Citrus Sinensis ID: 026118

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240---
Protein Sequence
MIKLGEGIVNHPEDVSVDGNGVLYTATGDGWIKRMHPNGTWEDWHQVGSQSLLGLTTTKENNVIIVCDSQQGLLKVSEEGVTVLVSQFNGSQLRFANDVIEASDGSLYFTVSSTKFTPAEYYLDLVSGEPHGVLLKYDPSTNQTSLVLDGLYFANGVALSEDERFLVVCESWKFRCVKHFLKVSGRTDREIFIDNLPGGPDNVNLARDGSFWISIIKMDPKGIQALQSCKERKQAVGSISRTD
Secondary Structure (PSIPRED)
cEEEcccccccccEEEEEccccEEEEccccEEEEEEccccEEEEEEEcccccccEEEEccccEEEEEEccccEEEEccccEEEEEEEEcccEEEccccEEEcccccEEEEEcccccccccccccccccccccEEEEEEcccccEEEEccccccccEEEEcccccEEEEEEccccEEEEEEEEcccccccEEEEEccccccccEEEcccccEEEEEEEcccccEEEEEcccHHHHEEEcccccc
Secondary Structure Prediction (SSPRO)
cEEEEcccccccccEEEcccccEEEEccccEEEEEEccccEEEEEEcccccccEEEEccccccEEEEEccccEEEEcccccEEEEEcccccEEEEccccEEccccEEEEEcccccccHHHHHHHHHccccccEEEEEcccccEEEEEEccccccccEEEcccccEEEEEEccHHHEEEEEEcccccccHHHHHHccccccccccccccccEEEEEEccccHHHHHHcccHHHHHHHHcccccc
Coil and Loop (DISEMBL)
miklgegivnhpedvsvdgngvlytatgdgwikrmhpngtwedwhqvgsqsllgltttkennvIIVCDsqqgllkvsEEGVTVLVSQFngsqlrfandvieasdgslyftvsstkftpaeyyldlvsgephgvllkydpstnqtslvLDGLYFangvalsedERFLVVCESWKFRCVKHFLkvsgrtdreifidnlpggpdnvnlardgsFWISIIKMDPKGIQALQSCKERKQAVGSISRTD
Flexible Loop (DISEMBL)
miklgegivnhpedvsvdgNGVLYTATGDGWIKRMHPNGTWEDWHQVGSQSLLGLTTTKENNVIIVCDSQQGLLKVSEEGVTVLVSQFNGSQLRFANDVIEASDGSLYFTVSSTKFTPAEYYLDLVSGEPHGVLLKYDPSTNQTSLVLDGLYFANGVALSEDERFLVVCESWKFRCVKHflkvsgrtdrEIFIdnlpggpdnvnLARDGSFWISIIKMDPKGIQAlqsckerkqavgsisrtd
Low Complexity Region (SEG)
MIKLGEGIVNHPEDVSVDGNGVLYTATGDGWIKRMHPNGTWEDWHQVGSQSLLGLTTTKENNVIIVCDSQQGLLKVSEEGVTVLVSQFNGSQLRFANDVIEASDGSLYFTVSSTKFTPAEYYLDLVSGEPHGVLLKYDPSTNQTSLVLDGLYFANGVALSEDERFLVVCESWKFRCVKHFLKVSGRTDREIFIDNLPGGPDNVNLARDGSFWISIIKMDPKGIQALQSCKERKQAVGSISRTD
Disordered region (IsUnstruct)
*************DVSVDGNGVLYTATGDGWIKRMHPNGTWEDWHQVGSQSLLGLTTTKENNVIIVCDSQQGLLKVSEEGVTVLVSQFNGSQLRFANDVIEASDGSLYFTVSSTKFTPAEYYLDLVSGEPHGVLLKYDPSTNQTSLVLDGLYFANGVALSEDERFLVVCESWKFRCVKHFLKVSGRTDREIFIDNLPGGPDNVNLARDGSFWISIIKMDPKGIQ*******************
Disordered Region (DISOPRED)
MIKLGEGIVNHPEDVSVDGNGVLYTATGDGWIKRMHPNGTWEDWHQVGSQSLLGLTTTKENNVIIVCDSQQGLLKVSEEGVTVLVSQFNGSQLRFANDVIEASDGSLYFTVSSTKFTPAEYYLDLVSGEPHGVLLKYDPSTNQTSLVLDGLYFANGVALSEDERFLVVCESWKFRCVKHFLKVSGRTDREIFIDNLPGGPDNVNLARDGSFWISIIKMDPKGIQALQSCKERKQAVGSIS***
Disordered Region (DISEMBL)
MIKLGEGIVNHPEDVSVDGNGVLYTATGDGWIKRMHPNGTWEDWHQVGSQSLLGLTTTKENNVIIVCDSQQGLLKVSEEGVTVLVSQFNGSQLRFANDVIEASDGSLYFTVSSTKFTPAEYYLDLVSGEPHGVLLKYDPSTNQTSLVLDGLYFANGVALSEDERFLVVCESWKFRCVKHFLKVSGRTDREIFIDNLPGGPDNVNLARDGSFWISIIKMDPKGIQAL*****************
Disordered Region (DISPRO)
MIKLGEGIVNHPEDVSVDGNGVLYTATGDGWIKRMHPNGTWEDWHQVGSQSLLGLTTTKENNVIIVCDSQQGLLKVSEEGVTVLVSQFNGSQLRFANDVIEASDGSLYFTVSSTKFTPAEYYLDLVSGEPHGVLLKYDPSTNQTSLVLDGLYFANGVALSEDERFLVVCESWKFRCVKHFLKVSGRTDREIFIDNLPGGPDNVNLARDGSFWISIIKMDPKGIQALQSCKERKQAVGSISR**
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MIKLGEGIVNHPEDVSVDGNGVLYTATGDGWIKRMHPNGTWEDWHQVGSQSLLGLTTTKENNVIIVCDSQQGLLKVSEEGVTVLVSQFNGSQLRFANDVIEASDGSLYFTVSSTKFTPAEYYLDLVSGEPHGVLLKYDPSTNQTSLVLDGLYFANGVALSEDERFLVVCESWKFRCVKHFLKVSGRTDREIFIDNLPGGPDNVNLARDGSFWISIIKMDPKGIQALQSCKERKQAVGSISRTD
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	243	2.2.26 [Sep-21-2011]
Q3T0E5	412	Adipocyte plasma membrane	yes	no	0.917	0.541	0.312	9e-23
Q7TP48	376	Adipocyte plasma membrane	yes	no	0.872	0.563	0.307	2e-22
Q9HDC9	416	Adipocyte plasma membrane	yes	no	0.934	0.545	0.301	1e-21
Q5ZIF1	415	Adipocyte plasma membrane	yes	no	0.930	0.544	0.316	2e-21
Q9D7N9	415	Adipocyte plasma membrane	yes	no	0.872	0.510	0.298	3e-21
B5X3B2	416	Adipocyte plasma membrane	N/A	no	0.880	0.514	0.289	2e-17
Q803F5	415	Adipocyte plasma membrane	no	no	0.893	0.522	0.286	4e-17
P94111	335	Strictosidine synthase 1	no	no	0.872	0.632	0.238	1e-12
P68175	344	Strictosidine synthase OS	N/A	no	0.843	0.595	0.263	5e-12
P68174	342	Strictosidine synthase (F	N/A	no	0.843	0.599	0.263	5e-12

>sp|Q3T0E5|APMAP_BOVIN Adipocyte plasma membrane-associated protein OS=Bos taurus GN=APMAP PE=2 SV=1

 Score =  107 bits (266), Expect = 9e-23,   Method: Compositional matrix adjust.
 Identities = 79/253 (31%), Positives = 129/253 (50%), Gaps = 30/253 (11%)

Query: 3   KLGEGIVNHPEDVSVDGNGVLYTATGDGWIKRMHPNGTWEDWHQVGSQSLLGLTTTKE-- 60
           +L E  +  PE ++  G+ V++T T DG + ++  NG  E   + GS    G   T++  
Sbjct: 92  RLFENQLVGPESIANIGD-VMFTGTADGRVVKLE-NGEVETIARFGS----GPCKTRDDE 145

Query: 61  -------------NNVIIVCDSQQGLLKVS--EEGVTVLVSQ---FNGSQLRFANDVIEA 102
                        N  + V D+ +GL +V+  +  V +L+S      G ++ F ND+   
Sbjct: 146 PACGRPLGIRAGPNGTLFVVDAYKGLFEVNPWKREVKLLLSSETPIEGRKMSFLNDLTVT 205

Query: 103 SDG-SLYFTVSSTKFTPAEYYLDLVSGEPHGVLLKYDPSTNQTSLVLDGLYFANGVALSE 161
            DG  +YFT SS+K+   +Y L L+ G   G LL+YD  T +  ++LD L F NGV LS 
Sbjct: 206 RDGRKIYFTDSSSKWQRRDYLLLLMEGTDDGRLLEYDTQTKEVKVLLDHLRFPNGVQLSP 265

Query: 162 DERFLVVCESWKFRCVKHFLKVSGRTDREIFIDNLPGGPDNVNLARDGSFWISI--IKMD 219
            E F++V E    R  + ++    +   ++F++NLPG PDN+  +  G +W+S+  I+ +
Sbjct: 266 AEDFVLVVELAMVRIRRFYVSGLMKGGADVFVENLPGFPDNIRASSSGGYWVSMAAIRAN 325

Query: 220 PKGIQALQSCKER 232
           P G   L    ER
Sbjct: 326 P-GFSMLDFLSER 337

Exhibits strong arylesterase activity with beta-naphthyl acetate and phenyl acetate. May play a role in adipocyte differentiation.
Bos taurus (taxid: 9913)

>sp|Q7TP48|APMAP_RAT Adipocyte plasma membrane-associated protein OS=Rattus norvegicus GN=Apmap PE=2 SV=2

 Score =  105 bits (263), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 74/241 (30%), Positives = 126/241 (52%), Gaps = 29/241 (12%)

Query: 3   KLGEGIVNHPEDVSVDGNGVLYTATGDGWIKRMHPNGTWEDWHQVGSQSLLGLTTTKE-- 60
           +L E  +N PE + V+   VL+T T DG + ++  NG  E   + GS    G   T++  
Sbjct: 53  RLFENQLNGPESI-VNIGDVLFTGTADGRVVKLE-NGEIETIARFGS----GPCKTRDDE 106

Query: 61  -------------NNVIIVCDSQQGLLKVSEE--GVTVLVSQ---FNGSQLRFANDVIEA 102
                        N  + V D+ +GL +V+ +   V +L+S      G ++ F ND+   
Sbjct: 107 PTCGRPLGIRVGPNGTLFVVDAYKGLFEVNPQKRSVKLLLSSETPIEGKKMSFVNDLTIT 166

Query: 103 SDG-SLYFTVSSTKFTPAEYYLDLVSGEPHGVLLKYDPSTNQTSLVLDGLYFANGVALSE 161
            DG  +YFT SS+K+   +Y L ++ G   G LL+YD  T +  ++LD L F NGV LS 
Sbjct: 167 RDGRKIYFTDSSSKWQRRDYLLLVMEGTDDGRLLEYDTVTKEVKVLLDQLQFPNGVQLSP 226

Query: 162 DERFLVVCESWKFRCVKHFLKVSGRTDREIFIDNLPGGPDNVNLARDGSFWI--SIIKMD 219
           +E F++V E+   R  + ++    +   ++F++N+PG PDN+  +  G +W+  + I+ +
Sbjct: 227 EEDFVLVAETAMARIRRVYVSGLMKGGADMFVENMPGFPDNIRPSSSGGYWVAAATIRAN 286

Query: 220 P 220
           P
Sbjct: 287 P 287

Exhibits strong arylesterase activity with beta-naphthyl acetate and phenyl acetate. May play a role in adipocyte differentiation.

Rattus norvegicus (taxid: 10116)

>sp|Q9HDC9|APMAP_HUMAN Adipocyte plasma membrane-associated protein OS=Homo sapiens GN=APMAP PE=1 SV=2

 Score =  103 bits (256), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 75/249 (30%), Positives = 125/249 (50%), Gaps = 22/249 (8%)

Query: 3   KLGEGIVNHPEDVSVDGNGVLYTATGDGWIKRMHPNGTWEDWHQVGSQSL---------- 52
           +L E  +  PE ++  G+ V++T T DG + ++  NG  E   + GS             
Sbjct: 93  RLFENQLVGPESIAHIGD-VMFTGTADGRVVKLE-NGEIETIARFGSGPCKTRDDEPVCG 150

Query: 53  --LGLTTTKENNVIIVCDSQQGLLKVS--EEGVTVLVSQ---FNGSQLRFANDVIEASDG 105
             LG+     N  + V D+ +GL +V+  +  V +L+S      G  + F ND+    DG
Sbjct: 151 RPLGIRAGP-NGTLFVADAYKGLFEVNPWKREVKLLLSSETPIEGKNMSFVNDLTVTQDG 209

Query: 106 -SLYFTVSSTKFTPAEYYLDLVSGEPHGVLLKYDPSTNQTSLVLDGLYFANGVALSEDER 164
             +YFT SS+K+   +Y L ++ G   G LL+YD  T +  ++LD L F NGV LS  E 
Sbjct: 210 RKIYFTDSSSKWQRRDYLLLVMEGTDDGRLLEYDTVTREVKVLLDQLRFPNGVQLSPAED 269

Query: 165 FLVVCESWKFRCVKHFLKVSGRTDREIFIDNLPGGPDNVNLARDGSFWISIIKMDP-KGI 223
           F++V E+   R  + ++    +   ++F++N+PG PDN+  +  G +W+ +  + P  G 
Sbjct: 270 FVLVAETTMARIRRVYVSGLMKGGADLFVENMPGFPDNIRPSSSGGYWVGMSTIRPNPGF 329

Query: 224 QALQSCKER 232
             L    ER
Sbjct: 330 SMLDFLSER 338

Exhibits strong arylesterase activity with beta-naphthyl acetate and phenyl acetate. May play a role in adipocyte differentiation.

Homo sapiens (taxid: 9606)

>sp|Q5ZIF1|APMAP_CHICK Adipocyte plasma membrane-associated protein OS=Gallus gallus GN=APMAP PE=2 SV=1

 Score =  102 bits (255), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 79/250 (31%), Positives = 127/250 (50%), Gaps = 24/250 (9%)

Query: 3   KLGEGIVNHPEDVSVDGNGVLYTATGDGWIKRMH-------------PNGTWEDWHQVGS 49
           +L E  +  PE + V+   VL+T T DG I ++              P GT ED    G 
Sbjct: 92  RLWENQLVGPESI-VNIGDVLFTGTADGKILKIEDGEVQTVARIGHGPCGTPEDEPTCGR 150

Query: 50  QSLLGLTTTKENNVIIVCDSQQGLLKVSE-EGVT-VLVSQ---FNGSQLRFANDVIEASD 104
              LG+     NN + V D+  GL +V+   G T +LVS      G +L F ND+    D
Sbjct: 151 P--LGIRVGP-NNTLFVADAYYGLYEVNPGTGETKMLVSTKTLIEGQKLSFLNDLTVTQD 207

Query: 105 G-SLYFTVSSTKFTPAEYYLDLVSGEPHGVLLKYDPSTNQTSLVLDGLYFANGVALSEDE 163
           G  +YFT SS+K+   ++   ++ G   G LL+YD  T +  +++ GL F NGV LS  E
Sbjct: 208 GRKIYFTDSSSKWQRRDFLFLVMEGTDDGRLLEYDTVTKEVKVLMVGLRFPNGVQLSPAE 267

Query: 164 RFLVVCESWKFRCVKHFLKVSGRTDREIFIDNLPGGPDNVNLARDGSFWISIIKMDP-KG 222
            F++V E+   R  ++++    +   ++F++N+PG PDN+ L+  G +W+++  + P  G
Sbjct: 268 DFVLVLETAMARIRRYYVSGLMKGGADMFVENMPGLPDNIRLSSSGGYWVAMPVVRPNPG 327

Query: 223 IQALQSCKER 232
              L    E+
Sbjct: 328 FSMLDFLSEK 337

Gallus gallus (taxid: 9031)

>sp|Q9D7N9|APMAP_MOUSE Adipocyte plasma membrane-associated protein OS=Mus musculus GN=Apmap PE=1 SV=1

 Score =  102 bits (254), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 72/241 (29%), Positives = 125/241 (51%), Gaps = 29/241 (12%)

Query: 3   KLGEGIVNHPEDVSVDGNGVLYTATGDGWIKRMHPNGTWEDWHQVGSQSLLGLTTTKE-- 60
           +L E  ++ PE + V+   VL+T T DG + ++  NG  E   + GS    G   T++  
Sbjct: 92  RLFENQLSGPESI-VNIGDVLFTGTADGRVVKLE-NGEIETIARFGS----GPCKTRDDE 145

Query: 61  -------------NNVIIVCDSQQGLLKVSEE--GVTVLVSQ---FNGSQLRFANDVIEA 102
                        N  + V D+ +GL +V+ +   V +L+S      G ++ F ND+   
Sbjct: 146 PTCGRPLGIRAGPNGTLFVVDAYKGLFEVNPQKRSVKLLLSSETPIEGKKMSFVNDLTVT 205

Query: 103 SDG-SLYFTVSSTKFTPAEYYLDLVSGEPHGVLLKYDPSTNQTSLVLDGLYFANGVALSE 161
            DG  +YFT SS+K+   +Y L ++     G LL+YD  T +  ++LD L F NGV LS 
Sbjct: 206 RDGRKIYFTDSSSKWQRRDYLLLVMEATDDGRLLEYDTVTKEVKVLLDQLQFPNGVQLSP 265

Query: 162 DERFLVVCESWKFRCVKHFLKVSGRTDREIFIDNLPGGPDNVNLARDGSFWI--SIIKMD 219
           +E F++V E+   R  + ++    +   ++F++N+PG PDN+  +  G +W+  + I+ +
Sbjct: 266 EEDFVLVAETTMARIRRVYVSGLMKGGADMFVENMPGFPDNIRPSSSGGYWVAAATIRAN 325

Query: 220 P 220
           P
Sbjct: 326 P 326

Exhibits strong arylesterase activity with beta-naphthyl acetate and phenyl acetate (By similarity). May play a role in adipocyte differentiation.

Mus musculus (taxid: 10090)

>sp|B5X3B2|APMAP_SALSA Adipocyte plasma membrane-associated protein OS=Salmo salar GN=apmap PE=2 SV=1

 Score = 89.4 bits (220), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 69/238 (28%), Positives = 117/238 (49%), Gaps = 24/238 (10%)

Query: 3   KLGEGIVNHPEDVSVDGNGVLYTATGDGWIKRMHP--------------NGTWEDWHQVG 48
           +L E  +  PE ++  G+ ++YT T DG I ++                +G+ E     G
Sbjct: 92  RLFEDQLVGPESIANFGD-LIYTGTADGKIVKIEGKSITVIARLGKPPCDGSREQEPSCG 150

Query: 49  SQSLLGLTTTKENNVIIVCDSQQGLLKVSEEG--VTVLVS---QFNGSQLRFANDVIEAS 103
               LG+     N  + V D+  GL KV+     VT LVS      G +L F ND+    
Sbjct: 151 RP--LGIRVGP-NGTLFVADAYLGLFKVNPVTGEVTNLVSAGQMVGGRRLSFVNDLDVTQ 207

Query: 104 DG-SLYFTVSSTKFTPAEYYLDLVSGEPHGVLLKYDPSTNQTSLVLDGLYFANGVALSED 162
           DG  +YFT SS+++   +Y   ++     G +L+YD  T + +++++ L FANG+ L  D
Sbjct: 208 DGRKVYFTDSSSRWQRRDYLHLIMEATADGRVLEYDTETKEVTVLMENLRFANGIQLFPD 267

Query: 163 ERFLVVCESWKFRCVKHFLKVSGRTDREIFIDNLPGGPDNVNLARDGSFWISIIKMDP 220
           E  ++V E+   R  +  +    +   + F+DNLPG PDN+  +  G +W+++  + P
Sbjct: 268 EESVLVAETTMARIRRVHVSGLNKGGMDTFVDNLPGFPDNIRRSSSGGYWVAMSAVRP 325

Salmo salar (taxid: 8030)

>sp|Q803F5|APMAP_DANRE Adipocyte plasma membrane-associated protein OS=Danio rerio GN=apmap PE=2 SV=1

 Score = 88.6 bits (218), Expect = 4e-17,   Method: Compositional matrix adjust.
 Identities = 69/241 (28%), Positives = 116/241 (48%), Gaps = 24/241 (9%)

Query: 12  PEDVSVDGNGVLYTATGDGWIKRMH-------------PNGTWEDWHQVGSQSLLGLTTT 58
           PE ++  G+ V YT T DG I ++              P G+ E  H  G    LG+   
Sbjct: 101 PESLANIGD-VFYTGTADGKIVKIEGRNIHVLATIGKPPCGSREHEHTCGRP--LGIRVG 157

Query: 59  KENNVIIVCDSQQGLLKVSEEG--VTVLVS---QFNGSQLRFANDVIEASDGS-LYFTVS 112
             N  + V D+  GL +V+     V  LVS   +  G +L F ND+    DG  +YFT S
Sbjct: 158 P-NGTLFVADAYLGLFEVNPVTGEVKSLVSTEKRIAGRRLGFVNDLDVTQDGKKVYFTDS 216

Query: 113 STKFTPAEYYLDLVSGEPHGVLLKYDPSTNQTSLVLDGLYFANGVALSEDERFLVVCESW 172
           S+++   ++   ++     G +L+YD  T + +++++ L F NG+ L  DE  ++V E+ 
Sbjct: 217 SSRWQRRDFMHLIMEATADGRVLEYDTETKEVNVMMENLRFPNGIQLFPDEESVLVAETT 276

Query: 173 KFRCVKHFLKVSGRTDREIFIDNLPGGPDNVNLARDGSFWISIIKMDPK-GIQALQSCKE 231
             R  +  +    +   + FI+NLPG PDN+  +  G +W+++  + P  G   L    +
Sbjct: 277 MARIKRVHVSGLNKGGMDTFIENLPGFPDNIRRSSSGGYWVAMSAVRPNPGFSMLDFLSQ 336

Query: 232 R 232
           R
Sbjct: 337 R 337

Danio rerio (taxid: 7955)

>sp|P94111|STS1_ARATH Strictosidine synthase 1 OS=Arabidopsis thaliana GN=SS1 PE=2 SV=2

 Score = 73.9 bits (180), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 58/243 (23%), Positives = 110/243 (45%), Gaps = 31/243 (12%)

Query: 12  PEDVSVDGNGV-LYTATGDGWIKRMHPNGTWEDWHQVGSQS------------------- 51
           PE  + D  G   YT    G I +  P   + D+ Q+   S                   
Sbjct: 39  PEAFAFDSTGKGFYTGVSGGKILKYLPETGYVDFAQITESSNSSWCDGTIGTALAGRCGR 98

Query: 52  LLGLTTTKENNVIIVCDSQQGLLKVSEEG--VTVLVSQFNGSQLRFANDV-IEASDGSLY 108
             G+   ++   + V D+  GL  +S  G   T +    +G   +F + + ++ + G +Y
Sbjct: 99  PAGIAFNEKTGDLYVADAPLGLHVISPAGGLATKITDSVDGKPFKFLDGLDVDPTTGVVY 158

Query: 109 FTVSSTKFTPAEYYLDLVSGEPHGVLLKYDPSTNQTSLVLDGLYFANGVALSEDERFLVV 168
           FT  S++F+P +  + L   +  G L KYDPST   +++++GL  + G A+S D  F++V
Sbjct: 159 FTSFSSRFSPIQVLIALGLKDATGKLYKYDPSTKVVTVLMEGLSGSAGCAVSSDGSFVLV 218

Query: 169 CESWKFRCVKHFLKVSGRTDREIFIDNLPGGPDNVN-LARDGSFWIS------IIKMDPK 221
            +  K    ++++K       E F +++   PDN+  +   G+FW++      I+  +P 
Sbjct: 219 SQFTKSNIKRYWIKGPKAGSSEDFTNSV-SNPDNIKRIGSTGNFWVASVVNKIIVPTNPS 277

Query: 222 GIQ 224
            ++
Sbjct: 278 AVK 280

Catalyzes the stereospecific condensation of tryptamine with secologanin to form strictosidine, the key intermediate of indole alkaloid biosynthesis.

Arabidopsis thaliana (taxid: 3702)

EC: 4

EC: .

EC: 3

EC: .

EC: 3

EC: .

EC: 2

>sp|P68175|STSY_RAUSE Strictosidine synthase OS=Rauvolfia serpentina GN=STR1 PE=1 SV=1

 Score = 71.6 bits (174), Expect = 5e-12,   Method: Compositional matrix adjust.
 Identities = 60/228 (26%), Positives = 104/228 (45%), Gaps = 23/228 (10%)

Query: 18  DGNGVLYTATGDGWIKRMHPNGTW-----EDWHQVGSQSLLG----LTTTKENNVIIVCD 68
           DG  + Y     G++   + +  W     E+      + L G    ++   +NN + + D
Sbjct: 61  DGRVIKYEGPNSGFVDFAYASPYWNKAFCENSTDAEKRPLCGRTYDISYNLQNNQLYIVD 120

Query: 69  SQQGLLKVSEEG--VTVLVSQFNGSQLRFANDV-IEASDGSLYFTVSSTKFTPAEYYLDL 125
               L  V  EG   T L +  +G   ++   V ++   G +YFT  ST +        +
Sbjct: 121 CYYHLSVVGSEGGHATQLATSVDGVPFKWLYAVTVDQRTGIVYFTDVSTLYDDRGVQQIM 180

Query: 126 VSGEPHGVLLKYDPSTNQTSLVLDGLYFANGVALSEDERFLVVCESWKFRCVKHFLKVSG 185
            + +  G L+KYDPST +T+L+L  L+   G  +S D  F++V E    + VK++L+   
Sbjct: 181 DTSDKTGRLIKYDPSTKETTLLLKELHVPGGAEVSADSSFVLVAEFLSHQIVKYWLEGPK 240

Query: 186 RTDREIFIDNLPGGPDNVNLARDGSFWISII---------KMDPKGIQ 224
           +   E+ +  +P  P N+    DG FW+S           ++DPKGI+
Sbjct: 241 KGTAEVLV-KIP-NPGNIKRNADGHFWVSSSEELDGNMHGRVDPKGIK 286

Catalyzes the stereospecific condensation of tryptamine with secologanin to form strictosidine, the key intermediate of indole alkaloid biosynthesis.

Rauvolfia serpentina (taxid: 4060)

EC: 4

EC: .

EC: 3

EC: .

EC: 3

EC: .

EC: 2

>sp|P68174|STSY_RAUMA Strictosidine synthase (Fragment) OS=Rauvolfia mannii GN=STR1 PE=3 SV=1

 Score = 71.6 bits (174), Expect = 5e-12,   Method: Compositional matrix adjust.
 Identities = 60/228 (26%), Positives = 104/228 (45%), Gaps = 23/228 (10%)

Query: 18  DGNGVLYTATGDGWIKRMHPNGTW-----EDWHQVGSQSLLG----LTTTKENNVIIVCD 68
           DG  + Y     G++   + +  W     E+      + L G    ++   +NN + + D
Sbjct: 59  DGRVIKYEGPNSGFVDFAYASPYWNKAFCENSTDAEKRPLCGRTYDISYNLQNNQLYIVD 118

Query: 69  SQQGLLKVSEEG--VTVLVSQFNGSQLRFANDV-IEASDGSLYFTVSSTKFTPAEYYLDL 125
               L  V  EG   T L +  +G   ++   V ++   G +YFT  ST +        +
Sbjct: 119 CYYHLSVVGSEGGHATQLATSVDGVPFKWLYAVTVDQRTGIVYFTDVSTLYDDRGVQQIM 178

Query: 126 VSGEPHGVLLKYDPSTNQTSLVLDGLYFANGVALSEDERFLVVCESWKFRCVKHFLKVSG 185
            + +  G L+KYDPST +T+L+L  L+   G  +S D  F++V E    + VK++L+   
Sbjct: 179 DTSDKTGRLIKYDPSTKETTLLLKELHVPGGAEVSADSSFVLVAEFLSHQIVKYWLEGPK 238

Query: 186 RTDREIFIDNLPGGPDNVNLARDGSFWISII---------KMDPKGIQ 224
           +   E+ +  +P  P N+    DG FW+S           ++DPKGI+
Sbjct: 239 KGTAEVLV-KIP-NPGNIKRNADGHFWVSSSEELDGNMHGRVDPKGIK 284

Catalyzes the stereospecific condensation of tryptamine with secologanin to form strictosidine, the key intermediate of indole alkaloid biosynthesis.

Rauvolfia mannii (taxid: 4062)

EC: 4

EC: .

EC: 3

EC: .

EC: 3

EC: .

EC: 2

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	243
297738547	461	unnamed protein product [Vitis vinifera]	0.979	0.516	0.581	2e-81
225444698	650	PREDICTED: adipocyte plasma membrane-ass	0.979	0.366	0.581	2e-81
225444700	368	PREDICTED: adipocyte plasma membrane-ass	0.987	0.652	0.572	7e-79
297738546	382	unnamed protein product [Vitis vinifera]	0.971	0.617	0.577	2e-78
225444696	365	PREDICTED: adipocyte plasma membrane-ass	0.971	0.646	0.577	3e-78
357450079	372	Adipocyte plasma membrane-associated pro	0.987	0.645	0.572	1e-76
388499476	372	unknown [Medicago truncatula]	0.987	0.645	0.572	1e-76
255550417	356	Adipocyte plasma membrane-associated pro	0.987	0.674	0.560	3e-76
357450077	352	Adipocyte plasma membrane-associated pro	0.987	0.681	0.572	3e-76
388492006	352	unknown [Medicago truncatula]	0.987	0.681	0.576	4e-76

>gi|297738547|emb|CBI27792.3| unnamed protein product [Vitis vinifera]

 Score =  307 bits (787), Expect = 2e-81,   Method: Compositional matrix adjust.
 Identities = 139/239 (58%), Positives = 190/239 (79%), Gaps = 1/239 (0%)

Query: 3   KLGEGIVNHPEDVSVDGNGVLYTATGDGWIKRMHPNGTWEDWHQVGSQSLLGLTTTKENN 62
           K+GEG+++ PEDV  DG G+LYTAT DGWIKR+H NG+WEDW  +G  +LLG+TTT+   
Sbjct: 158 KIGEGLLDKPEDVCFDGEGILYTATRDGWIKRLHRNGSWEDWRLIGGDTLLGVTTTRTGG 217

Query: 63  VIIVCDSQQGLLKVSEEGVTVLVSQFNGSQLRFANDVIEASDGSLYFTVSSTKFTPAEYY 122
            I+VCD+Q+GLLKV E+GV++L S  NGS++RFA+DVIEASDGSLYF+V+S+KF   ++Y
Sbjct: 218 -IVVCDTQKGLLKVGEDGVSLLTSHVNGSEIRFADDVIEASDGSLYFSVASSKFGLHDWY 276

Query: 123 LDLVSGEPHGVLLKYDPSTNQTSLVLDGLYFANGVALSEDERFLVVCESWKFRCVKHFLK 182
           LD++  +PHG LLKYDP  N+TS++LD L FANGVALS+DE FLVVCE+WKFRC+K++LK
Sbjct: 277 LDVLEAKPHGQLLKYDPLLNETSILLDNLAFANGVALSQDEDFLVVCETWKFRCLKYWLK 336

Query: 183 VSGRTDREIFIDNLPGGPDNVNLARDGSFWISIIKMDPKGIQALQSCKERKQAVGSISR 241
              +   E+F+DNLPGGPDN+NLA DGSFWI+++++  +G+  + + K  K  V +  +
Sbjct: 337 GERKGRTEVFVDNLPGGPDNINLAPDGSFWIALLELSREGMGFVHTSKASKHLVATFPK 395

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225444698|ref|XP_002277787.1| PREDICTED: adipocyte plasma membrane-associated protein-like [Vitis vinifera]

 Score =  307 bits (787), Expect = 2e-81,   Method: Compositional matrix adjust.
 Identities = 139/239 (58%), Positives = 190/239 (79%), Gaps = 1/239 (0%)

Query: 3   KLGEGIVNHPEDVSVDGNGVLYTATGDGWIKRMHPNGTWEDWHQVGSQSLLGLTTTKENN 62
           K+GEG+++ PEDV  DG G+LYTAT DGWIKR+H NG+WEDW  +G  +LLG+TTT+   
Sbjct: 347 KIGEGLLDKPEDVCFDGEGILYTATRDGWIKRLHRNGSWEDWRLIGGDTLLGVTTTRTGG 406

Query: 63  VIIVCDSQQGLLKVSEEGVTVLVSQFNGSQLRFANDVIEASDGSLYFTVSSTKFTPAEYY 122
            I+VCD+Q+GLLKV E+GV++L S  NGS++RFA+DVIEASDGSLYF+V+S+KF   ++Y
Sbjct: 407 -IVVCDTQKGLLKVGEDGVSLLTSHVNGSEIRFADDVIEASDGSLYFSVASSKFGLHDWY 465

Query: 123 LDLVSGEPHGVLLKYDPSTNQTSLVLDGLYFANGVALSEDERFLVVCESWKFRCVKHFLK 182
           LD++  +PHG LLKYDP  N+TS++LD L FANGVALS+DE FLVVCE+WKFRC+K++LK
Sbjct: 466 LDVLEAKPHGQLLKYDPLLNETSILLDNLAFANGVALSQDEDFLVVCETWKFRCLKYWLK 525

Query: 183 VSGRTDREIFIDNLPGGPDNVNLARDGSFWISIIKMDPKGIQALQSCKERKQAVGSISR 241
              +   E+F+DNLPGGPDN+NLA DGSFWI+++++  +G+  + + K  K  V +  +
Sbjct: 526 GERKGRTEVFVDNLPGGPDNINLAPDGSFWIALLELSREGMGFVHTSKASKHLVATFPK 584

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225444700|ref|XP_002277807.1| PREDICTED: adipocyte plasma membrane-associated protein [Vitis vinifera] gi|297738548|emb|CBI27793.3| unnamed protein product [Vitis vinifera]

 Score =  299 bits (766), Expect = 7e-79,   Method: Compositional matrix adjust.
 Identities = 138/241 (57%), Positives = 181/241 (75%), Gaps = 1/241 (0%)

Query: 1   MIKLGEGIVNHPEDVSVDGNGVLYTATGDGWIKRMHPNGTWEDWHQVGSQSLLGLTTTKE 60
           + K+GEG +N PED+  D  G+LYTAT DGWIKR+H NG+WEDW  +G  +LLG+TT + 
Sbjct: 63  VTKIGEGFLNKPEDLCFDEEGILYTATRDGWIKRLHRNGSWEDWKLIGGYALLGITTARA 122

Query: 61  NNVIIVCDSQQGLLKVSEEGVTVLVSQFNGSQLRFANDVIEASDGSLYFTVSSTKFTPAE 120
              I VCD+Q+GLLKV E+GV+ L S  NGS++RFA+DVIEASDGSLYF+V+S+KF    
Sbjct: 123 GG-IFVCDAQKGLLKVGEDGVSFLTSHVNGSEIRFADDVIEASDGSLYFSVASSKFGLHH 181

Query: 121 YYLDLVSGEPHGVLLKYDPSTNQTSLVLDGLYFANGVALSEDERFLVVCESWKFRCVKHF 180
           +YLDL+  +PHG LLKYDP  N+TS++LD L F NGVALS+DE FLVVCE+WKFRC+K++
Sbjct: 182 WYLDLLEAKPHGQLLKYDPLLNETSIILDNLAFPNGVALSQDEDFLVVCETWKFRCLKYW 241

Query: 181 LKVSGRTDREIFIDNLPGGPDNVNLARDGSFWISIIKMDPKGIQALQSCKERKQAVGSIS 240
           LK   +   E FIDNLP GPDN+NLA DGSFWI++IK+   G + + + K  K  + +  
Sbjct: 242 LKGERKGRTETFIDNLPNGPDNINLAPDGSFWIALIKLASDGFEFVHASKALKHFLATFP 301

Query: 241 R 241
           +
Sbjct: 302 K 302

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297738546|emb|CBI27791.3| unnamed protein product [Vitis vinifera]

 Score =  297 bits (761), Expect = 2e-78,   Method: Compositional matrix adjust.
 Identities = 138/239 (57%), Positives = 185/239 (77%), Gaps = 3/239 (1%)

Query: 3   KLGEGIVNHPEDVSVDGNGVLYTATGDGWIKRMHPNGTWEDWHQVGSQSLLGLTTTKENN 62
           K+GEG+++ PEDV  DG G+LYTAT DGWIKR+H NG+WEDW  +G  SL+G+T T+   
Sbjct: 81  KIGEGLLDKPEDVCFDGEGILYTATRDGWIKRLHRNGSWEDWRLIGGGSLIGVTPTRTGG 140

Query: 63  VIIVCDSQQGLLKVSEEGVTVLVSQFNGSQLRFANDVIEASDGSLYFTVSSTKFTPAEYY 122
            IIVCD ++GLLKV E+GV++L S  NGS+++FANDVIEA+DGS+YF+V+ST+F    +Y
Sbjct: 141 -IIVCDIEKGLLKVGEDGVSILTSHVNGSKIKFANDVIEAADGSVYFSVASTEFV--NWY 197

Query: 123 LDLVSGEPHGVLLKYDPSTNQTSLVLDGLYFANGVALSEDERFLVVCESWKFRCVKHFLK 182
           LD++  +PHG LLKYDP  N+TS++LD L FANGVALS+DE FLVVCE+WKFRC+K++L+
Sbjct: 198 LDVLEAKPHGQLLKYDPLLNETSILLDNLAFANGVALSQDEDFLVVCETWKFRCLKYWLE 257

Query: 183 VSGRTDREIFIDNLPGGPDNVNLARDGSFWISIIKMDPKGIQALQSCKERKQAVGSISR 241
              +   E FIDNLPGGPDNVNLA DGSFWI++IK+   G + + + K  K  + +  +
Sbjct: 258 GERKGRTETFIDNLPGGPDNVNLAPDGSFWIALIKVTSDGFEFVHTSKALKHLLATFPK 316

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225444696|ref|XP_002277770.1| PREDICTED: adipocyte plasma membrane-associated protein-like [Vitis vinifera]

 Score =  297 bits (760), Expect = 3e-78,   Method: Compositional matrix adjust.
 Identities = 138/239 (57%), Positives = 185/239 (77%), Gaps = 3/239 (1%)

Query: 3   KLGEGIVNHPEDVSVDGNGVLYTATGDGWIKRMHPNGTWEDWHQVGSQSLLGLTTTKENN 62
           K+GEG+++ PEDV  DG G+LYTAT DGWIKR+H NG+WEDW  +G  SL+G+T T+   
Sbjct: 64  KIGEGLLDKPEDVCFDGEGILYTATRDGWIKRLHRNGSWEDWRLIGGGSLIGVTPTRTGG 123

Query: 63  VIIVCDSQQGLLKVSEEGVTVLVSQFNGSQLRFANDVIEASDGSLYFTVSSTKFTPAEYY 122
            IIVCD ++GLLKV E+GV++L S  NGS+++FANDVIEA+DGS+YF+V+ST+F    +Y
Sbjct: 124 -IIVCDIEKGLLKVGEDGVSILTSHVNGSKIKFANDVIEAADGSVYFSVASTEFV--NWY 180

Query: 123 LDLVSGEPHGVLLKYDPSTNQTSLVLDGLYFANGVALSEDERFLVVCESWKFRCVKHFLK 182
           LD++  +PHG LLKYDP  N+TS++LD L FANGVALS+DE FLVVCE+WKFRC+K++L+
Sbjct: 181 LDVLEAKPHGQLLKYDPLLNETSILLDNLAFANGVALSQDEDFLVVCETWKFRCLKYWLE 240

Query: 183 VSGRTDREIFIDNLPGGPDNVNLARDGSFWISIIKMDPKGIQALQSCKERKQAVGSISR 241
              +   E FIDNLPGGPDNVNLA DGSFWI++IK+   G + + + K  K  + +  +
Sbjct: 241 GERKGRTETFIDNLPGGPDNVNLAPDGSFWIALIKVTSDGFEFVHTSKALKHLLATFPK 299

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357450079|ref|XP_003595316.1| Adipocyte plasma membrane-associated protein [Medicago truncatula] gi|355484364|gb|AES65567.1| Adipocyte plasma membrane-associated protein [Medicago truncatula]

 Score =  291 bits (746), Expect = 1e-76,   Method: Compositional matrix adjust.
 Identities = 138/241 (57%), Positives = 183/241 (75%), Gaps = 1/241 (0%)

Query: 1   MIKLGEGIVNHPEDVSVDGNGVLYTATGDGWIKRMHPNGTWEDWHQVGSQSLLGLTTTKE 60
           +IKLGEG +  PEDV VD NGVLYTAT DGWIKRM  N  WE+W  + S SLLG+TT+K+
Sbjct: 66  VIKLGEGFLKQPEDVCVDKNGVLYTATRDGWIKRMVRNENWENWKHIDSSSLLGITTSKD 125

Query: 61  NNVIIVCDSQQGLLKVSEEGVTVLVSQFNGSQLRFANDVIEASDGSLYFTVSSTKFTPAE 120
              +IVCD+ +GLLKV+E+G +V++SQ NGSQL FA+DVIEASDG++YF+V S KF   +
Sbjct: 126 GG-LIVCDASEGLLKVTEDGFSVILSQVNGSQLMFADDVIEASDGNIYFSVGSNKFGLHD 184

Query: 121 YYLDLVSGEPHGVLLKYDPSTNQTSLVLDGLYFANGVALSEDERFLVVCESWKFRCVKHF 180
           +YLDL+   PHG LLKY+P+ N+T +V+D L FANGVALS+DE ++VVCE+WKFRCV+H+
Sbjct: 185 WYLDLLEARPHGQLLKYNPTLNETVIVIDNLTFANGVALSKDEDYVVVCETWKFRCVRHW 244

Query: 181 LKVSGRTDREIFIDNLPGGPDNVNLARDGSFWISIIKMDPKGIQALQSCKERKQAVGSIS 240
           LK       +IFI+NLPGGPDN+NLA DGSFWI+++++  K +  + +    K  + S  
Sbjct: 245 LKGINNGKTDIFIENLPGGPDNINLAPDGSFWIALVQLTSKRLGFVHTSIVCKHLLASFP 304

Query: 241 R 241
           R
Sbjct: 305 R 305

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|388499476|gb|AFK37804.1| unknown [Medicago truncatula]

 Score =  291 bits (745), Expect = 1e-76,   Method: Compositional matrix adjust.
 Identities = 138/241 (57%), Positives = 183/241 (75%), Gaps = 1/241 (0%)

Query: 1   MIKLGEGIVNHPEDVSVDGNGVLYTATGDGWIKRMHPNGTWEDWHQVGSQSLLGLTTTKE 60
           +IKLGEG +  PEDV VD NGVLYTAT DGWIKRM  N  WE+W  + S SLLG+TT+K+
Sbjct: 66  VIKLGEGFLKQPEDVCVDKNGVLYTATRDGWIKRMVRNENWENWKHIDSSSLLGITTSKD 125

Query: 61  NNVIIVCDSQQGLLKVSEEGVTVLVSQFNGSQLRFANDVIEASDGSLYFTVSSTKFTPAE 120
              +IVCD+ +GLLKV+E+G +V++SQ NGSQL FA+DVIEASDG++YF+V S KF   +
Sbjct: 126 GG-LIVCDASEGLLKVTEDGFSVILSQVNGSQLMFADDVIEASDGNIYFSVGSNKFGLHD 184

Query: 121 YYLDLVSGEPHGVLLKYDPSTNQTSLVLDGLYFANGVALSEDERFLVVCESWKFRCVKHF 180
           +YLDL+   PHG LLKY+P+ N+T +V+D L FANGVALS+DE ++VVCE+WKFRCV+H+
Sbjct: 185 WYLDLLEARPHGQLLKYNPTLNETVIVIDNLTFANGVALSKDEDYVVVCETWKFRCVRHW 244

Query: 181 LKVSGRTDREIFIDNLPGGPDNVNLARDGSFWISIIKMDPKGIQALQSCKERKQAVGSIS 240
           LK       +IFI+NLPGGPDN+NLA DGSFWI+++++  K +  + +    K  + S  
Sbjct: 245 LKGIDNGKTDIFIENLPGGPDNINLAPDGSFWIALVQLTSKRLGFVHTSIVCKHLLASFP 304

Query: 241 R 241
           R
Sbjct: 305 R 305

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255550417|ref|XP_002516259.1| Adipocyte plasma membrane-associated protein, putative [Ricinus communis] gi|223544745|gb|EEF46261.1| Adipocyte plasma membrane-associated protein, putative [Ricinus communis]

 Score =  290 bits (742), Expect = 3e-76,   Method: Compositional matrix adjust.
 Identities = 135/241 (56%), Positives = 180/241 (74%), Gaps = 1/241 (0%)

Query: 1   MIKLGEGIVNHPEDVSVDGNGVLYTATGDGWIKRMHPNGTWEDWHQVGSQSLLGLTTTKE 60
           +IKLGEG +  PEDV +D +GVLYTA  D WIKRMH NG+WE+W ++ S +LLG+  +KE
Sbjct: 51  VIKLGEGFIQGPEDVCMDKDGVLYTAVRDKWIKRMHKNGSWENWKRIDSDALLGIAPSKE 110

Query: 61  NNVIIVCDSQQGLLKVSEEGVTVLVSQFNGSQLRFANDVIEASDGSLYFTVSSTKFTPAE 120
              +IVCD+  GLLKV+E+GVTVL S+ NGS+++FA+D IE+SDG++YF+V STKF    
Sbjct: 111 GG-LIVCDADTGLLKVTEDGVTVLASEVNGSKIKFADDAIESSDGNIYFSVPSTKFGLHN 169

Query: 121 YYLDLVSGEPHGVLLKYDPSTNQTSLVLDGLYFANGVALSEDERFLVVCESWKFRCVKHF 180
           +YLD++   PHG LLKYDP++NQTS++LDGL F NGVALS +E +LV CESWKFRC KH+
Sbjct: 170 WYLDVLEARPHGQLLKYDPTSNQTSVLLDGLCFPNGVALSWEEDYLVFCESWKFRCQKHW 229

Query: 181 LKVSGRTDREIFIDNLPGGPDNVNLARDGSFWISIIKMDPKGIQALQSCKERKQAVGSIS 240
           LK   +   E  IDNLPG PDN+NLA DGSFWI ++++   G++ + + K  K  V S  
Sbjct: 230 LKGEDKGKTETLIDNLPGAPDNINLAPDGSFWICLLQVAADGLEFVHTSKASKHLVASFP 289

Query: 241 R 241
           +
Sbjct: 290 K 290

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357450077|ref|XP_003595315.1| Adipocyte plasma membrane-associated protein [Medicago truncatula] gi|355484363|gb|AES65566.1| Adipocyte plasma membrane-associated protein [Medicago truncatula]

 Score =  290 bits (742), Expect = 3e-76,   Method: Compositional matrix adjust.
 Identities = 138/241 (57%), Positives = 182/241 (75%), Gaps = 1/241 (0%)

Query: 1   MIKLGEGIVNHPEDVSVDGNGVLYTATGDGWIKRMHPNGTWEDWHQVGSQSLLGLTTTKE 60
           +IKLGEG +  PEDV VD +GVLYTAT DGWIKRM  N  WE+W  + S SLLG+TT+K+
Sbjct: 47  VIKLGEGFLKQPEDVCVDKDGVLYTATRDGWIKRMVRNENWENWKHIDSSSLLGITTSKD 106

Query: 61  NNVIIVCDSQQGLLKVSEEGVTVLVSQFNGSQLRFANDVIEASDGSLYFTVSSTKFTPAE 120
              +IVCD+  GLLKV+E+G +V++SQ NGSQL FA+D+IEASDG++YF+V STKF    
Sbjct: 107 GG-LIVCDTTLGLLKVTEDGFSVILSQVNGSQLIFADDIIEASDGNIYFSVPSTKFGLHN 165

Query: 121 YYLDLVSGEPHGVLLKYDPSTNQTSLVLDGLYFANGVALSEDERFLVVCESWKFRCVKHF 180
           +YLD++   PHG LL+Y+P +N+T +VLD L FANGVALS+DE +LVVCE+WKFRC+KH+
Sbjct: 166 WYLDVLEARPHGQLLRYNPLSNETVIVLDHLAFANGVALSKDEDYLVVCETWKFRCLKHW 225

Query: 181 LKVSGRTDREIFIDNLPGGPDNVNLARDGSFWISIIKMDPKGIQALQSCKERKQAVGSIS 240
           LK   +   EIFI+NLP GPDN+NLA DGSFWI++I++  + +  + + K  K  V    
Sbjct: 226 LKGINKGKTEIFIENLPAGPDNINLAPDGSFWIALIQVTSERMGFVHTSKVSKHLVALFP 285

Query: 241 R 241
           R
Sbjct: 286 R 286

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|388492006|gb|AFK34069.1| unknown [Medicago truncatula]

 Score =  290 bits (741), Expect = 4e-76,   Method: Compositional matrix adjust.
 Identities = 139/241 (57%), Positives = 182/241 (75%), Gaps = 1/241 (0%)

Query: 1   MIKLGEGIVNHPEDVSVDGNGVLYTATGDGWIKRMHPNGTWEDWHQVGSQSLLGLTTTKE 60
           +IKLGEG +  PEDV VD +GVLYTAT DGWIKRM  N  WE+W  V S SLLG+TT+K+
Sbjct: 47  VIKLGEGFLKQPEDVCVDKDGVLYTATRDGWIKRMVRNENWENWKHVDSSSLLGITTSKD 106

Query: 61  NNVIIVCDSQQGLLKVSEEGVTVLVSQFNGSQLRFANDVIEASDGSLYFTVSSTKFTPAE 120
              +IVCD+  GLLKV+E+G +V++SQ NGSQL FA+D+IEASDG++YF+V STKF    
Sbjct: 107 GG-LIVCDTTLGLLKVTEDGFSVILSQVNGSQLIFADDIIEASDGNIYFSVPSTKFGLHN 165

Query: 121 YYLDLVSGEPHGVLLKYDPSTNQTSLVLDGLYFANGVALSEDERFLVVCESWKFRCVKHF 180
           +YLD++   PHG LL+Y+P +N+T +VLD L FANGVALS+DE +LVVCE+WKFRC+KH+
Sbjct: 166 WYLDVLEARPHGQLLRYNPLSNETVIVLDHLAFANGVALSKDEDYLVVCETWKFRCLKHW 225

Query: 181 LKVSGRTDREIFIDNLPGGPDNVNLARDGSFWISIIKMDPKGIQALQSCKERKQAVGSIS 240
           LK   +   EIFI+NLP GPDN+NLA DGSFWI++I++  + +  + + K  K  V    
Sbjct: 226 LKGINKGKTEIFIENLPAGPDNINLAPDGSFWIALIQVTSERMGFVHTSKVSKYLVALFP 285

Query: 241 R 241
           R
Sbjct: 286 R 286

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	243
TAIR|locus:2081830	370	SSL4 "strictosidine synthase-l	0.851	0.559	0.364	5.1e-35
TAIR|locus:2081845	371	YLS2 "YELLOW-LEAF-SPECIFIC GEN	0.851	0.557	0.373	1.3e-34
TAIR|locus:2081860	371	AT3G51440 [Arabidopsis thalian	0.880	0.576	0.372	2.8e-34
TAIR|locus:2081875	371	AT3G51450 [Arabidopsis thalian	0.880	0.576	0.354	2.5e-33
TAIR|locus:2097488	403	LAP3 "LESS ADHERENT POLLEN 3"	0.720	0.434	0.385	2.8e-27
TAIR|locus:2201841	390	SSL3 "strictosidine synthase-l	0.666	0.415	0.363	2e-24
UNIPROTKB|E2RPE9	415	APMAP "Uncharacterized protein	0.917	0.537	0.324	8.8e-24
TAIR|locus:2080565	370	AT3G57020 [Arabidopsis thalian	0.843	0.554	0.328	1.1e-23
UNIPROTKB|Q5ZIF1	415	APMAP "Adipocyte plasma membra	0.925	0.542	0.318	3.5e-23
UNIPROTKB|Q3T0E5	412	APMAP "Adipocyte plasma membra	0.917	0.541	0.324	4.2e-23

TAIR|locus:2081830 SSL4 "strictosidine synthase-like 4" [Arabidopsis thaliana (taxid:3702)]

 Score = 379 (138.5 bits), Expect = 5.1e-35, P = 5.1e-35
 Identities = 81/222 (36%), Positives = 131/222 (59%)

Query:     4 LGEGIVNHPEDVSV--DGNGVLYTATGDGWIKRM--HPNGT---WEDWHQVGSQSLLGLT 56
             +G G++N+PED++   D N ++YT   DGW+KR+  H +      EDW   G + L G+ 
Sbjct:    62 IGVGLLNNPEDIAYHKDSN-LIYTGCVDGWVKRVSVHDSANDSIVEDWVNTGGRPL-GIA 119

Query:    57 TTKENNVIIVCDSQQGLLKVSEEG--VTVLVSQFNGSQLRFANDVIEASDGSLYFTVSST 114
                   VI V D+ +GLL +S+ G    +L  + +G + +  + V  A +G LYFT +S+
Sbjct:   120 FGLHGEVI-VADANKGLLSISDGGKKTELLTDEADGVRFKLTDAVTVADNGVLYFTDASS 178

Query:   115 KFTPAEYYLDLVSGEPHGVLLKYDPSTNQTSLVLDGLYFANGVALSEDERFLVVCESWKF 174
             K+   ++  D + G+PHG ++ +DP+T  T ++L  LYFANG+++S D+   V CE+   
Sbjct:   179 KYDFYQFIFDFLEGKPHGRVMSFDPTTRATRVLLKDLYFANGISMSPDQTHFVFCETIMR 238

Query:   175 RCVKHFLKVSGRTDREIFIDNLPGGPDNVNLARDGSFWISII 216
             RC K+++    R   E+FI  LPG PDN+    DG +WI++I
Sbjct:   239 RCSKYYISEE-RV--EVFIQGLPGYPDNIRYDGDGHYWIALI 277

GO:0009058 "biosynthetic process" evidence=IEA

GO:0009507 "chloroplast" evidence=ISM

GO:0009821 "alkaloid biosynthetic process" evidence=ISS

GO:0016844 "strictosidine synthase activity" evidence=IEA;ISS;TAS

GO:0009902 "chloroplast relocation" evidence=RCA

GO:0009965 "leaf morphogenesis" evidence=RCA

GO:0010155 "regulation of proton transport" evidence=RCA

GO:0030154 "cell differentiation" evidence=RCA

GO:0045893 "positive regulation of transcription, DNA-dependent" evidence=RCA

GO:0046777 "protein autophosphorylation" evidence=RCA

TAIR|locus:2081845 YLS2 "YELLOW-LEAF-SPECIFIC GENE 2" [Arabidopsis thaliana (taxid:3702)]

 Score = 375 (137.1 bits), Expect = 1.3e-34, P = 1.3e-34
 Identities = 83/222 (37%), Positives = 130/222 (58%)

Query:     4 LGEGIVNHPEDVSV--DGNGVLYTATGDGWIKRM--HPNGT---WEDWHQVGSQSLLGLT 56
             +G G+++ PED++   D N ++YT   DGW+KR+  H +      EDW   G + L G+ 
Sbjct:    62 IGVGLLDKPEDIAYHQDSN-LIYTGCIDGWVKRVSVHDSANDSVVEDWVNTGGRPL-GIA 119

Query:    57 TTKENNVIIVCDSQQGLLKVSEEG--VTVLVSQFNGSQLRFANDVIEASDGSLYFTVSST 114
                   VI V D+ +GLL +S +G    +L  Q  G + +  + V  A +G LYFT +S 
Sbjct:   120 FGVHGEVI-VADAYKGLLNISGDGKKTELLTDQAEGVKFKLTDVVAVADNGVLYFTDASY 178

Query:   115 KFTPAEYYLDLVSGEPHGVLLKYDPSTNQTSLVLDGLYFANGVALSEDERFLVVCESWKF 174
             K+T  +   D++ G+PHG L+ +DP+T  T ++L  LYFANGV++S D+  L+ CE+   
Sbjct:   179 KYTLHQVKFDILEGKPHGRLMSFDPTTRVTRVLLKDLYFANGVSMSPDQTHLIFCETPMR 238

Query:   175 RCVKHFLKVSGRTDREIFIDNLPGGPDNVNLARDGSFWISII 216
             RC K+++    R   E+FI  LPG PDN+    DG +WI+++
Sbjct:   239 RCSKYYINEE-RV--EVFIQGLPGYPDNIRYDGDGHYWIAMV 277

GO:0009058 "biosynthetic process" evidence=IEA

GO:0009507 "chloroplast" evidence=ISM

GO:0009821 "alkaloid biosynthetic process" evidence=ISS

GO:0016844 "strictosidine synthase activity" evidence=IEA;ISS;TAS

GO:0005783 "endoplasmic reticulum" evidence=IDA

TAIR|locus:2081860 AT3G51440 [Arabidopsis thaliana (taxid:3702)]

 Score = 372 (136.0 bits), Expect = 2.8e-34, P = 2.8e-34
 Identities = 86/231 (37%), Positives = 133/231 (57%)

Query:     4 LGEGIVNHPEDVSV-DGNGVLYTATGDGWIKRMHP----NGTW-EDWHQVGSQSLLGLTT 57
             +G G++N PED++  + +G +YT   DGW+KR+      N +  ED    G + L G+  
Sbjct:    62 IGVGLLNSPEDIAYHEDSGFIYTGCVDGWVKRVKVAESVNDSLVEDLVNTGGRPL-GIAF 120

Query:    58 TKENNVIIVCDSQQGLLKVSEEG--VTVLVSQFNGSQLRFANDVIEASDGSLYFTVSSTK 115
                  VI V D+ +GLL +S +G    +L  + +G + +  + V  A +G LYFT  S K
Sbjct:   121 GIHGEVI-VADAYKGLLNISGDGKKTELLTEEADGVRFKLPDAVTVADNGVLYFTDGSYK 179

Query:   116 FTPAEYYLDLVSGEPHGVLLKYDPSTNQTSLVLDGLYFANGVALSEDERFLVVCESWKFR 175
             +   ++  D++ G+PHG L+ +DP+T  T ++L  LYFANGV+LS D+  LV CE+   R
Sbjct:   180 YNLHQFSFDILEGKPHGRLMSFDPTTKVTRVLLRDLYFANGVSLSPDQTHLVFCETPIRR 239

Query:   176 CVKHFLKVSGRTDREIFIDNLPGGPDNVNLARDGSFWISIIKMDPKGIQAL 226
             C K+++   GR   E+FI  LPG PDN+    DG +WI++    P G+  L
Sbjct:   240 CSKYYIN-GGRV--ELFIQGLPGYPDNIRYDGDGHYWIAM----PSGVTTL 283

GO:0005576 "extracellular region" evidence=ISM

GO:0009058 "biosynthetic process" evidence=IEA

GO:0009821 "alkaloid biosynthetic process" evidence=ISS

GO:0016844 "strictosidine synthase activity" evidence=IEA;ISS;TAS

GO:0005783 "endoplasmic reticulum" evidence=IDA

TAIR|locus:2081875 AT3G51450 [Arabidopsis thaliana (taxid:3702)]

 Score = 363 (132.8 bits), Expect = 2.5e-33, P = 2.5e-33
 Identities = 82/231 (35%), Positives = 130/231 (56%)

Query:     4 LGEGIVNHPEDVSVDG-NGVLYTATGDGWIKRMHP-----NGTWEDWHQVGSQSLLGLTT 57
             +G G++N PED++    + ++YT   DGW+KR+       +   EDW   G + L G+  
Sbjct:    62 IGVGLLNIPEDIAYHKESNLIYTGCVDGWVKRVKVADSVNDSVVEDWVNTGGRPL-GIAF 120

Query:    58 TKENNVIIVCDSQQGLLKVSEEG--VTVLVSQFNGSQLRFANDVIEASDGSLYFTVSSTK 115
                  VI V D  +GLL +S +G    +L  + +G + +  + V  A +G LYFT +S K
Sbjct:   121 GIHGEVI-VADVHKGLLNISGDGKKTELLTDEADGVKFKLTDAVTVADNGVLYFTDASYK 179

Query:   116 FTPAEYYLDLVSGEPHGVLLKYDPSTNQTSLVLDGLYFANGVALSEDERFLVVCESWKFR 175
             +T  +  LD++ G+P G LL +DP+T  T ++L  LYFANG+ +S D+  L+ CE+   R
Sbjct:   180 YTLNQLSLDMLEGKPFGRLLSFDPTTRVTKVLLKDLYFANGITISPDQTHLIFCETPMKR 239

Query:   176 CVKHFLKVSGRTDREIFIDNLPGGPDNVNLARDGSFWISIIKMDPKGIQAL 226
             C K+++    R   E+F  +LPG PDN+    DG +WI++    P G+  L
Sbjct:   240 CSKYYISEE-RV--EVFTQSLPGYPDNIRYDGDGHYWIAL----PSGVTTL 283

GO:0009058 "biosynthetic process" evidence=IEA

GO:0009507 "chloroplast" evidence=ISM

GO:0009821 "alkaloid biosynthetic process" evidence=ISS

GO:0016844 "strictosidine synthase activity" evidence=IEA;ISS;TAS

GO:0009611 "response to wounding" evidence=RCA

GO:0009620 "response to fungus" evidence=RCA

GO:0009694 "jasmonic acid metabolic process" evidence=RCA

GO:0009695 "jasmonic acid biosynthetic process" evidence=RCA

GO:0009753 "response to jasmonic acid stimulus" evidence=RCA

TAIR|locus:2097488 LAP3 "LESS ADHERENT POLLEN 3" [Arabidopsis thaliana (taxid:3702)]

 Score = 306 (112.8 bits), Expect = 2.8e-27, P = 2.8e-27
 Identities = 69/179 (38%), Positives = 103/179 (57%)

Query:    40 TWEDW-HQVGSQSLLGLTTTKENNVIIVCDSQQGLLKVSEEG--VTVLVSQFNGSQLRFA 96
             T + W H+      LGL   KE   + + D+  GLL V  EG   T L +   G  + FA
Sbjct:   139 TNKQWKHEKLCGRPLGLRFHKETGNLYIADAYYGLLVVGPEGGIATPLATHVEGKPILFA 198

Query:    97 NDVIEASDGSLYFTVSSTKFTPAEYYLDLVSGEPHGVLLKYDPSTNQTSLVLDGLYFANG 156
             ND+    +GS++FT +S ++  A ++  L+ GE  G LL+YDP T  T +VL+GL F NG
Sbjct:   199 NDLDIHRNGSIFFTDTSKRYDRANHFFILLEGESTGRLLRYDPPTKTTHIVLEGLAFPNG 258

Query:   157 VALSEDERFLVVCESWKFRCVKHFLKVSGRTDREIFIDNLPGGPDNVNLARDGSFWISI 215
             + LS+D+ FL+  E+   R VK++L+     + E+  D LPG PDNV +  +G FW++I
Sbjct:   259 IQLSKDQSFLLFTETTNCRLVKYWLEGPKMGEVEVVAD-LPGFPDNVRINEEGQFWVAI 316

GO:0005739 "mitochondrion" evidence=ISM

GO:0009058 "biosynthetic process" evidence=IEA

GO:0009821 "alkaloid biosynthetic process" evidence=ISS

GO:0010584 "pollen exine formation" evidence=RCA;IMP

GO:0016844 "strictosidine synthase activity" evidence=IEA;ISS;TAS

GO:0009827 "plant-type cell wall modification" evidence=RCA

GO:0009860 "pollen tube growth" evidence=RCA

TAIR|locus:2201841 SSL3 "strictosidine synthase-like 3" [Arabidopsis thaliana (taxid:3702)]

 Score = 279 (103.3 bits), Expect = 2.0e-24, P = 2.0e-24
 Identities = 60/165 (36%), Positives = 97/165 (58%)

Query:    53 LGLTTTKENNVIIVCDSQQGLLKVSEEG--VTVLVSQFNGSQLRFANDVIEASDGSLYFT 110
             LGL   K+N  + + D+  G++KV  EG   T + ++ +G  LRF ND+    +G++YFT
Sbjct:   133 LGLRFDKKNGDLYIADAYLGIMKVGPEGGLATSVTNEADGVPLRFTNDLDIDDEGNVYFT 192

Query:   111 VSSTKFTPAEYYLDLVSGEPHGVLLKYDPSTNQTSLVLDGLYFANGVALSEDERFLVVCE 170
              SS+ F   ++ L +VSGE  G +LKY+P T +T+ ++  L F NG++L +D  F + CE
Sbjct:   193 DSSSFFQRRKFMLLIVSGEDSGRVLKYNPKTKETTTLVRNLQFPNGLSLGKDGSFFIFCE 252

Query:   171 SWKFRCVKHFLKVSGRTDREIFIDNLPGGPDNVNLARDGSFWISI 215
                 R  K++LK       E+ +  L G PDN+   +DG FW+++
Sbjct:   253 GSIGRLRKYWLKGEKAGTSEV-VALLHGFPDNIRTNKDGDFWVAV 296

GO:0009058 "biosynthetic process" evidence=IEA

GO:0009507 "chloroplast" evidence=ISM

GO:0009821 "alkaloid biosynthetic process" evidence=ISS

GO:0016844 "strictosidine synthase activity" evidence=IEA;ISS;TAS

GO:0005783 "endoplasmic reticulum" evidence=IDA

GO:0005774 "vacuolar membrane" evidence=IDA

UNIPROTKB|E2RPE9 APMAP "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]

 Score = 274 (101.5 bits), Expect = 8.8e-24, P = 8.8e-24
 Identities = 82/253 (32%), Positives = 132/253 (52%)

Query:     3 KLGEGIVNHPEDVSVDGNGVLYTATGDGWIKRMH-------------PNGTWEDWHQVGS 49
             +L E  +  PE ++  G+ V++T T DG + ++              P  T +D    G 
Sbjct:    92 RLFENQLIGPESIANIGD-VMFTGTADGRLVKLENGEVETIARFGSGPCKTRDDEPACGR 150

Query:    50 QSLLGLTTTKENNVIIVCDSQQGLLKVS--EEGVTVLVSQ---FNGSQLRFANDVIEASD 104
               LLG+     N  + V D+ +GL +V+  +  V +LVS      G ++ F ND+    D
Sbjct:   151 --LLGIRAGP-NGTLFVADAYKGLFEVNPWKREVKLLVSSEIPIEGRKMSFVNDLTITQD 207

Query:   105 GS-LYFTVSSTKFTPAEYYLDLVSGEPHGVLLKYDPSTNQTSLVLDGLYFANGVALSEDE 163
             G  +YFT SS+K+   +Y L ++ G   G LL+YD  T +  ++LD L F NGV LS +E
Sbjct:   208 GKKIYFTDSSSKWQRRDYLLLVMEGTDDGRLLEYDMETKEVKVLLDQLRFPNGVQLSPEE 267

Query:   164 RFLVVCESWKFRCVKHFLKVSG--RTDREIFIDNLPGGPDNVNLARDGSFWISI--IKMD 219
              F++V E+   R ++ F  VSG  +   ++F++NLPG PDN+  +  G +W+ +  I+ +
Sbjct:   268 DFVLVAETTMAR-IRRFY-VSGLMKGGADLFVENLPGFPDNIRPSSSGGYWVGMATIRSN 325

Query:   220 PKGIQALQSCKER 232
             P G   L    ER
Sbjct:   326 P-GFSMLDFLSER 337

GO:0016020 "membrane" evidence=IEA

GO:0009986 "cell surface" evidence=IEA

GO:0004064 "arylesterase activity" evidence=IEA

GO:0016844 "strictosidine synthase activity" evidence=IEA

GO:0009058 "biosynthetic process" evidence=IEA

TAIR|locus:2080565 AT3G57020 [Arabidopsis thaliana (taxid:3702)]

 Score = 272 (100.8 bits), Expect = 1.1e-23, P = 1.1e-23
 Identities = 72/219 (32%), Positives = 110/219 (50%)

Query:     5 GEGIVNHPEDVSVDGNGVLYTATGDGWIKRMH--PN-GTWEDWHQVGSQSL-LGLTTTKE 60
             GEG    P    VDG  + +     GW+   +  P+ G       V +    LGLT  K+
Sbjct:    63 GEG----PYAAVVDGRILKWRGDDLGWVDFAYTSPHRGNCSKTEVVPTCGRPLGLTFEKK 118

Query:    61 NNVIIVCDSQQGLLKVSEEG--VTVLVSQFNGSQLRFAN--DVIEASDGSLYFTVSSTKF 116
                + +CD   GL+KV  EG    ++V +  G ++ FAN  D+ E  D   YF  SS K+
Sbjct:   119 TGDLYICDGYLGLMKVGPEGGLAELIVDEAEGRKVMFANQGDIDEEED-VFYFNDSSDKY 177

Query:   117 TPAEYYLDLVSGEPHGVLLKYDPSTNQTSLVLDGLYFANGVALSEDERFLVVCESWKFRC 176
                + +   VSGE  G +++YD  T +  +++D L   NG+AL++D  FL+ CES     
Sbjct:   178 HFRDVFFVAVSGERSGRVIRYDKKTKEAKVIMDNLVCNNGLALNKDRSFLITCESGTSLV 237

Query:   177 VKHFLKVSGRTDREIFIDNLPGGPDNVNLARDGSFWISI 215
              ++++K      R+IF   +PG PDN+ L   G FWI +
Sbjct:   238 HRYWIKGPKAGTRDIFA-KVPGYPDNIRLTSTGDFWIGL 275

GO:0009058 "biosynthetic process" evidence=IEA

GO:0009507 "chloroplast" evidence=ISM

GO:0009821 "alkaloid biosynthetic process" evidence=ISS

GO:0016844 "strictosidine synthase activity" evidence=IEA;ISS;TAS

GO:0005773 "vacuole" evidence=IDA

GO:0005783 "endoplasmic reticulum" evidence=IDA

GO:0009744 "response to sucrose stimulus" evidence=RCA

GO:0009813 "flavonoid biosynthetic process" evidence=RCA

GO:0010224 "response to UV-B" evidence=RCA

UNIPROTKB|Q5ZIF1 APMAP "Adipocyte plasma membrane-associated protein" [Gallus gallus (taxid:9031)]

 Score = 269 (99.8 bits), Expect = 3.5e-23, P = 3.5e-23
 Identities = 80/251 (31%), Positives = 130/251 (51%)

Query:     3 KLGEGIVNHPEDVSVDGNGVLYTATGDGWIKRM------------H-PNGTWEDWHQVGS 49
             +L E  +  PE + V+   VL+T T DG I ++            H P GT ED    G 
Sbjct:    92 RLWENQLVGPESI-VNIGDVLFTGTADGKILKIEDGEVQTVARIGHGPCGTPEDEPTCGR 150

Query:    50 QSLLGLTTTKENNVIIVCDSQQGLLKVSE-EGVT-VLVSQ---FNGSQLRFANDVIEASD 104
                LG+     NN + V D+  GL +V+   G T +LVS      G +L F ND+    D
Sbjct:   151 P--LGIRVGP-NNTLFVADAYYGLYEVNPGTGETKMLVSTKTLIEGQKLSFLNDLTVTQD 207

Query:   105 G-SLYFTVSSTKFTPAEYYLDLVSGEPHGVLLKYDPSTNQTSLVLDGLYFANGVALSEDE 163
             G  +YFT SS+K+   ++   ++ G   G LL+YD  T +  +++ GL F NGV LS  E
Sbjct:   208 GRKIYFTDSSSKWQRRDFLFLVMEGTDDGRLLEYDTVTKEVKVLMVGLRFPNGVQLSPAE 267

Query:   164 RFLVVCESWKFRCVKHFLKVSGRTDREIFIDNLPGGPDNVNLARDGSFWIS--IIKMDPK 221
              F++V E+   R  ++++    +   ++F++N+PG PDN+ L+  G +W++  +++ +P 
Sbjct:   268 DFVLVLETAMARIRRYYVSGLMKGGADMFVENMPGLPDNIRLSSSGGYWVAMPVVRPNP- 326

Query:   222 GIQALQSCKER 232
             G   L    E+
Sbjct:   327 GFSMLDFLSEK 337

GO:0009058 "biosynthetic process" evidence=IEA

GO:0016844 "strictosidine synthase activity" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

GO:0004064 "arylesterase activity" evidence=IEA

GO:0009986 "cell surface" evidence=IEA

UNIPROTKB|Q3T0E5 APMAP "Adipocyte plasma membrane-associated protein" [Bos taurus (taxid:9913)]

 Score = 268 (99.4 bits), Expect = 4.2e-23, P = 4.2e-23
 Identities = 82/253 (32%), Positives = 130/253 (51%)

Query:     3 KLGEGIVNHPEDVSVDGNGVLYTATGDGWIKRMH-------------PNGTWEDWHQVGS 49
             +L E  +  PE ++  G+ V++T T DG + ++              P  T +D    G 
Sbjct:    92 RLFENQLVGPESIANIGD-VMFTGTADGRVVKLENGEVETIARFGSGPCKTRDDEPACGR 150

Query:    50 QSLLGLTTTKENNVIIVCDSQQGLLKVS--EEGVTVLVSQ---FNGSQLRFANDVIEASD 104
                LG+     N  + V D+ +GL +V+  +  V +L+S      G ++ F ND+    D
Sbjct:   151 P--LGIRAGP-NGTLFVVDAYKGLFEVNPWKREVKLLLSSETPIEGRKMSFLNDLTVTRD 207

Query:   105 G-SLYFTVSSTKFTPAEYYLDLVSGEPHGVLLKYDPSTNQTSLVLDGLYFANGVALSEDE 163
             G  +YFT SS+K+   +Y L L+ G   G LL+YD  T +  ++LD L F NGV LS  E
Sbjct:   208 GRKIYFTDSSSKWQRRDYLLLLMEGTDDGRLLEYDTQTKEVKVLLDHLRFPNGVQLSPAE 267

Query:   164 RFLVVCESWKFRCVKHFLKVSG--RTDREIFIDNLPGGPDNVNLARDGSFWISI--IKMD 219
              F++V E    R ++ F  VSG  +   ++F++NLPG PDN+  +  G +W+S+  I+ +
Sbjct:   268 DFVLVVELAMVR-IRRFY-VSGLMKGGADVFVENLPGFPDNIRASSSGGYWVSMAAIRAN 325

Query:   220 PKGIQALQSCKER 232
             P G   L    ER
Sbjct:   326 P-GFSMLDFLSER 337

GO:0009986 "cell surface" evidence=IEA

GO:0004064 "arylesterase activity" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

GO:0016844 "strictosidine synthase activity" evidence=IEA

GO:0009058 "biosynthetic process" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

Prediction Level	EC number	Confidence of Prediction
3rd Layer	3.1.1	LOW CONFIDENCE prediction!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	243
COG3386	307	COG3386, COG3386, Gluconolactonase [Carbohydrate t	9e-26
pfam03088	89	pfam03088, Str_synth, Strictosidine synthase	2e-24
pfam08450	245	pfam08450, SGL, SMP-30/Gluconolaconase/LRE-like re	6e-13

>gnl|CDD|225921 COG3386, COG3386, Gluconolactonase [Carbohydrate transport and metabolism]

 Score =  102 bits (255), Expect = 9e-26
 Identities = 56/217 (25%), Positives = 83/217 (38%), Gaps = 19/217 (8%)

Query: 4   LGEGIVNHPEDVSVDGNGVLYTATGDGWIKRMHP-NGTWEDWHQVGSQSLLGLTTTKENN 62
           LGEG V  P     D   +L+     G I R+ P  G    +   G  S   L       
Sbjct: 26  LGEGPVWDP-----DRGALLWVDILGGRIHRLDPETGKKRVFPSPGGFSSGALIDAGGR- 79

Query: 63  VIIVCDSQQGLLKVSEEG-VTVLVSQFNGSQLRFANDVIEASDGSLYFTVSSTKFTPAEY 121
            +I C+    LL     G +T+L    +G  L   ND +   DG ++F           +
Sbjct: 80  -LIACEHGVRLLDPDTGGKITLLAEPEDGLPLNRPNDGVVDPDGRIWFG------DMGYF 132

Query: 122 YLDLVSGEPHGVLLKYDPSTNQTSLVLDGLYFANGVALSEDERFLVVCESWKFRCVK-HF 180
            L      P G L + DP      L+ D L   NG+A S D + L V ++   R  +   
Sbjct: 133 DLGKSEERPTGSLYRVDPDGGVVRLLDDDLTIPNGLAFSPDGKTLYVADTPANRIHRYDL 192

Query: 181 LKVSGRTD---REIFIDNLPGGPDNVNLARDGSFWIS 214
              +G        +  D  PG PD + +  DG+ W++
Sbjct: 193 DPATGPIGGRRGFVDFDEEPGLPDGMAVDADGNLWVA 229

Length = 307

>gnl|CDD|111929 pfam03088, Str_synth, Strictosidine synthase

 Score = 92.8 bits (231), Expect = 2e-24
 Identities = 35/85 (41%), Positives = 52/85 (61%), Gaps = 1/85 (1%)

Query: 98  DVIEASDGSLYFTVSSTKFTPAEYYLDLVSGEPHGVLLKYDPSTNQTSLVLDGLYFANGV 157
           DV     G LYFT SS+++   +    ++ G+  G L+KYDPST  T ++L  LYF NG+
Sbjct: 4   DVDP-ETGVLYFTDSSSRYDRRQVIFAMLEGDKTGRLMKYDPSTKVTKVLLKDLYFPNGI 62

Query: 158 ALSEDERFLVVCESWKFRCVKHFLK 182
           ALS D  F++ CE+   R  K+++K
Sbjct: 63  ALSPDGSFVLFCETPMKRISKYWIK 87

Strictosidine synthase (E.C. 4.3.3.2) is a key enzyme in alkaloid biosynthesis. It catalyzes the condensation of tryptamine with secologanin to form strictosidine. Length = 89

>gnl|CDD|219847 pfam08450, SGL, SMP-30/Gluconolaconase/LRE-like region

 Score = 65.7 bits (161), Expect = 6e-13
 Identities = 60/232 (25%), Positives = 91/232 (39%), Gaps = 32/232 (13%)

Query: 4   LGEGIVNHPEDVSVDGNGVLY-TATGDGWIKRMHP-NGTWEDWHQVGSQSLLGLTTTKEN 61
           LGEG V   E+      G LY      G I R+ P  G    W   G    + L    + 
Sbjct: 1   LGEGPVWDEEE------GALYWVDILGGRIHRLDPATGKETVWDLPGPVGAIALR--DDG 52

Query: 62  NVIIVCDSQQGLLKVSEEGVTVLVSQFNG-SQLRFANDVIEASDGSLYFTVSSTKFTPAE 120
            +I+       LL +    +T L          RF ND     DG  +F       T   
Sbjct: 53  RLIVALKRGLALLDLDTGELTTLADLEPDEPLNRF-NDGKVDPDGRFWFG------TMGF 105

Query: 121 YYLDLVSGEPHGVLLKYDPSTNQTSLVLDGLYFANGVALSEDERFLVVCESWKFRCVK-H 179
              D+  G   G L + DP   +   VLDG+  +NG+A S D + L   +S   R     
Sbjct: 106 ---DIAPGGEPGALYRLDPDG-KVERVLDGITISNGLAWSPDGKTLYFADSPTRRIWAFD 161

Query: 180 FLKVSGR-TDREIFID--NLPGGPDNVNLARDGSFWIS------IIKMDPKG 222
           +    G  ++R +F D  +  G PD + +  +G+ W++      +++ DP G
Sbjct: 162 YDADGGLISNRRVFADFKDGDGEPDGMAVDAEGNVWVARWGGGKVVRYDPDG 213

This family describes a region that is found in proteins expressed by a variety of eukaryotic and prokaryotic species. These proteins include various enzymes, such as senescence marker protein 30 (SMP-30), gluconolactonase and luciferin-regenerating enzyme (LRE). SMP-30 is known to hydrolyse diisopropyl phosphorofluoridate in the liver, and has been noted as having sequence similarity, in the region described in this family, with PON1 and LRE. Length = 245

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	243
KOG1520	376	consensus Predicted alkaloid synthase/Surface muci	99.95
PF08450	246	SGL: SMP-30/Gluconolaconase/LRE-like region; Inter	99.94
COG3386	307	Gluconolactonase [Carbohydrate transport and metab	99.93
COG4257	353	Vgb Streptogramin lyase [Defense mechanisms]	99.77
COG4257	353	Vgb Streptogramin lyase [Defense mechanisms]	99.73
PLN02919	1057	haloacid dehalogenase-like hydrolase family protei	99.72
PLN02919	1057	haloacid dehalogenase-like hydrolase family protei	99.66
PF10282	345	Lactonase: Lactonase, 7-bladed beta-propeller; Int	99.6
PF08450	246	SGL: SMP-30/Gluconolaconase/LRE-like region; Inter	99.59
PF03088	89	Str_synth: Strictosidine synthase; InterPro: IPR01	99.58
KOG4499	310	consensus Ca2+-binding protein Regucalcin/SMP30 [I	99.56
TIGR02604	367	Piru_Ver_Nterm putative membrane-bound dehydrogena	99.56
PF10282	345	Lactonase: Lactonase, 7-bladed beta-propeller; Int	99.53
PRK11028	330	6-phosphogluconolactonase; Provisional	99.45
COG2706	346	3-carboxymuconate cyclase [Carbohydrate transport	99.44
PRK11028	330	6-phosphogluconolactonase; Provisional	99.41
COG3386	307	Gluconolactonase [Carbohydrate transport and metab	99.4
PF07995	331	GSDH: Glucose / Sorbosone dehydrogenase; InterPro:	99.35
COG2706	346	3-carboxymuconate cyclase [Carbohydrate transport	99.33
COG3391	381	Uncharacterized conserved protein [Function unknow	99.19
TIGR03866	300	PQQ_ABC_repeats PQQ-dependent catabolism-associate	99.17
TIGR02604	367	Piru_Ver_Nterm putative membrane-bound dehydrogena	99.15
PF06977	248	SdiA-regulated: SdiA-regulated; InterPro: IPR00972	99.1
TIGR03606	454	non_repeat_PQQ dehydrogenase, PQQ-dependent, s-GDH	99.05
TIGR03866	300	PQQ_ABC_repeats PQQ-dependent catabolism-associate	99.05
COG3391	381	Uncharacterized conserved protein [Function unknow	99.01
KOG4659	1899	consensus Uncharacterized conserved protein (Rhs f	98.99
PF02239	369	Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO	98.89
PF02239	369	Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO	98.81
PF03022	287	MRJP: Major royal jelly protein; InterPro: IPR0035	98.77
KOG1214	1289	consensus Nidogen and related basement membrane pr	98.76
PRK04792	448	tolB translocation protein TolB; Provisional	98.76
TIGR02658	352	TTQ_MADH_Hv methylamine dehydrogenase heavy chain.	98.74
PF03022	287	MRJP: Major royal jelly protein; InterPro: IPR0035	98.72
PRK05137	435	tolB translocation protein TolB; Provisional	98.71
KOG0291	893	consensus WD40-repeat-containing subunit of the 18	98.71
PRK04922	433	tolB translocation protein TolB; Provisional	98.69
PRK02889	427	tolB translocation protein TolB; Provisional	98.69
PRK03629	429	tolB translocation protein TolB; Provisional	98.67
COG3292	671	Predicted periplasmic ligand-binding sensor domain	98.64
COG3292	671	Predicted periplasmic ligand-binding sensor domain	98.63
PRK00178	430	tolB translocation protein TolB; Provisional	98.59
cd00200	289	WD40 WD40 domain, found in a number of eukaryotic	98.56
PRK04043	419	tolB translocation protein TolB; Provisional	98.55
KOG4499	310	consensus Ca2+-binding protein Regucalcin/SMP30 [I	98.54
PRK05137	435	tolB translocation protein TolB; Provisional	98.53
cd00200	289	WD40 WD40 domain, found in a number of eukaryotic	98.52
TIGR02800	417	propeller_TolB tol-pal system beta propeller repea	98.5
COG3204	316	Uncharacterized protein conserved in bacteria [Fun	98.49
KOG4659	1899	consensus Uncharacterized conserved protein (Rhs f	98.49
TIGR02658	352	TTQ_MADH_Hv methylamine dehydrogenase heavy chain.	98.47
PRK02889	427	tolB translocation protein TolB; Provisional	98.44
KOG0315	311	consensus G-protein beta subunit-like protein (con	98.4
PF01731	86	Arylesterase: Arylesterase; InterPro: IPR002640 Th	98.38
KOG1214	1289	consensus Nidogen and related basement membrane pr	98.38
PF07995	331	GSDH: Glucose / Sorbosone dehydrogenase; InterPro:	98.37
PRK01742	429	tolB translocation protein TolB; Provisional	98.37
TIGR03606	454	non_repeat_PQQ dehydrogenase, PQQ-dependent, s-GDH	98.36
PRK04922	433	tolB translocation protein TolB; Provisional	98.35
PF07433	305	DUF1513: Protein of unknown function (DUF1513); In	98.35
PRK03629	429	tolB translocation protein TolB; Provisional	98.3
PRK02888	635	nitrous-oxide reductase; Validated	98.3
PRK04792	448	tolB translocation protein TolB; Provisional	98.3
PF06977	248	SdiA-regulated: SdiA-regulated; InterPro: IPR00972	98.25
COG2133	399	Glucose/sorbosone dehydrogenases [Carbohydrate tra	98.24
PRK00178	430	tolB translocation protein TolB; Provisional	98.24
KOG0291	893	consensus WD40-repeat-containing subunit of the 18	98.23
KOG1446	311	consensus Histone H3 (Lys4) methyltransferase comp	98.22
PRK01029	428	tolB translocation protein TolB; Provisional	98.22
KOG2055	514	consensus WD40 repeat protein [General function pr	98.2
KOG1446	311	consensus Histone H3 (Lys4) methyltransferase comp	98.2
KOG0278	334	consensus Serine/threonine kinase receptor-associa	98.19
TIGR03032	335	conserved hypothetical protein TIGR03032. This pro	98.19
TIGR02800	417	propeller_TolB tol-pal system beta propeller repea	98.13
KOG0318	603	consensus WD40 repeat stress protein/actin interac	98.13
PRK04043	419	tolB translocation protein TolB; Provisional	98.11
PRK01742	429	tolB translocation protein TolB; Provisional	98.11
KOG0318	603	consensus WD40 repeat stress protein/actin interac	98.09
PF05096	264	Glu_cyclase_2: Glutamine cyclotransferase; InterPr	98.06
KOG0286	343	consensus G-protein beta subunit [General function	98.03
KOG1520	376	consensus Predicted alkaloid synthase/Surface muci	98.01
KOG0266	456	consensus WD40 repeat-containing protein [General	98.01
PF05096	264	Glu_cyclase_2: Glutamine cyclotransferase; InterPr	98.0
KOG0315	311	consensus G-protein beta subunit-like protein (con	97.96
KOG0282	503	consensus mRNA splicing factor [Function unknown]	97.95
KOG0279	315	consensus G protein beta subunit-like protein [Sig	97.95
COG4946	668	Uncharacterized protein related to the periplasmic	97.95
KOG0266	456	consensus WD40 repeat-containing protein [General	97.94
KOG0278	334	consensus Serine/threonine kinase receptor-associa	97.93
PF13360	238	PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A	97.92
KOG2106	626	consensus Uncharacterized conserved protein, conta	97.9
cd00216	488	PQQ_DH Dehydrogenases with pyrrolo-quinoline quino	97.89
KOG0263	707	consensus Transcription initiation factor TFIID, s	97.89
PF05787	524	DUF839: Bacterial protein of unknown function (DUF	97.83
TIGR03032	335	conserved hypothetical protein TIGR03032. This pro	97.82
COG3204	316	Uncharacterized protein conserved in bacteria [Fun	97.76
COG3211	616	PhoX Predicted phosphatase [General function predi	97.76
COG2133	399	Glucose/sorbosone dehydrogenases [Carbohydrate tra	97.74
KOG0289	506	consensus mRNA splicing factor [General function p	97.74
PF05787	524	DUF839: Bacterial protein of unknown function (DUF	97.73
KOG0293	519	consensus WD40 repeat-containing protein [Function	97.7
KOG0772	641	consensus Uncharacterized conserved protein, conta	97.7
COG3490	366	Uncharacterized protein conserved in bacteria [Fun	97.67
COG4946	668	Uncharacterized protein related to the periplasmic	97.65
PRK02888	635	nitrous-oxide reductase; Validated	97.64
TIGR03300	377	assembly_YfgL outer membrane assembly lipoprotein	97.64
KOG2055	514	consensus WD40 repeat protein [General function pr	97.64
KOG0646	476	consensus WD40 repeat protein [General function pr	97.62
KOG1274	933	consensus WD40 repeat protein [General function pr	97.61
PF13360	238	PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A	97.6
PF08662	194	eIF2A: Eukaryotic translation initiation factor eI	97.59
PRK11138	394	outer membrane biogenesis protein BamB; Provisiona	97.57
PF13449	326	Phytase-like: Esterase-like activity of phytase	97.55
PTZ00421	493	coronin; Provisional	97.52
KOG1273	405	consensus WD40 repeat protein [General function pr	97.52
PF01436	28	NHL: NHL repeat; InterPro: IPR001258 The NHL repea	97.51
PLN00033	398	photosystem II stability/assembly factor; Provisio	97.51
PF07433	305	DUF1513: Protein of unknown function (DUF1513); In	97.48
KOG0296	399	consensus Angio-associated migratory cell protein	97.44
COG1520	370	FOG: WD40-like repeat [Function unknown]	97.43
KOG1274	933	consensus WD40 repeat protein [General function pr	97.43
KOG2048	691	consensus WD40 repeat protein [General function pr	97.42
PRK11138	394	outer membrane biogenesis protein BamB; Provisiona	97.42
KOG0279	315	consensus G protein beta subunit-like protein [Sig	97.39
PF13449	326	Phytase-like: Esterase-like activity of phytase	97.39
PF01436	28	NHL: NHL repeat; InterPro: IPR001258 The NHL repea	97.36
KOG1539	910	consensus WD repeat protein [General function pred	97.35
COG3490	366	Uncharacterized protein conserved in bacteria [Fun	97.35
PRK01029	428	tolB translocation protein TolB; Provisional	97.35
KOG0639	705	consensus Transducin-like enhancer of split protei	97.33
KOG0283	712	consensus WD40 repeat-containing protein [Function	97.3
PTZ00421	493	coronin; Provisional	97.26
KOG0293	519	consensus WD40 repeat-containing protein [Function	97.26
PTZ00420	568	coronin; Provisional	97.24
KOG0271	480	consensus Notchless-like WD40 repeat-containing pr	97.21
KOG2106	626	consensus Uncharacterized conserved protein, conta	97.17
KOG1407	313	consensus WD40 repeat protein [Function unknown]	97.16
COG0823	425	TolB Periplasmic component of the Tol biopolymer t	97.16
TIGR03300	377	assembly_YfgL outer membrane assembly lipoprotein	97.15
PF03088	89	Str_synth: Strictosidine synthase; InterPro: IPR01	97.14
KOG0263	707	consensus Transcription initiation factor TFIID, s	97.13
cd00216	488	PQQ_DH Dehydrogenases with pyrrolo-quinoline quino	97.12
PF14870	302	PSII_BNR: Photosynthesis system II assembly factor	97.12
KOG0771	398	consensus Prolactin regulatory element-binding pro	97.11
PLN00181	793	protein SPA1-RELATED; Provisional	97.11
PF08662	194	eIF2A: Eukaryotic translation initiation factor eI	97.1
TIGR03075	527	PQQ_enz_alc_DH PQQ-dependent dehydrogenase, methan	97.09
KOG0272	459	consensus U4/U6 small nuclear ribonucleoprotein Pr	97.08
KOG1273	405	consensus WD40 repeat protein [General function pr	97.07
PF14517	229	Tachylectin: Tachylectin; PDB: 1TL2_A.	97.06
COG3211	616	PhoX Predicted phosphatase [General function predi	97.04
PF14870	302	PSII_BNR: Photosynthesis system II assembly factor	97.04
PLN00181	793	protein SPA1-RELATED; Provisional	97.02
KOG0639	705	consensus Transducin-like enhancer of split protei	97.0
PF02333	381	Phytase: Phytase; InterPro: IPR003431 Phytase (3.1	96.99
smart00135	43	LY Low-density lipoprotein-receptor YWTD domain. T	96.97
KOG0282	503	consensus mRNA splicing factor [Function unknown]	96.93
KOG0286	343	consensus G-protein beta subunit [General function	96.92
KOG2096	420	consensus WD40 repeat protein [General function pr	96.9
PF14583	386	Pectate_lyase22: Oligogalacturonate lyase; PDB: 3C	96.88
PTZ00420	568	coronin; Provisional	96.87
KOG2139	445	consensus WD40 repeat protein [General function pr	96.82
KOG2139	445	consensus WD40 repeat protein [General function pr	96.75
KOG0273	524	consensus Beta-transducin family (WD-40 repeat) pr	96.72
PRK13684	334	Ycf48-like protein; Provisional	96.69
PRK13684	334	Ycf48-like protein; Provisional	96.65
KOG2919	406	consensus Guanine nucleotide-binding protein [Gene	96.64
KOG1539	910	consensus WD repeat protein [General function pred	96.62
KOG0645	312	consensus WD40 repeat protein [General function pr	96.62
COG3823	262	Glutamine cyclotransferase [Posttranslational modi	96.6
KOG0271	480	consensus Notchless-like WD40 repeat-containing pr	96.59
KOG0640	430	consensus mRNA cleavage stimulating factor complex	96.55
PF05694	461	SBP56: 56kDa selenium binding protein (SBP56); Int	96.44
PLN00033	398	photosystem II stability/assembly factor; Provisio	96.4
KOG4649	354	consensus PQQ (pyrrolo-quinoline quinone) repeat p	96.38
KOG2048	691	consensus WD40 repeat protein [General function pr	96.31
KOG0289	506	consensus mRNA splicing factor [General function p	96.24
KOG0319	775	consensus WD40-repeat-containing subunit of the 18	96.18
PF14517	229	Tachylectin: Tachylectin; PDB: 1TL2_A.	96.18
PF07494	24	Reg_prop: Two component regulator propeller; Inter	96.14
KOG0292	1202	consensus Vesicle coat complex COPI, alpha subunit	96.14
PF05694	461	SBP56: 56kDa selenium binding protein (SBP56); Int	96.11
PF07494	24	Reg_prop: Two component regulator propeller; Inter	96.02
KOG0288	459	consensus WD40 repeat protein TipD [General functi	95.95
KOG0772	641	consensus Uncharacterized conserved protein, conta	95.95
KOG0973	942	consensus Histone transcription regulator HIRA, WD	95.95
KOG0272	459	consensus U4/U6 small nuclear ribonucleoprotein Pr	95.88
KOG0973	942	consensus Histone transcription regulator HIRA, WD	95.84
COG1520	370	FOG: WD40-like repeat [Function unknown]	95.76
KOG1407	313	consensus WD40 repeat protein [Function unknown]	95.74
KOG4649	354	consensus PQQ (pyrrolo-quinoline quinone) repeat p	95.74
KOG0296	399	consensus Angio-associated migratory cell protein	95.65
PF14583	386	Pectate_lyase22: Oligogalacturonate lyase; PDB: 3C	95.65
TIGR03118	336	PEPCTERM_chp_1 conserved hypothetical protein TIGR	95.63
PRK13616	591	lipoprotein LpqB; Provisional	95.59
KOG0306	888	consensus WD40-repeat-containing subunit of the 18	95.48
KOG0294	362	consensus WD40 repeat-containing protein [Function	95.45
KOG0284	464	consensus Polyadenylation factor I complex, subuni	95.4
TIGR03075	527	PQQ_enz_alc_DH PQQ-dependent dehydrogenase, methan	95.33
KOG4378	673	consensus Nuclear protein COP1 [Signal transductio	95.29
TIGR02276	42	beta_rpt_yvtn 40-residue YVTN family beta-propelle	95.28
KOG0310	487	consensus Conserved WD40 repeat-containing protein	95.23
KOG0301	745	consensus Phospholipase A2-activating protein (con	95.22
PF08553	794	VID27: VID27 cytoplasmic protein; InterPro: IPR013	95.22
COG3823	262	Glutamine cyclotransferase [Posttranslational modi	95.22
KOG0310	487	consensus Conserved WD40 repeat-containing protein	95.1
PF00930	353	DPPIV_N: Dipeptidyl peptidase IV (DPP IV) N-termin	95.07
KOG1036	323	consensus Mitotic spindle checkpoint protein BUB3,	95.04
KOG0643	327	consensus Translation initiation factor 3, subunit	95.04
KOG0275	508	consensus Conserved WD40 repeat-containing protein	95.03
KOG0650	733	consensus WD40 repeat nucleolar protein Bop1, invo	94.99
KOG1963	792	consensus WD40 repeat protein [General function pr	94.97
PF00058	42	Ldl_recept_b: Low-density lipoprotein receptor rep	94.96
PF05935	477	Arylsulfotrans: Arylsulfotransferase (ASST); Inter	94.91
KOG0643	327	consensus Translation initiation factor 3, subunit	94.57
COG5276	370	Uncharacterized conserved protein [Function unknow	94.47
PRK13616	591	lipoprotein LpqB; Provisional	94.46
KOG0646	476	consensus WD40 repeat protein [General function pr	94.42
TIGR02276	42	beta_rpt_yvtn 40-residue YVTN family beta-propelle	94.34
KOG0275	508	consensus Conserved WD40 repeat-containing protein	94.15
KOG0319	775	consensus WD40-repeat-containing subunit of the 18	94.09
KOG0645	312	consensus WD40 repeat protein [General function pr	94.08
KOG1963	792	consensus WD40 repeat protein [General function pr	94.01
TIGR03074	764	PQQ_membr_DH membrane-bound PQQ-dependent dehydrog	93.96
KOG0283	712	consensus WD40 repeat-containing protein [Function	93.93
KOG0303	472	consensus Actin-binding protein Coronin, contains	93.9
COG0823	425	TolB Periplasmic component of the Tol biopolymer t	93.87
KOG2919	406	consensus Guanine nucleotide-binding protein [Gene	93.76
PF00058	42	Ldl_recept_b: Low-density lipoprotein receptor rep	93.65
TIGR03118	336	PEPCTERM_chp_1 conserved hypothetical protein TIGR	93.55
KOG0285	460	consensus Pleiotropic regulator 1 [RNA processing	93.41
PF05935	477	Arylsulfotrans: Arylsulfotransferase (ASST); Inter	93.37
KOG2096	420	consensus WD40 repeat protein [General function pr	93.37
PF02333	381	Phytase: Phytase; InterPro: IPR003431 Phytase (3.1	93.34
smart00135	43	LY Low-density lipoprotein-receptor YWTD domain. T	93.17
KOG0299	479	consensus U3 snoRNP-associated protein (contains W	93.13
PF02897	414	Peptidase_S9_N: Prolyl oligopeptidase, N-terminal	93.12
KOG0265	338	consensus U5 snRNP-specific protein-like factor an	92.99
KOG0294	362	consensus WD40 repeat-containing protein [Function	92.92
KOG4441	571	consensus Proteins containing BTB/POZ and Kelch do	92.83
KOG1272	545	consensus WD40-repeat-containing subunit of the 18	92.8
KOG2110	391	consensus Uncharacterized conserved protein, conta	92.8
KOG0316	307	consensus Conserved WD40 repeat-containing protein	92.76
PF10647	253	Gmad1: Lipoprotein LpqB beta-propeller domain; Int	92.36
PF06739	38	SBBP: Beta-propeller repeat; InterPro: IPR010620 T	92.29
KOG3881	412	consensus Uncharacterized conserved protein [Funct	92.1
KOG0273	524	consensus Beta-transducin family (WD-40 repeat) pr	91.96
KOG0295	406	consensus WD40 repeat-containing protein [Function	91.87
PF14269	299	Arylsulfotran_2: Arylsulfotransferase (ASST)	91.66
KOG4378	673	consensus Nuclear protein COP1 [Signal transductio	91.53
KOG0308	735	consensus Conserved WD40 repeat-containing protein	91.47
KOG0268	433	consensus Sof1-like rRNA processing protein (conta	90.99
KOG0306	888	consensus WD40-repeat-containing subunit of the 18	90.66
PF06433	342	Me-amine-dh_H: Methylamine dehydrogenase heavy cha	90.55
KOG0264	422	consensus Nucleosome remodeling factor, subunit CA	90.54
KOG0268	433	consensus Sof1-like rRNA processing protein (conta	90.3
KOG1036	323	consensus Mitotic spindle checkpoint protein BUB3,	90.22
PHA02713	557	hypothetical protein; Provisional	90.14
KOG3881	412	consensus Uncharacterized conserved protein [Funct	90.13
KOG0285	460	consensus Pleiotropic regulator 1 [RNA processing	90.09
KOG0265	338	consensus U5 snRNP-specific protein-like factor an	90.02
KOG0316	307	consensus Conserved WD40 repeat-containing protein	89.51
PF00930	353	DPPIV_N: Dipeptidyl peptidase IV (DPP IV) N-termin	89.39
KOG0301	745	consensus Phospholipase A2-activating protein (con	89.18
KOG2394	636	consensus WD40 protein DMR-N9 [General function pr	88.49
KOG1445	1012	consensus Tumor-specific antigen (contains WD repe	88.34
KOG2321	703	consensus WD40 repeat protein [General function pr	88.24
KOG1538	1081	consensus Uncharacterized conserved protein WDR10,	88.2
PF06433	342	Me-amine-dh_H: Methylamine dehydrogenase heavy cha	88.12
KOG2110	391	consensus Uncharacterized conserved protein, conta	87.96
PF08553	794	VID27: VID27 cytoplasmic protein; InterPro: IPR013	87.7
KOG1524	737	consensus WD40 repeat-containing protein CHE-2 [Ge	87.61
KOG0308	735	consensus Conserved WD40 repeat-containing protein	87.55
KOG0284	464	consensus Polyadenylation factor I complex, subuni	87.27
PHA02713	557	hypothetical protein; Provisional	87.25
KOG0299	479	consensus U3 snoRNP-associated protein (contains W	87.03
KOG0305	484	consensus Anaphase promoting complex, Cdc20, Cdh1,	86.38
KOG3914	390	consensus WD repeat protein WDR4 [Function unknown	86.37
KOG2111	346	consensus Uncharacterized conserved protein, conta	86.23
KOG2315	566	consensus Predicted translation initiation factor	86.03
KOG4328	498	consensus WD40 protein [Function unknown]	85.87
COG4247	364	Phy 3-phytase (myo-inositol-hexaphosphate 3-phosph	85.69
KOG0649	325	consensus WD40 repeat protein [General function pr	85.64
PF15492	282	Nbas_N: Neuroblastoma-amplified sequence, N termin	85.54
PF14269	299	Arylsulfotran_2: Arylsulfotransferase (ASST)	85.37
KOG0641	350	consensus WD40 repeat protein [General function pr	85.37
KOG0281	499	consensus Beta-TrCP (transducin repeats containing	85.26
PF00400	39	WD40: WD domain, G-beta repeat; InterPro: IPR01978	84.73
KOG0295	406	consensus WD40 repeat-containing protein [Function	84.63
smart00564	33	PQQ beta-propeller repeat. Beta-propeller repeat o	84.43
KOG0640	430	consensus mRNA cleavage stimulating factor complex	83.86
KOG0918	476	consensus Selenium-binding protein [Inorganic ion	83.73
KOG1408	1080	consensus WD40 repeat protein [Function unknown]	83.47
PF01731	86	Arylesterase: Arylesterase; InterPro: IPR002640 Th	83.31
KOG0292	1202	consensus Vesicle coat complex COPI, alpha subunit	83.29
KOG1408	1080	consensus WD40 repeat protein [Function unknown]	83.26
KOG0650	733	consensus WD40 repeat nucleolar protein Bop1, invo	83.25
PHA03098	534	kelch-like protein; Provisional	83.15
KOG2321	703	consensus WD40 repeat protein [General function pr	82.08
KOG0313	423	consensus Microtubule binding protein YTM1 (contai	81.95
PF15390	671	DUF4613: Domain of unknown function (DUF4613)	81.6
KOG2394	636	consensus WD40 protein DMR-N9 [General function pr	81.3
KOG2314	698	consensus Translation initiation factor 3, subunit	80.42
TIGR03074	764	PQQ_membr_DH membrane-bound PQQ-dependent dehydrog	80.34

>KOG1520 consensus Predicted alkaloid synthase/Surface mucin Hemomucin [General function prediction only]

Probab=99.95  E-value=1.4e-26  Score=184.57  Aligned_cols=192  Identities=32%  Similarity=0.598  Sum_probs=173.0

Q ss_pred             cCCccccceEEccCC-CEEEEEeCCCcEEEEec-CC-cEEEEeccCCCcccCCccEEEcCCCcEEEEeCCCCCCcccccc
Q 026118           47 VGSQSLLGLTTTKEN-NVIIVCDSQQGLLKVSE-EG-VTVLVSQFNGSQLRFANDVIEASDGSLYFTVSSTKFTPAEYYL  123 (243)
Q Consensus        47 ~~~~~~~~i~~~~~g-~l~~v~~~~~gl~~~~~-~g-~~~~~~~~~~~~~~~~~~l~~d~~G~l~v~~~~~~~~~~~~~~  123 (243)
                      .+++|. ||+++.+| ++ |||+...||+.+++ .+ .+.+.....+.+....+++.++++|.+||+|++..|.......
T Consensus       113 ~CGRPL-Gl~f~~~ggdL-~VaDAYlGL~~V~p~g~~a~~l~~~~~G~~~kf~N~ldI~~~g~vyFTDSSsk~~~rd~~~  190 (376)
T KOG1520|consen  113 LCGRPL-GIRFDKKGGDL-YVADAYLGLLKVGPEGGLAELLADEAEGKPFKFLNDLDIDPEGVVYFTDSSSKYDRRDFVF  190 (376)
T ss_pred             ccCCcc-eEEeccCCCeE-EEEecceeeEEECCCCCcceeccccccCeeeeecCceeEcCCCeEEEeccccccchhheEE
Confidence            468999 99999888 77 99999899999994 45 5666666778888899999999999999999988887766666


Q ss_pred             cccccCCCceEEEEeCCCCeeEEeeccccccceEEEcCCCCEEEEEEcCCCeEEEEEeecCCCcceEEeccCCCCCCCce
Q 026118          124 DLVSGEPHGVLLKYDPSTNQTSLVLDGLYFANGVALSEDERFLVVCESWKFRCVKHFLKVSGRTDREIFIDNLPGGPDNV  203 (243)
Q Consensus       124 ~~~~~~~~g~v~~~~~~~~~~~~~~~~~~~~~gi~~~~dg~~l~v~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~i  203 (243)
                      ++.++..+|++++||+.+...+.+.+++..|||+++|+|+..+.++++...+|.+|-+.+...++.++|..+.+|+||||
T Consensus       191 a~l~g~~~GRl~~YD~~tK~~~VLld~L~F~NGlaLS~d~sfvl~~Et~~~ri~rywi~g~k~gt~EvFa~~LPG~PDNI  270 (376)
T KOG1520|consen  191 AALEGDPTGRLFRYDPSTKVTKVLLDGLYFPNGLALSPDGSFVLVAETTTARIKRYWIKGPKAGTSEVFAEGLPGYPDNI  270 (376)
T ss_pred             eeecCCCccceEEecCcccchhhhhhcccccccccCCCCCCEEEEEeeccceeeeeEecCCccCchhhHhhcCCCCCcce
Confidence            77788889999999999888888899999999999999999999999999999999999988888899988899999999


Q ss_pred             EECCCCCEEEEEecCCchhhhhhhcChHHHHHHhhcc
Q 026118          204 NLARDGSFWISIIKMDPKGIQALQSCKERKQAVGSIS  240 (243)
Q Consensus       204 ~~d~~G~lwv~~~~~~~~~~~~~~~~~~~~~~~~~~~  240 (243)
                      ..+++|.+||+....++..+++...+|++|+++.++|
T Consensus       271 R~~~~G~fWVal~~~~~~~~~~~~~~p~vr~~~~~~~  307 (376)
T KOG1520|consen  271 RRDSTGHFWVALHSKRSTLWRLLMKYPWVRKFIAKLP  307 (376)
T ss_pred             eECCCCCEEEEEecccchHHHhhhcChHHHHHHHhhc
Confidence            9999999999999999999999999999999988875

>PF08450 SGL: SMP-30/Gluconolaconase/LRE-like region; InterPro: IPR013658 This family describes a region that is found in proteins expressed by a variety of eukaryotic and prokaryotic species

Probab=99.94  E-value=7.8e-25  Score=172.84  Aligned_cols=193  Identities=32%  Similarity=0.464  Sum_probs=145.2

Q ss_pred             cccEEEcC-CCcEEEEe-CCCcEEEEccCCc-eeEecccCCccccceEEc-cCCCEEEEEeCCCcEEEEe-cCC-cEEEE
Q 026118           12 PEDVSVDG-NGVLYTAT-GDGWIKRMHPNGT-WEDWHQVGSQSLLGLTTT-KENNVIIVCDSQQGLLKVS-EEG-VTVLV   85 (243)
Q Consensus        12 p~~i~~d~-~g~l~~~~-~~~~i~~~~~~g~-~~~~~~~~~~~~~~i~~~-~~g~l~~v~~~~~gl~~~~-~~g-~~~~~   85 (243)
                      ||++++|+ +|.||+++ ..+.|+++++++. ...+...  .|. +++++ ++|++ |++.. .++..++ .++ .+.+.
T Consensus         2 ~Egp~~d~~~g~l~~~D~~~~~i~~~~~~~~~~~~~~~~--~~~-G~~~~~~~g~l-~v~~~-~~~~~~d~~~g~~~~~~   76 (246)
T PF08450_consen    2 GEGPVWDPRDGRLYWVDIPGGRIYRVDPDTGEVEVIDLP--GPN-GMAFDRPDGRL-YVADS-GGIAVVDPDTGKVTVLA   76 (246)
T ss_dssp             EEEEEEETTTTEEEEEETTTTEEEEEETTTTEEEEEESS--SEE-EEEEECTTSEE-EEEET-TCEEEEETTTTEEEEEE
T ss_pred             CcceEEECCCCEEEEEEcCCCEEEEEECCCCeEEEEecC--CCc-eEEEEccCCEE-EEEEc-CceEEEecCCCcEEEEe
Confidence            67788886 89999988 7889999996554 4434432  378 99998 77777 99884 6777778 677 66666


Q ss_pred             eccCCC-cccCCccEEEcCCCcEEEEeCCCCCCcccccccccccCCCceEEEEeCCCCeeEEeeccccccceEEEcCCCC
Q 026118           86 SQFNGS-QLRFANDVIEASDGSLYFTVSSTKFTPAEYYLDLVSGEPHGVLLKYDPSTNQTSLVLDGLYFANGVALSEDER  164 (243)
Q Consensus        86 ~~~~~~-~~~~~~~l~~d~~G~l~v~~~~~~~~~~~~~~~~~~~~~~g~v~~~~~~~~~~~~~~~~~~~~~gi~~~~dg~  164 (243)
                      ...... ....++++++|++|++|++++.....         .....++||+++++ ++.+.+......||||++++|++
T Consensus        77 ~~~~~~~~~~~~ND~~vd~~G~ly~t~~~~~~~---------~~~~~g~v~~~~~~-~~~~~~~~~~~~pNGi~~s~dg~  146 (246)
T PF08450_consen   77 DLPDGGVPFNRPNDVAVDPDGNLYVTDSGGGGA---------SGIDPGSVYRIDPD-GKVTVVADGLGFPNGIAFSPDGK  146 (246)
T ss_dssp             EEETTCSCTEEEEEEEE-TTS-EEEEEECCBCT---------TCGGSEEEEEEETT-SEEEEEEEEESSEEEEEEETTSS
T ss_pred             eccCCCcccCCCceEEEcCCCCEEEEecCCCcc---------ccccccceEEECCC-CeEEEEecCcccccceEECCcch
Confidence            544333 56889999999999999998752110         00111789999999 88888888889999999999999


Q ss_pred             EEEEEEcCCCeEEEEEeecC--CCcceEEeccC--CCCCCCceEECCCCCEEEEEecCC
Q 026118          165 FLVVCESWKFRCVKHFLKVS--GRTDREIFIDN--LPGGPDNVNLARDGSFWISIIKMD  219 (243)
Q Consensus       165 ~l~v~~~~~~~i~~~~~~~~--~~~~~~~~~~~--~~~~~~~i~~d~~G~lwv~~~~~~  219 (243)
                      .||++++..++|++|+++..  .+...+.+...  ..+.|+||++|++|+|||+.+.++
T Consensus       147 ~lyv~ds~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~g~pDG~~vD~~G~l~va~~~~~  205 (246)
T PF08450_consen  147 TLYVADSFNGRIWRFDLDADGGELSNRRVFIDFPGGPGYPDGLAVDSDGNLWVADWGGG  205 (246)
T ss_dssp             EEEEEETTTTEEEEEEEETTTCCEEEEEEEEE-SSSSCEEEEEEEBTTS-EEEEEETTT
T ss_pred             heeecccccceeEEEeccccccceeeeeeEEEcCCCCcCCCcceEcCCCCEEEEEcCCC
Confidence            99999999999999999843  24555655432  224699999999999999988654

These proteins include various enzymes, such as senescence marker protein 30 (SMP-30, Q15493 from SWISSPROT), gluconolactonase (Q01578 from SWISSPROT) and luciferin-regenerating enzyme (LRE, Q86DU5 from SWISSPROT). SMP-30 is known to hydrolyse diisopropyl phosphorofluoridate in the liver, and has been noted as having sequence similarity, in the region described in this family, with PON1 (P52430 from SWISSPROT) and LRE. ; PDB: 2GHS_A 2DG0_L 2DG1_D 2DSO_D 3E5Z_A 2IAT_A 2IAV_A 2GVV_A 3HLI_A 2GVU_A ....

>COG3386 Gluconolactonase [Carbohydrate transport and metabolism]

Probab=99.93  E-value=7.2e-24  Score=169.87  Aligned_cols=201  Identities=28%  Similarity=0.436  Sum_probs=148.7

Q ss_pred             eecccccCCcccEEEcCCCcEEEEe-CCCcEEEEcc-CCceeEecccCCccccceEEccCCCEEEEEeCCCcEEEEe-cC
Q 026118            3 KLGEGIVNHPEDVSVDGNGVLYTAT-GDGWIKRMHP-NGTWEDWHQVGSQSLLGLTTTKENNVIIVCDSQQGLLKVS-EE   79 (243)
Q Consensus         3 ~~~~g~~~~p~~i~~d~~g~l~~~~-~~~~i~~~~~-~g~~~~~~~~~~~~~~~i~~~~~g~l~~v~~~~~gl~~~~-~~   79 (243)
                      +++|||+|.|+      .+.||.++ ..++|+++++ +|+...+..+...+. ++.++.+|.+ +++.  .|+++++ .+
T Consensus        25 ~~gEgP~w~~~------~~~L~w~DI~~~~i~r~~~~~g~~~~~~~p~~~~~-~~~~d~~g~L-v~~~--~g~~~~~~~~   94 (307)
T COG3386          25 TLGEGPVWDPD------RGALLWVDILGGRIHRLDPETGKKRVFPSPGGFSS-GALIDAGGRL-IACE--HGVRLLDPDT   94 (307)
T ss_pred             ccccCccCcCC------CCEEEEEeCCCCeEEEecCCcCceEEEECCCCccc-ceeecCCCeE-EEEc--cccEEEeccC
Confidence            46677777665      56677776 8899999996 588888887666666 7888888877 6664  5677777 55


Q ss_pred             C-c-EEEEeccCCCcccCCccEEEcCCCcEEEEeCCCCCCcccccccccccCCCceEEEEeCCCCeeEEeeccccccceE
Q 026118           80 G-V-TVLVSQFNGSQLRFANDVIEASDGSLYFTVSSTKFTPAEYYLDLVSGEPHGVLLKYDPSTNQTSLVLDGLYFANGV  157 (243)
Q Consensus        80 g-~-~~~~~~~~~~~~~~~~~l~~d~~G~l~v~~~~~~~~~~~~~~~~~~~~~~g~v~~~~~~~~~~~~~~~~~~~~~gi  157 (243)
                      + . +.+.....+.+.+.+|+..++++|++||++++. +.     .+.......|.||++++.++..+.+......||||
T Consensus        95 ~~~~t~~~~~~~~~~~~r~ND~~v~pdG~~wfgt~~~-~~-----~~~~~~~~~G~lyr~~p~g~~~~l~~~~~~~~NGl  168 (307)
T COG3386          95 GGKITLLAEPEDGLPLNRPNDGVVDPDGRIWFGDMGY-FD-----LGKSEERPTGSLYRVDPDGGVVRLLDDDLTIPNGL  168 (307)
T ss_pred             CceeEEeccccCCCCcCCCCceeEcCCCCEEEeCCCc-cc-----cCccccCCcceEEEEcCCCCEEEeecCcEEecCce
Confidence            5 4 666666666777899999999999999999872 11     12223345678999999744444444558999999


Q ss_pred             EEcCCCCEEEEEEcCCCeEEEEEeec--CCCcce--EEeccCCCCCCCceEECCCCCEEEEEecCC
Q 026118          158 ALSEDERFLVVCESWKFRCVKHFLKV--SGRTDR--EIFIDNLPGGPDNVNLARDGSFWISIIKMD  219 (243)
Q Consensus       158 ~~~~dg~~l~v~~~~~~~i~~~~~~~--~~~~~~--~~~~~~~~~~~~~i~~d~~G~lwv~~~~~~  219 (243)
                      +||||+++||++++..+.|++|+.+.  ......  ..+....++.|||+++|++|+||++...++
T Consensus       169 a~SpDg~tly~aDT~~~~i~r~~~d~~~g~~~~~~~~~~~~~~~G~PDG~~vDadG~lw~~a~~~g  234 (307)
T COG3386         169 AFSPDGKTLYVADTPANRIHRYDLDPATGPIGGRRGFVDFDEEPGLPDGMAVDADGNLWVAAVWGG  234 (307)
T ss_pred             EECCCCCEEEEEeCCCCeEEEEecCcccCccCCcceEEEccCCCCCCCceEEeCCCCEEEecccCC
Confidence            99999999999999999999998872  222222  333445678999999999999997554443

>COG4257 Vgb Streptogramin lyase [Defense mechanisms]

Probab=99.77  E-value=4.6e-17  Score=124.36  Aligned_cols=190  Identities=12%  Similarity=0.115  Sum_probs=139.9

Q ss_pred             eecccccCCcccEEEcCCCcEEEEeCCCcEEEEc-cCCceeEecccCCcc----ccceEEccCCCEEEEEeCCCcEE-EE
Q 026118            3 KLGEGIVNHPEDVSVDGNGVLYTATGDGWIKRMH-PNGTWEDWHQVGSQS----LLGLTTTKENNVIIVCDSQQGLL-KV   76 (243)
Q Consensus         3 ~~~~g~~~~p~~i~~d~~g~l~~~~~~~~i~~~~-~~g~~~~~~~~~~~~----~~~i~~~~~g~l~~v~~~~~gl~-~~   76 (243)
                      ++..|.=..|.+|.+++||..|+++....|.|++ ++..+++|..+...+    . ...||+.|++ |++.. .|.+ ++
T Consensus        97 ~ypLg~Ga~Phgiv~gpdg~~Witd~~~aI~R~dpkt~evt~f~lp~~~a~~nle-t~vfD~~G~l-WFt~q-~G~yGrL  173 (353)
T COG4257          97 TYPLGSGASPHGIVVGPDGSAWITDTGLAIGRLDPKTLEVTRFPLPLEHADANLE-TAVFDPWGNL-WFTGQ-IGAYGRL  173 (353)
T ss_pred             EEecCCCCCCceEEECCCCCeeEecCcceeEEecCcccceEEeecccccCCCccc-ceeeCCCccE-EEeec-cccceec
Confidence            3334433889999999999999998766999999 488899887654333    3 5789999999 77764 4444 77


Q ss_pred             e-cCC-cEEEEeccCCCcccCCccEEEcCCCcEEEEeCCCCCCcccccccccccCCCceEEEEeCCCCeeEEeec--c-c
Q 026118           77 S-EEG-VTVLVSQFNGSQLRFANDVIEASDGSLYFTVSSTKFTPAEYYLDLVSGEPHGVLLKYDPSTNQTSLVLD--G-L  151 (243)
Q Consensus        77 ~-~~g-~~~~~~~~~~~~~~~~~~l~~d~~G~l~v~~~~~~~~~~~~~~~~~~~~~~g~v~~~~~~~~~~~~~~~--~-~  151 (243)
                      | ..+ ++++.. +.+   -.+++||+.++|.+|++...                 .+.|.++|+.++..+.+..  . .
T Consensus       174 dPa~~~i~vfpa-PqG---~gpyGi~atpdGsvwyasla-----------------gnaiaridp~~~~aev~p~P~~~~  232 (353)
T COG4257         174 DPARNVISVFPA-PQG---GGPYGICATPDGSVWYASLA-----------------GNAIARIDPFAGHAEVVPQPNALK  232 (353)
T ss_pred             CcccCceeeecc-CCC---CCCcceEECCCCcEEEEecc-----------------ccceEEcccccCCcceecCCCccc
Confidence            7 445 554432 333   36889999999999998432                 3468999999887666532  2 2


Q ss_pred             cccceEEEcCCCCEEEEEEcCCCeEEEEEeecCCCcceEEec-cCCCCCCCceEECCCCCEEEEEecCCc
Q 026118          152 YFANGVALSEDERFLVVCESWKFRCVKHFLKVSGRTDREIFI-DNLPGGPDNVNLARDGSFWISIIKMDP  220 (243)
Q Consensus       152 ~~~~gi~~~~dg~~l~v~~~~~~~i~~~~~~~~~~~~~~~~~-~~~~~~~~~i~~d~~G~lwv~~~~~~~  220 (243)
                      .....+..|+.|+ +|+++..+.++++|+++...   +..+. ......|..|.+|.+|++|.+.+..+.
T Consensus       233 ~gsRriwsdpig~-~wittwg~g~l~rfdPs~~s---W~eypLPgs~arpys~rVD~~grVW~sea~aga  298 (353)
T COG4257         233 AGSRRIWSDPIGR-AWITTWGTGSLHRFDPSVTS---WIEYPLPGSKARPYSMRVDRHGRVWLSEADAGA  298 (353)
T ss_pred             ccccccccCccCc-EEEeccCCceeeEeCccccc---ceeeeCCCCCCCcceeeeccCCcEEeeccccCc
Confidence            3445688889998 99999999999999987632   33332 233447899999999999998877653

>COG4257 Vgb Streptogramin lyase [Defense mechanisms]

Probab=99.73  E-value=5e-16  Score=118.72  Aligned_cols=186  Identities=16%  Similarity=0.179  Sum_probs=138.0

Q ss_pred             CCcccEEEcCCCcEEEEe-CCCcEEEEc-cCCceeEecccC-CccccceEEccCCCEEEEEeCCCcEEEEe-cCC-cEEE
Q 026118           10 NHPEDVSVDGNGVLYTAT-GDGWIKRMH-PNGTWEDWHQVG-SQSLLGLTTTKENNVIIVCDSQQGLLKVS-EEG-VTVL   84 (243)
Q Consensus        10 ~~p~~i~~d~~g~l~~~~-~~~~i~~~~-~~g~~~~~~~~~-~~~~~~i~~~~~g~l~~v~~~~~gl~~~~-~~g-~~~~   84 (243)
                      ..|..++.++||.+|++. ..+.|-++| .+|+++.+.... ..|. +|..++||.. ||++...+|.+++ ++. ++.+
T Consensus        62 ~ap~dvapapdG~VWft~qg~gaiGhLdP~tGev~~ypLg~Ga~Ph-giv~gpdg~~-Witd~~~aI~R~dpkt~evt~f  139 (353)
T COG4257          62 SAPFDVAPAPDGAVWFTAQGTGAIGHLDPATGEVETYPLGSGASPH-GIVVGPDGSA-WITDTGLAIGRLDPKTLEVTRF  139 (353)
T ss_pred             CCccccccCCCCceEEecCccccceecCCCCCceEEEecCCCCCCc-eEEECCCCCe-eEecCcceeEEecCcccceEEe
Confidence            357789999999999887 667788999 589998887654 4567 9999999999 9999878999999 566 6665


Q ss_pred             EeccCCCcccCCccEEEcCCCcEEEEeCCCCCCcccccccccccCCCceEEEEeCCCCeeEEee-ccccccceEEEcCCC
Q 026118           85 VSQFNGSQLRFANDVIEASDGSLYFTVSSTKFTPAEYYLDLVSGEPHGVLLKYDPSTNQTSLVL-DGLYFANGVALSEDE  163 (243)
Q Consensus        85 ~~~~~~~~~~~~~~l~~d~~G~l~v~~~~~~~~~~~~~~~~~~~~~~g~v~~~~~~~~~~~~~~-~~~~~~~gi~~~~dg  163 (243)
                      ..... ......+...+|++|++||+...                  |.--++||.++.++.+. .....|+||+..|||
T Consensus       140 ~lp~~-~a~~nlet~vfD~~G~lWFt~q~------------------G~yGrLdPa~~~i~vfpaPqG~gpyGi~atpdG  200 (353)
T COG4257         140 PLPLE-HADANLETAVFDPWGNLWFTGQI------------------GAYGRLDPARNVISVFPAPQGGGPYGICATPDG  200 (353)
T ss_pred             ecccc-cCCCcccceeeCCCccEEEeecc------------------ccceecCcccCceeeeccCCCCCCcceEECCCC
Confidence            43221 12234556789999999999543                  22227888877666553 234678999999999


Q ss_pred             CEEEEEEcCCCeEEEEEeecCCCcceEEecc--CCCCCCCceEECCCCCEEEEEecCCc
Q 026118          164 RFLVVCESWKFRCVKHFLKVSGRTDREIFID--NLPGGPDNVNLARDGSFWISIIKMDP  220 (243)
Q Consensus       164 ~~l~v~~~~~~~i~~~~~~~~~~~~~~~~~~--~~~~~~~~i~~d~~G~lwv~~~~~~~  220 (243)
                      . +|+++-..+.|.++|+...   ..+++..  .+......+-.|+.|++|++++..+.
T Consensus       201 s-vwyaslagnaiaridp~~~---~aev~p~P~~~~~gsRriwsdpig~~wittwg~g~  255 (353)
T COG4257         201 S-VWYASLAGNAIARIDPFAG---HAEVVPQPNALKAGSRRIWSDPIGRAWITTWGTGS  255 (353)
T ss_pred             c-EEEEeccccceEEcccccC---CcceecCCCcccccccccccCccCcEEEeccCCce
Confidence            9 9999888899999987642   3344432  11223456888999999999877653

>PLN02919 haloacid dehalogenase-like hydrolase family protein

Probab=99.72  E-value=3.9e-15  Score=137.78  Aligned_cols=196  Identities=20%  Similarity=0.248  Sum_probs=137.7

Q ss_pred             ccccCCcccEEEcC-CCcEEEEe-CCCcEEEEccCCceeEeccc---------------CCccccceEEccCCCEEEEEe
Q 026118            6 EGIVNHPEDVSVDG-NGVLYTAT-GDGWIKRMHPNGTWEDWHQV---------------GSQSLLGLTTTKENNVIIVCD   68 (243)
Q Consensus         6 ~g~~~~p~~i~~d~-~g~l~~~~-~~~~i~~~~~~g~~~~~~~~---------------~~~~~~~i~~~~~g~l~~v~~   68 (243)
                      ..++..|.++++|+ +|+||+++ .+++|.+++.+|++......               ...|. +|+++++++.|||++
T Consensus       564 ~s~l~~P~gvavd~~~g~lyVaDs~n~rI~v~d~~G~~i~~ig~~g~~G~~dG~~~~a~f~~P~-GIavd~~gn~LYVaD  642 (1057)
T PLN02919        564 TSPLKFPGKLAIDLLNNRLFISDSNHNRIVVTDLDGNFIVQIGSTGEEGLRDGSFEDATFNRPQ-GLAYNAKKNLLYVAD  642 (1057)
T ss_pred             cccCCCCceEEEECCCCeEEEEECCCCeEEEEeCCCCEEEEEccCCCcCCCCCchhccccCCCc-EEEEeCCCCEEEEEe
Confidence            34689999999996 67899998 77889999987775433211               12478 999999888669998


Q ss_pred             CCC-cEEEEe-cCC-cEEEEec------cCC------CcccCCccEEEcC-CCcEEEEeCCCCCCcccccccccccCCCc
Q 026118           69 SQQ-GLLKVS-EEG-VTVLVSQ------FNG------SQLRFANDVIEAS-DGSLYFTVSSTKFTPAEYYLDLVSGEPHG  132 (243)
Q Consensus        69 ~~~-gl~~~~-~~g-~~~~~~~------~~~------~~~~~~~~l~~d~-~G~l~v~~~~~~~~~~~~~~~~~~~~~~g  132 (243)
                      ..+ .|.+++ .++ ++.+...      ..+      ...+.|.++++++ +|.+|+++..                 ..
T Consensus       643 t~n~~Ir~id~~~~~V~tlag~G~~g~~~~gg~~~~~~~ln~P~gVa~dp~~g~LyVad~~-----------------~~  705 (1057)
T PLN02919        643 TENHALREIDFVNETVRTLAGNGTKGSDYQGGKKGTSQVLNSPWDVCFEPVNEKVYIAMAG-----------------QH  705 (1057)
T ss_pred             CCCceEEEEecCCCEEEEEeccCcccCCCCCChhhhHhhcCCCeEEEEecCCCeEEEEECC-----------------CC
Confidence            764 477788 566 5544321      111      1245788999999 6889999754                 34


Q ss_pred             eEEEEeCCCCeeEEeec---------------cccccceEEEcCCCCEEEEEEcCCCeEEEEEeecCCCcceE-------
Q 026118          133 VLLKYDPSTNQTSLVLD---------------GLYFANGVALSEDERFLVVCESWKFRCVKHFLKVSGRTDRE-------  190 (243)
Q Consensus       133 ~v~~~~~~~~~~~~~~~---------------~~~~~~gi~~~~dg~~l~v~~~~~~~i~~~~~~~~~~~~~~-------  190 (243)
                      .|+++++.++....+..               ....|+||+++++|++|||++..+++|.+++++++......       
T Consensus       706 ~I~v~d~~~g~v~~~~G~G~~~~~~g~~~~~~~~~~P~GIavspdG~~LYVADs~n~~Irv~D~~tg~~~~~~gg~~~~~  785 (1057)
T PLN02919        706 QIWEYNISDGVTRVFSGDGYERNLNGSSGTSTSFAQPSGISLSPDLKELYIADSESSSIRALDLKTGGSRLLAGGDPTFS  785 (1057)
T ss_pred             eEEEEECCCCeEEEEecCCccccCCCCccccccccCccEEEEeCCCCEEEEEECCCCeEEEEECCCCcEEEEEecccccC
Confidence            68888887665543321               13468999999999999999999999999998643211000       


Q ss_pred             ----Eecc-------CCCCCCCceEECCCCCEEEEEecCC
Q 026118          191 ----IFID-------NLPGGPDNVNLARDGSFWISIIKMD  219 (243)
Q Consensus       191 ----~~~~-------~~~~~~~~i~~d~~G~lwv~~~~~~  219 (243)
                          .+..       .....|.++++|++|+|||++..++
T Consensus       786 ~~l~~fG~~dG~g~~~~l~~P~Gvavd~dG~LYVADs~N~  825 (1057)
T PLN02919        786 DNLFKFGDHDGVGSEVLLQHPLGVLCAKDGQIYVADSYNH  825 (1057)
T ss_pred             cccccccCCCCchhhhhccCCceeeEeCCCcEEEEECCCC
Confidence                0000       0112589999999999999987654

>PLN02919 haloacid dehalogenase-like hydrolase family protein

Probab=99.66  E-value=3.5e-14  Score=131.56  Aligned_cols=193  Identities=16%  Similarity=0.207  Sum_probs=131.4

Q ss_pred             cccCCcccEEEcCCC-cEEEEe-CCCcEEEEcc-CCceeEecc-----------------cCCccccceEEcc-CCCEEE
Q 026118            7 GIVNHPEDVSVDGNG-VLYTAT-GDGWIKRMHP-NGTWEDWHQ-----------------VGSQSLLGLTTTK-ENNVII   65 (243)
Q Consensus         7 g~~~~p~~i~~d~~g-~l~~~~-~~~~i~~~~~-~g~~~~~~~-----------------~~~~~~~~i~~~~-~g~l~~   65 (243)
                      +.+..|.+|++|+++ .||+++ .++.|.+++. ++.+..+..                 ....|. ++++++ +|++ |
T Consensus       621 a~f~~P~GIavd~~gn~LYVaDt~n~~Ir~id~~~~~V~tlag~G~~g~~~~gg~~~~~~~ln~P~-gVa~dp~~g~L-y  698 (1057)
T PLN02919        621 ATFNRPQGLAYNAKKNLLYVADTENHALREIDFVNETVRTLAGNGTKGSDYQGGKKGTSQVLNSPW-DVCFEPVNEKV-Y  698 (1057)
T ss_pred             cccCCCcEEEEeCCCCEEEEEeCCCceEEEEecCCCEEEEEeccCcccCCCCCChhhhHhhcCCCe-EEEEecCCCeE-E
Confidence            457789999999866 589998 5678888884 455544321                 023567 899998 5556 9


Q ss_pred             EEeCC-CcEEEEe-cCC-cEEEEec-----cC-----CCcccCCccEEEcCCCc-EEEEeCCCCCCcccccccccccCCC
Q 026118           66 VCDSQ-QGLLKVS-EEG-VTVLVSQ-----FN-----GSQLRFANDVIEASDGS-LYFTVSSTKFTPAEYYLDLVSGEPH  131 (243)
Q Consensus        66 v~~~~-~gl~~~~-~~g-~~~~~~~-----~~-----~~~~~~~~~l~~d~~G~-l~v~~~~~~~~~~~~~~~~~~~~~~  131 (243)
                      |++.. +.|++++ .++ ...+...     ..     ......|.+|+++++|. +|+++..                 +
T Consensus       699 Vad~~~~~I~v~d~~~g~v~~~~G~G~~~~~~g~~~~~~~~~~P~GIavspdG~~LYVADs~-----------------n  761 (1057)
T PLN02919        699 IAMAGQHQIWEYNISDGVTRVFSGDGYERNLNGSSGTSTSFAQPSGISLSPDLKELYIADSE-----------------S  761 (1057)
T ss_pred             EEECCCCeEEEEECCCCeEEEEecCCccccCCCCccccccccCccEEEEeCCCCEEEEEECC-----------------C
Confidence            99865 4577888 556 4333211     00     11235788999999986 9999754                 3


Q ss_pred             ceEEEEeCCCCeeEEeec----------------------cccccceEEEcCCCCEEEEEEcCCCeEEEEEeecCCCcce
Q 026118          132 GVLLKYDPSTNQTSLVLD----------------------GLYFANGVALSEDERFLVVCESWKFRCVKHFLKVSGRTDR  189 (243)
Q Consensus       132 g~v~~~~~~~~~~~~~~~----------------------~~~~~~gi~~~~dg~~l~v~~~~~~~i~~~~~~~~~~~~~  189 (243)
                      +.|.++|++++....+..                      ....|.+++++++|+ +||++..+++|.+|+.++......
T Consensus       762 ~~Irv~D~~tg~~~~~~gg~~~~~~~l~~fG~~dG~g~~~~l~~P~Gvavd~dG~-LYVADs~N~rIrviD~~tg~v~ti  840 (1057)
T PLN02919        762 SSIRALDLKTGGSRLLAGGDPTFSDNLFKFGDHDGVGSEVLLQHPLGVLCAKDGQ-IYVADSYNHKIKKLDPATKRVTTL  840 (1057)
T ss_pred             CeEEEEECCCCcEEEEEecccccCcccccccCCCCchhhhhccCCceeeEeCCCc-EEEEECCCCEEEEEECCCCeEEEE
Confidence            578888887665432211                      124688999999998 999999999999999875422211


Q ss_pred             EEec----------cCCCCCCCceEECCCCCEEEEEecCC
Q 026118          190 EIFI----------DNLPGGPDNVNLARDGSFWISIIKMD  219 (243)
Q Consensus       190 ~~~~----------~~~~~~~~~i~~d~~G~lwv~~~~~~  219 (243)
                      ....          ......|.+|++|++|+|||++..++
T Consensus       841 aG~G~~G~~dG~~~~a~l~~P~GIavd~dG~lyVaDt~Nn  880 (1057)
T PLN02919        841 AGTGKAGFKDGKALKAQLSEPAGLALGENGRLFVADTNNS  880 (1057)
T ss_pred             eccCCcCCCCCcccccccCCceEEEEeCCCCEEEEECCCC
Confidence            1000          01123699999999999999986554

>PF10282 Lactonase: Lactonase, 7-bladed beta-propeller; InterPro: IPR019405 6-phosphogluconolactonases (6PGL) 3

Probab=99.60  E-value=9.3e-13  Score=108.98  Aligned_cols=191  Identities=19%  Similarity=0.232  Sum_probs=120.5

Q ss_pred             CCcccEEEcCCC-cEEEEe-CCCcEEEEc--cCCceeEec--------------ccCCccccceEEccCCCEEEEEeCC-
Q 026118           10 NHPEDVSVDGNG-VLYTAT-GDGWIKRMH--PNGTWEDWH--------------QVGSQSLLGLTTTKENNVIIVCDSQ-   70 (243)
Q Consensus        10 ~~p~~i~~d~~g-~l~~~~-~~~~i~~~~--~~g~~~~~~--------------~~~~~~~~~i~~~~~g~l~~v~~~~-   70 (243)
                      ..|+.|+++++| .||+++ ..+.|..++  .+|+.....              .....|. .+.++|+|+++|+++.+ 
T Consensus        87 ~~p~~i~~~~~g~~l~vany~~g~v~v~~l~~~g~l~~~~~~~~~~g~g~~~~rq~~~h~H-~v~~~pdg~~v~v~dlG~  165 (345)
T PF10282_consen   87 SSPCHIAVDPDGRFLYVANYGGGSVSVFPLDDDGSLGEVVQTVRHEGSGPNPDRQEGPHPH-QVVFSPDGRFVYVPDLGA  165 (345)
T ss_dssp             SCEEEEEECTTSSEEEEEETTTTEEEEEEECTTSEEEEEEEEEESEEEESSTTTTSSTCEE-EEEE-TTSSEEEEEETTT
T ss_pred             CCcEEEEEecCCCEEEEEEccCCeEEEEEccCCcccceeeeecccCCCCCcccccccccce-eEEECCCCCEEEEEecCC
Confidence            578999999988 588888 566665554  556544321              1123456 88999999987998865 


Q ss_pred             CcEEEEe-c--CC-cEEEEeccCCCcccCCccEEEcCCCc-EEEEeCCCCCCcccccccccccCCCceEEEEeCCCCeeE
Q 026118           71 QGLLKVS-E--EG-VTVLVSQFNGSQLRFANDVIEASDGS-LYFTVSSTKFTPAEYYLDLVSGEPHGVLLKYDPSTNQTS  145 (243)
Q Consensus        71 ~gl~~~~-~--~g-~~~~~~~~~~~~~~~~~~l~~d~~G~-l~v~~~~~~~~~~~~~~~~~~~~~~g~v~~~~~~~~~~~  145 (243)
                      ..|+.++ .  .+ ..... ......-..|..|+++++|+ +|+.+..               ...-.++.++..++.++
T Consensus       166 D~v~~~~~~~~~~~l~~~~-~~~~~~G~GPRh~~f~pdg~~~Yv~~e~---------------s~~v~v~~~~~~~g~~~  229 (345)
T PF10282_consen  166 DRVYVYDIDDDTGKLTPVD-SIKVPPGSGPRHLAFSPDGKYAYVVNEL---------------SNTVSVFDYDPSDGSLT  229 (345)
T ss_dssp             TEEEEEEE-TTS-TEEEEE-EEECSTTSSEEEEEE-TTSSEEEEEETT---------------TTEEEEEEEETTTTEEE
T ss_pred             CEEEEEEEeCCCceEEEee-ccccccCCCCcEEEEcCCcCEEEEecCC---------------CCcEEEEeecccCCcee
Confidence            3566666 3  23 33322 12223346789999999986 6776422               11223556664467665


Q ss_pred             Eeec------c---ccccceEEEcCCCCEEEEEEcCCCeEEEEEeec--CCCcceEEeccCCCCCCCceEECCCCC-EEE
Q 026118          146 LVLD------G---LYFANGVALSEDERFLVVCESWKFRCVKHFLKV--SGRTDREIFIDNLPGGPDNVNLARDGS-FWI  213 (243)
Q Consensus       146 ~~~~------~---~~~~~gi~~~~dg~~l~v~~~~~~~i~~~~~~~--~~~~~~~~~~~~~~~~~~~i~~d~~G~-lwv  213 (243)
                      .+..      .   ...+.+|+++|||++||+++...+.|..|+++.  +.+...+.+. .....|.+|+++++|+ |||
T Consensus       230 ~~~~~~~~~~~~~~~~~~~~i~ispdg~~lyvsnr~~~sI~vf~~d~~~g~l~~~~~~~-~~G~~Pr~~~~s~~g~~l~V  308 (345)
T PF10282_consen  230 EIQTISTLPEGFTGENAPAEIAISPDGRFLYVSNRGSNSISVFDLDPATGTLTLVQTVP-TGGKFPRHFAFSPDGRYLYV  308 (345)
T ss_dssp             EEEEEESCETTSCSSSSEEEEEE-TTSSEEEEEECTTTEEEEEEECTTTTTEEEEEEEE-ESSSSEEEEEE-TTSSEEEE
T ss_pred             EEEEeeeccccccccCCceeEEEecCCCEEEEEeccCCEEEEEEEecCCCceEEEEEEe-CCCCCccEEEEeCCCCEEEE
Confidence            4321      1   125788999999999999999999999999953  3343333332 2234699999999998 676


Q ss_pred             EEecC
Q 026118          214 SIIKM  218 (243)
Q Consensus       214 ~~~~~  218 (243)
                      +....
T Consensus       309 a~~~s  313 (345)
T PF10282_consen  309 ANQDS  313 (345)
T ss_dssp             EETTT
T ss_pred             EecCC
Confidence            65443

1.1.31 from EC, which hydrolyses 6-phosphogluconolactone to 6-phosphogluconate is opne of the enzymes in the pentose phosphate pathway. Two families of structurally dissimilar 6PGLs are known to exist: the Escherichia coli (strain K12) YbhE IPR022528 from INTERPRO [] and the Pseudomonas aeruginosa DevB IPR005900 from INTERPRO [] types. This entry contains bacterial 6-phosphogluconolactonases (6PGL) YbhE-type 3.1.1.31 from EC which hydrolyse 6-phosphogluconolactone to 6-phosphogluconate. The entry also contains the fungal muconate lactonizing enzyme carboxy-cis,cis-muconate cyclase 5.5.1.5 from EC and muconate cycloisomerase 5.5.1.1 from EC, which convert cis,cis-muconates to muconolactones and vice versa as part of the microbial beta-ketoadipate pathway. Structures have been reported for the E. coli 6-phosphogluconolactonase and Neurospora crassa muconate cycloisomerase. Structures of proteins in this family have revealed a 7-bladed beta-propeller fold [].; PDB: 3SCY_A 1L0Q_A 3HFQ_B 3FGB_A 1RI6_A 3U4Y_A 3BWS_A 1JOF_H.

>PF08450 SGL: SMP-30/Gluconolaconase/LRE-like region; InterPro: IPR013658 This family describes a region that is found in proteins expressed by a variety of eukaryotic and prokaryotic species

Probab=99.59  E-value=1.3e-13  Score=108.81  Aligned_cols=143  Identities=22%  Similarity=0.367  Sum_probs=102.0

Q ss_pred             ccCCcccEEEcCCCcEEEEeC-C--------CcEEEEccCCceeEecccCCccccceEEccCCCEEEEEeCC-CcEEEEe
Q 026118            8 IVNHPEDVSVDGNGVLYTATG-D--------GWIKRMHPNGTWEDWHQVGSQSLLGLTTTKENNVIIVCDSQ-QGLLKVS   77 (243)
Q Consensus         8 ~~~~p~~i~~d~~g~l~~~~~-~--------~~i~~~~~~g~~~~~~~~~~~~~~~i~~~~~g~l~~v~~~~-~gl~~~~   77 (243)
                      ++..|..+++|++|+||+++. .        ++|+++++++++.........|+ ||+++++|+.||+++.. +.|++++
T Consensus        84 ~~~~~ND~~vd~~G~ly~t~~~~~~~~~~~~g~v~~~~~~~~~~~~~~~~~~pN-Gi~~s~dg~~lyv~ds~~~~i~~~~  162 (246)
T PF08450_consen   84 PFNRPNDVAVDPDGNLYVTDSGGGGASGIDPGSVYRIDPDGKVTVVADGLGFPN-GIAFSPDGKTLYVADSFNGRIWRFD  162 (246)
T ss_dssp             CTEEEEEEEE-TTS-EEEEEECCBCTTCGGSEEEEEEETTSEEEEEEEEESSEE-EEEEETTSSEEEEEETTTTEEEEEE
T ss_pred             ccCCCceEEEcCCCCEEEEecCCCccccccccceEEECCCCeEEEEecCccccc-ceEECCcchheeecccccceeEEEe
Confidence            467899999999999999972 1        67999998777766655556788 99999999877988765 4588888


Q ss_pred             -c-CCc-----EEEEeccCCCcccCCccEEEcCCCcEEEEeCCCCCCcccccccccccCCCceEEEEeCCCCeeEE-eec
Q 026118           78 -E-EGV-----TVLVSQFNGSQLRFANDVIEASDGSLYFTVSSTKFTPAEYYLDLVSGEPHGVLLKYDPSTNQTSL-VLD  149 (243)
Q Consensus        78 -~-~g~-----~~~~~~~~~~~~~~~~~l~~d~~G~l~v~~~~~~~~~~~~~~~~~~~~~~g~v~~~~~~~~~~~~-~~~  149 (243)
                       . .+.     +.+.. ... ....|.+|++|++|+||++...                 .++|++++++ |++.. +..
T Consensus       163 ~~~~~~~~~~~~~~~~-~~~-~~g~pDG~~vD~~G~l~va~~~-----------------~~~I~~~~p~-G~~~~~i~~  222 (246)
T PF08450_consen  163 LDADGGELSNRRVFID-FPG-GPGYPDGLAVDSDGNLWVADWG-----------------GGRIVVFDPD-GKLLREIEL  222 (246)
T ss_dssp             EETTTCCEEEEEEEEE--SS-SSCEEEEEEEBTTS-EEEEEET-----------------TTEEEEEETT-SCEEEEEE-
T ss_pred             ccccccceeeeeeEEE-cCC-CCcCCCcceEcCCCCEEEEEcC-----------------CCEEEEECCC-ccEEEEEcC
Confidence             3 232     12211 111 1135889999999999999532                 4689999999 65444 443


Q ss_pred             cccccceEEE-cCCCCEEEEEEc
Q 026118          150 GLYFANGVAL-SEDERFLVVCES  171 (243)
Q Consensus       150 ~~~~~~gi~~-~~dg~~l~v~~~  171 (243)
                      ....|..++| -++.+.|||+..
T Consensus       223 p~~~~t~~~fgg~~~~~L~vTta  245 (246)
T PF08450_consen  223 PVPRPTNCAFGGPDGKTLYVTTA  245 (246)
T ss_dssp             SSSSEEEEEEESTTSSEEEEEEB
T ss_pred             CCCCEEEEEEECCCCCEEEEEeC
Confidence            4468889999 467788999964

These proteins include various enzymes, such as senescence marker protein 30 (SMP-30, Q15493 from SWISSPROT), gluconolactonase (Q01578 from SWISSPROT) and luciferin-regenerating enzyme (LRE, Q86DU5 from SWISSPROT). SMP-30 is known to hydrolyse diisopropyl phosphorofluoridate in the liver, and has been noted as having sequence similarity, in the region described in this family, with PON1 (P52430 from SWISSPROT) and LRE. ; PDB: 2GHS_A 2DG0_L 2DG1_D 2DSO_D 3E5Z_A 2IAT_A 2IAV_A 2GVV_A 3HLI_A 2GVU_A ....

>PF03088 Str_synth: Strictosidine synthase; InterPro: IPR018119 This entry represents a conserved region found in strictosidine synthase (4

Probab=99.58  E-value=1.7e-14  Score=93.76  Aligned_cols=87  Identities=48%  Similarity=0.872  Sum_probs=70.3

Q ss_pred             ccEEEcCC-CcEEEEeCCCCCCcccccccccccCCCceEEEEeCCCCeeEEeeccccccceEEEcCCCCEEEEEEcCCCe
Q 026118           97 NDVIEASD-GSLYFTVSSTKFTPAEYYLDLVSGEPHGVLLKYDPSTNQTSLVLDGLYFANGVALSEDERFLVVCESWKFR  175 (243)
Q Consensus        97 ~~l~~d~~-G~l~v~~~~~~~~~~~~~~~~~~~~~~g~v~~~~~~~~~~~~~~~~~~~~~gi~~~~dg~~l~v~~~~~~~  175 (243)
                      ++++++++ |.+||++++..|....+...+.++..+|+|++|||.+++.+.+..++..|||+++++|+..++|+++...+
T Consensus         1 ndldv~~~~g~vYfTdsS~~~~~~~~~~~~le~~~~GRll~ydp~t~~~~vl~~~L~fpNGVals~d~~~vlv~Et~~~R   80 (89)
T PF03088_consen    1 NDLDVDQDTGTVYFTDSSSRYDRRDWVYDLLEGRPTGRLLRYDPSTKETTVLLDGLYFPNGVALSPDESFVLVAETGRYR   80 (89)
T ss_dssp             -EEEE-TTT--EEEEES-SS--TTGHHHHHHHT---EEEEEEETTTTEEEEEEEEESSEEEEEE-TTSSEEEEEEGGGTE
T ss_pred             CceeEecCCCEEEEEeCccccCccceeeeeecCCCCcCEEEEECCCCeEEEehhCCCccCeEEEcCCCCEEEEEeccCce
Confidence            47889998 99999999988988877778888899999999999999999999999999999999999999999999999


Q ss_pred             EEEEEeec
Q 026118          176 CVKHFLKV  183 (243)
Q Consensus       176 i~~~~~~~  183 (243)
                      |.+|-+.+
T Consensus        81 i~rywl~G   88 (89)
T PF03088_consen   81 ILRYWLKG   88 (89)
T ss_dssp             EEEEESSS
T ss_pred             EEEEEEeC
Confidence            99997665

3.3.2 from EC), a key enzyme in alkaloid biosynthesis. It catalyses the Pictet-Spengler stereospecific condensation of tryptamine with secologanin to form strictosidine []. The structure of the native enzyme from the Indian medicinal plant Rauvolfia serpentina (Serpentwood) (Devilpepper) represents the first example of a six-bladed four-stranded beta-propeller fold from the plant kingdom [].; GO: 0016844 strictosidine synthase activity, 0009058 biosynthetic process; PDB: 2FPB_A 2V91_B 2FP8_A 3V1S_B 2FPC_A 2VAQ_A 2FP9_B.

>KOG4499 consensus Ca2+-binding protein Regucalcin/SMP30 [Inorganic ion transport and metabolism; Signal transduction mechanisms]

Probab=99.56  E-value=3.2e-13  Score=101.29  Aligned_cols=190  Identities=14%  Similarity=0.147  Sum_probs=118.7

Q ss_pred             CCc-EEEEeCCCcEEEEc-cCCceeEecccCCccccceEEccCC--CEEEEEeCCCc--EEEEe-cCC-cEEEEe---cc
Q 026118           20 NGV-LYTATGDGWIKRMH-PNGTWEDWHQVGSQSLLGLTTTKEN--NVIIVCDSQQG--LLKVS-EEG-VTVLVS---QF   88 (243)
Q Consensus        20 ~g~-l~~~~~~~~i~~~~-~~g~~~~~~~~~~~~~~~i~~~~~g--~l~~v~~~~~g--l~~~~-~~g-~~~~~~---~~   88 (243)
                      .+. +|+--..+.|+|+| ...++.+.... ..|..+.++--.|  .. +++..+..  +..++ ... ...+.+   ..
T Consensus        26 ~~sLl~VDi~ag~v~r~D~~qn~v~ra~ie-~p~~ag~ilpv~~~~q~-~~v~~G~kf~i~nwd~~~~~a~v~~t~~ev~  103 (310)
T KOG4499|consen   26 RQSLLYVDIEAGEVHRYDIEQNKVYRAKIE-GPPSAGFILPVEGGPQE-FAVGCGSKFVIVNWDGVSESAKVYRTLFEVQ  103 (310)
T ss_pred             cceEEEEEeccCceehhhhhhhheEEEEEe-cCcceeEEEEecCCCce-EEEeecceEEEEEcccccceeeeeeeccccC
Confidence            444 55555889999998 33444333222 2222244443222  12 44444443  44444 233 333332   22


Q ss_pred             CCCcccCCccEEEcCCCcEEEEeCCCCCCcccccccccccCCCceEEEEeCCCCeeEEeeccccccceEEEcCCCCEEEE
Q 026118           89 NGSQLRFANDVIEASDGSLYFTVSSTKFTPAEYYLDLVSGEPHGVLLKYDPSTNQTSLVLDGLYFANGVALSEDERFLVV  168 (243)
Q Consensus        89 ~~~~~~~~~~l~~d~~G~l~v~~~~~~~~~~~~~~~~~~~~~~g~v~~~~~~~~~~~~~~~~~~~~~gi~~~~dg~~l~v  168 (243)
                      .....+..++-.+||+|++|.+++... +.       .-....+.||+.-+. ++++.+......+|||+||.|.+.+|+
T Consensus       104 ~d~kknR~NDgkvdP~Gryy~GtMad~-~~-------~le~~~g~Ly~~~~~-h~v~~i~~~v~IsNgl~Wd~d~K~fY~  174 (310)
T KOG4499|consen  104 PDRKKNRLNDGKVDPDGRYYGGTMADF-GD-------DLEPIGGELYSWLAG-HQVELIWNCVGISNGLAWDSDAKKFYY  174 (310)
T ss_pred             chHHhcccccCccCCCCceeeeeeccc-cc-------cccccccEEEEeccC-CCceeeehhccCCccccccccCcEEEE
Confidence            222244556668999999999987521 10       111234556665554 888888888999999999999999999


Q ss_pred             EEcCCCeEEEEE--eecCCCcceEEecc------CCCCCCCceEECCCCCEEEEEecCCc
Q 026118          169 CESWKFRCVKHF--LKVSGRTDREIFID------NLPGGPDNVNLARDGSFWISIIKMDP  220 (243)
Q Consensus       169 ~~~~~~~i~~~~--~~~~~~~~~~~~~~------~~~~~~~~i~~d~~G~lwv~~~~~~~  220 (243)
                      .++.+-.|..|+  ..++.+.+.+.+.+      ...-.|+|+++|.+|+|||+++.++.
T Consensus       175 iDsln~~V~a~dyd~~tG~~snr~~i~dlrk~~~~e~~~PDGm~ID~eG~L~Va~~ng~~  234 (310)
T KOG4499|consen  175 IDSLNYEVDAYDYDCPTGDLSNRKVIFDLRKSQPFESLEPDGMTIDTEGNLYVATFNGGT  234 (310)
T ss_pred             EccCceEEeeeecCCCcccccCcceeEEeccCCCcCCCCCCcceEccCCcEEEEEecCcE
Confidence            999999995555  55665665555433      12347999999999999999998864

>TIGR02604 Piru_Ver_Nterm putative membrane-bound dehydrogenase domain

Probab=99.56  E-value=7.4e-13  Score=110.38  Aligned_cols=173  Identities=21%  Similarity=0.281  Sum_probs=117.0

Q ss_pred             ceecccc-cCCcccEEEcCCCcEEEEeC------------C-CcEEEEc-c--CCce---eEecccCCccccceEEccCC
Q 026118            2 IKLGEGI-VNHPEDVSVDGNGVLYTATG------------D-GWIKRMH-P--NGTW---EDWHQVGSQSLLGLTTTKEN   61 (243)
Q Consensus         2 ~~~~~g~-~~~p~~i~~d~~g~l~~~~~------------~-~~i~~~~-~--~g~~---~~~~~~~~~~~~~i~~~~~g   61 (243)
                      +++++.| +..|..|++|++|+||+++.            . ++|+++. .  +|+.   +.+......|. +|++.++|
T Consensus         5 ~l~A~~p~~~~P~~ia~d~~G~l~V~e~~~y~~~~~~~~~~~~rI~~l~d~dgdG~~d~~~vfa~~l~~p~-Gi~~~~~G   83 (367)
T TIGR02604         5 TLFAAEPLLRNPIAVCFDERGRLWVAEGITYSRPAGRQGPLGDRILILEDADGDGKYDKSNVFAEELSMVT-GLAVAVGG   83 (367)
T ss_pred             EEEECCCccCCCceeeECCCCCEEEEeCCcCCCCCCCCCCCCCEEEEEEcCCCCCCcceeEEeecCCCCcc-ceeEecCC
Confidence            4566664 68999999999999999962            1 3788887 2  4553   44444445678 99999888


Q ss_pred             CEEEEEeCCCcEEEEe-cC--C-----cEEEEeccCCC---cccCCccEEEcCCCcEEEEeCCCCCCcccc--ccccccc
Q 026118           62 NVIIVCDSQQGLLKVS-EE--G-----VTVLVSQFNGS---QLRFANDVIEASDGSLYFTVSSTKFTPAEY--YLDLVSG  128 (243)
Q Consensus        62 ~l~~v~~~~~gl~~~~-~~--g-----~~~~~~~~~~~---~~~~~~~l~~d~~G~l~v~~~~~~~~~~~~--~~~~~~~  128 (243)
                       + ||+. ...|+++. .+  +     .+.+.......   ....++++++++||.||++...........  ..+....
T Consensus        84 -l-yV~~-~~~i~~~~d~~gdg~ad~~~~~l~~~~~~~~~~~~~~~~~l~~gpDG~LYv~~G~~~~~~~~~~~~~~~~~~  160 (367)
T TIGR02604        84 -V-YVAT-PPDILFLRDKDGDDKADGEREVLLSGFGGQINNHHHSLNSLAWGPDGWLYFNHGNTLASKVTRPGTSDESRQ  160 (367)
T ss_pred             -E-EEeC-CCeEEEEeCCCCCCCCCCccEEEEEccCCCCCcccccccCceECCCCCEEEecccCCCceeccCCCccCccc
Confidence             7 8986 45788884 32  2     23344333222   245688999999999999875321100000  0001112


Q ss_pred             CCCceEEEEeCCCCeeEEeeccccccceEEEcCCCCEEEEEEcCCCeEEEE
Q 026118          129 EPHGVLLKYDPSTNQTSLVLDGLYFANGVALSEDERFLVVCESWKFRCVKH  179 (243)
Q Consensus       129 ~~~g~v~~~~~~~~~~~~~~~~~~~~~gi~~~~dg~~l~v~~~~~~~i~~~  179 (243)
                      ...+.|+++++++++++.+..+...|+|++++++|+ +|+++.......++
T Consensus       161 ~~~g~i~r~~pdg~~~e~~a~G~rnp~Gl~~d~~G~-l~~tdn~~~~~~~i  210 (367)
T TIGR02604       161 GLGGGLFRYNPDGGKLRVVAHGFQNPYGHSVDSWGD-VFFCDNDDPPLCRV  210 (367)
T ss_pred             ccCceEEEEecCCCeEEEEecCcCCCccceECCCCC-EEEEccCCCceeEE
Confidence            234789999999989998888889999999999998 89987654444443

All proteins that score above the trusted cutoff score of 45 to this model are large proteins of either Pirellula sp. 1 or Verrucomicrobium spinosum. These proteins all contain, in addition to this domain, several hundred residues of highly variable sequence, and then a well-conserved C-terminal domain (TIGR02603) that features a putative cytochrome c-type heme binding motif CXXCH. The membrane-bound L-sorbosone dehydrogenase from Acetobacter liquefaciens (Gluconacetobacter liquefaciens) is homologous to this domain but lacks additional sequence regions shared by members of this family and belongs to a different clade of the larger family of homologs. It and its closely related homologs are excluded from the this model by scoring between the trusted (45) and noise (18) cutoffs.

>PF10282 Lactonase: Lactonase, 7-bladed beta-propeller; InterPro: IPR019405 6-phosphogluconolactonases (6PGL) 3

Probab=99.53  E-value=7.6e-12  Score=103.56  Aligned_cols=193  Identities=17%  Similarity=0.234  Sum_probs=122.2

Q ss_pred             cCCcccEEEcCCC-cEEEEeC----CCcEEEEc--cC-CceeEec---ccCCccccceEEccCCCEEEEEeCCCc-EEEE
Q 026118            9 VNHPEDVSVDGNG-VLYTATG----DGWIKRMH--PN-GTWEDWH---QVGSQSLLGLTTTKENNVIIVCDSQQG-LLKV   76 (243)
Q Consensus         9 ~~~p~~i~~d~~g-~l~~~~~----~~~i~~~~--~~-g~~~~~~---~~~~~~~~~i~~~~~g~l~~v~~~~~g-l~~~   76 (243)
                      ..+|..|++++++ .||++..    .+.|..+.  ++ ++.+...   .....|. .+++++++++||++++..| +..+
T Consensus        36 ~~~Ps~l~~~~~~~~LY~~~e~~~~~g~v~~~~i~~~~g~L~~~~~~~~~g~~p~-~i~~~~~g~~l~vany~~g~v~v~  114 (345)
T PF10282_consen   36 GENPSWLAVSPDGRRLYVVNEGSGDSGGVSSYRIDPDTGTLTLLNSVPSGGSSPC-HIAVDPDGRFLYVANYGGGSVSVF  114 (345)
T ss_dssp             SSSECCEEE-TTSSEEEEEETTSSTTTEEEEEEEETTTTEEEEEEEEEESSSCEE-EEEECTTSSEEEEEETTTTEEEEE
T ss_pred             CCCCceEEEEeCCCEEEEEEccccCCCCEEEEEECCCcceeEEeeeeccCCCCcE-EEEEecCCCEEEEEEccCCeEEEE
Confidence            4789999999866 6898874    45675554  55 6655432   2345677 8999999998899997655 4444


Q ss_pred             e--cCC-cEEEEec-------cC--CCcccCCccEEEcCCCc-EEEEeCCCCCCcccccccccccCCCceEEE--EeCCC
Q 026118           77 S--EEG-VTVLVSQ-------FN--GSQLRFANDVIEASDGS-LYFTVSSTKFTPAEYYLDLVSGEPHGVLLK--YDPST  141 (243)
Q Consensus        77 ~--~~g-~~~~~~~-------~~--~~~~~~~~~l~~d~~G~-l~v~~~~~~~~~~~~~~~~~~~~~~g~v~~--~~~~~  141 (243)
                      +  .+| .......       +.  -+....+.++.++|+|+ +|+++.+                 ...|+.  ++..+
T Consensus       115 ~l~~~g~l~~~~~~~~~~g~g~~~~rq~~~h~H~v~~~pdg~~v~v~dlG-----------------~D~v~~~~~~~~~  177 (345)
T PF10282_consen  115 PLDDDGSLGEVVQTVRHEGSGPNPDRQEGPHPHQVVFSPDGRFVYVPDLG-----------------ADRVYVYDIDDDT  177 (345)
T ss_dssp             EECTTSEEEEEEEEEESEEEESSTTTTSSTCEEEEEE-TTSSEEEEEETT-----------------TTEEEEEEE-TTS
T ss_pred             EccCCcccceeeeecccCCCCCcccccccccceeEEECCCCCEEEEEecC-----------------CCEEEEEEEeCCC
Confidence            4  446 3322110       11  12235678899999987 7777654                 234554  55444


Q ss_pred             CeeEEe----eccccccceEEEcCCCCEEEEEEcCCCeEEEEEee--cCCCcceEEeccC---CC--CCCCceEECCCCC
Q 026118          142 NQTSLV----LDGLYFANGVALSEDERFLVVCESWKFRCVKHFLK--VSGRTDREIFIDN---LP--GGPDNVNLARDGS  210 (243)
Q Consensus       142 ~~~~~~----~~~~~~~~gi~~~~dg~~l~v~~~~~~~i~~~~~~--~~~~~~~~~~~~~---~~--~~~~~i~~d~~G~  210 (243)
                      +++...    ......|..|+|+++++++|+.+..++.|..|+.+  .+.+...+.+...   ..  ..+.+|+++++|+
T Consensus       178 ~~l~~~~~~~~~~G~GPRh~~f~pdg~~~Yv~~e~s~~v~v~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~i~ispdg~  257 (345)
T PF10282_consen  178 GKLTPVDSIKVPPGSGPRHLAFSPDGKYAYVVNELSNTVSVFDYDPSDGSLTEIQTISTLPEGFTGENAPAEIAISPDGR  257 (345)
T ss_dssp             -TEEEEEEEECSTTSSEEEEEE-TTSSEEEEEETTTTEEEEEEEETTTTEEEEEEEEESCETTSCSSSSEEEEEE-TTSS
T ss_pred             ceEEEeeccccccCCCCcEEEEcCCcCEEEEecCCCCcEEEEeecccCCceeEEEEeeeccccccccCCceeEEEecCCC
Confidence            445442    23446788999999999999999999999999988  3333333333211   11  1577899999998


Q ss_pred             -EEEEEecCC
Q 026118          211 -FWISIIKMD  219 (243)
Q Consensus       211 -lwv~~~~~~  219 (243)
                       ||++.....
T Consensus       258 ~lyvsnr~~~  267 (345)
T PF10282_consen  258 FLYVSNRGSN  267 (345)
T ss_dssp             EEEEEECTTT
T ss_pred             EEEEEeccCC
Confidence             788765543

1.1.31 from EC, which hydrolyses 6-phosphogluconolactone to 6-phosphogluconate is opne of the enzymes in the pentose phosphate pathway. Two families of structurally dissimilar 6PGLs are known to exist: the Escherichia coli (strain K12) YbhE IPR022528 from INTERPRO [] and the Pseudomonas aeruginosa DevB IPR005900 from INTERPRO [] types. This entry contains bacterial 6-phosphogluconolactonases (6PGL) YbhE-type 3.1.1.31 from EC which hydrolyse 6-phosphogluconolactone to 6-phosphogluconate. The entry also contains the fungal muconate lactonizing enzyme carboxy-cis,cis-muconate cyclase 5.5.1.5 from EC and muconate cycloisomerase 5.5.1.1 from EC, which convert cis,cis-muconates to muconolactones and vice versa as part of the microbial beta-ketoadipate pathway. Structures have been reported for the E. coli 6-phosphogluconolactonase and Neurospora crassa muconate cycloisomerase. Structures of proteins in this family have revealed a 7-bladed beta-propeller fold [].; PDB: 3SCY_A 1L0Q_A 3HFQ_B 3FGB_A 1RI6_A 3U4Y_A 3BWS_A 1JOF_H.

>PRK11028 6-phosphogluconolactonase; Provisional

Probab=99.45  E-value=5.8e-11  Score=97.79  Aligned_cols=187  Identities=11%  Similarity=0.111  Sum_probs=114.6

Q ss_pred             CcccEEEcCCCc-EEEEe-CCCcEEEEc--cCCceeE-e--cccCCccccceEEccCCCEEEEEeCCC-cEEEEe-cC-C
Q 026118           11 HPEDVSVDGNGV-LYTAT-GDGWIKRMH--PNGTWED-W--HQVGSQSLLGLTTTKENNVIIVCDSQQ-GLLKVS-EE-G   80 (243)
Q Consensus        11 ~p~~i~~d~~g~-l~~~~-~~~~i~~~~--~~g~~~~-~--~~~~~~~~~~i~~~~~g~l~~v~~~~~-gl~~~~-~~-g   80 (243)
                      .|..|+++++|+ ||++. .++.|..++  .++.... .  ......|. +++++++|+++|+++... .|..++ .+ +
T Consensus        81 ~p~~i~~~~~g~~l~v~~~~~~~v~v~~~~~~g~~~~~~~~~~~~~~~~-~~~~~p~g~~l~v~~~~~~~v~v~d~~~~g  159 (330)
T PRK11028         81 SPTHISTDHQGRFLFSASYNANCVSVSPLDKDGIPVAPIQIIEGLEGCH-SANIDPDNRTLWVPCLKEDRIRLFTLSDDG  159 (330)
T ss_pred             CceEEEECCCCCEEEEEEcCCCeEEEEEECCCCCCCCceeeccCCCccc-EeEeCCCCCEEEEeeCCCCEEEEEEECCCC
Confidence            689999999885 88877 467777776  3443211 1  11123466 889999999878888764 466776 33 4


Q ss_pred             -cEEE-EeccCCCcccCCccEEEcCCCc-EEEEeCCCCCCcccccccccccCCCceE--EEEeCCCCeeEEeec------
Q 026118           81 -VTVL-VSQFNGSQLRFANDVIEASDGS-LYFTVSSTKFTPAEYYLDLVSGEPHGVL--LKYDPSTNQTSLVLD------  149 (243)
Q Consensus        81 -~~~~-~~~~~~~~~~~~~~l~~d~~G~-l~v~~~~~~~~~~~~~~~~~~~~~~g~v--~~~~~~~~~~~~~~~------  149 (243)
                       .... ...........|.+++++|+|+ +|+++..                 .+.|  |.++..+++++.+..      
T Consensus       160 ~l~~~~~~~~~~~~g~~p~~~~~~pdg~~lyv~~~~-----------------~~~v~v~~~~~~~~~~~~~~~~~~~p~  222 (330)
T PRK11028        160 HLVAQEPAEVTTVEGAGPRHMVFHPNQQYAYCVNEL-----------------NSSVDVWQLKDPHGEIECVQTLDMMPA  222 (330)
T ss_pred             cccccCCCceecCCCCCCceEEECCCCCEEEEEecC-----------------CCEEEEEEEeCCCCCEEEEEEEecCCC
Confidence             3211 0101111124688999999987 5666432                 2344  455543455443221      


Q ss_pred             ---cccccceEEEcCCCCEEEEEEcCCCeEEEEEeecCCCcceEEecc-CCCCCCCceEECCCCC-EEEEEe
Q 026118          150 ---GLYFANGVALSEDERFLVVCESWKFRCVKHFLKVSGRTDREIFID-NLPGGPDNVNLARDGS-FWISII  216 (243)
Q Consensus       150 ---~~~~~~gi~~~~dg~~l~v~~~~~~~i~~~~~~~~~~~~~~~~~~-~~~~~~~~i~~d~~G~-lwv~~~  216 (243)
                         ...++..++++|+|++||+++...+.|..|+++.... ..+.... .....|.+++++++|+ ||++..
T Consensus       223 ~~~~~~~~~~i~~~pdg~~lyv~~~~~~~I~v~~i~~~~~-~~~~~~~~~~~~~p~~~~~~~dg~~l~va~~  293 (330)
T PRK11028        223 DFSDTRWAADIHITPDGRHLYACDRTASLISVFSVSEDGS-VLSFEGHQPTETQPRGFNIDHSGKYLIAAGQ  293 (330)
T ss_pred             cCCCCccceeEEECCCCCEEEEecCCCCeEEEEEEeCCCC-eEEEeEEEeccccCCceEECCCCCEEEEEEc
Confidence               1123456899999999999988788999998864321 1111111 1123688999999997 777664

>COG2706 3-carboxymuconate cyclase [Carbohydrate transport and metabolism]

Probab=99.44  E-value=1.5e-10  Score=91.97  Aligned_cols=193  Identities=17%  Similarity=0.199  Sum_probs=125.0

Q ss_pred             CCcccEEEcCCCc-EEEEeC-CCcEEEE--ccCCceeEec----cc---------CCccccceEEccCCCEEEEEeCC-C
Q 026118           10 NHPEDVSVDGNGV-LYTATG-DGWIKRM--HPNGTWEDWH----QV---------GSQSLLGLTTTKENNVIIVCDSQ-Q   71 (243)
Q Consensus        10 ~~p~~i~~d~~g~-l~~~~~-~~~i~~~--~~~g~~~~~~----~~---------~~~~~~~i~~~~~g~l~~v~~~~-~   71 (243)
                      ..|..+++|++|+ |++++. .+.|.++  ..+|.+....    ..         ...+. ...++|++++|++.+.+ +
T Consensus        89 ~~p~yvsvd~~g~~vf~AnY~~g~v~v~p~~~dG~l~~~v~~~~h~g~~p~~rQ~~~h~H-~a~~tP~~~~l~v~DLG~D  167 (346)
T COG2706          89 SPPCYVSVDEDGRFVFVANYHSGSVSVYPLQADGSLQPVVQVVKHTGSGPHERQESPHVH-SANFTPDGRYLVVPDLGTD  167 (346)
T ss_pred             CCCeEEEECCCCCEEEEEEccCceEEEEEcccCCccccceeeeecCCCCCCccccCCccc-eeeeCCCCCEEEEeecCCc
Confidence            4568999999995 677774 4444433  3456433221    00         11234 66789999987888865 5


Q ss_pred             cEEEEe-cCC-cEEEEeccCCCcccCCccEEEcCCCcE-EEEeCCCCCCcccccccccccCCCceEEEEeCCCCeeEEee
Q 026118           72 GLLKVS-EEG-VTVLVSQFNGSQLRFANDVIEASDGSL-YFTVSSTKFTPAEYYLDLVSGEPHGVLLKYDPSTNQTSLVL  148 (243)
Q Consensus        72 gl~~~~-~~g-~~~~~~~~~~~~~~~~~~l~~d~~G~l-~v~~~~~~~~~~~~~~~~~~~~~~g~v~~~~~~~~~~~~~~  148 (243)
                      .++.|+ .+| ...... ..-.+-.+|..|++.|+|++ |+.+-               -...-.+|.|++..++++.+.
T Consensus       168 ri~~y~~~dg~L~~~~~-~~v~~G~GPRHi~FHpn~k~aY~v~E---------------L~stV~v~~y~~~~g~~~~lQ  231 (346)
T COG2706         168 RIFLYDLDDGKLTPADP-AEVKPGAGPRHIVFHPNGKYAYLVNE---------------LNSTVDVLEYNPAVGKFEELQ  231 (346)
T ss_pred             eEEEEEcccCccccccc-cccCCCCCcceEEEcCCCcEEEEEec---------------cCCEEEEEEEcCCCceEEEee
Confidence            688887 666 433222 11134467899999999984 44421               112235788888778877653


Q ss_pred             c---------cccccceEEEcCCCCEEEEEEcCCCeEEEEEeecC--CCcceEEeccCCCCCCCceEECCCCCEEEEEec
Q 026118          149 D---------GLYFANGVALSEDERFLVVCESWKFRCVKHFLKVS--GRTDREIFIDNLPGGPDNVNLARDGSFWISIIK  217 (243)
Q Consensus       149 ~---------~~~~~~gi~~~~dg~~l~v~~~~~~~i~~~~~~~~--~~~~~~~~~~~~~~~~~~i~~d~~G~lwv~~~~  217 (243)
                      .         +..+...|.+++||++||+++.+-++|..|.++..  .+.-.... ....-.|..+.+++.|++.++.++
T Consensus       232 ~i~tlP~dF~g~~~~aaIhis~dGrFLYasNRg~dsI~~f~V~~~~g~L~~~~~~-~teg~~PR~F~i~~~g~~Liaa~q  310 (346)
T COG2706         232 TIDTLPEDFTGTNWAAAIHISPDGRFLYASNRGHDSIAVFSVDPDGGKLELVGIT-PTEGQFPRDFNINPSGRFLIAANQ  310 (346)
T ss_pred             eeccCccccCCCCceeEEEECCCCCEEEEecCCCCeEEEEEEcCCCCEEEEEEEe-ccCCcCCccceeCCCCCEEEEEcc
Confidence            2         22345679999999999999999899998888743  22222222 122335999999999998888777


Q ss_pred             CCc
Q 026118          218 MDP  220 (243)
Q Consensus       218 ~~~  220 (243)
                      .+.
T Consensus       311 ~sd  313 (346)
T COG2706         311 KSD  313 (346)
T ss_pred             CCC
Confidence            653

>PRK11028 6-phosphogluconolactonase; Provisional

Probab=99.41  E-value=2.2e-10  Score=94.40  Aligned_cols=186  Identities=8%  Similarity=0.057  Sum_probs=117.4

Q ss_pred             CCcccEEEcCCCc-EEEEe-CCCcEEEEc--cCCceeEec--ccCCccccceEEccCCCEEEEEeCCC-cEEEEe--cCC
Q 026118           10 NHPEDVSVDGNGV-LYTAT-GDGWIKRMH--PNGTWEDWH--QVGSQSLLGLTTTKENNVIIVCDSQQ-GLLKVS--EEG   80 (243)
Q Consensus        10 ~~p~~i~~d~~g~-l~~~~-~~~~i~~~~--~~g~~~~~~--~~~~~~~~~i~~~~~g~l~~v~~~~~-gl~~~~--~~g   80 (243)
                      ..|..|+++++|. ||++. ..+.|..++  .++++....  .....|. .++++++|+++|++.... .+..++  .++
T Consensus        35 ~~~~~l~~spd~~~lyv~~~~~~~i~~~~~~~~g~l~~~~~~~~~~~p~-~i~~~~~g~~l~v~~~~~~~v~v~~~~~~g  113 (330)
T PRK11028         35 GQVQPMVISPDKRHLYVGVRPEFRVLSYRIADDGALTFAAESPLPGSPT-HISTDHQGRFLFSASYNANCVSVSPLDKDG  113 (330)
T ss_pred             CCCccEEECCCCCEEEEEECCCCcEEEEEECCCCceEEeeeecCCCCce-EEEECCCCCEEEEEEcCCCeEEEEEECCCC
Confidence            4688999999885 88886 567786555  355543322  2234677 899999999879888644 466666  344


Q ss_pred             -c-EEEEeccCCCcccCCccEEEcCCCc-EEEEeCCCCCCcccccccccccCCCceEEEEeCCC-CeeEE-----e-ecc
Q 026118           81 -V-TVLVSQFNGSQLRFANDVIEASDGS-LYFTVSSTKFTPAEYYLDLVSGEPHGVLLKYDPST-NQTSL-----V-LDG  150 (243)
Q Consensus        81 -~-~~~~~~~~~~~~~~~~~l~~d~~G~-l~v~~~~~~~~~~~~~~~~~~~~~~g~v~~~~~~~-~~~~~-----~-~~~  150 (243)
                       . +.+.. ..+  ...+.+++++|+|+ +|+++..                 .+.|..++.++ +.+..     . ...
T Consensus       114 ~~~~~~~~-~~~--~~~~~~~~~~p~g~~l~v~~~~-----------------~~~v~v~d~~~~g~l~~~~~~~~~~~~  173 (330)
T PRK11028        114 IPVAPIQI-IEG--LEGCHSANIDPDNRTLWVPCLK-----------------EDRIRLFTLSDDGHLVAQEPAEVTTVE  173 (330)
T ss_pred             CCCCceee-ccC--CCcccEeEeCCCCCEEEEeeCC-----------------CCEEEEEEECCCCcccccCCCceecCC
Confidence             2 22221 111  24577888999986 5566533                 34566666543 33321     1 122


Q ss_pred             ccccceEEEcCCCCEEEEEEcCCCeEEEEEeec--CCCcceEEecc---C--CCCCCCceEECCCCC-EEEEEe
Q 026118          151 LYFANGVALSEDERFLVVCESWKFRCVKHFLKV--SGRTDREIFID---N--LPGGPDNVNLARDGS-FWISII  216 (243)
Q Consensus       151 ~~~~~gi~~~~dg~~l~v~~~~~~~i~~~~~~~--~~~~~~~~~~~---~--~~~~~~~i~~d~~G~-lwv~~~  216 (243)
                      ...|..++|+|+|+++|+++..++.|..|+++.  +.+...+.+..   .  .+..+..++++++|+ ||++..
T Consensus       174 g~~p~~~~~~pdg~~lyv~~~~~~~v~v~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~i~~~pdg~~lyv~~~  247 (330)
T PRK11028        174 GAGPRHMVFHPNQQYAYCVNELNSSVDVWQLKDPHGEIECVQTLDMMPADFSDTRWAADIHITPDGRHLYACDR  247 (330)
T ss_pred             CCCCceEEECCCCCEEEEEecCCCEEEEEEEeCCCCCEEEEEEEecCCCcCCCCccceeEEECCCCCEEEEecC
Confidence            356889999999999999998889999999873  22222222111   0  112344688999998 788743

>COG3386 Gluconolactonase [Carbohydrate transport and metabolism]

Probab=99.40  E-value=8.1e-11  Score=94.88  Aligned_cols=146  Identities=17%  Similarity=0.276  Sum_probs=101.5

Q ss_pred             ccCCcccEEEcCCCcEEEEeCC------------CcEEEEccCCceeEeccc-CCccccceEEccCCCEEEEEeCC-CcE
Q 026118            8 IVNHPEDVSVDGNGVLYTATGD------------GWIKRMHPNGTWEDWHQV-GSQSLLGLTTTKENNVIIVCDSQ-QGL   73 (243)
Q Consensus         8 ~~~~p~~i~~d~~g~l~~~~~~------------~~i~~~~~~g~~~~~~~~-~~~~~~~i~~~~~g~l~~v~~~~-~gl   73 (243)
                      +..+|..+.++++|++|+++..            |.||++++.+...+.... ...++ ||++++||+.||+++.. ..+
T Consensus       109 ~~~r~ND~~v~pdG~~wfgt~~~~~~~~~~~~~~G~lyr~~p~g~~~~l~~~~~~~~N-Gla~SpDg~tly~aDT~~~~i  187 (307)
T COG3386         109 PLNRPNDGVVDPDGRIWFGDMGYFDLGKSEERPTGSLYRVDPDGGVVRLLDDDLTIPN-GLAFSPDGKTLYVADTPANRI  187 (307)
T ss_pred             CcCCCCceeEcCCCCEEEeCCCccccCccccCCcceEEEEcCCCCEEEeecCcEEecC-ceEECCCCCEEEEEeCCCCeE
Confidence            4578889999999999999833            459999987776665543 45678 99999999887999875 468


Q ss_pred             EEEe-c--CC----cEEEEeccCCCcccCCccEEEcCCCcEEEEeCCCCCCcccccccccccCCCceEEEEeCCCCeeEE
Q 026118           74 LKVS-E--EG----VTVLVSQFNGSQLRFANDVIEASDGSLYFTVSSTKFTPAEYYLDLVSGEPHGVLLKYDPSTNQTSL  146 (243)
Q Consensus        74 ~~~~-~--~g----~~~~~~~~~~~~~~~~~~l~~d~~G~l~v~~~~~~~~~~~~~~~~~~~~~~g~v~~~~~~~~~~~~  146 (243)
                      ++++ .  ++    .+.... . ......|.++++|.+|++|++...                ..++|.+++|+ |++..
T Consensus       188 ~r~~~d~~~g~~~~~~~~~~-~-~~~~G~PDG~~vDadG~lw~~a~~----------------~g~~v~~~~pd-G~l~~  248 (307)
T COG3386         188 HRYDLDPATGPIGGRRGFVD-F-DEEPGLPDGMAVDADGNLWVAAVW----------------GGGRVVRFNPD-GKLLG  248 (307)
T ss_pred             EEEecCcccCccCCcceEEE-c-cCCCCCCCceEEeCCCCEEEeccc----------------CCceEEEECCC-CcEEE
Confidence            8887 3  23    111111 1 112357889999999999974211                12389999999 55444


Q ss_pred             -eeccccccceEEE-cCCCCEEEEEEcCC
Q 026118          147 -VLDGLYFANGVAL-SEDERFLVVCESWK  173 (243)
Q Consensus       147 -~~~~~~~~~gi~~-~~dg~~l~v~~~~~  173 (243)
                       +.-....+..++| .++.++|||+....
T Consensus       249 ~i~lP~~~~t~~~FgG~~~~~L~iTs~~~  277 (307)
T COG3386         249 EIKLPVKRPTNPAFGGPDLNTLYITSARS  277 (307)
T ss_pred             EEECCCCCCccceEeCCCcCEEEEEecCC
Confidence             3333356666777 45678899997654

>PF07995 GSDH: Glucose / Sorbosone dehydrogenase; InterPro: IPR012938 Proteins containing this domain are thought to be glucose/sorbosone dehydrogenases

Probab=99.35  E-value=1.4e-10  Score=95.33  Aligned_cols=156  Identities=20%  Similarity=0.287  Sum_probs=88.2

Q ss_pred             cCCcccEEEcCCCcEEEEeCCCcEEEEccCCce-eEecc-------cCCccccceEEccC----CCEEEEEeCC------
Q 026118            9 VNHPEDVSVDGNGVLYTATGDGWIKRMHPNGTW-EDWHQ-------VGSQSLLGLTTTKE----NNVIIVCDSQ------   70 (243)
Q Consensus         9 ~~~p~~i~~d~~g~l~~~~~~~~i~~~~~~g~~-~~~~~-------~~~~~~~~i~~~~~----g~l~~v~~~~------   70 (243)
                      +..|.+|++.+||+||++...|.|++++.++.. ..+..       ...... +|+++++    +.+ |++...      
T Consensus         1 L~~P~~~a~~pdG~l~v~e~~G~i~~~~~~g~~~~~v~~~~~v~~~~~~gll-gia~~p~f~~n~~l-Yv~~t~~~~~~~   78 (331)
T PF07995_consen    1 LNNPRSMAFLPDGRLLVAERSGRIWVVDKDGSLKTPVADLPEVFADGERGLL-GIAFHPDFASNGYL-YVYYTNADEDGG   78 (331)
T ss_dssp             ESSEEEEEEETTSCEEEEETTTEEEEEETTTEECEEEEE-TTTBTSTTBSEE-EEEE-TTCCCC-EE-EEEEEEE-TSSS
T ss_pred             CCCceEEEEeCCCcEEEEeCCceEEEEeCCCcCcceecccccccccccCCcc-cceeccccCCCCEE-EEEEEcccCCCC
Confidence            468999999999999999999999999866654 22211       112235 8899984    666 887652      


Q ss_pred             ---CcEEEEe-cCC------cEEEEeccCC--CcccCCccEEEcCCCcEEEEeCCCCCCcccccccccccCCCceEEEEe
Q 026118           71 ---QGLLKVS-EEG------VTVLVSQFNG--SQLRFANDVIEASDGSLYFTVSSTKFTPAEYYLDLVSGEPHGVLLKYD  138 (243)
Q Consensus        71 ---~gl~~~~-~~g------~~~~~~~~~~--~~~~~~~~l~~d~~G~l~v~~~~~~~~~~~~~~~~~~~~~~g~v~~~~  138 (243)
                         ..|.++. ..+      .+.+......  ........|+++|||.||++.-.....    ..........+.|+|++
T Consensus        79 ~~~~~v~r~~~~~~~~~~~~~~~l~~~~p~~~~~~H~g~~l~fgpDG~LYvs~G~~~~~----~~~~~~~~~~G~ilri~  154 (331)
T PF07995_consen   79 DNDNRVVRFTLSDGDGDLSSEEVLVTGLPDTSSGNHNGGGLAFGPDGKLYVSVGDGGND----DNAQDPNSLRGKILRID  154 (331)
T ss_dssp             SEEEEEEEEEEETTSCEEEEEEEEEEEEES-CSSSS-EEEEEE-TTSEEEEEEB-TTTG----GGGCSTTSSTTEEEEEE
T ss_pred             CcceeeEEEeccCCccccccceEEEEEeCCCCCCCCCCccccCCCCCcEEEEeCCCCCc----ccccccccccceEEEec
Confidence               1477776 322      2223222111  222344569999999999986432110    00111123457788888


Q ss_pred             CCCC-------------eeEEeeccccccceEEEcCC-CCEEEEEEc
Q 026118          139 PSTN-------------QTSLVLDGLYFANGVALSED-ERFLVVCES  171 (243)
Q Consensus       139 ~~~~-------------~~~~~~~~~~~~~gi~~~~d-g~~l~v~~~  171 (243)
                      +++.             ..+.++.++..|.+++|++. |+ ||+++.
T Consensus       155 ~dG~~p~dnP~~~~~~~~~~i~A~GlRN~~~~~~d~~tg~-l~~~d~  200 (331)
T PF07995_consen  155 PDGSIPADNPFVGDDGADSEIYAYGLRNPFGLAFDPNTGR-LWAADN  200 (331)
T ss_dssp             TTSSB-TTSTTTTSTTSTTTEEEE--SEEEEEEEETTTTE-EEEEEE
T ss_pred             ccCcCCCCCccccCCCceEEEEEeCCCccccEEEECCCCc-EEEEcc
Confidence            7732             12233445556666777766 44 666653

The best characterised of these proteins is soluble glucose dehydrogenase (P13650 from SWISSPROT) from Acinetobacter calcoaceticus, which oxidises glucose to gluconolactone. The enzyme is a calcium-dependent homodimer which uses PQQ as a cofactor [].; GO: 0016901 oxidoreductase activity, acting on the CH-OH group of donors, quinone or similar compound as acceptor, 0048038 quinone binding, 0005975 carbohydrate metabolic process; PDB: 2ISM_A 2WG3_D 3HO5_A 3HO4_A 3HO3_A 2WFT_A 2WG4_B 2WFX_B 1CRU_A 1CQ1_B ....

>COG2706 3-carboxymuconate cyclase [Carbohydrate transport and metabolism]

Probab=99.33  E-value=1.1e-09  Score=87.05  Aligned_cols=193  Identities=11%  Similarity=0.167  Sum_probs=123.1

Q ss_pred             cCCcccEEEcCCC-cEEEEeC---CCcE--EEEcc-CCceeEecc--cCCc-cccceEEccCCCEEEEEeCCCcEEEE-e
Q 026118            9 VNHPEDVSVDGNG-VLYTATG---DGWI--KRMHP-NGTWEDWHQ--VGSQ-SLLGLTTTKENNVIIVCDSQQGLLKV-S   77 (243)
Q Consensus         9 ~~~p~~i~~d~~g-~l~~~~~---~~~i--~~~~~-~g~~~~~~~--~~~~-~~~~i~~~~~g~l~~v~~~~~gl~~~-~   77 (243)
                      +.+|.-|++++++ .||++..   .++|  |++|+ +|+......  ..+. |. .+++|++|++++++++..|-+.+ .
T Consensus        39 ~~nptyl~~~~~~~~LY~v~~~~~~ggvaay~iD~~~G~Lt~ln~~~~~g~~p~-yvsvd~~g~~vf~AnY~~g~v~v~p  117 (346)
T COG2706          39 LGNPTYLAVNPDQRHLYVVNEPGEEGGVAAYRIDPDDGRLTFLNRQTLPGSPPC-YVSVDEDGRFVFVANYHSGSVSVYP  117 (346)
T ss_pred             cCCCceEEECCCCCEEEEEEecCCcCcEEEEEEcCCCCeEEEeeccccCCCCCe-EEEECCCCCEEEEEEccCceEEEEE
Confidence            6789999999988 6998872   4666  56664 477665432  2233 46 89999999988999977663333 2


Q ss_pred             --cCC-cEEE---EeccCC-----CcccCCccEEEcCCCc-EEEEeCCCCCCcccccccccccCCCceEEEEeCCCCeeE
Q 026118           78 --EEG-VTVL---VSQFNG-----SQLRFANDVIEASDGS-LYFTVSSTKFTPAEYYLDLVSGEPHGVLLKYDPSTNQTS  145 (243)
Q Consensus        78 --~~g-~~~~---~~~~~~-----~~~~~~~~l~~d~~G~-l~v~~~~~~~~~~~~~~~~~~~~~~g~v~~~~~~~~~~~  145 (243)
                        .+| ....   ......     +....+....++|+|+ +++.|-+                 ..+|+.|+.+.|.+.
T Consensus       118 ~~~dG~l~~~v~~~~h~g~~p~~rQ~~~h~H~a~~tP~~~~l~v~DLG-----------------~Dri~~y~~~dg~L~  180 (346)
T COG2706         118 LQADGSLQPVVQVVKHTGSGPHERQESPHVHSANFTPDGRYLVVPDLG-----------------TDRIFLYDLDDGKLT  180 (346)
T ss_pred             cccCCccccceeeeecCCCCCCccccCCccceeeeCCCCCEEEEeecC-----------------CceEEEEEcccCccc
Confidence              456 3221   111111     1122355667899996 5555433                 236666666667776


Q ss_pred             Eee----ccccccceEEEcCCCCEEEEEEcCCCeEEEEEeec--CCCcceEEeccCCC-----CCCCceEECCCCC-EEE
Q 026118          146 LVL----DGLYFANGVALSEDERFLVVCESWKFRCVKHFLKV--SGRTDREIFIDNLP-----GGPDNVNLARDGS-FWI  213 (243)
Q Consensus       146 ~~~----~~~~~~~gi~~~~dg~~l~v~~~~~~~i~~~~~~~--~~~~~~~~~~~~~~-----~~~~~i~~d~~G~-lwv  213 (243)
                      +..    .....|.=|+|+|+++..|+....+++|..+..++  +.+...+.....+.     .....|.++++|+ ||+
T Consensus       181 ~~~~~~v~~G~GPRHi~FHpn~k~aY~v~EL~stV~v~~y~~~~g~~~~lQ~i~tlP~dF~g~~~~aaIhis~dGrFLYa  260 (346)
T COG2706         181 PADPAEVKPGAGPRHIVFHPNGKYAYLVNELNSTVDVLEYNPAVGKFEELQTIDTLPEDFTGTNWAAAIHISPDGRFLYA  260 (346)
T ss_pred             cccccccCCCCCcceEEEcCCCcEEEEEeccCCEEEEEEEcCCCceEEEeeeeccCccccCCCCceeEEEECCCCCEEEE
Confidence            542    33456777999999999999999999999988876  33444444322111     1334489999999 566


Q ss_pred             EEecCCc
Q 026118          214 SIIKMDP  220 (243)
Q Consensus       214 ~~~~~~~  220 (243)
                      ++ .+..
T Consensus       261 sN-Rg~d  266 (346)
T COG2706         261 SN-RGHD  266 (346)
T ss_pred             ec-CCCC
Confidence            54 4433

>COG3391 Uncharacterized conserved protein [Function unknown]

Probab=99.19  E-value=1.4e-08  Score=85.15  Aligned_cols=185  Identities=17%  Similarity=0.188  Sum_probs=127.4

Q ss_pred             cCCcccEEEcCCCc-EEEEe-CCCcEEEEc-cCCceeEecccCCccccceEEccCCCEEEEEeCC---CcEEEEe-cCCc
Q 026118            9 VNHPEDVSVDGNGV-LYTAT-GDGWIKRMH-PNGTWEDWHQVGSQSLLGLTTTKENNVIIVCDSQ---QGLLKVS-EEGV   81 (243)
Q Consensus         9 ~~~p~~i~~d~~g~-l~~~~-~~~~i~~~~-~~g~~~~~~~~~~~~~~~i~~~~~g~l~~v~~~~---~gl~~~~-~~g~   81 (243)
                      ...|.++++.+.|. +|+.+ ..+.|..++ ...+..........|. +++++++++.+|+++..   .-+..+| .++ 
T Consensus        73 ~~~p~~i~v~~~~~~vyv~~~~~~~v~vid~~~~~~~~~~~vG~~P~-~~~~~~~~~~vYV~n~~~~~~~vsvid~~t~-  150 (381)
T COG3391          73 GVYPAGVAVNPAGNKVYVTTGDSNTVSVIDTATNTVLGSIPVGLGPV-GLAVDPDGKYVYVANAGNGNNTVSVIDAATN-  150 (381)
T ss_pred             CccccceeeCCCCCeEEEecCCCCeEEEEcCcccceeeEeeeccCCc-eEEECCCCCEEEEEecccCCceEEEEeCCCC-
Confidence            36789999998775 99988 557889998 3344444444445788 99999999777999973   3477777 444 


Q ss_pred             EEEEeccCCCcccCCccEEEcCCCc-EEEEeCCCCCCcccccccccccCCCceEEEEeCCCCeeEE-----eeccccccc
Q 026118           82 TVLVSQFNGSQLRFANDVIEASDGS-LYFTVSSTKFTPAEYYLDLVSGEPHGVLLKYDPSTNQTSL-----VLDGLYFAN  155 (243)
Q Consensus        82 ~~~~~~~~~~~~~~~~~l~~d~~G~-l~v~~~~~~~~~~~~~~~~~~~~~~g~v~~~~~~~~~~~~-----~~~~~~~~~  155 (243)
                      +.+...+.+.   .|.+++++|+|. +|+++..                 .+.|..+|.++..+.+     .......|.
T Consensus       151 ~~~~~~~vG~---~P~~~a~~p~g~~vyv~~~~-----------------~~~v~vi~~~~~~v~~~~~~~~~~~~~~P~  210 (381)
T COG3391         151 KVTATIPVGN---TPTGVAVDPDGNKVYVTNSD-----------------DNTVSVIDTSGNSVVRGSVGSLVGVGTGPA  210 (381)
T ss_pred             eEEEEEecCC---CcceEEECCCCCeEEEEecC-----------------CCeEEEEeCCCcceeccccccccccCCCCc
Confidence            2222222222   457899999997 9998733                 4689999988665553     122346789


Q ss_pred             eEEEcCCCCEEEEEEcCC--CeEEEEEeecCCCcceEEeccCCCCCCCceEECCCCC-EEEEEec
Q 026118          156 GVALSEDERFLVVCESWK--FRCVKHFLKVSGRTDREIFIDNLPGGPDNVNLARDGS-FWISIIK  217 (243)
Q Consensus       156 gi~~~~dg~~l~v~~~~~--~~i~~~~~~~~~~~~~~~~~~~~~~~~~~i~~d~~G~-lwv~~~~  217 (243)
                      +++++++|+.+|+++..+  +.+.+++........... ..... .|.+++.+++|. +|+....
T Consensus       211 ~i~v~~~g~~~yV~~~~~~~~~v~~id~~~~~v~~~~~-~~~~~-~~~~v~~~p~g~~~yv~~~~  273 (381)
T COG3391         211 GIAVDPDGNRVYVANDGSGSNNVLKIDTATGNVTATDL-PVGSG-APRGVAVDPAGKAAYVANSQ  273 (381)
T ss_pred             eEEECCCCCEEEEEeccCCCceEEEEeCCCceEEEecc-ccccC-CCCceeECCCCCEEEEEecC
Confidence            999999999999998876  588888876532222111 11223 688899999998 6666444

>TIGR03866 PQQ_ABC_repeats PQQ-dependent catabolism-associated beta-propeller protein

Probab=99.17  E-value=5.3e-08  Score=78.41  Aligned_cols=186  Identities=12%  Similarity=0.102  Sum_probs=113.8

Q ss_pred             CCcccEEEcCCCc-EEEEe-CCCcEEEEc-cCCceeEecccCCccccceEEccCCCEEEEEeCC-CcEEEEe-cCCcEEE
Q 026118           10 NHPEDVSVDGNGV-LYTAT-GDGWIKRMH-PNGTWEDWHQVGSQSLLGLTTTKENNVIIVCDSQ-QGLLKVS-EEGVTVL   84 (243)
Q Consensus        10 ~~p~~i~~d~~g~-l~~~~-~~~~i~~~~-~~g~~~~~~~~~~~~~~~i~~~~~g~l~~v~~~~-~gl~~~~-~~g~~~~   84 (243)
                      ..|.+++++++|. +|++. .++.|+.++ .+++..........+. .++++++|+.+|++... +.+..++ .++ +.+
T Consensus        31 ~~~~~l~~~~dg~~l~~~~~~~~~v~~~d~~~~~~~~~~~~~~~~~-~~~~~~~g~~l~~~~~~~~~l~~~d~~~~-~~~  108 (300)
T TIGR03866        31 QRPRGITLSKDGKLLYVCASDSDTIQVIDLATGEVIGTLPSGPDPE-LFALHPNGKILYIANEDDNLVTVIDIETR-KVL  108 (300)
T ss_pred             CCCCceEECCCCCEEEEEECCCCeEEEEECCCCcEEEeccCCCCcc-EEEECCCCCEEEEEcCCCCeEEEEECCCC-eEE
Confidence            3577899999885 66665 667888898 4455443222223455 78899999875777543 4577777 444 111


Q ss_pred             EeccCCCcccCCccEEEcCCCcEEEEeCCCCCCcccccccccccCCCceEEEEeCCCCeeEEeeccccccceEEEcCCCC
Q 026118           85 VSQFNGSQLRFANDVIEASDGSLYFTVSSTKFTPAEYYLDLVSGEPHGVLLKYDPSTNQTSLVLDGLYFANGVALSEDER  164 (243)
Q Consensus        85 ~~~~~~~~~~~~~~l~~d~~G~l~v~~~~~~~~~~~~~~~~~~~~~~g~v~~~~~~~~~~~~~~~~~~~~~gi~~~~dg~  164 (243)
                      .. ...  ...+.+++++++|.++++...                ....++.++..+++..........+..++++++++
T Consensus       109 ~~-~~~--~~~~~~~~~~~dg~~l~~~~~----------------~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~s~dg~  169 (300)
T TIGR03866       109 AE-IPV--GVEPEGMAVSPDGKIVVNTSE----------------TTNMAHFIDTKTYEIVDNVLVDQRPRFAEFTADGK  169 (300)
T ss_pred             eE-eeC--CCCcceEEECCCCCEEEEEec----------------CCCeEEEEeCCCCeEEEEEEcCCCccEEEECCCCC
Confidence            11 111  123568899999987776432                11245667887665543322234577899999999


Q ss_pred             EEEEEEcCCCeEEEEEeecCCCcceEEecc-C---CCCCCCceEECCCCC-EEEEEe
Q 026118          165 FLVVCESWKFRCVKHFLKVSGRTDREIFID-N---LPGGPDNVNLARDGS-FWISII  216 (243)
Q Consensus       165 ~l~v~~~~~~~i~~~~~~~~~~~~~~~~~~-~---~~~~~~~i~~d~~G~-lwv~~~  216 (243)
                      .||++...++.|..|+...........+.. .   ....|.+++++++|+ +|++..
T Consensus       170 ~l~~~~~~~~~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~i~~s~dg~~~~~~~~  226 (300)
T TIGR03866       170 ELWVSSEIGGTVSVIDVATRKVIKKITFEIPGVHPEAVQPVGIKLTKDGKTAFVALG  226 (300)
T ss_pred             EEEEEcCCCCEEEEEEcCcceeeeeeeecccccccccCCccceEECCCCCEEEEEcC
Confidence            888876667889999987542211111110 0   112356788999998 466543

Members of this protein family consist of seven repeats each of the YVTN family beta-propeller repeat (see TIGR02276). Members occur invariably as part of a transport operon that is associated with PQQ-dependent catabolism of alcohols such as phenylethanol.

>TIGR02604 Piru_Ver_Nterm putative membrane-bound dehydrogenase domain

Probab=99.15  E-value=3.7e-09  Score=88.28  Aligned_cols=141  Identities=12%  Similarity=0.107  Sum_probs=93.6

Q ss_pred             CccccceEEccCCCEEEEEeC------------C-CcEEEEe-c--CC-cEEEEeccCCCcccCCccEEEcCCCcEEEEe
Q 026118           49 SQSLLGLTTTKENNVIIVCDS------------Q-QGLLKVS-E--EG-VTVLVSQFNGSQLRFANDVIEASDGSLYFTV  111 (243)
Q Consensus        49 ~~~~~~i~~~~~g~l~~v~~~------------~-~gl~~~~-~--~g-~~~~~~~~~~~~~~~~~~l~~d~~G~l~v~~  111 (243)
                      .+|. +|++|++|++ ||+..            . ..|+++. .  +| ......-..  ....|.+|++.++| +|+++
T Consensus        14 ~~P~-~ia~d~~G~l-~V~e~~~y~~~~~~~~~~~~rI~~l~d~dgdG~~d~~~vfa~--~l~~p~Gi~~~~~G-lyV~~   88 (367)
T TIGR02604        14 RNPI-AVCFDERGRL-WVAEGITYSRPAGRQGPLGDRILILEDADGDGKYDKSNVFAE--ELSMVTGLAVAVGG-VYVAT   88 (367)
T ss_pred             CCCc-eeeECCCCCE-EEEeCCcCCCCCCCCCCCCCEEEEEEcCCCCCCcceeEEeec--CCCCccceeEecCC-EEEeC
Confidence            5688 9999999999 99963            1 2577776 3  34 322111111  24578899999999 99984


Q ss_pred             CCCCCCcccccccccccCCCceEEEE-eCCC-----CeeEEeecc--------ccccceEEEcCCCCEEEEEEcC-----
Q 026118          112 SSTKFTPAEYYLDLVSGEPHGVLLKY-DPST-----NQTSLVLDG--------LYFANGVALSEDERFLVVCESW-----  172 (243)
Q Consensus       112 ~~~~~~~~~~~~~~~~~~~~g~v~~~-~~~~-----~~~~~~~~~--------~~~~~gi~~~~dg~~l~v~~~~-----  172 (243)
                      .                   ..|+++ +.+.     ++.+.+...        ...++++++.+||+ ||++...     
T Consensus        89 ~-------------------~~i~~~~d~~gdg~ad~~~~~l~~~~~~~~~~~~~~~~~l~~gpDG~-LYv~~G~~~~~~  148 (367)
T TIGR02604        89 P-------------------PDILFLRDKDGDDKADGEREVLLSGFGGQINNHHHSLNSLAWGPDGW-LYFNHGNTLASK  148 (367)
T ss_pred             C-------------------CeEEEEeCCCCCCCCCCccEEEEEccCCCCCcccccccCceECCCCC-EEEecccCCCce
Confidence            3                   268777 3321     133334322        23478999999998 9997542     


Q ss_pred             --------------CCeEEEEEeecCCCcceEEeccCCCCCCCceEECCCCCEEEEEecC
Q 026118          173 --------------KFRCVKHFLKVSGRTDREIFIDNLPGGPDNVNLARDGSFWISIIKM  218 (243)
Q Consensus       173 --------------~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~i~~d~~G~lwv~~~~~  218 (243)
                                    .+.|+++++++.   ..+++... ...|.++++|++|++|++++..
T Consensus       149 ~~~~~~~~~~~~~~~g~i~r~~pdg~---~~e~~a~G-~rnp~Gl~~d~~G~l~~tdn~~  204 (367)
T TIGR02604       149 VTRPGTSDESRQGLGGGLFRYNPDGG---KLRVVAHG-FQNPYGHSVDSWGDVFFCDNDD  204 (367)
T ss_pred             eccCCCccCcccccCceEEEEecCCC---eEEEEecC-cCCCccceECCCCCEEEEccCC
Confidence                          146888888763   34555433 3358899999999999988754

All proteins that score above the trusted cutoff score of 45 to this model are large proteins of either Pirellula sp. 1 or Verrucomicrobium spinosum. These proteins all contain, in addition to this domain, several hundred residues of highly variable sequence, and then a well-conserved C-terminal domain (TIGR02603) that features a putative cytochrome c-type heme binding motif CXXCH. The membrane-bound L-sorbosone dehydrogenase from Acetobacter liquefaciens (Gluconacetobacter liquefaciens) is homologous to this domain but lacks additional sequence regions shared by members of this family and belongs to a different clade of the larger family of homologs. It and its closely related homologs are excluded from the this model by scoring between the trusted (45) and noise (18) cutoffs.

>PF06977 SdiA-regulated: SdiA-regulated; InterPro: IPR009722 This entry represents a conserved region approximately 100 residues long within a number of hypothetical bacterial proteins that may be regulated by SdiA, a member of the LuxR family of transcriptional regulators []

Probab=99.10  E-value=3.7e-08  Score=77.01  Aligned_cols=192  Identities=11%  Similarity=0.091  Sum_probs=104.5

Q ss_pred             ccccCCcccEEEcCC-CcEEEEe-CCCcEEEEccCCceeEec-cc-CCccccceEEccCCCEEEEEeCC-CcEEEEe-c-
Q 026118            6 EGIVNHPEDVSVDGN-GVLYTAT-GDGWIKRMHPNGTWEDWH-QV-GSQSLLGLTTTKENNVIIVCDSQ-QGLLKVS-E-   78 (243)
Q Consensus         6 ~g~~~~p~~i~~d~~-g~l~~~~-~~~~i~~~~~~g~~~~~~-~~-~~~~~~~i~~~~~g~l~~v~~~~-~gl~~~~-~-   78 (243)
                      .|...++.+|+++++ ++||+.+ ..+.|+.++.+|++..-. .. .+.+. +|++-.++.+ .++... +.++.+. . 
T Consensus        18 ~g~~~e~SGLTy~pd~~tLfaV~d~~~~i~els~~G~vlr~i~l~g~~D~E-gI~y~g~~~~-vl~~Er~~~L~~~~~~~   95 (248)
T PF06977_consen   18 PGILDELSGLTYNPDTGTLFAVQDEPGEIYELSLDGKVLRRIPLDGFGDYE-GITYLGNGRY-VLSEERDQRLYIFTIDD   95 (248)
T ss_dssp             TT--S-EEEEEEETTTTEEEEEETTTTEEEEEETT--EEEEEE-SS-SSEE-EEEE-STTEE-EEEETTTTEEEEEEE--
T ss_pred             CCccCCccccEEcCCCCeEEEEECCCCEEEEEcCCCCEEEEEeCCCCCCce-eEEEECCCEE-EEEEcCCCcEEEEEEec
Confidence            344557999999985 6799665 678899999888755432 22 24567 8988877776 666643 4577666 2 


Q ss_pred             -CC-c-----EEEEeccCCCcccCCccEEEcCC-CcEEEEeCCCCCCcccccccccccCCCceEEEEeC--CCCeeEEee
Q 026118           79 -EG-V-----TVLVSQFNGSQLRFANDVIEASD-GSLYFTVSSTKFTPAEYYLDLVSGEPHGVLLKYDP--STNQTSLVL  148 (243)
Q Consensus        79 -~g-~-----~~~~~~~~~~~~~~~~~l~~d~~-G~l~v~~~~~~~~~~~~~~~~~~~~~~g~v~~~~~--~~~~~~~~~  148 (243)
                       +. .     ..+.............|+++|+. +++|++.-                .....||.++.  ....+....
T Consensus        96 ~~~~~~~~~~~~~~l~~~~~~N~G~EGla~D~~~~~L~v~kE----------------~~P~~l~~~~~~~~~~~~~~~~  159 (248)
T PF06977_consen   96 DTTSLDRADVQKISLGFPNKGNKGFEGLAYDPKTNRLFVAKE----------------RKPKRLYEVNGFPGGFDLFVSD  159 (248)
T ss_dssp             --TT--EEEEEEEE---S---SS--EEEEEETTTTEEEEEEE----------------SSSEEEEEEESTT-SS--EEEE
T ss_pred             cccccchhhceEEecccccCCCcceEEEEEcCCCCEEEEEeC----------------CCChhhEEEccccCccceeecc
Confidence             22 1     11121222223446789999996 56777631                12246888875  212222111


Q ss_pred             ----c----cccccceEEEcCCCCEEEEEEcCCCeEEEEEeecCCCcceEEecc-----CCCCCCCceEECCCCCEEEEE
Q 026118          149 ----D----GLYFANGVALSEDERFLVVCESWKFRCVKHFLKVSGRTDREIFID-----NLPGGPDNVNLARDGSFWISI  215 (243)
Q Consensus       149 ----~----~~~~~~gi~~~~dg~~l~v~~~~~~~i~~~~~~~~~~~~~~~~~~-----~~~~~~~~i~~d~~G~lwv~~  215 (243)
                          .    ....+.+++++|....||+....+..|..+|.++...........     ..-..|.||++|++|+|||..
T Consensus       160 ~~~~~~~~~~~~d~S~l~~~p~t~~lliLS~es~~l~~~d~~G~~~~~~~L~~g~~gl~~~~~QpEGIa~d~~G~LYIvs  239 (248)
T PF06977_consen  160 DQDLDDDKLFVRDLSGLSYDPRTGHLLILSDESRLLLELDRQGRVVSSLSLDRGFHGLSKDIPQPEGIAFDPDGNLYIVS  239 (248)
T ss_dssp             -HHHH-HT--SS---EEEEETTTTEEEEEETTTTEEEEE-TT--EEEEEE-STTGGG-SS---SEEEEEE-TT--EEEEE
T ss_pred             ccccccccceeccccceEEcCCCCeEEEEECCCCeEEEECCCCCEEEEEEeCCcccCcccccCCccEEEECCCCCEEEEc
Confidence                1    123478999999888899998889999999966532222222110     011258999999999999976

Some proteins contain the IPR001258 from INTERPRO repeat.; PDB: 3QQZ_A.

>TIGR03606 non_repeat_PQQ dehydrogenase, PQQ-dependent, s-GDH family

Probab=99.05  E-value=5.3e-08  Score=82.25  Aligned_cols=168  Identities=16%  Similarity=0.216  Sum_probs=103.2

Q ss_pred             ceecccccCCcccEEEcCCCcEEEEeC-CCcEEEEccC-CceeEec------c--cCCccccceEEccCC------CEEE
Q 026118            2 IKLGEGIVNHPEDVSVDGNGVLYTATG-DGWIKRMHPN-GTWEDWH------Q--VGSQSLLGLTTTKEN------NVII   65 (243)
Q Consensus         2 ~~~~~g~~~~p~~i~~d~~g~l~~~~~-~~~i~~~~~~-g~~~~~~------~--~~~~~~~~i~~~~~g------~l~~   65 (243)
                      +.+++| +..|.+|++.+||+||++.. .|+|+++++. +......      .  ...... +|+++|+=      +.+|
T Consensus        23 ~~va~G-L~~Pw~maflPDG~llVtER~~G~I~~v~~~~~~~~~~~~l~~v~~~~ge~GLl-glal~PdF~~~~~n~~lY  100 (454)
T TIGR03606        23 KVLLSG-LNKPWALLWGPDNQLWVTERATGKILRVNPETGEVKVVFTLPEIVNDAQHNGLL-GLALHPDFMQEKGNPYVY  100 (454)
T ss_pred             EEEECC-CCCceEEEEcCCCeEEEEEecCCEEEEEeCCCCceeeeecCCceeccCCCCcee-eEEECCCccccCCCcEEE
Confidence            466776 99999999999999999996 6999999743 3222111      0  123345 88998652      3448


Q ss_pred             EEe----------CCCcEEEEe-c-C-C----cEEEEeccCCCcccCCccEEEcCCCcEEEEeCCCCCCc------cccc
Q 026118           66 VCD----------SQQGLLKVS-E-E-G----VTVLVSQFNGSQLRFANDVIEASDGSLYFTVSSTKFTP------AEYY  122 (243)
Q Consensus        66 v~~----------~~~gl~~~~-~-~-g----~~~~~~~~~~~~~~~~~~l~~d~~G~l~v~~~~~~~~~------~~~~  122 (243)
                      ++-          ....|.++. . . .    .+.+...........-..|+++|||.||++.-......      ....
T Consensus       101 vsyt~~~~~~~~~~~~~I~R~~l~~~~~~l~~~~~Il~~lP~~~~H~GgrI~FgPDG~LYVs~GD~g~~~~~n~~~~~~a  180 (454)
T TIGR03606       101 ISYTYKNGDKELPNHTKIVRYTYDKSTQTLEKPVDLLAGLPAGNDHNGGRLVFGPDGKIYYTIGEQGRNQGANFFLPNQA  180 (454)
T ss_pred             EEEeccCCCCCccCCcEEEEEEecCCCCccccceEEEecCCCCCCcCCceEEECCCCcEEEEECCCCCCCcccccCcchh
Confidence            874          123577776 2 1 1    23333222222223445789999999999865421100      0000


Q ss_pred             cc------c---cccCCCceEEEEeCCCCe-----------eEEeeccccccceEEEcCCCCEEEEEEcC
Q 026118          123 LD------L---VSGEPHGVLLKYDPSTNQ-----------TSLVLDGLYFANGVALSEDERFLVVCESW  172 (243)
Q Consensus       123 ~~------~---~~~~~~g~v~~~~~~~~~-----------~~~~~~~~~~~~gi~~~~dg~~l~v~~~~  172 (243)
                      ..      .   ......|+|+|+++++.-           .+..+.++..|.+|+|+|+|+ ||+++-+
T Consensus       181 Q~~~~~~~~~~~d~~~~~GkILRin~DGsiP~dNPf~~g~~~eIyA~G~RNp~Gla~dp~G~-Lw~~e~G  249 (454)
T TIGR03606       181 QHTPTQQELNGKDYHAYMGKVLRLNLDGSIPKDNPSINGVVSHIFTYGHRNPQGLAFTPDGT-LYASEQG  249 (454)
T ss_pred             ccccccccccccCcccCceEEEEEcCCCCCCCCCCccCCCcceEEEEeccccceeEECCCCC-EEEEecC
Confidence            00      0   112356899999998431           234456778899999999887 9998754

PQQ, or pyrroloquinoline-quinone, serves as a cofactor for a number of sugar and alcohol dehydrogenases in a limited number of bacterial species. Most characterized PQQ-dependent enzymes have multiple repeats of a sequence region described by pfam01011 (PQQ enzyme repeat), but this protein family in unusual in lacking that repeat. Below the noise cutoff are related proteins mostly from species that lack PQQ biosynthesis.

>TIGR03866 PQQ_ABC_repeats PQQ-dependent catabolism-associated beta-propeller protein

Probab=99.05  E-value=2e-07  Score=75.03  Aligned_cols=174  Identities=13%  Similarity=0.060  Sum_probs=106.9

Q ss_pred             CcccEEEcCCCcEEEEe-CCC-cEEEEcc-CCceeEecccCCccccceEEccCCCEEEEEeC-CCcEEEEe-cCC--cEE
Q 026118           11 HPEDVSVDGNGVLYTAT-GDG-WIKRMHP-NGTWEDWHQVGSQSLLGLTTTKENNVIIVCDS-QQGLLKVS-EEG--VTV   83 (243)
Q Consensus        11 ~p~~i~~d~~g~l~~~~-~~~-~i~~~~~-~g~~~~~~~~~~~~~~~i~~~~~g~l~~v~~~-~~gl~~~~-~~g--~~~   83 (243)
                      .|.+++++++|.+++.. .++ .++.++. +++..........+. .+.++++|+.+|++.. .+.+..++ .++  ...
T Consensus       116 ~~~~~~~~~dg~~l~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~-~~~~s~dg~~l~~~~~~~~~v~i~d~~~~~~~~~  194 (300)
T TIGR03866       116 EPEGMAVSPDGKIVVNTSETTNMAHFIDTKTYEIVDNVLVDQRPR-FAEFTADGKELWVSSEIGGTVSVIDVATRKVIKK  194 (300)
T ss_pred             CcceEEECCCCCEEEEEecCCCeEEEEeCCCCeEEEEEEcCCCcc-EEEECCCCCEEEEEcCCCCEEEEEEcCcceeeee
Confidence            47889999999766544 333 3556663 343322222223455 7899999997566643 34577888 555  222


Q ss_pred             EEeccCC--CcccCCccEEEcCCCcE-EEEeCCCCCCcccccccccccCCCceEEEEeCCCCeeEEeeccccccceEEEc
Q 026118           84 LVSQFNG--SQLRFANDVIEASDGSL-YFTVSSTKFTPAEYYLDLVSGEPHGVLLKYDPSTNQTSLVLDGLYFANGVALS  160 (243)
Q Consensus        84 ~~~~~~~--~~~~~~~~l~~d~~G~l-~v~~~~~~~~~~~~~~~~~~~~~~g~v~~~~~~~~~~~~~~~~~~~~~gi~~~  160 (243)
                      +.....+  .....+.+++++++|+. |++..                 ..+.+..+|.++++..........+.+++++
T Consensus       195 ~~~~~~~~~~~~~~~~~i~~s~dg~~~~~~~~-----------------~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~  257 (300)
T TIGR03866       195 ITFEIPGVHPEAVQPVGIKLTKDGKTAFVALG-----------------PANRVAVVDAKTYEVLDYLLVGQRVWQLAFT  257 (300)
T ss_pred             eeecccccccccCCccceEECCCCCEEEEEcC-----------------CCCeEEEEECCCCcEEEEEEeCCCcceEEEC
Confidence            2211111  01124557889999875 55532                 1346888898877765443323467889999


Q ss_pred             CCCCEEEEEEcCCCeEEEEEeecCCCcceEEeccCCCCCCCceEEC
Q 026118          161 EDERFLVVCESWKFRCVKHFLKVSGRTDREIFIDNLPGGPDNVNLA  206 (243)
Q Consensus       161 ~dg~~l~v~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~i~~d  206 (243)
                      |+|+.||++...++.|.++|.....  ..+.+.  ..+.|.+|++.
T Consensus       258 ~~g~~l~~~~~~~~~i~v~d~~~~~--~~~~~~--~~~~~~~~~~~  299 (300)
T TIGR03866       258 PDEKYLLTTNGVSNDVSVIDVAALK--VIKSIK--VGRLPWGVVVR  299 (300)
T ss_pred             CCCCEEEEEcCCCCeEEEEECCCCc--EEEEEE--cccccceeEeC
Confidence            9999888886667899999987632  122232  23567888764

Members of this protein family consist of seven repeats each of the YVTN family beta-propeller repeat (see TIGR02276). Members occur invariably as part of a transport operon that is associated with PQQ-dependent catabolism of alcohols such as phenylethanol.

