
T ss_pred             -----CCCCcHHHHHHHHHHHHhccCCC-----cHHHHHHHHHHHHHhhhccCccccccccccCCCCeeEEEecCCcCcH
Confidence                 78999999999999999999876     46899999999999999999999 67889999999999999999999


Q ss_pred             hHhhhhhhHhHHhhhcCcchHHHHHHHHHHhhccC----CC-CCccccccccCCCccccccCc
Q 026060          173 HHVWDTMIIDSALKTYYDSDIAVMIQSIQRNITDG----WS-NDVSSWENCANNQTVCPNGGH  230 (244)
Q Consensus       173 H~vWDs~ii~~~~~~~~~~~~~~~~~~l~~~i~~~----~~-~~~~~W~~c~~~~~~c~~~~a  230 (244)
                      |++||+.|+++.....+..+..++++.|..+++..    |. ..+..|+.. +..++|...|.
T Consensus       151 H~~WD~~l~~~~~~~~~~~~~~~~a~~L~~~~~~~~~~~~~~~~~~~Wa~E-S~~la~~~~y~  212 (252)
T PF02265_consen  151 HSVWDSGLINYMIKNKYQSSWQEYADELDRKITKESFKSWQPGDPEDWANE-SHELACNIVYP  212 (252)
T ss_dssp             HHHHHTHHHHHHHS--SHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHH-HHHHHHHTTST
T ss_pred             HHHHHHHHHHhhccccchhhHHHHHHHHHhhccchhhhhhhhhhHHHHHHH-HHHHHHHHHhc
Confidence            99999999998877666677888899988877632    32 245677542 45677776664

1.30.1 from EC) which cleave RNA and single stranded DNA with no base specificity. ; GO: 0003676 nucleic acid binding, 0004519 endonuclease activity, 0006308 DNA catabolic process; PDB: 1AK0_A.

>smart00770 Zn_dep_PLPC Zinc dependent phospholipase C (alpha toxin)

Probab=95.50  E-value=0.073  Score=47.27  Aligned_cols=113  Identities=20%  Similarity=0.156  Sum_probs=62.2

Q ss_pred             HHHHHHHHHHHhcCCHH----HHHHHHHhCCCCCCCCccccCcccccccccCCcccccccccCCCCCCCccccCcccccC
Q 026060           22 EGHFAICKIAEGYLTED----ALAAVKELLPDSAEGDLANVCSWADEVRFHMRWSSPLHYVDTPDFMCNYKYCRDCHDSV   97 (244)
Q Consensus        22 ~GH~~Va~IA~~~L~~~----a~~~v~~lL~~~~~~~l~~~A~WaD~ir~~~~~~~~wHyid~p~~~c~~~~~~dc~~~~   97 (244)
                      .-|.-|..=|...|..+    ....| ++|... -..|..-..|||.-...+.- ...||.|...+ -+|-+.       
T Consensus        38 ~tH~~I~~qAi~iL~nd~~~~~~~~~-~~l~~y-~~~l~~G~~~aD~~~~~~~~-~~~HFydp~~~-~~yL~~-------  106 (241)
T smart00770       38 NTHLFIVNQALEILKNDNNKNEYKLV-EILKKN-YKELKLGSTYADYDNKYYDL-SQDHFYDPDTG-KNYLPG-------  106 (241)
T ss_pred             cHHHHHHHHHHHHHHhcCchhHHHHH-HHHHHH-HHHHHcCCcccccCcccccc-ccccccCCCCC-CCCCCC-------
Confidence            56999999999888654    22211 233211 23567778999986643332 26799886443 232111       


Q ss_pred             CCCCCcHHHHHHHHHHHHccCCCCchhhhhhcHHHHHHHHHHHHhhcCCCcccc
Q 026060           98 GRKNRCVTGAIYNYTMQLKSGYQDSISVEKYNLTEALMFLSHFIGDVHQPLHVG  151 (244)
Q Consensus        98 ~~~~~cv~~aI~~~~~~L~~~~~~~~~~~~~~~~~aL~fLvH~vGDiHQPLH~~  151 (244)
                         ..........+...-.+.-....   ...--+.|-.-.|+++|+-||+|++
T Consensus       107 ---~~~A~~~~~ky~~~A~~~~~~g~---~~~A~~~LG~a~Hy~~D~~~P~Ha~  154 (241)
T smart00770      107 ---FSNAKDTGRKYFKLALNEWKKGN---YKKAFFYLGRACHYLGDLSTPYHAN  154 (241)
T ss_pred             ---CCcHHHHHHHHHHHHHHHHHcCC---HHHHHHHHHHHHHHHHhcCCccccc
Confidence               11233333444433322211110   1112244566789999999999996

This domain conveys a zinc dependent phospholipase C activity (EC 3.1.4.3). It is found in a monomeric phospholipase C of Bacillus cereus as well as in the alpha toxin of Clostridium perfringens and Clostridium bifermentans, which is involved in haemolysis and cell rupture. It is also found in a lecithinase of Listeria monocytogenes, which is involved in breaking the 2-membrane vacuoles that surround the bacterium. Structure information: PDB 1ca1.

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	244
3sng_A	277	X-ray Structure Of Fully Glycosylated Bifunctional		1e-64
4dj4_A	277	X-ray Structure Of Mutant N211d Of Bifunctional Nuc		3e-64
1ak0_A	270	P1 Nuclease In Complex With A Substrate Analog Leng		5e-19

>pdb|3SNG|A Chain A, X-ray Structure Of Fully Glycosylated Bifunctional Nuclease Tbn1 From Solanum Lycopersicum (tomato) Length = 277

Iteration: 1
 Score =  243 bits (619), Expect = 1e-64,   Method: Compositional matrix adjust.
 Identities = 112/205 (54%), Positives = 148/205 (72%), Gaps = 4/205 (1%)
Query: 19  WGKEGHFAICKIAEGYLTEDALAAVKELLPDSAEGDLANVCSWADEVR--FHMRWSSPLH 76
           W KEGH   C+IA+G L ++A  AVK LLP+   GDL+ +C W D+VR  +  +W+SPLH
Sbjct: 1   WSKEGHVMTCRIAQGLLNDEAAHAVKMLLPEYVNGDLSALCVWPDQVRHWYKYKWTSPLH 60
Query: 77  YVDTPDFMCNYKYCRDCHDSVGRKNRCVTGAIYNYTMQLKSGYQDSISVEKYNLTEALMF 136
           ++DTPD  CN+ Y RDCHD  G K+ CV GAI N+T QL S Y++  S  +YN+TEAL+F
Sbjct: 61  FIDTPDKACNFDYERDCHDQHGVKDMCVAGAIQNFTTQL-SHYREGTSDRRYNMTEALLF 119
Query: 137 LSHFIGDVHQPLHVGFIGDKGGNTITVRWYRRKTNLHHVWDTMIIDSALKTYYDSDIAVM 196
           LSHF+GD+HQP+HVGF  D GGN+I +RW+R K+NLHHVWD  II +A K YY  DI ++
Sbjct: 120 LSHFMGDIHQPMHVGFTSDAGGNSIDLRWFRHKSNLHHVWDREIILTAAKDYYAKDINLL 179
Query: 197 IQSIQRNITDG-WSNDVSSWENCAN 220
            + I+ N TDG WS+D++SW  C N
Sbjct: 180 EEDIEGNFTDGIWSDDLASWRECGN 204

>pdb|4DJ4|A Chain A, X-ray Structure Of Mutant N211d Of Bifunctional Nuclease Tbn1 From Solanum Lycopersicum (tomato) Length = 277

