Citrus Sinensis ID: 026069

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240----
Protein Sequence
MASSSYSSTKALSLVFYITLFCFLSGSVSASRTSPSDVNSKVKLGLYYESLCPYSANFIINYLVKIFEDVDLLSIVDLHLSPWGNAKIRANNSTFDCQHGPSECLLNTVEACAIDSWPELNKHFPFIYCIESLVYEHKYSQWETCFDKLELDPKPIVDCYTSGYGTQLELKYAAETNSLVPPHQYVPWVVVDGQPLYEDYENFISYVCKAYKGNVVPKACSNLFLITNYYGVEQKPVFPVGYNK
Secondary Structure (PSIPRED)
cccccccHHHHHHHHHHHHHHHHHHHcccccccccccccccEEEEEEEEcccHHHHHHHHHHHHHHHHHcccccEEEEEEEEEEccEEEcccccEEEcccHHHHHccHHHHHHHHcccccccccHHHHHHHcccccccccccccHHHccccccccHHHHcccccccHHHHHHHHHHccccccccccEEEEEccEEcHHHHHHHHHHHHHHcccccccccccccccccccccccccccccccccc
Secondary Structure Prediction (SSPRO)
ccccccHHHHHHHHHHHHHHHHHHHHHHccccccccccccccEEEEEEEcccccHHHHHHHHHHHHHHHcccccEEEEEEEEccccEEEccccEEEEcccHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHcccccHHHHHHHHHHccccHHHHHHHcccccHHHHHHHHHHHHHcccccccEEEEEEEcccccHHHHHHHHHHHHHHHcccccccHccHHHHHccccccEccccccEEEcc
Coil and Loop (DISEMBL)
masssysstKALSLVFYITLFCFLsgsvsasrtspsdvnskvKLGLYYeslcpysaNFIINYLVKIFEDVDLLSIVdlhlspwgnakirannstfdcqhgpsecllntveacaidswpelnkhfpfIYCIESLvyehkysqwetcfdkleldpkpivdcytsgygtqLELKYAAetnslvpphqyvpwvvvdgqplyedYENFISYVCKAykgnvvpkacSNLFLITNyygveqkpvfpvgynk
Flexible Loop (DISEMBL)
masssysstKALSLVFYITLFCFLSGsvsasrtspsdvnsKVKLGLYYESLCPYSANFIINYLVKIFEDVDLLSIVDLHLSPWGNAKIRANNSTFDCQHGPSECLLNTVEACAIDSWPELNKHFPFIYCIESLVYEHKYSQWETCFDKLELDPKPIVDCYTSGYGTQLELKYAAETNSLVPPHQYVPWVVVDGQPLYEDYENFISYVCKAYKGNVVPKACSNLFLITNyygveqkpvfpvgynk
Low Complexity Region (SEG)
MAsssyssTKALSLVFYITLFCFLSGSVSASRTSPSDVNSKVKLGLYYESLCPYSANFIINYLVKIFEDVDLLSIVDLHLSPWGNAKIRANNSTFDCQHGPSECLLNTVEACAIDSWPELNKHFPFIYCIESLVYEHKYSQWETCFDKLELDPKPIVDCYTSGYGTQLELKYAAETNSLVPPHQYVPWVVVDGQPLYEDYENFISYVCKAYKGNVVPKACSNLFLITNYYGVEQKPVFPVGYNK
Disordered region (IsUnstruct)
**********ALSLVFYITLFCFLSGSV***********SKVKLGLYYESLCPYSANFIINYLVKIFEDVDLLSIVDLHLSPWGNAKIRANNSTFDCQHGPSECLLNTVEACAIDSWPELNKHFPFIYCIESLVYEHKYSQWETCFDKLELDPKPIVDCYTSGYGTQLELKYAAETNSLVPPHQYVPWVVVDGQPLYEDYENFISYVCKAYKGNVVPKACSNLFLITNYYGVEQKPVFPV****
Disordered Region (DISOPRED)
***********LSLVFYITLFCFLSGS*************KVKLGLYYESLCPYSANFIINYLVKIFEDVDLLSIVDLHLSPWGNAKIRANNSTFDCQHGPSECLLNTVEACAIDSWPELNKHFPFIYCIESLVYEHKYSQWETCFDKLELDPKPI***********LELKYAAETNSLVPPHQYVPWVVVDGQPLYEDYENFISYVCKAYKGNVVPKACSN***************FPVGYN*
Disordered Region (DISEMBL)
*********KALSLVFYITLFCFLSGS***********NSKVKLGLYYESLCPYSANFIINYLVKIFEDVDLLSIVDLHLSPWGNAKIRANNSTFDCQHGPSECLLNTVEACAIDSWPELNKHFPFIYCIESLVYEHKYSQWETCFDKLELDPKPIVDCYTSGYGTQLELKYAAETNSLVPPHQYVPWVVVDGQPLYEDYENFISYVCKAYKGNVVPKACSNLFLITNYYGVEQKPVFPVGYNK
Disordered Region (DISPRO)
****SYSSTKALSLVFYITLFCFLSGSVSASRTS***VNSKVKLGLYYESLCPYSANFIINYLVKIFEDVDLLSIVDLHLSPWGNAKIRANNSTFDCQHGPSECLLNTVEACAIDSWPELNKHFPFIYCIESLVYEHKYSQWETCFDKLELDPKPIVDCYTSGYGTQLELKYAAETNSLVPPHQYVPWVVVDGQPLYEDYENFISYVCKAYKGNVVPKACSNLFLITNYYGVEQKPVFPVGYNK
Transmembrane Helix (TMHMM)
iiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
iiiiiiiiiiHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
SSSSSSSSSSSSSSSSSSSSSiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP NN Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Coiled Coils (COILS)
MASSSYSSTKALSLVFYITLFCFLSGSVSASRTSPSDVNSKVKLGLYYESLCPYSANFIINYLVKIFEDVDLLSIVDLHLSPWGNAKIRANNSTFDCQHGPSECLLNTVEACAIDSWPELNKHFPFIYCIESLVYEHKYSQWETCFDKLELDPKPIVDCYTSGYGTQLELKYAAETNSLVPPHQYVPWVVVDGQPLYEDYENFISYVCKAYKGNVVPKACSNLFLITNYYGVEQKPVFPVGYNK
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	244	2.2.26 [Sep-21-2011]
Q9ESY9	248	Gamma-interferon-inducibl	yes	no	0.721	0.709	0.376	2e-25
Q499T2	248	Gamma-interferon-inducibl	yes	no	0.721	0.709	0.376	8e-25
A6QPN6	244	Gamma-interferon-inducibl	yes	no	0.663	0.663	0.364	2e-23
P13284	250	Gamma-interferon-inducibl	yes	no	0.713	0.696	0.361	7e-23
B3SP85	246	Gamma-interferon-inducibl	yes	no	0.766	0.760	0.362	2e-22
O17861	277	GILT-like protein F37H8.5	yes	no	0.709	0.624	0.324	5e-18
P34276	323	GILT-like protein C02D5.2	no	no	0.790	0.597	0.273	5e-17
Q61Z40	220	GILT-like protein CBG0328	N/A	no	0.790	0.877	0.200	1e-10
Q23570	218	GILT-like protein ZK669.3	no	no	0.491	0.550	0.260	2e-10

>sp|Q9ESY9|GILT_MOUSE Gamma-interferon-inducible lysosomal thiol reductase OS=Mus musculus GN=Ifi30 PE=1 SV=3

 Score =  115 bits (289), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 70/186 (37%), Positives = 106/186 (56%), Gaps = 10/186 (5%)

Query: 42  VKLGLYYESLCPYSANFIINYLVKIFEDVDLLSIVDLHLSPWGNAKIRANNST--FDCQH 99
           V++ LYYESLC     F++  L   +  + ++ I+++ L P+GNA+ R  + T  F CQH
Sbjct: 59  VRVSLYYESLCGACRYFLVRDLFPTW--LMVMEIMNITLVPYGNAQERNVSGTWEFTCQH 116

Query: 100 GPSECLLNTVEACAIDSWPELNKHFPFIYCIESLVYEHKYSQWETCFD--KLELDPKPIV 157
           G  EC LN VEAC +D   E    F  I C+E +  +    +   C      E+ P+ I+
Sbjct: 117 GELECRLNMVEACLLDKL-EKEAAFLTIVCMEEM--DDMEKKLGPCLQVYAPEVSPESIM 173

Query: 158 DCYTSGYGTQLELKYAAETNSLVPPHQYVPWVVVDGQPLYEDYENFISYVCKAYKGNVVP 217
           +C T   GTQL  + A  T++L PPH+YVPWV+V+ +PL +D    +S VC+ Y+G   P
Sbjct: 174 ECATGKRGTQLMHENAQLTDALHPPHEYVPWVLVNEKPL-KDPSELLSIVCQLYQGTEKP 232

Query: 218 KACSNL 223
             CS++
Sbjct: 233 DICSSI 238

Lysosomal thiol reductase that can reduce protein disulfide bonds. May facilitate the complete unfolding of proteins destined for lysosomal degradation. Plays an important role in antigen processing. Facilitates the generation of MHC class II-restricted epitodes from disulfide bond-containing antigen by the endocytic reduction of disulfide bonds. Facilitates also MHC class I-restricted recognition of exogenous antigens containing disulfide bonds by CD8+ T-cells or crosspresentation.
Mus musculus (taxid: 10090)
EC: 1EC: .EC: 8EC: .EC: -EC: .EC: -

>sp|Q499T2|GILT_RAT Gamma-interferon-inducible lysosomal thiol reductase OS=Rattus norvegicus GN=Ifi30 PE=2 SV=1

 Score =  114 bits (284), Expect = 8e-25,   Method: Compositional matrix adjust.
 Identities = 70/186 (37%), Positives = 104/186 (55%), Gaps = 10/186 (5%)

Query: 42  VKLGLYYESLCPYSANFIINYLVKIFEDVDLLSIVDLHLSPWGNAKIRANNST--FDCQH 99
           V + LYYESLC     F++  L   +  + ++ I+++ L P+GNA+ R  + T  F CQH
Sbjct: 59  VNVSLYYESLCGACRYFLVRNLFPTW--LMVMEIMNITLVPYGNAQERNVSGTWEFTCQH 116

Query: 100 GPSECLLNTVEACAIDSWPELNKHFPFIYCIESLVYEHKYSQWETCFDKL--ELDPKPIV 157
           G  EC LN VEAC +D   E    F  I C+E +  E    +   C      E+ P+ I+
Sbjct: 117 GELECKLNKVEACLLDKL-EKEAAFLTIVCMEEM--EDMEKKLGPCLQLYVPEVSPESIM 173

Query: 158 DCYTSGYGTQLELKYAAETNSLVPPHQYVPWVVVDGQPLYEDYENFISYVCKAYKGNVVP 217
           +C T   GT+L  + A  T++L PPH+YVPWV+V+ +PL  D    +S VC+ Y+G   P
Sbjct: 174 ECATGKRGTELMHENAQLTDALQPPHEYVPWVLVNEKPLT-DPSQLLSSVCELYQGTEKP 232

Query: 218 KACSNL 223
             CS++
Sbjct: 233 DICSSM 238

Lysosomal thiol reductase that can reduce protein disulfide bonds. May facilitate the complete unfolding of proteins destined for lysosomal degradation. Plays an important role in antigen processing. Facilitates the generation of MHC class II-restricted epitodes from disulfide bond-containing antigen by the endocytic reduction of disulfide bonds. Facilitates also MHC class I-restricted recognition of exogenous antigens containing disulfide bonds by CD8+ T-cells or crosspresentation.

Rattus norvegicus (taxid: 10116)

EC: 1

EC: .

EC: 8

EC: .

EC: -

EC: .

EC: -

>sp|A6QPN6|GILT_BOVIN Gamma-interferon-inducible lysosomal thiol reductase OS=Bos taurus GN=IFI30 PE=2 SV=1

 Score =  109 bits (272), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 71/195 (36%), Positives = 101/195 (51%), Gaps = 33/195 (16%)

Query: 42  VKLGLYYESLCPYSANFIINYLVKIFEDVDLLSIVDLHLSPWGNAKIR--ANNSTFDCQH 99
           V + LYYE+LCP    F+I  L   +  + +L I+++ L P+GNA+ R  +    F CQH
Sbjct: 56  VNVSLYYEALCPGCREFLIRELFPTW--LMVLEILNVTLVPYGNAQERNVSGKWEFTCQH 113

Query: 100 GPSECLLNTVEACAIDSWPELNKHFPFIYCIESLVYEHKYSQWETCFDKLELDPKP---- 155
           G  ECLLN VEAC +D   E    F  I C+E +             D +E + KP    
Sbjct: 114 GERECLLNKVEACLLDQL-EQKIAFLTIVCLEEM-------------DDMEQNLKPCLQI 159

Query: 156 ---------IVDCYTSGYGTQLELKYAAETNSLVPPHQYVPWVVVDGQPLYEDYENFISY 206
                    I++C T   G QL    A  T++L PPH+YVPWVVV+G+ + +D E+ +  
Sbjct: 160 YAPKVSADSIMECATGNRGMQLLHINAQLTDALRPPHKYVPWVVVNGEHM-KDAEHLLHL 218

Query: 207 VCKAYKGNVVPKACS 221
           VC+ Y+G   P  C 
Sbjct: 219 VCRLYQGQ-KPDVCQ 232

Lysosomal thiol reductase that can reduce protein disulfide bonds. May facilitate the complete unfolding of proteins destined for lysosomal degradation. Plays an important role in antigen processing. Facilitates the generation of MHC class II-restricted epitodes from disulfide bond-containing antigen by the endocytic reduction of disulfide bonds. Facilitates also MHC class I-restricted recognition of exogenous antigens containing disulfide bonds by CD8+ T-cells or crosspresentation.

Bos taurus (taxid: 9913)

EC: 1

EC: .

EC: 8

EC: .

EC: -

EC: .

EC: -

>sp|P13284|GILT_HUMAN Gamma-interferon-inducible lysosomal thiol reductase OS=Homo sapiens GN=IFI30 PE=1 SV=3

 Score =  107 bits (267), Expect = 7e-23,   Method: Compositional matrix adjust.
 Identities = 69/191 (36%), Positives = 101/191 (52%), Gaps = 17/191 (8%)

Query: 42  VKLGLYYESLCPYSANFIINYLVKIFEDVDLLSIVDLHLSPWGNAKIR--ANNSTFDCQH 99
           V + LYYE+LC     F+I  L   +  + ++ I+++ L P+GNA+ +  +    F CQH
Sbjct: 62  VNVTLYYEALCGGCRAFLIRELFPTW--LLVMEILNVTLVPYGNAQEQNVSGRWEFKCQH 119

Query: 100 GPSECLLNTVEACAIDSWPELNKHFPF--IYCIESLVYEHKYSQWETCFD--KLELDPKP 155
           G  EC  N VEAC +D   EL+    F  I C+E   +E        C       L P  
Sbjct: 120 GEEECKFNKVEACVLD---ELDMELAFLTIVCMEE--FEDMERSLPLCLQLYAPGLSPDT 174

Query: 156 IVDCYTSGYGTQLELKYAAETNSLVPPHQYVPWVVVDGQPLYEDYENFISYVCKAYKG-- 213
           I++C     G QL    A  T++L PPH+YVPWV V+G+PL ED    ++ VC+ Y+G  
Sbjct: 175 IMECAMGDRGMQLMHANAQRTDALQPPHEYVPWVTVNGKPL-EDQTQLLTLVCQLYQGKK 233

Query: 214 -NVVPKACSNL 223
            +V P + S+L
Sbjct: 234 PDVCPSSTSSL 244

Lysosomal thiol reductase that can reduce protein disulfide bonds. May facilitate the complete unfolding of proteins destined for lysosomal degradation. Plays an important role in antigen processing. Facilitates the generation of MHC class II-restricted epitodes from disulfide bond-containing antigen by the endocytic reduction of disulfide bonds (By similarity). Facilitates also MHC class I-restricted recognition of exogenous antigens containing disulfide bonds by CD8+ T-cells or crosspresentation.

Homo sapiens (taxid: 9606)

EC: 1

EC: .

EC: 8

EC: .

EC: -

EC: .

EC: -

>sp|B3SP85|GILT_PIG Gamma-interferon-inducible-lysosomal thiol reductase OS=Sus scrofa GN=IFI30 PE=2 SV=1

 Score =  106 bits (264), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 74/204 (36%), Positives = 103/204 (50%), Gaps = 17/204 (8%)

Query: 24  LSGSVSASRTSPSDVNSKVKLGLYYESLCPYSANFIINYLVKIFEDVDLLSIVDLHLSPW 83
           L   V  S   P +VN      LYYESLC     F++  L   +  + +  I+++ L P+
Sbjct: 46  LQRPVGKSDPPPVNVN------LYYESLCNGCRYFLVRELFPTW--LMVWEILNVTLVPY 97

Query: 84  GNAKIR--ANNSTFDCQHGPSECLLNTVEACAIDSWPELNKHFPFIYCIESLVYEHKYSQ 141
           GNA+ R  +    F CQHG  EC +N VEAC +D   E N  F  I CIE L  +     
Sbjct: 98  GNAQERNVSGRWEFTCQHGEQECKMNKVEACLLDKL-EKNMAFLTIVCIEEL--DDMEKN 154

Query: 142 WETCFD--KLELDPKPIVDCYTSGYGTQLELKYAAETNSLVPPHQYVPWVVVDGQPLYED 199
            E C      ++ P  I++C     G QL    A  T++L PPH+YVPWVVV+G+P+ E 
Sbjct: 155 LEPCLQIYAPKVSPDSIMECAMGDRGMQLLHINAQLTDALKPPHEYVPWVVVNGKPMTEK 214

Query: 200 YENFISYVCKAYKGNVVPKACSNL 223
            +  +  VC+ Y+G   P  C  L
Sbjct: 215 -DQLLRLVCQLYEGE-KPDVCQIL 236

Lysosomal thiol reductase that can reduce protein disulfide bonds. May facilitate the complete unfolding of proteins destined for lysosomal degradation. Plays an important role in antigen processing. Facilitates the generation of MHC class II-restricted epitodes from disulfide bond-containing antigen by the endocytic reduction of disulfide bonds. Facilitates also MHC class I-restricted recognition of exogenous antigens containing disulfide bonds by CD8+ T-cells or crosspresentation.

Sus scrofa (taxid: 9823)

EC: 1

EC: .

EC: 8

EC: .

EC: -

EC: .

EC: -

>sp|O17861|YVRI_CAEEL GILT-like protein F37H8.5 OS=Caenorhabditis elegans GN=F37H8.5 PE=1 SV=1

 Score = 91.3 bits (225), Expect = 5e-18,   Method: Compositional matrix adjust.
 Identities = 60/185 (32%), Positives = 101/185 (54%), Gaps = 12/185 (6%)

Query: 39  NSKVKLGLYYESLCPYSANFIINYLVKIFEDVDLLSIVDLHLSPWGNAKIRANNSTFDCQ 98
           N K+ + +  E+LCP   NF+   L  I    +  + V++ L P+GNAK+   + T  CQ
Sbjct: 73  NQKINITVLIEALCPDCQNFLTKQLYPIVFK-NFANYVNIELVPFGNAKV-LEDGTIKCQ 130

Query: 99  HGPSECLLNTVEACAIDSWPELNKHFPFIYCI-ESLVYEHKYSQW-ETCFDKLELD---P 153
           HG  EC +N  E C IDS  +     P + CI ESL  + +++   + CF+KL++     
Sbjct: 131 HGEEECSINKFEGCFIDSMQD-QSPLPTLSCIEESLQKKVEFADAVQQCFEKLQIGGDIQ 189

Query: 154 KPIVDCYTSGYGTQLELKYAAETNSLVP-PHQYVPWVVVDGQPL--YEDYENFI-SYVCK 209
           +    C  S  G  L+ K AA T ++ P  H++VPWV+++G  L  ++ ++N + + +C+
Sbjct: 190 RLTQSCLVSKLGADLQNKAAAATANVWPEQHKFVPWVIINGVSLTSFQGFQNQLPTLLCE 249

Query: 210 AYKGN 214
            Y G+
Sbjct: 250 WYSGD 254

Caenorhabditis elegans (taxid: 6239)

>sp|P34276|YKJ2_CAEEL GILT-like protein C02D5.2 OS=Caenorhabditis elegans GN=C02D5.2 PE=3 SV=1

 Score = 88.2 bits (217), Expect = 5e-17,   Method: Compositional matrix adjust.
 Identities = 56/205 (27%), Positives = 101/205 (49%), Gaps = 12/205 (5%)

Query: 23  FLSGSVSASRTSPSDVNSKVKLGLYYESLCPYSANFIINYLVKIFEDVDLLSIVDLHLSP 82
           F+     A  T    V + VKL +Y E+ CP ++ F    L K ++ +  L+ ++L++ P
Sbjct: 120 FIEYEPKAGPTIKEPVENIVKLDVYMEAQCPDTSRFFRQQLKKAWDILGRLNRIELNVIP 179

Query: 83  WGNAKIRANNSTFD--CQHGPSECLLNTVEACAIDSWPELNKHFPFIYCIESLVYEHKYS 140
           +G A+     + F+  CQHGP+EC +N +  C ID +   +++ P + C++      KYS
Sbjct: 180 FGKARCTEKGNDFECQCQHGPTECQINQLMNCVIDRFGFPHRYLPGVLCMQG-----KYS 234

Query: 141 QWETCFDKLELDP---KPIVDCYTSGYGTQLELKYAAETNSLVPPHQYVPWVVVDGQPLY 197
             E      E  P   + + +C +   G +L      +T SL P   ++PW+V++G    
Sbjct: 235 LDEAMKCVTENYPSEYERMRECASGTRGRRLLALSGQKTASLTPAIDFIPWIVINGSRNS 294

Query: 198 EDYENFISYVCKAYKGNVVPKACSN 222
           +   +    VC+A +   +P AC +
Sbjct: 295 DALYDLTQNVCEAMQP--MPSACKD 317

Caenorhabditis elegans (taxid: 6239)

>sp|Q61Z40|YO30_CAEBR GILT-like protein CBG03282 OS=Caenorhabditis briggsae GN=CBG03282 PE=3 SV=1

 Score = 67.0 bits (162), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 41/204 (20%), Positives = 95/204 (46%), Gaps = 11/204 (5%)

Query: 14  LVFYITLFCFLSGSVSASRTSPSDVNSKVKLGLYYESLCPYSANFIINYLVKIFEDVDLL 73
            V+Y  LF  +   + +S+ +  +   KV +  + E  C  ++ ++  + + ++  +   
Sbjct: 8   FVYYSFLFILV---LCSSKDTEVNNGEKVNIVAFGEGRCSDTSFWMKWHWLPMWRMLGST 64

Query: 74  SIVDLHLSPWGNAKIRANNSTFD-----CQHGPSECLLNTVEACAIDSWPELNKHFPFIY 128
             ++    P+G      ++ + D     C HG  ECLLN ++AC I++ P   ++   + 
Sbjct: 65  GRINFEYHPYGIKTTCVDSDSGDDVVCECHHGARECLLNQLQACVIEALPNFEEYMEVVT 124

Query: 129 CIESLVYEHKYSQWETCFDK-LELDPKPIVDCYTSGYGTQLELKYAAETNSLVPPHQYVP 187
           CI+    ++     E CF++  +L+   ++ C  S +G +L   +      + P   + P
Sbjct: 125 CIQG--KQNISMAAEACFNEPSKLERAKMMSCADSRHGRKLFSDHENFVAQMAPEMDWAP 182

Query: 188 WVVVDGQPLYEDYENFISYVCKAY 211
           W++++G+   E  E+   ++C  +
Sbjct: 183 WILINGKRYKEAEEDLWQFLCDRF 206

Caenorhabditis briggsae (taxid: 6238)

>sp|Q23570|YO30_CAEEL GILT-like protein ZK669.3 OS=Caenorhabditis elegans GN=ZK669.3 PE=1 SV=1

 Score = 66.2 bits (160), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 32/123 (26%), Positives = 60/123 (48%), Gaps = 3/123 (2%)

Query: 90  ANNSTFDCQHGPSECLLNTVEACAIDSWPELNKHFPFIYCIESLVYEHKYSQWETCFDK- 148
           A++   DC HG  ECLLN ++AC I++ P    +   + CI+    ++     E CF+  
Sbjct: 84  ADDVVCDCHHGNRECLLNQLQACVIEALPNFEDYMEVVTCIQG--KQNISMAAEVCFEGP 141

Query: 149 LELDPKPIVDCYTSGYGTQLELKYAAETNSLVPPHQYVPWVVVDGQPLYEDYENFISYVC 208
            +LD   +++C  S +G +L          + P   + PW++++G    E  E+   ++C
Sbjct: 142 TKLDRTKMMECAESRHGRKLFSDQENIVAQMAPEMDWAPWILINGTRYKEAEEDLWQFLC 201

Query: 209 KAY 211
             +
Sbjct: 202 DRF 204

Caenorhabditis elegans (taxid: 6239)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	244
225434492	259	PREDICTED: gamma-interferon-inducible ly	0.799	0.752	0.772	5e-83
147805691	259	hypothetical protein VITISV_012674 [Viti	0.799	0.752	0.767	6e-82
224103875	255	predicted protein [Populus trichocarpa]	0.75	0.717	0.739	4e-79
18390723	265	GILT domain-containing protein [Arabidop	0.848	0.781	0.660	1e-77
8954038	262	Contains similarity to an unknown protei	0.848	0.790	0.660	2e-77
225434490	284	PREDICTED: gamma-interferon-inducible ly	0.909	0.781	0.651	2e-77
297843502	268	hypothetical protein ARALYDRAFT_470730 [	0.872	0.794	0.615	8e-76
357458115	260	Gamma-interferon-inducible lysosomal thi	0.811	0.761	0.655	7e-75
388512129	260	unknown [Medicago truncatula]	0.811	0.761	0.650	1e-74
449454993	223	PREDICTED: gamma-interferon-inducible ly	0.729	0.798	0.716	3e-73

>gi|225434492|ref|XP_002275283.1| PREDICTED: gamma-interferon-inducible lysosomal thiol reductase isoform 2 [Vitis vinifera] gi|297745847|emb|CBI15903.3| unnamed protein product [Vitis vinifera]

 Score =  313 bits (801), Expect = 5e-83,   Method: Compositional matrix adjust.
 Identities = 153/198 (77%), Positives = 170/198 (85%), Gaps = 3/198 (1%)

Query: 30  ASRTSPSDVNSKVKLGLYYESLCPYSANFIINYLVKIFEDVDLLSIVDLHLSPWGNAKIR 89
           AS   PSD + KV LGLYYESLCPYSANFIINYLVKIFE+  L+SIVDL+L P+GNAKIR
Sbjct: 21  ASGALPSD-SDKVSLGLYYESLCPYSANFIINYLVKIFEN-GLISIVDLNLVPFGNAKIR 78

Query: 90  ANNSTFDCQHGPSECLLNTVEACAIDSWPELNKHFPFIYCIESLVYEHKYSQWETCFDKL 149
            NN T DCQHGP+ECLLNTVEACAID WP+L++HF FIYCIE+LVYE KY QWETCF+KL
Sbjct: 79  GNN-TIDCQHGPAECLLNTVEACAIDVWPDLSQHFSFIYCIETLVYERKYPQWETCFEKL 137

Query: 150 ELDPKPIVDCYTSGYGTQLELKYAAETNSLVPPHQYVPWVVVDGQPLYEDYENFISYVCK 209
            LDPKPI DCY SGYG +LELKYAAETN L PPH+YVPWVVVDGQPLYE+YENFISY+CK
Sbjct: 138 GLDPKPISDCYNSGYGKELELKYAAETNGLQPPHKYVPWVVVDGQPLYEEYENFISYICK 197

Query: 210 AYKGNVVPKACSNLFLIT 227
           AYKG  +P AC+ L L T
Sbjct: 198 AYKGPSIPSACNELSLNT 215

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|147805691|emb|CAN76152.1| hypothetical protein VITISV_012674 [Vitis vinifera]

 Score =  309 bits (792), Expect = 6e-82,   Method: Compositional matrix adjust.
 Identities = 152/198 (76%), Positives = 169/198 (85%), Gaps = 3/198 (1%)

Query: 30  ASRTSPSDVNSKVKLGLYYESLCPYSANFIINYLVKIFEDVDLLSIVDLHLSPWGNAKIR 89
           AS   PSD + KV LGLYYESLCPYSANFIINYLVKIFE+  L+SIV L+L P+GNAKIR
Sbjct: 21  ASGALPSD-SDKVSLGLYYESLCPYSANFIINYLVKIFEN-GLISIVXLNLVPFGNAKIR 78

Query: 90  ANNSTFDCQHGPSECLLNTVEACAIDSWPELNKHFPFIYCIESLVYEHKYSQWETCFDKL 149
            NN T DCQHGP+ECLLNTVEACAID WP+L++HF FIYCIE+LVYE KY QWETCF+KL
Sbjct: 79  GNN-TIDCQHGPAECLLNTVEACAIDVWPDLSQHFSFIYCIETLVYEXKYPQWETCFEKL 137

Query: 150 ELDPKPIVDCYTSGYGTQLELKYAAETNSLVPPHQYVPWVVVDGQPLYEDYENFISYVCK 209
            LDPKPI DCY SGYG +LELKYAAETN L PPH+YVPWVVVDGQPLYE+YENFISY+CK
Sbjct: 138 GLDPKPISDCYNSGYGKELELKYAAETNGLQPPHKYVPWVVVDGQPLYEEYENFISYICK 197

Query: 210 AYKGNVVPKACSNLFLIT 227
           AYKG  +P AC+ L L T
Sbjct: 198 AYKGPSIPSACNELSLNT 215

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224103875|ref|XP_002313228.1| predicted protein [Populus trichocarpa] gi|222849636|gb|EEE87183.1| predicted protein [Populus trichocarpa]

 Score =  300 bits (768), Expect = 4e-79,   Method: Compositional matrix adjust.
 Identities = 136/184 (73%), Positives = 159/184 (86%), Gaps = 1/184 (0%)

Query: 39  NSKVKLGLYYESLCPYSANFIINYLVKIFEDVDLLSIVDLHLSPWGNAKIRANNSTFDCQ 98
           + KV L LYYESLCPYSANFI+NYL K+ ED DLLSIVDL+LSPWGNAKIR N+ TF CQ
Sbjct: 33  SDKVSLALYYESLCPYSANFIVNYLDKLVEDDDLLSIVDLYLSPWGNAKIRGND-TFVCQ 91

Query: 99  HGPSECLLNTVEACAIDSWPELNKHFPFIYCIESLVYEHKYSQWETCFDKLELDPKPIVD 158
           HGP ECLLNTVEACAI +WP+L  HFPF+YC+E LVYE KY +WE+CF++L LDPK + +
Sbjct: 92  HGPYECLLNTVEACAIHAWPKLEDHFPFVYCVEKLVYERKYPEWESCFEELGLDPKRVSE 151

Query: 159 CYTSGYGTQLELKYAAETNSLVPPHQYVPWVVVDGQPLYEDYENFISYVCKAYKGNVVPK 218
           CYT GYG +LEL+YAAETN+L PPH+YVPWVVVDGQP+YEDYE+FI+Y+CKAYKG   PK
Sbjct: 152 CYTGGYGNELELEYAAETNALQPPHKYVPWVVVDGQPIYEDYEDFINYICKAYKGTATPK 211

Query: 219 ACSN 222
           ACSN
Sbjct: 212 ACSN 215

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|18390723|ref|NP_563779.1| GILT domain-containing protein [Arabidopsis thaliana] gi|15146334|gb|AAK83650.1| At1g07080/F10K1_15 [Arabidopsis thaliana] gi|15809756|gb|AAL06806.1| At1g07080/F10K1_15 [Arabidopsis thaliana] gi|332189954|gb|AEE28075.1| GILT domain-containing protein [Arabidopsis thaliana]

 Score =  295 bits (754), Expect = 1e-77,   Method: Compositional matrix adjust.
 Identities = 138/209 (66%), Positives = 170/209 (81%), Gaps = 2/209 (0%)

Query: 14  LVFYITLFCFLSGSVSASRTSPSDVNSKVKLGLYYESLCPYSANFIINYLVKIFEDVDLL 73
           LV Y+ LF F S S  +  + PS  + KV +GLYYESLCPY ++FI+N+L K+FED DL+
Sbjct: 12  LVCYVFLFPFASSSDYSGVSLPSS-SPKVSVGLYYESLCPYCSSFIVNHLAKLFED-DLI 69

Query: 74  SIVDLHLSPWGNAKIRANNSTFDCQHGPSECLLNTVEACAIDSWPELNKHFPFIYCIESL 133
           SIVDLHLSPWGN K+R++N T  CQHG  EC L+TVEACAID+WP+++ HFPFIYC+E L
Sbjct: 70  SIVDLHLSPWGNTKLRSDNVTAVCQHGAFECFLDTVEACAIDAWPKVSDHFPFIYCVEKL 129

Query: 134 VYEHKYSQWETCFDKLELDPKPIVDCYTSGYGTQLELKYAAETNSLVPPHQYVPWVVVDG 193
           V EHKY +WETC++KL L+ KP+ DC +SG+G +L L YAAETN+L PPH+YVPWVVVDG
Sbjct: 130 VTEHKYDKWETCYEKLNLNSKPVADCLSSGHGNELALHYAAETNALQPPHKYVPWVVVDG 189

Query: 194 QPLYEDYENFISYVCKAYKGNVVPKACSN 222
           QPLYEDYENFISY+CKAYKGN VP AC+ 
Sbjct: 190 QPLYEDYENFISYICKAYKGNKVPGACTK 218

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|8954038|gb|AAF82212.1|AC067971_20 Contains similarity to an unknown protein F7A7_100 gi|7327817 from Arabidopsis thaliana BAC F7A7 gb|AL161946. ESTs gb|N65842, gb|F19836 and gb|AI993679 come from this gene [Arabidopsis thaliana]

 Score =  294 bits (753), Expect = 2e-77,   Method: Compositional matrix adjust.
 Identities = 138/209 (66%), Positives = 170/209 (81%), Gaps = 2/209 (0%)

Query: 14  LVFYITLFCFLSGSVSASRTSPSDVNSKVKLGLYYESLCPYSANFIINYLVKIFEDVDLL 73
           LV Y+ LF F S S  +  + PS  + KV +GLYYESLCPY ++FI+N+L K+FED DL+
Sbjct: 9   LVCYVFLFPFASSSDYSGVSLPSS-SPKVSVGLYYESLCPYCSSFIVNHLAKLFED-DLI 66

Query: 74  SIVDLHLSPWGNAKIRANNSTFDCQHGPSECLLNTVEACAIDSWPELNKHFPFIYCIESL 133
           SIVDLHLSPWGN K+R++N T  CQHG  EC L+TVEACAID+WP+++ HFPFIYC+E L
Sbjct: 67  SIVDLHLSPWGNTKLRSDNVTAVCQHGAFECFLDTVEACAIDAWPKVSDHFPFIYCVEKL 126

