Citrus Sinensis ID: 026079

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240----
Protein Sequence
MAGRYDSNPFDEEEVNPFSDPAVRGKSSGQSRFGGGGFFTTNSASVPPATNSRLSPLPHEPAGFNFERDAPIDIPLDTAADLKKKEKELQAKEAELRRREQDVRRKEEAAARAGIVLEEKNWPPFFPIIHHDIANEIPIHLQRLQYVAFATYLGLFLCLLWNIVAVTTAWIKGEGVKIWFLAIIYFIAGVPGAYVLWYRPLYRAFRTESAMKFGWFFLFYLLHIGFCIFASVAPPIIFKGKSLT
Secondary Structure (PSIPRED)
ccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccccccEEEcccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHcHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHcccccccccccc
Secondary Structure Prediction (SSPRO)
cccccccccccccccccccccccEccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccccccEEEccHHHHccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHccHHHHHEHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHccccEEEEccccc
Coil and Loop (DISEMBL)
magrydsnpfdeeevnpfsdpavrgkssgqsrfggggffttnsasvppatnsrlsplphepagfnferdapidipldTAADLKKKEKELQAKEAELRRREQDVRRKEEAAARAGIVLeeknwppffpiihhdianeiPIHLQRLQYVAFATYLGLFLCLLWNIVAVTTAWIKGEGVKIWFLAIIYFIAGVPGAYVLWYRPLYRAFRTESAMKFGWFFLFYLLHIGFcifasvappiifkgkslt
Flexible Loop (DISEMBL)
magrydsnpfdeeevnpfsdpaVRGKSSGQSRFGGGGFFTTNSASVPPATNSRLSPLPHEPAGFNFERDAPIDIPLDTAADLKKKEKELQAKeaelrrreqdvrrKEEAAAragivleeknwPPFFPIIHHDIANEIPIHLQRLQYVAFATYLGLFLCLLWNIVAVTTAWIKGEGVKIWFLAIIYFIAGVPGAYVLWYRPLYRAFRTESAMKFGWFFLFYLLHIGFCIFASVAPPIIFKGKSLT
Low Complexity Region (SEG)
MAGRYDSNPFDEEEVNPFSDPAVRgkssgqsrfggggffTTNSASVPPATNSRLSPLPHEPAGFNFERDAPIDIPldtaadlkkkekelqakeaelRRREQDVRRKEEAAARAGIVLEEKNWPPFFPIIHHDIANEIPIHLQRLQYVAFATYLGLFLCLLWNIVAVTTAWIKGEGVKIWFLAIIYFIAGVPGAYVLWYRPLYRAFRTESAMKFGWFFLFYLLHIGFCIFASVAPPIIFKGKSLT
Disordered region (IsUnstruct)
****************************************************************************************************************AGIVLEEKNWPPFFPIIHHDIANEIPIHLQRLQYVAFATYLGLFLCLLWNIVAVTTAWIKGEGVKIWFLAIIYFIAGVPGAYVLWYRPLYRAFRTESAMKFGWFFLFYLLHIGFCIFASVAPPIIFK*****
Disordered Region (DISOPRED)
**GRYDSNPFDEEEVNPFSD***********************************************************************************************VLEEKNWPPFFPIIHHDIANEIPIHLQRLQYVAFATYLGLFLCLLWNIVAVTTAWIKGEGVKIWFLAIIYFIAGVPGAYVLWYRPLYRAFRTESAMKFGWFFLFYLLHIGFCIFASVAPPIIFKGKS**
Disordered Region (DISEMBL)
**************VNPFSDPAVRGKSSGQSRFGGGGFFTTNSASVPPATNSRLSPLPHEPAGFNFERDAPIDIPLDTAADLKKKEKELQAKE*****************ARAGIVLEEKNWPPFFPIIHHDIANEIPIHLQRLQYVAFATYLGLFLCLLWNIVAVTTAWIKGEGVKIWFLAIIYFIAGVPGAYVLWYRPLYRAFRTESAMKFGWFFLFYLLHIGFCIFASVAPPIIFKGKSLT
Disordered Region (DISPRO)
*****DSNPFDEEEVNPFSDPAVR*********************************************APIDIPLDTAADLKKKEKELQAKEAELRRREQDVRRKEEAAARAGIVLEEKNWPPFFPIIHHDIANEIPIHLQRLQYVAFATYLGLFLCLLWNIVAVTTAWIKGEGVKIWFLAIIYFIAGVPGAYVLWYRPLYRAFRTESAMKFGWFFLFYLLHIGFCIFASVAPPIIFKGK***
Transmembrane Helix (TMHMM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHooooooo
Transmembrane Helix (HMMTOP)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHoooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHoooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHooooooHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHoooooooo
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHiiiiii
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MAGRYDSNPFDEEEVNPFSDPAVRGKSSGQSRFGGGGFFTTNSASVPPATNSRLSPLPHEPAGFNFERDAPIDIPLDTxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxAARAGIVLEEKNWPPFFPIIHHDIANEIPIHLQRLQYVAFATYLGLFLCLLWNIVAVTTAWIKGEGVKIWFLAIIYFIAGVPGAYVLWYRPLYRAFRTESAMKFGWFFLFYLLHIGFCIFASVAPPIIFKGKSLT
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	244	2.2.26 [Sep-21-2011]
A2YMP7	306	Putative secretory carrie	N/A	no	0.979	0.781	0.689	1e-100
Q8H5X5	306	Secretory carrier-associa	yes	no	0.979	0.781	0.689	1e-100
Q9M5P2	289	Secretory carrier-associa	yes	no	0.901	0.761	0.716	4e-99
Q75IC7	313	Secretory carrier-associa	no	no	0.987	0.769	0.692	5e-97
Q9ZTX0	289	Secretory carrier-associa	N/A	no	0.909	0.768	0.709	9e-97
Q9SXA5	291	Secretory carrier-associa	no	no	0.909	0.762	0.688	3e-94
Q9SKT3	282	Secretory carrier-associa	no	no	0.881	0.762	0.669	8e-91
Q7F613	286	Secretory carrier-associa	no	no	0.901	0.769	0.688	3e-89
Q60EA5	282	Secretory carrier-associa	no	no	0.885	0.765	0.647	2e-81
Q9LR68	283	Secretory carrier-associa	no	no	0.885	0.763	0.632	1e-80

>sp|A2YMP7|SCAM1_ORYSI Putative secretory carrier-associated membrane protein 1 OS=Oryza sativa subsp. indica GN=SCAMP1 PE=3 SV=1

 Score =  363 bits (932), Expect = e-100,   Method: Compositional matrix adjust.
 Identities = 169/245 (68%), Positives = 208/245 (84%), Gaps = 6/245 (2%)

Query: 1   MAGRYDSNPFDEEEVNPFSDPAVRGKSSGQSRFGGGGFFTTNSASVPP-ATNSRLSPLPH 59
           MAGRYDSNPF+E++VNPFS+ A RGK+ GQ  +GGG F+  N  +VP  ++NSRLSPLP 
Sbjct: 1   MAGRYDSNPFEEDDVNPFSEQA-RGKAGGQPSYGGGAFYMPNPRNVPSMSSNSRLSPLPP 59

Query: 60  EPAGFNFERDAPIDIPLDTAADLKKKEKELQAKEAELRRREQDVRRKEEAAARAGIVLEE 119
           EPA F     A +DIPLD++ DLK +EKELQA+EAEL +RE++++R+EEAAARAGIV+EE
Sbjct: 60  EPAAFG----ATVDIPLDSSKDLKNREKELQAREAELNKREKELKRREEAAARAGIVIEE 115

Query: 120 KNWPPFFPIIHHDIANEIPIHLQRLQYVAFATYLGLFLCLLWNIVAVTTAWIKGEGVKIW 179
           KNWPPF P+IHHDI NEIP HLQR+QYVAFA++LGL  CL WN++AVT+AW+KGEGVKIW
Sbjct: 116 KNWPPFLPLIHHDITNEIPSHLQRMQYVAFASFLGLACCLFWNVIAVTSAWVKGEGVKIW 175

Query: 180 FLAIIYFIAGVPGAYVLWYRPLYRAFRTESAMKFGWFFLFYLLHIGFCIFASVAPPIIFK 239
            LAIIYFI+GVPGAYVLWYRPLY A RT+SA+KFG FFL YL HI FC+F++VAPP++F+
Sbjct: 176 LLAIIYFISGVPGAYVLWYRPLYNAMRTDSALKFGLFFLVYLFHILFCVFSAVAPPVVFE 235

Query: 240 GKSLT 244
           GKSL 
Sbjct: 236 GKSLA 240

Probably involved in membrane trafficking.
Oryza sativa subsp. indica (taxid: 39946)

>sp|Q8H5X5|SCAM1_ORYSJ Secretory carrier-associated membrane protein 1 OS=Oryza sativa subsp. japonica GN=SCAMP1 PE=2 SV=1

 Score =  363 bits (931), Expect = e-100,   Method: Compositional matrix adjust.
 Identities = 169/245 (68%), Positives = 208/245 (84%), Gaps = 6/245 (2%)

Query: 1   MAGRYDSNPFDEEEVNPFSDPAVRGKSSGQSRFGGGGFFTTNSASVPP-ATNSRLSPLPH 59
           MAGRYDSNPF+E++VNPFS+ A RGK+ GQ  +GGG F+  N  +VP  ++NSRLSPLP 
Sbjct: 1   MAGRYDSNPFEEDDVNPFSEQA-RGKAGGQPSYGGGAFYMPNPRNVPSVSSNSRLSPLPP 59

Query: 60  EPAGFNFERDAPIDIPLDTAADLKKKEKELQAKEAELRRREQDVRRKEEAAARAGIVLEE 119
           EPA F     A +DIPLD++ DLK +EKELQA+EAEL +RE++++R+EEAAARAGIV+EE
Sbjct: 60  EPAAFG----ATVDIPLDSSKDLKNREKELQAREAELNKREKELKRREEAAARAGIVIEE 115

Query: 120 KNWPPFFPIIHHDIANEIPIHLQRLQYVAFATYLGLFLCLLWNIVAVTTAWIKGEGVKIW 179
           KNWPPF P+IHHDI NEIP HLQR+QYVAFA++LGL  CL WN++AVT+AW+KGEGVKIW
Sbjct: 116 KNWPPFLPLIHHDITNEIPSHLQRMQYVAFASFLGLACCLFWNVIAVTSAWVKGEGVKIW 175

Query: 180 FLAIIYFIAGVPGAYVLWYRPLYRAFRTESAMKFGWFFLFYLLHIGFCIFASVAPPIIFK 239
            LAIIYFI+GVPGAYVLWYRPLY A RT+SA+KFG FFL YL HI FC+F++VAPP++F+
Sbjct: 176 LLAIIYFISGVPGAYVLWYRPLYNAMRTDSALKFGLFFLVYLFHILFCVFSAVAPPVVFE 235

Query: 240 GKSLT 244
           GKSL 
Sbjct: 236 GKSLA 240

Probably involved in membrane trafficking.