Iteration: 1
 Score =  241 bits (614), Expect = 3e-64,   Method: Compositional matrix adjust.
 Identities = 111/205 (54%), Positives = 148/205 (72%), Gaps = 4/205 (1%)
Query: 19  WGKEGHFAICKIAEGYLTEDALAAVKELLPDSAEGDLANVCSWADEVR--FHMRWSSPLH 76
           W KEGH   C+IA+G L ++A  AVK LLP+   GDL+ +C W D+VR  +  +W+SPLH
Sbjct: 1   WSKEGHVMTCRIAQGLLNDEAAHAVKMLLPEYVNGDLSALCVWPDQVRHWYKYKWTSPLH 60
Query: 77  YVDTPDFMCNYKYCRDCHDSVGRKNRCVTGAIYNYTMQLKSGYQDSISVEKYNLTEALMF 136
           ++DTPD  CN+ Y RDCHD  G K+ CV GAI N+T QL S Y++  S  +YN+TEAL+F
Sbjct: 61  FIDTPDKACNFDYERDCHDQHGVKDMCVAGAIQNFTTQL-SHYREGTSDRRYNMTEALLF 119
Query: 137 LSHFIGDVHQPLHVGFIGDKGGNTITVRWYRRKTNLHHVWDTMIIDSALKTYYDSDIAVM 196
           LSHF+GD+HQP+HVGF  D GGN+I +RW+R K+NLHHVWD  II +A K YY  DI ++
Sbjct: 120 LSHFMGDIHQPMHVGFTSDAGGNSIDLRWFRHKSNLHHVWDREIILTAAKDYYAKDINLL 179
Query: 197 IQSIQRNITDG-WSNDVSSWENCAN 220
            + I+ + TDG WS+D++SW  C N
Sbjct: 180 EEDIEGDFTDGIWSDDLASWRECGN 204

>pdb|1AK0|A Chain A, P1 Nuclease In Complex With A Substrate Analog Length = 270

Iteration: 1
 Score = 91.3 bits (225), Expect = 5e-19,   Method: Compositional matrix adjust.
 Identities = 68/194 (35%), Positives = 96/194 (49%), Gaps = 16/194 (8%)
Query: 19  WGKEGHFAICKIAEGYLTEDALAAVKELLPDSAEGDLANVCSWADEVRFHM--RWSSPLH 76
           WG  GH  +  +A+ Y++ +A +  + +L  S+   LA++ SWADE R     +WS+ LH
Sbjct: 1   WGALGHATVAYVAQHYVSPEAASWAQGILGSSSSSYLASIASWADEYRLTSAGKWSASLH 60
Query: 77  YVDT---PDFMCNYKYCRDCHDSVGRKNRCVTGAIYNYTMQLKSGYQDSISVEKYNLTEA 133
           ++D    P   CN  Y RDC  S      C   AI NYT ++        S+   N  EA
Sbjct: 61  FIDAEDNPPTNCNVDYERDCGSS-----GCSISAIANYTQRVSDS-----SLSSENHAEA 110
Query: 134 LMFLSHFIGDVHQPLHVGFIGDKGGNTITVRWYRRKTNLHHVWDTMIIDSALKTYYDSDI 193
           L FL HFIGD+ QPLH       GGN I V +     NLH  WDT +    +  +  SD 
Sbjct: 111 LRFLVHFIGDMTQPLHDEAYA-VGGNKINVTFDGYHDNLHSDWDTYMPQKLIGGHALSDA 169
Query: 194 AVMIQSIQRNITDG 207
               +++ +NI  G
Sbjct: 170 ESWAKTLVQNIESG 183

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	244
3sng_A	277	Nuclease; mainly alpha helical, trinuclear metal c	4e-59
1ak0_A	270	P1 nuclease; endonuclease, reaction mechanism, thi	3e-52
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	2e-04

>3sng_A Nuclease; mainly alpha helical, trinuclear metal centre, 3'-nucleotidase, nucleic acids, mononucleotid cytosol membrane associated; HET: NAG BMA MAN BTB; 2.16A {Solanum lycopersicum} Length = 277

 Score =  187 bits (475), Expect = 4e-59
 Identities = 111/212 (52%), Positives = 147/212 (69%), Gaps = 4/212 (1%)

Query: 19  WGKEGHFAICKIAEGYLTEDALAAVKELLPDSAEGDLANVCSWADEVRF--HMRWSSPLH 76
           W KEGH   C+IA+G L ++A  AVK LLP+   GDL+ +C W D+VR     +W+SPLH
Sbjct: 1   WSKEGHVMTCRIAQGLLNDEAAHAVKMLLPEYVNGDLSALCVWPDQVRHWYKYKWTSPLH 60

Query: 77  YVDTPDFMCNYKYCRDCHDSVGRKNRCVTGAIYNYTMQLKSGYQDSISVEKYNLTEALMF 136
           ++DTPD  CN+ Y RDCHD  G K+ CV GAI N+T QL   Y++  S  +YN+TEAL+F
Sbjct: 61  FIDTPDKACNFDYERDCHDQHGVKDMCVAGAIQNFTTQLSH-YREGTSDRRYNMTEALLF 119

Query: 137 LSHFIGDVHQPLHVGFIGDKGGNTITVRWYRRKTNLHHVWDTMIIDSALKTYYDSDIAVM 196
           LSHF+GD+HQP+HVGF  D GGN+I +RW+R K+NLHHVWD  II +A K YY  DI ++
Sbjct: 120 LSHFMGDIHQPMHVGFTSDAGGNSIDLRWFRHKSNLHHVWDREIILTAAKDYYAKDINLL 179

Query: 197 IQSIQRNITDG-WSNDVSSWENCANNQTVCPN 227
            + I+ N TDG WS+D++SW  C N  +    
Sbjct: 180 EEDIEGNFTDGIWSDDLASWRECGNVFSCVNK 211

>1ak0_A P1 nuclease; endonuclease, reaction mechanism, thiophosphory oligonucleotides, glycosylated protein; HET: NAG ADS THS; 1.80A {Penicillium citrinum} SCOP: a.124.1.2 Length = 270

 Score =  169 bits (428), Expect = 3e-52
 Identities = 68/217 (31%), Positives = 100/217 (46%), Gaps = 19/217 (8%)

Query: 19  WGKEGHFAICKIAEGYLTEDALAAVKELLPDSAEGDLANVCSWADEVRFHM--RWSSPLH 76
           WG  GH  +  +A+ Y++ +A +  + +L  S+   LA++ SWADE R     +WS+ LH
Sbjct: 1   WGALGHATVAYVAQHYVSPEAASWAQGILGSSSSSYLASIASWADEYRLTSAGKWSASLH 60

Query: 77  YVDTPD---FMCNYKYCRDCHDSVGRKNRCVTGAIYNYTMQLKSGYQDSISVEKYNLTEA 133
           ++D  D     CN  Y RDC       + C   AI NYT ++        S+   N  EA
Sbjct: 61  FIDAEDNPPTNCNVDYERDCGS-----SGCSISAIANYTQRVSDS-----SLSSENHAEA 110

Query: 134 LMFLSHFIGDVHQPLHVGFIGDKGGNTITVRWYRRKTNLHHVWDTMIIDSALKTYYDSDI 193
           L FL HFIGD+ QPLH       GGN I V +     NLH  WDT +    +  +  SD 
Sbjct: 111 LRFLVHFIGDMTQPLHDEA-YAVGGNKINVTFDGYHDNLHSDWDTYMPQKLIGGHALSDA 169

Query: 194 AVMIQSIQRNITDG-WSNDVSSWENC--ANNQTVCPN 227
               +++ +NI  G ++     W      +       
Sbjct: 170 ESWAKTLVQNIESGNYTAQAIGWIKGDNISEPITTAT 206

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 41.4 bits (96), Expect = 2e-04
 Identities = 44/278 (15%), Positives = 83/278 (29%), Gaps = 91/278 (32%)

