Citrus Sinensis ID: 026110

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240---
Protein Sequence
MVADKGKKTKVEEENAEQIDSELVLSIEKLQEIQDELEKINEEASEKVLEVEQKYSEIRKPVYDKRNDIIKSIPDFWLTAFISHPALGELLSEEDQKIFRYLSSLEVEDFKDVKSGYSITFNFSPNPYFEDNKLTKTFTFLDDDGSMKITATSIKWKEGMGIPNGVNHEKKGNKRPLAEESFFTWFSDTQEKDTIDGIQDEVAEIIKEDLWPNPLTYFNNVIPLPVSFLLFPIHAFPPVSFFS
Secondary Structure (PSIPRED)
cccccccccHHHHHHcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHcccccccHHHHcccccccccccHHHHHHHccccccEEEEcccccccEEEEEEEccccccccccEEEEEEEcccccccEEEEcccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHccccccHHHHHHcccccccccccccccccccccccc
Secondary Structure Prediction (SSPRO)
ccccccccccccHcccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccEEHHHcccHHHHHHHcHcHHHHHHHHHccEEEEcccccccEEEEEEEcccccccccEEEEEEEEEcccccEEEEEccEEEcccccccHHccccccccccccccccHccccccccccccccHHHHHHHHHHHHHcccccHHHHccccccccEEccccccccccccccc
Coil and Loop (DISEMBL)
mvadkgkktkveeENAEQIDSELVLSIEKLQEIQDELEKINEEASEKVLEVEQKYSEIrkpvydkrndIIKSIPDFWLTAFishpalgellseEDQKIFRYLSslevedfkdvksgysitfnfspnpyfednkltktftfldddgsmkITATSIKwkegmgipngvnhekkgnkrplaeesfftwfsdtqekdtIDGIQDEVAEIIkedlwpnpltyfnnviplpvsfllfpihafppvsffs
Flexible Loop (DISEMBL)
mvadkgkktkveeenaeqidselvlSIEKLQEIQDELEKINeeasekvleveqkyseirkpvydkrnDIIKSIPDFWLTAFISHPALGELLSEEDQKIFRYLSSlevedfkdvKSGYSITfnfspnpyfedNKLTKTftfldddgsmKITATsikwkegmgipngvnhekkgnkrpLAEESFFTWFSDTQEKDTIDGIQDEVAEIIKEDLWPNPLTYFNNVIPLPVSFLLFPIHAFPPVSFFS
Low Complexity Region (SEG)
MVADKGKKTKVEEENAEQIDSELVLSIEKLQEIQDELEKINEEASEKVLEVEQKYSEIRKPVYDKRNDIIKSIPDFWLTAFISHPALGELLSEEDQKIFRYLSSLEVEDFKDVKSGYSITFNFSPNPYFEDNKLTKTFTFLDDDGSMKITATSIKWKEGMGIPNGVNHEKKGNKRPLAEESFFTWFSDTQEKDTIDGIQDEVAEIIKEDLWPNPLTYFNNVIPLPVSFLLFPIHAFPPVSFFS
Disordered region (IsUnstruct)
******************************************************YSEIRKPVYDKRNDIIKSIPDFWLTAFISHPALGELLSEEDQKIFRYLSSLEVEDFKDVKSGYSITFNFSPNPYFEDNKLTKTFTFLDDDGSMKITATSIKWKEGMGI*****************ESFFTWFSDTQEKDTIDGIQDEVAEIIKEDLWPNPLTYFNNVIPLPVSFLLFPIHAFPPVS***
Disordered Region (DISOPRED)
**************************IEKLQEIQDELEKINEEASEKVLEVEQKYSEIRKPVYDKRNDIIKSIPDFWLTAFISHPALGELLSEEDQKIFRYLSSLEVEDFKDVKSGYSITFNFSPNPYFEDNKLTKTFTFLDDDGSMKITATSIKWKEGMGI*****************ESFFTWFSDTQEKDTIDGIQDEVAEIIKEDLWPNPLTYFNNVIPLPVSFLLFPIHAF*******
Disordered Region (DISEMBL)
*****************QIDSELVLSIEKLQEIQDELEKINEEASEKVLEVEQKYSEIRKPVYDKRNDIIKSIPDFWLTAFISHPALGELLSEEDQKIFRYLSSLEVEDFKDVKSGYSITFNFSPNPYFEDNKLTKTFTFLDDDGSMKITATSIKWKEGMGIPNGVNHEKKGNKRPLAEESFFTWFSDTQEKDTIDGIQDEVAEIIKEDLWPNPLTYFNNVIPLPVSFLLFPIHAFPPVSFFS
Disordered Region (DISPRO)
*****************QIDSELVLSIEKLQEIQDELEKINEEASEKVLEVEQKYSEIRKPVYDKRNDIIKSIPDFWLTAFISHPALGELLSEEDQKIFRYLSSLEVEDFKDVKSGYSITFNFSPNPYFEDNKLTKTFTFLDDDGSMKITATSIKWKEGMGIPN*V************EESFFTWFSDTQEKDTIDGIQDEVAEIIKEDLWPNPLTYFNNVIPLPVSFLLFPIHAFPPV****
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHi
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhooooo
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MVADKGKKTKVEEENxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxYSEIRKPVYDKRNDIIKSIPDFWLTAFISHPALGELLSEEDQKIFRYLSSLEVEDFKDVKSGYSITFNFSPNPYFEDNKLTKTFTFLDDDGSMKITATSIKWKEGMGIPNGVNHEKKGNKRPLAEESFFTWFSDTQEKDTIDGIQDEVAEIIKEDLWPNPLTYFNNVIPLPVSFLLFPIHAFPPVSFFS
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	243	2.2.26 [Sep-21-2011]
P53997	269	Protein SET OS=Drosophila	yes	no	0.773	0.698	0.45	6e-45
Q01105	290	Protein SET OS=Homo sapie	yes	no	0.769	0.644	0.448	1e-44
Q9EQU5	289	Protein SET OS=Mus muscul	yes	no	0.769	0.647	0.448	2e-44
Q63945	289	Protein SET OS=Rattus nor	yes	no	0.769	0.647	0.448	2e-44
Q8N831	410	Testis-specific Y-encoded	no	no	0.748	0.443	0.371	4e-32
Q9H2G4	693	Testis-specific Y-encoded	no	no	0.781	0.274	0.368	2e-31
Q5R5G8	438	Testis-specific Y-encoded	no	no	0.744	0.413	0.355	3e-31
Q9UJ04	414	Testis-specific Y-encoded	no	no	0.753	0.442	0.357	3e-31
Q9H0U9	437	Testis-specific Y-encoded	no	no	0.744	0.414	0.355	3e-31
O88852	379	Testis-specific Y-encoded	no	no	0.720	0.461	0.376	5e-31

>sp|P53997|SET_DROME Protein SET OS=Drosophila melanogaster GN=Set PE=1 SV=2

 Score =  181 bits (458), Expect = 6e-45,   Method: Compositional matrix adjust.
 Identities = 90/200 (45%), Positives = 136/200 (68%), Gaps = 12/200 (6%)

Query: 26  SIEKLQEIQDELEKINEEASEKVLEVEQKYSEIRKPVYDKRNDIIKSIPDFWLTAFISHP 85
           ++E++   Q+E++ +NE+ASE++L+VEQKY+++RKP Y+KR++++K IP+FW+T+FI+HP
Sbjct: 32  ALEQIDACQNEIDALNEKASEEILKVEQKYNKLRKPCYEKRSELVKRIPNFWVTSFINHP 91

Query: 86  ALGELLSEEDQKIFRYLSSLEVEDFKDVKSGYSITFNFSPNPYFEDNKLTKTFTFLDDDG 145
            +  +L EE+++    L+ LEVE+F+D+KSGY I F+F  NPYFE+  LTK F       
Sbjct: 92  QVSGILDEEEEECLHALNKLEVEEFEDIKSGYRINFHFDENPYFENKVLTKEFHLNSAAA 151

Query: 146 SMK-----ITATSIKWKEGMGIPNGVNHEKKGNKRPLAEE--SFFTWFSDTQEKDTIDGI 198
           S        T+T IKWKEG  +   +  +  GNK+    E  +FF WFS     D  D +
Sbjct: 152 SENGDWPASTSTPIKWKEGKNLLKLLLTKPYGNKKKRNSEYKTFFDWFS-----DNTDPV 206

Query: 199 QDEVAEIIKEDLWPNPLTYF 218
            DE+AE+IK+DLWPNPL Y+
Sbjct: 207 NDEIAELIKDDLWPNPLQYY 226

Drosophila melanogaster (taxid: 7227)

>sp|Q01105|SET_HUMAN Protein SET OS=Homo sapiens GN=SET PE=1 SV=3

 Score =  179 bits (455), Expect = 1e-44,   Method: Compositional matrix adjust.
 Identities = 88/196 (44%), Positives = 133/196 (67%), Gaps = 9/196 (4%)

Query: 26  SIEKLQEIQDELEKINEEASEKVLEVEQKYSEIRKPVYDKRNDIIKSIPDFWLTAFISHP 85
           +IE + E+Q+E++++NE+ASE++L+VEQKY+++R+P + KR+++I  IP+FW+T F++HP
Sbjct: 44  AIEHIDEVQNEIDRLNEQASEEILKVEQKYNKLRQPFFQKRSELIAKIPNFWVTTFVNHP 103

Query: 86  ALGELLSEEDQKIFRYLSSLEVEDFKDVKSGYSITFNFSPNPYFEDNKLTKTFTFLDDDG 145
            +  LL EED++   YL+ +EV +F+D+KSGY I F F  NPYFE+  L+K F  L++ G
Sbjct: 104 QVSALLGEEDEEALHYLTRVEVTEFEDIKSGYRIDFYFDENPYFENKVLSKEF-HLNESG 162

Query: 146 SMKITATSIKWKEGMGIP--NGVNHEKKGNKRPLAE-ESFFTWFSDTQEKDTIDGIQDEV 202
                +T IKWK G  +   +     K   KR   E ESFFTWF+D       D   DE+
Sbjct: 163 DPSSKSTEIKWKSGKDLTKRSSQTQNKASRKRQHEEPESFFTWFTDHS-----DAGADEL 217

Query: 203 AEIIKEDLWPNPLTYF 218
            E+IK+D+WPNPL Y+
Sbjct: 218 GEVIKDDIWPNPLQYY 233

Multitasking protein, involved in apoptosis, transcription, nucleosome assembly and histone binding. Isoform 2 anti-apoptotic activity is mediated by inhibition of the GZMA-activated DNase, NME1. In the course of cytotoxic T-lymphocyte (CTL)-induced apoptosis, GZMA cleaves SET, disrupting its binding to NME1 and releasing NME1 inhibition. Isoform 1 and isoform 2 are potent inhibitors of protein phosphatase 2A. Isoform 1 and isoform 2 inhibit EP300/CREBBP and PCAF-mediated acetylation of histones (HAT) and nucleosomes, most probably by masking the accessibility of lysines of histones to the acetylases. The predominant target for inhibition is histone H4. HAT inhibition leads to silencing of HAT-dependent transcription and prevents active demethylation of DNA. Both isoforms stimulate DNA replication of the adenovirus genome complexed with viral core proteins; however, isoform 2 specific activity is higher.

Homo sapiens (taxid: 9606)

>sp|Q9EQU5|SET_MOUSE Protein SET OS=Mus musculus GN=Set PE=1 SV=1

 Score =  179 bits (454), Expect = 2e-44,   Method: Compositional matrix adjust.
 Identities = 88/196 (44%), Positives = 133/196 (67%), Gaps = 9/196 (4%)

Query: 26  SIEKLQEIQDELEKINEEASEKVLEVEQKYSEIRKPVYDKRNDIIKSIPDFWLTAFISHP 85
           +IE + E+Q+E++++NE+ASE++L+VEQKY+++R+P + KR+++I  IP+FW+T F++HP
Sbjct: 43  AIEHIDEVQNEIDRLNEQASEEILKVEQKYNKLRQPFFQKRSELIAKIPNFWVTTFVNHP 102

Query: 86  ALGELLSEEDQKIFRYLSSLEVEDFKDVKSGYSITFNFSPNPYFEDNKLTKTFTFLDDDG 145
            +  LL EED++   YL+ +EV +F+D+KSGY I F F  NPYFE+  L+K F  L++ G
Sbjct: 103 QVSALLGEEDEEALHYLTRVEVTEFEDIKSGYRIDFYFDENPYFENKVLSKEF-HLNESG 161

Query: 146 SMKITATSIKWKEGMGIP--NGVNHEKKGNKRPLAE-ESFFTWFSDTQEKDTIDGIQDEV 202
                +T IKWK G  +   +     K   KR   E ESFFTWF+D       D   DE+
Sbjct: 162 DPSSKSTEIKWKSGKDLTKRSSQTQNKASRKRQHEEPESFFTWFTDHS-----DAGADEL 216

Query: 203 AEIIKEDLWPNPLTYF 218
            E+IK+D+WPNPL Y+
Sbjct: 217 GEVIKDDIWPNPLQYY 232

Multitasking protein, involved in apoptosis, transcription, nucleosome assembly and histone binding. Isoform 2 anti-apoptotic activity is mediated by inhibition of the GZMA-activated DNase, NME1. In the course of cytotoxic T-lymphocyte (CTL)-induced apoptosis, GZMA cleaves SET, disrupting its binding to NME1 and releasing NME1 inhibition. Isoform 1 and isoform 2 are potent inhibitors of protein phosphatase 2A. Isoform 1 and isoform 2 inhibit EP300/CREBBP and PCAF-mediated acetylation of histones (HAT) and nucleosomes, most probably by masking the accessibility of lysines of histones to the acetylases. The predominant target for inhibition is histone H4. HAT inhibition leads to silencing of HAT-dependent transcription and prevents active demethylation of DNA. Both isoforms stimulate DNA replication of the adenovirus genome complexed with viral core proteins; however, isoform 2 specific activity is higher.

Mus musculus (taxid: 10090)

>sp|Q63945|SET_RAT Protein SET OS=Rattus norvegicus GN=Set PE=1 SV=2

 Score =  179 bits (453), Expect = 2e-44,   Method: Compositional matrix adjust.
 Identities = 88/196 (44%), Positives = 133/196 (67%), Gaps = 9/196 (4%)

Query: 26  SIEKLQEIQDELEKINEEASEKVLEVEQKYSEIRKPVYDKRNDIIKSIPDFWLTAFISHP 85
           +IE + E+Q+E++++NE+ASE++L+VEQKY+++R+P + KR+++I  IP+FW+T F++HP
Sbjct: 43  AIEHIDEVQNEIDRLNEQASEEILKVEQKYNKLRQPFFQKRSELIAKIPNFWVTTFVNHP 102

Query: 86  ALGELLSEEDQKIFRYLSSLEVEDFKDVKSGYSITFNFSPNPYFEDNKLTKTFTFLDDDG 145
            +  LL EED++   YL+ +EV +F+D+KSGY I F F  NPYFE+  L+K F  L++ G
Sbjct: 103 QVSALLGEEDEEALHYLTRVEVTEFEDIKSGYRIDFYFDENPYFENKVLSKEF-HLNESG 161

Query: 146 SMKITATSIKWKEGMGIP--NGVNHEKKGNKRPLAE-ESFFTWFSDTQEKDTIDGIQDEV 202
                +T IKWK G  +   +     K   KR   E ESFFTWF+D       D   DE+
Sbjct: 162 DPSSKSTEIKWKSGKDLTKRSSQTQNKASRKRQHEEPESFFTWFTDHS-----DAGADEL 216

Query: 203 AEIIKEDLWPNPLTYF 218
            E+IK+D+WPNPL Y+
Sbjct: 217 GEVIKDDIWPNPLQYY 232

Multitasking protein, involved in apoptosis, transcription, nucleosome assembly and histone binding. Isoform 2 anti-apoptotic activity is mediated by inhibition of the GZMA-activated DNase, NME1. In the course of cytotoxic T-lymphocyte (CTL)-induced apoptosis, GZMA cleaves SET, disrupting its binding to NME1 and releasing NME1 inhibition. Isoform 1 and isoform 2 are potent inhibitors of protein phosphatase 2A. Isoform 1 and isoform 2 inhibit EP300/CREBBP and PCAF-mediated acetylation of histones (HAT) and nucleosomes, most probably by masking the accessibility of lysines of histones to the acetylases. The predominant target for inhibition is histone H4. HAT inhibition leads to silencing of HAT-dependent transcription and prevents active demethylation of DNA. Both isoforms stimulate DNA replication of the adenovirus genome complexed with viral core proteins; however, isoform 2 specific activity is higher.

Rattus norvegicus (taxid: 10116)

>sp|Q8N831|TSYL6_HUMAN Testis-specific Y-encoded-like protein 6 OS=Homo sapiens GN=TSPYL6 PE=2 SV=1

 Score =  138 bits (347), Expect = 4e-32,   Method: Compositional matrix adjust.
 Identities = 72/194 (37%), Positives = 114/194 (58%), Gaps = 12/194 (6%)

Query: 25  LSIEKLQEIQDELEKINEEASEKVLEVEQKYSEIRKPVYDKRNDIIKSIPDFWLTAFISH 84
           L +  L+ IQ EL+ +N EA   +L+VE+++ +I +   ++RNDII++IP FW+TAF  H
Sbjct: 200 LHLNPLESIQLELDSVNAEADRALLQVERRFGQIHEYYLEQRNDIIRNIPGFWVTAFRHH 259

Query: 85  PALGELLSEEDQKIFRYLSSLEVEDFKDVKSGYSITFNFSPNPYFEDNKLTKTFTFLDDD 144
           P L  ++  +D ++  YL++LEV++ +  ++G    F F  NPYF +  + K +  +   
Sbjct: 260 PQLSAMIRGQDAEMLSYLTNLEVKELRHPRTGCKFKFFFQRNPYFRNKLIVKVYE-VRSF 318

Query: 145 GSMKITATSIKWKEGMGIPNGVNHEKKGNKRPLAEESFFTWFSDTQEKDTIDGIQDEVAE 204
           G +   +T I W+ G G P    H    N+  +   SFFTWFSD    ++     D +A+
Sbjct: 319 GQVVSFSTLIMWRRGHG-PQSFIHR---NRHVIC--SFFTWFSDHSLPES-----DRIAQ 367

Query: 205 IIKEDLWPNPLTYF 218
           IIKEDLW NPL Y+
Sbjct: 368 IIKEDLWSNPLQYY 381

Homo sapiens (taxid: 9606)

>sp|Q9H2G4|TSYL2_HUMAN Testis-specific Y-encoded-like protein 2 OS=Homo sapiens GN=TSPYL2 PE=1 SV=1

 Score =  136 bits (342), Expect = 2e-31,   Method: Compositional matrix adjust.
 Identities = 76/206 (36%), Positives = 123/206 (59%), Gaps = 16/206 (7%)

Query: 13  EENAEQIDSELVLSIEKLQEIQDELEKINEEASEKVLEVEQKYSEIRKPVYDKRNDIIKS 72
           E NAE+++S L    + L++IQ +LE +N +A +  L +++K+ ++R+P  ++R+ II+ 
Sbjct: 206 ERNAERMESIL----QALEDIQLDLEAVNIKAGKAFLRLKRKFIQMRRPFLERRDLIIQH 261

Query: 73  IPDFWLTAFISHPALGELLSEEDQKIFRYLSSLEVEDFKDVKSGYSITFNFSPNPYFEDN 132
           IP FW+ AF++HP +  L++  D+ IFRYL++L+V+D + +  GY +   F  NPYF + 
Sbjct: 262 IPGFWVKAFLNHPRISILINRRDEDIFRYLTNLQVQDLRHISMGYKMKLYFQTNPYFTNM 321

Query: 133 KLTKTFTFLDDDGSMKITATSIKWKEGMGIPNGVNHEKKGNKRPLAEESFFTWFSDTQEK 192
            + K F   +  G +   +T I+W  G   P    H   GN+   A  SFF+WFS+    
Sbjct: 322 VIVKEFQ-RNRSGRLVSHSTPIRWHRGQE-PQARRH---GNQD--ASHSFFSWFSNHSLP 374

Query: 193 DTIDGIQDEVAEIIKEDLWPNPLTYF 218
           +      D +AEIIK DLW NPL Y+
Sbjct: 375 EA-----DRIAEIIKNDLWVNPLRYY 395

Part of the CASK/TRB1/TSPYL2 transcriptional complex which modulates gene expression in response to neuronal synaptic activity, probably by facilitating nucleosome assembly. May inhibit cell proliferation by inducing p53-dependent CDKN1A expression.