Query: 134 VYEHKYSQWETCFDKLELDPKPIVDCYTSGYGTQLELKYAAETNSLVPPHQYVPWVVVDG 193
           V EHKY +WETC++KL L+ KP+ DC +SG+G +L L YAAETN+L PPH+YVPWVVVDG
Sbjct: 127 VTEHKYDKWETCYEKLNLNSKPVADCLSSGHGNELALHYAAETNALQPPHKYVPWVVVDG 186

Query: 194 QPLYEDYENFISYVCKAYKGNVVPKACSN 222
           QPLYEDYENFISY+CKAYKGN VP AC+ 
Sbjct: 187 QPLYEDYENFISYICKAYKGNKVPGACTK 215

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225434490|ref|XP_002275261.1| PREDICTED: gamma-interferon-inducible lysosomal thiol reductase isoform 1 [Vitis vinifera]

 Score =  294 bits (752), Expect = 2e-77,   Method: Compositional matrix adjust.
 Identities = 148/227 (65%), Positives = 172/227 (75%), Gaps = 5/227 (2%)

Query: 5   SYSSTKALSLVFYITLFCFLSGSVSASRTSPSDVNS---KVKLGLYYESLCPYSANFIIN 61
           S SS  +LS      L   +S   SA+    S   S   KV L LYYE+LCPY +NFI+N
Sbjct: 15  SESSMDSLSFSHLPCLLLIISSLFSAATARASISASEAEKVPLALYYETLCPYCSNFIVN 74

Query: 62  YLVKIFEDVD-LLSIVDLHLSPWGNAKIRANNSTFDCQHGPSECLLNTVEACAIDSWPEL 120
           +L+K+F + D L+SIVDL L P+GNAKI   N T  CQHGP+ECLLNTVEACAID WP+L
Sbjct: 75  HLIKLFNNGDGLVSIVDLKLLPYGNAKI-GPNGTITCQHGPAECLLNTVEACAIDVWPDL 133

Query: 121 NKHFPFIYCIESLVYEHKYSQWETCFDKLELDPKPIVDCYTSGYGTQLELKYAAETNSLV 180
           ++HF FIYCIE+LVYE KY QWETCF+KL LDPKPI DCY SGYG +LELKYAAETN L 
Sbjct: 134 SQHFSFIYCIETLVYERKYPQWETCFEKLGLDPKPISDCYNSGYGKELELKYAAETNGLQ 193

Query: 181 PPHQYVPWVVVDGQPLYEDYENFISYVCKAYKGNVVPKACSNLFLIT 227
           PPH+YVPWVVVDGQPLYE+YENFISY+CKAYKG  +P AC+ L L T
Sbjct: 194 PPHKYVPWVVVDGQPLYEEYENFISYICKAYKGPSIPSACNELSLNT 240

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297843502|ref|XP_002889632.1| hypothetical protein ARALYDRAFT_470730 [Arabidopsis lyrata subsp. lyrata] gi|297335474|gb|EFH65891.1| hypothetical protein ARALYDRAFT_470730 [Arabidopsis lyrata subsp. lyrata]

 Score =  289 bits (739), Expect = 8e-76,   Method: Compositional matrix adjust.
 Identities = 139/226 (61%), Positives = 172/226 (76%), Gaps = 13/226 (5%)

Query: 4   SSYSSTKALSLVFYITLF-------CFLSGSVSASRTSPSDVNSKVKLGLYYESLCPYSA 56
           +S +S   L LV Y+ LF             +S   +SP     KV +GLYYESLCPY +
Sbjct: 2   ASITSKLLLVLVCYVFLFPFASFSSSADFSGISLPSSSP-----KVSVGLYYESLCPYCS 56

Query: 57  NFIINYLVKIFEDVDLLSIVDLHLSPWGNAKIRANNSTFDCQHGPSECLLNTVEACAIDS 116
           +FI+N+L K+FED DL+SIVDLHLSPWGN K+R +N T  CQHG  EC L+TVEACAID+
Sbjct: 57  SFIVNHLTKLFED-DLISIVDLHLSPWGNTKLRPDNVTAVCQHGAFECFLDTVEACAIDA 115

Query: 117 WPELNKHFPFIYCIESLVYEHKYSQWETCFDKLELDPKPIVDCYTSGYGTQLELKYAAET 176
           WP+++ HFPFIYC+E LV EHKY++WETC++KL L+ KP+ DC ++G+G +L L YAAET
Sbjct: 116 WPKVSDHFPFIYCVEKLVTEHKYNKWETCYEKLNLNSKPVADCLSTGHGNELALHYAAET 175

Query: 177 NSLVPPHQYVPWVVVDGQPLYEDYENFISYVCKAYKGNVVPKACSN 222
           N+L PPHQYVPWVVVDGQPLYEDYENFISY+CKAYKGN VP AC+ 
Sbjct: 176 NALQPPHQYVPWVVVDGQPLYEDYENFISYICKAYKGNKVPGACAK 221

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357458115|ref|XP_003599338.1| Gamma-interferon-inducible lysosomal thiol reductase [Medicago truncatula] gi|355488386|gb|AES69589.1| Gamma-interferon-inducible lysosomal thiol reductase [Medicago truncatula]

 Score =  286 bits (731), Expect = 7e-75,   Method: Compositional matrix adjust.
 Identities = 137/209 (65%), Positives = 162/209 (77%), Gaps = 11/209 (5%)

Query: 14  LVFYITLFCFLSGSVSASRTSPSDVNSKVKLGLYYESLCPYSANFIINYLVKIFEDVDLL 73
           L+ +I+ F   S         PS  +SKV L LYYESLCPYSANFI+NYL KIF+  DLL
Sbjct: 13  LILFISFFSLFS---------PSQSHSKVSLELYYESLCPYSANFIVNYLPKIFKH-DLL 62

Query: 74  SIVDLHLSPWGNAKIRANNSTFDCQHGPSECLLNTVEACAIDSWPELNKHFPFIYCIESL 133
           SIVDL L PWGNAK+R N STFDCQHGP ECLLNTVEACAID WP+L KHF FIYC+E L
Sbjct: 63  SIVDLKLVPWGNAKLRGN-STFDCQHGPYECLLNTVEACAIDIWPQLEKHFSFIYCVEDL 121

Query: 134 VYEHKYSQWETCFDKLELDPKPIVDCYTSGYGTQLELKYAAETNSLVPPHQYVPWVVVDG 193
            Y+ K ++WE+CF+KL LD K + DCY S  G +LELKYA ETN+L PPH+YVPWVVVDG
Sbjct: 122 AYQGKRTEWESCFEKLGLDSKLVNDCYRSERGNELELKYADETNALQPPHKYVPWVVVDG 181

Query: 194 QPLYEDYENFISYVCKAYKGNVVPKACSN 222
           +PLYEDYENF++Y+CKAY+G   PK+C+ 
Sbjct: 182 EPLYEDYENFLTYICKAYQGTDAPKSCTQ 210

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|388512129|gb|AFK44126.1| unknown [Medicago truncatula]

 Score =  285 bits (729), Expect = 1e-74,   Method: Compositional matrix adjust.
 Identities = 136/209 (65%), Positives = 162/209 (77%), Gaps = 11/209 (5%)

Query: 14  LVFYITLFCFLSGSVSASRTSPSDVNSKVKLGLYYESLCPYSANFIINYLVKIFEDVDLL 73
           L+ +I+ F   S         PS  +SKV L LYYESLCPYSANFI+NYL KIF+  DLL
Sbjct: 13  LILFISFFSLFS---------PSQSHSKVSLELYYESLCPYSANFIVNYLPKIFKH-DLL 62

Query: 74  SIVDLHLSPWGNAKIRANNSTFDCQHGPSECLLNTVEACAIDSWPELNKHFPFIYCIESL 133
           SIVDL L PWGNAK+R N STFDCQHGP ECLLNTVEACAID WP+L +HF FIYC+E L
Sbjct: 63  SIVDLKLVPWGNAKLRGN-STFDCQHGPYECLLNTVEACAIDIWPQLERHFSFIYCVEDL 121

Query: 134 VYEHKYSQWETCFDKLELDPKPIVDCYTSGYGTQLELKYAAETNSLVPPHQYVPWVVVDG 193
            Y+ K ++WE+CF+KL LD K + DCY S  G +LELKYA ETN+L PPH+YVPWVVVDG
Sbjct: 122 AYQGKRTEWESCFEKLGLDSKLVNDCYRSERGNELELKYADETNALQPPHKYVPWVVVDG 181

Query: 194 QPLYEDYENFISYVCKAYKGNVVPKACSN 222
           +PLYEDYENF++Y+CKAY+G   PK+C+ 
Sbjct: 182 EPLYEDYENFLTYICKAYQGTDAPKSCTQ 210

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449454993|ref|XP_004145238.1| PREDICTED: gamma-interferon-inducible lysosomal thiol reductase-like [Cucumis sativus] gi|449472266|ref|XP_004153541.1| PREDICTED: gamma-interferon-inducible lysosomal thiol reductase-like [Cucumis sativus] gi|449514550|ref|XP_004164407.1| PREDICTED: gamma-interferon-inducible lysosomal thiol reductase-like [Cucumis sativus]

 Score =  280 bits (716), Expect = 3e-73,   Method: Compositional matrix adjust.
 Identities = 129/180 (71%), Positives = 158/180 (87%), Gaps = 2/180 (1%)

Query: 41  KVKLGLYYESLCPYSANFIINYLVKIFEDVDLLSIVDLHLSPWGNAKIRANNSTFDCQHG 100
           KV L LYYESLCPYSANFI+NYL+K+F+D DL+SIVDL L P+GNA++  N+S   CQHG
Sbjct: 38  KVSLKLYYESLCPYSANFIVNYLIKLFDD-DLISIVDLRLVPYGNARVGRNDS-ITCQHG 95

Query: 101 PSECLLNTVEACAIDSWPELNKHFPFIYCIESLVYEHKYSQWETCFDKLELDPKPIVDCY 160
           PSECLLNT+EACAI++WPEL+ HFPFIYC+E LVY+ KY+QWE+CF+KL L+PKPI DCY
Sbjct: 96  PSECLLNTMEACAINAWPELDGHFPFIYCVEYLVYKRKYTQWESCFEKLGLNPKPISDCY 155

Query: 161 TSGYGTQLELKYAAETNSLVPPHQYVPWVVVDGQPLYEDYENFISYVCKAYKGNVVPKAC 220
           ++  G +LEL+YAAET++L PPH+YVPWVVVDGQPLYEDYENFI+Y+C+AYKG  VP AC
Sbjct: 156 STELGKKLELEYAAETDNLQPPHKYVPWVVVDGQPLYEDYENFINYICEAYKGPAVPTAC 215

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	244
TAIR|locus:2007407	265	AT1G07080 "AT1G07080" [Arabido	0.844	0.777	0.663	7.9e-78
TAIR|locus:2149730	233	OSH1 "AT5G01580" [Arabidopsis	0.799	0.836	0.512	2.1e-52
TAIR|locus:2135813	232	AT4G12890 "AT4G12890" [Arabido	0.852	0.896	0.460	1.5e-44
TAIR|locus:2123286	231	AT4G12900 "AT4G12900" [Arabido	0.790	0.835	0.466	1.2e-42
TAIR|locus:2135783	229	AT4G12870 "AT4G12870" [Arabido	0.815	0.868	0.429	1.5e-37
TAIR|locus:2123251	243	GILT "AT4G12960" [Arabidopsis	0.721	0.724	0.429	5.7e-36
MGI|MGI:2137648	248	Ifi30 "interferon gamma induci	0.754	0.741	0.375	9.4e-27
RGD|1310758	248	Ifi30 "interferon gamma induci	0.721	0.709	0.376	2.5e-26
UNIPROTKB|F1PK63	251	IFI30 "Uncharacterized protein	0.696	0.677	0.367	9.7e-25
UNIPROTKB|A6QPN6	244	IFI30 "Gamma-interferon-induci	0.754	0.754	0.370	1.6e-24

TAIR|locus:2007407 AT1G07080 "AT1G07080" [Arabidopsis thaliana (taxid:3702)]

 Score = 783 (280.7 bits), Expect = 7.9e-78, P = 7.9e-78
 Identities = 138/208 (66%), Positives = 170/208 (81%)

Query:    14 LVFYITLFCFLSGSVSASRTSPSDVNSKVKLGLYYESLCPYSANFIINYLVKIFEDVDLL 73
             LV Y+ LF F S S  +  + PS  + KV +GLYYESLCPY ++FI+N+L K+FED DL+
Sbjct:    12 LVCYVFLFPFASSSDYSGVSLPSS-SPKVSVGLYYESLCPYCSSFIVNHLAKLFED-DLI 69

Query:    74 SIVDLHLSPWGNAKIRANNSTFDCQHGPSECLLNTVEACAIDSWPELNKHFPFIYCIESL 133
             SIVDLHLSPWGN K+R++N T  CQHG  EC L+TVEACAID+WP+++ HFPFIYC+E L
Sbjct:    70 SIVDLHLSPWGNTKLRSDNVTAVCQHGAFECFLDTVEACAIDAWPKVSDHFPFIYCVEKL 129

Query:   134 VYEHKYSQWETCFDKLELDPKPIVDCYTSGYGTQLELKYAAETNSLVPPHQYVPWVVVDG 193
             V EHKY +WETC++KL L+ KP+ DC +SG+G +L L YAAETN+L PPH+YVPWVVVDG
Sbjct:   130 VTEHKYDKWETCYEKLNLNSKPVADCLSSGHGNELALHYAAETNALQPPHKYVPWVVVDG 189

Query:   194 QPLYEDYENFISYVCKAYKGNVVPKACS 221
             QPLYEDYENFISY+CKAYKGN VP AC+
Sbjct:   190 QPLYEDYENFISYICKAYKGNKVPGACT 217

GO:0003824 "catalytic activity" evidence=ISS

GO:0005576 "extracellular region" evidence=ISM

GO:0008150 "biological_process" evidence=ND

GO:0005773 "vacuole" evidence=IDA

TAIR|locus:2149730 OSH1 "AT5G01580" [Arabidopsis thaliana (taxid:3702)]

 Score = 543 (196.2 bits), Expect = 2.1e-52, P = 2.1e-52
 Identities = 102/199 (51%), Positives = 134/199 (67%)

Query:    22 CFLSGSVSASRTSPSDVNSKVKLGLYYESLCPYSANFIINYLVKIFEDVDLLSIVDLHLS 81
             C  S ++     S S  + KV L LYYE+LCP+ A FI+N L KIFE   L+S +DL L 
Sbjct:     8 CITSCTIFFCLLSLSS-SQKVTLSLYYEALCPFCAEFIVNRLPKIFE-TGLISSIDLQLV 65

Query:    82 PWGNAKIRANNSTFDCQHGPSECLLNTVEACAIDSWPELNKHFPFIYCIESLVYEHKYSQ 141
             PWGNA IR +  T  CQHG +EC LN + ACAI+++P++ KHF +IYC E LV E+K  +
Sbjct:    66 PWGNAAIRPDG-TILCQHGEAECALNAIHACAINAYPDVMKHFGYIYCTEQLVLENKLEK 124

Query:   142 WETCFDKLELDPKPIVDCYTSGYGTQLELKYAAETNSLVPPHQYVPWVVVDGQPLYEDYE 201
             W  C + + L  +  VDCY +GYG QLE +YA ET+ L P H++VPWVVV+  PL E+Y+
Sbjct:   125 WADCLEMVGLS-RAAVDCYINGYGNQLEQRYAEETSELYPAHRFVPWVVVNNLPLQENYQ 183

Query:   202 NFISYVCKAYKGNVVPKAC 220
             NF+ YVC AY  N VP+AC
Sbjct:   184 NFVMYVCNAYGSNQVPEAC 202

GO:0003824 "catalytic activity" evidence=ISS

GO:0005576 "extracellular region" evidence=ISM

GO:0008150 "biological_process" evidence=ND

TAIR|locus:2135813 AT4G12890 "AT4G12890" [Arabidopsis thaliana (taxid:3702)]

 Score = 469 (170.2 bits), Expect = 1.5e-44, P = 1.5e-44
 Identities = 100/217 (46%), Positives = 131/217 (60%)

Query:     9 TKALSLVFYITLFCFLSGSVSASRTSPSDVNSKVKLGLYYESLCPYSANFIINYLVKIFE 68
             TK + L   + L C    + S +     + N KVK+ LYYESLCPY  NFI++ L KIF 
Sbjct:     7 TKFVDLFPCLFLACLFVFTYSNNLVVAENSN-KVKINLYYESLCPYCQNFIVDDLGKIF- 64

Query:    69 DVDLLSIVDLHLSPWGNAKIRANNSTFDCQHGPSECLLNTVEACAIDSWPELNKHFPFIY 128
             D DLL I DL L P+GNA I +NN T  CQHG  EC LN +EAC I + P+    + FI 
Sbjct:    65 DSDLLKITDLKLVPFGNAHI-SNNLTITCQHGEEECKLNALEACGIRTLPDPKLQYKFIR 123

Query:   129 CIESLVYEHKYSQWETCFDKLELDPKPIVDCYTSGYGTQLELKYAAETNSLVPPHQYVPW 188
             C+E        ++WE+C  K   + K I DCY      +L L YA  T+SL P H+YVPW
Sbjct:   124 CVEK-----DTNEWESCVKKSGRE-KAINDCYNGDLSQKLILGYAKLTSSLKPKHEYVPW 177

Query:   189 VVVDGQPLYEDYENFISYVCKAYKGNVVPKACSNLFL 225
             V ++G+PLY++Y N ++ VCKAYKG  +PK CS+  L
Sbjct:   178 VTLNGKPLYDNYHNLVAQVCKAYKGKDLPKLCSSSVL 214

GO:0003824 "catalytic activity" evidence=ISS

GO:0005576 "extracellular region" evidence=ISM

GO:0008150 "biological_process" evidence=ND

TAIR|locus:2123286 AT4G12900 "AT4G12900" [Arabidopsis thaliana (taxid:3702)]

 Score = 451 (163.8 bits), Expect = 1.2e-42, P = 1.2e-42
 Identities = 98/210 (46%), Positives = 131/210 (62%)

Query:    14 LVFY--ITLFCFLSGSVSASRTSPSDVNSKVKLGLYYESLCPYSANFIINYLVKIFEDVD 71
             LVF+  + LF F S ++ A     SD   KVKL LYYESLCP   NFI+++L KIF + D
Sbjct:    13 LVFFACLLLFTFSSHNLVAGE---SD---KVKLNLYYESLCPSCQNFIVHHLGKIF-NTD 65

Query:    72 LLSIVDLHLSPWGNAKIRANNSTFDCQHGPSECLLNTVEACAIDSWPELNKHFPFIYCIE 131
             L +I DL L P+GNA + +++ T  CQHG  EC LN +EACAI +WP    H+ FI C+E
Sbjct:    66 LHTITDLKLIPFGNAHV-SDDLTVTCQHGEEECKLNALEACAIRTWPNQRLHYKFIRCVE 124

Query:   132 SLVYEHKYSQWETCFDKLELDPKPIVDCYTSGYGTQLELKYAAETNSLVPPHQYVPWVVV 191
             +       + WE+C  K   + K I DCY      +L L YA +T SL P H+YVPW+ +
Sbjct:   125 T-----NTNAWESCVKKYGGE-KAINDCYNGDLSKELILGYANQTLSLKPEHKYVPWMTL 178

Query:   192 DGQPLYEDYENFISYVCKAYKGNV-VPKAC 220
             +G+PLYE+  +F+  VCKAYKG   +PK C
Sbjct:   179 NGEPLYENIGDFVDLVCKAYKGKAALPKLC 208

GO:0003824 "catalytic activity" evidence=ISS

GO:0005576 "extracellular region" evidence=ISM

TAIR|locus:2135783 AT4G12870 "AT4G12870" [Arabidopsis thaliana (taxid:3702)]

 Score = 403 (146.9 bits), Expect = 1.5e-37, P = 1.5e-37
 Identities = 92/214 (42%), Positives = 126/214 (58%)

Query:    14 LVFYITLFCFLSGSVSASR-TSPSDVNSKVKLGLYYESLCPYSANFIINYLVKIFEDVDL 72
             LVF+    CF+  + S    T  SD   KV+L LYYESLCP   +FI++ LVK+F D DL
Sbjct:    10 LVFFA---CFVLFTFSHKLVTGESD---KVELNLYYESLCPGCQSFIVDELVKVF-DSDL 62

Query:    73 LSIVDLHLSPWGNAKIRANNSTFDCQHGPSECLLNTVEACAIDSWPELNKHFPFIYCIES 132
              +I D+ L P+G AK+ +NN T  CQHG  EC LN +EAC I++ P     + FI C+E+
Sbjct:    63 DTITDVKLVPFGYAKV-SNNLTVICQHGEEECKLNALEACVINTLPNPKSQYKFIRCVEN 121

Query:   133 LVYEHKYSQWETCFDKLELDPKPIVDCYTSGYGTQLELKYAAETNSLVPPHQYVPWVVVD 192
                      WE+   K   + K I DCY S    +L L YA +T+SL P H++VPWV ++
Sbjct:   122 -----NTDNWESSCLKGYGNEKAINDCYNSDLSKKLILGYAKQTSSLKPKHEFVPWVTIN 176

Query:   193 GQPLYEDYENFISYVCKAYKGNV-VPKACSNLFL 225
              +PLY   ++ +  VCKAYKG   +P  CS+  L
Sbjct:   177 SKPLYTKLDDLVGQVCKAYKGKTPLPIDCSSAAL 210

GO:0003824 "catalytic activity" evidence=ISS

GO:0005576 "extracellular region" evidence=ISM

TAIR|locus:2123251 GILT "AT4G12960" [Arabidopsis thaliana (taxid:3702)]

 Score = 388 (141.6 bits), Expect = 5.7e-36, P = 5.7e-36
 Identities = 85/198 (42%), Positives = 120/198 (60%)

Query:    39 NSKVKLGLYYESLCPYSANFIINYLVKIFEDVDLLSIVDLHLSPWGNAKIRANNSTFDCQ 98
             + KVKL LYYESLCP    FI++ L KIF D DL +I DL L P+GNA++ ++N T  CQ
Sbjct:    29 SGKVKLNLYYESLCPGCQEFIVDDLGKIF-DYDLYTITDLKLFPFGNAEL-SDNLTVTCQ 86

Query:    99 HGPSECLLNTVEACAIDSWPE-LNK---------HFPFIYCIESLVYEHKYSQWETCFDK 148
             HG  EC LN +EACA+ +WP+  +K          + FI C+ES   + K   WE+C   
Sbjct:    87 HGEEECKLNALEACALRTWPDQFDKCDGYGTQKSQYSFIRCVES---DTK--GWESCVKN 141

Query:   149 LELDPKPIVDCYTSGYGTQLELKYAAETNSLVPPHQYVPWVVVDGQPL---YEDYENFIS 205
                + K I DCY      +L L YA +T +L PPH+YVPWV ++G+PL    +  ++ ++
Sbjct:   142 SGRE-KAINDCYNGDLSRKLILGYATKTKNLKPPHEYVPWVTLNGKPLDDSVQSTDDLVA 200

Query:   206 YVCKAYKGNV-VPKACSN 222
              +C AYKG   +PK C++
Sbjct:   201 QICNAYKGKTTLPKVCNS 218

GO:0003824 "catalytic activity" evidence=ISS

GO:0005576 "extracellular region" evidence=ISM

GO:0008150 "biological_process" evidence=ND

MGI|MGI:2137648 Ifi30 "interferon gamma inducible protein 30" [Mus musculus (taxid:10090)]

 Score = 301 (111.0 bits), Expect = 9.4e-27, P = 9.4e-27
 Identities = 72/192 (37%), Positives = 108/192 (56%)

Query:    35 PSDVNSKVKLGLYYESLCPYSANFIINYLVKIFEDVDLLSIVDLHLSPWGNAKIRANNST 94
             P   +  V++ LYYESLC     F++  L   +  + ++ I+++ L P+GNA+ R  + T
Sbjct:    52 PLPPSPPVRVSLYYESLCGACRYFLVRDLFPTW--LMVMEIMNITLVPYGNAQERNVSGT 109

Query:    95 --FDCQHGPSECLLNTVEACAIDSWPELNKHFPFIYCIESLV-YEHKYSQWETCFDKLEL 151
               F CQHG  EC LN VEAC +D   E    F  I C+E +   E K       +   E+
Sbjct:   110 WEFTCQHGELECRLNMVEACLLDKL-EKEAAFLTIVCMEEMDDMEKKLGPCLQVYAP-EV 167

Query:   152 DPKPIVDCYTSGYGTQLELKYAAETNSLVPPHQYVPWVVVDGQPLYEDYENFISYVCKAY 211
              P+ I++C T   GTQL  + A  T++L PPH+YVPWV+V+ +PL +D    +S VC+ Y
Sbjct:   168 SPESIMECATGKRGTQLMHENAQLTDALHPPHEYVPWVLVNEKPL-KDPSELLSIVCQLY 226

Query:   212 KGNVVPKACSNL 223
             +G   P  CS++
Sbjct:   227 QGTEKPDICSSI 238

GO:0005576 "extracellular region" evidence=IEA

GO:0005764 "lysosome" evidence=ISO;IDA

GO:0015036 "disulfide oxidoreductase activity" evidence=TAS

GO:0016491 "oxidoreductase activity" evidence=IEA

GO:0016667 "oxidoreductase activity, acting on a sulfur group of donors" evidence=ISO

GO:0019886 "antigen processing and presentation of exogenous peptide antigen via MHC class II" evidence=IMP

GO:0042590 "antigen processing and presentation of exogenous peptide antigen via MHC class I" evidence=IMP

GO:0048147 "negative regulation of fibroblast proliferation" evidence=IMP

GO:0050821 "protein stabilization" evidence=IMP

GO:0055114 "oxidation-reduction process" evidence=ISO;TAS

RGD|1310758 Ifi30 "interferon gamma inducible protein 30" [Rattus norvegicus (taxid:10116)]

 Score = 297 (109.6 bits), Expect = 2.5e-26, P = 2.5e-26
 Identities = 70/186 (37%), Positives = 104/186 (55%)

Query:    42 VKLGLYYESLCPYSANFIINYLVKIFEDVDLLSIVDLHLSPWGNAKIRANNST--FDCQH 99
             V + LYYESLC     F++  L   +  + ++ I+++ L P+GNA+ R  + T  F CQH
Sbjct:    59 VNVSLYYESLCGACRYFLVRNLFPTW--LMVMEIMNITLVPYGNAQERNVSGTWEFTCQH 116

Query:   100 GPSECLLNTVEACAIDSWPELNKHFPFIYCIESLVYEHKYSQWETCFDKL--ELDPKPIV 157
             G  EC LN VEAC +D   E    F  I C+E +  E    +   C      E+ P+ I+
Sbjct:   117 GELECKLNKVEACLLDKL-EKEAAFLTIVCMEEM--EDMEKKLGPCLQLYVPEVSPESIM 173

Query:   158 DCYTSGYGTQLELKYAAETNSLVPPHQYVPWVVVDGQPLYEDYENFISYVCKAYKGNVVP 217
             +C T   GT+L  + A  T++L PPH+YVPWV+V+ +PL  D    +S VC+ Y+G   P
Sbjct:   174 ECATGKRGTELMHENAQLTDALQPPHEYVPWVLVNEKPL-TDPSQLLSSVCELYQGTEKP 232

Query:   218 KACSNL 223
               CS++
Sbjct:   233 DICSSM 238

GO:0005576 "extracellular region" evidence=IEA

GO:0005764 "lysosome" evidence=ISO;ISS

GO:0005886 "plasma membrane" evidence=IEA;ISO

GO:0016667 "oxidoreductase activity, acting on a sulfur group of donors" evidence=ISO;ISS

GO:0019886 "antigen processing and presentation of exogenous peptide antigen via MHC class II" evidence=IEA;ISO

GO:0030054 "cell junction" evidence=IEA;ISO

GO:0042590 "antigen processing and presentation of exogenous peptide antigen via MHC class I" evidence=ISO;ISS

GO:0043231 "intracellular membrane-bounded organelle" evidence=ISO

GO:0048147 "negative regulation of fibroblast proliferation" evidence=IEA;ISO

GO:0050821 "protein stabilization" evidence=IEA;ISO

UNIPROTKB|F1PK63 IFI30 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]

 Score = 282 (104.3 bits), Expect = 9.7e-25, P = 9.7e-25
 Identities = 68/185 (36%), Positives = 101/185 (54%)

Query:    42 VKLGLYYESLCPYSANFIINYLVKIFEDVDLLSIVDLHLSPWGNAKIR--ANNSTFDCQH 99
             V + +YYE+LCP    F++  L   +  + +L I+++ L P+GNA  +  +    F CQH
Sbjct:    63 VNVSVYYEALCPGCRAFLVRELFPTW--LMVLEILNVTLVPYGNAHEQNVSGRWEFTCQH 120

Query:   100 GPSECLLNTVEACAIDSWPELNKHFPF--IYCIESLVYEHKYSQWETCFDKLE--LDPKP 155
             G  EC LN VEAC    W +L+K+     I CIE +  +      + C +     + P  
Sbjct:   121 GEQECKLNKVEACL---WDKLDKNLAILIIVCIEEM--DDMEENLKPCMEIYAPTMSPDT 175

Query:   156 IVDCYTSGYGTQLELKYAAETNSLVPPHQYVPWVVVDGQPLYEDYENFISYVCKAYKGNV 215
             I++C     G QL    A  T++L PPH+YVPWVVV+G+PL +D    +S VC+ Y+G  
Sbjct:   176 IMECAVGDRGMQLLHINAQLTDALQPPHEYVPWVVVNGKPL-KDLSQLLSLVCQLYQGEK 234

Query:   216 VPKAC 220
              P AC
Sbjct:   235 -PDAC 238

GO:0050821 "protein stabilization" evidence=IEA

GO:0048147 "negative regulation of fibroblast proliferation" evidence=IEA

GO:0042590 "antigen processing and presentation of exogenous peptide antigen via MHC class I" evidence=IEA

GO:0030054 "cell junction" evidence=IEA

GO:0019886 "antigen processing and presentation of exogenous peptide antigen via MHC class II" evidence=IEA

GO:0016667 "oxidoreductase activity, acting on a sulfur group of donors" evidence=IEA

GO:0005886 "plasma membrane" evidence=IEA

GO:0005764 "lysosome" evidence=IEA

UNIPROTKB|A6QPN6 IFI30 "Gamma-interferon-inducible lysosomal thiol reductase" [Bos taurus (taxid:9913)]

 Score = 280 (103.6 bits), Expect = 1.6e-24, P = 1.6e-24
 Identities = 73/197 (37%), Positives = 106/197 (53%)

Query:    28 VSASRTSPSDVNSKVKLGLYYESLCPYSANFIINYLVKIFEDVDLLSIVDLHLSPWGNAK 87
             + AS   P DV   V + LYYE+LCP    F+I  L   +  + +L I+++ L P+GNA+
Sbjct:    44 LQASPQKP-DV-PLVNVSLYYEALCPGCREFLIRELFPTW--LMVLEILNVTLVPYGNAQ 99

Query:    88 IR--ANNSTFDCQHGPSECLLNTVEACAIDSWPELNKHFPFIYCIESLVYEHKYSQWETC 145
              R  +    F CQHG  ECLLN VEAC +D   E    F  I C+E +  +      + C
Sbjct:   100 ERNVSGKWEFTCQHGERECLLNKVEACLLDQL-EQKIAFLTIVCLEEM--DDMEQNLKPC 156

Query:   146 FDKL--ELDPKPIVDCYTSGYGTQLELKYAAETNSLVPPHQYVPWVVVDGQPLYEDYENF 203
                   ++    I++C T   G QL    A  T++L PPH+YVPWVVV+G+ + +D E+ 
Sbjct:   157 LQIYAPKVSADSIMECATGNRGMQLLHINAQLTDALRPPHKYVPWVVVNGEHM-KDAEHL 215

Query:   204 ISYVCKAYKGNVVPKAC 220
             +  VC+ Y+G   P  C
Sbjct:   216 LHLVCRLYQGQK-PDVC 231

GO:0005764 "lysosome" evidence=ISS

GO:0042590 "antigen processing and presentation of exogenous peptide antigen via MHC class I" evidence=ISS

GO:0016667 "oxidoreductase activity, acting on a sulfur group of donors" evidence=ISS

GO:0005576 "extracellular region" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input: GSVIVG00024041001 SubName- Full=Chromosome chr6 scaffold_3, whole genome shotgun sequence; (259 aa) (Vitis vinifera)

Predicted Functional Partners:

Sorry, there are no predicted associations at the current settings.