Query: 9   LLQL-------VNGVLGWGKEGHFAICKIAEGYLTEDALAA--VKELLP----------- 48
           LL+L       ++GVLG GK            ++  D   +  V+  +            
Sbjct: 144 LLELRPAKNVLIDGVLGSGKT-----------WVALDVCLSYKVQCKMDFKIFWLNLKNC 192

Query: 49  DSAEGDLA---NVCSWAD---EVRFHMRWSSPLHYVDTPD----FMCNYKYCRDCH---D 95
           +S E  L     +    D     R     +  L            + +  Y   C     
Sbjct: 193 NSPETVLEMLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYEN-CLLVLL 251

Query: 96  SVGRKN-------RC---VTGAIYNYTMQLKSGYQDSISVEKYNLT----EALMFLSHFI 141
           +V            C   +T      T  L +     IS++ +++T    E    L  ++
Sbjct: 252 NVQNAKAWNAFNLSCKILLTTRFKQVTDFLSAATTTHISLDHHSMTLTPDEVKSLLLKYL 311

Query: 142 G-----------DVHQPLHVGFIGDKGGNTITVRW-YRRKTNLHHVWDTMIIDSAL---- 185
                         + P  +  I +   + +   W   +  N   +  T II+S+L    
Sbjct: 312 DCRPQDLPREVLTTN-PRRLSIIAESIRDGLA-TWDNWKHVNCDKL--TTIIESSLNVLE 367

Query: 186 ----KTYYDSDIAVMIQSIQRNITDG-----WSNDVSS 214
               +  +D  ++V   S   +I        W + + S
Sbjct: 368 PAEYRKMFD-RLSVFPPSA--HIPTILLSLIWFDVIKS 402

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	244
3sng_A	277	Nuclease; mainly alpha helical, trinuclear metal c	100.0
1ak0_A	270	P1 nuclease; endonuclease, reaction mechanism, thi	100.0
1ah7_A	245	Phospholipase C; phospholipid hydrolysis, hydrolas	99.96
2wxu_A	370	Phospholipase C; cytolysis, hydrolase, hemolysis,	83.74
1olp_A	370	Alpha-toxin; zinc phospholipase C, GAS gangrene de	83.22

>3sng_A Nuclease; mainly alpha helical, trinuclear metal centre, 3'-nucleotidase, nucleic acids, mononucleotid cytosol membrane associated; HET: NAG BMA MAN BTB; 2.16A {Solanum lycopersicum} PDB: 4dj4_A*

Probab=100.00  E-value=1.1e-62  Score=440.38  Aligned_cols=206  Identities=54%  Similarity=1.077  Sum_probs=188.7

Q ss_pred             CChHHHHHHHHHHHhcCCHHHHHHHHHhCCCCCCCCccccCccccccc--ccCCcccccccccCCCCCCCccccCccccc
Q 026060           19 WGKEGHFAICKIAEGYLTEDALAAVKELLPDSAEGDLANVCSWADEVR--FHMRWSSPLHYVDTPDFMCNYKYCRDCHDS   96 (244)
Q Consensus        19 Wg~~GH~~Va~IA~~~L~~~a~~~v~~lL~~~~~~~l~~~A~WaD~ir--~~~~~~~~wHyid~p~~~c~~~~~~dc~~~   96 (244)
                      ||..||++||+||+++|+|+++++|++||+...+.+|+++|+|||++|  .+++|+++|||+|+|++.|+|+|.|||++.
T Consensus         1 Wg~~GH~~Va~IA~~~L~~~~~~~v~~lL~~~~~~~l~~~a~WaD~ir~~~~~~~~~~wHyid~p~~~c~~~~~rdc~~~   80 (277)
T 3sng_A            1 WSKEGHVMTCRIAQGLLNDEAAHAVKMLLPEYVNGDLSALCVWPDQVRHWYKYKWTSPLHFIDTPDKACNFDYERDCHDQ   80 (277)
T ss_dssp             CCHHHHHHHHHHHHTTCCHHHHHHHHHHSCGGGTTCGGGTTTHHHHHTTSGGGGGGGGGGCCCBCTTTCCCCHHHHCBCT
T ss_pred             CCcHHHHHHHHHHHHHCCHHHHHHHHHHhCcccccCHHHHhhhHhhhcccccccccCcceeecCCCCcCCCcccCCcccc
Confidence            999999999999999999999999999999766789999999999999  578999999999999999999999999765


Q ss_pred             CCCCCCcHHHHHHHHHHHHccCC----CCchhhhhhcHHHHHHHHHHHHhhcCCCcccccCCCCCCceEEEeeCCcccch
Q 026060           97 VGRKNRCVTGAIYNYTMQLKSGY----QDSISVEKYNLTEALMFLSHFIGDVHQPLHVGFIGDKGGNTITVRWYRRKTNL  172 (244)
Q Consensus        97 ~~~~~~cv~~aI~~~~~~L~~~~----~~~~~~~~~~~~~aL~fLvH~vGDiHQPLH~~~~~D~GGN~i~V~~~g~~~nL  172 (244)
                      .+++++||++||++++++|++.+    ++     .+++++|||||+|||||||||||+++.+|+|||+|+|.|+|+++||
T Consensus        81 ~~~~~~cvv~aI~~~t~~L~~~~~~~~~~-----~~~~~~aLkfLvHfvGDiHQPLH~g~~~D~GGN~i~V~~~g~~~NL  155 (277)
T 3sng_A           81 HGVKDMCVAGAIQNFTTQLSHYREGTSDR-----RYNMTEALLFLSHFMGDIHQPMHVGFTSDAGGNSIDLRWFRHKSNL  155 (277)
T ss_dssp             TCCBTCSHHHHHHHHHHHHTTTTTCCCCT-----TCCHHHHHHHHHHHHHHHHSGGGGCBTTTTTTTTCEEEETTEEEEH
T ss_pred             cCCCcchHHHHHHHHHHHHcCCCCcccCC-----hHHHHHHHHHHHHHhccccCCccCCCCcCCCCCeEEEEECCccCch
Confidence            56679999999999999999985    33     5789999999999999999999999999999999999999999999


Q ss_pred             hHhhhhhhHhHHhhhcCcchHHHHHHHHHHhhccC-CCCCccccccccCCCccccccCc
Q 026060          173 HHVWDTMIIDSALKTYYDSDIAVMIQSIQRNITDG-WSNDVSSWENCANNQTVCPNGGH  230 (244)
Q Consensus       173 H~vWDs~ii~~~~~~~~~~~~~~~~~~l~~~i~~~-~~~~~~~W~~c~~~~~~c~~~~a  230 (244)
                      |+|||+.|++++.+.++..+..++++.|.++|+.+ |++++.+|.+|. ++..||..||
T Consensus       156 H~vWDs~ii~~~~~~~~~~~~~~~a~~L~~~i~~~~~~~~~~~w~~~~-~~~~~~~~Wa  213 (277)
T 3sng_A          156 HHVWDREIILTAAKDYYAKDINLLEEDIEGNFTDGIWSDDLASWRECG-NVFSCVNKFA  213 (277)
T ss_dssp             HHHHHTHHHHHHHHHHHTTCHHHHHHHHHHHHHTSTTTTTHHHHHCCC-SHHHHHHHHH
T ss_pred             HHHHHhhhhhhhhccccccCHHHHHHHHHHHhhcccchhHHHHHhhcc-cccCCHHHHH
Confidence            99999999999887777777899999999999886 999999999885 4556666665

>1ak0_A P1 nuclease; endonuclease, reaction mechanism, thiophosphory oligonucleotides, glycosylated protein; HET: NAG ADS THS; 1.80A {Penicillium citrinum} SCOP: a.124.1.2

Probab=100.00  E-value=2e-57  Score=404.48  Aligned_cols=202  Identities=34%  Similarity=0.576  Sum_probs=179.9