>COG3391 Uncharacterized conserved protein [Function unknown]

Probab=99.01  E-value=2.1e-07  Score=78.10  Aligned_cols=188  Identities=16%  Similarity=0.172  Sum_probs=127.1

Q ss_pred             CCcccEEEcCCC-cEEEEe-CCCcEEEEccC-CceeEecccC-CccccceEEccCCCEEEEEeCC-CcEEEEe-cCC-cE
Q 026118           10 NHPEDVSVDGNG-VLYTAT-GDGWIKRMHPN-GTWEDWHQVG-SQSLLGLTTTKENNVIIVCDSQ-QGLLKVS-EEG-VT   82 (243)
Q Consensus        10 ~~p~~i~~d~~g-~l~~~~-~~~~i~~~~~~-g~~~~~~~~~-~~~~~~i~~~~~g~l~~v~~~~-~gl~~~~-~~g-~~   82 (243)
                      ..|..++++++| .+|+.. ....+..++.. ..+..+.... ..|. ++++++.++.+|+.+.. +.+..++ ... ..
T Consensus        31 ~~~~~v~~~~~g~~~~v~~~~~~~~~~~~~~~n~~~~~~~~g~~~p~-~i~v~~~~~~vyv~~~~~~~v~vid~~~~~~~  109 (381)
T COG3391          31 RGPGGVAVNPDGTQVYVANSGSNDVSVIDATSNTVTQSLSVGGVYPA-GVAVNPAGNKVYVTTGDSNTVSVIDTATNTVL  109 (381)
T ss_pred             CCCceeEEcCccCEEEEEeecCceeeecccccceeeeeccCCCcccc-ceeeCCCCCeEEEecCCCCeEEEEcCccccee
Confidence            478999999988 788887 33345555422 2222222222 4567 89999988855998865 5677887 333 22


Q ss_pred             EEEeccCCCcccCCccEEEcCCC-cEEEEeCCCCCCcccccccccccCCCceEEEEeCCCCeeEEeeccccccceEEEcC
Q 026118           83 VLVSQFNGSQLRFANDVIEASDG-SLYFTVSSTKFTPAEYYLDLVSGEPHGVLLKYDPSTNQTSLVLDGLYFANGVALSE  161 (243)
Q Consensus        83 ~~~~~~~~~~~~~~~~l~~d~~G-~l~v~~~~~~~~~~~~~~~~~~~~~~g~v~~~~~~~~~~~~~~~~~~~~~gi~~~~  161 (243)
                      ...  ..+   ..|.+++++++| .+|+++...               ..+.+..+|.++..+.........|.+++++|
T Consensus       110 ~~~--~vG---~~P~~~~~~~~~~~vYV~n~~~---------------~~~~vsvid~~t~~~~~~~~vG~~P~~~a~~p  169 (381)
T COG3391         110 GSI--PVG---LGPVGLAVDPDGKYVYVANAGN---------------GNNTVSVIDAATNKVTATIPVGNTPTGVAVDP  169 (381)
T ss_pred             eEe--eec---cCCceEEECCCCCEEEEEeccc---------------CCceEEEEeCCCCeEEEEEecCCCcceEEECC
Confidence            211  111   268899999987 799997641               24689999999877665543334679999999


Q ss_pred             CCCEEEEEEcCCCeEEEEEeecCCCcceE-EeccCCCCCCCceEECCCCC-EEEEEecC
Q 026118          162 DERFLVVCESWKFRCVKHFLKVSGRTDRE-IFIDNLPGGPDNVNLARDGS-FWISIIKM  218 (243)
Q Consensus       162 dg~~l~v~~~~~~~i~~~~~~~~~~~~~~-~~~~~~~~~~~~i~~d~~G~-lwv~~~~~  218 (243)
                      +|+.+|+++..++.|..++.+........ ...-.....|.+++++++|+ +|+.....
T Consensus       170 ~g~~vyv~~~~~~~v~vi~~~~~~v~~~~~~~~~~~~~~P~~i~v~~~g~~~yV~~~~~  228 (381)
T COG3391         170 DGNKVYVTNSDDNTVSVIDTSGNSVVRGSVGSLVGVGTGPAGIAVDPDGNRVYVANDGS  228 (381)
T ss_pred             CCCeEEEEecCCCeEEEEeCCCcceeccccccccccCCCCceEEECCCCCEEEEEeccC
Confidence            99999999988899999997653222100 00012345789999999998 88877654

>KOG4659 consensus Uncharacterized conserved protein (Rhs family) [Function unknown]

Probab=98.99  E-value=7.8e-08  Score=87.53  Aligned_cols=182  Identities=19%  Similarity=0.209  Sum_probs=117.0

Q ss_pred             cccEEEcC-CCcEEEEe-CCCcEEEEc-cC-----CceeEec----------c-----------cCCccccceEEccCCC
Q 026118           12 PEDVSVDG-NGVLYTAT-GDGWIKRMH-PN-----GTWEDWH----------Q-----------VGSQSLLGLTTTKENN   62 (243)
Q Consensus        12 p~~i~~d~-~g~l~~~~-~~~~i~~~~-~~-----g~~~~~~----------~-----------~~~~~~~~i~~~~~g~   62 (243)
                      --.||++| +|.||+++ ....|+|+. ..     +.+....          .           ....|- ||++|++|.
T Consensus       409 ~Yy~AvsPvdgtlyvSdp~s~qv~rv~sl~~~d~~~N~evvaG~Ge~Clp~desCGDGalA~dA~L~~Pk-GIa~dk~g~  487 (1899)
T KOG4659|consen  409 SYYIAVSPVDGTLYVSDPLSKQVWRVSSLEPQDSRNNYEVVAGDGEVCLPADESCGDGALAQDAQLIFPK-GIAFDKMGN  487 (1899)
T ss_pred             eeEEEecCcCceEEecCCCcceEEEeccCCccccccCeeEEeccCcCccccccccCcchhcccceeccCC-ceeEccCCc
Confidence            34599998 99999998 567788886 11     1122111          0           012467 999999999


Q ss_pred             EEEEEeCCCcEEEEecCC-cEEEEecc---------------CCCcccCCccEEEcC-CCcEEEEeCCCCCCcccccccc
Q 026118           63 VIIVCDSQQGLLKVSEEG-VTVLVSQF---------------NGSQLRFANDVIEAS-DGSLYFTVSSTKFTPAEYYLDL  125 (243)
Q Consensus        63 l~~v~~~~~gl~~~~~~g-~~~~~~~~---------------~~~~~~~~~~l~~d~-~G~l~v~~~~~~~~~~~~~~~~  125 (243)
                      + |+++ +..|.++|.+| +..+....               ....+..|.+++++| |+.+++-+.+            
T Consensus       488 l-YfaD-~t~IR~iD~~giIstlig~~~~~~~p~~C~~~~kl~~~~leWPT~LaV~Pmdnsl~Vld~n------------  553 (1899)
T KOG4659|consen  488 L-YFAD-GTRIRVIDTTGIISTLIGTTPDQHPPRTCAQITKLVDLQLEWPTSLAVDPMDNSLLVLDTN------------  553 (1899)
T ss_pred             E-EEec-ccEEEEeccCceEEEeccCCCCccCccccccccchhheeeecccceeecCCCCeEEEeecc------------
Confidence            9 9998 46788888777 44433210               111245788899999 8999998644            


Q ss_pred             cccCCCceEEEEeCCCCeeEEeecc---------------------ccccceEEEcCCCCEEEEEEcCCCeEEEEEeecC
Q 026118          126 VSGEPHGVLLKYDPSTNQTSLVLDG---------------------LYFANGVALSEDERFLVVCESWKFRCVKHFLKVS  184 (243)
Q Consensus       126 ~~~~~~g~v~~~~~~~~~~~~~~~~---------------------~~~~~gi~~~~dg~~l~v~~~~~~~i~~~~~~~~  184 (243)
                             -|+++++. .+++.+...                     +..+..|+++++|- |||+++...+|-+...-+ 
T Consensus       554 -------vvlrit~~-~rV~Ii~GrP~hC~~a~~t~~~skla~H~tl~~~r~Iavg~~G~-lyvaEsD~rriNrvr~~~-  623 (1899)
T KOG4659|consen  554 -------VVLRITVV-HRVRIILGRPTHCDLANATSSASKLADHRTLLIQRDIAVGTDGA-LYVAESDGRRINRVRKLS-  623 (1899)
T ss_pred             -------eEEEEccC-ccEEEEcCCccccccCCCchhhhhhhhhhhhhhhhceeecCCce-EEEEeccchhhhheEEec-
Confidence                   68888887 555533210                     12356899999998 999998765555543311 


Q ss_pred             CCcceEEec--------------c-----------CCCCCCCceEECCCCCEEEEEecC
Q 026118          185 GRTDREIFI--------------D-----------NLPGGPDNVNLARDGSFWISIIKM  218 (243)
Q Consensus       185 ~~~~~~~~~--------------~-----------~~~~~~~~i~~d~~G~lwv~~~~~  218 (243)
                      +-+...+++              +           ..-..|..+|+.++|.++|++..+
T Consensus       624 tdg~i~ilaGa~S~C~C~~~~~cdcfs~~~~~At~A~lnsp~alaVsPdg~v~IAD~gN  682 (1899)
T KOG4659|consen  624 TDGTISILAGAKSPCSCDVAACCDCFSLRDVAATQAKLNSPYALAVSPDGDVIIADSGN  682 (1899)
T ss_pred             cCceEEEecCCCCCCCcccccCCccccccchhhhccccCCcceEEECCCCcEEEecCCc
Confidence            001111111              0           011258889999999999998654

>PF02239 Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO_B 1HZU_A 1N15_B 1N50_A 1GJQ_A 1BL9_B 1NIR_B 1N90_B 1HZV_A 1AOQ_A

Probab=98.89  E-value=3.4e-07  Score=76.33  Aligned_cols=170  Identities=12%  Similarity=0.129  Sum_probs=98.0

Q ss_pred             cEEEEe-CCCcEEEEc-cCCce-eEecccCCccccceEEccCCCEEEEEeCCCcEEEEe-cCC--cEEEEeccCCCcccC
Q 026118           22 VLYTAT-GDGWIKRMH-PNGTW-EDWHQVGSQSLLGLTTTKENNVIIVCDSQQGLLKVS-EEG--VTVLVSQFNGSQLRF   95 (243)
Q Consensus        22 ~l~~~~-~~~~i~~~~-~~g~~-~~~~~~~~~~~~~i~~~~~g~l~~v~~~~~gl~~~~-~~g--~~~~~~~~~~~~~~~   95 (243)
                      .+|+.. .++.|..+| .+.++ ..+... ..+..++.+++||+.+|+++..+.|..+| .++  ...+.   .+   ..
T Consensus         7 l~~V~~~~~~~v~viD~~t~~~~~~i~~~-~~~h~~~~~s~Dgr~~yv~~rdg~vsviD~~~~~~v~~i~---~G---~~   79 (369)
T PF02239_consen    7 LFYVVERGSGSVAVIDGATNKVVARIPTG-GAPHAGLKFSPDGRYLYVANRDGTVSVIDLATGKVVATIK---VG---GN   79 (369)
T ss_dssp             EEEEEEGGGTEEEEEETTT-SEEEEEE-S-TTEEEEEE-TT-SSEEEEEETTSEEEEEETTSSSEEEEEE----S---SE
T ss_pred             EEEEEecCCCEEEEEECCCCeEEEEEcCC-CCceeEEEecCCCCEEEEEcCCCeEEEEECCcccEEEEEe---cC---CC
Confidence            344666 678899998 34443 334332 33332678899999889998766788999 555  33332   22   34


Q ss_pred             CccEEEcCCCcE-EEEeCCCCCCcccccccccccCCCceEEEEeCCCCeeEEeecc--------ccccceEEEcCCCCEE
Q 026118           96 ANDVIEASDGSL-YFTVSSTKFTPAEYYLDLVSGEPHGVLLKYDPSTNQTSLVLDG--------LYFANGVALSEDERFL  166 (243)
Q Consensus        96 ~~~l~~d~~G~l-~v~~~~~~~~~~~~~~~~~~~~~~g~v~~~~~~~~~~~~~~~~--------~~~~~gi~~~~dg~~l  166 (243)
                      +.++++++||++ ++++.                 ..+.+..+|.++.++......        .....+|..++.....
T Consensus        80 ~~~i~~s~DG~~~~v~n~-----------------~~~~v~v~D~~tle~v~~I~~~~~~~~~~~~Rv~aIv~s~~~~~f  142 (369)
T PF02239_consen   80 PRGIAVSPDGKYVYVANY-----------------EPGTVSVIDAETLEPVKTIPTGGMPVDGPESRVAAIVASPGRPEF  142 (369)
T ss_dssp             EEEEEE--TTTEEEEEEE-----------------ETTEEEEEETTT--EEEEEE--EE-TTTS---EEEEEE-SSSSEE
T ss_pred             cceEEEcCCCCEEEEEec-----------------CCCceeEeccccccceeecccccccccccCCCceeEEecCCCCEE
Confidence            678999999984 44532                 235788899887665543221        1234578778888744


Q ss_pred             EEEEcCCCeEEEEEeecCCCcceEEeccCCCCCCCceEECCCCCEEEEEec
Q 026118          167 VVCESWKFRCVKHFLKVSGRTDREIFIDNLPGGPDNVNLARDGSFWISIIK  217 (243)
Q Consensus       167 ~v~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~i~~d~~G~lwv~~~~  217 (243)
                      +++-...+.|+.+|.++......+.+  ....+|.+..+|++|+.++....
T Consensus       143 Vv~lkd~~~I~vVdy~d~~~~~~~~i--~~g~~~~D~~~dpdgry~~va~~  191 (369)
T PF02239_consen  143 VVNLKDTGEIWVVDYSDPKNLKVTTI--KVGRFPHDGGFDPDGRYFLVAAN  191 (369)
T ss_dssp             EEEETTTTEEEEEETTTSSCEEEEEE--E--TTEEEEEE-TTSSEEEEEEG
T ss_pred             EEEEccCCeEEEEEeccccccceeee--cccccccccccCcccceeeeccc
Confidence            45556678999998765421111222  23447889999999996554433

...

>PF02239 Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO_B 1HZU_A 1N15_B 1N50_A 1GJQ_A 1BL9_B 1NIR_B 1N90_B 1HZV_A 1AOQ_A

Probab=98.81  E-value=5.4e-07  Score=75.13  Aligned_cols=154  Identities=14%  Similarity=0.172  Sum_probs=93.6

Q ss_pred             cccEEEcCCCc-EEEEeCCCcEEEEc-cCCceeEecccCCccccceEEccCCCEEEEEeCC-CcEEEEe-cCC--cEEEE
Q 026118           12 PEDVSVDGNGV-LYTATGDGWIKRMH-PNGTWEDWHQVGSQSLLGLTTTKENNVIIVCDSQ-QGLLKVS-EEG--VTVLV   85 (243)
Q Consensus        12 p~~i~~d~~g~-l~~~~~~~~i~~~~-~~g~~~~~~~~~~~~~~~i~~~~~g~l~~v~~~~-~gl~~~~-~~g--~~~~~   85 (243)
                      +..+++.+||+ +|+++.++.|..+| .++++..-...+..|. ++++++||+++++++.. ..+..+| .+.  .+.+.
T Consensus        39 h~~~~~s~Dgr~~yv~~rdg~vsviD~~~~~~v~~i~~G~~~~-~i~~s~DG~~~~v~n~~~~~v~v~D~~tle~v~~I~  117 (369)
T PF02239_consen   39 HAGLKFSPDGRYLYVANRDGTVSVIDLATGKVVATIKVGGNPR-GIAVSPDGKYVYVANYEPGTVSVIDAETLEPVKTIP  117 (369)
T ss_dssp             EEEEE-TT-SSEEEEEETTSEEEEEETTSSSEEEEEE-SSEEE-EEEE--TTTEEEEEEEETTEEEEEETTT--EEEEEE
T ss_pred             eeEEEecCCCCEEEEEcCCCeEEEEECCcccEEEEEecCCCcc-eEEEcCCCCEEEEEecCCCceeEeccccccceeecc
Confidence            34577788885 99998889999999 4555544445566788 99999999987888754 4577788 554  33333


Q ss_pred             ec-cCC-CcccCCccEEEcCCCcEEEEeCCCCCCcccccccccccCCCceEEEEeCCCCeeE--EeeccccccceEEEcC
Q 026118           86 SQ-FNG-SQLRFANDVIEASDGSLYFTVSSTKFTPAEYYLDLVSGEPHGVLLKYDPSTNQTS--LVLDGLYFANGVALSE  161 (243)
Q Consensus        86 ~~-~~~-~~~~~~~~l~~d~~G~l~v~~~~~~~~~~~~~~~~~~~~~~g~v~~~~~~~~~~~--~~~~~~~~~~gi~~~~  161 (243)
                      .. ... .....+.+|..++....|+.+..                ..+.|+.+|.......  ........+.+..+++
T Consensus       118 ~~~~~~~~~~~Rv~aIv~s~~~~~fVv~lk----------------d~~~I~vVdy~d~~~~~~~~i~~g~~~~D~~~dp  181 (369)
T PF02239_consen  118 TGGMPVDGPESRVAAIVASPGRPEFVVNLK----------------DTGEIWVVDYSDPKNLKVTTIKVGRFPHDGGFDP  181 (369)
T ss_dssp             --EE-TTTS---EEEEEE-SSSSEEEEEET----------------TTTEEEEEETTTSSCEEEEEEE--TTEEEEEE-T
T ss_pred             cccccccccCCCceeEEecCCCCEEEEEEc----------------cCCeEEEEEeccccccceeeecccccccccccCc
Confidence            21 111 11223446666777776765421                3468999986543221  2233346788899999


Q ss_pred             CCCEEEEEEcCCCeEEEEEee
Q 026118          162 DERFLVVCESWKFRCVKHFLK  182 (243)
Q Consensus       162 dg~~l~v~~~~~~~i~~~~~~  182 (243)
                      ++++++++....+.|..+|..
T Consensus       182 dgry~~va~~~sn~i~viD~~  202 (369)
T PF02239_consen  182 DGRYFLVAANGSNKIAVIDTK  202 (369)
T ss_dssp             TSSEEEEEEGGGTEEEEEETT
T ss_pred             ccceeeecccccceeEEEeec
Confidence            999999987666777776654

...

>PF03022 MRJP: Major royal jelly protein; InterPro: IPR003534 The major royal jelly proteins (MRJPs) comprise 12

Probab=98.77  E-value=2e-06  Score=69.24  Aligned_cols=187  Identities=18%  Similarity=0.183  Sum_probs=103.4

Q ss_pred             ccEEEcCCCcEEEEeCC-------------CcEEEEc-cCCc-eeEecccC------CccccceEEcc-CC----CEEEE
Q 026118           13 EDVSVDGNGVLYTATGD-------------GWIKRMH-PNGT-WEDWHQVG------SQSLLGLTTTK-EN----NVIIV   66 (243)
Q Consensus        13 ~~i~~d~~g~l~~~~~~-------------~~i~~~~-~~g~-~~~~~~~~------~~~~~~i~~~~-~g----~l~~v   66 (243)
                      .++.+|++|+||+-+.+             -+|..+| .+++ ++++..+.      ...+ .+++|. ++    .++|+
T Consensus         4 ~~v~iD~~~rLWVlD~G~~~~~~~~~~~~~pKLv~~Dl~t~~li~~~~~p~~~~~~~s~ln-dl~VD~~~~~~~~~~aYI   82 (287)
T PF03022_consen    4 QRVQIDECGRLWVLDSGRPNGLQPPKQVCPPKLVAFDLKTNQLIRRYPFPPDIAPPDSFLN-DLVVDVRDGNCDDGFAYI   82 (287)
T ss_dssp             EEEEE-TTSEEEEEE-CCHSSSSTTGHTS--EEEEEETTTTCEEEEEE--CCCS-TCGGEE-EEEEECTTTTS-SEEEEE
T ss_pred             cEEEEcCCCCEEEEeCCCcCCCCCCCCCCCcEEEEEECCCCcEEEEEECChHHcccccccc-eEEEEccCCCCcceEEEE
Confidence            46889999999988621             2688998 4444 34443321      1123 577775 22    35599


Q ss_pred             EeCC-CcEEEEe-cCC--cEEEEeccCCCc--------------ccCCccEEEcC---CC-cEEEEeCCCCCCccccccc
Q 026118           67 CDSQ-QGLLKVS-EEG--VTVLVSQFNGSQ--------------LRFANDVIEAS---DG-SLYFTVSSTKFTPAEYYLD  124 (243)
Q Consensus        67 ~~~~-~gl~~~~-~~g--~~~~~~~~~~~~--------------~~~~~~l~~d~---~G-~l~v~~~~~~~~~~~~~~~  124 (243)
                      ++.. .||+.+| .++  .+.........+              ...+.+++.++   +| .||+.-..           
T Consensus        83 tD~~~~glIV~dl~~~~s~Rv~~~~~~~~p~~~~~~i~g~~~~~~dg~~gial~~~~~d~r~LYf~~ls-----------  151 (287)
T PF03022_consen   83 TDSGGPGLIVYDLATGKSWRVLHNSFSPDPDAGPFTIGGESFQWPDGIFGIALSPISPDGRWLYFHPLS-----------  151 (287)
T ss_dssp             EETTTCEEEEEETTTTEEEEEETCGCTTS-SSEEEEETTEEEEETTSEEEEEE-TTSTTS-EEEEEETT-----------
T ss_pred             eCCCcCcEEEEEccCCcEEEEecCCcceeccccceeccCceEecCCCccccccCCCCCCccEEEEEeCC-----------
Confidence            9965 5899999 776  333322111110              01233444443   33 25555221           


Q ss_pred             ccccCCCceEEEEeCCC---C----------eeEEeeccccccceEEEcCCCCEEEEEEcCCCeEEEEEeecC-CCcceE
Q 026118          125 LVSGEPHGVLLKYDPST---N----------QTSLVLDGLYFANGVALSEDERFLVVCESWKFRCVKHFLKVS-GRTDRE  190 (243)
Q Consensus       125 ~~~~~~~g~v~~~~~~~---~----------~~~~~~~~~~~~~gi~~~~dg~~l~v~~~~~~~i~~~~~~~~-~~~~~~  190 (243)
                            +..+|++..+-   .          .++.+........|+++|++|. ||++....+.|.+++.++. ...+.+
T Consensus       152 ------s~~ly~v~T~~L~~~~~~~~~~~~~~v~~lG~k~~~s~g~~~D~~G~-ly~~~~~~~aI~~w~~~~~~~~~~~~  224 (287)
T PF03022_consen  152 ------SRKLYRVPTSVLRDPSLSDAQALASQVQDLGDKGSQSDGMAIDPNGN-LYFTDVEQNAIGCWDPDGPYTPENFE  224 (287)
T ss_dssp             -------SEEEEEEHHHHCSTT--HHH-HHHT-EEEEE---SECEEEEETTTE-EEEEECCCTEEEEEETTTSB-GCCEE
T ss_pred             ------CCcEEEEEHHHhhCccccccccccccceeccccCCCCceEEECCCCc-EEEecCCCCeEEEEeCCCCcCccchh
Confidence                  22466654320   0          1111111113457899999998 9999999999999998753 122444


Q ss_pred             EeccCC--CCCCCceEECC--CCCEEEEEecC
Q 026118          191 IFIDNL--PGGPDNVNLAR--DGSFWISIIKM  218 (243)
Q Consensus       191 ~~~~~~--~~~~~~i~~d~--~G~lwv~~~~~  218 (243)
                      ++....  --+|+++.++.  +|.||+-++.-
T Consensus       225 ~l~~d~~~l~~pd~~~i~~~~~g~L~v~snrl  256 (287)
T PF03022_consen  225 ILAQDPRTLQWPDGLKIDPEGDGYLWVLSNRL  256 (287)
T ss_dssp             EEEE-CC-GSSEEEEEE-T--TS-EEEEE-S-
T ss_pred             eeEEcCceeeccceeeeccccCceEEEEECcc
Confidence            554322  24799999999  99999988664

5% of the mass, and 82-90% of the protein content [], of honeybee (Apis mellifera) royal jelly. Royal jelly is a substance secreted by the cephalic glands of nurse bees [] and it is used to trigger development of a queen bee from a bee larva. The biological function of the MRJPs is unknown, but they are believed to play a major role in nutrition due to their high essential amino acid content []. Two royal jelly proteins, MRJP3 and MRJP5, contain a tandem repeat that results from a high genetic variablility. This polymorphism may be useful for genotyping individual bees [].; PDB: 3Q6P_B 3Q6K_A 3Q6T_A 2QE8_B.

>KOG1214 consensus Nidogen and related basement membrane protein proteins [Cell wall/membrane/envelope biogenesis; Extracellular structures]

Probab=98.76  E-value=3.9e-07  Score=79.89  Aligned_cols=185  Identities=15%  Similarity=0.122  Sum_probs=120.3

Q ss_pred             CCcccEEEc-CCCcEEEEe-CCCcEEEEccCCc-eeE-ecccCCccccceEEccCCCEEEEEeCC-C--cEEEEecCCcE
Q 026118           10 NHPEDVSVD-GNGVLYTAT-GDGWIKRMHPNGT-WED-WHQVGSQSLLGLTTTKENNVIIVCDSQ-Q--GLLKVSEEGVT   82 (243)
Q Consensus        10 ~~p~~i~~d-~~g~l~~~~-~~~~i~~~~~~g~-~~~-~~~~~~~~~~~i~~~~~g~l~~v~~~~-~--gl~~~~~~g~~   82 (243)
                      .-|-+|.+| .+..+|.++ ....|.+-+.+|. .+. +......|. ||++|.-++-+|.++.. .  ++..+|-+..+
T Consensus      1025 ~IiVGidfDC~e~mvyWtDv~g~SI~rasL~G~Ep~ti~n~~L~SPE-GiAVDh~~Rn~ywtDS~lD~IevA~LdG~~rk 1103 (1289)
T KOG1214|consen 1025 SIIVGIDFDCRERMVYWTDVAGRSISRASLEGAEPETIVNSGLISPE-GIAVDHIRRNMYWTDSVLDKIEVALLDGSERK 1103 (1289)
T ss_pred             ceeeeeecccccceEEEeecCCCccccccccCCCCceeecccCCCcc-ceeeeeccceeeeeccccchhheeecCCceee
Confidence            446678888 566677776 5556766665553 222 334456788 99999766544776632 2  23444311134


Q ss_pred             EEEeccCCCcccCCccEEEcC-CCcEEEEeCCCCCCcccccccccccCCCceEEEEeCCCCeeEEe-eccccccceEEEc
Q 026118           83 VLVSQFNGSQLRFANDVIEAS-DGSLYFTVSSTKFTPAEYYLDLVSGEPHGVLLKYDPSTNQTSLV-LDGLYFANGVALS  160 (243)
Q Consensus        83 ~~~~~~~~~~~~~~~~l~~d~-~G~l~v~~~~~~~~~~~~~~~~~~~~~~g~v~~~~~~~~~~~~~-~~~~~~~~gi~~~  160 (243)
                      .+...    .+..|.+|++|+ .|+||++|.+               +....|-+.+.++...+.+ .+++..||||.|+
T Consensus      1104 vLf~t----dLVNPR~iv~D~~rgnLYwtDWn---------------RenPkIets~mDG~NrRilin~DigLPNGLtfd 1164 (1289)
T KOG1214|consen 1104 VLFYT----DLVNPRAIVVDPIRGNLYWTDWN---------------RENPKIETSSMDGENRRILINTDIGLPNGLTFD 1164 (1289)
T ss_pred             EEEee----cccCcceEEeecccCceeecccc---------------ccCCcceeeccCCccceEEeecccCCCCCceeC
Confidence            44321    245788999998 7899999865               2344677777773333333 4678899999999


Q ss_pred             CCCCEEEEEEcCCCeEEEEEeecCCCcceEEeccCCCCCCCceEECCCCCEEEEEecCC
Q 026118          161 EDERFLVVCESWKFRCVKHFLKVSGRTDREIFIDNLPGGPDNVNLARDGSFWISIIKMD  219 (243)
Q Consensus       161 ~dg~~l~v~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~i~~d~~G~lwv~~~~~~  219 (243)
                      |..+.|.|.+.+++++..+.+++.  +...++ .. .-+|.+|.-+.+. +|..+|...
T Consensus      1165 pfs~~LCWvDAGt~rleC~~p~g~--gRR~i~-~~-LqYPF~itsy~~~-fY~TDWk~n 1218 (1289)
T KOG1214|consen 1165 PFSKLLCWVDAGTKRLECTLPDGT--GRRVIQ-NN-LQYPFSITSYADH-FYHTDWKRN 1218 (1289)
T ss_pred             cccceeeEEecCCcceeEecCCCC--cchhhh-hc-ccCceeeeecccc-ceeeccccC
Confidence            999999999999999998887763  222222 12 2367778777665 888787654

>PRK04792 tolB translocation protein TolB; Provisional

Probab=98.76  E-value=7.9e-06  Score=70.17  Aligned_cols=150  Identities=11%  Similarity=0.057  Sum_probs=88.9

Q ss_pred             cEEEcCCCc-EE-EEeCC--CcEEEEcc-CCceeEecccCCccccceEEccCCCEEEEEeCCC---cEEEEe-cCC-cEE
Q 026118           14 DVSVDGNGV-LY-TATGD--GWIKRMHP-NGTWEDWHQVGSQSLLGLTTTKENNVIIVCDSQQ---GLLKVS-EEG-VTV   83 (243)
Q Consensus        14 ~i~~d~~g~-l~-~~~~~--~~i~~~~~-~g~~~~~~~~~~~~~~~i~~~~~g~l~~v~~~~~---gl~~~~-~~g-~~~   83 (243)
                      +..+.+||. |+ +...+  ..|+.++. .++.+......+... ..++++||+.++++....   .|+.++ .++ .+.
T Consensus       222 ~p~wSPDG~~La~~s~~~g~~~L~~~dl~tg~~~~lt~~~g~~~-~~~wSPDG~~La~~~~~~g~~~Iy~~dl~tg~~~~  300 (448)
T PRK04792        222 SPAWSPDGRKLAYVSFENRKAEIFVQDIYTQVREKVTSFPGING-APRFSPDGKKLALVLSKDGQPEIYVVDIATKALTR  300 (448)
T ss_pred             CceECCCCCEEEEEEecCCCcEEEEEECCCCCeEEecCCCCCcC-CeeECCCCCEEEEEEeCCCCeEEEEEECCCCCeEE
Confidence            466778884 44 44332  35888883 455444432222223 678899998544443222   388888 555 444


Q ss_pred             EEeccCCCcccCCccEEEcCCCc-EEEEeCCCCCCcccccccccccCCCceEEEEeCCCCeeEEeeccccccceEEEcCC
Q 026118           84 LVSQFNGSQLRFANDVIEASDGS-LYFTVSSTKFTPAEYYLDLVSGEPHGVLLKYDPSTNQTSLVLDGLYFANGVALSED  162 (243)
Q Consensus        84 ~~~~~~~~~~~~~~~l~~d~~G~-l~v~~~~~~~~~~~~~~~~~~~~~~g~v~~~~~~~~~~~~~~~~~~~~~gi~~~~d  162 (243)
                      +...   .  .......+++||+ ++++...               .....||+++.++++.+++........+.+++||
T Consensus       301 lt~~---~--~~~~~p~wSpDG~~I~f~s~~---------------~g~~~Iy~~dl~~g~~~~Lt~~g~~~~~~~~SpD  360 (448)
T PRK04792        301 ITRH---R--AIDTEPSWHPDGKSLIFTSER---------------GGKPQIYRVNLASGKVSRLTFEGEQNLGGSITPD  360 (448)
T ss_pred             CccC---C--CCccceEECCCCCEEEEEECC---------------CCCceEEEEECCCCCEEEEecCCCCCcCeeECCC
Confidence            3221   1  1223457889987 4444221               1224799999988887776433233445789999


Q ss_pred             CCEEEEEEcCCC--eEEEEEeecC
Q 026118          163 ERFLVVCESWKF--RCVKHFLKVS  184 (243)
Q Consensus       163 g~~l~v~~~~~~--~i~~~~~~~~  184 (243)
                      |++++++....+  .|++++++++
T Consensus       361 G~~l~~~~~~~g~~~I~~~dl~~g  384 (448)
T PRK04792        361 GRSMIMVNRTNGKFNIARQDLETG  384 (448)
T ss_pred             CCEEEEEEecCCceEEEEEECCCC
Confidence            999988765433  5777777653

>TIGR02658 TTQ_MADH_Hv methylamine dehydrogenase heavy chain

Probab=98.74  E-value=1.1e-05  Score=66.46  Aligned_cols=90  Identities=7%  Similarity=-0.027  Sum_probs=58.6

Q ss_pred             CcEEEEeCC-----CcEEEEc-cCCceeEecccCCccccceEEccCCCEEEEEeC---------CC-cEEEEe-cCC--c
Q 026118           21 GVLYTATGD-----GWIKRMH-PNGTWEDWHQVGSQSLLGLTTTKENNVIIVCDS---------QQ-GLLKVS-EEG--V   81 (243)
Q Consensus        21 g~l~~~~~~-----~~i~~~~-~~g~~~~~~~~~~~~~~~i~~~~~g~l~~v~~~---------~~-gl~~~~-~~g--~   81 (243)
                      .++|+.+..     +.|+.+| .++++..-...+..|. ++ +++||+.+|++..         .. -|..+| .+.  .
T Consensus        13 ~~v~V~d~~~~~~~~~v~ViD~~~~~v~g~i~~G~~P~-~~-~spDg~~lyva~~~~~R~~~G~~~d~V~v~D~~t~~~~   90 (352)
T TIGR02658        13 RRVYVLDPGHFAATTQVYTIDGEAGRVLGMTDGGFLPN-PV-VASDGSFFAHASTVYSRIARGKRTDYVEVIDPQTHLPI   90 (352)
T ss_pred             CEEEEECCcccccCceEEEEECCCCEEEEEEEccCCCc-ee-ECCCCCEEEEEeccccccccCCCCCEEEEEECccCcEE
Confidence            468888743     7899999 4566555444556788 76 9999998899987         33 466777 555  2


Q ss_pred             EEEEec--cCCCcccCCccEEEcCCCc-EEEEeC
Q 026118           82 TVLVSQ--FNGSQLRFANDVIEASDGS-LYFTVS  112 (243)
Q Consensus        82 ~~~~~~--~~~~~~~~~~~l~~d~~G~-l~v~~~  112 (243)
                      ..+...  +...-...+..+++++||+ +|+.+.
T Consensus        91 ~~i~~p~~p~~~~~~~~~~~~ls~dgk~l~V~n~  124 (352)
T TIGR02658        91 ADIELPEGPRFLVGTYPWMTSLTPDNKTLLFYQF  124 (352)
T ss_pred             eEEccCCCchhhccCccceEEECCCCCEEEEecC
Confidence            223211  1111134566789999996 777763

This family consists of the heavy chain of methylamine dehydrogenase light chain, a periplasmic enzyme. The enzyme contains a tryptophan tryptophylquinone (TTQ) prothetic group derived from two Trp residues in the light subunity. The enzyme forms a complex with the type I blue copper protein amicyanin and a cytochrome. Electron transfer procedes from TQQ to the copper and then to the heme group of the cytochrome.

>PF03022 MRJP: Major royal jelly protein; InterPro: IPR003534 The major royal jelly proteins (MRJPs) comprise 12

Probab=98.72  E-value=1.1e-06  Score=70.79  Aligned_cols=148  Identities=18%  Similarity=0.171  Sum_probs=93.4

Q ss_pred             ceEEccCCCEEEEEeCCC-------------cEEEEe-cCC--cEEEEecc-CCCcccCCccEEEcCC------CcEEEE
Q 026118           54 GLTTTKENNVIIVCDSQQ-------------GLLKVS-EEG--VTVLVSQF-NGSQLRFANDVIEASD------GSLYFT  110 (243)
Q Consensus        54 ~i~~~~~g~l~~v~~~~~-------------gl~~~~-~~g--~~~~~~~~-~~~~~~~~~~l~~d~~------G~l~v~  110 (243)
                      ++.+|+.|+| ||.+.+.             .|+.+| .++  .+.+.-.. ...+.+..+++++|..      +.+|++
T Consensus         5 ~v~iD~~~rL-WVlD~G~~~~~~~~~~~~~pKLv~~Dl~t~~li~~~~~p~~~~~~~s~lndl~VD~~~~~~~~~~aYIt   83 (287)
T PF03022_consen    5 RVQIDECGRL-WVLDSGRPNGLQPPKQVCPPKLVAFDLKTNQLIRRYPFPPDIAPPDSFLNDLVVDVRDGNCDDGFAYIT   83 (287)
T ss_dssp             EEEE-TTSEE-EEEE-CCHSSSSTTGHTS--EEEEEETTTTCEEEEEE--CCCS-TCGGEEEEEEECTTTTS-SEEEEEE
T ss_pred             EEEEcCCCCE-EEEeCCCcCCCCCCCCCCCcEEEEEECCCCcEEEEEECChHHcccccccceEEEEccCCCCcceEEEEe
Confidence            7889999998 9998541             489999 655  33332211 1123567788999862      469999


Q ss_pred             eCCCCCCcccccccccccCCCceEEEEeCCCCeeEEeeccc--------------------cccceEEEcC---CCCEEE
Q 026118          111 VSSTKFTPAEYYLDLVSGEPHGVLLKYDPSTNQTSLVLDGL--------------------YFANGVALSE---DERFLV  167 (243)
Q Consensus       111 ~~~~~~~~~~~~~~~~~~~~~g~v~~~~~~~~~~~~~~~~~--------------------~~~~gi~~~~---dg~~l~  167 (243)
                      |++                 ..+|..||..+++..++....                    ....||+.++   ++++||
T Consensus        84 D~~-----------------~~glIV~dl~~~~s~Rv~~~~~~~~p~~~~~~i~g~~~~~~dg~~gial~~~~~d~r~LY  146 (287)
T PF03022_consen   84 DSG-----------------GPGLIVYDLATGKSWRVLHNSFSPDPDAGPFTIGGESFQWPDGIFGIALSPISPDGRWLY  146 (287)
T ss_dssp             ETT-----------------TCEEEEEETTTTEEEEEETCGCTTS-SSEEEEETTEEEEETTSEEEEEE-TTSTTS-EEE
T ss_pred             CCC-----------------cCcEEEEEccCCcEEEEecCCcceeccccceeccCceEecCCCccccccCCCCCCccEEE
Confidence            875                 247888999888777654321                    1235677765   889999


Q ss_pred             EEEcCCCeEEEEEee---cCCCcc-------eEEeccCCCCCCCceEECCCCCEEEEEecCCc
Q 026118          168 VCESWKFRCVKHFLK---VSGRTD-------REIFIDNLPGGPDNVNLARDGSFWISIIKMDP  220 (243)
Q Consensus       168 v~~~~~~~i~~~~~~---~~~~~~-------~~~~~~~~~~~~~~i~~d~~G~lwv~~~~~~~  220 (243)
                      +....+..++++..+   ......       .+.+. ...+..+++++|++|+||++..+..+
T Consensus       147 f~~lss~~ly~v~T~~L~~~~~~~~~~~~~~v~~lG-~k~~~s~g~~~D~~G~ly~~~~~~~a  208 (287)
T PF03022_consen  147 FHPLSSRKLYRVPTSVLRDPSLSDAQALASQVQDLG-DKGSQSDGMAIDPNGNLYFTDVEQNA  208 (287)
T ss_dssp             EEETT-SEEEEEEHHHHCSTT--HHH-HHHT-EEEE-E---SECEEEEETTTEEEEEECCCTE
T ss_pred             EEeCCCCcEEEEEHHHhhCccccccccccccceecc-ccCCCCceEEECCCCcEEEecCCCCe
Confidence            998888889988764   222211       12221 12235688999999999999877653

5% of the mass, and 82-90% of the protein content [], of honeybee (Apis mellifera) royal jelly. Royal jelly is a substance secreted by the cephalic glands of nurse bees [] and it is used to trigger development of a queen bee from a bee larva. The biological function of the MRJPs is unknown, but they are believed to play a major role in nutrition due to their high essential amino acid content []. Two royal jelly proteins, MRJP3 and MRJP5, contain a tandem repeat that results from a high genetic variablility. This polymorphism may be useful for genotyping individual bees [].; PDB: 3Q6P_B 3Q6K_A 3Q6T_A 2QE8_B.

>PRK05137 tolB translocation protein TolB; Provisional

Probab=98.71  E-value=1.4e-05  Score=68.42  Aligned_cols=171  Identities=12%  Similarity=0.079  Sum_probs=99.5

Q ss_pred             cEEEcCCCc-E-EEEe--CCCcEEEEc-cCCceeEecccCCccccceEEccCCCEEEEEe-CC--CcEEEEe-cCC-cEE
Q 026118           14 DVSVDGNGV-L-YTAT--GDGWIKRMH-PNGTWEDWHQVGSQSLLGLTTTKENNVIIVCD-SQ--QGLLKVS-EEG-VTV   83 (243)
Q Consensus        14 ~i~~d~~g~-l-~~~~--~~~~i~~~~-~~g~~~~~~~~~~~~~~~i~~~~~g~l~~v~~-~~--~gl~~~~-~~g-~~~   83 (243)
                      ++++.+||. | |++.  .+..|+.++ ..++...+....+... ...++|||+.++++. ..  ..|+.++ .++ .+.
T Consensus       206 ~p~wSpDG~~lay~s~~~g~~~i~~~dl~~g~~~~l~~~~g~~~-~~~~SPDG~~la~~~~~~g~~~Iy~~d~~~~~~~~  284 (435)
T PRK05137        206 TPRFSPNRQEITYMSYANGRPRVYLLDLETGQRELVGNFPGMTF-APRFSPDGRKVVMSLSQGGNTDIYTMDLRSGTTTR  284 (435)
T ss_pred             eeEECCCCCEEEEEEecCCCCEEEEEECCCCcEEEeecCCCccc-CcEECCCCCEEEEEEecCCCceEEEEECCCCceEE
Confidence            456677774 4 4443  235688888 4555544432223333 678999998644433 22  3488888 555 444


Q ss_pred             EEeccCCCcccCCccEEEcCCCc-EEEEeCCCCCCcccccccccccCCCceEEEEeCCCCeeEEeeccccccceEEEcCC
Q 026118           84 LVSQFNGSQLRFANDVIEASDGS-LYFTVSSTKFTPAEYYLDLVSGEPHGVLLKYDPSTNQTSLVLDGLYFANGVALSED  162 (243)
Q Consensus        84 ~~~~~~~~~~~~~~~l~~d~~G~-l~v~~~~~~~~~~~~~~~~~~~~~~g~v~~~~~~~~~~~~~~~~~~~~~gi~~~~d  162 (243)
                      +....     .......++|||+ ++++...               .....||.++.++++.+++.........+.++||
T Consensus       285 Lt~~~-----~~~~~~~~spDG~~i~f~s~~---------------~g~~~Iy~~d~~g~~~~~lt~~~~~~~~~~~Spd  344 (435)
T PRK05137        285 LTDSP-----AIDTSPSYSPDGSQIVFESDR---------------SGSPQLYVMNADGSNPRRISFGGGRYSTPVWSPR  344 (435)
T ss_pred             ccCCC-----CccCceeEcCCCCEEEEEECC---------------CCCCeEEEEECCCCCeEEeecCCCcccCeEECCC
Confidence            33211     1123457889987 5554321               1224799999988877777544333456789999


Q ss_pred             CCEEEEEEcCC--CeEEEEEeecCCCcceEEeccCCCCCCCceEECCCCC
Q 026118          163 ERFLVVCESWK--FRCVKHFLKVSGRTDREIFIDNLPGGPDNVNLARDGS  210 (243)
Q Consensus       163 g~~l~v~~~~~--~~i~~~~~~~~~~~~~~~~~~~~~~~~~~i~~d~~G~  210 (243)
                      |+.|+++....  ..|+.+++++..   .+.+..  ........++++|+
T Consensus       345 G~~ia~~~~~~~~~~i~~~d~~~~~---~~~lt~--~~~~~~p~~spDG~  389 (435)
T PRK05137        345 GDLIAFTKQGGGQFSIGVMKPDGSG---ERILTS--GFLVEGPTWAPNGR  389 (435)
T ss_pred             CCEEEEEEcCCCceEEEEEECCCCc---eEeccC--CCCCCCCeECCCCC
Confidence            99888775433  467777765432   222221  11234567777777

>KOG0291 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]

Probab=98.71  E-value=7.1e-06  Score=71.47  Aligned_cols=155  Identities=15%  Similarity=0.147  Sum_probs=105.8

Q ss_pred             cccCCcccEEEcCCCcEEEEe-CCCcEEEEccCC--ceeEecccCCccccceEEccCCCEEEEEeCCCcEEEEe-cCC--
Q 026118            7 GIVNHPEDVSVDGNGVLYTAT-GDGWIKRMHPNG--TWEDWHQVGSQSLLGLTTTKENNVIIVCDSQQGLLKVS-EEG--   80 (243)
Q Consensus         7 g~~~~p~~i~~d~~g~l~~~~-~~~~i~~~~~~g--~~~~~~~~~~~~~~~i~~~~~g~l~~v~~~~~gl~~~~-~~g--   80 (243)
                      |....-.++++.|||.+.++. .+++|..++...  .+.+|........ ++.+...|+.++.+..++-|..+| ...  
T Consensus       348 gH~~~i~~l~YSpDgq~iaTG~eDgKVKvWn~~SgfC~vTFteHts~Vt-~v~f~~~g~~llssSLDGtVRAwDlkRYrN  426 (893)
T KOG0291|consen  348 GHSDRITSLAYSPDGQLIATGAEDGKVKVWNTQSGFCFVTFTEHTSGVT-AVQFTARGNVLLSSSLDGTVRAWDLKRYRN  426 (893)
T ss_pred             ccccceeeEEECCCCcEEEeccCCCcEEEEeccCceEEEEeccCCCceE-EEEEEecCCEEEEeecCCeEEeeeecccce
Confidence            445567788999999766554 889999998433  4555544333344 888999999855555555566777 332  


Q ss_pred             cEEEEeccCCCcccCCccEEEcCCCcEEEEeCCCCCCcccccccccccCCCceEEEEeCCCCeeEEeecccccc-ceEEE
Q 026118           81 VTVLVSQFNGSQLRFANDVIEASDGSLYFTVSSTKFTPAEYYLDLVSGEPHGVLLKYDPSTNQTSLVLDGLYFA-NGVAL  159 (243)
Q Consensus        81 ~~~~~~~~~~~~~~~~~~l~~d~~G~l~v~~~~~~~~~~~~~~~~~~~~~~g~v~~~~~~~~~~~~~~~~~~~~-~gi~~  159 (243)
                      ++.+..    +......++++||.|.+.++....                .-.|+..+.++|++.-+..+...| .++.|
T Consensus       427 fRTft~----P~p~QfscvavD~sGelV~AG~~d----------------~F~IfvWS~qTGqllDiLsGHEgPVs~l~f  486 (893)
T KOG0291|consen  427 FRTFTS----PEPIQFSCVAVDPSGELVCAGAQD----------------SFEIFVWSVQTGQLLDILSGHEGPVSGLSF  486 (893)
T ss_pred             eeeecC----CCceeeeEEEEcCCCCEEEeeccc----------------eEEEEEEEeecCeeeehhcCCCCcceeeEE
Confidence            444322    122345689999999988874321                225888888889887766555444 67999


Q ss_pred             cCCCCEEEEEEcCCCeEEEEEeec
Q 026118          160 SEDERFLVVCESWKFRCVKHFLKV  183 (243)
Q Consensus       160 ~~dg~~l~v~~~~~~~i~~~~~~~  183 (243)
                      +++|. +.++.+++..|..++.-.
T Consensus       487 ~~~~~-~LaS~SWDkTVRiW~if~  509 (893)
T KOG0291|consen  487 SPDGS-LLASGSWDKTVRIWDIFS  509 (893)
T ss_pred             ccccC-eEEeccccceEEEEEeec
Confidence            99999 666667889999988754

>PRK04922 tolB translocation protein TolB; Provisional

Probab=98.69  E-value=1.4e-05  Score=68.49  Aligned_cols=177  Identities=12%  Similarity=0.114  Sum_probs=99.8

Q ss_pred             cEEEcCCCc-EEEEe-C--CCcEEEEcc-CCceeEecccCCccccceEEccCCCEEEEE-eCC--CcEEEEe-cCC-cEE
Q 026118           14 DVSVDGNGV-LYTAT-G--DGWIKRMHP-NGTWEDWHQVGSQSLLGLTTTKENNVIIVC-DSQ--QGLLKVS-EEG-VTV   83 (243)
Q Consensus        14 ~i~~d~~g~-l~~~~-~--~~~i~~~~~-~g~~~~~~~~~~~~~~~i~~~~~g~l~~v~-~~~--~gl~~~~-~~g-~~~   83 (243)
                      ++++.+||. |++.. .  ...|++++. .++...+....+... .+.+++||+.++++ ...  ..|+.++ .++ .+.
T Consensus       208 ~p~wSpDg~~la~~s~~~~~~~l~~~dl~~g~~~~l~~~~g~~~-~~~~SpDG~~l~~~~s~~g~~~Iy~~d~~~g~~~~  286 (433)
T PRK04922        208 SPAWSPDGKKLAYVSFERGRSAIYVQDLATGQRELVASFRGING-APSFSPDGRRLALTLSRDGNPEIYVMDLGSRQLTR  286 (433)
T ss_pred             cccCCCCCCEEEEEecCCCCcEEEEEECCCCCEEEeccCCCCcc-CceECCCCCEEEEEEeCCCCceEEEEECCCCCeEE
Confidence            345667774 44443 2  235888883 455444332222223 67899999854443 322  2488888 566 444


Q ss_pred             EEeccCCCcccCCccEEEcCCCc-EEEEeCCCCCCcccccccccccCCCceEEEEeCCCCeeEEeeccccccceEEEcCC
Q 026118           84 LVSQFNGSQLRFANDVIEASDGS-LYFTVSSTKFTPAEYYLDLVSGEPHGVLLKYDPSTNQTSLVLDGLYFANGVALSED  162 (243)
Q Consensus        84 ~~~~~~~~~~~~~~~l~~d~~G~-l~v~~~~~~~~~~~~~~~~~~~~~~g~v~~~~~~~~~~~~~~~~~~~~~gi~~~~d  162 (243)
                      +....     .....+.+++||+ ++++...               .....||.++.++++.+++.........++++||
T Consensus       287 lt~~~-----~~~~~~~~spDG~~l~f~sd~---------------~g~~~iy~~dl~~g~~~~lt~~g~~~~~~~~SpD  346 (433)
T PRK04922        287 LTNHF-----GIDTEPTWAPDGKSIYFTSDR---------------GGRPQIYRVAASGGSAERLTFQGNYNARASVSPD  346 (433)
T ss_pred             CccCC-----CCccceEECCCCCEEEEEECC---------------CCCceEEEEECCCCCeEEeecCCCCccCEEECCC
Confidence            33211     1123458899997 4444211               1123699999887877766533333446899999


Q ss_pred             CCEEEEEEcCC--CeEEEEEeecCCCcceEEeccCCCCCCCceEECCCCC-EEEEEe
Q 026118          163 ERFLVVCESWK--FRCVKHFLKVSGRTDREIFIDNLPGGPDNVNLARDGS-FWISII  216 (243)
Q Consensus       163 g~~l~v~~~~~--~~i~~~~~~~~~~~~~~~~~~~~~~~~~~i~~d~~G~-lwv~~~  216 (243)
                      |++++++...+  ..|+.++..++.   .+.+...  .......++++|+ |++...
T Consensus       347 G~~Ia~~~~~~~~~~I~v~d~~~g~---~~~Lt~~--~~~~~p~~spdG~~i~~~s~  398 (433)
T PRK04922        347 GKKIAMVHGSGGQYRIAVMDLSTGS---VRTLTPG--SLDESPSFAPNGSMVLYATR  398 (433)
T ss_pred             CCEEEEEECCCCceeEEEEECCCCC---eEECCCC--CCCCCceECCCCCEEEEEEe
Confidence            99888875432  358888876532   2233211  1223457778887 344333

>PRK02889 tolB translocation protein TolB; Provisional

Probab=98.69  E-value=2e-05  Score=67.35  Aligned_cols=180  Identities=12%  Similarity=0.130  Sum_probs=100.7

Q ss_pred             cEEEcCCCc-EEEEe-C--CCcEEEEc-cCCceeEecccCCccccceEEccCCCEEEEEeCCC---cEEEEe-cCC-cEE
Q 026118           14 DVSVDGNGV-LYTAT-G--DGWIKRMH-PNGTWEDWHQVGSQSLLGLTTTKENNVIIVCDSQQ---GLLKVS-EEG-VTV   83 (243)
Q Consensus        14 ~i~~d~~g~-l~~~~-~--~~~i~~~~-~~g~~~~~~~~~~~~~~~i~~~~~g~l~~v~~~~~---gl~~~~-~~g-~~~   83 (243)
                      ++++.+||+ |+++. .  ...|+.++ ..++...+....+... ..+++|||+.++++....   .|+.++ ..+ .+.
T Consensus       200 ~p~wSPDG~~la~~s~~~~~~~I~~~dl~~g~~~~l~~~~g~~~-~~~~SPDG~~la~~~~~~g~~~Iy~~d~~~~~~~~  278 (427)
T PRK02889        200 SPAWSPDGTKLAYVSFESKKPVVYVHDLATGRRRVVANFKGSNS-APAWSPDGRTLAVALSRDGNSQIYTVNADGSGLRR  278 (427)
T ss_pred             cceEcCCCCEEEEEEccCCCcEEEEEECCCCCEEEeecCCCCcc-ceEECCCCCEEEEEEccCCCceEEEEECCCCCcEE
Confidence            456778884 44443 2  23588888 4555544432223333 678999998644433222   488888 444 443


Q ss_pred             EEeccCCCcccCCccEEEcCCCc-EEEEeCCCCCCcccccccccccCCCceEEEEeCCCCeeEEeeccccccceEEEcCC
Q 026118           84 LVSQFNGSQLRFANDVIEASDGS-LYFTVSSTKFTPAEYYLDLVSGEPHGVLLKYDPSTNQTSLVLDGLYFANGVALSED  162 (243)
Q Consensus        84 ~~~~~~~~~~~~~~~l~~d~~G~-l~v~~~~~~~~~~~~~~~~~~~~~~g~v~~~~~~~~~~~~~~~~~~~~~gi~~~~d  162 (243)
                      +... .    .......++|||+ ++++...               .....||.++.++++.+++...........++||
T Consensus       279 lt~~-~----~~~~~~~wSpDG~~l~f~s~~---------------~g~~~Iy~~~~~~g~~~~lt~~g~~~~~~~~SpD  338 (427)
T PRK02889        279 LTQS-S----GIDTEPFFSPDGRSIYFTSDR---------------GGAPQIYRMPASGGAAQRVTFTGSYNTSPRISPD  338 (427)
T ss_pred             CCCC-C----CCCcCeEEcCCCCEEEEEecC---------------CCCcEEEEEECCCCceEEEecCCCCcCceEECCC
Confidence            3221 1    1123457899997 4444221               1223699999887776665432223345789999


Q ss_pred             CCEEEEEEcCC--CeEEEEEeecCCCcceEEeccCCCCCCCceEECCCCC-EEEEEecCC
Q 026118          163 ERFLVVCESWK--FRCVKHFLKVSGRTDREIFIDNLPGGPDNVNLARDGS-FWISIIKMD  219 (243)
Q Consensus       163 g~~l~v~~~~~--~~i~~~~~~~~~~~~~~~~~~~~~~~~~~i~~d~~G~-lwv~~~~~~  219 (243)
                      |++++++....  ..|+.++..++.   .+.+...  .......++++|+ |+.+...++
T Consensus       339 G~~Ia~~s~~~g~~~I~v~d~~~g~---~~~lt~~--~~~~~p~~spdg~~l~~~~~~~g  393 (427)
T PRK02889        339 GKLLAYISRVGGAFKLYVQDLATGQ---VTALTDT--TRDESPSFAPNGRYILYATQQGG  393 (427)
T ss_pred             CCEEEEEEccCCcEEEEEEECCCCC---eEEccCC--CCccCceECCCCCEEEEEEecCC
Confidence            99887765433  368888876532   2222211  1224467788887 444444443

>PRK03629 tolB translocation protein TolB; Provisional

Probab=98.67  E-value=2.6e-05  Score=66.71  Aligned_cols=180  Identities=14%  Similarity=0.116  Sum_probs=101.9

Q ss_pred             cEEEcCCCc-E-EEEe--CCCcEEEEc-cCCceeEecccCCccccceEEccCCCEEEEEeCCC---cEEEEe-cCC-cEE
Q 026118           14 DVSVDGNGV-L-YTAT--GDGWIKRMH-PNGTWEDWHQVGSQSLLGLTTTKENNVIIVCDSQQ---GLLKVS-EEG-VTV   83 (243)
Q Consensus        14 ~i~~d~~g~-l-~~~~--~~~~i~~~~-~~g~~~~~~~~~~~~~~~i~~~~~g~l~~v~~~~~---gl~~~~-~~g-~~~   83 (243)
                      ++++.+||. | |++.  ....|+.++ ..|+........+... .+.++|||+.|+++....   .|+.++ .++ .+.
T Consensus       203 ~p~wSPDG~~la~~s~~~g~~~i~i~dl~~G~~~~l~~~~~~~~-~~~~SPDG~~La~~~~~~g~~~I~~~d~~tg~~~~  281 (429)
T PRK03629        203 SPAWSPDGSKLAYVTFESGRSALVIQTLANGAVRQVASFPRHNG-APAFSPDGSKLAFALSKTGSLNLYVMDLASGQIRQ  281 (429)
T ss_pred             eeEEcCCCCEEEEEEecCCCcEEEEEECCCCCeEEccCCCCCcC-CeEECCCCCEEEEEEcCCCCcEEEEEECCCCCEEE
Confidence            567778874 3 3333  234577777 3455444332222223 678999998645443222   488888 666 544


Q ss_pred             EEeccCCCcccCCccEEEcCCCc-EEEEeCCCCCCcccccccccccCCCceEEEEeCCCCeeEEeeccccccceEEEcCC
Q 026118           84 LVSQFNGSQLRFANDVIEASDGS-LYFTVSSTKFTPAEYYLDLVSGEPHGVLLKYDPSTNQTSLVLDGLYFANGVALSED  162 (243)
Q Consensus        84 ~~~~~~~~~~~~~~~l~~d~~G~-l~v~~~~~~~~~~~~~~~~~~~~~~g~v~~~~~~~~~~~~~~~~~~~~~gi~~~~d  162 (243)
                      +...   .  .......++|||+ |+++...               .....||.++.++++.+++...........++||
T Consensus       282 lt~~---~--~~~~~~~wSPDG~~I~f~s~~---------------~g~~~Iy~~d~~~g~~~~lt~~~~~~~~~~~SpD  341 (429)
T PRK03629        282 VTDG---R--SNNTEPTWFPDSQNLAYTSDQ---------------AGRPQVYKVNINGGAPQRITWEGSQNQDADVSSD  341 (429)
T ss_pred             ccCC---C--CCcCceEECCCCCEEEEEeCC---------------CCCceEEEEECCCCCeEEeecCCCCccCEEECCC
Confidence            4321   1  1234568899997 4444211               1123799999998877776543334456889999


Q ss_pred             CCEEEEEEcCC--CeEEEEEeecCCCcceEEeccCCCCCCCceEECCCCC-EEEEEecCC
Q 026118          163 ERFLVVCESWK--FRCVKHFLKVSGRTDREIFIDNLPGGPDNVNLARDGS-FWISIIKMD  219 (243)
Q Consensus       163 g~~l~v~~~~~--~~i~~~~~~~~~~~~~~~~~~~~~~~~~~i~~d~~G~-lwv~~~~~~  219 (243)
                      |++++++...+  ..|+.++++++.   .+.+...  ..-....+++||+ |+.+...++
T Consensus       342 G~~Ia~~~~~~g~~~I~~~dl~~g~---~~~Lt~~--~~~~~p~~SpDG~~i~~~s~~~~  396 (429)
T PRK03629        342 GKFMVMVSSNGGQQHIAKQDLATGG---VQVLTDT--FLDETPSIAPNGTMVIYSSSQGM  396 (429)
T ss_pred             CCEEEEEEccCCCceEEEEECCCCC---eEEeCCC--CCCCCceECCCCCEEEEEEcCCC
Confidence            99887765432  457788876542   2222211  1122356778887 444444433

>COG3292 Predicted periplasmic ligand-binding sensor domain [Signal transduction mechanisms]

Probab=98.64  E-value=4.6e-07  Score=76.62  Aligned_cols=143  Identities=17%  Similarity=0.116  Sum_probs=91.7

Q ss_pred             ccEEEcCCCcEEEEeCCCcEEEEc-cCCceeEecccCC-ccccceEEccCCCEEEEEeCCCcEEEEecCCcEEEEeccCC
Q 026118           13 EDVSVDGNGVLYTATGDGWIKRMH-PNGTWEDWHQVGS-QSLLGLTTTKENNVIIVCDSQQGLLKVSEEGVTVLVSQFNG   90 (243)
Q Consensus        13 ~~i~~d~~g~l~~~~~~~~i~~~~-~~g~~~~~~~~~~-~~~~~i~~~~~g~l~~v~~~~~gl~~~~~~g~~~~~~~~~~   90 (243)
                      ..+++|.+|++|+++.+ ++++++ ..++........- .+...++.|..|++ ||++ .+|++..++.|.+ +......
T Consensus       168 ~aLv~D~~g~lWvgT~d-GL~~fd~~~gkalql~s~~~dk~I~al~~d~qg~L-WVGT-dqGv~~~e~~G~~-~sn~~~~  243 (671)
T COG3292         168 VALVFDANGRLWVGTPD-GLSYFDAGRGKALQLASPPLDKAINALIADVQGRL-WVGT-DQGVYLQEAEGWR-ASNWGPM  243 (671)
T ss_pred             eeeeeeccCcEEEecCC-cceEEccccceEEEcCCCcchhhHHHHHHHhcCcE-EEEe-ccceEEEchhhcc-ccccCCC
Confidence            45888999999999875 489998 4555544333211 23326788899999 9998 5799998855511 1111222


Q ss_pred             CcccCCccEEEcCCCcEEEEeCCCCCCcccccccccccCCCceEEEEeCCCCeeEEee----ccccccceEEEcCCCCEE
Q 026118           91 SQLRFANDVIEASDGSLYFTVSSTKFTPAEYYLDLVSGEPHGVLLKYDPSTNQTSLVL----DGLYFANGVALSEDERFL  166 (243)
Q Consensus        91 ~~~~~~~~l~~d~~G~l~v~~~~~~~~~~~~~~~~~~~~~~g~v~~~~~~~~~~~~~~----~~~~~~~gi~~~~dg~~l  166 (243)
                      .+...+..+..|.+|++|+++..                   +++++....+.+....    ......+++..|.+|. |
T Consensus       244 lp~~~I~ll~qD~qG~lWiGTen-------------------Gl~r~~l~rq~Lq~~~~~~~l~~S~vnsL~~D~dGs-L  303 (671)
T COG3292         244 LPSGNILLLVQDAQGELWIGTEN-------------------GLWRTRLPRQGLQIPLSKMHLGVSTVNSLWLDTDGS-L  303 (671)
T ss_pred             CcchheeeeecccCCCEEEeecc-------------------cceeEecCCCCccccccccCCccccccceeeccCCC-E
Confidence            23334556678889999999643                   5666655544433221    2234457889999999 9


Q ss_pred             EEEEcCCCeEEEEEe
Q 026118          167 VVCESWKFRCVKHFL  181 (243)
Q Consensus       167 ~v~~~~~~~i~~~~~  181 (243)
                      |+.+.  +++++|..
T Consensus       304 Wv~t~--~giv~~~~  316 (671)
T COG3292         304 WVGTY--GGIVRYLT  316 (671)
T ss_pred             eeecc--CceEEEec
Confidence            99864  45665543

>COG3292 Predicted periplasmic ligand-binding sensor domain [Signal transduction mechanisms]

Probab=98.63  E-value=2e-07  Score=78.67  Aligned_cols=174  Identities=13%  Similarity=0.027  Sum_probs=100.7

Q ss_pred             cCCCcEEEEeCCCcEEEEccCC--cee--EecccCCccccceEEccCCCEEEEEeCCCcEEEEe-cCC-cEEEEeccCCC
Q 026118           18 DGNGVLYTATGDGWIKRMHPNG--TWE--DWHQVGSQSLLGLTTTKENNVIIVCDSQQGLLKVS-EEG-VTVLVSQFNGS   91 (243)
Q Consensus        18 d~~g~l~~~~~~~~i~~~~~~g--~~~--~~~~~~~~~~~~i~~~~~g~l~~v~~~~~gl~~~~-~~g-~~~~~~~~~~~   91 (243)
                      |+...+|..-.+.++.+.+.-+  .++  ++... ..+...+.+|.+|++ ||++ .+|+++|+ ..+ ..++...... 
T Consensus       130 ddaqllw~~~~~~gV~~~d~lg~~~v~~~r~ll~-d~~V~aLv~D~~g~l-WvgT-~dGL~~fd~~~gkalql~s~~~d-  205 (671)
T COG3292         130 DDAQLLWLHASVIGVDSADALGREAVKDVRPLLK-DTPVVALVFDANGRL-WVGT-PDGLSYFDAGRGKALQLASPPLD-  205 (671)
T ss_pred             chhhhhhhccccCCccccccchhhhccCcccccc-CccceeeeeeccCcE-EEec-CCcceEEccccceEEEcCCCcch-
Confidence            3444566555555666555211  111  11111 234437899999999 9998 57999999 455 3333221111 


Q ss_pred             cccCCccEEEcCCCcEEEEeCCCCCCcccccccccccCCCceEEEEeCCCCeeEEeecc--ccccceEEEcCCCCEEEEE
Q 026118           92 QLRFANDVIEASDGSLYFTVSSTKFTPAEYYLDLVSGEPHGVLLKYDPSTNQTSLVLDG--LYFANGVALSEDERFLVVC  169 (243)
Q Consensus        92 ~~~~~~~l~~d~~G~l~v~~~~~~~~~~~~~~~~~~~~~~g~v~~~~~~~~~~~~~~~~--~~~~~gi~~~~dg~~l~v~  169 (243)
                        ..++.+..|-.|++||++..                   +++++++.+.++......  .....-+.-|.+|. +|++
T Consensus       206 --k~I~al~~d~qg~LWVGTdq-------------------Gv~~~e~~G~~~sn~~~~lp~~~I~ll~qD~qG~-lWiG  263 (671)
T COG3292         206 --KAINALIADVQGRLWVGTDQ-------------------GVYLQEAEGWRASNWGPMLPSGNILLLVQDAQGE-LWIG  263 (671)
T ss_pred             --hhHHHHHHHhcCcEEEEecc-------------------ceEEEchhhccccccCCCCcchheeeeecccCCC-EEEe
Confidence              23556677889999999654                   799999885332221111  12233456677887 9999


Q ss_pred             EcCCCeEEEEEeecCCCcceEEeccCCCCCCCceEECCCCCEEEEEecCC
Q 026118          170 ESWKFRCVKHFLKVSGRTDREIFIDNLPGGPDNVNLARDGSFWISIIKMD  219 (243)
Q Consensus       170 ~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~i~~d~~G~lwv~~~~~~  219 (243)
                      ..  +.++++......+..+..--...-....++..|.+|+||+++..+.
T Consensus       264 Te--nGl~r~~l~rq~Lq~~~~~~~l~~S~vnsL~~D~dGsLWv~t~~gi  311 (671)
T COG3292         264 TE--NGLWRTRLPRQGLQIPLSKMHLGVSTVNSLWLDTDGSLWVGTYGGI  311 (671)
T ss_pred             ec--ccceeEecCCCCccccccccCCccccccceeeccCCCEeeeccCce
Confidence            65  4566665543322211110000111346789999999999998865

>PRK00178 tolB translocation protein TolB; Provisional

Probab=98.59  E-value=6.3e-05  Score=64.36  Aligned_cols=179  Identities=14%  Similarity=0.151  Sum_probs=100.6

Q ss_pred             ccEEEcCCCc-E-EEEeCC--CcEEEEc-cCCceeEecccCCccccceEEccCCCEEEEEeCCC---cEEEEe-cCC-cE
Q 026118           13 EDVSVDGNGV-L-YTATGD--GWIKRMH-PNGTWEDWHQVGSQSLLGLTTTKENNVIIVCDSQQ---GLLKVS-EEG-VT   82 (243)
Q Consensus        13 ~~i~~d~~g~-l-~~~~~~--~~i~~~~-~~g~~~~~~~~~~~~~~~i~~~~~g~l~~v~~~~~---gl~~~~-~~g-~~   82 (243)
                      .+..+.+||. | |++..+  ..|++++ ..++.+.+....+... ...++|||+.+++.....   .|+.++ .++ .+
T Consensus       202 ~~p~wSpDG~~la~~s~~~~~~~l~~~~l~~g~~~~l~~~~g~~~-~~~~SpDG~~la~~~~~~g~~~Iy~~d~~~~~~~  280 (430)
T PRK00178        202 LSPRWSPDGKRIAYVSFEQKRPRIFVQNLDTGRREQITNFEGLNG-APAWSPDGSKLAFVLSKDGNPEIYVMDLASRQLS  280 (430)
T ss_pred             eeeeECCCCCEEEEEEcCCCCCEEEEEECCCCCEEEccCCCCCcC-CeEECCCCCEEEEEEccCCCceEEEEECCCCCeE
Confidence            3456777774 4 444332  3588887 3455554433222223 678899998644433222   488888 555 44


Q ss_pred             EEEeccCCCcccCCccEEEcCCCc-EEEEeCCCCCCcccccccccccCCCceEEEEeCCCCeeEEeeccccccceEEEcC
Q 026118           83 VLVSQFNGSQLRFANDVIEASDGS-LYFTVSSTKFTPAEYYLDLVSGEPHGVLLKYDPSTNQTSLVLDGLYFANGVALSE  161 (243)
Q Consensus        83 ~~~~~~~~~~~~~~~~l~~d~~G~-l~v~~~~~~~~~~~~~~~~~~~~~~g~v~~~~~~~~~~~~~~~~~~~~~gi~~~~  161 (243)
                      .+... .    .......+++||+ ++++...               .....||+++.++++.+++...........++|
T Consensus       281 ~lt~~-~----~~~~~~~~spDg~~i~f~s~~---------------~g~~~iy~~d~~~g~~~~lt~~~~~~~~~~~Sp  340 (430)
T PRK00178        281 RVTNH-P----AIDTEPFWGKDGRTLYFTSDR---------------GGKPQIYKVNVNGGRAERVTFVGNYNARPRLSA  340 (430)
T ss_pred             EcccC-C----CCcCCeEECCCCCEEEEEECC---------------CCCceEEEEECCCCCEEEeecCCCCccceEECC
Confidence            43321 1    1122457889986 5555321               123479999998888776653323334578999


Q ss_pred             CCCEEEEEEcCC--CeEEEEEeecCCCcceEEeccCCCCCCCceEECCCCC-EEEEEec
Q 026118          162 DERFLVVCESWK--FRCVKHFLKVSGRTDREIFIDNLPGGPDNVNLARDGS-FWISIIK  217 (243)
Q Consensus       162 dg~~l~v~~~~~--~~i~~~~~~~~~~~~~~~~~~~~~~~~~~i~~d~~G~-lwv~~~~  217 (243)
                      ||++++++....  ..|+.+++.++.   .+.+...  .......++++|+ |+.+...
T Consensus       341 dg~~i~~~~~~~~~~~l~~~dl~tg~---~~~lt~~--~~~~~p~~spdg~~i~~~~~~  394 (430)
T PRK00178        341 DGKTLVMVHRQDGNFHVAAQDLQRGS---VRILTDT--SLDESPSVAPNGTMLIYATRQ  394 (430)
T ss_pred             CCCEEEEEEccCCceEEEEEECCCCC---EEEccCC--CCCCCceECCCCCEEEEEEec
Confidence            999998876433  357788876532   2222211  1222346777777 4444433

>cd00200 WD40 WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and botto

Probab=98.56  E-value=7.1e-05  Score=58.79  Aligned_cols=178  Identities=17%  Similarity=0.103  Sum_probs=106.2

Q ss_pred             CcccEEEcCCCcEEEEe-CCCcEEEEccC-Ccee-EecccCCccccceEEccCCCEEEEEeCCCcEEEEe-cCC--cEEE
Q 026118           11 HPEDVSVDGNGVLYTAT-GDGWIKRMHPN-GTWE-DWHQVGSQSLLGLTTTKENNVIIVCDSQQGLLKVS-EEG--VTVL   84 (243)
Q Consensus        11 ~p~~i~~d~~g~l~~~~-~~~~i~~~~~~-g~~~-~~~~~~~~~~~~i~~~~~g~l~~v~~~~~gl~~~~-~~g--~~~~   84 (243)
                      ...++.+.+++.++++. .++.|..++.. ++.. .+........ .+.+++++.+++++...+.+..++ ..+  ...+
T Consensus        95 ~i~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~i~-~~~~~~~~~~l~~~~~~~~i~i~d~~~~~~~~~~  173 (289)
T cd00200          95 YVSSVAFSPDGRILSSSSRDKTIKVWDVETGKCLTTLRGHTDWVN-SVAFSPDGTFVASSSQDGTIKLWDLRTGKCVATL  173 (289)
T ss_pred             cEEEEEEcCCCCEEEEecCCCeEEEEECCCcEEEEEeccCCCcEE-EEEEcCcCCEEEEEcCCCcEEEEEccccccceeE
Confidence            45667888877766665 48889888843 4332 2221122234 788999888844443355677787 444  2222


Q ss_pred             EeccCCCcccCCccEEEcCCCc-EEEEeCCCCCCcccccccccccCCCceEEEEeCCCCeeEEee-ccccccceEEEcCC
Q 026118           85 VSQFNGSQLRFANDVIEASDGS-LYFTVSSTKFTPAEYYLDLVSGEPHGVLLKYDPSTNQTSLVL-DGLYFANGVALSED  162 (243)
Q Consensus        85 ~~~~~~~~~~~~~~l~~d~~G~-l~v~~~~~~~~~~~~~~~~~~~~~~g~v~~~~~~~~~~~~~~-~~~~~~~gi~~~~d  162 (243)
                      ..     ....+.++.+.++++ ++++.                  ..+.|..+|..+++..... ........++++++
T Consensus       174 ~~-----~~~~i~~~~~~~~~~~l~~~~------------------~~~~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~  230 (289)
T cd00200         174 TG-----HTGEVNSVAFSPDGEKLLSSS------------------SDGTIKLWDLSTGKCLGTLRGHENGVNSVAFSPD  230 (289)
T ss_pred             ec-----CccccceEEECCCcCEEEEec------------------CCCcEEEEECCCCceecchhhcCCceEEEEEcCC
Confidence            21     123567889999985 55542                  1357888888765544333 22335678999999


Q ss_pred             CCEEEEEEcCCCeEEEEEeecCCCcceEEeccCCCCCCCceEECCCCCEEEEEe
Q 026118          163 ERFLVVCESWKFRCVKHFLKVSGRTDREIFIDNLPGGPDNVNLARDGSFWISII  216 (243)
Q Consensus       163 g~~l~v~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~i~~d~~G~lwv~~~  216 (243)
                      +. ++++...++.|..|+.....  ....+. .....+..+++++++++++...
T Consensus       231 ~~-~~~~~~~~~~i~i~~~~~~~--~~~~~~-~~~~~i~~~~~~~~~~~l~~~~  280 (289)
T cd00200         231 GY-LLASGSEDGTIRVWDLRTGE--CVQTLS-GHTNSVTSLAWSPDGKRLASGS  280 (289)
T ss_pred             Cc-EEEEEcCCCcEEEEEcCCce--eEEEcc-ccCCcEEEEEECCCCCEEEEec
Confidence            77 55554457889999876421  112221 2223456788998887555443

>PRK04043 tolB translocation protein TolB; Provisional

Probab=98.55  E-value=9.5e-05  Score=62.91  Aligned_cols=179  Identities=10%  Similarity=0.030  Sum_probs=102.1

Q ss_pred             cEEEcCCCc--EEEEe-C--CCcEEEEc-cCCceeEecccCCccccceEEccCCCEEEEEeCC---CcEEEEe-cCC-cE
Q 026118           14 DVSVDGNGV--LYTAT-G--DGWIKRMH-PNGTWEDWHQVGSQSLLGLTTTKENNVIIVCDSQ---QGLLKVS-EEG-VT   82 (243)
Q Consensus        14 ~i~~d~~g~--l~~~~-~--~~~i~~~~-~~g~~~~~~~~~~~~~~~i~~~~~g~l~~v~~~~---~gl~~~~-~~g-~~   82 (243)
                      ...+.+||.  +|+.. .  ...|+.++ ..|+.+.+....+... ...++|||+.+.+....   ..|+.++ .++ .+
T Consensus       192 ~p~wSpDG~~~i~y~s~~~~~~~Iyv~dl~tg~~~~lt~~~g~~~-~~~~SPDG~~la~~~~~~g~~~Iy~~dl~~g~~~  270 (419)
T PRK04043        192 FPKWANKEQTAFYYTSYGERKPTLYKYNLYTGKKEKIASSQGMLV-VSDVSKDGSKLLLTMAPKGQPDIYLYDTNTKTLT  270 (419)
T ss_pred             eEEECCCCCcEEEEEEccCCCCEEEEEECCCCcEEEEecCCCcEE-eeEECCCCCEEEEEEccCCCcEEEEEECCCCcEE
Confidence            345567774  56544 2  34688888 4565555433222222 45688999753443322   3588888 556 55


Q ss_pred             EEEeccCCCcccCCccEEEcCCCc-EEEEeCCCCCCcccccccccccCCCceEEEEeCCCCeeEEeeccccccceEEEcC
Q 026118           83 VLVSQFNGSQLRFANDVIEASDGS-LYFTVSSTKFTPAEYYLDLVSGEPHGVLLKYDPSTNQTSLVLDGLYFANGVALSE  161 (243)
Q Consensus        83 ~~~~~~~~~~~~~~~~l~~d~~G~-l~v~~~~~~~~~~~~~~~~~~~~~~g~v~~~~~~~~~~~~~~~~~~~~~gi~~~~  161 (243)
                      .+... .+ ...   ...++|||+ ++++...               .....||+++.++++.+++..... .+ ..++|
T Consensus       271 ~LT~~-~~-~d~---~p~~SPDG~~I~F~Sdr---------------~g~~~Iy~~dl~~g~~~rlt~~g~-~~-~~~SP  328 (419)
T PRK04043        271 QITNY-PG-IDV---NGNFVEDDKRIVFVSDR---------------LGYPNIFMKKLNSGSVEQVVFHGK-NN-SSVST  328 (419)
T ss_pred             EcccC-CC-ccC---ccEECCCCCEEEEEECC---------------CCCceEEEEECCCCCeEeCccCCC-cC-ceECC
Confidence            54321 11 111   236889995 7776432               122479999999888877653211 12 48999


Q ss_pred             CCCEEEEEEcCC--------CeEEEEEeecCCCcceEEeccCCCCCCCceEECCCCC-EEEEEecCCc
Q 026118          162 DERFLVVCESWK--------FRCVKHFLKVSGRTDREIFIDNLPGGPDNVNLARDGS-FWISIIKMDP  220 (243)
Q Consensus       162 dg~~l~v~~~~~--------~~i~~~~~~~~~~~~~~~~~~~~~~~~~~i~~d~~G~-lwv~~~~~~~  220 (243)
                      ||+++.++....        ..|+.++++++.   .+.+...  +.-....+++||+ |++....++.
T Consensus       329 DG~~Ia~~~~~~~~~~~~~~~~I~v~d~~~g~---~~~LT~~--~~~~~p~~SPDG~~I~f~~~~~~~  391 (419)
T PRK04043        329 YKNYIVYSSRETNNEFGKNTFNLYLISTNSDY---IRRLTAN--GVNQFPRFSSDGGSIMFIKYLGNQ  391 (419)
T ss_pred             CCCEEEEEEcCCCcccCCCCcEEEEEECCCCC---eEECCCC--CCcCCeEECCCCCEEEEEEccCCc
Confidence            999887665432        468888876542   2233211  1222367788887 5555554443

>KOG4499 consensus Ca2+-binding protein Regucalcin/SMP30 [Inorganic ion transport and metabolism; Signal transduction mechanisms]

Probab=98.54  E-value=7.1e-06  Score=62.36  Aligned_cols=137  Identities=18%  Similarity=0.168  Sum_probs=87.1

Q ss_pred             EEcCCCcEEEEe-C---------CCcEEEEccCCceeEecccCCccccceEEccCCCEEEEEeCC-CcE--EEEe-cCC-
Q 026118           16 SVDGNGVLYTAT-G---------DGWIKRMHPNGTWEDWHQVGSQSLLGLTTTKENNVIIVCDSQ-QGL--LKVS-EEG-   80 (243)
Q Consensus        16 ~~d~~g~l~~~~-~---------~~~i~~~~~~g~~~~~~~~~~~~~~~i~~~~~g~l~~v~~~~-~gl--~~~~-~~g-   80 (243)
                      -+||+|+.|.++ .         .+.++++-+.+++..+..-...++ +|+.|.+.+.+|+.+.. .-+  +.+| ++| 
T Consensus       115 kvdP~Gryy~GtMad~~~~le~~~g~Ly~~~~~h~v~~i~~~v~IsN-gl~Wd~d~K~fY~iDsln~~V~a~dyd~~tG~  193 (310)
T KOG4499|consen  115 KVDPDGRYYGGTMADFGDDLEPIGGELYSWLAGHQVELIWNCVGISN-GLAWDSDAKKFYYIDSLNYEVDAYDYDCPTGD  193 (310)
T ss_pred             ccCCCCceeeeeeccccccccccccEEEEeccCCCceeeehhccCCc-cccccccCcEEEEEccCceEEeeeecCCCccc
Confidence            468899999886 1         245667767777776554445678 99999887766776643 345  4555 566 


Q ss_pred             ---cEEEEe--ccCCCcccCCccEEEcCCCcEEEEeCCCCCCcccccccccccCCCceEEEEeCCCCeeEEee-cccccc
Q 026118           81 ---VTVLVS--QFNGSQLRFANDVIEASDGSLYFTVSSTKFTPAEYYLDLVSGEPHGVLLKYDPSTNQTSLVL-DGLYFA  154 (243)
Q Consensus        81 ---~~~~~~--~~~~~~~~~~~~l~~d~~G~l~v~~~~~~~~~~~~~~~~~~~~~~g~v~~~~~~~~~~~~~~-~~~~~~  154 (243)
                         .+.+..  .........|.+|++|.+|+||+++.+                 .+.|+++||.+|++..-. -.....
T Consensus       194 ~snr~~i~dlrk~~~~e~~~PDGm~ID~eG~L~Va~~n-----------------g~~V~~~dp~tGK~L~eiklPt~qi  256 (310)
T KOG4499|consen  194 LSNRKVIFDLRKSQPFESLEPDGMTIDTEGNLYVATFN-----------------GGTVQKVDPTTGKILLEIKLPTPQI  256 (310)
T ss_pred             ccCcceeEEeccCCCcCCCCCCcceEccCCcEEEEEec-----------------CcEEEEECCCCCcEEEEEEcCCCce
Confidence               233332  122233467899999999999999754                 468999999999754321 112333


Q ss_pred             ceEEEcCC-CCEEEEEE
Q 026118          155 NGVALSED-ERFLVVCE  170 (243)
Q Consensus       155 ~gi~~~~d-g~~l~v~~  170 (243)
                      .+.+|-.. =..+|++.
T Consensus       257 tsccFgGkn~d~~yvT~  273 (310)
T KOG4499|consen  257 TSCCFGGKNLDILYVTT  273 (310)
T ss_pred             EEEEecCCCccEEEEEe
Confidence            45555322 23466664

>PRK05137 tolB translocation protein TolB; Provisional

Probab=98.53  E-value=5.9e-05  Score=64.65  Aligned_cols=133  Identities=14%  Similarity=0.092  Sum_probs=80.6

Q ss_pred             cEEEEccCCce-eEecccCCccccceEEccCCCEEEEEeCC---CcEEEEe-cCC-cEEEEeccCCCcccCCccEEEcCC
Q 026118           31 WIKRMHPNGTW-EDWHQVGSQSLLGLTTTKENNVIIVCDSQ---QGLLKVS-EEG-VTVLVSQFNGSQLRFANDVIEASD  104 (243)
Q Consensus        31 ~i~~~~~~g~~-~~~~~~~~~~~~~i~~~~~g~l~~v~~~~---~gl~~~~-~~g-~~~~~~~~~~~~~~~~~~l~~d~~  104 (243)
                      .|+..|.+|.. +.+... ..+.....+++||+.|..+...   ..|+.++ .+| .+.+.. ..+    ......++||
T Consensus       183 ~l~~~d~dg~~~~~lt~~-~~~v~~p~wSpDG~~lay~s~~~g~~~i~~~dl~~g~~~~l~~-~~g----~~~~~~~SPD  256 (435)
T PRK05137        183 RLAIMDQDGANVRYLTDG-SSLVLTPRFSPNRQEITYMSYANGRPRVYLLDLETGQRELVGN-FPG----MTFAPRFSPD  256 (435)
T ss_pred             EEEEECCCCCCcEEEecC-CCCeEeeEECCCCCEEEEEEecCCCCEEEEEECCCCcEEEeec-CCC----cccCcEECCC
Confidence            56666654442 222221 2233367889999853443322   3588888 666 444432 111    2235588999


Q ss_pred             Cc-EEEEeCCCCCCcccccccccccCCCceEEEEeCCCCeeEEeeccccccceEEEcCCCCEEEEEEcC--CCeEEEEEe
Q 026118          105 GS-LYFTVSSTKFTPAEYYLDLVSGEPHGVLLKYDPSTNQTSLVLDGLYFANGVALSEDERFLVVCESW--KFRCVKHFL  181 (243)
Q Consensus       105 G~-l~v~~~~~~~~~~~~~~~~~~~~~~g~v~~~~~~~~~~~~~~~~~~~~~gi~~~~dg~~l~v~~~~--~~~i~~~~~  181 (243)
                      |+ +.++.+.               .....||.+|.++++.+++...........++|||+.|+++...  ...|++++.
T Consensus       257 G~~la~~~~~---------------~g~~~Iy~~d~~~~~~~~Lt~~~~~~~~~~~spDG~~i~f~s~~~g~~~Iy~~d~  321 (435)
T PRK05137        257 GRKVVMSLSQ---------------GGNTDIYTMDLRSGTTTRLTDSPAIDTSPSYSPDGSQIVFESDRSGSPQLYVMNA  321 (435)
T ss_pred             CCEEEEEEec---------------CCCceEEEEECCCCceEEccCCCCccCceeEcCCCCEEEEEECCCCCCeEEEEEC
Confidence            96 4454321               12346999999988887776544445568999999988776533  347888887


Q ss_pred             ecC
Q 026118          182 KVS  184 (243)
Q Consensus       182 ~~~  184 (243)
                      ++.
T Consensus       322 ~g~  324 (435)
T PRK05137        322 DGS  324 (435)
T ss_pred             CCC
Confidence            653

>cd00200 WD40 WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and botto

Probab=98.52  E-value=8.9e-05  Score=58.23  Aligned_cols=177  Identities=18%  Similarity=0.155  Sum_probs=106.4

Q ss_pred             cEEEcCCC-cEEEEeCCCcEEEEccCC--ceeEecccCCccccceEEccCCCEEEEEeCCCcEEEEe-cCC-cEEEEecc
Q 026118           14 DVSVDGNG-VLYTATGDGWIKRMHPNG--TWEDWHQVGSQSLLGLTTTKENNVIIVCDSQQGLLKVS-EEG-VTVLVSQF   88 (243)
Q Consensus        14 ~i~~d~~g-~l~~~~~~~~i~~~~~~g--~~~~~~~~~~~~~~~i~~~~~g~l~~v~~~~~gl~~~~-~~g-~~~~~~~~   88 (243)
                      .+.+.+++ .++++..++.|..++...  ....+........ .+.+++++++++++...+.+..++ .++ ......  
T Consensus        56 ~~~~~~~~~~l~~~~~~~~i~i~~~~~~~~~~~~~~~~~~i~-~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~--  132 (289)
T cd00200          56 DVAASADGTYLASGSSDKTIRLWDLETGECVRTLTGHTSYVS-SVAFSPDGRILSSSSRDKTIKVWDVETGKCLTTLR--  132 (289)
T ss_pred             EEEECCCCCEEEEEcCCCeEEEEEcCcccceEEEeccCCcEE-EEEEcCCCCEEEEecCCCeEEEEECCCcEEEEEec--
Confidence            67777777 566777788898888432  3333332222344 788888888834443355677777 444 222111  


Q ss_pred             CCCcccCCccEEEcCCCcEEEEeCCCCCCcccccccccccCCCceEEEEeCCCCeeEEee-ccccccceEEEcCCCCEEE
Q 026118           89 NGSQLRFANDVIEASDGSLYFTVSSTKFTPAEYYLDLVSGEPHGVLLKYDPSTNQTSLVL-DGLYFANGVALSEDERFLV  167 (243)
Q Consensus        89 ~~~~~~~~~~l~~d~~G~l~v~~~~~~~~~~~~~~~~~~~~~~g~v~~~~~~~~~~~~~~-~~~~~~~gi~~~~dg~~l~  167 (243)
                        .....+.++.+++++.++++..                 ..+.|..+|..+++..... ........+.++++++.++
T Consensus       133 --~~~~~i~~~~~~~~~~~l~~~~-----------------~~~~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~  193 (289)
T cd00200         133 --GHTDWVNSVAFSPDGTFVASSS-----------------QDGTIKLWDLRTGKCVATLTGHTGEVNSVAFSPDGEKLL  193 (289)
T ss_pred             --cCCCcEEEEEEcCcCCEEEEEc-----------------CCCcEEEEEccccccceeEecCccccceEEECCCcCEEE
Confidence              1123467888999887777632                 1356888887755543332 2233567899999998777


Q ss_pred             EEEcCCCeEEEEEeecCCCcceEEeccCCCCCCCceEECCCCCEEEEEe
Q 026118          168 VCESWKFRCVKHFLKVSGRTDREIFIDNLPGGPDNVNLARDGSFWISII  216 (243)
Q Consensus       168 v~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~i~~d~~G~lwv~~~  216 (243)
                      ++.. ++.|..|+......  ...+. .....+..+++++++.++++..
T Consensus       194 ~~~~-~~~i~i~d~~~~~~--~~~~~-~~~~~i~~~~~~~~~~~~~~~~  238 (289)
T cd00200         194 SSSS-DGTIKLWDLSTGKC--LGTLR-GHENGVNSVAFSPDGYLLASGS  238 (289)
T ss_pred             EecC-CCcEEEEECCCCce--ecchh-hcCCceEEEEEcCCCcEEEEEc
Confidence            7754 78899998764211  11110 1122455678888777666655

>TIGR02800 propeller_TolB tol-pal system beta propeller repeat protein TolB

Probab=98.50  E-value=0.00011  Score=62.45  Aligned_cols=179  Identities=12%  Similarity=0.097  Sum_probs=100.8

Q ss_pred             EEEcCCCc-EEEEe-C--CCcEEEEc-cCCceeEecccCCccccceEEccCCCEEEEEeCC---CcEEEEe-cCC-cEEE
Q 026118           15 VSVDGNGV-LYTAT-G--DGWIKRMH-PNGTWEDWHQVGSQSLLGLTTTKENNVIIVCDSQ---QGLLKVS-EEG-VTVL   84 (243)
Q Consensus        15 i~~d~~g~-l~~~~-~--~~~i~~~~-~~g~~~~~~~~~~~~~~~i~~~~~g~l~~v~~~~---~gl~~~~-~~g-~~~~   84 (243)
                      .++.++|+ |+++. .  ...|+.++ .+++............ .+++++||+.++++...   ..|+.++ .++ .+.+
T Consensus       195 p~~Spdg~~la~~~~~~~~~~i~v~d~~~g~~~~~~~~~~~~~-~~~~spDg~~l~~~~~~~~~~~i~~~d~~~~~~~~l  273 (417)
T TIGR02800       195 PAWSPDGQKLAYVSFESGKPEIYVQDLATGQREKVASFPGMNG-APAFSPDGSKLAVSLSKDGNPDIYVMDLDGKQLTRL  273 (417)
T ss_pred             ccCCCCCCEEEEEEcCCCCcEEEEEECCCCCEEEeecCCCCcc-ceEECCCCCEEEEEECCCCCccEEEEECCCCCEEEC
Confidence            44667774 44433 2  24578887 3455544433223334 67889999854544322   2488888 555 4433


Q ss_pred             EeccCCCcccCCccEEEcCCCc-EEEEeCCCCCCcccccccccccCCCceEEEEeCCCCeeEEeeccccccceEEEcCCC
Q 026118           85 VSQFNGSQLRFANDVIEASDGS-LYFTVSSTKFTPAEYYLDLVSGEPHGVLLKYDPSTNQTSLVLDGLYFANGVALSEDE  163 (243)
Q Consensus        85 ~~~~~~~~~~~~~~l~~d~~G~-l~v~~~~~~~~~~~~~~~~~~~~~~g~v~~~~~~~~~~~~~~~~~~~~~gi~~~~dg  163 (243)
                      ... .    .......++++|+ ++++...               .....||.++.++++.+++.........++++++|
T Consensus       274 ~~~-~----~~~~~~~~s~dg~~l~~~s~~---------------~g~~~iy~~d~~~~~~~~l~~~~~~~~~~~~spdg  333 (417)
T TIGR02800       274 TNG-P----GIDTEPSWSPDGKSIAFTSDR---------------GGSPQIYMMDADGGEVRRLTFRGGYNASPSWSPDG  333 (417)
T ss_pred             CCC-C----CCCCCEEECCCCCEEEEEECC---------------CCCceEEEEECCCCCEEEeecCCCCccCeEECCCC
Confidence            221 1    1112346788886 4444221               12237999999888777765444455678999999


Q ss_pred             CEEEEEEcCC--CeEEEEEeecCCCcceEEeccCCCCCCCceEECCCCC-EEEEEecCC
Q 026118          164 RFLVVCESWK--FRCVKHFLKVSGRTDREIFIDNLPGGPDNVNLARDGS-FWISIIKMD  219 (243)
Q Consensus       164 ~~l~v~~~~~--~~i~~~~~~~~~~~~~~~~~~~~~~~~~~i~~d~~G~-lwv~~~~~~  219 (243)
                      ++++++....  ..|+.+++.+.   ..+.+..  .......++.++|+ |+++...++
T Consensus       334 ~~i~~~~~~~~~~~i~~~d~~~~---~~~~l~~--~~~~~~p~~spdg~~l~~~~~~~~  387 (417)
T TIGR02800       334 DLIAFVHREGGGFNIAVMDLDGG---GERVLTD--TGLDESPSFAPNGRMILYATTRGG  387 (417)
T ss_pred             CEEEEEEccCCceEEEEEeCCCC---CeEEccC--CCCCCCceECCCCCEEEEEEeCCC
Confidence            9888876532  36788887652   2233321  11223456777776 555444433

The Tol-PAL system is required for bacterial outer membrane integrity. E. coli TolB is involved in the tonB-independent uptake of group A colicins (colicins A, E1, E2, E3 and K), and is necessary for the colicins to reach their respective targets after initial binding to the bacteria. It is also involved in uptake of filamentous DNA. Study of its structure suggest that the TolB protein might be involved in the recycling of peptidoglycan or in its covalent linking with lipoproteins. The Tol-Pal system is also implicated in pathogenesis of E. coli, Haemophilus ducreyi, Salmonella enterica and Vibrio cholerae, but the mechanism(s) is unclear.

>COG3204 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=98.49  E-value=0.00012  Score=57.63  Aligned_cols=190  Identities=11%  Similarity=0.053  Sum_probs=113.3

Q ss_pred             cCCcccEEEcCCC-cEEEEe-CCCcEEEEccCCceeEeccc--CCccccceEEccCCCEEEEEeCCC-cEEEEe--cCC-
Q 026118            9 VNHPEDVSVDGNG-VLYTAT-GDGWIKRMHPNGTWEDWHQV--GSQSLLGLTTTKENNVIIVCDSQQ-GLLKVS--EEG-   80 (243)
Q Consensus         9 ~~~p~~i~~d~~g-~l~~~~-~~~~i~~~~~~g~~~~~~~~--~~~~~~~i~~~~~g~l~~v~~~~~-gl~~~~--~~g-   80 (243)
                      ..+-.+++++++. +||..+ ..-.|..++.+|++..-...  ...|. +|..-.+|.+ .+++... .++.+.  ++. 
T Consensus        85 ~~nvS~LTynp~~rtLFav~n~p~~iVElt~~GdlirtiPL~g~~DpE-~Ieyig~n~f-vi~dER~~~l~~~~vd~~t~  162 (316)
T COG3204          85 TANVSSLTYNPDTRTLFAVTNKPAAIVELTKEGDLIRTIPLTGFSDPE-TIEYIGGNQF-VIVDERDRALYLFTVDADTT  162 (316)
T ss_pred             cccccceeeCCCcceEEEecCCCceEEEEecCCceEEEecccccCChh-HeEEecCCEE-EEEehhcceEEEEEEcCCcc
Confidence            4567889999866 566554 45578888888886553321  23466 7777676666 6666543 455554  332 


Q ss_pred             cEEEEe-----ccCCCcccCCccEEEcCC-CcEEEEeCCCCCCcccccccccccCCCceEEEEeCCCCeeEEee-cc---
Q 026118           81 VTVLVS-----QFNGSQLRFANDVIEASD-GSLYFTVSSTKFTPAEYYLDLVSGEPHGVLLKYDPSTNQTSLVL-DG---  150 (243)
Q Consensus        81 ~~~~~~-----~~~~~~~~~~~~l~~d~~-G~l~v~~~~~~~~~~~~~~~~~~~~~~g~v~~~~~~~~~~~~~~-~~---  150 (243)
                      +..+..     ......+-+..|++.|+. +++|++--.                .--+||.++.....+..-. .+   
T Consensus       163 ~~~~~~~~i~L~~~~k~N~GfEGlA~d~~~~~l~~aKEr----------------~P~~I~~~~~~~~~l~~~~~~~~~~  226 (316)
T COG3204         163 VISAKVQKIPLGTTNKKNKGFEGLAWDPVDHRLFVAKER----------------NPIGIFEVTQSPSSLSVHASLDPTA  226 (316)
T ss_pred             EEeccceEEeccccCCCCcCceeeecCCCCceEEEEEcc----------------CCcEEEEEecCCcccccccccCccc
Confidence            222111     111112346678999994 678887321                1236887775422221110 00   


Q ss_pred             -----ccccceEEEcCCCCEEEEEEcCCCeEEEEEeecCCCcceEEeccCCC------CCCCceEECCCCCEEEEEec
Q 026118          151 -----LYFANGVALSEDERFLVVCESWKFRCVKHFLKVSGRTDREIFIDNLP------GGPDNVNLARDGSFWISIIK  217 (243)
Q Consensus       151 -----~~~~~gi~~~~dg~~l~v~~~~~~~i~~~~~~~~~~~~~~~~~~~~~------~~~~~i~~d~~G~lwv~~~~  217 (243)
                           ..-..|+.+++..+.|+|-...+..|...+.++...+..... .+..      ..+.|+++|.+|+|||..--
T Consensus       227 ~~~~f~~DvSgl~~~~~~~~LLVLS~ESr~l~Evd~~G~~~~~lsL~-~g~~gL~~dipqaEGiamDd~g~lYIvSEP  303 (316)
T COG3204         227 DRDLFVLDVSGLEFNAITNSLLVLSDESRRLLEVDLSGEVIELLSLT-KGNHGLSSDIPQAEGIAMDDDGNLYIVSEP  303 (316)
T ss_pred             ccceEeeccccceecCCCCcEEEEecCCceEEEEecCCCeeeeEEec-cCCCCCcccCCCcceeEECCCCCEEEEecC
Confidence                 123468999987777888878888899988877532222111 1111      25889999999999997643

>KOG4659 consensus Uncharacterized conserved protein (Rhs family) [Function unknown]

Probab=98.49  E-value=6.5e-06  Score=75.55  Aligned_cols=153  Identities=20%  Similarity=0.276  Sum_probs=96.9

Q ss_pred             cccCCcccEEEcCCCcEEEEeCCCcEEEEccCCceeEec--------------------ccCCccccceEEccCCCEEEE
Q 026118            7 GIVNHPEDVSVDGNGVLYTATGDGWIKRMHPNGTWEDWH--------------------QVGSQSLLGLTTTKENNVIIV   66 (243)
Q Consensus         7 g~~~~p~~i~~d~~g~l~~~~~~~~i~~~~~~g~~~~~~--------------------~~~~~~~~~i~~~~~g~l~~v   66 (243)
                      ..+..|.+|++|.+|.||+++. -.|..+|.+|-+....                    .....|. .++++|-.+-|+|
T Consensus       472 A~L~~PkGIa~dk~g~lYfaD~-t~IR~iD~~giIstlig~~~~~~~p~~C~~~~kl~~~~leWPT-~LaV~Pmdnsl~V  549 (1899)
T KOG4659|consen  472 AQLIFPKGIAFDKMGNLYFADG-TRIRVIDTTGIISTLIGTTPDQHPPRTCAQITKLVDLQLEWPT-SLAVDPMDNSLLV  549 (1899)
T ss_pred             ceeccCCceeEccCCcEEEecc-cEEEEeccCceEEEeccCCCCccCccccccccchhheeeeccc-ceeecCCCCeEEE
Confidence            3577899999999999999964 3577777666444321                    0113577 8999986554488


Q ss_pred             EeCCCcEEEEecCC-cEEEEecc-----C-----------CCcccCCccEEEcCCCcEEEEeCCCCCCcccccccccccC
Q 026118           67 CDSQQGLLKVSEEG-VTVLVSQF-----N-----------GSQLRFANDVIEASDGSLYFTVSSTKFTPAEYYLDLVSGE  129 (243)
Q Consensus        67 ~~~~~gl~~~~~~g-~~~~~~~~-----~-----------~~~~~~~~~l~~d~~G~l~v~~~~~~~~~~~~~~~~~~~~  129 (243)
                      -+. +=|++++..+ ++.+...+     +           ...+..+.++++.++|.||++.+..              .
T Consensus       550 ld~-nvvlrit~~~rV~Ii~GrP~hC~~a~~t~~~skla~H~tl~~~r~Iavg~~G~lyvaEsD~--------------r  614 (1899)
T KOG4659|consen  550 LDT-NVVLRITVVHRVRIILGRPTHCDLANATSSASKLADHRTLLIQRDIAVGTDGALYVAESDG--------------R  614 (1899)
T ss_pred             eec-ceEEEEccCccEEEEcCCccccccCCCchhhhhhhhhhhhhhhhceeecCCceEEEEeccc--------------h
Confidence            763 4567777655 54332111     0           0123356789999999999997642              1


Q ss_pred             CCceEEEEeCCCCeeEEeec--------------------------cccccceEEEcCCCCEEEEEEcCCCeEEE
Q 026118          130 PHGVLLKYDPSTNQTSLVLD--------------------------GLYFANGVALSEDERFLVVCESWKFRCVK  178 (243)
Q Consensus       130 ~~g~v~~~~~~~~~~~~~~~--------------------------~~~~~~gi~~~~dg~~l~v~~~~~~~i~~  178 (243)
                      .-++|-++..+ |++..++.                          .+..|..+|++|||. +|+++.++-+|..
T Consensus       615 riNrvr~~~td-g~i~ilaGa~S~C~C~~~~~cdcfs~~~~~At~A~lnsp~alaVsPdg~-v~IAD~gN~rIr~  687 (1899)
T KOG4659|consen  615 RINRVRKLSTD-GTISILAGAKSPCSCDVAACCDCFSLRDVAATQAKLNSPYALAVSPDGD-VIIADSGNSRIRK  687 (1899)
T ss_pred             hhhheEEeccC-ceEEEecCCCCCCCcccccCCccccccchhhhccccCCcceEEECCCCc-EEEecCCchhhhh
Confidence            22334444444 33333321                          134578899999999 9999987655544

>TIGR02658 TTQ_MADH_Hv methylamine dehydrogenase heavy chain

Probab=98.47  E-value=0.00012  Score=60.32  Aligned_cols=181  Identities=13%  Similarity=0.138  Sum_probs=93.1

Q ss_pred             CCcccEEEcCCC-cEEEEe-C-CCcEEEEc-cCCceeEecccCCccccceEEccCCCEEEEEeCCCcEEE--EecCC-cE
Q 026118           10 NHPEDVSVDGNG-VLYTAT-G-DGWIKRMH-PNGTWEDWHQVGSQSLLGLTTTKENNVIIVCDSQQGLLK--VSEEG-VT   82 (243)
Q Consensus        10 ~~p~~i~~d~~g-~l~~~~-~-~~~i~~~~-~~g~~~~~~~~~~~~~~~i~~~~~g~l~~v~~~~~gl~~--~~~~g-~~   82 (243)
                      ..|..+++.+|| .||+.+ . +..|..+| ..+++..-...+. .. .+....+...+..|. +.....  ++.+| ..
T Consensus       105 ~~~~~~~ls~dgk~l~V~n~~p~~~V~VvD~~~~kvv~ei~vp~-~~-~vy~t~e~~~~~~~~-Dg~~~~v~~d~~g~~~  181 (352)
T TIGR02658       105 TYPWMTSLTPDNKTLLFYQFSPSPAVGVVDLEGKAFVRMMDVPD-CY-HIFPTANDTFFMHCR-DGSLAKVGYGTKGNPK  181 (352)
T ss_pred             CccceEEECCCCCEEEEecCCCCCEEEEEECCCCcEEEEEeCCC-Cc-EEEEecCCccEEEee-cCceEEEEecCCCceE
Confidence            345689999998 599888 3 67899999 4555544222212 12 222222222212222 222333  23334 11


Q ss_pred             EEEe-ccCC---CcccCCccEEEcC-CCcEEEEeCCCCCCcccccccccccCCCceEEEEeCCCCeeEE-----e-e---
Q 026118           83 VLVS-QFNG---SQLRFANDVIEAS-DGSLYFTVSSTKFTPAEYYLDLVSGEPHGVLLKYDPSTNQTSL-----V-L---  148 (243)
Q Consensus        83 ~~~~-~~~~---~~~~~~~~l~~d~-~G~l~v~~~~~~~~~~~~~~~~~~~~~~g~v~~~~~~~~~~~~-----~-~---  148 (243)
                      .-.. .+..   .-...|   .+.+ +|+.++.+                  ..|.|+.+|..+.....     . .   
T Consensus       182 ~~~~~vf~~~~~~v~~rP---~~~~~dg~~~~vs------------------~eG~V~~id~~~~~~~~~~~~~~~~~~~  240 (352)
T TIGR02658       182 IKPTEVFHPEDEYLINHP---AYSNKSGRLVWPT------------------YTGKIFQIDLSSGDAKFLPAIEAFTEAE  240 (352)
T ss_pred             EeeeeeecCCccccccCC---ceEcCCCcEEEEe------------------cCCeEEEEecCCCcceecceeeeccccc
Confidence            1100 1111   111223   2334 66644432                  12689999854332221     1 1   


Q ss_pred             -ccccccce---EEEcCCCCEEEEEE---------cCCCeEEEEEeecCCCcceEEeccCCCCCCCceEECCCCC-EEEE
Q 026118          149 -DGLYFANG---VALSEDERFLVVCE---------SWKFRCVKHFLKVSGRTDREIFIDNLPGGPDNVNLARDGS-FWIS  214 (243)
Q Consensus       149 -~~~~~~~g---i~~~~dg~~l~v~~---------~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~i~~d~~G~-lwv~  214 (243)
                       .....|-|   ++++++++.+||+.         ...+.|+.+|.....  ....+  .....|.+|++++||+ +.+.
T Consensus       241 ~~~~wrP~g~q~ia~~~dg~~lyV~~~~~~~~thk~~~~~V~ViD~~t~k--vi~~i--~vG~~~~~iavS~Dgkp~lyv  316 (352)
T TIGR02658       241 KADGWRPGGWQQVAYHRARDRIYLLADQRAKWTHKTASRFLFVVDAKTGK--RLRKI--ELGHEIDSINVSQDAKPLLYA  316 (352)
T ss_pred             cccccCCCcceeEEEcCCCCEEEEEecCCccccccCCCCEEEEEECCCCe--EEEEE--eCCCceeeEEECCCCCeEEEE
Confidence             11234444   99999999999952         223689999975431  12222  1234688999999998 5554


Q ss_pred             EecC
Q 026118          215 IIKM  218 (243)
Q Consensus       215 ~~~~  218 (243)
                      +++.
T Consensus       317 tn~~  320 (352)
T TIGR02658       317 LSTG  320 (352)
T ss_pred             eCCC
Confidence            5543

This family consists of the heavy chain of methylamine dehydrogenase light chain, a periplasmic enzyme. The enzyme contains a tryptophan tryptophylquinone (TTQ) prothetic group derived from two Trp residues in the light subunity. The enzyme forms a complex with the type I blue copper protein amicyanin and a cytochrome. Electron transfer procedes from TQQ to the copper and then to the heme group of the cytochrome.

>PRK02889 tolB translocation protein TolB; Provisional

Probab=98.44  E-value=0.00017  Score=61.74  Aligned_cols=155  Identities=9%  Similarity=0.083  Sum_probs=86.9

Q ss_pred             cEEEEccCCce-eEecccCCccccceEEccCCCEEEEEeCCC---cEEEEe-cCC-cEEEEeccCCCcccCCccEEEcCC
Q 026118           31 WIKRMHPNGTW-EDWHQVGSQSLLGLTTTKENNVIIVCDSQQ---GLLKVS-EEG-VTVLVSQFNGSQLRFANDVIEASD  104 (243)
Q Consensus        31 ~i~~~~~~g~~-~~~~~~~~~~~~~i~~~~~g~l~~v~~~~~---gl~~~~-~~g-~~~~~~~~~~~~~~~~~~l~~d~~  104 (243)
                      .|+..|.+|.. ..+... ..+....+++|||+.++++....   .|+.++ .+| .+.+.. ..+    .....+++||
T Consensus       177 ~L~~~D~dG~~~~~l~~~-~~~v~~p~wSPDG~~la~~s~~~~~~~I~~~dl~~g~~~~l~~-~~g----~~~~~~~SPD  250 (427)
T PRK02889        177 QLQISDADGQNAQSALSS-PEPIISPAWSPDGTKLAYVSFESKKPVVYVHDLATGRRRVVAN-FKG----SNSAPAWSPD  250 (427)
T ss_pred             EEEEECCCCCCceEeccC-CCCcccceEcCCCCEEEEEEccCCCcEEEEEECCCCCEEEeec-CCC----CccceEECCC
Confidence            56666655543 222221 22333678899998644444332   388888 666 444432 111    2235689999


Q ss_pred             Cc-EEEEeCCCCCCcccccccccccCCCceEEEEeCCCCeeEEeeccccccceEEEcCCCCEEEEEEcC--CCeEEEEEe
Q 026118          105 GS-LYFTVSSTKFTPAEYYLDLVSGEPHGVLLKYDPSTNQTSLVLDGLYFANGVALSEDERFLVVCESW--KFRCVKHFL  181 (243)
Q Consensus       105 G~-l~v~~~~~~~~~~~~~~~~~~~~~~g~v~~~~~~~~~~~~~~~~~~~~~gi~~~~dg~~l~v~~~~--~~~i~~~~~  181 (243)
                      |+ +.++.+.               .....||.++.+++..+++...........|+|||+.|+++...  ...|+.++.
T Consensus       251 G~~la~~~~~---------------~g~~~Iy~~d~~~~~~~~lt~~~~~~~~~~wSpDG~~l~f~s~~~g~~~Iy~~~~  315 (427)
T PRK02889        251 GRTLAVALSR---------------DGNSQIYTVNADGSGLRRLTQSSGIDTEPFFSPDGRSIYFTSDRGGAPQIYRMPA  315 (427)
T ss_pred             CCEEEEEEcc---------------CCCceEEEEECCCCCcEECCCCCCCCcCeEEcCCCCEEEEEecCCCCcEEEEEEC
Confidence            96 5554322               12347999999877777765443344567899999988766432  346777765


Q ss_pred             ecCCCcceEEeccCCCCCCCceEECCCCC
Q 026118          182 KVSGRTDREIFIDNLPGGPDNVNLARDGS  210 (243)
Q Consensus       182 ~~~~~~~~~~~~~~~~~~~~~i~~d~~G~  210 (243)
                      +++..  ..+..  ........+++++|+
T Consensus       316 ~~g~~--~~lt~--~g~~~~~~~~SpDG~  340 (427)
T PRK02889        316 SGGAA--QRVTF--TGSYNTSPRISPDGK  340 (427)
T ss_pred             CCCce--EEEec--CCCCcCceEECCCCC
Confidence            54321  11111  112223456777776

>KOG0315 consensus G-protein beta subunit-like protein (contains WD40 repeats) [General function prediction only]

Probab=98.40  E-value=8.5e-05  Score=56.98  Aligned_cols=181  Identities=14%  Similarity=0.124  Sum_probs=106.9

Q ss_pred             CCcccEEEcCCCc-EEEEeCCCcEEEEccCC--ceeEecccCCccccceEEccCCCEEEEEeCCCcEEEEe-cCC-cEEE
Q 026118           10 NHPEDVSVDGNGV-LYTATGDGWIKRMHPNG--TWEDWHQVGSQSLLGLTTTKENNVIIVCDSQQGLLKVS-EEG-VTVL   84 (243)
Q Consensus        10 ~~p~~i~~d~~g~-l~~~~~~~~i~~~~~~g--~~~~~~~~~~~~~~~i~~~~~g~l~~v~~~~~gl~~~~-~~g-~~~~   84 (243)
                      .+--.+.|--+|+ +|.+.++|.+..+|...  ..+.+..  ..|...+.+.|+..-|++++..+.|..+| .+. ....
T Consensus        84 kNVtaVgF~~dgrWMyTgseDgt~kIWdlR~~~~qR~~~~--~spVn~vvlhpnQteLis~dqsg~irvWDl~~~~c~~~  161 (311)
T KOG0315|consen   84 KNVTAVGFQCDGRWMYTGSEDGTVKIWDLRSLSCQRNYQH--NSPVNTVVLHPNQTELISGDQSGNIRVWDLGENSCTHE  161 (311)
T ss_pred             CceEEEEEeecCeEEEecCCCceEEEEeccCcccchhccC--CCCcceEEecCCcceEEeecCCCcEEEEEccCCccccc
Confidence            4445566666775 77777888888887221  1112222  24554788888765449998777899998 444 3221


Q ss_pred             EeccCCCcccCCccEEEcCCCcEEEEeCCCCCCcccccccccccCCCceEEEEeCCCCe----eEEee---ccccccceE
Q 026118           85 VSQFNGSQLRFANDVIEASDGSLYFTVSSTKFTPAEYYLDLVSGEPHGVLLKYDPSTNQ----TSLVL---DGLYFANGV  157 (243)
Q Consensus        85 ~~~~~~~~~~~~~~l~~d~~G~l~v~~~~~~~~~~~~~~~~~~~~~~g~v~~~~~~~~~----~~~~~---~~~~~~~gi  157 (243)
                      .. ++  ....+.++.+.+||.+.++-..                 .|..|..+.-+..    ++++.   ....+....
T Consensus       162 li-Pe--~~~~i~sl~v~~dgsml~a~nn-----------------kG~cyvW~l~~~~~~s~l~P~~k~~ah~~~il~C  221 (311)
T KOG0315|consen  162 LI-PE--DDTSIQSLTVMPDGSMLAAANN-----------------KGNCYVWRLLNHQTASELEPVHKFQAHNGHILRC  221 (311)
T ss_pred             cC-CC--CCcceeeEEEcCCCcEEEEecC-----------------CccEEEEEccCCCccccceEhhheecccceEEEE
Confidence            11 11  1256778999999998877432                 3566666654332    22221   122344567


Q ss_pred             EEcCCCCEEEEEEcCCCeEEEEEeecCCCcceEEeccCCCCCCCceEECCCCCEEEEE
Q 026118          158 ALSEDERFLVVCESWKFRCVKHFLKVSGRTDREIFIDNLPGGPDNVNLARDGSFWISI  215 (243)
Q Consensus       158 ~~~~dg~~l~v~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~i~~d~~G~lwv~~  215 (243)
                      .+|||+++|..+ ..+..+..++.++- +.. +.....-....-+-+++.||+..|..
T Consensus       222 ~lSPd~k~lat~-ssdktv~iwn~~~~-~kl-e~~l~gh~rWvWdc~FS~dg~YlvTa  276 (311)
T KOG0315|consen  222 LLSPDVKYLATC-SSDKTVKIWNTDDF-FKL-ELVLTGHQRWVWDCAFSADGEYLVTA  276 (311)
T ss_pred             EECCCCcEEEee-cCCceEEEEecCCc-eee-EEEeecCCceEEeeeeccCccEEEec
Confidence            899999966655 45688888887764 211 11111222344557888888755543

>PF01731 Arylesterase: Arylesterase; InterPro: IPR002640 The serum paraoxonases/arylesterases are enzymes that catalyse the hydrolysis of the toxic metabolites of a variety of organophosphorus insecticides

Probab=98.38  E-value=5.6e-06  Score=53.60  Aligned_cols=82  Identities=29%  Similarity=0.436  Sum_probs=56.6

Q ss_pred             cEEEcCCCcEEEEeCCCCCCccccc-ccccccCCCceEEEEeCCCCeeEEeeccccccceEEEcCCCCEEEEEEcCCCeE
Q 026118           98 DVIEASDGSLYFTVSSTKFTPAEYY-LDLVSGEPHGVLLKYDPSTNQTSLVLDGLYFANGVALSEDERFLVVCESWKFRC  176 (243)
Q Consensus        98 ~l~~d~~G~l~v~~~~~~~~~~~~~-~~~~~~~~~g~v~~~~~~~~~~~~~~~~~~~~~gi~~~~dg~~l~v~~~~~~~i  176 (243)
                      +|+.-...++|+|+.+. |...... ..+......+.|+.|++.  +.+.++.+...||||++++++++|||++...+.|
T Consensus         2 DIvavG~~sFy~TNDhy-f~~~~l~~lE~~l~~~~~~Vvyyd~~--~~~~va~g~~~aNGI~~s~~~k~lyVa~~~~~~I   78 (86)
T PF01731_consen    2 DIVAVGPDSFYVTNDHY-FTDPFLRLLETYLGLPWGNVVYYDGK--EVKVVASGFSFANGIAISPDKKYLYVASSLAHSI   78 (86)
T ss_pred             CEEEECcCcEEEECchh-hCcHHHHHHHHHhcCCCceEEEEeCC--EeEEeeccCCCCceEEEcCCCCEEEEEeccCCeE
Confidence            34444445688887642 2211100 112223345678889985  6777888899999999999999999999999999


Q ss_pred             EEEEee
Q 026118          177 VKHFLK  182 (243)
Q Consensus       177 ~~~~~~  182 (243)
                      ..|..+
T Consensus        79 ~vy~~~   84 (86)
T PF01731_consen   79 HVYKRH   84 (86)
T ss_pred             EEEEec
Confidence            998764

The enzymes hydrolyse a broad spectrum of organophosphate substrates, including paraoxon and a number of aromatic carboxylic acid esters (e.g., phenyl acetate), and hence confer resistance to organophosphate toxicity []. Mammals have 3 distinct paraoxonase types, termed PON1-3 [, ]. In mice and humans, the PON genes are found on the same chromosome in close proximity. PON activity has been found in variety of tissues, with highest levels in liver and serum - the source of serum PON is thought to be the liver. Unlike mammals, fish and avian species lack paraoxonase activity. Human and rabbit PONs appear to have two distinct Ca2+ binding sites, one required for stability and one required for catalytic activity. The Ca2+ dependency of PONs suggests a mechanism of hydrolysis where Ca2+ acts as the electrophillic catalyst, like that proposed for phospholipase A2. The paraoxonase enzymes, PON1 and PON3, are high density lipoprotein (HDL)- associated proteins capable of preventing oxidative modification of low density lipoproteins (LPL) []. Although PON2 has oxidative properties, the enzyme does not associate with HDL. Within a given species, PON1, PON2 and PON3 share ~60% amino acid sequence identity, whereas between mammalian species particular PONs (1,2 or 3) share 79-90% identity at the amino acid level. Human PON1 and PON3 share numerous conserved phosphorylation and N-glycosylation sites; however, it is not known whether the PON proteins are modified at these sites, or whether modification at these sites is required for activity in vivo []. This family consists of arylesterases (Also known as serum paraoxonase) 3.1.1.2 from EC. These enzymes hydrolyse organophosphorus esters such as paraoxon and are found in the liver and blood. They confer resistance to organophosphate toxicity []. Human arylesterase (PON1) P27169 from SWISSPROT is associated with HDL and may protect against LDL oxidation [].; GO: 0004064 arylesterase activity

>KOG1214 consensus Nidogen and related basement membrane protein proteins [Cell wall/membrane/envelope biogenesis; Extracellular structures]

Probab=98.38  E-value=2.4e-05  Score=69.06  Aligned_cols=176  Identities=18%  Similarity=0.153  Sum_probs=110.3

Q ss_pred             CCCc-EEEEeCCCcEEEEccCCc------ee-EecccCCccccceEEccCCCEEEEEeCCC-cEEEEecCC--cEEEEec
Q 026118           19 GNGV-LYTATGDGWIKRMHPNGT------WE-DWHQVGSQSLLGLTTTKENNVIIVCDSQQ-GLLKVSEEG--VTVLVSQ   87 (243)
Q Consensus        19 ~~g~-l~~~~~~~~i~~~~~~g~------~~-~~~~~~~~~~~~i~~~~~g~l~~v~~~~~-gl~~~~~~g--~~~~~~~   87 (243)
                      +-|+ |.++ ..+.|.++..++.      .+ .+..+...+. ||.||=..+++|+++... .|.+-...|  .+.+.. 
T Consensus       988 ~~gt~LL~a-qg~~I~~lplng~~~~K~~ak~~l~~p~~IiV-GidfDC~e~mvyWtDv~g~SI~rasL~G~Ep~ti~n- 1064 (1289)
T KOG1214|consen  988 SVGTFLLYA-QGQQIGYLPLNGTRLQKDAAKTLLSLPGSIIV-GIDFDCRERMVYWTDVAGRSISRASLEGAEPETIVN- 1064 (1289)
T ss_pred             CCcceEEEe-ccceEEEeecCcchhchhhhhceEecccceee-eeecccccceEEEeecCCCccccccccCCCCceeec-
Confidence            4454 4444 5567887764332      11 1223334567 999985445547766543 344444334  444443 


Q ss_pred             cCCCcccCCccEEEcCCC-cEEEEeCCCCCCcccccccccccCCCceEEEEeCCCCeeEEeeccccccceEEEcCCCCEE
Q 026118           88 FNGSQLRFANDVIEASDG-SLYFTVSSTKFTPAEYYLDLVSGEPHGVLLKYDPSTNQTSLVLDGLYFANGVALSEDERFL  166 (243)
Q Consensus        88 ~~~~~~~~~~~l~~d~~G-~l~v~~~~~~~~~~~~~~~~~~~~~~g~v~~~~~~~~~~~~~~~~~~~~~gi~~~~dg~~l  166 (243)
                         +.+..|.+|++|.-+ ++|++|+-               ...-.+..+|.. .+...+.+++-.|.+|++|+=+..|
T Consensus      1065 ---~~L~SPEGiAVDh~~Rn~ywtDS~---------------lD~IevA~LdG~-~rkvLf~tdLVNPR~iv~D~~rgnL 1125 (1289)
T KOG1214|consen 1065 ---SGLISPEGIAVDHIRRNMYWTDSV---------------LDKIEVALLDGS-ERKVLFYTDLVNPRAIVVDPIRGNL 1125 (1289)
T ss_pred             ---ccCCCccceeeeeccceeeeeccc---------------cchhheeecCCc-eeeEEEeecccCcceEEeecccCce
Confidence               235678999999855 69999864               112346666643 2222345788899999999977779


Q ss_pred             EEEEcCC--CeEEEEEeecCCCcceEEeccCCCCCCCceEECCCCC--EEEEEecCC
Q 026118          167 VVCESWK--FRCVKHFLKVSGRTDREIFIDNLPGGPDNVNLARDGS--FWISIIKMD  219 (243)
Q Consensus       167 ~v~~~~~--~~i~~~~~~~~~~~~~~~~~~~~~~~~~~i~~d~~G~--lwv~~~~~~  219 (243)
                      |+++..+  -.|-+-+.++   .+.+++....-++|+||.+|+.-+  .||-....+
T Consensus      1126 YwtDWnRenPkIets~mDG---~NrRilin~DigLPNGLtfdpfs~~LCWvDAGt~r 1179 (1289)
T KOG1214|consen 1126 YWTDWNRENPKIETSSMDG---ENRRILINTDIGLPNGLTFDPFSKLLCWVDAGTKR 1179 (1289)
T ss_pred             eeccccccCCcceeeccCC---ccceEEeecccCCCCCceeCcccceeeEEecCCcc
Confidence            9998754  4566666666   456777766778999999998876  487443333

>PF07995 GSDH: Glucose / Sorbosone dehydrogenase; InterPro: IPR012938 Proteins containing this domain are thought to be glucose/sorbosone dehydrogenases

Probab=98.37  E-value=1.3e-05  Score=66.11  Aligned_cols=157  Identities=17%  Similarity=0.239  Sum_probs=89.0

Q ss_pred             CccccceEEccCCCEEEEEeCCCcEEEEecCC-c-EEEEec--cCCCcccCCccEEEcCC----CcEEEEeCCCCCCccc
Q 026118           49 SQSLLGLTTTKENNVIIVCDSQQGLLKVSEEG-V-TVLVSQ--FNGSQLRFANDVIEASD----GSLYFTVSSTKFTPAE  120 (243)
Q Consensus        49 ~~~~~~i~~~~~g~l~~v~~~~~gl~~~~~~g-~-~~~~~~--~~~~~~~~~~~l~~d~~----G~l~v~~~~~~~~~~~  120 (243)
                      .+|. +|++.|||++ ||+...+.|++++.++ . ..+...  ..........+++++|+    +.+|+.-+..      
T Consensus         2 ~~P~-~~a~~pdG~l-~v~e~~G~i~~~~~~g~~~~~v~~~~~v~~~~~~gllgia~~p~f~~n~~lYv~~t~~------   73 (331)
T PF07995_consen    2 NNPR-SMAFLPDGRL-LVAERSGRIWVVDKDGSLKTPVADLPEVFADGERGLLGIAFHPDFASNGYLYVYYTNA------   73 (331)
T ss_dssp             SSEE-EEEEETTSCE-EEEETTTEEEEEETTTEECEEEEE-TTTBTSTTBSEEEEEE-TTCCCC-EEEEEEEEE------
T ss_pred             CCce-EEEEeCCCcE-EEEeCCceEEEEeCCCcCcceecccccccccccCCcccceeccccCCCCEEEEEEEcc------
Confidence            3577 9999999999 9988755677777556 3 333321  22223456778999985    7888874310      


Q ss_pred             ccccccccCCCceEEEEeCCCC--e---eEEeecc-------ccccceEEEcCCCCEEEEEEc-------------CCCe
Q 026118          121 YYLDLVSGEPHGVLLKYDPSTN--Q---TSLVLDG-------LYFANGVALSEDERFLVVCES-------------WKFR  175 (243)
Q Consensus       121 ~~~~~~~~~~~g~v~~~~~~~~--~---~~~~~~~-------~~~~~gi~~~~dg~~l~v~~~-------------~~~~  175 (243)
                         ..........|.|+..+.+  .   .+.+...       .....+|+|.|||+ ||++.-             ..+.
T Consensus        74 ---~~~~~~~~~~v~r~~~~~~~~~~~~~~~l~~~~p~~~~~~H~g~~l~fgpDG~-LYvs~G~~~~~~~~~~~~~~~G~  149 (331)
T PF07995_consen   74 ---DEDGGDNDNRVVRFTLSDGDGDLSSEEVLVTGLPDTSSGNHNGGGLAFGPDGK-LYVSVGDGGNDDNAQDPNSLRGK  149 (331)
T ss_dssp             ----TSSSSEEEEEEEEEEETTSCEEEEEEEEEEEEES-CSSSS-EEEEEE-TTSE-EEEEEB-TTTGGGGCSTTSSTTE
T ss_pred             ---cCCCCCcceeeEEEeccCCccccccceEEEEEeCCCCCCCCCCccccCCCCCc-EEEEeCCCCCcccccccccccce
Confidence               0000112245766655433  2   2222111       12235699999995 999842             2367


Q ss_pred             EEEEEeecCC-----C-----cceEEeccCCCCCCCceEECCC-CCEEEEEecC
Q 026118          176 CVKHFLKVSG-----R-----TDREIFIDNLPGGPDNVNLARD-GSFWISIIKM  218 (243)
Q Consensus       176 i~~~~~~~~~-----~-----~~~~~~~~~~~~~~~~i~~d~~-G~lwv~~~~~  218 (243)
                      |.|++.++..     .     ...++++.+. .-|-+|++|+. |+||+++++.
T Consensus       150 ilri~~dG~~p~dnP~~~~~~~~~~i~A~Gl-RN~~~~~~d~~tg~l~~~d~G~  202 (331)
T PF07995_consen  150 ILRIDPDGSIPADNPFVGDDGADSEIYAYGL-RNPFGLAFDPNTGRLWAADNGP  202 (331)
T ss_dssp             EEEEETTSSB-TTSTTTTSTTSTTTEEEE---SEEEEEEEETTTTEEEEEEE-S
T ss_pred             EEEecccCcCCCCCccccCCCceEEEEEeCC-CccccEEEECCCCcEEEEccCC
Confidence            8998876520     0     1223333221 12677999999 9999998754

The best characterised of these proteins is soluble glucose dehydrogenase (P13650 from SWISSPROT) from Acinetobacter calcoaceticus, which oxidises glucose to gluconolactone. The enzyme is a calcium-dependent homodimer which uses PQQ as a cofactor [].; GO: 0016901 oxidoreductase activity, acting on the CH-OH group of donors, quinone or similar compound as acceptor, 0048038 quinone binding, 0005975 carbohydrate metabolic process; PDB: 2ISM_A 2WG3_D 3HO5_A 3HO4_A 3HO3_A 2WFT_A 2WG4_B 2WFX_B 1CRU_A 1CQ1_B ....

>PRK01742 tolB translocation protein TolB; Provisional

Probab=98.37  E-value=0.00027  Score=60.51  Aligned_cols=177  Identities=15%  Similarity=0.124  Sum_probs=98.3

Q ss_pred             ccEEEcCCCc-EE-EEeC--CCcEEEEc-cCCceeEecccCCccccceEEccCCCEEEEEeCCC---cEEEEe-cCC-cE
Q 026118           13 EDVSVDGNGV-LY-TATG--DGWIKRMH-PNGTWEDWHQVGSQSLLGLTTTKENNVIIVCDSQQ---GLLKVS-EEG-VT   82 (243)
Q Consensus        13 ~~i~~d~~g~-l~-~~~~--~~~i~~~~-~~g~~~~~~~~~~~~~~~i~~~~~g~l~~v~~~~~---gl~~~~-~~g-~~   82 (243)
                      .++++.+||+ |. ++..  +..|+.++ ..++.+.+....+... .++++|||+.|+++....   .|+.++ .++ .+
T Consensus       207 ~~p~wSPDG~~la~~s~~~~~~~i~i~dl~tg~~~~l~~~~g~~~-~~~wSPDG~~La~~~~~~g~~~Iy~~d~~~~~~~  285 (429)
T PRK01742        207 MSPAWSPDGSKLAYVSFENKKSQLVVHDLRSGARKVVASFRGHNG-APAFSPDGSRLAFASSKDGVLNIYVMGANGGTPS  285 (429)
T ss_pred             ccceEcCCCCEEEEEEecCCCcEEEEEeCCCCceEEEecCCCccC-ceeECCCCCEEEEEEecCCcEEEEEEECCCCCeE
Confidence            4567778884 43 3332  23588888 3454443332223333 678999998645543222   377778 555 44


Q ss_pred             EEEeccCCCcccCCccEEEcCCCc-EEEEeCCCCCCcccccccccccCCCceEEEEeCCCCeeEEeeccccccceEEEcC
Q 026118           83 VLVSQFNGSQLRFANDVIEASDGS-LYFTVSSTKFTPAEYYLDLVSGEPHGVLLKYDPSTNQTSLVLDGLYFANGVALSE  161 (243)
Q Consensus        83 ~~~~~~~~~~~~~~~~l~~d~~G~-l~v~~~~~~~~~~~~~~~~~~~~~~g~v~~~~~~~~~~~~~~~~~~~~~gi~~~~  161 (243)
                      .+...     ........++|||+ ++++...               .....||.++..++..+.+. ...  ..+.++|
T Consensus       286 ~lt~~-----~~~~~~~~wSpDG~~i~f~s~~---------------~g~~~I~~~~~~~~~~~~l~-~~~--~~~~~Sp  342 (429)
T PRK01742        286 QLTSG-----AGNNTEPSWSPDGQSILFTSDR---------------SGSPQVYRMSASGGGASLVG-GRG--YSAQISA  342 (429)
T ss_pred             eeccC-----CCCcCCEEECCCCCEEEEEECC---------------CCCceEEEEECCCCCeEEec-CCC--CCccCCC
Confidence            43221     11234668999997 5554221               12247899988766555542 212  3467999


Q ss_pred             CCCEEEEEEcCCCeEEEEEeecCCCcceEEeccCCCCCCCceEECCCCCEEE-EEecCCc
Q 026118          162 DERFLVVCESWKFRCVKHFLKVSGRTDREIFIDNLPGGPDNVNLARDGSFWI-SIIKMDP  220 (243)
Q Consensus       162 dg~~l~v~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~i~~d~~G~lwv-~~~~~~~  220 (243)
                      ||++++++..  ..++++|..++.   .+.+...  .......++++|++.+ +...++.
T Consensus       343 DG~~ia~~~~--~~i~~~Dl~~g~---~~~lt~~--~~~~~~~~sPdG~~i~~~s~~g~~  395 (429)
T PRK01742        343 DGKTLVMING--DNVVKQDLTSGS---TEVLSST--FLDESPSISPNGIMIIYSSTQGLG  395 (429)
T ss_pred             CCCEEEEEcC--CCEEEEECCCCC---eEEecCC--CCCCCceECCCCCEEEEEEcCCCc
Confidence            9998877743  568888876532   2222111  1123466788887443 3444433

>TIGR03606 non_repeat_PQQ dehydrogenase, PQQ-dependent, s-GDH family

Probab=98.36  E-value=7.7e-05  Score=63.41  Aligned_cols=164  Identities=16%  Similarity=0.151  Sum_probs=91.5

Q ss_pred             EecccCCccccceEEccCCCEEEEEeCC-CcEEEEec-CC-cEEEEe---ccCCCcccCCccEEEcCC-------CcEEE
Q 026118           43 DWHQVGSQSLLGLTTTKENNVIIVCDSQ-QGLLKVSE-EG-VTVLVS---QFNGSQLRFANDVIEASD-------GSLYF  109 (243)
Q Consensus        43 ~~~~~~~~~~~~i~~~~~g~l~~v~~~~-~gl~~~~~-~g-~~~~~~---~~~~~~~~~~~~l~~d~~-------G~l~v  109 (243)
                      .+......|. +|++.+||++ ||+... +.|+++++ ++ .+.+..   .........+.+|+++|+       +.+|+
T Consensus        24 ~va~GL~~Pw-~maflPDG~l-lVtER~~G~I~~v~~~~~~~~~~~~l~~v~~~~ge~GLlglal~PdF~~~~~n~~lYv  101 (454)
T TIGR03606        24 VLLSGLNKPW-ALLWGPDNQL-WVTERATGKILRVNPETGEVKVVFTLPEIVNDAQHNGLLGLALHPDFMQEKGNPYVYI  101 (454)
T ss_pred             EEECCCCCce-EEEEcCCCeE-EEEEecCCEEEEEeCCCCceeeeecCCceeccCCCCceeeEEECCCccccCCCcEEEE
Confidence            3444446788 9999999998 888763 56888873 34 322221   111112356678999876       35888


Q ss_pred             EeCCCCCCcccccccccccCCCceEEEEeCC--CCe---eEEeeccc-----cccceEEEcCCCCEEEEEEcCC------
Q 026118          110 TVSSTKFTPAEYYLDLVSGEPHGVLLKYDPS--TNQ---TSLVLDGL-----YFANGVALSEDERFLVVCESWK------  173 (243)
Q Consensus       110 ~~~~~~~~~~~~~~~~~~~~~~g~v~~~~~~--~~~---~~~~~~~~-----~~~~gi~~~~dg~~l~v~~~~~------  173 (243)
                      +-+...-+        ........|.|+..+  +..   .+.+....     ..-..|+|+|||+ ||++.-..      
T Consensus       102 syt~~~~~--------~~~~~~~~I~R~~l~~~~~~l~~~~~Il~~lP~~~~H~GgrI~FgPDG~-LYVs~GD~g~~~~~  172 (454)
T TIGR03606       102 SYTYKNGD--------KELPNHTKIVRYTYDKSTQTLEKPVDLLAGLPAGNDHNGGRLVFGPDGK-IYYTIGEQGRNQGA  172 (454)
T ss_pred             EEeccCCC--------CCccCCcEEEEEEecCCCCccccceEEEecCCCCCCcCCceEEECCCCc-EEEEECCCCCCCcc
Confidence            73210000        000013467776543  111   12222221     1234699999998 99963221      


Q ss_pred             --------------------------CeEEEEEeecCC-----C---cceEEeccCCCCCCCceEECCCCCEEEEEecC
Q 026118          174 --------------------------FRCVKHFLKVSG-----R---TDREIFIDNLPGGPDNVNLARDGSFWISIIKM  218 (243)
Q Consensus       174 --------------------------~~i~~~~~~~~~-----~---~~~~~~~~~~~~~~~~i~~d~~G~lwv~~~~~  218 (243)
                                                +.|+|++.++..     +   ...+++..+. .-|-+|++|++|+||++.+..
T Consensus       173 n~~~~~~aQ~~~~~~~~~~~d~~~~~GkILRin~DGsiP~dNPf~~g~~~eIyA~G~-RNp~Gla~dp~G~Lw~~e~Gp  250 (454)
T TIGR03606       173 NFFLPNQAQHTPTQQELNGKDYHAYMGKVLRLNLDGSIPKDNPSINGVVSHIFTYGH-RNPQGLAFTPDGTLYASEQGP  250 (454)
T ss_pred             cccCcchhccccccccccccCcccCceEEEEEcCCCCCCCCCCccCCCcceEEEEec-cccceeEECCCCCEEEEecCC
Confidence                                      257888776521     0   0123443211 137789999999999988654

PQQ, or pyrroloquinoline-quinone, serves as a cofactor for a number of sugar and alcohol dehydrogenases in a limited number of bacterial species. Most characterized PQQ-dependent enzymes have multiple repeats of a sequence region described by pfam01011 (PQQ enzyme repeat), but this protein family in unusual in lacking that repeat. Below the noise cutoff are related proteins mostly from species that lack PQQ biosynthesis.

>PRK04922 tolB translocation protein TolB; Provisional

Probab=98.35  E-value=0.00014  Score=62.23  Aligned_cols=155  Identities=11%  Similarity=0.112  Sum_probs=87.6

Q ss_pred             cEEEEccCCc-eeEecccCCccccceEEccCCCEEEEEeCCC---cEEEEe-cCC-cEEEEeccCCCcccCCccEEEcCC
Q 026118           31 WIKRMHPNGT-WEDWHQVGSQSLLGLTTTKENNVIIVCDSQQ---GLLKVS-EEG-VTVLVSQFNGSQLRFANDVIEASD  104 (243)
Q Consensus        31 ~i~~~~~~g~-~~~~~~~~~~~~~~i~~~~~g~l~~v~~~~~---gl~~~~-~~g-~~~~~~~~~~~~~~~~~~l~~d~~  104 (243)
                      .|+.+|.++. ...+... ..+..+.++++||+.++++....   .|+.++ .++ .+.+.. ..+    ....+.++||
T Consensus       185 ~l~i~D~~g~~~~~lt~~-~~~v~~p~wSpDg~~la~~s~~~~~~~l~~~dl~~g~~~~l~~-~~g----~~~~~~~SpD  258 (433)
T PRK04922        185 ALQVADSDGYNPQTILRS-AEPILSPAWSPDGKKLAYVSFERGRSAIYVQDLATGQRELVAS-FRG----INGAPSFSPD  258 (433)
T ss_pred             EEEEECCCCCCceEeecC-CCccccccCCCCCCEEEEEecCCCCcEEEEEECCCCCEEEecc-CCC----CccCceECCC
Confidence            3555664443 2222221 22232678889998545444322   388888 566 444332 111    1235688999


Q ss_pred             Cc-EEEEeCCCCCCcccccccccccCCCceEEEEeCCCCeeEEeeccccccceEEEcCCCCEEEEEEcCC--CeEEEEEe
Q 026118          105 GS-LYFTVSSTKFTPAEYYLDLVSGEPHGVLLKYDPSTNQTSLVLDGLYFANGVALSEDERFLVVCESWK--FRCVKHFL  181 (243)
Q Consensus       105 G~-l~v~~~~~~~~~~~~~~~~~~~~~~g~v~~~~~~~~~~~~~~~~~~~~~gi~~~~dg~~l~v~~~~~--~~i~~~~~  181 (243)
                      |+ ++++.+.               .....||.++.++++.+++...........|++||+.|+++....  ..|+.++.
T Consensus       259 G~~l~~~~s~---------------~g~~~Iy~~d~~~g~~~~lt~~~~~~~~~~~spDG~~l~f~sd~~g~~~iy~~dl  323 (433)
T PRK04922        259 GRRLALTLSR---------------DGNPEIYVMDLGSRQLTRLTNHFGIDTEPTWAPDGKSIYFTSDRGGRPQIYRVAA  323 (433)
T ss_pred             CCEEEEEEeC---------------CCCceEEEEECCCCCeEECccCCCCccceEECCCCCEEEEEECCCCCceEEEEEC
Confidence            96 5554321               122469999999888777654444445689999999887765332  45888877


Q ss_pred             ecCCCcceEEeccCCCCCCCceEECCCCC
Q 026118          182 KVSGRTDREIFIDNLPGGPDNVNLARDGS  210 (243)
Q Consensus       182 ~~~~~~~~~~~~~~~~~~~~~i~~d~~G~  210 (243)
                      +++..   +.+.. ........+++++|+
T Consensus       324 ~~g~~---~~lt~-~g~~~~~~~~SpDG~  348 (433)
T PRK04922        324 SGGSA---ERLTF-QGNYNARASVSPDGK  348 (433)
T ss_pred             CCCCe---EEeec-CCCCccCEEECCCCC
Confidence            65322   22211 112233467777776

>PF07433 DUF1513: Protein of unknown function (DUF1513); InterPro: IPR008311 There are currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function

Probab=98.35  E-value=0.00019  Score=57.48  Aligned_cols=158  Identities=14%  Similarity=0.149  Sum_probs=95.2

Q ss_pred             EEEcCCCc-EEEEeC-----CCcEEEEccCC---ceeEecccCCccccceEEccCCCEEEEEeCC---------------
Q 026118           15 VSVDGNGV-LYTATG-----DGWIKRMHPNG---TWEDWHQVGSQSLLGLTTTKENNVIIVCDSQ---------------   70 (243)
Q Consensus        15 i~~d~~g~-l~~~~~-----~~~i~~~~~~g---~~~~~~~~~~~~~~~i~~~~~g~l~~v~~~~---------------   70 (243)
                      -++++||+ ||++.+     .|.|-.+|...   ++..|......|. -|.+.+||+.|.|++.+               
T Consensus        56 g~fs~dG~~LytTEnd~~~g~G~IgVyd~~~~~~ri~E~~s~GIGPH-el~l~pDG~tLvVANGGI~Thpd~GR~kLNl~  134 (305)
T PF07433_consen   56 GVFSPDGRLLYTTENDYETGRGVIGVYDAARGYRRIGEFPSHGIGPH-ELLLMPDGETLVVANGGIETHPDSGRAKLNLD  134 (305)
T ss_pred             EEEcCCCCEEEEeccccCCCcEEEEEEECcCCcEEEeEecCCCcChh-hEEEcCCCCEEEEEcCCCccCcccCceecChh
Confidence            46677885 555542     35677777443   3344555455677 88999999655888742               


Q ss_pred             ---CcEEEEe-cCC-cEEEEeccCCCcccCCccEEEcCCCcEEEEeCCCCCCcccccccccccCCCceEEEEeCCCCeeE
Q 026118           71 ---QGLLKVS-EEG-VTVLVSQFNGSQLRFANDVIEASDGSLYFTVSSTKFTPAEYYLDLVSGEPHGVLLKYDPSTNQTS  145 (243)
Q Consensus        71 ---~gl~~~~-~~g-~~~~~~~~~~~~~~~~~~l~~d~~G~l~v~~~~~~~~~~~~~~~~~~~~~~g~v~~~~~~~~~~~  145 (243)
                         ..|..+| .+| .......+......++..|+++++|.+|++...   .-..       ...-.-|...... +.++
T Consensus       135 tM~psL~~ld~~sG~ll~q~~Lp~~~~~lSiRHLa~~~~G~V~~a~Q~---qg~~-------~~~~PLva~~~~g-~~~~  203 (305)
T PF07433_consen  135 TMQPSLVYLDARSGALLEQVELPPDLHQLSIRHLAVDGDGTVAFAMQY---QGDP-------GDAPPLVALHRRG-GALR  203 (305)
T ss_pred             hcCCceEEEecCCCceeeeeecCccccccceeeEEecCCCcEEEEEec---CCCC-------CccCCeEEEEcCC-Ccce
Confidence               1366776 666 222222222233457889999999999998532   1000       0111235555554 3333


Q ss_pred             Eeec--c-----ccccceEEEcCCCCEEEEEEcCCCeEEEEEeecC
Q 026118          146 LVLD--G-----LYFANGVALSEDERFLVVCESWKFRCVKHFLKVS  184 (243)
Q Consensus       146 ~~~~--~-----~~~~~gi~~~~dg~~l~v~~~~~~~i~~~~~~~~  184 (243)
                      .+.-  .     ..+.-+|+++++|+.+.++....+.+..+|...+
T Consensus       204 ~~~~p~~~~~~l~~Y~gSIa~~~~g~~ia~tsPrGg~~~~~d~~tg  249 (305)
T PF07433_consen  204 LLPAPEEQWRRLNGYIGSIAADRDGRLIAVTSPRGGRVAVWDAATG  249 (305)
T ss_pred             eccCChHHHHhhCCceEEEEEeCCCCEEEEECCCCCEEEEEECCCC
Confidence            3321  1     1345679999999988888888888999987654

>PRK03629 tolB translocation protein TolB; Provisional

Probab=98.30  E-value=0.00062  Score=58.30  Aligned_cols=155  Identities=17%  Similarity=0.135  Sum_probs=88.1

Q ss_pred             cEEEEccCCc-eeEecccCCccccceEEccCCCEEEEEeCC---CcEEEEe-cCC-cEEEEeccCCCcccCCccEEEcCC
Q 026118           31 WIKRMHPNGT-WEDWHQVGSQSLLGLTTTKENNVIIVCDSQ---QGLLKVS-EEG-VTVLVSQFNGSQLRFANDVIEASD  104 (243)
Q Consensus        31 ~i~~~~~~g~-~~~~~~~~~~~~~~i~~~~~g~l~~v~~~~---~gl~~~~-~~g-~~~~~~~~~~~~~~~~~~l~~d~~  104 (243)
                      .|+..|.+|. ...+.. ...+.....++|||+.+.+....   ..++.++ .+| .+.+.. ..+    ....++++||
T Consensus       180 ~l~~~d~dg~~~~~lt~-~~~~~~~p~wSPDG~~la~~s~~~g~~~i~i~dl~~G~~~~l~~-~~~----~~~~~~~SPD  253 (429)
T PRK03629        180 ELRVSDYDGYNQFVVHR-SPQPLMSPAWSPDGSKLAYVTFESGRSALVIQTLANGAVRQVAS-FPR----HNGAPAFSPD  253 (429)
T ss_pred             eEEEEcCCCCCCEEeec-CCCceeeeEEcCCCCEEEEEEecCCCcEEEEEECCCCCeEEccC-CCC----CcCCeEECCC
Confidence            4666664443 222222 12233378899999853333222   3477777 556 444332 111    2235689999


Q ss_pred             Cc-EEEEeCCCCCCcccccccccccCCCceEEEEeCCCCeeEEeeccccccceEEEcCCCCEEEEEEcC--CCeEEEEEe
Q 026118          105 GS-LYFTVSSTKFTPAEYYLDLVSGEPHGVLLKYDPSTNQTSLVLDGLYFANGVALSEDERFLVVCESW--KFRCVKHFL  181 (243)
Q Consensus       105 G~-l~v~~~~~~~~~~~~~~~~~~~~~~g~v~~~~~~~~~~~~~~~~~~~~~gi~~~~dg~~l~v~~~~--~~~i~~~~~  181 (243)
                      |+ |.++.+.               .....||.+|.++++.+++...........|+|||+.|+++...  ...|++++.
T Consensus       254 G~~La~~~~~---------------~g~~~I~~~d~~tg~~~~lt~~~~~~~~~~wSPDG~~I~f~s~~~g~~~Iy~~d~  318 (429)
T PRK03629        254 GSKLAFALSK---------------TGSLNLYVMDLASGQIRQVTDGRSNNTEPTWFPDSQNLAYTSDQAGRPQVYKVNI  318 (429)
T ss_pred             CCEEEEEEcC---------------CCCcEEEEEECCCCCEEEccCCCCCcCceEECCCCCEEEEEeCCCCCceEEEEEC
Confidence            97 5554221               11236999999988888776554455678999999988665432  247888887


Q ss_pred             ecCCCcceEEeccCCCCCCCceEECCCCC
Q 026118          182 KVSGRTDREIFIDNLPGGPDNVNLARDGS  210 (243)
Q Consensus       182 ~~~~~~~~~~~~~~~~~~~~~i~~d~~G~  210 (243)
                      ++...   +.+. .........+++++|+
T Consensus       319 ~~g~~---~~lt-~~~~~~~~~~~SpDG~  343 (429)
T PRK03629        319 NGGAP---QRIT-WEGSQNQDADVSSDGK  343 (429)
T ss_pred             CCCCe---EEee-cCCCCccCEEECCCCC
Confidence            65322   2221 1112233466677776

>PRK02888 nitrous-oxide reductase; Validated

Probab=98.30  E-value=0.00011  Score=64.11  Aligned_cols=172  Identities=10%  Similarity=0.048  Sum_probs=102.0

Q ss_pred             CCCc-EEEEe-CCCcEEEEccC-CceeEecccCCccccceEEccCCCEEEEEeCC----CcEEEEe-cCC-cEEEEeccC
Q 026118           19 GNGV-LYTAT-GDGWIKRMHPN-GTWEDWHQVGSQSLLGLTTTKENNVIIVCDSQ----QGLLKVS-EEG-VTVLVSQFN   89 (243)
Q Consensus        19 ~~g~-l~~~~-~~~~i~~~~~~-g~~~~~~~~~~~~~~~i~~~~~g~l~~v~~~~----~gl~~~~-~~g-~~~~~~~~~   89 (243)
                      +||. |+... ..+.+..+|.+ -++..-....++|. .+.++++|+++|++...    .-+..++ .+. ...... +.
T Consensus       202 nDGk~l~~~~ey~~~vSvID~etmeV~~qV~Vdgnpd-~v~~spdGk~afvTsyNsE~G~tl~em~a~e~d~~vvfn-i~  279 (635)
T PRK02888        202 NDGKDLDDPKKYRSLFTAVDAETMEVAWQVMVDGNLD-NVDTDYDGKYAFSTCYNSEEGVTLAEMMAAERDWVVVFN-IA  279 (635)
T ss_pred             CCCCEeecccceeEEEEEEECccceEEEEEEeCCCcc-cceECCCCCEEEEeccCcccCcceeeeccccCceEEEEc-hH
Confidence            3553 33332 34456666633 22222223346777 88999999998888632    1244444 222 211111 11


Q ss_pred             CCcccCCccEEEcCCCc-EEEEeCCCCCCcccccccccccCCCceEEEEeCCC-----CeeEEeeccccccceEEEcCCC
Q 026118           90 GSQLRFANDVIEASDGS-LYFTVSSTKFTPAEYYLDLVSGEPHGVLLKYDPST-----NQTSLVLDGLYFANGVALSEDE  163 (243)
Q Consensus        90 ~~~~~~~~~l~~d~~G~-l~v~~~~~~~~~~~~~~~~~~~~~~g~v~~~~~~~-----~~~~~~~~~~~~~~gi~~~~dg  163 (243)
                      .     ..  +..++|+ .|+.                    .+.|..+|..+     .++.........|.|+.++|||
T Consensus       280 ~-----ie--a~vkdGK~~~V~--------------------gn~V~VID~~t~~~~~~~v~~yIPVGKsPHGV~vSPDG  332 (635)
T PRK02888        280 R-----IE--EAVKAGKFKTIG--------------------GSKVPVVDGRKAANAGSALTRYVPVPKNPHGVNTSPDG  332 (635)
T ss_pred             H-----HH--HhhhCCCEEEEC--------------------CCEEEEEECCccccCCcceEEEEECCCCccceEECCCC
Confidence            0     00  2234565 4442                    13688899886     3445555566789999999999


Q ss_pred             CEEEEEEcCCCeEEEEEeecC------CCcceE-Eecc-CCCCCCCceEECCCCCEEEEEecCC
Q 026118          164 RFLVVCESWKFRCVKHFLKVS------GRTDRE-IFID-NLPGGPDNVNLARDGSFWISIIKMD  219 (243)
Q Consensus       164 ~~l~v~~~~~~~i~~~~~~~~------~~~~~~-~~~~-~~~~~~~~i~~d~~G~lwv~~~~~~  219 (243)
                      +++|+++..++.+..||...-      .+.-.. +... ...-.|--.++|.+|+.|.+.+-.+
T Consensus       333 kylyVanklS~tVSVIDv~k~k~~~~~~~~~~~~vvaevevGlGPLHTaFDg~G~aytslf~ds  396 (635)
T PRK02888        333 KYFIANGKLSPTVTVIDVRKLDDLFDGKIKPRDAVVAEPELGLGPLHTAFDGRGNAYTTLFLDS  396 (635)
T ss_pred             CEEEEeCCCCCcEEEEEChhhhhhhhccCCccceEEEeeccCCCcceEEECCCCCEEEeEeecc
Confidence            999999999999999998642      111111 1111 1223577899999999999887655

>PRK04792 tolB translocation protein TolB; Provisional

Probab=98.30  E-value=0.00061  Score=58.66  Aligned_cols=138  Identities=11%  Similarity=0.046  Sum_probs=81.4

Q ss_pred             ceEEccCCCEEEEEeCC---CcEEEEe-cCC-cEEEEeccCCCcccCCccEEEcCCCc-EEEEeCCCCCCcccccccccc
Q 026118           54 GLTTTKENNVIIVCDSQ---QGLLKVS-EEG-VTVLVSQFNGSQLRFANDVIEASDGS-LYFTVSSTKFTPAEYYLDLVS  127 (243)
Q Consensus        54 ~i~~~~~g~l~~v~~~~---~gl~~~~-~~g-~~~~~~~~~~~~~~~~~~l~~d~~G~-l~v~~~~~~~~~~~~~~~~~~  127 (243)
                      ...++|||+.++++...   ..|+.++ .++ .+.+.. ..+    .....+++|||+ ++++.+.              
T Consensus       222 ~p~wSPDG~~La~~s~~~g~~~L~~~dl~tg~~~~lt~-~~g----~~~~~~wSPDG~~La~~~~~--------------  282 (448)
T PRK04792        222 SPAWSPDGRKLAYVSFENRKAEIFVQDIYTQVREKVTS-FPG----INGAPRFSPDGKKLALVLSK--------------  282 (448)
T ss_pred             CceECCCCCEEEEEEecCCCcEEEEEECCCCCeEEecC-CCC----CcCCeeECCCCCEEEEEEeC--------------
Confidence            67889999854443322   2488888 556 444332 111    122568899997 5554221              


Q ss_pred             cCCCceEEEEeCCCCeeEEeeccccccceEEEcCCCCEEEEEEcC--CCeEEEEEeecCCCcceEEeccCCCCCCCceEE
Q 026118          128 GEPHGVLLKYDPSTNQTSLVLDGLYFANGVALSEDERFLVVCESW--KFRCVKHFLKVSGRTDREIFIDNLPGGPDNVNL  205 (243)
Q Consensus       128 ~~~~g~v~~~~~~~~~~~~~~~~~~~~~gi~~~~dg~~l~v~~~~--~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~i~~  205 (243)
                       .....||.+|.++++.+++..........+|+|||++|+++...  ...|++++.+++..   +.+.. ........++
T Consensus       283 -~g~~~Iy~~dl~tg~~~~lt~~~~~~~~p~wSpDG~~I~f~s~~~g~~~Iy~~dl~~g~~---~~Lt~-~g~~~~~~~~  357 (448)
T PRK04792        283 -DGQPEIYVVDIATKALTRITRHRAIDTEPSWHPDGKSLIFTSERGGKPQIYRVNLASGKV---SRLTF-EGEQNLGGSI  357 (448)
T ss_pred             -CCCeEEEEEECCCCCeEECccCCCCccceEECCCCCEEEEEECCCCCceEEEEECCCCCE---EEEec-CCCCCcCeeE
Confidence             12246999999988887776544455668999999988776543  35688888765322   21111 1112223566


Q ss_pred             CCCCC-EEEEE
Q 026118          206 ARDGS-FWISI  215 (243)
Q Consensus       206 d~~G~-lwv~~  215 (243)
                      +++|+ |++..
T Consensus       358 SpDG~~l~~~~  368 (448)
T PRK04792        358 TPDGRSMIMVN  368 (448)
T ss_pred             CCCCCEEEEEE
Confidence            77776 44433

>PF06977 SdiA-regulated: SdiA-regulated; InterPro: IPR009722 This entry represents a conserved region approximately 100 residues long within a number of hypothetical bacterial proteins that may be regulated by SdiA, a member of the LuxR family of transcriptional regulators []

Probab=98.25  E-value=0.00016  Score=56.72  Aligned_cols=151  Identities=16%  Similarity=0.127  Sum_probs=82.8

Q ss_pred             ccCCcccEEEcCCCcEEEEe-CCCcEEEEcc--CCc------eeEecccC---Cc--cccceEEccCCCEEEEEeCC--C
Q 026118            8 IVNHPEDVSVDGNGVLYTAT-GDGWIKRMHP--NGT------WEDWHQVG---SQ--SLLGLTTTKENNVIIVCDSQ--Q   71 (243)
Q Consensus         8 ~~~~p~~i~~d~~g~l~~~~-~~~~i~~~~~--~g~------~~~~~~~~---~~--~~~~i~~~~~g~l~~v~~~~--~   71 (243)
                      .+..||+|++-.++.+.++. ..+.++.+..  +++      +..+....   .+  .. |+++|+.++.||++-..  .
T Consensus        63 g~~D~EgI~y~g~~~~vl~~Er~~~L~~~~~~~~~~~~~~~~~~~~~l~~~~~~N~G~E-Gla~D~~~~~L~v~kE~~P~  141 (248)
T PF06977_consen   63 GFGDYEGITYLGNGRYVLSEERDQRLYIFTIDDDTTSLDRADVQKISLGFPNKGNKGFE-GLAYDPKTNRLFVAKERKPK  141 (248)
T ss_dssp             S-SSEEEEEE-STTEEEEEETTTTEEEEEEE----TT--EEEEEEEE---S---SS--E-EEEEETTTTEEEEEEESSSE
T ss_pred             CCCCceeEEEECCCEEEEEEcCCCcEEEEEEeccccccchhhceEEecccccCCCcceE-EEEEcCCCCEEEEEeCCCCh
Confidence            47789999999888877777 4677877762  221      12222111   11  24 89999876655777644  2


Q ss_pred             cEEEEec--CC--cEEEEe-c-c-CCCcccCCccEEEcCC-CcEEEEeCCCCCCcccccccccccCCCceEEEEeCCCCe
Q 026118           72 GLLKVSE--EG--VTVLVS-Q-F-NGSQLRFANDVIEASD-GSLYFTVSSTKFTPAEYYLDLVSGEPHGVLLKYDPSTNQ  143 (243)
Q Consensus        72 gl~~~~~--~g--~~~~~~-~-~-~~~~~~~~~~l~~d~~-G~l~v~~~~~~~~~~~~~~~~~~~~~~g~v~~~~~~~~~  143 (243)
                      +|+.++.  ..  ...... . . .......+.++.++|. |++|+-..                 .+..|..+|.+ |+
T Consensus       142 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~S~l~~~p~t~~lliLS~-----------------es~~l~~~d~~-G~  203 (248)
T PF06977_consen  142 RLYEVNGFPGGFDLFVSDDQDLDDDKLFVRDLSGLSYDPRTGHLLILSD-----------------ESRLLLELDRQ-GR  203 (248)
T ss_dssp             EEEEEESTT-SS--EEEE-HHHH-HT--SS---EEEEETTTTEEEEEET-----------------TTTEEEEE-TT---
T ss_pred             hhEEEccccCccceeeccccccccccceeccccceEEcCCCCeEEEEEC-----------------CCCeEEEECCC-CC
Confidence            5777762  22  222211 1 1 1222345778999984 78888632                 23578999987 65


Q ss_pred             eEEe---ec-------cccccceEEEcCCCCEEEEEEcCCCeEEEE
Q 026118          144 TSLV---LD-------GLYFANGVALSEDERFLVVCESWKFRCVKH  179 (243)
Q Consensus       144 ~~~~---~~-------~~~~~~gi~~~~dg~~l~v~~~~~~~i~~~  179 (243)
                      +...   ..       ....|-||+++++|+ |||++. .+..++|
T Consensus       204 ~~~~~~L~~g~~gl~~~~~QpEGIa~d~~G~-LYIvsE-pNlfy~f  247 (248)
T PF06977_consen  204 VVSSLSLDRGFHGLSKDIPQPEGIAFDPDGN-LYIVSE-PNLFYRF  247 (248)
T ss_dssp             EEEEEE-STTGGG-SS---SEEEEEE-TT---EEEEET-TTEEEEE
T ss_pred             EEEEEEeCCcccCcccccCCccEEEECCCCC-EEEEcC-CceEEEe
Confidence            4432   12       235688999999998 999975 5677776

Some proteins contain the IPR001258 from INTERPRO repeat.; PDB: 3QQZ_A.

>COG2133 Glucose/sorbosone dehydrogenases [Carbohydrate transport and metabolism]

Probab=98.24  E-value=6.6e-05  Score=62.43  Aligned_cols=163  Identities=16%  Similarity=0.169  Sum_probs=88.2

Q ss_pred             ceecccccCCcccEEEcCCCcEEEEeCC-CcEEEEccCCce--------eEeccc----------------CCccccceE
Q 026118            2 IKLGEGIVNHPEDVSVDGNGVLYTATGD-GWIKRMHPNGTW--------EDWHQV----------------GSQSLLGLT   56 (243)
Q Consensus         2 ~~~~~g~~~~p~~i~~d~~g~l~~~~~~-~~i~~~~~~g~~--------~~~~~~----------------~~~~~~~i~   56 (243)
                      +.+++| +..|.+++..++|.+.+.... +.+..+...+..        ......                ...+. +++
T Consensus        60 ~~~a~g-Le~p~~~~~lP~G~~~v~er~~G~l~~i~~g~~~~~~~~~~~~~~~~~~~Gll~~al~~~fa~~~~~~~-~~a  137 (399)
T COG2133          60 EVVAQG-LEHPWGLARLPDGVLLVTERPTGRLRLISDGGSASPPVSTVPIVLLRGQGGLLDIALSPDFAQGRLVYF-GIS  137 (399)
T ss_pred             cccccc-ccCchhheecCCceEEEEccCCccEEEecCCCcccccccccceEEeccCCCccceEecccccccceeee-EEE
Confidence            345666 889999999999966666543 666555422111        011100                01122 333


Q ss_pred             EccCCCEEEEEeCCCcEEEEe-cCC----cEEEEeccCCCcccCCccEEEcCCCcEEEEeCCCCCCcccccccccccCCC
Q 026118           57 TTKENNVIIVCDSQQGLLKVS-EEG----VTVLVSQFNGSQLRFANDVIEASDGSLYFTVSSTKFTPAEYYLDLVSGEPH  131 (243)
Q Consensus        57 ~~~~g~l~~v~~~~~gl~~~~-~~g----~~~~~~~~~~~~~~~~~~l~~d~~G~l~v~~~~~~~~~~~~~~~~~~~~~~  131 (243)
                      + ..+.+ |+++. ..+.+++ .+.    .+.+....++..+..-..|+++|||+||++.-+.......++  .  ....
T Consensus       138 ~-~~~~~-~~~n~-~~~~~~~~g~~~l~~~~~i~~~lP~~~~H~g~~l~f~pDG~Lyvs~G~~~~~~~aq~--~--~~~~  210 (399)
T COG2133         138 E-PGGGL-YVANR-VAIGRLPGGDTKLSEPKVIFRGIPKGGHHFGGRLVFGPDGKLYVTTGSNGDPALAQD--N--VSLA  210 (399)
T ss_pred             e-ecCCc-eEEEE-EEEEEcCCCccccccccEEeecCCCCCCcCcccEEECCCCcEEEEeCCCCCcccccC--c--cccc
Confidence            3 22333 45442 3456665 211    233443333333455667999999999998644211111110  0  1122


Q ss_pred             ceEEE--------EeCCCCeeEEeeccccccceEEEcCCCCEEEEEEcCC
Q 026118          132 GVLLK--------YDPSTNQTSLVLDGLYFANGVALSEDERFLVVCESWK  173 (243)
Q Consensus       132 g~v~~--------~~~~~~~~~~~~~~~~~~~gi~~~~dg~~l~v~~~~~  173 (243)
                      +.+++        .|+.+...+....++..|+|++++|....||+++-..
T Consensus       211 Gk~~r~~~a~~~~~d~p~~~~~i~s~G~RN~qGl~w~P~tg~Lw~~e~g~  260 (399)
T COG2133         211 GKVLRIDRAGIIPADNPFPNSEIWSYGHRNPQGLAWHPVTGALWTTEHGP  260 (399)
T ss_pred             cceeeeccCcccccCCCCCCcceEEeccCCccceeecCCCCcEEEEecCC
Confidence            33444        4444444455566778899999999844499998665

>PRK00178 tolB translocation protein TolB; Provisional

Probab=98.24  E-value=0.00077  Score=57.70  Aligned_cols=132  Identities=19%  Similarity=0.187  Sum_probs=78.1

Q ss_pred             EEEEccCCc-eeEecccCCccccceEEccCCCEE-EEEeCC--CcEEEEe-cCC-cEEEEeccCCCcccCCccEEEcCCC
Q 026118           32 IKRMHPNGT-WEDWHQVGSQSLLGLTTTKENNVI-IVCDSQ--QGLLKVS-EEG-VTVLVSQFNGSQLRFANDVIEASDG  105 (243)
Q Consensus        32 i~~~~~~g~-~~~~~~~~~~~~~~i~~~~~g~l~-~v~~~~--~gl~~~~-~~g-~~~~~~~~~~~~~~~~~~l~~d~~G  105 (243)
                      |+..|.+|. ...+... ..+.....++|||+.+ |+....  ..|+.++ .+| .+.+.. ..+    ......++|||
T Consensus       181 l~~~d~~g~~~~~l~~~-~~~~~~p~wSpDG~~la~~s~~~~~~~l~~~~l~~g~~~~l~~-~~g----~~~~~~~SpDG  254 (430)
T PRK00178        181 LQRSDYDGARAVTLLQS-REPILSPRWSPDGKRIAYVSFEQKRPRIFVQNLDTGRREQITN-FEG----LNGAPAWSPDG  254 (430)
T ss_pred             EEEECCCCCCceEEecC-CCceeeeeECCCCCEEEEEEcCCCCCEEEEEECCCCCEEEccC-CCC----CcCCeEECCCC
Confidence            555565443 2222222 2232267888999854 443322  2488888 666 444322 111    12246889998


Q ss_pred             c-EEEEeCCCCCCcccccccccccCCCceEEEEeCCCCeeEEeeccccccceEEEcCCCCEEEEEEcC--CCeEEEEEee
Q 026118          106 S-LYFTVSSTKFTPAEYYLDLVSGEPHGVLLKYDPSTNQTSLVLDGLYFANGVALSEDERFLVVCESW--KFRCVKHFLK  182 (243)
Q Consensus       106 ~-l~v~~~~~~~~~~~~~~~~~~~~~~g~v~~~~~~~~~~~~~~~~~~~~~gi~~~~dg~~l~v~~~~--~~~i~~~~~~  182 (243)
                      + ++++.+.               .....||.+|.++++.+++...........|+|||+.++++...  ...|+.++..
T Consensus       255 ~~la~~~~~---------------~g~~~Iy~~d~~~~~~~~lt~~~~~~~~~~~spDg~~i~f~s~~~g~~~iy~~d~~  319 (430)
T PRK00178        255 SKLAFVLSK---------------DGNPEIYVMDLASRQLSRVTNHPAIDTEPFWGKDGRTLYFTSDRGGKPQIYKVNVN  319 (430)
T ss_pred             CEEEEEEcc---------------CCCceEEEEECCCCCeEEcccCCCCcCCeEECCCCCEEEEEECCCCCceEEEEECC
Confidence            6 5554322               11247999999988877765544445567899999988776533  3468888876


Q ss_pred             cC
Q 026118          183 VS  184 (243)
Q Consensus       183 ~~  184 (243)
                      ++
T Consensus       320 ~g  321 (430)
T PRK00178        320 GG  321 (430)
T ss_pred             CC
Confidence            53

>KOG0291 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]

Probab=98.23  E-value=0.00023  Score=62.41  Aligned_cols=187  Identities=11%  Similarity=0.050  Sum_probs=110.3

Q ss_pred             ccEEEcCCCcEE-EEeCCCcEEEEc-c-CCceeEecccCCccccceEEccCCCEEEEEeCC-CcEEEEe-cCC-cEEEEe
Q 026118           13 EDVSVDGNGVLY-TATGDGWIKRMH-P-NGTWEDWHQVGSQSLLGLTTTKENNVIIVCDSQ-QGLLKVS-EEG-VTVLVS   86 (243)
Q Consensus        13 ~~i~~d~~g~l~-~~~~~~~i~~~~-~-~g~~~~~~~~~~~~~~~i~~~~~g~l~~v~~~~-~gl~~~~-~~g-~~~~~~   86 (243)
                      .++.+..+|+.. .+.-+|.|..+| . -..++++..+.......++.|+.|.++.++... -.|+.+. .+| ...+..
T Consensus       396 t~v~f~~~g~~llssSLDGtVRAwDlkRYrNfRTft~P~p~QfscvavD~sGelV~AG~~d~F~IfvWS~qTGqllDiLs  475 (893)
T KOG0291|consen  396 TAVQFTARGNVLLSSSLDGTVRAWDLKRYRNFRTFTSPEPIQFSCVAVDPSGELVCAGAQDSFEIFVWSVQTGQLLDILS  475 (893)
T ss_pred             EEEEEEecCCEEEEeecCCeEEeeeecccceeeeecCCCceeeeEEEEcCCCCEEEeeccceEEEEEEEeecCeeeehhc
Confidence            345666666544 444788888888 2 234566655444445479999999994444432 2578888 788 332222


Q ss_pred             ccCCCcccCCccEEEcCCCcEEEEeCCCCCCcccccccccccCCCceEEEEeCCCCeeEEeeccccccceEEEcCCCCEE
Q 026118           87 QFNGSQLRFANDVIEASDGSLYFTVSSTKFTPAEYYLDLVSGEPHGVLLKYDPSTNQTSLVLDGLYFANGVALSEDERFL  166 (243)
Q Consensus        87 ~~~~~~~~~~~~l~~d~~G~l~v~~~~~~~~~~~~~~~~~~~~~~g~v~~~~~~~~~~~~~~~~~~~~~gi~~~~dg~~l  166 (243)
                      ..+    ..+.++.++++|++.++-+..               ..-++|-+=...++.+.+.. .....+++|.|||+-|
T Consensus       476 GHE----gPVs~l~f~~~~~~LaS~SWD---------------kTVRiW~if~s~~~vEtl~i-~sdvl~vsfrPdG~el  535 (893)
T KOG0291|consen  476 GHE----GPVSGLSFSPDGSLLASGSWD---------------KTVRIWDIFSSSGTVETLEI-RSDVLAVSFRPDGKEL  535 (893)
T ss_pred             CCC----CcceeeEEccccCeEEecccc---------------ceEEEEEeeccCceeeeEee-ccceeEEEEcCCCCeE
Confidence            112    235678999999988875431               22355543333366666532 2335678999999999


Q ss_pred             EEEEcCCCeEEEEEeecC-CCcce-------------EEeccC---CCCCCCceEECCCCCEEEEEecCCc
Q 026118          167 VVCESWKFRCVKHFLKVS-GRTDR-------------EIFIDN---LPGGPDNVNLARDGSFWISIIKMDP  220 (243)
Q Consensus       167 ~v~~~~~~~i~~~~~~~~-~~~~~-------------~~~~~~---~~~~~~~i~~d~~G~lwv~~~~~~~  220 (243)
                      -|+. .+++|..||.... ..+..             ..+...   .......|+.+.||...++.....+
T Consensus       536 aVaT-ldgqItf~d~~~~~q~~~IdgrkD~~~gR~~~D~~ta~~sa~~K~Ftti~ySaDG~~IlAgG~sn~  605 (893)
T KOG0291|consen  536 AVAT-LDGQITFFDIKEAVQVGSIDGRKDLSGGRKETDRITAENSAKGKTFTTICYSADGKCILAGGESNS  605 (893)
T ss_pred             EEEE-ecceEEEEEhhhceeeccccchhhccccccccceeehhhcccCCceEEEEEcCCCCEEEecCCccc
Confidence            9885 4678988887521 11100             011000   1112345888999998777655443

>KOG1446 consensus Histone H3 (Lys4) methyltransferase complex and RNA cleavage factor II complex, subunit SWD2 [RNA processing and modification; Chromatin structure and dynamics; Posttranslational modification, protein turnover, chaperones]

Probab=98.22  E-value=0.0011  Score=52.54  Aligned_cols=179  Identities=9%  Similarity=0.055  Sum_probs=95.4

Q ss_pred             CcccEEEcC-CCc-EEEEe-CCCcEEEEc-cCCceeEecccCCccccceEEccCCCEEEEEeC-CCcEEEEe-cCC-cEE
Q 026118           11 HPEDVSVDG-NGV-LYTAT-GDGWIKRMH-PNGTWEDWHQVGSQSLLGLTTTKENNVIIVCDS-QQGLLKVS-EEG-VTV   83 (243)
Q Consensus        11 ~p~~i~~d~-~g~-l~~~~-~~~~i~~~~-~~g~~~~~~~~~~~~~~~i~~~~~g~l~~v~~~-~~gl~~~~-~~g-~~~   83 (243)
                      +++.+.+.. ... ++.++ .+..|..++ -+.+..++-........+|..+|.++. |+... ++-|..+| +.. ...
T Consensus        58 G~~~~~Fth~~~~~i~sStk~d~tIryLsl~dNkylRYF~GH~~~V~sL~~sP~~d~-FlS~S~D~tvrLWDlR~~~cqg  136 (311)
T KOG1446|consen   58 GVDLACFTHHSNTVIHSSTKEDDTIRYLSLHDNKYLRYFPGHKKRVNSLSVSPKDDT-FLSSSLDKTVRLWDLRVKKCQG  136 (311)
T ss_pred             cccEEEEecCCceEEEccCCCCCceEEEEeecCceEEEcCCCCceEEEEEecCCCCe-EEecccCCeEEeeEecCCCCce
Confidence            455556653 333 44443 456677777 345544443322233338888888888 55543 34566777 422 222


Q ss_pred             EEeccCCCcccCCccEEEcCCCcEEEEeCCCCCCcccccccccccCCCceEEEEeCCC---CeeEEe--e-ccccccceE
Q 026118           84 LVSQFNGSQLRFANDVIEASDGSLYFTVSSTKFTPAEYYLDLVSGEPHGVLLKYDPST---NQTSLV--L-DGLYFANGV  157 (243)
Q Consensus        84 ~~~~~~~~~~~~~~~l~~d~~G~l~v~~~~~~~~~~~~~~~~~~~~~~g~v~~~~~~~---~~~~~~--~-~~~~~~~gi  157 (243)
                      +..      .....-.++||+|-++..-.+                 +..|-.||...   |-.+.+  . ......+.|
T Consensus       137 ~l~------~~~~pi~AfDp~GLifA~~~~-----------------~~~IkLyD~Rs~dkgPF~tf~i~~~~~~ew~~l  193 (311)
T KOG1446|consen  137 LLN------LSGRPIAAFDPEGLIFALANG-----------------SELIKLYDLRSFDKGPFTTFSITDNDEAEWTDL  193 (311)
T ss_pred             EEe------cCCCcceeECCCCcEEEEecC-----------------CCeEEEEEecccCCCCceeEccCCCCccceeee
Confidence            221      122335589999977766432                 22565666543   222222  1 234456789


Q ss_pred             EEcCCCCEEEEEEcCCCeEEEEEeecCCC-cceEEeccCCCCCCCceEECCCCCEEEEE
Q 026118          158 ALSEDERFLVVCESWKFRCVKHFLKVSGR-TDREIFIDNLPGGPDNVNLARDGSFWISI  215 (243)
Q Consensus       158 ~~~~dg~~l~v~~~~~~~i~~~~~~~~~~-~~~~~~~~~~~~~~~~i~~d~~G~lwv~~  215 (243)
                      .|++||++|.+++. .+.++.+|.-.+.. ...+.. ......|-..++.+||+..++.
T Consensus       194 ~FS~dGK~iLlsT~-~s~~~~lDAf~G~~~~tfs~~-~~~~~~~~~a~ftPds~Fvl~g  250 (311)
T KOG1446|consen  194 EFSPDGKSILLSTN-ASFIYLLDAFDGTVKSTFSGY-PNAGNLPLSATFTPDSKFVLSG  250 (311)
T ss_pred             EEcCCCCEEEEEeC-CCcEEEEEccCCcEeeeEeec-cCCCCcceeEEECCCCcEEEEe
Confidence            99999999998864 56777777543322 111221 1222234445555666544443

>PRK01029 tolB translocation protein TolB; Provisional

Probab=98.22  E-value=0.0012  Score=56.49  Aligned_cols=172  Identities=15%  Similarity=0.084  Sum_probs=89.9

Q ss_pred             EEEcCCCc----EEEEeC--CCcEEEEcc-CCceeEecccCCccccceEEccCCCEEEEEeCCC---cEEE--Ee-cC--
Q 026118           15 VSVDGNGV----LYTATG--DGWIKRMHP-NGTWEDWHQVGSQSLLGLTTTKENNVIIVCDSQQ---GLLK--VS-EE--   79 (243)
Q Consensus        15 i~~d~~g~----l~~~~~--~~~i~~~~~-~g~~~~~~~~~~~~~~~i~~~~~g~l~~v~~~~~---gl~~--~~-~~--   79 (243)
                      ..+.|||.    +|++..  ...|+..+. .|+...+....+... ..+++|||+.|.++....   .++.  ++ ..  
T Consensus       190 P~wSPDG~~~~~~y~S~~~g~~~I~~~~l~~g~~~~lt~~~g~~~-~p~wSPDG~~Laf~s~~~g~~di~~~~~~~~~g~  268 (428)
T PRK01029        190 PTWMHIGSGFPYLYVSYKLGVPKIFLGSLENPAGKKILALQGNQL-MPTFSPRKKLLAFISDRYGNPDLFIQSFSLETGA  268 (428)
T ss_pred             ceEccCCCceEEEEEEccCCCceEEEEECCCCCceEeecCCCCcc-ceEECCCCCEEEEEECCCCCcceeEEEeecccCC
Confidence            45667763    235543  345787774 444443333223334 678899997533333211   3444  34 32  


Q ss_pred             -C-cEEEEeccCCCcccCCccEEEcCCCc-EEEEeCCCCCCcccccccccccCCCceEEEEeCC--CCeeEEeecccccc
Q 026118           80 -G-VTVLVSQFNGSQLRFANDVIEASDGS-LYFTVSSTKFTPAEYYLDLVSGEPHGVLLKYDPS--TNQTSLVLDGLYFA  154 (243)
Q Consensus        80 -g-~~~~~~~~~~~~~~~~~~l~~d~~G~-l~v~~~~~~~~~~~~~~~~~~~~~~g~v~~~~~~--~~~~~~~~~~~~~~  154 (243)
                       + .+.+....    .......+++|||+ |.++...               .....||.++.+  +++.+.+.......
T Consensus       269 ~g~~~~lt~~~----~~~~~~p~wSPDG~~Laf~s~~---------------~g~~~ly~~~~~~~g~~~~~lt~~~~~~  329 (428)
T PRK01029        269 IGKPRRLLNEA----FGTQGNPSFSPDGTRLVFVSNK---------------DGRPRIYIMQIDPEGQSPRLLTKKYRNS  329 (428)
T ss_pred             CCcceEeecCC----CCCcCCeEECCCCCEEEEEECC---------------CCCceEEEEECcccccceEEeccCCCCc
Confidence             2 23332211    11123458899997 5554221               112368887764  23445554333344


Q ss_pred             ceEEEcCCCCEEEEEEcC--CCeEEEEEeecCCCcceEEeccCCCCCCCceEECCCCC
Q 026118          155 NGVALSEDERFLVVCESW--KFRCVKHFLKVSGRTDREIFIDNLPGGPDNVNLARDGS  210 (243)
Q Consensus       155 ~gi~~~~dg~~l~v~~~~--~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~i~~d~~G~  210 (243)
                      ....++|||+.|+++...  ...|+.++++++..   +.+... ........++++|+
T Consensus       330 ~~p~wSPDG~~Laf~~~~~g~~~I~v~dl~~g~~---~~Lt~~-~~~~~~p~wSpDG~  383 (428)
T PRK01029        330 SCPAWSPDGKKIAFCSVIKGVRQICVYDLATGRD---YQLTTS-PENKESPSWAIDSL  383 (428)
T ss_pred             cceeECCCCCEEEEEEcCCCCcEEEEEECCCCCe---EEccCC-CCCccceEECCCCC
Confidence            568999999988776543  34688888876422   222211 22234466667776

>KOG2055 consensus WD40 repeat protein [General function prediction only]

Probab=98.20  E-value=0.00021  Score=59.26  Aligned_cols=182  Identities=14%  Similarity=0.110  Sum_probs=107.6

Q ss_pred             cccEEEcCCCc-EEEEeCCCcEEEEccCCce----eEecccCCccccceEEccCCC-EEEEEeCCCcEEEEe-cCC-cEE
Q 026118           12 PEDVSVDGNGV-LYTATGDGWIKRMHPNGTW----EDWHQVGSQSLLGLTTTKENN-VIIVCDSQQGLLKVS-EEG-VTV   83 (243)
Q Consensus        12 p~~i~~d~~g~-l~~~~~~~~i~~~~~~g~~----~~~~~~~~~~~~~i~~~~~g~-l~~v~~~~~gl~~~~-~~g-~~~   83 (243)
                      -.+|-+-+.-. |.++..++.+..+.-+|+.    ..... ...|.....|.++|. .++++....=+|.|| .+. +..
T Consensus       216 I~sv~FHp~~plllvaG~d~~lrifqvDGk~N~~lqS~~l-~~fPi~~a~f~p~G~~~i~~s~rrky~ysyDle~ak~~k  294 (514)
T KOG2055|consen  216 ITSVQFHPTAPLLLVAGLDGTLRIFQVDGKVNPKLQSIHL-EKFPIQKAEFAPNGHSVIFTSGRRKYLYSYDLETAKVTK  294 (514)
T ss_pred             ceEEEecCCCceEEEecCCCcEEEEEecCccChhheeeee-ccCccceeeecCCCceEEEecccceEEEEeecccccccc
Confidence            34566666554 5566566655444434433    32222 134543677889998 535554444578888 555 444


Q ss_pred             EEeccCCCcccCCccEEEcCCCcEEEEeCCCCCCcccccccccccCCCceEEEEeCCCCeeEEeeccccccceEEEcCCC
Q 026118           84 LVSQFNGSQLRFANDVIEASDGSLYFTVSSTKFTPAEYYLDLVSGEPHGVLLKYDPSTNQTSLVLDGLYFANGVALSEDE  163 (243)
Q Consensus        84 ~~~~~~~~~~~~~~~l~~d~~G~l~v~~~~~~~~~~~~~~~~~~~~~~g~v~~~~~~~~~~~~~~~~~~~~~gi~~~~dg  163 (243)
                      +.. +.+..........+++++++.+..                 ...|.|+.+...++++..-..-.....+++|+.|+
T Consensus       295 ~~~-~~g~e~~~~e~FeVShd~~fia~~-----------------G~~G~I~lLhakT~eli~s~KieG~v~~~~fsSds  356 (514)
T KOG2055|consen  295 LKP-PYGVEEKSMERFEVSHDSNFIAIA-----------------GNNGHIHLLHAKTKELITSFKIEGVVSDFTFSSDS  356 (514)
T ss_pred             ccC-CCCcccchhheeEecCCCCeEEEc-----------------ccCceEEeehhhhhhhhheeeeccEEeeEEEecCC
Confidence            432 222223355567889999855442                 13467888888877765444334566789999999


Q ss_pred             CEEEEEEcCCCeEEEEEeecCCCcceEEeccCCCCCCCceEECCCCCEEEEEe
Q 026118          164 RFLVVCESWKFRCVKHFLKVSGRTDREIFIDNLPGGPDNVNLARDGSFWISII  216 (243)
Q Consensus       164 ~~l~v~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~i~~d~~G~lwv~~~  216 (243)
                      +.||++. ..+.|+.+++...  .-...|.+...-.-..+|.+.+|. |+++.
T Consensus       357 k~l~~~~-~~GeV~v~nl~~~--~~~~rf~D~G~v~gts~~~S~ng~-ylA~G  405 (514)
T KOG2055|consen  357 KELLASG-GTGEVYVWNLRQN--SCLHRFVDDGSVHGTSLCISLNGS-YLATG  405 (514)
T ss_pred             cEEEEEc-CCceEEEEecCCc--ceEEEEeecCccceeeeeecCCCc-eEEec
Confidence            9888875 4579999998754  222333322111223488888887 55443

>KOG1446 consensus Histone H3 (Lys4) methyltransferase complex and RNA cleavage factor II complex, subunit SWD2 [RNA processing and modification; Chromatin structure and dynamics; Posttranslational modification, protein turnover, chaperones]

Probab=98.20  E-value=0.0012  Score=52.17  Aligned_cols=148  Identities=10%  Similarity=0.063  Sum_probs=86.4

Q ss_pred             ccEEEcCCCcEEEEe-CCCcEEEEccC-CceeEecccCCccccceEEccCCCEEEEEeCCCcEEEEe-c---CC-cEEEE
Q 026118           13 EDVSVDGNGVLYTAT-GDGWIKRMHPN-GTWEDWHQVGSQSLLGLTTTKENNVIIVCDSQQGLLKVS-E---EG-VTVLV   85 (243)
Q Consensus        13 ~~i~~d~~g~l~~~~-~~~~i~~~~~~-g~~~~~~~~~~~~~~~i~~~~~g~l~~v~~~~~gl~~~~-~---~g-~~~~~   85 (243)
                      .+|...|-+..+++. .+..|+.||.. .+-...... ..+. -.|+||+|-++.++.....|-.+| +   .| +..+.
T Consensus       104 ~sL~~sP~~d~FlS~S~D~tvrLWDlR~~~cqg~l~~-~~~p-i~AfDp~GLifA~~~~~~~IkLyD~Rs~dkgPF~tf~  181 (311)
T KOG1446|consen  104 NSLSVSPKDDTFLSSSLDKTVRLWDLRVKKCQGLLNL-SGRP-IAAFDPEGLIFALANGSELIKLYDLRSFDKGPFTTFS  181 (311)
T ss_pred             EEEEecCCCCeEEecccCCeEEeeEecCCCCceEEec-CCCc-ceeECCCCcEEEEecCCCeEEEEEecccCCCCceeEc
Confidence            345666655666554 56667777621 111111111 1223 578999998834444334566666 3   35 44443


Q ss_pred             eccCCCcccCCccEEEcCCCc-EEEEeCCCCCCcccccccccccCCCceEEEEeCCCCeeEEeec----cccccceEEEc
Q 026118           86 SQFNGSQLRFANDVIEASDGS-LYFTVSSTKFTPAEYYLDLVSGEPHGVLLKYDPSTNQTSLVLD----GLYFANGVALS  160 (243)
Q Consensus        86 ~~~~~~~~~~~~~l~~d~~G~-l~v~~~~~~~~~~~~~~~~~~~~~~g~v~~~~~~~~~~~~~~~----~~~~~~gi~~~  160 (243)
                      ...  .....-..|.+++||. +.+++..                  +.++.+|.=.|.+..-..    ....|-+..++
T Consensus       182 i~~--~~~~ew~~l~FS~dGK~iLlsT~~------------------s~~~~lDAf~G~~~~tfs~~~~~~~~~~~a~ft  241 (311)
T KOG1446|consen  182 ITD--NDEAEWTDLEFSPDGKSILLSTNA------------------SFIYLLDAFDGTVKSTFSGYPNAGNLPLSATFT  241 (311)
T ss_pred             cCC--CCccceeeeEEcCCCCEEEEEeCC------------------CcEEEEEccCCcEeeeEeeccCCCCcceeEEEC
Confidence            221  2234456889999997 5556433                  467888877776543221    22345578899


Q ss_pred             CCCCEEEEEEcCCCeEEEEEeec
Q 026118          161 EDERFLVVCESWKFRCVKHFLKV  183 (243)
Q Consensus       161 ~dg~~l~v~~~~~~~i~~~~~~~  183 (243)
                      ||++.+..+ ..+++|..|+...
T Consensus       242 Pds~Fvl~g-s~dg~i~vw~~~t  263 (311)
T KOG1446|consen  242 PDSKFVLSG-SDDGTIHVWNLET  263 (311)
T ss_pred             CCCcEEEEe-cCCCcEEEEEcCC
Confidence            999955544 6778999999864

>KOG0278 consensus Serine/threonine kinase receptor-associated protein [Lipid transport and metabolism]

Probab=98.19  E-value=6.4e-05  Score=57.71  Aligned_cols=129  Identities=12%  Similarity=0.075  Sum_probs=78.8

Q ss_pred             EEEeCCCcEEEEe-cCC--cEEEEeccCCCcccCCccEEEcCCCcEEEEeCCCCCCcccccccccccCCCceEEEEeCCC
Q 026118           65 IVCDSQQGLLKVS-EEG--VTVLVSQFNGSQLRFANDVIEASDGSLYFTVSSTKFTPAEYYLDLVSGEPHGVLLKYDPST  141 (243)
Q Consensus        65 ~v~~~~~gl~~~~-~~g--~~~~~~~~~~~~~~~~~~l~~d~~G~l~v~~~~~~~~~~~~~~~~~~~~~~g~v~~~~~~~  141 (243)
                      ..+.....|..+| .+|  +..+..      ...+.++.+.++|++.....+                  +.|-..|+++
T Consensus       159 LSSadd~tVRLWD~rTgt~v~sL~~------~s~VtSlEvs~dG~ilTia~g------------------ssV~Fwdaks  214 (334)
T KOG0278|consen  159 LSSADDKTVRLWDHRTGTEVQSLEF------NSPVTSLEVSQDGRILTIAYG------------------SSVKFWDAKS  214 (334)
T ss_pred             EeeccCCceEEEEeccCcEEEEEec------CCCCcceeeccCCCEEEEecC------------------ceeEEecccc
Confidence            3334445677777 777  222321      245678899999997776322                  4677788875


Q ss_pred             CeeEEeeccccccceEEEcCCCCEEEEEEcCCCeEEEEEeecCCCcceEEeccCCCCCCCceEECCCCCEEEEEecCCc
Q 026118          142 NQTSLVLDGLYFANGVALSEDERFLVVCESWKFRCVKHFLKVSGRTDREIFIDNLPGGPDNVNLARDGSFWISIIKMDP  220 (243)
Q Consensus       142 ~~~~~~~~~~~~~~gi~~~~dg~~l~v~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~i~~d~~G~lwv~~~~~~~  220 (243)
                      -.+....+-.....+..++|+.. .||+.-.+..+++||.+.+.  ....+..+..+-...+.+.++|.+|.+..+.+.
T Consensus       215 f~~lKs~k~P~nV~SASL~P~k~-~fVaGged~~~~kfDy~Tge--Ei~~~nkgh~gpVhcVrFSPdGE~yAsGSEDGT  290 (334)
T KOG0278|consen  215 FGLLKSYKMPCNVESASLHPKKE-FFVAGGEDFKVYKFDYNTGE--EIGSYNKGHFGPVHCVRFSPDGELYASGSEDGT  290 (334)
T ss_pred             ccceeeccCccccccccccCCCc-eEEecCcceEEEEEeccCCc--eeeecccCCCCceEEEEECCCCceeeccCCCce
Confidence            44333222223345566778886 99998888899999998541  111222233333456777888888887766553

>TIGR03032 conserved hypothetical protein TIGR03032

Probab=98.19  E-value=0.00038  Score=55.66  Aligned_cols=192  Identities=15%  Similarity=0.132  Sum_probs=108.7

Q ss_pred             ccCCcccEEEcCCCcEEEEeCCCcEEEE---c---c----CCceeEe-------cccCCccccceEEccCCCEEEEEeCC
Q 026118            8 IVNHPEDVSVDGNGVLYTATGDGWIKRM---H---P----NGTWEDW-------HQVGSQSLLGLTTTKENNVIIVCDSQ   70 (243)
Q Consensus         8 ~~~~p~~i~~d~~g~l~~~~~~~~i~~~---~---~----~g~~~~~-------~~~~~~~~~~i~~~~~g~l~~v~~~~   70 (243)
                      .+..|=++++.+ ..||+++. ..|.++   +   +    .+.....       ....-+.. .|++ .++.+ |+.+..
T Consensus        47 ~F~r~MGl~~~~-~~l~~~t~-~qiw~f~~~~n~l~~~~~~~~~D~~yvPr~~~~TGdidiH-dia~-~~~~l-~fVNT~  121 (335)
T TIGR03032        47 TFPRPMGLAVSP-QSLTLGTR-YQLWRFANVDNLLPAGQTHPGYDRLYVPRASYVTGDIDAH-DLAL-GAGRL-LFVNTL  121 (335)
T ss_pred             ccCccceeeeeC-CeEEEEEc-ceeEEcccccccccccccCCCCCeEEeeeeeeeccCcchh-heee-cCCcE-EEEECc
Confidence            356677777755 36888763 246666   2   1    1111111       11112233 5777 56677 666654


Q ss_pred             C-cEEEEecCC-cEEEEe-----ccCCCcccCCccEEEcCCCcEEEEeCCCCCCcccccccccccCCCceEEEEeCCCCe
Q 026118           71 Q-GLLKVSEEG-VTVLVS-----QFNGSQLRFANDVIEASDGSLYFTVSSTKFTPAEYYLDLVSGEPHGVLLKYDPSTNQ  143 (243)
Q Consensus        71 ~-gl~~~~~~g-~~~~~~-----~~~~~~~~~~~~l~~d~~G~l~v~~~~~~~~~~~~~~~~~~~~~~g~v~~~~~~~~~  143 (243)
                      - =|..+++.- +.+.-.     ......-=+.|||+.....-.|++.-+..--+..|    -..+..|++. +|-.+++
T Consensus       122 fSCLatl~~~~SF~P~WkPpFIs~la~eDRCHLNGlA~~~g~p~yVTa~~~sD~~~gW----R~~~~~gG~v-idv~s~e  196 (335)
T TIGR03032       122 FSCLATVSPDYSFVPLWKPPFISKLAPEDRCHLNGMALDDGEPRYVTALSQSDVADGW----REGRRDGGCV-IDIPSGE  196 (335)
T ss_pred             ceeEEEECCCCccccccCCccccccCccCceeecceeeeCCeEEEEEEeeccCCcccc----cccccCCeEE-EEeCCCC
Confidence            3 356666433 333221     11111112567888754334776642210001112    1223445554 6776554


Q ss_pred             eEEeeccccccceEEEcCCCCEEEEEEcCCCeEEEEEeecCCCcceEEeccCCCCCCCceEECCCCC-EEEEEecCC
Q 026118          144 TSLVLDGLYFANGVALSEDERFLVVCESWKFRCVKHFLKVSGRTDREIFIDNLPGGPDNVNLARDGS-FWISIIKMD  219 (243)
Q Consensus       144 ~~~~~~~~~~~~gi~~~~dg~~l~v~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~i~~d~~G~-lwv~~~~~~  219 (243)
                        .+..++..|.+.-+. +|+ ||++++.++.|.++|.+.   +..+.+. ..+++|.||++.  |+ ++|+...-+
T Consensus       197 --vl~~GLsmPhSPRWh-dgr-LwvldsgtGev~~vD~~~---G~~e~Va-~vpG~~rGL~f~--G~llvVgmSk~R  263 (335)
T TIGR03032       197 --VVASGLSMPHSPRWY-QGK-LWLLNSGRGELGYVDPQA---GKFQPVA-FLPGFTRGLAFA--GDFAFVGLSKLR  263 (335)
T ss_pred             --EEEcCccCCcCCcEe-CCe-EEEEECCCCEEEEEcCCC---CcEEEEE-ECCCCCccccee--CCEEEEEecccc
Confidence              467888889888886 677 999999999999999764   3344544 467899999998  77 566665544

This protein family is uncharacterized. A number of motifs are conserved perfectly among all member sequences. The function of this protein is unknown.

>TIGR02800 propeller_TolB tol-pal system beta propeller repeat protein TolB

Probab=98.13  E-value=0.0018  Score=55.14  Aligned_cols=156  Identities=12%  Similarity=0.077  Sum_probs=87.5

Q ss_pred             cEEEEccCCc-eeEecccCCccccceEEccCCCEEEEEeCC---CcEEEEe-cCC-cEEEEeccCCCcccCCccEEEcCC
Q 026118           31 WIKRMHPNGT-WEDWHQVGSQSLLGLTTTKENNVIIVCDSQ---QGLLKVS-EEG-VTVLVSQFNGSQLRFANDVIEASD  104 (243)
Q Consensus        31 ~i~~~~~~g~-~~~~~~~~~~~~~~i~~~~~g~l~~v~~~~---~gl~~~~-~~g-~~~~~~~~~~~~~~~~~~l~~d~~  104 (243)
                      .|+..+.++. .+.+... ..+.....+++||+.++++...   ..|+.++ .++ .+.+.. ..    .....++++||
T Consensus       171 ~l~~~d~~g~~~~~l~~~-~~~~~~p~~Spdg~~la~~~~~~~~~~i~v~d~~~g~~~~~~~-~~----~~~~~~~~spD  244 (417)
T TIGR02800       171 ELQVADYDGANPQTITRS-REPILSPAWSPDGQKLAYVSFESGKPEIYVQDLATGQREKVAS-FP----GMNGAPAFSPD  244 (417)
T ss_pred             eEEEEcCCCCCCEEeecC-CCceecccCCCCCCEEEEEEcCCCCcEEEEEECCCCCEEEeec-CC----CCccceEECCC
Confidence            4666664433 3333222 2222267788999865554433   2488888 666 443332 11    12335688999


Q ss_pred             Cc-EEEEeCCCCCCcccccccccccCCCceEEEEeCCCCeeEEeeccccccceEEEcCCCCEEEEEEcC--CCeEEEEEe
Q 026118          105 GS-LYFTVSSTKFTPAEYYLDLVSGEPHGVLLKYDPSTNQTSLVLDGLYFANGVALSEDERFLVVCESW--KFRCVKHFL  181 (243)
Q Consensus       105 G~-l~v~~~~~~~~~~~~~~~~~~~~~~g~v~~~~~~~~~~~~~~~~~~~~~gi~~~~dg~~l~v~~~~--~~~i~~~~~  181 (243)
                      |+ ++++...               .....||.++.+++..+.+...........+++||++|+++...  ...|+.++.
T Consensus       245 g~~l~~~~~~---------------~~~~~i~~~d~~~~~~~~l~~~~~~~~~~~~s~dg~~l~~~s~~~g~~~iy~~d~  309 (417)
T TIGR02800       245 GSKLAVSLSK---------------DGNPDIYVMDLDGKQLTRLTNGPGIDTEPSWSPDGKSIAFTSDRGGSPQIYMMDA  309 (417)
T ss_pred             CCEEEEEECC---------------CCCccEEEEECCCCCEEECCCCCCCCCCEEECCCCCEEEEEECCCCCceEEEEEC
Confidence            86 5555322               12246999999887776665433333457889999988766432  246888887


Q ss_pred             ecCCCcceEEeccCCCCCCCceEECCCCCE
Q 026118          182 KVSGRTDREIFIDNLPGGPDNVNLARDGSF  211 (243)
Q Consensus       182 ~~~~~~~~~~~~~~~~~~~~~i~~d~~G~l  211 (243)
                      .+..   .+.+. .........+++++|+.
T Consensus       310 ~~~~---~~~l~-~~~~~~~~~~~spdg~~  335 (417)
T TIGR02800       310 DGGE---VRRLT-FRGGYNASPSWSPDGDL  335 (417)
T ss_pred             CCCC---EEEee-cCCCCccCeEECCCCCE
Confidence            6532   22221 11223345667777763

The Tol-PAL system is required for bacterial outer membrane integrity. E. coli TolB is involved in the tonB-independent uptake of group A colicins (colicins A, E1, E2, E3 and K), and is necessary for the colicins to reach their respective targets after initial binding to the bacteria. It is also involved in uptake of filamentous DNA. Study of its structure suggest that the TolB protein might be involved in the recycling of peptidoglycan or in its covalent linking with lipoproteins. The Tol-Pal system is also implicated in pathogenesis of E. coli, Haemophilus ducreyi, Salmonella enterica and Vibrio cholerae, but the mechanism(s) is unclear.

>KOG0318 consensus WD40 repeat stress protein/actin interacting protein [Cytoskeleton]

Probab=98.13  E-value=0.00072  Score=57.07  Aligned_cols=153  Identities=14%  Similarity=0.084  Sum_probs=94.7

Q ss_pred             CCcccEEEcCCCcEEEEeCCCcEEEEccCCceeEecccCCccccceEEccCCCEEEEEeCCCcEEEEe-cC-CcEEEEec
Q 026118           10 NHPEDVSVDGNGVLYTATGDGWIKRMHPNGTWEDWHQVGSQSLLGLTTTKENNVIIVCDSQQGLLKVS-EE-GVTVLVSQ   87 (243)
Q Consensus        10 ~~p~~i~~d~~g~l~~~~~~~~i~~~~~~g~~~~~~~~~~~~~~~i~~~~~g~l~~v~~~~~gl~~~~-~~-g~~~~~~~   87 (243)
                      ..|.++++.++|.+-+......|..+...+....... .-.+. ++++++++..+.|+..+..|..+. .. ........
T Consensus       406 ~QP~~lav~~d~~~avv~~~~~iv~l~~~~~~~~~~~-~y~~s-~vAv~~~~~~vaVGG~Dgkvhvysl~g~~l~ee~~~  483 (603)
T KOG0318|consen  406 SQPKGLAVLSDGGTAVVACISDIVLLQDQTKVSSIPI-GYESS-AVAVSPDGSEVAVGGQDGKVHVYSLSGDELKEEAKL  483 (603)
T ss_pred             CCceeEEEcCCCCEEEEEecCcEEEEecCCcceeecc-ccccc-eEEEcCCCCEEEEecccceEEEEEecCCcccceeee
Confidence            4699999998875443333344666653333333322 23455 899999999855555444555555 22 22221111


Q ss_pred             cCCCcccCCccEEEcCCCcEEEEeCCCCCCcccccccccccCCCceEEEEeCCCCeeEEe--eccccccceEEEcCCCCE
Q 026118           88 FNGSQLRFANDVIEASDGSLYFTVSSTKFTPAEYYLDLVSGEPHGVLLKYDPSTNQTSLV--LDGLYFANGVALSEDERF  165 (243)
Q Consensus        88 ~~~~~~~~~~~l~~d~~G~l~v~~~~~~~~~~~~~~~~~~~~~~g~v~~~~~~~~~~~~~--~~~~~~~~gi~~~~dg~~  165 (243)
                      ...  ...+..++++|||.++.+..                 ....+..|+..+.+....  .-.....+.++++|+.+ 
T Consensus       484 ~~h--~a~iT~vaySpd~~yla~~D-----------------a~rkvv~yd~~s~~~~~~~w~FHtakI~~~aWsP~n~-  543 (603)
T KOG0318|consen  484 LEH--RAAITDVAYSPDGAYLAAGD-----------------ASRKVVLYDVASREVKTNRWAFHTAKINCVAWSPNNK-  543 (603)
T ss_pred             ecc--cCCceEEEECCCCcEEEEec-----------------cCCcEEEEEcccCceecceeeeeeeeEEEEEeCCCce-
Confidence            111  13456889999999877632                 235788888887665322  11235678999999998 


Q ss_pred             EEEEEcCCCeEEEEEeecC
Q 026118          166 LVVCESWKFRCVKHFLKVS  184 (243)
Q Consensus       166 l~v~~~~~~~i~~~~~~~~  184 (243)
                      ++.+...+..|+.|+.+.+
T Consensus       544 ~vATGSlDt~Viiysv~kP  562 (603)
T KOG0318|consen  544 LVATGSLDTNVIIYSVKKP  562 (603)
T ss_pred             EEEeccccceEEEEEccCh
Confidence            7777677788999998764

>PRK04043 tolB translocation protein TolB; Provisional

Probab=98.11  E-value=0.0022  Score=54.64  Aligned_cols=132  Identities=15%  Similarity=0.084  Sum_probs=79.9

Q ss_pred             cEEEEccCCceeE-ecccCCccccceEEccCCC-EEEEEeCC---CcEEEEe-cCC-cEEEEeccCCCcccCCccEEEcC
Q 026118           31 WIKRMHPNGTWED-WHQVGSQSLLGLTTTKENN-VIIVCDSQ---QGLLKVS-EEG-VTVLVSQFNGSQLRFANDVIEAS  103 (243)
Q Consensus        31 ~i~~~~~~g~~~~-~~~~~~~~~~~i~~~~~g~-l~~v~~~~---~gl~~~~-~~g-~~~~~~~~~~~~~~~~~~l~~d~  103 (243)
                      .|+..|.+|.-.. +.. .+ +.....++|||+ ++++....   ..|+.++ .+| .+.+.. ..+    ......++|
T Consensus       170 ~l~~~d~dg~~~~~~~~-~~-~~~~p~wSpDG~~~i~y~s~~~~~~~Iyv~dl~tg~~~~lt~-~~g----~~~~~~~SP  242 (419)
T PRK04043        170 NIVLADYTLTYQKVIVK-GG-LNIFPKWANKEQTAFYYTSYGERKPTLYKYNLYTGKKEKIAS-SQG----MLVVSDVSK  242 (419)
T ss_pred             eEEEECCCCCceeEEcc-CC-CeEeEEECCCCCcEEEEEEccCCCCEEEEEECCCCcEEEEec-CCC----cEEeeEECC
Confidence            4556565554332 222 22 332567889997 34654433   3488999 677 555543 211    111236789


Q ss_pred             CCc-EEEEeCCCCCCcccccccccccCCCceEEEEeCCCCeeEEeeccccccceEEEcCCCCEEEEEEcC--CCeEEEEE
Q 026118          104 DGS-LYFTVSSTKFTPAEYYLDLVSGEPHGVLLKYDPSTNQTSLVLDGLYFANGVALSEDERFLVVCESW--KFRCVKHF  180 (243)
Q Consensus       104 ~G~-l~v~~~~~~~~~~~~~~~~~~~~~~g~v~~~~~~~~~~~~~~~~~~~~~gi~~~~dg~~l~v~~~~--~~~i~~~~  180 (243)
                      ||+ +.++.+.               .....||.++.++++.+++...........|+|||+.|+++...  ...|++++
T Consensus       243 DG~~la~~~~~---------------~g~~~Iy~~dl~~g~~~~LT~~~~~d~~p~~SPDG~~I~F~Sdr~g~~~Iy~~d  307 (419)
T PRK04043        243 DGSKLLLTMAP---------------KGQPDIYLYDTNTKTLTQITNYPGIDVNGNFVEDDKRIVFVSDRLGYPNIFMKK  307 (419)
T ss_pred             CCCEEEEEEcc---------------CCCcEEEEEECCCCcEEEcccCCCccCccEECCCCCEEEEEECCCCCceEEEEE
Confidence            985 6555322               12357999999888888775443333456899999988887543  24789988


Q ss_pred             eecC
Q 026118          181 LKVS  184 (243)
Q Consensus       181 ~~~~  184 (243)
                      .+++
T Consensus       308 l~~g  311 (419)
T PRK04043        308 LNSG  311 (419)
T ss_pred             CCCC
Confidence            8764

>PRK01742 tolB translocation protein TolB; Provisional

Probab=98.11  E-value=0.0015  Score=55.87  Aligned_cols=133  Identities=15%  Similarity=0.105  Sum_probs=76.8

Q ss_pred             cEEEEccCCceeEecccCCccccceEEccCCCEEEEEeCCC---cEEEEe-cCC-cEEEEeccCCCcccCCccEEEcCCC
Q 026118           31 WIKRMHPNGTWEDWHQVGSQSLLGLTTTKENNVIIVCDSQQ---GLLKVS-EEG-VTVLVSQFNGSQLRFANDVIEASDG  105 (243)
Q Consensus        31 ~i~~~~~~g~~~~~~~~~~~~~~~i~~~~~g~l~~v~~~~~---gl~~~~-~~g-~~~~~~~~~~~~~~~~~~l~~d~~G  105 (243)
                      .|+..|.+|.-.........+...+.++|||+.+..+....   .|+.++ .++ .+.+.. ..+    ....++++|||
T Consensus       185 ~i~i~d~dg~~~~~lt~~~~~v~~p~wSPDG~~la~~s~~~~~~~i~i~dl~tg~~~~l~~-~~g----~~~~~~wSPDG  259 (429)
T PRK01742        185 EVRVADYDGFNQFIVNRSSQPLMSPAWSPDGSKLAYVSFENKKSQLVVHDLRSGARKVVAS-FRG----HNGAPAFSPDG  259 (429)
T ss_pred             EEEEECCCCCCceEeccCCCccccceEcCCCCEEEEEEecCCCcEEEEEeCCCCceEEEec-CCC----ccCceeECCCC
Confidence            45566654432222111122333788999998644443322   488888 666 444432 221    12256899999


Q ss_pred             c-EEEEeCCCCCCcccccccccccCCCceEEEEeCCCCeeEEeeccccccceEEEcCCCCEEEEEEcCC--CeEEEEEee
Q 026118          106 S-LYFTVSSTKFTPAEYYLDLVSGEPHGVLLKYDPSTNQTSLVLDGLYFANGVALSEDERFLVVCESWK--FRCVKHFLK  182 (243)
Q Consensus       106 ~-l~v~~~~~~~~~~~~~~~~~~~~~~g~v~~~~~~~~~~~~~~~~~~~~~gi~~~~dg~~l~v~~~~~--~~i~~~~~~  182 (243)
                      + |.++.+.               ...-.||.+|.++++.+++...........|+|||+.|+++....  ..|+.++..
T Consensus       260 ~~La~~~~~---------------~g~~~Iy~~d~~~~~~~~lt~~~~~~~~~~wSpDG~~i~f~s~~~g~~~I~~~~~~  324 (429)
T PRK01742        260 SRLAFASSK---------------DGVLNIYVMGANGGTPSQLTSGAGNNTEPSWSPDGQSILFTSDRSGSPQVYRMSAS  324 (429)
T ss_pred             CEEEEEEec---------------CCcEEEEEEECCCCCeEeeccCCCCcCCEEECCCCCEEEEEECCCCCceEEEEECC
Confidence            7 4444221               112358999998888777665444556789999999887765433  356666554


Q ss_pred             c
Q 026118          183 V  183 (243)
Q Consensus       183 ~  183 (243)
                      +
T Consensus       325 ~  325 (429)
T PRK01742        325 G  325 (429)
T ss_pred             C
Confidence            3

>KOG0318 consensus WD40 repeat stress protein/actin interacting protein [Cytoskeleton]

Probab=98.09  E-value=0.0018  Score=54.80  Aligned_cols=187  Identities=16%  Similarity=0.169  Sum_probs=114.3

Q ss_pred             ccccCCcccEEEcCCC-cEEEEeCCCcEEEEc-cCCceeEec-ccCCccccceEEccCCCEEEEEeCCCcEEEEe-c-CC
Q 026118            6 EGIVNHPEDVSVDGNG-VLYTATGDGWIKRMH-PNGTWEDWH-QVGSQSLLGLTTTKENNVIIVCDSQQGLLKVS-E-EG   80 (243)
Q Consensus         6 ~g~~~~p~~i~~d~~g-~l~~~~~~~~i~~~~-~~g~~~~~~-~~~~~~~~~i~~~~~g~l~~v~~~~~gl~~~~-~-~g   80 (243)
                      .|....-.++++.+++ .||.++.+|.|..++ ..|.-.++. ....+...+|+.+..+.+ +.+.++.-|.+++ . ++
T Consensus       317 ~GHnK~ITaLtv~~d~~~i~SgsyDG~I~~W~~~~g~~~~~~g~~h~nqI~~~~~~~~~~~-~t~g~Dd~l~~~~~~~~~  395 (603)
T KOG0318|consen  317 SGHNKSITALTVSPDGKTIYSGSYDGHINSWDSGSGTSDRLAGKGHTNQIKGMAASESGEL-FTIGWDDTLRVISLKDNG  395 (603)
T ss_pred             cccccceeEEEEcCCCCEEEeeccCceEEEEecCCccccccccccccceEEEEeecCCCcE-EEEecCCeEEEEecccCc
Confidence            3434455567788777 688888999999998 344333221 111222227888777888 8888877787777 3 33


Q ss_pred             c-EEEEeccCCCcccCCccEEEcCCCc-EEEEeCCCCCCcccccccccccCCCceEEEEeCCCCeeEEeeccccccceEE
Q 026118           81 V-TVLVSQFNGSQLRFANDVIEASDGS-LYFTVSSTKFTPAEYYLDLVSGEPHGVLLKYDPSTNQTSLVLDGLYFANGVA  158 (243)
Q Consensus        81 ~-~~~~~~~~~~~~~~~~~l~~d~~G~-l~v~~~~~~~~~~~~~~~~~~~~~~g~v~~~~~~~~~~~~~~~~~~~~~gi~  158 (243)
                      . .......    ...|-++++.++|. +.++..                   ..|..+...++ ...+ .-...+..+|
T Consensus       396 ~t~~~~~~l----g~QP~~lav~~d~~~avv~~~-------------------~~iv~l~~~~~-~~~~-~~~y~~s~vA  450 (603)
T KOG0318|consen  396 YTKSEVVKL----GSQPKGLAVLSDGGTAVVACI-------------------SDIVLLQDQTK-VSSI-PIGYESSAVA  450 (603)
T ss_pred             ccccceeec----CCCceeEEEcCCCCEEEEEec-------------------CcEEEEecCCc-ceee-ccccccceEE
Confidence            2 2211111    13466899998875 444422                   24555553322 2222 2235677899


Q ss_pred             EcCCCCEEEEEEcCCCeEEEEEeecCCCcceEEeccCCCCCCCceEECCCCCEEEEEecCCc
Q 026118          159 LSEDERFLVVCESWKFRCVKHFLKVSGRTDREIFIDNLPGGPDNVNLARDGSFWISIIKMDP  220 (243)
Q Consensus       159 ~~~dg~~l~v~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~i~~d~~G~lwv~~~~~~~  220 (243)
                      ++|+++.+.|... ++.|+.|.+.++.+....... ...+-+..++.++||...+++...+.
T Consensus       451 v~~~~~~vaVGG~-Dgkvhvysl~g~~l~ee~~~~-~h~a~iT~vaySpd~~yla~~Da~rk  510 (603)
T KOG0318|consen  451 VSPDGSEVAVGGQ-DGKVHVYSLSGDELKEEAKLL-EHRAAITDVAYSPDGAYLAAGDASRK  510 (603)
T ss_pred             EcCCCCEEEEecc-cceEEEEEecCCcccceeeee-cccCCceEEEECCCCcEEEEeccCCc
Confidence            9999997777754 567999999886543322221 23345677899999987777665553

>PF05096 Glu_cyclase_2: Glutamine cyclotransferase; InterPro: IPR007788 This family of enzymes 2

Probab=98.06  E-value=0.0013  Score=51.66  Aligned_cols=148  Identities=22%  Similarity=0.244  Sum_probs=87.6

Q ss_pred             CcccEEEcCCCcEEEEe-CCCcEEEEccC-C-ceeEecccCCccccceEEccCCCEEEEEeCCCcEEEEecCC---cEEE
Q 026118           11 HPEDVSVDGNGVLYTAT-GDGWIKRMHPN-G-TWEDWHQVGSQSLLGLTTTKENNVIIVCDSQQGLLKVSEEG---VTVL   84 (243)
Q Consensus        11 ~p~~i~~d~~g~l~~~~-~~~~i~~~~~~-g-~~~~~~~~~~~~~~~i~~~~~g~l~~v~~~~~gl~~~~~~g---~~~~   84 (243)
                      ..|+|++-. +.||.-+ ..+..+.+|++ - ....+.. .+.-. ||+.|.+ .+ |+++....|+.+|+..   .+.+
T Consensus        91 FgEGit~~~-d~l~qLTWk~~~~f~yd~~tl~~~~~~~y-~~EGW-GLt~dg~-~L-i~SDGS~~L~~~dP~~f~~~~~i  165 (264)
T PF05096_consen   91 FGEGITILG-DKLYQLTWKEGTGFVYDPNTLKKIGTFPY-PGEGW-GLTSDGK-RL-IMSDGSSRLYFLDPETFKEVRTI  165 (264)
T ss_dssp             -EEEEEEET-TEEEEEESSSSEEEEEETTTTEEEEEEE--SSS---EEEECSS-CE-EEE-SSSEEEEE-TTT-SEEEEE
T ss_pred             cceeEEEEC-CEEEEEEecCCeEEEEccccceEEEEEec-CCcce-EEEcCCC-EE-EEECCccceEEECCcccceEEEE
Confidence            345666654 4678665 56777888853 2 2333322 24456 8885532 45 9999888899999543   3333


Q ss_pred             EeccCCCcccCCccEEEcCCCcEEEEeCCCCCCcccccccccccCCCceEEEEeCCCCeeEEeec-----------c---
Q 026118           85 VSQFNGSQLRFANDVIEASDGSLYFTVSSTKFTPAEYYLDLVSGEPHGVLLKYDPSTNQTSLVLD-----------G---  150 (243)
Q Consensus        85 ~~~~~~~~~~~~~~l~~d~~G~l~v~~~~~~~~~~~~~~~~~~~~~~g~v~~~~~~~~~~~~~~~-----------~---  150 (243)
                      .....+.+....|.|.+- +|.+|.=..                 .+..|+++||++|++.....           .   
T Consensus       166 ~V~~~g~pv~~LNELE~i-~G~IyANVW-----------------~td~I~~Idp~tG~V~~~iDls~L~~~~~~~~~~~  227 (264)
T PF05096_consen  166 QVTDNGRPVSNLNELEYI-NGKIYANVW-----------------QTDRIVRIDPETGKVVGWIDLSGLRPEVGRDKSRQ  227 (264)
T ss_dssp             E-EETTEE---EEEEEEE-TTEEEEEET-----------------TSSEEEEEETTT-BEEEEEE-HHHHHHHTSTTST-
T ss_pred             EEEECCEECCCcEeEEEE-cCEEEEEeC-----------------CCCeEEEEeCCCCeEEEEEEhhHhhhccccccccc
Confidence            333455556677777654 788887531                 24589999999998876421           0   


Q ss_pred             --ccccceEEEcCCCCEEEEEEcCCCeEEEEEe
Q 026118          151 --LYFANGVALSEDERFLVVCESWKFRCVKHFL  181 (243)
Q Consensus       151 --~~~~~gi~~~~dg~~l~v~~~~~~~i~~~~~  181 (243)
                        ...-||||++++.+.+||+.-.=..++.+.+
T Consensus       228 ~~~dVLNGIAyd~~~~~l~vTGK~Wp~lyeV~l  260 (264)
T PF05096_consen  228 PDDDVLNGIAYDPETDRLFVTGKLWPKLYEVKL  260 (264)
T ss_dssp             -TTS-EEEEEEETTTTEEEEEETT-SEEEEEEE
T ss_pred             ccCCeeEeEeEeCCCCEEEEEeCCCCceEEEEE
Confidence              1245899999999999999653356766654

3.2.5 from EC catalyse the cyclization of free L-glutamine and N-terminal glutaminyl residues in proteins to pyroglutamate (5-oxoproline) and pyroglutamyl residues respectively []. This family includes plant and bacterial enzymes and seems unrelated to the mammalian enzymes.; PDB: 3NOK_B 2FAW_A 2IWA_A 3NOM_A 3NOL_A 3MBR_X.

