Citrus Sinensis ID: 026074

---

Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240----
Protein Sequence
MASASATMTIIPSKFQNIELFSPRSCRNYTLCHPNAPKSVNFFHFQNSRPSLYCNPLMRRVQHVLKTVSAVDSGVEVSITEPEDLITVKDAKIVVESQDEDKIQVRVDLTGDATQRVFDKVLTNLARSAPPIPGFRREKGGKTTKVPRDFLIQILGEERVTKFVVQEIVRSTLTDYTKKEGLNVKDKKVTTTQKAEELRKSFYPGNEFGFSAVLELEKSEVEESETETSSSSSSDEENDEVPVS
Secondary Structure (PSIPRED)
ccccccccEEEccccccccccccccccccccccccccccccccccccccccccccccccccccEEEEEEEEcccccccccccccccccccEEEEEEEccccEEEEEEEEcHHHHHHHHHHHHHHHHHccccccccccccccccccccHHHHHHHHcHHHHHHHHHHHHHHHHHHHHHHHccccccccccccHHHHHHHHHHccccccEEEEEEEEEEccccccccccccccccccccccccccc
Secondary Structure Prediction (SSPRO)
cccccccEEEEccccccccccccccccEEEEEcccccccccccccccccccccccHHHcccccEccEEEEEccccEEEcccccccEcHcccEEEEEccccccEEEEEEEcHHHHHHHHHHHHHHHHHccccccccccccccccccccHHHHHHHHcHHHHHHHHHHHHHHHHHHHHHHHccccccccccEEcccHHHHHHHcccccEEEEEEEEEEccccccccccccccHHHHHHHHcccccc
Coil and Loop (DISEMBL)
masasatmtiipskfqnielfsprscrnytlchpnapksvnffhfqnsrpslycnplMRRVQHVLKTVSAvdsgvevsitepedlitvkdAKIVVESQDEDKIQVRVDLTGDATQRVFDKVLTNLarsappipgfrrekggkttkvPRDFLIQILGEERVTKFVVQEIVRSTLTdytkkeglnvkdkkvTTTQKAEELrksfypgnefgFSAVLELEkseveesetetssssssdeendevpvs
Flexible Loop (DISEMBL)
masasatmtiipskfqniELFSPRSCRNYTLCHPNAPKSVNFFHFQNSRPSLYCNPLMRRVQHVLKTVsavdsgvevsitepedlitvkdakivvesqdedkiqvrvdltgdatqRVFDKVLtnlarsappipgfrrekggkttkvPRDFLIqilgeervtkfvVQEIVRstltdytkkeglnvkdkkvtttqkaeelrksfypgnefGFSAVLELEKSEVeesetetssssssdeendevpvs
Low Complexity Region (SEG)
MASASATMTIIPSKFQNIELFSPRSCRNYTLCHPNAPKSVNFFHFQNSRPSLYCNPLMRRVQHVLKTVSAVDSGVEVSITEPEDLITVKDAKIVVESQDEDKIQVRVDLTGDATQRVFDKVLTNLARSAPPIPGFRREKGGKTTKVPRDFLIQILGEERVTKFVVQEIVRSTLTDYTKKEGLNVKDKKVTTTQKAEELRKSFYPGNEFGFsavlelekseveesetetssssssdeendevpvs
Disordered region (IsUnstruct)
********TIIPSKFQNIELFSPRSCRNYTLCHPNAPKSVNFFHFQNSRPSLYCNPLMRRVQHVLKTVSAVDSGVEVSITEPEDLITVKDAKIVVESQDEDKIQVRVDLTGDATQRVFDKVLTNLAR****************TKVPRDFLIQILGEERVTKFVVQEIVRSTLTDYTKKEGLN******************FYPGNEFGFSAV*******************************
Disordered Region (DISOPRED)
***********PSKFQNIELFSPRSCRNYTLCHPNA***************************VLK******************************S*DEDKIQVRVDLTGDATQRVFDKVLTNLARSAPPIPGFRREKGGKTTKVPRDFLIQILGEERVTKFVVQEIVRSTLTDYTKKEGLNVKDKKVTT**KAEELRKSFYPGNEFGFSAVLELEKSEVEESETETSSSSSSDEENDEVPV*
Disordered Region (DISEMBL)
MASASATMTIIPSKFQNIELFSPRSCRNYTLCHPNAPKSVNFFHFQNSRPSLYCNPLMRRVQHVLKTVSAVDSGVEVSITEPEDLITVKDAKIVVESQDEDKIQVRVDLTGDATQRVFDKVLTNLARSAPPIPGFRREKGGKTTKVPRDFLIQILGEERVTKFVVQEIVRSTLTDYTKKEGLNVKDKKVTTTQKAEELRKSFYPGNEFGFSAVLELE***************************
Disordered Region (DISPRO)
*****ATMTIIPSKFQNIELFSPRSCRNYTLCHPNAPKSVNFFHFQNSRPSLYCNPLMRRVQHVLKTVSAVDSGVEVSITEPEDLITVKDAKIVVESQDEDKIQVRVDLTGDATQRVFDKVLTNLARSAPPIPGFRREKGGKTTKVPRDFLIQILGEERVTKFVVQEIVRSTLTDYTKKEGLNVKDKKVTTTQKAEELRKSFYPGNEFGFSAVLELEKS*************************
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Signal Peptide (SignalP NN Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Coiled Coils (COILS)
MASASATMTIIPSKFQNIELFSPRSCRNYTLCHPNAPKSVNFFHFQNSRPSLYCNPLMRRVQHVLKTVSAVDSGVEVSITEPEDLITVKDAKIVVESQDEDKIQVRVDLTGDATQRVFDKVLTNLARSAPPIPGFRREKGGKTTKVPRDFLIQILGEERVTKFVVQEIVRSTLTDYTKKEGLNVKDKKVTTTQKAEELRKSFYPGNEFGFSAVLELEKSEVEESETETSSSSSSDEENDEVPVS
Positional Conservation
no confident homologs detected

---

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	244	2.2.26 [Sep-21-2011]
B7JW76	455	Trigger factor OS=Cyanoth	yes	no	0.475	0.254	0.293	4e-08
B0JL93	464	Trigger factor OS=Microcy	yes	no	0.475	0.25	0.293	5e-07
Q118P4	485	Trigger factor OS=Trichod	yes	no	0.442	0.222	0.284	9e-07
Q8YQX9	471	Trigger factor OS=Nostoc	yes	no	0.438	0.227	0.264	3e-06
Q3M725	471	Trigger factor OS=Anabaen	yes	no	0.438	0.227	0.264	3e-06
Q8DLI3	473	Trigger factor OS=Thermos	yes	no	0.463	0.238	0.255	1e-05
B2IT89	480	Trigger factor OS=Nostoc	yes	no	0.438	0.222	0.273	1e-05
Q935Z3	474	Trigger factor OS=Synecho	yes	no	0.479	0.246	0.259	1e-05
Q5N1P5	474	Trigger factor OS=Synecho	yes	no	0.479	0.246	0.259	1e-05
Q3B0U0	447	Trigger factor OS=Synecho	yes	no	0.459	0.250	0.283	8e-05

>sp|B7JW76|TIG_CYAP8 Trigger factor OS=Cyanothece sp. (strain PCC 8801) GN=tig PE=3 SV=1

 Score = 58.5 bits (140), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 37/126 (29%), Positives = 72/126 (57%), Gaps = 10/126 (7%)

Query: 92  KIVVESQDEDKIQVRVDLTGDATQRVFDKVLTNLARSAPPIPGFRREKGGKTTKVPRDFL 151
           K+  E   + +I + ++++ +A+++ ++  +  LAR+A  IPGFR+       KVPR  L
Sbjct: 2   KVTQEKLPDSQIGLEIEISAEASKKAYETKVNTLARTAN-IPGFRK------GKVPRQIL 54

Query: 152 IQILGEERVTKFVVQEIVRSTLTDYTKKEGL-NVKDKKVTTTQKAEELRKSFYPGNEFGF 210
           +Q +G E +    +QE++  +L    K+E L ++ D ++ +  K +EL + F PG    F
Sbjct: 55  LQRIGTEYIKATTLQELIEDSLKAAIKQESLESIGDFELKS--KFDELVQQFKPGEPLTF 112

Query: 211 SAVLEL 216
           SA +++
Sbjct: 113 SAAIDV 118

Involved in protein export. Acts as a chaperone by maintaining the newly synthesized protein in an open conformation. Functions as a peptidyl-prolyl cis-trans isomerase.
Cyanothece sp. (strain PCC 8801) (taxid: 41431)
EC: 5EC: .EC: 2EC: .EC: 1EC: .EC: 8

>sp|B0JL93|TIG_MICAN Trigger factor OS=Microcystis aeruginosa (strain NIES-843) GN=tig PE=3 SV=1

 Score = 54.7 bits (130), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 37/126 (29%), Positives = 70/126 (55%), Gaps = 10/126 (7%)

Query: 92  KIVVESQDEDKIQVRVDLTGDATQRVFDKVLTNLARSAPPIPGFRREKGGKTTKVPRDFL 151
           K++ E     +I + +++  + T+   ++V+ NLA+S   IPGFR        KVPR  L
Sbjct: 2   KVIQEKLPASQIGLEIEIPAETTKNTHEQVVKNLAKSVN-IPGFR------PGKVPRQIL 54

Query: 152 IQILGEERVTKFVVQEIVRSTLTDYTKKEGL-NVKDKKVTTTQKAEELRKSFYPGNEFGF 210
           +Q LG + V   V++E++ + L    K+EG+ ++ + ++ +  K E+L  ++ PG    F
Sbjct: 55  LQRLGTKAVKAAVIEELIENCLESALKQEGIESLGNPQLLS--KFEDLIAAYEPGKALTF 112

Query: 211 SAVLEL 216
           S  L++
Sbjct: 113 SVSLDV 118

Involved in protein export. Acts as a chaperone by maintaining the newly synthesized protein in an open conformation. Functions as a peptidyl-prolyl cis-trans isomerase.

Microcystis aeruginosa (strain NIES-843) (taxid: 449447)

EC: 5

EC: .

EC: 2

EC: .

EC: 1

EC: .

EC: 8

>sp|Q118P4|TIG_TRIEI Trigger factor OS=Trichodesmium erythraeum (strain IMS101) GN=tig PE=3 SV=1

 Score = 53.9 bits (128), Expect = 9e-07,   Method: Compositional matrix adjust.
 Identities = 33/116 (28%), Positives = 64/116 (55%), Gaps = 8/116 (6%)

Query: 102 KIQVRVDLTGDATQRVFDKVLTNLARSAPPIPGFRREKGGKTTKVPRDFLIQILGEERVT 161
           +I + ++++ + ++  +++++    RSA  IPGFR+       KVPR+ LIQ LG+  + 
Sbjct: 12  QISLEIEISPEMSKNAYEQIIKKYIRSAN-IPGFRK------GKVPRNILIQRLGKNYIK 64

Query: 162 KFVVQEIVRSTLTDYTKKEGLNVKDKKVTTTQKAEELRKSFYPGNEFGFSAVLELE 217
              + +++ + L    ++E +    +    T+  EEL K F PG E  FSA +++E
Sbjct: 65  AMALDDLINNCLEKAREQESIKAIGQFELKTE-FEELVKDFEPGKEMAFSAKVDVE 119

Involved in protein export. Acts as a chaperone by maintaining the newly synthesized protein in an open conformation. Functions as a peptidyl-prolyl cis-trans isomerase.

Trichodesmium erythraeum (strain IMS101) (taxid: 203124)

EC: 5

EC: .

EC: 2

EC: .

EC: 1

EC: .