Q ss_pred             CChHHHHHHHHHHHhcCCHHHHHHHHHhCCCCCCCCccccCcccccccc--cCCcccccccccCCC---CCCCccccCcc
Q 026060           19 WGKEGHFAICKIAEGYLTEDALAAVKELLPDSAEGDLANVCSWADEVRF--HMRWSSPLHYVDTPD---FMCNYKYCRDC   93 (244)
Q Consensus        19 Wg~~GH~~Va~IA~~~L~~~a~~~v~~lL~~~~~~~l~~~A~WaD~ir~--~~~~~~~wHyid~p~---~~c~~~~~~dc   93 (244)
                      ||.+|||+||+||+++|+|+++++|++||+.+++.+|+++|+|||+||.  .++|+++|||+|+|.   ..|++++.|||
T Consensus         1 Wg~~GH~~va~iA~~~L~~~~~~~v~~lL~~~~~~~l~~~a~WaD~ir~~~~~~~~~~wHyid~~~~p~~~c~~~~~rdc   80 (270)
T 1ak0_A            1 WGALGHATVAYVAQHYVSPEAASWAQGILGSSSSSYLASIASWADEYRLTSAGKWSASLHFIDAEDNPPTNCNVDYERDC   80 (270)
T ss_dssp             CCHHHHHHHHHHHHHHSCHHHHHHHHHHHTCCSTTTTGGGTTHHHHHHTSTTTGGGGGGGCCCCCCBTTTBCCCCHHHHS
T ss_pred             CCcHHHHHHHHHHHHHCCHHHHHHHHHHhCCCCcccHHHHccchhhcccCCCCCccccccCCCCcCCCCcCCCCcccCCC
Confidence            9999999999999999999999999999997766779999999999993  589999999999964   56999999999


Q ss_pred             cccCCCCCCcHHHHHHHHHHHHccCCCCchhhhhhcHHHHHHHHHHHHhhcCCCcccccCCCCCCceEEEeeCCcccchh
Q 026060           94 HDSVGRKNRCVTGAIYNYTMQLKSGYQDSISVEKYNLTEALMFLSHFIGDVHQPLHVGFIGDKGGNTITVRWYRRKTNLH  173 (244)
Q Consensus        94 ~~~~~~~~~cv~~aI~~~~~~L~~~~~~~~~~~~~~~~~aL~fLvH~vGDiHQPLH~~~~~D~GGN~i~V~~~g~~~nLH  173 (244)
                           ++++|+++||++++++|++.+.+     .+++.+|||||+|||||||||||++ .+|+|||+|+|.|+|+++|||
T Consensus        81 -----~~~~cv~~ai~~~~~~L~~~~~s-----~~~~~~aL~fLvH~vGDiHQPLH~~-~~D~GGN~i~V~~~g~~~nLH  149 (270)
T 1ak0_A           81 -----GSSGCSISAIANYTQRVSDSSLS-----SENHAEALRFLVHFIGDMTQPLHDE-AYAVGGNKINVTFDGYHDNLH  149 (270)
T ss_dssp             -----CTTCCHHHHHHHHHHHHTCTTSC-----HHHHHHHHHHHHHHHHHTTSGGGGC-CHHHHTTTCEEEETTEEEEHH
T ss_pred             -----CCcccHHHHHHHHHHHHccCCCC-----HHHHHHHHHHHHHHcccccCcccCc-CcCCCCCeEEEEECCccCccH
Confidence                 67899999999999999998775     5789999999999999999999999 689999999999999999999


Q ss_pred             HhhhhhhHhHHhhhcCcchHHHHHHHHHHhhccC-CCCCccccccccC--CCccccccCcc
Q 026060          174 HVWDTMIIDSALKTYYDSDIAVMIQSIQRNITDG-WSNDVSSWENCAN--NQTVCPNGGHH  231 (244)
Q Consensus       174 ~vWDs~ii~~~~~~~~~~~~~~~~~~l~~~i~~~-~~~~~~~W~~c~~--~~~~c~~~~a~  231 (244)
                      +|||+.|++++.+.++..+...+++.|.++|+.+ |.+++.+|.+|..  ++..|+..||.
T Consensus       150 ~vWDs~i~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~wa~  210 (270)
T 1ak0_A          150 SDWDTYMPQKLIGGHALSDAESWAKTLVQNIESGNYTAQAIGWIKGDNISEPITTATRWAS  210 (270)
T ss_dssp             HHHHTHHHHHHHSCCSHHHHHHHHHHHHHHHHHSTTHHHHHHHHTTCCTTCHHHHHHHHHH
T ss_pred             HHHhccchhhhccccCcchHHHHHHHHHHhcccCCCchhHHHhhcCccccccccCHHHHHH
Confidence            9999999999887777778889999999999877 8888889977642  34455555543

>1ah7_A Phospholipase C; phospholipid hydrolysis, hydrolase; 1.50A {Bacillus cereus} SCOP: a.124.1.1 PDB: 2ffz_A 1p5x_A 1p6d_A* 1p6e_A* 2fgn_A 2huc_A

Probab=99.96  E-value=3.8e-30  Score=225.57  Aligned_cols=139  Identities=17%  Similarity=0.142  Sum_probs=109.4

Q ss_pred             ChHHHHHHHHHHHhcCCHHHHHHHH---HhCCCCCCCCccccCccccccccc-C-CcccccccccCCCCCCCccccCccc
Q 026060           20 GKEGHFAICKIAEGYLTEDALAAVK---ELLPDSAEGDLANVCSWADEVRFH-M-RWSSPLHYVDTPDFMCNYKYCRDCH   94 (244)
Q Consensus        20 g~~GH~~Va~IA~~~L~~~a~~~v~---~lL~~~~~~~l~~~A~WaD~ir~~-~-~~~~~wHyid~p~~~c~~~~~~dc~   94 (244)
                      |..||+.|+++|...|+.+....++   ..+..+ ...|...|+|||+ |.. + +|+++|||+|+|.+ |+|.+.++|.
T Consensus        10 ~~~tH~~I~~~A~~~L~~~~~~~~~~~~~~~~~w-~D~i~~~~~w~D~-k~~~~~~~~~~~Hy~d~~~~-~~~~~~~~~~   86 (245)
T 1ah7_A           10 GVNSHLWIVNRAIDIMSRNTTLVKQDRVAQLNEW-RTELENGIYAADY-ENPYYDNSTFASHFYDPDNG-KTYIPFAKQA   86 (245)
T ss_dssp             GGCHHHHHHHHHHHHHHHCCSSCCHHHHHHHHHT-HHHHHHHHHHTTT-STTTTTTTTCGGGCCBTTTT-BCSSTTCCCH
T ss_pred             CCcHHHHHHHHHHHHhccccchHHHHHHHHHHhC-HHHHHhcCcCCCc-ccccccccCCCcccccCCCC-CCCCCCCCCc
Confidence            6789999999999999766421111   112211 2356667888888 733 3 89999999999864 9999999993


Q ss_pred             ccCCCCCCcHHHHHHHHHHHHccCCCCchhhhhhcHHHHHHHHHHHHhhcCCCcccccCCCCCCceEEEeeCCcccchhH
Q 026060           95 DSVGRKNRCVTGAIYNYTMQLKSGYQDSISVEKYNLTEALMFLSHFIGDVHQPLHVGFIGDKGGNTITVRWYRRKTNLHH  174 (244)
Q Consensus        95 ~~~~~~~~cv~~aI~~~~~~L~~~~~~~~~~~~~~~~~aL~fLvH~vGDiHQPLH~~~~~D~GGN~i~V~~~g~~~nLH~  174 (244)
                            .+|++.++.+++..+++.+       ..++.++|+||+|||||||||||       |||.+.   +|+.+|||+
T Consensus        87 ------~~~~~~~~~~~~~~l~~~~-------~~~~~~aL~~l~H~vGDiHQPlH-------~gn~~~---~~~~~nlH~  143 (245)
T 1ah7_A           87 ------KETGAKYFKLAGESYKNKD-------MKQAFFYLGLSLHYLGDVNQPMH-------AANFTN---LSYPQGFHS  143 (245)
T ss_dssp             ------HHHHHHHHHHHHHHHHTTC-------HHHHHHHHHHHHHHHHHHTSTTT-------TTTCCT---TSSSTTHHH
T ss_pred             ------chHHHHHHHHHHHHHHcCC-------HHHHHHHHHHHHHHHHhcCCCCC-------CCcccc---CCCCCCchH
Confidence                  2399999999999998864       25899999999999999999999       677776   578899999