Homo sapiens (taxid: 9606)

>sp|Q5R5G8|TSYL1_PONAB Testis-specific Y-encoded-like protein 1 OS=Pongo abelii GN=TSPYL1 PE=2 SV=1

 Score =  135 bits (340), Expect = 3e-31,   Method: Compositional matrix adjust.
 Identities = 70/197 (35%), Positives = 114/197 (57%), Gaps = 16/197 (8%)

Query: 24  VLSIEKLQEIQDELEKINEEASEKVLEVEQKYSEIRKPVYDKRNDIIKSIPDFWLTAFIS 83
            L ++ L+ IQ EL+ +N +A     ++E K+  +R+   ++RN II++IP FW+TAF +
Sbjct: 227 ALRMDPLEAIQLELDTVNAQADRAFQQLEHKFGRMRRHYLERRNYIIQNIPGFWMTAFRN 286

Query: 84  HPALGELLSEEDQKIFRYLSSLEVEDFKDVKSGYSITFNFSPNPYFEDNKLTKTFTFLDD 143
           HP L  ++  +D ++ RY+++LEV++ +  ++G    F F  NPYF +  + K +  +  
Sbjct: 287 HPQLSAMIRGQDAEMLRYITNLEVKELRHPRTGCKFKFFFRRNPYFRNKLIVKEYE-VRS 345

Query: 144 DGSMKITATSIKWKEGMGIPNGVNHEKKGNKRPLAE--ESFFTWFSDTQEKDTIDGIQDE 201
            G +   +T I W+ G        HE +   R   +   SFFTWFSD    ++     D+
Sbjct: 346 SGRVVSLSTPIIWRRG--------HEPQSFIRRNQDLICSFFTWFSDHSLPES-----DK 392

Query: 202 VAEIIKEDLWPNPLTYF 218
           +AEIIKEDLWPNPL Y+
Sbjct: 393 IAEIIKEDLWPNPLQYY 409

Pongo abelii (taxid: 9601)

>sp|Q9UJ04|TSYL4_HUMAN Testis-specific Y-encoded-like protein 4 OS=Homo sapiens GN=TSPYL4 PE=2 SV=2

 Score =  135 bits (339), Expect = 3e-31,   Method: Compositional matrix adjust.
 Identities = 69/193 (35%), Positives = 109/193 (56%), Gaps = 10/193 (5%)

Query: 26  SIEKLQEIQDELEKINEEASEKVLEVEQKYSEIRKPVYDKRNDIIKSIPDFWLTAFISHP 85
            ++ L+ I  EL  +N +A    L++E+K+  +R+    +R+ II++IP FW+TAF +HP
Sbjct: 203 CMDSLEAIDQELSNVNAQADRAFLQLERKFGRMRRLHMQRRSFIIQNIPGFWVTAFRNHP 262

Query: 86  ALGELLSEEDQKIFRYLSSLEVEDFKDVKSGYSITFNFSPNPYFEDNKLTKTFTFLDDDG 145
            L  ++S +D+ + RY+ +LEVE+ K  ++G    F F  NPYF +  L K +      G
Sbjct: 263 QLSPMISGQDEDMLRYMINLEVEELKHPRAGCKFKFIFQGNPYFRNEGLVKEYE-RRSSG 321

Query: 146 SMKITATSIKWKEGMGIPNGVNHEKKGNKRPLAEESFFTWFSDTQEKDTIDGIQDEVAEI 205
            +   +T I+W  G      ++  ++GN  P    SFF WFSD    +      D +AEI
Sbjct: 322 RVVSLSTPIRWHRGQDPQAHIHRNREGNTIP----SFFNWFSDHSLLEF-----DRIAEI 372

Query: 206 IKEDLWPNPLTYF 218
           IK +LWPNPL Y+
Sbjct: 373 IKGELWPNPLQYY 385

Homo sapiens (taxid: 9606)

>sp|Q9H0U9|TSYL1_HUMAN Testis-specific Y-encoded-like protein 1 OS=Homo sapiens GN=TSPYL1 PE=1 SV=3

 Score =  135 bits (339), Expect = 3e-31,   Method: Compositional matrix adjust.
 Identities = 70/197 (35%), Positives = 114/197 (57%), Gaps = 16/197 (8%)

Query: 24  VLSIEKLQEIQDELEKINEEASEKVLEVEQKYSEIRKPVYDKRNDIIKSIPDFWLTAFIS 83
            L ++ L+ IQ EL+ +N +A     ++E K+  +R+   ++RN II++IP FW+TAF +
Sbjct: 226 ALRMDPLEAIQLELDTVNAQADRAFQQLEHKFGRMRRHYLERRNYIIQNIPGFWMTAFRN 285

Query: 84  HPALGELLSEEDQKIFRYLSSLEVEDFKDVKSGYSITFNFSPNPYFEDNKLTKTFTFLDD 143
           HP L  ++  +D ++ RY+++LEV++ +  ++G    F F  NPYF +  + K +  +  
Sbjct: 286 HPQLSAMIRGQDAEMLRYITNLEVKELRHPRTGCKFKFFFRRNPYFRNKLIVKEYE-VRS 344

Query: 144 DGSMKITATSIKWKEGMGIPNGVNHEKKGNKRPLAE--ESFFTWFSDTQEKDTIDGIQDE 201
            G +   +T I W+ G        HE +   R   +   SFFTWFSD    ++     D+
Sbjct: 345 SGRVVSLSTPIIWRRG--------HEPQSFIRRNQDLICSFFTWFSDHSLPES-----DK 391

Query: 202 VAEIIKEDLWPNPLTYF 218
           +AEIIKEDLWPNPL Y+
Sbjct: 392 IAEIIKEDLWPNPLQYY 408

Homo sapiens (taxid: 9606)

>sp|O88852|TSYL1_MOUSE Testis-specific Y-encoded-like protein 1 OS=Mus musculus GN=Tspyl1 PE=2 SV=1

 Score =  134 bits (338), Expect = 5e-31,   Method: Compositional matrix adjust.
 Identities = 72/191 (37%), Positives = 109/191 (57%), Gaps = 16/191 (8%)

Query: 30  LQEIQDELEKINEEASEKVLEVEQKYSEIRKPVYDKRNDIIKSIPDFWLTAFISHPALGE 89
           L+ IQ EL+ +N +A      +EQK+  +R+   ++RN II++IP FW+TAF +HP L  
Sbjct: 174 LEAIQLELDTVNAQADRAFQHLEQKFGRMRRHYLERRNYIIQNIPGFWMTAFRNHPQLSA 233

Query: 90  LLSEEDQKIFRYLSSLEVEDFKDVKSGYSITFNFSPNPYFEDNKLTKTFTFLDDDGSMKI 149
           ++   D ++ RY++SLEV++ +  K+G    F F  NPYF +  + K +  +   G +  
Sbjct: 234 MIRGRDAEMLRYVTSLEVKELRHPKTGCKFKFFFRRNPYFRNKLIVKEYE-VRSSGRVVS 292

Query: 150 TATSIKWKEGMGIPNGVNHEKKGNKRPLAE--ESFFTWFSDTQEKDTIDGIQDEVAEIIK 207
            +T I W+ G        HE +   R   +   SFFTWFSD    ++     D +AEIIK
Sbjct: 293 LSTPIIWRRG--------HEPQSFIRRNQDLICSFFTWFSDHSLPES-----DRIAEIIK 339

Query: 208 EDLWPNPLTYF 218
           EDLWPNPL Y+
Sbjct: 340 EDLWPNPLQYY 350

Mus musculus (taxid: 10090)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	243
225456743	268	PREDICTED: protein SET [Vitis vinifera]	0.901	0.817	0.812	2e-99
225452785	255	PREDICTED: protein SET [Vitis vinifera]	0.901	0.858	0.786	7e-96
6730705	255	Putative phospatase 2A inhibitor [Arabid	0.901	0.858	0.800	9e-96
356508564	261	PREDICTED: protein SET-like [Glycine max	0.901	0.839	0.792	1e-95
356516792	263	PREDICTED: protein SET-like isoform 1 [G	0.901	0.832	0.797	1e-95
296082895	253	unnamed protein product [Vitis vinifera]	0.901	0.865	0.786	2e-95
255638203	263	unknown [Glycine max]	0.901	0.832	0.792	9e-95
26451105	228	unknown protein [Arabidopsis thaliana] g	0.901	0.960	0.797	2e-94
18394656	256	template-activating factor I [Arabidopsi	0.901	0.855	0.797	2e-94
388492976	261	unknown [Lotus japonicus]	0.901	0.839	0.783	7e-94

>gi|225456743|ref|XP_002275632.1| PREDICTED: protein SET [Vitis vinifera] gi|297733991|emb|CBI15238.3| unnamed protein product [Vitis vinifera]

 Score =  368 bits (944), Expect = 2e-99,   Method: Compositional matrix adjust.
 Identities = 182/224 (81%), Positives = 205/224 (91%), Gaps = 5/224 (2%)

Query: 1   MVADKGKKTKV----EEENAEQIDSELVLSIEKLQEIQDELEKINEEASEKVLEVEQKYS 56
           MVADKGKK K     EE N++ ID +LVLSIEKLQEIQD+LEKINEEAS+KVLEVEQKY+
Sbjct: 1   MVADKGKKLKQSEKEEEVNSDHIDGDLVLSIEKLQEIQDDLEKINEEASDKVLEVEQKYN 60

Query: 57  EIRKPVYDKRNDIIKSIPDFWLTAFISHPALGELLSEEDQKIFRYLSSLEVEDFKDVKSG 116
           EIRKP+YDKRNDIIKSIPDFWLTAF+SHPALG+LLSEEDQKIF+YLSSLEVEDFKDVKSG
Sbjct: 61  EIRKPIYDKRNDIIKSIPDFWLTAFLSHPALGDLLSEEDQKIFKYLSSLEVEDFKDVKSG 120

Query: 117 YSITFNFSPNPYFEDNKLTKTFTFLDDDGSMKITATSIKWKEGMGIPNGVNHEKKGNKRP 176
           YSITFNF+PNP+FED KL KTFTFL D+G  KI+ TSIKWK+GMGIPNGVNHEKKGNKRP
Sbjct: 121 YSITFNFNPNPFFEDTKLKKTFTFL-DEGITKISVTSIKWKDGMGIPNGVNHEKKGNKRP 179

Query: 177 LAEESFFTWFSDTQEKDTIDGIQDEVAEIIKEDLWPNPLTYFNN 220
           +A+ SFF+WFS+TQ+KD +D I DE+AEIIKEDLWPNPLTYFN+
Sbjct: 180 IADASFFSWFSETQQKDIMDDIHDEIAEIIKEDLWPNPLTYFNS 223

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225452785|ref|XP_002283325.1| PREDICTED: protein SET [Vitis vinifera]

 Score =  355 bits (912), Expect = 7e-96,   Method: Compositional matrix adjust.
 Identities = 177/225 (78%), Positives = 200/225 (88%), Gaps = 6/225 (2%)

Query: 1   MVADKGKKTKVE----EENAEQIDSELVLSIEKLQEIQDELEKINEEASEKVLEVEQKYS 56
           MVADKGKK+KV     E++A+ ID ELVLSIEKLQE+QDELEK+NEEAS+KVLEVEQKY+
Sbjct: 1   MVADKGKKSKVSDRIVEDDADHIDGELVLSIEKLQELQDELEKVNEEASDKVLEVEQKYN 60

Query: 57  EIRKPVYDKRNDIIKSIPDFWLTAFISHPALGELLSEEDQKIFRYLSSLEVEDFKDVKSG 116
           EIR+PVY KRN+IIKSIPDFWLTAF+SHPAL +LLSEEDQKIF+YL SLEVEDFKDVKSG
Sbjct: 61  EIRRPVYVKRNEIIKSIPDFWLTAFLSHPALCDLLSEEDQKIFKYLDSLEVEDFKDVKSG 120

Query: 117 YSITFNFSPNPYFEDNKLTKTFTFLDDDGSMKITATSIKWKEGMGIPNGVNHEKKGNKRP 176
           YSI FNF+ NPYFED KLTKTFTF  D+G+ KIT T+IKWKEGMG  NGVNH+KK NKRP
Sbjct: 121 YSIAFNFNQNPYFEDTKLTKTFTFF-DEGTTKITGTAIKWKEGMGASNGVNHDKK-NKRP 178

Query: 177 LAEESFFTWFSDTQEKDTIDGIQDEVAEIIKEDLWPNPLTYFNNV 221
            AEESFF WFS+TQ+KD ++G+QDEVAEIIKEDLWPNPL YFNN 
Sbjct: 179 FAEESFFAWFSETQQKDIMEGLQDEVAEIIKEDLWPNPLKYFNNA 223

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|6730705|gb|AAF27100.1|AC011809_9 Putative phospatase 2A inhibitor [Arabidopsis thaliana]

 Score =  355 bits (911), Expect = 9e-96,   Method: Compositional matrix adjust.
 Identities = 177/221 (80%), Positives = 200/221 (90%), Gaps = 2/221 (0%)

Query: 1   MVADKGKKTKVEEENAEQIDSELVLSIEKLQEIQDELEKINEEASEKVLEVEQKYSEIRK 60
           MV DK KK K EEEN EQID+ELVLSIEKLQEIQD+LEKINE+AS++VLEVEQKY+ IRK
Sbjct: 1   MVTDKSKKAKTEEENVEQIDAELVLSIEKLQEIQDDLEKINEKASDEVLEVEQKYNVIRK 60

Query: 61  PVYDKRNDIIKSIPDFWLTAFISHPALGELLSEEDQKIFRYLSSLEVEDFKDVKSGYSIT 120
           PVYDKRN+IIK+IPDFWLTAF+SHPALGELL+EEDQKIF+YLSSL+VED KDVKSGYSIT
Sbjct: 61  PVYDKRNEIIKTIPDFWLTAFLSHPALGELLTEEDQKIFKYLSSLDVEDAKDVKSGYSIT 120

Query: 121 FNFSPNPYFEDNKLTKTFTFLDDDGSMKITATSIKWKEGMGIPNGVNHEKKGNKRPLAEE 180
           F+F+PNP+FED KLTKTFTFL ++G+ KITAT IKWKEG G+ NGVNHEK GNKR L EE
Sbjct: 121 FSFNPNPFFEDGKLTKTFTFL-EEGTTKITATPIKWKEGKGLANGVNHEKNGNKRALPEE 179

Query: 181 SFFTWFSDTQEKDTI-DGIQDEVAEIIKEDLWPNPLTYFNN 220
           SFFTWFSD Q K+ + D +QDEVA+IIKEDLWPNPLTYFNN
Sbjct: 180 SFFTWFSDAQHKEDVEDEMQDEVADIIKEDLWPNPLTYFNN 220

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356508564|ref|XP_003523025.1| PREDICTED: protein SET-like [Glycine max]

 Score =  355 bits (910), Expect = 1e-95,   Method: Compositional matrix adjust.
 Identities = 176/222 (79%), Positives = 200/222 (90%), Gaps = 3/222 (1%)

Query: 1   MVADKGKKTKVEE--ENAEQIDSELVLSIEKLQEIQDELEKINEEASEKVLEVEQKYSEI 58
           MVAD+ KK KV +  EN ++ID ELVLSIEKLQEIQDELEKINEEAS+KVLE+EQKY+EI
Sbjct: 1   MVADRSKKPKVSDKGENLDEIDGELVLSIEKLQEIQDELEKINEEASDKVLEIEQKYNEI 60

Query: 59  RKPVYDKRNDIIKSIPDFWLTAFISHPALGELLSEEDQKIFRYLSSLEVEDFKDVKSGYS 118
           RKPVYDKRNDII +IPDFWLTAF+SHPALG+LL+EEDQKIF+YLSSLEVEDFKDVKSGYS
Sbjct: 61  RKPVYDKRNDIINAIPDFWLTAFLSHPALGDLLNEEDQKIFKYLSSLEVEDFKDVKSGYS 120

Query: 119 ITFNFSPNPYFEDNKLTKTFTFLDDDGSMKITATSIKWKEGMGIPNGVNHEKKGNKRPLA 178
           ITFNF+ NPYFED KL KT+TFL ++G+ K+TAT IKWKEG GIPNGVNHEKKGNKR   
Sbjct: 121 ITFNFNANPYFEDTKLVKTYTFL-EEGTTKVTATPIKWKEGKGIPNGVNHEKKGNKRAPT 179

Query: 179 EESFFTWFSDTQEKDTIDGIQDEVAEIIKEDLWPNPLTYFNN 220
           + SFF+WFSDT++KD ID I DEVAE+IK+DLWPNPLTYFNN
Sbjct: 180 DVSFFSWFSDTEQKDDIDDIHDEVAELIKDDLWPNPLTYFNN 221

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356516792|ref|XP_003527077.1| PREDICTED: protein SET-like isoform 1 [Glycine max]

 Score =  355 bits (910), Expect = 1e-95,   Method: Compositional matrix adjust.
 Identities = 177/222 (79%), Positives = 200/222 (90%), Gaps = 3/222 (1%)

Query: 1   MVADKGKKTKVEE--ENAEQIDSELVLSIEKLQEIQDELEKINEEASEKVLEVEQKYSEI 58
           MVAD+ KK KV E  EN ++ID ELVLSIEKLQEIQDELEKINEEAS+KVLE+EQKY+EI
Sbjct: 1   MVADRSKKPKVSEKGENLDEIDGELVLSIEKLQEIQDELEKINEEASDKVLEIEQKYNEI 60

Query: 59  RKPVYDKRNDIIKSIPDFWLTAFISHPALGELLSEEDQKIFRYLSSLEVEDFKDVKSGYS 118
           RKPVYDKRNDIIK+IPDFWLTAF+SHPALG+LL+EEDQKIF+YLSSLEVEDFKDVKSGYS
Sbjct: 61  RKPVYDKRNDIIKAIPDFWLTAFLSHPALGDLLNEEDQKIFKYLSSLEVEDFKDVKSGYS 120

Query: 119 ITFNFSPNPYFEDNKLTKTFTFLDDDGSMKITATSIKWKEGMGIPNGVNHEKKGNKRPLA 178
           ITFNF+ NPYFED KL KT+TFL ++G+ K+TAT IKWKEG GIPNGVNHEKK NKR   
Sbjct: 121 ITFNFNANPYFEDTKLVKTYTFL-EEGTTKVTATPIKWKEGKGIPNGVNHEKKRNKRAPT 179

Query: 179 EESFFTWFSDTQEKDTIDGIQDEVAEIIKEDLWPNPLTYFNN 220
           + SFF+WFSDT++KD ID I DEVAE+IK+DLWPNPLTYFNN
Sbjct: 180 DVSFFSWFSDTEQKDDIDDIHDEVAELIKDDLWPNPLTYFNN 221

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|296082895|emb|CBI22196.3| unnamed protein product [Vitis vinifera]

 Score =  354 bits (909), Expect = 2e-95,   Method: Compositional matrix adjust.
 Identities = 177/225 (78%), Positives = 200/225 (88%), Gaps = 6/225 (2%)

Query: 1   MVADKGKKTKVE----EENAEQIDSELVLSIEKLQEIQDELEKINEEASEKVLEVEQKYS 56
           MVADKGKK+KV     E++A+ ID ELVLSIEKLQE+QDELEK+NEEAS+KVLEVEQKY+
Sbjct: 1   MVADKGKKSKVSDRIVEDDADHIDGELVLSIEKLQELQDELEKVNEEASDKVLEVEQKYN 60

Query: 57  EIRKPVYDKRNDIIKSIPDFWLTAFISHPALGELLSEEDQKIFRYLSSLEVEDFKDVKSG 116
           EIR+PVY KRN+IIKSIPDFWLTAF+SHPAL +LLSEEDQKIF+YL SLEVEDFKDVKSG
Sbjct: 61  EIRRPVYVKRNEIIKSIPDFWLTAFLSHPALCDLLSEEDQKIFKYLDSLEVEDFKDVKSG 120

Query: 117 YSITFNFSPNPYFEDNKLTKTFTFLDDDGSMKITATSIKWKEGMGIPNGVNHEKKGNKRP 176
           YSI FNF+ NPYFED KLTKTFTF  D+G+ KIT T+IKWKEGMG  NGVNH+KK NKRP
Sbjct: 121 YSIAFNFNQNPYFEDTKLTKTFTFF-DEGTTKITGTAIKWKEGMGASNGVNHDKK-NKRP 178

Query: 177 LAEESFFTWFSDTQEKDTIDGIQDEVAEIIKEDLWPNPLTYFNNV 221
            AEESFF WFS+TQ+KD ++G+QDEVAEIIKEDLWPNPL YFNN 
Sbjct: 179 FAEESFFAWFSETQQKDIMEGLQDEVAEIIKEDLWPNPLKYFNNA 223

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255638203|gb|ACU19415.1| unknown [Glycine max]

 Score =  352 bits (903), Expect = 9e-95,   Method: Compositional matrix adjust.
 Identities = 176/222 (79%), Positives = 199/222 (89%), Gaps = 3/222 (1%)

Query: 1   MVADKGKKTKVEE--ENAEQIDSELVLSIEKLQEIQDELEKINEEASEKVLEVEQKYSEI 58
           MVAD+ KK KV E  EN ++ID ELVLSIEKLQEIQDELEKINEEAS+KVLE+EQKY+EI
Sbjct: 1   MVADRSKKPKVSEKGENLDEIDGELVLSIEKLQEIQDELEKINEEASDKVLEIEQKYNEI 60

Query: 59  RKPVYDKRNDIIKSIPDFWLTAFISHPALGELLSEEDQKIFRYLSSLEVEDFKDVKSGYS 118
           RKPVYDKRNDIIK+IPDFWLTAF+SHPALG+LL+EEDQKIF+YLSSLEVEDFKDVKSGYS
Sbjct: 61  RKPVYDKRNDIIKTIPDFWLTAFLSHPALGDLLNEEDQKIFKYLSSLEVEDFKDVKSGYS 120

Query: 119 ITFNFSPNPYFEDNKLTKTFTFLDDDGSMKITATSIKWKEGMGIPNGVNHEKKGNKRPLA 178
           ITFNF+ NPYFED KL KT+TFL ++G+ K+TAT IKWKEG  IPNGVNHEKK NKR   
Sbjct: 121 ITFNFNANPYFEDTKLVKTYTFL-EEGTTKVTATPIKWKEGKDIPNGVNHEKKRNKRAPT 179

Query: 179 EESFFTWFSDTQEKDTIDGIQDEVAEIIKEDLWPNPLTYFNN 220
           + SFF+WFSDT++KD ID I DEVAE+IK+DLWPNPLTYFNN
Sbjct: 180 DVSFFSWFSDTEQKDDIDDIHDEVAELIKDDLWPNPLTYFNN 221

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|26451105|dbj|BAC42657.1| unknown protein [Arabidopsis thaliana] gi|28950777|gb|AAO63312.1| At1g18800 [Arabidopsis thaliana]

 Score =  351 bits (900), Expect = 2e-94,   Method: Compositional matrix adjust.
 Identities = 177/222 (79%), Positives = 200/222 (90%), Gaps = 3/222 (1%)

Query: 1   MVADKGKKTKVEEENAEQIDSELVLSIEKLQEIQDELEKINEEASEKVLEVEQKYSEIRK 60
           MV DK KK K EEEN EQID+ELVLSIEKLQEIQD+LEKINE+AS++VLEVEQKY+ IRK
Sbjct: 1   MVTDKSKKAKTEEENVEQIDAELVLSIEKLQEIQDDLEKINEKASDEVLEVEQKYNVIRK 60

Query: 61  PVYDKRNDIIKSIPDFWLTAFISHPALGELLSEEDQKIFRYLSSLEVEDFKDVKSGYSIT 120
           PVYDKRN+IIK+IPDFWLTAF+SHPALGELL+EEDQKIF+YLSSL+VED KDVKSGYSIT
Sbjct: 61  PVYDKRNEIIKTIPDFWLTAFLSHPALGELLTEEDQKIFKYLSSLDVEDAKDVKSGYSIT 120

Query: 121 FNFSPNPYFEDNKLTKTFTFLDDDGSMKITATSIKWKEGMGIPNGVNHEKKGNKRPLAEE 180
           F+F+PNP+FED KLTKTFTFL ++G+ KITAT IKWKEG G+ NGVNHEK GNKR L EE
Sbjct: 121 FSFNPNPFFEDGKLTKTFTFL-EEGTTKITATPIKWKEGKGLANGVNHEKNGNKRALPEE 179

Query: 181 SFFTWFSDTQEKDTI-DGIQDE-VAEIIKEDLWPNPLTYFNN 220
           SFFTWFSD Q K+ + D +QDE VA+IIKEDLWPNPLTYFNN
Sbjct: 180 SFFTWFSDAQHKEDVEDEMQDEQVADIIKEDLWPNPLTYFNN 221

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|18394656|ref|NP_564063.1| template-activating factor I [Arabidopsis thaliana] gi|21555241|gb|AAM63812.1| putative SET protein, phospatase 2A inhibitor [Arabidopsis thaliana] gi|332191644|gb|AEE29765.1| template-activating factor I [Arabidopsis thaliana]

 Score =  350 bits (899), Expect = 2e-94,   Method: Compositional matrix adjust.
 Identities = 177/222 (79%), Positives = 200/222 (90%), Gaps = 3/222 (1%)

Query: 1   MVADKGKKTKVEEENAEQIDSELVLSIEKLQEIQDELEKINEEASEKVLEVEQKYSEIRK 60
           MV DK KK K EEEN EQID+ELVLSIEKLQEIQD+LEKINE+AS++VLEVEQKY+ IRK
Sbjct: 1   MVTDKSKKAKTEEENVEQIDAELVLSIEKLQEIQDDLEKINEKASDEVLEVEQKYNVIRK 60

Query: 61  PVYDKRNDIIKSIPDFWLTAFISHPALGELLSEEDQKIFRYLSSLEVEDFKDVKSGYSIT 120
           PVYDKRN+IIK+IPDFWLTAF+SHPALGELL+EEDQKIF+YLSSL+VED KDVKSGYSIT
Sbjct: 61  PVYDKRNEIIKTIPDFWLTAFLSHPALGELLTEEDQKIFKYLSSLDVEDAKDVKSGYSIT 120

Query: 121 FNFSPNPYFEDNKLTKTFTFLDDDGSMKITATSIKWKEGMGIPNGVNHEKKGNKRPLAEE 180
           F+F+PNP+FED KLTKTFTFL ++G+ KITAT IKWKEG G+ NGVNHEK GNKR L EE
Sbjct: 121 FSFNPNPFFEDGKLTKTFTFL-EEGTTKITATPIKWKEGKGLANGVNHEKNGNKRALPEE 179