EC: 8

>sp|Q8YQX9|TIG_NOSS1 Trigger factor OS=Nostoc sp. (strain PCC 7120 / UTEX 2576) GN=tig PE=3 SV=1

 Score = 52.4 bits (124), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 31/117 (26%), Positives = 68/117 (58%), Gaps = 10/117 (8%)

Query: 102 KIQVRVDLTGDATQRVFDKVLTNLARSAPPIPGFRREKGGKTTKVPRDFLIQILGEERVT 161
           +I + +++T + TQ+ +++V+ NL+R+   IPGFR+       KVPR  L+Q LG+  + 
Sbjct: 12  QIGLEIEITPEITQKTYEQVIKNLSRTV-NIPGFRK------GKVPRQVLLQRLGKTHIK 64

Query: 162 KFVVQEIVRSTLTDYTKKEGL-NVKDKKVTTTQKAEELRKSFYPGNEFGFSAVLELE 217
              ++E+++  +    K+E +  +   ++ ++   ++L  S+ PG    F+A +++E
Sbjct: 65  AAALEELLQDGIEQAIKQESIAAIGQPRLRSS--FDDLINSYEPGQPLTFTAAVDVE 119

Involved in protein export. Acts as a chaperone by maintaining the newly synthesized protein in an open conformation. Functions as a peptidyl-prolyl cis-trans isomerase.

Nostoc sp. (strain PCC 7120 / UTEX 2576) (taxid: 103690)

EC: 5

EC: .

EC: 2

EC: .

EC: 1

EC: .

EC: 8

>sp|Q3M725|TIG_ANAVT Trigger factor OS=Anabaena variabilis (strain ATCC 29413 / PCC 7937) GN=tig PE=3 SV=1

 Score = 52.4 bits (124), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 31/117 (26%), Positives = 68/117 (58%), Gaps = 10/117 (8%)

Query: 102 KIQVRVDLTGDATQRVFDKVLTNLARSAPPIPGFRREKGGKTTKVPRDFLIQILGEERVT 161
           +I + +++T + TQ+ +++V+ NL+R+   IPGFR+       KVPR  L+Q LG+  + 
Sbjct: 12  QIGLEIEITPEITQKTYEQVIKNLSRTV-NIPGFRK------GKVPRQVLLQRLGKTHIK 64

Query: 162 KFVVQEIVRSTLTDYTKKEGL-NVKDKKVTTTQKAEELRKSFYPGNEFGFSAVLELE 217
              ++E+++  +    K+E +  +   ++ ++   ++L  S+ PG    F+A +++E
Sbjct: 65  AAALEELLQDGIEQAIKQESIAAIGQPRLRSS--FDDLINSYEPGQPLTFTAAVDVE 119

Involved in protein export. Acts as a chaperone by maintaining the newly synthesized protein in an open conformation. Functions as a peptidyl-prolyl cis-trans isomerase.

Anabaena variabilis (strain ATCC 29413 / PCC 7937) (taxid: 240292)

EC: 5

EC: .

EC: 2

EC: .

EC: 1

EC: .

EC: 8

>sp|Q8DLI3|TIG_THEEB Trigger factor OS=Thermosynechococcus elongatus (strain BP-1) GN=tig PE=3 SV=1

 Score = 50.4 bits (119), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 33/129 (25%), Positives = 65/129 (50%), Gaps = 16/129 (12%)

Query: 93  IVVESQDEDKIQVRVDLTGDATQRVFDKVLTNLARSAPPIPGFRREKGGKTTKVPRDFLI 152
           +  E +   ++   ++++G  +Q+V+++V+ +L R    +PGFR  KG    K PR  ++
Sbjct: 1   MTTEPRSNSQLLATIEVSGTHSQQVYNQVVNDLLRHTQ-VPGFR--KG----KAPRQLVL 53

Query: 153 QILGEERVTKFVVQEIVRSTLTDYTKKEGL----NVKDKKVTTTQKAEELRKSFYPGNEF 208
           Q LG ER+    +++++   +    +K  +    N++     T     EL   F+PG  F
Sbjct: 54  QQLGRERLRYLAMEKLIEDAVKTAVEKNNIPYLGNLELAGGIT-----ELLDQFHPGENF 108

Query: 209 GFSAVLELE 217
            FS   ++E
Sbjct: 109 SFSVTFDVE 117

Involved in protein export. Acts as a chaperone by maintaining the newly synthesized protein in an open conformation. Functions as a peptidyl-prolyl cis-trans isomerase.

Thermosynechococcus elongatus (strain BP-1) (taxid: 197221)

EC: 5

EC: .

EC: 2

EC: .

EC: 1

EC: .

EC: 8

>sp|B2IT89|TIG_NOSP7 Trigger factor OS=Nostoc punctiforme (strain ATCC 29133 / PCC 73102) GN=tig PE=3 SV=1

 Score = 50.4 bits (119), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 32/117 (27%), Positives = 66/117 (56%), Gaps = 10/117 (8%)

Query: 102 KIQVRVDLTGDATQRVFDKVLTNLARSAPPIPGFRREKGGKTTKVPRDFLIQILGEERVT 161
           +I + +++T + T++ +++V+ NLA +A  IPGFRR       KVPR  L+Q LG  R+ 
Sbjct: 12  QIGLEIEITPEITKQTYEQVIKNLASTAN-IPGFRR------GKVPRPILLQRLGTTRIK 64

Query: 162 KFVVQEIVRSTLTDYTKKEGL-NVKDKKVTTTQKAEELRKSFYPGNEFGFSAVLELE 217
              ++E+++  +    K+E +  +   ++ ++   E+L  ++ PG      A +++E
Sbjct: 65  AAALEELIQDGIEQAVKQEAIPAIGQPQLRSS--FEDLINNYEPGKPLTILAAVDVE 119

Involved in protein export. Acts as a chaperone by maintaining the newly synthesized protein in an open conformation. Functions as a peptidyl-prolyl cis-trans isomerase.

Nostoc punctiforme (strain ATCC 29133 / PCC 73102) (taxid: 63737)

EC: 5

EC: .

EC: 2

EC: .

EC: 1

EC: .

EC: 8

>sp|Q935Z3|TIG_SYNE7 Trigger factor OS=Synechococcus elongatus (strain PCC 7942) GN=tig PE=3 SV=1

 Score = 50.4 bits (119), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 33/127 (25%), Positives = 70/127 (55%), Gaps = 10/127 (7%)

Query: 92  KIVVESQDEDKIQVRVDLTGDATQRVFDKVLTNLARSAPPIPGFRREKGGKTTKVPRDFL 151
           K+  E     ++ ++++++G+ +++V+++ LT L+R     PGFR        KVPR  L
Sbjct: 4   KVTQEKLPASRVGLQIEVSGEQSRQVYERTLTRLSREVR-FPGFR------PGKVPRPVL 56

Query: 152 IQILGEERVTKFVVQEIVRSTLTDYTKKEGL-NVKDKKVTTTQKAEELRKSFYPGNEFGF 210
           IQ LGE  +    ++++V+ +L     +E +  + + ++++    E L  +F PG  F F
Sbjct: 57  IQRLGETALKANAIEDLVQQSLESAIAQESIPAIGNYQLSS--DFETLVAAFQPGESFSF 114

Query: 211 SAVLELE 217
            A ++++
Sbjct: 115 EASVDVQ 121

Involved in protein export. Acts as a chaperone by maintaining the newly synthesized protein in an open conformation. Functions as a peptidyl-prolyl cis-trans isomerase.

Synechococcus elongatus (strain PCC 7942) (taxid: 1140)

EC: 5

EC: .

EC: 2

EC: .

EC: 1

EC: .

EC: 8

>sp|Q5N1P5|TIG_SYNP6 Trigger factor OS=Synechococcus sp. (strain ATCC 27144 / PCC 6301 / SAUG 1402/1) GN=tig PE=3 SV=1

 Score = 50.1 bits (118), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 33/127 (25%), Positives = 70/127 (55%), Gaps = 10/127 (7%)

Query: 92  KIVVESQDEDKIQVRVDLTGDATQRVFDKVLTNLARSAPPIPGFRREKGGKTTKVPRDFL 151
           K+  E     ++ ++++++G+ +++V+++ LT L+R     PGFR        KVPR  L
Sbjct: 4   KVTQEKLPASRVGLQIEVSGEQSRQVYERTLTRLSREVR-FPGFR------PGKVPRPVL 56

Query: 152 IQILGEERVTKFVVQEIVRSTLTDYTKKEGL-NVKDKKVTTTQKAEELRKSFYPGNEFGF 210
           IQ LGE  +    ++++V+ +L     +E +  + + ++++    E L  +F PG  F F
Sbjct: 57  IQRLGETALKANAIEDLVQQSLESAIAQESIPAIGNYQLSS--DFETLVAAFQPGKSFSF 114

Query: 211 SAVLELE 217
            A ++++
Sbjct: 115 EASVDVQ 121

Involved in protein export. Acts as a chaperone by maintaining the newly synthesized protein in an open conformation. Functions as a peptidyl-prolyl cis-trans isomerase.

Synechococcus sp. (strain ATCC 27144 / PCC 6301 / SAUG 1402/1) (taxid: 269084)

EC: 5

EC: .

EC: 2

EC: .

EC: 1

EC: .

EC: 8

>sp|Q3B0U0|TIG_SYNS9 Trigger factor OS=Synechococcus sp. (strain CC9902) GN=tig PE=3 SV=1

 Score = 47.8 bits (112), Expect = 8e-05,   Method: Compositional matrix adjust.
 Identities = 34/120 (28%), Positives = 63/120 (52%), Gaps = 8/120 (6%)

Query: 92  KIVVESQDEDKIQVRVDLTGDATQRVFDKVLTNLARSAPPIPGFRREKGGKTTKVPRDFL 151
           K+  ES+   ++ V V + G+     +++ + +L+RS   +PGFR+       KVPR  L
Sbjct: 7   KVSTESRPSSRLAVTVTVPGERCTASYEEAIKSLSRSIN-LPGFRK------GKVPRSVL 59

Query: 152 IQILGEERVTKFVVQEIVRSTLTDYTKKEGLNVKDKKVTTTQKAEELRKSFYPGNEFGFS 211
           +Q LG  R+    +++++ S   D  K+E L    +   ++   + L +SF PG+E  F+
Sbjct: 60  VQQLGGVRIKATALEKLIDSAWRDAIKQESLEPISQPDLSS-GFDGLLESFNPGDELTFT 118

Involved in protein export. Acts as a chaperone by maintaining the newly synthesized protein in an open conformation. Functions as a peptidyl-prolyl cis-trans isomerase.

Synechococcus sp. (strain CC9902) (taxid: 316279)

EC: 5

EC: .

EC: 2

EC: .

EC: 1

EC: .