Q ss_pred             hhhhhhHhHHh
Q 026060          175 VWDTMIIDSAL  185 (244)
Q Consensus       175 vWDs~ii~~~~  185 (244)
                      +|| .++++..
T Consensus       144 ~WD-~~i~~~~  153 (245)
T 1ah7_A          144 KYE-NFVDTIK  153 (245)
T ss_dssp             HHH-HHHHHHG
T ss_pred             HHH-HHHHHHh
Confidence            999 8888753

>2wxu_A Phospholipase C; cytolysis, hydrolase, hemolysis, membrane binding, virulence gangrene determinant, C2 domain; 1.80A {Clostridium perfringens} PDB: 2wy6_A 2wxt_A 1qm6_A 1qmd_A 1ca1_A 1gyg_A 1kho_A

Probab=83.74  E-value=0.32  Score=44.49  Aligned_cols=124  Identities=16%  Similarity=0.116  Sum_probs=57.7

Q ss_pred             hHHHHHHHHHHHhcCCHH-------HHHHHHHhCCCCCCCCccccCcccccccccCCcccccccccCCCCCCCccccCcc
Q 026060           21 KEGHFAICKIAEGYLTED-------ALAAVKELLPDSAEGDLANVCSWADEVRFHMRWSSPLHYVDTPDFMCNYKYCRDC   93 (244)
Q Consensus        21 ~~GH~~Va~IA~~~L~~~-------a~~~v~~lL~~~~~~~l~~~A~WaD~ir~~~~~~~~wHyid~p~~~c~~~~~~dc   93 (244)
                      ..-|..|+.=|...|...       ..+.-.++|... ...|-.=++|||.=...+. .-.-||.|...+ -++......
T Consensus         8 ~~TH~~I~~qAl~iL~nd~~~~~~~~~k~~~~~L~~y-~~~l~~Gs~~pD~d~k~~~-~f~~Hfydp~~~-~~~~~~~~w   84 (370)
T 2wxu_A            8 TGTHAMIVTQGVSILENDLSKNEPESVRKNLEILKEN-MHELQLGSTYPDYDKNAYD-LYQDHFWDPDID-NNFSKDNSW   84 (370)
T ss_dssp             BSHHHHHHHHHHHHHHHHCCTTSCHHHHHHHHHHHHT-HHHHHHHHHGGGTCTTCCT-TCGGGCCCTTC----------C
T ss_pred             CchHHHHHHHHHHHHhhcCccchhHHHHHHHHHHHHH-HHHHHcCCcccccCCcccc-ccccccccCCCC-CCccccccc
Confidence            456888888887777322       111222222210 1245666899998332221 223488776432 222111000


Q ss_pred             cccCCCCCCcHHHHHHHHHHHHccCCCCchhhhhhcHHHHHHHHHHHHhhcCCCcccc
Q 026060           94 HDSVGRKNRCVTGAIYNYTMQLKSGYQDSISVEKYNLTEALMFLSHFIGDVHQPLHVG  151 (244)
Q Consensus        94 ~~~~~~~~~cv~~aI~~~~~~L~~~~~~~~~~~~~~~~~aL~fLvH~vGDiHQPLH~~  151 (244)
                      -.....+ ....+....+...-.+.-....   ...--+.|--.+|+|+|+.||+|+.
T Consensus        85 ~~~~~~~-~tA~~~~~ky~~~A~~~~~~g~---~~~A~~~LG~a~Hy~~D~~~P~Ha~  138 (370)
T 2wxu_A           85 YLAYSIP-DTGESQIRKFSALARYEWQRGN---YKQATFYLGEAMHYFGDIDTPYHPA  138 (370)
T ss_dssp             TTTBCBC-CCHHHHHHHHHHHHHHHHHTTC---HHHHHHHHHHHHHHHHHHTSSTTTT
T ss_pred             ccccCCC-CcHHHHHHHHHHHHHHHHHcCC---HHHHHHHHHHHHHHhhcCCCCcccc
Confidence            0000000 1233334444443322211110   1223466778899999999999994

>1olp_A Alpha-toxin; zinc phospholipase C, GAS gangrene determinant, membrane binding, calcium binding, hydrolase; 2.5A {Clostridium absonum} SCOP: a.124.1.1 b.12.1.3

Probab=83.22  E-value=0.22  Score=45.63  Aligned_cols=123  Identities=15%  Similarity=0.093  Sum_probs=59.8

Q ss_pred             hHHHHHHHHHHHhcCCHH-------HHHHHHHhCCCCCCCCccccCcccccccccCCcccccccccCCCCCCCccccCcc
Q 026060           21 KEGHFAICKIAEGYLTED-------ALAAVKELLPDSAEGDLANVCSWADEVRFHMRWSSPLHYVDTPDFMCNYKYCRDC   93 (244)
Q Consensus        21 ~~GH~~Va~IA~~~L~~~-------a~~~v~~lL~~~~~~~l~~~A~WaD~ir~~~~~~~~wHyid~p~~~c~~~~~~dc   93 (244)
                      ..-|..|+.=|...|...       ..+.-.++|... -..|-.=++|||.=...+. .-.-||.|...+ -++......
T Consensus         8 ~~TH~~I~~qAl~iL~nd~~~~~~~~~k~~~~~L~~y-~~~l~~Gs~~pD~d~k~~~-~f~~Hfydp~~~-~~~~~~~~w   84 (370)
T 1olp_A            8 TGTHSVIVTQAIEMLKHDLSKDEPEAIRNDLSILEKN-LHKFQLGSTFPDYDPNAYS-LYQDHFWDPDTD-HNFTQDNKW   84 (370)
T ss_dssp             BSHHHHHHHHHHHHHHHHCCTTSCHHHHHHHHHHHHT-HHHHHHHHHGGGGCTTCCT-TCGGGCCBTTTT-BCHHHHSGG
T ss_pred             CchHHHHHHHHHHHHhhcCccchhhHHHHHHHHHHHH-HHHHHcCCcccccCCcccc-ccccccccCCCC-CCccccccc
Confidence            456888888888888332       222222333211 1246666899998332221 223488776433 222110000


Q ss_pred             -cccCCCCCCcHHHHHHHHHHHHccCCCCchhhhhhcHHHHHHHHHHHHhhcCCCcccc
Q 026060           94 -HDSVGRKNRCVTGAIYNYTMQLKSGYQDSISVEKYNLTEALMFLSHFIGDVHQPLHVG  151 (244)
Q Consensus        94 -~~~~~~~~~cv~~aI~~~~~~L~~~~~~~~~~~~~~~~~aL~fLvH~vGDiHQPLH~~  151 (244)
                       -... .+ ....+....+...-.+.-....   ...--+.|--.+|+|+|+.||+|+.
T Consensus        85 ~~~~~-~~-~tA~~~~~ky~~~A~~~~~~g~---~~~A~~~LG~a~Hy~~D~~~P~Ha~  138 (370)
T 1olp_A           85 YLSYA-VP-DNAESQTRKFATLAKNEWDKGN---YEKAAWYLGQGMHYFGDLNTPYHAA  138 (370)
T ss_dssp             GGGGC-CS-CCHHHHHHHHHHHHHHHHHHTC---HHHHHHHHHHHHHHHHHHTSHHHHT
T ss_pred             ccccC-CC-CcHHHHHHHHHHHHHHHHHcCC---HHHHHHHHHHHHHHhhcCCCCcccc
Confidence             0000 01 1233333444443222111110   1223466778899999999999993