Oryza sativa subsp. japonica (taxid: 39947)

>sp|Q9M5P2|SCAM3_ARATH Secretory carrier-associated membrane protein 3 OS=Arabidopsis thaliana GN=SCAMP3 PE=1 SV=1

 Score =  360 bits (925), Expect = 4e-99,   Method: Compositional matrix adjust.
 Identities = 177/247 (71%), Positives = 200/247 (80%), Gaps = 27/247 (10%)

Query: 1   MAGRYDSNPF-DEEEVNPFSDPAVRGKSSGQSRFGGGGFFTTNSASVPPATNSRLSPLPH 59
           MA RYD NPF +EEEVNPF+                      N+  VPPA+NSRLSPLP 
Sbjct: 1   MANRYDPNPFAEEEEVNPFA----------------------NARGVPPASNSRLSPLPP 38

Query: 60  EPAGFNFERDAPIDIPLDTAA--DLKKKEKELQAKEAELRRREQDVRRKEEAAARAGIVL 117
           EP GF++ R   +DIPLD A   DLKKKEKELQAKEAEL+RREQD++RKE+AAARAGIV+
Sbjct: 39  EPVGFDYGRT--VDIPLDRAGTQDLKKKEKELQAKEAELKRREQDLKRKEDAAARAGIVI 96

Query: 118 EEKNWPPFFPIIHHDIANEIPIHLQRLQYVAFATYLGLFLCLLWNIVAVTTAWIKGEGVK 177
           E KNWPPFFP+IHHDIANEIP+HLQRLQYV FATYLGL LCL WNI+AVTTAWIKGEGV 
Sbjct: 97  EVKNWPPFFPLIHHDIANEIPVHLQRLQYVTFATYLGLVLCLFWNIIAVTTAWIKGEGVT 156

Query: 178 IWFLAIIYFIAGVPGAYVLWYRPLYRAFRTESAMKFGWFFLFYLLHIGFCIFASVAPPII 237
           IW LA+IYFIAGVPG YVLWYRPLYRAFRT+SA+ FGWFFLFY+LHI FC+FA+VAPP++
Sbjct: 157 IWLLALIYFIAGVPGGYVLWYRPLYRAFRTDSALSFGWFFLFYMLHIAFCVFAAVAPPVV 216

Query: 238 FKGKSLT 244
           FKGKSL 
Sbjct: 217 FKGKSLA 223

Probably involved in membrane trafficking.

Arabidopsis thaliana (taxid: 3702)

>sp|Q75IC7|SCAM4_ORYSJ Secretory carrier-associated membrane protein 4 OS=Oryza sativa subsp. japonica GN=SCAMP4 PE=2 SV=1

 Score =  353 bits (907), Expect = 5e-97,   Method: Compositional matrix adjust.
 Identities = 173/250 (69%), Positives = 205/250 (82%), Gaps = 9/250 (3%)

Query: 1   MAGR--YDSNPFDE---EEVNPFSDPAVRGKSSGQSRFGGGGFFTTNS-ASVPPATNSRL 54
           MAGR  YD NPF+E   +EVNPF+D A +G S+GQS + GG F+TT S  S PPAT+  L
Sbjct: 1   MAGRSRYD-NPFEEGGGDEVNPFADKASKGGSAGQSSYSGGAFYTTQSRPSAPPATH--L 57

Query: 55  SPLPHEPAGFNFERDAPIDIPLDTAADLKKKEKELQAKEAELRRREQDVRRKEEAAARAG 114
           SPLP EPA F  +   P+DIP+DT+ D+K +EKEL AKEAEL RRE++++R+EEAAARAG
Sbjct: 58  SPLPPEPADFYNDFSTPVDIPMDTSKDMKTREKELLAKEAELNRREKEIKRREEAAARAG 117

Query: 115 IVLEEKNWPPFFPIIHHDIANEIPIHLQRLQYVAFATYLGLFLCLLWNIVAVTTAWIKGE 174
           IVLE+KNWPPFFPIIH+DI NEIP+HLQR QYVAFA+ LGL LCL WNI+ VT AWIKGE
Sbjct: 118 IVLEDKNWPPFFPIIHNDIGNEIPVHLQRTQYVAFASLLGLVLCLFWNIICVTAAWIKGE 177

Query: 175 GVKIWFLAIIYFIAGVPGAYVLWYRPLYRAFRTESAMKFGWFFLFYLLHIGFCIFASVAP 234
           G KIWFLA+IYFI G PGAY LWYRPLYRA R ESA+KFGWFFLFYL+HI FC++A+V+P
Sbjct: 178 GPKIWFLAVIYFILGCPGAYYLWYRPLYRAMRNESALKFGWFFLFYLVHIAFCVYAAVSP 237

Query: 235 PIIFKGKSLT 244
            I+F GKSLT
Sbjct: 238 SILFVGKSLT 247

Probably involved in membrane trafficking.

Oryza sativa subsp. japonica (taxid: 39947)

>sp|Q9ZTX0|SCAM_PEA Secretory carrier-associated membrane protein OS=Pisum sativum GN=PSAM2 PE=2 SV=1

 Score =  353 bits (905), Expect = 9e-97,   Method: Compositional matrix adjust.
 Identities = 173/244 (70%), Positives = 195/244 (79%), Gaps = 22/244 (9%)

Query: 1   MAGRYDSNPFDEEEVNPFSDPAVRGKSSGQSRFGGGGFFTTNSASVPPATNSRLSPLPHE 60
           MAGRYD NPFDEE+VNPFS+P                       S   ATNSR +PL  +
Sbjct: 1   MAGRYDPNPFDEEQVNPFSNPR----------------------SAASATNSRPAPLNPD 38

Query: 61  PAGFNFERDAPIDIPLDTAADLKKKEKELQAKEAELRRREQDVRRKEEAAARAGIVLEEK 120
            A +N+     +DIPLDT+ D KKKE++LQAKEAELR+REQ+VRRKEEA ARAGIV+EEK
Sbjct: 39  RADYNYGFGPTVDIPLDTSTDGKKKERDLQAKEAELRKREQEVRRKEEAIARAGIVIEEK 98

Query: 121 NWPPFFPIIHHDIANEIPIHLQRLQYVAFATYLGLFLCLLWNIVAVTTAWIKGEGVKIWF 180
           NWPPFFPIIHHDI NEIPIHL+ LQYVAF + LGL LCL WN+V+VT AWIKGEGVKIWF
Sbjct: 99  NWPPFFPIIHHDITNEIPIHLRTLQYVAFFSLLGLVLCLTWNVVSVTAAWIKGEGVKIWF 158

Query: 181 LAIIYFIAGVPGAYVLWYRPLYRAFRTESAMKFGWFFLFYLLHIGFCIFASVAPPIIFKG 240
           LAIIYFIAGVPGAY LWYRPLYRAFRT+SA+KFGWFF+FYLLHIGFCI A+VAPPI+FKG
Sbjct: 159 LAIIYFIAGVPGAYALWYRPLYRAFRTDSAIKFGWFFMFYLLHIGFCILAAVAPPIVFKG 218

Query: 241 KSLT 244
           KSLT
Sbjct: 219 KSLT 222

Probably involved in membrane trafficking.

Pisum sativum (taxid: 3888)

>sp|Q9SXA5|SCAM5_ARATH Secretory carrier-associated membrane protein 5 OS=Arabidopsis thaliana GN=SCAMP5 PE=2 SV=2

 Score =  344 bits (883), Expect = 3e-94,   Method: Compositional matrix adjust.
 Identities = 170/247 (68%), Positives = 194/247 (78%), Gaps = 25/247 (10%)

Query: 1   MAGRYDSNPFDEE-EVNPFSDPAVRGKSSGQSRFGGGGFFTTNSASVPPATNSRLSPLPH 59
           M GRYD N FDE+ EVNPF++P                       SVP A+NSRLSPLP 
Sbjct: 1   MGGRYDRNTFDEQDEVNPFANPG----------------------SVPAASNSRLSPLPP 38

Query: 60  EPAGFNFER--DAPIDIPLDTAADLKKKEKELQAKEAELRRREQDVRRKEEAAARAGIVL 117
           EPAGF + R  D P+D P   A DLKKKEKELQAKEA+LRRREQD++RK++AAARAGIV+
Sbjct: 39  EPAGFGYGRTVDIPLDRPGSGAQDLKKKEKELQAKEADLRRREQDLKRKQDAAARAGIVI 98

Query: 118 EEKNWPPFFPIIHHDIANEIPIHLQRLQYVAFATYLGLFLCLLWNIVAVTTAWIKGEGVK 177
           E KNWP FFP+IHHDIANEI + LQRLQY+AFATYLGL L L WNI+AVTTAWIKGEGV 
Sbjct: 99  EAKNWPTFFPLIHHDIANEILVRLQRLQYIAFATYLGLVLALFWNIIAVTTAWIKGEGVT 158

Query: 178 IWFLAIIYFIAGVPGAYVLWYRPLYRAFRTESAMKFGWFFLFYLLHIGFCIFASVAPPII 237
           IW LA+IYFI+GVPG YVLWYRPLYRAFR++SA  FGWFFLFY+LHI FC+FA+VAPPI+
Sbjct: 159 IWLLAVIYFISGVPGGYVLWYRPLYRAFRSDSAFNFGWFFLFYMLHILFCLFAAVAPPIV 218

Query: 238 FKGKSLT 244
           FKGKSL 
Sbjct: 219 FKGKSLA 225

Probably involved in membrane trafficking.

Arabidopsis thaliana (taxid: 3702)

>sp|Q9SKT3|SCAM1_ARATH Secretory carrier-associated membrane protein 1 OS=Arabidopsis thaliana GN=SCAMP1 PE=1 SV=1

 Score =  333 bits (853), Expect = 8e-91,   Method: Compositional matrix adjust.
 Identities = 162/242 (66%), Positives = 191/242 (78%), Gaps = 27/242 (11%)

Query: 3   GRYDSNPFDEEEVNPFSDPAVRGKSSGQSRFGGGGFFTTNSASVPPATNSRLSPLPHEPA 62
            RY S+ FD+ E+NPF++P                       SVP AT S+LSPLP EP 
Sbjct: 2   SRYQSHSFDDGEINPFANPT----------------------SVPAAT-SKLSPLPPEP- 37

Query: 63  GFNFERDAPIDIPLDTAADLKKKEKELQAKEAELRRREQDVRRKEEAAARAGIVLEEKNW 122
              ++R A +DIPLD+  DLK KEKEL+ KEAEL+RREQ+++RKE+A A+AGIV+EEKNW
Sbjct: 38  ---YDRGATMDIPLDSGKDLKAKEKELREKEAELKRREQEIKRKEDAIAQAGIVIEEKNW 94

Query: 123 PPFFPIIHHDIANEIPIHLQRLQYVAFATYLGLFLCLLWNIVAVTTAWIKGEGVKIWFLA 182
           PPFFP+IHHDI+NEIPIHLQR+QYVAF + LGL +CLLWNIVAVTTAWIKGEG  IWFLA
Sbjct: 95  PPFFPLIHHDISNEIPIHLQRIQYVAFTSMLGLVVCLLWNIVAVTTAWIKGEGPTIWFLA 154

Query: 183 IIYFIAGVPGAYVLWYRPLYRAFRTESAMKFGWFFLFYLLHIGFCIFASVAPPIIFKGKS 242
           IIYFI+GVPGAYV+WYRPLYRA RT+SA+KFGWFF  YL HI FC+FA+VAPPIIFKGKS
Sbjct: 155 IIYFISGVPGAYVMWYRPLYRAMRTDSALKFGWFFFTYLFHIAFCVFAAVAPPIIFKGKS 214

Query: 243 LT 244
           LT
Sbjct: 215 LT 216

Probably involved in membrane trafficking.