EC: 8

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	244
255579456	216	conserved hypothetical protein [Ricinus	0.684	0.773	0.658	3e-57
225434092	232	PREDICTED: uncharacterized protein LOC10	0.860	0.905	0.569	2e-56
296084278	440	unnamed protein product [Vitis vinifera]	0.860	0.477	0.560	1e-55
388492748	233	unknown [Lotus japonicus]	0.696	0.729	0.559	4e-52
449445840	247	PREDICTED: uncharacterized protein LOC10	0.651	0.643	0.625	4e-52
388513321	221	unknown [Medicago truncatula]	0.659	0.728	0.555	1e-47
115441583	229	Os01g0894700 [Oryza sativa Japonica Grou	0.610	0.650	0.525	6e-37
224122010	123	predicted protein [Populus trichocarpa]	0.426	0.845	0.723	7e-37
222619669	398	hypothetical protein OsJ_04389 [Oryza sa	0.610	0.374	0.525	7e-37
357126306	239	PREDICTED: uncharacterized protein LOC10	0.836	0.853	0.418	6e-36

>gi|255579456|ref|XP_002530571.1| conserved hypothetical protein [Ricinus communis] gi|223529870|gb|EEF31801.1| conserved hypothetical protein [Ricinus communis]

 Score =  227 bits (579), Expect = 3e-57,   Method: Compositional matrix adjust.
 Identities = 114/173 (65%), Positives = 141/173 (81%), Gaps = 6/173 (3%)

Query: 59  RRVQHVLKTVSAVDSGVEVSITEPED-LITVKDAKIVVESQDEDKIQVRVDLTGDATQRV 117
           R ++HV K +SAV SG+E + T+P+D  IT+K+AK+VVES  E+KIQ+RVDL+GD T+ V
Sbjct: 49  RVLEHVFKPISAVGSGLETTFTDPKDNAITLKNAKVVVESMQENKIQLRVDLSGDETEIV 108

Query: 118 FDKVLTNLARSAPPIPGFRREKGGKTTKVPRDFLIQILGEERVTKFVVQEIVRSTLTDYT 177
           F KVL NLAR+APPIPGFRREKGG    VPRDFL+QILGEERVTKFV+QEIV S++ DY 
Sbjct: 109 FSKVLANLARTAPPIPGFRREKGGDFRLVPRDFLLQILGEERVTKFVIQEIVSSSVADYV 168

Query: 178 KKEGLNVKDKKVTTTQKAEELRKSFYPGNEFGFSAVLELEKSEVEESETETSS 230
           KKE LNVK+ KV T Q+A+EL+K F PGN+FGF+AVLEL     EE++TETSS
Sbjct: 169 KKENLNVKENKVNTVQEADELKKLFIPGNDFGFNAVLEL-----EETKTETSS 216

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225434092|ref|XP_002275949.1| PREDICTED: uncharacterized protein LOC100247585 [Vitis vinifera]

 Score =  224 bits (572), Expect = 2e-56,   Method: Compositional matrix adjust.
 Identities = 123/216 (56%), Positives = 156/216 (72%), Gaps = 6/216 (2%)

Query: 6   ATMTI-IPSKFQNIELFSPRSCRNYTLCHPNAPKSVNFFHFQNSRPS--LY-CNPLMRRV 61
           A MT+ I S+  N   F  R C ++ +   N   S++F H Q       LY CN     +
Sbjct: 2   ACMTMAISSQSLNFNRFFVRCCHDHVISCQNT-TSISFPHRQQDLCGRLLYPCNLHQGSL 60

Query: 62  QHVLKTVSAVDSGVEVSITEPEDL-ITVKDAKIVVESQDEDKIQVRVDLTGDATQRVFDK 120
           + + K +SAV SG + SI +P+D  IT+K+AKIVVESQ++D+IQ+RVD+ G  TQRVFD 
Sbjct: 61  RFLSKPISAVGSGSKASIIDPKDNDITIKNAKIVVESQEDDEIQLRVDVAGVDTQRVFDH 120

Query: 121 VLTNLARSAPPIPGFRREKGGKTTKVPRDFLIQILGEERVTKFVVQEIVRSTLTDYTKKE 180
           VLTNLARSAPPIPGFRR+KGGKT+ VP+ FL+QILGEERVTKFV+QEI+ +T++DY  KE
Sbjct: 121 VLTNLARSAPPIPGFRRQKGGKTSNVPKSFLLQILGEERVTKFVIQEIITATVSDYVMKE 180

Query: 181 GLNVKDKKVTTTQKAEELRKSFYPGNEFGFSAVLEL 216
            LNVKDKK+TTT  AEEL+  F PGNEF F+A LEL
Sbjct: 181 NLNVKDKKITTTPAAEELKSLFTPGNEFRFNATLEL 216

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|296084278|emb|CBI24666.3| unnamed protein product [Vitis vinifera]

 Score =  222 bits (565), Expect = 1e-55,   Method: Compositional matrix adjust.
 Identities = 121/216 (56%), Positives = 154/216 (71%), Gaps = 6/216 (2%)

Query: 6   ATMTI-IPSKFQNIELFSPRSCRNYTLCHPNAPKSVNFFHFQNSRPS--LY-CNPLMRRV 61
           A MT+ I S+  N   F  R C ++ +   N   S++F H Q       LY CN     +
Sbjct: 210 ACMTMAISSQSLNFNRFFVRCCHDHVISCQNTT-SISFPHRQQDLCGRLLYPCNLHQGSL 268

Query: 62  QHVLKTVSAVDSGVEVSITEPEDL-ITVKDAKIVVESQDEDKIQVRVDLTGDATQRVFDK 120
           + + K +SAV SG + SI +P+D  IT+K+AKIVVESQ++D+IQ+RVD+ G  TQRVFD 
Sbjct: 269 RFLSKPISAVGSGSKASIIDPKDNDITIKNAKIVVESQEDDEIQLRVDVAGVDTQRVFDH 328

Query: 121 VLTNLARSAPPIPGFRREKGGKTTKVPRDFLIQILGEERVTKFVVQEIVRSTLTDYTKKE 180
           VLTNLARSAPPIPGFRR+KGG +  VP+ FL+QILGEERVTKFV+QEI+ +T++DY  KE
Sbjct: 329 VLTNLARSAPPIPGFRRQKGGNSLYVPKSFLLQILGEERVTKFVIQEIITATVSDYVMKE 388

Query: 181 GLNVKDKKVTTTQKAEELRKSFYPGNEFGFSAVLEL 216
            LNVKDKK+TTT  AEEL+  F PGNEF F+A LEL
Sbjct: 389 NLNVKDKKITTTPAAEELKSLFTPGNEFRFNATLEL 424

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|388492748|gb|AFK34440.1| unknown [Lotus japonicus]

 Score =  210 bits (535), Expect = 4e-52,   Method: Compositional matrix adjust.
 Identities = 103/184 (55%), Positives = 139/184 (75%), Gaps = 14/184 (7%)

Query: 51  SLYCNPLMRR-------------VQHVLKTVSAVDSGVEVSITEP-EDLITVKDAKIVVE 96
           SL   P +RR             ++H+   +SAV+SG+E SIT+  E+   + +A+IV+E
Sbjct: 47  SLSLGPPLRRKSLDILSSSTRTTLRHLNTPISAVNSGLEASITDSDENSAILTNAQIVLE 106

Query: 97  SQDEDKIQVRVDLTGDATQRVFDKVLTNLARSAPPIPGFRREKGGKTTKVPRDFLIQILG 156
           S+DE KIQ+RVDLTGD T+RVFD+ L +L R+APP+PGFR +KGGK++K+P+ FL+QILG
Sbjct: 107 SEDESKIQLRVDLTGDQTERVFDRTLISLGRTAPPVPGFRMQKGGKSSKIPKSFLVQILG 166

Query: 157 EERVTKFVVQEIVRSTLTDYTKKEGLNVKDKKVTTTQKAEELRKSFYPGNEFGFSAVLEL 216
           EERVTKFV+QEI+ ST+ +Y KKE L+VK KKV+TTQ AEEL+KSF PG EFGF+ ++E 
Sbjct: 167 EERVTKFVIQEILNSTMANYAKKENLDVKGKKVSTTQTAEELKKSFTPGKEFGFNVIIEP 226

Query: 217 EKSE 220
           E SE
Sbjct: 227 ENSE 230

Source: Lotus japonicus

Species: Lotus japonicus

Genus: Lotus

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449445840|ref|XP_004140680.1| PREDICTED: uncharacterized protein LOC101212225 [Cucumis sativus]

 Score =  210 bits (534), Expect = 4e-52,   Method: Compositional matrix adjust.
 Identities = 100/160 (62%), Positives = 135/160 (84%), Gaps = 1/160 (0%)

Query: 66  KTVSAVDSGVEVSITEPE-DLITVKDAKIVVESQDEDKIQVRVDLTGDATQRVFDKVLTN 124
           K  S   SG+E +IT+ + + IT+K+AK+VVES++E+KIQ+RVDLTGD TQ+VFD+VLTN
Sbjct: 88  KPTSIASSGLEAAITDYKGNPITLKNAKVVVESEEENKIQLRVDLTGDETQKVFDQVLTN 147

Query: 125 LARSAPPIPGFRREKGGKTTKVPRDFLIQILGEERVTKFVVQEIVRSTLTDYTKKEGLNV 184
           LARSAPP+PGFR++KGGKT+ VP+ FL+++LG++RVTKF++QEI+ ST+ DY KKE +NV
Sbjct: 148 LARSAPPMPGFRKQKGGKTSNVPKSFLLEVLGKDRVTKFIIQEILNSTMVDYAKKENINV 207

Query: 185 KDKKVTTTQKAEELRKSFYPGNEFGFSAVLELEKSEVEES 224
           KDKKV+TTQ A+EL+  F PG EFGF+A+LELE +   ES
Sbjct: 208 KDKKVSTTQTADELKVLFNPGKEFGFNAILELESASDAES 247

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|388513321|gb|AFK44722.1| unknown [Medicago truncatula]

 Score =  195 bits (496), Expect = 1e-47,   Method: Compositional matrix adjust.
 Identities = 90/162 (55%), Positives = 127/162 (78%), Gaps = 1/162 (0%)

Query: 61  VQHVLKTVSAVDSGVEVSITEPEDLIT-VKDAKIVVESQDEDKIQVRVDLTGDATQRVFD 119
           ++H+   +SAV+SG+E SIT+  D+   + DA +V E  D+++IQ+RVDLTG  TQ+VFD
Sbjct: 56  LRHLNTPISAVNSGLEASITDSNDISAFLTDATVVAEPGDDNRIQLRVDLTGVQTQKVFD 115

Query: 120 KVLTNLARSAPPIPGFRREKGGKTTKVPRDFLIQILGEERVTKFVVQEIVRSTLTDYTKK 179
           ++  NL R+APP+PGFR +KGGK++K+P+DFL+Q+LGEERVTKF +QEI+  T+ DYTKK
Sbjct: 116 RIPINLGRTAPPVPGFRMQKGGKSSKIPKDFLLQMLGEERVTKFAIQEILNCTMADYTKK 175

Query: 180 EGLNVKDKKVTTTQKAEELRKSFYPGNEFGFSAVLELEKSEV 221
           E L+ KDKKV+T Q  +EL+KSF  G EFGF+ ++E + SEV
Sbjct: 176 ENLDAKDKKVSTIQTIQELKKSFTAGKEFGFNVLIEPKNSEV 217

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|115441583|ref|NP_001045071.1| Os01g0894700 [Oryza sativa Japonica Group] gi|57899810|dbj|BAD87555.1| unknown protein [Oryza sativa Japonica Group] gi|113534602|dbj|BAF06985.1| Os01g0894700 [Oryza sativa Japonica Group] gi|218189519|gb|EEC71946.1| hypothetical protein OsI_04765 [Oryza sativa Indica Group]

 Score =  160 bits (404), Expect = 6e-37,   Method: Compositional matrix adjust.
 Identities = 81/154 (52%), Positives = 113/154 (73%), Gaps = 5/154 (3%)

Query: 86  ITVKDAKIVVESQDEDKIQVRVDLTGDATQRVFDKVLTNLARSAPPIPGFRREKGGKTTK 145
           +++++AK  V S+D++ I VRVDL G ATQ+VFD+ LT+LAR APP+PGFR+ KGG+T+ 
Sbjct: 78  LSLQNAKTSVVSRDDETINVRVDLPGKATQKVFDEALTSLARDAPPVPGFRKSKGGRTSN 137

Query: 146 VPRDFLIQILGEERVTKFVVQEIVRSTLTDYTKKEGLNVKDKKVTTTQKAEELRKSFYPG 205
           +P   L+Q+LG+ RVTKFV+QEI+  T+ D+ KKE L V + ++ TTQ  EEL  SF PG
Sbjct: 138 IPSSILLQMLGKSRVTKFVLQEILSITVGDFVKKENLKV-NPEIKTTQSEEELESSFTPG 196

Query: 206 NEFGFSAVLELEKSEVEESETETSSSSSSDEEND 239
           + F FS VL+LEK E +    ETS +S SDE ++
Sbjct: 197 SSFSFSVVLQLEKPESD----ETSENSESDEASE 226

Source: Oryza sativa Japonica Group

Species: Oryza sativa

Genus: Oryza

Family: Poaceae

Order: Poales

Class: Liliopsida

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224122010|ref|XP_002330708.1| predicted protein [Populus trichocarpa] gi|222872312|gb|EEF09443.1| predicted protein [Populus trichocarpa]

