Citrus Sinensis ID: 026082

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240----
MGVIKAAIGDAVLTSLWVFNLPFLGVLTGIVSKFLGVEALLPVTLLITTFLATINVLVFSLLGHVLGGASFNPSTTIAFYAAGLKPDSSLLSMAVRFPAQAAGGVAGAKAILQVMPSQHRHRLKGPSLKVDLHAGAVAEGAITFVFCFALLFIMLKGPKTLILQLWLLSVTTVGLVLTGSAYTGPSMNPANAFGWAYVNNWHNTWDLFYVYWICPFFGAFLAAWVFKFLFPAPSTPTTKKQKKS
cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHEEcccccccccHHHHHHHHHHHHHHHHHHHHHHHccccccccHHHHHHHHHHcccccccHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHEEccccccccHHHHHHHHHHHHHHHccccccccccHHHHHHHHHHccccccccccEEEEccHHHHHHHHHHHHHHHccccccccccccccc
ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccHHHHHHHHHHHHHHHHHHHHHHHHHccccccHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHccHHcccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHccccccccHHHHHHHHHHHHHHHccccccccccHHHHccHHEEccccccHccEEEEEHHHHHHHHHHHHHHHHHcccccccHHHHHccc
MGVIKAAIGDAVLTslwvfnlpflGVLTGIVSKFLGVEALLPVTLLITTFLATINVLVFSLLGHvlggasfnpstTIAFYAaglkpdssllSMAVRfpaqaaggvAGAKAILQVmpsqhrhrlkgpslkvdlhagavaEGAITFVFCFALLFIMLKGPKTLILQLWLLSVTTVGLVLTgsaytgpsmnpanaFGWAYVNNWHNTWDLFYVYWICPFFGAFLAAWVFKflfpapstpttkkqkks
MGVIKAAIGDAVLTSLWVFNLPFLGVLTGIVSKFLGVEALLPVTLLITTFLATINVLVFSLLGHVLGGASFNPSTTIAFYAAGLKPDSSLLSMAVRFPAQAAGGVAGAKAILQVMPSQHRHRLKGPSLKVDLHAGAVAEGAITFVFCFALLFIMLKGPKTLILQLWLLSVTTVGLVLTGSAYTGPSMNPANAFGWAYVNNWHNTWDLFYVYWICPFFGAFLAAWVFKFLFpapstpttkkqkks
MGVIKAAIGDAVLTSLWVFNLPFLGVLTGIVSKFLGVEALLPVTLLITTFLATINVLVFSLLGHVLGGASFNPSTTIAFYAAGLKPDSSLLSMAVRFPaqaaggvagakaILQVMPSQHRHRLKGPSLKVDLHAGAVAEGAITFVFCFALLFIMLKGPKTLILQLWllsvttvglvltgsAYTGPSMNPANAFGWAYVNNWHNTWDLFYVYWICPFFGAFLAAWVFKFLFPApstpttkkqkks
**VIKAAIGDAVLTSLWVFNLPFLGVLTGIVSKFLGVEALLPVTLLITTFLATINVLVFSLLGHVLGGASFNPSTTIAFYAAGLKPDSSLLSMAVRFPAQAAGGVAGAKAILQVMPS***HRLKGPSLKVDLHAGAVAEGAITFVFCFALLFIMLKGPKTLILQLWLLSVTTVGLVLTGSAYTGPSMNPANAFGWAYVNNWHNTWDLFYVYWICPFFGAFLAAWVFKFLFP*************
*GVIKAAIGDAVLTSLWVFNLPFLGVLTGIVSKFLGVEALLPVTLLITTFLATINVLVFSLLGHVLGGASFNPSTTIAFYAAGLKPDSSLLSMAVRFPAQAAGGVAGAKAILQVMPSQHRHRLKGPSLKVDLHAGAVAEGAITFVFCFALLFIMLKGPKTLILQLWLLSVTTVGLVLTGSAYTGPSMNPANAFGWAYVNNWHNTWDLFYVYWICPFFGAFLAAWVFKFL***************
MGVIKAAIGDAVLTSLWVFNLPFLGVLTGIVSKFLGVEALLPVTLLITTFLATINVLVFSLLGHVLGGASFNPSTTIAFYAAGLKPDSSLLSMAVRFPAQAAGGVAGAKAILQVMPSQHRHRLKGPSLKVDLHAGAVAEGAITFVFCFALLFIMLKGPKTLILQLWLLSVTTVGLVLTGSAYTGPSMNPANAFGWAYVNNWHNTWDLFYVYWICPFFGAFLAAWVFKFLFPAPS**********
*GVIKAAIGDAVLTSLWVFNLPFLGVLTGIVSKFLGVEALLPVTLLITTFLATINVLVFSLLGHVLGGASFNPSTTIAFYAAGLKPDSSLLSMAVRFPAQAAGGVAGAKAILQVMPSQHRHRLKGPSLKVDLHAGAVAEGAITFVFCFALLFIMLKGPKTLILQLWLLSVTTVGLVLTGSAYTGPSMNPANAFGWAYVNNWHNTWDLFYVYWICPFFGAFLAAWVFKFLFPAPS**********
ooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiHHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiii
iiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHooooooooooooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiii
ooooooooHHHHHHHHHHHHHHHHHHHiiHHHHHHHHHHHHHHHHHHHHooHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHHiiiHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiii
iiiiiiiHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHiiiRRRRRRRRRiiiiiiHHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiHHHHHHHHHHHHHHHHoooRRRRRRRRRRRRRRRooooooooooHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiii
oooooHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiii
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MGVIKAAIGDAVLTSLWVFNLPFLGVLTGIVSKFLGVEALLPVTLLITTFLATINVLVFSLLGHVLGGASFNPSTTIAFYAAGLKPDSSLLSMAVRFPAQAAGGVAGAKAILQVMPSQHRHRLKGPSLKVDLHAGAVAEGAITFVFCFALLFIMLKGPKTLILQLWLLSVTTVGLVLTGSAYTGPSMNPANAFGWAYVNNWHNTWDLFYVYWICPFFGAFLAAWVFKFLFPAPSTPTTKKQKKS
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query244 2.2.26 [Sep-21-2011]
Q5VR89246 Aquaporin SIP1-1 OS=Oryza yes no 0.889 0.882 0.579 1e-59
Q9ATM2243 Aquaporin SIP1-2 OS=Zea m N/A no 0.889 0.893 0.561 2e-57
Q9ATM3245 Aquaporin SIP1-1 OS=Zea m N/A no 0.877 0.873 0.564 7e-57
Q9FK43243 Probable aquaporin SIP1-2 yes no 0.991 0.995 0.436 1e-48
Q9M8W5240 Aquaporin SIP1-1 OS=Arabi no no 0.926 0.941 0.452 1e-45
Q9M1K3237 Probable aquaporin SIP2-1 no no 0.942 0.970 0.323 3e-25
Q10M80250 Aquaporin SIP2-1 OS=Oryza no no 0.918 0.896 0.312 8e-21
Q9ATM1249 Aquaporin SIP2-1 OS=Zea m N/A no 0.918 0.899 0.312 2e-20
Q9NHW7249 Aquaporin AQPAe.a OS=Aede N/A no 0.635 0.622 0.333 2e-10
O77750323 Aquaporin-4 OS=Bos taurus yes no 0.815 0.616 0.274 3e-09
>sp|Q5VR89|SIP11_ORYSJ Aquaporin SIP1-1 OS=Oryza sativa subsp. japonica GN=SIP1-1 PE=2 SV=2 Back     alignment and function desciption
 Score =  229 bits (585), Expect = 1e-59,   Method: Compositional matrix adjust.
 Identities = 127/219 (57%), Positives = 160/219 (73%), Gaps = 2/219 (0%)

Query: 14  TSLWVFNLPFLGVLTGIVSKFLGVEALLPVTLLITTFLATINVLVFSLLGHVLGGASFNP 73
           T LWV  +  LG  T  V+ +L +   +   LL+T  L ++ +  F+LL   LGGASFNP
Sbjct: 16  TFLWVLCVSTLGASTAAVTSYLRIHEGIHYALLVTVSLLSVLLFAFNLLCDALGGASFNP 75

Query: 74  STTIAFYAAGLKP--DSSLLSMAVRFPAQAAGGVAGAKAILQVMPSQHRHRLKGPSLKVD 131
           +   AF+AAGL     SSL  +A+RFPAQAAG V GA AI ++MP Q++H L GPSLKVD
Sbjct: 76  TALAAFHAAGLSSPRHSSLFPLALRFPAQAAGAVGGAMAISELMPEQYKHMLGGPSLKVD 135

Query: 132 LHAGAVAEGAITFVFCFALLFIMLKGPKTLILQLWLLSVTTVGLVLTGSAYTGPSMNPAN 191
           LH GA AE  +TFV   A+L+I++KGP+  I++ W+LS++TV LVLTG+AYTGPSMNPAN
Sbjct: 136 LHTGAAAELVLTFVITLAVLWIIVKGPRNPIVKTWMLSISTVCLVLTGAAYTGPSMNPAN 195

