Citrus Sinensis ID: 026114

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240---
Protein Sequence
MLYALSAPKTCISCPRGPPFPQKRQVSTRLCVHASLPADNGGFKVEYTPWLIVGLGNPGIKYHGTRHNVGFEMIDHIAQAQRIAMNTIQSKALIGIGSIGEVPILLAKPQAYMNFSGESVGPLAAHYQVPLRHILIYDEMSLMNGVLRLQPKGGHGHHNGLKSVMNHLDGCREFPRLCIGIGNPPGKMDMKAYLLQKFSPIEREQIDAALEQGVEAVRTLVLNGFDQNISRFNMGQKYKYHAV
Secondary Structure (PSIPRED)
ccccccccccccccccccccccccccccEEEEEccccccccccccccccEEEEEccccccccccccccHHHHHHHHHHHHcccccccccccEEEEEEEEccEEEEEEccccccccccHHHHHHHHHcccccccEEEEcccccccccEEEcccccccccccHHHHHHHccccccccEEEEccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHcHHHHHHHHHcccccccccc
Secondary Structure Prediction (SSPRO)
cccccccccccccccccccccccccccEEEEEEEEcccccccccccccEEEEEEcccccccccccHHHHHHHHHHHHHHHHccccccccEEEEEEEEEEcccEEEEEEcccHccccHHHHHHHHHHccccHHHEEEEEEcccccccEEEEEcccccccHHHHHHHHHcccccccEEEEEEccccccHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHHHHHcHHHHHHHHHccccccEccc
Coil and Loop (DISEMBL)
mlyalsapktciscprgppfpqkrqvstrlcvhaslpadnggfkveytpwlivglgnpgikyhgtrhnvGFEMIDHIAQAQRIAMNTIQSKALigigsigevpillakpqaymnfsgesvgplaahyqvplRHILIYDEMslmngvlrlqpkgghghhnglKSVMNHLdgcrefprlcigignppgkmDMKAYLLQKFSPIEREQIDAALEQGVEAVRTLVLNGfdqnisrfnmgqkykyhav
Flexible Loop (DISEMBL)
mlyalsapktciscprgppFPQKRQVSTRLCVHASLPADNGGFKVEYTPWLIVGLGNPGIKYHGTRHNVGFEMIDHIAQAQRIAMNTIQSKALIGIGSIGEVPILLAKPQAYMNFSGESVGPLAAHYQVPLRHILIYDEMSLMNGVLRLQPKGGHGHHNGLKSVMNHLDGCREFPRLCIGIGNPPGKMDMKAYLLQKFSPIEREQIDAALEQGVEAVRTLVLNgfdqnisrfnmgqkykyhav
Low Complexity Region (SEG)
MLYALSAPKTCISCPRGPPFPQKRQVSTRLCVHASLPADNGGFKVEYTPWLIVGLGNPGIKYHGTRHNVGFEMIDHIAQAQRIAMNTIQSKALIGIGSIGEVPILLAKPQAYMNFSGESVGPLAAHYQVPLRHILIYDEMSLMNGVLRLQPKGGHGHHNGLKSVMNHLDGCREFPRLCIGIGNPPGKMDMKAYLLQKFSPIEREQIDAALEQGVEAVRTLVLNGFDQNISRFNMGQKYKYHAV
Disordered region (IsUnstruct)
*************************VSTRLCVHASLPADNGGFKVEYTPWLIVGLGNPGIKYHGTRHNVGFEMIDHIAQAQRIAMNTIQSKALIGIGSIGEVPILLAKPQAYMNFSGESVGPLAAHYQVPLRHILIYDEMSLMNGVLRLQPKGGHGHHNGLKSVMNHLDGCREFPRLCIGIGNPPGKMDMKAYLLQKFSPIEREQIDAALEQGVEAVRTLVLNGFDQNISRFNMGQ*******
Disordered Region (DISOPRED)
*******PKT***************************************WLIVGLGNPGIKYHGTRHNVGFEMIDHIAQAQRIAMNTIQSKALIGIGSIGEVPILLAKPQAYMNFSGESVGPLAAHYQVPLRHILIYDEMSLMNGVLRLQPKGGHGHHNGLKSVMNHLDGCREFPRLCIGIGNPPGKMDMKAYLLQKFSPIEREQIDAALEQGVEAVRTLVLNGFDQNISRFN**********
Disordered Region (DISEMBL)
MLYALSAPKTCISCPRGPPFPQKRQVSTRLCVHASLPADNGGFKVEYTPWLIVGLGNPGIKYHGTRHNVGFEMIDHIAQAQRIAMNTIQSKALIGIGSIGEVPILLAKPQAYMNFSGESVGPLAAHYQVPLRHILIYDEMSLMNGVLRLQPKGGHGHHNGLKSVMNHLDGCREFPRLCIGIGNPPGKMDMKAYLLQKFSPIEREQIDAALEQGVEAVRTLVLNGFDQNISRFNMGQKYKYHAV
Disordered Region (DISPRO)
******APKTCISCPRGPPFPQKRQVSTRLCVHASLPADNGGFKVEYTPWLIVGLGNPGIKYHGTRHNVGFEMIDHIAQAQRIAMNTIQSKALIGIGSIGEVPILLAKPQAYMNFSGESVGPLAAHYQVPLRHILIYDEMSLMNGVLRLQPKGGHGHHNGLKSVMNHLDGCREFPRLCIGIGNPPGKMDMKAYLLQKFSPIEREQIDAALEQGVEAVRTLVLNGFDQNISRFNMGQKY*****
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MLYALSAPKTCISCPRGPPFPQKRQVSTRLCVHASLPADNGGFKVEYTPWLIVGLGNPGIKYHGTRHNVGFEMIDHIAQAQRIAMNTIQSKALIGIGSIGEVPILLAKPQAYMNFSGESVGPLAAHYQVPLRHILIYDEMSLMNGVLRLQPKGGHGHHNGLKSVMNHLDGCREFPRLCIGIGNPPGKMDMKAYLLQKFSPIEREQIDAALEQGVEAVRTLVLNGFDQNISRFNMGQKYKYHAV
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	243	2.2.26 [Sep-21-2011]
Q9FKN4	246	Chloroplastic group IIB i	yes	no	1.0	0.987	0.703	4e-97
Q9LF14	240	Chloroplastic group IIB i	no	no	0.913	0.925	0.741	4e-91
Q5ZCL8	259	Chloroplastic group IIB i	yes	no	0.876	0.822	0.716	1e-86
Q9M5P4	256	Chloroplastic group IIB i	N/A	no	0.934	0.886	0.668	1e-85
Q6NLS8	219	Peptidyl-tRNA hydrolase,	no	no	0.798	0.885	0.584	2e-61
Q8GW64	288	Peptidyl-tRNA hydrolase,	no	no	0.761	0.642	0.559	1e-59
Q5N9Q7	250	Peptidyl-tRNA hydrolase,	no	no	0.773	0.752	0.544	6e-57
Q181A2	186	Peptidyl-tRNA hydrolase O	yes	no	0.753	0.983	0.4	3e-39
Q47SW2	213	Peptidyl-tRNA hydrolase O	yes	no	0.777	0.887	0.401	2e-36
B8G3X3	188	Peptidyl-tRNA hydrolase O	yes	no	0.753	0.973	0.419	4e-36

>sp|Q9FKN4|CRS2A_ARATH Chloroplastic group IIB intron splicing facilitator CRS2-A, chloroplastic OS=Arabidopsis thaliana GN=CRS2A PE=2 SV=1

 Score =  354 bits (908), Expect = 4e-97,   Method: Compositional matrix adjust.
 Identities = 173/246 (70%), Positives = 199/246 (80%), Gaps = 3/246 (1%)

Query: 1   MLYALSAPKTCISCPRGPPFPQKRQVSTRLC-VHASLP-ADNGGFKVEYTPWLIVGLGNP 58
           M  A S+P T    P+   F Q +  S R   + ASLP +DN   K EYTPWLIVGLGNP
Sbjct: 1   MFCASSSPITSPLYPKAYKFSQTKSNSKRFSSLRASLPVSDNKLLKFEYTPWLIVGLGNP 60

Query: 59  GIKYHGTRHNVGFEMIDHIAQAQRIAMNTIQSKALIGIGSIGEVPILLAKPQAYMNFSGE 118
           G+KY+GTRHN+GFEMIDHIA+A  I+MNTIQSKAL+GIGS+GEVPILL KPQ YMNFSGE
Sbjct: 61  GLKYYGTRHNIGFEMIDHIARATDISMNTIQSKALVGIGSVGEVPILLVKPQGYMNFSGE 120

Query: 119 SVGPLAAHYQVPLRHIL-IYDEMSLMNGVLRLQPKGGHGHHNGLKSVMNHLDGCREFPRL 177
           SVGPLAA+YQ+PLRHIL IYD+M L NGVLRLQPKGGH  HNGLK+V  HL+GCR +PRL
Sbjct: 121 SVGPLAAYYQIPLRHILMIYDDMGLSNGVLRLQPKGGHSQHNGLKNVTEHLNGCRGYPRL 180

Query: 178 CIGIGNPPGKMDMKAYLLQKFSPIEREQIDAALEQGVEAVRTLVLNGFDQNISRFNMGQK 237
            IGIGNPPG MDMKA+LLQKFSP+ER+Q+D  LEQGVE V+TLV  GF  +ISRFN+GQK
Sbjct: 181 SIGIGNPPGNMDMKAFLLQKFSPLERKQMDEGLEQGVEGVKTLVEEGFSDSISRFNLGQK 240

Query: 238 YKYHAV 243
           YK+H V
Sbjct: 241 YKFHKV 246

Required for the splicing of group IIB introns in chloroplasts.
Arabidopsis thaliana (taxid: 3702)

>sp|Q9LF14|CRS2B_ARATH Chloroplastic group IIB intron splicing facilitator CRS2-B, chloroplastic OS=Arabidopsis thaliana GN=CRS2B PE=2 SV=1

 Score =  334 bits (856), Expect = 4e-91,   Method: Compositional matrix adjust.
 Identities = 166/224 (74%), Positives = 189/224 (84%), Gaps = 2/224 (0%)

Query: 21  PQKRQVSTRLCVHASLPADNGGFKVEYTPWLIVGLGNPGIKYHGTRHNVGFEMIDHIAQA 80
           P  R+   R+C   S   D+  FKVEYTPWLIVGLGNPG KYHGTRHNVGFEMID +A+ 
Sbjct: 18  PVFRKQRFRVCSSTSGGEDDR-FKVEYTPWLIVGLGNPGNKYHGTRHNVGFEMIDVLARK 76

Query: 81  QRIAMNTIQSKALIGIGSIGEVPILLAKPQAYMNFSGESVGPLAAHYQVPLRHIL-IYDE 139
           + + MNTIQSKALIGIG+I +VPILLAKPQ YMNFSGESVG LA+HY+VPLRHIL IYDE
Sbjct: 77  EGVLMNTIQSKALIGIGAIEDVPILLAKPQTYMNFSGESVGSLASHYRVPLRHILMIYDE 136

Query: 140 MSLMNGVLRLQPKGGHGHHNGLKSVMNHLDGCREFPRLCIGIGNPPGKMDMKAYLLQKFS 199
           M+L NGVLRLQPKGG G+HNG+KSVM HLDG R FPRL IGIG PPG MDMKA+LLQKFS
Sbjct: 137 MALPNGVLRLQPKGGQGYHNGVKSVMGHLDGRRNFPRLSIGIGKPPGNMDMKAFLLQKFS 196

Query: 200 PIEREQIDAALEQGVEAVRTLVLNGFDQNISRFNMGQKYKYHAV 243
           P+E++QI+ ALEQG EAV+TLVLNGF+Q ISRFN+ QKYK+H V
Sbjct: 197 PLEQKQIEEALEQGSEAVKTLVLNGFNQGISRFNLVQKYKFHKV 240

Required for the splicing of group IIB introns in chloroplasts.

Arabidopsis thaliana (taxid: 3702)

>sp|Q5ZCL8|CRS2_ORYSJ Chloroplastic group IIB intron splicing facilitator CRS2, chloroplastic OS=Oryza sativa subsp. japonica GN=Os01g0132800 PE=2 SV=1

 Score =  319 bits (817), Expect = 1e-86,   Method: Compositional matrix adjust.
 Identities = 154/215 (71%), Positives = 179/215 (83%), Gaps = 2/215 (0%)

Query: 30  LCVHASLPADNGGFKVEYTPWLIVGLGNPGIKYHGTRHNVGFEMIDHIAQAQRIAMNTIQ 89
           + V AS+P D      EYTPWLI GLGNPG KYHGTRHNVGFEM+D IA+ + I MNTIQ
Sbjct: 46  IAVVASVP-DPAARPAEYTPWLIAGLGNPGSKYHGTRHNVGFEMVDRIARDEGITMNTIQ 104

Query: 90  SKALIGIGSIGEVPILLAKPQAYMNFSGESVGPLAAHYQVPLRHILI-YDEMSLMNGVLR 148
           SK+L+GIGSIGEVP+LL KPQ+Y+N+SGE++GPLAA+YQVPLRHIL+ YDEMSL NGVLR
Sbjct: 105 SKSLLGIGSIGEVPVLLVKPQSYINYSGEAIGPLAAYYQVPLRHILVMYDEMSLPNGVLR 164

Query: 149 LQPKGGHGHHNGLKSVMNHLDGCREFPRLCIGIGNPPGKMDMKAYLLQKFSPIEREQIDA 208
           LQ KGGHG HNGL++VM  LD  RE PRL IGIG+PPGKMD +A+LLQKFS  ER QID 
Sbjct: 165 LQRKGGHGRHNGLQNVMECLDSSRELPRLSIGIGSPPGKMDTRAFLLQKFSSEERLQIDT 224

Query: 209 ALEQGVEAVRTLVLNGFDQNISRFNMGQKYKYHAV 243
           ALEQGV+AVRTLVL GF  +I RFN+ QKYK+H+V
Sbjct: 225 ALEQGVDAVRTLVLKGFSGSIERFNLVQKYKFHSV 259

Required for the splicing of group IIB introns in chloroplasts.

Oryza sativa subsp. japonica (taxid: 39947)

>sp|Q9M5P4|CRS2_MAIZE Chloroplastic group IIB intron splicing facilitator CRS2, chloroplastic OS=Zea mays GN=CRS2 PE=1 SV=1

 Score =  315 bits (808), Expect = 1e-85,   Method: Compositional matrix adjust.
 Identities = 161/241 (66%), Positives = 188/241 (78%), Gaps = 14/241 (5%)

Query: 4   ALSAPKTCISCPRGPPFPQKRQVSTRLCVHASLPADNGGFKVEYTPWLIVGLGNPGIKYH 63
           +L+AP   I  PR  PF           V +S+P D     VEYTPWLI GLGNPG KY+
Sbjct: 29  SLTAPLHRIRRPR--PF----------TVVSSVP-DPAAGPVEYTPWLIAGLGNPGNKYY 75

Query: 64  GTRHNVGFEMIDHIAQAQRIAMNTIQSKALIGIGSIGEVPILLAKPQAYMNFSGESVGPL 123
           GTRHNVGFEM+D IA  + I MNTIQSK+L+GIGSIGEVP+L+ KPQ+YMN+SGE++GPL
Sbjct: 76  GTRHNVGFEMVDRIAAEEGITMNTIQSKSLLGIGSIGEVPVLVVKPQSYMNYSGEAIGPL 135

Query: 124 AAHYQVPLRHIL-IYDEMSLMNGVLRLQPKGGHGHHNGLKSVMNHLDGCREFPRLCIGIG 182
           AA+YQVPLRHIL IYD+ SL NGVLRLQ KGGHG HNGL++V+ HLDG REFPRL IGIG
Sbjct: 136 AAYYQVPLRHILLIYDDTSLPNGVLRLQKKGGHGRHNGLQNVIEHLDGRREFPRLSIGIG 195

Query: 183 NPPGKMDMKAYLLQKFSPIEREQIDAALEQGVEAVRTLVLNGFDQNISRFNMGQKYKYHA 242
           +PPGKMD +A+LLQKFS  ER QID ALEQGV+AVRTLVL GF  +  RFN+ QKYK+H 
Sbjct: 196 SPPGKMDPRAFLLQKFSSEERVQIDTALEQGVDAVRTLVLKGFSGSTERFNLVQKYKFHR 255

Query: 243 V 243
           V
Sbjct: 256 V 256

Required for the splicing of group IIB introns in chloroplasts. Forms complexes with either CAF1 or CAF2 which, in turn, interact with RNA and confer intron specificity of the splicing particles. Has no peptidyl-tRNA hydrolase activity.

Zea mays (taxid: 4577)

>sp|Q6NLS8|PTHM_ARATH Peptidyl-tRNA hydrolase, mitochondrial OS=Arabidopsis thaliana GN=At5g19830 PE=2 SV=1

 Score =  235 bits (600), Expect = 2e-61,   Method: Compositional matrix adjust.
 Identities = 114/195 (58%), Positives = 148/195 (75%), Gaps = 1/195 (0%)

Query: 47  YTPWLIVGLGNPGIKYHGTRHNVGFEMIDHIAQAQRIAMNTIQSKALIGIGSIGEVPILL 106
           + PWL +GLGNPG KY GTRHN+GFEMID  A++  I MN +  KA++G G + ++P++L
Sbjct: 16  HRPWLFLGLGNPGDKYKGTRHNIGFEMIDVFAESVGIQMNLVNFKAIMGQGFVADLPVIL 75

Query: 107 AKPQAYMNFSGESVGPLAAHYQVPLRHILI-YDEMSLMNGVLRLQPKGGHGHHNGLKSVM 165
           AKPQ YMN SGES GPLAA+Y++PL  +L+ +D+M L  GVLRLQ KGGHG HNGLKSVM
Sbjct: 76  AKPQTYMNLSGESSGPLAAYYKLPLNRVLVVHDDMQLPCGVLRLQEKGGHGCHNGLKSVM 135

Query: 166 NHLDGCREFPRLCIGIGNPPGKMDMKAYLLQKFSPIEREQIDAALEQGVEAVRTLVLNGF 225
           NH  G REF RL IGIG PPG+MD KA+LLQKFS   RE++D AL +GV+A++ ++   F
Sbjct: 136 NHFRGNREFARLRIGIGKPPGQMDPKAFLLQKFSMPARERMDKALAEGVDALKLVLAKDF 195

Query: 226 DQNISRFNMGQKYKY 240
            ++   FN+ QKYK+
Sbjct: 196 GESWRLFNVEQKYKH 210

The natural substrate for this enzyme may be peptidyl-tRNAs which drop off the ribosome during protein synthesis. May also be required for the splicing of group IIB introns in mitochondrions.

Arabidopsis thaliana (taxid: 3702)

EC: 3

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: 2

EC: 9

>sp|Q8GW64|PTHC_ARATH Peptidyl-tRNA hydrolase, chloroplastic OS=Arabidopsis thaliana GN=At1g18440 PE=2 SV=2

 Score =  229 bits (584), Expect = 1e-59,   Method: Compositional matrix adjust.
 Identities = 104/186 (55%), Positives = 143/186 (76%), Gaps = 1/186 (0%)

Query: 49  PWLIVGLGNPGIKYHGTRHNVGFEMIDHIAQAQRIAMNTIQSKALIGIGSIGEVPILLAK 108
           PWLIVGLGNPG KY GTRHNVGFEM+D +A A+ I+MNT+  KAL G G IG +PI+LAK
Sbjct: 94  PWLIVGLGNPGKKYQGTRHNVGFEMVDALADAEGISMNTVNFKALFGKGVIGNIPIMLAK 153

Query: 109 PQAYMNFSGESVGPLAAHYQVPLRHIL-IYDEMSLMNGVLRLQPKGGHGHHNGLKSVMNH 167
           PQ +MN SGESVG + + Y++PL+ +L +YD++ L  G LRL PKGGHG HNG++S+++ 
Sbjct: 154 PQTFMNLSGESVGQIVSFYKIPLKQVLVVYDDLDLPFGKLRLLPKGGHGGHNGMRSIIDR 213

Query: 168 LDGCREFPRLCIGIGNPPGKMDMKAYLLQKFSPIEREQIDAALEQGVEAVRTLVLNGFDQ 227
           L G R+FPRL IGIG PPGKMD   ++L++F+  E+E++D   + G+EA+R L+L GF++
Sbjct: 214 LKGSRDFPRLRIGIGRPPGKMDTANFVLRQFNRQEQEELDHTFQTGLEAIRILLLEGFNK 273

Query: 228 NISRFN 233
           + +  N
Sbjct: 274 SATFVN 279

The natural substrate for this enzyme may be peptidyl-tRNAs which drop off the ribosome during protein synthesis.

Arabidopsis thaliana (taxid: 3702)

EC: 3

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: 2

EC: 9

>sp|Q5N9Q7|PTHM_ORYSJ Peptidyl-tRNA hydrolase, mitochondrial OS=Oryza sativa subsp. japonica GN=Os01g0693900 PE=2 SV=1

 Score =  220 bits (561), Expect = 6e-57,   Method: Compositional matrix adjust.
 Identities = 103/189 (54%), Positives = 143/189 (75%), Gaps = 1/189 (0%)

Query: 49  PWLIVGLGNPGIKYHGTRHNVGFEMIDHIAQAQRIAMNTIQSKALIGIGSIGEVPILLAK 108
           PWL VGLGNPG  Y GTRHNVGFEMID IA+A+ I+++++Q KA++G G IG+ PI+LAK
Sbjct: 55  PWLFVGLGNPGKVYQGTRHNVGFEMIDVIAEAEGISLSSMQFKAMVGKGRIGDAPIMLAK 114

Query: 109 PQAYMNFSGESVGPLAAHYQVPLRHILI-YDEMSLMNGVLRLQPKGGHGHHNGLKSVMNH 167
           PQ +MN SGESVG L +++++PL  +L+ YD++ L    LRL PKGGHG HNG++S++NH
Sbjct: 115 PQTFMNASGESVGQLVSYFKIPLNQVLVMYDDLDLPFAKLRLLPKGGHGGHNGVRSIINH 174

Query: 168 LDGCREFPRLCIGIGNPPGKMDMKAYLLQKFSPIEREQIDAALEQGVEAVRTLVLNGFDQ 227
           L   R+FPRL IGIG PPGKMD   ++L+ F+  E+E++D A  +G+EAVR + L GF++
Sbjct: 175 LKQNRDFPRLRIGIGRPPGKMDPANFVLRPFNRKEQEELDFAFHRGLEAVRIMALEGFNK 234

Query: 228 NISRFNMGQ 236
           + +  N  Q
Sbjct: 235 SATYVNTAQ 243

The natural substrate for this enzyme may be peptidyl-tRNAs which drop off the ribosome during protein synthesis.

Oryza sativa subsp. japonica (taxid: 39947)

EC: 3

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: 2

EC: 9

>sp|Q181A2|PTH_CLOD6 Peptidyl-tRNA hydrolase OS=Clostridium difficile (strain 630) GN=pth PE=3 SV=1

 Score =  161 bits (408), Expect = 3e-39,   Method: Compositional matrix adjust.
 Identities = 74/185 (40%), Positives = 122/185 (65%), Gaps = 2/185 (1%)

Query: 50  WLIVGLGNPGIKYHGTRHNVGFEMIDHIAQAQRIAMNTIQSKALIGIGSIGEVPILLAKP 109
           +++VGLGNPG KY  TRHNVGF++ID +A+   I++  I+ KALIG G +G   +LL KP
Sbjct: 2   YVVVGLGNPGKKYEKTRHNVGFDVIDILAKEYNISVTKIKHKALIGEGRVGTEKVLLVKP 61

Query: 110 QAYMNFSGESVGPLAAHYQVPLRHI-LIYDEMSLMNGVLRLQPKGGHGHHNGLKSVMNHL 168
           Q YMN SGE++  +  +Y+V L +I ++YD++ L  G +R++ KG  G HNG+KS+   L
Sbjct: 62  QTYMNLSGETLIDIYKYYKVDLSNIVVVYDDIDLEVGKIRIRKKGSGGTHNGMKSITKCL 121

Query: 169 DGCREFPRLCIGIGNPPGKMDMKAYLLQKFSPIEREQIDAALEQGVEAVRTLVLNGFDQN 228
            G  +FPR+ +G+  P    D+  ++L +F   E + I+ ALE+  +A+ +++    D +
Sbjct: 122 -GSNDFPRVRVGVSKPEAGQDLADFVLSRFRKEESDNINEALEKAADAIDSIIRENIDMS 180

Query: 229 ISRFN 233
           ++++N
Sbjct: 181 MNKYN 185

The natural substrate for this enzyme may be peptidyl-tRNAs which drop off the ribosome during protein synthesis.

Clostridium difficile (strain 630) (taxid: 272563)

EC: 3

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: 2

EC: 9

>sp|Q47SW2|PTH_THEFY Peptidyl-tRNA hydrolase OS=Thermobifida fusca (strain YX) GN=pth PE=3 SV=1

 Score =  152 bits (384), Expect = 2e-36,   Method: Compositional matrix adjust.
 Identities = 77/192 (40%), Positives = 122/192 (63%), Gaps = 3/192 (1%)

Query: 37  PADNGGFKVEYTPWLIVGLGNPGIKYHGTRHNVGFEMIDHIAQAQRIAMNTIQSKALIGI 96
           P ++G   V    WL+VGLGNPG KY G RHNVGF ++D +A  +       ++ A +  
Sbjct: 23  PGESGAV-VSGERWLVVGLGNPGPKYAGNRHNVGFMVVDELAAQRGERWRLHKAHAQVVE 81

Query: 97  GSIGEVPILLAKPQAYMNFSGESVGPLAAHYQVPL-RHILIYDEMSLMNGVLRLQPKGGH 155
             +G+ P++LAKP +YMN SG  V  L+A Y+VP+ R I+++DE+ +    L+L+  GG 
Sbjct: 82  TRVGDAPVVLAKPASYMNLSGGPVAKLSAFYKVPVDRIIVVHDELDIPFARLKLKRGGGS 141

Query: 156 GHHNGLKSVMNHLDGCREFPRLCIGIGNPPGKMDMKAYLLQKFSPIEREQIDAALEQGVE 215
             HNGL+S+   L G  ++ R+ +GIG PPG+MD  +++LQ FS  ER+++D  + +  +
Sbjct: 142 AGHNGLRSITASL-GSPDYVRVRVGIGRPPGRMDAASFVLQDFSTAERKELDVHVARAAD 200

Query: 216 AVRTLVLNGFDQ 227
           AV T+V +G ++
Sbjct: 201 AVETVVTSGLEK 212

The natural substrate for this enzyme may be peptidyl-tRNAs which drop off the ribosome during protein synthesis.

Thermobifida fusca (strain YX) (taxid: 269800)

EC: 3

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: 2

EC: 9

>sp|B8G3X3|PTH_CHLAD Peptidyl-tRNA hydrolase OS=Chloroflexus aggregans (strain MD-66 / DSM 9485) GN=pth PE=3 SV=1

 Score =  151 bits (382), Expect = 4e-36,   Method: Compositional matrix adjust.
 Identities = 78/186 (41%), Positives = 113/186 (60%), Gaps = 3/186 (1%)

Query: 50  WLIVGLGNPGIKYHGTRHNVGFEMIDHIAQAQRIAMNTIQSKALIGIGSIGEVPILLAKP 109
           WLIVGLGNPG +Y  TRHN+GF  ++ +A+   +     ++K+ I  G I    + L KP
Sbjct: 2   WLIVGLGNPGERYARTRHNIGFRSVETLAERHGLTFRNQRAKSEIAEGIIRGQRVALVKP 61

Query: 110 QAYMNFSGESVGPLAAHYQV-PLRHIL-IYDEMSLMNGVLRLQPKGGHGHHNGLKSVMNH 167
           Q YMN SG++V  L   Y++ P R +L IYD++ L    LRL+ +G  G HNG++S++  
Sbjct: 62  QTYMNLSGQAVAALRQWYKIDPARELLVIYDDLDLPFAKLRLRERGSAGTHNGMRSIVGQ 121

Query: 168 LDGCREFPRLCIGIGNPPGKMDMKAYLLQKFSPIEREQIDAALEQGVEAVRTLVLNGFDQ 227
           L G  EFPRL IGIG PPG+MD   Y+L +F+P E   +   L +  +AV  +V  G   
Sbjct: 122 L-GTTEFPRLRIGIGQPPGQMDAADYVLSRFTPEEEAVLPEVLARVADAVEVVVSEGLTA 180

Query: 228 NISRFN 233
            ++R+N
Sbjct: 181 AMNRYN 186

The natural substrate for this enzyme may be peptidyl-tRNAs which drop off the ribosome during protein synthesis.