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	244
pfam03227	109	pfam03227, GILT, Gamma interferon inducible lysoso	1e-33

>gnl|CDD|217437 pfam03227, GILT, Gamma interferon inducible lysosomal thiol reductase (GILT)

 Score =  117 bits (294), Expect = 1e-33
 Identities = 45/114 (39%), Positives = 60/114 (52%), Gaps = 7/114 (6%)

Query: 42  VKLGLYYESLCPYSANFIINYLVKIFEDVDLLSIVDLHLSPWGNAKIRANNSTFDCQHGP 101
           V + LYYESLCP    FI N L   + D+DLL I DL L P+G A+   + S   CQHGP
Sbjct: 1   VNITLYYESLCPDCQKFIRNQLYPAWFDLDLLDITDLKLVPFGKARCVDDGSVCTCQHGP 60

Query: 102 SECLLNTVEACAIDSWPELNKHFPFIYCIESLVYEHKYSQWE--TCFDKLELDP 153
            EC LN ++AC I++ P      PFI C++      K +  E   C  +   + 
Sbjct: 61  EECKLNALQACVIETLPNQKLQLPFIRCMQG-----KTNYSEGFKCLKEYGPEK 109

This family includes the two characterized human gamma-interferon-inducible lysosomal thiol reductase (GILT) sequences. It also contains several other eukaryotic putative proteins with similarity to GILT. The aligned region contains three conserved cysteine residues. In addition, the two GILT sequences possess a C-X(2)-C motif that is shared by some of the other sequences in the family. This motif is thought to be associated with disulphide bond reduction. Length = 109

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	244
KOG3160	220	consensus Gamma-interferon inducible lysosomal thi	100.0
PF03227	108	GILT: Gamma interferon inducible lysosomal thiol r	100.0
cd03023	154	DsbA_Com1_like DsbA family, Com1-like subfamily; c	99.05
PF13462	162	Thioredoxin_4: Thioredoxin; PDB: 3FEU_A 3HZ8_A 3DV	98.83
cd03019	178	DsbA_DsbA DsbA family, DsbA subfamily; DsbA is a m	98.79
PRK10954	207	periplasmic protein disulfide isomerase I; Provisi	98.44
cd03024	201	DsbA_FrnE DsbA family, FrnE subfamily; FrnE is a D	97.94
cd03025	193	DsbA_FrnE_like DsbA family, FrnE-like subfamily; c	97.64
PF01323	193	DSBA: DSBA-like thioredoxin domain; InterPro: IPR0	97.62
PF13743	176	Thioredoxin_5: Thioredoxin; PDB: 3KZQ_C.	97.52
cd03022	192	DsbA_HCCA_Iso DsbA family, 2-hydroxychromene-2-car	97.48
COG1651	244	DsbG Protein-disulfide isomerase [Posttranslationa	97.29
COG2761	225	FrnE Predicted dithiol-disulfide isomerase involve	96.72
cd02972	98	DsbA_family DsbA family; consists of DsbA and DsbA	96.22
PRK10877	232	protein disulfide isomerase II DsbC; Provisional	95.64
PRK11657	251	dsbG disulfide isomerase/thiol-disulfide oxidase;	93.21
PF14595	129	Thioredoxin_9: Thioredoxin; PDB: 1Z6N_A.	88.21
cd03020	197	DsbA_DsbC_DsbG DsbA family, DsbC and DsbG subfamil	87.1
cd03021	209	DsbA_GSTK DsbA family, Glutathione (GSH) S-transfe	84.85
cd02973	67	TRX_GRX_like Thioredoxin (TRX)-Glutaredoxin (GRX)-	82.66
TIGR00411	82	redox_disulf_1 small redox-active disulfide protei	82.36

>KOG3160 consensus Gamma-interferon inducible lysosomal thiol reductase [Posttranslational modification, protein turnover, chaperones]

Probab=100.00  E-value=1.1e-52  Score=366.88  Aligned_cols=202  Identities=45%  Similarity=0.856  Sum_probs=174.7

Q ss_pred             ccchhHHHHHHHHHHHhhhccCCCCCCCCCCCCCCCceEEEEEEEeCChhhHHHHHHHHHHHHhhccCCcceeEEEEeee
Q 026069            5 SYSSTKALSLVFYITLFCFLSGSVSASRTSPSDVNSKVKLGLYYESLCPYSANFIINYLVKIFEDVDLLSIVDLHLSPWG   84 (244)
Q Consensus         5 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kV~V~vYyESlCPds~~Fi~~qL~P~~~~~~l~~~idl~lvP~G   84 (244)
                      .|.+...+++|+.+.+++..-+-+.+    .+.+.+||+|++|||||||||++||++||.|+|+. .+.+++||++||||
T Consensus         8 ~~~~~~~~~~F~c~~~~~~~~~~~~~----~~~~~~~v~ItlyyEaLCPdc~~Fi~~qL~p~~~~-~~~~~idl~lvPfG   82 (220)
T KOG3160|consen    8 KYPSLAILSFFVCLLLFSFLLGILVA----KGSQAPKVNITLYYEALCPDCSKFIRNQLYPFFDN-LLPSILDLTLVPFG   82 (220)
T ss_pred             hcccchhhheeeecchHhhhhhheee----ccccCCeeEEEEEEEecCccHHHHHHHHHHHHHhh-cccceeEEEEEccC
Confidence            44555555555544444443222222    34555699999999999999999999999999997 47999999999999


Q ss_pred             cceecCCCCceeecCChhhhccchhhhhhcccccccccccchhhhhhhhcccCchhhHHHHHHhcCCChhhhhhcccCch
Q 026069           85 NAKIRANNSTFDCQHGPSECLLNTVEACAIDSWPELNKHFPFIYCIESLVYEHKYSQWETCFDKLELDPKPIVDCYTSGY  164 (244)
Q Consensus        85 ~a~~~~~~~~f~CQHG~~EC~gN~lqaCai~~~~~~~~~~~fI~C~~~~~~~~~~~~~~~Ca~~~gld~~~I~~C~~~~~  164 (244)
                      ||+..+++++|+||||+.||.+|++|+|+|++++++..+++||.||++.   .....+.+|++..+.++..|++|++|++
T Consensus        83 na~~~~~~~~~~CqHG~~EC~lN~LqaCvI~~l~~~~~~l~~i~C~~~~---~~~~~~~~C~~~~~~~~~~i~~Ca~s~~  159 (220)
T KOG3160|consen   83 NAQCRNDGGTFTCQHGEEECKLNKLQACVIDTLPDQSDQLPFIRCIQGK---QKLSEAEDCLEKYGLNEKKIRECANSRL  159 (220)
T ss_pred             CceeecCceEEEecCCHHHHhhhHHHHHHHHhhhchHhhhceehhhhcc---cchhHHHHHHhhcCCCHHHHHHHhcCch
Confidence            9998876699999999999999999999999999999999999999983   2345577899999999999999999999


Q ss_pred             hhHHHHHHHHHhhcCCCCCceeeEEEECCeechhhHhHHHHHHHHhhcCC
Q 026069          165 GTQLELKYAAETNSLVPPHQYVPWVVVDGQPLYEDYENFISYVCKAYKGN  214 (244)
Q Consensus       165 G~~Ll~~~~~~T~~l~P~~~~vP~I~ING~~~~~a~~nL~~~IC~~y~g~  214 (244)
                      |.+|+.+++.+|..+.|+|.|||||+|||++..++..||.+.+|..|.+.
T Consensus       160 g~~L~~~~~~~T~~~~p~~~~VPwi~vNg~~~~~~~~~l~~~~C~~~~~~  209 (220)
T KOG3160|consen  160 GAKLLLKYAQETAALAPPHPWVPWILVNGQPLQDAEQDLVTLLCEAYKGK  209 (220)
T ss_pred             HHHHHHHHHHhhcccCCCCCCcCeEEECCcchHHHHHHHHHHHHHHHhhc
Confidence            99999999999999999999999999999999888888999999999876

>PF03227 GILT: Gamma interferon inducible lysosomal thiol reductase (GILT); InterPro: IPR004911 This family includes the two characterised human gamma-interferon-inducible lysosomal thiol reductase (GILT) sequences [, ]

Probab=100.00  E-value=3.6e-37  Score=242.46  Aligned_cols=107  Identities=40%  Similarity=0.767  Sum_probs=94.4

Q ss_pred             eEEEEEEEeCChhhHHHHHHHHHHHHhhccCCcceeEEEEeeecceecCCCCceeecCChhhhccchhhhhhcccccccc
Q 026069           42 VKLGLYYESLCPYSANFIINYLVKIFEDVDLLSIVDLHLSPWGNAKIRANNSTFDCQHGPSECLLNTVEACAIDSWPELN  121 (244)
Q Consensus        42 V~V~vYyESlCPds~~Fi~~qL~P~~~~~~l~~~idl~lvP~G~a~~~~~~~~f~CQHG~~EC~gN~lqaCai~~~~~~~  121 (244)
                      |+|+|||||+||||++||++||.|+|..+++.++|||+|||||||+...++.+|+|||||.||+||++|+|+++++++..
T Consensus         1 V~v~vyyESlCPd~~~fi~~~L~p~~~~~~~~~~~~l~lvP~G~a~~~~~~~~~~CqHG~~EC~gN~~q~C~l~~~~~~~   80 (108)
T PF03227_consen    1 VNVEVYYESLCPDCRRFITNQLFPVWTYEKLSDIMNLTLVPFGNAKVSSSGNEFTCQHGPDECYGNKLQACALKHLPDTN   80 (108)
T ss_pred             CEEEEEEEecCHhHHHHHHHHHHHHHHHhhccceEEEEEEEEeccEEecCCceeecCCcHHHHHcCHHHHhHHHhcCChh
Confidence            78999999999999999999999988555699999999999999998765457999999999999999999999999888


Q ss_pred             cccchhhhhhhhcccCchhhHHHHHHhcCC
Q 026069          122 KHFPFIYCIESLVYEHKYSQWETCFDKLEL  151 (244)
Q Consensus       122 ~~~~fI~C~~~~~~~~~~~~~~~Ca~~~gl  151 (244)
                      .+|+||.||++....  ...+. |+++.++
T Consensus        81 ~~~~~i~Cm~~~~~~--~~~~~-Ca~~~~~  107 (108)
T PF03227_consen   81 AALPFIACMESSQDF--PKAIK-CAKKYGI  107 (108)
T ss_pred             hhcCEEEEEcCCCCC--chhhh-hHHhcCC
Confidence            889999999988532  22333 9998875

It also contains several other eukaryotic putative proteins with similarity to GILT []. The aligned region contains three conserved cysteine residues. In addition, the two GILT sequences possess a C-X(2)-C motif that is shared by some of the other sequences in the family. This motif is thought to be associated with disulphide bond reduction.

>cd03023 DsbA_Com1_like DsbA family, Com1-like subfamily; composed of proteins similar to Com1, a 27-kDa outer membrane-associated immunoreactive protein originally found in both acute and chronic disease strains of the pathogenic bacteria Coxiella burnetti

Probab=99.05  E-value=3.2e-09  Score=85.04  Aligned_cols=149  Identities=12%  Similarity=0.049  Sum_probs=98.4

Q ss_pred             CCCCceEEEEEEEeCChhhHHHHHHHHHHHHhhccCCcceeEEEEeeecceecCCCCceeecCChhhhccchhhhhhccc
Q 026069           37 DVNSKVKLGLYYESLCPYSANFIINYLVKIFEDVDLLSIVDLHLSPWGNAKIRANNSTFDCQHGPSECLLNTVEACAIDS  116 (244)
Q Consensus        37 ~~~~kV~V~vYyESlCPds~~Fi~~qL~P~~~~~~l~~~idl~lvP~G~a~~~~~~~~f~CQHG~~EC~gN~lqaCai~~  116 (244)
                      ..+.+++|.+|+.-.||+|++| ...|.+.+..  ..+ +++.++||.-....   .          -..-..-.|+...
T Consensus         2 ~~~a~~~i~~f~D~~Cp~C~~~-~~~l~~~~~~--~~~-~~~~~~~~p~~~~~---~----------~~~~~~~~~~~~~   64 (154)
T cd03023           2 NPNGDVTIVEFFDYNCGYCKKL-APELEKLLKE--DPD-VRVVFKEFPILGES---S----------VLAARVALAVWKN   64 (154)
T ss_pred             CCCCCEEEEEEECCCChhHHHh-hHHHHHHHHH--CCC-ceEEEEeCCccCcc---h----------HHHHHHHHHHHHh
Confidence            4568999999999999999999 4667666654  443 66777666321100   0          0111122233221


Q ss_pred             ccccccccchhhhhhhhcccCchhhHHHHHHhcCCChhhhhhcccCchhhHHHHHHHHHhhcCCCCCceeeEEEECCeec
Q 026069          117 WPELNKHFPFIYCIESLVYEHKYSQWETCFDKLELDPKPIVDCYTSGYGTQLELKYAAETNSLVPPHQYVPWVVVDGQPL  196 (244)
Q Consensus       117 ~~~~~~~~~fI~C~~~~~~~~~~~~~~~Ca~~~gld~~~I~~C~~~~~G~~Ll~~~~~~T~~l~P~~~~vP~I~ING~~~  196 (244)
                        .+..+++|..=+.........+.....+...|++.+.+.+|.++.+....+.+..+....+.  +..+||++|||+..
T Consensus        65 --~~~~~~~~~~~lf~~~~~~~~~~l~~~a~~~gl~~~~~~~~~~~~~~~~~~~~~~~~~~~~g--i~gtPt~~v~g~~~  140 (154)
T cd03023          65 --GPGKYLEFHNALMATRGRLNEESLLRIAKKAGLDEAKLKKDMDDPEIEATIDKNRQLARALG--ITGTPAFIIGDTVI  140 (154)
T ss_pred             --ChhHHHHHHHHHHhcCCCCCHHHHHHHHHHcCCCHHHHHHHhhChHHHHHHHHHHHHHHHcC--CCcCCeEEECCEEe
Confidence              33456777655544332122234667889999999999999999888888888888777664  89999999999875


Q ss_pred             h--hhHhHHHHH
Q 026069          197 Y--EDYENFISY  206 (244)
Q Consensus       197 ~--~a~~nL~~~  206 (244)
                      .  ...+.|.+.
T Consensus       141 ~G~~~~~~l~~~  152 (154)
T cd03023         141 PGAVPADTLKEA  152 (154)
T ss_pred             cCCCCHHHHHHH
Confidence            3  234555544

It contains a CXXC motif, assumed to be imbedded in a DsbA-like structure. Its homology to DsbA suggests that the protein is a protein disulfide oxidoreductase. The role of such a protein in pathogenesis is unknown.

>PF13462 Thioredoxin_4: Thioredoxin; PDB: 3FEU_A 3HZ8_A 3DVW_A 3A3T_E 3GMF_A 1Z6M_A 3GYK_C 3BCK_A 3BD2_A 3BCI_A

Probab=98.83  E-value=1.7e-08  Score=82.10  Aligned_cols=153  Identities=12%  Similarity=0.119  Sum_probs=99.4

Q ss_pred             CCCCCCCCCceEEEEEEEeCChhhHHHHHHHHHHHHhhccC--CcceeEEEEeeecceecCCCCceeecCChhhhccchh
Q 026069           32 RTSPSDVNSKVKLGLYYESLCPYSANFIINYLVKIFEDVDL--LSIVDLHLSPWGNAKIRANNSTFDCQHGPSECLLNTV  109 (244)
Q Consensus        32 ~~~~~~~~~kV~V~vYyESlCPds~~Fi~~qL~P~~~~~~l--~~~idl~lvP~G~a~~~~~~~~f~CQHG~~EC~gN~l  109 (244)
                      +...|..+.++.|++|..-.||+|++|. ..|.+++++  +  .+.+.|.++|+--....             ...+-.+
T Consensus         4 ~~~~G~~~a~~~v~~f~d~~Cp~C~~~~-~~~~~~~~~--~i~~~~v~~~~~~~~~~~~~-------------~~~a~~~   67 (162)
T PF13462_consen    4 DPTIGNPDAPITVTEFFDFQCPHCAKFH-EELEKLLKK--YIDPGKVKFVFRPVPLDKHS-------------SLRAAMA   67 (162)
T ss_dssp             SEEES-TTTSEEEEEEE-TTSHHHHHHH-HHHHHHHHH--HTTTTTEEEEEEESSSSHHH-------------HHHHHHH
T ss_pred             CCeecCCCCCeEEEEEECCCCHhHHHHH-HHHhhhhhh--ccCCCceEEEEEEccccchh-------------HHHHHHH
Confidence            3346788999999999999999999994 556687776  6  67889999888322211             3345666


Q ss_pred             hhhhcccccccccccchhhhhhhhcccCchhhHHHHHHhcCCChhhhhhcccCchhhHHHHHHHHHhhcCCCCCceeeEE
Q 026069          110 EACAIDSWPELNKHFPFIYCIESLVYEHKYSQWETCFDKLELDPKPIVDCYTSGYGTQLELKYAAETNSLVPPHQYVPWV  189 (244)
Q Consensus       110 qaCai~~~~~~~~~~~fI~C~~~~~~~~~~~~~~~Ca~~~gld~~~I~~C~~~~~G~~Ll~~~~~~T~~l~P~~~~vP~I  189 (244)
                      ..|+.+.  + +.++.+..-+.........  .+.=+...+.+.+.+.+|+++..-...+.+..+.+...  +++.+|+|
T Consensus        68 ~~~~~~~--~-~~~~~~~~~~~~~~~~~~~--~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~i~~tPt~  140 (162)
T PF13462_consen   68 AECVADQ--G-KYFWFFHELLFSQQENFEN--KKDIAANAGGSNEQFNKCLNSDEIKAQLEADSQLARQL--GITGTPTF  140 (162)
T ss_dssp             HHHHHHH--T-HHHHHHHHHHHHHCHSTSS--HHHHHHHTTSHHHHHHHHHTSHHHHHHHHHHHHHHHHH--T-SSSSEE
T ss_pred             HHHHHHH--h-HHHHHHHHHHHHhhhccch--hHHHHHHcCCCHHHHHHHhhchHHHHHHHHHHHHHHHc--CCccccEE
Confidence            7777554  2 3444455455444321111  12222344555778999999887677766666666554  48999999


Q ss_pred             EECCeech--hhHhHHHHHH
Q 026069          190 VVDGQPLY--EDYENFISYV  207 (244)
Q Consensus       190 ~ING~~~~--~a~~nL~~~I  207 (244)
                      +|||+.+.  ...++|..+|
T Consensus       141 ~inG~~~~~~~~~~~l~~~I  160 (162)
T PF13462_consen  141 FINGKYVVGPYTIEELKELI  160 (162)
T ss_dssp             EETTCEEETTTSHHHHHHHH
T ss_pred             EECCEEeCCCCCHHHHHHHH
Confidence            99999874  2566666655

...

>cd03019 DsbA_DsbA DsbA family, DsbA subfamily; DsbA is a monomeric thiol disulfide oxidoreductase protein containing a redox active CXXC motif imbedded in a TRX fold

Probab=98.79  E-value=4.7e-08  Score=80.84  Aligned_cols=136  Identities=18%  Similarity=0.070  Sum_probs=94.7

Q ss_pred             CCceEEEEEEEeCChhhHHHHHHHHHHHHhhccCCcceeEEEEeeecceecCCCCceeecCChhhhccchhhhhhccccc
Q 026069           39 NSKVKLGLYYESLCPYSANFIINYLVKIFEDVDLLSIVDLHLSPWGNAKIRANNSTFDCQHGPSECLLNTVEACAIDSWP  118 (244)
Q Consensus        39 ~~kV~V~vYyESlCPds~~Fi~~qL~P~~~~~~l~~~idl~lvP~G~a~~~~~~~~f~CQHG~~EC~gN~lqaCai~~~~  118 (244)
                      +.+|+|.+|+.-.||.|++| ...+.+.+.+  ..+.+.|+++|+........             ...+....+..   
T Consensus        14 ~~~~~i~~f~D~~Cp~C~~~-~~~~~~~~~~--~~~~v~~~~~~~~~~~~~~~-------------~aa~a~~aa~~---   74 (178)
T cd03019          14 SGKPEVIEFFSYGCPHCYNF-EPILEAWVKK--LPKDVKFEKVPVVFGGGEGE-------------PLARAFYAAEA---   74 (178)
T ss_pred             CCCcEEEEEECCCCcchhhh-hHHHHHHHHh--CCCCceEEEcCCccccccch-------------HHHHHHHHHHH---
Confidence            78999999999999999999 5778888887  67889999999864321100             01122222211   


Q ss_pred             ccccccchhhhhhhhcc-----cCchhhHHHHHHhcCCChhhhhhcccCchhhHHHHHHHHHhhcCCCCCceeeEEEECC
Q 026069          119 ELNKHFPFIYCIESLVY-----EHKYSQWETCFDKLELDPKPIVDCYTSGYGTQLELKYAAETNSLVPPHQYVPWVVVDG  193 (244)
Q Consensus       119 ~~~~~~~fI~C~~~~~~-----~~~~~~~~~Ca~~~gld~~~I~~C~~~~~G~~Ll~~~~~~T~~l~P~~~~vP~I~ING  193 (244)
                       ...++.|..=+.....     ....+.+...+...|++.+.+.+|.++++-...+.+..+....+  ++..+||++|||
T Consensus        75 -~~~~~~~~~~lf~~~~~~~~~~~~~~~l~~~a~~~Gl~~~~~~~~~~s~~~~~~i~~~~~~~~~~--gi~gTPt~iInG  151 (178)
T cd03019          75 -LGLEDKLHAALFEAIHEKRKRLLDPDDIRKIFLSQGVDKKKFDAAYNSFSVKALVAKAEKLAKKY--KITGVPAFVVNG  151 (178)
T ss_pred             -cCcHhhhhHHHHHHHHHhCCCCCCHHHHHHHHHHhCCCHHHHHHHHhCHHHHHHHHHHHHHHHHc--CCCCCCeEEECC
Confidence             1223344333332211     11234578999999999999999999888777777777776655  489999999999


Q ss_pred             eec
Q 026069          194 QPL  196 (244)
Q Consensus       194 ~~~  196 (244)
                      +..
T Consensus       152 ~~~  154 (178)
T cd03019         152 KYV  154 (178)
T ss_pred             EEE
Confidence            865

It is involved in the oxidative protein folding pathway in prokaryotes, and is the strongest thiol oxidant known, due to the unusual stability of the thiolate anion form of the first cysteine in the CXXC motif. The highly unstable oxidized form of DsbA directly donates disulfide bonds to reduced proteins secreted into the bacterial periplasm. This rapid and unidirectional process helps to catalyze the folding of newly-synthesized polypeptides. To regain catalytic activity, reduced DsbA is then reoxidized by the membrane protein DsbB, which generates its disulfides from oxidized quinones, which in turn are reoxidized by the electron transport chain.

>PRK10954 periplasmic protein disulfide isomerase I; Provisional

Probab=98.44  E-value=2.6e-06  Score=73.67  Aligned_cols=141  Identities=12%  Similarity=0.045  Sum_probs=83.6

Q ss_pred             CCCceEEEEEEEeCChhhHHHHHHHH--HHHHhhccCCcceeEEEEeeecceecCCCCceeecCChhhhccchhhhhhcc
Q 026069           38 VNSKVKLGLYYESLCPYSANFIINYL--VKIFEDVDLLSIVDLHLSPWGNAKIRANNSTFDCQHGPSECLLNTVEACAID  115 (244)
Q Consensus        38 ~~~kV~V~vYyESlCPds~~Fi~~qL--~P~~~~~~l~~~idl~lvP~G~a~~~~~~~~f~CQHG~~EC~gN~lqaCai~  115 (244)
                      ...+++|..|+.=.||+|.+|- ..|  .+.|.+ .+.+-+.|..+|+.-......          .--.......|+-.
T Consensus        35 ~~~~~~VvEffdy~CphC~~~~-~~l~~~~~~~~-~~~~~v~~~~~~~~f~~~~~~----------~~~~a~~~a~~~~~  102 (207)
T PRK10954         35 VAGEPQVLEFFSFYCPHCYQFE-EVYHVSDNVKK-KLPEGTKMTKYHVEFLGPLGK----------ELTQAWAVAMALGV  102 (207)
T ss_pred             CCCCCeEEEEeCCCCccHHHhc-ccccchHHHHH-hCCCCCeEEEecccccchhhH----------HHHHHHHHHHHhCc
Confidence            3567889999999999999993 333  356655 466666666655421110000          00001111111100


Q ss_pred             ccccccccc-chhhhhhhhcccCchhhHHHHHHhcCCChhhhhhcccCchhhHHHHHHHHHhhcCCCCCceeeEEEECCe
Q 026069          116 SWPELNKHF-PFIYCIESLVYEHKYSQWETCFDKLELDPKPIVDCYTSGYGTQLELKYAAETNSLVPPHQYVPWVVVDGQ  194 (244)
Q Consensus       116 ~~~~~~~~~-~fI~C~~~~~~~~~~~~~~~Ca~~~gld~~~I~~C~~~~~G~~Ll~~~~~~T~~l~P~~~~vP~I~ING~  194 (244)
                          ..+.+ .+..=++..........+...+...|+|.+.+.+|.++..-...+.+..+.+..+  +++.||+++|||+
T Consensus       103 ----~~k~~~~lf~~i~~~~~~~~~~~L~~~a~~~Gld~~~f~~~l~s~~~~~~v~~~~~~a~~~--gI~gtPtfiInGk  176 (207)
T PRK10954        103 ----EDKVTPPLFEGVQKTQTIQSAADIRDVFIKAGVKGEDYDAAWNSFVVKSLVAQQEKAAADL--QLRGVPAMFVNGK  176 (207)
T ss_pred             ----HHHHHHHHHHHHHccCCCCCHHHHHHHHHHcCCCHHHHHHHHhChHHHHHHHHHHHHHHHc--CCCCCCEEEECCE
Confidence                01111 1111122221112334566788899999999999999988777777777776665  4899999999999


Q ss_pred             ec
Q 026069          195 PL  196 (244)
Q Consensus       195 ~~  196 (244)
                      +.
T Consensus       177 y~  178 (207)
T PRK10954        177 YM  178 (207)
T ss_pred             EE
Confidence            74

>cd03024 DsbA_FrnE DsbA family, FrnE subfamily; FrnE is a DsbA-like protein containing a CXXC motif

Probab=97.94  E-value=0.00017  Score=60.96  Aligned_cols=159  Identities=15%  Similarity=0.122  Sum_probs=99.3

Q ss_pred             EEEEEEeCChhhHHHHHHHHHHHHhhccCC--cceeEEEEeeecceecCCCC----c-eeecCCh---------------
Q 026069           44 LGLYYESLCPYSANFIINYLVKIFEDVDLL--SIVDLHLSPWGNAKIRANNS----T-FDCQHGP---------------  101 (244)
Q Consensus        44 V~vYyESlCPds~~Fi~~qL~P~~~~~~l~--~~idl~lvP~G~a~~~~~~~----~-f~CQHG~---------------  101 (244)
                      |++|+.-.||.|--. ..+|..+.+.  +.  .-++|+++||+-.......+    . +.=+||.               
T Consensus         1 I~~~~D~~cP~cyl~-~~~l~~~~~~--~~~~~~~~v~~~p~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~a   77 (201)
T cd03024           1 IDIWSDVVCPWCYIG-KRRLEKALAE--LGDEVDVEIEWRPFELNPDMPPEGEDRREYLARKYGSTAEQAAAMRRVEAAA   77 (201)
T ss_pred             CeEEecCcCccHHHH-HHHHHHHHHh--CCCCCceEEEEeeeeeCCCCCCCCCCHHHHHHHHhCCCHHHHHHHHHHHHHH
Confidence            579999999999877 5778777765  43  35999999996332211000    0 0001110               


Q ss_pred             ----------hhhccchhhhhhcccc-cccccccchhhhhhhhcc-----cCchhhHHHHHHhcCCChhhhhhcccCchh
Q 026069          102 ----------SECLLNTVEACAIDSW-PELNKHFPFIYCIESLVY-----EHKYSQWETCFDKLELDPKPIVDCYTSGYG  165 (244)
Q Consensus       102 ----------~EC~gN~lqaCai~~~-~~~~~~~~fI~C~~~~~~-----~~~~~~~~~Ca~~~gld~~~I~~C~~~~~G  165 (244)
                                ..-..|...+|.+-.. .....+++|..-+.....     ....+.....+...|+|.+.+.++.++.+.
T Consensus        78 ~~~gi~~~~~~~~~~~s~~a~~~~~~a~~~~~~~~~~~~lf~a~~~~~~~i~~~~~l~~~a~~~Gld~~~~~~~~~~~~~  157 (201)
T cd03024          78 AAEGLEFDFDRVRPPNTFDAHRLIHLAKEQGKQDALVEALFRAYFTEGKDIGDRDVLVDLAEEAGLDAAEARAVLASDEY  157 (201)
T ss_pred             HHcCCcccCCCCccCCcHHHHHHHHHHhccCcHHHHHHHHHHHHHccCCCCCCHHHHHHHHHHcCCCHHHHHHHhcCccc
Confidence                      0001244444432211 122356677766664422     122345678899999999999999999988


Q ss_pred             hHHHHHHHHHhhcCCCCCceeeEEEECCeec--h-hhHhHHHHHH
Q 026069          166 TQLELKYAAETNSLVPPHQYVPWVVVDGQPL--Y-EDYENFISYV  207 (244)
Q Consensus       166 ~~Ll~~~~~~T~~l~P~~~~vP~I~ING~~~--~-~a~~nL~~~I  207 (244)
                      ++.+.+..+...++  ++..+||++|||+..  + ...+.|.++|
T Consensus       158 ~~~~~~~~~~a~~~--gv~G~Pt~vv~g~~~~~G~~~~~~~~~~i  200 (201)
T cd03024         158 ADEVRADEARARQL--GISGVPFFVFNGKYAVSGAQPPEVFLQAL  200 (201)
T ss_pred             chHHHHHHHHHHHC--CCCcCCEEEECCeEeecCCCCHHHHHHHh
Confidence            88888888777665  489999999999753  1 2345555543

It is presumed to be a thiol oxidoreductase involved in polyketide biosynthesis, specifically in the production of the aromatic antibiotics frenolicin and nanaomycins.

>cd03025 DsbA_FrnE_like DsbA family, FrnE-like subfamily; composed of uncharacterized proteins containing a CXXC motif with similarity to DsbA and FrnE

Probab=97.64  E-value=0.00034  Score=58.61  Aligned_cols=148  Identities=15%  Similarity=0.116  Sum_probs=92.4

Q ss_pred             eEEEEEEEeCChhhHHHHHHHHHHHHhhccCCcceeEEEEeeecceecCCC-------------------CceeecCChh
Q 026069           42 VKLGLYYESLCPYSANFIINYLVKIFEDVDLLSIVDLHLSPWGNAKIRANN-------------------STFDCQHGPS  102 (244)
Q Consensus        42 V~V~vYyESlCPds~~Fi~~qL~P~~~~~~l~~~idl~lvP~G~a~~~~~~-------------------~~f~CQHG~~  102 (244)
                      ++|.+|+.-+||.|-.. ..+|..+.+.  +...++|++++++=.......                   .+..-..++.
T Consensus         1 ~~i~~~~D~~cp~c~~~-~~~l~~l~~~--~~~~~~v~~~~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~   77 (193)
T cd03025           1 LELYYFIDPLCGWCYGF-EPLLEKLKEE--YGGGIEVELHLGGLLPGNNARQITKQWRIYVHWHKARIALTGQPFGEDYL   77 (193)
T ss_pred             CeEEEEECCCCchhhCc-hHHHHHHHHH--hCCCceEEEEeccccCCCCCCCcchHHHHHHhHHHHHHHhcCCccCchhH
Confidence            47899999999999877 4566666665  544588888877643321110                   0011111111


Q ss_pred             h---hccchhhhhhccc---ccccccccchhhhhhhhcc-----cCchhhHHHHHHhcCCChhhhhhcccCchhhHHHHH
Q 026069          103 E---CLLNTVEACAIDS---WPELNKHFPFIYCIESLVY-----EHKYSQWETCFDKLELDPKPIVDCYTSGYGTQLELK  171 (244)
Q Consensus       103 E---C~gN~lqaCai~~---~~~~~~~~~fI~C~~~~~~-----~~~~~~~~~Ca~~~gld~~~I~~C~~~~~G~~Ll~~  171 (244)
                      +   --.|...++..-.   .........|+.-++....     .+..+.....+.+.|+|.+.+.++.++.+.+..+.+
T Consensus        78 ~~~~~~~~s~~a~~~~~aa~~~~~~~~~~~~~~l~~a~~~~~~~i~~~~~l~~ia~~~Gld~~~~~~~~~s~~~~~~l~~  157 (193)
T cd03025          78 ELLLFDLDSAPASRAIKAARLQGPERLLEMLKAIQRAHYVEGRDLADTEVLRELAIELGLDVEEFLEDFQSDEAKQAIQE  157 (193)
T ss_pred             hcccCCCCchHHHHHHHHHHHhCcchHHHHHHHHHHHHHHcCCCCCCHHHHHHHHHHcCCCHHHHHHHHcChHHHHHHHH
Confidence            0   0012222221111   1122356677777655321     223345778999999999999999999999999888


Q ss_pred             HHHHhhcCCCCCceeeEEEECCe
Q 026069          172 YAAETNSLVPPHQYVPWVVVDGQ  194 (244)
Q Consensus       172 ~~~~T~~l~P~~~~vP~I~ING~  194 (244)
                      ..+...++.  +..+||++|++.
T Consensus       158 ~~~~a~~~g--v~g~Ptfvv~~~  178 (193)
T cd03025         158 DQKLARELG--INGFPTLVLEDD  178 (193)
T ss_pred             HHHHHHHcC--CCccCEEEEEeC
Confidence            888877664  899999999764

FrnE is presumed to be a thiol oxidoreductase involved in polyketide biosynthesis, specifically in the production of the aromatic antibiotics frenolicin and nanaomycins.

>PF01323 DSBA: DSBA-like thioredoxin domain; InterPro: IPR001853 DSBA is a sub-family of the Thioredoxin family []

Probab=97.62  E-value=0.00021  Score=59.72  Aligned_cols=157  Identities=15%  Similarity=0.114  Sum_probs=89.8

Q ss_pred             EEEEEEEeCChhhHHHHHHHHHHHHhhccCCcceeEEEEeeeccee---cCCC--Cc--------------------eee
Q 026069           43 KLGLYYESLCPYSANFIINYLVKIFEDVDLLSIVDLHLSPWGNAKI---RANN--ST--------------------FDC   97 (244)
Q Consensus        43 ~V~vYyESlCPds~~Fi~~qL~P~~~~~~l~~~idl~lvP~G~a~~---~~~~--~~--------------------f~C   97 (244)
                      +|++|+.-.||.|-.+ ...|..+...  ..+ ++|++.||.-...   ..+.  ..                    +.-
T Consensus         1 ~i~~~~D~~Cp~cy~~-~~~l~~l~~~--~~~-~~i~~~p~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~gi~~   76 (193)
T PF01323_consen    1 TIEFFFDFICPWCYLA-SPRLRKLRAE--YPD-VEIEWRPFPLRPDMRRSGGAPPAEDPAKAEYMFQDLERWARRYGIPF   76 (193)
T ss_dssp             EEEEEEBTTBHHHHHH-HHHHHHHHHH--HTT-CEEEEEEESSSTHHHHCT-SCGCGSHHHHHHHHHHHHHHHHHHT--T
T ss_pred             CEEEEEeCCCHHHHHH-HHHHHHHHHH--hcC-CcEEEeccccccccccCCCCCcccChhHHHHHHHHHHHHHHHhcCcc
Confidence            5899999999999988 4566666664  323 9999999963222   1110  01                    000


Q ss_pred             cCChhhhccchhhhhhc-ccccccccccchhhhhhhh-----cccCchhhHHHHHHhcCCChhhhhhcccCchhhHHHHH
Q 026069           98 QHGPSECLLNTVEACAI-DSWPELNKHFPFIYCIESL-----VYEHKYSQWETCFDKLELDPKPIVDCYTSGYGTQLELK  171 (244)
Q Consensus        98 QHG~~EC~gN~lqaCai-~~~~~~~~~~~fI~C~~~~-----~~~~~~~~~~~Ca~~~gld~~~I~~C~~~~~G~~Ll~~  171 (244)
                      ...+.. .+|...+..+ ...........+..=+...     .+.+..+.+...+...|+|.+.+.+-.++..++..+.+
T Consensus        77 ~~~~~~-~~~s~~a~~~~~~a~~~~~~~~~~~al~~a~~~~~~~i~~~~vl~~~~~~~Gld~~~~~~~~~~~~~~~~~~~  155 (193)
T PF01323_consen   77 NFPPPF-PGNSRPAHRAAYAAQEQGKADAFADALFRAYFVEGRDISDPDVLAEIAEEAGLDPDEFDAALDSPEVKAALEE  155 (193)
T ss_dssp             BTSSTH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSST-TSSHHHHHHHHHHTT--HHHHHHHHTSHHHHHHHHH
T ss_pred             cCCchh-hhhhHHHHHHHHHHHHhhhhhHHHHHHHHHHHhcccCCCCHHHHHHHHHHcCCcHHHHHHHhcchHHHHHHHH
Confidence            000000 0122222211 1111111222222222211     11233345778999999999999999999899999988


Q ss_pred             HHHHhhcCCCCCceeeEEEECCe-ec-h-hhHhHHHHH
Q 026069          172 YAAETNSLVPPHQYVPWVVVDGQ-PL-Y-EDYENFISY  206 (244)
Q Consensus       172 ~~~~T~~l~P~~~~vP~I~ING~-~~-~-~a~~nL~~~  206 (244)
                      ..++..++.  +..|||++|||+ .. + +.+..|.+.
T Consensus       156 ~~~~a~~~g--v~GvP~~vv~g~~~~~G~~~~~~l~~~  191 (193)
T PF01323_consen  156 DTAEARQLG--VFGVPTFVVNGKYRFFGADRLDELEDA  191 (193)
T ss_dssp             HHHHHHHTT--CSSSSEEEETTTEEEESCSSHHHHHHH
T ss_pred             HHHHHHHcC--CcccCEEEECCEEEEECCCCHHHHHHH
Confidence            888877765  899999999998 33 2 344555544

The efficient and correct folding of bacterial disulphide bonded proteins in vivo is dependent upon a class of periplasmic oxidoreductase proteins called DsbA, after the Escherichia coli enzyme. The bacterial protein-folding factor DsbA is the most oxidizing of the thioredoxin family. DsbA catalyses disulphide-bond formation during the folding of secreted proteins. The extremely oxidizing nature of DsbA has been proposed to result from either domain motion or stabilising active-site interactions in the reduced form. DsbA's highly oxidizing nature is a result of hydrogen bond, electrostatic and helix-dipole interactions that favour the thiolate over the disulphide at the active site []. In the pathogenic bacterium Vibrio cholerae, the DsbA homologue (TcpG) is responsible for the folding, maturation and secretion of virulence factors. While the overall architecture of TcpG and DsbA is similar and the surface features are retained in TcpG, there are significant differences. For example, the kinked active site helix results from a three-residue loop in DsbA, but is caused by a proline in TcpG (making TcpG more similar to thioredoxin in this respect). Furthermore, the proposed peptide binding groove of TcpG is substantially shortened compared with that of DsbA due to a six-residue deletion. Also, the hydrophobic pocket of TcpG is more shallow and the acidic patch is much less extensive than that of E. coli DsbA [].; GO: 0015035 protein disulfide oxidoreductase activity; PDB: 3GL5_A 3DKS_D 3RPP_C 3RPN_B 1YZX_A 3L9V_C 2IMD_A 2IME_A 2IMF_A 2B3S_B ....