Query: 192 AFGWAYVNNWHNTWDLFYVYWICPFFGAFLAAWVFKFLF 230
           AFGWAYVNN HNTW+ FYVYWICPF GA LAAWVF+ +F
Sbjct: 196 AFGWAYVNNRHNTWEQFYVYWICPFVGAVLAAWVFRAVF 234
Aquaporins facilitate the transport of water and small neutral solutes across cell membranes.
Oryza sativa subsp. japonica (taxid: 39947)
>sp|Q9ATM2|SIP12_MAIZE Aquaporin SIP1-2 OS=Zea mays GN=SIP1-2 PE=2 SV=1 Back     alignment and function description
>sp|Q9ATM3|SIP11_MAIZE Aquaporin SIP1-1 OS=Zea mays GN=SIP1-1 PE=2 SV=1 Back     alignment and function description
>sp|Q9FK43|SIP12_ARATH Probable aquaporin SIP1-2 OS=Arabidopsis thaliana GN=SIP1-2 PE=2 SV=1 Back     alignment and function description
>sp|Q9M8W5|SIP11_ARATH Aquaporin SIP1-1 OS=Arabidopsis thaliana GN=SIP1-1 PE=2 SV=1 Back     alignment and function description
>sp|Q9M1K3|SIP21_ARATH Probable aquaporin SIP2-1 OS=Arabidopsis thaliana GN=SIP2-1 PE=2 SV=1 Back     alignment and function description
>sp|Q10M80|SIP21_ORYSJ Aquaporin SIP2-1 OS=Oryza sativa subsp. japonica GN=SIP2-1 PE=2 SV=1 Back     alignment and function description
>sp|Q9ATM1|SIP21_MAIZE Aquaporin SIP2-1 OS=Zea mays GN=SIP2-1 PE=2 SV=1 Back     alignment and function description
>sp|Q9NHW7|AQP_AEDAE Aquaporin AQPAe.a OS=Aedes aegypti GN=AAEL003512 PE=2 SV=2 Back     alignment and function description
>sp|O77750|AQP4_BOVIN Aquaporin-4 OS=Bos taurus GN=AQP4 PE=2 SV=3 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query244
255567687239 aquaporin sip2.1, putative [Ricinus comm 0.975 0.995 0.636 1e-84
359482050238 PREDICTED: aquaporin SIP1-2 [Vitis vinif 0.975 1.0 0.647 8e-79
388522779239 unknown [Lotus japonicus] 0.979 1.0 0.598 2e-76
224131598241 aquaporin, MIP family, SIP subfamily [Po 0.979 0.991 0.620 5e-76
224068971241 aquaporin, MIP family, SIP subfamily [Po 0.979 0.991 0.607 4e-74
356517651239 PREDICTED: aquaporin SIP1-2-like [Glycin 0.979 1.0 0.577 4e-73
359806737239 uncharacterized protein LOC100775829 [Gl 0.979 1.0 0.573 1e-72
147807242221 hypothetical protein VITISV_038971 [Viti 0.905 1.0 0.603 2e-71
363808144248 uncharacterized protein LOC100792787 [Gl 0.987 0.971 0.582 1e-70
357471315239 Aquaporin SIP1-1 [Medicago truncatula] g 0.979 1.0 0.598 5e-70
>gi|255567687|ref|XP_002524822.1| aquaporin sip2.1, putative [Ricinus communis] gi|223535882|gb|EEF37542.1| aquaporin sip2.1, putative [Ricinus communis] Back     alignment and taxonomy information
 Score =  318 bits (815), Expect = 1e-84,   Method: Compositional matrix adjust.
 Identities = 154/242 (63%), Positives = 192/242 (79%), Gaps = 4/242 (1%)

Query: 1   MGVIKAAIGDAVLTSLWVFNLPFLGVLTGIVSKFLGVEALLPVTLLITTFLATINVLVFS 60
           MGVIK+A+GDAVLTS+WVF LPFLGVLT IVS ++GVE      L IT  LAT+  L+FS
Sbjct: 1   MGVIKSAVGDAVLTSIWVFTLPFLGVLTSIVSTYVGVEPRSIPGLFITINLATLLYLMFS 60

Query: 61  LLGHVLGGASFNPSTTIAFYAAGLKPDSSLLSMAVRFPAQAAGGVAGAKAILQVMPSQHR 120
            LG  LGGASFNP+TT+  YA+GL+PD+SL+SMAVRFPAQAAGGV+GA AILQ MP +++
Sbjct: 61  FLGAALGGASFNPATTVTLYASGLRPDASLMSMAVRFPAQAAGGVSGAMAILQAMPRKYK 120

Query: 121 HRLKGPSLKVDLHAGAVAEGAITFVFCFALLFIMLKGPKTLILQLWLLSVTTVGLVLTGS 180
           H LKGPSLKVDLH GA+AEG ++F+ C A L +M KGPK  +L+LWLL+    GL   G+
Sbjct: 121 HLLKGPSLKVDLHTGAIAEGVLSFMLCLAFLSLMSKGPKNSMLKLWLLACVITGLAACGA 180

Query: 181 AYTGPSMNPANAFGWAYVNNWHNTWDLFYVYWICPFFGAFLAAWVFKFLFPAPSTPTTKK 240
            YTGPS+NPAN +GWAYV+NWHN+W+LFYVYWI P  GA L+AWVF+FLF     P++K+
Sbjct: 181 KYTGPSLNPANVYGWAYVHNWHNSWELFYVYWIGPLVGATLSAWVFRFLF----KPSSKQ 236

Query: 241 QK 242
           ++
Sbjct: 237 KQ 238

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|359482050|ref|XP_002277088.2| PREDICTED: aquaporin SIP1-2 [Vitis vinifera] gi|88604775|gb|ABD46741.1| small basic intrinsic protein 1 [Vitis vinifera] gi|147855139|emb|CAN79588.1| hypothetical protein VITISV_037967 [Vitis vinifera] Back     alignment and taxonomy information
>gi|388522779|gb|AFK49451.1| unknown [Lotus japonicus] Back     alignment and taxonomy information
>gi|224131598|ref|XP_002321130.1| aquaporin, MIP family, SIP subfamily [Populus trichocarpa] gi|222861903|gb|EEE99445.1| aquaporin, MIP family, SIP subfamily [Populus trichocarpa] Back     alignment and taxonomy information
>gi|224068971|ref|XP_002302869.1| aquaporin, MIP family, SIP subfamily [Populus trichocarpa] gi|222844595|gb|EEE82142.1| aquaporin, MIP family, SIP subfamily [Populus trichocarpa] Back     alignment and taxonomy information
>gi|356517651|ref|XP_003527500.1| PREDICTED: aquaporin SIP1-2-like [Glycine max] Back     alignment and taxonomy information
>gi|359806737|ref|NP_001241041.1| uncharacterized protein LOC100775829 [Glycine max] gi|255640235|gb|ACU20408.1| unknown [Glycine max] Back     alignment and taxonomy information
>gi|147807242|emb|CAN70854.1| hypothetical protein VITISV_038971 [Vitis vinifera] Back     alignment and taxonomy information
>gi|363808144|ref|NP_001242735.1| uncharacterized protein LOC100792787 [Glycine max] gi|255639679|gb|ACU20133.1| unknown [Glycine max] Back     alignment and taxonomy information
>gi|357471315|ref|XP_003605942.1| Aquaporin SIP1-1 [Medicago truncatula] gi|355506997|gb|AES88139.1| Aquaporin SIP1-1 [Medicago truncatula] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query244
TAIR|locus:2146268243 SIP1;2 [Arabidopsis thaliana ( 0.946 0.950 0.381 1.2e-44
TAIR|locus:2103010240 SIP1A "small and basic intrins 0.930 0.945 0.398 1.5e-44
UNIPROTKB|F1PEB5293 AQP4 "Uncharacterized protein" 0.893 0.744 0.266 1.2e-10
RGD|2143323 Aqp4 "aquaporin 4" [Rattus nor 0.893 0.674 0.266 1.7e-09
UNIPROTKB|F1LQ18333 Aqp4 "Aquaporin-4" [Rattus nor 0.893 0.654 0.266 1.9e-09
UNIPROTKB|O77750323 AQP4 "Aquaporin-4" [Bos taurus 0.852 0.643 0.257 2.8e-09
UNIPROTKB|P55087323 AQP4 "Aquaporin-4" [Homo sapie 0.184 0.139 0.46 2.9e-09
ZFIN|ZDB-GENE-040724-152320 aqp4 "aquaporin 4" [Danio reri 0.709 0.540 0.297 2.3e-08
MGI|MGI:107387323 Aqp4 "aquaporin 4" [Mus muscul 0.856 0.647 0.272 3.4e-08
UNIPROTKB|F1NJZ6313 AQP4 "Uncharacterized protein" 0.819 0.638 0.258 1.2e-07
TAIR|locus:2146268 SIP1;2 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 470 (170.5 bits), Expect = 1.2e-44, P = 1.2e-44
 Identities = 89/233 (38%), Positives = 138/233 (59%)