Chloroflexus aggregans (strain MD-66 / DSM 9485) (taxid: 326427)

EC: 3

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: 2

EC: 9

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	243
224079329	244	predicted protein [Populus trichocarpa]	1.0	0.995	0.807	1e-114
255551384	253	peptidyl-tRNA hydrolase, putative [Ricin	1.0	0.960	0.774	1e-108
449455782	249	PREDICTED: chloroplastic group IIB intro	0.921	0.899	0.814	1e-102
225452074	246	PREDICTED: chloroplastic group IIB intro	0.995	0.983	0.773	1e-101
388501072	247	unknown [Lotus japonicus]	1.0	0.983	0.700	3e-98
358248120	244	uncharacterized protein LOC100804132 [Gl	1.0	0.995	0.725	3e-98
297805938	241	predicted protein [Arabidopsis lyrata su	0.987	0.995	0.704	3e-96
42573527	250	chloroplastic group IIB intron splicing	1.0	0.972	0.703	2e-95
15240875	246	chloroplastic group IIB intron splicing	1.0	0.987	0.703	2e-95
26451849	246	putative CRS2 [Arabidopsis thaliana]	1.0	0.987	0.699	5e-95

>gi|224079329|ref|XP_002305823.1| predicted protein [Populus trichocarpa] gi|222848787|gb|EEE86334.1| predicted protein [Populus trichocarpa]

 Score =  415 bits (1066), Expect = e-114,   Method: Compositional matrix adjust.
 Identities = 197/244 (80%), Positives = 217/244 (88%), Gaps = 1/244 (0%)

Query: 1   MLYALSAPKTCISCPRGPPFPQKRQVSTRLCVHASLPADNGGFKVEYTPWLIVGLGNPGI 60
           MLYA+S P+TCISCPR   F ++  VS RLCV ASLP +  G KVEYTPWLIVGLGNPG 
Sbjct: 1   MLYAVSTPRTCISCPRSSRFHRRNLVSVRLCVRASLPDNANGVKVEYTPWLIVGLGNPGT 60

Query: 61  KYHGTRHNVGFEMIDHIAQAQRIAMNTIQSKALIGIGSIGEVPILLAKPQAYMNFSGESV 120
           KYHGTRHNVGFEMID IAQA+ + MNTIQSKALIGIG IGEVPILLAKPQAYMNFSGESV
Sbjct: 61  KYHGTRHNVGFEMIDRIAQAEGVLMNTIQSKALIGIGCIGEVPILLAKPQAYMNFSGESV 120

Query: 121 GPLAAHYQVPLRHI-LIYDEMSLMNGVLRLQPKGGHGHHNGLKSVMNHLDGCREFPRLCI 179
           GPLAAHY++PLRHI LIYDEM+L NG+LR+QPKGGHGHHNG+KSVM+HLDGCREFPRLCI
Sbjct: 121 GPLAAHYKIPLRHILLIYDEMNLPNGILRVQPKGGHGHHNGVKSVMDHLDGCREFPRLCI 180

Query: 180 GIGNPPGKMDMKAYLLQKFSPIEREQIDAALEQGVEAVRTLVLNGFDQNISRFNMGQKYK 239
           GIGNPPG MDMKA+LLQKFSP EREQIDA+LEQGVEA+RTL+L GF   I+RFN+GQKYK
Sbjct: 181 GIGNPPGTMDMKAFLLQKFSPTEREQIDASLEQGVEAMRTLILGGFTNKITRFNLGQKYK 240

Query: 240 YHAV 243
           YH V
Sbjct: 241 YHKV 244

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255551384|ref|XP_002516738.1| peptidyl-tRNA hydrolase, putative [Ricinus communis] gi|223544111|gb|EEF45636.1| peptidyl-tRNA hydrolase, putative [Ricinus communis]

 Score =  396 bits (1018), Expect = e-108,   Method: Compositional matrix adjust.
 Identities = 196/253 (77%), Positives = 214/253 (84%), Gaps = 10/253 (3%)

Query: 1   MLYALSAPKTCISCPRGPPFPQKRQVSTRLCVHASLPAD-NGGFKVEYTPWLIVGLGNPG 59
           MLYA+S P TCISCPR   F  +   STRL +  SLP + NG  K+EYTPWLIVGLGNPG
Sbjct: 1   MLYAVSTPNTCISCPRNSFFRPRHLASTRLSIRVSLPENGNGVAKIEYTPWLIVGLGNPG 60

Query: 60  IKYHGTRHNV--------GFEMIDHIAQAQRIAMNTIQSKALIGIGSIGEVPILLAKPQA 111
            KYHGTRHNV        GFEMID IA+A+ +AMNTIQSKALIGIG I EVPILL KPQA
Sbjct: 61  NKYHGTRHNVTNASLDLVGFEMIDKIAKAEAVAMNTIQSKALIGIGCIKEVPILLVKPQA 120

Query: 112 YMNFSGESVGPLAAHYQVPLRHIL-IYDEMSLMNGVLRLQPKGGHGHHNGLKSVMNHLDG 170
           YMNFSGESVGPLAAHYQVPLRHIL IYDEMSL NGV+RLQPKGGHGHHNG+KSVM HLDG
Sbjct: 121 YMNFSGESVGPLAAHYQVPLRHILLIYDEMSLPNGVMRLQPKGGHGHHNGVKSVMEHLDG 180

Query: 171 CREFPRLCIGIGNPPGKMDMKAYLLQKFSPIEREQIDAALEQGVEAVRTLVLNGFDQNIS 230
           CREFPRLCIGIGNPPG MDM+A+LLQKFS  EREQIDAAL QG++AVRTLVL+GF+QNI+
Sbjct: 181 CREFPRLCIGIGNPPGTMDMRAFLLQKFSSTEREQIDAALGQGIDAVRTLVLSGFNQNIT 240

Query: 231 RFNMGQKYKYHAV 243
           RFN+GQKYKYH V
Sbjct: 241 RFNLGQKYKYHKV 253

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449455782|ref|XP_004145630.1| PREDICTED: chloroplastic group IIB intron splicing facilitator CRS2-B, chloroplastic-like [Cucumis sativus] gi|449519774|ref|XP_004166909.1| PREDICTED: chloroplastic group IIB intron splicing facilitator CRS2-B, chloroplastic-like [Cucumis sativus]

 Score =  375 bits (963), Expect = e-102,   Method: Compositional matrix adjust.
 Identities = 185/227 (81%), Positives = 199/227 (87%), Gaps = 3/227 (1%)

Query: 20  FPQKRQ-VSTRLCVHASLP-ADNGGFKVEYTPWLIVGLGNPGIKYHGTRHNVGFEMIDHI 77
           FP  +  VSTRL V AS P +D+ G KVEYTPWLIVGLGNPG KYHGTRHNVGFEMID I
Sbjct: 23  FPSTKPLVSTRLSVRASSPDSDSNGLKVEYTPWLIVGLGNPGNKYHGTRHNVGFEMIDSI 82

Query: 78  AQAQRIAMNTIQSKALIGIGSIGEVPILLAKPQAYMNFSGESVGPLAAHYQVPLRHILI- 136
           AQAQ I MNTIQSKALIGIGSIGEVPILLAKPQ YMNF GESVGPLAAHYQ+PLRH+L+ 
Sbjct: 83  AQAQGILMNTIQSKALIGIGSIGEVPILLAKPQTYMNFCGESVGPLAAHYQIPLRHVLLT 142

Query: 137 YDEMSLMNGVLRLQPKGGHGHHNGLKSVMNHLDGCREFPRLCIGIGNPPGKMDMKAYLLQ 196
           YDEM+L NGVLRLQPK GHGHHNG+KSVM HLDG REFPRLCIGIGNPPG MDMKA+LLQ
Sbjct: 143 YDEMNLPNGVLRLQPKAGHGHHNGVKSVMGHLDGRREFPRLCIGIGNPPGTMDMKAFLLQ 202

Query: 197 KFSPIEREQIDAALEQGVEAVRTLVLNGFDQNISRFNMGQKYKYHAV 243
           KFS +ER+QIDAALEQGVEAVRTL LNGF Q ++RFN+ QKYKYH V
Sbjct: 203 KFSSVERKQIDAALEQGVEAVRTLALNGFSQRVNRFNLSQKYKYHKV 249

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225452074|ref|XP_002284030.1| PREDICTED: chloroplastic group IIB intron splicing facilitator CRS2, chloroplastic [Vitis vinifera] gi|296087264|emb|CBI33638.3| unnamed protein product [Vitis vinifera]

 Score =  372 bits (955), Expect = e-101,   Method: Compositional matrix adjust.
 Identities = 191/247 (77%), Positives = 209/247 (84%), Gaps = 5/247 (2%)

Query: 1   MLYALSAPKTCISCPRGPP---FPQKRQVSTRLCVHASLPADNGGFKVEYTPWLIVGLGN 57
           MLYA+S P T ISC R      F ++R    RLCV ASLP D  G KVEYTPWLIVGLGN
Sbjct: 1   MLYAVSGPSTSISCRRSLDYHGFRRRRLAPARLCVSASLP-DANGIKVEYTPWLIVGLGN 59

Query: 58  PGIKYHGTRHNVGFEMIDHIAQAQRIAMNTIQSKALIGIGSIGEVPILLAKPQAYMNFSG 117
           PG KYHGTRHNVGFEMID I+Q + I +NTIQSKALIGIGSIGEVPILLAKPQAYMNFSG
Sbjct: 60  PGNKYHGTRHNVGFEMIDRISQEEGILLNTIQSKALIGIGSIGEVPILLAKPQAYMNFSG 119

Query: 118 ESVGPLAAHYQVPLRHILI-YDEMSLMNGVLRLQPKGGHGHHNGLKSVMNHLDGCREFPR 176
           ESVGPLAA+YQVPLRHIL+ YDEM+L NGVLRL P+GGHG+HNGLK+VM HLDGCREFPR
Sbjct: 120 ESVGPLAAYYQVPLRHILVVYDEMNLPNGVLRLAPRGGHGYHNGLKNVMGHLDGCREFPR 179

Query: 177 LCIGIGNPPGKMDMKAYLLQKFSPIEREQIDAALEQGVEAVRTLVLNGFDQNISRFNMGQ 236
           LCIGIGNPPG MDMKAYLLQKFS  ER+QIDAA EQG+ AVR LVLNGF+ + +RFN+GQ
Sbjct: 180 LCIGIGNPPGTMDMKAYLLQKFSFEERKQIDAAQEQGIGAVRNLVLNGFNHSTTRFNLGQ 239

Query: 237 KYKYHAV 243
           KYKYH V
Sbjct: 240 KYKYHKV 246

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|388501072|gb|AFK38602.1| unknown [Lotus japonicus]

 Score =  363 bits (932), Expect = 3e-98,   Method: Compositional matrix adjust.
 Identities = 173/247 (70%), Positives = 205/247 (82%), Gaps = 4/247 (1%)

Query: 1   MLYALSAPKTCISCPRGPPFPQ---KRQVSTRLCVHASLPADNGGFKVEYTPWLIVGLGN 57
           ML+A SAP  C+S PR   +P    K    TR  V  S+P    G +VEYTPWL+VGLGN
Sbjct: 1   MLHAASAPSLCLSYPRNLHYPSNLTKHPAKTRFSVRCSVPGTKNGAQVEYTPWLVVGLGN 60

Query: 58  PGIKYHGTRHNVGFEMIDHIAQAQRIAMNTIQSKALIGIGSIGEVPILLAKPQAYMNFSG 117
           PG KYHGTRHNVGFE+ID +++A+ I MNTIQSKALIG+GSIG+VP+LLAKPQ YMNFSG
Sbjct: 61  PGSKYHGTRHNVGFEIIDSLSRAEGILMNTIQSKALIGLGSIGDVPVLLAKPQTYMNFSG 120

Query: 118 ESVGPLAAHYQVPLRHI-LIYDEMSLMNGVLRLQPKGGHGHHNGLKSVMNHLDGCREFPR 176
           E+VGPLAA+Y++PLRHI L+YDE SL NGVLRLQPKGGHGHHNG K+VM HLDG R+FPR
Sbjct: 121 EAVGPLAAYYRIPLRHIILVYDETSLPNGVLRLQPKGGHGHHNGSKNVMGHLDGSRDFPR 180

Query: 177 LCIGIGNPPGKMDMKAYLLQKFSPIEREQIDAALEQGVEAVRTLVLNGFDQNISRFNMGQ 236
           L IGIGNPPG MD +A+LLQKFS +ER+QID +LEQGV+A+RTLVL+GF Q++SRFN+GQ
Sbjct: 181 LAIGIGNPPGSMDSRAFLLQKFSSVERQQIDDSLEQGVQAIRTLVLHGFSQHVSRFNLGQ 240

Query: 237 KYKYHAV 243
           KYKYH V
Sbjct: 241 KYKYHKV 247

Source: Lotus japonicus

Species: Lotus japonicus

Genus: Lotus

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|358248120|ref|NP_001239818.1| uncharacterized protein LOC100804132 [Glycine max] gi|255645504|gb|ACU23247.1| unknown [Glycine max]

 Score =  363 bits (932), Expect = 3e-98,   Method: Compositional matrix adjust.
 Identities = 177/244 (72%), Positives = 202/244 (82%), Gaps = 1/244 (0%)

Query: 1   MLYALSAPKTCISCPRGPPFPQKRQVSTRLCVHASLPADNGGFKVEYTPWLIVGLGNPGI 60
           ML+A+SAP  C+S P    +P      T   V  S+     G KVEYTPWLI+GLGNPG 
Sbjct: 1   MLHAVSAPSFCLSYPGNLHYPPSSVQKTCFSVRCSVSQTKNGAKVEYTPWLIIGLGNPGN 60

Query: 61  KYHGTRHNVGFEMIDHIAQAQRIAMNTIQSKALIGIGSIGEVPILLAKPQAYMNFSGESV 120
           KYHGTRHNVGFE+ID +++A+ I MNTIQSKALIGIGSIGEVPILLAKPQ YMNFSGESV
Sbjct: 61  KYHGTRHNVGFEIIDSLSRAEGIQMNTIQSKALIGIGSIGEVPILLAKPQTYMNFSGESV 120

Query: 121 GPLAAHYQVPLRHI-LIYDEMSLMNGVLRLQPKGGHGHHNGLKSVMNHLDGCREFPRLCI 179
           GPLAA+YQVPLRHI L++DE SL NGVLRLQPKGGHGHHNGLK+VM HLDGC  FPRL +
Sbjct: 121 GPLAAYYQVPLRHILLVFDETSLPNGVLRLQPKGGHGHHNGLKNVMGHLDGCSAFPRLAV 180

Query: 180 GIGNPPGKMDMKAYLLQKFSPIEREQIDAALEQGVEAVRTLVLNGFDQNISRFNMGQKYK 239
           GIGNPPG MD++AYLLQKFS  ER+QIDA+LEQ V AVRT+VLNGFDQ+++RFN+GQKYK
Sbjct: 181 GIGNPPGTMDLRAYLLQKFSVEERKQIDASLEQAVAAVRTVVLNGFDQHVNRFNLGQKYK 240

Query: 240 YHAV 243
           YH V
Sbjct: 241 YHKV 244

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297805938|ref|XP_002870853.1| predicted protein [Arabidopsis lyrata subsp. lyrata] gi|297316689|gb|EFH47112.1| predicted protein [Arabidopsis lyrata subsp. lyrata]

 Score =  357 bits (915), Expect = 3e-96,   Method: Compositional matrix adjust.
 Identities = 172/244 (70%), Positives = 199/244 (81%), Gaps = 4/244 (1%)

Query: 1   MLYALSAPKTCISCPRGPPFPQKRQVSTRLCVHASLPADNGGFKVEYTPWLIVGLGNPGI 60
           M  + S P T +  P+    P  ++ S+   + ASLP  +   KVEYTPWLIVGLGNPG 
Sbjct: 1   MFCSSSPPITSLLYPKAQKKPNSKRFSS---LRASLPVSDNKLKVEYTPWLIVGLGNPGF 57

Query: 61  KYHGTRHNVGFEMIDHIAQAQRIAMNTIQSKALIGIGSIGEVPILLAKPQAYMNFSGESV 120
           KY+GTRHN+GFEMIDHIA+A  I+MNTIQSKAL+GIGS+GEVPILL KPQAYMNFSGESV
Sbjct: 58  KYYGTRHNIGFEMIDHIARATEISMNTIQSKALVGIGSVGEVPILLVKPQAYMNFSGESV 117

Query: 121 GPLAAHYQVPLRHIL-IYDEMSLMNGVLRLQPKGGHGHHNGLKSVMNHLDGCREFPRLCI 179
           GPLAA+YQ+PLRHIL IYD+M L NGVLRLQPKGGH  HNGLK+V  HL+GCR +PRL I
Sbjct: 118 GPLAAYYQIPLRHILMIYDDMGLPNGVLRLQPKGGHSQHNGLKNVTEHLNGCRGYPRLSI 177

Query: 180 GIGNPPGKMDMKAYLLQKFSPIEREQIDAALEQGVEAVRTLVLNGFDQNISRFNMGQKYK 239
           GIGNPPG MDMKA+LLQKFSP+ER+QIDA LEQGVE V+TLV  GF  +ISRFN+GQKYK
Sbjct: 178 GIGNPPGNMDMKAFLLQKFSPLERKQIDAGLEQGVEGVKTLVEEGFSDSISRFNLGQKYK 237

Query: 240 YHAV 243
           +H V
Sbjct: 238 FHTV 241

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|42573527|ref|NP_974860.1| chloroplastic group IIB intron splicing facilitator CRS2-A [Arabidopsis thaliana] gi|332006907|gb|AED94290.1| chloroplastic group IIB intron splicing facilitator CRS2-A [Arabidopsis thaliana]

 Score =  354 bits (909), Expect = 2e-95,   Method: Compositional matrix adjust.
 Identities = 173/246 (70%), Positives = 199/246 (80%), Gaps = 3/246 (1%)

Query: 1   MLYALSAPKTCISCPRGPPFPQKRQVSTRLC-VHASLP-ADNGGFKVEYTPWLIVGLGNP 58
           M  A S+P T    P+   F Q +  S R   + ASLP +DN   K EYTPWLIVGLGNP
Sbjct: 5   MFCASSSPITSPLYPKAYKFSQTKSNSKRFSSLRASLPVSDNKLLKFEYTPWLIVGLGNP 64

Query: 59  GIKYHGTRHNVGFEMIDHIAQAQRIAMNTIQSKALIGIGSIGEVPILLAKPQAYMNFSGE 118
           G+KY+GTRHN+GFEMIDHIA+A  I+MNTIQSKAL+GIGS+GEVPILL KPQ YMNFSGE
Sbjct: 65  GLKYYGTRHNIGFEMIDHIARATDISMNTIQSKALVGIGSVGEVPILLVKPQGYMNFSGE 124

Query: 119 SVGPLAAHYQVPLRHIL-IYDEMSLMNGVLRLQPKGGHGHHNGLKSVMNHLDGCREFPRL 177
           SVGPLAA+YQ+PLRHIL IYD+M L NGVLRLQPKGGH  HNGLK+V  HL+GCR +PRL
Sbjct: 125 SVGPLAAYYQIPLRHILMIYDDMGLSNGVLRLQPKGGHSQHNGLKNVTEHLNGCRGYPRL 184

Query: 178 CIGIGNPPGKMDMKAYLLQKFSPIEREQIDAALEQGVEAVRTLVLNGFDQNISRFNMGQK 237
            IGIGNPPG MDMKA+LLQKFSP+ER+Q+D  LEQGVE V+TLV  GF  +ISRFN+GQK
Sbjct: 185 SIGIGNPPGNMDMKAFLLQKFSPLERKQMDEGLEQGVEGVKTLVEEGFSDSISRFNLGQK 244

Query: 238 YKYHAV 243
           YK+H V
Sbjct: 245 YKFHKV 250

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|15240875|ref|NP_198645.1| chloroplastic group IIB intron splicing facilitator CRS2-A [Arabidopsis thaliana] gi|75309164|sp|Q9FKN4.1|CRS2A_ARATH RecName: Full=Chloroplastic group IIB intron splicing facilitator CRS2-A, chloroplastic; AltName: Full=CRS2-like protein A; AltName: Full=Chloroplastic RNA splicing factor 2-A; Flags: Precursor gi|9758861|dbj|BAB09443.1| unnamed protein product [Arabidopsis thaliana] gi|90962962|gb|ABE02405.1| At5g38290 [Arabidopsis thaliana] gi|332006908|gb|AED94291.1| chloroplastic group IIB intron splicing facilitator CRS2-A [Arabidopsis thaliana]

 Score =  354 bits (908), Expect = 2e-95,   Method: Compositional matrix adjust.
 Identities = 173/246 (70%), Positives = 199/246 (80%), Gaps = 3/246 (1%)

Query: 1   MLYALSAPKTCISCPRGPPFPQKRQVSTRLC-VHASLP-ADNGGFKVEYTPWLIVGLGNP 58
           M  A S+P T    P+   F Q +  S R   + ASLP +DN   K EYTPWLIVGLGNP
Sbjct: 1   MFCASSSPITSPLYPKAYKFSQTKSNSKRFSSLRASLPVSDNKLLKFEYTPWLIVGLGNP 60

Query: 59  GIKYHGTRHNVGFEMIDHIAQAQRIAMNTIQSKALIGIGSIGEVPILLAKPQAYMNFSGE 118
           G+KY+GTRHN+GFEMIDHIA+A  I+MNTIQSKAL+GIGS+GEVPILL KPQ YMNFSGE
Sbjct: 61  GLKYYGTRHNIGFEMIDHIARATDISMNTIQSKALVGIGSVGEVPILLVKPQGYMNFSGE 120

Query: 119 SVGPLAAHYQVPLRHIL-IYDEMSLMNGVLRLQPKGGHGHHNGLKSVMNHLDGCREFPRL 177
           SVGPLAA+YQ+PLRHIL IYD+M L NGVLRLQPKGGH  HNGLK+V  HL+GCR +PRL
Sbjct: 121 SVGPLAAYYQIPLRHILMIYDDMGLSNGVLRLQPKGGHSQHNGLKNVTEHLNGCRGYPRL 180

Query: 178 CIGIGNPPGKMDMKAYLLQKFSPIEREQIDAALEQGVEAVRTLVLNGFDQNISRFNMGQK 237
            IGIGNPPG MDMKA+LLQKFSP+ER+Q+D  LEQGVE V+TLV  GF  +ISRFN+GQK
Sbjct: 181 SIGIGNPPGNMDMKAFLLQKFSPLERKQMDEGLEQGVEGVKTLVEEGFSDSISRFNLGQK 240

Query: 238 YKYHAV 243
           YK+H V
Sbjct: 241 YKFHKV 246

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|26451849|dbj|BAC43017.1| putative CRS2 [Arabidopsis thaliana]

 Score =  352 bits (904), Expect = 5e-95,   Method: Compositional matrix adjust.
 Identities = 172/246 (69%), Positives = 199/246 (80%), Gaps = 3/246 (1%)

Query: 1   MLYALSAPKTCISCPRGPPFPQKRQVSTRLC-VHASLP-ADNGGFKVEYTPWLIVGLGNP 58
           M  A S+P T    P+   F Q +  S R   + ASLP +DN   K EYTPWLIVGLGNP
Sbjct: 1   MFCASSSPITSPLYPKAYKFSQTKSNSKRFSSLRASLPVSDNKLLKFEYTPWLIVGLGNP 60

Query: 59  GIKYHGTRHNVGFEMIDHIAQAQRIAMNTIQSKALIGIGSIGEVPILLAKPQAYMNFSGE 118
           G+KY+GTRHN+GFEMIDHIA+A  I+MNTIQSKAL+GIGS+GEVPILL KPQ YMNFSGE
Sbjct: 61  GLKYYGTRHNIGFEMIDHIARATDISMNTIQSKALVGIGSVGEVPILLVKPQGYMNFSGE 120

Query: 119 SVGPLAAHYQVPLRHIL-IYDEMSLMNGVLRLQPKGGHGHHNGLKSVMNHLDGCREFPRL 177
           SVGPLAA+YQ+PLRHIL IYD++ L NGVLRLQPKGGH  HNGLK+V  HL+GCR +PRL
Sbjct: 121 SVGPLAAYYQIPLRHILMIYDDLGLSNGVLRLQPKGGHSQHNGLKNVTEHLNGCRGYPRL 180

Query: 178 CIGIGNPPGKMDMKAYLLQKFSPIEREQIDAALEQGVEAVRTLVLNGFDQNISRFNMGQK 237
            IGIGNPPG MDMKA+LLQKFSP+ER+Q+D  LEQGVE V+TLV  GF  +ISRFN+GQK
Sbjct: 181 SIGIGNPPGNMDMKAFLLQKFSPLERKQMDEGLEQGVEGVKTLVEEGFSDSISRFNLGQK 240

Query: 238 YKYHAV 243
           YK+H V
Sbjct: 241 YKFHKV 246

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	243
TAIR|locus:2173298	250	AT5G38290 [Arabidopsis thalian	1.0	0.972	0.703	8.3e-90
TAIR|locus:2181412	240	AT5G16140 [Arabidopsis thalian	0.913	0.925	0.741	6.2e-85
TAIR|locus:2183234	219	AT5G19830 [Arabidopsis thalian	0.798	0.885	0.584	9.3e-59
TAIR|locus:2014134	288	AT1G18440 [Arabidopsis thalian	0.761	0.642	0.559	6.8e-56
TIGR_CMR|CHY_0196	187	CHY_0196 "peptidyl-tRNA hydrol	0.757	0.983	0.417	2.8e-34
UNIPROTKB|P65865	191	pth "Peptidyl-tRNA hydrolase"	0.728	0.926	0.422	2.3e-32
TIGR_CMR|BA_0050	186	BA_0050 "peptidyl-tRNA hydrola	0.748	0.978	0.391	6e-32
TIGR_CMR|DET_0595	189	DET_0595 "peptidyl-tRNA hydrol	0.748	0.962	0.379	3.9e-28
TIGR_CMR|GSU_0663	193	GSU_0663 "peptidyl-tRNA hydrol	0.744	0.937	0.369	5.2e-26
TIGR_CMR|VC_2184	196	VC_2184 "peptidyl-tRNA hydrola	0.753	0.933	0.345	1.8e-25

TAIR|locus:2173298 AT5G38290 [Arabidopsis thaliana (taxid:3702)]

 Score = 896 (320.5 bits), Expect = 8.3e-90, P = 8.3e-90
 Identities = 173/246 (70%), Positives = 199/246 (80%)

Query:     1 MLYALSAPKTCISCPRGPPFPQKRQVSTRLC-VHASLP-ADNGGFKVEYTPWLIVGLGNP 58
             M  A S+P T    P+   F Q +  S R   + ASLP +DN   K EYTPWLIVGLGNP
Sbjct:     5 MFCASSSPITSPLYPKAYKFSQTKSNSKRFSSLRASLPVSDNKLLKFEYTPWLIVGLGNP 64

Query:    59 GIKYHGTRHNVGFEMIDHIAQAQRIAMNTIQSKALIGIGSIGEVPILLAKPQAYMNFSGE 118
             G+KY+GTRHN+GFEMIDHIA+A  I+MNTIQSKAL+GIGS+GEVPILL KPQ YMNFSGE
Sbjct:    65 GLKYYGTRHNIGFEMIDHIARATDISMNTIQSKALVGIGSVGEVPILLVKPQGYMNFSGE 124

Query:   119 SVGPLAAHYQVPLRHIL-IYDEMSLMNGVLRLQPKGGHGHHNGLKSVMNHLDGCREFPRL 177
             SVGPLAA+YQ+PLRHIL IYD+M L NGVLRLQPKGGH  HNGLK+V  HL+GCR +PRL
Sbjct:   125 SVGPLAAYYQIPLRHILMIYDDMGLSNGVLRLQPKGGHSQHNGLKNVTEHLNGCRGYPRL 184

Query:   178 CIGIGNPPGKMDMKAYLLQKFSPIEREQIDAALEQGVEAVRTLVLNGFDQNISRFNMGQK 237
              IGIGNPPG MDMKA+LLQKFSP+ER+Q+D  LEQGVE V+TLV  GF  +ISRFN+GQK
Sbjct:   185 SIGIGNPPGNMDMKAFLLQKFSPLERKQMDEGLEQGVEGVKTLVEEGFSDSISRFNLGQK 244

Query:   238 YKYHAV 243
             YK+H V
Sbjct:   245 YKFHKV 250

GO:0004045 "aminoacyl-tRNA hydrolase activity" evidence=IEA;ISS

GO:0006412 "translation" evidence=ISS

GO:0009507 "chloroplast" evidence=ISM

GO:0006783 "heme biosynthetic process" evidence=RCA

GO:0009965 "leaf morphogenesis" evidence=RCA

GO:0016556 "mRNA modification" evidence=RCA

GO:0030154 "cell differentiation" evidence=RCA

TAIR|locus:2181412 AT5G16140 [Arabidopsis thaliana (taxid:3702)]

 Score = 850 (304.3 bits), Expect = 6.2e-85, P = 6.2e-85
 Identities = 166/224 (74%), Positives = 189/224 (84%)

Query:    21 PQKRQVSTRLCVHASLPADNGGFKVEYTPWLIVGLGNPGIKYHGTRHNVGFEMIDHIAQA 80
             P  R+   R+C   S   D+  FKVEYTPWLIVGLGNPG KYHGTRHNVGFEMID +A+ 
Sbjct:    18 PVFRKQRFRVCSSTSGGEDDR-FKVEYTPWLIVGLGNPGNKYHGTRHNVGFEMIDVLARK 76

Query:    81 QRIAMNTIQSKALIGIGSIGEVPILLAKPQAYMNFSGESVGPLAAHYQVPLRHIL-IYDE 139
             + + MNTIQSKALIGIG+I +VPILLAKPQ YMNFSGESVG LA+HY+VPLRHIL IYDE
Sbjct:    77 EGVLMNTIQSKALIGIGAIEDVPILLAKPQTYMNFSGESVGSLASHYRVPLRHILMIYDE 136

Query:   140 MSLMNGVLRLQPKGGHGHHNGLKSVMNHLDGCREFPRLCIGIGNPPGKMDMKAYLLQKFS 199
             M+L NGVLRLQPKGG G+HNG+KSVM HLDG R FPRL IGIG PPG MDMKA+LLQKFS
Sbjct:   137 MALPNGVLRLQPKGGQGYHNGVKSVMGHLDGRRNFPRLSIGIGKPPGNMDMKAFLLQKFS 196

Query:   200 PIEREQIDAALEQGVEAVRTLVLNGFDQNISRFNMGQKYKYHAV 243
             P+E++QI+ ALEQG EAV+TLVLNGF+Q ISRFN+ QKYK+H V
Sbjct:   197 PLEQKQIEEALEQGSEAVKTLVLNGFNQGISRFNLVQKYKFHKV 240

GO:0004045 "aminoacyl-tRNA hydrolase activity" evidence=IEA;ISS

GO:0006412 "translation" evidence=ISS

GO:0009507 "chloroplast" evidence=ISM

GO:0006783 "heme biosynthetic process" evidence=RCA

TAIR|locus:2183234 AT5G19830 [Arabidopsis thaliana (taxid:3702)]

 Score = 603 (217.3 bits), Expect = 9.3e-59, P = 9.3e-59
 Identities = 114/195 (58%), Positives = 148/195 (75%)

Query:    47 YTPWLIVGLGNPGIKYHGTRHNVGFEMIDHIAQAQRIAMNTIQSKALIGIGSIGEVPILL 106
             + PWL +GLGNPG KY GTRHN+GFEMID  A++  I MN +  KA++G G + ++P++L
Sbjct:    16 HRPWLFLGLGNPGDKYKGTRHNIGFEMIDVFAESVGIQMNLVNFKAIMGQGFVADLPVIL 75