>PF13743 Thioredoxin_5: Thioredoxin; PDB: 3KZQ_C

Probab=97.52  E-value=0.00058  Score=57.92  Aligned_cols=143  Identities=15%  Similarity=0.117  Sum_probs=86.2

Q ss_pred             EEEEeCChhhHHHHHHHHHHHHhhccCCcceeEEEEeeecceecCCC-CceeecCChh--hhccchhhhh---hcccccc
Q 026069           46 LYYESLCPYSANFIINYLVKIFEDVDLLSIVDLHLSPWGNAKIRANN-STFDCQHGPS--ECLLNTVEAC---AIDSWPE  119 (244)
Q Consensus        46 vYyESlCPds~~Fi~~qL~P~~~~~~l~~~idl~lvP~G~a~~~~~~-~~f~CQHG~~--EC~gN~lqaC---ai~~~~~  119 (244)
                      +|+.-+|+.|-.+ ...|..+...  +...+++++||.|++...... ....+.+..-  +=......+|   -...+..
T Consensus         2 ~F~dPlc~~C~~~-E~~l~kl~~~--~~~~i~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~a~la~kAA~~qg   78 (176)
T PF13743_consen    2 LFVDPLCSWCWGF-EPELRKLKEE--YGNKIEFRFIPGGLMPDINDFMPRMPINGDFWRNEPRSSSYPACLAYKAAQLQG   78 (176)
T ss_dssp             EEE-TT-HHHHHH-HHHHHHHHHH--S-TTEEEEEEE--SS-S--SB--H----TTHHHS--BS--HHHHHHHHHHHTTT
T ss_pred             eeeCCCChHHHHh-HHHHHHHHHH--cCCcEEEEEEEccchHHHHHHHHhcCCCHHHhcCCCCCCchHHHHHHHHHHHhC
Confidence            4677899999998 4556666665  899999999999998743220 1111112111  1113334444   1122334


Q ss_pred             cccccchhhhhhhhcc-----cCchhhHHHHHHhcCCChhhhhhcccCchhhHHHHHHHHHhhcCCCCCceeeEEEECC
Q 026069          120 LNKHFPFIYCIESLVY-----EHKYSQWETCFDKLELDPKPIVDCYTSGYGTQLELKYAAETNSLVPPHQYVPWVVVDG  193 (244)
Q Consensus       120 ~~~~~~fI~C~~~~~~-----~~~~~~~~~Ca~~~gld~~~I~~C~~~~~G~~Ll~~~~~~T~~l~P~~~~vP~I~ING  193 (244)
                      .++...|+.-|+....     ....+....||++.|+|.+.+.+=.+|+..++.+.+--..+..+.  ++..|+++|-+
T Consensus        79 ~k~~~~fL~~lQ~a~~~~~~~~s~~~~l~~iA~~~gLD~~~F~~d~~S~~~~~~~~~D~~la~~m~--I~~~Ptlvi~~  155 (176)
T PF13743_consen   79 KKKARRFLRALQEALFLEGKNYSDEELLLEIAEELGLDVEMFKEDLHSDEAKQAFQEDQQLAREMG--ITGFPTLVIFN  155 (176)
T ss_dssp             -H--HHHHHHHHHHHHTS---TTSHHHHHHHHHHTT--HHHHHHHHTSHHHHHHHHHHHHHHHHTT---SSSSEEEEE-
T ss_pred             hhhHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHhCCCHHHHHHHHhChHHHHHHHHHHHHHHHcC--CCCCCEEEEEe
Confidence            5677788888876542     123356789999999999999888899999999999888888876  89999999865

>cd03022 DsbA_HCCA_Iso DsbA family, 2-hydroxychromene-2-carboxylate (HCCA) isomerase subfamily; HCCA isomerase is a glutathione (GSH) dependent enzyme involved in the naphthalene catabolic pathway

Probab=97.48  E-value=0.0015  Score=54.46  Aligned_cols=73  Identities=14%  Similarity=0.033  Sum_probs=55.0

Q ss_pred             cccchhhhhhhhcc-----cCchhhHHHHHHhcCCChhhhhhcccCchhhHHHHHHHHHhhcCCCCCceeeEEEECCeec
Q 026069          122 KHFPFIYCIESLVY-----EHKYSQWETCFDKLELDPKPIVDCYTSGYGTQLELKYAAETNSLVPPHQYVPWVVVDGQPL  196 (244)
Q Consensus       122 ~~~~fI~C~~~~~~-----~~~~~~~~~Ca~~~gld~~~I~~C~~~~~G~~Ll~~~~~~T~~l~P~~~~vP~I~ING~~~  196 (244)
                      ...+|+.=+.....     .+..+.+..++...|+|.+.+.++.++.+.+..+.+..+...++  ++..||+++|||+..
T Consensus       101 ~~~~~~~~lf~a~~~~~~~i~~~~~l~~~a~~~Gld~~~~~~~~~~~~~~~~l~~~~~~a~~~--gi~gvPtfvv~g~~~  178 (192)
T cd03022         101 AAEAFARAVFRALWGEGLDIADPAVLAAVAAAAGLDADELLAAADDPAVKAALRANTEEAIAR--GVFGVPTFVVDGEMF  178 (192)
T ss_pred             hHHHHHHHHHHHHhCCCCCCCCHHHHHHHHHHcCCCHHHHHHHcCCHHHHHHHHHHHHHHHHc--CCCcCCeEEECCeee
Confidence            44555555543221     12334567899999999999999999998888888888777665  599999999999875

It converts HCCA, a hemiketal formed spontaneously after ring cleavage of 1,2-dihydroxynapthalene by a dioxygenase, into cis-o-hydroxybenzylidenepyruvate (cHBPA). This is the fourth reaction in a six-step pathway that converts napthalene into salicylate. HCCA isomerase is unique to bacteria that degrade polycyclic aromatic compounds. It is closely related to the eukaryotic protein, GSH transferase kappa (GSTK).

>COG1651 DsbG Protein-disulfide isomerase [Posttranslational modification, protein turnover, chaperones]

Probab=97.29  E-value=0.0024  Score=55.92  Aligned_cols=157  Identities=17%  Similarity=0.159  Sum_probs=93.9

Q ss_pred             CCCCCCCCCceEEEEEEEeCChhhHHHHHHHHHHHHhhccCCcceeEEEEeeecceecCCCCceeecCChhhhccchhhh
Q 026069           32 RTSPSDVNSKVKLGLYYESLCPYSANFIINYLVKIFEDVDLLSIVDLHLSPWGNAKIRANNSTFDCQHGPSECLLNTVEA  111 (244)
Q Consensus        32 ~~~~~~~~~kV~V~vYyESlCPds~~Fi~~qL~P~~~~~~l~~~idl~lvP~G~a~~~~~~~~f~CQHG~~EC~gN~lqa  111 (244)
                      +...+....+|.|.+|.+-.||+|.+.+ ..|...+-.  .. .+++.+++|--.....    -.|++      +-..-.
T Consensus        76 ~~~~G~~~~~v~v~~f~d~~Cp~C~~~~-~~l~~~~i~--~~-~~~~~~~~~~f~~~~~----~~~~~------a~~~~~  141 (244)
T COG1651          76 DVVLGNPYAPVTVVEFFDYTCPYCKEAF-PELKKKYID--DG-KVRLVLREFPFLDPAC----PYCRR------AAQAAR  141 (244)
T ss_pred             cccccCCCCCceEEEEecCcCccHHHHH-HHHHHHhhh--cC-CCceEEEEeecCCCCc----HHHHH------HHHHHH
Confidence            3336666779999999999999996664 344443332  22 2244444443222111    11444      667777


Q ss_pred             hhcccccccccccchhhhhhhhcccCchhhHHHHHHhc-CCC--h--hhhhhcccCchhhHHHHHHHHHhhcCCCCCcee
Q 026069          112 CAIDSWPELNKHFPFIYCIESLVYEHKYSQWETCFDKL-ELD--P--KPIVDCYTSGYGTQLELKYAAETNSLVPPHQYV  186 (244)
Q Consensus       112 Cai~~~~~~~~~~~fI~C~~~~~~~~~~~~~~~Ca~~~-gld--~--~~I~~C~~~~~G~~Ll~~~~~~T~~l~P~~~~v  186 (244)
                      |+.+.-.  .++|.|..=+.+.... ....+..|+... +..  .  ..+..|.+......+..++......+.  ++.+
T Consensus       142 ~~~~~~~--~~y~~~~~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~a~~~g--v~gT  216 (244)
T COG1651         142 CAADQGI--VRYWAFHDALFGSQAE-AWAASILCAKDLAKADLAALDEGKKAKLNQKACDALIAKNYKLAQQLG--VNGT  216 (244)
T ss_pred             Hhccccc--hhHHHHHHHHhhcccc-chhhhhhhhhhhhhhhHHHHHhhhhhccChHHHHHHHHHHHHHHHhcC--CCcC
Confidence            8855432  4689998888766532 223345565543 211  1  456777764556677777777766654  9999


Q ss_pred             eEEEECCeech-h-hHhHHHHHH
Q 026069          187 PWVVVDGQPLY-E-DYENFISYV  207 (244)
Q Consensus       187 P~I~ING~~~~-~-a~~nL~~~I  207 (244)
                      |+++|||+.+. . ..+.|.+.|
T Consensus       217 Pt~~v~~~~~~g~~~~~~l~~~i  239 (244)
T COG1651         217 PTFIVNGKLVPGLPDLDELKAII  239 (244)
T ss_pred             CeEEECCeeecCCCCHHHHHHHH
Confidence            99999997543 2 345666555

>COG2761 FrnE Predicted dithiol-disulfide isomerase involved in polyketide biosynthesis [Secondary metabolites biosynthesis, transport, and catabolism]

Probab=96.72  E-value=0.0095  Score=52.84  Aligned_cols=170  Identities=14%  Similarity=0.122  Sum_probs=107.6

Q ss_pred             CCCceEEEEEEEeCChhhHHHHHHHHHHHHhhccCCccee--EEEEeeecceec-CC----------CCce----eecCC
Q 026069           38 VNSKVKLGLYYESLCPYSANFIINYLVKIFEDVDLLSIVD--LHLSPWGNAKIR-AN----------NSTF----DCQHG  100 (244)
Q Consensus        38 ~~~kV~V~vYyESlCPds~~Fi~~qL~P~~~~~~l~~~id--l~lvP~G~a~~~-~~----------~~~f----~CQHG  100 (244)
                      ...+|+|++|..-.||.|--. ...|-.+...  +.++++  +...||=-...- ..          .++.    .=.|.
T Consensus         2 ~~~~i~I~v~sD~vCPwC~ig-~~rL~ka~~~--~~~~~~v~i~w~pf~l~p~~~~~g~~~~~~l~~k~g~~~~~~~~~~   78 (225)
T COG2761           2 NPMKIEIDVFSDVVCPWCYIG-KRRLEKALAE--YPQEVRVEIRWRPFELDPDLPPEGLDRKEYLAQKYGISEEQKAAHA   78 (225)
T ss_pred             CCceEEEEEEeCCcCchhhcC-HHHHHHHHHh--cCcceeEEEEecccccCCCCCcccccHHHHHHHHhCccHHHHHHHH
Confidence            457899999999999999655 5556666665  555544  555566322110 00          0000    00000


Q ss_pred             -----hhh-----------hccchhhhhhccccc-ccc-cccchhhhhhhhcc-----cCchhhHHHHHHhcCCChhhhh
Q 026069          101 -----PSE-----------CLLNTVEACAIDSWP-ELN-KHFPFIYCIESLVY-----EHKYSQWETCFDKLELDPKPIV  157 (244)
Q Consensus       101 -----~~E-----------C~gN~lqaCai~~~~-~~~-~~~~fI~C~~~~~~-----~~~~~~~~~Ca~~~gld~~~I~  157 (244)
                           -.|           =..|.+.+|-+-++- ... .+..|+.=+.+.-+     .++.+.+-.||.++|||.+.+.
T Consensus        79 ~~~~~~~~~Gi~~~f~~~~~~~nt~~Ah~l~~~A~~~G~~~~~~~~~lf~AyF~eg~nI~D~dVL~diA~~~GLD~~~~~  158 (225)
T COG2761          79 RLEELAEEEGIDFNFDAIVPAPNTLDAHRLIKAAELQGKAQDRFLEALFEAYFEEGRNIGDEDVLADIAEEVGLDREEFK  158 (225)
T ss_pred             HHHHhhHhcCcccchhhccCCCchHHHHHHHHHHHHhCchHHHHHHHHHHHHhccCCCCCcHHHHHHHHHHhCCCHHHHH
Confidence                 111           124556666554442 122 47788877765543     3556677899999999999999


Q ss_pred             hcccCchhhHHHHHHHHHhhcCCCCCceeeEEEECCeec--h-hhHhHHHHHHHHhhc
Q 026069          158 DCYTSGYGTQLELKYAAETNSLVPPHQYVPWVVVDGQPL--Y-EDYENFISYVCKAYK  212 (244)
Q Consensus       158 ~C~~~~~G~~Ll~~~~~~T~~l~P~~~~vP~I~ING~~~--~-~a~~nL~~~IC~~y~  212 (244)
                      +=..++...+-+..-.+.+..+.  ++.||+++|+|+.-  + +..+-|..+|=+...
T Consensus       159 ~~L~s~~~~~avr~d~~~A~e~g--I~gVP~fv~d~~~~V~Gaq~~~v~~~al~~~~~  214 (225)
T COG2761         159 ADLASDAAKDAVRQDEAAAQEMG--IRGVPTFVFDGKYAVSGAQPYDVLEDALRQLLA  214 (225)
T ss_pred             HHHhChHHHHHHHHHHHHHHHCC--CccCceEEEcCcEeecCCCCHHHHHHHHHHHHh
Confidence            99998888887777777766654  99999999977653  2 345566666666553

>cd02972 DsbA_family DsbA family; consists of DsbA and DsbA-like proteins, including DsbC, DsbG, glutathione (GSH) S-transferase kappa (GSTK), 2-hydroxychromene-2-carboxylate (HCCA) isomerase, an oxidoreductase (FrnE) presumed to be involved in frenolicin biosynthesis, a 27-kDa outer membrane protein, and similar proteins

Probab=96.22  E-value=0.013  Score=42.25  Aligned_cols=41  Identities=22%  Similarity=0.314  Sum_probs=33.3

Q ss_pred             EEEEEEeCChhhHHHHHHHHHHHHhhccCCcceeEEEEeeecce
Q 026069           44 LGLYYESLCPYSANFIINYLVKIFEDVDLLSIVDLHLSPWGNAK   87 (244)
Q Consensus        44 V~vYyESlCPds~~Fi~~qL~P~~~~~~l~~~idl~lvP~G~a~   87 (244)
                      |.+|+.-.||.|..+ ..+|.+....  ..+.++|+++|++-..
T Consensus         1 i~~f~d~~Cp~C~~~-~~~l~~~~~~--~~~~~~~~~~~~~~~~   41 (98)
T cd02972           1 IVEFFDPLCPYCYLF-EPELEKLLYA--DDGGVRVVYRPFPLLG   41 (98)
T ss_pred             CeEEECCCCHhHHhh-hHHHHHHHhh--cCCcEEEEEeccccCC
Confidence            578999999999999 5778877643  6788999999987554

Members of this family contain a redox active CXXC motif (except GSTK and HCCA isomerase) imbedded in a TRX fold, and an alpha helical insert of about 75 residues (shorter in DsbC and DsbG) relative to TRX. DsbA is involved in the oxidative protein folding pathway in prokaryotes, catalyzing disulfide bond formation of proteins secreted into the bacterial periplasm. DsbC and DsbG function as protein disulfide isomerases and chaperones to correct non-native disulfide bonds formed by DsbA and prevent aggregation of incorrectly folded proteins.

>PRK10877 protein disulfide isomerase II DsbC; Provisional

Probab=95.64  E-value=0.11  Score=45.97  Aligned_cols=46  Identities=7%  Similarity=0.114  Sum_probs=32.5

Q ss_pred             CCCCCCceEEEEEEEeCChhhHHHHHHHHHHHHhhccCCcceeEEEEeeecc
Q 026069           35 PSDVNSKVKLGLYYESLCPYSANFIINYLVKIFEDVDLLSIVDLHLSPWGNA   86 (244)
Q Consensus        35 ~~~~~~kV~V~vYyESlCPds~~Fi~~qL~P~~~~~~l~~~idl~lvP~G~a   86 (244)
                      .+..+.++.|.+|..-.||+|+++ ..+|.+..+     .-+.+++++|...
T Consensus       102 ~g~~~~k~~I~vFtDp~CpyCkkl-~~~l~~~~~-----~~v~v~~~~~P~~  147 (232)
T PRK10877        102 YKAPQEKHVITVFTDITCGYCHKL-HEQMKDYNA-----LGITVRYLAFPRQ  147 (232)
T ss_pred             ecCCCCCEEEEEEECCCChHHHHH-HHHHHHHhc-----CCeEEEEEeccCC
Confidence            344568889999999999999999 455544332     2367777766643

>PRK11657 dsbG disulfide isomerase/thiol-disulfide oxidase; Provisional

Probab=93.21  E-value=0.18  Score=45.08  Aligned_cols=47  Identities=15%  Similarity=0.231  Sum_probs=37.6

Q ss_pred             CCCCCCceEEEEEEEeCChhhHHHHHHHHHHHHhhccCCcceeEEEEeeecc
Q 026069           35 PSDVNSKVKLGLYYESLCPYSANFIINYLVKIFEDVDLLSIVDLHLSPWGNA   86 (244)
Q Consensus        35 ~~~~~~kV~V~vYyESlCPds~~Fi~~qL~P~~~~~~l~~~idl~lvP~G~a   86 (244)
                      .+..+.+..|.+|..-.||+|++| ...+.|..+.    ..|.++++|++-.
T Consensus       112 ~g~~~ak~~I~vFtDp~CpyC~kl-~~~l~~~~~~----g~V~v~~ip~~~l  158 (251)
T PRK11657        112 DGKADAPRIVYVFADPNCPYCKQF-WQQARPWVDS----GKVQLRHILVGII  158 (251)
T ss_pred             ccCCCCCeEEEEEECCCChhHHHH-HHHHHHHhhc----CceEEEEEecccc
Confidence            345678899999999999999999 5677776664    4588999998753

>PF14595 Thioredoxin_9: Thioredoxin; PDB: 1Z6N_A

Probab=88.21  E-value=0.66  Score=37.47  Aligned_cols=43  Identities=7%  Similarity=0.173  Sum_probs=25.7

Q ss_pred             CCCCceEEEEEEEeCChhhHHHHHHHHHHHHhh-ccCCcceeEEEEeee
Q 026069           37 DVNSKVKLGLYYESLCPYSANFIINYLVKIFED-VDLLSIVDLHLSPWG   84 (244)
Q Consensus        37 ~~~~kV~V~vYyESlCPds~~Fi~~qL~P~~~~-~~l~~~idl~lvP~G   84 (244)
                      .-..++++.++.|.-||||++++     |++.+ -+....|+++++.-.
T Consensus        38 ~~~~~~~ilvi~e~WCgD~~~~v-----P~l~kiae~~p~i~~~~i~rd   81 (129)
T PF14595_consen   38 SIQKPYNILVITETWCGDCARNV-----PVLAKIAEANPNIEVRIILRD   81 (129)
T ss_dssp             T--S-EEEEEE--TT-HHHHHHH-----HHHHHHHHH-TTEEEEEE-HH
T ss_pred             hcCCCcEEEEEECCCchhHHHHH-----HHHHHHHHhCCCCeEEEEEec
Confidence            45678999999999999999996     55444 113446788887664

>cd03020 DsbA_DsbC_DsbG DsbA family, DsbC and DsbG subfamily; V-shaped homodimeric proteins containing a redox active CXXC motif imbedded in a TRX fold

Probab=87.10  E-value=1.1  Score=37.94  Aligned_cols=45  Identities=18%  Similarity=0.175  Sum_probs=34.6

Q ss_pred             CCCCCCceEEEEEEEeCChhhHHHHHHHHHHHHhhccCCcceeEEEEeeecc
Q 026069           35 PSDVNSKVKLGLYYESLCPYSANFIINYLVKIFEDVDLLSIVDLHLSPWGNA   86 (244)
Q Consensus        35 ~~~~~~kV~V~vYyESlCPds~~Fi~~qL~P~~~~~~l~~~idl~lvP~G~a   86 (244)
                      .+..+.++.|.+|..-.||+|+++ ...|.+      ..+-+.|+++||+-.
T Consensus        72 ~g~~~~~~~i~~f~D~~Cp~C~~~-~~~l~~------~~~~v~v~~~~~p~~  116 (197)
T cd03020          72 YGKGNGKRVVYVFTDPDCPYCRKL-EKELKP------NADGVTVRIFPVPIL  116 (197)
T ss_pred             EcCCCCCEEEEEEECCCCccHHHH-HHHHhh------ccCceEEEEEEcCcC
Confidence            445568999999999999999999 455655      234578888888644

They function as protein disulfide isomerases and chaperones in the bacterial periplasm to correct non-native disulfide bonds formed by DsbA and prevent aggregation of incorrectly folded proteins. DsbC and DsbG are kept in their reduced state by the cytoplasmic membrane protein DsbD, which utilizes the TRX/TRX reductase system in the cytosol as a source of reducing equivalents. DsbG differ from DsbC in that it has a more limited substrate specificity, and it may preferentially act later in the folding process to catalyze disulfide rearrangements in folded or partially folded proteins. Also included in the alignment is the predicted protein TrbB, whose gene was sequenced from the enterohemorrhagic E. coli type IV pilus gene cluster, which is required for efficient plasmid transfer.

>cd03021 DsbA_GSTK DsbA family, Glutathione (GSH) S-transferase Kappa (GSTK) subfamily; GSTK is a member of the GST family of enzymes which catalyzes the transfer of the thiol of GSH to electrophilic substrates

Probab=84.85  E-value=1.5  Score=37.64  Aligned_cols=49  Identities=16%  Similarity=0.127  Sum_probs=36.4

Q ss_pred             HHHHHhcCCChhhhh---hcccCchhhHHHHHHHHHhhcCCCCCceeeEEEECC
Q 026069          143 ETCFDKLELDPKPIV---DCYTSGYGTQLELKYAAETNSLVPPHQYVPWVVVDG  193 (244)
Q Consensus       143 ~~Ca~~~gld~~~I~---~C~~~~~G~~Ll~~~~~~T~~l~P~~~~vP~I~ING  193 (244)
                      ..++...|+|++...   .-+.++++++.+.+..++..++  ++..||+++||+
T Consensus       136 ~~~a~~~Gld~~~~~~~l~~~~~~~~~~~l~~~~~~A~~~--Gv~GVP~fvv~~  187 (209)
T cd03021         136 SVAADKLGGSAEQAEKLLKAASTPEVKNRLKENTDEALKY--GAFGLPWIVVTN  187 (209)
T ss_pred             HHHHHHcCCCcccHHHHHHHccCHHHHHHHHHHHHHHHHc--CCCCCCEEEEEc
Confidence            589999999865444   4446677777777777665554  699999999964

It is specifically located in the mitochondria and peroxisomes, unlike other members of the canonical GST family, which are mainly cytosolic. The biological substrates of GSTK are not yet known. It is presumed to have a protective role during respiration when large amounts of reactive oxygen species are generated. GSTK has the same general fold as DsbA, consisting of a thioredoxin domain interrupted by an alpha-helical domain and its biological unit is a homodimer. GSTK is closely related to the bacterial enzyme, 2-hydroxychromene-2-carboxylate (HCCA) isomerase. It shows little sequence similarity to the other members of the GST family.

>cd02973 TRX_GRX_like Thioredoxin (TRX)-Glutaredoxin (GRX)-like family; composed of archaeal and bacterial proteins that show similarity to both TRX and GRX, including the C-terminal TRX-fold subdomain of Pyrococcus furiosus protein disulfide oxidoreductase (PfPDO)

Probab=82.66  E-value=2.6  Score=28.94  Aligned_cols=17  Identities=24%  Similarity=0.755  Sum_probs=15.7

Q ss_pred             eEEEEEEEeCChhhHHH
Q 026069           42 VKLGLYYESLCPYSANF   58 (244)
Q Consensus        42 V~V~vYyESlCPds~~F   58 (244)
                      |+|.+|+.+-||.|.+.
T Consensus         1 ~~v~~f~~~~C~~C~~~   17 (67)
T cd02973           1 VNIEVFVSPTCPYCPDA   17 (67)
T ss_pred             CEEEEEECCCCCCcHHH
Confidence            68999999999999877

All members contain a redox-active CXXC motif and may function as PDOs. The archaeal proteins Mj0307 and Mt807 show structures more similar to GRX, but activities more similar to TRX. Some members of the family are similar to PfPDO in that they contain a second CXXC motif located in a second TRX-fold subdomain at the N-terminus; the superimposable N- and C-terminal TRX subdomains form a compact structure. PfPDO is postulated to be the archaeal counterpart of bacterial DsbA and eukaryotic protein disulfide isomerase (PDI). The C-terminal CXXC motif of PfPDO is required for its oxidase, reductase and isomerase activities. Also included in the family is the C-terminal TRX-fold subdomain of the N-terminal domain (NTD) of bacteri

>TIGR00411 redox_disulf_1 small redox-active disulfide protein 1

Probab=82.36  E-value=2.8  Score=29.59  Aligned_cols=26  Identities=23%  Similarity=0.513  Sum_probs=20.2

Q ss_pred             eEEEEEEEeCChhhHHHHHHHHHHHHh
Q 026069           42 VKLGLYYESLCPYSANFIINYLVKIFE   68 (244)
Q Consensus        42 V~V~vYyESlCPds~~Fi~~qL~P~~~   68 (244)
                      |+|++|+-+-||.|+.. ...|..+..
T Consensus         1 ~~v~~f~~~~C~~C~~~-~~~l~~l~~   26 (82)
T TIGR00411         1 VKIELFTSPTCPYCPAA-KRVVEEVAK   26 (82)
T ss_pred             CEEEEEECCCCcchHHH-HHHHHHHHH
Confidence            78999999999999987 344554444

This protein is homologous to a family of proteins that includes thioredoxins, glutaredoxins, protein-disulfide isomerases, and others, some of which have several such domains. The sequence of this protein at the redox-active disufide site, CPYC, matches glutaredoxins rather than thioredoxins, although its overall sequence seems closer to thioredoxins. It is suggested to be a ribonucleotide-reducing system component distinct from thioredoxin or glutaredoxin.

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

No hit with e-value below 0.005

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	244
3gha_A	202	Disulfide bond formation protein D; BDBD, DSBA-lik	99.1
3gyk_A	175	27KDA outer membrane protein; APC61738.2, siliciba	99.04
3gmf_A	205	Protein-disulfide isomerase; oxidoreductase, PSI-2	99.03
3bci_A	186	Disulfide bond protein A; thiol-disulfide oxidored	99.0
2rem_A	193	Disulfide oxidoreductase; disulfide oxidoreductase	98.94
3f4s_A	226	Alpha-DSBA1, putative uncharacterized protein; thi	98.94
4dvc_A	184	Thiol:disulfide interchange protein DSBA; pilus as	98.87
3h93_A	192	Thiol:disulfide interchange protein DSBA; disulfid	98.86
3hd5_A	195	Thiol:disulfide interchange protein DSBA; protein	98.86
2znm_A	195	Thiol:disulfide interchange protein DSBA; thioredo	98.79
3hz8_A	193	Thiol:disulfide interchange protein DSBA; thiol-ox	98.69
3gn3_A	182	Putative protein-disulfide isomerase; MCSG, PSI, s	98.61
1z6m_A	175	Conserved hypothetical protein; structural genomic	98.51
3l9v_A	189	Putative thiol-disulfide isomerase or thioredoxin;	98.43
3l9s_A	191	Thiol:disulfide interchange protein; thioredoxin-f	98.39
2imf_A	203	HCCA isomerase, 2-hydroxychromene-2-carboxylate is	98.29
3c7m_A	195	Thiol:disulfide interchange protein DSBA-like; red	98.27
2in3_A	216	Hypothetical protein; DSBA family, FRNE-like subfa	98.25
3kzq_A	208	Putative uncharacterized protein VP2116; protein w	98.18
3fz5_A	202	Possible 2-hydroxychromene-2-carboxylate isomeras;	97.93
3feu_A	185	Putative lipoprotein; alpha-beta structure, struct	97.9
3gl5_A	239	Putative DSBA oxidoreductase SCO1869; probable DSB	97.81
1r4w_A	226	Glutathione S-transferase, mitochondrial; glutathi	97.77
3rpp_A	234	Glutathione S-transferase kappa 1; glutathione tra	97.02
3gv1_A	147	Disulfide interchange protein; neisseria gonorrhoe	96.37
1un2_A	197	DSBA, thiol-disulfide interchange protein; disulfi	95.87
1t3b_A	211	Thiol:disulfide interchange protein DSBC; oxidored	95.8
1v58_A	241	Thiol:disulfide interchange protein DSBG; reduced	93.69
3tdg_A	273	DSBG, putative uncharacterized protein; thioredoxi	88.91
1eej_A	216	Thiol:disulfide interchange protein; oxidoreductas	81.76
1fo5_A	85	Thioredoxin; disulfide oxidoreductase, structural	80.4

>3gha_A Disulfide bond formation protein D; BDBD, DSBA-like, TRX-like, oxidoreductase, competence, redox-active center; 1.40A {Bacillus subtilis} PDB: 3eu4_A 3gh9_A 3eu3_A

Probab=99.10  E-value=7.2e-10  Score=93.98  Aligned_cols=162  Identities=12%  Similarity=0.104  Sum_probs=116.0

Q ss_pred             CCCCCCCCceEEEEEEEeCChhhHHHHHHHHHHHHhhccC--CcceeEEEEeeecceecCCCCceeecCChhhhccchhh
Q 026069           33 TSPSDVNSKVKLGLYYESLCPYSANFIINYLVKIFEDVDL--LSIVDLHLSPWGNAKIRANNSTFDCQHGPSECLLNTVE  110 (244)
Q Consensus        33 ~~~~~~~~kV~V~vYyESlCPds~~Fi~~qL~P~~~~~~l--~~~idl~lvP~G~a~~~~~~~~f~CQHG~~EC~gN~lq  110 (244)
                      ...+..+.+|+|.+|..-.||+|++| ...+.|.+.+ .+  ...|.|.++||.-             ||+.-=.+-...
T Consensus        22 ~~~G~~~a~vtvvef~D~~CP~C~~~-~~~~~~~l~~-~~~~~g~v~~~~~~~p~-------------~~~~s~~Aa~aa   86 (202)
T 3gha_A           22 PVLGKDDAPVTVVEFGDYKCPSCKVF-NSDIFPKIQK-DFIDKGDVKFSFVNVMF-------------HGKGSRLAALAS   86 (202)
T ss_dssp             CEESCTTCSEEEEEEECTTCHHHHHH-HHHTHHHHHH-HTTTTTSEEEEEEECCC-------------SHHHHHHHHHHH
T ss_pred             ceecCCCCCEEEEEEECCCChhHHHH-HHHhhHHHHH-HhccCCeEEEEEEecCc-------------cchhHHHHHHHH
Confidence            34778899999999999999999999 4667777764 24  3467787777742             111111122333