Query:     1 MGVIKAAIGDAVLTSLWVFNLPFLGVLTGIVSKFLGVEALLPVTLLITTFLATINVLVFS 60
             M  +K+A+GD V+T LWV      G+ T  +   +G   +    L+I+T +  +++ +F+
Sbjct:     1 MSAVKSALGDMVITFLWVILSATFGIQTAAIVSAVGFHGITWAPLVISTLVVFVSISIFT 60

Query:    61 LLGHVLGGASFNPSTTIAFYAAGLKPDSSLLSMAVRFPXXXXXXXXXXXXILQVMPSQHR 120
             ++G+VLGGASFNP    AFY AG+  DS L S+A+R P            I++++P +++
Sbjct:    61 VIGNVLGGASFNPCGNAAFYTAGVSSDS-LFSLAIRSPAQAIGAAGGAITIMEMIPEKYK 119

Query:   121 HRLKG-PSLKVDLHAGAVAEGAITFVFCFALLFIMLKGPKTLILQLWXXXXXXXXXXXXX 179
              R+ G PSL+   H GA++E  ++F   F +L I+L+GP+ L+ + +             
Sbjct:   120 TRIGGKPSLQFGAHNGAISEVVLSFSVTFLVLLIILRGPRKLLAKTFLLALATVSVFVVG 179

Query:   180 XAYTGPSMNPANAFGWAYVNNWHNTWDLFYVYWICPFFGAFLAAWVFKFLFPA 232
               +T P MNPA AFGWAY+   HNTWD FYVYWI  + GA L+A +F+ +FPA
Sbjct:   180 SKFTRPFMNPAIAFGWAYIYKSHNTWDHFYVYWISSYTGAILSAMLFRIIFPA 232
GO:0005215 "transporter activity" evidence=IEA
GO:0006810 "transport" evidence=IEA
GO:0016020 "membrane" evidence=IEA
GO:0005783 "endoplasmic reticulum" evidence=IDA
GO:0015250 "water channel activity" evidence=IGI;IDA
GO:0046685 "response to arsenic-containing substance" evidence=RCA
TAIR|locus:2103010 SIP1A "small and basic intrinsic protein 1A" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
UNIPROTKB|F1PEB5 AQP4 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)] Back     alignment and assigned GO terms
RGD|2143 Aqp4 "aquaporin 4" [Rattus norvegicus (taxid:10116)] Back     alignment and assigned GO terms
UNIPROTKB|F1LQ18 Aqp4 "Aquaporin-4" [Rattus norvegicus (taxid:10116)] Back     alignment and assigned GO terms
UNIPROTKB|O77750 AQP4 "Aquaporin-4" [Bos taurus (taxid:9913)] Back     alignment and assigned GO terms
UNIPROTKB|P55087 AQP4 "Aquaporin-4" [Homo sapiens (taxid:9606)] Back     alignment and assigned GO terms
ZFIN|ZDB-GENE-040724-152 aqp4 "aquaporin 4" [Danio rerio (taxid:7955)] Back     alignment and assigned GO terms
MGI|MGI:107387 Aqp4 "aquaporin 4" [Mus musculus (taxid:10090)] Back     alignment and assigned GO terms
UNIPROTKB|F1NJZ6 AQP4 "Uncharacterized protein" [Gallus gallus (taxid:9031)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

ID ?Name ?Annotated EC number ?Identity ?Query coverage ?Hit coverage ?RBH(Q2H) ?RBH(H2Q) ?
Q5VR89SIP11_ORYSJNo assigned EC number0.57990.88930.8821yesno
Q9FK43SIP12_ARATHNo assigned EC number0.43670.99180.9958yesno
Q9ATM2SIP12_MAIZENo assigned EC number0.56160.88930.8930N/Ano
Q9ATM3SIP11_MAIZENo assigned EC number0.56480.87700.8734N/Ano

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

No EC number assignment, probably not an enzyme!

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Your Input:
eugene3.00141013
aquaporin, MIP family, SIP subfamily (241 aa)
(Populus trichocarpa)
Predicted Functional Partners:
gw1.10499.5.1
hypothetical protein (138 aa)
  •     0.422
eugene3.33970001
Aquaporin, MIP family, NIP subfamily (234 aa)
  •     0.422

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query244
cd00333228 cd00333, MIP, Major intrinsic protein (MIP) superf 2e-14
pfam00230218 pfam00230, MIP, Major intrinsic protein 2e-11
TIGR00861216 TIGR00861, MIP, MIP family channel proteins 2e-10
COG0580241 COG0580, GlpF, Glycerol uptake facilitator and rel 5e-09
PLN00184296 PLN00184, PLN00184, aquaporin NIP1; Provisional 3e-08
PLN00027252 PLN00027, PLN00027, aquaporin TIP; Provisional 4e-08
PLN00183274 PLN00183, PLN00183, putative aquaporin NIP7; Provi 5e-05
PRK05420231 PRK05420, PRK05420, aquaporin Z; Provisional 3e-04
PLN00182283 PLN00182, PLN00182, putative aquaporin NIP4; Provi 0.003
>gnl|CDD|238204 cd00333, MIP, Major intrinsic protein (MIP) superfamily Back     alignment and domain information 
 Score = 70.0 bits (172), Expect = 2e-14
 Identities = 48/190 (25%), Positives = 78/190 (41%), Gaps = 18/190 (9%)

Query: 53  TINVLVFSLLGHVLGGASFNPSTTIAFYAAGLKPDSSLLSMAVRFPAQAAGGVAGAKAIL 112
            I VLV+++ GH+  G   NP+ T+A    G  P   L+ +     AQ  G + GA  + 
Sbjct: 44  AIFVLVYAV-GHI-SGGHINPAVTLALAVGGRFP---LIRVIPYIIAQLLGAILGAALLY 98

Query: 113 QVMPSQHRHRLKGPSLKVDLHAGAVAEG-------AITFVFCFALLFIML------KGPK 159
            +    +   L   ++   +     + G        + F+  F L+ ++        GP 
Sbjct: 99  GLYYGLYLEFLGANNIVAGIFGTYPSPGVSNGNAFFVEFIGTFILVLVVFATTDDPNGPP 158

Query: 160 TLILQLWLLSVTTVGLVLTGSAYTGPSMNPANAFGWAYVNNWHNTWDLFYVYWICPFFGA 219
              L    + +    + L G   TG SMNPA + G A        W  F+VYW+ P  GA
Sbjct: 159 PGGLAPLAIGLLVAAIGLAGGPITGASMNPARSLGPALFTGLARHWHYFWVYWVGPLIGA 218