>KOG0286 consensus G-protein beta subunit [General function prediction only]

Probab=98.03  E-value=0.0037  Score=49.25  Aligned_cols=173  Identities=14%  Similarity=0.114  Sum_probs=105.9

Q ss_pred             ccEEEcCCCcEEEEeCCCcEEEEc-cCCc-eeEecccCCccccceEEcc-CCCEEEEEeCCC-cEEEEe-cCC-cEEEEe
Q 026118           13 EDVSVDGNGVLYTATGDGWIKRMH-PNGT-WEDWHQVGSQSLLGLTTTK-ENNVIIVCDSQQ-GLLKVS-EEG-VTVLVS   86 (243)
Q Consensus        13 ~~i~~d~~g~l~~~~~~~~i~~~~-~~g~-~~~~~~~~~~~~~~i~~~~-~g~l~~v~~~~~-gl~~~~-~~g-~~~~~~   86 (243)
                      .+..+-+|+.|..+..+.....+| +.|+ ...|.-..+... +|.+.| +++. ||...-. -...+| +.+ ..+...
T Consensus       149 ScC~f~dD~~ilT~SGD~TCalWDie~g~~~~~f~GH~gDV~-slsl~p~~~nt-FvSg~cD~~aklWD~R~~~c~qtF~  226 (343)
T KOG0286|consen  149 SCCRFLDDNHILTGSGDMTCALWDIETGQQTQVFHGHTGDVM-SLSLSPSDGNT-FVSGGCDKSAKLWDVRSGQCVQTFE  226 (343)
T ss_pred             EEEEEcCCCceEecCCCceEEEEEcccceEEEEecCCcccEE-EEecCCCCCCe-EEecccccceeeeeccCcceeEeec
Confidence            344454577788887777888888 5554 445554445556 788888 8898 7765433 345566 666 333222


Q ss_pred             ccCCCcccCCccEEEcCCCcEEEEeCCCCCCcccccccccccCCCceEEEEeCCCCeeEEeecc--ccccceEEEcCCCC
Q 026118           87 QFNGSQLRFANDVIEASDGSLYFTVSSTKFTPAEYYLDLVSGEPHGVLLKYDPSTNQTSLVLDG--LYFANGVALSEDER  164 (243)
Q Consensus        87 ~~~~~~~~~~~~l~~d~~G~l~v~~~~~~~~~~~~~~~~~~~~~~g~v~~~~~~~~~~~~~~~~--~~~~~gi~~~~dg~  164 (243)
                         +. ..-++.|.+-|+|.-+.+-+..               ..-++|-+..+ .++..+...  ....++++|+.-|+
T Consensus       227 ---gh-esDINsv~ffP~G~afatGSDD---------------~tcRlyDlRaD-~~~a~ys~~~~~~gitSv~FS~SGR  286 (343)
T KOG0286|consen  227 ---GH-ESDINSVRFFPSGDAFATGSDD---------------ATCRLYDLRAD-QELAVYSHDSIICGITSVAFSKSGR  286 (343)
T ss_pred             ---cc-ccccceEEEccCCCeeeecCCC---------------ceeEEEeecCC-cEEeeeccCcccCCceeEEEccccc
Confidence               11 2457888999999999885431               12244444443 455554332  34468899999999


Q ss_pred             EEEEEEcCCCeEEEEEeecCCCcceEEeccCCCCCCCceEECCCCCE
Q 026118          165 FLVVCESWKFRCVKHFLKVSGRTDREIFIDNLPGGPDNVNLARDGSF  211 (243)
Q Consensus       165 ~l~v~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~i~~d~~G~l  211 (243)
                      .||.. ..+..+.++|.-..  .....+. +-.++...+.+.+||..
T Consensus       287 lLfag-y~d~~c~vWDtlk~--e~vg~L~-GHeNRvScl~~s~DG~a  329 (343)
T KOG0286|consen  287 LLFAG-YDDFTCNVWDTLKG--ERVGVLA-GHENRVSCLGVSPDGMA  329 (343)
T ss_pred             EEEee-ecCCceeEeecccc--ceEEEee-ccCCeeEEEEECCCCcE
Confidence            66655 56678888885432  1112222 33446777888888853

>KOG1520 consensus Predicted alkaloid synthase/Surface mucin Hemomucin [General function prediction only]

Probab=98.01  E-value=0.00012  Score=59.80  Aligned_cols=138  Identities=18%  Similarity=0.266  Sum_probs=87.8

Q ss_pred             ccCCcccEEEcCCC-cEEEEeCCCcEEEEccCCceeEeccc--CCc----cccceEEccCCCEEEEEeCCC---------
Q 026118            8 IVNHPEDVSVDGNG-VLYTATGDGWIKRMHPNGTWEDWHQV--GSQ----SLLGLTTTKENNVIIVCDSQQ---------   71 (243)
Q Consensus         8 ~~~~p~~i~~d~~g-~l~~~~~~~~i~~~~~~g~~~~~~~~--~~~----~~~~i~~~~~g~l~~v~~~~~---------   71 (243)
                      .+.+|-+|+++..| .||+++.--+++.+++.|........  .+.    .+ ++.++++|.+ |+++...         
T Consensus       113 ~CGRPLGl~f~~~ggdL~VaDAYlGL~~V~p~g~~a~~l~~~~~G~~~kf~N-~ldI~~~g~v-yFTDSSsk~~~rd~~~  190 (376)
T KOG1520|consen  113 LCGRPLGIRFDKKGGDLYVADAYLGLLKVGPEGGLAELLADEAEGKPFKFLN-DLDIDPEGVV-YFTDSSSKYDRRDFVF  190 (376)
T ss_pred             ccCCcceEEeccCCCeEEEEecceeeEEECCCCCcceeccccccCeeeeecC-ceeEcCCCeE-EEeccccccchhheEE
Confidence            36899999999765 99999966779999976544322111  121    24 7788888887 8876432         


Q ss_pred             ---------cEEEEe-cCC-cEEEEeccCCCcccCCccEEEcCCCcEEE-EeCCCCCCcccccccccccCCCceEEEEeC
Q 026118           72 ---------GLLKVS-EEG-VTVLVSQFNGSQLRFANDVIEASDGSLYF-TVSSTKFTPAEYYLDLVSGEPHGVLLKYDP  139 (243)
Q Consensus        72 ---------gl~~~~-~~g-~~~~~~~~~~~~~~~~~~l~~d~~G~l~v-~~~~~~~~~~~~~~~~~~~~~~g~v~~~~~  139 (243)
                               +++++| .+. .+++.     ....++||++.++|+...+ +...                 ..++.+|-.
T Consensus       191 a~l~g~~~GRl~~YD~~tK~~~VLl-----d~L~F~NGlaLS~d~sfvl~~Et~-----------------~~ri~rywi  248 (376)
T KOG1520|consen  191 AALEGDPTGRLFRYDPSTKVTKVLL-----DGLYFPNGLALSPDGSFVLVAETT-----------------TARIKRYWI  248 (376)
T ss_pred             eeecCCCccceEEecCcccchhhhh-----hcccccccccCCCCCCEEEEEeec-----------------cceeeeeEe
Confidence                     244554 222 22222     2356899999999987544 4221                 235666655


Q ss_pred             CC---CeeEEeecc-ccccceEEEcCCCCEEEEEE
Q 026118          140 ST---NQTSLVLDG-LYFANGVALSEDERFLVVCE  170 (243)
Q Consensus       140 ~~---~~~~~~~~~-~~~~~gi~~~~dg~~l~v~~  170 (243)
                      ++   |+.+.++.+ ...|.-|..+++|+ .||+-
T Consensus       249 ~g~k~gt~EvFa~~LPG~PDNIR~~~~G~-fWVal  282 (376)
T KOG1520|consen  249 KGPKAGTSEVFAEGLPGYPDNIRRDSTGH-FWVAL  282 (376)
T ss_pred             cCCccCchhhHhhcCCCCCcceeECCCCC-EEEEE
Confidence            43   333556654 35688899999998 88874

>KOG0266 consensus WD40 repeat-containing protein [General function prediction only]

Probab=98.01  E-value=0.0016  Score=56.30  Aligned_cols=151  Identities=14%  Similarity=0.161  Sum_probs=96.2

Q ss_pred             cCCcccEEEcCCCcEEEE-eCCCcEEEEcc-CC-c-eeEecccCCccccceEEccCCCEEEEEeCCCcEEEEe-cCC--c
Q 026118            9 VNHPEDVSVDGNGVLYTA-TGDGWIKRMHP-NG-T-WEDWHQVGSQSLLGLTTTKENNVIIVCDSQQGLLKVS-EEG--V   81 (243)
Q Consensus         9 ~~~p~~i~~d~~g~l~~~-~~~~~i~~~~~-~g-~-~~~~~~~~~~~~~~i~~~~~g~l~~v~~~~~gl~~~~-~~g--~   81 (243)
                      ...-..+++.++|...++ ..+..|..++. .. . ++.+.-...... +++|+++|+++..+..+.-+..++ .++  .
T Consensus       203 ~~~v~~~~fs~d~~~l~s~s~D~tiriwd~~~~~~~~~~l~gH~~~v~-~~~f~p~g~~i~Sgs~D~tvriWd~~~~~~~  281 (456)
T KOG0266|consen  203 TRGVSDVAFSPDGSYLLSGSDDKTLRIWDLKDDGRNLKTLKGHSTYVT-SVAFSPDGNLLVSGSDDGTVRIWDVRTGECV  281 (456)
T ss_pred             ccceeeeEECCCCcEEEEecCCceEEEeeccCCCeEEEEecCCCCceE-EEEecCCCCEEEEecCCCcEEEEeccCCeEE
Confidence            344567888899964444 47788888883 33 3 344432223334 899999998845555444466666 565  3


Q ss_pred             EEEEeccCCCcccCCccEEEcCCCcEEEEeCCCCCCcccccccccccCCCceEEEEeCCCCeeE--Eeecccc---ccce
Q 026118           82 TVLVSQFNGSQLRFANDVIEASDGSLYFTVSSTKFTPAEYYLDLVSGEPHGVLLKYDPSTNQTS--LVLDGLY---FANG  156 (243)
Q Consensus        82 ~~~~~~~~~~~~~~~~~l~~d~~G~l~v~~~~~~~~~~~~~~~~~~~~~~g~v~~~~~~~~~~~--~~~~~~~---~~~g  156 (243)
                      +.+...     ...+.++++.++|+++++.+                 ..+.|..+|..++...  .......   ....
T Consensus       282 ~~l~~h-----s~~is~~~f~~d~~~l~s~s-----------------~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~  339 (456)
T KOG0266|consen  282 RKLKGH-----SDGISGLAFSPDGNLLVSAS-----------------YDGTIRVWDLETGSKLCLKLLSGAENSAPVTS  339 (456)
T ss_pred             Eeeecc-----CCceEEEEECCCCCEEEEcC-----------------CCccEEEEECCCCceeeeecccCCCCCCceeE
Confidence            333221     23566789999999887742                 2467888999988732  2222222   2377


Q ss_pred             EEEcCCCCEEEEEEcCCCeEEEEEeec
Q 026118          157 VALSEDERFLVVCESWKFRCVKHFLKV  183 (243)
Q Consensus       157 i~~~~dg~~l~v~~~~~~~i~~~~~~~  183 (243)
                      +.|+|+++++++.. .++.+..+++..
T Consensus       340 ~~fsp~~~~ll~~~-~d~~~~~w~l~~  365 (456)
T KOG0266|consen  340 VQFSPNGKYLLSAS-LDRTLKLWDLRS  365 (456)
T ss_pred             EEECCCCcEEEEec-CCCeEEEEEccC
Confidence            89999999888774 456777777764

>PF05096 Glu_cyclase_2: Glutamine cyclotransferase; InterPro: IPR007788 This family of enzymes 2

Probab=98.00  E-value=0.0031  Score=49.64  Aligned_cols=175  Identities=10%  Similarity=0.097  Sum_probs=99.5

Q ss_pred             cccEEEcCCCcEEEEeC---CCcEEEEc-cCCceeEecccCCc--cccceEEccCCCEEEEEeCCCc-EEEEecCCcEEE
Q 026118           12 PEDVSVDGNGVLYTATG---DGWIKRMH-PNGTWEDWHQVGSQ--SLLGLTTTKENNVIIVCDSQQG-LLKVSEEGVTVL   84 (243)
Q Consensus        12 p~~i~~d~~g~l~~~~~---~~~i~~~~-~~g~~~~~~~~~~~--~~~~i~~~~~g~l~~v~~~~~g-l~~~~~~g~~~~   84 (243)
                      -+++.++.+|.||-++.   ...|.+++ .+|++.........  .. ||++-. +++ |.-++..+ .+.+|.+-.+.+
T Consensus        47 TQGL~~~~~g~LyESTG~yG~S~l~~~d~~tg~~~~~~~l~~~~FgE-Git~~~-d~l-~qLTWk~~~~f~yd~~tl~~~  123 (264)
T PF05096_consen   47 TQGLEFLDDGTLYESTGLYGQSSLRKVDLETGKVLQSVPLPPRYFGE-GITILG-DKL-YQLTWKEGTGFVYDPNTLKKI  123 (264)
T ss_dssp             EEEEEEEETTEEEEEECSTTEEEEEEEETTTSSEEEEEE-TTT--EE-EEEEET-TEE-EEEESSSSEEEEEETTTTEEE
T ss_pred             CccEEecCCCEEEEeCCCCCcEEEEEEECCCCcEEEEEECCccccce-eEEEEC-CEE-EEEEecCCeEEEEccccceEE
Confidence            45678888899998882   34688888 56765543222111  23 666643 356 99998876 456675443433


Q ss_pred             Ee-ccCCCcccCCccEEEcCCCcEEEEeCCCCCCcccccccccccCCCceEEEEeCCCCeeEEee---c---cccccceE
Q 026118           85 VS-QFNGSQLRFANDVIEASDGSLYFTVSSTKFTPAEYYLDLVSGEPHGVLLKYDPSTNQTSLVL---D---GLYFANGV  157 (243)
Q Consensus        85 ~~-~~~~~~~~~~~~l~~d~~G~l~v~~~~~~~~~~~~~~~~~~~~~~g~v~~~~~~~~~~~~~~---~---~~~~~~gi  157 (243)
                      .. ...    ..-.||+.| +..+|.+|.                  +..|+.+||++-+.....   .   .....|-|
T Consensus       124 ~~~~y~----~EGWGLt~d-g~~Li~SDG------------------S~~L~~~dP~~f~~~~~i~V~~~g~pv~~LNEL  180 (264)
T PF05096_consen  124 GTFPYP----GEGWGLTSD-GKRLIMSDG------------------SSRLYFLDPETFKEVRTIQVTDNGRPVSNLNEL  180 (264)
T ss_dssp             EEEE-S----SS--EEEEC-SSCEEEE-S------------------SSEEEEE-TTT-SEEEEEE-EETTEE---EEEE
T ss_pred             EEEecC----CcceEEEcC-CCEEEEECC------------------ccceEEECCcccceEEEEEEEECCEECCCcEeE
Confidence            32 122    234578754 346888863                  358999999876544321   1   12334667


Q ss_pred             EEcCCCCEEEEEEcCCCeEEEEEeecCCCcceEEec---c-----C----CCCCCCceEECCCC-CEEEE
Q 026118          158 ALSEDERFLVVCESWKFRCVKHFLKVSGRTDREIFI---D-----N----LPGGPDNVNLARDG-SFWIS  214 (243)
Q Consensus       158 ~~~~dg~~l~v~~~~~~~i~~~~~~~~~~~~~~~~~---~-----~----~~~~~~~i~~d~~G-~lwv~  214 (243)
                      .+- +|. +|.--..++.|.++|+..+.....--+.   +     .    ...-.+|||.|+++ ++||.
T Consensus       181 E~i-~G~-IyANVW~td~I~~Idp~tG~V~~~iDls~L~~~~~~~~~~~~~~dVLNGIAyd~~~~~l~vT  248 (264)
T PF05096_consen  181 EYI-NGK-IYANVWQTDRIVRIDPETGKVVGWIDLSGLRPEVGRDKSRQPDDDVLNGIAYDPETDRLFVT  248 (264)
T ss_dssp             EEE-TTE-EEEEETTSSEEEEEETTT-BEEEEEE-HHHHHHHTSTTST--TTS-EEEEEEETTTTEEEEE
T ss_pred             EEE-cCE-EEEEeCCCCeEEEEeCCCCeEEEEEEhhHhhhcccccccccccCCeeEeEeEeCCCCEEEEE
Confidence            774 665 8887778899999998764322211110   0     0    01235789998765 48884

3.2.5 from EC catalyse the cyclization of free L-glutamine and N-terminal glutaminyl residues in proteins to pyroglutamate (5-oxoproline) and pyroglutamyl residues respectively []. This family includes plant and bacterial enzymes and seems unrelated to the mammalian enzymes.; PDB: 3NOK_B 2FAW_A 2IWA_A 3NOM_A 3NOL_A 3MBR_X.

>KOG0315 consensus G-protein beta subunit-like protein (contains WD40 repeats) [General function prediction only]

Probab=97.96  E-value=0.0011  Score=51.11  Aligned_cols=152  Identities=15%  Similarity=0.122  Sum_probs=89.2

Q ss_pred             cEEEcCCC-cEEEEeCCCcEEEEcc-CCcee-EecccCCccccceEEccCCCEEEEEeCCCcEEEEe-cCC--cEEEEec
Q 026118           14 DVSVDGNG-VLYTATGDGWIKRMHP-NGTWE-DWHQVGSQSLLGLTTTKENNVIIVCDSQQGLLKVS-EEG--VTVLVSQ   87 (243)
Q Consensus        14 ~i~~d~~g-~l~~~~~~~~i~~~~~-~g~~~-~~~~~~~~~~~~i~~~~~g~l~~v~~~~~gl~~~~-~~g--~~~~~~~   87 (243)
                      +++..++. .|++++.+|.|..+|. +.... ........+..++++.+||.+|..++..+..|.++ .++  ..++...
T Consensus       129 ~vvlhpnQteLis~dqsg~irvWDl~~~~c~~~liPe~~~~i~sl~v~~dgsml~a~nnkG~cyvW~l~~~~~~s~l~P~  208 (311)
T KOG0315|consen  129 TVVLHPNQTELISGDQSGNIRVWDLGENSCTHELIPEDDTSIQSLTVMPDGSMLAAANNKGNCYVWRLLNHQTASELEPV  208 (311)
T ss_pred             eEEecCCcceEEeecCCCcEEEEEccCCccccccCCCCCcceeeEEEcCCCcEEEEecCCccEEEEEccCCCccccceEh
Confidence            45666654 6999999999999993 22211 11122223443889999999855555445677777 433  3333221


Q ss_pred             cCCC-cccCCccEEEcCCCcEEEEeCCCCCCcccccccccccCCCceEEEEeCCCC-eeEEeecc-ccccceEEEcCCCC
Q 026118           88 FNGS-QLRFANDVIEASDGSLYFTVSSTKFTPAEYYLDLVSGEPHGVLLKYDPSTN-QTSLVLDG-LYFANGVALSEDER  164 (243)
Q Consensus        88 ~~~~-~~~~~~~l~~d~~G~l~v~~~~~~~~~~~~~~~~~~~~~~g~v~~~~~~~~-~~~~~~~~-~~~~~gi~~~~dg~  164 (243)
                      ..-+ ...++-....+||+++.++.+.                 ...++.++.++- +++...++ ..+.=+.+||.||+
T Consensus       209 ~k~~ah~~~il~C~lSPd~k~lat~ss-----------------dktv~iwn~~~~~kle~~l~gh~rWvWdc~FS~dg~  271 (311)
T KOG0315|consen  209 HKFQAHNGHILRCLLSPDVKYLATCSS-----------------DKTVKIWNTDDFFKLELVLTGHQRWVWDCAFSADGE  271 (311)
T ss_pred             hheecccceEEEEEECCCCcEEEeecC-----------------CceEEEEecCCceeeEEEeecCCceEEeeeeccCcc
Confidence            1111 1234445578999988887543                 124444555433 44444433 34455789999999


Q ss_pred             EEEEEEcCCCeEEEEEeec
Q 026118          165 FLVVCESWKFRCVKHFLKV  183 (243)
Q Consensus       165 ~l~v~~~~~~~i~~~~~~~  183 (243)
                      ||+.+. .++....+++..
T Consensus       272 YlvTas-sd~~~rlW~~~~  289 (311)
T KOG0315|consen  272 YLVTAS-SDHTARLWDLSA  289 (311)
T ss_pred             EEEecC-CCCceeeccccc
Confidence            888775 446666666653

>KOG0282 consensus mRNA splicing factor [Function unknown]

Probab=97.95  E-value=0.00013  Score=60.70  Aligned_cols=183  Identities=14%  Similarity=0.130  Sum_probs=108.1

Q ss_pred             cEEEcCCCcE-EEEeCCCcEEEEc-cCCceeEecccCCccccceEEccCC-CEEEEEeCCCcEEEEe-cCC--cEEEEec
Q 026118           14 DVSVDGNGVL-YTATGDGWIKRMH-PNGTWEDWHQVGSQSLLGLTTTKEN-NVIIVCDSQQGLLKVS-EEG--VTVLVSQ   87 (243)
Q Consensus        14 ~i~~d~~g~l-~~~~~~~~i~~~~-~~g~~~~~~~~~~~~~~~i~~~~~g-~l~~v~~~~~gl~~~~-~~g--~~~~~~~   87 (243)
                      .+++..+|+= ..+..+..|..+| .+|+...-......|. .+-+.|++ ++++++...+.|..+| .++  +..+.. 
T Consensus       263 d~~~s~~g~~fLS~sfD~~lKlwDtETG~~~~~f~~~~~~~-cvkf~pd~~n~fl~G~sd~ki~~wDiRs~kvvqeYd~-  340 (503)
T KOG0282|consen  263 DASFNNCGTSFLSASFDRFLKLWDTETGQVLSRFHLDKVPT-CVKFHPDNQNIFLVGGSDKKIRQWDIRSGKVVQEYDR-  340 (503)
T ss_pred             hhhccccCCeeeeeecceeeeeeccccceEEEEEecCCCce-eeecCCCCCcEEEEecCCCcEEEEeccchHHHHHHHh-
Confidence            4566666753 3444677777888 5676554322223344 78888888 7745665566799999 776  222221 


Q ss_pred             cCCCcccCCccEEEcCCCcEEEEeCCCCCCcccccccccccCCCceEEEEeCCCCeeEEee-cc-ccccceEEEcCCCCE
Q 026118           88 FNGSQLRFANDVIEASDGSLYFTVSSTKFTPAEYYLDLVSGEPHGVLLKYDPSTNQTSLVL-DG-LYFANGVALSEDERF  165 (243)
Q Consensus        88 ~~~~~~~~~~~l~~d~~G~l~v~~~~~~~~~~~~~~~~~~~~~~g~v~~~~~~~~~~~~~~-~~-~~~~~gi~~~~dg~~  165 (243)
                          ....++.+.+-++|+-+++++..                 ..+...+-.......+. .. ....-.+..+|.++ 
T Consensus       341 ----hLg~i~~i~F~~~g~rFissSDd-----------------ks~riWe~~~~v~ik~i~~~~~hsmP~~~~~P~~~-  398 (503)
T KOG0282|consen  341 ----HLGAILDITFVDEGRRFISSSDD-----------------KSVRIWENRIPVPIKNIADPEMHTMPCLTLHPNGK-  398 (503)
T ss_pred             ----hhhheeeeEEccCCceEeeeccC-----------------ccEEEEEcCCCccchhhcchhhccCcceecCCCCC-
Confidence                23456778888999999986541                 23333333323322221 11 11223588899998 


Q ss_pred             EEEEEcCCCeEEEEEeecC-CCcceEEecc-CCCCCCCceEECCCCCEEEEEecCCc
Q 026118          166 LVVCESWKFRCVKHFLKVS-GRTDREIFID-NLPGGPDNVNLARDGSFWISIIKMDP  220 (243)
Q Consensus       166 l~v~~~~~~~i~~~~~~~~-~~~~~~~~~~-~~~~~~~~i~~d~~G~lwv~~~~~~~  220 (243)
                      .+++....+.|+.|..... .+...+.|.. ...|++-.+.+++||+..++....+.
T Consensus       399 ~~~aQs~dN~i~ifs~~~~~r~nkkK~feGh~vaGys~~v~fSpDG~~l~SGdsdG~  455 (503)
T KOG0282|consen  399 WFAAQSMDNYIAIFSTVPPFRLNKKKRFEGHSVAGYSCQVDFSPDGRTLCSGDSDGK  455 (503)
T ss_pred             eehhhccCceEEEEecccccccCHhhhhcceeccCceeeEEEcCCCCeEEeecCCcc
Confidence            6667677788988876532 3333333321 24566777888888887666655443

>KOG0279 consensus G protein beta subunit-like protein [Signal transduction mechanisms]

Probab=97.95  E-value=0.0041  Score=48.67  Aligned_cols=182  Identities=12%  Similarity=0.109  Sum_probs=110.6

Q ss_pred             CcccEEEcCCCcEEEE-eCCCcEEEEcc-CCc-eeEecccCCccccceEEccCCCEEEEEeCCC-cEEEEe-cCCcEE-E
Q 026118           11 HPEDVSVDGNGVLYTA-TGDGWIKRMHP-NGT-WEDWHQVGSQSLLGLTTTKENNVIIVCDSQQ-GLLKVS-EEGVTV-L   84 (243)
Q Consensus        11 ~p~~i~~d~~g~l~~~-~~~~~i~~~~~-~g~-~~~~~~~~~~~~~~i~~~~~g~l~~v~~~~~-gl~~~~-~~g~~~-~   84 (243)
                      .-..++..+||...++ ..++.++.+|. .|+ ...+.-...... ++++++|.+. .+..... -+..++ ..+.+. +
T Consensus        65 ~v~dv~~s~dg~~alS~swD~~lrlWDl~~g~~t~~f~GH~~dVl-sva~s~dn~q-ivSGSrDkTiklwnt~g~ck~t~  142 (315)
T KOG0279|consen   65 FVSDVVLSSDGNFALSASWDGTLRLWDLATGESTRRFVGHTKDVL-SVAFSTDNRQ-IVSGSRDKTIKLWNTLGVCKYTI  142 (315)
T ss_pred             EecceEEccCCceEEeccccceEEEEEecCCcEEEEEEecCCceE-EEEecCCCce-eecCCCcceeeeeeecccEEEEE
Confidence            3456777788876554 48888899984 443 233333233455 8999999887 4544333 455666 333222 2


Q ss_pred             EeccCCCcccCCccEEEcCCC-c-EEEEeCCCCCCcccccccccccCCCceEEEEeCCCCeeEEe-eccccccceEEEcC
Q 026118           85 VSQFNGSQLRFANDVIEASDG-S-LYFTVSSTKFTPAEYYLDLVSGEPHGVLLKYDPSTNQTSLV-LDGLYFANGVALSE  161 (243)
Q Consensus        85 ~~~~~~~~~~~~~~l~~d~~G-~-l~v~~~~~~~~~~~~~~~~~~~~~~g~v~~~~~~~~~~~~~-~~~~~~~~gi~~~~  161 (243)
                      ..   ......+.++.+.|.- + +++..+                 ....|-..|.++.+++.. .......+.++++|
T Consensus       143 ~~---~~~~~WVscvrfsP~~~~p~Ivs~s-----------------~DktvKvWnl~~~~l~~~~~gh~~~v~t~~vSp  202 (315)
T KOG0279|consen  143 HE---DSHREWVSCVRFSPNESNPIIVSAS-----------------WDKTVKVWNLRNCQLRTTFIGHSGYVNTVTVSP  202 (315)
T ss_pred             ec---CCCcCcEEEEEEcCCCCCcEEEEcc-----------------CCceEEEEccCCcchhhccccccccEEEEEECC
Confidence            21   1113567899999964 4 444422                 223455667776666543 33445678899999


Q ss_pred             CCCEEEEEEcCCCeEEEEEeecCCCcceEEeccCCCCCCCceEECCCCCEEEEEecCCc
Q 026118          162 DERFLVVCESWKFRCVKHFLKVSGRTDREIFIDNLPGGPDNVNLARDGSFWISIIKMDP  220 (243)
Q Consensus       162 dg~~l~v~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~i~~d~~G~lwv~~~~~~~  220 (243)
                      ||. +..+...++.++.+|++..  .+.+.+.  ...-...+++.++ +.|++..-+.+
T Consensus       203 DGs-lcasGgkdg~~~LwdL~~~--k~lysl~--a~~~v~sl~fspn-rywL~~at~~s  255 (315)
T KOG0279|consen  203 DGS-LCASGGKDGEAMLWDLNEG--KNLYSLE--AFDIVNSLCFSPN-RYWLCAATATS  255 (315)
T ss_pred             CCC-EEecCCCCceEEEEEccCC--ceeEecc--CCCeEeeEEecCC-ceeEeeccCCc
Confidence            999 8887777788999998743  2222221  1123456888876 67877655543

>COG4946 Uncharacterized protein related to the periplasmic component of the Tol biopolymer transport system [Function unknown]

Probab=97.95  E-value=0.0006  Score=57.05  Aligned_cols=131  Identities=13%  Similarity=0.160  Sum_probs=84.0

Q ss_pred             EEEEeCCC-cEEEEcc-CCceeEecccCCccccceEEccCCCEEEEEeCCCcEEEEe-cCC-cEEEEeccCCCcccCCcc
Q 026118           23 LYTATGDG-WIKRMHP-NGTWEDWHQVGSQSLLGLTTTKENNVIIVCDSQQGLLKVS-EEG-VTVLVSQFNGSQLRFAND   98 (243)
Q Consensus        23 l~~~~~~~-~i~~~~~-~g~~~~~~~~~~~~~~~i~~~~~g~l~~v~~~~~gl~~~~-~~g-~~~~~~~~~~~~~~~~~~   98 (243)
                      +.+++.+| .+-.++. .+.++++....++.. .+..+++|+.+.+++...-++.++ .+| ++.+.....    ..+.+
T Consensus       374 ~vigt~dgD~l~iyd~~~~e~kr~e~~lg~I~-av~vs~dGK~~vvaNdr~el~vididngnv~~idkS~~----~lItd  448 (668)
T COG4946         374 DVIGTNDGDKLGIYDKDGGEVKRIEKDLGNIE-AVKVSPDGKKVVVANDRFELWVIDIDNGNVRLIDKSEY----GLITD  448 (668)
T ss_pred             eEEeccCCceEEEEecCCceEEEeeCCccceE-EEEEcCCCcEEEEEcCceEEEEEEecCCCeeEeccccc----ceeEE
Confidence            34444333 5666663 455677766666667 889999999757777666789999 888 666543322    23456


Q ss_pred             EEEcCCCcEEEEeCCCCCCcccccccccccCCCceEEEEeCCCCeeEEeeccccccceEEEcCCCCEEEEEEc
Q 026118           99 VIEASDGSLYFTVSSTKFTPAEYYLDLVSGEPHGVLLKYDPSTNQTSLVLDGLYFANGVALSEDERFLVVCES  171 (243)
Q Consensus        99 l~~d~~G~l~v~~~~~~~~~~~~~~~~~~~~~~g~v~~~~~~~~~~~~~~~~~~~~~gi~~~~dg~~l~v~~~  171 (243)
                      +++.++++ |++     |+       ..++.....|-.+|.++++.-.+.+....-.+.+|+||+++||....
T Consensus       449 f~~~~nsr-~iA-----Ya-------fP~gy~tq~Iklydm~~~Kiy~vTT~ta~DfsPaFD~d~ryLYfLs~  508 (668)
T COG4946         449 FDWHPNSR-WIA-----YA-------FPEGYYTQSIKLYDMDGGKIYDVTTPTAYDFSPAFDPDGRYLYFLSA  508 (668)
T ss_pred             EEEcCCce-eEE-----Ee-------cCcceeeeeEEEEecCCCeEEEecCCcccccCcccCCCCcEEEEEec
Confidence            67777765 444     11       11122233566788887776666555555566799999999998743

>KOG0266 consensus WD40 repeat-containing protein [General function prediction only]

Probab=97.94  E-value=0.0031  Score=54.50  Aligned_cols=186  Identities=16%  Similarity=0.154  Sum_probs=105.5

Q ss_pred             cEEEcCCCcEEEEe-CCCcEEEEcc-CCc--eeEecccCCccccceEEccCCCEEEEEeCCCcEEEEe-cCC---cEEEE
Q 026118           14 DVSVDGNGVLYTAT-GDGWIKRMHP-NGT--WEDWHQVGSQSLLGLTTTKENNVIIVCDSQQGLLKVS-EEG---VTVLV   85 (243)
Q Consensus        14 ~i~~d~~g~l~~~~-~~~~i~~~~~-~g~--~~~~~~~~~~~~~~i~~~~~g~l~~v~~~~~gl~~~~-~~g---~~~~~   85 (243)
                      ++.+.++|...++. .++.+..++. .++  ...-..........+++.++|+++.-+..+..+..++ ...   .+.+.
T Consensus       164 ~~~fs~~g~~l~~~~~~~~i~~~~~~~~~~~~~~~l~~h~~~v~~~~fs~d~~~l~s~s~D~tiriwd~~~~~~~~~~l~  243 (456)
T KOG0266|consen  164 CVDFSPDGRALAAASSDGLIRIWKLEGIKSNLLRELSGHTRGVSDVAFSPDGSYLLSGSDDKTLRIWDLKDDGRNLKTLK  243 (456)
T ss_pred             EEEEcCCCCeEEEccCCCcEEEeecccccchhhccccccccceeeeEECCCCcEEEEecCCceEEEeeccCCCeEEEEec
Confidence            35566888765444 5555555553 222  1111111112222789999998733333333455555 333   23322


Q ss_pred             eccCCCcccCCccEEEcCCCcEEEEeCCCCCCcccccccccccCCCceEEEEeCCCCeeEEeec-cccccceEEEcCCCC
Q 026118           86 SQFNGSQLRFANDVIEASDGSLYFTVSSTKFTPAEYYLDLVSGEPHGVLLKYDPSTNQTSLVLD-GLYFANGVALSEDER  164 (243)
Q Consensus        86 ~~~~~~~~~~~~~l~~d~~G~l~v~~~~~~~~~~~~~~~~~~~~~~g~v~~~~~~~~~~~~~~~-~~~~~~gi~~~~dg~  164 (243)
                          + ....+.++++.++|++.++.+.                 .+.|...|..+++...... ......+++|+++++
T Consensus       244 ----g-H~~~v~~~~f~p~g~~i~Sgs~-----------------D~tvriWd~~~~~~~~~l~~hs~~is~~~f~~d~~  301 (456)
T KOG0266|consen  244 ----G-HSTYVTSVAFSPDGNLLVSGSD-----------------DGTVRIWDVRTGECVRKLKGHSDGISGLAFSPDGN  301 (456)
T ss_pred             ----C-CCCceEEEEecCCCCEEEEecC-----------------CCcEEEEeccCCeEEEeeeccCCceEEEEECCCCC
Confidence                1 1246689999999988887433                 3467777777776665543 344667899999999


Q ss_pred             EEEEEEcCCCeEEEEEeecCCCcceEEeccCCCC-CCCceEECCCCC-EEEEEecCCchh
Q 026118          165 FLVVCESWKFRCVKHFLKVSGRTDREIFIDNLPG-GPDNVNLARDGS-FWISIIKMDPKG  222 (243)
Q Consensus       165 ~l~v~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~-~~~~i~~d~~G~-lwv~~~~~~~~~  222 (243)
                      .|+.+ ..++.|..||...+...-...+...... -...+.++++|. ++++...+....
T Consensus       302 ~l~s~-s~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~fsp~~~~ll~~~~d~~~~~  360 (456)
T KOG0266|consen  302 LLVSA-SYDGTIRVWDLETGSKLCLKLLSGAENSAPVTSVQFSPNGKYLLSASLDRTLKL  360 (456)
T ss_pred             EEEEc-CCCccEEEEECCCCceeeeecccCCCCCCceeEEEECCCCcEEEEecCCCeEEE
Confidence            66655 6688999999876432101122111111 125577788887 455443333333

>KOG0278 consensus Serine/threonine kinase receptor-associated protein [Lipid transport and metabolism]

Probab=97.93  E-value=0.0019  Score=49.91  Aligned_cols=139  Identities=11%  Similarity=0.061  Sum_probs=87.0

Q ss_pred             CCcEEEEeCCCcEEEEc-cCCce-eEecccCCccccceEEccCCCEEEEEeCCCcEEEEecCCcEEEEeccCCCcccCCc
Q 026118           20 NGVLYTATGDGWIKRMH-PNGTW-EDWHQVGSQSLLGLTTTKENNVIIVCDSQQGLLKVSEEGVTVLVSQFNGSQLRFAN   97 (243)
Q Consensus        20 ~g~l~~~~~~~~i~~~~-~~g~~-~~~~~~~~~~~~~i~~~~~g~l~~v~~~~~gl~~~~~~g~~~~~~~~~~~~~~~~~   97 (243)
                      |..+..+..++.|+.+| ..|+. ..+..  ..+..++-++.+|++ .....+.+|..+++..+..+.. ...+  -.+.
T Consensus       155 D~~iLSSadd~tVRLWD~rTgt~v~sL~~--~s~VtSlEvs~dG~i-lTia~gssV~Fwdaksf~~lKs-~k~P--~nV~  228 (334)
T KOG0278|consen  155 DKCILSSADDKTVRLWDHRTGTEVQSLEF--NSPVTSLEVSQDGRI-LTIAYGSSVKFWDAKSFGLLKS-YKMP--CNVE  228 (334)
T ss_pred             CceEEeeccCCceEEEEeccCcEEEEEec--CCCCcceeeccCCCE-EEEecCceeEEeccccccceee-ccCc--cccc
Confidence            44555555778888888 45553 33332  344448999999998 4444456677777443332221 1111  1222


Q ss_pred             cEEEcCCCcEEEEeCCCCCCcccccccccccCCCceEEEEeCCCCeeEEee-ccc-cccceEEEcCCCCEEEEEEcCCCe
Q 026118           98 DVIEASDGSLYFTVSSTKFTPAEYYLDLVSGEPHGVLLKYDPSTNQTSLVL-DGL-YFANGVALSEDERFLVVCESWKFR  175 (243)
Q Consensus        98 ~l~~d~~G~l~v~~~~~~~~~~~~~~~~~~~~~~g~v~~~~~~~~~~~~~~-~~~-~~~~gi~~~~dg~~l~v~~~~~~~  175 (243)
                      +.-..|+..+||+..                 ....+|+||-.+++-+-.. .+. .-...+.|+|||. +|.+.+.++.
T Consensus       229 SASL~P~k~~fVaGg-----------------ed~~~~kfDy~TgeEi~~~nkgh~gpVhcVrFSPdGE-~yAsGSEDGT  290 (334)
T KOG0278|consen  229 SASLHPKKEFFVAGG-----------------EDFKVYKFDYNTGEEIGSYNKGHFGPVHCVRFSPDGE-LYASGSEDGT  290 (334)
T ss_pred             cccccCCCceEEecC-----------------cceEEEEEeccCCceeeecccCCCCceEEEEECCCCc-eeeccCCCce
Confidence            334567778999832                 3457999999988654432 222 3346799999999 9999888888


Q ss_pred             EEEEEee
Q 026118          176 CVKHFLK  182 (243)
Q Consensus       176 i~~~~~~  182 (243)
                      |..+...
T Consensus       291 irlWQt~  297 (334)
T KOG0278|consen  291 IRLWQTT  297 (334)
T ss_pred             EEEEEec
Confidence            8777654

>PF13360 PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A 3Q54_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A

Probab=97.92  E-value=0.0053  Score=47.81  Aligned_cols=172  Identities=19%  Similarity=0.186  Sum_probs=91.0

Q ss_pred             EEcCCCcEEEEeCCCcEEEEcc-CCceeEecccCCccccceEEccCCCEEEEEeCCCcEEEEe-cCC-cEEE-Eecc-CC
Q 026118           16 SVDGNGVLYTATGDGWIKRMHP-NGTWEDWHQVGSQSLLGLTTTKENNVIIVCDSQQGLLKVS-EEG-VTVL-VSQF-NG   90 (243)
Q Consensus        16 ~~d~~g~l~~~~~~~~i~~~~~-~g~~~~~~~~~~~~~~~i~~~~~g~l~~v~~~~~gl~~~~-~~g-~~~~-~~~~-~~   90 (243)
                      ++..++.+|+++.++.|+.+|. +|+...-... ..+......-.++.+ |++...+.++.+| .+| .... .... +.
T Consensus        32 ~~~~~~~v~~~~~~~~l~~~d~~tG~~~W~~~~-~~~~~~~~~~~~~~v-~v~~~~~~l~~~d~~tG~~~W~~~~~~~~~  109 (238)
T PF13360_consen   32 AVPDGGRVYVASGDGNLYALDAKTGKVLWRFDL-PGPISGAPVVDGGRV-YVGTSDGSLYALDAKTGKVLWSIYLTSSPP  109 (238)
T ss_dssp             EEEETTEEEEEETTSEEEEEETTTSEEEEEEEC-SSCGGSGEEEETTEE-EEEETTSEEEEEETTTSCEEEEEEE-SSCT
T ss_pred             EEEeCCEEEEEcCCCEEEEEECCCCCEEEEeec-cccccceeeeccccc-ccccceeeeEecccCCcceeeeeccccccc
Confidence            4446789999998899999994 7875433222 222212223344556 8887666799999 888 4332 1211 11


Q ss_pred             CcccCCccEEEcCCCcEEEEeCCCCCCcccccccccccCCCceEEEEeCCCCeeEEeecccc--c----------cceEE
Q 026118           91 SQLRFANDVIEASDGSLYFTVSSTKFTPAEYYLDLVSGEPHGVLLKYDPSTNQTSLVLDGLY--F----------ANGVA  158 (243)
Q Consensus        91 ~~~~~~~~l~~d~~G~l~v~~~~~~~~~~~~~~~~~~~~~~g~v~~~~~~~~~~~~~~~~~~--~----------~~gi~  158 (243)
                      ..........++ .+.++++..                  .+.|+.+|+++|+.........  .          ...+.
T Consensus       110 ~~~~~~~~~~~~-~~~~~~~~~------------------~g~l~~~d~~tG~~~w~~~~~~~~~~~~~~~~~~~~~~~~  170 (238)
T PF13360_consen  110 AGVRSSSSPAVD-GDRLYVGTS------------------SGKLVALDPKTGKLLWKYPVGEPRGSSPISSFSDINGSPV  170 (238)
T ss_dssp             CSTB--SEEEEE-TTEEEEEET------------------CSEEEEEETTTTEEEEEEESSTT-SS--EEEETTEEEEEE
T ss_pred             cccccccCceEe-cCEEEEEec------------------cCcEEEEecCCCcEEEEeecCCCCCCcceeeecccccceE
Confidence            111122223333 455777642                  3689999999998754322111  0          12233


Q ss_pred             EcCCCCEEEEEEcCCCeEEEEEeecCCCcceEEeccCCCCCCCceEECCCCCEEEEEe
Q 026118          159 LSEDERFLVVCESWKFRCVKHFLKVSGRTDREIFIDNLPGGPDNVNLARDGSFWISII  216 (243)
Q Consensus       159 ~~~dg~~l~v~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~i~~d~~G~lwv~~~  216 (243)
                      ++ ++ .+|++... +.+..++...+.    ..+... ...+..+....++.||+.+.
T Consensus       171 ~~-~~-~v~~~~~~-g~~~~~d~~tg~----~~w~~~-~~~~~~~~~~~~~~l~~~~~  220 (238)
T PF13360_consen  171 IS-DG-RVYVSSGD-GRVVAVDLATGE----KLWSKP-ISGIYSLPSVDGGTLYVTSS  220 (238)
T ss_dssp             CC-TT-EEEEECCT-SSEEEEETTTTE----EEEEEC-SS-ECECEECCCTEEEEEET
T ss_pred             EE-CC-EEEEEcCC-CeEEEEECCCCC----EEEEec-CCCccCCceeeCCEEEEEeC
Confidence            33 44 58888643 446666655432    123111 22223323345566777773

...

>KOG2106 consensus Uncharacterized conserved protein, contains HELP and WD40 domains [Function unknown]

Probab=97.90  E-value=0.0041  Score=52.51  Aligned_cols=180  Identities=15%  Similarity=0.065  Sum_probs=101.2

Q ss_pred             cCCcccEEEcCCCcEEEEeCCCcEEEEccCCceeEecccCCccccceEEccCCCEEEEEeCCC-cEEEEecCCcEEEEec
Q 026118            9 VNHPEDVSVDGNGVLYTATGDGWIKRMHPNGTWEDWHQVGSQSLLGLTTTKENNVIIVCDSQQ-GLLKVSEEGVTVLVSQ   87 (243)
Q Consensus         9 ~~~p~~i~~d~~g~l~~~~~~~~i~~~~~~g~~~~~~~~~~~~~~~i~~~~~g~l~~v~~~~~-gl~~~~~~g~~~~~~~   87 (243)
                      +..++.|+.... .||+++..+.|..=+....+.......+.-+++++..++.++ +++-... .+..++...... ...
T Consensus       329 ~G~iRtv~e~~~-di~vGTtrN~iL~Gt~~~~f~~~v~gh~delwgla~hps~~q-~~T~gqdk~v~lW~~~k~~w-t~~  405 (626)
T KOG2106|consen  329 FGPIRTVAEGKG-DILVGTTRNFILQGTLENGFTLTVQGHGDELWGLATHPSKNQ-LLTCGQDKHVRLWNDHKLEW-TKI  405 (626)
T ss_pred             cCCeeEEecCCC-cEEEeeccceEEEeeecCCceEEEEecccceeeEEcCCChhh-eeeccCcceEEEccCCceeE-EEE
Confidence            345566666543 399998766666555333332222222334449999998888 5544334 454554322111 111


Q ss_pred             cCCCcccCCccEEEcCCCcEEEEeCCCCCCcccccccccccCCCceEEEEeCCCCeeEEeeccccccceEEEcCCCCEEE
Q 026118           88 FNGSQLRFANDVIEASDGSLYFTVSSTKFTPAEYYLDLVSGEPHGVLLKYDPSTNQTSLVLDGLYFANGVALSEDERFLV  167 (243)
Q Consensus        88 ~~~~~~~~~~~l~~d~~G~l~v~~~~~~~~~~~~~~~~~~~~~~g~v~~~~~~~~~~~~~~~~~~~~~gi~~~~dg~~l~  167 (243)
                      +.    ....++.++|.|.+.+++                  ..|..+.+|.++..+..+..+....+-+.++|+|.+|-
T Consensus       406 ~~----d~~~~~~fhpsg~va~Gt------------------~~G~w~V~d~e~~~lv~~~~d~~~ls~v~ysp~G~~lA  463 (626)
T KOG2106|consen  406 IE----DPAECADFHPSGVVAVGT------------------ATGRWFVLDTETQDLVTIHTDNEQLSVVRYSPDGAFLA  463 (626)
T ss_pred             ec----CceeEeeccCcceEEEee------------------ccceEEEEecccceeEEEEecCCceEEEEEcCCCCEEE
Confidence            11    123466788989766664                  34677888988766555555544456789999999777


Q ss_pred             EEEcCCCeEEEEEeecCCCcceEEeccCCCCCCCceEECCCCCEEEEE
Q 026118          168 VCESWKFRCVKHFLKVSGRTDREIFIDNLPGGPDNVNLARDGSFWISI  215 (243)
Q Consensus       168 v~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~i~~d~~G~lwv~~  215 (243)
                      ++ +.++.|+.|..+.+... .............-+..+.|++..++.
T Consensus       464 vg-s~d~~iyiy~Vs~~g~~-y~r~~k~~gs~ithLDwS~Ds~~~~~~  509 (626)
T KOG2106|consen  464 VG-SHDNHIYIYRVSANGRK-YSRVGKCSGSPITHLDWSSDSQFLVSN  509 (626)
T ss_pred             Ee-cCCCeEEEEEECCCCcE-EEEeeeecCceeEEeeecCCCceEEec
Confidence            77 46788999888743211 111110001122335556666665543

>cd00216 PQQ_DH Dehydrogenases with pyrrolo-quinoline quinone (PQQ) as cofactor, like ethanol, methanol, and membrane bound glucose dehydrogenases

Probab=97.89  E-value=0.0041  Score=54.18  Aligned_cols=197  Identities=11%  Similarity=0.065  Sum_probs=101.1

Q ss_pred             cEEEcC-CCcEEEEeCCC------------------cEEEEc-cCCceeEecccCCc------cccc-eEE---ccCCC-
Q 026118           14 DVSVDG-NGVLYTATGDG------------------WIKRMH-PNGTWEDWHQVGSQ------SLLG-LTT---TKENN-   62 (243)
Q Consensus        14 ~i~~d~-~g~l~~~~~~~------------------~i~~~~-~~g~~~~~~~~~~~------~~~~-i~~---~~~g~-   62 (243)
                      +.++|. ++.+|+++.++                  .|+.+| .+|+..-.......      ..+. +..   +.+|. 
T Consensus       221 ~pa~d~~~g~V~vg~~~g~~~~~~~~~~~~~~~~~~~l~Ald~~tG~~~W~~~~~~~~~~~~~~~s~p~~~~~~~~~g~~  300 (488)
T cd00216         221 SPTYDPKTNLVYVGTGNGSPWNWGGRRTPGDNLYTDSIVALDADTGKVKWFYQTTPHDLWDYDGPNQPSLADIKPKDGKP  300 (488)
T ss_pred             CeeEeCCCCEEEEECCCCCCCccCCccCCCCCCceeeEEEEcCCCCCEEEEeeCCCCCCcccccCCCCeEEeccccCCCe
Confidence            367774 67899997543                  699999 56765533211110      0001 111   12343 


Q ss_pred             --EEEEEeCCCcEEEEe-cCCcEEEEeccCCCcccCCccEEEcCCCcEEEEeCCCCCCcccccccccccCCCceEEEEeC
Q 026118           63 --VIIVCDSQQGLLKVS-EEGVTVLVSQFNGSQLRFANDVIEASDGSLYFTVSSTKFTPAEYYLDLVSGEPHGVLLKYDP  139 (243)
Q Consensus        63 --l~~v~~~~~gl~~~~-~~g~~~~~~~~~~~~~~~~~~l~~d~~G~l~v~~~~~~~~~~~~~~~~~~~~~~g~v~~~~~  139 (243)
                        +++++.....++.+| .+|.........      ..+++.++ +.+|+.......+..............+.|+.+|.
T Consensus       301 ~~~V~~g~~~G~l~ald~~tG~~~W~~~~~------~~~~~~~~-~~vyv~~~~~~~~~~~~~~~~~~~~~~G~l~AlD~  373 (488)
T cd00216         301 VPAIVHAPKNGFFYVLDRTTGKLISARPEV------EQPMAYDP-GLVYLGAFHIPLGLPPQKKKRCKKPGKGGLAALDP  373 (488)
T ss_pred             eEEEEEECCCceEEEEECCCCcEeeEeEee------ccccccCC-ceEEEccccccccCcccccCCCCCCCceEEEEEeC
Confidence              447776556699999 788222221111      11234454 67777532100000000000001124578999999


Q ss_pred             CCCeeEEeeccc----------cc-cceEEEcCCCCEEEEEEcCCCeEEEEEeecCCCcceEEeccCCCCCCCceEECCC
Q 026118          140 STNQTSLVLDGL----------YF-ANGVALSEDERFLVVCESWKFRCVKHFLKVSGRTDREIFIDNLPGGPDNVNLARD  208 (243)
Q Consensus       140 ~~~~~~~~~~~~----------~~-~~gi~~~~dg~~l~v~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~i~~d~~  208 (243)
                      .+|+........          .. ...++.  .++.+|+.+ .++.|+.+|.+++..-....+.......|  +....+
T Consensus       374 ~tG~~~W~~~~~~~~~~~~~g~~~~~~~~~~--~g~~v~~g~-~dG~l~ald~~tG~~lW~~~~~~~~~a~P--~~~~~~  448 (488)
T cd00216         374 KTGKVVWEKREGTIRDSWNIGFPHWGGSLAT--AGNLVFAGA-ADGYFRAFDATTGKELWKFRTPSGIQATP--MTYEVN  448 (488)
T ss_pred             CCCcEeeEeeCCccccccccCCcccCcceEe--cCCeEEEEC-CCCeEEEEECCCCceeeEEECCCCceEcC--EEEEeC
Confidence            998765432211          01 112333  345588875 57899999987653322222211111123  555668


Q ss_pred             CCEEEEEecCCchh
Q 026118          209 GSFWISIIKMDPKG  222 (243)
Q Consensus       209 G~lwv~~~~~~~~~  222 (243)
                      |++||++..++.+.
T Consensus       449 g~~yv~~~~g~~~~  462 (488)
T cd00216         449 GKQYVGVMVGGGGS  462 (488)
T ss_pred             CEEEEEEEecCCcc
Confidence            99999999886543

The alignment model contains an 8-bladed beta-propeller.

>KOG0263 consensus Transcription initiation factor TFIID, subunit TAF5 (also component of histone acetyltransferase SAGA) [Transcription]

Probab=97.89  E-value=0.001  Score=58.45  Aligned_cols=185  Identities=12%  Similarity=-0.001  Sum_probs=106.1

Q ss_pred             EEEcCCCcEEEEe-CCCcEEEEcc-CC-ceeEecccCCccccceEEccCCCEEEEEeCCCcEEEEe---cCC-cEEEEec
Q 026118           15 VSVDGNGVLYTAT-GDGWIKRMHP-NG-TWEDWHQVGSQSLLGLTTTKENNVIIVCDSQQGLLKVS---EEG-VTVLVSQ   87 (243)
Q Consensus        15 i~~d~~g~l~~~~-~~~~i~~~~~-~g-~~~~~~~~~~~~~~~i~~~~~g~l~~v~~~~~gl~~~~---~~g-~~~~~~~   87 (243)
                      ..+.|+.+..++. .+..++.++. .. ....+ .....|.+.+.|.|.|.+ |++....+..++.   ... .+.+.  
T Consensus       457 ~sFsPd~rfLlScSED~svRLWsl~t~s~~V~y-~GH~~PVwdV~F~P~GyY-Fatas~D~tArLWs~d~~~PlRifa--  532 (707)
T KOG0263|consen  457 CSFSPDRRFLLSCSEDSSVRLWSLDTWSCLVIY-KGHLAPVWDVQFAPRGYY-FATASHDQTARLWSTDHNKPLRIFA--  532 (707)
T ss_pred             eeecccccceeeccCCcceeeeecccceeEEEe-cCCCcceeeEEecCCceE-EEecCCCceeeeeecccCCchhhhc--
Confidence            5556666555444 6666666662 22 22222 234557767889999877 5554444544443   222 22222  


Q ss_pred             cCCCcccCCccEEEcCCCcEEEEeCCCCCCcccccccccccCCCceEEEEeCCCCeeEE-eeccccccceEEEcCCCCEE
Q 026118           88 FNGSQLRFANDVIEASDGSLYFTVSSTKFTPAEYYLDLVSGEPHGVLLKYDPSTNQTSL-VLDGLYFANGVALSEDERFL  166 (243)
Q Consensus        88 ~~~~~~~~~~~l~~d~~G~l~v~~~~~~~~~~~~~~~~~~~~~~g~v~~~~~~~~~~~~-~~~~~~~~~gi~~~~dg~~l  166 (243)
                         ...+-+.++.+.|..++..+.+.               ...-++|  |-.+|...+ +.........++++|+|++|
T Consensus       533 ---ghlsDV~cv~FHPNs~Y~aTGSs---------------D~tVRlW--Dv~~G~~VRiF~GH~~~V~al~~Sp~Gr~L  592 (707)
T KOG0263|consen  533 ---GHLSDVDCVSFHPNSNYVATGSS---------------DRTVRLW--DVSTGNSVRIFTGHKGPVTALAFSPCGRYL  592 (707)
T ss_pred             ---ccccccceEEECCcccccccCCC---------------CceEEEE--EcCCCcEEEEecCCCCceEEEEEcCCCceE
Confidence               12345667889998876666432               1222444  444444444 44434455789999999966


Q ss_pred             EEEEcCCCeEEEEEeecCCCcceEEeccCCCCCCCceEECCCCCEEEEEecCCc-hhhhhhh
Q 026118          167 VVCESWKFRCVKHFLKVSGRTDREIFIDNLPGGPDNVNLARDGSFWISIIKMDP-KGIQALQ  227 (243)
Q Consensus       167 ~v~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~i~~d~~G~lwv~~~~~~~-~~~~~~~  227 (243)
                      --+ ...+.|..||+..+.+-.  .+. +..+....|.++.+|++.++...+.+ ..+++..
T Consensus       593 aSg-~ed~~I~iWDl~~~~~v~--~l~-~Ht~ti~SlsFS~dg~vLasgg~DnsV~lWD~~~  650 (707)
T KOG0263|consen  593 ASG-DEDGLIKIWDLANGSLVK--QLK-GHTGTIYSLSFSRDGNVLASGGADNSVRLWDLTK  650 (707)
T ss_pred             eec-ccCCcEEEEEcCCCcchh--hhh-cccCceeEEEEecCCCEEEecCCCCeEEEEEchh
Confidence            655 456889999987542211  111 12445677999999998887766554 3344333

>PF05787 DUF839: Bacterial protein of unknown function (DUF839); InterPro: IPR008557 This family consists of bacterial proteins of unknown function

Probab=97.83  E-value=0.0029  Score=55.32  Aligned_cols=123  Identities=17%  Similarity=0.239  Sum_probs=69.8

Q ss_pred             cccCCccEEEcC-CCcEEEEeCCCCCC-ccccc-ccccccCCCceEEEEeCCCC-------eeEEeecc-----------
Q 026118           92 QLRFANDVIEAS-DGSLYFTVSSTKFT-PAEYY-LDLVSGEPHGVLLKYDPSTN-------QTSLVLDG-----------  150 (243)
Q Consensus        92 ~~~~~~~l~~d~-~G~l~v~~~~~~~~-~~~~~-~~~~~~~~~g~v~~~~~~~~-------~~~~~~~~-----------  150 (243)
                      .+..+.++.+++ +|.+|++.+...-. ..... .........|.|++++++..       +++.+...           
T Consensus       348 ~f~RpEgi~~~p~~g~vY~a~T~~~~r~~~~~~~~n~~~~n~~G~I~r~~~~~~d~~~~~f~~~~~~~~g~~~~~~~~~~  427 (524)
T PF05787_consen  348 PFDRPEGITVNPDDGEVYFALTNNSGRGESDVDAANPRAGNGYGQIYRYDPDGNDHAATTFTWELFLVGGDPTDASGNGS  427 (524)
T ss_pred             cccCccCeeEeCCCCEEEEEEecCCCCcccccccCCcccCCcccEEEEecccCCccccceeEEEEEEEecCccccccccc
Confidence            456788999998 58999986542210 00000 11112345678999998865       44433211           


Q ss_pred             -------ccccceEEEcCCCCEEEEEEcCCCeE------------EEEEe--------ecCCCcceEEeccC-CCCCCCc
Q 026118          151 -------LYFANGVALSEDERFLVVCESWKFRC------------VKHFL--------KVSGRTDREIFIDN-LPGGPDN  202 (243)
Q Consensus       151 -------~~~~~gi~~~~dg~~l~v~~~~~~~i------------~~~~~--------~~~~~~~~~~~~~~-~~~~~~~  202 (243)
                             ...|..|+|+++|+ |||++.....-            +.+..        .+...+..+.|... ...-..|
T Consensus       428 ~~~~~~~f~sPDNL~~d~~G~-LwI~eD~~~~~~~l~g~t~~G~~~~~~~~~G~~~~~~~~~~g~~~rf~~~P~gaE~tG  506 (524)
T PF05787_consen  428 NKCDDNGFASPDNLAFDPDGN-LWIQEDGGGSNNNLPGVTPDGEVYDFARNDGNNVWAYDPDTGELKRFLVGPNGAEITG  506 (524)
T ss_pred             CcccCCCcCCCCceEECCCCC-EEEEeCCCCCCcccccccccCceeeeeecccceeeeccccccceeeeccCCCCccccc
Confidence                   34678899999999 99997654321            11211        11122233333221 2224667


Q ss_pred             eEECCCCC-EEEEE
Q 026118          203 VNLARDGS-FWISI  215 (243)
Q Consensus       203 i~~d~~G~-lwv~~  215 (243)
                      +++++||+ |||..
T Consensus       507 ~~fspDg~tlFvni  520 (524)
T PF05787_consen  507 PCFSPDGRTLFVNI  520 (524)
T ss_pred             ceECCCCCEEEEEE
Confidence            99999998 77743

>TIGR03032 conserved hypothetical protein TIGR03032

Probab=97.82  E-value=0.00071  Score=54.14  Aligned_cols=137  Identities=20%  Similarity=0.231  Sum_probs=78.0

Q ss_pred             CcccEEEcCCCcEEEEe-CCCcEEEEccCCceeE-ec--------ccCCccccceEEccCCCEEEEEeCCC----cEEEE
Q 026118           11 HPEDVSVDGNGVLYTAT-GDGWIKRMHPNGTWED-WH--------QVGSQSLLGLTTTKENNVIIVCDSQQ----GLLKV   76 (243)
Q Consensus        11 ~p~~i~~d~~g~l~~~~-~~~~i~~~~~~g~~~~-~~--------~~~~~~~~~i~~~~~g~l~~v~~~~~----gl~~~   76 (243)
                      ..+.|++ .++.+|+.+ .-.-+..++++..+.. |.        ....-..+||++ .+|+-.||+..+.    +-++-
T Consensus       104 diHdia~-~~~~l~fVNT~fSCLatl~~~~SF~P~WkPpFIs~la~eDRCHLNGlA~-~~g~p~yVTa~~~sD~~~gWR~  181 (335)
T TIGR03032       104 DAHDLAL-GAGRLLFVNTLFSCLATVSPDYSFVPLWKPPFISKLAPEDRCHLNGMAL-DDGEPRYVTALSQSDVADGWRE  181 (335)
T ss_pred             chhheee-cCCcEEEEECcceeEEEECCCCccccccCCccccccCccCceeecceee-eCCeEEEEEEeeccCCcccccc
Confidence            3455666 455666554 3345666665544332 11        111223448888 4566557765321    22232


Q ss_pred             e-cCC-c-EEEEec-cCCCcccCCccEEEcCCCcEEEEeCCCCCCcccccccccccCCCceEEEEeCCCCeeEEeecccc
Q 026118           77 S-EEG-V-TVLVSQ-FNGSQLRFANDVIEASDGSLYFTVSSTKFTPAEYYLDLVSGEPHGVLLKYDPSTNQTSLVLDGLY  152 (243)
Q Consensus        77 ~-~~g-~-~~~~~~-~~~~~~~~~~~l~~d~~G~l~v~~~~~~~~~~~~~~~~~~~~~~g~v~~~~~~~~~~~~~~~~~~  152 (243)
                      + .+| + ..+... .-......|.+... .+|++|+.|+.                 .+.|+++|+++|+.+.+..-..
T Consensus       182 ~~~~gG~vidv~s~evl~~GLsmPhSPRW-hdgrLwvldsg-----------------tGev~~vD~~~G~~e~Va~vpG  243 (335)
T TIGR03032       182 GRRDGGCVIDIPSGEVVASGLSMPHSPRW-YQGKLWLLNSG-----------------RGELGYVDPQAGKFQPVAFLPG  243 (335)
T ss_pred             cccCCeEEEEeCCCCEEEcCccCCcCCcE-eCCeEEEEECC-----------------CCEEEEEcCCCCcEEEEEECCC
Confidence            2 222 1 111110 00011234444333 37999999875                 4689999999999999887778


Q ss_pred             ccceEEEcCCCCEEEEE
Q 026118          153 FANGVALSEDERFLVVC  169 (243)
Q Consensus       153 ~~~gi~~~~dg~~l~v~  169 (243)
                      .+.||.|.  |++++|+
T Consensus       244 ~~rGL~f~--G~llvVg  258 (335)
T TIGR03032       244 FTRGLAFA--GDFAFVG  258 (335)
T ss_pred             CCccccee--CCEEEEE
Confidence            99999998  8877776

This protein family is uncharacterized. A number of motifs are conserved perfectly among all member sequences. The function of this protein is unknown.

>COG3204 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=97.76  E-value=0.004  Score=49.34  Aligned_cols=155  Identities=14%  Similarity=0.113  Sum_probs=92.0

Q ss_pred             ccCCcccEEEcCCCcEEEEe-CCCcEEEEc--cCCceeEecc-----cC----Cc-cccceEEccCCCEEEEEeCCC--c
Q 026118            8 IVNHPEDVSVDGNGVLYTAT-GDGWIKRMH--PNGTWEDWHQ-----VG----SQ-SLLGLTTTKENNVIIVCDSQQ--G   72 (243)
Q Consensus         8 ~~~~p~~i~~d~~g~l~~~~-~~~~i~~~~--~~g~~~~~~~-----~~----~~-~~~~i~~~~~g~l~~v~~~~~--g   72 (243)
                      .+..||+|.+-.+|..-+++ .+..++.+.  ++..+.....     ..    +. -. |++.|+.++.||++-..+  +
T Consensus       127 g~~DpE~Ieyig~n~fvi~dER~~~l~~~~vd~~t~~~~~~~~~i~L~~~~k~N~GfE-GlA~d~~~~~l~~aKEr~P~~  205 (316)
T COG3204         127 GFSDPETIEYIGGNQFVIVDERDRALYLFTVDADTTVISAKVQKIPLGTTNKKNKGFE-GLAWDPVDHRLFVAKERNPIG  205 (316)
T ss_pred             ccCChhHeEEecCCEEEEEehhcceEEEEEEcCCccEEeccceEEeccccCCCCcCce-eeecCCCCceEEEEEccCCcE
Confidence            37899999998888766766 566676554  4544333221     10    11 13 799998877768887553  6


Q ss_pred             EEEEe--cCC-cEEEEeccCCC---cccCCccEEEcC-CCcEEEEeCCCCCCcccccccccccCCCceEEEEeCCCCeeE
Q 026118           73 LLKVS--EEG-VTVLVSQFNGS---QLRFANDVIEAS-DGSLYFTVSSTKFTPAEYYLDLVSGEPHGVLLKYDPSTNQTS  145 (243)
Q Consensus        73 l~~~~--~~g-~~~~~~~~~~~---~~~~~~~l~~d~-~G~l~v~~~~~~~~~~~~~~~~~~~~~~g~v~~~~~~~~~~~  145 (243)
                      |+.++  ++. ..+....+...   ...-+.++.+++ .++++|-..                 .+..|..+|.++.-..
T Consensus       206 I~~~~~~~~~l~~~~~~~~~~~~~~f~~DvSgl~~~~~~~~LLVLS~-----------------ESr~l~Evd~~G~~~~  268 (316)
T COG3204         206 IFEVTQSPSSLSVHASLDPTADRDLFVLDVSGLEFNAITNSLLVLSD-----------------ESRRLLEVDLSGEVIE  268 (316)
T ss_pred             EEEEecCCcccccccccCcccccceEeeccccceecCCCCcEEEEec-----------------CCceEEEEecCCCeee
Confidence            77776  223 22222211111   123455677776 456665321                 2346778888733222


Q ss_pred             Ee---------eccccccceEEEcCCCCEEEEEEcCCCeEEEEEee
Q 026118          146 LV---------LDGLYFANGVALSEDERFLVVCESWKFRCVKHFLK  182 (243)
Q Consensus       146 ~~---------~~~~~~~~gi~~~~dg~~l~v~~~~~~~i~~~~~~  182 (243)
                      .+         ..+.+.+.|++.+++|. ||+... .+..+++.++
T Consensus       269 ~lsL~~g~~gL~~dipqaEGiamDd~g~-lYIvSE-Pnlfy~F~~~  312 (316)
T COG3204         269 LLSLTKGNHGLSSDIPQAEGIAMDDDGN-LYIVSE-PNLFYRFTPQ  312 (316)
T ss_pred             eEEeccCCCCCcccCCCcceeEECCCCC-EEEEec-CCcceecccC
Confidence            22         12346678999999998 999864 4667777654

>COG3211 PhoX Predicted phosphatase [General function prediction only]

Probab=97.76  E-value=0.00037  Score=59.67  Aligned_cols=74  Identities=19%  Similarity=0.149  Sum_probs=47.9

Q ss_pred             ccCCccEEEcCCCcEEEEeCCCCCCcccccccccccCCCceEEEEeCCCCeeEEeeccc--cccceEEEcCCCCEEEEEE
Q 026118           93 LRFANDVIEASDGSLYFTVSSTKFTPAEYYLDLVSGEPHGVLLKYDPSTNQTSLVLDGL--YFANGVALSEDERFLVVCE  170 (243)
Q Consensus        93 ~~~~~~l~~d~~G~l~v~~~~~~~~~~~~~~~~~~~~~~g~v~~~~~~~~~~~~~~~~~--~~~~gi~~~~dg~~l~v~~  170 (243)
                      +..|..|++|+.|+||+.+....-....    .  ...-..+..=++++++++++....  ....|++|+||+++|||.-
T Consensus       499 f~~PDnl~fD~~GrLWi~TDg~~s~~~~----~--~~G~~~m~~~~p~~g~~~rf~t~P~g~E~tG~~FspD~~TlFV~v  572 (616)
T COG3211         499 FNSPDNLAFDPWGRLWIQTDGSGSTLRN----R--FRGVTQMLTPDPKTGTIKRFLTGPIGCEFTGPCFSPDGKTLFVNV  572 (616)
T ss_pred             ccCCCceEECCCCCEEEEecCCCCccCc----c--cccccccccCCCccceeeeeccCCCcceeecceeCCCCceEEEEe
Confidence            5678899999999999987541100000    0  000112334567777887775443  3467999999999999986


Q ss_pred             cC
Q 026118          171 SW  172 (243)
Q Consensus       171 ~~  172 (243)
                      +.
T Consensus       573 QH  574 (616)
T COG3211         573 QH  574 (616)
T ss_pred             cC
Confidence            53

>COG2133 Glucose/sorbosone dehydrogenases [Carbohydrate transport and metabolism]

Probab=97.74  E-value=0.003  Score=52.81  Aligned_cols=154  Identities=18%  Similarity=0.192  Sum_probs=85.1

Q ss_pred             cCCcccEEEcCCCcEEEEeCC--------------CcEEEEccCC---------ceeEecccCCccccceEEccC-CCEE
Q 026118            9 VNHPEDVSVDGNGVLYTATGD--------------GWIKRMHPNG---------TWEDWHQVGSQSLLGLTTTKE-NNVI   64 (243)
Q Consensus         9 ~~~p~~i~~d~~g~l~~~~~~--------------~~i~~~~~~g---------~~~~~~~~~~~~~~~i~~~~~-g~l~   64 (243)
                      ...-..|++++||.||++..+              |++.+++..+         ....|.....+|. |++++|. |.| 
T Consensus       176 ~H~g~~l~f~pDG~Lyvs~G~~~~~~~aq~~~~~~Gk~~r~~~a~~~~~d~p~~~~~i~s~G~RN~q-Gl~w~P~tg~L-  253 (399)
T COG2133         176 HHFGGRLVFGPDGKLYVTTGSNGDPALAQDNVSLAGKVLRIDRAGIIPADNPFPNSEIWSYGHRNPQ-GLAWHPVTGAL-  253 (399)
T ss_pred             CcCcccEEECCCCcEEEEeCCCCCcccccCccccccceeeeccCcccccCCCCCCcceEEeccCCcc-ceeecCCCCcE-
Confidence            445567999999999988621              3455554222         2233444457889 9999987 778 


Q ss_pred             EEEeCCC-cEE---EEe--cCC--c----EEEEecc-------------------CCCcccCCccEEEcC-C------Cc
Q 026118           65 IVCDSQQ-GLL---KVS--EEG--V----TVLVSQF-------------------NGSQLRFANDVIEAS-D------GS  106 (243)
Q Consensus        65 ~v~~~~~-gl~---~~~--~~g--~----~~~~~~~-------------------~~~~~~~~~~l~~d~-~------G~  106 (243)
                      |++..+. .+.   .++  +.|  .    ..+....                   .-.++..+.+|++.. +      |.
T Consensus       254 w~~e~g~d~~~~~Deln~i~~G~nYGWP~~~~G~~~~g~~~~~~~~~~~~~~p~~~~~~h~ApsGmaFy~G~~fP~~r~~  333 (399)
T COG2133         254 WTTEHGPDALRGPDELNSIRPGKNYGWPYAYFGQNYDGRAIPDGTVVAGAIQPVYTWAPHIAPSGMAFYTGDLFPAYRGD  333 (399)
T ss_pred             EEEecCCCcccCcccccccccCCccCCceeccCcccCccccCCCcccccccCCceeeccccccceeEEecCCcCccccCc
Confidence            9987643 221   001  111  0    0000000                   001122334555542 1      45


Q ss_pred             EEEEeCCCCCCcccccccccccCCCceEEEEeCCCC---eeEEeec--cccccceEEEcCCCCEEEEEEcC-CCeEEEEE
Q 026118          107 LYFTVSSTKFTPAEYYLDLVSGEPHGVLLKYDPSTN---QTSLVLD--GLYFANGVALSEDERFLVVCESW-KFRCVKHF  180 (243)
Q Consensus       107 l~v~~~~~~~~~~~~~~~~~~~~~~g~v~~~~~~~~---~~~~~~~--~~~~~~gi~~~~dg~~l~v~~~~-~~~i~~~~  180 (243)
                      ++++...                 +-.+.+.+++++   ..+.+..  ....+.++++.+||- ||+++.. ++.|+|+.
T Consensus       334 lfV~~hg-----------------sw~~~~~~~~g~~~~~~~~fl~~d~~gR~~dV~v~~DGa-llv~~D~~~g~i~Rv~  395 (399)
T COG2133         334 LFVGAHG-----------------SWPVLRLRPDGNYKVVLTGFLSGDLGGRPRDVAVAPDGA-LLVLTDQGDGRILRVS  395 (399)
T ss_pred             EEEEeec-----------------ceeEEEeccCCCcceEEEEEEecCCCCcccceEECCCCe-EEEeecCCCCeEEEec
Confidence            6665321                 124677777744   1222221  235789999999998 7777665 66999876


Q ss_pred             ee
Q 026118          181 LK  182 (243)
Q Consensus       181 ~~  182 (243)
                      ..
T Consensus       396 ~~  397 (399)
T COG2133         396 YA  397 (399)
T ss_pred             CC
Confidence            43

>KOG0289 consensus mRNA splicing factor [General function prediction only]

Probab=97.74  E-value=0.01  Score=49.26  Aligned_cols=143  Identities=14%  Similarity=0.116  Sum_probs=82.4

Q ss_pred             cccceEEccCCCEEEEEeCCCcEEEEe--cCCcEEEEeccCCCcccCCccEEEcCCCcEEEEeCCCCCCccccccccccc
Q 026118           51 SLLGLTTTKENNVIIVCDSQQGLLKVS--EEGVTVLVSQFNGSQLRFANDVIEASDGSLYFTVSSTKFTPAEYYLDLVSG  128 (243)
Q Consensus        51 ~~~~i~~~~~g~l~~v~~~~~gl~~~~--~~g~~~~~~~~~~~~~~~~~~l~~d~~G~l~v~~~~~~~~~~~~~~~~~~~  128 (243)
                      |..++...+.|.+ ++.....+-+.|.  .+|........... .....+.++.|||.|+.+-                 
T Consensus       305 ~V~~ls~h~tgeY-llsAs~d~~w~Fsd~~~g~~lt~vs~~~s-~v~~ts~~fHpDgLifgtg-----------------  365 (506)
T KOG0289|consen  305 PVTGLSLHPTGEY-LLSASNDGTWAFSDISSGSQLTVVSDETS-DVEYTSAAFHPDGLIFGTG-----------------  365 (506)
T ss_pred             cceeeeeccCCcE-EEEecCCceEEEEEccCCcEEEEEeeccc-cceeEEeeEcCCceEEecc-----------------
Confidence            4448888899998 5554456766665  56621111111111 1234466899999888762                 


Q ss_pred             CCCceEEEEeCCCCe-eEEeeccccccceEEEcCCCCEEEEEEcCCCeEEEEEeecCCCcceEEeccCCCCCCCceEECC
Q 026118          129 EPHGVLLKYDPSTNQ-TSLVLDGLYFANGVALSEDERFLVVCESWKFRCVKHFLKVSGRTDREIFIDNLPGGPDNVNLAR  207 (243)
Q Consensus       129 ~~~g~v~~~~~~~~~-~~~~~~~~~~~~gi~~~~dg~~l~v~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~i~~d~  207 (243)
                      ...+.|-.+|...+. ...+.....-...|.|+.+|-||.++ ..+..|..||+...  .+++.+..........+.+|.
T Consensus       366 t~d~~vkiwdlks~~~~a~Fpght~~vk~i~FsENGY~Lat~-add~~V~lwDLRKl--~n~kt~~l~~~~~v~s~~fD~  442 (506)
T KOG0289|consen  366 TPDGVVKIWDLKSQTNVAKFPGHTGPVKAISFSENGYWLATA-ADDGSVKLWDLRKL--KNFKTIQLDEKKEVNSLSFDQ  442 (506)
T ss_pred             CCCceEEEEEcCCccccccCCCCCCceeEEEeccCceEEEEE-ecCCeEEEEEehhh--cccceeeccccccceeEEEcC
Confidence            234556567776543 22333333445679999888766665 45566999998642  233333211111245688888


Q ss_pred             CCCEEEEE
Q 026118          208 DGSFWISI  215 (243)
Q Consensus       208 ~G~lwv~~  215 (243)
                      .|...+..
T Consensus       443 SGt~L~~~  450 (506)
T KOG0289|consen  443 SGTYLGIA  450 (506)
T ss_pred             CCCeEEee
Confidence            88754443

>PF05787 DUF839: Bacterial protein of unknown function (DUF839); InterPro: IPR008557 This family consists of bacterial proteins of unknown function

Probab=97.73  E-value=0.00096  Score=58.23  Aligned_cols=79  Identities=20%  Similarity=0.232  Sum_probs=49.3

Q ss_pred             cccCCccEEEcCCCcEEEEeCCCCCCcc-----ccc--ccccccCCCceEEEEeCCCCeeEEeecc--ccccceEEEcCC
Q 026118           92 QLRFANDVIEASDGSLYFTVSSTKFTPA-----EYY--LDLVSGEPHGVLLKYDPSTNQTSLVLDG--LYFANGVALSED  162 (243)
Q Consensus        92 ~~~~~~~l~~d~~G~l~v~~~~~~~~~~-----~~~--~~~~~~~~~g~v~~~~~~~~~~~~~~~~--~~~~~gi~~~~d  162 (243)
                      .+..|..|+++++|+||+++........     ...  ..+....... ++..++.+++++++...  .....|++|+||
T Consensus       434 ~f~sPDNL~~d~~G~LwI~eD~~~~~~~l~g~t~~G~~~~~~~~~G~~-~~~~~~~~g~~~rf~~~P~gaE~tG~~fspD  512 (524)
T PF05787_consen  434 GFASPDNLAFDPDGNLWIQEDGGGSNNNLPGVTPDGEVYDFARNDGNN-VWAYDPDTGELKRFLVGPNGAEITGPCFSPD  512 (524)
T ss_pred             CcCCCCceEECCCCCEEEEeCCCCCCcccccccccCceeeeeecccce-eeeccccccceeeeccCCCCcccccceECCC
Confidence            3568889999999999999765322110     000  0000000111 55567777888887643  244689999999


Q ss_pred             CCEEEEEEc
Q 026118          163 ERFLVVCES  171 (243)
Q Consensus       163 g~~l~v~~~  171 (243)
                      +++||+.-+
T Consensus       513 g~tlFvniQ  521 (524)
T PF05787_consen  513 GRTLFVNIQ  521 (524)
T ss_pred             CCEEEEEEe
Confidence            999998643

>KOG0293 consensus WD40 repeat-containing protein [Function unknown]

Probab=97.70  E-value=0.0032  Score=51.90  Aligned_cols=195  Identities=13%  Similarity=0.117  Sum_probs=109.9

Q ss_pred             ccEEEcCCCcEE-EEeCCC--cEEEEccCCceeEeccc--CCccccceEEccCCCEEEEEeCCCcEEEEe-cCC-cEEEE
Q 026118           13 EDVSVDGNGVLY-TATGDG--WIKRMHPNGTWEDWHQV--GSQSLLGLTTTKENNVIIVCDSQQGLLKVS-EEG-VTVLV   85 (243)
Q Consensus        13 ~~i~~d~~g~l~-~~~~~~--~i~~~~~~g~~~~~~~~--~~~~~~~i~~~~~g~l~~v~~~~~gl~~~~-~~g-~~~~~   85 (243)
                      ..+.+.++|.-. .++.+.  .|+.+..+..++-...-  ...|+..|+.+||.+.|..+....-+..+| .+| ..+..
T Consensus       228 Wfl~FS~nGkyLAsaSkD~Taiiw~v~~d~~~kl~~tlvgh~~~V~yi~wSPDdryLlaCg~~e~~~lwDv~tgd~~~~y  307 (519)
T KOG0293|consen  228 WFLQFSHNGKYLASASKDSTAIIWIVVYDVHFKLKKTLVGHSQPVSYIMWSPDDRYLLACGFDEVLSLWDVDTGDLRHLY  307 (519)
T ss_pred             EEEEEcCCCeeEeeccCCceEEEEEEecCcceeeeeeeecccCceEEEEECCCCCeEEecCchHheeeccCCcchhhhhc
Confidence            345555555422 222222  23444455554332221  134554688999999867776656677888 677 44332


Q ss_pred             eccCCCcccCCccEEEcCCCcEEEEeCCCCCCcccccccccccCCCceEEEEeCCCCeeEEeeccc--cccceEEEcCCC
Q 026118           86 SQFNGSQLRFANDVIEASDGSLYFTVSSTKFTPAEYYLDLVSGEPHGVLLKYDPSTNQTSLVLDGL--YFANGVALSEDE  163 (243)
Q Consensus        86 ~~~~~~~~~~~~~l~~d~~G~l~v~~~~~~~~~~~~~~~~~~~~~~g~v~~~~~~~~~~~~~~~~~--~~~~gi~~~~dg  163 (243)
                      ....   -..+.+.+.-|||.-+++.+                 ....++..+.+ |+...-+.+.  +....+++++||
T Consensus       308 ~~~~---~~S~~sc~W~pDg~~~V~Gs-----------------~dr~i~~wdlD-gn~~~~W~gvr~~~v~dlait~Dg  366 (519)
T KOG0293|consen  308 PSGL---GFSVSSCAWCPDGFRFVTGS-----------------PDRTIIMWDLD-GNILGNWEGVRDPKVHDLAITYDG  366 (519)
T ss_pred             ccCc---CCCcceeEEccCCceeEecC-----------------CCCcEEEecCC-cchhhcccccccceeEEEEEcCCC
Confidence            2111   13455778889998888743                 34578899998 4433333332  345689999999


Q ss_pred             CEEEEEEcCCCeEEEEEeecCCCcceEEeccCCCCCCCceEECCCCCEEEEEecCCchhhhhhhcChHHH
Q 026118          164 RFLVVCESWKFRCVKHFLKVSGRTDREIFIDNLPGGPDNVNLARDGSFWISIIKMDPKGIQALQSCKERK  233 (243)
Q Consensus       164 ~~l~v~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~i~~d~~G~lwv~~~~~~~~~~~~~~~~~~~~  233 (243)
                      ++++... .+..|..|+....  .. ...... .-....+.++.+|.+.+......+-.+..+.++..++
T Consensus       367 k~vl~v~-~d~~i~l~~~e~~--~d-r~lise-~~~its~~iS~d~k~~LvnL~~qei~LWDl~e~~lv~  431 (519)
T KOG0293|consen  367 KYVLLVT-VDKKIRLYNREAR--VD-RGLISE-EQPITSFSISKDGKLALVNLQDQEIHLWDLEENKLVR  431 (519)
T ss_pred             cEEEEEe-cccceeeechhhh--hh-hccccc-cCceeEEEEcCCCcEEEEEcccCeeEEeecchhhHHH
Confidence            9998875 4567777776531  11 111111 1123457888888877766655443333344443333

>KOG0772 consensus Uncharacterized conserved protein, contains WD40 repeat [Function unknown]

Probab=97.70  E-value=0.0022  Score=54.25  Aligned_cols=196  Identities=12%  Similarity=0.071  Sum_probs=106.5

Q ss_pred             cccEEEcCCC-cEEEEeCCCcEEEEccC---CceeEecc---cCCccccceEEccCCCEEEEEeCCCcEEEEecCCcEEE
Q 026118           12 PEDVSVDGNG-VLYTATGDGWIKRMHPN---GTWEDWHQ---VGSQSLLGLTTTKENNVIIVCDSQQGLLKVSEEGVTVL   84 (243)
Q Consensus        12 p~~i~~d~~g-~l~~~~~~~~i~~~~~~---g~~~~~~~---~~~~~~~~i~~~~~g~l~~v~~~~~gl~~~~~~g~~~~   84 (243)
                      -.++++|+.| +++.|..+..|..+|-.   .....|..   -..++..++.+++.|+.+.+.......-.+|.+|+...
T Consensus       170 Vsal~~Dp~GaR~~sGs~Dy~v~~wDf~gMdas~~~fr~l~P~E~h~i~sl~ys~Tg~~iLvvsg~aqakl~DRdG~~~~  249 (641)
T KOG0772|consen  170 VSALAVDPSGARFVSGSLDYTVKFWDFQGMDASMRSFRQLQPCETHQINSLQYSVTGDQILVVSGSAQAKLLDRDGFEIV  249 (641)
T ss_pred             EEEeeecCCCceeeeccccceEEEEecccccccchhhhccCcccccccceeeecCCCCeEEEEecCcceeEEccCCceee
Confidence            3468899988 78888888889888833   33333321   12334437889988887455543334455567773322


Q ss_pred             --Eec--------cCCCcccCCccEEEcCCC-cEEEEeCCCCCCcccccccccccCCCceEEEEeCCCCeeEEeec----
Q 026118           85 --VSQ--------FNGSQLRFANDVIEASDG-SLYFTVSSTKFTPAEYYLDLVSGEPHGVLLKYDPSTNQTSLVLD----  149 (243)
Q Consensus        85 --~~~--------~~~~~~~~~~~l~~d~~G-~l~v~~~~~~~~~~~~~~~~~~~~~~g~v~~~~~~~~~~~~~~~----  149 (243)
                        ...        ........+.+-++.|+. ..|++.+.               ...-+||-++....+++.+.+    
T Consensus       250 e~~KGDQYI~Dm~nTKGHia~lt~g~whP~~k~~FlT~s~---------------DgtlRiWdv~~~k~q~qVik~k~~~  314 (641)
T KOG0772|consen  250 EFSKGDQYIRDMYNTKGHIAELTCGCWHPDNKEEFLTCSY---------------DGTLRIWDVNNTKSQLQVIKTKPAG  314 (641)
T ss_pred             eeeccchhhhhhhccCCceeeeeccccccCcccceEEecC---------------CCcEEEEecCCchhheeEEeeccCC
Confidence              110        001111223344555643 35555432               122356665544333433321    


Q ss_pred             c-ccccceEEEcCCCCEEEEEEcCCCeEEEEEeecCCCcceEEe---ccCCCCCCCceEECCCCCEEEEEecCC-chhhh
Q 026118          150 G-LYFANGVALSEDERFLVVCESWKFRCVKHFLKVSGRTDREIF---IDNLPGGPDNVNLARDGSFWISIIKMD-PKGIQ  224 (243)
Q Consensus       150 ~-~~~~~gi~~~~dg~~l~v~~~~~~~i~~~~~~~~~~~~~~~~---~~~~~~~~~~i~~d~~G~lwv~~~~~~-~~~~~  224 (243)
                      + .-.+...+|++||+ ++.+...+++|-.++.-. ...+....   +.........|+++.+|+...+-.... .+.++
T Consensus       315 g~Rv~~tsC~~nrdg~-~iAagc~DGSIQ~W~~~~-~~v~p~~~vk~AH~~g~~Itsi~FS~dg~~LlSRg~D~tLKvWD  392 (641)
T KOG0772|consen  315 GKRVPVTSCAWNRDGK-LIAAGCLDGSIQIWDKGS-RTVRPVMKVKDAHLPGQDITSISFSYDGNYLLSRGFDDTLKVWD  392 (641)
T ss_pred             CcccCceeeecCCCcc-hhhhcccCCceeeeecCC-cccccceEeeeccCCCCceeEEEeccccchhhhccCCCceeeee
Confidence            1 12357789999999 666667888998888622 11111111   111112356799999999777654433 34444

>COG3490 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=97.67  E-value=0.0054  Score=48.44  Aligned_cols=165  Identities=15%  Similarity=0.169  Sum_probs=79.8

Q ss_pred             cCCceeEecccCCccccceEEccCCC-EEEEEeCCCc--EEEEecCC-cEE-EEeccCCCcccCCccEEEcCCCcEEEEe
Q 026118           37 PNGTWEDWHQVGSQSLLGLTTTKENN-VIIVCDSQQG--LLKVSEEG-VTV-LVSQFNGSQLRFANDVIEASDGSLYFTV  111 (243)
Q Consensus        37 ~~g~~~~~~~~~~~~~~~i~~~~~g~-l~~v~~~~~g--l~~~~~~g-~~~-~~~~~~~~~~~~~~~l~~d~~G~l~v~~  111 (243)
                      ..|+...-...+.+.. +|+++|.-. -+.++- .-|  .+.||.++ ..+ ......+ .+=+-.+ ++++||++.+++
T Consensus        56 eaGk~v~~~~lpaR~H-gi~~~p~~~ravafAR-rPGtf~~vfD~~~~~~pv~~~s~~~-RHfyGHG-vfs~dG~~LYAT  131 (366)
T COG3490          56 EAGKIVFATALPARGH-GIAFHPALPRAVAFAR-RPGTFAMVFDPNGAQEPVTLVSQEG-RHFYGHG-VFSPDGRLLYAT  131 (366)
T ss_pred             cCCceeeeeecccccC-CeecCCCCcceEEEEe-cCCceEEEECCCCCcCcEEEecccC-ceeeccc-ccCCCCcEEEee
Confidence            3444433222234455 788876433 223433 233  45666443 221 1111111 1112234 588999966665


Q ss_pred             CCCCCCcccccccccccCCCceEEEEeCCCCeeEEee---ccccccceEEEcCCCCEEEEEEcC----------------
Q 026118          112 SSTKFTPAEYYLDLVSGEPHGVLLKYDPSTNQTSLVL---DGLYFANGVALSEDERFLVVCESW----------------  172 (243)
Q Consensus       112 ~~~~~~~~~~~~~~~~~~~~g~v~~~~~~~~~~~~~~---~~~~~~~gi~~~~dg~~l~v~~~~----------------  172 (243)
                      .+.          .  ....|.|-.||.. ..+.++.   ...-.|..+.+.+||++|.+++-+                
T Consensus       132 End----------f--d~~rGViGvYd~r-~~fqrvgE~~t~GiGpHev~lm~DGrtlvvanGGIethpdfgR~~lNlds  198 (366)
T COG3490         132 END----------F--DPNRGVIGVYDAR-EGFQRVGEFSTHGIGPHEVTLMADGRTLVVANGGIETHPDFGRTELNLDS  198 (366)
T ss_pred             cCC----------C--CCCCceEEEEecc-cccceecccccCCcCcceeEEecCCcEEEEeCCceecccccCccccchhh
Confidence            331          1  1233445556654 4444442   233568889999999988887531                


Q ss_pred             -CCeEEEEEeecCCCcceEEecc-CCCCCCCceEECCCCCEEEEEecC
Q 026118          173 -KFRCVKHFLKVSGRTDREIFID-NLPGGPDNVNLARDGSFWISIIKM  218 (243)
Q Consensus       173 -~~~i~~~~~~~~~~~~~~~~~~-~~~~~~~~i~~d~~G~lwv~~~~~  218 (243)
                       ..++..++..++.+-++.+++. ...-...-++++++|++|.++.-.
T Consensus       199 MePSlvlld~atG~liekh~Lp~~l~~lSiRHld~g~dgtvwfgcQy~  246 (366)
T COG3490         199 MEPSLVLLDAATGNLIEKHTLPASLRQLSIRHLDIGRDGTVWFGCQYR  246 (366)
T ss_pred             cCccEEEEeccccchhhhccCchhhhhcceeeeeeCCCCcEEEEEEee
Confidence             0122222311111111112210 011124558999999999998543

>COG4946 Uncharacterized protein related to the periplasmic component of the Tol biopolymer transport system [Function unknown]

Probab=97.65  E-value=0.022  Score=48.08  Aligned_cols=51  Identities=20%  Similarity=0.128  Sum_probs=43.7

Q ss_pred             eEEEEeCCCCeeEEeeccccccceEEEcCCCCEEEEEEcCCCeEEEEEeecC
Q 026118          133 VLLKYDPSTNQTSLVLDGLYFANGVALSEDERFLVVCESWKFRCVKHFLKVS  184 (243)
Q Consensus       133 ~v~~~~~~~~~~~~~~~~~~~~~gi~~~~dg~~l~v~~~~~~~i~~~~~~~~  184 (243)
                      .|-.||.++++.+++..++.....+.++++|+.+.+++ .+..|+.++++++
T Consensus       383 ~l~iyd~~~~e~kr~e~~lg~I~av~vs~dGK~~vvaN-dr~el~vididng  433 (668)
T COG4946         383 KLGIYDKDGGEVKRIEKDLGNIEAVKVSPDGKKVVVAN-DRFELWVIDIDNG  433 (668)
T ss_pred             eEEEEecCCceEEEeeCCccceEEEEEcCCCcEEEEEc-CceEEEEEEecCC
Confidence            57788888888888888888888999999999888886 4678999999864

>PRK02888 nitrous-oxide reductase; Validated

Probab=97.64  E-value=0.0072  Score=53.18  Aligned_cols=198  Identities=12%  Similarity=0.072  Sum_probs=106.7

Q ss_pred             CcccEEEcCCC-cEEEEeC----CCcEEEEcc-CCceeEecccCCccccceEEccCCCEEEEEeCCCcEEEEe-cC----
Q 026118           11 HPEDVSVDGNG-VLYTATG----DGWIKRMHP-NGTWEDWHQVGSQSLLGLTTTKENNVIIVCDSQQGLLKVS-EE----   79 (243)
Q Consensus        11 ~p~~i~~d~~g-~l~~~~~----~~~i~~~~~-~g~~~~~~~~~~~~~~~i~~~~~g~l~~v~~~~~gl~~~~-~~----   79 (243)
                      +|..+.++++| .+|++..    ...+..++. +.......    ++....+..++|+..++.  .+.|..+| .+    
T Consensus       236 npd~v~~spdGk~afvTsyNsE~G~tl~em~a~e~d~~vvf----ni~~iea~vkdGK~~~V~--gn~V~VID~~t~~~~  309 (635)
T PRK02888        236 NLDNVDTDYDGKYAFSTCYNSEEGVTLAEMMAAERDWVVVF----NIARIEEAVKAGKFKTIG--GSKVPVVDGRKAANA  309 (635)
T ss_pred             CcccceECCCCCEEEEeccCcccCcceeeeccccCceEEEE----chHHHHHhhhCCCEEEEC--CCEEEEEECCccccC
Confidence            78888999877 5777752    223444442 11111111    111012334678875663  45688999 55    


Q ss_pred             CcEEEEeccCCCcccCCccEEEcCCCcEEEEeCCCCCCcccccccccccCCCceEEEEeCCCCee------------EEe
Q 026118           80 GVTVLVSQFNGSQLRFANDVIEASDGSLYFTVSSTKFTPAEYYLDLVSGEPHGVLLKYDPSTNQT------------SLV  147 (243)
Q Consensus        80 g~~~~~~~~~~~~~~~~~~l~~d~~G~l~v~~~~~~~~~~~~~~~~~~~~~~g~v~~~~~~~~~~------------~~~  147 (243)
                      +...+...+.+   ..|.++.++|||+..+++..                .++.|-.+|.++.+.            ..-
T Consensus       310 ~~~v~~yIPVG---KsPHGV~vSPDGkylyVank----------------lS~tVSVIDv~k~k~~~~~~~~~~~~vvae  370 (635)
T PRK02888        310 GSALTRYVPVP---KNPHGVNTSPDGKYFIANGK----------------LSPTVTVIDVRKLDDLFDGKIKPRDAVVAE  370 (635)
T ss_pred             CcceEEEEECC---CCccceEECCCCCEEEEeCC----------------CCCcEEEEEChhhhhhhhccCCccceEEEe
Confidence            32222222222   46889999999985555432                334566666653221            100


Q ss_pred             eccccccceEEEcCCCCEEEEEEcCCCeEEEEEeecC-----CCcceEEecc-CCCCCCCce------EECCCCCEEEEE
Q 026118          148 LDGLYFANGVALSEDERFLVVCESWKFRCVKHFLKVS-----GRTDREIFID-NLPGGPDNV------NLARDGSFWISI  215 (243)
Q Consensus       148 ~~~~~~~~gi~~~~dg~~l~v~~~~~~~i~~~~~~~~-----~~~~~~~~~~-~~~~~~~~i------~~d~~G~lwv~~  215 (243)
                      ..-...|--.+|+++|+ .|++-.-+.+|.+++++..     .-....++-. .....|.-+      ..+++|+..++.
T Consensus       371 vevGlGPLHTaFDg~G~-aytslf~dsqv~kwn~~~a~~~~~g~~~~~v~~k~dV~y~pgh~~~~~g~t~~~dgk~l~~~  449 (635)
T PRK02888        371 PELGLGPLHTAFDGRGN-AYTTLFLDSQIVKWNIEAAIRAYKGEKVDPIVQKLDVHYQPGHNHASMGETKEADGKWLVSL  449 (635)
T ss_pred             eccCCCcceEEECCCCC-EEEeEeecceeEEEehHHHHHHhccccCCcceecccCCCccceeeecCCCcCCCCCCEEEEc
Confidence            11134566789999998 9999888899999998641     0000111110 111122223      337899988888


Q ss_pred             ecCCchhhhhhhc-ChHHHH
Q 026118          216 IKMDPKGIQALQS-CKERKQ  234 (243)
Q Consensus       216 ~~~~~~~~~~~~~-~~~~~~  234 (243)
                      +......+-.+++ -|...|
T Consensus       450 nk~skdrfl~vgpl~pen~q  469 (635)
T PRK02888        450 NKFSKDRFLPVGPLHPENDQ  469 (635)
T ss_pred             cccccccccCCCCCCCCcce
Confidence            7765433333333 244444

>TIGR03300 assembly_YfgL outer membrane assembly lipoprotein YfgL

Probab=97.64  E-value=0.013  Score=49.25  Aligned_cols=137  Identities=15%  Similarity=0.150  Sum_probs=76.3

Q ss_pred             CCcEEEEeCCCcEEEEc-cCCceeEecccCCccccceEEccCCCEEEEEeCCCcEEEEe-cCC-cEEEEeccCCCcccCC
Q 026118           20 NGVLYTATGDGWIKRMH-PNGTWEDWHQVGSQSLLGLTTTKENNVIIVCDSQQGLLKVS-EEG-VTVLVSQFNGSQLRFA   96 (243)
Q Consensus        20 ~g~l~~~~~~~~i~~~~-~~g~~~~~~~~~~~~~~~i~~~~~g~l~~v~~~~~gl~~~~-~~g-~~~~~~~~~~~~~~~~   96 (243)
                      ++.+|++..++.|+.+| .+|+...-.........+++.+ ++.+ |++.....++.+| .+| ... .....+.....|
T Consensus        65 ~~~v~v~~~~g~v~a~d~~tG~~~W~~~~~~~~~~~p~v~-~~~v-~v~~~~g~l~ald~~tG~~~W-~~~~~~~~~~~p  141 (377)
T TIGR03300        65 GGKVYAADADGTVVALDAETGKRLWRVDLDERLSGGVGAD-GGLV-FVGTEKGEVIALDAEDGKELW-RAKLSSEVLSPP  141 (377)
T ss_pred             CCEEEEECCCCeEEEEEccCCcEeeeecCCCCcccceEEc-CCEE-EEEcCCCEEEEEECCCCcEee-eeccCceeecCC
Confidence            56899998888999999 5777543222112222144443 4455 8888767799999 678 332 221211111111


Q ss_pred             ccEEEcCCCcEEEEeCCCCCCcccccccccccCCCceEEEEeCCCCeeEEeecccc------ccceEEEcCCCCEEEEEE
Q 026118           97 NDVIEASDGSLYFTVSSTKFTPAEYYLDLVSGEPHGVLLKYDPSTNQTSLVLDGLY------FANGVALSEDERFLVVCE  170 (243)
Q Consensus        97 ~~l~~d~~G~l~v~~~~~~~~~~~~~~~~~~~~~~g~v~~~~~~~~~~~~~~~~~~------~~~gi~~~~dg~~l~v~~  170 (243)
                         .+ .++.+++..                  ..+.|+.+|+++|+.........      .....++. ++ .+|+..
T Consensus       142 ---~v-~~~~v~v~~------------------~~g~l~a~d~~tG~~~W~~~~~~~~~~~~~~~sp~~~-~~-~v~~~~  197 (377)
T TIGR03300       142 ---LV-ANGLVVVRT------------------NDGRLTALDAATGERLWTYSRVTPALTLRGSASPVIA-DG-GVLVGF  197 (377)
T ss_pred             ---EE-ECCEEEEEC------------------CCCeEEEEEcCCCceeeEEccCCCceeecCCCCCEEE-CC-EEEEEC
Confidence               22 356777763                  23579999998887643321111      01122222 33 366653


Q ss_pred             cCCCeEEEEEeecC
Q 026118          171 SWKFRCVKHFLKVS  184 (243)
Q Consensus       171 ~~~~~i~~~~~~~~  184 (243)
                       .++.++.+|+..+
T Consensus       198 -~~g~v~ald~~tG  210 (377)
T TIGR03300       198 -AGGKLVALDLQTG  210 (377)
T ss_pred             -CCCEEEEEEccCC
Confidence             4578888887643

Members of this protein family are YfgL, a lipoprotein component of a complex that acts protein insertion into the bacterial outer membrane. Other members of this complex are NlpB, YfiO, and YaeT. This protein contains multiple copies of a repeat that, in other contexts, are associated with binding of the coenzyme PQQ.

>KOG2055 consensus WD40 repeat protein [General function prediction only]

Probab=97.64  E-value=0.0025  Score=53.05  Aligned_cols=187  Identities=11%  Similarity=0.080  Sum_probs=104.8

Q ss_pred             ccEEEcCCCc-EEEEeCCCcEEEEc-cCCceeEecccCCccccceEEccCCCEEEEEeCCCcEEEEe-cCC-cEEEEecc
Q 026118           13 EDVSVDGNGV-LYTATGDGWIKRMH-PNGTWEDWHQVGSQSLLGLTTTKENNVIIVCDSQQGLLKVS-EEG-VTVLVSQF   88 (243)
Q Consensus        13 ~~i~~d~~g~-l~~~~~~~~i~~~~-~~g~~~~~~~~~~~~~~~i~~~~~g~l~~v~~~~~gl~~~~-~~g-~~~~~~~~   88 (243)
                      +...+.+++. |.+....|-|+.+. .++.+..-....+... ++.|+.|++.+|++...+.|+.+| ... +..... .
T Consensus       307 e~FeVShd~~fia~~G~~G~I~lLhakT~eli~s~KieG~v~-~~~fsSdsk~l~~~~~~GeV~v~nl~~~~~~~rf~-D  384 (514)
T KOG2055|consen  307 ERFEVSHDSNFIAIAGNNGHIHLLHAKTKELITSFKIEGVVS-DFTFSSDSKELLASGGTGEVYVWNLRQNSCLHRFV-D  384 (514)
T ss_pred             heeEecCCCCeEEEcccCceEEeehhhhhhhhheeeeccEEe-eEEEecCCcEEEEEcCCceEEEEecCCcceEEEEe-e
Confidence            4455666665 33444677788887 4554433223335555 889999999878887666799999 544 332222 1


Q ss_pred             CCCcccCCccEEEcCCCcEEEEeCCCCCCcccccccccccCCCceEEEEeCCCC----eeEEeec--c-ccccceEEEcC
Q 026118           89 NGSQLRFANDVIEASDGSLYFTVSSTKFTPAEYYLDLVSGEPHGVLLKYDPSTN----QTSLVLD--G-LYFANGVALSE  161 (243)
Q Consensus        89 ~~~~~~~~~~l~~d~~G~l~v~~~~~~~~~~~~~~~~~~~~~~g~v~~~~~~~~----~~~~~~~--~-~~~~~gi~~~~  161 (243)
                      ++  ..+-..+|.+.+|.++.+.+                 ..|-|-.||.++.    ..+++..  . ....+.|+|++
T Consensus       385 ~G--~v~gts~~~S~ng~ylA~GS-----------------~~GiVNIYd~~s~~~s~~PkPik~~dNLtt~Itsl~Fn~  445 (514)
T KOG2055|consen  385 DG--SVHGTSLCISLNGSYLATGS-----------------DSGIVNIYDGNSCFASTNPKPIKTVDNLTTAITSLQFNH  445 (514)
T ss_pred             cC--ccceeeeeecCCCceEEecc-----------------CcceEEEeccchhhccCCCCchhhhhhhheeeeeeeeCc
Confidence            22  12334678888888555432                 3456667775532    2222211  1 12356899999


Q ss_pred             CCCEEEEEEcCC-CeEEEEEeecCCCcceEEecc--CCCCCCCceEECCCCC-EEEEEecCCchh
Q 026118          162 DERFLVVCESWK-FRCVKHFLKVSGRTDREIFID--NLPGGPDNVNLARDGS-FWISIIKMDPKG  222 (243)
Q Consensus       162 dg~~l~v~~~~~-~~i~~~~~~~~~~~~~~~~~~--~~~~~~~~i~~d~~G~-lwv~~~~~~~~~  222 (243)
                      |.+.|-++.... +.+....+  +..+.+..|+.  ..-+++..|++++.|- |-+|+-.++..+
T Consensus       446 d~qiLAiaS~~~knalrLVHv--PS~TVFsNfP~~n~~vg~vtc~aFSP~sG~lAvGNe~grv~l  508 (514)
T KOG2055|consen  446 DAQILAIASRVKKNALRLVHV--PSCTVFSNFPTSNTKVGHVTCMAFSPNSGYLAVGNEAGRVHL  508 (514)
T ss_pred             chhhhhhhhhccccceEEEec--cceeeeccCCCCCCcccceEEEEecCCCceEEeecCCCceee
Confidence            999676664432 33332222  12222333322  2235788899999654 666665555443

>KOG0646 consensus WD40 repeat protein [General function prediction only]

Probab=97.62  E-value=0.014  Score=48.75  Aligned_cols=201  Identities=16%  Similarity=0.125  Sum_probs=112.5

Q ss_pred             cEEEcCCCcEEEEe-CCCcEEEEc-cCCceeEecccCCccccceEEccCCCEEEEEeCCCc-EEEEe-c-------CC-c
Q 026118           14 DVSVDGNGVLYTAT-GDGWIKRMH-PNGTWEDWHQVGSQSLLGLTTTKENNVIIVCDSQQG-LLKVS-E-------EG-V   81 (243)
Q Consensus        14 ~i~~d~~g~l~~~~-~~~~i~~~~-~~g~~~~~~~~~~~~~~~i~~~~~g~l~~v~~~~~g-l~~~~-~-------~g-~   81 (243)
                      +++-++.|...++. -.+.||.|. ..|....+....=.+.+.|.|..||.+ +++...+| |+.+. .       ++ .
T Consensus        86 al~s~n~G~~l~ag~i~g~lYlWelssG~LL~v~~aHYQ~ITcL~fs~dgs~-iiTgskDg~V~vW~l~~lv~a~~~~~~  164 (476)
T KOG0646|consen   86 ALASSNLGYFLLAGTISGNLYLWELSSGILLNVLSAHYQSITCLKFSDDGSH-IITGSKDGAVLVWLLTDLVSADNDHSV  164 (476)
T ss_pred             eeecCCCceEEEeecccCcEEEEEeccccHHHHHHhhccceeEEEEeCCCcE-EEecCCCccEEEEEEEeecccccCCCc
Confidence            45566888766555 778899998 677654433211123437889999998 55544444 44443 1       11 2


Q ss_pred             EEEEeccCCCcccCCccEEEcCCC---cEEEEeCCCCCCcccccccccccCCCceEEEEeCCCCeeEEeeccccccceEE
Q 026118           82 TVLVSQFNGSQLRFANDVIEASDG---SLYFTVSSTKFTPAEYYLDLVSGEPHGVLLKYDPSTNQTSLVLDGLYFANGVA  158 (243)
Q Consensus        82 ~~~~~~~~~~~~~~~~~l~~d~~G---~l~v~~~~~~~~~~~~~~~~~~~~~~g~v~~~~~~~~~~~~~~~~~~~~~gi~  158 (243)
                      +++.. +... ...+.++.+++.|   ++|-+.                  ....+..+|...+.+..-..-...++.++
T Consensus       165 ~p~~~-f~~H-tlsITDl~ig~Gg~~~rl~TaS------------------~D~t~k~wdlS~g~LLlti~fp~si~av~  224 (476)
T KOG0646|consen  165 KPLHI-FSDH-TLSITDLQIGSGGTNARLYTAS------------------EDRTIKLWDLSLGVLLLTITFPSSIKAVA  224 (476)
T ss_pred             cceee-eccC-cceeEEEEecCCCccceEEEec------------------CCceEEEEEeccceeeEEEecCCcceeEE
Confidence            22211 1111 1234455555543   333331                  22244555666565543333334567899


Q ss_pred             EcCCCCEEEEEEcCCCeEEEEEeecCC---C-----------cceEEeccCCCC-CCCceEECCCCCEEEEEecCCchhh
Q 026118          159 LSEDERFLVVCESWKFRCVKHFLKVSG---R-----------TDREIFIDNLPG-GPDNVNLARDGSFWISIIKMDPKGI  223 (243)
Q Consensus       159 ~~~dg~~l~v~~~~~~~i~~~~~~~~~---~-----------~~~~~~~~~~~~-~~~~i~~d~~G~lwv~~~~~~~~~~  223 (243)
                      +||.++.+|+.. ..+.|+..++.+-.   .           .+...+.....+ -...+++.-||++.++....+..+.
T Consensus       225 lDpae~~~yiGt-~~G~I~~~~~~~~~~~~~~v~~k~~~~~~t~~~~~~Gh~~~~~ITcLais~DgtlLlSGd~dg~Vcv  303 (476)
T KOG0646|consen  225 LDPAERVVYIGT-EEGKIFQNLLFKLSGQSAGVNQKGRHEENTQINVLVGHENESAITCLAISTDGTLLLSGDEDGKVCV  303 (476)
T ss_pred             EcccccEEEecC-CcceEEeeehhcCCcccccccccccccccceeeeeccccCCcceeEEEEecCccEEEeeCCCCCEEE
Confidence            999999899885 45788887764311   1           001111111111 2455899999999998887777666


Q ss_pred             hhhhcChHHHHHH
Q 026118          224 QALQSCKERKQAV  236 (243)
Q Consensus       224 ~~~~~~~~~~~~~  236 (243)
                      ..+.+...+|.+.
T Consensus       304 Wdi~S~Q~iRtl~  316 (476)
T KOG0646|consen  304 WDIYSKQCIRTLQ  316 (476)
T ss_pred             EecchHHHHHHHh
Confidence            6566666666655

>KOG1274 consensus WD40 repeat protein [General function prediction only]

Probab=97.61  E-value=0.011  Score=53.31  Aligned_cols=152  Identities=12%  Similarity=0.167  Sum_probs=91.3

Q ss_pred             cccEEEcCCCcEEE-EeCCCcEEEEc-cCC-ceeEecccCCccccceEEccCCCEEEEEeCCCcEEEEe-cCC-cEEEEe
Q 026118           12 PEDVSVDGNGVLYT-ATGDGWIKRMH-PNG-TWEDWHQVGSQSLLGLTTTKENNVIIVCDSQQGLLKVS-EEG-VTVLVS   86 (243)
Q Consensus        12 p~~i~~d~~g~l~~-~~~~~~i~~~~-~~g-~~~~~~~~~~~~~~~i~~~~~g~l~~v~~~~~gl~~~~-~~g-~~~~~~   86 (243)
                      ...++++.+|.+.+ |..+-.|-.++ .+. +.+..... ..|+.++.++|++++|.+....+.|..++ .++ ......
T Consensus        99 ~r~~~v~g~g~~iaagsdD~~vK~~~~~D~s~~~~lrgh-~apVl~l~~~p~~~fLAvss~dG~v~iw~~~~~~~~~tl~  177 (933)
T KOG1274|consen   99 IRDLAVSGSGKMIAAGSDDTAVKLLNLDDSSQEKVLRGH-DAPVLQLSYDPKGNFLAVSSCDGKVQIWDLQDGILSKTLT  177 (933)
T ss_pred             ceEEEEecCCcEEEeecCceeEEEEeccccchheeeccc-CCceeeeeEcCCCCEEEEEecCceEEEEEcccchhhhhcc
Confidence            34678888886554 44666677776 333 33333332 23444899999999977777666677777 666 322211


Q ss_pred             ccCC---Cc-ccCCccEEEcCCC-cEEEEeCCCCCCcccccccccccCCCceEEEEeCCCCeeEEeecc-c--cccceEE
Q 026118           87 QFNG---SQ-LRFANDVIEASDG-SLYFTVSSTKFTPAEYYLDLVSGEPHGVLLKYDPSTNQTSLVLDG-L--YFANGVA  158 (243)
Q Consensus        87 ~~~~---~~-~~~~~~l~~d~~G-~l~v~~~~~~~~~~~~~~~~~~~~~~g~v~~~~~~~~~~~~~~~~-~--~~~~gi~  158 (243)
                      ....   .. .....-+++.|+| ++.+.                  ...+.|-.|++++.+..-...+ .  ....-++
T Consensus       178 ~v~k~n~~~~s~i~~~~aW~Pk~g~la~~------------------~~d~~Vkvy~r~~we~~f~Lr~~~~ss~~~~~~  239 (933)
T KOG1274|consen  178 GVDKDNEFILSRICTRLAWHPKGGTLAVP------------------PVDNTVKVYSRKGWELQFKLRDKLSSSKFSDLQ  239 (933)
T ss_pred             cCCccccccccceeeeeeecCCCCeEEee------------------ccCCeEEEEccCCceeheeecccccccceEEEE
Confidence            1111   11 1223346788885 44443                  1335677788876654432221 1  1245689


Q ss_pred             EcCCCCEEEEEEcCCCeEEEEEeec
Q 026118          159 LSEDERFLVVCESWKFRCVKHFLKV  183 (243)
Q Consensus       159 ~~~dg~~l~v~~~~~~~i~~~~~~~  183 (243)
                      |+|.|+||-.+ ..++.|..+|.+.
T Consensus       240 wsPnG~YiAAs-~~~g~I~vWnv~t  263 (933)
T KOG1274|consen  240 WSPNGKYIAAS-TLDGQILVWNVDT  263 (933)
T ss_pred             EcCCCcEEeee-ccCCcEEEEeccc
Confidence            99999977766 4578999999874

>PF13360 PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A 3Q54_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A

Probab=97.60  E-value=0.014  Score=45.47  Aligned_cols=144  Identities=18%  Similarity=0.115  Sum_probs=81.0

Q ss_pred             CCCcEEEEeCCCcEEEEc-cCCceeEe-cccCC---ccccceEEccCCCEEEEEeCCCcEEEEe-cCC-cEEEEeccCCC
Q 026118           19 GNGVLYTATGDGWIKRMH-PNGTWEDW-HQVGS---QSLLGLTTTKENNVIIVCDSQQGLLKVS-EEG-VTVLVSQFNGS   91 (243)
Q Consensus        19 ~~g~l~~~~~~~~i~~~~-~~g~~~~~-~~~~~---~~~~~i~~~~~g~l~~v~~~~~gl~~~~-~~g-~~~~~~~~~~~   91 (243)
                      .++.+|+...++.|+.+| .+|+...- .....   .....+....+++.++++.....|+.+| .+| ...-.. ....
T Consensus        75 ~~~~v~v~~~~~~l~~~d~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~~~d~~tG~~~w~~~-~~~~  153 (238)
T PF13360_consen   75 DGGRVYVGTSDGSLYALDAKTGKVLWSIYLTSSPPAGVRSSSSPAVDGDRLYVGTSSGKLVALDPKTGKLLWKYP-VGEP  153 (238)
T ss_dssp             ETTEEEEEETTSEEEEEETTTSCEEEEEEE-SSCTCSTB--SEEEEETTEEEEEETCSEEEEEETTTTEEEEEEE-SSTT
T ss_pred             cccccccccceeeeEecccCCcceeeeeccccccccccccccCceEecCEEEEEeccCcEEEEecCCCcEEEEee-cCCC
Confidence            467888888777999999 67875543 11110   0110223333355548887677899999 788 322222 1111


Q ss_pred             ccc-------CCccEEEcCCCcEEEEeCCCCCCcccccccccccCCCceEEEEeCCCCeeEEeeccccccceEEEcCCCC
Q 026118           92 QLR-------FANDVIEASDGSLYFTVSSTKFTPAEYYLDLVSGEPHGVLLKYDPSTNQTSLVLDGLYFANGVALSEDER  164 (243)
Q Consensus        92 ~~~-------~~~~l~~d~~G~l~v~~~~~~~~~~~~~~~~~~~~~~g~v~~~~~~~~~~~~~~~~~~~~~gi~~~~dg~  164 (243)
                      ...       ...+-.+-.+|.+|++...                  +.++.+|..+++... .........+ ...++.
T Consensus       154 ~~~~~~~~~~~~~~~~~~~~~~v~~~~~~------------------g~~~~~d~~tg~~~w-~~~~~~~~~~-~~~~~~  213 (238)
T PF13360_consen  154 RGSSPISSFSDINGSPVISDGRVYVSSGD------------------GRVVAVDLATGEKLW-SKPISGIYSL-PSVDGG  213 (238)
T ss_dssp             -SS--EEEETTEEEEEECCTTEEEEECCT------------------SSEEEEETTTTEEEE-EECSS-ECEC-EECCCT
T ss_pred             CCCcceeeecccccceEEECCEEEEEcCC------------------CeEEEEECCCCCEEE-EecCCCccCC-ceeeCC
Confidence            100       0112223335688887533                  347777999887443 2222223331 335667


Q ss_pred             EEEEEEcCCCeEEEEEeecC
Q 026118          165 FLVVCESWKFRCVKHFLKVS  184 (243)
Q Consensus       165 ~l~v~~~~~~~i~~~~~~~~  184 (243)
                      .||+.+ ..+.|+.+|+.++
T Consensus       214 ~l~~~~-~~~~l~~~d~~tG  232 (238)
T PF13360_consen  214 TLYVTS-SDGRLYALDLKTG  232 (238)
T ss_dssp             EEEEEE-TTTEEEEEETTTT
T ss_pred             EEEEEe-CCCEEEEEECCCC
Confidence            799987 6789999997653

...

>PF08662 eIF2A: Eukaryotic translation initiation factor eIF2A; InterPro: IPR013979 This entry contains beta propellor domains found in eukaryotic translation initiation factors and TolB domain-containing proteins

Probab=97.59  E-value=0.015  Score=44.10  Aligned_cols=133  Identities=15%  Similarity=0.074  Sum_probs=75.0

Q ss_pred             cEEEEc-cCCceeEecccCCccccceEEccCCCEEEEEeC--CCcEEEEecCCcEEEEeccCCCcccCCccEEEcCCCcE
Q 026118           31 WIKRMH-PNGTWEDWHQVGSQSLLGLTTTKENNVIIVCDS--QQGLLKVSEEGVTVLVSQFNGSQLRFANDVIEASDGSL  107 (243)
Q Consensus        31 ~i~~~~-~~g~~~~~~~~~~~~~~~i~~~~~g~l~~v~~~--~~gl~~~~~~g~~~~~~~~~~~~~~~~~~l~~d~~G~l  107 (243)
                      .|++++ .+.....+......+...++.+|+|+.+.+...  ...+..++..+ +.+.. ..   ....+.|..+|+|++
T Consensus        40 ~l~~~~~~~~~~~~i~l~~~~~I~~~~WsP~g~~favi~g~~~~~v~lyd~~~-~~i~~-~~---~~~~n~i~wsP~G~~  114 (194)
T PF08662_consen   40 ELFYLNEKNIPVESIELKKEGPIHDVAWSPNGNEFAVIYGSMPAKVTLYDVKG-KKIFS-FG---TQPRNTISWSPDGRF  114 (194)
T ss_pred             EEEEEecCCCccceeeccCCCceEEEEECcCCCEEEEEEccCCcccEEEcCcc-cEeEe-ec---CCCceEEEECCCCCE
Confidence            467776 334444433322223338899999987344432  23466666333 11111 11   134567899999997


Q ss_pred             EEEeCCCCCCcccccccccccCCCceEEEEeCCCCeeEEeeccccccceEEEcCCCCEEEEEEcC-----CCeEEEEEee
Q 026118          108 YFTVSSTKFTPAEYYLDLVSGEPHGVLLKYDPSTNQTSLVLDGLYFANGVALSEDERFLVVCESW-----KFRCVKHFLK  182 (243)
Q Consensus       108 ~v~~~~~~~~~~~~~~~~~~~~~~g~v~~~~~~~~~~~~~~~~~~~~~gi~~~~dg~~l~v~~~~-----~~~i~~~~~~  182 (243)
                      .+....              +...|.|..+|.++.+.... ........+++||+|+++..+...     ++.+..++.+
T Consensus       115 l~~~g~--------------~n~~G~l~~wd~~~~~~i~~-~~~~~~t~~~WsPdGr~~~ta~t~~r~~~dng~~Iw~~~  179 (194)
T PF08662_consen  115 LVLAGF--------------GNLNGDLEFWDVRKKKKIST-FEHSDATDVEWSPDGRYLATATTSPRLRVDNGFKIWSFQ  179 (194)
T ss_pred             EEEEEc--------------cCCCcEEEEEECCCCEEeec-cccCcEEEEEEcCCCCEEEEEEeccceeccccEEEEEec
Confidence            765321              11335688888874433221 223346789999999988776542     3555666655


Q ss_pred             c
Q 026118          183 V  183 (243)
Q Consensus       183 ~  183 (243)
                      +
T Consensus       180 G  180 (194)
T PF08662_consen  180 G  180 (194)
T ss_pred             C
Confidence            5

>PRK11138 outer membrane biogenesis protein BamB; Provisional

Probab=97.57  E-value=0.006  Score=51.65  Aligned_cols=132  Identities=14%  Similarity=0.182  Sum_probs=77.4

Q ss_pred             CCcEEEEeCCCcEEEEc-cCCceeEecccCCccccceEEccCCCEEEEEeCCCcEEEEe-cCCcEEEEec-cCCCcccCC
Q 026118           20 NGVLYTATGDGWIKRMH-PNGTWEDWHQVGSQSLLGLTTTKENNVIIVCDSQQGLLKVS-EEGVTVLVSQ-FNGSQLRFA   96 (243)
Q Consensus        20 ~g~l~~~~~~~~i~~~~-~~g~~~~~~~~~~~~~~~i~~~~~g~l~~v~~~~~gl~~~~-~~g~~~~~~~-~~~~~~~~~   96 (243)
                      ++.+|++..++.++.+| .+|+.. |......+. .++. .++++ |+++..+.++.++ .+|....... .......  
T Consensus       256 ~~~vy~~~~~g~l~ald~~tG~~~-W~~~~~~~~-~~~~-~~~~v-y~~~~~g~l~ald~~tG~~~W~~~~~~~~~~~--  329 (394)
T PRK11138        256 GGVVYALAYNGNLVALDLRSGQIV-WKREYGSVN-DFAV-DGGRI-YLVDQNDRVYALDTRGGVELWSQSDLLHRLLT--  329 (394)
T ss_pred             CCEEEEEEcCCeEEEEECCCCCEE-EeecCCCcc-CcEE-ECCEE-EEEcCCCeEEEEECCCCcEEEcccccCCCccc--
Confidence            57899888888999999 466643 332222223 3333 24556 9988777899999 6773322211 1111111  


Q ss_pred             ccEEEcCCCcEEEEeCCCCCCcccccccccccCCCceEEEEeCCCCeeEEeec--cccccceEEEcCCCCEEEEEEcCCC
Q 026118           97 NDVIEASDGSLYFTVSSTKFTPAEYYLDLVSGEPHGVLLKYDPSTNQTSLVLD--GLYFANGVALSEDERFLVVCESWKF  174 (243)
Q Consensus        97 ~~l~~d~~G~l~v~~~~~~~~~~~~~~~~~~~~~~g~v~~~~~~~~~~~~~~~--~~~~~~gi~~~~dg~~l~v~~~~~~  174 (243)
                       ..++ .+|.+|+++.                  .|.|+.+|+++|+...-..  ........++. +++ ||+.. .++
T Consensus       330 -sp~v-~~g~l~v~~~------------------~G~l~~ld~~tG~~~~~~~~~~~~~~s~P~~~-~~~-l~v~t-~~G  386 (394)
T PRK11138        330 -APVL-YNGYLVVGDS------------------EGYLHWINREDGRFVAQQKVDSSGFLSEPVVA-DDK-LLIQA-RDG  386 (394)
T ss_pred             -CCEE-ECCEEEEEeC------------------CCEEEEEECCCCCEEEEEEcCCCcceeCCEEE-CCE-EEEEe-CCc
Confidence             2222 3688999853                  3689999999887653221  11122223332 454 99985 457


Q ss_pred             eEEEEE
Q 026118          175 RCVKHF  180 (243)
Q Consensus       175 ~i~~~~  180 (243)
                      .|+.++
T Consensus       387 ~l~~~~  392 (394)
T PRK11138        387 TVYAIT  392 (394)
T ss_pred             eEEEEe
Confidence            888775

>PF13449 Phytase-like: Esterase-like activity of phytase

Probab=97.55  E-value=0.022  Score=47.01  Aligned_cols=170  Identities=18%  Similarity=0.192  Sum_probs=95.2

Q ss_pred             ccCCcccEEEc-CCCcEEEEeCCCc------EEEEc--c-CC---ceeE-----ecccCC--------ccccceEEccCC
Q 026118            8 IVNHPEDVSVD-GNGVLYTATGDGW------IKRMH--P-NG---TWED-----WHQVGS--------QSLLGLTTTKEN   61 (243)
Q Consensus         8 ~~~~p~~i~~d-~~g~l~~~~~~~~------i~~~~--~-~g---~~~~-----~~~~~~--------~~~~~i~~~~~g   61 (243)
                      ++.+-.+|+++ .+|++|+.++++.      ++.+.  . .+   .+..     .....+        .+. +|++.++|
T Consensus        18 ~~GGlSgl~~~~~~~~~~avSD~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~~G~~~~~~~~D~E-gi~~~~~g   96 (326)
T PF13449_consen   18 PFGGLSGLDYDPDDGRFYAVSDRGPNKGPPRFYTFRIDYDQGGIGGVTILDMIPLRDPDGQPFPKNGLDPE-GIAVPPDG   96 (326)
T ss_pred             ccCcEeeEEEeCCCCEEEEEECCCCCCCCCcEEEEEeeccCCCccceEeccceeccCCCCCcCCcCCCChh-HeEEecCC
Confidence            35566789999 5777776666665      66554  1 11   1111     111111        345 78888889


Q ss_pred             CEEEEEeCCC-------cEEEEecCC-c-EEEE--ecc-------C-CCcccCCccEEEcCCCc-EEEEeCCCCCCcccc
Q 026118           62 NVIIVCDSQQ-------GLLKVSEEG-V-TVLV--SQF-------N-GSQLRFANDVIEASDGS-LYFTVSSTKFTPAEY  121 (243)
Q Consensus        62 ~l~~v~~~~~-------gl~~~~~~g-~-~~~~--~~~-------~-~~~~~~~~~l~~d~~G~-l~v~~~~~~~~~~~~  121 (243)
                      .+ ||+....       .|++++.+| . +.+.  ...       . ........+|++.++|+ +|++..+.-.+... 
T Consensus        97 ~~-~is~E~~~~~~~~p~I~~~~~~G~~~~~~~vP~~~~~~~~~~~~~~~N~G~E~la~~~dG~~l~~~~E~~l~~d~~-  174 (326)
T PF13449_consen   97 SF-WISSEGGRTGGIPPRIRRFDLDGRVIRRFPVPAAFLPDANGTSGRRNNRGFEGLAVSPDGRTLFAAMESPLKQDGP-  174 (326)
T ss_pred             CE-EEEeCCccCCCCCCEEEEECCCCcccceEccccccccccCccccccCCCCeEEEEECCCCCEEEEEECccccCCCc-
Confidence            98 8887644       588998556 3 3331  111       1 12345677899999998 88875431000000 


Q ss_pred             cccccccCCCceEEEEeCCC-Ce-eEEe---ec------cccccceEEEcCCCCEEEEEEcC-------CCeEEEEEee
Q 026118          122 YLDLVSGEPHGVLLKYDPST-NQ-TSLV---LD------GLYFANGVALSEDERFLVVCESW-------KFRCVKHFLK  182 (243)
Q Consensus       122 ~~~~~~~~~~g~v~~~~~~~-~~-~~~~---~~------~~~~~~gi~~~~dg~~l~v~~~~-------~~~i~~~~~~  182 (243)
                       .........-+|+++++.+ ++ ...+   ..      ....+..|+.-++++ ++|.+..       ..+|+++++.
T Consensus       175 -~~~~~~~~~~ri~~~d~~~~~~~~~~~~y~ld~~~~~~~~~~isd~~al~d~~-lLvLER~~~~~~~~~~ri~~v~l~  251 (326)
T PF13449_consen  175 -RANPDNGSPLRILRYDPKTPGEPVAEYAYPLDPPPTAPGDNGISDIAALPDGR-LLVLERDFSPGTGNYKRIYRVDLS  251 (326)
T ss_pred             -ccccccCceEEEEEecCCCCCccceEEEEeCCccccccCCCCceeEEEECCCc-EEEEEccCCCCccceEEEEEEEcc
Confidence             0000011124788999875 21 2222   11      234455677788998 8888764       3456777764

>PTZ00421 coronin; Provisional

Probab=97.52  E-value=0.052  Score=47.34  Aligned_cols=150  Identities=15%  Similarity=0.101  Sum_probs=87.6

Q ss_pred             cccEEEcC-CCc-EEEEeCCCcEEEEc-cCCc--------eeEecccCCccccceEEccCC-CEEEEEeCCCcEEEEe-c
Q 026118           12 PEDVSVDG-NGV-LYTATGDGWIKRMH-PNGT--------WEDWHQVGSQSLLGLTTTKEN-NVIIVCDSQQGLLKVS-E   78 (243)
Q Consensus        12 p~~i~~d~-~g~-l~~~~~~~~i~~~~-~~g~--------~~~~~~~~~~~~~~i~~~~~g-~l~~v~~~~~gl~~~~-~   78 (243)
                      -.++++.+ ++. |..+..++.|..++ +++.        +..+... ......+.+++++ ++|..+..+.-|..+| .
T Consensus        78 V~~v~fsP~d~~~LaSgS~DgtIkIWdi~~~~~~~~~~~~l~~L~gH-~~~V~~l~f~P~~~~iLaSgs~DgtVrIWDl~  156 (493)
T PTZ00421         78 IIDVAFNPFDPQKLFTASEDGTIMGWGIPEEGLTQNISDPIVHLQGH-TKKVGIVSFHPSAMNVLASAGADMVVNVWDVE  156 (493)
T ss_pred             EEEEEEcCCCCCEEEEEeCCCEEEEEecCCCccccccCcceEEecCC-CCcEEEEEeCcCCCCEEEEEeCCCEEEEEECC
Confidence            34688887 665 55666888898888 3321        1112111 2223378899875 5645555544566777 5


Q ss_pred             CC-cEEEEeccCCCcccCCccEEEcCCCcEEEEeCCCCCCcccccccccccCCCceEEEEeCCCCeeEEeeccc--cccc
Q 026118           79 EG-VTVLVSQFNGSQLRFANDVIEASDGSLYFTVSSTKFTPAEYYLDLVSGEPHGVLLKYDPSTNQTSLVLDGL--YFAN  155 (243)
Q Consensus        79 ~g-~~~~~~~~~~~~~~~~~~l~~d~~G~l~v~~~~~~~~~~~~~~~~~~~~~~g~v~~~~~~~~~~~~~~~~~--~~~~  155 (243)
                      ++ .....   .. ....+.++++.++|++.++.+                 ..+.|..+|+.+++........  ....
T Consensus       157 tg~~~~~l---~~-h~~~V~sla~spdG~lLatgs-----------------~Dg~IrIwD~rsg~~v~tl~~H~~~~~~  215 (493)
T PTZ00421        157 RGKAVEVI---KC-HSDQITSLEWNLDGSLLCTTS-----------------KDKKLNIIDPRDGTIVSSVEAHASAKSQ  215 (493)
T ss_pred             CCeEEEEE---cC-CCCceEEEEEECCCCEEEEec-----------------CCCEEEEEECCCCcEEEEEecCCCCcce
Confidence            55 22111   11 123467889999999877643                 2457888898876643322221  2234


Q ss_pred             eEEEcCCCCEEEEEEc---CCCeEEEEEeec
Q 026118          156 GVALSEDERFLVVCES---WKFRCVKHFLKV  183 (243)
Q Consensus       156 gi~~~~dg~~l~v~~~---~~~~i~~~~~~~  183 (243)
                      .+.+.+++..+..+..   .++.|..||+..
T Consensus       216 ~~~w~~~~~~ivt~G~s~s~Dr~VklWDlr~  246 (493)
T PTZ00421        216 RCLWAKRKDLIITLGCSKSQQRQIMLWDTRK  246 (493)
T ss_pred             EEEEcCCCCeEEEEecCCCCCCeEEEEeCCC
Confidence            5677787775554432   246788888753

>KOG1273 consensus WD40 repeat protein [General function prediction only]

Probab=97.52  E-value=0.014  Score=46.65  Aligned_cols=151  Identities=14%  Similarity=0.114  Sum_probs=91.8

Q ss_pred             cccEEEcCCCcEEEEe-CCCcEEEEc-cCCc-eeEecccCCccccceEEcc-CCCEEEEEeCCCcEEEEe-cCC-cEEEE
Q 026118           12 PEDVSVDGNGVLYTAT-GDGWIKRMH-PNGT-WEDWHQVGSQSLLGLTTTK-ENNVIIVCDSQQGLLKVS-EEG-VTVLV   85 (243)
Q Consensus        12 p~~i~~d~~g~l~~~~-~~~~i~~~~-~~g~-~~~~~~~~~~~~~~i~~~~-~g~l~~v~~~~~gl~~~~-~~g-~~~~~   85 (243)
                      -.++++.++|+..++. .+..|..+| ..|. ...+..  ..|.++..+.| +.+...++.....-+.++ .+. .+.+.
T Consensus        68 i~sl~WS~dgr~LltsS~D~si~lwDl~~gs~l~rirf--~spv~~~q~hp~k~n~~va~~~~~sp~vi~~s~~~h~~Lp  145 (405)
T KOG1273|consen   68 ITSLCWSRDGRKLLTSSRDWSIKLWDLLKGSPLKRIRF--DSPVWGAQWHPRKRNKCVATIMEESPVVIDFSDPKHSVLP  145 (405)
T ss_pred             eeEEEecCCCCEeeeecCCceeEEEeccCCCceeEEEc--cCccceeeeccccCCeEEEEEecCCcEEEEecCCceeecc
Confidence            3569999999866554 777888888 4554 333332  34554666654 445523443444444444 334 44455


Q ss_pred             eccCCCcccCCccEEEcCCCcEEEEeCCCCCCcccccccccccCCCceEEEEeCCCCeeEEee--ccccccceEEEcCCC
Q 026118           86 SQFNGSQLRFANDVIEASDGSLYFTVSSTKFTPAEYYLDLVSGEPHGVLLKYDPSTNQTSLVL--DGLYFANGVALSEDE  163 (243)
Q Consensus        86 ~~~~~~~~~~~~~l~~d~~G~l~v~~~~~~~~~~~~~~~~~~~~~~g~v~~~~~~~~~~~~~~--~~~~~~~gi~~~~dg  163 (243)
                      ...++.....+....+|+.|++.++.                 ...|.+..|+..+-+.....  ........|.++..|
T Consensus       146 ~d~d~dln~sas~~~fdr~g~yIitG-----------------tsKGkllv~~a~t~e~vas~rits~~~IK~I~~s~~g  208 (405)
T KOG1273|consen  146 KDDDGDLNSSASHGVFDRRGKYIITG-----------------TSKGKLLVYDAETLECVASFRITSVQAIKQIIVSRKG  208 (405)
T ss_pred             CCCccccccccccccccCCCCEEEEe-----------------cCcceEEEEecchheeeeeeeechheeeeEEEEeccC
Confidence            55555444455555788999866652                 23578999998866543321  122445678999999


Q ss_pred             CEEEEEEcCCCeEEEEEee
Q 026118          164 RFLVVCESWKFRCVKHFLK  182 (243)
Q Consensus       164 ~~l~v~~~~~~~i~~~~~~  182 (243)
                      + .++.++.+..|..|+..
T Consensus       209 ~-~liiNtsDRvIR~ye~~  226 (405)
T KOG1273|consen  209 R-FLIINTSDRVIRTYEIS  226 (405)
T ss_pred             c-EEEEecCCceEEEEehh
Confidence            9 56666777778878765

>PF01436 NHL: NHL repeat; InterPro: IPR001258 The NHL repeat, named after NCL-1, HT2A and Lin-41, is found largely in a large number of eukaryotic and prokaryotic proteins

Probab=97.51  E-value=0.00022  Score=35.78  Aligned_cols=27  Identities=26%  Similarity=0.407  Sum_probs=23.8

Q ss_pred             cccceEEEcCCCCEEEEEEcCCCeEEEE
Q 026118          152 YFANGVALSEDERFLVVCESWKFRCVKH  179 (243)
Q Consensus       152 ~~~~gi~~~~dg~~l~v~~~~~~~i~~~  179 (243)
                      ..|.|++++++|+ +||++..+++|.+|
T Consensus         2 ~~P~gvav~~~g~-i~VaD~~n~rV~vf   28 (28)
T PF01436_consen    2 NYPHGVAVDSDGN-IYVADSGNHRVQVF   28 (28)
T ss_dssp             SSEEEEEEETTSE-EEEEECCCTEEEEE
T ss_pred             cCCcEEEEeCCCC-EEEEECCCCEEEEC
Confidence            4689999998888 99999999998865

For example, the repeat is found in a variety of enzymes of the copper type II, ascorbate-dependent monooxygenase family which catalyse the C terminus alpha-amidation of biological peptides []. In many it occurs in tandem arrays, for example in the ringfinger beta-box, coiled-coil (RBCC) eukaryotic growth regulators []. The 'Brain Tumor' protein (Brat) is one such growth regulator that contains a 6-bladed NHL-repeat beta-propeller [, ]. The NHL repeats are also found in serine/threonine protein kinase (STPK) in diverse range of pathogenic bacteria. These STPK are transmembrane receptors with a intracellular N-terminal kinase domain and extracellular C-terminal sensor domain. In the STPK, PknD, from Mycobacterium tuberculosis, the sensor domain forms a rigid, six-bladed b-propeller composed of NHL repeats with a flexible tether to the transmembrane domain.; GO: 0005515 protein binding; PDB: 3FVZ_A 3FW0_A 1RWL_A 1RWI_A 1Q7F_A.

>PLN00033 photosystem II stability/assembly factor; Provisional

Probab=97.51  E-value=0.018  Score=48.61  Aligned_cols=144  Identities=13%  Similarity=0.074  Sum_probs=82.7

Q ss_pred             EEEcCCCcEEEEeCCCcEEEEccCCc--eeEecccCCccccceEEccCCCEEEEEeCCCcEEEEecCC-cE---EEEecc
Q 026118           15 VSVDGNGVLYTATGDGWIKRMHPNGT--WEDWHQVGSQSLLGLTTTKENNVIIVCDSQQGLLKVSEEG-VT---VLVSQF   88 (243)
Q Consensus        15 i~~d~~g~l~~~~~~~~i~~~~~~g~--~~~~~~~~~~~~~~i~~~~~g~l~~v~~~~~gl~~~~~~g-~~---~~~~~~   88 (243)
                      +...++|.+++....|.+++-..+|.  +............++.+.++|.+ |++....++++-..+| ..   .+....
T Consensus       244 v~~~~dG~~~~vg~~G~~~~s~d~G~~~W~~~~~~~~~~l~~v~~~~dg~l-~l~g~~G~l~~S~d~G~~~~~~~f~~~~  322 (398)
T PLN00033        244 VNRSPDGDYVAVSSRGNFYLTWEPGQPYWQPHNRASARRIQNMGWRADGGL-WLLTRGGGLYVSKGTGLTEEDFDFEEAD  322 (398)
T ss_pred             EEEcCCCCEEEEECCccEEEecCCCCcceEEecCCCccceeeeeEcCCCCE-EEEeCCceEEEecCCCCcccccceeecc
Confidence            45567787777766677777665554  35544433333337888899999 8887666666655444 11   222211


Q ss_pred             CCCcccCCccEEEcCCCcEEEEeCCCCCCcccccccccccCCCceEEEEeCCCCeeEEee--ccc-cccceEEEcCCCCE
Q 026118           89 NGSQLRFANDVIEASDGSLYFTVSSTKFTPAEYYLDLVSGEPHGVLLKYDPSTNQTSLVL--DGL-YFANGVALSEDERF  165 (243)
Q Consensus        89 ~~~~~~~~~~l~~d~~G~l~v~~~~~~~~~~~~~~~~~~~~~~g~v~~~~~~~~~~~~~~--~~~-~~~~gi~~~~dg~~  165 (243)
                      .......+.++.+.+++++|++-.                  .|.+++-...+..++...  ... ..-..+.|.++++ 
T Consensus       323 ~~~~~~~l~~v~~~~d~~~~a~G~------------------~G~v~~s~D~G~tW~~~~~~~~~~~~ly~v~f~~~~~-  383 (398)
T PLN00033        323 IKSRGFGILDVGYRSKKEAWAAGG------------------SGILLRSTDGGKSWKRDKGADNIAANLYSVKFFDDKK-  383 (398)
T ss_pred             cCCCCcceEEEEEcCCCcEEEEEC------------------CCcEEEeCCCCcceeEccccCCCCcceeEEEEcCCCc-
Confidence            111112356777888999999842                  244555444433334432  111 1234678777777 


Q ss_pred             EEEEEcCCCeEEEE
Q 026118          166 LVVCESWKFRCVKH  179 (243)
Q Consensus       166 l~v~~~~~~~i~~~  179 (243)
                      .|+.. .++.|.+|
T Consensus       384 g~~~G-~~G~il~~  396 (398)
T PLN00033        384 GFVLG-NDGVLLRY  396 (398)
T ss_pred             eEEEe-CCcEEEEe
Confidence            88875 35677766

>PF07433 DUF1513: Protein of unknown function (DUF1513); InterPro: IPR008311 There are currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function

Probab=97.48  E-value=0.027  Score=45.38  Aligned_cols=153  Identities=14%  Similarity=0.103  Sum_probs=84.8

Q ss_pred             ccccceEEccC-CCEEEEEeCC-CcEEEEe-cCC-cEEEEeccCCCcccCCccEEEcCCCcEEEEeCCCCCCcccccccc
Q 026118           50 QSLLGLTTTKE-NNVIIVCDSQ-QGLLKVS-EEG-VTVLVSQFNGSQLRFANDVIEASDGSLYFTVSSTKFTPAEYYLDL  125 (243)
Q Consensus        50 ~~~~~i~~~~~-g~l~~v~~~~-~gl~~~~-~~g-~~~~~~~~~~~~~~~~~~l~~d~~G~l~v~~~~~~~~~~~~~~~~  125 (243)
                      +.. +++.+|. +..+.++-.- .-++++| .+| ........++.  .+.-.-++++||++.+++.+.           
T Consensus         6 RgH-~~a~~p~~~~avafaRRPG~~~~v~D~~~g~~~~~~~a~~gR--HFyGHg~fs~dG~~LytTEnd-----------   71 (305)
T PF07433_consen    6 RGH-GVAAHPTRPEAVAFARRPGTFALVFDCRTGQLLQRLWAPPGR--HFYGHGVFSPDGRLLYTTEND-----------   71 (305)
T ss_pred             ccc-ceeeCCCCCeEEEEEeCCCcEEEEEEcCCCceeeEEcCCCCC--EEecCEEEcCCCCEEEEeccc-----------
Confidence            445 7788874 4443444322 2367888 666 33333222221  222234789999876665331           


Q ss_pred             cccCCCceEEEEeCCCCeeEEe---eccccccceEEEcCCCCEEEEEEcC-----------------CCeEEEEEeecCC
Q 026118          126 VSGEPHGVLLKYDPSTNQTSLV---LDGLYFANGVALSEDERFLVVCESW-----------------KFRCVKHFLKVSG  185 (243)
Q Consensus       126 ~~~~~~g~v~~~~~~~~~~~~~---~~~~~~~~gi~~~~dg~~l~v~~~~-----------------~~~i~~~~~~~~~  185 (243)
                       .....|.|-.||.. ..++++   ....-.|..|.+.+||++|.|++-+                 ..+|..+|...+.
T Consensus        72 -~~~g~G~IgVyd~~-~~~~ri~E~~s~GIGPHel~l~pDG~tLvVANGGI~Thpd~GR~kLNl~tM~psL~~ld~~sG~  149 (305)
T PF07433_consen   72 -YETGRGVIGVYDAA-RGYRRIGEFPSHGIGPHELLLMPDGETLVVANGGIETHPDSGRAKLNLDTMQPSLVYLDARSGA  149 (305)
T ss_pred             -cCCCcEEEEEEECc-CCcEEEeEecCCCcChhhEEEcCCCCEEEEEcCCCccCcccCceecChhhcCCceEEEecCCCc
Confidence             12345778888887 455554   3344568889999999889998531                 1233333333222


Q ss_pred             CcceEEeccC-CCCCCCceEECCCCCEEEEEecC
Q 026118          186 RTDREIFIDN-LPGGPDNVNLARDGSFWISIIKM  218 (243)
Q Consensus       186 ~~~~~~~~~~-~~~~~~~i~~d~~G~lwv~~~~~  218 (243)
                      +-....+... ..-...-|+++.+|.+|++...-
T Consensus       150 ll~q~~Lp~~~~~lSiRHLa~~~~G~V~~a~Q~q  183 (305)
T PF07433_consen  150 LLEQVELPPDLHQLSIRHLAVDGDGTVAFAMQYQ  183 (305)
T ss_pred             eeeeeecCccccccceeeEEecCCCcEEEEEecC
Confidence            2221111111 11134559999999999987543

>KOG0296 consensus Angio-associated migratory cell protein (contains WD40 repeats) [Function unknown]

Probab=97.44  E-value=0.044  Score=44.60  Aligned_cols=148  Identities=12%  Similarity=0.062  Sum_probs=83.9

Q ss_pred             cEEEcCCCcEEEEe-CCCcEEEEc-cCCceeEecccCCccccceEEccCCCEEEEEeCCCcEEEEe-cCC-cE-EEEecc
Q 026118           14 DVSVDGNGVLYTAT-GDGWIKRMH-PNGTWEDWHQVGSQSLLGLTTTKENNVIIVCDSQQGLLKVS-EEG-VT-VLVSQF   88 (243)
Q Consensus        14 ~i~~d~~g~l~~~~-~~~~i~~~~-~~g~~~~~~~~~~~~~~~i~~~~~g~l~~v~~~~~gl~~~~-~~g-~~-~~~~~~   88 (243)
                      +++..|+.+|.++. .+..-+.++ .+|.+..-..........+.|+.+|.+|..++..+.|..+. .+| .+ .+.   
T Consensus        69 avsl~P~~~l~aTGGgDD~AflW~~~~ge~~~eltgHKDSVt~~~FshdgtlLATGdmsG~v~v~~~stg~~~~~~~---  145 (399)
T KOG0296|consen   69 AVSLHPNNNLVATGGGDDLAFLWDISTGEFAGELTGHKDSVTCCSFSHDGTLLATGDMSGKVLVFKVSTGGEQWKLD---  145 (399)
T ss_pred             EEEeCCCCceEEecCCCceEEEEEccCCcceeEecCCCCceEEEEEccCceEEEecCCCccEEEEEcccCceEEEee---
Confidence            35556654544433 555667776 35553322222122333788999998844444444455666 555 22 222   


Q ss_pred             CCCcccCCccEEEcCCCcEEEEeCCCCCCcccccccccccCCCceEEEEeCCCCeeEEeeccccc-cceEEEcCCCCEEE
Q 026118           89 NGSQLRFANDVIEASDGSLYFTVSSTKFTPAEYYLDLVSGEPHGVLLKYDPSTNQTSLVLDGLYF-ANGVALSEDERFLV  167 (243)
Q Consensus        89 ~~~~~~~~~~l~~d~~G~l~v~~~~~~~~~~~~~~~~~~~~~~g~v~~~~~~~~~~~~~~~~~~~-~~gi~~~~dg~~l~  167 (243)
                        .....+.-|...|.+.++++-+                 ..|.||.+...++...++..+... .+.=.|.|+|+.+.
T Consensus       146 --~e~~dieWl~WHp~a~illAG~-----------------~DGsvWmw~ip~~~~~kv~~Gh~~~ct~G~f~pdGKr~~  206 (399)
T KOG0296|consen  146 --QEVEDIEWLKWHPRAHILLAGS-----------------TDGSVWMWQIPSQALCKVMSGHNSPCTCGEFIPDGKRIL  206 (399)
T ss_pred             --cccCceEEEEecccccEEEeec-----------------CCCcEEEEECCCcceeeEecCCCCCcccccccCCCceEE
Confidence              1122334567778888777632                 356788877765444444333332 23336779999676


Q ss_pred             EEEcCCCeEEEEEeecC
Q 026118          168 VCESWKFRCVKHFLKVS  184 (243)
Q Consensus       168 v~~~~~~~i~~~~~~~~  184 (243)
                      ... .++.|..+++...
T Consensus       207 tgy-~dgti~~Wn~ktg  222 (399)
T KOG0296|consen  207 TGY-DDGTIIVWNPKTG  222 (399)
T ss_pred             EEe-cCceEEEEecCCC
Confidence            664 5789999998753

>COG1520 FOG: WD40-like repeat [Function unknown]

Probab=97.43  E-value=0.027  Score=47.23  Aligned_cols=145  Identities=18%  Similarity=0.213  Sum_probs=83.5

Q ss_pred             EEcCCCcEEEEeCCCcEEEEccCCceeEecccCC---ccccceEEccCCCEEEEEeCCCcEEEEe-cCC-cEEEEeccCC
Q 026118           16 SVDGNGVLYTATGDGWIKRMHPNGTWEDWHQVGS---QSLLGLTTTKENNVIIVCDSQQGLLKVS-EEG-VTVLVSQFNG   90 (243)
Q Consensus        16 ~~d~~g~l~~~~~~~~i~~~~~~g~~~~~~~~~~---~~~~~i~~~~~g~l~~v~~~~~gl~~~~-~~g-~~~~~~~~~~   90 (243)
                      .++.+|.+|++..+|.|+.++++.-...|.....   ...++-.+..+|++ |+++....++.+| .+| ....... ..
T Consensus        64 ~~~~dg~v~~~~~~G~i~A~d~~~g~~~W~~~~~~~~~~~~~~~~~~~G~i-~~g~~~g~~y~ld~~~G~~~W~~~~-~~  141 (370)
T COG1520          64 PADGDGTVYVGTRDGNIFALNPDTGLVKWSYPLLGAVAQLSGPILGSDGKI-YVGSWDGKLYALDASTGTLVWSRNV-GG  141 (370)
T ss_pred             cEeeCCeEEEecCCCcEEEEeCCCCcEEecccCcCcceeccCceEEeCCeE-EEecccceEEEEECCCCcEEEEEec-CC
Confidence            3677899999988889999995443322322111   11213334448998 9998765599999 488 4433322 11


Q ss_pred             CcccCCccEEEcCCCcEEEEeCCCCCCcccccccccccCCCceEEEEeCCCCeeEEeec-----cccccceEEEcCCCCE
Q 026118           91 SQLRFANDVIEASDGSLYFTVSSTKFTPAEYYLDLVSGEPHGVLLKYDPSTNQTSLVLD-----GLYFANGVALSEDERF  165 (243)
Q Consensus        91 ~~~~~~~~l~~d~~G~l~v~~~~~~~~~~~~~~~~~~~~~~g~v~~~~~~~~~~~~~~~-----~~~~~~gi~~~~dg~~  165 (243)
                      .  ....+-++-.++.+|+.+.                  .+.++.++.++|+......     ......... ..++. 
T Consensus       142 ~--~~~~~~~v~~~~~v~~~s~------------------~g~~~al~~~tG~~~W~~~~~~~~~~~~~~~~~-~~~~~-  199 (370)
T COG1520         142 S--PYYASPPVVGDGTVYVGTD------------------DGHLYALNADTGTLKWTYETPAPLSLSIYGSPA-IASGT-  199 (370)
T ss_pred             C--eEEecCcEEcCcEEEEecC------------------CCeEEEEEccCCcEEEEEecCCccccccccCce-eecce-
Confidence            0  0111224456788888732                  3589999999887654311     111111222 34555 


Q ss_pred             EEEEEcC-CCeEEEEEeecC
Q 026118          166 LVVCESW-KFRCVKHFLKVS  184 (243)
Q Consensus       166 l~v~~~~-~~~i~~~~~~~~  184 (243)
                      +|+.... +..++.++...+
T Consensus       200 vy~~~~~~~~~~~a~~~~~G  219 (370)
T COG1520         200 VYVGSDGYDGILYALNAEDG  219 (370)
T ss_pred             EEEecCCCcceEEEEEccCC
Confidence            8877543 446888887543

>KOG1274 consensus WD40 repeat protein [General function prediction only]

Probab=97.43  E-value=0.023  Score=51.41  Aligned_cols=134  Identities=14%  Similarity=0.134  Sum_probs=79.3

Q ss_pred             EEEEeCCCcEEEEc-cCCc----eeEecccCCccccceEEccCCCEEEEEeCCCcEEEEe-cCC--cEEEEeccCCCccc
Q 026118           23 LYTATGDGWIKRMH-PNGT----WEDWHQVGSQSLLGLTTTKENNVIIVCDSQQGLLKVS-EEG--VTVLVSQFNGSQLR   94 (243)
Q Consensus        23 l~~~~~~~~i~~~~-~~g~----~~~~~~~~~~~~~~i~~~~~g~l~~v~~~~~gl~~~~-~~g--~~~~~~~~~~~~~~   94 (243)
                      +.+++.++.|.++. +.+.    ..++..    |...++++.+|+++.++..+..|-.++ .+.  .+++.. ..    .
T Consensus        69 f~~~s~~~tv~~y~fps~~~~~iL~Rftl----p~r~~~v~g~g~~iaagsdD~~vK~~~~~D~s~~~~lrg-h~----a  139 (933)
T KOG1274|consen   69 FLTGSEQNTVLRYKFPSGEEDTILARFTL----PIRDLAVSGSGKMIAAGSDDTAVKLLNLDDSSQEKVLRG-HD----A  139 (933)
T ss_pred             eEEeeccceEEEeeCCCCCccceeeeeec----cceEEEEecCCcEEEeecCceeEEEEeccccchheeecc-cC----C
Confidence            33444555565554 3332    333332    333788999999834444344666666 444  333322 11    2


Q ss_pred             CCccEEEcCCCcEEEEeCCCCCCcccccccccccCCCceEEEEeCCCCeeEEeeccc---------cccceEEEcCCCCE
Q 026118           95 FANDVIEASDGSLYFTVSSTKFTPAEYYLDLVSGEPHGVLLKYDPSTNQTSLVLDGL---------YFANGVALSEDERF  165 (243)
Q Consensus        95 ~~~~l~~d~~G~l~v~~~~~~~~~~~~~~~~~~~~~~g~v~~~~~~~~~~~~~~~~~---------~~~~gi~~~~dg~~  165 (243)
                      .+-++.++|.|++..+.+                 ..|.|+.++.+++.+....++.         .....++|+|+|..
T Consensus       140 pVl~l~~~p~~~fLAvss-----------------~dG~v~iw~~~~~~~~~tl~~v~k~n~~~~s~i~~~~aW~Pk~g~  202 (933)
T KOG1274|consen  140 PVLQLSYDPKGNFLAVSS-----------------CDGKVQIWDLQDGILSKTLTGVDKDNEFILSRICTRLAWHPKGGT  202 (933)
T ss_pred             ceeeeeEcCCCCEEEEEe-----------------cCceEEEEEcccchhhhhcccCCccccccccceeeeeeecCCCCe
Confidence            345788999998777633                 3578999999877655433221         12346899999665


Q ss_pred             EEEEEcCCCeEEEEEeec
Q 026118          166 LVVCESWKFRCVKHFLKV  183 (243)
Q Consensus       166 l~v~~~~~~~i~~~~~~~  183 (243)
                      +.+.. .++.|..|+..+
T Consensus       203 la~~~-~d~~Vkvy~r~~  219 (933)
T KOG1274|consen  203 LAVPP-VDNTVKVYSRKG  219 (933)
T ss_pred             EEeec-cCCeEEEEccCC
Confidence            65553 457888888764

>KOG2048 consensus WD40 repeat protein [General function prediction only]

Probab=97.42  E-value=0.028  Score=49.11  Aligned_cols=180  Identities=17%  Similarity=0.144  Sum_probs=100.2

Q ss_pred             cEEEcCCCcEE-EEe-CCCcEEEEccCCceeEeccc----CCccccceEEccCCCEEEEEeC-CCcEEEEe-cCC-cEEE
Q 026118           14 DVSVDGNGVLY-TAT-GDGWIKRMHPNGTWEDWHQV----GSQSLLGLTTTKENNVIIVCDS-QQGLLKVS-EEG-VTVL   84 (243)
Q Consensus        14 ~i~~d~~g~l~-~~~-~~~~i~~~~~~g~~~~~~~~----~~~~~~~i~~~~~g~l~~v~~~-~~gl~~~~-~~g-~~~~   84 (243)
                      +-+..|+|++. +++ .+=.||++.+++.++.....    ...+...+.+..|+++++++.. ...+..++ .+. .+.+
T Consensus       387 ~~aiSPdg~~Ia~st~~~~~iy~L~~~~~vk~~~v~~~~~~~~~a~~i~ftid~~k~~~~s~~~~~le~~el~~ps~kel  466 (691)
T KOG2048|consen  387 CAAISPDGNLIAISTVSRTKIYRLQPDPNVKVINVDDVPLALLDASAISFTIDKNKLFLVSKNIFSLEEFELETPSFKEL  466 (691)
T ss_pred             eeccCCCCCEEEEeeccceEEEEeccCcceeEEEeccchhhhccceeeEEEecCceEEEEecccceeEEEEecCcchhhh
Confidence            34556788654 454 55678999876654433211    0111214666666665566552 23466665 333 3333


Q ss_pred             EeccCCCcccCCccEEEcCCCcEEEEeCCCCCCcccccccccccCCCceEEEEeCCCCeeEEeecccc-ccceEEEcC-C
Q 026118           85 VSQFNGSQLRFANDVIEASDGSLYFTVSSTKFTPAEYYLDLVSGEPHGVLLKYDPSTNQTSLVLDGLY-FANGVALSE-D  162 (243)
Q Consensus        85 ~~~~~~~~~~~~~~l~~d~~G~l~v~~~~~~~~~~~~~~~~~~~~~~g~v~~~~~~~~~~~~~~~~~~-~~~gi~~~~-d  162 (243)
                      ........-..+..|+++++|+.+.+-+                 ..+.|+.|+.++++...+...+. ....++++| +
T Consensus       467 ~~~~~~~~~~~I~~l~~SsdG~yiaa~~-----------------t~g~I~v~nl~~~~~~~l~~rln~~vTa~~~~~~~  529 (691)
T KOG2048|consen  467 KSIQSQAKCPSISRLVVSSDGNYIAAIS-----------------TRGQIFVYNLETLESHLLKVRLNIDVTAAAFSPFV  529 (691)
T ss_pred             hccccccCCCcceeEEEcCCCCEEEEEe-----------------ccceEEEEEcccceeecchhccCcceeeeeccccc
Confidence            2211112335677889999998666532                 34689999999888776653333 334567774 3


Q ss_pred             CCEEEEEEcCCCeEEEEEeecCCCcce-----EEecc---CCCCCCCceEECCCCCE
Q 026118          163 ERFLVVCESWKFRCVKHFLKVSGRTDR-----EIFID---NLPGGPDNVNLARDGSF  211 (243)
Q Consensus       163 g~~l~v~~~~~~~i~~~~~~~~~~~~~-----~~~~~---~~~~~~~~i~~d~~G~l  211 (243)
                      .+.|.++. .+++++.|++....+++.     +.++.   .......++.+|+.+..
T Consensus       530 ~~~lvvat-s~nQv~efdi~~~~l~~ws~~nt~nlpk~~~~l~~~~~gisfd~~n~s  585 (691)
T KOG2048|consen  530 RNRLVVAT-SNNQVFEFDIEARNLTRWSKNNTRNLPKEPKTLIPGIPGISFDPKNSS  585 (691)
T ss_pred             cCcEEEEe-cCCeEEEEecchhhhhhhhhccccccccChhhcCCCCceEEeCCCCcc
Confidence            34477775 578999999853322221     11111   11223456888877653

>PRK11138 outer membrane biogenesis protein BamB; Provisional

Probab=97.42  E-value=0.014  Score=49.48  Aligned_cols=167  Identities=14%  Similarity=0.077  Sum_probs=88.3

Q ss_pred             CCcEEEEeCCCcEEEEc-cCCceeEecccCCcc------------ccceEEccCCCEEEEEeCCCcEEEEe-cCCcEEEE
Q 026118           20 NGVLYTATGDGWIKRMH-PNGTWEDWHQVGSQS------------LLGLTTTKENNVIIVCDSQQGLLKVS-EEGVTVLV   85 (243)
Q Consensus        20 ~g~l~~~~~~~~i~~~~-~~g~~~~~~~~~~~~------------~~~i~~~~~g~l~~v~~~~~gl~~~~-~~g~~~~~   85 (243)
                      ++.+|++..++.++.++ .+|+.. |......+            .....+ .++.+ |++...+.++.+| .+|.....
T Consensus       205 ~~~v~~~~~~g~v~a~d~~~G~~~-W~~~~~~~~~~~~~~~~~~~~~sP~v-~~~~v-y~~~~~g~l~ald~~tG~~~W~  281 (394)
T PRK11138        205 FGGAIVGGDNGRVSAVLMEQGQLI-WQQRISQPTGATEIDRLVDVDTTPVV-VGGVV-YALAYNGNLVALDLRSGQIVWK  281 (394)
T ss_pred             CCEEEEEcCCCEEEEEEccCChhh-heeccccCCCccchhcccccCCCcEE-ECCEE-EEEEcCCeEEEEECCCCCEEEe
Confidence            45678887778888888 456532 11110011            001122 24555 8888777899999 77732222


Q ss_pred             eccCCCcccCCccEEEcCCCcEEEEeCCCCCCcccccccccccCCCceEEEEeCCCCeeEEeecc--ccccceEEEcCCC
Q 026118           86 SQFNGSQLRFANDVIEASDGSLYFTVSSTKFTPAEYYLDLVSGEPHGVLLKYDPSTNQTSLVLDG--LYFANGVALSEDE  163 (243)
Q Consensus        86 ~~~~~~~~~~~~~l~~d~~G~l~v~~~~~~~~~~~~~~~~~~~~~~g~v~~~~~~~~~~~~~~~~--~~~~~gi~~~~dg  163 (243)
                      ....     .+..+++ .++++|+++.                  .+.|+.+|.++|+...-...  .....+.++. ++
T Consensus       282 ~~~~-----~~~~~~~-~~~~vy~~~~------------------~g~l~ald~~tG~~~W~~~~~~~~~~~sp~v~-~g  336 (394)
T PRK11138        282 REYG-----SVNDFAV-DGGRIYLVDQ------------------NDRVYALDTRGGVELWSQSDLLHRLLTAPVLY-NG  336 (394)
T ss_pred             ecCC-----CccCcEE-ECCEEEEEcC------------------CCeEEEEECCCCcEEEcccccCCCcccCCEEE-CC
Confidence            2111     1123333 3678999853                  36899999998865432111  1112223332 44


Q ss_pred             CEEEEEEcCCCeEEEEEeecCCCcceEEeccCCCCCCCceEECCCCCEEEEEecCC
Q 026118          164 RFLVVCESWKFRCVKHFLKVSGRTDREIFIDNLPGGPDNVNLARDGSFWISIIKMD  219 (243)
Q Consensus       164 ~~l~v~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~i~~d~~G~lwv~~~~~~  219 (243)
                       .+|+.+ .++.|+.++.+++.......+.  ..+......+ .+|+|||++.++.
T Consensus       337 -~l~v~~-~~G~l~~ld~~tG~~~~~~~~~--~~~~~s~P~~-~~~~l~v~t~~G~  387 (394)
T PRK11138        337 -YLVVGD-SEGYLHWINREDGRFVAQQKVD--SSGFLSEPVV-ADDKLLIQARDGT  387 (394)
T ss_pred             -EEEEEe-CCCEEEEEECCCCCEEEEEEcC--CCcceeCCEE-ECCEEEEEeCCce
Confidence             488886 4578999887654322211111  1112222233 3567999877654

>KOG0279 consensus G protein beta subunit-like protein [Signal transduction mechanisms]

Probab=97.39  E-value=0.042  Score=43.22  Aligned_cols=172  Identities=17%  Similarity=0.111  Sum_probs=97.0

Q ss_pred             EEEEeCCCcEEEEccC------CceeEecccCCccccceEEccCCCEEEEEeCCCcEEEEe-cCC-c-EEEEeccCCCcc
Q 026118           23 LYTATGDGWIKRMHPN------GTWEDWHQVGSQSLLGLTTTKENNVIIVCDSQQGLLKVS-EEG-V-TVLVSQFNGSQL   93 (243)
Q Consensus        23 l~~~~~~~~i~~~~~~------g~~~~~~~~~~~~~~~i~~~~~g~l~~v~~~~~gl~~~~-~~g-~-~~~~~~~~~~~~   93 (243)
                      |+.+..+..++.++.+      |.+.+.......-...++..+||++++.+.+++-+..+| .+| . +.+...     .
T Consensus        31 l~sasrDk~ii~W~L~~dd~~~G~~~r~~~GHsH~v~dv~~s~dg~~alS~swD~~lrlWDl~~g~~t~~f~GH-----~  105 (315)
T KOG0279|consen   31 LVSASRDKTIIVWKLTSDDIKYGVPVRRLTGHSHFVSDVVLSSDGNFALSASWDGTLRLWDLATGESTRRFVGH-----T  105 (315)
T ss_pred             EEEcccceEEEEEEeccCccccCceeeeeeccceEecceEEccCCceEEeccccceEEEEEecCCcEEEEEEec-----C
Confidence            3444466667666521      222222221122232788999999955555444456667 666 3 333221     1


Q ss_pred             cCCccEEEcCCCcEEEEeCCCCCCcccccccccccCCCceEEEEeCCCCeeEEeecc--ccccceEEEcCCC-CEEEEEE
Q 026118           94 RFANDVIEASDGSLYFTVSSTKFTPAEYYLDLVSGEPHGVLLKYDPSTNQTSLVLDG--LYFANGVALSEDE-RFLVVCE  170 (243)
Q Consensus        94 ~~~~~l~~d~~G~l~v~~~~~~~~~~~~~~~~~~~~~~g~v~~~~~~~~~~~~~~~~--~~~~~gi~~~~dg-~~l~v~~  170 (243)
                      .-+-++++++|.+-.++-+.                 ...|-.++..+.-.-.+..+  ..+.+.+.|+|.. +-+.+..
T Consensus       106 ~dVlsva~s~dn~qivSGSr-----------------DkTiklwnt~g~ck~t~~~~~~~~WVscvrfsP~~~~p~Ivs~  168 (315)
T KOG0279|consen  106 KDVLSVAFSTDNRQIVSGSR-----------------DKTIKLWNTLGVCKYTIHEDSHREWVSCVRFSPNESNPIIVSA  168 (315)
T ss_pred             CceEEEEecCCCceeecCCC-----------------cceeeeeeecccEEEEEecCCCcCcEEEEEEcCCCCCcEEEEc
Confidence            34558899999988887443                 23455555553322222322  4567889999986 4344555


Q ss_pred             cCCCeEEEEEeecCCCcceEEeccCCCCCCCceEECCCCCEEEEEecCC
Q 026118          171 SWKFRCVKHFLKVSGRTDREIFIDNLPGGPDNVNLARDGSFWISIIKMD  219 (243)
Q Consensus       171 ~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~i~~d~~G~lwv~~~~~~  219 (243)
                      ..+..|-.+|.++-.+.  ..+. +..++..-+++++||.|-.+...++
T Consensus       169 s~DktvKvWnl~~~~l~--~~~~-gh~~~v~t~~vSpDGslcasGgkdg  214 (315)
T KOG0279|consen  169 SWDKTVKVWNLRNCQLR--TTFI-GHSGYVNTVTVSPDGSLCASGGKDG  214 (315)
T ss_pred             cCCceEEEEccCCcchh--hccc-cccccEEEEEECCCCCEEecCCCCc
Confidence            66788888887753221  2222 3445666688888888777644333

>PF13449 Phytase-like: Esterase-like activity of phytase

Probab=97.39  E-value=0.025  Score=46.63  Aligned_cols=111  Identities=15%  Similarity=0.171  Sum_probs=64.5

Q ss_pred             CCccEEEcCCCcEEEEeCCCCCCcccccccccccCCCceEEEEeCCCCee-EEe--ecc-------------ccccceEE
Q 026118           95 FANDVIEASDGSLYFTVSSTKFTPAEYYLDLVSGEPHGVLLKYDPSTNQT-SLV--LDG-------------LYFANGVA  158 (243)
Q Consensus        95 ~~~~l~~d~~G~l~v~~~~~~~~~~~~~~~~~~~~~~g~v~~~~~~~~~~-~~~--~~~-------------~~~~~gi~  158 (243)
                      -+.+|++.++|.+|+++-...           .......|++++++ |++ +.+  ...             ....-+|+
T Consensus        86 D~Egi~~~~~g~~~is~E~~~-----------~~~~~p~I~~~~~~-G~~~~~~~vP~~~~~~~~~~~~~~~N~G~E~la  153 (326)
T PF13449_consen   86 DPEGIAVPPDGSFWISSEGGR-----------TGGIPPRIRRFDLD-GRVIRRFPVPAAFLPDANGTSGRRNNRGFEGLA  153 (326)
T ss_pred             ChhHeEEecCCCEEEEeCCcc-----------CCCCCCEEEEECCC-CcccceEccccccccccCccccccCCCCeEEEE
Confidence            456889988999999964310           00112579999988 554 222  111             11234799


Q ss_pred             EcCCCCEEEEEEcCC---------------CeEEEEEeecCC-CcceEEeccC------CCCCCCceEECCCCCEEEEEe
Q 026118          159 LSEDERFLVVCESWK---------------FRCVKHFLKVSG-RTDREIFIDN------LPGGPDNVNLARDGSFWISII  216 (243)
Q Consensus       159 ~~~dg~~l~v~~~~~---------------~~i~~~~~~~~~-~~~~~~~~~~------~~~~~~~i~~d~~G~lwv~~~  216 (243)
                      +++||+.||++....               -+|++|+..... ......+...      ....+..++.-++|+++|-..
T Consensus       154 ~~~dG~~l~~~~E~~l~~d~~~~~~~~~~~~ri~~~d~~~~~~~~~~~~y~ld~~~~~~~~~~isd~~al~d~~lLvLER  233 (326)
T PF13449_consen  154 VSPDGRTLFAAMESPLKQDGPRANPDNGSPLRILRYDPKTPGEPVAEYAYPLDPPPTAPGDNGISDIAALPDGRLLVLER  233 (326)
T ss_pred             ECCCCCEEEEEECccccCCCcccccccCceEEEEEecCCCCCccceEEEEeCCccccccCCCCceeEEEECCCcEEEEEc
Confidence            999999888875432               346667765421 1222222211      123455566667888888665


Q ss_pred             c
Q 026118          217 K  217 (243)
Q Consensus       217 ~  217 (243)
                      .
T Consensus       234 ~  234 (326)
T PF13449_consen  234 D  234 (326)
T ss_pred             c
Confidence            5

>PF01436 NHL: NHL repeat; InterPro: IPR001258 The NHL repeat, named after NCL-1, HT2A and Lin-41, is found largely in a large number of eukaryotic and prokaryotic proteins

Probab=97.36  E-value=0.00042  Score=34.74  Aligned_cols=27  Identities=33%  Similarity=0.647  Sum_probs=22.1

Q ss_pred             cCCcccEEEcCCCcEEEEe-CCCcEEEE
Q 026118            9 VNHPEDVSVDGNGVLYTAT-GDGWIKRM   35 (243)
Q Consensus         9 ~~~p~~i~~d~~g~l~~~~-~~~~i~~~   35 (243)
                      +..|.+|+++++|.||+++ .+.+|.++
T Consensus         1 f~~P~gvav~~~g~i~VaD~~n~rV~vf   28 (28)
T PF01436_consen    1 FNYPHGVAVDSDGNIYVADSGNHRVQVF   28 (28)
T ss_dssp             BSSEEEEEEETTSEEEEEECCCTEEEEE
T ss_pred             CcCCcEEEEeCCCCEEEEECCCCEEEEC
Confidence            4689999999999999998 56666543

For example, the repeat is found in a variety of enzymes of the copper type II, ascorbate-dependent monooxygenase family which catalyse the C terminus alpha-amidation of biological peptides []. In many it occurs in tandem arrays, for example in the ringfinger beta-box, coiled-coil (RBCC) eukaryotic growth regulators []. The 'Brain Tumor' protein (Brat) is one such growth regulator that contains a 6-bladed NHL-repeat beta-propeller [, ]. The NHL repeats are also found in serine/threonine protein kinase (STPK) in diverse range of pathogenic bacteria. These STPK are transmembrane receptors with a intracellular N-terminal kinase domain and extracellular C-terminal sensor domain. In the STPK, PknD, from Mycobacterium tuberculosis, the sensor domain forms a rigid, six-bladed b-propeller composed of NHL repeats with a flexible tether to the transmembrane domain.; GO: 0005515 protein binding; PDB: 3FVZ_A 3FW0_A 1RWL_A 1RWI_A 1Q7F_A.

>KOG1539 consensus WD repeat protein [General function prediction only]

Probab=97.35  E-value=0.015  Score=51.99  Aligned_cols=180  Identities=15%  Similarity=0.153  Sum_probs=100.6

Q ss_pred             CcccEEEcCCCc-EEEEeCCCcEEEEc-cCCce-eEec--ccCCccccceEEccCCCEEEEEeCCCcEEEEe--cCCcEE
Q 026118           11 HPEDVSVDGNGV-LYTATGDGWIKRMH-PNGTW-EDWH--QVGSQSLLGLTTTKENNVIIVCDSQQGLLKVS--EEGVTV   83 (243)
Q Consensus        11 ~p~~i~~d~~g~-l~~~~~~~~i~~~~-~~g~~-~~~~--~~~~~~~~~i~~~~~g~l~~v~~~~~gl~~~~--~~g~~~   83 (243)
                      ...+++++.-|+ .++|...|-|-+++ ..|-. ..|.  .....+..+++.|.-+++ .|+....|++.|.  .+.. .
T Consensus       450 ~~~av~vs~CGNF~~IG~S~G~Id~fNmQSGi~r~sf~~~~ah~~~V~gla~D~~n~~-~vsa~~~Gilkfw~f~~k~-l  527 (910)
T KOG1539|consen  450 NATAVCVSFCGNFVFIGYSKGTIDRFNMQSGIHRKSFGDSPAHKGEVTGLAVDGTNRL-LVSAGADGILKFWDFKKKV-L  527 (910)
T ss_pred             ceEEEEEeccCceEEEeccCCeEEEEEcccCeeecccccCccccCceeEEEecCCCce-EEEccCcceEEEEecCCcc-e
Confidence            345678888886 66777788888888 34432 2221  111234449999988888 6666678888776  3332 1


Q ss_pred             EEeccCCCcccCCccEEEcCCCcEEEEeCCCCCCcccccccccccCCCceEEEEeCCCCeeEE-eeccccccceEEEcCC
Q 026118           84 LVSQFNGSQLRFANDVIEASDGSLYFTVSSTKFTPAEYYLDLVSGEPHGVLLKYDPSTNQTSL-VLDGLYFANGVALSED  162 (243)
Q Consensus        84 ~~~~~~~~~~~~~~~l~~d~~G~l~v~~~~~~~~~~~~~~~~~~~~~~g~v~~~~~~~~~~~~-~~~~~~~~~gi~~~~d  162 (243)
                      +.. ..-  ...+.++.......+++.-                 ...-.|..||..+.++.+ +.......+.+.||+|
T Consensus       528 ~~~-l~l--~~~~~~iv~hr~s~l~a~~-----------------~ddf~I~vvD~~t~kvvR~f~gh~nritd~~FS~D  587 (910)
T KOG1539|consen  528 KKS-LRL--GSSITGIVYHRVSDLLAIA-----------------LDDFSIRVVDVVTRKVVREFWGHGNRITDMTFSPD  587 (910)
T ss_pred             eee-ecc--CCCcceeeeeehhhhhhhh-----------------cCceeEEEEEchhhhhhHHhhccccceeeeEeCCC
Confidence            111 110  0123344333332233221                 012367788887655443 3344567789999999


Q ss_pred             CCEEEEEEcCCCeEEEEEeecCCCcceEEeccCCCCCCCceEECCCCCEEEEEec
Q 026118          163 ERFLVVCESWKFRCVKHFLKVSGRTDREIFIDNLPGGPDNVNLARDGSFWISIIK  217 (243)
Q Consensus       163 g~~l~v~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~i~~d~~G~lwv~~~~  217 (243)
                      |+||..+. .++.|..||+-...+-..-.+    +.-+-.+.++++|.+......
T Consensus       588 grWlisas-mD~tIr~wDlpt~~lID~~~v----d~~~~sls~SPngD~LAT~Hv  637 (910)
T KOG1539|consen  588 GRWLISAS-MDSTIRTWDLPTGTLIDGLLV----DSPCTSLSFSPNGDFLATVHV  637 (910)
T ss_pred             CcEEEEee-cCCcEEEEeccCcceeeeEec----CCcceeeEECCCCCEEEEEEe
Confidence            99888885 468899999754322111111    112344666666665444433

>COG3490 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=97.35  E-value=0.017  Score=45.78  Aligned_cols=124  Identities=10%  Similarity=0.089  Sum_probs=64.8

Q ss_pred             CccccceEEccCCCEEEEEeCC------C------------cEEEEe-cCC-cEEEEeccCCCcccCCccEEEcCCCcEE
Q 026118           49 SQSLLGLTTTKENNVIIVCDSQ------Q------------GLLKVS-EEG-VTVLVSQFNGSQLRFANDVIEASDGSLY  108 (243)
Q Consensus        49 ~~~~~~i~~~~~g~l~~v~~~~------~------------gl~~~~-~~g-~~~~~~~~~~~~~~~~~~l~~d~~G~l~  108 (243)
                      ..|. .+.+.+||+++.+++.+      .            .+..++ .+| ......-+......++..|++++||++|
T Consensus       162 iGpH-ev~lm~DGrtlvvanGGIethpdfgR~~lNldsMePSlvlld~atG~liekh~Lp~~l~~lSiRHld~g~dgtvw  240 (366)
T COG3490         162 IGPH-EVTLMADGRTLVVANGGIETHPDFGRTELNLDSMEPSLVLLDAATGNLIEKHTLPASLRQLSIRHLDIGRDGTVW  240 (366)
T ss_pred             cCcc-eeEEecCCcEEEEeCCceecccccCccccchhhcCccEEEEeccccchhhhccCchhhhhcceeeeeeCCCCcEE
Confidence            3456 67888999986676531      1            144444 444 2111111222234577889999999999


Q ss_pred             EEeCCCCCCcccccccccccCCCceEEEEeCCCCeeEEee--cc-----ccccceEEEcCCCCEEEEEEcCCCeEEEEEe
Q 026118          109 FTVSSTKFTPAEYYLDLVSGEPHGVLLKYDPSTNQTSLVL--DG-----LYFANGVALSEDERFLVVCESWKFRCVKHFL  181 (243)
Q Consensus       109 v~~~~~~~~~~~~~~~~~~~~~~g~v~~~~~~~~~~~~~~--~~-----~~~~~gi~~~~dg~~l~v~~~~~~~i~~~~~  181 (243)
                      ++..-.+  +.         ....-|.-.-..++.++.+.  +.     ..+.-+|+.+.+..++-++....+....+|.
T Consensus       241 fgcQy~G--~~---------~d~ppLvg~~~~g~~l~~~~~pee~~~~~anYigsiA~n~~~glV~lTSP~GN~~vi~da  309 (366)
T COG3490         241 FGCQYRG--PR---------NDLPPLVGHFRKGEPLEFLDLPEEQTAAFANYIGSIAANRRDGLVALTSPRGNRAVIWDA  309 (366)
T ss_pred             EEEEeeC--CC---------ccCCcceeeccCCCcCcccCCCHHHHHHHHhhhhheeecccCCeEEEecCCCCeEEEEEc
Confidence            9853210  00         00011222222223333321  11     1233467877666656667667778888887


Q ss_pred             ecC
Q 026118          182 KVS  184 (243)
Q Consensus       182 ~~~  184 (243)
                      +.+
T Consensus       310 ~tG  312 (366)
T COG3490         310 ATG  312 (366)
T ss_pred             CCC
Confidence            654

>PRK01029 tolB translocation protein TolB; Provisional

Probab=97.35  E-value=0.031  Score=47.90  Aligned_cols=48  Identities=6%  Similarity=-0.146  Sum_probs=33.3

Q ss_pred             CceEEEEeCCCCeeEEeeccccccceEEEcCCCCEEEEEEcC--CCeEEE
Q 026118          131 HGVLLKYDPSTNQTSLVLDGLYFANGVALSEDERFLVVCESW--KFRCVK  178 (243)
Q Consensus       131 ~g~v~~~~~~~~~~~~~~~~~~~~~gi~~~~dg~~l~v~~~~--~~~i~~  178 (243)
                      ...||.++.++++.+++..........+|+|||+.|.++...  ...++.
T Consensus       210 ~~~I~~~~l~~g~~~~lt~~~g~~~~p~wSPDG~~Laf~s~~~g~~di~~  259 (428)
T PRK01029        210 VPKIFLGSLENPAGKKILALQGNQLMPTFSPRKKLLAFISDRYGNPDLFI  259 (428)
T ss_pred             CceEEEEECCCCCceEeecCCCCccceEECCCCCEEEEEECCCCCcceeE
Confidence            357999999988877775433444567999999888776532  234555

>KOG0639 consensus Transducin-like enhancer of split protein (contains WD40 repeats) [Chromatin structure and dynamics]

Probab=97.33  E-value=0.0032  Score=53.15  Aligned_cols=170  Identities=11%  Similarity=0.029  Sum_probs=96.3

Q ss_pred             EcCCCc-EEEEeCCCcEEEEcc---CCceeEecc-cCCccccceEEccCCCEEEEEeCCCcEEEEe-cCC--cEEEEecc
Q 026118           17 VDGNGV-LYTATGDGWIKRMHP---NGTWEDWHQ-VGSQSLLGLTTTKENNVIIVCDSQQGLLKVS-EEG--VTVLVSQF   88 (243)
Q Consensus        17 ~d~~g~-l~~~~~~~~i~~~~~---~g~~~~~~~-~~~~~~~~i~~~~~g~l~~v~~~~~gl~~~~-~~g--~~~~~~~~   88 (243)
                      ..+||+ |.++.....+..+|.   +-+++.-.. ...... .++.++|-++.|.+-.++.|..+| .+.  ++.+....
T Consensus       473 L~pdgrtLivGGeastlsiWDLAapTprikaeltssapaCy-ALa~spDakvcFsccsdGnI~vwDLhnq~~VrqfqGht  551 (705)
T KOG0639|consen  473 LLPDGRTLIVGGEASTLSIWDLAAPTPRIKAELTSSAPACY-ALAISPDAKVCFSCCSDGNIAVWDLHNQTLVRQFQGHT  551 (705)
T ss_pred             ecCCCceEEeccccceeeeeeccCCCcchhhhcCCcchhhh-hhhcCCccceeeeeccCCcEEEEEcccceeeecccCCC
Confidence            346664 556655556677772   222221111 011234 678889999877776666788888 665  33332222


Q ss_pred             CCCcccCCccEEEcCCCc-EEEEeCCCCCCcccccccccccCCCceEEEEeCCCCeeEEee-cc-ccccceEEEcCCCCE
Q 026118           89 NGSQLRFANDVIEASDGS-LYFTVSSTKFTPAEYYLDLVSGEPHGVLLKYDPSTNQTSLVL-DG-LYFANGVALSEDERF  165 (243)
Q Consensus        89 ~~~~~~~~~~l~~d~~G~-l~v~~~~~~~~~~~~~~~~~~~~~~g~v~~~~~~~~~~~~~~-~~-~~~~~gi~~~~dg~~  165 (243)
                           ....+|.+.+||. ||-+.                  ..+.|-+.|...++  .+. .+ .....++-..|.+.|
T Consensus       552 -----DGascIdis~dGtklWTGG------------------lDntvRcWDlregr--qlqqhdF~SQIfSLg~cP~~dW  606 (705)
T KOG0639|consen  552 -----DGASCIDISKDGTKLWTGG------------------LDNTVRCWDLREGR--QLQQHDFSSQIFSLGYCPTGDW  606 (705)
T ss_pred             -----CCceeEEecCCCceeecCC------------------Cccceeehhhhhhh--hhhhhhhhhhheecccCCCccc
Confidence                 3456888889995 88762                  34577788876442  222 11 123445667799998


Q ss_pred             EEEEEcCCCeEEEEEeecCCCcceEEeccCCCCCCCceEECCCCCEEEEEec
Q 026118          166 LVVCESWKFRCVKHFLKVSGRTDREIFIDNLPGGPDNVNLARDGSFWISIIK  217 (243)
Q Consensus       166 l~v~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~i~~d~~G~lwv~~~~  217 (243)
                      |.|. +.++.++.....+.  .+++. . ....-.-.+.+..-|..||++..
T Consensus       607 lavG-Mens~vevlh~skp--~kyql-h-lheScVLSlKFa~cGkwfvStGk  653 (705)
T KOG0639|consen  607 LAVG-MENSNVEVLHTSKP--EKYQL-H-LHESCVLSLKFAYCGKWFVSTGK  653 (705)
T ss_pred             eeee-cccCcEEEEecCCc--cceee-c-ccccEEEEEEecccCceeeecCc
Confidence            8877 66777888776542  11111 0 00001123666777777777643

>KOG0283 consensus WD40 repeat-containing protein [Function unknown]

Probab=97.30  E-value=0.0092  Score=52.99  Aligned_cols=148  Identities=11%  Similarity=0.112  Sum_probs=89.2

Q ss_pred             cEEEcC-CCcEEEEe-CCCcEEEEc-cCCceeEecccCCccccceEEccCCCEEEEEeCCCcEEEEe-cCCcE-E----E
Q 026118           14 DVSVDG-NGVLYTAT-GDGWIKRMH-PNGTWEDWHQVGSQSLLGLTTTKENNVIIVCDSQQGLLKVS-EEGVT-V----L   84 (243)
Q Consensus        14 ~i~~d~-~g~l~~~~-~~~~i~~~~-~~g~~~~~~~~~~~~~~~i~~~~~g~l~~v~~~~~gl~~~~-~~g~~-~----~   84 (243)
                      ||+|.| |.+.+++. -|++|..|+ ++.++..|........ .+.+.|||+...|++. .|.+++- ..+.+ +    +
T Consensus       414 cVaFnPvDDryFiSGSLD~KvRiWsI~d~~Vv~W~Dl~~lIT-Avcy~PdGk~avIGt~-~G~C~fY~t~~lk~~~~~~I  491 (712)
T KOG0283|consen  414 CVAFNPVDDRYFISGSLDGKVRLWSISDKKVVDWNDLRDLIT-AVCYSPDGKGAVIGTF-NGYCRFYDTEGLKLVSDFHI  491 (712)
T ss_pred             EEEecccCCCcEeecccccceEEeecCcCeeEeehhhhhhhe-eEEeccCCceEEEEEe-ccEEEEEEccCCeEEEeeeE
Confidence            578887 55666554 789999999 7888888765433334 8899999998677775 5666554 44411 1    1


Q ss_pred             Eecc-CCCcccCCccEEEcCC--CcEEEEeCCCCCCcccccccccccCCCceEEEEeCCCCeeEEeecc---ccccceEE
Q 026118           85 VSQF-NGSQLRFANDVIEASD--GSLYFTVSSTKFTPAEYYLDLVSGEPHGVLLKYDPSTNQTSLVLDG---LYFANGVA  158 (243)
Q Consensus        85 ~~~~-~~~~~~~~~~l~~d~~--G~l~v~~~~~~~~~~~~~~~~~~~~~~g~v~~~~~~~~~~~~~~~~---~~~~~gi~  158 (243)
                      .... .......+.|+.+.|.  .++.|+...                  .+|-.||.....+..-..+   ........
T Consensus       492 ~~~~~Kk~~~~rITG~Q~~p~~~~~vLVTSnD------------------SrIRI~d~~~~~lv~KfKG~~n~~SQ~~As  553 (712)
T KOG0283|consen  492 RLHNKKKKQGKRITGLQFFPGDPDEVLVTSND------------------SRIRIYDGRDKDLVHKFKGFRNTSSQISAS  553 (712)
T ss_pred             eeccCccccCceeeeeEecCCCCCeEEEecCC------------------CceEEEeccchhhhhhhcccccCCcceeee
Confidence            1110 0111123556655542  258887533                  4677777643332221222   12234567


Q ss_pred             EcCCCCEEEEEEcCCCeEEEEEee
Q 026118          159 LSEDERFLVVCESWKFRCVKHFLK  182 (243)
Q Consensus       159 ~~~dg~~l~v~~~~~~~i~~~~~~  182 (243)
                      |+.||+++..+. .+..||.++.+
T Consensus       554 fs~Dgk~IVs~s-eDs~VYiW~~~  576 (712)
T KOG0283|consen  554 FSSDGKHIVSAS-EDSWVYIWKND  576 (712)
T ss_pred             EccCCCEEEEee-cCceEEEEeCC
Confidence            888999887775 67899999874

>PTZ00421 coronin; Provisional

Probab=97.26  E-value=0.11  Score=45.31  Aligned_cols=155  Identities=13%  Similarity=0.050  Sum_probs=84.8

Q ss_pred             cccEEEcCCC-c-EEEEeCCCcEEEEc-cCCcee-EecccCCccccceEEccCCCEEEEEeCCCcEEEEe-cCC-c-EEE
Q 026118           12 PEDVSVDGNG-V-LYTATGDGWIKRMH-PNGTWE-DWHQVGSQSLLGLTTTKENNVIIVCDSQQGLLKVS-EEG-V-TVL   84 (243)
Q Consensus        12 p~~i~~d~~g-~-l~~~~~~~~i~~~~-~~g~~~-~~~~~~~~~~~~i~~~~~g~l~~v~~~~~gl~~~~-~~g-~-~~~   84 (243)
                      ..++++.+++ . |..+..++.|..+| ..++.. .+........ +++++++|++|..+..++.|..+| .++ . ..+
T Consensus       128 V~~l~f~P~~~~iLaSgs~DgtVrIWDl~tg~~~~~l~~h~~~V~-sla~spdG~lLatgs~Dg~IrIwD~rsg~~v~tl  206 (493)
T PTZ00421        128 VGIVSFHPSAMNVLASAGADMVVNVWDVERGKAVEVIKCHSDQIT-SLEWNLDGSLLCTTSKDKKLNIIDPRDGTIVSSV  206 (493)
T ss_pred             EEEEEeCcCCCCEEEEEeCCCEEEEEECCCCeEEEEEcCCCCceE-EEEEECCCCEEEEecCCCEEEEEECCCCcEEEEE
Confidence            4467888754 3 55556788899998 344432 2221112234 889999999855555444566777 555 2 222


Q ss_pred             EeccCCCcccCCccEEEcCCCcEEEEeCCCCCCcccccccccccCCCceEEEEeCCCCeeE-Eee--ccccccceEEEcC
Q 026118           85 VSQFNGSQLRFANDVIEASDGSLYFTVSSTKFTPAEYYLDLVSGEPHGVLLKYDPSTNQTS-LVL--DGLYFANGVALSE  161 (243)
Q Consensus        85 ~~~~~~~~~~~~~~l~~d~~G~l~v~~~~~~~~~~~~~~~~~~~~~~g~v~~~~~~~~~~~-~~~--~~~~~~~gi~~~~  161 (243)
                      ... .   ......+.+.+++..+++...             .....+.|..+|..+.... ...  ..........+++
T Consensus       207 ~~H-~---~~~~~~~~w~~~~~~ivt~G~-------------s~s~Dr~VklWDlr~~~~p~~~~~~d~~~~~~~~~~d~  269 (493)
T PTZ00421        207 EAH-A---SAKSQRCLWAKRKDLIITLGC-------------SKSQQRQIMLWDTRKMASPYSTVDLDQSSALFIPFFDE  269 (493)
T ss_pred             ecC-C---CCcceEEEEcCCCCeEEEEec-------------CCCCCCeEEEEeCCCCCCceeEeccCCCCceEEEEEcC
Confidence            111 1   111223455666665555311             0012345777776533211 111  1111222356889


Q ss_pred             CCCEEEEEEcCCCeEEEEEeecC
Q 026118          162 DERFLVVCESWKFRCVKHFLKVS  184 (243)
Q Consensus       162 dg~~l~v~~~~~~~i~~~~~~~~  184 (243)
                      +++.||++...++.|..|++..+
T Consensus       270 d~~~L~lggkgDg~Iriwdl~~~  292 (493)
T PTZ00421        270 DTNLLYIGSKGEGNIRCFELMNE  292 (493)
T ss_pred             CCCEEEEEEeCCCeEEEEEeeCC
Confidence            99988887666788999998764

>KOG0293 consensus WD40 repeat-containing protein [Function unknown]

Probab=97.26  E-value=0.034  Score=46.04  Aligned_cols=150  Identities=10%  Similarity=0.048  Sum_probs=86.4

Q ss_pred             ccEEEcCCCcEEEEe-CCCcEEEEcc-CCc-eeEecccCCccccceEEccCCCEEEEEeCCCcEEEEecCC-cEEEEecc
Q 026118           13 EDVSVDGNGVLYTAT-GDGWIKRMHP-NGT-WEDWHQVGSQSLLGLTTTKENNVIIVCDSQQGLLKVSEEG-VTVLVSQF   88 (243)
Q Consensus        13 ~~i~~d~~g~l~~~~-~~~~i~~~~~-~g~-~~~~~~~~~~~~~~i~~~~~g~l~~v~~~~~gl~~~~~~g-~~~~~~~~   88 (243)
                      ..|.+.||.+-.++. .+.-+..+|. .|. ...+....+....+.+-.|||..+.++..+.+++.++.+| ..   ...
T Consensus       273 ~yi~wSPDdryLlaCg~~e~~~lwDv~tgd~~~~y~~~~~~S~~sc~W~pDg~~~V~Gs~dr~i~~wdlDgn~~---~~W  349 (519)
T KOG0293|consen  273 SYIMWSPDDRYLLACGFDEVLSLWDVDTGDLRHLYPSGLGFSVSSCAWCPDGFRFVTGSPDRTIIMWDLDGNIL---GNW  349 (519)
T ss_pred             EEEEECCCCCeEEecCchHheeeccCCcchhhhhcccCcCCCcceeEEccCCceeEecCCCCcEEEecCCcchh---hcc
Confidence            346677766544433 4455667772 332 2223322223333677789998734444456788888555 21   112


Q ss_pred             CCCcccCCccEEEcCCCcEEEEeCCCCCCcccccccccccCCCceEEEEeCCCCeeEEeeccccccceEEEcCCCCEEEE
Q 026118           89 NGSQLRFANDVIEASDGSLYFTVSSTKFTPAEYYLDLVSGEPHGVLLKYDPSTNQTSLVLDGLYFANGVALSEDERFLVV  168 (243)
Q Consensus        89 ~~~~~~~~~~l~~d~~G~l~v~~~~~~~~~~~~~~~~~~~~~~g~v~~~~~~~~~~~~~~~~~~~~~gi~~~~dg~~l~v  168 (243)
                      .+.....+.+|++.+||...++..                 ....+..|+..+..-+.+........++.++.|++ +..
T Consensus       350 ~gvr~~~v~dlait~Dgk~vl~v~-----------------~d~~i~l~~~e~~~dr~lise~~~its~~iS~d~k-~~L  411 (519)
T KOG0293|consen  350 EGVRDPKVHDLAITYDGKYVLLVT-----------------VDKKIRLYNREARVDRGLISEEQPITSFSISKDGK-LAL  411 (519)
T ss_pred             cccccceeEEEEEcCCCcEEEEEe-----------------cccceeeechhhhhhhccccccCceeEEEEcCCCc-EEE
Confidence            333334577899999997443311                 12245556665332222333344557789999999 555


Q ss_pred             EEcCCCeEEEEEeec
Q 026118          169 CESWKFRCVKHFLKV  183 (243)
Q Consensus       169 ~~~~~~~i~~~~~~~  183 (243)
                      .+-..+.+..+|+..
T Consensus       412 vnL~~qei~LWDl~e  426 (519)
T KOG0293|consen  412 VNLQDQEIHLWDLEE  426 (519)
T ss_pred             EEcccCeeEEeecch
Confidence            666788999999874

>PTZ00420 coronin; Provisional

Probab=97.24  E-value=0.13  Score=45.63  Aligned_cols=157  Identities=6%  Similarity=-0.016  Sum_probs=78.9

Q ss_pred             cccEEEcCCCc-EE-EEeCCCcEEEEcc-CCcee-EecccCCccccceEEccCCCEEEEEeCCCcEEEEe-cCC-c-EEE
Q 026118           12 PEDVSVDGNGV-LY-TATGDGWIKRMHP-NGTWE-DWHQVGSQSLLGLTTTKENNVIIVCDSQQGLLKVS-EEG-V-TVL   84 (243)
Q Consensus        12 p~~i~~d~~g~-l~-~~~~~~~i~~~~~-~g~~~-~~~~~~~~~~~~i~~~~~g~l~~v~~~~~gl~~~~-~~g-~-~~~   84 (243)
                      -.++++.+++. +. .+..++.|..+|. .++.. .+. ...... ++.++++|.+|.++..++.+..+| .++ . ..+
T Consensus       128 V~sVaf~P~g~~iLaSgS~DgtIrIWDl~tg~~~~~i~-~~~~V~-SlswspdG~lLat~s~D~~IrIwD~Rsg~~i~tl  205 (568)
T PTZ00420        128 ISIIDWNPMNYYIMCSSGFDSFVNIWDIENEKRAFQIN-MPKKLS-SLKWNIKGNLLSGTCVGKHMHIIDPRKQEIASSF  205 (568)
T ss_pred             EEEEEECCCCCeEEEEEeCCCeEEEEECCCCcEEEEEe-cCCcEE-EEEECCCCCEEEEEecCCEEEEEECCCCcEEEEE
Confidence            45688888775 43 3457888999983 44422 222 122334 889999999843333344577777 555 2 222


Q ss_pred             EeccCCCc-ccCCccEEEcCCCcEEEEeCCCCCCcccccccccccCCCceEEEEeCCC-CeeEEeeccccccce--EEEc
Q 026118           85 VSQFNGSQ-LRFANDVIEASDGSLYFTVSSTKFTPAEYYLDLVSGEPHGVLLKYDPST-NQTSLVLDGLYFANG--VALS  160 (243)
Q Consensus        85 ~~~~~~~~-~~~~~~l~~d~~G~l~v~~~~~~~~~~~~~~~~~~~~~~g~v~~~~~~~-~~~~~~~~~~~~~~g--i~~~  160 (243)
                      .. ..+.. ........+.+++..+++....             ......|..+|..+ .+..........+..  ..++
T Consensus       206 ~g-H~g~~~s~~v~~~~fs~d~~~IlTtG~d-------------~~~~R~VkLWDlr~~~~pl~~~~ld~~~~~L~p~~D  271 (568)
T PTZ00420        206 HI-HDGGKNTKNIWIDGLGGDDNYILSTGFS-------------KNNMREMKLWDLKNTTSALVTMSIDNASAPLIPHYD  271 (568)
T ss_pred             ec-ccCCceeEEEEeeeEcCCCCEEEEEEcC-------------CCCccEEEEEECCCCCCceEEEEecCCccceEEeee
Confidence            11 11110 0001111223677766664220             00112466666652 222221111111111  2344


Q ss_pred             CCCCEEEEEEcCCCeEEEEEeecC
Q 026118          161 EDERFLVVCESWKFRCVKHFLKVS  184 (243)
Q Consensus       161 ~dg~~l~v~~~~~~~i~~~~~~~~  184 (243)
                      ++...+|++..+++.|..|++..+
T Consensus       272 ~~tg~l~lsGkGD~tIr~~e~~~~  295 (568)
T PTZ00420        272 ESTGLIYLIGKGDGNCRYYQHSLG  295 (568)
T ss_pred             CCCCCEEEEEECCCeEEEEEccCC
Confidence            543348888778899999988654

>KOG0271 consensus Notchless-like WD40 repeat-containing protein [Function unknown]

Probab=97.21  E-value=0.027  Score=46.19  Aligned_cols=98  Identities=23%  Similarity=0.186  Sum_probs=62.5

Q ss_pred             cCCccEEEcCCCcEEEEeCCCCCCcccccccccccCCCceEEEEeCCCCeeEEeec-cccccceEEEcCCCCEEEEEEcC
Q 026118           94 RFANDVIEASDGSLYFTVSSTKFTPAEYYLDLVSGEPHGVLLKYDPSTNQTSLVLD-GLYFANGVALSEDERFLVVCESW  172 (243)
Q Consensus        94 ~~~~~l~~d~~G~l~v~~~~~~~~~~~~~~~~~~~~~~g~v~~~~~~~~~~~~~~~-~~~~~~gi~~~~dg~~l~v~~~~  172 (243)
                      ..++.+.++|||++..+-+-                 ...|-..+..+|+...... .......++++.|.+ |.|+...
T Consensus       368 ~lVn~V~fSPd~r~IASaSF-----------------DkSVkLW~g~tGk~lasfRGHv~~VYqvawsaDsR-LlVS~Sk  429 (480)
T KOG0271|consen  368 ALVNHVSFSPDGRYIASASF-----------------DKSVKLWDGRTGKFLASFRGHVAAVYQVAWSADSR-LLVSGSK  429 (480)
T ss_pred             hheeeEEECCCccEEEEeec-----------------ccceeeeeCCCcchhhhhhhccceeEEEEeccCcc-EEEEcCC
Confidence            46788999999976665321                 1234445666676543332 345567899999999 8888888


Q ss_pred             CCeEEEEEeecCCCcceEEeccCCCCCCCc---eEECCCCCEEEEE
Q 026118          173 KFRCVKHFLKVSGRTDREIFIDNLPGGPDN---VNLARDGSFWISI  215 (243)
Q Consensus       173 ~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~---i~~d~~G~lwv~~  215 (243)
                      +..|-.+++...++      ...++|.-+.   +...+||...++.
T Consensus       430 DsTLKvw~V~tkKl------~~DLpGh~DEVf~vDwspDG~rV~sg  469 (480)
T KOG0271|consen  430 DSTLKVWDVRTKKL------KQDLPGHADEVFAVDWSPDGQRVASG  469 (480)
T ss_pred             CceEEEEEeeeeee------cccCCCCCceEEEEEecCCCceeecC
Confidence            88888888765322      2234444333   4445788766654

>KOG2106 consensus Uncharacterized conserved protein, contains HELP and WD40 domains [Function unknown]

Probab=97.17  E-value=0.05  Score=46.23  Aligned_cols=144  Identities=13%  Similarity=0.028  Sum_probs=79.8

Q ss_pred             cccEEEcCCCcEEEEeCCCcEEEEccCCceeEe--cccCCccccceEEccCCCEEEEEeCCCcEEEEecCCcEEEEe--c
Q 026118           12 PEDVSVDGNGVLYTATGDGWIKRMHPNGTWEDW--HQVGSQSLLGLTTTKENNVIIVCDSQQGLLKVSEEGVTVLVS--Q   87 (243)
Q Consensus        12 p~~i~~d~~g~l~~~~~~~~i~~~~~~g~~~~~--~~~~~~~~~~i~~~~~g~l~~v~~~~~gl~~~~~~g~~~~~~--~   87 (243)
                      -.++++.++|.+..++.+|.|..+++.+.....  ....+... ++..-.+|.+ ..+..+..|..++. ..+.+..  .
T Consensus       249 Vl~v~F~engdviTgDS~G~i~Iw~~~~~~~~k~~~aH~ggv~-~L~~lr~Gtl-lSGgKDRki~~Wd~-~y~k~r~~el  325 (626)
T KOG2106|consen  249 VLCVTFLENGDVITGDSGGNILIWSKGTNRISKQVHAHDGGVF-SLCMLRDGTL-LSGGKDRKIILWDD-NYRKLRETEL  325 (626)
T ss_pred             EEEEEEcCCCCEEeecCCceEEEEeCCCceEEeEeeecCCceE-EEEEecCccE-eecCccceEEeccc-cccccccccC
Confidence            457888899999999988999999865432211  12223334 6777788988 44443345677762 1222211  1


Q ss_pred             cCCCcccCCccEEEcCCCcEEEEeCCCCCCcccccccccccCCCceEEEEeCCCCeeEEeeccccccceEEEcCCCCEEE
Q 026118           88 FNGSQLRFANDVIEASDGSLYFTVSSTKFTPAEYYLDLVSGEPHGVLLKYDPSTNQTSLVLDGLYFANGVALSEDERFLV  167 (243)
Q Consensus        88 ~~~~~~~~~~~l~~d~~G~l~v~~~~~~~~~~~~~~~~~~~~~~g~v~~~~~~~~~~~~~~~~~~~~~gi~~~~dg~~l~  167 (243)
                      ++  ....+.-++.. .+.++++++.                  +.|+.=+.+++-...+......-=|++.+|..+ +|
T Consensus       326 Pe--~~G~iRtv~e~-~~di~vGTtr------------------N~iL~Gt~~~~f~~~v~gh~delwgla~hps~~-q~  383 (626)
T KOG2106|consen  326 PE--QFGPIRTVAEG-KGDILVGTTR------------------NFILQGTLENGFTLTVQGHGDELWGLATHPSKN-QL  383 (626)
T ss_pred             ch--hcCCeeEEecC-CCcEEEeecc------------------ceEEEeeecCCceEEEEecccceeeEEcCCChh-he
Confidence            11  12234344433 3459998754                  456655544332222222122334788888777 66


Q ss_pred             EEEcCCCeEEEEE
Q 026118          168 VCESWKFRCVKHF  180 (243)
Q Consensus       168 v~~~~~~~i~~~~  180 (243)
                      ++...+..+..++
T Consensus       384 ~T~gqdk~v~lW~  396 (626)
T KOG2106|consen  384 LTCGQDKHVRLWN  396 (626)
T ss_pred             eeccCcceEEEcc
Confidence            6655566666666

>KOG1407 consensus WD40 repeat protein [Function unknown]

Probab=97.16  E-value=0.077  Score=41.47  Aligned_cols=146  Identities=11%  Similarity=0.094  Sum_probs=80.1

Q ss_pred             CcccEEEcCCC-cEEEE-eCCCcEEEEc-cCCc-eeEecccCCccccceEEccCCCEEEEEeCCCcEEEEe-cCCcEEEE
Q 026118           11 HPEDVSVDGNG-VLYTA-TGDGWIKRMH-PNGT-WEDWHQVGSQSLLGLTTTKENNVIIVCDSQQGLLKVS-EEGVTVLV   85 (243)
Q Consensus        11 ~p~~i~~d~~g-~l~~~-~~~~~i~~~~-~~g~-~~~~~~~~~~~~~~i~~~~~g~l~~v~~~~~gl~~~~-~~g~~~~~   85 (243)
                      .-+.++.++.. .++++ ..+..|.+++ ..++ ....... ..-. .+...|+|....+++...-|..+| .+- +...
T Consensus        66 svdql~w~~~~~d~~atas~dk~ir~wd~r~~k~~~~i~~~-~eni-~i~wsp~g~~~~~~~kdD~it~id~r~~-~~~~  142 (313)
T KOG1407|consen   66 SVDQLCWDPKHPDLFATASGDKTIRIWDIRSGKCTARIETK-GENI-NITWSPDGEYIAVGNKDDRITFIDARTY-KIVN  142 (313)
T ss_pred             chhhheeCCCCCcceEEecCCceEEEEEeccCcEEEEeecc-Ccce-EEEEcCCCCEEEEecCcccEEEEEeccc-ceee
Confidence            45667888633 45544 4677788888 3333 2222221 1223 577889998845555556677777 332 1111


Q ss_pred             eccCCCcccCCccEEEcCCCcEEEEeCCCCCCcccccccccccCCCceEEEEeCCCCeeEEeeccccc---cceEEEcCC
Q 026118           86 SQFNGSQLRFANDVIEASDGSLYFTVSSTKFTPAEYYLDLVSGEPHGVLLKYDPSTNQTSLVLDGLYF---ANGVALSED  162 (243)
Q Consensus        86 ~~~~~~~~~~~~~l~~d~~G~l~v~~~~~~~~~~~~~~~~~~~~~~g~v~~~~~~~~~~~~~~~~~~~---~~gi~~~~d  162 (243)
                      . .+ . .-..+.+...-++++||.+.+                 .|.|-.+.-.  +++++..-..+   .-.|.|+|+
T Consensus       143 ~-~~-~-~~e~ne~~w~~~nd~Fflt~G-----------------lG~v~ILsyp--sLkpv~si~AH~snCicI~f~p~  200 (313)
T KOG1407|consen  143 E-EQ-F-KFEVNEISWNNSNDLFFLTNG-----------------LGCVEILSYP--SLKPVQSIKAHPSNCICIEFDPD  200 (313)
T ss_pred             h-hc-c-cceeeeeeecCCCCEEEEecC-----------------CceEEEEecc--ccccccccccCCcceEEEEECCC
Confidence            1 11 0 123445566667888887654                 2344333322  34444322222   335899999


Q ss_pred             CCEEEEEEcCCCeEEEEEee
Q 026118          163 ERFLVVCESWKFRCVKHFLK  182 (243)
Q Consensus       163 g~~l~v~~~~~~~i~~~~~~  182 (243)
                      |+++-+.. .+..+..+|++
T Consensus       201 GryfA~Gs-ADAlvSLWD~~  219 (313)
T KOG1407|consen  201 GRYFATGS-ADALVSLWDVD  219 (313)
T ss_pred             CceEeecc-ccceeeccChh
Confidence            99777664 45666667765

>COG0823 TolB Periplasmic component of the Tol biopolymer transport system [Intracellular trafficking and secretion]

Probab=97.16  E-value=0.064  Score=45.83  Aligned_cols=109  Identities=16%  Similarity=0.046  Sum_probs=64.8

Q ss_pred             ceEEccCCCEEEEEeCCC---cEEEEe-cCC-cEEEEeccCCCcccCCccEEEcCCCc-EEEEeCCCCCCcccccccccc
Q 026118           54 GLTTTKENNVIIVCDSQQ---GLLKVS-EEG-VTVLVSQFNGSQLRFANDVIEASDGS-LYFTVSSTKFTPAEYYLDLVS  127 (243)
Q Consensus        54 ~i~~~~~g~l~~v~~~~~---gl~~~~-~~g-~~~~~~~~~~~~~~~~~~l~~d~~G~-l~v~~~~~~~~~~~~~~~~~~  127 (243)
                      ...++|||+.+.++....   .|+.+| ..+ ...+-. ..+. ...|   .+.|||+ ++++.+.              
T Consensus       242 ~P~fspDG~~l~f~~~rdg~~~iy~~dl~~~~~~~Lt~-~~gi-~~~P---s~spdG~~ivf~Sdr--------------  302 (425)
T COG0823         242 APAFSPDGSKLAFSSSRDGSPDIYLMDLDGKNLPRLTN-GFGI-NTSP---SWSPDGSKIVFTSDR--------------  302 (425)
T ss_pred             CccCCCCCCEEEEEECCCCCccEEEEcCCCCcceeccc-CCcc-ccCc---cCCCCCCEEEEEeCC--------------
Confidence            567889998755554433   488888 444 332221 1111 1122   5678987 4444332              


Q ss_pred             cCCCceEEEEeCCCCeeEEeeccccccceEEEcCCCCEEEEEEcCCCe--EEEEEee
Q 026118          128 GEPHGVLLKYDPSTNQTSLVLDGLYFANGVALSEDERFLVVCESWKFR--CVKHFLK  182 (243)
Q Consensus       128 ~~~~g~v~~~~~~~~~~~~~~~~~~~~~gi~~~~dg~~l~v~~~~~~~--i~~~~~~  182 (243)
                       ...-.||+++++++..+++........-..++|||+++.+.....+.  |..+++.
T Consensus       303 -~G~p~I~~~~~~g~~~~riT~~~~~~~~p~~SpdG~~i~~~~~~~g~~~i~~~~~~  358 (425)
T COG0823         303 -GGRPQIYLYDLEGSQVTRLTFSGGGNSNPVWSPDGDKIVFESSSGGQWDIDKNDLA  358 (425)
T ss_pred             -CCCcceEEECCCCCceeEeeccCCCCcCccCCCCCCEEEEEeccCCceeeEEeccC
Confidence             12237999999988887776544444456889999988777643333  5555543

>TIGR03300 assembly_YfgL outer membrane assembly lipoprotein YfgL

Probab=97.15  E-value=0.033  Score=46.76  Aligned_cols=131  Identities=17%  Similarity=0.195  Sum_probs=73.8

Q ss_pred             CCcEEEEeCCCcEEEEc-cCCceeEecccCCccccceEEccCCCEEEEEeCCCcEEEEe-cCCcEEEEe-ccCCCcccCC
Q 026118           20 NGVLYTATGDGWIKRMH-PNGTWEDWHQVGSQSLLGLTTTKENNVIIVCDSQQGLLKVS-EEGVTVLVS-QFNGSQLRFA   96 (243)
Q Consensus        20 ~g~l~~~~~~~~i~~~~-~~g~~~~~~~~~~~~~~~i~~~~~g~l~~v~~~~~gl~~~~-~~g~~~~~~-~~~~~~~~~~   96 (243)
                      ++.+|++..++.++.++ .+|+.. |........ .++++ ++++ |+++..+.++.++ .+|...... .........|
T Consensus       241 ~~~vy~~~~~g~l~a~d~~tG~~~-W~~~~~~~~-~p~~~-~~~v-yv~~~~G~l~~~d~~tG~~~W~~~~~~~~~~ssp  316 (377)
T TIGR03300       241 GGQVYAVSYQGRVAALDLRSGRVL-WKRDASSYQ-GPAVD-DNRL-YVTDADGVVVALDRRSGSELWKNDELKYRQLTAP  316 (377)
T ss_pred             CCEEEEEEcCCEEEEEECCCCcEE-EeeccCCcc-CceEe-CCEE-EEECCCCeEEEEECCCCcEEEccccccCCccccC
Confidence            56889888888999999 466543 322212222 34442 3455 8888666799999 677222211 1111111122


Q ss_pred             ccEEEcCCCcEEEEeCCCCCCcccccccccccCCCceEEEEeCCCCeeEEeec--cccccceEEEcCCCCEEEEEEcCCC
Q 026118           97 NDVIEASDGSLYFTVSSTKFTPAEYYLDLVSGEPHGVLLKYDPSTNQTSLVLD--GLYFANGVALSEDERFLVVCESWKF  174 (243)
Q Consensus        97 ~~l~~d~~G~l~v~~~~~~~~~~~~~~~~~~~~~~g~v~~~~~~~~~~~~~~~--~~~~~~gi~~~~dg~~l~v~~~~~~  174 (243)
                         ++ .++.+|+++.                  .+.|+.+|+++|+...-..  ........++. +++ ||+... ++
T Consensus       317 ---~i-~g~~l~~~~~------------------~G~l~~~d~~tG~~~~~~~~~~~~~~~sp~~~-~~~-l~v~~~-dG  371 (377)
T TIGR03300       317 ---AV-VGGYLVVGDF------------------EGYLHWLSREDGSFVARLKTDGSGIASPPVVV-GDG-LLVQTR-DG  371 (377)
T ss_pred             ---EE-ECCEEEEEeC------------------CCEEEEEECCCCCEEEEEEcCCCccccCCEEE-CCE-EEEEeC-Cc
Confidence               33 2467888753                  3689999998887654322  11122223332 454 998864 56


Q ss_pred             eEEEE
Q 026118          175 RCVKH  179 (243)
Q Consensus       175 ~i~~~  179 (243)
                      .|+.|
T Consensus       372 ~l~~~  376 (377)
T TIGR03300       372 DLYAF  376 (377)
T ss_pred             eEEEe
Confidence            77765

Members of this protein family are YfgL, a lipoprotein component of a complex that acts protein insertion into the bacterial outer membrane. Other members of this complex are NlpB, YfiO, and YaeT. This protein contains multiple copies of a repeat that, in other contexts, are associated with binding of the coenzyme PQQ.

>PF03088 Str_synth: Strictosidine synthase; InterPro: IPR018119 This entry represents a conserved region found in strictosidine synthase (4

Probab=97.14  E-value=0.0045  Score=40.41  Aligned_cols=63  Identities=17%  Similarity=0.289  Sum_probs=43.1

Q ss_pred             cEEEcCC-CcEEEEeC------------------CCcEEEEcc-CCceeEecccCCccccceEEccCCCEEEEEeCC-Cc
Q 026118           14 DVSVDGN-GVLYTATG------------------DGWIKRMHP-NGTWEDWHQVGSQSLLGLTTTKENNVIIVCDSQ-QG   72 (243)
Q Consensus        14 ~i~~d~~-g~l~~~~~------------------~~~i~~~~~-~g~~~~~~~~~~~~~~~i~~~~~g~l~~v~~~~-~g   72 (243)
                      .++++++ |.+|+++.                  .|+++++|+ +++.+........|+ |+++++|+..++|+... ..
T Consensus         2 dldv~~~~g~vYfTdsS~~~~~~~~~~~~le~~~~GRll~ydp~t~~~~vl~~~L~fpN-GVals~d~~~vlv~Et~~~R   80 (89)
T PF03088_consen    2 DLDVDQDTGTVYFTDSSSRYDRRDWVYDLLEGRPTGRLLRYDPSTKETTVLLDGLYFPN-GVALSPDESFVLVAETGRYR   80 (89)
T ss_dssp             EEEE-TTT--EEEEES-SS--TTGHHHHHHHT---EEEEEEETTTTEEEEEEEEESSEE-EEEE-TTSSEEEEEEGGGTE
T ss_pred             ceeEecCCCEEEEEeCccccCccceeeeeecCCCCcCEEEEECCCCeEEEehhCCCccC-eEEEcCCCCEEEEEeccCce
Confidence            5788887 89999862                  378999996 455666666566789 99999999976777643 45


Q ss_pred             EEEEe
Q 026118           73 LLKVS   77 (243)
Q Consensus        73 l~~~~   77 (243)
                      |.++.
T Consensus        81 i~ryw   85 (89)
T PF03088_consen   81 ILRYW   85 (89)
T ss_dssp             EEEEE
T ss_pred             EEEEE
Confidence            77665

3.3.2 from EC), a key enzyme in alkaloid biosynthesis. It catalyses the Pictet-Spengler stereospecific condensation of tryptamine with secologanin to form strictosidine []. The structure of the native enzyme from the Indian medicinal plant Rauvolfia serpentina (Serpentwood) (Devilpepper) represents the first example of a six-bladed four-stranded beta-propeller fold from the plant kingdom [].; GO: 0016844 strictosidine synthase activity, 0009058 biosynthetic process; PDB: 2FPB_A 2V91_B 2FP8_A 3V1S_B 2FPC_A 2VAQ_A 2FP9_B.

>KOG0263 consensus Transcription initiation factor TFIID, subunit TAF5 (also component of histone acetyltransferase SAGA) [Transcription]

Probab=97.13  E-value=0.02  Score=50.73  Aligned_cols=108  Identities=9%  Similarity=0.036  Sum_probs=70.4

Q ss_pred             ceEEccCCCEEEEEeCCCcEEEEe-cCC-cEEEEeccCCCcccCCccEEEcCCCcEEEEeCCCCCCcccccccccccCCC
Q 026118           54 GLTTTKENNVIIVCDSQQGLLKVS-EEG-VTVLVSQFNGSQLRFANDVIEASDGSLYFTVSSTKFTPAEYYLDLVSGEPH  131 (243)
Q Consensus        54 ~i~~~~~g~l~~v~~~~~gl~~~~-~~g-~~~~~~~~~~~~~~~~~~l~~d~~G~l~v~~~~~~~~~~~~~~~~~~~~~~  131 (243)
                      ++.|.|+.+++..+..+.-+-.+| .+| ...+..   | ....+..|+++|+|+...+-                 ...
T Consensus       540 cv~FHPNs~Y~aTGSsD~tVRlWDv~~G~~VRiF~---G-H~~~V~al~~Sp~Gr~LaSg-----------------~ed  598 (707)
T KOG0263|consen  540 CVSFHPNSNYVATGSSDRTVRLWDVSTGNSVRIFT---G-HKGPVTALAFSPCGRYLASG-----------------DED  598 (707)
T ss_pred             eEEECCcccccccCCCCceEEEEEcCCCcEEEEec---C-CCCceEEEEEcCCCceEeec-----------------ccC
Confidence            688999988622222223355666 667 333332   2 23456789999999876652                 234


Q ss_pred             ceEEEEeCCCCeeEEe-eccccccceEEEcCCCCEEEEEEcCCCeEEEEEeec
Q 026118          132 GVLLKYDPSTNQTSLV-LDGLYFANGVALSEDERFLVVCESWKFRCVKHFLKV  183 (243)
Q Consensus       132 g~v~~~~~~~~~~~~~-~~~~~~~~gi~~~~dg~~l~v~~~~~~~i~~~~~~~  183 (243)
                      +.|..+|..++++-.. ........+|.|+.||+ +.++...+++|..+|+..
T Consensus       599 ~~I~iWDl~~~~~v~~l~~Ht~ti~SlsFS~dg~-vLasgg~DnsV~lWD~~~  650 (707)
T KOG0263|consen  599 GLIKIWDLANGSLVKQLKGHTGTIYSLSFSRDGN-VLASGGADNSVRLWDLTK  650 (707)
T ss_pred             CcEEEEEcCCCcchhhhhcccCceeEEEEecCCC-EEEecCCCCeEEEEEchh
Confidence            5677788876654332 23345667899999999 666667789999998764

>cd00216 PQQ_DH Dehydrogenases with pyrrolo-quinoline quinone (PQQ) as cofactor, like ethanol, methanol, and membrane bound glucose dehydrogenases

Probab=97.12  E-value=0.054  Score=47.29  Aligned_cols=115  Identities=15%  Similarity=0.106  Sum_probs=61.7

Q ss_pred             CCcEEEEeCCCcEEEEc-cCCceeEecccCCc-----c---ccceEEccCCCEEEEEeCCCcEEEEe-cCC-cEEEEecc
Q 026118           20 NGVLYTATGDGWIKRMH-PNGTWEDWHQVGSQ-----S---LLGLTTTKENNVIIVCDSQQGLLKVS-EEG-VTVLVSQF   88 (243)
Q Consensus        20 ~g~l~~~~~~~~i~~~~-~~g~~~~~~~~~~~-----~---~~~i~~~~~g~l~~v~~~~~gl~~~~-~~g-~~~~~~~~   88 (243)
                      +|++|+++.++.|+.+| .+|+...-......     +   ..++++..++++ |+++....|+.+| .+| ...... .
T Consensus        61 ~g~vy~~~~~g~l~AlD~~tG~~~W~~~~~~~~~~~~~~~~~~g~~~~~~~~V-~v~~~~g~v~AlD~~TG~~~W~~~-~  138 (488)
T cd00216          61 DGDMYFTTSHSALFALDAATGKVLWRYDPKLPADRGCCDVVNRGVAYWDPRKV-FFGTFDGRLVALDAETGKQVWKFG-N  138 (488)
T ss_pred             CCEEEEeCCCCcEEEEECCCChhhceeCCCCCccccccccccCCcEEccCCeE-EEecCCCeEEEEECCCCCEeeeec-C
Confidence            77899998889999999 46654422111010     0   102233222566 8888777899999 778 333222 1


Q ss_pred             CCCc---ccCCccEEEcCCCcEEEEeCCCCCCcccccccccccCCCceEEEEeCCCCeeEE
Q 026118           89 NGSQ---LRFANDVIEASDGSLYFTVSSTKFTPAEYYLDLVSGEPHGVLLKYDPSTNQTSL  146 (243)
Q Consensus        89 ~~~~---~~~~~~l~~d~~G~l~v~~~~~~~~~~~~~~~~~~~~~~g~v~~~~~~~~~~~~  146 (243)
                      ....   ........+. ++.+|++.....+.         .....+.|+.+|.++|+...
T Consensus       139 ~~~~~~~~~i~ssP~v~-~~~v~vg~~~~~~~---------~~~~~g~v~alD~~TG~~~W  189 (488)
T cd00216         139 NDQVPPGYTMTGAPTIV-KKLVIIGSSGAEFF---------ACGVRGALRAYDVETGKLLW  189 (488)
T ss_pred             CCCcCcceEecCCCEEE-CCEEEEeccccccc---------cCCCCcEEEEEECCCCceee
Confidence            1110   0001122333 36777765331110         00124689999999887654

The alignment model contains an 8-bladed beta-propeller.