Query: 181 SFFTWFSDTQEKDTI-DGIQDE-VAEIIKEDLWPNPLTYFNN 220
           SFFTWFSD Q K+ + D +QDE VA+IIKEDLWPNPLTYFNN
Sbjct: 180 SFFTWFSDAQHKEDVEDEMQDEQVADIIKEDLWPNPLTYFNN 221

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|388492976|gb|AFK34554.1| unknown [Lotus japonicus]

 Score =  349 bits (895), Expect = 7e-94,   Method: Compositional matrix adjust.
 Identities = 174/222 (78%), Positives = 197/222 (88%), Gaps = 3/222 (1%)

Query: 1   MVADKGKKTKVEE--ENAEQIDSELVLSIEKLQEIQDELEKINEEASEKVLEVEQKYSEI 58
           MVADK KK KV E  EN E+ID +LVLSIEKLQEIQDELEKINEEAS+KVLE+EQKY+EI
Sbjct: 1   MVADKTKKQKVSEKSENPEEIDGDLVLSIEKLQEIQDELEKINEEASDKVLEIEQKYNEI 60

Query: 59  RKPVYDKRNDIIKSIPDFWLTAFISHPALGELLSEEDQKIFRYLSSLEVEDFKDVKSGYS 118
           RKPVYDKR+DIIK+IPDFWLTAF+SHPALGELL++EDQKIF+YL+SLEVED+KDVKSGYS
Sbjct: 61  RKPVYDKRSDIIKAIPDFWLTAFLSHPALGELLNDEDQKIFKYLTSLEVEDYKDVKSGYS 120

Query: 119 ITFNFSPNPYFEDNKLTKTFTFLDDDGSMKITATSIKWKEGMGIPNGVNHEKKGNKRPLA 178
           ITFNF PNPYFED KL KTFTFL ++G  K+TAT IKWKEG GIPNGV HEKKGNKR   
Sbjct: 121 ITFNFKPNPYFEDAKLVKTFTFL-EEGITKVTATPIKWKEGKGIPNGVAHEKKGNKRTPV 179

Query: 179 EESFFTWFSDTQEKDTIDGIQDEVAEIIKEDLWPNPLTYFNN 220
           + SFFTWF+ T++KD +D I DEVAE+IK+D WPNPLTYFNN
Sbjct: 180 DVSFFTWFAHTEQKDDMDNIHDEVAELIKDDFWPNPLTYFNN 221

Source: Lotus japonicus

Species: Lotus japonicus

Genus: Lotus

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	243
TAIR|locus:2034995	256	NRP2 "AT1G18800" [Arabidopsis	0.901	0.855	0.797	5.5e-93
TAIR|locus:2019075	264	NRP1 "AT1G74560" [Arabidopsis	0.864	0.795	0.760	3.4e-84
ZFIN|ZDB-GENE-030131-433	275	setb "SET translocation (myelo	0.810	0.716	0.444	8.8e-47
UNIPROTKB|F1RR69	289	SET "Uncharacterized protein"	0.827	0.695	0.433	3e-46
UNIPROTKB|F2Z4L4	277	SET "Uncharacterized protein"	0.810	0.711	0.435	6.2e-46
FB|FBgn0014879	269	Set "Set" [Drosophila melanoga	0.827	0.747	0.437	7.9e-46
UNIPROTKB|Q5VXV2	268	SET "Protein SET" [Homo sapien	0.798	0.723	0.438	7.9e-46
MGI|MGI:1860267	289	Set "SET nuclear oncogene" [Mu	0.835	0.702	0.425	1e-45
RGD|1307467	289	Set "SET nuclear oncogene" [Ra	0.835	0.702	0.425	1e-45
UNIPROTKB|Q01105	290	SET "Protein SET" [Homo sapien	0.769	0.644	0.448	1.3e-45

TAIR|locus:2034995 NRP2 "AT1G18800" [Arabidopsis thaliana (taxid:3702)]

 Score = 926 (331.0 bits), Expect = 5.5e-93, P = 5.5e-93
 Identities = 177/222 (79%), Positives = 200/222 (90%)

Query:     1 MVADKGKKTKVEEENAEQIDSELVLSIEKLQEIQDELEKINEEASEKVLEVEQKYSEIRK 60
             MV DK KK K EEEN EQID+ELVLSIEKLQEIQD+LEKINE+AS++VLEVEQKY+ IRK
Sbjct:     1 MVTDKSKKAKTEEENVEQIDAELVLSIEKLQEIQDDLEKINEKASDEVLEVEQKYNVIRK 60

Query:    61 PVYDKRNDIIKSIPDFWLTAFISHPALGELLSEEDQKIFRYLSSLEVEDFKDVKSGYSIT 120
             PVYDKRN+IIK+IPDFWLTAF+SHPALGELL+EEDQKIF+YLSSL+VED KDVKSGYSIT
Sbjct:    61 PVYDKRNEIIKTIPDFWLTAFLSHPALGELLTEEDQKIFKYLSSLDVEDAKDVKSGYSIT 120

Query:   121 FNFSPNPYFEDNKLTKTFTFLDDDGSMKITATSIKWKEGMGIPNGVNHEKKGNKRPLAEE 180
             F+F+PNP+FED KLTKTFTFL++ G+ KITAT IKWKEG G+ NGVNHEK GNKR L EE
Sbjct:   121 FSFNPNPFFEDGKLTKTFTFLEE-GTTKITATPIKWKEGKGLANGVNHEKNGNKRALPEE 179

Query:   181 SFFTWFSDTQEKDTI-DGIQDE-VAEIIKEDLWPNPLTYFNN 220
             SFFTWFSD Q K+ + D +QDE VA+IIKEDLWPNPLTYFNN
Sbjct:   180 SFFTWFSDAQHKEDVEDEMQDEQVADIIKEDLWPNPLTYFNN 221

GO:0003677 "DNA binding" evidence=ISS

GO:0005634 "nucleus" evidence=ISM;IEA;ISS;IDA

GO:0006334 "nucleosome assembly" evidence=IEA;ISS

GO:0003682 "chromatin binding" evidence=IPI

GO:0005737 "cytoplasm" evidence=IDA

GO:0008283 "cell proliferation" evidence=IGI

GO:0010311 "lateral root formation" evidence=IGI

GO:0030154 "cell differentiation" evidence=IGI

GO:0042393 "histone binding" evidence=IPI

TAIR|locus:2019075 NRP1 "AT1G74560" [Arabidopsis thaliana (taxid:3702)]

 Score = 843 (301.8 bits), Expect = 3.4e-84, P = 3.4e-84
 Identities = 165/217 (76%), Positives = 192/217 (88%)

Query:     1 MVADKGKKTKVEE----ENAEQIDSELVLSIEKLQEIQDELEKINEEASEKVLEVEQKYS 56
             MVADK KK+K+EE    EN EQID+ELVLSIEKLQEIQD+LEKINE+AS++VLEVEQKY+
Sbjct:     1 MVADKSKKSKIEEKGEEENLEQIDAELVLSIEKLQEIQDDLEKINEKASDEVLEVEQKYN 60

Query:    57 EIRKPVYDKRNDIIKSIPDFWLTAFISHPALGELLSEEDQKIFRYLSSLEVEDFKDVKSG 116
              IRKPVYDKRN++I+SIP FW+TAF+SHPALG+LL+EEDQKIF+YL+SLEVED KDVKSG
Sbjct:    61 VIRKPVYDKRNEVIQSIPGFWMTAFLSHPALGDLLTEEDQKIFKYLNSLEVEDAKDVKSG 120

Query:   117 YSITFNFSPNPYFEDNKLTKTFTFLDDDGSMKITATSIKWKEGMGIPNGVNHE-KKGNKR 175
             YSITF+F+ NP+FED KLTKTFTFL++ G+ KITAT IKWKEG G+PNGVNH+ KKGNKR
Sbjct:   121 YSITFHFTSNPFFEDAKLTKTFTFLEE-GTTKITATPIKWKEGKGLPNGVNHDDKKGNKR 179

Query:   176 PLAEESFFTWFSDTQEK-DTIDGIQDEVAEIIKEDLW 211
              L EESFFTWF+D Q K D  D I DEVA+IIKEDLW
Sbjct:   180 ALPEESFFTWFTDAQHKEDAGDEIHDEVADIIKEDLW 216

GO:0003677 "DNA binding" evidence=ISS

GO:0005634 "nucleus" evidence=ISM;IEA;ISS;IDA

GO:0006334 "nucleosome assembly" evidence=IEA;ISS

GO:0005737 "cytoplasm" evidence=IDA

GO:0046686 "response to cadmium ion" evidence=IEP;RCA

GO:0003682 "chromatin binding" evidence=IPI

GO:0008283 "cell proliferation" evidence=IGI

GO:0010311 "lateral root formation" evidence=IGI

GO:0030154 "cell differentiation" evidence=IGI

GO:0042393 "histone binding" evidence=IPI

GO:0005829 "cytosol" evidence=IDA

GO:0006094 "gluconeogenesis" evidence=RCA

GO:0006096 "glycolysis" evidence=RCA

GO:0006333 "chromatin assembly or disassembly" evidence=RCA

GO:0009651 "response to salt stress" evidence=RCA

ZFIN|ZDB-GENE-030131-433 setb "SET translocation (myeloid leukemia-associated) B" [Danio rerio (taxid:7955)]

 Score = 490 (177.5 bits), Expect = 8.8e-47, P = 8.8e-47
 Identities = 93/209 (44%), Positives = 140/209 (66%)

Query:    13 EENAEQIDSELVLSIEKLQEIQDELEKINEEASEKVLEVEQKYSEIRKPVYDKRNDIIKS 72
             +E +E+   E   +IE + E+Q+E++++NE+ASE++L+VEQKY+++R+P + KR+++I  
Sbjct:    21 DETSEKEQQE---AIEHIDEVQNEIDRLNEQASEEILKVEQKYNKLRQPFFQKRSELIAK 77

Query:    73 IPDFWLTAFISHPALGELLSEEDQKIFRYLSSLEVEDFKDVKSGYSITFNFSPNPYFEDN 132
             IP+FW+T F++HP +  LL EED++   YL+ +EV +F+D+KSGY I F F  NPYFE+ 
Sbjct:    78 IPNFWVTTFVNHPQVSALLGEEDEEALHYLTRVEVTEFEDIKSGYRIDFYFDENPYFENK 137

Query:   133 KLTKTFTFLDDDGSMKITATSIKWKEGMGIPN--GVNHEKKGNKRPLAE-ESFFTWFSDT 189
              L+K F  L++ G     +T IKWK G  +    G    K G KR   E ESFFTWF+D 
Sbjct:   138 VLSKEF-HLNESGDPSSKSTEIKWKAGKDLTKRTGQTPNKAGKKRQHEEPESFFTWFTDH 196

Query:   190 QEKDTIDGIQDEVAEIIKEDLWPNPLTYF 218
                   D   DE+ E+IK+D+WPNPL Y+
Sbjct:   197 S-----DAGADELGEVIKDDIWPNPLQYY 220

GO:0005634 "nucleus" evidence=IEA

GO:0006334 "nucleosome assembly" evidence=IEA

UNIPROTKB|F1RR69 SET "Uncharacterized protein" [Sus scrofa (taxid:9823)]

 Score = 485 (175.8 bits), Expect = 3.0e-46, P = 3.0e-46
 Identities = 91/210 (43%), Positives = 138/210 (65%)

Query:    12 EEENAEQIDSELVLSIEKLQEIQDELEKINEEASEKVLEVEQKYSEIRKPVYDKRNDIIK 71
             E  N  + + E   +IE + E+Q+E++++NE+ASE++L+VEQKY+++R+P + KR+++I 
Sbjct:    29 ETSNLPKEEKEQQEAIEHIDEVQNEIDRLNEQASEEILKVEQKYNKLRQPFFQKRSELIA 88

Query:    72 SIPDFWLTAFISHPALGELLSEEDQKIFRYLSSLEVEDFKDVKSGYSITFNFSPNPYFED 131
              IP+FW+T F++HP +  LL EED++   YL+ +EV +F+D+KSGY I F F  NPYFE+
Sbjct:    89 KIPNFWVTTFVNHPQVSALLGEEDEEALHYLTRVEVTEFEDIKSGYRIDFYFDENPYFEN 148

Query:   132 NKLTKTFTFLDDDGSMKITATSIKWKEGMGIP--NGVNHEKKGNKRPLAE-ESFFTWFSD 188
               L+K F  L++ G     +T IKWK G  +   +     K   KR   E ESFFTWF+D
Sbjct:   149 KVLSKEF-HLNESGDPSSKSTEIKWKSGKDLTKRSSQTQNKASRKRQHEEPESFFTWFTD 207

Query:   189 TQEKDTIDGIQDEVAEIIKEDLWPNPLTYF 218
                    D   DE+ E+IK+D+WPNPL Y+
Sbjct:   208 HS-----DAGADELGEVIKDDIWPNPLQYY 232

GO:0048471 "perinuclear region of cytoplasm" evidence=IEA

GO:0045892 "negative regulation of transcription, DNA-dependent" evidence=IEA

GO:0043524 "negative regulation of neuron apoptotic process" evidence=IEA

GO:0043234 "protein complex" evidence=IEA

GO:0005783 "endoplasmic reticulum" evidence=IEA

GO:0005634 "nucleus" evidence=IEA

GO:0006334 "nucleosome assembly" evidence=IEA

UNIPROTKB|F2Z4L4 SET "Uncharacterized protein" [Gallus gallus (taxid:9031)]

 Score = 482 (174.7 bits), Expect = 6.2e-46, P = 6.2e-46
 Identities = 91/209 (43%), Positives = 139/209 (66%)

Query:    13 EENAEQIDSELVLSIEKLQEIQDELEKINEEASEKVLEVEQKYSEIRKPVYDKRNDIIKS 72
             +E +E+   E   +IE + E+Q+E++++NE+ASE++L+VEQKY+++R+P + KR+++I  
Sbjct:    21 DETSEKEQQE---AIEHIDEVQNEIDRLNEQASEEILKVEQKYNKLRQPFFQKRSELIAK 77

Query:    73 IPDFWLTAFISHPALGELLSEEDQKIFRYLSSLEVEDFKDVKSGYSITFNFSPNPYFEDN 132
             IP+FW+T F++HP +  LL EED++   YL+ +EV +F+D+KSGY I F F  NPYFE+ 
Sbjct:    78 IPNFWVTTFVNHPQVSALLGEEDEEALHYLTRVEVTEFEDIKSGYRIDFYFDENPYFENK 137

Query:   133 KLTKTFTFLDDDGSMKITATSIKWKEGMGIP--NGVNHEKKGNKRPLAE-ESFFTWFSDT 189
              L+K F  L++ G     +T IKWK G  +   +     K   KR   E ESFFTWF+D 
Sbjct:   138 VLSKEF-HLNESGDPSSKSTEIKWKSGKDLTKRSSQTQNKASRKRQHEEPESFFTWFTDH 196

Query:   190 QEKDTIDGIQDEVAEIIKEDLWPNPLTYF 218
                   D   DE+ E+IK+D+WPNPL Y+
Sbjct:   197 S-----DAGADELGEVIKDDIWPNPLQYY 220

GO:0006334 "nucleosome assembly" evidence=IEA

GO:0005634 "nucleus" evidence=IEA

GO:0005783 "endoplasmic reticulum" evidence=IEA

GO:0043234 "protein complex" evidence=IEA

GO:0043524 "negative regulation of neuron apoptotic process" evidence=IEA

GO:0045892 "negative regulation of transcription, DNA-dependent" evidence=IEA

GO:0048471 "perinuclear region of cytoplasm" evidence=IEA

FB|FBgn0014879 Set "Set" [Drosophila melanogaster (taxid:7227)]

 Score = 481 (174.4 bits), Expect = 7.9e-46, P = 7.9e-46
 Identities = 95/217 (43%), Positives = 145/217 (66%)

Query:     9 TKVEEENAEQIDSELVLSIEKLQEIQDELEKINEEASEKVLEVEQKYSEIRKPVYDKRND 68
             T     N E+ +SE   ++E++   Q+E++ +NE+ASE++L+VEQKY+++RKP Y+KR++
Sbjct:    19 TSAAAGNNEE-ESE---ALEQIDACQNEIDALNEKASEEILKVEQKYNKLRKPCYEKRSE 74

Query:    69 IIKSIPDFWLTAFISHPALGELLSEEDQKIFRYLSSLEVEDFKDVKSGYSITFNFSPNPY 128
             ++K IP+FW+T+FI+HP +  +L EE+++    L+ LEVE+F+D+KSGY I F+F  NPY
Sbjct:    75 LVKRIPNFWVTSFINHPQVSGILDEEEEECLHALNKLEVEEFEDIKSGYRINFHFDENPY 134

Query:   129 FEDNKLTKTFTF----LDDDGSMKI-TATSIKWKEGMGIPNGVNHEKKGNKRPLAEE--S 181
             FE+  LTK F        ++G     T+T IKWKEG  +   +  +  GNK+    E  +
Sbjct:   135 FENKVLTKEFHLNSAAASENGDWPASTSTPIKWKEGKNLLKLLLTKPYGNKKKRNSEYKT 194

Query:   182 FFTWFSDTQEKDTIDGIQDEVAEIIKEDLWPNPLTYF 218
             FF WFSD       D + DE+AE+IK+DLWPNPL Y+
Sbjct:   195 FFDWFSDNT-----DPVNDEIAELIKDDLWPNPLQYY 226

GO:0005634 "nucleus" evidence=ISS

GO:0030332 "cyclin binding" evidence=NAS

GO:0006334 "nucleosome assembly" evidence=IEA

UNIPROTKB|Q5VXV2 SET "Protein SET" [Homo sapiens (taxid:9606)]

 Score = 481 (174.4 bits), Expect = 7.9e-46, P = 7.9e-46
 Identities = 89/203 (43%), Positives = 136/203 (66%)

Query:    19 IDSELVLSIEKLQEIQDELEKINEEASEKVLEVEQKYSEIRKPVYDKRNDIIKSIPDFWL 78
             ++ E   +IE + E+Q+E++++NE+ASE++L+VEQKY+++R+P + KR+++I  IP+FW+
Sbjct:    15 LEKEQQEAIEHIDEVQNEIDRLNEQASEEILKVEQKYNKLRQPFFQKRSELIAKIPNFWV 74

Query:    79 TAFISHPALGELLSEEDQKIFRYLSSLEVEDFKDVKSGYSITFNFSPNPYFEDNKLTKTF 138
             T F++HP +  LL EED++   YL+ +EV +F+D+KSGY I F F  NPYFE+  L+K F
Sbjct:    75 TTFVNHPQVSALLGEEDEEALHYLTRVEVTEFEDIKSGYRIDFYFDENPYFENKVLSKEF 134

Query:   139 TFLDDDGSMKITATSIKWKEGMGIP--NGVNHEKKGNKRPLAE-ESFFTWFSDTQEKDTI 195
               L++ G     +T IKWK G  +   +     K   KR   E ESFFTWF+D       
Sbjct:   135 -HLNESGDPSSKSTEIKWKSGKDLTKRSSQTQNKASRKRQHEEPESFFTWFTDHS----- 188

Query:   196 DGIQDEVAEIIKEDLWPNPLTYF 218
             D   DE+ E+IK+D+WPNPL Y+
Sbjct:   189 DAGADELGEVIKDDIWPNPLQYY 211

GO:0005634 "nucleus" evidence=IEA

GO:0006334 "nucleosome assembly" evidence=IEA

MGI|MGI:1860267 Set "SET nuclear oncogene" [Mus musculus (taxid:10090)]

 Score = 480 (174.0 bits), Expect = 1.0e-45, P = 1.0e-45
 Identities = 92/216 (42%), Positives = 143/216 (66%)

Query:    10 KVEEENAE----QIDSELVLSIEKLQEIQDELEKINEEASEKVLEVEQKYSEIRKPVYDK 65
             K+E+++A     + + E   +IE + E+Q+E++++NE+ASE++L+VEQKY+++R+P + K
Sbjct:    23 KLEDKSASPGLPKGEKEQQEAIEHIDEVQNEIDRLNEQASEEILKVEQKYNKLRQPFFQK 82

Query:    66 RNDIIKSIPDFWLTAFISHPALGELLSEEDQKIFRYLSSLEVEDFKDVKSGYSITFNFSP 125
             R+++I  IP+FW+T F++HP +  LL EED++   YL+ +EV +F+D+KSGY I F F  
Sbjct:    83 RSELIAKIPNFWVTTFVNHPQVSALLGEEDEEALHYLTRVEVTEFEDIKSGYRIDFYFDE 142

Query:   126 NPYFEDNKLTKTFTFLDDDGSMKITATSIKWKEGMGIP--NGVNHEKKGNKRPLAE-ESF 182
             NPYFE+  L+K F  L++ G     +T IKWK G  +   +     K   KR   E ESF
Sbjct:   143 NPYFENKVLSKEF-HLNESGDPSSKSTEIKWKSGKDLTKRSSQTQNKASRKRQHEEPESF 201

Query:   183 FTWFSDTQEKDTIDGIQDEVAEIIKEDLWPNPLTYF 218
             FTWF+D       D   DE+ E+IK+D+WPNPL Y+
Sbjct:   202 FTWFTDHS-----DAGADELGEVIKDDIWPNPLQYY 232

GO:0003677 "DNA binding" evidence=IEA

GO:0005634 "nucleus" evidence=ISO;IDA

GO:0005737 "cytoplasm" evidence=ISO

GO:0005783 "endoplasmic reticulum" evidence=ISO

GO:0006334 "nucleosome assembly" evidence=IEA

GO:0043234 "protein complex" evidence=ISO

GO:0043524 "negative regulation of neuron apoptotic process" evidence=ISO

GO:0045892 "negative regulation of transcription, DNA-dependent" evidence=ISO

GO:0048471 "perinuclear region of cytoplasm" evidence=ISO

RGD|1307467 Set "SET nuclear oncogene" [Rattus norvegicus (taxid:10116)]

 Score = 480 (174.0 bits), Expect = 1.0e-45, P = 1.0e-45
 Identities = 92/216 (42%), Positives = 143/216 (66%)

Query:    10 KVEEENAE----QIDSELVLSIEKLQEIQDELEKINEEASEKVLEVEQKYSEIRKPVYDK 65
             K+E+++A     + + E   +IE + E+Q+E++++NE+ASE++L+VEQKY+++R+P + K
Sbjct:    23 KLEDKSASPGLPKGEKEQQEAIEHIDEVQNEIDRLNEQASEEILKVEQKYNKLRQPFFQK 82

Query:    66 RNDIIKSIPDFWLTAFISHPALGELLSEEDQKIFRYLSSLEVEDFKDVKSGYSITFNFSP 125
             R+++I  IP+FW+T F++HP +  LL EED++   YL+ +EV +F+D+KSGY I F F  
Sbjct:    83 RSELIAKIPNFWVTTFVNHPQVSALLGEEDEEALHYLTRVEVTEFEDIKSGYRIDFYFDE 142

Query:   126 NPYFEDNKLTKTFTFLDDDGSMKITATSIKWKEGMGIP--NGVNHEKKGNKRPLAE-ESF 182
             NPYFE+  L+K F  L++ G     +T IKWK G  +   +     K   KR   E ESF
Sbjct:   143 NPYFENKVLSKEF-HLNESGDPSSKSTEIKWKSGKDLTKRSSQTQNKASRKRQHEEPESF 201

Query:   183 FTWFSDTQEKDTIDGIQDEVAEIIKEDLWPNPLTYF 218
             FTWF+D       D   DE+ E+IK+D+WPNPL Y+
Sbjct:   202 FTWFTDHS-----DAGADELGEVIKDDIWPNPLQYY 232