Query: 220 FLAAWVFKFL 229
              A V+ ++
Sbjct: 219 IAGALVYDYV 228

Members of the MIP superfamily function as membrane channels that selectively transport water, small neutral molecules, and ions out of and between cells. The channel proteins share a common fold: the N-terminal cytosolic portion followed by six transmembrane helices, which might have arisen through gene duplication. On the basis of sequence similarity and functional characteristics, the superfamily can be subdivided into two major groups: water-selective channels called aquaporins (AQPs) and glycerol uptake facilitators (GlpFs). AQPs are found in all three kingdoms of life, while GlpFs have been characterized only within microorganisms. Length = 228
>gnl|CDD|215807 pfam00230, MIP, Major intrinsic protein Back     alignment and domain information
>gnl|CDD|233156 TIGR00861, MIP, MIP family channel proteins Back     alignment and domain information
>gnl|CDD|223653 COG0580, GlpF, Glycerol uptake facilitator and related permeases (Major Intrinsic Protein Family) [Carbohydrate transport and metabolism] Back     alignment and domain information
>gnl|CDD|177778 PLN00184, PLN00184, aquaporin NIP1; Provisional Back     alignment and domain information
>gnl|CDD|177664 PLN00027, PLN00027, aquaporin TIP; Provisional Back     alignment and domain information
>gnl|CDD|215092 PLN00183, PLN00183, putative aquaporin NIP7; Provisional Back     alignment and domain information
>gnl|CDD|235453 PRK05420, PRK05420, aquaporin Z; Provisional Back     alignment and domain information
>gnl|CDD|165748 PLN00182, PLN00182, putative aquaporin NIP4; Provisional Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 244
KOG0223238 consensus Aquaporin (major intrinsic protein famil 100.0
PLN00184296 aquaporin NIP1; Provisional 100.0
COG0580241 GlpF Glycerol uptake facilitator and related perme 100.0
PRK05420231 aquaporin Z; Provisional 100.0
PF00230227 MIP: Major intrinsic protein; InterPro: IPR000425 100.0
PLN00026298 aquaporin NIP; Provisional 100.0
PLN00182283 putative aquaporin NIP4; Provisional 100.0
PLN00027252 aquaporin TIP; Provisional 100.0
PLN00166250 aquaporin TIP2; Provisional 100.0
PTZ00016294 aquaglyceroporin; Provisional 100.0
PLN00167256 aquaporin TIP5; Provisional 100.0
KOG0224316 consensus Aquaporin (major intrinsic protein famil 100.0
cd00333228 MIP Major intrinsic protein (MIP) superfamily. Mem 100.0
PLN00183274 putative aquaporin NIP7; Provisional 100.0
TIGR00861216 MIP MIP family channel proteins. processes. Some m 100.0
PLN00026 298 aquaporin NIP; Provisional 99.66
PLN00184 296 aquaporin NIP1; Provisional 99.62
PLN00166 250 aquaporin TIP2; Provisional 99.57
PLN00183 274 putative aquaporin NIP7; Provisional 99.56
PLN00167 256 aquaporin TIP5; Provisional 99.52
PLN00182 283 putative aquaporin NIP4; Provisional 99.5
PLN00027 252 aquaporin TIP; Provisional 99.49
cd00333 228 MIP Major intrinsic protein (MIP) superfamily. Mem 99.49
PRK05420 231 aquaporin Z; Provisional 99.48
PTZ00016 294 aquaglyceroporin; Provisional 99.44
TIGR00861 216 MIP MIP family channel proteins. processes. Some m 99.38
KOG0223 238 consensus Aquaporin (major intrinsic protein famil 99.21
COG0580 241 GlpF Glycerol uptake facilitator and related perme 99.21
PF00230227 MIP: Major intrinsic protein; InterPro: IPR000425 99.14
KOG0224 316 consensus Aquaporin (major intrinsic protein famil 99.09
>KOG0223 consensus Aquaporin (major intrinsic protein family) [Carbohydrate transport and metabolism] Back     alignment and domain information 
Probab=100.00  E-value=1.3e-52  Score=353.59  Aligned_cols=217  Identities=29%  Similarity=0.447  Sum_probs=187.8

Q ss_pred             hhHHHHHHHHHHHHHHHHHHHHHhhhhhhhccccCCCCchhHHHHHHHHHHHHHHHHHHHhhccccccccChHHHHHHHH
Q 026082            2 GVIKAAIGDAVLTSLWVFNLPFLGVLTGIVSKFLGVEALLPVTLLITTFLATINVLVFSLLGHVLGGASFNPSTTIAFYA   81 (244)
Q Consensus         2 ~~~r~~~~Ef~gT~~lvf~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~g~i~SGah~NPavTla~~~   81 (244)
                      +.+|++++||+||++++|++|++...+..   .  ..+.+...+++++++++  +++++.+|++ ||||+|||||+++++
T Consensus         9 ~~~~~~~aEF~~T~~~vf~g~~~~~~~~~---~--~~~~~l~~ial~~Gl~v--~v~i~~~g~i-SGaH~NPAVT~a~~~   80 (238)
T KOG0223|consen    9 SFLRALIAEFLATFLFVFAGCGSVVVNPK---Y--GGPVGLLGIALAFGLAV--FVLVYSTGHI-SGAHFNPAVTLAFAV   80 (238)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhhccc---c--CCCchhHHHHHHHHHHH--HHHHhhhccc-cccccCHHHHHHHHH
Confidence            67899999999999999999998874322   1  13445667888888874  4455679998 999999999999999


Q ss_pred             cCCCCCCchhHHHHHHHHHhhhHHHHHHHHHHhcccccc---ccccCCCCCCChHHHHHHHHHHHHHHHHHHHHHhhcCC
Q 026082           82 AGLKPDSSLLSMAVRFPAQAAGGVAGAKAILQVMPSQHR---HRLKGPSLKVDLHAGAVAEGAITFVFCFALLFIMLKGP  158 (244)
Q Consensus        82 ~g~~~~~~~~~~~~yi~aQ~~Ga~~g~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~E~~~T~~l~~~il~~~~~~~  158 (244)
                      .||   +++.+++.|+.+|++|+++|+.+++.+.+.+..   .....+.++.+..|+++.|++.||.|++++++...|++
T Consensus        81 ~~~---isl~~~~~Y~vaQ~lGa~~g~~~l~~~~~~~~~~~~~~~~~~~~~~~~~q~~~~E~ilTf~Lv~~v~~~a~d~~  157 (238)
T KOG0223|consen   81 GGK---ISLFRAVAYIVAQLLGAIAGAALLKVVTPGQYNRKGLGLTGLAPGLSTGQGLVIEIILTFILVFTVFATATDPR  157 (238)
T ss_pred             hCC---CcHHHhHHHHHHHHHHHHHHHHHHheecCcccccCCcceeccCCCCCcchhHHHHHHHHHHHhheeEEEeecCC
Confidence            998   577999999999999999999999999998521   11225667789999999999999999999999554433


Q ss_pred             CcchhHHHHHHHHHHHHHHhcCCCCCCCCCchhhhHHHHhhCCCCCccchhhHhhhHhHHHHHHHHHHHHhcCCC
Q 026082          159 KTLILQLWLLSVTTVGLVLTGSAYTGPSMNPANAFGWAYVNNWHNTWDLFYVYWICPFFGAFLAAWVFKFLFPAP  233 (244)
Q Consensus       159 ~~~~~~~~~ig~~v~~~~~~~~~~tG~~lNPAr~lg~~~~~~~~~~~~~~wvy~igp~~Ga~~a~~~y~~~~~~~  233 (244)
                      ++ ...|+.||+++...+++++++||++|||||+|||+++.+   .|++|||||+||++|+++++++|+.++.++
T Consensus       158 ~~-~~a~l~IG~~v~~~~l~~g~~TG~sMNPArSfGpAvv~~---~w~~hwiYwvgP~~Ga~~a~~~y~~v~~~~  228 (238)
T KOG0223|consen  158 RS-ELAPLAIGFSVGLNILAAGPFTGASMNPARSFGPAVVYG---SWDDHWIYWVGPLLGAILAALIYRLVFIPD  228 (238)
T ss_pred             Cc-ccHHHHHHHHHHHHHHeecCcCcCccCcHHHhhHHHHhc---CCCcEEEEEhhHHHHHHHHHHHHHHhccCc
Confidence            33 789999999999999999999999999999999999987   699999999999999999999999999888

>PLN00184 aquaporin NIP1; Provisional Back     alignment and domain information
>COG0580 GlpF Glycerol uptake facilitator and related permeases (Major Intrinsic Protein Family) [Carbohydrate transport and metabolism] Back     alignment and domain information
>PRK05420 aquaporin Z; Provisional Back     alignment and domain information
>PF00230 MIP: Major intrinsic protein; InterPro: IPR000425 A number of transmembrane (TM) channel proteins can be grouped together on the basis of sequence similarities [, , , , ] Back     alignment and domain information
>PLN00026 aquaporin NIP; Provisional Back     alignment and domain information
>PLN00182 putative aquaporin NIP4; Provisional Back     alignment and domain information
>PLN00027 aquaporin TIP; Provisional Back     alignment and domain information
>PLN00166 aquaporin TIP2; Provisional Back     alignment and domain information
>PTZ00016 aquaglyceroporin; Provisional Back     alignment and domain information
>PLN00167 aquaporin TIP5; Provisional Back     alignment and domain information
>KOG0224 consensus Aquaporin (major intrinsic protein family) [Carbohydrate transport and metabolism] Back     alignment and domain information
>cd00333 MIP Major intrinsic protein (MIP) superfamily Back     alignment and domain information
>PLN00183 putative aquaporin NIP7; Provisional Back     alignment and domain information
>TIGR00861 MIP MIP family channel proteins Back     alignment and domain information
>PLN00026 aquaporin NIP; Provisional Back     alignment and domain information
>PLN00184 aquaporin NIP1; Provisional Back     alignment and domain information
>PLN00166 aquaporin TIP2; Provisional Back     alignment and domain information
>PLN00183 putative aquaporin NIP7; Provisional Back     alignment and domain information
>PLN00167 aquaporin TIP5; Provisional Back     alignment and domain information
>PLN00182 putative aquaporin NIP4; Provisional Back     alignment and domain information
>PLN00027 aquaporin TIP; Provisional Back     alignment and domain information
>cd00333 MIP Major intrinsic protein (MIP) superfamily Back     alignment and domain information
>PRK05420 aquaporin Z; Provisional Back     alignment and domain information
>PTZ00016 aquaglyceroporin; Provisional Back     alignment and domain information
>TIGR00861 MIP MIP family channel proteins Back     alignment and domain information
>KOG0223 consensus Aquaporin (major intrinsic protein family) [Carbohydrate transport and metabolism] Back     alignment and domain information
>COG0580 GlpF Glycerol uptake facilitator and related permeases (Major Intrinsic Protein Family) [Carbohydrate transport and metabolism] Back     alignment and domain information
>PF00230 MIP: Major intrinsic protein; InterPro: IPR000425 A number of transmembrane (TM) channel proteins can be grouped together on the basis of sequence similarities [, , , , ] Back     alignment and domain information
>KOG0224 consensus Aquaporin (major intrinsic protein family) [Carbohydrate transport and metabolism] Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query244
3iyz_A340 Structure Of Aquaporin-4 S180d Mutant At 10.0 A Res 5e-07
2d57_A301 Double Layered 2d Crystal Structure Of Aquaporin-4 7e-07
2zz9_A301 Structure Of Aquaporin-4 S180d Mutant At 2.8 A Reso 7e-07
3gd8_A223 Crystal Structure Of Human Aquaporin 4 At 1.8 And I 2e-06
2b5f_A303 Crystal Structure Of The Spinach Aquaporin Sopip2;1 7e-05
3cn5_A304 Crystal Structure Of The Spinach Aquaporin Sopip2;1 7e-05
3cn6_A304 Crystal Structure Of The Spinach Aquaporin Sopip2;1 7e-05
3cll_A300 Crystal Structure Of The Spinach Aquaporin Sopip2;1 8e-05
1z98_A281 Crystal Structure Of The Spinach Aquaporin Sopip2;1 9e-05
1fqy_A269 Structure Of Aquaporin-1 At 3.8 A Resolution By Ele 3e-04
1j4n_A271 Crystal Structure Of The Aqp1 Water Channel Length 3e-04
>pdb|3IYZ|A Chain A, Structure Of Aquaporin-4 S180d Mutant At 10.0 A Resolution From Electron Micrograph Length = 340 Back     alignment and structure 
Iteration: 1