>PF14870 PSII_BNR: Photosynthesis system II assembly factor YCF48; PDB: 2XBG_A

Probab=97.12  E-value=0.11  Score=42.32  Aligned_cols=180  Identities=16%  Similarity=0.167  Sum_probs=82.6

Q ss_pred             CCcccEEEcCCCcEEEEeCCCcEEEEccCC-ceeEecccCCcc----ccceEEccCCCEEEEEeCCCcEEEEe-cCC--c
Q 026118           10 NHPEDVSVDGNGVLYTATGDGWIKRMHPNG-TWEDWHQVGSQS----LLGLTTTKENNVIIVCDSQQGLLKVS-EEG--V   81 (243)
Q Consensus        10 ~~p~~i~~d~~g~l~~~~~~~~i~~~~~~g-~~~~~~~~~~~~----~~~i~~~~~g~l~~v~~~~~gl~~~~-~~g--~   81 (243)
                      .....|++..+.+-|+....+.|++-...| ++.........+    ...+.+.. .+. |++.. .+++... +.|  .
T Consensus        17 ~~l~dV~F~d~~~G~~VG~~g~il~T~DGG~tW~~~~~~~~~~~~~~l~~I~f~~-~~g-~ivG~-~g~ll~T~DgG~tW   93 (302)
T PF14870_consen   17 KPLLDVAFVDPNHGWAVGAYGTILKTTDGGKTWQPVSLDLDNPFDYHLNSISFDG-NEG-WIVGE-PGLLLHTTDGGKTW   93 (302)
T ss_dssp             S-EEEEEESSSS-EEEEETTTEEEEESSTTSS-EE-----S-----EEEEEEEET-TEE-EEEEE-TTEEEEESSTTSS-
T ss_pred             CceEEEEEecCCEEEEEecCCEEEEECCCCccccccccCCCccceeeEEEEEecC-Cce-EEEcC-CceEEEecCCCCCc
Confidence            355678887666777665667777775333 355443221221    22555543 355 77654 4554444 444  4


Q ss_pred             EEEEe--ccCCCcccCCccEEEcCCCcEEEEeCCCCCCcccccccccccCCCceEEEEeCCCCeeEEee-ccccccceEE
Q 026118           82 TVLVS--QFNGSQLRFANDVIEASDGSLYFTVSSTKFTPAEYYLDLVSGEPHGVLLKYDPSTNQTSLVL-DGLYFANGVA  158 (243)
Q Consensus        82 ~~~~~--~~~~~~~~~~~~l~~d~~G~l~v~~~~~~~~~~~~~~~~~~~~~~g~v~~~~~~~~~~~~~~-~~~~~~~gi~  158 (243)
                      +.+..  ..++    .+..+....++.++++..                  .+.||+=.-.+...+.+. ......+.+.
T Consensus        94 ~~v~l~~~lpg----s~~~i~~l~~~~~~l~~~------------------~G~iy~T~DgG~tW~~~~~~~~gs~~~~~  151 (302)
T PF14870_consen   94 ERVPLSSKLPG----SPFGITALGDGSAELAGD------------------RGAIYRTTDGGKTWQAVVSETSGSINDIT  151 (302)
T ss_dssp             EE----TT-SS-----EEEEEEEETTEEEEEET------------------T--EEEESSTTSSEEEEE-S----EEEEE
T ss_pred             EEeecCCCCCC----CeeEEEEcCCCcEEEEcC------------------CCcEEEeCCCCCCeeEcccCCcceeEeEE
Confidence            44332  1121    233455445566666532                  357877555544555543 2234456677


Q ss_pred             EcCCCCEEEEEEcCCCeEEE-EEeecCCCcceEEeccCCCCCCCceEECCCCCEEEEEecCC
Q 026118          159 LSEDERFLVVCESWKFRCVK-HFLKVSGRTDREIFIDNLPGGPDNVNLARDGSFWISIIKMD  219 (243)
Q Consensus       159 ~~~dg~~l~v~~~~~~~i~~-~~~~~~~~~~~~~~~~~~~~~~~~i~~d~~G~lwv~~~~~~  219 (243)
                      .++||+++.|+.  .+.++. .+. +  ....+........+..+|.++++|+||+.+..+.
T Consensus       152 r~~dG~~vavs~--~G~~~~s~~~-G--~~~w~~~~r~~~~riq~~gf~~~~~lw~~~~Gg~  208 (302)
T PF14870_consen  152 RSSDGRYVAVSS--RGNFYSSWDP-G--QTTWQPHNRNSSRRIQSMGFSPDGNLWMLARGGQ  208 (302)
T ss_dssp             E-TTS-EEEEET--TSSEEEEE-T-T---SS-EEEE--SSS-EEEEEE-TTS-EEEEETTTE
T ss_pred             ECCCCcEEEEEC--cccEEEEecC-C--CccceEEccCccceehhceecCCCCEEEEeCCcE
Confidence            789998666653  355553 232 1  1222222222234567799999999999875443

>KOG0771 consensus Prolactin regulatory element-binding protein/Protein transport protein SEC12p [Intracellular trafficking, secretion, and vesicular transport]

Probab=97.11  E-value=0.035  Score=45.83  Aligned_cols=177  Identities=13%  Similarity=0.091  Sum_probs=87.9

Q ss_pred             ccEEEcCCCcEE-EEeCCCcEEEEc-cCCce-eEecccCCccccceEEccCCCEEEEEeCCCcEEEEe-cCCcEEEEecc
Q 026118           13 EDVSVDGNGVLY-TATGDGWIKRMH-PNGTW-EDWHQVGSQSLLGLTTTKENNVIIVCDSQQGLLKVS-EEGVTVLVSQF   88 (243)
Q Consensus        13 ~~i~~d~~g~l~-~~~~~~~i~~~~-~~g~~-~~~~~~~~~~~~~i~~~~~g~l~~v~~~~~gl~~~~-~~g~~~~~~~~   88 (243)
                      ..+++..+|.+. ++..+|.++.++ |.-.. ........... .|.|++||++ .+.........++ .+|...-...+
T Consensus       148 k~vaf~~~gs~latgg~dg~lRv~~~Ps~~t~l~e~~~~~eV~-DL~FS~dgk~-lasig~d~~~VW~~~~g~~~a~~t~  225 (398)
T KOG0771|consen  148 KVVAFNGDGSKLATGGTDGTLRVWEWPSMLTILEEIAHHAEVK-DLDFSPDGKF-LASIGADSARVWSVNTGAALARKTP  225 (398)
T ss_pred             eEEEEcCCCCEeeeccccceEEEEecCcchhhhhhHhhcCccc-cceeCCCCcE-EEEecCCceEEEEeccCchhhhcCC
Confidence            456677776554 344666666666 54332 22222223445 8999999988 4544445666666 66621111111


Q ss_pred             CCCcccCCccEEEcCCC---cEEEEeCCCCCCcccccccccccCCCceE--EEEeCCCC----eeEEeeccccccceEEE
Q 026118           89 NGSQLRFANDVIEASDG---SLYFTVSSTKFTPAEYYLDLVSGEPHGVL--LKYDPSTN----QTSLVLDGLYFANGVAL  159 (243)
Q Consensus        89 ~~~~~~~~~~l~~d~~G---~l~v~~~~~~~~~~~~~~~~~~~~~~g~v--~~~~~~~~----~~~~~~~~~~~~~gi~~  159 (243)
                      .... .....+.+..|+   .+++++...               ..++|  +++..-.+    +.+...........|++
T Consensus       226 ~~k~-~~~~~cRF~~d~~~~~l~laa~~~---------------~~~~v~~~~~~~w~~~~~l~~~~~~~~~~siSsl~V  289 (398)
T KOG0771|consen  226 FSKD-EMFSSCRFSVDNAQETLRLAASQF---------------PGGGVRLCDISLWSGSNFLRLRKKIKRFKSISSLAV  289 (398)
T ss_pred             cccc-hhhhhceecccCCCceEEEEEecC---------------CCCceeEEEeeeeccccccchhhhhhccCcceeEEE
Confidence            1111 112223444333   567665431               11222  22221111    22223333446678999


Q ss_pred             cCCCCEEEEEEcCCCeEEEEEeecCCCcceEEeccCCCCCCCceEECCCCC
Q 026118          160 SEDERFLVVCESWKFRCVKHFLKVSGRTDREIFIDNLPGGPDNVNLARDGS  210 (243)
Q Consensus       160 ~~dg~~l~v~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~i~~d~~G~  210 (243)
                      +.+|+++-++.. ++.|..|+...  +...+.+..--.+...++.+.|+-+
T Consensus       290 S~dGkf~AlGT~-dGsVai~~~~~--lq~~~~vk~aH~~~VT~ltF~Pdsr  337 (398)
T KOG0771|consen  290 SDDGKFLALGTM-DGSVAIYDAKS--LQRLQYVKEAHLGFVTGLTFSPDSR  337 (398)
T ss_pred             cCCCcEEEEecc-CCcEEEEEece--eeeeEeehhhheeeeeeEEEcCCcC
Confidence            999997777754 78888887542  2222332221122344555555543

>PLN00181 protein SPA1-RELATED; Provisional

Probab=97.11  E-value=0.19  Score=46.72  Aligned_cols=149  Identities=13%  Similarity=0.027  Sum_probs=82.7

Q ss_pred             cccEEEcCCCcEE-EEeCCCcEEEEccCC-----cee---EecccCCccccceEEcc-CCCEEEEEeCCCcEEEEe-cCC
Q 026118           12 PEDVSVDGNGVLY-TATGDGWIKRMHPNG-----TWE---DWHQVGSQSLLGLTTTK-ENNVIIVCDSQQGLLKVS-EEG   80 (243)
Q Consensus        12 p~~i~~d~~g~l~-~~~~~~~i~~~~~~g-----~~~---~~~~~~~~~~~~i~~~~-~g~l~~v~~~~~gl~~~~-~~g   80 (243)
                      -.+++++++|.+. ++..++.|..++...     ...   ...........++++++ +++++..+..++-+..+| .++
T Consensus       486 V~~i~fs~dg~~latgg~D~~I~iwd~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~las~~~Dg~v~lWd~~~~  565 (793)
T PLN00181        486 VCAIGFDRDGEFFATAGVNKKIKIFECESIIKDGRDIHYPVVELASRSKLSGICWNSYIKSQVASSNFEGVVQVWDVARS  565 (793)
T ss_pred             EEEEEECCCCCEEEEEeCCCEEEEEECCcccccccccccceEEecccCceeeEEeccCCCCEEEEEeCCCeEEEEECCCC
Confidence            3458889988755 455788888887321     110   00011111222667765 355635555444456667 555


Q ss_pred             -c-EEEEeccCCCcccCCccEEEcC-CCcEEEEeCCCCCCcccccccccccCCCceEEEEeCCCCeeEEeeccccccceE
Q 026118           81 -V-TVLVSQFNGSQLRFANDVIEAS-DGSLYFTVSSTKFTPAEYYLDLVSGEPHGVLLKYDPSTNQTSLVLDGLYFANGV  157 (243)
Q Consensus        81 -~-~~~~~~~~~~~~~~~~~l~~d~-~G~l~v~~~~~~~~~~~~~~~~~~~~~~g~v~~~~~~~~~~~~~~~~~~~~~gi  157 (243)
                       . ..+.    + ....+.++++++ ++.++++.+.                 .+.|..+|..++..............+
T Consensus       566 ~~~~~~~----~-H~~~V~~l~~~p~~~~~L~Sgs~-----------------Dg~v~iWd~~~~~~~~~~~~~~~v~~v  623 (793)
T PLN00181        566 QLVTEMK----E-HEKRVWSIDYSSADPTLLASGSD-----------------DGSVKLWSINQGVSIGTIKTKANICCV  623 (793)
T ss_pred             eEEEEec----C-CCCCEEEEEEcCCCCCEEEEEcC-----------------CCEEEEEECCCCcEEEEEecCCCeEEE
Confidence             2 2221    1 123567888986 7777776432                 356777777655443322222334567


Q ss_pred             EEc-CCCCEEEEEEcCCCeEEEEEeec
Q 026118          158 ALS-EDERFLVVCESWKFRCVKHFLKV  183 (243)
Q Consensus       158 ~~~-~dg~~l~v~~~~~~~i~~~~~~~  183 (243)
                      .++ ++++.+. +...++.|..||...
T Consensus       624 ~~~~~~g~~la-tgs~dg~I~iwD~~~  649 (793)
T PLN00181        624 QFPSESGRSLA-FGSADHKVYYYDLRN  649 (793)
T ss_pred             EEeCCCCCEEE-EEeCCCeEEEEECCC
Confidence            774 4677444 445678999999864

>PF08662 eIF2A: Eukaryotic translation initiation factor eIF2A; InterPro: IPR013979 This entry contains beta propellor domains found in eukaryotic translation initiation factors and TolB domain-containing proteins

Probab=97.10  E-value=0.067  Score=40.57  Aligned_cols=99  Identities=15%  Similarity=0.111  Sum_probs=60.8

Q ss_pred             CccEEEcCCCcEEEEeCCCCCCcccccccccccCCCceEEEEeCCCCeeEEeeccccccceEEEcCCCCEEEEEEcC--C
Q 026118           96 ANDVIEASDGSLYFTVSSTKFTPAEYYLDLVSGEPHGVLLKYDPSTNQTSLVLDGLYFANGVALSEDERFLVVCESW--K  173 (243)
Q Consensus        96 ~~~l~~d~~G~l~v~~~~~~~~~~~~~~~~~~~~~~g~v~~~~~~~~~~~~~~~~~~~~~gi~~~~dg~~l~v~~~~--~  173 (243)
                      +.+++.+|+|+-++...+               .....+..||.+...+..+.  ....+.|.++|+|++|.++...  .
T Consensus        62 I~~~~WsP~g~~favi~g---------------~~~~~v~lyd~~~~~i~~~~--~~~~n~i~wsP~G~~l~~~g~~n~~  124 (194)
T PF08662_consen   62 IHDVAWSPNGNEFAVIYG---------------SMPAKVTLYDVKGKKIFSFG--TQPRNTISWSPDGRFLVLAGFGNLN  124 (194)
T ss_pred             eEEEEECcCCCEEEEEEc---------------cCCcccEEEcCcccEeEeec--CCCceEEEECCCCCEEEEEEccCCC
Confidence            678899999975543211               11235666777633333332  3455789999999988887643  3


Q ss_pred             CeEEEEEeecCCCcceEEeccCCCCCCCceEECCCCCEEEEEe
Q 026118          174 FRCVKHFLKVSGRTDREIFIDNLPGGPDNVNLARDGSFWISII  216 (243)
Q Consensus       174 ~~i~~~~~~~~~~~~~~~~~~~~~~~~~~i~~d~~G~lwv~~~  216 (243)
                      +.|..+|.+.     .+.+..........++.+++|+..+...
T Consensus       125 G~l~~wd~~~-----~~~i~~~~~~~~t~~~WsPdGr~~~ta~  162 (194)
T PF08662_consen  125 GDLEFWDVRK-----KKKISTFEHSDATDVEWSPDGRYLATAT  162 (194)
T ss_pred             cEEEEEECCC-----CEEeeccccCcEEEEEEcCCCCEEEEEE
Confidence            5688888763     2222222222356689999999666543

>TIGR03075 PQQ_enz_alc_DH PQQ-dependent dehydrogenase, methanol/ethanol family

Probab=97.09  E-value=0.05  Score=47.92  Aligned_cols=153  Identities=12%  Similarity=0.066  Sum_probs=84.6

Q ss_pred             CCcEEEEeCCCcEEEEc-cCCceeEecccC----Ccc-------ccceEEccCCCEEEEEeCCCcEEEEe-cCC-cEEEE
Q 026118           20 NGVLYTATGDGWIKRMH-PNGTWEDWHQVG----SQS-------LLGLTTTKENNVIIVCDSQQGLLKVS-EEG-VTVLV   85 (243)
Q Consensus        20 ~g~l~~~~~~~~i~~~~-~~g~~~~~~~~~----~~~-------~~~i~~~~~g~l~~v~~~~~gl~~~~-~~g-~~~~~   85 (243)
                      +|.||+++..+.|+.+| .+|+..-.....    ..+       ..++++. ++++ |+++....|+.+| .+| ...-.
T Consensus        69 ~g~vyv~s~~g~v~AlDa~TGk~lW~~~~~~~~~~~~~~~~~~~~rg~av~-~~~v-~v~t~dg~l~ALDa~TGk~~W~~  146 (527)
T TIGR03075        69 DGVMYVTTSYSRVYALDAKTGKELWKYDPKLPDDVIPVMCCDVVNRGVALY-DGKV-FFGTLDARLVALDAKTGKVVWSK  146 (527)
T ss_pred             CCEEEEECCCCcEEEEECCCCceeeEecCCCCcccccccccccccccceEE-CCEE-EEEcCCCEEEEEECCCCCEEeec
Confidence            68999998888899999 567644221110    000       1133442 3566 8888777899999 788 33221


Q ss_pred             eccCCC-cccCCccEEEcCCCcEEEEeCCCCCCcccccccccccCCCceEEEEeCCCCeeEEeeccc-------------
Q 026118           86 SQFNGS-QLRFANDVIEASDGSLYFTVSSTKFTPAEYYLDLVSGEPHGVLLKYDPSTNQTSLVLDGL-------------  151 (243)
Q Consensus        86 ~~~~~~-~~~~~~~l~~d~~G~l~v~~~~~~~~~~~~~~~~~~~~~~g~v~~~~~~~~~~~~~~~~~-------------  151 (243)
                      ...... ........++ .+|.++++.+...+            ...+.|+.+|.++|+...-....             
T Consensus       147 ~~~~~~~~~~~tssP~v-~~g~Vivg~~~~~~------------~~~G~v~AlD~~TG~~lW~~~~~p~~~~~~~~~~~~  213 (527)
T TIGR03075       147 KNGDYKAGYTITAAPLV-VKGKVITGISGGEF------------GVRGYVTAYDAKTGKLVWRRYTVPGDMGYLDKADKP  213 (527)
T ss_pred             ccccccccccccCCcEE-ECCEEEEeeccccc------------CCCcEEEEEECCCCceeEeccCcCCCcccccccccc
Confidence            111100 0000111122 25688887543211            13467888888888755321110             


Q ss_pred             --------------------cccceEEEcCCCCEEEEEEcC---------------CCeEEEEEeecCCCc
Q 026118          152 --------------------YFANGVALSEDERFLVVCESW---------------KFRCVKHFLKVSGRT  187 (243)
Q Consensus       152 --------------------~~~~gi~~~~dg~~l~v~~~~---------------~~~i~~~~~~~~~~~  187 (243)
                                          ..-..+++|++.+.+|+....               .++|..+|.+++++.
T Consensus       214 ~~~~~~~~tw~~~~~~~gg~~~W~~~s~D~~~~lvy~~tGnp~p~~~~~r~gdnl~~~s~vAld~~TG~~~  284 (527)
T TIGR03075       214 VGGEPGAKTWPGDAWKTGGGATWGTGSYDPETNLIYFGTGNPSPWNSHLRPGDNLYTSSIVARDPDTGKIK  284 (527)
T ss_pred             cccccccCCCCCCccccCCCCccCceeEcCCCCeEEEeCCCCCCCCCCCCCCCCccceeEEEEccccCCEE
Confidence                                001246889888889987521               237888888765443

This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Genes in this family often are found adjacent to the PQQ biosynthesis genes themselves. An unusual, strained disulfide bond between adjacent Cys residues contributes to PQQ-binding, as does a Trp residue that is part of a PQQ enzyme repeat (see pfam01011). Characterized members include the dehydrogenase subunit of a membrane-anchored, three subunit alcohol (ethanol) dehydrogenase of Gluconobacter suboxydans, a homodimeric ethanol dehydrogenase in Pseudomonas aeruginosa, and the large subunit of an alpha2/beta2 heterotetrameric methanol dehydrogenase in Methylobacterium extorquens.

>KOG0272 consensus U4/U6 small nuclear ribonucleoprotein Prp4 (contains WD40 repeats) [RNA processing and modification]

Probab=97.08  E-value=0.034  Score=46.10  Aligned_cols=141  Identities=11%  Similarity=0.092  Sum_probs=77.6

Q ss_pred             ccceEEccCCCEEEEEeCCCcEE-EEe-cCCcEEEEeccCCCcccCCccEEEcCCCcEEEEeCCCCCCcccccccccccC
Q 026118           52 LLGLTTTKENNVIIVCDSQQGLL-KVS-EEGVTVLVSQFNGSQLRFANDVIEASDGSLYFTVSSTKFTPAEYYLDLVSGE  129 (243)
Q Consensus        52 ~~~i~~~~~g~l~~v~~~~~gl~-~~~-~~g~~~~~~~~~~~~~~~~~~l~~d~~G~l~v~~~~~~~~~~~~~~~~~~~~  129 (243)
                      +.++++.+||.+ ..+..-..+- .+| .+|...+.  .++ ..-.+.+|.++|.|....+.++.               
T Consensus       306 v~~iaf~~DGSL-~~tGGlD~~~RvWDlRtgr~im~--L~g-H~k~I~~V~fsPNGy~lATgs~D---------------  366 (459)
T KOG0272|consen  306 VFSIAFQPDGSL-AATGGLDSLGRVWDLRTGRCIMF--LAG-HIKEILSVAFSPNGYHLATGSSD---------------  366 (459)
T ss_pred             cceeEecCCCce-eeccCccchhheeecccCcEEEE--ecc-cccceeeEeECCCceEEeecCCC---------------
Confidence            448999999998 3333223443 445 67733322  122 22356789999999887775431               


Q ss_pred             CCceEEEEeCCCCeeEEeeccccccceEEEcCCCCEEEEEEcCCCeEEEEEeecCCCcceEEeccCCCCCCCceEECCCC
Q 026118          130 PHGVLLKYDPSTNQTSLVLDGLYFANGVALSEDERFLVVCESWKFRCVKHFLKVSGRTDREIFIDNLPGGPDNVNLARDG  209 (243)
Q Consensus       130 ~~g~v~~~~~~~~~~~~~~~~~~~~~gi~~~~dg~~l~v~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~i~~d~~G  209 (243)
                      ..-+||.+... ..+-.++........+.++|+..+..++...++.+-.+...+-.  -.+.+. +-.+..-++.+.++|
T Consensus       367 nt~kVWDLR~r-~~ly~ipAH~nlVS~Vk~~p~~g~fL~TasyD~t~kiWs~~~~~--~~ksLa-GHe~kV~s~Dis~d~  442 (459)
T KOG0272|consen  367 NTCKVWDLRMR-SELYTIPAHSNLVSQVKYSPQEGYFLVTASYDNTVKIWSTRTWS--PLKSLA-GHEGKVISLDISPDS  442 (459)
T ss_pred             CcEEEeeeccc-ccceecccccchhhheEecccCCeEEEEcccCcceeeecCCCcc--cchhhc-CCccceEEEEeccCC
Confidence            22356665543 22223333345567889998655566676777887777644311  111111 122234446666777


Q ss_pred             CEEEEE
Q 026118          210 SFWISI  215 (243)
Q Consensus       210 ~lwv~~  215 (243)
                      ...++.
T Consensus       443 ~~i~t~  448 (459)
T KOG0272|consen  443 QAIATS  448 (459)
T ss_pred             ceEEEe
Confidence            655543

>KOG1273 consensus WD40 repeat protein [General function prediction only]

Probab=97.07  E-value=0.11  Score=41.69  Aligned_cols=182  Identities=8%  Similarity=0.013  Sum_probs=97.9

Q ss_pred             cccEEEcCCCcEE-EEeCCCcEEEEc-cCCceeEecccCCccccceEEccCCCEEEEEeCCCcEEEEe-cCC--cEEEEe
Q 026118           12 PEDVSVDGNGVLY-TATGDGWIKRMH-PNGTWEDWHQVGSQSLLGLTTTKENNVIIVCDSQQGLLKVS-EEG--VTVLVS   86 (243)
Q Consensus        12 p~~i~~d~~g~l~-~~~~~~~i~~~~-~~g~~~~~~~~~~~~~~~i~~~~~g~l~~v~~~~~gl~~~~-~~g--~~~~~~   86 (243)
                      +.++.+.+.|.+. +|..+|+|..+| .+-.+.+.....-.|..+++-+++|++|..+..+..+..+| .+|  ...+.-
T Consensus        26 a~~~~Fs~~G~~lAvGc~nG~vvI~D~~T~~iar~lsaH~~pi~sl~WS~dgr~LltsS~D~si~lwDl~~gs~l~rirf  105 (405)
T KOG1273|consen   26 AECCQFSRWGDYLAVGCANGRVVIYDFDTFRIARMLSAHVRPITSLCWSRDGRKLLTSSRDWSIKLWDLLKGSPLKRIRF  105 (405)
T ss_pred             cceEEeccCcceeeeeccCCcEEEEEccccchhhhhhccccceeEEEecCCCCEeeeecCCceeEEEeccCCCceeEEEc
Confidence            6778888888654 666899999998 33333322222234655899999999866666666788888 677  333321


Q ss_pred             ccCCCcccCCccEEEcCC-CcEEEEe-CCCCCCcccccccccccCCCceEEEEeCCCCeeEEeecc--c-cccceEEEcC
Q 026118           87 QFNGSQLRFANDVIEASD-GSLYFTV-SSTKFTPAEYYLDLVSGEPHGVLLKYDPSTNQTSLVLDG--L-YFANGVALSE  161 (243)
Q Consensus        87 ~~~~~~~~~~~~l~~d~~-G~l~v~~-~~~~~~~~~~~~~~~~~~~~g~v~~~~~~~~~~~~~~~~--~-~~~~gi~~~~  161 (243)
                      .      +.+.+....|. -+..++. +.                ....|..+++....+-+...+  . ..+.--.+++
T Consensus       106 ~------spv~~~q~hp~k~n~~va~~~~----------------~sp~vi~~s~~~h~~Lp~d~d~dln~sas~~~fdr  163 (405)
T KOG1273|consen  106 D------SPVWGAQWHPRKRNKCVATIME----------------ESPVVIDFSDPKHSVLPKDDDGDLNSSASHGVFDR  163 (405)
T ss_pred             c------CccceeeeccccCCeEEEEEec----------------CCcEEEEecCCceeeccCCCccccccccccccccC
Confidence            1      11223344442 3444442 11                112333333211111111111  1 1122236899


Q ss_pred             CCCEEEEEEcCCCeEEEEEeecCCCc-ceEEeccCCCCCCCceEECCCCCEEEEEecCC
Q 026118          162 DERFLVVCESWKFRCVKHFLKVSGRT-DREIFIDNLPGGPDNVNLARDGSFWISIIKMD  219 (243)
Q Consensus       162 dg~~l~v~~~~~~~i~~~~~~~~~~~-~~~~~~~~~~~~~~~i~~d~~G~lwv~~~~~~  219 (243)
                      .|+++|.++ ..+.+..|+...-... .+++.   .......|.+...|+.++-+...+
T Consensus       164 ~g~yIitGt-sKGkllv~~a~t~e~vas~rit---s~~~IK~I~~s~~g~~liiNtsDR  218 (405)
T KOG1273|consen  164 RGKYIITGT-SKGKLLVYDAETLECVASFRIT---SVQAIKQIIVSRKGRFLIINTSDR  218 (405)
T ss_pred             CCCEEEEec-CcceEEEEecchheeeeeeeec---hheeeeEEEEeccCcEEEEecCCc
Confidence            999888775 5789999987642111 11111   111244577788887655444433

>PF14517 Tachylectin: Tachylectin; PDB: 1TL2_A

Probab=97.06  E-value=0.06  Score=41.56  Aligned_cols=156  Identities=17%  Similarity=0.171  Sum_probs=76.5

Q ss_pred             eecccccCCcccEEEcCCCcEEEEeCCCcEEEEc--cCCc------eeEecccCCccccceEEccCCCEEEEEeCCCcEE
Q 026118            3 KLGEGIVNHPEDVSVDGNGVLYTATGDGWIKRMH--PNGT------WEDWHQVGSQSLLGLTTTKENNVIIVCDSQQGLL   74 (243)
Q Consensus         3 ~~~~g~~~~p~~i~~d~~g~l~~~~~~~~i~~~~--~~g~------~~~~~~~~~~~~~~i~~~~~g~l~~v~~~~~gl~   74 (243)
                      +++.| ..+-..|+..|+|+||....+ .+++..  ..+.      -+.+....-.....|.+++.|.| |.......|+
T Consensus        28 ~iG~g-w~~~~~i~~~P~g~lY~I~~~-~lY~~~~~~~~~~~~~~~~~~Ig~g~W~~F~~i~~d~~G~L-YaV~~~G~ly  104 (229)
T PF14517_consen   28 TIGSG-WNNFRDIAAGPNGRLYAIRND-GLYRGSPSSSGGNTWDSGSKQIGDGGWNSFKFIFFDPTGVL-YAVTPDGKLY  104 (229)
T ss_dssp             EEESS--TT-SEEEE-TTS-EEEEETT-EEEEES---STT--HHHH-EEEE-S-GGG-SEEEE-TTS-E-EEEETT-EEE
T ss_pred             hcCcc-ccccceEEEcCCceEEEEECC-ceEEecCCccCcccccccCcccccCcccceeEEEecCCccE-EEecccccee
Confidence            45554 445556888899999988644 788773  1221      11222211122326888999988 9888766788


Q ss_pred             EEe-c-CC-cEEE---EeccCCCcccCCccEEEcCCCcEEEEeCCCCCCcccccccccccCCCceEEEE-eCCCCeeE--
Q 026118           75 KVS-E-EG-VTVL---VSQFNGSQLRFANDVIEASDGSLYFTVSSTKFTPAEYYLDLVSGEPHGVLLKY-DPSTNQTS--  145 (243)
Q Consensus        75 ~~~-~-~g-~~~~---~~~~~~~~~~~~~~l~~d~~G~l~v~~~~~~~~~~~~~~~~~~~~~~g~v~~~-~~~~~~~~--  145 (243)
                      +.. + ++ ....   ....-...-+....|..+++|.||..+..                  +.+++. .|+.+.-+  
T Consensus       105 R~~~~~~~~~~W~~~~~~~iG~~GW~~f~~vfa~~~GvLY~i~~d------------------g~~~~~~~p~~~~~~W~  166 (229)
T PF14517_consen  105 RHPRPTNGSDNWIGGSGKKIGGTGWNDFDAVFAGPNGVLYAITPD------------------GRLYRRYRPDGGSDRWL  166 (229)
T ss_dssp             EES---STT--HHH-HSEEEE-SSGGGEEEEEE-TTS-EEEEETT------------------E-EEEE---SSTT--HH
T ss_pred             eccCCCccCcchhhccceecccCCCccceEEEeCCCccEEEEcCC------------------CceEEeCCCCCCCCccc
Confidence            876 3 22 1111   11111111233456778899999988643                  457776 44432211  


Q ss_pred             ---Ee--eccccccceEEEcCCCCEEEEEEcCCCeEEEEEe
Q 026118          146 ---LV--LDGLYFANGVALSEDERFLVVCESWKFRCVKHFL  181 (243)
Q Consensus       146 ---~~--~~~~~~~~gi~~~~dg~~l~v~~~~~~~i~~~~~  181 (243)
                         .+  ..+.....-|.++++|. ||.. ..++.|+++..
T Consensus       167 ~~s~~v~~~gw~~~~~i~~~~~g~-L~~V-~~~G~lyr~~~  205 (229)
T PF14517_consen  167 SGSGLVGGGGWDSFHFIFFSPDGN-LWAV-KSNGKLYRGRP  205 (229)
T ss_dssp             HH-EEEESSSGGGEEEEEE-TTS--EEEE--ETTEEEEES-
T ss_pred             cccceeccCCcccceEEeeCCCCc-EEEE-ecCCEEeccCC
Confidence               11  12233456788899998 8888 45688987754

>COG3211 PhoX Predicted phosphatase [General function prediction only]

Probab=97.04  E-value=0.12  Score=44.97  Aligned_cols=127  Identities=11%  Similarity=0.119  Sum_probs=74.1

Q ss_pred             cccCCccEEEcC-CCcEEEEeCCCCCCcccccccccccCCCceEEEEeCCCC-------eeEEeec-----c--------
Q 026118           92 QLRFANDVIEAS-DGSLYFTVSSTKFTPAEYYLDLVSGEPHGVLLKYDPSTN-------QTSLVLD-----G--------  150 (243)
Q Consensus        92 ~~~~~~~l~~d~-~G~l~v~~~~~~~~~~~~~~~~~~~~~~g~v~~~~~~~~-------~~~~~~~-----~--------  150 (243)
                      ++..|.++++.| .|++|++.....-... .....-.....|.|+++-+.++       ++..+..     .        
T Consensus       415 ~mdRpE~i~~~p~~g~Vy~~lTNn~~r~~-~~aNpr~~n~~G~I~r~~p~~~d~t~~~ftWdlF~~aG~~~~~~~~~~~~  493 (616)
T COG3211         415 PMDRPEWIAVNPGTGEVYFTLTNNGKRSD-DAANPRAKNGYGQIVRWIPATGDHTDTKFTWDLFVEAGNPSVLEGGASAN  493 (616)
T ss_pred             cccCccceeecCCcceEEEEeCCCCcccc-ccCCCcccccccceEEEecCCCCccCccceeeeeeecCCccccccccccC
Confidence            355788899988 4789998643211100 0001111223478999988875       4544421     1        


Q ss_pred             -----ccccceEEEcCCCCEEEEEEcCCC--------eEEEEEeecCCCcceEEeccCCC-CCCCceEECCCCC-EEEEE
Q 026118          151 -----LYFANGVALSEDERFLVVCESWKF--------RCVKHFLKVSGRTDREIFIDNLP-GGPDNVNLARDGS-FWISI  215 (243)
Q Consensus       151 -----~~~~~gi~~~~dg~~l~v~~~~~~--------~i~~~~~~~~~~~~~~~~~~~~~-~~~~~i~~d~~G~-lwv~~  215 (243)
                           ...|.+|+|++.|+ ||+.+....        .++.+...++...+.+.+..... -...|.++.+||+ |+|+.
T Consensus       494 ~~~~~f~~PDnl~fD~~Gr-LWi~TDg~~s~~~~~~~G~~~m~~~~p~~g~~~rf~t~P~g~E~tG~~FspD~~TlFV~v  572 (616)
T COG3211         494 INANWFNSPDNLAFDPWGR-LWIQTDGSGSTLRNRFRGVTQMLTPDPKTGTIKRFLTGPIGCEFTGPCFSPDGKTLFVNV  572 (616)
T ss_pred             cccccccCCCceEECCCCC-EEEEecCCCCccCcccccccccccCCCccceeeeeccCCCcceeecceeCCCCceEEEEe
Confidence                 12378999999999 999876433        23322333334455555543222 1356789999987 88887


Q ss_pred             ecCCc
Q 026118          216 IKMDP  220 (243)
Q Consensus       216 ~~~~~  220 (243)
                      ..-+.
T Consensus       573 QHPGe  577 (616)
T COG3211         573 QHPGE  577 (616)
T ss_pred             cCCCC
Confidence            65543

>PF14870 PSII_BNR: Photosynthesis system II assembly factor YCF48; PDB: 2XBG_A

Probab=97.04  E-value=0.13  Score=41.85  Aligned_cols=142  Identities=10%  Similarity=0.071  Sum_probs=65.5

Q ss_pred             EEEcCCCcEEEEeCCCcEEEEccCC--ceeEecccC-CccccceEEccCCCEEEEEeCCCcEEEEec--CCcEEEEeccC
Q 026118           15 VSVDGNGVLYTATGDGWIKRMHPNG--TWEDWHQVG-SQSLLGLTTTKENNVIIVCDSQQGLLKVSE--EGVTVLVSQFN   89 (243)
Q Consensus        15 i~~d~~g~l~~~~~~~~i~~~~~~g--~~~~~~~~~-~~~~~~i~~~~~g~l~~v~~~~~gl~~~~~--~g~~~~~~~~~   89 (243)
                      +...++|++.+....|.++.--..|  .+..+.... .+.. .|.+++++.+ |+... +|.+++.+  +..........
T Consensus       150 ~~r~~dG~~vavs~~G~~~~s~~~G~~~w~~~~r~~~~riq-~~gf~~~~~l-w~~~~-Gg~~~~s~~~~~~~~w~~~~~  226 (302)
T PF14870_consen  150 ITRSSDGRYVAVSSRGNFYSSWDPGQTTWQPHNRNSSRRIQ-SMGFSPDGNL-WMLAR-GGQIQFSDDPDDGETWSEPII  226 (302)
T ss_dssp             EEE-TTS-EEEEETTSSEEEEE-TT-SS-EEEE--SSS-EE-EEEE-TTS-E-EEEET-TTEEEEEE-TTEEEEE---B-
T ss_pred             EEECCCCcEEEEECcccEEEEecCCCccceEEccCccceeh-hceecCCCCE-EEEeC-CcEEEEccCCCCccccccccC
Confidence            4444566655444555555332222  244443322 2334 8999999999 88874 56565552  32343333111


Q ss_pred             CCcc--cCCccEEEcCCCcEEEEeCCCCCCcccccccccccCCCceEEEEeCCCCeeEEeecccc---ccceEEEcCCCC
Q 026118           90 GSQL--RFANDVIEASDGSLYFTVSSTKFTPAEYYLDLVSGEPHGVLLKYDPSTNQTSLVLDGLY---FANGVALSEDER  164 (243)
Q Consensus        90 ~~~~--~~~~~l~~d~~G~l~v~~~~~~~~~~~~~~~~~~~~~~g~v~~~~~~~~~~~~~~~~~~---~~~gi~~~~dg~  164 (243)
                      ....  -..-+|+..+++.+|++..                  ++.|++=.-.+...++......   ....|.|..+.+
T Consensus       227 ~~~~~~~~~ld~a~~~~~~~wa~gg------------------~G~l~~S~DgGktW~~~~~~~~~~~n~~~i~f~~~~~  288 (302)
T PF14870_consen  227 PIKTNGYGILDLAYRPPNEIWAVGG------------------SGTLLVSTDGGKTWQKDRVGENVPSNLYRIVFVNPDK  288 (302)
T ss_dssp             TTSS--S-EEEEEESSSS-EEEEES------------------TT-EEEESSTTSS-EE-GGGTTSSS---EEEEEETTE
T ss_pred             CcccCceeeEEEEecCCCCEEEEeC------------------CccEEEeCCCCccceECccccCCCCceEEEEEcCCCc
Confidence            1111  1245778888999999842                  3456543333334554432222   235677766555


Q ss_pred             EEEEEEcCCCeEEEE
Q 026118          165 FLVVCESWKFRCVKH  179 (243)
Q Consensus       165 ~l~v~~~~~~~i~~~  179 (243)
                       -|+.. .++.|.||
T Consensus       289 -gf~lG-~~G~ll~~  301 (302)
T PF14870_consen  289 -GFVLG-QDGVLLRY  301 (302)
T ss_dssp             -EEEE--STTEEEEE
T ss_pred             -eEEEC-CCcEEEEe
Confidence             56554 35777776

>PLN00181 protein SPA1-RELATED; Provisional

Probab=97.02  E-value=0.28  Score=45.59  Aligned_cols=177  Identities=11%  Similarity=0.029  Sum_probs=93.5

Q ss_pred             ccEEEcC-CC-cEEEEeCCCcEEEEc-cCCce-eEecccCCccccceEEcc-CCCEEEEEeCCCcEEEEe-cCC-c-EEE
Q 026118           13 EDVSVDG-NG-VLYTATGDGWIKRMH-PNGTW-EDWHQVGSQSLLGLTTTK-ENNVIIVCDSQQGLLKVS-EEG-V-TVL   84 (243)
Q Consensus        13 ~~i~~d~-~g-~l~~~~~~~~i~~~~-~~g~~-~~~~~~~~~~~~~i~~~~-~g~l~~v~~~~~gl~~~~-~~g-~-~~~   84 (243)
                      .++++.+ ++ .|..+..++.|..+| ..++. ..+........ ++++++ ++.+|+.+..++.+..++ .++ . ..+
T Consensus       536 ~~l~~~~~~~~~las~~~Dg~v~lWd~~~~~~~~~~~~H~~~V~-~l~~~p~~~~~L~Sgs~Dg~v~iWd~~~~~~~~~~  614 (793)
T PLN00181        536 SGICWNSYIKSQVASSNFEGVVQVWDVARSQLVTEMKEHEKRVW-SIDYSSADPTLLASGSDDGSVKLWSINQGVSIGTI  614 (793)
T ss_pred             eeEEeccCCCCEEEEEeCCCeEEEEECCCCeEEEEecCCCCCEE-EEEEcCCCCCEEEEEcCCCEEEEEECCCCcEEEEE
Confidence            4566665 34 455566788899998 34433 22222222334 888985 677745555444566677 555 2 222


Q ss_pred             EeccCCCcccCCccEEEc-CCCcEEEEeCCCCCCcccccccccccCCCceEEEEeCCCCee--EEeeccccccceEEEcC
Q 026118           85 VSQFNGSQLRFANDVIEA-SDGSLYFTVSSTKFTPAEYYLDLVSGEPHGVLLKYDPSTNQT--SLVLDGLYFANGVALSE  161 (243)
Q Consensus        85 ~~~~~~~~~~~~~~l~~d-~~G~l~v~~~~~~~~~~~~~~~~~~~~~~g~v~~~~~~~~~~--~~~~~~~~~~~gi~~~~  161 (243)
                      ..      ...+.++.+. ++|.++++.+                 ..+.|+.+|..+...  ..+.........+.|. 
T Consensus       615 ~~------~~~v~~v~~~~~~g~~latgs-----------------~dg~I~iwD~~~~~~~~~~~~~h~~~V~~v~f~-  670 (793)
T PLN00181        615 KT------KANICCVQFPSESGRSLAFGS-----------------ADHKVYYYDLRNPKLPLCTMIGHSKTVSYVRFV-  670 (793)
T ss_pred             ec------CCCeEEEEEeCCCCCEEEEEe-----------------CCCeEEEEECCCCCccceEecCCCCCEEEEEEe-
Confidence            11      1234456664 4677666532                 346788888765431  2222222344567776 


Q ss_pred             CCCEEEEEEcCCCeEEEEEeecCCC----cceEEeccCCCCCCCceEECCCCCEEEEEe
Q 026118          162 DERFLVVCESWKFRCVKHFLKVSGR----TDREIFIDNLPGGPDNVNLARDGSFWISII  216 (243)
Q Consensus       162 dg~~l~v~~~~~~~i~~~~~~~~~~----~~~~~~~~~~~~~~~~i~~d~~G~lwv~~~  216 (243)
                      ++++++.+ ..++.|..|++.....    .....+. ........++++++|.+.++..
T Consensus       671 ~~~~lvs~-s~D~~ikiWd~~~~~~~~~~~~l~~~~-gh~~~i~~v~~s~~~~~lasgs  727 (793)
T PLN00181        671 DSSTLVSS-STDNTLKLWDLSMSISGINETPLHSFM-GHTNVKNFVGLSVSDGYIATGS  727 (793)
T ss_pred             CCCEEEEE-ECCCEEEEEeCCCCccccCCcceEEEc-CCCCCeeEEEEcCCCCEEEEEe
Confidence            66645444 5678888888753210    1111221 1122334577777776544443

>KOG0639 consensus Transducin-like enhancer of split protein (contains WD40 repeats) [Chromatin structure and dynamics]

Probab=97.00  E-value=0.013  Score=49.66  Aligned_cols=111  Identities=13%  Similarity=0.171  Sum_probs=69.7

Q ss_pred             cccCCccEEEcCCCcEEEEeCCCCCCcccccccccccCCCceEEEEeCCCCeeEE--ee-ccccccceEEEcCCCCEEEE
Q 026118           92 QLRFANDVIEASDGSLYFTVSSTKFTPAEYYLDLVSGEPHGVLLKYDPSTNQTSL--VL-DGLYFANGVALSEDERFLVV  168 (243)
Q Consensus        92 ~~~~~~~l~~d~~G~l~v~~~~~~~~~~~~~~~~~~~~~~g~v~~~~~~~~~~~~--~~-~~~~~~~gi~~~~dg~~l~v  168 (243)
                      +.+++......+||+-.++.-                 .-..|...|...-..+.  .. ..-.....+++++|-+ +.+
T Consensus       464 rdnyiRSckL~pdgrtLivGG-----------------eastlsiWDLAapTprikaeltssapaCyALa~spDak-vcF  525 (705)
T KOG0639|consen  464 RDNYIRSCKLLPDGRTLIVGG-----------------EASTLSIWDLAAPTPRIKAELTSSAPACYALAISPDAK-VCF  525 (705)
T ss_pred             cccceeeeEecCCCceEEecc-----------------ccceeeeeeccCCCcchhhhcCCcchhhhhhhcCCccc-eee
Confidence            346777778889997444310                 11235555655333221  11 1123345789999999 666


Q ss_pred             EEcCCCeEEEEEeecCCCcceEEeccCCCCCCCc---eEECCCCC-EEEEEecCCchhhhhh
Q 026118          169 CESWKFRCVKHFLKVSGRTDREIFIDNLPGGPDN---VNLARDGS-FWISIIKMDPKGIQAL  226 (243)
Q Consensus       169 ~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~---i~~d~~G~-lwv~~~~~~~~~~~~~  226 (243)
                      +...++.|.+||+.+..+      .....|+++|   |.+..+|. ||-+..++..++++.-
T Consensus       526 sccsdGnI~vwDLhnq~~------VrqfqGhtDGascIdis~dGtklWTGGlDntvRcWDlr  581 (705)
T KOG0639|consen  526 SCCSDGNIAVWDLHNQTL------VRQFQGHTDGASCIDISKDGTKLWTGGLDNTVRCWDLR  581 (705)
T ss_pred             eeccCCcEEEEEccccee------eecccCCCCCceeEEecCCCceeecCCCccceeehhhh
Confidence            667889999999876322      2234455555   78888995 9999988887777643

>PF02333 Phytase: Phytase; InterPro: IPR003431 Phytase (3

Probab=96.99  E-value=0.067  Score=44.64  Aligned_cols=147  Identities=13%  Similarity=0.106  Sum_probs=72.7

Q ss_pred             CCCcEEEEe-CCCcEEEEccCCceeEecccCCccccce--EEc--cCCC---EEEEEeCC---C--cEEEEe-cCC-cEE
Q 026118           19 GNGVLYTAT-GDGWIKRMHPNGTWEDWHQVGSQSLLGL--TTT--KENN---VIIVCDSQ---Q--GLLKVS-EEG-VTV   83 (243)
Q Consensus        19 ~~g~l~~~~-~~~~i~~~~~~g~~~~~~~~~~~~~~~i--~~~--~~g~---l~~v~~~~---~--gl~~~~-~~g-~~~   83 (243)
                      +..-+++++ ..++++.++.+|+...... .++++ .+  ..+  -.|+   ++.+++..   .  .+++++ .++ .+.
T Consensus        66 p~kSlIigTdK~~GL~VYdL~Gk~lq~~~-~Gr~N-NVDvrygf~l~g~~vDlavas~R~~g~n~l~~f~id~~~g~L~~  143 (381)
T PF02333_consen   66 PAKSLIIGTDKKGGLYVYDLDGKELQSLP-VGRPN-NVDVRYGFPLNGKTVDLAVASDRSDGRNSLRLFRIDPDTGELTD  143 (381)
T ss_dssp             GGG-EEEEEETTTEEEEEETTS-EEEEE--SS-EE-EEEEEEEEEETTEEEEEEEEEE-CCCT-EEEEEEEETTTTEEEE
T ss_pred             cccceEEEEeCCCCEEEEcCCCcEEEeec-CCCcc-eeeeecceecCCceEEEEEEecCcCCCCeEEEEEecCCCCcceE
Confidence            344466666 6789999998887554432 23443 22  211  1233   32333322   2  267777 456 444


Q ss_pred             EEecc--CCCcccCCccEEE--cC-CCcEEEEeCCCCCCcccccccccccCCCce--EEEEeC-CCCeeE----Eeeccc
Q 026118           84 LVSQF--NGSQLRFANDVIE--AS-DGSLYFTVSSTKFTPAEYYLDLVSGEPHGV--LLKYDP-STNQTS----LVLDGL  151 (243)
Q Consensus        84 ~~~~~--~~~~~~~~~~l~~--d~-~G~l~v~~~~~~~~~~~~~~~~~~~~~~g~--v~~~~~-~~~~~~----~~~~~~  151 (243)
                      +....  -......+.++|.  ++ +|.+|+-...                ..|.  .|++.. ..+.+.    +-..-.
T Consensus       144 v~~~~~p~~~~~~e~yGlcly~~~~~g~~ya~v~~----------------k~G~~~Qy~L~~~~~g~v~~~lVR~f~~~  207 (381)
T PF02333_consen  144 VTDPAAPIATDLSEPYGLCLYRSPSTGALYAFVNG----------------KDGRVEQYELTDDGDGKVSATLVREFKVG  207 (381)
T ss_dssp             -CBTTC-EE-SSSSEEEEEEEE-TTT--EEEEEEE----------------TTSEEEEEEEEE-TTSSEEEEEEEEEE-S
T ss_pred             cCCCCcccccccccceeeEEeecCCCCcEEEEEec----------------CCceEEEEEEEeCCCCcEeeEEEEEecCC
Confidence            32210  0112234567765  33 5776654322                1233  445432 223321    112223


Q ss_pred             cccceEEEcCCCCEEEEEEcCCCeEEEEEeecC
Q 026118          152 YFANGVALSEDERFLVVCESWKFRCVKHFLKVS  184 (243)
Q Consensus       152 ~~~~gi~~~~dg~~l~v~~~~~~~i~~~~~~~~  184 (243)
                      ..+.|+++|....+||+++. +..||+|+.+..
T Consensus       208 sQ~EGCVVDDe~g~LYvgEE-~~GIW~y~Aep~  239 (381)
T PF02333_consen  208 SQPEGCVVDDETGRLYVGEE-DVGIWRYDAEPE  239 (381)
T ss_dssp             S-EEEEEEETTTTEEEEEET-TTEEEEEESSCC
T ss_pred             CcceEEEEecccCCEEEecC-ccEEEEEecCCC
Confidence            46789999998888999985 579999998754

1.3.8 from EC) (phytate 3-phosphatase) is a secreted enzyme which hydrolyses phytate to release inorganic phosphate. This family appears to represent a novel enzyme that shows phytase activity () and has been shown to consist of a single structural unit with a six-bladed propeller folding architecture ().; GO: 0016158 3-phytase activity; PDB: 3AMS_A 3AMR_A 1QLG_A 2POO_A 1H6L_A 1CVM_A 1POO_A.

>smart00135 LY Low-density lipoprotein-receptor YWTD domain

Probab=96.97  E-value=0.0037  Score=34.43  Aligned_cols=35  Identities=23%  Similarity=-0.027  Sum_probs=30.9

Q ss_pred             ccccccceEEEcCCCCEEEEEEcCCCeEEEEEeec
Q 026118          149 DGLYFANGVALSEDERFLVVCESWKFRCVKHFLKV  183 (243)
Q Consensus       149 ~~~~~~~gi~~~~dg~~l~v~~~~~~~i~~~~~~~  183 (243)
                      .....|+++++++.++.||+++...+.|.+.+.++
T Consensus         6 ~~~~~~~~la~d~~~~~lYw~D~~~~~I~~~~~~g   40 (43)
T smart00135        6 EGLGHPNGLAVDWIEGRLYWTDWGLDVIEVANLDG   40 (43)
T ss_pred             CCCCCcCEEEEeecCCEEEEEeCCCCEEEEEeCCC
Confidence            45678999999999999999999999999988775

Type "B" repeats in low-density lipoprotein (LDL) receptor that plays a central role in mammalian cholesterol metabolism. Also present in a variety of molecules similar to gp300/megalin.

>KOG0282 consensus mRNA splicing factor [Function unknown]

Probab=96.93  E-value=0.016  Score=48.63  Aligned_cols=150  Identities=13%  Similarity=0.090  Sum_probs=87.5

Q ss_pred             CcccEEEcCCC-cEE-EEeCCCcEEEEc-cCCcee-EecccCCccccceEEccCCCEEEEEeCCCc-EEEEe-cCCcEEE
Q 026118           11 HPEDVSVDGNG-VLY-TATGDGWIKRMH-PNGTWE-DWHQVGSQSLLGLTTTKENNVIIVCDSQQG-LLKVS-EEGVTVL   84 (243)
Q Consensus        11 ~p~~i~~d~~g-~l~-~~~~~~~i~~~~-~~g~~~-~~~~~~~~~~~~i~~~~~g~l~~v~~~~~g-l~~~~-~~g~~~~   84 (243)
                      .|.++-+-+++ +++ +|..+++|..+| ..+++. .+....+..+ .|.|-++|+. ||.+...+ +..++ ...+. +
T Consensus       301 ~~~cvkf~pd~~n~fl~G~sd~ki~~wDiRs~kvvqeYd~hLg~i~-~i~F~~~g~r-FissSDdks~riWe~~~~v~-i  377 (503)
T KOG0282|consen  301 VPTCVKFHPDNQNIFLVGGSDKKIRQWDIRSGKVVQEYDRHLGAIL-DITFVDEGRR-FISSSDDKSVRIWENRIPVP-I  377 (503)
T ss_pred             CceeeecCCCCCcEEEEecCCCcEEEEeccchHHHHHHHhhhhhee-eeEEccCCce-EeeeccCccEEEEEcCCCcc-c
Confidence            46667777766 665 555889999999 455532 2222223345 7888899998 77776554 44444 33311 1


Q ss_pred             EeccCCCcccCCccEEEcCCCcEEEEeCCCCCCcccccccccccCCCceEEEEeCCCCeeEE-----ee--ccccccceE
Q 026118           85 VSQFNGSQLRFANDVIEASDGSLYFTVSSTKFTPAEYYLDLVSGEPHGVLLKYDPSTNQTSL-----VL--DGLYFANGV  157 (243)
Q Consensus        85 ~~~~~~~~~~~~~~l~~d~~G~l~v~~~~~~~~~~~~~~~~~~~~~~g~v~~~~~~~~~~~~-----~~--~~~~~~~gi  157 (243)
                      ........+..| ++...|.+..+.+.+-                 .+.++.+... -..+.     +.  ..-..+..+
T Consensus       378 k~i~~~~~hsmP-~~~~~P~~~~~~aQs~-----------------dN~i~ifs~~-~~~r~nkkK~feGh~vaGys~~v  438 (503)
T KOG0282|consen  378 KNIADPEMHTMP-CLTLHPNGKWFAAQSM-----------------DNYIAIFSTV-PPFRLNKKKRFEGHSVAGYSCQV  438 (503)
T ss_pred             hhhcchhhccCc-ceecCCCCCeehhhcc-----------------CceEEEEecc-cccccCHhhhhcceeccCceeeE
Confidence            111111122333 7788888888877543                 2345554432 11111     11  113456789


Q ss_pred             EEcCCCCEEEEEEcCCCeEEEEEeec
Q 026118          158 ALSEDERFLVVCESWKFRCVKHFLKV  183 (243)
Q Consensus       158 ~~~~dg~~l~v~~~~~~~i~~~~~~~  183 (243)
                      .|||||++|. +....+.++.||..+
T Consensus       439 ~fSpDG~~l~-SGdsdG~v~~wdwkt  463 (503)
T KOG0282|consen  439 DFSPDGRTLC-SGDSDGKVNFWDWKT  463 (503)
T ss_pred             EEcCCCCeEE-eecCCccEEEeechh
Confidence            9999999555 445678999998764

>KOG0286 consensus G-protein beta subunit [General function prediction only]

Probab=96.92  E-value=0.15  Score=40.61  Aligned_cols=155  Identities=14%  Similarity=0.113  Sum_probs=89.7

Q ss_pred             cccCCcccEEEcCCCc-EEEEeCCCcEEEEc--cCCceeEecccCCccccceEEccCCCEEEEEeCCCc---EEEEe-c-
Q 026118            7 GIVNHPEDVSVDGNGV-LYTATGDGWIKRMH--PNGTWEDWHQVGSQSLLGLTTTKENNVIIVCDSQQG---LLKVS-E-   78 (243)
Q Consensus         7 g~~~~p~~i~~d~~g~-l~~~~~~~~i~~~~--~~g~~~~~~~~~~~~~~~i~~~~~g~l~~v~~~~~g---l~~~~-~-   78 (243)
                      |.+..-.++-+.+|.+ |..+..+|.+..+|  ...++..++.+..... ..++.|.|++ ..+..-..   ||.+. + 
T Consensus        53 GH~~Ki~~~~ws~Dsr~ivSaSqDGklIvWDs~TtnK~haipl~s~WVM-tCA~sPSg~~-VAcGGLdN~Csiy~ls~~d  130 (343)
T KOG0286|consen   53 GHLNKIYAMDWSTDSRRIVSASQDGKLIVWDSFTTNKVHAIPLPSSWVM-TCAYSPSGNF-VACGGLDNKCSIYPLSTRD  130 (343)
T ss_pred             ccccceeeeEecCCcCeEEeeccCCeEEEEEcccccceeEEecCceeEE-EEEECCCCCe-EEecCcCceeEEEeccccc
Confidence            4344444566666775 55555899999999  3445555554434444 6789999998 55543333   44444 3 


Q ss_pred             -CCcEEEEeccCCCcccCCccEEEcCCCcEEEEeCCCCCCcccccccccccCCCceEEEEeCCCCeeEEee-ccccccce
Q 026118           79 -EGVTVLVSQFNGSQLRFANDVIEASDGSLYFTVSSTKFTPAEYYLDLVSGEPHGVLLKYDPSTNQTSLVL-DGLYFANG  156 (243)
Q Consensus        79 -~g~~~~~~~~~~~~~~~~~~l~~d~~G~l~v~~~~~~~~~~~~~~~~~~~~~~g~v~~~~~~~~~~~~~~-~~~~~~~g  156 (243)
                       +|.........+. ..+..+..+-.|++|.-+ ++                 .......|.++++..... ....-..+
T Consensus       131 ~~g~~~v~r~l~gH-tgylScC~f~dD~~ilT~-SG-----------------D~TCalWDie~g~~~~~f~GH~gDV~s  191 (343)
T KOG0286|consen  131 AEGNVRVSRELAGH-TGYLSCCRFLDDNHILTG-SG-----------------DMTCALWDIETGQQTQVFHGHTGDVMS  191 (343)
T ss_pred             ccccceeeeeecCc-cceeEEEEEcCCCceEec-CC-----------------CceEEEEEcccceEEEEecCCcccEEE
Confidence             3422222222221 234555566556655543 22                 224455677667655543 33445677


Q ss_pred             EEEcC-CCCEEEEEEcCCCeEEEEEeec
Q 026118          157 VALSE-DERFLVVCESWKFRCVKHFLKV  183 (243)
Q Consensus       157 i~~~~-dg~~l~v~~~~~~~i~~~~~~~  183 (243)
                      |.++| +++ .||+..-+..-..+|...
T Consensus       192 lsl~p~~~n-tFvSg~cD~~aklWD~R~  218 (343)
T KOG0286|consen  192 LSLSPSDGN-TFVSGGCDKSAKLWDVRS  218 (343)
T ss_pred             EecCCCCCC-eEEecccccceeeeeccC
Confidence            88889 888 888876666777777754

>KOG2096 consensus WD40 repeat protein [General function prediction only]

Probab=96.90  E-value=0.14  Score=41.30  Aligned_cols=199  Identities=11%  Similarity=-0.021  Sum_probs=90.3

Q ss_pred             CCCcEEEEccCCceeEecccCCccccceEEccCCCEEEEEeCCCcEEEEe----cCC-cEEEEeccCCCc-ccCCccEEE
Q 026118           28 GDGWIKRMHPNGTWEDWHQVGSQSLLGLTTTKENNVIIVCDSQQGLLKVS----EEG-VTVLVSQFNGSQ-LRFANDVIE  101 (243)
Q Consensus        28 ~~~~i~~~~~~g~~~~~~~~~~~~~~~i~~~~~g~l~~v~~~~~gl~~~~----~~g-~~~~~~~~~~~~-~~~~~~l~~  101 (243)
                      .+..|..++..|+...........+...+++|+|+++.++.+.--+..+.    .+| ++.......... ...+..+++
T Consensus       207 ~dt~i~lw~lkGq~L~~idtnq~~n~~aavSP~GRFia~~gFTpDVkVwE~~f~kdG~fqev~rvf~LkGH~saV~~~aF  286 (420)
T KOG2096|consen  207 LDTKICLWDLKGQLLQSIDTNQSSNYDAAVSPDGRFIAVSGFTPDVKVWEPIFTKDGTFQEVKRVFSLKGHQSAVLAAAF  286 (420)
T ss_pred             CCCcEEEEecCCceeeeeccccccccceeeCCCCcEEEEecCCCCceEEEEEeccCcchhhhhhhheeccchhheeeeee
Confidence            55567777755654433221111222568899999855555443343332    456 443332222111 123344555


Q ss_pred             cCCCcEEEEeCCCC-CCcccccccccccCCCceEEEEeCCCCee----EEeeccccccceEEEcCCCCEEEEEEcCCCeE
Q 026118          102 ASDGSLYFTVSSTK-FTPAEYYLDLVSGEPHGVLLKYDPSTNQT----SLVLDGLYFANGVALSEDERFLVVCESWKFRC  176 (243)
Q Consensus       102 d~~G~l~v~~~~~~-~~~~~~~~~~~~~~~~g~v~~~~~~~~~~----~~~~~~~~~~~gi~~~~dg~~l~v~~~~~~~i  176 (243)
                      +++.+-.++.+..+ |  ..|+.+        --|..+.+...+    .++......|..++++|.|+.|-++.  ...|
T Consensus       287 sn~S~r~vtvSkDG~w--riwdtd--------VrY~~~qDpk~Lk~g~~pl~aag~~p~RL~lsP~g~~lA~s~--gs~l  354 (420)
T KOG2096|consen  287 SNSSTRAVTVSKDGKW--RIWDTD--------VRYEAGQDPKILKEGSAPLHAAGSEPVRLELSPSGDSLAVSF--GSDL  354 (420)
T ss_pred             CCCcceeEEEecCCcE--EEeecc--------ceEecCCCchHhhcCCcchhhcCCCceEEEeCCCCcEEEeec--CCce
Confidence            55554444432200 0  000000        011111111111    12222334567899999999554443  3456


Q ss_pred             EEEEeecC-CCcceEEeccCCCCCCCceEECCCCCEEEEEecCCchhhhhhhc-ChHHHHHHhhccC
Q 026118          177 VKHFLKVS-GRTDREIFIDNLPGGPDNVNLARDGSFWISIIKMDPKGIQALQS-CKERKQAVGSISR  241 (243)
Q Consensus       177 ~~~~~~~~-~~~~~~~~~~~~~~~~~~i~~d~~G~lwv~~~~~~~~~~~~~~~-~~~~~~~~~~~~~  241 (243)
                      ..|....+ .....+..   -.+-..+|+.+++|+..+...+.....+.-.-. ...++.+..-+|+
T Consensus       355 ~~~~se~g~~~~~~e~~---h~~~Is~is~~~~g~~~atcGdr~vrv~~ntpg~~~~V~~~~~~l~~  418 (420)
T KOG2096|consen  355 KVFASEDGKDYPELEDI---HSTTISSISYSSDGKYIATCGDRYVRVIRNTPGWHSRVVKLNRELPE  418 (420)
T ss_pred             EEEEcccCccchhHHHh---hcCceeeEEecCCCcEEeeecceeeeeecCCCchhhHHHHhhccccc
Confidence            66654432 11111111   122357799999998766655433322221111 2335555555555

>PF14583 Pectate_lyase22: Oligogalacturonate lyase; PDB: 3C5M_C 3PE7_A

Probab=96.88  E-value=0.13  Score=42.85  Aligned_cols=164  Identities=13%  Similarity=0.211  Sum_probs=73.5

Q ss_pred             EcCCC-cE-EEEe--CCCcEEEEc-cCCceeEecccCC-ccccceEEccCCCEEEEEeCCCcEEEEe-cCC-cEEEEecc
Q 026118           17 VDGNG-VL-YTAT--GDGWIKRMH-PNGTWEDWHQVGS-QSLLGLTTTKENNVIIVCDSQQGLLKVS-EEG-VTVLVSQF   88 (243)
Q Consensus        17 ~d~~g-~l-~~~~--~~~~i~~~~-~~g~~~~~~~~~~-~~~~~i~~~~~g~l~~v~~~~~gl~~~~-~~g-~~~~~~~~   88 (243)
                      +.++| .| |.++  ....++.+| .+++.+......+ +.. +..+.++.+.+|..-....|.+++ .+. .+.+...+
T Consensus        43 ft~dG~kllF~s~~dg~~nly~lDL~t~~i~QLTdg~g~~~~-g~~~s~~~~~~~Yv~~~~~l~~vdL~T~e~~~vy~~p  121 (386)
T PF14583_consen   43 FTDDGRKLLFASDFDGNRNLYLLDLATGEITQLTDGPGDNTF-GGFLSPDDRALYYVKNGRSLRRVDLDTLEERVVYEVP  121 (386)
T ss_dssp             B-TTS-EEEEEE-TTSS-EEEEEETTT-EEEE---SS-B-TT-T-EE-TTSSEEEEEETTTEEEEEETTT--EEEEEE--
T ss_pred             cCCCCCEEEEEeccCCCcceEEEEcccCEEEECccCCCCCcc-ceEEecCCCeEEEEECCCeEEEEECCcCcEEEEEECC
Confidence            35566 34 4444  344688888 5666666544332 234 666666666544333356899999 666 44554433


Q ss_pred             CCCcccCCccEEEcCCCcEEEEeCCC--CCCc-cccc--ccccccCCCceEEEEeCCCCeeEEeeccccccceEEEcC-C
Q 026118           89 NGSQLRFANDVIEASDGSLYFTVSST--KFTP-AEYY--LDLVSGEPHGVLLKYDPSTNQTSLVLDGLYFANGVALSE-D  162 (243)
Q Consensus        89 ~~~~~~~~~~l~~d~~G~l~v~~~~~--~~~~-~~~~--~~~~~~~~~g~v~~~~~~~~~~~~~~~~~~~~~gi~~~~-d  162 (243)
                      ....  ......+++|++.+++....  -+.. ..|.  ..........+|+.+|..+|+.+.+.....+..=+.++| |
T Consensus       122 ~~~~--g~gt~v~n~d~t~~~g~e~~~~d~~~l~~~~~f~e~~~a~p~~~i~~idl~tG~~~~v~~~~~wlgH~~fsP~d  199 (386)
T PF14583_consen  122 DDWK--GYGTWVANSDCTKLVGIEISREDWKPLTKWKGFREFYEARPHCRIFTIDLKTGERKVVFEDTDWLGHVQFSPTD  199 (386)
T ss_dssp             TTEE--EEEEEEE-TTSSEEEEEEEEGGG-----SHHHHHHHHHC---EEEEEEETTT--EEEEEEESS-EEEEEEETTE
T ss_pred             cccc--cccceeeCCCccEEEEEEEeehhccCccccHHHHHHHhhCCCceEEEEECCCCceeEEEecCccccCcccCCCC
Confidence            2211  11122345677776653110  0100 0111  122334566789999999999988866544433355555 2


Q ss_pred             CCEEEEEEcC-----CCeEEEEEeec
Q 026118          163 ERFLVVCESW-----KFRCVKHFLKV  183 (243)
Q Consensus       163 g~~l~v~~~~-----~~~i~~~~~~~  183 (243)
                      ...|-++..+     +.+||.++.++
T Consensus       200 p~li~fCHEGpw~~Vd~RiW~i~~dg  225 (386)
T PF14583_consen  200 PTLIMFCHEGPWDLVDQRIWTINTDG  225 (386)
T ss_dssp             EEEEEEEE-S-TTTSS-SEEEEETTS
T ss_pred             CCEEEEeccCCcceeceEEEEEEcCC
Confidence            2323333222     24667666554

>PTZ00420 coronin; Provisional

Probab=96.87  E-value=0.3  Score=43.41  Aligned_cols=150  Identities=12%  Similarity=-0.012  Sum_probs=83.3

Q ss_pred             cccEEEcCC-Cc-EEEEeCCCcEEEEc-cCCc--ee-------EecccCCccccceEEccCCCEEEE-EeCCCcEEEEe-
Q 026118           12 PEDVSVDGN-GV-LYTATGDGWIKRMH-PNGT--WE-------DWHQVGSQSLLGLTTTKENNVIIV-CDSQQGLLKVS-   77 (243)
Q Consensus        12 p~~i~~d~~-g~-l~~~~~~~~i~~~~-~~g~--~~-------~~~~~~~~~~~~i~~~~~g~l~~v-~~~~~gl~~~~-   77 (243)
                      ..++++.++ +. |..+..++.|..++ +.+.  ..       .+........ .++++|++..+++ +..++-+..+| 
T Consensus        77 V~~lafsP~~~~lLASgS~DgtIrIWDi~t~~~~~~~i~~p~~~L~gH~~~V~-sVaf~P~g~~iLaSgS~DgtIrIWDl  155 (568)
T PTZ00420         77 ILDLQFNPCFSEILASGSEDLTIRVWEIPHNDESVKEIKDPQCILKGHKKKIS-IIDWNPMNYYIMCSSGFDSFVNIWDI  155 (568)
T ss_pred             EEEEEEcCCCCCEEEEEeCCCeEEEEECCCCCccccccccceEEeecCCCcEE-EEEECCCCCeEEEEEeCCCeEEEEEC
Confidence            456778874 54 45556888898888 3321  11       1111112234 7899998875233 34344466677 


Q ss_pred             cCCcEEEEeccCCCcccCCccEEEcCCCcEEEEeCCCCCCcccccccccccCCCceEEEEeCCCCeeEEeeccccc-cce
Q 026118           78 EEGVTVLVSQFNGSQLRFANDVIEASDGSLYFTVSSTKFTPAEYYLDLVSGEPHGVLLKYDPSTNQTSLVLDGLYF-ANG  156 (243)
Q Consensus        78 ~~g~~~~~~~~~~~~~~~~~~l~~d~~G~l~v~~~~~~~~~~~~~~~~~~~~~~g~v~~~~~~~~~~~~~~~~~~~-~~g  156 (243)
                      .++........    ...+.++.++++|+++++...                 .+.|..+|+.+++.......... ...
T Consensus       156 ~tg~~~~~i~~----~~~V~SlswspdG~lLat~s~-----------------D~~IrIwD~Rsg~~i~tl~gH~g~~~s  214 (568)
T PTZ00420        156 ENEKRAFQINM----PKKLSSLKWNIKGNLLSGTCV-----------------GKHMHIIDPRKQEIASSFHIHDGGKNT  214 (568)
T ss_pred             CCCcEEEEEec----CCcEEEEEECCCCCEEEEEec-----------------CCEEEEEECCCCcEEEEEecccCCcee
Confidence            55521111111    134678899999998886432                 34688889987765432222111 111


Q ss_pred             E-----EEcCCCCEEEEEEcCC---CeEEEEEeec
Q 026118          157 V-----ALSEDERFLVVCESWK---FRCVKHFLKV  183 (243)
Q Consensus       157 i-----~~~~dg~~l~v~~~~~---~~i~~~~~~~  183 (243)
                      .     .++++++++..+...+   ..|..||+..
T Consensus       215 ~~v~~~~fs~d~~~IlTtG~d~~~~R~VkLWDlr~  249 (568)
T PTZ00420        215 KNIWIDGLGGDDNYILSTGFSKNNMREMKLWDLKN  249 (568)
T ss_pred             EEEEeeeEcCCCCEEEEEEcCCCCccEEEEEECCC
Confidence            1     2347887666554433   3688888763

>KOG2139 consensus WD40 repeat protein [General function prediction only]

Probab=96.82  E-value=0.055  Score=44.19  Aligned_cols=100  Identities=19%  Similarity=0.119  Sum_probs=62.0

Q ss_pred             CcccCCccEEEcCCCcEEEEeCCCCCCcccccccccccCCCceEEEEeCCCCeeEEee-ccccccceEEEcCCCCEEEEE
Q 026118           91 SQLRFANDVIEASDGSLYFTVSSTKFTPAEYYLDLVSGEPHGVLLKYDPSTNQTSLVL-DGLYFANGVALSEDERFLVVC  169 (243)
Q Consensus        91 ~~~~~~~~l~~d~~G~l~v~~~~~~~~~~~~~~~~~~~~~~g~v~~~~~~~~~~~~~~-~~~~~~~gi~~~~dg~~l~v~  169 (243)
                      +.+..+..|...+||..|++-+-                .+..+-..|++++...++. .+.....=+.++|||.+++.+
T Consensus       193 pgh~pVtsmqwn~dgt~l~tAS~----------------gsssi~iWdpdtg~~~pL~~~glgg~slLkwSPdgd~lfaA  256 (445)
T KOG2139|consen  193 PGHNPVTSMQWNEDGTILVTASF----------------GSSSIMIWDPDTGQKIPLIPKGLGGFSLLKWSPDGDVLFAA  256 (445)
T ss_pred             CCCceeeEEEEcCCCCEEeeccc----------------CcceEEEEcCCCCCcccccccCCCceeeEEEcCCCCEEEEe
Confidence            34566778888999999998532                2346777888888877765 445555568999999988887


Q ss_pred             EcCCCeEEEEEeecCCCcceEEeccCCCCCCCceEECCCCC
Q 026118          170 ESWKFRCVKHFLKVSGRTDREIFIDNLPGGPDNVNLARDGS  210 (243)
Q Consensus       170 ~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~i~~d~~G~  210 (243)
                      .. +.....+..+...  ..+.+. ...++.-+-+.++.|+
T Consensus       257 t~-davfrlw~e~q~w--t~erw~-lgsgrvqtacWspcGs  293 (445)
T KOG2139|consen  257 TC-DAVFRLWQENQSW--TKERWI-LGSGRVQTACWSPCGS  293 (445)
T ss_pred             cc-cceeeeehhcccc--eeccee-ccCCceeeeeecCCCC
Confidence            54 2322223222211  112222 2234556667788887

>KOG2139 consensus WD40 repeat protein [General function prediction only]

Probab=96.75  E-value=0.24  Score=40.61  Aligned_cols=149  Identities=12%  Similarity=0.098  Sum_probs=89.1

Q ss_pred             CccccceEEccCCCEEEEEe-CC-CcEEEEe-cCC-cEEEEeccCCCcccCCccEEEcCCCcEEEEeCCCCCCccccccc
Q 026118           49 SQSLLGLTTTKENNVIIVCD-SQ-QGLLKVS-EEG-VTVLVSQFNGSQLRFANDVIEASDGSLYFTVSSTKFTPAEYYLD  124 (243)
Q Consensus        49 ~~~~~~i~~~~~g~l~~v~~-~~-~gl~~~~-~~g-~~~~~~~~~~~~~~~~~~l~~d~~G~l~v~~~~~~~~~~~~~~~  124 (243)
                      ..+...|.-.+||.. |+.. .+ ..+..++ .+| ..++..  .  ......-+..+|||..+++..            
T Consensus       195 h~pVtsmqwn~dgt~-l~tAS~gsssi~iWdpdtg~~~pL~~--~--glgg~slLkwSPdgd~lfaAt------------  257 (445)
T KOG2139|consen  195 HNPVTSMQWNEDGTI-LVTASFGSSSIMIWDPDTGQKIPLIP--K--GLGGFSLLKWSPDGDVLFAAT------------  257 (445)
T ss_pred             CceeeEEEEcCCCCE-EeecccCcceEEEEcCCCCCcccccc--c--CCCceeeEEEcCCCCEEEEec------------
Confidence            455557888899988 4443 33 3577777 566 444431  1  112333468899999777632            


Q ss_pred             ccccCCCceEEEEeCCCCeeE--EeeccccccceEEEcCCCCEEEEEEcCCCeEEEEEeecCC--Cc------ceEEecc
Q 026118          125 LVSGEPHGVLLKYDPSTNQTS--LVLDGLYFANGVALSEDERFLVVCESWKFRCVKHFLKVSG--RT------DREIFID  194 (243)
Q Consensus       125 ~~~~~~~g~v~~~~~~~~~~~--~~~~~~~~~~gi~~~~dg~~l~v~~~~~~~i~~~~~~~~~--~~------~~~~~~~  194 (243)
                            -.+++++-..+....  +-.-+....++..++|.|+.|.++-.....|++....+..  ..      ......+
T Consensus       258 ------~davfrlw~e~q~wt~erw~lgsgrvqtacWspcGsfLLf~~sgsp~lysl~f~~~~~~~~~~~~~k~~lliaD  331 (445)
T KOG2139|consen  258 ------CDAVFRLWQENQSWTKERWILGSGRVQTACWSPCGSFLLFACSGSPRLYSLTFDGEDSVFLRPQSIKRVLLIAD  331 (445)
T ss_pred             ------ccceeeeehhcccceecceeccCCceeeeeecCCCCEEEEEEcCCceEEEEeecCCCccccCcccceeeeeecc
Confidence                  124555543323322  2223344778889999999999888888888888776421  11      1111111


Q ss_pred             --------C---CCCCCCceEECCCCCEEEEEecCCc
Q 026118          195 --------N---LPGGPDNVNLARDGSFWISIIKMDP  220 (243)
Q Consensus       195 --------~---~~~~~~~i~~d~~G~lwv~~~~~~~  220 (243)
                              +   ..+.+..|+.|+.|+-.+....+.+
T Consensus       332 L~e~ti~ag~~l~cgeaq~lawDpsGeyLav~fKg~~  368 (445)
T KOG2139|consen  332 LQEVTICAGQRLCCGEAQCLAWDPSGEYLAVIFKGQS  368 (445)
T ss_pred             chhhhhhcCcccccCccceeeECCCCCEEEEEEcCCc
Confidence                    0   1234667999999986666766655

>KOG0273 consensus Beta-transducin family (WD-40 repeat) protein [Chromatin structure and dynamics]

Probab=96.72  E-value=0.16  Score=42.90  Aligned_cols=145  Identities=12%  Similarity=0.042  Sum_probs=81.3

Q ss_pred             cccEEEcCCCcEE-EEeCCCcEEEEccCCceeE-ecccCCccccceEEccCCCEEEEEeCCCcEEEEe-cCC-cEEEEec
Q 026118           12 PEDVSVDGNGVLY-TATGDGWIKRMHPNGTWED-WHQVGSQSLLGLTTTKENNVIIVCDSQQGLLKVS-EEG-VTVLVSQ   87 (243)
Q Consensus        12 p~~i~~d~~g~l~-~~~~~~~i~~~~~~g~~~~-~~~~~~~~~~~i~~~~~g~l~~v~~~~~gl~~~~-~~g-~~~~~~~   87 (243)
                      --++++..+|.+. .+..+|.+..++.+|.... +... ..|...+.-..+|+++..+..++-+..+| .+| .++...-
T Consensus       238 VT~L~Wn~~G~~LatG~~~G~~riw~~~G~l~~tl~~H-kgPI~slKWnk~G~yilS~~vD~ttilwd~~~g~~~q~f~~  316 (524)
T KOG0273|consen  238 VTSLDWNNDGTLLATGSEDGEARIWNKDGNLISTLGQH-KGPIFSLKWNKKGTYILSGGVDGTTILWDAHTGTVKQQFEF  316 (524)
T ss_pred             cceEEecCCCCeEEEeecCcEEEEEecCchhhhhhhcc-CCceEEEEEcCCCCEEEeccCCccEEEEeccCceEEEeeee
Confidence            4467888889766 4558888888887775433 2221 23444788889998844444444577788 677 5543321


Q ss_pred             cCCCcccCCccEEEcCCCc-EEEEeCCCCCCcccccccccccCCCceEEEEeCCCCeeEEeeccccccceEEEcCCCCEE
Q 026118           88 FNGSQLRFANDVIEASDGS-LYFTVSSTKFTPAEYYLDLVSGEPHGVLLKYDPSTNQTSLVLDGLYFANGVALSEDERFL  166 (243)
Q Consensus        88 ~~~~~~~~~~~l~~d~~G~-l~v~~~~~~~~~~~~~~~~~~~~~~g~v~~~~~~~~~~~~~~~~~~~~~gi~~~~dg~~l  166 (243)
                      -     ..+ ++.++-.++ -|++.+.               ...-.||+++.+ +-...+.......+.|.++|.|. |
T Consensus       317 ~-----s~~-~lDVdW~~~~~F~ts~t---------------d~~i~V~kv~~~-~P~~t~~GH~g~V~alk~n~tg~-L  373 (524)
T KOG0273|consen  317 H-----SAP-ALDVDWQSNDEFATSST---------------DGCIHVCKVGED-RPVKTFIGHHGEVNALKWNPTGS-L  373 (524)
T ss_pred             c-----cCC-ccceEEecCceEeecCC---------------CceEEEEEecCC-CcceeeecccCceEEEEECCCCc-e
Confidence            1     112 222222121 2222111               112356777766 33444555556678899999998 5


Q ss_pred             EEEEcCCCeEEEEE
Q 026118          167 VVCESWKFRCVKHF  180 (243)
Q Consensus       167 ~v~~~~~~~i~~~~  180 (243)
                      ..+-..+..+-.+.
T Consensus       374 LaS~SdD~TlkiWs  387 (524)
T KOG0273|consen  374 LASCSDDGTLKIWS  387 (524)
T ss_pred             EEEecCCCeeEeee
Confidence            55544555554444

>PRK13684 Ycf48-like protein; Provisional

Probab=96.69  E-value=0.28  Score=40.60  Aligned_cols=174  Identities=15%  Similarity=0.098  Sum_probs=86.5

Q ss_pred             EEEcCCCcEEEEeCCCcEEEEccCC-ceeEecccC-CccccceEEccCCCEEEEEeCCCcEEEEecCC---cEEEEeccC
Q 026118           15 VSVDGNGVLYTATGDGWIKRMHPNG-TWEDWHQVG-SQSLLGLTTTKENNVIIVCDSQQGLLKVSEEG---VTVLVSQFN   89 (243)
Q Consensus        15 i~~d~~g~l~~~~~~~~i~~~~~~g-~~~~~~~~~-~~~~~~i~~~~~g~l~~v~~~~~gl~~~~~~g---~~~~~~~~~   89 (243)
                      +....++.+|+....+.|++-...| ++....... .... ++.+++++.+ +++...+.+++-..++   ...+..   
T Consensus       137 i~~~~~~~~~~~g~~G~i~~S~DgG~tW~~~~~~~~g~~~-~i~~~~~g~~-v~~g~~G~i~~s~~~gg~tW~~~~~---  211 (334)
T PRK13684        137 ITALGPGTAEMATNVGAIYRTTDGGKNWEALVEDAAGVVR-NLRRSPDGKY-VAVSSRGNFYSTWEPGQTAWTPHQR---  211 (334)
T ss_pred             EEEECCCcceeeeccceEEEECCCCCCceeCcCCCcceEE-EEEECCCCeE-EEEeCCceEEEEcCCCCCeEEEeeC---
Confidence            4333445566666667777776444 455443322 2223 7788888766 5544333344432333   333221   


Q ss_pred             CCcccCCccEEEcCCCcEEEEeCCCCCCcccccccccccCCCceEEEE-eCCCC-eeEEeecc----ccccceEEEcCCC
Q 026118           90 GSQLRFANDVIEASDGSLYFTVSSTKFTPAEYYLDLVSGEPHGVLLKY-DPSTN-QTSLVLDG----LYFANGVALSEDE  163 (243)
Q Consensus        90 ~~~~~~~~~l~~d~~G~l~v~~~~~~~~~~~~~~~~~~~~~~g~v~~~-~~~~~-~~~~~~~~----~~~~~gi~~~~dg  163 (243)
                       .....+.++++.++|++|+....                   +..++ ..+.| .++.....    .....++++.+++
T Consensus       212 -~~~~~l~~i~~~~~g~~~~vg~~-------------------G~~~~~s~d~G~sW~~~~~~~~~~~~~l~~v~~~~~~  271 (334)
T PRK13684        212 -NSSRRLQSMGFQPDGNLWMLARG-------------------GQIRFNDPDDLESWSKPIIPEITNGYGYLDLAYRTPG  271 (334)
T ss_pred             -CCcccceeeeEcCCCCEEEEecC-------------------CEEEEccCCCCCccccccCCccccccceeeEEEcCCC
Confidence             12245678888899999987322                   33344 34434 33322111    1234567888887


Q ss_pred             CEEEEEEcCCCeEEEEEeecCCCcceEEec--cCCCCCCCceEECCCCCEEEEEecC
Q 026118          164 RFLVVCESWKFRCVKHFLKVSGRTDREIFI--DNLPGGPDNVNLARDGSFWISIIKM  218 (243)
Q Consensus       164 ~~l~v~~~~~~~i~~~~~~~~~~~~~~~~~--~~~~~~~~~i~~d~~G~lwv~~~~~  218 (243)
                      + +|++.. .+.|++ ..+++  .+++...  ...+.....+.+..+++.|+....|
T Consensus       272 ~-~~~~G~-~G~v~~-S~d~G--~tW~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~G  323 (334)
T PRK13684        272 E-IWAGGG-NGTLLV-SKDGG--KTWEKDPVGEEVPSNFYKIVFLDPEKGFVLGQRG  323 (334)
T ss_pred             C-EEEEcC-CCeEEE-eCCCC--CCCeECCcCCCCCcceEEEEEeCCCceEEECCCc
Confidence            7 887754 455554 22321  2222221  1111112235555566777765544

>PRK13684 Ycf48-like protein; Provisional

Probab=96.65  E-value=0.3  Score=40.48  Aligned_cols=146  Identities=10%  Similarity=0.075  Sum_probs=78.4

Q ss_pred             ccEEEcCCCcEEEEeCCCcEEEEc-cCC-ceeEecccCCccccceEEccCCCEEEEEeCCCcEEEEe--cCC--cEEEEe
Q 026118           13 EDVSVDGNGVLYTATGDGWIKRMH-PNG-TWEDWHQVGSQSLLGLTTTKENNVIIVCDSQQGLLKVS--EEG--VTVLVS   86 (243)
Q Consensus        13 ~~i~~d~~g~l~~~~~~~~i~~~~-~~g-~~~~~~~~~~~~~~~i~~~~~g~l~~v~~~~~gl~~~~--~~g--~~~~~~   86 (243)
                      .++..++++.+++....|.+++.. ..+ ++............++++.+++++ |++.. .|.+++.  ..|  .+.+..
T Consensus       176 ~~i~~~~~g~~v~~g~~G~i~~s~~~gg~tW~~~~~~~~~~l~~i~~~~~g~~-~~vg~-~G~~~~~s~d~G~sW~~~~~  253 (334)
T PRK13684        176 RNLRRSPDGKYVAVSSRGNFYSTWEPGQTAWTPHQRNSSRRLQSMGFQPDGNL-WMLAR-GGQIRFNDPDDLESWSKPII  253 (334)
T ss_pred             EEEEECCCCeEEEEeCCceEEEEcCCCCCeEEEeeCCCcccceeeeEcCCCCE-EEEec-CCEEEEccCCCCCccccccC
Confidence            356666777666555666676653 233 355544332333337888888998 77764 5666663  344  332211


Q ss_pred             ccCCCcccCCccEEEcCCCcEEEEeCCCCCCcccccccccccCCCceEEEEeCCCCeeEEee--ccc-cccceEEEcCCC
Q 026118           87 QFNGSQLRFANDVIEASDGSLYFTVSSTKFTPAEYYLDLVSGEPHGVLLKYDPSTNQTSLVL--DGL-YFANGVALSEDE  163 (243)
Q Consensus        87 ~~~~~~~~~~~~l~~d~~G~l~v~~~~~~~~~~~~~~~~~~~~~~g~v~~~~~~~~~~~~~~--~~~-~~~~gi~~~~dg  163 (243)
                       +.........++++.+++++|++..                  .|.+++-...+.+++...  ... ..-+.+.+..++
T Consensus       254 -~~~~~~~~l~~v~~~~~~~~~~~G~------------------~G~v~~S~d~G~tW~~~~~~~~~~~~~~~~~~~~~~  314 (334)
T PRK13684        254 -PEITNGYGYLDLAYRTPGEIWAGGG------------------NGTLLVSKDGGKTWEKDPVGEEVPSNFYKIVFLDPE  314 (334)
T ss_pred             -CccccccceeeEEEcCCCCEEEEcC------------------CCeEEEeCCCCCCCeECCcCCCCCcceEEEEEeCCC
Confidence             1111112345678888889998732                  245655333323444432  111 123456666566


Q ss_pred             CEEEEEEcCCCeEEEEEe
Q 026118          164 RFLVVCESWKFRCVKHFL  181 (243)
Q Consensus       164 ~~l~v~~~~~~~i~~~~~  181 (243)
                      + .|+.. ..+.|.+++.
T Consensus       315 ~-~~~~G-~~G~il~~~~  330 (334)
T PRK13684        315 K-GFVLG-QRGVLLRYVG  330 (334)
T ss_pred             c-eEEEC-CCceEEEecC
Confidence            5 66664 3577887764

>KOG2919 consensus Guanine nucleotide-binding protein [General function prediction only]

Probab=96.64  E-value=0.091  Score=42.34  Aligned_cols=145  Identities=10%  Similarity=0.022  Sum_probs=82.9

Q ss_pred             CCCcEEEEe-CCCcEEEEc-cCCceeE-eccc-----CCccccceEEccCCCEEEEEeCCCcEEEEe--cCC--cEEEEe
Q 026118           19 GNGVLYTAT-GDGWIKRMH-PNGTWED-WHQV-----GSQSLLGLTTTKENNVIIVCDSQQGLLKVS--EEG--VTVLVS   86 (243)
Q Consensus        19 ~~g~l~~~~-~~~~i~~~~-~~g~~~~-~~~~-----~~~~~~~i~~~~~g~l~~v~~~~~gl~~~~--~~g--~~~~~~   86 (243)
                      |+-.||.++ .+.-|..+| .+|+.+- +...     -.... ++.|++||.. .++....-|..|+  +.|  ..+...
T Consensus       121 P~t~l~a~ssr~~PIh~wdaftG~lraSy~~ydh~de~taAh-sL~Fs~DGeq-lfaGykrcirvFdt~RpGr~c~vy~t  198 (406)
T KOG2919|consen  121 PSTNLFAVSSRDQPIHLWDAFTGKLRASYRAYDHQDEYTAAH-SLQFSPDGEQ-LFAGYKRCIRVFDTSRPGRDCPVYTT  198 (406)
T ss_pred             CccceeeeccccCceeeeeccccccccchhhhhhHHhhhhhe-eEEecCCCCe-EeecccceEEEeeccCCCCCCcchhh
Confidence            455666555 556677887 4665432 1111     11235 7899999998 5555556677787  445  333332


Q ss_pred             ccCCC--cccCCccEEEcCCC--cEEEEeCCCCCCcccccccccccCCCceEEEEeCCCCeeEEee-ccccccceEEEcC
Q 026118           87 QFNGS--QLRFANDVIEASDG--SLYFTVSSTKFTPAEYYLDLVSGEPHGVLLKYDPSTNQTSLVL-DGLYFANGVALSE  161 (243)
Q Consensus        87 ~~~~~--~~~~~~~l~~d~~G--~l~v~~~~~~~~~~~~~~~~~~~~~~g~v~~~~~~~~~~~~~~-~~~~~~~gi~~~~  161 (243)
                      ...+.  ....+.++++.|-.  .+-++..+                .+-+||+-+.  +++-.+. .......-+.+.+
T Consensus       199 ~~~~k~gq~giisc~a~sP~~~~~~a~gsY~----------------q~~giy~~~~--~~pl~llggh~gGvThL~~~e  260 (406)
T KOG2919|consen  199 VTKGKFGQKGIISCFAFSPMDSKTLAVGSYG----------------QRVGIYNDDG--RRPLQLLGGHGGGVTHLQWCE  260 (406)
T ss_pred             hhcccccccceeeeeeccCCCCcceeeeccc----------------ceeeeEecCC--CCceeeecccCCCeeeEEecc
Confidence            22111  12344566777732  33344222                1224555443  4443333 3344566689999


Q ss_pred             CCCEEEEEEcCCCeEEEEEeec
Q 026118          162 DERFLVVCESWKFRCVKHFLKV  183 (243)
Q Consensus       162 dg~~l~v~~~~~~~i~~~~~~~  183 (243)
                      +|+.||........|..+|+..
T Consensus       261 dGn~lfsGaRk~dkIl~WDiR~  282 (406)
T KOG2919|consen  261 DGNKLFSGARKDDKILCWDIRY  282 (406)
T ss_pred             CcCeecccccCCCeEEEEeehh
Confidence            9999999887788999999753

>KOG1539 consensus WD repeat protein [General function prediction only]

Probab=96.62  E-value=0.061  Score=48.33  Aligned_cols=145  Identities=16%  Similarity=0.125  Sum_probs=87.0

Q ss_pred             ccEEEcCCCcEEEEe-CCCcEEEEccCCce-eEecccCCccccceEEccCCCEEEEEeCCCcEEEEe-cCC--cEEEEec
Q 026118           13 EDVSVDGNGVLYTAT-GDGWIKRMHPNGTW-EDWHQVGSQSLLGLTTTKENNVIIVCDSQQGLLKVS-EEG--VTVLVSQ   87 (243)
Q Consensus        13 ~~i~~d~~g~l~~~~-~~~~i~~~~~~g~~-~~~~~~~~~~~~~i~~~~~g~l~~v~~~~~gl~~~~-~~g--~~~~~~~   87 (243)
                      .+++.|.-+++.++. .+|-+-.++..++. ..-......+. +|.....-.++.++.....|..+| .+.  ++.+   
T Consensus       497 ~gla~D~~n~~~vsa~~~Gilkfw~f~~k~l~~~l~l~~~~~-~iv~hr~s~l~a~~~ddf~I~vvD~~t~kvvR~f---  572 (910)
T KOG1539|consen  497 TGLAVDGTNRLLVSAGADGILKFWDFKKKVLKKSLRLGSSIT-GIVYHRVSDLLAIALDDFSIRVVDVVTRKVVREF---  572 (910)
T ss_pred             eEEEecCCCceEEEccCcceEEEEecCCcceeeeeccCCCcc-eeeeeehhhhhhhhcCceeEEEEEchhhhhhHHh---
Confidence            468888777766665 55555566644333 21111112223 565555444434444455788887 443  3322   


Q ss_pred             cCCCcccCCccEEEcCCCcEEEEeCCCCCCcccccccccccCCCceEEEEeCCCCeeEEeeccccccceEEEcCCCCEEE
Q 026118           88 FNGSQLRFANDVIEASDGSLYFTVSSTKFTPAEYYLDLVSGEPHGVLLKYDPSTNQTSLVLDGLYFANGVALSEDERFLV  167 (243)
Q Consensus        88 ~~~~~~~~~~~l~~d~~G~l~v~~~~~~~~~~~~~~~~~~~~~~g~v~~~~~~~~~~~~~~~~~~~~~gi~~~~dg~~l~  167 (243)
                       .+. .+.+++++++|||+-.++-+                 ..+.|-.+|.-++.+.-...-..-+..+.++|.|++|-
T Consensus       573 -~gh-~nritd~~FS~DgrWlisas-----------------mD~tIr~wDlpt~~lID~~~vd~~~~sls~SPngD~LA  633 (910)
T KOG1539|consen  573 -WGH-GNRITDMTFSPDGRWLISAS-----------------MDSTIRTWDLPTGTLIDGLLVDSPCTSLSFSPNGDFLA  633 (910)
T ss_pred             -hcc-ccceeeeEeCCCCcEEEEee-----------------cCCcEEEEeccCcceeeeEecCCcceeeEECCCCCEEE
Confidence             221 24678999999998555421                 23567778888776543322223456799999999888


Q ss_pred             EEEcCCCeEEEEE
Q 026118          168 VCESWKFRCVKHF  180 (243)
Q Consensus       168 v~~~~~~~i~~~~  180 (243)
                      .+....+.|+.+.
T Consensus       634 T~Hvd~~gIylWs  646 (910)
T KOG1539|consen  634 TVHVDQNGIYLWS  646 (910)
T ss_pred             EEEecCceEEEEE
Confidence            8877777888875

>KOG0645 consensus WD40 repeat protein [General function prediction only]

Probab=96.62  E-value=0.24  Score=38.96  Aligned_cols=154  Identities=12%  Similarity=0.116  Sum_probs=91.6

Q ss_pred             CCcccEEEcCC-CcEEEE-eCCCcEEEEccC-C-ceeEe--cc-cCCccccceEEccCCCEEEEEeCCCcEEEEe-cCC-
Q 026118           10 NHPEDVSVDGN-GVLYTA-TGDGWIKRMHPN-G-TWEDW--HQ-VGSQSLLGLTTTKENNVIIVCDSQQGLLKVS-EEG-   80 (243)
Q Consensus        10 ~~p~~i~~d~~-g~l~~~-~~~~~i~~~~~~-g-~~~~~--~~-~~~~~~~~i~~~~~g~l~~v~~~~~gl~~~~-~~g-   80 (243)
                      .+-.++++.+. |+++.+ ..+..|..++.. + .+.-.  .. ..-+....++.+|.|++|..+.+..-+..+. .++ 
T Consensus        15 ~r~W~~awhp~~g~ilAscg~Dk~vriw~~~~~~s~~ck~vld~~hkrsVRsvAwsp~g~~La~aSFD~t~~Iw~k~~~e   94 (312)
T KOG0645|consen   15 DRVWSVAWHPGKGVILASCGTDKAVRIWSTSSGDSWTCKTVLDDGHKRSVRSVAWSPHGRYLASASFDATVVIWKKEDGE   94 (312)
T ss_pred             CcEEEEEeccCCceEEEeecCCceEEEEecCCCCcEEEEEeccccchheeeeeeecCCCcEEEEeeccceEEEeecCCCc
Confidence            34667888875 775544 466777777643 2 12111  11 0112233789999999866666544444444 344 


Q ss_pred             cEEEEeccCCCcccCCccEEEcCCCcEEEEeCCCCCCcccccccccccCCCceEEEEeCCCCeeEEe---eccccccceE
Q 026118           81 VTVLVSQFNGSQLRFANDVIEASDGSLYFTVSSTKFTPAEYYLDLVSGEPHGVLLKYDPSTNQTSLV---LDGLYFANGV  157 (243)
Q Consensus        81 ~~~~~~~~~~~~~~~~~~l~~d~~G~l~v~~~~~~~~~~~~~~~~~~~~~~g~v~~~~~~~~~~~~~---~~~~~~~~gi  157 (243)
                      ++-+. ..++.. +.+-+++.+++|++..+-+.               ..+--|+.++.+ .+++-.   .+..+-...+
T Consensus        95 fecv~-~lEGHE-nEVK~Vaws~sG~~LATCSR---------------DKSVWiWe~ded-dEfec~aVL~~HtqDVK~V  156 (312)
T KOG0645|consen   95 FECVA-TLEGHE-NEVKCVAWSASGNYLATCSR---------------DKSVWIWEIDED-DEFECIAVLQEHTQDVKHV  156 (312)
T ss_pred             eeEEe-eeeccc-cceeEEEEcCCCCEEEEeeC---------------CCeEEEEEecCC-CcEEEEeeeccccccccEE
Confidence            55433 244432 45668999999998887543               122235566644 555432   2334445678


Q ss_pred             EEcCCCCEEEEEEcCCCeEEEEEee
Q 026118          158 ALSEDERFLVVCESWKFRCVKHFLK  182 (243)
Q Consensus       158 ~~~~dg~~l~v~~~~~~~i~~~~~~  182 (243)
                      .++|... |.++-..+++|-.|+-.
T Consensus       157 ~WHPt~d-lL~S~SYDnTIk~~~~~  180 (312)
T KOG0645|consen  157 IWHPTED-LLFSCSYDNTIKVYRDE  180 (312)
T ss_pred             EEcCCcc-eeEEeccCCeEEEEeec
Confidence            9999777 77777788888887655

>COG3823 Glutamine cyclotransferase [Posttranslational modification, protein turnover, chaperones]

Probab=96.60  E-value=0.15  Score=38.74  Aligned_cols=98  Identities=18%  Similarity=0.283  Sum_probs=58.9

Q ss_pred             CccccceEEccCCCEEEEEeCCCcEEEEecCC---cEEEEeccCCCcccCCccEEEcCCCc----EEEEeCCCCCCcccc
Q 026118           49 SQSLLGLTTTKENNVIIVCDSQQGLLKVSEEG---VTVLVSQFNGSQLRFANDVIEASDGS----LYFTVSSTKFTPAEY  121 (243)
Q Consensus        49 ~~~~~~i~~~~~g~l~~v~~~~~gl~~~~~~g---~~~~~~~~~~~~~~~~~~l~~d~~G~----l~v~~~~~~~~~~~~  121 (243)
                      +.-. |++.|.+ ++ |.++...-+...|+.-   ...+....++.+....|.+..- ||.    +|.+           
T Consensus       131 GeGW-gLt~d~~-~L-imsdGsatL~frdP~tfa~~~~v~VT~~g~pv~~LNELE~V-dG~lyANVw~t-----------  195 (262)
T COG3823         131 GEGW-GLTSDDK-NL-IMSDGSATLQFRDPKTFAELDTVQVTDDGVPVSKLNELEWV-DGELYANVWQT-----------  195 (262)
T ss_pred             Ccce-eeecCCc-ce-EeeCCceEEEecCHHHhhhcceEEEEECCeecccccceeee-ccEEEEeeeee-----------
Confidence            3445 7776544 45 8877544455555432   2233334555555555555332 454    4554           


Q ss_pred             cccccccCCCceEEEEeCCCCeeEEeec-------------cccccceEEEcCCCCEEEEEEc
Q 026118          122 YLDLVSGEPHGVLLKYDPSTNQTSLVLD-------------GLYFANGVALSEDERFLVVCES  171 (243)
Q Consensus       122 ~~~~~~~~~~g~v~~~~~~~~~~~~~~~-------------~~~~~~gi~~~~dg~~l~v~~~  171 (243)
                                ..|.|++|++|++....+             .....||||.+++++.+|++.-
T Consensus       196 ----------~~I~rI~p~sGrV~~widlS~L~~~~~~~~~~~nvlNGIA~~~~~~r~~iTGK  248 (262)
T COG3823         196 ----------TRIARIDPDSGRVVAWIDLSGLLKELNLDKSNDNVLNGIAHDPQQDRFLITGK  248 (262)
T ss_pred             ----------cceEEEcCCCCcEEEEEEccCCchhcCccccccccccceeecCcCCeEEEecC
Confidence                      379999999998765321             1235789999999977998853

>KOG0271 consensus Notchless-like WD40 repeat-containing protein [Function unknown]

Probab=96.59  E-value=0.048  Score=44.81  Aligned_cols=108  Identities=15%  Similarity=0.089  Sum_probs=67.5

Q ss_pred             ceEEccCCCEEEEEeCCCcEEE-Ee-cCCcEEEEeccCCCcccCCccEEEcCCCcEEEEeCCCCCCcccccccccccCCC
Q 026118           54 GLTTTKENNVIIVCDSQQGLLK-VS-EEGVTVLVSQFNGSQLRFANDVIEASDGSLYFTVSSTKFTPAEYYLDLVSGEPH  131 (243)
Q Consensus        54 ~i~~~~~g~l~~v~~~~~gl~~-~~-~~g~~~~~~~~~~~~~~~~~~l~~d~~G~l~v~~~~~~~~~~~~~~~~~~~~~~  131 (243)
                      ++.|+|+|.. .+...+...++ +| .+. +++..  -....+.+.+++.+|||....+.                 ...
T Consensus       120 ~~~fsp~g~~-l~tGsGD~TvR~WD~~Te-Tp~~t--~KgH~~WVlcvawsPDgk~iASG-----------------~~d  178 (480)
T KOG0271|consen  120 SVQFSPTGSR-LVTGSGDTTVRLWDLDTE-TPLFT--CKGHKNWVLCVAWSPDGKKIASG-----------------SKD  178 (480)
T ss_pred             EEEecCCCce-EEecCCCceEEeeccCCC-Cccee--ecCCccEEEEEEECCCcchhhcc-----------------ccC
Confidence            7889999988 44443444444 44 333 12111  11123567789999999877762                 356


Q ss_pred             ceEEEEeCCCCeeE--EeeccccccceEEEcC-----CCCEEEEEEcCCCeEEEEEeec
Q 026118          132 GVLLKYDPSTNQTS--LVLDGLYFANGVALSE-----DERFLVVCESWKFRCVKHFLKV  183 (243)
Q Consensus       132 g~v~~~~~~~~~~~--~~~~~~~~~~gi~~~~-----dg~~l~v~~~~~~~i~~~~~~~  183 (243)
                      |.|..+||++|+..  .+.....+.++|+|.|     ..+ .+.+...++.+..+|...
T Consensus       179 g~I~lwdpktg~~~g~~l~gH~K~It~Lawep~hl~p~~r-~las~skDg~vrIWd~~~  236 (480)
T KOG0271|consen  179 GSIRLWDPKTGQQIGRALRGHKKWITALAWEPLHLVPPCR-RLASSSKDGSVRIWDTKL  236 (480)
T ss_pred             CeEEEecCCCCCcccccccCcccceeEEeecccccCCCcc-ceecccCCCCEEEEEccC
Confidence            78999999987643  2333345566777654     455 556666778888888654

>KOG0640 consensus mRNA cleavage stimulating factor complex; subunit 1 [RNA processing and modification]

Probab=96.55  E-value=0.049  Score=43.57  Aligned_cols=147  Identities=12%  Similarity=0.177  Sum_probs=83.9

Q ss_pred             ccEEEcCCCcEEEEe-CCCcEEEEccCC-----ceeEecccCCccccceEEccCCCEEEEEeCCCc-EEEEe-cCCcEEE
Q 026118           13 EDVSVDGNGVLYTAT-GDGWIKRMHPNG-----TWEDWHQVGSQSLLGLTTTKENNVIIVCDSQQG-LLKVS-EEGVTVL   84 (243)
Q Consensus        13 ~~i~~d~~g~l~~~~-~~~~i~~~~~~g-----~~~~~~~~~~~~~~~i~~~~~g~l~~v~~~~~g-l~~~~-~~g~~~~   84 (243)
                      ..+.+-|...|.++. .++.|-.+|-.+     .++.+..  -.|..+|.|.|.|.++.+++ ..- +..+| .+- .-+
T Consensus       176 n~l~FHPre~ILiS~srD~tvKlFDfsK~saKrA~K~~qd--~~~vrsiSfHPsGefllvgT-dHp~~rlYdv~T~-Qcf  251 (430)
T KOG0640|consen  176 NDLDFHPRETILISGSRDNTVKLFDFSKTSAKRAFKVFQD--TEPVRSISFHPSGEFLLVGT-DHPTLRLYDVNTY-QCF  251 (430)
T ss_pred             cceeecchhheEEeccCCCeEEEEecccHHHHHHHHHhhc--cceeeeEeecCCCceEEEec-CCCceeEEeccce-eEe
Confidence            346666766666555 667776666211     2222222  33444899999999967766 444 34444 322 112


Q ss_pred             -EeccCCCcccCCccEEEcCCCcEEEEeCCCCCCcccccccccccCCCceEEEEeCCCCeeE-Ee--eccccccceEEEc
Q 026118           85 -VSQFNGSQLRFANDVIEASDGSLYFTVSSTKFTPAEYYLDLVSGEPHGVLLKYDPSTNQTS-LV--LDGLYFANGVALS  160 (243)
Q Consensus        85 -~~~~~~~~~~~~~~l~~d~~G~l~v~~~~~~~~~~~~~~~~~~~~~~g~v~~~~~~~~~~~-~~--~~~~~~~~gi~~~  160 (243)
                       ...++.+....+.++..++.|++|++-+.                 .|.|-.+|.-+++-. .+  +.+.....+..|.
T Consensus       252 vsanPd~qht~ai~~V~Ys~t~~lYvTaSk-----------------DG~IklwDGVS~rCv~t~~~AH~gsevcSa~Ft  314 (430)
T KOG0640|consen  252 VSANPDDQHTGAITQVRYSSTGSLYVTASK-----------------DGAIKLWDGVSNRCVRTIGNAHGGSEVCSAVFT  314 (430)
T ss_pred             eecCcccccccceeEEEecCCccEEEEecc-----------------CCcEEeeccccHHHHHHHHhhcCCceeeeEEEc
Confidence             12233333456778889999999999543                 455666665433321 11  3344556778999


Q ss_pred             CCCCEEEEEEcCCCeEEEEEe
Q 026118          161 EDERFLVVCESWKFRCVKHFL  181 (243)
Q Consensus       161 ~dg~~l~v~~~~~~~i~~~~~  181 (243)
                      .+|+++.-+.. +..+..+.+
T Consensus       315 kn~kyiLsSG~-DS~vkLWEi  334 (430)
T KOG0640|consen  315 KNGKYILSSGK-DSTVKLWEI  334 (430)
T ss_pred             cCCeEEeecCC-cceeeeeee
Confidence            99986665533 333444444

>PF05694 SBP56: 56kDa selenium binding protein (SBP56); InterPro: IPR008826 This family consists of several eukaryotic selenium binding proteins as well as three sequences from archaea

Probab=96.44  E-value=0.32  Score=41.20  Aligned_cols=64  Identities=23%  Similarity=0.377  Sum_probs=35.4

Q ss_pred             ccceEEEcCCCCEEEEEEcCCCeEEEEEeecCCCcce--EEecc--------------CCCCCCCceEECCCCC-EEEEE
Q 026118          153 FANGVALSEDERFLVVCESWKFRCVKHFLKVSGRTDR--EIFID--------------NLPGGPDNVNLARDGS-FWISI  215 (243)
Q Consensus       153 ~~~gi~~~~dg~~l~v~~~~~~~i~~~~~~~~~~~~~--~~~~~--------------~~~~~~~~i~~d~~G~-lwv~~  215 (243)
                      .+..|.+|.|.++||+++...+.|..||+++....+.  +++..              ...+.|..+.++.||+ ||+.+
T Consensus       313 LitDI~iSlDDrfLYvs~W~~GdvrqYDISDP~~Pkl~gqv~lGG~~~~~~~~~v~g~~l~GgPqMvqlS~DGkRlYvTn  392 (461)
T PF05694_consen  313 LITDILISLDDRFLYVSNWLHGDVRQYDISDPFNPKLVGQVFLGGSIRKGDHPVVKGKRLRGGPQMVQLSLDGKRLYVTN  392 (461)
T ss_dssp             ----EEE-TTS-EEEEEETTTTEEEEEE-SSTTS-EEEEEEE-BTTTT-B--TTS------S----EEE-TTSSEEEEE-
T ss_pred             ceEeEEEccCCCEEEEEcccCCcEEEEecCCCCCCcEEeEEEECcEeccCCCccccccccCCCCCeEEEccCCeEEEEEe
Confidence            4578999999999999999999999999986432221  22211              1234677899999996 99976


Q ss_pred             e
Q 026118          216 I  216 (243)
Q Consensus       216 ~  216 (243)
                      .
T Consensus       393 S  393 (461)
T PF05694_consen  393 S  393 (461)
T ss_dssp             -
T ss_pred             e
Confidence            4

The exact function of this protein is unknown although it is thought that SBP56 participates in late stages of intra-Golgi protein transport []. The Lotus japonicus homologue of SBP56, LjSBP is thought to have more than one physiological role and can be implicated in controlling the oxidation/reduction status of target proteins in vesicular Golgi transport [].; GO: 0008430 selenium binding; PDB: 2ECE_A.

>PLN00033 photosystem II stability/assembly factor; Provisional

Probab=96.40  E-value=0.5  Score=40.08  Aligned_cols=137  Identities=10%  Similarity=-0.005  Sum_probs=73.1

Q ss_pred             ceEEccCCCEEEEEeCCCcEEEEecCC-c--EEEEeccCCCcccCCccEEEcCCCcEEEEeCCCCCCcccccccccccCC
Q 026118           54 GLTTTKENNVIIVCDSQQGLLKVSEEG-V--TVLVSQFNGSQLRFANDVIEASDGSLYFTVSSTKFTPAEYYLDLVSGEP  130 (243)
Q Consensus        54 ~i~~~~~g~l~~v~~~~~gl~~~~~~g-~--~~~~~~~~~~~~~~~~~l~~d~~G~l~v~~~~~~~~~~~~~~~~~~~~~  130 (243)
                      ++...++|.+ ++......+++-.+.| .  ..+...    ......++.+.++|.+|++...                 
T Consensus       243 ~v~~~~dG~~-~~vg~~G~~~~s~d~G~~~W~~~~~~----~~~~l~~v~~~~dg~l~l~g~~-----------------  300 (398)
T PLN00033        243 TVNRSPDGDY-VAVSSRGNFYLTWEPGQPYWQPHNRA----SARRIQNMGWRADGGLWLLTRG-----------------  300 (398)
T ss_pred             eEEEcCCCCE-EEEECCccEEEecCCCCcceEEecCC----CccceeeeeEcCCCCEEEEeCC-----------------
Confidence            4566788888 5655444555555555 2  332221    1234567788899999998532                 


Q ss_pred             CceEEEEeCCCC-----eeEEeec--cccccceEEEcCCCCEEEEEEcCCCeEEEEEeecCCCcceEEec--cCCCCCCC
Q 026118          131 HGVLLKYDPSTN-----QTSLVLD--GLYFANGVALSEDERFLVVCESWKFRCVKHFLKVSGRTDREIFI--DNLPGGPD  201 (243)
Q Consensus       131 ~g~v~~~~~~~~-----~~~~~~~--~~~~~~gi~~~~dg~~l~v~~~~~~~i~~~~~~~~~~~~~~~~~--~~~~~~~~  201 (243)
                       |.+++-+.++.     ++.....  ......++.+.+++. +|++.. .+.+++- .+++  ..++...  .....--.
T Consensus       301 -G~l~~S~d~G~~~~~~~f~~~~~~~~~~~l~~v~~~~d~~-~~a~G~-~G~v~~s-~D~G--~tW~~~~~~~~~~~~ly  374 (398)
T PLN00033        301 -GGLYVSKGTGLTEEDFDFEEADIKSRGFGILDVGYRSKKE-AWAAGG-SGILLRS-TDGG--KSWKRDKGADNIAANLY  374 (398)
T ss_pred             -ceEEEecCCCCcccccceeecccCCCCcceEEEEEcCCCc-EEEEEC-CCcEEEe-CCCC--cceeEccccCCCCccee
Confidence             56666544422     1222211  112356678887877 887754 3445443 3332  2222221  11111223


Q ss_pred             ceEECCCCCEEEEEecC
Q 026118          202 NVNLARDGSFWISIIKM  218 (243)
Q Consensus       202 ~i~~d~~G~lwv~~~~~  218 (243)
                      .+.+..+++.|+....|
T Consensus       375 ~v~f~~~~~g~~~G~~G  391 (398)
T PLN00033        375 SVKFFDDKKGFVLGNDG  391 (398)
T ss_pred             EEEEcCCCceEEEeCCc
Confidence            57777778888877654

>KOG4649 consensus PQQ (pyrrolo-quinoline quinone) repeat protein [Secondary metabolites biosynthesis, transport and catabolism]

Probab=96.38  E-value=0.35  Score=38.07  Aligned_cols=99  Identities=14%  Similarity=0.178  Sum_probs=56.4

Q ss_pred             EeCCCcEEEEc-cCC-ceeEecccCCccccceEEccCCCEEEEEeCCCcEEEEe-cCCcEEEEeccCCCcccCCccEEEc
Q 026118           26 ATGDGWIKRMH-PNG-TWEDWHQVGSQSLLGLTTTKENNVIIVCDSQQGLLKVS-EEGVTVLVSQFNGSQLRFANDVIEA  102 (243)
Q Consensus        26 ~~~~~~i~~~~-~~g-~~~~~~~~~~~~~~~i~~~~~g~l~~v~~~~~gl~~~~-~~g~~~~~~~~~~~~~~~~~~l~~d  102 (243)
                      +...+++|.++ .+| +.-.+.....--. ....|+++.++|.+.+++.++.+| .+.--.+...-.+.-...|   +++
T Consensus        69 GCy~g~lYfl~~~tGs~~w~f~~~~~vk~-~a~~d~~~glIycgshd~~~yalD~~~~~cVykskcgG~~f~sP---~i~  144 (354)
T KOG4649|consen   69 GCYSGGLYFLCVKTGSQIWNFVILETVKV-RAQCDFDGGLIYCGSHDGNFYALDPKTYGCVYKSKCGGGTFVSP---VIA  144 (354)
T ss_pred             EEccCcEEEEEecchhheeeeeehhhhcc-ceEEcCCCceEEEecCCCcEEEecccccceEEecccCCceeccc---eec
Confidence            33456666666 444 2222221111112 345678888889999888999999 4321122222223223333   677


Q ss_pred             C-CCcEEEEeCCCCCCcccccccccccCCCceEEEEeCCCCeeEE
Q 026118          103 S-DGSLYFTVSSTKFTPAEYYLDLVSGEPHGVLLKYDPSTNQTSL  146 (243)
Q Consensus       103 ~-~G~l~v~~~~~~~~~~~~~~~~~~~~~~g~v~~~~~~~~~~~~  146 (243)
                      + +|.||++..                  .|.|.+++++......
T Consensus       145 ~g~~sly~a~t------------------~G~vlavt~~~~~~~~  171 (354)
T KOG4649|consen  145 PGDGSLYAAIT------------------AGAVLAVTKNPYSSTE  171 (354)
T ss_pred             CCCceEEEEec------------------cceEEEEccCCCCcce
Confidence            7 889999853                  3678888888664433

>KOG2048 consensus WD40 repeat protein [General function prediction only]

Probab=96.31  E-value=0.71  Score=40.82  Aligned_cols=191  Identities=13%  Similarity=0.055  Sum_probs=100.5

Q ss_pred             eeccccc-CCcccEEEcCCCcEEEEeCCCcEEEEcc-CCceeEecccCCccccceEEccCCCEEEEEeCCCcEE-EEe-c
Q 026118            3 KLGEGIV-NHPEDVSVDGNGVLYTATGDGWIKRMHP-NGTWEDWHQVGSQSLLGLTTTKENNVIIVCDSQQGLL-KVS-E   78 (243)
Q Consensus         3 ~~~~g~~-~~p~~i~~d~~g~l~~~~~~~~i~~~~~-~g~~~~~~~~~~~~~~~i~~~~~g~l~~v~~~~~gl~-~~~-~   78 (243)
                      .+-.|+- ..-++|++-+.|+|+....+|.|..+|. +++.+.-....+.+.++|+..+.+..+-|+- ..|++ .+. .
T Consensus        62 ~vi~g~~drsIE~L~W~e~~RLFS~g~sg~i~EwDl~~lk~~~~~d~~gg~IWsiai~p~~~~l~Igc-ddGvl~~~s~~  140 (691)
T KOG2048|consen   62 PVIHGPEDRSIESLAWAEGGRLFSSGLSGSITEWDLHTLKQKYNIDSNGGAIWSIAINPENTILAIGC-DDGVLYDFSIG  140 (691)
T ss_pred             EEEecCCCCceeeEEEccCCeEEeecCCceEEEEecccCceeEEecCCCcceeEEEeCCccceEEeec-CCceEEEEecC
Confidence            3444443 3578899998889998888899999994 5554443333344555899998888756663 34533 333 3


Q ss_pred             CCcEEEEeccCCCcccCCccEEEcCCCcEEEEeCCCCCCcccccccccccCCCceEEEEeCCCCeeEEee----ccccc-
Q 026118           79 EGVTVLVSQFNGSQLRFANDVIEASDGSLYFTVSSTKFTPAEYYLDLVSGEPHGVLLKYDPSTNQTSLVL----DGLYF-  153 (243)
Q Consensus        79 ~g~~~~~~~~~~~~~~~~~~l~~d~~G~l~v~~~~~~~~~~~~~~~~~~~~~~g~v~~~~~~~~~~~~~~----~~~~~-  153 (243)
                      .+...+..... .....+-++..+++|.-.++.+                 ..|.|-..|...+....+.    ..... 
T Consensus       141 p~~I~~~r~l~-rq~sRvLslsw~~~~~~i~~Gs-----------------~Dg~Iriwd~~~~~t~~~~~~~~d~l~k~  202 (691)
T KOG2048|consen  141 PDKITYKRSLM-RQKSRVLSLSWNPTGTKIAGGS-----------------IDGVIRIWDVKSGQTLHIITMQLDRLSKR  202 (691)
T ss_pred             CceEEEEeecc-cccceEEEEEecCCccEEEecc-----------------cCceEEEEEcCCCceEEEeeecccccccC
Confidence            33222222111 1123455788888887444322                 1234555565554332211    11111 


Q ss_pred             cc----eEEEcCCCCEEEEEEcCCCeEEEEEeecCCCcceEEeccCCCCCCCceEECCCCC-EEEEEec
Q 026118          154 AN----GVALSEDERFLVVCESWKFRCVKHFLKVSGRTDREIFIDNLPGGPDNVNLARDGS-FWISIIK  217 (243)
Q Consensus       154 ~~----gi~~~~dg~~l~v~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~i~~d~~G~-lwv~~~~  217 (243)
                      -.    ++.+-.++. +. +....+.|..+|...+++-+...   ....-.-.|+.+.+++ ++.++.+
T Consensus       203 ~~~iVWSv~~Lrd~t-I~-sgDS~G~V~FWd~~~gTLiqS~~---~h~adVl~Lav~~~~d~vfsaGvd  266 (691)
T KOG2048|consen  203 EPTIVWSVLFLRDST-IA-SGDSAGTVTFWDSIFGTLIQSHS---CHDADVLALAVADNEDRVFSAGVD  266 (691)
T ss_pred             CceEEEEEEEeecCc-EE-EecCCceEEEEcccCcchhhhhh---hhhcceeEEEEcCCCCeEEEccCC
Confidence            11    233335664 44 33456888888876543322111   1111233466666543 5555544

>KOG0289 consensus mRNA splicing factor [General function prediction only]

Probab=96.24  E-value=0.3  Score=40.90  Aligned_cols=132  Identities=10%  Similarity=0.136  Sum_probs=78.6

Q ss_pred             ccEEEcCCCcEEEEe-CCCcEEEEc-cCC-ceeEecccCCccccceEEccCCCEEEEEeCCCc-EEEEe-cC-C-cEEEE
Q 026118           13 EDVSVDGNGVLYTAT-GDGWIKRMH-PNG-TWEDWHQVGSQSLLGLTTTKENNVIIVCDSQQG-LLKVS-EE-G-VTVLV   85 (243)
Q Consensus        13 ~~i~~d~~g~l~~~~-~~~~i~~~~-~~g-~~~~~~~~~~~~~~~i~~~~~g~l~~v~~~~~g-l~~~~-~~-g-~~~~~   85 (243)
                      .+.++-|||.|+... .++.|-.+| ..+ .+..|... ..|...|.|+.+|-+|.++. .++ |..+| +. . ++.+.
T Consensus       351 ts~~fHpDgLifgtgt~d~~vkiwdlks~~~~a~Fpgh-t~~vk~i~FsENGY~Lat~a-dd~~V~lwDLRKl~n~kt~~  428 (506)
T KOG0289|consen  351 TSAAFHPDGLIFGTGTPDGVVKIWDLKSQTNVAKFPGH-TGPVKAISFSENGYWLATAA-DDGSVKLWDLRKLKNFKTIQ  428 (506)
T ss_pred             EEeeEcCCceEEeccCCCceEEEEEcCCccccccCCCC-CCceeEEEeccCceEEEEEe-cCCeEEEEEehhhcccceee
Confidence            356777888877544 677677777 332 34445432 23444899998887644444 445 88888 43 2 44443


Q ss_pred             eccCCCcccCCccEEEcCCCcEEEEeCCCCCCcccccccccccCCCceEEEEeCCCCeeEEee---ccccccceEEEcCC
Q 026118           86 SQFNGSQLRFANDVIEASDGSLYFTVSSTKFTPAEYYLDLVSGEPHGVLLKYDPSTNQTSLVL---DGLYFANGVALSED  162 (243)
Q Consensus        86 ~~~~~~~~~~~~~l~~d~~G~l~v~~~~~~~~~~~~~~~~~~~~~~g~v~~~~~~~~~~~~~~---~~~~~~~gi~~~~d  162 (243)
                      . .+.   -.++.+.+|..|.+.+.-.                 ..-.||.+...+.+++.+.   ......+++.|...
T Consensus       429 l-~~~---~~v~s~~fD~SGt~L~~~g-----------------~~l~Vy~~~k~~k~W~~~~~~~~~sg~st~v~Fg~~  487 (506)
T KOG0289|consen  429 L-DEK---KEVNSLSFDQSGTYLGIAG-----------------SDLQVYICKKKTKSWTEIKELADHSGLSTGVRFGEH  487 (506)
T ss_pred             c-ccc---ccceeEEEcCCCCeEEeec-----------------ceeEEEEEecccccceeeehhhhcccccceeeeccc
Confidence            2 111   2467889999998666521                 2236888887777666542   22345677777665


Q ss_pred             CCEEE
Q 026118          163 ERFLV  167 (243)
Q Consensus       163 g~~l~  167 (243)
                      -+++.
T Consensus       488 aq~l~  492 (506)
T KOG0289|consen  488 AQYLA  492 (506)
T ss_pred             ceEEe
Confidence            55333

>KOG0319 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]

Probab=96.18  E-value=0.33  Score=43.25  Aligned_cols=147  Identities=13%  Similarity=0.100  Sum_probs=85.8

Q ss_pred             EEEcCCCcEEEEeCCCcEEEEc-cCCcee-Eeccc-CCccccceEEccCCCEEEEEeCCCcEE-EEe-cCC--cEEEEec
Q 026118           15 VSVDGNGVLYTATGDGWIKRMH-PNGTWE-DWHQV-GSQSLLGLTTTKENNVIIVCDSQQGLL-KVS-EEG--VTVLVSQ   87 (243)
Q Consensus        15 i~~d~~g~l~~~~~~~~i~~~~-~~g~~~-~~~~~-~~~~~~~i~~~~~g~l~~v~~~~~gl~-~~~-~~g--~~~~~~~   87 (243)
                      ++++++|....+..+..|..++ .+++.. +.... ...-...+++++|+++|+.+.. ..+. .+. ++|  .+.+...
T Consensus        25 ~~~s~nG~~L~t~~~d~Vi~idv~t~~~~l~s~~~ed~d~ita~~l~~d~~~L~~a~r-s~llrv~~L~tgk~irswKa~  103 (775)
T KOG0319|consen   25 VAWSSNGQHLYTACGDRVIIIDVATGSIALPSGSNEDEDEITALALTPDEEVLVTASR-SQLLRVWSLPTGKLIRSWKAI  103 (775)
T ss_pred             eeECCCCCEEEEecCceEEEEEccCCceecccCCccchhhhheeeecCCccEEEEeec-cceEEEEEcccchHhHhHhhc
Confidence            8899999766665666788887 566653 22111 1111227888899888566654 4444 444 666  3322211


Q ss_pred             cCCCcccCCccEEEcCCCcEEEEeCCCCCCcccccccccccCCCceEEEEeCCCCeeEEeecc-ccccceEEEcCCCC-E
Q 026118           88 FNGSQLRFANDVIEASDGSLYFTVSSTKFTPAEYYLDLVSGEPHGVLLKYDPSTNQTSLVLDG-LYFANGVALSEDER-F  165 (243)
Q Consensus        88 ~~~~~~~~~~~l~~d~~G~l~v~~~~~~~~~~~~~~~~~~~~~~g~v~~~~~~~~~~~~~~~~-~~~~~gi~~~~dg~-~  165 (243)
                      -.+    .+-.|+++|.|.+..+-                 ...+.+-..|-..+.......+ ......+.|+|+-+ +
T Consensus       104 He~----Pvi~ma~~~~g~LlAtg-----------------gaD~~v~VWdi~~~~~th~fkG~gGvVssl~F~~~~~~~  162 (775)
T KOG0319|consen  104 HEA----PVITMAFDPTGTLLATG-----------------GADGRVKVWDIKNGYCTHSFKGHGGVVSSLLFHPHWNRW  162 (775)
T ss_pred             cCC----CeEEEEEcCCCceEEec-----------------cccceEEEEEeeCCEEEEEecCCCceEEEEEeCCccchh
Confidence            111    13367899988655541                 1234555555554554444444 34456788888655 3


Q ss_pred             EEEEEcCCCeEEEEEeec
Q 026118          166 LVVCESWKFRCVKHFLKV  183 (243)
Q Consensus       166 l~v~~~~~~~i~~~~~~~  183 (243)
                      +.++...++.+..|+...
T Consensus       163 lL~sg~~D~~v~vwnl~~  180 (775)
T KOG0319|consen  163 LLASGATDGTVRVWNLND  180 (775)
T ss_pred             heeecCCCceEEEEEccc
Confidence            445556678899999874

>PF14517 Tachylectin: Tachylectin; PDB: 1TL2_A

Probab=96.18  E-value=0.034  Score=42.91  Aligned_cols=120  Identities=22%  Similarity=0.285  Sum_probs=56.6

Q ss_pred             ceecccccCCcccEEEcCCCcEEEEeCCCcEEEEc-cCCceeEec--------ccCCc-cccceEEccCCCEEEEEeCCC
Q 026118            2 IKLGEGIVNHPEDVSVDGNGVLYTATGDGWIKRMH-PNGTWEDWH--------QVGSQ-SLLGLTTTKENNVIIVCDSQQ   71 (243)
Q Consensus         2 ~~~~~g~~~~p~~i~~d~~g~l~~~~~~~~i~~~~-~~g~~~~~~--------~~~~~-~~~~i~~~~~g~l~~v~~~~~   71 (243)
                      ++++.|....=..|++|++|.||....++.++|.. +...-..|.        ...-+ .. .+.++++|.| |+.+.+.
T Consensus        73 ~~Ig~g~W~~F~~i~~d~~G~LYaV~~~G~lyR~~~~~~~~~~W~~~~~~~iG~~GW~~f~-~vfa~~~GvL-Y~i~~dg  150 (229)
T PF14517_consen   73 KQIGDGGWNSFKFIFFDPTGVLYAVTPDGKLYRHPRPTNGSDNWIGGSGKKIGGTGWNDFD-AVFAGPNGVL-YAITPDG  150 (229)
T ss_dssp             EEEE-S-GGG-SEEEE-TTS-EEEEETT-EEEEES---STT--HHH-HSEEEE-SSGGGEE-EEEE-TTS-E-EEEETTE
T ss_pred             cccccCcccceeEEEecCCccEEEeccccceeeccCCCccCcchhhccceecccCCCccce-EEEeCCCccE-EEEcCCC
Confidence            34566633333389999999999888889999987 222111121        11111 22 5677899988 8887544


Q ss_pred             cEEEEe-cCC--cEEE--EeccCCCcccCCccEEEcCCCcEEEEeCCCCCCcccccccccccCCCceEEEEeCCC
Q 026118           72 GLLKVS-EEG--VTVL--VSQFNGSQLRFANDVIEASDGSLYFTVSSTKFTPAEYYLDLVSGEPHGVLLKYDPST  141 (243)
Q Consensus        72 gl~~~~-~~g--~~~~--~~~~~~~~~~~~~~l~~d~~G~l~v~~~~~~~~~~~~~~~~~~~~~~g~v~~~~~~~  141 (243)
                      .+++.. +++  -+.+  ...+....-....-|...++|+||..++                  .|.|||+.+.+
T Consensus       151 ~~~~~~~p~~~~~~W~~~s~~v~~~gw~~~~~i~~~~~g~L~~V~~------------------~G~lyr~~~p~  207 (229)
T PF14517_consen  151 RLYRRYRPDGGSDRWLSGSGLVGGGGWDSFHFIFFSPDGNLWAVKS------------------NGKLYRGRPPQ  207 (229)
T ss_dssp             -EEEE---SSTT--HHHH-EEEESSSGGGEEEEEE-TTS-EEEE-E------------------TTEEEEES---
T ss_pred             ceEEeCCCCCCCCccccccceeccCCcccceEEeeCCCCcEEEEec------------------CCEEeccCCcc
Confidence            477774 322  1100  0001111112234567778999998843                  36899887764

>PF07494 Reg_prop: Two component regulator propeller; InterPro: IPR011110 A large group of two component regulator proteins appear to have the same N-terminal structure of 14 tandem repeats

Probab=96.14  E-value=0.0054  Score=29.41  Aligned_cols=17  Identities=24%  Similarity=0.499  Sum_probs=13.7

Q ss_pred             CCceEECCCCCEEEEEe
Q 026118          200 PDNVNLARDGSFWISII  216 (243)
Q Consensus       200 ~~~i~~d~~G~lwv~~~  216 (243)
                      ...|+.|++|+|||++.
T Consensus         7 I~~i~~D~~G~lWigT~   23 (24)
T PF07494_consen    7 IYSIYEDSDGNLWIGTY   23 (24)
T ss_dssp             EEEEEE-TTSCEEEEET
T ss_pred             EEEEEEcCCcCEEEEeC
Confidence            45689999999999985

These repeats show homology to members of IPR002372 from INTERPRO and IPR001680 from INTERPRO indicating that they are likely to form a beta-propeller. This family has been built with artificially high cut-offs in order to avoid overlaps with other beta-propeller families. The fourteen repeats are likely to form two propellers; it is not clear if these structures are likely to recruit other proteins or interact with DNA.; PDB: 3V9F_D 3VA6_B 3OTT_B 4A2M_D 4A2L_B.

>KOG0292 consensus Vesicle coat complex COPI, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]

Probab=96.14  E-value=0.3  Score=44.72  Aligned_cols=69  Identities=14%  Similarity=0.154  Sum_probs=51.7

Q ss_pred             cccCCcccEEEcCCCcEEEEe-CCCcEEEEccC--CceeEecccCCccccceEEccCCCEEEEEeCCCcEEEEe
Q 026118            7 GIVNHPEDVSVDGNGVLYTAT-GDGWIKRMHPN--GTWEDWHQVGSQSLLGLTTTKENNVIIVCDSQQGLLKVS   77 (243)
Q Consensus         7 g~~~~p~~i~~d~~g~l~~~~-~~~~i~~~~~~--g~~~~~~~~~~~~~~~i~~~~~g~l~~v~~~~~gl~~~~   77 (243)
                      |..++-.++.+++...|.+++ .++.|..+|.+  ..+..+.....+-+ -++..|..++ |.+.++.|+..|.
T Consensus       248 gH~nnVssvlfhp~q~lIlSnsEDksirVwDm~kRt~v~tfrrendRFW-~laahP~lNL-fAAgHDsGm~VFk  319 (1202)
T KOG0292|consen  248 GHYNNVSSVLFHPHQDLILSNSEDKSIRVWDMTKRTSVQTFRRENDRFW-ILAAHPELNL-FAAGHDSGMIVFK  319 (1202)
T ss_pred             cccCCcceEEecCccceeEecCCCccEEEEecccccceeeeeccCCeEE-EEEecCCcce-eeeecCCceEEEE
Confidence            345677789999988888777 78889999843  34555554444445 8899999999 9998888977775

>PF05694 SBP56: 56kDa selenium binding protein (SBP56); InterPro: IPR008826 This family consists of several eukaryotic selenium binding proteins as well as three sequences from archaea

Probab=96.11  E-value=0.74  Score=39.11  Aligned_cols=196  Identities=11%  Similarity=0.063  Sum_probs=86.3

Q ss_pred             CCcEEEEe-CCCcEEEEc--cCCc---e-eEecc-------cCCccccceEEccCCCEEEEEeCC-------CcEEEEec
Q 026118           20 NGVLYTAT-GDGWIKRMH--PNGT---W-EDWHQ-------VGSQSLLGLTTTKENNVIIVCDSQ-------QGLLKVSE   78 (243)
Q Consensus        20 ~g~l~~~~-~~~~i~~~~--~~g~---~-~~~~~-------~~~~~~~~i~~~~~g~l~~v~~~~-------~gl~~~~~   78 (243)
                      ...|++.. ..++||.+|  ++-+   + +.+..       ....|. ....-++|++ +|...+       .|++.+|.
T Consensus        87 Rr~Li~PgL~SsrIyviD~~~dPr~P~l~KvIe~~ev~~k~g~s~PH-T~Hclp~G~i-mIS~lGd~~G~g~Ggf~llD~  164 (461)
T PF05694_consen   87 RRYLILPGLRSSRIYVIDTKTDPRKPRLHKVIEPEEVFEKTGLSRPH-TVHCLPDGRI-MISALGDADGNGPGGFVLLDG  164 (461)
T ss_dssp             S-EEEEEBTTT--EEEEE--S-TTS-EEEEEE-HHHHHHHH-EEEEE-EEEE-SS--E-EEEEEEETTS-S--EEEEE-T
T ss_pred             CCcEEeeeeccCcEEEEECCCCCCCCceEeeeCHHHHHhhcCCCCCc-eeeecCCccE-EEEeccCCCCCCCCcEEEEcC
Confidence            34577776 778999999  2222   1 11211       012344 4445588988 665421       35888884


Q ss_pred             CCcEEEEec-cCCCcccCCccEEEcCCCcEEEEeCCCCCCcc------cccccccccCCCceEEEEeCCCCeeEEeec--
Q 026118           79 EGVTVLVSQ-FNGSQLRFANDVIEASDGSLYFTVSSTKFTPA------EYYLDLVSGEPHGVLLKYDPSTNQTSLVLD--  149 (243)
Q Consensus        79 ~g~~~~~~~-~~~~~~~~~~~l~~d~~G~l~v~~~~~~~~~~------~~~~~~~~~~~~g~v~~~~~~~~~~~~~~~--  149 (243)
                      +.+...... .......+..++.+.+..++-++..   |+..      ....++........|...|..+.+..+...  
T Consensus       165 ~tf~v~g~We~~~~~~~~gYDfw~qpr~nvMiSSe---Wg~P~~~~~Gf~~~d~~~~~yG~~l~vWD~~~r~~~Q~idLg  241 (461)
T PF05694_consen  165 ETFEVKGRWEKDRGPQPFGYDFWYQPRHNVMISSE---WGAPSMFEKGFNPEDLEAGKYGHSLHVWDWSTRKLLQTIDLG  241 (461)
T ss_dssp             TT--EEEE--SB-TT------EEEETTTTEEEE-B------HHHHTT---TTTHHHH-S--EEEEEETTTTEEEEEEES-
T ss_pred             ccccccceeccCCCCCCCCCCeEEcCCCCEEEEec---cCChhhcccCCChhHhhcccccCeEEEEECCCCcEeeEEecC
Confidence            433332221 1111234556777888888888753   3321      011222223334568889998777765432  


Q ss_pred             -cccccceEEE--cCCCCEEEEEEcCCCeEEEEEee-cCCCcceEEe--cc---------CC-------CCCCCceEECC
Q 026118          150 -GLYFANGVAL--SEDERFLVVCESWKFRCVKHFLK-VSGRTDREIF--ID---------NL-------PGGPDNVNLAR  207 (243)
Q Consensus       150 -~~~~~~gi~~--~~dg~~l~v~~~~~~~i~~~~~~-~~~~~~~~~~--~~---------~~-------~~~~~~i~~d~  207 (243)
                       ....|--+-|  +|+..+-|++...+.+|+++..+ ++.-....++  ..         ..       ++++..|.++-
T Consensus       242 ~~g~~pLEvRflH~P~~~~gFvg~aLss~i~~~~k~~~g~W~a~kVi~ip~~~v~~~~lp~ml~~~~~~P~LitDI~iSl  321 (461)
T PF05694_consen  242 EEGQMPLEVRFLHDPDANYGFVGCALSSSIWRFYKDDDGEWAAEKVIDIPAKKVEGWILPEMLKPFGAVPPLITDILISL  321 (461)
T ss_dssp             TTEEEEEEEEE-SSTT--EEEEEEE--EEEEEEEE-ETTEEEEEEEEEE--EE--SS---GGGGGG-EE------EEE-T
T ss_pred             CCCCceEEEEecCCCCccceEEEEeccceEEEEEEcCCCCeeeeEEEECCCcccCcccccccccccccCCCceEeEEEcc
Confidence             1223433433  56677788888888899998774 3211111111  10         11       45677888888


Q ss_pred             CCC-EEEEEecCCc
Q 026118          208 DGS-FWISIIKMDP  220 (243)
Q Consensus       208 ~G~-lwv~~~~~~~  220 (243)
                      |.+ |||++|..+.
T Consensus       322 DDrfLYvs~W~~Gd  335 (461)
T PF05694_consen  322 DDRFLYVSNWLHGD  335 (461)
T ss_dssp             TS-EEEEEETTTTE
T ss_pred             CCCEEEEEcccCCc
Confidence            887 9999987653

The exact function of this protein is unknown although it is thought that SBP56 participates in late stages of intra-Golgi protein transport []. The Lotus japonicus homologue of SBP56, LjSBP is thought to have more than one physiological role and can be implicated in controlling the oxidation/reduction status of target proteins in vesicular Golgi transport [].; GO: 0008430 selenium binding; PDB: 2ECE_A.

>PF07494 Reg_prop: Two component regulator propeller; InterPro: IPR011110 A large group of two component regulator proteins appear to have the same N-terminal structure of 14 tandem repeats

Probab=96.02  E-value=0.011  Score=28.36  Aligned_cols=20  Identities=25%  Similarity=0.313  Sum_probs=15.8

Q ss_pred             ccCCccEEEcCCCcEEEEeC
Q 026118           93 LRFANDVIEASDGSLYFTVS  112 (243)
Q Consensus        93 ~~~~~~l~~d~~G~l~v~~~  112 (243)
                      .+.+.+|..|++|++|+++.
T Consensus         4 ~n~I~~i~~D~~G~lWigT~   23 (24)
T PF07494_consen    4 NNNIYSIYEDSDGNLWIGTY   23 (24)
T ss_dssp             SSCEEEEEE-TTSCEEEEET
T ss_pred             CCeEEEEEEcCCcCEEEEeC
Confidence            45678999999999999863

These repeats show homology to members of IPR002372 from INTERPRO and IPR001680 from INTERPRO indicating that they are likely to form a beta-propeller. This family has been built with artificially high cut-offs in order to avoid overlaps with other beta-propeller families. The fourteen repeats are likely to form two propellers; it is not clear if these structures are likely to recruit other proteins or interact with DNA.; PDB: 3V9F_D 3VA6_B 3OTT_B 4A2M_D 4A2L_B.

>KOG0288 consensus WD40 repeat protein TipD [General function prediction only]

Probab=95.95  E-value=0.48  Score=39.49  Aligned_cols=124  Identities=12%  Similarity=0.060  Sum_probs=73.0

Q ss_pred             CCCcEEEEcc-CCceeEecccCCccccceEEccCCCEEEEEeCCCcEEEEe-cCC-cEEEEeccCCCc-ccCCccEEEcC
Q 026118           28 GDGWIKRMHP-NGTWEDWHQVGSQSLLGLTTTKENNVIIVCDSQQGLLKVS-EEG-VTVLVSQFNGSQ-LRFANDVIEAS  103 (243)
Q Consensus        28 ~~~~i~~~~~-~g~~~~~~~~~~~~~~~i~~~~~g~l~~v~~~~~gl~~~~-~~g-~~~~~~~~~~~~-~~~~~~l~~d~  103 (243)
                      .++.|..+|. ......-....+... ++....+|.-+..+...+-+-.+| .+- +.+... ..+.. ..-...++++|
T Consensus       320 ~DkkvRfwD~Rs~~~~~sv~~gg~vt-Sl~ls~~g~~lLsssRDdtl~viDlRt~eI~~~~s-A~g~k~asDwtrvvfSp  397 (459)
T KOG0288|consen  320 FDKKVRFWDIRSADKTRSVPLGGRVT-SLDLSMDGLELLSSSRDDTLKVIDLRTKEIRQTFS-AEGFKCASDWTRVVFSP  397 (459)
T ss_pred             cccceEEEeccCCceeeEeecCccee-eEeeccCCeEEeeecCCCceeeeecccccEEEEee-ccccccccccceeEECC
Confidence            5667777772 222222222223444 777888887646665445566666 433 333222 11111 12244678899


Q ss_pred             CCcEEEEeCCCCCCcccccccccccCCCceEEEEeCCCCeeEEeecc---ccccceEEEcCCCCEEEEEE
Q 026118          104 DGSLYFTVSSTKFTPAEYYLDLVSGEPHGVLLKYDPSTNQTSLVLDG---LYFANGVALSEDERFLVVCE  170 (243)
Q Consensus       104 ~G~l~v~~~~~~~~~~~~~~~~~~~~~~g~v~~~~~~~~~~~~~~~~---~~~~~gi~~~~dg~~l~v~~  170 (243)
                      ++.+..+.                 ...+.||..+..+++++.....   ....+.++|++-|.+|.-++
T Consensus       398 d~~YvaAG-----------------S~dgsv~iW~v~tgKlE~~l~~s~s~~aI~s~~W~~sG~~Llsad  450 (459)
T KOG0288|consen  398 DGSYVAAG-----------------SADGSVYIWSVFTGKLEKVLSLSTSNAAITSLSWNPSGSGLLSAD  450 (459)
T ss_pred             CCceeeec-----------------cCCCcEEEEEccCceEEEEeccCCCCcceEEEEEcCCCchhhccc
Confidence            98877663                 2457899999999988876432   22456789999888776554

>KOG0772 consensus Uncharacterized conserved protein, contains WD40 repeat [Function unknown]

Probab=95.95  E-value=0.22  Score=42.71  Aligned_cols=145  Identities=10%  Similarity=0.018  Sum_probs=84.8

Q ss_pred             ccceEEccCCCEEEEEeCCCcEEEEecCC----cEEEEeccCCCcccCCccEEEcCCCcEEEEeCCCCCCcccccccccc
Q 026118           52 LLGLTTTKENNVIIVCDSQQGLLKVSEEG----VTVLVSQFNGSQLRFANDVIEASDGSLYFTVSSTKFTPAEYYLDLVS  127 (243)
Q Consensus        52 ~~~i~~~~~g~l~~v~~~~~gl~~~~~~g----~~~~~~~~~~~~~~~~~~l~~d~~G~l~v~~~~~~~~~~~~~~~~~~  127 (243)
                      ++.+++|+.|-.++.+....-+..+|-.|    .+.+. ....-....++++.+.+-|..+++.++              
T Consensus       170 Vsal~~Dp~GaR~~sGs~Dy~v~~wDf~gMdas~~~fr-~l~P~E~h~i~sl~ys~Tg~~iLvvsg--------------  234 (641)
T KOG0772|consen  170 VSALAVDPSGARFVSGSLDYTVKFWDFQGMDASMRSFR-QLQPCETHQINSLQYSVTGDQILVVSG--------------  234 (641)
T ss_pred             EEEeeecCCCceeeeccccceEEEEecccccccchhhh-ccCcccccccceeeecCCCCeEEEEec--------------
Confidence            43789999998745555555677777223    23222 222223356778888888776655433              


Q ss_pred             cCCCceEEEEeCCCCeeEEeeccc-------------cccceEEEcCCCCEEEEEEcCCCeEEEEEeecCCCcceEEecc
Q 026118          128 GEPHGVLLKYDPSTNQTSLVLDGL-------------YFANGVALSEDERFLVVCESWKFRCVKHFLKVSGRTDREIFID  194 (243)
Q Consensus       128 ~~~~g~v~~~~~~~~~~~~~~~~~-------------~~~~gi~~~~dg~~l~v~~~~~~~i~~~~~~~~~~~~~~~~~~  194 (243)
                         +...-.+|.++.++-....+-             ...+.-.|+|+.+-.+++...++++..++.+.. ..+.+++..
T Consensus       235 ---~aqakl~DRdG~~~~e~~KGDQYI~Dm~nTKGHia~lt~g~whP~~k~~FlT~s~DgtlRiWdv~~~-k~q~qVik~  310 (641)
T KOG0772|consen  235 ---SAQAKLLDRDGFEIVEFSKGDQYIRDMYNTKGHIAELTCGCWHPDNKEEFLTCSYDGTLRIWDVNNT-KSQLQVIKT  310 (641)
T ss_pred             ---CcceeEEccCCceeeeeeccchhhhhhhccCCceeeeeccccccCcccceEEecCCCcEEEEecCCc-hhheeEEee
Confidence               122334566644433332211             112345788888878888888888888888753 355566643


Q ss_pred             CCCC----CCCceEECCCCCEEEEE
Q 026118          195 NLPG----GPDNVNLARDGSFWISI  215 (243)
Q Consensus       195 ~~~~----~~~~i~~d~~G~lwv~~  215 (243)
                      ...+    -+...+++++|.+..+.
T Consensus       311 k~~~g~Rv~~tsC~~nrdg~~iAag  335 (641)
T KOG0772|consen  311 KPAGGKRVPVTSCAWNRDGKLIAAG  335 (641)
T ss_pred             ccCCCcccCceeeecCCCcchhhhc
Confidence            2211    24557788999874443

>KOG0973 consensus Histone transcription regulator HIRA, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning; Transcription]

Probab=95.95  E-value=0.74  Score=42.70  Aligned_cols=144  Identities=16%  Similarity=0.086  Sum_probs=81.1

Q ss_pred             ceEEccCCCEEEEEeCCCcEE-EEecC--C----c---------EEEE--eccCCCcccCCccEEEcCCCcEEEEeCCCC
Q 026118           54 GLTTTKENNVIIVCDSQQGLL-KVSEE--G----V---------TVLV--SQFNGSQLRFANDVIEASDGSLYFTVSSTK  115 (243)
Q Consensus        54 ~i~~~~~g~l~~v~~~~~gl~-~~~~~--g----~---------~~~~--~~~~~~~~~~~~~l~~d~~G~l~v~~~~~~  115 (243)
                      ++.+++||..|+++. +++++ .+...  +    +         +...  ....+ ..+-+.+++.+|++.+.++.+   
T Consensus        74 CVR~S~dG~~lAsGS-DD~~v~iW~~~~~~~~~~fgs~g~~~~vE~wk~~~~l~~-H~~DV~Dv~Wsp~~~~lvS~s---  148 (942)
T KOG0973|consen   74 CVRFSPDGSYLASGS-DDRLVMIWERAEIGSGTVFGSTGGAKNVESWKVVSILRG-HDSDVLDVNWSPDDSLLVSVS---  148 (942)
T ss_pred             EEEECCCCCeEeecc-CcceEEEeeecccCCcccccccccccccceeeEEEEEec-CCCccceeccCCCccEEEEec---
Confidence            778999999856665 44543 33322  1    1         1100  01112 123456788999998888743   


Q ss_pred             CCcccccccccccCCCceEEEEeCCCCeeEEeec-cccccceEEEcCCCCEEEEEEcCCCeEEEEEeecCCCcce--EEe
Q 026118          116 FTPAEYYLDLVSGEPHGVLLKYDPSTNQTSLVLD-GLYFANGVALSEDERFLVVCESWKFRCVKHFLKVSGRTDR--EIF  192 (243)
Q Consensus       116 ~~~~~~~~~~~~~~~~g~v~~~~~~~~~~~~~~~-~~~~~~gi~~~~dg~~l~v~~~~~~~i~~~~~~~~~~~~~--~~~  192 (243)
                                    ..+.|..+|..+.+...... ....+-|+.|||-|+++- +...+..|..|+..+-.+.+.  +.|
T Consensus       149 --------------~DnsViiwn~~tF~~~~vl~~H~s~VKGvs~DP~Gky~A-SqsdDrtikvwrt~dw~i~k~It~pf  213 (942)
T KOG0973|consen  149 --------------LDNSVIIWNAKTFELLKVLRGHQSLVKGVSWDPIGKYFA-SQSDDRTLKVWRTSDWGIEKSITKPF  213 (942)
T ss_pred             --------------ccceEEEEccccceeeeeeecccccccceEECCccCeee-eecCCceEEEEEcccceeeEeeccch
Confidence                          24578889988765544443 345678999999999544 445567777777543111110  011


Q ss_pred             cc-CCCCCCCceEECCCCCEEEEEec
Q 026118          193 ID-NLPGGPDNVNLARDGSFWISIIK  217 (243)
Q Consensus       193 ~~-~~~~~~~~i~~d~~G~lwv~~~~  217 (243)
                      .. ....+-.-+..+|||...++.+.
T Consensus       214 ~~~~~~T~f~RlSWSPDG~~las~nA  239 (942)
T KOG0973|consen  214 EESPLTTFFLRLSWSPDGHHLASPNA  239 (942)
T ss_pred             hhCCCcceeeecccCCCcCeecchhh
Confidence            00 11123333666777776665544

>KOG0272 consensus U4/U6 small nuclear ribonucleoprotein Prp4 (contains WD40 repeats) [RNA processing and modification]

Probab=95.88  E-value=0.46  Score=39.67  Aligned_cols=152  Identities=13%  Similarity=0.065  Sum_probs=81.6

Q ss_pred             cccccCCcccEEEcCCCcEEEEeCCCcE-EEEc-cCCceeEecccCCccccceEEccCCCEEEEEeCCCcEEEEe-cCCc
Q 026118            5 GEGIVNHPEDVSVDGNGVLYTATGDGWI-KRMH-PNGTWEDWHQVGSQSLLGLTTTKENNVIIVCDSQQGLLKVS-EEGV   81 (243)
Q Consensus         5 ~~g~~~~p~~i~~d~~g~l~~~~~~~~i-~~~~-~~g~~~~~~~~~~~~~~~i~~~~~g~l~~v~~~~~gl~~~~-~~g~   81 (243)
                      -||.-..-.+|++-+||-|..+.....+ ..+| ..|+-.-+......+..+++++|+|-. .++....+.+++- -.+.
T Consensus       299 QEGHs~~v~~iaf~~DGSL~~tGGlD~~~RvWDlRtgr~im~L~gH~k~I~~V~fsPNGy~-lATgs~Dnt~kVWDLR~r  377 (459)
T KOG0272|consen  299 QEGHSKGVFSIAFQPDGSLAATGGLDSLGRVWDLRTGRCIMFLAGHIKEILSVAFSPNGYH-LATGSSDNTCKVWDLRMR  377 (459)
T ss_pred             hcccccccceeEecCCCceeeccCccchhheeecccCcEEEEecccccceeeEeECCCceE-EeecCCCCcEEEeeeccc
Confidence            3554456778999999988766532222 4455 344433222222233338999999987 4443345555443 2221


Q ss_pred             EEEEeccCCCcccCCccEEEcC-CCcEEEEeCCCCCCcccccccccccCCCceEEEEeCCCCeeEE-eeccccccceEEE
Q 026118           82 TVLVSQFNGSQLRFANDVIEAS-DGSLYFTVSSTKFTPAEYYLDLVSGEPHGVLLKYDPSTNQTSL-VLDGLYFANGVAL  159 (243)
Q Consensus        82 ~~~~~~~~~~~~~~~~~l~~d~-~G~l~v~~~~~~~~~~~~~~~~~~~~~~g~v~~~~~~~~~~~~-~~~~~~~~~gi~~  159 (243)
                      ..+...+.  ..+.+..|.++| .|.+.++-+.                 .+.+-.+...+..... ++.......++.+
T Consensus       378 ~~ly~ipA--H~nlVS~Vk~~p~~g~fL~Tasy-----------------D~t~kiWs~~~~~~~ksLaGHe~kV~s~Di  438 (459)
T KOG0272|consen  378 SELYTIPA--HSNLVSQVKYSPQEGYFLVTASY-----------------DNTVKIWSTRTWSPLKSLAGHEGKVISLDI  438 (459)
T ss_pred             ccceeccc--ccchhhheEecccCCeEEEEccc-----------------CcceeeecCCCcccchhhcCCccceEEEEe
Confidence            22221111  124567889998 4566665322                 2334444555444333 3344455678889


Q ss_pred             cCCCCEEEEEEcCCCeEE
Q 026118          160 SEDERFLVVCESWKFRCV  177 (243)
Q Consensus       160 ~~dg~~l~v~~~~~~~i~  177 (243)
                      ++|+.+ .++...+.++-
T Consensus       439 s~d~~~-i~t~s~DRT~K  455 (459)
T KOG0272|consen  439 SPDSQA-IATSSFDRTIK  455 (459)
T ss_pred             ccCCce-EEEeccCceee
Confidence            999984 44444555543

>KOG0973 consensus Histone transcription regulator HIRA, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning; Transcription]

Probab=95.84  E-value=0.38  Score=44.51  Aligned_cols=137  Identities=14%  Similarity=0.150  Sum_probs=74.4

Q ss_pred             ccEEEcCCC-cEEEEeCCCcEEEEccC-----------C---ceeEec------ccCCccccceEEccCCCEEEEEeCCC
Q 026118           13 EDVSVDGNG-VLYTATGDGWIKRMHPN-----------G---TWEDWH------QVGSQSLLGLTTTKENNVIIVCDSQQ   71 (243)
Q Consensus        13 ~~i~~d~~g-~l~~~~~~~~i~~~~~~-----------g---~~~~~~------~~~~~~~~~i~~~~~g~l~~v~~~~~   71 (243)
                      .++-+.+|| .|++|.++.-|..+...           |   .+..|.      -...... .+.-+|++.+|..+..+.
T Consensus        73 ~CVR~S~dG~~lAsGSDD~~v~iW~~~~~~~~~~fgs~g~~~~vE~wk~~~~l~~H~~DV~-Dv~Wsp~~~~lvS~s~Dn  151 (942)
T KOG0973|consen   73 NCVRFSPDGSYLASGSDDRLVMIWERAEIGSGTVFGSTGGAKNVESWKVVSILRGHDSDVL-DVNWSPDDSLLVSVSLDN  151 (942)
T ss_pred             eEEEECCCCCeEeeccCcceEEEeeecccCCcccccccccccccceeeEEEEEecCCCccc-eeccCCCccEEEEecccc
Confidence            356678888 46677666655555422           0   011111      1112334 667788888845555556


Q ss_pred             cEEEEe-cCC--cEEEEeccCCCcccCCccEEEcCCCcEEEEeCCCCCCcccccccccccCCCceEEEEeCCCCeeEEe-
Q 026118           72 GLLKVS-EEG--VTVLVSQFNGSQLRFANDVIEASDGSLYFTVSSTKFTPAEYYLDLVSGEPHGVLLKYDPSTNQTSLV-  147 (243)
Q Consensus        72 gl~~~~-~~g--~~~~~~~~~~~~~~~~~~l~~d~~G~l~v~~~~~~~~~~~~~~~~~~~~~~g~v~~~~~~~~~~~~~-  147 (243)
                      .|+.++ .+.  .+.+.    + ....+-|+.+||-|+++.+.+..               ..-.||+...  -..+.. 
T Consensus       152 sViiwn~~tF~~~~vl~----~-H~s~VKGvs~DP~Gky~ASqsdD---------------rtikvwrt~d--w~i~k~I  209 (942)
T KOG0973|consen  152 SVIIWNAKTFELLKVLR----G-HQSLVKGVSWDPIGKYFASQSDD---------------RTLKVWRTSD--WGIEKSI  209 (942)
T ss_pred             eEEEEccccceeeeeee----c-ccccccceEECCccCeeeeecCC---------------ceEEEEEccc--ceeeEee
Confidence            788888 444  22222    1 12456789999999988886541               2224555222  222222 


Q ss_pred             ecc------ccccceEEEcCCCCEEEEEEcC
Q 026118          148 LDG------LYFANGVALSEDERFLVVCESW  172 (243)
Q Consensus       148 ~~~------~~~~~gi~~~~dg~~l~v~~~~  172 (243)
                      .+.      ..+-..+-++|||++|-..+..
T Consensus       210 t~pf~~~~~~T~f~RlSWSPDG~~las~nA~  240 (942)
T KOG0973|consen  210 TKPFEESPLTTFFLRLSWSPDGHHLASPNAV  240 (942)
T ss_pred             ccchhhCCCcceeeecccCCCcCeecchhhc
Confidence            111      1123457888888877766543

>COG1520 FOG: WD40-like repeat [Function unknown]

Probab=95.76  E-value=0.36  Score=40.49  Aligned_cols=106  Identities=15%  Similarity=0.114  Sum_probs=59.5

Q ss_pred             EccCCCEEEEEeCCCcEEEEe-cCCcEEEEeccCCCcccCCccEEEcCCCcEEEEeCCCCCCcccccccccccCCCceEE
Q 026118           57 TTKENNVIIVCDSQQGLLKVS-EEGVTVLVSQFNGSQLRFANDVIEASDGSLYFTVSSTKFTPAEYYLDLVSGEPHGVLL  135 (243)
Q Consensus        57 ~~~~g~l~~v~~~~~gl~~~~-~~g~~~~~~~~~~~~~~~~~~l~~d~~G~l~v~~~~~~~~~~~~~~~~~~~~~~g~v~  135 (243)
                      ...+|++ |+......++.+| .++.......... .....++-....+|++|+++..                  +.+|
T Consensus        65 ~~~dg~v-~~~~~~G~i~A~d~~~g~~~W~~~~~~-~~~~~~~~~~~~~G~i~~g~~~------------------g~~y  124 (370)
T COG1520          65 ADGDGTV-YVGTRDGNIFALNPDTGLVKWSYPLLG-AVAQLSGPILGSDGKIYVGSWD------------------GKLY  124 (370)
T ss_pred             EeeCCeE-EEecCCCcEEEEeCCCCcEEecccCcC-cceeccCceEEeCCeEEEeccc------------------ceEE
Confidence            5678888 8886555699999 5553322221111 0011222234448999999643                  4799


Q ss_pred             EEeCCCCeeEEeecccc--ccceEEEcCCCCEEEEEEcCCCeEEEEEeecC
Q 026118          136 KYDPSTNQTSLVLDGLY--FANGVALSEDERFLVVCESWKFRCVKHFLKVS  184 (243)
Q Consensus       136 ~~~~~~~~~~~~~~~~~--~~~gi~~~~dg~~l~v~~~~~~~i~~~~~~~~  184 (243)
                      ++|..+|+.........  ...+-++-.++. +|+.. .++.++.++.+.+
T Consensus       125 ~ld~~~G~~~W~~~~~~~~~~~~~~v~~~~~-v~~~s-~~g~~~al~~~tG  173 (370)
T COG1520         125 ALDASTGTLVWSRNVGGSPYYASPPVVGDGT-VYVGT-DDGHLYALNADTG  173 (370)
T ss_pred             EEECCCCcEEEEEecCCCeEEecCcEEcCcE-EEEec-CCCeEEEEEccCC
Confidence            99997687665432222  111122223555 66664 4567887777643

>KOG1407 consensus WD40 repeat protein [Function unknown]

Probab=95.74  E-value=0.75  Score=36.20  Aligned_cols=107  Identities=13%  Similarity=0.139  Sum_probs=53.2

Q ss_pred             ceEEccCCCEEEEEeCCCcEEEE-e-cCCcEEEEeccCCCcccCCccEEEcCCCcEEEEeCCCCCCcccccccccccCCC
Q 026118           54 GLTTTKENNVIIVCDSQQGLLKV-S-EEGVTVLVSQFNGSQLRFANDVIEASDGSLYFTVSSTKFTPAEYYLDLVSGEPH  131 (243)
Q Consensus        54 ~i~~~~~g~l~~v~~~~~gl~~~-~-~~g~~~~~~~~~~~~~~~~~~l~~d~~G~l~v~~~~~~~~~~~~~~~~~~~~~~  131 (243)
                      -+...-++++ |+.+.+.|-+.+ . +. .+++.. +...+ ....+|.+||+|+.+.+.+.                 .
T Consensus       152 e~~w~~~nd~-Fflt~GlG~v~ILsyps-Lkpv~s-i~AH~-snCicI~f~p~GryfA~GsA-----------------D  210 (313)
T KOG1407|consen  152 EISWNNSNDL-FFLTNGLGCVEILSYPS-LKPVQS-IKAHP-SNCICIEFDPDGRYFATGSA-----------------D  210 (313)
T ss_pred             eeeecCCCCE-EEEecCCceEEEEeccc-cccccc-cccCC-cceEEEEECCCCceEeeccc-----------------c
Confidence            4566666777 555545443322 2 32 122111 11111 34457788999998876332                 2


Q ss_pred             ceEEEEeCCCCeeEEeecccccc-ceEEEcCCCCEEEEEEcCCCeEEEEEee
Q 026118          132 GVLLKYDPSTNQTSLVLDGLYFA-NGVALSEDERFLVVCESWKFRCVKHFLK  182 (243)
Q Consensus       132 g~v~~~~~~~~~~~~~~~~~~~~-~gi~~~~dg~~l~v~~~~~~~i~~~~~~  182 (243)
                      .-+-..|.+.---.+....+.+| ..|.|+-||+ +..+.+.+.-|-.....
T Consensus       211 AlvSLWD~~ELiC~R~isRldwpVRTlSFS~dg~-~lASaSEDh~IDIA~ve  261 (313)
T KOG1407|consen  211 ALVSLWDVDELICERCISRLDWPVRTLSFSHDGR-MLASASEDHFIDIAEVE  261 (313)
T ss_pred             ceeeccChhHhhhheeeccccCceEEEEeccCcc-eeeccCccceEEeEecc
Confidence            23444555422122223333333 5688999998 44444445555444433

>KOG4649 consensus PQQ (pyrrolo-quinoline quinone) repeat protein [Secondary metabolites biosynthesis, transport and catabolism]

Probab=95.74  E-value=0.76  Score=36.27  Aligned_cols=148  Identities=13%  Similarity=0.064  Sum_probs=79.1

Q ss_pred             CCcccEEEcCCCcEEEEeCCCcEEEEc-cCCceeEecccCCcccc-ceEEccCCCEEEEEeCCCcEEEEe-cCC-cEEEE
Q 026118           10 NHPEDVSVDGNGVLYTATGDGWIKRMH-PNGTWEDWHQVGSQSLL-GLTTTKENNVIIVCDSQQGLLKVS-EEG-VTVLV   85 (243)
Q Consensus        10 ~~p~~i~~d~~g~l~~~~~~~~i~~~~-~~g~~~~~~~~~~~~~~-~i~~~~~g~l~~v~~~~~gl~~~~-~~g-~~~~~   85 (243)
                      ..|--++-|..-.+|++...+.+..+| ..|++..-..-+.+... .+..   |+++.++-...++|.++ .+| .-...
T Consensus        13 aspLVV~~dskT~v~igSHs~~~~avd~~sG~~~We~ilg~RiE~sa~vv---gdfVV~GCy~g~lYfl~~~tGs~~w~f   89 (354)
T KOG4649|consen   13 ASPLVVCNDSKTLVVIGSHSGIVIAVDPQSGNLIWEAILGVRIECSAIVV---GDFVVLGCYSGGLYFLCVKTGSQIWNF   89 (354)
T ss_pred             CCcEEEecCCceEEEEecCCceEEEecCCCCcEEeehhhCceeeeeeEEE---CCEEEEEEccCcEEEEEecchhheeee
Confidence            356556666666788998888888998 46665432221122220 2332   45535555667788888 777 22222


Q ss_pred             eccCCCcccCCccEEEcCCCc-EEEEeCCCCCCcccccccccccCCCceEEEEeCCCCeeE-EeeccccccceEEEcC-C
Q 026118           86 SQFNGSQLRFANDVIEASDGS-LYFTVSSTKFTPAEYYLDLVSGEPHGVLLKYDPSTNQTS-LVLDGLYFANGVALSE-D  162 (243)
Q Consensus        86 ~~~~~~~~~~~~~l~~d~~G~-l~v~~~~~~~~~~~~~~~~~~~~~~g~v~~~~~~~~~~~-~~~~~~~~~~gi~~~~-d  162 (243)
                      ...+.-   .. .-..|.++. +|.+.                  .++..|.+|+.+..-. ...-+...-.+.++++ +
T Consensus        90 ~~~~~v---k~-~a~~d~~~glIycgs------------------hd~~~yalD~~~~~cVykskcgG~~f~sP~i~~g~  147 (354)
T KOG4649|consen   90 VILETV---KV-RAQCDFDGGLIYCGS------------------HDGNFYALDPKTYGCVYKSKCGGGTFVSPVIAPGD  147 (354)
T ss_pred             eehhhh---cc-ceEEcCCCceEEEec------------------CCCcEEEecccccceEEecccCCceeccceecCCC
Confidence            111110   11 114567655 55553                  2346777777643211 1111122233456667 5


Q ss_pred             CCEEEEEEcCCCeEEEEEeecC
Q 026118          163 ERFLVVCESWKFRCVKHFLKVS  184 (243)
Q Consensus       163 g~~l~v~~~~~~~i~~~~~~~~  184 (243)
                      +. ||++.. .+.+.+.++++.
T Consensus       148 ~s-ly~a~t-~G~vlavt~~~~  167 (354)
T KOG4649|consen  148 GS-LYAAIT-AGAVLAVTKNPY  167 (354)
T ss_pred             ce-EEEEec-cceEEEEccCCC
Confidence            55 999865 467777766543

>KOG0296 consensus Angio-associated migratory cell protein (contains WD40 repeats) [Function unknown]

Probab=95.65  E-value=1  Score=37.06  Aligned_cols=205  Identities=11%  Similarity=0.071  Sum_probs=103.4

Q ss_pred             cCCcccEEEcCCCcEE-EEeCCCcEEEEc-cCCceeEecccCCccccceEEccCCCEEEEEeCCCcEEEEe-cCC-cEEE
Q 026118            9 VNHPEDVSVDGNGVLY-TATGDGWIKRMH-PNGTWEDWHQVGSQSLLGLTTTKENNVIIVCDSQQGLLKVS-EEG-VTVL   84 (243)
Q Consensus         9 ~~~p~~i~~d~~g~l~-~~~~~~~i~~~~-~~g~~~~~~~~~~~~~~~i~~~~~g~l~~v~~~~~gl~~~~-~~g-~~~~   84 (243)
                      +..-+.+.+-|.+.++ .|..+|.++.+. +++...........+.+.=.|-|+|+.+..+...+-|..++ .++ ....
T Consensus       148 ~~dieWl~WHp~a~illAG~~DGsvWmw~ip~~~~~kv~~Gh~~~ct~G~f~pdGKr~~tgy~dgti~~Wn~ktg~p~~~  227 (399)
T KOG0296|consen  148 VEDIEWLKWHPRAHILLAGSTDGSVWMWQIPSQALCKVMSGHNSPCTCGEFIPDGKRILTGYDDGTIIVWNPKTGQPLHK  227 (399)
T ss_pred             cCceEEEEecccccEEEeecCCCcEEEEECCCcceeeEecCCCCCcccccccCCCceEEEEecCceEEEEecCCCceeEE
Confidence            3445566667777654 555888888887 55343333232233331234568899844444333466677 566 2221


Q ss_pred             EeccCCCc-----ccCCccEEE--cCCCcEEEE----------eCCC--------CCCcc-------cccccc-cccCCC
Q 026118           85 VSQFNGSQ-----LRFANDVIE--ASDGSLYFT----------VSST--------KFTPA-------EYYLDL-VSGEPH  131 (243)
Q Consensus        85 ~~~~~~~~-----~~~~~~l~~--d~~G~l~v~----------~~~~--------~~~~~-------~~~~~~-~~~~~~  131 (243)
                      ....++..     .+......+  ..++.+++.          +.+.        .....       +....+ +.+...
T Consensus       228 ~~~~e~~~~~~~~~~~~~~~~~~g~~e~~~~~~~~~sgKVv~~~n~~~~~l~~~~e~~~esve~~~~ss~lpL~A~G~vd  307 (399)
T KOG0296|consen  228 ITQAEGLELPCISLNLAGSTLTKGNSEGVACGVNNGSGKVVNCNNGTVPELKPSQEELDESVESIPSSSKLPLAACGSVD  307 (399)
T ss_pred             ecccccCcCCccccccccceeEeccCCccEEEEccccceEEEecCCCCccccccchhhhhhhhhcccccccchhhccccc
Confidence            11111110     111111111  123333333          2210        00000       000111 124556


Q ss_pred             ceEEEEeCCCCeeEEeeccccccceEEEcCCCCEEEEEEcCCCeEEEEEeecCCCcceEEeccCCCCCCCceEECCCCCE
Q 026118          132 GVLLKYDPSTNQTSLVLDGLYFANGVALSEDERFLVVCESWKFRCVKHFLKVSGRTDREIFIDNLPGGPDNVNLARDGSF  211 (243)
Q Consensus       132 g~v~~~~~~~~~~~~~~~~~~~~~gi~~~~dg~~l~v~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~i~~d~~G~l  211 (243)
                      |.|..||....++|...........+.|.+ ..+|+.+ ..++.|..+|...+.+.  ..+ .+-.-..-.+++.+++++
T Consensus       308 G~i~iyD~a~~~~R~~c~he~~V~~l~w~~-t~~l~t~-c~~g~v~~wDaRtG~l~--~~y-~GH~~~Il~f~ls~~~~~  382 (399)
T KOG0296|consen  308 GTIAIYDLAASTLRHICEHEDGVTKLKWLN-TDYLLTA-CANGKVRQWDARTGQLK--FTY-TGHQMGILDFALSPQKRL  382 (399)
T ss_pred             ceEEEEecccchhheeccCCCceEEEEEcC-cchheee-ccCceEEeeeccccceE--EEE-ecCchheeEEEEcCCCcE
Confidence            788889988777776655444556678877 4557766 46788999987653221  111 111112344788899998


Q ss_pred             EEEEecC
Q 026118          212 WISIIKM  218 (243)
Q Consensus       212 wv~~~~~  218 (243)
                      .|.....
T Consensus       383 vvT~s~D  389 (399)
T KOG0296|consen  383 VVTVSDD  389 (399)
T ss_pred             EEEecCC
Confidence            8866543

>PF14583 Pectate_lyase22: Oligogalacturonate lyase; PDB: 3C5M_C 3PE7_A

Probab=95.65  E-value=0.19  Score=42.02  Aligned_cols=84  Identities=18%  Similarity=0.049  Sum_probs=46.6

Q ss_pred             CceEEEEeCCCCeeEEeeccc-cccceEEEcCCCCEEEEEEcCCCeEEEEEeecCCCcceEEeccCCCCCC--CceEECC
Q 026118          131 HGVLLKYDPSTNQTSLVLDGL-YFANGVALSEDERFLVVCESWKFRCVKHFLKVSGRTDREIFIDNLPGGP--DNVNLAR  207 (243)
Q Consensus       131 ~g~v~~~~~~~~~~~~~~~~~-~~~~gi~~~~dg~~l~v~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~--~~i~~d~  207 (243)
                      ...+|.+|.++++.+++.... ....|..++++.+.+|... ...+|.++++++.  ....++. ....+.  .....++
T Consensus        59 ~~nly~lDL~t~~i~QLTdg~g~~~~g~~~s~~~~~~~Yv~-~~~~l~~vdL~T~--e~~~vy~-~p~~~~g~gt~v~n~  134 (386)
T PF14583_consen   59 NRNLYLLDLATGEITQLTDGPGDNTFGGFLSPDDRALYYVK-NGRSLRRVDLDTL--EERVVYE-VPDDWKGYGTWVANS  134 (386)
T ss_dssp             S-EEEEEETTT-EEEE---SS-B-TTT-EE-TTSSEEEEEE-TTTEEEEEETTT----EEEEEE---TTEEEEEEEEE-T
T ss_pred             CcceEEEEcccCEEEECccCCCCCccceEEecCCCeEEEEE-CCCeEEEEECCcC--cEEEEEE-CCcccccccceeeCC
Confidence            447999999999999987643 2234677888888876553 3468999988753  2323332 122222  2344577


Q ss_pred             CCCEEEEEecC
Q 026118          208 DGSFWISIIKM  218 (243)
Q Consensus       208 ~G~lwv~~~~~  218 (243)
                      +++.+++....
T Consensus       135 d~t~~~g~e~~  145 (386)
T PF14583_consen  135 DCTKLVGIEIS  145 (386)
T ss_dssp             TSSEEEEEEEE
T ss_pred             CccEEEEEEEe
Confidence            88888887543

>TIGR03118 PEPCTERM_chp_1 conserved hypothetical protein TIGR03118

Probab=95.63  E-value=0.94  Score=36.60  Aligned_cols=123  Identities=16%  Similarity=0.102  Sum_probs=72.1

Q ss_pred             cceEEcc--CCCEEEEEeCCCc-EEEEecCCcEEEE--eccCC---CcccCCccEEEcCCCcEEEEeCCCCCCccccc-c
Q 026118           53 LGLTTTK--ENNVIIVCDSQQG-LLKVSEEGVTVLV--SQFNG---SQLRFANDVIEASDGSLYFTVSSTKFTPAEYY-L  123 (243)
Q Consensus        53 ~~i~~~~--~g~l~~v~~~~~g-l~~~~~~g~~~~~--~~~~~---~~~~~~~~l~~d~~G~l~v~~~~~~~~~~~~~-~  123 (243)
                      .|+++..  .+++||.++...+ |-++|.+ +.++.  .....   +.--.|..|.. -.++|||+     |+..... .
T Consensus       141 kGLAi~~~~~~~~LYaadF~~g~IDVFd~~-f~~~~~~g~F~DP~iPagyAPFnIqn-ig~~lyVt-----YA~qd~~~~  213 (336)
T TIGR03118       141 KGLAVGPTGGGDYLYAANFRQGRIDVFKGS-FRPPPLPGSFIDPALPAGYAPFNVQN-LGGTLYVT-----YAQQDADRN  213 (336)
T ss_pred             eeeEEeecCCCceEEEeccCCCceEEecCc-cccccCCCCccCCCCCCCCCCcceEE-ECCeEEEE-----EEecCCccc
Confidence            3566653  3556699887644 5556522 11111  11111   11113445532 35789998     4433222 2


Q ss_pred             cccccCCCceEEEEeCCCCeeEEeec--cccccceEEEcC------CCCEEEEEEcCCCeEEEEEeec
Q 026118          124 DLVSGEPHGVLLKYDPSTNQTSLVLD--GLYFANGVALSE------DERFLVVCESWKFRCVKHFLKV  183 (243)
Q Consensus       124 ~~~~~~~~g~v~~~~~~~~~~~~~~~--~~~~~~gi~~~~------dg~~l~v~~~~~~~i~~~~~~~  183 (243)
                      +-..+...|-|-.+|+++.-++++..  .+..|=||++.|      .|. |.|.+..+++|-.||+..
T Consensus       214 d~v~G~G~G~VdvFd~~G~l~~r~as~g~LNaPWG~a~APa~FG~~sg~-lLVGNFGDG~InaFD~~s  280 (336)
T TIGR03118       214 DEVAGAGLGYVNVFTLNGQLLRRVASSGRLNAPWGLAIAPESFGSLSGA-LLVGNFGDGTINAYDPQS  280 (336)
T ss_pred             ccccCCCcceEEEEcCCCcEEEEeccCCcccCCceeeeChhhhCCCCCC-eEEeecCCceeEEecCCC
Confidence            22234556789999999544555643  356788888865      455 999999999999999864

This model describes and uncharacterized conserved hypothetical protein. Members are found with the C-terminal putative exosortase interaction domain, PEP-CTERM, in Nitrosospira multiformis, Rhodoferax ferrireducens, Solibacter usitatus Ellin6076, and Acidobacteria bacterium Ellin345. It is found without the PEP-CTERM domain in several other species, including Burkholderia ambifaria, Gloeobacter violaceus PCC 7421, and three copies in the Acanthamoeba polyphaga mimivirus.

>PRK13616 lipoprotein LpqB; Provisional

Probab=95.59  E-value=1.6  Score=39.10  Aligned_cols=153  Identities=15%  Similarity=0.058  Sum_probs=79.1

Q ss_pred             CCcccEEEcCCCc--EEEEe-------CCCcEEEEccCCceeEecccCCccccceEEccCCCEEEEEeCCCcEEEEe-cC
Q 026118           10 NHPEDVSVDGNGV--LYTAT-------GDGWIKRMHPNGTWEDWHQVGSQSLLGLTTTKENNVIIVCDSQQGLLKVS-EE   79 (243)
Q Consensus        10 ~~p~~i~~d~~g~--l~~~~-------~~~~i~~~~~~g~~~~~~~~~~~~~~~i~~~~~g~l~~v~~~~~gl~~~~-~~   79 (243)
                      ..+.++++.++|.  .|+..       ....|+..+..+....+..  +...+...++++|+.+|+...+..+.++. .+
T Consensus       350 ~~vsspaiSpdG~~vA~v~~~~~~~~d~~s~Lwv~~~gg~~~~lt~--g~~~t~PsWspDG~~lw~v~dg~~~~~v~~~~  427 (591)
T PRK13616        350 GNITSAALSRSGRQVAAVVTLGRGAPDPASSLWVGPLGGVAVQVLE--GHSLTRPSWSLDADAVWVVVDGNTVVRVIRDP  427 (591)
T ss_pred             cCcccceECCCCCEEEEEEeecCCCCCcceEEEEEeCCCcceeeec--CCCCCCceECCCCCceEEEecCcceEEEeccC
Confidence            4566777888774  44442       1224555554444433322  12233677889977657775333344443 22


Q ss_pred             C-cEEEEeccCCC-----cccCCccEEEcCCCc-EEEEeCCCCCCcccccccccccCCCceEEE---EeCCCCeeEE---
Q 026118           80 G-VTVLVSQFNGS-----QLRFANDVIEASDGS-LYFTVSSTKFTPAEYYLDLVSGEPHGVLLK---YDPSTNQTSL---  146 (243)
Q Consensus        80 g-~~~~~~~~~~~-----~~~~~~~l~~d~~G~-l~v~~~~~~~~~~~~~~~~~~~~~~g~v~~---~~~~~~~~~~---  146 (243)
                      + -........+.     ....+..+.+++||. +.+..                   .+.|+.   ...+.|+.+.   
T Consensus       428 ~~gql~~~~vd~ge~~~~~~g~Issl~wSpDG~RiA~i~-------------------~g~v~Va~Vvr~~~G~~~l~~~  488 (591)
T PRK13616        428 ATGQLARTPVDASAVASRVPGPISELQLSRDGVRAAMII-------------------GGKVYLAVVEQTEDGQYALTNP  488 (591)
T ss_pred             CCceEEEEeccCchhhhccCCCcCeEEECCCCCEEEEEE-------------------CCEEEEEEEEeCCCCceeeccc
Confidence            2 11111111110     013477889999996 44431                   124444   3334454222   


Q ss_pred             --eeccccc-cceEEEcCCCCEEEEEEc-CCCeEEEEEeecC
Q 026118          147 --VLDGLYF-ANGVALSEDERFLVVCES-WKFRCVKHFLKVS  184 (243)
Q Consensus       147 --~~~~~~~-~~gi~~~~dg~~l~v~~~-~~~~i~~~~~~~~  184 (243)
                        +...... +..+.|..++. |++... .+..++++.+++.
T Consensus       489 ~~l~~~l~~~~~~l~W~~~~~-L~V~~~~~~~~v~~v~vDG~  529 (591)
T PRK13616        489 REVGPGLGDTAVSLDWRTGDS-LVVGRSDPEHPVWYVNLDGS  529 (591)
T ss_pred             EEeecccCCccccceEecCCE-EEEEecCCCCceEEEecCCc
Confidence              2333333 47788988888 666544 3355888888764

>KOG0306 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]

Probab=95.48  E-value=1.9  Score=39.01  Aligned_cols=143  Identities=10%  Similarity=-0.003  Sum_probs=80.9

Q ss_pred             ccccceEEccCCCEEEEEeCCCc--EEEEecCCcEEEEeccCCCcccCCccEEEcCCCcEEEEeCCCCCCcccccccccc
Q 026118           50 QSLLGLTTTKENNVIIVCDSQQG--LLKVSEEGVTVLVSQFNGSQLRFANDVIEASDGSLYFTVSSTKFTPAEYYLDLVS  127 (243)
Q Consensus        50 ~~~~~i~~~~~g~l~~v~~~~~g--l~~~~~~g~~~~~~~~~~~~~~~~~~l~~d~~G~l~v~~~~~~~~~~~~~~~~~~  127 (243)
                      ... ++.++|||++|.|+-.+.-  ||.+|. -  .+.....|... .+-+|.+++|+.+.+|.+.              
T Consensus       510 dvL-~v~~Spdgk~LaVsLLdnTVkVyflDt-l--KFflsLYGHkL-PV~smDIS~DSklivTgSA--------------  570 (888)
T KOG0306|consen  510 DVL-CVSVSPDGKLLAVSLLDNTVKVYFLDT-L--KFFLSLYGHKL-PVLSMDISPDSKLIVTGSA--------------  570 (888)
T ss_pred             cEE-EEEEcCCCcEEEEEeccCeEEEEEecc-e--eeeeeeccccc-ceeEEeccCCcCeEEeccC--------------
Confidence            345 8889999999666665443  444442 1  11112222222 2458889999999998543              


Q ss_pred             cCCCceEEEEeCCCCeeEEe-eccccccceEEEcCCCCEEEEEEcCCCeEEEEEeecCCCcceEEeccCCCCCCCceEEC
Q 026118          128 GEPHGVLLKYDPSTNQTSLV-LDGLYFANGVALSEDERFLVVCESWKFRCVKHFLKVSGRTDREIFIDNLPGGPDNVNLA  206 (243)
Q Consensus       128 ~~~~g~v~~~~~~~~~~~~~-~~~~~~~~gi~~~~dg~~l~v~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~i~~d  206 (243)
                       ..+-.||-+|-  |.-.+. .........+.|-|+.. ++++-..++.|-.||-.  .+...+.+.. -..-...+++.
T Consensus       571 -DKnVKiWGLdF--GDCHKS~fAHdDSvm~V~F~P~~~-~FFt~gKD~kvKqWDg~--kFe~iq~L~~-H~~ev~cLav~  643 (888)
T KOG0306|consen  571 -DKNVKIWGLDF--GDCHKSFFAHDDSVMSVQFLPKTH-LFFTCGKDGKVKQWDGE--KFEEIQKLDG-HHSEVWCLAVS  643 (888)
T ss_pred             -CCceEEecccc--chhhhhhhcccCceeEEEEcccce-eEEEecCcceEEeechh--hhhhheeecc-chheeeeeEEc
Confidence             13335665554  433222 11122345678888665 77776667777777633  3333333321 11224558888


Q ss_pred             CCCCEEEEEecC
Q 026118          207 RDGSFWISIIKM  218 (243)
Q Consensus       207 ~~G~lwv~~~~~  218 (243)
                      ++|...|+....
T Consensus       644 ~~G~~vvs~shD  655 (888)
T KOG0306|consen  644 PNGSFVVSSSHD  655 (888)
T ss_pred             CCCCeEEeccCC
Confidence            888877766553

>KOG0294 consensus WD40 repeat-containing protein [Function unknown]

Probab=95.45  E-value=1.1  Score=36.21  Aligned_cols=133  Identities=14%  Similarity=0.058  Sum_probs=72.7

Q ss_pred             CCCcEEEEcc--CCceeEecccCCccccceEEccCC---CEEEEEeCCCcEEEEecCCcEEEEeccCCCcccCCccEEEc
Q 026118           28 GDGWIKRMHP--NGTWEDWHQVGSQSLLGLTTTKEN---NVIIVCDSQQGLLKVSEEGVTVLVSQFNGSQLRFANDVIEA  102 (243)
Q Consensus        28 ~~~~i~~~~~--~g~~~~~~~~~~~~~~~i~~~~~g---~l~~v~~~~~gl~~~~~~g~~~~~~~~~~~~~~~~~~l~~d  102 (243)
                      .+..|+.+|-  ..+.-......+..+ .+.|++.-   +| ..+..++.+..++..-+..+.. ..+.. ..++++++.
T Consensus        61 sDetI~IYDm~k~~qlg~ll~Hagsit-aL~F~~~~S~shL-lS~sdDG~i~iw~~~~W~~~~s-lK~H~-~~Vt~lsiH  136 (362)
T KOG0294|consen   61 SDETIHIYDMRKRKQLGILLSHAGSIT-ALKFYPPLSKSHL-LSGSDDGHIIIWRVGSWELLKS-LKAHK-GQVTDLSIH  136 (362)
T ss_pred             CCCcEEEEeccchhhhcceeccccceE-EEEecCCcchhhe-eeecCCCcEEEEEcCCeEEeee-ecccc-cccceeEec
Confidence            6778988882  222222222234445 67776544   55 5655444566665322322221 11111 237899999


Q ss_pred             CCCcEEEEeCCCCCCcccccccccccCCCceEEEEeCCCCeeEEeeccccccceEEEcCCCCEEEEEEcCCCeEEEEEee
Q 026118          103 SDGSLYFTVSSTKFTPAEYYLDLVSGEPHGVLLKYDPSTNQTSLVLDGLYFANGVALSEDERFLVVCESWKFRCVKHFLK  182 (243)
Q Consensus       103 ~~G~l~v~~~~~~~~~~~~~~~~~~~~~~g~v~~~~~~~~~~~~~~~~~~~~~gi~~~~dg~~l~v~~~~~~~i~~~~~~  182 (243)
                      |.|.|-++..+.                 ..+-..|.-.|+......=...+.-+.|+|.|.+.++...  +.|-.|..+
T Consensus       137 PS~KLALsVg~D-----------------~~lr~WNLV~Gr~a~v~~L~~~at~v~w~~~Gd~F~v~~~--~~i~i~q~d  197 (362)
T KOG0294|consen  137 PSGKLALSVGGD-----------------QVLRTWNLVRGRVAFVLNLKNKATLVSWSPQGDHFVVSGR--NKIDIYQLD  197 (362)
T ss_pred             CCCceEEEEcCC-----------------ceeeeehhhcCccceeeccCCcceeeEEcCCCCEEEEEec--cEEEEEecc
Confidence            999988875431                 2333344444433222222234455899999997777754  566666654


Q ss_pred             c
Q 026118          183 V  183 (243)
Q Consensus       183 ~  183 (243)
                      .
T Consensus       198 ~  198 (362)
T KOG0294|consen  198 N  198 (362)
T ss_pred             c
Confidence            3

>KOG0284 consensus Polyadenylation factor I complex, subunit PFS2 [RNA processing and modification]

Probab=95.40  E-value=0.23  Score=41.26  Aligned_cols=144  Identities=15%  Similarity=0.156  Sum_probs=85.7

Q ss_pred             EEEcCCC-cEEEEeCCCcEEEEccCCceeEec---ccCCccccceEEccCCCEEEEEeCCCcEEEEe-cCC--cEEEEec
Q 026118           15 VSVDGNG-VLYTATGDGWIKRMHPNGTWEDWH---QVGSQSLLGLTTTKENNVIIVCDSQQGLLKVS-EEG--VTVLVSQ   87 (243)
Q Consensus        15 i~~d~~g-~l~~~~~~~~i~~~~~~g~~~~~~---~~~~~~~~~i~~~~~g~l~~v~~~~~gl~~~~-~~g--~~~~~~~   87 (243)
                      +.+.++| +|.+++..|..-.++  |..-.+.   .....+..+|..+.+|.. .|....+|.+++- ++-  ++.+.. 
T Consensus       102 v~WtPeGRRLltgs~SGEFtLWN--g~~fnFEtilQaHDs~Vr~m~ws~~g~w-miSgD~gG~iKyWqpnmnnVk~~~a-  177 (464)
T KOG0284|consen  102 VRWTPEGRRLLTGSQSGEFTLWN--GTSFNFETILQAHDSPVRTMKWSHNGTW-MISGDKGGMIKYWQPNMNNVKIIQA-  177 (464)
T ss_pred             EEEcCCCceeEeecccccEEEec--CceeeHHHHhhhhcccceeEEEccCCCE-EEEcCCCceEEecccchhhhHHhhH-
Confidence            5556777 588888777777774  3322222   222345557888899987 4444456777776 432  332211 


Q ss_pred             cCCCcccCCccEEEcCCCcEEEEeCCCCCCcccccccccccCCCceEEEEeCCCCeeEEee-ccccccceEEEcCCCCEE
Q 026118           88 FNGSQLRFANDVIEASDGSLYFTVSSTKFTPAEYYLDLVSGEPHGVLLKYDPSTNQTSLVL-DGLYFANGVALSEDERFL  166 (243)
Q Consensus        88 ~~~~~~~~~~~l~~d~~G~l~v~~~~~~~~~~~~~~~~~~~~~~g~v~~~~~~~~~~~~~~-~~~~~~~gi~~~~dg~~l  166 (243)
                         .....+.+++++|...-|++-+.                 .+.|...|-...+.+++. ....-+..+.++|... |
T Consensus       178 ---hh~eaIRdlafSpnDskF~t~Sd-----------------Dg~ikiWdf~~~kee~vL~GHgwdVksvdWHP~kg-L  236 (464)
T KOG0284|consen  178 ---HHAEAIRDLAFSPNDSKFLTCSD-----------------DGTIKIWDFRMPKEERVLRGHGWDVKSVDWHPTKG-L  236 (464)
T ss_pred             ---hhhhhhheeccCCCCceeEEecC-----------------CCeEEEEeccCCchhheeccCCCCcceeccCCccc-e
Confidence               11246788999997788887543                 344544454333333333 3345577899999877 6


Q ss_pred             EEEEcCCCeEEEEEeec
Q 026118          167 VVCESWKFRCVKHFLKV  183 (243)
Q Consensus       167 ~v~~~~~~~i~~~~~~~  183 (243)
                      .++...++-|-.+|+..
T Consensus       237 iasgskDnlVKlWDprS  253 (464)
T KOG0284|consen  237 IASGSKDNLVKLWDPRS  253 (464)
T ss_pred             eEEccCCceeEeecCCC
Confidence            65555556666677653

>TIGR03075 PQQ_enz_alc_DH PQQ-dependent dehydrogenase, methanol/ethanol family

Probab=95.33  E-value=1.9  Score=38.19  Aligned_cols=84  Identities=15%  Similarity=0.171  Sum_probs=46.3

Q ss_pred             CceEEEEeCCCCeeEEeec-cccccceEEEcCCCCEEEEEEcCCCeEEEEEeecCCCcceEEeccCCCCCCCceEECCCC
Q 026118          131 HGVLLKYDPSTNQTSLVLD-GLYFANGVALSEDERFLVVCESWKFRCVKHFLKVSGRTDREIFIDNLPGGPDNVNLARDG  209 (243)
Q Consensus       131 ~g~v~~~~~~~~~~~~~~~-~~~~~~gi~~~~dg~~l~v~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~i~~d~~G  209 (243)
                      .+.|..+|+.+|+...... ......+... -.+..+|+ ...++.++.+|..++..-....+.....+.|  |....+|
T Consensus       440 ~g~l~AiD~~tGk~~W~~~~~~p~~~~~l~-t~g~lvf~-g~~~G~l~a~D~~TGe~lw~~~~g~~~~a~P--~ty~~~G  515 (527)
T TIGR03075       440 MGSLIAWDPITGKIVWEHKEDFPLWGGVLA-TAGDLVFY-GTLEGYFKAFDAKTGEELWKFKTGSGIVGPP--VTYEQDG  515 (527)
T ss_pred             ceeEEEEeCCCCceeeEecCCCCCCCcceE-ECCcEEEE-ECCCCeEEEEECCCCCEeEEEeCCCCceecC--EEEEeCC
Confidence            5679999999997765322 2221123222 24553444 4557889999987643222111111111223  5545689


Q ss_pred             CEEEEEecC
Q 026118          210 SFWISIIKM  218 (243)
Q Consensus       210 ~lwv~~~~~  218 (243)
                      ++||....+
T Consensus       516 ~qYv~~~~G  524 (527)
T TIGR03075       516 KQYVAVLSG  524 (527)
T ss_pred             EEEEEEEec
Confidence            999987654

This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Genes in this family often are found adjacent to the PQQ biosynthesis genes themselves. An unusual, strained disulfide bond between adjacent Cys residues contributes to PQQ-binding, as does a Trp residue that is part of a PQQ enzyme repeat (see pfam01011). Characterized members include the dehydrogenase subunit of a membrane-anchored, three subunit alcohol (ethanol) dehydrogenase of Gluconobacter suboxydans, a homodimeric ethanol dehydrogenase in Pseudomonas aeruginosa, and the large subunit of an alpha2/beta2 heterotetrameric methanol dehydrogenase in Methylobacterium extorquens.

>KOG4378 consensus Nuclear protein COP1 [Signal transduction mechanisms]

Probab=95.29  E-value=1.3  Score=38.15  Aligned_cols=137  Identities=12%  Similarity=0.074  Sum_probs=71.0

Q ss_pred             CCCcEEEEc-cCC-ceeEecccCCccccceEEccCCCEEEEEeCCCc-EEEEecCCcEEEEeccCCCcccCCccEEEcCC
Q 026118           28 GDGWIKRMH-PNG-TWEDWHQVGSQSLLGLTTTKENNVIIVCDSQQG-LLKVSEEGVTVLVSQFNGSQLRFANDVIEASD  104 (243)
Q Consensus        28 ~~~~i~~~~-~~g-~~~~~~~~~~~~~~~i~~~~~g~l~~v~~~~~g-l~~~~~~g~~~~~~~~~~~~~~~~~~l~~d~~  104 (243)
                      ..|.|.... ..+ +...+....+....-+.+++..+.|.....++| |..+|.+|..++... ......-..+|++.|.
T Consensus       141 ~gGdiiih~~~t~~~tt~f~~~sgqsvRll~ys~skr~lL~~asd~G~VtlwDv~g~sp~~~~-~~~HsAP~~gicfsps  219 (673)
T KOG4378|consen  141 DGGDIIIHGTKTKQKTTTFTIDSGQSVRLLRYSPSKRFLLSIASDKGAVTLWDVQGMSPIFHA-SEAHSAPCRGICFSPS  219 (673)
T ss_pred             cCCcEEEEecccCccccceecCCCCeEEEeecccccceeeEeeccCCeEEEEeccCCCcccch-hhhccCCcCcceecCC
Confidence            445555554 222 233333322332213455655554333333455 455665663333321 1111123468899997


Q ss_pred             CcEEEEeCCCCCCcccccccccccCCCceEEEEeCCCCeeEEeecccccc-ceEEEcCCCCEEEEEEcCCCeEEEEEeec
Q 026118          105 GSLYFTVSSTKFTPAEYYLDLVSGEPHGVLLKYDPSTNQTSLVLDGLYFA-NGVALSEDERFLVVCESWKFRCVKHFLKV  183 (243)
Q Consensus       105 G~l~v~~~~~~~~~~~~~~~~~~~~~~g~v~~~~~~~~~~~~~~~~~~~~-~gi~~~~dg~~l~v~~~~~~~i~~~~~~~  183 (243)
                      ....++.-+                ..-+|+.||....+...-.. ...| ..++|.++|.+|.+. ..++.|+.||...
T Consensus       220 ne~l~vsVG----------------~Dkki~~yD~~s~~s~~~l~-y~~Plstvaf~~~G~~L~aG-~s~G~~i~YD~R~  281 (673)
T KOG4378|consen  220 NEALLVSVG----------------YDKKINIYDIRSQASTDRLT-YSHPLSTVAFSECGTYLCAG-NSKGELIAYDMRS  281 (673)
T ss_pred             ccceEEEec----------------ccceEEEeecccccccceee-ecCCcceeeecCCceEEEee-cCCceEEEEeccc
Confidence            654444322                23478999976433221111 1222 468999999866655 5678999999864

>TIGR02276 beta_rpt_yvtn 40-residue YVTN family beta-propeller repeat

Probab=95.28  E-value=0.11  Score=28.23  Aligned_cols=42  Identities=17%  Similarity=-0.027  Sum_probs=28.4

Q ss_pred             CCCCEEEEEEcCCCeEEEEEeecCCCcceEEeccCCCCCCCceEEC
Q 026118          161 EDERFLVVCESWKFRCVKHFLKVSGRTDREIFIDNLPGGPDNVNLA  206 (243)
Q Consensus       161 ~dg~~l~v~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~i~~d  206 (243)
                      |++++||+++...++|..+|....  .....+.  ....|.+|+++
T Consensus         1 pd~~~lyv~~~~~~~v~~id~~~~--~~~~~i~--vg~~P~~i~~~   42 (42)
T TIGR02276         1 PDGTKLYVTNSGSNTVSVIDTATN--KVIATIP--VGGYPFGVAVS   42 (42)
T ss_pred             CCCCEEEEEeCCCCEEEEEECCCC--eEEEEEE--CCCCCceEEeC
Confidence            578889999998999999987532  2222221  23467777764

This repeat of about 40 amino acids is found in up to 14 copies per protein. Archaea Methanosarcina mazei and Methanosarcina acetivorans each have over 10 genes that encode tandem copies of this repeat, which is also found in other species. PSIPRED predicts with high confidence that each 40-residue repeats contains four beta strands. This model overlaps somewhat with the NHL repeat (Pfam pfam01436) and also shows sequence similarity to the WD domain, G-beta repeat (Pfam pfam00400).

>KOG0310 consensus Conserved WD40 repeat-containing protein [Function unknown]

Probab=95.23  E-value=1.7  Score=37.04  Aligned_cols=150  Identities=13%  Similarity=0.070  Sum_probs=75.6

Q ss_pred             cccEEEcCCCcEEEEe-CCCcEEEEccCCc-eeEecccCCccccceEEccCCCEEEEEeCCCcEEEEe-cCC-cEEEEec
Q 026118           12 PEDVSVDGNGVLYTAT-GDGWIKRMHPNGT-WEDWHQVGSQSLLGLTTTKENNVIIVCDSQQGLLKVS-EEG-VTVLVSQ   87 (243)
Q Consensus        12 p~~i~~d~~g~l~~~~-~~~~i~~~~~~g~-~~~~~~~~~~~~~~i~~~~~g~l~~v~~~~~gl~~~~-~~g-~~~~~~~   87 (243)
                      ..++.+-.||+|..+. ..|-|-.+|..-+ +.+.......|..-..|.++++.+++...++.+.++. .++ ..++.  
T Consensus        71 v~s~~fR~DG~LlaaGD~sG~V~vfD~k~r~iLR~~~ah~apv~~~~f~~~d~t~l~s~sDd~v~k~~d~s~a~v~~~--  148 (487)
T KOG0310|consen   71 VYSVDFRSDGRLLAAGDESGHVKVFDMKSRVILRQLYAHQAPVHVTKFSPQDNTMLVSGSDDKVVKYWDLSTAYVQAE--  148 (487)
T ss_pred             eeEEEeecCCeEEEccCCcCcEEEeccccHHHHHHHhhccCceeEEEecccCCeEEEecCCCceEEEEEcCCcEEEEE--
Confidence            3456666777766544 4555666651111 1110111123332566777777646666567777776 444 32211  


Q ss_pred             cCCCcccCCccEEEcC-CCcEEEEeCCCCCCcccccccccccCCCceEEEEeCCCCeeEEe-eccccccceEEEcCCCCE
Q 026118           88 FNGSQLRFANDVIEAS-DGSLYFTVSSTKFTPAEYYLDLVSGEPHGVLLKYDPSTNQTSLV-LDGLYFANGVALSEDERF  165 (243)
Q Consensus        88 ~~~~~~~~~~~l~~d~-~G~l~v~~~~~~~~~~~~~~~~~~~~~~g~v~~~~~~~~~~~~~-~~~~~~~~gi~~~~dg~~  165 (243)
                      ..+ ...++.+..+.| .+++.++.+                 ..+.|-.+|......... .....-...+.+-|.|. 
T Consensus       149 l~~-htDYVR~g~~~~~~~hivvtGs-----------------YDg~vrl~DtR~~~~~v~elnhg~pVe~vl~lpsgs-  209 (487)
T KOG0310|consen  149 LSG-HTDYVRCGDISPANDHIVVTGS-----------------YDGKVRLWDTRSLTSRVVELNHGCPVESVLALPSGS-  209 (487)
T ss_pred             ecC-CcceeEeeccccCCCeEEEecC-----------------CCceEEEEEeccCCceeEEecCCCceeeEEEcCCCC-
Confidence            111 123566667766 456777732                 234454455543321111 11112223455556666 


Q ss_pred             EEEEEcCCCeEEEEEeec
Q 026118          166 LVVCESWKFRCVKHFLKV  183 (243)
Q Consensus       166 l~v~~~~~~~i~~~~~~~  183 (243)
                      +.++ .+.+.+-.||..+
T Consensus       210 ~ias-AgGn~vkVWDl~~  226 (487)
T KOG0310|consen  210 LIAS-AGGNSVKVWDLTT  226 (487)
T ss_pred             EEEE-cCCCeEEEEEecC
Confidence            5555 5668899999873

>KOG0301 consensus Phospholipase A2-activating protein (contains WD40 repeats) [Lipid transport and metabolism]

Probab=95.22  E-value=1.5  Score=39.00  Aligned_cols=102  Identities=13%  Similarity=0.134  Sum_probs=58.6

Q ss_pred             ceEEccCCCEEEEEeCCCcEEEEecCC--cEEEEeccCCCcccCCccEEEcCCCcEEEEeCCCCCCcccccccccccCCC
Q 026118           54 GLTTTKENNVIIVCDSQQGLLKVSEEG--VTVLVSQFNGSQLRFANDVIEASDGSLYFTVSSTKFTPAEYYLDLVSGEPH  131 (243)
Q Consensus        54 ~i~~~~~g~l~~v~~~~~gl~~~~~~g--~~~~~~~~~~~~~~~~~~l~~d~~G~l~v~~~~~~~~~~~~~~~~~~~~~~  131 (243)
                      .++.-+++.  |++......+++-..+  .+.+.    + ....+.++++-+++.+.-+..                  .
T Consensus       145 Av~~l~e~~--~vTgsaDKtIklWk~~~~l~tf~----g-HtD~VRgL~vl~~~~flScsN------------------D  199 (745)
T KOG0301|consen  145 AVASLPENT--YVTGSADKTIKLWKGGTLLKTFS----G-HTDCVRGLAVLDDSHFLSCSN------------------D  199 (745)
T ss_pred             eeeecCCCc--EEeccCcceeeeccCCchhhhhc----c-chhheeeeEEecCCCeEeecC------------------C
Confidence            566667764  4555455555555333  33322    1 234678888888876665532                  3


Q ss_pred             ceEEEEeCCCCeeEEeeccccccceEEEcCCCCEEEEEEcCCCeEEEEEe
Q 026118          132 GVLLKYDPSTNQTSLVLDGLYFANGVALSEDERFLVVCESWKFRCVKHFL  181 (243)
Q Consensus       132 g~v~~~~~~~~~~~~~~~~~~~~~gi~~~~dg~~l~v~~~~~~~i~~~~~  181 (243)
                      |.|-+.+.++..+........+...|....++. +.++...++.+..++.
T Consensus       200 g~Ir~w~~~ge~l~~~~ghtn~vYsis~~~~~~-~Ivs~gEDrtlriW~~  248 (745)
T KOG0301|consen  200 GSIRLWDLDGEVLLEMHGHTNFVYSISMALSDG-LIVSTGEDRTLRIWKK  248 (745)
T ss_pred             ceEEEEeccCceeeeeeccceEEEEEEecCCCC-eEEEecCCceEEEeec
Confidence            566667776455555554445556666555555 6666566666666653

>PF08553 VID27: VID27 cytoplasmic protein; InterPro: IPR013863 This entry represents fungal and plant proteins and contains many hypothetical proteins

Probab=95.22  E-value=1.3  Score=40.83  Aligned_cols=150  Identities=13%  Similarity=0.192  Sum_probs=84.4

Q ss_pred             CcccEEEc-CCCcEEEEe--CCCcEEEEc-cCCc-eeEecccCCccccceEEcc------CCCEEEEEeCCCcEEEEe-c
Q 026118           11 HPEDVSVD-GNGVLYTAT--GDGWIKRMH-PNGT-WEDWHQVGSQSLLGLTTTK------ENNVIIVCDSQQGLLKVS-E   78 (243)
Q Consensus        11 ~p~~i~~d-~~g~l~~~~--~~~~i~~~~-~~g~-~~~~~~~~~~~~~~i~~~~------~g~l~~v~~~~~gl~~~~-~   78 (243)
                      .|..+... .+..|.+-+  ....||++| ..|+ +..|......+...++.+.      .... |++....+|+++| +
T Consensus       482 ~P~k~mL~~~d~~mil~~~~~~~~ly~mDLe~GKVV~eW~~~~~~~v~~~~p~~K~aqlt~e~t-flGls~n~lfriDpR  560 (794)
T PF08553_consen  482 TPKKAMLHDQDRNMILLDPNNPNKLYKMDLERGKVVEEWKVHDDIPVVDIAPDSKFAQLTNEQT-FLGLSDNSLFRIDPR  560 (794)
T ss_pred             CcchhhhhccccceEeecCCCCCceEEEecCCCcEEEEeecCCCcceeEecccccccccCCCce-EEEECCCceEEeccC
Confidence            45544443 344555544  457899999 5666 4455443222221333321      1234 6887778999999 3


Q ss_pred             -CCcEEEEe-ccCCCcccCCccEEEcCCCcEEEEeCCCCCCcccccccccccCCCceEEEEeCCCCeeEEeecccccc-c
Q 026118           79 -EGVTVLVS-QFNGSQLRFANDVIEASDGSLYFTVSSTKFTPAEYYLDLVSGEPHGVLLKYDPSTNQTSLVLDGLYFA-N  155 (243)
Q Consensus        79 -~g~~~~~~-~~~~~~~~~~~~l~~d~~G~l~v~~~~~~~~~~~~~~~~~~~~~~g~v~~~~~~~~~~~~~~~~~~~~-~  155 (243)
                       .+-+.+.. ...-...+...+++.+.+|.|-++..                  .|.|-.||.-+.+.+....++..| .
T Consensus       561 ~~~~k~v~~~~k~Y~~~~~Fs~~aTt~~G~iavgs~------------------~G~IRLyd~~g~~AKT~lp~lG~pI~  622 (794)
T PF08553_consen  561 LSGNKLVDSQSKQYSSKNNFSCFATTEDGYIAVGSN------------------KGDIRLYDRLGKRAKTALPGLGDPII  622 (794)
T ss_pred             CCCCceeeccccccccCCCceEEEecCCceEEEEeC------------------CCcEEeecccchhhhhcCCCCCCCee
Confidence             34222111 11111223455788889999999853                  356666776533333344444443 6


Q ss_pred             eEEEcCCCCEEEEEEcCCCeEEEEEe
Q 026118          156 GVALSEDERFLVVCESWKFRCVKHFL  181 (243)
Q Consensus       156 gi~~~~dg~~l~v~~~~~~~i~~~~~  181 (243)
                      +|.++.||+|+..+..  ..|..++.
T Consensus       623 ~iDvt~DGkwilaTc~--tyLlLi~t  646 (794)
T PF08553_consen  623 GIDVTADGKWILATCK--TYLLLIDT  646 (794)
T ss_pred             EEEecCCCcEEEEeec--ceEEEEEE
Confidence            8999999998877643  35666654

Vid27p is a cytoplasmic protein of unknown function, possibly regulates import of fructose-1,6-bisphosphatase into Vacuolar Import and Degradation (Vid) vesicles and is not essential for proteasome-dependent degradation of fructose-1,6-bisphosphatase (FBPase) [, ].

>COG3823 Glutamine cyclotransferase [Posttranslational modification, protein turnover, chaperones]

Probab=95.22  E-value=1  Score=34.40  Aligned_cols=167  Identities=15%  Similarity=0.096  Sum_probs=84.7

Q ss_pred             CcEEEEe---CCCcEEEEc-cCCceeEecccC-Ccccc-ceEEccCCCEEEEEeCCCcE-EEEecCCcEEEEe-ccCCCc
Q 026118           21 GVLYTAT---GDGWIKRMH-PNGTWEDWHQVG-SQSLL-GLTTTKENNVIIVCDSQQGL-LKVSEEGVTVLVS-QFNGSQ   92 (243)
Q Consensus        21 g~l~~~~---~~~~i~~~~-~~g~~~~~~~~~-~~~~~-~i~~~~~g~l~~v~~~~~gl-~~~~~~g~~~~~~-~~~~~~   92 (243)
                      |.++.++   ....|++.+ .+|++..-.... ....+ |+..  -|+.+|.-++..|+ +.+|.+-++.+.. .+++. 
T Consensus        56 g~i~esTG~yg~S~ir~~~L~~gq~~~s~~l~~~~~FgEGit~--~gd~~y~LTw~egvaf~~d~~t~~~lg~~~y~Ge-  132 (262)
T COG3823          56 GHILESTGLYGFSKIRVSDLTTGQEIFSEKLAPDTVFGEGITK--LGDYFYQLTWKEGVAFKYDADTLEELGRFSYEGE-  132 (262)
T ss_pred             CEEEEeccccccceeEEEeccCceEEEEeecCCccccccceee--ccceEEEEEeccceeEEEChHHhhhhcccccCCc-
Confidence            3566655   344677777 446654433221 11110 3333  24444888887775 4555332332222 23332 


Q ss_pred             ccCCccEEEcCCCcEEEEeCCCCCCcccccccccccCCCceEEEEeCCCCeeE-Ee---ecc--ccccceEEEcCCCCEE
Q 026118           93 LRFANDVIEASDGSLYFTVSSTKFTPAEYYLDLVSGEPHGVLLKYDPSTNQTS-LV---LDG--LYFANGVALSEDERFL  166 (243)
Q Consensus        93 ~~~~~~l~~d~~G~l~v~~~~~~~~~~~~~~~~~~~~~~g~v~~~~~~~~~~~-~~---~~~--~~~~~gi~~~~dg~~l  166 (243)
                         -.+++.|. -++|.++-                  +..++..||++-... .+   ..+  ...-|-+.+ -||. +
T Consensus       133 ---GWgLt~d~-~~LimsdG------------------satL~frdP~tfa~~~~v~VT~~g~pv~~LNELE~-VdG~-l  188 (262)
T COG3823         133 ---GWGLTSDD-KNLIMSDG------------------SATLQFRDPKTFAELDTVQVTDDGVPVSKLNELEW-VDGE-L  188 (262)
T ss_pred             ---ceeeecCC-cceEeeCC------------------ceEEEecCHHHhhhcceEEEEECCeecccccceee-eccE-E
Confidence               23555443 35777752                  246777788753221 11   111  122244444 3565 7


Q ss_pred             EEEEcCCCeEEEEEeecCCCcceEEecc---------CCCCCCCceEECCCC-CEEEE
Q 026118          167 VVCESWKFRCVKHFLKVSGRTDREIFID---------NLPGGPDNVNLARDG-SFWIS  214 (243)
Q Consensus       167 ~v~~~~~~~i~~~~~~~~~~~~~~~~~~---------~~~~~~~~i~~d~~G-~lwv~  214 (243)
                      |.--..+..|.+++++.+.....--...         ....-++|||.++++ ++|+.
T Consensus       189 yANVw~t~~I~rI~p~sGrV~~widlS~L~~~~~~~~~~~nvlNGIA~~~~~~r~~iT  246 (262)
T COG3823         189 YANVWQTTRIARIDPDSGRVVAWIDLSGLLKELNLDKSNDNVLNGIAHDPQQDRFLIT  246 (262)
T ss_pred             EEeeeeecceEEEcCCCCcEEEEEEccCCchhcCccccccccccceeecCcCCeEEEe
Confidence            7666666789999987653322211111         112257889999876 68874

>KOG0310 consensus Conserved WD40 repeat-containing protein [Function unknown]

Probab=95.10  E-value=1.9  Score=36.79  Aligned_cols=143  Identities=13%  Similarity=0.036  Sum_probs=76.8

Q ss_pred             cEEEcC-CCcEE-EEeCCCcEEEEcc-CCceeEecccCCccccceEEccCCCEEEEEeCCCcEEEEe-cCCcEEEEeccC
Q 026118           14 DVSVDG-NGVLY-TATGDGWIKRMHP-NGTWEDWHQVGSQSLLGLTTTKENNVIIVCDSQQGLLKVS-EEGVTVLVSQFN   89 (243)
Q Consensus        14 ~i~~d~-~g~l~-~~~~~~~i~~~~~-~g~~~~~~~~~~~~~~~i~~~~~g~l~~v~~~~~gl~~~~-~~g~~~~~~~~~   89 (243)
                      +.++.+ ++.+. .|..+|.|..+|. ...........+.|.-.+.+-+.|.+ ++...+..+-.+| .+|.+.+.....
T Consensus       158 ~g~~~~~~~hivvtGsYDg~vrl~DtR~~~~~v~elnhg~pVe~vl~lpsgs~-iasAgGn~vkVWDl~~G~qll~~~~~  236 (487)
T KOG0310|consen  158 CGDISPANDHIVVTGSYDGKVRLWDTRSLTSRVVELNHGCPVESVLALPSGSL-IASAGGNSVKVWDLTTGGQLLTSMFN  236 (487)
T ss_pred             eeccccCCCeEEEecCCCceEEEEEeccCCceeEEecCCCceeeEEEcCCCCE-EEEcCCCeEEEEEecCCceehhhhhc
Confidence            344443 44444 4448888888882 11122222233555546667788888 5655555677777 545332222111


Q ss_pred             CCcccCCccEEEcCCCcEEEEeCCCCCCcccccccccccCCCceEEEEeCCCCeeEEeeccccccceEEEcCCCCEEEEE
Q 026118           90 GSQLRFANDVIEASDGSLYFTVSSTKFTPAEYYLDLVSGEPHGVLLKYDPSTNQTSLVLDGLYFANGVALSEDERFLVVC  169 (243)
Q Consensus        90 ~~~~~~~~~l~~d~~G~l~v~~~~~~~~~~~~~~~~~~~~~~g~v~~~~~~~~~~~~~~~~~~~~~gi~~~~dg~~l~v~  169 (243)
                        .+-.+.+++...+++-.++.                 ...+.|-.||..+-++..-..-..-.-+|+++|+++++++.
T Consensus       237 --H~KtVTcL~l~s~~~rLlS~-----------------sLD~~VKVfd~t~~Kvv~s~~~~~pvLsiavs~dd~t~viG  297 (487)
T KOG0310|consen  237 --HNKTVTCLRLASDSTRLLSG-----------------SLDRHVKVFDTTNYKVVHSWKYPGPVLSIAVSPDDQTVVIG  297 (487)
T ss_pred             --ccceEEEEEeecCCceEeec-----------------ccccceEEEEccceEEEEeeecccceeeEEecCCCceEEEe
Confidence              12245678887777655542                 23456666775433332222222233578999999978777


Q ss_pred             EcCCCeEE
Q 026118          170 ESWKFRCV  177 (243)
Q Consensus       170 ~~~~~~i~  177 (243)
                       +.++.+.
T Consensus       298 -msnGlv~  304 (487)
T KOG0310|consen  298 -MSNGLVS  304 (487)
T ss_pred             -cccceee
Confidence             4444443

>PF00930 DPPIV_N: Dipeptidyl peptidase IV (DPP IV) N-terminal region; InterPro: IPR002469 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families

Probab=95.07  E-value=1.7  Score=36.25  Aligned_cols=83  Identities=12%  Similarity=0.149  Sum_probs=54.4

Q ss_pred             CceEEEEeCCCCeeEEeeccccccc-eEEEcCCCCEEEEEEcC----CCeEEEEEee-cCCCcceEEeccCCCCCCC-ce
Q 026118          131 HGVLLKYDPSTNQTSLVLDGLYFAN-GVALSEDERFLVVCESW----KFRCVKHFLK-VSGRTDREIFIDNLPGGPD-NV  203 (243)
Q Consensus       131 ~g~v~~~~~~~~~~~~~~~~~~~~~-gi~~~~dg~~l~v~~~~----~~~i~~~~~~-~~~~~~~~~~~~~~~~~~~-~i  203 (243)
                      ...||.++.+++..+.+..+..... -+.++++++.+|++...    ...|++.+.+ +   +..+.+..  ..... .+
T Consensus       259 ~~hly~~~~~~~~~~~lT~G~~~V~~i~~~d~~~~~iyf~a~~~~p~~r~lY~v~~~~~---~~~~~LT~--~~~~~~~~  333 (353)
T PF00930_consen  259 YRHLYLYDLDGGKPRQLTSGDWEVTSILGWDEDNNRIYFTANGDNPGERHLYRVSLDSG---GEPKCLTC--EDGDHYSA  333 (353)
T ss_dssp             SEEEEEEETTSSEEEESS-SSS-EEEEEEEECTSSEEEEEESSGGTTSBEEEEEETTET---TEEEESST--TSSTTEEE
T ss_pred             CcEEEEEcccccceeccccCceeecccceEcCCCCEEEEEecCCCCCceEEEEEEeCCC---CCeEeccC--CCCCceEE
Confidence            3579999999888777765554443 47788999989987654    3478888776 3   23333321  12233 78


Q ss_pred             EECCCCCEEEEEecC
Q 026118          204 NLARDGSFWISIIKM  218 (243)
Q Consensus       204 ~~d~~G~lwv~~~~~  218 (243)
                      .++++|+.++-...+
T Consensus       334 ~~Spdg~y~v~~~s~  348 (353)
T PF00930_consen  334 SFSPDGKYYVDTYSG  348 (353)
T ss_dssp             EE-TTSSEEEEEEES
T ss_pred             EECCCCCEEEEEEcC
Confidence            999999988876654

Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This domain defines serine peptidases belonging to MEROPS peptidase family S9 (clan SC), subfamily S9B (dipeptidyl-peptidase IV). The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. This domain is an alignment of the region to the N-terminal side of the active site, which is found in IPR001375 from INTERPRO. CD26 (3.4.14.5 from EC) is also called adenosine deaminase-binding protein (ADA-binding protein) or dipeptidylpeptidase IV (DPP IV ectoenzyme). The exopeptidase cleaves off N-terminal X-Pro or X-Ala dipeptides from polypeptides (dipeptidyl peptidase IV activity). CD26 serves as the costimulatory molecule in T cell activation and is an associated marker of autoimmune diseases, adenosine deaminase-deficiency and HIV pathogenesis. Dipeptidyl peptidase IV (DPP IV) is responsible for the removal of N-terminal dipeptides sequentially from polypeptides having unsubstituted N termini, provided that the penultimate residue is proline. The enzyme catalyses the reaction: Dipeptidyl-Polypeptide + H(2)O = Dipeptide + Polypeptide It is a type II membrane protein that forms a homodimer. CD molecules are leucocyte antigens on cell surfaces. CD antigens nomenclature is updated at Protein Reviews On The Web (http://prow.nci.nih.gov/). ; GO: 0006508 proteolysis, 0016020 membrane; PDB: 2RIP_A 3Q8W_B 2AJL_I 1TKR_B 1TK3_B 3C45_A 2G5P_A 3G0C_D 1R9M_C 1RWQ_A ....

>KOG1036 consensus Mitotic spindle checkpoint protein BUB3, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning]

Probab=95.04  E-value=1.1  Score=35.95  Aligned_cols=106  Identities=11%  Similarity=0.046  Sum_probs=70.2

Q ss_pred             ceEEccCCCEEEEEeCCCcEEEEe-cCC-cEEEEeccCCCcccCCccEEEcCCCcEEEEeCCCCCCcccccccccccCCC
Q 026118           54 GLTTTKENNVIIVCDSQQGLLKVS-EEG-VTVLVSQFNGSQLRFANDVIEASDGSLYFTVSSTKFTPAEYYLDLVSGEPH  131 (243)
Q Consensus        54 ~i~~~~~g~l~~v~~~~~gl~~~~-~~g-~~~~~~~~~~~~~~~~~~l~~d~~G~l~v~~~~~~~~~~~~~~~~~~~~~~  131 (243)
                      .+.|++....|.++.+++-+..++ +.. .+..... . .   .+-+.++.++-++|+++.                  .
T Consensus        18 ~v~f~~~~~~LLvssWDgslrlYdv~~~~l~~~~~~-~-~---plL~c~F~d~~~~~~G~~------------------d   74 (323)
T KOG1036|consen   18 SVKFSPSSSDLLVSSWDGSLRLYDVPANSLKLKFKH-G-A---PLLDCAFADESTIVTGGL------------------D   74 (323)
T ss_pred             eEEEcCcCCcEEEEeccCcEEEEeccchhhhhheec-C-C---ceeeeeccCCceEEEecc------------------C
Confidence            677876655558888877677777 433 2221111 1 1   122446666778888853                  4


Q ss_pred             ceEEEEeCCCCeeEEeeccccccceEEEcCCCCEEEEEEcCCCeEEEEEeec
Q 026118          132 GVLLKYDPSTNQTSLVLDGLYFANGVALSEDERFLVVCESWKFRCVKHFLKV  183 (243)
Q Consensus       132 g~v~~~~~~~~~~~~~~~~~~~~~gi~~~~dg~~l~v~~~~~~~i~~~~~~~  183 (243)
                      +.|-++|..+++...+.........|...+.-. ..|+..++..|-.+|+..
T Consensus        75 g~vr~~Dln~~~~~~igth~~~i~ci~~~~~~~-~vIsgsWD~~ik~wD~R~  125 (323)
T KOG1036|consen   75 GQVRRYDLNTGNEDQIGTHDEGIRCIEYSYEVG-CVISGSWDKTIKFWDPRN  125 (323)
T ss_pred             ceEEEEEecCCcceeeccCCCceEEEEeeccCC-eEEEcccCccEEEEeccc
Confidence            689999999887666655555566788776555 677778889999999753

>KOG0643 consensus Translation initiation factor 3, subunit i (eIF-3i)/TGF-beta receptor-interacting protein (TRIP-1) [Translation, ribosomal structure and biogenesis; Signal transduction mechanisms]

Probab=95.04  E-value=1.4  Score=34.94  Aligned_cols=187  Identities=11%  Similarity=0.023  Sum_probs=101.4

Q ss_pred             cCCccc-EEEcCCCcEEEEe-CCCcEEEEc-cCCcee-EecccCCccccceEEccCCCEEEEEeCCCcEEEEe-cCCcEE
Q 026118            9 VNHPED-VSVDGNGVLYTAT-GDGWIKRMH-PNGTWE-DWHQVGSQSLLGLTTTKENNVIIVCDSQQGLLKVS-EEGVTV   83 (243)
Q Consensus         9 ~~~p~~-i~~d~~g~l~~~~-~~~~i~~~~-~~g~~~-~~~~~~~~~~~~i~~~~~g~l~~v~~~~~gl~~~~-~~g~~~   83 (243)
                      ..+|-. |-+..+|.|.++. .+.....+= .+|... .+.-..+..+ ++.+|.+-+.+..+..+.-+..+| ++|. +
T Consensus         9 HERplTqiKyN~eGDLlFscaKD~~~~vw~s~nGerlGty~GHtGavW-~~Did~~s~~liTGSAD~t~kLWDv~tGk-~   86 (327)
T KOG0643|consen    9 HERPLTQIKYNREGDLLFSCAKDSTPTVWYSLNGERLGTYDGHTGAVW-CCDIDWDSKHLITGSADQTAKLWDVETGK-Q   86 (327)
T ss_pred             CccccceEEecCCCcEEEEecCCCCceEEEecCCceeeeecCCCceEE-EEEecCCcceeeeccccceeEEEEcCCCc-E
Confidence            555554 6667899877665 444433332 355432 2222223334 778877766634444444566777 7771 1


Q ss_pred             EEeccCCCcccCCccEEEcCCCcEEEEeCCCCCCcccccccccccCCCceEEEEeCC-------CCe-eEEeeccccccc
Q 026118           84 LVSQFNGSQLRFANDVIEASDGSLYFTVSSTKFTPAEYYLDLVSGEPHGVLLKYDPS-------TNQ-TSLVLDGLYFAN  155 (243)
Q Consensus        84 ~~~~~~~~~~~~~~~l~~d~~G~l~v~~~~~~~~~~~~~~~~~~~~~~g~v~~~~~~-------~~~-~~~~~~~~~~~~  155 (243)
                      +.....   ...+..+.++.+|++.+......-+            ....|..++..       ..+ +.++......++
T Consensus        87 la~~k~---~~~Vk~~~F~~~gn~~l~~tD~~mg------------~~~~v~~fdi~~~~~~~~s~ep~~kI~t~~skit  151 (327)
T KOG0643|consen   87 LATWKT---NSPVKRVDFSFGGNLILASTDKQMG------------YTCFVSVFDIRDDSSDIDSEEPYLKIPTPDSKIT  151 (327)
T ss_pred             EEEeec---CCeeEEEeeccCCcEEEEEehhhcC------------cceEEEEEEccCChhhhcccCceEEecCCcccee
Confidence            221111   1234567888899866654321110            12234444433       122 333344446677


Q ss_pred             eEEEcCCCCEEEEEEcCCCeEEEEEeecCCCcceEEecc--CCCCCCCceEECCCCCEEEEEec
Q 026118          156 GVALSEDERFLVVCESWKFRCVKHFLKVSGRTDREIFID--NLPGGPDNVNLARDGSFWISIIK  217 (243)
Q Consensus       156 gi~~~~dg~~l~v~~~~~~~i~~~~~~~~~~~~~~~~~~--~~~~~~~~i~~d~~G~lwv~~~~  217 (243)
                      .+.+++-+++|..+ -.++.|.+||...+.    +.+..  .-....++|.+.++...+|....
T Consensus       152 ~a~Wg~l~~~ii~G-he~G~is~~da~~g~----~~v~s~~~h~~~Ind~q~s~d~T~FiT~s~  210 (327)
T KOG0643|consen  152 SALWGPLGETIIAG-HEDGSISIYDARTGK----ELVDSDEEHSSKINDLQFSRDRTYFITGSK  210 (327)
T ss_pred             eeeecccCCEEEEe-cCCCcEEEEEcccCc----eeeechhhhccccccccccCCcceEEeccc
Confidence            88999999966655 467899999986531    11110  11124677888999888886543

>KOG0275 consensus Conserved WD40 repeat-containing protein [General function prediction only]

Probab=95.03  E-value=1.5  Score=35.53  Aligned_cols=111  Identities=11%  Similarity=-0.010  Sum_probs=62.8

Q ss_pred             ceEEccCCCEEEEEeCCCcEE-EEe-cCC--cEEEEeccCCCcccCCccEEEcCCC--cEEEEeCCCCCCcccccccccc
Q 026118           54 GLTTTKENNVIIVCDSQQGLL-KVS-EEG--VTVLVSQFNGSQLRFANDVIEASDG--SLYFTVSSTKFTPAEYYLDLVS  127 (243)
Q Consensus        54 ~i~~~~~g~l~~v~~~~~gl~-~~~-~~g--~~~~~~~~~~~~~~~~~~l~~d~~G--~l~v~~~~~~~~~~~~~~~~~~  127 (243)
                      ...|.+||+. .+.....|.+ .++ .++  ...+.....   .-.++.+..-|..  .+.+++                
T Consensus       353 ~a~ft~dG~~-iisaSsDgtvkvW~~KtteC~~Tfk~~~~---d~~vnsv~~~PKnpeh~iVCN----------------  412 (508)
T KOG0275|consen  353 EATFTDDGHH-IISASSDGTVKVWHGKTTECLSTFKPLGT---DYPVNSVILLPKNPEHFIVCN----------------  412 (508)
T ss_pred             ceEEcCCCCe-EEEecCCccEEEecCcchhhhhhccCCCC---cccceeEEEcCCCCceEEEEc----------------
Confidence            5678899998 4444445544 444 443  222221111   1123455555533  455664                


Q ss_pred             cCCCceEEEEeCCCCeeEEeecc----ccccceEEEcCCCCEEEEEEcCCCeEEEEEeecCCCcc
Q 026118          128 GEPHGVLLKYDPSTNQTSLVLDG----LYFANGVALSEDERFLVVCESWKFRCVKHFLKVSGRTD  188 (243)
Q Consensus       128 ~~~~g~v~~~~~~~~~~~~~~~~----~~~~~gi~~~~dg~~l~v~~~~~~~i~~~~~~~~~~~~  188 (243)
                        .++.||..+..+.-++.+..+    .... ..+++|.|.|+|... .+..+|.|....+.+.+
T Consensus       413 --rsntv~imn~qGQvVrsfsSGkREgGdFi-~~~lSpkGewiYcig-ED~vlYCF~~~sG~LE~  473 (508)
T KOG0275|consen  413 --RSNTVYIMNMQGQVVRSFSSGKREGGDFI-NAILSPKGEWIYCIG-EDGVLYCFSVLSGKLER  473 (508)
T ss_pred             --CCCeEEEEeccceEEeeeccCCccCCceE-EEEecCCCcEEEEEc-cCcEEEEEEeecCceee
Confidence              235788888884444444322    1222 357799999999885 46889999887655443

>KOG0650 consensus WD40 repeat nucleolar protein Bop1, involved in ribosome biogenesis [Translation, ribosomal structure and biogenesis]

Probab=94.99  E-value=1.8  Score=38.09  Aligned_cols=104  Identities=12%  Similarity=0.042  Sum_probs=58.5

Q ss_pred             CccEEEcCCCcEEEEeCCCCCCcccccccccccCCCceEEEEeCCCCeeE-EeeccccccceEEEcCCCCEEEEEEcCCC
Q 026118           96 ANDVIEASDGSLYFTVSSTKFTPAEYYLDLVSGEPHGVLLKYDPSTNQTS-LVLDGLYFANGVALSEDERFLVVCESWKF  174 (243)
Q Consensus        96 ~~~l~~d~~G~l~v~~~~~~~~~~~~~~~~~~~~~~g~v~~~~~~~~~~~-~~~~~~~~~~gi~~~~dg~~l~v~~~~~~  174 (243)
                      +..|....+|.++.+.+.              ...+-+|+..+......+ ++......++...|+|-.-+|+|+..  .
T Consensus       524 i~~vtWHrkGDYlatV~~--------------~~~~~~VliHQLSK~~sQ~PF~kskG~vq~v~FHPs~p~lfVaTq--~  587 (733)
T KOG0650|consen  524 IRQVTWHRKGDYLATVMP--------------DSGNKSVLIHQLSKRKSQSPFRKSKGLVQRVKFHPSKPYLFVATQ--R  587 (733)
T ss_pred             cceeeeecCCceEEEecc--------------CCCcceEEEEecccccccCchhhcCCceeEEEecCCCceEEEEec--c
Confidence            334555566666655332              112335666666533222 22234456788999998888999975  5


Q ss_pred             eEEEEEeecCCCcceEEeccCCC--CCCCceEECCCC-CEEEEEecCCc
Q 026118          175 RCVKHFLKVSGRTDREIFIDNLP--GGPDNVNLARDG-SFWISIIKMDP  220 (243)
Q Consensus       175 ~i~~~~~~~~~~~~~~~~~~~~~--~~~~~i~~d~~G-~lwv~~~~~~~  220 (243)
                      .|..||+....+     .....+  ...+.|++++.| +|.+++....-
T Consensus       588 ~vRiYdL~kqel-----vKkL~tg~kwiS~msihp~GDnli~gs~d~k~  631 (733)
T KOG0650|consen  588 SVRIYDLSKQEL-----VKKLLTGSKWISSMSIHPNGDNLILGSYDKKM  631 (733)
T ss_pred             ceEEEehhHHHH-----HHHHhcCCeeeeeeeecCCCCeEEEecCCCee
Confidence            677788754211     111111  135667777766 47777666553

>KOG1963 consensus WD40 repeat protein [General function prediction only]

Probab=94.97  E-value=2.3  Score=38.75  Aligned_cols=147  Identities=16%  Similarity=0.105  Sum_probs=83.2

Q ss_pred             cccEEEcCCCcEEEEeCCCcEEEEc-cCCceeEeccc-----CCccccceEEccCCCEEEEEeCCCcEEEEe--c-CC--
Q 026118           12 PEDVSVDGNGVLYTATGDGWIKRMH-PNGTWEDWHQV-----GSQSLLGLTTTKENNVIIVCDSQQGLLKVS--E-EG--   80 (243)
Q Consensus        12 p~~i~~d~~g~l~~~~~~~~i~~~~-~~g~~~~~~~~-----~~~~~~~i~~~~~g~l~~v~~~~~gl~~~~--~-~g--   80 (243)
                      |..|+....|.......+-.++.+. +.++ +.....     ...+....++++.++.+.+++..+.|..+.  . ++  
T Consensus       163 ~~~I~~~~~ge~~~i~~~~~~~~~~v~~~~-~~~~~~~~~~~Htf~~t~~~~spn~~~~Aa~d~dGrI~vw~d~~~~~~~  241 (792)
T KOG1963|consen  163 PKSIVDNNSGEFKGIVHMCKIHIYFVPKHT-KHTSSRDITVHHTFNITCVALSPNERYLAAGDSDGRILVWRDFGSSDDS  241 (792)
T ss_pred             CccEEEcCCceEEEEEEeeeEEEEEecccc-eeeccchhhhhhcccceeEEeccccceEEEeccCCcEEEEecccccccc
Confidence            6777776766554433445566665 3322 111000     001112578889998855555445565554  2 12  


Q ss_pred             cE-EEEeccCCCcccCCccEEEcCCCcEEEEeCCCCCCcccccccccccCCCceEEEEeCCCCeeEEeeccccc-cceEE
Q 026118           81 VT-VLVSQFNGSQLRFANDVIEASDGSLYFTVSSTKFTPAEYYLDLVSGEPHGVLLKYDPSTNQTSLVLDGLYF-ANGVA  158 (243)
Q Consensus        81 ~~-~~~~~~~~~~~~~~~~l~~d~~G~l~v~~~~~~~~~~~~~~~~~~~~~~g~v~~~~~~~~~~~~~~~~~~~-~~gi~  158 (243)
                      .. .... .   .+..++++.+.++|...++.                 ...+.+.+...++++ +.+.+.+.. ...++
T Consensus       242 ~t~t~lH-W---H~~~V~~L~fS~~G~~LlSG-----------------G~E~VLv~Wq~~T~~-kqfLPRLgs~I~~i~  299 (792)
T KOG1963|consen  242 ETCTLLH-W---HHDEVNSLSFSSDGAYLLSG-----------------GREGVLVLWQLETGK-KQFLPRLGSPILHIV  299 (792)
T ss_pred             ccceEEE-e---cccccceeEEecCCceEeec-----------------ccceEEEEEeecCCC-cccccccCCeeEEEE
Confidence            11 1111 1   12457789999999766651                 123455566666666 455544443 36799


Q ss_pred             EcCCCCEEEEEEcCCCeEEEEEee
Q 026118          159 LSEDERFLVVCESWKFRCVKHFLK  182 (243)
Q Consensus       159 ~~~dg~~l~v~~~~~~~i~~~~~~  182 (243)
                      ++||+. +|..-..+++|..+...
T Consensus       300 vS~ds~-~~sl~~~DNqI~li~~~  322 (792)
T KOG1963|consen  300 VSPDSD-LYSLVLEDNQIHLIKAS  322 (792)
T ss_pred             EcCCCC-eEEEEecCceEEEEecc
Confidence            999999 77666778899888763

>PF00058 Ldl_recept_b: Low-density lipoprotein receptor repeat class B; InterPro: IPR000033 The low-density lipoprotein receptor (LDLR) is the major cholesterol-carrying lipoprotein of plasma, acting to regulate cholesterol homeostasis in mammalian cells

Probab=94.96  E-value=0.087  Score=29.04  Aligned_cols=40  Identities=13%  Similarity=0.049  Sum_probs=29.5

Q ss_pred             EEEEEEcCCC-eEEEEEeecCCCcceEEeccCCCCCCCceEECC
Q 026118          165 FLVVCESWKF-RCVKHFLKVSGRTDREIFIDNLPGGPDNVNLAR  207 (243)
Q Consensus       165 ~l~v~~~~~~-~i~~~~~~~~~~~~~~~~~~~~~~~~~~i~~d~  207 (243)
                      .||+++.... .|.+.+.++.   +.+++....-..|.+|++|.
T Consensus         2 ~iYWtD~~~~~~I~~a~~dGs---~~~~vi~~~l~~P~giaVD~   42 (42)
T PF00058_consen    2 KIYWTDWSQDPSIERANLDGS---NRRTVISDDLQHPEGIAVDW   42 (42)
T ss_dssp             EEEEEETTTTEEEEEEETTST---SEEEEEESSTSSEEEEEEET
T ss_pred             EEEEEECCCCcEEEEEECCCC---CeEEEEECCCCCcCEEEECC
Confidence            4999999888 8888888773   34444444455799999874

The LDL receptor binds LDL and transports it into cells by acidic endocytosis. In order to be internalized, the receptor-ligand complex must first cluster into clathrin-coated pits. Once inside the cell, the LDLR separates from its ligand, which is degraded in the lysosomes, while the receptor returns to the cell surface []. The internal dissociation of the LDLR with its ligand is mediated by proton pumps within the walls of the endosome that lower the pH. The LDLR is a multi-domain protein, containing: The ligand-binding domain contains seven or eight 40-amino acid LDLR class A (cysteine-rich) repeats, each of which contains a coordinated calcium ion and six cysteine residues involved in disulphide bond formation []. Similar domains have been found in other extracellular and membrane proteins []. The second conserved region contains two EGF repeats, followed by six LDLR class B (YWTD) repeats, and another EGF repeat. The LDLR class B repeats each contain a conserved YWTD motif, and is predicted to form a beta-propeller structure []. This region is critical for ligand release and recycling of the receptor []. The third domain is rich in serine and threonine residues and contains clustered O-linked carbohydrate chains. The fourth domain is the hydrophobic transmembrane region. The fifth domain is the cytoplasmic tail that directs the receptor to clathrin-coated pits. LDLR is closely related in structure to several other receptors, including LRP1, LRP1b, megalin/LRP2, VLDL receptor, lipoprotein receptor, MEGF7/LRP4, and LRP8/apolipoprotein E receptor2); these proteins participate in a wide range of physiological processes, including the regulation of lipid metabolism, protection against atherosclerosis, neurodevelopment, and transport of nutrients and vitamins []. This entry represents the LDLR classB (YWTD) repeat, the structure of which has been solved []. The six YWTD repeats together fold into a six-bladed beta-propeller. Each blade of the propeller consists of four antiparallel beta-strands; the innermost strand of each blade is labeled 1 and the outermost strand, 4. The sequence repeats are offset with respect to the blades of the propeller, such that any given 40-residue YWTD repeat spans strands 24 of one propeller blade and strand 1 of the subsequent blade. This offset ensures circularization of the propeller because the last strand of the final sequence repeat acts as an innermost strand 1 of the blade that harbors strands 24 from the first sequence repeat. The repeat is found in a variety of proteins that include, vitellogenin receptor from Drosophila melanogaster, low-density lipoprotein (LDL) receptor [], preproepidermal growth factor, and nidogen (entactin).; PDB: 3S2K_A 3S8Z_A 3S8V_B 4A0P_A 3SOB_B 3S94_B 4DG6_A 3SOV_A 3SOQ_A 1NPE_A ....