Arabidopsis thaliana (taxid: 3702)

>sp|Q7F613|SCAM2_ORYSJ Secretory carrier-associated membrane protein 2 OS=Oryza sativa subsp. japonica GN=SCAMP2 PE=2 SV=1

 Score =  327 bits (839), Expect = 3e-89,   Method: Compositional matrix adjust.
 Identities = 168/244 (68%), Positives = 195/244 (79%), Gaps = 24/244 (9%)

Query: 1   MAGRYDSNPFDEEEVNPFSDPAVRGKSSGQSRFGGGGFFTTNSASVPPATNSRLSPLPHE 60
           MAGRYD NPFDE++VNPF+                GG       SVPPA+NSR+ PLPHE
Sbjct: 1   MAGRYDRNPFDEDDVNPFA----------------GG-------SVPPASNSRMPPLPHE 37

Query: 61  PAGFNFERDAPIDIPLDTAADLKKKEKELQAKEAELRRREQDVRRKEEAAARAGIVLEEK 120
           P GF  +R A +DIPLD+  D+KKKEKELQAKEAEL +RE ++RR+EEAA+RAGIV+EEK
Sbjct: 38  P-GFYNDRGATVDIPLDSTKDMKKKEKELQAKEAELNKRESELRRREEAASRAGIVIEEK 96

Query: 121 NWPPFFPIIHHDIANEIPIHLQRLQYVAFATYLGLFLCLLWNIVAVTTAWIKGEGVKIWF 180
           NWPPFFPIIHHDI+NEIPIHLQR+QY+AF++ LGL  CL WNI+A T AWIKG GV IW 
Sbjct: 97  NWPPFFPIIHHDISNEIPIHLQRMQYLAFSSLLGLAACLFWNIIATTAAWIKGAGVMIWL 156

Query: 181 LAIIYFIAGVPGAYVLWYRPLYRAFRTESAMKFGWFFLFYLLHIGFCIFASVAPPIIFKG 240
           LAIIYFI+GVPGAYVLWYRPLY A RTESA+KFGWFFLFYL+HI FCI+++VAPP  FKG
Sbjct: 157 LAIIYFISGVPGAYVLWYRPLYNAMRTESALKFGWFFLFYLIHILFCIWSAVAPPFPFKG 216

Query: 241 KSLT 244
           KSL 
Sbjct: 217 KSLA 220

Probably involved in membrane trafficking.

Oryza sativa subsp. japonica (taxid: 39947)

>sp|Q60EA5|SCAM3_ORYSJ Secretory carrier-associated membrane protein 3 OS=Oryza sativa subsp. japonica GN=SCAMP3 PE=2 SV=1

 Score =  302 bits (773), Expect = 2e-81,   Method: Compositional matrix adjust.
 Identities = 158/244 (64%), Positives = 192/244 (78%), Gaps = 28/244 (11%)

Query: 1   MAGRYDSNPFDEEEVNPFSDPAVRGKSSGQSRFGGGGFFTTNSASVPPATNSRLSPLPHE 60
           MAG++  N F++++VNPF+                GG       SVPPA NSRL PL HE
Sbjct: 1   MAGKHGRNGFEDDDVNPFA----------------GG-------SVPPANNSRLPPLSHE 37

Query: 61  PAGFNFERDAPIDIPLDTAADLKKKEKELQAKEAELRRREQDVRRKEEAAARAGIVLEEK 120
           PA F       +DIPLD++ DLKKKEKELQA EAEL +RE++++RKEEAAA+AGIV+E+K
Sbjct: 38  PADFY-----NVDIPLDSSKDLKKKEKELQAMEAELNKRERELKRKEEAAAQAGIVIEDK 92

Query: 121 NWPPFFPIIHHDIANEIPIHLQRLQYVAFATYLGLFLCLLWNIVAVTTAWIKGEGVKIWF 180
           NWPPFFP+IHH+I+NEIPIHLQR+QY+AF+++LGL  CL WNI+A TTAW+KGEGV IW 
Sbjct: 93  NWPPFFPLIHHNISNEIPIHLQRMQYLAFSSFLGLAACLFWNIIATTTAWVKGEGVIIWL 152

Query: 181 LAIIYFIAGVPGAYVLWYRPLYRAFRTESAMKFGWFFLFYLLHIGFCIFASVAPPIIFKG 240
           LAIIYFI+GVPGAYVLWYRPLY A RTESA+KFGWFFLFYL+HI FC++A+VAPP  FKG
Sbjct: 153 LAIIYFISGVPGAYVLWYRPLYNAMRTESALKFGWFFLFYLIHIIFCVWAAVAPPFPFKG 212

Query: 241 KSLT 244
           KSL 
Sbjct: 213 KSLA 216

Probably involved in membrane trafficking.

Oryza sativa subsp. japonica (taxid: 39947)

>sp|Q9LR68|SCAM2_ARATH Secretory carrier-associated membrane protein 2 OS=Arabidopsis thaliana GN=SCAMP2 PE=2 SV=1

 Score =  299 bits (766), Expect = 1e-80,   Method: Compositional matrix adjust.
 Identities = 153/242 (63%), Positives = 183/242 (75%), Gaps = 26/242 (10%)

Query: 3   GRYDSNPFDEEEVNPFSDPAVRGKSSGQSRFGGGGFFTTNSASVPPATNSRLSPLPHEPA 62
            R+D NPF +EE+NPF+                      N  SVPPA+NS L PLP EP 
Sbjct: 2   ARHDPNPFADEEINPFA----------------------NHTSVPPASNSYLKPLPPEP- 38

Query: 63  GFNFERDAPIDIPLDTAADLKKKEKELQAKEAELRRREQDVRRKEEAAARAGIVLEEKNW 122
              ++R A +DIPLD+  DL+ KE ELQAKE EL+R+EQ+++R+E+A AR G+V+EEKNW
Sbjct: 39  ---YDRGATVDIPLDSGNDLRAKEMELQAKENELKRKEQELKRREDAIARTGVVIEEKNW 95

Query: 123 PPFFPIIHHDIANEIPIHLQRLQYVAFATYLGLFLCLLWNIVAVTTAWIKGEGVKIWFLA 182
           P FFP+IHHDI NEIPIHLQ++QYVAF T LGL  CLLWNIVAVT AWIKGEG  IW L+
Sbjct: 96  PEFFPLIHHDIPNEIPIHLQKIQYVAFTTLLGLVGCLLWNIVAVTVAWIKGEGPTIWLLS 155

Query: 183 IIYFIAGVPGAYVLWYRPLYRAFRTESAMKFGWFFLFYLLHIGFCIFASVAPPIIFKGKS 242
           IIYF+AGVPGAYVLWYRPLYRA RT+SA+KFG FF FY+ HI FC FA+VAPP+IF+GKS
Sbjct: 156 IIYFLAGVPGAYVLWYRPLYRATRTDSALKFGAFFFFYVFHIAFCGFAAVAPPVIFQGKS 215

Query: 243 LT 244
           LT
Sbjct: 216 LT 217

Probably involved in membrane trafficking.

Arabidopsis thaliana (taxid: 3702)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	244
255634598	310	unknown [Glycine max]	1.0	0.787	0.827	1e-118
356555064	310	PREDICTED: putative secretory carrier-as	1.0	0.787	0.831	1e-117
217072518	311	unknown [Medicago truncatula]	1.0	0.784	0.808	1e-116
356549393	310	PREDICTED: LOW QUALITY PROTEIN: putative	1.0	0.787	0.815	1e-114
255560808	308	secretory carrier membrane protein, puta	0.987	0.782	0.804	1e-114
192910838	310	secretory carrier membrane protein [Elae	1.0	0.787	0.815	1e-114
363808380	298	uncharacterized protein LOC100815455 [Gl	0.909	0.744	0.766	1e-104
259490150	305	SC3 protein [Zea mays] gi|195624852|gb|A	0.979	0.783	0.709	1e-102
224124600	304	predicted protein [Populus trichocarpa]	0.967	0.776	0.763	1e-102
357446395	289	Secretory carrier-associated membrane pr	0.909	0.768	0.737	1e-100

>gi|255634598|gb|ACU17661.1| unknown [Glycine max]

 Score =  428 bits (1101), Expect = e-118,   Method: Compositional matrix adjust.
 Identities = 202/244 (82%), Positives = 219/244 (89%)

Query: 1   MAGRYDSNPFDEEEVNPFSDPAVRGKSSGQSRFGGGGFFTTNSASVPPATNSRLSPLPHE 60
           MAGRYDSNPFDEEEVNPFSDP+VRGK+S QS F GG F+TTN  SVP ATNSRL PL  E
Sbjct: 1   MAGRYDSNPFDEEEVNPFSDPSVRGKTSSQSNFSGGAFYTTNPGSVPAATNSRLPPLKPE 60

Query: 61  PAGFNFERDAPIDIPLDTAADLKKKEKELQAKEAELRRREQDVRRKEEAAARAGIVLEEK 120
           P  +N+   A +DIPLD++ DLKKKEKELQAKE ELR+REQ+VRRKEEAA+RAGIVLEEK
Sbjct: 61  PVDYNYGFGATVDIPLDSSMDLKKKEKELQAKETELRKREQEVRRKEEAASRAGIVLEEK 120

Query: 121 NWPPFFPIIHHDIANEIPIHLQRLQYVAFATYLGLFLCLLWNIVAVTTAWIKGEGVKIWF 180
           NWPPFFPIIHHDIANEIPIHLQ+LQYVAF T LGL LCL WN++AVT AWIKGEGVKIWF
Sbjct: 121 NWPPFFPIIHHDIANEIPIHLQKLQYVAFTTLLGLVLCLFWNVIAVTAAWIKGEGVKIWF 180

Query: 181 LAIIYFIAGVPGAYVLWYRPLYRAFRTESAMKFGWFFLFYLLHIGFCIFASVAPPIIFKG 240
           LAIIYFIAGVPGAYVLWYRPLYRAFR ESA+KFGWFFLFYLLHIGFCI A+VAPPI+FKG
Sbjct: 181 LAIIYFIAGVPGAYVLWYRPLYRAFRNESALKFGWFFLFYLLHIGFCILAAVAPPIVFKG 240

Query: 241 KSLT 244
           KSLT
Sbjct: 241 KSLT 244

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356555064|ref|XP_003545859.1| PREDICTED: putative secretory carrier-associated membrane protein 1-like [Glycine max]

 Score =  426 bits (1096), Expect = e-117,   Method: Compositional matrix adjust.
 Identities = 203/244 (83%), Positives = 221/244 (90%)

Query: 1   MAGRYDSNPFDEEEVNPFSDPAVRGKSSGQSRFGGGGFFTTNSASVPPATNSRLSPLPHE 60
           MA RYDSNPFDEEEVNPFS+PAVRGK+S QS + GG F+TTN  SV PATNSRLSPL  E
Sbjct: 1   MAHRYDSNPFDEEEVNPFSEPAVRGKTSSQSSYSGGAFYTTNPGSVAPATNSRLSPLNPE 60

Query: 61  PAGFNFERDAPIDIPLDTAADLKKKEKELQAKEAELRRREQDVRRKEEAAARAGIVLEEK 120
           PA +N+   A +DIPLD + DLKKKEKELQAKEAELR+REQ+VRRKEEAAARAGIVLEEK
Sbjct: 61  PADYNYGFGATVDIPLDPSTDLKKKEKELQAKEAELRKREQEVRRKEEAAARAGIVLEEK 120

Query: 121 NWPPFFPIIHHDIANEIPIHLQRLQYVAFATYLGLFLCLLWNIVAVTTAWIKGEGVKIWF 180
           NWPPFFPIIHHDIANEIPIHLQRLQYVAF + LGL LCL WNIVAVT+AWIKGEGVKIWF
Sbjct: 121 NWPPFFPIIHHDIANEIPIHLQRLQYVAFTSLLGLALCLTWNIVAVTSAWIKGEGVKIWF 180

Query: 181 LAIIYFIAGVPGAYVLWYRPLYRAFRTESAMKFGWFFLFYLLHIGFCIFASVAPPIIFKG 240
           LAIIYFIAG+PGAYVLWYRPLYRAFRT+SA+ FGWFFLFYLLH+GFCI A+VAPPI+FKG
Sbjct: 181 LAIIYFIAGIPGAYVLWYRPLYRAFRTDSALNFGWFFLFYLLHLGFCILAAVAPPIVFKG 240

Query: 241 KSLT 244
           KSLT
Sbjct: 241 KSLT 244

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|217072518|gb|ACJ84619.1| unknown [Medicago truncatula]