Query:   107 AKPQAYMNFSGESVGPLAAHYQVPLRHILI-YDEMSLMNGVLRLQPKGGHGHHNGLKSVM 165
             AKPQ YMN SGES GPLAA+Y++PL  +L+ +D+M L  GVLRLQ KGGHG HNGLKSVM
Sbjct:    76 AKPQTYMNLSGESSGPLAAYYKLPLNRVLVVHDDMQLPCGVLRLQEKGGHGCHNGLKSVM 135

Query:   166 NHLDGCREFPRLCIGIGNPPGKMDMKAYLLQKFSPIEREQIDAALEQGVEAVRTLVLNGF 225
             NH  G REF RL IGIG PPG+MD KA+LLQKFS   RE++D AL +GV+A++ ++   F
Sbjct:   136 NHFRGNREFARLRIGIGKPPGQMDPKAFLLQKFSMPARERMDKALAEGVDALKLVLAKDF 195

Query:   226 DQNISRFNMGQKYKY 240
              ++   FN+ QKYK+
Sbjct:   196 GESWRLFNVEQKYKH 210

GO:0004045 "aminoacyl-tRNA hydrolase activity" evidence=IEA;ISS

GO:0005739 "mitochondrion" evidence=ISM

GO:0006412 "translation" evidence=ISS

GO:0006783 "heme biosynthetic process" evidence=RCA

TAIR|locus:2014134 AT1G18440 [Arabidopsis thaliana (taxid:3702)]

 Score = 576 (207.8 bits), Expect = 6.8e-56, P = 6.8e-56
 Identities = 104/186 (55%), Positives = 143/186 (76%)

Query:    49 PWLIVGLGNPGIKYHGTRHNVGFEMIDHIAQAQRIAMNTIQSKALIGIGSIGEVPILLAK 108
             PWLIVGLGNPG KY GTRHNVGFEM+D +A A+ I+MNT+  KAL G G IG +PI+LAK
Sbjct:    94 PWLIVGLGNPGKKYQGTRHNVGFEMVDALADAEGISMNTVNFKALFGKGVIGNIPIMLAK 153

Query:   109 PQAYMNFSGESVGPLAAHYQVPLRHILI-YDEMSLMNGVLRLQPKGGHGHHNGLKSVMNH 167
             PQ +MN SGESVG + + Y++PL+ +L+ YD++ L  G LRL PKGGHG HNG++S+++ 
Sbjct:   154 PQTFMNLSGESVGQIVSFYKIPLKQVLVVYDDLDLPFGKLRLLPKGGHGGHNGMRSIIDR 213

Query:   168 LDGCREFPRLCIGIGNPPGKMDMKAYLLQKFSPIEREQIDAALEQGVEAVRTLVLNGFDQ 227
             L G R+FPRL IGIG PPGKMD   ++L++F+  E+E++D   + G+EA+R L+L GF++
Sbjct:   214 LKGSRDFPRLRIGIGRPPGKMDTANFVLRQFNRQEQEELDHTFQTGLEAIRILLLEGFNK 273

Query:   228 NISRFN 233
             + +  N
Sbjct:   274 SATFVN 279

GO:0004045 "aminoacyl-tRNA hydrolase activity" evidence=IEA;ISS

GO:0006412 "translation" evidence=ISS

GO:0009507 "chloroplast" evidence=ISM;IDA

GO:0006783 "heme biosynthetic process" evidence=RCA

TIGR_CMR|CHY_0196 CHY_0196 "peptidyl-tRNA hydrolase" [Carboxydothermus hydrogenoformans Z-2901 (taxid:246194)]

 Score = 372 (136.0 bits), Expect = 2.8e-34, P = 2.8e-34
 Identities = 78/187 (41%), Positives = 117/187 (62%)

Query:    50 WLIVGLGNPGIKYHGTRHNVGFEMIDHIAQAQRIAMNTIQSKALIGIGSIGEVPILLAKP 109
             ++I GLGNPG +Y  TRHN GF ++D +A+   I +   + K+L+G G I  V +LL KP
Sbjct:     2 FIIAGLGNPGQEYENTRHNAGFMVVDELAKKHGILITKRKFKSLVGEGEILGVKVLLLKP 61

Query:   110 QAYMNFSGESVGPLAAHYQVPL-RHILIYDEMSLMNGVLRLQPKGGHGHHNGLKSVMNHL 168
             Q YMN SG +V    + Y++PL R +++YD++ L  G +RL+ KG  G H G+ S+++ L
Sbjct:    62 QTYMNLSGTAVQEAVSFYKLPLSRLVVVYDDLDLPLGKIRLRLKGSAGGHRGMGSIISCL 121

Query:   169 DGCREFPRLCIGIGNPPGKMDMKAYLLQKFSPIEREQIDAALEQGVEAVRTLVLNGFDQN 228
              G  E PRL IGIG P    D+K Y+LQ F+  ERE ++  L+   EA+   +  GF++ 
Sbjct:   122 -GSEEIPRLKIGIGRP-AVGDVKDYVLQPFTGAEREILEPTLKLAAEAITVALTEGFNKA 179

Query:   229 ISRFNMG 235
             ++ FN G
Sbjct:   180 MTDFNRG 186

GO:0004045 "aminoacyl-tRNA hydrolase activity" evidence=ISS

GO:0006412 "translation" evidence=ISS

UNIPROTKB|P65865 pth "Peptidyl-tRNA hydrolase" [Mycobacterium tuberculosis (taxid:1773)]

 Score = 354 (129.7 bits), Expect = 2.3e-32, P = 2.3e-32
 Identities = 76/180 (42%), Positives = 107/180 (59%)

Query:    49 PWLIVGLGNPGIKYHGTRHNVGFEMIDHIAQAQRIAMNTIQ-SKALIGIGSIGEVPILLA 107
             P L+VGLGNPG  Y  TRHN+GF + D +A          + S A +  G      ++LA
Sbjct:     4 PLLVVGLGNPGANYARTRHNLGFVVADLLAARLGAKFKAHKRSGAEVATGRSAGRSLVLA 63

Query:   108 KPQAYMNFSGESVGPLAAHYQV-PLRHILIYDEMSLMNGVLRLQPKGGHGHHNGLKSVMN 166
             KP+ YMN SG  +GPLA  Y V P   I+I+D++ L  G +RL+  GG G HNGL+SV+ 
Sbjct:    64 KPRCYMNESGRQIGPLAKFYSVAPANIIVIHDDLDLEFGRIRLKIGGGEGGHNGLRSVVA 123

Query:   167 HLDGCREFPRLCIGIGNPPGKMDMKAYLLQKFSPIEREQIDAALEQGVEAVRTLVLNGFD 226
              L G ++F R+ IGIG PPG+ D  A++L+ F+P ER ++    EQ  +A   L+  G +
Sbjct:   124 AL-GTKDFQRVRIGIGRPPGRKDPAAFVLENFTPAERAEVPTICEQAADATELLIEQGME 182

GO:0004045 "aminoacyl-tRNA hydrolase activity" evidence=IDA

GO:0005886 "plasma membrane" evidence=IDA

GO:0040007 "growth" evidence=IMP

TIGR_CMR|BA_0050 BA_0050 "peptidyl-tRNA hydrolase" [Bacillus anthracis str. Ames (taxid:198094)]

 Score = 350 (128.3 bits), Expect = 6.0e-32, P = 6.0e-32
 Identities = 72/184 (39%), Positives = 113/184 (61%)

Query:    51 LIVGLGNPGIKYHGTRHNVGFEMIDHIAQAQRIAMNTIQSKALIGIGSIGEVPILLAKPQ 110
             LIVGLGNPG +Y  TRHN+GF  ID +A+   I++N  + K L G G +    ++L KP 
Sbjct:     3 LIVGLGNPGREYELTRHNIGFMAIDELAKRWNISLNEQKFKGLFGAGFVNGEKVILLKPL 62

Query:   111 AYMNFSGESVGPLAAHYQVPLRH-ILIYDEMSLMNGVLRLQPKGGHGHHNGLKSVMNHLD 169
              YMN SGES+ PL  +Y++ +   +++YD++ +  G LRL+ KG  G HNG+KS ++HL 
Sbjct:    63 TYMNLSGESIRPLMDYYKIDVEDFVVLYDDLDIPVGKLRLRMKGSAGGHNGVKSTISHL- 121

Query:   170 GCREFPRLCIGIGNPPGKMDMKAYLLQKFSPIEREQIDAALEQGVEAVRTLVLNGFDQNI 229
             G +EF R+ +GI  P   M +  Y+L +F+  E   ++ ++E+  +A    +   F Q +
Sbjct:   122 GTQEFQRIRMGIDRPKNGMKVVDYVLGRFTSEEIPDVNHSIEKAADACEEWLNKPFLQIM 181

Query:   230 SRFN 233
             + FN
Sbjct:   182 NTFN 185

GO:0004045 "aminoacyl-tRNA hydrolase activity" evidence=ISS

GO:0006412 "translation" evidence=ISS

TIGR_CMR|DET_0595 DET_0595 "peptidyl-tRNA hydrolase" [Dehalococcoides ethenogenes 195 (taxid:243164)]

 Score = 314 (115.6 bits), Expect = 3.9e-28, P = 3.9e-28
 Identities = 71/187 (37%), Positives = 106/187 (56%)

Query:    51 LIVGLGNPGIKYHGTRHNVGFEMIDHIAQAQRIAMNTIQSKALIGIGSIGEVPILLAKPQ 110
             LI+GLGNPG +Y G RHNVGF+ +   A+   I+ +     +  G G I +  I+LAKPQ
Sbjct:     3 LIIGLGNPGKEYSGNRHNVGFQCLSRFAKDNHISFDKKCCLSRTGSGRINDEEIVLAKPQ 62

Query:   111 AYMNFSGESVGPLAAHYQVPLRHILIY-DEMSLMNGVLRLQPKGGHGHHNGLKSVMNHLD 169
              YMN SG++   L   Y +    I++  D++ L  G +RL+  G  G HNG+ S++  + 
Sbjct:    63 TYMNLSGKAASQLLRRYNLKAADIIVVQDDLDLPAGKIRLRLGGSAGGHNGISSIITDI- 121

Query:   170 GCREFPRLCIGIGNPPGK---MDMKAYLLQKFSPIEREQIDAALEQGVEAVRTLVLNGFD 226
             G +EF RL IGIG P  +    ++  ++L  F   ERE +D A+ +  EA+  L+  G D
Sbjct:   122 GTKEFIRLKIGIGKPDSRNNGTEVVDHVLGNFGGEEREIMDKAITRASEALTCLLTFGLD 181

Query:   227 QNISRFN 233
                +RFN
Sbjct:   182 TASNRFN 188

GO:0004045 "aminoacyl-tRNA hydrolase activity" evidence=ISS

GO:0006412 "translation" evidence=ISS

TIGR_CMR|GSU_0663 GSU_0663 "peptidyl-tRNA hydrolase" [Geobacter sulfurreducens PCA (taxid:243231)]

 Score = 294 (108.6 bits), Expect = 5.2e-26, P = 5.2e-26
 Identities = 68/184 (36%), Positives = 105/184 (57%)

Query:    51 LIVGLGNPGIKYHGTRHNVGFEMIDHIAQAQRIAMNTIQSKALIGIGSIGEVPILLAKPQ 110
             LIVGLGNPG KY  TRHN GF ++D +A A   ++       + G G+     +LL KPQ
Sbjct:     5 LIVGLGNPGPKYLWTRHNAGFMVLDRLAHAIGASVTRKSFSGVFGEGAWHGERLLLLKPQ 64

Query:   111 AYMNFSGESVGPLAAHYQVPLRH-ILIYDEMSLMNGVLRLQPKGGHGHHNGLKSVMNHLD 169
              YMN SG SV      +++PL   I+I+D++ +  G ++++  GGHG HNGL+S++  L 
Sbjct:    65 TYMNLSGRSVAEALRFHKLPLCDTIVIHDDLDIPFGRVKVKEGGGHGGHNGLRSLVQELG 124

Query:   170 GCREFPRLCIGIGNPPGKMDMKAYLLQKFSPIEREQIDAALEQGVEAVRTLVLNGFDQNI 229
             G   F R+ +GIG P    D+  Y+L  FS  E   +   L+  ++ + +L+  G  + +
Sbjct:   125 GAG-FVRVRVGIGRPVHG-DVVNYVLTNFSQDEMADLAHLLDGTLDLLESLLTAGLPKTM 182

Query:   230 SRFN 233
             S +N
Sbjct:   183 SLYN 186

GO:0004045 "aminoacyl-tRNA hydrolase activity" evidence=ISS

GO:0006412 "translation" evidence=ISS

TIGR_CMR|VC_2184 VC_2184 "peptidyl-tRNA hydrolase" [Vibrio cholerae O1 biovar El Tor (taxid:686)]

 Score = 289 (106.8 bits), Expect = 1.8e-25, P = 1.8e-25
 Identities = 64/185 (34%), Positives = 105/185 (56%)

Query:    51 LIVGLGNPGIKYHGTRHNVGFEMIDHIAQAQRIAM-NTIQSKALIGIGSIGEVPILLAKP 109
             L+VGL NPG +Y  TRHN G  +++ +A+   + + N  +   L G   I    + +  P
Sbjct:     7 LLVGLANPGPEYAKTRHNAGAWVVEELARIHNVTLKNEPKFFGLTGRLLINSQELRVLIP 66

Query:   110 QAYMNFSGESVGPLAAHYQVPLRHILI-YDEMSLMNGVLRLQPKGGHGHHNGLKSVMNHL 168
               +MN SG+++  LA  YQ+    I++ +DE+ L  GV + +  GGHG HNGLK  ++ L
Sbjct:    67 TTFMNLSGKAIAALANFYQIKPEEIMVAHDELDLPPGVAKFKQGGGHGGHNGLKDTISKL 126

Query:   169 DGCREFPRLCIGIGNPPGKMDMKAYLLQKFSPIEREQIDAALEQGVEAVRTLVLNGFDQN 228
                +EF RL +GIG+P  K  +  Y+L K    E+E +DAA+++ V  +  L+ +G  + 
Sbjct:   127 GNNKEFYRLRLGIGHPGHKDKVAGYVLGKAPAKEQECLDAAVDESVRCLEILMKDGLTKA 186

Query:   229 ISRFN 233
              +R +
Sbjct:   187 QNRLH 191

GO:0004045 "aminoacyl-tRNA hydrolase activity" evidence=ISS

GO:0008152 "metabolic process" evidence=ISS

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q9LF14	CRS2B_ARATH	No assigned EC number	0.7410	0.9135	0.925	no	no
Q9FKN4	CRS2A_ARATH	No assigned EC number	0.7032	1.0	0.9878	yes	no
Q5ZCL8	CRS2_ORYSJ	No assigned EC number	0.7162	0.8765	0.8223	yes	no
Q9M5P4	CRS2_MAIZE	No assigned EC number	0.6680	0.9341	0.8867	N/A	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

Prediction Level	EC number	Confidence of Prediction
3rd Layer	3.1.1.29	0.914
3rd Layer	3.1.1	0.921

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	243
cd02406	191	cd02406, CRS2, Chloroplast RNA splicing 2 (CRS2) i	1e-120
cd00462	171	cd00462, PTH, Peptidyl-tRNA hydrolase (PTH) is a m	3e-78
pfam01195	183	pfam01195, Pept_tRNA_hydro, Peptidyl-tRNA hydrolas	6e-75
PRK05426	189	PRK05426, PRK05426, peptidyl-tRNA hydrolase; Provi	6e-71
COG0193	190	COG0193, Pth, Peptidyl-tRNA hydrolase [Translation	2e-64
TIGR00447	188	TIGR00447, pth, peptidyl-tRNA hydrolase	1e-51

>gnl|CDD|239090 cd02406, CRS2, Chloroplast RNA splicing 2 (CRS2) is a nuclear-encoded protein required for the splicing of group II introns in the chloroplast

 Score =  339 bits (872), Expect = e-120
 Identities = 148/191 (77%), Positives = 168/191 (87%), Gaps = 1/191 (0%)

Query: 48  TPWLIVGLGNPGIKYHGTRHNVGFEMIDHIAQAQRIAMNTIQSKALIGIGSIGEVPILLA 107
           TPWLI GLGNPG KY GTRHNVGFEM+D IA+A+ I MNTIQ K+L+GIGSIG+VP+LLA
Sbjct: 1   TPWLIAGLGNPGNKYKGTRHNVGFEMVDRIAEAEGITMNTIQFKSLLGIGSIGDVPVLLA 60

Query: 108 KPQAYMNFSGESVGPLAAHYQVPLRHIL-IYDEMSLMNGVLRLQPKGGHGHHNGLKSVMN 166
           KPQ YMN+SGESVGPLAA+Y+VPLRHIL IYD+MSL NGVLRLQPKGGHG HNGL+SV+ 
Sbjct: 61  KPQTYMNYSGESVGPLAAYYKVPLRHILVIYDDMSLPNGVLRLQPKGGHGRHNGLQSVIE 120

Query: 167 HLDGCREFPRLCIGIGNPPGKMDMKAYLLQKFSPIEREQIDAALEQGVEAVRTLVLNGFD 226
           HLDG REFPRL IGIG+PPGKMD +A+LLQKFS  EREQID ALEQGV+AVRTLVL GF+
Sbjct: 121 HLDGSREFPRLSIGIGSPPGKMDPRAFLLQKFSSEEREQIDTALEQGVDAVRTLVLKGFN 180

Query: 227 QNISRFNMGQK 237
            +  RFN+ QK
Sbjct: 181 GSAERFNLVQK 191

CRS2 forms stable complexes with two CRS2-associated factors, CAF1 and CAF2, which are required for the splicing of distinct subsets of CRS2-dependent introns. CRS2 is closely related to bacterial peptidyl-tRNA hydrolases (PTH). Length = 191

>gnl|CDD|238259 cd00462, PTH, Peptidyl-tRNA hydrolase (PTH) is a monomeric protein that cleaves the ester bond linking the nascent peptide and tRNA when peptidyl-tRNA is released prematurely from the ribosome

 Score =  233 bits (596), Expect = 3e-78
 Identities = 86/172 (50%), Positives = 116/172 (67%), Gaps = 2/172 (1%)

Query: 51  LIVGLGNPGIKYHGTRHNVGFEMIDHIAQAQRIAMNTIQSKALIGIGSIGEVPILLAKPQ 110
           LIVGLGNPG KY  TRHNVGF ++D +A+   ++    + K L+G G IG   +LL KPQ
Sbjct: 1   LIVGLGNPGPKYENTRHNVGFMVLDALAERYGVSFKKKKKKGLVGEGRIGGEKVLLLKPQ 60

Query: 111 AYMNFSGESVGPLAAHYQVPLRHIL-IYDEMSLMNGVLRLQPKGGHGHHNGLKSVMNHLD 169
            YMN SGE+V  LA  Y++P   IL I+D++ L  G +RL+  GG G HNGLKS++ HL 
Sbjct: 61  TYMNLSGEAVAALANFYKIPPEDILVIHDDLDLPLGKIRLKKGGGSGGHNGLKSIIAHL- 119

Query: 170 GCREFPRLCIGIGNPPGKMDMKAYLLQKFSPIEREQIDAALEQGVEAVRTLV 221
           G  +FPRL IGIG PP KMD+  Y+L KFS  ERE ++ A+E+  +A+  ++
Sbjct: 120 GTEDFPRLRIGIGRPPNKMDVADYVLSKFSKEERELLEEAIEKAADALEDIL 171

This ensures the recycling of peptidyl-tRNAs into tRNAs produced through abortion of translation and is essential for cell viability.This group also contains chloroplast RNA splicing 2 (CRS2), which is closely related nuclear-encoded protein required for the splicing of nine group II introns in chloroplasts. Length = 171

>gnl|CDD|216355 pfam01195, Pept_tRNA_hydro, Peptidyl-tRNA hydrolase

 Score =  224 bits (574), Expect = 6e-75
 Identities = 89/184 (48%), Positives = 121/184 (65%), Gaps = 3/184 (1%)

Query: 51  LIVGLGNPGIKYHGTRHNVGFEMIDHIAQAQRIAMNTIQS-KALIGIGSIGEVPILLAKP 109
           LIVGLGNPG KY  TRHNVGF +ID +A+   +++   +  K LI  G I    ++L KP
Sbjct: 1   LIVGLGNPGPKYENTRHNVGFMVIDRLAERLGVSLKKKKKFKGLIAKGRIEGEKVILLKP 60

Query: 110 QAYMNFSGESVGPLAAHYQVPLRHIL-IYDEMSLMNGVLRLQPKGGHGHHNGLKSVMNHL 168
           Q YMN SGE+V  +A  Y++P   IL ++D++ L  G LRL+  GG G HNGLKS++ HL
Sbjct: 61  QTYMNLSGEAVRAIARFYKIPPEDILVVHDDLDLPLGKLRLKKGGGAGGHNGLKSIIQHL 120

Query: 169 DGCREFPRLCIGIGNPPGKMDMKAYLLQKFSPIEREQIDAALEQGVEAVRTLVLNGFDQN 228
            G  +F RL IGIG PP K D+  Y+L KFSP E E +D A+E+  +A+  L+  GFD+ 
Sbjct: 121 -GTNDFKRLRIGIGRPPDKNDVADYVLSKFSPEELELLDKAIEKAADALEDLIEGGFDKA 179

Query: 229 ISRF 232
           ++RF
Sbjct: 180 MNRF 183

Length = 183

>gnl|CDD|235457 PRK05426, PRK05426, peptidyl-tRNA hydrolase; Provisional

 Score =  214 bits (549), Expect = 6e-71
 Identities = 81/187 (43%), Positives = 118/187 (63%), Gaps = 4/187 (2%)

Query: 49  PWLIVGLGNPGIKYHGTRHNVGFEMIDHIAQ-AQRIAMNTIQSKALIGIGSIGEVPILLA 107
             LIVGLGNPG +Y  TRHN+GF ++D +A+          + K LI  G I    ++L 
Sbjct: 2   MKLIVGLGNPGPEYANTRHNIGFMVVDELARRLGGSLKEKKKFKGLIAEGRINGEKVILL 61

Query: 108 KPQAYMNFSGESVGPLAAHYQVPLRHIL-IYDEMSLMNGVLRLQPKGGHGHHNGLKSVMN 166
           KPQ YMN SG++V  LA  Y++P   IL I+D++ L  G +RL+  GG G HNGLKS++ 
Sbjct: 62  KPQTYMNLSGKAVAALANFYKIPPEDILVIHDDLDLPPGKIRLKKGGGAGGHNGLKSIIA 121

Query: 167 HLDGCREFPRLCIGIGNPPGKMDMKAYLLQKFSPIEREQIDAALEQGVEAVRTLVLNGFD 226
           HL G ++F RL IGIG  P K  +  Y+L KFS  E+E +D A+++  +A+  L+  GF+
Sbjct: 122 HL-GTQDFWRLRIGIGR-PDKKKVVDYVLGKFSKEEQELLDKAIDKAADAIELLLEGGFE 179

Query: 227 QNISRFN 233
           + +++FN
Sbjct: 180 KAMNKFN 186

Length = 189

>gnl|CDD|223271 COG0193, Pth, Peptidyl-tRNA hydrolase [Translation, ribosomal structure and biogenesis]

 Score =  198 bits (506), Expect = 2e-64
 Identities = 80/189 (42%), Positives = 117/189 (61%), Gaps = 5/189 (2%)

Query: 48  TPWLIVGLGNPGIKYHGTRHNVGFEMIDHIAQAQRIAMNTIQSK--ALIGIGSIGEVPIL 105
              LIVGLGNPG KY  TRHNVGF ++D +A+   ++    + K   L+  G+I    ++
Sbjct: 1   MMKLIVGLGNPGKKYAKTRHNVGFMVVDLLARRLNLS-FKEEKKFNGLVAKGTIEGEKVI 59

Query: 106 LAKPQAYMNFSGESVGPLAAHYQVPLRHIL-IYDEMSLMNGVLRLQPKGGHGHHNGLKSV 164
           L KP  YMN SG++VG LA+ Y++    IL ++DE+ L  G +RL+  GG G HNGLKS+
Sbjct: 60  LLKPTTYMNLSGKAVGALASFYKIKPEDILVVHDELDLPLGKVRLKLGGGAGGHNGLKSI 119

Query: 165 MNHLDGCREFPRLCIGIGNPPGKMDMKAYLLQKFSPIEREQIDAALEQGVEAVRTLVLNG 224
           + HL G   F RL IGIG P    D+  Y+L KFS  ERE +D A+++  +A+  L+   
Sbjct: 120 IAHL-GTNNFYRLRIGIGRPGNGEDVADYVLGKFSKEERELLDKAIDKAADALELLLEGD 178

Query: 225 FDQNISRFN 233
           F++ +++ N
Sbjct: 179 FEKAMNKLN 187

Length = 190

>gnl|CDD|213531 TIGR00447, pth, peptidyl-tRNA hydrolase

 Score =  165 bits (421), Expect = 1e-51
 Identities = 76/186 (40%), Positives = 114/186 (61%), Gaps = 4/186 (2%)

Query: 51  LIVGLGNPGIKYHGTRHNVGFEMIDHIAQAQRIAMNTIQSK-ALIGIGSIGEVPILLAKP 109
           LIVGLGNPG KY GTRHN GF ++D +A    +++ T +        G +    ++L KP
Sbjct: 3   LIVGLGNPGKKYAGTRHNAGFWVLDLLASRLGLSLRTEKKFFGYTERGLLSGKKVILLKP 62

Query: 110 QAYMNFSGESVGPLAAHYQV-PLRHILIYDEMSLMNGVLRLQPKGGHGHHNGLKSVMNHL 168
             YMN SGE+V  LA+ Y++ P   ++++DE+ L  G +RL+  GG G HNGLKS+++HL
Sbjct: 63  LTYMNLSGEAVRALASFYRIKPAELLVVHDELDLPLGKVRLKMGGGAGGHNGLKSIISHL 122

Query: 169 DGCREFPRLCIGIGNPPGKMDMKAYLLQKFSPIEREQIDAALEQGVEAV-RTLVLNGFDQ 227
            G   F RL IGIG+P G   +  ++L KF+  E   ++ AL++ VEA+  +     F +
Sbjct: 123 -GTNNFNRLRIGIGSPGGSNKVVEFVLSKFTKSELPLLEKALDKAVEALEMSFSEGAFLK 181

Query: 228 NISRFN 233
            ++RFN
Sbjct: 182 AMNRFN 187

The natural substrate for this enzyme may be peptidyl-tRNAs that drop off the ribosome during protein synthesis. Peptidyl-tRNA hydrolase is a bacterial protein; YHR189W from Saccharomyces cerevisiae appears to be orthologous and likely has the same function [Protein synthesis, Other]. Length = 188

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	243
cd02406	191	CRS2 Chloroplast RNA splicing 2 (CRS2) is a nuclea	100.0
COG0193	190	Pth Peptidyl-tRNA hydrolase [Translation, ribosoma	100.0
TIGR00447	188	pth peptidyl-tRNA hydrolase. The natural substrate	100.0
PRK05426	189	peptidyl-tRNA hydrolase; Provisional	100.0
PF01195	184	Pept_tRNA_hydro: Peptidyl-tRNA hydrolase; InterPro	100.0
cd00462	171	PTH Peptidyl-tRNA hydrolase (PTH) is a monomeric p	100.0
KOG2255	224	consensus Peptidyl-tRNA hydrolase [Translation, ri	100.0
PRK11544	156	hycI hydrogenase 3 maturation protease; Provisiona	93.88
TIGR00142	146	hycI hydrogenase maturation protease HycI. Hydroge	89.99
cd06070	140	H2MP_like-2 Putative [NiFe] hydrogenase-specific C	88.51
COG0680	160	HyaD Ni,Fe-hydrogenase maturation factor [Energy p	86.37
PRK10264	195	hydrogenase 1 maturation protease; Provisional	84.7
TIGR00072	145	hydrog_prot hydrogenase maturation protease. HycI	84.02
cd06062	146	H2MP_MemB-H2up Endopeptidases belonging to membran	83.28
cd06064	150	H2MP_F420-Reduc Endopeptidases belonging to F420-r	82.36

>cd02406 CRS2 Chloroplast RNA splicing 2 (CRS2) is a nuclear-encoded protein required for the splicing of group II introns in the chloroplast

Probab=100.00  E-value=3.5e-74  Score=498.50  Aligned_cols=189  Identities=78%  Similarity=1.267  Sum_probs=181.1

Q ss_pred             CeEEEeecCCCCCcCcccchHHHHHHHHHHHHcCCCccccccceEEEEEEECCeeEEEEeCCCcccccchhHHHHHHHcC
Q 026114           49 PWLIVGLGNPGIKYHGTRHNVGFEMIDHIAQAQRIAMNTIQSKALIGIGSIGEVPILLAKPQAYMNFSGESVGPLAAHYQ  128 (243)
Q Consensus        49 ~~LIVGLGNPG~~Y~~TRHNvGf~vld~La~~~~~~~~~~~~~~~~~~~~i~~~~v~L~KP~TyMN~SG~aV~~i~~~~k  128 (243)
                      +||||||||||++|++|||||||+++|.||+++++++++.++++.++++.+++++++|+||+||||+||++|+++++||+
T Consensus         2 ~~LIvGLGNPG~~Y~~TRHNiGf~vld~La~~~~~~~~~~k~~~~~~~~~~~~~~v~L~kP~TyMN~SG~aV~~~~~~yk   81 (191)
T cd02406           2 PWLIAGLGNPGNKYKGTRHNVGFEMVDRIAEAEGITMNTIQFKSLLGIGSIGDVPVLLAKPQTYMNYSGESVGPLAAYYK   81 (191)
T ss_pred             cEEEEEcCCCchhhCcCchhHHHHHHHHHHHHcCCCccccccceEEEEEEECCeEEEEEeCCCchhcCHHHHHHHHHHhC
Confidence            58999999999999999999999999999999998876667889999999999999999999999999999999999999


Q ss_pred             CCCccEE-EEecCCCCCceEEEccCCCCCCCCcHHHHHHhhcCCCCccEEEEcccCCCCCCccccccccCCCHHHHHHHH
Q 026114          129 VPLRHIL-IYDEMSLMNGVLRLQPKGGHGHHNGLKSVMNHLDGCREFPRLCIGIGNPPGKMDMKAYLLQKFSPIEREQID  207 (243)
Q Consensus       129 i~~~~il-IhDDldl~~G~irlk~~Gs~gGHNGLKSIi~~L~gt~~f~RLrIGIGrP~~~~~v~~yVLs~Fs~~E~~~l~  207 (243)
                      +++++|| ||||||||+|++|+|.+||++||||||||+++|+++++|+|||||||||+...++++|||++|+++|++.|+
T Consensus        82 i~~~~ilVihDdldl~~G~irlk~gGs~gGHNGlkSI~~~Lggt~~f~RlrIGIGrP~~~~~v~~yVL~~f~~~E~~~l~  161 (191)
T cd02406          82 VPLRHILVIYDDMSLPNGVLRLQPKGGHGRHNGLQSVIEHLDGSREFPRLSIGIGSPPGKMDPRAFLLQKFSSEEREQID  161 (191)
T ss_pred             CCHHHEEEEEECCCCCCCeEEEcCCCCCCCcCCHHHHHHHhCCCCCeEEEEEEeCCCCCCCchhhhhcCCCCHHHHHHHH
Confidence            9999999 999999999999999999999999999999999657899999999999987678999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHhCHHHHHHhhhCCCC
Q 026114          208 AALEQGVEAVRTLVLNGFDQNISRFNMGQK  237 (243)
Q Consensus       208 ~~l~~a~~al~~li~~g~~~~mn~~n~~~~  237 (243)
                      ++++.|+++++.|+.++++++||+||+.+|
T Consensus       162 ~~~~~a~~~~~~~~~~~~~~~~n~~n~~~~  191 (191)
T cd02406         162 TALEQGVDAVRTLVLKGFNGSAERFNLVQK  191 (191)
T ss_pred             HHHHHHHHHHHHHHHCCHHHHHHHHhCCCC
Confidence            999999999999999999999999998775

CRS2 forms stable complexes with two CRS2-associated factors, CAF1 and CAF2, which are required for the splicing of distinct subsets of CRS2-dependent introns. CRS2 is closely related to bacterial peptidyl-tRNA hydrolases (PTH).