>PF05935 Arylsulfotrans: Arylsulfotransferase (ASST); InterPro: IPR010262 This family consists of several bacterial arylsulphotransferase proteins

Probab=94.91  E-value=1.4  Score=38.54  Aligned_cols=114  Identities=15%  Similarity=0.193  Sum_probs=58.0

Q ss_pred             EEEcCCCcEEEEeCCCcEEEEccCCceeE-ecccCCc---cccceEEccCCCEEEEEeC-------------CCcEEEEe
Q 026118           15 VSVDGNGVLYTATGDGWIKRMHPNGTWED-WHQVGSQ---SLLGLTTTKENNVIIVCDS-------------QQGLLKVS   77 (243)
Q Consensus        15 i~~d~~g~l~~~~~~~~i~~~~~~g~~~~-~~~~~~~---~~~~i~~~~~g~l~~v~~~-------------~~gl~~~~   77 (243)
                      +...++|.++++.. ..++.+|..|++.. +..+...   .+ .+...++|++|+.+..             ...|+.+|
T Consensus       153 ~~~l~nG~ll~~~~-~~~~e~D~~G~v~~~~~l~~~~~~~HH-D~~~l~nGn~L~l~~~~~~~~~~~~~~~~~D~Ivevd  230 (477)
T PF05935_consen  153 FKQLPNGNLLIGSG-NRLYEIDLLGKVIWEYDLPGGYYDFHH-DIDELPNGNLLILASETKYVDEDKDVDTVEDVIVEVD  230 (477)
T ss_dssp             EEE-TTS-EEEEEB-TEEEEE-TT--EEEEEE--TTEE-B-S--EEE-TTS-EEEEEEETTEE-TS-EE---S-EEEEE-
T ss_pred             eeEcCCCCEEEecC-CceEEEcCCCCEEEeeecCCccccccc-ccEECCCCCEEEEEeecccccCCCCccEecCEEEEEC
Confidence            44557787777655 67888887777443 2222211   45 7888899998666651             23588888


Q ss_pred             cCC-cEE-EEe--ccCC--------------------CcccCCccEEEcC-CCcEEEEeCCCCCCcccccccccccCCCc
Q 026118           78 EEG-VTV-LVS--QFNG--------------------SQLRFANDVIEAS-DGSLYFTVSSTKFTPAEYYLDLVSGEPHG  132 (243)
Q Consensus        78 ~~g-~~~-~~~--~~~~--------------------~~~~~~~~l~~d~-~G~l~v~~~~~~~~~~~~~~~~~~~~~~g  132 (243)
                      ++| +.. +..  ....                    ..-.+.+++..++ ++.|.++.                 +...
T Consensus       231 ~tG~vv~~wd~~d~ld~~~~~~~~~~~~~~~~~~~~~~DW~H~Nsi~yd~~dd~iivSs-----------------R~~s  293 (477)
T PF05935_consen  231 PTGEVVWEWDFFDHLDPYRDTVLKPYPYGDISGSGGGRDWLHINSIDYDPSDDSIIVSS-----------------RHQS  293 (477)
T ss_dssp             TTS-EEEEEEGGGTS-TT--TTGGT--SSSSS-SSTTSBS--EEEEEEETTTTEEEEEE-----------------TTT-
T ss_pred             CCCCEEEEEehHHhCCcccccccccccccccccCCCCCCccccCccEEeCCCCeEEEEc-----------------Ccce
Confidence            667 332 221  1100                    0113567888888 67787774                 2334


Q ss_pred             eEEEEeCCCCeeEEe
Q 026118          133 VLLKYDPSTNQTSLV  147 (243)
Q Consensus       133 ~v~~~~~~~~~~~~~  147 (243)
                      .|+++|..++++..+
T Consensus       294 ~V~~Id~~t~~i~Wi  308 (477)
T PF05935_consen  294 AVIKIDYRTGKIKWI  308 (477)
T ss_dssp             EEEEEE-TTS-EEEE
T ss_pred             EEEEEECCCCcEEEE
Confidence            788888777776654

Arylsulphotransferase (ASST) transfers a sulphate group from phenolic sulphate esters to a phenolic acceptor substrate [].; PDB: 3ETT_B 3ELQ_A 3ETS_A.

>KOG0643 consensus Translation initiation factor 3, subunit i (eIF-3i)/TGF-beta receptor-interacting protein (TRIP-1) [Translation, ribosomal structure and biogenesis; Signal transduction mechanisms]

Probab=94.57  E-value=1.8  Score=34.23  Aligned_cols=125  Identities=12%  Similarity=0.087  Sum_probs=67.9

Q ss_pred             eCCCcEEEEc-cCCceeE-ecccCCccccceEEccCCCEEEEEeCC-----CcEEEEe-cCC------cEEEEeccCCCc
Q 026118           27 TGDGWIKRMH-PNGTWED-WHQVGSQSLLGLTTTKENNVIIVCDSQ-----QGLLKVS-EEG------VTVLVSQFNGSQ   92 (243)
Q Consensus        27 ~~~~~i~~~~-~~g~~~~-~~~~~~~~~~~i~~~~~g~l~~v~~~~-----~gl~~~~-~~g------~~~~~~~~~~~~   92 (243)
                      ..+..+..+| +.|+... +..  +.+...+.|+.+|+++.+++..     .-|..++ ++.      -.++...+..  
T Consensus        71 SAD~t~kLWDv~tGk~la~~k~--~~~Vk~~~F~~~gn~~l~~tD~~mg~~~~v~~fdi~~~~~~~~s~ep~~kI~t~--  146 (327)
T KOG0643|consen   71 SADQTAKLWDVETGKQLATWKT--NSPVKRVDFSFGGNLILASTDKQMGYTCFVSVFDIRDDSSDIDSEEPYLKIPTP--  146 (327)
T ss_pred             cccceeEEEEcCCCcEEEEeec--CCeeEEEeeccCCcEEEEEehhhcCcceEEEEEEccCChhhhcccCceEEecCC--
Confidence            3445556666 5555432 322  3344478899999984343321     1244555 311      1112111111  


Q ss_pred             ccCCccEEEcCCCcEEEEeCCCCCCcccccccccccCCCceEEEEeCCCCeeEE-ee-ccccccceEEEcCCCCEEEEEE
Q 026118           93 LRFANDVIEASDGSLYFTVSSTKFTPAEYYLDLVSGEPHGVLLKYDPSTNQTSL-VL-DGLYFANGVALSEDERFLVVCE  170 (243)
Q Consensus        93 ~~~~~~l~~d~~G~l~v~~~~~~~~~~~~~~~~~~~~~~g~v~~~~~~~~~~~~-~~-~~~~~~~gi~~~~dg~~l~v~~  170 (243)
                      -..+..+..++-+...++.                 -..|.|-+||..+|.... .. ......+.|.+++|.. .+++.
T Consensus       147 ~skit~a~Wg~l~~~ii~G-----------------he~G~is~~da~~g~~~v~s~~~h~~~Ind~q~s~d~T-~FiT~  208 (327)
T KOG0643|consen  147 DSKITSALWGPLGETIIAG-----------------HEDGSISIYDARTGKELVDSDEEHSSKINDLQFSRDRT-YFITG  208 (327)
T ss_pred             ccceeeeeecccCCEEEEe-----------------cCCCcEEEEEcccCceeeechhhhccccccccccCCcc-eEEec
Confidence            1345556778877766662                 235789999998764322 21 2234678899999988 67665


Q ss_pred             cCC
Q 026118          171 SWK  173 (243)
Q Consensus       171 ~~~  173 (243)
                      +.+
T Consensus       209 s~D  211 (327)
T KOG0643|consen  209 SKD  211 (327)
T ss_pred             ccC
Confidence            543

>COG5276 Uncharacterized conserved protein [Function unknown]

Probab=94.47  E-value=2.1  Score=34.49  Aligned_cols=176  Identities=13%  Similarity=0.120  Sum_probs=88.3

Q ss_pred             CCcEEEEeCCCcEEEEc---cCCc-eeEecccCCccccceEEccCCCEEEEEeCCCcEEEEe-cCC-cEEEEeccCCCcc
Q 026118           20 NGVLYTATGDGWIKRMH---PNGT-WEDWHQVGSQSLLGLTTTKENNVIIVCDSQQGLLKVS-EEG-VTVLVSQFNGSQL   93 (243)
Q Consensus        20 ~g~l~~~~~~~~i~~~~---~~g~-~~~~~~~~~~~~~~i~~~~~g~l~~v~~~~~gl~~~~-~~g-~~~~~~~~~~~~~   93 (243)
                      ...+|++++..+++.+|   |+.. ...+....+... +..+  .|+.+||++...|++.+| .+- ..++........ 
T Consensus        96 e~yvyvad~ssGL~IvDIS~P~sP~~~~~lnt~gyay-gv~v--sGn~aYVadlddgfLivdvsdpssP~lagrya~~~-  171 (370)
T COG5276          96 EEYVYVADWSSGLRIVDISTPDSPTLIGFLNTDGYAY-GVYV--SGNYAYVADLDDGFLIVDVSDPSSPQLAGRYALPG-  171 (370)
T ss_pred             ccEEEEEcCCCceEEEeccCCCCcceeccccCCceEE-EEEe--cCCEEEEeeccCcEEEEECCCCCCceeeeeeccCC-
Confidence            44688888777888887   2221 111111112223 4444  488889999888999998 433 222222111110 


Q ss_pred             cCCccEEEcCCCcEEEEeCCCCCCcccccccccccCCCceEEEEeCCCCeeEEeecc---ccccceEEEcCCCCEEEEEE
Q 026118           94 RFANDVIEASDGSLYFTVSSTKFTPAEYYLDLVSGEPHGVLLKYDPSTNQTSLVLDG---LYFANGVALSEDERFLVVCE  170 (243)
Q Consensus        94 ~~~~~l~~d~~G~l~v~~~~~~~~~~~~~~~~~~~~~~g~v~~~~~~~~~~~~~~~~---~~~~~gi~~~~dg~~l~v~~  170 (243)
                      .-..+++++. ...|++..                  .++|-.+|-....--.+...   .....+..++++  +.|+..
T Consensus       172 ~d~~~v~ISG-n~AYvA~~------------------d~GL~ivDVSnp~sPvli~~~n~g~g~~sv~vsdn--r~y~vv  230 (370)
T COG5276         172 GDTHDVAISG-NYAYVAWR------------------DGGLTIVDVSNPHSPVLIGSYNTGPGTYSVSVSDN--RAYLVV  230 (370)
T ss_pred             CCceeEEEec-CeEEEEEe------------------CCCeEEEEccCCCCCeEEEEEecCCceEEEEecCC--eeEEEE
Confidence            1113455542 35677642                  24566666553221122211   113344554433  477765


Q ss_pred             cCCCeEEEEEeecCCCcceEEeccCCCCCCCce---EECCCCCEEEEEecCCchhhh
Q 026118          171 SWKFRCVKHFLKVSGRTDREIFIDNLPGGPDNV---NLARDGSFWISIIKMDPKGIQ  224 (243)
Q Consensus       171 ~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~i---~~d~~G~lwv~~~~~~~~~~~  224 (243)
                      - +..+...+.++.  +..+++..-.+.-|.++   .+ ++...|++....+....+
T Consensus       231 y-~egvlivd~s~~--ssp~~~gsyet~~p~~~s~v~V-s~~~~Yvadga~gl~~id  283 (370)
T COG5276         231 Y-DEGVLIVDVSGP--SSPTVFGSYETSNPVSISTVPV-SGEYAYVADGAKGLPIID  283 (370)
T ss_pred             c-ccceEEEecCCC--CCceEeeccccCCcccccceec-ccceeeeeccccCceeEe
Confidence            3 456777777664  33344432233334443   33 344688888776654443

>PRK13616 lipoprotein LpqB; Provisional

Probab=94.46  E-value=3.5  Score=37.04  Aligned_cols=178  Identities=11%  Similarity=0.043  Sum_probs=89.8

Q ss_pred             cEEEEeCCCcEEEEccCCceeEeccc---CCccccceEEccCCCEE-EEEe-------CCCcEEEEecCC-cEEEEeccC
Q 026118           22 VLYTATGDGWIKRMHPNGTWEDWHQV---GSQSLLGLTTTKENNVI-IVCD-------SQQGLLKVSEEG-VTVLVSQFN   89 (243)
Q Consensus        22 ~l~~~~~~~~i~~~~~~g~~~~~~~~---~~~~~~~i~~~~~g~l~-~v~~-------~~~gl~~~~~~g-~~~~~~~~~   89 (243)
                      .+|+- .+|.+.+++.++ .....-.   ..... ..+++++|+.+ |+..       ....|+..+..+ .+.+.   .
T Consensus       322 ~~~~v-~~G~l~~~~~~~-~~pv~g~~g~~~~vs-spaiSpdG~~vA~v~~~~~~~~d~~s~Lwv~~~gg~~~~lt---~  395 (591)
T PRK13616        322 GLHAL-VDGSLVSVDGQG-VTPVPGAFGQMGNIT-SAALSRSGRQVAAVVTLGRGAPDPASSLWVGPLGGVAVQVL---E  395 (591)
T ss_pred             cceEE-ECCeEEEecCCC-eeeCCCccccccCcc-cceECCCCCEEEEEEeecCCCCCcceEEEEEeCCCcceeee---c
Confidence            45543 367777775322 2222111   11233 67888999863 3331       112466655333 33332   1


Q ss_pred             CCcccCCccEEEcCCC-cEEEEeCCCCCCcccccccccccCCCceEEEEeCCCCeeEEeeccccccceEEEcCCCCEEEE
Q 026118           90 GSQLRFANDVIEASDG-SLYFTVSSTKFTPAEYYLDLVSGEPHGVLLKYDPSTNQTSLVLDGLYFANGVALSEDERFLVV  168 (243)
Q Consensus        90 ~~~~~~~~~l~~d~~G-~l~v~~~~~~~~~~~~~~~~~~~~~~g~v~~~~~~~~~~~~~~~~~~~~~gi~~~~dg~~l~v  168 (243)
                      +.....|   .++++| .+|+...+...      .-+......+.++.+..++++.+.  .-...+..+.+++||+.+.+
T Consensus       396 g~~~t~P---sWspDG~~lw~v~dg~~~------~~v~~~~~~gql~~~~vd~ge~~~--~~~g~Issl~wSpDG~RiA~  464 (591)
T PRK13616        396 GHSLTRP---SWSLDADAVWVVVDGNTV------VRVIRDPATGQLARTPVDASAVAS--RVPGPISELQLSRDGVRAAM  464 (591)
T ss_pred             CCCCCCc---eECCCCCceEEEecCcce------EEEeccCCCceEEEEeccCchhhh--ccCCCcCeEEECCCCCEEEE
Confidence            2223334   789985 58887432100      000111234567777666665543  11234778999999998877


Q ss_pred             EEcCCCeEEEEEe---ecC--CCcceEEeccCCCCCCCceEECCCCCEEEEEecC
Q 026118          169 CESWKFRCVKHFL---KVS--GRTDREIFIDNLPGGPDNVNLARDGSFWISIIKM  218 (243)
Q Consensus       169 ~~~~~~~i~~~~~---~~~--~~~~~~~~~~~~~~~~~~i~~d~~G~lwv~~~~~  218 (243)
                      ...  ++|+..-+   .++  .+.....+.......+..+..-.++.|.++....
T Consensus       465 i~~--g~v~Va~Vvr~~~G~~~l~~~~~l~~~l~~~~~~l~W~~~~~L~V~~~~~  517 (591)
T PRK13616        465 IIG--GKVYLAVVEQTEDGQYALTNPREVGPGLGDTAVSLDWRTGDSLVVGRSDP  517 (591)
T ss_pred             EEC--CEEEEEEEEeCCCCceeecccEEeecccCCccccceEecCCEEEEEecCC
Confidence            643  56776332   222  1222222322222234557777788888776543

>KOG0646 consensus WD40 repeat protein [General function prediction only]

Probab=94.42  E-value=2.8  Score=35.63  Aligned_cols=146  Identities=12%  Similarity=0.118  Sum_probs=75.2

Q ss_pred             ccEEEcCCCcEEE-EeCCCcEEEEc------c--CCceeEecccC--CccccceEEc---cCCCEEEEEeCCCcEEEEe-
Q 026118           13 EDVSVDGNGVLYT-ATGDGWIKRMH------P--NGTWEDWHQVG--SQSLLGLTTT---KENNVIIVCDSQQGLLKVS-   77 (243)
Q Consensus        13 ~~i~~d~~g~l~~-~~~~~~i~~~~------~--~g~~~~~~~~~--~~~~~~i~~~---~~g~l~~v~~~~~gl~~~~-   77 (243)
                      -+|.+..||.+++ +..||.|+.+.      +  ++.++.+..-.  ..+.+.|..+   .+.++ |.+..+.-+..++ 
T Consensus       127 TcL~fs~dgs~iiTgskDg~V~vW~l~~lv~a~~~~~~~p~~~f~~HtlsITDl~ig~Gg~~~rl-~TaS~D~t~k~wdl  205 (476)
T KOG0646|consen  127 TCLKFSDDGSHIITGSKDGAVLVWLLTDLVSADNDHSVKPLHIFSDHTLSITDLQIGSGGTNARL-YTASEDRTIKLWDL  205 (476)
T ss_pred             eEEEEeCCCcEEEecCCCccEEEEEEEeecccccCCCccceeeeccCcceeEEEEecCCCccceE-EEecCCceEEEEEe
Confidence            3566777775554 44788887765      1  22222211100  1122244443   33455 6666443344455 


Q ss_pred             cCCcEEEEeccCCCcccCCccEEEcCCCc-EEEEeCCCCCCcccccccccccCCCceEEEEeC-----------------
Q 026118           78 EEGVTVLVSQFNGSQLRFANDVIEASDGS-LYFTVSSTKFTPAEYYLDLVSGEPHGVLLKYDP-----------------  139 (243)
Q Consensus        78 ~~g~~~~~~~~~~~~~~~~~~l~~d~~G~-l~v~~~~~~~~~~~~~~~~~~~~~~g~v~~~~~-----------------  139 (243)
                      ..|...+....    ...+.++++||.++ +|+++..                  |.|+..+.                 
T Consensus       206 S~g~LLlti~f----p~si~av~lDpae~~~yiGt~~------------------G~I~~~~~~~~~~~~~~v~~k~~~~  263 (476)
T KOG0646|consen  206 SLGVLLLTITF----PSSIKAVALDPAERVVYIGTEE------------------GKIFQNLLFKLSGQSAGVNQKGRHE  263 (476)
T ss_pred             ccceeeEEEec----CCcceeEEEcccccEEEecCCc------------------ceEEeeehhcCCccccccccccccc
Confidence            44521111111    13567889999765 7776543                  23333222                 


Q ss_pred             CCCeeEEeecccc--ccceEEEcCCCCEEEEEEcCCCeEEEEEee
Q 026118          140 STNQTSLVLDGLY--FANGVALSEDERFLVVCESWKFRCVKHFLK  182 (243)
Q Consensus       140 ~~~~~~~~~~~~~--~~~gi~~~~dg~~l~v~~~~~~~i~~~~~~  182 (243)
                      ...+...+.....  ....++++-||. |.++...++.+..+|+.
T Consensus       264 ~~t~~~~~~Gh~~~~~ITcLais~Dgt-lLlSGd~dg~VcvWdi~  307 (476)
T KOG0646|consen  264 ENTQINVLVGHENESAITCLAISTDGT-LLLSGDEDGKVCVWDIY  307 (476)
T ss_pred             ccceeeeeccccCCcceeEEEEecCcc-EEEeeCCCCCEEEEecc
Confidence            1111222222222  456799999999 77777778899998875

>TIGR02276 beta_rpt_yvtn 40-residue YVTN family beta-propeller repeat

Probab=94.34  E-value=0.32  Score=26.30  Aligned_cols=30  Identities=23%  Similarity=0.194  Sum_probs=21.3

Q ss_pred             CceEEEEeCCCCeeEEeeccccccceEEEc
Q 026118          131 HGVLLKYDPSTNQTSLVLDGLYFANGVALS  160 (243)
Q Consensus       131 ~g~v~~~~~~~~~~~~~~~~~~~~~gi~~~  160 (243)
                      .+.|..+|+.+++..........|.+|+++
T Consensus        13 ~~~v~~id~~~~~~~~~i~vg~~P~~i~~~   42 (42)
T TIGR02276        13 SNTVSVIDTATNKVIATIPVGGYPFGVAVS   42 (42)
T ss_pred             CCEEEEEECCCCeEEEEEECCCCCceEEeC
Confidence            457899999877665544445678888764

This repeat of about 40 amino acids is found in up to 14 copies per protein. Archaea Methanosarcina mazei and Methanosarcina acetivorans each have over 10 genes that encode tandem copies of this repeat, which is also found in other species. PSIPRED predicts with high confidence that each 40-residue repeats contains four beta strands. This model overlaps somewhat with the NHL repeat (Pfam pfam01436) and also shows sequence similarity to the WD domain, G-beta repeat (Pfam pfam00400).

>KOG0275 consensus Conserved WD40 repeat-containing protein [General function prediction only]

Probab=94.15  E-value=0.71  Score=37.37  Aligned_cols=150  Identities=11%  Similarity=0.121  Sum_probs=83.7

Q ss_pred             CCcccEEEcCCCcEEEE-eCCCcEEEEc-cCCceeEecccC--------CccccceEEccCCCEEEEEeCCCcEEEEe-c
Q 026118           10 NHPEDVSVDGNGVLYTA-TGDGWIKRMH-PNGTWEDWHQVG--------SQSLLGLTTTKENNVIIVCDSQQGLLKVS-E   78 (243)
Q Consensus        10 ~~p~~i~~d~~g~l~~~-~~~~~i~~~~-~~g~~~~~~~~~--------~~~~~~i~~~~~g~l~~v~~~~~gl~~~~-~   78 (243)
                      ..+++..+.|||...++ .-+|-|-.++ .+|+++.-....        ..+..+|.|+.|-.++..+..++.+-.+. .
T Consensus       214 Sh~EcA~FSPDgqyLvsgSvDGFiEVWny~~GKlrKDLkYQAqd~fMMmd~aVlci~FSRDsEMlAsGsqDGkIKvWri~  293 (508)
T KOG0275|consen  214 SHVECARFSPDGQYLVSGSVDGFIEVWNYTTGKLRKDLKYQAQDNFMMMDDAVLCISFSRDSEMLASGSQDGKIKVWRIE  293 (508)
T ss_pred             cchhheeeCCCCceEeeccccceeeeehhccchhhhhhhhhhhcceeecccceEEEeecccHHHhhccCcCCcEEEEEEe
Confidence            67999999999975554 4778888888 566654321110        11222778888877723333222333333 5


Q ss_pred             CC--cEEEEeccCCCcccCCccEEEcCCCcEEEEeCCCCCCcccccccccccCCCceEEEE-eCCCCeeE-Eeecccccc
Q 026118           79 EG--VTVLVSQFNGSQLRFANDVIEASDGSLYFTVSSTKFTPAEYYLDLVSGEPHGVLLKY-DPSTNQTS-LVLDGLYFA  154 (243)
Q Consensus        79 ~g--~~~~~~~~~~~~~~~~~~l~~d~~G~l~v~~~~~~~~~~~~~~~~~~~~~~g~v~~~-~~~~~~~~-~~~~~~~~~  154 (243)
                      +|  .+.+...    ....+.++.++.|+.-..+.+.                  ....|+ ..++|+.. .+-......
T Consensus       294 tG~ClRrFdrA----HtkGvt~l~FSrD~SqiLS~sf------------------D~tvRiHGlKSGK~LKEfrGHsSyv  351 (508)
T KOG0275|consen  294 TGQCLRRFDRA----HTKGVTCLSFSRDNSQILSASF------------------DQTVRIHGLKSGKCLKEFRGHSSYV  351 (508)
T ss_pred             cchHHHHhhhh----hccCeeEEEEccCcchhhcccc------------------cceEEEeccccchhHHHhcCccccc
Confidence            55  3333211    1124567788888765554321                  122232 33334322 222334566


Q ss_pred             ceEEEcCCCCEEEEEEcCCCeEEEEEee
Q 026118          155 NGVALSEDERFLVVCESWKFRCVKHFLK  182 (243)
Q Consensus       155 ~gi~~~~dg~~l~v~~~~~~~i~~~~~~  182 (243)
                      +-..|++||..+.-+ ..++.|-.++..
T Consensus       352 n~a~ft~dG~~iisa-SsDgtvkvW~~K  378 (508)
T KOG0275|consen  352 NEATFTDDGHHIISA-SSDGTVKVWHGK  378 (508)
T ss_pred             cceEEcCCCCeEEEe-cCCccEEEecCc
Confidence            778999999965544 566788877754

>KOG0319 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]

Probab=94.09  E-value=1.5  Score=39.29  Aligned_cols=109  Identities=11%  Similarity=0.046  Sum_probs=67.7

Q ss_pred             eEEccCCCEEEEEeCCCcEEEEe-cCC-cEEEEeccCCCcccCCccEEEcCCCcEEEEeCCCCCCcccccccccccCCCc
Q 026118           55 LTTTKENNVIIVCDSQQGLLKVS-EEG-VTVLVSQFNGSQLRFANDVIEASDGSLYFTVSSTKFTPAEYYLDLVSGEPHG  132 (243)
Q Consensus        55 i~~~~~g~l~~v~~~~~gl~~~~-~~g-~~~~~~~~~~~~~~~~~~l~~d~~G~l~v~~~~~~~~~~~~~~~~~~~~~~g  132 (243)
                      ++++++|+.||. .....|..++ .++ .. +.. ..........++++++|+.+.++-..                 ..
T Consensus        25 ~~~s~nG~~L~t-~~~d~Vi~idv~t~~~~-l~s-~~~ed~d~ita~~l~~d~~~L~~a~r-----------------s~   84 (775)
T KOG0319|consen   25 VAWSSNGQHLYT-ACGDRVIIIDVATGSIA-LPS-GSNEDEDEITALALTPDEEVLVTASR-----------------SQ   84 (775)
T ss_pred             eeECCCCCEEEE-ecCceEEEEEccCCcee-ccc-CCccchhhhheeeecCCccEEEEeec-----------------cc
Confidence            678999998444 4456788888 777 32 221 11122245567889999876665322                 11


Q ss_pred             eEEEEeCCCCeeEEeecc-ccc-cceEEEcCCCCEEEEEEcCCCeEEEEEeecC
Q 026118          133 VLLKYDPSTNQTSLVLDG-LYF-ANGVALSEDERFLVVCESWKFRCVKHFLKVS  184 (243)
Q Consensus       133 ~v~~~~~~~~~~~~~~~~-~~~-~~gi~~~~dg~~l~v~~~~~~~i~~~~~~~~  184 (243)
                      -+-.+...++++.+.... ... ...|+|+|.+. |..+....+.+-++|+..+
T Consensus        85 llrv~~L~tgk~irswKa~He~Pvi~ma~~~~g~-LlAtggaD~~v~VWdi~~~  137 (775)
T KOG0319|consen   85 LLRVWSLPTGKLIRSWKAIHEAPVITMAFDPTGT-LLATGGADGRVKVWDIKNG  137 (775)
T ss_pred             eEEEEEcccchHhHhHhhccCCCeEEEEEcCCCc-eEEeccccceEEEEEeeCC
Confidence            233355556666554433 122 35799999995 7777667788999998763

>KOG0645 consensus WD40 repeat protein [General function prediction only]

Probab=94.08  E-value=2.4  Score=33.63  Aligned_cols=111  Identities=13%  Similarity=0.131  Sum_probs=64.9

Q ss_pred             ceEEccC-CCEEEEEeCCCcEEEEecC-C-cEEEEeccCCCcccCCccEEEcCCCcEEEEeCCCCCCcccccccccccCC
Q 026118           54 GLTTTKE-NNVIIVCDSQQGLLKVSEE-G-VTVLVSQFNGSQLRFANDVIEASDGSLYFTVSSTKFTPAEYYLDLVSGEP  130 (243)
Q Consensus        54 ~i~~~~~-g~l~~v~~~~~gl~~~~~~-g-~~~~~~~~~~~~~~~~~~l~~d~~G~l~v~~~~~~~~~~~~~~~~~~~~~  130 (243)
                      .++.+|. |.+|+.+...+.|..++.. + .-.............+..++..|.|++..+-+-                 
T Consensus        19 ~~awhp~~g~ilAscg~Dk~vriw~~~~~~s~~ck~vld~~hkrsVRsvAwsp~g~~La~aSF-----------------   81 (312)
T KOG0645|consen   19 SVAWHPGKGVILASCGTDKAVRIWSTSSGDSWTCKTVLDDGHKRSVRSVAWSPHGRYLASASF-----------------   81 (312)
T ss_pred             EEEeccCCceEEEeecCCceEEEEecCCCCcEEEEEeccccchheeeeeeecCCCcEEEEeec-----------------
Confidence            6777776 7764555544445555533 3 111122233334567889999999996655321                 


Q ss_pred             CceEEEEeCCCCeeEEee--c-cccccceEEEcCCCCEEEEEEcCCCeEEEEEee
Q 026118          131 HGVLLKYDPSTNQTSLVL--D-GLYFANGVALSEDERFLVVCESWKFRCVKHFLK  182 (243)
Q Consensus       131 ~g~v~~~~~~~~~~~~~~--~-~~~~~~gi~~~~dg~~l~v~~~~~~~i~~~~~~  182 (243)
                      ...+..+....++++.+.  + ......+++|+++|++|-.+ ..+.+|+.+..+
T Consensus        82 D~t~~Iw~k~~~efecv~~lEGHEnEVK~Vaws~sG~~LATC-SRDKSVWiWe~d  135 (312)
T KOG0645|consen   82 DATVVIWKKEDGEFECVATLEGHENEVKCVAWSASGNYLATC-SRDKSVWIWEID  135 (312)
T ss_pred             cceEEEeecCCCceeEEeeeeccccceeEEEEcCCCCEEEEe-eCCCeEEEEEec
Confidence            123333333335555442  2 23456789999999977666 456788887765

>KOG1963 consensus WD40 repeat protein [General function prediction only]

Probab=94.01  E-value=3.6  Score=37.56  Aligned_cols=144  Identities=17%  Similarity=0.185  Sum_probs=76.7

Q ss_pred             cEEEcCCCcEEEE-eCCCcEEEEccCC--------ceeEecccCCccccceEEccCCCEEEEEeCCCcEE-EEe-cCCcE
Q 026118           14 DVSVDGNGVLYTA-TGDGWIKRMHPNG--------TWEDWHQVGSQSLLGLTTTKENNVIIVCDSQQGLL-KVS-EEGVT   82 (243)
Q Consensus        14 ~i~~d~~g~l~~~-~~~~~i~~~~~~g--------~~~~~~~~~~~~~~~i~~~~~g~l~~v~~~~~gl~-~~~-~~g~~   82 (243)
                      +.+..++++...+ ..+|+|+.+..-+        +...|..  .... +++++.+|..|+.+.. .+++ ++. .++-+
T Consensus       210 ~~~~spn~~~~Aa~d~dGrI~vw~d~~~~~~~~t~t~lHWH~--~~V~-~L~fS~~G~~LlSGG~-E~VLv~Wq~~T~~k  285 (792)
T KOG1963|consen  210 CVALSPNERYLAAGDSDGRILVWRDFGSSDDSETCTLLHWHH--DEVN-SLSFSSDGAYLLSGGR-EGVLVLWQLETGKK  285 (792)
T ss_pred             eEEeccccceEEEeccCCcEEEEeccccccccccceEEEecc--cccc-eeEEecCCceEeeccc-ceEEEEEeecCCCc
Confidence            3555677765544 4678888775211        1222332  2334 8999999998676654 4544 444 44433


Q ss_pred             EEEeccCCCcccCCccEEEcCCCcEEEEeCCCCCCcccccccccccCCCceEEEEeCCCCeeEEeec------------c
Q 026118           83 VLVSQFNGSQLRFANDVIEASDGSLYFTVSSTKFTPAEYYLDLVSGEPHGVLLKYDPSTNQTSLVLD------------G  150 (243)
Q Consensus        83 ~~~~~~~~~~~~~~~~l~~d~~G~l~v~~~~~~~~~~~~~~~~~~~~~~g~v~~~~~~~~~~~~~~~------------~  150 (243)
                      ++....    ...+.++.++||+++|..-..                 ++.|..+...+-+......            .
T Consensus       286 qfLPRL----gs~I~~i~vS~ds~~~sl~~~-----------------DNqI~li~~~dl~~k~tIsgi~~~~~~~k~~~  344 (792)
T KOG1963|consen  286 QFLPRL----GSPILHIVVSPDSDLYSLVLE-----------------DNQIHLIKASDLEIKSTISGIKPPTPSTKTRP  344 (792)
T ss_pred             cccccc----CCeeEEEEEcCCCCeEEEEec-----------------CceEEEEeccchhhhhhccCccCCCccccccc
Confidence            332211    123457789999988865322                 2344444442222211110            1


Q ss_pred             ccccceEEEcCCCCEEEEEEcCCCeEEEEEeec
Q 026118          151 LYFANGVALSEDERFLVVCESWKFRCVKHFLKV  183 (243)
Q Consensus       151 ~~~~~gi~~~~dg~~l~v~~~~~~~i~~~~~~~  183 (243)
                      ...+.++.++|--+ ..+-+...+.|--||+..
T Consensus       345 ~~l~t~~~idpr~~-~~vln~~~g~vQ~ydl~t  376 (792)
T KOG1963|consen  345 QSLTTGVSIDPRTN-SLVLNGHPGHVQFYDLYT  376 (792)
T ss_pred             cccceeEEEcCCCC-ceeecCCCceEEEEeccc
Confidence            23456788888444 233334556777777754

>TIGR03074 PQQ_membr_DH membrane-bound PQQ-dependent dehydrogenase, glucose/quinate/shikimate family

Probab=93.96  E-value=5.3  Score=37.10  Aligned_cols=60  Identities=15%  Similarity=0.189  Sum_probs=37.1

Q ss_pred             CCcEEEEeCCCcEEEEc-cCCceeEecccCCc--------cccceEEc-----------------cCCCEEEEEeCCCcE
Q 026118           20 NGVLYTATGDGWIKRMH-PNGTWEDWHQVGSQ--------SLLGLTTT-----------------KENNVIIVCDSQQGL   73 (243)
Q Consensus        20 ~g~l~~~~~~~~i~~~~-~~g~~~~~~~~~~~--------~~~~i~~~-----------------~~g~l~~v~~~~~gl   73 (243)
                      ++.||+++..+.|+.+| .+|+..-.......        ...|+++-                 .++++ |+.+.+..|
T Consensus       194 gg~lYv~t~~~~V~ALDa~TGk~lW~~d~~~~~~~~~~~~~cRGvay~~~p~~~~~~~~~~~p~~~~~rV-~~~T~Dg~L  272 (764)
T TIGR03074       194 GDTLYLCTPHNKVIALDAATGKEKWKFDPKLKTEAGRQHQTCRGVSYYDAPAAAAGPAAPAAPADCARRI-ILPTSDARL  272 (764)
T ss_pred             CCEEEEECCCCeEEEEECCCCcEEEEEcCCCCcccccccccccceEEecCCcccccccccccccccCCEE-EEecCCCeE
Confidence            78999999888999999 56764432111100        01122221                 12345 888877789


Q ss_pred             EEEe-cCC
Q 026118           74 LKVS-EEG   80 (243)
Q Consensus        74 ~~~~-~~g   80 (243)
                      +.+| .+|
T Consensus       273 iALDA~TG  280 (764)
T TIGR03074       273 IALDADTG  280 (764)
T ss_pred             EEEECCCC
Confidence            9999 777

This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Members of this family have several predicted transmembrane helices in the N-terminal region, and include the quinoprotein glucose dehydrogenase (EC 1.1.5.2) of Escherichia coli and the quinate/shikimate dehydrogenase of Acinetobacter sp. ADP1 (EC 1.1.99.25). Sequences closely related except for the absense of the N-terminal hydrophobic region, scoring in the gray zone between the trusted and noise cutoffs, include PQQ-dependent glycerol (EC 1.1.99.22) and and other polyol (sugar alcohol) dehydrogenases.

>KOG0283 consensus WD40 repeat-containing protein [Function unknown]

Probab=93.93  E-value=4.8  Score=36.53  Aligned_cols=142  Identities=15%  Similarity=0.063  Sum_probs=78.8

Q ss_pred             cEEEcCCCcEEEEeCCCcEEEEccC--CceeEecccCCccccceEEccC-CCEEEEEeCCCc-EEEEe-cCC-cEEEEec
Q 026118           14 DVSVDGNGVLYTATGDGWIKRMHPN--GTWEDWHQVGSQSLLGLTTTKE-NNVIIVCDSQQG-LLKVS-EEG-VTVLVSQ   87 (243)
Q Consensus        14 ~i~~d~~g~l~~~~~~~~i~~~~~~--g~~~~~~~~~~~~~~~i~~~~~-g~l~~v~~~~~g-l~~~~-~~g-~~~~~~~   87 (243)
                      .|.+..++.|..+.-|..|..|++.  .....|.- ..... +++|.|- .++ |+...-++ +-.++ .+. +....  
T Consensus       374 DlSWSKn~fLLSSSMDKTVRLWh~~~~~CL~~F~H-ndfVT-cVaFnPvDDry-FiSGSLD~KvRiWsI~d~~Vv~W~--  448 (712)
T KOG0283|consen  374 DLSWSKNNFLLSSSMDKTVRLWHPGRKECLKVFSH-NDFVT-CVAFNPVDDRY-FISGSLDGKVRLWSISDKKVVDWN--  448 (712)
T ss_pred             ecccccCCeeEeccccccEEeecCCCcceeeEEec-CCeeE-EEEecccCCCc-EeecccccceEEeecCcCeeEeeh--
Confidence            4555566667766666667777643  33444432 13344 8999974 455 55443334 44444 443 22111  


Q ss_pred             cCCCcccCCccEEEcCCCcEEE-EeCCCCCCcccccccccccCCCceEEEEeCCCCeeEEee----c-----cccccceE
Q 026118           88 FNGSQLRFANDVIEASDGSLYF-TVSSTKFTPAEYYLDLVSGEPHGVLLKYDPSTNQTSLVL----D-----GLYFANGV  157 (243)
Q Consensus        88 ~~~~~~~~~~~l~~d~~G~l~v-~~~~~~~~~~~~~~~~~~~~~~g~v~~~~~~~~~~~~~~----~-----~~~~~~gi  157 (243)
                       +-  ...+..+++.|||...+ ++                  ..|....|+....++..-.    .     ......|+
T Consensus       449 -Dl--~~lITAvcy~PdGk~avIGt------------------~~G~C~fY~t~~lk~~~~~~I~~~~~Kk~~~~rITG~  507 (712)
T KOG0283|consen  449 -DL--RDLITAVCYSPDGKGAVIGT------------------FNGYCRFYDTEGLKLVSDFHIRLHNKKKKQGKRITGL  507 (712)
T ss_pred             -hh--hhhheeEEeccCCceEEEEE------------------eccEEEEEEccCCeEEEeeeEeeccCccccCceeeee
Confidence             11  13466789999998554 43                  2355666777654443211    0     01246788


Q ss_pred             EEcCCC-CEEEEEEcCCCeEEEEEee
Q 026118          158 ALSEDE-RFLVVCESWKFRCVKHFLK  182 (243)
Q Consensus       158 ~~~~dg-~~l~v~~~~~~~i~~~~~~  182 (243)
                      .+.|.. .-+.|+ ..+.+|..||..
T Consensus       508 Q~~p~~~~~vLVT-SnDSrIRI~d~~  532 (712)
T KOG0283|consen  508 QFFPGDPDEVLVT-SNDSRIRIYDGR  532 (712)
T ss_pred             EecCCCCCeEEEe-cCCCceEEEecc
Confidence            887632 236666 456889999874

>KOG0303 consensus Actin-binding protein Coronin, contains WD40 repeats [Cytoskeleton]

Probab=93.90  E-value=3.3  Score=34.61  Aligned_cols=137  Identities=13%  Similarity=0.142  Sum_probs=70.5

Q ss_pred             CCCcEEEEc-cCCceeEecccCCccccceEEccCCCEEEEEeCC-CcEEEEe-cCC-cEEEEeccCCCcccCCccEEEcC
Q 026118           28 GDGWIKRMH-PNGTWEDWHQVGSQSLLGLTTTKENNVIIVCDSQ-QGLLKVS-EEG-VTVLVSQFNGSQLRFANDVIEAS  103 (243)
Q Consensus        28 ~~~~i~~~~-~~g~~~~~~~~~~~~~~~i~~~~~g~l~~v~~~~-~gl~~~~-~~g-~~~~~~~~~~~~~~~~~~l~~d~  103 (243)
                      .+..|..++ .+|....-........ ++.++.||.+ ++++.. +.|..+| .+| .........|   ..+..+.+-.
T Consensus       152 ~Dn~v~iWnv~tgeali~l~hpd~i~-S~sfn~dGs~-l~TtckDKkvRv~dpr~~~~v~e~~~heG---~k~~Raifl~  226 (472)
T KOG0303|consen  152 SDNTVSIWNVGTGEALITLDHPDMVY-SMSFNRDGSL-LCTTCKDKKVRVIDPRRGTVVSEGVAHEG---AKPARAIFLA  226 (472)
T ss_pred             CCceEEEEeccCCceeeecCCCCeEE-EEEeccCCce-eeeecccceeEEEcCCCCcEeeecccccC---CCcceeEEec
Confidence            455666666 3343221122223345 8899999998 565544 5677777 566 3222211222   2233445667


Q ss_pred             CCcEEEEeCCCCCCcccccccccccCCCc-eEEEEeCCCCeeEEeeccccccceE---EEcCCCCEEEEEEcCCCeEEEE
Q 026118          104 DGSLYFTVSSTKFTPAEYYLDLVSGEPHG-VLLKYDPSTNQTSLVLDGLYFANGV---ALSEDERFLVVCESWKFRCVKH  179 (243)
Q Consensus       104 ~G~l~v~~~~~~~~~~~~~~~~~~~~~~g-~v~~~~~~~~~~~~~~~~~~~~~gi---~~~~dg~~l~v~~~~~~~i~~~  179 (243)
                      +|.++.+..+               +.+. .+...|+++-+.-.....+...+|+   -+|+|.+.+|++.-+++.|.-|
T Consensus       227 ~g~i~tTGfs---------------r~seRq~aLwdp~nl~eP~~~~elDtSnGvl~PFyD~dt~ivYl~GKGD~~IRYy  291 (472)
T KOG0303|consen  227 SGKIFTTGFS---------------RMSERQIALWDPNNLEEPIALQELDTSNGVLLPFYDPDTSIVYLCGKGDSSIRYF  291 (472)
T ss_pred             cCceeeeccc---------------cccccceeccCcccccCcceeEEeccCCceEEeeecCCCCEEEEEecCCcceEEE
Confidence            7775544221               1111 2333444422111112223334443   4578888899998888887777


Q ss_pred             EeecC
Q 026118          180 FLKVS  184 (243)
Q Consensus       180 ~~~~~  184 (243)
                      .+..+
T Consensus       292 Eit~d  296 (472)
T KOG0303|consen  292 EITNE  296 (472)
T ss_pred             EecCC
Confidence            66543

>COG0823 TolB Periplasmic component of the Tol biopolymer transport system [Intracellular trafficking and secretion]

Probab=93.87  E-value=3.8  Score=35.21  Aligned_cols=71  Identities=18%  Similarity=0.105  Sum_probs=47.7

Q ss_pred             EEcCCCc-EEEEeCCCCCCcccccccccccCCCceEEEEeCCCCeeEEeeccccccceEEEcCCCCEEEEEEcCC--CeE
Q 026118          100 IEASDGS-LYFTVSSTKFTPAEYYLDLVSGEPHGVLLKYDPSTNQTSLVLDGLYFANGVALSEDERFLVVCESWK--FRC  176 (243)
Q Consensus       100 ~~d~~G~-l~v~~~~~~~~~~~~~~~~~~~~~~g~v~~~~~~~~~~~~~~~~~~~~~gi~~~~dg~~l~v~~~~~--~~i  176 (243)
                      .+.|||+ +.++...               ...-.||.+|..+++..++.........-.++|||++++++....  ..|
T Consensus       244 ~fspDG~~l~f~~~r---------------dg~~~iy~~dl~~~~~~~Lt~~~gi~~~Ps~spdG~~ivf~Sdr~G~p~I  308 (425)
T COG0823         244 AFSPDGSKLAFSSSR---------------DGSPDIYLMDLDGKNLPRLTNGFGINTSPSWSPDGSKIVFTSDRGGRPQI  308 (425)
T ss_pred             cCCCCCCEEEEEECC---------------CCCccEEEEcCCCCcceecccCCccccCccCCCCCCEEEEEeCCCCCcce
Confidence            6788886 4444322               123469999999887666554444444568899999998876543  468


Q ss_pred             EEEEeecCC
Q 026118          177 VKHFLKVSG  185 (243)
Q Consensus       177 ~~~~~~~~~  185 (243)
                      ++++.++..
T Consensus       309 ~~~~~~g~~  317 (425)
T COG0823         309 YLYDLEGSQ  317 (425)
T ss_pred             EEECCCCCc
Confidence            888887643

>KOG2919 consensus Guanine nucleotide-binding protein [General function prediction only]

Probab=93.76  E-value=2.5  Score=34.45  Aligned_cols=153  Identities=10%  Similarity=0.041  Sum_probs=81.4

Q ss_pred             CCcccEEEcCCCc-EEEEeCCCcEEEEcc--CCceeE-e---cc---cCCccccceEEccCCC-EEEEEeCCCcEEEEec
Q 026118           10 NHPEDVSVDGNGV-LYTATGDGWIKRMHP--NGTWED-W---HQ---VGSQSLLGLTTTKENN-VIIVCDSQQGLLKVSE   78 (243)
Q Consensus        10 ~~p~~i~~d~~g~-l~~~~~~~~i~~~~~--~g~~~~-~---~~---~~~~~~~~i~~~~~g~-l~~v~~~~~gl~~~~~   78 (243)
                      ..+.++++.+||. ||.+ .+..|..++.  .|+... +   ..   ......+.++++|..- .+-++.+...+-.+..
T Consensus       159 taAhsL~Fs~DGeqlfaG-ykrcirvFdt~RpGr~c~vy~t~~~~k~gq~giisc~a~sP~~~~~~a~gsY~q~~giy~~  237 (406)
T KOG2919|consen  159 TAAHSLQFSPDGEQLFAG-YKRCIRVFDTSRPGRDCPVYTTVTKGKFGQKGIISCFAFSPMDSKTLAVGSYGQRVGIYND  237 (406)
T ss_pred             hhheeEEecCCCCeEeec-ccceEEEeeccCCCCCCcchhhhhcccccccceeeeeeccCCCCcceeeecccceeeeEec
Confidence            4567899999995 5555 5567888872  343111 1   11   0011222567887543 4355555554434432


Q ss_pred             CCcEEEEeccCCCcccCCccEEEcCCCcEEEEeCCCCCCcccccccccccCCCceEEEEeCCCCeeEEee---cccc-cc
Q 026118           79 EGVTVLVSQFNGSQLRFANDVIEASDGSLYFTVSSTKFTPAEYYLDLVSGEPHGVLLKYDPSTNQTSLVL---DGLY-FA  154 (243)
Q Consensus        79 ~g~~~~~~~~~~~~~~~~~~l~~d~~G~l~v~~~~~~~~~~~~~~~~~~~~~~g~v~~~~~~~~~~~~~~---~~~~-~~  154 (243)
                      ++.+++....  .....+..+.+-++|+-+++..                +....|.+.|.. ....++.   .... ..
T Consensus       238 ~~~~pl~llg--gh~gGvThL~~~edGn~lfsGa----------------Rk~dkIl~WDiR-~~~~pv~~L~rhv~~TN  298 (406)
T KOG2919|consen  238 DGRRPLQLLG--GHGGGVTHLQWCEDGNKLFSGA----------------RKDDKILCWDIR-YSRDPVYALERHVGDTN  298 (406)
T ss_pred             CCCCceeeec--ccCCCeeeEEeccCcCeecccc----------------cCCCeEEEEeeh-hccchhhhhhhhccCcc
Confidence            2212222111  1224566778889998555522                345578887765 2222221   1111 22


Q ss_pred             ceEEE--cCCCCEEEEEEcCCCeEEEEEeec
Q 026118          155 NGVAL--SEDERFLVVCESWKFRCVKHFLKV  183 (243)
Q Consensus       155 ~gi~~--~~dg~~l~v~~~~~~~i~~~~~~~  183 (243)
                      +.|.|  +|+++ +.++...++.|.++|.++
T Consensus       299 QRI~FDld~~~~-~LasG~tdG~V~vwdlk~  328 (406)
T KOG2919|consen  299 QRILFDLDPKGE-ILASGDTDGSVRVWDLKD  328 (406)
T ss_pred             ceEEEecCCCCc-eeeccCCCccEEEEecCC
Confidence            33555  47788 555656778999999875

>PF00058 Ldl_recept_b: Low-density lipoprotein receptor repeat class B; InterPro: IPR000033 The low-density lipoprotein receptor (LDLR) is the major cholesterol-carrying lipoprotein of plasma, acting to regulate cholesterol homeostasis in mammalian cells

Probab=93.65  E-value=0.45  Score=26.15  Aligned_cols=41  Identities=22%  Similarity=0.297  Sum_probs=29.1

Q ss_pred             CcEEEEeCCCCCCcccccccccccCCCceEEEEeCCCCeeEEe-eccccccceEEEcC
Q 026118          105 GSLYFTVSSTKFTPAEYYLDLVSGEPHGVLLKYDPSTNQTSLV-LDGLYFANGVALSE  161 (243)
Q Consensus       105 G~l~v~~~~~~~~~~~~~~~~~~~~~~g~v~~~~~~~~~~~~~-~~~~~~~~gi~~~~  161 (243)
                      +++|++|..                ....|.+.+.++...+.+ ...+..|.||++++
T Consensus         1 ~~iYWtD~~----------------~~~~I~~a~~dGs~~~~vi~~~l~~P~giaVD~   42 (42)
T PF00058_consen    1 GKIYWTDWS----------------QDPSIERANLDGSNRRTVISDDLQHPEGIAVDW   42 (42)
T ss_dssp             TEEEEEETT----------------TTEEEEEEETTSTSEEEEEESSTSSEEEEEEET
T ss_pred             CEEEEEECC----------------CCcEEEEEECCCCCeEEEEECCCCCcCEEEECC
Confidence            468888765                113788888886664444 56788999999874

The LDL receptor binds LDL and transports it into cells by acidic endocytosis. In order to be internalized, the receptor-ligand complex must first cluster into clathrin-coated pits. Once inside the cell, the LDLR separates from its ligand, which is degraded in the lysosomes, while the receptor returns to the cell surface []. The internal dissociation of the LDLR with its ligand is mediated by proton pumps within the walls of the endosome that lower the pH. The LDLR is a multi-domain protein, containing: The ligand-binding domain contains seven or eight 40-amino acid LDLR class A (cysteine-rich) repeats, each of which contains a coordinated calcium ion and six cysteine residues involved in disulphide bond formation []. Similar domains have been found in other extracellular and membrane proteins []. The second conserved region contains two EGF repeats, followed by six LDLR class B (YWTD) repeats, and another EGF repeat. The LDLR class B repeats each contain a conserved YWTD motif, and is predicted to form a beta-propeller structure []. This region is critical for ligand release and recycling of the receptor []. The third domain is rich in serine and threonine residues and contains clustered O-linked carbohydrate chains. The fourth domain is the hydrophobic transmembrane region. The fifth domain is the cytoplasmic tail that directs the receptor to clathrin-coated pits. LDLR is closely related in structure to several other receptors, including LRP1, LRP1b, megalin/LRP2, VLDL receptor, lipoprotein receptor, MEGF7/LRP4, and LRP8/apolipoprotein E receptor2); these proteins participate in a wide range of physiological processes, including the regulation of lipid metabolism, protection against atherosclerosis, neurodevelopment, and transport of nutrients and vitamins []. This entry represents the LDLR classB (YWTD) repeat, the structure of which has been solved []. The six YWTD repeats together fold into a six-bladed beta-propeller. Each blade of the propeller consists of four antiparallel beta-strands; the innermost strand of each blade is labeled 1 and the outermost strand, 4. The sequence repeats are offset with respect to the blades of the propeller, such that any given 40-residue YWTD repeat spans strands 24 of one propeller blade and strand 1 of the subsequent blade. This offset ensures circularization of the propeller because the last strand of the final sequence repeat acts as an innermost strand 1 of the blade that harbors strands 24 from the first sequence repeat. The repeat is found in a variety of proteins that include, vitellogenin receptor from Drosophila melanogaster, low-density lipoprotein (LDL) receptor [], preproepidermal growth factor, and nidogen (entactin).; PDB: 3S2K_A 3S8Z_A 3S8V_B 4A0P_A 3SOB_B 3S94_B 4DG6_A 3SOV_A 3SOQ_A 1NPE_A ....

>TIGR03118 PEPCTERM_chp_1 conserved hypothetical protein TIGR03118

Probab=93.55  E-value=3.4  Score=33.55  Aligned_cols=161  Identities=15%  Similarity=0.107  Sum_probs=76.2

Q ss_pred             CccccceEEccCCCEEEEEeCCCcEE-EEecC-----C-cEEEEeccCC----CcccCCccEEEcCCCcEEEEeCCCCCC
Q 026118           49 SQSLLGLTTTKENNVIIVCDSQQGLL-KVSEE-----G-VTVLVSQFNG----SQLRFANDVIEASDGSLYFTVSSTKFT  117 (243)
Q Consensus        49 ~~~~~~i~~~~~g~l~~v~~~~~gl~-~~~~~-----g-~~~~~~~~~~----~~~~~~~~l~~d~~G~l~v~~~~~~~~  117 (243)
                      .+++ ||++.|.+.+ ||++...++. .++-+     + ...+...+..    .....|.++++.....+-++...    
T Consensus        23 ~N~W-Gia~~p~~~~-WVadngT~~~TlYdg~~~~~~g~~~~L~vtiP~~~~~~~~~~PTGiVfN~~~~F~vt~~g----   96 (336)
T TIGR03118        23 RNAW-GLSYRPGGPF-WVANTGTGTATLYVGNPDTQPLVQDPLVVVIPAPPPLAAEGTPTGQVFNGSDTFVVSGEG----   96 (336)
T ss_pred             cccc-eeEecCCCCE-EEecCCcceEEeecCCcccccCCccceEEEecCCCCCCCCCCccEEEEeCCCceEEcCCC----
Confidence            4678 9999999988 9999776654 33322     4 2222222221    11235666666543222222111    


Q ss_pred             cccccccccccCCCceEEEEeCCCCee------EEeec--cccccceEEEcC--CCCEEEEEEcCCCeEEEEEeecCCCc
Q 026118          118 PAEYYLDLVSGEPHGVLLKYDPSTNQT------SLVLD--GLYFANGVALSE--DERFLVVCESWKFRCVKHFLKVSGRT  187 (243)
Q Consensus       118 ~~~~~~~~~~~~~~g~v~~~~~~~~~~------~~~~~--~~~~~~gi~~~~--dg~~l~v~~~~~~~i~~~~~~~~~~~  187 (243)
                      +... .........|.|..+.+.-+..      ..+..  ....-.|+++..  .+++||.++..+++|-+||-+-....
T Consensus        97 ~~~~-a~Fif~tEdGTisaW~p~v~~t~~~~~~~~~d~s~~gavYkGLAi~~~~~~~~LYaadF~~g~IDVFd~~f~~~~  175 (336)
T TIGR03118        97 ITGP-SRFLFVTEDGTLSGWAPALGTTRMTRAEIVVDASQQGNVYKGLAVGPTGGGDYLYAANFRQGRIDVFKGSFRPPP  175 (336)
T ss_pred             cccc-eeEEEEeCCceEEeecCcCCcccccccEEEEccCCCcceeeeeEEeecCCCceEEEeccCCCceEEecCcccccc
Confidence            0000 0000012334555555432221      11111  112235677653  46789999999999999875421111


Q ss_pred             ceEEeccC-CC--CCCCceEECCCCCEEEEEec
Q 026118          188 DREIFIDN-LP--GGPDNVNLARDGSFWISIIK  217 (243)
Q Consensus       188 ~~~~~~~~-~~--~~~~~i~~d~~G~lwv~~~~  217 (243)
                      ....|.+. .+  .-|.+|.- -.|+|||....
T Consensus       176 ~~g~F~DP~iPagyAPFnIqn-ig~~lyVtYA~  207 (336)
T TIGR03118       176 LPGSFIDPALPAGYAPFNVQN-LGGTLYVTYAQ  207 (336)
T ss_pred             CCCCccCCCCCCCCCCcceEE-ECCeEEEEEEe
Confidence            11112111 11  13555543 35678886543

This model describes and uncharacterized conserved hypothetical protein. Members are found with the C-terminal putative exosortase interaction domain, PEP-CTERM, in Nitrosospira multiformis, Rhodoferax ferrireducens, Solibacter usitatus Ellin6076, and Acidobacteria bacterium Ellin345. It is found without the PEP-CTERM domain in several other species, including Burkholderia ambifaria, Gloeobacter violaceus PCC 7421, and three copies in the Acanthamoeba polyphaga mimivirus.

>KOG0285 consensus Pleiotropic regulator 1 [RNA processing and modification]

Probab=93.41  E-value=3.9  Score=33.83  Aligned_cols=102  Identities=16%  Similarity=0.076  Sum_probs=62.3

Q ss_pred             ecccccCCcccEEEcCCCcEEEEe--CCCcEEEEc-cCCceeEecccCCccccceEEccCCCEEEEEeCCCcEEEEe-cC
Q 026118            4 LGEGIVNHPEDVSVDGNGVLYTAT--GDGWIKRMH-PNGTWEDWHQVGSQSLLGLTTTKENNVIIVCDSQQGLLKVS-EE   79 (243)
Q Consensus         4 ~~~g~~~~p~~i~~d~~g~l~~~~--~~~~i~~~~-~~g~~~~~~~~~~~~~~~i~~~~~g~l~~v~~~~~gl~~~~-~~   79 (243)
                      +..|.+..-.++++||- +-|+++  .++.+-.+| ..|+.+.-....-....++++++.--+||.+..++-|-.+| ..
T Consensus       146 Vi~gHlgWVr~vavdP~-n~wf~tgs~DrtikIwDlatg~LkltltGhi~~vr~vavS~rHpYlFs~gedk~VKCwDLe~  224 (460)
T KOG0285|consen  146 VISGHLGWVRSVAVDPG-NEWFATGSADRTIKIWDLATGQLKLTLTGHIETVRGVAVSKRHPYLFSAGEDKQVKCWDLEY  224 (460)
T ss_pred             hhhhccceEEEEeeCCC-ceeEEecCCCceeEEEEcccCeEEEeecchhheeeeeeecccCceEEEecCCCeeEEEechh
Confidence            44565666789999996 445444  567777888 67776654332112222788876555657777666677788 43


Q ss_pred             C--cEEEEeccCCCcccCCccEEEcCCCcEEEEe
Q 026118           80 G--VTVLVSQFNGSQLRFANDVIEASDGSLYFTV  111 (243)
Q Consensus        80 g--~~~~~~~~~~~~~~~~~~l~~d~~G~l~v~~  111 (243)
                      .  .+.+.    + .++.+.++...|--.+.++.
T Consensus       225 nkvIR~Yh----G-HlS~V~~L~lhPTldvl~t~  253 (460)
T KOG0285|consen  225 NKVIRHYH----G-HLSGVYCLDLHPTLDVLVTG  253 (460)
T ss_pred             hhhHHHhc----c-ccceeEEEeccccceeEEec
Confidence            3  33322    2 24567777777766666663

>PF05935 Arylsulfotrans: Arylsulfotransferase (ASST); InterPro: IPR010262 This family consists of several bacterial arylsulphotransferase proteins

Probab=93.37  E-value=5.1  Score=35.05  Aligned_cols=154  Identities=18%  Similarity=0.245  Sum_probs=73.1

Q ss_pred             cEEEEeC-----CCcEEEEccCCceeEecccCCccccceEEccCCCEEEEEeCCCcEEEEecCC-cEEEEeccCCCcccC
Q 026118           22 VLYTATG-----DGWIKRMHPNGTWEDWHQVGSQSLLGLTTTKENNVIIVCDSQQGLLKVSEEG-VTVLVSQFNGSQLRF   95 (243)
Q Consensus        22 ~l~~~~~-----~~~i~~~~~~g~~~~~~~~~~~~~~~i~~~~~g~l~~v~~~~~gl~~~~~~g-~~~~~~~~~~~~~~~   95 (243)
                      .||+...     ....+.+|.+|.++.+..........+.+.++|++ ++.. ...+..+|-.| ...... .+......
T Consensus       115 gl~~~~~~~~~~~~~~~~iD~~G~Vrw~~~~~~~~~~~~~~l~nG~l-l~~~-~~~~~e~D~~G~v~~~~~-l~~~~~~~  191 (477)
T PF05935_consen  115 GLYFVNGNDWDSSSYTYLIDNNGDVRWYLPLDSGSDNSFKQLPNGNL-LIGS-GNRLYEIDLLGKVIWEYD-LPGGYYDF  191 (477)
T ss_dssp             -EEEEEETT--BEEEEEEEETTS-EEEEE-GGGT--SSEEE-TTS-E-EEEE-BTEEEEE-TT--EEEEEE---TTEE-B
T ss_pred             cEEEEeCCCCCCCceEEEECCCccEEEEEccCccccceeeEcCCCCE-EEec-CCceEEEcCCCCEEEeee-cCCccccc
Confidence            4665443     45678888889887554322221102567789999 5554 36888998556 322222 11111122


Q ss_pred             CccEEEcCCCcEEEEeCCCCCCcccccccccccCCCceEEEEeCCCCeeEEeec--------------------------
Q 026118           96 ANDVIEASDGSLYFTVSSTKFTPAEYYLDLVSGEPHGVLLKYDPSTNQTSLVLD--------------------------  149 (243)
Q Consensus        96 ~~~l~~d~~G~l~v~~~~~~~~~~~~~~~~~~~~~~g~v~~~~~~~~~~~~~~~--------------------------  149 (243)
                      =.++...++|++.+..........    ..........|+.+| .+|++...+.                          
T Consensus       192 HHD~~~l~nGn~L~l~~~~~~~~~----~~~~~~~~D~Ivevd-~tG~vv~~wd~~d~ld~~~~~~~~~~~~~~~~~~~~  266 (477)
T PF05935_consen  192 HHDIDELPNGNLLILASETKYVDE----DKDVDTVEDVIVEVD-PTGEVVWEWDFFDHLDPYRDTVLKPYPYGDISGSGG  266 (477)
T ss_dssp             -S-EEE-TTS-EEEEEEETTEE-T----S-EE---S-EEEEE--TTS-EEEEEEGGGTS-TT--TTGGT--SSSSS-SST
T ss_pred             ccccEECCCCCEEEEEeecccccC----CCCccEecCEEEEEC-CCCCEEEEEehHHhCCcccccccccccccccccCCC
Confidence            346788899986664321000000    001112234688888 4576544311                          


Q ss_pred             --cccccceEEEcCCCCEEEEEEcCCCeEEEEEeec
Q 026118          150 --GLYFANGVALSEDERFLVVCESWKFRCVKHFLKV  183 (243)
Q Consensus       150 --~~~~~~gi~~~~dg~~l~v~~~~~~~i~~~~~~~  183 (243)
                        +..+.|++.+++..+.|.++....+.|++++...
T Consensus       267 ~~DW~H~Nsi~yd~~dd~iivSsR~~s~V~~Id~~t  302 (477)
T PF05935_consen  267 GRDWLHINSIDYDPSDDSIIVSSRHQSAVIKIDYRT  302 (477)
T ss_dssp             TSBS--EEEEEEETTTTEEEEEETTT-EEEEEE-TT
T ss_pred             CCCccccCccEEeCCCCeEEEEcCcceEEEEEECCC
Confidence              0134578999996666888887778999999554

Arylsulphotransferase (ASST) transfers a sulphate group from phenolic sulphate esters to a phenolic acceptor substrate [].; PDB: 3ETT_B 3ELQ_A 3ETS_A.

>KOG2096 consensus WD40 repeat protein [General function prediction only]

Probab=93.37  E-value=3.7  Score=33.44  Aligned_cols=144  Identities=12%  Similarity=0.075  Sum_probs=70.7

Q ss_pred             CcccEEEcCCCcEEEE-eCCCcEEEEcc-CC-----ceeEecccCCccccceEEccCCCEEEEEe-CCCcEEEEe----c
Q 026118           11 HPEDVSVDGNGVLYTA-TGDGWIKRMHP-NG-----TWEDWHQVGSQSLLGLTTTKENNVIIVCD-SQQGLLKVS----E   78 (243)
Q Consensus        11 ~p~~i~~d~~g~l~~~-~~~~~i~~~~~-~g-----~~~~~~~~~~~~~~~i~~~~~g~l~~v~~-~~~gl~~~~----~   78 (243)
                      .-.++++.+||.-+.+ ..++.|..++. +-     +..+...+...|. -++|.||-+-+.+.- .+..|+.|.    .
T Consensus        88 ~vt~~~FsSdGK~lat~~~Dr~Ir~w~~~DF~~~eHr~~R~nve~dhpT-~V~FapDc~s~vv~~~~g~~l~vyk~~K~~  166 (420)
T KOG2096|consen   88 EVTDVAFSSDGKKLATISGDRSIRLWDVRDFENKEHRCIRQNVEYDHPT-RVVFAPDCKSVVVSVKRGNKLCVYKLVKKT  166 (420)
T ss_pred             ceeeeEEcCCCceeEEEeCCceEEEEecchhhhhhhhHhhccccCCCce-EEEECCCcceEEEEEccCCEEEEEEeeecc
Confidence            3457889999964444 47777777762 21     1112222334667 888988887522222 234455553    2


Q ss_pred             CC-cEEEEeccC---CCcccCCccEEEc-CCCcEEEEeCCCCCCcccccccccccCCCceEEEEeCCCCeeEEeeccccc
Q 026118           79 EG-VTVLVSQFN---GSQLRFANDVIEA-SDGSLYFTVSSTKFTPAEYYLDLVSGEPHGVLLKYDPSTNQTSLVLDGLYF  153 (243)
Q Consensus        79 ~g-~~~~~~~~~---~~~~~~~~~l~~d-~~G~l~v~~~~~~~~~~~~~~~~~~~~~~g~v~~~~~~~~~~~~~~~~~~~  153 (243)
                      +| ...-....+   -.....+.-+-+. .++..|+...                .....|+.++..+..+..+......
T Consensus       167 dG~~~~~~v~~D~~~f~~kh~v~~i~iGiA~~~k~imsa----------------s~dt~i~lw~lkGq~L~~idtnq~~  230 (420)
T KOG2096|consen  167 DGSGSHHFVHIDNLEFERKHQVDIINIGIAGNAKYIMSA----------------SLDTKICLWDLKGQLLQSIDTNQSS  230 (420)
T ss_pred             cCCCCcccccccccccchhcccceEEEeecCCceEEEEe----------------cCCCcEEEEecCCceeeeecccccc
Confidence            44 211111111   1111111111111 2334444321                1334688888883333333333333


Q ss_pred             cceEEEcCCCCEEEEEEc
Q 026118          154 ANGVALSEDERFLVVCES  171 (243)
Q Consensus       154 ~~gi~~~~dg~~l~v~~~  171 (243)
                      ..-.+++|+|+.+-++..
T Consensus       231 n~~aavSP~GRFia~~gF  248 (420)
T KOG2096|consen  231 NYDAAVSPDGRFIAVSGF  248 (420)
T ss_pred             ccceeeCCCCcEEEEecC
Confidence            445789999997776654

>PF02333 Phytase: Phytase; InterPro: IPR003431 Phytase (3

Probab=93.34  E-value=4.2  Score=34.26  Aligned_cols=84  Identities=19%  Similarity=0.240  Sum_probs=47.8

Q ss_pred             eEEEEeCCCCeeEEeec-------cccccceEEEc--C-CCCEEEE-EEcCCCeEEEEEeecCCCcc-----eEEeccCC
Q 026118          133 VLLKYDPSTNQTSLVLD-------GLYFANGVALS--E-DERFLVV-CESWKFRCVKHFLKVSGRTD-----REIFIDNL  196 (243)
Q Consensus       133 ~v~~~~~~~~~~~~~~~-------~~~~~~gi~~~--~-dg~~l~v-~~~~~~~i~~~~~~~~~~~~-----~~~~~~~~  196 (243)
                      ++|+++++++.++.+..       ....+.|+++-  + +|+ +|+ .....+.+..|.+....-+.     .+.|  ..
T Consensus       130 ~~f~id~~~g~L~~v~~~~~p~~~~~~e~yGlcly~~~~~g~-~ya~v~~k~G~~~Qy~L~~~~~g~v~~~lVR~f--~~  206 (381)
T PF02333_consen  130 RLFRIDPDTGELTDVTDPAAPIATDLSEPYGLCLYRSPSTGA-LYAFVNGKDGRVEQYELTDDGDGKVSATLVREF--KV  206 (381)
T ss_dssp             EEEEEETTTTEEEE-CBTTC-EE-SSSSEEEEEEEE-TTT---EEEEEEETTSEEEEEEEEE-TTSSEEEEEEEEE--E-
T ss_pred             EEEEecCCCCcceEcCCCCcccccccccceeeEEeecCCCCc-EEEEEecCCceEEEEEEEeCCCCcEeeEEEEEe--cC
Confidence            68999998888776532       23346788874  3 455 443 33445778777775321111     2222  23


Q ss_pred             CCCCCceEECC-CCCEEEEEecCC
Q 026118          197 PGGPDNVNLAR-DGSFWISIIKMD  219 (243)
Q Consensus       197 ~~~~~~i~~d~-~G~lwv~~~~~~  219 (243)
                      ...+.+++.|. .|.||++.-..+
T Consensus       207 ~sQ~EGCVVDDe~g~LYvgEE~~G  230 (381)
T PF02333_consen  207 GSQPEGCVVDDETGRLYVGEEDVG  230 (381)
T ss_dssp             SS-EEEEEEETTTTEEEEEETTTE
T ss_pred             CCcceEEEEecccCCEEEecCccE
Confidence            45688888874 578999875544

1.3.8 from EC) (phytate 3-phosphatase) is a secreted enzyme which hydrolyses phytate to release inorganic phosphate. This family appears to represent a novel enzyme that shows phytase activity () and has been shown to consist of a single structural unit with a six-bladed propeller folding architecture ().; GO: 0016158 3-phytase activity; PDB: 3AMS_A 3AMR_A 1QLG_A 2POO_A 1H6L_A 1CVM_A 1POO_A.

>smart00135 LY Low-density lipoprotein-receptor YWTD domain

Probab=93.17  E-value=0.3  Score=26.46  Aligned_cols=34  Identities=29%  Similarity=0.427  Sum_probs=25.5

Q ss_pred             ccccCCcccEEEcC-CCcEEEEe-CCCcEEEEccCC
Q 026118            6 EGIVNHPEDVSVDG-NGVLYTAT-GDGWIKRMHPNG   39 (243)
Q Consensus         6 ~g~~~~p~~i~~d~-~g~l~~~~-~~~~i~~~~~~g   39 (243)
                      ...+..|.+|++|+ .+.||.++ ....|.+.+.+|
T Consensus         5 ~~~~~~~~~la~d~~~~~lYw~D~~~~~I~~~~~~g   40 (43)
T smart00135        5 SEGLGHPNGLAVDWIEGRLYWTDWGLDVIEVANLDG   40 (43)
T ss_pred             ECCCCCcCEEEEeecCCEEEEEeCCCCEEEEEeCCC
Confidence            33588999999997 55799888 456777776544

Type "B" repeats in low-density lipoprotein (LDL) receptor that plays a central role in mammalian cholesterol metabolism. Also present in a variety of molecules similar to gp300/megalin.

>KOG0299 consensus U3 snoRNP-associated protein (contains WD40 repeats) [RNA processing and modification]

Probab=93.13  E-value=4.9  Score=34.18  Aligned_cols=63  Identities=14%  Similarity=0.182  Sum_probs=45.1

Q ss_pred             ccceEEEcCCCCEEEEEEcCCCeEEEEEeecCCCcceEEecc-CCCCCCCceEECCCCC-EEEEEec
Q 026118          153 FANGVALSEDERFLVVCESWKFRCVKHFLKVSGRTDREIFID-NLPGGPDNVNLARDGS-FWISIIK  217 (243)
Q Consensus       153 ~~~gi~~~~dg~~l~v~~~~~~~i~~~~~~~~~~~~~~~~~~-~~~~~~~~i~~d~~G~-lwv~~~~  217 (243)
                      +.++++..+..+ |+.+.+.++.|..+-...+ +....++.. ...|+.+.|++..+|. ||++...
T Consensus       382 Witsla~i~~sd-L~asGS~~G~vrLW~i~~g-~r~i~~l~~ls~~GfVNsl~f~~sgk~ivagiGk  446 (479)
T KOG0299|consen  382 WITSLAVIPGSD-LLASGSWSGCVRLWKIEDG-LRAINLLYSLSLVGFVNSLAFSNSGKRIVAGIGK  446 (479)
T ss_pred             ceeeeEecccCc-eEEecCCCCceEEEEecCC-ccccceeeecccccEEEEEEEccCCCEEEEeccc
Confidence            567888888777 8888888888887777653 223333322 3567889999999998 8887543

>PF02897 Peptidase_S9_N: Prolyl oligopeptidase, N-terminal beta-propeller domain; InterPro: IPR004106 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families

Probab=93.12  E-value=4.9  Score=34.19  Aligned_cols=153  Identities=14%  Similarity=0.090  Sum_probs=72.7

Q ss_pred             ceEEccCCCEEEEE-eCCC----cEEEEe-cCCcEEEEeccCCCcccCCccEEEcCCCcE-EEEeCCCCCCccccccccc
Q 026118           54 GLTTTKENNVIIVC-DSQQ----GLLKVS-EEGVTVLVSQFNGSQLRFANDVIEASDGSL-YFTVSSTKFTPAEYYLDLV  126 (243)
Q Consensus        54 ~i~~~~~g~l~~v~-~~~~----gl~~~~-~~g~~~~~~~~~~~~~~~~~~l~~d~~G~l-~v~~~~~~~~~~~~~~~~~  126 (243)
                      .+.++++|+++.++ +.++    -++.+| .+| +.+...+..   .....+...++|+. |++........       .
T Consensus       128 ~~~~Spdg~~la~~~s~~G~e~~~l~v~Dl~tg-~~l~d~i~~---~~~~~~~W~~d~~~~~y~~~~~~~~~-------~  196 (414)
T PF02897_consen  128 GFSVSPDGKRLAYSLSDGGSEWYTLRVFDLETG-KFLPDGIEN---PKFSSVSWSDDGKGFFYTRFDEDQRT-------S  196 (414)
T ss_dssp             EEEETTTSSEEEEEEEETTSSEEEEEEEETTTT-EEEEEEEEE---EESEEEEECTTSSEEEEEECSTTTSS--------
T ss_pred             eeeECCCCCEEEEEecCCCCceEEEEEEECCCC-cCcCCcccc---cccceEEEeCCCCEEEEEEeCccccc-------c
Confidence            46788999974443 2222    267777 677 111111111   11123788888764 44432210000       0


Q ss_pred             ccCCCceEEEEeCCCCeeE--Eeeccccc---cceEEEcCCCCEEEEEEcCC---CeEEEEEeecC--CCcceEEeccCC
Q 026118          127 SGEPHGVLLKYDPSTNQTS--LVLDGLYF---ANGVALSEDERFLVVCESWK---FRCVKHFLKVS--GRTDREIFIDNL  196 (243)
Q Consensus       127 ~~~~~g~v~~~~~~~~~~~--~~~~~~~~---~~gi~~~~dg~~l~v~~~~~---~~i~~~~~~~~--~~~~~~~~~~~~  196 (243)
                      .......|++....+...+  .+......   ..++..++|+++|++.....   ..++.++....  .......+....
T Consensus       197 ~~~~~~~v~~~~~gt~~~~d~lvfe~~~~~~~~~~~~~s~d~~~l~i~~~~~~~~s~v~~~d~~~~~~~~~~~~~l~~~~  276 (414)
T PF02897_consen  197 DSGYPRQVYRHKLGTPQSEDELVFEEPDEPFWFVSVSRSKDGRYLFISSSSGTSESEVYLLDLDDGGSPDAKPKLLSPRE  276 (414)
T ss_dssp             CCGCCEEEEEEETTS-GGG-EEEEC-TTCTTSEEEEEE-TTSSEEEEEEESSSSEEEEEEEECCCTTTSS-SEEEEEESS
T ss_pred             cCCCCcEEEEEECCCChHhCeeEEeecCCCcEEEEEEecCcccEEEEEEEccccCCeEEEEeccccCCCcCCcEEEeCCC
Confidence            0011346888887765432  33332222   34788899999988865432   45777777653  122334433222


Q ss_pred             CCCCCceEECCCCCEEEEEecC
Q 026118          197 PGGPDNVNLARDGSFWISIIKM  218 (243)
Q Consensus       197 ~~~~~~i~~d~~G~lwv~~~~~  218 (243)
                      .+.- .......+.+|+-++.+
T Consensus       277 ~~~~-~~v~~~~~~~yi~Tn~~  297 (414)
T PF02897_consen  277 DGVE-YYVDHHGDRLYILTNDD  297 (414)
T ss_dssp             SS-E-EEEEEETTEEEEEE-TT
T ss_pred             CceE-EEEEccCCEEEEeeCCC
Confidence            2211 11222345588877654

Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This entry represents the beta-propeller domain found at the N-terminal of prolyl oligopeptidase, including acylamino-acid-releasing enzyme (also known as acylaminoacyl peptidase), which belong to the MEROPS peptidase family S9 (clan SC), subfamily S9A. The prolyl oligopeptidase family consist of a number of evolutionary related peptidases whose catalytic activity seems to be provided by a charge relay system similar to that of the trypsin family of serine proteases, but which evolved by independent convergent evolution. The N-terminal domain of prolyl oligopeptidases form an unusual 7-bladed beta-propeller consisting of seven 4-stranded beta-sheet motifs. Prolyl oligopeptidase is a large cytosolic enzyme involved in the maturation and degradation of peptide hormones and neuropeptides, which relate to the induction of amnesia. The enzyme contains a peptidase domain, where its catalytic triad (Ser554, His680, Asp641) is covered by the central tunnel of the N-terminal beta-propeller domain. In this way, large structured peptides are excluded from the active site, thereby protecting larger peptides and proteins from proteolysis in the cytosol []. The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. Mammalian acylaminoacyl peptidase is an exopeptidase that is a member of the same prolyl oligopeptidase family of serine peptidases. This enzyme removes acylated amino acid residues from the N terminus of oligopeptides [].; GO: 0004252 serine-type endopeptidase activity, 0006508 proteolysis; PDB: 2BKL_B 3DDU_A 1YR2_A 2XE4_A 1VZ3_A 3EQ9_A 1O6F_A 3EQ7_A 4AN0_A 1UOP_A ....

>KOG0265 consensus U5 snRNP-specific protein-like factor and related proteins [RNA processing and modification]

Probab=92.99  E-value=4  Score=32.85  Aligned_cols=66  Identities=15%  Similarity=0.303  Sum_probs=45.3

Q ss_pred             cEEEcCCCcEEEEe-CCCcEEEEccCCceeEecccC---CccccceEEccCCCEEEEEeCCCcEEEEe-cCC
Q 026118           14 DVSVDGNGVLYTAT-GDGWIKRMHPNGTWEDWHQVG---SQSLLGLTTTKENNVIIVCDSQQGLLKVS-EEG   80 (243)
Q Consensus        14 ~i~~d~~g~l~~~~-~~~~i~~~~~~g~~~~~~~~~---~~~~~~i~~~~~g~l~~v~~~~~gl~~~~-~~g   80 (243)
                      .+.++|+|..+++. .+..|+.++..|....+....   +... ++.+.+|++.++.+..++.++.+| .+|
T Consensus        52 ~~~F~P~gs~~aSgG~Dr~I~LWnv~gdceN~~~lkgHsgAVM-~l~~~~d~s~i~S~gtDk~v~~wD~~tG  122 (338)
T KOG0265|consen   52 TIKFHPDGSCFASGGSDRAIVLWNVYGDCENFWVLKGHSGAVM-ELHGMRDGSHILSCGTDKTVRGWDAETG  122 (338)
T ss_pred             EEEECCCCCeEeecCCcceEEEEeccccccceeeeccccceeE-eeeeccCCCEEEEecCCceEEEEecccc
Confidence            46678888877665 678888887444433332211   2233 677789998868887778899999 777

>KOG0294 consensus WD40 repeat-containing protein [Function unknown]

Probab=92.92  E-value=4.3  Score=32.96  Aligned_cols=135  Identities=13%  Similarity=0.092  Sum_probs=70.4

Q ss_pred             cEEEEeCCCcEEEEccCCceeE---ecccCCccccceEEccCCCEEEEEeCCCcEE-EEe-cCCcEEEEeccCCCcccCC
Q 026118           22 VLYTATGDGWIKRMHPNGTWED---WHQVGSQSLLGLTTTKENNVIIVCDSQQGLL-KVS-EEGVTVLVSQFNGSQLRFA   96 (243)
Q Consensus        22 ~l~~~~~~~~i~~~~~~g~~~~---~~~~~~~~~~~i~~~~~g~l~~v~~~~~gl~-~~~-~~g~~~~~~~~~~~~~~~~   96 (243)
                      .|..+..+|.|..++ .+.+..   +....+..+ ++++.|.|++ .++-.+.+.+ .+| -.|..-+.....    ..+
T Consensus        99 hLlS~sdDG~i~iw~-~~~W~~~~slK~H~~~Vt-~lsiHPS~KL-ALsVg~D~~lr~WNLV~Gr~a~v~~L~----~~a  171 (362)
T KOG0294|consen   99 HLLSGSDDGHIIIWR-VGSWELLKSLKAHKGQVT-DLSIHPSGKL-ALSVGGDQVLRTWNLVRGRVAFVLNLK----NKA  171 (362)
T ss_pred             heeeecCCCcEEEEE-cCCeEEeeeecccccccc-eeEecCCCce-EEEEcCCceeeeehhhcCccceeeccC----Ccc
Confidence            466666777777776 232221   222224445 8999999999 5554455544 455 344111111111    223


Q ss_pred             ccEEEcCCCcEEEEeCCCCCCcccccccccccCCCceEEEEeCCCCeeEEeeccccccceEEEcCCCCEEEEEEcCCCeE
Q 026118           97 NDVIEASDGSLYFTVSSTKFTPAEYYLDLVSGEPHGVLLKYDPSTNQTSLVLDGLYFANGVALSEDERFLVVCESWKFRC  176 (243)
Q Consensus        97 ~~l~~d~~G~l~v~~~~~~~~~~~~~~~~~~~~~~g~v~~~~~~~~~~~~~~~~~~~~~gi~~~~dg~~l~v~~~~~~~i  176 (243)
                      .-+.+++.|..|+...                  ..+|-.|..++..+.........+..+.+.. +..|.++.. +..|
T Consensus       172 t~v~w~~~Gd~F~v~~------------------~~~i~i~q~d~A~v~~~i~~~~r~l~~~~l~-~~~L~vG~d-~~~i  231 (362)
T KOG0294|consen  172 TLVSWSPQGDHFVVSG------------------RNKIDIYQLDNASVFREIENPKRILCATFLD-GSELLVGGD-NEWI  231 (362)
T ss_pred             eeeEEcCCCCEEEEEe------------------ccEEEEEecccHhHhhhhhccccceeeeecC-CceEEEecC-CceE
Confidence            3478899998665422                  2345445444333332222223334455543 444777753 4678


Q ss_pred             EEEEeec
Q 026118          177 VKHFLKV  183 (243)
Q Consensus       177 ~~~~~~~  183 (243)
                      ..+|.+.
T Consensus       232 ~~~D~ds  238 (362)
T KOG0294|consen  232 SLKDTDS  238 (362)
T ss_pred             EEeccCC
Confidence            7777664

>KOG4441 consensus Proteins containing BTB/POZ and Kelch domains, involved in regulatory/signal transduction processes [Signal transduction mechanisms; General function prediction only]

Probab=92.83  E-value=6.8  Score=35.14  Aligned_cols=182  Identities=16%  Similarity=0.186  Sum_probs=88.3

Q ss_pred             CCcEEEEe-CC------CcEEEEcc-CCceeEecccC-CccccceEEccCCCEEEEEeCCCc------EEEEec-CC-cE
Q 026118           20 NGVLYTAT-GD------GWIKRMHP-NGTWEDWHQVG-SQSLLGLTTTKENNVIIVCDSQQG------LLKVSE-EG-VT   82 (243)
Q Consensus        20 ~g~l~~~~-~~------~~i~~~~~-~g~~~~~~~~~-~~~~~~i~~~~~g~l~~v~~~~~g------l~~~~~-~g-~~   82 (243)
                      +|.||+.. .+      ..+.++|+ ..+|.....-. .+...+++. -+|.+ |+.....|      +-++|+ +. ..
T Consensus       332 ~~~lYv~GG~~~~~~~l~~ve~YD~~~~~W~~~a~M~~~R~~~~v~~-l~g~i-YavGG~dg~~~l~svE~YDp~~~~W~  409 (571)
T KOG4441|consen  332 NGKLYVVGGYDSGSDRLSSVERYDPRTNQWTPVAPMNTKRSDFGVAV-LDGKL-YAVGGFDGEKSLNSVECYDPVTNKWT  409 (571)
T ss_pred             CCEEEEEccccCCCcccceEEEecCCCCceeccCCccCccccceeEE-ECCEE-EEEeccccccccccEEEecCCCCccc
Confidence            56788655 33      23567774 44555533211 111113333 34566 87764432      677773 33 43


Q ss_pred             EEEeccCCCcccCCccEEEcCCCcEEEEeCCCCCCcccccccccccCCCceEEEEeCCCCeeEEeeccc--cccceEEEc
Q 026118           83 VLVSQFNGSQLRFANDVIEASDGSLYFTVSSTKFTPAEYYLDLVSGEPHGVLLKYDPSTNQTSLVLDGL--YFANGVALS  160 (243)
Q Consensus        83 ~~~~~~~~~~~~~~~~l~~d~~G~l~v~~~~~~~~~~~~~~~~~~~~~~g~v~~~~~~~~~~~~~~~~~--~~~~gi~~~  160 (243)
                      ....-..   ...-.++ +.-+|.+|+..-..           .....-..+.+|||.+..++..+.=.  ..-.+++.-
T Consensus       410 ~va~m~~---~r~~~gv-~~~~g~iYi~GG~~-----------~~~~~l~sve~YDP~t~~W~~~~~M~~~R~~~g~a~~  474 (571)
T KOG4441|consen  410 PVAPMLT---RRSGHGV-AVLGGKLYIIGGGD-----------GSSNCLNSVECYDPETNTWTLIAPMNTRRSGFGVAVL  474 (571)
T ss_pred             ccCCCCc---ceeeeEE-EEECCEEEEEcCcC-----------CCccccceEEEEcCCCCceeecCCcccccccceEEEE
Confidence            3221111   1122232 23478999873210           00012357899999999888764321  222344433


Q ss_pred             CCCCEEEEEEcCC-----CeEEEEEeecCCCcceEEeccCCCC-CCCceEECCCCCEEEEEecCCchhhh
Q 026118          161 EDERFLVVCESWK-----FRCVKHFLKVSGRTDREIFIDNLPG-GPDNVNLARDGSFWISIIKMDPKGIQ  224 (243)
Q Consensus       161 ~dg~~l~v~~~~~-----~~i~~~~~~~~~~~~~~~~~~~~~~-~~~~i~~d~~G~lwv~~~~~~~~~~~  224 (243)
                       +++ ||+....+     .++.+||+..   ..+..+...... ...+++.. ++.||+.....+.....
T Consensus       475 -~~~-iYvvGG~~~~~~~~~VE~ydp~~---~~W~~v~~m~~~rs~~g~~~~-~~~ly~vGG~~~~~~l~  538 (571)
T KOG4441|consen  475 -NGK-IYVVGGFDGTSALSSVERYDPET---NQWTMVAPMTSPRSAVGVVVL-GGKLYAVGGFDGNNNLN  538 (571)
T ss_pred             -CCE-EEEECCccCCCccceEEEEcCCC---CceeEcccCccccccccEEEE-CCEEEEEecccCccccc
Confidence             444 98875422     3477788754   334444322221 22334443 56687766544433333

>KOG1272 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]

Probab=92.80  E-value=4.7  Score=34.48  Aligned_cols=59  Identities=14%  Similarity=0.171  Sum_probs=34.7

Q ss_pred             cccceEEEcCCCCEEEEEEcCCCeEEEEEeecCCCcceEEeccCCCCCCCceEECCCCCEEEEE
Q 026118          152 YFANGVALSEDERFLVVCESWKFRCVKHFLKVSGRTDREIFIDNLPGGPDNVNLARDGSFWISI  215 (243)
Q Consensus       152 ~~~~gi~~~~dg~~l~v~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~i~~d~~G~lwv~~  215 (243)
                      ...++|+++++|+|+..+. .+..+-.||+..-  .+...+..  +.....++++..|.|-++.
T Consensus       294 g~V~siAv~~~G~YMaTtG-~Dr~~kIWDlR~~--~ql~t~~t--p~~a~~ls~SqkglLA~~~  352 (545)
T KOG1272|consen  294 GPVSSIAVDRGGRYMATTG-LDRKVKIWDLRNF--YQLHTYRT--PHPASNLSLSQKGLLALSY  352 (545)
T ss_pred             CCcceEEECCCCcEEeecc-cccceeEeeeccc--cccceeec--CCCccccccccccceeeec
Confidence            3457899999999776664 4577888887642  12212211  1123456777666555543

>KOG2110 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]

Probab=92.80  E-value=4.9  Score=33.28  Aligned_cols=99  Identities=13%  Similarity=0.144  Sum_probs=55.5

Q ss_pred             CcccEEE-cC-CCcEEEEe----CCCcEEEEccC--CceeEecccCCccccceEEccCCCEEEEEeCCCcEEEE-e-cCC
Q 026118           11 HPEDVSV-DG-NGVLYTAT----GDGWIKRMHPN--GTWEDWHQVGSQSLLGLTTTKENNVIIVCDSQQGLLKV-S-EEG   80 (243)
Q Consensus        11 ~p~~i~~-d~-~g~l~~~~----~~~~i~~~~~~--g~~~~~~~~~~~~~~~i~~~~~g~l~~v~~~~~gl~~~-~-~~g   80 (243)
                      +|.+++. .+ ..+-|++-    ..|.|+.+|..  ..+..+... ..+...|+|+++|++|..+...+-|.|+ . ++|
T Consensus       128 n~~gl~AlS~n~~n~ylAyp~s~t~GdV~l~d~~nl~~v~~I~aH-~~~lAalafs~~G~llATASeKGTVIRVf~v~~G  206 (391)
T KOG2110|consen  128 NPKGLCALSPNNANCYLAYPGSTTSGDVVLFDTINLQPVNTINAH-KGPLAALAFSPDGTLLATASEKGTVIRVFSVPEG  206 (391)
T ss_pred             CccceEeeccCCCCceEEecCCCCCceEEEEEcccceeeeEEEec-CCceeEEEECCCCCEEEEeccCceEEEEEEcCCc
Confidence            5554433 33 33445443    45778888832  223333322 2334389999999994444433335544 4 677


Q ss_pred             --cEEEEeccCCCcccCCccEEEcCCCcEEEEeCC
Q 026118           81 --VTVLVSQFNGSQLRFANDVIEASDGSLYFTVSS  113 (243)
Q Consensus        81 --~~~~~~~~~~~~~~~~~~l~~d~~G~l~v~~~~  113 (243)
                        +..+...   .....+.++++++++.+..+.++
T Consensus       207 ~kl~eFRRG---~~~~~IySL~Fs~ds~~L~~sS~  238 (391)
T KOG2110|consen  207 QKLYEFRRG---TYPVSIYSLSFSPDSQFLAASSN  238 (391)
T ss_pred             cEeeeeeCC---ceeeEEEEEEECCCCCeEEEecC
Confidence              3334332   22346778999999987776654

>KOG0316 consensus Conserved WD40 repeat-containing protein [Function unknown]

Probab=92.76  E-value=3.8  Score=31.96  Aligned_cols=132  Identities=11%  Similarity=0.012  Sum_probs=78.9

Q ss_pred             CCCcEEEEc-cCCcee-EecccCCccccceEEccCCCEEEEEeCCCcEEEEe-cCC-cEEEEeccCCCcccCCccEEEcC
Q 026118           28 GDGWIKRMH-PNGTWE-DWHQVGSQSLLGLTTTKENNVIIVCDSQQGLLKVS-EEG-VTVLVSQFNGSQLRFANDVIEAS  103 (243)
Q Consensus        28 ~~~~i~~~~-~~g~~~-~~~~~~~~~~~~i~~~~~g~l~~v~~~~~gl~~~~-~~g-~~~~~~~~~~~~~~~~~~l~~d~  103 (243)
                      .+..+..+| .+|++. +|....+..+ .+.|+.+-.+++.+..+..+-.+| ... ++++....+.  ...+.++.  -
T Consensus        79 gDk~v~vwDV~TGkv~Rr~rgH~aqVN-tV~fNeesSVv~SgsfD~s~r~wDCRS~s~ePiQildea--~D~V~Si~--v  153 (307)
T KOG0316|consen   79 GDKAVQVWDVNTGKVDRRFRGHLAQVN-TVRFNEESSVVASGSFDSSVRLWDCRSRSFEPIQILDEA--KDGVSSID--V  153 (307)
T ss_pred             CCceEEEEEcccCeeeeecccccceee-EEEecCcceEEEeccccceeEEEEcccCCCCccchhhhh--cCceeEEE--e
Confidence            345678888 566644 3444445556 888887777756666666788888 655 5554321111  12333333  3


Q ss_pred             CCcEEEEeCCCCCCcccccccccccCCCceEEEEeCCCCeeEEeeccccc-cceEEEcCCCCEEEEEEcCCCeEEEEEee
Q 026118          104 DGSLYFTVSSTKFTPAEYYLDLVSGEPHGVLLKYDPSTNQTSLVLDGLYF-ANGVALSEDERFLVVCESWKFRCVKHFLK  182 (243)
Q Consensus       104 ~G~l~v~~~~~~~~~~~~~~~~~~~~~~g~v~~~~~~~~~~~~~~~~~~~-~~gi~~~~dg~~l~v~~~~~~~i~~~~~~  182 (243)
                      .++.+++.+                 ..|.+-.||...|++.  .+.... .+.+.|++|++.+.++. .+..|..+|.+
T Consensus       154 ~~heIvaGS-----------------~DGtvRtydiR~G~l~--sDy~g~pit~vs~s~d~nc~La~~-l~stlrLlDk~  213 (307)
T KOG0316|consen  154 AEHEIVAGS-----------------VDGTVRTYDIRKGTLS--SDYFGHPITSVSFSKDGNCSLASS-LDSTLRLLDKE  213 (307)
T ss_pred             cccEEEeec-----------------cCCcEEEEEeecceee--hhhcCCcceeEEecCCCCEEEEee-ccceeeecccc
Confidence            455566532                 3467777887656532  222333 47899999999777764 56778878876


Q ss_pred             cC
Q 026118          183 VS  184 (243)
Q Consensus       183 ~~  184 (243)
                      .+
T Consensus       214 tG  215 (307)
T KOG0316|consen  214 TG  215 (307)
T ss_pred             hh
Confidence            43

>PF10647 Gmad1: Lipoprotein LpqB beta-propeller domain; InterPro: IPR018910 The Gmad1 domain is found associated with IPR019606 from INTERPRO, in bacterial spore formation

Probab=92.36  E-value=4.6  Score=31.98  Aligned_cols=145  Identities=13%  Similarity=0.084  Sum_probs=76.2

Q ss_pred             ceEEccCCCEEEEEe---CCCcEEEEecCC-cEEEEeccCCCcccCCccEEEcCCCcEEEEeCCCCCCcccccccccccC
Q 026118           54 GLTTTKENNVIIVCD---SQQGLLKVSEEG-VTVLVSQFNGSQLRFANDVIEASDGSLYFTVSSTKFTPAEYYLDLVSGE  129 (243)
Q Consensus        54 ~i~~~~~g~l~~v~~---~~~gl~~~~~~g-~~~~~~~~~~~~~~~~~~l~~d~~G~l~v~~~~~~~~~~~~~~~~~~~~  129 (243)
                      ..+++++|..+.+..   ....|+.....+ ...+.   .+..+..|   .+|++|.+|+.....               
T Consensus        28 s~AvS~dg~~~A~v~~~~~~~~L~~~~~~~~~~~~~---~g~~l~~P---S~d~~g~~W~v~~~~---------------   86 (253)
T PF10647_consen   28 SPAVSPDGSRVAAVSEGDGGRSLYVGPAGGPVRPVL---TGGSLTRP---SWDPDGWVWTVDDGS---------------   86 (253)
T ss_pred             ceEECCCCCeEEEEEEcCCCCEEEEEcCCCcceeec---cCCccccc---cccCCCCEEEEEcCC---------------
Confidence            778888988633333   223466655434 33322   22233344   788999999986431               


Q ss_pred             CCceEEEEeCCCCeeEEee---cccc-ccceEEEcCCCCEEEEEE--cCCCeEEEEEeecCCCc------ceEEeccCCC
Q 026118          130 PHGVLLKYDPSTNQTSLVL---DGLY-FANGVALSEDERFLVVCE--SWKFRCVKHFLKVSGRT------DREIFIDNLP  197 (243)
Q Consensus       130 ~~g~v~~~~~~~~~~~~~~---~~~~-~~~gi~~~~dg~~l~v~~--~~~~~i~~~~~~~~~~~------~~~~~~~~~~  197 (243)
                      ....+++ +...++.....   .... ....+.+++||..+-+..  ....+|+...+..+.-+      ..........
T Consensus        87 ~~~~~~~-~~~~g~~~~~~v~~~~~~~~I~~l~vSpDG~RvA~v~~~~~~~~v~va~V~r~~~g~~~~l~~~~~~~~~~~  165 (253)
T PF10647_consen   87 GGVRVVR-DSASGTGEPVEVDWPGLRGRITALRVSPDGTRVAVVVEDGGGGRVYVAGVVRDGDGVPRRLTGPRRVAPPLL  165 (253)
T ss_pred             CceEEEE-ecCCCcceeEEecccccCCceEEEEECCCCcEEEEEEecCCCCeEEEEEEEeCCCCCcceeccceEeccccc
Confidence            1112332 32224333321   1122 567899999999775553  23466776655422111      1111111112


Q ss_pred             CCCCceEECCCCCEEEEEecCCc
Q 026118          198 GGPDNVNLARDGSFWISIIKMDP  220 (243)
Q Consensus       198 ~~~~~i~~d~~G~lwv~~~~~~~  220 (243)
                      .-...++...+++|.|.....+.
T Consensus       166 ~~v~~v~W~~~~~L~V~~~~~~~  188 (253)
T PF10647_consen  166 SDVTDVAWSDDSTLVVLGRSAGG  188 (253)
T ss_pred             CcceeeeecCCCEEEEEeCCCCC
Confidence            23456777788888887766554

It is predicted to have a beta-propeller fold and to have a passive binding role rather than a catalytic function owing to the low number of conserved hydrophilic residues.

>PF06739 SBBP: Beta-propeller repeat; InterPro: IPR010620 This family is related to IPR001680 from INTERPRO and is likely to also form a beta-propeller

Probab=92.29  E-value=0.16  Score=27.32  Aligned_cols=21  Identities=5%  Similarity=0.213  Sum_probs=17.7

Q ss_pred             CCCceEECCCCCEEEEEecCC
Q 026118          199 GPDNVNLARDGSFWISIIKMD  219 (243)
Q Consensus       199 ~~~~i~~d~~G~lwv~~~~~~  219 (243)
                      .+.+|++|++|++||+....+
T Consensus        14 ~~~~IavD~~GNiYv~G~T~~   34 (38)
T PF06739_consen   14 YGNGIAVDSNGNIYVTGYTNG   34 (38)
T ss_pred             eEEEEEECCCCCEEEEEeecC
Confidence            478899999999999887654

SBBP stands for Seven Bladed Beta Propeller.

>KOG3881 consensus Uncharacterized conserved protein [Function unknown]

Probab=92.10  E-value=4  Score=33.97  Aligned_cols=118  Identities=12%  Similarity=0.013  Sum_probs=66.6

Q ss_pred             EEeCCCcEEEEccCCc---eeEecccCCccccceEEccCCCEEEEEeCCCcEEEEe-cCCcEEEEeccCCCcccCCccEE
Q 026118           25 TATGDGWIKRMHPNGT---WEDWHQVGSQSLLGLTTTKENNVIIVCDSQQGLLKVS-EEGVTVLVSQFNGSQLRFANDVI  100 (243)
Q Consensus        25 ~~~~~~~i~~~~~~g~---~~~~~~~~~~~~~~i~~~~~g~l~~v~~~~~gl~~~~-~~g~~~~~~~~~~~~~~~~~~l~  100 (243)
                      .++.-+.+..+|+..+   +..+.. ..++.+.+...++|+++|+++....+..|| ..+. .+.....+. ...+.+|.
T Consensus       221 t~T~~hqvR~YDt~~qRRPV~~fd~-~E~~is~~~l~p~gn~Iy~gn~~g~l~~FD~r~~k-l~g~~~kg~-tGsirsih  297 (412)
T KOG3881|consen  221 TITRYHQVRLYDTRHQRRPVAQFDF-LENPISSTGLTPSGNFIYTGNTKGQLAKFDLRGGK-LLGCGLKGI-TGSIRSIH  297 (412)
T ss_pred             EEecceeEEEecCcccCcceeEecc-ccCcceeeeecCCCcEEEEecccchhheecccCce-eeccccCCc-cCCcceEE
Confidence            3344566777774322   222322 245665788899999989999878899999 5552 222112221 23567788


Q ss_pred             EcCCCcEEEEeCCCCCCcccccccccccCCCceEEEEeCCCCeeEEeeccccccceEEEcCC
Q 026118          101 EASDGSLYFTVSSTKFTPAEYYLDLVSGEPHGVLLKYDPSTNQTSLVLDGLYFANGVALSED  162 (243)
Q Consensus       101 ~d~~G~l~v~~~~~~~~~~~~~~~~~~~~~~g~v~~~~~~~~~~~~~~~~~~~~~gi~~~~d  162 (243)
                      .+|.+.+..+..-                 .-.|-.+|.++..+..-..-...+++|.+.++
T Consensus       298 ~hp~~~~las~GL-----------------DRyvRIhD~ktrkll~kvYvKs~lt~il~~~~  342 (412)
T KOG3881|consen  298 CHPTHPVLASCGL-----------------DRYVRIHDIKTRKLLHKVYVKSRLTFILLRDD  342 (412)
T ss_pred             EcCCCceEEeecc-----------------ceeEEEeecccchhhhhhhhhccccEEEecCC
Confidence            8888777665321                 11344467664332211122345677777554

>KOG0273 consensus Beta-transducin family (WD-40 repeat) protein [Chromatin structure and dynamics]

Probab=91.96  E-value=7.3  Score=33.38  Aligned_cols=69  Identities=13%  Similarity=0.002  Sum_probs=49.4

Q ss_pred             CCccEEEcCCCcEEEEeCCCCCCcccccccccccCCCceEEEEeCCCCeeEEeeccccccceEEEcCCCCEEEEEEcCCC
Q 026118           95 FANDVIEASDGSLYFTVSSTKFTPAEYYLDLVSGEPHGVLLKYDPSTNQTSLVLDGLYFANGVALSEDERFLVVCESWKF  174 (243)
Q Consensus        95 ~~~~l~~d~~G~l~v~~~~~~~~~~~~~~~~~~~~~~g~v~~~~~~~~~~~~~~~~~~~~~gi~~~~dg~~l~v~~~~~~  174 (243)
                      .+.+++++|+|++..+.+                 ..+.|...+..++++-+-..+......+.|+.+|+.|-++ ...+
T Consensus       454 pVysvafS~~g~ylAsGs-----------------~dg~V~iws~~~~~l~~s~~~~~~Ifel~Wn~~G~kl~~~-~sd~  515 (524)
T KOG0273|consen  454 PVYSVAFSPNGRYLASGS-----------------LDGCVHIWSTKTGKLVKSYQGTGGIFELCWNAAGDKLGAC-ASDG  515 (524)
T ss_pred             ceEEEEecCCCcEEEecC-----------------CCCeeEeccccchheeEeecCCCeEEEEEEcCCCCEEEEE-ecCC
Confidence            467899999998777632                 3467888887777766555555667789999999855555 4567


Q ss_pred             eEEEEEe
Q 026118          175 RCVKHFL  181 (243)
Q Consensus       175 ~i~~~~~  181 (243)
                      .+..+|+
T Consensus       516 ~vcvldl  522 (524)
T KOG0273|consen  516 SVCVLDL  522 (524)
T ss_pred             CceEEEe
Confidence            7777664

>KOG0295 consensus WD40 repeat-containing protein [Function unknown]

Probab=91.87  E-value=6.5  Score=32.57  Aligned_cols=80  Identities=13%  Similarity=0.105  Sum_probs=46.9

Q ss_pred             ceEEEEeCCCCeeEE-eeccccccceEEEcCCCCEEEEEEcCCCeEEEEEeecCCCcceEEeccCCCCCCCceEECCCCC
Q 026118          132 GVLLKYDPSTNQTSL-VLDGLYFANGVALSEDERFLVVCESWKFRCVKHFLKVSGRTDREIFIDNLPGGPDNVNLARDGS  210 (243)
Q Consensus       132 g~v~~~~~~~~~~~~-~~~~~~~~~gi~~~~dg~~l~v~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~i~~d~~G~  210 (243)
                      ..|-..|..++..-. +.....+..+++|+|.|+||.-+ +.+.+|..||++...   +.......+.+...+.++.+ .
T Consensus       314 ktIk~wdv~tg~cL~tL~ghdnwVr~~af~p~Gkyi~Sc-aDDktlrvwdl~~~~---cmk~~~ah~hfvt~lDfh~~-~  388 (406)
T KOG0295|consen  314 KTIKIWDVSTGMCLFTLVGHDNWVRGVAFSPGGKYILSC-ADDKTLRVWDLKNLQ---CMKTLEAHEHFVTSLDFHKT-A  388 (406)
T ss_pred             ceEEEEeccCCeEEEEEecccceeeeeEEcCCCeEEEEE-ecCCcEEEEEeccce---eeeccCCCcceeEEEecCCC-C
Confidence            445556776675443 23345678899999999977644 567899999987531   11111122234444555443 3


Q ss_pred             EEEEEe
Q 026118          211 FWISII  216 (243)
Q Consensus       211 lwv~~~  216 (243)
                      .||.+.
T Consensus       389 p~VvTG  394 (406)
T KOG0295|consen  389 PYVVTG  394 (406)
T ss_pred             ceEEec
Confidence            466553

>PF14269 Arylsulfotran_2: Arylsulfotransferase (ASST)

Probab=91.66  E-value=6.4  Score=32.11  Aligned_cols=122  Identities=11%  Similarity=0.151  Sum_probs=61.3

Q ss_pred             ceEEccCCCEEEEEeCCCcEEEEe-cCC-cEEEEeccCC-------CcccCCccEEEc----CCCcEEEEeCCCCCCccc
Q 026118           54 GLTTTKENNVIIVCDSQQGLLKVS-EEG-VTVLVSQFNG-------SQLRFANDVIEA----SDGSLYFTVSSTKFTPAE  120 (243)
Q Consensus        54 ~i~~~~~g~l~~v~~~~~gl~~~~-~~g-~~~~~~~~~~-------~~~~~~~~l~~d----~~G~l~v~~~~~~~~~~~  120 (243)
                      ++..+.+|++|..+....-|++++ .+| +.........       .......+..+-    .+++|-+-|....     
T Consensus       148 sV~~~~~G~yLiS~R~~~~i~~I~~~tG~I~W~lgG~~~~df~~~~~~f~~QHdar~~~~~~~~~~IslFDN~~~-----  222 (299)
T PF14269_consen  148 SVDKDDDGDYLISSRNTSTIYKIDPSTGKIIWRLGGKRNSDFTLPATNFSWQHDARFLNESNDDGTISLFDNANS-----  222 (299)
T ss_pred             eeeecCCccEEEEecccCEEEEEECCCCcEEEEeCCCCCCcccccCCcEeeccCCEEeccCCCCCEEEEEcCCCC-----
Confidence            678888999844444446799999 777 4443221100       001222233333    4555655554200     


Q ss_pred             ccccccccCCCceEEEEeCCCCeeEEeecccccc--------ceEEEcCCCCEEEEEEcCCCeEEEEEeec
Q 026118          121 YYLDLVSGEPHGVLLKYDPSTNQTSLVLDGLYFA--------NGVALSEDERFLVVCESWKFRCVKHFLKV  183 (243)
Q Consensus       121 ~~~~~~~~~~~g~v~~~~~~~~~~~~~~~~~~~~--------~gi~~~~dg~~l~v~~~~~~~i~~~~~~~  183 (243)
                       .. .......+.++.+|+.+.+.+.+......+        -.+..-|+|+ ++|+....+.+..++.++
T Consensus       223 -~~-~~~~~s~~~v~~ld~~~~~~~~~~~~~~~~~~~~s~~~G~~Q~L~nGn-~li~~g~~g~~~E~~~~G  290 (299)
T PF14269_consen  223 -DF-NGTEPSRGLVLELDPETMTVTLVREYSDHPDGFYSPSQGSAQRLPNGN-VLIGWGNNGRISEFTPDG  290 (299)
T ss_pred             -CC-CCCcCCCceEEEEECCCCEEEEEEEeecCCCcccccCCCcceECCCCC-EEEecCCCceEEEECCCC
Confidence             00 112234567888998866555433211011        1233345666 666655556666665444

>KOG4378 consensus Nuclear protein COP1 [Signal transduction mechanisms]

Probab=91.53  E-value=8.6  Score=33.33  Aligned_cols=85  Identities=13%  Similarity=0.160  Sum_probs=52.5

Q ss_pred             CceEEEEeCCCCeeEEee-ccccc-cceEEEcCCCCEEEEEEcCCCeEEEEEeecCCCcceEEeccCCCCCCCceEECCC
Q 026118          131 HGVLLKYDPSTNQTSLVL-DGLYF-ANGVALSEDERFLVVCESWKFRCVKHFLKVSGRTDREIFIDNLPGGPDNVNLARD  208 (243)
Q Consensus       131 ~g~v~~~~~~~~~~~~~~-~~~~~-~~gi~~~~dg~~l~v~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~i~~d~~  208 (243)
                      .|.|..+|..+......+ ..... ..||+|+|-+..|+++--.+..|+.||.........-.+...    ...+++.++
T Consensus       186 ~G~VtlwDv~g~sp~~~~~~~HsAP~~gicfspsne~l~vsVG~Dkki~~yD~~s~~s~~~l~y~~P----lstvaf~~~  261 (673)
T KOG4378|consen  186 KGAVTLWDVQGMSPIFHASEAHSAPCRGICFSPSNEALLVSVGYDKKINIYDIRSQASTDRLTYSHP----LSTVAFSEC  261 (673)
T ss_pred             CCeEEEEeccCCCcccchhhhccCCcCcceecCCccceEEEecccceEEEeecccccccceeeecCC----cceeeecCC
Confidence            467777887743332221 22223 368999998887999888889999999764333333232211    244777778


Q ss_pred             CCEEEEEecCC
Q 026118          209 GSFWISIIKMD  219 (243)
Q Consensus       209 G~lwv~~~~~~  219 (243)
                      |.+.++.+..+
T Consensus       262 G~~L~aG~s~G  272 (673)
T KOG4378|consen  262 GTYLCAGNSKG  272 (673)
T ss_pred             ceEEEeecCCc
Confidence            87666555444

>KOG0308 consensus Conserved WD40 repeat-containing protein [Function unknown]

Probab=91.47  E-value=10  Score=33.97  Aligned_cols=182  Identities=13%  Similarity=0.084  Sum_probs=90.3

Q ss_pred             cEEE-cCCCcEEEEe-CCCcEEEEc-cCCce---eEec------cc--CCccccceEEccCCCEEEEEeCCCcE-EEEe-
Q 026118           14 DVSV-DGNGVLYTAT-GDGWIKRMH-PNGTW---EDWH------QV--GSQSLLGLTTTKENNVIIVCDSQQGL-LKVS-   77 (243)
Q Consensus        14 ~i~~-d~~g~l~~~~-~~~~i~~~~-~~g~~---~~~~------~~--~~~~~~~i~~~~~g~l~~v~~~~~gl-~~~~-   77 (243)
                      +|++ ..+..+.++. -+++|+.+| ..+..   ..+.      ..  ...+..+++..+.|.+ +++..-.+. ..+| 
T Consensus       122 cla~~ak~~~lvaSgGLD~~IflWDin~~~~~l~~s~n~~t~~sl~sG~k~siYSLA~N~t~t~-ivsGgtek~lr~wDp  200 (735)
T KOG0308|consen  122 CLAYIAKNNELVASGGLDRKIFLWDINTGTATLVASFNNVTVNSLGSGPKDSIYSLAMNQTGTI-IVSGGTEKDLRLWDP  200 (735)
T ss_pred             eeeecccCceeEEecCCCccEEEEEccCcchhhhhhccccccccCCCCCccceeeeecCCcceE-EEecCcccceEEecc
Confidence            4555 4555566554 678899888 33321   1111      11  1112225677777766 555433454 4555 


Q ss_pred             cCCcEEEEeccCCCcccCCccEEEcCCCcEEEEeCCCCCCcccccccccccCCCceEEEEeCCCCe-eEEeeccccccce
Q 026118           78 EEGVTVLVSQFNGSQLRFANDVIEASDGSLYFTVSSTKFTPAEYYLDLVSGEPHGVLLKYDPSTNQ-TSLVLDGLYFANG  156 (243)
Q Consensus        78 ~~g~~~~~~~~~~~~~~~~~~l~~d~~G~l~v~~~~~~~~~~~~~~~~~~~~~~g~v~~~~~~~~~-~~~~~~~~~~~~g  156 (243)
                      .++.+.+..  .+. ...+..+.+++||+-.++.++                 .|.|-..|..-.+ +..++......=.
T Consensus       201 rt~~kimkL--rGH-TdNVr~ll~~dDGt~~ls~sS-----------------DgtIrlWdLgqQrCl~T~~vH~e~VWa  260 (735)
T KOG0308|consen  201 RTCKKIMKL--RGH-TDNVRVLLVNDDGTRLLSASS-----------------DGTIRLWDLGQQRCLATYIVHKEGVWA  260 (735)
T ss_pred             ccccceeee--ecc-ccceEEEEEcCCCCeEeecCC-----------------CceEEeeeccccceeeeEEeccCceEE
Confidence            444332221  111 245678899999987777543                 2334334443111 1111111111224


Q ss_pred             EEEcCCCCEEEEEEcCCCeEEEEEeecCCCcceEEeccCCCCCCCceEECC-CCCEEEEEecCCc
Q 026118          157 VALSEDERFLVVCESWKFRCVKHFLKVSGRTDREIFIDNLPGGPDNVNLAR-DGSFWISIIKMDP  220 (243)
Q Consensus       157 i~~~~dg~~l~v~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~i~~d~-~G~lwv~~~~~~~  220 (243)
                      +..+++-+.+|.++ .++.|++-++...  .....++.... -..-+.... +..+|++++.+..
T Consensus       261 L~~~~sf~~vYsG~-rd~~i~~Tdl~n~--~~~tlick~da-Pv~~l~~~~~~~~~WvtTtds~I  321 (735)
T KOG0308|consen  261 LQSSPSFTHVYSGG-RDGNIYRTDLRNP--AKSTLICKEDA-PVLKLHLHEHDNSVWVTTTDSSI  321 (735)
T ss_pred             EeeCCCcceEEecC-CCCcEEecccCCc--hhheEeecCCC-chhhhhhccccCCceeeeccccc
Confidence            56667777777765 4567888777653  33333332211 112244442 2347998887653

>KOG0268 consensus Sof1-like rRNA processing protein (contains WD40 repeats) [RNA processing and modification]

Probab=90.99  E-value=1.4  Score=36.23  Aligned_cols=147  Identities=10%  Similarity=0.008  Sum_probs=81.8

Q ss_pred             ccEEEcCCC-cEEEEe-CCCcEEEEcc-CCceeEecccCCccccceEEccCCCEEEEEeCCCcEEEEe-cCCcEEEEecc
Q 026118           13 EDVSVDGNG-VLYTAT-GDGWIKRMHP-NGTWEDWHQVGSQSLLGLTTTKENNVIIVCDSQQGLLKVS-EEGVTVLVSQF   88 (243)
Q Consensus        13 ~~i~~d~~g-~l~~~~-~~~~i~~~~~-~g~~~~~~~~~~~~~~~i~~~~~g~l~~v~~~~~gl~~~~-~~g~~~~~~~~   88 (243)
                      .++-+.+-. .|..+. .++.|+.+|. .++...-.....+++ +|..+|++-.+.+++.+..+|.+| ..-.+++.. .
T Consensus       191 ~svkfNpvETsILas~~sDrsIvLyD~R~~~Pl~KVi~~mRTN-~IswnPeafnF~~a~ED~nlY~~DmR~l~~p~~v-~  268 (433)
T KOG0268|consen  191 SSVKFNPVETSILASCASDRSIVLYDLRQASPLKKVILTMRTN-TICWNPEAFNFVAANEDHNLYTYDMRNLSRPLNV-H  268 (433)
T ss_pred             eEEecCCCcchheeeeccCCceEEEecccCCccceeeeecccc-ceecCccccceeeccccccceehhhhhhcccchh-h
Confidence            345555544 344444 6788999983 333222222235667 999999776535555667899998 432122111 1


Q ss_pred             CCCcccCCccEEEcCCCcEEEEeCCCCCCcccccccccccCCCceEEEEeCCCCeeEEe--eccccccceEEEcCCCCEE
Q 026118           89 NGSQLRFANDVIEASDGSLYFTVSSTKFTPAEYYLDLVSGEPHGVLLKYDPSTNQTSLV--LDGLYFANGVALSEDERFL  166 (243)
Q Consensus        89 ~~~~~~~~~~l~~d~~G~l~v~~~~~~~~~~~~~~~~~~~~~~g~v~~~~~~~~~~~~~--~~~~~~~~gi~~~~dg~~l  166 (243)
                      . ...+.+-++.++|-|.=+++.+-               ..+-+||.++.  ++-+-+  ..-.+...++.++-|.+++
T Consensus       269 ~-dhvsAV~dVdfsptG~Efvsgsy---------------DksIRIf~~~~--~~SRdiYhtkRMq~V~~Vk~S~Dskyi  330 (433)
T KOG0268|consen  269 K-DHVSAVMDVDFSPTGQEFVSGSY---------------DKSIRIFPVNH--GHSRDIYHTKRMQHVFCVKYSMDSKYI  330 (433)
T ss_pred             c-ccceeEEEeccCCCcchhccccc---------------cceEEEeecCC--CcchhhhhHhhhheeeEEEEeccccEE
Confidence            1 11244567788899988887432               12335665554  333322  1234566788999999965


Q ss_pred             EEEEcCCCeEEEEE
Q 026118          167 VVCESWKFRCVKHF  180 (243)
Q Consensus       167 ~v~~~~~~~i~~~~  180 (243)
                      +-+ +..+.|..+.
T Consensus       331 ~SG-Sdd~nvRlWk  343 (433)
T KOG0268|consen  331 ISG-SDDGNVRLWK  343 (433)
T ss_pred             Eec-CCCcceeeee
Confidence            543 4444444443

>KOG0306 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]

Probab=90.66  E-value=13  Score=33.91  Aligned_cols=190  Identities=14%  Similarity=0.091  Sum_probs=88.1

Q ss_pred             CcccEEEcCCCcEEEEeCCCcEEEEccC--CceeEecccCCccccceEEccCCCEEEEEeCCCcEEEEe-cCC--cEEEE
Q 026118           11 HPEDVSVDGNGVLYTATGDGWIKRMHPN--GTWEDWHQVGSQSLLGLTTTKENNVIIVCDSQQGLLKVS-EEG--VTVLV   85 (243)
Q Consensus        11 ~p~~i~~d~~g~l~~~~~~~~i~~~~~~--g~~~~~~~~~~~~~~~i~~~~~g~l~~v~~~~~gl~~~~-~~g--~~~~~   85 (243)
                      .-.++++..+..+..+..++.+-.++.+  ....++..  +... +..|-|.++.+.++...+-+..|+ ...  ++.+.
T Consensus       375 dVRsl~vS~d~~~~~Sga~~SikiWn~~t~kciRTi~~--~y~l-~~~Fvpgd~~Iv~G~k~Gel~vfdlaS~~l~Eti~  451 (888)
T KOG0306|consen  375 DVRSLCVSSDSILLASGAGESIKIWNRDTLKCIRTITC--GYIL-ASKFVPGDRYIVLGTKNGELQVFDLASASLVETIR  451 (888)
T ss_pred             heeEEEeecCceeeeecCCCcEEEEEccCcceeEEecc--ccEE-EEEecCCCceEEEeccCCceEEEEeehhhhhhhhh
Confidence            3456667666655555456667777632  23333322  3444 445556666634443333366777 443  33322


Q ss_pred             eccCCCcccCCccEEEcCCCcEEEEeCCCCCCccccccccccc--CCCceEEEEeCCCCeeEEeeccccccceEEEcCCC
Q 026118           86 SQFNGSQLRFANDVIEASDGSLYFTVSSTKFTPAEYYLDLVSG--EPHGVLLKYDPSTNQTSLVLDGLYFANGVALSEDE  163 (243)
Q Consensus        86 ~~~~~~~~~~~~~l~~d~~G~l~v~~~~~~~~~~~~~~~~~~~--~~~g~v~~~~~~~~~~~~~~~~~~~~~gi~~~~dg  163 (243)
                      ..     ...+..|...||+.-+++.+... -...|+..+...  ....++..+-.+    +. .+-....-.+.+||||
T Consensus       452 AH-----dgaIWsi~~~pD~~g~vT~saDk-tVkfWdf~l~~~~~gt~~k~lsl~~~----rt-Lel~ddvL~v~~Spdg  520 (888)
T KOG0306|consen  452 AH-----DGAIWSISLSPDNKGFVTGSADK-TVKFWDFKLVVSVPGTQKKVLSLKHT----RT-LELEDDVLCVSVSPDG  520 (888)
T ss_pred             cc-----ccceeeeeecCCCCceEEecCCc-EEEEEeEEEEeccCcccceeeeeccc----eE-EeccccEEEEEEcCCC
Confidence            11     12455677888888777643210 000111000000  000111111110    00 0001223468899999


Q ss_pred             CEEEEEEcCCCeEEEEEeecCCCcceEEeccCCCCCCCceEECCCCCEEEEEecC
Q 026118          164 RFLVVCESWKFRCVKHFLKVSGRTDREIFIDNLPGGPDNVNLARDGSFWISIIKM  218 (243)
Q Consensus       164 ~~l~v~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~i~~d~~G~lwv~~~~~  218 (243)
                      ++|.|+ -.++.+..|-.+.-.+ -...+...+|  .-.|.+++|+++.+.....
T Consensus       521 k~LaVs-LLdnTVkVyflDtlKF-flsLYGHkLP--V~smDIS~DSklivTgSAD  571 (888)
T KOG0306|consen  521 KLLAVS-LLDNTVKVYFLDTLKF-FLSLYGHKLP--VLSMDISPDSKLIVTGSAD  571 (888)
T ss_pred             cEEEEE-eccCeEEEEEecceee-eeeecccccc--eeEEeccCCcCeEEeccCC
Confidence            977776 4678888887764211 0011111222  1235556677766654433

>PF06433 Me-amine-dh_H: Methylamine dehydrogenase heavy chain (MADH); InterPro: IPR009451 Methylamine dehydrogenase (1

Probab=90.55  E-value=8.9  Score=31.76  Aligned_cols=141  Identities=12%  Similarity=0.022  Sum_probs=70.4

Q ss_pred             CcEEEEe-----CCCcEEEEc-cCCceeEecccCCccccceEEccCCCEEEEEeCC-----Cc-----EEEEe-cCC-cE
Q 026118           21 GVLYTAT-----GDGWIKRMH-PNGTWEDWHQVGSQSLLGLTTTKENNVIIVCDSQ-----QG-----LLKVS-EEG-VT   82 (243)
Q Consensus        21 g~l~~~~-----~~~~i~~~~-~~g~~~~~~~~~~~~~~~i~~~~~g~l~~v~~~~-----~g-----l~~~~-~~g-~~   82 (243)
                      .++|+.+     -.++++.+| .++++.--... +. ...++++++|+.+|+++..     .|     |-.+| .+- .+
T Consensus         3 ~rvyV~D~~~~~~~~rv~viD~d~~k~lGmi~~-g~-~~~~~~spdgk~~y~a~T~~sR~~rG~RtDvv~~~D~~TL~~~   80 (342)
T PF06433_consen    3 HRVYVQDPVFFHMTSRVYVIDADSGKLLGMIDT-GF-LGNVALSPDGKTIYVAETFYSRGTRGERTDVVEIWDTQTLSPT   80 (342)
T ss_dssp             TEEEEEE-GGGGSSEEEEEEETTTTEEEEEEEE-ES-SEEEEE-TTSSEEEEEEEEEEETTEEEEEEEEEEEETTTTEEE
T ss_pred             cEEEEECCccccccceEEEEECCCCcEEEEeec-cc-CCceeECCCCCEEEEEEEEEeccccccceeEEEEEecCcCccc
Confidence            3677765     135788888 45554432221 11 2156788999987887631     12     45666 332 22


Q ss_pred             EEEeccCC---CcccCCccEEEcCCCc-EEEEeCCCCCCcccccccccccCCCceEEEEeCCCCeeEEeeccccccceEE
Q 026118           83 VLVSQFNG---SQLRFANDVIEASDGS-LYFTVSSTKFTPAEYYLDLVSGEPHGVLLKYDPSTNQTSLVLDGLYFANGVA  158 (243)
Q Consensus        83 ~~~~~~~~---~~~~~~~~l~~d~~G~-l~v~~~~~~~~~~~~~~~~~~~~~~g~v~~~~~~~~~~~~~~~~~~~~~gi~  158 (243)
                      .-...+.+   ......+-++.+.||+ +||.+..                +...|-.+|.+.+++..... ......+.
T Consensus        81 ~EI~iP~k~R~~~~~~~~~~~ls~dgk~~~V~N~T----------------Pa~SVtVVDl~~~kvv~ei~-~PGC~~iy  143 (342)
T PF06433_consen   81 GEIEIPPKPRAQVVPYKNMFALSADGKFLYVQNFT----------------PATSVTVVDLAAKKVVGEID-TPGCWLIY  143 (342)
T ss_dssp             EEEEETTS-B--BS--GGGEEE-TTSSEEEEEEES----------------SSEEEEEEETTTTEEEEEEE-GTSEEEEE
T ss_pred             ceEecCCcchheecccccceEEccCCcEEEEEccC----------------CCCeEEEEECCCCceeeeec-CCCEEEEE
Confidence            11122222   1123556678888886 6666432                33478889998776644321 11112222


Q ss_pred             EcCCCCEEEEEEcCCCeEEEEEee
Q 026118          159 LSEDERFLVVCESWKFRCVKHFLK  182 (243)
Q Consensus       159 ~~~dg~~l~v~~~~~~~i~~~~~~  182 (243)
                      -+...  -+.+-+.++++..+.++
T Consensus       144 P~~~~--~F~~lC~DGsl~~v~Ld  165 (342)
T PF06433_consen  144 PSGNR--GFSMLCGDGSLLTVTLD  165 (342)
T ss_dssp             EEETT--EEEEEETTSCEEEEEET
T ss_pred             ecCCC--ceEEEecCCceEEEEEC
Confidence            12222  23344556666666665

4.99.3 from EC) is a periplasmic quinoprotein found in several methyltrophic bacteria []. It is induced when grown on methylamine as a carbon source MADH and catalyses the oxidative deamination of amines to their corresponding aldehydes. The redox cofactor of this enzyme is tryptophan tryptophylquinone (TTQ). Electrons derived from the oxidation of methylamine are passed to an electron acceptor, which is usually the blue-copper protein amicyanin (IPR002386 from INTERPRO). RCH2NH2 + H2O + acceptor = RCHO + NH3 + reduced acceptor MADH is a hetero-tetramer, comprised of two heavy subunits and two light subunits. The heavy subunit forms a seven-bladed beta-propeller like structure [].; GO: 0030058 amine dehydrogenase activity, 0030416 methylamine metabolic process, 0055114 oxidation-reduction process, 0042597 periplasmic space; PDB: 3RN1_F 3SVW_F 3PXT_F 3L4O_F 3L4M_D 3SJL_F 3PXS_D 3ORV_F 3RMZ_F 3RLM_F ....

>KOG0264 consensus Nucleosome remodeling factor, subunit CAF1/NURF55/MSI1 [Chromatin structure and dynamics]

Probab=90.54  E-value=9.8  Score=32.21  Aligned_cols=151  Identities=11%  Similarity=-0.016  Sum_probs=79.8

Q ss_pred             cEEEcC--CCcEEEEeCCCcEEEEccC--Cc------eeEecccCCccccceEEccC-CCEEEEEeCCC-cEEEEe-cCC
Q 026118           14 DVSVDG--NGVLYTATGDGWIKRMHPN--GT------WEDWHQVGSQSLLGLTTTKE-NNVIIVCDSQQ-GLLKVS-EEG   80 (243)
Q Consensus        14 ~i~~d~--~g~l~~~~~~~~i~~~~~~--g~------~~~~~~~~~~~~~~i~~~~~-g~l~~v~~~~~-gl~~~~-~~g   80 (243)
                      +|++.+  .|+|..+..++.|..+|.+  +.      .+.+..........+++.+. ..+ |.+-... .|..+| +.+
T Consensus       182 glsWn~~~~g~Lls~~~d~~i~lwdi~~~~~~~~~~~p~~~~~~h~~~VeDV~~h~~h~~l-F~sv~dd~~L~iwD~R~~  260 (422)
T KOG0264|consen  182 GLSWNRQQEGTLLSGSDDHTICLWDINAESKEDKVVDPKTIFSGHEDVVEDVAWHPLHEDL-FGSVGDDGKLMIWDTRSN  260 (422)
T ss_pred             ccccccccceeEeeccCCCcEEEEeccccccCCccccceEEeecCCcceehhhccccchhh-heeecCCCeEEEEEcCCC
Confidence            344443  5667777788888888722  11      11111111111114455432 234 4433333 455666 432


Q ss_pred             cEEEEeccCCCcccCCccEEEcCCCcEEEEeCCCCCCcccccccccccCCCceEEEEeCCCCeeEE--eeccccccceEE
Q 026118           81 VTVLVSQFNGSQLRFANDVIEASDGSLYFTVSSTKFTPAEYYLDLVSGEPHGVLLKYDPSTNQTSL--VLDGLYFANGVA  158 (243)
Q Consensus        81 ~~~~~~~~~~~~~~~~~~l~~d~~G~l~v~~~~~~~~~~~~~~~~~~~~~~g~v~~~~~~~~~~~~--~~~~~~~~~gi~  158 (243)
                      ......... .....++++++.|-+...+++.+                ..+.|..+|+.+-....  +.........+.
T Consensus       261 ~~~~~~~~~-ah~~~vn~~~fnp~~~~ilAT~S----------------~D~tV~LwDlRnL~~~lh~~e~H~dev~~V~  323 (422)
T KOG0264|consen  261 TSKPSHSVK-AHSAEVNCVAFNPFNEFILATGS----------------ADKTVALWDLRNLNKPLHTFEGHEDEVFQVE  323 (422)
T ss_pred             CCCCccccc-ccCCceeEEEeCCCCCceEEecc----------------CCCcEEEeechhcccCceeccCCCcceEEEE
Confidence            000011011 11235678899985544444321                34678888886322211  122234457899


Q ss_pred             EcCCCCEEEEEEcCCCeEEEEEee
Q 026118          159 LSEDERFLVVCESWKFRCVKHFLK  182 (243)
Q Consensus       159 ~~~dg~~l~v~~~~~~~i~~~~~~  182 (243)
                      |+|....+..+...++++..+|++
T Consensus       324 WSPh~etvLASSg~D~rl~vWDls  347 (422)
T KOG0264|consen  324 WSPHNETVLASSGTDRRLNVWDLS  347 (422)
T ss_pred             eCCCCCceeEecccCCcEEEEecc
Confidence            999998898888888999999986

>KOG0268 consensus Sof1-like rRNA processing protein (contains WD40 repeats) [RNA processing and modification]

Probab=90.30  E-value=3.8  Score=33.90  Aligned_cols=51  Identities=10%  Similarity=0.015  Sum_probs=33.3

Q ss_pred             CCceEEEEeCCCCeeEEeeccccccceEEEcCCCCEEEEEEcCCCeEEEEEe
Q 026118          130 PHGVLLKYDPSTNQTSLVLDGLYFANGVALSEDERFLVVCESWKFRCVKHFL  181 (243)
Q Consensus       130 ~~g~v~~~~~~~~~~~~~~~~~~~~~gi~~~~dg~~l~v~~~~~~~i~~~~~  181 (243)
                      ...+|+.||...+.+..-..-...+|+|+|+|. .+.+++...+..+|-||.
T Consensus       208 sDrsIvLyD~R~~~Pl~KVi~~mRTN~IswnPe-afnF~~a~ED~nlY~~Dm  258 (433)
T KOG0268|consen  208 SDRSIVLYDLRQASPLKKVILTMRTNTICWNPE-AFNFVAANEDHNLYTYDM  258 (433)
T ss_pred             cCCceEEEecccCCccceeeeeccccceecCcc-ccceeeccccccceehhh
Confidence            446788899875543321222356899999994 457777666677776664

>KOG1036 consensus Mitotic spindle checkpoint protein BUB3, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning]

Probab=90.22  E-value=8.6  Score=31.08  Aligned_cols=145  Identities=11%  Similarity=0.004  Sum_probs=78.7

Q ss_pred             ccEEEcC-CCcEEEEeCCCcEEEEccCCceeEecccCCccccceEEccCCCEEEEEeCCCcEEEEe-cCC-cEEEEeccC
Q 026118           13 EDVSVDG-NGVLYTATGDGWIKRMHPNGTWEDWHQVGSQSLLGLTTTKENNVIIVCDSQQGLLKVS-EEG-VTVLVSQFN   89 (243)
Q Consensus        13 ~~i~~d~-~g~l~~~~~~~~i~~~~~~g~~~~~~~~~~~~~~~i~~~~~g~l~~v~~~~~gl~~~~-~~g-~~~~~~~~~   89 (243)
                      .+|-+++ .+.|.++.++|.+..++-.............|....+|..+-+. |+++.++-|.++| .++ ...+.... 
T Consensus        17 S~v~f~~~~~~LLvssWDgslrlYdv~~~~l~~~~~~~~plL~c~F~d~~~~-~~G~~dg~vr~~Dln~~~~~~igth~-   94 (323)
T KOG1036|consen   17 SSVKFSPSSSDLLVSSWDGSLRLYDVPANSLKLKFKHGAPLLDCAFADESTI-VTGGLDGQVRRYDLNTGNEDQIGTHD-   94 (323)
T ss_pred             eeEEEcCcCCcEEEEeccCcEEEEeccchhhhhheecCCceeeeeccCCceE-EEeccCceEEEEEecCCcceeeccCC-
Confidence            4577775 55788998999988887222111111112345447777666666 8888777788999 555 44444321 


Q ss_pred             CCcccCCccEEEcCCCcEEEEeCCCCCCcccccccccccCCCceEEEEeCCCCeeEEeeccccccceEEEcCCCCEEEEE
Q 026118           90 GSQLRFANDVIEASDGSLYFTVSSTKFTPAEYYLDLVSGEPHGVLLKYDPSTNQTSLVLDGLYFANGVALSEDERFLVVC  169 (243)
Q Consensus        90 ~~~~~~~~~l~~d~~G~l~v~~~~~~~~~~~~~~~~~~~~~~g~v~~~~~~~~~~~~~~~~~~~~~gi~~~~dg~~l~v~  169 (243)
                          ..+.+|...+.-...++.+                 ....|-.+|+......-..........+  +-.|+.|.|+
T Consensus        95 ----~~i~ci~~~~~~~~vIsgs-----------------WD~~ik~wD~R~~~~~~~~d~~kkVy~~--~v~g~~LvVg  151 (323)
T KOG1036|consen   95 ----EGIRCIEYSYEVGCVISGS-----------------WDKTIKFWDPRNKVVVGTFDQGKKVYCM--DVSGNRLVVG  151 (323)
T ss_pred             ----CceEEEEeeccCCeEEEcc-----------------cCccEEEEeccccccccccccCceEEEE--eccCCEEEEe
Confidence                2344565555434444432                 2345666777531111111111222223  3345557775


Q ss_pred             EcCCCeEEEEEeec
Q 026118          170 ESWKFRCVKHFLKV  183 (243)
Q Consensus       170 ~~~~~~i~~~~~~~  183 (243)
                      . .+..+..||+..
T Consensus       152 ~-~~r~v~iyDLRn  164 (323)
T KOG1036|consen  152 T-SDRKVLIYDLRN  164 (323)
T ss_pred             e-cCceEEEEEccc
Confidence            4 456788888753

>PHA02713 hypothetical protein; Provisional

Probab=90.14  E-value=13  Score=33.18  Aligned_cols=81  Identities=12%  Similarity=0.061  Sum_probs=42.8

Q ss_pred             ceEEEEeCCCCeeEEeecc--ccccceEEEcCCCCEEEEEEcCC------CeEEEEEeecCCCcceEEeccCCCC-CCCc
Q 026118          132 GVLLKYDPSTNQTSLVLDG--LYFANGVALSEDERFLVVCESWK------FRCVKHFLKVSGRTDREIFIDNLPG-GPDN  202 (243)
Q Consensus       132 g~v~~~~~~~~~~~~~~~~--~~~~~gi~~~~dg~~l~v~~~~~------~~i~~~~~~~~~~~~~~~~~~~~~~-~~~~  202 (243)
                      ..+.+|||.+.+++.+..-  .....+++. -+++ ||+....+      ..+.+||+..+  ..++...+-... .-.+
T Consensus       432 ~~ve~YDP~td~W~~v~~m~~~r~~~~~~~-~~~~-IYv~GG~~~~~~~~~~ve~Ydp~~~--~~W~~~~~m~~~r~~~~  507 (557)
T PHA02713        432 NKVIRYDTVNNIWETLPNFWTGTIRPGVVS-HKDD-IYVVCDIKDEKNVKTCIFRYNTNTY--NGWELITTTESRLSALH  507 (557)
T ss_pred             ceEEEECCCCCeEeecCCCCcccccCcEEE-ECCE-EEEEeCCCCCCccceeEEEecCCCC--CCeeEccccCcccccce
Confidence            4699999999888765421  112234443 3455 99875321      34678887641  123333321111 1223


Q ss_pred             eEECCCCCEEEEEec
Q 026118          203 VNLARDGSFWISIIK  217 (243)
Q Consensus       203 i~~d~~G~lwv~~~~  217 (243)
                      ++. -+|.||+....
T Consensus       508 ~~~-~~~~iyv~Gg~  521 (557)
T PHA02713        508 TIL-HDNTIMMLHCY  521 (557)
T ss_pred             eEE-ECCEEEEEeee
Confidence            333 37789986543

>KOG3881 consensus Uncharacterized conserved protein [Function unknown]

Probab=90.13  E-value=7.4  Score=32.50  Aligned_cols=109  Identities=11%  Similarity=-0.007  Sum_probs=62.9

Q ss_pred             ceEEccC--CCEEEEEeCCCcEEEEe-cCCcEEEEeccCCCcccCCccEEEcCCCc-EEEEeCCCCCCcccccccccccC
Q 026118           54 GLTTTKE--NNVIIVCDSQQGLLKVS-EEGVTVLVSQFNGSQLRFANDVIEASDGS-LYFTVSSTKFTPAEYYLDLVSGE  129 (243)
Q Consensus        54 ~i~~~~~--g~l~~v~~~~~gl~~~~-~~g~~~~~~~~~~~~~~~~~~l~~d~~G~-l~v~~~~~~~~~~~~~~~~~~~~  129 (243)
                      ++.|-+.  ...+..++..+.+..|| ..+.+++......  -+.+.++...|+|+ +|+++.                 
T Consensus       207 di~Fl~g~~~~~fat~T~~hqvR~YDt~~qRRPV~~fd~~--E~~is~~~l~p~gn~Iy~gn~-----------------  267 (412)
T KOG3881|consen  207 DIRFLEGSPNYKFATITRYHQVRLYDTRHQRRPVAQFDFL--ENPISSTGLTPSGNFIYTGNT-----------------  267 (412)
T ss_pred             cceecCCCCCceEEEEecceeEEEecCcccCcceeEeccc--cCcceeeeecCCCcEEEEecc-----------------
Confidence            4555432  33314444445577777 5555554431111  23455778889887 666653                 


Q ss_pred             CCceEEEEeCCCCeeEEe-e-ccccccceEEEcCCCCEEEEEEcCCCeEEEEEeec
Q 026118          130 PHGVLLKYDPSTNQTSLV-L-DGLYFANGVALSEDERFLVVCESWKFRCVKHFLKV  183 (243)
Q Consensus       130 ~~g~v~~~~~~~~~~~~~-~-~~~~~~~gi~~~~dg~~l~v~~~~~~~i~~~~~~~  183 (243)
                       .+.|..+|..++.+-.. . .-...+.+|..+|.+.+|-.+ .-+.-|..+|.+.
T Consensus       268 -~g~l~~FD~r~~kl~g~~~kg~tGsirsih~hp~~~~las~-GLDRyvRIhD~kt  321 (412)
T KOG3881|consen  268 -KGQLAKFDLRGGKLLGCGLKGITGSIRSIHCHPTHPVLASC-GLDRYVRIHDIKT  321 (412)
T ss_pred             -cchhheecccCceeeccccCCccCCcceEEEcCCCceEEee-ccceeEEEeeccc
Confidence             35788899886654432 2 223567889999988844433 3445566677654

>KOG0285 consensus Pleiotropic regulator 1 [RNA processing and modification]

Probab=90.09  E-value=9.9  Score=31.57  Aligned_cols=179  Identities=12%  Similarity=0.066  Sum_probs=94.1

Q ss_pred             cccCCcccEEEcCCC-cEEEEeCCCcEEEEccCCceeEec-ccCCccccceEEc-cCCCEEEEEeCCCcEEEEe-cCC--
Q 026118            7 GIVNHPEDVSVDGNG-VLYTATGDGWIKRMHPNGTWEDWH-QVGSQSLLGLTTT-KENNVIIVCDSQQGLLKVS-EEG--   80 (243)
Q Consensus         7 g~~~~p~~i~~d~~g-~l~~~~~~~~i~~~~~~g~~~~~~-~~~~~~~~~i~~~-~~g~l~~v~~~~~gl~~~~-~~g--   80 (243)
                      |.+..-.++..-|.- .|..+..+..+..+|-..+...+. .....+...+.+. .|+.+ +.+..+.-|..+| ..|  
T Consensus       233 GHlS~V~~L~lhPTldvl~t~grDst~RvWDiRtr~~V~~l~GH~~~V~~V~~~~~dpqv-it~S~D~tvrlWDl~agkt  311 (460)
T KOG0285|consen  233 GHLSGVYCLDLHPTLDVLVTGGRDSTIRVWDIRTRASVHVLSGHTNPVASVMCQPTDPQV-ITGSHDSTVRLWDLRAGKT  311 (460)
T ss_pred             cccceeEEEeccccceeEEecCCcceEEEeeecccceEEEecCCCCcceeEEeecCCCce-EEecCCceEEEeeeccCce
Confidence            444555556666533 455555666677777322222221 1122343244443 35666 7877766777888 666  


Q ss_pred             cEEEEeccCCCcccCCccEEEcCCCcEEEEeCCCCCCcccccccccccCCCceEEEEeCCCCeeEE-eeccccccceEEE
Q 026118           81 VTVLVSQFNGSQLRFANDVIEASDGSLYFTVSSTKFTPAEYYLDLVSGEPHGVLLKYDPSTNQTSL-VLDGLYFANGVAL  159 (243)
Q Consensus        81 ~~~~~~~~~~~~~~~~~~l~~d~~G~l~v~~~~~~~~~~~~~~~~~~~~~~g~v~~~~~~~~~~~~-~~~~~~~~~gi~~  159 (243)
                      +..+...     ...+.+++..|.-.+|.+.+.                  ..+-+.+...|++.. +.......+.++.
T Consensus       312 ~~tlt~h-----kksvral~lhP~e~~fASas~------------------dnik~w~~p~g~f~~nlsgh~~iintl~~  368 (460)
T KOG0285|consen  312 MITLTHH-----KKSVRALCLHPKENLFASASP------------------DNIKQWKLPEGEFLQNLSGHNAIINTLSV  368 (460)
T ss_pred             eEeeecc-----cceeeEEecCCchhhhhccCC------------------ccceeccCCccchhhccccccceeeeeee
Confidence            2222211     234567788887777776332                  123333333233322 1222345677888


Q ss_pred             cCCCCEEEEEEcCCCeEEEEEeec-CCCcceEEeccCCCCC------CCceEECCCCCEEE
Q 026118          160 SEDERFLVVCESWKFRCVKHFLKV-SGRTDREIFIDNLPGG------PDNVNLARDGSFWI  213 (243)
Q Consensus       160 ~~dg~~l~v~~~~~~~i~~~~~~~-~~~~~~~~~~~~~~~~------~~~i~~d~~G~lwv  213 (243)
                      ..||  ++++...++.++.+|... ..+...+...  .+|.      ....++|..|.-.|
T Consensus       369 nsD~--v~~~G~dng~~~fwdwksg~nyQ~~~t~v--qpGSl~sEagI~as~fDktg~rli  425 (460)
T KOG0285|consen  369 NSDG--VLVSGGDNGSIMFWDWKSGHNYQRGQTIV--QPGSLESEAGIFASCFDKTGSRLI  425 (460)
T ss_pred             ccCc--eEEEcCCceEEEEEecCcCcccccccccc--cCCccccccceeEEeecccCceEE
Confidence            7777  677767788899988763 3333332222  2221      23366777776444

>KOG0265 consensus U5 snRNP-specific protein-like factor and related proteins [RNA processing and modification]

Probab=90.02  E-value=9  Score=30.97  Aligned_cols=113  Identities=12%  Similarity=0.076  Sum_probs=69.3

Q ss_pred             ccccceEEccCCCEEEEEeCCCcEEEEecCC-cEEEEeccCCCcccCCccEEEcCCCcEEEEeCCCCCCccccccccccc
Q 026118           50 QSLLGLTTTKENNVIIVCDSQQGLLKVSEEG-VTVLVSQFNGSQLRFANDVIEASDGSLYFTVSSTKFTPAEYYLDLVSG  128 (243)
Q Consensus        50 ~~~~~i~~~~~g~l~~v~~~~~gl~~~~~~g-~~~~~~~~~~~~~~~~~~l~~d~~G~l~v~~~~~~~~~~~~~~~~~~~  128 (243)
                      ..+ .+.|+|+|..+..+..+..|+.++..| .+-+.. ..+ ....+.++...+|++..++.+.               
T Consensus        49 eI~-~~~F~P~gs~~aSgG~Dr~I~LWnv~gdceN~~~-lkg-HsgAVM~l~~~~d~s~i~S~gt---------------  110 (338)
T KOG0265|consen   49 EIY-TIKFHPDGSCFASGGSDRAIVLWNVYGDCENFWV-LKG-HSGAVMELHGMRDGSHILSCGT---------------  110 (338)
T ss_pred             eEE-EEEECCCCCeEeecCCcceEEEEeccccccceee-ecc-ccceeEeeeeccCCCEEEEecC---------------
Confidence            345 688999999833333445677777333 332221 111 1234567777789987776432               


Q ss_pred             CCCceEEEEeCCCCeeEE-eeccccccceEEEcCCCCEEEEEEcCCCeEEEEEee
Q 026118          129 EPHGVLLKYDPSTNQTSL-VLDGLYFANGVALSEDERFLVVCESWKFRCVKHFLK  182 (243)
Q Consensus       129 ~~~g~v~~~~~~~~~~~~-~~~~~~~~~gi~~~~dg~~l~v~~~~~~~i~~~~~~  182 (243)
                        .-.|+.+|..+|+..+ ........|.+....-|-.|..+...++++..+|..
T Consensus       111 --Dk~v~~wD~~tG~~~rk~k~h~~~vNs~~p~rrg~~lv~SgsdD~t~kl~D~R  163 (338)
T KOG0265|consen  111 --DKTVRGWDAETGKRIRKHKGHTSFVNSLDPSRRGPQLVCSGSDDGTLKLWDIR  163 (338)
T ss_pred             --CceEEEEecccceeeehhccccceeeecCccccCCeEEEecCCCceEEEEeec
Confidence              2478889998886544 333345556666555666677777777788888875

>KOG0316 consensus Conserved WD40 repeat-containing protein [Function unknown]

Probab=89.51  E-value=8.6  Score=30.07  Aligned_cols=173  Identities=14%  Similarity=0.178  Sum_probs=93.1

Q ss_pred             EEEcCCCcEEEEe-CCCcEEEEcc-CCc-eeEecccCCccccceEEccCCCEEEEEeCCCcEEEEe-cCC--cEEEEecc
Q 026118           15 VSVDGNGVLYTAT-GDGWIKRMHP-NGT-WEDWHQVGSQSLLGLTTTKENNVIIVCDSQQGLLKVS-EEG--VTVLVSQF   88 (243)
Q Consensus        15 i~~d~~g~l~~~~-~~~~i~~~~~-~g~-~~~~~~~~~~~~~~i~~~~~g~l~~v~~~~~gl~~~~-~~g--~~~~~~~~   88 (243)
                      +-+..+|+.-++. .+..|..++| .|. ++.+.-.+.... .++...|..-+-.+..+..+..+| .+|  .+.+... 
T Consensus        23 vryN~dGnY~ltcGsdrtvrLWNp~rg~liktYsghG~EVl-D~~~s~Dnskf~s~GgDk~v~vwDV~TGkv~Rr~rgH-  100 (307)
T KOG0316|consen   23 VRYNVDGNYCLTCGSDRTVRLWNPLRGALIKTYSGHGHEVL-DAALSSDNSKFASCGGDKAVQVWDVNTGKVDRRFRGH-  100 (307)
T ss_pred             EEEccCCCEEEEcCCCceEEeecccccceeeeecCCCceee-eccccccccccccCCCCceEEEEEcccCeeeeecccc-
Confidence            4445577644444 4555666774 344 333433223334 555555554414444445688888 777  3333221 


Q ss_pred             CCCcccCCccEEEcCCCcEEEEeCCCCCCcccccccccccCCCceEEEEeCCCCeeEEee---ccccccceEEEcCCCCE
Q 026118           89 NGSQLRFANDVIEASDGSLYFTVSSTKFTPAEYYLDLVSGEPHGVLLKYDPSTNQTSLVL---DGLYFANGVALSEDERF  165 (243)
Q Consensus        89 ~~~~~~~~~~l~~d~~G~l~v~~~~~~~~~~~~~~~~~~~~~~g~v~~~~~~~~~~~~~~---~~~~~~~gi~~~~dg~~  165 (243)
                          ...+|.+.+..+..+.++.+-                 ...+-.+|=.+..+++++   +......++.+  .+. 
T Consensus       101 ----~aqVNtV~fNeesSVv~Sgsf-----------------D~s~r~wDCRS~s~ePiQildea~D~V~Si~v--~~h-  156 (307)
T KOG0316|consen  101 ----LAQVNTVRFNEESSVVASGSF-----------------DSSVRLWDCRSRSFEPIQILDEAKDGVSSIDV--AEH-  156 (307)
T ss_pred             ----cceeeEEEecCcceEEEeccc-----------------cceeEEEEcccCCCCccchhhhhcCceeEEEe--ccc-
Confidence                235677788877777776321                 123444444444444432   22334444544  344 


Q ss_pred             EEEEEcCCCeEEEEEeecCCCcceEEeccCCCCCC-CceEECCCCCE-EEEEecCC
Q 026118          166 LVVCESWKFRCVKHFLKVSGRTDREIFIDNLPGGP-DNVNLARDGSF-WISIIKMD  219 (243)
Q Consensus       166 l~v~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~-~~i~~d~~G~l-wv~~~~~~  219 (243)
                      ..++...++.+..||+..+.+..      ..-+.| ..+.+.++|+. .++.....
T Consensus       157 eIvaGS~DGtvRtydiR~G~l~s------Dy~g~pit~vs~s~d~nc~La~~l~st  206 (307)
T KOG0316|consen  157 EIVAGSVDGTVRTYDIRKGTLSS------DYFGHPITSVSFSKDGNCSLASSLDST  206 (307)
T ss_pred             EEEeeccCCcEEEEEeecceeeh------hhcCCcceeEEecCCCCEEEEeeccce
Confidence            66777788999999987543211      122233 55889999995 44444433

>PF00930 DPPIV_N: Dipeptidyl peptidase IV (DPP IV) N-terminal region; InterPro: IPR002469 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families

Probab=89.39  E-value=4.1  Score=33.98  Aligned_cols=25  Identities=16%  Similarity=0.027  Sum_probs=15.7

Q ss_pred             cccceEEEcCCCCEEEEEEcCCCeE
Q 026118          152 YFANGVALSEDERFLVVCESWKFRC  176 (243)
Q Consensus       152 ~~~~gi~~~~dg~~l~v~~~~~~~i  176 (243)
                      ....++.++||+++|.+.......|
T Consensus       101 ~~~~~~~WSpd~~~la~~~~d~~~v  125 (353)
T PF00930_consen  101 DRRSAVWWSPDSKYLAFLRFDEREV  125 (353)
T ss_dssp             SSSBSEEE-TTSSEEEEEEEE-TTS
T ss_pred             ccccceEECCCCCEEEEEEECCcCC
Confidence            3457899999999887664443333

Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This domain defines serine peptidases belonging to MEROPS peptidase family S9 (clan SC), subfamily S9B (dipeptidyl-peptidase IV). The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. This domain is an alignment of the region to the N-terminal side of the active site, which is found in IPR001375 from INTERPRO. CD26 (3.4.14.5 from EC) is also called adenosine deaminase-binding protein (ADA-binding protein) or dipeptidylpeptidase IV (DPP IV ectoenzyme). The exopeptidase cleaves off N-terminal X-Pro or X-Ala dipeptides from polypeptides (dipeptidyl peptidase IV activity). CD26 serves as the costimulatory molecule in T cell activation and is an associated marker of autoimmune diseases, adenosine deaminase-deficiency and HIV pathogenesis. Dipeptidyl peptidase IV (DPP IV) is responsible for the removal of N-terminal dipeptides sequentially from polypeptides having unsubstituted N termini, provided that the penultimate residue is proline. The enzyme catalyses the reaction: Dipeptidyl-Polypeptide + H(2)O = Dipeptide + Polypeptide It is a type II membrane protein that forms a homodimer. CD molecules are leucocyte antigens on cell surfaces. CD antigens nomenclature is updated at Protein Reviews On The Web (http://prow.nci.nih.gov/). ; GO: 0006508 proteolysis, 0016020 membrane; PDB: 2RIP_A 3Q8W_B 2AJL_I 1TKR_B 1TK3_B 3C45_A 2G5P_A 3G0C_D 1R9M_C 1RWQ_A ....

>KOG0301 consensus Phospholipase A2-activating protein (contains WD40 repeats) [Lipid transport and metabolism]

Probab=89.18  E-value=16  Score=32.96  Aligned_cols=141  Identities=13%  Similarity=0.120  Sum_probs=66.2

Q ss_pred             EEEcCCCcEEEEeCCCcEEEEccCCceeEecccCCccccceEEccCCCEEEEEeCCCcEEEEecCC--cEEEEeccCCCc
Q 026118           15 VSVDGNGVLYTATGDGWIKRMHPNGTWEDWHQVGSQSLLGLTTTKENNVIIVCDSQQGLLKVSEEG--VTVLVSQFNGSQ   92 (243)
Q Consensus        15 i~~d~~g~l~~~~~~~~i~~~~~~g~~~~~~~~~~~~~~~i~~~~~g~l~~v~~~~~gl~~~~~~g--~~~~~~~~~~~~   92 (243)
                      ++.-+++.+..+..+..|..+..+...+.+.- ......++++-+++.+ ..+..++-|..++-+|  ...+..     .
T Consensus       146 v~~l~e~~~vTgsaDKtIklWk~~~~l~tf~g-HtD~VRgL~vl~~~~f-lScsNDg~Ir~w~~~ge~l~~~~g-----h  218 (745)
T KOG0301|consen  146 VASLPENTYVTGSADKTIKLWKGGTLLKTFSG-HTDCVRGLAVLDDSHF-LSCSNDGSIRLWDLDGEVLLEMHG-----H  218 (745)
T ss_pred             eeecCCCcEEeccCcceeeeccCCchhhhhcc-chhheeeeEEecCCCe-EeecCCceEEEEeccCceeeeeec-----c
Confidence            33334443333345555555543222333321 1222337888777777 5665433344445545  333221     1


Q ss_pred             ccCCccEEEcCCCcEEEEeCCCCCCcccccccccccCCCceEEEEeCCCCeeEEeeccccccceEEEcCCCCEEEEEEcC
Q 026118           93 LRFANDVIEASDGSLYFTVSSTKFTPAEYYLDLVSGEPHGVLLKYDPSTNQTSLVLDGLYFANGVALSEDERFLVVCESW  172 (243)
Q Consensus        93 ~~~~~~l~~d~~G~l~v~~~~~~~~~~~~~~~~~~~~~~g~v~~~~~~~~~~~~~~~~~~~~~gi~~~~dg~~l~v~~~~  172 (243)
                      .++++++....++.+.+++..               ...-++|..+. ..+...++...-+  ...+-.+|+ ++++. .
T Consensus       219 tn~vYsis~~~~~~~Ivs~gE---------------DrtlriW~~~e-~~q~I~lPttsiW--sa~~L~NgD-Ivvg~-S  278 (745)
T KOG0301|consen  219 TNFVYSISMALSDGLIVSTGE---------------DRTLRIWKKDE-CVQVITLPTTSIW--SAKVLLNGD-IVVGG-S  278 (745)
T ss_pred             ceEEEEEEecCCCCeEEEecC---------------CceEEEeecCc-eEEEEecCccceE--EEEEeeCCC-EEEec-c
Confidence            246667775666677877543               12234555441 1111111111111  122224677 77774 4


Q ss_pred             CCeEEEEEee
Q 026118          173 KFRCVKHFLK  182 (243)
Q Consensus       173 ~~~i~~~~~~  182 (243)
                      ++.|+.|..+
T Consensus       279 DG~VrVfT~~  288 (745)
T KOG0301|consen  279 DGRVRVFTVD  288 (745)
T ss_pred             CceEEEEEec
Confidence            6778888765

>KOG2394 consensus WD40 protein DMR-N9 [General function prediction only]

Probab=88.49  E-value=2.4  Score=36.87  Aligned_cols=55  Identities=13%  Similarity=0.126  Sum_probs=32.7

Q ss_pred             ccccceEEccCCCEEEEEeCCCc-EEEEe-cCC-cEEEEeccCCCcccCCccEEEcCCCcEEEE
Q 026118           50 QSLLGLTTTKENNVIIVCDSQQG-LLKVS-EEG-VTVLVSQFNGSQLRFANDVIEASDGSLYFT  110 (243)
Q Consensus        50 ~~~~~i~~~~~g~l~~v~~~~~g-l~~~~-~~g-~~~~~~~~~~~~~~~~~~l~~d~~G~l~v~  110 (243)
                      .++ .++|++||+.|..+. .+| |..|+ .+. ..-+...+    ....-+++.+|||++.++
T Consensus       292 ~in-~f~FS~DG~~LA~VS-qDGfLRvF~fdt~eLlg~mkSY----FGGLLCvcWSPDGKyIvt  349 (636)
T KOG2394|consen  292 SIN-EFAFSPDGKYLATVS-QDGFLRIFDFDTQELLGVMKSY----FGGLLCVCWSPDGKYIVT  349 (636)
T ss_pred             ccc-ceeEcCCCceEEEEe-cCceEEEeeccHHHHHHHHHhh----ccceEEEEEcCCccEEEe
Confidence            345 789999999844444 345 33444 332 11111122    234558899999998887

>KOG1445 consensus Tumor-specific antigen (contains WD repeats) [Cytoskeleton]

Probab=88.34  E-value=7.6  Score=34.77  Aligned_cols=139  Identities=21%  Similarity=0.179  Sum_probs=72.9

Q ss_pred             CCcEEEEeCCCcEEEEc--cCCceeE------ecc-cCCccccceEEccC-CCEEEEEeCCCcEEEEe-cCC--cEEEEe
Q 026118           20 NGVLYTATGDGWIKRMH--PNGTWED------WHQ-VGSQSLLGLTTTKE-NNVIIVCDSQQGLLKVS-EEG--VTVLVS   86 (243)
Q Consensus        20 ~g~l~~~~~~~~i~~~~--~~g~~~~------~~~-~~~~~~~~i~~~~~-g~l~~v~~~~~gl~~~~-~~g--~~~~~~   86 (243)
                      +.+|-++.+++.|..+.  .+|-...      ... ...... .|.|.|- -++|.++.++.-|-.+| .++  ...+..
T Consensus       640 ~~rLAVa~ddg~i~lWr~~a~gl~e~~~tPe~~lt~h~eKI~-slRfHPLAadvLa~asyd~Ti~lWDl~~~~~~~~l~g  718 (1012)
T KOG1445|consen  640 DERLAVATDDGQINLWRLTANGLPENEMTPEKILTIHGEKIT-SLRFHPLAADVLAVASYDSTIELWDLANAKLYSRLVG  718 (1012)
T ss_pred             hHHeeecccCceEEEEEeccCCCCcccCCcceeeecccceEE-EEEecchhhhHhhhhhccceeeeeehhhhhhhheecc
Confidence            34666777667664443  3331111      111 112223 5555542 22334554444455666 444  222221


Q ss_pred             ccCCCcccCCccEEEcCCCcEEEEeCCCCCCcccccccccccCCCceEEEEeCCCCeeEEeeccc----cccceEEEcCC
Q 026118           87 QFNGSQLRFANDVIEASDGSLYFTVSSTKFTPAEYYLDLVSGEPHGVLLKYDPSTNQTSLVLDGL----YFANGVALSED  162 (243)
Q Consensus        87 ~~~~~~~~~~~~l~~d~~G~l~v~~~~~~~~~~~~~~~~~~~~~~g~v~~~~~~~~~~~~~~~~~----~~~~gi~~~~d  162 (243)
                      .     ...+.+++.+|+|+...+.-                 ..|.|..|+|..++ +++.++.    .....|.|.=|
T Consensus       719 H-----tdqIf~~AWSpdGr~~AtVc-----------------KDg~~rVy~Prs~e-~pv~Eg~gpvgtRgARi~wacd  775 (1012)
T KOG1445|consen  719 H-----TDQIFGIAWSPDGRRIATVC-----------------KDGTLRVYEPRSRE-QPVYEGKGPVGTRGARILWACD  775 (1012)
T ss_pred             C-----cCceeEEEECCCCcceeeee-----------------cCceEEEeCCCCCC-CccccCCCCccCcceeEEEEec
Confidence            1     23577999999999777631                 35788899998554 3333321    12234777778


Q ss_pred             CCEEEEEEcCC---CeEEEEEee
Q 026118          163 ERFLVVCESWK---FRCVKHFLK  182 (243)
Q Consensus       163 g~~l~v~~~~~---~~i~~~~~~  182 (243)
                      |+++.++....   .+|..|+.+
T Consensus       776 gr~viv~Gfdk~SeRQv~~Y~Aq  798 (1012)
T KOG1445|consen  776 GRIVIVVGFDKSSERQVQMYDAQ  798 (1012)
T ss_pred             CcEEEEecccccchhhhhhhhhh
Confidence            88777775432   345556544

>KOG2321 consensus WD40 repeat protein [General function prediction only]

Probab=88.24  E-value=18  Score=32.08  Aligned_cols=115  Identities=19%  Similarity=0.280  Sum_probs=62.9

Q ss_pred             cEEEc-CCCcEEEEeCCCcEEEEc-cCCceeEecccCCccccceEEccCCCEEEEEeCCCcEE-EEe-cCC--cEEEE--
Q 026118           14 DVSVD-GNGVLYTATGDGWIKRMH-PNGTWEDWHQVGSQSLLGLTTTKENNVIIVCDSQQGLL-KVS-EEG--VTVLV--   85 (243)
Q Consensus        14 ~i~~d-~~g~l~~~~~~~~i~~~~-~~g~~~~~~~~~~~~~~~i~~~~~g~l~~v~~~~~gl~-~~~-~~g--~~~~~--   85 (243)
                      .|+.+ +.=.||++.....|||++ ..|++..-.......++.+.+++-..| +++....|.+ .+| .+.  +..+.  
T Consensus       138 Dm~y~~~scDly~~gsg~evYRlNLEqGrfL~P~~~~~~~lN~v~in~~hgL-la~Gt~~g~VEfwDpR~ksrv~~l~~~  216 (703)
T KOG2321|consen  138 DMKYHKPSCDLYLVGSGSEVYRLNLEQGRFLNPFETDSGELNVVSINEEHGL-LACGTEDGVVEFWDPRDKSRVGTLDAA  216 (703)
T ss_pred             cccccCCCccEEEeecCcceEEEEccccccccccccccccceeeeecCccce-EEecccCceEEEecchhhhhheeeecc
Confidence            36666 355788887777899999 567654322222222226667665556 4554445544 555 332  32221  


Q ss_pred             ec----cCCCcccCCccEEEcCCC-cEEEEeCCCCCCcccccccccccCCCceEEEEeCCCCeeEEe
Q 026118           86 SQ----FNGSQLRFANDVIEASDG-SLYFTVSSTKFTPAEYYLDLVSGEPHGVLLKYDPSTNQTSLV  147 (243)
Q Consensus        86 ~~----~~~~~~~~~~~l~~d~~G-~l~v~~~~~~~~~~~~~~~~~~~~~~g~v~~~~~~~~~~~~~  147 (243)
                      ..    +.......+..+.++.+| ++-+++                  ..|.+|.||..+.+...+
T Consensus       217 ~~v~s~pg~~~~~svTal~F~d~gL~~aVGt------------------s~G~v~iyDLRa~~pl~~  265 (703)
T KOG2321|consen  217 SSVNSHPGGDAAPSVTALKFRDDGLHVAVGT------------------STGSVLIYDLRASKPLLV  265 (703)
T ss_pred             cccCCCccccccCcceEEEecCCceeEEeec------------------cCCcEEEEEcccCCceee
Confidence            11    111123345566776666 344443                  457899999986554443

>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]

Probab=88.20  E-value=20  Score=32.54  Aligned_cols=56  Identities=14%  Similarity=0.187  Sum_probs=35.8

Q ss_pred             CcccEEEcCCCc-EEEEeCCCcEEEEcc-CCce-eEecccCCccccceEEccCCCEEEEEeC
Q 026118           11 HPEDVSVDGNGV-LYTATGDGWIKRMHP-NGTW-EDWHQVGSQSLLGLTTTKENNVIIVCDS   69 (243)
Q Consensus        11 ~p~~i~~d~~g~-l~~~~~~~~i~~~~~-~g~~-~~~~~~~~~~~~~i~~~~~g~l~~v~~~   69 (243)
                      .-..+++-|||. |.++ .+.+++.+|+ +|.. .+......... .++.+.||++ |....
T Consensus        14 ci~d~afkPDGsqL~lA-Ag~rlliyD~ndG~llqtLKgHKDtVy-cVAys~dGkr-FASG~   72 (1081)
T KOG1538|consen   14 CINDIAFKPDGTQLILA-AGSRLLVYDTSDGTLLQPLKGHKDTVY-CVAYAKDGKR-FASGS   72 (1081)
T ss_pred             chheeEECCCCceEEEe-cCCEEEEEeCCCcccccccccccceEE-EEEEccCCce-eccCC
Confidence            445688999995 5555 5568999994 5543 33222222345 7899999998 66543

>PF06433 Me-amine-dh_H: Methylamine dehydrogenase heavy chain (MADH); InterPro: IPR009451 Methylamine dehydrogenase (1

Probab=88.12  E-value=14  Score=30.66  Aligned_cols=167  Identities=11%  Similarity=0.068  Sum_probs=85.7

Q ss_pred             cCCcccEEEcC--CCcEEEEeCCCcEEEE--ccCCceeEecc----cCCcccc-ceEEc-cCCCEEEEEeCCCcEEEEe-
Q 026118            9 VNHPEDVSVDG--NGVLYTATGDGWIKRM--HPNGTWEDWHQ----VGSQSLL-GLTTT-KENNVIIVCDSQQGLLKVS-   77 (243)
Q Consensus         9 ~~~p~~i~~d~--~g~l~~~~~~~~i~~~--~~~g~~~~~~~----~~~~~~~-~i~~~-~~g~l~~v~~~~~gl~~~~-   77 (243)
                      +.-|.|..+-|  +...+.-..+|.+..+  +.+|+......    ....|.. .-++. ..+++ |+.++.+.|+.++ 
T Consensus       134 i~~PGC~~iyP~~~~~F~~lC~DGsl~~v~Ld~~Gk~~~~~t~~F~~~~dp~f~~~~~~~~~~~~-~F~Sy~G~v~~~dl  212 (342)
T PF06433_consen  134 IDTPGCWLIYPSGNRGFSMLCGDGSLLTVTLDADGKEAQKSTKVFDPDDDPLFEHPAYSRDGGRL-YFVSYEGNVYSADL  212 (342)
T ss_dssp             EEGTSEEEEEEEETTEEEEEETTSCEEEEEETSTSSEEEEEEEESSTTTS-B-S--EEETTTTEE-EEEBTTSEEEEEEE
T ss_pred             ecCCCEEEEEecCCCceEEEecCCceEEEEECCCCCEeEeeccccCCCCcccccccceECCCCeE-EEEecCCEEEEEec
Confidence            44566654443  3455555578887554  46776543221    1112211 12233 33456 6667767788888 


Q ss_pred             cCC-cEEEEec--cC------CCcccCCccEEEcC-CCcEEEEeCCCCCCcccccccccccCCCceEEEEeCCCCeeEEe
Q 026118           78 EEG-VTVLVSQ--FN------GSQLRFANDVIEAS-DGSLYFTVSSTKFTPAEYYLDLVSGEPHGVLLKYDPSTNQTSLV  147 (243)
Q Consensus        78 ~~g-~~~~~~~--~~------~~~~~~~~~l~~d~-~G~l~v~~~~~~~~~~~~~~~~~~~~~~g~v~~~~~~~~~~~~~  147 (243)
                      ... .+.....  ..      +=....-+-+++++ .++||+-...+  ....+      ......||.||+++++...-
T Consensus       213 sg~~~~~~~~~~~~t~~e~~~~WrPGG~Q~~A~~~~~~rlyvLMh~g--~~gsH------KdpgteVWv~D~~t~krv~R  284 (342)
T PF06433_consen  213 SGDSAKFGKPWSLLTDAEKADGWRPGGWQLIAYHAASGRLYVLMHQG--GEGSH------KDPGTEVWVYDLKTHKRVAR  284 (342)
T ss_dssp             TTSSEEEEEEEESS-HHHHHTTEEE-SSS-EEEETTTTEEEEEEEE----TT-T------TS-EEEEEEEETTTTEEEEE
T ss_pred             cCCcccccCcccccCccccccCcCCcceeeeeeccccCeEEEEecCC--CCCCc------cCCceEEEEEECCCCeEEEE
Confidence            333 3322210  00      00112334477775 57888864211  11000      11234699999998764432


Q ss_pred             eccccccceEEEcCCCC-EEEEEEcCCCeEEEEEeecC
Q 026118          148 LDGLYFANGVALSEDER-FLVVCESWKFRCVKHFLKVS  184 (243)
Q Consensus       148 ~~~~~~~~gi~~~~dg~-~l~v~~~~~~~i~~~~~~~~  184 (243)
                      ++-.....+|+++.|.+ .||..+..++.|..||..++
T Consensus       285 i~l~~~~~Si~Vsqd~~P~L~~~~~~~~~l~v~D~~tG  322 (342)
T PF06433_consen  285 IPLEHPIDSIAVSQDDKPLLYALSAGDGTLDVYDAATG  322 (342)
T ss_dssp             EEEEEEESEEEEESSSS-EEEEEETTTTEEEEEETTT-
T ss_pred             EeCCCccceEEEccCCCcEEEEEcCCCCeEEEEeCcCC
Confidence            22122345899998887 56666666788999997653

4.99.3 from EC) is a periplasmic quinoprotein found in several methyltrophic bacteria []. It is induced when grown on methylamine as a carbon source MADH and catalyses the oxidative deamination of amines to their corresponding aldehydes. The redox cofactor of this enzyme is tryptophan tryptophylquinone (TTQ). Electrons derived from the oxidation of methylamine are passed to an electron acceptor, which is usually the blue-copper protein amicyanin (IPR002386 from INTERPRO). RCH2NH2 + H2O + acceptor = RCHO + NH3 + reduced acceptor MADH is a hetero-tetramer, comprised of two heavy subunits and two light subunits. The heavy subunit forms a seven-bladed beta-propeller like structure [].; GO: 0030058 amine dehydrogenase activity, 0030416 methylamine metabolic process, 0055114 oxidation-reduction process, 0042597 periplasmic space; PDB: 3RN1_F 3SVW_F 3PXT_F 3L4O_F 3L4M_D 3SJL_F 3PXS_D 3ORV_F 3RMZ_F 3RLM_F ....

>KOG2110 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]

Probab=87.96  E-value=14  Score=30.66  Aligned_cols=86  Identities=15%  Similarity=0.123  Sum_probs=48.5

Q ss_pred             CCCceEEEEeCCCCeeEEeecc-ccccceEEEcCCCCEEEEEEcCCCeEEE-EEeecCCCcceEEeccC-CCCCCCceEE
Q 026118          129 EPHGVLLKYDPSTNQTSLVLDG-LYFANGVALSEDERFLVVCESWKFRCVK-HFLKVSGRTDREIFIDN-LPGGPDNVNL  205 (243)
Q Consensus       129 ~~~g~v~~~~~~~~~~~~~~~~-~~~~~gi~~~~dg~~l~v~~~~~~~i~~-~~~~~~~~~~~~~~~~~-~~~~~~~i~~  205 (243)
                      ...|.|+.+|..+-+....... ......|+|+++|+ +..+-...+.|.| |....+  .....|-.+ .+.....|++
T Consensus       150 ~t~GdV~l~d~~nl~~v~~I~aH~~~lAalafs~~G~-llATASeKGTVIRVf~v~~G--~kl~eFRRG~~~~~IySL~F  226 (391)
T KOG2110|consen  150 TTSGDVVLFDTINLQPVNTINAHKGPLAALAFSPDGT-LLATASEKGTVIRVFSVPEG--QKLYEFRRGTYPVSIYSLSF  226 (391)
T ss_pred             CCCceEEEEEcccceeeeEEEecCCceeEEEECCCCC-EEEEeccCceEEEEEEcCCc--cEeeeeeCCceeeEEEEEEE
Confidence            3467899999875443333322 23346799999999 5555456677665 444321  111122111 1223455889


Q ss_pred             CCCCCEEEEEec
Q 026118          206 ARDGSFWISIIK  217 (243)
Q Consensus       206 d~~G~lwv~~~~  217 (243)
                      ++++.+..++.+
T Consensus       227 s~ds~~L~~sS~  238 (391)
T KOG2110|consen  227 SPDSQFLAASSN  238 (391)
T ss_pred             CCCCCeEEEecC
Confidence            999886665543

>PF08553 VID27: VID27 cytoplasmic protein; InterPro: IPR013863 This entry represents fungal and plant proteins and contains many hypothetical proteins

Probab=87.70  E-value=1.8  Score=39.91  Aligned_cols=65  Identities=14%  Similarity=0.163  Sum_probs=48.6

Q ss_pred             cccEEEcCCCcEEEEeCCCcEEEEccCCc-eeEecccCCccccceEEccCCCEEEEEeCCCcEEEEe
Q 026118           12 PEDVSVDGNGVLYTATGDGWIKRMHPNGT-WEDWHQVGSQSLLGLTTTKENNVIIVCDSQQGLLKVS   77 (243)
Q Consensus        12 p~~i~~d~~g~l~~~~~~~~i~~~~~~g~-~~~~~~~~~~~~~~i~~~~~g~l~~v~~~~~gl~~~~   77 (243)
                      =.+++.+.+|.|-+|+.+|.|..++..|+ .++.....+.|..+|.+..||++ .+++...-|+.++
T Consensus       580 Fs~~aTt~~G~iavgs~~G~IRLyd~~g~~AKT~lp~lG~pI~~iDvt~DGkw-ilaTc~tyLlLi~  645 (794)
T PF08553_consen  580 FSCFATTEDGYIAVGSNKGDIRLYDRLGKRAKTALPGLGDPIIGIDVTADGKW-ILATCKTYLLLID  645 (794)
T ss_pred             ceEEEecCCceEEEEeCCCcEEeecccchhhhhcCCCCCCCeeEEEecCCCcE-EEEeecceEEEEE
Confidence            34678888999999999999999985443 33333344677668999999998 7777766677665

Vid27p is a cytoplasmic protein of unknown function, possibly regulates import of fructose-1,6-bisphosphatase into Vacuolar Import and Degradation (Vid) vesicles and is not essential for proteasome-dependent degradation of fructose-1,6-bisphosphatase (FBPase) [, ].

>KOG1524 consensus WD40 repeat-containing protein CHE-2 [General function prediction only]

Probab=87.61  E-value=19  Score=31.69  Aligned_cols=84  Identities=14%  Similarity=0.140  Sum_probs=48.9

Q ss_pred             cEEEEeCCCcEEEEccCCceeEeccc-CCccccceEEccCCCEEEEEeCCCcEEEEe-cCC-cEEEEeccCCCcccCCcc
Q 026118           22 VLYTATGDGWIKRMHPNGTWEDWHQV-GSQSLLGLTTTKENNVIIVCDSQQGLLKVS-EEG-VTVLVSQFNGSQLRFAND   98 (243)
Q Consensus        22 ~l~~~~~~~~i~~~~~~g~~~~~~~~-~~~~~~~i~~~~~g~l~~v~~~~~gl~~~~-~~g-~~~~~~~~~~~~~~~~~~   98 (243)
                      .+.+++.+|++..++..+++...... .+... +-..++||.- .++...+|++++- .+| .+.....    .-..+.+
T Consensus        77 ~~~i~s~DGkf~il~k~~rVE~sv~AH~~A~~-~gRW~~dGtg-Llt~GEDG~iKiWSrsGMLRStl~Q----~~~~v~c  150 (737)
T KOG1524|consen   77 TLLICSNDGRFVILNKSARVERSISAHAAAIS-SGRWSPDGAG-LLTAGEDGVIKIWSRSGMLRSTVVQ----NEESIRC  150 (737)
T ss_pred             eEEEEcCCceEEEecccchhhhhhhhhhhhhh-hcccCCCCce-eeeecCCceEEEEeccchHHHHHhh----cCceeEE
Confidence            45677788889888888877654331 11112 3345678876 4444467888777 777 3321111    1234667


Q ss_pred             EEEcCCC-cEEEEe
Q 026118           99 VIEASDG-SLYFTV  111 (243)
Q Consensus        99 l~~d~~G-~l~v~~  111 (243)
                      ++.+|+. ++.++.
T Consensus       151 ~~W~p~S~~vl~c~  164 (737)
T KOG1524|consen  151 ARWAPNSNSIVFCQ  164 (737)
T ss_pred             EEECCCCCceEEec
Confidence            7888764 455553

>KOG0308 consensus Conserved WD40 repeat-containing protein [Function unknown]

Probab=87.55  E-value=18  Score=32.43  Aligned_cols=63  Identities=8%  Similarity=0.146  Sum_probs=36.8

Q ss_pred             ccEEEcCCCcEEEEe-CCCcEEEEccC--CceeEecccCCccccceEEccCCCEEEEEeCCCcEEEEe
Q 026118           13 EDVSVDGNGVLYTAT-GDGWIKRMHPN--GTWEDWHQVGSQSLLGLTTTKENNVIIVCDSQQGLLKVS   77 (243)
Q Consensus        13 ~~i~~d~~g~l~~~~-~~~~i~~~~~~--g~~~~~~~~~~~~~~~i~~~~~g~l~~v~~~~~gl~~~~   77 (243)
                      -+++-.+.|.++++. ..+-|..+|+.  .++....-...+.- .+.++.||+. .+.....|..++-
T Consensus       175 YSLA~N~t~t~ivsGgtek~lr~wDprt~~kimkLrGHTdNVr-~ll~~dDGt~-~ls~sSDgtIrlW  240 (735)
T KOG0308|consen  175 YSLAMNQTGTIIVSGGTEKDLRLWDPRTCKKIMKLRGHTDNVR-VLLVNDDGTR-LLSASSDGTIRLW  240 (735)
T ss_pred             eeeecCCcceEEEecCcccceEEeccccccceeeeeccccceE-EEEEcCCCCe-EeecCCCceEEee
Confidence            345556677777766 34456677743  23333322223444 7888999988 5555566766554

>KOG0284 consensus Polyadenylation factor I complex, subunit PFS2 [RNA processing and modification]

Probab=87.27  E-value=5.8  Score=33.36  Aligned_cols=147  Identities=14%  Similarity=0.061  Sum_probs=82.2

Q ss_pred             cccEEEcCCCcEEEEe-CCCcEEEEc-cCCceeEecc-cCCccccceEEccCCCEEEEEeCCCcEEEE-e-cCC--cEEE
Q 026118           12 PEDVSVDGNGVLYTAT-GDGWIKRMH-PNGTWEDWHQ-VGSQSLLGLTTTKENNVIIVCDSQQGLLKV-S-EEG--VTVL   84 (243)
Q Consensus        12 p~~i~~d~~g~l~~~~-~~~~i~~~~-~~g~~~~~~~-~~~~~~~~i~~~~~g~l~~v~~~~~gl~~~-~-~~g--~~~~   84 (243)
                      -.++++.++...|++. +++.|..+| ...+...... ....+. ++.-.|...+++.+. ...++++ | .+|  .-.+
T Consensus       183 IRdlafSpnDskF~t~SdDg~ikiWdf~~~kee~vL~GHgwdVk-svdWHP~kgLiasgs-kDnlVKlWDprSg~cl~tl  260 (464)
T KOG0284|consen  183 IRDLAFSPNDSKFLTCSDDGTIKIWDFRMPKEERVLRGHGWDVK-SVDWHPTKGLIASGS-KDNLVKLWDPRSGSCLATL  260 (464)
T ss_pred             hheeccCCCCceeEEecCCCeEEEEeccCCchhheeccCCCCcc-eeccCCccceeEEcc-CCceeEeecCCCcchhhhh
Confidence            4567888866666554 778888887 2222222212 222344 667777766734444 4456655 4 455  2111


Q ss_pred             EeccCCCcccCCccEEEcCCCcEEEEeCCCCCCcccccccccccCCCceEEEEeCCC-CeeEEeeccccccceEEEcCCC
Q 026118           85 VSQFNGSQLRFANDVIEASDGSLYFTVSSTKFTPAEYYLDLVSGEPHGVLLKYDPST-NQTSLVLDGLYFANGVALSEDE  163 (243)
Q Consensus        85 ~~~~~~~~~~~~~~l~~d~~G~l~v~~~~~~~~~~~~~~~~~~~~~~g~v~~~~~~~-~~~~~~~~~~~~~~gi~~~~dg  163 (243)
                      ..     ..+.+-++.+.++|+...+-+.                 .-.+-.||-.+ .++..+.........++++|-.
T Consensus       261 h~-----HKntVl~~~f~~n~N~Llt~sk-----------------D~~~kv~DiR~mkEl~~~r~Hkkdv~~~~WhP~~  318 (464)
T KOG0284|consen  261 HG-----HKNTVLAVKFNPNGNWLLTGSK-----------------DQSCKVFDIRTMKELFTYRGHKKDVTSLTWHPLN  318 (464)
T ss_pred             hh-----ccceEEEEEEcCCCCeeEEccC-----------------CceEEEEehhHhHHHHHhhcchhhheeecccccc
Confidence            11     1245667888899987776432                 11334455431 1222222233445667888866


Q ss_pred             CEEEEEEcCCCeEEEEEee
Q 026118          164 RFLVVCESWKFRCVKHFLK  182 (243)
Q Consensus       164 ~~l~v~~~~~~~i~~~~~~  182 (243)
                      .-|+++...+++|..+...
T Consensus       319 ~~lftsgg~Dgsvvh~~v~  337 (464)
T KOG0284|consen  319 ESLFTSGGSDGSVVHWVVG  337 (464)
T ss_pred             ccceeeccCCCceEEEecc
Confidence            6688887778888877765

>PHA02713 hypothetical protein; Provisional

Probab=87.25  E-value=21  Score=31.91  Aligned_cols=120  Identities=11%  Similarity=0.119  Sum_probs=55.7

Q ss_pred             cEEEEcc-CCceeEecccCC-ccccceEEccCCCEEEEEeCC-------CcEEEEe-cCC-cEEEEeccCCCcccCCccE
Q 026118           31 WIKRMHP-NGTWEDWHQVGS-QSLLGLTTTKENNVIIVCDSQ-------QGLLKVS-EEG-VTVLVSQFNGSQLRFANDV   99 (243)
Q Consensus        31 ~i~~~~~-~g~~~~~~~~~~-~~~~~i~~~~~g~l~~v~~~~-------~gl~~~~-~~g-~~~~~~~~~~~~~~~~~~l   99 (243)
                      .+.++|+ .+++......+. ....+.+. -++++ |+....       ..++++| .+. ...+..-+.  + ..-.++
T Consensus       273 ~v~~yd~~~~~W~~l~~mp~~r~~~~~a~-l~~~I-YviGG~~~~~~~~~~v~~Yd~~~n~W~~~~~m~~--~-R~~~~~  347 (557)
T PHA02713        273 CILVYNINTMEYSVISTIPNHIINYASAI-VDNEI-IIAGGYNFNNPSLNKVYKINIENKIHVELPPMIK--N-RCRFSL  347 (557)
T ss_pred             CEEEEeCCCCeEEECCCCCccccceEEEE-ECCEE-EEEcCCCCCCCccceEEEEECCCCeEeeCCCCcc--h-hhceeE
Confidence            3567774 455554432211 11113333 35566 777542       1267888 444 333221111  1 111122


Q ss_pred             EEcCCCcEEEEeCCCCCCcccccccccccCCCceEEEEeCCCCeeEEeeccc--cccceEEEcCCCCEEEEEE
Q 026118          100 IEASDGSLYFTVSSTKFTPAEYYLDLVSGEPHGVLLKYDPSTNQTSLVLDGL--YFANGVALSEDERFLVVCE  170 (243)
Q Consensus       100 ~~d~~G~l~v~~~~~~~~~~~~~~~~~~~~~~g~v~~~~~~~~~~~~~~~~~--~~~~gi~~~~dg~~l~v~~  170 (243)
                       +.-+|.+|+.....            .......+.+||+.+.++..+..-.  ....+++. -+|+ ||+..
T Consensus       348 -~~~~g~IYviGG~~------------~~~~~~sve~Ydp~~~~W~~~~~mp~~r~~~~~~~-~~g~-IYviG  405 (557)
T PHA02713        348 -AVIDDTIYAIGGQN------------GTNVERTIECYTMGDDKWKMLPDMPIALSSYGMCV-LDQY-IYIIG  405 (557)
T ss_pred             -EEECCEEEEECCcC------------CCCCCceEEEEECCCCeEEECCCCCcccccccEEE-ECCE-EEEEe
Confidence             33468899863110            0011246899999988877654211  11122332 2565 88864

>KOG0299 consensus U3 snoRNP-associated protein (contains WD40 repeats) [RNA processing and modification]

Probab=87.03  E-value=18  Score=30.90  Aligned_cols=70  Identities=16%  Similarity=0.109  Sum_probs=41.4

Q ss_pred             CCccEEEcCCCcEEEEeCCCCCCcccccccccccCCCceEEEEeCCCCeeEEee--ccccccceEEEcCCCCEEEEEEcC
Q 026118           95 FANDVIEASDGSLYFTVSSTKFTPAEYYLDLVSGEPHGVLLKYDPSTNQTSLVL--DGLYFANGVALSEDERFLVVCESW  172 (243)
Q Consensus        95 ~~~~l~~d~~G~l~v~~~~~~~~~~~~~~~~~~~~~~g~v~~~~~~~~~~~~~~--~~~~~~~gi~~~~dg~~l~v~~~~  172 (243)
                      .++++++-+.-+++.+.+.               ...-+||++......+.++.  .-....|+|+|+++|+.++++-..
T Consensus       382 Witsla~i~~sdL~asGS~---------------~G~vrLW~i~~g~r~i~~l~~ls~~GfVNsl~f~~sgk~ivagiGk  446 (479)
T KOG0299|consen  382 WITSLAVIPGSDLLASGSW---------------SGCVRLWKIEDGLRAINLLYSLSLVGFVNSLAFSNSGKRIVAGIGK  446 (479)
T ss_pred             ceeeeEecccCceEEecCC---------------CCceEEEEecCCccccceeeecccccEEEEEEEccCCCEEEEeccc
Confidence            4455666665556665332               12336888877644444442  224567999999999988877433


Q ss_pred             CCeEEEE
Q 026118          173 KFRCVKH  179 (243)
Q Consensus       173 ~~~i~~~  179 (243)
                      -.++-|+
T Consensus       447 EhRlGRW  453 (479)
T KOG0299|consen  447 EHRLGRW  453 (479)
T ss_pred             cccccee
Confidence            3344333

>KOG0305 consensus Anaphase promoting complex, Cdc20, Cdh1, and Ama1 subunits [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]

Probab=86.38  E-value=22  Score=31.12  Aligned_cols=154  Identities=8%  Similarity=-0.010  Sum_probs=82.7

Q ss_pred             ccccceEEccCCCEEEEEeCCCcEEEEec-C-C-cEEEEeccCCCcccCCccEEEcC-CCcEEEEeCCCCCCcccccccc
Q 026118           50 QSLLGLTTTKENNVIIVCDSQQGLLKVSE-E-G-VTVLVSQFNGSQLRFANDVIEAS-DGSLYFTVSSTKFTPAEYYLDL  125 (243)
Q Consensus        50 ~~~~~i~~~~~g~l~~v~~~~~gl~~~~~-~-g-~~~~~~~~~~~~~~~~~~l~~d~-~G~l~v~~~~~~~~~~~~~~~~  125 (243)
                      ... ++..++|++.+-.+..+..+..+|. + . ...+...     ...+-.++..| ...+..+--             
T Consensus       303 eVC-gLkws~d~~~lASGgnDN~~~Iwd~~~~~p~~~~~~H-----~aAVKA~awcP~q~~lLAsGG-------------  363 (484)
T KOG0305|consen  303 EVC-GLKWSPDGNQLASGGNDNVVFIWDGLSPEPKFTFTEH-----TAAVKALAWCPWQSGLLATGG-------------  363 (484)
T ss_pred             eee-eeEECCCCCeeccCCCccceEeccCCCccccEEEecc-----ceeeeEeeeCCCccCceEEcC-------------
Confidence            356 8999999998333333345666663 2 2 2222211     12344566776 444555421             


Q ss_pred             cccCCCceEEEEeCCCCeeEEeeccccccceEEEcCCCCEEEEEEc-CCCeEEEEEeecCCCcceEEeccCCCCCCCceE
Q 026118          126 VSGEPHGVLLKYDPSTNQTSLVLDGLYFANGVALSEDERFLVVCES-WKFRCVKHFLKVSGRTDREIFIDNLPGGPDNVN  204 (243)
Q Consensus       126 ~~~~~~g~v~~~~~~~~~~~~~~~~~~~~~gi~~~~dg~~l~v~~~-~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~i~  204 (243)
                        +.....|...|..+++.............|++++..+-+..+.- ..+.|..|+...  +.....+. .-..+.--++
T Consensus       364 --Gs~D~~i~fwn~~~g~~i~~vdtgsQVcsL~Wsk~~kEi~sthG~s~n~i~lw~~ps--~~~~~~l~-gH~~RVl~la  438 (484)
T KOG0305|consen  364 --GSADRCIKFWNTNTGARIDSVDTGSQVCSLIWSKKYKELLSTHGYSENQITLWKYPS--MKLVAELL-GHTSRVLYLA  438 (484)
T ss_pred             --CCcccEEEEEEcCCCcEecccccCCceeeEEEcCCCCEEEEecCCCCCcEEEEeccc--cceeeeec-CCcceeEEEE
Confidence              12345677788887776655555566788999998876766532 335455554422  11111111 1112233477


Q ss_pred             ECCCCC-EEEEEecCCchhhhhhh
Q 026118          205 LARDGS-FWISIIKMDPKGIQALQ  227 (243)
Q Consensus       205 ~d~~G~-lwv~~~~~~~~~~~~~~  227 (243)
                      +.++|. +.++..+...+.+....
T Consensus       439 ~SPdg~~i~t~a~DETlrfw~~f~  462 (484)
T KOG0305|consen  439 LSPDGETIVTGAADETLRFWNLFD  462 (484)
T ss_pred             ECCCCCEEEEecccCcEEeccccC
Confidence            888886 44444444444444444

>KOG3914 consensus WD repeat protein WDR4 [Function unknown]

Probab=86.37  E-value=9.8  Score=31.81  Aligned_cols=106  Identities=13%  Similarity=0.183  Sum_probs=56.8

Q ss_pred             ceEEccCCCEEEEEeCCCcEEEEe---cC-CcEEEEeccCCCcccCCccEEEcCC-CcEEEEeCCCCCCccccccccccc
Q 026118           54 GLTTTKENNVIIVCDSQQGLLKVS---EE-GVTVLVSQFNGSQLRFANDVIEASD-GSLYFTVSSTKFTPAEYYLDLVSG  128 (243)
Q Consensus        54 ~i~~~~~g~l~~v~~~~~gl~~~~---~~-g~~~~~~~~~~~~~~~~~~l~~d~~-G~l~v~~~~~~~~~~~~~~~~~~~  128 (243)
                      .....++++++++++..+..+.++   .. +.+.+......   ..+..+.+..+ -..-+++..               
T Consensus        67 ~~~~s~~~~llAv~~~~K~~~~f~~~~~~~~~kl~~~~~v~---~~~~ai~~~~~~~sv~v~dka---------------  128 (390)
T KOG3914|consen   67 LVLTSDSGRLVAVATSSKQRAVFDYRENPKGAKLLDVSCVP---KRPTAISFIREDTSVLVADKA---------------  128 (390)
T ss_pred             ccccCCCceEEEEEeCCCceEEEEEecCCCcceeeeEeecc---cCcceeeeeeccceEEEEeec---------------
Confidence            455668889878888766644444   22 23332221111   12334444433 345555421               


Q ss_pred             CCCceEEEEe---CCCCeeEEeeccccccceEEEcCCCCEEEEEEcCCCeEEEEEe
Q 026118          129 EPHGVLLKYD---PSTNQTSLVLDGLYFANGVALSEDERFLVVCESWKFRCVKHFL  181 (243)
Q Consensus       129 ~~~g~v~~~~---~~~~~~~~~~~~~~~~~gi~~~~dg~~l~v~~~~~~~i~~~~~  181 (243)
                         |.+|.++   ...+..+++.........+++++|.+.+..++ .+..|.....
T Consensus       129 ---gD~~~~di~s~~~~~~~~~lGhvSml~dVavS~D~~~IitaD-RDEkIRvs~y  180 (390)
T KOG3914|consen  129 ---GDVYSFDILSADSGRCEPILGHVSMLLDVAVSPDDQFIITAD-RDEKIRVSRY  180 (390)
T ss_pred             ---CCceeeeeecccccCcchhhhhhhhhheeeecCCCCEEEEec-CCceEEEEec
Confidence               2333333   22255555566667778899999999666665 4555655443

>KOG2111 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]

Probab=86.23  E-value=14  Score=30.21  Aligned_cols=71  Identities=24%  Similarity=0.158  Sum_probs=46.6

Q ss_pred             CCccEEEcCCCcEEEEeCCCCCCcccccccccccCCCceEEE-EeCCCCeeEEee-cc--ccccceEEEcCCCCEEEEEE
Q 026118           95 FANDVIEASDGSLYFTVSSTKFTPAEYYLDLVSGEPHGVLLK-YDPSTNQTSLVL-DG--LYFANGVALSEDERFLVVCE  170 (243)
Q Consensus        95 ~~~~l~~d~~G~l~v~~~~~~~~~~~~~~~~~~~~~~g~v~~-~~~~~~~~~~~~-~~--~~~~~gi~~~~dg~~l~v~~  170 (243)
                      .+.+|+..-+|++..+-+                 ..|.|.| +|..+|+..... .+  ......|+|+|+..+|-++ 
T Consensus       183 ~Iacv~Ln~~Gt~vATaS-----------------tkGTLIRIFdt~~g~~l~E~RRG~d~A~iy~iaFSp~~s~Lavs-  244 (346)
T KOG2111|consen  183 DIACVALNLQGTLVATAS-----------------TKGTLIRIFDTEDGTLLQELRRGVDRADIYCIAFSPNSSWLAVS-  244 (346)
T ss_pred             ceeEEEEcCCccEEEEec-----------------cCcEEEEEEEcCCCcEeeeeecCCchheEEEEEeCCCccEEEEE-
Confidence            344566667777766633                 3455554 687777654432 22  2345689999999977777 


Q ss_pred             cCCCeEEEEEeec
Q 026118          171 SWKFRCVKHFLKV  183 (243)
Q Consensus       171 ~~~~~i~~~~~~~  183 (243)
                      +..+.|..|.+.+
T Consensus       245 SdKgTlHiF~l~~  257 (346)
T KOG2111|consen  245 SDKGTLHIFSLRD  257 (346)
T ss_pred             cCCCeEEEEEeec
Confidence            4568888888765

>KOG2315 consensus Predicted translation initiation factor related to eIF-3a [Translation, ribosomal structure and biogenesis]

Probab=86.03  E-value=23  Score=31.10  Aligned_cols=131  Identities=9%  Similarity=0.041  Sum_probs=71.1

Q ss_pred             cEEEEccCCceeEecccCCccccceEEccCCCEEEEEeCC---CcEEEEecCCcEEEEeccCCCcccCCccEEEcCCCcE
Q 026118           31 WIKRMHPNGTWEDWHQVGSQSLLGLTTTKENNVIIVCDSQ---QGLLKVSEEGVTVLVSQFNGSQLRFANDVIEASDGSL  107 (243)
Q Consensus        31 ~i~~~~~~g~~~~~~~~~~~~~~~i~~~~~g~l~~v~~~~---~gl~~~~~~g~~~~~~~~~~~~~~~~~~l~~d~~G~l  107 (243)
                      .+|.++.+|.-..+......|..++..+++|+= |.+-++   ..+-.+|..+ .++..-.++..    +.+.+.|.|++
T Consensus       252 ~Lyll~t~g~s~~V~L~k~GPVhdv~W~~s~~E-F~VvyGfMPAkvtifnlr~-~~v~df~egpR----N~~~fnp~g~i  325 (566)
T KOG2315|consen  252 TLYLLATQGESVSVPLLKEGPVHDVTWSPSGRE-FAVVYGFMPAKVTIFNLRG-KPVFDFPEGPR----NTAFFNPHGNI  325 (566)
T ss_pred             eEEEEEecCceEEEecCCCCCceEEEECCCCCE-EEEEEecccceEEEEcCCC-CEeEeCCCCCc----cceEECCCCCE
Confidence            467776555444444433445547788888876 443332   3466666444 22222233322    46688999986


Q ss_pred             EEEeCCCCCCcccccccccccCCCceEEEEeCCCCeeEEeecc-ccccceEEEcCCCCEEEEEEcC-----CCeEEEEEe
Q 026118          108 YFTVSSTKFTPAEYYLDLVSGEPHGVLLKYDPSTNQTSLVLDG-LYFANGVALSEDERFLVVCESW-----KFRCVKHFL  181 (243)
Q Consensus       108 ~v~~~~~~~~~~~~~~~~~~~~~~g~v~~~~~~~~~~~~~~~~-~~~~~gi~~~~dg~~l~v~~~~-----~~~i~~~~~  181 (243)
                      .+--   +||           ...|.+-.+|..+.+  .+..- -....=..|+|||.+++++.+.     ++++-.|++
T Consensus       326 i~lA---GFG-----------NL~G~mEvwDv~n~K--~i~~~~a~~tt~~eW~PdGe~flTATTaPRlrvdNg~Kiwhy  389 (566)
T KOG2315|consen  326 ILLA---GFG-----------NLPGDMEVWDVPNRK--LIAKFKAANTTVFEWSPDGEYFLTATTAPRLRVDNGIKIWHY  389 (566)
T ss_pred             EEEe---ecC-----------CCCCceEEEeccchh--hccccccCCceEEEEcCCCcEEEEEeccccEEecCCeEEEEe
Confidence            5431   121           244667777776422  12110 1122336889999999888664     355555555


Q ss_pred             ec
Q 026118          182 KV  183 (243)
Q Consensus       182 ~~  183 (243)
                      ++
T Consensus       390 tG  391 (566)
T KOG2315|consen  390 TG  391 (566)
T ss_pred             cC
Confidence            54

>KOG4328 consensus WD40 protein [Function unknown]

Probab=85.87  E-value=21  Score=30.56  Aligned_cols=30  Identities=7%  Similarity=-0.168  Sum_probs=22.5

Q ss_pred             cccceEEEcCCCCEEEEEEcCCCeEEEEEee
Q 026118          152 YFANGVALSEDERFLVVCESWKFRCVKHFLK  182 (243)
Q Consensus       152 ~~~~gi~~~~dg~~l~v~~~~~~~i~~~~~~  182 (243)
                      ...+...|+|.+.. .+++..++.|..||..
T Consensus       370 rsV~sAyFSPs~gt-l~TT~~D~~IRv~dss  399 (498)
T KOG4328|consen  370 RSVNSAYFSPSGGT-LLTTCQDNEIRVFDSS  399 (498)
T ss_pred             ceeeeeEEcCCCCc-eEeeccCCceEEeecc
Confidence            34578899998886 4555677899999863

>COG4247 Phy 3-phytase (myo-inositol-hexaphosphate 3-phosphohydrolase) [Lipid metabolism]

Probab=85.69  E-value=16  Score=29.00  Aligned_cols=84  Identities=17%  Similarity=0.152  Sum_probs=45.8

Q ss_pred             eEEEEeCCCCeeEEeecc-------ccccceEEEcCC---CC-EEEEEEcCCCeEEEEEeecC---CCcceEEeccCCCC
Q 026118          133 VLLKYDPSTNQTSLVLDG-------LYFANGVALSED---ER-FLVVCESWKFRCVKHFLKVS---GRTDREIFIDNLPG  198 (243)
Q Consensus       133 ~v~~~~~~~~~~~~~~~~-------~~~~~gi~~~~d---g~-~l~v~~~~~~~i~~~~~~~~---~~~~~~~~~~~~~~  198 (243)
                      .+|.+||+.+.++.+...       ...+.|+++..+   |. +++|. ...+.+..|.+-..   ..+...+.--..+.
T Consensus       127 ~~y~Idp~~~~L~sitD~n~p~ss~~s~~YGl~lyrs~ktgd~yvfV~-~~qG~~~Qy~l~d~gnGkv~~k~vR~fk~~t  205 (364)
T COG4247         127 VFYKIDPNPQYLESITDSNAPYSSSSSSAYGLALYRSPKTGDYYVFVN-RRQGDIAQYKLIDQGNGKVGTKLVRQFKIPT  205 (364)
T ss_pred             EEEEeCCCccceeeccCCCCccccCcccceeeEEEecCCcCcEEEEEe-cCCCceeEEEEEecCCceEcceeeEeeecCC
Confidence            578999998777665433       344667777553   44 33333 34466777766432   22221111001223


Q ss_pred             CCCceEE-CCCCCEEEEEec
Q 026118          199 GPDNVNL-ARDGSFWISIIK  217 (243)
Q Consensus       199 ~~~~i~~-d~~G~lwv~~~~  217 (243)
                      .-.|+.. |.-|.|||+.-.
T Consensus       206 QTEG~VaDdEtG~LYIaeEd  225 (364)
T COG4247         206 QTEGMVADDETGFLYIAEED  225 (364)
T ss_pred             cccceeeccccceEEEeecc
Confidence            3456655 466899998644

>KOG0649 consensus WD40 repeat protein [General function prediction only]

Probab=85.64  E-value=16  Score=28.82  Aligned_cols=72  Identities=13%  Similarity=0.100  Sum_probs=48.4

Q ss_pred             cccCCccEEEcC-CCcEEEEeCCCCCCcccccccccccCCCceEEEEeCCCCeeEEeecc-ccccceEEE-cCCCCEEEE
Q 026118           92 QLRFANDVIEAS-DGSLYFTVSSTKFTPAEYYLDLVSGEPHGVLLKYDPSTNQTSLVLDG-LYFANGVAL-SEDERFLVV  168 (243)
Q Consensus        92 ~~~~~~~l~~d~-~G~l~v~~~~~~~~~~~~~~~~~~~~~~g~v~~~~~~~~~~~~~~~~-~~~~~gi~~-~~dg~~l~v  168 (243)
                      +...+|.|..|| ++.++++.                  ..+.+|.+|.++|++++...+ ..+...++- +..++ ++-
T Consensus       113 evPeINam~ldP~enSi~~Ag------------------GD~~~y~~dlE~G~i~r~~rGHtDYvH~vv~R~~~~q-ils  173 (325)
T KOG0649|consen  113 EVPEINAMWLDPSENSILFAG------------------GDGVIYQVDLEDGRIQREYRGHTDYVHSVVGRNANGQ-ILS  173 (325)
T ss_pred             cCCccceeEeccCCCcEEEec------------------CCeEEEEEEecCCEEEEEEcCCcceeeeeeecccCcc-eee
Confidence            345678899997 57788872                  346899999999999887543 334455554 44555 443


Q ss_pred             EEcCCCeEEEEEeec
Q 026118          169 CESWKFRCVKHFLKV  183 (243)
Q Consensus       169 ~~~~~~~i~~~~~~~  183 (243)
                      . ..++.+..+|..+
T Consensus       174 G-~EDGtvRvWd~kt  187 (325)
T KOG0649|consen  174 G-AEDGTVRVWDTKT  187 (325)
T ss_pred             c-CCCccEEEEeccc
Confidence            3 4567777777654

>PF15492 Nbas_N: Neuroblastoma-amplified sequence, N terminal

Probab=85.54  E-value=17  Score=29.11  Aligned_cols=144  Identities=10%  Similarity=0.112  Sum_probs=72.9

Q ss_pred             ceEEccCCCEEEEEeCCCcEEEEe--cCCcEEE-Ee-ccCCCcccCCccEEEcCCCcEEEEeCCCCCCcccccccccccC
Q 026118           54 GLTTTKENNVIIVCDSQQGLLKVS--EEGVTVL-VS-QFNGSQLRFANDVIEASDGSLYFTVSSTKFTPAEYYLDLVSGE  129 (243)
Q Consensus        54 ~i~~~~~g~l~~v~~~~~gl~~~~--~~g~~~~-~~-~~~~~~~~~~~~l~~d~~G~l~v~~~~~~~~~~~~~~~~~~~~  129 (243)
                      -++...+|++|.+.  .+..+.+.  .+.+..+ .. .....+...=.-++.+||+.+.+-..                 
T Consensus         2 ~~~~~~~Gk~lAi~--qd~~iEiRsa~Ddf~si~~kcqVpkD~~PQWRkl~WSpD~tlLa~a~-----------------   62 (282)
T PF15492_consen    2 HLALSSDGKLLAIL--QDQCIEIRSAKDDFSSIIGKCQVPKDPNPQWRKLAWSPDCTLLAYAE-----------------   62 (282)
T ss_pred             ceeecCCCcEEEEE--eccEEEEEeccCCchheeEEEecCCCCCchheEEEECCCCcEEEEEc-----------------
Confidence            35677899984443  34455554  4443222 22 22222333345689999998776432                 


Q ss_pred             CCceEEEEeCCCCeeEEeeccc-------cccceEEEcCCC---C---EEEEEEcCCCeEEEEEeecCC---CcceEEec
Q 026118          130 PHGVLLKYDPSTNQTSLVLDGL-------YFANGVALSEDE---R---FLVVCESWKFRCVKHFLKVSG---RTDREIFI  193 (243)
Q Consensus       130 ~~g~v~~~~~~~~~~~~~~~~~-------~~~~gi~~~~dg---~---~l~v~~~~~~~i~~~~~~~~~---~~~~~~~~  193 (243)
                      ..|.|..+|..+.++..+....       ....||.|-+-.   +   -|+|.+ ..+.+..|-+..++   ......| 
T Consensus        63 S~G~i~vfdl~g~~lf~I~p~~~~~~d~~~Aiagl~Fl~~~~s~~ws~ELlvi~-Y~G~L~Sy~vs~gt~q~y~e~hsf-  140 (282)
T PF15492_consen   63 STGTIRVFDLMGSELFVIPPAMSFPGDLSDAIAGLIFLEYKKSAQWSYELLVIN-YRGQLRSYLVSVGTNQGYQENHSF-  140 (282)
T ss_pred             CCCeEEEEecccceeEEcCcccccCCccccceeeeEeeccccccccceeEEEEe-ccceeeeEEEEcccCCcceeeEEE-
Confidence            2467888888755544432211       223456554322   1   244443 45667666664321   1111121 


Q ss_pred             cCCCCCCCc---eEECCCCC-EEEEEecC
Q 026118          194 DNLPGGPDN---VNLARDGS-FWISIIKM  218 (243)
Q Consensus       194 ~~~~~~~~~---i~~d~~G~-lwv~~~~~  218 (243)
                      .....+|.|   ++.++..+ |+|+..+.
T Consensus       141 sf~~~yp~Gi~~~vy~p~h~LLlVgG~~~  169 (282)
T PF15492_consen  141 SFSSHYPHGINSAVYHPKHRLLLVGGCEQ  169 (282)
T ss_pred             EecccCCCceeEEEEcCCCCEEEEeccCC
Confidence            122233444   67788877 56665543

>PF14269 Arylsulfotran_2: Arylsulfotransferase (ASST)

Probab=85.37  E-value=19  Score=29.43  Aligned_cols=37  Identities=27%  Similarity=0.365  Sum_probs=27.7

Q ss_pred             CCccEEEcCCCcEEEEeCCCCCCcccccccccccCCCceEEEEeCCCCeeEEee
Q 026118           95 FANDVIEASDGSLYFTVSSTKFTPAEYYLDLVSGEPHGVLLKYDPSTNQTSLVL  148 (243)
Q Consensus        95 ~~~~l~~d~~G~l~v~~~~~~~~~~~~~~~~~~~~~~g~v~~~~~~~~~~~~~~  148 (243)
                      .+|+|..+++|++.++-                 +....|+++++.+|++....
T Consensus       145 HiNsV~~~~~G~yLiS~-----------------R~~~~i~~I~~~tG~I~W~l  181 (299)
T PF14269_consen  145 HINSVDKDDDGDYLISS-----------------RNTSTIYKIDPSTGKIIWRL  181 (299)
T ss_pred             EeeeeeecCCccEEEEe-----------------cccCEEEEEECCCCcEEEEe
Confidence            56788888899988873                 23457999998888776554

>KOG0641 consensus WD40 repeat protein [General function prediction only]

Probab=85.37  E-value=15  Score=28.44  Aligned_cols=65  Identities=14%  Similarity=0.193  Sum_probs=40.2

Q ss_pred             cccEEEcCCCcEEEEe-CCCcEEEEcc-CCc-eeEecccCCccccceEEccCCCEEEEEeCCCcEEEEe
Q 026118           12 PEDVSVDGNGVLYTAT-GDGWIKRMHP-NGT-WEDWHQVGSQSLLGLTTTKENNVIIVCDSQQGLLKVS   77 (243)
Q Consensus        12 p~~i~~d~~g~l~~~~-~~~~i~~~~~-~g~-~~~~~~~~~~~~~~i~~~~~g~l~~v~~~~~gl~~~~   77 (243)
                      -.++++||.|+|.++. .+.....+|. .++ +..+........ ++.|+|...+|..+.+...|-.-|
T Consensus       234 vaav~vdpsgrll~sg~~dssc~lydirg~r~iq~f~phsadir-~vrfsp~a~yllt~syd~~ikltd  301 (350)
T KOG0641|consen  234 VAAVAVDPSGRLLASGHADSSCMLYDIRGGRMIQRFHPHSADIR-CVRFSPGAHYLLTCSYDMKIKLTD  301 (350)
T ss_pred             eEEEEECCCcceeeeccCCCceEEEEeeCCceeeeeCCCcccee-EEEeCCCceEEEEecccceEEEee
Confidence            3468999999988776 5666666663 333 455544333444 788888777655655544444334

>KOG0281 consensus Beta-TrCP (transducin repeats containing)/Slimb proteins [Function unknown]

Probab=85.26  E-value=7.4  Score=32.15  Aligned_cols=88  Identities=14%  Similarity=0.050  Sum_probs=46.7

Q ss_pred             eEEEEeCCCCeeEEeeccccccceEEEcC-CCCEEEEEEcCCCeEEEEEeecCCCcceEEeccCCCCCCCceEECCCCCE
Q 026118          133 VLLKYDPSTNQTSLVLDGLYFANGVALSE-DERFLVVCESWKFRCVKHFLKVSGRTDREIFIDNLPGGPDNVNLARDGSF  211 (243)
Q Consensus       133 ~v~~~~~~~~~~~~~~~~~~~~~gi~~~~-dg~~l~v~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~i~~d~~G~l  211 (243)
                      .|-..+..+++..+...+  +-.|||.-. .++ +.|+.+.++.|..++..-+..   -.+..+-..+...+.+|.. +|
T Consensus       341 TikvW~~st~efvRtl~g--HkRGIAClQYr~r-lvVSGSSDntIRlwdi~~G~c---LRvLeGHEeLvRciRFd~k-rI  413 (499)
T KOG0281|consen  341 TIKVWSTSTCEFVRTLNG--HKRGIACLQYRDR-LVVSGSSDNTIRLWDIECGAC---LRVLEGHEELVRCIRFDNK-RI  413 (499)
T ss_pred             eEEEEeccceeeehhhhc--ccccceehhccCe-EEEecCCCceEEEEeccccHH---HHHHhchHHhhhheeecCc-ee
Confidence            354556666776655432  334665543 455 889988899999999874321   1111111123445556533 34


Q ss_pred             EEEEecCCchhhhhhh
Q 026118          212 WISIIKMDPKGIQALQ  227 (243)
Q Consensus       212 wv~~~~~~~~~~~~~~  227 (243)
                      .-|...|..+++++..
T Consensus       414 VSGaYDGkikvWdl~a  429 (499)
T KOG0281|consen  414 VSGAYDGKIKVWDLQA  429 (499)
T ss_pred             eeccccceEEEEeccc
Confidence            4444444444444433

>PF00400 WD40: WD domain, G-beta repeat; InterPro: IPR019781 WD-40 repeats (also known as WD or beta-transducin repeats) are short ~40 amino acid motifs, often terminating in a Trp-Asp (W-D) dipeptide

Probab=84.73  E-value=4  Score=21.23  Aligned_cols=29  Identities=24%  Similarity=0.021  Sum_probs=20.9

Q ss_pred             ccccceEEEcCCCCEEEEEEcCCCeEEEEE
Q 026118          151 LYFANGVALSEDERFLVVCESWKFRCVKHF  180 (243)
Q Consensus       151 ~~~~~gi~~~~dg~~l~v~~~~~~~i~~~~  180 (243)
                      ....+.|+++|+++.+. +...++.|..||
T Consensus        11 ~~~i~~i~~~~~~~~~~-s~~~D~~i~vwd   39 (39)
T PF00400_consen   11 SSSINSIAWSPDGNFLA-SGSSDGTIRVWD   39 (39)
T ss_dssp             SSSEEEEEEETTSSEEE-EEETTSEEEEEE
T ss_pred             CCcEEEEEEecccccce-eeCCCCEEEEEC
Confidence            45567899999998444 445678887765

WD40 repeats usually assume a 7-8 bladed beta-propeller fold, but proteins have been found with 4 to 16 repeated units, which also form a circularised beta-propeller structure. WD-repeat proteins are a large family found in all eukaryotes and are implicated in a variety of functions ranging from signal transduction and transcription regulation to cell cycle control and apoptosis. Repeated WD40 motifs act as a site for protein-protein interaction, and proteins containing WD40 repeats are known to serve as platforms for the assembly of protein complexes or mediators of transient interplay among other proteins. The specificity of the proteins is determined by the sequences outside the repeats themselves. Examples of such complexes are G proteins (beta subunit is a beta-propeller), TAFII transcription factor, and E3 ubiquitin ligase [, ]. In Arabidopsis spp., several WD40-containing proteins act as key regulators of plant-specific developmental events.; PDB: 2ZKQ_a 3CFV_B 3CFS_B 1PEV_A 1NR0_A 1VYH_T 3RFH_A 3O2Z_T 3FRX_C 3U5G_g ....