 Score =  424 bits (1090), Expect = e-116,   Method: Compositional matrix adjust.
 Identities = 198/245 (80%), Positives = 221/245 (90%), Gaps = 1/245 (0%)

Query: 1   MAGRYDSNPFDEEEVNPFSDPAVRGKSSGQSRFGGGGFFTTNSASVPPATNSRLSPLPHE 60
           MAGRY+SNPFDEEEVNPFS+PA +GK+S QS + GG F+TTN  SVPPA NSRLSPL  E
Sbjct: 1   MAGRYESNPFDEEEVNPFSEPAAKGKTSSQSNYSGGAFYTTNPGSVPPAKNSRLSPLEPE 60

Query: 61  PAGFN-FERDAPIDIPLDTAADLKKKEKELQAKEAELRRREQDVRRKEEAAARAGIVLEE 119
           PA +N +   A +DIPLDT+ DLKK+EKELQ+KEAELRRREQ+VRRKEEAAARAGIVLEE
Sbjct: 61  PADYNNYGFGATVDIPLDTSTDLKKREKELQSKEAELRRREQEVRRKEEAAARAGIVLEE 120

Query: 120 KNWPPFFPIIHHDIANEIPIHLQRLQYVAFATYLGLFLCLLWNIVAVTTAWIKGEGVKIW 179
           KNWPPFFPIIHHDIANEIP+HLQ+LQYVAF TYLGL  CLLWN++AVT AWIKGEGVKIW
Sbjct: 121 KNWPPFFPIIHHDIANEIPVHLQKLQYVAFTTYLGLVACLLWNVIAVTAAWIKGEGVKIW 180

Query: 180 FLAIIYFIAGVPGAYVLWYRPLYRAFRTESAMKFGWFFLFYLLHIGFCIFASVAPPIIFK 239
           FLAIIYFI+GVPGAYVLWYRPLYR FRTESA+KFGWFF+ YL+HIGFCI A+VAPPI+FK
Sbjct: 181 FLAIIYFISGVPGAYVLWYRPLYRVFRTESALKFGWFFMLYLVHIGFCILAAVAPPIVFK 240

Query: 240 GKSLT 244
           GKSLT
Sbjct: 241 GKSLT 245

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356549393|ref|XP_003543078.1| PREDICTED: LOW QUALITY PROTEIN: putative secretory carrier-associated membrane protein 1-like [Glycine max]

 Score =  418 bits (1074), Expect = e-114,   Method: Compositional matrix adjust.
 Identities = 199/244 (81%), Positives = 218/244 (89%)

Query: 1   MAGRYDSNPFDEEEVNPFSDPAVRGKSSGQSRFGGGGFFTTNSASVPPATNSRLSPLPHE 60
           MA RYDSNPFDEEEVNPFS+PAVRGK+S QS + GG F+TTN  SV PATNSRLSPL  E
Sbjct: 1   MAHRYDSNPFDEEEVNPFSEPAVRGKTSSQSSYSGGAFYTTNPGSVAPATNSRLSPLNPE 60

Query: 61  PAGFNFERDAPIDIPLDTAADLKKKEKELQAKEAELRRREQDVRRKEEAAARAGIVLEEK 120
           PA +N+   A +DI LD + DLKKKEKELQAKE ELR+REQ+VRRKEEAAARAGIVLEEK
Sbjct: 61  PADYNYGFGATVDIRLDPSMDLKKKEKELQAKENELRKREQEVRRKEEAAARAGIVLEEK 120

Query: 121 NWPPFFPIIHHDIANEIPIHLQRLQYVAFATYLGLFLCLLWNIVAVTTAWIKGEGVKIWF 180
           NWPPFFPIIHHDIANEIPIHLQRLQYVAF + LG  LC+ WNIVAVT+AWIKGEGVKIWF
Sbjct: 121 NWPPFFPIIHHDIANEIPIHLQRLQYVAFTSLLGFALCITWNIVAVTSAWIKGEGVKIWF 180

Query: 181 LAIIYFIAGVPGAYVLWYRPLYRAFRTESAMKFGWFFLFYLLHIGFCIFASVAPPIIFKG 240
           LAIIYFIAG+PGAYVLWYRPLYRAFRT+SA+ FGWFFLFYLLH+GFCI A+VAPPI+FKG
Sbjct: 181 LAIIYFIAGIPGAYVLWYRPLYRAFRTDSALNFGWFFLFYLLHLGFCILAAVAPPIVFKG 240

Query: 241 KSLT 244
           KSLT
Sbjct: 241 KSLT 244

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255560808|ref|XP_002521417.1| secretory carrier membrane protein, putative [Ricinus communis] gi|223539316|gb|EEF40907.1| secretory carrier membrane protein, putative [Ricinus communis]

 Score =  416 bits (1070), Expect = e-114,   Method: Compositional matrix adjust.
 Identities = 197/245 (80%), Positives = 220/245 (89%), Gaps = 4/245 (1%)

Query: 1   MAGRY-DSNPFDEEEVNPFSDPAVRGKSSGQSRFGGGGFFTTNSASVPPATNSRLSPLPH 59
           MAGR+ D NPFDEEEVNPFSDP VRGK+S Q +F GG F+T   AS PP +NSRLSPLP 
Sbjct: 1   MAGRHNDPNPFDEEEVNPFSDPVVRGKASSQQKFSGGAFYT---ASAPPPSNSRLSPLPP 57

Query: 60  EPAGFNFERDAPIDIPLDTAADLKKKEKELQAKEAELRRREQDVRRKEEAAARAGIVLEE 119
           EPA F ++  A +DIP+D+A DL+KKEKELQAKEAELRRREQDV+R+E+AAARAGIVLEE
Sbjct: 58  EPADFGYDHGATVDIPIDSATDLRKKEKELQAKEAELRRREQDVKRREDAAARAGIVLEE 117

Query: 120 KNWPPFFPIIHHDIANEIPIHLQRLQYVAFATYLGLFLCLLWNIVAVTTAWIKGEGVKIW 179
           KNWPPFFPIIHHDIANEIPIHLQR+QYVAF T+LGL LCL WNI+AVTTAWIKGEGVKIW
Sbjct: 118 KNWPPFFPIIHHDIANEIPIHLQRIQYVAFTTFLGLVLCLFWNIIAVTTAWIKGEGVKIW 177

Query: 180 FLAIIYFIAGVPGAYVLWYRPLYRAFRTESAMKFGWFFLFYLLHIGFCIFASVAPPIIFK 239
           FLA+IYFIAGVPGAY+LWYRPLYRAFR ESA+KFGWFFLFYL+H+GFCI A+VAPPIIFK
Sbjct: 178 FLAVIYFIAGVPGAYILWYRPLYRAFRNESALKFGWFFLFYLVHLGFCILAAVAPPIIFK 237

Query: 240 GKSLT 244
           GKS T
Sbjct: 238 GKSFT 242

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|192910838|gb|ACF06527.1| secretory carrier membrane protein [Elaeis guineensis]

 Score =  416 bits (1068), Expect = e-114,   Method: Compositional matrix adjust.
 Identities = 199/244 (81%), Positives = 220/244 (90%)

Query: 1   MAGRYDSNPFDEEEVNPFSDPAVRGKSSGQSRFGGGGFFTTNSASVPPATNSRLSPLPHE 60
           MAGRYDSNPFDEEEVNPF+DPA RGK++GQS +GGG F+TT   SVPPA NSRLSPLP E
Sbjct: 1   MAGRYDSNPFDEEEVNPFADPAGRGKAAGQSSYGGGPFYTTRPGSVPPALNSRLSPLPPE 60

Query: 61  PAGFNFERDAPIDIPLDTAADLKKKEKELQAKEAELRRREQDVRRKEEAAARAGIVLEEK 120
           PA F  +R A +DIPLDTA DLKKKE+ELQAKEAEL +RE++++R EEAA+RAGIV+EEK
Sbjct: 61  PADFYNDRSATVDIPLDTAKDLKKKERELQAKEAELNKREKELKRLEEAASRAGIVIEEK 120

Query: 121 NWPPFFPIIHHDIANEIPIHLQRLQYVAFATYLGLFLCLLWNIVAVTTAWIKGEGVKIWF 180
           NWPPFFPIIHHDIANEIPIHLQRLQY AFA+ LGL  CLLWN VAVT AWIKGEGVKIWF
Sbjct: 121 NWPPFFPIIHHDIANEIPIHLQRLQYFAFASLLGLTACLLWNFVAVTVAWIKGEGVKIWF 180

Query: 181 LAIIYFIAGVPGAYVLWYRPLYRAFRTESAMKFGWFFLFYLLHIGFCIFASVAPPIIFKG 240
           LAIIYFI+GVPGAYVLWYRPLYRA RTESA+KFG FFLFYLLHIGFCI+++VAPPIIFKG
Sbjct: 181 LAIIYFISGVPGAYVLWYRPLYRAMRTESALKFGRFFLFYLLHIGFCIYSAVAPPIIFKG 240

Query: 241 KSLT 244
           KSLT
Sbjct: 241 KSLT 244

Source: Elaeis guineensis

Species: Elaeis guineensis

Genus: Elaeis

Family: Arecaceae

Order: Arecales

Class: Liliopsida

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|363808380|ref|NP_001242258.1| uncharacterized protein LOC100815455 [Glycine max] gi|255641198|gb|ACU20876.1| unknown [Glycine max]

 Score =  383 bits (983), Expect = e-104,   Method: Compositional matrix adjust.
 Identities = 187/244 (76%), Positives = 202/244 (82%), Gaps = 22/244 (9%)

Query: 1   MAGRYDSNPFDEEEVNPFSDPAVRGKSSGQSRFGGGGFFTTNSASVPPATNSRLSPLPHE 60
           MAGRY SNPFDEEEVNPFS+P                       SVP ATNSRL PL  E
Sbjct: 1   MAGRYGSNPFDEEEVNPFSNPG----------------------SVPAATNSRLPPLKPE 38

Query: 61  PAGFNFERDAPIDIPLDTAADLKKKEKELQAKEAELRRREQDVRRKEEAAARAGIVLEEK 120
           P  +N+  DA +DIPLD++ DLKKKEKELQAKE ELR+REQ+VRRKEEAA+RAGIVLEEK
Sbjct: 39  PVDYNYGFDATVDIPLDSSMDLKKKEKELQAKETELRKREQEVRRKEEAASRAGIVLEEK 98

Query: 121 NWPPFFPIIHHDIANEIPIHLQRLQYVAFATYLGLFLCLLWNIVAVTTAWIKGEGVKIWF 180
           NWPPFFPIIHHDIANEIPIHLQ+LQYVAF T LGL LCL WN++AVT AWIKGEGVKIWF
Sbjct: 99  NWPPFFPIIHHDIANEIPIHLQKLQYVAFTTLLGLVLCLFWNVIAVTAAWIKGEGVKIWF 158

Query: 181 LAIIYFIAGVPGAYVLWYRPLYRAFRTESAMKFGWFFLFYLLHIGFCIFASVAPPIIFKG 240
           LAIIYFIAGVPGAYVLWYRPLYRAFR ESA+KFGWFFLFYLLHIGFCI A+VAPPI+FKG
Sbjct: 159 LAIIYFIAGVPGAYVLWYRPLYRAFRNESALKFGWFFLFYLLHIGFCILAAVAPPIVFKG 218

Query: 241 KSLT 244
           KSLT
Sbjct: 219 KSLT 222

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|259490150|ref|NP_001158996.1| SC3 protein [Zea mays] gi|195624852|gb|ACG34256.1| SC3 protein [Zea mays] gi|224035591|gb|ACN36871.1| unknown [Zea mays] gi|414887137|tpg|DAA63151.1| TPA: SC3 protein [Zea mays]