>COG0193 Pth Peptidyl-tRNA hydrolase [Translation, ribosomal structure and biogenesis]

Probab=100.00  E-value=4.9e-74  Score=495.41  Aligned_cols=187  Identities=42%  Similarity=0.716  Sum_probs=180.2

Q ss_pred             cCeEEEeecCCCCCcCcccchHHHHHHHHHHHHcCCCc-cccccceEEEEEEECCeeEEEEeCCCcccccchhHHHHHHH
Q 026114           48 TPWLIVGLGNPGIKYHGTRHNVGFEMIDHIAQAQRIAM-NTIQSKALIGIGSIGEVPILLAKPQAYMNFSGESVGPLAAH  126 (243)
Q Consensus        48 ~~~LIVGLGNPG~~Y~~TRHNvGf~vld~La~~~~~~~-~~~~~~~~~~~~~i~~~~v~L~KP~TyMN~SG~aV~~i~~~  126 (243)
                      +++|||||||||++|+.|||||||+++|.||+++++++ ...++.+.++++.+.+++|+|+||+||||+||++|.++++|
T Consensus         1 ~~kLIVGLGNPG~~Y~~TRHNvGf~~vD~La~~~~~~~~~~~kf~~~~~~~~i~g~kv~l~kP~TyMNlSG~~V~~~~~f   80 (190)
T COG0193           1 MMKLIVGLGNPGKKYAKTRHNVGFMVVDLLARRLNLSFKEEKKFNGLVAKGTIEGEKVILLKPTTYMNLSGKAVGALASF   80 (190)
T ss_pred             CcEEEEECCCCchhhcccchhHHHHHHHHHHHHhCCCCccccccCceeEEEEeCCcEEEEecCccceeCcHHHHHHHHHH
Confidence            46899999999999999999999999999999999998 55678899999999999999999999999999999999999


Q ss_pred             cCCCCccEE-EEecCCCCCceEEEccCCCCCCCCcHHHHHHhhcCCCCccEEEEcccCCCCCCccccccccCCCHHHHHH
Q 026114          127 YQVPLRHIL-IYDEMSLMNGVLRLQPKGGHGHHNGLKSVMNHLDGCREFPRLCIGIGNPPGKMDMKAYLLQKFSPIEREQ  205 (243)
Q Consensus       127 ~ki~~~~il-IhDDldl~~G~irlk~~Gs~gGHNGLKSIi~~L~gt~~f~RLrIGIGrP~~~~~v~~yVLs~Fs~~E~~~  205 (243)
                      |++++++|| ||||||||+|++|||.+||+|||||||||+++| ||++|+|||||||||+..+++++|||++|+++|++.
T Consensus        81 y~i~~~~ilVvhDdLdl~~G~vrlk~~Gg~gGHNGlKSi~~~l-Gt~~f~RlRiGIGrP~~~~~v~~~VL~~f~~~E~~~  159 (190)
T COG0193          81 YKIKPEDILVVHDELDLPLGKVRLKLGGGAGGHNGLKSIIAHL-GTNNFYRLRIGIGRPGNGEDVADYVLGKFSKEEREL  159 (190)
T ss_pred             hCCCHHHEEEEeeccCCCCceEEEEcCCCCCCcccHHHHHHHh-CCCccceEEEEcCCCCCCCchhHhhcCCCCHHHHHH
Confidence            999999999 999999999999999999999999999999999 599999999999999888899999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHHhCHHHHHHhhhCC
Q 026114          206 IDAALEQGVEAVRTLVLNGFDQNISRFNMG  235 (243)
Q Consensus       206 l~~~l~~a~~al~~li~~g~~~~mn~~n~~  235 (243)
                      |+++++.++++++.++..+++++||+||+.
T Consensus       160 l~~~~~~a~~~~~~~~~~~~~~~mn~~~~~  189 (190)
T COG0193         160 LDKAIDKAADALELLLEGDFEKAMNKLNAL  189 (190)
T ss_pred             HHHHHHHHHHHHHHHHHHhHHHHHHHHhcc
Confidence            999999999999999999999999999975

>TIGR00447 pth peptidyl-tRNA hydrolase

Probab=100.00  E-value=8.8e-72  Score=482.46  Aligned_cols=185  Identities=42%  Similarity=0.686  Sum_probs=176.5

Q ss_pred             CeEEEeecCCCCCcCcccchHHHHHHHHHHHHcCCCccc-cccceEEEEEEECCeeEEEEeCCCcccccchhHHHHHHHc
Q 026114           49 PWLIVGLGNPGIKYHGTRHNVGFEMIDHIAQAQRIAMNT-IQSKALIGIGSIGEVPILLAKPQAYMNFSGESVGPLAAHY  127 (243)
Q Consensus        49 ~~LIVGLGNPG~~Y~~TRHNvGf~vld~La~~~~~~~~~-~~~~~~~~~~~i~~~~v~L~KP~TyMN~SG~aV~~i~~~~  127 (243)
                      +||||||||||++|++|||||||+++|.||++++.++.+ .++.+.+++..+++.+++|+||+||||+||++|++++++|
T Consensus         1 ~~LIvGLGNPG~~Y~~TRHNiGf~~ld~La~~~~~~~~~~~~~~~~~~~~~~~~~~v~L~kP~TyMN~SG~~V~~~~~~~   80 (188)
T TIGR00447         1 IKLIVGLGNPGKKYAGTRHNAGFWVLDLLASRLGLSLRTEKKFFGYTERGLLSGKKVILLKPLTYMNLSGEAVRALASFY   80 (188)
T ss_pred             CEEEEEeCCCchhhCcCchHHHHHHHHHHHHHcCcCCcccccceEEEEEEEECCeEEEEEeCCcchhcCcHHHHHHHHHh
Confidence            489999999999999999999999999999999988763 4567888888899999999999999999999999999999


Q ss_pred             CCCCccEE-EEecCCCCCceEEEccCCCCCCCCcHHHHHHhhcCCCCccEEEEcccCCCCCCccccccccCCCHHHHHHH
Q 026114          128 QVPLRHIL-IYDEMSLMNGVLRLQPKGGHGHHNGLKSVMNHLDGCREFPRLCIGIGNPPGKMDMKAYLLQKFSPIEREQI  206 (243)
Q Consensus       128 ki~~~~il-IhDDldl~~G~irlk~~Gs~gGHNGLKSIi~~L~gt~~f~RLrIGIGrP~~~~~v~~yVLs~Fs~~E~~~l  206 (243)
                      +++++++| ||||||||+|++|+|++||++||||||||+++| ++++|+|||||||||+.+.++++|||++|+++|++.|
T Consensus        81 ~i~~~~ilVihDdldl~~G~irlk~~G~~gGHNGlkSI~~~l-gt~~f~RlrIGIGrP~~~~~v~~yVL~~f~~~e~~~l  159 (188)
T TIGR00447        81 RIKPAELLVVHDELDLPLGKVRLKMGGGAGGHNGLKSIISHL-GTNNFNRLRIGIGSPGGSNKVVEFVLSKFTKSELPLL  159 (188)
T ss_pred             CCChHHEEEEEecCCCCCceEEEecCCCCCCcCCHHHHHHHh-CCCCcceEEEEeCCCCCCCchhhhccCCCCHHHHHHH
Confidence            99999999 999999999999999999999999999999999 6899999999999998777899999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHhC-HHHHHHhhhC
Q 026114          207 DAALEQGVEAVRTLVLNG-FDQNISRFNM  234 (243)
Q Consensus       207 ~~~l~~a~~al~~li~~g-~~~~mn~~n~  234 (243)
                      +++++.++++++.|+.++ ++++||+||+
T Consensus       160 ~~~i~~~~~~~~~~~~~~~~~~~~n~~n~  188 (188)
T TIGR00447       160 EKALDKAVEALEMSFSEGAFLKAMNRFNS  188 (188)
T ss_pred             HHHHHHHHHHHHHHHHCCCHHHHHHHhhC
Confidence            999999999999999999 9999999995

The natural substrate for this enzyme may be peptidyl-tRNAs that drop off the ribosome during protein synthesis. Peptidyl-tRNA hydrolase is a bacterial protein; YHR189W from Saccharomyces cerevisiae appears to be orthologous and likely has the same function.

>PRK05426 peptidyl-tRNA hydrolase; Provisional

Probab=100.00  E-value=1e-70  Score=476.11  Aligned_cols=186  Identities=44%  Similarity=0.751  Sum_probs=176.2

Q ss_pred             cCeEEEeecCCCCCcCcccchHHHHHHHHHHHHcCCCcc-ccccceEEEEEEECCeeEEEEeCCCcccccchhHHHHHHH
Q 026114           48 TPWLIVGLGNPGIKYHGTRHNVGFEMIDHIAQAQRIAMN-TIQSKALIGIGSIGEVPILLAKPQAYMNFSGESVGPLAAH  126 (243)
Q Consensus        48 ~~~LIVGLGNPG~~Y~~TRHNvGf~vld~La~~~~~~~~-~~~~~~~~~~~~i~~~~v~L~KP~TyMN~SG~aV~~i~~~  126 (243)
                      ++||||||||||++|++|||||||+++|.||++++..+. ..++++.++++.+++.+++|+||+||||+||++|++++++
T Consensus         1 ~~~LivGLGNPG~~Y~~TRHNvGf~~ld~la~~~~~~~~~~~k~~~~~~~~~~~~~~v~L~kP~TyMN~SG~~V~~~~~~   80 (189)
T PRK05426          1 MMKLIVGLGNPGPEYANTRHNIGFMVVDELARRLGGSLKEKKKFKGLIAEGRINGEKVILLKPQTYMNLSGKAVAALANF   80 (189)
T ss_pred             CcEEEEEeCCCchhhCcCchHHHHHHHHHHHHHcCCCCcccccccEEEEEEEECCeEEEEEeCCcchhcCcHHHHHHHHH
Confidence            368999999999999999999999999999999887654 3466789999999989999999999999999999999999


Q ss_pred             cCCCCccEE-EEecCCCCCceEEEccCCCCCCCCcHHHHHHhhcCCCCccEEEEcccCCCCCCccccccccCCCHHHHHH
Q 026114          127 YQVPLRHIL-IYDEMSLMNGVLRLQPKGGHGHHNGLKSVMNHLDGCREFPRLCIGIGNPPGKMDMKAYLLQKFSPIEREQ  205 (243)
Q Consensus       127 ~ki~~~~il-IhDDldl~~G~irlk~~Gs~gGHNGLKSIi~~L~gt~~f~RLrIGIGrP~~~~~v~~yVLs~Fs~~E~~~  205 (243)
                      |+++++++| ||||||+|+|++|+|++||++||||||||+++| ++++|+|||||||||+ ..++++|||++|+++|++.
T Consensus        81 ~~i~~~~ilVihDdldl~~G~~r~k~gGs~~GHNGlkSI~~~l-gt~~f~RlriGIGrP~-~~~v~~yVL~~f~~~E~~~  158 (189)
T PRK05426         81 YKIPPEDILVIHDDLDLPPGKIRLKKGGGAGGHNGLKSIIAHL-GTQDFWRLRIGIGRPD-KKKVVDYVLGKFSKEEQEL  158 (189)
T ss_pred             hCCCHHHEEEEEecCCCCCceEEEecCCCCCCcCCHHHHHHHh-CCCCeeEEEEEeCCCC-CCCcchhhcCCCCHHHHHH
Confidence            999999999 999999999999999999999999999999999 5889999999999997 5689999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHHhCHHHHHHhhhCC
Q 026114          206 IDAALEQGVEAVRTLVLNGFDQNISRFNMG  235 (243)
Q Consensus       206 l~~~l~~a~~al~~li~~g~~~~mn~~n~~  235 (243)
                      |++++++|+++++.|+.++++++||+||+.
T Consensus       159 l~~~~~~a~~~v~~~~~~~~~~~~~~~n~~  188 (189)
T PRK05426        159 LDKAIDKAADAIELLLEGGFEKAMNKFNSK  188 (189)
T ss_pred             HHHHHHHHHHHHHHHHHCCHHHHHHHHhCC
Confidence            999999999999999999999999999964

>PF01195 Pept_tRNA_hydro: Peptidyl-tRNA hydrolase; InterPro: IPR001328 Peptidyl-tRNA hydrolase (3

Probab=100.00  E-value=6.5e-70  Score=468.50  Aligned_cols=182  Identities=47%  Similarity=0.838  Sum_probs=162.4

Q ss_pred             EEEeecCCCCCcCcccchHHHHHHHHHHHHcCCCccccc-cceEEEEEEECCeeEEEEeCCCcccccchhHHHHHHHcCC
Q 026114           51 LIVGLGNPGIKYHGTRHNVGFEMIDHIAQAQRIAMNTIQ-SKALIGIGSIGEVPILLAKPQAYMNFSGESVGPLAAHYQV  129 (243)
Q Consensus        51 LIVGLGNPG~~Y~~TRHNvGf~vld~La~~~~~~~~~~~-~~~~~~~~~i~~~~v~L~KP~TyMN~SG~aV~~i~~~~ki  129 (243)
                      |||||||||++|++|||||||+++|.||+.++.+|.+.+ +++.++.+.+.+.+++|+||+||||+||++|++++++|++
T Consensus         1 LivGLGNPG~~Y~~TRHNvG~~~ld~la~~~~~~~~~~~~~~~~~~~~~~~~~~v~L~KP~TyMN~SG~~V~~~~~~~~i   80 (184)
T PF01195_consen    1 LIVGLGNPGPKYENTRHNVGFMVLDRLASRLGLSWKQKKKFKSLISEGSIKGEKVILLKPQTYMNLSGKAVKKILSFYKI   80 (184)
T ss_dssp             EEEE---SSTTTTTSGGGHHHHHHHHHHHHTT---EEEGGGTEEEEEEEETTEEEEEEEESSTGGGHHHHHHHHHHHTT-
T ss_pred             CEEEcCCCChhhcCCCcCchHHHHHHHHHHhCCCccccccceeEEEEEEEeeeeEEEEcCCCeEeCccHhHHHHHHHhCC
Confidence            799999999999999999999999999999999886654 7788888899999999999999999999999999999999


Q ss_pred             CCccEE-EEecCCCCCceEEEccCCCCCCCCcHHHHHHhhcCCCCccEEEEcccCCCCCCccccccccCCCHHHHHHHHH
Q 026114          130 PLRHIL-IYDEMSLMNGVLRLQPKGGHGHHNGLKSVMNHLDGCREFPRLCIGIGNPPGKMDMKAYLLQKFSPIEREQIDA  208 (243)
Q Consensus       130 ~~~~il-IhDDldl~~G~irlk~~Gs~gGHNGLKSIi~~L~gt~~f~RLrIGIGrP~~~~~v~~yVLs~Fs~~E~~~l~~  208 (243)
                      +++++| ||||+|+|+|++|+|++||++||||||||+++| +|++|+|||||||||+...++++|||++|+++|++.|++
T Consensus        81 ~~~~ilVihDdldl~~G~irlk~~Gs~~GHNGlkSI~~~L-gt~~f~RlrIGIGrp~~~~~v~~yVL~~f~~~E~~~l~~  159 (184)
T PF01195_consen   81 PPENILVIHDDLDLPLGKIRLKKGGSSGGHNGLKSIIQHL-GTEDFPRLRIGIGRPPSKEDVADYVLSKFSPEERELLDK  159 (184)
T ss_dssp             -GGGEEEEEEETTSSTTEEEEEESS--TT-HHHHHHHHHC-TSSGSEEEEEEE--TSTTSGHHHHHTSB-HHHHHHHHHH
T ss_pred             CcceEEEEEeccCCCCCeEEEccCCCCCCCCCHHHHHHHh-ccccceeEEEecCCCCCcchHHHHHhcCCCHHHHHHHHH
Confidence            999999 999999999999999999999999999999999 589999999999999877899999999999999999999


Q ss_pred             HHHHHHHHHHHHHHhCHHHHHHhhh
Q 026114          209 ALEQGVEAVRTLVLNGFDQNISRFN  233 (243)
Q Consensus       209 ~l~~a~~al~~li~~g~~~~mn~~n  233 (243)
                      ++++|+++++.|++++++++||+||
T Consensus       160 ~~~~a~~~l~~~i~~~~~~~mn~~n  184 (184)
T PF01195_consen  160 VIPQAAEALEQIIEGGFEKAMNKFN  184 (184)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHCCHHHHHHHhC
Confidence            9999999999999999999999998

1.1.29 from EC) (PTH) is a bacterial enzyme that cleaves peptidyl-tRNA or N-acyl-aminoacyl-tRNA to yield free peptides or N-acyl-amino acids and tRNA. The natural substrate for this enzyme may be peptidyl-tRNA which drop off the ribosome during protein synthesis [, ]. Bacterial PTH has been found to be evolutionary related to a yeast protein [].; GO: 0004045 aminoacyl-tRNA hydrolase activity; PDB: 3KJZ_A 3KK0_A 3P2J_A 3V2I_A 3TCN_A 3TD6_A 2Z2K_A 3TD2_A 2Z2J_B 2JRC_A ....

>cd00462 PTH Peptidyl-tRNA hydrolase (PTH) is a monomeric protein that cleaves the ester bond linking the nascent peptide and tRNA when peptidyl-tRNA is released prematurely from the ribosome

Probab=100.00  E-value=5.9e-69  Score=458.79  Aligned_cols=170  Identities=51%  Similarity=0.892  Sum_probs=163.3

Q ss_pred             EEEeecCCCCCcCcccchHHHHHHHHHHHHcCCCccccccceEEEEEEECCeeEEEEeCCCcccccchhHHHHHHHcCCC
Q 026114           51 LIVGLGNPGIKYHGTRHNVGFEMIDHIAQAQRIAMNTIQSKALIGIGSIGEVPILLAKPQAYMNFSGESVGPLAAHYQVP  130 (243)
Q Consensus        51 LIVGLGNPG~~Y~~TRHNvGf~vld~La~~~~~~~~~~~~~~~~~~~~i~~~~v~L~KP~TyMN~SG~aV~~i~~~~ki~  130 (243)
                      |||||||||++|++|||||||+++|.||++++.++.+.++++.++++.+++++++|+||+||||+||++|++++++|+++
T Consensus         1 LIvGLGNPG~~Y~~TRHNvGf~~ld~La~~~~~~~~~~~~~~~~~~~~~~~~~v~L~kP~TyMN~SG~~V~~~~~~~~i~   80 (171)
T cd00462           1 LIVGLGNPGPKYENTRHNVGFMVLDALAERYGVSFKKKKKKGLVGEGRIGGEKVLLLKPQTYMNLSGEAVAALANFYKIP   80 (171)
T ss_pred             CEEEECCCCcccCcCchHHHHHHHHHHHHHcCCCCCccccCEEEEEEEECCEEEEEEeCCcccccccHHHHHHHHhcCCC
Confidence            69999999999999999999999999999999988777778999999999999999999999999999999999999999


Q ss_pred             CccEE-EEecCCCCCceEEEccCCCCCCCCcHHHHHHhhcCCCCccEEEEcccCCCCCCccccccccCCCHHHHHHHHHH
Q 026114          131 LRHIL-IYDEMSLMNGVLRLQPKGGHGHHNGLKSVMNHLDGCREFPRLCIGIGNPPGKMDMKAYLLQKFSPIEREQIDAA  209 (243)
Q Consensus       131 ~~~il-IhDDldl~~G~irlk~~Gs~gGHNGLKSIi~~L~gt~~f~RLrIGIGrP~~~~~v~~yVLs~Fs~~E~~~l~~~  209 (243)
                      ++++| ||||||||+|++|+|++||++||||||||+++| +|++|+|||||||||+.+.++++|||++|+++|++.|+++
T Consensus        81 ~~~ilVihDdldl~~G~vrlk~~G~~gGHNGlkSI~~~l-gt~~f~RlriGIGrP~~~~~v~~yVL~~f~~~E~~~l~~~  159 (171)
T cd00462          81 PEDILVIHDDLDLPLGKIRLKKGGGSGGHNGLKSIIAHL-GTEDFPRLRIGIGRPPNKMDVADYVLSKFSKEERELLEEA  159 (171)
T ss_pred             hhHEEEEEecCCCCCceEEEeCCCCCCCCCCHHHHHHHh-CCCCeeEEEEEeCCCCCCCChhhhhcCCCCHHHHHHHHHH
Confidence            99999 999999999999999999999999999999999 5899999999999998778999999999999999999999


Q ss_pred             HHHHHHHHHHHH
Q 026114          210 LEQGVEAVRTLV  221 (243)
Q Consensus       210 l~~a~~al~~li  221 (243)
                      ++.|+++++.++
T Consensus       160 ~~~~~~~~~~~~  171 (171)
T cd00462         160 IEKAADALEDIL  171 (171)
T ss_pred             HHHHHHHHHHhC
Confidence            999999998763

This ensures the recycling of peptidyl-tRNAs into tRNAs produced through abortion of translation and is essential for cell viability.This group also contains chloroplast RNA splicing 2 (CRS2), which is closely related nuclear-encoded protein required for the splicing of nine group II introns in chloroplasts.

>KOG2255 consensus Peptidyl-tRNA hydrolase [Translation, ribosomal structure and biogenesis]

Probab=100.00  E-value=9e-62  Score=420.13  Aligned_cols=222  Identities=56%  Similarity=0.916  Sum_probs=197.6

Q ss_pred             CccccCCCcccccCCCCCCCCCCccccceeEEEec-CCCCCCCccccccCeEEEeecCCCCCcCcccchHHHHHHHHHHH
Q 026114            1 MLYALSAPKTCISCPRGPPFPQKRQVSTRLCVHAS-LPADNGGFKVEYTPWLIVGLGNPGIKYHGTRHNVGFEMIDHIAQ   79 (243)
Q Consensus         1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~LIVGLGNPG~~Y~~TRHNvGf~vld~La~   79 (243)
                      |+|++++|...-.-|+..-++     +.||++.|+ .|.....      +|+|+||||||++|.+|||||||.|+|.||+
T Consensus         1 m~~~~~~~~~~~~~p~~~i~~-----~qr~~~~c~l~~~~~~k------~wli~GLGNPg~~y~gTRHnvG~~Ml~~lar   69 (224)
T KOG2255|consen    1 MTCGGGVPMAYKFLPKKLIAR-----KQRFSVHCDLKPRVSIK------PWLIVGLGNPGSKYVGTRHNVGFEMLDMLAR   69 (224)
T ss_pred             CcCCCCCcceeeecccccccc-----ccchheeeecccCCCCC------ceEEEecCCCcccccccchhhHHHHHHHHHH
Confidence            899999988776666654443     455654444 3443222      7999999999999999999999999999999


Q ss_pred             HcCCCccccccceEEEEEEECCeeEEEEeCCCcccccchhHHHHHHHcCCCCccEE-EEecCCCCCceEEEccCCCCCCC
Q 026114           80 AQRIAMNTIQSKALIGIGSIGEVPILLAKPQAYMNFSGESVGPLAAHYQVPLRHIL-IYDEMSLMNGVLRLQPKGGHGHH  158 (243)
Q Consensus        80 ~~~~~~~~~~~~~~~~~~~i~~~~v~L~KP~TyMN~SG~aV~~i~~~~ki~~~~il-IhDDldl~~G~irlk~~Gs~gGH  158 (243)
                      +++++.++.+.++..+.+.+++.++++++|++|||.||++|.+++..|+++.++++ |||||++|+|+++|+++||++||
T Consensus        70 rlgv~~nt~s~~a~~~l~~v~d~~~~llrp~qymN~SgesV~kva~~y~i~~~~ivvIhDEl~l~~Gkl~Lrp~gs~rgH  149 (224)
T KOG2255|consen   70 RLGVPMNTISSKALEGLGLVGDVPILLLRPQQYMNFSGESVGKVAALYKIPLRHIVVIHDELELPLGKLRLRPGGSHRGH  149 (224)
T ss_pred             HhCCcccccCcccccceeeecceeeEeeCcHhhhccccchhhhhHHhhcchheeEEEEeccccCcCceEEeccCCCcccc
Confidence            99999888887888888999999999999999999999999999999999999999 99999999999999999999999


Q ss_pred             CcHHHHHHhhcCCCCccEEEEcccCCCCCCccccccccCCCHHHHHHHHHHHHHHHHHHHHHHHhCHHHHHHhhhCCC
Q 026114          159 NGLKSVMNHLDGCREFPRLCIGIGNPPGKMDMKAYLLQKFSPIEREQIDAALEQGVEAVRTLVLNGFDQNISRFNMGQ  236 (243)
Q Consensus       159 NGLKSIi~~L~gt~~f~RLrIGIGrP~~~~~v~~yVLs~Fs~~E~~~l~~~l~~a~~al~~li~~g~~~~mn~~n~~~  236 (243)
                      ||+||++.+++++..|+||+||||||++++|+++|||++|++.|++   +.+++..+.++.++.+++..-+++||..|
T Consensus       150 NGvrs~~~~l~g~~~fpRL~iGIGrppg~~d~~a~vLskfsp~e~k---e~Let~l~~~~~lil~~l~~~is~~~lg~  224 (224)
T KOG2255|consen  150 NGVRSVFNCLNGRRSFPRLSIGIGRPPGNEDVKAFVLSKFSPAEQK---ELLETLLEHVKTLILQGLQQSISRFNLGQ  224 (224)
T ss_pred             ccHHHHHhhccCCcccceeeeecCCCCCchhhhHHHHHhcChhhhH---HHHHHHHhhhHHHHHHHHHHhcccCcCCC
Confidence            9999999999888899999999999999999999999999999998   44666777788888889999999999764

>PRK11544 hycI hydrogenase 3 maturation protease; Provisional

Probab=93.88  E-value=2.2  Score=35.82  Aligned_cols=135  Identities=18%  Similarity=0.234  Sum_probs=75.6

Q ss_pred             CeEEEeecCCCCCcCcccchHHHHHHHHHHHHcCCCccccccceEEEEEEECCeeEEEEeCCCcccccchhHHHHHHHcC
Q 026114           49 PWLIVGLGNPGIKYHGTRHNVGFEMIDHIAQAQRIAMNTIQSKALIGIGSIGEVPILLAKPQAYMNFSGESVGPLAAHYQ  128 (243)
Q Consensus        49 ~~LIVGLGNPG~~Y~~TRHNvGf~vld~La~~~~~~~~~~~~~~~~~~~~i~~~~v~L~KP~TyMN~SG~aV~~i~~~~k  128 (243)
                      ..+|+|+|||-..    -==+|..++++|++.. .  .     .           +.++.-.|    .|.-+-.++..  
T Consensus         2 ~~lVlGiGN~L~g----DDGvG~~v~~~L~~~~-~--~-----~-----------v~vid~gt----~~~~~~~~i~~--   52 (156)
T PRK11544          2 TDVVLTVGNSMMG----DDGAGPLLAEKLAAAP-K--G-----G-----------WVVIDGGS----APENDIVAIRE--   52 (156)
T ss_pred             cEEEEEeCccccc----cCcHHHHHHHHHhccC-C--C-----C-----------eEEEECCC----CHHHHHHHHHh--
Confidence            4699999999643    2349999999997642 1  0     0           11221112    12222222332  


Q ss_pred             CCCccEEEEec--CCCCCceEEEccC-------CCCCCCCcHHHHHHhhcCCCCccEEEE-cccCCCCCCccccccccCC
Q 026114          129 VPLRHILIYDE--MSLMNGVLRLQPK-------GGHGHHNGLKSVMNHLDGCREFPRLCI-GIGNPPGKMDMKAYLLQKF  198 (243)
Q Consensus       129 i~~~~ilIhDD--ldl~~G~irlk~~-------Gs~gGHNGLKSIi~~L~gt~~f~RLrI-GIGrP~~~~~v~~yVLs~F  198 (243)
                      ..++.+||.|=  .+.++|.++.-..       ..+.+.-||..++..+.+  ..+++.| ||= |.   ++ +| =..+
T Consensus        53 ~~~d~vIiVDA~~~g~~PG~v~~~~~~~~~~~~~~s~H~~~l~~~l~~l~~--~~p~v~iigI~-~~---~~-~~-g~~L  124 (156)
T PRK11544         53 LRPERLLIVDATDMGLNPGEIRIIDPDDIAEMFMMTTHNMPLNYLIDQLKE--DVPEVIFLGIQ-PD---IV-GF-YYPM  124 (156)
T ss_pred             cCCCEEEEEECCccCcCCCEEEEEchhhcccccCCCCCcCCHHHHHHHHhc--CCCcEEEEEEE-ee---ec-cC-CCCC
Confidence            23577778784  5678999987311       124445589999988853  3456554 443 32   22 22 2355


Q ss_pred             CHHHHHHHHHHHHHHHHHHHHHHHhC
Q 026114          199 SPIEREQIDAALEQGVEAVRTLVLNG  224 (243)
Q Consensus       199 s~~E~~~l~~~l~~a~~al~~li~~g  224 (243)
                      |++=    .+.++++++.++.|...+
T Consensus       125 S~~v----~~av~~~~~~l~~~~~~~  146 (156)
T PRK11544        125 TQPV----KDAVETVYQRLEGWEGNG  146 (156)
T ss_pred             CHHH----HHHHHHHHHHHHHhhccC
Confidence            5554    444566667777776544

>TIGR00142 hycI hydrogenase maturation protease HycI

Probab=89.99  E-value=9.7  Score=31.32  Aligned_cols=133  Identities=16%  Similarity=0.177  Sum_probs=72.9

Q ss_pred             eEEEeecCCCCCcCcccchHHHHHHHHHHHHcCCCccccccceEEEEEEECCeeEEEEeCCCcccccchhHHHHHHHcCC
Q 026114           50 WLIVGLGNPGIKYHGTRHNVGFEMIDHIAQAQRIAMNTIQSKALIGIGSIGEVPILLAKPQAYMNFSGESVGPLAAHYQV  129 (243)
Q Consensus        50 ~LIVGLGNPG~~Y~~TRHNvGf~vld~La~~~~~~~~~~~~~~~~~~~~i~~~~v~L~KP~TyMN~SG~aV~~i~~~~ki  129 (243)
                      .||+|+|||-..    -==+|..++++|.+.+.-       .           .+.++.-.|    .|.-.-.+++.+  
T Consensus         1 ~lVlGiGN~l~~----DDG~G~~v~~~L~~~~~~-------~-----------~v~v~d~gt----~~~~~~~~~~~~--   52 (146)
T TIGR00142         1 LVLLCVGNELMG----DDGAGPYLAEKCAAAPKE-------E-----------NWVVINAGT----VPENFTVAIREL--   52 (146)
T ss_pred             CEEEEeCccccc----cCcHHHHHHHHHHhccCC-------C-----------CEEEEECCC----ChHHHHHHHHhc--
Confidence            379999999743    234999999999865321       0           022222222    122222233322  


Q ss_pred             CCccEEEEecC--CCCCceEEEccC-----C-CCCCCCcHHHHHHhhcCCCCccEEEE-cccCCCCCCccccccccCCCH
Q 026114          130 PLRHILIYDEM--SLMNGVLRLQPK-----G-GHGHHNGLKSVMNHLDGCREFPRLCI-GIGNPPGKMDMKAYLLQKFSP  200 (243)
Q Consensus       130 ~~~~ilIhDDl--dl~~G~irlk~~-----G-s~gGHNGLKSIi~~L~gt~~f~RLrI-GIGrP~~~~~v~~yVLs~Fs~  200 (243)
                      .++.+||-|-+  +.++|.++....     . .+-+..|+..+++.+.+ .--.++.| ||- |.   ++ +|- ..+|+
T Consensus        53 ~~d~viivDA~~~g~~PG~v~~~~~~~~~~~~~s~H~~~l~~ll~~~~~-~~~~~~~ligi~-~~---~~-~~g-~~LS~  125 (146)
T TIGR00142        53 RPTHILIVDATDMGLNPGEVRIIDDDIIEMYSMSTHNMPLSYLVDYLKE-DINGEIIFLGIQ-PD---IV-GFY-YPMSQ  125 (146)
T ss_pred             CCCEEEEEECcccCCCCCeEEEEChhhccccccCcCcCCHHHHHHHHHh-cCCCeEEEEEEe-ee---ee-ecC-CCCCH
Confidence            25777788865  569999887331     1 24444599999888742 22245555 543 32   22 333 46666


Q ss_pred             HHHHHHHHHHHHHHHHHHHHH
Q 026114          201 IEREQIDAALEQGVEAVRTLV  221 (243)
Q Consensus       201 ~E~~~l~~~l~~a~~al~~li  221 (243)
                      +=++.++    ++++.+..++
T Consensus       126 ~v~~a~~----~~~~~i~~~i  142 (146)
T TIGR00142       126 PVKDAVE----TLYQRLIGWE  142 (146)
T ss_pred             HHHHHHH----HHHHHHHHHH
Confidence            6555554    4444454444

Hydrogenase maturation protease is a protease that is involved in the C-terminal processing of HycE,the large subunit of hydrogenase 3 from E.Coli. This protein seems to be found in E.Coli and in Archaea.