Q ss_pred             hhhcccccccccccchhhhhhhhccc-----CchhhHHHHHHh-cCCChhhhhhcccCchhhHHHHHHHHHhhcCCCCCc
Q 026069          111 ACAIDSWPELNKHFPFIYCIESLVYE-----HKYSQWETCFDK-LELDPKPIVDCYTSGYGTQLELKYAAETNSLVPPHQ  184 (244)
Q Consensus       111 aCai~~~~~~~~~~~fI~C~~~~~~~-----~~~~~~~~Ca~~-~gld~~~I~~C~~~~~G~~Ll~~~~~~T~~l~P~~~  184 (244)
                      .|+...  ++.++|+|..-++.....     ...+.+...+.. .|+|.+.+.+|.++......+.+..+...++.  ++
T Consensus        87 ~a~~~~--~~~~f~~~~~aLf~~~~~~~~~~~~~~~L~~~a~~~~Gld~~~~~~~l~s~~~~~~v~~~~~~a~~~g--V~  162 (202)
T 3gha_A           87 EEVWKE--DPDSFWDFHEKLFEKQPDTEQEWVTPGLLGDLAKSTTKIKPETLKENLDKETFASQVEKDSDLNQKMN--IQ  162 (202)
T ss_dssp             HHHHHH--CGGGHHHHHHHHHHHCCSSSSCCCCHHHHHHHHHHHSSSCHHHHHHHHHHTTTHHHHHHHHHHHHHTT--CC
T ss_pred             HHHHhh--CHHHHHHHHHHHHHhCccccccccCHHHHHHHHHHhcCCCHHHHHHHHhChHHHHHHHHHHHHHHHcC--CC
Confidence            344332  457889999888766432     123456788998 99999999999998888877777777776654  99


Q ss_pred             eeeEEEECCeech--hhHhHHHHHHHHhhcC
Q 026069          185 YVPWVVVDGQPLY--EDYENFISYVCKAYKG  213 (244)
Q Consensus       185 ~vP~I~ING~~~~--~a~~nL~~~IC~~y~g  213 (244)
                      .+|+++|||+.+.  ...+.|.++|=....+
T Consensus       163 gtPtfvvnG~~~~G~~~~e~l~~~i~~~~~~  193 (202)
T 3gha_A          163 ATPTIYVNDKVIKNFADYDEIKETIEKELKG  193 (202)
T ss_dssp             SSCEEEETTEECSCTTCHHHHHHHHHHHHHH
T ss_pred             cCCEEEECCEEecCCCCHHHHHHHHHHHHHh
Confidence            9999999999863  3567888888766654

>3gyk_A 27KDA outer membrane protein; APC61738.2, silicibacter pomeroyi DSS-3, thioredoxin-like, oxidoreductase, structural genomics, PSI-2; HET: MSE; 1.76A {Silicibacter pomeroyi}

Probab=99.04  E-value=3.3e-09  Score=86.19  Aligned_cols=153  Identities=12%  Similarity=0.092  Sum_probs=107.5

Q ss_pred             CCCCCCCceEEEEEEEeCChhhHHHHHHHHHHHHhhccCCcceeEEEEeeecceecCCCCceeecCChhhhccchhhhhh
Q 026069           34 SPSDVNSKVKLGLYYESLCPYSANFIINYLVKIFEDVDLLSIVDLHLSPWGNAKIRANNSTFDCQHGPSECLLNTVEACA  113 (244)
Q Consensus        34 ~~~~~~~kV~V~vYyESlCPds~~Fi~~qL~P~~~~~~l~~~idl~lvP~G~a~~~~~~~~f~CQHG~~EC~gN~lqaCa  113 (244)
                      ..+..+.||.|.+|+...||+|++|. ..|.+.+++  ..+ +.|.++++.-..             +.-=...+.-.|+
T Consensus        16 ~~G~~~a~v~i~~f~d~~Cp~C~~~~-~~l~~l~~~--~~~-v~~~~~~~p~~~-------------~~s~~aa~~~~~a   78 (175)
T 3gyk_A           16 VLGNPEGDVTVVEFFDYNCPYCRRAM-AEVQGLVDA--DPN-VRLVYREWPILG-------------EGSDFAARAALAA   78 (175)
T ss_dssp             EEECTTCSEEEEEEECTTCHHHHHHH-HHHHHHHHH--CTT-EEEEEEECCCSC-------------HHHHHHHHHHHHG
T ss_pred             CcCCCCCCEEEEEEECCCCccHHHHH-HHHHHHHHh--CCC-EEEEEEeCCCCC-------------CChHHHHHHHHHH
Confidence            36778899999999999999999994 677777775  555 677666664221             1111123333444


Q ss_pred             cccccccccccchhhhhhhhcccCchhhHHHHHHhcCCChhhhhhcccCchhhHHHHHHHHHhhcCCCCCceeeEEEECC
Q 026069          114 IDSWPELNKHFPFIYCIESLVYEHKYSQWETCFDKLELDPKPIVDCYTSGYGTQLELKYAAETNSLVPPHQYVPWVVVDG  193 (244)
Q Consensus       114 i~~~~~~~~~~~fI~C~~~~~~~~~~~~~~~Ca~~~gld~~~I~~C~~~~~G~~Ll~~~~~~T~~l~P~~~~vP~I~ING  193 (244)
                      ..    ...+++|..=++.....-..+.+...++..|+|.+.+.+|.++......+.+..+...++.  +..+||++|||
T Consensus        79 ~~----~~~~~~~~~~lf~~~~~~~~~~l~~~a~~~Gld~~~~~~~~~~~~~~~~v~~~~~~a~~~g--v~gtPt~~i~g  152 (175)
T 3gyk_A           79 RQ----QGKYEAFHWALMGMSGKANETGVLRIAREVGLDTEQLQRDMEAPEVTAHIAQSMALAQKLG--FNGTPSFVVED  152 (175)
T ss_dssp             GG----GTCHHHHHHHHHTCSSCCSHHHHHHHHHHTTCCHHHHHHHTTCHHHHHHHHHHHHHHHHHT--CCSSSEEEETT
T ss_pred             HH----HhHHHHHHHHHHhcCCCCCHHHHHHHHHHcCCCHHHHHHHHhChHHHHHHHHHHHHHHHcC--CccCCEEEECC
Confidence            32    2456777666655432223345678899999999999999999998888888888777665  89999999999


Q ss_pred             eech--hhHhHHHHHHHH
Q 026069          194 QPLY--EDYENFISYVCK  209 (244)
Q Consensus       194 ~~~~--~a~~nL~~~IC~  209 (244)
                      +...  ...+.|.+.|=.
T Consensus       153 ~~~~G~~~~~~l~~~i~~  170 (175)
T 3gyk_A          153 ALVPGFVEQSQLQDAVDR  170 (175)
T ss_dssp             EEECSCCCHHHHHHHHHH
T ss_pred             EEeeCCCCHHHHHHHHHH
Confidence            8653  245566666543

>3gmf_A Protein-disulfide isomerase; oxidoreductase, PSI-2, NYSGXRC, structu genomics, protein structure initiative; 1.76A {Novosphingobium aromaticivorans}

Probab=99.03  E-value=7.7e-10  Score=94.45  Aligned_cols=157  Identities=10%  Similarity=0.114  Sum_probs=110.9

Q ss_pred             CCCCCCCCCceEEEEEEEeCChhhHHHHHHHHHHHHhhccC--CcceeEEEEeeecceecCCCCceeecCChhhhccchh
Q 026069           32 RTSPSDVNSKVKLGLYYESLCPYSANFIINYLVKIFEDVDL--LSIVDLHLSPWGNAKIRANNSTFDCQHGPSECLLNTV  109 (244)
Q Consensus        32 ~~~~~~~~~kV~V~vYyESlCPds~~Fi~~qL~P~~~~~~l--~~~idl~lvP~G~a~~~~~~~~f~CQHG~~EC~gN~l  109 (244)
                      +...+..+.+|+|.+|..-.||+|++| ...+.|.+++ ++  ...|.|.+.+|--   ..          .. -.+...
T Consensus         7 ~~~~G~~~a~vtivef~D~~Cp~C~~~-~~~~~~~l~~-~~i~~g~v~~v~r~~pl---~~----------~s-~~aa~a   70 (205)
T 3gmf_A            7 HHLLGNPAAKLRLVEFVSYTCPHCSHF-EIESEGQLKI-GMVQPGKGAIEVRNFVR---DP----------ID-MTVALI   70 (205)
T ss_dssp             EEEESCTTCSEEEEEEECTTCHHHHHH-HHHHHHHHHH-HTTTTTSEEEEEEECCC---SH----------HH-HHHHHH
T ss_pred             CceecCCCCCeEEEEEECCCCHHHHHH-HHHHHHHHHH-HhccCCeEEEEEEeCCC---Cc----------ch-HHHHHH
Confidence            334678899999999999999999999 5678888873 14  4667777777621   11          01 113344


Q ss_pred             hhhhcccccccccccchhhhhhhhccc-------Cch---------------------hhHHHHHHhcCCChhhhhhccc
Q 026069          110 EACAIDSWPELNKHFPFIYCIESLVYE-------HKY---------------------SQWETCFDKLELDPKPIVDCYT  161 (244)
Q Consensus       110 qaCai~~~~~~~~~~~fI~C~~~~~~~-------~~~---------------------~~~~~Ca~~~gld~~~I~~C~~  161 (244)
                      ..|+     .+.++|+|..=++..+..       -..                     ..+...+...|+|.+.+.+|.+
T Consensus        71 a~~~-----~~~~f~~~~~~Lf~~q~~~~~~~~~~~~~~~~~w~~~~~~~~l~~ia~~~~L~~~a~~~Gld~~~~~~~l~  145 (205)
T 3gmf_A           71 TNCV-----PPSRFFTLHTAFMRSQAQWIGPLANSTEAQRQRWFNGTFATRTRAIASDFRFYDFMAARGMDRSTLDRCLS  145 (205)
T ss_dssp             HHHS-----CHHHHHHHHHHHHHTHHHHCHHHHHCCHHHHHTTSSSCHHHHHHHHHHHTTHHHHHHTTTCCHHHHHHHHT
T ss_pred             HHhc-----CHhHHHHHHHHHHHcCHHHHhcccccchhhhhccccchhHHHHHhccCHHHHHHHHHHcCCCHHHHHHHHc
Confidence            5565     467899999888765420       000                     1245677889999999999999


Q ss_pred             CchhhHHHHHHHHHh-hcCCCCCceeeEEEECCeech--hhHhHHHHHHHHhh
Q 026069          162 SGYGTQLELKYAAET-NSLVPPHQYVPWVVVDGQPLY--EDYENFISYVCKAY  211 (244)
Q Consensus       162 ~~~G~~Ll~~~~~~T-~~l~P~~~~vP~I~ING~~~~--~a~~nL~~~IC~~y  211 (244)
                      +......+.+..+.. .++.  ++.+|+++|||+.+.  ...+.|.++|=...
T Consensus       146 s~~~~~~v~~~~~~a~~~~G--V~GtPtfvvng~~~~G~~~~e~l~~~i~~~~  196 (205)
T 3gmf_A          146 NEALAKKLAAETDEAINQYN--VSGTPSFMIDGILLAGTHDWASLRPQILARL  196 (205)
T ss_dssp             CHHHHHHHHHHHHHHHHHHC--CCSSSEEEETTEECTTCCSHHHHHHHHHHHH
T ss_pred             CHHHHHHHHHHHHHHHHHcC--CccCCEEEECCEEEeCCCCHHHHHHHHHHHh
Confidence            988777777766665 5554  899999999999874  35677777775544

>3bci_A Disulfide bond protein A; thiol-disulfide oxidoreductase, redox protein, protein folding, redox active centre; 1.81A {Staphylococcus aureus} PDB: 3bd2_A 3bck_A

Probab=99.00  E-value=4.4e-09  Score=86.69  Aligned_cols=158  Identities=13%  Similarity=0.177  Sum_probs=103.9

Q ss_pred             CCCCCCceEEEEEEEeCChhhHHHHHHHHHHHHhhccCC--cceeEEEEeeecceecCCCCceeecCChhhhccchhhhh
Q 026069           35 PSDVNSKVKLGLYYESLCPYSANFIINYLVKIFEDVDLL--SIVDLHLSPWGNAKIRANNSTFDCQHGPSECLLNTVEAC  112 (244)
Q Consensus        35 ~~~~~~kV~V~vYyESlCPds~~Fi~~qL~P~~~~~~l~--~~idl~lvP~G~a~~~~~~~~f~CQHG~~EC~gN~lqaC  112 (244)
                      .+..+.+|+|.+|..-.||+|.+| ...|.|.+.+ ++.  ..+.|.+.||.-.             |+.-=.....-.|
T Consensus         6 ~G~~~a~~~i~~f~D~~Cp~C~~~-~~~l~~~l~~-~~~~~~~v~~~~~~~p~~-------------~~~s~~aa~a~~~   70 (186)
T 3bci_A            6 TSSKNGKPLVVVYGDYKCPYCKEL-DEKVMPKLRK-NYIDNHKVEYQFVNLAFL-------------GKDSIVGSRASHA   70 (186)
T ss_dssp             -----CCCEEEEEECTTCHHHHHH-HHHHHHHHHH-HTTTTTSSEEEEEECCCS-------------CTTHHHHHHHHHH
T ss_pred             cCCCCCCeEEEEEECCCChhHHHH-HHHHHHHHHH-HhccCCeEEEEEEecCcC-------------CcchHHHHHHHHH
Confidence            566788999999999999999999 4667676643 132  3578888887521             1111123344445


Q ss_pred             hcccccccccccchhhhhhhhccc-----CchhhHHHHHHhcCCChhh---hhhcc--cCchhhHHHHHHHHHhhcCCCC
Q 026069          113 AIDSWPELNKHFPFIYCIESLVYE-----HKYSQWETCFDKLELDPKP---IVDCY--TSGYGTQLELKYAAETNSLVPP  182 (244)
Q Consensus       113 ai~~~~~~~~~~~fI~C~~~~~~~-----~~~~~~~~Ca~~~gld~~~---I~~C~--~~~~G~~Ll~~~~~~T~~l~P~  182 (244)
                      +...  .+.++++|..=++.....     ...+.+...++..|+|.+.   +.+|.  ++......+.+..+...++  +
T Consensus        71 a~~~--~~~~~~~~~~~lf~~~~~~~~~~~~~~~l~~~a~~~Gld~~~~~~~~~~~~~~~~~~~~~v~~~~~~a~~~--g  146 (186)
T 3bci_A           71 VLMY--APKSFLDFQKQLFAAQQDENKEWLTKELLDKHIKQLHLDKETENKIIKDYKTKDSKSWKAAEKDKKIAKDN--H  146 (186)
T ss_dssp             HHHH--CGGGHHHHHHHHHHTCCCTTSCCCCHHHHHHHHHTTCCCHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHT--T
T ss_pred             HHHh--CHHHHHHHHHHHHhcCcccCCCCCCHHHHHHHHHHcCCCHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHc--C
Confidence            5433  234677887777654321     2234567889999999988   99999  8877777777766666655  4


Q ss_pred             CceeeEEEECCeech--hhHhHHHHHHHHhh
Q 026069          183 HQYVPWVVVDGQPLY--EDYENFISYVCKAY  211 (244)
Q Consensus       183 ~~~vP~I~ING~~~~--~a~~nL~~~IC~~y  211 (244)
                      +..+|+++|||+.+.  ...+.|.++|=...
T Consensus       147 v~GtPt~vvnG~~~~G~~~~~~l~~~i~~~~  177 (186)
T 3bci_A          147 IKTTPTAFINGEKVEDPYDYESYEKLLKDKI  177 (186)
T ss_dssp             CCSSSEEEETTEECSCTTCHHHHHHHHHC--
T ss_pred             CCCCCeEEECCEEcCCCCCHHHHHHHHHHHH
Confidence            999999999998763  34667777765444

>2rem_A Disulfide oxidoreductase; disulfide oxidoreductase, DSBA, thioredoxin fold, redox- active center; 1.90A {Xylella fastidiosa}

Probab=98.94  E-value=5.5e-09  Score=86.00  Aligned_cols=152  Identities=14%  Similarity=0.042  Sum_probs=102.2

Q ss_pred             CCCC-CCceEEEEEEEeCChhhHHHHHHHHHHHHhhccCCcceeEEEEeeecceecCCCCceeecCChhhhccchhhhhh
Q 026069           35 PSDV-NSKVKLGLYYESLCPYSANFIINYLVKIFEDVDLLSIVDLHLSPWGNAKIRANNSTFDCQHGPSECLLNTVEACA  113 (244)
Q Consensus        35 ~~~~-~~kV~V~vYyESlCPds~~Fi~~qL~P~~~~~~l~~~idl~lvP~G~a~~~~~~~~f~CQHG~~EC~gN~lqaCa  113 (244)
                      .+.. +.+|+|.+|+...||+|..|. ..|.++.++  ..+.+.|+.+|+...   .+ +          =...+.-.|+
T Consensus        19 ~g~~~~a~v~i~~f~d~~Cp~C~~~~-~~l~~l~~~--~~~~v~~~~~p~~~~---~~-s----------~~a~~a~~~a   81 (193)
T 2rem_A           19 PFAPLAGKIEVVEIFGYTCPHCAHFD-SKLQAWGAR--QAKDVRFTLVPAVFG---GV-W----------DPFARAYLAA   81 (193)
T ss_dssp             CSSCCTTCEEEEEEECTTCHHHHHHH-HHHHHHHHT--SCTTEEEEEEECCCS---TT-H----------HHHHHHHHHH
T ss_pred             CCCCCCCCeEEEEEECCCChhHhhhh-HHHHHHHHh--cCCceEEEEeCcccC---CC-c----------HHHHHHHHHH
Confidence            4555 789999999999999999994 667766665  666788888887421   10 0          0122223333


Q ss_pred             cccccccccccchhhhhhhhcc--------cCchhhHHHHHHhcCCChhhhhhcccCchhhHHHHHHHHHhhcCCCCCce
Q 026069          114 IDSWPELNKHFPFIYCIESLVY--------EHKYSQWETCFDKLELDPKPIVDCYTSGYGTQLELKYAAETNSLVPPHQY  185 (244)
Q Consensus       114 i~~~~~~~~~~~fI~C~~~~~~--------~~~~~~~~~Ca~~~gld~~~I~~C~~~~~G~~Ll~~~~~~T~~l~P~~~~  185 (244)
                      ..    ...+++|..-++....        ....+.+...++..|+|.+.+.+|.++.+....+.+..+....+.  +..
T Consensus        82 ~~----~~~~~~~~~~lf~~~~~~~~~~~~~~~~~~l~~~a~~~Gld~~~~~~~~~~~~~~~~v~~~~~~a~~~g--v~g  155 (193)
T 2rem_A           82 DV----LGVAKRSHTAMFEAIHEKGSVPIQNVGPDELAVFYAGYGVQPDRFVATFNGPEVEKRFQAARAYALKVR--PVG  155 (193)
T ss_dssp             HH----TTCHHHHHHHHHHHHHTTCCSCSTTCCHHHHHHHHHTTTCCHHHHHHHHTSHHHHHHHHHHHHHHHHHC--CSS
T ss_pred             HH----cCcHHHHHHHHHHHHHHhcccCcCCCCHHHHHHHHHHcCCCHHHHHHHHhChHHHHHHHHHHHHHHHhC--CCC
Confidence            22    2345666666654321        123345678899999999999999999888888877766666554  899


Q ss_pred             eeEEEECCeec--hhhHhHHHHHHHH
Q 026069          186 VPWVVVDGQPL--YEDYENFISYVCK  209 (244)
Q Consensus       186 vP~I~ING~~~--~~a~~nL~~~IC~  209 (244)
                      +|+++|||+..  +...+.|.++|=.
T Consensus       156 tPt~ving~~~~~g~~~~~l~~~i~~  181 (193)
T 2rem_A          156 TPTIVVNGRYMVTGHDFEDTLRITDY  181 (193)
T ss_dssp             SSEEEETTTEEECCSSHHHHHHHHHH
T ss_pred             CCeEEECCEEEecCCCHHHHHHHHHH
Confidence            99999999864  2234555555543

>3f4s_A Alpha-DSBA1, putative uncharacterized protein; thioredoxin-fold, oxidoreductase; HET: PGE; 1.55A {Wolbachia pipientis} PDB: 3f4r_A* 3f4t_A*

Probab=98.94  E-value=3.4e-09  Score=91.68  Aligned_cols=159  Identities=10%  Similarity=0.082  Sum_probs=111.2

Q ss_pred             CCCCCCCCCCceEEEEEEEeCChhhHHHHHHHHHHHHhhccC--CcceeEEEEeeecceecCCCCceeecCChhhhccch
Q 026069           31 SRTSPSDVNSKVKLGLYYESLCPYSANFIINYLVKIFEDVDL--LSIVDLHLSPWGNAKIRANNSTFDCQHGPSECLLNT  108 (244)
Q Consensus        31 ~~~~~~~~~~kV~V~vYyESlCPds~~Fi~~qL~P~~~~~~l--~~~idl~lvP~G~a~~~~~~~~f~CQHG~~EC~gN~  108 (244)
                      .+...+..+.+|+|.+|..-.||+|++| ...+.|.+.+ ++  ...|.|.+.+|-- .             +.--.+-+
T Consensus        30 ~~~~~G~~~A~vtIvef~Dy~CP~C~~~-~~~~~~~l~~-~~~~~g~V~~v~~~~p~-~-------------~~s~~Aa~   93 (226)
T 3f4s_A           30 NDKLLGDPKAPILMIEYASLTCYHCSLF-HRNVFPKIKE-KYIDTGKMLYIFRHFPL-D-------------YRGLKAAM   93 (226)
T ss_dssp             TCCEESCTTCSEEEEEEECTTCHHHHHH-HHHTHHHHHH-HHTTTTSEEEEEEECCC-S-------------HHHHHHHH
T ss_pred             CCCccCCCCCCEEEEEEECCCCHHHHHH-HHHHHHHHHH-HcccCCeEEEEEEeCCC-C-------------hhHHHHHH
Confidence            3455788899999999999999999999 4556676653 13  2456666655532 1             00112334


Q ss_pred             hhhhhcccccccccccchhhhhhhhccc------CchhhHHHHHHhcCCChhhhhhcccCchhhHHHHHHHHHhhc-CCC
Q 026069          109 VEACAIDSWPELNKHFPFIYCIESLVYE------HKYSQWETCFDKLELDPKPIVDCYTSGYGTQLELKYAAETNS-LVP  181 (244)
Q Consensus       109 lqaCai~~~~~~~~~~~fI~C~~~~~~~------~~~~~~~~Ca~~~gld~~~I~~C~~~~~G~~Ll~~~~~~T~~-l~P  181 (244)
                      ...|+    .++.++|+|..=++.....      ...+.+...++..|+|.+.+.+|.++......+.+..+...+ +. 
T Consensus        94 aa~aa----~~~~~f~~~~~aLF~~q~~~~~~~~~~~~~L~~iA~~~Gld~~~~~~~l~s~~~~~~v~~~~~~a~~~~G-  168 (226)
T 3f4s_A           94 LSHCY----EKQEDYFNFNKAVFNSIDSWNYYNLSDLTLLQRIAALSNLKQDAFNQCINDKKIMDKIVNDKSLAINKLG-  168 (226)
T ss_dssp             HGGGC----CSHHHHHHHHHHHHHTGGGSCSSSTTCCHHHHHHHHHTTCCHHHHHHHHTCHHHHHHHHHHHHHHHHHHC-
T ss_pred             HHHHh----hChHHHHHHHHHHHHhCHhhcccccCcHHHHHHHHHHcCCCHHHHHHHHhCHHHHHHHHHHHHHHHHHcC-
Confidence            45555    2456788888888765321      133457788999999999999999998888777777776665 54 


Q ss_pred             CCceeeEEEE---CCeech--hh--------HhHHHHHHHHhh
Q 026069          182 PHQYVPWVVV---DGQPLY--ED--------YENFISYVCKAY  211 (244)
Q Consensus       182 ~~~~vP~I~I---NG~~~~--~a--------~~nL~~~IC~~y  211 (244)
                       ++.+|+++|   ||+...  ..        .+.|.++|=...
T Consensus       169 -V~GtPtfvv~~~nG~~~~Ga~~~~~~G~~~~e~l~~~I~~~l  210 (226)
T 3f4s_A          169 -ITAVPIFFIKLNDDKSYIEHNKVKHGGYKELKYFTNVIDKLY  210 (226)
T ss_dssp             -CCSSCEEEEEECCTTCCCCGGGGEEESCCCHHHHHHHHHHHH
T ss_pred             -CCcCCEEEEEcCCCEEeeCCCCcccccccCHHHHHHHHHHHH
Confidence             899999999   998763  23        677887776554

>4dvc_A Thiol:disulfide interchange protein DSBA; pilus assembly, oxidoreductase, thioredoxin fold, D disulfide bond, DSBB; HET: DMS; 1.20A {Vibrio cholerae} PDB: 2ijy_A 1bed_A

Probab=98.87  E-value=1.2e-08  Score=82.68  Aligned_cols=151  Identities=11%  Similarity=0.095  Sum_probs=94.9

Q ss_pred             CCCCceEEEEEEEeCChhhHHHHHHHHHHHHhhccCCcceeEEEEeeecceecCCCCceeecCChhhhccchhhhhhccc
Q 026069           37 DVNSKVKLGLYYESLCPYSANFIINYLVKIFEDVDLLSIVDLHLSPWGNAKIRANNSTFDCQHGPSECLLNTVEACAIDS  116 (244)
Q Consensus        37 ~~~~kV~V~vYyESlCPds~~Fi~~qL~P~~~~~~l~~~idl~lvP~G~a~~~~~~~~f~CQHG~~EC~gN~lqaCai~~  116 (244)
                      +.+.+++|..|..-.||+|++| ...+.++.++  ..+.+.+.++|+--......           . ..-...+|+...
T Consensus        18 p~~~~~~vvEf~dy~Cp~C~~~-~~~~~~l~~~--~~~~~~~~~~~~~~~~~~~~-----------~-~~a~a~~~~~~~   82 (184)
T 4dvc_A           18 PASSSPVVSEFFSFYCPHCNTF-EPIIAQLKQQ--LPEGAKFQKNHVSFMGGNMG-----------Q-AMSKAYATMIAL   82 (184)
T ss_dssp             CCCSSCEEEEEECTTCHHHHHH-HHHHHHHHHT--SCTTCEEEEEECSSSSGGGH-----------H-HHHHHHHHHHHH
T ss_pred             CCCCCCEEEEEECCCCHhHHHH-hHHHHHHHhh--cCCceEEEEEecCCCCCchH-----------H-HHHHHHHHHHHc
Confidence            4457889999999999999999 5677777765  76777777766532110000           0 011122222111


Q ss_pred             ccccccccchhhhhhhh-----cccCchhhHHHHHHhcCCChhhhhhcccCchhhHHHHHHHHHhhcCCCCCceeeEEEE
Q 026069          117 WPELNKHFPFIYCIESL-----VYEHKYSQWETCFDKLELDPKPIVDCYTSGYGTQLELKYAAETNSLVPPHQYVPWVVV  191 (244)
Q Consensus       117 ~~~~~~~~~fI~C~~~~-----~~~~~~~~~~~Ca~~~gld~~~I~~C~~~~~G~~Ll~~~~~~T~~l~P~~~~vP~I~I  191 (244)
                          ..++.+..=+...     ........+..=+...|+|.+.+.+|.++..-...+.+..+....+.  ++.+|+++|
T Consensus        83 ----~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~a~~~Gld~~~~~~~~~s~~~~~~v~~~~~~a~~~g--v~gTPtfiI  156 (184)
T 4dvc_A           83 ----EVEDKMVPVMFNRIHTLRKPPKDEQELRQIFLDEGIDAAKFDAAYNGFAVDSMVHRFDKQFQDSG--LTGVPAVVV  156 (184)
T ss_dssp             ----TCHHHHHHHHHHHHHTSCCCCSSHHHHHHHHHTTTCCHHHHHHHHTSHHHHHHHHHHHHHHHHHT--CCSSSEEEE
T ss_pred             ----CcHHHHHHHHHHHHHHHhhccchHHHHHHHHHHhCCCHHHHHHHHhCHHHHHHHHHHHHHHHHcC--CCcCCEEEE
Confidence                1122222112111     11122344567788899999999999999888888887777777655  999999999


Q ss_pred             CCeec--h---hhHhHHHHHHH
Q 026069          192 DGQPL--Y---EDYENFISYVC  208 (244)
Q Consensus       192 NG~~~--~---~a~~nL~~~IC  208 (244)
                      ||++.  .   ...++|.++|=
T Consensus       157 NGky~v~~~~~~s~e~~~~~i~  178 (184)
T 4dvc_A          157 NNRYLVQGQSAKSLDEYFDLVN  178 (184)
T ss_dssp             TTTEEECGGGCSSHHHHHHHHH
T ss_pred             CCEEeeCCcCCCCHHHHHHHHH
Confidence            99853  1   24667777763

>3h93_A Thiol:disulfide interchange protein DSBA; disulfide bond, redox-active center, transcription regulator; HET: MSE GOL; 1.50A {Pseudomonas aeruginosa PAO1} SCOP: c.47.1.0

Probab=98.86  E-value=1.5e-08  Score=83.77  Aligned_cols=149  Identities=13%  Similarity=0.007  Sum_probs=101.4

Q ss_pred             CCCCceEEEEEEEeCChhhHHHHHHHHHHHHhhccCCcceeEEEEeeecceecCCCCceeecCChhhhccchhhhhhccc
Q 026069           37 DVNSKVKLGLYYESLCPYSANFIINYLVKIFEDVDLLSIVDLHLSPWGNAKIRANNSTFDCQHGPSECLLNTVEACAIDS  116 (244)
Q Consensus        37 ~~~~kV~V~vYyESlCPds~~Fi~~qL~P~~~~~~l~~~idl~lvP~G~a~~~~~~~~f~CQHG~~EC~gN~lqaCai~~  116 (244)
                      ..+.+|.|.+|+...||+|++|. ..|..+.++  +.+.+.|+.+|.....             ... ...+...|+.  
T Consensus        22 ~~~~~~~i~~f~d~~Cp~C~~~~-~~l~~l~~~--~~~~v~~~~~p~~~~~-------------~~~-~aa~a~~aa~--   82 (192)
T 3h93_A           22 SQPGKIEVVELFWYGCPHCYAFE-PTIVPWSEK--LPADVHFVRLPALFGG-------------IWN-VHGQMFLTLE--   82 (192)
T ss_dssp             SSTTSEEEEEEECTTCHHHHHHH-HHHHHHHHT--CCTTEEEEEEECCCST-------------HHH-HHHHHHHHHH--
T ss_pred             CCCCCCEEEEEECCCChhHHHhh-HHHHHHHHh--CCCCeEEEEEehhhcc-------------chH-HHHHHHHHHH--
Confidence            45789999999999999999994 455444443  6677888877763211             000 0112223332  


Q ss_pred             ccccccccchhhhhhhhcc-----cCchhhHHHHHHhcCCChhhhhhcccCchhhHHHHHHHHHhhcCCCCCceeeEEEE
Q 026069          117 WPELNKHFPFIYCIESLVY-----EHKYSQWETCFDKLELDPKPIVDCYTSGYGTQLELKYAAETNSLVPPHQYVPWVVV  191 (244)
Q Consensus       117 ~~~~~~~~~fI~C~~~~~~-----~~~~~~~~~Ca~~~gld~~~I~~C~~~~~G~~Ll~~~~~~T~~l~P~~~~vP~I~I  191 (244)
                        ...++++|..-++....     ....+.+...+...|+|.+.+.+|.++......+.+..+...++.  +..+||++|
T Consensus        83 --~~g~~~~~~~~lf~~~~~~~~~~~~~~~l~~~a~~~Gld~~~~~~~~~~~~~~~~v~~~~~~a~~~g--v~gtPt~~v  158 (192)
T 3h93_A           83 --SMGVEHDVHNAVFEAIHKEHKKLATPEEMADFLAGKGVDKEKFLSTYNSFAIKGQMEKAKKLAMAYQ--VTGVPTMVV  158 (192)
T ss_dssp             --HHTCCHHHHHHHHHHHHTSCCCCCSHHHHHHHHHTTTCCHHHHHHHHTCHHHHHHHHHHHHHHHHHT--CCSSSEEEE
T ss_pred             --HcCCHHHHHHHHHHHHHHhCcCCCCHHHHHHHHHHcCCCHHHHHHHhhCHHHHHHHHHHHHHHHHhC--CCCCCeEEE
Confidence              22456777777765421     123456778899999999999999999988888888877776654  899999999


Q ss_pred             CCeech-----hhHhHHHHHHH
Q 026069          192 DGQPLY-----EDYENFISYVC  208 (244)
Q Consensus       192 NG~~~~-----~a~~nL~~~IC  208 (244)
                      ||+...     ...+.|.++|=
T Consensus       159 ng~~~~~~~G~~~~e~l~~~i~  180 (192)
T 3h93_A          159 NGKYRFDIGSAGGPEETLKLAD  180 (192)
T ss_dssp             TTTEEEEHHHHTSHHHHHHHHH
T ss_pred             CCEEEecccccCCHHHHHHHHH
Confidence            998642     13455555553

>3hd5_A Thiol:disulfide interchange protein DSBA; protein structure initiative II(PSI II), NYSGXRC, structural genomics; 2.35A {Bordetella parapertussis}

Probab=98.86  E-value=2.9e-08  Score=82.24  Aligned_cols=149  Identities=10%  Similarity=-0.025  Sum_probs=100.9

Q ss_pred             CCCCceEEEEEEEeCChhhHHHHHHHHHHHHhhccCCcceeEEEEeeecceecCCCCceeecCChhhhccchhhhhhccc
Q 026069           37 DVNSKVKLGLYYESLCPYSANFIINYLVKIFEDVDLLSIVDLHLSPWGNAKIRANNSTFDCQHGPSECLLNTVEACAIDS  116 (244)
Q Consensus        37 ~~~~kV~V~vYyESlCPds~~Fi~~qL~P~~~~~~l~~~idl~lvP~G~a~~~~~~~~f~CQHG~~EC~gN~lqaCai~~  116 (244)
                      ..+.++.|.+|+...||+|++|. ..|..+.++  +.+.+.|..+|.......              =...+...|+...
T Consensus        22 ~~~~~~~vv~f~d~~Cp~C~~~~-~~l~~l~~~--~~~~v~~~~~~~~~~~~s--------------~~aa~a~~aa~~~   84 (195)
T 3hd5_A           22 DTPGKIEVLEFFAYTCPHCAAIE-PMVEDWAKT--APQDVVLKQVPIAFNAGM--------------KPLQQLYYTLQAL   84 (195)
T ss_dssp             SSTTCEEEEEEECTTCHHHHHHH-HHHHHHHHT--CCTTEEEEEEECCSSGGG--------------HHHHHHHHHHHHT
T ss_pred             CCCCCeEEEEEECCCCccHHHhh-HHHHHHHHH--CCCCeEEEEEecccCcch--------------HHHHHHHHHHHhc
Confidence            45689999999999999999994 455555554  666777888776421100              0122333344221