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	244
d1ak0a_	264	a.124.1.2 (A:) P1 nuclease {Penicillium citrinum [	3e-54
d1ah7a_	245	a.124.1.1 (A:) Bacterial phosholipase C {Bacillus	7e-32

>d1ak0a_ a.124.1.2 (A:) P1 nuclease {Penicillium citrinum [TaxId: 5077]} Length = 264

class: All alpha proteins
fold: Phospholipase C/P1 nuclease
superfamily: Phospholipase C/P1 nuclease
family: P1 nuclease
domain: P1 nuclease
species: Penicillium citrinum [TaxId: 5077]

 Score =  173 bits (439), Expect = 3e-54
 Identities = 68/217 (31%), Positives = 100/217 (46%), Gaps = 19/217 (8%)

Query: 19  WGKEGHFAICKIAEGYLTEDALAAVKELLPDSAEGDLANVCSWADEVRF--HMRWSSPLH 76
           WG  GH  +  +A+ Y++ +A +  + +L  S+   LA++ SWADE R     +WS+ LH
Sbjct: 1   WGALGHATVAYVAQHYVSPEAASWAQGILGSSSSSYLASIASWADEYRLTSAGKWSASLH 60

Query: 77  YVDTPDFM---CNYKYCRDCHDSVGRKNRCVTGAIYNYTMQLKSGYQDSISVEKYNLTEA 133
           ++D  D     CN  Y RDC       + C   AI NYT ++        S+   N  EA
Sbjct: 61  FIDAEDNPPTNCNVDYERDCGS-----SGCSISAIANYTQRVS-----DSSLSSENHAEA 110

Query: 134 LMFLSHFIGDVHQPLHVGFIGDKGGNTITVRWYRRKTNLHHVWDTMIIDSALKTYYDSDI 193
           L FL HFIGD+ QPLH       GGN I V +     NLH  WDT +    +  +  SD 
Sbjct: 111 LRFLVHFIGDMTQPLHDEAY-AVGGNKINVTFDGYHDNLHSDWDTYMPQKLIGGHALSDA 169

Query: 194 AVMIQSIQRNITDG-WSNDVSSWENC--ANNQTVCPN 227
               +++ +NI  G ++     W      +       
Sbjct: 170 ESWAKTLVQNIESGNYTAQAIGWIKGDNISEPITTAT 206

>d1ah7a_ a.124.1.1 (A:) Bacterial phosholipase C {Bacillus cereus [TaxId: 1396]} Length = 245

class: All alpha proteins
fold: Phospholipase C/P1 nuclease
superfamily: Phospholipase C/P1 nuclease
family: Phospholipase C
domain: Bacterial phosholipase C
species: Bacillus cereus [TaxId: 1396]

 Score =  115 bits (288), Expect = 7e-32
 Identities = 24/199 (12%), Positives = 54/199 (27%), Gaps = 29/199 (14%)

Query: 19  WGKEGHFAICKIAEGYLTEDALAAVKELLP--DSAEGDLANVCSWADEVR-FHMRWSSPL 75
            G   H  I   A   ++ +     ++ +   +    +L N    AD    ++   +   
Sbjct: 9   EGVNSHLWIVNRAIDIMSRNTTLVKQDRVAQLNEWRTELENGIYAADYENPYYDNSTFAS 68

Query: 76  HYVDTPDFMCNYKYCRDCHDSVGRKNRCVTGAIYNYTMQLKSGYQDSISVEKYNLTEALM 135
           H+ D  +    Y                       + +  +S     +    +     L 
Sbjct: 69  HFYDPDN-GKTYIPFAKQ---------AKETGAKYFKLAGESYKNKDMKQAFF----YLG 114

Query: 136 FLSHFIGDVHQPLHVGFIGDKGGNTITVRWYRRKTNLHHVWDTMIIDSALKTYYDSDIAV 195
              H++GDV+QP+H                       H  ++  +     K  Y      
Sbjct: 115 LSLHYLGDVNQPMHAA----------NFTNLSYPQGFHSKYENFVDTI--KDNYKVTDGN 162

Query: 196 MIQSIQRNITDGWSNDVSS 214
              + +    + W +  + 
Sbjct: 163 GYWNWKGTNPEEWIHGAAV 181

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	244
d1ak0a_	264	P1 nuclease {Penicillium citrinum [TaxId: 5077]}	100.0
d1ah7a_	245	Bacterial phosholipase C {Bacillus cereus [TaxId:	99.94
d1ca1a1	249	Alpha-toxin, N-terminal domain {Clostridium perfri	95.85
d1olpa1	249	Alpha-toxin, N-terminal domain {Clostridium absonu	90.09

>d1ak0a_ a.124.1.2 (A:) P1 nuclease {Penicillium citrinum [TaxId: 5077]}

class: All alpha proteins
fold: Phospholipase C/P1 nuclease
superfamily: Phospholipase C/P1 nuclease
family: P1 nuclease
domain: P1 nuclease
species: Penicillium citrinum [TaxId: 5077]

Probab=100.00  E-value=1.6e-56  Score=395.14  Aligned_cols=202  Identities=33%  Similarity=0.563  Sum_probs=177.2

Q ss_pred             CChHHHHHHHHHHHhcCCHHHHHHHHHhCCCCCCCCccccCccccccc--ccCCcccccccccCCC---CCCCccccCcc
Q 026060           19 WGKEGHFAICKIAEGYLTEDALAAVKELLPDSAEGDLANVCSWADEVR--FHMRWSSPLHYVDTPD---FMCNYKYCRDC   93 (244)
Q Consensus        19 Wg~~GH~~Va~IA~~~L~~~a~~~v~~lL~~~~~~~l~~~A~WaD~ir--~~~~~~~~wHyid~p~---~~c~~~~~~dc   93 (244)
                      ||.+|||+||+||+++|+|+++++|++||+..+..+|+++|+|||+||  +.++++.+|||+|+|.   ..|.+.++++|
T Consensus         1 Wg~~GH~~Va~iA~~~L~~~~~~~v~~iL~~~~~~~l~~~a~WaD~ir~~~~~~~~~~wHyvn~p~~~~~~~~~~~~~~~   80 (264)
T d1ak0a_           1 WGALGHATVAYVAQHYVSPEAASWAQGILGSSSSSYLASIASWADEYRLTSAGKWSASLHFIDAEDNPPTNCNVDYERDC   80 (264)
T ss_dssp             CCHHHHHHHHHHHHHHSCHHHHHHHHHHHTCCSTTTTGGGTTHHHHHHTSTTTGGGGGGGCCCCCCBTTTBCCCCHHHHS
T ss_pred             CCcHHHHHHHHHHHHhCCHHHHHHHHHHhCCCCCCCceeeeeChHhhcCCCccchhhccccCCCCCCCCccccccccccC
Confidence            999999999999999999999999999999776778999999999999  5678999999999975   45778888999