 Score = 51.2 bits (121), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 23/50 (46%), Positives = 32/50 (64%), Gaps = 5/50 (10%)
Query: 182 YTGPSMNPANAFGWAYV-NNWHNTWDLFYVYWICPFFGAFLAAWVFKFLF 230
           YTG SMNPA +FG A +  NW N W    +YW+ P  GA LA  +++++F
Sbjct: 224 YTGASMNPARSFGPAVIMGNWENHW----IYWVGPIIGAVLAGALYEYVF 269
>pdb|2D57|A Chain A, Double Layered 2d Crystal Structure Of Aquaporin-4 (Aqp4m23) At 3.2 A Resolution By Electron Crystallography Length = 301 Back     alignment and structure
>pdb|2ZZ9|A Chain A, Structure Of Aquaporin-4 S180d Mutant At 2.8 A Resolution By Electron Crystallography Length = 301 Back     alignment and structure
>pdb|3GD8|A Chain A, Crystal Structure Of Human Aquaporin 4 At 1.8 And Its Mechanism Of Conductance Length = 223 Back     alignment and structure
>pdb|2B5F|A Chain A, Crystal Structure Of The Spinach Aquaporin Sopip2;1 In An Open Conformation To 3.9 Resolution Length = 303 Back     alignment and structure
>pdb|3CN5|A Chain A, Crystal Structure Of The Spinach Aquaporin Sopip2;1 S115e, S274e Mutant Length = 304 Back     alignment and structure
>pdb|3CN6|A Chain A, Crystal Structure Of The Spinach Aquaporin Sopip2;1 S274e Mutant Length = 304 Back     alignment and structure
>pdb|3CLL|A Chain A, Crystal Structure Of The Spinach Aquaporin Sopip2;1 S115e Mutant Length = 300 Back     alignment and structure
>pdb|1Z98|A Chain A, Crystal Structure Of The Spinach Aquaporin Sopip2;1 In A Closed Conformation Length = 281 Back     alignment and structure
>pdb|1FQY|A Chain A, Structure Of Aquaporin-1 At 3.8 A Resolution By Electron Crystallography Length = 269 Back     alignment and structure
>pdb|1J4N|A Chain A, Crystal Structure Of The Aqp1 Water Channel Length = 271 Back     alignment and structure

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query244
3cn5_A304 Aquaporin; membrane protein, transmembrane, transp 5e-22
3iyz_A340 Aquaporin-4; water transport, water channel, two-d 4e-21
1j4n_A271 Aquaporin 1; membrane protein, channel protein, tr 2e-20
2zz9_A301 Aquaporin-4; water transport, water channel, two-d 6e-20
3d9s_A266 Aquaporin-5, AQP-5; aquaglyceroporin, membrane pro 2e-19
2b6o_A263 Aquaporin-0, lens fiber major intrinsic protein; a 4e-18
3gd8_A223 Aquaporin-4; proton exclusion, structural genomics 4e-18
2w2e_A279 AQY1, aquaporin, aquaporin PIP2-7 7; yeast, gating 3e-17
3llq_A256 Aquaporin Z 2; aquaporin tetramer, membrane protei 6e-14
2o9g_A234 Aquaporin Z; integral membrane protein, structural 2e-13
2f2b_A246 Aquaporin AQPM; protein, integral membrane protein 3e-12
3c02_A258 Aquaglyceroporin; membrane protein, glycerol, wate 9e-08
1ldf_A281 Glycerol uptake facilitator protein; glycerol-cond 6e-07
>3cn5_A Aquaporin; membrane protein, transmembrane, transport, transport protein; 2.05A {Spinacia oleracea} PDB: 3cn6_A 3cll_A 1z98_A 2b5f_A Length = 304 Back     alignment and structure
 Score = 91.3 bits (227), Expect = 5e-22
 Identities = 58/242 (23%), Positives = 94/242 (38%), Gaps = 18/242 (7%)

Query: 4   IKAAIGDAVLTSLWVFNLPFLGVLTGIVSKFLGVEALLPVTLLIT-TFLATINVLVFSLL 62
            +AAI + + T L+++    + V T I      V       L I   F   I VLV+   
Sbjct: 61  WRAAIAEFIATLLFLY----ITVATVIGHSKETVVCGSVGLLGIAWAFGGMIFVLVYCT- 115

Query: 63  GHVLGGASFNPSTTIAFYAAGLKPDSSLLSMAVRFPAQAAGGVAGAKAILQVMPSQHRHR 122
             + GG   NP+ T   + A       LL   V   AQ  G + G   +   M   +   
Sbjct: 116 AGISGGH-INPAVTFGLFLAR---KVELLRALVYMIAQCLGAICGVGLVKAFMKGPYNQF 171

Query: 123 LKG---PSLKVDLHAGAVAEGAITFVFCFALLFIMLKGPKTLILQLWLLSVTTVGLVLT- 178
             G    +L  +      AE   TFV  + +              + +L+   +G  +  
Sbjct: 172 GGGANSVALGYNKGTALGAEIIGTFVLVYTVFSATDPKRSARDSHVPILAPLPIGFAVFM 231

Query: 179 ----GSAYTGPSMNPANAFGWAYVNNWHNTWDLFYVYWICPFFGAFLAAWVFKFLFPAPS 234
                   TG  +NPA +FG A + N +  WD  +++W+ PF GA +AA   +++  A +
Sbjct: 232 VHLATIPITGTGINPARSFGAAVIFNSNKVWDDQWIFWVGPFIGAAVAAAYHQYVLRAAA 291