>cd06070 H2MP_like-2 Putative [NiFe] hydrogenase-specific C-terminal protease

Probab=88.51  E-value=12  Score=30.50  Aligned_cols=84  Identities=20%  Similarity=0.237  Sum_probs=50.6

Q ss_pred             EEEeecCCCCCcCcccchHHHHHHHHHHHHcCCCccccccceEEEEEEECCeeEEEEeCCCcccccchhHHHHHHHcCCC
Q 026114           51 LIVGLGNPGIKYHGTRHNVGFEMIDHIAQAQRIAMNTIQSKALIGIGSIGEVPILLAKPQAYMNFSGESVGPLAAHYQVP  130 (243)
Q Consensus        51 LIVGLGNPG~~Y~~TRHNvGf~vld~La~~~~~~~~~~~~~~~~~~~~i~~~~v~L~KP~TyMN~SG~aV~~i~~~~ki~  130 (243)
                      ||+|+|||-..    -==+|+.+++.|++ .++                     -++.-       |...-.++..+. .
T Consensus         1 lVlGiGN~l~~----DDg~G~~v~~~L~~-~~v---------------------~vi~~-------g~~~~~ll~~i~-~   46 (140)
T cd06070           1 LIIGVGNRLYG----DDGFGSCLAEALEQ-CGA---------------------PVFDG-------GLDGFGLLSHLE-N   46 (140)
T ss_pred             CEEEECchhcc----cCcHHHHHHHHHhh-CCC---------------------EEEEC-------CCcHHHHHHHHc-C
Confidence            68999998632    23499999999986 111                     11111       112223344432 4


Q ss_pred             CccEEEEecCC--CCCceEEEccC---------CC-CCCCCcHHHHHHhh
Q 026114          131 LRHILIYDEMS--LMNGVLRLQPK---------GG-HGHHNGLKSVMNHL  168 (243)
Q Consensus       131 ~~~ilIhDDld--l~~G~irlk~~---------Gs-~gGHNGLKSIi~~L  168 (243)
                      .+.+||.|=++  .++|.+++...         .+ +.++-|+..+++-+
T Consensus        47 ~d~viiVDA~~~~~~pG~~~~~~~~~~~~~~~~~~~s~H~~~l~~~l~~~   96 (140)
T cd06070          47 YDIVIFIDVAVIDEDVGVFKITPEPASVAEQISFETDAHRLGPAHLLLLL   96 (140)
T ss_pred             CCEEEEEEeecCCCCCeEEEEecCchhccccccCCCCCCcCCHHHHHHHH
Confidence            56777777654  68898888543         12 34444999997766

Sequence comparison shows similarity to hydrogenase specific C-terminal endopeptidases, also called Hydrogen Maturation Proteases (H2MP). Maturation of [FeNi] hydrogenases includes formation of the nickel metallocenter, proteolytic processing and assembly with other subunits. Hydrogenase maturation endopeptidases are responsible for the proteolytic processing, liberating a short C-terminal peptide by cleaving after a His or an Arg residue, e.g., HycI (E. coli) is involved in processing of HypE (the large subunit of hydrogenases 3). This cleavage is nickel dependent.

>COG0680 HyaD Ni,Fe-hydrogenase maturation factor [Energy production and conversion]

Probab=86.37  E-value=20  Score=30.56  Aligned_cols=140  Identities=21%  Similarity=0.284  Sum_probs=83.0

Q ss_pred             cCeEEEeecCCCCCcCcccchHHHHHHHHHHHHcCCCccccccceEEEEEEECCeeEEEEeC-CCcccccchhHHHHHHH
Q 026114           48 TPWLIVGLGNPGIKYHGTRHNVGFEMIDHIAQAQRIAMNTIQSKALIGIGSIGEVPILLAKP-QAYMNFSGESVGPLAAH  126 (243)
Q Consensus        48 ~~~LIVGLGNPG~~Y~~TRHNvGf~vld~La~~~~~~~~~~~~~~~~~~~~i~~~~v~L~KP-~TyMN~SG~aV~~i~~~  126 (243)
                      |+++|+|+|||=.    .-==+|-.+++.|.+.+--..                 .+-++.- +--+|+.+.     +  
T Consensus         2 ~~ilIlG~GN~L~----~DDG~Gv~vae~L~~~~~~~~-----------------~v~vid~Gt~~~~l~~~-----l--   53 (160)
T COG0680           2 MRILILGVGNILM----GDDGFGVRVAEKLKKRYKPPE-----------------NVEVIDGGTAGPNLLGL-----L--   53 (160)
T ss_pred             CeEEEEeeCCccc----ccCcccHHHHHHHHHhcCCCC-----------------CeEEEEcCCCcHHHHHH-----h--
Confidence            4689999999853    334589999999988763211                 0111111 111232221     1  


Q ss_pred             cCCCCccEEEEecCC--CCCceEEEccC------CCC----CCCCcHHHHHHhhcCCCCccEEEEcccCCCCCCcccccc
Q 026114          127 YQVPLRHILIYDEMS--LMNGVLRLQPK------GGH----GHHNGLKSVMNHLDGCREFPRLCIGIGNPPGKMDMKAYL  194 (243)
Q Consensus       127 ~ki~~~~ilIhDDld--l~~G~irlk~~------Gs~----gGHNGLKSIi~~L~gt~~f~RLrIGIGrP~~~~~v~~yV  194 (243)
                        ...+.+||.|=++  ..+|++++-+.      ..+    .+-.++..++..+.-..++...-+|+.-++.  ...+ +
T Consensus        54 --~~~d~vIIVDav~~g~epG~v~~i~~e~i~~~~~~~~~s~H~~~~~~~L~~~~~~~~~~~~~~~~~v~~~--~~~~-~  128 (160)
T COG0680          54 --AGYDPVIIVDAVLFGLEPGEVRIIDPEEIPAYSSASKDSAHELPLSELLALLKELGGLPVLILGVQVPIV--SLPE-F  128 (160)
T ss_pred             --cCCCcEEEEEeeecCCCCceEEEechhhcccccccCCCccccCCHHHHHHHHHHhcCCceEEEEEeecee--cccc-c
Confidence              1234466888555  45999987322      233    3445788888888544556788888885542  1111 3


Q ss_pred             ccCCCHHHHHHHHHHHHHHHHHHHHH
Q 026114          195 LQKFSPIEREQIDAALEQGVEAVRTL  220 (243)
Q Consensus       195 Ls~Fs~~E~~~l~~~l~~a~~al~~l  220 (243)
                      -..+|++=++.++.+++++.+.++.+
T Consensus       129 ~~~lS~ev~~a~~~av~~i~~~l~~~  154 (160)
T COG0680         129 GGGLSPEVEEAVDKAVERILEELREW  154 (160)
T ss_pred             ccccCHHHHHHHHHHHHHHHHHHHhh
Confidence            35667776667777777666665544

>PRK10264 hydrogenase 1 maturation protease; Provisional

Probab=84.70  E-value=27  Score=30.62  Aligned_cols=138  Identities=20%  Similarity=0.312  Sum_probs=79.2

Q ss_pred             cCeEEEeecCCCCCcCcccchHHHHHHHHHHHHcCCCccccccceEEEEEEECCeeEEEEeCCCcccccchhHHHHHHHc
Q 026114           48 TPWLIVGLGNPGIKYHGTRHNVGFEMIDHIAQAQRIAMNTIQSKALIGIGSIGEVPILLAKPQAYMNFSGESVGPLAAHY  127 (243)
Q Consensus        48 ~~~LIVGLGNPG~~Y~~TRHNvGf~vld~La~~~~~~~~~~~~~~~~~~~~i~~~~v~L~KP~TyMN~SG~aV~~i~~~~  127 (243)
                      ++.+|+|+|||=..    -==+|..+++.|++.+..+..                 +.++--.|    .|.   .++...
T Consensus         4 ~rilVlGiGN~L~g----DDGvG~~va~~L~~~~~~~~~-----------------V~vid~Gt----~g~---~ll~~i   55 (195)
T PRK10264          4 QRVVVMGLGNLLWA----DEGFGVRVAERLYAHYHWPEY-----------------VEIVDGGT----QGL---NLLGYV   55 (195)
T ss_pred             CCEEEEEeCccccc----cCcHHHHHHHHHHhhcCCCCC-----------------eEEEECCC----CHH---HHHHHH
Confidence            45799999998422    224999999999877543210                 11111111    122   333333


Q ss_pred             CCCCccEEEEecC--CCCCceEEEccC----------CCCCCCCcHHHHHHh--hcCCCCcc-EEE-EcccCCCCCCccc
Q 026114          128 QVPLRHILIYDEM--SLMNGVLRLQPK----------GGHGHHNGLKSVMNH--LDGCREFP-RLC-IGIGNPPGKMDMK  191 (243)
Q Consensus       128 ki~~~~ilIhDDl--dl~~G~irlk~~----------Gs~gGHNGLKSIi~~--L~gt~~f~-RLr-IGIGrP~~~~~v~  191 (243)
                      . ..+.+||-|=+  +.++|.++.-..          +-+-++-|+..+++.  +.+  +.+ ++. |||= |..   +.
T Consensus        56 ~-~~d~vIiVDAv~~g~~PGtv~~~~~~~~~~~~~~~~~S~H~~~l~~~L~l~~l~g--~~P~~v~iiGie-p~~---~~  128 (195)
T PRK10264         56 E-SASHLLILDAIDYGLEPGTLRTYAGERIPAYLSAKKMSLHQNSFSEVLALADIRG--HLPAHIALVGLQ-PAM---LD  128 (195)
T ss_pred             c-CCCEEEEEECCccCCCCCeEEEEehhhcccccccCCcCcccCCHHHHHHHHHHcC--CCCCeEEEEEEE-EeE---ec
Confidence            2 35677788854  558999887321          113455799999863  322  344 566 4764 321   11


Q ss_pred             cccccCCCHHHHHHHHHHHHHHHHHHHHHH
Q 026114          192 AYLLQKFSPIEREQIDAALEQGVEAVRTLV  221 (243)
Q Consensus       192 ~yVLs~Fs~~E~~~l~~~l~~a~~al~~li  221 (243)
                       ..=-.+|++=++.++++++.+.+.++.|.
T Consensus       129 -~~g~~LSp~V~~av~~~v~~i~~~l~~~~  157 (195)
T PRK10264        129 -DYGGSLSELAREQLPAAEQAALAQLAAWG  157 (195)
T ss_pred             -CCCCCCCHHHHHHHHHHHHHHHHHHHHcC
Confidence             12246777777777777777776666554

>TIGR00072 hydrog_prot hydrogenase maturation protease

Probab=84.02  E-value=22  Score=29.07  Aligned_cols=126  Identities=20%  Similarity=0.322  Sum_probs=67.4

Q ss_pred             EEEeecCCCCCcCcccchHHHHHHHHHHHHcCCCccccccceEEEEEEECCeeEEEEeCCCcccccchhHHHHHHHcCCC
Q 026114           51 LIVGLGNPGIKYHGTRHNVGFEMIDHIAQAQRIAMNTIQSKALIGIGSIGEVPILLAKPQAYMNFSGESVGPLAAHYQVP  130 (243)
Q Consensus        51 LIVGLGNPG~~Y~~TRHNvGf~vld~La~~~~~~~~~~~~~~~~~~~~i~~~~v~L~KP~TyMN~SG~aV~~i~~~~ki~  130 (243)
                      ||+|+|||-..    -==+|..+++.|++.+....      .           +-++.-.|    .|.   .++..+. .
T Consensus         1 lViGiGN~l~~----DDg~G~~v~~~L~~~~~~~~------~-----------v~~id~g~----~~~---~l~~~l~-~   51 (145)
T TIGR00072         1 LVLGIGNILRG----DDGFGPRVAERLEERYEFPP------G-----------VEVLDGGT----LGL---ELLDAIE-G   51 (145)
T ss_pred             CEEEECchhcc----cCcHHHHHHHHHHHhcCCCC------C-----------eEEEECCC----CHH---HHHHHHh-C
Confidence            69999999532    23599999999988753210      0           11111100    122   2333332 3


Q ss_pred             CccEEEEecC--CCCCceEEEcc-C--------CCCCCCCcHHHHHHhhcCCCCcc-EEEE-cccCCCCCCccccccccC
Q 026114          131 LRHILIYDEM--SLMNGVLRLQP-K--------GGHGHHNGLKSVMNHLDGCREFP-RLCI-GIGNPPGKMDMKAYLLQK  197 (243)
Q Consensus       131 ~~~ilIhDDl--dl~~G~irlk~-~--------Gs~gGHNGLKSIi~~L~gt~~f~-RLrI-GIGrP~~~~~v~~yVLs~  197 (243)
                      .+.+||-|=.  +.++|.++.-. .        ..+.++-|+..+++.+.-....+ ++.| ||= |.   ++ +| =..
T Consensus        52 ~d~viiVDA~~~g~~pG~v~~~~~~~~~~~~~~~~s~H~~~l~~~l~~~~~~g~~p~~~~lvgi~-~~---~~-~~-g~~  125 (145)
T TIGR00072        52 ADRVIVVDAVDSGAEPGTVRRLPGEDLPAFLGGKLSTHQLGLSEVLALLELLGALPPEVVLLGIQ-PE---SL-EF-GLG  125 (145)
T ss_pred             CCEEEEEEccCCCcCCceEEEEchhhccccccCCCCcCcCCHHHHHHHHHHcCCCCCeEEEEEEE-ee---ec-cc-CCC
Confidence            5677777865  55899988621 1        22455569999988773222344 4444 543 21   12 22 135


Q ss_pred             CCHHHHHHHHHHHH
Q 026114          198 FSPIEREQIDAALE  211 (243)
Q Consensus       198 Fs~~E~~~l~~~l~  211 (243)
                      +|++=++.++++++
T Consensus       126 LS~~v~~~~~~~~~  139 (145)
T TIGR00072       126 LSPEVAAAVPAAVE  139 (145)
T ss_pred             CCHHHHHHHHHHHH
Confidence            56654444444433

HycI and HoxM are well-characterized as responsible for C-terminal protease activity on their respective hydrogenase large chains. A large number of homologous proteins appear responsible for the maturation of various forms of hydrogenase.

>cd06062 H2MP_MemB-H2up Endopeptidases belonging to membrane-bound hydrogenases group

Probab=83.28  E-value=24  Score=28.94  Aligned_cols=129  Identities=18%  Similarity=0.258  Sum_probs=69.4

Q ss_pred             eEEEeecCCCCCcCcccchHHHHHHHHHHHHcCCCccccccceEEEEEEECCeeEEEEeCCCcccccchhHHHHHHHcCC
Q 026114           50 WLIVGLGNPGIKYHGTRHNVGFEMIDHIAQAQRIAMNTIQSKALIGIGSIGEVPILLAKPQAYMNFSGESVGPLAAHYQV  129 (243)
Q Consensus        50 ~LIVGLGNPG~~Y~~TRHNvGf~vld~La~~~~~~~~~~~~~~~~~~~~i~~~~v~L~KP~TyMN~SG~aV~~i~~~~ki  129 (243)
                      .+|+|+|||-..    -==+|+.+++.|++.++....                 +.++.       .|...-.++..+. 
T Consensus         1 ilV~GiGN~l~g----DDG~G~~va~~L~~~~~~~~~-----------------v~vi~-------~~~~~~~l~~~l~-   51 (146)
T cd06062           1 ILVLGIGNILLA----DEGIGVHAVERLEENYSFPEN-----------------VELID-------GGTLGLELLPYIE-   51 (146)
T ss_pred             CEEEEECccccc----cCcHHHHHHHHHHHhcCCCCC-----------------eEEEE-------CCCCHHHHHHHHh-
Confidence            379999999632    235999999999887543211                 11111       1111122333322 


Q ss_pred             CCccEEEEec--CCCCCceEEEc-cC--------CCCCCCCcHHHHHHhhcCC-CCccEEEE-cccCCCCCCcccccccc
Q 026114          130 PLRHILIYDE--MSLMNGVLRLQ-PK--------GGHGHHNGLKSVMNHLDGC-REFPRLCI-GIGNPPGKMDMKAYLLQ  196 (243)
Q Consensus       130 ~~~~ilIhDD--ldl~~G~irlk-~~--------Gs~gGHNGLKSIi~~L~gt-~~f~RLrI-GIGrP~~~~~v~~yVLs  196 (243)
                      ..+.+||.|=  .+.++|+++.- ..        ..+.++-|+..+++.+.-. ..-+++.| ||= |.   ++ +| =.
T Consensus        52 ~~d~viiVDA~~~g~~pG~i~~~~~~~~~~~~~~~~s~H~~~l~~~l~~~~~~~~~~~~v~ivgie-~~---~~-~~-g~  125 (146)
T cd06062          52 EADRLIIVDAVDAGGPPGTVYRFEGEDVPAFLSAKLSAHQVGLLEVLALAELLGDLPPEIVLIGVQ-PE---SI-EW-GL  125 (146)
T ss_pred             cCCEEEEEEcccCCCCCCeEEEEechhccccccCCcCcccCCHHHHHHHHHHcCCCCCeEEEEEEE-Ee---ec-cC-CC
Confidence            2366668886  46799998763 21        2355677788888765211 11234444 443 21   22 12 23


Q ss_pred             CCCHHHHHHHHHHHHHH
Q 026114          197 KFSPIEREQIDAALEQG  213 (243)
Q Consensus       197 ~Fs~~E~~~l~~~l~~a  213 (243)
                      .+|++=++.++++++.+
T Consensus       126 ~LS~~v~~av~~~~~~i  142 (146)
T cd06062         126 ELSPEVAAALPTAIEAV  142 (146)
T ss_pred             CCCHHHHHHHHHHHHHH
Confidence            66776566665555443

These hydrogenases transfer electrons from H2 to a cytochrome that is bound to a membrane-located complex coupling electron transfer to transmembrane proton translocation. Endopeptidase HybD from E. coli is well studied in this group. Maturation of [NiFe] hydrogenases include proteolytic processing of large subunit, assembly with other subunits, and formation of the nickel metallocenter. Hydrogenase maturation endopeptidase (HybD) cleaves a short C-terminal peptide after a His or an Arg residue in the large subunit (pre-HybC) of hydrogenase 2 (hyb operon) in E. coli. This cleavage is nickel dependent. A variety of endopeptidases belong to this group that are similar in function and sequence homology. They include such proteins as HynC, HoxM, and HupD.

>cd06064 H2MP_F420-Reduc Endopeptidases belonging to F420-reducing hydrogenases group

Probab=82.36  E-value=26  Score=28.80  Aligned_cols=128  Identities=18%  Similarity=0.278  Sum_probs=69.4

Q ss_pred             EEEeecCCCCCcCcccchHHHHHHHHHHHHcCCCccccccceEEEEEEECCeeEEEEeCCCcccccchhH-H---HHHHH
Q 026114           51 LIVGLGNPGIKYHGTRHNVGFEMIDHIAQAQRIAMNTIQSKALIGIGSIGEVPILLAKPQAYMNFSGESV-G---PLAAH  126 (243)
Q Consensus        51 LIVGLGNPG~~Y~~TRHNvGf~vld~La~~~~~~~~~~~~~~~~~~~~i~~~~v~L~KP~TyMN~SG~aV-~---~i~~~  126 (243)
                      ||+|+|||-..    -==+|+.+++.|++....+      .           .+.++.       .|... .   .+...
T Consensus         1 lViGiGN~l~g----DDgvG~~va~~l~~~~~~~------~-----------~v~vid-------~g~~~~~~~~~~~~~   52 (150)
T cd06064           1 LVVGCGNILFG----DDGFGPAVIEELEKLELLP------D-----------NVQVID-------AGTGAPHLLFTLLDE   52 (150)
T ss_pred             CEEEECCcccc----cCcHHHHHHHHHHhccCCC------C-----------CEEEEE-------CCCcHHHHHHHHHhc
Confidence            68999999642    3349999999998764211      0           012222       22211 1   11222


Q ss_pred             cCCCCccEEEEecC--CCCCceEEEccC---------CCCCCCCcHHHHHHhhcCCCCcc-EEEE-cccCCCCCCccccc
Q 026114          127 YQVPLRHILIYDEM--SLMNGVLRLQPK---------GGHGHHNGLKSVMNHLDGCREFP-RLCI-GIGNPPGKMDMKAY  193 (243)
Q Consensus       127 ~ki~~~~ilIhDDl--dl~~G~irlk~~---------Gs~gGHNGLKSIi~~L~gt~~f~-RLrI-GIGrP~~~~~v~~y  193 (243)
                      + -.++.+||-|=+  +.++|.++....         ..+.++-|+..+++.+.+  ..+ ++.| ||- |. ..+..+|
T Consensus        53 ~-~~~d~viivDA~~~g~~pG~v~~~~~~~~~~~~~~~~s~H~~~l~~~l~~~~~--~~~~~~~iigi~-p~-~~~~~~~  127 (150)
T cd06064          53 E-SKPKKIIIVDAIDFGLEPGTLKKISVDELPPGKYYDFDAHSWPLADPLHELKD--KYGIEIVVIGCQ-PK-RVPEPDV  127 (150)
T ss_pred             c-CCCCEEEEEEecCCCCCCCeEEEEehhhcccccCCCcCCCcCCHHHHHHHHHh--cCCCeEEEEEEE-Ee-eecCCCC
Confidence            2 125677788874  779999887321         135678899999987742  232 4443 443 22 1110111


Q ss_pred             cccCCCHHHHHHHHHHHHH
Q 026114          194 LLQKFSPIEREQIDAALEQ  212 (243)
Q Consensus       194 VLs~Fs~~E~~~l~~~l~~  212 (243)
                      = ..+|++=++.++++++.
T Consensus       128 ~-~~LS~~v~~a~~~~~~~  145 (150)
T cd06064         128 E-PGLSEEVEKAVPKAVEI  145 (150)
T ss_pred             C-CCCCHHHHHHHHHHHHH
Confidence            1 35666655555544443

These hydrogenases from methanogens are encoded by the fru, frc, or frh genes. Sequence comparison indicates that fruD and frcD gene products from Methanococcus voltae are similar to HycI protease of Escherichia coli and are putatively involved in the C-terminal processing of large subunits (FruA and FrcA respectively). FrhD (F420 reducing hydrogenase delta subunit) enzyme belongs to the gene cluster of 8-hydroxy-5-deazaflavin (F420) reducing hydrogenase (FRH) from the thermophilic methanogen Methanobacterium thermoautotrophicum delta H. FrhD subunit is putatively involved in the processing of the coenzyme F420 hydrogenase-processing. It is similar to those frhD genes found in Methanomicrobia and Methanobacteria. It is different from the FrhD conserved domain found in methyl viologen-reducing hydrogenase and F420-non-reducing hydrogenase iron-sulfur subunit D.