 Score =  377 bits (967), Expect = e-102,   Method: Compositional matrix adjust.
 Identities = 173/244 (70%), Positives = 212/244 (86%), Gaps = 5/244 (2%)

Query: 1   MAGRYDSNPFDEEEVNPFSDPAVRGKSSGQSRFGGGGFFTTNSASVPPATNSRLSPLPHE 60
           MAGRYD NPF+EE+VNPFS+ A RGK+ GQS FGGG F+  N+ ++PPA+NSRLSPLP E
Sbjct: 1   MAGRYDGNPFEEEDVNPFSEQA-RGKAGGQSNFGGGAFYMPNTRNMPPASNSRLSPLPPE 59

Query: 61  PAGFNFERDAPIDIPLDTAADLKKKEKELQAKEAELRRREQDVRRKEEAAARAGIVLEEK 120
           PA F+    A +DIPLD++ DLK++EKELQA+EAEL +RE++++R+EEAAARAGIV+EEK
Sbjct: 60  PADFS----ATVDIPLDSSKDLKRREKELQAREAELNKREKELKRREEAAARAGIVIEEK 115

Query: 121 NWPPFFPIIHHDIANEIPIHLQRLQYVAFATYLGLFLCLLWNIVAVTTAWIKGEGVKIWF 180
           NWPPF P+IHHDI NEIP HLQR+QYVAFA++LGL  CL WN++AVTTAWIKGEGVKIW 
Sbjct: 116 NWPPFLPLIHHDITNEIPSHLQRMQYVAFASFLGLVCCLFWNVIAVTTAWIKGEGVKIWL 175

Query: 181 LAIIYFIAGVPGAYVLWYRPLYRAFRTESAMKFGWFFLFYLLHIGFCIFASVAPPIIFKG 240
           LAIIYFI+GVPGAYVLWYRPLY A RT+SA+KFG FFL Y+ HI FC+F++VAPP++F+G
Sbjct: 176 LAIIYFISGVPGAYVLWYRPLYNAMRTDSALKFGLFFLLYVFHILFCVFSAVAPPVVFEG 235

Query: 241 KSLT 244
           KSL 
Sbjct: 236 KSLA 239

Source: Zea mays

Species: Zea mays

Genus: Zea

Family: Poaceae

Order: Poales

Class: Liliopsida

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224124600|ref|XP_002319372.1| predicted protein [Populus trichocarpa] gi|222857748|gb|EEE95295.1| predicted protein [Populus trichocarpa]

 Score =  375 bits (964), Expect = e-102,   Method: Compositional matrix adjust.
 Identities = 184/241 (76%), Positives = 208/241 (86%), Gaps = 5/241 (2%)

Query: 4   RYDSNPFDEEEVNPFSDPAVRGKSSGQSRFGGGGFFTTNSASVPPATNSRLSPLPHEPAG 63
           RYDSNPFDEEEVNPF+D   +GK SGQS +GGG F+  N  SVPPAT SRLSPLPHEP  
Sbjct: 3   RYDSNPFDEEEVNPFADQGGKGKGSGQSNYGGGAFYMPNPGSVPPAT-SRLSPLPHEP-- 59

Query: 64  FNFERDAPIDIPLDTAADLKKKEKELQAKEAELRRREQDVRRKEEAAARAGIVLEEKNWP 123
             ++R A IDIPLD+  D+K KEKELQAKEAEL+RREQ+++RKE+A ARAGIV+E+KNWP
Sbjct: 60  --YDRGATIDIPLDSGKDIKAKEKELQAKEAELKRREQELKRKEDAIARAGIVIEDKNWP 117

Query: 124 PFFPIIHHDIANEIPIHLQRLQYVAFATYLGLFLCLLWNIVAVTTAWIKGEGVKIWFLAI 183
           PFFPIIHHDI NEIPIHLQ++QYVAF T LGLF+CL WNI+AVTTAWIKGEG  IWFLAI
Sbjct: 118 PFFPIIHHDIGNEIPIHLQKMQYVAFTTLLGLFVCLSWNIIAVTTAWIKGEGPTIWFLAI 177

Query: 184 IYFIAGVPGAYVLWYRPLYRAFRTESAMKFGWFFLFYLLHIGFCIFASVAPPIIFKGKSL 243
           IYFIAGVPG YV+WYRPLYRA RT+SA+KFGWFF  YL HIGFCIFA+VAPPI+FKGKSL
Sbjct: 178 IYFIAGVPGGYVMWYRPLYRAMRTDSALKFGWFFFAYLFHIGFCIFAAVAPPIVFKGKSL 237

Query: 244 T 244
            
Sbjct: 238 A 238

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357446395|ref|XP_003593475.1| Secretory carrier-associated membrane protein [Medicago truncatula] gi|355482523|gb|AES63726.1| Secretory carrier-associated membrane protein [Medicago truncatula]

 Score =  370 bits (951), Expect = e-100,   Method: Compositional matrix adjust.
 Identities = 180/244 (73%), Positives = 201/244 (82%), Gaps = 22/244 (9%)

Query: 1   MAGRYDSNPFDEEEVNPFSDPAVRGKSSGQSRFGGGGFFTTNSASVPPATNSRLSPLPHE 60
           MAGRYDSNPFDEE+VNPFS                      NS  V PATNSR +PL  E
Sbjct: 1   MAGRYDSNPFDEEQVNPFS----------------------NSGGVAPATNSRPAPLNPE 38

Query: 61  PAGFNFERDAPIDIPLDTAADLKKKEKELQAKEAELRRREQDVRRKEEAAARAGIVLEEK 120
            AG+N+     +DIPLD + D+KKKE+ELQAKEAELR+REQ+VRRKEEA +RAGIV+EEK
Sbjct: 39  RAGYNYGFGQTVDIPLDASTDVKKKERELQAKEAELRKREQEVRRKEEAISRAGIVIEEK 98

Query: 121 NWPPFFPIIHHDIANEIPIHLQRLQYVAFATYLGLFLCLLWNIVAVTTAWIKGEGVKIWF 180
           NWPPFFPIIHHDIANEIP+HLQRLQYVAF + LGL LCL WN+VAVT AWIKGEGVKIWF
Sbjct: 99  NWPPFFPIIHHDIANEIPVHLQRLQYVAFFSLLGLVLCLTWNVVAVTAAWIKGEGVKIWF 158

Query: 181 LAIIYFIAGVPGAYVLWYRPLYRAFRTESAMKFGWFFLFYLLHIGFCIFASVAPPIIFKG 240
           LAIIYFIAGVPGAYVLWY+PLYRAFRT+SA+KFGWFFLFYLLH+GFCI A+VAPPI+FKG
Sbjct: 159 LAIIYFIAGVPGAYVLWYKPLYRAFRTDSAIKFGWFFLFYLLHLGFCILAAVAPPIVFKG 218

Query: 241 KSLT 244
           KSLT
Sbjct: 219 KSLT 222

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	244
TAIR|locus:2008465	289	SC3 "secretory carrier 3" [Ara	0.827	0.698	0.698	6.4e-85
TAIR|locus:2051409	282	SCAMP3 "Secretory carrier memb	0.811	0.702	0.679	4.6e-78
UNIPROTKB|Q8H5X5	306	SCAMP1 "Secretory carrier-asso	0.975	0.777	0.598	2.7e-77
TAIR|locus:2020828	283	SCAMP4 "Secretory carrier memb	0.815	0.703	0.635	1.6e-73
TAIR|locus:2195371	264	SCAMP5 "Secretory carrier memb	0.774	0.715	0.550	2.3e-62
ZFIN|ZDB-GENE-030131-6432	325	scamp2l "secretory carrier mem	0.528	0.396	0.358	9.8e-20
ZFIN|ZDB-GENE-040426-2702	326	scamp2 "secretory carrier memb	0.909	0.680	0.279	6.5e-19
MGI|MGI:1346518	329	Scamp2 "secretory carrier memb	0.918	0.680	0.258	1.7e-18
UNIPROTKB|F1SJ46	328	SCAMP2 "Uncharacterized protei	0.913	0.679	0.273	2.2e-18
UNIPROTKB|O15127	329	SCAMP2 "Secretory carrier-asso	0.918	0.680	0.270	3.6e-18

TAIR|locus:2008465 SC3 "secretory carrier 3" [Arabidopsis thaliana (taxid:3702)]

 Score = 791 (283.5 bits), Expect = 6.4e-85, Sum P(2) = 6.4e-85
 Identities = 141/202 (69%), Positives = 162/202 (80%)

Query:    42 NSASVPPATNSRLSPLPHEPAGFNFERDAPIDIPXXXXXXXXXXXXXXXXXXXXXRRREQ 101
             N+  VPPA+NSRLSPLP EP GF++ R   I +                      +RREQ
Sbjct:    21 NARGVPPASNSRLSPLPPEPVGFDYGRTVDIPLDRAGTQDLKKKEKELQAKEAELKRREQ 80

Query:   102 DVRRKEEAAARAGIVLEEKNWPPFFPIIHHDIANEIPIHLQRLQYVAFATYLGLFLCLLW 161
             D++RKE+AAARAGIV+E KNWPPFFP+IHHDIANEIP+HLQRLQYV FATYLGL LCL W
Sbjct:    81 DLKRKEDAAARAGIVIEVKNWPPFFPLIHHDIANEIPVHLQRLQYVTFATYLGLVLCLFW 140

Query:   162 NIVAVTTAWIKGEGVKIWFLAIIYFIAGVPGAYVLWYRPLYRAFRTESAMKFGWFFLFYL 221
             NI+AVTTAWIKGEGV IW LA+IYFIAGVPG YVLWYRPLYRAFRT+SA+ FGWFFLFY+
Sbjct:   141 NIIAVTTAWIKGEGVTIWLLALIYFIAGVPGGYVLWYRPLYRAFRTDSALSFGWFFLFYM 200

Query:   222 LHIGFCIFASVAPPIIFKGKSL 243
             LHI FC+FA+VAPP++FKGKSL
Sbjct:   201 LHIAFCVFAAVAPPVVFKGKSL 222

GO:0005886 "plasma membrane" evidence=ISM;IDA

GO:0015031 "protein transport" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

GO:0022857 "transmembrane transporter activity" evidence=ISS

GO:0016020 "membrane" evidence=IDA

GO:0005829 "cytosol" evidence=RCA

GO:0005768 "endosome" evidence=IDA

GO:0005794 "Golgi apparatus" evidence=IDA

GO:0005802 "trans-Golgi network" evidence=IDA

TAIR|locus:2051409 SCAMP3 "Secretory carrier membrane protein 3" [Arabidopsis thaliana (taxid:3702)]

 Score = 740 (265.6 bits), Expect = 4.6e-78, Sum P(2) = 4.6e-78
 Identities = 138/203 (67%), Positives = 160/203 (78%)

Query:    42 NSASVPPATNSRLSPLPHEPAGFNFERDAPIDIPXXXXXXXXXXXXXXXXXXXXXRRREQ 101
             N  SVP AT S+LSPLP EP    ++R A +DIP                     +RREQ
Sbjct:    19 NPTSVPAAT-SKLSPLPPEP----YDRGATMDIPLDSGKDLKAKEKELREKEAELKRREQ 73

Query:   102 DVRRKEEAAARAGIVLEEKNWPPFFPIIHHDIANEIPIHLQRLQYVAFATYLGLFLCLLW 161
             +++RKE+A A+AGIV+EEKNWPPFFP+IHHDI+NEIPIHLQR+QYVAF + LGL +CLLW
Sbjct:    74 EIKRKEDAIAQAGIVIEEKNWPPFFPLIHHDISNEIPIHLQRIQYVAFTSMLGLVVCLLW 133