Q ss_pred             cccCCCCCCcHHHHHHHHHHHHccCCCCchhhhhhcHHHHHHHHHHHHhhcCCCcccccCCCCCCceEEEeeCCcccchh
Q 026060           94 HDSVGRKNRCVTGAIYNYTMQLKSGYQDSISVEKYNLTEALMFLSHFIGDVHQPLHVGFIGDKGGNTITVRWYRRKTNLH  173 (244)
Q Consensus        94 ~~~~~~~~~cv~~aI~~~~~~L~~~~~~~~~~~~~~~~~aL~fLvH~vGDiHQPLH~~~~~D~GGN~i~V~~~g~~~nLH  173 (244)
                           ++++||++||++++++|++++.+     .+++++|||||+|||||||||||++ +.|+|||+|+|.|+|+++|||
T Consensus        81 -----~~~~~i~~ai~~~~~~l~~~~~s-----~~~~~~aL~~LvHlvGDiHQPLH~~-~~D~GGN~i~V~~~g~~~NLH  149 (264)
T d1ak0a_          81 -----GSSGCSISAIANYTQRVSDSSLS-----SENHAEALRFLVHFIGDMTQPLHDE-AYAVGGNKINVTFDGYHDNLH  149 (264)
T ss_dssp             -----CTTCCHHHHHHHHHHHHTCTTSC-----HHHHHHHHHHHHHHHHHTTSGGGGC-CHHHHTTTCEEEETTEEEEHH
T ss_pred             -----CCCccHHHHHHHHHHHHhcCCCC-----hHHHHHHHHHHHHHHhhcccccccc-CcCCCCCeeEEEECCccCcHH
Confidence                 78999999999999999998776     4689999999999999999999988 789999999999999999999


Q ss_pred             HhhhhhhHhHHhhhcCcchHHHHHHHHHHhhccC-CCCCcccccccc--CCCccccccCcc
Q 026060          174 HVWDTMIIDSALKTYYDSDIAVMIQSIQRNITDG-WSNDVSSWENCA--NNQTVCPNGGHH  231 (244)
Q Consensus       174 ~vWDs~ii~~~~~~~~~~~~~~~~~~l~~~i~~~-~~~~~~~W~~c~--~~~~~c~~~~a~  231 (244)
                      +|||+.|+++++..+..++...+++.+.++|... |.++...|..|.  ..+..|+..||.
T Consensus       150 ~vWDs~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Wa~  210 (264)
T d1ak0a_         150 SDWDTYMPQKLIGGHALSDAESWAKTLVQNIESGNYTAQAIGWIKGDNISEPITTATRWAS  210 (264)
T ss_dssp             HHHHTHHHHHHHSCCSHHHHHHHHHHHHHHHHHSTTHHHHHHHHTTCCTTCHHHHHHHHHH
T ss_pred             HHHhhhHHhhhccccccchHHHHHHHHHHhccccccHHHhhhhhccccccccccCHHHHHH
Confidence            9999999999888777777788999998888765 666677775554  234455666654

>d1ah7a_ a.124.1.1 (A:) Bacterial phosholipase C {Bacillus cereus [TaxId: 1396]}

class: All alpha proteins
fold: Phospholipase C/P1 nuclease
superfamily: Phospholipase C/P1 nuclease
family: Phospholipase C
domain: Bacterial phosholipase C
species: Bacillus cereus [TaxId: 1396]

Probab=99.94  E-value=7e-29  Score=215.71  Aligned_cols=145  Identities=15%  Similarity=0.067  Sum_probs=111.8

Q ss_pred             ccCCCChHHHHHHHHHHHhcCCHHHHHH---HHHhCCCCCCCCccccCcccccccccC-CcccccccccCCCCCCCcccc
Q 026060           15 GVLGWGKEGHFAICKIAEGYLTEDALAA---VKELLPDSAEGDLANVCSWADEVRFHM-RWSSPLHYVDTPDFMCNYKYC   90 (244)
Q Consensus        15 ~a~AWg~~GH~~Va~IA~~~L~~~a~~~---v~~lL~~~~~~~l~~~A~WaD~ir~~~-~~~~~wHyid~p~~~c~~~~~   90 (244)
                      ...+||..||+.|+.+|+.+|++++...   +-++|.. ...+|.+.|+|||++|..+ +++.+|||+|.|.+ +++...
T Consensus         5 ~~~~~g~~tH~~I~~~A~~~L~~d~~~~~~~~~~~l~~-y~~~l~~g~~waD~~~~~~~~~~~~~Hf~~~~~~-~~~~~~   82 (245)
T d1ah7a_           5 DKHKEGVNSHLWIVNRAIDIMSRNTTLVKQDRVAQLNE-WRTELENGIYAADYENPYYDNSTFASHFYDPDNG-KTYIPF   82 (245)
T ss_dssp             SSSCGGGCHHHHHHHHHHHHHHHCCSSCCHHHHHHHHH-THHHHHHHHHHTTTSTTTTTTTTCGGGCCBTTTT-BCSSTT
T ss_pred             CCCCCCCcHHHHHHHHHHHHHhhhhHHHHHHHHHHHHH-HHHHHHhcCcCccccccccccccCCceeeeCCCC-CCcCCC
Confidence            4579999999999999999998875433   3333331 1246899999999999443 57899999996654 666554


Q ss_pred             CcccccCCCCCCcHHHHHHHHHHHHccCCCCchhhhhhcHHHHHHHHHHHHhhcCCCcccccCCCCCCceEEEeeCCccc
Q 026060           91 RDCHDSVGRKNRCVTGAIYNYTMQLKSGYQDSISVEKYNLTEALMFLSHFIGDVHQPLHVGFIGDKGGNTITVRWYRRKT  170 (244)
Q Consensus        91 ~dc~~~~~~~~~cv~~aI~~~~~~L~~~~~~~~~~~~~~~~~aL~fLvH~vGDiHQPLH~~~~~D~GGN~i~V~~~g~~~  170 (244)
                      .+|      ..++++.+++.....+++.+.       .+..++|++++|||||+|||||++.          |.+.|+.+
T Consensus        83 ~~~------~~~~~~~~~~~~~~~~~~~~~-------~~~~~~l~~~~h~~~d~~qP~H~~~----------v~~~~~~~  139 (245)
T d1ah7a_          83 AKQ------AKETGAKYFKLAGESYKNKDM-------KQAFFYLGLSLHYLGDVNQPMHAAN----------FTNLSYPQ  139 (245)
T ss_dssp             CCC------HHHHHHHHHHHHHHHHHTTCH-------HHHHHHHHHHHHHHHHHTSTTTTTT----------CCTTSSST
T ss_pred             CCC------hHHHHHHHHHHHHHHHhcCCH-------HHHHHHHHHHHHHHhhcCCCccccc----------cccCCCCC
Confidence            443      345677788888888877543       2457899999999999999999972          66788999


Q ss_pred             chhHhhhhhhHhHH
Q 026060          171 NLHHVWDTMIIDSA  184 (244)
Q Consensus       171 nLH~vWDs~ii~~~  184 (244)
                      |||++||+.|++..
T Consensus       140 NLH~~WDs~i~~~~  153 (245)
T d1ah7a_         140 GFHSKYENFVDTIK  153 (245)
T ss_dssp             THHHHHHHHHHHHG
T ss_pred             CcHHHHHhhHHHhh
Confidence            99999999998764

>d1ca1a1 a.124.1.1 (A:1-249) Alpha-toxin, N-terminal domain {Clostridium perfringens, different strains [TaxId: 1502]}

class: All alpha proteins
fold: Phospholipase C/P1 nuclease
superfamily: Phospholipase C/P1 nuclease
family: Phospholipase C
domain: Alpha-toxin, N-terminal domain
species: Clostridium perfringens, different strains [TaxId: 1502]

Probab=95.85  E-value=0.0077  Score=50.34  Aligned_cols=140  Identities=14%  Similarity=0.077  Sum_probs=71.8