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	243
1rym_A	212	Structure Of The Group Ii Intron Splicing Factor Cr		1e-84
1ryb_A	205	Crystal Structure Of The Chloroplast Group Ii Intro		5e-82
1ryn_A	202	Structure Of The Chloroplast Group Ii Intron Splici		5e-80
2jrc_A	204	Solution Structure Of Peptidyl-Trna Hydrolase From		2e-28
2lgj_A	191	Solution Structure Of Mspth Length = 191		2e-28
2z2i_A	191	Crystal Structure Of Peptidyl-Trna Hydrolase From M		2e-28
3kjz_A	191	Crystal Structure Of Native Peptidyl-Trna Hydrolase		2e-27
4fop_A	193	Crystal Structure Of Peptidyl-Trna Hydrolase From A		2e-20
3nea_A	207	Crystal Structure Of Peptidyl-Trna Hydrolase From F		4e-18
2pth_A	193	Peptidyl-Trna Hydrolase From Escherichia Coli Lengt		4e-17
3vjr_A	197	Crystal Structure Of Peptidyl-Trna Hydrolase From E		4e-17
3ofv_A	211	Crystal Structure Of Peptidyl-Trna Hydrolase From E		5e-17
3v2i_A	222	Structure Of A Peptidyl-Trna Hydrolase (Pth) From B		1e-16
4dhw_A	194	Crystal Structure Of Peptidyl-Trna Hydrolase From P		5e-16
4fyj_A	199	Crystal Structure Of P. Aeruginosa Peptidyl-Trna Hy		5e-16

>pdb|1RYM|A Chain A, Structure Of The Group Ii Intron Splicing Factor Crs2 Length = 212

Iteration: 1
 Score =  309 bits (791), Expect = 1e-84,   Method: Compositional matrix adjust.
 Identities = 148/200 (74%), Positives = 171/200 (85%), Gaps = 1/200 (0%)
Query: 45  VEYTPWLIVGLGNPGIKYHGTRHNVGFEMIDHIAQAQRIAMNTIQSKALIGIGSIGEVPI 104
           VEYTPWLI GLGNPG KY+GTRHNVGFEM+D IA  + I MNT QSK+L+GIGSIGEVP+
Sbjct: 13  VEYTPWLIAGLGNPGNKYYGTRHNVGFEMVDRIAAEEGITMNTEQSKSLLGIGSIGEVPV 72
Query: 105 LLAKPQAYMNFSGESVGPLAAHYQVPLRHIL-IYDEMSLMNGVLRLQPKGGHGHHNGLKS 163
           L+ KPQ+YMN+SGE++GPLAA+YQVPLRHIL IYD+ SL NGVLRLQ KGGHG HNGL++
Sbjct: 73  LVVKPQSYMNYSGEAIGPLAAYYQVPLRHILLIYDDTSLPNGVLRLQKKGGHGRHNGLQN 132
Query: 164 VMNHLDGCREFPRLCIGIGNPPGKMDMKAYLLQKFSPIEREQIDAALEQGVEAVRTLVLN 223
           V+ HLDG REFPRL IGIG+PPGKMD +A+LLQKFS  ER QID ALEQGV+AVRTLVL 
Sbjct: 133 VIEHLDGRREFPRLSIGIGSPPGKMDPRAFLLQKFSSEERVQIDTALEQGVDAVRTLVLK 192
Query: 224 GFDQNISRFNMGQKYKYHAV 243
           GF  +  RFN+ QKYK+H V
Sbjct: 193 GFSGSTERFNLVQKYKFHRV 212

>pdb|1RYB|A Chain A, Crystal Structure Of The Chloroplast Group Ii Intron Splicing Factor Crs2 Length = 205

Iteration: 1
 Score =  300 bits (767), Expect = 5e-82,   Method: Compositional matrix adjust.
 Identities = 144/193 (74%), Positives = 166/193 (86%), Gaps = 1/193 (0%)
Query: 45  VEYTPWLIVGLGNPGIKYHGTRHNVGFEMIDHIAQAQRIAMNTIQSKALIGIGSIGEVPI 104
           VEYTPWLI GLGNPG KY+GTRHNVGFEM+D IA  + I MNTIQSK+L+GIGSIGEVP+
Sbjct: 13  VEYTPWLIAGLGNPGNKYYGTRHNVGFEMVDRIAAEEGITMNTIQSKSLLGIGSIGEVPV 72
Query: 105 LLAKPQAYMNFSGESVGPLAAHYQVPLRHI-LIYDEMSLMNGVLRLQPKGGHGHHNGLKS 163
           L+ KPQ+YMN+SGE++GPLAA+YQVPLRHI LIYD+ SL NGVLRLQ KGGHG HNGL++
Sbjct: 73  LVVKPQSYMNYSGEAIGPLAAYYQVPLRHILLIYDDTSLPNGVLRLQKKGGHGRHNGLQN 132
Query: 164 VMNHLDGCREFPRLCIGIGNPPGKMDMKAYLLQKFSPIEREQIDAALEQGVEAVRTLVLN 223
           V+ HLDG REFPRL IGIG+PPGKMD +A+LLQKFS  ER QID ALEQGV+AVRTLVL 
Sbjct: 133 VIEHLDGRREFPRLSIGIGSPPGKMDPRAFLLQKFSSEERVQIDTALEQGVDAVRTLVLK 192
Query: 224 GFDQNISRFNMGQ 236
           GF  +  RFN+ Q
Sbjct: 193 GFSGSTERFNLVQ 205

>pdb|1RYN|A Chain A, Structure Of The Chloroplast Group Ii Intron Splicing Factor Crs2 Length = 202

Iteration: 1
 Score =  293 bits (751), Expect = 5e-80,   Method: Compositional matrix adjust.
 Identities = 141/194 (72%), Positives = 164/194 (84%), Gaps = 1/194 (0%)
Query: 45  VEYTPWLIVGLGNPGIKYHGTRHNVGFEMIDHIAQAQRIAMNTIQSKALIGIGSIGEVPI 104
           +EYTPWLI GLGNPG KY+GTRHNVGFEM+D IA  + I MNT Q K+L+G GSIGEVP+
Sbjct: 1   MEYTPWLIAGLGNPGNKYYGTRHNVGFEMVDRIAAEEGITMNTNQFKSLLGTGSIGEVPV 60
Query: 105 LLAKPQAYMNFSGESVGPLAAHYQVPLRHIL-IYDEMSLMNGVLRLQPKGGHGHHNGLKS 163
           L+ KPQ+YMN+SGE++GPLAA+YQVPLRHIL IYD+ SL NGVLRLQ KGGHG HNGL++
Sbjct: 61  LVVKPQSYMNYSGEAIGPLAAYYQVPLRHILLIYDDTSLPNGVLRLQKKGGHGRHNGLQN 120
Query: 164 VMNHLDGCREFPRLCIGIGNPPGKMDMKAYLLQKFSPIEREQIDAALEQGVEAVRTLVLN 223
           V+ HLDG REFPRL IGIG+PPGKMD +A+LLQKFS  ER QID ALEQGV+AVRTLVL 
Sbjct: 121 VIEHLDGRREFPRLSIGIGSPPGKMDPRAFLLQKFSSEERVQIDTALEQGVDAVRTLVLK 180
Query: 224 GFDQNISRFNMGQK 237
           GF  +  RFN+ QK
Sbjct: 181 GFSGSTERFNLVQK 194

>pdb|2JRC|A Chain A, Solution Structure Of Peptidyl-Trna Hydrolase From Mycobacterium Tuberculosis H37rv Length = 204

Iteration: 1
 Score =  122 bits (306), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 76/180 (42%), Positives = 107/180 (59%), Gaps = 3/180 (1%)
Query: 49  PWLIVGLGNPGIKYHGTRHNVGFEMIDHIAQAQRIAMNT-IQSKALIGIGSIGEVPILLA 107
           P L+VGLGNPG  Y  TRHN+GF + D +A           +S A +  G      ++LA
Sbjct: 4   PLLVVGLGNPGANYARTRHNLGFVVADLLAARLGAKFKAHKRSGAEVATGRSAGRSLVLA 63
Query: 108 KPQAYMNFSGESVGPLAAHYQV-PLRHILIYDEMSLMNGVLRLQPKGGHGHHNGLKSVMN 166
           KP+ YMN SG  +GPLA  Y V P   I+I+D++ L  G +RL+  GG G HNGL+SV+ 
Sbjct: 64  KPRCYMNESGRQIGPLAKFYSVAPANIIVIHDDLDLEFGRIRLKIGGGEGGHNGLRSVVA 123
Query: 167 HLDGCREFPRLCIGIGNPPGKMDMKAYLLQKFSPIEREQIDAALEQGVEAVRTLVLNGFD 226
            L G ++F R+ IGIG PPG+ D  A++L+ F+P ER ++    EQ  +A   L+  G +
Sbjct: 124 AL-GTKDFQRVRIGIGRPPGRKDPAAFVLENFTPAERAEVPTICEQAADATELLIEQGME 182

>pdb|2LGJ|A Chain A, Solution Structure Of Mspth Length = 191

Iteration: 1
 Score =  122 bits (306), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 76/180 (42%), Positives = 109/180 (60%), Gaps = 3/180 (1%)
Query: 49  PWLIVGLGNPGIKYHGTRHNVGFEMIDHIAQAQRIAMNT-IQSKALIGIGSIGEVPILLA 107
           P L+VGLGNPG  Y  TRHN+GF + D +A     A     +S A +  G +    ++LA
Sbjct: 4   PLLVVGLGNPGPTYAKTRHNLGFMVADVLAGRIGSAFKVHKKSGAEVVTGRLAGTSVVLA 63
Query: 108 KPQAYMNFSGESVGPLAAHYQVPLRHIL-IYDEMSLMNGVLRLQPKGGHGHHNGLKSVMN 166
           KP+ YMN SG  VGPLA  Y VP + I+ I+DE+ +  G +RL+  GG G HNGL+SV +
Sbjct: 64  KPRCYMNESGRQVGPLAKFYSVPPQQIVVIHDELDIDFGRIRLKLGGGEGGHNGLRSVAS 123
Query: 167 HLDGCREFPRLCIGIGNPPGKMDMKAYLLQKFSPIEREQIDAALEQGVEAVRTLVLNGFD 226
            L G + F R+ IG+G PPG+ D  A++L+ F+  ER ++   +EQ  +A   L+  G +
Sbjct: 124 AL-GTKNFHRVRIGVGRPPGRKDPAAFVLENFTAAERAEVPTIVEQAADATELLIAQGLE 182

>pdb|2Z2I|A Chain A, Crystal Structure Of Peptidyl-Trna Hydrolase From Mycobacterium Tuberculosis Length = 191

Iteration: 1
 Score =  122 bits (306), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 76/180 (42%), Positives = 107/180 (59%), Gaps = 3/180 (1%)
Query: 49  PWLIVGLGNPGIKYHGTRHNVGFEMIDHIAQAQRIAMNT-IQSKALIGIGSIGEVPILLA 107
           P L+VGLGNPG  Y  TRHN+GF + D +A           +S A +  G      ++LA
Sbjct: 4   PLLVVGLGNPGANYARTRHNLGFVVADLLAARLGAKFKAHKRSGAEVATGRSAGRSLVLA 63
Query: 108 KPQAYMNFSGESVGPLAAHYQV-PLRHILIYDEMSLMNGVLRLQPKGGHGHHNGLKSVMN 166
           KP+ YMN SG  +GPLA  Y V P   I+I+D++ L  G +RL+  GG G HNGL+SV+ 
Sbjct: 64  KPRCYMNESGRQIGPLAKFYSVAPANIIVIHDDLDLEFGRIRLKIGGGEGGHNGLRSVVA 123
Query: 167 HLDGCREFPRLCIGIGNPPGKMDMKAYLLQKFSPIEREQIDAALEQGVEAVRTLVLNGFD 226
            L G ++F R+ IGIG PPG+ D  A++L+ F+P ER ++    EQ  +A   L+  G +
Sbjct: 124 AL-GTKDFQRVRIGIGRPPGRKDPAAFVLENFTPAERAEVPTICEQAADATELLIEQGME 182

>pdb|3KJZ|A Chain A, Crystal Structure Of Native Peptidyl-Trna Hydrolase From Mycobacterium Smegmatis Length = 191

Iteration: 1
 Score =  118 bits (296), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 75/180 (41%), Positives = 108/180 (60%), Gaps = 3/180 (1%)
Query: 49  PWLIVGLGNPGIKYHGTRHNVGFEMIDHIAQAQRIAMNT-IQSKALIGIGSIGEVPILLA 107
           P L+VGLGNPG  Y  TRHN+GF + D +A     A     +S A +  G +    ++LA
Sbjct: 4   PLLVVGLGNPGPTYAKTRHNLGFMVADVLAGRIGSAFKVHKKSGAEVVTGRLAGTTVVLA 63
Query: 108 KPQAYMNFSGESVGPLAAHYQVPLRHIL-IYDEMSLMNGVLRLQPKGGHGHHNGLKSVMN 166
           KP+  MN SG  VGPLA  Y VP + I+ I+DE+ +  G +RL+  GG G HNGL+SV +
Sbjct: 64  KPRISMNESGRQVGPLAKFYSVPPQQIVVIHDELDIDFGRIRLKLGGGEGGHNGLRSVAS 123
Query: 167 HLDGCREFPRLCIGIGNPPGKMDMKAYLLQKFSPIEREQIDAALEQGVEAVRTLVLNGFD 226
            L G + F R+ IG+G PPG+ D  A++L+ F+  ER ++   +EQ  +A   L+  G +
Sbjct: 124 AL-GTKNFHRVRIGVGRPPGRKDPAAFVLENFTSAERAEVPTIVEQAADATELLIAQGLE 182

>pdb|4FOP|A Chain A, Crystal Structure Of Peptidyl-Trna Hydrolase From Acinetobacter Baumannii At 1.86 A Resolution Length = 193

Iteration: 1
 Score = 95.9 bits (237), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 71/185 (38%), Positives = 105/185 (56%), Gaps = 4/185 (2%)
Query: 51  LIVGLGNPGIKYHGTRHNVGFEMIDHIAQAQRIAM-NTIQSKALIGIGSIGEVPILLAKP 109
           LIVGLGNPG +Y  TRHN GF  ++ +A    I + N  +   + G G+I    + L  P
Sbjct: 6   LIVGLGNPGSEYAQTRHNAGFWFVEQLADKYGITLKNDPKFHGISGRGNIEGHDVRLLLP 65
Query: 110 QAYMNFSGESVGPLAAHYQVPLRHILI-YDEMSLMNGVLRLQPKGGHGHHNGLKSVMNHL 168
             YMN SG+SV P +  YQ+    ILI +DE+ +  GV+RL+  GGHG HNGL+ ++ H+
Sbjct: 66  MTYMNRSGQSVVPFSKFYQIAPEAILIAHDELDMNPGVIRLKTGGGHGGHNGLRDIVPHI 125
Query: 169 DGCREFPRLCIGIGNPPGKMDMKAYLLQKFSPIEREQIDAALEQGVEAVRTLVLNGFDQN 228
                F RL IGIG+P  K  +  ++L K    E+  +D A++  +  V+ LV     Q 
Sbjct: 126 --GPNFHRLRIGIGHPGSKERVSGHVLGKAPSNEQSLMDGAIDHALSKVKLLVQGQVPQA 183
Query: 229 ISRFN 233
           +++ N
Sbjct: 184 MNQIN 188

>pdb|3NEA|A Chain A, Crystal Structure Of Peptidyl-Trna Hydrolase From Francisella Tularensis Length = 207

Iteration: 1
 Score = 88.2 bits (217), Expect = 4e-18,   Method: Compositional matrix adjust.
 Identities = 65/167 (38%), Positives = 100/167 (59%), Gaps = 5/167 (2%)
Query: 51  LIVGLGNPGIKYHGTRHNVGFEMIDHIAQA--QRIAMNTIQSKALIGIGSIGEVPILLAK 108
           +I+GLGN G +Y  TRHNVG   I  IAQ   Q  + N   +  L  + SI    ++L  
Sbjct: 25  MIIGLGNIGKEYQDTRHNVGEWFIAKIAQDNNQSFSSNPKLNCNLAKV-SIDYNNVVLVF 83
Query: 109 PQAYMNFSGESVGPLAAHYQV-PLRHILIYDEMSLMNGVLRLQPKGGHGHHNGLKSVMNH 167
           P  YMN SG +V  +A  Y++ P   ++++DE+ + +G +RL+  GGHG HNGL+S+  H
Sbjct: 84  PTTYMNNSGLAVSKVANFYKIAPAEILVVHDELDIDSGEIRLKKGGGHGGHNGLRSINQH 143
Query: 168 LDGCREFPRLCIGIGNPPGKMDMKAYLLQKFSPIEREQIDAALEQGV 214
           L G  ++ RL IGIG+P  K  +  Y+L   S  +++ ID+A++ G+
Sbjct: 144 L-GTNDYLRLRIGIGHPGHKSKVANYVLSNPSIAQKKDIDSAIDNGI 189

>pdb|2PTH|A Chain A, Peptidyl-Trna Hydrolase From Escherichia Coli Length = 193

Iteration: 1
 Score = 85.1 bits (209), Expect = 4e-17,   Method: Compositional matrix adjust.
 Identities = 62/186 (33%), Positives = 98/186 (52%), Gaps = 6/186 (3%)
Query: 51  LIVGLGNPGIKYHGTRHNVGFEMIDHIAQAQRIAMNTIQSKALIGIGS---IGEVPILLA 107
           LIVGL NPG +Y  TRHN G   +D +A+  R  +   +     G  S   +G   + L 
Sbjct: 4   LIVGLANPGAEYAATRHNAGAWFVDLLAERLRAPLR--EEAKFFGYTSRVTLGGEDVRLL 61
Query: 108 KPQAYMNFSGESVGPLAAHYQVPLRHILI-YDEMSLMNGVLRLQPKGGHGHHNGLKSVMN 166
            P  +MN SG++V  +A+ +++    IL+ +DE+ L  GV + +  GGHG HNGLK +++
Sbjct: 62  VPTTFMNLSGKAVAAMASFFRINPDEILVAHDELDLPPGVAKFKLGGGHGGHNGLKDIIS 121
Query: 167 HLDGCREFPRLCIGIGNPPGKMDMKAYLLQKFSPIEREQIDAALEQGVEAVRTLVLNGFD 226
            L     F RL IGIG+P  K  +  ++L K    E++ ID A+++          +G  
Sbjct: 122 KLGNNPNFHRLRIGIGHPGDKNKVVGFVLGKPPVSEQKLIDEAIDEAARCTEMWFTDGLT 181
Query: 227 QNISRF 232
           +  +R 
Sbjct: 182 KATNRL 187

>pdb|3VJR|A Chain A, Crystal Structure Of Peptidyl-Trna Hydrolase From Escherichia Coli In Complex With The Cca-Acceptor-T[psi]c Domain Of Trna Length = 197

Iteration: 1
 Score = 84.7 bits (208), Expect = 4e-17,   Method: Compositional matrix adjust.
 Identities = 62/186 (33%), Positives = 98/186 (52%), Gaps = 6/186 (3%)
Query: 51  LIVGLGNPGIKYHGTRHNVGFEMIDHIAQAQRIAMNTIQSKALIGIGS---IGEVPILLA 107
           LIVGL NPG +Y  TRHN G   +D +A+  R  +   +     G  S   +G   + L 
Sbjct: 8   LIVGLANPGAEYAATRHNAGAWFVDLLAERLRAPLR--EEAKFFGYTSRVTLGGEDVRLL 65
Query: 108 KPQAYMNFSGESVGPLAAHYQVPLRHILI-YDEMSLMNGVLRLQPKGGHGHHNGLKSVMN 166
            P  +MN SG++V  +A+ +++    IL+ +DE+ L  GV + +  GGHG HNGLK +++
Sbjct: 66  VPTTFMNLSGKAVAAMASFFRINPDEILVAHDELDLPPGVAKFKLGGGHGGHNGLKDIIS 125
Query: 167 HLDGCREFPRLCIGIGNPPGKMDMKAYLLQKFSPIEREQIDAALEQGVEAVRTLVLNGFD 226
            L     F RL IGIG+P  K  +  ++L K    E++ ID A+++          +G  
Sbjct: 126 KLGNNPNFHRLRIGIGHPGDKNKVVGFVLGKPPVSEQKLIDEAIDEAARCTEMWFTDGLT 185
Query: 227 QNISRF 232
           +  +R 
Sbjct: 186 KATNRL 191

>pdb|3OFV|A Chain A, Crystal Structure Of Peptidyl-Trna Hydrolase From Escherichia Coli, I222 Crystal Form Length = 211

Iteration: 1
 Score = 84.3 bits (207), Expect = 5e-17,   Method: Compositional matrix adjust.
 Identities = 62/186 (33%), Positives = 98/186 (52%), Gaps = 6/186 (3%)
Query: 51  LIVGLGNPGIKYHGTRHNVGFEMIDHIAQAQRIAMNTIQSKALIGIGS---IGEVPILLA 107
           LIVGL NPG +Y  TRHN G   +D +A+  R  +   +     G  S   +G   + L 
Sbjct: 25  LIVGLANPGAEYAATRHNAGAWFVDLLAERLRAPLR--EEAKFFGYTSRVTLGGEDVRLL 82
Query: 108 KPQAYMNFSGESVGPLAAHYQVPLRHILI-YDEMSLMNGVLRLQPKGGHGHHNGLKSVMN 166
            P  +MN SG++V  +A+ +++    IL+ +DE+ L  GV + +  GGHG HNGLK +++
Sbjct: 83  VPTTFMNLSGKAVAAMASFFRINPDEILVAHDELDLPPGVAKFKLGGGHGGHNGLKDIIS 142
Query: 167 HLDGCREFPRLCIGIGNPPGKMDMKAYLLQKFSPIEREQIDAALEQGVEAVRTLVLNGFD 226
            L     F RL IGIG+P  K  +  ++L K    E++ ID A+++          +G  
Sbjct: 143 KLGNNPNFHRLRIGIGHPGDKNKVVGFVLGKPPVSEQKLIDEAIDEAARCTEMWFTDGLT 202
Query: 227 QNISRF 232
           +  +R 
Sbjct: 203 KATNRL 208

>pdb|3V2I|A Chain A, Structure Of A Peptidyl-Trna Hydrolase (Pth) From Burkholderia Thailandensis Length = 222

Iteration: 1
 Score = 83.6 bits (205), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 70/189 (37%), Positives = 105/189 (55%), Gaps = 20/189 (10%)
Query: 51  LIVGLGNPGIKYHGTRHNVGFEMIDHIAQAQRIAMNTIQSK----ALIGIGSIGEVPILL 106
           LIVGLGNPG +Y  TRHN GF ++D +A   R A  T++ +           +    + L
Sbjct: 25  LIVGLGNPGAEYTATRHNAGFWLVDQLA---REAGATLRDERRFHGFYAKARLYGEEVHL 81
Query: 107 AKPQAYMNFSGESVGPLAAHYQVPLRHILI-YDEMSLMNGVLRLQPKGGHGHHNGLKSVM 165
            +PQ YMN SG+SV  LA  +++    IL+ +DE+ L  G ++L+  GG G HNGLK + 
Sbjct: 82  LEPQTYMNRSGQSVVALAHFFKILPNEILVAHDELDLPPGAVKLKLGGGSGGHNGLKDIS 141
Query: 166 NHLDGCREFPRLCIGIGNPP----------GKMDMKAYLLQKFSPIEREQIDAALEQGVE 215
            HL   +++ RL IGIG+P            K D+  ++L+     E++ IDAA+E+ + 
Sbjct: 142 AHL-SSQQYWRLRIGIGHPRDMIPESARAGAKPDVANFVLKPPRKEEQDVIDAAIERAL- 199
Query: 216 AVRTLVLNG 224
           AV   V+ G
Sbjct: 200 AVMPAVVKG 208

>pdb|4DHW|A Chain A, Crystal Structure Of Peptidyl-Trna Hydrolase From Pseudomonas Aeruginosa With Adipic Acid At 2.4 Angstrom Resolution Length = 194

Iteration: 1
 Score = 81.3 bits (199), Expect = 5e-16,   Method: Compositional matrix adjust.
 Identities = 60/163 (36%), Positives = 93/163 (57%), Gaps = 2/163 (1%)
Query: 51  LIVGLGNPGIKYHGTRHNVGFEMIDHIAQAQRIAMNTIQSK-ALIGIGSIGEVPILLAKP 109
           LIVGLGNPG +Y  TRHN G   ++ +A AQ +++   +    L+G  S     + L  P
Sbjct: 6   LIVGLGNPGPEYDQTRHNAGALFVERLAHAQGVSLVADRKYFGLVGKFSHQGKDVRLLIP 65
Query: 110 QAYMNFSGESVGPLAAHYQVPLRHILI-YDEMSLMNGVLRLQPKGGHGHHNGLKSVMNHL 168
             YMN SG+SV  LA  +++    IL+ +DE+ +  GV +L+  GGHG HNGL+ ++  L
Sbjct: 66  TTYMNRSGQSVAALAGFFRIAPDAILVAHDELDMPPGVAKLKTGGGHGGHNGLRDIIAQL 125
Query: 169 DGCREFPRLCIGIGNPPGKMDMKAYLLQKFSPIEREQIDAALE 211
                F RL +GIG+P     +  Y+L +    E+E +D +++
Sbjct: 126 GNQNSFHRLRLGIGHPGHSSLVSGYVLGRAPRSEQELLDTSID 168

>pdb|4FYJ|A Chain A, Crystal Structure Of P. Aeruginosa Peptidyl-Trna Hydrolase Length = 199

Iteration: 1
 Score = 80.9 bits (198), Expect = 5e-16,   Method: Compositional matrix adjust.
 Identities = 60/163 (36%), Positives = 93/163 (57%), Gaps = 2/163 (1%)
Query: 51  LIVGLGNPGIKYHGTRHNVGFEMIDHIAQAQRIAMNTIQSK-ALIGIGSIGEVPILLAKP 109
           LIVGLGNPG +Y  TRHN G   ++ +A AQ +++   +    L+G  S     + L  P
Sbjct: 12  LIVGLGNPGPEYDQTRHNAGALFVERLAHAQGVSLVADRKYFGLVGKFSHQGKDVRLLIP 71
Query: 110 QAYMNFSGESVGPLAAHYQVPLRHILI-YDEMSLMNGVLRLQPKGGHGHHNGLKSVMNHL 168
             YMN SG+SV  LA  +++    IL+ +DE+ +  GV +L+  GGHG HNGL+ ++  L
Sbjct: 72  TTYMNRSGQSVAALAGFFRIAPDAILVAHDELDMPPGVAKLKTGGGHGGHNGLRDIIAQL 131
Query: 169 DGCREFPRLCIGIGNPPGKMDMKAYLLQKFSPIEREQIDAALE 211
                F RL +GIG+P     +  Y+L +    E+E +D +++
Sbjct: 132 GNQNSFHRLRLGIGHPGHSSLVSGYVLGRAPRSEQELLDTSID 174

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	243
1ryb_A	205	CRS2; alpha-beta, hydrolase; 1.70A {Zea mays} SCOP	3e-98
2z2i_A	191	PTH, peptidyl-tRNA hydrolase; protein synthesis; 1	3e-86
4fno_A	194	PTH, peptidyl-tRNA hydrolase; 2.25A {Pseudomonas a	2e-82
2pth_A	193	Peptidyl-tRNA hydrolase; 1.20A {Escherichia coli}	1e-79
3nea_A	207	PTH, peptidyl-tRNA hydrolase; 2.25A {Francisella t	4e-74
4fop_A	193	PTH, peptidyl-tRNA hydrolase; 1.86A {Acinetobacter	5e-73
3v2i_A	222	PTH, peptidyl-tRNA hydrolase; ssgcid, seattle stru	1e-72

>1ryb_A CRS2; alpha-beta, hydrolase; 1.70A {Zea mays} SCOP: c.56.3.1 PDB: 1rym_A 1ryn_A Length = 205

 Score =  284 bits (729), Expect = 3e-98
 Identities = 144/193 (74%), Positives = 166/193 (86%), Gaps = 1/193 (0%)

Query: 45  VEYTPWLIVGLGNPGIKYHGTRHNVGFEMIDHIAQAQRIAMNTIQSKALIGIGSIGEVPI 104
           VEYTPWLI GLGNPG KY+GTRHNVGFEM+D IA  + I MNTIQSK+L+GIGSIGEVP+
Sbjct: 13  VEYTPWLIAGLGNPGNKYYGTRHNVGFEMVDRIAAEEGITMNTIQSKSLLGIGSIGEVPV 72

Query: 105 LLAKPQAYMNFSGESVGPLAAHYQVPLRHIL-IYDEMSLMNGVLRLQPKGGHGHHNGLKS 163
           L+ KPQ+YMN+SGE++GPLAA+YQVPLRHIL IYD+ SL NGVLRLQ KGGHG HNGL++
Sbjct: 73  LVVKPQSYMNYSGEAIGPLAAYYQVPLRHILLIYDDTSLPNGVLRLQKKGGHGRHNGLQN 132

Query: 164 VMNHLDGCREFPRLCIGIGNPPGKMDMKAYLLQKFSPIEREQIDAALEQGVEAVRTLVLN 223
           V+ HLDG REFPRL IGIG+PPGKMD +A+LLQKFS  ER QID ALEQGV+AVRTLVL 
Sbjct: 133 VIEHLDGRREFPRLSIGIGSPPGKMDPRAFLLQKFSSEERVQIDTALEQGVDAVRTLVLK 192

Query: 224 GFDQNISRFNMGQ 236
           GF  +  RFN+ Q
Sbjct: 193 GFSGSTERFNLVQ 205

>2z2i_A PTH, peptidyl-tRNA hydrolase; protein synthesis; 1.98A {Mycobacterium tuberculosis} PDB: 2z2j_A 2z2k_A 3tck_A 3tcn_A 3td2_A 3td6_A 2jrc_A 3p2j_A 3kk0_A 3kjz_A Length = 191

 Score =  253 bits (649), Expect = 3e-86
 Identities = 76/187 (40%), Positives = 110/187 (58%), Gaps = 3/187 (1%)

Query: 49  PWLIVGLGNPGIKYHGTRHNVGFEMIDHIAQAQRIAMNT-IQSKALIGIGSIGEVPILLA 107
           P L+VGLGNPG  Y  TRHN+GF + D +A           +S A +  G      ++LA
Sbjct: 4   PLLVVGLGNPGANYARTRHNLGFVVADLLAARLGAKFKAHKRSGAEVATGRSAGRSLVLA 63

Query: 108 KPQAYMNFSGESVGPLAAHYQVPLRHIL-IYDEMSLMNGVLRLQPKGGHGHHNGLKSVMN 166
           KP+ YMN SG  +GPLA  Y V   +I+ I+D++ L  G +RL+  GG G HNGL+SV+ 
Sbjct: 64  KPRCYMNESGRQIGPLAKFYSVAPANIIVIHDDLDLEFGRIRLKIGGGEGGHNGLRSVVA 123

Query: 167 HLDGCREFPRLCIGIGNPPGKMDMKAYLLQKFSPIEREQIDAALEQGVEAVRTLVLNGFD 226
            L G ++F R+ IGIG PPG+ D  A++L+ F+P ER ++    EQ  +A   L+  G +
Sbjct: 124 AL-GTKDFQRVRIGIGRPPGRKDPAAFVLENFTPAERAEVPTICEQAADATELLIEQGME 182

Query: 227 QNISRFN 233
              +R +
Sbjct: 183 PAQNRVH 189

>4fno_A PTH, peptidyl-tRNA hydrolase; 2.25A {Pseudomonas aeruginosa} PDB: 4djj_A* 4erx_A 4dhw_A Length = 194

 Score =  243 bits (624), Expect = 2e-82
 Identities = 60/187 (32%), Positives = 101/187 (54%), Gaps = 2/187 (1%)

Query: 49  PWLIVGLGNPGIKYHGTRHNVGFEMIDHIAQAQRIAMNT-IQSKALIGIGSIGEVPILLA 107
             LIVGLGNPG +Y  TRHN G   ++ +A AQ +++    +   L+G  S     + L 
Sbjct: 4   VQLIVGLGNPGPEYDQTRHNAGALFVERLAHAQGVSLVADRKYFGLVGKFSHQGKDVRLL 63

Query: 108 KPQAYMNFSGESVGPLAAHYQVPLRHIL-IYDEMSLMNGVLRLQPKGGHGHHNGLKSVMN 166
            P  YMN SG+SV  LA  +++    IL  +DE+ +  GV +L+  GGHG HNGL+ ++ 
Sbjct: 64  IPTTYMNRSGQSVAALAGFFRIAPDAILVAHDELDMPPGVAKLKTGGGHGGHNGLRDIIA 123

Query: 167 HLDGCREFPRLCIGIGNPPGKMDMKAYLLQKFSPIEREQIDAALEQGVEAVRTLVLNGFD 226
            L     F RL +GIG+P     +  Y+L +    E+E +D +++  +  +  ++   + 
Sbjct: 124 QLGNQNSFHRLRLGIGHPGHSSLVSGYVLGRAPRSEQELLDTSIDFALGVLPEMLAGDWT 183

Query: 227 QNISRFN 233
           + + + +
Sbjct: 184 RAMQKLH 190

>2pth_A Peptidyl-tRNA hydrolase; 1.20A {Escherichia coli} SCOP: c.56.3.1 PDB: 3ofv_A Length = 193

 Score =  236 bits (605), Expect = 1e-79
 Identities = 60/186 (32%), Positives = 97/186 (52%), Gaps = 2/186 (1%)