Query: 235 TP 236
             
Sbjct: 292 IK 293
>3iyz_A Aquaporin-4; water transport, water channel, two-dimensional C membrane protein, baculovirus expression system, glycoprote membrane; 10.00A {Rattus norvegicus} Length = 340 Back     alignment and structure
>1j4n_A Aquaporin 1; membrane protein, channel protein, transmembrane helices; HET: BNG; 2.20A {Bos taurus} SCOP: f.19.1.1 PDB: 1h6i_A 1fqy_A 1ih5_A Length = 271 Back     alignment and structure
>2zz9_A Aquaporin-4; water transport, water channel, two-dimensional crystal, electron diffraction, electron microscopy, membrane protein; HET: PEE; 2.80A {Rattus norvegicus} PDB: 2d57_A Length = 301 Back     alignment and structure
>3d9s_A Aquaporin-5, AQP-5; aquaglyceroporin, membrane protein, water transport, X-RAY diffraction, lipid, phosphatidylserine, PSF, NPA, AR/R, water channel; HET: PS6; 2.00A {Homo sapiens} Length = 266 Back     alignment and structure
>2b6o_A Aquaporin-0, lens fiber major intrinsic protein; aquaporin-0 junctions, AQP0, lens MIP, lipid-protein interac membrane, lipid bilayer; HET: MC3; 1.90A {Ovis aries} SCOP: f.19.1.1 PDB: 1ymg_A* 2b6p_A 2c32_A 1sor_A 3m9i_A* Length = 263 Back     alignment and structure
>3gd8_A Aquaporin-4; proton exclusion, structural genomics protein structure initiative, center for structures of MEMB proteins, CSMP, glycoprotein; HET: BOG; 1.80A {Homo sapiens} Length = 223 Back     alignment and structure
>2w2e_A AQY1, aquaporin, aquaporin PIP2-7 7; yeast, gating, membrane protein; HET: BOG; 1.15A {Komagataella pastoris} PDB: 2w1p_A* Length = 279 Back     alignment and structure
>3llq_A Aquaporin Z 2; aquaporin tetramer, membrane protein, water channel, structu genomics, PSI-2, protein structure initiative; 2.01A {Agrobacterium tumefaciens str} Length = 256 Back     alignment and structure
>2o9g_A Aquaporin Z; integral membrane protein, structural genomics, P protein structure initiative, center for structures of MEMB proteins, CSMP; HET: BOG; 1.90A {Escherichia coli} PDB: 2o9f_A* 2o9d_A* 2o9e_A 1rc2_B* 2abm_A* 3nk5_A* 3nka_A* 3nkc_A* Length = 234 Back     alignment and structure
>2f2b_A Aquaporin AQPM; protein, integral membrane protein, channel, structural GENO PSI-2, protein structure initiative; 1.68A {Methanothermobacter marburgensis str} PDB: 2evu_A 3ne2_A* Length = 246 Back     alignment and structure
>3c02_A Aquaglyceroporin; membrane protein, glycerol, water, transport, structural GEN PSI-2, protein structure initiative; HET: BOG; 2.05A {Plasmodium falciparum} Length = 258 Back     alignment and structure
>1ldf_A Glycerol uptake facilitator protein; glycerol-conducting membrane channel protein, transport PROT; HET: BOG; 2.10A {Escherichia coli} SCOP: f.19.1.1 PDB: 1fx8_A* 1lda_A* 1ldi_A* Length = 281 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query244
3gd8_A223 Aquaporin-4; proton exclusion, structural genomics 100.0
3iyz_A340 Aquaporin-4; water transport, water channel, two-d 100.0
2w2e_A279 AQY1, aquaporin, aquaporin PIP2-7 7; yeast, gating 100.0
2zz9_A301 Aquaporin-4; water transport, water channel, two-d 100.0
2f2b_A246 Aquaporin AQPM; protein, integral membrane protein 100.0
1j4n_A271 Aquaporin 1; membrane protein, channel protein, tr 100.0
3cn5_A304 Aquaporin; membrane protein, transmembrane, transp 100.0
2o9g_A234 Aquaporin Z; integral membrane protein, structural 100.0
1ldf_A281 Glycerol uptake facilitator protein; glycerol-cond 100.0
3d9s_A266 Aquaporin-5, AQP-5; aquaglyceroporin, membrane pro 100.0
3llq_A256 Aquaporin Z 2; aquaporin tetramer, membrane protei 100.0
2b6o_A263 Aquaporin-0, lens fiber major intrinsic protein; a 100.0
3c02_A258 Aquaglyceroporin; membrane protein, glycerol, wate 100.0
2b6o_A 263 Aquaporin-0, lens fiber major intrinsic protein; a 99.53
3d9s_A 266 Aquaporin-5, AQP-5; aquaglyceroporin, membrane pro 99.38
3llq_A 256 Aquaporin Z 2; aquaporin tetramer, membrane protei 99.36
2w2e_A 279 AQY1, aquaporin, aquaporin PIP2-7 7; yeast, gating 99.33
2o9g_A 234 Aquaporin Z; integral membrane protein, structural 99.33
2zz9_A 301 Aquaporin-4; water transport, water channel, two-d 99.33
1j4n_A 271 Aquaporin 1; membrane protein, channel protein, tr 99.33
3c02_A 258 Aquaglyceroporin; membrane protein, glycerol, wate 99.32
2f2b_A 246 Aquaporin AQPM; protein, integral membrane protein 99.31
3iyz_A 340 Aquaporin-4; water transport, water channel, two-d 99.31
3cn5_A 304 Aquaporin; membrane protein, transmembrane, transp 99.3
3gd8_A 223 Aquaporin-4; proton exclusion, structural genomics 99.29
1ldf_A 281 Glycerol uptake facilitator protein; glycerol-cond 99.28
3kcu_A285 Probable formate transporter 1; TCDB ID 2.A.44.1.1 90.51
3kly_A280 Putative formate transporter 1; membrane protein, 82.42
>3gd8_A Aquaporin-4; proton exclusion, structural genomics protein structure initiative, center for structures of MEMB proteins, CSMP, glycoprotein; HET: BOG; 1.80A {Homo sapiens} Back     alignment and structure
Probab=100.00  E-value=2.6e-53  Score=357.24  Aligned_cols=219  Identities=22%  Similarity=0.287  Sum_probs=183.1

Q ss_pred             hhHHHHHHHHHHHHHHHHHHHHHhhhhhhhccccCCCCchhHHHHHHHHHHHHHHHHHHHhhccccccccChHHHHHHHH
Q 026082            2 GVIKAAIGDAVLTSLWVFNLPFLGVLTGIVSKFLGVEALLPVTLLITTFLATINVLVFSLLGHVLGGASFNPSTTIAFYA   81 (244)
Q Consensus         2 ~~~r~~~~Ef~gT~~lvf~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~g~i~SGah~NPavTla~~~   81 (244)
                      +++|++++||+||++|+|+++++++..  ..+. +.++.++..++++||+++ ++.+ +.++++ ||||+|||||+++++
T Consensus         2 ~~~r~~~aEfiGT~~lv~~g~g~~~~~--~~~~-~~~~~~~~~ia~~~Gl~v-~~~v-~~~g~i-SGaHlNPAVTla~~~   75 (223)
T 3gd8_A            2 AFWKAVTAEFLAMLIFVLLSLGSTINW--GGTE-KPLPVDMVLISLCFGLSI-ATMV-QCFGHI-SGGHINPAVTVAMVC   75 (223)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHTCCT--TTTT-SCCCCCHHHHHHHHHHHH-HHHH-HHHHHH-HCCCCSHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHhc--ccCC-CCCCcchHHHHHHHHHHH-HHHH-heeccc-ccceEcHHHHHHHHH
Confidence            579999999999999999999987632  1111 112345667888888885 3444 468998 999999999999999


Q ss_pred             cCCCCCCchhHHHHHHHHHhhhHHHHHHHHHHhcccccccccc--CCCCCCChHHHHHHHHHHHHHHHHHHHHHhhcCCC
Q 026082           82 AGLKPDSSLLSMAVRFPAQAAGGVAGAKAILQVMPSQHRHRLK--GPSLKVDLHAGAVAEGAITFVFCFALLFIMLKGPK  159 (244)
Q Consensus        82 ~g~~~~~~~~~~~~yi~aQ~~Ga~~g~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~E~~~T~~l~~~il~~~~~~~~  159 (244)
                      .||+   ++++++.|+++|++||++|+.+++.+++++....++  .+.++.+..++++.|+++||+|+++++...|++++
T Consensus        76 ~g~~---~~~~~~~Yi~AQ~lGA~~ga~lv~~~~~~~~~~~lg~~~~~~~~s~~~~~~~E~i~Tf~Lv~~i~~~~~~~~~  152 (223)
T 3gd8_A           76 TRKI---SIAKSVFYIAAQCLGAIIGAGILYLVTPPSVVGGLGVTMVHGNLTAGHGLLVELIITFQLVFTIFASCDSKRT  152 (223)
T ss_dssp             TTSS---CHHHHHHHHHHHHHHHHHHHHHHHHHSCHHHHTTTTCCCCCTTSCHHHHHHHHHHHHHHHHHHHHHHTCTTCS
T ss_pred             cCCC---CHHHHHHHHHHHHHHHHHHHHHHHhhcccccccceeeccCCCccCHHHHHHHHHHHHHHHHHHHHHHhccccC
Confidence            9985   569999999999999999999999999876544333  34456789999999999999999999999875432