Query:   162 NIVAVTTAWIKGEGVKIWFLAIIYFIAGVPGAYVLWYRPLYRAFRTESAMKFGWFFLFYL 221
             NIVAVTTAWIKGEG  IWFLAIIYFI+GVPGAYV+WYRPLYRA RT+SA+KFGWFF  YL
Sbjct:   134 NIVAVTTAWIKGEGPTIWFLAIIYFISGVPGAYVMWYRPLYRAMRTDSALKFGWFFFTYL 193

Query:   222 LHIGFCIFASVAPPIIFKGKSLT 244
              HI FC+FA+VAPPIIFKGKSLT
Sbjct:   194 FHIAFCVFAAVAPPIIFKGKSLT 216

GO:0005886 "plasma membrane" evidence=ISM;IDA

GO:0015031 "protein transport" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

GO:0022857 "transmembrane transporter activity" evidence=ISS

GO:0006944 "cellular membrane fusion" evidence=RCA

GO:0016192 "vesicle-mediated transport" evidence=RCA

UNIPROTKB|Q8H5X5 SCAMP1 "Secretory carrier-associated membrane protein 1" [Oryza sativa Japonica Group (taxid:39947)]

 Score = 778 (278.9 bits), Expect = 2.7e-77, P = 2.7e-77
 Identities = 146/244 (59%), Positives = 178/244 (72%)

Query:     1 MAGRYDSNPFDEEEVNPFSDPAVRXXXXXXXXXXXXXXXTTNSASVPP-ATNSRLSPLPH 59
             MAGRYDSNPF+E++VNPFS+ A R                 N  +VP  ++NSRLSPLP 
Sbjct:     1 MAGRYDSNPFEEDDVNPFSEQA-RGKAGGQPSYGGGAFYMPNPRNVPSVSSNSRLSPLPP 59

Query:    60 EPAGFNFERDAPIDIPXXXXXXXXXXXXXXXXXXXXXRRREQDVRRKEEAAARAGIVLEE 119
             EPA F     A +DIP                      +RE++++R+EEAAARAGIV+EE
Sbjct:    60 EPAAFG----ATVDIPLDSSKDLKNREKELQAREAELNKREKELKRREEAAARAGIVIEE 115

Query:   120 KNWPPFFPIIHHDIANEIPIHLQRLQYVAFATYLGLFLCLLWNIVAVTTAWIKGEGVKIW 179
             KNWPPF P+IHHDI NEIP HLQR+QYVAFA++LGL  CL WN++AVT+AW+KGEGVKIW
Sbjct:   116 KNWPPFLPLIHHDITNEIPSHLQRMQYVAFASFLGLACCLFWNVIAVTSAWVKGEGVKIW 175

Query:   180 FLAIIYFIAGVPGAYVLWYRPLYRAFRTESAMKFGWFFLFYLLHIGFCIFASVAPPIIFK 239
              LAIIYFI+GVPGAYVLWYRPLY A RT+SA+KFG FFL YL HI FC+F++VAPP++F+
Sbjct:   176 LLAIIYFISGVPGAYVLWYRPLYNAMRTDSALKFGLFFLVYLFHILFCVFSAVAPPVVFE 235

Query:   240 GKSL 243
             GKSL
Sbjct:   236 GKSL 239

GO:0005769 "early endosome" evidence=IDA

GO:0005886 "plasma membrane" evidence=IDA

GO:0006897 "endocytosis" evidence=ISS

GO:0006898 "receptor-mediated endocytosis" evidence=ISS

TAIR|locus:2020828 SCAMP4 "Secretory carrier membrane protein 4" [Arabidopsis thaliana (taxid:3702)]

 Score = 696 (250.1 bits), Expect = 1.6e-73, Sum P(2) = 1.6e-73
 Identities = 129/203 (63%), Positives = 153/203 (75%)

Query:    42 NSASVPPATNSRLSPLPHEPAGFNFERDAPIDIPXXXXXXXXXXXXXXXXXXXXXRRREQ 101
             N  SVPPA+NS L PLP EP    ++R A +DIP                     +R+EQ
Sbjct:    19 NHTSVPPASNSYLKPLPPEP----YDRGATVDIPLDSGNDLRAKEMELQAKENELKRKEQ 74

Query:   102 DVRRKEEAAARAGIVLEEKNWPPFFPIIHHDIANEIPIHLQRLQYVAFATYLGLFLCLLW 161
             +++R+E+A AR G+V+EEKNWP FFP+IHHDI NEIPIHLQ++QYVAF T LGL  CLLW
Sbjct:    75 ELKRREDAIARTGVVIEEKNWPEFFPLIHHDIPNEIPIHLQKIQYVAFTTLLGLVGCLLW 134

Query:   162 NIVAVTTAWIKGEGVKIWFLAIIYFIAGVPGAYVLWYRPLYRAFRTESAMKFGWFFLFYL 221
             NIVAVT AWIKGEG  IW L+IIYF+AGVPGAYVLWYRPLYRA RT+SA+KFG FF FY+
Sbjct:   135 NIVAVTVAWIKGEGPTIWLLSIIYFLAGVPGAYVLWYRPLYRATRTDSALKFGAFFFFYV 194

Query:   222 LHIGFCIFASVAPPIIFKGKSLT 244
              HI FC FA+VAPP+IF+GKSLT
Sbjct:   195 FHIAFCGFAAVAPPVIFQGKSLT 217

GO:0005886 "plasma membrane" evidence=ISM

GO:0015031 "protein transport" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

GO:0022857 "transmembrane transporter activity" evidence=ISS

GO:0006944 "cellular membrane fusion" evidence=RCA

GO:0016192 "vesicle-mediated transport" evidence=RCA

TAIR|locus:2195371 SCAMP5 "Secretory carrier membrane protein 5" [Arabidopsis thaliana (taxid:3702)]

 Score = 594 (214.2 bits), Expect = 2.3e-62, Sum P(2) = 2.3e-62
 Identities = 104/189 (55%), Positives = 134/189 (70%)

Query:    56 PLPHEPAGFNFERDAPIDIPXXXXXXXXXXXXXXXXXXXXXRRREQDVRRKEEAAARAGI 115
             P    P  +    DA +DIP                     R++E D++R+EEA A+ G+
Sbjct:    28 PAASRPVEYGQSLDATVDIPLDNMNDSSQKQRKLADWEAELRKKEMDIKRREEAIAKFGV 87

Query:   116 VLEEKNWPPFFPIIHHDIANEIPIHLQRLQYVAFATYLGLFLCLLWNIVAVTTAWIKGEG 175
              +++KNWPPFFPIIHHDIA EIP+H Q+LQY+AFA++LG+ LCL++N++A    WIKG G
Sbjct:    88 QIDDKNWPPFFPIIHHDIAKEIPVHAQKLQYLAFASWLGIVLCLVFNVIATMVCWIKGGG 147

Query:   176 VKIWFLAIIYFIAGVPGAYVLWYRPLYRAFRTESAMKFGWFFLFYLLHIGFCIFASVAPP 235
             VKI+FLA IY + G P +YVLWYRPLYRA RT+SA+KFGWFF  YL+HIGFCI A++APP
Sbjct:   148 VKIFFLATIYALIGCPLSYVLWYRPLYRAMRTDSALKFGWFFFTYLIHIGFCIVAAIAPP 207

Query:   236 IIFKGKSLT 244
             I F GKSLT
Sbjct:   208 IFFHGKSLT 216

GO:0005886 "plasma membrane" evidence=ISM;IDA

GO:0015031 "protein transport" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

GO:0022857 "transmembrane transporter activity" evidence=ISS

GO:0005739 "mitochondrion" evidence=IDA

GO:0005794 "Golgi apparatus" evidence=IDA

GO:0006944 "cellular membrane fusion" evidence=RCA

GO:0016192 "vesicle-mediated transport" evidence=RCA

ZFIN|ZDB-GENE-030131-6432 scamp2l "secretory carrier membrane protein 2, like" [Danio rerio (taxid:7955)]

 Score = 187 (70.9 bits), Expect = 9.8e-20, Sum P(2) = 9.8e-20
 Identities = 53/148 (35%), Positives = 79/148 (53%)

Query:    98 RREQDVRRKEEAAARAGIVLEEKNWPP---FFPI---IHHDIANEIPIHLQR----LQYV 147
             R+EQ++R ++  AAR     +E NWPP   F PI    + D   EIP+  QR    + Y+
Sbjct:    97 RKEQELRDRD--AARG----KENNWPPLPKFLPIKPCFYQDFNEEIPVEYQRVCKMMYYL 150

Query:   148 AFATYLGLFLCLLWNIVAVTTAWIKGEGVKIWFLAIIYFIAGVPGAYVLWYRPLYRAFRT 207
                  + LFL LL  +V  T +     GV    L+I++FI   P A+V WYRP+Y+AF++
Sbjct:   151 WMYHSVTLFLNLLACLVYFTVS--TQNGVDFG-LSILWFILFTPVAFVCWYRPVYKAFKS 207

Query:   208 ESAMKFGWFFLFYLLHIGFCIFASVAPP 235
             +S+  F +FF  +   +   I  SV  P
Sbjct:   208 DSSFSFFFFFFIFSFQVIVYIIQSVGIP 235

GO:0016021 "integral to membrane" evidence=IEA

GO:0015031 "protein transport" evidence=IEA

ZFIN|ZDB-GENE-040426-2702 scamp2 "secretory carrier membrane protein 2" [Danio rerio (taxid:7955)]

 Score = 227 (85.0 bits), Expect = 6.5e-19, P = 6.5e-19
 Identities = 69/247 (27%), Positives = 110/247 (44%)

Query:     1 MAGRYDSNPF-DEEEVNPFSDPAVRXXXXXXXXXXXXXXXTT--NSASVPPATNSRLSPL 57
             M+G +DSNPF D  +VNPF DP+V                    N  S  PA+++     
Sbjct:     1 MSG-FDSNPFADPVDVNPFQDPSVTQVTNSGVDHIESFSPFPDGNQGSTIPASSA----- 54

Query:    58 PHEPAGFNFERDAPIDIPXXXXXXXXXXXXXXXXXXXXXRRREQDVRRKEEAAARAGIVL 117
             P +PA        P   P                     R+  +  RR++E  +R     
Sbjct:    55 PTQPAVLQ-----PSVEPSPQATAAAAQASLIKQQEELERKAAELERREQELQSRGAPTG 109

Query:   118 EEKNWPPF---FPI---IHHDIANEIPIHLQRLQYVAFATYLGLFLC--LLWNIVAVTTA 169
             ++ NWPP    FPI    + D + EIP   QRL  + +  YL ++ C  L  N++A    
Sbjct:   110 KQNNWPPLPKRFPIQPCFYQDFSEEIPQEHQRLCKMIY--YLWMWECVTLFLNVLACLAD 167

Query:   170 WIKGEGVKIWF-LAIIYFIAGVPGAYVLWYRPLYRAFRTESAMKFGWFFLFYLLHIGFCI 228
             +       + F L+I++FI   P +++ W+RP+Y+AFR++S+  F +FF  +   I   +
Sbjct:   168 FTTNSEAGVDFGLSILWFILFAPCSFICWFRPVYKAFRSDSSFNFFFFFFVFFAQIVISV 227

Query:   229 FASVAPP 235
               +V  P
Sbjct:   228 IQAVGIP 234

GO:0016021 "integral to membrane" evidence=IEA

GO:0015031 "protein transport" evidence=IEA

MGI|MGI:1346518 Scamp2 "secretory carrier membrane protein 2" [Mus musculus (taxid:10090)]

 Score = 223 (83.6 bits), Expect = 1.7e-18, P = 1.7e-18
 Identities = 63/244 (25%), Positives = 104/244 (42%)