 Score =  159 bits (403), Expect = 7e-37,   Method: Compositional matrix adjust.
 Identities = 76/105 (72%), Positives = 91/105 (86%), Gaps = 1/105 (0%)

Query: 76  EVSITEP-EDLITVKDAKIVVESQDEDKIQVRVDLTGDATQRVFDKVLTNLARSAPPIPG 134
           + SI E  E LI +K+ KIV+ESQ+EDK+QVRVDL+GD TQ+VF+K LT+LARSAPPIPG
Sbjct: 12  QASIAETNEKLIALKNVKIVIESQEEDKMQVRVDLSGDETQKVFNKALTDLARSAPPIPG 71

Query: 135 FRREKGGKTTKVPRDFLIQILGEERVTKFVVQEIVRSTLTDYTKK 179
           FRREKGGKTT VPR+FL+QILGE+RVT FV+QEIV ST+ DY KK
Sbjct: 72  FRREKGGKTTNVPREFLLQILGEDRVTNFVIQEIVTSTMADYVKK 116

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|222619669|gb|EEE55801.1| hypothetical protein OsJ_04389 [Oryza sativa Japonica Group]

 Score =  159 bits (403), Expect = 7e-37,   Method: Compositional matrix adjust.
 Identities = 81/154 (52%), Positives = 113/154 (73%), Gaps = 5/154 (3%)

Query: 86  ITVKDAKIVVESQDEDKIQVRVDLTGDATQRVFDKVLTNLARSAPPIPGFRREKGGKTTK 145
           +++++AK  V S+D++ I VRVDL G ATQ+VFD+ LT+LAR APP+PGFR+ KGG+T+ 
Sbjct: 247 LSLQNAKTSVVSRDDETINVRVDLPGKATQKVFDEALTSLARDAPPVPGFRKSKGGRTSN 306

Query: 146 VPRDFLIQILGEERVTKFVVQEIVRSTLTDYTKKEGLNVKDKKVTTTQKAEELRKSFYPG 205
           +P   L+Q+LG+ RVTKFV+QEI+  T+ D+ KKE L V + ++ TTQ  EEL  SF PG
Sbjct: 307 IPSSILLQMLGKSRVTKFVLQEILSITVGDFVKKENLKV-NPEIKTTQSEEELESSFTPG 365

Query: 206 NEFGFSAVLELEKSEVEESETETSSSSSSDEEND 239
           + F FS VL+LEK E +    ETS +S SDE ++
Sbjct: 366 SSFSFSVVLQLEKPESD----ETSENSESDEASE 395

Source: Oryza sativa Japonica Group

Species: Oryza sativa

Genus: Oryza

Family: Poaceae

Order: Poales

Class: Liliopsida

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357126306|ref|XP_003564829.1| PREDICTED: uncharacterized protein LOC100837766 isoform 3 [Brachypodium distachyon]

 Score =  156 bits (395), Expect = 6e-36,   Method: Compositional matrix adjust.
 Identities = 90/215 (41%), Positives = 133/215 (61%), Gaps = 11/215 (5%)

Query: 36  APKSVNFFHFQN----SRPSLYCNPLM---RRVQHVLKTVSAVDSGVEVSITEPEDL--I 86
           AP+   +  FQ     +RP+     L+   R ++H    VSAV SG   S+ + E+   +
Sbjct: 13  APRFRTYSQFQTGDGCNRPTHAHGWLISTGRSLRHTFLPVSAVRSGRGSSVAQEEEKTGL 72

Query: 87  TVKDAKIVVESQDEDKIQVRVDLTGDATQRVFDKVLTNLARSAPPIPGFRREKGGKTTKV 146
           ++ + K  V S+D++ I +R+DL G ATQ+VFD+ LT+LAR APP+PGFRR KGGKT+ +
Sbjct: 73  SLDNFKTTVVSRDDENINLRIDLPGKATQKVFDEALTSLARDAPPVPGFRRSKGGKTSNI 132

Query: 147 PRDFLIQILGEERVTKFVVQEIVRSTLTDYTKKEGLNVKDKKVTTTQKAEELRKSFYPGN 206
           P   L+ +LG+ RVTKF++QEI+  T+ D+ KKE L V + ++ TTQ   +L  SF PG+
Sbjct: 133 PSSILLAMLGKSRVTKFILQEILSVTVGDFVKKENLKV-NPEIATTQSEGDLESSFTPGS 191

Query: 207 EFGFSAVLELEKSEVEESETETSSSSSSDEENDEV 241
            F F+ +L+LEK E +  E        SDE + EV
Sbjct: 192 SFRFNVILQLEK-ESDSDEASEEVQVDSDEASGEV 225

Source: Brachypodium distachyon

Species: Brachypodium distachyon

Genus: Brachypodium

Family: Poaceae

Order: Poales

Class: Liliopsida

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	244
TAIR|locus:505006279	199	AT2G30695 "AT2G30695" [Arabido	0.557	0.683	0.419	5.3e-24

TAIR|locus:505006279 AT2G30695 "AT2G30695" [Arabidopsis thaliana (taxid:3702)]

 Score = 275 (101.9 bits), Expect = 5.3e-24, P = 5.3e-24
 Identities = 60/143 (41%), Positives = 88/143 (61%)

Query:    68 VSAVDSGVEVSITEPEDLITVKDAKIVVESQDEDKIQVRVDLTGDATQRVFDKVLTNLAR 127
             V A  S VE S  +   LIT    K+  E+ +E K+ V+V  +G+ TQ VF+ V   +  
Sbjct:    54 VCAAPSDVETSSKDESVLIT----KVETETSNEVKVHVQV--SGEKTQTVFNHVFEKMVA 107

Query:   128 SAPPIPGFRREKGGKTTKVPRDFLIQILGEERVTKFVVQEIVRSTLTDYTKKEGLNVKDK 187
             +A PIPGFRR KGGKT  +P+D L++ILG  +V K V+++++ S + DY K+E L V  K
Sbjct:   108 AAQPIPGFRRVKGGKTPNIPKDVLLEILGYSKVYKQVIKKLINSAIEDYVKQEDLKV-GK 166

Query:   188 KVTTTQKAEELRKSFYPGNEFGF 210
             ++T  Q  E+L ++F PG  F F
Sbjct:   167 ELTVVQSYEDLEETFEPGESFSF 189


Parameters:
  V=100
  filter=SEG
  E=0.001

  ctxfactor=1.00

  Query                        -----  As Used  -----    -----  Computed  ----
  Frame  MatID Matrix name     Lambda    K       H      Lambda    K       H
   +0      0   BLOSUM62        0.317   0.133   0.375    same    same    same
               Q=9,R=2         0.244   0.0300  0.180     n/a     n/a     n/a

  Query
  Frame  MatID  Length  Eff.Length     E     S W   T  X   E2     S2
   +0      0      244       210   0.00080  112 3  11 22  0.37    33
                                                     31  0.48    35


Statistics:

  Database:  /share/blast/go-seqdb.fasta
   Title:  go_20130330-seqdb.fasta
   Posted:  5:47:42 AM PDT Apr 1, 2013
   Created:  5:47:42 AM PDT Apr 1, 2013
   Format:  XDF-1
   # of letters in database:  169,044,731
   # of sequences in database:  368,745
   # of database sequences satisfying E:  1
  No. of states in DFA:  568 (60 KB)
  Total size of DFA:  147 KB (2091 KB)
  Time to generate neighborhood:  0.00u 0.00s 0.00t   Elapsed:  00:00:00
  No. of threads or processors used:  24
  Search cpu time:  20.35u 0.17s 20.52t   Elapsed:  00:00:01
  Total cpu time:  20.35u 0.17s 20.52t   Elapsed:  00:00:01
  Start:  Thu May  9 19:20:23 2013   End:  Thu May  9 19:20:24 2013

GO:0003674 "molecular_function" evidence=ND

GO:0006457 "protein folding" evidence=IEA

GO:0009507 "chloroplast" evidence=ISM;IDA

GO:0015031 "protein transport" evidence=IEA

GO:0009570 "chloroplast stroma" evidence=IDA

GO:0006364 "rRNA processing" evidence=RCA

GO:0006399 "tRNA metabolic process" evidence=RCA

GO:0009073 "aromatic amino acid family biosynthetic process" evidence=RCA

GO:0009658 "chloroplast organization" evidence=RCA

GO:0010207 "photosystem II assembly" evidence=RCA

GO:0016226 "iron-sulfur cluster assembly" evidence=RCA

GO:0019288 "isopentenyl diphosphate biosynthetic process, mevalonate-independent pathway" evidence=RCA

GO:0045036 "protein targeting to chloroplast" evidence=RCA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input:
	GSVIVG00034654001	SubName- Full=Chromosome chr5 scaffold_72, whole genome shotgun sequence; (218 aa)
		(Vitis vinifera)
Predicted Functional Partners:
	GSVIVG00023910001	SubName- Full=Chromosome chr6 scaffold_3, whole genome shotgun sequence; (216 aa)			•						0.506
	GSVIVG00015795001	SubName- Full=Chromosome chr2 scaffold_11, whole genome shotgun sequence; (78 aa)			•						0.506
	ndhM	SubName- Full=Chromosome chr18 scaffold_1, whole genome shotgun sequence;; NDH-1 shuttles elect [...] (208 aa)			•						0.506
	GSVIVG00003429001	SubName- Full=Chromosome undetermined scaffold_143, whole genome shotgun sequence; (182 aa)			•						0.506
	GSVIVG00000490001	SubName- Full=Chromosome chr2 scaffold_105, whole genome shotgun sequence; (84 aa)			•						0.506
	GSVIVG00020946001	SubName- Full=Chromosome chr14 scaffold_21, whole genome shotgun sequence; (200 aa)			•						0.504
	GSVIVG00006469001	SubName- Full=Chromosome undetermined scaffold_171, whole genome shotgun sequence; (155 aa)			•						0.503
	GSVIVG00002621001	SubName- Full=Chromosome undetermined scaffold_133, whole genome shotgun sequence; (295 aa)			•						0.503
	GSVIVG00035621001	SubName- Full=Chromosome undetermined scaffold_79, whole genome shotgun sequence; (96 aa)			•						0.502
	GSVIVG00023726001	SubName- Full=Chromosome chr7 scaffold_31, whole genome shotgun sequence; (204 aa)			•						0.502

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	244
pfam05697	145	pfam05697, Trigger_N, Bacterial trigger factor pro	6e-07
COG0544	441	COG0544, Tig, FKBP-type peptidyl-prolyl cis-trans	2e-05
TIGR00115	408	TIGR00115, tig, trigger factor	1e-04

>gnl|CDD|218700 pfam05697, Trigger_N, Bacterial trigger factor protein (TF)

 Score = 47.2 bits (113), Expect = 6e-07
 Identities = 36/143 (25%), Positives = 70/143 (48%), Gaps = 15/143 (10%)

Query: 92  KIVVESQDEDKIQVRVDLTGDATQRVFDKVLTNLARSAPPIPGFRREKGGKTTKVPRDFL 151
           K+ VE  +  ++++ V++  +  +   DK L  LA+    IPGFR  KG    KVPR  +
Sbjct: 2   KVTVEKLEGLEVKLTVEVPAEEVEEAVDKALKELAKKV-KIPGFR--KG----KVPRSVV 54

Query: 152 IQILGEERVTKFVVQEIVRSTLTDYTKKEGLNVKDK---KVTTTQKAEELRKSF----YP 204
            +  G+E + +  ++++++    +  K+E L    +   +    +  ++   +     YP
Sbjct: 55  KKRYGKE-IYQEALEDLLQEAYEEALKEEKLEPIGQPEIEEVELEDGKDFEFTAEFEVYP 113