Query: 50  WLIVGLGNPGIKYHGTRHNVGFEMIDHIAQAQRIAMNT-IQSKALIGIGSIGEVPILLAK 108
            LIVGL NPG +Y  TRHN G   +D +A+  R  +    +        ++G   + L  
Sbjct: 3   KLIVGLANPGAEYAATRHNAGAWFVDLLAERLRAPLREEAKFFGYTSRVTLGGEDVRLLV 62

Query: 109 PQAYMNFSGESVGPLAAHYQVPLRHIL-IYDEMSLMNGVLRLQPKGGHGHHNGLKSVMNH 167
           P  +MN SG++V  +A+ +++    IL  +DE+ L  GV + +  GGHG HNGLK +++ 
Sbjct: 63  PTTFMNLSGKAVAAMASFFRINPDEILVAHDELDLPPGVAKFKLGGGHGGHNGLKDIISK 122

Query: 168 LDGCREFPRLCIGIGNPPGKMDMKAYLLQKFSPIEREQIDAALEQGVEAVRTLVLNGFDQ 227
           L     F RL IGIG+P  K  +  ++L K    E++ ID A+++          +G  +
Sbjct: 123 LGNNPNFHRLRIGIGHPGDKNKVVGFVLGKPPVSEQKLIDEAIDEAARCTEMWFTDGLTK 182

Query: 228 NISRFN 233
             +R +
Sbjct: 183 ATNRLH 188

>3nea_A PTH, peptidyl-tRNA hydrolase; 2.25A {Francisella tularensis subsp} Length = 207

 Score =  222 bits (569), Expect = 4e-74
 Identities = 63/186 (33%), Positives = 104/186 (55%), Gaps = 3/186 (1%)

Query: 49  PWLIVGLGNPGIKYHGTRHNVGFEMIDHIAQAQRIAMNT-IQSKALIGIGSIGEVPILLA 107
             +I+GLGN G +Y  TRHNVG   I  IAQ    + ++  +    +   SI    ++L 
Sbjct: 23  IKMIIGLGNIGKEYQDTRHNVGEWFIAKIAQDNNQSFSSNPKLNCNLAKVSIDYNNVVLV 82

Query: 108 KPQAYMNFSGESVGPLAAHYQVPLRHIL-IYDEMSLMNGVLRLQPKGGHGHHNGLKSVMN 166
            P  YMN SG +V  +A  Y++    IL ++DE+ + +G +RL+  GGHG HNGL+S+  
Sbjct: 83  FPTTYMNNSGLAVSKVANFYKIAPAEILVVHDELDIDSGEIRLKKGGGHGGHNGLRSINQ 142

Query: 167 HLDGCREFPRLCIGIGNPPGKMDMKAYLLQKFSPIEREQIDAALEQGVEAVRTLVLNGFD 226
           HL G  ++ RL IGIG+P  K  +  Y+L   S  +++ ID+A++ G+  +  ++    +
Sbjct: 143 HL-GTNDYLRLRIGIGHPGHKSKVANYVLSNPSIAQKKDIDSAIDNGICFLDDIINYKLE 201

Query: 227 QNISRF 232
             + + 
Sbjct: 202 PVMQKL 207

>4fop_A PTH, peptidyl-tRNA hydrolase; 1.86A {Acinetobacter baumannii} Length = 193

 Score =  219 bits (561), Expect = 5e-73
 Identities = 69/186 (37%), Positives = 103/186 (55%), Gaps = 4/186 (2%)

Query: 50  WLIVGLGNPGIKYHGTRHNVGFEMIDHIAQAQRIAMNT-IQSKALIGIGSIGEVPILLAK 108
            LIVGLGNPG +Y  TRHN GF  ++ +A    I +    +   + G G+I    + L  
Sbjct: 5   SLIVGLGNPGSEYAQTRHNAGFWFVEQLADKYGITLKNDPKFHGISGRGNIEGHDVRLLL 64

Query: 109 PQAYMNFSGESVGPLAAHYQVPLRHIL-IYDEMSLMNGVLRLQPKGGHGHHNGLKSVMNH 167
           P  YMN SG+SV P +  YQ+    IL  +DE+ +  GV+RL+  GGHG HNGL+ ++ H
Sbjct: 65  PMTYMNRSGQSVVPFSKFYQIAPEAILIAHDELDMNPGVIRLKTGGGHGGHNGLRDIVPH 124

Query: 168 LDGCREFPRLCIGIGNPPGKMDMKAYLLQKFSPIEREQIDAALEQGVEAVRTLVLNGFDQ 227
           +     F RL IGIG+P  K  +  ++L K    E+  +D A++  +  V+ LV     Q
Sbjct: 125 IG--PNFHRLRIGIGHPGSKERVSGHVLGKAPSNEQSLMDGAIDHALSKVKLLVQGQVPQ 182

Query: 228 NISRFN 233
            +++ N
Sbjct: 183 AMNQIN 188

>3v2i_A PTH, peptidyl-tRNA hydrolase; ssgcid, seattle structural genomics center for infectious DI RNA; HET: CIT; 1.65A {Burkholderia thailandensis E264} Length = 222

 Score =  219 bits (561), Expect = 1e-72
 Identities = 64/196 (32%), Positives = 104/196 (53%), Gaps = 13/196 (6%)

Query: 50  WLIVGLGNPGIKYHGTRHNVGFEMIDHIAQAQRIAMNT-IQSKALIGIGSIGEVPILLAK 108
            LIVGLGNPG +Y  TRHN GF ++D +A+     +    +         +    + L +
Sbjct: 24  KLIVGLGNPGAEYTATRHNAGFWLVDQLAREAGATLRDERRFHGFYAKARLYGEEVHLLE 83

Query: 109 PQAYMNFSGESVGPLAAHYQVPLRHIL-IYDEMSLMNGVLRLQPKGGHGHHNGLKSVMNH 167
           PQ YMN SG+SV  LA  +++    IL  +DE+ L  G ++L+  GG G HNGLK +  H
Sbjct: 84  PQTYMNRSGQSVVALAHFFKILPNEILVAHDELDLPPGAVKLKLGGGSGGHNGLKDISAH 143

Query: 168 LDGCREFPRLCIGIGNPP----------GKMDMKAYLLQKFSPIEREQIDAALEQGVEAV 217
           L   +++ RL IGIG+P            K D+  ++L+     E++ IDAA+E+ +  +
Sbjct: 144 L-SSQQYWRLRIGIGHPRDMIPESARAGAKPDVANFVLKPPRKEEQDVIDAAIERALAVM 202

Query: 218 RTLVLNGFDQNISRFN 233
             +V    ++ + + +
Sbjct: 203 PAVVKGETERAMMQLH 218

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	243
2pth_A	193	Peptidyl-tRNA hydrolase; 1.20A {Escherichia coli}	100.0
1ryb_A	205	CRS2; alpha-beta, hydrolase; 1.70A {Zea mays} SCOP	100.0
2z2i_A	191	PTH, peptidyl-tRNA hydrolase; protein synthesis; 1	100.0
4fyj_A	199	PTH, peptidyl-tRNA hydrolase; 1.77A {Pseudomonas a	100.0
3v2i_A	222	PTH, peptidyl-tRNA hydrolase; ssgcid, seattle stru	100.0
4hoy_A	193	PTH, peptidyl-tRNA hydrolase; enzyme, molecular co	100.0
3nea_A	207	PTH, peptidyl-tRNA hydrolase; 2.25A {Francisella t	100.0
4fno_A	194	PTH, peptidyl-tRNA hydrolase; 2.25A {Pseudomonas a	100.0
1cfz_A	162	Hydrogenase 2 maturation protease; metzincins, nic	93.72

>2pth_A Peptidyl-tRNA hydrolase; 1.20A {Escherichia coli} SCOP: c.56.3.1 PDB: 3ofv_A

Probab=100.00  E-value=2.2e-75  Score=505.50  Aligned_cols=188  Identities=32%  Similarity=0.538  Sum_probs=178.9

Q ss_pred             CeEEEeecCCCCCcCcccchHHHHHHHHHHHHcCCCcc-ccccceEEEEEEECCeeEEEEeCCCcccccchhHHHHHHHc
Q 026114           49 PWLIVGLGNPGIKYHGTRHNVGFEMIDHIAQAQRIAMN-TIQSKALIGIGSIGEVPILLAKPQAYMNFSGESVGPLAAHY  127 (243)
Q Consensus        49 ~~LIVGLGNPG~~Y~~TRHNvGf~vld~La~~~~~~~~-~~~~~~~~~~~~i~~~~v~L~KP~TyMN~SG~aV~~i~~~~  127 (243)
                      ++|||||||||++|++|||||||+++|.||+++++++. ..++++.++++.+++++++|+||+||||+||++|+++++||
T Consensus         2 m~LIvGLGNPG~~Y~~TRHNiGf~viD~La~~~~~~~~~~~k~~~~~~~~~~~g~~v~L~KP~TyMNlSG~sV~~~~~~y   81 (193)
T 2pth_A            2 IKLIVGLANPGAEYAATRHNAGAWFVDLLAERLRAPLREEAKFFGYTSRVTLGGEDVRLLVPTTFMNLSGKAVAAMASFF   81 (193)
T ss_dssp             CCEEEECCCCSTTTTTSGGGHHHHHHHHHHHHHTCCCEEEGGGTEEEEEEEETTEEEEEEEECSCGGGTHHHHHHHHHHH
T ss_pred             cEEEEEECCCCcccccCchHHHHHHHHHHHHHcCCCccccccccEEEEEEEECCeEEEEEcCCchHhcCcHHHHHHHHHh
Confidence            58999999999999999999999999999999999887 55688999999999999999999999999999999999999


Q ss_pred             CCCCccEE-EEecCCCCCceEEEccCCCCCCCCcHHHHHHhhcCCCCccEEEEcccCCCCCCccccccccCCCHHHHHHH
Q 026114          128 QVPLRHIL-IYDEMSLMNGVLRLQPKGGHGHHNGLKSVMNHLDGCREFPRLCIGIGNPPGKMDMKAYLLQKFSPIEREQI  206 (243)
Q Consensus       128 ki~~~~il-IhDDldl~~G~irlk~~Gs~gGHNGLKSIi~~L~gt~~f~RLrIGIGrP~~~~~v~~yVLs~Fs~~E~~~l  206 (243)
                      ++++++|| ||||||||+|++|+|.+||+|||||||||+++|++|++|+|||||||||..+.++++|||++|+++|++.|
T Consensus        82 ki~~~~ilVihDdldlp~G~irlk~gGs~gGHNGlkSI~~~Lg~t~~f~RlRiGIGrP~~~~~v~~yVL~~f~~~E~~~l  161 (193)
T 2pth_A           82 RINPDEILVAHDELDLPPGVAKFKLGGGHGGHNGLKDIISKLGNNPNFHRLRIGIGHPGDKNKVVGFVLGKPPVSEQKLI  161 (193)
T ss_dssp             TCCGGGEEEEEEETTSCTTCEEEEESCCCTTCHHHHHHHHHTTSCCCSEEEEEECCCCSSHHHHHHHHTSCCCHHHHHHH
T ss_pred             CCCHHHEEEEecccCCCCceEEEecCCCCCCCCCHHHHHHHhCCCCCeEEEEEEeCCCCCCCchhHHhhCCCCHHHHHHH
Confidence            99999999 99999999999999999999999999999999942799999999999996545799999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHhCHHHHHHhhhCCC
Q 026114          207 DAALEQGVEAVRTLVLNGFDQNISRFNMGQ  236 (243)
Q Consensus       207 ~~~l~~a~~al~~li~~g~~~~mn~~n~~~  236 (243)
                      ++++++|++|++.|+.++++++||+||..+
T Consensus       162 ~~~i~~a~~a~~~~~~~~~~~amn~~n~~~  191 (193)
T 2pth_A          162 DEAIDEAARCTEMWFTDGLTKATNRLHAFK  191 (193)
T ss_dssp             HHHHHHHHHHHHHHHHHCHHHHHHHHHHTT
T ss_pred             HHHHHHHHHHHHHHHHCCHHHHHHHHhCcc
Confidence            999999999999999999999999999854

>1ryb_A CRS2; alpha-beta, hydrolase; 1.70A {Zea mays} SCOP: c.56.3.1 PDB: 1rym_A 1ryn_A

Probab=100.00  E-value=2.6e-75  Score=508.95  Aligned_cols=192  Identities=75%  Similarity=1.221  Sum_probs=177.1

Q ss_pred             ccccCeEEEeecCCCCCcCcccchHHHHHHHHHHHHcCCCccccccceEEEEEEECCeeEEEEeCCCcccccchhHHHHH
Q 026114           45 VEYTPWLIVGLGNPGIKYHGTRHNVGFEMIDHIAQAQRIAMNTIQSKALIGIGSIGEVPILLAKPQAYMNFSGESVGPLA  124 (243)
Q Consensus        45 ~~~~~~LIVGLGNPG~~Y~~TRHNvGf~vld~La~~~~~~~~~~~~~~~~~~~~i~~~~v~L~KP~TyMN~SG~aV~~i~  124 (243)
                      +++.+||||||||||++|++|||||||+++|.||+++++++.+.++++.++++.+++++|+|+||+||||+||++|++++
T Consensus        13 ~~~~~~LIVGLGNPG~~Y~~TRHNiGf~viD~La~~~~~~~~~~k~~~~~~~~~~~g~~v~LlKP~TyMNlSG~sV~~~~   92 (205)
T 1ryb_A           13 VEYTPWLIAGLGNPGNKYYGTRHNVGFEMVDRIAAEEGITMNTIQSKSLLGIGSIGEVPVLVVKPQSYMNYSGEAIGPLA   92 (205)
T ss_dssp             --CCCEEEEECCCCSGGGTTBGGGHHHHHHHHHHHHTTCCCCEEETTEEEEEEEETTEEEEEEEECSCGGGHHHHHHHHH
T ss_pred             CCCCCEEEEEECCCChhhccCchHHHHHHHHHHHHHcCCCcccccccEEEEEEEECCEEEEEEcCCchhhccCHHHHHHH
Confidence            55668999999999999999999999999999999999998877889999999999999999999999999999999999


Q ss_pred             HHcCCCCccEE-EEecCCCCCceEEEccCCCCCCCCcHHHHHHhhcCCCCccEEEEcccCCCCCCccccccccCCCHHHH
Q 026114          125 AHYQVPLRHIL-IYDEMSLMNGVLRLQPKGGHGHHNGLKSVMNHLDGCREFPRLCIGIGNPPGKMDMKAYLLQKFSPIER  203 (243)
Q Consensus       125 ~~~ki~~~~il-IhDDldl~~G~irlk~~Gs~gGHNGLKSIi~~L~gt~~f~RLrIGIGrP~~~~~v~~yVLs~Fs~~E~  203 (243)
                      +||++++++|| ||||||||+|++|+|.+||+|||||||||+++|.||++|+|||||||||+.+.++++|||++|+++|+
T Consensus        93 ~~yki~~~~ilVihDdLdLp~G~iRlk~gGs~gGHNGLkSI~~~L~gt~~f~RlRiGIGrP~~~~~v~~yVL~~f~~~E~  172 (205)
T 1ryb_A           93 AYYQVPLRHILLIYDDTSLPNGVLRLQKKGGHGRHNGLQNVIEHLDGRREFPRLSIGIGSPPGKMDPRAFLLQKFSSEER  172 (205)
T ss_dssp             HHTTCCGGGEEEEEEETTSCTTCEEEESSCCCTTCHHHHHHHHHTTTCCCSCEEEEECCCCSTTCCHHHHHTSBCCHHHH
T ss_pred             HHhCCCHHHEEEEeecccCCCCeEEEeeCCCCCCCCCHHHHHHHhcCCCCeEEEEEecCCCCCCCchhhhhcCCCCHHHH
Confidence            99999999999 99999999999999999999999999999999933799999999999997656799999999999999


Q ss_pred             HHHHHHHHHHHHHHHHHHHhCHHHHHHhhhCCC
Q 026114          204 EQIDAALEQGVEAVRTLVLNGFDQNISRFNMGQ  236 (243)
Q Consensus       204 ~~l~~~l~~a~~al~~li~~g~~~~mn~~n~~~  236 (243)
                      +.|++++++|++|++.|+.++++++||+||..|
T Consensus       173 ~~l~~~i~~a~~a~~~~~~~~~~~amn~~n~~~  205 (205)
T 1ryb_A          173 VQIDTALEQGVDAVRTLVLKGFSGSTERFNLVQ  205 (205)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHC-----CCCCCCC
T ss_pred             HHHHHHHHHHHHHHHHHHHCCHHHHHHHHhcCC
Confidence            999999999999999999999999999999764

>2z2i_A PTH, peptidyl-tRNA hydrolase; protein synthesis; 1.98A {Mycobacterium tuberculosis} PDB: 2z2j_A 2z2k_A 3tck_A 3tcn_A 3td2_A 3td6_A 2jrc_A 3p2j_A 3kk0_A 3kjz_A

Probab=100.00  E-value=4.2e-75  Score=503.06  Aligned_cols=185  Identities=41%  Similarity=0.732  Sum_probs=167.2

Q ss_pred             CeEEEeecCCCCCcCcccchHHHHHHHHHHHHcCCCccc-cccceEEEEEEECCeeEEEEeCCCcccccchhHHHHHHHc
Q 026114           49 PWLIVGLGNPGIKYHGTRHNVGFEMIDHIAQAQRIAMNT-IQSKALIGIGSIGEVPILLAKPQAYMNFSGESVGPLAAHY  127 (243)
Q Consensus        49 ~~LIVGLGNPG~~Y~~TRHNvGf~vld~La~~~~~~~~~-~~~~~~~~~~~i~~~~v~L~KP~TyMN~SG~aV~~i~~~~  127 (243)
                      ++|||||||||++|++|||||||+++|.||+++++++.+ .++++.++++.+++++++|+||+||||+||++|+++++||
T Consensus         4 m~LIvGLGNPG~~Y~~TRHNiGf~viD~La~~~~~~~~~~~k~~~~~~~~~~~g~~v~L~KP~TyMNlSG~aV~~~~~~y   83 (191)
T 2z2i_A            4 PLLVVGLGNPGANYARTRHNLGFVVADLLAARLGAKFKAHKRSGAEVATGRSAGRSLVLAKPRCYMNESGRQIGPLAKFY   83 (191)
T ss_dssp             CEEEEECCCCSHHHHTBGGGHHHHHHHHHHHHTTCCCEECTTTSSEEEEEEETTEEEEEEECSSCGGGTHHHHHHHHHHT
T ss_pred             cEEEEEECCCCchhccCchHHHHHHHHHHHHHcCCCccccccccEEEEEEEECCeEEEEEcCCchhhcccHHHHHHHHHh
Confidence            589999999999999999999999999999999998865 4588999999999999999999999999999999999999


Q ss_pred             CCCCccEE-EEecCCCCCceEEEccCCCCCCCCcHHHHHHhhcCCCCccEEEEcccCCCCCCccccccccCCCHHHHHHH
Q 026114          128 QVPLRHIL-IYDEMSLMNGVLRLQPKGGHGHHNGLKSVMNHLDGCREFPRLCIGIGNPPGKMDMKAYLLQKFSPIEREQI  206 (243)
Q Consensus       128 ki~~~~il-IhDDldl~~G~irlk~~Gs~gGHNGLKSIi~~L~gt~~f~RLrIGIGrP~~~~~v~~yVLs~Fs~~E~~~l  206 (243)
                      ++++++|| ||||||||+|++|+|.+||+|||||||||+++| ||++|+|||||||||+.+.++++|||++|+++|++.|
T Consensus        84 ki~~~~ilVihDdldlp~G~irlk~gGs~gGHNGlkSI~~~L-gt~~f~RlRiGIGrP~~~~~v~~yVL~~f~~~E~~~l  162 (191)
T 2z2i_A           84 SVAPANIIVIHDDLDLEFGRIRLKIGGGEGGHNGLRSVVAAL-GTKDFQRVRIGIGRPPGRKDPAAFVLENFTPAERAEV  162 (191)
T ss_dssp             TCCGGGEEEEEEETTSCTTCEEEEESCCCTTCHHHHHHHHHH-TCSCSEEEEEECCCCCTTSCHHHHHTSBCCHHHHTTH
T ss_pred             CCCHHHEEEEecccCCCCceEEEecCCCCCCcCCHHHHHHHh-CCCCeEEEEEeeCCCCCCCchhhHhcCCCCHHHHHHH
Confidence            99999999 999999999999999999999999999999999 5899999999999996556799999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHhCHHHHHHhhhC
Q 026114          207 DAALEQGVEAVRTLVLNGFDQNISRFNM  234 (243)
Q Consensus       207 ~~~l~~a~~al~~li~~g~~~~mn~~n~  234 (243)
                      ++++++|++|++.|+.++++++||+||.
T Consensus       163 ~~~i~~a~~a~~~~~~~~~~~amn~~n~  190 (191)
T 2z2i_A          163 PTICEQAADATELLIEQGMEPAQNRVHA  190 (191)
T ss_dssp             HHHHHHHHHHHHHHHHC-----------
T ss_pred             HHHHHHHHHHHHHHHHCCHHHHHHHHhC
Confidence            9999999999999999999999999995

>4fyj_A PTH, peptidyl-tRNA hydrolase; 1.77A {Pseudomonas aeruginosa} PDB: 4fno_A 4djj_A* 4erx_A 4dhw_A

Probab=100.00  E-value=2.4e-74  Score=500.99  Aligned_cols=185  Identities=33%  Similarity=0.579  Sum_probs=178.1

Q ss_pred             eEEEeecCCCCCcCcccchHHHHHHHHHHHHcCCCccc-cccceEEEEEEECCeeEEEEeCCCcccccchhHHHHHHHcC
Q 026114           50 WLIVGLGNPGIKYHGTRHNVGFEMIDHIAQAQRIAMNT-IQSKALIGIGSIGEVPILLAKPQAYMNFSGESVGPLAAHYQ  128 (243)
Q Consensus        50 ~LIVGLGNPG~~Y~~TRHNvGf~vld~La~~~~~~~~~-~~~~~~~~~~~i~~~~v~L~KP~TyMN~SG~aV~~i~~~~k  128 (243)
                      -|||||||||++|++|||||||+++|.||+++++++.+ .++++.++++.+++++++|+||+||||+||++|+++++||+
T Consensus        11 ~lIvGLGNPG~~Y~~TRHNvGf~vlD~La~~~~~~~~~~~k~~~~~~~~~~~g~~v~LlKP~TyMNlSG~aV~~~~~~yk   90 (199)
T 4fyj_A           11 QLIVGLGNPGPEYDQTRHNAGALFVERLAHAQGVSLVADRKYFGLVGKFSHQGKDVRLLIPTTYMNRSGQSVAALAGFFR   90 (199)
T ss_dssp             CEEEECCCCSGGGTTCGGGHHHHHHHHHHHHTTCCCEEEGGGTEEEEEEEETTEEEEEEEECSCGGGHHHHHHHHHHHTT
T ss_pred             eEEEEeCCCchhhCcCchHHHHHHHHHHHHHcCCCcccccccceEEEEEEECCeEEEEEeCCcchhCChHHHHHHHHHhC
Confidence            49999999999999999999999999999999998764 46789999999999999999999999999999999999999


Q ss_pred             CCCccEE-EEecCCCCCceEEEccCCCCCCCCcHHHHHHhhcCCC-CccEEEEcccCCCCCCccccccccCCCHHHHHHH
Q 026114          129 VPLRHIL-IYDEMSLMNGVLRLQPKGGHGHHNGLKSVMNHLDGCR-EFPRLCIGIGNPPGKMDMKAYLLQKFSPIEREQI  206 (243)
Q Consensus       129 i~~~~il-IhDDldl~~G~irlk~~Gs~gGHNGLKSIi~~L~gt~-~f~RLrIGIGrP~~~~~v~~yVLs~Fs~~E~~~l  206 (243)
                      +++++|| ||||||||+|++|+|++||++||||||||+++| ||+ +|+|||||||||+.++++++|||++|+++|++.|
T Consensus        91 i~~~~ilVihDdldLp~G~irlk~gGs~gGHNGLkSI~~~L-gt~~~f~RlRiGIGrP~~~~~v~~yVL~~f~~~E~~~l  169 (199)
T 4fyj_A           91 IAPDAILVAHDELDMPPGVAKLKTGGGHGGHNGLRDIIAQL-GNQNSFHRLRLGIGHPGHSSLVSGYVLGRAPRSEQELL  169 (199)
T ss_dssp             CCGGGEEEEEEETTSCTTCEEEEESCCCTTCHHHHHHHHHH-CSSSCCEEEEEECCCCSSGGGHHHHHTSCCCHHHHHHH
T ss_pred             CCHHHEEEEEecCCCCCceEEEecCCCCCCCCCHHHHHHHh-CCccceEEEEEEeCCCCCCCchhhhhccCCCHHHHHHH
Confidence            9999999 999999999999999999999999999999999 577 9999999999998888999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHhCHHHHHHhhhCC
Q 026114          207 DAALEQGVEAVRTLVLNGFDQNISRFNMG  235 (243)
Q Consensus       207 ~~~l~~a~~al~~li~~g~~~~mn~~n~~  235 (243)
                      ++++++|++|++.|++++++++||+||+.
T Consensus       170 ~~~i~~a~~a~~~~~~~~~~~amn~~n~~  198 (199)
T 4fyj_A          170 DTSIDFALGVLPEMLAGDWTRAMQKLHSQ  198 (199)
T ss_dssp             HHHHHHHHHTHHHHHHTCHHHHHHHHTTC
T ss_pred             HHHHHHHHHHHHHHHHCCHHHHHHHHhCC
Confidence            99999999999999999999999999975

>3v2i_A PTH, peptidyl-tRNA hydrolase; ssgcid, seattle structural genomics center for infectious DI RNA; HET: CIT; 1.65A {Burkholderia thailandensis E264}

Probab=100.00  E-value=7e-74  Score=504.97  Aligned_cols=188  Identities=34%  Similarity=0.558  Sum_probs=174.5

Q ss_pred             cCeEEEeecCCCCCcCcccchHHHHHHHHHHHHcCCCcccc-ccceEEEEEEECCeeEEEEeCCCcccccchhHHHHHHH
Q 026114           48 TPWLIVGLGNPGIKYHGTRHNVGFEMIDHIAQAQRIAMNTI-QSKALIGIGSIGEVPILLAKPQAYMNFSGESVGPLAAH  126 (243)
Q Consensus        48 ~~~LIVGLGNPG~~Y~~TRHNvGf~vld~La~~~~~~~~~~-~~~~~~~~~~i~~~~v~L~KP~TyMN~SG~aV~~i~~~  126 (243)
                      |+||||||||||++|++|||||||+++|.||+++++++.+. ++++.++++.+++++|+|+||+||||+||++|+++++|
T Consensus        22 ~~~LIVGLGNPG~~Y~~TRHNiGf~vvD~La~~~~~~~~~~~kf~~~~~~~~~~g~~v~LlKP~TyMNlSG~aV~~~~~~  101 (222)
T 3v2i_A           22 MIKLIVGLGNPGAEYTATRHNAGFWLVDQLAREAGATLRDERRFHGFYAKARLYGEEVHLLEPQTYMNRSGQSVVALAHF  101 (222)
T ss_dssp             CCCEEEECCCCSGGGTTSGGGHHHHHHHHHHHHHTCCCEEEGGGTEEEEEEEETTEEEEEEEECSCGGGHHHHHHHHHHH
T ss_pred             eEEEEEEeCCCchhhCcCchHHHHHHHHHHHHHcCCCcccccccceEEEEEEECCeEEEEEeCCcchhcccHHHHHHHHH
Confidence            56899999999999999999999999999999999988764 57899999999999999999999999999999999999


Q ss_pred             cCCCCccEE-EEecCCCCCceEEEccCCCCCCCCcHHHHHHhhcCCCCccEEEEcccCC----------CCCCccccccc
Q 026114          127 YQVPLRHIL-IYDEMSLMNGVLRLQPKGGHGHHNGLKSVMNHLDGCREFPRLCIGIGNP----------PGKMDMKAYLL  195 (243)
Q Consensus       127 ~ki~~~~il-IhDDldl~~G~irlk~~Gs~gGHNGLKSIi~~L~gt~~f~RLrIGIGrP----------~~~~~v~~yVL  195 (243)
                      |++++++|| ||||||||+|++|+|.+||++||||||||+++| ||++|+|||||||||          +.+.++++|||
T Consensus       102 yki~~e~ilVihDdLDLp~G~iRlk~gGs~gGHNGLKSI~~~L-gt~~f~RlRIGIGrP~~~~p~~~~~~~~~~v~~yVL  180 (222)
T 3v2i_A          102 FKILPNEILVAHDELDLPPGAVKLKLGGGSGGHNGLKDISAHL-SSQQYWRLRIGIGHPRDMIPESARAGAKPDVANFVL  180 (222)
T ss_dssp             HTCCGGGEEEEEEETTSCTTCEEEEECCCCTTCHHHHHHHHHH-TCCCSEEEEEECCCTTTTCC---------CHHHHTT
T ss_pred             hCCCHHHEEEEEecCCCCCceEEEeCCCCCCCCCCHHHHHHHh-CCCCeEEEEEEcCCCcccccccccCCCCCcHHHHhc
Confidence            999999999 999999999999999999999999999999999 589999999999999          55678999999


Q ss_pred             cCCCHHHHHHHHHHHHHHHHHHHHHHHhCHHHHHHhhhCCC
Q 026114          196 QKFSPIEREQIDAALEQGVEAVRTLVLNGFDQNISRFNMGQ  236 (243)
Q Consensus       196 s~Fs~~E~~~l~~~l~~a~~al~~li~~g~~~~mn~~n~~~  236 (243)
                      ++|+++|++.|++++++|+++++.|++++++++||+||+..
T Consensus       181 ~~fs~~E~~~l~~~i~~a~~av~~~~~~~~~~amn~~n~~~  221 (222)
T 3v2i_A          181 KPPRKEEQDVIDAAIERALAVMPAVVKGETERAMMQLHRNG  221 (222)
T ss_dssp             SCCCHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHC----
T ss_pred             cCCCHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHhCCC
Confidence            99999999999999999999999999999999999999753

>4hoy_A PTH, peptidyl-tRNA hydrolase; enzyme, molecular conformation, INH hydrolase; 1.78A {Acinetobacter baumannii} PDB: 4fot_A 4fop_A