Q ss_pred             -cchhHHHHHHHHHHHHHHhcCCCCCCCCCchhhhHHHHhhCCCCCccchhhHhhhHhHHHHHHHHHHHHhcCC
Q 026082          160 -TLILQLWLLSVTTVGLVLTGSAYTGPSMNPANAFGWAYVNNWHNTWDLFYVYWICPFFGAFLAAWVFKFLFPA  232 (244)
Q Consensus       160 -~~~~~~~~ig~~v~~~~~~~~~~tG~~lNPAr~lg~~~~~~~~~~~~~~wvy~igp~~Ga~~a~~~y~~~~~~  232 (244)
                       .....|+.||+++......++++||++|||||||||+++.+   +|+++|+||+||++|+++++++||+++.|
T Consensus       153 ~~~~~~pl~iGl~v~~~~~~g~~~TG~a~NPAR~~GP~l~~~---~w~~~Wvy~vgP~~Ga~la~~~y~~~~~p  223 (223)
T 3gd8_A          153 DVTGSIALAIGFSVAIGHLFAINYTGASMNPARSFGPAVIMG---NWENHWIYWVGPIIGAVLAGGLYEYVFCP  223 (223)
T ss_dssp             CCCSCHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHT---CCTTTTHHHHHHHHHHHHHHHHHHHTTCC
T ss_pred             CccCCccHHHHHHHHHHHHhccCCccccccHHHHHHHHHHhc---CCCcEEeehhHHHHHHHHHHHHHHHHcCC
Confidence             23467999999988777777789999999999999999986   69999999999999999999999998764
>3iyz_A Aquaporin-4; water transport, water channel, two-dimensional C membrane protein, baculovirus expression system, glycoprote membrane; 10.00A {Rattus norvegicus} Back     alignment and structure
>2w2e_A AQY1, aquaporin, aquaporin PIP2-7 7; yeast, gating, membrane protein; HET: BOG; 1.15A {Komagataella pastoris} PDB: 2w1p_A* Back     alignment and structure
>2zz9_A Aquaporin-4; water transport, water channel, two-dimensional crystal, electron diffraction, electron microscopy, membrane protein; HET: PEE; 2.80A {Rattus norvegicus} PDB: 2d57_A Back     alignment and structure
>2f2b_A Aquaporin AQPM; protein, integral membrane protein, channel, structural GENO PSI-2, protein structure initiative; 1.68A {Methanothermobacter marburgensis str} PDB: 2evu_A 3ne2_A* Back     alignment and structure
>1j4n_A Aquaporin 1; membrane protein, channel protein, transmembrane helices; HET: BNG; 2.20A {Bos taurus} SCOP: f.19.1.1 PDB: 1h6i_A 1fqy_A 1ih5_A Back     alignment and structure
>3cn5_A Aquaporin; membrane protein, transmembrane, transport, transport protein; 2.05A {Spinacia oleracea} PDB: 3cn6_A 3cll_A 1z98_A 2b5f_A Back     alignment and structure
>2o9g_A Aquaporin Z; integral membrane protein, structural genomics, P protein structure initiative, center for structures of MEMB proteins, CSMP; HET: BOG; 1.90A {Escherichia coli} PDB: 2o9f_A* 2o9d_A* 2o9e_A 1rc2_B* 2abm_A* 3nk5_A* 3nka_A* 3nkc_A* Back     alignment and structure
>1ldf_A Glycerol uptake facilitator protein; glycerol-conducting membrane channel protein, transport PROT; HET: BOG; 2.10A {Escherichia coli} SCOP: f.19.1.1 PDB: 1fx8_A* 1lda_A* 1ldi_A* Back     alignment and structure
>3d9s_A Aquaporin-5, AQP-5; aquaglyceroporin, membrane protein, water transport, X-RAY diffraction, lipid, phosphatidylserine, PSF, NPA, AR/R, water channel; HET: PS6; 2.00A {Homo sapiens} Back     alignment and structure
>3llq_A Aquaporin Z 2; aquaporin tetramer, membrane protein, water channel, structu genomics, PSI-2, protein structure initiative; 2.01A {Agrobacterium tumefaciens str} Back     alignment and structure
>2b6o_A Aquaporin-0, lens fiber major intrinsic protein; aquaporin-0 junctions, AQP0, lens MIP, lipid-protein interac membrane, lipid bilayer; HET: MC3; 1.90A {Ovis aries} SCOP: f.19.1.1 PDB: 1ymg_A* 2b6p_A 2c32_A 1sor_A 3m9i_A* Back     alignment and structure
>3c02_A Aquaglyceroporin; membrane protein, glycerol, water, transport, structural GEN PSI-2, protein structure initiative; HET: BOG; 2.05A {Plasmodium falciparum} Back     alignment and structure
>2b6o_A Aquaporin-0, lens fiber major intrinsic protein; aquaporin-0 junctions, AQP0, lens MIP, lipid-protein interac membrane, lipid bilayer; HET: MC3; 1.90A {Ovis aries} SCOP: f.19.1.1 PDB: 1ymg_A* 2b6p_A 2c32_A 1sor_A 3m9i_A* Back     alignment and structure
>3d9s_A Aquaporin-5, AQP-5; aquaglyceroporin, membrane protein, water transport, X-RAY diffraction, lipid, phosphatidylserine, PSF, NPA, AR/R, water channel; HET: PS6; 2.00A {Homo sapiens} Back     alignment and structure
>3llq_A Aquaporin Z 2; aquaporin tetramer, membrane protein, water channel, structu genomics, PSI-2, protein structure initiative; 2.01A {Agrobacterium tumefaciens str} Back     alignment and structure
>2w2e_A AQY1, aquaporin, aquaporin PIP2-7 7; yeast, gating, membrane protein; HET: BOG; 1.15A {Komagataella pastoris} PDB: 2w1p_A* Back     alignment and structure
>2o9g_A Aquaporin Z; integral membrane protein, structural genomics, P protein structure initiative, center for structures of MEMB proteins, CSMP; HET: BOG; 1.90A {Escherichia coli} PDB: 2o9f_A* 2o9d_A* 2o9e_A 1rc2_B* 2abm_A* 3nk5_A* 3nka_A* 3nkc_A* Back     alignment and structure
>2zz9_A Aquaporin-4; water transport, water channel, two-dimensional crystal, electron diffraction, electron microscopy, membrane protein; HET: PEE; 2.80A {Rattus norvegicus} PDB: 2d57_A Back     alignment and structure
>1j4n_A Aquaporin 1; membrane protein, channel protein, transmembrane helices; HET: BNG; 2.20A {Bos taurus} SCOP: f.19.1.1 PDB: 1h6i_A 1fqy_A 1ih5_A Back     alignment and structure
>3c02_A Aquaglyceroporin; membrane protein, glycerol, water, transport, structural GEN PSI-2, protein structure initiative; HET: BOG; 2.05A {Plasmodium falciparum} Back     alignment and structure
>2f2b_A Aquaporin AQPM; protein, integral membrane protein, channel, structural GENO PSI-2, protein structure initiative; 1.68A {Methanothermobacter marburgensis str} PDB: 2evu_A 3ne2_A* Back     alignment and structure
>3iyz_A Aquaporin-4; water transport, water channel, two-dimensional C membrane protein, baculovirus expression system, glycoprote membrane; 10.00A {Rattus norvegicus} Back     alignment and structure
>3cn5_A Aquaporin; membrane protein, transmembrane, transport, transport protein; 2.05A {Spinacia oleracea} PDB: 3cn6_A 3cll_A 1z98_A 2b5f_A Back     alignment and structure
>3gd8_A Aquaporin-4; proton exclusion, structural genomics protein structure initiative, center for structures of MEMB proteins, CSMP, glycoprotein; HET: BOG; 1.80A {Homo sapiens} Back     alignment and structure
>1ldf_A Glycerol uptake facilitator protein; glycerol-conducting membrane channel protein, transport PROT; HET: BOG; 2.10A {Escherichia coli} SCOP: f.19.1.1 PDB: 1fx8_A* 1lda_A* 1ldi_A* Back     alignment and structure
>3kcu_A Probable formate transporter 1; TCDB ID 2.A.44.1.1, channel, cell inner membrane, cell membrane, membrane, transmembrane; HET: MA5; 2.24A {Escherichia coli O157} PDB: 3kcv_A 3q7k_A Back     alignment and structure
>3kly_A Putative formate transporter 1; membrane protein, channel, structural genomics, PSI-2, protein structure initiative; HET: BOG; 2.10A {Vibrio cholerae} PDB: 3klz_A* Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 244
d1j4na_249 f.19.1.1 (A:) Aquaporin-1 {Cow (Bos taurus) [TaxId 1e-13
d1ymga1234 f.19.1.1 (A:6-239) Aquaporin-0 {Cow (Bos taurus) [ 1e-11
d1rc2a_231 f.19.1.1 (A:) Aquaporin Z {Escherichia coli [TaxId 1e-09
d1fx8a_254 f.19.1.1 (A:) Glycerol uptake facilitator protein 5e-08
>d1j4na_ f.19.1.1 (A:) Aquaporin-1 {Cow (Bos taurus) [TaxId: 9913]} Length = 249 Back     information, alignment and structure

class: Membrane and cell surface proteins and peptides
fold: Aquaporin-like
superfamily: Aquaporin-like
family: Aquaporin-like
domain: Aquaporin-1
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 66.3 bits (161), Expect = 1e-13
 Identities = 40/240 (16%), Positives = 83/240 (34%), Gaps = 12/240 (5%)

Query: 5   KAAIGDAVLTSLWVFNLPFLGVLTGIVSKFLGVEALLPVTLLITTFLATINVLVFSLLGH 64
           +A + + +   L++F    + + + +   +          +     ++    L  + L  
Sbjct: 12  RAVVAEFLAMILFIF----ISIGSALGFHYPIKSNQTTGAVQDNVKVSLAFGLSIATLAQ 67