Query: 205 GNEFGFSAVLELEKSEVEESETE 227
             E G    LE+EK EVE ++ +
Sbjct: 114 EVELGDYKGLEVEKPEVEVTDED 136

In the E. coli cytosol, a fraction of the newly synthesised proteins requires the activity of molecular chaperones for folding to the native state. The major chaperones implicated in this folding process are the ribosome-associated Trigger Factor (TF), and the DnaK and GroEL chaperones with their respective co-chaperones. Trigger Factor is an ATP-independent chaperone and displays chaperone and peptidyl-prolyl-cis-trans-isomerase (PPIase) activities in vitro. It is composed of at least three domains, an N-terminal domain which mediates association with the large ribosomal subunit, a central substrate binding and PPIase domain with homology to FKBP proteins, and a C-terminal domain of unknown function. The positioning of TF at the peptide exit channel, together with its ability to interact with nascent chains as short as 57 residues renders TF a prime candidate for being the first chaperone that binds to the nascent polypeptide chains. This family represents the N-terminal region of the protein. Length = 145

>gnl|CDD|223618 COG0544, Tig, FKBP-type peptidyl-prolyl cis-trans isomerase (trigger factor) [Posttranslational modification, protein turnover, chaperones]

 Score = 44.6 bits (106), Expect = 2e-05
 Identities = 42/143 (29%), Positives = 71/143 (49%), Gaps = 15/143 (10%)

Query: 92  KIVVESQDEDKIQVRVDLTGDATQRVFDKVLTNLARSAPPIPGFRREKGGKTTKVPRDFL 151
           K+ VE  +  ++++ V++  +  ++  DK L  LA+    IPGFR  KG    KVPR  +
Sbjct: 2   KVTVEKLEGLEVRLTVEVPAEEIKKALDKALKKLAKKV-KIPGFR--KG----KVPRKVI 54

Query: 152 IQILGEERVTKFVVQEIVRSTLTDYTKKEGLNVKD---KKVTTTQKAEELRKSF----YP 204
            Q  GE  V + V+ E++     +  K+EGL        ++T  +K E+   +     YP
Sbjct: 55  EQRYGEA-VRQDVLNELLPEAFEEAIKEEGLKPAGQPEIEITEFEKGEDFEFTAEVEVYP 113

Query: 205 GNEFGFSAVLELEKSEVEESETE 227
             E G    +E+EK  VE ++ +
Sbjct: 114 EVELGDYKGIEVEKPVVEVTDED 136

Length = 441

>gnl|CDD|232831 TIGR00115, tig, trigger factor

 Score = 42.5 bits (101), Expect = 1e-04
 Identities = 23/80 (28%), Positives = 42/80 (52%), Gaps = 8/80 (10%)

Query: 105 VRVDLTGDATQRVFDKVLTNLARSAPPIPGFRREKGGKTTKVPRDFLIQILGEERVTKFV 164
           + V++  +  +   DK L  LA++   IPGFR  KG    KVPR  + +  G+E V +  
Sbjct: 3   LTVEVPAEEVEEEVDKALKELAKTVK-IPGFR--KG----KVPRSVVEKRYGKE-VRQEA 54

Query: 165 VQEIVRSTLTDYTKKEGLNV 184
           + E+++   ++  K+E +  
Sbjct: 55  LNELLQEAFSEAVKEEKIRP 74

Trigger factor is a ribosome-associated molecular chaperone and is the first chaperone to interact with nascent polypeptide. Trigger factor can bind at the same time as the signal recognition particle (SRP), but is excluded by the SRP receptor (FtsY). The central domain of trigger factor has peptidyl-prolyl cis/trans isomerase activity. This protein is found in a single copy in virtually every bacterial genome [Protein fate, Protein folding and stabilization]. Length = 408

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	244
PF05697	145	Trigger_N: Bacterial trigger factor protein (TF);	99.93
COG0544	441	Tig FKBP-type peptidyl-prolyl cis-trans isomerase	99.9
PRK01490	435	tig trigger factor; Provisional	99.89
TIGR00115	408	tig trigger factor. Trigger factor is a ribosome-a	99.83

>PF05697 Trigger_N: Bacterial trigger factor protein (TF); InterPro: IPR008881 In the Escherichia coli cytosol, a fraction of the newly synthesised proteins requires the activity of molecular chaperones for folding to the native state

Probab=99.93  E-value=1.5e-25  Score=184.12  Aligned_cols=112  Identities=26%  Similarity=0.562  Sum_probs=101.5

Q ss_pred             cEEEEEecCCceEEEEEEeCHHHHHHHHHHHHHHHhhcCCCCCCCcCCCCCCCCCCcHHHHHHHhCHHHHHHHHHHHHHH
Q 026074           91 AKIVVESQDEDKIQVRVDLTGDATQRVFDKVLTNLARSAPPIPGFRREKGGKTTKVPRDFLIQILGEERVTKFVVQEIVR  170 (244)
Q Consensus        91 MkVtve~le~~~i~L~VeVp~eevq~~~dkal~klaK~akpIPGFRK~kGgk~~KVP~~VIek~yG~e~I~~eaieeLI~  170 (244)
                      |+++++..+++.+.++|+|++++++++++++|++++++++ ||||||  |    |||+++|+++||.+ |++++++++++
T Consensus         1 M~v~~~~~~~~~~~~~v~v~~~~~~~~~~~~l~~~~k~~~-ipGFRk--G----K~P~~vi~~~~g~~-i~~~~~~~~~~   72 (145)
T PF05697_consen    1 MKVTVEKIEDSKVKLEVEVPAEEVEKAYEKALKELAKKVK-IPGFRK--G----KAPRNVIEKRYGKE-IREEAIEELLQ   72 (145)
T ss_dssp             -EEEEEEESTTEEEEEEEE-HHHHHHHHHHHHHHHHTTTT-BTTS-T--T----SS-HHHHHHHHCHH-HHHHHHHHHHH
T ss_pred             CccEEEECCCcEEEEEEEECHHHHHHHHHHHHHHHHhhCC-CCCCCC--C----CCCHHHHHHHHHHH-HHHHHHHHHHH
Confidence            8999999999999999999999999999999999999999 999999  9    99999999999996 99999999999


Q ss_pred             HHHHHHHHHcCCccCCCCceeehhhhhhhhcccCCCcEEEEEEEEee
Q 026074          171 STLTDYTKKEGLNVKDKKVTTTQKAEELRKSFYPGNEFGFSAVLELE  217 (244)
Q Consensus       171 ~t~~eAvkee~L~pig~~P~i~~~~e~l~~~fe~g~~f~F~v~vEV~  217 (244)
                      .+|.+|+++++|+|+| .|.+.      ...+++|++|+|+++|++.
T Consensus        73 ~~~~~~~~~~~~~~i~-~p~i~------~~~~~~~~~~~~~~~~~~~  112 (145)
T PF05697_consen   73 EAYEEAIKEEKIKPIG-DPEIE------EKDFKEGEDFEFEVEFEVF  112 (145)
T ss_dssp             HHHHHHHHHTTS-ESS-EEEEE------EEEEETTS-EEEEEEEEE-
T ss_pred             HHHHHHHHHcCCCccc-ccccc------ccccccCCCEEEEEEEEec
Confidence            9999999999999999 99885      3578899999999999997

The major chaperones implicated in this folding process are the ribosome-associated Trigger Factor (TF), and the DnaK and GroEL chaperones with their respective co-chaperones. Trigger Factor is an ATP-independent chaperone and displays chaperone and peptidyl-prolyl-cis-trans-isomerase (PPIase) activities in vitro. It is composed of at least three domains, an N-terminal domain which mediates association with the large ribosomal subunit, a central substrate binding and PPIase domain with homology to FKBP proteins, and a C-terminal domain of unknown function. The positioning of TF at the peptide exit channel, together with its ability to interact with nascent chains as short as 57 residues renders TF a prime candidate for being the first chaperone that binds to the nascent polypeptide chains []. This group of sequences contain the ribosomal subunit association domain.; GO: 0006457 protein folding, 0015031 protein transport; PDB: 2D3O_1 1W26_A 1P9Y_A 1OMS_C 1T11_A 3GU0_A 2NSB_A 2NSC_A 3GTY_X.

>COG0544 Tig FKBP-type peptidyl-prolyl cis-trans isomerase (trigger factor) [Posttranslational modification, protein turnover, chaperones]

Probab=99.90  E-value=1.5e-23  Score=201.90  Aligned_cols=130  Identities=29%  Similarity=0.493  Sum_probs=118.7

Q ss_pred             cEEEEEecCCceEEEEEEeCHHHHHHHHHHHHHHHhhcCCCCCCCcCCCCCCCCCCcHHHHHHHhCHHHHHHHHHHHHHH
Q 026074           91 AKIVVESQDEDKIQVRVDLTGDATQRVFDKVLTNLARSAPPIPGFRREKGGKTTKVPRDFLIQILGEERVTKFVVQEIVR  170 (244)
Q Consensus        91 MkVtve~le~~~i~L~VeVp~eevq~~~dkal~klaK~akpIPGFRK~kGgk~~KVP~~VIek~yG~e~I~~eaieeLI~  170 (244)
                      |++++++++++++.++|+||++.+++.++++|++++++++ ||||||  |    |||+.||+++|| +.|++++++++|+
T Consensus         1 M~v~~e~~~~~~~~l~v~vp~~~~~~~~~~~~~~~~k~v~-IpGFRk--G----KvP~~ii~~ryg-~~v~~d~~~~ll~   72 (441)
T COG0544           1 MKVTVEKLEGLEVRLTVEVPAEEIKKALDKALKKLAKKVK-IPGFRK--G----KVPRKVIEQRYG-EAVRQDVLNELLP   72 (441)
T ss_pred             CCeeeeecCCcEEEEEEEECHHHHHHHHHHHHHHHHhhCc-CCCCCC--C----CCCHHHHHHHHh-HHHHHHHHHHHHH
Confidence            8899999999999999999999999999999999999999 999999  9    999999999999 5799999999999


Q ss_pred             HHHHHHHHHcCCccCCCCceeehhhhhhhhcccCCCcEEEEEEEEee------cCCcccccccccCCCCCc
Q 026074          171 STLTDYTKKEGLNVKDKKVTTTQKAEELRKSFYPGNEFGFSAVLELE------KSEVEESETETSSSSSSD  235 (244)
Q Consensus       171 ~t~~eAvkee~L~pig~~P~i~~~~e~l~~~fe~g~~f~F~v~vEV~------~~E~~e~~~~~~~~~~~~  235 (244)
                      ++|.+|+++++|+|++ +|.+.      ...+++|++|.|+|.|+|+      ++.+.+++..+.+.++.|
T Consensus        73 ~~~~~a~~e~~~~~~~-~p~~~------~~~~e~~~~~~f~~~~ev~Pev~l~d~~~i~v~~~~~ev~d~d  136 (441)
T COG0544          73 EAFEEAIKEEGLKPAG-QPEIE------ITEFEKGEDFEFTAEVEVYPEVELGDYKGIEVEKPVVEVTDED  136 (441)
T ss_pred             HHHHHHHHHhCcCcCC-CCCcc------cccccCCCceEEEEEEEEeeceecCccccceeecCCcccCHHH
Confidence            9999999999999999 99765      3578999999999999998      446667777777776433

>PRK01490 tig trigger factor; Provisional

Probab=99.89  E-value=1.2e-22  Score=192.47  Aligned_cols=113  Identities=25%  Similarity=0.460  Sum_probs=107.7