Q ss_pred             ccccccccchhhhhhhhcc-----cCchhhHHHHHHhcCCChhhhhhcccCchhhHHHHHHHHHhhcCCCCCceeeEEEE
Q 026069          117 WPELNKHFPFIYCIESLVY-----EHKYSQWETCFDKLELDPKPIVDCYTSGYGTQLELKYAAETNSLVPPHQYVPWVVV  191 (244)
Q Consensus       117 ~~~~~~~~~fI~C~~~~~~-----~~~~~~~~~Ca~~~gld~~~I~~C~~~~~G~~Ll~~~~~~T~~l~P~~~~vP~I~I  191 (244)
                          . +++|..=++....     ....+.+...++..|+|.+.+.+|.++.+....+.+..+...++.  +..+|+++|
T Consensus        85 ----g-~~~~~~~lf~~~~~~~~~~~~~~~l~~~a~~~Gld~~~~~~~~~s~~~~~~v~~~~~~a~~~g--v~gtPt~vi  157 (195)
T 3hd5_A           85 ----E-RPDLHPKVFTAIHTERKRLFDKKAMGEWAASQGVDRAKFDSVFDSFSVQTQVQRASQLAEAAH--IDGTPAFAV  157 (195)
T ss_dssp             ----T-CTTHHHHHHHHHHTSCCCCCSHHHHHHHHHHTTCCHHHHHHHHTCHHHHHHHHHHHHHHHHTT--CCSSSEEEE
T ss_pred             ----C-HHHHHHHHHHHHHHhccCCCCHHHHHHHHHHhCCCHHHHHHHHcCHHHHHHHHHHHHHHHHhC--CCcCceEEE
Confidence                1 5566555544321     123345778899999999999999999998888888888877654  899999999


Q ss_pred             CCeech---h--hH-hHHHHHHHH
Q 026069          192 DGQPLY---E--DY-ENFISYVCK  209 (244)
Q Consensus       192 NG~~~~---~--a~-~nL~~~IC~  209 (244)
                      ||+...   .  .. +.|.++|=.
T Consensus       158 ng~~~~~g~~~~~~~e~~~~~i~~  181 (195)
T 3hd5_A          158 GGRYMTSPVLAGNDYAGALKVVDQ  181 (195)
T ss_dssp             TTTEEECTTTTTGGGTTHHHHHHH
T ss_pred             CCEEEeCccccCChHHHHHHHHHH
Confidence            998652   1  23 566666543

>2znm_A Thiol:disulfide interchange protein DSBA; thioredoxin fold, DSBA-like, oxidoreductase; 2.30A {Neisseria meningitidis serogroup B} PDB: 3dvx_A

Probab=98.79  E-value=1.7e-08  Score=83.37  Aligned_cols=153  Identities=16%  Similarity=0.135  Sum_probs=103.1

Q ss_pred             CCCCCCCceEEEEEEEeCChhhHHHHHHHHHHHHhhccCCcceeEEEEeeecceecCCCCceeecCChhhhccchhhhhh
Q 026069           34 SPSDVNSKVKLGLYYESLCPYSANFIINYLVKIFEDVDLLSIVDLHLSPWGNAKIRANNSTFDCQHGPSECLLNTVEACA  113 (244)
Q Consensus        34 ~~~~~~~kV~V~vYyESlCPds~~Fi~~qL~P~~~~~~l~~~idl~lvP~G~a~~~~~~~~f~CQHG~~EC~gN~lqaCa  113 (244)
                      ..+..+.+|.|.+|+...||+|.+|. ..|..+.++  ..+.+.|+.+|..-..             .. -...+.-.|+
T Consensus        16 ~~g~~~~~~~i~~f~d~~Cp~C~~~~-~~l~~l~~~--~~~~v~~~~~p~~~~~-------------~s-~~aa~a~~aa   78 (195)
T 2znm_A           16 IPQEQSGKIEVLEFFGYFCVHCHHFD-PLLLKLGKA--LPSDAYLRTEHVVWQP-------------EM-LGLARMAAAV   78 (195)
T ss_dssp             CCCSSSSSEEEEEEECTTSCCTTSSC-HHHHHHHHH--SCTTEEEEEEECCCSG-------------GG-HHHHHHHHHH
T ss_pred             CCCCCCCCcEEEEEECCCChhHHHHh-HHHHHHHHH--CCCceEEEEeccccCc-------------cc-HHHHHHHHHH
Confidence            35667789999999999999999994 567666665  5566888888863110             00 0122333333


Q ss_pred             cccccccccccchhhhhhhhcc-----cCchhhHHHHHHhc-CCChhhhhhcccCchhhHHHHHHHHHhhcCCCCCceee
Q 026069          114 IDSWPELNKHFPFIYCIESLVY-----EHKYSQWETCFDKL-ELDPKPIVDCYTSGYGTQLELKYAAETNSLVPPHQYVP  187 (244)
Q Consensus       114 i~~~~~~~~~~~fI~C~~~~~~-----~~~~~~~~~Ca~~~-gld~~~I~~C~~~~~G~~Ll~~~~~~T~~l~P~~~~vP  187 (244)
                      .    ....+++|..-++....     ....+.+...+... |+|.+.+.+|.++.+....+.+..+....+.  +..+|
T Consensus        79 ~----~~~~~~~~~~~lf~~~~~~~~~~~~~~~l~~~a~~~~Gld~~~~~~~~~~~~~~~~v~~~~~~a~~~g--v~gtP  152 (195)
T 2znm_A           79 N----LSGLKYQANPAVFKAVYEQKIRLENRSVAGKWALSQKGFDGKKLMRAYDSPEAAAAALKMQKLTEQYR--IDSTP  152 (195)
T ss_dssp             H----HHTCHHHHHHHHHHHHHHCSSCTTSHHHHHHHHHTCSSSCHHHHHHHHTSHHHHHHHHHHHHHHHHTT--CCSSS
T ss_pred             H----HcCcHHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHcCCCCHHHHHHHhcCHHHHHHHHHHHHHHHHcC--CCCCC
Confidence            2    22456777766654321     12334567889999 9999999999999888888887777766654  89999


Q ss_pred             EEEECCee-c-h-hhHhHHHHHHHH
Q 026069          188 WVVVDGQP-L-Y-EDYENFISYVCK  209 (244)
Q Consensus       188 ~I~ING~~-~-~-~a~~nL~~~IC~  209 (244)
                      +++|||+. + + ...+.|.++|=.
T Consensus       153 t~ving~~~~~g~~~~~~l~~~i~~  177 (195)
T 2znm_A          153 TVIVGGKYRVIFNNGFDGGVHTIKE  177 (195)
T ss_dssp             EEEETTTEEECCCSHHHHHHHHHHH
T ss_pred             eEEECCEEEEcCCCCHHHHHHHHHH
Confidence            99999985 3 2 234454444433

>3hz8_A Thiol:disulfide interchange protein DSBA; thiol-oxidoreductase, disulfide bond; 1.45A {Neisseria meningitidis MC58} PDB: 3dvw_A 3a3t_A

Probab=98.69  E-value=1.1e-07  Score=79.53  Aligned_cols=149  Identities=17%  Similarity=0.106  Sum_probs=96.7

Q ss_pred             CCCCceEEEEEEEeCChhhHHHHHHHHHHHHhhccCCcceeEEEEeeecceecCCCCceeecCChhhhccchhhhhhccc
Q 026069           37 DVNSKVKLGLYYESLCPYSANFIINYLVKIFEDVDLLSIVDLHLSPWGNAKIRANNSTFDCQHGPSECLLNTVEACAIDS  116 (244)
Q Consensus        37 ~~~~kV~V~vYyESlCPds~~Fi~~qL~P~~~~~~l~~~idl~lvP~G~a~~~~~~~~f~CQHG~~EC~gN~lqaCai~~  116 (244)
                      ..+.+|.|..|+.-.||+|++| ...|..+.++  +.+.+.|+.+|.....             .. =...+.-.|+...
T Consensus        21 ~~~~~v~vv~f~d~~Cp~C~~~-~~~l~~~~~~--~~~~v~~~~~p~~~~~-------------~~-~~aa~a~~aa~~~   83 (193)
T 3hz8_A           21 QQAGKVEVLEFFGYFCPHCAHL-EPVLSKHAKS--FKDDMYLRTEHVVWQK-------------EM-LTLARLAAAVDMA   83 (193)
T ss_dssp             SSTTSEEEEEEECTTCHHHHHH-HHHHHHHHTT--CCTTEEEEEEECCCSG-------------GG-HHHHHHHHHHHHH
T ss_pred             CCCCCcEEEEEECCCChhHHHH-HHHHHHHHHH--CCCCeEEEEecCCCCc-------------cc-HHHHHHHHHHHHc
Confidence            3457999999999999999999 4555555544  6667788888874211             00 0122333444221


Q ss_pred             ccccccccc--hhhhhhhhc-----ccCchhhHHHHHHhc-CCChhhhhhcccCchhhHHHHHHHHHhhcCCCCCceeeE
Q 026069          117 WPELNKHFP--FIYCIESLV-----YEHKYSQWETCFDKL-ELDPKPIVDCYTSGYGTQLELKYAAETNSLVPPHQYVPW  188 (244)
Q Consensus       117 ~~~~~~~~~--fI~C~~~~~-----~~~~~~~~~~Ca~~~-gld~~~I~~C~~~~~G~~Ll~~~~~~T~~l~P~~~~vP~  188 (244)
                          ..+++  +..=+....     .....+.+...+... |+|.+.+.+|.++......+.+..+...++.  ++.+|+
T Consensus        84 ----g~~~~~~~~~~lf~a~~~~~~~~~~~~~l~~~a~~~~Gld~~~~~~~~~s~~~~~~v~~~~~~a~~~g--v~gtPt  157 (193)
T 3hz8_A           84 ----AADSKDVANSHIFDAMVNQKIKLQNPEVLKKWLGEQTAFDGKKVLAAYESPESQARADKMQELTETFQ--IDGVPT  157 (193)
T ss_dssp             ----TGGGHHHHHHHHHHHHHTSCCCTTSHHHHHHHHHHCTTTTHHHHHHHHHSHHHHHHHHHHHHHHHHTT--CCSSSE
T ss_pred             ----CchhHHhHHHHHHHHHHHhCcCCCCHHHHHHHHHHccCCCHHHHHHHHcCHHHHHHHHHHHHHHHHhC--CCcCCE
Confidence                12333  333332211     112334567888999 9999999999999888888888777776654  899999


Q ss_pred             EEECCeech--hhHhHHHHHHH
Q 026069          189 VVVDGQPLY--EDYENFISYVC  208 (244)
Q Consensus       189 I~ING~~~~--~a~~nL~~~IC  208 (244)
                      ++|||+...  ...+.|.++|=
T Consensus       158 ~vvng~~~~~~~~~e~l~~~i~  179 (193)
T 3hz8_A          158 VIVGGKYKVEFADWESGMNTID  179 (193)
T ss_dssp             EEETTTEEECCSSHHHHHHHHH
T ss_pred             EEECCEEEecCCCHHHHHHHHH
Confidence            999998652  13455555543

>3gn3_A Putative protein-disulfide isomerase; MCSG, PSI, structural GEN protein structure initiative, midwest center for structural genomics; 2.50A {Pseudomonas syringae PV}

Probab=98.61  E-value=3e-07  Score=76.77  Aligned_cols=147  Identities=9%  Similarity=0.029  Sum_probs=96.4

Q ss_pred             CCceEEEEEEEeCChhhHHHHHHHHHHHHhhccCCcceeEEEEeeecceecCCCCceeecCChhhhccchhhhhhcc---
Q 026069           39 NSKVKLGLYYESLCPYSANFIINYLVKIFEDVDLLSIVDLHLSPWGNAKIRANNSTFDCQHGPSECLLNTVEACAID---  115 (244)
Q Consensus        39 ~~kV~V~vYyESlCPds~~Fi~~qL~P~~~~~~l~~~idl~lvP~G~a~~~~~~~~f~CQHG~~EC~gN~lqaCai~---  115 (244)
                      +.+|+|.+|..-.||+|.+| ...+.|.+++. ..+.|.|.+.+|--. ...+              .-....+++.   
T Consensus        13 ~a~vtiv~f~D~~Cp~C~~~-~~~~~~~l~~~-~~g~v~~v~r~~p~~-~h~~--------------s~~aaraa~aa~~   75 (182)
T 3gn3_A           13 HGPRLFEVFLEPTCPFSVKA-FFKLDDLLAQA-GEDNVTVRIRLQSQP-WHMF--------------SGVIVRCILAAAT   75 (182)
T ss_dssp             CCSEEEEEEECTTCHHHHHH-HTTHHHHHHHH-CTTTEEEEEEECCCT-TSTT--------------HHHHHHHHHHHTT
T ss_pred             CCCEEEEEEECCCCHhHHHH-HHHHHHHHHHh-CCCCEEEEEEEcCCC-CCcc--------------HHHHHHHHHHHHH
Confidence            78999999999999999999 57788887762 366777776666421 1111              1122223222   


Q ss_pred             cccccccccchhhhhhhhccc--------------CchhhHHHHHHhcCCChhhhhhcccCchhhHHHHHHHHHhhcCCC
Q 026069          116 SWPELNKHFPFIYCIESLVYE--------------HKYSQWETCFDKLELDPKPIVDCYTSGYGTQLELKYAAETNSLVP  181 (244)
Q Consensus       116 ~~~~~~~~~~fI~C~~~~~~~--------------~~~~~~~~Ca~~~gld~~~I~~C~~~~~G~~Ll~~~~~~T~~l~P  181 (244)
                      .-+...++|+|..-++..+..              ++.+.+..-++..|+|.+.+   .++.+...-+.+..+...++  
T Consensus        76 ~~~~~~~f~~~~~aLf~~q~~~~~~~~~~~~~~~~~~~~~l~~~a~~~Gld~~~~---l~~~~~~~~v~~~~~~a~~~--  150 (182)
T 3gn3_A           76 LEGGKESAKAVMTAVASHREEFEFEHHAGGPNLDATPNDIIARIERYSGLALAEA---FANPELEHAVKWHTKYARQN--  150 (182)
T ss_dssp             STTHHHHHHHHHHHHHHTGGGGSCBTTTBSGGGGCCHHHHHHHHHHHHTCCCHHH---HHCGGGHHHHHHHHHHHHHH--
T ss_pred             hccChHHHHHHHHHHHhcCcccccccccccccCCCCHHHHHHHHHHHhCCCHHHH---hcChHHHHHHHHHHHHHHHC--
Confidence            111225789999888765311              12244667888999998776   55666666666655555554  


Q ss_pred             CCceeeEEEECCeech-----hhHhHHHHHH
Q 026069          182 PHQYVPWVVVDGQPLY-----EDYENFISYV  207 (244)
Q Consensus       182 ~~~~vP~I~ING~~~~-----~a~~nL~~~I  207 (244)
                      +++.+|+++|||+...     ...+.+.++|
T Consensus       151 GV~gtPtf~ing~~~~~~s~~~~~e~w~~~l  181 (182)
T 3gn3_A          151 GIHVSPTFMINGLVQPGMSSGDPVSKWVSDI  181 (182)
T ss_dssp             TCCSSSEEEETTEECTTCCTTSCHHHHHHHH
T ss_pred             CCCccCEEEECCEEccCCCCCCCHHHHHHHh
Confidence            4899999999999863     2456666654

>1z6m_A Conserved hypothetical protein; structural genomics, MCSG,, protein structure initiative, midwest center for structural genomics; HET: MSE; 1.30A {Enterococcus faecalis} SCOP: c.47.1.13

Probab=98.51  E-value=6.8e-07  Score=72.48  Aligned_cols=144  Identities=15%  Similarity=0.161  Sum_probs=87.2

Q ss_pred             CCCCCCceEEEEEEEeCChhhHHHHHHHHHHHHhhccC--CcceeEEEEeeecceecCCCCceeecCChhhhccchhhhh
Q 026069           35 PSDVNSKVKLGLYYESLCPYSANFIINYLVKIFEDVDL--LSIVDLHLSPWGNAKIRANNSTFDCQHGPSECLLNTVEAC  112 (244)
Q Consensus        35 ~~~~~~kV~V~vYyESlCPds~~Fi~~qL~P~~~~~~l--~~~idl~lvP~G~a~~~~~~~~f~CQHG~~EC~gN~lqaC  112 (244)
                      .+..+.+|+|.+|..-.||+|.+| ...+.+.+++  +  .+.+.|.++||.-..  .. .      .    .++..+.|
T Consensus        22 ~G~~~a~v~i~~f~D~~Cp~C~~~-~~~~~~~~~~--~~~~~~v~~~~~~~~~~~--~~-~------~----~a~~~~~~   85 (175)
T 1z6m_A           22 IGESNAPVKMIEFINVRCPYCRKW-FEESEELLAQ--SVKSGKVERIIKLFDKEK--ES-L------Q----RGNVMHHY   85 (175)
T ss_dssp             ESCTTCSEEEEEEECTTCHHHHHH-HHHHHHHHHH--HHHTTSEEEEEEECCCCS--TT-T------H----HHHHHHTT
T ss_pred             cCCCCCCeEEEEEECCCCcchHHH-HHHHHHHHHH--HhhCCcEEEEEEeCCCCc--cc-H------H----HHHHHHHH
Confidence            567789999999999999999999 4667777765  5  567888888775321  00 0      0    13334444


Q ss_pred             hcccccccccccchhhhhhhhccc---CchhhHHHH-HHhcCCChhhhhhcccCchhhHHHHHHHHHhhcCCCCCceeeE
Q 026069          113 AIDSWPELNKHFPFIYCIESLVYE---HKYSQWETC-FDKLELDPKPIVDCYTSGYGTQLELKYAAETNSLVPPHQYVPW  188 (244)
Q Consensus       113 ai~~~~~~~~~~~fI~C~~~~~~~---~~~~~~~~C-a~~~gld~~~I~~C~~~~~G~~Ll~~~~~~T~~l~P~~~~vP~  188 (244)
                      +..  ..+.++++|..=++.....   ...+....- ++..|+|.+.         ....+.+..+....+  ++..+|+
T Consensus        86 ~~~--~~~~~~~~~~~~lf~~~~~~~~~~~~~l~~~a~~~~Gld~~~---------~~~~~~~~~~~a~~~--gv~gtPt  152 (175)
T 1z6m_A           86 IDY--SAPEQALSALHKMFATQDEWGNLTLEEVATYAEKNLGLKEQK---------DATLVSAVIAEANAA--HIQFVPT  152 (175)
T ss_dssp             CCT--TCHHHHHHHHHHHHHTHHHHTTSCHHHHHHHHHHTSCCCCCC---------CHHHHHHHHHHHHHH--TCCSSCE
T ss_pred             HHh--cChHHHHHHHHHHHHcChhhccCCHHHHHHHHHHhcCCCccc---------CHHHHHHHHHHHHHc--CCCCcCe
Confidence            322  2445667777777654311   011223333 4568887641         123344444444443  4899999


Q ss_pred             EEECCeech--hhHhHHHHHH
Q 026069          189 VVVDGQPLY--EDYENFISYV  207 (244)
Q Consensus       189 I~ING~~~~--~a~~nL~~~I  207 (244)
                      ++|||+.+.  ...+.|.++|
T Consensus       153 ~vvng~~~~G~~~~~~l~~~i  173 (175)
T 1z6m_A          153 IIIGEYIFDESVTEEELRGYI  173 (175)
T ss_dssp             EEETTEEECTTCCHHHHHHHH
T ss_pred             EEECCEEccCCCCHHHHHHHh
Confidence            999998763  2455666554

>3l9v_A Putative thiol-disulfide isomerase or thioredoxin; thioredoxin-fold, SRGA, thiol-disulfide oxidoreductase, ISOM oxidoreductase; HET: PE8 P4C P6G; 2.15A {Salmonella enterica subsp} SCOP: c.47.1.0

Probab=98.43  E-value=3.6e-07  Score=76.10  Aligned_cols=155  Identities=12%  Similarity=-0.047  Sum_probs=95.1

Q ss_pred             CCceEEEEEEEeCChhhHHHHHHHH--HHHHhhccCCcceeEEEEeeecceecCCCCceeecCChhhhccchhhhhhccc
Q 026069           39 NSKVKLGLYYESLCPYSANFIINYL--VKIFEDVDLLSIVDLHLSPWGNAKIRANNSTFDCQHGPSECLLNTVEACAIDS  116 (244)
Q Consensus        39 ~~kV~V~vYyESlCPds~~Fi~~qL--~P~~~~~~l~~~idl~lvP~G~a~~~~~~~~f~CQHG~~EC~gN~lqaCai~~  116 (244)
                      ..++.|..|+.-.||+|++|- ..|  .+.+.+ .+.+.+.|.++|+.-..  .. +       .   ...+.-.|+...
T Consensus        13 ~~~~~vvef~d~~Cp~C~~~~-~~~~~~~~~~~-~~~~~v~~~~~~~~~~~--~~-s-------~---~aa~a~~aA~~~   77 (189)
T 3l9v_A           13 VDAPAVVEFFSFYCPPCYAFS-QTMGVDQAIRH-VLPQGSRMVKYHVSLLG--PL-G-------H---ELTRAWALAMVM   77 (189)
T ss_dssp             TTCCSEEEEECTTCHHHHHHH-HTSCHHHHHHT-TCCTTCCEEEEECSSSS--TT-H-------H---HHHHHHHHHHHH
T ss_pred             CCCCEEEEEECCCChhHHHHh-HhccchHHHHH-hCCCCCEEEEEechhcc--cc-c-------H---HHHHHHHHHHHc
Confidence            346789999999999999994 443  466654 46667777777764321  10 0       0   011222333221


Q ss_pred             cccccccc-chhhhhhhhcccCchhhHHHHHHhc-CCChhhhhhcccCchhhHHHHHHHHHhhcCCCCCceeeEEEECCe
Q 026069          117 WPELNKHF-PFIYCIESLVYEHKYSQWETCFDKL-ELDPKPIVDCYTSGYGTQLELKYAAETNSLVPPHQYVPWVVVDGQ  194 (244)
Q Consensus       117 ~~~~~~~~-~fI~C~~~~~~~~~~~~~~~Ca~~~-gld~~~I~~C~~~~~G~~Ll~~~~~~T~~l~P~~~~vP~I~ING~  194 (244)
                      - ...+++ .+..=++........+.+...+... |+|.+.+.+|.++......+.+..+...++.  ++.+|+++|||+
T Consensus        78 g-~~~~~~~~lf~a~~~~~~~~~~~~l~~~a~~~~Gld~~~~~~~~~s~~~~~~v~~~~~~a~~~g--v~GtPt~~vng~  154 (189)
T 3l9v_A           78 K-ETDVIEKAFFTAGMVEKRLHSPDDVRRVFMSATGISRGEYDRSIKSPAVNDMVALQERLFKEYG--VRGTPSVYVRGR  154 (189)
T ss_dssp             T-CHHHHHHHHHHHHTTTCCCCSHHHHHHHHHHHHCCCHHHHHHHTTSHHHHHHHHHHHHHHHHTT--CCSSSEEEETTT
T ss_pred             C-cHHHHHHHHHHHHhhhccCCCHHHHHHHHHHccCCCHHHHHHHHhhHHHHHHHHHHHHHHHHhC--CCccCEEEECCE
Confidence            1 111111 1112222111122334567889999 9999999999999888888888777776654  899999999997


Q ss_pred             ec--hh---h------HhHHHHHHHHhh
Q 026069          195 PL--YE---D------YENFISYVCKAY  211 (244)
Q Consensus       195 ~~--~~---a------~~nL~~~IC~~y  211 (244)
                      ..  +.   .      .+.|.++|=.+.
T Consensus       155 ~~v~~~~~~~~~~~~~~~~~~~~i~~Li  182 (189)
T 3l9v_A          155 YHINNAAFGAFSVENFRSRYAAVVRKLL  182 (189)
T ss_dssp             EEECGGGCCCSSHHHHHHHHHHHHHHHH
T ss_pred             EEECccccccccccchHHHHHHHHHHHH
Confidence            53  21   1      166777665544

>3l9s_A Thiol:disulfide interchange protein; thioredoxin-fold, DSBA, thiol-disulfide oxidoreductase, DISU bond, redox-active center; 1.58A {Salmonella enterica subsp} SCOP: c.47.1.13 PDB: 1a23_A 1a24_A 1a2j_A 1a2l_A 1a2m_A 1dsb_A 1fvk_A 3dks_A 1bq7_A 1fvj_A 1acv_A 1u3a_A* 1ti1_A* 2hi7_A* 2leg_A* 2zup_A* 3e9j_B* 1ac1_A 2b6m_A 2b3s_A

Probab=98.39  E-value=5e-07  Score=75.69  Aligned_cols=139  Identities=13%  Similarity=0.030  Sum_probs=86.2

Q ss_pred             CCCCceEEEEEEEeCChhhHHHHHHHH--HHHHhhccCCcceeEEEEeeecceecCCCCceeecCChhhhccchhhhhhc
Q 026069           37 DVNSKVKLGLYYESLCPYSANFIINYL--VKIFEDVDLLSIVDLHLSPWGNAKIRANNSTFDCQHGPSECLLNTVEACAI  114 (244)
Q Consensus        37 ~~~~kV~V~vYyESlCPds~~Fi~~qL--~P~~~~~~l~~~idl~lvP~G~a~~~~~~~~f~CQHG~~EC~gN~lqaCai  114 (244)
                      +...+|+|..|..-.||+|.+| ...|  .|.|.+ .+.+.+.|.++|+.-..  .. +.          ..-+...++.
T Consensus        18 p~~~~~~vvef~d~~Cp~C~~~-~~~l~~~~~l~~-~~~~~v~~~~~~~~~~~--~~-s~----------~aa~a~~aA~   82 (191)
T 3l9s_A           18 PVAGEPQVLEFFSFYCPHCYQF-EEVLHVSDNVKK-KLPEGTKMTKYHVEFLG--PL-GK----------ELTQAWAVAM   82 (191)
T ss_dssp             CCCSSSCEEEEECTTCHHHHHH-HHTSCHHHHHHH-HSCTTCCEEEEECSSSS--TT-HH----------HHHHHHHHHH
T ss_pred             CCCCCCeEEEEECCCChhHHHh-ChhccchHHHHH-hCCCCcEEEEEeccccc--cc-CH----------HHHHHHHHHH
Confidence            3345899999999999999999 4444  355554 36666777776664211  00 00          0001111111


Q ss_pred             ccccccccccchhhhhhhh----cccCchhhHHHHHHhcCCChhhhhhcccCchhhHHHHHHHHHhhcCCCCCceeeEEE
Q 026069          115 DSWPELNKHFPFIYCIESL----VYEHKYSQWETCFDKLELDPKPIVDCYTSGYGTQLELKYAAETNSLVPPHQYVPWVV  190 (244)
Q Consensus       115 ~~~~~~~~~~~fI~C~~~~----~~~~~~~~~~~Ca~~~gld~~~I~~C~~~~~G~~Ll~~~~~~T~~l~P~~~~vP~I~  190 (244)
                      .. .   ...+|..=+...    ......+.+...+...|+|.+.+.+|.++.+....+.+..+...++.  ++.+|+++
T Consensus        83 ~~-g---~~~~~~~~lf~a~~~~~~~~~~~~L~~~a~~~Gld~~~~~~~~~s~~~~~~v~~~~~~a~~~g--v~gtPtfv  156 (191)
T 3l9s_A           83 AL-G---VEDKVTVPLFEAVQKTQTVQSAADIRKVFVDAGVKGEDYDAAWNSFVVKSLVAQQEKAAADLQ--LQGVPAMF  156 (191)
T ss_dssp             HH-T---CHHHHHHHHHHHHHTSCCCSSHHHHHHHHHHTTCCHHHHHHHHTSHHHHHHHHHHHHHHHHTT--CCSSSEEE
T ss_pred             Hc-C---cHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHcCCCHHHHHHHHhCHHHHHHHHHHHHHHHHhC--CcccCEEE
Confidence            10 0   111222111111    11123445778899999999999999999888888888777777654  99999999


Q ss_pred             ECCeec
Q 026069          191 VDGQPL  196 (244)
Q Consensus       191 ING~~~  196 (244)
                      |||+..
T Consensus       157 vnG~~~  162 (191)
T 3l9s_A          157 VNGKYQ  162 (191)
T ss_dssp             ETTTEE
T ss_pred             ECCEEE
Confidence            999863

>2imf_A HCCA isomerase, 2-hydroxychromene-2-carboxylate isomerase; glutathione, KGST, kappa GST, transferase; HET: GSH TOM CXS; 1.30A {Pseudomonas putida} PDB: 2ime_A* 2imd_A*

Probab=98.29  E-value=8.5e-06  Score=67.99  Aligned_cols=160  Identities=13%  Similarity=0.055  Sum_probs=101.0

Q ss_pred             eEEEEEEEeCChhhHHHHHHHHHHHHhhccCCcceeEEEEee--ecc-eecCC--CC----------------------c
Q 026069           42 VKLGLYYESLCPYSANFIINYLVKIFEDVDLLSIVDLHLSPW--GNA-KIRAN--NS----------------------T   94 (244)
Q Consensus        42 V~V~vYyESlCPds~~Fi~~qL~P~~~~~~l~~~idl~lvP~--G~a-~~~~~--~~----------------------~   94 (244)
                      ++|++|+.-.||.|..+ ...|..+...  ..  ++|++.||  +.. ...+.  +.                      +
T Consensus         1 m~I~~~~D~~CP~cy~~-~~~l~~~~~~--~~--~~v~~~p~~L~~~~~~~g~~~~~~~g~~~~~~~~~~~~~~~a~~~G   75 (203)
T 2imf_A            1 MIVDFYFDFLSPFSYLA-NQRLSKLAQD--YG--LTIRYNAIDLARVKIAIGNVGPSNRDLKVKLDYLKVDLQRWAQLYG   75 (203)
T ss_dssp             CEEEEEECTTCHHHHHH-HHHHHHHHHH--HC--CEEEEEECCHHHHHHHHTCCSCCGGGCHHHHHHHHHHHHHHHHHHT
T ss_pred             CeEEEEEeCCCHHHHHH-HHHHHHHHHH--cC--CeEEEEeeecchhhHhhCCCCcccccChHHHHHHHHHHHHHHHHcC
Confidence            57999999999999988 4666666665  33  77888887  221 10000  00                      0


Q ss_pred             eeecCChhhhccchhhhhhccc-ccccccccchhhhhhhhcc-----cCchhhHHHHHHhcCCChhhhhhcccCchhhHH
Q 026069           95 FDCQHGPSECLLNTVEACAIDS-WPELNKHFPFIYCIESLVY-----EHKYSQWETCFDKLELDPKPIVDCYTSGYGTQL  168 (244)
Q Consensus        95 f~CQHG~~EC~gN~lqaCai~~-~~~~~~~~~fI~C~~~~~~-----~~~~~~~~~Ca~~~gld~~~I~~C~~~~~G~~L  168 (244)
                      +.-.. +.  ..|...++.+-. ...+.++++|..-++....     ....+.+...+.+.|+|.+.+.+|.++.+....
T Consensus        76 ~~~~~-~~--~~~t~~a~r~~~~a~~~g~~~~~~~~lf~a~~~~~~~i~~~~~L~~~a~~~Gld~~~~~~~~~s~~~~~~  152 (203)
T 2imf_A           76 IPLVF-PA--NYNSRRMNIGFYYSGAEAQAAAYVNVVFNAVWGEGIAPDLESLPALVSEKLGWDRSAFEHFLSSNAATER  152 (203)
T ss_dssp             CCCCC-CS--CCCCHHHHHHGGGCCSHHHHHHHHHHHHHHHHHSCCCTTCTTHHHHHHHHHTCCHHHHHHHHHSHHHHHH
T ss_pred             CCCCC-CC--CCChHHHHHHHHHHhCcChHHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHcCCCHHHHHHHhcCHHHHHH
Confidence            00000 00  334443332211 1223456677776665421     123445678899999999999999999888888


Q ss_pred             HHHHHHHhhcCCCCCceeeEEEECCeech--hhHhHHHHHHHHhh
Q 026069          169 ELKYAAETNSLVPPHQYVPWVVVDGQPLY--EDYENFISYVCKAY  211 (244)
Q Consensus       169 l~~~~~~T~~l~P~~~~vP~I~ING~~~~--~a~~nL~~~IC~~y  211 (244)
                      +.+..+...++  ++..+||++|||+...  +..+.|.+.|-...
T Consensus       153 v~~~~~~a~~~--Gv~G~Ptfvi~g~~~~G~~~~~~l~~~l~~~~  195 (203)
T 2imf_A          153 YDEQTHAAIER--KVFGVPTMFLGDEMWWGNDRLFMLESAMGRLC  195 (203)
T ss_dssp             HHHHHHHHHHT--TCCSSSEEEETTEEEESGGGHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHC--CCCcCCEEEECCEEEECCCCHHHHHHHHhccc
Confidence            87777776655  5999999999998652  45666776665543

>3c7m_A Thiol:disulfide interchange protein DSBA-like; redox protein, periplasm, redox-active center, oxidoreductase; HET: PGE; 1.55A {Escherichia coli} PDB: 3l9u_A

Probab=98.27  E-value=1.8e-06  Score=70.62  Aligned_cols=157  Identities=11%  Similarity=0.055  Sum_probs=90.1

Q ss_pred             CCceEEEEEEEeCChhhHHHHHHHHHHHHhhccCCcceeEEEEeeecceecCCCCceeecCChhhhccchhhhhhccc--
Q 026069           39 NSKVKLGLYYESLCPYSANFIINYLVKIFEDVDLLSIVDLHLSPWGNAKIRANNSTFDCQHGPSECLLNTVEACAIDS--  116 (244)
Q Consensus        39 ~~kV~V~vYyESlCPds~~Fi~~qL~P~~~~~~l~~~idl~lvP~G~a~~~~~~~~f~CQHG~~EC~gN~lqaCai~~--  116 (244)
                      +.++.|..|+.-.||.|..| ...|.+.+.+ +..+.+.++.++++...  .  .      |..--..-..-.|+-..  
T Consensus        16 ~~~~~~ief~d~~CP~C~~~-~~~l~~~l~~-~~~~~v~~~~~~l~~~~--~--~------~~~~~~~~~~~~~~~~~~~   83 (195)
T 3c7m_A           16 NADKTLIKVFSYACPFCYKY-DKAVTGPVSE-KVKDIVAFTPFHLETKG--E--Y------GKQASEVFAVLINKDKAAG   83 (195)
T ss_dssp             SCTTEEEEEECTTCHHHHHH-HHHTHHHHHH-HTTTTCEEEEEECTTSS--T--T------HHHHHHHHHHHHHHHHHTT
T ss_pred             CCCcEEEEEEeCcCcchhhC-cHHHHHHHHH-hCCCceEEEEEecCccc--c--c------cHHHHHHHHHHHHhhhhcC
Confidence            45666666888999999998 4666354443 25566777777765421  0  0      00000000011121100  