Query:     5 YDSNPF-DEEEVNPFSDPAVRXXXXXXXXXXXXXX--XTTNSASVPPATNSRLSPLPHEP 61
             +D+NPF D  +VNPF DP+V                   TN+A+  PAT +   P P +P
Sbjct:     4 FDTNPFADPVDVNPFQDPSVTQLTNAPQSGLAEFNPFSETNAATTVPATQA---PGPSQP 60

Query:    62 AGFNFERDAPIDIPXXXXXXXXXXXXXXXXXXXXXRRREQDVRRKEEAAAR--AGIVLEE 119
             A      +     P                      R+  ++ RKE       A + + +
Sbjct:    61 AVLQPSVEPAQPTPQAVAAAAQAGLLRQQEELD---RKAAELERKERELQNTAANLHVRD 117

Query:   120 KNWPPF------FPIIHHDIANEIPIHLQRLQYVAFATYLGLFLCLLWNIVAVTTAWIKG 173
              NWPP        P  + D + EIP   QR+  + +  ++   + L  N++A   AW   
Sbjct:   118 NNWPPLPSWCPVKPCFYQDFSTEIPADYQRICKMLYYLWMLHSVTLFLNLLACL-AWFTS 176

Query:   174 EGVK--IWFLAIIYFIAGVPGAYVLWYRPLYRAFRTESAMKFGWFFLFYLLHIGFCIFAS 231
             +      + L+I++F+   P A++ WYRP+Y+AFR++++  F  FF  +   IG      
Sbjct:   177 DAANGTAFGLSILWFLIFTPCAFLCWYRPIYKAFRSDNSFSFFVFFFVFFCQIGIYFIQL 236

Query:   232 VAPP 235
             +  P
Sbjct:   237 IGLP 240

GO:0005768 "endosome" evidence=IEA

GO:0005794 "Golgi apparatus" evidence=IEA

GO:0006810 "transport" evidence=IEA

GO:0015031 "protein transport" evidence=ISO

GO:0016020 "membrane" evidence=IEA

GO:0016021 "integral to membrane" evidence=ISO

GO:0030133 "transport vesicle" evidence=ISO

GO:0032588 "trans-Golgi network membrane" evidence=ISO

GO:0055038 "recycling endosome membrane" evidence=ISO

UNIPROTKB|F1SJ46 SCAMP2 "Uncharacterized protein" [Sus scrofa (taxid:9823)]

 Score = 222 (83.2 bits), Expect = 2.2e-18, P = 2.2e-18
 Identities = 67/245 (27%), Positives = 103/245 (42%)

Query:     5 YDSNPF-DEEEVNPFSDPAVRXXXXXXXXXXXXXX--XTTNSASVPPATNSRLSPLPHEP 61
             +D+NPF D  +VNPF DP+V                   TN+A+  P T     P P +P
Sbjct:     4 FDTNPFADPVDVNPFQDPSVTQLTNAPQGGLAEFNPFSETNAATTVPVTQL---PGPSQP 60

Query:    62 AGFNFERDAPIDIPXXXXXXXXXXXXXXXXXXXXXRRREQDVRRKEEAAAR--AGIVLEE 119
             A      +     P                      R+  ++ RKE       A + + E
Sbjct:    61 AVLQPSVEPTQPTPQAVASAAQASLLRQQEELD---RKAAELERKERELQNTVANLHVRE 117

Query:   120 KNWPPF------FPIIHHDIANEIPIHLQRLQYVAFATYLGLFLCLLWNIVAVTTAWI-- 171
              NWPP        P  + D + EIP   QR+  + +  ++   + L  N++A   AW   
Sbjct:   118 NNWPPLPIWCPIKPCFYQDFSTEIPADYQRICKMLYYLWMLHSVTLFLNLLACL-AWFLV 176

Query:   172 -KGEGVKIWFLAIIYFIAGVPGAYVLWYRPLYRAFRTESAMKFGWFFLFYLLHIGFCIFA 230
                 GV    L+I++F+   P A++ WYRP+Y+AFR++++  F  FF  +   IG  I  
Sbjct:   177 DTSRGVDFG-LSILWFVIFTPCAFLCWYRPIYKAFRSDNSFSFFVFFFVFFCQIGIYIIQ 235

Query:   231 SVAPP 235
              V  P
Sbjct:   236 LVGIP 240

GO:0055038 "recycling endosome membrane" evidence=IEA

GO:0032588 "trans-Golgi network membrane" evidence=IEA

GO:0005794 "Golgi apparatus" evidence=IEA

GO:0005634 "nucleus" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

GO:0015031 "protein transport" evidence=IEA

UNIPROTKB|O15127 SCAMP2 "Secretory carrier-associated membrane protein 2" [Homo sapiens (taxid:9606)]

 Score = 220 (82.5 bits), Expect = 3.6e-18, P = 3.6e-18
 Identities = 66/244 (27%), Positives = 104/244 (42%)

Query:     5 YDSNPF-DEEEVNPFSDPAVRXXXXXXXXXXXXXX--XTTNSASVPPATNSRLSPLPHEP 61
             +D+NPF D  +VNPF DP+V                   TN+A+  P T     P   +P
Sbjct:     4 FDTNPFADPVDVNPFQDPSVTQLTNAPQGGLAEFNPFSETNAATTVPVTQL---PGSSQP 60

Query:    62 AGFNFERDAPIDIPXXXXXXXXXXXXXXXXXXXXXRRREQDVRRKEEAAAR--AGIVLEE 119
             A      +     P                      R+  ++ RKE       A + + +
Sbjct:    61 AVLQPSVEPTQPTPQAVVSAAQAGLLRQQEELD---RKAAELERKERELQNTVANLHVRQ 117

Query:   120 KNWPPF------FPIIHHDIANEIPIHLQRLQYVAFATYLGLFLCLLWNIVAVTTAWIKG 173
              NWPP        P  + D + EIP   QR+  + +  ++   + L  N++A   AW  G
Sbjct:   118 NNWPPLPSWCPVKPCFYQDFSTEIPADYQRICKMLYYLWMLHSVTLFLNLLACL-AWFSG 176

Query:   174 EGVK-IWF-LAIIYFIAGVPGAYVLWYRPLYRAFRTESAMKFGWFFLFYLLHIGFCIFAS 231
                K + F L+I++F+   P A++ WYRP+Y+AFR++++  F  FF  +   IG  I   
Sbjct:   177 NSSKGVDFGLSILWFLIFTPCAFLCWYRPIYKAFRSDNSFSFFVFFFVFFCQIGIYIIQL 236

Query:   232 VAPP 235
             V  P
Sbjct:   237 VGIP 240

GO:0032588 "trans-Golgi network membrane" evidence=IDA

GO:0055038 "recycling endosome membrane" evidence=IDA

GO:0016021 "integral to membrane" evidence=IDA

GO:0015031 "protein transport" evidence=IDA

GO:0005515 "protein binding" evidence=IPI

GO:0006892 "post-Golgi vesicle-mediated transport" evidence=TAS

GO:0005634 "nucleus" evidence=IDA

GO:0005730 "nucleolus" evidence=IDA

GO:0005794 "Golgi apparatus" evidence=IDA

GO:0043231 "intracellular membrane-bounded organelle" evidence=IDA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q9ZTX0	SCAM_PEA	No assigned EC number	0.7090	0.9098	0.7681	N/A	no
Q8H5X5	SCAM1_ORYSJ	No assigned EC number	0.6897	0.9795	0.7810	yes	no
Q9M5P2	SCAM3_ARATH	No assigned EC number	0.7165	0.9016	0.7612	yes	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input: estExt_fgenesh4_pm.C_LG_XIII0422 hypothetical protein (304 aa) (Populus trichocarpa)

Predicted Functional Partners:

Sorry, there are no predicted associations at the current settings.

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	244
pfam04144	177	pfam04144, SCAMP, SCAMP family	7e-60
pfam12072	201	pfam12072, DUF3552, Domain of unknown function (DU	5e-04
pfam13025	70	pfam13025, DUF3886, Protein of unknown function (D	0.002

>gnl|CDD|190882 pfam04144, SCAMP, SCAMP family

 Score =  186 bits (474), Expect = 7e-60
 Identities = 58/125 (46%), Positives = 77/125 (61%), Gaps = 6/125 (4%)

Query: 118 EEKNWPPFF------PIIHHDIANEIPIHLQRLQYVAFATYLGLFLCLLWNIVAVTTAWI 171
            E NWPP        P  +HDI+ EIP+  QRL Y  +  +LGL L L +NI+A    +I
Sbjct: 1   RENNWPPLPSFCPVKPCFYHDISEEIPVEYQRLVYFLYYLWLGLVLTLFYNIIACLALFI 60

Query: 172 KGEGVKIWFLAIIYFIAGVPGAYVLWYRPLYRAFRTESAMKFGWFFLFYLLHIGFCIFAS 231
            G G   + L+I+YFI G PG++V WYRP+Y+AFRT+S+  F WFF  + LHI FCI  +
Sbjct: 61  GGGGGTDFGLSILYFILGTPGSFVCWYRPVYKAFRTDSSFNFFWFFFIFFLHILFCIIQA 120

Query: 232 VAPPI 236
           V  P 
Sbjct: 121 VGIPG 125

In vertebrates, secretory carrier membrane proteins (SCAMPs) 1-3 constitute a family of putative membrane-trafficking proteins composed of cytoplasmic N-terminal sequences with NPF repeats, four central transmembrane regions (TMRs), and a cytoplasmic tail. SCAMPs probably function in endocytosis by recruiting EH-domain proteins to the N-terminal NPF repeats but may have additional functions mediated by their other sequences. Length = 177

>gnl|CDD|221408 pfam12072, DUF3552, Domain of unknown function (DUF3552)

 Score = 39.4 bits (93), Expect = 5e-04
 Identities = 14/29 (48%), Positives = 19/29 (65%)

Query: 80  ADLKKKEKELQAKEAELRRREQDVRRKEE 108
             L+KKE+ L+ KE EL  R+Q +  KEE
Sbjct: 99  ESLEKKEESLEEKEKELAARQQQLEEKEE 127

This presumed domain is functionally uncharacterized. This domain is found in bacteria, archaea and eukaryotes. This domain is about 200 amino acids in length. This domain is found associated with pfam00013, pfam01966. This domain has a single completely conserved residue A that may be functionally important. Length = 201

>gnl|CDD|205206 pfam13025, DUF3886, Protein of unknown function (DUF3886)

 Score = 35.4 bits (82), Expect = 0.002
 Identities = 19/45 (42%), Positives = 27/45 (60%), Gaps = 7/45 (15%)

Query: 77  DTAADLKKKEKELQAKEAELRRREQDVRRKEEAAARAGIVLEEKN 121
           D  A LK K+KEL+A+E + R  E++ R++EE   R      EKN
Sbjct: 17  DLLAKLKAKKKELKAEEEK-REEEEEARKREERKER------EKN 54

This family of proteins is functionally uncharacterized. This family of proteins is found in bacteria. Proteins in this family are approximately 90 amino acids in length. There are two completely conserved L residues that may be functionally important. Length = 70

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	244
KOG3088	313	consensus Secretory carrier membrane protein [Intr	100.0
PF04144	177	SCAMP: SCAMP family; InterPro: IPR007273 In verteb	100.0
KOG3088	313	consensus Secretory carrier membrane protein [Intr	99.14
PF05915	115	DUF872: Eukaryotic protein of unknown function (DU	86.78

>KOG3088 consensus Secretory carrier membrane protein [Intracellular trafficking, secretion, and vesicular transport]

Probab=100.00  E-value=2.7e-82  Score=569.29  Aligned_cols=215  Identities=54%  Similarity=0.968  Sum_probs=195.8