>KOG0295 consensus WD40 repeat-containing protein [Function unknown]

Probab=84.63  E-value=6.8  Score=32.45  Aligned_cols=144  Identities=13%  Similarity=0.080  Sum_probs=69.4

Q ss_pred             cCCCcEE-EEeCCCcEEEEc-cCCceeEecccCCccccceEEccCCCEEEEEeCCCcEEEEecCC-cEEEEeccCCCccc
Q 026118           18 DGNGVLY-TATGDGWIKRMH-PNGTWEDWHQVGSQSLLGLTTTKENNVIIVCDSQQGLLKVSEEG-VTVLVSQFNGSQLR   94 (243)
Q Consensus        18 d~~g~l~-~~~~~~~i~~~~-~~g~~~~~~~~~~~~~~~i~~~~~g~l~~v~~~~~gl~~~~~~g-~~~~~~~~~~~~~~   94 (243)
                      -|+-.+- +++.++.|..+| .+|+.......-......|+++..|+++..+..+-.+..++-+. .+.+..  ......
T Consensus       117 hp~~~~v~~as~d~tikv~D~~tg~~e~~LrGHt~sv~di~~~a~Gk~l~tcSsDl~~~LWd~~~~~~c~ks--~~gh~h  194 (406)
T KOG0295|consen  117 HPSEALVVSASEDATIKVFDTETGELERSLRGHTDSVFDISFDASGKYLATCSSDLSAKLWDFDTFFRCIKS--LIGHEH  194 (406)
T ss_pred             ccCceEEEEecCCceEEEEEccchhhhhhhhccccceeEEEEecCccEEEecCCccchhheeHHHHHHHHHH--hcCccc
Confidence            3444333 344677888888 56666444332222233789999998733332221233344111 111110  001123


Q ss_pred             CCccEEEcCCCcEEEEeCCCCCCcccccccccccCCCceEEEEeCCCCe-eEEeeccccccceEEEcCCCCEEEEEEcCC
Q 026118           95 FANDVIEASDGSLYFTVSSTKFTPAEYYLDLVSGEPHGVLLKYDPSTNQ-TSLVLDGLYFANGVALSEDERFLVVCESWK  173 (243)
Q Consensus        95 ~~~~l~~d~~G~l~v~~~~~~~~~~~~~~~~~~~~~~g~v~~~~~~~~~-~~~~~~~~~~~~gi~~~~dg~~l~v~~~~~  173 (243)
                      .+.++++-|-|....+.+.                 ...|...+-+++- +..+.....+..-+.++.||. |..+-..+
T Consensus       195 ~vS~V~f~P~gd~ilS~sr-----------------D~tik~We~~tg~cv~t~~~h~ewvr~v~v~~DGt-i~As~s~d  256 (406)
T KOG0295|consen  195 GVSSVFFLPLGDHILSCSR-----------------DNTIKAWECDTGYCVKTFPGHSEWVRMVRVNQDGT-IIASCSND  256 (406)
T ss_pred             ceeeEEEEecCCeeeeccc-----------------ccceeEEecccceeEEeccCchHhEEEEEecCCee-EEEecCCC
Confidence            4567777888866666433                 1233333333332 222222233445566677776 66655555


Q ss_pred             CeEEEEEe
Q 026118          174 FRCVKHFL  181 (243)
Q Consensus       174 ~~i~~~~~  181 (243)
                      +.|..+-.
T Consensus       257 qtl~vW~~  264 (406)
T KOG0295|consen  257 QTLRVWVV  264 (406)
T ss_pred             ceEEEEEe
Confidence            65555544

>smart00564 PQQ beta-propeller repeat

Probab=84.43  E-value=2  Score=21.66  Aligned_cols=25  Identities=20%  Similarity=0.395  Sum_probs=18.9

Q ss_pred             cCCCcEEEEeCCCcEEEEcc-CCcee
Q 026118           18 DGNGVLYTATGDGWIKRMHP-NGTWE   42 (243)
Q Consensus        18 d~~g~l~~~~~~~~i~~~~~-~g~~~   42 (243)
                      ..+|.+|+++.++.++.+|. +|+..
T Consensus         4 ~~~~~v~~~~~~g~l~a~d~~~G~~~   29 (33)
T smart00564        4 LSDGTVYVGSTDGTLYALDAKTGEIL   29 (33)
T ss_pred             EECCEEEEEcCCCEEEEEEcccCcEE
Confidence            34678999988899999984 66543

Beta-propeller repeat occurring in enzymes with pyrrolo-quinoline quinone (PQQ) as cofactor, in Ire1p-like Ser/Thr kinases, and in prokaryotic dehydrogenases.

>KOG0640 consensus mRNA cleavage stimulating factor complex; subunit 1 [RNA processing and modification]

Probab=83.86  E-value=22  Score=29.04  Aligned_cols=150  Identities=9%  Similarity=0.081  Sum_probs=78.6

Q ss_pred             cccEEEcCCCc-EEEEeCCCcEEEEccC--CceeEeccc---CCccccceEEccCCCEEEEEeCCCc-EEEEe-cCC--c
Q 026118           12 PEDVSVDGNGV-LYTATGDGWIKRMHPN--GTWEDWHQV---GSQSLLGLTTTKENNVIIVCDSQQG-LLKVS-EEG--V   81 (243)
Q Consensus        12 p~~i~~d~~g~-l~~~~~~~~i~~~~~~--g~~~~~~~~---~~~~~~~i~~~~~g~l~~v~~~~~g-l~~~~-~~g--~   81 (243)
                      -.+|.+-|.|. |.+++...-+..+|-+  ..+......   .+... .+.+++.|++ |++....| |-.+| -.+  +
T Consensus       219 vrsiSfHPsGefllvgTdHp~~rlYdv~T~QcfvsanPd~qht~ai~-~V~Ys~t~~l-YvTaSkDG~IklwDGVS~rCv  296 (430)
T KOG0640|consen  219 VRSISFHPSGEFLLVGTDHPTLRLYDVNTYQCFVSANPDDQHTGAIT-QVRYSSTGSL-YVTASKDGAIKLWDGVSNRCV  296 (430)
T ss_pred             eeeEeecCCCceEEEecCCCceeEEeccceeEeeecCccccccccee-EEEecCCccE-EEEeccCCcEEeeccccHHHH
Confidence            45677778774 6677655545555522  112111110   01223 5678899999 99886666 44555 233  4


Q ss_pred             EEEEeccCCCcccCCccEEEcCCCcEEEEeCCCCCCcccccccccccCCCceEEEEeCCCCeeE-Eeecc-----ccccc
Q 026118           82 TVLVSQFNGSQLRFANDVIEASDGSLYFTVSSTKFTPAEYYLDLVSGEPHGVLLKYDPSTNQTS-LVLDG-----LYFAN  155 (243)
Q Consensus        82 ~~~~~~~~~~~~~~~~~l~~d~~G~l~v~~~~~~~~~~~~~~~~~~~~~~g~v~~~~~~~~~~~-~~~~~-----~~~~~  155 (243)
                      +.+.....+   ..+-+..+..+|++.++. +                ....+......+++.. .....     .....
T Consensus       297 ~t~~~AH~g---sevcSa~Ftkn~kyiLsS-G----------------~DS~vkLWEi~t~R~l~~YtGAg~tgrq~~rt  356 (430)
T KOG0640|consen  297 RTIGNAHGG---SEVCSAVFTKNGKYILSS-G----------------KDSTVKLWEISTGRMLKEYTGAGTTGRQKHRT  356 (430)
T ss_pred             HHHHhhcCC---ceeeeEEEccCCeEEeec-C----------------CcceeeeeeecCCceEEEEecCCcccchhhhh
Confidence            444332222   334455677888877762 1                1112222333333332 22211     12233


Q ss_pred             eEEEcCCCCEEEEEEcCCCeEEEEEeec
Q 026118          156 GVALSEDERFLVVCESWKFRCVKHFLKV  183 (243)
Q Consensus       156 gi~~~~dg~~l~v~~~~~~~i~~~~~~~  183 (243)
                      ...|+....++...+...+++..+|..+
T Consensus       357 qAvFNhtEdyVl~pDEas~slcsWdaRt  384 (430)
T KOG0640|consen  357 QAVFNHTEDYVLFPDEASNSLCSWDART  384 (430)
T ss_pred             hhhhcCccceEEccccccCceeeccccc
Confidence            4566666777777777788888888653

>KOG0918 consensus Selenium-binding protein [Inorganic ion transport and metabolism]

Probab=83.73  E-value=8.9  Score=32.31  Aligned_cols=20  Identities=30%  Similarity=0.095  Sum_probs=17.3

Q ss_pred             cccceEEEcCCCCEEEEEEc
Q 026118          152 YFANGVALSEDERFLVVCES  171 (243)
Q Consensus       152 ~~~~gi~~~~dg~~l~v~~~  171 (243)
                      ..|+-|.+|-||+.|||+++
T Consensus       389 GGPQMlQLSLDGKRLYVt~S  408 (476)
T KOG0918|consen  389 GGPQMLQLSLDGKRLYVTNS  408 (476)
T ss_pred             CCceeEEeccCCcEEEEEch
Confidence            46778999999999999965

>KOG1408 consensus WD40 repeat protein [Function unknown]

Probab=83.47  E-value=17  Score=33.13  Aligned_cols=109  Identities=15%  Similarity=0.120  Sum_probs=63.5

Q ss_pred             ceEEccCCCEEEEEeCCCcEEEEe-cCC--cEEEEeccCCCcccCCccEEEcCCCcEEEEeCCCCCCcccccccccccCC
Q 026118           54 GLTTTKENNVIIVCDSQQGLLKVS-EEG--VTVLVSQFNGSQLRFANDVIEASDGSLYFTVSSTKFTPAEYYLDLVSGEP  130 (243)
Q Consensus        54 ~i~~~~~g~l~~v~~~~~gl~~~~-~~g--~~~~~~~~~~~~~~~~~~l~~d~~G~l~v~~~~~~~~~~~~~~~~~~~~~  130 (243)
                      .|+++|.-++..++-.+..|..|+ ..|  .+.+..... . ...+--+..||.| +|++++-                .
T Consensus       601 Dm~Vdp~~k~v~t~cQDrnirif~i~sgKq~k~FKgs~~-~-eG~lIKv~lDPSg-iY~atSc----------------s  661 (1080)
T KOG1408|consen  601 DMAVDPTSKLVVTVCQDRNIRIFDIESGKQVKSFKGSRD-H-EGDLIKVILDPSG-IYLATSC----------------S  661 (1080)
T ss_pred             EeeeCCCcceEEEEecccceEEEeccccceeeeeccccc-C-CCceEEEEECCCc-cEEEEee----------------c
Confidence            567777766533333345677777 666  333322111 1 0123356778888 4554431                1


Q ss_pred             CceEEEEeCCCCeeEE-eeccccccceEEEcCCCCEEEEEEcCCCeEEEEEee
Q 026118          131 HGVLLKYDPSTNQTSL-VLDGLYFANGVALSEDERFLVVCESWKFRCVKHFLK  182 (243)
Q Consensus       131 ~g~v~~~~~~~~~~~~-~~~~~~~~~gi~~~~dg~~l~v~~~~~~~i~~~~~~  182 (243)
                      .-.|..||--+|+.-. .........|+.|.+|=+.| ++-.+++.|+.+.+.
T Consensus       662 dktl~~~Df~sgEcvA~m~GHsE~VTG~kF~nDCkHl-ISvsgDgCIFvW~lp  713 (1080)
T KOG1408|consen  662 DKTLCFVDFVSGECVAQMTGHSEAVTGVKFLNDCKHL-ISVSGDGCIFVWKLP  713 (1080)
T ss_pred             CCceEEEEeccchhhhhhcCcchheeeeeecccchhh-eeecCCceEEEEECc
Confidence            2357778877676432 23334557899999998855 455678899988764

>PF01731 Arylesterase: Arylesterase; InterPro: IPR002640 The serum paraoxonases/arylesterases are enzymes that catalyse the hydrolysis of the toxic metabolites of a variety of organophosphorus insecticides

Probab=83.31  E-value=6.2  Score=25.58  Aligned_cols=46  Identities=11%  Similarity=0.018  Sum_probs=29.2

Q ss_pred             CcEEEEccCCceeEecccCCccccceEEccCCCEEEEEeCC-CcEEEEe
Q 026118           30 GWIKRMHPNGTWEDWHQVGSQSLLGLTTTKENNVIIVCDSQ-QGLLKVS   77 (243)
Q Consensus        30 ~~i~~~~~~g~~~~~~~~~~~~~~~i~~~~~g~l~~v~~~~-~gl~~~~   77 (243)
                      +.|..+++ ++.+........|+ ||+++++++.+||+... +.|..+.
T Consensus        36 ~~Vvyyd~-~~~~~va~g~~~aN-GI~~s~~~k~lyVa~~~~~~I~vy~   82 (86)
T PF01731_consen   36 GNVVYYDG-KEVKVVASGFSFAN-GIAISPDKKYLYVASSLAHSIHVYK   82 (86)
T ss_pred             ceEEEEeC-CEeEEeeccCCCCc-eEEEcCCCCEEEEEeccCCeEEEEE
Confidence            44555653 23333333335678 99999999988999865 3455554

The enzymes hydrolyse a broad spectrum of organophosphate substrates, including paraoxon and a number of aromatic carboxylic acid esters (e.g., phenyl acetate), and hence confer resistance to organophosphate toxicity []. Mammals have 3 distinct paraoxonase types, termed PON1-3 [, ]. In mice and humans, the PON genes are found on the same chromosome in close proximity. PON activity has been found in variety of tissues, with highest levels in liver and serum - the source of serum PON is thought to be the liver. Unlike mammals, fish and avian species lack paraoxonase activity. Human and rabbit PONs appear to have two distinct Ca2+ binding sites, one required for stability and one required for catalytic activity. The Ca2+ dependency of PONs suggests a mechanism of hydrolysis where Ca2+ acts as the electrophillic catalyst, like that proposed for phospholipase A2. The paraoxonase enzymes, PON1 and PON3, are high density lipoprotein (HDL)- associated proteins capable of preventing oxidative modification of low density lipoproteins (LPL) []. Although PON2 has oxidative properties, the enzyme does not associate with HDL. Within a given species, PON1, PON2 and PON3 share ~60% amino acid sequence identity, whereas between mammalian species particular PONs (1,2 or 3) share 79-90% identity at the amino acid level. Human PON1 and PON3 share numerous conserved phosphorylation and N-glycosylation sites; however, it is not known whether the PON proteins are modified at these sites, or whether modification at these sites is required for activity in vivo []. This family consists of arylesterases (Also known as serum paraoxonase) 3.1.1.2 from EC. These enzymes hydrolyse organophosphorus esters such as paraoxon and are found in the liver and blood. They confer resistance to organophosphate toxicity []. Human arylesterase (PON1) P27169 from SWISSPROT is associated with HDL and may protect against LDL oxidation [].; GO: 0004064 arylesterase activity

>KOG0292 consensus Vesicle coat complex COPI, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]

Probab=83.29  E-value=41  Score=31.72  Aligned_cols=153  Identities=13%  Similarity=0.146  Sum_probs=83.1

Q ss_pred             ccCCcccEEEcCCCc-EEEEeCCCcEEEEc-cCCc-eeEecccCCccccceEEccCCCEEEEEeCCC-cEEEEe-cCCcE
Q 026118            8 IVNHPEDVSVDGNGV-LYTATGDGWIKRMH-PNGT-WEDWHQVGSQSLLGLTTTKENNVIIVCDSQQ-GLLKVS-EEGVT   82 (243)
Q Consensus         8 ~~~~p~~i~~d~~g~-l~~~~~~~~i~~~~-~~g~-~~~~~~~~~~~~~~i~~~~~g~l~~v~~~~~-gl~~~~-~~g~~   82 (243)
                      .-.+..+|++-|..- +.++-..|.|-.+| .-++ +.+|... ..|..|+.|.+.+-+ ||...+. .|-.++ ... +
T Consensus         8 kSsRvKglsFHP~rPwILtslHsG~IQlWDYRM~tli~rFdeH-dGpVRgv~FH~~qpl-FVSGGDDykIkVWnYk~r-r   84 (1202)
T KOG0292|consen    8 KSSRVKGLSFHPKRPWILTSLHSGVIQLWDYRMGTLIDRFDEH-DGPVRGVDFHPTQPL-FVSGGDDYKIKVWNYKTR-R   84 (1202)
T ss_pred             ccccccceecCCCCCEEEEeecCceeeeehhhhhhHHhhhhcc-CCccceeeecCCCCe-EEecCCccEEEEEecccc-e
Confidence            345677888888653 33344778888887 3343 3333322 335559999999999 8876554 344444 322 1


Q ss_pred             EEEeccCCCcccCCccEEEcCCCcEEEEeCCCCCCcccccccccccCCCceEEEEeCCCCeeEEeecc-ccccceEEEcC
Q 026118           83 VLVSQFNGSQLRFANDVIEASDGSLYFTVSSTKFTPAEYYLDLVSGEPHGVLLKYDPSTNQTSLVLDG-LYFANGVALSE  161 (243)
Q Consensus        83 ~~~~~~~~~~~~~~~~l~~d~~G~l~v~~~~~~~~~~~~~~~~~~~~~~g~v~~~~~~~~~~~~~~~~-~~~~~gi~~~~  161 (243)
                      -+.. .-+ ...++..+.+.+.- =|+-..+                ....|-..+-.+++...+.++ ..+.....|+|
T Consensus        85 clft-L~G-HlDYVRt~~FHhey-PWIlSAS----------------DDQTIrIWNwqsr~~iavltGHnHYVMcAqFhp  145 (1202)
T KOG0292|consen   85 CLFT-LLG-HLDYVRTVFFHHEY-PWILSAS----------------DDQTIRIWNWQSRKCIAVLTGHNHYVMCAQFHP  145 (1202)
T ss_pred             ehhh-hcc-ccceeEEeeccCCC-ceEEEcc----------------CCCeEEEEeccCCceEEEEecCceEEEeeccCC
Confidence            1111 000 11233333443332 2332111                011333334444444333333 34456678899


Q ss_pred             CCCEEEEEEcCCCeEEEEEeec
Q 026118          162 DERFLVVCESWKFRCVKHFLKV  183 (243)
Q Consensus       162 dg~~l~v~~~~~~~i~~~~~~~  183 (243)
                      ... +.|+.+.+++|.++|+++
T Consensus       146 tED-lIVSaSLDQTVRVWDisG  166 (1202)
T KOG0292|consen  146 TED-LIVSASLDQTVRVWDISG  166 (1202)
T ss_pred             ccc-eEEEecccceEEEEeecc
Confidence            777 888888899999999875

>KOG1408 consensus WD40 repeat protein [Function unknown]

Probab=83.26  E-value=37  Score=31.17  Aligned_cols=103  Identities=13%  Similarity=0.060  Sum_probs=58.8

Q ss_pred             cccCCccEEEcCCCcEEEEeCCCCCCcccccccccccCCCceEEEEeCCCCeeEEeeccc----cccceEEEcCCCCEEE
Q 026118           92 QLRFANDVIEASDGSLYFTVSSTKFTPAEYYLDLVSGEPHGVLLKYDPSTNQTSLVLDGL----YFANGVALSEDERFLV  167 (243)
Q Consensus        92 ~~~~~~~l~~d~~G~l~v~~~~~~~~~~~~~~~~~~~~~~g~v~~~~~~~~~~~~~~~~~----~~~~gi~~~~dg~~l~  167 (243)
                      .....++|++||.-.+.++.-.                 .-.|-.|+..+++..+...+.    ..+--+..||-|.|+.
T Consensus       595 ~ktTlYDm~Vdp~~k~v~t~cQ-----------------Drnirif~i~sgKq~k~FKgs~~~eG~lIKv~lDPSgiY~a  657 (1080)
T KOG1408|consen  595 SKTTLYDMAVDPTSKLVVTVCQ-----------------DRNIRIFDIESGKQVKSFKGSRDHEGDLIKVILDPSGIYLA  657 (1080)
T ss_pred             ccceEEEeeeCCCcceEEEEec-----------------ccceEEEeccccceeeeecccccCCCceEEEEECCCccEEE
Confidence            3456789999997665554211                 124556777767665554332    3344577788885444


Q ss_pred             EEEcCCCeEEEEEeecCC-----CcceEEeccCCCCCCCc---eEECCCCCEEE
Q 026118          168 VCESWKFRCVKHFLKVSG-----RTDREIFIDNLPGGPDN---VNLARDGSFWI  213 (243)
Q Consensus       168 v~~~~~~~i~~~~~~~~~-----~~~~~~~~~~~~~~~~~---i~~d~~G~lwv  213 (243)
                      .+ ..+..|..||...+.     .++.+.+ .+....++.   |....||.|+|
T Consensus       658 tS-csdktl~~~Df~sgEcvA~m~GHsE~V-TG~kF~nDCkHlISvsgDgCIFv  709 (1080)
T KOG1408|consen  658 TS-CSDKTLCFVDFVSGECVAQMTGHSEAV-TGVKFLNDCKHLISVSGDGCIFV  709 (1080)
T ss_pred             Ee-ecCCceEEEEeccchhhhhhcCcchhe-eeeeecccchhheeecCCceEEE
Confidence            33 567789999986432     2222222 122223333   77778888776

>KOG0650 consensus WD40 repeat nucleolar protein Bop1, involved in ribosome biogenesis [Translation, ribosomal structure and biogenesis]

Probab=83.25  E-value=12  Score=33.29  Aligned_cols=113  Identities=11%  Similarity=0.070  Sum_probs=60.8

Q ss_pred             eEecccCCccccceEEccCCCEEEEEeCCCcEEEEe-cCC--cEEEEeccCCCcccCCccEEEcCCC-cEEEEeCCCCCC
Q 026118           42 EDWHQVGSQSLLGLTTTKENNVIIVCDSQQGLLKVS-EEG--VTVLVSQFNGSQLRFANDVIEASDG-SLYFTVSSTKFT  117 (243)
Q Consensus        42 ~~~~~~~~~~~~~i~~~~~g~l~~v~~~~~gl~~~~-~~g--~~~~~~~~~~~~~~~~~~l~~d~~G-~l~v~~~~~~~~  117 (243)
                      ..|....+.+. ...|.|....|+|++ ...|..+| ..+  ++.+..   +  .-.+..|++++.| +++++..     
T Consensus       560 ~PF~kskG~vq-~v~FHPs~p~lfVaT-q~~vRiYdL~kqelvKkL~t---g--~kwiS~msihp~GDnli~gs~-----  627 (733)
T KOG0650|consen  560 SPFRKSKGLVQ-RVKFHPSKPYLFVAT-QRSVRIYDLSKQELVKKLLT---G--SKWISSMSIHPNGDNLILGSY-----  627 (733)
T ss_pred             CchhhcCCcee-EEEecCCCceEEEEe-ccceEEEehhHHHHHHHHhc---C--CeeeeeeeecCCCCeEEEecC-----
Confidence            34433345566 778888777768887 45677777 333  332221   1  1245578899877 5777642     


Q ss_pred             cccccccccccCCCceEEEEeCCCC--eeEEeeccccccceEEEcCCCCEEEEEEcCCCeEEEEE
Q 026118          118 PAEYYLDLVSGEPHGVLLKYDPSTN--QTSLVLDGLYFANGVALSEDERFLVVCESWKFRCVKHF  180 (243)
Q Consensus       118 ~~~~~~~~~~~~~~g~v~~~~~~~~--~~~~~~~~~~~~~gi~~~~dg~~l~v~~~~~~~i~~~~  180 (243)
                                   ..+++-+|.+-.  -.+.+-........+++++.=. |+.+...++.+.+|.
T Consensus       628 -------------d~k~~WfDldlsskPyk~lr~H~~avr~Va~H~ryP-Lfas~sdDgtv~Vfh  678 (733)
T KOG0650|consen  628 -------------DKKMCWFDLDLSSKPYKTLRLHEKAVRSVAFHKRYP-LFASGSDDGTVIVFH  678 (733)
T ss_pred             -------------CCeeEEEEcccCcchhHHhhhhhhhhhhhhhccccc-eeeeecCCCcEEEEe
Confidence                         357888887732  1111111112234456665444 555544445555543

>PHA03098 kelch-like protein; Provisional

Probab=83.15  E-value=32  Score=30.42  Aligned_cols=134  Identities=12%  Similarity=0.022  Sum_probs=62.6

Q ss_pred             cEEEEcc-CCceeEecccC-CccccceEEccCCCEEEEEeCCC------cEEEEe-cCC-cEEEEeccCCCcccCCccEE
Q 026118           31 WIKRMHP-NGTWEDWHQVG-SQSLLGLTTTKENNVIIVCDSQQ------GLLKVS-EEG-VTVLVSQFNGSQLRFANDVI  100 (243)
Q Consensus        31 ~i~~~~~-~g~~~~~~~~~-~~~~~~i~~~~~g~l~~v~~~~~------gl~~~~-~~g-~~~~~~~~~~~~~~~~~~l~  100 (243)
                      .++++|+ ..++....... .+...+++. -++++ |+.....      .+.+++ .++ .......+.  + ....++ 
T Consensus       312 ~v~~yd~~~~~W~~~~~~~~~R~~~~~~~-~~~~l-yv~GG~~~~~~~~~v~~yd~~~~~W~~~~~lp~--~-r~~~~~-  385 (534)
T PHA03098        312 SVVSYDTKTKSWNKVPELIYPRKNPGVTV-FNNRI-YVIGGIYNSISLNTVESWKPGESKWREEPPLIF--P-RYNPCV-  385 (534)
T ss_pred             cEEEEeCCCCeeeECCCCCcccccceEEE-ECCEE-EEEeCCCCCEecceEEEEcCCCCceeeCCCcCc--C-CccceE-
Confidence            4677773 55565443211 111112322 35666 7665322      266777 444 433221111  1 111222 


Q ss_pred             EcCCCcEEEEeCCCCCCcccccccccccCCCceEEEEeCCCCeeEEeeccc-c-ccceEEEcCCCCEEEEEEcCC-----
Q 026118          101 EASDGSLYFTVSSTKFTPAEYYLDLVSGEPHGVLLKYDPSTNQTSLVLDGL-Y-FANGVALSEDERFLVVCESWK-----  173 (243)
Q Consensus       101 ~d~~G~l~v~~~~~~~~~~~~~~~~~~~~~~g~v~~~~~~~~~~~~~~~~~-~-~~~gi~~~~dg~~l~v~~~~~-----  173 (243)
                      ..-+|++|+......           .......+++||+.+.++.....-. . ....++. -+++ +|+..-.+     
T Consensus       386 ~~~~~~iYv~GG~~~-----------~~~~~~~v~~yd~~t~~W~~~~~~p~~r~~~~~~~-~~~~-iyv~GG~~~~~~~  452 (534)
T PHA03098        386 VNVNNLIYVIGGISK-----------NDELLKTVECFSLNTNKWSKGSPLPISHYGGCAIY-HDGK-IYVIGGISYIDNI  452 (534)
T ss_pred             EEECCEEEEECCcCC-----------CCcccceEEEEeCCCCeeeecCCCCccccCceEEE-ECCE-EEEECCccCCCCC
Confidence            234678888631100           0011246899999988887653211 1 1122332 3454 88864221     


Q ss_pred             ---CeEEEEEeec
Q 026118          174 ---FRCVKHFLKV  183 (243)
Q Consensus       174 ---~~i~~~~~~~  183 (243)
                         ..+++||+..
T Consensus       453 ~~~~~v~~yd~~~  465 (534)
T PHA03098        453 KVYNIVESYNPVT  465 (534)
T ss_pred             cccceEEEecCCC
Confidence               2378888764

>KOG2321 consensus WD40 repeat protein [General function prediction only]

Probab=82.08  E-value=32  Score=30.60  Aligned_cols=106  Identities=8%  Similarity=0.019  Sum_probs=51.4

Q ss_pred             ceEEccCCCEEEEEeCCCcEEEEe-cCC-cEEEEeccCCCcccCCccEEEcCCCcEEEEeCCCCCCcccccccccccCCC
Q 026118           54 GLTTTKENNVIIVCDSQQGLLKVS-EEG-VTVLVSQFNGSQLRFANDVIEASDGSLYFTVSSTKFTPAEYYLDLVSGEPH  131 (243)
Q Consensus        54 ~i~~~~~g~l~~v~~~~~gl~~~~-~~g-~~~~~~~~~~~~~~~~~~l~~d~~G~l~v~~~~~~~~~~~~~~~~~~~~~~  131 (243)
                      .+.|+.+|--+-|++..+.++.+| .+. ...+.......++.....+..+ ++...++...                  
T Consensus       233 al~F~d~gL~~aVGts~G~v~iyDLRa~~pl~~kdh~~e~pi~~l~~~~~~-~q~~v~S~Dk------------------  293 (703)
T KOG2321|consen  233 ALKFRDDGLHVAVGTSTGSVLIYDLRASKPLLVKDHGYELPIKKLDWQDTD-QQNKVVSMDK------------------  293 (703)
T ss_pred             EEEecCCceeEEeeccCCcEEEEEcccCCceeecccCCccceeeecccccC-CCceEEecch------------------
Confidence            788887775546666556688888 443 2111111111111111111111 1233333211                  


Q ss_pred             ceEEEEeCCCCeeEEeeccccccceEEEcCCCCEEEEEEcCCCeEEEE
Q 026118          132 GVLLKYDPSTNQTSLVLDGLYFANGVALSEDERFLVVCESWKFRCVKH  179 (243)
Q Consensus       132 g~v~~~~~~~~~~~~~~~~~~~~~gi~~~~dg~~l~v~~~~~~~i~~~  179 (243)
                      .-+-..|+.+|+.-...+.....+.+++-|++..++++.. +..+..|
T Consensus       294 ~~~kiWd~~~Gk~~asiEpt~~lND~C~~p~sGm~f~Ane-~~~m~~y  340 (703)
T KOG2321|consen  294 RILKIWDECTGKPMASIEPTSDLNDFCFVPGSGMFFTANE-SSKMHTY  340 (703)
T ss_pred             HHhhhcccccCCceeeccccCCcCceeeecCCceEEEecC-CCcceeE
Confidence            1122356666665554444445677888888885566643 3444444

>KOG0313 consensus Microtubule binding protein YTM1 (contains WD40 repeats) [Cytoskeleton]

Probab=81.95  E-value=29  Score=29.07  Aligned_cols=150  Identities=16%  Similarity=0.156  Sum_probs=93.0

Q ss_pred             CCcccEEEcCCCcEEEEe-CCCcEEEEc-cC---CceeEe--------------------c--ccCCccccceEEccCCC
Q 026118           10 NHPEDVSVDGNGVLYTAT-GDGWIKRMH-PN---GTWEDW--------------------H--QVGSQSLLGLTTTKENN   62 (243)
Q Consensus        10 ~~p~~i~~d~~g~l~~~~-~~~~i~~~~-~~---g~~~~~--------------------~--~~~~~~~~~i~~~~~g~   62 (243)
                      ..-++|.++++|..+++. .+..|-.++ +.   ......                    .  .....+...+.+++.+.
T Consensus       194 ~~V~sVsv~~sgtr~~SgS~D~~lkiWs~~~~~~~~~E~~s~~rrk~~~~~~~~~~r~P~vtl~GHt~~Vs~V~w~d~~v  273 (423)
T KOG0313|consen  194 RSVDSVSVDSSGTRFCSGSWDTMLKIWSVETDEEDELESSSNRRRKKQKREKEGGTRTPLVTLEGHTEPVSSVVWSDATV  273 (423)
T ss_pred             cceeEEEecCCCCeEEeecccceeeecccCCCccccccccchhhhhhhhhhhcccccCceEEecccccceeeEEEcCCCc
Confidence            345678889999777654 666666665 11   000000                    0  00122443566766666


Q ss_pred             EEEEEeCCCcEEEEe-cCC--cEEEEeccCCCcccCCccEEEcCCCcEEEEeCCCCCCcccccccccccCCCceEEEEeC
Q 026118           63 VIIVCDSQQGLLKVS-EEG--VTVLVSQFNGSQLRFANDVIEASDGSLYFTVSSTKFTPAEYYLDLVSGEPHGVLLKYDP  139 (243)
Q Consensus        63 l~~v~~~~~gl~~~~-~~g--~~~~~~~~~~~~~~~~~~l~~d~~G~l~v~~~~~~~~~~~~~~~~~~~~~~g~v~~~~~  139 (243)
                      + |.+.+++-|..+| ..|  ...+..   .   -..+++...+.-++.++.+.                 ...+-.+||
T Consensus       274 ~-yS~SwDHTIk~WDletg~~~~~~~~---~---ksl~~i~~~~~~~Ll~~gss-----------------dr~irl~DP  329 (423)
T KOG0313|consen  274 I-YSVSWDHTIKVWDLETGGLKSTLTT---N---KSLNCISYSPLSKLLASGSS-----------------DRHIRLWDP  329 (423)
T ss_pred             e-EeecccceEEEEEeecccceeeeec---C---cceeEeecccccceeeecCC-----------------CCceeecCC
Confidence            6 8888888888888 555  222221   1   13456677777778877433                 123556788


Q ss_pred             CCCeeE----EeeccccccceEEEcCCCCEEEEEEcCCCeEEEEEeec
Q 026118          140 STNQTS----LVLDGLYFANGVALSEDERFLVVCESWKFRCVKHFLKV  183 (243)
Q Consensus       140 ~~~~~~----~~~~~~~~~~gi~~~~dg~~l~v~~~~~~~i~~~~~~~  183 (243)
                      .++.-.    .+.....+..++-++|...+++++...++.+..+|...
T Consensus       330 R~~~gs~v~~s~~gH~nwVssvkwsp~~~~~~~S~S~D~t~klWDvRS  377 (423)
T KOG0313|consen  330 RTGDGSVVSQSLIGHKNWVSSVKWSPTNEFQLVSGSYDNTVKLWDVRS  377 (423)
T ss_pred             CCCCCceeEEeeecchhhhhheecCCCCceEEEEEecCCeEEEEEecc
Confidence            765322    23344557788999999999999999999999998764

>PF15390 DUF4613: Domain of unknown function (DUF4613)

Probab=81.60  E-value=18  Score=32.25  Aligned_cols=65  Identities=11%  Similarity=0.080  Sum_probs=47.9

Q ss_pred             ccccccceEEEcCCCCEEEEEEcCCCeEEEEEeecCCCcceEEeccCCCCCCCceEECCCCCEEE
Q 026118          149 DGLYFANGVALSEDERFLVVCESWKFRCVKHFLKVSGRTDREIFIDNLPGGPDNVNLARDGSFWI  213 (243)
Q Consensus       149 ~~~~~~~gi~~~~dg~~l~v~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~i~~d~~G~lwv  213 (243)
                      .+.-.|.=|||++..+.+-|+...-+.|..|.+....+.+.+-+--....+|.||++=.|..|.+
T Consensus       336 PGILvPDliAfn~kaq~VAVASNTcn~ilVYSv~~s~mPniQqIqLe~~ERPKGiCFltdklLLi  400 (671)
T PF15390_consen  336 PGILVPDLIAFNPKAQVVAVASNTCNIILVYSVTPSSMPNIQQIQLESNERPKGICFLTDKLLLI  400 (671)
T ss_pred             ccccccceeeeCCcCCEEEEEecCCcEEEEEEeccccCCCeeEEEcccCCCCceeeEccCCeEEE
Confidence            44556788999999998888876678899998876566665544334456899999987776544

>KOG2394 consensus WD40 protein DMR-N9 [General function prediction only]

Probab=81.30  E-value=8.1  Score=33.77  Aligned_cols=70  Identities=21%  Similarity=0.118  Sum_probs=42.2

Q ss_pred             CCccEEEcCCCcEEEEeCCCCCCcccccccccccCCCceEEEEeCCCCeeEEeec-cccccceEEEcCCCCEEEEEEcCC
Q 026118           95 FANDVIEASDGSLYFTVSSTKFTPAEYYLDLVSGEPHGVLLKYDPSTNQTSLVLD-GLYFANGVALSEDERFLVVCESWK  173 (243)
Q Consensus        95 ~~~~l~~d~~G~l~v~~~~~~~~~~~~~~~~~~~~~~g~v~~~~~~~~~~~~~~~-~~~~~~gi~~~~dg~~l~v~~~~~  173 (243)
                      .++.+++.+||....+.+.                 +|-|-.+|-++.++.-+.. ....--.++|+|||+++.+.. .+
T Consensus       292 ~in~f~FS~DG~~LA~VSq-----------------DGfLRvF~fdt~eLlg~mkSYFGGLLCvcWSPDGKyIvtGG-ED  353 (636)
T KOG2394|consen  292 SINEFAFSPDGKYLATVSQ-----------------DGFLRIFDFDTQELLGVMKSYFGGLLCVCWSPDGKYIVTGG-ED  353 (636)
T ss_pred             cccceeEcCCCceEEEEec-----------------CceEEEeeccHHHHHHHHHhhccceEEEEEcCCccEEEecC-Cc
Confidence            5677888888887776543                 2344445544444332221 122334589999999776664 45


Q ss_pred             CeEEEEEee
Q 026118          174 FRCVKHFLK  182 (243)
Q Consensus       174 ~~i~~~~~~  182 (243)
                      .-|.+|...
T Consensus       354 DLVtVwSf~  362 (636)
T KOG2394|consen  354 DLVTVWSFE  362 (636)
T ss_pred             ceEEEEEec
Confidence            667777653

>KOG2314 consensus Translation initiation factor 3, subunit b (eIF-3b) [Translation, ribosomal structure and biogenesis]

Probab=80.42  E-value=21  Score=31.55  Aligned_cols=103  Identities=17%  Similarity=0.103  Sum_probs=56.7

Q ss_pred             cEEEcCCCcEEEEeCCCCCCcccccccccccCCCceEEEEeCCCCeeEEeec-cccccceEEEcCCCCEEEEEEcC--CC
Q 026118           98 DVIEASDGSLYFTVSSTKFTPAEYYLDLVSGEPHGVLLKYDPSTNQTSLVLD-GLYFANGVALSEDERFLVVCESW--KF  174 (243)
Q Consensus        98 ~l~~d~~G~l~v~~~~~~~~~~~~~~~~~~~~~~g~v~~~~~~~~~~~~~~~-~~~~~~gi~~~~dg~~l~v~~~~--~~  174 (243)
                      ..+.+|.|+-+..-++.            +...+-..|.+.....+++.+.. +....|.+.++|.|+++.++.-.  ++
T Consensus       450 ~FaWEP~gdkF~vi~g~------------~~k~tvsfY~~e~~~~~~~lVk~~dk~~~N~vfwsPkG~fvvva~l~s~~g  517 (698)
T KOG2314|consen  450 AFAWEPHGDKFAVISGN------------TVKNTVSFYAVETNIKKPSLVKELDKKFANTVFWSPKGRFVVVAALVSRRG  517 (698)
T ss_pred             eeeeccCCCeEEEEEcc------------ccccceeEEEeecCCCchhhhhhhcccccceEEEcCCCcEEEEEEeccccc
Confidence            45677888766553220            11223346666644343333211 22567899999999988887543  56


Q ss_pred             eEEEEEeecCCCcceEEeccCCCCCCCceEECCCCCEEEEE
Q 026118          175 RCVKHFLKVSGRTDREIFIDNLPGGPDNVNLARDGSFWISI  215 (243)
Q Consensus       175 ~i~~~~~~~~~~~~~~~~~~~~~~~~~~i~~d~~G~lwv~~  215 (243)
                      .+.-||.+-   ...+............+..|+.|+..+..
T Consensus       518 ~l~F~D~~~---a~~k~~~~~eh~~at~veWDPtGRYvvT~  555 (698)
T KOG2314|consen  518 DLEFYDTDY---ADLKDTASPEHFAATEVEWDPTGRYVVTS  555 (698)
T ss_pred             ceEEEecch---hhhhhccCccccccccceECCCCCEEEEe
Confidence            677777652   12222221222234557888888765543

>TIGR03074 PQQ_membr_DH membrane-bound PQQ-dependent dehydrogenase, glucose/quinate/shikimate family

Probab=80.34  E-value=52  Score=30.85  Aligned_cols=23  Identities=13%  Similarity=0.153  Sum_probs=18.7

Q ss_pred             CCcEEEEeCCCcEEEEc-cCCcee
Q 026118           20 NGVLYTATGDGWIKRMH-PNGTWE   42 (243)
Q Consensus        20 ~g~l~~~~~~~~i~~~~-~~g~~~   42 (243)
                      +++||+++.+++|+.+| .+|+..
T Consensus       260 ~~rV~~~T~Dg~LiALDA~TGk~~  283 (764)
T TIGR03074       260 ARRIILPTSDARLIALDADTGKLC  283 (764)
T ss_pred             CCEEEEecCCCeEEEEECCCCCEE
Confidence            45899999899999999 567655

This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Members of this family have several predicted transmembrane helices in the N-terminal region, and include the quinoprotein glucose dehydrogenase (EC 1.1.5.2) of Escherichia coli and the quinate/shikimate dehydrogenase of Acinetobacter sp. ADP1 (EC 1.1.99.25). Sequences closely related except for the absense of the N-terminal hydrophobic region, scoring in the gray zone between the trusted and noise cutoffs, include PQQ-dependent glycerol (EC 1.1.99.22) and and other polyol (sugar alcohol) dehydrogenases.

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	243
2fp8_A	322	Structure Of Strictosidine Synthase, The Biosynthet		4e-13
2v91_A	302	Structure Of Strictosidine Synthase In Complex With		4e-13
2fpb_A	322	Structure Of Strictosidine Synthase, The Biosynthet		6e-11

>pdb|2FP8|A Chain A, Structure Of Strictosidine Synthase, The Biosynthetic Entry To The Monoterpenoid Indole Alkaloid Family Length = 322

Iteration: 1
 Score = 71.6 bits (174), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 60/228 (26%), Positives = 104/228 (45%), Gaps = 23/228 (10%)
Query: 18  DGNGVLYTATGDGWIKRMHPNGTW-----EDWHQVGSQSLLG----LTTTKENNVIIVCD 68
           DG  + Y     G++   + +  W     E+      + L G    ++   +NN + + D
Sbjct: 39  DGRVIKYEGPNSGFVDFAYASPYWNKAFCENSTDAEKRPLCGRTYDISYNLQNNQLYIVD 98
Query: 69  SQQGLLKVSEEG--VTVLVSQFNGSQLRFANDV-IEASDGSLYFTVSSTKFTPAEYYLDL 125
               L  V  EG   T L +  +G   ++   V ++   G +YFT  ST +        +
Sbjct: 99  CYYHLSVVGSEGGHATQLATSVDGVPFKWLYAVTVDQRTGIVYFTDVSTLYDDRGVQQIM 158
Query: 126 VSGEPHGVLLKYDPSTNQTSLVLDGLYFANGVALSEDERFLVVCESWKFRCVKHFLKVSG 185
            + +  G L+KYDPST +T+L+L  L+   G  +S D  F++V E    + VK++L+   
Sbjct: 159 DTSDKTGRLIKYDPSTKETTLLLKELHVPGGAEVSADSSFVLVAEFLSHQIVKYWLEGPK 218
Query: 186 RTDREIFIDNLPGGPDNVNLARDGSFWISII---------KMDPKGIQ 224
           +   E+ +  +P  P N+    DG FW+S           ++DPKGI+
Sbjct: 219 KGTAEVLV-KIP-NPGNIKRNADGHFWVSSSEELDGNMHGRVDPKGIK 264

>pdb|2V91|A Chain A, Structure Of Strictosidine Synthase In Complex With Strictosidine Length = 302

Iteration: 1
 Score = 71.6 bits (174), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 60/228 (26%), Positives = 104/228 (45%), Gaps = 23/228 (10%)
Query: 18  DGNGVLYTATGDGWIKRMHPNGTW-----EDWHQVGSQSLLG----LTTTKENNVIIVCD 68
           DG  + Y     G++   + +  W     E+      + L G    ++   +NN + + D
Sbjct: 30  DGRVIKYEGPNSGFVDFAYASPYWNKAFCENSTDAEKRPLCGRTYDISYNLQNNQLYIVD 89
Query: 69  SQQGLLKVSEEG--VTVLVSQFNGSQLRFANDV-IEASDGSLYFTVSSTKFTPAEYYLDL 125
               L  V  EG   T L +  +G   ++   V ++   G +YFT  ST +        +
Sbjct: 90  CYYHLSVVGSEGGHATQLATSVDGVPFKWLYAVTVDQRTGIVYFTDVSTLYDDRGVQQIM 149
Query: 126 VSGEPHGVLLKYDPSTNQTSLVLDGLYFANGVALSEDERFLVVCESWKFRCVKHFLKVSG 185
            + +  G L+KYDPST +T+L+L  L+   G  +S D  F++V E    + VK++L+   
Sbjct: 150 DTSDKTGRLIKYDPSTKETTLLLKELHVPGGAEVSADSSFVLVAEFLSHQIVKYWLEGPK 209
Query: 186 RTDREIFIDNLPGGPDNVNLARDGSFWISII---------KMDPKGIQ 224
           +   E+ +  +P  P N+    DG FW+S           ++DPKGI+
Sbjct: 210 KGTAEVLV-KIP-NPGNIKRNADGHFWVSSSEELDGNMHGRVDPKGIK 255

>pdb|2FPB|A Chain A, Structure Of Strictosidine Synthase, The Biosynthetic Entry To The Monoterpenoid Indole Alkaloid Family Length = 322

Iteration: 1
 Score = 64.3 bits (155), Expect = 6e-11,   Method: Compositional matrix adjust.
 Identities = 51/177 (28%), Positives = 83/177 (46%), Gaps = 14/177 (7%)
Query: 60  ENNVIIVCDSQQGLLKVSEEG--VTVLVSQFNGSQLRFANDV-IEASDGSLYFTVSSTKF 116
           +NN   + D    L  V  EG   T L +  +G   ++   V ++   G +YFT  ST +
Sbjct: 90  QNNQXYIVDCYYHLSVVGSEGGHATQLATSVDGVPFKWLYAVTVDQRTGIVYFTDVSTLY 149
Query: 117 TPAEYYLDLVSGEPHGVLLKYDPSTNQTSLVLDGLYFANGVALSEDERFLVVCESWKFRC 176
                     + +  G L KYDPST +T+L+   L+   G  +S D  F++V E    + 
Sbjct: 150 DDRGVQQIXDTSDKTGRLXKYDPSTKETTLLXKELHVPGGAEVSADSSFVLVAEFLSHQI 209
Query: 177 VKHFLKVSGRTDREIFIDNLPGGPDNVNLARDGSFWISII---------KMDPKGIQ 224
           VK++L+   +   E+ +  +P  P N+    DG FW+S           ++DPKGI+
Sbjct: 210 VKYWLEGPKKGTAEVLV-KIP-NPGNIKRNADGHFWVSSSEELDGNXHGRVDPKGIK 264

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	243
2fp8_A	322	Strictosidine synthase; six bladed beta propeller	4e-57
3sre_A	355	PON1, serum paraoxonase; directed evolution, 6-bla	1e-24
1pjx_A	314	Dfpase, DIISOPROPYLFLUOROPHOSPHATASE; phosphotries	1e-23
3dr2_A	305	Exported gluconolactonase; gluconolactonase SMP-30	6e-22
3e5z_A	296	Putative gluconolactonase; X-RAY NESG Q9RXN3 gluco	5e-21
2dg1_A	333	DRP35, lactonase; beta propeller, hydrolase; 1.72A	1e-15
2p4o_A	306	Hypothetical protein; putative lactonase, structur	5e-13
2z2n_A	299	Virginiamycin B lyase; seven-bladed beta-propeller	5e-09
2z2n_A	299	Virginiamycin B lyase; seven-bladed beta-propeller	7e-06
2qc5_A	300	Streptogramin B lactonase; beta propeller, lyase;	3e-06
2qc5_A	300	Streptogramin B lactonase; beta propeller, lyase;	1e-05
2ghs_A	326	AGR_C_1268P; regucalcin, structural genomics, join	1e-05
1rwi_B	270	Serine/threonine-protein kinase PKND; beta propell	3e-05
1rwi_B	270	Serine/threonine-protein kinase PKND; beta propell	3e-05
3g4e_A	297	Regucalcin; six bladed beta-propeller, gluconolcat	9e-05
1q7f_A	286	NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL	4e-04
1q7f_A	286	NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL	4e-04

>2fp8_A Strictosidine synthase; six bladed beta propeller fold, lyase; 2.30A {Rauvolfia serpentina} PDB: 2fp9_A* 2fpc_A* 2vaq_A* 3v1s_A* 2fpb_A* 2v91_A* Length = 322

 Score =  183 bits (466), Expect = 4e-57
 Identities = 57/237 (24%), Positives = 96/237 (40%), Gaps = 26/237 (10%)

Query: 3   KLGEGIVNHPEDVSVDGNG-VLYTATGDGWIKRMH-PNGTWEDWHQVGSQSL-------- 52
            L E     P   + D      YT+  DG + +   PN  + D+                
Sbjct: 12  ILIEAPSYAPNSFTFDSTNKGFYTSVQDGRVIKYEGPNSGFVDFAYASPYWNKAFCENST 71

Query: 53  -----------LGLTTTKENNVIIVCDSQQGLLKVSEEG--VTVLVSQFNGSQLRFANDV 99
                        ++   +NN + + D    L  V  EG   T L +  +G   ++   V
Sbjct: 72  DAEKRPLCGRTYDISYNLQNNQLYIVDCYYHLSVVGSEGGHATQLATSVDGVPFKWLYAV 131

Query: 100 -IEASDGSLYFTVSSTKFTPAEYYLDLVSGEPHGVLLKYDPSTNQTSLVLDGLYFANGVA 158
            ++   G +YFT  ST +        + + +  G L+KYDPST +T+L+L  L+   G  
Sbjct: 132 TVDQRTGIVYFTDVSTLYDDRGVQQIMDTSDKTGRLIKYDPSTKETTLLLKELHVPGGAE 191

Query: 159 LSEDERFLVVCESWKFRCVKHFLKVSGRTDREIFIDNLPGGPDNVNLARDGSFWISI 215
           +S D  F++V E    + VK++L+   +   E+ +      P N+    DG FW+S 
Sbjct: 192 VSADSSFVLVAEFLSHQIVKYWLEGPKKGTAEVLVK--IPNPGNIKRNADGHFWVSS 246

>3sre_A PON1, serum paraoxonase; directed evolution, 6-blades-propeller fold, hydrolase; HET: LMT; 1.99A {Artificial gene} PDB: 1v04_A* 3srg_A* Length = 355

 Score = 99.1 bits (246), Expect = 1e-24
 Identities = 43/260 (16%), Positives = 83/260 (31%), Gaps = 38/260 (14%)

Query: 6   EGIVNHPEDVSVDGNGVLYTATGDGWIKRMH----------------PNGTWEDWHQVGS 49
           +GI N  ED+ +  NG+ + ++G  +   M                       +   +G+
Sbjct: 46  KGIDNGSEDLEILPNGLAFISSGLKYPGIMSFDPDKSGKILLMDLNEKEPAVSELEIIGN 105

Query: 50  QSLLGLTTTKENNVIIVCDSQQGLLKVS---------------EEGVTVLVSQFNGSQLR 94
              +        +  I  D+   LL V+               EE   + +       L 
Sbjct: 106 TLDISSFNPHGISTFIDDDNTVYLLVVNHPGSSSTVEVFKFQEEEKSLLHLKTIRHKLLP 165

Query: 95  FANDVIEASDGSLYFTVSSTKFTPAEYYLDLVSGEPHGVLLKYDPSTNQTSLVLDGLYFA 154
             ND++       Y T       P     ++  G     +  Y P  N   +V +G  FA
Sbjct: 166 SVNDIVAVGPEHFYATNDHYFIDPYLKSWEMHLGLAWSFVTYYSP--NDVRVVAEGFDFA 223

Query: 155 NGVALSEDERFLVVCESWKFRCVKHFLKVSGRTDREIFIDNLPGGPDNVNL-ARDGSFWI 213
           NG+ +S D +++ + E    +   +    +        +       DN+++    G  W+
Sbjct: 224 NGINISPDGKYVYIAELLAHKIHVYEKHANWTLTPLRVLS-FDTLVDNISVDPVTGDLWV 282

Query: 214 SIIKMDPKGIQALQSCKERK 233
                 P G++      E  
Sbjct: 283 GCH---PNGMRIFFYDAENP 299

>1pjx_A Dfpase, DIISOPROPYLFLUOROPHOSPHATASE; phosphotriesterase (PTE), nitrogen-calcium coordination, BET propeller; HET: ME2 MES PGE; 0.85A {Loligo vulgaris} SCOP: b.68.6.1 PDB: 1e1a_A* 2gvv_A* 2gvw_A 3byc_A 3kgg_A 3o4p_A* 3li3_A 2gvx_A 2gvu_A 3li4_A 2iaq_A 3li5_A* 2iao_A 2iap_A 2iau_A 2iax_A 2iaw_A 2ias_A 2iat_A 2iar_A ... Length = 314

 Score = 96.0 bits (239), Expect = 1e-23
 Identities = 45/247 (18%), Positives = 81/247 (32%), Gaps = 25/247 (10%)

Query: 3   KLGEGIVNHPE-DVSVDGNGVLYTATGDGWIKRMHP-NGTWEDWHQVGSQSL----LGLT 56
              EG V     D  +    V       G I R+    G      +           G  
Sbjct: 18  PGAEGPVFDKNGDFYIVAPEVEVNGKPAGEILRIDLKTGKKTVICKPEVNGYGGIPAGCQ 77

Query: 57  TTKENNVIIVCDSQQGLLKVSEEG--VTVLVSQFNGSQLRFANDVIEASDGSLYFTVSST 114
             ++ N + V D + GLL V  +G    +      G +++  ND     +G+L+ T  + 
Sbjct: 78  CDRDANQLFVADMRLGLLVVQTDGTFEEIAKKDSEGRRMQGCNDCAFDYEGNLWIT--AP 135

Query: 115 KFTPAEYYLDLVSGEPHGVLLKYDPSTNQTSLVLDGLYFANGVALSEDE----RFLVVCE 170
               A         E  G +  +     Q   V     F NG+A+          L+V E
Sbjct: 136 AGEVAPADYTRSMQEKFGSIYCFTTDG-QMIQVDTAFQFPNGIAVRHMNDGRPYQLIVAE 194

Query: 171 SWKFRCVKHFLKVSGR-TDREIFID---NLPGGPDNVNLARDGSFWIS------IIKMDP 220
           +   +   + +K   +  +++++        GG D ++   D +  ++      I    P
Sbjct: 195 TPTKKLWSYDIKGPAKIENKKVWGHIPGTHEGGADGMDFDEDNNLLVANWGSSHIEVFGP 254

Query: 221 KGIQALQ 227
            G Q   
Sbjct: 255 DGGQPKM 261

>3dr2_A Exported gluconolactonase; gluconolactonase SMP-30, six-bladed-propeller dimer, vitamin C, hydrolase; 1.67A {Xanthomonas campestris PV} Length = 305

 Score = 90.9 bits (226), Expect = 6e-22
 Identities = 41/219 (18%), Positives = 76/219 (34%), Gaps = 15/219 (6%)

Query: 3   KLGEGIVNHPEDVSVDGNGVLYTATGDGWIKRMHPNGTWEDWHQVGSQSLLGLTTTKENN 62
              EG              ++++      +     +GT +      + +  G     +  
Sbjct: 45  TWSEGPAWWE-----AQRTLVWSDLVGRRVLGWREDGTVDVLLDATAFTN-GNAVDAQQR 98

Query: 63  VIIVCDSQQGLLKVSEEG-VTVLVSQFNGSQLRFANDVIEASDGSLYFTVSSTKFTPAEY 121
           ++     ++ + +   +G   +LV ++ G +L   ND+I A DG+++FT           
Sbjct: 99  LVHCEHGRRAITRSDADGQAHLLVGRYAGKRLNSPNDLIVARDGAIWFTDPPFGLRKPSQ 158

Query: 122 YLDLVSGEPHGVLLKYDPSTNQTSLVLDGLYFANGVALSEDERFLVVCES-----WKFRC 176
                    H  + +  P  +     +  L   NG+A S DE+ L V ++          
Sbjct: 159 GCPADPELAHHSVYRLPPDGSPL-QRMADLDHPNGLAFSPDEQTLYVSQTPEQGHGSVE- 216

Query: 177 VKHFLKVSGR-TDREIFIDNLPGGPDNVNLARDGSFWIS 214
           +  F    G   DR  F     G PD   + R G  W S
Sbjct: 217 ITAFAWRDGALHDRRHFASVPDGLPDGFCVDRGGWLWSS 255

>3e5z_A Putative gluconolactonase; X-RAY NESG Q9RXN3 gluconolactonase, structural genomics, PSI protein structure initiative; 2.01A {Deinococcus radiodurans} Length = 296

 Score = 88.2 bits (219), Expect = 5e-21
 Identities = 42/231 (18%), Positives = 70/231 (30%), Gaps = 23/231 (9%)

Query: 3   KLGEGIVNHPEDVSVDGNGVLYTATGDGWIKRMHPNGTWEDWHQVGSQSLLGLTTTKENN 62
              EG V  P       + V+++            +G              G    K+ +
Sbjct: 28  TWTEGPVYVP-----ARSAVIFSDVRQNRTWAWSDDGQLSPEMHPSHHQN-GHCLNKQGH 81

Query: 63  VIIVCDSQQGLLKVSEEG--VTVLVSQFNGSQLRFANDVIEASDGSLYFTVSSTKFTPAE 120
           +I      + L +  E G     +   F G +L   NDV  A DGSL+F+  +      E
Sbjct: 82  LIACSHGLRRLERQREPGGEWESIADSFEGKKLNSPNDVCLAPDGSLWFSDPTYGIDKPE 141

Query: 121 YYLDLVSGEPHGVLLKYDPSTNQTSLVLDGLYFANGVALSEDERFLVVCES----WKFRC 176
                    P   + +  P    +   +      NG+A       LV         ++  
Sbjct: 142 EGYGGEMELPGRWVFRLAPDGTLS-APIRDRVKPNGLAFLPSGNLLVSDTGDNATHRYC- 199

Query: 177 VKHFLKVSGR-TDREIFIDNLPGGPDNVNLARDGSFWIS----IIKMDPKG 222
               L   G    + +     PG  D + +   G  W S    +  + P G
Sbjct: 200 ----LNARGETEYQGVHFTVEPGKTDGLRVDAGGLIWASAGDGVHVLTPDG 246

>2dg1_A DRP35, lactonase; beta propeller, hydrolase; 1.72A {Staphylococcus aureus} SCOP: b.68.6.1 PDB: 2dg0_A 2dso_A Length = 333

 Score = 73.6 bits (181), Expect = 1e-15
 Identities = 41/242 (16%), Positives = 80/242 (33%), Gaps = 47/242 (19%)

Query: 4   LGEGIVNHPEDVSVDGNGVLYTATGDGW-------IKRMHPNGTWEDWHQVG-SQSLLGL 55
             EG+         D  G L+              I +++P         V    +   +
Sbjct: 46  QLEGLN-------FDRQGQLF------LLDVFEGNIFKINPETKEIKRPFVSHKANPAAI 92

Query: 56  TTTKENNVIIVC----DSQQGLLKVSEEGVTVLVSQFNGSQLRFANDVIEASDGSLYFTV 111
              K+  + +       S  G+   +E G  +     + S     +D++  S G  YFT 
Sbjct: 93  KIHKDGRLFVCYLGDFKSTGGIFAATENGDNLQDIIEDLSTAYCIDDMVFDSKGGFYFT- 151

Query: 112 SSTKFTPAEYYLDLVSGEPHGVLLKYDPSTNQTSLVLDGLYFANGVALSEDERFLVVCES 171
                    Y     S  P G +    P     + ++  +  ANG+ALS DE+ L V E+
Sbjct: 152 -----DFRGY-----STNPLGGVYYVSPDFRTVTPIIQNISVANGIALSTDEKVLWVTET 201

Query: 172 -----WKFRCVKHFLKVSGRTDREIFIDNLPGGPDNVNLARDGSFWIS------IIKMDP 220
                 +       + +        +      GPD+  +  D + +++      ++  + 
Sbjct: 202 TANRLHRIALEDDGVTIQPFGATIPYYFTGHEGPDSCCIDSDDNLYVAMYGQGRVLVFNK 261

Query: 221 KG 222
           +G
Sbjct: 262 RG 263

>2p4o_A Hypothetical protein; putative lactonase, structural genomics, joint center for ST genomics, JCSG, protein structure initiative, PSI-2; HET: MSE; 1.90A {Nostoc punctiforme} SCOP: b.68.6.3 Length = 306

 Score = 66.1 bits (161), Expect = 5e-13
 Identities = 37/223 (16%), Positives = 79/223 (35%), Gaps = 26/223 (11%)

Query: 12  PEDVSVDGNGVLY-TATGDGWIKRMHPNGTWEDWHQVGSQSLLGLTTTKENNVIIVCDSQ 70
            E+++   +G ++ T    G I  + P+G  +    V  +   GL  T   +++    + 
Sbjct: 34  LENLASAPDGTIFVTNHEVGEIVSITPDGNQQIHATVEGKVS-GLAFTSNGDLVATGWNA 92

Query: 71  QGLLKVSEEG----VTVLVSQFNGSQLRFANDVIEASDGSLYFTVSSTKFTPAEYYLDLV 126
             +  VS       V  L++  +   L   N +   SD       S        + +D+V
Sbjct: 93  DSIPVVSLVKSDGTVETLLTLPDAIFL---NGITPLSDTQYLTADSYRGAI---WLIDVV 146

Query: 127 SGEPHGVLLKYDPSTNQTSLVLDGLYFANGVALSEDERFLVVCESWKFRCVKHFLKVSGR 186
                  L    P   +++       F     L     FL V  + K   ++  +  + +
Sbjct: 147 QPSGSIWLE--HPMLARSNSESV---FPAANGLKRFGNFLYVSNTEKMLLLRIPVDSTDK 201

Query: 187 T-DREIFIDNLPGGPDNVNLARDGSFWI------SIIKMDPKG 222
             + EIF++      D+     +G+ +       S++++ P  
Sbjct: 202 PGEPEIFVE--QTNIDDFAFDVEGNLYGATHIYNSVVRIAPDR 242

>2z2n_A Virginiamycin B lyase; seven-bladed beta-propeller, antibiotic resistance, E mechanism, virginiamycin B hydrolase streptogramin; HET: MSE; 1.65A {Staphylococcus aureus} PDB: 2z2o_A 2z2p_A* Length = 299

 Score = 54.3 bits (131), Expect = 5e-09
 Identities = 27/222 (12%), Positives = 68/222 (30%), Gaps = 32/222 (14%)

Query: 10  NHPEDVSVDGNGVLY-TATGDGWIKRMHPNGTWEDWHQVGSQSL-LGLTTTKENNVIIVC 67
                +++  +G ++ T      I R+   G  +++      S   G+T     ++    
Sbjct: 57  AKVMCLTISSDGEVWFTENAANKIGRITKKGIIKEYTLPNPDSAPYGITEGPNGDIWFTE 116

Query: 68  DSQQGLLKVSEEGVTVLVSQFNGSQLRFANDVIEASDGSLYFTVSSTKFTPAEYYLDLVS 127
            +   + +++++G          ++  + + +   SD +L+FT +               
Sbjct: 117 MNGNRIGRITDDGKIREYE--LPNKGSYPSFITLGSDNALWFTENQN------------- 161

Query: 128 GEPHGVLLKYDPSTNQTSLVLDG-LYFANGVALSEDERFLVVCESWKFRCVKHFLKVSGR 186
                 + +   S + T   +        G+    D+  L   E    +  +  +  SG 
Sbjct: 162 ----NAIGRITESGDITEFKIPTPASGPVGITKGNDDA-LWFVEIIGNKIGR--ITTSGE 214

Query: 187 TDREIFIDNLPGGPDNVNLARDGSFWIS------IIKMDPKG 222
              E  I      P  +        W +      I ++    
Sbjct: 215 I-TEFKIPTPNARPHAITAGAGIDLWFTEWGANKIGRLTSNN 255

>2z2n_A Virginiamycin B lyase; seven-bladed beta-propeller, antibiotic resistance, E mechanism, virginiamycin B hydrolase streptogramin; HET: MSE; 1.65A {Staphylococcus aureus} PDB: 2z2o_A 2z2p_A* Length = 299

 Score = 45.0 bits (107), Expect = 7e-06
 Identities = 17/167 (10%), Positives = 45/167 (26%), Gaps = 22/167 (13%)

Query: 5   GEGIVNHPEDVSVDGNGVLY-TATGDGWIKRMHPNGTWEDWHQVGSQSL-LGLTTTKENN 62
                + P  ++   NG ++ T      I R+  +G   ++      S    +T   +N 
Sbjct: 94  LPNPDSAPYGITEGPNGDIWFTEMNGNRIGRITDDGKIREYELPNKGSYPSFITLGSDNA 153

Query: 63  VIIVCDSQQGLLKVSEEGVTVLVSQFNGSQLRFANDVIEASDGSLYFTVSSTKFTPAEYY 122
           +    +    + +++E G          +       + + +D +L+F             
Sbjct: 154 LWFTENQNNAIGRITESGDITEFK--IPTPASGPVGITKGNDDALWFVEIIG-------- 203

Query: 123 LDLVSGEPHGVLLKYDPSTNQTSLVL-DGLYFANGVALSEDERFLVV 168
                      + +   S   T   +       + +           
Sbjct: 204 ---------NKIGRITTSGEITEFKIPTPNARPHAITAGAGIDLWFT 241

>2qc5_A Streptogramin B lactonase; beta propeller, lyase; 1.80A {Staphylococcus cohnii} Length = 300

 Score = 46.2 bits (110), Expect = 3e-06
 Identities = 21/139 (15%), Positives = 52/139 (37%), Gaps = 12/139 (8%)

Query: 5   GEGIVNHPEDVSVDGNGVLY-TATGDGWIKRMHPNGTWEDW-HQVGSQSLLGLTTTKENN 62
                ++P  +++  +  L+ T   +  I R+   G  E++     + + +G+T+  +  
Sbjct: 141 LPNKGSYPAFITLGSDNALWFTENQNNSIGRITNTGKLEEYPLPTNAAAPVGITSGNDGA 200

Query: 63  VIIVCDSQQGLLKVSEEGVTVLVSQFNGSQLRFANDVIEASDGSLYFTVSST----KFTP 118
           +  V      + +++  G          +     + +    +  ++FT        + T 
Sbjct: 201 LWFVEIMGNKIGRITTTGEISEYDI--PTPNARPHAITAGKNSEIWFTEWGANQIGRITN 258

Query: 119 A----EYYLDLVSGEPHGV 133
                EY L   + EPHG+
Sbjct: 259 DNTIQEYQLQTENAEPHGI 277

>2qc5_A Streptogramin B lactonase; beta propeller, lyase; 1.80A {Staphylococcus cohnii} Length = 300

 Score = 44.2 bits (105), Expect = 1e-05
 Identities = 27/205 (13%), Positives = 55/205 (26%), Gaps = 46/205 (22%)

Query: 54  GLTTTKENNVIIVCDSQQGLLKVSEEGVTVLVSQFNGSQLRFANDVIEASDGSLYFTVSS 113
           G+T++++  V         +  + + G          +       +I +S G ++FT + 
Sbjct: 24  GITSSEDGKVWFTQHKANKISSLDQSGRIKEFE--VPTPDAKVMCLIVSSLGDIWFTENG 81

Query: 114 T----KFTPA----EYYLDLVSGEPHGV-----------------LLKYDPSTNQTSLVL 148
                K +      EY L      P+G+                 + K           L
Sbjct: 82  ANKIGKLSKKGGFTEYPLPQPDSGPYGITEGLNGDIWFTQLNGDRIGKLTADGTIYEYDL 141

Query: 149 DG-LYFANGVALSEDERFLVVCES----WKFRCVKHFLKVSGRTDREIFIDNLPGGPDNV 203
                +   + L  D              +          +G+   E  +      P  +
Sbjct: 142 PNKGSYPAFITLGSDNALWFTENQNNSIGRIT-------NTGKL-EEYPLPTNAAAPVGI 193

Query: 204 NLARDGSFWIS------IIKMDPKG 222
               DG+ W        I ++   G
Sbjct: 194 TSGNDGALWFVEIMGNKIGRITTTG 218

>2ghs_A AGR_C_1268P; regucalcin, structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PSI-2; 1.55A {Agrobacterium tumefaciens str} SCOP: b.68.6.1 Length = 326

 Score = 44.2 bits (105), Expect = 1e-05
 Identities = 37/245 (15%), Positives = 70/245 (28%), Gaps = 58/245 (23%)

Query: 3   KLGEGIVNHPEDVSVDGNGVLYTATGDGW-------IKRMHP-NGTWEDWH---QVGSQS 51
            LGEG    P        G  +      W       +  +H  +G            + +
Sbjct: 49  LLGEGPTFDPAS------GTAW------WFNILERELHELHLASGRKTVHALPFMGSALA 96

Query: 52  LLGLTTTKENNVIIVCDSQQGLLKVSEEGVTVLVS-QFNGSQLRFANDVIEASDGSLYFT 110
                   ++  +I  D    L   +   +T+    + +    R  ND      G+L+  
Sbjct: 97  K-----ISDSKQLIASDDGLFLRDTATGVLTLHAELESDLPGNRS-NDGRMHPSGALWI- 149

Query: 111 VSSTKFTPAEYYLDLVSGEPHGVLLKYDPSTNQTSLVLDGLYFANGVALSEDERFLVVCE 170
              T    AE           G +        + + +   +   N +  S D       +
Sbjct: 150 --GTMGRKAE--------TGAGSIYHVAK--GKVTKLFADISIPNSICFSPDGTTGYFVD 197

Query: 171 S-----WKFRCVKHFLKVSGRTDREIFID--NLPGGPDNVNLARDGSFWI------SIIK 217
           +      +          +G+   E+FID   + GG D      +G  W       ++ +
Sbjct: 198 TKVNRLMRVPLDARTGLPTGK--AEVFIDSTGIKGGMDGSVCDAEGHIWNARWGEGAVDR 255

Query: 218 MDPKG 222
            D  G
Sbjct: 256 YDTDG 260

>1rwi_B Serine/threonine-protein kinase PKND; beta propeller, structural genomics, PSI, protein structure initiative; 1.80A {Mycobacterium tuberculosis} SCOP: b.68.9.1 PDB: 1rwl_A Length = 270

 Score = 43.0 bits (102), Expect = 3e-05
 Identities = 21/130 (16%), Positives = 46/130 (35%), Gaps = 14/130 (10%)

Query: 3   KLGEGIVNHPEDVSVDGNGVLYTA-TGDGWIKRMHPNGTWEDWHQVGSQSL---LGLTTT 58
            L    +N P+ V+VD +G +Y   T +  + ++      +    +    +    G+   
Sbjct: 143 VLPFTGLNDPDGVAVDNSGNVYVTDTDNNRVVKLEAESNNQ--VVLPFTDITAPWGIAVD 200

Query: 59  KENNVIIVCDSQQG-LLKVSEEGVTVLVSQFNGSQLRFANDVIEASDGSLYFTVSS---- 113
           +    + V +     ++K+     T   +    + L     V   SD ++Y         
Sbjct: 201 EAGT-VYVTEHNTNQVVKLLAGSTT--STVLPFTGLNTPLAVAVDSDRTVYVADRGNDRV 257

Query: 114 TKFTPAEYYL 123
            K T  E++ 
Sbjct: 258 VKLTSLEHHH 267

>1rwi_B Serine/threonine-protein kinase PKND; beta propeller, structural genomics, PSI, protein structure initiative; 1.80A {Mycobacterium tuberculosis} SCOP: b.68.9.1 PDB: 1rwl_A Length = 270

 Score = 43.0 bits (102), Expect = 3e-05
 Identities = 29/198 (14%), Positives = 59/198 (29%), Gaps = 30/198 (15%)

Query: 5   GEGIVNHPEDVSVDGNGVLYTA-TGDGWIKRMHPNGTWEDWHQVGSQSLLGLTTTKENNV 63
               +  P+ ++VDG G +Y     +  +     +         G     GL    +  V
Sbjct: 62  PFNGLYQPQGLAVDGAGTVYVTDFNNRVVTLAAGSNNQTVLPFDGLNYPEGLAVDTQGAV 121

Query: 64  IIVCDSQQGLLKVSEEGVTVLVSQFNGSQLRFANDVIEASDGSLYFTVSST----KFTPA 119
            +       ++K++        +    + L   + V   + G++Y T +      K    
Sbjct: 122 YVADRGNNRVVKLAAGS--KTQTVLPFTGLNDPDGVAVDNSGNVYVTDTDNNRVVKLEAE 179

Query: 120 EYYLDLVSG----EPHGV-----------------LLKYDPSTN-QTSLVLDGLYFANGV 157
                ++       P G+                 ++K    +   T L   GL     V
Sbjct: 180 SNNQVVLPFTDITAPWGIAVDEAGTVYVTEHNTNQVVKLLAGSTTSTVLPFTGLNTPLAV 239

Query: 158 ALSEDERFLVVCESWKFR 175
           A+  D   + V +    R
Sbjct: 240 AVDSDRT-VYVADRGNDR 256

>3g4e_A Regucalcin; six bladed beta-propeller, gluconolcatonase, organophosphate hydrolase, calcium bound, alternative splicing, cytoplasm, phosphoprotein; 1.42A {Homo sapiens} PDB: 3g4h_B Length = 297

 Score = 41.9 bits (99), Expect = 9e-05
 Identities = 39/241 (16%), Positives = 71/241 (29%), Gaps = 47/241 (19%)

Query: 3   KLGEGIVNHPEDVSVDGNGVLYTATGDGW-------IKRMHP-NGTWEDWH---QVGSQS 51
           + GE  V             L       +       + R        +       V S +
Sbjct: 13  RCGESPVWEEVS------NSLL------FVDIPAKKVCRWDSFTKQVQRVTMDAPVSSVA 60

Query: 52  LLGLTTTKENNVIIVCDSQQGLLKVSEEGVTVLVS-QFNGSQLRFANDVIEASDGSLYFT 110
           L      +    +    ++   L   E+   VL +   +    RF ND      G  +  
Sbjct: 61  L-----RQSGGYVATIGTKFCALNWKEQSAVVLATVDNDKKNNRF-NDGKVDPAGRYFAG 114

Query: 111 VSSTKFTPAEYYLDLVSGEPHGVLLKYDPSTNQTSLVLDGLYFANGVALSEDERFLVVCE 170
                 T AE     V     G L    P  +      D +  +NG+  S D +     +
Sbjct: 115 ------TMAEETAPAVLERHQGALYSLFP-DHHVKKYFDQVDISNGLDWSLDHKIFYYID 167

Query: 171 SWKFRCVKH-FLKVSGR-TDREIFID--NLPGGPDNVNLARDGSFWI------SIIKMDP 220
           S  +      +   +G+ ++R            PD + +  +G  W+       +I++DP
Sbjct: 168 SLSYSVDAFDYDLQTGQISNRRSVYKLEKEEQIPDGMCIDAEGKLWVACYNGGRVIRLDP 227

Query: 221 K 221
            
Sbjct: 228 V 228

>1q7f_A NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL repeat, beta-propeller, translation; 1.95A {Drosophila melanogaster} SCOP: b.68.9.1 Length = 286

 Score = 39.9 bits (94), Expect = 4e-04
 Identities = 26/143 (18%), Positives = 50/143 (34%), Gaps = 16/143 (11%)

Query: 5   GEGIVNHPEDVSVDGNGVLYTATGDGWIKRMH---PNGTW-EDWHQVGSQSLLGLTTTKE 60
            +  + +P  V+V  N      T      ++      G +   +     Q   G+T   +
Sbjct: 72  RDSQLLYPNRVAVVRNSGDIIVTERSPTHQIQIYNQYGQFVRKFGATILQHPRGVTVDNK 131

Query: 61  NNVIIVCDSQQGLLKVSEEGVTVLVSQFNGS-QLRFANDVIEASDGSLYFTVSST----K 115
             +I+V      ++   + G   ++ +F  S  L F N V+      ++ + +       
Sbjct: 132 GRIIVVECKVMRVIIFDQNG--NVLHKFGCSKHLEFPNGVVVNDKQEIFISDNRAHCVKV 189

Query: 116 FTPAEYYLDLVSGE-----PHGV 133
           F     YL  + GE     P GV
Sbjct: 190 FNYEGQYLRQIGGEGITNYPIGV 212

>1q7f_A NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL repeat, beta-propeller, translation; 1.95A {Drosophila melanogaster} SCOP: b.68.9.1 Length = 286

 Score = 39.9 bits (94), Expect = 4e-04
 Identities = 26/113 (23%), Positives = 42/113 (37%), Gaps = 12/113 (10%)

Query: 3   KLGEGIVNHPEDVSVDGNGVLY-TATGDGWIKRMHPNGTWEDWHQVGSQSLL----GLTT 57
           K G  I+ HP  V+VD  G +         +     NG     H+ G    L    G+  
Sbjct: 114 KFGATILQHPRGVTVDNKGRIIVVECKVMRVIIFDQNGNV--LHKFGCSKHLEFPNGVVV 171

Query: 58  TKENNVIIVCDSQQGLLKV-SEEGVTVLVSQFNGS-QLRFANDVIEASDGSLY 108
             +   I + D++   +KV + EG    + Q  G     +   V   S+G + 
Sbjct: 172 NDKQE-IFISDNRAHCVKVFNYEG--QYLRQIGGEGITNYPIGVGINSNGEIL 221

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	243
2fp8_A	322	Strictosidine synthase; six bladed beta propeller	99.94
3dr2_A	305	Exported gluconolactonase; gluconolactonase SMP-30	99.93
3g4e_A	297	Regucalcin; six bladed beta-propeller, gluconolcat	99.91
3e5z_A	296	Putative gluconolactonase; X-RAY NESG Q9RXN3 gluco	99.91
3sre_A	355	PON1, serum paraoxonase; directed evolution, 6-bla	99.91
1pjx_A	314	Dfpase, DIISOPROPYLFLUOROPHOSPHATASE; phosphotries	99.88
2p4o_A	306	Hypothetical protein; putative lactonase, structur	99.86
2ghs_A	326	AGR_C_1268P; regucalcin, structural genomics, join	99.86
2dg1_A	333	DRP35, lactonase; beta propeller, hydrolase; 1.72A	99.84
1q7f_A	286	NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL	99.82
4hw6_A	433	Hypothetical protein, IPT/TIG domain protein; puta	99.82
1rwi_B	270	Serine/threonine-protein kinase PKND; beta propell	99.82
1rwi_B	270	Serine/threonine-protein kinase PKND; beta propell	99.81
2qc5_A	300	Streptogramin B lactonase; beta propeller, lyase;	99.81
3hrp_A	409	Uncharacterized protein; NP_812590.1, structural g	99.81
2z2n_A	299	Virginiamycin B lyase; seven-bladed beta-propeller	99.8
2qc5_A	300	Streptogramin B lactonase; beta propeller, lyase;	99.8
1q7f_A	286	NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL	99.79
3tc9_A	430	Hypothetical hydrolase; 6-bladed beta-propeller, i	99.79
2z2n_A	299	Virginiamycin B lyase; seven-bladed beta-propeller	99.79
3v64_C	349	Agrin; beta propeller, laminin-G, signaling, prote	99.79
3v65_B	386	Low-density lipoprotein receptor-related protein;	99.78
2qe8_A	343	Uncharacterized protein; structural genomics, join	99.78
3fvz_A	329	Peptidyl-glycine alpha-amidating monooxygenase; be	99.77
1npe_A	267	Nidogen, entactin; glycoprotein, basement membrane	99.77
3dsm_A	328	Uncharacterized protein bacuni_02894; seven_blated	99.76
3sov_A	318	LRP-6, low-density lipoprotein receptor-related pr	99.76
1ijq_A	316	LDL receptor, low-density lipoprotein receptor; be	99.76
4a0p_A	628	LRP6, LRP-6, low-density lipoprotein receptor-rela	99.73
3p5b_L	400	Low density lipoprotein receptor variant; B-propel	99.73
2ism_A	352	Putative oxidoreductase; BL41XU spring-8, bladed b	99.72
3a9g_A	354	Putative uncharacterized protein; PQQ dependent de	99.72
3hrp_A	409	Uncharacterized protein; NP_812590.1, structural g	99.71
3s94_A	619	LRP-6, low-density lipoprotein receptor-related pr	99.71
2fp8_A	322	Strictosidine synthase; six bladed beta propeller	99.69
3s94_A	619	LRP-6, low-density lipoprotein receptor-related pr	99.69
3kya_A	496	Putative phosphatase; structural genomics, joint c	99.68
1pjx_A	314	Dfpase, DIISOPROPYLFLUOROPHOSPHATASE; phosphotries	99.68
3fvz_A	329	Peptidyl-glycine alpha-amidating monooxygenase; be	99.68
1npe_A	267	Nidogen, entactin; glycoprotein, basement membrane	99.68
4a2l_A	795	BT_4663, two-component system sensor histidine kin	99.67
3m0c_C	791	LDL receptor, low-density lipoprotein receptor; pr	99.67
3g4e_A	297	Regucalcin; six bladed beta-propeller, gluconolcat	99.66
3das_A	347	Putative oxidoreductase; aldose sugar dehydrogenas	99.66
4a0p_A	628	LRP6, LRP-6, low-density lipoprotein receptor-rela	99.66
4hw6_A	433	Hypothetical protein, IPT/TIG domain protein; puta	99.65
2g8s_A	353	Glucose/sorbosone dehydrogenases; bladed beta-prop	99.65
3vgz_A	353	Uncharacterized protein YNCE; beta-propeller, prot	99.64
3v9f_A	781	Two-component system sensor histidine kinase/RESP	99.63
3v9f_A	781	Two-component system sensor histidine kinase/RESP	99.63
3e5z_A	296	Putative gluconolactonase; X-RAY NESG Q9RXN3 gluco	99.63
3dsm_A	328	Uncharacterized protein bacuni_02894; seven_blated	99.63
3hfq_A	347	Uncharacterized protein LP_2219; Q88V64_lacpl, NES	99.63
1n7d_A	699	LDL receptor, low-density lipoprotein receptor; fa	99.62
2qe8_A	343	Uncharacterized protein; structural genomics, join	99.62
4a2l_A	795	BT_4663, two-component system sensor histidine kin	99.61
2dg1_A	333	DRP35, lactonase; beta propeller, hydrolase; 1.72A	99.61
3tc9_A	430	Hypothetical hydrolase; 6-bladed beta-propeller, i	99.61
3v64_C	349	Agrin; beta propeller, laminin-G, signaling, prote	99.61
3hxj_A	330	Pyrrolo-quinoline quinone; all beta protein. incom	99.6
3hfq_A	347	Uncharacterized protein LP_2219; Q88V64_lacpl, NES	99.6
2p9w_A	334	MAL S 1 allergenic protein; beta propeller; 1.35A	99.6
3sov_A	318	LRP-6, low-density lipoprotein receptor-related pr	99.59
3dr2_A	305	Exported gluconolactonase; gluconolactonase SMP-30	99.59
3v65_B	386	Low-density lipoprotein receptor-related protein;	99.58
1ijq_A	316	LDL receptor, low-density lipoprotein receptor; be	99.56
2ghs_A	326	AGR_C_1268P; regucalcin, structural genomics, join	99.55
3vgz_A	353	Uncharacterized protein YNCE; beta-propeller, prot	99.55
3ott_A	758	Two-component system sensor histidine kinase; beta	99.53
2iwa_A	266	Glutamine cyclotransferase; pyroglutamate, acyltra	99.52
3kya_A	496	Putative phosphatase; structural genomics, joint c	99.52
3qqz_A	255	Putative uncharacterized protein YJIK; MCSG, PSI-2	99.52
3p5b_L	400	Low density lipoprotein receptor variant; B-propel	99.51
3u4y_A	331	Uncharacterized protein; structural genomics, PSI-	99.51
3u4y_A	331	Uncharacterized protein; structural genomics, PSI-	99.5
2p4o_A	306	Hypothetical protein; putative lactonase, structur	99.49
3a9g_A	354	Putative uncharacterized protein; PQQ dependent de	99.49
3m0c_C	791	LDL receptor, low-density lipoprotein receptor; pr	99.46
3hxj_A	330	Pyrrolo-quinoline quinone; all beta protein. incom	99.46
1cru_A	454	Protein (soluble quinoprotein glucose dehydrogena;	99.45
1jof_A	365	Carboxy-CIS,CIS-muconate cyclase; beta-propeller,	99.45
3no2_A	276	Uncharacterized protein; six-bladed beta-propeller	99.44
2iwa_A	266	Glutamine cyclotransferase; pyroglutamate, acyltra	99.43
1ri6_A	343	Putative isomerase YBHE; 7-bladed propeller, enzym	99.43
3ott_A	758	Two-component system sensor histidine kinase; beta	99.41
3scy_A	361	Hypothetical bacterial 6-phosphogluconolactonase;	99.4
1n7d_A	699	LDL receptor, low-density lipoprotein receptor; fa	99.38
1l0q_A	391	Surface layer protein; SLP, S-layer, 7-bladed beta	99.37
1jof_A	365	Carboxy-CIS,CIS-muconate cyclase; beta-propeller,	99.36
3nol_A	262	Glutamine cyclotransferase; beta-propeller, glutam	99.35
1ri6_A	343	Putative isomerase YBHE; 7-bladed propeller, enzym	99.33
3scy_A	361	Hypothetical bacterial 6-phosphogluconolactonase;	99.32
1l0q_A	391	Surface layer protein; SLP, S-layer, 7-bladed beta	99.31
1jmx_B	349	Amine dehydrogenase; oxidoreductase; HET: TRQ HEC;	99.3
1pby_B	337	Quinohemoprotein amine dehydrogenase 40 kDa subuni	99.29
3mbr_X	243	Glutamine cyclotransferase; beta-propeller; 1.44A	99.28
3nok_A	268	Glutaminyl cyclase; beta-propeller, cyclotransfera	99.28
2ism_A	352	Putative oxidoreductase; BL41XU spring-8, bladed b	99.28
1nir_A	543	Nitrite reductase; hemoprotein, denitrification, d	99.26
3bws_A	433	Protein LP49; two-domain, immunoglobulin-like, 7-b	99.25
2ece_A	462	462AA long hypothetical selenium-binding protein;	99.25
3nok_A	268	Glutaminyl cyclase; beta-propeller, cyclotransfera	99.24
3nol_A	262	Glutamine cyclotransferase; beta-propeller, glutam	99.23
1nir_A	543	Nitrite reductase; hemoprotein, denitrification, d	99.23
3c75_H	426	MADH, methylamine dehydrogenase heavy chain; coppe	99.22
3das_A	347	Putative oxidoreductase; aldose sugar dehydrogenas	99.2
3bws_A	433	Protein LP49; two-domain, immunoglobulin-like, 7-b	99.18
3mbr_X	243	Glutamine cyclotransferase; beta-propeller; 1.44A	99.16
2oiz_A	361	Aromatic amine dehydrogenase, large subunit; oxido	99.13
1cru_A	454	Protein (soluble quinoprotein glucose dehydrogena;	99.13
1qks_A	567	Cytochrome CD1 nitrite reductase; enzyme, oxidored	99.13
3no2_A	276	Uncharacterized protein; six-bladed beta-propeller	99.13
1qks_A	567	Cytochrome CD1 nitrite reductase; enzyme, oxidored	99.1
2wg3_C	463	Hedgehog-interacting protein; lipoprotein, develop	99.08
2p9w_A	334	MAL S 1 allergenic protein; beta propeller; 1.35A	99.07
1pby_B	337	Quinohemoprotein amine dehydrogenase 40 kDa subuni	99.07
2hqs_A	415	Protein TOLB; TOLB, PAL, TOL, transport protein-li	99.07
2g8s_A	353	Glucose/sorbosone dehydrogenases; bladed beta-prop	99.07
3qqz_A	255	Putative uncharacterized protein YJIK; MCSG, PSI-2	99.05
2mad_H	373	Methylamine dehydrogenase (heavy subunit); oxidore	99.04
2oiz_A	361	Aromatic amine dehydrogenase, large subunit; oxido	99.0
3sjl_D	386	Methylamine dehydrogenase heavy chain; MAUG, C-hem	99.0
3sre_A	355	PON1, serum paraoxonase; directed evolution, 6-bla	98.99
3ow8_A	321	WD repeat-containing protein 61; structural genomi	98.99
1gxr_A	337	ESG1, transducin-like enhancer protein 1; transcri	98.98
2ece_A	462	462AA long hypothetical selenium-binding protein;	98.98
4h5i_A	365	Guanine nucleotide-exchange factor SEC12; copii ve	98.97
1mda_H	368	Methylamine dehydrogenase (heavy subunit); electro	98.96
3ow8_A	321	WD repeat-containing protein 61; structural genomi	98.95
1gxr_A	337	ESG1, transducin-like enhancer protein 1; transcri	98.95
2ymu_A	577	WD-40 repeat protein; unknown function, two domain	98.93
1fwx_A	595	Nitrous oxide reductase; beta-propeller domain, cu	98.91
1jmx_B	349	Amine dehydrogenase; oxidoreductase; HET: TRQ HEC;	98.91
2ojh_A	297	Uncharacterized protein ATU1656/AGR_C_3050; TOLB,	98.91
4ery_A	312	WD repeat-containing protein 5; WD40, WIN motif, b	98.89
2ojh_A	297	Uncharacterized protein ATU1656/AGR_C_3050; TOLB,	98.88
2ymu_A	577	WD-40 repeat protein; unknown function, two domain	98.87
2hqs_A	415	Protein TOLB; TOLB, PAL, TOL, transport protein-li	98.86
3ei3_B	383	DNA damage-binding protein 2; UV-damage, DDB, nucl	98.86
1got_B	340	GT-beta; complex (GTP-binding/transducer), G prote	98.86
2z3z_A	706	Dipeptidyl aminopeptidase IV; peptidase family S9,	98.85
3o4h_A	582	Acylamino-acid-releasing enzyme; alpha/beta hydrol	98.84
3fm0_A	345	Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD r	98.81
1fwx_A	595	Nitrous oxide reductase; beta-propeller domain, cu	98.81
2aq5_A	402	Coronin-1A; WD40 repeat, 7-bladed beta-propeller,	98.8
3q6k_A	381	43.2 kDa salivary protein; beta propeller, binding	98.79
1k8k_C	372	P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta-	98.78
4e54_B	435	DNA damage-binding protein 2; beta barrel, double	98.77
1got_B	340	GT-beta; complex (GTP-binding/transducer), G prote	98.75
3sjl_D	386	Methylamine dehydrogenase heavy chain; MAUG, C-hem	98.75
1k8k_C	372	P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta-	98.75
3zwl_B	369	Eukaryotic translation initiation factor 3 subuni;	98.74
4gqb_B	344	Methylosome protein 50; TIM barrel, beta-propeller	98.73
3q6k_A	381	43.2 kDa salivary protein; beta propeller, binding	98.73
4a9v_A	592	PHOX; hydrolase, beta-propeller; 1.10A {Pseudomona	98.72
1r5m_A	425	SIR4-interacting protein SIF2; transcription corep	98.71
1erj_A	393	Transcriptional repressor TUP1; beta-propeller, tr	98.7
3c75_H	426	MADH, methylamine dehydrogenase heavy chain; coppe	98.7
2xzm_R	343	RACK1; ribosome, translation; 3.93A {Tetrahymena t	98.7
3zwl_B	369	Eukaryotic translation initiation factor 3 subuni;	98.69
4aez_A	401	CDC20, WD repeat-containing protein SLP1; cell cyc	98.69
1r5m_A	425	SIR4-interacting protein SIF2; transcription corep	98.69
3pe7_A	388	Oligogalacturonate lyase; seven-bladed beta-propel	98.69
2vdu_B	450	TRNA (guanine-N(7)-)-methyltransferase- associated	98.68
3vl1_A	420	26S proteasome regulatory subunit RPN14; beta-prop	98.67
4gqb_B	344	Methylosome protein 50; TIM barrel, beta-propeller	98.67
1erj_A	393	Transcriptional repressor TUP1; beta-propeller, tr	98.66
2aq5_A	402	Coronin-1A; WD40 repeat, 7-bladed beta-propeller,	98.65
2pbi_B	354	Guanine nucleotide-binding protein subunit beta 5;	98.63
2vdu_B	450	TRNA (guanine-N(7)-)-methyltransferase- associated	98.63
1nr0_A	611	Actin interacting protein 1; beta propeller, WD40	98.63
2z3z_A	706	Dipeptidyl aminopeptidase IV; peptidase family S9,	98.62
2pm9_A	416	Protein WEB1, protein transport protein SEC31; bet	98.61
4g56_B	357	MGC81050 protein; protein arginine methyltransfera	98.6
4h5i_A	365	Guanine nucleotide-exchange factor SEC12; copii ve	98.6
1pgu_A	615	Actin interacting protein 1; WD repeat, seven-blad	98.59
3jrp_A	379	Fusion protein of protein transport protein SEC13	98.58
1mda_H	368	Methylamine dehydrogenase (heavy subunit); electro	98.57
2ecf_A	741	Dipeptidyl peptidase IV; prolyl oligopeptidase fam	98.57
3dwl_C	377	Actin-related protein 2/3 complex subunit 1; prope	98.57
1xfd_A	723	DIP, dipeptidyl aminopeptidase-like protein 6, dip	98.57
2ynn_A	304	Coatomer subunit beta'; protein transport, peptide	98.56
2ecf_A	741	Dipeptidyl peptidase IV; prolyl oligopeptidase fam	98.56
3dwl_C	377	Actin-related protein 2/3 complex subunit 1; prope	98.56
4g56_B	357	MGC81050 protein; protein arginine methyltransfera	98.56
3mkq_A	814	Coatomer beta'-subunit; beta-propeller, alpha-sole	98.54
4ery_A	312	WD repeat-containing protein 5; WD40, WIN motif, b	98.53
1sq9_A	397	Antiviral protein SKI8; WD repeat, beta-transducin	98.53
3i2n_A	357	WD repeat-containing protein 92; WD40 repeats, str	98.53
3o4h_A	582	Acylamino-acid-releasing enzyme; alpha/beta hydrol	98.52
3fm0_A	345	Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD r	98.52
2mad_H	373	Methylamine dehydrogenase (heavy subunit); oxidore	98.51
1vyh_C	410	Platelet-activating factor acetylhydrolase IB alph	98.51
1tl2_A	236	L10, protein (tachylectin-2); animal lectin, horse	98.51
1sq9_A	397	Antiviral protein SKI8; WD repeat, beta-transducin	98.51
1vyh_C	410	Platelet-activating factor acetylhydrolase IB alph	98.5
3dm0_A	694	Maltose-binding periplasmic protein fused with RAC	98.5
3lrv_A	343	PRE-mRNA-splicing factor 19; PRP19, WD40, E3 ubiqu	98.49
3frx_A	319	Guanine nucleotide-binding protein subunit beta- l	98.48
1k32_A	1045	Tricorn protease; protein degradation, substrate g	98.48
1nr0_A	611	Actin interacting protein 1; beta propeller, WD40	98.48
3pe7_A	388	Oligogalacturonate lyase; seven-bladed beta-propel	98.47
3iz6_a	380	40S ribosomal protein RACK1 (RACK1); eukaryotic ri	98.46
3b7f_A	394	Glycosyl hydrolase, BNR repeat; 7-bladed beta-prop	98.46
3jrp_A	379	Fusion protein of protein transport protein SEC13	98.45
3odt_A	313	Protein DOA1; ubiquitin, nuclear protein; HET: MSE	98.45
3k26_A	366	Polycomb protein EED; WD40, structural genomics, N	98.45
3dw8_B	447	Serine/threonine-protein phosphatase 2A 55 kDa RE	98.44
2xyi_A	430	Probable histone-binding protein CAF1; transcripti	98.44
1pgu_A	615	Actin interacting protein 1; WD repeat, seven-blad	98.43
3azo_A	662	Aminopeptidase; POP family, hydrolase; 2.00A {Stre	98.43
3azo_A	662	Aminopeptidase; POP family, hydrolase; 2.00A {Stre	98.42
3f3f_A	351	Nucleoporin SEH1; structural protein, protein comp	98.42
3iz6_a	380	40S ribosomal protein RACK1 (RACK1); eukaryotic ri	98.42
1z68_A	719	Fibroblast activation protein, alpha subunit; sepr	98.41
2xyi_A	430	Probable histone-binding protein CAF1; transcripti	98.4
3vl1_A	420	26S proteasome regulatory subunit RPN14; beta-prop	98.39
3frx_A	319	Guanine nucleotide-binding protein subunit beta- l	98.38
3mkq_A	814	Coatomer beta'-subunit; beta-propeller, alpha-sole	98.37
3q7m_A	376	Lipoprotein YFGL, BAMB; beta-propeller, BAM comple	98.36
4aez_A	401	CDC20, WD repeat-containing protein SLP1; cell cyc	98.36
3q7m_A	376	Lipoprotein YFGL, BAMB; beta-propeller, BAM comple	98.35
3dw8_B	447	Serine/threonine-protein phosphatase 2A 55 kDa RE	98.35
3b7f_A	394	Glycosyl hydrolase, BNR repeat; 7-bladed beta-prop	98.35
3jro_A	753	Fusion protein of protein transport protein SEC13	98.34
3amr_A	355	3-phytase; beta-propeller, phytate, MYO-inositol h	98.34
1xfd_A	723	DIP, dipeptidyl aminopeptidase-like protein 6, dip	98.32
3mmy_A	368	MRNA export factor; mRNA export, nuclear protein;	98.32
3i2n_A	357	WD repeat-containing protein 92; WD40 repeats, str	98.3
2hes_X	330	YDR267CP; beta-propeller, WD40 repeat, biosyntheti	98.3
3ei3_B	383	DNA damage-binding protein 2; UV-damage, DDB, nucl	98.3
2j04_A	588	TAU60, YPL007P, hypothetical protein YPL007C; beta	98.3
4a11_B	408	DNA excision repair protein ERCC-8; DNA binding pr	98.28
1yfq_A	342	Cell cycle arrest protein BUB3; WD repeat WD40 rep	98.28
2hes_X	330	YDR267CP; beta-propeller, WD40 repeat, biosyntheti	98.28
2oaj_A	902	Protein SNI1; WD40 repeat, beta propeller, endocyt	98.28
2ynn_A	304	Coatomer subunit beta'; protein transport, peptide	98.28
2pm9_A	416	Protein WEB1, protein transport protein SEC31; bet	98.27
2j04_A	588	TAU60, YPL007P, hypothetical protein YPL007C; beta	98.26
3s25_A	302	Hypothetical 7-bladed beta-propeller-like protein;	98.25
3sfz_A	1249	APAF-1, apoptotic peptidase activating factor 1; a	98.25
1k32_A	1045	Tricorn protease; protein degradation, substrate g	98.24
3sfz_A	1249	APAF-1, apoptotic peptidase activating factor 1; a	98.24
3lrv_A	343	PRE-mRNA-splicing factor 19; PRP19, WD40, E3 ubiqu	98.23
2pbi_B	354	Guanine nucleotide-binding protein subunit beta 5;	98.21
1yfq_A	342	Cell cycle arrest protein BUB3; WD repeat WD40 rep	98.21
3odt_A	313	Protein DOA1; ubiquitin, nuclear protein; HET: MSE	98.2
2pm7_B	297	Protein transport protein SEC13, protein transport	98.2
2xdw_A	710	Prolyl endopeptidase; alpha/beta-hydrolase, amnesi	98.19
4aow_A	340	Guanine nucleotide-binding protein subunit beta-2;	98.16
3k26_A	366	Polycomb protein EED; WD40, structural genomics, N	98.15
2xzm_R	343	RACK1; ribosome, translation; 3.93A {Tetrahymena t	98.15
3dm0_A	694	Maltose-binding periplasmic protein fused with RAC	98.14
3c5m_A	396	Oligogalacturonate lyase; blade-shaped beta-propel	98.13
2wg3_C	463	Hedgehog-interacting protein; lipoprotein, develop	98.11
2pm7_B	297	Protein transport protein SEC13, protein transport	98.1
2gop_A	347	Trilobed protease; beta propeller, open velcro, hy	98.08
3jro_A	753	Fusion protein of protein transport protein SEC13	98.07
2oaj_A	902	Protein SNI1; WD40 repeat, beta propeller, endocyt	98.0
2bkl_A	695	Prolyl endopeptidase; mechanistic study, celiac sp	98.0
3s25_A	302	Hypothetical 7-bladed beta-propeller-like protein;	98.0
3vu4_A	355	KMHSV2; beta-propeller fold, protein transport; 2.	98.0
1tl2_A	236	L10, protein (tachylectin-2); animal lectin, horse	97.96
3mmy_A	368	MRNA export factor; mRNA export, nuclear protein;	97.94
4aow_A	340	Guanine nucleotide-binding protein subunit beta-2;	97.93
2j04_B	524	YDR362CP, TAU91; beta propeller, type 2 promoters,	97.92
4a5s_A	740	Dipeptidyl peptidase 4 soluble form; hydrolase, ty	97.92
4gga_A	420	P55CDC, cell division cycle protein 20 homolog; ce	97.92
1kb0_A	677	Quinohemoprotein alcohol dehydrogenase; beta-prope	97.91
3v7d_B	464	Cell division control protein 4; WD 40 domain, pho	97.91
4e54_B	435	DNA damage-binding protein 2; beta barrel, double	97.9
4a11_B	408	DNA excision repair protein ERCC-8; DNA binding pr	97.89
2xbg_A	327	YCF48-like protein; photosynthesis, photosystem II	97.87
3bg1_A	316	Protein SEC13 homolog; NPC, transport, WD repeat,	97.86
3c5m_A	396	Oligogalacturonate lyase; blade-shaped beta-propel	97.85
3bg1_A	316	Protein SEC13 homolog; NPC, transport, WD repeat,	97.85
4a5s_A	740	Dipeptidyl peptidase 4 soluble form; hydrolase, ty	97.85
3zwu_A	592	Alkaline phosphatase PHOX; hydrolase, beta-propell	97.82
3v7d_B	464	Cell division control protein 4; WD 40 domain, pho	97.82
4ggc_A	318	P55CDC, cell division cycle protein 20 homolog; ce	97.81
2xbg_A	327	YCF48-like protein; photosynthesis, photosystem II	97.79
3f3f_A	351	Nucleoporin SEH1; structural protein, protein comp	97.78
2ad6_A	571	Methanol dehydrogenase subunit 1; PQQ configuratio	97.78
3gre_A	437	Serine/threonine-protein kinase VPS15; seven-blade	97.75
1z68_A	719	Fibroblast activation protein, alpha subunit; sepr	97.7
3iuj_A	693	Prolyl endopeptidase; hydrolase; 1.80A {Aeromonas	97.68
3gre_A	437	Serine/threonine-protein kinase VPS15; seven-blade	97.65
3amr_A	355	3-phytase; beta-propeller, phytate, MYO-inositol h	97.63
1yr2_A	741	Prolyl oligopeptidase; prolyl endopeptidase, mecha	97.63
3vu4_A	355	KMHSV2; beta-propeller fold, protein transport; 2.	97.61
1flg_A	582	Protein (quinoprotein ethanol dehydrogenase); supe	97.58
1kv9_A	668	Type II quinohemoprotein alcohol dehydrogenase; el	97.51
2ad6_A	571	Methanol dehydrogenase subunit 1; PQQ configuratio	97.5
1yiq_A	689	Quinohemoprotein alcohol dehydrogenase; electron t	97.5
1w6s_A	599	Methanol dehydrogenase subunit 1; anisotropic, ele	97.5
2gop_A	347	Trilobed protease; beta propeller, open velcro, hy	97.47
2hz6_A	369	Endoplasmic reticulum to nucleus signalling 1 isof	97.47
1kb0_A	677	Quinohemoprotein alcohol dehydrogenase; beta-prope	97.45
2j04_B	524	YDR362CP, TAU91; beta propeller, type 2 promoters,	97.44
2ovr_B	445	FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40	97.39
2oit_A	434	Nucleoporin 214KDA; NH2 terminal domain of NUP214/	97.35
4gq1_A	393	NUP37; propeller, transport protein; 2.40A {Schizo	97.35
4gga_A	420	P55CDC, cell division cycle protein 20 homolog; ce	97.33
2xdw_A	710	Prolyl endopeptidase; alpha/beta-hydrolase, amnesi	97.2
1w6s_A	599	Methanol dehydrogenase subunit 1; anisotropic, ele	97.18
4a9v_A	592	PHOX; hydrolase, beta-propeller; 1.10A {Pseudomona	97.15
2ovr_B	445	FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40	97.13
1kv9_A	668	Type II quinohemoprotein alcohol dehydrogenase; el	97.1
1yiq_A	689	Quinohemoprotein alcohol dehydrogenase; electron t	97.04
2oit_A	434	Nucleoporin 214KDA; NH2 terminal domain of NUP214/	96.96
4ggc_A	318	P55CDC, cell division cycle protein 20 homolog; ce	96.91
2bkl_A	695	Prolyl endopeptidase; mechanistic study, celiac sp	96.73
2w18_A	356	PALB2, fancn, partner and localizer of BRCA2; fanc	96.72
3iuj_A	693	Prolyl endopeptidase; hydrolase; 1.80A {Aeromonas	96.67
1flg_A	582	Protein (quinoprotein ethanol dehydrogenase); supe	96.62
2w18_A	356	PALB2, fancn, partner and localizer of BRCA2; fanc	96.6
1yr2_A	741	Prolyl oligopeptidase; prolyl endopeptidase, mecha	96.34
1p22_A	435	F-BOX/WD-repeat protein 1A; ubiquitination, degrad	96.19
1p22_A	435	F-BOX/WD-repeat protein 1A; ubiquitination, degrad	95.31
2cn3_A	737	Xyloglucanase, beta-1,4-xyloglucan hydrolase; glyc	95.25
3zwu_A	592	Alkaline phosphatase PHOX; hydrolase, beta-propell	95.19
2xe4_A	751	Oligopeptidase B; hydrolase-inhibitor complex, hyd	94.91
1xip_A	388	Nucleoporin NUP159; beta-propeller, transport prot	94.54
2be1_A	339	Serine/threonine-protein kinase/endoribonuclease;	94.52
1sqj_A	789	OXG-RCBH, oligoxyloglucan reducing-END-specific ce	94.49
4gq1_A	393	NUP37; propeller, transport protein; 2.40A {Schizo	94.01
2xe4_A	751	Oligopeptidase B; hydrolase-inhibitor complex, hyd	93.52
3a0f_A	763	Xyloglucanase; beta-propeller, hydrolase; 2.50A {G	93.51
1k3i_A	656	Galactose oxidase precursor; blade beta propeller,	92.95
1sqj_A	789	OXG-RCBH, oligoxyloglucan reducing-END-specific ce	91.63
2cn3_A	737	Xyloglucanase, beta-1,4-xyloglucan hydrolase; glyc	91.47
3a0f_A	763	Xyloglucanase; beta-propeller, hydrolase; 2.50A {G	91.44
2uvk_A	357	YJHT; unknown function, hypothetical protein, sial	90.47
2vpj_A	301	Kelch-like protein 12; adaptor protein, WNT signal	89.6
1zgk_A	308	Kelch-like ECH-associated protein 1; beta-propelle	89.57
3sbq_A	638	Nitrous-oxide reductase; beta-propeller, cupredoxi	88.59
2be1_A	339	Serine/threonine-protein kinase/endoribonuclease;	84.68
1zgk_A	308	Kelch-like ECH-associated protein 1; beta-propelle	83.61
1xip_A	388	Nucleoporin NUP159; beta-propeller, transport prot	82.76
2zwa_A	695	Leucine carboxyl methyltransferase 2; HET: SAH CIT	82.54
4asc_A	315	Kelch repeat and BTB domain-containing protein 5;	82.13
4asc_A	315	Kelch repeat and BTB domain-containing protein 5;	81.2
3ii7_A	306	Kelch-like protein 7; protein-binding, kelch-repea	81.09
2hz6_A	369	Endoplasmic reticulum to nucleus signalling 1 isof	80.12

>2fp8_A Strictosidine synthase; six bladed beta propeller fold, lyase; 2.30A {Rauvolfia serpentina} PDB: 2fp9_A* 2fpc_A* 2vaq_A* 3v1s_A* 2fpb_A* 2v91_A*

Probab=99.94  E-value=2e-25  Score=181.55  Aligned_cols=208  Identities=26%  Similarity=0.452  Sum_probs=156.8

Q ss_pred             ccccCCcccEEEcCCCc-EEEEeCCCcEEEEccCC-ceeEecc--------------------cCCccccceEEcc-CCC
Q 026118            6 EGIVNHPEDVSVDGNGV-LYTATGDGWIKRMHPNG-TWEDWHQ--------------------VGSQSLLGLTTTK-ENN   62 (243)
Q Consensus         6 ~g~~~~p~~i~~d~~g~-l~~~~~~~~i~~~~~~g-~~~~~~~--------------------~~~~~~~~i~~~~-~g~   62 (243)
                      .|.+..|+++++|++|+ +|++..+++|+++++++ ++..+..                    ....|. +|++++ +|+
T Consensus        15 ~g~~~~p~~i~~d~~g~~l~v~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~p~-gi~~~~~~g~   93 (322)
T 2fp8_A           15 EAPSYAPNSFTFDSTNKGFYTSVQDGRVIKYEGPNSGFVDFAYASPYWNKAFCENSTDAEKRPLCGRTY-DISYNLQNNQ   93 (322)
T ss_dssp             ECSSSCCCCEECCTTCSSEEEECTTSEEEEECCTTTCEEEEEESCTTCCHHHHTTCCCGGGHHHHCCEE-EEEEETTTTE
T ss_pred             CCccCCceEEEEcCCCCEEEEEcCCCeEEEECCCCCceEEEecccccccccccccccchhccccCCCCc-eEEEcCCCCc
Confidence            35578999999999997 88888889999999654 5655431                    113577 999997 788


Q ss_pred             EEEEEeCCCcEEEEe-cCC-cEEEEeccCCCcccCCccEEEcC-CCcEEEEeCCCCCCcccccccccccCCCceEEEEeC
Q 026118           63 VIIVCDSQQGLLKVS-EEG-VTVLVSQFNGSQLRFANDVIEAS-DGSLYFTVSSTKFTPAEYYLDLVSGEPHGVLLKYDP  139 (243)
Q Consensus        63 l~~v~~~~~gl~~~~-~~g-~~~~~~~~~~~~~~~~~~l~~d~-~G~l~v~~~~~~~~~~~~~~~~~~~~~~g~v~~~~~  139 (243)
                      + ||++...++++++ .++ .+.+.....+.....++++++++ +|++|++++...++...+...+.+....++|+++++
T Consensus        94 l-~v~d~~~~i~~~d~~~g~~~~~~~~~~~~~~~~p~~i~~d~~~G~l~v~d~~~~~~~~~~~~~~~~~~~~g~v~~~d~  172 (322)
T 2fp8_A           94 L-YIVDCYYHLSVVGSEGGHATQLATSVDGVPFKWLYAVTVDQRTGIVYFTDVSTLYDDRGVQQIMDTSDKTGRLIKYDP  172 (322)
T ss_dssp             E-EEEETTTEEEEECTTCEECEEEESEETTEECSCEEEEEECTTTCCEEEEESCSSCCTTCHHHHHHHTCCCEEEEEEET
T ss_pred             E-EEEECCCCEEEEeCCCCEEEEecccCCCCcccccceEEEecCCCEEEEECCcccccccccceehcccCCCceEEEEeC
Confidence            8 9998878899999 445 55555433444456789999999 999999986532322111111112234578999999


Q ss_pred             CCCeeEEeeccccccceEEEcCCCCEEEEEEcCCCeEEEEEeecCCCcceEEeccCCCCCCCceEECCCCCEEEEEec
Q 026118          140 STNQTSLVLDGLYFANGVALSEDERFLVVCESWKFRCVKHFLKVSGRTDREIFIDNLPGGPDNVNLARDGSFWISIIK  217 (243)
Q Consensus       140 ~~~~~~~~~~~~~~~~gi~~~~dg~~l~v~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~i~~d~~G~lwv~~~~  217 (243)
                      ++++++.+......|++|+++++|+.||+++..+++|++|++++...+..+.+.. .++ |++|++|++|+|||+++.
T Consensus       173 ~~~~~~~~~~~~~~p~gia~~~dg~~lyv~d~~~~~I~~~~~~~~~~~~~~~~~~-~~g-P~gi~~d~~G~l~va~~~  248 (322)
T 2fp8_A          173 STKETTLLLKELHVPGGAEVSADSSFVLVAEFLSHQIVKYWLEGPKKGTAEVLVK-IPN-PGNIKRNADGHFWVSSSE  248 (322)
T ss_dssp             TTTEEEEEEEEESCCCEEEECTTSSEEEEEEGGGTEEEEEESSSTTTTCEEEEEE-CSS-EEEEEECTTSCEEEEEEE
T ss_pred             CCCEEEEeccCCccCcceEECCCCCEEEEEeCCCCeEEEEECCCCcCCccceEEe-CCC-CCCeEECCCCCEEEEecC
Confidence            8888777766678899999999999999999988999999988655555555543 445 999999999999999976

>3dr2_A Exported gluconolactonase; gluconolactonase SMP-30, six-bladed-propeller dimer, vitamin C, hydrolase; 1.67A {Xanthomonas campestris PV}

Probab=99.93  E-value=3.5e-24  Score=172.97  Aligned_cols=209  Identities=20%  Similarity=0.273  Sum_probs=156.6

Q ss_pred             ceecccccCCcccEEEcCCCc-EEEEe-CCCcEEEEccCCceeEecccCCccccceEEccCCCEEEEEeCC-CcEEEEec
Q 026118            2 IKLGEGIVNHPEDVSVDGNGV-LYTAT-GDGWIKRMHPNGTWEDWHQVGSQSLLGLTTTKENNVIIVCDSQ-QGLLKVSE   78 (243)
Q Consensus         2 ~~~~~g~~~~p~~i~~d~~g~-l~~~~-~~~~i~~~~~~g~~~~~~~~~~~~~~~i~~~~~g~l~~v~~~~-~gl~~~~~   78 (243)
                      +++.++ +..+++++++++|+ ||+++ .+++|++++++++...+......+. +++++++|++ |+++.. .+|.+++.
T Consensus        38 ~~l~~~-~~~~egp~~~~~g~~l~~~d~~~~~i~~~~~~g~~~~~~~~~~~~~-gl~~d~dG~l-~v~~~~~~~v~~~~~  114 (305)
T 3dr2_A           38 LTLYDQ-ATWSEGPAWWEAQRTLVWSDLVGRRVLGWREDGTVDVLLDATAFTN-GNAVDAQQRL-VHCEHGRRAITRSDA  114 (305)
T ss_dssp             EEEECC-CSSEEEEEEEGGGTEEEEEETTTTEEEEEETTSCEEEEEESCSCEE-EEEECTTSCE-EEEETTTTEEEEECT
T ss_pred             EEEecC-CcCccCCeEeCCCCEEEEEECCCCEEEEEeCCCCEEEEeCCCCccc-eeeECCCCCE-EEEECCCCEEEEECC
Confidence            566776 77899999999886 65555 7889999998887777665556677 9999999998 999865 57999995


Q ss_pred             CC-cEEEEeccCCCcccCCccEEEcCCCcEEEEeCCCCCCccc-cc-ccccccCCCceEEEEeCCCCeeEEeeccccccc
Q 026118           79 EG-VTVLVSQFNGSQLRFANDVIEASDGSLYFTVSSTKFTPAE-YY-LDLVSGEPHGVLLKYDPSTNQTSLVLDGLYFAN  155 (243)
Q Consensus        79 ~g-~~~~~~~~~~~~~~~~~~l~~d~~G~l~v~~~~~~~~~~~-~~-~~~~~~~~~g~v~~~~~~~~~~~~~~~~~~~~~  155 (243)
                      +| .+.+.....+...+.+++++++++|++|++++.  |+... +. .........+.||++++++++++.+. ....|+
T Consensus       115 ~g~~~~~~~~~~~~~~~~~~~i~~d~dG~l~~td~~--~g~~~~~~~~~~~~~~~~~~v~~~d~~~g~~~~~~-~~~~p~  191 (305)
T 3dr2_A          115 DGQAHLLVGRYAGKRLNSPNDLIVARDGAIWFTDPP--FGLRKPSQGCPADPELAHHSVYRLPPDGSPLQRMA-DLDHPN  191 (305)
T ss_dssp             TSCEEEEECEETTEECSCCCCEEECTTSCEEEECCS--GGGSCGGGSCCCCCSSSCEEEEEECSSSCCCEEEE-EESSEE
T ss_pred             CCCEEEEEeccCCCccCCCCCEEECCCCCEEEeCcC--CCccccccccccccccCCCeEEEEcCCCCcEEEEe-cCCCCc
Confidence            57 666655444555677899999999999998753  11000 00 00000112468999999888887776 777899


Q ss_pred             eEEEcCCCCEEEEEEcCC-----CeEEEEEeecCCCcceEEeccCCCCCCCceEECCCCCEEEEEe
Q 026118          156 GVALSEDERFLVVCESWK-----FRCVKHFLKVSGRTDREIFIDNLPGGPDNVNLARDGSFWISII  216 (243)
Q Consensus       156 gi~~~~dg~~l~v~~~~~-----~~i~~~~~~~~~~~~~~~~~~~~~~~~~~i~~d~~G~lwv~~~  216 (243)
                      ++++++|++.||+++...     +.|++|+.+++.+...+.+.....+.|++|++|++|+||+++.
T Consensus       192 gl~~spdg~~lyv~~~~~~~~~~~~i~~~~~~~~~l~~~~~~~~~~~~~pdgi~~d~~G~lwv~~~  257 (305)
T 3dr2_A          192 GLAFSPDEQTLYVSQTPEQGHGSVEITAFAWRDGALHDRRHFASVPDGLPDGFCVDRGGWLWSSSG  257 (305)
T ss_dssp             EEEECTTSSEEEEEECCC---CCCEEEEEEEETTEEEEEEEEECCSSSCCCSEEECTTSCEEECCS
T ss_pred             ceEEcCCCCEEEEEecCCcCCCCCEEEEEEecCCCccCCeEEEECCCCCCCeEEECCCCCEEEecC
Confidence            999999999999998763     7899999886544445555544567899999999999999984

>3g4e_A Regucalcin; six bladed beta-propeller, gluconolcatonase, organophosphate hydrolase, calcium bound, alternative splicing, cytoplasm, phosphoprotein; 1.42A {Homo sapiens} PDB: 3g4h_B

Probab=99.91  E-value=1.5e-22  Score=162.87  Aligned_cols=205  Identities=12%  Similarity=0.117  Sum_probs=149.2

Q ss_pred             ecccccCCcccEEEcC-CCcEEEEe-CCCcEEEEccC-CceeEecccCCccccceEEccCCCEEEEEeCCCcEEEEe-cC
Q 026118            4 LGEGIVNHPEDVSVDG-NGVLYTAT-GDGWIKRMHPN-GTWEDWHQVGSQSLLGLTTTKENNVIIVCDSQQGLLKVS-EE   79 (243)
Q Consensus         4 ~~~g~~~~p~~i~~d~-~g~l~~~~-~~~~i~~~~~~-g~~~~~~~~~~~~~~~i~~~~~g~l~~v~~~~~gl~~~~-~~   79 (243)
                      +....+..+|++++++ ++.||+++ .+++|++++++ ++...+.. ...+. +++++++|++ |++. ..+|++++ .+
T Consensus         7 ~~~~~~~~~Egp~w~~~~~~l~~~d~~~~~i~~~d~~~~~~~~~~~-~~~~~-~i~~~~dG~l-~v~~-~~~l~~~d~~~   82 (297)
T 3g4e_A            7 VLPENCRCGESPVWEEVSNSLLFVDIPAKKVCRWDSFTKQVQRVTM-DAPVS-SVALRQSGGY-VATI-GTKFCALNWKE   82 (297)
T ss_dssp             EECCCCSBEEEEEEETTTTEEEEEETTTTEEEEEETTTCCEEEEEC-SSCEE-EEEEBTTSSE-EEEE-TTEEEEEETTT
T ss_pred             EeccCCccccCCeEECCCCEEEEEECCCCEEEEEECCCCcEEEEeC-CCceE-EEEECCCCCE-EEEE-CCeEEEEECCC
Confidence            3444577889999997 67788777 67899999954 45544433 34566 8999999997 9987 57999999 56


Q ss_pred             C-cEEEEeccCCCcccCCccEEEcCCCcEEEEeCCCCCCcccccccccccCCCceEEEEeCCCCeeEEeeccccccceEE
Q 026118           80 G-VTVLVSQFNGSQLRFANDVIEASDGSLYFTVSSTKFTPAEYYLDLVSGEPHGVLLKYDPSTNQTSLVLDGLYFANGVA  158 (243)
Q Consensus        80 g-~~~~~~~~~~~~~~~~~~l~~d~~G~l~v~~~~~~~~~~~~~~~~~~~~~~g~v~~~~~~~~~~~~~~~~~~~~~gi~  158 (243)
                      + .+.+.......+...++++++|++|++|++++.....      ........+.||+++++ ++...+......|++++
T Consensus        83 g~~~~~~~~~~~~~~~~~~di~~d~dG~l~~~~~~~~~~------~~~~~~~~~~l~~~d~~-g~~~~~~~~~~~pngi~  155 (297)
T 3g4e_A           83 QSAVVLATVDNDKKNNRFNDGKVDPAGRYFAGTMAEETA------PAVLERHQGALYSLFPD-HHVKKYFDQVDISNGLD  155 (297)
T ss_dssp             TEEEEEEECCTTCSSEEEEEEEECTTSCEEEEEEECCSB------TTBCCTTCEEEEEECTT-SCEEEEEEEESBEEEEE
T ss_pred             CcEEEEEecCCCCCCCCCCCEEECCCCCEEEecCCcccc------cccccCCCcEEEEEECC-CCEEEEeeccccccceE
Confidence            7 6655543333345678899999999999997531100      00011234689999997 66666666677899999


Q ss_pred             EcCCCCEEEEEEcCCCeEEEEEee--cCCCcceEEecc--CCCCCCCceEECCCCCEEEEEecCC
Q 026118          159 LSEDERFLVVCESWKFRCVKHFLK--VSGRTDREIFID--NLPGGPDNVNLARDGSFWISIIKMD  219 (243)
Q Consensus       159 ~~~dg~~l~v~~~~~~~i~~~~~~--~~~~~~~~~~~~--~~~~~~~~i~~d~~G~lwv~~~~~~  219 (243)
                      +++|++.||+++..++.|++|+++  ++.+...+.+..  ...+.|++|++|++|+||++++.++
T Consensus       156 ~spdg~~lyv~~~~~~~i~~~~~d~~~G~~~~~~~~~~~~~~~~~p~g~~~d~~G~lwva~~~~~  220 (297)
T 3g4e_A          156 WSLDHKIFYYIDSLSYSVDAFDYDLQTGQISNRRSVYKLEKEEQIPDGMCIDAEGKLWVACYNGG  220 (297)
T ss_dssp             ECTTSCEEEEEEGGGTEEEEEEECTTTCCEEEEEEEEECCGGGCEEEEEEEBTTSCEEEEEETTT
T ss_pred             EcCCCCEEEEecCCCCcEEEEeccCCCCcccCcEEEEECCCCCCCCCeeEECCCCCEEEEEcCCC
Confidence            999999999999988999999985  333443444432  2235799999999999999998764

>3e5z_A Putative gluconolactonase; X-RAY NESG Q9RXN3 gluconolactonase, structural genomics, PSI protein structure initiative; 2.01A {Deinococcus radiodurans}

Probab=99.91  E-value=3e-22  Score=160.66  Aligned_cols=206  Identities=18%  Similarity=0.222  Sum_probs=149.6

Q ss_pred             ceecccccCCcccEEEcCCCc-EEE-EeCCCcEEEEccCCceeEecccCCccccceEEccCCCEEEEEeCC-CcEEEEe-
Q 026118            2 IKLGEGIVNHPEDVSVDGNGV-LYT-ATGDGWIKRMHPNGTWEDWHQVGSQSLLGLTTTKENNVIIVCDSQ-QGLLKVS-   77 (243)
Q Consensus         2 ~~~~~g~~~~p~~i~~d~~g~-l~~-~~~~~~i~~~~~~g~~~~~~~~~~~~~~~i~~~~~g~l~~v~~~~-~gl~~~~-   77 (243)
                      +.+.++ +..|+++++|++|. ||+ +..+++|+++++++....+......+. +++++++|++ |++... .+|.+++ 
T Consensus        21 ~~l~~~-~~~~eg~~~d~~g~~l~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~-~l~~~~dg~l-~v~~~~~~~i~~~d~   97 (296)
T 3e5z_A           21 RRLADG-FTWTEGPVYVPARSAVIFSDVRQNRTWAWSDDGQLSPEMHPSHHQN-GHCLNKQGHL-IACSHGLRRLERQRE   97 (296)
T ss_dssp             EEEECC-CSSEEEEEEEGGGTEEEEEEGGGTEEEEEETTSCEEEEESSCSSEE-EEEECTTCCE-EEEETTTTEEEEECS
T ss_pred             EEEecC-CccccCCeEeCCCCEEEEEeCCCCEEEEEECCCCeEEEECCCCCcc-eeeECCCCcE-EEEecCCCeEEEEcC
Confidence            345554 78899999999887 554 457889999996555666655445677 9999999998 998865 5799999 


Q ss_pred             cCC-cEEEEeccCCCcccCCccEEEcCCCcEEEEeCCCCCCcc-ccc-ccccccCCCceEEEEeCCCCeeEEeecccccc
Q 026118           78 EEG-VTVLVSQFNGSQLRFANDVIEASDGSLYFTVSSTKFTPA-EYY-LDLVSGEPHGVLLKYDPSTNQTSLVLDGLYFA  154 (243)
Q Consensus        78 ~~g-~~~~~~~~~~~~~~~~~~l~~d~~G~l~v~~~~~~~~~~-~~~-~~~~~~~~~g~v~~~~~~~~~~~~~~~~~~~~  154 (243)
                      .+| .+.+...........+++++++++|++|++++..  +.. .+. .........++||+++++ ++++.+......|
T Consensus        98 ~~g~~~~~~~~~~~~~~~~~~~i~~d~~G~l~vtd~~~--g~~~~~~~~~~~~~~~~~~l~~~~~~-g~~~~~~~~~~~~  174 (296)
T 3e5z_A           98 PGGEWESIADSFEGKKLNSPNDVCLAPDGSLWFSDPTY--GIDKPEEGYGGEMELPGRWVFRLAPD-GTLSAPIRDRVKP  174 (296)
T ss_dssp             TTCCEEEEECEETTEECCCCCCEEECTTSCEEEEECSH--HHHCGGGSSCCCCCSSSCEEEEECTT-SCEEEEECCCSSE
T ss_pred             CCCcEEEEeeccCCCCCCCCCCEEECCCCCEEEECCcc--ccccccccccccccCCCcEEEEECCC-CCEEEeecCCCCC
Confidence            577 6555443333345678899999999999986520  000 000 000001124589999998 7777777777889


Q ss_pred             ceEEEcCCCCEEEEEEcCCCeEEEEEee-cCCC-cceEEeccCCCCCCCceEECCCCCEEEEE
Q 026118          155 NGVALSEDERFLVVCESWKFRCVKHFLK-VSGR-TDREIFIDNLPGGPDNVNLARDGSFWISI  215 (243)
Q Consensus       155 ~gi~~~~dg~~l~v~~~~~~~i~~~~~~-~~~~-~~~~~~~~~~~~~~~~i~~d~~G~lwv~~  215 (243)
                      ++++++++|+.+ +++..++.|++|+++ .+.+ ...+.+ ....+.|++|++|++|+||+++
T Consensus       175 ~gi~~s~dg~~l-v~~~~~~~i~~~~~~~~g~~~~~~~~~-~~~~~~p~~i~~d~~G~l~v~~  235 (296)
T 3e5z_A          175 NGLAFLPSGNLL-VSDTGDNATHRYCLNARGETEYQGVHF-TVEPGKTDGLRVDAGGLIWASA  235 (296)
T ss_dssp             EEEEECTTSCEE-EEETTTTEEEEEEECSSSCEEEEEEEE-CCSSSCCCSEEEBTTSCEEEEE
T ss_pred             ccEEECCCCCEE-EEeCCCCeEEEEEECCCCcCcCCCeEe-eCCCCCCCeEEECCCCCEEEEc
Confidence            999999999967 888888999999987 3344 334455 4455689999999999999999

>3sre_A PON1, serum paraoxonase; directed evolution, 6-blades-propeller fold, hydrolase; HET: LMT; 1.99A {Artificial gene} PDB: 1v04_A* 3srg_A*

Probab=99.91  E-value=3.3e-22  Score=163.44  Aligned_cols=209  Identities=20%  Similarity=0.309  Sum_probs=151.3

Q ss_pred             ccccCCcccEEEcCCCcEEEEe-------------CCCcEEEEccC---CceeEeccc-------CCccccceEEcc--C
Q 026118            6 EGIVNHPEDVSVDGNGVLYTAT-------------GDGWIKRMHPN---GTWEDWHQV-------GSQSLLGLTTTK--E   60 (243)
Q Consensus         6 ~g~~~~p~~i~~d~~g~l~~~~-------------~~~~i~~~~~~---g~~~~~~~~-------~~~~~~~i~~~~--~   60 (243)
                      ++...+||.|+++++|.+|+++             ..|.|++++++   ++.+.+...       ..+|. ||.+.+  +
T Consensus        46 ~~~~~G~EDi~~~~~G~~~~s~~~~~pg~~~~~~~~~G~I~~~d~~~~~~~~~~l~~~g~~~~~~~f~Ph-Gi~~~~d~d  124 (355)
T 3sre_A           46 KGIDNGSEDLEILPNGLAFISSGLKYPGIMSFDPDKSGKILLMDLNEKEPAVSELEIIGNTLDISSFNPH-GISTFIDDD  124 (355)
T ss_dssp             TTCCSCCCEEEECTTSEEEEEECCC-----------CCEEEEEETTSSSCCEEECEEECSSCCGGGCCEE-EEEEEECTT
T ss_pred             CCCCCCcceeEEcCCCeEEEEeccccCCCcccCCCCCCeEEEEecCCCCCceEEEEccCCCCCcCceeee-eeEEEECCC
Confidence            3434689999999999999996             57889999953   444444322       23688 888755  4


Q ss_pred             CC-EEEEEeCCCc-----EEEEecCC-cEEEEeccCCCcccCCccEEEcCCCcEEEEeCCCCCCccccc-ccccccCCCc
Q 026118           61 NN-VIIVCDSQQG-----LLKVSEEG-VTVLVSQFNGSQLRFANDVIEASDGSLYFTVSSTKFTPAEYY-LDLVSGEPHG  132 (243)
Q Consensus        61 g~-l~~v~~~~~g-----l~~~~~~g-~~~~~~~~~~~~~~~~~~l~~d~~G~l~v~~~~~~~~~~~~~-~~~~~~~~~g  132 (243)
                      |+ .|||++...+     +++++.++ ...+.....+.+.+.+|+++++++|++|++++.. |...... .........+
T Consensus       125 g~~~L~Vvnh~~~~s~ielf~~d~~~~~~~~~~~~~g~~~~~pND~~v~~~G~fyvt~~~~-ftd~~~~~~e~~~~~~~g  203 (355)
T 3sre_A          125 NTVYLLVVNHPGSSSTVEVFKFQEEEKSLLHLKTIRHKLLPSVNDIVAVGPEHFYATNDHY-FIDPYLKSWEMHLGLAWS  203 (355)
T ss_dssp             CCEEEEEEECSTTCCEEEEEEEETTTTEEEEEEEECCTTCSSEEEEEEEETTEEEEEESCS-CSSHHHHHHHHHTTCCCE
T ss_pred             CcEEEEEEECCCCCCeEEEEEEECCCCEEEEEeccccCCCCCCceEEEeCCCCEEecCCcE-eCCcccccchhhccCCcc
Confidence            54 3499987643     77777444 4445555667778899999999999999998641 1111100 0011123468


Q ss_pred             eEEEEeCCCCeeEEeeccccccceEEEcCCCCEEEEEEcCCCeEEEEEeec-CCCcceEEeccCCCCCCCceEECC-CCC
Q 026118          133 VLLKYDPSTNQTSLVLDGLYFANGVALSEDERFLVVCESWKFRCVKHFLKV-SGRTDREIFIDNLPGGPDNVNLAR-DGS  210 (243)
Q Consensus       133 ~v~~~~~~~~~~~~~~~~~~~~~gi~~~~dg~~l~v~~~~~~~i~~~~~~~-~~~~~~~~~~~~~~~~~~~i~~d~-~G~  210 (243)
                      .||++++.  +.+.+..+...||||+++||+++||++++..++|++|+++. +.+...+.+  ..++.|+||++|+ +|+
T Consensus       204 ~vyr~d~~--~~~~~~~~l~~pNGia~spDg~~lYvadt~~~~I~~~~~~~~g~l~~~~~~--~~~g~PDGi~vD~e~G~  279 (355)
T 3sre_A          204 FVTYYSPN--DVRVVAEGFDFANGINISPDGKYVYIAELLAHKIHVYEKHANWTLTPLRVL--SFDTLVDNISVDPVTGD  279 (355)
T ss_dssp             EEEEECTT--CCEEEEEEESSEEEEEECTTSSEEEEEEGGGTEEEEEEECTTSCEEEEEEE--ECSSEEEEEEECTTTCC
T ss_pred             EEEEEECC--eEEEeecCCcccCcceECCCCCEEEEEeCCCCeEEEEEECCCCcEecCEEE--eCCCCCceEEEeCCCCc
Confidence            89999994  67777888899999999999999999999999999999974 345555565  3467899999999 599


Q ss_pred             EEEEEecCCc
Q 026118          211 FWISIIKMDP  220 (243)
Q Consensus       211 lwv~~~~~~~  220 (243)
                      ||++...++.
T Consensus       280 lwva~~~~g~  289 (355)
T 3sre_A          280 LWVGCHPNGM  289 (355)
T ss_dssp             EEEEEESCHH
T ss_pred             EEEEecCCce
Confidence            9998764433

>1pjx_A Dfpase, DIISOPROPYLFLUOROPHOSPHATASE; phosphotriesterase (PTE), nitrogen-calcium coordination, BET propeller; HET: ME2 MES PGE; 0.85A {Loligo vulgaris} SCOP: b.68.6.1 PDB: 1e1a_A* 2gvv_A* 2gvw_A 3byc_A 3kgg_A 3o4p_A* 3li3_A 2gvx_A 2gvu_A 3li4_A 2iaq_A 3li5_A* 2iao_A 2iap_A 2iau_A 2iax_A 2iaw_A 2ias_A 2iat_A 2iar_A ...

Probab=99.88  E-value=9.4e-21  Score=152.59  Aligned_cols=210  Identities=22%  Similarity=0.329  Sum_probs=147.2

Q ss_pred             eecccccCCcccEEEcCCCcEEEE--------eCCCcEEEEc-cCCceeEecc-----cCCccccceEEccC-CCEEEEE
Q 026118            3 KLGEGIVNHPEDVSVDGNGVLYTA--------TGDGWIKRMH-PNGTWEDWHQ-----VGSQSLLGLTTTKE-NNVIIVC   67 (243)
Q Consensus         3 ~~~~g~~~~p~~i~~d~~g~l~~~--------~~~~~i~~~~-~~g~~~~~~~-----~~~~~~~~i~~~~~-g~l~~v~   67 (243)
                      .+..+ +..|+++++|++|+||++        ..+++|++++ .++++..+..     ....+. +++++++ |++ |++
T Consensus        12 ~~~~~-~~~~~~~~~~~~g~l~~~~~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~~-~i~~~~~~g~l-~v~   88 (314)
T 1pjx_A           12 KVTED-IPGAEGPVFDKNGDFYIVAPEVEVNGKPAGEILRIDLKTGKKTVICKPEVNGYGGIPA-GCQCDRDANQL-FVA   88 (314)
T ss_dssp             EEECC-CTTCEEEEECTTSCEEEEETTCEETTEECCEEEEECTTTCCEEEEECCEETTEECCEE-EEEECSSSSEE-EEE
T ss_pred             hhhcc-CCCccCceECCCCCEEEEEeccccCCCCCCEEEEEeCCCCcEEEEEecccCCCCCCCc-eEEEecCCCcE-EEE
Confidence            34444 889999999999999998        4678899999 5777765543     224567 8999999 888 999


Q ss_pred             eCCCcEEEEecCC-cEEE-EeccCCCcccCCccEEEcCCCcEEEEeCCCCCCcccccccccccCCCceEEEEeCCCCeeE
Q 026118           68 DSQQGLLKVSEEG-VTVL-VSQFNGSQLRFANDVIEASDGSLYFTVSSTKFTPAEYYLDLVSGEPHGVLLKYDPSTNQTS  145 (243)
Q Consensus        68 ~~~~gl~~~~~~g-~~~~-~~~~~~~~~~~~~~l~~d~~G~l~v~~~~~~~~~~~~~~~~~~~~~~g~v~~~~~~~~~~~  145 (243)
                      +...+|++++.++ .+.+ ...........+++++++++|++|+++.........+  ........++|++++++ ++..
T Consensus        89 ~~~~~l~~~d~~g~~~~~~~~~~~~~~~~~~~~i~~d~~g~l~v~~~~~~~~~~~~--~~~~~~~~~~l~~~~~~-g~~~  165 (314)
T 1pjx_A           89 DMRLGLLVVQTDGTFEEIAKKDSEGRRMQGCNDCAFDYEGNLWITAPAGEVAPADY--TRSMQEKFGSIYCFTTD-GQMI  165 (314)
T ss_dssp             ETTTEEEEEETTSCEEECCSBCTTSCBCBCCCEEEECTTSCEEEEECBCBCTTSCC--CBTTSSSCEEEEEECTT-SCEE
T ss_pred             ECCCCEEEEeCCCCEEEEEeccCCCccccCCcCEEECCCCCEEEEecCcccccccc--cccccCCCCeEEEECCC-CCEE
Confidence            8767899999337 5444 3222222345688999999999999975410000000  00011223689999998 7776


Q ss_pred             EeeccccccceEEEc----CCCCEEEEEEcCCCeEEEEEeec-CCCcceEEecc--CCC-CCCCceEECCCCCEEEEEec
Q 026118          146 LVLDGLYFANGVALS----EDERFLVVCESWKFRCVKHFLKV-SGRTDREIFID--NLP-GGPDNVNLARDGSFWISIIK  217 (243)
Q Consensus       146 ~~~~~~~~~~gi~~~----~dg~~l~v~~~~~~~i~~~~~~~-~~~~~~~~~~~--~~~-~~~~~i~~d~~G~lwv~~~~  217 (243)
                      .+......+++++++    ++|+.||+++..++.|++|+.+. +.+...+.+..  ... +.|.+|++|++|+||+++..
T Consensus       166 ~~~~~~~~~~~i~~~~~~d~dg~~l~v~~~~~~~i~~~~~~~~g~~~~~~~~~~~~~~~~~~p~~i~~d~~G~l~v~~~~  245 (314)
T 1pjx_A          166 QVDTAFQFPNGIAVRHMNDGRPYQLIVAETPTKKLWSYDIKGPAKIENKKVWGHIPGTHEGGADGMDFDEDNNLLVANWG  245 (314)
T ss_dssp             EEEEEESSEEEEEEEECTTSCEEEEEEEETTTTEEEEEEEEETTEEEEEEEEEECCCCSSCEEEEEEEBTTCCEEEEEET
T ss_pred             EeccCCCCcceEEEecccCCCCCEEEEEECCCCeEEEEECCCCCccccceEEEECCCCCCCCCCceEECCCCCEEEEEcC
Confidence            665556678999999    99988999988889999999862 22222233322  111 56899999999999999865


Q ss_pred             C
Q 026118          218 M  218 (243)
Q Consensus       218 ~  218 (243)
                      .
T Consensus       246 ~  246 (314)
T 1pjx_A          246 S  246 (314)
T ss_dssp             T
T ss_pred             C
Confidence            4

>2p4o_A Hypothetical protein; putative lactonase, structural genomics, joint center for ST genomics, JCSG, protein structure initiative, PSI-2; HET: MSE; 1.90A {Nostoc punctiforme} SCOP: b.68.6.3

Probab=99.86  E-value=2e-19  Score=145.24  Aligned_cols=184  Identities=18%  Similarity=0.253  Sum_probs=138.4

Q ss_pred             CCcccEEEcCCCcEEEEe-CCCcEEEEccCCceeEecccCCccccceEEccCCCEEEEEeCC-Cc--EEEEe-cCC-cEE
Q 026118           10 NHPEDVSVDGNGVLYTAT-GDGWIKRMHPNGTWEDWHQVGSQSLLGLTTTKENNVIIVCDSQ-QG--LLKVS-EEG-VTV   83 (243)
Q Consensus        10 ~~p~~i~~d~~g~l~~~~-~~~~i~~~~~~g~~~~~~~~~~~~~~~i~~~~~g~l~~v~~~~-~g--l~~~~-~~g-~~~   83 (243)
                      ..|+++++|++|+||+++ .+++|++++++++...+......|. +|+++++|++ |+++.. .+  +++++ ++| .+.
T Consensus        32 ~~pegia~~~~g~lyv~d~~~~~I~~~d~~g~~~~~~~~~~~p~-gia~~~dG~l-~vad~~~~~~~v~~~d~~~g~~~~  109 (306)
T 2p4o_A           32 TFLENLASAPDGTIFVTNHEVGEIVSITPDGNQQIHATVEGKVS-GLAFTSNGDL-VATGWNADSIPVVSLVKSDGTVET  109 (306)
T ss_dssp             CCEEEEEECTTSCEEEEETTTTEEEEECTTCCEEEEEECSSEEE-EEEECTTSCE-EEEEECTTSCEEEEEECTTSCEEE
T ss_pred             CCcceEEECCCCCEEEEeCCCCeEEEECCCCceEEEEeCCCCce-eEEEcCCCcE-EEEeccCCcceEEEEcCCCCeEEE
Confidence            679999999999999998 7789999998777665544456788 9999999998 999854 23  88888 677 555


Q ss_pred             EEeccCCCcccCCccEEEcCCCcEEEEeCCCCCCcccccccccccCCCceEEEEeCCCCeeEEe-----------ecccc
Q 026118           84 LVSQFNGSQLRFANDVIEASDGSLYFTVSSTKFTPAEYYLDLVSGEPHGVLLKYDPSTNQTSLV-----------LDGLY  152 (243)
Q Consensus        84 ~~~~~~~~~~~~~~~l~~d~~G~l~v~~~~~~~~~~~~~~~~~~~~~~g~v~~~~~~~~~~~~~-----------~~~~~  152 (243)
                      +....   ....+++++..+++.+|+++..                 .+.||++|+++++.+..           .....
T Consensus       110 ~~~~~---~~~~~~g~~~~~~~~~~v~d~~-----------------~g~i~~~d~~~~~~~v~~~~~~~~~~~~~~~~~  169 (306)
T 2p4o_A          110 LLTLP---DAIFLNGITPLSDTQYLTADSY-----------------RGAIWLIDVVQPSGSIWLEHPMLARSNSESVFP  169 (306)
T ss_dssp             EEECT---TCSCEEEEEESSSSEEEEEETT-----------------TTEEEEEETTTTEEEEEEECGGGSCSSTTCCSC
T ss_pred             EEeCC---CccccCcccccCCCcEEEEECC-----------------CCeEEEEeCCCCcEeEEEECCccccccccCCCC
Confidence            44322   1345678887778889998642                 36899999986532221           12345


Q ss_pred             ccceEEEcCCCCEEEEEEcCCCeEEEEEeec-CCCcceEEeccCCCCCCCceEECCCCCEEEEEecCC
Q 026118          153 FANGVALSEDERFLVVCESWKFRCVKHFLKV-SGRTDREIFIDNLPGGPDNVNLARDGSFWISIIKMD  219 (243)
Q Consensus       153 ~~~gi~~~~dg~~l~v~~~~~~~i~~~~~~~-~~~~~~~~~~~~~~~~~~~i~~d~~G~lwv~~~~~~  219 (243)
                      .|++|  ++++++||+++..+++|++|+++. +.+...+.+..  ...|++|++|++|+|||+.+..+
T Consensus       170 ~pngi--s~dg~~lyv~d~~~~~I~~~~~~~~g~~~~~~~~~~--~~~P~gi~vd~dG~l~va~~~~~  233 (306)
T 2p4o_A          170 AANGL--KRFGNFLYVSNTEKMLLLRIPVDSTDKPGEPEIFVE--QTNIDDFAFDVEGNLYGATHIYN  233 (306)
T ss_dssp             SEEEE--EEETTEEEEEETTTTEEEEEEBCTTSCBCCCEEEEE--SCCCSSEEEBTTCCEEEECBTTC
T ss_pred             cCCCc--CcCCCEEEEEeCCCCEEEEEEeCCCCCCCccEEEec--cCCCCCeEECCCCCEEEEeCCCC
Confidence            68888  788989999999999999999875 34444455532  24799999999999999987643

>2ghs_A AGR_C_1268P; regucalcin, structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PSI-2; 1.55A {Agrobacterium tumefaciens str} SCOP: b.68.6.1

Probab=99.86  E-value=1.8e-19  Score=146.82  Aligned_cols=200  Identities=16%  Similarity=0.188  Sum_probs=142.9

Q ss_pred             ceecccccCCcccEEEcCC-CcEEEEe-CCCcEEEEcc-CCceeEecccCCccccceEEccCCCEEEEEeCCCcEEEEe-
Q 026118            2 IKLGEGIVNHPEDVSVDGN-GVLYTAT-GDGWIKRMHP-NGTWEDWHQVGSQSLLGLTTTKENNVIIVCDSQQGLLKVS-   77 (243)
Q Consensus         2 ~~~~~g~~~~p~~i~~d~~-g~l~~~~-~~~~i~~~~~-~g~~~~~~~~~~~~~~~i~~~~~g~l~~v~~~~~gl~~~~-   77 (243)
                      +.+.+..+..+++++++++ +.+|+++ .+++|+++++ +++...+.. ...+. +++++++|++ |++. ..+|++++ 
T Consensus        41 ~~~~~~~~~~~egp~~~~~~~~l~~~d~~~~~i~~~d~~~~~~~~~~~-~~~v~-~i~~~~dg~l-~v~~-~~gl~~~d~  116 (326)
T 2ghs_A           41 RVLDETPMLLGEGPTFDPASGTAWWFNILERELHELHLASGRKTVHAL-PFMGS-ALAKISDSKQ-LIAS-DDGLFLRDT  116 (326)
T ss_dssp             EEEECSCCSBEEEEEEETTTTEEEEEEGGGTEEEEEETTTTEEEEEEC-SSCEE-EEEEEETTEE-EEEE-TTEEEEEET
T ss_pred             EEeeccCCCCCcCCeEeCCCCEEEEEECCCCEEEEEECCCCcEEEEEC-CCcce-EEEEeCCCeE-EEEE-CCCEEEEEC
Confidence            4455555667899999985 6777666 6788999995 455554433 24456 8999999998 8887 56899999 


Q ss_pred             cCC-cEEEEeccCCCcccCCccEEEcCCCcEEEEeCCCCCCcccccccccccCCCceEEEEeCCCCeeEEeeccccccce
Q 026118           78 EEG-VTVLVSQFNGSQLRFANDVIEASDGSLYFTVSSTKFTPAEYYLDLVSGEPHGVLLKYDPSTNQTSLVLDGLYFANG  156 (243)
Q Consensus        78 ~~g-~~~~~~~~~~~~~~~~~~l~~d~~G~l~v~~~~~~~~~~~~~~~~~~~~~~g~v~~~~~~~~~~~~~~~~~~~~~g  156 (243)
                      .++ .+.+...........++++++|++|++|+++....           .....++||+++ + ++++.+......+++
T Consensus       117 ~~g~~~~~~~~~~~~~~~~~~~i~~d~~G~l~v~~~~~~-----------~~~~~~~l~~~~-~-g~~~~~~~~~~~~~~  183 (326)
T 2ghs_A          117 ATGVLTLHAELESDLPGNRSNDGRMHPSGALWIGTMGRK-----------AETGAGSIYHVA-K-GKVTKLFADISIPNS  183 (326)
T ss_dssp             TTCCEEEEECSSTTCTTEEEEEEEECTTSCEEEEEEETT-----------CCTTCEEEEEEE-T-TEEEEEEEEESSEEE
T ss_pred             CCCcEEEEeeCCCCCCCCCCCCEEECCCCCEEEEeCCCc-----------CCCCceEEEEEe-C-CcEEEeeCCCcccCC
Confidence            566 55554322222234678999999999999864210           011346899999 4 777766555567899


Q ss_pred             EEEcCCCCEEEEEEcCCCeEEEEEee--cC-CCcceEEecc--CCCCCCCceEECCCCCEEEEEecC
Q 026118          157 VALSEDERFLVVCESWKFRCVKHFLK--VS-GRTDREIFID--NLPGGPDNVNLARDGSFWISIIKM  218 (243)
Q Consensus       157 i~~~~dg~~l~v~~~~~~~i~~~~~~--~~-~~~~~~~~~~--~~~~~~~~i~~d~~G~lwv~~~~~  218 (243)
                      +++++||+.||+++...+.|++|+.+  ++ .+...+.+..  ...+.|+++++|++|+||++++.+
T Consensus       184 i~~s~dg~~lyv~~~~~~~I~~~d~~~~~Gl~~~~~~~~~~~~~~~~~p~gi~~d~~G~lwva~~~~  250 (326)
T 2ghs_A          184 ICFSPDGTTGYFVDTKVNRLMRVPLDARTGLPTGKAEVFIDSTGIKGGMDGSVCDAEGHIWNARWGE  250 (326)
T ss_dssp             EEECTTSCEEEEEETTTCEEEEEEBCTTTCCBSSCCEEEEECTTSSSEEEEEEECTTSCEEEEEETT
T ss_pred             eEEcCCCCEEEEEECCCCEEEEEEcccccCCcccCceEEEECCCCCCCCCeeEECCCCCEEEEEeCC
Confidence            99999999999998888899999986  33 3333333322  234578999999999999998754

>2dg1_A DRP35, lactonase; beta propeller, hydrolase; 1.72A {Staphylococcus aureus} SCOP: b.68.6.1 PDB: 2dg0_A 2dso_A

Probab=99.84  E-value=1.7e-18  Score=140.72  Aligned_cols=195  Identities=21%  Similarity=0.296  Sum_probs=139.5

Q ss_pred             cCCcccEEEcCCCcEEEEe-CCCcEEEEcc-CCceeEec-ccCCccccceEEccCCCEEEEEeCCC-----cEEEEe-cC
Q 026118            9 VNHPEDVSVDGNGVLYTAT-GDGWIKRMHP-NGTWEDWH-QVGSQSLLGLTTTKENNVIIVCDSQQ-----GLLKVS-EE   79 (243)
Q Consensus         9 ~~~p~~i~~d~~g~l~~~~-~~~~i~~~~~-~g~~~~~~-~~~~~~~~~i~~~~~g~l~~v~~~~~-----gl~~~~-~~   79 (243)
                      ...|++++++++|+||++. .+++|+++++ .++...+. .....+. +++++++|++ |++....     +|++++ .+
T Consensus        44 ~~~~~~~~~~~~g~l~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~-~i~~~~dg~l-~v~~~~~~~~~~~i~~~d~~~  121 (333)
T 2dg1_A           44 GLQLEGLNFDRQGQLFLLDVFEGNIFKINPETKEIKRPFVSHKANPA-AIKIHKDGRL-FVCYLGDFKSTGGIFAATENG  121 (333)
T ss_dssp             CCCEEEEEECTTSCEEEEETTTCEEEEECTTTCCEEEEEECSSSSEE-EEEECTTSCE-EEEECTTSSSCCEEEEECTTS
T ss_pred             CccccCcEECCCCCEEEEECCCCEEEEEeCCCCcEEEEeeCCCCCcc-eEEECCCCcE-EEEeCCCCCCCceEEEEeCCC
Confidence            5678999999999999765 6788999995 56665543 2234566 9999999998 8887654     799999 55


Q ss_pred             C-cEEEEeccCCCcccCCccEEEcCCCcEEEEeCCCCCCcccccccccccCCCceEEEEeCCCCeeEEeeccccccceEE
Q 026118           80 G-VTVLVSQFNGSQLRFANDVIEASDGSLYFTVSSTKFTPAEYYLDLVSGEPHGVLLKYDPSTNQTSLVLDGLYFANGVA  158 (243)
Q Consensus        80 g-~~~~~~~~~~~~~~~~~~l~~d~~G~l~v~~~~~~~~~~~~~~~~~~~~~~g~v~~~~~~~~~~~~~~~~~~~~~gi~  158 (243)
                      + .+.+....  .....+++++++++|++|+++....           .....+.|+++++++++++.+......+++++
T Consensus       122 ~~~~~~~~~~--~~~~~~~~i~~d~~g~l~v~~~~~~-----------~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~i~  188 (333)
T 2dg1_A          122 DNLQDIIEDL--STAYCIDDMVFDSKGGFYFTDFRGY-----------STNPLGGVYYVSPDFRTVTPIIQNISVANGIA  188 (333)
T ss_dssp             CSCEEEECSS--SSCCCEEEEEECTTSCEEEEECCCB-----------TTBCCEEEEEECTTSCCEEEEEEEESSEEEEE
T ss_pred             CEEEEEEccC--ccCCcccceEECCCCCEEEEecccc-----------ccCCCceEEEEeCCCCEEEEeecCCCcccceE
Confidence            5 44333211  1234678999999999999975310           01124689999998777776655556789999


Q ss_pred             EcCCCCEEEEEEcCCCeEEEEEeecC--CCcce--EEecc-CCCCCCCceEECCCCCEEEEEecC
Q 026118          159 LSEDERFLVVCESWKFRCVKHFLKVS--GRTDR--EIFID-NLPGGPDNVNLARDGSFWISIIKM  218 (243)
Q Consensus       159 ~~~dg~~l~v~~~~~~~i~~~~~~~~--~~~~~--~~~~~-~~~~~~~~i~~d~~G~lwv~~~~~  218 (243)
                      ++++|+.||+++..++.|++|+.+..  .+...  ..+.. .....|++|++|++|+||+++...
T Consensus       189 ~~~dg~~l~v~~~~~~~i~~~d~~~~g~~~~~~~~~~~~~~~~~~~~~~i~~d~~G~l~v~~~~~  253 (333)
T 2dg1_A          189 LSTDEKVLWVTETTANRLHRIALEDDGVTIQPFGATIPYYFTGHEGPDSCCIDSDDNLYVAMYGQ  253 (333)
T ss_dssp             ECTTSSEEEEEEGGGTEEEEEEECTTSSSEEEEEEEEEEECCSSSEEEEEEEBTTCCEEEEEETT
T ss_pred             ECCCCCEEEEEeCCCCeEEEEEecCCCcCcccccceEEEecCCCCCCCceEECCCCCEEEEEcCC
Confidence            99999989999887889999998532  12111  11111 111368999999999999998654

>1q7f_A NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL repeat, beta-propeller, translation; 1.95A {Drosophila melanogaster} SCOP: b.68.9.1

Probab=99.82  E-value=2.9e-18  Score=136.51  Aligned_cols=187  Identities=13%  Similarity=0.181  Sum_probs=135.3

Q ss_pred             ccccCCcccEEEcCCCcEEEEe-CCCcEEEEccCCceeE-eccc------CCccccceEE-ccCCCEEEEEeC--CCcEE
Q 026118            6 EGIVNHPEDVSVDGNGVLYTAT-GDGWIKRMHPNGTWED-WHQV------GSQSLLGLTT-TKENNVIIVCDS--QQGLL   74 (243)
Q Consensus         6 ~g~~~~p~~i~~d~~g~l~~~~-~~~~i~~~~~~g~~~~-~~~~------~~~~~~~i~~-~~~g~l~~v~~~--~~gl~   74 (243)
                      ++.+..|.+|+++++|+||+++ .+++|.+++++++... +...      ...|. ++++ +++|++ |+++.  ...|.
T Consensus        26 ~g~~~~p~~v~~~~~g~l~v~~~~~~~i~~~d~~g~~~~~~~~~~~~~~~~~~p~-~i~~~~~~g~l-~v~~~~~~~~i~  103 (286)
T 1q7f_A           26 EGQFTEPSGVAVNAQNDIIVADTNNHRIQIFDKEGRFKFQFGECGKRDSQLLYPN-RVAVVRNSGDI-IVTERSPTHQIQ  103 (286)
T ss_dssp             TTCBSCEEEEEECTTCCEEEEEGGGTEEEEECTTSCEEEEECCBSSSTTCBSSEE-EEEEETTTTEE-EEEECGGGCEEE
T ss_pred             CCccCCCceEEECCCCCEEEEECCCCEEEEECCCCcEEEEecccCCCcccccCce-EEEEEcCCCeE-EEEcCCCCCEEE
Confidence            4567899999999999999997 6788999997776443 3211      13566 8999 578888 99985  45788


Q ss_pred             EEecCC-cEEEEeccCCCcccCCccEEEcCCCcEEEEeCCCCCCcccccccccccCCCceEEEEeCCCCeeEEee--ccc
Q 026118           75 KVSEEG-VTVLVSQFNGSQLRFANDVIEASDGSLYFTVSSTKFTPAEYYLDLVSGEPHGVLLKYDPSTNQTSLVL--DGL  151 (243)
Q Consensus        75 ~~~~~g-~~~~~~~~~~~~~~~~~~l~~d~~G~l~v~~~~~~~~~~~~~~~~~~~~~~g~v~~~~~~~~~~~~~~--~~~  151 (243)
                      +++.++ .....   .......|.+++++++|++|+++..                 .+.|+++++++.....+.  ...
T Consensus       104 ~~d~~g~~~~~~---~~~~~~~~~~i~~~~~g~l~v~~~~-----------------~~~i~~~~~~g~~~~~~~~~~~~  163 (286)
T 1q7f_A          104 IYNQYGQFVRKF---GATILQHPRGVTVDNKGRIIVVECK-----------------VMRVIIFDQNGNVLHKFGCSKHL  163 (286)
T ss_dssp             EECTTSCEEEEE---CTTTCSCEEEEEECTTSCEEEEETT-----------------TTEEEEECTTSCEEEEEECTTTC
T ss_pred             EECCCCcEEEEe---cCccCCCceEEEEeCCCCEEEEECC-----------------CCEEEEEcCCCCEEEEeCCCCcc
Confidence            888656 32211   1122356889999999999999643                 358999998744444443  234


Q ss_pred             cccceEEEcCCCCEEEEEEcCCCeEEEEEeecCCCcceEEecc-CCCCCCCceEECCCCCEEEEEecC
Q 026118          152 YFANGVALSEDERFLVVCESWKFRCVKHFLKVSGRTDREIFID-NLPGGPDNVNLARDGSFWISIIKM  218 (243)
Q Consensus       152 ~~~~gi~~~~dg~~l~v~~~~~~~i~~~~~~~~~~~~~~~~~~-~~~~~~~~i~~d~~G~lwv~~~~~  218 (243)
                      ..|++|+++++|+ +|+++..++.|.+|+.++.   ....+.. .....|.+|++|++|+||+++...
T Consensus       164 ~~p~~i~~~~~g~-l~v~~~~~~~i~~~~~~g~---~~~~~~~~g~~~~p~~i~~d~~G~l~v~~~~~  227 (286)
T 1q7f_A          164 EFPNGVVVNDKQE-IFISDNRAHCVKVFNYEGQ---YLRQIGGEGITNYPIGVGINSNGEILIADNHN  227 (286)
T ss_dssp             SSEEEEEECSSSE-EEEEEGGGTEEEEEETTCC---EEEEESCTTTSCSEEEEEECTTCCEEEEECSS
T ss_pred             CCcEEEEECCCCC-EEEEECCCCEEEEEcCCCC---EEEEEccCCccCCCcEEEECCCCCEEEEeCCC
Confidence            5789999999998 9999988899999997542   2222321 112468999999999999998764

>4hw6_A Hypothetical protein, IPT/TIG domain protein; putative carbohydrate bindning two domains protein, IPT/TIG (PF01833), 6-beta-propeller; HET: MSE; 1.70A {Bacteroides ovatus}

Probab=99.82  E-value=1.3e-18  Score=146.79  Aligned_cols=187  Identities=16%  Similarity=0.118  Sum_probs=139.2

Q ss_pred             ccCCcccEEEcCC---CcEEEEeCCCcEEEEcc-CCceeEecccCCccccceEEccCCCEEEEEeCC-----CcEEEEec
Q 026118            8 IVNHPEDVSVDGN---GVLYTATGDGWIKRMHP-NGTWEDWHQVGSQSLLGLTTTKENNVIIVCDSQ-----QGLLKVSE   78 (243)
Q Consensus         8 ~~~~p~~i~~d~~---g~l~~~~~~~~i~~~~~-~g~~~~~~~~~~~~~~~i~~~~~g~l~~v~~~~-----~gl~~~~~   78 (243)
                      .|..|.+|++|++   |+||+++..++|+++++ ++++..+......|. +|+++++|++ |+++..     .+++.++.
T Consensus       137 ~~~~P~gvavd~~s~~g~Lyv~D~~~~I~~id~~~g~v~~~~~~~~~P~-giavd~dG~l-yVad~~~~~~~~gv~~~~~  214 (433)
T 4hw6_A          137 AFDNIWRMMFDPNSNYDDLYWVGQRDAFRHVDFVNQYVDIKTTNIGQCA-DVNFTLNGDM-VVVDDQSSDTNTGIYLFTR  214 (433)
T ss_dssp             CCSCCCEEEECTTTTTCEEEEECBTSCEEEEETTTTEEEEECCCCSCEE-EEEECTTCCE-EEEECCSCTTSEEEEEECG
T ss_pred             ccCCCceEEEccccCCCEEEEEeCCCCEEEEECCCCEEEEeecCCCCcc-EEEECCCCCE-EEEcCCCCcccceEEEEEC
Confidence            6889999999974   89999985589999996 788877765556788 9999999996 999863     35777773


Q ss_pred             -CCcE---EEEeccCCCcccCCccEEEcC-CCcEEEEeCCCCCCcccccccccccCCCceEEEEeCCCCee-EEeec--c
Q 026118           79 -EGVT---VLVSQFNGSQLRFANDVIEAS-DGSLYFTVSSTKFTPAEYYLDLVSGEPHGVLLKYDPSTNQT-SLVLD--G  150 (243)
Q Consensus        79 -~g~~---~~~~~~~~~~~~~~~~l~~d~-~G~l~v~~~~~~~~~~~~~~~~~~~~~~g~v~~~~~~~~~~-~~~~~--~  150 (243)
                       .+..   .+.      ....|+++++++ +|+||+++..                 .+.|+++++++++. +.+..  .
T Consensus       215 ~~~~~~~~~~~------~~~~P~giavd~~~G~lyv~d~~-----------------~~~V~~~d~~~g~~~~~~~~~~~  271 (433)
T 4hw6_A          215 ASGFTERLSLC------NARGAKTCAVHPQNGKIYYTRYH-----------------HAMISSYDPATGTLTEEEVMMDT  271 (433)
T ss_dssp             GGTTCCEEEEE------ECSSBCCCEECTTTCCEEECBTT-----------------CSEEEEECTTTCCEEEEEEECSC
T ss_pred             CCCeecccccc------ccCCCCEEEEeCCCCeEEEEECC-----------------CCEEEEEECCCCeEEEEEeccCC
Confidence             3322   221      246788999999 8999999753                 45899999987776 33322  2


Q ss_pred             ccccceEEEcCCCCEEEEEEcCCCeEEEEEeec--CCCcceEEecc--C------------CCCCCCceEE---------
Q 026118          151 LYFANGVALSEDERFLVVCESWKFRCVKHFLKV--SGRTDREIFID--N------------LPGGPDNVNL---------  205 (243)
Q Consensus       151 ~~~~~gi~~~~dg~~l~v~~~~~~~i~~~~~~~--~~~~~~~~~~~--~------------~~~~~~~i~~---------  205 (243)
                      ...+.+|+++++|++||+++..+++|++++++.  ..+.....+..  .            ....|.+|++         
T Consensus       272 ~~~~~~ia~dpdG~~LYvad~~~~~I~~~~~d~~~~~~~~~~~~ag~~g~~g~~dg~~~~a~~~~P~giav~~n~~y~~d  351 (433)
T 4hw6_A          272 KGSNFHIVWHPTGDWAYIIYNGKHCIYRVDYNRETGKLAVPYIVCGQHSSPGWVDGMGTGARLWGPNQGIFVKNEAYAGE  351 (433)
T ss_dssp             CSSCEEEEECTTSSEEEEEETTTTEEEEEEBCTTTCCBCCCEEEEECTTCCCCBCEEGGGSBCSSEEEEEEEECGGGTTS
T ss_pred             CCCcccEEEeCCCCEEEEEeCCCCEEEEEeCCCCCcccCcEEEEEecCCCCccCCCcccceEEcCCccEEEEcccccccc
Confidence            344567999999999999999999999999873  22322223221  1            1235888999         


Q ss_pred             CCCCCEEEEEecCC
Q 026118          206 ARDGSFWISIIKMD  219 (243)
Q Consensus       206 d~~G~lwv~~~~~~  219 (243)
                      |.+|+|||++..++
T Consensus       352 d~~g~lyvaD~~n~  365 (433)
T 4hw6_A          352 EDEYDFYFCDRDSH  365 (433)
T ss_dssp             SCCEEEEEEETTTT
T ss_pred             CCCCcEEEEECCCC
Confidence            99999999987653

>1rwi_B Serine/threonine-protein kinase PKND; beta propeller, structural genomics, PSI, protein structure initiative; 1.80A {Mycobacterium tuberculosis} SCOP: b.68.9.1 PDB: 1rwl_A

Probab=99.82  E-value=6.4e-18  Score=133.17  Aligned_cols=186  Identities=16%  Similarity=0.216  Sum_probs=133.7

Q ss_pred             ccCCcccEEEcCCCcEEEEeCCCcEEEEccCCceeE-eccc-CCccccceEEccCCCEEEEEeCC-CcEEEEec-CCcEE
Q 026118            8 IVNHPEDVSVDGNGVLYTATGDGWIKRMHPNGTWED-WHQV-GSQSLLGLTTTKENNVIIVCDSQ-QGLLKVSE-EGVTV   83 (243)
Q Consensus         8 ~~~~p~~i~~d~~g~l~~~~~~~~i~~~~~~g~~~~-~~~~-~~~~~~~i~~~~~g~l~~v~~~~-~gl~~~~~-~g~~~   83 (243)
                      .+..|.+|++|++|+||+++.+++|+++++++.... +... ...|. +|+++++|++ |+++.. ..|++++. +....
T Consensus        65 ~~~~p~~i~~~~~g~l~v~~~~~~i~~~d~~~~~~~~~~~~~~~~p~-~i~~~~~g~l-~v~~~~~~~i~~~~~~~~~~~  142 (270)
T 1rwi_B           65 GLYQPQGLAVDGAGTVYVTDFNNRVVTLAAGSNNQTVLPFDGLNYPE-GLAVDTQGAV-YVADRGNNRVVKLAAGSKTQT  142 (270)
T ss_dssp             SCCSCCCEEECTTCCEEEEETTTEEEEECTTCSCCEECCCCSCSSEE-EEEECTTCCE-EEEEGGGTEEEEECTTCCSCE
T ss_pred             CcCCcceeEECCCCCEEEEcCCCEEEEEeCCCceEeeeecCCcCCCc-ceEECCCCCE-EEEECCCCEEEEEECCCceeE
Confidence            356899999999999999987778999997664332 3222 14567 9999999998 998754 46888873 33222


Q ss_pred             EEeccCCCcccCCccEEEcCCCcEEEEeCCCCCCcccccccccccCCCceEEEEeCCCCeeEEee-ccccccceEEEcCC
Q 026118           84 LVSQFNGSQLRFANDVIEASDGSLYFTVSSTKFTPAEYYLDLVSGEPHGVLLKYDPSTNQTSLVL-DGLYFANGVALSED  162 (243)
Q Consensus        84 ~~~~~~~~~~~~~~~l~~d~~G~l~v~~~~~~~~~~~~~~~~~~~~~~g~v~~~~~~~~~~~~~~-~~~~~~~gi~~~~d  162 (243)
                      ...   ......|.+|+++++|++|+++..                 .+.|+++++++....... .....|.+|+++++
T Consensus       143 ~~~---~~~~~~p~~i~~~~~g~l~v~~~~-----------------~~~i~~~~~~~~~~~~~~~~~~~~p~~i~~d~~  202 (270)
T 1rwi_B          143 VLP---FTGLNDPDGVAVDNSGNVYVTDTD-----------------NNRVVKLEAESNNQVVLPFTDITAPWGIAVDEA  202 (270)
T ss_dssp             ECC---CCSCCSCCCEEECTTCCEEEEEGG-----------------GTEEEEECTTTCCEEECCCSSCCSEEEEEECTT
T ss_pred             eec---cccCCCceeEEEeCCCCEEEEECC-----------------CCEEEEEecCCCceEeecccCCCCceEEEECCC
Confidence            211   112356889999999999999642                 358999999866544332 33467899999999


Q ss_pred             CCEEEEEEcCCCeEEEEEeecCCCcceEEeccCCCCCCCceEECCCCCEEEEEecCC
Q 026118          163 ERFLVVCESWKFRCVKHFLKVSGRTDREIFIDNLPGGPDNVNLARDGSFWISIIKMD  219 (243)
Q Consensus       163 g~~l~v~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~i~~d~~G~lwv~~~~~~  219 (243)
                      |+ ||+++..++.|.+++.++...   ..........|.++++|++|+||+++...+
T Consensus       203 g~-l~v~~~~~~~v~~~~~~~~~~---~~~~~~~~~~p~~i~~~~~g~l~v~~~~~~  255 (270)
T 1rwi_B          203 GT-VYVTEHNTNQVVKLLAGSTTS---TVLPFTGLNTPLAVAVDSDRTVYVADRGND  255 (270)
T ss_dssp             CC-EEEEETTTSCEEEECTTCSCC---EECCCCSCSCEEEEEECTTCCEEEEEGGGT
T ss_pred             CC-EEEEECCCCcEEEEcCCCCcc---eeeccCCCCCceeEEECCCCCEEEEECCCC
Confidence            96 999998888999998765321   112111124688999999999999987654

>1rwi_B Serine/threonine-protein kinase PKND; beta propeller, structural genomics, PSI, protein structure initiative; 1.80A {Mycobacterium tuberculosis} SCOP: b.68.9.1 PDB: 1rwl_A

Probab=99.81  E-value=8.4e-18  Score=132.47  Aligned_cols=181  Identities=18%  Similarity=0.249  Sum_probs=128.3

Q ss_pred             CcccEEEcCCCcEEE-Ee-CCCcEEEEccCCc-eeEeccc-CCccccceEEccCCCEEEEEeCCCcEEEEecCC--cEEE
Q 026118           11 HPEDVSVDGNGVLYT-AT-GDGWIKRMHPNGT-WEDWHQV-GSQSLLGLTTTKENNVIIVCDSQQGLLKVSEEG--VTVL   84 (243)
Q Consensus        11 ~p~~i~~d~~g~l~~-~~-~~~~i~~~~~~g~-~~~~~~~-~~~~~~~i~~~~~g~l~~v~~~~~gl~~~~~~g--~~~~   84 (243)
                      .|.+|++|++|+||+ ++ .+++|++++..+. ...+... ...|. +|+++++|++ |+++...+|++++.++  ...+
T Consensus        25 ~p~~i~~~~~g~l~v~~~~~~~~i~~~~~~~~~~~~~~~~~~~~p~-~i~~~~~g~l-~v~~~~~~i~~~d~~~~~~~~~  102 (270)
T 1rwi_B           25 SPSGVAVDSAGNVYVTSEGMYGRVVKLATGSTGTTVLPFNGLYQPQ-GLAVDGAGTV-YVTDFNNRVVTLAAGSNNQTVL  102 (270)
T ss_dssp             CEEEEEECTTCCEEEEECSSSCEEEEECC-----EECCCCSCCSCC-CEEECTTCCE-EEEETTTEEEEECTTCSCCEEC
T ss_pred             CccceEECCCCCEEEEccCCCCcEEEecCCCcccceEeeCCcCCcc-eeEECCCCCE-EEEcCCCEEEEEeCCCceEeee
Confidence            999999999999999 85 6788999985443 2222221 24567 9999999998 9998756799999544  3322


Q ss_pred             EeccCCCcccCCccEEEcCCCcEEEEeCCCCCCcccccccccccCCCceEEEEeCCCCeeEEe-eccccccceEEEcCCC
Q 026118           85 VSQFNGSQLRFANDVIEASDGSLYFTVSSTKFTPAEYYLDLVSGEPHGVLLKYDPSTNQTSLV-LDGLYFANGVALSEDE  163 (243)
Q Consensus        85 ~~~~~~~~~~~~~~l~~d~~G~l~v~~~~~~~~~~~~~~~~~~~~~~g~v~~~~~~~~~~~~~-~~~~~~~~gi~~~~dg  163 (243)
                      .    ......|.+++++++|++|+++..                 .+.|++++..+...... ......|++|+++++|
T Consensus       103 ~----~~~~~~p~~i~~~~~g~l~v~~~~-----------------~~~i~~~~~~~~~~~~~~~~~~~~p~~i~~~~~g  161 (270)
T 1rwi_B          103 P----FDGLNYPEGLAVDTQGAVYVADRG-----------------NNRVVKLAAGSKTQTVLPFTGLNDPDGVAVDNSG  161 (270)
T ss_dssp             C----CCSCSSEEEEEECTTCCEEEEEGG-----------------GTEEEEECTTCCSCEECCCCSCCSCCCEEECTTC
T ss_pred             e----cCCcCCCcceEECCCCCEEEEECC-----------------CCEEEEEECCCceeEeeccccCCCceeEEEeCCC
Confidence            1    112356889999999999999642                 35799998765443322 2334578999999999


Q ss_pred             CEEEEEEcCCCeEEEEEeecCCCcceEEeccCCCCCCCceEECCCCCEEEEEecC
Q 026118          164 RFLVVCESWKFRCVKHFLKVSGRTDREIFIDNLPGGPDNVNLARDGSFWISIIKM  218 (243)
Q Consensus       164 ~~l~v~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~i~~d~~G~lwv~~~~~  218 (243)
                      + +|+++..++.|.+++.++...   ..........|.+|++|++|+||+++...
T Consensus       162 ~-l~v~~~~~~~i~~~~~~~~~~---~~~~~~~~~~p~~i~~d~~g~l~v~~~~~  212 (270)
T 1rwi_B          162 N-VYVTDTDNNRVVKLEAESNNQ---VVLPFTDITAPWGIAVDEAGTVYVTEHNT  212 (270)
T ss_dssp             C-EEEEEGGGTEEEEECTTTCCE---EECCCSSCCSEEEEEECTTCCEEEEETTT
T ss_pred             C-EEEEECCCCEEEEEecCCCce---EeecccCCCCceEEEECCCCCEEEEECCC
Confidence            8 999998888999998765321   11111122468999999999999998654

>2qc5_A Streptogramin B lactonase; beta propeller, lyase; 1.80A {Staphylococcus cohnii}

Probab=99.81  E-value=1.6e-17  Score=132.46  Aligned_cols=184  Identities=13%  Similarity=0.153  Sum_probs=136.9

Q ss_pred             ccCCcccEEEcCCCcEEEEe-CCCcEEEEccCCceeEeccc--CCccccceEEccCCCEEEEEeCC-CcEEEEecCC-cE
Q 026118            8 IVNHPEDVSVDGNGVLYTAT-GDGWIKRMHPNGTWEDWHQV--GSQSLLGLTTTKENNVIIVCDSQ-QGLLKVSEEG-VT   82 (243)
Q Consensus         8 ~~~~p~~i~~d~~g~l~~~~-~~~~i~~~~~~g~~~~~~~~--~~~~~~~i~~~~~g~l~~v~~~~-~gl~~~~~~g-~~   82 (243)
                      +...|.+|++|++|+||+++ .+++|.++++++++..+...  ...+. +|+++++|++ |+++.. .+|++++.++ ..
T Consensus        18 ~~~~p~~i~~d~~g~l~v~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~-~i~~~~~g~l-~v~~~~~~~v~~~d~~g~~~   95 (300)
T 2qc5_A           18 PDSGPYGITSSEDGKVWFTQHKANKISSLDQSGRIKEFEVPTPDAKVM-CLIVSSLGDI-WFTENGANKIGKLSKKGGFT   95 (300)
T ss_dssp             TTCCEEEEEECTTSCEEEEETTTTEEEEECTTSCEEEEECSSTTCCEE-EEEECTTSCE-EEEETTTTEEEEECTTSCEE
T ss_pred             CCCCcceeeECCCCCEEEEcCCCCeEEEECCCCceEEEECCCCCCcce-eEEECCCCCE-EEEecCCCeEEEECCCCCeE
Confidence            36789999999999999998 57889999976777665432  24567 8999999998 998864 5699999447 54


Q ss_pred             EEEeccCCCcccCCccEEEcCCCcEEEEeCCCCCCcccccccccccCCCceEEEEeCCCCeeEEee--ccccccceEEEc
Q 026118           83 VLVSQFNGSQLRFANDVIEASDGSLYFTVSSTKFTPAEYYLDLVSGEPHGVLLKYDPSTNQTSLVL--DGLYFANGVALS  160 (243)
Q Consensus        83 ~~~~~~~~~~~~~~~~l~~d~~G~l~v~~~~~~~~~~~~~~~~~~~~~~g~v~~~~~~~~~~~~~~--~~~~~~~gi~~~  160 (243)
                      .+... .  ....+.+++++++|++|+++..                 .+.|++++++ ++...+.  .....|++++++
T Consensus        96 ~~~~~-~--~~~~~~~i~~~~~g~l~v~~~~-----------------~~~i~~~~~~-g~~~~~~~~~~~~~~~~i~~d  154 (300)
T 2qc5_A           96 EYPLP-Q--PDSGPYGITEGLNGDIWFTQLN-----------------GDRIGKLTAD-GTIYEYDLPNKGSYPAFITLG  154 (300)
T ss_dssp             EEECS-S--TTCCEEEEEECSTTCEEEEETT-----------------TTEEEEECTT-SCEEEEECSSTTCCEEEEEEC
T ss_pred             EecCC-C--CCCCCccceECCCCCEEEEccC-----------------CCeEEEECCC-CCEEEccCCCCCCCceeEEEC
Confidence            33321 1  1256889999999999999643                 3589999998 7666442  235678999999


Q ss_pred             CCCCEEEEEEcCCCeEEEEEeecCCCcceEEec-cCCCCCCCceEECCCCCEEEEEecCC
Q 026118          161 EDERFLVVCESWKFRCVKHFLKVSGRTDREIFI-DNLPGGPDNVNLARDGSFWISIIKMD  219 (243)
Q Consensus       161 ~dg~~l~v~~~~~~~i~~~~~~~~~~~~~~~~~-~~~~~~~~~i~~d~~G~lwv~~~~~~  219 (243)
                      ++|+ +|+++..++.|++++.++ ..   ..+. ......|.+|++|++|+||+++...+
T Consensus       155 ~~g~-l~v~~~~~~~i~~~~~~g-~~---~~~~~~~~~~~~~~i~~d~~g~l~v~~~~~~  209 (300)
T 2qc5_A          155 SDNA-LWFTENQNNSIGRITNTG-KL---EEYPLPTNAAAPVGITSGNDGALWFVEIMGN  209 (300)
T ss_dssp             TTSS-EEEEETTTTEEEEECTTC-CE---EEEECSSTTCCEEEEEECTTSSEEEEETTTT
T ss_pred             CCCC-EEEEecCCCeEEEECCCC-cE---EEeeCCCCCCCcceEEECCCCCEEEEccCCC
Confidence            9999 999988788999998732 22   2221 12234688999999999999986543

>3hrp_A Uncharacterized protein; NP_812590.1, structural genomics protein of unknown function structural genomics; HET: MSE; 1.70A {Bacteroides thetaiotaomicron vpi-5482}

Probab=99.81  E-value=1.3e-17  Score=139.84  Aligned_cols=188  Identities=14%  Similarity=0.106  Sum_probs=133.6

Q ss_pred             ccccCCcccEEEcCCCcEEEEe-CCCcEEEEccC-CceeEecccCCccccceEEccCCCEEEEEeCCC--cEEEEe-cCC
Q 026118            6 EGIVNHPEDVSVDGNGVLYTAT-GDGWIKRMHPN-GTWEDWHQVGSQSLLGLTTTKENNVIIVCDSQQ--GLLKVS-EEG   80 (243)
Q Consensus         6 ~g~~~~p~~i~~d~~g~l~~~~-~~~~i~~~~~~-g~~~~~~~~~~~~~~~i~~~~~g~l~~v~~~~~--gl~~~~-~~g   80 (243)
                      ++.+..|.+|++|++|+||+++ .+++|++++++ +++..+... .... .++++++|+.||+++...  .|++++ ..+
T Consensus       127 ~a~~~~P~~la~d~~g~lyv~d~~~~~I~~id~~~g~~~~~~~~-~~~~-~ia~~~~g~~l~~~d~~~~~~I~~~d~~~~  204 (409)
T 3hrp_A          127 SAKFKYMWGIAAVGNNTVLAYQRDDPRVRLISVDDNKVTTVHPG-FKGG-KPAVTKDKQRVYSIGWEGTHTVYVYMKASG  204 (409)
T ss_dssp             TCCCCCEEEEEECSTTEEEEEETTTTEEEEEETTTTEEEEEEET-CCBC-BCEECTTSSEEEEEBSSTTCEEEEEEGGGT
T ss_pred             HcccCCceEEEEeCCCCEEEEecCCCcEEEEECCCCEEEEeecc-CCCC-ceeEecCCCcEEEEecCCCceEEEEEcCCC
Confidence            4467899999999999999998 56889999965 566655443 2223 388999998778888644  689998 444


Q ss_pred             -c-EEEEeccCCCcccCCccEEEcC-CCcEEEEeCCCCCCcccccccccccCCCceEEEEeCCCCeeEEe----eccc--
Q 026118           81 -V-TVLVSQFNGSQLRFANDVIEAS-DGSLYFTVSSTKFTPAEYYLDLVSGEPHGVLLKYDPSTNQTSLV----LDGL--  151 (243)
Q Consensus        81 -~-~~~~~~~~~~~~~~~~~l~~d~-~G~l~v~~~~~~~~~~~~~~~~~~~~~~g~v~~~~~~~~~~~~~----~~~~--  151 (243)
                       . ..+.. ........|+++++++ +|+||+++.                  .+.|++++++++....+    ....  
T Consensus       205 ~~~~~~g~-~~~~~~~~p~~iav~p~~g~lyv~d~------------------~~~I~~~d~~~~~~~~~~~~~~~g~~~  265 (409)
T 3hrp_A          205 WAPTRIGQ-LGSTFSGKIGAVALDETEEWLYFVDS------------------NKNFGRFNVKTQEVTLIKQLELSGSLG  265 (409)
T ss_dssp             TCEEEEEE-CCTTSCSCCCBCEECTTSSEEEEECT------------------TCEEEEEETTTCCEEEEEECCCCSCCC
T ss_pred             ceeEEeee-ccchhcCCcEEEEEeCCCCeEEEEEC------------------CCcEEEEECCCCCEEEEecccccCCCC
Confidence             3 22311 1111246788999999 789999742                  35899999987765554    2211  


Q ss_pred             cccc-eEEEcCCCCEEEEEEcCCCeEEEEEeecCCCcceEEeccC--------------CCCCCCceEECCCCCEEEEEe
Q 026118          152 YFAN-GVALSEDERFLVVCESWKFRCVKHFLKVSGRTDREIFIDN--------------LPGGPDNVNLARDGSFWISII  216 (243)
Q Consensus       152 ~~~~-gi~~~~dg~~l~v~~~~~~~i~~~~~~~~~~~~~~~~~~~--------------~~~~~~~i~~d~~G~lwv~~~  216 (243)
                      ..|. +|++++++..||+++..+++|++++.++.    ...+...              ....|.+|++|++|+||+++.
T Consensus       266 ~~P~~~ia~~p~~g~lyv~d~~~~~I~~~~~~g~----~~~~~g~~~~~g~~dg~~~~~~~~~P~gia~d~dG~lyvad~  341 (409)
T 3hrp_A          266 TNPGPYLIYYFVDSNFYMSDQNLSSVYKITPDGE----CEWFCGSATQKTVQDGLREEALFAQPNGMTVDEDGNFYIVDG  341 (409)
T ss_dssp             CSSCCEEEEETTTTEEEEEETTTTEEEEECTTCC----EEEEEECTTCCSCBCEEGGGCBCSSEEEEEECTTCCEEEEET
T ss_pred             CCccccEEEeCCCCEEEEEeCCCCEEEEEecCCC----EEEEEeCCCCCCcCCCcccccEeCCCeEEEEeCCCCEEEEeC
Confidence            2244 99999976669999999999999987653    2222111              123589999999999999987


Q ss_pred             -cC
Q 026118          217 -KM  218 (243)
Q Consensus       217 -~~  218 (243)
                       ..
T Consensus       342 ~~~  344 (409)
T 3hrp_A          342 FKG  344 (409)
T ss_dssp             TTT
T ss_pred             CCC
Confidence             44

>2z2n_A Virginiamycin B lyase; seven-bladed beta-propeller, antibiotic resistance, E mechanism, virginiamycin B hydrolase streptogramin; HET: MSE; 1.65A {Staphylococcus aureus} PDB: 2z2o_A 2z2p_A*

Probab=99.80  E-value=2.2e-17  Score=131.53  Aligned_cols=183  Identities=13%  Similarity=0.206  Sum_probs=135.4

Q ss_pred             ccCCcccEEEcCCCcEEEEeC-CCcEEEEccCCceeEeccc--CCccccceEEccCCCEEEEEeCC-CcEEEEecCC-cE
Q 026118            8 IVNHPEDVSVDGNGVLYTATG-DGWIKRMHPNGTWEDWHQV--GSQSLLGLTTTKENNVIIVCDSQ-QGLLKVSEEG-VT   82 (243)
Q Consensus         8 ~~~~p~~i~~d~~g~l~~~~~-~~~i~~~~~~g~~~~~~~~--~~~~~~~i~~~~~g~l~~v~~~~-~gl~~~~~~g-~~   82 (243)
                      +...|.+|++|++|+||+++. +++|+++++++++..+...  ...+. +|+++++|++ |+++.. .+|++++.++ .+
T Consensus        13 ~~~~~~~i~~d~~g~l~v~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~-~i~~~~~g~l-~v~~~~~~~i~~~~~~g~~~   90 (299)
T 2z2n_A           13 QDTGPYGITVSDKGKVWITQHKANMISCINLDGKITEYPLPTPDAKVM-CLTISSDGEV-WFTENAANKIGRITKKGIIK   90 (299)
T ss_dssp             SSCCEEEEEECTTSCEEEEETTTTEEEEECTTCCEEEEECSSTTCCEE-EEEECTTSCE-EEEETTTTEEEEECTTSCEE
T ss_pred             cCCCccceEECCCCCEEEEecCCCcEEEEcCCCCeEEecCCcccCcee-eEEECCCCCE-EEeCCCCCeEEEECCCCcEE
Confidence            356899999999999999985 6889999976777665422  34567 8999999998 998864 5699999556 54


Q ss_pred             EEEeccCCCcccCCccEEEcCCCcEEEEeCCCCCCcccccccccccCCCceEEEEeCCCCeeEEee--ccccccceEEEc
Q 026118           83 VLVSQFNGSQLRFANDVIEASDGSLYFTVSSTKFTPAEYYLDLVSGEPHGVLLKYDPSTNQTSLVL--DGLYFANGVALS  160 (243)
Q Consensus        83 ~~~~~~~~~~~~~~~~l~~d~~G~l~v~~~~~~~~~~~~~~~~~~~~~~g~v~~~~~~~~~~~~~~--~~~~~~~gi~~~  160 (243)
                      .+...   .....+.+++++++|++|+++..                 .+.|+++++ +++...+.  .....+++++++
T Consensus        91 ~~~~~---~~~~~~~~i~~~~~g~l~v~~~~-----------------~~~i~~~d~-~g~~~~~~~~~~~~~~~~i~~~  149 (299)
T 2z2n_A           91 EYTLP---NPDSAPYGITEGPNGDIWFTEMN-----------------GNRIGRITD-DGKIREYELPNKGSYPSFITLG  149 (299)
T ss_dssp             EEECS---STTCCEEEEEECTTSCEEEEETT-----------------TTEEEEECT-TCCEEEEECSSTTCCEEEEEEC
T ss_pred             EEeCC---CcCCCceeeEECCCCCEEEEecC-----------------CceEEEECC-CCCEEEecCCCCCCCCceEEEc
Confidence            44321   12346889999999999998643                 358999999 46665543  234568999999


Q ss_pred             CCCCEEEEEEcCCCeEEEEEeecCCCcceEEe-ccCCCCCCCceEECCCCCEEEEEecC
Q 026118          161 EDERFLVVCESWKFRCVKHFLKVSGRTDREIF-IDNLPGGPDNVNLARDGSFWISIIKM  218 (243)
Q Consensus       161 ~dg~~l~v~~~~~~~i~~~~~~~~~~~~~~~~-~~~~~~~~~~i~~d~~G~lwv~~~~~  218 (243)
                      ++|+ +|+++...+.|++++. .+.   ...+ .......|.+|++|++|+||+++...
T Consensus       150 ~~g~-l~v~~~~~~~i~~~~~-~g~---~~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~  203 (299)
T 2z2n_A          150 SDNA-LWFTENQNNAIGRITE-SGD---ITEFKIPTPASGPVGITKGNDDALWFVEIIG  203 (299)
T ss_dssp             TTSC-EEEEETTTTEEEEECT-TCC---EEEEECSSTTCCEEEEEECTTSSEEEEETTT
T ss_pred             CCCC-EEEEeCCCCEEEEEcC-CCc---EEEeeCCCCCCcceeEEECCCCCEEEEccCC
Confidence            9998 9999877789999987 322   2222 11223468899999999999998643

>2qc5_A Streptogramin B lactonase; beta propeller, lyase; 1.80A {Staphylococcus cohnii}

Probab=99.80  E-value=2.7e-17  Score=131.12  Aligned_cols=181  Identities=12%  Similarity=0.152  Sum_probs=134.6

Q ss_pred             cCCcccEEEcCCCcEEEEeC-CCcEEEEccCCceeEeccc--CCccccceEEccCCCEEEEEeC-CCcEEEEecCC-cEE
Q 026118            9 VNHPEDVSVDGNGVLYTATG-DGWIKRMHPNGTWEDWHQV--GSQSLLGLTTTKENNVIIVCDS-QQGLLKVSEEG-VTV   83 (243)
Q Consensus         9 ~~~p~~i~~d~~g~l~~~~~-~~~i~~~~~~g~~~~~~~~--~~~~~~~i~~~~~g~l~~v~~~-~~gl~~~~~~g-~~~   83 (243)
                      ...|.+|++|++|++|+++. +++|++++++++...+...  ...+. +++++++|++ |+++. ..+|++++.++ ...
T Consensus        61 ~~~~~~i~~~~~g~l~v~~~~~~~v~~~d~~g~~~~~~~~~~~~~~~-~i~~~~~g~l-~v~~~~~~~i~~~~~~g~~~~  138 (300)
T 2qc5_A           61 DAKVMCLIVSSLGDIWFTENGANKIGKLSKKGGFTEYPLPQPDSGPY-GITEGLNGDI-WFTQLNGDRIGKLTADGTIYE  138 (300)
T ss_dssp             TCCEEEEEECTTSCEEEEETTTTEEEEECTTSCEEEEECSSTTCCEE-EEEECSTTCE-EEEETTTTEEEEECTTSCEEE
T ss_pred             CCcceeEEECCCCCEEEEecCCCeEEEECCCCCeEEecCCCCCCCCc-cceECCCCCE-EEEccCCCeEEEECCCCCEEE
Confidence            46799999999999999984 6789999977877655432  24567 8999999998 99886 35789999547 443


Q ss_pred             EEeccCCCcccCCccEEEcCCCcEEEEeCCCCCCcccccccccccCCCceEEEEeCCCCeeEEee--ccccccceEEEcC
Q 026118           84 LVSQFNGSQLRFANDVIEASDGSLYFTVSSTKFTPAEYYLDLVSGEPHGVLLKYDPSTNQTSLVL--DGLYFANGVALSE  161 (243)
Q Consensus        84 ~~~~~~~~~~~~~~~l~~d~~G~l~v~~~~~~~~~~~~~~~~~~~~~~g~v~~~~~~~~~~~~~~--~~~~~~~gi~~~~  161 (243)
                      +...   .....+.+++++++|++|+++..                 .+.|++++++ ++...+.  .....|.+|++++
T Consensus       139 ~~~~---~~~~~~~~i~~d~~g~l~v~~~~-----------------~~~i~~~~~~-g~~~~~~~~~~~~~~~~i~~d~  197 (300)
T 2qc5_A          139 YDLP---NKGSYPAFITLGSDNALWFTENQ-----------------NNSIGRITNT-GKLEEYPLPTNAAAPVGITSGN  197 (300)
T ss_dssp             EECS---STTCCEEEEEECTTSSEEEEETT-----------------TTEEEEECTT-CCEEEEECSSTTCCEEEEEECT
T ss_pred             ccCC---CCCCCceeEEECCCCCEEEEecC-----------------CCeEEEECCC-CcEEEeeCCCCCCCcceEEECC
Confidence            3211   12356889999999999999643                 3579999994 6665543  2345788999999


Q ss_pred             CCCEEEEEEcCCCeEEEEEeecCCCcceEEe-ccCCCCCCCceEECCCCCEEEEEec
Q 026118          162 DERFLVVCESWKFRCVKHFLKVSGRTDREIF-IDNLPGGPDNVNLARDGSFWISIIK  217 (243)
Q Consensus       162 dg~~l~v~~~~~~~i~~~~~~~~~~~~~~~~-~~~~~~~~~~i~~d~~G~lwv~~~~  217 (243)
                      +|+ ||+++...+.|.+++.++ .   ...+ .......|.+|++|++|+||+++..
T Consensus       198 ~g~-l~v~~~~~~~i~~~~~~g-~---~~~~~~~~~~~~~~~i~~d~~g~l~v~~~~  249 (300)
T 2qc5_A          198 DGA-LWFVEIMGNKIGRITTTG-E---ISEYDIPTPNARPHAITAGKNSEIWFTEWG  249 (300)
T ss_dssp             TSS-EEEEETTTTEEEEECTTC-C---EEEEECSSTTCCEEEEEECSTTCEEEEETT
T ss_pred             CCC-EEEEccCCCEEEEEcCCC-c---EEEEECCCCCCCceEEEECCCCCEEEeccC
Confidence            998 999988788999998732 2   2222 1122346889999999999999865

>1q7f_A NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL repeat, beta-propeller, translation; 1.95A {Drosophila melanogaster} SCOP: b.68.9.1

Probab=99.79  E-value=9.9e-18  Score=133.43  Aligned_cols=184  Identities=12%  Similarity=0.179  Sum_probs=131.6

Q ss_pred             ccCCcccEEE-cCCCcEEEEeC--CCcEEEEccCCceeE-eccc-CCccccceEEccCCCEEEEEeCC-CcEEEEecCC-
Q 026118            8 IVNHPEDVSV-DGNGVLYTATG--DGWIKRMHPNGTWED-WHQV-GSQSLLGLTTTKENNVIIVCDSQ-QGLLKVSEEG-   80 (243)
Q Consensus         8 ~~~~p~~i~~-d~~g~l~~~~~--~~~i~~~~~~g~~~~-~~~~-~~~~~~~i~~~~~g~l~~v~~~~-~gl~~~~~~g-   80 (243)
                      .+..|.+|++ +++|+||+++.  ++.|++++++++... +... ...|. +|+++++|++ |+++.. ..|++++.++ 
T Consensus        75 ~~~~p~~i~~~~~~g~l~v~~~~~~~~i~~~d~~g~~~~~~~~~~~~~~~-~i~~~~~g~l-~v~~~~~~~i~~~~~~g~  152 (286)
T 1q7f_A           75 QLLYPNRVAVVRNSGDIIVTERSPTHQIQIYNQYGQFVRKFGATILQHPR-GVTVDNKGRI-IVVECKVMRVIIFDQNGN  152 (286)
T ss_dssp             CBSSEEEEEEETTTTEEEEEECGGGCEEEEECTTSCEEEEECTTTCSCEE-EEEECTTSCE-EEEETTTTEEEEECTTSC
T ss_pred             cccCceEEEEEcCCCeEEEEcCCCCCEEEEECCCCcEEEEecCccCCCce-EEEEeCCCCE-EEEECCCCEEEEEcCCCC
Confidence            4568999999 57999999983  788999997776543 3221 23567 9999999998 998754 4688888655 


Q ss_pred             -cEEEEeccCCCcccCCccEEEcCCCcEEEEeCCCCCCcccccccccccCCCceEEEEeCCCCeeEEeecc--ccccceE
Q 026118           81 -VTVLVSQFNGSQLRFANDVIEASDGSLYFTVSSTKFTPAEYYLDLVSGEPHGVLLKYDPSTNQTSLVLDG--LYFANGV  157 (243)
Q Consensus        81 -~~~~~~~~~~~~~~~~~~l~~d~~G~l~v~~~~~~~~~~~~~~~~~~~~~~g~v~~~~~~~~~~~~~~~~--~~~~~gi  157 (243)
                       ...+...   .....|.+|+++++|++|+++..                 .+.|+++++++..+..+...  ...|.+|
T Consensus       153 ~~~~~~~~---~~~~~p~~i~~~~~g~l~v~~~~-----------------~~~i~~~~~~g~~~~~~~~~g~~~~p~~i  212 (286)
T 1q7f_A          153 VLHKFGCS---KHLEFPNGVVVNDKQEIFISDNR-----------------AHCVKVFNYEGQYLRQIGGEGITNYPIGV  212 (286)
T ss_dssp             EEEEEECT---TTCSSEEEEEECSSSEEEEEEGG-----------------GTEEEEEETTCCEEEEESCTTTSCSEEEE
T ss_pred             EEEEeCCC---CccCCcEEEEECCCCCEEEEECC-----------------CCEEEEEcCCCCEEEEEccCCccCCCcEE
Confidence             3333211   12356889999999999999642                 35899999975444444322  3678999


Q ss_pred             EEcCCCCEEEEEEcCCC-eEEEEEeecCCCcceEEeccC-CCCCCCceEECCCCCEEEEEec
Q 026118          158 ALSEDERFLVVCESWKF-RCVKHFLKVSGRTDREIFIDN-LPGGPDNVNLARDGSFWISIIK  217 (243)
Q Consensus       158 ~~~~dg~~l~v~~~~~~-~i~~~~~~~~~~~~~~~~~~~-~~~~~~~i~~d~~G~lwv~~~~  217 (243)
                      +++++|+ +|+++..++ .|.+|+.++..   ...+... ....|.+++++++|+||+++..
T Consensus       213 ~~d~~G~-l~v~~~~~~~~i~~~~~~g~~---~~~~~~~~~~~~~~~i~~~~~g~l~vs~~~  270 (286)
T 1q7f_A          213 GINSNGE-ILIADNHNNFNLTIFTQDGQL---ISALESKVKHAQCFDVALMDDGSVVLASKD  270 (286)
T ss_dssp             EECTTCC-EEEEECSSSCEEEEECTTSCE---EEEEEESSCCSCEEEEEEETTTEEEEEETT
T ss_pred             EECCCCC-EEEEeCCCCEEEEEECCCCCE---EEEEcccCCCCcceeEEECCCCcEEEECCC
Confidence            9999998 999988776 99999865422   2222211 2234778999999999999643

>3tc9_A Hypothetical hydrolase; 6-bladed beta-propeller, immunoglobulin-like, structural GEN joint center for structural genomics, JCSG; 2.23A {Bacteroides thetaiotaomicron}

Probab=99.79  E-value=9.3e-18  Score=141.58  Aligned_cols=188  Identities=13%  Similarity=0.107  Sum_probs=137.1

Q ss_pred             ccCCcccEEEcC--CCcEEEEeCCCcEEEEccCC-ceeEecccCCccccceEEccCCCEEEEEeCCC-----cEEEEecC
Q 026118            8 IVNHPEDVSVDG--NGVLYTATGDGWIKRMHPNG-TWEDWHQVGSQSLLGLTTTKENNVIIVCDSQQ-----GLLKVSEE   79 (243)
Q Consensus         8 ~~~~p~~i~~d~--~g~l~~~~~~~~i~~~~~~g-~~~~~~~~~~~~~~~i~~~~~g~l~~v~~~~~-----gl~~~~~~   79 (243)
                      .+..|.+|++|+  +|.||+++..++|++++.++ ++..+......|. +|+++++|+.||+++...     .++.++++
T Consensus       135 ~~~~P~~lavdp~~~g~Lyv~d~~~~I~~id~~~~~v~~~~~~~~~P~-~ia~d~~G~~lyvad~~~~~~~~~v~~~~~~  213 (430)
T 3tc9_A          135 GFGGAVWLSFDPKNHNHLYLVGEQHPTRLIDFEKEYVSTVYSGLSKVR-TICWTHEADSMIITNDQNNNDRPNNYILTRE  213 (430)
T ss_dssp             CCSCCCEEEEETTEEEEEEEEEBTEEEEEEETTTTEEEEEECCCSCEE-EEEECTTSSEEEEEECCSCTTSEEEEEEEGG
T ss_pred             CCCCCCEEEECCCCCCeEEEEeCCCcEEEEECCCCEEEEEecCCCCcc-eEEEeCCCCEEEEEeCCCCcccceEEEEeCC
Confidence            578999999996  58999998658899999654 5665555556688 999999999559998632     36666644


Q ss_pred             C-cE---EEEeccCCCcccCCccEEEcC-CCcEEEEeCCCCCCcccccccccccCCCceEEEEeCCCCeeEEee--cccc
Q 026118           80 G-VT---VLVSQFNGSQLRFANDVIEAS-DGSLYFTVSSTKFTPAEYYLDLVSGEPHGVLLKYDPSTNQTSLVL--DGLY  152 (243)
Q Consensus        80 g-~~---~~~~~~~~~~~~~~~~l~~d~-~G~l~v~~~~~~~~~~~~~~~~~~~~~~g~v~~~~~~~~~~~~~~--~~~~  152 (243)
                      + +.   .+.      ....|.++++++ +|+||+++..                 .++|++++++++....+.  ....
T Consensus       214 g~~~~~~~l~------~~~~p~giavdp~~g~lyv~d~~-----------------~~~V~~~~~~~~~~~~~~~~~~~~  270 (430)
T 3tc9_A          214 SGFKVITELT------KGQNCNGAETHPINGELYFNSWN-----------------AGQVFRYDFTTQETTPLFTIQDSG  270 (430)
T ss_dssp             GTSCSEEEEE------ECSSCCCEEECTTTCCEEEEETT-----------------TTEEEEEETTTTEEEEEEECSSSS
T ss_pred             Cceeeeeeec------cCCCceEEEEeCCCCEEEEEECC-----------------CCEEEEEECCCCcEEEEEEcCCCC
Confidence            4 32   222      235788999999 8999999754                 358999999977663332  2345


Q ss_pred             ccceEEEcCCCCEEEEEEcCCCeEEEEEeecC--CCcceEEeccC--------------CCCCCC-ceEE--------CC
Q 026118          153 FANGVALSEDERFLVVCESWKFRCVKHFLKVS--GRTDREIFIDN--------------LPGGPD-NVNL--------AR  207 (243)
Q Consensus       153 ~~~gi~~~~dg~~l~v~~~~~~~i~~~~~~~~--~~~~~~~~~~~--------------~~~~~~-~i~~--------d~  207 (243)
                      .|++|+++++|++||+++..++.|++++.++.  .+.....+...              ....|. ++++        |+
T Consensus       271 ~P~gia~~pdG~~lyv~d~~~~~I~~~~~d~~~~~~~~~~~~ag~~g~~g~~dg~~~~a~~~~P~~gv~v~~~~y~~~D~  350 (430)
T 3tc9_A          271 WEFHIQFHPSGNYAYIVVVNQHYILRSDYDWKTKRLTTPYIVCGQQGAKDWVDGVGKKARMHAPRQGTFVKNPAYKGSSD  350 (430)
T ss_dssp             CCEEEEECTTSSEEEEEETTTTEEEEEEEETTTTEECCCEEEEECTTCBCCBCEEGGGCBBSSEEEEEEEECGGGTTSSC
T ss_pred             cceeEEEcCCCCEEEEEECCCCEEEEEeCCcccccccceEEEeccCCCCCCCCCCCcceEeCCCcceEEEccccccccCC
Confidence            79999999999999999999999999998852  22222222211              112477 7887        56


Q ss_pred             CCCEEEEEecCC
Q 026118          208 DGSFWISIIKMD  219 (243)
Q Consensus       208 ~G~lwv~~~~~~  219 (243)
                      +|+|||++..++
T Consensus       351 ~g~lyvaD~~n~  362 (430)
T 3tc9_A          351 EYDFYFCDRENH  362 (430)
T ss_dssp             CEEEEEEEGGGT
T ss_pred             CCeEEEEECCCc
Confidence            799999997654

>2z2n_A Virginiamycin B lyase; seven-bladed beta-propeller, antibiotic resistance, E mechanism, virginiamycin B hydrolase streptogramin; HET: MSE; 1.65A {Staphylococcus aureus} PDB: 2z2o_A 2z2p_A*

Probab=99.79  E-value=4.1e-17  Score=129.98  Aligned_cols=181  Identities=12%  Similarity=0.186  Sum_probs=134.4

Q ss_pred             cCCcccEEEcCCCcEEEEeC-CCcEEEEccCCceeEecc--cCCccccceEEccCCCEEEEEeCC-CcEEEEecCC-cEE
Q 026118            9 VNHPEDVSVDGNGVLYTATG-DGWIKRMHPNGTWEDWHQ--VGSQSLLGLTTTKENNVIIVCDSQ-QGLLKVSEEG-VTV   83 (243)
Q Consensus         9 ~~~p~~i~~d~~g~l~~~~~-~~~i~~~~~~g~~~~~~~--~~~~~~~~i~~~~~g~l~~v~~~~-~gl~~~~~~g-~~~   83 (243)
                      ...|.+|++|++|.+|++.. +++|+++++++++..+..  ....+. +|+++++|++ |+++.. .++++++.++ ...
T Consensus        56 ~~~~~~i~~~~~g~l~v~~~~~~~i~~~~~~g~~~~~~~~~~~~~~~-~i~~~~~g~l-~v~~~~~~~i~~~d~~g~~~~  133 (299)
T 2z2n_A           56 DAKVMCLTISSDGEVWFTENAANKIGRITKKGIIKEYTLPNPDSAPY-GITEGPNGDI-WFTEMNGNRIGRITDDGKIRE  133 (299)
T ss_dssp             TCCEEEEEECTTSCEEEEETTTTEEEEECTTSCEEEEECSSTTCCEE-EEEECTTSCE-EEEETTTTEEEEECTTCCEEE
T ss_pred             cCceeeEEECCCCCEEEeCCCCCeEEEECCCCcEEEEeCCCcCCCce-eeEECCCCCE-EEEecCCceEEEECCCCCEEE
Confidence            35799999999999999984 678999997777665543  234567 8999999998 998753 5788998655 443


Q ss_pred             EEeccCCCcccCCccEEEcCCCcEEEEeCCCCCCcccccccccccCCCceEEEEeCCCCeeEEee--ccccccceEEEcC
Q 026118           84 LVSQFNGSQLRFANDVIEASDGSLYFTVSSTKFTPAEYYLDLVSGEPHGVLLKYDPSTNQTSLVL--DGLYFANGVALSE  161 (243)
Q Consensus        84 ~~~~~~~~~~~~~~~l~~d~~G~l~v~~~~~~~~~~~~~~~~~~~~~~g~v~~~~~~~~~~~~~~--~~~~~~~gi~~~~  161 (243)
                      +...   .....+.+++++++|++|+++..                 .+.|+++++ ++++..+.  .....|.+|++++
T Consensus       134 ~~~~---~~~~~~~~i~~~~~g~l~v~~~~-----------------~~~i~~~~~-~g~~~~~~~~~~~~~~~~i~~~~  192 (299)
T 2z2n_A          134 YELP---NKGSYPSFITLGSDNALWFTENQ-----------------NNAIGRITE-SGDITEFKIPTPASGPVGITKGN  192 (299)
T ss_dssp             EECS---STTCCEEEEEECTTSCEEEEETT-----------------TTEEEEECT-TCCEEEEECSSTTCCEEEEEECT
T ss_pred             ecCC---CCCCCCceEEEcCCCCEEEEeCC-----------------CCEEEEEcC-CCcEEEeeCCCCCCcceeEEECC
Confidence            3221   12346789999999999998642                 358999999 57766542  2345688999999


Q ss_pred             CCCEEEEEEcCCCeEEEEEeecCCCcceEEe-ccCCCCCCCceEECCCCCEEEEEec
Q 026118          162 DERFLVVCESWKFRCVKHFLKVSGRTDREIF-IDNLPGGPDNVNLARDGSFWISIIK  217 (243)
Q Consensus       162 dg~~l~v~~~~~~~i~~~~~~~~~~~~~~~~-~~~~~~~~~~i~~d~~G~lwv~~~~  217 (243)
                      +|+ +|+++...+.|.+++. .+.   ...+ .......|.+|++|++|+||+++..
T Consensus       193 ~g~-l~v~~~~~~~i~~~~~-~g~---~~~~~~~~~~~~~~~i~~~~~g~l~v~~~~  244 (299)
T 2z2n_A          193 DDA-LWFVEIIGNKIGRITT-SGE---ITEFKIPTPNARPHAITAGAGIDLWFTEWG  244 (299)
T ss_dssp             TSS-EEEEETTTTEEEEECT-TCC---EEEEECSSTTCCEEEEEECSTTCEEEEETT
T ss_pred             CCC-EEEEccCCceEEEECC-CCc---EEEEECCCCCCCceeEEECCCCCEEEeccC
Confidence            998 9999877889999987 322   2222 1122346889999999999999854

>3v64_C Agrin; beta propeller, laminin-G, signaling, protein binding; HET: NAG; 2.85A {Rattus norvegicus}

Probab=99.79  E-value=4.6e-17  Score=133.79  Aligned_cols=185  Identities=14%  Similarity=0.151  Sum_probs=135.4

Q ss_pred             cCCcccEEEcC-CCcEEEEe-CCCcEEEEccCCc-eeEec-ccCCccccceEEcc-CCCEEEEEeCC-CcEEEEecCC--
Q 026118            9 VNHPEDVSVDG-NGVLYTAT-GDGWIKRMHPNGT-WEDWH-QVGSQSLLGLTTTK-ENNVIIVCDSQ-QGLLKVSEEG--   80 (243)
Q Consensus         9 ~~~p~~i~~d~-~g~l~~~~-~~~~i~~~~~~g~-~~~~~-~~~~~~~~~i~~~~-~g~l~~v~~~~-~gl~~~~~~g--   80 (243)
                      +..|.+|++|+ ++.||+++ ..+.|++++.++. ...+. .....|. +|++|+ .|++ |+++.. ..|.+++.+|  
T Consensus        72 ~~~~~~l~~d~~~~~ly~~D~~~~~I~r~~~~g~~~~~~~~~~~~~p~-glavd~~~g~l-y~~d~~~~~I~~~~~dG~~  149 (349)
T 3v64_C           72 LENAIALDFHHRRELVFWSDVTLDRILRANLNGSNVEEVVSTGLESPG-GLAVDWVHDKL-YWTDSGTSRIEVANLDGAH  149 (349)
T ss_dssp             CSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEECSSCSCCC-EEEEETTTTEE-EEEETTTTEEEEEETTSCS
T ss_pred             CCceEEEEEeccccEEEEEeccCCceEEEecCCCCceEEEeCCCCCcc-EEEEecCCCeE-EEEcCCCCeEEEEcCCCCc
Confidence            67899999995 78999998 6788999996654 33322 2235678 999996 4556 888865 4588888555  


Q ss_pred             cEEEEeccCCCcccCCccEEEcC-CCcEEEEeCCCCCCcccccccccccCCCceEEEEeCCCCeeEEee-ccccccceEE
Q 026118           81 VTVLVSQFNGSQLRFANDVIEAS-DGSLYFTVSSTKFTPAEYYLDLVSGEPHGVLLKYDPSTNQTSLVL-DGLYFANGVA  158 (243)
Q Consensus        81 ~~~~~~~~~~~~~~~~~~l~~d~-~G~l~v~~~~~~~~~~~~~~~~~~~~~~g~v~~~~~~~~~~~~~~-~~~~~~~gi~  158 (243)
                      .+.+..    .....|++|++|| +|.+|+++..                ..+.|+++++++...+.+. .....|+||+
T Consensus       150 ~~~l~~----~~l~~P~~iavdp~~g~ly~td~~----------------~~~~I~r~~~dG~~~~~~~~~~~~~PnGla  209 (349)
T 3v64_C          150 RKVLLW----QSLEKPRAIALHPMEGTIYWTDWG----------------NTPRIEASSMDGSGRRIIADTHLFWPNGLT  209 (349)
T ss_dssp             CEEEEC----TTCSCEEEEEEETTTTEEEEEECS----------------SSCEEEEEETTSCSCEESCCSSCSCEEEEE
T ss_pred             eEEEEe----CCCCCcceEEEecCcCeEEEeccC----------------CCCEEEEEeCCCCCcEEEEECCCCCcceEE
Confidence            344332    1245789999998 6789999754                1268999999855444443 4577899999


Q ss_pred             EcCCCCEEEEEEcCCCeEEEEEeecCCCcceEEeccCCCCCCCceEECCCCCEEEEEecCC
Q 026118          159 LSEDERFLVVCESWKFRCVKHFLKVSGRTDREIFIDNLPGGPDNVNLARDGSFWISIIKMD  219 (243)
Q Consensus       159 ~~~dg~~l~v~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~i~~d~~G~lwv~~~~~~  219 (243)
                      ++++++.|||++...+.|.++++++.   ..+.+.......|++|+++ +++||++++..+
T Consensus       210 ~d~~~~~lY~aD~~~~~I~~~~~dG~---~~~~~~~~~~~~P~giav~-~~~ly~td~~~~  266 (349)
T 3v64_C          210 IDYAGRRMYWVDAKHHVIERANLDGS---HRKAVISQGLPHPFAITVF-EDSLYWTDWHTK  266 (349)
T ss_dssp             EETTTTEEEEEETTTTEEEEEETTSC---SCEEEECSSCSSEEEEEEE-TTEEEEEETTTT
T ss_pred             EeCCCCEEEEEECCCCEEEEEeCCCC---ceEEEEeCCCCCceEEEEE-CCEEEEecCCCC
Confidence            99888889999999999999998763   2233333335689999995 568999987654

>3v65_B Low-density lipoprotein receptor-related protein; laminin-G, beta-propeller, protein binding; 3.30A {Rattus norvegicus}

Probab=99.78  E-value=4.4e-17  Score=135.68  Aligned_cols=185  Identities=14%  Similarity=0.147  Sum_probs=134.8

Q ss_pred             cCCcccEEEcC-CCcEEEEe-CCCcEEEEccCCc-eeEec-ccCCccccceEEccC-CCEEEEEeCC-CcEEEEecCC--
Q 026118            9 VNHPEDVSVDG-NGVLYTAT-GDGWIKRMHPNGT-WEDWH-QVGSQSLLGLTTTKE-NNVIIVCDSQ-QGLLKVSEEG--   80 (243)
Q Consensus         9 ~~~p~~i~~d~-~g~l~~~~-~~~~i~~~~~~g~-~~~~~-~~~~~~~~~i~~~~~-g~l~~v~~~~-~gl~~~~~~g--   80 (243)
                      +..|.+|++|+ ++.||+++ ..++|++++.++. ...+. .....|. +|++|+. +++ |+++.. ..|.+++.+|  
T Consensus       115 ~~~~~gl~~d~~~~~ly~~D~~~~~I~r~~~~g~~~~~~~~~~~~~p~-glavd~~~g~l-Y~~d~~~~~I~~~~~dg~~  192 (386)
T 3v65_B          115 LENAIALDFHHRRELVFWSDVTLDRILRANLNGSNVEEVVSTGLESPG-GLAVDWVHDKL-YWTDSGTSRIEVANLDGAH  192 (386)
T ss_dssp             CSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCCEEEEECSSCSCCC-CEEEETTTTEE-EEEETTTTEEEECBTTSCS
T ss_pred             CCccEEEEEecCCCeEEEEeCCCCcEEEEecCCCCcEEEEeCCCCCcc-EEEEEeCCCeE-EEEcCCCCeEEEEeCCCCc
Confidence            67899999995 77899998 6788999997664 33332 2234678 9999964 555 888865 4577777555  


Q ss_pred             cEEEEeccCCCcccCCccEEEcC-CCcEEEEeCCCCCCcccccccccccCCCceEEEEeCCCCeeEEee-ccccccceEE
Q 026118           81 VTVLVSQFNGSQLRFANDVIEAS-DGSLYFTVSSTKFTPAEYYLDLVSGEPHGVLLKYDPSTNQTSLVL-DGLYFANGVA  158 (243)
Q Consensus        81 ~~~~~~~~~~~~~~~~~~l~~d~-~G~l~v~~~~~~~~~~~~~~~~~~~~~~g~v~~~~~~~~~~~~~~-~~~~~~~gi~  158 (243)
                      .+.+..    .....|++|++|| +|.||+++..                ..+.|+++++++...+.+. .....|+||+
T Consensus       193 ~~~l~~----~~l~~P~giavdp~~g~ly~td~~----------------~~~~I~r~~~dG~~~~~~~~~~~~~PnGla  252 (386)
T 3v65_B          193 RKVLLW----QSLEKPRAIALHPMEGTIYWTDWG----------------NTPRIEASSMDGSGRRIIADTHLFWPNGLT  252 (386)
T ss_dssp             CEEEEC----SSCSCEEEEEEETTTTEEEEEECS----------------SSCEEEEEETTSCSCEEEECSSCSCEEEEE
T ss_pred             eEEeec----CCCCCCcEEEEEcCCCeEEEeccC----------------CCCEEEEEeCCCCCcEEEEECCCCCeeeEE
Confidence            344332    1246789999997 5789999754                1358999999855444443 4577899999


Q ss_pred             EcCCCCEEEEEEcCCCeEEEEEeecCCCcceEEeccCCCCCCCceEECCCCCEEEEEecCC
Q 026118          159 LSEDERFLVVCESWKFRCVKHFLKVSGRTDREIFIDNLPGGPDNVNLARDGSFWISIIKMD  219 (243)
Q Consensus       159 ~~~dg~~l~v~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~i~~d~~G~lwv~~~~~~  219 (243)
                      ++++++.|||++...+.|+++++++.   ..+.+.......|++|+++ +++||++++..+
T Consensus       253 vd~~~~~lY~aD~~~~~I~~~d~dG~---~~~~~~~~~~~~P~giav~-~~~ly~td~~~~  309 (386)
T 3v65_B          253 IDYAGRRMYWVDAKHHVIERANLDGS---HRKAVISQGLPHPFAITVF-EDSLYWTDWHTK  309 (386)
T ss_dssp             EEGGGTEEEEEETTTTEEEEECTTSC---SCEEEECSSCSSEEEEEEE-TTEEEEEETTTT
T ss_pred             EeCCCCEEEEEECCCCEEEEEeCCCC---eeEEEEECCCCCceEEEEE-CCEEEEeeCCCC
Confidence            99888889999999999999998763   2233333334689999995 568999887654

>2qe8_A Uncharacterized protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE UNL PG4; 1.35A {Anabaena variabilis atcc 29413}

Probab=99.78  E-value=4.3e-17  Score=133.57  Aligned_cols=200  Identities=15%  Similarity=0.155  Sum_probs=135.2

Q ss_pred             ceecccccCCcccEEEcCCCcEEEEe---CCC--cEEEEccCCceeEeccc-------CCccccceEEccCCCEEEEEeC
Q 026118            2 IKLGEGIVNHPEDVSVDGNGVLYTAT---GDG--WIKRMHPNGTWEDWHQV-------GSQSLLGLTTTKENNVIIVCDS   69 (243)
Q Consensus         2 ~~~~~g~~~~p~~i~~d~~g~l~~~~---~~~--~i~~~~~~g~~~~~~~~-------~~~~~~~i~~~~~g~l~~v~~~   69 (243)
                      +++.+.. ..|++|+++++|++|++.   .++  .|..++ ++++..+...       ...|. ++++|++|++ |+++.
T Consensus        10 ~~v~~~~-~~p~~va~~~~g~~~v~~~~~~~~~~~l~~~~-~g~~~~~p~~~~~~~~~~~~p~-gv~~d~~g~L-~v~D~   85 (343)
T 2qe8_A           10 EVVAELS-LAPGNITLTPDGRLFLSLHQFYQPEMQVAELT-QDGLIPFPPQSGNAIITFDTVL-GIKSDGNGIV-WMLDN   85 (343)
T ss_dssp             EEEEEES-SCEEEEEECTTSCEEEEECGGGCCSCSEEEEE-TTEEEESCCCCSSCCCCCSCEE-EEEECSSSEE-EEEEC
T ss_pred             EEEEEcC-CCcceEEECCCCCEEEEeCCCCCCceEEEEEC-CCCeecCCCcccCcccceeEee-EEEEcCCCcE-EEEcC
Confidence            3444443 589999999999999985   233  688887 7776654321       23577 9999999998 99885


Q ss_pred             C------CcEEEEe-cCC-cE-EEEec-cCCCcccCCccEEEcC-CCcEEEEeCCCCCCcccccccccccCCCceEEEEe
Q 026118           70 Q------QGLLKVS-EEG-VT-VLVSQ-FNGSQLRFANDVIEAS-DGSLYFTVSSTKFTPAEYYLDLVSGEPHGVLLKYD  138 (243)
Q Consensus        70 ~------~gl~~~~-~~g-~~-~~~~~-~~~~~~~~~~~l~~d~-~G~l~v~~~~~~~~~~~~~~~~~~~~~~g~v~~~~  138 (243)
                      .      ..|+++| .++ .. .+... ........++++++++ +|.+|+++++.              ...+.|+++|
T Consensus        86 g~~~~~~~~i~~~d~~tg~~~~~~~~~~~~~~~~~~~~~v~vd~~~g~~yvtd~~~--------------~~~~~i~v~d  151 (343)
T 2qe8_A           86 GNQSKSVPKLVAWDTLNNQLSRVIYLPPPITLSNSFVNDLAVDLIHNFVYISDPAP--------------DDKAALIRVD  151 (343)
T ss_dssp             HHHHTSCCEEEEEETTTTEEEEEEECCTTTSCTTCCCCEEEEETTTTEEEEEECCS--------------GGGCEEEEEE
T ss_pred             CCCcCCCCeEEEEECCCCeEEEEEECChhhcccccccceEEEecCCCEEEEEcCcc--------------CCCCeEEEEE
Confidence            4      5799999 666 33 33221 1112235678999997 47899997531              0234788888


Q ss_pred             CCCCeeEEeecc------------------------------ccccceEEEcCCCCEEEEEEcCCCeEEEEEeec---CC
Q 026118          139 PSTNQTSLVLDG------------------------------LYFANGVALSEDERFLVVCESWKFRCVKHFLKV---SG  185 (243)
Q Consensus       139 ~~~~~~~~~~~~------------------------------~~~~~gi~~~~dg~~l~v~~~~~~~i~~~~~~~---~~  185 (243)
                      +++++..++...                              ...++||++++||++||+++.....|++++.+.   ..
T Consensus       152 ~~~g~~~r~~~~~~~~~~~~~~~~~~g~~~~~~~~~g~~~~~~~~~~gia~s~dg~~ly~~~~~~~~l~~~~~~~~~~~~  231 (343)
T 2qe8_A          152 LQTGLAARVLQGYPGIAPEDIDLVIDGVPVQIGQPDGTVIRPHLGVNGIVLDAENEWLYLSPMHSTSMYRIKSADLSNLQ  231 (343)
T ss_dssp             TTTCCEEEECTTCTTTSCCSCCCEETTEECBEECTTSCEECCCCCEEEEEECTTSCEEEEEESSCSEEEEEEHHHHTCTT
T ss_pred             CCCCCEEEEecCCCcccccccceeECCEEEEeccCCCceeceecccceeEeccCCCEEEEEeCCCCeEEEEEHHHhcCCC
Confidence            876665543311                              023689999999999999998888999998641   12


Q ss_pred             CcceEEec----cCCCCCCCceEECCCCCEEEEEecCC
Q 026118          186 RTDREIFI----DNLPGGPDNVNLARDGSFWISIIKMD  219 (243)
Q Consensus       186 ~~~~~~~~----~~~~~~~~~i~~d~~G~lwv~~~~~~  219 (243)
                      +...+.+.    ....+.|++|++|++|+||++....+
T Consensus       232 ~~~~~~~~~~~~~g~~g~pdgia~d~~G~l~va~~~~~  269 (343)
T 2qe8_A          232 LTDAELGSKIERYSEKPICDGISIDKDHNIYVGDLAHS  269 (343)
T ss_dssp             CCHHHHHTTCEEEEECCSCSCEEECTTCCEEEEEGGGT
T ss_pred             CChhhhhcceEecccCCCCceEEECCCCCEEEEccCCC
Confidence            22111110    01234799999999999999987654

>3fvz_A Peptidyl-glycine alpha-amidating monooxygenase; beta propeller, lyase, peptide amidation, HG-MAD, Zn-MAD, CL PAIR of basic residues; 2.35A {Rattus norvegicus} PDB: 3fw0_A*