GO:0003677 "DNA binding" evidence=IEA

GO:0005634 "nucleus" evidence=ISO

GO:0005654 "nucleoplasm" evidence=IEA

GO:0005737 "cytoplasm" evidence=ISO;ISS

GO:0005783 "endoplasmic reticulum" evidence=ISO;ISS

GO:0005829 "cytosol" evidence=IEA

GO:0006334 "nucleosome assembly" evidence=IEA

GO:0043234 "protein complex" evidence=ISO

GO:0043524 "negative regulation of neuron apoptotic process" evidence=ISO

GO:0045892 "negative regulation of transcription, DNA-dependent" evidence=ISO

GO:0048471 "perinuclear region of cytoplasm" evidence=ISO;ISS

UNIPROTKB|Q01105 SET "Protein SET" [Homo sapiens (taxid:9606)]

 Score = 479 (173.7 bits), Expect = 1.3e-45, P = 1.3e-45
 Identities = 88/196 (44%), Positives = 133/196 (67%)

Query:    26 SIEKLQEIQDELEKINEEASEKVLEVEQKYSEIRKPVYDKRNDIIKSIPDFWLTAFISHP 85
             +IE + E+Q+E++++NE+ASE++L+VEQKY+++R+P + KR+++I  IP+FW+T F++HP
Sbjct:    44 AIEHIDEVQNEIDRLNEQASEEILKVEQKYNKLRQPFFQKRSELIAKIPNFWVTTFVNHP 103

Query:    86 ALGELLSEEDQKIFRYLSSLEVEDFKDVKSGYSITFNFSPNPYFEDNKLTKTFTFLDDDG 145
              +  LL EED++   YL+ +EV +F+D+KSGY I F F  NPYFE+  L+K F  L++ G
Sbjct:   104 QVSALLGEEDEEALHYLTRVEVTEFEDIKSGYRIDFYFDENPYFENKVLSKEF-HLNESG 162

Query:   146 SMKITATSIKWKEGMGIP--NGVNHEKKGNKRPLAE-ESFFTWFSDTQEKDTIDGIQDEV 202
                  +T IKWK G  +   +     K   KR   E ESFFTWF+D       D   DE+
Sbjct:   163 DPSSKSTEIKWKSGKDLTKRSSQTQNKASRKRQHEEPESFFTWFTDHS-----DAGADEL 217

Query:   203 AEIIKEDLWPNPLTYF 218
              E+IK+D+WPNPL Y+
Sbjct:   218 GEVIKDDIWPNPLQYY 233

GO:0006334 "nucleosome assembly" evidence=IEA

GO:0003677 "DNA binding" evidence=IEA

GO:0005829 "cytosol" evidence=IEA

GO:0005634 "nucleus" evidence=IDA

GO:0048471 "perinuclear region of cytoplasm" evidence=IDA

GO:0006337 "nucleosome disassembly" evidence=TAS

GO:0042393 "histone binding" evidence=TAS

GO:0008601 "protein phosphatase type 2A regulator activity" evidence=TAS

GO:0006913 "nucleocytoplasmic transport" evidence=NAS

GO:0035067 "negative regulation of histone acetylation" evidence=TAS

GO:0005783 "endoplasmic reticulum" evidence=IDA

GO:0005737 "cytoplasm" evidence=IDA

GO:0005515 "protein binding" evidence=IPI

GO:0043234 "protein complex" evidence=IDA

GO:0045892 "negative regulation of transcription, DNA-dependent" evidence=IDA

GO:0004864 "protein phosphatase inhibitor activity" evidence=TAS

GO:0006260 "DNA replication" evidence=TAS

GO:0043524 "negative regulation of neuron apoptotic process" evidence=IGI

GO:0005654 "nucleoplasm" evidence=TAS

GO:0010467 "gene expression" evidence=TAS

GO:0016070 "RNA metabolic process" evidence=TAS

GO:0016071 "mRNA metabolic process" evidence=TAS

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	243
pfam00956	236	pfam00956, NAP, Nucleosome assembly protein (NAP)	2e-53
PTZ00008	185	PTZ00008, PTZ00008, (NAP-S) nucleosome assembly pr	6e-26
PTZ00007	337	PTZ00007, PTZ00007, (NAP-L) nucleosome assembly pr	7e-20

>gnl|CDD|216213 pfam00956, NAP, Nucleosome assembly protein (NAP)

 Score =  172 bits (437), Expect = 2e-53
 Identities = 80/230 (34%), Positives = 125/230 (54%), Gaps = 37/230 (16%)

Query: 26  SIEKLQEIQDELEKINEEASEKVLEVEQKYSEIRKPVYDKRNDII--------------- 70
            +E L+ +Q EL+++  +  E+VLE+E+KY ++ +P+YDKR +II               
Sbjct: 3   RVEALKALQKELDELEAKFQEEVLELERKYDKLYQPLYDKRREIINGAREPTEVEEEEPE 62

Query: 71  -KSIPDFWLTAFISHPALGELLSEEDQKIFRYLSSLEVEDFKDVKSGYSITFNFSPNPYF 129
            K IP FWLTA  +HP L E+++E D++  +YL+ + VE  +D K G+ + F+F+PNPYF
Sbjct: 63  EKGIPGFWLTALKNHPLLSEMITERDEEALKYLTDIRVEYLEDPKKGFKLIFHFAPNPYF 122

Query: 130 EDNKLTKTFTFLDDDGS--MKITATSIKWKEGM-----GIPNGVNHEKKGNKRPLAE--- 179
            +  LTKT+   D+     +K   T I+WKEG       +     ++K G  R + +   
Sbjct: 123 TNEVLTKTYHLKDEGDPFELKSEGTPIEWKEGKNLTVKTVKKKQRNKKTGQTRTITKTVP 182

Query: 180 -ESFFTWFSDTQEKDTIDG----------IQDEVAEIIKEDLWPNPLTYF 218
            ESFF +FS  +  D  D           +  E+ EIIK+DL P  L Y+
Sbjct: 183 AESFFNFFSPPKVPDDDDDDDEELEEELELDYEIGEIIKDDLIPRALDYY 232

NAP proteins are involved in moving histones into the nucleus, nucleosome assembly and chromatin fluidity. They affect the transcription of many genes. Length = 236

>gnl|CDD|185394 PTZ00008, PTZ00008, (NAP-S) nucleosome assembly protein-S; Provisional

 Score = 99.5 bits (248), Expect = 6e-26
 Identities = 54/183 (29%), Positives = 90/183 (49%), Gaps = 9/183 (4%)

Query: 38  EKINEEASEKVLEVEQKYSEIRKPVYDKRNDIIKSIPDFWLTAFISHPALGELLSEEDQK 97
            +++EE +++ + +++++ E +KP+++KR +II+ IP FW      HPAL  L+  ED  
Sbjct: 1   MELDEECAKEQMNIQRQFDEKKKPLFEKRQEIIEKIPGFWADTLRRHPALSYLVP-EDID 59

Query: 98  IFRYLSSLEVEDFKDVKSGYSITFNFSP--NPYFEDNKLTKTFTFLDDDGSMKITATSIK 155
           I  +L  +++ED  D    Y IT  F      + E   L K   F  ++    +  T IK
Sbjct: 60  ILEHLKKIDLEDNLDNNGSYKITLIFDEKAKEFMEPLVLVKHVIF-KNNQEKVVEVTKIK 118

Query: 156 WKEGMGIPNGVNHEKKGNKRPLAEESFFTWFSDTQEKDTIDGIQDEVAEIIKEDLWPNPL 215
           WKEG          +          S F WF++ + +D  D     V EII+ ++W  PL
Sbjct: 119 WKEGKSPIAAAEKARSDLDDECIVWSIFEWFTEEEWQDRPD-----VGEIIRREIWHAPL 173

Query: 216 TYF 218
            Y+
Sbjct: 174 LYY 176

Length = 185

>gnl|CDD|240226 PTZ00007, PTZ00007, (NAP-L) nucleosome assembly protein -L; Provisional

 Score = 86.4 bits (214), Expect = 7e-20
 Identities = 60/207 (28%), Positives = 104/207 (50%), Gaps = 25/207 (12%)

Query: 7   KKTKVEEENAEQIDSELVLSIEKLQEIQDELEKINEEASEKVLEVEQKYSEIRKPVYDKR 66
              ++++E    +  E   +++KLQ +Q E + +  E + ++ ++  KY ++  P+YDKR
Sbjct: 23  DSIELDDEKLSHLTDEQRETLKKLQLLQKEFDDLEVEYNAELRKLRSKYEDLYNPIYDKR 82

Query: 67  NDII----------KSIPDFWLTAFISHPALGELLSEEDQKIFRYLSSLEVEDFKDVK-S 115
            + +            +P FWLTA  ++  LG  + E D+ I  YLS +  E  +  K  
Sbjct: 83  KEALVQNGGAEIGTPGLPQFWLTAMKNNNTLGSAIEEHDEPILSYLSDISCEYTEPNKQE 142

Query: 116 GYSITFNFSPNPYFEDNKLTKTF--TFLD-DDGSM--KITATSIKWKEGMGIPNGVNHEK 170
           G+ + F F+PNP+F +  LTKT+    LD DD  +     AT I WK+G  +   V  +K
Sbjct: 143 GFILVFTFAPNPFFSNTVLTKTYHMKVLDGDDEPLLSNTVATEIDWKQGKDVTKKVVTKK 202

Query: 171 KGNKRP---------LAEESFFTWFSD 188
           + +K+          +  ESFF +F+ 
Sbjct: 203 QRHKKTKETRTVTETVDRESFFNFFTS 229

Length = 337

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	243
PTZ00007	337	(NAP-L) nucleosome assembly protein -L; Provisiona	100.0
KOG1507	358	consensus Nucleosome assembly protein NAP-1 [Chrom	100.0
PTZ00008	185	(NAP-S) nucleosome assembly protein-S; Provisional	100.0
PF00956	244	NAP: Nucleosome assembly protein (NAP); InterPro:	100.0
KOG1508	260	consensus DNA replication factor/protein phosphata	100.0
PF11629	49	Mst1_SARAH: C terminal SARAH domain of Mst1; Inter	95.86
PF07352	149	Phage_Mu_Gam: Bacteriophage Mu Gam like protein; I	91.93
KOG1508	260	consensus DNA replication factor/protein phosphata	87.2
COG4396	170	Mu-like prophage host-nuclease inhibitor protein G	83.48

>PTZ00007 (NAP-L) nucleosome assembly protein -L; Provisional

Probab=100.00  E-value=2.7e-58  Score=419.32  Aligned_cols=216  Identities=30%  Similarity=0.572  Sum_probs=190.0

Q ss_pred             hhhhccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHhhhhhhc----------cccchHHHHH
Q 026110           12 EEENAEQIDSELVLSIEKLQEIQDELEKINEEASEKVLEVEQKYSEIRKPVYDKRNDIIK----------SIPDFWLTAF   81 (243)
Q Consensus        12 ~~e~~~~~~~~v~~~~~~L~~lQ~el~~le~e~~~e~~~le~ky~k~~~Ply~kR~eiI~----------~IP~FW~~vl   81 (243)
                      +.+.+..||+.+++++.+|+.||.++.++++++.+++++|+++|.++++|+|++|++||+          |||+||++||
T Consensus        28 ~~~~i~~Lp~~~~~rv~aL~~lQ~e~~~le~ef~~ev~~LE~kY~~~~~Ply~kR~eII~G~~~~e~~~~gIP~FWl~vL  107 (337)
T PTZ00007         28 DDEKLSHLTDEQRETLKKLQLLQKEFDDLEVEYNAELRKLRSKYEDLYNPIYDKRKEALVQNGGAEIGTPGLPQFWLTAM  107 (337)
T ss_pred             ccchhhhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHcCCcccccccCCcccHHHHHH
Confidence            446778999999999999999999999999999999999999999999999999999999          7999999999


Q ss_pred             hcChhhhccCChhhHHhhcCcceeEEEEccCCC-cceEEEEEecCCCcccCCeEEEEEEeeCCCC---C--ccccccccc
Q 026110           82 ISHPALGELLSEEDQKIFRYLSSLEVEDFKDVK-SGYSITFNFSPNPYFEDNKLTKTFTFLDDDG---S--MKITATSIK  155 (243)
Q Consensus        82 ~n~~~l~~~i~~~D~~iL~~L~dI~Ve~~~d~~-~~f~i~F~F~~NpyF~N~~L~K~~~~~~~~g---~--~~~~~t~I~  155 (243)
                      +||+.++.+|+++|+++|+||+||+|++..+.. .||+|+|+|++||||+|++|+|+|++...+|   +  ..+++|+|+
T Consensus       108 ~Nh~~ls~~I~e~De~iL~~L~dI~ve~~~~~~~~gf~I~F~F~~NpyF~N~vLtK~y~~~~~d~~~~p~~~~~~~t~I~  187 (337)
T PTZ00007        108 KNNNTLGSAIEEHDEPILSYLSDISCEYTEPNKQEGFILVFTFAPNPFFSNTVLTKTYHMKVLDGDDEPLLSNTVATEID  187 (337)
T ss_pred             HcCccHhhhCCHHHHHHHHhhCceEEEEccCCCCCceEEEEEeCCCCCCCCCeEEEEEEeecCCCCCCceeecceeeece
Confidence            999999999999999999999999999886654 8999999999999999999999999864233   2  356899999


Q ss_pred             ccCCCCCCCccccccCCCC-----c----cccccccccccccccCCCccC----------------CchhHHHHHHhhcc
Q 026110          156 WKEGMGIPNGVNHEKKGNK-----R----PLAEESFFTWFSDTQEKDTID----------------GIQDEVAEIIKEDL  210 (243)
Q Consensus       156 Wk~gk~lt~~~~~~k~~~~-----r----~~~~~SFF~~F~~~~~~~~~e----------------~~~~ei~~~i~d~i  210 (243)
                      ||+|+++|++.+.+|++++     |    +++..|||+||+++..++..+                +.|++||++|+++|
T Consensus       188 WK~GkdlT~k~v~kKqr~K~~~~~r~v~~~~~~~SFFnfF~p~~~p~~~~~e~~~e~~~ee~~~~l~~DyeiG~~ikd~I  267 (337)
T PTZ00007        188 WKQGKDVTKKVVTKKQRHKKTKETRTVTETVDRESFFNFFTSHEVPSDEELEKMSKHEIAELEMIVETDYEIGITIRDKL  267 (337)
T ss_pred             eeCCCCchhhhcccccccccCCCceeeccCCCCCChHHhcCCCCCCcccccccccchhHHHHHHHHHHhHHHHHHHHHhc
Confidence            9999999998776554433     2    346799999999987664321                14779999999999


Q ss_pred             ccchhhhccccCCCCcc
Q 026110          211 WPNPLTYFNNVIPLPVS  227 (243)
Q Consensus       211 ~p~al~yy~~~~~~~~~  227 (243)
                      ||+||.||+|+..+..+
T Consensus       268 IP~AV~yftGea~d~~~  284 (337)
T PTZ00007        268 IPYAVYWFLGEAIDEDS  284 (337)
T ss_pred             ccccHHhhCCCcccccc
Confidence            99999999999876554

>KOG1507 consensus Nucleosome assembly protein NAP-1 [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]

Probab=100.00  E-value=6.9e-57  Score=404.28  Aligned_cols=213  Identities=31%  Similarity=0.603  Sum_probs=189.7

Q ss_pred             hhccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHhhhhhh-----------------------
Q 026110           14 ENAEQIDSELVLSIEKLQEIQDELEKINEEASEKVLEVEQKYSEIRKPVYDKRNDII-----------------------   70 (243)
Q Consensus        14 e~~~~~~~~v~~~~~~L~~lQ~el~~le~e~~~e~~~le~ky~k~~~Ply~kR~eiI-----------------------   70 (243)
                      +++..||+.|+++|.+|++||.+..+++.++.+++++||+||.++++|+|+||++||                       
T Consensus        66 ~~v~~Lp~~Vk~Rv~aLk~lQ~~~~~ie~~F~~e~~~LE~ky~~~yqplfdkR~eIi~g~~EP~eee~e~~~~~~de~~~  145 (358)
T KOG1507|consen   66 DMVENLPPAVKNRVLALKNLQLECDEIEAKFQEEVHELERKYAKLYQPLFDKRREIINGEVEPTEEEIEWPEEIEDEGNL  145 (358)
T ss_pred             hhhhhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchHHHHHHHHHhCCccCccccccccccccccccc
Confidence            788999999999999999999999999999999999999999999999999999998                       


Q ss_pred             ------------ccccchHHHHHhcChhhhccCChhhHHhhcCcceeEEEEccCCCcceEEEEEecCCCcccCCeEEEEE
Q 026110           71 ------------KSIPDFWLTAFISHPALGELLSEEDQKIFRYLSSLEVEDFKDVKSGYSITFNFSPNPYFEDNKLTKTF  138 (243)
Q Consensus        71 ------------~~IP~FW~~vl~n~~~l~~~i~~~D~~iL~~L~dI~Ve~~~d~~~~f~i~F~F~~NpyF~N~~L~K~~  138 (243)
                                  +|||+||+|||+|++.++++|+++|++||+||+||++.+.+++..||+|.|+|++||||+|++|||+|
T Consensus       146 ~e~~~~~~~~d~KGIP~FWLtvlkNvd~lse~I~~~DEpiLk~L~DI~~~~~~~~~~~fklEFhFd~N~YFtN~vLTKTY  225 (358)
T KOG1507|consen  146 AEDTEEAEKEDPKGIPDFWLTVLKNVDLLSEMITERDEPILKYLKDIRLKYSEDGQVGFKLEFHFDPNPYFTNEVLTKTY  225 (358)
T ss_pred             ccchhhhccccccCCchHHHHHHhhhhhhhhhcccccHHHHHHHhhhheeeccCCccceEEEEEcCCCccccccceeeee
Confidence                        37999999999999999999999999999999999999998867999999999999999999999999


Q ss_pred             Eee---CCCCC--------cccccccccccCCCCCCCccccccCCC-----C----ccccccccccccccccCCCccC--
Q 026110          139 TFL---DDDGS--------MKITATSIKWKEGMGIPNGVNHEKKGN-----K----RPLAEESFFTWFSDTQEKDTID--  196 (243)
Q Consensus       139 ~~~---~~~g~--------~~~~~t~I~Wk~gk~lt~~~~~~k~~~-----~----r~~~~~SFF~~F~~~~~~~~~e--  196 (243)
                      ++.   +.+++        ..|+||.|+|++|||||++.+.+|+.+     .    ++++..||||||+++..+++.+  
T Consensus       226 ~l~~~~D~~~P~~~~G~~i~~~~Gc~IdW~~gknlT~kti~kKq~~k~~~~~r~vtk~vp~eSFFNFFsPP~ipd~~d~D  305 (358)
T KOG1507|consen  226 FLKSEPDEDDPFAFDGPEIEKCEGCEIDWKPGKNLTVKTIKKKQRNKGTGQVRTVTKTVPNESFFNFFSPPEIPDEEDLD  305 (358)
T ss_pred             eeeccCCCcCCcccCCceEEeeecCeeeccCCCccchhhhhhhccccCCCceeeeeecccchhhhhccCCCCCCcccccC
Confidence            998   32333        347999999999999999876654322     2    2468899999999999884321  


Q ss_pred             C--------chhHHHHHHhhccccchhhhccccCCCCc
Q 026110          197 G--------IQDEVAEIIKEDLWPNPLTYFNNVIPLPV  226 (243)
Q Consensus       197 ~--------~~~ei~~~i~d~i~p~al~yy~~~~~~~~  226 (243)
                      +        .|++||+.||+.|||.||.||+|+.-+.+
T Consensus       306 ed~~~~~L~~DyeIG~~lr~~IIPrAV~~fTGea~e~~  343 (358)
T KOG1507|consen  306 EDDLEELLELDYEIGETLRDKIIPRAVLWFTGEALEDE  343 (358)
T ss_pred             chHHHHHHHhhHHHHHHHHhhhhhheeeeecccccccc
Confidence            1        46999999999999999999999984443

>PTZ00008 (NAP-S) nucleosome assembly protein-S; Provisional

Probab=100.00  E-value=3.3e-55  Score=370.96  Aligned_cols=180  Identities=29%  Similarity=0.605  Sum_probs=160.8

Q ss_pred             HHHHHHHHHHHHHHHHHHHhhhhhHHhhhhhhccccchHHHHHhcChhhhccCChhhHHhhcCcceeEEEEccCCCcceE
Q 026110           39 KINEEASEKVLEVEQKYSEIRKPVYDKRNDIIKSIPDFWLTAFISHPALGELLSEEDQKIFRYLSSLEVEDFKDVKSGYS  118 (243)
Q Consensus        39 ~le~e~~~e~~~le~ky~k~~~Ply~kR~eiI~~IP~FW~~vl~n~~~l~~~i~~~D~~iL~~L~dI~Ve~~~d~~~~f~  118 (243)
                      +|+.++.+++++|+++|+++++|+|++|++||+|||+||++||+||+.++ +|+++|+++|+||+||+|++..++..||+
T Consensus         2 ~l~~e~~~e~~~le~ky~~~~~p~y~kR~~II~gIP~FW~~vl~n~~~~~-~I~~~D~~~L~~L~dI~ve~~~~~~~~f~   80 (185)
T PTZ00008          2 ELDEECAKEQMNIQRQFDEKKKPLFEKRQEIIEKIPGFWADTLRRHPALS-YLVPEDIDILEHLKKIDLEDNLDNNGSYK   80 (185)
T ss_pred             hHHHHHHHHHHHHHHHHHHHhCHHHHHHHHHHhcCccHHHHHHHcCcccc-ccCHHHHHHHHHhCceEEEEeecCCCCEE
Confidence            57889999999999999999999999999999999999999999999999 99999999999999999997555578999


Q ss_pred             EEEEecC--CCcccCCeEEEEEEeeCCCCCcccccccccccCCCCCCCccccccCCCCccccccccccccccccCCCccC
Q 026110          119 ITFNFSP--NPYFEDNKLTKTFTFLDDDGSMKITATSIKWKEGMGIPNGVNHEKKGNKRPLAEESFFTWFSDTQEKDTID  196 (243)
Q Consensus       119 i~F~F~~--NpyF~N~~L~K~~~~~~~~g~~~~~~t~I~Wk~gk~lt~~~~~~k~~~~r~~~~~SFF~~F~~~~~~~~~e  196 (243)
                      |+|+|++  ||||+|++|+|+|++.. ++..++++|+|+||+|+|+|.+...+++..+++.+..|||+||+++..+    
T Consensus        81 i~F~F~~~~N~yF~n~~LtK~y~~~~-~~~~~~~~t~I~Wk~gkn~t~~~~kk~~~~~~~~~~~SFF~fF~~~~~~----  155 (185)
T PTZ00008         81 ITLIFDEKAKEFMEPLVLVKHVIFKN-NQEKVVEVTKIKWKEGKSPIAAAEKARSDLDDECIVWSIFEWFTEEEWQ----  155 (185)
T ss_pred             EEEEECCCCCCCcCCCEEEEEEEEec-CCCceeeeeecccCCCCCcceeeeeccCccccCCCCCChhhcCCCCccc----
Confidence            9999965  89999999999999987 6667889999999999999987655333233456779999999987543    


Q ss_pred             CchhHHHHHHhhccccchhhhccccCCCC
Q 026110          197 GIQDEVAEIIKEDLWPNPLTYFNNVIPLP  225 (243)
Q Consensus       197 ~~~~ei~~~i~d~i~p~al~yy~~~~~~~  225 (243)
                       .+++||++|+++||||||.||+|++.+.
T Consensus       156 -~~~eIg~~i~e~i~P~av~yy~ge~~~~  183 (185)
T PTZ00008        156 -DRPDVGEIIRREIWHAPLLYYLDTVSID  183 (185)
T ss_pred             -CcHHHHHHHHHhhccchHHhhCCccccc
Confidence             5799999999999999999999987653