Q ss_pred             c---cccccccchhhhhhhhcc-----cCchhhHHHH----HHhcCCChhhhhhcccCchhhHHHHHHHHHhhcCCCCCc
Q 026069          117 W---PELNKHFPFIYCIESLVY-----EHKYSQWETC----FDKLELDPKPIVDCYTSGYGTQLELKYAAETNSLVPPHQ  184 (244)
Q Consensus       117 ~---~~~~~~~~fI~C~~~~~~-----~~~~~~~~~C----a~~~gld~~~I~~C~~~~~G~~Ll~~~~~~T~~l~P~~~  184 (244)
                      +   +....+++|+.=+.....     ....+.+...    ++..|+|.+.+.+|.++.+....+.+..+....+  ++.
T Consensus        84 ~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~~~l~~~~~~~a~~~Gld~~~~~~~~~~~~~~~~v~~~~~~a~~~--gv~  161 (195)
T 3c7m_A           84 ISLFDANSQFKKAKFAYYAAYHDKKERWSDGKDPAAFIKTGLDAAGMSQADFEAALKEPAVQETLEKWKASYDVA--KIQ  161 (195)
T ss_dssp             CCTTSTTCHHHHHHHHHHHHHHTSCCCTTTTTCHHHHHHHHHHHHTCCHHHHHHHHTSHHHHHHHHHGGGHHHHH--HHH
T ss_pred             CCchhHHHHHHHHHHHHHHHHHhcCCCCCCHHHHHHHHHhHHHHcCCCHHHHHHHHcChHHHHHHHHHHHHHHHc--CCC
Confidence            0   011123444444433211     1123356678    8999999999999999888777776665555444  489


Q ss_pred             eeeEEEECCeec----h-hhHhHHHHHHHH
Q 026069          185 YVPWVVVDGQPL----Y-EDYENFISYVCK  209 (244)
Q Consensus       185 ~vP~I~ING~~~----~-~a~~nL~~~IC~  209 (244)
                      .+||++|||+..    + ...+.|.++|=.
T Consensus       162 gtPt~~ing~~~~~~~g~~~~~~l~~~i~~  191 (195)
T 3c7m_A          162 GVPAYVVNGKYLIYTKSIKSIDAMADLIRE  191 (195)
T ss_dssp             CSSEEEETTTEEECGGGCCCHHHHHHHHHH
T ss_pred             ccCEEEECCEEEeccCCCCCHHHHHHHHHH
Confidence            999999999752    2 245666666543

>2in3_A Hypothetical protein; DSBA family, FRNE-like subfamily, disulfide isomerase, struc genomics, PSI-2, protein structure initiative; 1.85A {Nitrosomonas europaea}

Probab=98.25  E-value=6e-06  Score=68.89  Aligned_cols=164  Identities=15%  Similarity=0.143  Sum_probs=99.4

Q ss_pred             CceEEEEEEEeCChhhHHHHHHHHHHHHhhccC-CcceeEEEEeeecceecCCCC-------------------ceeecC
Q 026069           40 SKVKLGLYYESLCPYSANFIINYLVKIFEDVDL-LSIVDLHLSPWGNAKIRANNS-------------------TFDCQH   99 (244)
Q Consensus        40 ~kV~V~vYyESlCPds~~Fi~~qL~P~~~~~~l-~~~idl~lvP~G~a~~~~~~~-------------------~f~CQH   99 (244)
                      ++|+|++|+.-.||.|..+  .++.+.+..  + ...++|+++||+-......+.                   ++.-..
T Consensus         6 ~~~~I~~f~D~~CP~C~~~--~~~~~~l~~--~~~~~v~v~~~~~~l~~~~~~~~~~~~~~~~~~~~~r~a~~~g~~~~~   81 (216)
T 2in3_A            6 EKPVLWYIADPMCSWCWGF--APVIENIRQ--EYSAFLTVKIMPGGLRPGTNTPLLPEKRAQILHHWHSVHITTGQPFTF   81 (216)
T ss_dssp             CCCEEEEEECTTCHHHHHH--HHHHHHHHH--HHTTTCEEEEEECC----CCSBCCHHHHHHHHHHHHHHHHHHCCCCCC
T ss_pred             cceeEEEEECCCCchhhcc--hHHHHHHHh--cCCCCeEEEEeecccccCCCCCCCHHHHHHHHHHHHHHHHHHCCccCh
Confidence            3589999999999999944  455555554  2 235899999987432111000                   000000


Q ss_pred             C---hhhhccchhhhh-----hcccccccccccchhhhhhhhcc-----cCchhhHHHHHHhcCCChhhhhhcccCchhh
Q 026069          100 G---PSECLLNTVEAC-----AIDSWPELNKHFPFIYCIESLVY-----EHKYSQWETCFDKLELDPKPIVDCYTSGYGT  166 (244)
Q Consensus       100 G---~~EC~gN~lqaC-----ai~~~~~~~~~~~fI~C~~~~~~-----~~~~~~~~~Ca~~~gld~~~I~~C~~~~~G~  166 (244)
                      .   +..=..|...++     +...  .+.+.++|..-++....     ....+.+...+...|+|.+.+.+|.++.+..
T Consensus        82 ~~~~~~~~~~~s~~a~r~~~~a~~~--~~~~~~~~~~~lf~a~~~~~~~~~~~~~l~~~a~~~Gld~~~~~~~~~~~~~~  159 (216)
T 2in3_A           82 ENALPEGFIYDTEPACRGVVSVSLI--EPEKVFPFFAAIQRAFYVGQEDVAQLAILKKLAVDLGIPESRFTPVFQSDEAK  159 (216)
T ss_dssp             TTCSCTTCBCCCHHHHHHHHHHHHH--CGGGHHHHHHHHHHHHHTTCCCTTSHHHHHHHHHHTTCCHHHHHHHHHSHHHH
T ss_pred             HHHccCCcccCcHHHHHHHHHHHHh--CcchHHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHcCCCHHHHHHHhcchHHH
Confidence            0   000112333222     2111  12456777777765321     1233456788999999999999999998888


Q ss_pred             HHHHHHHHHhhcCCCCCceeeEEEE--CCee---c-h-hhHhHHHHHHHHhh
Q 026069          167 QLELKYAAETNSLVPPHQYVPWVVV--DGQP---L-Y-EDYENFISYVCKAY  211 (244)
Q Consensus       167 ~Ll~~~~~~T~~l~P~~~~vP~I~I--NG~~---~-~-~a~~nL~~~IC~~y  211 (244)
                      ..+.+..+....+  ++..+||++|  ||+.   . + ...+.|.+.|=...
T Consensus       160 ~~v~~~~~~a~~~--gv~g~Pt~~i~~~G~~~~~~~G~~~~~~l~~~l~~~~  209 (216)
T 2in3_A          160 QRTLAGFQRVAQW--GISGFPALVVESGTDRYLITTGYRPIEALRQLLDTWL  209 (216)
T ss_dssp             HHHHHHHHHHHHT--TCCSSSEEEEEETTEEEEEESSCCCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHc--CCcccceEEEEECCEEEEeccCCCCHHHHHHHHHHHH
Confidence            8887777776665  4999999998  9985   2 2 24566666665444

>3kzq_A Putative uncharacterized protein VP2116; protein with unknown function, STRU genomics, PSI, MCSG, protein structure initiative; HET: PG6; 2.10A {Vibrio parahaemolyticus}

Probab=98.18  E-value=1.6e-05  Score=66.60  Aligned_cols=165  Identities=10%  Similarity=0.032  Sum_probs=101.3

Q ss_pred             eEEEEEEEeCChhhHHHHHHHHHHHHhhccCCcceeEEEEeeecceecCCC-------------------CceeecCChh
Q 026069           42 VKLGLYYESLCPYSANFIINYLVKIFEDVDLLSIVDLHLSPWGNAKIRANN-------------------STFDCQHGPS  102 (244)
Q Consensus        42 V~V~vYyESlCPds~~Fi~~qL~P~~~~~~l~~~idl~lvP~G~a~~~~~~-------------------~~f~CQHG~~  102 (244)
                      ++|++|+.-.||.|-.+ ...|..+.+.  +.+.++|+++||+-......+                   .++.-...+.
T Consensus         3 ~~I~~~~D~~CP~cy~~-~~~l~~l~~~--~~~~v~v~~~p~~L~~~~~~~~~~~~~~~~~~~~~r~a~~~G~~f~~~~~   79 (208)
T 3kzq_A            3 IKLYYVHDPMCSWCWGY-KPTIEKLKQQ--LPGVIQFEYVVGGLAPDTNLPMPPEMQQKLEGIWKQIETQLGTKFNYDFW   79 (208)
T ss_dssp             EEEEEEECTTCHHHHHH-HHHHHHHHHH--SCTTSEEEEEECCSSCSCCCBCCHHHHHHHHHHHHHHHHHHCCCCCTTHH
T ss_pred             eEEEEEECCCCchhhhh-hHHHHHHHHh--CCCCceEEEEecccccCCCCCCCHHHHHHHHHHHHHHHHHHCCcccHHHH
Confidence            68999999999999977 5666666665  667899999998743211000                   0000001000


Q ss_pred             ---hhccchhhhhhcc-cccccccccchhhhhhhhc-----ccCchhhHHHHHHhcCCChhhhhhcccCchhhHHHHHHH
Q 026069          103 ---ECLLNTVEACAID-SWPELNKHFPFIYCIESLV-----YEHKYSQWETCFDKLELDPKPIVDCYTSGYGTQLELKYA  173 (244)
Q Consensus       103 ---EC~gN~lqaCai~-~~~~~~~~~~fI~C~~~~~-----~~~~~~~~~~Ca~~~gld~~~I~~C~~~~~G~~Ll~~~~  173 (244)
                         .=..|...++-+- ........++|..-+....     ...+.+.+...+.+.|+|.+.+.+|.++.+....+.+..
T Consensus        80 ~~~~~~~~s~~a~r~~~aa~~~g~~~~~~~~l~~a~~~~~~~~~~~~~l~~~a~~~Gld~~~~~~~~~s~~~~~~v~~~~  159 (208)
T 3kzq_A           80 KLCTPVRSTYQSCRAVIAAGFQDSYEQMLEAIQHAYYLRAMPPHEEATHLQLAKEIGLNVQQFKNDMDGTLLEGVFQDQL  159 (208)
T ss_dssp             HHSCCBCCCHHHHHHHHHHHTTTCHHHHHHHHHHHHHTSCCCTTCHHHHHHHHHHTTCCHHHHHHHHTSHHHHHHHHHHH
T ss_pred             hcCCCcCCcHHHHHHHHHHHHhCCHHHHHHHHHHHHHHcCCCCCCHHHHHHHHHHcCCCHHHHHHHHhChHHHHHHHHHH
Confidence               0001222222111 1111223466666665432     123344577899999999999999999998888888887


Q ss_pred             HHhhcCCCCCceeeEEEEC--Ceec----h-hhHhHHHHHHHHhh
Q 026069          174 AETNSLVPPHQYVPWVVVD--GQPL----Y-EDYENFISYVCKAY  211 (244)
Q Consensus       174 ~~T~~l~P~~~~vP~I~IN--G~~~----~-~a~~nL~~~IC~~y  211 (244)
                      +...++  ++..+||++||  |+..    + ...+.|.++|=...
T Consensus       160 ~~a~~~--gv~g~Pt~~v~~~~~~~~~~~g~~~~e~~~~~i~~~~  202 (208)
T 3kzq_A          160 SLAKSL--GVNSYPSLVLQINDAYFPIEVDYLSTEPTLKLIRERI  202 (208)
T ss_dssp             HHHHHT--TCCSSSEEEEEETTEEEEECCCSSCSHHHHHHHHHHH
T ss_pred             HHHHHc--CCCcccEEEEEECCEEEEeeCCCCCHHHHHHHHHHHH
Confidence            777765  48999999996  4432    1 34566666665544

>3fz5_A Possible 2-hydroxychromene-2-carboxylate isomeras; 2-hydroxychromene-2-carboxylate ISO structural genomics, PSI-2; HET: MSE GSH PGE; 2.40A {Rhodobacter sphaeroides 2}

Probab=97.93  E-value=3.6e-05  Score=64.48  Aligned_cols=161  Identities=12%  Similarity=0.152  Sum_probs=99.1

Q ss_pred             CCceEEEEEEEeCChhhHHHHHHHHHHHHhhccCCcceeEEEEee--ecceecCC-C----------------------C
Q 026069           39 NSKVKLGLYYESLCPYSANFIINYLVKIFEDVDLLSIVDLHLSPW--GNAKIRAN-N----------------------S   93 (244)
Q Consensus        39 ~~kV~V~vYyESlCPds~~Fi~~qL~P~~~~~~l~~~idl~lvP~--G~a~~~~~-~----------------------~   93 (244)
                      +.+++|++|+.-.||.|--. ...|..+...  .  -++|++.||  |......+ .                      .
T Consensus         2 ~~~~~I~~~~D~~cPwcyi~-~~~l~~~~~~--~--~~~v~~~p~~L~~~~~~~g~~~~~~~~~k~~~~~~~~~r~a~~~   76 (202)
T 3fz5_A            2 NAMNPIEFWFDFSSGYAFFA-AQRIEALAAE--L--GRTVLWRPYMLGAAFSVTGARGLSSTPLKRDYAQRDWARIARQR   76 (202)
T ss_dssp             -CCSCEEEEECTTCHHHHHH-HTTHHHHHHH--H--TCCEEEEECTTC----------CCSHHHHHHHHHHHHHHHHHHH
T ss_pred             CCCceeEEEEeCCCHHHHHH-HHHHHHHHHH--h--CCeEEEEeeeccchhhhcCCCCcccCcHHHHHHHHHHHHHHHHh
Confidence            35678999999999999766 4556666554  2  478899998  43221110 0                      0


Q ss_pred             ceeecCChhhhccchhhhhhcccc-c--ccccccchhhhhhhhcc-----cCchhhHHHHHHhcCCChhhhhhcccCchh
Q 026069           94 TFDCQHGPSECLLNTVEACAIDSW-P--ELNKHFPFIYCIESLVY-----EHKYSQWETCFDKLELDPKPIVDCYTSGYG  165 (244)
Q Consensus        94 ~f~CQHG~~EC~gN~lqaCai~~~-~--~~~~~~~fI~C~~~~~~-----~~~~~~~~~Ca~~~gld~~~I~~C~~~~~G  165 (244)
                      ++.-.. +..=..|...++-+-.. .  ...+.++++.-++....     ....+.+...+.+.|+|.+.+.++.++.+.
T Consensus        77 G~~f~~-~~~~~~~t~~a~r~~~~a~~~g~~~~~~~~~alf~a~~~~g~~i~~~~~L~~~a~~~Gld~~~~~~~~~s~~~  155 (202)
T 3fz5_A           77 GLTFRP-PADHPHVALAATRAFYWIEAQSPDAATAFAQRVFDLYFSDRLDTASPEAVSRLGPEVGLEPEALLAGIADPAL  155 (202)
T ss_dssp             TCCCCC-CTTCCCCCHHHHHHHHHHHHHCHHHHHHHHHHHHHHHTTTCCCTTCHHHHHTTHHHHTCCHHHHHHHTTCHHH
T ss_pred             CCCCCC-CCCCCCChHHHHHHHHHHHhhCchHHHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHcCCCHHHHHHHhcCHHH
Confidence            111111 11011244444321111 1  11245666666654322     123455778999999999999999999998


Q ss_pred             hHHHHHHHHHhhcCCCCCceeeEEEECCeec-h-hhHhHHHHHH
Q 026069          166 TQLELKYAAETNSLVPPHQYVPWVVVDGQPL-Y-EDYENFISYV  207 (244)
Q Consensus       166 ~~Ll~~~~~~T~~l~P~~~~vP~I~ING~~~-~-~a~~nL~~~I  207 (244)
                      ...+.+..++..++  ++..|||++|||+.. + +.++.|.+.+
T Consensus       156 ~~~v~~~~~~a~~~--Gv~GvPtfvv~g~~~~G~~~~~~l~~~l  197 (202)
T 3fz5_A          156 KETVRKIGEDAVAR--GIFGSPFFLVDDEPFWGWDRMEMMAEWI  197 (202)
T ss_dssp             HHHHHHHHHHHHHT--TCCSSSEEEETTEEEESGGGHHHHHHHH
T ss_pred             HHHHHHHHHHHHHC--CCCcCCEEEECCEEEecCCCHHHHHHHH
Confidence            88888888877765  499999999999875 2 4556666655

>3feu_A Putative lipoprotein; alpha-beta structure, structural genomics, PSI-2, protein ST initiative, midwest center for structural genomics, MCSG; HET: MSE; 1.76A {Vibrio fischeri} SCOP: c.47.1.0

Probab=97.90  E-value=1.6e-05  Score=65.96  Aligned_cols=146  Identities=10%  Similarity=0.007  Sum_probs=87.7

Q ss_pred             CceEEEEEEEeCChhhHHHHHHHHHHHHhhccCCcceeEEEEeeecceecCCCCceeecCChhhhccchhhhhhcccccc
Q 026069           40 SKVKLGLYYESLCPYSANFIINYLVKIFEDVDLLSIVDLHLSPWGNAKIRANNSTFDCQHGPSECLLNTVEACAIDSWPE  119 (244)
Q Consensus        40 ~kV~V~vYyESlCPds~~Fi~~qL~P~~~~~~l~~~idl~lvP~G~a~~~~~~~~f~CQHG~~EC~gN~lqaCai~~~~~  119 (244)
                      .++.|..|+.-.||+|.+|-  ..++-|.+ ++  .+.|+.+|..-.             +..+ ..-+....+-.... 
T Consensus        22 ~~~~vvef~d~~Cp~C~~~~--~~~~~~~~-~~--~v~~~~~p~~~~-------------~~~~-~aa~a~~Aa~~q~g-   81 (185)
T 3feu_A           22 GMAPVTEVFALSCGHCRNME--NFLPVISQ-EA--GTDIGKMHITFN-------------QSAH-IASMFYYAAEMQVD-   81 (185)
T ss_dssp             CCCSEEEEECTTCHHHHHHG--GGHHHHHH-HH--TSCCEEEECCSS-------------SHHH-HHHHHHHHHHTTSS-
T ss_pred             CCCEEEEEECCCChhHHHhh--HHHHHHHH-Hh--CCeEEEEeccCC-------------ccch-HHHHHHHHHHHHhC-
Confidence            68899999999999999993  34444433 23  356666665311             1100 01122222211111 


Q ss_pred             cccccchhhhhhhhccc-------CchhhHHHHHHhcCC-ChhhhhhcccCchhhHHHHHHHHHhhcCCCCCceeeEEEE
Q 026069          120 LNKHFPFIYCIESLVYE-------HKYSQWETCFDKLEL-DPKPIVDCYTSGYGTQLELKYAAETNSLVPPHQYVPWVVV  191 (244)
Q Consensus       120 ~~~~~~fI~C~~~~~~~-------~~~~~~~~Ca~~~gl-d~~~I~~C~~~~~G~~Ll~~~~~~T~~l~P~~~~vP~I~I  191 (244)
                      ...++++..-+......       ...+.+...+...|+ |.+.+.++.++ .....+.+..+...++.  ++.+|+++|
T Consensus        82 ~~~~~~~~~~lf~a~~~~~~~~~~~~~~~L~~~a~~~Gl~d~~~~~~~~~~-~~~~~v~~~~~~a~~~g--v~GtPtfvv  158 (185)
T 3feu_A           82 GAPDHAFMEDLFAATQMGEGTTLTEQQEAYSKAFTSRGLVSPYDFNEEQRD-TLIKKVDNAKMLSEKSG--ISSVPTFVV  158 (185)
T ss_dssp             SSCCHHHHHHHHHHHTCCTTSCHHHHHHHHHHHHHTTTCCCGGGCCHHHHH-HHHHHHHHHHHHHHHHT--CCSSSEEEE
T ss_pred             CchHHHHHHHHHHHHHHhccCCCCCCHHHHHHHHHHcCCCCHHHHHHHHHH-HHHHHHHHHHHHHHHcC--CCccCEEEE
Confidence            11245665555543211       123456788999998 99999999876 55566666666666554  899999999


Q ss_pred             CCeec----h-hhHhHHHHHHH
Q 026069          192 DGQPL----Y-EDYENFISYVC  208 (244)
Q Consensus       192 NG~~~----~-~a~~nL~~~IC  208 (244)
                      ||+..    + ...+.|.++|=
T Consensus       159 ng~~~v~~~Ga~~~e~~~~~i~  180 (185)
T 3feu_A          159 NGKYNVLIGGHDDPKQIADTIR  180 (185)
T ss_dssp             TTTEEECGGGCSSHHHHHHHHH
T ss_pred             CCEEEEecCCCCCHHHHHHHHH
Confidence            99863    2 24566766653

>3gl5_A Putative DSBA oxidoreductase SCO1869; probable DSBA oxidoreductase structural genomics, PSI-2, protein structure initiative; HET: MSE; 2.15A {Streptomyces coelicolor A3}

Probab=97.81  E-value=0.00019  Score=62.05  Aligned_cols=167  Identities=11%  Similarity=0.064  Sum_probs=106.9

Q ss_pred             ceEEEEEEEeCChhhHHHHHHHHHHHHhhccCC--cceeEEEEeeecceec--CCC------------------------
Q 026069           41 KVKLGLYYESLCPYSANFIINYLVKIFEDVDLL--SIVDLHLSPWGNAKIR--ANN------------------------   92 (244)
Q Consensus        41 kV~V~vYyESlCPds~~Fi~~qL~P~~~~~~l~--~~idl~lvP~G~a~~~--~~~------------------------   92 (244)
                      |++|++|+.-.||.|--. ...|..+...  +.  .-++|+++||.-....  .++                        
T Consensus         2 ~~~I~~~~D~~cPwcyig-~~~l~~a~~~--~~~~~~v~v~~~P~~L~p~~~~~g~~~~~~~~~~k~g~~~~~~~~~~~~   78 (239)
T 3gl5_A            2 HMRVEIWSDIACPWCYVG-KARFEKALAA--FPHRDGVEVVHRSFELDPGRAKDDVQPVLTMLTAKYGMSQEQAQAGEDN   78 (239)
T ss_dssp             CEEEEEEECSSCHHHHHH-HHHHHHHHHT--CTTGGGEEEEEEECCSCTTCCTTCCEEHHHHHHHHSCCCHHHHHHHHHH
T ss_pred             CeEEEEEEeCcCHhHHHH-HHHHHHHHHh--cCccCceEEEEEEeccccCCCCCCCCCHHHHHHHhhCCCHHHHHHHHHH
Confidence            689999999999999766 4667666664  43  4689999999421100  000                        


Q ss_pred             -------CceeecCChhhhccchhhhhhccc-ccccccccchhhhhhhhcc-----cCc-hhhHHHHHHhcCCChhhhhh
Q 026069           93 -------STFDCQHGPSECLLNTVEACAIDS-WPELNKHFPFIYCIESLVY-----EHK-YSQWETCFDKLELDPKPIVD  158 (244)
Q Consensus        93 -------~~f~CQHG~~EC~gN~lqaCai~~-~~~~~~~~~fI~C~~~~~~-----~~~-~~~~~~Ca~~~gld~~~I~~  158 (244)
                             .++.=...+ -=..|...++-+-. .....+.++|+.-++....     .+. .+.+...+...|+|.+.+.+
T Consensus        79 ~~r~a~~~Gl~f~~~~-~~~~nt~~a~r~~~~A~~~g~~~~~~~alf~a~~~~g~~i~d~~~~L~~~a~~~Gld~~~~~~  157 (239)
T 3gl5_A           79 LGAQAAAEGLAYRTRD-RDHGSTFDLHRLLHLAKERGRHEALLDAFYRGNFADERSVFNDDERLVELAVGAGLDAEEVRA  157 (239)
T ss_dssp             HHHHHHHTTCCCCCSS-CEECCCHHHHHHHHHHHTTTCHHHHHHHHHHHHHTCSSCCSSCHHHHHHHHHHTTCCHHHHHH
T ss_pred             HHHHHHHcCCCccCCC-CCCCChHHHHHHHHHHHhhCcHHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHcCCCHHHHHH
Confidence                   011111100 01234444432111 1122355666666654321     234 45678899999999999999


Q ss_pred             cccC-chhhHHHHHHHHHhhcCCCCCceeeEEEECCee-c-h-hhHhHHHHHHHHhhcC
Q 026069          159 CYTS-GYGTQLELKYAAETNSLVPPHQYVPWVVVDGQP-L-Y-EDYENFISYVCKAYKG  213 (244)
Q Consensus       159 C~~~-~~G~~Ll~~~~~~T~~l~P~~~~vP~I~ING~~-~-~-~a~~nL~~~IC~~y~g  213 (244)
                      |.++ .+....+.+..+...++  ++..|||++|||++ + + ...+.|.++|=.....
T Consensus       158 ~l~s~~~~~~~v~~~~~~a~~~--Gv~GvPtfvv~g~~~v~Ga~~~e~~~~~i~~~~~~  214 (239)
T 3gl5_A          158 VLADPAAYADEVRADEREAAQL--GATGVPFFVLDRAYGVSGAQPAEVFTQALTQAWGE  214 (239)
T ss_dssp             HHHCTTTTHHHHHHHHHHHHHT--TCCSSSEEEETTTEEEESSCCHHHHHHHHHHHHHT
T ss_pred             HHcCcHhHHHHHHHHHHHHHHC--CCCeeCeEEECCcEeecCCCCHHHHHHHHHHHHhh
Confidence            9999 88888888887776665  48999999999974 3 2 3567777777766653

>1r4w_A Glutathione S-transferase, mitochondrial; glutathione transferase, kappa GST, RGSTK1-1; HET: GSH; 2.50A {Rattus norvegicus} SCOP: c.47.1.13

Probab=97.77  E-value=9.8e-05  Score=62.67  Aligned_cols=167  Identities=13%  Similarity=0.037  Sum_probs=98.6

Q ss_pred             ceEEEEEEEeCChhhHHHHHHHHHHHHhhccCCcceeEEEEee--ecceecCCC-----------------------Cce
Q 026069           41 KVKLGLYYESLCPYSANFIINYLVKIFEDVDLLSIVDLHLSPW--GNAKIRANN-----------------------STF   95 (244)
Q Consensus        41 kV~V~vYyESlCPds~~Fi~~qL~P~~~~~~l~~~idl~lvP~--G~a~~~~~~-----------------------~~f   95 (244)
                      +++|++|+.-.||.|-.+ ...|..+...  .  -++|++.||  |......++                       .++
T Consensus         5 ~~~I~~~~D~~CP~Cy~~-~~~l~~l~~~--~--~~~v~~~p~~L~~~~~~~g~~~~~~~~~~~~~~~~~~~r~a~~~G~   79 (226)
T 1r4w_A            5 PRVLELFYDVLSPYSWLG-FEVLCRYQHL--W--NIKLKLRPALLAGIMKDSGNQPPAMVPHKGQYILKEIPLLKQLFQV   79 (226)
T ss_dssp             CEEEEEEECTTCHHHHHH-HHHHHHHTTT--S--SEEEEEEECCHHHHHHHTTCCCTTSSHHHHHHHHHHHHHHHHHHTC
T ss_pred             CceEEEEEeCCChHHHHH-HHHHHHHHHH--c--CCeEEEEeeecccchhccCCCCcccChHHHHHHHHHHHHHHHHhCC
Confidence            588999999999999877 4555555443  3  478888887  221100000                       001


Q ss_pred             eecCChh--hh--ccchhhhhhcccc---cccccccchhhhhhhhcc-----cCchhhHHHHHHhcCCCh---hhhhhcc
Q 026069           96 DCQHGPS--EC--LLNTVEACAIDSW---PELNKHFPFIYCIESLVY-----EHKYSQWETCFDKLELDP---KPIVDCY  160 (244)
Q Consensus        96 ~CQHG~~--EC--~gN~lqaCai~~~---~~~~~~~~fI~C~~~~~~-----~~~~~~~~~Ca~~~gld~---~~I~~C~  160 (244)
                      .-...+.  ..  ..|...+..+-..   .....+++|..=++....     .+..+.+...+...|+|.   +.+.+|.
T Consensus        80 ~~~~~~~~~~~~~~~~s~~a~r~~~aa~~~g~~~~~~~~~alf~a~~~~~~~i~~~~~L~~~a~~~Gl~~~d~~~~~~~~  159 (226)
T 1r4w_A           80 PMSVPKDFFGEHVKKGTVNAMRFLTAVSMEQPEMLEKVSRELWMRIWSRDEDITESQNILSAAEKAGMATAQAQHLLNKI  159 (226)
T ss_dssp             CCCCCSSTTTHHHHHCSHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHTSCCCCSSHHHHHHHHHHTTCCHHHHHHHHTTT
T ss_pred             CCCCCCccccccCCCCCHHHHHHHHHHHhhChHHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHcCCCchhHHHHHHHc
Confidence            1111000  00  0122222211111   012234666665554321     123345778899999964   4788888


Q ss_pred             cCchhhHHHHHHHHHhhcCCCCCceeeEEEEC----Ceec-h-hhHhHHHHHHHHhhcCC
Q 026069          161 TSGYGTQLELKYAAETNSLVPPHQYVPWVVVD----GQPL-Y-EDYENFISYVCKAYKGN  214 (244)
Q Consensus       161 ~~~~G~~Ll~~~~~~T~~l~P~~~~vP~I~IN----G~~~-~-~a~~nL~~~IC~~y~g~  214 (244)
                      ++.+....+.+..+...++  ++..|||++||    |+.. + +..+.|.+.+=..+.|+
T Consensus       160 ~s~~~~~~v~~~~~~a~~~--gv~G~Ptfvv~~~g~~~~~~G~~~~~~l~~~l~~~~~~~  217 (226)
T 1r4w_A          160 STELVKSKLRETTGAACKY--GAFGLPTTVAHVDGKTYMLFGSDRMELLAYLLGEKWMGP  217 (226)
T ss_dssp             TSHHHHHHHHHHHHHHHHT--TCCSSCEEEEEETTEEEEEESTTCHHHHHHHHTCCCCCS
T ss_pred             CCHHHHHHHHHHHHHHHHC--CCCCCCEEEEeCCCCcCceeCCCcHHHHHHHhcCcccCC
Confidence            8988888888777776665  59999999999    7654 2 45667777776666665

>3rpp_A Glutathione S-transferase kappa 1; glutathione transferase, kappa GST, TRX domain, GSH binding, detoxification, APO form; 1.80A {Homo sapiens} PDB: 3rpn_A 1yzx_A*

Probab=97.02  E-value=0.008  Score=51.44  Aligned_cols=168  Identities=13%  Similarity=0.037  Sum_probs=97.9

Q ss_pred             CceEEEEEEEeCChhhHHHHHHHHHHHHhhccCCcceeEEEEee--ecceecC-C-C---------------------Cc
Q 026069           40 SKVKLGLYYESLCPYSANFIINYLVKIFEDVDLLSIVDLHLSPW--GNAKIRA-N-N---------------------ST   94 (244)
Q Consensus        40 ~kV~V~vYyESlCPds~~Fi~~qL~P~~~~~~l~~~idl~lvP~--G~a~~~~-~-~---------------------~~   94 (244)
                      .+++|++|+.-.||.|--. ...|..+...  .  -++|++.||  |...... + +                     .+
T Consensus         4 ~~~~I~~~~D~~CPwcyi~-~~~L~~~~~~--~--~v~v~~~p~~L~~~~~~~g~~~~~~~~~k~~y~~~~~~r~a~~~G   78 (234)
T 3rpp_A            4 LPRTVELFYDVLSPYSWLG-FEILCRYQNI--W--NINLQLRPSLITGIMKDSGNKPPGLLPRKGLYMANDLKLLRHHLQ   78 (234)
T ss_dssp             CCEEEEEEECTTCHHHHHH-HHHHHHHTTT--S--SEEEEEEECCHHHHCC----CCCSSSCHHHHHHHHHHHHHHHHHT
T ss_pred             CCceEEEEEeCCCHHHHHH-HHHHHHHHHH--c--CCeEEEEEeecchhhhhcCCCCcccChHHHHHHHHHHHHHHHHhC
Confidence            5789999999999999766 3455554443  2  488999998  4221100 0 0                     01


Q ss_pred             eeecCCh--hh--hccchhhhhhcccc---cccccccchhhhhhhhc-----ccCchhhHHHHHHhcCCCh---hhhhhc
Q 026069           95 FDCQHGP--SE--CLLNTVEACAIDSW---PELNKHFPFIYCIESLV-----YEHKYSQWETCFDKLELDP---KPIVDC  159 (244)
Q Consensus        95 f~CQHG~--~E--C~gN~lqaCai~~~---~~~~~~~~fI~C~~~~~-----~~~~~~~~~~Ca~~~gld~---~~I~~C  159 (244)
                      +.-...+  ..  -..|.+.++-+-..   ....+..+++.-++...     +.+..+.+...+.+.|+|.   +.+.+-
T Consensus        79 ~~f~~~~~~~~~~~~~nt~~a~r~~~aa~~~~~~~~~~~~~al~~A~~~~g~di~d~~~L~~~a~~~GLd~~~~~~~l~~  158 (234)
T 3rpp_A           79 IPIHFPKDFLSVMLEKGSLSAMRFLTAVNLEHPEMLEKASRELWMRVWSRNEDITEPQSILAAAEKAGMSAEQAQGLLEK  158 (234)
T ss_dssp             CCCCCCSSCHHHHHHHCSHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHTSCCCCSSHHHHHHHHHHTTCCHHHHHHHHTT
T ss_pred             CCCCCCCCCcccccCCCCHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHcCCCHHHHHHHHHH
Confidence            1111100  00  00133333321111   01234455655554322     1234456789999999999   455555


Q ss_pred             ccCchhhHHHHHHHHHhhcCCCCCceeeEEEEC--Ce-e-c-h-hhHhHHHHHHHHhhcCC
Q 026069          160 YTSGYGTQLELKYAAETNSLVPPHQYVPWVVVD--GQ-P-L-Y-EDYENFISYVCKAYKGN  214 (244)
Q Consensus       160 ~~~~~G~~Ll~~~~~~T~~l~P~~~~vP~I~IN--G~-~-~-~-~a~~nL~~~IC~~y~g~  214 (244)
                      +++.+.+..+.+..++..++  ++..|||++||  |+ . . + +.+..|...+=..+.|+
T Consensus       159 ~~s~~~~~~l~~~~~~a~~~--Gv~GvPtfvv~~~g~~~~f~G~drl~~l~~~L~~~~~~p  217 (234)
T 3rpp_A          159 IATPKVKNQLKETTEAACRY--GAFGLPITVAHVDGQTHMLFGSDRMELLAHLLGEKWMGP  217 (234)
T ss_dssp             TTSHHHHHHHHHHHHHHHHT--TCSSSCEEEEEETTEEEEEESSSCHHHHHHHHTCCCCCS
T ss_pred             ccCHHHHHHHHHHHHHHHHc--CCCCCCEEEEeCCCCcCceeCccCHHHHHHHhccccCCC
Confidence            68888888888888877765  59999999995  74 2 2 2 45666777675566665

>3gv1_A Disulfide interchange protein; neisseria gonorrhoeae (strain 700825 / FA 1090), DSBC, structural genomics, unknown funct 2; 2.00A {Neisseria gonorrhoeae}