Probab=100.00  E-value=9.7e-74  Score=495.23  Aligned_cols=186  Identities=38%  Similarity=0.624  Sum_probs=178.6

Q ss_pred             CeEEEeecCCCCCcCcccchHHHHHHHHHHHHcCCCccc-cccceEEEEEEECCeeEEEEeCCCcccccchhHHHHHHHc
Q 026114           49 PWLIVGLGNPGIKYHGTRHNVGFEMIDHIAQAQRIAMNT-IQSKALIGIGSIGEVPILLAKPQAYMNFSGESVGPLAAHY  127 (243)
Q Consensus        49 ~~LIVGLGNPG~~Y~~TRHNvGf~vld~La~~~~~~~~~-~~~~~~~~~~~i~~~~v~L~KP~TyMN~SG~aV~~i~~~~  127 (243)
                      .+|||||||||++|++|||||||+++|.||+++++++.. .++.+.++++.+++++++|+||+||||+||++|++++++|
T Consensus         4 ikLIVGLGNPG~~Y~~TRHNiGf~~ld~La~~~~~~~~~~~k~~~~~~~~~~~~~~v~l~kP~TyMN~SG~aV~~~~~~~   83 (193)
T 4hoy_A            4 ISLIVGLGNPGSEYAQTRHNAGFWFVEQLADKYGITLKNDPKFHGISGRGNIEGHDVRLLLPMTYMNRSGQSVVPFSKFY   83 (193)
T ss_dssp             CCEEEECCCCSTTTTTBGGGHHHHHHHHHHHHTTCCCEEEGGGTEEEEEEEETTEEEEEEEECSCGGGTHHHHHHHHHHT
T ss_pred             ceEEEEcCCCchhhCcCcccHHHHHHHHHHHHcCCCccccccccEEEEEEEECCEEEEEEeCCCccccchhhHHHHHHHc
Confidence            469999999999999999999999999999999998755 4678999999999999999999999999999999999999


Q ss_pred             CCCCccEE-EEecCCCCCceEEEccCCCCCCCCcHHHHHHhhcCCCCccEEEEcccCCCCCCccccccccCCCHHHHHHH
Q 026114          128 QVPLRHIL-IYDEMSLMNGVLRLQPKGGHGHHNGLKSVMNHLDGCREFPRLCIGIGNPPGKMDMKAYLLQKFSPIEREQI  206 (243)
Q Consensus       128 ki~~~~il-IhDDldl~~G~irlk~~Gs~gGHNGLKSIi~~L~gt~~f~RLrIGIGrP~~~~~v~~yVLs~Fs~~E~~~l  206 (243)
                      ++++++|| ||||||||+|++|+|++||+|||||||||+++| |+ +|+|||||||||+.++++++|||++|+++|++.|
T Consensus        84 ki~~~~ilVihDdldL~~G~irlk~~G~~gGHNGlkSI~~~l-gt-df~RlRiGIGrP~~~~~v~~yVL~~f~~~E~~~l  161 (193)
T 4hoy_A           84 QIAPEAILIAHDELDMNPGVIRLKTGGGHGGHNGLRDIVPHI-GP-NFHRLRIGIGHPGSKERVSGHVLGKAPSNEQSLM  161 (193)
T ss_dssp             TCCGGGEEEEEEETTSCTTCEEEEESCCCTTCHHHHTTHHHH-CS-CSEEEEEECCCCSSGGGHHHHHTSBCCHHHHHHH
T ss_pred             CCCchheEEeeeccccccCceeeccCCCCCCcCCccchhhHh-cc-ccceEEEeeCCCCCCCCcccccCCCCCHHHHHHH
Confidence            99999999 999999999999999999999999999999999 45 7999999999999888999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHhCHHHHHHhhhCCC
Q 026114          207 DAALEQGVEAVRTLVLNGFDQNISRFNMGQ  236 (243)
Q Consensus       207 ~~~l~~a~~al~~li~~g~~~~mn~~n~~~  236 (243)
                      +++++.|+++++.|++++++++||+||+++
T Consensus       162 ~~~i~~a~~~i~~~~~~~~~~amn~~n~~k  191 (193)
T 4hoy_A          162 DGAIDHALSKVKLLVQGQVPQAMNQINAYK  191 (193)
T ss_dssp             HHHHHHHHHTHHHHHTTCHHHHHHHHHTCC
T ss_pred             HHHHHHHHHHHHHHHHCCHHHHHHHHhCCC
Confidence            999999999999999999999999999875

>3nea_A PTH, peptidyl-tRNA hydrolase; 2.25A {Francisella tularensis subsp}

Probab=100.00  E-value=5.8e-74  Score=500.97  Aligned_cols=183  Identities=34%  Similarity=0.577  Sum_probs=176.9

Q ss_pred             CeEEEeecCCCCCcCcccchHHHHHHHHHHHHcCCCcccc-ccceEEEEEEECCeeEEEEeCCCcccccchhHHHHHHHc
Q 026114           49 PWLIVGLGNPGIKYHGTRHNVGFEMIDHIAQAQRIAMNTI-QSKALIGIGSIGEVPILLAKPQAYMNFSGESVGPLAAHY  127 (243)
Q Consensus        49 ~~LIVGLGNPG~~Y~~TRHNvGf~vld~La~~~~~~~~~~-~~~~~~~~~~i~~~~v~L~KP~TyMN~SG~aV~~i~~~~  127 (243)
                      +||||||||||++|++|||||||+++|.||++++++|.+. ++++.++++.+++++++|+||+||||+||++|+++++||
T Consensus        23 ~~LIVGLGNPG~~Y~~TRHNvGf~vvD~La~~~~~~~~~~~k~~~~~~~~~~~g~~v~LlKP~TyMNlSG~aV~~~~~~y  102 (207)
T 3nea_A           23 IKMIIGLGNIGKEYQDTRHNVGEWFIAKIAQDNNQSFSSNPKLNCNLAKVSIDYNNVVLVFPTTYMNNSGLAVSKVANFY  102 (207)
T ss_dssp             CCEEEECCCCSTTTTTSGGGHHHHHHHHHHHHTTCCCEEEGGGTEEEEEEEETTEEEEEEEESSCGGGHHHHHHHHHHHH
T ss_pred             cEEEEEeCCCchhhCcCchHHHHHHHHHHHHHcCCCccccccccEEEEEEEECCeEEEEEeCCcchhCCcHHHHHHHHHh
Confidence            6899999999999999999999999999999999998765 688999999999999999999999999999999999999


Q ss_pred             CCCCccEE-EEecCCCCCceEEEccCCCCCCCCcHHHHHHhhcCCCCccEEEEcccCCCCCCccccccccCCCHHHHHHH
Q 026114          128 QVPLRHIL-IYDEMSLMNGVLRLQPKGGHGHHNGLKSVMNHLDGCREFPRLCIGIGNPPGKMDMKAYLLQKFSPIEREQI  206 (243)
Q Consensus       128 ki~~~~il-IhDDldl~~G~irlk~~Gs~gGHNGLKSIi~~L~gt~~f~RLrIGIGrP~~~~~v~~yVLs~Fs~~E~~~l  206 (243)
                      ++++++|| ||||||||+|++|+|++||++||||||||+++| ||++|+|||||||||+.+.++++|||++|+++|++.|
T Consensus       103 ki~~e~ilVihDdLDLp~G~iRlk~gGs~gGHNGLkSIi~~L-gt~~f~RlRiGIGrP~~~~~v~~yVL~~fs~~E~~~l  181 (207)
T 3nea_A          103 KIAPAEILVVHDELDIDSGEIRLKKGGGHGGHNGLRSINQHL-GTNDYLRLRIGIGHPGHKSKVANYVLSNPSIAQKKDI  181 (207)
T ss_dssp             TCCGGGEEEEEEETTSCTTCEEEEESCCCTTCHHHHHHHHHH-TCCCSEEEEEECCCCSSGGGHHHHHTSCCCHHHHHHH
T ss_pred             CCCHHHEEEEEEcCCCCCceEEEecCCCCCCCCCHHHHHHHh-CCCCeeEEEEEeCCCCCCCchHHHhccCCCHHHHHHH
Confidence            99999999 999999999999999999999999999999999 5899999999999998878999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHhCHHHHHHhh
Q 026114          207 DAALEQGVEAVRTLVLNGFDQNISRF  232 (243)
Q Consensus       207 ~~~l~~a~~al~~li~~g~~~~mn~~  232 (243)
                      ++++++|++|++.|++++++++||++
T Consensus       182 ~~~i~~a~~a~~~~~~~~~~~amn~~  207 (207)
T 3nea_A          182 DSAIDNGICFLDDIINYKLEPVMQKL  207 (207)
T ss_dssp             HHHHHHHHHTHHHHHTTCCCSCSTTC
T ss_pred             HHHHHHHHHHHHHHHHCCHHHHHhcC
Confidence            99999999999999999999999874

>4fno_A PTH, peptidyl-tRNA hydrolase; 2.25A {Pseudomonas aeruginosa} PDB: 4djj_A* 4erx_A 4dhw_A

Probab=100.00  E-value=1.4e-75  Score=507.05  Aligned_cols=188  Identities=32%  Similarity=0.567  Sum_probs=177.9

Q ss_pred             cCeEEEeecCCCCCcCcccchHHHHHHHHHHHHcCCCcc-ccccceEEEEEEECCeeEEEEeCCCcccccchhHHHHHHH
Q 026114           48 TPWLIVGLGNPGIKYHGTRHNVGFEMIDHIAQAQRIAMN-TIQSKALIGIGSIGEVPILLAKPQAYMNFSGESVGPLAAH  126 (243)
Q Consensus        48 ~~~LIVGLGNPG~~Y~~TRHNvGf~vld~La~~~~~~~~-~~~~~~~~~~~~i~~~~v~L~KP~TyMN~SG~aV~~i~~~  126 (243)
                      |++|||||||||++|++|||||||+++|.||+++++++. ..++++.++++.+++++|+|+||+||||+||++|+++++|
T Consensus         3 mm~LIvGLGNPG~~Y~~TRHNiGf~viD~La~~~~~~~~~~~k~~~~~~~~~~~g~~v~LlKP~TyMNlSG~aV~~~~~f   82 (194)
T 4fno_A            3 AVQLIVGLGNPGPEYDQTRHNAGALFVERLAHAQGVSLVADRKYFGLVGKFSHQGKDVRLLIPTTYMNRSGQSVAALAGF   82 (194)
Confidence            468999999999999999999999999999999998876 3467889998889999999999999999999999999999


Q ss_pred             cCCCCccEE-EEecCCCCCceEEEccCCCCCCCCcHHHHHHhhcCC-CCccEEEEcccCCCCCCccccccccCCCHHHHH
Q 026114          127 YQVPLRHIL-IYDEMSLMNGVLRLQPKGGHGHHNGLKSVMNHLDGC-REFPRLCIGIGNPPGKMDMKAYLLQKFSPIERE  204 (243)
Q Consensus       127 ~ki~~~~il-IhDDldl~~G~irlk~~Gs~gGHNGLKSIi~~L~gt-~~f~RLrIGIGrP~~~~~v~~yVLs~Fs~~E~~  204 (243)
                      |++++++|| ||||||||+|++|+|.+||+|||||||||+++| || ++|+|||||||||..+.++++|||++|+++|++
T Consensus        83 yki~~~~ilVihDdldLp~G~irlk~gGs~gGHNGLkSI~~~L-gt~~~f~RlRiGIGrP~~~~~v~~yVL~~f~~~E~~  161 (194)
T 4fno_A           83 FRIAPDAILVAHDELDMPPGVAKLKTGGGHGGHNGLRDIIAQL-GNQNSFHRLRLGIGHPGHSSLVSGYVLGRAPRSEQE  161 (194)
Confidence            999999999 999999999999999999999999999999999 58 899999999999964567999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHHHhCHHHHHHhhhCCC
Q 026114          205 QIDAALEQGVEAVRTLVLNGFDQNISRFNMGQ  236 (243)
Q Consensus       205 ~l~~~l~~a~~al~~li~~g~~~~mn~~n~~~  236 (243)
                      .|++++++|++|++.|+.++++++||+||..+
T Consensus       162 ~l~~~i~~a~~a~~~~~~~~~~~amn~~n~~k  193 (194)
T 4fno_A          162 LLDTSIDFALGVLPEMLAGDWTRAMQKLHSQK  193 (194)
Confidence            99999999999999999999999999999743

>1cfz_A Hydrogenase 2 maturation protease; metzincins, nickel; 2.20A {Escherichia coli} SCOP: c.56.1.1 PDB: 2kml_A

Probab=93.72  E-value=0.41  Score=39.11  Aligned_cols=133  Identities=23%  Similarity=0.332  Sum_probs=73.6

Q ss_pred             cCeEEEeecCCCCCcCcccchHHHHHHHHHHHHcCCCccccccceEEEEEEECCeeEEEEeCCCcccccchhHHHHHHHc
Q 026114           48 TPWLIVGLGNPGIKYHGTRHNVGFEMIDHIAQAQRIAMNTIQSKALIGIGSIGEVPILLAKPQAYMNFSGESVGPLAAHY  127 (243)
Q Consensus        48 ~~~LIVGLGNPG~~Y~~TRHNvGf~vld~La~~~~~~~~~~~~~~~~~~~~i~~~~v~L~KP~TyMN~SG~aV~~i~~~~  127 (243)
                      |+.+|+|+|||-.    .-==+|..++++|++++..+..                 +.++--.|    .|..+-..+.. 
T Consensus         1 m~ilVlGiGN~l~----gDDG~G~~v~~~L~~~~~~p~~-----------------v~vid~gt----~~~~l~~~l~~-   54 (162)
T 1cfz_A            1 MRILVLGVGNILL----TDEAIGVRIVEALEQRYILPDY-----------------VEILDGGT----AGMELLGDMAN-   54 (162)
T ss_dssp             CCEEEEEESCTTB----GGGGHHHHHHHHHHHHEECCTT-----------------EEEEEEET----CCGGGHHHHSS-
T ss_pred             CCEEEEEECCccc----ccccHHHHHHHHHHhhCCCCCC-----------------eEEEECCC----CHHHHHHHHhC-
Confidence            4679999999843    2235999999999987643211                 11111101    22222222221 


Q ss_pred             CCCCccEEEEe---cCCCCCceEEEccC---------CCCCCCCcHHHHHHhhcCCCCcc-EE-EEcccCCCCCCccccc
Q 026114          128 QVPLRHILIYD---EMSLMNGVLRLQPK---------GGHGHHNGLKSVMNHLDGCREFP-RL-CIGIGNPPGKMDMKAY  193 (243)
Q Consensus       128 ki~~~~ilIhD---Dldl~~G~irlk~~---------Gs~gGHNGLKSIi~~L~gt~~f~-RL-rIGIGrP~~~~~v~~y  193 (243)
                         .+.+||.|   +.+.++|+++.-..         .-+.+.-|+..+++.+.-..+++ ++ =||| .|.   ++ ++
T Consensus        55 ---~d~lIiVDA~~~~g~~PGti~~~~~~~l~~~~~~~~s~H~~~l~~~L~~~~~~g~~P~~v~ligi-~p~---~~-~~  126 (162)
T 1cfz_A           55 ---RDHLIIADAIVSKKNAPGTMMILRDEEVPALFTNKISPHQLGLADVLSALRFTGEFPKKLTLVGV-IPE---SL-EP  126 (162)
T ss_dssp             ---CSEEEEEEECCSSCSCTTCEEEEETTHHHHHHCCSSCHHHHHHHHHHHHHHHTTCCCSEEEEEEE-CCS---CC-CS
T ss_pred             ---CCEEEEEEehhhcCCCCCEEEEEchHHcchhccCCcCCCcCCHHHHHHHHHHcCCCCCeEEEEEE-EEe---Ec-CC
Confidence               36677888   66889999886221         22334448888888763223466 43 4577 343   22 33


Q ss_pred             cccCCCHHHHHHHHHHHHHHHH
Q 026114          194 LLQKFSPIEREQIDAALEQGVE  215 (243)
Q Consensus       194 VLs~Fs~~E~~~l~~~l~~a~~  215 (243)
                       -..+|++=++.++++++.+.+
T Consensus       127 -g~~LS~~v~~av~~a~~~i~~  147 (162)
T 1cfz_A          127 -HIGLTPTVEAMIEPALEQVLA  147 (162)
T ss_dssp             -BSSCCHHHHTTHHHHHHHHHH
T ss_pred             -CCCCCHHHHHHHHHHHHHHHH
Confidence             335666655555544444433

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	243
d1ryba_	191	c.56.3.1 (A:) Chloroplast group II intron splicing	3e-60
d2ptha_	193	c.56.3.1 (A:) Peptidyl-tRNA hydrolase {Escherichia	4e-51

>d1ryba_ c.56.3.1 (A:) Chloroplast group II intron splicing factor Crs2 {Maize (Zea mays) [TaxId: 4577]} Length = 191

class: Alpha and beta proteins (a/b)
fold: Phosphorylase/hydrolase-like
superfamily: Peptidyl-tRNA hydrolase-like
family: Peptidyl-tRNA hydrolase-like
domain: Chloroplast group II intron splicing factor Crs2
species: Maize (Zea mays) [TaxId: 4577]

 Score =  186 bits (472), Expect = 3e-60
 Identities = 142/191 (74%), Positives = 164/191 (85%), Gaps = 1/191 (0%)

Query: 47  YTPWLIVGLGNPGIKYHGTRHNVGFEMIDHIAQAQRIAMNTIQSKALIGIGSIGEVPILL 106
           YTPWLI GLGNPG KY+GTRHNVGFEM+D IA  + I MNTIQSK+L+GIGSIGEVP+L+
Sbjct: 1   YTPWLIAGLGNPGNKYYGTRHNVGFEMVDRIAAEEGITMNTIQSKSLLGIGSIGEVPVLV 60

Query: 107 AKPQAYMNFSGESVGPLAAHYQVPLRHI-LIYDEMSLMNGVLRLQPKGGHGHHNGLKSVM 165
            KPQ+YMN+SGE++GPLAA+YQVPLRHI LIYD+ SL NGVLRLQ KGGHG HNGL++V+
Sbjct: 61  VKPQSYMNYSGEAIGPLAAYYQVPLRHILLIYDDTSLPNGVLRLQKKGGHGRHNGLQNVI 120

Query: 166 NHLDGCREFPRLCIGIGNPPGKMDMKAYLLQKFSPIEREQIDAALEQGVEAVRTLVLNGF 225
            HLDG REFPRL IGIG+PPGKMD +A+LLQKFS  ER QID ALEQGV+AVRTLVL GF
Sbjct: 121 EHLDGRREFPRLSIGIGSPPGKMDPRAFLLQKFSSEERVQIDTALEQGVDAVRTLVLKGF 180

Query: 226 DQNISRFNMGQ 236
             +  RFN+ Q
Sbjct: 181 SGSTERFNLVQ 191

>d2ptha_ c.56.3.1 (A:) Peptidyl-tRNA hydrolase {Escherichia coli [TaxId: 562]} Length = 193

class: Alpha and beta proteins (a/b)
fold: Phosphorylase/hydrolase-like
superfamily: Peptidyl-tRNA hydrolase-like
family: Peptidyl-tRNA hydrolase-like
domain: Peptidyl-tRNA hydrolase
species: Escherichia coli [TaxId: 562]

 Score =  162 bits (412), Expect = 4e-51
 Identities = 60/185 (32%), Positives = 98/185 (52%), Gaps = 2/185 (1%)

Query: 51  LIVGLGNPGIKYHGTRHNVGFEMIDHIAQAQRIAMNT-IQSKALIGIGSIGEVPILLAKP 109
           LIVGL NPG +Y  TRHN G   +D +A+  R  +    +        ++G   + L  P
Sbjct: 4   LIVGLANPGAEYAATRHNAGAWFVDLLAERLRAPLREEAKFFGYTSRVTLGGEDVRLLVP 63

Query: 110 QAYMNFSGESVGPLAAHYQVPLRHILI-YDEMSLMNGVLRLQPKGGHGHHNGLKSVMNHL 168
             +MN SG++V  +A+ +++    IL+ +DE+ L  GV + +  GGHG HNGLK +++ L
Sbjct: 64  TTFMNLSGKAVAAMASFFRINPDEILVAHDELDLPPGVAKFKLGGGHGGHNGLKDIISKL 123

Query: 169 DGCREFPRLCIGIGNPPGKMDMKAYLLQKFSPIEREQIDAALEQGVEAVRTLVLNGFDQN 228
                F RL IGIG+P  K  +  ++L K    E++ ID A+++          +G  + 
Sbjct: 124 GNNPNFHRLRIGIGHPGDKNKVVGFVLGKPPVSEQKLIDEAIDEAARCTEMWFTDGLTKA 183

Query: 229 ISRFN 233
            +R +
Sbjct: 184 TNRLH 188

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	243
d1ryba_	191	Chloroplast group II intron splicing factor Crs2 {	100.0
d2ptha_	193	Peptidyl-tRNA hydrolase {Escherichia coli [TaxId:	100.0

>d1ryba_ c.56.3.1 (A:) Chloroplast group II intron splicing factor Crs2 {Maize (Zea mays) [TaxId: 4577]}

class: Alpha and beta proteins (a/b)
fold: Phosphorylase/hydrolase-like
superfamily: Peptidyl-tRNA hydrolase-like
family: Peptidyl-tRNA hydrolase-like
domain: Chloroplast group II intron splicing factor Crs2
species: Maize (Zea mays) [TaxId: 4577]

Probab=100.00  E-value=1.1e-73  Score=492.12  Aligned_cols=190  Identities=75%  Similarity=1.221  Sum_probs=178.7

Q ss_pred             ccCeEEEeecCCCCCcCcccchHHHHHHHHHHHHcCCCccccccceEEEEEEECCeeEEEEeCCCcccccchhHHHHHHH
Q 026114           47 YTPWLIVGLGNPGIKYHGTRHNVGFEMIDHIAQAQRIAMNTIQSKALIGIGSIGEVPILLAKPQAYMNFSGESVGPLAAH  126 (243)
Q Consensus        47 ~~~~LIVGLGNPG~~Y~~TRHNvGf~vld~La~~~~~~~~~~~~~~~~~~~~i~~~~v~L~KP~TyMN~SG~aV~~i~~~  126 (243)
                      |||||||||||||++|++|||||||+++|.||++++++++..++++.++...+++.+++|+||+||||+||++|++++++
T Consensus         1 ~~p~LIvGLGNPG~~Y~~TRHNiG~~~ld~la~~~~~~~~~~k~~~~~~~~~~~~~~v~L~kP~tyMN~SG~av~~~~~~   80 (191)
T d1ryba_           1 YTPWLIAGLGNPGNKYYGTRHNVGFEMVDRIAAEEGITMNTIQSKSLLGIGSIGEVPVLVVKPQSYMNYSGEAIGPLAAY   80 (191)
T ss_dssp             CCCEEEEECCCCSGGGTTBGGGHHHHHHHHHHHHTTCCCCEEETTEEEEEEEETTEEEEEEEECSCGGGHHHHHHHHHHH
T ss_pred             CCceEEEEcCCCCccccCCccHHHHHHHHHHHHHcCCCcccccccceEEEEeccCceEEEEecCcccccccHHHHHHHHh
Confidence            68999999999999999999999999999999999999887788899999999999999999999999999999999999


Q ss_pred             cCCCCccEE-EEecCCCCCceEEEccCCCCCCCCcHHHHHHhhcCCCCccEEEEcccCCCCCCccccccccCCCHHHHHH
Q 026114          127 YQVPLRHIL-IYDEMSLMNGVLRLQPKGGHGHHNGLKSVMNHLDGCREFPRLCIGIGNPPGKMDMKAYLLQKFSPIEREQ  205 (243)
Q Consensus       127 ~ki~~~~il-IhDDldl~~G~irlk~~Gs~gGHNGLKSIi~~L~gt~~f~RLrIGIGrP~~~~~v~~yVLs~Fs~~E~~~  205 (243)
                      |++++++|| ||||||||+|++|+|.+||++||||||||+++|+++++|+|||||||||+.+.++++|||++|+++|++.
T Consensus        81 ~~i~~~~ilVihDDldl~~G~irlk~~Gs~gGHNGlkSIi~~L~gt~~f~RlriGIg~p~~~~~~~~~VL~~f~~~E~~~  160 (191)
T d1ryba_          81 YQVPLRHILLIYDDTSLPNGVLRLQKKGGHGRHNGLQNVIEHLDGRREFPRLSIGIGSPPGKMDPRAFLLQKFSSEERVQ  160 (191)
T ss_dssp             TTCCGGGEEEEEEETTSCTTCEEEESSCCCTTCHHHHHHHHHTTTCCCSCEEEEECCCCSTTCCHHHHHTSBCCHHHHHH
T ss_pred             hccCcceeEEEEcccccccCceeeccCCCCCcCcchhhHHHHhCCchheEEEeecCCCCcccCCcccccCCCCCHHHHHH
Confidence            999999999 9999999999999999999999999999999997678999999999999888899999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHHhCHHHHHHhhhCCC
Q 026114          206 IDAALEQGVEAVRTLVLNGFDQNISRFNMGQ  236 (243)
Q Consensus       206 l~~~l~~a~~al~~li~~g~~~~mn~~n~~~  236 (243)
                      |+.+++.++++++.|+.+|++++||+||..+
T Consensus       161 l~~~~~~~~~~~~~~i~~~~~~~mn~~N~~~  191 (191)
T d1ryba_         161 IDTALEQGVDAVRTLVLKGFSGSTERFNLVQ  191 (191)
T ss_dssp             HHHHHHHHHHHHHHHHHHC-----CCCCCCC
T ss_pred             HHHHHHHHHHHHHHHHHcCHHHHHHHhhCCC
Confidence            9999999999999999999999999999864

>d2ptha_ c.56.3.1 (A:) Peptidyl-tRNA hydrolase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Phosphorylase/hydrolase-like
superfamily: Peptidyl-tRNA hydrolase-like
family: Peptidyl-tRNA hydrolase-like
domain: Peptidyl-tRNA hydrolase
species: Escherichia coli [TaxId: 562]

Probab=100.00  E-value=3.9e-71  Score=476.56  Aligned_cols=189  Identities=32%  Similarity=0.532  Sum_probs=179.2

Q ss_pred             CeEEEeecCCCCCcCcccchHHHHHHHHHHHHcCCCcccc-ccceEEEEEEECCeeEEEEeCCCcccccchhHHHHHHHc
Q 026114           49 PWLIVGLGNPGIKYHGTRHNVGFEMIDHIAQAQRIAMNTI-QSKALIGIGSIGEVPILLAKPQAYMNFSGESVGPLAAHY  127 (243)
Q Consensus        49 ~~LIVGLGNPG~~Y~~TRHNvGf~vld~La~~~~~~~~~~-~~~~~~~~~~i~~~~v~L~KP~TyMN~SG~aV~~i~~~~  127 (243)
                      ++|||||||||++|++|||||||+++|.||++++.++... ++.+.++...+.+.+++|+||+||||+||++|++++++|
T Consensus         2 mklivGLGNPG~~Y~~TRHNiG~~~ld~la~~~~~~~~~~~~~~~~~~~~~~~~~~v~l~kP~tyMN~SG~~v~~~~~~~   81 (193)
T d2ptha_           2 IKLIVGLANPGAEYAATRHNAGAWFVDLLAERLRAPLREEAKFFGYTSRVTLGGEDVRLLVPTTFMNLSGKAVAAMASFF   81 (193)
T ss_dssp             CCEEEECCCCSTTTTTSGGGHHHHHHHHHHHHHTCCCEEEGGGTEEEEEEEETTEEEEEEEECSCGGGTHHHHHHHHHHH
T ss_pred             EEEEEECCCCchhhCcCchHHHHHHHHHHHHHcCCCcccccccceeeeeeeecCceEEEEecceeccccchhHHHHHHHh
Confidence            5799999999999999999999999999999999987643 567888888999999999999999999999999999999


Q ss_pred             CCCCccEE-EEecCCCCCceEEEccCCCCCCCCcHHHHHHhhcCCCCccEEEEcccCCCCCCccccccccCCCHHHHHHH
Q 026114          128 QVPLRHIL-IYDEMSLMNGVLRLQPKGGHGHHNGLKSVMNHLDGCREFPRLCIGIGNPPGKMDMKAYLLQKFSPIEREQI  206 (243)
Q Consensus       128 ki~~~~il-IhDDldl~~G~irlk~~Gs~gGHNGLKSIi~~L~gt~~f~RLrIGIGrP~~~~~v~~yVLs~Fs~~E~~~l  206 (243)
                      ++++++|| ||||+|||+|++|+|++||+|||||||||+++||.+++|+|||||||||+.+.++++|||++|+++|++.|
T Consensus        82 ~i~~~~ilVihDDldl~~G~irlk~~Gs~gGHNGlkSI~~~LG~~~~f~RlriGIG~P~~~~~v~~yVL~~fs~~E~~~l  161 (193)
T d2ptha_          82 RINPDEILVAHDELDLPPGVAKFKLGGGHGGHNGLKDIISKLGNNPNFHRLRIGIGHPGDKNKVVGFVLGKPPVSEQKLI  161 (193)
T ss_dssp             TCCGGGEEEEEEETTSCTTCEEEEESCCCTTCHHHHHHHHHTTSCCCSEEEEEECCCCSSHHHHHHHHTSCCCHHHHHHH
T ss_pred             CCCHHHeEEEecchhccCCCcccccCCCccccccHHHHHHHhhcccchheeeeeccCCcccCCccceeCCCCCHHHHHHH
Confidence            99999999 99999999999999999999999999999999954458999999999998877899999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHhCHHHHHHhhhCCCC
Q 026114          207 DAALEQGVEAVRTLVLNGFDQNISRFNMGQK  237 (243)
Q Consensus       207 ~~~l~~a~~al~~li~~g~~~~mn~~n~~~~  237 (243)
                      +++++.++++++.|+.+|++++||+||+.++
T Consensus       162 ~~~i~~~~~~i~~~i~~g~~~amn~~N~~k~  192 (193)
T d2ptha_         162 DEAIDEAARCTEMWFTDGLTKATNRLHAFKA  192 (193)
T ss_dssp             HHHHHHHHHHHHHHHHHCHHHHHHHHHHTTT
T ss_pred             HHHHHHHHHHHHHHHHCCHHHHHHHHhCcCC
Confidence            9999999999999999999999999998764