>PF00956 NAP: Nucleosome assembly protein (NAP); InterPro: IPR002164 It is thought that NAPs act as histone chaperones, shuttling both core and linker histones from their site of synthesis in the cytoplasm to the nucleus

Probab=100.00  E-value=3.1e-54  Score=379.94  Aligned_cols=198  Identities=40%  Similarity=0.762  Sum_probs=170.5

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHhhhhhhcc-------------------ccchHHHHHhcC
Q 026110           24 VLSIEKLQEIQDELEKINEEASEKVLEVEQKYSEIRKPVYDKRNDIIKS-------------------IPDFWLTAFISH   84 (243)
Q Consensus        24 ~~~~~~L~~lQ~el~~le~e~~~e~~~le~ky~k~~~Ply~kR~eiI~~-------------------IP~FW~~vl~n~   84 (243)
                      ++++.+|+.+|.+++.++.++.+++++|+++|.++++|+|++|++||+|                   ||+||++||.||
T Consensus         1 ~~~i~~L~~~q~~~~~l~~~~~~e~~~le~ky~~~~~pl~~kR~~ii~g~~~~~~~~~~~~~~~~~~gIP~FW~~vl~n~   80 (244)
T PF00956_consen    1 KQRIEALKKLQEELDELEKEFEEEIHELERKYNKLYKPLYEKRREIINGKREPTEIEWEERQEEKPKGIPGFWLTVLKNH   80 (244)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSS---HHHH-----SSSTTSTTHHHHHHHTS
T ss_pred             ChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHhccccccccccccchhhccccCCCCccccccccC
Confidence            5789999999999999999999999999999999999999999999999                   999999999999


Q ss_pred             hhhhccCChhhHHhhcCcceeEEEEccCCCcceEEEEEecCCCcccCCeEEEEEEeeCCCCC------cccccccccccC
Q 026110           85 PALGELLSEEDQKIFRYLSSLEVEDFKDVKSGYSITFNFSPNPYFEDNKLTKTFTFLDDDGS------MKITATSIKWKE  158 (243)
Q Consensus        85 ~~l~~~i~~~D~~iL~~L~dI~Ve~~~d~~~~f~i~F~F~~NpyF~N~~L~K~~~~~~~~g~------~~~~~t~I~Wk~  158 (243)
                      +.++.+|++.|.++|+||+||+|++..++..+|+|+|+|++||||+|++|+|+|++.. .|.      .++++|+|+||+
T Consensus        81 ~~~~~~i~~~D~~iL~~L~dI~v~~~~~~~~~f~l~F~F~~NpyF~n~~L~K~~~~~~-~~~~~~~~~~~~~~t~I~Wk~  159 (244)
T PF00956_consen   81 PLLAELISEEDEEILSYLTDIRVEYFEDNPRGFKLTFHFKPNPYFSNTVLTKEYYLKK-EGDEEDPDELKSESTPIDWKP  159 (244)
T ss_dssp             HHHHTTSSHHHHHHHTTEEEEEEEECCSSTTEEEEEEEECSTSSBSESEEEEEEEEES-SSSTTTT-EEEEEE---EBST
T ss_pred             chhhcccccccHHHHHhhhheEEEecccCCcceEEEEEECCCCcccCCEEEEEEEEec-cCCCCCCCcceeeeecccccC
Confidence            9999999999999999999999999987789999999999999999999999999987 443      788999999999


Q ss_pred             CCCCCCccccccCCCCc---------cccccccccccccccCCCccC------------CchhHHHHHHhhccccchhhh
Q 026110          159 GMGIPNGVNHEKKGNKR---------PLAEESFFTWFSDTQEKDTID------------GIQDEVAEIIKEDLWPNPLTY  217 (243)
Q Consensus       159 gk~lt~~~~~~k~~~~r---------~~~~~SFF~~F~~~~~~~~~e------------~~~~ei~~~i~d~i~p~al~y  217 (243)
                      |+++|++...+++++++         ....+|||+||+++..+++.+            ..+++||++|+++|||+||.|
T Consensus       160 gkd~t~~~~~~k~~~k~~~~~~~~~~~~~~~SFF~~F~~~~~~~~~~~e~~~~~~~~~~~~d~ei~~~i~d~i~P~av~y  239 (244)
T PF00956_consen  160 GKDLTKKEVKKKQKNKGTKQVRTITKEVPTESFFNFFSPPKLPDEEDDEEEDEDEEEEIEDDFEIGEIIKDDIIPNAVKY  239 (244)
T ss_dssp             TTCTTCCCCECECCSCCCH-ECCCCCCCC--SGGGGSS-B-S--TTTSSSTCHHHHHHHHHHHHHHHHHHHTCCCHHHHH
T ss_pred             CCCccchhhhhcccccccccccceeecccCcchhhhcccCCCCcccccccchhhHHHHhhccHHHHHHHHhheechHHHH
Confidence            99999987655433222         246689999999775543111            148899999999999999999


Q ss_pred             ccccC
Q 026110          218 FNNVI  222 (243)
Q Consensus       218 y~~~~  222 (243)
                      |+|++
T Consensus       240 y~gea  244 (244)
T PF00956_consen  240 YTGEA  244 (244)
T ss_dssp             HHTCT
T ss_pred             hCCCC
Confidence            99984

The proteins may be involved in regulating gene expression and therefore cellular differentiation [, ]. The centrosomal protein c-Nap1, also known as Cep250, has been implicated in the cell-cycle-regulated cohesion of microtubule-organizing centres. This 281 kDa protein consists mainly of domains predicted to form coiled coil structures. The C-terminal region defines a novel histone-binding domain that is responsible for targeting CNAP1, and possibly condensin, to mitotic chromosomes []. During interphase, C-Nap1 localizes to the proximal ends of both parental centrioles, but it dissociates from these structures at the onset of mitosis. Re-association with centrioles then occurs in late telophase or at the very beginning of G1 phase, when daughter cells are still connected by post-mitotic bridges. Electron microscopic studies performed on isolated centrosomes suggest that a proteinaceous linker connects parental centrioles and C-Nap1 may be part of a linker structure that assures the cohesion of duplicated centrosomes during interphase, but that is dismantled upon centrosome separation at the onset of mitosis []. ; GO: 0006334 nucleosome assembly, 0005634 nucleus; PDB: 2E50_Q 2Z2R_A 2AYU_A 3Q66_A 3C9B_A 3Q68_B 3Q33_B 2ZD7_B 3DM7_A 3C9D_A ....

>KOG1508 consensus DNA replication factor/protein phosphatase inhibitor SET/SPR-2 [Replication, recombination and repair]

Probab=100.00  E-value=2.5e-34  Score=255.24  Aligned_cols=206  Identities=44%  Similarity=0.814  Sum_probs=185.3

Q ss_pred             hccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHhhhhhhccccchHHHHHhcChhhhccCChh
Q 026110           15 NAEQIDSELVLSIEKLQEIQDELEKINEEASEKVLEVEQKYSEIRKPVYDKRNDIIKSIPDFWLTAFISHPALGELLSEE   94 (243)
Q Consensus        15 ~~~~~~~~v~~~~~~L~~lQ~el~~le~e~~~e~~~le~ky~k~~~Ply~kR~eiI~~IP~FW~~vl~n~~~l~~~i~~~   94 (243)
                      .+.....+++.+++.|++||.+++.++++..+++++++++|...++|+|++|+.||+.||+||.+++.|||.++.+|.+.
T Consensus        22 ~l~~~~~~~~~~~~~l~~i~~e~~~~~~~a~~~~l~l~~~~~~~r~p~~~~r~~ii~~i~~fw~~~~~~hp~~~~~i~~~  101 (260)
T KOG1508|consen   22 HLSRRGREIEEALETLENIQHELDRMNAKAEVEVLKLEQKFNRFRRPVYEKRRELIKEIPNFWVTAFLNHPTLSEWIPEE  101 (260)
T ss_pred             ccccchhHHHhhhHHHHHHHHHhhhhhhhhHHHHHHHHHHHHhhhCchhhhhhHHHhhcccceeEEEecCCcHhhhhhhh
Confidence            45557789999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             hHHhhcCcceeEEEEccCCCcceEEEEEecCCCcccCCeEEEEEEeeCCCCCcccccccccccCCCCCCCccccccCCCC
Q 026110           95 DQKIFRYLSSLEVEDFKDVKSGYSITFNFSPNPYFEDNKLTKTFTFLDDDGSMKITATSIKWKEGMGIPNGVNHEKKGNK  174 (243)
Q Consensus        95 D~~iL~~L~dI~Ve~~~d~~~~f~i~F~F~~NpyF~N~~L~K~~~~~~~~g~~~~~~t~I~Wk~gk~lt~~~~~~k~~~~  174 (243)
                      |.+++.||.++.|+.+.+..+||++.|+|..|+||+|.+++|+|++.. .|..++.+|+|.|+.|+++........-+++
T Consensus       102 ~~e~~~~l~~~~v~e~~~~~sg~~~~~~f~~ney~~~~~~~ke~~~~~-~~~~~s~~t~i~w~~~~~~~~~~~~~~~~~k  180 (260)
T KOG1508|consen  102 DEEALHYLHNLEVEELGDIKSGYRIKFSFEINEYFTNDLLVKEFQYKE-SGKPSSESTPISWKEGKPLPNPVKRGELKNK  180 (260)
T ss_pred             hhhhhccchHHHHHHhccccccCeeeeeeccchhcccchhceeeeeec-ccCcccccccccccCCCCCcccccccccccc
Confidence            999999999999999998899999999999999999999999999988 7778889999999999998765542222234


Q ss_pred             ccccccccccccccccCCCccCCchhHHHHHHhhccccchhhhccccCCCCc
Q 026110          175 RPLAEESFFTWFSDTQEKDTIDGIQDEVAEIIKEDLWPNPLTYFNNVIPLPV  226 (243)
Q Consensus       175 r~~~~~SFF~~F~~~~~~~~~e~~~~ei~~~i~d~i~p~al~yy~~~~~~~~  226 (243)
                      +.....|||.||+++..++     .++|+++|++++||++++||+......+
T Consensus       181 ~~~~~~s~f~wf~~~~~~~-----~d~i~ei~~~~~~~~~~~~~~~~~~~~~  227 (260)
T KOG1508|consen  181 NGDGPKSFFEWFSDTSLKE-----FDEILEIIKDELWPNPLQYYLEPDGEEA  227 (260)
T ss_pred             cCcccccHHHHHHhccCCC-----ccchhhhhhcccccchhhhhcccccccc
Confidence            4456699999999998774     4489999999999999999987664443

>PF11629 Mst1_SARAH: C terminal SARAH domain of Mst1; InterPro: IPR024205 The SARAH (Sav/Rassf/Hpo) domain is found at the C terminus in three classes of eukaryotic tumour suppressors that give the domain its name

Probab=95.86  E-value=0.03  Score=37.37  Aligned_cols=36  Identities=28%  Similarity=0.605  Sum_probs=32.6

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHh
Q 026110           30 LQEIQDELEKINEEASEKVLEVEQKYSEIRKPVYDK   65 (243)
Q Consensus        30 L~~lQ~el~~le~e~~~e~~~le~ky~k~~~Ply~k   65 (243)
                      +.+||..+..++.++++|+-+|.+.|..+++|+.+.
T Consensus        10 ~~eL~~rl~~LD~~ME~Eieelr~RY~~KRqPIldA   45 (49)
T PF11629_consen   10 YEELQQRLASLDPEMEQEIEELRQRYQAKRQPILDA   45 (49)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHhCCHHHHHHHHHHHHHHHHhhccHHHH
Confidence            466789999999999999999999999999999865

In the Sav (Salvador) and Hpo (Hippo) families, the SARAH domain mediates signal transduction from Hpo via the Sav scaffolding protein to the downstream component Wts (Warts); the phosphorylation of Wts by Hpo triggers cell cycle arrest and apoptosis by down-regulating cyclin E, Diap 1 and other targets []. The SARAH domain is also involved in dimerisation, as in the human Hpo orthologue, Mst1, which homodimerises via its C-terminal SARAH domain. The SARAH domain is found associated with other domains, such as protein kinase domains, WW/rsp5/WWP domain (IPR001202 from INTERPRO), C1 domain (IPR002219 from INTERPRO), LIM domain (IPR001781 from INTERPRO), or the Ras-associating (RA) domain (IPR000159 from INTERPRO).; GO: 0004674 protein serine/threonine kinase activity; PDB: 2JO8_A.

>PF07352 Phage_Mu_Gam: Bacteriophage Mu Gam like protein; InterPro: IPR009951 The Gam protein, originally characterised in Bacteriophage Mu, protects linear double stranded DNA from exonuclease degradation in vitro and in vivo []

Probab=91.93  E-value=0.62  Score=38.04  Aligned_cols=56  Identities=18%  Similarity=0.374  Sum_probs=49.7

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHhhhhhhccccch
Q 026110           21 SELVLSIEKLQEIQDELEKINEEASEKVLEVEQKYSEIRKPVYDKRNDIIKSIPDF   76 (243)
Q Consensus        21 ~~v~~~~~~L~~lQ~el~~le~e~~~e~~~le~ky~k~~~Ply~kR~eiI~~IP~F   76 (243)
                      .++-.++..+.++|.++..++.++..++.++...|.....|+-.+...+-.+|-.|
T Consensus         3 ~~a~~al~ki~~l~~~~~~i~~~~~~~I~~i~~~~~~~~~~l~~~i~~l~~~l~~y   58 (149)
T PF07352_consen    3 EEADWALRKIAELQREIARIEAEANDEIARIKEWYEAEIAPLQNRIEYLEGLLQAY   58 (149)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            45678899999999999999999999999999999999999998888777666555

This protein is also found in many bacterial species as part of a suspected prophage. Further studies have shown that Gam is a functional counterpart of the eukaryotic Ku protein, which has key roles in DNA repair and in certain transposition events. Gam displays DNA binding characteristics remarkably similar to those of human Ku []. In addition, Gam can interfere with Ty1 retrotransposition in Saccharomyces cerevisiae (Baker's yeast). These data reveal structural and functional parallels between bacteriophage Gam and eukaryotic Ku and suggest that their functions have been evolutionarily conserved [].; GO: 0003690 double-stranded DNA binding, 0042262 DNA protection; PDB: 2P2U_B.

>KOG1508 consensus DNA replication factor/protein phosphatase inhibitor SET/SPR-2 [Replication, recombination and repair]

Probab=87.20  E-value=0.014  Score=52.37  Aligned_cols=138  Identities=14%  Similarity=0.056  Sum_probs=90.8

Q ss_pred             HHHHhhhhhHHhhhhhhccccchHHHHHhcChhhhccCChhhHHhhcCcceeEEEEccCCCcceEEEEEecCCCcccCCe
Q 026110           54 KYSEIRKPVYDKRNDIIKSIPDFWLTAFISHPALGELLSEEDQKIFRYLSSLEVEDFKDVKSGYSITFNFSPNPYFEDNK  133 (243)
Q Consensus        54 ky~k~~~Ply~kR~eiI~~IP~FW~~vl~n~~~l~~~i~~~D~~iL~~L~dI~Ve~~~d~~~~f~i~F~F~~NpyF~N~~  133 (243)
                      +-.+.. ++..+|...++.++++|..+=.....+.   -..+.++|               ...++...|..|+|++++.
T Consensus        15 ~~e~~~-~~l~~~~~~~~~~~~~l~~i~~e~~~~~---~~a~~~~l---------------~l~~~~~~~r~p~~~~r~~   75 (260)
T KOG1508|consen   15 KMERRK-EHLSRRGREIEEALETLENIQHELDRMN---AKAEVEVL---------------KLEQKFNRFRRPVYEKRRE   75 (260)
T ss_pred             cccccc-cccccchhHHHhhhHHHHHHHHHhhhhh---hhhHHHHH---------------HHHHHHHhhhCchhhhhhH
Confidence            333344 8999999999999999987654333222   12222222               2223344567899999999


Q ss_pred             EEEEEEeeCCCCC-cccccccccccCCCCCCCccccccCCCCc-cccccccccccccccCCCccCCchhHHHHHHhhccc
Q 026110          134 LTKTFTFLDDDGS-MKITATSIKWKEGMGIPNGVNHEKKGNKR-PLAEESFFTWFSDTQEKDTIDGIQDEVAEIIKEDLW  211 (243)
Q Consensus       134 L~K~~~~~~~~g~-~~~~~t~I~Wk~gk~lt~~~~~~k~~~~r-~~~~~SFF~~F~~~~~~~~~e~~~~ei~~~i~d~i~  211 (243)
                      |+|++.=.-  +. ...+++.+.|-.+.+....       ... ......|+++++.....     ..+++++.+.+++|
T Consensus        76 ii~~i~~fw--~~~~~~hp~~~~~i~~~~~e~~-------~~l~~~~v~e~~~~~sg~~~~-----~~f~~ney~~~~~~  141 (260)
T KOG1508|consen   76 LIKEIPNFW--VTAFLNHPTLSEWIPEEDEEAL-------HYLHNLEVEELGDIKSGYRIK-----FSFEINEYFTNDLL  141 (260)
T ss_pred             HHhhcccce--eEEEecCCcHhhhhhhhhhhhh-------ccchHHHHHHhccccccCeee-----eeeccchhcccchh
Confidence            999963111  11 2347889999887764332       011 13445688888877653     45678889999999


Q ss_pred             cchhhhccccCCC
Q 026110          212 PNPLTYFNNVIPL  224 (243)
Q Consensus       212 p~al~yy~~~~~~  224 (243)
                      -+.++|+....+-
T Consensus       142 ~ke~~~~~~~~~~  154 (260)
T KOG1508|consen  142 VKEFQYKESGKPS  154 (260)
T ss_pred             ceeeeeecccCcc
Confidence            9999999987743

>COG4396 Mu-like prophage host-nuclease inhibitor protein Gam [General function prediction only]

Probab=83.48  E-value=2.8  Score=34.20  Aligned_cols=58  Identities=17%  Similarity=0.379  Sum_probs=51.9

Q ss_pred             CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHhhhhhhccccch
Q 026110           19 IDSELVLSIEKLQEIQDELEKINEEASEKVLEVEQKYSEIRKPVYDKRNDIIKSIPDF   76 (243)
Q Consensus        19 ~~~~v~~~~~~L~~lQ~el~~le~e~~~e~~~le~ky~k~~~Ply~kR~eiI~~IP~F   76 (243)
                      --.+|...+..|-+||.|...|+.++-.++.+++..|..+..|+-+.-..+.++|..+
T Consensus        16 ~~eeV~~~Ir~iGDlqRE~~RLeTemnDk~aai~e~Yapq~~~lk~EI~~L~k~vq~y   73 (170)
T COG4396          16 DKEEVTAFIRQIGDLQREVKRLETEMNDKKAAIEEEYAPQAAPLKAEIMSLTKRVQAY   73 (170)
T ss_pred             cHHHHHHHHHHHHHHHHHHHHHHHHhcchHhHHHHHhhhhhHHHHHHHHHHHHHHHHH
Confidence            3467899999999999999999999999999999999999999998877777777765

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	243
2e50_A	225	Crystal Structure Of SetTAF-1betaINHAT Length = 225		6e-46
3kyp_A	193	Crystal Structure Of Nucleosome Assembly Protein S		3e-24
3hfd_A	276	Nucleosome Assembly Protein 1 From Plasmodium Knowl		2e-14
3gyv_A	249	Crystal Structure Of Nucleosome Assembly Protein Fr		6e-13
3fs3_A	359	Crystal Structure Of Malaria Parasite Nucleosome As		1e-12
2z2r_A	292	Nucleosome Assembly Proteins I (Nap-1, 74-365) Leng		5e-09
2ayu_A	417	The Structure Of Nucleosome Assembly Protein Sugges		6e-09
3c9d_A	259	Crystal Structure Of Vps75 Length = 259		3e-04
3q33_B	232	Structure Of The Rtt109-AccoaVPS75 COMPLEX AND IMPL		3e-04
2zd7_A	264	The Structure Of Vps75 (Vacuolar Protein Sorting-As		3e-04
3c9b_A	259	Crystal Structure Of Semet Vps75 Length = 259		4e-04
3dm7_A	234	Crystal Structure Of The Vps75 Histone Chaperone Le		7e-04

>pdb|2E50|A Chain A, Crystal Structure Of SetTAF-1betaINHAT Length = 225

Iteration: 1
 Score =  180 bits (457), Expect = 6e-46,   Method: Compositional matrix adjust.
 Identities = 88/196 (44%), Positives = 133/196 (67%), Gaps = 9/196 (4%)
Query: 26  SIEKLQEIQDELEKINEEASEKVLEVEQKYSEIRKPVYDKRNDIIKSIPDFWLTAFISHP 85
           +IE + E+Q+E++++NE+ASE++L+VEQKY+++R+P + KR+++I  IP+FW+T F++HP
Sbjct: 31  AIEHIDEVQNEIDRLNEQASEEILKVEQKYNKLRQPFFQKRSELIAKIPNFWVTTFVNHP 90
Query: 86  ALGELLSEEDQKIFRYLSSLEVEDFKDVKSGYSITFNFSPNPYFEDNKLTKTFTFLDDDG 145
            +  LL EED++   YL+ +EV +F+D+KSGY I F F  NPYFE+  L+K F  +++ G
Sbjct: 91  QVSALLGEEDEEAMHYLTRVEVTEFEDIKSGYRIDFYFDENPYFENKVLSKEF-HMNESG 149
Query: 146 SMKITATSIKWKEG--MGIPNGVNHEKKGNKRPLAE-ESFFTWFSDTQEKDTIDGIQDEV 202
                +T IKWK G  M   +     K   KR   E ESFFTWF+D       D   DE+
Sbjct: 150 DPSSKSTEIKWKSGKDMTKRSSQTQNKASRKRQHEEPESFFTWFTDHS-----DAGADEL 204
Query: 203 AEIIKEDLWPNPLTYF 218
            E+IK+D+WPNPL Y+
Sbjct: 205 GEVIKDDIWPNPLQYY 220

>pdb|3KYP|A Chain A, Crystal Structure Of Nucleosome Assembly Protein S (Pfnaps) Plasmodium Falciparum Length = 193

Iteration: 1
 Score =  108 bits (270), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 62/196 (31%), Positives = 108/196 (55%), Gaps = 13/196 (6%)
Query: 27  IEKLQEIQDELEKINEEASEKVLEVEQKYSEIRKPVYDKRNDIIKSIPDFWLTAFISHPA 86
           ++  ++IQ ++E+++ + + + + ++++Y E +KP+++KR++II+ IP FW      HPA
Sbjct: 2   MQDFEDIQKDIEQLDIKCAHEQMNIQKQYDEKKKPLFEKRDEIIQKIPGFWANTLRKHPA 61
Query: 87  LGELLSEEDQKIFRYLSSLEVEDFKDVKSGYSITFNFS--PNPYFEDNKLTKTFTFLDDD 144
           L +++  ED  I  +L  L+++D  D    Y ITF F      + E   L K  TF D++
Sbjct: 62  LSDIVP-EDIDILNHLVKLDLKDNMDNNGSYKITFIFGEKAKEFMEPLTLVKHVTF-DNN 119
Query: 145 GSMKITATSIKWKEGMGIPNGVNHEKKGNKRPLAEESFFTWFSDTQEKDTIDGIQD--EV 202
               +  T IKWKEG      V H +      + + S F WF       T D +QD  +V
Sbjct: 120 QEKVVECTRIKWKEGKNPIAAVTHNRSDLDNEIPKWSIFEWF-------TTDELQDKPDV 172
Query: 203 AEIIKEDLWPNPLTYF 218
            E+I+ ++W NPL+Y+
Sbjct: 173 GELIRREIWHNPLSYY 188