Probab=99.77  E-value=2.4e-17  Score=134.28  Aligned_cols=193  Identities=11%  Similarity=0.139  Sum_probs=132.3

Q ss_pred             cccccCCcccEEEcCCCcEEEEe-CCCcEEEEccCCc---eeEec---------ccCCccccceEEcc-CCCEEEEEeC-
Q 026118            5 GEGIVNHPEDVSVDGNGVLYTAT-GDGWIKRMHPNGT---WEDWH---------QVGSQSLLGLTTTK-ENNVIIVCDS-   69 (243)
Q Consensus         5 ~~g~~~~p~~i~~d~~g~l~~~~-~~~~i~~~~~~g~---~~~~~---------~~~~~~~~~i~~~~-~g~l~~v~~~-   69 (243)
                      +.+.+..|.+|++|++|+||+++ .++.|++++++++   +..+.         .....|. +|++++ +|++ |+++. 
T Consensus        86 ~~~~~~~p~gia~d~~g~l~v~d~~~~~v~~~~~~g~~~~~~~~~~~~~~g~~~~~~~~P~-~ia~~~~~g~l-yv~d~~  163 (329)
T 3fvz_A           86 GKNLFYLPHGLSIDTDGNYWVTDVALHQVFKLDPHSKEGPLLILGRSMQPGSDQNHFCQPT-DVAVEPSTGAV-FVSDGY  163 (329)
T ss_dssp             CTTTCSSEEEEEECTTSCEEEEETTTTEEEEECTTCSSCCSEEESBTTBCCCSTTCCSSEE-EEEECTTTCCE-EEEECS
T ss_pred             CCCccCCceEEEECCCCCEEEEECCCCEEEEEeCCCCeEEEEEecccCCCCCCccccCCCc-EEEEeCCCCeE-EEEeCC
Confidence            34557799999999999999998 5788999997765   23331         1123577 999999 8888 99984 


Q ss_pred             -CCcEEEEecCC-c-EEEEeccC-----CCcccCCccEEEcCC-CcEEEEeCCCCCCcccccccccccCCCceEEEEeCC
Q 026118           70 -QQGLLKVSEEG-V-TVLVSQFN-----GSQLRFANDVIEASD-GSLYFTVSSTKFTPAEYYLDLVSGEPHGVLLKYDPS  140 (243)
Q Consensus        70 -~~gl~~~~~~g-~-~~~~~~~~-----~~~~~~~~~l~~d~~-G~l~v~~~~~~~~~~~~~~~~~~~~~~g~v~~~~~~  140 (243)
                       ...|.+++.+| . ..+.....     ......|.+|+++++ |++|+++..                 .+.|.+++++
T Consensus       164 ~~~~I~~~~~~g~~~~~~~~~g~~~~~~~~~~~~p~gia~d~~~g~l~v~d~~-----------------~~~I~~~~~~  226 (329)
T 3fvz_A          164 CNSRIVQFSPSGKFVTQWGEESSGSSPRPGQFSVPHSLALVPHLDQLCVADRE-----------------NGRIQCFKTD  226 (329)
T ss_dssp             SCCEEEEECTTSCEEEEECEECCSSSCCTTEESCEEEEEEETTTTEEEEEETT-----------------TTEEEEEETT
T ss_pred             CCCeEEEEcCCCCEEEEeccCCCCCCCCCcccCCCcEEEEECCCCEEEEEECC-----------------CCEEEEEECC
Confidence             45688888666 3 33322111     123456899999998 899999754                 4589999998


Q ss_pred             CCeeEEeec---cccccceEEEcC------CCCEEEEEEcCCCeEEEEEeecCCCcceEEec--cCCCCCCCceEECCCC
Q 026118          141 TNQTSLVLD---GLYFANGVALSE------DERFLVVCESWKFRCVKHFLKVSGRTDREIFI--DNLPGGPDNVNLARDG  209 (243)
Q Consensus       141 ~~~~~~~~~---~~~~~~gi~~~~------dg~~l~v~~~~~~~i~~~~~~~~~~~~~~~~~--~~~~~~~~~i~~d~~G  209 (243)
                      ++++.....   ....+.+++++|      +|+ +|+++..+..|..++...+.+  ...+.  ......|.+|++|++|
T Consensus       227 ~G~~~~~~~~~~~~~~~~~~~~~pg~~~~~~g~-~~v~~~~~~~v~~~~~~~g~~--~~~~~~~~~~~~~p~~ia~~~dG  303 (329)
T 3fvz_A          227 TKEFVREIKHASFGRNVFAISYIPGFLFAVNGK-PYFGDQEPVQGFVMNFSSGEI--IDVFKPVRKHFDMPHDIVASEDG  303 (329)
T ss_dssp             TCCEEEEECCTTTTTCEEEEEEETTEEEEEECC-CCTTCSCCCCEEEEETTTCCE--EEEECCSSSCCSSEEEEEECTTS
T ss_pred             CCcEEEEEeccccCCCcceeeecCCEEEEeCCC-EEeccCCCcEEEEEEcCCCeE--EEEEcCCCCccCCeeEEEECCCC
Confidence            666554331   122344555655      666 666666667899988664322  22222  1233468999999999


Q ss_pred             CEEEEEecCC
Q 026118          210 SFWISIIKMD  219 (243)
Q Consensus       210 ~lwv~~~~~~  219 (243)
                      +|||++...+
T Consensus       304 ~lyvad~~~~  313 (329)
T 3fvz_A          304 TVYIGDAHTN  313 (329)
T ss_dssp             EEEEEESSSC
T ss_pred             CEEEEECCCC
Confidence            9999987654

>1npe_A Nidogen, entactin; glycoprotein, basement membrane, beta-propeller, EGF-like, structural protein; 2.30A {Mus musculus} SCOP: b.68.5.1

Probab=99.77  E-value=8.9e-17  Score=127.01  Aligned_cols=187  Identities=16%  Similarity=0.119  Sum_probs=133.1

Q ss_pred             ccCCcccEEEcC-CCcEEEEe-CCCcEEEEccCCc-eeEec-ccCCccccceEEccCCCEEEEEeCCC-cEEEEecCC--
Q 026118            8 IVNHPEDVSVDG-NGVLYTAT-GDGWIKRMHPNGT-WEDWH-QVGSQSLLGLTTTKENNVIIVCDSQQ-GLLKVSEEG--   80 (243)
Q Consensus         8 ~~~~p~~i~~d~-~g~l~~~~-~~~~i~~~~~~g~-~~~~~-~~~~~~~~~i~~~~~g~l~~v~~~~~-gl~~~~~~g--   80 (243)
                      +...|+++++|+ ++.||+++ ..+.|++++.++. ...+. .....|. +|+++++++.+|+++... .|.+++.++  
T Consensus        34 ~~~~~~gi~~d~~~~~ly~~d~~~~~I~~~~~~g~~~~~~~~~~~~~p~-~ia~d~~~~~lyv~d~~~~~I~~~~~~g~~  112 (267)
T 1npe_A           34 PAKVIIGLAFDCVDKVVYWTDISEPSIGRASLHGGEPTTIIRQDLGSPE-GIALDHLGRTIFWTDSQLDRIEVAKMDGTQ  112 (267)
T ss_dssp             EEEEEEEEEEETTTTEEEEEETTTTEEEEEESSSCCCEEEECTTCCCEE-EEEEETTTTEEEEEETTTTEEEEEETTSCS
T ss_pred             CCCcEEEEEEecCCCEEEEEECCCCEEEEEecCCCCcEEEEECCCCCcc-EEEEEecCCeEEEEECCCCEEEEEEcCCCC
Confidence            346789999997 67899998 5778999996654 33332 2224678 999998654449998654 588888544  


Q ss_pred             cEEEEeccCCCcccCCccEEEcC-CCcEEEEeCCCCCCcccccccccccCCCceEEEEeCCCCeeEEee-ccccccceEE
Q 026118           81 VTVLVSQFNGSQLRFANDVIEAS-DGSLYFTVSSTKFTPAEYYLDLVSGEPHGVLLKYDPSTNQTSLVL-DGLYFANGVA  158 (243)
Q Consensus        81 ~~~~~~~~~~~~~~~~~~l~~d~-~G~l~v~~~~~~~~~~~~~~~~~~~~~~g~v~~~~~~~~~~~~~~-~~~~~~~gi~  158 (243)
                      .+.+...    ....|+++++|+ +|++|+++..               ...+.|++++.++...+.+. .....|++|+
T Consensus       113 ~~~~~~~----~~~~P~~i~vd~~~g~lyv~~~~---------------~~~~~I~~~~~dg~~~~~~~~~~~~~P~gia  173 (267)
T 1npe_A          113 RRVLFDT----GLVNPRGIVTDPVRGNLYWTDWN---------------RDNPKIETSHMDGTNRRILAQDNLGLPNGLT  173 (267)
T ss_dssp             CEEEECS----SCSSEEEEEEETTTTEEEEEECC---------------SSSCEEEEEETTSCCCEEEECTTCSCEEEEE
T ss_pred             EEEEEEC----CCCCccEEEEeeCCCEEEEEECC---------------CCCcEEEEEecCCCCcEEEEECCCCCCcEEE
Confidence            3333321    235788999999 5889999743               12358999998854444443 4467899999


Q ss_pred             EcCCCCEEEEEEcCCCeEEEEEeecCCCcceEEeccCCCCCCCceEECCCCCEEEEEecCC
Q 026118          159 LSEDERFLVVCESWKFRCVKHFLKVSGRTDREIFIDNLPGGPDNVNLARDGSFWISIIKMD  219 (243)
Q Consensus       159 ~~~dg~~l~v~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~i~~d~~G~lwv~~~~~~  219 (243)
                      ++++++.||+++...++|.++++++.   ....+.. ....|.+|+.| +++||++++..+
T Consensus       174 ~d~~~~~lyv~d~~~~~I~~~~~~g~---~~~~~~~-~~~~P~gi~~d-~~~lyva~~~~~  229 (267)
T 1npe_A          174 FDAFSSQLCWVDAGTHRAECLNPAQP---GRRKVLE-GLQYPFAVTSY-GKNLYYTDWKTN  229 (267)
T ss_dssp             EETTTTEEEEEETTTTEEEEEETTEE---EEEEEEE-CCCSEEEEEEE-TTEEEEEETTTT
T ss_pred             EcCCCCEEEEEECCCCEEEEEecCCC---ceEEEec-CCCCceEEEEe-CCEEEEEECCCC
Confidence            99998889999999999999998652   2222322 23578999998 678999887654

>3dsm_A Uncharacterized protein bacuni_02894; seven_blated beta propeller, structural genomics, PSI-2, Pro structure initiative; 1.90A {Bacteroides uniformis}

Probab=99.76  E-value=1e-16  Score=130.53  Aligned_cols=188  Identities=12%  Similarity=0.074  Sum_probs=129.9

Q ss_pred             cCCcccEEEcCCCcEEEEe-CCCcEEEEcc-CCceeEecccCC------ccccceEEccCCCEEEEEeC--CCcEEEEe-
Q 026118            9 VNHPEDVSVDGNGVLYTAT-GDGWIKRMHP-NGTWEDWHQVGS------QSLLGLTTTKENNVIIVCDS--QQGLLKVS-   77 (243)
Q Consensus         9 ~~~p~~i~~d~~g~l~~~~-~~~~i~~~~~-~g~~~~~~~~~~------~~~~~i~~~~~g~l~~v~~~--~~gl~~~~-   77 (243)
                      ...|.+|+++++|.||+++ .++.|.++|+ ++++........      .|. +|++ .++++ |+++.  ...|..+| 
T Consensus        83 ~~~p~~i~~~~~g~lyv~~~~~~~v~~iD~~t~~~~~~i~~g~~~~~~~~p~-~i~~-~~~~l-yv~~~~~~~~v~viD~  159 (328)
T 3dsm_A           83 FTSPRYIHFLSDEKAYVTQIWDYRIFIINPKTYEITGYIECPDMDMESGSTE-QMVQ-YGKYV-YVNCWSYQNRILKIDT  159 (328)
T ss_dssp             CSSEEEEEEEETTEEEEEEBSCSEEEEEETTTTEEEEEEECTTCCTTTCBCC-CEEE-ETTEE-EEEECTTCCEEEEEET
T ss_pred             CCCCcEEEEeCCCeEEEEECCCCeEEEEECCCCeEEEEEEcCCccccCCCcc-eEEE-ECCEE-EEEcCCCCCEEEEEEC
Confidence            4689999998888999998 7889999994 556543333233      677 8888 45566 99985  45689999 


Q ss_pred             cCC-cEEEEeccCCCcccCCccEEEcCCCcEEEEeCCCCCCcccccccccccCCCceEEEEeCCCCeeEEeec--ccccc
Q 026118           78 EEG-VTVLVSQFNGSQLRFANDVIEASDGSLYFTVSSTKFTPAEYYLDLVSGEPHGVLLKYDPSTNQTSLVLD--GLYFA  154 (243)
Q Consensus        78 ~~g-~~~~~~~~~~~~~~~~~~l~~d~~G~l~v~~~~~~~~~~~~~~~~~~~~~~g~v~~~~~~~~~~~~~~~--~~~~~  154 (243)
                      .++ ......  .+   ..|.+++++++|++|+++.+.....       ......+.|+++|++++++.....  ....|
T Consensus       160 ~t~~~~~~i~--~g---~~p~~i~~~~dG~l~v~~~~~~~~~-------~~~~~~~~v~~id~~t~~v~~~~~~~~g~~p  227 (328)
T 3dsm_A          160 ETDKVVDELT--IG---IQPTSLVMDKYNKMWTITDGGYEGS-------PYGYEAPSLYRIDAETFTVEKQFKFKLGDWP  227 (328)
T ss_dssp             TTTEEEEEEE--CS---SCBCCCEECTTSEEEEEBCCBCTTC-------SSCBCCCEEEEEETTTTEEEEEEECCTTCCC
T ss_pred             CCCeEEEEEE--cC---CCccceEEcCCCCEEEEECCCccCC-------ccccCCceEEEEECCCCeEEEEEecCCCCCc
Confidence            566 322221  11   3577899999999999975410000       000113689999999888764332  13479


Q ss_pred             ceEEEcCCCCEEEEEEcCCCeEEEEEeecCCCcceEEeccCCCCCCCceEECC-CCCEEEEE
Q 026118          155 NGVALSEDERFLVVCESWKFRCVKHFLKVSGRTDREIFIDNLPGGPDNVNLAR-DGSFWISI  215 (243)
Q Consensus       155 ~gi~~~~dg~~l~v~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~i~~d~-~G~lwv~~  215 (243)
                      ++|+++++++.||+++.   .|+++|.....+... .+.......|.+|++|+ +|+|||++
T Consensus       228 ~~la~~~d~~~lyv~~~---~v~~~d~~t~~~~~~-~~~~~~~~~p~gi~vdp~~g~lyva~  285 (328)
T 3dsm_A          228 SEVQLNGTRDTLYWINN---DIWRMPVEADRVPVR-PFLEFRDTKYYGLTVNPNNGEVYVAD  285 (328)
T ss_dssp             EEEEECTTSCEEEEESS---SEEEEETTCSSCCSS-CSBCCCSSCEEEEEECTTTCCEEEEE
T ss_pred             eeEEEecCCCEEEEEcc---EEEEEECCCCceeee-eeecCCCCceEEEEEcCCCCeEEEEc
Confidence            99999999999999864   899999875443221 11111135799999997 78899998

>3sov_A LRP-6, low-density lipoprotein receptor-related protein; beta propeller, protein binding-antagonist complex; HET: NAG FUC; 1.27A {Homo sapiens} PDB: 3soq_A* 3sob_B

Probab=99.76  E-value=1.5e-16  Score=128.99  Aligned_cols=185  Identities=16%  Similarity=0.143  Sum_probs=133.7

Q ss_pred             cCCcccEEEcC-CCcEEEEe-CCCcEEEEccCCce---eEecccCCccccceEEcc-CCCEEEEEeCC-CcEEEEecCC-
Q 026118            9 VNHPEDVSVDG-NGVLYTAT-GDGWIKRMHPNGTW---EDWHQVGSQSLLGLTTTK-ENNVIIVCDSQ-QGLLKVSEEG-   80 (243)
Q Consensus         9 ~~~p~~i~~d~-~g~l~~~~-~~~~i~~~~~~g~~---~~~~~~~~~~~~~i~~~~-~g~l~~v~~~~-~gl~~~~~~g-   80 (243)
                      +..|.+|.+|+ ++.||+++ ..+.|++++.++..   .........|. ++++|+ .|++ |+++.. ..|.+++.+| 
T Consensus        34 ~~~~~~ld~d~~~~~lyw~D~~~~~I~r~~~~g~~~~~~~~~~~l~~p~-glavd~~~g~l-y~~d~~~~~I~~~~~dG~  111 (318)
T 3sov_A           34 LEDAAAVDFVFSHGLIYWSDVSEEAIKRTEFNKTESVQNVVVSGLLSPD-GLACDWLGEKL-YWTDSETNRIEVSNLDGS  111 (318)
T ss_dssp             EEEEEEEEEEGGGTEEEEEETTTTEEEEEETTSSSCCCEEEEECCSCCC-EEEEETTTTEE-EEEETTTTEEEEEETTSC
T ss_pred             CCccEEEEEEeCCCEEEEEECCCCcEEEEEccCCCceEEEEcCCCCCcc-EEEEEcCCCeE-EEEECCCCEEEEEECCCC
Confidence            56788899996 68999998 67889999966542   22222335678 999996 5566 888765 4688888555 


Q ss_pred             -cEEEEeccCCCcccCCccEEEcC-CCcEEEEeCCCCCCcccccccccccCCCceEEEEeCCCCeeEEee-ccccccceE
Q 026118           81 -VTVLVSQFNGSQLRFANDVIEAS-DGSLYFTVSSTKFTPAEYYLDLVSGEPHGVLLKYDPSTNQTSLVL-DGLYFANGV  157 (243)
Q Consensus        81 -~~~~~~~~~~~~~~~~~~l~~d~-~G~l~v~~~~~~~~~~~~~~~~~~~~~~g~v~~~~~~~~~~~~~~-~~~~~~~gi  157 (243)
                       .+.+..    .....|+++++|+ .|.+|+++.+                ..+.|+++++++...+.+. .....|+||
T Consensus       112 ~~~~l~~----~~~~~P~giavdp~~g~ly~td~~----------------~~~~I~r~~~dG~~~~~~~~~~l~~Pngl  171 (318)
T 3sov_A          112 LRKVLFW----QELDQPRAIALDPSSGFMYWTDWG----------------EVPKIERAGMDGSSRFIIINSEIYWPNGL  171 (318)
T ss_dssp             SCEEEEC----SSCSSEEEEEEEGGGTEEEEEECS----------------SSCEEEEEETTSCSCEEEECSSCSCEEEE
T ss_pred             cEEEEEe----CCCCCccEEEEeCCCCEEEEEecC----------------CCCEEEEEEcCCCCeEEEEECCCCCccEE
Confidence             444432    2245789999998 5789999743                2358999999854444443 557889999


Q ss_pred             EEcCCCCEEEEEEcCCCeEEEEEeecCCCcceEEeccCCCCCCCceEECCCCCEEEEEecCC
Q 026118          158 ALSEDERFLVVCESWKFRCVKHFLKVSGRTDREIFIDNLPGGPDNVNLARDGSFWISIIKMD  219 (243)
Q Consensus       158 ~~~~dg~~l~v~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~i~~d~~G~lwv~~~~~~  219 (243)
                      ++|++++.|||++...+.|+++++++.   ..+.+.......|.+|+++. +.+|++++..+
T Consensus       172 avd~~~~~lY~aD~~~~~I~~~d~dG~---~~~~~~~~~~~~P~glav~~-~~lywtd~~~~  229 (318)
T 3sov_A          172 TLDYEEQKLYWADAKLNFIHKSNLDGT---NRQAVVKGSLPHPFALTLFE-DILYWTDWSTH  229 (318)
T ss_dssp             EEETTTTEEEEEETTTTEEEEEETTSC---SCEEEECSCCSCEEEEEEET-TEEEEEETTTT
T ss_pred             EEeccCCEEEEEECCCCEEEEEcCCCC---ceEEEecCCCCCceEEEEeC-CEEEEEecCCC
Confidence            999988889999999999999998763   33444433456899999985 46888876544

>1ijq_A LDL receptor, low-density lipoprotein receptor; beta-propeller, lipid transport; 1.50A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1

Probab=99.76  E-value=5.3e-16  Score=125.75  Aligned_cols=185  Identities=11%  Similarity=0.104  Sum_probs=131.6

Q ss_pred             cCCcccEEEcC-CCcEEEEe-CCCcEEEEccCC----c-eeEec-ccCCccccceEEcc-CCCEEEEEeCC-CcEEEEec
Q 026118            9 VNHPEDVSVDG-NGVLYTAT-GDGWIKRMHPNG----T-WEDWH-QVGSQSLLGLTTTK-ENNVIIVCDSQ-QGLLKVSE   78 (243)
Q Consensus         9 ~~~p~~i~~d~-~g~l~~~~-~~~~i~~~~~~g----~-~~~~~-~~~~~~~~~i~~~~-~g~l~~v~~~~-~gl~~~~~   78 (243)
                      +..|.++++|+ ++.||+++ ..+.|++++.++    . ...+. .....|. +|++|+ .+++ |+++.. +.|.+++.
T Consensus        29 ~~~p~g~~~d~~~~~ly~~D~~~~~I~~~~~~g~~~~~~~~~~~~~~~~~p~-glavd~~~~~l-y~~d~~~~~I~~~~~  106 (316)
T 1ijq_A           29 LRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRDIQAPD-GLAVDWIHSNI-YWTDSVLGTVSVADT  106 (316)
T ss_dssp             CSSEEEEEEETTTTEEEEEETTTTEEEEEEC--------CEEEECSSCSCCC-EEEEETTTTEE-EEEETTTTEEEEEET
T ss_pred             CCceEEEEEEeCCCEEEEEECCCCcEEEEECCCCCCCcccEEEEeCCCCCcC-EEEEeecCCeE-EEEECCCCEEEEEeC
Confidence            67899999996 67899998 678999999655    2 22222 2224677 999996 5566 888764 46888885


Q ss_pred             CC--cEEEEeccCCCcccCCccEEEcC-CCcEEEEeCCCCCCcccccccccccCCCceEEEEeCCCCeeEEee-cccccc
Q 026118           79 EG--VTVLVSQFNGSQLRFANDVIEAS-DGSLYFTVSSTKFTPAEYYLDLVSGEPHGVLLKYDPSTNQTSLVL-DGLYFA  154 (243)
Q Consensus        79 ~g--~~~~~~~~~~~~~~~~~~l~~d~-~G~l~v~~~~~~~~~~~~~~~~~~~~~~g~v~~~~~~~~~~~~~~-~~~~~~  154 (243)
                      +|  .+.+...    ....|+++++|| +|.+|+++..                ..+.|+++++++...+.+. .....|
T Consensus       107 ~g~~~~~~~~~----~~~~P~~iavdp~~g~ly~~d~~----------------~~~~I~~~~~dG~~~~~~~~~~~~~P  166 (316)
T 1ijq_A          107 KGVKRKTLFRE----NGSKPRAIVVDPVHGFMYWTDWG----------------TPAKIKKGGLNGVDIYSLVTENIQWP  166 (316)
T ss_dssp             TSSSEEEEEEC----TTCCEEEEEEETTTTEEEEEECS----------------SSCEEEEEETTSCCEEEEECSSCSCE
T ss_pred             CCCceEEEEEC----CCCCcceEEeCCCCCEEEEEccC----------------CCCeEEEEcCCCCCeEEEEECCCCCc
Confidence            55  3443321    235788999998 6789999753                1358999999844444443 457789


Q ss_pred             ceEEEcCCCCEEEEEEcCCCeEEEEEeecCCCcceEEecc--CCCCCCCceEECCCCCEEEEEecCC
Q 026118          155 NGVALSEDERFLVVCESWKFRCVKHFLKVSGRTDREIFID--NLPGGPDNVNLARDGSFWISIIKMD  219 (243)
Q Consensus       155 ~gi~~~~dg~~l~v~~~~~~~i~~~~~~~~~~~~~~~~~~--~~~~~~~~i~~d~~G~lwv~~~~~~  219 (243)
                      +||+++++++.|||++...+.|.++++++.   ..+.+..  .....|.+|+++. ++||++++..+
T Consensus       167 ~gla~d~~~~~lY~~D~~~~~I~~~d~dg~---~~~~~~~~~~~~~~P~giav~~-~~ly~~d~~~~  229 (316)
T 1ijq_A          167 NGITLDLLSGRLYWVDSKLHSISSIDVNGG---NRKTILEDEKRLAHPFSLAVFE-DKVFWTDIINE  229 (316)
T ss_dssp             EEEEEETTTTEEEEEETTTTEEEEEETTSC---SCEEEEECTTTTSSEEEEEEET-TEEEEEETTTT
T ss_pred             eEEEEeccCCEEEEEECCCCeEEEEecCCC---ceEEEeecCCccCCcEEEEEEC-CEEEEEECCCC
Confidence            999999988889999999999999998763   2333332  2235799999984 78999886554

>4a0p_A LRP6, LRP-6, low-density lipoprotein receptor-related protein; signaling, WNT signalling, WNT3A, DKK1, MESD; HET: NAG; 1.90A {Homo sapiens} PDB: 3s2k_A* 3s8z_A* 3s8v_A*

Probab=99.73  E-value=9.4e-16  Score=134.82  Aligned_cols=186  Identities=15%  Similarity=0.070  Sum_probs=139.6

Q ss_pred             ccCCcccEEEcC-CCcEEEEe-CCCcEEEEccCCc-eeEec-ccCCccccceEEccCCCEEEEEeCCC-cEEEEecCC--
Q 026118            8 IVNHPEDVSVDG-NGVLYTAT-GDGWIKRMHPNGT-WEDWH-QVGSQSLLGLTTTKENNVIIVCDSQQ-GLLKVSEEG--   80 (243)
Q Consensus         8 ~~~~p~~i~~d~-~g~l~~~~-~~~~i~~~~~~g~-~~~~~-~~~~~~~~~i~~~~~g~l~~v~~~~~-gl~~~~~~g--   80 (243)
                      .+..|.+|++|+ ++.||+++ .+++|++++.+|. ...+. .....|. +|++|..++.||+++... .|.+++.+|  
T Consensus        35 ~~~~~~~l~~d~~~~~lywtD~~~~~I~r~~~~g~~~~~v~~~g~~~P~-GlAvD~~~~~LY~tD~~~~~I~v~~~dG~~  113 (628)
T 4a0p_A           35 GVKEASALDFDVTDNRIYWTDISLKTISRAFMNGSALEHVVEFGLDYPE-GMAVDWLGKNLYWADTGTNRIEVSKLDGQH  113 (628)
T ss_dssp             SCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEECSSCSCCC-EEEEETTTTEEEEEETTTTEEEEEETTSTT
T ss_pred             CCCceEEEEEECCCCEEEEEECCCCeEEEEECCCCCcEEEEeCCCCCcc-eEEEEeCCCEEEEEECCCCEEEEEecCCCc
Confidence            367899999996 77999998 6789999987664 33332 2235688 999996544338888654 577887555  


Q ss_pred             cEEEEeccCCCcccCCccEEEcC-CCcEEEEeCCCCCCcccccccccccCCCceEEEEeCCCCeeEEeeccccccceEEE
Q 026118           81 VTVLVSQFNGSQLRFANDVIEAS-DGSLYFTVSSTKFTPAEYYLDLVSGEPHGVLLKYDPSTNQTSLVLDGLYFANGVAL  159 (243)
Q Consensus        81 ~~~~~~~~~~~~~~~~~~l~~d~-~G~l~v~~~~~~~~~~~~~~~~~~~~~~g~v~~~~~~~~~~~~~~~~~~~~~gi~~  159 (243)
                      .+.+..    .....|.+|++|| +|.||+++.+                ..++|+++++++...+.+......|+||++
T Consensus       114 ~~~l~~----~~l~~P~~iavdp~~G~lY~tD~g----------------~~~~I~r~~~dG~~~~~l~~~~~~P~Glal  173 (628)
T 4a0p_A          114 RQVLVW----KDLDSPRALALDPAEGFMYWTEWG----------------GKPKIDRAAMDGSERTTLVPNVGRANGLTI  173 (628)
T ss_dssp             CEEEEC----SSCCCEEEEEEETTTTEEEEEECS----------------SSCEEEEEETTSCSCEEEECSCSSEEEEEE
T ss_pred             EEEEEe----CCCCCcccEEEccCCCeEEEeCCC----------------CCCEEEEEeCCCCceEEEECCCCCcceEEE
Confidence            444432    2346789999998 7899999753                245899999997666666777889999999


Q ss_pred             cCCCCEEEEEEcCCCeEEEEEeecCCCcceEEeccCCCCCCCceEECCCCCEEEEEecCC
Q 026118          160 SEDERFLVVCESWKFRCVKHFLKVSGRTDREIFIDNLPGGPDNVNLARDGSFWISIIKMD  219 (243)
Q Consensus       160 ~~dg~~l~v~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~i~~d~~G~lwv~~~~~~  219 (243)
                      |++++.|||++...+.|.++++++...   +++.. ....|.+|+++. ++||++++..+
T Consensus       174 D~~~~~LY~aD~~~~~I~~~d~dG~~~---~v~~~-~l~~P~glav~~-~~ly~tD~~~~  228 (628)
T 4a0p_A          174 DYAKRRLYWTDLDTNLIESSNMLGLNR---EVIAD-DLPHPFGLTQYQ-DYIYWTDWSRR  228 (628)
T ss_dssp             ETTTTEEEEEETTTTEEEEEETTSCSC---EEEEE-CCSCEEEEEEET-TEEEEEETTTT
T ss_pred             ccccCEEEEEECCCCEEEEEcCCCCce---EEeec-cCCCceEEEEEC-CEEEEecCCCC
Confidence            998888999999999999999987422   34432 345799999986 68999987654

>3p5b_L Low density lipoprotein receptor variant; B-propellor, convertase, hydrolase-lipid binding P complex; 3.30A {Homo sapiens} PDB: 3p5c_L

Probab=99.73  E-value=1.5e-15  Score=126.92  Aligned_cols=185  Identities=11%  Similarity=0.105  Sum_probs=131.5

Q ss_pred             cCCcccEEEcC-CCcEEEEe-CCCcEEEEccCCc-----eeE-ecccCCccccceEEcc-CCCEEEEEeCC-CcEEEEec
Q 026118            9 VNHPEDVSVDG-NGVLYTAT-GDGWIKRMHPNGT-----WED-WHQVGSQSLLGLTTTK-ENNVIIVCDSQ-QGLLKVSE   78 (243)
Q Consensus         9 ~~~p~~i~~d~-~g~l~~~~-~~~~i~~~~~~g~-----~~~-~~~~~~~~~~~i~~~~-~g~l~~v~~~~-~gl~~~~~   78 (243)
                      +..|.+|++|+ ++.||+++ ..+.|++++.++.     ... +......|. +|++|. .+++ |+++.. +.|.+++.
T Consensus       111 ~~~~~~l~~d~~~~~lywsD~~~~~I~~~~~~g~~~~~~~~~~~~~~~~~p~-glavD~~~~~l-Y~~d~~~~~I~~~~~  188 (400)
T 3p5b_L          111 LRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRDIQAPD-GLAVDWIHSNI-YWTDSVLGTVSVADT  188 (400)
T ss_dssp             CSCEEEEEEETTTTEEEEEETTTTEEEEEEC------CCCEEEECSSCSCEE-EEEEETTTTEE-EEEETTTTEEEEECT
T ss_pred             cCcceEEeeeeccCceEEEecCCCeEEEEEcccCCCCCcceEEEeCCCCCcc-cEEEEecCCce-EEEECCCCeEEEEeC
Confidence            67899999996 77899998 6788999986552     222 222335678 999997 5666 888865 45777775


Q ss_pred             CC--cEEEEeccCCCcccCCccEEEcC-CCcEEEEeCCCCCCcccccccccccCCCceEEEEeCCCCeeEEee-cccccc
Q 026118           79 EG--VTVLVSQFNGSQLRFANDVIEAS-DGSLYFTVSSTKFTPAEYYLDLVSGEPHGVLLKYDPSTNQTSLVL-DGLYFA  154 (243)
Q Consensus        79 ~g--~~~~~~~~~~~~~~~~~~l~~d~-~G~l~v~~~~~~~~~~~~~~~~~~~~~~g~v~~~~~~~~~~~~~~-~~~~~~  154 (243)
                      +|  .+.+..    .....|.+|++|| .|.||+++.+                ..+.|+++++++...+.+. .....|
T Consensus       189 ~g~~~~~l~~----~~~~~P~~iavdp~~g~ly~td~~----------------~~~~I~~~~~dG~~~~~~~~~~l~~P  248 (400)
T 3p5b_L          189 KGVKRKTLFR----ENGSKPRAIVVDPVHGFMYWTDWG----------------TPAKIKKGGLNGVDIYSLVTENIQWP  248 (400)
T ss_dssp             TTCSEEEEEE----CSSCCEEEEEEETTTTEEEEEECS----------------SSCCEEEEETTSCSCEEEECSSCSCE
T ss_pred             CCCceEEEEe----CCCCCcceEEEecccCeEEEEeCC----------------CCCEEEEEeCCCCccEEEEECCCCce
Confidence            55  333332    1245688999998 6789999754                2357999999855544443 456899


Q ss_pred             ceEEEcCCCCEEEEEEcCCCeEEEEEeecCCCcceEEecc--CCCCCCCceEECCCCCEEEEEecCC
Q 026118          155 NGVALSEDERFLVVCESWKFRCVKHFLKVSGRTDREIFID--NLPGGPDNVNLARDGSFWISIIKMD  219 (243)
Q Consensus       155 ~gi~~~~dg~~l~v~~~~~~~i~~~~~~~~~~~~~~~~~~--~~~~~~~~i~~d~~G~lwv~~~~~~  219 (243)
                      +||++|++++.|||++...+.|.++++++.   ..+.+..  .....|.+|+++. ++||++++..+
T Consensus       249 ~glavd~~~~~lY~aD~~~~~I~~~d~dG~---~~~~~~~~~~~l~~P~gl~v~~-~~lywtd~~~~  311 (400)
T 3p5b_L          249 NGITLDLLSGRLYWVDSKLHSISSIDVNGG---NRKTILEDEKRLAHPFSLAVFE-DKVFWTDIINE  311 (400)
T ss_dssp             EEEEEETTTTEEEEEETTTTEEEEEETTSC---CCEEEEECSSTTSSEEEEEEET-TEEEEEESSSC
T ss_pred             EEEEEEeCCCEEEEEECCCCEEEEEeCCCC---ccEEEEeCCCCCCCCEEEEEeC-CEEEEecCCCC
Confidence            999999888889999999999999998763   2233322  2235788999964 47888886654

>2ism_A Putative oxidoreductase; BL41XU spring-8, bladed beta-propellor, glucose dehydrogenas structural genomics, NPPSFA; 1.90A {Thermus thermophilus}

Probab=99.72  E-value=1.5e-15  Score=124.83  Aligned_cols=164  Identities=17%  Similarity=0.176  Sum_probs=102.3

Q ss_pred             ceecccccCCcccEEEcCCCcEEEEeCCCcEEEEccCCceeEecc------cCCccccceEEccC----CCEEEEEeCC-
Q 026118            2 IKLGEGIVNHPEDVSVDGNGVLYTATGDGWIKRMHPNGTWEDWHQ------VGSQSLLGLTTTKE----NNVIIVCDSQ-   70 (243)
Q Consensus         2 ~~~~~g~~~~p~~i~~d~~g~l~~~~~~~~i~~~~~~g~~~~~~~------~~~~~~~~i~~~~~----g~l~~v~~~~-   70 (243)
                      +.++++ +..|.+|+++++|+||+++..++|++++ +++...+..      ....|. +|+++++    +.+ |++... 
T Consensus        24 ~~va~~-l~~P~~ia~~pdG~l~V~e~~g~I~~i~-~g~~~~~~~~~v~~~g~~~p~-gia~~pdf~~~g~l-Yv~~~~~   99 (352)
T 2ism_A           24 EEVVGG-LEVPWALAFLPDGGMLIAERPGRIRLFR-EGRLSTYAELSVYHRGESGLL-GLALHPRFPQEPYV-YAYRTVA   99 (352)
T ss_dssp             EEEECC-CSCEEEEEECTTSCEEEEETTTEEEEEE-TTEEEEEEECCCCCSTTCSEE-EEEECTTTTTSCEE-EEEEEEC
T ss_pred             EEEECC-CCCceEEEEcCCCeEEEEeCCCeEEEEE-CCCccEeecceEeecCCCCce-eEEECCCCCCCCEE-EEEEecC
Confidence            456665 8899999999999999999779999998 665443321      124577 9999998    555 998753 


Q ss_pred             -----CcEEEEe-cCC-c---EEEEeccC--CCcccCCccEEEcCCCcEEEEeCCCCCCcccccccccccCCCceEEEEe
Q 026118           71 -----QGLLKVS-EEG-V---TVLVSQFN--GSQLRFANDVIEASDGSLYFTVSSTKFTPAEYYLDLVSGEPHGVLLKYD  138 (243)
Q Consensus        71 -----~gl~~~~-~~g-~---~~~~~~~~--~~~~~~~~~l~~d~~G~l~v~~~~~~~~~~~~~~~~~~~~~~g~v~~~~  138 (243)
                           ..|++++ ..+ .   +.+.....  ......+.+|++++||.||+++......  ....  ......++|+|++
T Consensus       100 ~~~~~~~v~r~~~~~~~~~~~~~l~~~~p~~~~~~h~~~~l~~~pdG~Lyv~~G~~~~~--~~~~--d~~~~~g~I~ri~  175 (352)
T 2ism_A          100 EGGLRNQVVRLRHLGERGVLDRVVLDGIPARPHGLHSGGRIAFGPDGMLYVTTGEVYER--ELAQ--DLASLGGKILRLT  175 (352)
T ss_dssp             TTSSEEEEEEEEECSSCEEEEEEEEEEECCCTTCCCCCCCEEECTTSCEEEECCCTTCG--GGGG--CTTCSSSEEEEEC
T ss_pred             CCCCccEEEEEEeCCCCcCceEEEEEeCCCCCCCCcCCceEEECCCCCEEEEECCCCCC--cccc--CCCCCceEEEEEc
Confidence                 5688988 433 2   22332222  2233567899999999999996431110  0000  0112346777777


Q ss_pred             CCC-------------CeeEEeeccccccceEEEcC-CCCEEEEEEcCCC
Q 026118          139 PST-------------NQTSLVLDGLYFANGVALSE-DERFLVVCESWKF  174 (243)
Q Consensus       139 ~~~-------------~~~~~~~~~~~~~~gi~~~~-dg~~l~v~~~~~~  174 (243)
                      +++             ...+.+..+...|++|++++ +|+ ||+++...+
T Consensus       176 ~dG~~p~~npf~~~~~~~~~i~a~G~rnp~g~a~d~~~g~-l~v~d~g~~  224 (352)
T 2ism_A          176 PEGEPAPGNPFLGRRGARPEVYSLGHRNPQGLAWHPKTGE-LFSSEHGPS  224 (352)
T ss_dssp             TTSSBCTTCTTTTCTTSCTTEEEECCSEECCCEECTTTCC-EEEEEECC-
T ss_pred             CCCCCCCCCcccCCCCCCccEEEEcCCCcccEEEECCCCC-EEEEEcCCC
Confidence            763             12233344455566777776 444 666665443

>3a9g_A Putative uncharacterized protein; PQQ dependent dehydrogenase, aldose sugar dehydrogenase, BET propeller fold, oxidoreductase; HET: TRE; 2.39A {Pyrobaculum aerophilum} PDB: 3a9h_A*

Probab=99.72  E-value=1.3e-15  Score=125.26  Aligned_cols=208  Identities=15%  Similarity=0.154  Sum_probs=133.9

Q ss_pred             ceecccccCCcccEEEcCCCcEEEEeCCCcEEEEccCCceeEecc------cCCccccceEEccC----CCEEEEEeCC-
Q 026118            2 IKLGEGIVNHPEDVSVDGNGVLYTATGDGWIKRMHPNGTWEDWHQ------VGSQSLLGLTTTKE----NNVIIVCDSQ-   70 (243)
Q Consensus         2 ~~~~~g~~~~p~~i~~d~~g~l~~~~~~~~i~~~~~~g~~~~~~~------~~~~~~~~i~~~~~----g~l~~v~~~~-   70 (243)
                      ++++++ +..|++|+++++|+||+++..++|++++.+|+ +.+..      ....+. +|+++++    |.+ |++... 
T Consensus        22 ~~va~~-l~~P~~ia~~pdG~l~V~e~~g~I~~~d~~G~-~~~~~~~v~~~g~~g~~-gia~~pdf~~~g~l-yv~~~~~   97 (354)
T 3a9g_A           22 SEVASD-LEVPWSIAPLGGGRYLVTERPGRLVLISPSGK-KLVASFDVANVGEAGLL-GLALHPEFPKKSWV-YLYASYF   97 (354)
T ss_dssp             EEEECS-CSCEEEEEEEETTEEEEEETTTEEEEECSSCE-EEEEECCCCCSTTCSEE-EEEECTTTTTSCEE-EEEEEEE
T ss_pred             EEEeCC-CCCCeEEEEcCCCeEEEEeCCCEEEEEeCCCc-eEeeccceeecCCCcee-eEEeCCCCCcCCEE-EEEEecc
Confidence            456665 89999999999999999998899999987776 43321      124567 9999987    566 998753 


Q ss_pred             -------CcEEEEe-cCC------cEEEEeccCCCcccCCccEEEcCCCcEEEEeCCCCCCcccccccccccCCCceEEE
Q 026118           71 -------QGLLKVS-EEG------VTVLVSQFNGSQLRFANDVIEASDGSLYFTVSSTKFTPAEYYLDLVSGEPHGVLLK  136 (243)
Q Consensus        71 -------~gl~~~~-~~g------~~~~~~~~~~~~~~~~~~l~~d~~G~l~v~~~~~~~~~~~~~~~~~~~~~~g~v~~  136 (243)
                             ..|++++ ..+      .+.+...........+++|++++||.||+++.....  ....  .......++|+|
T Consensus        98 ~~~~~~~~~v~r~~~~~~~~~~~~~~~l~~~~~~~~~h~~~~l~~~pDG~Lyvt~G~~~~--~~~~--~d~~~~~G~I~r  173 (354)
T 3a9g_A           98 AEGGHIRNRVIRGRLDGSTFKLKEVKTLIDGIPGAYIHNGGRIRFGPDGMLYITTGDAAD--PRLA--QDLSSLAGKILR  173 (354)
T ss_dssp             CGGGCEEEEEEEEEECSSSCCEEEEEEEEEEEECCSSCCCCCEEECTTSCEEEECCCTTC--GGGG--TCTTCCSSEEEE
T ss_pred             CCCCCcceEEEEEEECCCCcCcCccEEEEEcCCCCCCcCCceEEECCCCcEEEEECCCCC--Cccc--cCCCCCCeEEEE
Confidence                   5688888 322      122322222223346789999999999999643110  0000  011234578999


Q ss_pred             EeCCCC--------eeEEeeccccccceEEEcC-CCCEEEEEEcCCCe---EEEEEeecCCCcc--------------eE
Q 026118          137 YDPSTN--------QTSLVLDGLYFANGVALSE-DERFLVVCESWKFR---CVKHFLKVSGRTD--------------RE  190 (243)
Q Consensus       137 ~~~~~~--------~~~~~~~~~~~~~gi~~~~-dg~~l~v~~~~~~~---i~~~~~~~~~~~~--------------~~  190 (243)
                      +++++.        ..+.+..++..|++|++++ +|+ ||+++...+.   |.++.. +...+.              ..
T Consensus       174 i~~dG~~p~~npf~~~~i~a~G~rnp~Gla~d~~~g~-l~v~d~g~~~~dei~~i~~-G~nyGwp~~~g~~~~~~~~~p~  251 (354)
T 3a9g_A          174 VDEEGRPPADNPFPNSPIWSYGHRNPQGIDWHRASGV-MVATEHGPVGHDEVNIILK-GGNYGWPLATGKAGRGEFVDPV  251 (354)
T ss_dssp             ECTTSCCCTTSSSTTCCEEEECCSCCCEEEECTTTCC-EEEEECCSSSCCEEEEECT-TCBCCTTTCCSCCCCTTSCCCS
T ss_pred             EcCCCCCCCCCCCCCCcEEEEccCCcceEEEeCCCCC-EEEEecCCCCCcEEEEecC-CCcCCCCcccCCCCCCCCcCCE
Confidence            999843        2355566778899999999 666 9999876654   444332 111110              00


Q ss_pred             EeccCCCCCCCceEE-------CCCCCEEEEEecCC
Q 026118          191 IFIDNLPGGPDNVNL-------ARDGSFWISIIKMD  219 (243)
Q Consensus       191 ~~~~~~~~~~~~i~~-------d~~G~lwv~~~~~~  219 (243)
                      .........|.++++       +.+|++|++...+.
T Consensus       252 ~~~~~~~~ap~G~~~y~g~~fp~~~G~l~v~~~~~~  287 (354)
T 3a9g_A          252 IDTGSETWAPSGASFVHGDMFPGLRGWLLIACLRGS  287 (354)
T ss_dssp             EECTTCCCCEEEEEECCSSSCGGGTTEEEEEETTTT
T ss_pred             eecCCCCcCCcceEEECCCCCcccCCcEEEEEcCCC
Confidence            000011235788888       46889999886553

>3hrp_A Uncharacterized protein; NP_812590.1, structural genomics protein of unknown function structural genomics; HET: MSE; 1.70A {Bacteroides thetaiotaomicron vpi-5482}

Probab=99.71  E-value=1.9e-15  Score=126.73  Aligned_cols=186  Identities=13%  Similarity=0.175  Sum_probs=126.3

Q ss_pred             cCCcccEEEcCCC-cEEEEeCCC--cEEEEccCCce--eEe----cccCCccccceEEcc-CCCEEEEEeCCCcEEEEe-
Q 026118            9 VNHPEDVSVDGNG-VLYTATGDG--WIKRMHPNGTW--EDW----HQVGSQSLLGLTTTK-ENNVIIVCDSQQGLLKVS-   77 (243)
Q Consensus         9 ~~~p~~i~~d~~g-~l~~~~~~~--~i~~~~~~g~~--~~~----~~~~~~~~~~i~~~~-~g~l~~v~~~~~gl~~~~-   77 (243)
                      ...|. ++++++| .||+++.++  .|+++++.+..  ...    ......|. ++++++ +|++ |+++..+.|++++ 
T Consensus       171 ~~~~~-ia~~~~g~~l~~~d~~~~~~I~~~d~~~~~~~~~~g~~~~~~~~~p~-~iav~p~~g~l-yv~d~~~~I~~~d~  247 (409)
T 3hrp_A          171 FKGGK-PAVTKDKQRVYSIGWEGTHTVYVYMKASGWAPTRIGQLGSTFSGKIG-AVALDETEEWL-YFVDSNKNFGRFNV  247 (409)
T ss_dssp             CCBCB-CEECTTSSEEEEEBSSTTCEEEEEEGGGTTCEEEEEECCTTSCSCCC-BCEECTTSSEE-EEECTTCEEEEEET
T ss_pred             CCCCc-eeEecCCCcEEEEecCCCceEEEEEcCCCceeEEeeeccchhcCCcE-EEEEeCCCCeE-EEEECCCcEEEEEC
Confidence            34577 9999887 488887543  89999854322  222    11335677 999999 6666 8987655699999 


Q ss_pred             cCC-cEEEEec-cCCCcccCCc-cEEEcC-CCcEEEEeCCCCCCcccccccccccCCCceEEEEeCCCCeeEEeecc---
Q 026118           78 EEG-VTVLVSQ-FNGSQLRFAN-DVIEAS-DGSLYFTVSSTKFTPAEYYLDLVSGEPHGVLLKYDPSTNQTSLVLDG---  150 (243)
Q Consensus        78 ~~g-~~~~~~~-~~~~~~~~~~-~l~~d~-~G~l~v~~~~~~~~~~~~~~~~~~~~~~g~v~~~~~~~~~~~~~~~~---  150 (243)
                      .++ ...+... ..+.....|. ++++++ +|++|+++..                 .+.|++++++ ++...+...   
T Consensus       248 ~~~~~~~~~~~~~~g~~~~~P~~~ia~~p~~g~lyv~d~~-----------------~~~I~~~~~~-g~~~~~~g~~~~  309 (409)
T 3hrp_A          248 KTQEVTLIKQLELSGSLGTNPGPYLIYYFVDSNFYMSDQN-----------------LSSVYKITPD-GECEWFCGSATQ  309 (409)
T ss_dssp             TTCCEEEEEECCCCSCCCCSSCCEEEEETTTTEEEEEETT-----------------TTEEEEECTT-CCEEEEEECTTC
T ss_pred             CCCCEEEEecccccCCCCCCccccEEEeCCCCEEEEEeCC-----------------CCEEEEEecC-CCEEEEEeCCCC
Confidence            445 3333211 1111112345 999999 6899999754                 3589999998 445444322   


Q ss_pred             ------------ccccceEEEcCCCCEEEEEEc-CCCeEEEEEeecCCCcceEEeccC--------------CCCCCCce
Q 026118          151 ------------LYFANGVALSEDERFLVVCES-WKFRCVKHFLKVSGRTDREIFIDN--------------LPGGPDNV  203 (243)
Q Consensus       151 ------------~~~~~gi~~~~dg~~l~v~~~-~~~~i~~~~~~~~~~~~~~~~~~~--------------~~~~~~~i  203 (243)
                                  +..|++|+++++|+ ||+++. .+++|.++++..+.   ...+...              ....|.+|
T Consensus       310 ~g~~dg~~~~~~~~~P~gia~d~dG~-lyvad~~~~~~I~~~~~~~G~---v~~~~g~~~~~g~~~g~~~~~~~~~P~gi  385 (409)
T 3hrp_A          310 KTVQDGLREEALFAQPNGMTVDEDGN-FYIVDGFKGYCLRKLDILDGY---VSTVAGQVDVASQIDGTPLEATFNYPYDI  385 (409)
T ss_dssp             CSCBCEEGGGCBCSSEEEEEECTTCC-EEEEETTTTCEEEEEETTTTE---EEEEEECTTCBSCCCBSTTTCCBSSEEEE
T ss_pred             CCcCCCcccccEeCCCeEEEEeCCCC-EEEEeCCCCCEEEEEECCCCE---EEEEeCCCCCCCcCCCChhceEeCCceEE
Confidence                        35699999999999 999999 89999999953322   2222110              12369999


Q ss_pred             EECCCCCEEEEEecCC
Q 026118          204 NLARDGSFWISIIKMD  219 (243)
Q Consensus       204 ~~d~~G~lwv~~~~~~  219 (243)
                      ++|++|+|||++..++
T Consensus       386 avd~~g~lyVad~~n~  401 (409)
T 3hrp_A          386 CYDGEGGYWIAEAWGK  401 (409)
T ss_dssp             EECSSSEEEEEESTTC
T ss_pred             EEcCCCCEEEEECCCC
Confidence            9999999999987654

>3s94_A LRP-6, low-density lipoprotein receptor-related protein; WNT, LDL receptor-like protein, dickko YWTD B-propeller, signaling protein; HET: NAG; 2.80A {Homo sapiens} PDB: 4dg6_A*

Probab=99.71  E-value=2.1e-15  Score=132.49  Aligned_cols=187  Identities=17%  Similarity=0.140  Sum_probs=131.2

Q ss_pred             ccCCcccEEEcC-CCcEEEEe-CCCcEEEEccCCc--ee-EecccCCccccceEEccCCCEEEEEeCCC-cEEEEecCC-
Q 026118            8 IVNHPEDVSVDG-NGVLYTAT-GDGWIKRMHPNGT--WE-DWHQVGSQSLLGLTTTKENNVIIVCDSQQ-GLLKVSEEG-   80 (243)
Q Consensus         8 ~~~~p~~i~~d~-~g~l~~~~-~~~~i~~~~~~g~--~~-~~~~~~~~~~~~i~~~~~g~l~~v~~~~~-gl~~~~~~g-   80 (243)
                      .+..|.+|++|+ ++.||+++ ..++|++++.+|.  .. .+......|. +|++|..++.||+++... .|.+++.+| 
T Consensus        38 ~~~~~~~ld~~~~~~~ly~sD~~~~~I~r~~~~g~~~~~~v~~~~~~~P~-GlAvD~~~~~ly~~d~~~~~I~v~~~dG~  116 (619)
T 3s94_A           38 GLEDAAAVDFVFSHGLIYWSDVSEEAIKRTEFNKTESVQNVVVSGLLSPD-GLACDWLGEKLYWTDSETNRIEVSNLDGS  116 (619)
T ss_dssp             CCSCEEEEEEETTTTEEEEEETTTTEEEEEEC-----CEEEECSSCSCEE-EEEEETTTTEEEEEETTTTEEEEEETTSC
T ss_pred             CCCceEEEEEEeCCCEEEEEECCCCeEEEEEccCCCceEEEEeCCCCCcC-eEEEEecCCEEEEEeCCCCEEEEEECCCC
Confidence            477899999996 77899998 6788999987664  22 2323335788 999998555449988654 467777656 


Q ss_pred             -cEEEEeccCCCcccCCccEEEcCC-CcEEEEeCCCCCCcccccccccccCCCceEEEEeCCCCeeEEee-ccccccceE
Q 026118           81 -VTVLVSQFNGSQLRFANDVIEASD-GSLYFTVSSTKFTPAEYYLDLVSGEPHGVLLKYDPSTNQTSLVL-DGLYFANGV  157 (243)
Q Consensus        81 -~~~~~~~~~~~~~~~~~~l~~d~~-G~l~v~~~~~~~~~~~~~~~~~~~~~~g~v~~~~~~~~~~~~~~-~~~~~~~gi  157 (243)
                       .+.+..    .....|++|++||. |.||+++.+                ..++|++.++++...+.+. .....|+||
T Consensus       117 ~~~~l~~----~~l~~P~~Iavdp~~g~ly~tD~g----------------~~~~I~r~~~dG~~~~~l~~~~~~~P~Gl  176 (619)
T 3s94_A          117 LRKVLFW----QELDQPRAIALDPSSGFMYWTDWG----------------EVPKIERAGMDGSSRFIIINSEIYWPNGL  176 (619)
T ss_dssp             SCEEEEC----SSCSCCCCEEEETTTTEEEEEECS----------------SSCEEEEEETTSCSCEEEECSSCSSEEEE
T ss_pred             CEEEEEe----CCCCCCceEEEecCCCeEEEeccC----------------CCCEEEEEECCCCceEEEEeCCCCCCcEE
Confidence             444432    23467999999984 889999754                2358999999855444443 467789999


Q ss_pred             EEcCCCCEEEEEEcCCCeEEEEEeecCCCcceEEeccCCCCCCCceEECCCCCEEEEEecCC
Q 026118          158 ALSEDERFLVVCESWKFRCVKHFLKVSGRTDREIFIDNLPGGPDNVNLARDGSFWISIIKMD  219 (243)
Q Consensus       158 ~~~~dg~~l~v~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~i~~d~~G~lwv~~~~~~  219 (243)
                      +++++++.|||++...+.|+++++++.   ..+.+.......|.+|+++.+ +||++++...
T Consensus       177 ald~~~~~LY~aD~~~~~I~~~~~dG~---~~~~~~~~~~~~P~gi~~~~~-~ly~td~~~~  234 (619)
T 3s94_A          177 TLDYEEQKLYWADAKLNFIHKSNLDGT---NRQAVVKGSLPHPFALTLFED-ILYWTDWSTH  234 (619)
T ss_dssp             EEETTTTEEEEEETTTCCEEEESSSCC---EEC---------CCCEEESSS-EEEEECTTTC
T ss_pred             EEEccCCEEEEEeCCCCeEEEecCCCC---ccEEEEeCCCCCceEEEEeCC-EEEEecCCCC
Confidence            999987789999999999999998763   222232223457999999877 8999887654

>2fp8_A Strictosidine synthase; six bladed beta propeller fold, lyase; 2.30A {Rauvolfia serpentina} PDB: 2fp9_A* 2fpc_A* 2vaq_A* 3v1s_A* 2fpb_A* 2v91_A*

Probab=99.69  E-value=1.5e-15  Score=123.18  Aligned_cols=180  Identities=14%  Similarity=0.095  Sum_probs=123.7

Q ss_pred             cCCcccEEEcC-CCcEEEEeCCCcEEEEccC-CceeEeccc-----CCccccceEEcc-CCCEEEEEeCC----------
Q 026118            9 VNHPEDVSVDG-NGVLYTATGDGWIKRMHPN-GTWEDWHQV-----GSQSLLGLTTTK-ENNVIIVCDSQ----------   70 (243)
Q Consensus         9 ~~~p~~i~~d~-~g~l~~~~~~~~i~~~~~~-g~~~~~~~~-----~~~~~~~i~~~~-~g~l~~v~~~~----------   70 (243)
                      +..|.+|++++ +|+||+++..++|++++++ +.++.+...     ...|. ++++++ +|++ |+++..          
T Consensus        79 ~~~p~gi~~~~~~g~l~v~d~~~~i~~~d~~~g~~~~~~~~~~~~~~~~p~-~i~~d~~~G~l-~v~d~~~~~~~~~~~~  156 (322)
T 2fp8_A           79 CGRTYDISYNLQNNQLYIVDCYYHLSVVGSEGGHATQLATSVDGVPFKWLY-AVTVDQRTGIV-YFTDVSTLYDDRGVQQ  156 (322)
T ss_dssp             HCCEEEEEEETTTTEEEEEETTTEEEEECTTCEECEEEESEETTEECSCEE-EEEECTTTCCE-EEEESCSSCCTTCHHH
T ss_pred             CCCCceEEEcCCCCcEEEEECCCCEEEEeCCCCEEEEecccCCCCcccccc-eEEEecCCCEE-EEECCcccccccccce
Confidence            35799999997 8999999866779999865 444443211     13467 899999 9998 998753          


Q ss_pred             --------CcEEEEe-cCC-cEEEEeccCCCcccCCccEEEcCCCc-EEEEeCCCCCCcccccccccccCCCceEEEEeC
Q 026118           71 --------QGLLKVS-EEG-VTVLVSQFNGSQLRFANDVIEASDGS-LYFTVSSTKFTPAEYYLDLVSGEPHGVLLKYDP  139 (243)
Q Consensus        71 --------~gl~~~~-~~g-~~~~~~~~~~~~~~~~~~l~~d~~G~-l~v~~~~~~~~~~~~~~~~~~~~~~g~v~~~~~  139 (243)
                              .+|++++ .++ .+.+..     ....|++|+++++|+ +|+++..                 .++|++++.
T Consensus       157 ~~~~~~~~g~v~~~d~~~~~~~~~~~-----~~~~p~gia~~~dg~~lyv~d~~-----------------~~~I~~~~~  214 (322)
T 2fp8_A          157 IMDTSDKTGRLIKYDPSTKETTLLLK-----ELHVPGGAEVSADSSFVLVAEFL-----------------SHQIVKYWL  214 (322)
T ss_dssp             HHHHTCCCEEEEEEETTTTEEEEEEE-----EESCCCEEEECTTSSEEEEEEGG-----------------GTEEEEEES
T ss_pred             ehcccCCCceEEEEeCCCCEEEEecc-----CCccCcceEECCCCCEEEEEeCC-----------------CCeEEEEEC
Confidence                    3588998 455 444332     135688999999986 9999643                 358999998


Q ss_pred             CC---CeeEEeeccccccceEEEcCCCCEEEEEEcC----------CCeEEEEEeecCCCcceEEeccC--C-CCCCCce
Q 026118          140 ST---NQTSLVLDGLYFANGVALSEDERFLVVCESW----------KFRCVKHFLKVSGRTDREIFIDN--L-PGGPDNV  203 (243)
Q Consensus       140 ~~---~~~~~~~~~~~~~~gi~~~~dg~~l~v~~~~----------~~~i~~~~~~~~~~~~~~~~~~~--~-~~~~~~i  203 (243)
                      ++   ++.+.+..... |.+|+++++|+ ||++...          .+.|.+|+.++.   ....+...  . ...+.++
T Consensus       215 ~~~~~~~~~~~~~~~g-P~gi~~d~~G~-l~va~~~~~~~~~~~~~~~~v~~~d~~G~---~~~~~~~~~g~~~~~~~~~  289 (322)
T 2fp8_A          215 EGPKKGTAEVLVKIPN-PGNIKRNADGH-FWVSSSEELDGNMHGRVDPKGIKFDEFGN---ILEVIPLPPPFAGEHFEQI  289 (322)
T ss_dssp             SSTTTTCEEEEEECSS-EEEEEECTTSC-EEEEEEEETTSSTTSCEEEEEEEECTTSC---EEEEEECCTTTTTSCCCEE
T ss_pred             CCCcCCccceEEeCCC-CCCeEECCCCC-EEEEecCcccccccCCCccEEEEECCCCC---EEEEEECCCCCccccceEE
Confidence            74   23344332223 99999999998 9999765          467889887542   12223211  1 2346667


Q ss_pred             EECCCCCEEEEEecC
Q 026118          204 NLARDGSFWISIIKM  218 (243)
Q Consensus       204 ~~d~~G~lwv~~~~~  218 (243)
                      +. .+|+|||++...
T Consensus       290 ~~-~~g~L~v~~~~~  303 (322)
T 2fp8_A          290 QE-HDGLLYIGTLFH  303 (322)
T ss_dssp             EE-ETTEEEEECSSC
T ss_pred             EE-eCCEEEEeecCC
Confidence            66 478999987544

>3s94_A LRP-6, low-density lipoprotein receptor-related protein; WNT, LDL receptor-like protein, dickko YWTD B-propeller, signaling protein; HET: NAG; 2.80A {Homo sapiens} PDB: 4dg6_A*

Probab=99.69  E-value=9.3e-15  Score=128.38  Aligned_cols=186  Identities=15%  Similarity=0.140  Sum_probs=136.3

Q ss_pred             ccCCcccEEEcC-CCcEEEEe-CCCcEEEEccCCc-eeEec-ccCCccccceEEcc-CCCEEEEEeCCC-cEEEEecCC-
Q 026118            8 IVNHPEDVSVDG-NGVLYTAT-GDGWIKRMHPNGT-WEDWH-QVGSQSLLGLTTTK-ENNVIIVCDSQQ-GLLKVSEEG-   80 (243)
Q Consensus         8 ~~~~p~~i~~d~-~g~l~~~~-~~~~i~~~~~~g~-~~~~~-~~~~~~~~~i~~~~-~g~l~~v~~~~~-gl~~~~~~g-   80 (243)
                      ++..|.+|++|+ ++.||+++ ..+.|++++.+|. ...+. .....|. ||++|. .+++ |+++... .|.+++.+| 
T Consensus       347 ~l~~~~~ld~d~~~~~ly~sD~~~~~I~r~~~~g~~~~~v~~~~~~~p~-GlAvD~~~~~l-Y~tD~~~~~I~v~~~~G~  424 (619)
T 3s94_A          347 DIRHAIAIDYDPVEGYIYWTDDEVRAIRRSFIDGSGSQFVVTAQIAHPD-GIAVDWVARNL-YWTDTGTDRIEVTRLNGT  424 (619)
T ss_dssp             CCSSEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEECSSCSCCC-EEEEETTTTEE-EEEETTTTEEEEEETTSC
T ss_pred             ccCccEEEEEEcCCCeEEEEeCCCCeEEEEEcCCCccEEEEECCCCCcC-ceEEecccCcE-EEEeCCCCcEEEEeCCCC
Confidence            367899999996 78999998 6788999997664 33332 2235788 999996 5566 9988664 466666555 


Q ss_pred             -cEEEEeccCCCcccCCccEEEcCC-CcEEEEeCCCCCCcccccccccccCCCceEEEEeCCCCeeEEee-ccccccceE
Q 026118           81 -VTVLVSQFNGSQLRFANDVIEASD-GSLYFTVSSTKFTPAEYYLDLVSGEPHGVLLKYDPSTNQTSLVL-DGLYFANGV  157 (243)
Q Consensus        81 -~~~~~~~~~~~~~~~~~~l~~d~~-G~l~v~~~~~~~~~~~~~~~~~~~~~~g~v~~~~~~~~~~~~~~-~~~~~~~gi  157 (243)
                       .+.+..    .....|.+|++||. |.||+++.+                ...+|++.+.++...+.+. ..+..|+||
T Consensus       425 ~~~~l~~----~~l~~P~~iavdp~~G~ly~tD~g----------------~~~~I~r~~~dG~~~~~l~~~~l~~P~Gl  484 (619)
T 3s94_A          425 MRKILIS----EDLEEPRAIVLDPMVGYMYWTDWG----------------EIPKIERAALDGSDRVVLVNTSLGWPNGL  484 (619)
T ss_dssp             SCEEEEC----TTCCSEEEEEEETTTTEEEEEECS----------------SSCEEEEEETTSCSCEEEECSSCSCEEEE
T ss_pred             eEEEEEE----CCCCCeeeEEEEcCCCcEEEecCC----------------CCCEEEEEccCCCccEEEEeCCCCCCeee
Confidence             444432    23568999999984 999999854                1358999999854444443 457899999


Q ss_pred             EEcCCCCEEEEEEcCCCeEEEEEeecCCCcceEEeccCCCCCCCceEECCCCCEEEEEecCC
Q 026118          158 ALSEDERFLVVCESWKFRCVKHFLKVSGRTDREIFIDNLPGGPDNVNLARDGSFWISIIKMD  219 (243)
Q Consensus       158 ~~~~dg~~l~v~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~i~~d~~G~lwv~~~~~~  219 (243)
                      ++|++++.|||++...+.|.++++++..   .+.+.......|.+|+++.+ +||++++...
T Consensus       485 alD~~~~~LY~aD~~~~~I~~~~~dG~~---~~~~~~~~l~~P~glav~~~-~ly~tD~~~~  542 (619)
T 3s94_A          485 ALDYDEGKIYWGDAKTDKIEVMNTDGTG---RRVLVEDKIPHIFGFTLLGD-YVYWTDWQRR  542 (619)
T ss_dssp             EEETTTTEEEEEETTTTEEEEEESSSCC---CEEEEECCCCSSCCEEEETT-EEEEECTTSS
T ss_pred             EEcccCCEEEEEECCCCEEEEEecCCCc---eEEEeccCCCCcEEEEEECC-EEEEeecCCC
Confidence            9999777799999999999999988642   23332233457999999865 8999887654

>3kya_A Putative phosphatase; structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PS hydrolase; HET: MSE; 1.77A {Bacteroides thetaiotaomicron}

Probab=99.68  E-value=3.4e-15  Score=126.67  Aligned_cols=190  Identities=11%  Similarity=0.123  Sum_probs=133.9

Q ss_pred             ccccCCcccEEEcC--CCcEEEEe-CCCcEEEEcc-CCceeEecccC----CccccceEE-------ccCCCEEEEEeCC
Q 026118            6 EGIVNHPEDVSVDG--NGVLYTAT-GDGWIKRMHP-NGTWEDWHQVG----SQSLLGLTT-------TKENNVIIVCDSQ   70 (243)
Q Consensus         6 ~g~~~~p~~i~~d~--~g~l~~~~-~~~~i~~~~~-~g~~~~~~~~~----~~~~~~i~~-------~~~g~l~~v~~~~   70 (243)
                      ++.|..|.+|++||  +++||++. ..++|.++|. .+.+..+....    ..|. +|++       +++|+.||+++..
T Consensus       135 ~~~~~~p~~la~dp~~~~~Lyv~~~~~~~i~~ID~~~~~v~~l~~~~~~~~~~p~-~ia~~~~~~~~d~~G~~lyvad~~  213 (496)
T 3kya_A          135 CCGFSDNGRLAFDPLNKDHLYICYDGHKAIQLIDLKNRMLSSPLNINTIPTNRIR-SIAFNKKIEGYADEAEYMIVAIDY  213 (496)
T ss_dssp             CBCCCSEEEEEEETTEEEEEEEEEETEEEEEEEETTTTEEEEEECCTTSSCSBEE-EEEECCCBTTTBCTTCEEEEEECC
T ss_pred             ccccCCCCEEEEccCCCCEEEEEECCCCeEEEEECCCCEEEEEEccCccccCCCc-EEEEeecccccCCCCCEEEEEeCC
Confidence            55678899999997  47899998 4567999994 55666654321    2477 9999       9999855999865


Q ss_pred             C-------cEEEEe-c-CC-cE------EEEeccCCCcccCCccEEEcC-CCcEEEEeCCCCCCcccccccccccCCCce
Q 026118           71 Q-------GLLKVS-E-EG-VT------VLVSQFNGSQLRFANDVIEAS-DGSLYFTVSSTKFTPAEYYLDLVSGEPHGV  133 (243)
Q Consensus        71 ~-------gl~~~~-~-~g-~~------~~~~~~~~~~~~~~~~l~~d~-~G~l~v~~~~~~~~~~~~~~~~~~~~~~g~  133 (243)
                      .       .++.++ . +| +.      .+.      ....|+++++++ +|.||+++..                 .+.
T Consensus       214 ~~~~~~~~~V~~i~r~~~G~~~~~~~~~~v~------~~~~p~giavdp~~g~LYvtd~~-----------------~g~  270 (496)
T 3kya_A          214 DGKGDESPSVYIIKRNADGTFDDRSDIQLIA------AYKQCNGATIHPINGELYFNSYE-----------------KGQ  270 (496)
T ss_dssp             CTTGGGEEEEEEEECCTTSCCSTTSCEEEEE------EESCCCCEEECTTTCCEEEEETT-----------------TTE
T ss_pred             CCCcccCceEEEEecCCCCceeecccceeec------cCCCceEEEEcCCCCeEEEEECC-----------------CCE
Confidence            4       377886 3 34 32      222      134688999999 6889999754                 467


Q ss_pred             EEEEeCC-------CCee------------EEee--ccccccceEEEcCCCCEEEEEEcCCCeEEEEEeecCC--CcceE
Q 026118          134 LLKYDPS-------TNQT------------SLVL--DGLYFANGVALSEDERFLVVCESWKFRCVKHFLKVSG--RTDRE  190 (243)
Q Consensus       134 v~~~~~~-------~~~~------------~~~~--~~~~~~~gi~~~~dg~~l~v~~~~~~~i~~~~~~~~~--~~~~~  190 (243)
                      |+++|++       ++.+            +.+.  .....|.+|+++++|++||+++..+++|++++.++..  +....
T Consensus       271 V~r~d~~~~~~~~~tg~~~tp~~~~~~g~~~~l~~~~~~~~p~~ia~~p~G~~lYvaD~~~h~I~kid~dg~~~~~~~~~  350 (496)
T 3kya_A          271 VFRLDLVDYFKTIKNGGSWDPIVKNNPNTFKQLFTIADPSWEFQIFIHPTGKYAYFGVINNHYFMRSDYDEIKKEFITPY  350 (496)
T ss_dssp             EEEECHHHHHHHHHTTCCCCCBGGGCTTTEEEEEECSSSSCCEEEEECTTSSEEEEEETTTTEEEEEEEETTTTEECCCE
T ss_pred             EEEEecccccccccCceeecccccccccccceeEecCCCCCceEEEEcCCCCEEEEEeCCCCEEEEEecCCCcceecccE
Confidence            9999997       5654            1221  2345688999999999999999999999999987532  11112


Q ss_pred             Eecc--C------------CCCCCC-ceEEC-------CCCCEEEEEecCC
Q 026118          191 IFID--N------------LPGGPD-NVNLA-------RDGSFWISIIKMD  219 (243)
Q Consensus       191 ~~~~--~------------~~~~~~-~i~~d-------~~G~lwv~~~~~~  219 (243)
                      .++.  .            ....|. +++.|       .+|+|||++..++
T Consensus       351 ~~aG~~g~~G~~DG~~~~a~f~~P~~gv~vd~~~~~~~~~g~lyVaD~~N~  401 (496)
T 3kya_A          351 NFVGGYKQSGYRDDVGTEARMNNPCQGVFVKNPDYTGEEEYDFYFVDRLNF  401 (496)
T ss_dssp             EEEEBTTBCCCBCCBGGGCBCSSEEEEEEEECTTCCSSCCEEEEEEEGGGT
T ss_pred             EecCCCCCCcccCCcccccccCCCeEEEEEccccccccCCCeEEEEECCCC
Confidence            2321  1            112577 78887       7899999997654

>1pjx_A Dfpase, DIISOPROPYLFLUOROPHOSPHATASE; phosphotriesterase (PTE), nitrogen-calcium coordination, BET propeller; HET: ME2 MES PGE; 0.85A {Loligo vulgaris} SCOP: b.68.6.1 PDB: 1e1a_A* 2gvv_A* 2gvw_A 3byc_A 3kgg_A 3o4p_A* 3li3_A 2gvx_A 2gvu_A 3li4_A 2iaq_A 3li5_A* 2iao_A 2iap_A 2iau_A 2iax_A 2iaw_A 2ias_A 2iat_A 2iar_A ...

Probab=99.68  E-value=5e-15  Score=118.96  Aligned_cols=181  Identities=13%  Similarity=0.106  Sum_probs=127.3

Q ss_pred             CCcccEEEcCC-CcEEEEeCCCcEEEEccCCceeEe-ccc-----CCccccceEEccCCCEEEEEeCC------------
Q 026118           10 NHPEDVSVDGN-GVLYTATGDGWIKRMHPNGTWEDW-HQV-----GSQSLLGLTTTKENNVIIVCDSQ------------   70 (243)
Q Consensus        10 ~~p~~i~~d~~-g~l~~~~~~~~i~~~~~~g~~~~~-~~~-----~~~~~~~i~~~~~g~l~~v~~~~------------   70 (243)
                      ..|.+++++++ |+||+++..++|++++.+++...+ ...     ...+. +++++++|++ |+++..            
T Consensus        71 ~~~~~i~~~~~~g~l~v~~~~~~l~~~d~~g~~~~~~~~~~~~~~~~~~~-~i~~d~~g~l-~v~~~~~~~~~~~~~~~~  148 (314)
T 1pjx_A           71 GIPAGCQCDRDANQLFVADMRLGLLVVQTDGTFEEIAKKDSEGRRMQGCN-DCAFDYEGNL-WITAPAGEVAPADYTRSM  148 (314)
T ss_dssp             CCEEEEEECSSSSEEEEEETTTEEEEEETTSCEEECCSBCTTSCBCBCCC-EEEECTTSCE-EEEECBCBCTTSCCCBTT
T ss_pred             CCCceEEEecCCCcEEEEECCCCEEEEeCCCCEEEEEeccCCCccccCCc-CEEECCCCCE-EEEecCcccccccccccc
Confidence            56899999998 999999866689999966776655 321     12356 8999999999 998854            


Q ss_pred             ----CcEEEEecCC-cEEEEeccCCCcccCCccEEEc----CCC-cEEEEeCCCCCCcccccccccccCCCceEEEEeCC
Q 026118           71 ----QGLLKVSEEG-VTVLVSQFNGSQLRFANDVIEA----SDG-SLYFTVSSTKFTPAEYYLDLVSGEPHGVLLKYDPS  140 (243)
Q Consensus        71 ----~gl~~~~~~g-~~~~~~~~~~~~~~~~~~l~~d----~~G-~l~v~~~~~~~~~~~~~~~~~~~~~~g~v~~~~~~  140 (243)
                          .+|++++.++ ...+...     ...+++++++    ++| .+|+++..                 .++|++++.+
T Consensus       149 ~~~~~~l~~~~~~g~~~~~~~~-----~~~~~~i~~~~~~d~dg~~l~v~~~~-----------------~~~i~~~~~~  206 (314)
T 1pjx_A          149 QEKFGSIYCFTTDGQMIQVDTA-----FQFPNGIAVRHMNDGRPYQLIVAETP-----------------TKKLWSYDIK  206 (314)
T ss_dssp             SSSCEEEEEECTTSCEEEEEEE-----ESSEEEEEEEECTTSCEEEEEEEETT-----------------TTEEEEEEEE
T ss_pred             cCCCCeEEEECCCCCEEEeccC-----CCCcceEEEecccCCCCCEEEEEECC-----------------CCeEEEEECC
Confidence                3688998446 4443321     2356788999    998 58998643                 3578888865


Q ss_pred             -CCeeEE---ee--c-cc-cccceEEEcCCCCEEEEEEcCCCeEEEEEeecCCCcceEEeccCCCCCCCceEECCCCC-E
Q 026118          141 -TNQTSL---VL--D-GL-YFANGVALSEDERFLVVCESWKFRCVKHFLKVSGRTDREIFIDNLPGGPDNVNLARDGS-F  211 (243)
Q Consensus       141 -~~~~~~---~~--~-~~-~~~~gi~~~~dg~~l~v~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~i~~d~~G~-l  211 (243)
                       ++++..   +.  . .. ..|.+++++++|+ +|+++..++.|.+|+++.+...  ..+. .....|.+++++++|+ |
T Consensus       207 ~~g~~~~~~~~~~~~~~~~~~p~~i~~d~~G~-l~v~~~~~~~i~~~d~~~g~~~--~~~~-~~~~~~~~i~~~~dg~~l  282 (314)
T 1pjx_A          207 GPAKIENKKVWGHIPGTHEGGADGMDFDEDNN-LLVANWGSSHIEVFGPDGGQPK--MRIR-CPFEKPSNLHFKPQTKTI  282 (314)
T ss_dssp             ETTEEEEEEEEEECCCCSSCEEEEEEEBTTCC-EEEEEETTTEEEEECTTCBSCS--EEEE-CSSSCEEEEEECTTSSEE
T ss_pred             CCCccccceEEEECCCCCCCCCCceEECCCCC-EEEEEcCCCEEEEEcCCCCcEe--EEEe-CCCCCceeEEECCCCCEE
Confidence             354321   11  1 11 5688999999998 9999877889999987632221  2221 1224688899999998 9


Q ss_pred             EEEEecC
Q 026118          212 WISIIKM  218 (243)
Q Consensus       212 wv~~~~~  218 (243)
                      |+++...
T Consensus       283 ~v~~~~~  289 (314)
T 1pjx_A          283 FVTEHEN  289 (314)
T ss_dssp             EEEETTT
T ss_pred             EEEeCCC
Confidence            9988653

>3fvz_A Peptidyl-glycine alpha-amidating monooxygenase; beta propeller, lyase, peptide amidation, HG-MAD, Zn-MAD, CL PAIR of basic residues; 2.35A {Rattus norvegicus} PDB: 3fw0_A*

Probab=99.68  E-value=9.1e-15  Score=118.95  Aligned_cols=156  Identities=15%  Similarity=0.146  Sum_probs=112.4

Q ss_pred             ccCCcccEEEcCCCcEEEEeCCC-------------------------cEEEEcc-CCceeEecc--cCCccccceEEcc
Q 026118            8 IVNHPEDVSVDGNGVLYTATGDG-------------------------WIKRMHP-NGTWEDWHQ--VGSQSLLGLTTTK   59 (243)
Q Consensus         8 ~~~~p~~i~~d~~g~l~~~~~~~-------------------------~i~~~~~-~g~~~~~~~--~~~~~~~~i~~~~   59 (243)
                      .+..|.+|++|++|++|++...+                         .|+++++ ++++.....  ....|. ++++++
T Consensus        22 ~l~~v~~va~d~~G~l~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~~~~~p~-gia~d~  100 (329)
T 3fvz_A           22 LPGQVSGVALDSKNNLVIFHRGDHVWDGNSFDSKFVYQQRGLGPIEEDTILVIDPNNAEILQSSGKNLFYLPH-GLSIDT  100 (329)
T ss_dssp             CCSCEEEEEECTTCCEEEEECTTCCCCTTSBCTTSCBSCGGGCSCCSCCEEEECTTTCCEEEEECTTTCSSEE-EEEECT
T ss_pred             ecCCceEEEECCCCCEEEEeCCCCeEEeeccCcceeecccccccccCCcEEEEECCCCeEEeccCCCccCCce-EEEECC
Confidence            46789999999999999998433                         6999995 577654322  123678 999999


Q ss_pred             CCCEEEEEeCC-CcEEEEecCC-c---EEEEecc-C---CCcccCCccEEEcC-CCcEEEEeCCCCCCcccccccccccC
Q 026118           60 ENNVIIVCDSQ-QGLLKVSEEG-V---TVLVSQF-N---GSQLRFANDVIEAS-DGSLYFTVSSTKFTPAEYYLDLVSGE  129 (243)
Q Consensus        60 ~g~l~~v~~~~-~gl~~~~~~g-~---~~~~~~~-~---~~~~~~~~~l~~d~-~G~l~v~~~~~~~~~~~~~~~~~~~~  129 (243)
                      +|++ |+++.. ..|.+++.++ .   ..+.... .   ......|.+|++++ +|++|++++.                
T Consensus       101 ~g~l-~v~d~~~~~v~~~~~~g~~~~~~~~~~~~~~g~~~~~~~~P~~ia~~~~~g~lyv~d~~----------------  163 (329)
T 3fvz_A          101 DGNY-WVTDVALHQVFKLDPHSKEGPLLILGRSMQPGSDQNHFCQPTDVAVEPSTGAVFVSDGY----------------  163 (329)
T ss_dssp             TSCE-EEEETTTTEEEEECTTCSSCCSEEESBTTBCCCSTTCCSSEEEEEECTTTCCEEEEECS----------------
T ss_pred             CCCE-EEEECCCCEEEEEeCCCCeEEEEEecccCCCCCCccccCCCcEEEEeCCCCeEEEEeCC----------------
Confidence            9998 999865 4588888544 2   2222110 0   12345789999999 8999999741                


Q ss_pred             CCceEEEEeCCCCeeEEeec-----------cccccceEEEcCCCCEEEEEEcCCCeEEEEEee
Q 026118          130 PHGVLLKYDPSTNQTSLVLD-----------GLYFANGVALSEDERFLVVCESWKFRCVKHFLK  182 (243)
Q Consensus       130 ~~g~v~~~~~~~~~~~~~~~-----------~~~~~~gi~~~~dg~~l~v~~~~~~~i~~~~~~  182 (243)
                      ..+.|++++++ ++......           ....|.+|++++++..|||++..+++|.+|+.+
T Consensus       164 ~~~~I~~~~~~-g~~~~~~~~~g~~~~~~~~~~~~p~gia~d~~~g~l~v~d~~~~~I~~~~~~  226 (329)
T 3fvz_A          164 CNSRIVQFSPS-GKFVTQWGEESSGSSPRPGQFSVPHSLALVPHLDQLCVADRENGRIQCFKTD  226 (329)
T ss_dssp             SCCEEEEECTT-SCEEEEECEECCSSSCCTTEESCEEEEEEETTTTEEEEEETTTTEEEEEETT
T ss_pred             CCCeEEEEcCC-CCEEEEeccCCCCCCCCCcccCCCcEEEEECCCCEEEEEECCCCEEEEEECC
Confidence            13589999987 44433221           234589999999955599999999999999987

>1npe_A Nidogen, entactin; glycoprotein, basement membrane, beta-propeller, EGF-like, structural protein; 2.30A {Mus musculus} SCOP: b.68.5.1

Probab=99.68  E-value=1.7e-14  Score=113.82  Aligned_cols=177  Identities=14%  Similarity=0.123  Sum_probs=124.7

Q ss_pred             ccCCcccEEEcC-CCcEEEEe-CCCcEEEEccCCcee-Eecc-cCCccccceEEccCCCEEEEEeCC---CcEEEEecCC
Q 026118            8 IVNHPEDVSVDG-NGVLYTAT-GDGWIKRMHPNGTWE-DWHQ-VGSQSLLGLTTTKENNVIIVCDSQ---QGLLKVSEEG   80 (243)
Q Consensus         8 ~~~~p~~i~~d~-~g~l~~~~-~~~~i~~~~~~g~~~-~~~~-~~~~~~~~i~~~~~g~l~~v~~~~---~gl~~~~~~g   80 (243)
                      .+..|.+|++|+ ++.||+++ ..+.|.+++.+++.. .+.. ....|. ++++++++..||+++..   ..|++++.+|
T Consensus        77 ~~~~p~~ia~d~~~~~lyv~d~~~~~I~~~~~~g~~~~~~~~~~~~~P~-~i~vd~~~g~lyv~~~~~~~~~I~~~~~dg  155 (267)
T 1npe_A           77 DLGSPEGIALDHLGRTIFWTDSQLDRIEVAKMDGTQRRVLFDTGLVNPR-GIVTDPVRGNLYWTDWNRDNPKIETSHMDG  155 (267)
T ss_dssp             TCCCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEECSSCSSEE-EEEEETTTTEEEEEECCSSSCEEEEEETTS
T ss_pred             CCCCccEEEEEecCCeEEEEECCCCEEEEEEcCCCCEEEEEECCCCCcc-EEEEeeCCCEEEEEECCCCCcEEEEEecCC
Confidence            467899999997 57899998 567899998766432 2222 225688 99999954434999865   3577888555


Q ss_pred             --cEEEEeccCCCcccCCccEEEcCC-CcEEEEeCCCCCCcccccccccccCCCceEEEEeCCCCeeEEeeccccccceE
Q 026118           81 --VTVLVSQFNGSQLRFANDVIEASD-GSLYFTVSSTKFTPAEYYLDLVSGEPHGVLLKYDPSTNQTSLVLDGLYFANGV  157 (243)
Q Consensus        81 --~~~~~~~~~~~~~~~~~~l~~d~~-G~l~v~~~~~~~~~~~~~~~~~~~~~~g~v~~~~~~~~~~~~~~~~~~~~~gi  157 (243)
                        .+.+..    .....|++|+++++ +++|+++..                 .+.|+++++++...+.+......|.+|
T Consensus       156 ~~~~~~~~----~~~~~P~gia~d~~~~~lyv~d~~-----------------~~~I~~~~~~g~~~~~~~~~~~~P~gi  214 (267)
T 1npe_A          156 TNRRILAQ----DNLGLPNGLTFDAFSSQLCWVDAG-----------------THRAECLNPAQPGRRKVLEGLQYPFAV  214 (267)
T ss_dssp             CCCEEEEC----TTCSCEEEEEEETTTTEEEEEETT-----------------TTEEEEEETTEEEEEEEEECCCSEEEE
T ss_pred             CCcEEEEE----CCCCCCcEEEEcCCCCEEEEEECC-----------------CCEEEEEecCCCceEEEecCCCCceEE
Confidence              343332    12357899999996 579999754                 358999999865555555566789999


Q ss_pred             EEcCCCCEEEEEEcCCCeEEEEEeecCCCcceEEeccCCCCCCCceEECCCCC
Q 026118          158 ALSEDERFLVVCESWKFRCVKHFLKVSGRTDREIFIDNLPGGPDNVNLARDGS  210 (243)
Q Consensus       158 ~~~~dg~~l~v~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~i~~d~~G~  210 (243)
                      +++  ++.|||++..+++|.+++.+++.  ....+.......|.+|++.+++.
T Consensus       215 ~~d--~~~lyva~~~~~~v~~~d~~~g~--~~~~i~~g~~~~p~gi~~~~~~~  263 (267)
T 1npe_A          215 TSY--GKNLYYTDWKTNSVIAMDLAISK--EMDTFHPHKQTRLYGITIALSQC  263 (267)
T ss_dssp             EEE--TTEEEEEETTTTEEEEEETTTTE--EEEEECCSSCCCCCCEEEECSCC
T ss_pred             EEe--CCEEEEEECCCCeEEEEeCCCCC--ceEEEccccccccceeeecCccC
Confidence            876  45699999988999999976432  22333222223589999988875

>4a2l_A BT_4663, two-component system sensor histidine kinase/RESP; transcription, beta-propeller; HET: PGE PG4 MES 2PE; 2.60A {Bacteroides thetaiotaomicron} PDB: 4a2m_A*

Probab=99.67  E-value=7e-15  Score=132.97  Aligned_cols=178  Identities=11%  Similarity=0.140  Sum_probs=128.0

Q ss_pred             cccEEEcCCCcEEEEeCCCcEEEEcc-CCceeEeccc---------CCccccceEEccCCC-EEEEEeCCCcEEEEe-cC
Q 026118           12 PEDVSVDGNGVLYTATGDGWIKRMHP-NGTWEDWHQV---------GSQSLLGLTTTKENN-VIIVCDSQQGLLKVS-EE   79 (243)
Q Consensus        12 p~~i~~d~~g~l~~~~~~~~i~~~~~-~g~~~~~~~~---------~~~~~~~i~~~~~g~-l~~v~~~~~gl~~~~-~~   79 (243)
                      -.+|+.|++|+||+++.+++|+++++ .+++..+...         ..... +++.|++|+ + |+++...||++++ .+
T Consensus       359 V~~i~~d~~g~lWiGt~~~Gl~~~~~~~~~~~~~~~~~~~~~~~l~~~~v~-~i~~d~~g~~l-Wigt~~~Gl~~~d~~~  436 (795)
T 4a2l_A          359 VSCIVEDKDKNLWIGTNDGGLNLYNPITQRFTSYTLQEDESARGIGSNNIK-AVYVDEKKSLV-YIGTHAGGLSILHRNS  436 (795)
T ss_dssp             EEEEEECTTSCEEEEESSSCEEEECTTTCCEEEECCC------CCSCSCEE-EEEEETTTTEE-EEEETTTEEEEEETTT
T ss_pred             eEEEEECCCCCEEEEECCCCeEEEcCCCCcEEEEecCCCCcccCCCCccEE-EEEEcCCCCEE-EEEeCcCceeEEeCCC
Confidence            45788999999999998889999995 4566655321         12234 788899999 7 9999878999999 55


Q ss_pred             C-cEEEEeccCCCcccCCccEEEcCCCcEEEEeCCCCCCcccccccccccCCCceEEEEeCCCCeeEEeecc-------c
Q 026118           80 G-VTVLVSQFNGSQLRFANDVIEASDGSLYFTVSSTKFTPAEYYLDLVSGEPHGVLLKYDPSTNQTSLVLDG-------L  151 (243)
Q Consensus        80 g-~~~~~~~~~~~~~~~~~~l~~d~~G~l~v~~~~~~~~~~~~~~~~~~~~~~g~v~~~~~~~~~~~~~~~~-------~  151 (243)
                      + ++.+...........+.+++.|++|++|+++.                   .+|+++++++++++.+...       .
T Consensus       437 ~~~~~~~~~~~~l~~~~v~~i~~d~~g~lwigt~-------------------~Gl~~~~~~~~~~~~~~~~~~~~~~~~  497 (795)
T 4a2l_A          437 GQVENFNQRNSQLVNENVYAILPDGEGNLWLGTL-------------------SALVRFNPEQRSFTTIEKEKDGTPVVS  497 (795)
T ss_dssp             CCEEEECTTTSCCSCSCEEEEEECSSSCEEEEES-------------------SCEEEEETTTTEEEECCBCTTCCBCCC
T ss_pred             CcEEEeecCCCCcCCCeeEEEEECCCCCEEEEec-------------------CceeEEeCCCCeEEEccccccccccCC
Confidence            6 55554321112234677889999999999953                   3799999998887765421       1


Q ss_pred             cccceEEEcCCCCEEEEEEcCCCeEEEEEeecCCCcceEEecc--CCC----CCCCceEECCCCCEEEEEec
Q 026118          152 YFANGVALSEDERFLVVCESWKFRCVKHFLKVSGRTDREIFID--NLP----GGPDNVNLARDGSFWISIIK  217 (243)
Q Consensus       152 ~~~~gi~~~~dg~~l~v~~~~~~~i~~~~~~~~~~~~~~~~~~--~~~----~~~~~i~~d~~G~lwv~~~~  217 (243)
                      .....+..+++|+ ||++..  +.|++++..+...    .+..  ...    .....|+.|++|+||+++..
T Consensus       498 ~~i~~i~~d~~g~-lWigt~--~Gl~~~~~~~~~~----~~~~~~~~~~l~~~~i~~i~~d~~g~lWigT~~  562 (795)
T 4a2l_A          498 KQITTLFRDSHKR-LWIGGE--EGLSVFKQEGLDI----QKASILPVSNVTKLFTNCIYEASNGIIWVGTRE  562 (795)
T ss_dssp             CCEEEEEECTTCC-EEEEES--SCEEEEEEETTEE----EECCCSCSCGGGGSCEEEEEECTTSCEEEEESS
T ss_pred             ceEEEEEECCCCC-EEEEeC--CceEEEeCCCCeE----EEecCCCCCCCCCCeeEEEEECCCCCEEEEeCC
Confidence            3356788999998 999975  6799999876432    1210  111    23445889999999999976

>3m0c_C LDL receptor, low-density lipoprotein receptor; protein complex, beta propeller, cholesterol clearance, PCSK autocatalytic cleavage; 7.01A {Homo sapiens}

Probab=99.67  E-value=2.4e-14  Score=128.51  Aligned_cols=186  Identities=11%  Similarity=0.083  Sum_probs=130.9

Q ss_pred             cCCcccEEEcC-CCcEEEEe-CCCcEEEEccCCc-----eeEe-cccCCccccceEEccCCCEEEEEeCCC-cEEEEecC
Q 026118            9 VNHPEDVSVDG-NGVLYTAT-GDGWIKRMHPNGT-----WEDW-HQVGSQSLLGLTTTKENNVIIVCDSQQ-GLLKVSEE   79 (243)
Q Consensus         9 ~~~p~~i~~d~-~g~l~~~~-~~~~i~~~~~~g~-----~~~~-~~~~~~~~~~i~~~~~g~l~~v~~~~~-gl~~~~~~   79 (243)
                      +..|.+|++|. +++||+++ ..+.|++++.++.     .... ......|. +|++|..++.||+++... .|.+++.+
T Consensus       423 ~~~~~gl~~d~~~~~lY~sD~~~~~I~~~~l~g~~~~~~~~~vi~~~l~~P~-GLAvD~~~~~LY~tD~~~~~I~v~~ld  501 (791)
T 3m0c_C          423 LRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRDIQAPD-GLAVDWIHSNIYWTDSVLGTVSVADTK  501 (791)
T ss_dssp             CSSEEEEEEETTTTEEEEEETTTTEEEEEEC--------CEEEECSSCSCCC-EEEEETTTTEEEEEETTTTEEEEEETT
T ss_pred             CCceEEEeecccCCeeEEeeccceeEEEEeccCCCCCcceeEEEecCCCCcc-eeeeeecCCcEEEEecCCCeEEEEeCC
Confidence            67899999996 77899998 6678999986542     2222 22345688 999997765449988654 57788855


Q ss_pred             C--cEEEEeccCCCcccCCccEEEcCC-CcEEEEeCCCCCCcccccccccccCCCceEEEEeCCCCeeEEee-ccccccc
Q 026118           80 G--VTVLVSQFNGSQLRFANDVIEASD-GSLYFTVSSTKFTPAEYYLDLVSGEPHGVLLKYDPSTNQTSLVL-DGLYFAN  155 (243)
Q Consensus        80 g--~~~~~~~~~~~~~~~~~~l~~d~~-G~l~v~~~~~~~~~~~~~~~~~~~~~~g~v~~~~~~~~~~~~~~-~~~~~~~  155 (243)
                      |  .+.+..    .....|.+|++|+. |.||+++.+                ....|+++++++...+.+. ..+..|+
T Consensus       502 G~~~~~l~~----~~l~~P~gIaVDp~~g~LYwtD~g----------------~~~~I~~~~~dG~~~~~lv~~~l~~P~  561 (791)
T 3m0c_C          502 GVKRKTLFR----ENGSKPRAIVVDPVHGFMYWTDWG----------------TPAKIKKGGLNGVDIYSLVTENIQWPN  561 (791)
T ss_dssp             SSSEEEEEE----CTTCCEEEEEEETTTTEEEEEECS----------------SSCEEEEEETTSCCEEEEECSSCSCEE
T ss_pred             CCeEEEEEe----CCCCCcceEEEecCCCCEEEecCC----------------CCCeEEEEecCCCceEEEEeCCCCCce
Confidence            6  334432    12356899999985 889999754                1257999999855544443 4568899


Q ss_pred             eEEEcCCCCEEEEEEcCCCeEEEEEeecCCCcceEEeccC--CCCCCCceEECCCCCEEEEEecCC
Q 026118          156 GVALSEDERFLVVCESWKFRCVKHFLKVSGRTDREIFIDN--LPGGPDNVNLARDGSFWISIIKMD  219 (243)
Q Consensus       156 gi~~~~dg~~l~v~~~~~~~i~~~~~~~~~~~~~~~~~~~--~~~~~~~i~~d~~G~lwv~~~~~~  219 (243)
                      ||++++.++.|||++...+.|.++++++..   .+.+...  ....|.+|+++. ++||++++..+
T Consensus       562 GLavD~~~~~LYwaD~~~~~I~~~d~dG~~---~~~v~~~~~~l~~P~glav~~-~~lYwtD~~~~  623 (791)
T 3m0c_C          562 GITLDLLSGRLYWVDSKLHSISSIDVNGGN---RKTILEDEKRLAHPFSLAVFE-DKVFWTDIINE  623 (791)
T ss_dssp             EEEEETTTTEEEEEETTTTEEEEEETTSCS---CEEEEECTTTTSSEEEEEEET-TEEEEEETTTT
T ss_pred             EEEEecCCCeEEEEeCCCCcEEEEecCCCc---eEEEecCCCccCCCCEEEEeC-CEEEEEECCCC
Confidence            999998777899999999999999987642   2233222  223567788754 47999887654

>3g4e_A Regucalcin; six bladed beta-propeller, gluconolcatonase, organophosphate hydrolase, calcium bound, alternative splicing, cytoplasm, phosphoprotein; 1.42A {Homo sapiens} PDB: 3g4h_B

Probab=99.66  E-value=8.1e-15  Score=117.54  Aligned_cols=181  Identities=12%  Similarity=0.049  Sum_probs=125.2

Q ss_pred             CCcccEEEcCCCcEEEEeCCCcEEEEcc-CCceeEeccc-----CCccccceEEccCCCEEEEEeCC------------C
Q 026118           10 NHPEDVSVDGNGVLYTATGDGWIKRMHP-NGTWEDWHQV-----GSQSLLGLTTTKENNVIIVCDSQ------------Q   71 (243)
Q Consensus        10 ~~p~~i~~d~~g~l~~~~~~~~i~~~~~-~g~~~~~~~~-----~~~~~~~i~~~~~g~l~~v~~~~------------~   71 (243)
                      ..|.+++++++|+||++. ..+|++++. +++++.+...     ...++ +++++++|++ |+++..            .
T Consensus        54 ~~~~~i~~~~dG~l~v~~-~~~l~~~d~~~g~~~~~~~~~~~~~~~~~~-di~~d~dG~l-~~~~~~~~~~~~~~~~~~~  130 (297)
T 3g4e_A           54 APVSSVALRQSGGYVATI-GTKFCALNWKEQSAVVLATVDNDKKNNRFN-DGKVDPAGRY-FAGTMAEETAPAVLERHQG  130 (297)
T ss_dssp             SCEEEEEEBTTSSEEEEE-TTEEEEEETTTTEEEEEEECCTTCSSEEEE-EEEECTTSCE-EEEEEECCSBTTBCCTTCE
T ss_pred             CceEEEEECCCCCEEEEE-CCeEEEEECCCCcEEEEEecCCCCCCCCCC-CEEECCCCCE-EEecCCcccccccccCCCc
Confidence            368889999999999997 568999995 5666554322     12356 8999999998 998732            3


Q ss_pred             cEEEEecCC-cEEEEeccCCCcccCCccEEEcCCCc-EEEEeCCCCCCcccccccccccCCCceEEEEeC--CCCeeE--
Q 026118           72 GLLKVSEEG-VTVLVSQFNGSQLRFANDVIEASDGS-LYFTVSSTKFTPAEYYLDLVSGEPHGVLLKYDP--STNQTS--  145 (243)
Q Consensus        72 gl~~~~~~g-~~~~~~~~~~~~~~~~~~l~~d~~G~-l~v~~~~~~~~~~~~~~~~~~~~~~g~v~~~~~--~~~~~~--  145 (243)
                      +|++++.++ ...+...     ...+++++++++|+ +|++++.                 .+.|++++.  .++.+.  
T Consensus       131 ~l~~~d~~g~~~~~~~~-----~~~pngi~~spdg~~lyv~~~~-----------------~~~i~~~~~d~~~G~~~~~  188 (297)
T 3g4e_A          131 ALYSLFPDHHVKKYFDQ-----VDISNGLDWSLDHKIFYYIDSL-----------------SYSVDAFDYDLQTGQISNR  188 (297)
T ss_dssp             EEEEECTTSCEEEEEEE-----ESBEEEEEECTTSCEEEEEEGG-----------------GTEEEEEEECTTTCCEEEE
T ss_pred             EEEEEECCCCEEEEeec-----cccccceEEcCCCCEEEEecCC-----------------CCcEEEEeccCCCCcccCc
Confidence            588888656 4433321     24678999999986 8888643                 347887764  456542  


Q ss_pred             -Eee---ccccccceEEEcCCCCEEEEEEcCCCeEEEEEeecCCCcceEEeccCCCCCCCceEEC-CCCC-EEEEEecCC
Q 026118          146 -LVL---DGLYFANGVALSEDERFLVVCESWKFRCVKHFLKVSGRTDREIFIDNLPGGPDNVNLA-RDGS-FWISIIKMD  219 (243)
Q Consensus       146 -~~~---~~~~~~~gi~~~~dg~~l~v~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~i~~d-~~G~-lwv~~~~~~  219 (243)
                       .+.   .....|.+|+++++|+ ||++....+.|.+|+++++.+  ...+. .....|.++++. ++++ |||++...+
T Consensus       189 ~~~~~~~~~~~~p~g~~~d~~G~-lwva~~~~~~v~~~d~~tG~~--~~~i~-~p~~~~t~~~f~g~d~~~L~vt~~~~~  264 (297)
T 3g4e_A          189 RSVYKLEKEEQIPDGMCIDAEGK-LWVACYNGGRVIRLDPVTGKR--LQTVK-LPVDKTTSCCFGGKNYSEMYVTCARDG  264 (297)
T ss_dssp             EEEEECCGGGCEEEEEEEBTTSC-EEEEEETTTEEEEECTTTCCE--EEEEE-CSSSBEEEEEEESGGGCEEEEEEBCTT
T ss_pred             EEEEECCCCCCCCCeeEECCCCC-EEEEEcCCCEEEEEcCCCceE--EEEEE-CCCCCceEEEEeCCCCCEEEEEcCCcC
Confidence             222   2235789999999998 999988888999999864322  12221 122467889997 6665 999987654

>3das_A Putative oxidoreductase; aldose sugar dehydrogenase, beta propellor, PQQ, SGDH; HET: MSE ARA PQQ; 1.60A {Streptomyces coelicolor}

Probab=99.66  E-value=4.6e-14  Score=114.88  Aligned_cols=163  Identities=17%  Similarity=0.203  Sum_probs=105.9

Q ss_pred             ceecccccCCcccEEEcCCCcEEEEeC-CCcEEEEcc-CCceeEec-------ccCCccccceEEccC----CCEEEEEe
Q 026118            2 IKLGEGIVNHPEDVSVDGNGVLYTATG-DGWIKRMHP-NGTWEDWH-------QVGSQSLLGLTTTKE----NNVIIVCD   68 (243)
Q Consensus         2 ~~~~~g~~~~p~~i~~d~~g~l~~~~~-~~~i~~~~~-~g~~~~~~-------~~~~~~~~~i~~~~~----g~l~~v~~   68 (243)
                      +.+++| +..|.+|++.++|+||++.. .|+|+++++ +++...+.       .....++ +|+++|+    |.+ |++.
T Consensus        25 ~~va~g-L~~P~~ia~~pdG~llVter~~G~I~~v~~~~g~~~~v~~~~~v~~~g~~Gll-Gia~~Pdf~~~g~l-Yv~y  101 (347)
T 3das_A           25 RTVATG-LNSPWGLAPLPGGDLLVSSRDEATITRVDAKTGRKTELGEVPGVSPSGEGGLL-GIALSPDYASDHMV-YAYF  101 (347)
T ss_dssp             EEEECC-CSSEEEEEECTTSCEEEEETTTCEEEEECTTTCCEEEEEECTTCCCBTTBSEE-EEEECTTHHHHCEE-EEEE
T ss_pred             EEeecC-CCCceEEEEcCCCcEEEEEecCCEEEEEECCCCcEeeecccCceeecCCCCce-eeEeccccccCCEE-EEEE
Confidence            467776 99999999999999999996 899999985 45544332       1123456 8999984    666 8863


Q ss_pred             ---CCCcEEEEe-cC-----C----cEEEEeccCCCcccCCccEEEcCCCcEEEEeCCCCCCcccccccccccCCCceEE
Q 026118           69 ---SQQGLLKVS-EE-----G----VTVLVSQFNGSQLRFANDVIEASDGSLYFTVSSTKFTPAEYYLDLVSGEPHGVLL  135 (243)
Q Consensus        69 ---~~~gl~~~~-~~-----g----~~~~~~~~~~~~~~~~~~l~~d~~G~l~v~~~~~~~~~~~~~~~~~~~~~~g~v~  135 (243)
                         ....|+++. ..     .    .+.+..............|++++||.||++.-.....  .  .........++|+
T Consensus       102 t~~~~~~v~R~~~~~~~~~~~~~~~~~~i~~~~p~~~~H~g~~l~fgpDG~Lyvt~Gd~~~~--~--~~qd~~~~~G~Il  177 (347)
T 3das_A          102 TSASDNRIVRMLYDEKKPSGEQLGAPDTVFRGIPKGVIHNGGRIAFGPDKMLYAGTGESGDT--G--LSQDRKSLGGKIL  177 (347)
T ss_dssp             ECSSSEEEEEEEBCTTSCTTCCBCCCEEEEEEECCCSSCCCCCEEECTTSCEEEECBCTTCG--G--GTTCTTCSTTCEE
T ss_pred             ecCCCCEEEEEEeCCCCcccccCCCcEEEEEcCCCCCCccCccccCCCCCCEEEEECCCCCC--c--cccCCCCCCCEEE
Confidence               235688887 32     1    3344332322233456789999999999985321100  0  0001123457899


Q ss_pred             EEeCCCC--------eeEEeeccccccceEEEcCCCCEEEEEEcC
Q 026118          136 KYDPSTN--------QTSLVLDGLYFANGVALSEDERFLVVCESW  172 (243)
Q Consensus       136 ~~~~~~~--------~~~~~~~~~~~~~gi~~~~dg~~l~v~~~~  172 (243)
                      |+++++.        ..+.+..++..|.+|+++++|+ ||+++..
T Consensus       178 Ri~~dG~ip~~nPf~~~~i~a~G~RNp~Gla~dp~G~-L~~~d~g  221 (347)
T 3das_A          178 RMTPDGEPAPGNPFPGSPVYSYGHRNVQGLAWDDKQR-LFASEFG  221 (347)
T ss_dssp             EECTTSSBCTTCSSTTCCEEEBCCSBCCEEEECTTCC-EEEEECC
T ss_pred             EEeCCCCccCCCCCCCCeEEeeCCCCcceEEECCCCC-EEEEecC
Confidence            9998843        2234455667788888888877 8887653

>4a0p_A LRP6, LRP-6, low-density lipoprotein receptor-related protein; signaling, WNT signalling, WNT3A, DKK1, MESD; HET: NAG; 1.90A {Homo sapiens} PDB: 3s2k_A* 3s8z_A* 3s8v_A*

Probab=99.66  E-value=2.1e-14  Score=126.31  Aligned_cols=188  Identities=14%  Similarity=0.104  Sum_probs=135.6

Q ss_pred             ccCCcccEEEcC-CCcEEEEe-CCCcEEEEccCCce--eEecc------cCCccccceEEccCCCEEEEEeCCCc-EEEE
Q 026118            8 IVNHPEDVSVDG-NGVLYTAT-GDGWIKRMHPNGTW--EDWHQ------VGSQSLLGLTTTKENNVIIVCDSQQG-LLKV   76 (243)
Q Consensus         8 ~~~~p~~i~~d~-~g~l~~~~-~~~~i~~~~~~g~~--~~~~~------~~~~~~~~i~~~~~g~l~~v~~~~~g-l~~~   76 (243)
                      .+..+.+|.+|+ ++.||+++ ..++|++++.+|..  ..+..      ....|. +|++|..++.||+++...+ |.++
T Consensus       338 ~~~~~~~ld~d~~~~~iy~sD~~~~~I~r~~~~g~~~~~v~~~~~~~~~~~~~p~-glAvD~~~~nLY~td~~~~~I~v~  416 (628)
T 4a0p_A          338 SLRNVRAIDYDPLDKQLYWIDSRQNMIRKAQEDGSQGFTVVVSSVPSQNLEIQPY-DLSIDIYSRYIYWTCEATNVINVT  416 (628)
T ss_dssp             TCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEEC--------CCCEE-EEEEETTTTEEEEEETTTTEEEEE
T ss_pred             hcCCceEEEEecCCCeEEEEecCcceEEEEEcCCCCceEEEEcccccccccCCcc-eEEeeccCCeEEEEcCCCCEEEEE
Confidence            367788899996 77999998 67889999876643  22222      234688 9999987654498886654 5555


Q ss_pred             ecCC-c-EEEEeccCCCcccCCccEEEcC-CCcEEEEeCCCCCCcccccccccccCCCceEEEEeCCCCeeEEee-cccc
Q 026118           77 SEEG-V-TVLVSQFNGSQLRFANDVIEAS-DGSLYFTVSSTKFTPAEYYLDLVSGEPHGVLLKYDPSTNQTSLVL-DGLY  152 (243)
Q Consensus        77 ~~~g-~-~~~~~~~~~~~~~~~~~l~~d~-~G~l~v~~~~~~~~~~~~~~~~~~~~~~g~v~~~~~~~~~~~~~~-~~~~  152 (243)
                      +.+| . +.+...    ....|.+|+++| .|.||+++.+.               ....|++.++++...+.+. ..+.
T Consensus       417 ~~~G~~~~~l~~~----~l~~Pr~iavdp~~g~ly~tD~g~---------------~~~~I~r~~~dG~~~~~l~~~~l~  477 (628)
T 4a0p_A          417 RLDGRSVGVVLKG----EQDRPRAVVVNPEKGYMYFTNLQE---------------RSPKIERAALDGTEREVLFFSGLS  477 (628)
T ss_dssp             ETTSCEEEEEEEC----TTCCEEEEEEETTTTEEEEEEEET---------------TEEEEEEEETTSCSCEEEECSSCS
T ss_pred             ECCCCeEEEEEeC----CCCceeeEEEecCCCeEEEeecCC---------------CCCeEEEEeCCCCCcEEEEeccCC
Confidence            6666 3 333321    245789999999 89999997531               1137999999955454443 4578


Q ss_pred             ccceEEEcCCCCEEEEEEcCCCeEEEEEeecCCCcceEEeccCCCCCCCceEECCCCCEEEEEecCC
Q 026118          153 FANGVALSEDERFLVVCESWKFRCVKHFLKVSGRTDREIFIDNLPGGPDNVNLARDGSFWISIIKMD  219 (243)
Q Consensus       153 ~~~gi~~~~dg~~l~v~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~i~~d~~G~lwv~~~~~~  219 (243)
                      .|+||++|++++.|||++...+.|.++++++.   ..+.+.......|.+|+++. ++||++++...
T Consensus       478 ~P~gla~D~~~~~LYw~D~~~~~I~~~~~dG~---~r~~~~~~~~~~P~glav~~-~~ly~tD~~~~  540 (628)
T 4a0p_A          478 KPIALALDSRLGKLFWADSDLRRIESSDLSGA---NRIVLEDSNILQPVGLTVFE-NWLYWIDKQQQ  540 (628)
T ss_dssp             CEEEEEEETTTTEEEEEETTTTEEEEEETTSC---SCEEEECSSCSCEEEEEEET-TEEEEEETTTT
T ss_pred             CccEEEEeCCCCEEEEEeCCCCEEEEEeCCCC---ceEEEEcCCCCCcEEEEEEC-CEEEEEECCCC
Confidence            89999999988789999999999999999763   23444333345799999986 78999987654

>4hw6_A Hypothetical protein, IPT/TIG domain protein; putative carbohydrate bindning two domains protein, IPT/TIG (PF01833), 6-beta-propeller; HET: MSE; 1.70A {Bacteroides ovatus}

Probab=99.65  E-value=1.1e-14  Score=122.86  Aligned_cols=185  Identities=10%  Similarity=0.070  Sum_probs=125.5

Q ss_pred             ccCCcccEEEcCCCcEEEEeCC-----CcEEEEccCCcee--EecccCCccccceEEcc-CCCEEEEEeCCC-cEEEEe-
Q 026118            8 IVNHPEDVSVDGNGVLYTATGD-----GWIKRMHPNGTWE--DWHQVGSQSLLGLTTTK-ENNVIIVCDSQQ-GLLKVS-   77 (243)
Q Consensus         8 ~~~~p~~i~~d~~g~l~~~~~~-----~~i~~~~~~g~~~--~~~~~~~~~~~~i~~~~-~g~l~~v~~~~~-gl~~~~-   77 (243)
                      .+..|.+|++|++|.||+++..     .+++.++..+.+.  ........|. ++++++ +|++ |+++... .|++++ 
T Consensus       180 ~~~~P~giavd~dG~lyVad~~~~~~~~gv~~~~~~~~~~~~~~~~~~~~P~-giavd~~~G~l-yv~d~~~~~V~~~d~  257 (433)
T 4hw6_A          180 NIGQCADVNFTLNGDMVVVDDQSSDTNTGIYLFTRASGFTERLSLCNARGAK-TCAVHPQNGKI-YYTRYHHAMISSYDP  257 (433)
T ss_dssp             CCSCEEEEEECTTCCEEEEECCSCTTSEEEEEECGGGTTCCEEEEEECSSBC-CCEECTTTCCE-EECBTTCSEEEEECT
T ss_pred             CCCCccEEEECCCCCEEEEcCCCCcccceEEEEECCCCeeccccccccCCCC-EEEEeCCCCeE-EEEECCCCEEEEEEC
Confidence            4678999999999999999842     3467776443322  1111235678 999999 8888 9998654 589999 


Q ss_pred             cCC-c-EEEEeccCCCcccCCccEEEcCCCc-EEEEeCCCCCCcccccccccccCCCceEEEEeCC--CCee---EEeec
Q 026118           78 EEG-V-TVLVSQFNGSQLRFANDVIEASDGS-LYFTVSSTKFTPAEYYLDLVSGEPHGVLLKYDPS--TNQT---SLVLD  149 (243)
Q Consensus        78 ~~g-~-~~~~~~~~~~~~~~~~~l~~d~~G~-l~v~~~~~~~~~~~~~~~~~~~~~~g~v~~~~~~--~~~~---~~~~~  149 (243)
                      .++ . ..+....   ....+.+|+++++|+ ||+++..                 ...|++++.+  ++++   ..+..
T Consensus       258 ~~g~~~~~~~~~~---~~~~~~~ia~dpdG~~LYvad~~-----------------~~~I~~~~~d~~~~~~~~~~~~ag  317 (433)
T 4hw6_A          258 ATGTLTEEEVMMD---TKGSNFHIVWHPTGDWAYIIYNG-----------------KHCIYRVDYNRETGKLAVPYIVCG  317 (433)
T ss_dssp             TTCCEEEEEEECS---CCSSCEEEEECTTSSEEEEEETT-----------------TTEEEEEEBCTTTCCBCCCEEEEE
T ss_pred             CCCeEEEEEeccC---CCCCcccEEEeCCCCEEEEEeCC-----------------CCEEEEEeCCCCCcccCcEEEEEe
Confidence            446 4 3443211   123345799999997 9999754                 3478887754  3322   12221


Q ss_pred             ---------------cccccceEEE---------cCCCCEEEEEEcCCCeEEEEEeecCCCcceEEecc-----------
Q 026118          150 ---------------GLYFANGVAL---------SEDERFLVVCESWKFRCVKHFLKVSGRTDREIFID-----------  194 (243)
Q Consensus       150 ---------------~~~~~~gi~~---------~~dg~~l~v~~~~~~~i~~~~~~~~~~~~~~~~~~-----------  194 (243)
                                     .+..|.+|++         +++|+ |||++..+++|.++++++    ....+..           
T Consensus       318 ~~g~~g~~dg~~~~a~~~~P~giav~~n~~y~~dd~~g~-lyvaD~~n~~I~~~~~~G----~v~t~~G~g~~~~~G~~d  392 (433)
T 4hw6_A          318 QHSSPGWVDGMGTGARLWGPNQGIFVKNEAYAGEEDEYD-FYFCDRDSHTVRVLTPEG----RVTTYAGRGNSREWGYVD  392 (433)
T ss_dssp             CTTCCCCBCEEGGGSBCSSEEEEEEEECGGGTTSSCCEE-EEEEETTTTEEEEECTTS----EEEEEECCCTTCSSCCBC
T ss_pred             cCCCCccCCCcccceEEcCCccEEEEccccccccCCCCc-EEEEECCCCEEEEECCCC----CEEEEEeCCCCCccccCC
Confidence                           1356889999         77777 999999999999998643    1222110           


Q ss_pred             C------CCCCCCceEEC-CCCCEEEEEecCC
Q 026118          195 N------LPGGPDNVNLA-RDGSFWISIIKMD  219 (243)
Q Consensus       195 ~------~~~~~~~i~~d-~~G~lwv~~~~~~  219 (243)
                      .      ....|.+|++| ++|+|||++..++
T Consensus       393 G~~~~~~~~~~P~giavd~~~g~lyVaD~~n~  424 (433)
T 4hw6_A          393 GELRSQALFNHPTSIAYDMKRKCFYIGDCDNH  424 (433)
T ss_dssp             EETTTTCBCSSEEEEEEETTTTEEEEEEGGGT
T ss_pred             CccccccEeCCCcEEEEECCCCEEEEEeCCCC
Confidence            0      12358999999 8999999997654

>2g8s_A Glucose/sorbosone dehydrogenases; bladed beta-propellor, pyrolloquinoline quinone (PQQ), quinoprotein, sugar binding protein; HET: MSE; 1.50A {Escherichia coli K12}

Probab=99.65  E-value=1.1e-14  Score=119.69  Aligned_cols=108  Identities=10%  Similarity=0.160  Sum_probs=73.1

Q ss_pred             ceecccccCCcccEEEcCCCc-EEEEeCCCcEEEEccCCceeE-ec-------ccCCccccceEEccC----CCEEEEEe
Q 026118            2 IKLGEGIVNHPEDVSVDGNGV-LYTATGDGWIKRMHPNGTWED-WH-------QVGSQSLLGLTTTKE----NNVIIVCD   68 (243)
Q Consensus         2 ~~~~~g~~~~p~~i~~d~~g~-l~~~~~~~~i~~~~~~g~~~~-~~-------~~~~~~~~~i~~~~~----g~l~~v~~   68 (243)
                      ++++++ +..|.+|+++++|+ ||+++..++|++++.+++... +.       .....+. +|+++++    +.+ |++.
T Consensus        11 ~~va~~-l~~P~~i~~~pdG~~l~V~e~~G~i~~~~~~g~~~~~~~~~~~v~~~g~~g~~-gia~~pdf~~~g~l-Yv~~   87 (353)
T 2g8s_A           11 EVLQDK-LDHPWALAFLPDNHGMLITLRGGELRHWQAGKGLSAPLSGVPDVWAHGQGGLL-DVVLAPDFAQSRRI-WLSY   87 (353)
T ss_dssp             EEEEEE-ESSEEEEEECSTTCCEEEEETTTEEEEEETTTEECCCCBSCCCCCCSTTCSEE-EEEECTTHHHHCEE-EEEE
T ss_pred             EEEECC-CCCcEEEEEcCCCCEEEEEeCCceEEEEeCCCceeeEecCCcccccCCCCCce-eEEECCCCCCCCEE-EEEE
Confidence            456664 89999999999999 999998899999987665431 11       1123356 8999984    666 9986


Q ss_pred             CC--------CcEEEEe-cC--C-c---EEEEeccCC--CcccCCccEEEcCCCcEEEEeC
Q 026118           69 SQ--------QGLLKVS-EE--G-V---TVLVSQFNG--SQLRFANDVIEASDGSLYFTVS  112 (243)
Q Consensus        69 ~~--------~gl~~~~-~~--g-~---~~~~~~~~~--~~~~~~~~l~~d~~G~l~v~~~  112 (243)
                      ..        ..|.+++ ..  + .   +.+......  .....+.+|++++||.||+++.
T Consensus        88 ~~~~~~g~~~~~v~r~~~~~~~~~~~~~~~i~~~~p~~~~~~h~~~~l~~~pdG~Lyv~~G  148 (353)
T 2g8s_A           88 SEVGDDGKAGTAVGYGRLSDDLSKVTDFRTVFRQMPKLSTGNHFGGRLVFDGKGYLFIALG  148 (353)
T ss_dssp             EEECSSSCEEEEEEEEEECTTSSBEEEEEEEEECSSCCBSSSCCCCCEEECSSSEEEEEEC
T ss_pred             eCCCCCCCceeEEEEEEECCCCCCCCceEEEEEECCCCCCCcccCccEEECCCCcEEEEEC
Confidence            42        2588876 32  2 2   222222221  1234577899999999999964

>3vgz_A Uncharacterized protein YNCE; beta-propeller, protein binding; 1.70A {Escherichia coli} PDB: 3vh0_A*

Probab=99.64  E-value=1.5e-13  Score=111.84  Aligned_cols=186  Identities=15%  Similarity=0.165  Sum_probs=130.1

Q ss_pred             cccEEEcCCCc-EEEEe--CCCcEEEEcc-CCceeEecc-cCCccccceEEccCCCEEEEEeCCCcEEEEe-cCC-cEEE
Q 026118           12 PEDVSVDGNGV-LYTAT--GDGWIKRMHP-NGTWEDWHQ-VGSQSLLGLTTTKENNVIIVCDSQQGLLKVS-EEG-VTVL   84 (243)
Q Consensus        12 p~~i~~d~~g~-l~~~~--~~~~i~~~~~-~g~~~~~~~-~~~~~~~~i~~~~~g~l~~v~~~~~gl~~~~-~~g-~~~~   84 (243)
                      |.+++++++|. +|++.  .++.|+.++. +++...... ....+. +++++++|+.+|++...+.++.+| .++ ....
T Consensus       143 ~~~~~~s~dg~~l~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~-~~~~s~dg~~l~~~~~~~~i~~~d~~~~~~~~~  221 (353)
T 3vgz_A          143 PRELVADDATNTVYISGIGKESVIWVVDGGNIKLKTAIQNTGKMST-GLALDSEGKRLYTTNADGELITIDTADNKILSR  221 (353)
T ss_dssp             EEEEEEETTTTEEEEEEESSSCEEEEEETTTTEEEEEECCCCTTCC-CCEEETTTTEEEEECTTSEEEEEETTTTEEEEE
T ss_pred             CceEEECCCCCEEEEEecCCCceEEEEcCCCCceEEEecCCCCccc-eEEECCCCCEEEEEcCCCeEEEEECCCCeEEEE
Confidence            78899999875 88887  3677999994 455443322 233467 999999999778888767789999 666 3322


Q ss_pred             EeccCCCcccCCccEEEcCCCc-EEEEeCCCCCCcccccccccccCCCceEEEEeCCCCeeEEeeccccccceEEEcCCC
Q 026118           85 VSQFNGSQLRFANDVIEASDGS-LYFTVSSTKFTPAEYYLDLVSGEPHGVLLKYDPSTNQTSLVLDGLYFANGVALSEDE  163 (243)
Q Consensus        85 ~~~~~~~~~~~~~~l~~d~~G~-l~v~~~~~~~~~~~~~~~~~~~~~~g~v~~~~~~~~~~~~~~~~~~~~~gi~~~~dg  163 (243)
                      ...........+.+++++++|+ +|+++..                 .+.|+.+|..+++...... ...+.+++++++|
T Consensus       222 ~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~-----------------~~~v~~~d~~~~~~~~~~~-~~~~~~~~~s~dg  283 (353)
T 3vgz_A          222 KKLLDDGKEHFFINISLDTARQRAFITDSK-----------------AAEVLVVDTRNGNILAKVA-APESLAVLFNPAR  283 (353)
T ss_dssp             EECCCSSSCCCEEEEEEETTTTEEEEEESS-----------------SSEEEEEETTTCCEEEEEE-CSSCCCEEEETTT
T ss_pred             EEcCCCCCCcccceEEECCCCCEEEEEeCC-----------------CCEEEEEECCCCcEEEEEE-cCCCceEEECCCC
Confidence            2211111234567789999987 7777432                 3689999998887654433 2345789999999


Q ss_pred             CEEEEEEcCCCeEEEEEeecCCCcceEEeccCCCCCCCceEECCCCC-EEEEEecCCc
Q 026118          164 RFLVVCESWKFRCVKHFLKVSGRTDREIFIDNLPGGPDNVNLARDGS-FWISIIKMDP  220 (243)
Q Consensus       164 ~~l~v~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~i~~d~~G~-lwv~~~~~~~  220 (243)
                      +++|++...++.|..++.....  ....+  .....|.+++++++|+ ||++..++..
T Consensus       284 ~~l~v~~~~~~~v~~~d~~~~~--~~~~~--~~~~~~~~~~~s~dg~~l~v~~~~~~~  337 (353)
T 3vgz_A          284 NEAYVTHRQAGKVSVIDAKSYK--VVKTF--DTPTHPNSLALSADGKTLYVSVKQKST  337 (353)
T ss_dssp             TEEEEEETTTTEEEEEETTTTE--EEEEE--ECCSEEEEEEECTTSCEEEEEEECCCB
T ss_pred             CEEEEEECCCCeEEEEECCCCe--EEEEE--ecCCCCCeEEEcCCCCEEEEEEccccc
Confidence            9999998888999999976432  12222  1234688899999998 8998876543

>3v9f_A Two-component system sensor histidine kinase/RESP regulator, hybrid (ONE-component...; beta-propeller, beta-sandwich; 3.30A {Bacteroides thetaiotaomicron}

Probab=99.63  E-value=6.9e-15  Score=132.80  Aligned_cols=179  Identities=12%  Similarity=0.089  Sum_probs=125.1

Q ss_pred             CcccEEEcCCCcEEEEeCCCcEEEEccCC-ceeEecc----cCCccccceEEccCCCEEEEEeCCCcEEEEe-cCC-cEE
Q 026118           11 HPEDVSVDGNGVLYTATGDGWIKRMHPNG-TWEDWHQ----VGSQSLLGLTTTKENNVIIVCDSQQGLLKVS-EEG-VTV   83 (243)
Q Consensus        11 ~p~~i~~d~~g~l~~~~~~~~i~~~~~~g-~~~~~~~----~~~~~~~~i~~~~~g~l~~v~~~~~gl~~~~-~~g-~~~   83 (243)
                      ...+|+.|++|.||+++.+++|+++++.. ++..+..    ...... +|+.|++|++ |+++...||++++ .++ ++.
T Consensus       364 ~v~~i~~d~~g~lWigt~~~Gl~~~~~~~~~~~~~~~~~~~~~~~v~-~i~~d~~g~l-Wigt~~~Gl~~~~~~~~~~~~  441 (781)
T 3v9f_A          364 VVSSVCDDGQGKLWIGTDGGGINVFENGKRVAIYNKENRELLSNSVL-CSLKDSEGNL-WFGTYLGNISYYNTRLKKFQI  441 (781)
T ss_dssp             CEEEEEECTTSCEEEEEBSSCEEEEETTEEEEECC-----CCCSBEE-EEEECTTSCE-EEEETTEEEEEECSSSCEEEE
T ss_pred             ceEEEEEcCCCCEEEEeCCCcEEEEECCCCeEEEccCCCCCCCcceE-EEEECCCCCE-EEEeccCCEEEEcCCCCcEEE
Confidence            35678899999999999888899998543 3333321    112234 7888999999 9999778999999 556 544


Q ss_pred             EEeccCCCcccCCccEEEcCCCcEEEEeCCCCCCcccccccccccCCCceEEEEeCCCCeeEEeecc------ccccceE
Q 026118           84 LVSQFNGSQLRFANDVIEASDGSLYFTVSSTKFTPAEYYLDLVSGEPHGVLLKYDPSTNQTSLVLDG------LYFANGV  157 (243)
Q Consensus        84 ~~~~~~~~~~~~~~~l~~d~~G~l~v~~~~~~~~~~~~~~~~~~~~~~g~v~~~~~~~~~~~~~~~~------~~~~~gi  157 (243)
                      +...  ......+.+++.|++|++|+++.                   ++|+++++++++++.+...      ......|
T Consensus       442 ~~~~--~~~~~~v~~i~~d~~g~lwigt~-------------------~Gl~~~~~~~~~~~~~~~~~~~~~~~~~i~~i  500 (781)
T 3v9f_A          442 IELE--KNELLDVRVFYEDKNKKIWIGTH-------------------AGVFVIDLASKKVIHHYDTSNSQLLENFVRSI  500 (781)
T ss_dssp             CCST--TTCCCCEEEEEECTTSEEEEEET-------------------TEEEEEESSSSSCCEEECTTTSSCSCSCEEEE
T ss_pred             eccC--CCCCCeEEEEEECCCCCEEEEEC-------------------CceEEEeCCCCeEEecccCcccccccceeEEE
Confidence            3221  22234677889999999999953                   3799999988777655421      2345688


Q ss_pred             EEcCCCCEEEEEEcCCCeEEEEEeecCCCcceEEeccCCCCC----CCceEECCCCCEEEEEecC
Q 026118          158 ALSEDERFLVVCESWKFRCVKHFLKVSGRTDREIFIDNLPGG----PDNVNLARDGSFWISIIKM  218 (243)
Q Consensus       158 ~~~~dg~~l~v~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~----~~~i~~d~~G~lwv~~~~~  218 (243)
                      +.+++|+ ||++.. .+.|++++.+..   ..+.+.. ..+.    ...|+.|++|+||+++..|
T Consensus       501 ~~d~~g~-lWigt~-~~Gl~~~~~~~~---~~~~~~~-~~~l~~~~i~~i~~d~~g~lWi~T~~G  559 (781)
T 3v9f_A          501 AQDSEGR-FWIGTF-GGGVGIYTPDMQ---LVRKFNQ-YEGFCSNTINQIYRSSKGQMWLATGEG  559 (781)
T ss_dssp             EECTTCC-EEEEES-SSCEEEECTTCC---EEEEECT-TTTCSCSCEEEEEECTTSCEEEEETTE
T ss_pred             EEcCCCC-EEEEEc-CCCEEEEeCCCC---eEEEccC-CCCCCCCeeEEEEECCCCCEEEEECCC
Confidence            9999998 999975 356999886543   2333321 2223    3458889999999999743

>3v9f_A Two-component system sensor histidine kinase/RESP regulator, hybrid (ONE-component...; beta-propeller, beta-sandwich; 3.30A {Bacteroides thetaiotaomicron}

Probab=99.63  E-value=2.6e-14  Score=129.04  Aligned_cols=185  Identities=11%  Similarity=0.085  Sum_probs=127.2

Q ss_pred             CcccEEEcCCCcEEEEeCCCcEEEEcc-CCceeEeccc----------CCccccceEEccCCCEEEEEeCCCcEEEEec-
Q 026118           11 HPEDVSVDGNGVLYTATGDGWIKRMHP-NGTWEDWHQV----------GSQSLLGLTTTKENNVIIVCDSQQGLLKVSE-   78 (243)
Q Consensus        11 ~p~~i~~d~~g~l~~~~~~~~i~~~~~-~g~~~~~~~~----------~~~~~~~i~~~~~g~l~~v~~~~~gl~~~~~-   78 (243)
                      ...+|+.|++|.||+++.+++|+++++ .+.+..+...          ..... +|+.|++|++ |+++...||+++++ 
T Consensus       314 ~v~~i~~D~~g~lWigt~~~Gl~~~~~~~~~~~~~~~~~~~~~~~~l~~~~v~-~i~~d~~g~l-Wigt~~~Gl~~~~~~  391 (781)
T 3v9f_A          314 SARYIFQDSFNNIWIGTWGGGINFISNAPPTFHTWSYSPTQMNESSLSNKVVS-SVCDDGQGKL-WIGTDGGGINVFENG  391 (781)
T ss_dssp             CEEEEEECSSCCEEEEEBSSCEEEECSSCCSCEEEC----CCCSSCCSSSCEE-EEEECTTSCE-EEEEBSSCEEEEETT
T ss_pred             eEEEEEEeCCCCEEEEecCCeEEEeCCCCCcceeeccCccccccCCCCCcceE-EEEEcCCCCE-EEEeCCCcEEEEECC
Confidence            345789999999999998889999984 4455544211          12233 7888999999 99997789999994 


Q ss_pred             CC-cEEEEeccCCCcccCCccEEEcCCCcEEEEeCCCCCCcccccccccccCCCceEEEEeCCCCeeEEeecc---cccc
Q 026118           79 EG-VTVLVSQFNGSQLRFANDVIEASDGSLYFTVSSTKFTPAEYYLDLVSGEPHGVLLKYDPSTNQTSLVLDG---LYFA  154 (243)
Q Consensus        79 ~g-~~~~~~~~~~~~~~~~~~l~~d~~G~l~v~~~~~~~~~~~~~~~~~~~~~~g~v~~~~~~~~~~~~~~~~---~~~~  154 (243)
                      ++ ...+.. ........+.+++.|++|+||+++..                  ++|+++++++++++.+...   ....
T Consensus       392 ~~~~~~~~~-~~~~~~~~v~~i~~d~~g~lWigt~~------------------~Gl~~~~~~~~~~~~~~~~~~~~~~v  452 (781)
T 3v9f_A          392 KRVAIYNKE-NRELLSNSVLCSLKDSEGNLWFGTYL------------------GNISYYNTRLKKFQIIELEKNELLDV  452 (781)
T ss_dssp             EEEEECC------CCCSBEEEEEECTTSCEEEEETT------------------EEEEEECSSSCEEEECCSTTTCCCCE
T ss_pred             CCeEEEccC-CCCCCCcceEEEEECCCCCEEEEecc------------------CCEEEEcCCCCcEEEeccCCCCCCeE
Confidence            44 333211 11222346778899999999999642                  5899999988887765431   2345


Q ss_pred             ceEEEcCCCCEEEEEEcCCCeEEEEEeecCCCcceEEecc--CCCCCCCceEECCCCCEEEEEecCC
Q 026118          155 NGVALSEDERFLVVCESWKFRCVKHFLKVSGRTDREIFID--NLPGGPDNVNLARDGSFWISIIKMD  219 (243)
Q Consensus       155 ~gi~~~~dg~~l~v~~~~~~~i~~~~~~~~~~~~~~~~~~--~~~~~~~~i~~d~~G~lwv~~~~~~  219 (243)
                      ..|+.+++|+ ||++..  +.|++++..+..+........  .....+..|+.|++|+||+++..++
T Consensus       453 ~~i~~d~~g~-lwigt~--~Gl~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~d~~g~lWigt~~~G  516 (781)
T 3v9f_A          453 RVFYEDKNKK-IWIGTH--AGVFVIDLASKKVIHHYDTSNSQLLENFVRSIAQDSEGRFWIGTFGGG  516 (781)
T ss_dssp             EEEEECTTSE-EEEEET--TEEEEEESSSSSCCEEECTTTSSCSCSCEEEEEECTTCCEEEEESSSC
T ss_pred             EEEEECCCCC-EEEEEC--CceEEEeCCCCeEEecccCcccccccceeEEEEEcCCCCEEEEEcCCC
Confidence            6788888887 999965  689999977544332221110  0123456689999999999997544

>3e5z_A Putative gluconolactonase; X-RAY NESG Q9RXN3 gluconolactonase, structural genomics, PSI protein structure initiative; 2.01A {Deinococcus radiodurans}

Probab=99.63  E-value=1.3e-13  Score=110.19  Aligned_cols=154  Identities=18%  Similarity=0.256  Sum_probs=111.6

Q ss_pred             cCCcccEEEcCCCcEEEEeC------------------CCcEEEEccCCceeEecccCCccccceEEccCCCEEEEEeCC
Q 026118            9 VNHPEDVSVDGNGVLYTATG------------------DGWIKRMHPNGTWEDWHQVGSQSLLGLTTTKENNVIIVCDSQ   70 (243)
Q Consensus         9 ~~~p~~i~~d~~g~l~~~~~------------------~~~i~~~~~~g~~~~~~~~~~~~~~~i~~~~~g~l~~v~~~~   70 (243)
                      +..|..+++|++|++|+++.                  .++|+++++++++..+......|. +++++++|+++ +++..
T Consensus       114 ~~~~~~i~~d~~G~l~vtd~~~g~~~~~~~~~~~~~~~~~~l~~~~~~g~~~~~~~~~~~~~-gi~~s~dg~~l-v~~~~  191 (296)
T 3e5z_A          114 LNSPNDVCLAPDGSLWFSDPTYGIDKPEEGYGGEMELPGRWVFRLAPDGTLSAPIRDRVKPN-GLAFLPSGNLL-VSDTG  191 (296)
T ss_dssp             CCCCCCEEECTTSCEEEEECSHHHHCGGGSSCCCCCSSSCEEEEECTTSCEEEEECCCSSEE-EEEECTTSCEE-EEETT
T ss_pred             CCCCCCEEECCCCCEEEECCccccccccccccccccCCCcEEEEECCCCCEEEeecCCCCCc-cEEECCCCCEE-EEeCC
Confidence            45788999999999999631                  458999997777766554445677 99999999985 66543


Q ss_pred             -CcEEEEe-c-CC-c-EEEEeccCCCcccCCccEEEcCCCcEEEEeCCCCCCcccccccccccCCCceEEEEeCCCCeeE
Q 026118           71 -QGLLKVS-E-EG-V-TVLVSQFNGSQLRFANDVIEASDGSLYFTVSSTKFTPAEYYLDLVSGEPHGVLLKYDPSTNQTS  145 (243)
Q Consensus        71 -~gl~~~~-~-~g-~-~~~~~~~~~~~~~~~~~l~~d~~G~l~v~~~~~~~~~~~~~~~~~~~~~~g~v~~~~~~~~~~~  145 (243)
                       ..|++++ . +| . .... .. ......|.+|++|++|++|+++                   .++|+++++++..+.
T Consensus       192 ~~~i~~~~~~~~g~~~~~~~-~~-~~~~~~p~~i~~d~~G~l~v~~-------------------~~~v~~~~~~g~~~~  250 (296)
T 3e5z_A          192 DNATHRYCLNARGETEYQGV-HF-TVEPGKTDGLRVDAGGLIWASA-------------------GDGVHVLTPDGDELG  250 (296)
T ss_dssp             TTEEEEEEECSSSCEEEEEE-EE-CCSSSCCCSEEEBTTSCEEEEE-------------------TTEEEEECTTSCEEE
T ss_pred             CCeEEEEEECCCCcCcCCCe-Ee-eCCCCCCCeEEECCCCCEEEEc-------------------CCeEEEECCCCCEEE
Confidence             5688888 4 55 4 2111 11 1123568899999999999995                   248999999844444


Q ss_pred             EeeccccccceEEE-cCCCCEEEEEEcCCCeEEEEEeecCCCcc
Q 026118          146 LVLDGLYFANGVAL-SEDERFLVVCESWKFRCVKHFLKVSGRTD  188 (243)
Q Consensus       146 ~~~~~~~~~~gi~~-~~dg~~l~v~~~~~~~i~~~~~~~~~~~~  188 (243)
                      .+..... +..++| +++++.||++..  +.|+++++....+.+
T Consensus       251 ~~~~~~~-~~~~~f~~~d~~~L~v~t~--~~l~~~~~~~~~~~~  291 (296)
T 3e5z_A          251 RVLTPQT-TSNLCFGGPEGRTLYMTVS--TEFWSIETNVRGLEH  291 (296)
T ss_dssp             EEECSSC-CCEEEEESTTSCEEEEEET--TEEEEEECSCCBCCC
T ss_pred             EEECCCC-ceeEEEECCCCCEEEEEcC--CeEEEEEcccccccc
Confidence            4443334 888999 589999999964  689999987655443

>3dsm_A Uncharacterized protein bacuni_02894; seven_blated beta propeller, structural genomics, PSI-2, Pro structure initiative; 1.90A {Bacteroides uniformis}

Probab=99.63  E-value=6.8e-14  Score=113.82  Aligned_cols=182  Identities=9%  Similarity=0.001  Sum_probs=125.6

Q ss_pred             CcccEEEcCCCcEEEEe-CCCcEEEEcc-CCceeEecccCCccccceEEccCCCEEEEEe-CCCcEEEEe-cCC-cE-EE
Q 026118           11 HPEDVSVDGNGVLYTAT-GDGWIKRMHP-NGTWEDWHQVGSQSLLGLTTTKENNVIIVCD-SQQGLLKVS-EEG-VT-VL   84 (243)
Q Consensus        11 ~p~~i~~d~~g~l~~~~-~~~~i~~~~~-~g~~~~~~~~~~~~~~~i~~~~~g~l~~v~~-~~~gl~~~~-~~g-~~-~~   84 (243)
                      .|++|+++ ++.+|++. .++.|..+|+ +++..........|. +++++++|++ |+++ ....|.++| .++ .. .+
T Consensus        45 ~~~~i~~~-~~~lyv~~~~~~~v~viD~~t~~~~~~i~~~~~p~-~i~~~~~g~l-yv~~~~~~~v~~iD~~t~~~~~~i  121 (328)
T 3dsm_A           45 VAQSMVIR-DGIGWIVVNNSHVIFAIDINTFKEVGRITGFTSPR-YIHFLSDEKA-YVTQIWDYRIFIINPKTYEITGYI  121 (328)
T ss_dssp             CEEEEEEE-TTEEEEEEGGGTEEEEEETTTCCEEEEEECCSSEE-EEEEEETTEE-EEEEBSCSEEEEEETTTTEEEEEE
T ss_pred             cceEEEEE-CCEEEEEEcCCCEEEEEECcccEEEEEcCCCCCCc-EEEEeCCCeE-EEEECCCCeEEEEECCCCeEEEEE
Confidence            57889886 46899888 4678999994 566533223346678 9999888877 9998 567799999 566 33 22


Q ss_pred             EeccCCCcccCCccEEEcCCCcEEEEeCCCCCCcccccccccccCCCceEEEEeCCCCeeEEeeccccccceEEEcCCCC
Q 026118           85 VSQFNGSQLRFANDVIEASDGSLYFTVSSTKFTPAEYYLDLVSGEPHGVLLKYDPSTNQTSLVLDGLYFANGVALSEDER  164 (243)
Q Consensus        85 ~~~~~~~~~~~~~~l~~d~~G~l~v~~~~~~~~~~~~~~~~~~~~~~g~v~~~~~~~~~~~~~~~~~~~~~gi~~~~dg~  164 (243)
                      ...........|.+|++ .++++|+++.+                ..+.|+++|++++++.........|++++++++|+
T Consensus       122 ~~g~~~~~~~~p~~i~~-~~~~lyv~~~~----------------~~~~v~viD~~t~~~~~~i~~g~~p~~i~~~~dG~  184 (328)
T 3dsm_A          122 ECPDMDMESGSTEQMVQ-YGKYVYVNCWS----------------YQNRILKIDTETDKVVDELTIGIQPTSLVMDKYNK  184 (328)
T ss_dssp             ECTTCCTTTCBCCCEEE-ETTEEEEEECT----------------TCCEEEEEETTTTEEEEEEECSSCBCCCEECTTSE
T ss_pred             EcCCccccCCCcceEEE-ECCEEEEEcCC----------------CCCEEEEEECCCCeEEEEEEcCCCccceEEcCCCC
Confidence            21111111236788888 57889999642                13589999999888765544456789999999998


Q ss_pred             EEEEEEcCC----------CeEEEEEeecCCCcceEEeccCCCCCCCceEECCCCC-EEEEE
Q 026118          165 FLVVCESWK----------FRCVKHFLKVSGRTDREIFIDNLPGGPDNVNLARDGS-FWISI  215 (243)
Q Consensus       165 ~l~v~~~~~----------~~i~~~~~~~~~~~~~~~~~~~~~~~~~~i~~d~~G~-lwv~~  215 (243)
                       +|++....          +.|+++|..+..+.  ..+.-.....|.+|+++++|+ ||+++
T Consensus       185 -l~v~~~~~~~~~~~~~~~~~v~~id~~t~~v~--~~~~~~~g~~p~~la~~~d~~~lyv~~  243 (328)
T 3dsm_A          185 -MWTITDGGYEGSPYGYEAPSLYRIDAETFTVE--KQFKFKLGDWPSEVQLNGTRDTLYWIN  243 (328)
T ss_dssp             -EEEEBCCBCTTCSSCBCCCEEEEEETTTTEEE--EEEECCTTCCCEEEEECTTSCEEEEES
T ss_pred             -EEEEECCCccCCccccCCceEEEEECCCCeEE--EEEecCCCCCceeEEEecCCCEEEEEc
Confidence             88887654          78999997653221  122111123689999998776 78864

>3hfq_A Uncharacterized protein LP_2219; Q88V64_lacpl, NESG, LPR118, structural genomics, PSI-2, protein structure initiative; 1.96A {Lactobacillus plantarum}

Probab=99.63  E-value=1.8e-13  Score=111.56  Aligned_cols=192  Identities=14%  Similarity=0.167  Sum_probs=125.1

Q ss_pred             cCCcccEEEcCCCcEEEEeC---CCcEEEEc-cCCceeEec---ccCCccccceEEccCCCEEEEEeCCCc-EEEEe--c
Q 026118            9 VNHPEDVSVDGNGVLYTATG---DGWIKRMH-PNGTWEDWH---QVGSQSLLGLTTTKENNVIIVCDSQQG-LLKVS--E   78 (243)
Q Consensus         9 ~~~p~~i~~d~~g~l~~~~~---~~~i~~~~-~~g~~~~~~---~~~~~~~~~i~~~~~g~l~~v~~~~~g-l~~~~--~   78 (243)
                      ...|.+++++++|+||++..   ++.|+.++ .+++.+...   .....|. +++++++|++||++....+ +..++  .
T Consensus        39 ~~~p~~~a~spdg~l~~~~~~~~~~~v~~~~~~~g~~~~~~~~~~~~~~p~-~~a~spdg~~l~~~~~~~~~v~v~~~~~  117 (347)
T 3hfq_A           39 TQNPTYLALSAKDCLYSVDKEDDEGGIAAWQIDGQTAHKLNTVVAPGTPPA-YVAVDEARQLVYSANYHKGTAEVMKIAA  117 (347)
T ss_dssp             CSCCCCEEECTTCEEEEEEEETTEEEEEEEEEETTEEEEEEEEEEESCCCS-EEEEETTTTEEEEEETTTTEEEEEEECT
T ss_pred             cCCcceEEEccCCeEEEEEecCCCceEEEEEecCCcEEEeeeeecCCCCCE-EEEECCCCCEEEEEeCCCCEEEEEEeCC
Confidence            46899999999999998764   47888888 455543332   2345677 8999999997688885444 66666  3


Q ss_pred             CC-cEEEEecc-CCC------cccCCccEEEcCCCcEEEEeCCCCCCcccccccccccCCCceEEEEeCC-CCeeEEee-
Q 026118           79 EG-VTVLVSQF-NGS------QLRFANDVIEASDGSLYFTVSSTKFTPAEYYLDLVSGEPHGVLLKYDPS-TNQTSLVL-  148 (243)
Q Consensus        79 ~g-~~~~~~~~-~~~------~~~~~~~l~~d~~G~l~v~~~~~~~~~~~~~~~~~~~~~~g~v~~~~~~-~~~~~~~~-  148 (243)
                      +| ...+.... .+.      ....+.+++++|+|++|+++..                 .+.|+.++.+ ++++.... 
T Consensus       118 ~g~~~~~~~~~~~~~~p~~~~~~~~~~~~~~spdg~l~v~~~~-----------------~~~v~~~~~~~~g~~~~~~~  180 (347)
T 3hfq_A          118 DGALTLTDTVQHSGHGPRPEQDGSHIHYTDLTPDNRLAVIDLG-----------------SDKVYVYNVSDAGQLSEQSV  180 (347)
T ss_dssp             TSCEEEEEEEECCCCCSSTTCSSCCEEEEEECTTSCEEEEETT-----------------TTEEEEEEECTTSCEEEEEE
T ss_pred             CCCeeecceeecCCCCCCccccCCCceEEEECCCCcEEEEeCC-----------------CCEEEEEEECCCCcEEEeee
Confidence            45 44333211 111      1224667999999998888643                 2356666655 46554332 


Q ss_pred             ---ccccccceEEEcCCCCEEEEEEcCCCeEEEEEeec--CCCcceEEeccCCC-----CCCCceEECCCCC-EEEEEec
Q 026118          149 ---DGLYFANGVALSEDERFLVVCESWKFRCVKHFLKV--SGRTDREIFIDNLP-----GGPDNVNLARDGS-FWISIIK  217 (243)
Q Consensus       149 ---~~~~~~~gi~~~~dg~~l~v~~~~~~~i~~~~~~~--~~~~~~~~~~~~~~-----~~~~~i~~d~~G~-lwv~~~~  217 (243)
                         .....|..++|+|||++||++...++.|..|+.+.  +.+.....+.....     ..|.+++++++|+ ||++...
T Consensus       181 ~~~~~g~~p~~~~~spdg~~l~v~~~~~~~v~v~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~i~~spdG~~l~v~~~~  260 (347)
T 3hfq_A          181 LTMEAGFGPRHLVFSPDGQYAFLAGELSSQIASLKYDTQTGAFTQLGIVKTIPADYTAHNGAAAIRLSHDGHFLYVSNRG  260 (347)
T ss_dssp             EECCTTCCEEEEEECTTSSEEEEEETTTTEEEEEEEETTTTEEEEEEEEESSCTTCCSCCEEEEEEECTTSCEEEEEEET
T ss_pred             EEcCCCCCCceEEECCCCCEEEEEeCCCCEEEEEEecCCCCceEEeeeeeecCCCCCCCCcceeEEECCCCCEEEEEeCC
Confidence               12336788999999999999988888999998874  22222222211111     2366799999998 7887654


Q ss_pred             C
Q 026118          218 M  218 (243)
Q Consensus       218 ~  218 (243)
                      .
T Consensus       261 ~  261 (347)
T 3hfq_A          261 Y  261 (347)
T ss_dssp             T
T ss_pred             C
Confidence            3

>1n7d_A LDL receptor, low-density lipoprotein receptor; familial hypercholesterolemia, cholestero metabolism, lipid transport; HET: NAG BMA MAN KEG; 3.70A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1 g.3.11.1 g.3.11.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 PDB: 2lgp_A 1xfe_A 1f5y_A 1ldl_A 1ldr_A 1d2j_A 1f8z_A

Probab=99.62  E-value=6.9e-15  Score=131.02  Aligned_cols=185  Identities=12%  Similarity=0.108  Sum_probs=129.0

Q ss_pred             cCCcccEEEcC-CCcEEEEe-CCCcEEEEccCC-----ceeEec-ccCCccccceEEcc-CCCEEEEEeCC-CcEEEEec
Q 026118            9 VNHPEDVSVDG-NGVLYTAT-GDGWIKRMHPNG-----TWEDWH-QVGSQSLLGLTTTK-ENNVIIVCDSQ-QGLLKVSE   78 (243)
Q Consensus         9 ~~~p~~i~~d~-~g~l~~~~-~~~~i~~~~~~g-----~~~~~~-~~~~~~~~~i~~~~-~g~l~~v~~~~-~gl~~~~~   78 (243)
                      +..|.+|++|+ ++.||+++ ..+.|++++.++     ....+. .....|. +|+++. .+++ |+++.. +.|.+++.
T Consensus       405 ~~~p~gla~d~~~~~Ly~sD~~~~~I~~~~~~g~~~~~~~~~~i~~~~~~P~-glavD~~~g~L-Y~tD~~~~~I~v~d~  482 (699)
T 1n7d_A          405 LRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRDIQAPD-GLAVDWIHSNI-YWTDSVLGTVSVADT  482 (699)
T ss_dssp             CTTCCCCEEETTTTEEEECCTTTTSBEEEESCCCCC-CCCCCBCCSCC--CC-CEECCCSSSBC-EECCTTTSCEEEEBS
T ss_pred             CcceEEEccccccCeEEEEecCCCeEEEEecCCCCCCcceEEEEeCCCCCcc-eEEEEeeCCcE-EEEeccCCeEEEEec
Confidence            56899999996 67899998 667899998654     222222 1224577 999994 5666 888754 46888885


Q ss_pred             CC-c-EEEEeccCCCcccCCccEEEcC-CCcEEEEeCCCCCCcccccccccccCCCceEEEEeCCCCeeEEe-ecccccc
Q 026118           79 EG-V-TVLVSQFNGSQLRFANDVIEAS-DGSLYFTVSSTKFTPAEYYLDLVSGEPHGVLLKYDPSTNQTSLV-LDGLYFA  154 (243)
Q Consensus        79 ~g-~-~~~~~~~~~~~~~~~~~l~~d~-~G~l~v~~~~~~~~~~~~~~~~~~~~~~g~v~~~~~~~~~~~~~-~~~~~~~  154 (243)
                      ++ . +.+..    .....|++|++|+ .|.||+++.+                ..+.|+++++++...+.+ ...+..|
T Consensus       483 dg~~~~~l~~----~~~~~P~giavDp~~g~ly~td~~----------------~~~~I~~~~~dG~~~~~l~~~~l~~P  542 (699)
T 1n7d_A          483 KGVKRKTLFR----EQGSKPRAIVVDPVHGFMYWTDWG----------------TPAKIKKGGLNGVDIYSLVTENIQWP  542 (699)
T ss_dssp             SSCCEEEECC----CSSCCCCCEECCSSSSCCEECCCS----------------SSCCEEBCCSSSCCCCEESCSSCSSC
T ss_pred             CCCceEEEEe----CCCCCcceEEEccCCCcEEEcccC----------------CCCeEEEEeCCCCCeeEEEeCCCCCc
Confidence            55 3 33322    1235688999998 5789998643                125799999884443333 2457789


Q ss_pred             ceEEEcCCCCEEEEEEcCCCeEEEEEeecCCCcceEEecc--CCCCCCCceEECCCCCEEEEEecCC
Q 026118          155 NGVALSEDERFLVVCESWKFRCVKHFLKVSGRTDREIFID--NLPGGPDNVNLARDGSFWISIIKMD  219 (243)
Q Consensus       155 ~gi~~~~dg~~l~v~~~~~~~i~~~~~~~~~~~~~~~~~~--~~~~~~~~i~~d~~G~lwv~~~~~~  219 (243)
                      +||+++++++.|||++...+.|.++++++.   ..+.+..  .....|.+|++|.+ +||++.+..+
T Consensus       543 nGlavd~~~~~LY~aD~~~~~I~~~d~dG~---~~~~~~~~~~~~~~P~glavd~~-~lywtd~~~~  605 (699)
T 1n7d_A          543 NGITLDLLSGRLYWVDSKLHSISSIDVNGG---NRKTILEDEKRLAHPFSLAVFED-KVFWTDIINE  605 (699)
T ss_dssp             CCEEECTTTCCEEEEETTTTEEEEECSSSS---CCEEECCCSSSCSSCCCCEEETT-EEEEECSTTT
T ss_pred             cEEEEeccCCEEEEEecCCCeEEEEccCCC---ceEEEEecCCcCCCceEeEEECC-EEEEEeCCCC
Confidence            999999987779999999999999998762   2333332  22357999999876 6888776543

>2qe8_A Uncharacterized protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE UNL PG4; 1.35A {Anabaena variabilis atcc 29413}

Probab=99.62  E-value=3.7e-14  Score=116.07  Aligned_cols=190  Identities=13%  Similarity=0.176  Sum_probs=126.4

Q ss_pred             cccCCcccEEEcCCCcEEEEeC------CCcEEEEcc-CCce-eEeccc------CCccccceEEccCCCEEEEEeC---
Q 026118            7 GIVNHPEDVSVDGNGVLYTATG------DGWIKRMHP-NGTW-EDWHQV------GSQSLLGLTTTKENNVIIVCDS---   69 (243)
Q Consensus         7 g~~~~p~~i~~d~~g~l~~~~~------~~~i~~~~~-~g~~-~~~~~~------~~~~~~~i~~~~~g~l~~v~~~---   69 (243)
                      +.+..|.+|++|++|+||+.+.      ..+|+++|. ++++ ..+...      ...+. ++++++++..+|+++.   
T Consensus        64 ~~~~~p~gv~~d~~g~L~v~D~g~~~~~~~~i~~~d~~tg~~~~~~~~~~~~~~~~~~~~-~v~vd~~~g~~yvtd~~~~  142 (343)
T 2qe8_A           64 ITFDTVLGIKSDGNGIVWMLDNGNQSKSVPKLVAWDTLNNQLSRVIYLPPPITLSNSFVN-DLAVDLIHNFVYISDPAPD  142 (343)
T ss_dssp             CCCSCEEEEEECSSSEEEEEECHHHHTSCCEEEEEETTTTEEEEEEECCTTTSCTTCCCC-EEEEETTTTEEEEEECCSG
T ss_pred             cceeEeeEEEEcCCCcEEEEcCCCCcCCCCeEEEEECCCCeEEEEEECChhhcccccccc-eEEEecCCCEEEEEcCccC
Confidence            3467899999999999999873      478999994 5763 333321      12346 8999976444499985   


Q ss_pred             -CCcEEEEe-cCC-cEEEEec------------cCCCc-------------ccCCccEEEcCCCc-EEEEeCCCCCCccc
Q 026118           70 -QQGLLKVS-EEG-VTVLVSQ------------FNGSQ-------------LRFANDVIEASDGS-LYFTVSSTKFTPAE  120 (243)
Q Consensus        70 -~~gl~~~~-~~g-~~~~~~~------------~~~~~-------------~~~~~~l~~d~~G~-l~v~~~~~~~~~~~  120 (243)
                       ..+|++++ .++ ...+...            ..+..             ...+++|+++++|+ +|+++..       
T Consensus       143 ~~~~i~v~d~~~g~~~r~~~~~~~~~~~~~~~~~~g~~~~~~~~~g~~~~~~~~~~gia~s~dg~~ly~~~~~-------  215 (343)
T 2qe8_A          143 DKAALIRVDLQTGLAARVLQGYPGIAPEDIDLVIDGVPVQIGQPDGTVIRPHLGVNGIVLDAENEWLYLSPMH-------  215 (343)
T ss_dssp             GGCEEEEEETTTCCEEEECTTCTTTSCCSCCCEETTEECBEECTTSCEECCCCCEEEEEECTTSCEEEEEESS-------
T ss_pred             CCCeEEEEECCCCCEEEEecCCCcccccccceeECCEEEEeccCCCceeceecccceeEeccCCCEEEEEeCC-------
Confidence             35688898 556 3332211            00100             12468999999995 8888643       


Q ss_pred             ccccccccCCCceEEEEeCCC---CeeE--------EeeccccccceEEEcCCCCEEEEEEcCCCeEEEEEeecCCCcce
Q 026118          121 YYLDLVSGEPHGVLLKYDPST---NQTS--------LVLDGLYFANGVALSEDERFLVVCESWKFRCVKHFLKVSGRTDR  189 (243)
Q Consensus       121 ~~~~~~~~~~~g~v~~~~~~~---~~~~--------~~~~~~~~~~gi~~~~dg~~l~v~~~~~~~i~~~~~~~~~~~~~  189 (243)
                                ...||+++.+.   +.+.        ........|.||++|++|+ ||+++..++.|.+|+...+   +.
T Consensus       216 ----------~~~l~~~~~~~~~~~~~~~~~~~~~~~~~g~~g~pdgia~d~~G~-l~va~~~~~~V~~~d~~~G---~~  281 (343)
T 2qe8_A          216 ----------STSMYRIKSADLSNLQLTDAELGSKIERYSEKPICDGISIDKDHN-IYVGDLAHSAIGVITSADR---AY  281 (343)
T ss_dssp             ----------CSEEEEEEHHHHTCTTCCHHHHHTTCEEEEECCSCSCEEECTTCC-EEEEEGGGTEEEEEETTTT---EE
T ss_pred             ----------CCeEEEEEHHHhcCCCCChhhhhcceEecccCCCCceEEECCCCC-EEEEccCCCeEEEEECCCC---CE
Confidence                      23789987421   1100        1112234789999999998 9999999999999997222   23


Q ss_pred             EEeccC-CCCCCCceEECCCCCEEEEEecC
Q 026118          190 EIFIDN-LPGGPDNVNLARDGSFWISIIKM  218 (243)
Q Consensus       190 ~~~~~~-~~~~~~~i~~d~~G~lwv~~~~~  218 (243)
                      ..+... ....|.+++++++|+|||.+...
T Consensus       282 ~~~~~~~~~~~p~~va~~~~g~l~v~~~~~  311 (343)
T 2qe8_A          282 KLLVTDEKLSWTDSFNFGSDGYLYFDCNQL  311 (343)
T ss_dssp             EEEEECGGGSCEEEEEECTTSCEEEEECCG
T ss_pred             EEEEECCceecCCeeEECCCCcEEEEeCcc
Confidence            333222 13469999999999999998765

>4a2l_A BT_4663, two-component system sensor histidine kinase/RESP; transcription, beta-propeller; HET: PGE PG4 MES 2PE; 2.60A {Bacteroides thetaiotaomicron} PDB: 4a2m_A*

Probab=99.61  E-value=2.8e-14  Score=129.06  Aligned_cols=178  Identities=15%  Similarity=0.147  Sum_probs=124.3

Q ss_pred             CcccEEEcCCCc-EEEEeCCCcEEEEcc-CCceeEeccc-----CCccccceEEccCCCEEEEEeCCCcEEEEe-cCC-c
Q 026118           11 HPEDVSVDGNGV-LYTATGDGWIKRMHP-NGTWEDWHQV-----GSQSLLGLTTTKENNVIIVCDSQQGLLKVS-EEG-V   81 (243)
Q Consensus        11 ~p~~i~~d~~g~-l~~~~~~~~i~~~~~-~g~~~~~~~~-----~~~~~~~i~~~~~g~l~~v~~~~~gl~~~~-~~g-~   81 (243)
                      ...+|+.|++|+ ||+++.+++|+++++ .+++..+...     ..... +|..|++|++ |+++. .||++++ .++ +
T Consensus       407 ~v~~i~~d~~g~~lWigt~~~Gl~~~d~~~~~~~~~~~~~~~l~~~~v~-~i~~d~~g~l-wigt~-~Gl~~~~~~~~~~  483 (795)
T 4a2l_A          407 NIKAVYVDEKKSLVYIGTHAGGLSILHRNSGQVENFNQRNSQLVNENVY-AILPDGEGNL-WLGTL-SALVRFNPEQRSF  483 (795)
T ss_dssp             CEEEEEEETTTTEEEEEETTTEEEEEETTTCCEEEECTTTSCCSCSCEE-EEEECSSSCE-EEEES-SCEEEEETTTTEE
T ss_pred             cEEEEEEcCCCCEEEEEeCcCceeEEeCCCCcEEEeecCCCCcCCCeeE-EEEECCCCCE-EEEec-CceeEEeCCCCeE
Confidence            345788999999 999998889999994 5666665431     12334 7888999999 99997 8999999 556 5


Q ss_pred             EEEEec--cCCCcccCCccEEEcCCCcEEEEeCCCCCCcccccccccccCCCceEEEEeCCCCeeEEeec---c----cc
Q 026118           82 TVLVSQ--FNGSQLRFANDVIEASDGSLYFTVSSTKFTPAEYYLDLVSGEPHGVLLKYDPSTNQTSLVLD---G----LY  152 (243)
Q Consensus        82 ~~~~~~--~~~~~~~~~~~l~~d~~G~l~v~~~~~~~~~~~~~~~~~~~~~~g~v~~~~~~~~~~~~~~~---~----~~  152 (243)
                      +.+...  ........+.++++|++|++|+++.                   ++|+++++++++. .+..   .    ..
T Consensus       484 ~~~~~~~~~~~~~~~~i~~i~~d~~g~lWigt~-------------------~Gl~~~~~~~~~~-~~~~~~~~~~l~~~  543 (795)
T 4a2l_A          484 TTIEKEKDGTPVVSKQITTLFRDSHKRLWIGGE-------------------EGLSVFKQEGLDI-QKASILPVSNVTKL  543 (795)
T ss_dssp             EECCBCTTCCBCCCCCEEEEEECTTCCEEEEES-------------------SCEEEEEEETTEE-EECCCSCSCGGGGS
T ss_pred             EEccccccccccCCceEEEEEECCCCCEEEEeC-------------------CceEEEeCCCCeE-EEecCCCCCCCCCC
Confidence            443321  0111224567889999999999953                   3799999987766 4321   1    12


Q ss_pred             ccceEEEcCCCCEEEEEEcCCCeEEEEEeecCCCcceEEeccCCCCCCC----ceEECCCCCEEEEEecC
Q 026118          153 FANGVALSEDERFLVVCESWKFRCVKHFLKVSGRTDREIFIDNLPGGPD----NVNLARDGSFWISIIKM  218 (243)
Q Consensus       153 ~~~gi~~~~dg~~l~v~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~----~i~~d~~G~lwv~~~~~  218 (243)
                      ...+|..+++|+ ||++..  +.|++|+....   ..+.+. ...++|+    +|+.|++|+||+++..+
T Consensus       544 ~i~~i~~d~~g~-lWigT~--~Gl~~~d~~~~---~~~~~~-~~~gl~~~~i~~i~~d~~g~lWi~t~~G  606 (795)
T 4a2l_A          544 FTNCIYEASNGI-IWVGTR--EGFYCFNEKDK---QIKRYN-TTNGLPNNVVYGILEDSFGRLWLSTNRG  606 (795)
T ss_dssp             CEEEEEECTTSC-EEEEES--SCEEEEETTTT---EEEEEC-GGGTCSCSCEEEEEECTTSCEEEEETTE
T ss_pred             eeEEEEECCCCC-EEEEeC--CCceeECCCCC---cEEEeC-CCCCCchhheEEEEECCCCCEEEEcCCc
Confidence            346788899998 999975  37999987543   233332 2233443    48889999999999644

>2dg1_A DRP35, lactonase; beta propeller, hydrolase; 1.72A {Staphylococcus aureus} SCOP: b.68.6.1 PDB: 2dg0_A 2dso_A

Probab=99.61  E-value=9.6e-14  Score=112.55  Aligned_cols=181  Identities=14%  Similarity=0.131  Sum_probs=122.9

Q ss_pred             CCcccEEEcCCCcEEEEeCC-----CcEEEEccC-CceeEecc---cCCccccceEEccCCCEEEEEeCC-------CcE
Q 026118           10 NHPEDVSVDGNGVLYTATGD-----GWIKRMHPN-GTWEDWHQ---VGSQSLLGLTTTKENNVIIVCDSQ-------QGL   73 (243)
Q Consensus        10 ~~p~~i~~d~~g~l~~~~~~-----~~i~~~~~~-g~~~~~~~---~~~~~~~~i~~~~~g~l~~v~~~~-------~gl   73 (243)
                      ..|.+|+++++|+||++...     ++|++++.+ ++...+..   ....+. +++++++|++ |+++..       .+|
T Consensus        87 ~~~~~i~~~~dg~l~v~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~-~i~~d~~g~l-~v~~~~~~~~~~~~~l  164 (333)
T 2dg1_A           87 ANPAAIKIHKDGRLFVCYLGDFKSTGGIFAATENGDNLQDIIEDLSTAYCID-DMVFDSKGGF-YFTDFRGYSTNPLGGV  164 (333)
T ss_dssp             SSEEEEEECTTSCEEEEECTTSSSCCEEEEECTTSCSCEEEECSSSSCCCEE-EEEECTTSCE-EEEECCCBTTBCCEEE
T ss_pred             CCcceEEECCCCcEEEEeCCCCCCCceEEEEeCCCCEEEEEEccCccCCccc-ceEECCCCCE-EEEeccccccCCCceE
Confidence            46889999999999999843     489999954 44432221   123456 8999999998 888753       468


Q ss_pred             EEEe-cCC-cEEEEeccCCCcccCCccEEEcCCCc-EEEEeCCCCCCcccccccccccCCCceEEEEeCCC-C-eeEEe-
Q 026118           74 LKVS-EEG-VTVLVSQFNGSQLRFANDVIEASDGS-LYFTVSSTKFTPAEYYLDLVSGEPHGVLLKYDPST-N-QTSLV-  147 (243)
Q Consensus        74 ~~~~-~~g-~~~~~~~~~~~~~~~~~~l~~d~~G~-l~v~~~~~~~~~~~~~~~~~~~~~~g~v~~~~~~~-~-~~~~~-  147 (243)
                      ++++ .++ ...+...     ...+++++++++|+ +|+++..                 .+.|++++.++ + .+..+ 
T Consensus       165 ~~~~~~~~~~~~~~~~-----~~~~~~i~~~~dg~~l~v~~~~-----------------~~~i~~~d~~~~g~~~~~~~  222 (333)
T 2dg1_A          165 YYVSPDFRTVTPIIQN-----ISVANGIALSTDEKVLWVTETT-----------------ANRLHRIALEDDGVTIQPFG  222 (333)
T ss_dssp             EEECTTSCCEEEEEEE-----ESSEEEEEECTTSSEEEEEEGG-----------------GTEEEEEEECTTSSSEEEEE
T ss_pred             EEEeCCCCEEEEeecC-----CCcccceEECCCCCEEEEEeCC-----------------CCeEEEEEecCCCcCccccc
Confidence            9998 444 4443321     23567899999996 8888532                 34788888742 2 23211 


Q ss_pred             ---e---ccccccceEEEcCCCCEEEEEEcCCCeEEEEEeecCCCcceEEeccCCC--C---CCCceEECCCC-CEEEEE
Q 026118          148 ---L---DGLYFANGVALSEDERFLVVCESWKFRCVKHFLKVSGRTDREIFIDNLP--G---GPDNVNLARDG-SFWISI  215 (243)
Q Consensus       148 ---~---~~~~~~~gi~~~~dg~~l~v~~~~~~~i~~~~~~~~~~~~~~~~~~~~~--~---~~~~i~~d~~G-~lwv~~  215 (243)
                         .   .....|.+|+++++|+ +|++...++.|.+|++++.   ....+.....  +   .|.+++++++| +||+++
T Consensus       223 ~~~~~~~~~~~~~~~i~~d~~G~-l~v~~~~~~~v~~~d~~g~---~~~~~~~~~~~~g~~~~~~~~~~~~dg~~L~v~~  298 (333)
T 2dg1_A          223 ATIPYYFTGHEGPDSCCIDSDDN-LYVAMYGQGRVLVFNKRGY---PIGQILIPGRDEGHMLRSTHPQFIPGTNQLIICS  298 (333)
T ss_dssp             EEEEEECCSSSEEEEEEEBTTCC-EEEEEETTTEEEEECTTSC---EEEEEECTTGGGTCSCBCCEEEECTTSCEEEEEE
T ss_pred             ceEEEecCCCCCCCceEECCCCC-EEEEEcCCCEEEEECCCCC---EEEEEEcCCCccccccCcceEEECCCCCEEEEEe
Confidence               1   1124688999999998 9999877789999987532   2222321111  1   58899999886 699998


Q ss_pred             ecC
Q 026118          216 IKM  218 (243)
Q Consensus       216 ~~~  218 (243)
                      ..+
T Consensus       299 ~~g  301 (333)
T 2dg1_A          299 NDI  301 (333)
T ss_dssp             ECG
T ss_pred             Ccc
Confidence            764

>3tc9_A Hypothetical hydrolase; 6-bladed beta-propeller, immunoglobulin-like, structural GEN joint center for structural genomics, JCSG; 2.23A {Bacteroides thetaiotaomicron}

Probab=99.61  E-value=2.8e-14  Score=120.33  Aligned_cols=185  Identities=9%  Similarity=0.069  Sum_probs=123.1

Q ss_pred             ccCCcccEEEcCCCc-EEEEeCC-----CcEEEEccCCcee--EecccCCccccceEEcc-CCCEEEEEeCC-CcEEEEe
Q 026118            8 IVNHPEDVSVDGNGV-LYTATGD-----GWIKRMHPNGTWE--DWHQVGSQSLLGLTTTK-ENNVIIVCDSQ-QGLLKVS   77 (243)
Q Consensus         8 ~~~~p~~i~~d~~g~-l~~~~~~-----~~i~~~~~~g~~~--~~~~~~~~~~~~i~~~~-~g~l~~v~~~~-~gl~~~~   77 (243)
                      .+..|.+|++|++|. ||+++..     ..++.+++++.+.  ........|. ++++++ +|++ |+++.. +.|++++
T Consensus       177 ~~~~P~~ia~d~~G~~lyvad~~~~~~~~~v~~~~~~g~~~~~~~l~~~~~p~-giavdp~~g~l-yv~d~~~~~V~~~~  254 (430)
T 3tc9_A          177 GLSKVRTICWTHEADSMIITNDQNNNDRPNNYILTRESGFKVITELTKGQNCN-GAETHPINGEL-YFNSWNAGQVFRYD  254 (430)
T ss_dssp             CCSCEEEEEECTTSSEEEEEECCSCTTSEEEEEEEGGGTSCSEEEEEECSSCC-CEEECTTTCCE-EEEETTTTEEEEEE
T ss_pred             CCCCcceEEEeCCCCEEEEEeCCCCcccceEEEEeCCCceeeeeeeccCCCce-EEEEeCCCCEE-EEEECCCCEEEEEE
Confidence            367899999999987 9999842     2466677665443  1111235678 999999 7888 999865 4589999


Q ss_pred             cC-C-cEEEEeccCCCcccCCccEEEcCCCc-EEEEeCCCCCCcccccccccccCCCceEEEEeCCC--Cee---EEeec
Q 026118           78 EE-G-VTVLVSQFNGSQLRFANDVIEASDGS-LYFTVSSTKFTPAEYYLDLVSGEPHGVLLKYDPST--NQT---SLVLD  149 (243)
Q Consensus        78 ~~-g-~~~~~~~~~~~~~~~~~~l~~d~~G~-l~v~~~~~~~~~~~~~~~~~~~~~~g~v~~~~~~~--~~~---~~~~~  149 (243)
                      .+ + ...+....   ....|++|+++++|+ +|+++..                 ...|++++.+.  +++   ..+..
T Consensus       255 ~~~~~~~~~~~~~---~~~~P~gia~~pdG~~lyv~d~~-----------------~~~I~~~~~d~~~~~~~~~~~~ag  314 (430)
T 3tc9_A          255 FTTQETTPLFTIQ---DSGWEFHIQFHPSGNYAYIVVVN-----------------QHYILRSDYDWKTKRLTTPYIVCG  314 (430)
T ss_dssp             TTTTEEEEEEECS---SSSCCEEEEECTTSSEEEEEETT-----------------TTEEEEEEEETTTTEECCCEEEEE
T ss_pred             CCCCcEEEEEEcC---CCCcceeEEEcCCCCEEEEEECC-----------------CCEEEEEeCCcccccccceEEEec
Confidence            44 4 32333211   124688999999998 9999754                 34788876652  222   12221


Q ss_pred             ---------------cccccc-eEEEc--------CCCCEEEEEEcCCCeEEEEEeecCCCcceEEeccC----------
Q 026118          150 ---------------GLYFAN-GVALS--------EDERFLVVCESWKFRCVKHFLKVSGRTDREIFIDN----------  195 (243)
Q Consensus       150 ---------------~~~~~~-gi~~~--------~dg~~l~v~~~~~~~i~~~~~~~~~~~~~~~~~~~----------  195 (243)
                                     .+..|. +++++        ++|+ |||++..+++|.+++.++    ....+...          
T Consensus       315 ~~g~~g~~dg~~~~a~~~~P~~gv~v~~~~y~~~D~~g~-lyvaD~~n~~I~~i~~~G----~v~~~~g~g~~~~~G~~d  389 (430)
T 3tc9_A          315 QQGAKDWVDGVGKKARMHAPRQGTFVKNPAYKGSSDEYD-FYFCDRENHCIRILTPQG----RVTTFAGRGSNGTSGYND  389 (430)
T ss_dssp             CTTCBCCBCEEGGGCBBSSEEEEEEEECGGGTTSSCCEE-EEEEEGGGTEEEEECTTS----EEEEEEECCTTSSSSCBC
T ss_pred             cCCCCCCCCCCCcceEeCCCcceEEEccccccccCCCCe-EEEEECCCcEEEEECCCC----cEEEEEeCCCCCCCcccC
Confidence                           134577 78874        4566 999999999999998543    12222110          


Q ss_pred             -------CCCCCCceEECC-CCCEEEEEecCC
Q 026118          196 -------LPGGPDNVNLAR-DGSFWISIIKMD  219 (243)
Q Consensus       196 -------~~~~~~~i~~d~-~G~lwv~~~~~~  219 (243)
                             ....|.+|++|+ +|+|||++..++
T Consensus       390 G~~~~~~~~~~P~giavd~~~g~lyVaD~~n~  421 (430)
T 3tc9_A          390 GDLRQEARFNHPEGIVYDEERECFFIGDRENR  421 (430)
T ss_dssp             EETTTTCBCSSEEEEEEETTTTEEEEEEGGGT
T ss_pred             CCchhhcEeCCCcEEEEECCCCEEEEEECCCC
Confidence                   112699999998 689999987653

>3v64_C Agrin; beta propeller, laminin-G, signaling, protein binding; HET: NAG; 2.85A {Rattus norvegicus}

Probab=99.61  E-value=2.2e-13  Score=111.77  Aligned_cols=179  Identities=16%  Similarity=0.143  Sum_probs=124.1

Q ss_pred             EEEcCCCcEEEEeCCCcEEEEccCCc-eeEecccCCccccceEEccCCCEEEEEeCC-CcEEEEecCC--cEEEEeccCC
Q 026118           15 VSVDGNGVLYTATGDGWIKRMHPNGT-WEDWHQVGSQSLLGLTTTKENNVIIVCDSQ-QGLLKVSEEG--VTVLVSQFNG   90 (243)
Q Consensus        15 i~~d~~g~l~~~~~~~~i~~~~~~g~-~~~~~~~~~~~~~~i~~~~~g~l~~v~~~~-~gl~~~~~~g--~~~~~~~~~~   90 (243)
                      .+.+++..|+++.. ..|++++.++. ..........|. ++++++..+.||+++.. +.|++++.++  .+.+..    
T Consensus        39 ~~~~~~~~ll~~~~-~~I~~i~~~g~~~~~~~~~~~~~~-~l~~d~~~~~ly~~D~~~~~I~r~~~~g~~~~~~~~----  112 (349)
T 3v64_C           39 KALGPEPVLLFANR-IDIRQVLPHRSEYTLLLNNLENAI-ALDFHHRRELVFWSDVTLDRILRANLNGSNVEEVVS----  112 (349)
T ss_dssp             EESSSCCEEEEECB-SCEEEECTTSCCEEEEECSCSCEE-EEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEEC----
T ss_pred             cccccCceeEeecc-cceEEEeCCCCeeEEeecCCCceE-EEEEeccccEEEEEeccCCceEEEecCCCCceEEEe----
Confidence            33445566777754 46999996664 444333445678 99999644444888765 4588888444  444332    


Q ss_pred             CcccCCccEEEcC-CCcEEEEeCCCCCCcccccccccccCCCceEEEEeCCCCeeEEee-ccccccceEEEcCCCCEEEE
Q 026118           91 SQLRFANDVIEAS-DGSLYFTVSSTKFTPAEYYLDLVSGEPHGVLLKYDPSTNQTSLVL-DGLYFANGVALSEDERFLVV  168 (243)
Q Consensus        91 ~~~~~~~~l~~d~-~G~l~v~~~~~~~~~~~~~~~~~~~~~~g~v~~~~~~~~~~~~~~-~~~~~~~gi~~~~dg~~l~v  168 (243)
                      .....|.++++|+ .|+||+++..                 .+.|+++++++...+.+. .....|++|+++|.+..||+
T Consensus       113 ~~~~~p~glavd~~~g~ly~~d~~-----------------~~~I~~~~~dG~~~~~l~~~~l~~P~~iavdp~~g~ly~  175 (349)
T 3v64_C          113 TGLESPGGLAVDWVHDKLYWTDSG-----------------TSRIEVANLDGAHRKVLLWQSLEKPRAIALHPMEGTIYW  175 (349)
T ss_dssp             SSCSCCCEEEEETTTTEEEEEETT-----------------TTEEEEEETTSCSCEEEECTTCSCEEEEEEETTTTEEEE
T ss_pred             CCCCCccEEEEecCCCeEEEEcCC-----------------CCeEEEEcCCCCceEEEEeCCCCCcceEEEecCcCeEEE
Confidence            1235688999997 6789999754                 358999999855444443 45678999999998778999


Q ss_pred             EEcCC-CeEEEEEeecCCCcceEEeccCCCCCCCceEECC-CCCEEEEEecCC
Q 026118          169 CESWK-FRCVKHFLKVSGRTDREIFIDNLPGGPDNVNLAR-DGSFWISIIKMD  219 (243)
Q Consensus       169 ~~~~~-~~i~~~~~~~~~~~~~~~~~~~~~~~~~~i~~d~-~G~lwv~~~~~~  219 (243)
                      ++... +.|++++.++.   ..+.+.......|.+|++|+ +++||+++...+
T Consensus       176 td~~~~~~I~r~~~dG~---~~~~~~~~~~~~PnGla~d~~~~~lY~aD~~~~  225 (349)
T 3v64_C          176 TDWGNTPRIEASSMDGS---GRRIIADTHLFWPNGLTIDYAGRRMYWVDAKHH  225 (349)
T ss_dssp             EECSSSCEEEEEETTSC---SCEESCCSSCSCEEEEEEETTTTEEEEEETTTT
T ss_pred             eccCCCCEEEEEeCCCC---CcEEEEECCCCCcceEEEeCCCCEEEEEECCCC
Confidence            99887 89999998763   22333323345799999995 667999986543

>3hxj_A Pyrrolo-quinoline quinone; all beta protein. incomplete 8-blade beta-propeller., struct genomics, PSI-2, protein structure initiative; 2.00A {Methanococcus maripaludis}

Probab=99.60  E-value=3.6e-13  Score=108.79  Aligned_cols=179  Identities=11%  Similarity=0.112  Sum_probs=118.7

Q ss_pred             cccEEEcCCCcEEEEeCCCcEEEEccCCceeEecccCCccccceEEccCCCEEEEEeCCCcEEEEecCCcEEEEeccCCC
Q 026118           12 PEDVSVDGNGVLYTATGDGWIKRMHPNGTWEDWHQVGSQSLLGLTTTKENNVIIVCDSQQGLLKVSEEGVTVLVSQFNGS   91 (243)
Q Consensus        12 p~~i~~d~~g~l~~~~~~~~i~~~~~~g~~~~~~~~~~~~~~~i~~~~~g~l~~v~~~~~gl~~~~~~g~~~~~~~~~~~   91 (243)
                      ..+++++++|.||+++.+++|+++++.++..............+.++.+|++ |+++  .+|++++.++.........  
T Consensus       139 ~~~~~~~~~g~l~vgt~~~~l~~~d~~g~~~~~~~~~~~~~~~~~~d~~g~l-~v~t--~~l~~~d~~g~~~~~~~~~--  213 (330)
T 3hxj_A          139 YATPIVSEDGTIYVGSNDNYLYAINPDGTEKWRFKTNDAITSAASIGKDGTI-YFGS--DKVYAINPDGTEKWNFYAG--  213 (330)
T ss_dssp             CSCCEECTTSCEEEECTTSEEEEECTTSCEEEEEECSSCCCSCCEECTTCCE-EEES--SSEEEECTTSCEEEEECCS--
T ss_pred             eeeeEEcCCCEEEEEcCCCEEEEECCCCCEeEEEecCCCceeeeEEcCCCEE-EEEe--CEEEEECCCCcEEEEEccC--
Confidence            3456788889999998888999999666543222211222326788888998 9988  7899999655222221111  


Q ss_pred             cccCCccEEEcCCCcEEEEeCCCCCCcccccccccccCCCceEEEEeCCCCeeEEeeccccccceEEEcCCCCEEEEEEc
Q 026118           92 QLRFANDVIEASDGSLYFTVSSTKFTPAEYYLDLVSGEPHGVLLKYDPSTNQTSLVLDGLYFANGVALSEDERFLVVCES  171 (243)
Q Consensus        92 ~~~~~~~l~~d~~G~l~v~~~~~~~~~~~~~~~~~~~~~~g~v~~~~~~~~~~~~~~~~~~~~~gi~~~~dg~~l~v~~~  171 (243)
                       ...+.+++++++|++|+++..                  ++|+++++++..+............++++++++ ||++..
T Consensus       214 -~~~~~~~~~~~~g~l~v~t~~------------------~gl~~~~~~g~~~~~~~~~~~~~~~~~~~~~g~-l~v~t~  273 (330)
T 3hxj_A          214 -YWTVTRPAISEDGTIYVTSLD------------------GHLYAINPDGTEKWRFKTGKRIESSPVIGNTDT-IYFGSY  273 (330)
T ss_dssp             -SCCCSCCEECTTSCEEEEETT------------------TEEEEECTTSCEEEEEECSSCCCSCCEECTTSC-EEEECT
T ss_pred             -CcceeceEECCCCeEEEEcCC------------------CeEEEECCCCCEeEEeeCCCCccccceEcCCCe-EEEecC
Confidence             134667789999999998632                  589999987555444443334455678887887 999854


Q ss_pred             CCCeEEEEEeecCCCcceEEeccCCCCCCCceEECCCCCEEEEEecCCc
Q 026118          172 WKFRCVKHFLKVSGRTDREIFIDNLPGGPDNVNLARDGSFWISIIKMDP  220 (243)
Q Consensus       172 ~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~i~~d~~G~lwv~~~~~~~  220 (243)
                       ++.|++++.++. .  ...+. ........++.|++|+||+++..+..
T Consensus       274 -~ggl~~~d~~g~-~--~~~~~-~~~~~~~~~~~d~~g~l~~gt~~G~~  317 (330)
T 3hxj_A          274 -DGHLYAINPDGT-E--KWNFE-TGSWIIATPVIDENGTIYFGTRNGKF  317 (330)
T ss_dssp             -TCEEEEECTTSC-E--EEEEE-CSSCCCSCCEECTTCCEEEECTTSCE
T ss_pred             -CCCEEEECCCCc-E--EEEEE-cCCccccceEEcCCCEEEEEcCCCeE
Confidence             568999985332 1  11111 12234566889999999999987754

>3hfq_A Uncharacterized protein LP_2219; Q88V64_lacpl, NESG, LPR118, structural genomics, PSI-2, protein structure initiative; 1.96A {Lactobacillus plantarum}

Probab=99.60  E-value=9e-13  Score=107.40  Aligned_cols=192  Identities=18%  Similarity=0.117  Sum_probs=123.1

Q ss_pred             cCCcccEEEcCCCc-EEEEe-CCCcEEEEc--cCCceeEeccc---C---------CccccceEEccCCCEEEEEeCCCc
Q 026118            9 VNHPEDVSVDGNGV-LYTAT-GDGWIKRMH--PNGTWEDWHQV---G---------SQSLLGLTTTKENNVIIVCDSQQG   72 (243)
Q Consensus         9 ~~~p~~i~~d~~g~-l~~~~-~~~~i~~~~--~~g~~~~~~~~---~---------~~~~~~i~~~~~g~l~~v~~~~~g   72 (243)
                      ...|.+|+++++|. ||++. .++.|..++  .+++.......   .         ..+. +++++++|++ |+++...+
T Consensus        85 ~~~p~~~a~spdg~~l~~~~~~~~~v~v~~~~~~g~~~~~~~~~~~~~~p~~~~~~~~~~-~~~~spdg~l-~v~~~~~~  162 (347)
T 3hfq_A           85 GTPPAYVAVDEARQLVYSANYHKGTAEVMKIAADGALTLTDTVQHSGHGPRPEQDGSHIH-YTDLTPDNRL-AVIDLGSD  162 (347)
T ss_dssp             SCCCSEEEEETTTTEEEEEETTTTEEEEEEECTTSCEEEEEEEECCCCCSSTTCSSCCEE-EEEECTTSCE-EEEETTTT
T ss_pred             CCCCEEEEECCCCCEEEEEeCCCCEEEEEEeCCCCCeeecceeecCCCCCCccccCCCce-EEEECCCCcE-EEEeCCCC
Confidence            45799999999996 88887 567777776  44554432211   0         1244 6899999995 88886544


Q ss_pred             -EEEEe-c-CC-cEEEEeccCCCcccCCccEEEcCCCc-EEEEeCCCCCCcccccccccccCCCceEEEEeCCCCeeEEe
Q 026118           73 -LLKVS-E-EG-VTVLVSQFNGSQLRFANDVIEASDGS-LYFTVSSTKFTPAEYYLDLVSGEPHGVLLKYDPSTNQTSLV  147 (243)
Q Consensus        73 -l~~~~-~-~g-~~~~~~~~~~~~~~~~~~l~~d~~G~-l~v~~~~~~~~~~~~~~~~~~~~~~g~v~~~~~~~~~~~~~  147 (243)
                       +..++ . ++ ....... .......|.+++++|||+ +|+++..               ...-.+|.++..+++++..
T Consensus       163 ~v~~~~~~~~g~~~~~~~~-~~~~g~~p~~~~~spdg~~l~v~~~~---------------~~~v~v~~~~~~~g~~~~~  226 (347)
T 3hfq_A          163 KVYVYNVSDAGQLSEQSVL-TMEAGFGPRHLVFSPDGQYAFLAGEL---------------SSQIASLKYDTQTGAFTQL  226 (347)
T ss_dssp             EEEEEEECTTSCEEEEEEE-ECCTTCCEEEEEECTTSSEEEEEETT---------------TTEEEEEEEETTTTEEEEE
T ss_pred             EEEEEEECCCCcEEEeeeE-EcCCCCCCceEEECCCCCEEEEEeCC---------------CCEEEEEEecCCCCceEEe
Confidence             77777 4 56 4433221 111223577899999998 7776533               1112455666655765443


Q ss_pred             ec--c-------ccccceEEEcCCCCEEEEEEcCCCeEEEEEeecC-CCcceEEeccCCCCCCCceEECCCCC-EEEEEe
Q 026118          148 LD--G-------LYFANGVALSEDERFLVVCESWKFRCVKHFLKVS-GRTDREIFIDNLPGGPDNVNLARDGS-FWISII  216 (243)
Q Consensus       148 ~~--~-------~~~~~gi~~~~dg~~l~v~~~~~~~i~~~~~~~~-~~~~~~~~~~~~~~~~~~i~~d~~G~-lwv~~~  216 (243)
                      ..  .       ...+.+++++|||++||++...++.|..|+++.. .+.....+. .....|.+++++++|+ ||++..
T Consensus       227 ~~~~~~~~~~~~~~~~~~i~~spdG~~l~v~~~~~~~v~v~~~~~~g~~~~~~~~~-~~~~~~~~~~~spdg~~l~v~~~  305 (347)
T 3hfq_A          227 GIVKTIPADYTAHNGAAAIRLSHDGHFLYVSNRGYNTLAVFAVTADGHLTLIQQIS-TEGDFPRDFDLDPTEAFVVVVNQ  305 (347)
T ss_dssp             EEEESSCTTCCSCCEEEEEEECTTSCEEEEEEETTTEEEEEEECGGGCEEEEEEEE-CSSSCCCEEEECTTSSEEEEEET
T ss_pred             eeeeecCCCCCCCCcceeEEECCCCCEEEEEeCCCCEEEEEEECCCCcEEEeEEEe-cCCCCcCeEEECCCCCEEEEEEc
Confidence            21  1       1346789999999999999888899999998632 222222221 2234689999999998 777765


Q ss_pred             cCC
Q 026118          217 KMD  219 (243)
Q Consensus       217 ~~~  219 (243)
                      ..+
T Consensus       306 ~~~  308 (347)
T 3hfq_A          306 NTD  308 (347)
T ss_dssp             TTT
T ss_pred             CCC
Confidence            533

>2p9w_A MAL S 1 allergenic protein; beta propeller; 1.35A {Malassezia sympodialis}

Probab=99.60  E-value=8.4e-14  Score=111.59  Aligned_cols=189  Identities=12%  Similarity=0.095  Sum_probs=124.7

Q ss_pred             cccCCcccEEEcC-CCcEEEEe-CCCcEEEEccC-CceeEecccC----C----ccccceEE---ccCCCEEEEEeC---
Q 026118            7 GIVNHPEDVSVDG-NGVLYTAT-GDGWIKRMHPN-GTWEDWHQVG----S----QSLLGLTT---TKENNVIIVCDS---   69 (243)
Q Consensus         7 g~~~~p~~i~~d~-~g~l~~~~-~~~~i~~~~~~-g~~~~~~~~~----~----~~~~~i~~---~~~g~l~~v~~~---   69 (243)
                      ++-.-||++.+|+ +|++|+++ ..+.|.+++++ +.......+.    +    .+. ||.+   |++|+| |++..   
T Consensus        10 ~~~~yPE~~~wd~~~g~~~vs~l~~g~V~~~~~~~~~~~~~~~~~~s~~g~~~~~~s-Gl~~~~~D~~grL-~vv~~~~~   87 (334)
T 2p9w_A           10 VKNLTPEDTIYDRTRQVFYQSNLYKGRIEVYNPKTQSHFNVVIDGASSNGDGEQQMS-GLSLLTHDNSKRL-FAVMKNAK   87 (334)
T ss_dssp             CTTCCCSCEEEETTTTEEEEEETTTTEEEEECTTTCCEEEECCTTTCCSSCCSEEEE-EEEESSSSSCCEE-EEEEEETT
T ss_pred             CcccCCcCccCcCCCCEEEEEeccCCEEEEEcCCCCeEEEEecCCccccCCCcceee-EEEEeccCCCCcE-EEEEcccc
Confidence            3456899999985 88999999 78999999976 4444442221    1    245 9999   788888 77432   


Q ss_pred             -----------CCcEEEEe-c---CC-cEEEEe--ccC-------CCcccCCccEEEcCCCcEEEEeCCCCCCccccccc
Q 026118           70 -----------QQGLLKVS-E---EG-VTVLVS--QFN-------GSQLRFANDVIEASDGSLYFTVSSTKFTPAEYYLD  124 (243)
Q Consensus        70 -----------~~gl~~~~-~---~g-~~~~~~--~~~-------~~~~~~~~~l~~d~~G~l~v~~~~~~~~~~~~~~~  124 (243)
                                 ...|+++| .   ++ ......  ...       +.....+++|++|++|++|++++.           
T Consensus        88 af~~~g~~~~g~~~v~~~Dl~~~~tg~~~~~~dL~~~~~~~~~~~g~~~~~~nDvavD~~GnaYVt~s~-----------  156 (334)
T 2p9w_A           88 SFNFADQSSHGASSFHSFNLPLSENSKPVWSVNFEKVQDEFEKKAGKRPFGVVQSAQDRDGNSYVAFAL-----------  156 (334)
T ss_dssp             TTCTTSCCSSSCCEEEEEESSCCTTCCCSEEEESHHHHHHHHHHHSSCCEEEEEEEECTTSCEEEEEEE-----------
T ss_pred             cccccccccCCCCEEEEEcCCcCCCCCEEEEecCccccccccccccccccCCceeEECCCCCEEEeCCC-----------
Confidence                       24589999 6   46 322222  111       112345889999999999998643           


Q ss_pred             ccccCCC-ceEEEEeCCCCeeEEee------ccccccceEEEcCCCCEEEEEEcCCCeEEEEEeecCCCcceEEecc--C
Q 026118          125 LVSGEPH-GVLLKYDPSTNQTSLVL------DGLYFANGVALSEDERFLVVCESWKFRCVKHFLKVSGRTDREIFID--N  195 (243)
Q Consensus       125 ~~~~~~~-g~v~~~~~~~~~~~~~~------~~~~~~~gi~~~~dg~~l~v~~~~~~~i~~~~~~~~~~~~~~~~~~--~  195 (243)
                            . +.|+++++++.......      .....++||+++|+|+.|++.+. .++|+++|+...  ....+-..  +
T Consensus       157 ------~~~~I~rV~pdG~~~~~~~~~~~~~~~~~G~nGIv~~pdg~~Liv~~~-~g~L~~fD~~~p--v~~~v~~~~~G  227 (334)
T 2p9w_A          157 ------GMPAIARVSADGKTVSTFAWESGNGGQRPGYSGITFDPHSNKLIAFGG-PRALTAFDVSKP--YAWPEPVKING  227 (334)
T ss_dssp             ------SSCEEEEECTTSCCEEEEEECCCCSSSCCSCSEEEEETTTTEEEEESS-SSSEEEEECSSS--SCCCEECEESS
T ss_pred             ------CCCeEEEEeCCCCEEeeeeecCCCcccccCcceEEEeCCCCEEEEEcC-CCeEEEEcCCCC--cceeecccccC
Confidence                  2 57999999954444332      11234789999999998888877 899999998732  11011110  1


Q ss_pred             ---CCCCCCce-EECCCCCE-EEEEec
Q 026118          196 ---LPGGPDNV-NLARDGSF-WISIIK  217 (243)
Q Consensus       196 ---~~~~~~~i-~~d~~G~l-wv~~~~  217 (243)
                         ....+++| ....+|++ +|+...
T Consensus       228 ~~~~~~~~dgilp~~~~G~vllV~~~~  254 (334)
T 2p9w_A          228 DFGTLSGTEKIVTVPVGNESVLVGARA  254 (334)
T ss_dssp             CCCCCTTEEEEEEEEETTEEEEEEEET
T ss_pred             CcccccCcccccccccCCEEEEEEcCC
Confidence               22357885 66678886 776643

>3sov_A LRP-6, low-density lipoprotein receptor-related protein; beta propeller, protein binding-antagonist complex; HET: NAG FUC; 1.27A {Homo sapiens} PDB: 3soq_A* 3sob_B

Probab=99.59  E-value=3.2e-13  Score=109.39  Aligned_cols=153  Identities=13%  Similarity=0.134  Sum_probs=114.0

Q ss_pred             cccCCcccEEEcC-CCcEEEEe-CCCcEEEEccCCceeEec--ccCCccccceEEccCCCEEEEEeCC--CcEEEEecCC
Q 026118            7 GIVNHPEDVSVDG-NGVLYTAT-GDGWIKRMHPNGTWEDWH--QVGSQSLLGLTTTKENNVIIVCDSQ--QGLLKVSEEG   80 (243)
Q Consensus         7 g~~~~p~~i~~d~-~g~l~~~~-~~~~i~~~~~~g~~~~~~--~~~~~~~~~i~~~~~g~l~~v~~~~--~gl~~~~~~g   80 (243)
                      ..+..|++|++|. +|.||+++ ..++|.+++.+|......  .....|. +|++|+.+..||+++..  ..|++++.+|
T Consensus        76 ~~l~~p~glavd~~~g~ly~~d~~~~~I~~~~~dG~~~~~l~~~~~~~P~-giavdp~~g~ly~td~~~~~~I~r~~~dG  154 (318)
T 3sov_A           76 SGLLSPDGLACDWLGEKLYWTDSETNRIEVSNLDGSLRKVLFWQELDQPR-AIALDPSSGFMYWTDWGEVPKIERAGMDG  154 (318)
T ss_dssp             ECCSCCCEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEECSSCSSEE-EEEEEGGGTEEEEEECSSSCEEEEEETTS
T ss_pred             CCCCCccEEEEEcCCCeEEEEECCCCEEEEEECCCCcEEEEEeCCCCCcc-EEEEeCCCCEEEEEecCCCCEEEEEEcCC
Confidence            3477899999995 78999998 667899999777543322  3345688 99999864444888853  4689998655


Q ss_pred             --cEEEEeccCCCcccCCccEEEcC-CCcEEEEeCCCCCCcccccccccccCCCceEEEEeCCCCeeEEeec-cccccce
Q 026118           81 --VTVLVSQFNGSQLRFANDVIEAS-DGSLYFTVSSTKFTPAEYYLDLVSGEPHGVLLKYDPSTNQTSLVLD-GLYFANG  156 (243)
Q Consensus        81 --~~~~~~~~~~~~~~~~~~l~~d~-~G~l~v~~~~~~~~~~~~~~~~~~~~~~g~v~~~~~~~~~~~~~~~-~~~~~~g  156 (243)
                        .+.+..    .....|++|++|+ +++||++|..                 ...|++++.++...+.+.. ....|.|
T Consensus       155 ~~~~~~~~----~~l~~Pnglavd~~~~~lY~aD~~-----------------~~~I~~~d~dG~~~~~~~~~~~~~P~g  213 (318)
T 3sov_A          155 SSRFIIIN----SEIYWPNGLTLDYEEQKLYWADAK-----------------LNFIHKSNLDGTNRQAVVKGSLPHPFA  213 (318)
T ss_dssp             CSCEEEEC----SSCSCEEEEEEETTTTEEEEEETT-----------------TTEEEEEETTSCSCEEEECSCCSCEEE
T ss_pred             CCeEEEEE----CCCCCccEEEEeccCCEEEEEECC-----------------CCEEEEEcCCCCceEEEecCCCCCceE
Confidence              444432    1246789999998 6789999854                 3589999998655555544 5788999


Q ss_pred             EEEcCCCCEEEEEEcCCCeEEEEEeec
Q 026118          157 VALSEDERFLVVCESWKFRCVKHFLKV  183 (243)
Q Consensus       157 i~~~~dg~~l~v~~~~~~~i~~~~~~~  183 (243)
                      |+++.  ..+||++..+++|.+++...
T Consensus       214 lav~~--~~lywtd~~~~~V~~~~~~~  238 (318)
T 3sov_A          214 LTLFE--DILYWTDWSTHSILACNKYT  238 (318)
T ss_dssp             EEEET--TEEEEEETTTTEEEEEETTT
T ss_pred             EEEeC--CEEEEEecCCCeEEEEECCC
Confidence            99963  35999999999999999853

>3dr2_A Exported gluconolactonase; gluconolactonase SMP-30, six-bladed-propeller dimer, vitamin C, hydrolase; 1.67A {Xanthomonas campestris PV}

Probab=99.59  E-value=3.1e-13  Score=108.63  Aligned_cols=148  Identities=11%  Similarity=0.129  Sum_probs=106.3

Q ss_pred             cCCcccEEEcCCCcEEEEeC------------------CCcEEEEcc-CCceeEecccCCccccceEEccCCCEEEEEeC
Q 026118            9 VNHPEDVSVDGNGVLYTATG------------------DGWIKRMHP-NGTWEDWHQVGSQSLLGLTTTKENNVIIVCDS   69 (243)
Q Consensus         9 ~~~p~~i~~d~~g~l~~~~~------------------~~~i~~~~~-~g~~~~~~~~~~~~~~~i~~~~~g~l~~v~~~   69 (243)
                      +..|..+++|++|++|+++.                  .++|+++++ ++++..+. ....|. +++++++|+.||+++.
T Consensus       130 ~~~~~~i~~d~dG~l~~td~~~g~~~~~~~~~~~~~~~~~~v~~~d~~~g~~~~~~-~~~~p~-gl~~spdg~~lyv~~~  207 (305)
T 3dr2_A          130 LNSPNDLIVARDGAIWFTDPPFGLRKPSQGCPADPELAHHSVYRLPPDGSPLQRMA-DLDHPN-GLAFSPDEQTLYVSQT  207 (305)
T ss_dssp             CSCCCCEEECTTSCEEEECCSGGGSCGGGSCCCCCSSSCEEEEEECSSSCCCEEEE-EESSEE-EEEECTTSSEEEEEEC
T ss_pred             cCCCCCEEECCCCCEEEeCcCCCccccccccccccccCCCeEEEEcCCCCcEEEEe-cCCCCc-ceEEcCCCCEEEEEec
Confidence            56788999999999999631                  357999996 67766554 445678 9999999996699886


Q ss_pred             C------CcEEEEe-cCC-cEEEEeccCCCcccCCccEEEcCCCcEEEEeCCCCCCcccccccccccCCCceEEEEeCCC
Q 026118           70 Q------QGLLKVS-EEG-VTVLVSQFNGSQLRFANDVIEASDGSLYFTVSSTKFTPAEYYLDLVSGEPHGVLLKYDPST  141 (243)
Q Consensus        70 ~------~gl~~~~-~~g-~~~~~~~~~~~~~~~~~~l~~d~~G~l~v~~~~~~~~~~~~~~~~~~~~~~g~v~~~~~~~  141 (243)
                      .      ..|++++ ..+ ......... .....|.+|++|++|++|+++.                   ++|+++++++
T Consensus       208 ~~~~~~~~~i~~~~~~~~~l~~~~~~~~-~~~~~pdgi~~d~~G~lwv~~~-------------------~gv~~~~~~g  267 (305)
T 3dr2_A          208 PEQGHGSVEITAFAWRDGALHDRRHFAS-VPDGLPDGFCVDRGGWLWSSSG-------------------TGVCVFDSDG  267 (305)
T ss_dssp             CC---CCCEEEEEEEETTEEEEEEEEEC-CSSSCCCSEEECTTSCEEECCS-------------------SEEEEECTTS
T ss_pred             CCcCCCCCEEEEEEecCCCccCCeEEEE-CCCCCCCeEEECCCCCEEEecC-------------------CcEEEECCCC
Confidence            5      4688888 433 211111011 1234678999999999999852                   3699999985


Q ss_pred             CeeEEeeccccccceEEEcCCCCEEEEEEcCCCeEEEEEe
Q 026118          142 NQTSLVLDGLYFANGVALSEDERFLVVCESWKFRCVKHFL  181 (243)
Q Consensus       142 ~~~~~~~~~~~~~~gi~~~~dg~~l~v~~~~~~~i~~~~~  181 (243)
                      ..+..+... ..+..++|+++++.||++..  +.|+++++
T Consensus       268 ~~~~~~~~~-~~~~~~~f~~d~~~L~it~~--~~l~~~~~  304 (305)
T 3dr2_A          268 QLLGHIPTP-GTASNCTFDQAQQRLFITGG--PCLWMLPL  304 (305)
T ss_dssp             CEEEEEECS-SCCCEEEECTTSCEEEEEET--TEEEEEEC
T ss_pred             CEEEEEECC-CceeEEEEeCCCCEEEEEcC--CeEEEEEC
Confidence            544444332 35888999999999999964  58888863

>3v65_B Low-density lipoprotein receptor-related protein; laminin-G, beta-propeller, protein binding; 3.30A {Rattus norvegicus}

Probab=99.58  E-value=4e-13  Score=111.72  Aligned_cols=179  Identities=16%  Similarity=0.140  Sum_probs=123.4

Q ss_pred             EEEcCCCcEEEEeCCCcEEEEccCC-ceeEecccCCccccceEEccCCCEEEEEeCC-CcEEEEecCC--cEEEEeccCC
Q 026118           15 VSVDGNGVLYTATGDGWIKRMHPNG-TWEDWHQVGSQSLLGLTTTKENNVIIVCDSQ-QGLLKVSEEG--VTVLVSQFNG   90 (243)
Q Consensus        15 i~~d~~g~l~~~~~~~~i~~~~~~g-~~~~~~~~~~~~~~~i~~~~~g~l~~v~~~~-~gl~~~~~~g--~~~~~~~~~~   90 (243)
                      .+.++.+.|+++.. ..|++++.++ .+.........|. ++++++.++.||+++.. +.|++++.++  .+.+..    
T Consensus        82 ~~~~~~~~l~~~~~-~~I~~i~~~~~~~~~~~~~~~~~~-gl~~d~~~~~ly~~D~~~~~I~r~~~~g~~~~~~~~----  155 (386)
T 3v65_B           82 KALGPEPVLLFANR-IDIRQVLPHRSEYTLLLNNLENAI-ALDFHHRRELVFWSDVTLDRILRANLNGSNVEEVVS----  155 (386)
T ss_dssp             EECSSCCEEEEECB-SCEEEECTTSCCCEEEECSCSCEE-EEEEETTTTEEEEEETTTTEEEEEETTSCCEEEEEC----
T ss_pred             CCccccceeEeecC-ccceeeccCCCcEEEEecCCCccE-EEEEecCCCeEEEEeCCCCcEEEEecCCCCcEEEEe----
Confidence            33445566777754 5799999654 4444444446678 99999644433888765 4588888544  333332    


Q ss_pred             CcccCCccEEEcC-CCcEEEEeCCCCCCcccccccccccCCCceEEEEeCCCCeeEEee-ccccccceEEEcCCCCEEEE
Q 026118           91 SQLRFANDVIEAS-DGSLYFTVSSTKFTPAEYYLDLVSGEPHGVLLKYDPSTNQTSLVL-DGLYFANGVALSEDERFLVV  168 (243)
Q Consensus        91 ~~~~~~~~l~~d~-~G~l~v~~~~~~~~~~~~~~~~~~~~~~g~v~~~~~~~~~~~~~~-~~~~~~~gi~~~~dg~~l~v  168 (243)
                      .....|.+|++|+ .|+||+++..                 ...|+++++++...+.+. .....|++|+++|.+..|||
T Consensus       156 ~~~~~p~glavd~~~g~lY~~d~~-----------------~~~I~~~~~dg~~~~~l~~~~l~~P~giavdp~~g~ly~  218 (386)
T 3v65_B          156 TGLESPGGLAVDWVHDKLYWTDSG-----------------TSRIEVANLDGAHRKVLLWQSLEKPRAIALHPMEGTIYW  218 (386)
T ss_dssp             SSCSCCCCEEEETTTTEEEEEETT-----------------TTEEEECBTTSCSCEEEECSSCSCEEEEEEETTTTEEEE
T ss_pred             CCCCCccEEEEEeCCCeEEEEcCC-----------------CCeEEEEeCCCCceEEeecCCCCCCcEEEEEcCCCeEEE
Confidence            1235688999997 6789999754                 348999999855444443 45678999999998888999


Q ss_pred             EEcCC-CeEEEEEeecCCCcceEEeccCCCCCCCceEECC-CCCEEEEEecCC
Q 026118          169 CESWK-FRCVKHFLKVSGRTDREIFIDNLPGGPDNVNLAR-DGSFWISIIKMD  219 (243)
Q Consensus       169 ~~~~~-~~i~~~~~~~~~~~~~~~~~~~~~~~~~~i~~d~-~G~lwv~~~~~~  219 (243)
                      ++... +.|++++.++.   ..+.+.......|.+|++|+ +++||+++...+
T Consensus       219 td~~~~~~I~r~~~dG~---~~~~~~~~~~~~PnGlavd~~~~~lY~aD~~~~  268 (386)
T 3v65_B          219 TDWGNTPRIEASSMDGS---GRRIIADTHLFWPNGLTIDYAGRRMYWVDAKHH  268 (386)
T ss_dssp             EECSSSCEEEEEETTSC---SCEEEECSSCSCEEEEEEEGGGTEEEEEETTTT
T ss_pred             eccCCCCEEEEEeCCCC---CcEEEEECCCCCeeeEEEeCCCCEEEEEECCCC
Confidence            99877 89999998763   22333323344799999994 677999986543

>1ijq_A LDL receptor, low-density lipoprotein receptor; beta-propeller, lipid transport; 1.50A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1

Probab=99.56  E-value=1.3e-12  Score=105.84  Aligned_cols=153  Identities=15%  Similarity=0.170  Sum_probs=112.0

Q ss_pred             cccCCcccEEEcC-CCcEEEEe-CCCcEEEEccCCcee-Eecc-cCCccccceEEccCCCEEEEEeCC--CcEEEEecCC
Q 026118            7 GIVNHPEDVSVDG-NGVLYTAT-GDGWIKRMHPNGTWE-DWHQ-VGSQSLLGLTTTKENNVIIVCDSQ--QGLLKVSEEG   80 (243)
Q Consensus         7 g~~~~p~~i~~d~-~g~l~~~~-~~~~i~~~~~~g~~~-~~~~-~~~~~~~~i~~~~~g~l~~v~~~~--~gl~~~~~~g   80 (243)
                      ..+..|.+|++|. +++||+++ ..+.|.+++.+|+.. .+.. ....|. +|++|+++..||+++..  ..|++++.+|
T Consensus        74 ~~~~~p~glavd~~~~~ly~~d~~~~~I~~~~~~g~~~~~~~~~~~~~P~-~iavdp~~g~ly~~d~~~~~~I~~~~~dG  152 (316)
T 1ijq_A           74 RDIQAPDGLAVDWIHSNIYWTDSVLGTVSVADTKGVKRKTLFRENGSKPR-AIVVDPVHGFMYWTDWGTPAKIKKGGLNG  152 (316)
T ss_dssp             SSCSCCCEEEEETTTTEEEEEETTTTEEEEEETTSSSEEEEEECTTCCEE-EEEEETTTTEEEEEECSSSCEEEEEETTS
T ss_pred             CCCCCcCEEEEeecCCeEEEEECCCCEEEEEeCCCCceEEEEECCCCCcc-eEEeCCCCCEEEEEccCCCCeEEEEcCCC
Confidence            3467899999995 77899997 678899999777533 2222 335788 99999855544888865  4688888666


Q ss_pred             --cEEEEeccCCCcccCCccEEEcC-CCcEEEEeCCCCCCcccccccccccCCCceEEEEeCCCCeeEEeec---ccccc
Q 026118           81 --VTVLVSQFNGSQLRFANDVIEAS-DGSLYFTVSSTKFTPAEYYLDLVSGEPHGVLLKYDPSTNQTSLVLD---GLYFA  154 (243)
Q Consensus        81 --~~~~~~~~~~~~~~~~~~l~~d~-~G~l~v~~~~~~~~~~~~~~~~~~~~~~g~v~~~~~~~~~~~~~~~---~~~~~  154 (243)
                        .+.+...    ....|++|++|+ +++||+++..                 ...|++++.++...+.+..   ....|
T Consensus       153 ~~~~~~~~~----~~~~P~gla~d~~~~~lY~~D~~-----------------~~~I~~~d~dg~~~~~~~~~~~~~~~P  211 (316)
T 1ijq_A          153 VDIYSLVTE----NIQWPNGITLDLLSGRLYWVDSK-----------------LHSISSIDVNGGNRKTILEDEKRLAHP  211 (316)
T ss_dssp             CCEEEEECS----SCSCEEEEEEETTTTEEEEEETT-----------------TTEEEEEETTSCSCEEEEECTTTTSSE
T ss_pred             CCeEEEEEC----CCCCceEEEEeccCCEEEEEECC-----------------CCeEEEEecCCCceEEEeecCCccCCc
Confidence              3333321    246789999997 5789999854                 3589999998655555543   35679


Q ss_pred             ceEEEcCCCCEEEEEEcCCCeEEEEEeec
Q 026118          155 NGVALSEDERFLVVCESWKFRCVKHFLKV  183 (243)
Q Consensus       155 ~gi~~~~dg~~l~v~~~~~~~i~~~~~~~  183 (243)
                      .||+++. + .|||++..+++|.+++...
T Consensus       212 ~giav~~-~-~ly~~d~~~~~V~~~~~~~  238 (316)
T 1ijq_A          212 FSLAVFE-D-KVFWTDIINEAIFSANRLT  238 (316)
T ss_dssp             EEEEEET-T-EEEEEETTTTEEEEEETTT
T ss_pred             EEEEEEC-C-EEEEEECCCCeEEEEeCCC
Confidence            9999963 4 5999999999999998743

>2ghs_A AGR_C_1268P; regucalcin, structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PSI-2; 1.55A {Agrobacterium tumefaciens str} SCOP: b.68.6.1

Probab=99.55  E-value=8.3e-13  Score=107.28  Aligned_cols=178  Identities=11%  Similarity=0.060  Sum_probs=122.3

Q ss_pred             CcccEEEcCCCcEEEEeCCCcEEEEcc-CCceeEeccc-----CCccccceEEccCCCEEEEEeCC-------CcEEEEe
Q 026118           11 HPEDVSVDGNGVLYTATGDGWIKRMHP-NGTWEDWHQV-----GSQSLLGLTTTKENNVIIVCDSQ-------QGLLKVS   77 (243)
Q Consensus        11 ~p~~i~~d~~g~l~~~~~~~~i~~~~~-~g~~~~~~~~-----~~~~~~~i~~~~~g~l~~v~~~~-------~gl~~~~   77 (243)
                      .|.+++++++|++|++.. .+|++++. ++++..+...     ...+. +++++++|++ |+++..       .+|++++
T Consensus        91 ~v~~i~~~~dg~l~v~~~-~gl~~~d~~~g~~~~~~~~~~~~~~~~~~-~i~~d~~G~l-~v~~~~~~~~~~~~~l~~~~  167 (326)
T 2ghs_A           91 MGSALAKISDSKQLIASD-DGLFLRDTATGVLTLHAELESDLPGNRSN-DGRMHPSGAL-WIGTMGRKAETGAGSIYHVA  167 (326)
T ss_dssp             CEEEEEEEETTEEEEEET-TEEEEEETTTCCEEEEECSSTTCTTEEEE-EEEECTTSCE-EEEEEETTCCTTCEEEEEEE
T ss_pred             cceEEEEeCCCeEEEEEC-CCEEEEECCCCcEEEEeeCCCCCCCCCCC-CEEECCCCCE-EEEeCCCcCCCCceEEEEEe
Confidence            577899999999999874 46999994 6666554321     12355 8999999998 888742       4689998


Q ss_pred             cCC-cEEEEeccCCCcccCCccEEEcCCCc-EEEEeCCCCCCcccccccccccCCCceEEEEeCC--CC-ee---EEee-
Q 026118           78 EEG-VTVLVSQFNGSQLRFANDVIEASDGS-LYFTVSSTKFTPAEYYLDLVSGEPHGVLLKYDPS--TN-QT---SLVL-  148 (243)
Q Consensus        78 ~~g-~~~~~~~~~~~~~~~~~~l~~d~~G~-l~v~~~~~~~~~~~~~~~~~~~~~~g~v~~~~~~--~~-~~---~~~~-  148 (243)
                       ++ .+.+...     ...+++++++++|+ +|+++..                 .+.|++++.+  ++ ++   +.+. 
T Consensus       168 -~g~~~~~~~~-----~~~~~~i~~s~dg~~lyv~~~~-----------------~~~I~~~d~~~~~Gl~~~~~~~~~~  224 (326)
T 2ghs_A          168 -KGKVTKLFAD-----ISIPNSICFSPDGTTGYFVDTK-----------------VNRLMRVPLDARTGLPTGKAEVFID  224 (326)
T ss_dssp             -TTEEEEEEEE-----ESSEEEEEECTTSCEEEEEETT-----------------TCEEEEEEBCTTTCCBSSCCEEEEE
T ss_pred             -CCcEEEeeCC-----CcccCCeEEcCCCCEEEEEECC-----------------CCEEEEEEcccccCCcccCceEEEE
Confidence             66 4443321     23567899999995 8888643                 3578888864  55 32   1221 


Q ss_pred             --ccccccceEEEcCCCCEEEEEEcCCCeEEEEEeecCCCcceEEeccCCCCCCCceEEC-CCCC-EEEEEecCC
Q 026118          149 --DGLYFANGVALSEDERFLVVCESWKFRCVKHFLKVSGRTDREIFIDNLPGGPDNVNLA-RDGS-FWISIIKMD  219 (243)
Q Consensus       149 --~~~~~~~gi~~~~dg~~l~v~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~i~~d-~~G~-lwv~~~~~~  219 (243)
                        .....|.+++++++|+ +|++....+.|.+|++++.   ....+. .....|.+++++ ++++ ||+++...+
T Consensus       225 ~~~~~~~p~gi~~d~~G~-lwva~~~~~~v~~~d~~g~---~~~~i~-~~~~~~~~~af~g~d~~~L~vt~~~~~  294 (326)
T 2ghs_A          225 STGIKGGMDGSVCDAEGH-IWNARWGEGAVDRYDTDGN---HIARYE-VPGKQTTCPAFIGPDASRLLVTSAREH  294 (326)
T ss_dssp             CTTSSSEEEEEEECTTSC-EEEEEETTTEEEEECTTCC---EEEEEE-CSCSBEEEEEEESTTSCEEEEEEBCTT
T ss_pred             CCCCCCCCCeeEECCCCC-EEEEEeCCCEEEEECCCCC---EEEEEE-CCCCCcEEEEEecCCCCEEEEEecCCC
Confidence              1235688999999998 9999877789999987432   122222 122357789997 7764 999887654

>3vgz_A Uncharacterized protein YNCE; beta-propeller, protein binding; 1.70A {Escherichia coli} PDB: 3vh0_A*

Probab=99.55  E-value=2.1e-12  Score=105.00  Aligned_cols=190  Identities=13%  Similarity=0.132  Sum_probs=126.5

Q ss_pred             CCcccEEEcCCC-cEEEEeC-------CCcEEEEcc-CCceeEecccCCccccceEEccCCCEEEEEeCC-CcEEEEe-c
Q 026118           10 NHPEDVSVDGNG-VLYTATG-------DGWIKRMHP-NGTWEDWHQVGSQSLLGLTTTKENNVIIVCDSQ-QGLLKVS-E   78 (243)
Q Consensus        10 ~~p~~i~~d~~g-~l~~~~~-------~~~i~~~~~-~g~~~~~~~~~~~~~~~i~~~~~g~l~~v~~~~-~gl~~~~-~   78 (243)
                      ..|.+++++++| .||++..       ++.|+.+|. +++..........+. +++++++|+.+|++... ..|..+| .
T Consensus        41 ~~~~~~~~s~dg~~l~~~~~~~~~~~~~~~v~~~d~~~~~~~~~~~~~~~~~-~~~~s~dg~~l~v~~~~~~~v~~~d~~  119 (353)
T 3vgz_A           41 KGAYEMAYSQQENALWLATSQSRKLDKGGVVYRLDPVTLEVTQAIHNDLKPF-GATINNTTQTLWFGNTVNSAVTAIDAK  119 (353)
T ss_dssp             SSEEEEEEETTTTEEEEEECCCTTTEESEEEEEECTTTCCEEEEEEESSCCC-SEEEETTTTEEEEEETTTTEEEEEETT
T ss_pred             cCccceEECCCCCEEEEEcCCCcCCCCCccEEEEcCCCCeEEEEEecCCCcc-eEEECCCCCEEEEEecCCCEEEEEeCC
Confidence            468889999987 6888873       457999994 555444333345577 99999999965888764 4588888 5


Q ss_pred             CC-c-EEEEeccCC----CcccCCccEEEcCCCc-EEEEeCCCCCCcccccccccccCCCceEEEEeCCCCeeEEeec-c
Q 026118           79 EG-V-TVLVSQFNG----SQLRFANDVIEASDGS-LYFTVSSTKFTPAEYYLDLVSGEPHGVLLKYDPSTNQTSLVLD-G  150 (243)
Q Consensus        79 ~g-~-~~~~~~~~~----~~~~~~~~l~~d~~G~-l~v~~~~~~~~~~~~~~~~~~~~~~g~v~~~~~~~~~~~~~~~-~  150 (243)
                      ++ . ..+......    .....+.+++++++|+ +|+++..                ..+.|+.+|.++++...... .
T Consensus       120 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~----------------~~~~i~~~d~~~~~~~~~~~~~  183 (353)
T 3vgz_A          120 TGEVKGRLVLDDRKRTEEVRPLQPRELVADDATNTVYISGIG----------------KESVIWVVDGGNIKLKTAIQNT  183 (353)
T ss_dssp             TCCEEEEEESCCCCCCSSCCCCEEEEEEEETTTTEEEEEEES----------------SSCEEEEEETTTTEEEEEECCC
T ss_pred             CCeeEEEEecCCCccccccCCCCCceEEECCCCCEEEEEecC----------------CCceEEEEcCCCCceEEEecCC
Confidence            66 3 223221100    0112367899999987 7776422                23579999999887766554 3


Q ss_pred             ccccceEEEcCCCCEEEEEEcCCCeEEEEEeecCCCcceEEecc-CCCCCCCceEECCCCC-EEEEEec
Q 026118          151 LYFANGVALSEDERFLVVCESWKFRCVKHFLKVSGRTDREIFID-NLPGGPDNVNLARDGS-FWISIIK  217 (243)
Q Consensus       151 ~~~~~gi~~~~dg~~l~v~~~~~~~i~~~~~~~~~~~~~~~~~~-~~~~~~~~i~~d~~G~-lwv~~~~  217 (243)
                      ...+.+++++++|+++|++.. ++.|..+|.............. .....+.+++++++|+ +|++...
T Consensus       184 ~~~~~~~~~s~dg~~l~~~~~-~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~  251 (353)
T 3vgz_A          184 GKMSTGLALDSEGKRLYTTNA-DGELITIDTADNKILSRKKLLDDGKEHFFINISLDTARQRAFITDSK  251 (353)
T ss_dssp             CTTCCCCEEETTTTEEEEECT-TSEEEEEETTTTEEEEEEECCCSSSCCCEEEEEEETTTTEEEEEESS
T ss_pred             CCccceEEECCCCCEEEEEcC-CCeEEEEECCCCeEEEEEEcCCCCCCcccceEEECCCCCEEEEEeCC
Confidence            455889999999999999865 6889999876532211111111 1233566799999998 7887654

>3ott_A Two-component system sensor histidine kinase; beta-propeller, beta-sandwich, transcription; HET: TBR; 2.30A {Bacteroides thetaiotaomicron} PDB: 3va6_A

Probab=99.53  E-value=5.9e-13  Score=119.81  Aligned_cols=179  Identities=17%  Similarity=0.191  Sum_probs=117.8