Q ss_pred             cEEEEEecCCceEEEEEEeCHHHHHHHHHHHHHHHhhcCCCCCCCcCCCCCCCCCCcHHHHHHHhCHHHHHHHHHHHHHH
Q 026074           91 AKIVVESQDEDKIQVRVDLTGDATQRVFDKVLTNLARSAPPIPGFRREKGGKTTKVPRDFLIQILGEERVTKFVVQEIVR  170 (244)
Q Consensus        91 MkVtve~le~~~i~L~VeVp~eevq~~~dkal~klaK~akpIPGFRK~kGgk~~KVP~~VIek~yG~e~I~~eaieeLI~  170 (244)
                      |+++++..+++++.|+|+||+++++..+++++++++++++ ||||||  |    |||++||+++||++ |++++++++|+
T Consensus         1 M~v~~~~~~~~~~~l~v~v~~~~~~~~~~~~~~~~~k~~~-ipGFRk--G----kvP~~ii~k~~g~~-i~~e~~~~li~   72 (435)
T PRK01490          1 MQVTVEKLEGLERRLTITVPAEEIEKAVDKALKKLAKTVR-IPGFRK--G----KVPRKIVEQRYGES-VRQEALNDLLP   72 (435)
T ss_pred             CcceEEEcCCcEEEEEEEEcHHHHHHHHHHHHHHHHhhCc-CCCccC--C----CCCHHHHHHHHhHH-HHHHHHHHHHH
Confidence            8999999999999999999999999999999999999999 999999  9    99999999999985 99999999999


Q ss_pred             HHHHHHHHHcCCccCCCCceeehhhhhhhhcccCCCcEEEEEEEEeec
Q 026074          171 STLTDYTKKEGLNVKDKKVTTTQKAEELRKSFYPGNEFGFSAVLELEK  218 (244)
Q Consensus       171 ~t~~eAvkee~L~pig~~P~i~~~~e~l~~~fe~g~~f~F~v~vEV~~  218 (244)
                      .+|.+|+++++|+|++ +|.+..      ..++++++|+|+++|+|.+
T Consensus        73 ~~~~~~i~~~~~~~~~-~p~i~~------~~~~~~~~~~~~~~~~v~P  113 (435)
T PRK01490         73 EAYEEAIKEEGIRPAG-QPEIEP------TEEEKGKDLEFTAEVEVYP  113 (435)
T ss_pred             HHHHHHHHHcCCCcCC-CCcccc------cccCCCCcEEEEEEeeecC
Confidence            9999999999999999 999872      4577889999999999983

>TIGR00115 tig trigger factor

Probab=99.83  E-value=4.4e-20  Score=173.52  Aligned_cols=101  Identities=26%  Similarity=0.482  Sum_probs=94.8

Q ss_pred             EEEEEEeCHHHHHHHHHHHHHHHhhcCCCCCCCcCCCCCCCCCCcHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHHHcCC
Q 026074          103 IQVRVDLTGDATQRVFDKVLTNLARSAPPIPGFRREKGGKTTKVPRDFLIQILGEERVTKFVVQEIVRSTLTDYTKKEGL  182 (244)
Q Consensus       103 i~L~VeVp~eevq~~~dkal~klaK~akpIPGFRK~kGgk~~KVP~~VIek~yG~e~I~~eaieeLI~~t~~eAvkee~L  182 (244)
                      +.|+|+||+++++..++++|++++++++ ||||||  |    |||+++|+++||+ .|+.++++++|+++|.+|+++++|
T Consensus         1 ~~l~v~v~~~~~~~~~~k~~~~~~k~~~-ipGFRk--G----KvP~~~i~k~~g~-~i~~e~~~~li~~~~~~~~~~~~~   72 (408)
T TIGR00115         1 RKLTVEVPAEEVEEEVDKALKELAKKVK-IPGFRK--G----KVPRSVVEKRYGK-EVRQEALNELLQEAFSEAVKEEKI   72 (408)
T ss_pred             CeEEEEECHHHHHHHHHHHHHHHHhhCC-CCCccC--C----CCCHHHHHHHHhH-HHHHHHHHHHHHHHHHHHHHhCCC
Confidence            3689999999999999999999999999 999999  9    9999999999998 499999999999999999999999


Q ss_pred             ccCCCCceeehhhhhhhhcccCCCcEEEEEEEEeec
Q 026074          183 NVKDKKVTTTQKAEELRKSFYPGNEFGFSAVLELEK  218 (244)
Q Consensus       183 ~pig~~P~i~~~~e~l~~~fe~g~~f~F~v~vEV~~  218 (244)
                      +|+| +|.+..      ..+.+|++|+|+++|+|.+
T Consensus        73 ~~~~-~p~~~~------~~~~~~~~~~~~~~~~v~P  101 (408)
T TIGR00115        73 RPIG-QPEIEV------KEIEDGKDLEFTAEFEVYP  101 (408)
T ss_pred             CcCC-CCcccc------ccccCCCCEEEEEEEEecC
Confidence            9999 999862      4678899999999999984

Trigger factor is a ribosome-associated molecular chaperone and is the first chaperone to interact with nascent polypeptide. Trigger factor can bind at the same time as the signal recognition particle (SRP), but is excluded by the SRP receptor (FtsY). The central domain of trigger factor has peptidyl-prolyl cis/trans isomerase activity. This protein is found in a single copy in virtually every bacterial genome.

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	244
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	2e-10
2d3o_1	112	Trigger factor, TF; ribosome, nascent chain, prote	4e-07
2nsc_A	109	Trigger factor, TF; chaperone; 2.20A {Thermotoga m	2e-04

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 59.5 bits (143), Expect = 2e-10
 Identities = 40/224 (17%), Positives = 70/224 (31%), Gaps = 63/224 (28%)

Query: 44  HFQNSRPSLYCNPL--MRRVQHVLKTVSAVDSGVEVSITEPEDLITVKDAKIVVESQDED 101
               S+P  Y N L  +  VQ+  K  +A +   ++       L+T +  ++        
Sbjct: 236 RLLKSKP--YENCLLVLLNVQNA-KAWNAFNLSCKI-------LLTTRFKQVTDFLSAAT 285

Query: 102 KIQVRVD-----LTGDATQRVFDKVLTNLARSAPPIPGFRREKGGKTTKVPRDFLIQILG 156
              + +D     LT D  + +  K L    +  P     R          P    + I+ 
Sbjct: 286 TTHISLDHHSMTLTPDEVKSLLLKYLDCRPQDLP-----REVLTTN----P--RRLSIIA 334

Query: 157 EERVTKFVVQEIVRSTLTDYTKKEGLNVKDKKVTTTQKA-------EELRKSFYPGNEFG 209
           E      +   +      D  K     V   K+TT  ++        E RK F       
Sbjct: 335 E-----SIRDGLATW---DNWKH----VNCDKLTTIIESSLNVLEPAEYRKMFD---RLS 379

Query: 210 -F-------SAVLEL-----EKSEVEESETETSSSSSSDEENDE 240
            F       + +L L      KS+V     +    S  +++  E
Sbjct: 380 VFPPSAHIPTILLSLIWFDVIKSDVMVVVNKLHKYSLVEKQPKE 423

>2d3o_1 Trigger factor, TF; ribosome, nascent chain, protein folding, SRP; 3.35A {Deinococcus radiodurans} PDB: 2aar_7 Length = 112

 Score = 46.5 bits (111), Expect = 4e-07
 Identities = 29/121 (23%), Positives = 51/121 (42%), Gaps = 15/121 (12%)

Query: 95  VESQDEDKIQVRVDLTGDATQRVFDKVLTNLARSAPPIPGFRREKGGKTTKVPRDFLIQI 154
           + S++ +K++ +V +      R +D+V   LAR    +PGFR   G    K PR  +   
Sbjct: 4   LISKEGNKVEFKVSVPAAEVNRAYDQVWAGLARDVR-VPGFR--PG----KAPRKVIENR 56

Query: 155 LGEERVTKFVVQEIVRSTLTDYTKKEGLNVKDKKVTTTQKAEELRKSFYPGNEFGFSAVL 214
           +G+  V   V   ++ +  +   ++ GLN+ D  V               G  F F+   
Sbjct: 57  VGKGYVESQVRDRLLETHYSQGLRELGLNLVDATVDPQDVQS--------GQAFEFTVKG 108

Query: 215 E 215
           E
Sbjct: 109 E 109

>2nsc_A Trigger factor, TF; chaperone; 2.20A {Thermotoga maritima} PDB: 2nsb_A Length = 109

 Score = 38.6 bits (90), Expect = 2e-04
 Identities = 17/88 (19%), Positives = 36/88 (40%), Gaps = 12/88 (13%)

Query: 92  KIVVESQDEDKIQVRVDLTGDATQRVFDKVLTNLARSAPPIPGFRREKGGKTTKVPRDFL 151
           ++    +D++++ +      +   +  DK +  L +    IPGFR  KG    ++P++ L
Sbjct: 2   EVKELERDKNRVVLEYVFGAEEIAQAEDKAVRYLNQRV-EIPGFR--KG----RIPKNVL 54

Query: 152 IQILGEERVTKFVVQEIVRSTLTDYTKK 179
              LGEE       +  +   +      
Sbjct: 55  KMKLGEE-----FQEYTLDFLMDLIPDT 77

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	244
1p9y_A	121	Trigger factor, TF; alpha-beta protein, isomerase;	99.96
2d3o_1	112	Trigger factor, TF; ribosome, nascent chain, prote	99.96
2nsc_A	109	Trigger factor, TF; chaperone; 2.20A {Thermotoga m	99.95
1t11_A	392	Trigger factor, TF; helix-turn-helix, four-helix-b	99.93
1w26_A	432	Trigger factor, TF; chaperone, protein folding, ri	99.92
3gty_X	433	Trigger factor, TF; chaperone-client complex, cell	99.81

>1p9y_A Trigger factor, TF; alpha-beta protein, isomerase; 2.15A {Escherichia coli} SCOP: d.241.2.1 PDB: 1oms_A*

Probab=99.96  E-value=2.6e-29  Score=201.83  Aligned_cols=114  Identities=24%  Similarity=0.386  Sum_probs=108.3

Q ss_pred             CcEEEEEecCCceEEEEEEeCHHHHHHHHHHHHHHHhhcCCCCCCCcCCCCCCCCCCcHHHHHHHhCHHHHHHHHHHHHH
Q 026074           90 DAKIVVESQDEDKIQVRVDLTGDATQRVFDKVLTNLARSAPPIPGFRREKGGKTTKVPRDFLIQILGEERVTKFVVQEIV  169 (244)
Q Consensus        90 ~MkVtve~le~~~i~L~VeVp~eevq~~~dkal~klaK~akpIPGFRK~kGgk~~KVP~~VIek~yG~e~I~~eaieeLI  169 (244)
                      .|+++++++++++++|+|+||+++++++++++|++++++++ ||||||  |    |||+++|+++||+ .|++++++++|
T Consensus         3 ~M~v~~e~~~~~~~~l~v~v~~~~~~~~~~~~~~~~~k~v~-ipGFRk--G----KvP~~vi~k~yG~-~v~~ea~~~~i   74 (121)
T 1p9y_A            3 HMQVSVETTQGLGRRVTITIAADSIETAVKSELVNVAKKVR-IDGLRK--G----KVPMNIVAQRYGA-SVRQDVLGDLM   74 (121)
T ss_dssp             -CEEEEEECSTTEEEEEEEECHHHHHHHHHHHHHHHHTTCC-CTTSCT--T----CSCHHHHHHHHHH-HHHHHHHHHHH
T ss_pred             cceEEEEECCCcEEEEEEEECHHHHHHHHHHHHHHHHhhCc-cCCcCC--C----CCCHHHHHHHHHH-HHHHHHHHHHH
Confidence            49999999999999999999999999999999999999999 999999  9    9999999999997 59999999999


Q ss_pred             HHHHHHHHHHcCCccCCCCceeehhhhhhhhcccCCCcEEEEEEEEeec
Q 026074          170 RSTLTDYTKKEGLNVKDKKVTTTQKAEELRKSFYPGNEFGFSAVLELEK  218 (244)
Q Consensus       170 ~~t~~eAvkee~L~pig~~P~i~~~~e~l~~~fe~g~~f~F~v~vEV~~  218 (244)
                      +++|.+|+++++|+|++ +|.++.      ..+++|++|.|+++|+|++
T Consensus        75 ~~~~~~ai~e~~l~~~~-~P~i~~------~~~~~~~~~~f~~~~ev~P  116 (121)
T 1p9y_A           75 SRNFIDAIIKEKINPAG-APTYVP------GEYKLGEDFTYSVEFEVYP  116 (121)
T ss_dssp             HHHHHHHHHHTTCCCEE-EEEEEE------CCCCSSSCEEEEEEEECCC
T ss_pred             HHHHHHHHHHcCCCCCC-CCcccc------cccCCCCCEEEEEEEEEcC
Confidence            99999999999999999 999862      4578899999999999983