Probab=96.37  E-value=0.0085  Score=48.03  Aligned_cols=40  Identities=20%  Similarity=0.322  Sum_probs=28.6

Q ss_pred             CCCCceEEEEEEEeCChhhHHHHHHHHHHHHhhccCCcceeEEEEeee
Q 026069           37 DVNSKVKLGLYYESLCPYSANFIINYLVKIFEDVDLLSIVDLHLSPWG   84 (244)
Q Consensus        37 ~~~~kV~V~vYyESlCPds~~Fi~~qL~P~~~~~~l~~~idl~lvP~G   84 (244)
                      ..+.++.|.+|..-.||+|++|.     |.+..  +. .+.|.++.|.
T Consensus        11 ~~~a~~~vv~f~D~~Cp~C~~~~-----~~l~~--l~-~v~v~~~~~P   50 (147)
T 3gv1_A           11 RGNGKLKVAVFSDPDCPFCKRLE-----HEFEK--MT-DVTVYSFMMP   50 (147)
T ss_dssp             ETTCCEEEEEEECTTCHHHHHHH-----HHHTT--CC-SEEEEEEECC
T ss_pred             cCCCCEEEEEEECCCChhHHHHH-----HHHhh--cC-ceEEEEEEcc
Confidence            35678999999999999999984     33443  53 3666655554

>1un2_A DSBA, thiol-disulfide interchange protein; disulfide oxidoreductase, oxidoreductase, protein disulfide isomerase, protein folding, thioredoxin; 2.4A {Escherichia coli} SCOP: c.47.1.13

Probab=95.87  E-value=0.0091  Score=49.94  Aligned_cols=57  Identities=14%  Similarity=0.087  Sum_probs=47.8

Q ss_pred             chhhHHHHHHhcCCChhhhhhcccCchhhHHHHHHHHHhhcCCCCCceeeEEEECCeec
Q 026069          138 KYSQWETCFDKLELDPKPIVDCYTSGYGTQLELKYAAETNSLVPPHQYVPWVVVDGQPL  196 (244)
Q Consensus       138 ~~~~~~~Ca~~~gld~~~I~~C~~~~~G~~Ll~~~~~~T~~l~P~~~~vP~I~ING~~~  196 (244)
                      +.+.+...+...|+|.+.+.+|.++......+.+.......+  +++.||+++|||++.
T Consensus         5 d~~~L~~~a~~~Gld~~~~~~~l~s~~~~~~v~~~~~~a~~~--gi~gvP~fvingk~~   61 (197)
T 1un2_A            5 SASDIRDVFINAGIKGEEYDAAWNSFVVKSLVAQQEKAAADV--QLRGVPAMFVNGKYQ   61 (197)
T ss_dssp             SHHHHHHHHHHHTCCHHHHHHHHTSHHHHHHHHHHHHHHHHT--TCCSSSEEEETTTEE
T ss_pred             CHHHHHHHHHHcCCCHHHHHHHHhCHHHHHHHHHHHHHHHHc--CCCcCCEEEEcceEe
Confidence            345677889999999999999999998888888877776665  488999999999864

>1t3b_A Thiol:disulfide interchange protein DSBC; oxidoreductase, protein disulfide isomerase, protein folding, redox protein; 2.50A {Haemophilus influenzae} SCOP: c.47.1.9 d.17.3.1

Probab=95.80  E-value=0.025  Score=47.39  Aligned_cols=43  Identities=16%  Similarity=0.324  Sum_probs=31.5

Q ss_pred             CCCCCceEEEEEEEeCChhhHHHHHHHHHHHHhhccCCcceeEEEEeee
Q 026069           36 SDVNSKVKLGLYYESLCPYSANFIINYLVKIFEDVDLLSIVDLHLSPWG   84 (244)
Q Consensus        36 ~~~~~kV~V~vYyESlCPds~~Fi~~qL~P~~~~~~l~~~idl~lvP~G   84 (244)
                      +..+.++.|.+|+...||+|++|. ..|.+ +.+  .  -+.|+++.|.
T Consensus        82 g~~~~k~~vv~F~d~~Cp~C~~~~-~~l~~-~~~--~--~v~v~~~~~p  124 (211)
T 1t3b_A           82 PAKNEKHVVTVFMDITCHYCHLLH-QQLKE-YND--L--GITVRYLAFP  124 (211)
T ss_dssp             CCTTCSEEEEEEECTTCHHHHHHH-TTHHH-HHH--T--TEEEEEEECC
T ss_pred             cCCCCCEEEEEEECCCCHhHHHHH-HHHHH-HHh--C--CcEEEEEECC
Confidence            445789999999999999999994 55666 333  1  2677766554

>1v58_A Thiol:disulfide interchange protein DSBG; reduced DSBG, redox protein, protein disulfide isomerase, thioredoxin fold; 1.70A {Escherichia coli} SCOP: c.47.1.9 d.17.3.1 PDB: 1v57_A 2h0i_A 2h0h_A 2h0g_A 2iy2_A

Probab=93.69  E-value=0.11  Score=44.41  Aligned_cols=45  Identities=18%  Similarity=0.333  Sum_probs=36.3

Q ss_pred             CCCCCCceEEEEEEEeCChhhHHHHHHHHHHHHhhccCCcceeEEEEeee
Q 026069           35 PSDVNSKVKLGLYYESLCPYSANFIINYLVKIFEDVDLLSIVDLHLSPWG   84 (244)
Q Consensus        35 ~~~~~~kV~V~vYyESlCPds~~Fi~~qL~P~~~~~~l~~~idl~lvP~G   84 (244)
                      .+..+.|+.|.+|..-.||+|++| ..+|.+.++.    ..|.|.++||+
T Consensus        92 ~G~~~ak~~v~~F~D~~Cp~C~~~-~~~l~~~~~~----g~v~v~~~~~p  136 (241)
T 1v58_A           92 DGKKDAPVIVYVFADPFCPYCKQF-WQQARPWVDS----GKVQLRTLLVG  136 (241)
T ss_dssp             ESCTTCSEEEEEEECTTCHHHHHH-HHHHHHHHHT----TSEEEEEEECC
T ss_pred             ECCCCCCeEEEEEECCCChhHHHH-HHHHHHHHhC----CcEEEEEEECC
Confidence            455678999999999999999999 4677776664    45788888885

>3tdg_A DSBG, putative uncharacterized protein; thioredoxin fold, reductase, oxidoreductase; HET: P6G; 2.10A {Helicobacter pylori}

Probab=88.91  E-value=0.41  Score=42.41  Aligned_cols=41  Identities=15%  Similarity=0.230  Sum_probs=34.3

Q ss_pred             CCCceEEEEEEEeCChhhHHHHHHHHHHHHhhccCCcceeEEEEeeec
Q 026069           38 VNSKVKLGLYYESLCPYSANFIINYLVKIFEDVDLLSIVDLHLSPWGN   85 (244)
Q Consensus        38 ~~~kV~V~vYyESlCPds~~Fi~~qL~P~~~~~~l~~~idl~lvP~G~   85 (244)
                      .+.+..|.+|..-.||+|+++ ..+|.|.+++      +++++++|+-
T Consensus       145 ~~gk~~I~vFtDp~CPYCkkl-~~~l~~~l~~------~~Vr~i~~Pi  185 (273)
T 3tdg_A          145 ANKDKILYIVSDPMCPHCQKE-LTKLRDHLKE------NTVRMVVVGW  185 (273)
T ss_dssp             GGTTCEEEEEECTTCHHHHHH-HHTHHHHHHH------CEEEEEECCC
T ss_pred             CCCCeEEEEEECcCChhHHHH-HHHHHHHhhC------CcEEEEEeec
Confidence            467889999999999999999 5788887764      7888888764

>1eej_A Thiol:disulfide interchange protein; oxidoreductase, protein disulfide isomerase, protein folding, redox protein, redox-active center; HET: MES; 1.90A {Escherichia coli} SCOP: c.47.1.9 d.17.3.1 PDB: 1tjd_A 1jzd_A 1jzo_A 1g0t_A 2iyj_A

Probab=81.76  E-value=2  Score=35.49  Aligned_cols=44  Identities=7%  Similarity=0.132  Sum_probs=31.3

Q ss_pred             CCCCCCceEEEEEEEeCChhhHHHHHHHHHHHHhhccCCcceeEEEEeee
Q 026069           35 PSDVNSKVKLGLYYESLCPYSANFIINYLVKIFEDVDLLSIVDLHLSPWG   84 (244)
Q Consensus        35 ~~~~~~kV~V~vYyESlCPds~~Fi~~qL~P~~~~~~l~~~idl~lvP~G   84 (244)
                      .+..+.++.|.+|+...||+|+++. ..|....+     .-+.|.++.|.
T Consensus        81 ~g~~~~k~~vv~F~d~~Cp~C~~~~-~~l~~l~~-----~~v~v~~~~~p  124 (216)
T 1eej_A           81 YKAPQEKHVITVFTDITCGYCHKLH-EQMADYNA-----LGITVRYLAFP  124 (216)
T ss_dssp             ECCTTCCEEEEEEECTTCHHHHHHH-TTHHHHHH-----TTEEEEEEECC
T ss_pred             ecCCCCCEEEEEEECCCCHHHHHHH-HHHHHHHh-----CCcEEEEEECC
Confidence            4556789999999999999999994 45554433     13666666553

>1fo5_A Thioredoxin; disulfide oxidoreductase, structural genomics, BSGC structure funded by NIH, protein structure initiative, PSI; NMR {Methanocaldococcus jannaschii} SCOP: c.47.1.1

Probab=80.40  E-value=1.7  Score=29.27  Aligned_cols=36  Identities=19%  Similarity=0.447  Sum_probs=24.6

Q ss_pred             ceEEEEEEEeCChhhHHHHHHHHHHHHhhccCCcceeEE
Q 026069           41 KVKLGLYYESLCPYSANFIINYLVKIFEDVDLLSIVDLH   79 (244)
Q Consensus        41 kV~V~vYyESlCPds~~Fi~~qL~P~~~~~~l~~~idl~   79 (244)
                      .+.|.+|+-+-||+|+++. ..|..+.+.  +.+.+.+.
T Consensus         3 ~~~vv~f~~~~C~~C~~~~-~~l~~~~~~--~~~~~~~~   38 (85)
T 1fo5_A            3 KVKIELFTSPMCPHCPAAK-RVVEEVANE--MPDAVEVE   38 (85)
T ss_dssp             CEEEEEEECCCSSCCCTHH-HHHHHHHHH--CSSSEEEE
T ss_pred             ceEEEEEeCCCCCchHHHH-HHHHHHHHH--cCCceEEE
Confidence            5789999999999999984 445444443  44434433

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	244
d1beda_	181	Disulfide-bond formation facilitator (DsbA) {Vibri	98.96
d1z6ma1	172	Hypothetical protein EF0770 {Enterococcus faecalis	98.63
d1fvka_	188	Disulfide-bond formation facilitator (DsbA) {Esche	98.56
d1v58a1	169	Thiol:disulfide interchange protein DsbG, C-termin	97.62
d1t3ba1	150	Disulfide bond isomerase, DsbC, C-terminal domain	97.43
d1eeja1	156	Disulfide bond isomerase, DsbC, C-terminal domain	96.54
d1un2a_	195	Disulfide-bond formation facilitator (DsbA) {Esche	96.36
d1r4wa_	221	Mitochondrial class kappa glutathione S-transferas	93.62
d1wjka_	100	Thioredoxin-like structure containing protein C330	81.8
d1z6na1	166	Hypothetical protein PA1234 {Pseudomonas aeruginos	80.03

>d1beda_ c.47.1.13 (A:) Disulfide-bond formation facilitator (DsbA) {Vibrio cholerae [TaxId: 666]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: DsbA-like
domain: Disulfide-bond formation facilitator (DsbA)
species: Vibrio cholerae [TaxId: 666]

Probab=98.96  E-value=9e-10  Score=87.44  Aligned_cols=155  Identities=13%  Similarity=0.128  Sum_probs=97.6

Q ss_pred             CCCCCCceEEEEEEEeCChhhHHHHHHHHHHHHhhccCCcceeEEEEeee--cceecCCCCceeecCChhhhccchhhhh
Q 026069           35 PSDVNSKVKLGLYYESLCPYSANFIINYLVKIFEDVDLLSIVDLHLSPWG--NAKIRANNSTFDCQHGPSECLLNTVEAC  112 (244)
Q Consensus        35 ~~~~~~kV~V~vYyESlCPds~~Fi~~qL~P~~~~~~l~~~idl~lvP~G--~a~~~~~~~~f~CQHG~~EC~gN~lqaC  112 (244)
                      ..+.+.+++|.+|..-.||+|++| ...+.+.+.+  +.+.+.+.++|+-  .......              ..+..+|
T Consensus        13 ~~p~~~~~~Ivef~d~~Cp~C~~~-~~~~~~l~~~--~~~~~~~~~~~~~~~~~~~~~~--------------~~~~~~~   75 (181)
T d1beda_          13 KTPASSSPVVSEFFSFYCPHCNTF-EPIIAQLKQQ--LPEGAKFQKNHVSFMGGNMGQA--------------MSKAYAT   75 (181)
T ss_dssp             SSCCCSSCEEEEEECTTCHHHHHH-HHHHHHHHHT--SCTTCEEEEEECSSSSGGGHHH--------------HHHHHHH
T ss_pred             CCCCCCCCEEEEEECCCCccchhh-hhhhhhHhhh--cccccceeEEeccccccccHHH--------------HHHHHHH
Confidence            345577889999999999999999 5778777776  6666666665543  2211110              2223333


Q ss_pred             hcccccccccccchhhhhhhhcc-cCchhhHHHHHHhcCCChhhhhhcccCchhhHHHHHHHHHhhcCCCCCceeeEEEE
Q 026069          113 AIDSWPELNKHFPFIYCIESLVY-EHKYSQWETCFDKLELDPKPIVDCYTSGYGTQLELKYAAETNSLVPPHQYVPWVVV  191 (244)
Q Consensus       113 ai~~~~~~~~~~~fI~C~~~~~~-~~~~~~~~~Ca~~~gld~~~I~~C~~~~~G~~Ll~~~~~~T~~l~P~~~~vP~I~I  191 (244)
                      +...-.....+..+..=+..... ......+..-+...|+|.+.+.+|.++.+.+..+.+..+....+.  ++.+|+|+|
T Consensus        76 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~gvd~~~~~~~~~~~~~~~~v~~~~~~~~~~g--i~gTPt~~I  153 (181)
T d1beda_          76 MIALEVEDKMVPVMFNRIHTLRKPPKDEQELRQIFLDEGIDAAKFDAAYNGFAVDSMVRRFDKQFQDSG--LTGVPAVVV  153 (181)
T ss_dssp             HHHTTCHHHHHHHHHHHHTTSCCCCCSHHHHHHHHHTTTCCHHHHHHHHTSHHHHHHHHHHHHHHHHHT--CCSSSEEEE
T ss_pred             HHHhcchhhHHHHHHHHHHHhccccchHHHHHHHHHHhcCCHHHHHHHHhChHHHHHHHHHHHHHHHhC--CccccEEEE
Confidence            22211111111111111111111 123345677888999999999999999999999988888887665  899999999


Q ss_pred             CCeech-----hhHhHHHHHHH
Q 026069          192 DGQPLY-----EDYENFISYVC  208 (244)
Q Consensus       192 NG~~~~-----~a~~nL~~~IC  208 (244)
                      ||+...     ...+.|..+|=
T Consensus       154 nGk~~v~~~~~~~~~~l~~~i~  175 (181)
T d1beda_         154 NNRYLVQGQSVKSLDEYFDLVN  175 (181)
T ss_dssp             TTTEEECGGGCCSHHHHHHHHH
T ss_pred             CCEEeeCCCCCCCHHHHHHHHH
Confidence            998542     24556665553

>d1z6ma1 c.47.1.13 (A:1-172) Hypothetical protein EF0770 {Enterococcus faecalis [TaxId: 1351]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: DsbA-like
domain: Hypothetical protein EF0770
species: Enterococcus faecalis [TaxId: 1351]

Probab=98.63  E-value=4.5e-08  Score=77.08  Aligned_cols=148  Identities=15%  Similarity=0.117  Sum_probs=86.6

Q ss_pred             CCCCCCceEEEEEEEeCChhhHHHHHHHHHHHHhhccCCc--ceeEEEEeeecceecCCCCceeecCChhhhccchhhhh
Q 026069           35 PSDVNSKVKLGLYYESLCPYSANFIINYLVKIFEDVDLLS--IVDLHLSPWGNAKIRANNSTFDCQHGPSECLLNTVEAC  112 (244)
Q Consensus        35 ~~~~~~kV~V~vYyESlCPds~~Fi~~qL~P~~~~~~l~~--~idl~lvP~G~a~~~~~~~~f~CQHG~~EC~gN~lqaC  112 (244)
                      .+..+.+|+|.+|..-.||+|++| ...+.++..+  ..+  .+.+.++|+..-....              ..-...+|
T Consensus        19 ~G~~~a~v~I~ef~d~~Cp~C~~~-~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~--------------~~a~~~~~   81 (172)
T d1z6ma1          19 IGESNAPVKMIEFINVRCPYCRKW-FEESEELLAQ--SVKSGKVERIIKLFDKEKESL--------------QRGNVMHH   81 (172)
T ss_dssp             ESCTTCSEEEEEEECTTCHHHHHH-HHHHHHHHHH--HHHTTSEEEEEEECCCCSTTT--------------HHHHHHHT
T ss_pred             ecCCCCCEEEEEEECCCCHhHHHH-HHHHhhhhhh--hccccceeeeeccccccchhh--------------HHHHHHHH
Confidence            678889999999999999999999 5667777665  433  3445555554322111              12233344


Q ss_pred             hcccccccccccchhhhhhhhcccCchhhHHHHHHhcCCChhhhhhcccCchhhHHHHHHHHHhhcCCCCCceeeEEEEC
Q 026069          113 AIDSWPELNKHFPFIYCIESLVYEHKYSQWETCFDKLELDPKPIVDCYTSGYGTQLELKYAAETNSLVPPHQYVPWVVVD  192 (244)
Q Consensus       113 ai~~~~~~~~~~~fI~C~~~~~~~~~~~~~~~Ca~~~gld~~~I~~C~~~~~G~~Ll~~~~~~T~~l~P~~~~vP~I~IN  192 (244)
                      +.... ....++.|+.=+..............=++.     .....|.+++.-..++.+..+....+  +++.+||++||
T Consensus        82 ~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~i~~~~~~a~~~--gI~gTPt~~In  153 (172)
T d1z6ma1          82 YIDYS-APEQALSALHKMFATQDEWGNLTLEEVATY-----AEKNLGLKEQKDATLVSAVIAEANAA--HIQFVPTIIIG  153 (172)
T ss_dssp             TCCTT-CHHHHHHHHHHHHHTHHHHTTSCHHHHHHH-----HHHTSCCCCCCCHHHHHHHHHHHHHH--TCCSSCEEEET
T ss_pred             HHHHc-cchhHHHHHHHHHHhccccchHHHHHHHHH-----HHhhhhhhhHHHHHHHHHHHHHHHHc--CCCcCCEEEEC
Confidence            43332 334455555444332211000011111222     23445777777777777777776655  49999999999


Q ss_pred             Ceech--hhHhHHHHHH
Q 026069          193 GQPLY--EDYENFISYV  207 (244)
Q Consensus       193 G~~~~--~a~~nL~~~I  207 (244)
                      |+.+.  ...+.|.++|
T Consensus       154 g~~~~g~~~~~~~~~~i  170 (172)
T d1z6ma1         154 EYIFDESVTEEELRGYI  170 (172)
T ss_dssp             TEEECTTCCHHHHHHHH
T ss_pred             CEEecCCCCHHHHHHHH
Confidence            99763  2456666654

>d1fvka_ c.47.1.13 (A:) Disulfide-bond formation facilitator (DsbA) {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: DsbA-like
domain: Disulfide-bond formation facilitator (DsbA)
species: Escherichia coli [TaxId: 562]

Probab=98.56  E-value=3.2e-08  Score=79.11  Aligned_cols=144  Identities=15%  Similarity=0.050  Sum_probs=87.0

Q ss_pred             CCCCceEEEEEEEeCChhhHHHHHHHHHHHHhh-ccCCcceeEEEEeeecceecCCCCceeecCChhhhccchhhhhhcc
Q 026069           37 DVNSKVKLGLYYESLCPYSANFIINYLVKIFED-VDLLSIVDLHLSPWGNAKIRANNSTFDCQHGPSECLLNTVEACAID  115 (244)
Q Consensus        37 ~~~~kV~V~vYyESlCPds~~Fi~~qL~P~~~~-~~l~~~idl~lvP~G~a~~~~~~~~f~CQHG~~EC~gN~lqaCai~  115 (244)
                      +...+++|..|..-.||+|++| ...|.+..+. +...+.+.|..+|+........   ..         .-..-+|+..
T Consensus        15 p~~~~~~VvEffdy~Cp~C~~~-~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~---------~a~~~~~~~~   81 (188)
T d1fvka_          15 PVAGAPQVLEFFSFFCPHCYQF-EEVLHISDNVKKKLPEGVKMTKYHVNFMGGDLG---KD---------LTQAWAVAMA   81 (188)
T ss_dssp             CCTTCCSEEEEECTTCHHHHHH-HHTTCHHHHHHTTSCTTCCEEEEECSSSSHHHH---HH---------HHHHHHHHHH
T ss_pred             CCCCCCEEEEEECCCChhhHHH-HHHHHHHHHHhhccCCceEEEEEecCcCCChhH---HH---------HHHHHHHHHH
Confidence            4456678889999999999999 5666554432 2456778888887753321100   00         0111112111


Q ss_pred             cccccccccchhhhhhhhcccCchhhHHHHHHhcCCChhhhhhcccCchhhHHHHHHHHHhhcCCCCCceeeEEEECCee
Q 026069          116 SWPELNKHFPFIYCIESLVYEHKYSQWETCFDKLELDPKPIVDCYTSGYGTQLELKYAAETNSLVPPHQYVPWVVVDGQP  195 (244)
Q Consensus       116 ~~~~~~~~~~fI~C~~~~~~~~~~~~~~~Ca~~~gld~~~I~~C~~~~~G~~Ll~~~~~~T~~l~P~~~~vP~I~ING~~  195 (244)
                      .......+..+..=+.........+.+..=+...|+|.+.+.+|.++++=.+++.++.+....++  ++.+|||+|||+.
T Consensus        82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~d~~~~~~~~~~~~~~~~v~~~~~~a~~~g--I~gTPt~vInGky  159 (188)
T d1fvka_          82 LGVEDKVTVPLFEGVQKTQTIRSASDIRDVFINAGIKGEEYDAAWNSFVVKSLVAQQEKAAADVQ--LRGVPAMFVNGKY  159 (188)
T ss_dssp             HTCHHHHHHHHHHHHHTSCCCCSHHHHHHHHHHTTCCHHHHHHHHHCHHHHHHHHHHHHHHHHTT--CCSSSEEEETTTE
T ss_pred             HhhhhhHHHHHHHHhhhhcccchHHHHHHHHHHccCCHHHHHhhhccHHHHHHHHHHHHHHHHcC--CccccEEEECCEE
Confidence            11111111111111111111122334566678889999999999999988888888888877654  9999999999974

>d1v58a1 c.47.1.9 (A:62-230) Thiol:disulfide interchange protein DsbG, C-terminal domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: DsbC/DsbG C-terminal domain-like
domain: Thiol:disulfide interchange protein DsbG, C-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=97.62  E-value=8.5e-05  Score=58.87  Aligned_cols=46  Identities=17%  Similarity=0.310  Sum_probs=39.1

Q ss_pred             CCCCCCceEEEEEEEeCChhhHHHHHHHHHHHHhhccCCcceeEEEEeeec
Q 026069           35 PSDVNSKVKLGLYYESLCPYSANFIINYLVKIFEDVDLLSIVDLHLSPWGN   85 (244)
Q Consensus        35 ~~~~~~kV~V~vYyESlCPds~~Fi~~qL~P~~~~~~l~~~idl~lvP~G~   85 (244)
                      .+..+.+++|.+|..-.||+|++|. .+|.+.++.    ..+.+.++||+-
T Consensus        31 ~G~~~a~~tv~vF~D~~CP~C~~~~-~~l~~l~~~----~~v~v~~~~~~~   76 (169)
T d1v58a1          31 DGKKDAPVIVYVFADPFCPYCKQFW-QQARPWVDS----GKVQLRTLLVGV   76 (169)
T ss_dssp             ESCTTCSEEEEEEECTTCHHHHHHH-HHHHHHHHT----TSEEEEEEECCC
T ss_pred             eCCCCCCEEEEEEECCCCcchHHHH-HHHHHHHhc----cceeEEEEeccc
Confidence            5678899999999999999999995 678887775    458899999875

>d1t3ba1 c.47.1.9 (A:61-210) Disulfide bond isomerase, DsbC, C-terminal domain {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: DsbC/DsbG C-terminal domain-like
domain: Disulfide bond isomerase, DsbC, C-terminal domain
species: Haemophilus influenzae [TaxId: 727]

Probab=97.43  E-value=0.00011  Score=57.09  Aligned_cols=46  Identities=13%  Similarity=0.171  Sum_probs=36.5

Q ss_pred             CCCCCCceEEEEEEEeCChhhHHHHHHHHHHHHhhccCCcceeEEEEeeecc
Q 026069           35 PSDVNSKVKLGLYYESLCPYSANFIINYLVKIFEDVDLLSIVDLHLSPWGNA   86 (244)
Q Consensus        35 ~~~~~~kV~V~vYyESlCPds~~Fi~~qL~P~~~~~~l~~~idl~lvP~G~a   86 (244)
                      .+..+.|+.|.+|..-.||+|++| ..++.+..+     ..+++++++|...
T Consensus        21 ~g~~~ak~~I~~FsD~~CPyC~~~-~~~l~~l~~-----~~~~v~~~~~~~~   66 (150)
T d1t3ba1          21 YPAKNEKHVVTVFMDITCHYCHLL-HQQLKEYND-----LGITVRYLAFPRA   66 (150)
T ss_dssp             ECCTTCSEEEEEEECTTCHHHHHH-HTTHHHHHH-----TTEEEEEEECCSS
T ss_pred             ECCCCCCEEEEEEECCCCHHHHHH-hHHHHHHhc-----cCceEEEEEeccc
Confidence            467789999999999999999999 577777765     3467777777543

>d1eeja1 c.47.1.9 (A:61-216) Disulfide bond isomerase, DsbC, C-terminal domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: DsbC/DsbG C-terminal domain-like
domain: Disulfide bond isomerase, DsbC, C-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=96.54  E-value=0.0016  Score=50.47  Aligned_cols=44  Identities=7%  Similarity=0.132  Sum_probs=32.7

Q ss_pred             CCCCCCceEEEEEEEeCChhhHHHHHHHHHHHHhhccCCcceeEEEEeee
Q 026069           35 PSDVNSKVKLGLYYESLCPYSANFIINYLVKIFEDVDLLSIVDLHLSPWG   84 (244)
Q Consensus        35 ~~~~~~kV~V~vYyESlCPds~~Fi~~qL~P~~~~~~l~~~idl~lvP~G   84 (244)
                      .+..+.|+.|.+|..-.||+|++| ...|.+..+     +.+++.++.|-
T Consensus        21 ~g~~~ak~tIv~FsD~~CpyC~~~-~~~l~~~~~-----~~~~~~~~~~p   64 (156)
T d1eeja1          21 YKAPQEKHVITVFTDITCGYCHKL-HEQMADYNA-----LGITVRYLAFP   64 (156)
T ss_dssp             ECCTTCCEEEEEEECTTCHHHHHH-HTTHHHHHH-----TTEEEEEEECC
T ss_pred             ecCCCCCEEEEEEeCCCCHHHHHH-HHHHHHhhc-----cCceEEEEecc
Confidence            567789999999999999999998 455655543     34566665553

>d1un2a_ c.47.1.13 (A:) Disulfide-bond formation facilitator (DsbA) {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: DsbA-like
domain: Disulfide-bond formation facilitator (DsbA)
species: Escherichia coli [TaxId: 562]

Probab=96.36  E-value=0.0017  Score=52.61  Aligned_cols=70  Identities=13%  Similarity=0.060  Sum_probs=55.7

Q ss_pred             hhHHHHHHhcCCChhhhhhcccCchhhHHHHHHHHHhhcCCCCCceeeEEEECCeech--h---------hHhHHHHHHH
Q 026069          140 SQWETCFDKLELDPKPIVDCYTSGYGTQLELKYAAETNSLVPPHQYVPWVVVDGQPLY--E---------DYENFISYVC  208 (244)
Q Consensus       140 ~~~~~Ca~~~gld~~~I~~C~~~~~G~~Ll~~~~~~T~~l~P~~~~vP~I~ING~~~~--~---------a~~nL~~~IC  208 (244)
                      +.+.+=+.+.|+|.+.+.+|.++..-...+.+..+.+.++.  ++.||+++|||++.-  .         ..+++..++=
T Consensus         7 ~~i~~~~~~~Gld~~~f~~~~~s~~~~~~v~~~~~~a~~~g--i~GtPtfiVnGky~v~~~~~~~~~~~~~~~~~~~~~~   84 (195)
T d1un2a_           7 SDIRDVFINAGIKGEEYDAAWNSFVVKSLVAQQEKAAADVQ--LRGVPAMFVNGKYQLNPQGMDTSNMDVFVQQYADTVK   84 (195)
T ss_dssp             HHHHHHHHHHTCCHHHHHHHHTSHHHHHHHHHHHHHHHHTT--CCSSSEEEETTTEEECGGGSCCSSHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHcCCCHHHHHHHHcCHHHHHHHHHHHHHHHHhC--CCcCCEEEECCeeeeccccccccchhhhHHHHHHHHH
Confidence            34667788999999999999999999999999988888766  999999999998641  0         2356666665


Q ss_pred             Hhh
Q 026069          209 KAY  211 (244)
Q Consensus       209 ~~y  211 (244)
                      .+.
T Consensus        85 ~L~   87 (195)
T d1un2a_          85 YLS   87 (195)
T ss_dssp             HHT
T ss_pred             HHH
Confidence            544

>d1r4wa_ c.47.1.13 (A:) Mitochondrial class kappa glutathione S-transferase {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: DsbA-like
domain: Mitochondrial class kappa glutathione S-transferase
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=93.62  E-value=0.38  Score=37.05  Aligned_cols=55  Identities=5%  Similarity=-0.084  Sum_probs=39.4

Q ss_pred             CchhhHHHHHHhcCCChhhhhhc---ccCchhhHHHHHHHHHhhcCCCCCceeeEEEECC
Q 026069          137 HKYSQWETCFDKLELDPKPIVDC---YTSGYGTQLELKYAAETNSLVPPHQYVPWVVVDG  193 (244)
Q Consensus       137 ~~~~~~~~Ca~~~gld~~~I~~C---~~~~~G~~Ll~~~~~~T~~l~P~~~~vP~I~ING  193 (244)
                      +..+.+..++...|++.+.+.+=   .++++.++.+.++-++..+.  ++..|||++|||
T Consensus       132 ~d~~~l~~~a~~~gl~~~~~~~~~~~~~~~~~k~~l~~~~~~A~~~--GvfGvPtfvi~~  189 (221)
T d1r4wa_         132 TESQNILSAAEKAGMATAQAQHLLNKISTELVKSKLRETTGAACKY--GAFGLPTTVAHV  189 (221)
T ss_dssp             SSHHHHHHHHHHTTCCHHHHHHHHTTTTSHHHHHHHHHHHHHHHHT--TCCSSCEEEEEE
T ss_pred             cchHHHHHHHHHhCccccccccccccccCHHHHHHHHHHHHHHHHC--CCeECCEEEEcc
Confidence            34456789999999987654442   45566777777766665543  599999999985

>d1wjka_ c.47.1.1 (A:) Thioredoxin-like structure containing protein C330018D20Rik {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Thioltransferase
domain: Thioredoxin-like structure containing protein C330018D20Rik
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=81.80  E-value=1.6  Score=30.28  Aligned_cols=47  Identities=19%  Similarity=0.212  Sum_probs=29.9

Q ss_pred             CCCCCCCCCCCCCCCceEEEEEEEeCChhhHHHHHHHHHHHHhhccCCcceeEEE
Q 026069           26 GSVSASRTSPSDVNSKVKLGLYYESLCPYSANFIINYLVKIFEDVDLLSIVDLHL   80 (244)
Q Consensus        26 ~~~~~~~~~~~~~~~kV~V~vYyESlCPds~~Fi~~qL~P~~~~~~l~~~idl~l   80 (244)
                      +|+++.+.+.+...-+ .|++|+-.-||.|...-     |.++.  +..-..+++
T Consensus         2 ~~~~~~~~~~~~~~~p-~i~lft~~~C~~C~~a~-----~~L~~--~~~~~~~~~   48 (100)
T d1wjka_           2 SSGSSGNLSASNRALP-VLTLFTKAPCPLCDEAK-----EVLQP--YKDRFILQE   48 (100)
T ss_dssp             CCCCCCCCCCSCCCCC-EEEEEECSSCHHHHHHH-----HHTST--TSSSSEEEE
T ss_pred             CCCCCCCchhcCCCCC-EEEEEECCCCCChHHHH-----HHHHH--hhhhcceEE
Confidence            4666666544333333 69999999999999763     66665  444333443

>d1z6na1 c.47.1.1 (A:1-166) Hypothetical protein PA1234 {Pseudomonas aeruginosa [TaxId: 287]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Thioltransferase
domain: Hypothetical protein PA1234
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=80.03  E-value=0.7  Score=34.86  Aligned_cols=44  Identities=16%  Similarity=0.131  Sum_probs=29.5

Q ss_pred             CCCCCceEEEEEEEeCChhhHHHHHHHHHHHHhhccCCcceeEEEEee
Q 026069           36 SDVNSKVKLGLYYESLCPYSANFIINYLVKIFEDVDLLSIVDLHLSPW   83 (244)
Q Consensus        36 ~~~~~kV~V~vYyESlCPds~~Fi~~qL~P~~~~~~l~~~idl~lvP~   83 (244)
                      ..-..++.|.+++++-||||++.+ --|....+   ....++|++|-.
T Consensus        50 ~~~~~~~~~l~~~~tWC~~C~~~~-P~l~~l~~---~~~~~~~~~i~~   93 (166)
T d1z6na1          50 QRIERRYRLLVAGEMWCPDCQINL-AALDFAQR---LQPNIELAIISK   93 (166)
T ss_dssp             HTCCSCEEEEEECCTTCHHHHHHH-HHHHHHHH---HCTTEEEEEECH
T ss_pred             HHhcCCeEEEEEEeCcCccHHHHH-HHHHHHHH---HCCCCcEEEEEC
Confidence            344678999999999999999986 22333333   234566766543