Q ss_pred             hHHHHHHHHHHHhcCCHH--------HHHHHHHhCCCCCCCCccccCcccccccccCCcccccccccCCCCCCCccccCc
Q 026060           21 KEGHFAICKIAEGYLTED--------ALAAVKELLPDSAEGDLANVCSWADEVRFHMRWSSPLHYVDTPDFMCNYKYCRD   92 (244)
Q Consensus        21 ~~GH~~Va~IA~~~L~~~--------a~~~v~~lL~~~~~~~l~~~A~WaD~ir~~~~~~~~wHyid~p~~~c~~~~~~d   92 (244)
                      ..-|..|+.=|.+.|...        .+..++ +|.+. -..|..-+.|||.-...++ +-..||.|...+ .++.....
T Consensus         8 ~~TH~~i~~qA~~iL~nD~~~~~~~~~~~~~~-~L~~y-~~~~~~G~~~~D~~~~~y~-~f~~HFy~p~~~-k~~~g~~~   83 (249)
T d1ca1a1           8 TGTHAMIVTQGVSILENDLSKNEPESVRKNLE-ILKEN-MHELQLGSTYPDYDKNAYD-LYQDHFWDPDTD-NNFSKDNS   83 (249)
T ss_dssp             BSHHHHHHHHHHHHHHHHCCTTSCHHHHHHHH-HHHHT-HHHHHHHHHGGGTCTTCCT-TCGGGCCCTTTC-SSTTTCSC
T ss_pred             CchHHHHHHHHHHHHHhccchhhHHHHHHHHH-HHHHH-HHHHhcCCcCcccCCccCc-ccccccccCCCC-CCccCccc
Confidence            346999999898876533        122222 22110 1246667899997654443 345699876433 22221100


Q ss_pred             ccccCCCCCCcHHHHHHHHHHHHcc-CCCCchhhhhhcHHHHHHHHHHHHhhcCCCcccccCCCCCCceEEEeeCCcccc
Q 026060           93 CHDSVGRKNRCVTGAIYNYTMQLKS-GYQDSISVEKYNLTEALMFLSHFIGDVHQPLHVGFIGDKGGNTITVRWYRRKTN  171 (244)
Q Consensus        93 c~~~~~~~~~cv~~aI~~~~~~L~~-~~~~~~~~~~~~~~~aL~fLvH~vGDiHQPLH~~~~~D~GGN~i~V~~~g~~~n  171 (244)
                      ..-+ +.-..........|..+-.+ .....    ...--+.|-...|+|+|+.||+|++.            +-....+
T Consensus        84 ~~~~-~~~~~~a~~~~~ky~~~A~~~~~~~~----~~~a~~~LG~a~Hy~~D~~~P~Ha~N------------~t~~~~~  146 (249)
T d1ca1a1          84 WYLA-YSIPDTGESQIRKFSALARYEWQRGN----YKQATFYLGEAMHYFGDIDTPYHPAN------------VTAVDSA  146 (249)
T ss_dssp             CCCS-SCCCCCHHHHHHHHHHHHHHHHHTTC----HHHHHHHHHHHHHHHHHHTSSTTTTT------------CCTTTCT
T ss_pred             cccc-ccccchHHHHHHHHHHHHHHHHHccc----HHHHHHHHHHHHHHHhcCCCcccccc------------ccccCcc
Confidence            0000 01112344444444443222 11111    11223567788999999999999971            1111234


Q ss_pred             hhHhhhhhhH
Q 026060          172 LHHVWDTMII  181 (244)
Q Consensus       172 LH~vWDs~ii  181 (244)
                      -|+..++-+-
T Consensus       147 ~H~~yEn~V~  156 (249)
T d1ca1a1         147 GHVKFETFAE  156 (249)
T ss_dssp             HHHHHHHHHH
T ss_pred             cHHHHHHHHH
Confidence            5888777754

>d1olpa1 a.124.1.1 (A:1-249) Alpha-toxin, N-terminal domain {Clostridium absonum [TaxId: 29369]}

class: All alpha proteins
fold: Phospholipase C/P1 nuclease
superfamily: Phospholipase C/P1 nuclease
family: Phospholipase C
domain: Alpha-toxin, N-terminal domain
species: Clostridium absonum [TaxId: 29369]

Probab=90.09  E-value=0.046  Score=45.45  Aligned_cols=142  Identities=17%  Similarity=0.155  Sum_probs=68.8

Q ss_pred             ChHHHHHHHHHHHhcCC----HHHHHHHH---HhCCCCCCCCccccCcccccccccCCcccccccccCCCCCCCccccCc
Q 026060           20 GKEGHFAICKIAEGYLT----EDALAAVK---ELLPDSAEGDLANVCSWADEVRFHMRWSSPLHYVDTPDFMCNYKYCRD   92 (244)
Q Consensus        20 g~~GH~~Va~IA~~~L~----~~a~~~v~---~lL~~~~~~~l~~~A~WaD~ir~~~~~~~~wHyid~p~~~c~~~~~~d   92 (244)
                      |..-|.-|+.=|...|.    .+....++   ++|.+. ...|..-..|||.=...+. +-.-||.|...+ .++.-..+
T Consensus         7 g~~TH~~I~~qAi~IL~nd~~~~~~~~~~~~~~~l~~~-~~~~~~G~~~aD~d~~~y~-~f~~HFy~pdtg-k~~~g~~~   83 (249)
T d1olpa1           7 GTGTHSVIVTQAIEMLKHDLSKDEPEAIRNDLSILEKN-LHKFQLGSTFPDYDPNAYS-LYQDHFWDPDTD-HNFTQDNK   83 (249)
T ss_dssp             TBSHHHHHHHHHHHHHHHHCCTTSCHHHHHHHHHHHHT-HHHHHHHHHGGGGCTTCCT-TCGGGCCBTTTT-BCHHHHSG
T ss_pred             CcchHHHHHHHHHHHHhccccccHHHHHHHHHHHHHHh-HHHHhcCCcCccCCCcccc-ccccccccCCCC-CCCcCCcc
Confidence            34568889988888873    22222221   223211 1235556789996332221 223488776432 22211110


Q ss_pred             ccccCCCCCCcHHHHHHHHHHHHccCCCCchhhhhhcH-HHHHHHHHHHHhhcCCCcccccCCCCCCceEEEeeCCcccc
Q 026060           93 CHDSVGRKNRCVTGAIYNYTMQLKSGYQDSISVEKYNL-TEALMFLSHFIGDVHQPLHVGFIGDKGGNTITVRWYRRKTN  171 (244)
Q Consensus        93 c~~~~~~~~~cv~~aI~~~~~~L~~~~~~~~~~~~~~~-~~aL~fLvH~vGDiHQPLH~~~~~D~GGN~i~V~~~g~~~n  171 (244)
                      ..... +-..........+...-.+.-...    ..++ -+.|-...|+++|+.||+|++       |..     ....+
T Consensus        84 ~~~~~-~~~~~A~~~~~ky~~~A~~~~~~g----~~~~a~~~LG~a~Hy~~D~~qP~Haa-------N~t-----~v~~~  146 (249)
T d1olpa1          84 WYLSY-AVPDNAESQTRKFATLAKNEWDKG----NYEKAAWYLGQGMHYFGDLNTPYHAA-------NVT-----AVDSP  146 (249)
T ss_dssp             GGGGG-CCSCCHHHHHHHHHHHHHHHHHHT----CHHHHHHHHHHHHHHHHHHTSHHHHT-------TCC-----TTTCH
T ss_pred             ccccc-cCCccHHHHHHHHHHHHHHHHHcc----CHHHHHHHHHhHhHHhhcCCCCcccc-------ccc-----ccccc
Confidence            00000 111234444444444333221111    1222 366778899999999999986       211     11224


Q ss_pred             hhHhhhhhhH
Q 026060          172 LHHVWDTMII  181 (244)
Q Consensus       172 LH~vWDs~ii  181 (244)
                      .|+..++-+-
T Consensus       147 ~H~~yE~yV~  156 (249)
T d1olpa1         147 GHVKFETYAE  156 (249)
T ss_dssp             HHHHHHHHHH
T ss_pred             cHHHHHHHHH
Confidence            5888777663