>2d3o_1 Trigger factor, TF; ribosome, nascent chain, protein folding, SRP; 3.35A {Deinococcus radiodurans} PDB: 2aar_7

Probab=99.96  E-value=9.2e-30  Score=201.83  Aligned_cols=112  Identities=25%  Similarity=0.458  Sum_probs=95.8

Q ss_pred             cEEEEEecCCceEEEEEEeCHHHHHHHHHHHHHHHhhcCCCCCCCcCCCCCCCCCCcHHHHHHHhCHHHHHHHHHHHHHH
Q 026074           91 AKIVVESQDEDKIQVRVDLTGDATQRVFDKVLTNLARSAPPIPGFRREKGGKTTKVPRDFLIQILGEERVTKFVVQEIVR  170 (244)
Q Consensus        91 MkVtve~le~~~i~L~VeVp~eevq~~~dkal~klaK~akpIPGFRK~kGgk~~KVP~~VIek~yG~e~I~~eaieeLI~  170 (244)
                      |++++++ ++++++|+|+||+++++++++++|++++++++ ||||||  |    |||+++|+++||++.|++++++++|+
T Consensus         1 M~v~~e~-~~~~~~l~v~v~~~~~~~~~~~~~~~~~k~~~-ipGFRk--G----KvP~~vi~k~yG~~~v~~ea~~~~i~   72 (112)
T 2d3o_1            1 MAELISK-EGNKVEFKVSVPAAEVNRAYDQVWAGLARDVR-VPGFRP--G----KAPRKVIENRVGKGYVESQVRDRLLE   72 (112)
T ss_dssp             ----------CCEEEEECCCGGGTHHHHHHHHHHHHTTSC-BTTBCT--T----CCCSTTHHHHTTTTSSHHHHHHHHHH
T ss_pred             CceEEEc-CCcEEEEEEEECHHHHHHHHHHHHHHHHhhCC-CCCcCC--C----CCCHHHHHHHhCHHHHHHHHHHHHHH
Confidence            8899999 99999999999999999999999999999999 999999  9    99999999999955799999999999


Q ss_pred             HHHHHHHHHcCCccCCCCceeehhhhhhhhcccCCCcEEEEEEEEeec
Q 026074          171 STLTDYTKKEGLNVKDKKVTTTQKAEELRKSFYPGNEFGFSAVLELEK  218 (244)
Q Consensus       171 ~t~~eAvkee~L~pig~~P~i~~~~e~l~~~fe~g~~f~F~v~vEV~~  218 (244)
                      ++|.+|+++++|+|++ +|.++.      . +++|++|.|+++|+|++
T Consensus        73 ~~~~~ai~e~~l~~~~-~P~i~~------~-~~~~~~~~f~~~~ev~P  112 (112)
T 2d3o_1           73 THYSQGLRELGLNLVD-ATVDPQ------D-VQSGQAFEFTVKGETYP  112 (112)
T ss_dssp             HHHHHHHHHSCCCCCC-EECCCC------C-CCSSSCCCEEEEEC---
T ss_pred             HHHHHHHHHcCCCCCC-CCcccc------c-ccCCCCEEEEEEEEecC
Confidence            9999999999999999 999862      4 78899999999999874

>2nsc_A Trigger factor, TF; chaperone; 2.20A {Thermotoga maritima} PDB: 2nsb_A

Probab=99.95  E-value=2.4e-28  Score=192.90  Aligned_cols=109  Identities=18%  Similarity=0.325  Sum_probs=103.2

Q ss_pred             cEEEEEecCCceEEEEEEeCHHHHHHHHHHHHHHHhhcCCCCCCCcCCCCCCCCCCcHHHHHHHhCHHHHHHHHHHHHHH
Q 026074           91 AKIVVESQDEDKIQVRVDLTGDATQRVFDKVLTNLARSAPPIPGFRREKGGKTTKVPRDFLIQILGEERVTKFVVQEIVR  170 (244)
Q Consensus        91 MkVtve~le~~~i~L~VeVp~eevq~~~dkal~klaK~akpIPGFRK~kGgk~~KVP~~VIek~yG~e~I~~eaieeLI~  170 (244)
                      |+++++++++++++|+|+||+++++++++++|++++++++ ||||||  |    |||+++|+++||+ .|++++++++|+
T Consensus         1 M~v~~e~~~~~~~~l~v~v~~~~~~~~~~~~~~~~~k~~~-ipGFRk--G----KvP~~vi~k~yG~-~v~~ea~~~~i~   72 (109)
T 2nsc_A            1 MEVKELERDKNRVVLEYVFGAEEIAQAEDKAVRYLNQRVE-IPGFRK--G----RIPKNVLKMKLGE-EFQEYTLDFLMD   72 (109)
T ss_dssp             CEEEEEEEETTEEEEEEECCHHHHHHHHHHHHHHHHTTCC-CTTSCT--T----CCCHHHHHHHHGG-GHHHHHHHHHHT
T ss_pred             CceEEEEcCCCEEEEEEEECHHHHHHHHHHHHHHHhccCC-CCCcCC--C----CCCHHHHHHHHhH-HHHHHHHHHHHH
Confidence            8999999999999999999999999999999999999999 999999  9    9999999999997 699999999999


Q ss_pred             HHHHHHHHHcCCccCCCCceeehhhhhhhhcccCCCcEEEEEEEEeec
Q 026074          171 STLTDYTKKEGLNVKDKKVTTTQKAEELRKSFYPGNEFGFSAVLELEK  218 (244)
Q Consensus       171 ~t~~eAvkee~L~pig~~P~i~~~~e~l~~~fe~g~~f~F~v~vEV~~  218 (244)
                      + |.+|+++++|  ++ +|.++.      ..++ |++|.|+++|+|++
T Consensus        73 ~-~~~ai~e~~l--~~-~P~i~~------~~~~-~~~~~f~~~~ev~P  109 (109)
T 2nsc_A           73 L-IPDTLKDRKL--IL-SPIVTE------RELK-DVTARVVVEVHEEP  109 (109)
T ss_dssp             T-HHHHTTTSCC--SS-CCCCCC------CCCC-CCCCCCCCCCCCCC
T ss_pred             H-HHHHHHHcCc--CC-CCcccc------cccc-CCCEEEEEEEEecC
Confidence            9 9999999999  99 999862      4577 99999999999864

>1t11_A Trigger factor, TF; helix-turn-helix, four-helix-bundle, ppiase, chaperone; 2.50A {Vibrio cholerae} SCOP: a.223.1.1 d.241.2.1 d.26.1.1 PDB: 1l1p_A

Probab=99.93  E-value=2.2e-25  Score=208.98  Aligned_cols=132  Identities=20%  Similarity=0.338  Sum_probs=116.9

Q ss_pred             cCcEEEEEecCCceEEEEEEeCHHHHHHHHHHHHHHHhhcCCCCCCCcCCCCCCCCCCcHHHHHHHhCHHHHHHHHHHHH
Q 026074           89 KDAKIVVESQDEDKIQVRVDLTGDATQRVFDKVLTNLARSAPPIPGFRREKGGKTTKVPRDFLIQILGEERVTKFVVQEI  168 (244)
Q Consensus        89 ~~MkVtve~le~~~i~L~VeVp~eevq~~~dkal~klaK~akpIPGFRK~kGgk~~KVP~~VIek~yG~e~I~~eaieeL  168 (244)
                      ..|+++++++++++++|+|+||+++++++++++|++++++++ ||||||  |    |||++||+++||. .|++++++++
T Consensus         2 ~~M~v~~e~~~~~~~~l~v~v~~~~~~~~~~~~~~~~~k~~~-ipGFRk--G----KvP~~~i~k~yG~-~v~~ea~~~~   73 (392)
T 1t11_A            2 SHMQVTVETLEGLQRRLNITVPAANIEDAVAAELRNIAKNRR-FDGFRK--G----KVPMKMVAKMYGK-AVRQDVLGEV   73 (392)
T ss_dssp             -CCEEEEEECSTTEEEEEEEECHHHHHHHHHHHHHHHHTTCC-CTTSCS--S----CCCHHHHHHHHHH-HHHHHHHHHH
T ss_pred             CcceEEEEEcCCcEEEEEEEEcHHHHHHHHHHHHHHHhccCC-CCCCCC--C----CCCHHHHHHHHhH-HHHHHHHHHH
Confidence            359999999999999999999999999999999999999999 999999  9    9999999999996 6999999999


Q ss_pred             HHHHHHHHHHHcCCccCCCCceeehhhhhhhhcccCCCcEEEEEEEEeec------CCcccccccccCCCCCc
Q 026074          169 VRSTLTDYTKKEGLNVKDKKVTTTQKAEELRKSFYPGNEFGFSAVLELEK------SEVEESETETSSSSSSD  235 (244)
Q Consensus       169 I~~t~~eAvkee~L~pig~~P~i~~~~e~l~~~fe~g~~f~F~v~vEV~~------~E~~e~~~~~~~~~~~~  235 (244)
                      |+.+|.+|+++++|+|+| +|.++.      ..+++|++|.|+++|+|++      +.+.+.+....+.++.|
T Consensus        74 ~~~~~~~ai~e~~l~~~~-~P~i~~------~~~~~~~~~~f~~~~ev~Pev~l~~y~~l~v~~~~~~Vtde~  139 (392)
T 1t11_A           74 MQRHFIEAIVKEKINPAG-APTFAP------VEIGEGKDLVFTATFEVYPEVELKGLENIAVEKPAAEVTDAD  139 (392)
T ss_dssp             HHHHHHHHHHHTTCCBSS-CCEEEE------EECCTTSCEEEEEEEEBCCCCCCTTCTTCEEESSCC---CTH
T ss_pred             HHHHHHHHHHHcCCCcCC-CCCccc------cccCCCCCEEEEEEecCCCceecCCCCceEEEeCCCCcCHHH
Confidence            999999999999999999 999862      3578899999999999973      45666666666666654

>1w26_A Trigger factor, TF; chaperone, protein folding, ribosome associated protein, nascent chain, cell division, isomerase; 2.7A {Escherichia coli} SCOP: a.223.1.1 d.241.2.1 d.26.1.1 PDB: 2vrh_A 1w2b_5

Probab=99.92  E-value=5.2e-25  Score=208.54  Aligned_cols=129  Identities=24%  Similarity=0.367  Sum_probs=116.4

Q ss_pred             cEEEEEecCCceEEEEEEeCHHHHHHHHHHHHHHHhhcCCCCCCCcCCCCCCCCCCcHHHHHHHhCHHHHHHHHHHHHHH
Q 026074           91 AKIVVESQDEDKIQVRVDLTGDATQRVFDKVLTNLARSAPPIPGFRREKGGKTTKVPRDFLIQILGEERVTKFVVQEIVR  170 (244)
Q Consensus        91 MkVtve~le~~~i~L~VeVp~eevq~~~dkal~klaK~akpIPGFRK~kGgk~~KVP~~VIek~yG~e~I~~eaieeLI~  170 (244)
                      |+++++++++++++|+|+||+++++++++++|++++++++ ||||||  |    |||++||+++||. .|++++++++|+
T Consensus         1 M~v~~e~~~~~~~~l~v~v~~~~~~~~~~~~~~~~~k~~~-ipGFRk--G----KvP~~vi~~~yG~-~v~~ea~~~~~~   72 (432)
T 1w26_A            1 MQVSVETTQGLGRRVTITIAADSIETAVKSELVNVAKKVR-IDGFRK--G----KVPMNIVAQRYGA-SVRQDVLGDLMS   72 (432)
T ss_dssp             CEEECCBCSTTEEEEEEEECHHHHHHHHHHHHHHHHHHTT-CGGGCC--S----SSCHHHHHHHHCT-TTHHHHHHHHHH
T ss_pred             CceEEEEcCCcEEEEEEEEcHHHHHHHHHHHHHHHhhhCC-CCCcCC--C----CCCHHHHHHHHhH-HHHHHHHHHHHH
Confidence            8999999999999999999999999999999999999999 999999  9    9999999999997 699999999999