>pdb|3HFD|A Chain A, Nucleosome Assembly Protein 1 From Plasmodium Knowlesi Length = 276

Iteration: 1
 Score = 75.5 bits (184), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 62/237 (26%), Positives = 116/237 (48%), Gaps = 32/237 (13%)
Query: 26  SIEKLQEIQDELEKINEEASEKVLEVEQKYSEIRKPVYDKRNDII----------KSIPD 75
           +++KL+  Q E      +   ++  + QKY ++  P+YDKR + +           ++P+
Sbjct: 20  TLKKLKLYQKEYYDYESKFEYELFLLRQKYHDLYGPIYDKRREALVGNGEAKIGTPNLPE 79
Query: 76  FWLTAFISHPALGELLSEEDQKIFRYLSSLE---VEDFKDVKSGYSITFNFSPNPYFEDN 132
           FWL A  ++  +  ++ + D++I  YL+ +    ++  K+ K G+ ++F+F+PNP+F ++
Sbjct: 80  FWLRALRNNNTVSHVIEDHDEEILVYLNDIRCDYIKKNKEKKEGFILSFHFAPNPFFSNS 139
Query: 133 KLTKTFTF--LDDDGS---MKITATSIKWKEGMGI--PNGVNHEKKGNKR-------PLA 178
            LTKT+    +D D     +   AT I W +   I   N V  +   N R        + 
Sbjct: 140 VLTKTYHMKCVDCDNEPVLLHTEATVIDWYDNKNILKKNVVKKQHNKNSREVKTVQQTVN 199
Query: 179 EESFFTWFSDTQ--EKDTIDGI-QDEVA--EIIKEDLWPNPLTYFNNVIPLPVSFLL 230
            +SFF +F+  +    + I  + + EVA  E+I E  +   LT    +IP  V + L
Sbjct: 200 RDSFFHFFTSHKVPNSNVIKQLSKHEVAQLEMIIEGDYEVALTIKERIIPYAVDYFL 256

>pdb|3GYV|A Chain A, Crystal Structure Of Nucleosome Assembly Protein From Plasmodium Falciparum Length = 249

Iteration: 1
 Score = 70.9 bits (172), Expect = 6e-13,   Method: Compositional matrix adjust.
 Identities = 61/237 (25%), Positives = 114/237 (48%), Gaps = 32/237 (13%)
Query: 26  SIEKLQEIQDELEKINEEASEKVLEVEQKYSEIRKPVYDKRNDIIK----------SIPD 75
           +++KL+  Q E      +   ++  + QKY ++  P+YDKR + +           ++P+
Sbjct: 10  TLKKLKLYQKEYYDYESKFEYELFLLRQKYHDLYGPIYDKRREALVGNGEAKIGTPNLPE 69
Query: 76  FWLTAFISHPALGELLSEEDQKIFRYLSSLE---VEDFKDVKSGYSITFNFSPNPYFEDN 132
           FWL A  ++  +  ++ + D++I  YL+ +    ++  K+ K G+ ++F F+ NP+F ++
Sbjct: 70  FWLRALRNNNTVSHVIEDHDEEILVYLNDIRCDYIKKNKEKKEGFILSFYFATNPFFSNS 129
Query: 133 KLTKTFTF--LDDDGS---MKITATSIKWKEGMGI--PNGVNHEKKGNKR-------PLA 178
            LTKT+    +D D     +   AT I W +   I   N V  +   N R        + 
Sbjct: 130 VLTKTYHMKCVDCDNEPVLLHTEATVIDWYDNKNILKKNVVKKQHNKNSREVKTVQQTVN 189
Query: 179 EESFFTWFSDTQ--EKDTIDGI-QDEVA--EIIKEDLWPNPLTYFNNVIPLPVSFLL 230
            +SFF +F+  +    + I  + + EVA  E+I E  +   LT    +IP  V + L
Sbjct: 190 RDSFFHFFTSHKVPNSNVIKQLSKHEVAQLEMIIEGDYEVALTIKERIIPYAVDYYL 246

>pdb|3FS3|A Chain A, Crystal Structure Of Malaria Parasite Nucleosome Assembly Protein (Nap) Length = 359

Iteration: 1
 Score = 70.1 bits (170), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 61/237 (25%), Positives = 114/237 (48%), Gaps = 32/237 (13%)
Query: 26  SIEKLQEIQDELEKINEEASEKVLEVEQKYSEIRKPVYDKRNDII----------KSIPD 75
           +++KL+  Q E      +   ++  + QKY ++  P+YDKR + +           ++P+
Sbjct: 54  TLKKLKLYQKEYYDYESKFEYELFLLRQKYHDLYGPIYDKRREALVGNGEAKIGTPNLPE 113
Query: 76  FWLTAFISHPALGELLSEEDQKIFRYLSSLE---VEDFKDVKSGYSITFNFSPNPYFEDN 132
           FWL A  ++  +  ++ + D++I  YL+ +    ++  K+ K G+ ++F F+ NP+F ++
Sbjct: 114 FWLRALRNNNTVSHVIEDHDEEILVYLNDIRCDYIKKNKEKKEGFILSFYFATNPFFSNS 173
Query: 133 KLTKTFTF--LDDDGS---MKITATSIKWKEGMGI--PNGVNHEKKGNKR-------PLA 178
            LTKT+    +D D     +   AT I W +   I   N V  +   N R        + 
Sbjct: 174 VLTKTYHMKCVDCDNEPVLLHTEATVIDWYDNKNILKKNVVKKQHNKNSREVKTVQQTVN 233
Query: 179 EESFFTWFSDTQ--EKDTIDGI-QDEVA--EIIKEDLWPNPLTYFNNVIPLPVSFLL 230
            +SFF +F+  +    + I  + + EVA  E+I E  +   LT    +IP  V + L
Sbjct: 234 RDSFFHFFTSHKVPNSNVIKQLSKHEVAQLEMIIEGDYEVALTIKERIIPYAVDYYL 290

>pdb|2Z2R|A Chain A, Nucleosome Assembly Proteins I (Nap-1, 74-365) Length = 292

Iteration: 1
 Score = 57.8 bits (138), Expect = 5e-09,   Method: Compositional matrix adjust.
 Identities = 32/107 (29%), Positives = 55/107 (51%), Gaps = 2/107 (1%)
Query: 41  NEEASEKVLEVEQKYSEIRKPVYDKRNDIIKSIPDFWLTAFISHPALGELLSEEDQKIFR 100
            +E  E + E E    E  K   D   + +K IP FWLTA  + P + + +++ D ++  
Sbjct: 80  GQEIVESLNETELLVDEEEKAQNDSEEEQVKGIPSFWLTALENLPIVCDTITDRDAEVLE 139
Query: 101 YLSSLEVEDFKDVKSGYSITFNF--SPNPYFEDNKLTKTFTFLDDDG 145
           YL  + +E   D + G+ + F F  S NP+F ++ L KT+ +  + G
Sbjct: 140 YLQDIGLEYLTDGRPGFKLLFRFDSSANPFFTNDILCKTYFYQKELG 186

>pdb|2AYU|A Chain A, The Structure Of Nucleosome Assembly Protein Suggests A Mechanism For Histone Binding And Shuttling Length = 417

Iteration: 1
 Score = 57.8 bits (138), Expect = 6e-09,   Method: Compositional matrix adjust.
 Identities = 32/107 (29%), Positives = 55/107 (51%), Gaps = 2/107 (1%)
Query: 41  NEEASEKVLEVEQKYSEIRKPVYDKRNDIIKSIPDFWLTAFISHPALGELLSEEDQKIFR 100
            +E  E + E E    E  K   D   + +K IP FWLTA  + P + + +++ D ++  
Sbjct: 153 GQEIVESLNETELLVDEEEKAQNDSEEEQVKGIPSFWLTALENLPIVCDTITDRDAEVLE 212
Query: 101 YLSSLEVEDFKDVKSGYSITFNF--SPNPYFEDNKLTKTFTFLDDDG 145
           YL  + +E   D + G+ + F F  S NP+F ++ L KT+ +  + G
Sbjct: 213 YLQDIGLEYLTDGRPGFKLLFRFDSSANPFFTNDILCKTYFYQKELG 259

>pdb|3C9D|A Chain A, Crystal Structure Of Vps75 Length = 259

Iteration: 1
 Score = 42.0 bits (97), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 50/206 (24%), Positives = 81/206 (39%), Gaps = 31/206 (15%)
Query: 37  LEKINEEASEKVLEVEQKYSEIRKPVYDKRNDIIKSIPDFWLTAFISHPALGELLSEEDQ 96
           L K  EE      EVE       KPVY+KR+  I  I +FW      H +    +   D 
Sbjct: 18  LAKCEEEVDAIEREVELYRLNKMKPVYEKRDAYIDEIAEFWKIVLSQHVSFANYIRASDF 77
Query: 97  KIFRYLSSLEVE------DFKDVKSGYSITFNFSP-NPYFEDNKLTKTFTFL-----DDD 144
           K    +  ++VE      +  D +  +SITF+F      F++ ++TK F         +D
Sbjct: 78  KYIDTIDKIKVEWLALESEMYDTRD-FSITFHFHGIEGDFKEQQVTKVFQIKKGKDDQED 136
Query: 145 GSMKITATSIKWKEGMG-----------IPNGVNHEKKGNKRPLAEESFFTWFSDTQEKD 193
           G +      I+W +               P G    ++G K      + F WF  T  K 
Sbjct: 137 GILTSEPVPIEWPQSYDSINPDLIKDKRSPEGKKKYRQGMK------TIFGWFRWTGLKP 190
Query: 194 TIDGIQ-DEVAEIIKEDLWPNPLTYF 218
             +    D +A +  E+++P  + Y+
Sbjct: 191 GKEFPHGDSLASLFSEEIYPFCVKYY 216

>pdb|3Q33|B Chain B, Structure Of The Rtt109-AccoaVPS75 COMPLEX AND IMPLICATIONS FOR Chaperone-Mediated Histone Acetylation Length = 232

Iteration: 1
 Score = 42.0 bits (97), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 50/206 (24%), Positives = 81/206 (39%), Gaps = 31/206 (15%)
Query: 37  LEKINEEASEKVLEVEQKYSEIRKPVYDKRNDIIKSIPDFWLTAFISHPALGELLSEEDQ 96
           L K  EE      EVE       KPVY+KR+  I  I +FW      H +    +   D 
Sbjct: 18  LAKCEEEVDAIEREVELYRLNKMKPVYEKRDAYIDEIAEFWKIVLSQHVSFANYIRASDF 77
Query: 97  KIFRYLSSLEVE------DFKDVKSGYSITFNFSP-NPYFEDNKLTKTFTFL-----DDD 144
           K    +  ++VE      +  D +  +SITF+F      F++ ++TK F         +D
Sbjct: 78  KYIDTIDKIKVEWLALESEMYDTRD-FSITFHFHGIEGDFKEQQVTKVFQIKKGKDDQED 136
Query: 145 GSMKITATSIKWKEGMG-----------IPNGVNHEKKGNKRPLAEESFFTWFSDTQEKD 193
           G +      I+W +               P G    ++G K      + F WF  T  K 
Sbjct: 137 GILTSEPVPIEWPQSYDSINPDLIKDKRSPEGKKKYRQGMK------TIFGWFRWTGLKP 190
Query: 194 TIDGIQ-DEVAEIIKEDLWPNPLTYF 218
             +    D +A +  E+++P  + Y+
Sbjct: 191 GKEFPHGDSLASLFSEEIYPFCVKYY 216

>pdb|2ZD7|A Chain A, The Structure Of Vps75 (Vacuolar Protein Sorting-Associated Protein 75) Length = 264

Iteration: 1
 Score = 42.0 bits (97), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 50/206 (24%), Positives = 81/206 (39%), Gaps = 31/206 (15%)
Query: 37  LEKINEEASEKVLEVEQKYSEIRKPVYDKRNDIIKSIPDFWLTAFISHPALGELLSEEDQ 96
           L K  EE      EVE       KPVY+KR+  I  I +FW      H +    +   D 
Sbjct: 18  LAKCEEEVDAIEREVELYRLNKMKPVYEKRDAYIDEIAEFWKIVLSQHVSFANYIRASDF 77
Query: 97  KIFRYLSSLEVE------DFKDVKSGYSITFNFSP-NPYFEDNKLTKTFTFL-----DDD 144
           K    +  ++VE      +  D +  +SITF+F      F++ ++TK F         +D
Sbjct: 78  KYIDTIDKIKVEWLALESEMYDTRD-FSITFHFHGIEGDFKEQQVTKVFQIKKGKDDQED 136
Query: 145 GSMKITATSIKWKEGMG-----------IPNGVNHEKKGNKRPLAEESFFTWFSDTQEKD 193
           G +      I+W +               P G    ++G K      + F WF  T  K 
Sbjct: 137 GILTSEPVPIEWPQSYDSINPDLIKDKRSPEGKKKYRQGMK------TIFGWFRWTGLKP 190
Query: 194 TIDGIQ-DEVAEIIKEDLWPNPLTYF 218
             +    D +A +  E+++P  + Y+
Sbjct: 191 GKEFPHGDSLASLFSEEIYPFCVKYY 216

>pdb|3C9B|A Chain A, Crystal Structure Of Semet Vps75 Length = 259

Iteration: 1
 Score = 41.6 bits (96), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 51/209 (24%), Positives = 81/209 (38%), Gaps = 37/209 (17%)
Query: 37  LEKINEEASEKVLEVEQKYSEIRKPVYDKRNDIIKSIPDFWLTAFISHPALGELLSEEDQ 96
           L K  EE      EVE       KPVY+KR+  I  I +FW      H +    +   D 
Sbjct: 18  LAKCEEEVDAIEREVELYRLNKXKPVYEKRDAYIDEIAEFWKIVLSQHVSFANYIRASDF 77
Query: 97  KIFRYLSSLEVE---------DFKDVKSGYSITFNFSP-NPYFEDNKLTKTFTFL----- 141
           K    +  ++VE         D +D    +SITF+F      F++ ++TK F        
Sbjct: 78  KYIDTIDKIKVEWLALESEXYDTRD----FSITFHFHGIEGDFKEQQVTKVFQIKKGKDD 133
Query: 142 DDDGSMKITATSIKWKEGMG-----------IPNGVNHEKKGNKRPLAEESFFTWFSDTQ 190
            +DG +      I+W +               P G    ++G K      + F WF  T 
Sbjct: 134 QEDGILTSEPVPIEWPQSYDSINPDLIKDKRSPEGKKKYRQGXK------TIFGWFRWTG 187
Query: 191 EKDTIDGIQ-DEVAEIIKEDLWPNPLTYF 218
            K   +    D +A +  E+++P  + Y+
Sbjct: 188 LKPGKEFPHGDSLASLFSEEIYPFCVKYY 216

>pdb|3DM7|A Chain A, Crystal Structure Of The Vps75 Histone Chaperone Length = 234

Iteration: 1
 Score = 40.8 bits (94), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 50/208 (24%), Positives = 80/208 (38%), Gaps = 35/208 (16%)
Query: 37  LEKINEEASEKVLEVEQKYSEIRKPVYDKRNDIIKSIPDFWLTAFISHPALGELLSEEDQ 96
           L K  EE      EVE       KPVY+KR+  I  I +FW      H +    +   D 
Sbjct: 20  LAKCEEEVDAIEREVELYRLNKXKPVYEKRDAYIDEIAEFWKIVLSQHVSFANYIRASDF 79
Query: 97  KIFRYLSSLEVE---------DFKDVKSGYSITFNFSP-NPYFEDNKLTKTFTFL----- 141
           K    +  ++VE         D +D    +SITF+F      F++ ++TK F        
Sbjct: 80  KYXDTIDKIKVEWLALESEXYDTRD----FSITFHFHGIEGDFKEQQVTKVFQIKKGKDD 135
Query: 142 DDDGSMKITATSIKWKEGMG-----------IPNGVNHEKKGNKRPLAEESFFTWFSDTQ 190
            +DG +      I+W +               P G    ++G K       +F W     
Sbjct: 136 QEDGILTSEPVPIEWPQSYDSINPDLXKDKRSPEGKKKYRQGXKTIFG---WFRWTGLKP 192
Query: 191 EKDTIDGIQDEVAEIIKEDLWPNPLTYF 218
            K+   G  D +A +  E+++P  + Y+
Sbjct: 193 GKEFPHG--DSLASLFSEEIYPFCVKYY 218

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	243
2e50_A	225	Protein SET; histone chaperone, inhat, PP2AI, prot	5e-58
3kyp_A	193	Pfnaps, nucleosome assembly protein; histone recog	1e-51
2zd7_A	264	VPS75, vacuolar protein sorting-associated protein	1e-45
3fs3_A	359	Nucleosome assembly protein 1, putative; protein l	3e-38
2ayu_A	417	Nucleosome assembly protein; histone chaperone; 3.	1e-33
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	2e-04

>2e50_A Protein SET; histone chaperone, inhat, PP2AI, protein binding; HET: TRE; 2.30A {Homo sapiens} SCOP: d.305.1.1 Length = 225

 Score =  182 bits (464), Expect = 5e-58
 Identities = 87/222 (39%), Positives = 139/222 (62%), Gaps = 12/222 (5%)

Query: 3   ADKGKKTKVEEENAEQIDS---ELVLSIEKLQEIQDELEKINEEASEKVLEVEQKYSEIR 59
           A K  K ++   +    ++   E   +IE + E+Q+E++++NE+ASE++L+VEQKY+++R
Sbjct: 5   AAKVSKKELNSNHDGADETSEKEQQEAIEHIDEVQNEIDRLNEQASEEILKVEQKYNKLR 64

Query: 60  KPVYDKRNDIIKSIPDFWLTAFISHPALGELLSEEDQKIFRYLSSLEVEDFKDVKSGYSI 119
           +P + KR+++I  IP+FW+T F++HP +  LL EED++   YL+ +EV +F+D+KSGY I
Sbjct: 65  QPFFQKRSELIAKIPNFWVTTFVNHPQVSALLGEEDEEAMHYLTRVEVTEFEDIKSGYRI 124

Query: 120 TFNFSPNPYFEDNKLTKTFTFLDDDGSMKITATSIKWKEGMGIPNGVNHEKKGNKR---P 176
            F F  NPYFE+  L+K F   ++ G     +T IKWK G  +    +  +    R    
Sbjct: 125 DFYFDENPYFENKVLSKEFHM-NESGDPSSKSTEIKWKSGKDMTKRSSQTQNKASRKRQH 183

Query: 177 LAEESFFTWFSDTQEKDTIDGIQDEVAEIIKEDLWPNPLTYF 218
              ESFFTWF+D  +        DE+ E+IK+D+WPNPL Y+
Sbjct: 184 EEPESFFTWFTDHSDAG-----ADELGEVIKDDIWPNPLQYY 220

>3kyp_A Pfnaps, nucleosome assembly protein; histone recognition, chaperone; 2.80A {Plasmodium falciparum} Length = 193

 Score =  165 bits (418), Expect = 1e-51
 Identities = 59/194 (30%), Positives = 108/194 (55%), Gaps = 9/194 (4%)

Query: 27  IEKLQEIQDELEKINEEASEKVLEVEQKYSEIRKPVYDKRNDIIKSIPDFWLTAFISHPA 86
           ++  ++IQ ++E+++ + + + + ++++Y E +KP+++KR++II+ IP FW      HPA
Sbjct: 2   MQDFEDIQKDIEQLDIKCAHEQMNIQKQYDEKKKPLFEKRDEIIQKIPGFWANTLRKHPA 61

Query: 87  LGELLSEEDQKIFRYLSSLEVEDFKDVKSGYSITFNFS--PNPYFEDNKLTKTFTFLDDD 144
           L +++  ED  I  +L  L+++D  D    Y ITF F      + E   L K  TF D++
Sbjct: 62  LSDIV-PEDIDILNHLVKLDLKDNMDNNGSYKITFIFGEKAKEFMEPLTLVKHVTF-DNN 119

Query: 145 GSMKITATSIKWKEGMGIPNGVNHEKKGNKRPLAEESFFTWFSDTQEKDTIDGIQDEVAE 204
               +  T IKWKEG      V H +      + + S F WF+  + +D     + +V E
Sbjct: 120 QEKVVECTRIKWKEGKNPIAAVTHNRSDLDNEIPKWSIFEWFTTDELQD-----KPDVGE 174

Query: 205 IIKEDLWPNPLTYF 218
           +I+ ++W NPL+Y+
Sbjct: 175 LIRREIWHNPLSYY 188

>2zd7_A VPS75, vacuolar protein sorting-associated protein 75; histone chaperone, VPS75, NAP1, nucleus, phosphoprotein; 1.85A {Saccharomyces cerevisiae} PDB: 3q66_A* 3q68_A* 3c9d_A 3c9b_A 3q33_B* 3q35_B* 3dm7_A Length = 264

 Score =  152 bits (385), Expect = 1e-45
 Identities = 47/219 (21%), Positives = 86/219 (39%), Gaps = 24/219 (10%)

Query: 17  EQIDSELVLSIEKLQEIQDELEKINEEASEKVLEVEQKYSEIRKPVYDKRNDIIKSIPDF 76
           ++ ++E   +   L + ++E++ I  E        E       KPVY+KR+  I  I +F
Sbjct: 5   QENENEHAKAFLGLAKCEEEVDAIEREV-------ELYRLNKMKPVYEKRDAYIDEIAEF 57

Query: 77  WLTAFISHPALGELLSEEDQKIFRYLSSLEVEDFKDVKS-----GYSITFNFS-PNPYFE 130
           W      H +    +   D K    +  ++VE             +SITF+F      F+
Sbjct: 58  WKIVLSQHVSFANYIRASDFKYIDTIDKIKVEWLALESEMYDTRDFSITFHFHGIEGDFK 117

Query: 131 DNKLTKTFTFL-----DDDGSMKITATSIKWKEGMGIPNGVNHEKKGN-----KRPLAEE 180
           + ++TK F         +DG +      I+W +     N    + K +     K     +
Sbjct: 118 EQQVTKVFQIKKGKDDQEDGILTSEPVPIEWPQSYDSINPDLIKDKRSPEGKKKYRQGMK 177

Query: 181 SFFTWFSDTQEK-DTIDGIQDEVAEIIKEDLWPNPLTYF 218
           + F WF  T  K        D +A +  E+++P  + Y+
Sbjct: 178 TIFGWFRWTGLKPGKEFPHGDSLASLFSEEIYPFCVKYY 216

>3fs3_A Nucleosome assembly protein 1, putative; protein localization, histone recognition, structural analysis, CHA; 2.30A {Plasmodium falciparum} PDB: 3hfd_A 3gyw_A 3gyv_A Length = 359

 Score =  135 bits (340), Expect = 3e-38
 Identities = 57/263 (21%), Positives = 116/263 (44%), Gaps = 43/263 (16%)

Query: 3   ADKGKKTKVEEENAEQIDSELVLSIEKLQEIQDELEKINEEASEKVLEVEQKYSEIRKPV 62
           + K +   + ++    +  E   +++KL+  Q E      +   ++  + QKY ++  P+
Sbjct: 31  SLKYRCFYLYDDKMTDLTEEQKETLKKLKLYQKEYYDYESKFEYELFLLRQKYHDLYGPI 90

Query: 63  YDKRNDII----------KSIPDFWLTAFISHPALGELLSEEDQKIFRYLSSLEVE---D 109
           YDKR + +           ++P+FWL A  ++  +  ++ + D++I  YL+ +  +    
Sbjct: 91  YDKRREALVGNGEAKIGTPNLPEFWLRALRNNNTVSHVIEDHDEEILVYLNDIRCDYIKK 150