Query: 65  VLG---GASFNPSTTIAFYAAGLKPDSSLLSMAVRFPAQAAGGVAGAKAILQVMPSQHRH 121
            +G   GA  NP+ T+    +        +   +     A    A    I   +P     
Sbjct: 68  SVGHISGAHLNPAVTLGLLLSCQISVLRAIMYIIAQCVGAIVATAILSGITSSLPDNSLG 127

Query: 122 RLKGPSLKVDLHAGAVAEGAITFVFCFALLFI-MLKGPKTLILQLWLLSVTTVGLVLTGS 180
            L   +  V+   G   E   T      +L     +           +  +     L   
Sbjct: 128 -LNALAPGVNSGQGLGIEIIGTLQLVLCVLATTDRRRRDLGGSGPLAIGFSVALGHLLAI 186

Query: 181 AYTGPSMNPANAFGWAYVNNWHNTWDLFYVYWICPFFGAFLAAWVFKFLFPAPSTPTTKK 240
            YTG  +NPA +FG + +    + +   +++W+ PF GA LA  ++ F+    S+  T +
Sbjct: 187 DYTGCGINPARSFGSSVI---THNFQDHWIFWVGPFIGAALAVLIYDFILAPRSSDLTDR 243
>d1ymga1 f.19.1.1 (A:6-239) Aquaporin-0 {Cow (Bos taurus) [TaxId: 9913]} Length = 234 Back     information, alignment and structure
>d1rc2a_ f.19.1.1 (A:) Aquaporin Z {Escherichia coli [TaxId: 562]} Length = 231 Back     information, alignment and structure
>d1fx8a_ f.19.1.1 (A:) Glycerol uptake facilitator protein GlpF {Escherichia coli [TaxId: 562]} Length = 254 Back     information, alignment and structure

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query244
d1ymga1234 Aquaporin-0 {Cow (Bos taurus) [TaxId: 9913]} 100.0
d1fx8a_254 Glycerol uptake facilitator protein GlpF {Escheric 100.0
d1rc2a_231 Aquaporin Z {Escherichia coli [TaxId: 562]} 100.0
d1j4na_249 Aquaporin-1 {Cow (Bos taurus) [TaxId: 9913]} 100.0
d1ymga1 234 Aquaporin-0 {Cow (Bos taurus) [TaxId: 9913]} 99.48
d1rc2a_ 231 Aquaporin Z {Escherichia coli [TaxId: 562]} 99.35
d1j4na_ 249 Aquaporin-1 {Cow (Bos taurus) [TaxId: 9913]} 99.3
d1fx8a_ 254 Glycerol uptake facilitator protein GlpF {Escheric 99.17
>d1ymga1 f.19.1.1 (A:6-239) Aquaporin-0 {Cow (Bos taurus) [TaxId: 9913]} Back     information, alignment and structure
class: Membrane and cell surface proteins and peptides
fold: Aquaporin-like
superfamily: Aquaporin-like
family: Aquaporin-like
domain: Aquaporin-0
species: Cow (Bos taurus) [TaxId: 9913]

Probab=100.00  E-value=7.1e-51  Score=343.51  Aligned_cols=219  Identities=25%  Similarity=0.317  Sum_probs=185.2

Q ss_pred             hhHHHHHHHHHHHHHHHHHHHHHhhhhhhhccccCCCCchhHHHHHHHHHHHHHHHHHHHhhccccccccChHHHHHHHH
Q 026082            2 GVIKAAIGDAVLTSLWVFNLPFLGVLTGIVSKFLGVEALLPVTLLITTFLATINVLVFSLLGHVLGGASFNPSTTIAFYA   81 (244)
Q Consensus         2 ~~~r~~~~Ef~gT~~lvf~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~g~i~SGah~NPavTla~~~   81 (244)
                      |+||++++||+||++++|++++++..+.       .++.+...+++++++++  ...++.++++ ||||+|||||+++++
T Consensus         3 s~~r~~laEf~GT~~lvf~g~gs~~~~~-------~~~~~~~~ial~~G~~v--~~~i~~~g~i-SGaH~NPAVTla~~~   72 (234)
T d1ymga1           3 SFWRAICAEFFASLFYVFFGLGASLRWA-------PGPLHVLQVALAFGLAL--ATLVQAVGHI-SGAHVNPAVTFAFLV   72 (234)
T ss_dssp             TTHHHHHHHHHHHHHHHHHHHHHHCSCC--------CHHHHHHHHHHHHHHH--HHHHHHHTTT-TCCCCSHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhccC-------CCCcchHHHHHHHHHHH--HHHHHHHhcc-ccCccCchhhHHHHh
Confidence            7899999999999999999998765211       12234456777888764  3444579998 999999999999999


Q ss_pred             cCCCCCCchhHHHHHHHHHhhhHHHHHHHHHHhcccccccccc--CCCCCCChHHHHHHHHHHHHHHHHHHHHHhhcCCC
Q 026082           82 AGLKPDSSLLSMAVRFPAQAAGGVAGAKAILQVMPSQHRHRLK--GPSLKVDLHAGAVAEGAITFVFCFALLFIMLKGPK  159 (244)
Q Consensus        82 ~g~~~~~~~~~~~~yi~aQ~~Ga~~g~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~E~~~T~~l~~~il~~~~~~~~  159 (244)
                      .||+   ++++++.|+++|++||++|+.+++.+++++.+....  .+.++.+..++++.|++.|++++++++...+++++
T Consensus        73 ~g~i---~~~~~~~Yi~aQ~lGa~~ga~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~~~t~~lv~~i~~~~~~~~~  149 (234)
T d1ymga1          73 GSQM---SLLRAICYMVAQLLGAVAGAAVLYSVTPPAVRGNLALNTLHPGVSVGQATIVEIFLTLQFVLCIFATYDERRN  149 (234)
T ss_dssp             TTSS---CHHHHHHHHHHHHHHHHHHHHHHHHHSCTTTCTTTTCCCCCTTSCHHHHHHHHHHHHHHHHHHHHHHHCTTSC
T ss_pred             ccCC---ChhheeeeeehHHHHHHHHHHHHHHHcCccccccccccccCccchhhHHHHHHHHHHHHHHHhheeeecCCcc
Confidence            9985   669999999999999999999999999987654432  34456789999999999999999999999876433


Q ss_pred             -cchhHHHHHHHHHHHHHHhcCCCCCCCCCchhhhHHHHhhCCCCCccchhhHhhhHhHHHHHHHHHHHHhcCCCCCC
Q 026082          160 -TLILQLWLLSVTTVGLVLTGSAYTGPSMNPANAFGWAYVNNWHNTWDLFYVYWICPFFGAFLAAWVFKFLFPAPSTP  236 (244)
Q Consensus       160 -~~~~~~~~ig~~v~~~~~~~~~~tG~~lNPAr~lg~~~~~~~~~~~~~~wvy~igp~~Ga~~a~~~y~~~~~~~~~~  236 (244)
                       .....++.+|+.+.......++.||+++|||||+||+++++   .|+++|+||+||++|+++|+++|++++.++.+.
T Consensus       150 ~~~~~~~l~ig~~v~~~~~~~~~~tG~~~NPAR~~gp~v~~~---~~~~~wiy~vgP~~Ga~laa~ly~~~~~~~~~~  224 (234)
T d1ymga1         150 GRLGSVALAVGFSLTLGHLFGMYYTGAGMNPARSFAPAILTR---NFTNHWVYWVGPVIGAGLGSLLYDFLLFPRLKS  224 (234)
T ss_dssp             SCCCCHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHT---CCTTTTHHHHHHHHHHHHHHHHHHTTTSCCCCC
T ss_pred             CcCcceeEeehHHHHHHHHHhcccccccccchhhhhHHHhcc---CccCeeeeehHHHHHHHHHHHHHHHHHcCCCcc
Confidence             33466889999999999999999999999999999999986   799999999999999999999999998877643
>d1fx8a_ f.19.1.1 (A:) Glycerol uptake facilitator protein GlpF {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1rc2a_ f.19.1.1 (A:) Aquaporin Z {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1j4na_ f.19.1.1 (A:) Aquaporin-1 {Cow (Bos taurus) [TaxId: 9913]} Back     information, alignment and structure
>d1ymga1 f.19.1.1 (A:6-239) Aquaporin-0 {Cow (Bos taurus) [TaxId: 9913]} Back     information, alignment and structure
>d1rc2a_ f.19.1.1 (A:) Aquaporin Z {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1j4na_ f.19.1.1 (A:) Aquaporin-1 {Cow (Bos taurus) [TaxId: 9913]} Back     information, alignment and structure
>d1fx8a_ f.19.1.1 (A:) Glycerol uptake facilitator protein GlpF {Escherichia coli [TaxId: 562]} Back     information, alignment and structure