Q ss_pred             HHHHHHHHHcCCccCCCCceeehhhhhhhhcccCCCcEEEEEEEEeec------CCcccccccccCCCCC
Q 026074          171 STLTDYTKKEGLNVKDKKVTTTQKAEELRKSFYPGNEFGFSAVLELEK------SEVEESETETSSSSSS  234 (244)
Q Consensus       171 ~t~~eAvkee~L~pig~~P~i~~~~e~l~~~fe~g~~f~F~v~vEV~~------~E~~e~~~~~~~~~~~  234 (244)
                      ++|.+|+++++|+|+| +|.++.      ..+++|++|.|+++|+|++      +.+.+.+....+.++.
T Consensus        73 ~~~~~ai~e~~l~~~~-~P~i~~------~~~~~~~~~~f~~~~~v~Pev~l~~y~~l~v~~~~~eVtde  135 (432)
T 1w26_A           73 RNFIDAIIKEKINPAG-APTYVP------GEYKLGEDFTYSVEFEVYPEVELQGLEAIEVEKPIVEVTDA  135 (432)
T ss_dssp             HHHHHHHHHSCCCEEE-EEEEEE------CCCCTTSCEEEEEEEEECCCCCCCCTTTCBCCEEECCCCHH
T ss_pred             HHHHHHHHhcCCCCCC-CCCccc------cccCCCCcEEEEEEeccCCCeecCCCCceEEEecCCCcCHH
Confidence            9999999999999999 999862      3578899999999999973      3555565555555544

>3gty_X Trigger factor, TF; chaperone-client complex, cell cycle, cell division, chapero isomerase, rotamase, ribonucleoprotein, binding; 3.40A {Thermotoga maritima} PDB: 3gu0_A

Probab=99.81  E-value=1e-20  Score=179.36  Aligned_cols=108  Identities=18%  Similarity=0.315  Sum_probs=95.6

Q ss_pred             cEEEEEecCCceEEEEEEeCHHHHHHHHHHHHHHHhhcCCCCCCCcCCCCCCCCCCcHHHHHHHhCHHHHHHHHHHHHHH
Q 026074           91 AKIVVESQDEDKIQVRVDLTGDATQRVFDKVLTNLARSAPPIPGFRREKGGKTTKVPRDFLIQILGEERVTKFVVQEIVR  170 (244)
Q Consensus        91 MkVtve~le~~~i~L~VeVp~eevq~~~dkal~klaK~akpIPGFRK~kGgk~~KVP~~VIek~yG~e~I~~eaieeLI~  170 (244)
                      |++++++.+++.+.|+|+||+++++++++++|++++++++ ||||||  |    |||++||+++||+ .++.++++.+++
T Consensus         1 M~v~~~~~e~~~~~l~i~v~~~~~~~~~~~~~k~~~k~v~-ipGFRk--G----KvP~~vi~k~yG~-~v~~ev~~~l~~   72 (433)
T 3gty_X            1 MEVKELERDKNRVVLEYVFGAEEIAQAEDKAVRYLNQRVE-IPGFRK--G----RIPKNVLKMKLGE-EFQEYTLDFLMD   72 (433)
T ss_dssp             CEEEEEEEETTEEEEEEECCTTHHHHHHHHHHHHHHTSCC-CCC--C--C----CCCSHHHHTTSTT-HHHHHHHHHHHT
T ss_pred             CceEEEEcCCCEEEEEEEEcHHHHHHHHHHHHHHHHHhCC-CCCCCC--C----CCcHHHHHHHhhH-HHHHHHHHHHHH
Confidence            8999999999999999999999999999999999999999 999999  9    9999999999998 599999999999


Q ss_pred             HHHHHHHHHcCCccCCCCceeehhhhhhhhcccCCCcEEEEEEEEee
Q 026074          171 STLTDYTKKEGLNVKDKKVTTTQKAEELRKSFYPGNEFGFSAVLELE  217 (244)
Q Consensus       171 ~t~~eAvkee~L~pig~~P~i~~~~e~l~~~fe~g~~f~F~v~vEV~  217 (244)
                      .++ +++.++  +|++ +|.++.      ..+ .|++|.|+++|+|+
T Consensus        73 ~~~-~~~~~e--~~~~-~P~i~~------~~~-~~~~~~f~~~vev~  108 (433)
T 3gty_X           73 LIP-DTLKDR--KLIL-SPIVTE------REL-KDVTARVVVEVHEE  108 (433)
T ss_dssp             TST-TTSSSS--CBSS-CCEEEE------EEE-CSSCEEEEEEEEBC
T ss_pred             HHH-HHHHhc--CCCC-CCCcCc------ccc-cCCCEEEEEEEEec
Confidence            987 555555  6899 999863      234 36689999999997

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	244
d1p9ya_	117	Trigger factor ribosome-binding domain {Escherichi	99.96
d1t11a2	129	Trigger factor ribosome-binding domain {Vibrio cho	99.94

>d1p9ya_ d.241.2.1 (A:) Trigger factor ribosome-binding domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a+b)
fold: Ribosome binding domain-like
superfamily: Trigger factor ribosome-binding domain
family: Trigger factor ribosome-binding domain
domain: Trigger factor ribosome-binding domain
species: Escherichia coli [TaxId: 562]

Probab=99.96  E-value=1.6e-28  Score=194.17  Aligned_cols=113  Identities=24%  Similarity=0.389  Sum_probs=108.5

Q ss_pred             cEEEEEecCCceEEEEEEeCHHHHHHHHHHHHHHHhhcCCCCCCCcCCCCCCCCCCcHHHHHHHhCHHHHHHHHHHHHHH
Q 026074           91 AKIVVESQDEDKIQVRVDLTGDATQRVFDKVLTNLARSAPPIPGFRREKGGKTTKVPRDFLIQILGEERVTKFVVQEIVR  170 (244)
Q Consensus        91 MkVtve~le~~~i~L~VeVp~eevq~~~dkal~klaK~akpIPGFRK~kGgk~~KVP~~VIek~yG~e~I~~eaieeLI~  170 (244)
                      |+|+++++++++++|+|+|++++++..++++|++++++++ ||||||  |    |||+++|+++||+ +|++++++++|+
T Consensus         1 M~v~v~~~~~~~~~l~i~v~~~~v~~~~~~~~~~~~k~~~-ipGFRk--G----KvP~~vi~k~yg~-~i~~e~~~~li~   72 (117)
T d1p9ya_           1 MQVSVETTQGLGRRVTITIAADSIETAVKSELVNVAKKVR-IDGLRK--G----KVPMNIVAQRYGA-SVRQDVLGDLMS   72 (117)
T ss_dssp             CEEEEEECSTTEEEEEEEECHHHHHHHHHHHHHHHHTTCC-CTTSCT--T----CSCHHHHHHHHHH-HHHHHHHHHHHH
T ss_pred             CceEEEecCCCEEEEEEEECHHHHHHHHHHHHHHHHhcCC-CCCcCC--C----CccHHHHHHHHhH-HHHHHHHHHHHH
Confidence            8999999999999999999999999999999999999999 999999  9    9999999999998 599999999999


Q ss_pred             HHHHHHHHHcCCccCCCCceeehhhhhhhhcccCCCcEEEEEEEEeec
Q 026074          171 STLTDYTKKEGLNVKDKKVTTTQKAEELRKSFYPGNEFGFSAVLELEK  218 (244)
Q Consensus       171 ~t~~eAvkee~L~pig~~P~i~~~~e~l~~~fe~g~~f~F~v~vEV~~  218 (244)
                      ++|.+|+++++|+|++ +|.++.      ..+++|++|+|+++|++++
T Consensus        73 ~~~~~al~e~~l~~~~-~P~i~~------~~~~~~~~~~f~~~~ev~P  113 (117)
T d1p9ya_          73 RNFIDAIIKEKINPAG-APTYVP------GEYKLGEDFTYSVEFEVYP  113 (117)
T ss_dssp             HHHHHHHHHTTCCCEE-EEEEEE------CCCCSSSCEEEEEEEECCC
T ss_pred             HHHHHHHHhcccCccC-CCcccc------ccccCCCCEEEEEEEEeCC
Confidence            9999999999999999 999873      4688999999999999973

>d1t11a2 d.241.2.1 (A:1-129) Trigger factor ribosome-binding domain {Vibrio cholerae [TaxId: 666]}

class: Alpha and beta proteins (a+b)
fold: Ribosome binding domain-like
superfamily: Trigger factor ribosome-binding domain
family: Trigger factor ribosome-binding domain
domain: Trigger factor ribosome-binding domain
species: Vibrio cholerae [TaxId: 666]

Probab=99.94  E-value=2.3e-26  Score=184.19  Aligned_cols=112  Identities=21%  Similarity=0.375  Sum_probs=108.1

Q ss_pred             cEEEEEecCCceEEEEEEeCHHHHHHHHHHHHHHHhhcCCCCCCCcCCCCCCCCCCcHHHHHHHhCHHHHHHHHHHHHHH
Q 026074           91 AKIVVESQDEDKIQVRVDLTGDATQRVFDKVLTNLARSAPPIPGFRREKGGKTTKVPRDFLIQILGEERVTKFVVQEIVR  170 (244)
Q Consensus        91 MkVtve~le~~~i~L~VeVp~eevq~~~dkal~klaK~akpIPGFRK~kGgk~~KVP~~VIek~yG~e~I~~eaieeLI~  170 (244)
                      |+++++++++++++|+|+|++++++..+++++++++++++ ||||||  |    |||+++|+++||. +|+.++++++++
T Consensus         1 M~~~~~~~~~~~~~l~v~v~~~e~~~~~~~~~~~~~k~~~-ipGFRk--G----KvP~~ii~k~~~~-~i~~e~~~~~i~   72 (129)
T d1t11a2           1 MQVTVETLEGLQRRLNITVPAANIEDAVAAELRNIAKNRR-FDGFRK--G----KVPMKMVAKMYGK-AVRQDVLGEVMQ   72 (129)
T ss_dssp             CEEEEEECSTTEEEEEEEECHHHHHHHHHHHHHHHHTTCC-CTTSCS--S----CCCHHHHHHHHHH-HHHHHHHHHHHH
T ss_pred             CceEEEEcCCcEEEEEEEECHHHHHHHHHHHHHHHHHhCC-CCCCCC--C----CCcHHHHHHHhhh-hHHHHHHHHHHH
Confidence            8999999999999999999999999999999999999999 999999  9    9999999999997 699999999999


Q ss_pred             HHHHHHHHHcCCccCCCCceeehhhhhhhhcccCCCcEEEEEEEEee
Q 026074          171 STLTDYTKKEGLNVKDKKVTTTQKAEELRKSFYPGNEFGFSAVLELE  217 (244)
Q Consensus       171 ~t~~eAvkee~L~pig~~P~i~~~~e~l~~~fe~g~~f~F~v~vEV~  217 (244)
                      ++|.+|+++++|.|++ +|.++.      ..++++++|.|++.|+++
T Consensus        73 ~~~~~~l~e~~i~~~~-~p~i~~------~~~~~~~~~~~~~~~ev~  112 (129)
T d1t11a2          73 RHFIEAIVKEKINPAG-APTFAP------VEIGEGKDLVFTATFEVY  112 (129)
T ss_dssp             HHHHHHHHHTTCCBSS-CCEEEE------EECCTTSCEEEEEEEEBC
T ss_pred             HHHHHHHHhcccCccc-CCCcCc------ccccCCCcEEEEEEEEEc
Confidence            9999999999999999 999873      568899999999999997