Q ss_pred             CCCCCCCCCCCC-CCCCCCCCccccccCCCCCCCCCCCccccCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCccCCccc-
Q 026079            1 MAGRYDSNPFDE-EEVNPFSDPAVRGKSSGQSRFGGGGFFTTNSASVPPATNSRLSPLPHEPAGFNFERDAPIDIPLDT-   78 (244)
Q Consensus         1 M~~~~d~nPf~~-~~~NPF~Dpsv~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~p~~~e~~~~~~~~~~~~~~~~~~-   78 (244)
                      |+ +||+|||+| +++|||+||+|+|+.++                      +.++|.+++++++.  .+.|+++|.++ 
T Consensus         1 ~s-~~d~NPFadp~~~NPF~dp~~~q~~~~----------------------~~~~p~~~~~~~~~--~~~tv~~P~~~~   55 (313)
T KOG3088|consen    1 MS-RYDPNPFAEPELVNPFADPAVVQPAST----------------------PPLSPLPPEPAPSD--QGPTVDIPLDSP   55 (313)
T ss_pred             CC-CCCCCCCCCcccCCCCCCccccCCccC----------------------CCCCCCCCCCCCCC--CCCccccCCCCC
Confidence            67 999999998 88999999999987222                      23344444554332  36778888877 


Q ss_pred             ---hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCCcCCCC------CCCCccccccccchhHhHHHHHHHHH
Q 026079           79 ---AADLKKKEKELQAKEAELRRREQDVRRKEEAAARAGIVLEEKNWP------PFFPIIHHDIANEIPIHLQRLQYVAF  149 (244)
Q Consensus        79 ---~~~l~~k~~EL~rke~EL~rRE~eL~~re~~~~~~g~~~~~~NwP------p~~P~~y~dI~~EIP~~~q~~v~~~y  149 (244)
                         .+|+++||+||.|||+||+|||+||+|||++++++|..+++||||      |++|||||||++|||+|+||+||++|
T Consensus        56 ~~~a~~~~~kq~eL~~rqeEL~Rke~ELdRREr~~a~~g~~~~~nNWPPLP~~~pv~PcfyqD~s~EIPv~~Qk~vk~~y  135 (313)
T KOG3088|consen   56 STQAKDLAKKQAELLKKQEELRRKEQELDRRERALARAGIVIRENNWPPLPSFIPVFPCFYQDISNEIPVEFQKLVKRAY  135 (313)
T ss_pred             cchhhHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhhccCcccccCCCCCCCCCCcccccccccccccCHHHHHHHHHHH
Confidence               789999999999999999999999999999999999999999999      56799999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHhhhhhHHhHhhHHHHHHhhcCcchhHHHHHHHHHHHHHHHHh
Q 026079          150 ATYLGLFLCLLWNIVAVTTAWIKGEGVKIWFLAIIYFIAGVPGAYVLWYRPLYRAFRTESAMKFGWFFLFYLLHIGFCIF  229 (244)
Q Consensus       150 ~~wl~~~~~L~~N~l~~~~~~i~g~~~~~f~laily~ilg~P~sf~~WYrplY~A~r~dss~~F~~FF~~~~~~i~f~v~  229 (244)
                      |+||++++||+||+++|+++||+|+++.+|+|||||+++|+||||+|||||||||||+||||||+||||+|++|++|||+
T Consensus       136 ylwm~~~~tL~~Niia~la~~i~g~~~~~f~Laii~fllftPcsyVcWyRPlYkAFRsDSSf~F~~FFF~y~~q~~~~v~  215 (313)
T KOG3088|consen  136 YLWMGLVLTLLWNIIACLAWWIKGGGGTIFGLAIIWFLLFTPCSYVCWYRPLYKAFRTDSSFNFGAFFFTYFFQIVFCVF  215 (313)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHcCCCchhhHHHHHHHHHhCCceeeEeehHHHHHhccccchhhHHHHHHHHHHHHHHHH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             hhccCCccccCccCC
Q 026079          230 ASVAPPIIFKGKSLT  244 (244)
Q Consensus       230 ~aiG~p~~f~g~~~~  244 (244)
                      +|||    |+||+++
T Consensus       216 qAvg----f~g~~~~  226 (313)
T KOG3088|consen  216 QAVG----FPGWGLC  226 (313)
T ss_pred             HHHc----cCCcchh
Confidence            9999    8898875

>PF04144 SCAMP: SCAMP family; InterPro: IPR007273 In vertebrates, secretory carrier membrane proteins (SCAMPs) 1-3 constitute a family of putative membrane-trafficking proteins composed of cytoplasmic N-terminal sequences with NPF repeats, four central transmembrane regions (TMRs), and a cytoplasmic tail

Probab=100.00  E-value=2.8e-45  Score=313.59  Aligned_cols=120  Identities=44%  Similarity=0.902  Sum_probs=116.3

Q ss_pred             CcCCCCCCC------CccccccccchhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHhhhh
Q 026079          118 EEKNWPPFF------PIIHHDIANEIPIHLQRLQYVAFATYLGLFLCLLWNIVAVTTAWIKGEGVKIWFLAIIYFIAGVP  191 (244)
Q Consensus       118 ~~~NwPp~~------P~~y~dI~~EIP~~~q~~v~~~y~~wl~~~~~L~~N~l~~~~~~i~g~~~~~f~laily~ilg~P  191 (244)
                      |+|||||++      ||+||||++|||+++||+||++|++||++++||++|+++|++.++.|+++++|+||++|+++|+|
T Consensus         1 ~~~NwPp~~~~~~~~P~~y~di~~eIP~~~q~~v~~~y~~w~~~~~~l~~N~i~~~~~~~~~~~~~~~~lai~y~~~~~P   80 (177)
T PF04144_consen    1 RENNWPPFPKFCCIKPCFYHDISEEIPEEFQRLVKRAYYLWLFLAITLFWNFIACLALLIAGGSGSDFGLAILYLLLGTP   80 (177)
T ss_pred             CCCCCCCCccccCCCCeEEeCHhHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcceehHHHHHHHHHhH
Confidence            579999999      99999999999999999999999999999999999999999999987778899999999999999


Q ss_pred             hHHhHhhHHHHHHhhcCcchhHHHHHHHHHHHHHHHHhhhccCCcc
Q 026079          192 GAYVLWYRPLYRAFRTESAMKFGWFFLFYLLHIGFCIFASVAPPII  237 (244)
Q Consensus       192 ~sf~~WYrplY~A~r~dss~~F~~FF~~~~~~i~f~v~~aiG~p~~  237 (244)
                      +||+|||||||||+|+|||++|++||+++++|++||++++||+|..
T Consensus        81 ~sf~~wyrplY~A~r~dss~~f~~ff~~~~~~i~f~i~~aIG~p~~  126 (177)
T PF04144_consen   81 ASFFCWYRPLYKAFRTDSSFRFMWFFFFFFVHIIFCIIMAIGIPGW  126 (177)
T ss_pred             HHHHHHHHHHHHHHhcccchHHHHHHHHHHHHHHHHHHHHhccccc
Confidence            9999999999999999999999999999999999999999999964

SCAMPs probably function in endocytosis by recruiting EH-domain proteins to the N-terminal NPF repeats but may have additional functions mediated by their other sequences [].; GO: 0015031 protein transport, 0016021 integral to membrane

>KOG3088 consensus Secretory carrier membrane protein [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.14  E-value=7e-10  Score=101.26  Aligned_cols=85  Identities=28%  Similarity=0.432  Sum_probs=64.7

Q ss_pred             cchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCCc---CCCCCCCCccccccccchhHhHHHHH--HHHHHH
Q 026079           77 DTAADLKKKEKELQAKEAELRRREQDVRRKEEAAARAGIVLEE---KNWPPFFPIIHHDIANEIPIHLQRLQ--YVAFAT  151 (244)
Q Consensus        77 ~~~~~l~~k~~EL~rke~EL~rRE~eL~~re~~~~~~g~~~~~---~NwPp~~P~~y~dI~~EIP~~~q~~v--~~~y~~  151 (244)
                      .+++||+|||+||+|||+||+|||+++++-..+.+..||++.|   +-.|=+|--|--||.+|..+-..++-  +++|.+
T Consensus        64 ~kq~eL~~rqeEL~Rke~ELdRREr~~a~~g~~~~~nNWPPLP~~~pv~PcfyqD~s~EIPv~~Qk~vk~~yylwm~~~~  143 (313)
T KOG3088|consen   64 KKQAELLKKQEELRRKEQELDRRERALARAGIVIRENNWPPLPSFIPVFPCFYQDISNEIPVEFQKLVKRAYYLWMGLVL  143 (313)
T ss_pred             HHHHHHHHHHHHHHHHHHHHhHHHHHHhhccCcccccCCCCCCCCCCcccccccccccccCHHHHHHHHHHHHHHHHHHH
Confidence            4778999999999999999999999999865556667898766   45666788999999999987665543  455554


Q ss_pred             HHH--HHHHHHH
Q 026079          152 YLG--LFLCLLW  161 (244)
Q Consensus       152 wl~--~~~~L~~  161 (244)
                      -|+  .+.||.|
T Consensus       144 tL~~Niia~la~  155 (313)
T KOG3088|consen  144 TLLWNIIACLAW  155 (313)
T ss_pred             HHHHHHHHHHHH
Confidence            333  4556655

>PF05915 DUF872: Eukaryotic protein of unknown function (DUF872); InterPro: IPR008590 This entry represents several uncharacterised eukaryotic transmembrane proteins

Probab=86.78  E-value=4.4  Score=32.76  Aligned_cols=69  Identities=20%  Similarity=0.274  Sum_probs=40.3

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHhhhhhHHhHhhHHHHHHhhcCcchhH
Q 026079          142 QRLQYVAFATYLGLFLCLLWNIVAVTTAWIKGEGVKIWFLAIIYFIAGVPGAYVLWYRPLYRAFRTESAMKF  213 (244)
Q Consensus       142 q~~v~~~y~~wl~~~~~L~~N~l~~~~~~i~g~~~~~f~laily~ilg~P~sf~~WYrplY~A~r~dss~~F  213 (244)
                      .|.+-.+..+.++-++.+++.++.. +--+.+.....+.+-++=+++++|+.|.+  |-+|.|.|.-..+.|
T Consensus        41 wK~I~la~~Lli~G~~li~~g~l~~-~~~i~~~~~~~~~llilG~L~fIPG~Y~~--~i~y~a~rg~~Gysf  109 (115)
T PF05915_consen   41 WKSIALAVFLLIFGTVLIIIGLLLF-FGHIDGDRDRGWALLILGILCFIPGFYHT--RIAYYAWRGYKGYSF  109 (115)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHH-hcccCCCCcccchHHHHHHHHHhccHHHH--HHHHHHHcCCCCCCH
Confidence            4444444444443333333332221 11123444556777788888999999987  578888887665554

The function of this currently unknown.

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

No hit with e-value below 0.005

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	244
3nmd_A	72	CGMP dependent protein kinase; leucine zipper, coi	91.28

>3nmd_A CGMP dependent protein kinase; leucine zipper, coiled-coil, structural genomics, berkeley S genomics center, BSGC, dimerization; HET: MSE; 2.27A {Homo sapiens}

Probab=91.28  E-value=0.43  Score=34.67  Aligned_cols=32  Identities=25%  Similarity=0.371  Sum_probs=22.3

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 026079           80 ADLKKKEKELQAKEAELRRREQDVRRKEEAAA  111 (244)
Q Consensus        80 ~~l~~k~~EL~rke~EL~rRE~eL~~re~~~~  111 (244)
                      ..|++|.+||..|++.++++|.+|..++..++
T Consensus        26 ~~L~~K~eELr~kd~~I~eLEk~L~ekd~eI~   57 (72)
T 3nmd_A           26 YALQEKIEELRQRDALIDELELELDQKDELIQ   57 (72)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            34677777777777777777777777665543

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

No hit with probability above 80.00