Query: 110 FKDVKSGYSITFNFSPNPYFEDNKLTKTFTF-----LDDDGSMKITATSIKWKEGMGIPN 164
            K+ K G+ ++F F+ NP+F ++ LTKT+        ++   +   AT I W +   I  
Sbjct: 151 NKEKKEGFILSFYFATNPFFSNSVLTKTYHMKCVDCDNEPVLLHTEATVIDWYDNKNILK 210

Query: 165 GVNHEKKGNKR---------PLAEESFFTWFS----------------DTQEKDTIDGIQ 199
               +K+ NK           +  +SFF +F+                +  + + I    
Sbjct: 211 KNVVKKQHNKNSREVKTVQQTVNRDSFFHFFTSHKVPNSNVIKQLSKHEVAQLEMIIEGD 270

Query: 200 DEVAEIIKEDLWPNPLTYFNNVI 222
            EVA  IKE + P  + Y+  +I
Sbjct: 271 YEVALTIKERIIPYAVDYYLGII 293

>2ayu_A Nucleosome assembly protein; histone chaperone; 3.00A {Saccharomyces cerevisiae} SCOP: d.305.1.1 PDB: 2z2r_A Length = 417

 Score =  124 bits (311), Expect = 1e-33
 Identities = 50/265 (18%), Positives = 102/265 (38%), Gaps = 73/265 (27%)

Query: 27  IEKLQEIQDELEKINEEASEKVLEVEQKYSEIRKPVYDKRNDI----------------- 69
           +  L+ +Q EL ++ +E   ++ E+E K+ +  KP++++R+ I                 
Sbjct: 96  LLSLKTLQSELFEVEKEFQVEMFELENKFLQKYKPIWEQRSRIISGQEQPKPEQIAKGQE 155

Query: 70  --------------------------IKSIPDFWLTAFISHPALGELLSEEDQKIFRYLS 103
                                     +K IP FWLTA  + P + + +++ D ++  YL 
Sbjct: 156 IVESLNETELLVDEEEKAQNDSEEEQVKGIPSFWLTALENLPIVCDTITDRDAEVLEYLQ 215

Query: 104 SLEVEDFKDVKSGYSITF--NFSPNPYFEDNKLTKTFTFLDDDGSM------KITATSIK 155
            + +E   D + G+ + F  + S NP+F ++ L KT+ +  + G              I 
Sbjct: 216 DIGLEYLTDGRPGFKLLFRFDSSANPFFTNDILCKTYFYQKELGYSGDFIYDHAEGCEIS 275

Query: 156 WKEGMGI----------PNGVNHEKKGNKRPLAEESFFTWFSDTQ------------EKD 193
           WK+               N    + +  ++    ESFF +F   +            + +
Sbjct: 276 WKDNAHNVTVDLEMRKQRNKTTKQVRTIEKITPIESFFNFFDPPKIQNEDQDEELEEDLE 335

Query: 194 TIDGIQDEVAEIIKEDLWPNPLTYF 218
               +   + E +K+ L P  + +F
Sbjct: 336 ERLALDYSIGEQLKDKLIPRAVDWF 360

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 41.0 bits (95), Expect = 2e-04
 Identities = 43/247 (17%), Positives = 75/247 (30%), Gaps = 67/247 (27%)

Query: 24  VLSIEKLQ--EIQDELE-KI------NEEASEKVLEVEQKYSEIRKPVYDKRNDIIKSIP 74
            ++++     ++Q +++ KI      N  + E VLE+ QK      P +  R+D   +I 
Sbjct: 165 WVALDVCLSYKVQCKMDFKIFWLNLKNCNSPETVLEMLQKLLYQIDPNWTSRSDHSSNIK 224

Query: 75  DFWLTAFISHPALGELLSEEDQKIFRYLSSLEVEDFKDVKSGYSI-TFNFS--------- 124
              L        L  LL  +      Y + L V    +V++  +   FN S         
Sbjct: 225 ---LRIHSIQAELRRLLKSK-----PYENCLLVLL--NVQNAKAWNAFNLSCKILLTTRF 274

Query: 125 ----------PNPYFEDNKLTKTFTFLDDDGSMKITATSIKWKEGMGIPNGVNHE-KKGN 173
                        +   +  + T T    D    +    +  +    +P     E    N
Sbjct: 275 KQVTDFLSAATTTHISLDHHSMTLT---PDEVKSLLLKYLDCRPQD-LP----REVLTTN 326

Query: 174 KRPLAEESFFTWFSDTQEKDTIDGIQ----DEVAEIIK---EDLWPNPL-TYFNNVIPLP 225
             P           D     T D  +    D++  II+     L P      F       
Sbjct: 327 --PRRLSIIAESIRD--GLATWDNWKHVNCDKLTTIIESSLNVLEPAEYRKMF------- 375

Query: 226 VSFLLFP 232
               +FP
Sbjct: 376 DRLSVFP 382

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	243
2e50_A	225	Protein SET; histone chaperone, inhat, PP2AI, prot	100.0
3fs3_A	359	Nucleosome assembly protein 1, putative; protein l	100.0
3kyp_A	193	Pfnaps, nucleosome assembly protein; histone recog	100.0
2ayu_A	417	Nucleosome assembly protein; histone chaperone; 3.	100.0
2zd7_A	264	VPS75, vacuolar protein sorting-associated protein	100.0
2jo8_A	51	Serine/threonine-protein kinase 4; C-terminal doma	94.32
2p2u_A	171	HOST-nuclease inhibitor protein GAM, putative; str	92.93

>2e50_A Protein SET; histone chaperone, inhat, PP2AI, protein binding; HET: TRE; 2.30A {Homo sapiens} SCOP: d.305.1.1

Probab=100.00  E-value=2.4e-63  Score=431.60  Aligned_cols=214  Identities=43%  Similarity=0.832  Sum_probs=174.5

Q ss_pred             CCCCccccchhhhh-----hccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHhhhhhhccccc
Q 026110            1 MVADKGKKTKVEEE-----NAEQIDSELVLSIEKLQEIQDELEKINEEASEKVLEVEQKYSEIRKPVYDKRNDIIKSIPD   75 (243)
Q Consensus         1 ~~~~~~~~~~~~~e-----~~~~~~~~v~~~~~~L~~lQ~el~~le~e~~~e~~~le~ky~k~~~Ply~kR~eiI~~IP~   75 (243)
                      |++|.+||.|.+++     +....++++++++++|+.||.+++++++++.+|+++||+||+++++|+|++|++||+|||+
T Consensus         1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~iQ~e~~~l~~e~~~ev~~lE~ky~~~~~Ply~kR~eII~~IP~   80 (225)
T 2e50_A            1 MSAQAAKVSKKELNSNHDGADETSEKEQQEAIEHIDEVQNEIDRLNEQASEEILKVEQKYNKLRQPFFQKRSELIAKIPN   80 (225)
T ss_dssp             CHHHHHHHHHHHTTC-----CTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSTT
T ss_pred             CCCCcccccccccccccccccccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHhcccc
Confidence            88999999999764     4466889999999999999999999999999999999999999999999999999999999


Q ss_pred             hHHHHHhcChhhhccCChhhHHhhcCcceeEEEEccCCCcceEEEEEecCCCcccCCeEEEEEEeeCCCCCccccccccc
Q 026110           76 FWLTAFISHPALGELLSEEDQKIFRYLSSLEVEDFKDVKSGYSITFNFSPNPYFEDNKLTKTFTFLDDDGSMKITATSIK  155 (243)
Q Consensus        76 FW~~vl~n~~~l~~~i~~~D~~iL~~L~dI~Ve~~~d~~~~f~i~F~F~~NpyF~N~~L~K~~~~~~~~g~~~~~~t~I~  155 (243)
                      ||++||+||+.++.+|+++|+++|+||+||+|++.+++..||+|+|+|++||||+|++|+|+|++.. +|.+++++|+|+
T Consensus        81 FW~tal~n~~~l~~~i~e~De~iL~~L~dI~v~~~~d~~~gf~i~F~F~~N~yF~N~vLtK~y~~~~-~g~~~s~~t~I~  159 (225)
T 2e50_A           81 FWVTTFVNHPQVSALLGEEDEEAMHYLTRVEVTEFEDIKSGYRIDFYFDENPYFENKVLSKEFHMNE-SGDPSSKSTEIK  159 (225)
T ss_dssp             HHHHHHHTSHHHHTTCCHHHHHHGGGEEEEEEEECCSSCCCEEEEEEECSCSSBSCSEEEEEEC--------CEEECCCC
T ss_pred             HHHHHHhcChhhhhhccHhHHHHHHhcCeeEEEEccCCCCceEEEEEeCCCCCccCCEEEEEEEecC-CCCcccCCCcce
Confidence            9999999999999999999999999999999999988789999999999999999999999999988 888889999999


Q ss_pred             ccCCCCCCCcccccc--CCCCccc-cccccccccccccCCCccCCchhHHHHHHhhccccchhhhccc
Q 026110          156 WKEGMGIPNGVNHEK--KGNKRPL-AEESFFTWFSDTQEKDTIDGIQDEVAEIIKEDLWPNPLTYFNN  220 (243)
Q Consensus       156 Wk~gk~lt~~~~~~k--~~~~r~~-~~~SFF~~F~~~~~~~~~e~~~~ei~~~i~d~i~p~al~yy~~  220 (243)
                      ||+|+++|++...++  +|++|.. +..|||+||+++..+     .+++||++|+|+||||||+||+.
T Consensus       160 Wk~gkd~t~~~~~kk~~~~~~r~~~~~~SFF~fF~~~~~~-----~~~eige~ikd~i~P~av~yy~~  222 (225)
T 2e50_A          160 WKSGKDMTKRSSQTQNKASRKRQHEEPESFFTWFTDHSDA-----GADELGEVIKDDIWPNPLQYYLV  222 (225)
T ss_dssp             BCSSCCC----------------------CGGGGC-----------CHHHHHHHHHTTTTCSHHHHCC
T ss_pred             ecCCCCccchhhhhcccccCcccCCCCCCcceecCCCCCC-----chhHHHHHHHhCccccHHHHhcC
Confidence            999999998765443  3444543 468999999998765     35899999999999999999984

>3fs3_A Nucleosome assembly protein 1, putative; protein localization, histone recognition, structural analysis, CHA; 2.30A {Plasmodium falciparum} PDB: 3hfd_A 3gyw_A 3gyv_A

Probab=100.00  E-value=4.1e-59  Score=425.61  Aligned_cols=217  Identities=26%  Similarity=0.488  Sum_probs=171.4

Q ss_pred             hhhhccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHhhhhhhc----------cccchHHHHH
Q 026110           12 EEENAEQIDSELVLSIEKLQEIQDELEKINEEASEKVLEVEQKYSEIRKPVYDKRNDIIK----------SIPDFWLTAF   81 (243)
Q Consensus        12 ~~e~~~~~~~~v~~~~~~L~~lQ~el~~le~e~~~e~~~le~ky~k~~~Ply~kR~eiI~----------~IP~FW~~vl   81 (243)
                      +.+++..||++|+++|.+|+.||.+++++++++.+++++|++||+++++|+|++|++||+          |||+||++||
T Consensus        40 ~~~~m~sLp~~v~~rI~aLk~lQ~E~~~le~ef~eEv~~LE~KY~kl~qPLyeKR~eII~G~~e~e~~~kgIP~FWltvl  119 (359)
T 3fs3_A           40 YDDKMTDLTEEQKETLKKLKLYQKEYYDYESKFEYELFLLRQKYHDLYGPIYDKRREALVGNGEAKIGTPNLPEFWLRAL  119 (359)
T ss_dssp             -----CCSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC---CCSSSTTSTTHHHHHH
T ss_pred             hhhhhhhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHcCccccccccCCCCcHHHHHH
Confidence            468899999999999999999999999999999999999999999999999999999998          8999999999


Q ss_pred             hcChhhhccCChhhHHhhcCcceeEEEEcc---CCCcceEEEEEecCCCcccCCeEEEEEEeeCC--CCCc---cccccc
Q 026110           82 ISHPALGELLSEEDQKIFRYLSSLEVEDFK---DVKSGYSITFNFSPNPYFEDNKLTKTFTFLDD--DGSM---KITATS  153 (243)
Q Consensus        82 ~n~~~l~~~i~~~D~~iL~~L~dI~Ve~~~---d~~~~f~i~F~F~~NpyF~N~~L~K~~~~~~~--~g~~---~~~~t~  153 (243)
                      .||++++.+|+++|+++|+||+||+|++..   +.+.||+|+|+|++||||+|++|+|+|++...  +|.+   .++||+
T Consensus       120 ~Nhp~ls~~I~e~De~iL~yL~DI~Ve~l~~~~~~~~gfkI~F~F~eNpYF~N~vLtKey~l~~~~~~~dp~~~~se~t~  199 (359)
T 3fs3_A          120 RNNNTVSHVIEDHDEEILVYLNDIRCDYIKKNKEKKEGFILSFYFATNPFFSNSVLTKTYHMKCVDCDNEPVLLHTEATV  199 (359)
T ss_dssp             HTSHHHHTTCCHHHHHHHTTEEEEEEEECC-------CEEEEEEECSCSSBCCSEEEEEEEEC--------CEEEEEECC
T ss_pred             HhchHHHHhccHhHHHHHhhcceeEEEEeccCCCCCCceEEEEEeCCCCcccCCEEEEEEEEeccCCCCCcccccceeee
Confidence            999999999999999999999999999863   45799999999999999999999999999752  2222   469999


Q ss_pred             ccccCCCCCCCccccccCCCC-----c----cccccccccccccccCCCccC----------------CchhHHHHHHhh
Q 026110          154 IKWKEGMGIPNGVNHEKKGNK-----R----PLAEESFFTWFSDTQEKDTID----------------GIQDEVAEIIKE  208 (243)
Q Consensus       154 I~Wk~gk~lt~~~~~~k~~~~-----r----~~~~~SFF~~F~~~~~~~~~e----------------~~~~ei~~~i~d  208 (243)
                      |+||+|+++|++...+|++++     |    +.+..|||+||+++..++..+                +.|++||++|++
T Consensus       200 I~WK~GKdlT~k~~~kKqr~K~t~~~R~v~k~~~~eSFFnfFspp~~p~~de~~~~de~~~~~~e~~l~~DfeIGe~Ikd  279 (359)
T 3fs3_A          200 IDWYDNKNILKKNVVKKQHNKNSREVKTVQQTVNRDSFFHFFTSHKVPNSNVIKQLSKHEVAQLEMIIEGDYEVALTIKE  279 (359)
T ss_dssp             CCBCTTCCTTCC----------------------CCCGGGGSCCBCC------------CHHHHHHHHHHHHHHHHHHHH
T ss_pred             eeEeCCCccchhhhhhhccccCCCCceeeeccCCCCCceeeCCCCCCCCcccccccchhhhHHHHHHHHHhHHHHHHHHh
Confidence            999999999988765443332     2    246799999999998764321                147899999999


Q ss_pred             ccccchhhhccccCCCCcce
Q 026110          209 DLWPNPLTYFNNVIPLPVSF  228 (243)
Q Consensus       209 ~i~p~al~yy~~~~~~~~~~  228 (243)
                      +|||+||+||+|+.-+..+-
T Consensus       280 ~IiP~av~yftGea~e~e~~  299 (359)
T 3fs3_A          280 RIIPYAVDYYLGIIIESESN  299 (359)
T ss_dssp             THHHHHHHHHTTCC------
T ss_pred             ceecChHHhhCCcccccccC
Confidence            99999999999998766543

>3kyp_A Pfnaps, nucleosome assembly protein; histone recognition, chaperone; 2.80A {Plasmodium falciparum}

Probab=100.00  E-value=2.3e-59  Score=398.26  Aligned_cols=189  Identities=30%  Similarity=0.662  Sum_probs=160.1

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHhhhhhhccccchHHHHHhcChhhhccCChhhHHhhcCcceeE
Q 026110           27 IEKLQEIQDELEKINEEASEKVLEVEQKYSEIRKPVYDKRNDIIKSIPDFWLTAFISHPALGELLSEEDQKIFRYLSSLE  106 (243)
Q Consensus        27 ~~~L~~lQ~el~~le~e~~~e~~~le~ky~k~~~Ply~kR~eiI~~IP~FW~~vl~n~~~l~~~i~~~D~~iL~~L~dI~  106 (243)
                      +++|++||.+++++++++++++++||+||+++++|+|++|++||++||+||++||+||++++.++ ++|+++|+||+||+
T Consensus         2 ~~~L~~iQ~e~~~l~~~~~~e~~~le~ky~~~~~p~y~kR~~iI~~IP~FW~t~l~n~~~ls~i~-~~De~~L~~L~di~   80 (193)
T 3kyp_A            2 MQDFEDIQKDIEQLDIKCAHEQMNIQKQYDEKKKPLFEKRDEIIQKIPGFWANTLRKHPALSDIV-PEDIDILNHLVKLD   80 (193)
T ss_dssp             CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSTTTTHHHHTTSSSSTTSS-CHHHHTTCCCCEEC
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchHHHHHHHHhcCCccHHHHHHHcCchHHHHH-HhhHHHHcCcceEE
Confidence            57899999999999999999999999999999999999999999999999999999999999876 69999999999999


Q ss_pred             EEEccCCCcceEEEEEecC--CCcccCCeEEEEEEeeCCCCCcccccccccccCCCCCCCccccccCCCCcccccccccc
Q 026110          107 VEDFKDVKSGYSITFNFSP--NPYFEDNKLTKTFTFLDDDGSMKITATSIKWKEGMGIPNGVNHEKKGNKRPLAEESFFT  184 (243)
Q Consensus       107 Ve~~~d~~~~f~i~F~F~~--NpyF~N~~L~K~~~~~~~~g~~~~~~t~I~Wk~gk~lt~~~~~~k~~~~r~~~~~SFF~  184 (243)
                      |++..+++.||+|+|+|++  ||||+|++|+|+|++.. +|+.++++|+|+||+|+|+|+....+|++.++..+..|||+
T Consensus        81 v~~~~~~~~gf~i~F~F~~n~N~yF~N~vLtK~y~~~~-~g~~~~~~t~I~Wk~gk~~t~~~~~kr~~~~~~~~~~SFF~  159 (193)
T 3kyp_A           81 LKDNMDNNGSYKITFIFGEKAKEFMEPLTLVKHVTFDN-NQEKVVECTRIKWKEGKNPIAAVTHNRSDLDNEIPKWSIFE  159 (193)
T ss_dssp             CBCCSSSSCCCEEEEECSCCSSCSCSCEEEECCCCCC-----CCCCCCCCCCCSSCCCCC--------------CCCTTT
T ss_pred             EEEccCCCCceEEEEEEcCCCCccccCceEEEEEEEcC-CCCeeeccceeeeecCCCcchhhhhccccccccCCcchHhh
Confidence            9988777889999999998  89999999999999988 78888999999999999999765444333334457799999


Q ss_pred             ccccccCCCccCCchhHHHHHHhhccccchhhhccccC
Q 026110          185 WFSDTQEKDTIDGIQDEVAEIIKEDLWPNPLTYFNNVI  222 (243)
Q Consensus       185 ~F~~~~~~~~~e~~~~ei~~~i~d~i~p~al~yy~~~~  222 (243)
                      ||+++..+     ++++||++|+|+||||||+||+|+.
T Consensus       160 wF~~~~~~-----~~~eige~ikd~i~P~~l~yy~ge~  192 (193)
T 3kyp_A          160 WFTTDELQ-----DKPDVGELIRREIWHNPLSYYLGLE  192 (193)
T ss_dssp             TCCSSCCT-----TTTCTTHHHHTTTTTCHHHHHC---
T ss_pred             hcCCCCcC-----CchHHHHHHHhCeeeCHHHHhCCCC
Confidence            99998765     5789999999999999999999975

>2ayu_A Nucleosome assembly protein; histone chaperone; 3.00A {Saccharomyces cerevisiae} SCOP: d.305.1.1 PDB: 2z2r_A

Probab=100.00  E-value=5.7e-57  Score=420.53  Aligned_cols=210  Identities=26%  Similarity=0.559  Sum_probs=185.6

Q ss_pred             hhhccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHhhhhhh----------------------
Q 026110           13 EENAEQIDSELVLSIEKLQEIQDELEKINEEASEKVLEVEQKYSEIRKPVYDKRNDII----------------------   70 (243)
Q Consensus        13 ~e~~~~~~~~v~~~~~~L~~lQ~el~~le~e~~~e~~~le~ky~k~~~Ply~kR~eiI----------------------   70 (243)
                      .+++.+||++|+++|.+|+.||.++.++++++.+++++|++||.++++|+|++|++||                      
T Consensus        82 ~~~i~sLp~~v~~rI~aLk~lQ~e~~~le~ef~~ev~eLE~Ky~~~~~PLy~KR~eII~G~~ept~eE~~~~~~~~~~~~  161 (417)
T 2ayu_A           82 SGYVGGLPKNVKEKLLSLKTLQSELFEVEKEFQVEMFELENKFLQKYKPIWEQRSRIISGQEQPKPEQIAKGQEIVESLN  161 (417)
T ss_dssp             HHHHHHSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSSCCCHHHHHHHHHHHHHTT
T ss_pred             cchhhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCchhhhcccccccchhh
Confidence            3678999999999999999999999999999999999999999999999999999998                      


Q ss_pred             ---------------------ccccchHHHHHhcChhhhccCChhhHHhhcCcceeEEEEccCCCcceEEEEEe--cCCC
Q 026110           71 ---------------------KSIPDFWLTAFISHPALGELLSEEDQKIFRYLSSLEVEDFKDVKSGYSITFNF--SPNP  127 (243)
Q Consensus        71 ---------------------~~IP~FW~~vl~n~~~l~~~i~~~D~~iL~~L~dI~Ve~~~d~~~~f~i~F~F--~~Np  127 (243)
                                           +|||+||++||+||+.|+.+|+++|++||+||+||+|++..++..||+|+|+|  .+||
T Consensus       162 ~~~~~~~~~~~~~~~~~~~~~kgIP~FWltalkN~~~lse~I~e~De~iLk~L~DI~Ve~~~d~~~gF~L~F~F~~~~Np  241 (417)
T 2ayu_A          162 ETELLVDEEEKAQNDSEEEQVKGIPSFWLTALENLPIVCDTITDRDAEVLEYLQDIGLEYLTDGRPGFKLLFRFDSSANP  241 (417)
T ss_dssp             CGGGCCSSCC---------CCSSCTTHHHHHHHTSTTGGGTCCHHHHTGGGGEEEEECCBCCSSSCEEEEEEEECTTTCS
T ss_pred             hhhhhhhhhhhcccccccccccCCccHHHHHHHcChHHHHhhhhhhHHHHhhccceEEEEccCCCcceEEEEEeCCCCCc
Confidence                                 68999999999999999999999999999999999999988768899999999  9999


Q ss_pred             cccCCeEEEEEEeeCCC---CCc---ccccccccccC-CCCCCCccccccCCC-----Ccc----ccccccccccccccC
Q 026110          128 YFEDNKLTKTFTFLDDD---GSM---KITATSIKWKE-GMGIPNGVNHEKKGN-----KRP----LAEESFFTWFSDTQE  191 (243)
Q Consensus       128 yF~N~~L~K~~~~~~~~---g~~---~~~~t~I~Wk~-gk~lt~~~~~~k~~~-----~r~----~~~~SFF~~F~~~~~  191 (243)
                      ||+|++|||+|++....   |+.   .++||+|+||+ |+|||++...+|+++     .|+    ++..||||||+++..
T Consensus       242 YF~N~vLtKtY~~~~e~~~~g~~~~~~~egt~I~WK~~GknlT~k~~kkKqr~K~~~~~R~v~k~v~~~SFFnfFspp~~  321 (417)
T 2ayu_A          242 FFTNDILCKTYFYQKELGYSGDFIYDHAEGCEISWKDNAHNVTVDLEMRKQRNKTTKQVRTIEKITPIESFFNFFDPPKI  321 (417)
T ss_dssp             SBCCSEEEEEEEEESSCCSSSSCEEEEEEECCCCBSCTTTCTTEEEEECCC---------CCEEEEECCCGGGGGSCSCS
T ss_pred             cccCCeEEEEEEEeccCCCCCCcccccccCcceeeecCCCCcchhhhhhcccccCCCcccccccCCCCCCceeecCCCCC
Confidence            99999999999998632   443   47899999999 999998876554432     232    456899999999887


Q ss_pred             CCcc-C-C----------chhHHHHHHhhccccchhhhccccC
Q 026110          192 KDTI-D-G----------IQDEVAEIIKEDLWPNPLTYFNNVI  222 (243)
Q Consensus       192 ~~~~-e-~----------~~~ei~~~i~d~i~p~al~yy~~~~  222 (243)
                      +++. + +          .|++||++|+++|||+||.||+|+.
T Consensus       322 p~~dede~~~ee~e~~l~~DfeIG~~Ikd~IiP~AV~yftGea  364 (417)
T 2ayu_A          322 QNEDQDEELEEDLEERLALDYSIGEQLKDKLIPRAVDWFTGAA  364 (417)
T ss_dssp             CCCTTSSSTTHHHHHHHHHHHHHHHHHHHTTTTTHHHHHHSHH
T ss_pred             CCccccccchHHHHHHHHHHHHHHHHHHhhccccHHHHhcccc
Confidence            6543 1 1          3679999999999999999999964

>2zd7_A VPS75, vacuolar protein sorting-associated protein 75; histone chaperone, VPS75, NAP1, nucleus, phosphoprotein; 1.85A {Saccharomyces cerevisiae} PDB: 3q66_A* 3q68_A* 3c9d_A 3c9b_A 3q33_B* 3q35_B* 3dm7_A

Probab=100.00  E-value=4.7e-53  Score=374.94  Aligned_cols=196  Identities=24%  Similarity=0.400  Sum_probs=160.0

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHhhhhhhccccchHHHHHhcChhhhccCChhhHHhhcCcceeEEE
Q 026110           29 KLQEIQDELEKINEEASEKVLEVEQKYSEIRKPVYDKRNDIIKSIPDFWLTAFISHPALGELLSEEDQKIFRYLSSLEVE  108 (243)
Q Consensus        29 ~L~~lQ~el~~le~e~~~e~~~le~ky~k~~~Ply~kR~eiI~~IP~FW~~vl~n~~~l~~~i~~~D~~iL~~L~dI~Ve  108 (243)
                      +|..++.++..++.++.++.++++++|+++++|+|++|++||+|||+||++||+||+.++.+|+++|++||+||+||+|+
T Consensus        10 ~l~~~~~~l~~lq~e~~~~~~ele~ky~~~~~Ply~kR~eII~~IP~FWltal~n~~~l~~~I~e~De~iL~~L~dI~v~   89 (264)
T 2zd7_A           10 EHAKAFLGLAKCEEEVDAIEREVELYRLNKMKPVYEKRDAYIDEIAEFWKIVLSQHVSFANYIRASDFKYIDTIDKIKVE   89 (264)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCTTHHHHHHHHSTTGGGGSCGGGHHHHTTEEEEEEE
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHhcchhHHHHHHHcChHHHhhcCHhhHHHHHhcCceEEE
Confidence            34455555556666666666789999999999999999999999999999999999999999999999999999999999


Q ss_pred             Ec-----cCCCcceEEEEEecC-CCcccCCeEEEEEEeeCC-CC--C--cccccccccccCCCCC-CCccccccC---CC
Q 026110          109 DF-----KDVKSGYSITFNFSP-NPYFEDNKLTKTFTFLDD-DG--S--MKITATSIKWKEGMGI-PNGVNHEKK---GN  173 (243)
Q Consensus       109 ~~-----~d~~~~f~i~F~F~~-NpyF~N~~L~K~~~~~~~-~g--~--~~~~~t~I~Wk~gk~l-t~~~~~~k~---~~  173 (243)
                      ++     .+.++||+|+|+|++ ||||+|++|+|+|++... +|  .  .++++|+|+||+|++. |.....+|+   |+
T Consensus        90 ~~~~~~~~~~~~gf~i~F~F~~~NpyF~N~vLtK~y~~~~~~dg~~~~~~~s~~t~I~WK~g~~~~~~~~~~kk~~~~~~  169 (264)
T 2zd7_A           90 WLALESEMYDTRDFSITFHFHGIEGDFKEQQVTKVFQIKKGKDDQEDGILTSEPVPIEWPQSYDSINPDLIKDKRSPEGK  169 (264)
T ss_dssp             EGGGTCTTSCTTCEEEEEEECCBTTTBCCEEEEEEEEEECCSSSCCCCEEEECCCCCCCCGGGGGGCTTTCSCSSSHHHH
T ss_pred             EecccccCCCCCceEEEEEeCCCCCCccCCeEEEEEEecccCCCCCCCceeEeecccccCCCccccchhhhhhccccccc
Confidence            96     566899999999999 999999999999999862 23  2  6789999999997754 444332221   11


Q ss_pred             Cc-cccccccccccccccCCCccC-CchhHHHHHHhhccccchhhhccccCCC
Q 026110          174 KR-PLAEESFFTWFSDTQEKDTID-GIQDEVAEIIKEDLWPNPLTYFNNVIPL  224 (243)
Q Consensus       174 ~r-~~~~~SFF~~F~~~~~~~~~e-~~~~ei~~~i~d~i~p~al~yy~~~~~~  224 (243)
                      ++ .....|||+||+++..+++.+ ..+++||++|+++||||||+||+|+..+
T Consensus       170 ~~~r~~~~SFF~fF~~~~~~~~~~~~~d~eig~~Ikd~I~P~al~yf~g~~~d  222 (264)
T 2zd7_A          170 KKYRQGMKTIFGWFRWTGLKPGKEFPHGDSLASLFSEEIYPFCVKYYAEAQRD  222 (264)
T ss_dssp             HHHHHHHTSHHHHTTCCSSSTTSSSTTHHHHHHHHHHTHHHHHHHHHHHHHHT
T ss_pred             cccCCCCCCcceecCCCCCCccccccCchhHHHHHHhhhccCHHHHhcccccc
Confidence            11 124579999999987664432 3689999999999999999999986554

>2jo8_A Serine/threonine-protein kinase 4; C-terminal domain, human mammalian sterIle 20-like kinase 1, dimer, transferase; NMR {Homo sapiens}

Probab=94.32  E-value=0.099  Score=34.36  Aligned_cols=37  Identities=24%  Similarity=0.510  Sum_probs=31.6

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHhh
Q 026110           30 LQEIQDELEKINEEASEKVLEVEQKYSEIRKPVYDKR   66 (243)
Q Consensus        30 L~~lQ~el~~le~e~~~e~~~le~ky~k~~~Ply~kR   66 (243)
                      +..|+..+..++.++++|+-++.+.|..+++|+.+.-
T Consensus        12 ~eEL~~rl~~Ld~~Me~Ei~elr~RY~~KRqPIldAi   48 (51)
T 2jo8_A           12 VEDLQKRLLALDPMMEQEIEEIRQKYQSKRQPILDAI   48 (51)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHccHHHHHHHHHHHHHHHHhHhhHHHHH
Confidence            3456777888999999999999999999999998653

>2p2u_A HOST-nuclease inhibitor protein GAM, putative; structural genomics, unknown function, PSI-2, protein structure initiative; 2.75A {Desulfovibrio vulgaris} SCOP: h.4.18.1

Probab=92.93  E-value=0.21  Score=40.76  Aligned_cols=57  Identities=12%  Similarity=0.289  Sum_probs=51.9

Q ss_pred             CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHhhhhhhccccch
Q 026110           20 DSELVLSIEKLQEIQDELEKINEEASEKVLEVEQKYSEIRKPVYDKRNDIIKSIPDF   76 (243)
Q Consensus        20 ~~~v~~~~~~L~~lQ~el~~le~e~~~e~~~le~ky~k~~~Ply~kR~eiI~~IP~F   76 (243)
                      -+++-.++..+.+++.++..++.++..++.+++..|.+..+|+-.+...+-.+|-.|
T Consensus        15 ~~~~~~alr~ia~l~r~~~~i~~~~n~eI~~ik~~~~~~~~~l~~~i~~l~~~l~~y   71 (171)
T 2p2u_A           15 IRQAEGALAEIATIDRKVGEIEAQMNEAIDAAKARASQKSAPLLARRKELEDGVATF   71 (171)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            356888999999999999999999999999999999999999999988887777666

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	243
d2e50a1	222	d.305.1.1 (A:1-222) Protein SET {Human (Homo sapie	3e-62
d2ayua1	301	d.305.1.1 (A:70-370) Nucleosome assembly protein,	3e-41

>d2e50a1 d.305.1.1 (A:1-222) Protein SET {Human (Homo sapiens) [TaxId: 9606]} Length = 222

class: Alpha and beta proteins (a+b)
fold: NAP-like
superfamily: NAP-like
family: NAP-like
domain: Protein SET
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  192 bits (489), Expect = 3e-62
 Identities = 87/224 (38%), Positives = 140/224 (62%), Gaps = 12/224 (5%)

Query: 1   MVADKGKKTKVEEENAEQIDS---ELVLSIEKLQEIQDELEKINEEASEKVLEVEQKYSE 57
             A K  K ++   +    ++   E   +IE + E+Q+E++++NE+ASE++L+VEQKY++
Sbjct: 3   AQAAKVSKKELNSNHDGADETSEKEQQEAIEHIDEVQNEIDRLNEQASEEILKVEQKYNK 62

Query: 58  IRKPVYDKRNDIIKSIPDFWLTAFISHPALGELLSEEDQKIFRYLSSLEVEDFKDVKSGY 117
           +R+P + KR+++I  IP+FW+T F++HP +  LL EED++   YL+ +EV +F+D+KSGY
Sbjct: 63  LRQPFFQKRSELIAKIPNFWVTTFVNHPQVSALLGEEDEEAMHYLTRVEVTEFEDIKSGY 122

Query: 118 SITFNFSPNPYFEDNKLTKTFTFLDDDGSMKITATSIKWKEGMGIPNGVNHEKKGNKRPL 177
            I F F  NPYFE+  L+K F  +++ G     +T IKWK G  +    +  +    R  
Sbjct: 123 RIDFYFDENPYFENKVLSKEF-HMNESGDPSSKSTEIKWKSGKDMTKRSSQTQNKASRKR 181

Query: 178 AE---ESFFTWFSDTQEKDTIDGIQDEVAEIIKEDLWPNPLTYF 218
                ESFFTWF+D  +        DE+ E+IK+D+WPNPL Y+
Sbjct: 182 QHEEPESFFTWFTDHSDAGA-----DELGEVIKDDIWPNPLQYY 220

>d2ayua1 d.305.1.1 (A:70-370) Nucleosome assembly protein, NAP {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 301

class: Alpha and beta proteins (a+b)
fold: NAP-like
superfamily: NAP-like
family: NAP-like
domain: Nucleosome assembly protein, NAP
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score =  140 bits (355), Expect = 3e-41
 Identities = 51/267 (19%), Positives = 102/267 (38%), Gaps = 73/267 (27%)

Query: 27  IEKLQEIQDELEKINEEASEKVLEVEQKYSEIRKPVYDKRNDII---------------- 70
           +  L+ +Q EL ++ +E   ++ E+E K+ +  KP++++R+ II                
Sbjct: 27  LLSLKTLQSELFEVEKEFQVEMFELENKFLQKYKPIWEQRSRIISGQEQPKPEQIAKGQE 86

Query: 71  ---------------------------KSIPDFWLTAFISHPALGELLSEEDQKIFRYLS 103
                                      K IP FWLTA  + P + + +++ D ++  YL 
Sbjct: 87  IVESLNETELLVDEEEKAQNDSEEEQVKGIPSFWLTALENLPIVCDTITDRDAEVLEYLQ 146

Query: 104 SLEVEDFKDVKSGYSIT--FNFSPNPYFEDNKLTKTFTFLDDDGSM------KITATSIK 155
            + +E   D + G+ +   F+ S NP+F ++ L KT+ +  + G              I 
Sbjct: 147 DIGLEYLTDGRPGFKLLFRFDSSANPFFTNDILCKTYFYQKELGYSGDFIYDHAEGCEIS 206

Query: 156 WKEGMGI----------PNGVNHEKKGNKRPLAEESFFTWFSDTQEKDT----------- 194
           WK+               N    + +  ++    ESFF +F   + ++            
Sbjct: 207 WKDNAHNVTVDLEMRKQRNKTTKQVRTIEKITPIESFFNFFDPPKIQNEDQDEELEEDLE 266

Query: 195 -IDGIQDEVAEIIKEDLWPNPLTYFNN 220
               +   + E +K+ L P  + +F  
Sbjct: 267 ERLALDYSIGEQLKDKLIPRAVDWFTG 293

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	243
d2e50a1	222	Protein SET {Human (Homo sapiens) [TaxId: 9606]}	100.0
d2ayua1	301	Nucleosome assembly protein, NAP {Baker's yeast (S	100.0

>d2e50a1 d.305.1.1 (A:1-222) Protein SET {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: NAP-like
superfamily: NAP-like
family: NAP-like
domain: Protein SET
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=5.5e-62  Score=420.59  Aligned_cols=213  Identities=42%  Similarity=0.827  Sum_probs=171.4

Q ss_pred             CCCCccccchhhh-----hhccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHhhhhhhccccc
Q 026110            1 MVADKGKKTKVEE-----ENAEQIDSELVLSIEKLQEIQDELEKINEEASEKVLEVEQKYSEIRKPVYDKRNDIIKSIPD   75 (243)
Q Consensus         1 ~~~~~~~~~~~~~-----e~~~~~~~~v~~~~~~L~~lQ~el~~le~e~~~e~~~le~ky~k~~~Ply~kR~eiI~~IP~   75 (243)
                      ||||++|..+.+.     .++++++.++++++++|+.||.++++++.++.+++++|++||+++++|+|++|++||+|||+
T Consensus         1 m~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~L~~iQ~e~~~l~~e~~~e~~~le~k~~~~~~ply~~R~~iI~gIP~   80 (222)
T d2e50a1           1 MSAQAAKVSKKELNSNHDGADETSEKEQQEAIEHIDEVQNEIDRLNEQASEEILKVEQKYNKLRQPFFQKRSELIAKIPN   80 (222)
T ss_dssp             CHHHHHHHHHHHTTC-----CTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSTT
T ss_pred             CCCccccccchhcccccCCccccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHhccCcc
Confidence            8888777666633     56678999999999999999999999999999999999999999999999999999999999


Q ss_pred             hHHHHHhcChhhhccCChhhHHhhcCcceeEEEEccCCCcceEEEEEecCCCcccCCeEEEEEEeeCCCCCccccccccc
Q 026110           76 FWLTAFISHPALGELLSEEDQKIFRYLSSLEVEDFKDVKSGYSITFNFSPNPYFEDNKLTKTFTFLDDDGSMKITATSIK  155 (243)
Q Consensus        76 FW~~vl~n~~~l~~~i~~~D~~iL~~L~dI~Ve~~~d~~~~f~i~F~F~~NpyF~N~~L~K~~~~~~~~g~~~~~~t~I~  155 (243)
                      ||++||+||+.++.+|+++|+++|+||+||+|++.+++..||+|+|+|++||||+|++|+|+|+++. +|.++++||+|+
T Consensus        81 FW~~~l~n~~~l~~~I~~~D~~~L~~L~dI~v~~~~~~~~~f~i~F~F~~N~yF~N~~L~K~y~~~~-~~~~~~~~t~I~  159 (222)
T d2e50a1          81 FWVTTFVNHPQVSALLGEEDEEAMHYLTRVEVTEFEDIKSGYRIDFYFDENPYFENKVLSKEFHMNE-SGDPSSKSTEIK  159 (222)
T ss_dssp             HHHHHHHTSHHHHTTCCHHHHHHGGGEEEEEEEECCSSCCCEEEEEEECSCSSBSCSEEEEEEC--------CEEECCCC
T ss_pred             HHHHHHHcCcchhhhCCHHHHHHHHhhhheeeeeccCCCCceEEEEEeCCCCcccCCeEEEEEEecC-CCCcccccccce
Confidence            9999999999999999999999999999999999988889999999999999999999999999988 888889999999


Q ss_pred             ccCCCCCCCccccccCCC---CccccccccccccccccCCCccCCchhHHHHHHhhccccchhhhcc
Q 026110          156 WKEGMGIPNGVNHEKKGN---KRPLAEESFFTWFSDTQEKDTIDGIQDEVAEIIKEDLWPNPLTYFN  219 (243)
Q Consensus       156 Wk~gk~lt~~~~~~k~~~---~r~~~~~SFF~~F~~~~~~~~~e~~~~ei~~~i~d~i~p~al~yy~  219 (243)
                      ||+|+++|++...++++.   .......|||+||+++..+     ++++||++|+++|||+||.||+
T Consensus       160 Wk~gkd~t~k~~~~~~~~~~~~~~~~~~SFFnfF~~~~~~-----~~deI~~~i~d~i~p~av~yyL  221 (222)
T d2e50a1         160 WKSGKDMTKRSSQTQNKASRKRQHEEPESFFTWFTDHSDA-----GADELGEVIKDDIWPNPLQYYL  221 (222)
T ss_dssp             BCSSCCC----------------------CGGGGC-----------CHHHHHHHHHTTTTCSHHHHC
T ss_pred             ecCCCccccccccccccCccccccCCCCChhhcCCCCCCC-----CchHHHHHHHhhhchhhhHhhc
Confidence            999999998765443322   2234668999999988765     4678999999999999999997

>d2ayua1 d.305.1.1 (A:70-370) Nucleosome assembly protein, NAP {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a+b)
fold: NAP-like
superfamily: NAP-like
family: NAP-like
domain: Nucleosome assembly protein, NAP
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=100.00  E-value=6.1e-57  Score=404.48  Aligned_cols=212  Identities=25%  Similarity=0.546  Sum_probs=184.5

Q ss_pred             hhhhccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHhhhhhh---------------------
Q 026110           12 EEENAEQIDSELVLSIEKLQEIQDELEKINEEASEKVLEVEQKYSEIRKPVYDKRNDII---------------------   70 (243)
Q Consensus        12 ~~e~~~~~~~~v~~~~~~L~~lQ~el~~le~e~~~e~~~le~ky~k~~~Ply~kR~eiI---------------------   70 (243)
                      +.+++++||+.|+++|.+|+.||.++++++.++.+++++||++|.++++|+|++|++||                     
T Consensus        12 ~~~~i~~Lp~~v~~rv~aLk~lq~e~~~le~~f~~e~~~LE~ky~~~~~ply~kR~~II~G~~ept~eE~~~~~~~~e~~   91 (301)
T d2ayua1          12 DSGYVGGLPKNVKEKLLSLKTLQSELFEVEKEFQVEMFELENKFLQKYKPIWEQRSRIISGQEQPKPEQIAKGQEIVESL   91 (301)
T ss_dssp             HHHHHHHSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSSCCCHHHHHHHHHHHHHT
T ss_pred             CcchHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhChHHHHHHHHHCCCCCCCHHHhhccccccccc
Confidence            55899999999999999999999999999999999999999999999999999999999                     


Q ss_pred             ----------------------ccccchHHHHHhcChhhhccCChhhHHhhcCcceeEEEEccCCCcceEEEEEe--cCC
Q 026110           71 ----------------------KSIPDFWLTAFISHPALGELLSEEDQKIFRYLSSLEVEDFKDVKSGYSITFNF--SPN  126 (243)
Q Consensus        71 ----------------------~~IP~FW~~vl~n~~~l~~~i~~~D~~iL~~L~dI~Ve~~~d~~~~f~i~F~F--~~N  126 (243)
                                            +|||+||++||+||+.++.+|+++|+++|+||+||+|++.+++..||+|+|+|  ++|
T Consensus        92 ~~~e~~~~~~~~~~~~~~~~~~kgIP~FWl~vl~n~~~l~~~I~e~D~~~L~~L~dI~ve~~~d~~~gf~l~F~F~f~~N  171 (301)
T d2ayua1          92 NETELLVDEEEKAQNDSEEEQVKGIPSFWLTALENLPIVCDTITDRDAEVLEYLQDIGLEYLTDGRPGFKLLFRFDSSAN  171 (301)
T ss_dssp             TCGGGCCSSCC---------CCSSCTTHHHHHHHTSTTGGGTCCHHHHTGGGGEEEEECCBCCSSSCEEEEEEEECTTTC
T ss_pred             chhhhhhhhhhhhccccccccccCCchHHHHHHHcCHHHhhhCCHHHHHHHHhhceeEEEEccCCCCCceEEEEEecCCC
Confidence                                  48999999999999999999999999999999999999988878899999999  689


Q ss_pred             CcccCCeEEEEEEeeCC---CCC---cccccccccccC-CCCCCCccccccCCC-----Cc----ccccccccccccccc
Q 026110          127 PYFEDNKLTKTFTFLDD---DGS---MKITATSIKWKE-GMGIPNGVNHEKKGN-----KR----PLAEESFFTWFSDTQ  190 (243)
Q Consensus       127 pyF~N~~L~K~~~~~~~---~g~---~~~~~t~I~Wk~-gk~lt~~~~~~k~~~-----~r----~~~~~SFF~~F~~~~  190 (243)
                      |||+|++|+|+|++...   +++   ..++||+|+||+ |+++|.+...+|+++     .|    +.+..|||+||+++.
T Consensus       172 ~yF~N~vLtK~y~~~~~~~~~~~~~~~~~eg~~I~WK~~~k~~t~~~~~kk~~~k~~~~~r~~~k~~~~~SFF~fF~~~~  251 (301)
T d2ayua1         172 PFFTNDILCKTYFYQKELGYSGDFIYDHAEGCEISWKDNAHNVTVDLEMRKQRNKTTKQVRTIEKITPIESFFNFFDPPK  251 (301)
T ss_dssp             SSBCCSEEEEEEEEESSCCSSSSCEEEEEEECCCCBSCTTTCTTEEEEECCC---------CCEEEEECCCGGGGGSCSC
T ss_pred             CCCCCCeEEEEEEEecCCCCCCCccccccCccccccccCCCcchhhhhhhcccCCCCCCCcccccCCCCCCCCcCCCCCC
Confidence            99999999999999762   222   247999999999 578887765544332     22    245679999999887


Q ss_pred             CCCccC------------CchhHHHHHHhhccccchhhhccccCC
Q 026110          191 EKDTID------------GIQDEVAEIIKEDLWPNPLTYFNNVIP  223 (243)
Q Consensus       191 ~~~~~e------------~~~~ei~~~i~d~i~p~al~yy~~~~~  223 (243)
                      .+++.+            +.|++||++|+++|||+||.||||++.
T Consensus       252 ~~~~~~~~~~~e~~~~~l~~D~eig~~i~d~iiP~Av~yytGea~  296 (301)
T d2ayua1         252 IQNEDQDEELEEDLEERLALDYSIGEQLKDKLIPRAVDWFTGAAL  296 (301)
T ss_dssp             SCCCTTSSSTTHHHHHHHHHHHHHHHHHHHTTTTTHHHHHHSHHH
T ss_pred             CCCccccchhhHHHHHHHhhhHHHHHHHHhcccccHHHhhCchhh
Confidence            764321            147789999999999999999999764