Q ss_pred             cccEEEcCCCcEEEEeCCCcEEEEcc-CCceeEecccC-------CccccceEEccCCCEEEEEeCCCcEEEEe-cCC--
Q 026118           12 PEDVSVDGNGVLYTATGDGWIKRMHP-NGTWEDWHQVG-------SQSLLGLTTTKENNVIIVCDSQQGLLKVS-EEG--   80 (243)
Q Consensus        12 p~~i~~d~~g~l~~~~~~~~i~~~~~-~g~~~~~~~~~-------~~~~~~i~~~~~g~l~~v~~~~~gl~~~~-~~g--   80 (243)
                      ..+|+.|++|+||+++ .++|+++++ ++++..+....       .... +|..|++|++ |+++...||++++ .+.  
T Consensus       375 v~~i~~d~~g~lWigt-~~GL~~~~~~~~~~~~~~~~~~~~~~~~~~v~-~i~~d~~g~l-WigT~~~Gl~~~~~~~~~~  451 (758)
T 3ott_A          375 IRHIYEDKEQQLWIAT-DGSINRYDYATRQFIHYNIVDNTGTYNTNWTY-YIFEDTAGQL-WISTCLGGIFVVDKHKLMQ  451 (758)
T ss_dssp             EEEEEECTTSCEEEEE-TTEEEEEETTTTEEEEEEEECCC--CBSSSEE-EEEECTTSEE-EEEESSSCEEEEEHHHHHH
T ss_pred             eEEEEECCCCCEEEEe-CCcHhhcCcCCCcEEEeecCCCcCCCCCceEE-EEEEcCCCCE-EEEECCCceEEEccccccc
Confidence            4678899999999998 468999995 56666553211       1223 6788899998 9999878999998 321  


Q ss_pred             --cEEEE-----eccCCCcccCCccEEEcCCCcEEE--EeCCCCCCcccccccccccCCCceEEEEeCCCCeeEEeecc-
Q 026118           81 --VTVLV-----SQFNGSQLRFANDVIEASDGSLYF--TVSSTKFTPAEYYLDLVSGEPHGVLLKYDPSTNQTSLVLDG-  150 (243)
Q Consensus        81 --~~~~~-----~~~~~~~~~~~~~l~~d~~G~l~v--~~~~~~~~~~~~~~~~~~~~~~g~v~~~~~~~~~~~~~~~~-  150 (243)
                        ...+.     ....+.....+.+|+.|++|++|+  ++                   .++|+++++++++++.+... 
T Consensus       452 ~~~~~~~~~~~~~~~~~l~~~~i~~i~~d~~g~lWi~~~t-------------------~~Gl~~~d~~~~~~~~~~~~~  512 (758)
T 3ott_A          452 STSGQYIAEQNYSVHNGLSGMFINQIIPDNEGNVWVLLYN-------------------NKGIDKINPRTREVTKLFADE  512 (758)
T ss_dssp             CCSSEEECSEEECGGGTCSCSCEEEEEECTTSCEEEEETT-------------------CSSEEEEETTTTEEEEECTTT
T ss_pred             cCCcceecccccccccccccceeeeEEEcCCCCEEEEccC-------------------CCCcEEEeCCCCceEEecCCC
Confidence              01111     112222334577899999999999  53                   24799999998887775321 


Q ss_pred             ---ccccceEEEcCCCCEEEEEEcCCCeEEEEEeecCCCcceEEeccCC-CCCCCceEECCCCCEEEEEecC
Q 026118          151 ---LYFANGVALSEDERFLVVCESWKFRCVKHFLKVSGRTDREIFIDNL-PGGPDNVNLARDGSFWISIIKM  218 (243)
Q Consensus       151 ---~~~~~gi~~~~dg~~l~v~~~~~~~i~~~~~~~~~~~~~~~~~~~~-~~~~~~i~~d~~G~lwv~~~~~  218 (243)
                         ...++.+..+.+|+ ||++..  +.|.+|++....+.... . ... ...+.+|..+ +|+||+++..|
T Consensus       513 ~~~~~~~~~i~~d~~g~-lWigt~--~Gl~~~~~~~~~~~~~~-~-~gl~~~~i~~i~~~-~g~lWi~t~~G  578 (758)
T 3ott_A          513 LTGEKSPNYLLCDEDGL-LWVGFH--GGVMRINPKDESQQSIS-F-GSFSNNEILSMTCV-KNSIWVSTTNG  578 (758)
T ss_dssp             SCGGGCEEEEEECTTSC-EEEEET--TEEEEECC--CCCCBCC-C-CC---CCEEEEEEE-TTEEEEEESSC
T ss_pred             cCCCcccceEEECCCCC-EEEEec--CceEEEecCCCceEEec-c-cCCCccceEEEEEC-CCCEEEECCCC
Confidence               23456788899998 999963  57999998754433221 0 111 1123446555 78899988554

>2iwa_A Glutamine cyclotransferase; pyroglutamate, acyltransferase, glutaminyl CYCL N-terminal cyclisation; HET: NAG; 1.6A {Carica papaya} PDB: 2faw_A*

Probab=99.52  E-value=5e-12  Score=99.19  Aligned_cols=180  Identities=12%  Similarity=0.056  Sum_probs=113.9

Q ss_pred             cCCcccEEEcCCCcEEEEeC---CCcEEEEc-cCCceeEecccCCcccc-ceEEccCCCEEEEEeCCC-cEEEEe-cCCc
Q 026118            9 VNHPEDVSVDGNGVLYTATG---DGWIKRMH-PNGTWEDWHQVGSQSLL-GLTTTKENNVIIVCDSQQ-GLLKVS-EEGV   81 (243)
Q Consensus         9 ~~~p~~i~~d~~g~l~~~~~---~~~i~~~~-~~g~~~~~~~~~~~~~~-~i~~~~~g~l~~v~~~~~-gl~~~~-~~g~   81 (243)
                      -..|++|+++++|+||+++.   .+.|.++| .++++.........+.. +++++  |+.||++++.. .++.+| .+. 
T Consensus        20 ~~f~~Gl~~~~dg~Lyvstg~~~~s~v~~iD~~tg~v~~~i~l~~~~fgeGi~~~--g~~lyv~t~~~~~v~viD~~t~-   96 (266)
T 2iwa_A           20 YAFTQGLVYAENDTLFESTGLYGRSSVRQVALQTGKVENIHKMDDSYFGEGLTLL--NEKLYQVVWLKNIGFIYDRRTL-   96 (266)
T ss_dssp             TCCEEEEEECSTTEEEEEECSTTTCEEEEEETTTCCEEEEEECCTTCCEEEEEEE--TTEEEEEETTCSEEEEEETTTT-
T ss_pred             CCCcccEEEeCCCeEEEECCCCCCCEEEEEECCCCCEEEEEecCCCcceEEEEEe--CCEEEEEEecCCEEEEEECCCC-
Confidence            34678999999899999973   57899999 56776554332233330 55665  44449999765 477888 555 


Q ss_pred             EEEEeccCCCcccCCccEEEcCCC-cEEEEeCCCCCCcccccccccccCCCceEEEEeCCCCeeEEe-ecc-----cccc
Q 026118           82 TVLVSQFNGSQLRFANDVIEASDG-SLYFTVSSTKFTPAEYYLDLVSGEPHGVLLKYDPSTNQTSLV-LDG-----LYFA  154 (243)
Q Consensus        82 ~~~~~~~~~~~~~~~~~l~~d~~G-~l~v~~~~~~~~~~~~~~~~~~~~~~g~v~~~~~~~~~~~~~-~~~-----~~~~  154 (243)
                      +.+.....+    .+.+..+.+|| ++|+++.                  ++.|+.+|+++.+.... ..+     ...+
T Consensus        97 ~v~~~i~~g----~~~g~glt~Dg~~l~vs~g------------------s~~l~viD~~t~~v~~~I~Vg~~~~p~~~~  154 (266)
T 2iwa_A           97 SNIKNFTHQ----MKDGWGLATDGKILYGSDG------------------TSILYEIDPHTFKLIKKHNVKYNGHRVIRL  154 (266)
T ss_dssp             EEEEEEECC----SSSCCEEEECSSSEEEECS------------------SSEEEEECTTTCCEEEEEECEETTEECCCE
T ss_pred             cEEEEEECC----CCCeEEEEECCCEEEEECC------------------CCeEEEEECCCCcEEEEEEECCCCcccccc
Confidence            222221112    12233344454 6998852                  35899999998765443 211     2357


Q ss_pred             ceEEEcCCCCEEEEEEcCCCeEEEEEeecCCCcceEEecc----------CCCCCCCceEECCCCC-EEEEE
Q 026118          155 NGVALSEDERFLVVCESWKFRCVKHFLKVSGRTDREIFID----------NLPGGPDNVNLARDGS-FWISI  215 (243)
Q Consensus       155 ~gi~~~~dg~~l~v~~~~~~~i~~~~~~~~~~~~~~~~~~----------~~~~~~~~i~~d~~G~-lwv~~  215 (243)
                      +++++. +|+ ||+....++.|.++|+........-.+..          .....|.||+++++|+ +||+.
T Consensus       155 nele~~-dg~-lyvn~~~~~~V~vID~~tg~V~~~I~~~g~~~~~~~~~~~~~~v~nGIa~~~~~~~lfVTg  224 (266)
T 2iwa_A          155 NELEYI-NGE-VWANIWQTDCIARISAKDGTLLGWILLPNLRKKLIDEGFRDIDVLNGIAWDQENKRIFVTG  224 (266)
T ss_dssp             EEEEEE-TTE-EEEEETTSSEEEEEETTTCCEEEEEECHHHHHHHHHTTCTTCCCEEEEEEETTTTEEEEEE
T ss_pred             eeEEEE-CCE-EEEecCCCCeEEEEECCCCcEEEEEECCCcccccccccccccCceEEEEEcCCCCEEEEEC
Confidence            889988 775 99998888999999987643322111110          0112578999999886 78865

>3kya_A Putative phosphatase; structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PS hydrolase; HET: MSE; 1.77A {Bacteroides thetaiotaomicron}

Probab=99.52  E-value=2.3e-12  Score=109.36  Aligned_cols=184  Identities=12%  Similarity=0.133  Sum_probs=122.7

Q ss_pred             ccCCcccEEE-------cCCCc-EEEEeCCC-------cEEEEc--cCCcee------EecccCCccccceEEcc-CCCE
Q 026118            8 IVNHPEDVSV-------DGNGV-LYTATGDG-------WIKRMH--PNGTWE------DWHQVGSQSLLGLTTTK-ENNV   63 (243)
Q Consensus         8 ~~~~p~~i~~-------d~~g~-l~~~~~~~-------~i~~~~--~~g~~~------~~~~~~~~~~~~i~~~~-~g~l   63 (243)
                      .+.+|.+|++       |++|. ||+++..+       .|+.++  .+|.+.      .+. ....|. ++++++ ++.|
T Consensus       184 ~~~~p~~ia~~~~~~~~d~~G~~lyvad~~~~~~~~~~~V~~i~r~~~G~~~~~~~~~~v~-~~~~p~-giavdp~~g~L  261 (496)
T 3kya_A          184 PTNRIRSIAFNKKIEGYADEAEYMIVAIDYDGKGDESPSVYIIKRNADGTFDDRSDIQLIA-AYKQCN-GATIHPINGEL  261 (496)
T ss_dssp             SCSBEEEEEECCCBTTTBCTTCEEEEEECCCTTGGGEEEEEEEECCTTSCCSTTSCEEEEE-EESCCC-CEEECTTTCCE
T ss_pred             ccCCCcEEEEeecccccCCCCCEEEEEeCCCCCcccCceEEEEecCCCCceeecccceeec-cCCCce-EEEEcCCCCeE
Confidence            4668999999       99886 99998443       377885  334543      222 234678 999999 5566


Q ss_pred             EEEEeCCCc-EEEEe-c-------CC-c------------EEEEeccCCCcccCCccEEEcCCCc-EEEEeCCCCCCccc
Q 026118           64 IIVCDSQQG-LLKVS-E-------EG-V------------TVLVSQFNGSQLRFANDVIEASDGS-LYFTVSSTKFTPAE  120 (243)
Q Consensus        64 ~~v~~~~~g-l~~~~-~-------~g-~------------~~~~~~~~~~~~~~~~~l~~d~~G~-l~v~~~~~~~~~~~  120 (243)
                       |+++...+ |++++ .       ++ .            +.+...   .....+.+|+++++|+ +|+++..       
T Consensus       262 -Yvtd~~~g~V~r~d~~~~~~~~~tg~~~tp~~~~~~g~~~~l~~~---~~~~~p~~ia~~p~G~~lYvaD~~-------  330 (496)
T 3kya_A          262 -YFNSYEKGQVFRLDLVDYFKTIKNGGSWDPIVKNNPNTFKQLFTI---ADPSWEFQIFIHPTGKYAYFGVIN-------  330 (496)
T ss_dssp             -EEEETTTTEEEEECHHHHHHHHHTTCCCCCBGGGCTTTEEEEEEC---SSSSCCEEEEECTTSSEEEEEETT-------
T ss_pred             -EEEECCCCEEEEEecccccccccCceeecccccccccccceeEec---CCCCCceEEEEcCCCCEEEEEeCC-------
Confidence             99997765 99999 5       45 3            122211   1224578999999998 8999864       


Q ss_pred             ccccccccCCCceEEEEeCC--CCee---EEeec---------------cccccc-eEEEc-------CCCCEEEEEEcC
Q 026118          121 YYLDLVSGEPHGVLLKYDPS--TNQT---SLVLD---------------GLYFAN-GVALS-------EDERFLVVCESW  172 (243)
Q Consensus       121 ~~~~~~~~~~~g~v~~~~~~--~~~~---~~~~~---------------~~~~~~-gi~~~-------~dg~~l~v~~~~  172 (243)
                                ...|++++.+  ++.+   ..++.               .+..|. +++++       .+|+ |||++..
T Consensus       331 ----------~h~I~kid~dg~~~~~~~~~~~aG~~g~~G~~DG~~~~a~f~~P~~gv~vd~~~~~~~~~g~-lyVaD~~  399 (496)
T 3kya_A          331 ----------NHYFMRSDYDEIKKEFITPYNFVGGYKQSGYRDDVGTEARMNNPCQGVFVKNPDYTGEEEYD-FYFVDRL  399 (496)
T ss_dssp             ----------TTEEEEEEEETTTTEECCCEEEEEBTTBCCCBCCBGGGCBCSSEEEEEEEECTTCCSSCCEE-EEEEEGG
T ss_pred             ----------CCEEEEEecCCCcceecccEEecCCCCCCcccCCcccccccCCCeEEEEEccccccccCCCe-EEEEECC
Confidence                      3478886554  3332   22221               124577 77776       4566 9999999


Q ss_pred             CCeEEEEEeecCCCcceEEec-----------------cC------CCCCCCceEECCC-CCEEEEEecCC
Q 026118          173 KFRCVKHFLKVSGRTDREIFI-----------------DN------LPGGPDNVNLARD-GSFWISIIKMD  219 (243)
Q Consensus       173 ~~~i~~~~~~~~~~~~~~~~~-----------------~~------~~~~~~~i~~d~~-G~lwv~~~~~~  219 (243)
                      +++|.++++++ .   ...++                 ++      ....|.+|++|++ |+|||++..++
T Consensus       400 N~rIr~i~~~G-~---v~TiaG~g~~~~~~~~~~~G~~dG~~~~~a~f~~P~gIavd~~~g~lyVaD~~N~  466 (496)
T 3kya_A          400 NFCVRKVTPEG-I---VSTYAGRGASTSLADGNQWGTDDGDLREVARFRDVSGLVYDDVKEMFYVHDQVGH  466 (496)
T ss_dssp             GTEEEEECTTC-B---EEEEEESCTTHHHHHSCSCCCCCEETTTTCCCSSEEEEEEETTTTEEEEEETTTT
T ss_pred             CCEEEEEeCCC-C---EEEEecccccccccCccccccCCCCchhhhhcCCCcEEEEECCCCEEEEEeCCCC
Confidence            99999998544 1   11111                 01      1135889999996 99999987654

>3qqz_A Putative uncharacterized protein YJIK; MCSG, PSI-2, structural genomics, midwest center for structu genomics, TOLB-like, Ca binding; 2.55A {Escherichia coli}

Probab=99.52  E-value=9.6e-12  Score=97.05  Aligned_cols=191  Identities=14%  Similarity=0.138  Sum_probs=125.2

Q ss_pred             ccccCCcccEEEcCC-CcEEEEe-CCCcEEEEccCCceeEeccc--CCccccceEEccCCCEEEEEeCC-CcEEEEe-c-
Q 026118            6 EGIVNHPEDVSVDGN-GVLYTAT-GDGWIKRMHPNGTWEDWHQV--GSQSLLGLTTTKENNVIIVCDSQ-QGLLKVS-E-   78 (243)
Q Consensus         6 ~g~~~~p~~i~~d~~-g~l~~~~-~~~~i~~~~~~g~~~~~~~~--~~~~~~~i~~~~~g~l~~v~~~~-~gl~~~~-~-   78 (243)
                      .|...++.+|+++++ ++||+.. .++.|++++..+++..-...  ...+. +|++.++|.+ |++... +.++.++ . 
T Consensus        23 ~g~~~~lSGla~~~~~~~L~aV~d~~~~I~~ld~~g~v~~~i~l~g~~D~E-GIa~~~~g~~-~vs~E~~~~l~~~~v~~  100 (255)
T 3qqz_A           23 AGITNNISSLTWSAQSNTLFSTINKPAAIVEMTTNGDLIRTIPLDFVKDLE-TIEYIGDNQF-VISDERDYAIYVISLTP  100 (255)
T ss_dssp             TTCCSCEEEEEEETTTTEEEEEEETTEEEEEEETTCCEEEEEECSSCSSEE-EEEECSTTEE-EEEETTTTEEEEEEECT
T ss_pred             CCcccCcceeEEeCCCCEEEEEECCCCeEEEEeCCCCEEEEEecCCCCChH-HeEEeCCCEE-EEEECCCCcEEEEEcCC
Confidence            343468999999974 5799754 77889999977876554322  24567 9999988887 888654 4677776 3 


Q ss_pred             CC-cEEEEec-c---CCCcccCCccEEEcCCC-cEEEEeCCCCCCcccccccccccCCCceEEEEeC--CCCeeEEeec-
Q 026118           79 EG-VTVLVSQ-F---NGSQLRFANDVIEASDG-SLYFTVSSTKFTPAEYYLDLVSGEPHGVLLKYDP--STNQTSLVLD-  149 (243)
Q Consensus        79 ~g-~~~~~~~-~---~~~~~~~~~~l~~d~~G-~l~v~~~~~~~~~~~~~~~~~~~~~~g~v~~~~~--~~~~~~~~~~-  149 (243)
                      ++ ...+... .   .........+|++|+++ ++|++...                ....||.++.  .+..+..+.. 
T Consensus       101 ~~~i~~~~~~~~~~~~~~~N~g~EGLA~d~~~~~L~va~E~----------------~p~~i~~~~g~~~~~~l~i~~~~  164 (255)
T 3qqz_A          101 NSEVKILKKIKIPLQESPTNCGFEGLAYSRQDHTFWFFKEK----------------NPIEVYKVNGLLSSNELHISKDK  164 (255)
T ss_dssp             TCCEEEEEEEECCCSSCCCSSCCEEEEEETTTTEEEEEEES----------------SSEEEEEEESTTCSSCCEEEECH
T ss_pred             CCeeeeeeeeccccccccccCCcceEEEeCCCCEEEEEECc----------------CCceEEEEcccccCCceeeecch
Confidence            33 2222211 1   11223456899999976 79987422                1237888872  2222332211 


Q ss_pred             ------cccccceEEEcCCCCEEEEEEcCCCeEEEEEeecCCCcceEEeccCC------CCCCCceEECCCCCEEEEE
Q 026118          150 ------GLYFANGVALSEDERFLVVCESWKFRCVKHFLKVSGRTDREIFIDNL------PGGPDNVNLARDGSFWISI  215 (243)
Q Consensus       150 ------~~~~~~gi~~~~dg~~l~v~~~~~~~i~~~~~~~~~~~~~~~~~~~~------~~~~~~i~~d~~G~lwv~~  215 (243)
                            ....+.+++++|..+.+|+....++.|..+|.++..... ..+....      -..|.||++|++|+|||+.
T Consensus       165 ~~~~~~~~~d~S~l~~dp~tg~lliLS~~s~~L~~~d~~g~~~~~-~~L~~g~~~l~~~~~qpEGia~d~~G~lyIvs  241 (255)
T 3qqz_A          165 ALQRQFTLDDVSGAEFNQQKNTLLVLSHESRALQEVTLVGEVIGE-MSLTKGSRGLSHNIKQAEGVAMDASGNIYIVS  241 (255)
T ss_dssp             HHHHTCCSSCCCEEEEETTTTEEEEEETTTTEEEEECTTCCEEEE-EECSTTGGGCSSCCCSEEEEEECTTCCEEEEE
T ss_pred             hhccccccCCceeEEEcCCCCeEEEEECCCCeEEEEcCCCCEEEE-EEcCCccCCcccccCCCCeeEECCCCCEEEEc
Confidence                  133578999999888899999989999999977642221 1211111      1268999999999999984

>3p5b_L Low density lipoprotein receptor variant; B-propellor, convertase, hydrolase-lipid binding P complex; 3.30A {Homo sapiens} PDB: 3p5c_L

Probab=99.51  E-value=3.9e-12  Score=106.22  Aligned_cols=154  Identities=15%  Similarity=0.145  Sum_probs=112.7

Q ss_pred             cccccCCcccEEEcC-CCcEEEEe-CCCcEEEEccCCceeEe-c-ccCCccccceEEccCCCEEEEEeCC--CcEEEEec
Q 026118            5 GEGIVNHPEDVSVDG-NGVLYTAT-GDGWIKRMHPNGTWEDW-H-QVGSQSLLGLTTTKENNVIIVCDSQ--QGLLKVSE   78 (243)
Q Consensus         5 ~~g~~~~p~~i~~d~-~g~l~~~~-~~~~i~~~~~~g~~~~~-~-~~~~~~~~~i~~~~~g~l~~v~~~~--~gl~~~~~   78 (243)
                      ....+..|.+|++|. .++||+++ ..+.|.+++.+|+.... . .....|. +|++|+.+..||+++.+  ..|.+++.
T Consensus       154 ~~~~~~~p~glavD~~~~~lY~~d~~~~~I~~~~~~g~~~~~l~~~~~~~P~-~iavdp~~g~ly~td~~~~~~I~~~~~  232 (400)
T 3p5b_L          154 ISRDIQAPDGLAVDWIHSNIYWTDSVLGTVSVADTKGVKRKTLFRENGSKPR-AIVVDPVHGFMYWTDWGTPAKIKKGGL  232 (400)
T ss_dssp             ECSSCSCEEEEEEETTTTEEEEEETTTTEEEEECTTTCSEEEEEECSSCCEE-EEEEETTTTEEEEEECSSSCCEEEEET
T ss_pred             EeCCCCCcccEEEEecCCceEEEECCCCeEEEEeCCCCceEEEEeCCCCCcc-eEEEecccCeEEEEeCCCCCEEEEEeC
Confidence            333478899999997 78999998 67789999977764332 2 2335688 99999865544888864  46888885


Q ss_pred             CC--cEEEEeccCCCcccCCccEEEcC-CCcEEEEeCCCCCCcccccccccccCCCceEEEEeCCCCeeEEeec---ccc
Q 026118           79 EG--VTVLVSQFNGSQLRFANDVIEAS-DGSLYFTVSSTKFTPAEYYLDLVSGEPHGVLLKYDPSTNQTSLVLD---GLY  152 (243)
Q Consensus        79 ~g--~~~~~~~~~~~~~~~~~~l~~d~-~G~l~v~~~~~~~~~~~~~~~~~~~~~~g~v~~~~~~~~~~~~~~~---~~~  152 (243)
                      +|  .+.+..    .....|++|++|+ +++||++|..                 ...|++++.++...+.+..   ...
T Consensus       233 dG~~~~~~~~----~~l~~P~glavd~~~~~lY~aD~~-----------------~~~I~~~d~dG~~~~~~~~~~~~l~  291 (400)
T 3p5b_L          233 NGVDIYSLVT----ENIQWPNGITLDLLSGRLYWVDSK-----------------LHSISSIDVNGGNRKTILEDEKRLA  291 (400)
T ss_dssp             TSCSCEEEEC----SSCSCEEEEEEETTTTEEEEEETT-----------------TTEEEEEETTSCCCEEEEECSSTTS
T ss_pred             CCCccEEEEE----CCCCceEEEEEEeCCCEEEEEECC-----------------CCEEEEEeCCCCccEEEEeCCCCCC
Confidence            55  444432    1246789999996 5789999854                 3589999998655555543   357


Q ss_pred             ccceEEEcCCCCEEEEEEcCCCeEEEEEee
Q 026118          153 FANGVALSEDERFLVVCESWKFRCVKHFLK  182 (243)
Q Consensus       153 ~~~gi~~~~dg~~l~v~~~~~~~i~~~~~~  182 (243)
                      .|.+|+++  ++.|||++..+++|.+++..
T Consensus       292 ~P~gl~v~--~~~lywtd~~~~~V~~~~~~  319 (400)
T 3p5b_L          292 HPFSLAVF--EDKVFWTDIINEAIFSANRL  319 (400)
T ss_dssp             SEEEEEEE--TTEEEEEESSSCSEEEEESS
T ss_pred             CCEEEEEe--CCEEEEecCCCCeEEEEEcC
Confidence            78899984  34599999999999999854

>3u4y_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center for structural genomi CS, MCSG; 2.99A {Desulfotomaculum acetoxidans}

Probab=99.51  E-value=3.1e-12  Score=103.29  Aligned_cols=190  Identities=11%  Similarity=0.093  Sum_probs=123.5

Q ss_pred             CCccc-EEEcCCCc-EEEEeCC-C--cEEEEcc-CCceeEecccCCccccceEEccCCCEEEEEeCC-Cc-EEEEe--cC
Q 026118           10 NHPED-VSVDGNGV-LYTATGD-G--WIKRMHP-NGTWEDWHQVGSQSLLGLTTTKENNVIIVCDSQ-QG-LLKVS--EE   79 (243)
Q Consensus        10 ~~p~~-i~~d~~g~-l~~~~~~-~--~i~~~~~-~g~~~~~~~~~~~~~~~i~~~~~g~l~~v~~~~-~g-l~~~~--~~   79 (243)
                      ..|.. ++++++|. ||++... +  .|..++. .++..........+. +++++++|+.+|++... .. +..++  .+
T Consensus        83 ~~~~~~~~~s~dg~~l~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~-~~~~spdg~~l~~~~~~~~~~i~~~~~~~~  161 (331)
T 3u4y_A           83 QSSMADVDITPDDQFAVTVTGLNHPFNMQSYSFLKNKFISTIPIPYDAV-GIAISPNGNGLILIDRSSANTVRRFKIDAD  161 (331)
T ss_dssp             SSCCCCEEECTTSSEEEECCCSSSSCEEEEEETTTTEEEEEEECCTTEE-EEEECTTSSCEEEEEETTTTEEEEEEECTT
T ss_pred             CCCccceEECCCCCEEEEecCCCCcccEEEEECCCCCeEEEEECCCCcc-ceEECCCCCEEEEEecCCCceEEEEEECCC
Confidence            56778 99999986 5633333 2  7999984 455443333334567 99999999855887654 45 66666  34


Q ss_pred             C-cEEE-EeccCCCcccCCccEEEcCCCc-EEEEeCCCCCCcccccccccccCCCceEEEEeCCCCee---EEeeccccc
Q 026118           80 G-VTVL-VSQFNGSQLRFANDVIEASDGS-LYFTVSSTKFTPAEYYLDLVSGEPHGVLLKYDPSTNQT---SLVLDGLYF  153 (243)
Q Consensus        80 g-~~~~-~~~~~~~~~~~~~~l~~d~~G~-l~v~~~~~~~~~~~~~~~~~~~~~~g~v~~~~~~~~~~---~~~~~~~~~  153 (243)
                      + .... .....  ....+.+++++|+|+ +|++...                 .+.|+.+|.++++.   .........
T Consensus       162 g~~~~~~~~~~~--~~~~~~~~~~spdg~~l~v~~~~-----------------~~~v~v~d~~~~~~~~~~~~~~~~~~  222 (331)
T 3u4y_A          162 GVLFDTGQEFIS--GGTRPFNITFTPDGNFAFVANLI-----------------GNSIGILETQNPENITLLNAVGTNNL  222 (331)
T ss_dssp             CCEEEEEEEEEC--SSSSEEEEEECTTSSEEEEEETT-----------------TTEEEEEECSSTTSCEEEEEEECSSC
T ss_pred             CcEeecCCcccc--CCCCccceEECCCCCEEEEEeCC-----------------CCeEEEEECCCCcccceeeeccCCCC
Confidence            4 3221 11111  123578899999997 8887532                 35788999887775   333344467


Q ss_pred             cceEEEcCCCCEEEEEEcCCCeEEEEEeecCCCcceEEeccC--C-C---CCCCceEECCCCC-EEEEEecCC
Q 026118          154 ANGVALSEDERFLVVCESWKFRCVKHFLKVSGRTDREIFIDN--L-P---GGPDNVNLARDGS-FWISIIKMD  219 (243)
Q Consensus       154 ~~gi~~~~dg~~l~v~~~~~~~i~~~~~~~~~~~~~~~~~~~--~-~---~~~~~i~~d~~G~-lwv~~~~~~  219 (243)
                      +.+++++|||++||++....+.|..++...........+...  . +   .....++++++|+ ||++....+
T Consensus       223 ~~~~~~spdg~~l~v~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~v~~~~~~  295 (331)
T 3u4y_A          223 PGTIVVSRDGSTVYVLTESTVDVFNFNQLSGTLSFVKSFGHGLLIDPRPLFGANQMALNKTETKLFISANISR  295 (331)
T ss_dssp             CCCEEECTTSSEEEEECSSEEEEEEEETTTTEEEEEEEEECCCCCCCGGGTTCCCEEECTTSSEEEEEETTTT
T ss_pred             CceEEECCCCCEEEEEEcCCCEEEEEECCCCceeeecccccccccCCCCcccccceEECCCCCEEEEecCCCC
Confidence            889999999999999987778899998765433222222211  1 1   1124589999998 778765543

>3u4y_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center for structural genomi CS, MCSG; 2.99A {Desulfotomaculum acetoxidans}

Probab=99.50  E-value=1.9e-11  Score=98.60  Aligned_cols=182  Identities=12%  Similarity=0.040  Sum_probs=120.8

Q ss_pred             cCCcccEEEcCCCc-EEEEe-CCCcEEEEcc-CCce-eEecccCCccccc-eEEccCCCEEEEEeCCC----cEEEEe-c
Q 026118            9 VNHPEDVSVDGNGV-LYTAT-GDGWIKRMHP-NGTW-EDWHQVGSQSLLG-LTTTKENNVIIVCDSQQ----GLLKVS-E   78 (243)
Q Consensus         9 ~~~p~~i~~d~~g~-l~~~~-~~~~i~~~~~-~g~~-~~~~~~~~~~~~~-i~~~~~g~l~~v~~~~~----gl~~~~-~   78 (243)
                      ...| +++++++|. ||++. .++.|+.++. +++. .........+. . ++++++|++++ +....    .|..++ .
T Consensus        40 ~~~~-~~~~s~dg~~l~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~-~~~~~s~dg~~l~-~~~~~~~~~~i~v~d~~  116 (331)
T 3u4y_A           40 YDFV-DTAITSDCSNVVVTSDFCQTLVQIETQLEPPKVVAIQEGQSSM-ADVDITPDDQFAV-TVTGLNHPFNMQSYSFL  116 (331)
T ss_dssp             CCEE-EEEECSSSCEEEEEESTTCEEEEEECSSSSCEEEEEEECSSCC-CCEEECTTSSEEE-ECCCSSSSCEEEEEETT
T ss_pred             CCcc-eEEEcCCCCEEEEEeCCCCeEEEEECCCCceeEEecccCCCCc-cceEECCCCCEEE-EecCCCCcccEEEEECC
Confidence            3456 999999986 88887 4778999994 5554 33333345566 6 99999999856 44344    588888 5


Q ss_pred             CC-cEEEEeccCCCcccCCccEEEcCCCc-EEEEeCCCCCCcccccccccccCCC-ceEEEEeCCCCeeE----Eeeccc
Q 026118           79 EG-VTVLVSQFNGSQLRFANDVIEASDGS-LYFTVSSTKFTPAEYYLDLVSGEPH-GVLLKYDPSTNQTS----LVLDGL  151 (243)
Q Consensus        79 ~g-~~~~~~~~~~~~~~~~~~l~~d~~G~-l~v~~~~~~~~~~~~~~~~~~~~~~-g~v~~~~~~~~~~~----~~~~~~  151 (243)
                      ++ ......  .   ...+.+++++|+|+ +|+++..               ... -.+|.++.+ +.+.    ......
T Consensus       117 ~~~~~~~~~--~---~~~~~~~~~spdg~~l~~~~~~---------------~~~~i~~~~~~~~-g~~~~~~~~~~~~~  175 (331)
T 3u4y_A          117 KNKFISTIP--I---PYDAVGIAISPNGNGLILIDRS---------------SANTVRRFKIDAD-GVLFDTGQEFISGG  175 (331)
T ss_dssp             TTEEEEEEE--C---CTTEEEEEECTTSSCEEEEEET---------------TTTEEEEEEECTT-CCEEEEEEEEECSS
T ss_pred             CCCeEEEEE--C---CCCccceEECCCCCEEEEEecC---------------CCceEEEEEECCC-CcEeecCCccccCC
Confidence            55 322211  1   13467899999996 7877532               011 235556544 3331    122334


Q ss_pred             cccceEEEcCCCCEEEEEEcCCCeEEEEEeecCCC-cceEEeccCCCCCCCceEECCCCC-EEEEEe
Q 026118          152 YFANGVALSEDERFLVVCESWKFRCVKHFLKVSGR-TDREIFIDNLPGGPDNVNLARDGS-FWISII  216 (243)
Q Consensus       152 ~~~~gi~~~~dg~~l~v~~~~~~~i~~~~~~~~~~-~~~~~~~~~~~~~~~~i~~d~~G~-lwv~~~  216 (243)
                      ..|.+++++|+|+++|++...++.|..|++..... .....+.  ....|.+++++++|+ ||++..
T Consensus       176 ~~~~~~~~spdg~~l~v~~~~~~~v~v~d~~~~~~~~~~~~~~--~~~~~~~~~~spdg~~l~v~~~  240 (331)
T 3u4y_A          176 TRPFNITFTPDGNFAFVANLIGNSIGILETQNPENITLLNAVG--TNNLPGTIVVSRDGSTVYVLTE  240 (331)
T ss_dssp             SSEEEEEECTTSSEEEEEETTTTEEEEEECSSTTSCEEEEEEE--CSSCCCCEEECTTSSEEEEECS
T ss_pred             CCccceEECCCCCEEEEEeCCCCeEEEEECCCCcccceeeecc--CCCCCceEEECCCCCEEEEEEc
Confidence            56889999999999999988889999999875433 1122332  235688999999999 777654

>2p4o_A Hypothetical protein; putative lactonase, structural genomics, joint center for ST genomics, JCSG, protein structure initiative, PSI-2; HET: MSE; 1.90A {Nostoc punctiforme} SCOP: b.68.6.3

Probab=99.49  E-value=4.9e-12  Score=101.78  Aligned_cols=185  Identities=14%  Similarity=0.100  Sum_probs=120.3

Q ss_pred             CCcccEEEcCCCcEEEEeC-C--CcEEEEc-cCCceeEeccc--CCccccceEEccCCCEEEEEeC-CCcEEEEe-cCC-
Q 026118           10 NHPEDVSVDGNGVLYTATG-D--GWIKRMH-PNGTWEDWHQV--GSQSLLGLTTTKENNVIIVCDS-QQGLLKVS-EEG-   80 (243)
Q Consensus        10 ~~p~~i~~d~~g~l~~~~~-~--~~i~~~~-~~g~~~~~~~~--~~~~~~~i~~~~~g~l~~v~~~-~~gl~~~~-~~g-   80 (243)
                      ..|.+|+++++|+||+++. .  ..|++++ .++++..+...  ...+. +++..+++.+ |+++. ...|++++ ..+ 
T Consensus        72 ~~p~gia~~~dG~l~vad~~~~~~~v~~~d~~~g~~~~~~~~~~~~~~~-g~~~~~~~~~-~v~d~~~g~i~~~d~~~~~  149 (306)
T 2p4o_A           72 GKVSGLAFTSNGDLVATGWNADSIPVVSLVKSDGTVETLLTLPDAIFLN-GITPLSDTQY-LTADSYRGAIWLIDVVQPS  149 (306)
T ss_dssp             SEEEEEEECTTSCEEEEEECTTSCEEEEEECTTSCEEEEEECTTCSCEE-EEEESSSSEE-EEEETTTTEEEEEETTTTE
T ss_pred             CCceeEEEcCCCcEEEEeccCCcceEEEEcCCCCeEEEEEeCCCccccC-cccccCCCcE-EEEECCCCeEEEEeCCCCc
Confidence            3689999999999999983 2  2588887 67776654321  22345 7777666666 88885 45689998 443 


Q ss_pred             cEEEEec------cCCCcccCCccEEEcCCC-cEEEEeCCCCCCcccccccccccCCCceEEEEeCCC-CeeE--Eeecc
Q 026118           81 VTVLVSQ------FNGSQLRFANDVIEASDG-SLYFTVSSTKFTPAEYYLDLVSGEPHGVLLKYDPST-NQTS--LVLDG  150 (243)
Q Consensus        81 ~~~~~~~------~~~~~~~~~~~l~~d~~G-~l~v~~~~~~~~~~~~~~~~~~~~~~g~v~~~~~~~-~~~~--~~~~~  150 (243)
                      .+.....      ........+++|  +++| .+|+++..                 .+.|++++.+. +++.  .....
T Consensus       150 ~~v~~~~~~~~~~~~~~~~~~pngi--s~dg~~lyv~d~~-----------------~~~I~~~~~~~~g~~~~~~~~~~  210 (306)
T 2p4o_A          150 GSIWLEHPMLARSNSESVFPAANGL--KRFGNFLYVSNTE-----------------KMLLLRIPVDSTDKPGEPEIFVE  210 (306)
T ss_dssp             EEEEEECGGGSCSSTTCCSCSEEEE--EEETTEEEEEETT-----------------TTEEEEEEBCTTSCBCCCEEEEE
T ss_pred             EeEEEECCccccccccCCCCcCCCc--CcCCCEEEEEeCC-----------------CCEEEEEEeCCCCCCCccEEEec
Confidence            2322111      111123567887  6665 69999754                 35899998764 3321  11222


Q ss_pred             ccccceEEEcCCCCEEEEEEcCCCeEEEEEeecCCCcceEEeccCCCCCCCceEEC---CCC-CEEEEEecC
Q 026118          151 LYFANGVALSEDERFLVVCESWKFRCVKHFLKVSGRTDREIFIDNLPGGPDNVNLA---RDG-SFWISIIKM  218 (243)
Q Consensus       151 ~~~~~gi~~~~dg~~l~v~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~i~~d---~~G-~lwv~~~~~  218 (243)
                      ...|.+|+++++|+ ||+++..+++|.+|++++. +.....+ ......|.+++++   +++ .|||++..+
T Consensus       211 ~~~P~gi~vd~dG~-l~va~~~~~~V~~~~~~G~-~~~~~~~-~~~~~~p~~~a~~g~~~d~~~LyVt~~~~  279 (306)
T 2p4o_A          211 QTNIDDFAFDVEGN-LYGATHIYNSVVRIAPDRS-TTIIAQA-EQGVIGSTAVAFGQTEGDCTAIYVVTNGG  279 (306)
T ss_dssp             SCCCSSEEEBTTCC-EEEECBTTCCEEEECTTCC-EEEEECG-GGTCTTEEEEEECCSTTTTTEEEEEECTT
T ss_pred             cCCCCCeEECCCCC-EEEEeCCCCeEEEECCCCC-EEEEeec-ccccCCceEEEEecccCCCCEEEEECCCC
Confidence            35799999999998 9999988899999986531 1111111 1122468999998   675 599998754

>3a9g_A Putative uncharacterized protein; PQQ dependent dehydrogenase, aldose sugar dehydrogenase, BET propeller fold, oxidoreductase; HET: TRE; 2.39A {Pyrobaculum aerophilum} PDB: 3a9h_A*

Probab=99.49  E-value=8.9e-12  Score=102.38  Aligned_cols=187  Identities=12%  Similarity=0.069  Sum_probs=120.9

Q ss_pred             cCCcccEEEcCC----CcEEEEeC----C----CcEEEEccCCc---e---eEe----ccc-CCccccceEEccCCCEEE
Q 026118            9 VNHPEDVSVDGN----GVLYTATG----D----GWIKRMHPNGT---W---EDW----HQV-GSQSLLGLTTTKENNVII   65 (243)
Q Consensus         9 ~~~p~~i~~d~~----g~l~~~~~----~----~~i~~~~~~g~---~---~~~----~~~-~~~~~~~i~~~~~g~l~~   65 (243)
                      ...|.+|+++++    |.||++..    +    .+|.+++.++.   +   +.+    ... ...+. +|++++||+| |
T Consensus        72 ~~g~~gia~~pdf~~~g~lyv~~~~~~~~~~~~~~v~r~~~~~~~~~~~~~~~l~~~~~~~~~h~~~-~l~~~pDG~L-y  149 (354)
T 3a9g_A           72 EAGLLGLALHPEFPKKSWVYLYASYFAEGGHIRNRVIRGRLDGSTFKLKEVKTLIDGIPGAYIHNGG-RIRFGPDGML-Y  149 (354)
T ss_dssp             TCSEEEEEECTTTTTSCEEEEEEEEECGGGCEEEEEEEEEECSSSCCEEEEEEEEEEEECCSSCCCC-CEEECTTSCE-E
T ss_pred             CCceeeEEeCCCCCcCCEEEEEEeccCCCCCcceEEEEEEECCCCcCcCccEEEEEcCCCCCCcCCc-eEEECCCCcE-E
Confidence            457999999986    89999874    2    67999984332   2   111    111 11344 7999999998 9


Q ss_pred             EEeCC--------------CcEEEEecCC-c---------EEEEeccCCCcccCCccEEEcC-CCcEEEEeCCCCCCccc
Q 026118           66 VCDSQ--------------QGLLKVSEEG-V---------TVLVSQFNGSQLRFANDVIEAS-DGSLYFTVSSTKFTPAE  120 (243)
Q Consensus        66 v~~~~--------------~gl~~~~~~g-~---------~~~~~~~~~~~~~~~~~l~~d~-~G~l~v~~~~~~~~~~~  120 (243)
                      ++...              ..|++++++| .         +.+.     ..++.|++|++|+ +|+||+++.+...    
T Consensus       150 vt~G~~~~~~~~~d~~~~~G~I~ri~~dG~~p~~npf~~~~i~a-----~G~rnp~Gla~d~~~g~l~v~d~g~~~----  220 (354)
T 3a9g_A          150 ITTGDAADPRLAQDLSSLAGKILRVDEEGRPPADNPFPNSPIWS-----YGHRNPQGIDWHRASGVMVATEHGPVG----  220 (354)
T ss_dssp             EECCCTTCGGGGTCTTCCSSEEEEECTTSCCCTTSSSTTCCEEE-----ECCSCCCEEEECTTTCCEEEEECCSSS----
T ss_pred             EEECCCCCCccccCCCCCCeEEEEEcCCCCCCCCCCCCCCcEEE-----EccCCcceEEEeCCCCCEEEEecCCCC----
Confidence            98632              2588888555 2         1111     1246789999999 7999999865211    


Q ss_pred             ccccccccCCCceEEEEeCCC--------------CeeEEe--e-ccccccceEEEc-------CCCCEEEEEEcCCCeE
Q 026118          121 YYLDLVSGEPHGVLLKYDPST--------------NQTSLV--L-DGLYFANGVALS-------EDERFLVVCESWKFRC  176 (243)
Q Consensus       121 ~~~~~~~~~~~g~v~~~~~~~--------------~~~~~~--~-~~~~~~~gi~~~-------~dg~~l~v~~~~~~~i  176 (243)
                                ...|.++.+..              +...++  . .....|.|+++.       .+|+ +|+++...++|
T Consensus       221 ----------~dei~~i~~G~nyGwp~~~g~~~~~~~~~p~~~~~~~~~ap~G~~~y~g~~fp~~~G~-l~v~~~~~~~v  289 (354)
T 3a9g_A          221 ----------HDEVNIILKGGNYGWPLATGKAGRGEFVDPVIDTGSETWAPSGASFVHGDMFPGLRGW-LLIACLRGSML  289 (354)
T ss_dssp             ----------CCEEEEECTTCBCCTTTCCSCCCCTTSCCCSEECTTCCCCEEEEEECCSSSCGGGTTE-EEEEETTTTEE
T ss_pred             ----------CcEEEEecCCCcCCCCcccCCCCCCCCcCCEeecCCCCcCCcceEEECCCCCcccCCc-EEEEEcCCCEE
Confidence                      11344443321              001111  1 223468899993       5675 99999988999


Q ss_pred             EEEEeecC-CCcceEEeccCCCCCCCceEECCCCCEEEEEec
Q 026118          177 VKHFLKVS-GRTDREIFIDNLPGGPDNVNLARDGSFWISIIK  217 (243)
Q Consensus       177 ~~~~~~~~-~~~~~~~~~~~~~~~~~~i~~d~~G~lwv~~~~  217 (243)
                      +++++++. .....+.+.....++|.++++++||.|||+++.
T Consensus       290 ~~~~~~~~g~~~~~~~~~~~~~~rp~~v~~~pDG~lyv~~~~  331 (354)
T 3a9g_A          290 AAVNFGDNMEVRKISTFFKNVFGRLRDVVIDDDGGILISTSN  331 (354)
T ss_dssp             EEEEECGGGCEEEEEEECTTTSCCEEEEEECTTSCEEEEECT
T ss_pred             EEEEECCCCcccceeeeccCCCCCeeEEEECCCCcEEEEEeC
Confidence            99999753 232233443333567999999999999999974

>3m0c_C LDL receptor, low-density lipoprotein receptor; protein complex, beta propeller, cholesterol clearance, PCSK autocatalytic cleavage; 7.01A {Homo sapiens}

Probab=99.46  E-value=7.4e-12  Score=112.51  Aligned_cols=175  Identities=13%  Similarity=0.108  Sum_probs=118.6

Q ss_pred             cCCCcEEEEeCCCcEEEEccC-CceeEecccCCccccceEEccCCCEEEEEeCCC-cEEEEecCC------cEEEEeccC
Q 026118           18 DGNGVLYTATGDGWIKRMHPN-GTWEDWHQVGSQSLLGLTTTKENNVIIVCDSQQ-GLLKVSEEG------VTVLVSQFN   89 (243)
Q Consensus        18 d~~g~l~~~~~~~~i~~~~~~-g~~~~~~~~~~~~~~~i~~~~~g~l~~v~~~~~-gl~~~~~~g------~~~~~~~~~   89 (243)
                      +....|+++. ...|++++.+ ..+..+......+. +|+++.....||+++... .|++++.++      ...+..   
T Consensus       393 ~~~p~Ll~an-~~~Ir~i~l~~~~~~~l~~~~~~~~-gl~~d~~~~~lY~sD~~~~~I~~~~l~g~~~~~~~~~vi~---  467 (791)
T 3m0c_C          393 GSIAYLFFTN-RHEVRKMTLDRSEYTSLIPNLRNVV-ALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVIS---  467 (791)
T ss_dssp             TSCCEEEEEC-BSSEEEECTTSCCCEEEECSCSSEE-EEEEETTTTEEEEEETTTTEEEEEEC--------CEEEEC---
T ss_pred             cccccccccc-ccceeEeeccCCcceeeecCCCceE-EEeecccCCeeEEeeccceeEEEEeccCCCCCcceeEEEe---
Confidence            3334566664 3568888843 34444444446677 999997444448888654 477887333      122221   


Q ss_pred             CCcccCCccEEEcCC-CcEEEEeCCCCCCcccccccccccCCCceEEEEeCCCCeeEEee-ccccccceEEEcCCCCEEE
Q 026118           90 GSQLRFANDVIEASD-GSLYFTVSSTKFTPAEYYLDLVSGEPHGVLLKYDPSTNQTSLVL-DGLYFANGVALSEDERFLV  167 (243)
Q Consensus        90 ~~~~~~~~~l~~d~~-G~l~v~~~~~~~~~~~~~~~~~~~~~~g~v~~~~~~~~~~~~~~-~~~~~~~gi~~~~dg~~l~  167 (243)
                       .....|.+|++|.. ++||+++..                 .+.|.++++++...+.+. ..+..|++|++++.+.+||
T Consensus       468 -~~l~~P~GLAvD~~~~~LY~tD~~-----------------~~~I~v~~ldG~~~~~l~~~~l~~P~gIaVDp~~g~LY  529 (791)
T 3m0c_C          468 -RDIQAPDGLAVDWIHSNIYWTDSV-----------------LGTVSVADTKGVKRKTLFRENGSKPRAIVVDPVHGFMY  529 (791)
T ss_dssp             -SSCSCCCEEEEETTTTEEEEEETT-----------------TTEEEEEETTSSSEEEEEECTTCCEEEEEEETTTTEEE
T ss_pred             -cCCCCcceeeeeecCCcEEEEecC-----------------CCeEEEEeCCCCeEEEEEeCCCCCcceEEEecCCCCEE
Confidence             13467889999985 489999864                 358999999865555544 4567899999999877799


Q ss_pred             EEEcCC-CeEEEEEeecCCCcceEEeccCCCCCCCceEEC-CCCCEEEEEecC
Q 026118          168 VCESWK-FRCVKHFLKVSGRTDREIFIDNLPGGPDNVNLA-RDGSFWISIIKM  218 (243)
Q Consensus       168 v~~~~~-~~i~~~~~~~~~~~~~~~~~~~~~~~~~~i~~d-~~G~lwv~~~~~  218 (243)
                      |++... ..|.++++++.   ....+.......|.+|++| ..++||+++...
T Consensus       530 wtD~g~~~~I~~~~~dG~---~~~~lv~~~l~~P~GLavD~~~~~LYwaD~~~  579 (791)
T 3m0c_C          530 WTDWGTPAKIKKGGLNGV---DIYSLVTENIQWPNGITLDLLSGRLYWVDSKL  579 (791)
T ss_dssp             EEECSSSCEEEEEETTSC---CEEEEECSSCSCEEEEEEETTTTEEEEEETTT
T ss_pred             EecCCCCCeEEEEecCCC---ceEEEEeCCCCCceEEEEecCCCeEEEEeCCC
Confidence            999765 78999998763   2333433334579999999 567899997554

>3hxj_A Pyrrolo-quinoline quinone; all beta protein. incomplete 8-blade beta-propeller., struct genomics, PSI-2, protein structure initiative; 2.00A {Methanococcus maripaludis}

Probab=99.46  E-value=1.7e-11  Score=98.93  Aligned_cols=176  Identities=13%  Similarity=0.143  Sum_probs=115.8

Q ss_pred             EEEcCCCcEEEEeCCCcEEEEccCCceeEecccCCccccceEEccCCCEEEEEeCCCcEEEEecCC-cEEEEeccCCCcc
Q 026118           15 VSVDGNGVLYTATGDGWIKRMHPNGTWEDWHQVGSQSLLGLTTTKENNVIIVCDSQQGLLKVSEEG-VTVLVSQFNGSQL   93 (243)
Q Consensus        15 i~~d~~g~l~~~~~~~~i~~~~~~g~~~~~~~~~~~~~~~i~~~~~g~l~~v~~~~~gl~~~~~~g-~~~~~~~~~~~~~   93 (243)
                      .+++ +|.||+++.+++|+++++.++..............+.++++|++ |+++...+|+.++..| ...... ..   .
T Consensus       103 ~~~~-~~~l~v~t~~~~l~~~d~~g~~~~~~~~~~~~~~~~~~~~~g~l-~vgt~~~~l~~~d~~g~~~~~~~-~~---~  176 (330)
T 3hxj_A          103 FTIF-EDILYVTSMDGHLYAINTDGTEKWRFKTKKAIYATPIVSEDGTI-YVGSNDNYLYAINPDGTEKWRFK-TN---D  176 (330)
T ss_dssp             EEEE-TTEEEEECTTSEEEEECTTSCEEEEEECSSCCCSCCEECTTSCE-EEECTTSEEEEECTTSCEEEEEE-CS---S
T ss_pred             ceEE-CCEEEEEecCCEEEEEcCCCCEEEEEcCCCceeeeeEEcCCCEE-EEEcCCCEEEEECCCCCEeEEEe-cC---C
Confidence            3444 88999999889999999666543222211222226788889998 9998778999999447 332222 11   2


Q ss_pred             cCCccEEEcCCCcEEEEeCCCCCCcccccccccccCCCceEEEEeCCCCeeE-EeeccccccceEEEcCCCCEEEEEEcC
Q 026118           94 RFANDVIEASDGSLYFTVSSTKFTPAEYYLDLVSGEPHGVLLKYDPSTNQTS-LVLDGLYFANGVALSEDERFLVVCESW  172 (243)
Q Consensus        94 ~~~~~l~~d~~G~l~v~~~~~~~~~~~~~~~~~~~~~~g~v~~~~~~~~~~~-~~~~~~~~~~gi~~~~dg~~l~v~~~~  172 (243)
                      .....++++++|++|+++                    ++|++++++ ++.. ..........+++++++|+ ||++.. 
T Consensus       177 ~~~~~~~~d~~g~l~v~t--------------------~~l~~~d~~-g~~~~~~~~~~~~~~~~~~~~~g~-l~v~t~-  233 (330)
T 3hxj_A          177 AITSAASIGKDGTIYFGS--------------------DKVYAINPD-GTEKWNFYAGYWTVTRPAISEDGT-IYVTSL-  233 (330)
T ss_dssp             CCCSCCEECTTCCEEEES--------------------SSEEEECTT-SCEEEEECCSSCCCSCCEECTTSC-EEEEET-
T ss_pred             CceeeeEEcCCCEEEEEe--------------------CEEEEECCC-CcEEEEEccCCcceeceEECCCCe-EEEEcC-
Confidence            345567889999999983                    479999954 5433 3332334567789999988 999864 


Q ss_pred             CCeEEEEEeecCCCcceEEeccCCCCCCCceEECCCCCEEEEEecCCchhh
Q 026118          173 KFRCVKHFLKVSGRTDREIFIDNLPGGPDNVNLARDGSFWISIIKMDPKGI  223 (243)
Q Consensus       173 ~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~i~~d~~G~lwv~~~~~~~~~~  223 (243)
                      ++.|++++.++..   ...+. .....+..+++|++|+||+++..++...+
T Consensus       234 ~~gl~~~~~~g~~---~~~~~-~~~~~~~~~~~~~~g~l~v~t~~ggl~~~  280 (330)
T 3hxj_A          234 DGHLYAINPDGTE---KWRFK-TGKRIESSPVIGNTDTIYFGSYDGHLYAI  280 (330)
T ss_dssp             TTEEEEECTTSCE---EEEEE-CSSCCCSCCEECTTSCEEEECTTCEEEEE
T ss_pred             CCeEEEECCCCCE---eEEee-CCCCccccceEcCCCeEEEecCCCCEEEE
Confidence            5789999754321   11221 22334566888999999999877554333

>1cru_A Protein (soluble quinoprotein glucose dehydrogena; beta-propeller, superbarrel; HET: PQQ; 1.50A {Acinetobacter calcoaceticus} SCOP: b.68.2.1 PDB: 1c9u_A* 1cq1_A* 1qbi_A

Probab=99.45  E-value=5.6e-12  Score=106.83  Aligned_cols=169  Identities=13%  Similarity=0.179  Sum_probs=110.3

Q ss_pred             ceecccccCCcccEEEcCCCcEEEEeCCC-cEEEEcc-CCceeEeccc---------CCccccceEEcc----CCCEEEE
Q 026118            2 IKLGEGIVNHPEDVSVDGNGVLYTATGDG-WIKRMHP-NGTWEDWHQV---------GSQSLLGLTTTK----ENNVIIV   66 (243)
Q Consensus         2 ~~~~~g~~~~p~~i~~d~~g~l~~~~~~~-~i~~~~~-~g~~~~~~~~---------~~~~~~~i~~~~----~g~l~~v   66 (243)
                      ++++++ +..|.+|+++++|+||+++..+ +|++++. +++...+...         ...++ +|+++|    ++.+ |+
T Consensus        20 ~~~a~~-l~~P~~~a~~pdG~l~V~e~~gg~I~~~~~~~g~~~~~~~~~~~~~~~~g~~Gll-gia~~Pdf~~~g~l-Yv   96 (454)
T 1cru_A           20 KVILSN-LNKPHALLWGPDNQIWLTERATGKILRVNPESGSVKTVFQVPEIVNDADGQNGLL-GFAFHPDFKNNPYI-YI   96 (454)
T ss_dssp             EEEECC-CSSEEEEEECTTSCEEEEETTTCEEEEECTTTCCEEEEEECTTCCCCTTSSCSEE-EEEECTTTTTSCEE-EE
T ss_pred             EEEECC-CCCceEEEEcCCCcEEEEEcCCCEEEEEECCCCcEeEEecCCccccccCCCCcee-EEEECCCcCcCCEE-EE
Confidence            456666 8899999999999999999665 6999984 5665443211         12345 899998    4555 98


Q ss_pred             EeCC-------------CcEEEEe-cC--C-c---EEEEeccCCCcccCCccEEEcCCCcEEEEeCCCCCCccc--c-c-
Q 026118           67 CDSQ-------------QGLLKVS-EE--G-V---TVLVSQFNGSQLRFANDVIEASDGSLYFTVSSTKFTPAE--Y-Y-  122 (243)
Q Consensus        67 ~~~~-------------~gl~~~~-~~--g-~---~~~~~~~~~~~~~~~~~l~~d~~G~l~v~~~~~~~~~~~--~-~-  122 (243)
                      +...             ..|++++ ..  + .   +.+.............+|++++||.||++.-........  + . 
T Consensus        97 ~~s~~~~~~~~~~~~~~~~v~r~~~~~~~~~~~~~~~i~~~~p~~~~H~~~~l~f~pDG~Lyv~~Gd~~~~~~~~~~~~~  176 (454)
T 1cru_A           97 SGTFKNPKSTDKELPNQTIIRRYTYNKSTDTLEKPVDLLAGLPSSKDHQSGRLVIGPDQKIYYTIGDQGRNQLAYLFLPN  176 (454)
T ss_dssp             EEEEECTTC--CCSCEEEEEEEEEEETTTTEEEEEEEEEEEECCCSSCCEEEEEECTTSCEEEEECCTTTTSGGGTTSCC
T ss_pred             EEeccccCCCccccccccEEEEEEECCCCCCcCCcEEEEEcCCCCCCCCCCeEeECCCCeEEEEECCCCCCCcccccccc
Confidence            8742             3688887 32  2 2   233332222233567899999999999986432110000  0 0 


Q ss_pred             -----------ccccccCCCceEEEEeCCCC-----------eeEEeeccccccceEEEcCCCCEEEEEEcCCC
Q 026118          123 -----------LDLVSGEPHGVLLKYDPSTN-----------QTSLVLDGLYFANGVALSEDERFLVVCESWKF  174 (243)
Q Consensus       123 -----------~~~~~~~~~g~v~~~~~~~~-----------~~~~~~~~~~~~~gi~~~~dg~~l~v~~~~~~  174 (243)
                                 .........++|+|+++++.           ..+.+..+...|.+|+|+++|+ ||+++....
T Consensus       177 ~~~~~p~~~~~~aq~~~~~~G~IlRi~~dG~ip~~Npf~~~~~~ei~a~G~RNp~gla~dp~G~-L~~~d~g~~  249 (454)
T 1cru_A          177 QAQHTPTQQELNGKDYHTYMGKVLRLNLDGSIPKDNPSFNGVVSHIYTLGHRNPQGLAFTPNGK-LLQSEQGPN  249 (454)
T ss_dssp             CTTCCCCHHHHHTTCCTTCSSEEEEECTTSCCCTTCCEETTEECSEEEBCCSEEEEEEECTTSC-EEEEEECSS
T ss_pred             ccccccccccccccCCCCCCeeEEEEeCCCCCCCCCCCCCCCcceEEEECCCCcceEEECCCCC-EEEEecCCC
Confidence                       00011224689999999854           3455667778899999999887 999986543

>1jof_A Carboxy-CIS,CIS-muconate cyclase; beta-propeller, homotetramer, seMet-protein, isomerase; HET: PIN; 2.50A {Neurospora crassa} SCOP: b.69.10.1

Probab=99.45  E-value=2.8e-11  Score=99.54  Aligned_cols=191  Identities=13%  Similarity=0.020  Sum_probs=117.9

Q ss_pred             cCCcccEEEcCCCc-EEEEeCCCcEEEEc-c-CCceeEecc--cCCccccceEEccCCCE--EEEEe-------------
Q 026118            9 VNHPEDVSVDGNGV-LYTATGDGWIKRMH-P-NGTWEDWHQ--VGSQSLLGLTTTKENNV--IIVCD-------------   68 (243)
Q Consensus         9 ~~~p~~i~~d~~g~-l~~~~~~~~i~~~~-~-~g~~~~~~~--~~~~~~~~i~~~~~g~l--~~v~~-------------   68 (243)
                      ...|..++++++|. ||+++.+ .|..++ . +++......  ..+.+. .++++++|+.  +++++             
T Consensus        39 ~~~~~~~a~spdg~~l~~~~~~-~v~~~~~~~~g~~~~~~~~~~~g~~~-~~~~spdg~~l~~~~~~~~~~~~~~~~~~~  116 (365)
T 1jof_A           39 DEPISWMTFDHERKNIYGAAMK-KWSSFAVKSPTEIVHEASHPIGGHPR-ANDADTNTRAIFLLAAKQPPYAVYANPFYK  116 (365)
T ss_dssp             TCCCSEEEECTTSSEEEEEEBT-EEEEEEEEETTEEEEEEEEECCSSGG-GGCTTSCCEEEEEEECSSTTCCEEEEEESS
T ss_pred             CCCCcEEEECCCCCEEEEEccc-eEEEEEECCCCCEEEeeEeecCCCCc-cEEECCCCCEEEEEEecCCcceeccceeec
Confidence            35789999999996 8887765 788777 2 676543221  113467 8999999993  24443             


Q ss_pred             CCCcEEEEe--cCC-cEEEEeccCCCcccCCccEEEcCCCc-EEEEeCCCCCCcccccccccccCCCceEEEEeCC-CCe
Q 026118           69 SQQGLLKVS--EEG-VTVLVSQFNGSQLRFANDVIEASDGS-LYFTVSSTKFTPAEYYLDLVSGEPHGVLLKYDPS-TNQ  143 (243)
Q Consensus        69 ~~~gl~~~~--~~g-~~~~~~~~~~~~~~~~~~l~~d~~G~-l~v~~~~~~~~~~~~~~~~~~~~~~g~v~~~~~~-~~~  143 (243)
                      ..+.+..++  .+| ...............+.+++++|||+ +|+++.+                 .+.|+.++.+ +++
T Consensus       117 ~~g~v~v~~~~~~g~~~~~~~~~~~~~~~~~~~~~~spdG~~l~~~~~~-----------------~~~v~~~~~~~~g~  179 (365)
T 1jof_A          117 FAGYGNVFSVSETGKLEKNVQNYEYQENTGIHGMVFDPTETYLYSADLT-----------------ANKLWTHRKLASGE  179 (365)
T ss_dssp             SCCEEEEEEECTTCCEEEEEEEEECCTTCCEEEEEECTTSSEEEEEETT-----------------TTEEEEEEECTTSC
T ss_pred             CCceEEEEccCCCCcCcceEeeEEeCCCCcceEEEECCCCCEEEEEcCC-----------------CCEEEEEEECCCCC
Confidence            233355555  345 32211111111124677899999997 6666532                 2467777766 676


Q ss_pred             eEEee--c---cccccceEEEcCCCCEEEEEEcCCCeEEEEEeec--CCCcc-eEEeccCC---CC---------CCCce
Q 026118          144 TSLVL--D---GLYFANGVALSEDERFLVVCESWKFRCVKHFLKV--SGRTD-REIFIDNL---PG---------GPDNV  203 (243)
Q Consensus       144 ~~~~~--~---~~~~~~gi~~~~dg~~l~v~~~~~~~i~~~~~~~--~~~~~-~~~~~~~~---~~---------~~~~i  203 (243)
                      ++.+.  .   ....|.+++|+|||++||++...++.|..|+.+.  +.+.. .+.+....   .+         .+.++
T Consensus       180 ~~~~~~~~~~~~g~~p~~~~~spdg~~l~v~~~~~~~v~v~~~~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i  259 (365)
T 1jof_A          180 VELVGSVDAPDPGDHPRWVAMHPTGNYLYALMEAGNRICEYVIDPATHMPVYTHHSFPLIPPGIPDRDPETGKGLYRADV  259 (365)
T ss_dssp             EEEEEEEECSSTTCCEEEEEECTTSSEEEEEETTTTEEEEEEECTTTCCEEEEEEEEESSCTTCCCBCTTTSSBSEEEEE
T ss_pred             EEEeeeEecCCCCCCCCEeEECCCCCEEEEEECCCCeEEEEEEeCCCCcEEEccceEEcCCCCcCCcccccccccccccE
Confidence            65431  1   1356889999999999999987778888887763  22211 11121111   11         36789


Q ss_pred             E-ECCCCC-EEEEEecC
Q 026118          204 N-LARDGS-FWISIIKM  218 (243)
Q Consensus       204 ~-~d~~G~-lwv~~~~~  218 (243)
                      + ++++|+ ||++....
T Consensus       260 ~~~spdG~~l~v~~~~~  276 (365)
T 1jof_A          260 CALTFSGKYMFASSRAN  276 (365)
T ss_dssp             EEECTTSSEEEEEEEES
T ss_pred             EEECCCCCEEEEECCCC
Confidence            9 999997 78776544

>3no2_A Uncharacterized protein; six-bladed beta-propeller, structural genomics, joint center structural genomics, JCSG, protein structure initiative; HET: MSE CIT PEG; 1.35A {Bacteroides caccae}

Probab=99.44  E-value=7.1e-11  Score=93.68  Aligned_cols=187  Identities=10%  Similarity=-0.008  Sum_probs=125.2

Q ss_pred             CCcccEEEcCCCcEEEEeCCCcEEEEccCCceeEecccC--CccccceEEccCCCEEEEEeCC--CcEEEEecCC--cEE
Q 026118           10 NHPEDVSVDGNGVLYTATGDGWIKRMHPNGTWEDWHQVG--SQSLLGLTTTKENNVIIVCDSQ--QGLLKVSEEG--VTV   83 (243)
Q Consensus        10 ~~p~~i~~d~~g~l~~~~~~~~i~~~~~~g~~~~~~~~~--~~~~~~i~~~~~g~l~~v~~~~--~gl~~~~~~g--~~~   83 (243)
                      ..+.+++++++|+++++ .+++|+.++++|+...-....  .... ++.+.++|++ +++...  ..++.++++|  ...
T Consensus        37 ~~~~~~~~~pdG~ilvs-~~~~V~~~d~~G~~~W~~~~~~~~~~~-~~~~~~dG~~-lv~~~~~~~~v~~vd~~Gk~l~~  113 (276)
T 3no2_A           37 WECNSVAATKAGEILFS-YSKGAKMITRDGRELWNIAAPAGCEMQ-TARILPDGNA-LVAWCGHPSTILEVNMKGEVLSK  113 (276)
T ss_dssp             CCCCEEEECTTSCEEEE-CBSEEEEECTTSCEEEEEECCTTCEEE-EEEECTTSCE-EEEEESTTEEEEEECTTSCEEEE
T ss_pred             CCCcCeEECCCCCEEEe-CCCCEEEECCCCCEEEEEcCCCCcccc-ccEECCCCCE-EEEecCCCCEEEEEeCCCCEEEE
Confidence            35788999999999994 567899999887754332221  1233 6778899999 666543  4578888767  223


Q ss_pred             EEeccC-CCcccCCccEEEcCCCcEEEEeCCCCCCcccccccccccCCCceEEEEeCCCCeeEEeeccccccceEEEcCC
Q 026118           84 LVSQFN-GSQLRFANDVIEASDGSLYFTVSSTKFTPAEYYLDLVSGEPHGVLLKYDPSTNQTSLVLDGLYFANGVALSED  162 (243)
Q Consensus        84 ~~~~~~-~~~~~~~~~l~~d~~G~l~v~~~~~~~~~~~~~~~~~~~~~~g~v~~~~~~~~~~~~~~~~~~~~~gi~~~~d  162 (243)
                      +..... ...+..+..+.++++|++++++..                 .+.|+.+|++ |+...-......|.++.+.++
T Consensus       114 ~~~~~~~~~~~~~~~~v~~~~~G~~lv~~~~-----------------~~~v~~~d~~-G~~~w~~~~~~~~~~~~~~~~  175 (276)
T 3no2_A          114 TEFETGIERPHAQFRQINKNKKGNYLVPLFA-----------------TSEVREIAPN-GQLLNSVKLSGTPFSSAFLDN  175 (276)
T ss_dssp             EEECCSCSSGGGSCSCCEECTTSCEEEEETT-----------------TTEEEEECTT-SCEEEEEECSSCCCEEEECTT
T ss_pred             EeccCCCCcccccccCceECCCCCEEEEecC-----------------CCEEEEECCC-CCEEEEEECCCCccceeEcCC
Confidence            322111 112335667788999999998643                 4689999998 665544433356778888899


Q ss_pred             CCEEEEEEcCCCeEEEEEeecCCCcceEEeccCC----CCCCCceEECCCCCEEEEEecCC
Q 026118          163 ERFLVVCESWKFRCVKHFLKVSGRTDREIFIDNL----PGGPDNVNLARDGSFWISIIKMD  219 (243)
Q Consensus       163 g~~l~v~~~~~~~i~~~~~~~~~~~~~~~~~~~~----~~~~~~i~~d~~G~lwv~~~~~~  219 (243)
                      |+ ++++...+++|..++++++..-.... ....    ...|.+++..++|++||+..+++
T Consensus       176 g~-~~v~~~~~~~v~~~d~~tG~~~w~~~-~~~~~~~~l~~~~~~~~~~~G~i~v~~~~g~  234 (276)
T 3no2_A          176 GD-CLVACGDAHCFVQLNLESNRIVRRVN-ANDIEGVQLFFVAQLFPLQNGGLYICNWQGH  234 (276)
T ss_dssp             SC-EEEECBTTSEEEEECTTTCCEEEEEE-GGGSBSCCCSEEEEEEECTTSCEEEEEECTT
T ss_pred             CC-EEEEeCCCCeEEEEeCcCCcEEEEec-CCCCCCccccccccceEcCCCCEEEEeccCc
Confidence            99 77777777889999987432211111 1111    12478899999999999997653

>2iwa_A Glutamine cyclotransferase; pyroglutamate, acyltransferase, glutaminyl CYCL N-terminal cyclisation; HET: NAG; 1.6A {Carica papaya} PDB: 2faw_A*

Probab=99.43  E-value=2.4e-11  Score=95.36  Aligned_cols=154  Identities=10%  Similarity=0.065  Sum_probs=106.8

Q ss_pred             cCCcccEEEcCCCcEEEEe-CCCcEEEEcc-CCceeEecccCCccccceEEccCCCEEEEEeCCCcEEEEe-cCC--cEE
Q 026118            9 VNHPEDVSVDGNGVLYTAT-GDGWIKRMHP-NGTWEDWHQVGSQSLLGLTTTKENNVIIVCDSQQGLLKVS-EEG--VTV   83 (243)
Q Consensus         9 ~~~p~~i~~d~~g~l~~~~-~~~~i~~~~~-~g~~~~~~~~~~~~~~~i~~~~~g~l~~v~~~~~gl~~~~-~~g--~~~   83 (243)
                      ...+++++++. ++||+++ .++.++.+|. +.++..-.... .+. ++.+.+||+.+|+++..+.|..+| .+.  ...
T Consensus        65 ~~fgeGi~~~g-~~lyv~t~~~~~v~viD~~t~~v~~~i~~g-~~~-g~glt~Dg~~l~vs~gs~~l~viD~~t~~v~~~  141 (266)
T 2iwa_A           65 SYFGEGLTLLN-EKLYQVVWLKNIGFIYDRRTLSNIKNFTHQ-MKD-GWGLATDGKILYGSDGTSILYEIDPHTFKLIKK  141 (266)
T ss_dssp             TCCEEEEEEET-TEEEEEETTCSEEEEEETTTTEEEEEEECC-SSS-CCEEEECSSSEEEECSSSEEEEECTTTCCEEEE
T ss_pred             CcceEEEEEeC-CEEEEEEecCCEEEEEECCCCcEEEEEECC-CCC-eEEEEECCCEEEEECCCCeEEEEECCCCcEEEE
Confidence            34567788874 5899998 6788999994 45443322222 244 555556666559998656788999 444  333


Q ss_pred             EEeccCCCcccCCccEEEcCCCcEEEEeCCCCCCcccccccccccCCCceEEEEeCCCCeeEEeec--cc----------
Q 026118           84 LVSQFNGSQLRFANDVIEASDGSLYFTVSSTKFTPAEYYLDLVSGEPHGVLLKYDPSTNQTSLVLD--GL----------  151 (243)
Q Consensus        84 ~~~~~~~~~~~~~~~l~~d~~G~l~v~~~~~~~~~~~~~~~~~~~~~~g~v~~~~~~~~~~~~~~~--~~----------  151 (243)
                      +.....+.+...++.+.+. +|.+|+....                 .+.|.++|++++++.....  +.          
T Consensus       142 I~Vg~~~~p~~~~nele~~-dg~lyvn~~~-----------------~~~V~vID~~tg~V~~~I~~~g~~~~~~~~~~~  203 (266)
T 2iwa_A          142 HNVKYNGHRVIRLNELEYI-NGEVWANIWQ-----------------TDCIARISAKDGTLLGWILLPNLRKKLIDEGFR  203 (266)
T ss_dssp             EECEETTEECCCEEEEEEE-TTEEEEEETT-----------------SSEEEEEETTTCCEEEEEECHHHHHHHHHTTCT
T ss_pred             EEECCCCcccccceeEEEE-CCEEEEecCC-----------------CCeEEEEECCCCcEEEEEECCCccccccccccc
Confidence            3322223344567888877 7899988532                 4589999999998754332  11          


Q ss_pred             --cccceEEEcCCCCEEEEEEcCCCeEEEEEeec
Q 026118          152 --YFANGVALSEDERFLVVCESWKFRCVKHFLKV  183 (243)
Q Consensus       152 --~~~~gi~~~~dg~~l~v~~~~~~~i~~~~~~~  183 (243)
                        ..++||+++++++.+||+....+.|+.+++..
T Consensus       204 ~~~v~nGIa~~~~~~~lfVTgk~~~~v~~i~l~~  237 (266)
T 2iwa_A          204 DIDVLNGIAWDQENKRIFVTGKLWPKLFEIKLHL  237 (266)
T ss_dssp             TCCCEEEEEEETTTTEEEEEETTCSEEEEEEEEE
T ss_pred             ccCceEEEEEcCCCCEEEEECCCCCeEEEEEEec
Confidence              36799999999999999998889999999864

>1ri6_A Putative isomerase YBHE; 7-bladed propeller, enzyme, PSI, protein structure initiative, NEW YORK SGX research center for structural genomics; 2.00A {Escherichia coli} SCOP: b.69.11.1

Probab=99.43  E-value=6.8e-11  Score=95.40  Aligned_cols=187  Identities=12%  Similarity=0.124  Sum_probs=117.8

Q ss_pred             CcccEEEcCCCc-EEEEe-CCCcEEEEcc-CCc---eeEecccCCccccceEEccCCCEEEEEe-CCCcEEEEe-cC-C-
Q 026118           11 HPEDVSVDGNGV-LYTAT-GDGWIKRMHP-NGT---WEDWHQVGSQSLLGLTTTKENNVIIVCD-SQQGLLKVS-EE-G-   80 (243)
Q Consensus        11 ~p~~i~~d~~g~-l~~~~-~~~~i~~~~~-~g~---~~~~~~~~~~~~~~i~~~~~g~l~~v~~-~~~gl~~~~-~~-g-   80 (243)
                      .|.+++++++|. ||++. .++.|..++. ++.   ..........+. +++++++|+.+|++. ....+..++ .+ + 
T Consensus        85 ~~~~~~~s~dg~~l~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~-~~~~s~dg~~l~~~~~~~~~v~~~d~~~~~~  163 (343)
T 1ri6_A           85 SLTHISTDHQGQFVFVGSYNAGNVSVTRLEDGLPVGVVDVVEGLDGCH-SANISPDNRTLWVPALKQDRICLFTVSDDGH  163 (343)
T ss_dssp             CCSEEEECTTSSEEEEEETTTTEEEEEEEETTEEEEEEEEECCCTTBC-CCEECTTSSEEEEEEGGGTEEEEEEECTTSC
T ss_pred             CCcEEEEcCCCCEEEEEecCCCeEEEEECCCCccccccccccCCCCce-EEEECCCCCEEEEecCCCCEEEEEEecCCCc
Confidence            788999999886 77777 4667888874 332   111112223456 899999998768887 445677888 54 6 


Q ss_pred             cEEEEe-ccCCCcccCCccEEEcCCCc-EEEEeCCCCCCcccccccccccCCCceEEEEeC--CCCeeEEee--c----c
Q 026118           81 VTVLVS-QFNGSQLRFANDVIEASDGS-LYFTVSSTKFTPAEYYLDLVSGEPHGVLLKYDP--STNQTSLVL--D----G  150 (243)
Q Consensus        81 ~~~~~~-~~~~~~~~~~~~l~~d~~G~-l~v~~~~~~~~~~~~~~~~~~~~~~g~v~~~~~--~~~~~~~~~--~----~  150 (243)
                      ...... .........+.+++++|+|+ +|++...                 .+.|..++.  .+++++...  .    .
T Consensus       164 ~~~~~~~~~~~~~~~~~~~~~~~pdg~~l~~~~~~-----------------~~~i~~~~~~~~~g~~~~~~~~~~~~~~  226 (343)
T 1ri6_A          164 LVAQDPAEVTTVEGAGPRHMVFHPNEQYAYCVNEL-----------------NSSVDVWELKDPHGNIECVQTLDMMPEN  226 (343)
T ss_dssp             EEEEEEEEEECSTTCCEEEEEECTTSSEEEEEETT-----------------TTEEEEEESSCTTSCCEEEEEEECSCTT
T ss_pred             eeeecccccccCCCCCcceEEECCCCCEEEEEeCC-----------------CCEEEEEEecCCCCcEEEEeeccccCcc
Confidence            433220 11111123567899999997 6776432                 345666666  345443221  1    1


Q ss_pred             ---ccccceEEEcCCCCEEEEEEcCCCeEEEEEeec--CCCcceEEeccCCCCCCCceEECCCCC-EEEEEec
Q 026118          151 ---LYFANGVALSEDERFLVVCESWKFRCVKHFLKV--SGRTDREIFIDNLPGGPDNVNLARDGS-FWISIIK  217 (243)
Q Consensus       151 ---~~~~~gi~~~~dg~~l~v~~~~~~~i~~~~~~~--~~~~~~~~~~~~~~~~~~~i~~d~~G~-lwv~~~~  217 (243)
                         ...+.+++++++|++||++...++.|..|+++.  +.......+.  ..+.|.+++++++|+ ||++...
T Consensus       227 ~~~~~~~~~i~~s~dg~~l~v~~~~~~~i~v~d~~~~~~~~~~~~~~~--~~~~~~~~~~s~dg~~l~~~~~~  297 (343)
T 1ri6_A          227 FSDTRWAADIHITPDGRHLYACDRTASLITVFSVSEDGSVLSKEGFQP--TETQPRGFNVDHSGKYLIAAGQK  297 (343)
T ss_dssp             CCSCCCEEEEEECTTSSEEEEEETTTTEEEEEEECTTSCCEEEEEEEE--CSSSCCCEEECTTSSEEEEECTT
T ss_pred             ccccCCccceEECCCCCEEEEEecCCCEEEEEEEcCCCCceEEeeeec--CCCccceEEECCCCCEEEEecCC
Confidence               124557999999999999987788999999873  2222222222  223488999999998 6766533

>3ott_A Two-component system sensor histidine kinase; beta-propeller, beta-sandwich, transcription; HET: TBR; 2.30A {Bacteroides thetaiotaomicron} PDB: 3va6_A

Probab=99.41  E-value=8.1e-12  Score=112.42  Aligned_cols=178  Identities=14%  Similarity=0.118  Sum_probs=113.3

Q ss_pred             cccEEEcCCCcEEEEeCCCcEEEEcc-CCceeEecccCCccccceEEccCCCEEEEEeCCCcEEEEe-cCC-cEEEEecc
Q 026118           12 PEDVSVDGNGVLYTATGDGWIKRMHP-NGTWEDWHQVGSQSLLGLTTTKENNVIIVCDSQQGLLKVS-EEG-VTVLVSQF   88 (243)
Q Consensus        12 p~~i~~d~~g~l~~~~~~~~i~~~~~-~g~~~~~~~~~~~~~~~i~~~~~g~l~~v~~~~~gl~~~~-~~g-~~~~~~~~   88 (243)
                      -.+|+.|.+|.||+++. .+++++++ ..++.............+. +.+|++ |+++.. ||++++ .++ +..+....
T Consensus        65 i~~i~~d~~g~lWigT~-~Gl~~yd~~~~~f~~~~~~~~~~i~~i~-~~~g~l-Wigt~~-Gl~~~~~~~~~~~~~~~~~  140 (758)
T 3ott_A           65 IYCGVIIDNTYLYMGTD-NGILVYNYRADRYEQPETDFPTDVRTMA-LQGDTL-WLGALN-GLYTYQLQSRKLTSFDTRR  140 (758)
T ss_dssp             EEEEEEETTTEEEEEET-TEEEEEETTTTEECCCSCCCCSCEEEEE-EETTEE-EEEETT-EEEEEETTTCCEEEECHHH
T ss_pred             EEEEEEcCCCcEEEEeC-CCeEEEeCCCCEEECcccCCCceEEEEE-ecCCcE-EEEcCC-cceeEeCCCCeEEEeccCC
Confidence            34678899999999986 46999984 3333321110011121343 457887 999864 999999 555 55442211


Q ss_pred             CCCcccCCccEEEcCCCcEEEEeCCCCCCcccccccccccCCCceEEEEeCCCCeeEEeeccc------cccceEEEcCC
Q 026118           89 NGSQLRFANDVIEASDGSLYFTVSSTKFTPAEYYLDLVSGEPHGVLLKYDPSTNQTSLVLDGL------YFANGVALSED  162 (243)
Q Consensus        89 ~~~~~~~~~~l~~d~~G~l~v~~~~~~~~~~~~~~~~~~~~~~g~v~~~~~~~~~~~~~~~~~------~~~~gi~~~~d  162 (243)
                      ...+...+.+++.|.+|++|+++.                   ++|+++++.+++++.+....      .....|..+++
T Consensus       141 ~~l~~~~i~~i~~d~~g~lWigt~-------------------~Gl~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~d~~  201 (758)
T 3ott_A          141 NGLPNNTIYSIIRTKDNQIYVGTY-------------------NGLCRYIPSNGKFEGIPLPVHSSQSNLFVNSLLEDTT  201 (758)
T ss_dssp             HCCSCSCEEEEEECTTCCEEEEET-------------------TEEEEEETTTTEEEEECCCCCTTCSSCCEEEEEEETT
T ss_pred             CCcCCCeEEEEEEcCCCCEEEEeC-------------------CCHhhCccCCCceEEecCCCccccccceeEEEEEECC
Confidence            222334567888999999999853                   37999999877766542211      12456778877


Q ss_pred             CCEEEEEEcCCCeEEEEEeecCCCcceEEeccCCCCCCCceEECCCCCEEEEEec
Q 026118          163 ERFLVVCESWKFRCVKHFLKVSGRTDREIFIDNLPGGPDNVNLARDGSFWISIIK  217 (243)
Q Consensus       163 g~~l~v~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~i~~d~~G~lwv~~~~  217 (243)
                      ++.||++..  +.|++|++....+.....+   .......|+.|++|+|||++..
T Consensus       202 ~~~lWigt~--~Gl~~~~~~~~~~~~~~~l---~~~~i~~i~~d~~g~lWigT~~  251 (758)
T 3ott_A          202 RQCVWIGTE--GYLFQYFPSTGQIKQTEAF---HNNSIKSLALDGNGDLLAGTDN  251 (758)
T ss_dssp             TTEEEEEEE--EEEEEEETTTTEEEEEEEE---EEEEEEEEEECTTCCEEEEETT
T ss_pred             CCEEEEEEC--CCCeEEcCCCCeEEeccCC---CCCeEEEEEEcCCCCEEEEeCC
Confidence            777899863  4799998654322221111   1123456889999999999943

>3scy_A Hypothetical bacterial 6-phosphogluconolactonase; 7-bladed beta-propeller, structural genomics, joint center F structural genomics, JCSG; HET: MSE; 1.50A {Bacteroides fragilis} PDB: 3fgb_A

Probab=99.40  E-value=1.2e-10  Score=95.21  Aligned_cols=188  Identities=13%  Similarity=0.105  Sum_probs=115.7

Q ss_pred             CCcccEEEcCCCcEEEEe-CCCcEEEEc--cCCceeEec----cc----------CCccccceEEccCCCEEEEEeCCC-
Q 026118           10 NHPEDVSVDGNGVLYTAT-GDGWIKRMH--PNGTWEDWH----QV----------GSQSLLGLTTTKENNVIIVCDSQQ-   71 (243)
Q Consensus        10 ~~p~~i~~d~~g~l~~~~-~~~~i~~~~--~~g~~~~~~----~~----------~~~~~~~i~~~~~g~l~~v~~~~~-   71 (243)
                      ..|..+++ ....||++. .++.|..++  .++.+....    ..          ...+. +++++++|+.+|++.... 
T Consensus       100 ~~p~~~~~-dg~~l~~~~~~~~~v~~~~~~~~g~~~~~~~~~~~~g~~~~~~~~~~~~~~-~~~~spdg~~l~~~~~~~~  177 (361)
T 3scy_A          100 ADPCYLTT-NGKNIVTANYSGGSITVFPIGQDGALLPASDVIEFKGSGPDKERQTMPHLH-CVRITPDGKYLLADDLGTD  177 (361)
T ss_dssp             SCEEEEEE-CSSEEEEEETTTTEEEEEEBCTTSCBCSCSEEEECCCCCSCTTTCSSCCEE-EEEECTTSSEEEEEETTTT
T ss_pred             CCcEEEEE-CCCEEEEEECCCCEEEEEEeCCCCcCcccceeEEccCCCCCccccCCCcce-EEEECCCCCEEEEEeCCCC
Confidence            46888888 333588887 566777777  344332211    00          11224 799999999658887643 


Q ss_pred             cEEEEe-c--CC------cEEE--EeccCCCcccCCccEEEcCCCc-EEEEeCCCCCCcccccccccccCCCceEEEEeC
Q 026118           72 GLLKVS-E--EG------VTVL--VSQFNGSQLRFANDVIEASDGS-LYFTVSSTKFTPAEYYLDLVSGEPHGVLLKYDP  139 (243)
Q Consensus        72 gl~~~~-~--~g------~~~~--~~~~~~~~~~~~~~l~~d~~G~-l~v~~~~~~~~~~~~~~~~~~~~~~g~v~~~~~  139 (243)
                      .+..++ .  .+      ....  ...........+.+++++|+|+ +|+++..                 .+.|..++.
T Consensus       178 ~v~v~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~spdg~~l~v~~~~-----------------~~~v~v~~~  240 (361)
T 3scy_A          178 QIHKFNINPNANADNKEKFLTKGTPEAFKVAPGSGPRHLIFNSDGKFAYLINEI-----------------GGTVIAFRY  240 (361)
T ss_dssp             EEEEEEECTTCCTTTCCCCEEEEEEEEEECCTTCCEEEEEECTTSSEEEEEETT-----------------TCEEEEEEE
T ss_pred             EEEEEEEcCCCCcccccceeecccccceecCCCCCCeEEEEcCCCCEEEEEcCC-----------------CCeEEEEEe
Confidence            455554 2  22      2111  0011111234577899999997 7776532                 346777776


Q ss_pred             CCCeeEEeec------cccccceEEEcCCCCEEEEEEcC-CCeEEEEEeec--CCCcceEEeccCCCCCCCceEECCCCC
Q 026118          140 STNQTSLVLD------GLYFANGVALSEDERFLVVCESW-KFRCVKHFLKV--SGRTDREIFIDNLPGGPDNVNLARDGS  210 (243)
Q Consensus       140 ~~~~~~~~~~------~~~~~~gi~~~~dg~~l~v~~~~-~~~i~~~~~~~--~~~~~~~~~~~~~~~~~~~i~~d~~G~  210 (243)
                      ++++++.+..      ....+.+++++|||++||+++.. .+.|..|+++.  +.+.....+. . ...|.+++++++|+
T Consensus       241 ~~g~~~~~~~~~~~~~~~~~~~~i~~spdg~~l~v~~~~~~~~i~v~~~~~~~g~~~~~~~~~-~-g~~~~~~~~spdg~  318 (361)
T 3scy_A          241 ADGMLDEIQTVAADTVNAQGSGDIHLSPDGKYLYASNRLKADGVAIFKVDETNGTLTKVGYQL-T-GIHPRNFIITPNGK  318 (361)
T ss_dssp             ETTEEEEEEEEESCSSCCCCEEEEEECTTSSEEEEEECSSSCEEEEEEECTTTCCEEEEEEEE-C-SSCCCEEEECTTSC
T ss_pred             cCCceEEeEEEecCCCCCCCcccEEECCCCCEEEEECCCCCCEEEEEEEcCCCCcEEEeeEec-C-CCCCceEEECCCCC
Confidence            6676654321      12346799999999999999887 78899988862  2222222222 2 34689999999998


Q ss_pred             -EEEEEecC
Q 026118          211 -FWISIIKM  218 (243)
Q Consensus       211 -lwv~~~~~  218 (243)
                       ||++....
T Consensus       319 ~l~~~~~~~  327 (361)
T 3scy_A          319 YLLVACRDT  327 (361)
T ss_dssp             EEEEEETTT
T ss_pred             EEEEEECCC
Confidence             77776443

>1n7d_A LDL receptor, low-density lipoprotein receptor; familial hypercholesterolemia, cholestero metabolism, lipid transport; HET: NAG BMA MAN KEG; 3.70A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1 g.3.11.1 g.3.11.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 PDB: 2lgp_A 1xfe_A 1f5y_A 1ldl_A 1ldr_A 1d2j_A 1f8z_A

Probab=99.38  E-value=9.7e-12  Score=110.79  Aligned_cols=151  Identities=16%  Similarity=0.167  Sum_probs=107.6

Q ss_pred             ccCCcccEEEc-CCCcEEEEe-CCCcEEEEccCCceeE-ecc-cCCccccceEEccCCCEEEEEeCC--CcEEEEecCC-
Q 026118            8 IVNHPEDVSVD-GNGVLYTAT-GDGWIKRMHPNGTWED-WHQ-VGSQSLLGLTTTKENNVIIVCDSQ--QGLLKVSEEG-   80 (243)
Q Consensus         8 ~~~~p~~i~~d-~~g~l~~~~-~~~~i~~~~~~g~~~~-~~~-~~~~~~~~i~~~~~g~l~~v~~~~--~gl~~~~~~g-   80 (243)
                      .+..|.+|++| ..++||+++ ..++|.+++.++.... +.. ....|. +|++++++..||+++..  ..|++++.+| 
T Consensus       451 ~~~~P~glavD~~~g~LY~tD~~~~~I~v~d~dg~~~~~l~~~~~~~P~-giavDp~~g~ly~td~~~~~~I~~~~~dG~  529 (699)
T 1n7d_A          451 DIQAPDGLAVDWIHSNIYWTDSVLGTVSVADTKGVKRKTLFREQGSKPR-AIVVDPVHGFMYWTDWGTPAKIKKGGLNGV  529 (699)
T ss_dssp             CC--CCCEECCCSSSBCEECCTTTSCEEEEBSSSCCEEEECCCSSCCCC-CEECCSSSSCCEECCCSSSCCEEBCCSSSC
T ss_pred             CCCCcceEEEEeeCCcEEEEeccCCeEEEEecCCCceEEEEeCCCCCcc-eEEEccCCCcEEEcccCCCCeEEEEeCCCC
Confidence            36689999999 477999997 5688999997765433 322 235678 99999864444888754  4688887555 


Q ss_pred             -cEEEEeccCCCcccCCccEEEcCC-CcEEEEeCCCCCCcccccccccccCCCceEEEEeCCCCeeEEeec---cccccc
Q 026118           81 -VTVLVSQFNGSQLRFANDVIEASD-GSLYFTVSSTKFTPAEYYLDLVSGEPHGVLLKYDPSTNQTSLVLD---GLYFAN  155 (243)
Q Consensus        81 -~~~~~~~~~~~~~~~~~~l~~d~~-G~l~v~~~~~~~~~~~~~~~~~~~~~~g~v~~~~~~~~~~~~~~~---~~~~~~  155 (243)
                       .+.+..    .....|++|++|++ ++||+++..                 ...|++++.++...+.+..   ....|.
T Consensus       530 ~~~~l~~----~~l~~PnGlavd~~~~~LY~aD~~-----------------~~~I~~~d~dG~~~~~~~~~~~~~~~P~  588 (699)
T 1n7d_A          530 DIYSLVT----ENIQWPNGITLDLLSGRLYWVDSK-----------------LHSISSIDVNGGNRKTILEDEKRLAHPF  588 (699)
T ss_dssp             CCCEESC----SSCSSCCCEEECTTTCCEEEEETT-----------------TTEEEEECSSSSCCEEECCCSSSCSSCC
T ss_pred             CeeEEEe----CCCCCccEEEEeccCCEEEEEecC-----------------CCeEEEEccCCCceEEEEecCCcCCCce
Confidence             333321    12467999999985 789999754                 3589999998655555442   356789


Q ss_pred             eEEEcCCCCEEEEEEcCCCeEEEEEee
Q 026118          156 GVALSEDERFLVVCESWKFRCVKHFLK  182 (243)
Q Consensus       156 gi~~~~dg~~l~v~~~~~~~i~~~~~~  182 (243)
                      +|+++.+  .|||++..+++|.+++..
T Consensus       589 glavd~~--~lywtd~~~~~V~~~d~~  613 (699)
T 1n7d_A          589 SLAVFED--KVFWTDIINEAIFSANRL  613 (699)
T ss_dssp             CCEEETT--EEEEECSTTTCEEEEETT
T ss_pred             EeEEECC--EEEEEeCCCCeEEEEEcc
Confidence            9998754  599999888999999864

>1l0q_A Surface layer protein; SLP, S-layer, 7-bladed beta-propeller superfamily, protein binding; HET: YCM; 2.40A {Methanosarcina mazei} SCOP: b.1.3.1 b.69.2.3

Probab=99.37  E-value=3.1e-10  Score=93.61  Aligned_cols=180  Identities=13%  Similarity=0.155  Sum_probs=125.9

Q ss_pred             CCcccEEEcCCCc-EEEEe-CCCcEEEEc-cCCceeEecccCCccccceEEccCCCEEEEEeCC-CcEEEEe-cCC-cEE
Q 026118           10 NHPEDVSVDGNGV-LYTAT-GDGWIKRMH-PNGTWEDWHQVGSQSLLGLTTTKENNVIIVCDSQ-QGLLKVS-EEG-VTV   83 (243)
Q Consensus        10 ~~p~~i~~d~~g~-l~~~~-~~~~i~~~~-~~g~~~~~~~~~~~~~~~i~~~~~g~l~~v~~~~-~gl~~~~-~~g-~~~   83 (243)
                      ..+.+++++++|. ||++. .++.|..++ .+++..........+. +++++++|+.++++... ..|..++ .++ ...
T Consensus        32 ~~~~~~~~s~dg~~l~~~~~~d~~i~v~d~~~~~~~~~~~~~~~v~-~~~~spdg~~l~~~~~~~~~v~v~d~~~~~~~~  110 (391)
T 1l0q_A           32 SNPMGAVISPDGTKVYVANAHSNDVSIIDTATNNVIATVPAGSSPQ-GVAVSPDGKQVYVTNMASSTLSVIDTTSNTVAG  110 (391)
T ss_dssp             SSEEEEEECTTSSEEEEEEGGGTEEEEEETTTTEEEEEEECSSSEE-EEEECTTSSEEEEEETTTTEEEEEETTTTEEEE
T ss_pred             CCcceEEECCCCCEEEEECCCCCeEEEEECCCCeEEEEEECCCCcc-ceEECCCCCEEEEEECCCCEEEEEECCCCeEEE
Confidence            4578899999885 66665 778899999 4565544333334556 89999999976777654 5688888 556 322


Q ss_pred             EEeccCCCcccCCccEEEcCCCc-EEEEeCCCCCCcccccccccccCCCceEEEEeCCCCeeEEeeccccccceEEEcCC
Q 026118           84 LVSQFNGSQLRFANDVIEASDGS-LYFTVSSTKFTPAEYYLDLVSGEPHGVLLKYDPSTNQTSLVLDGLYFANGVALSED  162 (243)
Q Consensus        84 ~~~~~~~~~~~~~~~l~~d~~G~-l~v~~~~~~~~~~~~~~~~~~~~~~g~v~~~~~~~~~~~~~~~~~~~~~gi~~~~d  162 (243)
                      ....     ...+.+++++++|+ +|++..                 ..+.|+.+|..+++..........+..++++++
T Consensus       111 ~~~~-----~~~~~~~~~s~dg~~l~~~~~-----------------~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~d  168 (391)
T 1l0q_A          111 TVKT-----GKSPLGLALSPDGKKLYVTNN-----------------GDKTVSVINTVTKAVINTVSVGRSPKGIAVTPD  168 (391)
T ss_dssp             EEEC-----SSSEEEEEECTTSSEEEEEET-----------------TTTEEEEEETTTTEEEEEEECCSSEEEEEECTT
T ss_pred             EEeC-----CCCcceEEECCCCCEEEEEeC-----------------CCCEEEEEECCCCcEEEEEecCCCcceEEECCC
Confidence            2211     13467889999997 656643                 246899999988877665555566789999999


Q ss_pred             CCEEEEEEcCCCeEEEEEeecCCCcceEEeccCCCCCCCceEECCCCC-EEEEEe
Q 026118          163 ERFLVVCESWKFRCVKHFLKVSGRTDREIFIDNLPGGPDNVNLARDGS-FWISII  216 (243)
Q Consensus       163 g~~l~v~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~i~~d~~G~-lwv~~~  216 (243)
                      ++.+|++...++.|..+|.....  ....+.  ....+.+++++++|+ ||++..
T Consensus       169 g~~l~~~~~~~~~v~~~d~~~~~--~~~~~~--~~~~~~~~~~~~~g~~l~~~~~  219 (391)
T 1l0q_A          169 GTKVYVANFDSMSISVIDTVTNS--VIDTVK--VEAAPSGIAVNPEGTKAYVTNV  219 (391)
T ss_dssp             SSEEEEEETTTTEEEEEETTTTE--EEEEEE--CSSEEEEEEECTTSSEEEEEEE
T ss_pred             CCEEEEEeCCCCEEEEEECCCCe--EEEEEe--cCCCccceEECCCCCEEEEEec
Confidence            99899998888899999976531  112221  233567789999987 666664

>1jof_A Carboxy-CIS,CIS-muconate cyclase; beta-propeller, homotetramer, seMet-protein, isomerase; HET: PIN; 2.50A {Neurospora crassa} SCOP: b.69.10.1

Probab=99.36  E-value=1.2e-10  Score=95.75  Aligned_cols=190  Identities=15%  Similarity=0.141  Sum_probs=114.2

Q ss_pred             CcccEEEcCCCc-EE--EEe-------------CCCcEEEEc--cCCceeEecc-----cCCccccceEEccCCCEEEEE
Q 026118           11 HPEDVSVDGNGV-LY--TAT-------------GDGWIKRMH--PNGTWEDWHQ-----VGSQSLLGLTTTKENNVIIVC   67 (243)
Q Consensus        11 ~p~~i~~d~~g~-l~--~~~-------------~~~~i~~~~--~~g~~~~~~~-----~~~~~~~~i~~~~~g~l~~v~   67 (243)
                      .|.+++++++|+ ||  +++             .++.+..++  .+|+......     ....+. +++++++|+++|++
T Consensus        84 ~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~~~~~g~v~v~~~~~~g~~~~~~~~~~~~~~~~~~-~~~~spdG~~l~~~  162 (365)
T 1jof_A           84 HPRANDADTNTRAIFLLAAKQPPYAVYANPFYKFAGYGNVFSVSETGKLEKNVQNYEYQENTGIH-GMVFDPTETYLYSA  162 (365)
T ss_dssp             SGGGGCTTSCCEEEEEEECSSTTCCEEEEEESSSCCEEEEEEECTTCCEEEEEEEEECCTTCCEE-EEEECTTSSEEEEE
T ss_pred             CCccEEECCCCCEEEEEEecCCcceeccceeecCCceEEEEccCCCCcCcceEeeEEeCCCCcce-EEEECCCCCEEEEE
Confidence            478899999997 34  332             355565555  4565432211     224566 89999999976888


Q ss_pred             eCC-CcEEEEe-c-CC-cEEEEeccCCC-cccCCccEEEcCCCc-EEEEeCCCCCCcccccccccccCCCceEEEEeCCC
Q 026118           68 DSQ-QGLLKVS-E-EG-VTVLVSQFNGS-QLRFANDVIEASDGS-LYFTVSSTKFTPAEYYLDLVSGEPHGVLLKYDPST  141 (243)
Q Consensus        68 ~~~-~gl~~~~-~-~g-~~~~~~~~~~~-~~~~~~~l~~d~~G~-l~v~~~~~~~~~~~~~~~~~~~~~~g~v~~~~~~~  141 (243)
                      +.+ ..|..++ . +| ...+.. .... ....|.+++++|+|+ +|+++..               ...-.++.++.++
T Consensus       163 ~~~~~~v~~~~~~~~g~~~~~~~-~~~~~~g~~p~~~~~spdg~~l~v~~~~---------------~~~v~v~~~~~~~  226 (365)
T 1jof_A          163 DLTANKLWTHRKLASGEVELVGS-VDAPDPGDHPRWVAMHPTGNYLYALMEA---------------GNRICEYVIDPAT  226 (365)
T ss_dssp             ETTTTEEEEEEECTTSCEEEEEE-EECSSTTCCEEEEEECTTSSEEEEEETT---------------TTEEEEEEECTTT
T ss_pred             cCCCCEEEEEEECCCCCEEEeee-EecCCCCCCCCEeEECCCCCEEEEEECC---------------CCeEEEEEEeCCC
Confidence            754 4577888 5 66 443322 1111 124578899999996 6676432               0112455667656


Q ss_pred             CeeEE----ee---cc---cc-------ccceEE-EcCCCCEEEEEEcCCC-----eEEEEEeec-CCCcceEEeccCCC
Q 026118          142 NQTSL----VL---DG---LY-------FANGVA-LSEDERFLVVCESWKF-----RCVKHFLKV-SGRTDREIFIDNLP  197 (243)
Q Consensus       142 ~~~~~----~~---~~---~~-------~~~gi~-~~~dg~~l~v~~~~~~-----~i~~~~~~~-~~~~~~~~~~~~~~  197 (243)
                      +++..    +.   ..   ..       .+.+++ ++|||++||+++...+     .|..|+++. +.+...........
T Consensus       227 g~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~spdG~~l~v~~~~~~~~~~~~i~v~~~~~~g~~~~~~~~~~~~~  306 (365)
T 1jof_A          227 HMPVYTHHSFPLIPPGIPDRDPETGKGLYRADVCALTFSGKYMFASSRANKFELQGYIAGFKLRDCGSIEKQLFLSPTPT  306 (365)
T ss_dssp             CCEEEEEEEEESSCTTCCCBCTTTSSBSEEEEEEEECTTSSEEEEEEEESSTTSCCEEEEEEECTTSCEEEEEEEEECSS
T ss_pred             CcEEEccceEEcCCCCcCCcccccccccccccEEEECCCCCEEEEECCCCCCCCCCeEEEEEECCCCCEEEeeeeeecCC
Confidence            66432    21   11   11       477899 9999999999986555     899998863 22211111111223


Q ss_pred             CCCCceEECC---CCC-EEEEEec
Q 026118          198 GGPDNVNLAR---DGS-FWISIIK  217 (243)
Q Consensus       198 ~~~~~i~~d~---~G~-lwv~~~~  217 (243)
                      ..|.++++++   +|+ ||++...
T Consensus       307 ~~~~~~a~sp~~~dg~~l~v~~~~  330 (365)
T 1jof_A          307 SGGHSNAVSPCPWSDEWMAITDDQ  330 (365)
T ss_dssp             CCTTCCCEEECTTCTTEEEEECSS
T ss_pred             CCcccceecCCCcCCCEEEEEEcC
Confidence            3578899998   787 6666543

>3nol_A Glutamine cyclotransferase; beta-propeller, glutaminyl cyclase, pyrogl transferase; 1.70A {Zymomonas mobilis} PDB: 3nom_A

Probab=99.35  E-value=2.8e-10  Score=88.46  Aligned_cols=178  Identities=16%  Similarity=0.128  Sum_probs=110.0

Q ss_pred             ccEEEcCCCcEEEEeC-C--CcEEEEc-cCCceeEecccCCcccc-ceEEccCCCEEEEEeCCCc-EEEEe-cCC--cEE
Q 026118           13 EDVSVDGNGVLYTATG-D--GWIKRMH-PNGTWEDWHQVGSQSLL-GLTTTKENNVIIVCDSQQG-LLKVS-EEG--VTV   83 (243)
Q Consensus        13 ~~i~~d~~g~l~~~~~-~--~~i~~~~-~~g~~~~~~~~~~~~~~-~i~~~~~g~l~~v~~~~~g-l~~~~-~~g--~~~   83 (243)
                      ++|.++ +++||+++. .  ..|.++| .+|++..-......+.+ |++++  |+.+|++++..+ ++.+| .+.  ...
T Consensus        46 qGL~~~-~~~LyestG~~g~S~v~~vD~~Tgkv~~~~~l~~~~FgeGit~~--g~~ly~ltw~~~~v~v~D~~t~~~~~t  122 (262)
T 3nol_A           46 EGFFYR-NGYFYESTGLNGRSSIRKVDIESGKTLQQIELGKRYFGEGISDW--KDKIVGLTWKNGLGFVWNIRNLRQVRS  122 (262)
T ss_dssp             EEEEEE-TTEEEEEEEETTEEEEEEECTTTCCEEEEEECCTTCCEEEEEEE--TTEEEEEESSSSEEEEEETTTCCEEEE
T ss_pred             ceEEEE-CCEEEEECCCCCCceEEEEECCCCcEEEEEecCCccceeEEEEe--CCEEEEEEeeCCEEEEEECccCcEEEE
Confidence            789998 689999983 3  3799999 57776554433334430 45554  444499997654 77888 555  233


Q ss_pred             EEeccCCCcccCCccEEEcCCCcEEEEeCCCCCCcccccccccccCCCceEEEEeCCCCeeEEee-c-----cccccceE
Q 026118           84 LVSQFNGSQLRFANDVIEASDGSLYFTVSSTKFTPAEYYLDLVSGEPHGVLLKYDPSTNQTSLVL-D-----GLYFANGV  157 (243)
Q Consensus        84 ~~~~~~~~~~~~~~~l~~d~~G~l~v~~~~~~~~~~~~~~~~~~~~~~g~v~~~~~~~~~~~~~~-~-----~~~~~~gi  157 (243)
                      +..  .+    ...+++.| .+.+|+++.                  ++.|+.+|+++.+...-. .     ....+|.+
T Consensus       123 i~~--~~----eG~glt~d-g~~L~~SdG------------------s~~i~~iDp~T~~v~~~I~V~~~g~~~~~lNEL  177 (262)
T 3nol_A          123 FNY--DG----EGWGLTHN-DQYLIMSDG------------------TPVLRFLDPESLTPVRTITVTAHGEELPELNEL  177 (262)
T ss_dssp             EEC--SS----CCCCEEEC-SSCEEECCS------------------SSEEEEECTTTCSEEEEEECEETTEECCCEEEE
T ss_pred             EEC--CC----CceEEecC-CCEEEEECC------------------CCeEEEEcCCCCeEEEEEEeccCCcccccccee
Confidence            322  11    23466644 356888852                  358999999987655432 1     12345667


Q ss_pred             EEcCCCCEEEEEEcCCCeEEEEEeecCCCcceEEecc---------CCCCCCCceEECCCCC-EEEEEecCCch
Q 026118          158 ALSEDERFLVVCESWKFRCVKHFLKVSGRTDREIFID---------NLPGGPDNVNLARDGS-FWISIIKMDPK  221 (243)
Q Consensus       158 ~~~~dg~~l~v~~~~~~~i~~~~~~~~~~~~~~~~~~---------~~~~~~~~i~~d~~G~-lwv~~~~~~~~  221 (243)
                      .+. +|+ ||+....++.|.++|+..+.....-.+..         ....-|+|||.|++++ |||.. .....
T Consensus       178 e~~-~G~-lyan~w~~~~I~vIDp~tG~V~~~Id~~~L~~~~~~~~~~~~vlNGIA~dp~~~~lfVTG-K~Wp~  248 (262)
T 3nol_A          178 EWV-DGE-IFANVWQTNKIVRIDPETGKVTGIIDLNGILAEAGPLPSPIDVLNGIAWDKEHHRLFVTG-KLWPK  248 (262)
T ss_dssp             EEE-TTE-EEEEETTSSEEEEECTTTCBEEEEEECTTGGGGSCSCCSSCCCEEEEEEETTTTEEEEEE-TTCSE
T ss_pred             EEE-CCE-EEEEEccCCeEEEEECCCCcEEEEEECCcCccccccccCcCCceEEEEEcCCCCEEEEEC-CCCCc
Confidence            876 676 99998888999999987543222111110         1123578999998765 77743 44433

>1ri6_A Putative isomerase YBHE; 7-bladed propeller, enzyme, PSI, protein structure initiative, NEW YORK SGX research center for structural genomics; 2.00A {Escherichia coli} SCOP: b.69.11.1

Probab=99.33  E-value=2.9e-10  Score=91.66  Aligned_cols=177  Identities=13%  Similarity=0.079  Sum_probs=112.3

Q ss_pred             CCcEEEEe-CCCcEEEEcc--CCceeEec--ccCCccccceEEccCCCEEEEEeCC-CcEEEEe-c--CC-cEEEEeccC
Q 026118           20 NGVLYTAT-GDGWIKRMHP--NGTWEDWH--QVGSQSLLGLTTTKENNVIIVCDSQ-QGLLKVS-E--EG-VTVLVSQFN   89 (243)
Q Consensus        20 ~g~l~~~~-~~~~i~~~~~--~g~~~~~~--~~~~~~~~~i~~~~~g~l~~v~~~~-~gl~~~~-~--~g-~~~~~~~~~   89 (243)
                      +..+|++. .++.|..++.  +++.....  .....+. +++++++|+.+|++... ..+..++ .  ++ .+.+.....
T Consensus         4 ~~~l~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~-~~~~spdg~~l~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~   82 (343)
T 1ri6_A            4 KQTVYIASPESQQIHVWNLNHEGALTLTQVVDVPGQVQ-PMVVSPDKRYLYVGVRPEFRVLAYRIAPDDGALTFAAESAL   82 (343)
T ss_dssp             EEEEEEEEGGGTEEEEEEECTTSCEEEEEEEECSSCCC-CEEECTTSSEEEEEETTTTEEEEEEECTTTCCEEEEEEEEC
T ss_pred             eEEEEEeCCCCCeEEEEEECCCCcEEEeeeEecCCCCc-eEEECCCCCEEEEeecCCCeEEEEEecCCCCceeecccccc
Confidence            34678875 6788888874  35433221  2234566 89999999976888865 4566666 3  45 444332211


Q ss_pred             CCcccCCccEEEcCCCc-EEEEeCCCCCCcccccccccccCCCceEEEEeCCCCe---eEEeeccccccceEEEcCCCCE
Q 026118           90 GSQLRFANDVIEASDGS-LYFTVSSTKFTPAEYYLDLVSGEPHGVLLKYDPSTNQ---TSLVLDGLYFANGVALSEDERF  165 (243)
Q Consensus        90 ~~~~~~~~~l~~d~~G~-l~v~~~~~~~~~~~~~~~~~~~~~~g~v~~~~~~~~~---~~~~~~~~~~~~gi~~~~dg~~  165 (243)
                      .   ..+.+++++++|+ +|++...                 .+.|+.++.+.+.   ..........+.+++++++|++
T Consensus        83 ~---~~~~~~~~s~dg~~l~~~~~~-----------------~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~  142 (343)
T 1ri6_A           83 P---GSLTHISTDHQGQFVFVGSYN-----------------AGNVSVTRLEDGLPVGVVDVVEGLDGCHSANISPDNRT  142 (343)
T ss_dssp             S---SCCSEEEECTTSSEEEEEETT-----------------TTEEEEEEEETTEEEEEEEEECCCTTBCCCEECTTSSE
T ss_pred             C---CCCcEEEEcCCCCEEEEEecC-----------------CCeEEEEECCCCccccccccccCCCCceEEEECCCCCE
Confidence            1   2677899999997 6666432                 2456666662232   2223344456889999999999


Q ss_pred             EEEEEcCCCeEEEEEeec-CCCcceE--EeccCCCCCCCceEECCCCC-EEEEEec
Q 026118          166 LVVCESWKFRCVKHFLKV-SGRTDRE--IFIDNLPGGPDNVNLARDGS-FWISIIK  217 (243)
Q Consensus       166 l~v~~~~~~~i~~~~~~~-~~~~~~~--~~~~~~~~~~~~i~~d~~G~-lwv~~~~  217 (243)
                      +|++...++.|..|++.. +.+....  .+.......|.+++++++|+ ||++...
T Consensus       143 l~~~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pdg~~l~~~~~~  198 (343)
T 1ri6_A          143 LWVPALKQDRICLFTVSDDGHLVAQDPAEVTTVEGAGPRHMVFHPNEQYAYCVNEL  198 (343)
T ss_dssp             EEEEEGGGTEEEEEEECTTSCEEEEEEEEEECSTTCCEEEEEECTTSSEEEEEETT
T ss_pred             EEEecCCCCEEEEEEecCCCceeeecccccccCCCCCcceEEECCCCCEEEEEeCC
Confidence            999986778999999875 3332221  22212233677899999998 7776633

>3scy_A Hypothetical bacterial 6-phosphogluconolactonase; 7-bladed beta-propeller, structural genomics, joint center F structural genomics, JCSG; HET: MSE; 1.50A {Bacteroides fragilis} PDB: 3fgb_A

Probab=99.32  E-value=6.1e-10  Score=91.08  Aligned_cols=157  Identities=14%  Similarity=0.163  Sum_probs=101.3

Q ss_pred             CcccEEEcCCCc-EEEEe-CCCcEEEEc--cCC-----c-ee------Ee-cccCCccccceEEccCCCEEEEEeC-CCc
Q 026118           11 HPEDVSVDGNGV-LYTAT-GDGWIKRMH--PNG-----T-WE------DW-HQVGSQSLLGLTTTKENNVIIVCDS-QQG   72 (243)
Q Consensus        11 ~p~~i~~d~~g~-l~~~~-~~~~i~~~~--~~g-----~-~~------~~-~~~~~~~~~~i~~~~~g~l~~v~~~-~~g   72 (243)
                      .|.+++++++|. ||++. .++.|..++  ..+     + +.      .. ......|. +++++++|+++|++.. ...
T Consensus       156 ~~~~~~~spdg~~l~~~~~~~~~v~v~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~-~~~~spdg~~l~v~~~~~~~  234 (361)
T 3scy_A          156 HLHCVRITPDGKYLLADDLGTDQIHKFNINPNANADNKEKFLTKGTPEAFKVAPGSGPR-HLIFNSDGKFAYLINEIGGT  234 (361)
T ss_dssp             CEEEEEECTTSSEEEEEETTTTEEEEEEECTTCCTTTCCCCEEEEEEEEEECCTTCCEE-EEEECTTSSEEEEEETTTCE
T ss_pred             cceEEEECCCCCEEEEEeCCCCEEEEEEEcCCCCcccccceeecccccceecCCCCCCe-EEEEcCCCCEEEEEcCCCCe
Confidence            457799999996 88887 466776665  323     2 21      11 12224466 8999999997688884 345


Q ss_pred             EEEEe-cCC-cEEEEeccC-CCcccCCccEEEcCCCc-EEEEeCCCCCCcccccccccccCCCceEEEEeCCCCeeEEee
Q 026118           73 LLKVS-EEG-VTVLVSQFN-GSQLRFANDVIEASDGS-LYFTVSSTKFTPAEYYLDLVSGEPHGVLLKYDPSTNQTSLVL  148 (243)
Q Consensus        73 l~~~~-~~g-~~~~~~~~~-~~~~~~~~~l~~d~~G~-l~v~~~~~~~~~~~~~~~~~~~~~~g~v~~~~~~~~~~~~~~  148 (243)
                      |..++ .++ .+.+..... ......+.+++++|||+ +|+++...              ...-.||.+++++++++.+.
T Consensus       235 v~v~~~~~g~~~~~~~~~~~~~~~~~~~~i~~spdg~~l~v~~~~~--------------~~~i~v~~~~~~~g~~~~~~  300 (361)
T 3scy_A          235 VIAFRYADGMLDEIQTVAADTVNAQGSGDIHLSPDGKYLYASNRLK--------------ADGVAIFKVDETNGTLTKVG  300 (361)
T ss_dssp             EEEEEEETTEEEEEEEEESCSSCCCCEEEEEECTTSSEEEEEECSS--------------SCEEEEEEECTTTCCEEEEE
T ss_pred             EEEEEecCCceEEeEEEecCCCCCCCcccEEECCCCCEEEEECCCC--------------CCEEEEEEEcCCCCcEEEee
Confidence            77777 666 444332111 11124567899999998 66664220              01124666776667655432


Q ss_pred             --ccccccceEEEcCCCCEEEEEEcCCCeEEEEEee
Q 026118          149 --DGLYFANGVALSEDERFLVVCESWKFRCVKHFLK  182 (243)
Q Consensus       149 --~~~~~~~gi~~~~dg~~l~v~~~~~~~i~~~~~~  182 (243)
                        .....|.+++|+|||++||++...++.|..|..+
T Consensus       301 ~~~~g~~~~~~~~spdg~~l~~~~~~~~~v~v~~~d  336 (361)
T 3scy_A          301 YQLTGIHPRNFIITPNGKYLLVACRDTNVIQIFERD  336 (361)
T ss_dssp             EEECSSCCCEEEECTTSCEEEEEETTTTEEEEEEEC
T ss_pred             EecCCCCCceEEECCCCCEEEEEECCCCCEEEEEEE
Confidence              2245788999999999999998777888887665

>1l0q_A Surface layer protein; SLP, S-layer, 7-bladed beta-propeller superfamily, protein binding; HET: YCM; 2.40A {Methanosarcina mazei} SCOP: b.1.3.1 b.69.2.3

Probab=99.31  E-value=1.1e-09  Score=90.24  Aligned_cols=180  Identities=15%  Similarity=0.180  Sum_probs=123.3

Q ss_pred             CcccEEEcCCCc-EEEEe-CCCcEEEEcc-CCceeEecccCCccccceEEccCCCEEEEEeCC-CcEEEEe-cCC-cEEE
Q 026118           11 HPEDVSVDGNGV-LYTAT-GDGWIKRMHP-NGTWEDWHQVGSQSLLGLTTTKENNVIIVCDSQ-QGLLKVS-EEG-VTVL   84 (243)
Q Consensus        11 ~p~~i~~d~~g~-l~~~~-~~~~i~~~~~-~g~~~~~~~~~~~~~~~i~~~~~g~l~~v~~~~-~gl~~~~-~~g-~~~~   84 (243)
                      .+.+++++++|. ||++. .++.|+.++. .++..........+. +++++++|+.+|++... +.|..++ .++ ....
T Consensus        75 ~v~~~~~spdg~~l~~~~~~~~~v~v~d~~~~~~~~~~~~~~~~~-~~~~s~dg~~l~~~~~~~~~v~~~d~~~~~~~~~  153 (391)
T 1l0q_A           75 SPQGVAVSPDGKQVYVTNMASSTLSVIDTTSNTVAGTVKTGKSPL-GLALSPDGKKLYVTNNGDKTVSVINTVTKAVINT  153 (391)
T ss_dssp             SEEEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEEEECSSSEE-EEEECTTSSEEEEEETTTTEEEEEETTTTEEEEE
T ss_pred             CccceEECCCCCEEEEEECCCCEEEEEECCCCeEEEEEeCCCCcc-eEEECCCCCEEEEEeCCCCEEEEEECCCCcEEEE
Confidence            677899999885 77776 5688999994 455443333334556 89999999975666654 4577888 566 3222


Q ss_pred             EeccCCCcccCCccEEEcCCCc-EEEEeCCCCCCcccccccccccCCCceEEEEeCCCCeeEEeeccccccceEEEcCCC
Q 026118           85 VSQFNGSQLRFANDVIEASDGS-LYFTVSSTKFTPAEYYLDLVSGEPHGVLLKYDPSTNQTSLVLDGLYFANGVALSEDE  163 (243)
Q Consensus        85 ~~~~~~~~~~~~~~l~~d~~G~-l~v~~~~~~~~~~~~~~~~~~~~~~g~v~~~~~~~~~~~~~~~~~~~~~gi~~~~dg  163 (243)
                      ...     ...+.+++++++|+ +|++...                 .+.|+.+|..+++..........+.++++++++
T Consensus       154 ~~~-----~~~~~~~~~~~dg~~l~~~~~~-----------------~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~~g  211 (391)
T 1l0q_A          154 VSV-----GRSPKGIAVTPDGTKVYVANFD-----------------SMSISVIDTVTNSVIDTVKVEAAPSGIAVNPEG  211 (391)
T ss_dssp             EEC-----CSSEEEEEECTTSSEEEEEETT-----------------TTEEEEEETTTTEEEEEEECSSEEEEEEECTTS
T ss_pred             Eec-----CCCcceEEECCCCCEEEEEeCC-----------------CCEEEEEECCCCeEEEEEecCCCccceEECCCC
Confidence            211     13457889999986 5566432                 357999999888766655555667899999999


Q ss_pred             CEEEEEEc--CCCeEEEEEeecCCCcceEEeccCCCCCCCceEECCCCC-EEEEEec
Q 026118          164 RFLVVCES--WKFRCVKHFLKVSGRTDREIFIDNLPGGPDNVNLARDGS-FWISIIK  217 (243)
Q Consensus       164 ~~l~v~~~--~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~i~~d~~G~-lwv~~~~  217 (243)
                      +++|++..  .++.|..|+.....  ....+.  ....+..++++++|+ ||++...
T Consensus       212 ~~l~~~~~~~~~~~v~~~d~~~~~--~~~~~~--~~~~~~~~~~s~dg~~l~~s~~~  264 (391)
T 1l0q_A          212 TKAYVTNVDKYFNTVSMIDTGTNK--ITARIP--VGPDPAGIAVTPDGKKVYVALSF  264 (391)
T ss_dssp             SEEEEEEECSSCCEEEEEETTTTE--EEEEEE--CCSSEEEEEECTTSSEEEEEETT
T ss_pred             CEEEEEecCcCCCcEEEEECCCCe--EEEEEe--cCCCccEEEEccCCCEEEEEcCC
Confidence            99999875  67899999976431  122222  223467789999997 6676543

>1jmx_B Amine dehydrogenase; oxidoreductase; HET: TRQ HEC; 1.90A {Pseudomonas putida} SCOP: b.69.2.2 PDB: 1jmz_B*

Probab=99.30  E-value=3.4e-10  Score=91.58  Aligned_cols=175  Identities=17%  Similarity=0.059  Sum_probs=107.8

Q ss_pred             CcccEEEcCCCc-EEEEe-CCCcEEEEcc-CCceeEecccC-------CccccceEEccCCCEEEEEeCC----------
Q 026118           11 HPEDVSVDGNGV-LYTAT-GDGWIKRMHP-NGTWEDWHQVG-------SQSLLGLTTTKENNVIIVCDSQ----------   70 (243)
Q Consensus        11 ~p~~i~~d~~g~-l~~~~-~~~~i~~~~~-~g~~~~~~~~~-------~~~~~~i~~~~~g~l~~v~~~~----------   70 (243)
                      .|.+++++++|. +|++. .++.|+.++. +++........       ..+. +++++++|+.++++...          
T Consensus        44 ~~~~~~~s~dg~~~~v~~~~~~~i~~~d~~t~~~~~~~~~~~~~~~~~~~~~-~~~~spdg~~l~~~~~~~~~~~~~~~~  122 (349)
T 1jmx_B           44 GPGTAMMAPDNRTAYVLNNHYGDIYGIDLDTCKNTFHANLSSVPGEVGRSMY-SFAISPDGKEVYATVNPTQRLNDHYVV  122 (349)
T ss_dssp             SSCEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEEEESCCSTTEEEECSS-CEEECTTSSEEEEEEEEEEECSSCEEE
T ss_pred             CCceeEECCCCCEEEEEeCCCCcEEEEeCCCCcEEEEEEccccccccccccc-ceEECCCCCEEEEEccccccccccccc
Confidence            588999999985 78776 5778999994 45543322211       1256 89999999987887743          


Q ss_pred             --CcEEEEe-cCC-cEEEEeccCCCcccCCccEEEcCCCcEEEEeCCCCCCcccccccccccCCCceEEEEeCCC-----
Q 026118           71 --QGLLKVS-EEG-VTVLVSQFNGSQLRFANDVIEASDGSLYFTVSSTKFTPAEYYLDLVSGEPHGVLLKYDPST-----  141 (243)
Q Consensus        71 --~gl~~~~-~~g-~~~~~~~~~~~~~~~~~~l~~d~~G~l~v~~~~~~~~~~~~~~~~~~~~~~g~v~~~~~~~-----  141 (243)
                        ..|..++ .++ ..........  ...+.+++++++|++|++..                    .|+.+|.++     
T Consensus       123 ~~~~i~~~d~~~~~~~~~~~~~~~--~~~~~~~~~s~dg~l~~~~~--------------------~i~~~d~~~~~~~~  180 (349)
T 1jmx_B          123 KPPRLEVFSTADGLEAKPVRTFPM--PRQVYLMRAADDGSLYVAGP--------------------DIYKMDVKTGKYTV  180 (349)
T ss_dssp             CCCEEEEEEGGGGGGBCCSEEEEC--CSSCCCEEECTTSCEEEESS--------------------SEEEECTTTCCEEE
T ss_pred             CCCeEEEEECCCccccceeeeccC--CCcccceeECCCCcEEEccC--------------------cEEEEeCCCCceec
Confidence              5688888 554 2111110111  12467888999999777521                    133333333     


Q ss_pred             --------------------------------------------------------------CeeEEee--ccccccceE
Q 026118          142 --------------------------------------------------------------NQTSLVL--DGLYFANGV  157 (243)
Q Consensus       142 --------------------------------------------------------------~~~~~~~--~~~~~~~gi  157 (243)
                                                                                    ++++.+.  .....+.++
T Consensus       181 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  260 (349)
T 1jmx_B          181 ALPLRNWNRKGYSAPDVLYFWPHQSPRHEFSMLYTIARFKDDKQDPATADLLYGYLSVDLKTGKTHTQEFADLTELYFTG  260 (349)
T ss_dssp             EECSTTCCCTTBCCCBCCCCCCCCCTTCEEEEEEEEEEC-------CCCEEEEEEEEEETTTCCEEEEEEEECSSCEEEE
T ss_pred             cccccccCCccccCccceeeecCCCcceeEEeeeeeeecCCCcCCccccccceeEEEEeccCCcEEecccccCCCcceee
Confidence                                                                          3322211  111245678


Q ss_pred             EEcC-CCCEEEEEEcCCCeEEEEEeecCCCcceEEeccCCCCCCCceEECCCCC-EEEEE
Q 026118          158 ALSE-DERFLVVCESWKFRCVKHFLKVSGRTDREIFIDNLPGGPDNVNLARDGS-FWISI  215 (243)
Q Consensus       158 ~~~~-dg~~l~v~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~i~~d~~G~-lwv~~  215 (243)
                      ++++ +|+++|++   .+.|+.|+.....  ....+.  ....|.+++++++|+ ||++.
T Consensus       261 ~~sp~dg~~l~~~---~~~v~~~d~~~~~--~~~~~~--~~~~~~~~~~s~dg~~l~~~~  313 (349)
T 1jmx_B          261 LRSPKDPNQIYGV---LNRLAKYDLKQRK--LIKAAN--LDHTYYCVAFDKKGDKLYLGG  313 (349)
T ss_dssp             EECSSCTTEEEEE---ESEEEEEETTTTE--EEEEEE--CSSCCCEEEECSSSSCEEEES
T ss_pred             EecCCCCCEEEEE---cCeEEEEECccCe--EEEEEc--CCCCccceEECCCCCEEEEec
Confidence            8889 99989888   5789999976431  112221  233578899999986 78753

>1pby_B Quinohemoprotein amine dehydrogenase 40 kDa subunit; oxidoreductase; HET: TRW HEM; 1.70A {Paracoccus denitrificans} SCOP: b.69.2.2 PDB: 1jju_B*

Probab=99.29  E-value=2.8e-10  Score=91.54  Aligned_cols=136  Identities=13%  Similarity=0.051  Sum_probs=90.5

Q ss_pred             CcccEEEcCCC-cEEEEe-CCCcEEEEc-cCCceeEecccCC------ccccceEEccCCCEEEEEe------------C
Q 026118           11 HPEDVSVDGNG-VLYTAT-GDGWIKRMH-PNGTWEDWHQVGS------QSLLGLTTTKENNVIIVCD------------S   69 (243)
Q Consensus        11 ~p~~i~~d~~g-~l~~~~-~~~~i~~~~-~~g~~~~~~~~~~------~~~~~i~~~~~g~l~~v~~------------~   69 (243)
                      .|.+++++++| .+|++. .++.|+.++ .+++.........      .+. +++++++|+.+|++.            .
T Consensus        35 ~~~~~~~s~dg~~l~v~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~-~~~~s~dg~~l~~~~~~~~~~~~~~~~~  113 (337)
T 1pby_B           35 TPMVPMVAPGGRIAYATVNKSESLVKIDLVTGETLGRIDLSTPEERVKSLF-GAALSPDGKTLAIYESPVRLELTHFEVQ  113 (337)
T ss_dssp             CCCCEEECTTSSEEEEEETTTTEEEEEETTTCCEEEEEECCBTTEEEECTT-CEEECTTSSEEEEEEEEEEECSSCEEEC
T ss_pred             CccceEEcCCCCEEEEEeCCCCeEEEEECCCCCeEeeEEcCCccccccccc-ceEECCCCCEEEEEeccccccccccccc
Confidence            58999999998 578776 567899999 4555443222112      566 899999998768885            2


Q ss_pred             CCcEEEEe-cCC-cEEEEeccCCCcccCCccEEEcCCCc-EEEEeCCCCCCcccccccccccCCCceEEEEeCCCCeeEE
Q 026118           70 QQGLLKVS-EEG-VTVLVSQFNGSQLRFANDVIEASDGS-LYFTVSSTKFTPAEYYLDLVSGEPHGVLLKYDPSTNQTSL  146 (243)
Q Consensus        70 ~~gl~~~~-~~g-~~~~~~~~~~~~~~~~~~l~~d~~G~-l~v~~~~~~~~~~~~~~~~~~~~~~g~v~~~~~~~~~~~~  146 (243)
                      ...|..++ .++ .......  +   ..+.+++++++|+ +|+++                    +.|+.+|.++++...
T Consensus       114 ~~~i~v~d~~~~~~~~~~~~--~---~~~~~~~~s~dg~~l~~~~--------------------~~i~~~d~~~~~~~~  168 (337)
T 1pby_B          114 PTRVALYDAETLSRRKAFEA--P---RQITMLAWARDGSKLYGLG--------------------RDLHVMDPEAGTLVE  168 (337)
T ss_dssp             CCEEEEEETTTTEEEEEEEC--C---SSCCCEEECTTSSCEEEES--------------------SSEEEEETTTTEEEE
T ss_pred             CceEEEEECCCCcEEEEEeC--C---CCcceeEECCCCCEEEEeC--------------------CeEEEEECCCCcEee
Confidence            35788888 555 3222211  1   3467889999997 66661                    368999998887665


Q ss_pred             eeccccccceEEEcCCCCEEEEEEcC
Q 026118          147 VLDGLYFANGVALSEDERFLVVCESW  172 (243)
Q Consensus       147 ~~~~~~~~~gi~~~~dg~~l~v~~~~  172 (243)
                      .......+..++++++|+.+|++...
T Consensus       169 ~~~~~~~~~~~~~s~dg~~l~~~~~~  194 (337)
T 1pby_B          169 DKPIQSWEAETYAQPDVLAVWNQHES  194 (337)
T ss_dssp             EECSTTTTTTTBCCCBCCCCCCCCTT
T ss_pred             eeeccccCCCceeCCCccEEeeeccC
Confidence            44332323345778888877766543

>3mbr_X Glutamine cyclotransferase; beta-propeller; 1.44A {Xanthomonas campestris}

Probab=99.28  E-value=1.8e-09  Score=83.21  Aligned_cols=181  Identities=14%  Similarity=0.078  Sum_probs=110.0

Q ss_pred             CcccEEEcCCCcEEEEeCC---CcEEEEc-cCCceeEecccCCcccc-ceEEccCCCEEEEEeCCCc-EEEEe-cCCcEE
Q 026118           11 HPEDVSVDGNGVLYTATGD---GWIKRMH-PNGTWEDWHQVGSQSLL-GLTTTKENNVIIVCDSQQG-LLKVS-EEGVTV   83 (243)
Q Consensus        11 ~p~~i~~d~~g~l~~~~~~---~~i~~~~-~~g~~~~~~~~~~~~~~-~i~~~~~g~l~~v~~~~~g-l~~~~-~~g~~~   83 (243)
                      .-+++.++. ++||.++..   ..|.++| .+|++..-......+.+ |++++  ++.+|+.++..+ ++.+| .+. +.
T Consensus        22 ftqGL~~~~-~~LyestG~~g~S~v~~vD~~tgkv~~~~~l~~~~fgeGi~~~--~~~ly~ltw~~~~v~v~D~~tl-~~   97 (243)
T 3mbr_X           22 FTEGLFYLR-GHLYESTGETGRSSVRKVDLETGRILQRAEVPPPYFGAGIVAW--RDRLIQLTWRNHEGFVYDLATL-TP   97 (243)
T ss_dssp             CEEEEEEET-TEEEEEECCTTSCEEEEEETTTCCEEEEEECCTTCCEEEEEEE--TTEEEEEESSSSEEEEEETTTT-EE
T ss_pred             ccccEEEEC-CEEEEECCCCCCceEEEEECCCCCEEEEEeCCCCcceeEEEEe--CCEEEEEEeeCCEEEEEECCcC-cE
Confidence            345788886 799999843   4799999 57776654433334430 45554  444499997655 77888 454 22


Q ss_pred             EEeccCCCcccCCccEEEcCCCcEEEEeCCCCCCcccccccccccCCCceEEEEeCCCCeeEEeecc------ccccceE
Q 026118           84 LVSQFNGSQLRFANDVIEASDGSLYFTVSSTKFTPAEYYLDLVSGEPHGVLLKYDPSTNQTSLVLDG------LYFANGV  157 (243)
Q Consensus        84 ~~~~~~~~~~~~~~~l~~d~~G~l~v~~~~~~~~~~~~~~~~~~~~~~g~v~~~~~~~~~~~~~~~~------~~~~~gi  157 (243)
                      +.....+   ....+++.| .+++|+++.                  ++.|+.+|+++.+...-..-      ....|.|
T Consensus        98 ~~ti~~~---~~Gwglt~d-g~~L~vSdg------------------s~~l~~iDp~t~~~~~~I~V~~~g~~~~~lNeL  155 (243)
T 3mbr_X           98 RARFRYP---GEGWALTSD-DSHLYMSDG------------------TAVIRKLDPDTLQQVGSIKVTAGGRPLDNLNEL  155 (243)
T ss_dssp             EEEEECS---SCCCEEEEC-SSCEEEECS------------------SSEEEEECTTTCCEEEEEECEETTEECCCEEEE
T ss_pred             EEEEeCC---CCceEEeeC-CCEEEEECC------------------CCeEEEEeCCCCeEEEEEEEccCCcccccceee
Confidence            2221111   123466544 357999862                  35899999998765443211      2345667


Q ss_pred             EEcCCCCEEEEEEcCCCeEEEEEeecCCCcceEEecc----------CCCCCCCceEECCCCC-EEEEEecCCc
Q 026118          158 ALSEDERFLVVCESWKFRCVKHFLKVSGRTDREIFID----------NLPGGPDNVNLARDGS-FWISIIKMDP  220 (243)
Q Consensus       158 ~~~~dg~~l~v~~~~~~~i~~~~~~~~~~~~~~~~~~----------~~~~~~~~i~~d~~G~-lwv~~~~~~~  220 (243)
                      .+. +|+ ||+....++.|.++|+..+.....--+..          ....-++|||.|++++ |||. .....
T Consensus       156 e~~-~G~-lyanvw~s~~I~vIDp~tG~V~~~idl~~l~~~~~~~~~~~~~vlNGIA~d~~~~~lfVT-GK~wp  226 (243)
T 3mbr_X          156 EWV-NGE-LLANVWLTSRIARIDPASGKVVAWIDLQALVPDADALTDSTNDVLNGIAFDAEHDRLFVT-GKRWP  226 (243)
T ss_dssp             EEE-TTE-EEEEETTTTEEEEECTTTCBEEEEEECGGGSTTTTSCCCTTSSCEEEEEEETTTTEEEEE-ETTCS
T ss_pred             EEe-CCE-EEEEECCCCeEEEEECCCCCEEEEEECCcCccccccccCCcCCceEEEEEcCCCCEEEEE-CCCCC
Confidence            765 676 99988788999999987543221111110          0112578899998765 7774 34443

>3nok_A Glutaminyl cyclase; beta-propeller, cyclotransferase, pyrogl transferase; HET: MES DDQ; 1.65A {Myxococcus xanthus}

Probab=99.28  E-value=9.2e-10  Score=85.62  Aligned_cols=174  Identities=8%  Similarity=-0.013  Sum_probs=108.4

Q ss_pred             ccEEEcCCCcEEEEe-CCCcEEEEc-cCCceeEecccCCcccc-ceEEccCCCEEEEEeCCCc-EEEEe-cCCcEEEEec
Q 026118           13 EDVSVDGNGVLYTAT-GDGWIKRMH-PNGTWEDWHQVGSQSLL-GLTTTKENNVIIVCDSQQG-LLKVS-EEGVTVLVSQ   87 (243)
Q Consensus        13 ~~i~~d~~g~l~~~~-~~~~i~~~~-~~g~~~~~~~~~~~~~~-~i~~~~~g~l~~v~~~~~g-l~~~~-~~g~~~~~~~   87 (243)
                      ++|.++ +++||+++ ..+.|.++| .++++..-. ....+.+ |++++. +++ |++++..+ ++.+| .+. +.+...
T Consensus        58 qGL~~~-~~~Ly~stG~~g~v~~iD~~Tgkv~~~~-l~~~~FgeGit~~g-~~L-y~ltw~~~~v~V~D~~Tl-~~~~ti  132 (268)
T 3nok_A           58 QGLVFH-QGHFFESTGHQGTLRQLSLESAQPVWME-RLGNIFAEGLASDG-ERL-YQLTWTEGLLFTWSGMPP-QRERTT  132 (268)
T ss_dssp             EEEEEE-TTEEEEEETTTTEEEECCSSCSSCSEEE-ECTTCCEEEEEECS-SCE-EEEESSSCEEEEEETTTT-EEEEEE
T ss_pred             ceEEEE-CCEEEEEcCCCCEEEEEECCCCcEEeEE-CCCCcceeEEEEeC-CEE-EEEEccCCEEEEEECCcC-cEEEEE
Confidence            688887 47999998 566799999 567654433 3333330 466653 355 99997655 77888 555 222221


Q ss_pred             cCCCcccCCccEEEcCCCcEEEEeCCCCCCcccccccccccCCCceEEEEeCCCCeeEEeec------cccccceEEEcC
Q 026118           88 FNGSQLRFANDVIEASDGSLYFTVSSTKFTPAEYYLDLVSGEPHGVLLKYDPSTNQTSLVLD------GLYFANGVALSE  161 (243)
Q Consensus        88 ~~~~~~~~~~~l~~d~~G~l~v~~~~~~~~~~~~~~~~~~~~~~g~v~~~~~~~~~~~~~~~------~~~~~~gi~~~~  161 (243)
                      ...   ....+++.| .++||+++.                  ++.|+.+|+++.+...-..      .....|.|.+. 
T Consensus       133 ~~~---~eGwGLt~D-g~~L~vSdG------------------s~~l~~iDp~T~~v~~~I~V~~~g~~v~~lNeLe~~-  189 (268)
T 3nok_A          133 RYS---GEGWGLCYW-NGKLVRSDG------------------GTMLTFHEPDGFALVGAVQVKLRGQPVELINELECA-  189 (268)
T ss_dssp             ECS---SCCCCEEEE-TTEEEEECS------------------SSEEEEECTTTCCEEEEEECEETTEECCCEEEEEEE-
T ss_pred             eCC---CceeEEecC-CCEEEEECC------------------CCEEEEEcCCCCeEEEEEEeCCCCcccccccccEEe-
Confidence            111   123466655 347888852                  3589999999876554321      12345778876 


Q ss_pred             CCCEEEEEEcCCCeEEEEEeecCCCcceEEec----------cCCCCCCCceEECCCC-CEEEEE
Q 026118          162 DERFLVVCESWKFRCVKHFLKVSGRTDREIFI----------DNLPGGPDNVNLARDG-SFWISI  215 (243)
Q Consensus       162 dg~~l~v~~~~~~~i~~~~~~~~~~~~~~~~~----------~~~~~~~~~i~~d~~G-~lwv~~  215 (243)
                      +|+ ||+....++.|.++|+..+.....--+.          .....-++|||.|+++ +|||..
T Consensus       190 dG~-lyanvw~s~~I~vIDp~TG~V~~~Idl~~L~~~~~~~~~~~~~vlNGIA~dp~~~rlfVTG  253 (268)
T 3nok_A          190 NGV-IYANIWHSSDVLEIDPATGTVVGVIDASALTRAVAGQVTNPEAVLNGIAVEPGSGRIFMTG  253 (268)
T ss_dssp             TTE-EEEEETTCSEEEEECTTTCBEEEEEECHHHHHHHTTTCCCTTCCEEEEEECTTTCCEEEEE
T ss_pred             CCE-EEEEECCCCeEEEEeCCCCcEEEEEECCCCcccccccccCcCCceEEEEEcCCCCEEEEeC
Confidence            776 9999888899999998764322211111          0011357899999875 588843

>2ism_A Putative oxidoreductase; BL41XU spring-8, bladed beta-propellor, glucose dehydrogenas structural genomics, NPPSFA; 1.90A {Thermus thermophilus}

Probab=99.28  E-value=1.9e-10  Score=94.39  Aligned_cols=163  Identities=12%  Similarity=0.079  Sum_probs=104.9

Q ss_pred             ceeEecccCCccccceEEccCCCEEEEEeCCCcEEEEecCC-cEEEEecc-CCCcccCCccEEEcCC----CcEEEEeCC
Q 026118           40 TWEDWHQVGSQSLLGLTTTKENNVIIVCDSQQGLLKVSEEG-VTVLVSQF-NGSQLRFANDVIEASD----GSLYFTVSS  113 (243)
Q Consensus        40 ~~~~~~~~~~~~~~~i~~~~~g~l~~v~~~~~gl~~~~~~g-~~~~~~~~-~~~~~~~~~~l~~d~~----G~l~v~~~~  113 (243)
                      +++.+......|. +|+++++|++ ||+.....|++++ ++ .+.+.... .......+.+|+++++    +.+|+++..
T Consensus        22 ~~~~va~~l~~P~-~ia~~pdG~l-~V~e~~g~I~~i~-~g~~~~~~~~~v~~~g~~~p~gia~~pdf~~~g~lYv~~~~   98 (352)
T 2ism_A           22 RVEEVVGGLEVPW-ALAFLPDGGM-LIAERPGRIRLFR-EGRLSTYAELSVYHRGESGLLGLALHPRFPQEPYVYAYRTV   98 (352)
T ss_dssp             CEEEEECCCSCEE-EEEECTTSCE-EEEETTTEEEEEE-TTEEEEEEECCCCCSTTCSEEEEEECTTTTTSCEEEEEEEE
T ss_pred             EEEEEECCCCCce-EEEEcCCCeE-EEEeCCCeEEEEE-CCCccEeecceEeecCCCCceeEEECCCCCCCCEEEEEEec
Confidence            4444444456788 9999999998 9999777788887 55 44333211 1122457889999998    789998642


Q ss_pred             CCCCcccccccccccCCCceEEEEeCCCCe---eEEeec-------cccccceEEEcCCCCEEEEEEc------------
Q 026118          114 TKFTPAEYYLDLVSGEPHGVLLKYDPSTNQ---TSLVLD-------GLYFANGVALSEDERFLVVCES------------  171 (243)
Q Consensus       114 ~~~~~~~~~~~~~~~~~~g~v~~~~~~~~~---~~~~~~-------~~~~~~gi~~~~dg~~l~v~~~------------  171 (243)
                      ..            .....+|++++.+++.   .+.+..       ....+++|++++||+ ||++..            
T Consensus        99 ~~------------~~~~~~v~r~~~~~~~~~~~~~l~~~~p~~~~~~h~~~~l~~~pdG~-Lyv~~G~~~~~~~~~d~~  165 (352)
T 2ism_A           99 AE------------GGLRNQVVRLRHLGERGVLDRVVLDGIPARPHGLHSGGRIAFGPDGM-LYVTTGEVYERELAQDLA  165 (352)
T ss_dssp             CT------------TSSEEEEEEEEECSSCEEEEEEEEEEECCCTTCCCCCCCEEECTTSC-EEEECCCTTCGGGGGCTT
T ss_pred             CC------------CCCccEEEEEEeCCCCcCceEEEEEeCCCCCCCCcCCceEEECCCCC-EEEEECCCCCCccccCCC
Confidence            00            0012578999877442   222221       123568999999997 999852            


Q ss_pred             -CCCeEEEEEeecCC-----C-----cceEEeccCCCCCCCceEECC-CCCEEEEEecCC
Q 026118          172 -WKFRCVKHFLKVSG-----R-----TDREIFIDNLPGGPDNVNLAR-DGSFWISIIKMD  219 (243)
Q Consensus       172 -~~~~i~~~~~~~~~-----~-----~~~~~~~~~~~~~~~~i~~d~-~G~lwv~~~~~~  219 (243)
                       ..+.|+++++++..     +     ...+++... ...|.+|++|+ +|+||+++....
T Consensus       166 ~~~g~I~ri~~dG~~p~~npf~~~~~~~~~i~a~G-~rnp~g~a~d~~~g~l~v~d~g~~  224 (352)
T 2ism_A          166 SLGGKILRLTPEGEPAPGNPFLGRRGARPEVYSLG-HRNPQGLAWHPKTGELFSSEHGPS  224 (352)
T ss_dssp             CSSSEEEEECTTSSBCTTCTTTTCTTSCTTEEEEC-CSEECCCEECTTTCCEEEEEECC-
T ss_pred             CCceEEEEEcCCCCCCCCCcccCCCCCCccEEEEc-CCCcccEEEECCCCCEEEEEcCCC
Confidence             12589999876510     0     122333222 12489999999 899999987643

>1nir_A Nitrite reductase; hemoprotein, denitrification, domain swapping; HET: HEC DHE; 2.15A {Pseudomonas aeruginosa} SCOP: a.3.1.2 b.70.2.1 PDB: 1bl9_A* 1n15_A* 1n50_A* 1n90_A* 1gjq_A* 1nno_A* 1hzv_A* 1hzu_A*

Probab=99.26  E-value=1.1e-09  Score=94.96  Aligned_cols=179  Identities=8%  Similarity=-0.068  Sum_probs=121.4

Q ss_pred             EEcCCCcEEEEe-CCCcEEEEc-cCCceeEecccCCccccceEEccCCCEEEEEeCCCcEEEEec--CCcEEEEeccCCC
Q 026118           16 SVDGNGVLYTAT-GDGWIKRMH-PNGTWEDWHQVGSQSLLGLTTTKENNVIIVCDSQQGLLKVSE--EGVTVLVSQFNGS   91 (243)
Q Consensus        16 ~~d~~g~l~~~~-~~~~i~~~~-~~g~~~~~~~~~~~~~~~i~~~~~g~l~~v~~~~~gl~~~~~--~g~~~~~~~~~~~   91 (243)
                      ++++++.+|++. .++.|..+| ..++..........+. +++++++|++||+++.++.|..+|.  ...+.+.....+ 
T Consensus       144 ~~~p~~~~~vs~~~d~~V~v~D~~t~~~~~~i~~g~~~~-~v~~spdg~~l~v~~~d~~V~v~D~~~~t~~~~~~i~~g-  221 (543)
T 1nir_A          144 DLDLPNLFSVTLRDAGQIALVDGDSKKIVKVIDTGYAVH-ISRMSASGRYLLVIGRDARIDMIDLWAKEPTKVAEIKIG-  221 (543)
T ss_dssp             CCCGGGEEEEEEGGGTEEEEEETTTCCEEEEEECSTTEE-EEEECTTSCEEEEEETTSEEEEEETTSSSCEEEEEEECC-
T ss_pred             ccCCCCEEEEEEcCCCeEEEEECCCceEEEEEecCcccc-eEEECCCCCEEEEECCCCeEEEEECcCCCCcEEEEEecC-
Confidence            367888999887 677899999 4565443322222356 8999999998899998767888884  222322222222 


Q ss_pred             cccCCccEEEcC----CCc-EEEEeCCCCCCcccccccccccCCCceEEEEeCCCCeeEEeecc------------cccc
Q 026118           92 QLRFANDVIEAS----DGS-LYFTVSSTKFTPAEYYLDLVSGEPHGVLLKYDPSTNQTSLVLDG------------LYFA  154 (243)
Q Consensus        92 ~~~~~~~l~~d~----~G~-l~v~~~~~~~~~~~~~~~~~~~~~~g~v~~~~~~~~~~~~~~~~------------~~~~  154 (243)
                        ..|.+++++|    +|+ +|+++.                 ..+.|..+|..+++.......            ...+
T Consensus       222 --~~p~~va~sp~~~~dg~~l~v~~~-----------------~~~~v~v~D~~t~~~~~~i~~~g~~~~~~~~~~~~~v  282 (543)
T 1nir_A          222 --IEARSVESSKFKGYEDRYTIAGAY-----------------WPPQFAIMDGETLEPKQIVSTRGMTVDTQTYHPEPRV  282 (543)
T ss_dssp             --SEEEEEEECCSTTCTTTEEEEEEE-----------------ESSEEEEEETTTCCEEEEEECCEECSSSCCEESCCCE
T ss_pred             --CCcceEEeCCCcCCCCCEEEEEEc-----------------cCCeEEEEeccccccceeecccCcccCccccccCCce
Confidence              3578999999    987 666642                 134688889887765543221            1245


Q ss_pred             ceEEEcCCCCEEEEEEcCCCeEEEEEeecCCCcceEEeccCCCCCCCceEECCCCC-EEEEEec
Q 026118          155 NGVALSEDERFLVVCESWKFRCVKHFLKVSGRTDREIFIDNLPGGPDNVNLARDGS-FWISIIK  217 (243)
Q Consensus       155 ~gi~~~~dg~~l~v~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~i~~d~~G~-lwv~~~~  217 (243)
                      .+++++++++.+|++...++.|+.++...........+.  ...+|.+++++++|+ +|++...
T Consensus       283 ~~i~~s~~~~~~~vs~~~~g~i~vvd~~~~~~l~~~~i~--~~~~~~~~~~spdg~~l~va~~~  344 (543)
T 1nir_A          283 AAIIASHEHPEFIVNVKETGKVLLVNYKDIDNLTVTSIG--AAPFLHDGGWDSSHRYFMTAANN  344 (543)
T ss_dssp             EEEEECSSSSEEEEEETTTTEEEEEECTTSSSCEEEEEE--CCSSCCCEEECTTSCEEEEEEGG
T ss_pred             EEEEECCCCCEEEEEECCCCeEEEEEecCCCcceeEEec--cCcCccCceECCCCCEEEEEecC
Confidence            689999999989999888899999998753322222222  244789999999999 6666543

>3bws_A Protein LP49; two-domain, immunoglobulin-like, 7-bladed beta propeller, unknown function; 1.99A {Leptospira interrogans}

Probab=99.25  E-value=3.4e-09  Score=88.48  Aligned_cols=179  Identities=13%  Similarity=0.077  Sum_probs=121.7

Q ss_pred             CCcccEEEcCCCc-EEEEe-CCCcEEEEcc-CCceeEecccCCccccceEEccCCCEEEEEeC--------CCcEEEEe-
Q 026118           10 NHPEDVSVDGNGV-LYTAT-GDGWIKRMHP-NGTWEDWHQVGSQSLLGLTTTKENNVIIVCDS--------QQGLLKVS-   77 (243)
Q Consensus        10 ~~p~~i~~d~~g~-l~~~~-~~~~i~~~~~-~g~~~~~~~~~~~~~~~i~~~~~g~l~~v~~~--------~~gl~~~~-   77 (243)
                      ..+.+++++++|. +|++. .++.|+.++. .++..........+. +++++++|+.++++..        .+.|..++ 
T Consensus       212 ~~~~~~~~~~~~~~l~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~-~~~~~~~g~~l~~~~~~~~~~~~~dg~i~~~d~  290 (433)
T 3bws_A          212 KWSKILLYDPIRDLVYCSNWISEDISVIDRKTKLEIRKTDKIGLPR-GLLLSKDGKELYIAQFSASNQESGGGRLGIYSM  290 (433)
T ss_dssp             SSEEEEEEETTTTEEEEEETTTTEEEEEETTTTEEEEECCCCSEEE-EEEECTTSSEEEEEEEESCTTCSCCEEEEEEET
T ss_pred             CCeeEEEEcCCCCEEEEEecCCCcEEEEECCCCcEEEEecCCCCce-EEEEcCCCCEEEEEECCCCccccCCCeEEEEEC
Confidence            4678899999885 66666 6788999994 555443333334466 8999999987677763        33577888 


Q ss_pred             cCC-cEEEEeccCCCcccCCccEEEcCCCc-EEEEeCCCCCCcccccccccccCCCceEEEEeCCCCeeEEeeccccccc
Q 026118           78 EEG-VTVLVSQFNGSQLRFANDVIEASDGS-LYFTVSSTKFTPAEYYLDLVSGEPHGVLLKYDPSTNQTSLVLDGLYFAN  155 (243)
Q Consensus        78 ~~g-~~~~~~~~~~~~~~~~~~l~~d~~G~-l~v~~~~~~~~~~~~~~~~~~~~~~g~v~~~~~~~~~~~~~~~~~~~~~  155 (243)
                      .++ .......     ...+.+++++++|+ +|++...                 .+.|..+|.++++..........+.
T Consensus       291 ~~~~~~~~~~~-----~~~~~~~~~~~~g~~l~~~~~~-----------------~~~v~v~d~~~~~~~~~~~~~~~~~  348 (433)
T 3bws_A          291 DKEKLIDTIGP-----PGNKRHIVSGNTENKIYVSDMC-----------------CSKIEVYDLKEKKVQKSIPVFDKPN  348 (433)
T ss_dssp             TTTEEEEEEEE-----EECEEEEEECSSTTEEEEEETT-----------------TTEEEEEETTTTEEEEEEECSSSEE
T ss_pred             CCCcEEeeccC-----CCCcceEEECCCCCEEEEEecC-----------------CCEEEEEECCCCcEEEEecCCCCCC
Confidence            566 3222211     12456789999985 7777432                 4689999998887665555556688


Q ss_pred             eEEEcCCCCEEEEEEcCC--------------CeEEEEEeecCCCcceEEeccCCCCCCCceEECCCCCE-EEEE
Q 026118          156 GVALSEDERFLVVCESWK--------------FRCVKHFLKVSGRTDREIFIDNLPGGPDNVNLARDGSF-WISI  215 (243)
Q Consensus       156 gi~~~~dg~~l~v~~~~~--------------~~i~~~~~~~~~~~~~~~~~~~~~~~~~~i~~d~~G~l-wv~~  215 (243)
                      +++++++|+++|++....              +.|+.++.....  ....+.  ....+.+++++++|+. +++.
T Consensus       349 ~~~~s~dg~~l~~~~~~~~~~~~~~~~~g~~dg~v~~~d~~~~~--~~~~~~--~~~~~~~~~~s~dg~~l~~~~  419 (433)
T 3bws_A          349 TIALSPDGKYLYVSCRGPNHPTEGYLKKGLVLGKVYVIDTTTDT--VKEFWE--AGNQPTGLDVSPDNRYLVISD  419 (433)
T ss_dssp             EEEECTTSSEEEEEECCCCCTTTCTTSCCSSCCEEEEEETTTTE--EEEEEE--CSSSEEEEEECTTSCEEEEEE
T ss_pred             eEEEcCCCCEEEEEecCCCccccccccccccceEEEEEECCCCc--EEEEec--CCCCCceEEEcCCCCEEEEEE
Confidence            999999999899987653              489999875421  122222  1345788999999984 4544

>2ece_A 462AA long hypothetical selenium-binding protein; beta propeller, structural genomics, unknown function; 2.00A {Sulfolobus tokodaii}

Probab=99.25  E-value=1.1e-09  Score=91.31  Aligned_cols=192  Identities=11%  Similarity=0.077  Sum_probs=115.5

Q ss_pred             cCCcccEEEcCCCcEEEEe-CC------CcEEEEcc-CCceeEecccCCcc----ccceEEccCCCEEEEEeC-------
Q 026118            9 VNHPEDVSVDGNGVLYTAT-GD------GWIKRMHP-NGTWEDWHQVGSQS----LLGLTTTKENNVIIVCDS-------   69 (243)
Q Consensus         9 ~~~p~~i~~d~~g~l~~~~-~~------~~i~~~~~-~g~~~~~~~~~~~~----~~~i~~~~~g~l~~v~~~-------   69 (243)
                      ...|+.+...++| ||++. .+      ++|..+|. +.++.........+    . .+.+.++++.++++++       
T Consensus       137 ~s~Ph~~~~~pdG-i~Vs~~g~~~g~~~g~v~vlD~~T~~v~~~~~~~~~~~~~~Y-d~~~~p~~~~mvsS~wg~p~~~~  214 (462)
T 2ece_A          137 YSRLHTVHCGPDA-IYISALGNEEGEGPGGILMLDHYSFEPLGKWEIDRGDQYLAY-DFWWNLPNEVLVSSEWAVPNTIE  214 (462)
T ss_dssp             EEEEEEEEECSSC-EEEEEEEETTSCSCCEEEEECTTTCCEEEECCSBCTTCCCCC-CEEEETTTTEEEECBCCCHHHHT
T ss_pred             CCcccceeECCCe-EEEEcCCCcCCCCCCeEEEEECCCCeEEEEEccCCCCccccc-eEEECCCCCEEEEccCcCccccc
Confidence            4579999999999 88876 22      68999994 45544322222222    3 3666899998566642       


Q ss_pred             ------------CCcEEEEe-cCCcEEEEeccCCCcccCCccEEE--cCCCc-EEEEeCCCCCCcccccccccccCCCce
Q 026118           70 ------------QQGLLKVS-EEGVTVLVSQFNGSQLRFANDVIE--ASDGS-LYFTVSSTKFTPAEYYLDLVSGEPHGV  133 (243)
Q Consensus        70 ------------~~gl~~~~-~~g~~~~~~~~~~~~~~~~~~l~~--d~~G~-l~v~~~~~~~~~~~~~~~~~~~~~~g~  133 (243)
                                  .+.|..++ .++ +.+.....+.....|..|.+  +|+|+ +|++..            +.....++.
T Consensus       215 ~g~~~~~~~~~~~d~V~v~D~~~~-k~~~tI~vg~~g~~P~~i~f~~~Pdg~~aYV~~e------------~~~~~Lss~  281 (462)
T 2ece_A          215 DGLKLEHLKDRYGNRIHFWDLRKR-KRIHSLTLGEENRMALELRPLHDPTKLMGFINMV------------VSLKDLSSS  281 (462)
T ss_dssp             TCCCTTTHHHHSCCEEEEEETTTT-EEEEEEESCTTEEEEEEEEECSSTTCCEEEEEEE------------EETTTCCEE
T ss_pred             cccchhhhhhccCCEEEEEECCCC-cEeeEEecCCCCCccceeEeeECCCCCEEEEEEe------------eeccCCCce
Confidence                        35688888 555 22222111212235666666  88886 666632            000012345


Q ss_pred             EEEEeCCCCeeEEee----cc-----------------ccccceEEEcCCCCEEEEEEcCCCeEEEEEeecC-CCcceEE
Q 026118          134 LLKYDPSTNQTSLVL----DG-----------------LYFANGVALSEDERFLVVCESWKFRCVKHFLKVS-GRTDREI  191 (243)
Q Consensus       134 v~~~~~~~~~~~~~~----~~-----------------~~~~~gi~~~~dg~~l~v~~~~~~~i~~~~~~~~-~~~~~~~  191 (243)
                      |+.+..+.++++...    ..                 ...|.+|.+++||++||+++...+.|..|++++. .......
T Consensus       282 V~v~~~d~g~~~~~~vIdi~~~~v~~~lp~~~~~f~~~~~~pa~I~lS~DGrfLYVSnrg~d~VavfdV~d~~~~~lv~~  361 (462)
T 2ece_A          282 IWLWFYEDGKWNAEKVIEIPAEPLEGNLPEILKPFKAVPPLVTDIDISLDDKFLYLSLWGIGEVRQYDISNPFKPVLTGK  361 (462)
T ss_dssp             EEEEEEETTEEEEEEEEEECCEECCSSCCGGGGGGTEECCCCCCEEECTTSCEEEEEETTTTEEEEEECSSTTSCEEEEE
T ss_pred             EEEEEecCCceeEEEEEeCCCccccccccccccccccCCCceeEEEECCCCCEEEEEeCCCCEEEEEEecCCCCcEEEEE
Confidence            544333335433211    00                 2457899999999999999999999999998632 2222222


Q ss_pred             eccC-------------CCCCCCceEECCCCC-EEEEE
Q 026118          192 FIDN-------------LPGGPDNVNLARDGS-FWISI  215 (243)
Q Consensus       192 ~~~~-------------~~~~~~~i~~d~~G~-lwv~~  215 (243)
                      +..+             ..+.|.+++++++|+ ||+++
T Consensus       362 I~tGG~~~~~~~~~G~~~~ggPr~~~lSpDGk~LyVaN  399 (462)
T 2ece_A          362 VKLGGIFHRADHPAGHKLTGAPQMLEISRDGRRVYVTN  399 (462)
T ss_dssp             EECBTTTTCBCCTTSCCCCSCCCCEEECTTSSEEEEEC
T ss_pred             EEeCCeeccccccccccCCCCCCEEEEcCCCCEEEEEc
Confidence            2111             123699999999997 78766

>3nok_A Glutaminyl cyclase; beta-propeller, cyclotransferase, pyrogl transferase; HET: MES DDQ; 1.65A {Myxococcus xanthus}

Probab=99.24  E-value=2.1e-09  Score=83.61  Aligned_cols=149  Identities=20%  Similarity=0.228  Sum_probs=99.5

Q ss_pred             CcccEEEcCCCcEEEEe-CCCcEEEEcc-CCceeEecccCCccccceEEccCCCEEEEEeCCCcEEEEe-cCC--cEEEE
Q 026118           11 HPEDVSVDGNGVLYTAT-GDGWIKRMHP-NGTWEDWHQVGSQSLLGLTTTKENNVIIVCDSQQGLLKVS-EEG--VTVLV   85 (243)
Q Consensus        11 ~p~~i~~d~~g~l~~~~-~~~~i~~~~~-~g~~~~~~~~~~~~~~~i~~~~~g~l~~v~~~~~gl~~~~-~~g--~~~~~   85 (243)
                      ..++++++. ++||+.+ .++.++.+|+ +.+...-........ +++.  +|+.||+++....|..+| .+.  ...+.
T Consensus        97 FgeGit~~g-~~Ly~ltw~~~~v~V~D~~Tl~~~~ti~~~~eGw-GLt~--Dg~~L~vSdGs~~l~~iDp~T~~v~~~I~  172 (268)
T 3nok_A           97 FAEGLASDG-ERLYQLTWTEGLLFTWSGMPPQRERTTRYSGEGW-GLCY--WNGKLVRSDGGTMLTFHEPDGFALVGAVQ  172 (268)
T ss_dssp             CEEEEEECS-SCEEEEESSSCEEEEEETTTTEEEEEEECSSCCC-CEEE--ETTEEEEECSSSEEEEECTTTCCEEEEEE
T ss_pred             ceeEEEEeC-CEEEEEEccCCEEEEEECCcCcEEEEEeCCCcee-EEec--CCCEEEEECCCCEEEEEcCCCCeEEEEEE
Confidence            346687764 4899988 6778999994 555443223334445 6664  455559998766789999 454  33333


Q ss_pred             eccCCCcccCCccEEEcCCCcEEEEeCCCCCCcccccccccccCCCceEEEEeCCCCeeEEeec--------------cc
Q 026118           86 SQFNGSQLRFANDVIEASDGSLYFTVSSTKFTPAEYYLDLVSGEPHGVLLKYDPSTNQTSLVLD--------------GL  151 (243)
Q Consensus        86 ~~~~~~~~~~~~~l~~d~~G~l~v~~~~~~~~~~~~~~~~~~~~~~g~v~~~~~~~~~~~~~~~--------------~~  151 (243)
                      ....+.+...++.|.+. +|++|+....                 .+.|.++|++++++.....              ..
T Consensus       173 V~~~g~~v~~lNeLe~~-dG~lyanvw~-----------------s~~I~vIDp~TG~V~~~Idl~~L~~~~~~~~~~~~  234 (268)
T 3nok_A          173 VKLRGQPVELINELECA-NGVIYANIWH-----------------SSDVLEIDPATGTVVGVIDASALTRAVAGQVTNPE  234 (268)
T ss_dssp             CEETTEECCCEEEEEEE-TTEEEEEETT-----------------CSEEEEECTTTCBEEEEEECHHHHHHHTTTCCCTT
T ss_pred             eCCCCcccccccccEEe-CCEEEEEECC-----------------CCeEEEEeCCCCcEEEEEECCCCcccccccccCcC
Confidence            33344445566777765 8899987532                 3589999999998765321              11


Q ss_pred             cccceEEEcCCCCEEEEEEcCCCeEEEEEe
Q 026118          152 YFANGVALSEDERFLVVCESWKFRCVKHFL  181 (243)
Q Consensus       152 ~~~~gi~~~~dg~~l~v~~~~~~~i~~~~~  181 (243)
                      ..+||||++++++.|||+.-.=..++.+.+
T Consensus       235 ~vlNGIA~dp~~~rlfVTGK~Wp~~~ev~~  264 (268)
T 3nok_A          235 AVLNGIAVEPGSGRIFMTGKLWPRLFEVRL  264 (268)
T ss_dssp             CCEEEEEECTTTCCEEEEETTCSEEEEEEE
T ss_pred             CceEEEEEcCCCCEEEEeCCCCCceEEEEE
Confidence            367999999998889999754456776654

>3nol_A Glutamine cyclotransferase; beta-propeller, glutaminyl cyclase, pyrogl transferase; 1.70A {Zymomonas mobilis} PDB: 3nom_A

Probab=99.23  E-value=2.8e-09  Score=82.83  Aligned_cols=150  Identities=19%  Similarity=0.190  Sum_probs=99.9

Q ss_pred             CcccEEEcCCCcEEEEe-CCCcEEEEcc-CCceeEecccCCccccceEEccCCCEEEEEeCCCcEEEEe-cCC--cEEEE
Q 026118           11 HPEDVSVDGNGVLYTAT-GDGWIKRMHP-NGTWEDWHQVGSQSLLGLTTTKENNVIIVCDSQQGLLKVS-EEG--VTVLV   85 (243)
Q Consensus        11 ~p~~i~~d~~g~l~~~~-~~~~i~~~~~-~g~~~~~~~~~~~~~~~i~~~~~g~l~~v~~~~~gl~~~~-~~g--~~~~~   85 (243)
                      ..++|+++. ++||+.+ .++.++.+|+ +.+...-........ +++.  +|+.||+++....|..+| .+.  ...+.
T Consensus        88 FgeGit~~g-~~ly~ltw~~~~v~v~D~~t~~~~~ti~~~~eG~-glt~--dg~~L~~SdGs~~i~~iDp~T~~v~~~I~  163 (262)
T 3nol_A           88 FGEGISDWK-DKIVGLTWKNGLGFVWNIRNLRQVRSFNYDGEGW-GLTH--NDQYLIMSDGTPVLRFLDPESLTPVRTIT  163 (262)
T ss_dssp             CEEEEEEET-TEEEEEESSSSEEEEEETTTCCEEEEEECSSCCC-CEEE--CSSCEEECCSSSEEEEECTTTCSEEEEEE
T ss_pred             ceeEEEEeC-CEEEEEEeeCCEEEEEECccCcEEEEEECCCCce-EEec--CCCEEEEECCCCeEEEEcCCCCeEEEEEE
Confidence            346677764 4899998 5778999994 555443222233334 5554  455449988666799999 444  33333


Q ss_pred             eccCCCcccCCccEEEcCCCcEEEEeCCCCCCcccccccccccCCCceEEEEeCCCCeeEEeecc-------------cc
Q 026118           86 SQFNGSQLRFANDVIEASDGSLYFTVSSTKFTPAEYYLDLVSGEPHGVLLKYDPSTNQTSLVLDG-------------LY  152 (243)
Q Consensus        86 ~~~~~~~~~~~~~l~~d~~G~l~v~~~~~~~~~~~~~~~~~~~~~~g~v~~~~~~~~~~~~~~~~-------------~~  152 (243)
                      ....+.+...++.+.+. +|++|+....                 .+.|+++|++++++.....-             ..
T Consensus       164 V~~~g~~~~~lNELe~~-~G~lyan~w~-----------------~~~I~vIDp~tG~V~~~Id~~~L~~~~~~~~~~~~  225 (262)
T 3nol_A          164 VTAHGEELPELNELEWV-DGEIFANVWQ-----------------TNKIVRIDPETGKVTGIIDLNGILAEAGPLPSPID  225 (262)
T ss_dssp             CEETTEECCCEEEEEEE-TTEEEEEETT-----------------SSEEEEECTTTCBEEEEEECTTGGGGSCSCCSSCC
T ss_pred             eccCCccccccceeEEE-CCEEEEEEcc-----------------CCeEEEEECCCCcEEEEEECCcCccccccccCcCC
Confidence            32334445566677665 7899987532                 45899999999987654321             13


Q ss_pred             ccceEEEcCCCCEEEEEEcCCCeEEEEEee
Q 026118          153 FANGVALSEDERFLVVCESWKFRCVKHFLK  182 (243)
Q Consensus       153 ~~~gi~~~~dg~~l~v~~~~~~~i~~~~~~  182 (243)
                      .+||||++|+++.|||+.-.=..++.+.+.
T Consensus       226 vlNGIA~dp~~~~lfVTGK~Wp~~~ev~~~  255 (262)
T 3nol_A          226 VLNGIAWDKEHHRLFVTGKLWPKVFEITLT  255 (262)
T ss_dssp             CEEEEEEETTTTEEEEEETTCSEEEEEEEE
T ss_pred             ceEEEEEcCCCCEEEEECCCCCceEEEEEe
Confidence            579999999999999997644677776654

>1nir_A Nitrite reductase; hemoprotein, denitrification, domain swapping; HET: HEC DHE; 2.15A {Pseudomonas aeruginosa} SCOP: a.3.1.2 b.70.2.1 PDB: 1bl9_A* 1n15_A* 1n50_A* 1n90_A* 1gjq_A* 1nno_A* 1hzv_A* 1hzu_A*

Probab=99.23  E-value=1.2e-09  Score=94.65  Aligned_cols=186  Identities=11%  Similarity=0.092  Sum_probs=118.0

Q ss_pred             cccEEEcCCC-cEEEEeCCCcEEEEcc---CCceeEecccCCccccceEEcc----CCCEEEEEeC-CCcEEEEe-cCC-
Q 026118           12 PEDVSVDGNG-VLYTATGDGWIKRMHP---NGTWEDWHQVGSQSLLGLTTTK----ENNVIIVCDS-QQGLLKVS-EEG-   80 (243)
Q Consensus        12 p~~i~~d~~g-~l~~~~~~~~i~~~~~---~g~~~~~~~~~~~~~~~i~~~~----~g~l~~v~~~-~~gl~~~~-~~g-   80 (243)
                      |.+++++++| .||+++.++.|..+|.   +++..........|. ++++++    +|+++|+++. ...+..+| .++ 
T Consensus       181 ~~~v~~spdg~~l~v~~~d~~V~v~D~~~~t~~~~~~i~~g~~p~-~va~sp~~~~dg~~l~v~~~~~~~v~v~D~~t~~  259 (543)
T 1nir_A          181 VHISRMSASGRYLLVIGRDARIDMIDLWAKEPTKVAEIKIGIEAR-SVESSKFKGYEDRYTIAGAYWPPQFAIMDGETLE  259 (543)
T ss_dssp             EEEEEECTTSCEEEEEETTSEEEEEETTSSSCEEEEEEECCSEEE-EEEECCSTTCTTTEEEEEEEESSEEEEEETTTCC
T ss_pred             cceEEECCCCCEEEEECCCCeEEEEECcCCCCcEEEEEecCCCcc-eEEeCCCcCCCCCEEEEEEccCCeEEEEeccccc
Confidence            7889999988 5888887799999996   343332222345677 999999    9998899885 35677888 555 


Q ss_pred             -cEEEEecc---CC---CcccCCccEEEcCCCcEEEEeCCCCCCcccccccccccCCCceEEEEeCCCCeeEE--eeccc
Q 026118           81 -VTVLVSQF---NG---SQLRFANDVIEASDGSLYFTVSSTKFTPAEYYLDLVSGEPHGVLLKYDPSTNQTSL--VLDGL  151 (243)
Q Consensus        81 -~~~~~~~~---~~---~~~~~~~~l~~d~~G~l~v~~~~~~~~~~~~~~~~~~~~~~g~v~~~~~~~~~~~~--~~~~~  151 (243)
                       ...+....   ..   .+...+.++++++++..++...                ...+.|+.+|..+.+...  .....
T Consensus       260 ~~~~i~~~g~~~~~~~~~~~~~v~~i~~s~~~~~~~vs~----------------~~~g~i~vvd~~~~~~l~~~~i~~~  323 (543)
T 1nir_A          260 PKQIVSTRGMTVDTQTYHPEPRVAAIIASHEHPEFIVNV----------------KETGKVLLVNYKDIDNLTVTSIGAA  323 (543)
T ss_dssp             EEEEEECCEECSSSCCEESCCCEEEEEECSSSSEEEEEE----------------TTTTEEEEEECTTSSSCEEEEEECC
T ss_pred             cceeecccCcccCccccccCCceEEEEECCCCCEEEEEE----------------CCCCeEEEEEecCCCcceeEEeccC
Confidence             33332211   00   0112456788899776544422                134689999887543221  12234


Q ss_pred             cccceEEEcCCCCEEEEEEcCCCeEEEEEeecCCCcceEEeccCCCCCC-CceE-ECCC-CCEEEEEe
Q 026118          152 YFANGVALSEDERFLVVCESWKFRCVKHFLKVSGRTDREIFIDNLPGGP-DNVN-LARD-GSFWISII  216 (243)
Q Consensus       152 ~~~~gi~~~~dg~~l~v~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~-~~i~-~d~~-G~lwv~~~  216 (243)
                      ..+.+++|+|+|+++|++...++.|..+|...+.+.  ..+.......| .+.. .+++ |.+|++..
T Consensus       324 ~~~~~~~~spdg~~l~va~~~~~~v~v~D~~tg~l~--~~i~~g~~ph~g~g~~~~~p~~g~~~~s~~  389 (543)
T 1nir_A          324 PFLHDGGWDSSHRYFMTAANNSNKVAVIDSKDRRLS--ALVDVGKTPHPGRGANFVHPKYGPVWSTSH  389 (543)
T ss_dssp             SSCCCEEECTTSCEEEEEEGGGTEEEEEETTTTEEE--EEEECSSSBCCTTCEEEEETTTEEEEEEEB
T ss_pred             cCccCceECCCCCEEEEEecCCCeEEEEECCCCeEE--EeeccCCCCCCCCCcccCCCCCccEEEecc
Confidence            568899999999999999888889999997654221  22211111122 2333 3565 67888765

>3c75_H MADH, methylamine dehydrogenase heavy chain; copper proteins, electron transfer complex, TTQ, electron transport, oxidoreductase, periplasm, transport, metal- binding; HET: TRQ; 2.50A {Paracoccus versutus}

Probab=99.22  E-value=1.3e-09  Score=91.21  Aligned_cols=200  Identities=13%  Similarity=0.071  Sum_probs=114.7

Q ss_pred             CCcccEEEcCCC-cEEEEeC----------CCcEEEEc-cCCceeE-eccc-------CCccccceEEccCCCEEEEEeC
Q 026118           10 NHPEDVSVDGNG-VLYTATG----------DGWIKRMH-PNGTWED-WHQV-------GSQSLLGLTTTKENNVIIVCDS   69 (243)
Q Consensus        10 ~~p~~i~~d~~g-~l~~~~~----------~~~i~~~~-~~g~~~~-~~~~-------~~~~~~~i~~~~~g~l~~v~~~   69 (243)
                      ..| +|++++|| .||+++.          ++.|..+| .++++.. +...       ...|. ++++++||+.+|+++.
T Consensus       119 ~~P-gia~SpDgk~lyVan~~~~~~~~G~~~~~VsviD~~t~~vv~~I~v~g~~r~~~g~~P~-~~~~spDGk~lyV~n~  196 (426)
T 3c75_H          119 FLP-HPVAAEDGSFFAQASTVFERIARGKRTDYVEVFDPVTFLPIADIELPDAPRFLVGTYQW-MNALTPDNKNLLFYQF  196 (426)
T ss_dssp             SSC-EEEECTTSSCEEEEEEEEEETTEEEEEEEEEEECTTTCCEEEEEEETTCCCCCBSCCGG-GSEECTTSSEEEEEEC
T ss_pred             CCC-ceEECCCCCEEEEEeccccccccCCCCCEEEEEECCCCcEEEEEECCCccccccCCCcc-eEEEcCCCCEEEEEec
Confidence            358 99999988 6999872          45789999 3555433 3222       24577 9999999998899985


Q ss_pred             C--CcEEEEe-cCC--cEEEEeccCCCcccCCcc----EEEcCCCcEEEEeCCCC---------CCccccc---------
Q 026118           70 Q--QGLLKVS-EEG--VTVLVSQFNGSQLRFAND----VIEASDGSLYFTVSSTK---------FTPAEYY---------  122 (243)
Q Consensus        70 ~--~gl~~~~-~~g--~~~~~~~~~~~~~~~~~~----l~~d~~G~l~v~~~~~~---------~~~~~~~---------  122 (243)
                      .  ..|..+| .++  ...+..  .+.....+.+    +...++|++.+.+...+         +......         
T Consensus       197 ~~~~~VsVID~~t~kvv~~I~v--~g~~~~~p~g~~~~v~~~~dG~~~~V~~~~~~v~~~~~~~~~v~~~p~~~~~~~~~  274 (426)
T 3c75_H          197 SPAPAVGVVDLEGKTFDRMLDV--PDCYHIFPASPTVFYMNCRDGSLARVDFADGETKVTNTEVFHTEDELLINHPAFSL  274 (426)
T ss_dssp             SSSCEEEEEETTTTEEEEEEEC--CSEEEEEEEETTEEEEEETTSSEEEEECCTTCCEEEECCCCSCTTSCBCSCCEECT
T ss_pred             CCCCeEEEEECCCCeEEEEEEc--CCceeeccCCCcEEEEEcCCCCEEEEECCCCcEEEEeeeeeccCCCceeeEeeecC
Confidence            3  4588999 665  222221  1100111222    45667777554443211         0000000         


Q ss_pred             --ccccccCCCceEEEEeCCCCeeEEeec----------cccccce---EEEcCCCCEEEEEEcC---------CCeEEE
Q 026118          123 --LDLVSGEPHGVLLKYDPSTNQTSLVLD----------GLYFANG---VALSEDERFLVVCESW---------KFRCVK  178 (243)
Q Consensus       123 --~~~~~~~~~g~v~~~~~~~~~~~~~~~----------~~~~~~g---i~~~~dg~~l~v~~~~---------~~~i~~  178 (243)
                        ..+......+.|+.+|..+.....+..          ....|.+   ++++++++.+|++...         .+.|..
T Consensus       275 dg~~~~~~s~~g~V~ViD~~~~~~~v~~~~~~~~~~~i~~g~~p~g~~~va~s~dg~rlyVa~~~~~~gthk~~s~~VsV  354 (426)
T 3c75_H          275 RSGRLVWPTYTGKIFQADLTAEGATFRAPIEALTEAERADDWRPGGWQQTAYHRQSDRIYLLVDQRDEWKHKAASRFVVV  354 (426)
T ss_dssp             TTCEEEEEBTTSEEEEEEECSSCEEECCCEESSCTTTGGGTEEECSSSCEEEEGGGTEEEEEEEECCTTCTTSCEEEEEE
T ss_pred             CCCEEEEEeCCCcEEEEeccCCceEEeeeeeeccccccccccccCCceeeEEcCCCCEEEEEecccccccccCCCCEEEE
Confidence              000001123467777775443322110          0112334   8999999999999642         357999


Q ss_pred             EEeecCCCcceEEeccCCCCCCCceEECCCCC-EEEEEec
Q 026118          179 HFLKVSGRTDREIFIDNLPGGPDNVNLARDGS-FWISIIK  217 (243)
Q Consensus       179 ~~~~~~~~~~~~~~~~~~~~~~~~i~~d~~G~-lwv~~~~  217 (243)
                      +|....+  ....+.  ....|.+|+++++|+ +++..+.
T Consensus       355 ID~~T~k--vv~~I~--vg~~P~gia~spDg~~~lyv~n~  390 (426)
T 3c75_H          355 LNAETGE--RINKIE--LGHEIDSINVSQDAEPLLYALSA  390 (426)
T ss_dssp             EETTTCC--EEEEEE--EEEEECEEEECCSSSCEEEEEET
T ss_pred             EECCCCe--EEEEEE--CCCCcCeEEEccCCCEEEEEEcC
Confidence            9976532  222221  233699999999998 6665654

>3das_A Putative oxidoreductase; aldose sugar dehydrogenase, beta propellor, PQQ, SGDH; HET: MSE ARA PQQ; 1.60A {Streptomyces coelicolor}

Probab=99.20  E-value=1.7e-09  Score=88.08  Aligned_cols=157  Identities=10%  Similarity=0.054  Sum_probs=102.4

Q ss_pred             EecccCCccccceEEccCCCEEEEEeC-CCcEEEEe-cCC-cEEEEec--cCCCcccCCccEEEcCC----CcEEEEeCC
Q 026118           43 DWHQVGSQSLLGLTTTKENNVIIVCDS-QQGLLKVS-EEG-VTVLVSQ--FNGSQLRFANDVIEASD----GSLYFTVSS  113 (243)
Q Consensus        43 ~~~~~~~~~~~~i~~~~~g~l~~v~~~-~~gl~~~~-~~g-~~~~~~~--~~~~~~~~~~~l~~d~~----G~l~v~~~~  113 (243)
                      .+......|. +|++.++|++ ||+.. .+.|++++ .++ ...+...  ........+.+|+++|+    |.+|++.+.
T Consensus        26 ~va~gL~~P~-~ia~~pdG~l-lVter~~G~I~~v~~~~g~~~~v~~~~~v~~~g~~GllGia~~Pdf~~~g~lYv~yt~  103 (347)
T 3das_A           26 TVATGLNSPW-GLAPLPGGDL-LVSSRDEATITRVDAKTGRKTELGEVPGVSPSGEGGLLGIALSPDYASDHMVYAYFTS  103 (347)
T ss_dssp             EEECCCSSEE-EEEECTTSCE-EEEETTTCEEEEECTTTCCEEEEEECTTCCCBTTBSEEEEEECTTHHHHCEEEEEEEC
T ss_pred             EeecCCCCce-EEEEcCCCcE-EEEEecCCEEEEEECCCCcEeeecccCceeecCCCCceeeEeccccccCCEEEEEEec
Confidence            3444456788 9999999998 99987 45688888 456 4444321  11222456789999985    789987321


Q ss_pred             CCCCcccccccccccCCCceEEEEeCCCC--------eeEEeec-----cccccceEEEcCCCCEEEEEEc---------
Q 026118          114 TKFTPAEYYLDLVSGEPHGVLLKYDPSTN--------QTSLVLD-----GLYFANGVALSEDERFLVVCES---------  171 (243)
Q Consensus       114 ~~~~~~~~~~~~~~~~~~g~v~~~~~~~~--------~~~~~~~-----~~~~~~gi~~~~dg~~l~v~~~---------  171 (243)
                                     ...++|+|+..+.+        +.+.+..     .......|+|++||+ ||++.-         
T Consensus       104 ---------------~~~~~v~R~~~~~~~~~~~~~~~~~~i~~~~p~~~~H~g~~l~fgpDG~-Lyvt~Gd~~~~~~~q  167 (347)
T 3das_A          104 ---------------ASDNRIVRMLYDEKKPSGEQLGAPDTVFRGIPKGVIHNGGRIAFGPDKM-LYAGTGESGDTGLSQ  167 (347)
T ss_dssp             ---------------SSSEEEEEEEBCTTSCTTCCBCCCEEEEEEECCCSSCCCCCEEECTTSC-EEEECBCTTCGGGTT
T ss_pred             ---------------CCCCEEEEEEeCCCCcccccCCCcEEEEEcCCCCCCccCccccCCCCCC-EEEEECCCCCCcccc
Confidence                           12357888876541        1233222     122356799999997 999842         


Q ss_pred             ----CCCeEEEEEeecC-----CCcceEEeccCCCCCCCceEECCCCCEEEEEecC
Q 026118          172 ----WKFRCVKHFLKVS-----GRTDREIFIDNLPGGPDNVNLARDGSFWISIIKM  218 (243)
Q Consensus       172 ----~~~~i~~~~~~~~-----~~~~~~~~~~~~~~~~~~i~~d~~G~lwv~~~~~  218 (243)
                          ..+.|+|+++++.     .+...+++..+. .-|.+|++|++|+||++.++.
T Consensus       168 d~~~~~G~IlRi~~dG~ip~~nPf~~~~i~a~G~-RNp~Gla~dp~G~L~~~d~g~  222 (347)
T 3das_A          168 DRKSLGGKILRMTPDGEPAPGNPFPGSPVYSYGH-RNVQGLAWDDKQRLFASEFGQ  222 (347)
T ss_dssp             CTTCSTTCEEEECTTSSBCTTCSSTTCCEEEBCC-SBCCEEEECTTCCEEEEECCS
T ss_pred             CCCCCCCEEEEEeCCCCccCCCCCCCCeEEeeCC-CCcceEEECCCCCEEEEecCC
Confidence                3578999998753     111234554322 248899999999999999764

>3bws_A Protein LP49; two-domain, immunoglobulin-like, 7-bladed beta propeller, unknown function; 1.99A {Leptospira interrogans}

Probab=99.18  E-value=4.2e-09  Score=87.94  Aligned_cols=187  Identities=12%  Similarity=0.110  Sum_probs=123.3

Q ss_pred             CcccEEEcCCCcEEEEe-CCCcEEEEcc-CCcee-EecccCCccccceEEccCCCEEEEEeCC-CcEEEEe-cCC-cEEE
Q 026118           11 HPEDVSVDGNGVLYTAT-GDGWIKRMHP-NGTWE-DWHQVGSQSLLGLTTTKENNVIIVCDSQ-QGLLKVS-EEG-VTVL   84 (243)
Q Consensus        11 ~p~~i~~d~~g~l~~~~-~~~~i~~~~~-~g~~~-~~~~~~~~~~~~i~~~~~g~l~~v~~~~-~gl~~~~-~~g-~~~~   84 (243)
                      ...++++.++|.+|++. .++.|..++. .++.. .+......+. +++++++|+.++++... +.|..++ .++ ....
T Consensus       171 ~v~~~~~~~~~~~~~s~~~d~~v~~~d~~~~~~~~~~~~~~~~~~-~~~~~~~~~~l~~~~~~~~~i~~~d~~~~~~~~~  249 (433)
T 3bws_A          171 FVETISIPEHNELWVSQMQANAVHVFDLKTLAYKATVDLTGKWSK-ILLYDPIRDLVYCSNWISEDISVIDRKTKLEIRK  249 (433)
T ss_dssp             EEEEEEEGGGTEEEEEEGGGTEEEEEETTTCCEEEEEECSSSSEE-EEEEETTTTEEEEEETTTTEEEEEETTTTEEEEE
T ss_pred             ceeEEEEcCCCEEEEEECCCCEEEEEECCCceEEEEEcCCCCCee-EEEEcCCCCEEEEEecCCCcEEEEECCCCcEEEE
Confidence            34568888889888776 6788999984 44433 3322233456 89999999976777643 4578888 566 2221


Q ss_pred             EeccCCCcccCCccEEEcCCCc-EEEEeCCCCCCcccccccccccCCCceEEEEeCCCCeeEEeeccccccceEEEcCCC
Q 026118           85 VSQFNGSQLRFANDVIEASDGS-LYFTVSSTKFTPAEYYLDLVSGEPHGVLLKYDPSTNQTSLVLDGLYFANGVALSEDE  163 (243)
Q Consensus        85 ~~~~~~~~~~~~~~l~~d~~G~-l~v~~~~~~~~~~~~~~~~~~~~~~g~v~~~~~~~~~~~~~~~~~~~~~gi~~~~dg  163 (243)
                      .   ..  ...+.+++++++|+ +|++.....          ......+.|+.+|..+++..........+.++++++++
T Consensus       250 ~---~~--~~~~~~~~~~~~g~~l~~~~~~~~----------~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~g  314 (433)
T 3bws_A          250 T---DK--IGLPRGLLLSKDGKELYIAQFSAS----------NQESGGGRLGIYSMDKEKLIDTIGPPGNKRHIVSGNTE  314 (433)
T ss_dssp             C---CC--CSEEEEEEECTTSSEEEEEEEESC----------TTCSCCEEEEEEETTTTEEEEEEEEEECEEEEEECSST
T ss_pred             e---cC--CCCceEEEEcCCCCEEEEEECCCC----------ccccCCCeEEEEECCCCcEEeeccCCCCcceEEECCCC
Confidence            1   11  13477899999986 555532100          00012468999999888766554334467889999999


Q ss_pred             CEEEEEEcCCCeEEEEEeecCCCcceEEeccCCCCCCCceEECCCCC-EEEEEec
Q 026118          164 RFLVVCESWKFRCVKHFLKVSGRTDREIFIDNLPGGPDNVNLARDGS-FWISIIK  217 (243)
Q Consensus       164 ~~l~v~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~i~~d~~G~-lwv~~~~  217 (243)
                      +.+|++...++.|..|+.+....  ...+.  ....+..++++++|+ ||++...
T Consensus       315 ~~l~~~~~~~~~v~v~d~~~~~~--~~~~~--~~~~~~~~~~s~dg~~l~~~~~~  365 (433)
T 3bws_A          315 NKIYVSDMCCSKIEVYDLKEKKV--QKSIP--VFDKPNTIALSPDGKYLYVSCRG  365 (433)
T ss_dssp             TEEEEEETTTTEEEEEETTTTEE--EEEEE--CSSSEEEEEECTTSSEEEEEECC
T ss_pred             CEEEEEecCCCEEEEEECCCCcE--EEEec--CCCCCCeEEEcCCCCEEEEEecC
Confidence            98999988889999999864321  12221  234577899999997 7776654

>3mbr_X Glutamine cyclotransferase; beta-propeller; 1.44A {Xanthomonas campestris}

Probab=99.16  E-value=1.3e-08  Score=78.39  Aligned_cols=150  Identities=15%  Similarity=0.077  Sum_probs=99.9

Q ss_pred             CcccEEEcCCCcEEEEe-CCCcEEEEcc-CCceeEecccCCccccceEEccCCCEEEEEeCCCcEEEEe-cCC--cEEEE
Q 026118           11 HPEDVSVDGNGVLYTAT-GDGWIKRMHP-NGTWEDWHQVGSQSLLGLTTTKENNVIIVCDSQQGLLKVS-EEG--VTVLV   85 (243)
Q Consensus        11 ~p~~i~~d~~g~l~~~~-~~~~i~~~~~-~g~~~~~~~~~~~~~~~i~~~~~g~l~~v~~~~~gl~~~~-~~g--~~~~~   85 (243)
                      ..++++++. ++||+.+ .++.++.+|. +.+...-........ +++  .+++.||+++....|..+| .+.  ...+.
T Consensus        66 fgeGi~~~~-~~ly~ltw~~~~v~v~D~~tl~~~~ti~~~~~Gw-glt--~dg~~L~vSdgs~~l~~iDp~t~~~~~~I~  141 (243)
T 3mbr_X           66 FGAGIVAWR-DRLIQLTWRNHEGFVYDLATLTPRARFRYPGEGW-ALT--SDDSHLYMSDGTAVIRKLDPDTLQQVGSIK  141 (243)
T ss_dssp             CEEEEEEET-TEEEEEESSSSEEEEEETTTTEEEEEEECSSCCC-EEE--ECSSCEEEECSSSEEEEECTTTCCEEEEEE
T ss_pred             ceeEEEEeC-CEEEEEEeeCCEEEEEECCcCcEEEEEeCCCCce-EEe--eCCCEEEEECCCCeEEEEeCCCCeEEEEEE
Confidence            346777764 6899888 6788999994 555433222234444 555  4455449999767799999 454  33333


Q ss_pred             eccCCCcccCCccEEEcCCCcEEEEeCCCCCCcccccccccccCCCceEEEEeCCCCeeEEeec--------------cc
Q 026118           86 SQFNGSQLRFANDVIEASDGSLYFTVSSTKFTPAEYYLDLVSGEPHGVLLKYDPSTNQTSLVLD--------------GL  151 (243)
Q Consensus        86 ~~~~~~~~~~~~~l~~d~~G~l~v~~~~~~~~~~~~~~~~~~~~~~g~v~~~~~~~~~~~~~~~--------------~~  151 (243)
                      ....+.+...++.|... +|++|+....                 +..|.++|++++++.....              ..
T Consensus       142 V~~~g~~~~~lNeLe~~-~G~lyanvw~-----------------s~~I~vIDp~tG~V~~~idl~~l~~~~~~~~~~~~  203 (243)
T 3mbr_X          142 VTAGGRPLDNLNELEWV-NGELLANVWL-----------------TSRIARIDPASGKVVAWIDLQALVPDADALTDSTN  203 (243)
T ss_dssp             CEETTEECCCEEEEEEE-TTEEEEEETT-----------------TTEEEEECTTTCBEEEEEECGGGSTTTTSCCCTTS
T ss_pred             EccCCcccccceeeEEe-CCEEEEEECC-----------------CCeEEEEECCCCCEEEEEECCcCccccccccCCcC
Confidence            33344455566777654 7899987532                 3589999999998765321              12


Q ss_pred             cccceEEEcCCCCEEEEEEcCCCeEEEEEee
Q 026118          152 YFANGVALSEDERFLVVCESWKFRCVKHFLK  182 (243)
Q Consensus       152 ~~~~gi~~~~dg~~l~v~~~~~~~i~~~~~~  182 (243)
                      ..+||||++++++.|||+.-.=..++.+.+.
T Consensus       204 ~vlNGIA~d~~~~~lfVTGK~wp~~~~v~~~  234 (243)
T 3mbr_X          204 DVLNGIAFDAEHDRLFVTGKRWPMLYEIRLT  234 (243)
T ss_dssp             SCEEEEEEETTTTEEEEEETTCSEEEEEEEC
T ss_pred             CceEEEEEcCCCCEEEEECCCCCcEEEEEEe
Confidence            3579999999999999997644677777654

>2oiz_A Aromatic amine dehydrogenase, large subunit; oxidoreductase, tryptophan tryptophyl quinone, H-tunneling; HET: TRQ TSR PG4; 1.05A {Alcaligenes faecalis} PDB: 2agw_A* 2agx_A* 2agl_A* 2agz_A* 2ah0_A* 2ah1_A* 2hj4_A* 2hjb_A* 2i0t_A* 2iup_A* 2iuq_A* 2iur_A* 2iuv_A* 2agy_A* 2ok4_A* 2ok6_A* 2iaa_A* 2h47_A* 2h3x_A* 2hkr_A* ...

Probab=99.13  E-value=2.3e-08  Score=82.15  Aligned_cols=101  Identities=11%  Similarity=0.027  Sum_probs=67.2

Q ss_pred             cEEEcCCC-cEEEEeC-CCCCCcccccccccccCCCceEEEEeCCCCeeEEeeccccccceEEEcCCCCEEEEEEcCCCe
Q 026118           98 DVIEASDG-SLYFTVS-STKFTPAEYYLDLVSGEPHGVLLKYDPSTNQTSLVLDGLYFANGVALSEDERFLVVCESWKFR  175 (243)
Q Consensus        98 ~l~~d~~G-~l~v~~~-~~~~~~~~~~~~~~~~~~~g~v~~~~~~~~~~~~~~~~~~~~~gi~~~~dg~~l~v~~~~~~~  175 (243)
                      .++++++| ++|++.. ....+        ......+.|+.+|.++++......... |.+|+++|||++||+++.  +.
T Consensus       258 ~~a~~~dg~~lyv~~~~~~~~~--------~~~~~~~~v~viD~~t~~~v~~i~~~~-p~~ia~spdg~~l~v~n~--~~  326 (361)
T 2oiz_A          258 LVGLHRASGRMYVFMHPDGKEG--------THKFPAAEIWVMDTKTKQRVARIPGRD-ALSMTIDQQRNLMLTLDG--GN  326 (361)
T ss_dssp             CEEEETTTTEEEEEEESSCCTT--------CTTCCCSEEEEEETTTTEEEEEEECTT-CCEEEEETTTTEEEEECS--SC
T ss_pred             EEEEecCCCeEEEEEccCCCcc--------cccCCCceEEEEECCCCcEEEEEecCC-eeEEEECCCCCEEEEeCC--Ce
Confidence            47888874 5787743 10000        000123479999999887665443334 999999999999999874  89


Q ss_pred             EEEEEeecCCCcceEEeccCCCCCCCceEECCCCC
Q 026118          176 CVKHFLKVSGRTDREIFIDNLPGGPDNVNLARDGS  210 (243)
Q Consensus       176 i~~~~~~~~~~~~~~~~~~~~~~~~~~i~~d~~G~  210 (243)
                      |..||.....+.....+. .....|.+|+++++|+
T Consensus       327 v~v~D~~t~~l~~~~~i~-~~G~~P~~~~~~p~G~  360 (361)
T 2oiz_A          327 VNVYDISQPEPKLLRTIE-GAAEASLQVQFHPVGG  360 (361)
T ss_dssp             EEEEECSSSSCEEEEEET-TSCSSEEEEEECCCSC
T ss_pred             EEEEECCCCcceeeEEec-cCCCCcEEEEecCCCC
Confidence            999997764323333332 3345799999999985

>1cru_A Protein (soluble quinoprotein glucose dehydrogena; beta-propeller, superbarrel; HET: PQQ; 1.50A {Acinetobacter calcoaceticus} SCOP: b.68.2.1 PDB: 1c9u_A* 1cq1_A* 1qbi_A

Probab=99.13  E-value=2.2e-09  Score=90.96  Aligned_cols=169  Identities=11%  Similarity=0.060  Sum_probs=102.0

Q ss_pred             eeEecccCCccccceEEccCCCEEEEEeCCCc-EEEEe-cCC-cEEEEeccCC----CcccCCccEEEcC----CCcEEE
Q 026118           41 WEDWHQVGSQSLLGLTTTKENNVIIVCDSQQG-LLKVS-EEG-VTVLVSQFNG----SQLRFANDVIEAS----DGSLYF  109 (243)
Q Consensus        41 ~~~~~~~~~~~~~~i~~~~~g~l~~v~~~~~g-l~~~~-~~g-~~~~~~~~~~----~~~~~~~~l~~d~----~G~l~v  109 (243)
                      +..+......|. +|+++++|++ ||+....+ |++++ .+| ...+......    .....+.+|+++|    +|.||+
T Consensus        19 ~~~~a~~l~~P~-~~a~~pdG~l-~V~e~~gg~I~~~~~~~g~~~~~~~~~~~~~~~~g~~Gllgia~~Pdf~~~g~lYv   96 (454)
T 1cru_A           19 KKVILSNLNKPH-ALLWGPDNQI-WLTERATGKILRVNPESGSVKTVFQVPEIVNDADGQNGLLGFAFHPDFKNNPYIYI   96 (454)
T ss_dssp             EEEEECCCSSEE-EEEECTTSCE-EEEETTTCEEEEECTTTCCEEEEEECTTCCCCTTSSCSEEEEEECTTTTTSCEEEE
T ss_pred             EEEEECCCCCce-EEEEcCCCcE-EEEEcCCCEEEEEECCCCcEeEEecCCccccccCCCCceeEEEECCCcCcCCEEEE
Confidence            344444446788 9999999998 99987654 89998 456 4444332111    1124566899998    688999


Q ss_pred             EeCCCCCCcccccccccccCCCceEEEEeCCC--Cee---EEeec-----cccccceEEEcCCCCEEEEEEcC-------
Q 026118          110 TVSSTKFTPAEYYLDLVSGEPHGVLLKYDPST--NQT---SLVLD-----GLYFANGVALSEDERFLVVCESW-------  172 (243)
Q Consensus       110 ~~~~~~~~~~~~~~~~~~~~~~g~v~~~~~~~--~~~---~~~~~-----~~~~~~gi~~~~dg~~l~v~~~~-------  172 (243)
                      +.+...-...    + .......+|+|++.+.  +.+   +.+..     ....+.+|+|++||+ ||++.-.       
T Consensus        97 ~~s~~~~~~~----~-~~~~~~~~v~r~~~~~~~~~~~~~~~i~~~~p~~~~H~~~~l~f~pDG~-Lyv~~Gd~~~~~~~  170 (454)
T 1cru_A           97 SGTFKNPKST----D-KELPNQTIIRRYTYNKSTDTLEKPVDLLAGLPSSKDHQSGRLVIGPDQK-IYYTIGDQGRNQLA  170 (454)
T ss_dssp             EEEEECTTC-------CCSCEEEEEEEEEEETTTTEEEEEEEEEEEECCCSSCCEEEEEECTTSC-EEEEECCTTTTSGG
T ss_pred             EEeccccCCC----c-cccccccEEEEEEECCCCCCcCCcEEEEEcCCCCCCCCCCeEeECCCCe-EEEEECCCCCCCcc
Confidence            8532000000    0 0000134788876542  222   22221     123468899999998 9998431       


Q ss_pred             -------------------------CCeEEEEEeecCCC-c-------ceEEeccCCCCCCCceEECCCCCEEEEEecC
Q 026118          173 -------------------------KFRCVKHFLKVSGR-T-------DREIFIDNLPGGPDNVNLARDGSFWISIIKM  218 (243)
Q Consensus       173 -------------------------~~~i~~~~~~~~~~-~-------~~~~~~~~~~~~~~~i~~d~~G~lwv~~~~~  218 (243)
                                               .+.|+|+++++... .       ..+++..+ ..-|.+|++|++|+||++++..
T Consensus       171 ~~~~~~~~~~~p~~~~~~aq~~~~~~G~IlRi~~dG~ip~~Npf~~~~~~ei~a~G-~RNp~gla~dp~G~L~~~d~g~  248 (454)
T 1cru_A          171 YLFLPNQAQHTPTQQELNGKDYHTYMGKVLRLNLDGSIPKDNPSFNGVVSHIYTLG-HRNPQGLAFTPNGKLLQSEQGP  248 (454)
T ss_dssp             GTTSCCCTTCCCCHHHHHTTCCTTCSSEEEEECTTSCCCTTCCEETTEECSEEEBC-CSEEEEEEECTTSCEEEEEECS
T ss_pred             ccccccccccccccccccccCCCCCCeeEEEEeCCCCCCCCCCCCCCCcceEEEEC-CCCcceEEECCCCCEEEEecCC
Confidence                                     35799998765310 0       23444322 1247889999999999999753

>1qks_A Cytochrome CD1 nitrite reductase; enzyme, oxidoreductase, denitrification, electron transport, periplasmic; HET: HEC DHE; 1.28A {Paracoccus pantotrophus} SCOP: a.3.1.2 b.70.2.1 PDB: 1aof_A* 1aoq_A* 1aom_A* 1e2r_A* 1hj5_A* 1h9x_A* 1h9y_A* 1hcm_A* 1hj3_A* 1hj4_A* 1dy7_A* 1gq1_A*

Probab=99.13  E-value=1.5e-08  Score=88.21  Aligned_cols=190  Identities=13%  Similarity=0.102  Sum_probs=120.1

Q ss_pred             CCcccEEEcCCC-cEEEEeCCCcEEEEcc---CCceeEecccCCccccceEEc----cCCCEEEEEeCC-CcEEEEe-cC
Q 026118           10 NHPEDVSVDGNG-VLYTATGDGWIKRMHP---NGTWEDWHQVGSQSLLGLTTT----KENNVIIVCDSQ-QGLLKVS-EE   79 (243)
Q Consensus        10 ~~p~~i~~d~~g-~l~~~~~~~~i~~~~~---~g~~~~~~~~~~~~~~~i~~~----~~g~l~~v~~~~-~gl~~~~-~~   79 (243)
                      ..|+++++++|| .||+++.++.|..+|.   +++...-......|. +++++    +||+++|+++.. ..+..+| .+
T Consensus       197 ~~p~~v~~SpDGr~lyv~~~dg~V~viD~~~~t~~~v~~i~~G~~P~-~ia~s~~~~pDGk~l~v~n~~~~~v~ViD~~t  275 (567)
T 1qks_A          197 YAVHISRLSASGRYLFVIGRDGKVNMIDLWMKEPTTVAEIKIGSEAR-SIETSKMEGWEDKYAIAGAYWPPQYVIMDGET  275 (567)
T ss_dssp             SCEEEEEECTTSCEEEEEETTSEEEEEETTSSSCCEEEEEECCSEEE-EEEECCSTTCTTTEEEEEEEETTEEEEEETTT
T ss_pred             CCccceEECCCCCEEEEEcCCCeEEEEECCCCCCcEeEEEecCCCCc-eeEEccccCCCCCEEEEEEccCCeEEEEECCC
Confidence            368899999988 5899988889999995   444433333345678 99999    699988999865 4577778 55


Q ss_pred             C--cEEEEecc---CCC---cccCCccEEEcCCCcEEEEeCCCCCCcccccccccccCCCceEEEEeCCCCeeEEe--ec
Q 026118           80 G--VTVLVSQF---NGS---QLRFANDVIEASDGSLYFTVSSTKFTPAEYYLDLVSGEPHGVLLKYDPSTNQTSLV--LD  149 (243)
Q Consensus        80 g--~~~~~~~~---~~~---~~~~~~~l~~d~~G~l~v~~~~~~~~~~~~~~~~~~~~~~g~v~~~~~~~~~~~~~--~~  149 (243)
                      .  ...+....   .+.   +...+.++..++++..|+.+.                ...+.|+.+|........+  ..
T Consensus       276 ~~~~~~i~~~~~~~~~~~~~p~~rva~i~~s~~~~~~vv~~----------------~~~g~v~~vd~~~~~~~~v~~i~  339 (567)
T 1qks_A          276 LEPKKIQSTRGMTYDEQEYHPEPRVAAILASHYRPEFIVNV----------------KETGKILLVDYTDLNNLKTTEIS  339 (567)
T ss_dssp             CCEEEEEECCEECTTTCCEESCCCEEEEEECSSSSEEEEEE----------------TTTTEEEEEETTCSSEEEEEEEE
T ss_pred             CcEEEEEeccccccccccccCCCceEEEEEcCCCCEEEEEe----------------cCCCeEEEEecCCCccceeeeee
Confidence            4  33232211   110   011344677777766555432                1356899998865432211  22


Q ss_pred             cccccceEEEcCCCCEEEEEEcCCCeEEEEEeecCCCcceEEecc-CCCCCC-CceE-ECCC-CCEEEEEecC
Q 026118          150 GLYFANGVALSEDERFLVVCESWKFRCVKHFLKVSGRTDREIFID-NLPGGP-DNVN-LARD-GSFWISIIKM  218 (243)
Q Consensus       150 ~~~~~~gi~~~~dg~~l~v~~~~~~~i~~~~~~~~~~~~~~~~~~-~~~~~~-~~i~-~d~~-G~lwv~~~~~  218 (243)
                      ....+.++.|+++|+++|++...++.|..+|.....+.  ..+.- .....| .+.. ++++ |.+|+....+
T Consensus       340 ~~~~~~d~~~~pdgr~~~va~~~sn~V~ViD~~t~kl~--~~i~vgg~~Phpg~g~~~~~p~~g~v~~t~~~g  410 (567)
T 1qks_A          340 AERFLHDGGLDGSHRYFITAANARNKLVVIDTKEGKLV--AIEDTGGQTPHPGRGANFVHPTFGPVWATSHMG  410 (567)
T ss_dssp             CCSSEEEEEECTTSCEEEEEEGGGTEEEEEETTTTEEE--EEEECSSSSBCCTTCEEEEETTTEEEEEEEBSS
T ss_pred             ccccccCceECCCCCEEEEEeCCCCeEEEEECCCCcEE--EEEeccCcCCCCccceeeECCCCCcEEEeCCCC
Confidence            33567789999999999999988899999998754321  12211 111123 3444 4666 6789866544

>3no2_A Uncharacterized protein; six-bladed beta-propeller, structural genomics, joint center structural genomics, JCSG, protein structure initiative; HET: MSE CIT PEG; 1.35A {Bacteroides caccae}

Probab=99.13  E-value=1e-08  Score=81.19  Aligned_cols=171  Identities=10%  Similarity=0.001  Sum_probs=110.0

Q ss_pred             CCcEEEEeCCCcEEEEcc-CCceeEecccC--CccccceEEccCCCEEEEEeCCCcEEEEecCC-cEEEEeccCCCcccC
Q 026118           20 NGVLYTATGDGWIKRMHP-NGTWEDWHQVG--SQSLLGLTTTKENNVIIVCDSQQGLLKVSEEG-VTVLVSQFNGSQLRF   95 (243)
Q Consensus        20 ~g~l~~~~~~~~i~~~~~-~g~~~~~~~~~--~~~~~~i~~~~~g~l~~v~~~~~gl~~~~~~g-~~~~~~~~~~~~~~~   95 (243)
                      +..|+++..++.|+.+|+ +|++.......  ..+. +++++++|++ +++ ...+++.++++| ...-.....   ...
T Consensus         5 ~~~lv~~~~~~~v~~~d~~tG~~~w~~~~~~~~~~~-~~~~~pdG~i-lvs-~~~~V~~~d~~G~~~W~~~~~~---~~~   78 (276)
T 3no2_A            5 QHLLVGGSGWNKIAIINKDTKEIVWEYPLEKGWECN-SVAATKAGEI-LFS-YSKGAKMITRDGRELWNIAAPA---GCE   78 (276)
T ss_dssp             CEEEEECTTCSEEEEEETTTTEEEEEEECCTTCCCC-EEEECTTSCE-EEE-CBSEEEEECTTSCEEEEEECCT---TCE
T ss_pred             CcEEEeeCCCCEEEEEECCCCeEEEEeCCCccCCCc-CeEECCCCCE-EEe-CCCCEEEECCCCCEEEEEcCCC---Ccc
Confidence            334555557889999996 78765332221  1356 8899999998 664 467899999767 332222111   123


Q ss_pred             CccEEEcCCCcEEEEeCCCCCCcccccccccccCCCceEEEEeCCCCeeEEee--cc----ccccceEEEcCCCCEEEEE
Q 026118           96 ANDVIEASDGSLYFTVSSTKFTPAEYYLDLVSGEPHGVLLKYDPSTNQTSLVL--DG----LYFANGVALSEDERFLVVC  169 (243)
Q Consensus        96 ~~~l~~d~~G~l~v~~~~~~~~~~~~~~~~~~~~~~g~v~~~~~~~~~~~~~~--~~----~~~~~gi~~~~dg~~l~v~  169 (243)
                      +.++.+.++|++++++..                ..+.|+.+++++..+..+.  ..    ...+.+++++++|+ ++++
T Consensus        79 ~~~~~~~~dG~~lv~~~~----------------~~~~v~~vd~~Gk~l~~~~~~~~~~~~~~~~~~v~~~~~G~-~lv~  141 (276)
T 3no2_A           79 MQTARILPDGNALVAWCG----------------HPSTILEVNMKGEVLSKTEFETGIERPHAQFRQINKNKKGN-YLVP  141 (276)
T ss_dssp             EEEEEECTTSCEEEEEES----------------TTEEEEEECTTSCEEEEEEECCSCSSGGGSCSCCEECTTSC-EEEE
T ss_pred             ccccEECCCCCEEEEecC----------------CCCEEEEEeCCCCEEEEEeccCCCCcccccccCceECCCCC-EEEE
Confidence            456778899999998532                1357899998744333332  11    13456788899999 6677


Q ss_pred             EcCCCeEEEEEeecCCCcceEEeccCCCCCCCceEECCCCCEEEEEecC
Q 026118          170 ESWKFRCVKHFLKVSGRTDREIFIDNLPGGPDNVNLARDGSFWISIIKM  218 (243)
Q Consensus       170 ~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~i~~d~~G~lwv~~~~~  218 (243)
                      ...++.|..+|.++. .  ...+  .....|.+....++|+++++...+
T Consensus       142 ~~~~~~v~~~d~~G~-~--~w~~--~~~~~~~~~~~~~~g~~~v~~~~~  185 (276)
T 3no2_A          142 LFATSEVREIAPNGQ-L--LNSV--KLSGTPFSSAFLDNGDCLVACGDA  185 (276)
T ss_dssp             ETTTTEEEEECTTSC-E--EEEE--ECSSCCCEEEECTTSCEEEECBTT
T ss_pred             ecCCCEEEEECCCCC-E--EEEE--ECCCCccceeEcCCCCEEEEeCCC
Confidence            778899999997642 1  1122  223457778888888888876654

>1qks_A Cytochrome CD1 nitrite reductase; enzyme, oxidoreductase, denitrification, electron transport, periplasmic; HET: HEC DHE; 1.28A {Paracoccus pantotrophus} SCOP: a.3.1.2 b.70.2.1 PDB: 1aof_A* 1aoq_A* 1aom_A* 1e2r_A* 1hj5_A* 1h9x_A* 1h9y_A* 1hcm_A* 1hj3_A* 1hj4_A* 1dy7_A* 1gq1_A*

Probab=99.10  E-value=1.4e-08  Score=88.37  Aligned_cols=176  Identities=9%  Similarity=-0.081  Sum_probs=116.6

Q ss_pred             cCCCcEEEEe-CCCcEEEEc-cCCceeEecccCCccccceEEccCCCEEEEEeCCCcEEEEe-c--CCcEEEEeccCCCc
Q 026118           18 DGNGVLYTAT-GDGWIKRMH-PNGTWEDWHQVGSQSLLGLTTTKENNVIIVCDSQQGLLKVS-E--EGVTVLVSQFNGSQ   92 (243)
Q Consensus        18 d~~g~l~~~~-~~~~i~~~~-~~g~~~~~~~~~~~~~~~i~~~~~g~l~~v~~~~~gl~~~~-~--~g~~~~~~~~~~~~   92 (243)
                      |+.+.+|++. .++.|..+| .++++.........|. ++++++||+++|+++....|..+| .  ++ +.+.....+  
T Consensus       164 d~~~~~~V~~~~~~~V~viD~~t~~v~~~i~~g~~p~-~v~~SpDGr~lyv~~~dg~V~viD~~~~t~-~~v~~i~~G--  239 (567)
T 1qks_A          164 DLENLFSVTLRDAGQIALIDGSTYEIKTVLDTGYAVH-ISRLSASGRYLFVIGRDGKVNMIDLWMKEP-TTVAEIKIG--  239 (567)
T ss_dssp             CGGGEEEEEETTTTEEEEEETTTCCEEEEEECSSCEE-EEEECTTSCEEEEEETTSEEEEEETTSSSC-CEEEEEECC--
T ss_pred             CCCceEEEEeCCCCeEEEEECCCCeEEEEEeCCCCcc-ceEECCCCCEEEEEcCCCeEEEEECCCCCC-cEeEEEecC--
Confidence            4556788887 678899999 4555554333344677 999999999889998766799999 4  33 222222222  


Q ss_pred             ccCCccEEEc----CCCc-EEEEeCCCCCCcccccccccccCCCceEEEEeCCCCeeEEeecc------------ccccc
Q 026118           93 LRFANDVIEA----SDGS-LYFTVSSTKFTPAEYYLDLVSGEPHGVLLKYDPSTNQTSLVLDG------------LYFAN  155 (243)
Q Consensus        93 ~~~~~~l~~d----~~G~-l~v~~~~~~~~~~~~~~~~~~~~~~g~v~~~~~~~~~~~~~~~~------------~~~~~  155 (243)
                       ..|.+++++    |||+ +|+++.                 ..+.|..+|..+.+.......            .....
T Consensus       240 -~~P~~ia~s~~~~pDGk~l~v~n~-----------------~~~~v~ViD~~t~~~~~~i~~~~~~~~~~~~~p~~rva  301 (567)
T 1qks_A          240 -SEARSIETSKMEGWEDKYAIAGAY-----------------WPPQYVIMDGETLEPKKIQSTRGMTYDEQEYHPEPRVA  301 (567)
T ss_dssp             -SEEEEEEECCSTTCTTTEEEEEEE-----------------ETTEEEEEETTTCCEEEEEECCEECTTTCCEESCCCEE
T ss_pred             -CCCceeEEccccCCCCCEEEEEEc-----------------cCCeEEEEECCCCcEEEEEeccccccccccccCCCceE
Confidence             347799999    6886 777742                 235788889887765543211            11345


Q ss_pred             eEEEcCCCCEEEEEEcCCCeEEEEEeecCCCcceEEeccCCCCCCCceEECCCCC-EEEEEec
Q 026118          156 GVALSEDERFLVVCESWKFRCVKHFLKVSGRTDREIFIDNLPGGPDNVNLARDGS-FWISIIK  217 (243)
Q Consensus       156 gi~~~~dg~~l~v~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~i~~d~~G~-lwv~~~~  217 (243)
                      ++..++++..+++....++.|+.++...........+  ....++.++.+|++|+ +|++.+.
T Consensus       302 ~i~~s~~~~~~vv~~~~~g~v~~vd~~~~~~~~v~~i--~~~~~~~d~~~~pdgr~~~va~~~  362 (567)
T 1qks_A          302 AILASHYRPEFIVNVKETGKILLVDYTDLNNLKTTEI--SAERFLHDGGLDGSHRYFITAANA  362 (567)
T ss_dssp             EEEECSSSSEEEEEETTTTEEEEEETTCSSEEEEEEE--ECCSSEEEEEECTTSCEEEEEEGG
T ss_pred             EEEEcCCCCEEEEEecCCCeEEEEecCCCccceeeee--eccccccCceECCCCCEEEEEeCC
Confidence            7888888887777777789999998764321111111  2234678899999998 5666544

>2wg3_C Hedgehog-interacting protein; lipoprotein, development, membrane, secreted, protease, PALM hydrolase, developmental protein, autocatalytic cleavage; HET: NAG; 2.60A {Homo sapiens} PDB: 2wg4_B 2wfx_B 2wft_A 3ho3_A 3ho4_A 3ho5_A

Probab=99.08  E-value=2.3e-09  Score=90.84  Aligned_cols=167  Identities=17%  Similarity=0.254  Sum_probs=103.6

Q ss_pred             ceecccccCCcccEEEcCCC--cEEEEeCCCcEEEEccCCce-----eEecc--c-------CCccccceEEccC----C
Q 026118            2 IKLGEGIVNHPEDVSVDGNG--VLYTATGDGWIKRMHPNGTW-----EDWHQ--V-------GSQSLLGLTTTKE----N   61 (243)
Q Consensus         2 ~~~~~g~~~~p~~i~~d~~g--~l~~~~~~~~i~~~~~~g~~-----~~~~~--~-------~~~~~~~i~~~~~----g   61 (243)
                      ++++++ +..|.+|+++++|  +||++...|.|+++++++..     .....  .       ..... +|+++|+    +
T Consensus         7 ~~va~g-L~~P~~~a~~pdG~~rl~V~er~G~i~~~~~~g~~~~~~~~~~~~~~~~g~~~~~e~Gll-gia~~P~f~~n~   84 (463)
T 2wg3_C            7 QEVVSG-LRQPVGALHSGDGSQRLFILEKEGYVKILTPEGEIFKEPYLDIHKLVQSGIKGGDERGLL-SLAFHPNYKKNG   84 (463)
T ss_dssp             EEEEEE-ESSEEEEECCSSSSCCEEEEETTTEEEEECTTSCBCSSCSEECTTTBCCCCSSSCCCSEE-EEEECTTHHHHC
T ss_pred             EEeccC-CCCceEEEECCCCCeEEEEEeCCceEEEEeCCCCeeeeeecCCcceeccCccccCCCcce-eeEeCCCCcCCC
Confidence            567776 9999999999988  49999988999999865532     11111  0       12345 7999885    6


Q ss_pred             CEEEEEeCC-------------CcEEEEe-cC--------C-cEEEEeccCCCcccCCccEEEcCCCcEEEEeCCCCCCc
Q 026118           62 NVIIVCDSQ-------------QGLLKVS-EE--------G-VTVLVSQFNGSQLRFANDVIEASDGSLYFTVSSTKFTP  118 (243)
Q Consensus        62 ~l~~v~~~~-------------~gl~~~~-~~--------g-~~~~~~~~~~~~~~~~~~l~~d~~G~l~v~~~~~~~~~  118 (243)
                      .+ |++...             ..|.++. ..        . .+.+..............|+++|||.||++.-......
T Consensus        85 ~l-Yv~yt~~~~~~~~~~~~~~~~v~r~~~~~~~~~~~d~~~~~~i~~~~~~~~~H~g~~l~fgpDG~LYv~~Gd~~~~~  163 (463)
T 2wg3_C           85 KL-YVSYTTNQERWAIGPHDHILRVVEYTVSRKNPHQVDLRTARVFLEVAELHRKHLGGQLLFGPDGFLYIILGDGMITL  163 (463)
T ss_dssp             EE-EEEEEECCCSSCSSSSCEEEEEEEEEBCTTCTTSBCGGGCEEEEEEEESSSSSCEEEEEECTTSCEEEEECCTTCCH
T ss_pred             EE-EEEEeCCCCCcccCCcccceEEEEEEEcCCCCCccCCCCceEEEEcCCCCCcccCCcEeECCCCcEEEEeCCCCCCC
Confidence            66 887421             2566666 21        1 23333322222233456799999999999865421110


Q ss_pred             ccccccccccCCCceEEEEeCCCC--------------------eeEEeeccccccceEEEcCC-----CC-EEEEEEc
Q 026118          119 AEYYLDLVSGEPHGVLLKYDPSTN--------------------QTSLVLDGLYFANGVALSED-----ER-FLVVCES  171 (243)
Q Consensus       119 ~~~~~~~~~~~~~g~v~~~~~~~~--------------------~~~~~~~~~~~~~gi~~~~d-----g~-~l~v~~~  171 (243)
                      .............|+|+|+++++.                    ..+.++.++..|.+|+|+++     |+ ++|.++.
T Consensus       164 ~~~~~~q~~~~~~GkIlRi~~dg~~~~~~y~iP~dNPf~~~~~~~~eI~a~G~RNp~gla~dp~tg~~~G~l~~~~~D~  242 (463)
T 2wg3_C          164 DDMEEMDGLSDFTGSVLRLDVDTDMCNVPYSIPRSNPHFNSTNQPPEVFAHGLHDPGRCAVDRHPTDININLTILCSDS  242 (463)
T ss_dssp             HHHHHCTTCCSCTTEEEEEBCCCCCSSCSCBCCTTSTTTTCSSSCTTEEEECCSSCCBEEEESSCSSTTCSEEEEEECC
T ss_pred             CccccccCcCCCCeeEEEEECCCCcccccCcCCCCCCCcCCCCCcccEEEECCCCcceEEECCCCCCcccceEEEeccc
Confidence            000000112345689999999952                    23455667788999999997     44 4666653

>2p9w_A MAL S 1 allergenic protein; beta propeller; 1.35A {Malassezia sympodialis}

Probab=99.07  E-value=7.1e-09  Score=83.18  Aligned_cols=161  Identities=7%  Similarity=-0.042  Sum_probs=99.7

Q ss_pred             CccccceEEccCCCEEEEEeCC-CcEEEEecC-C-cEEEEeccC----CCcccCCccEEE---cCCCcEEEE-eCCCCCC
Q 026118           49 SQSLLGLTTTKENNVIIVCDSQ-QGLLKVSEE-G-VTVLVSQFN----GSQLRFANDVIE---ASDGSLYFT-VSSTKFT  117 (243)
Q Consensus        49 ~~~~~~i~~~~~g~l~~v~~~~-~gl~~~~~~-g-~~~~~~~~~----~~~~~~~~~l~~---d~~G~l~v~-~~~~~~~  117 (243)
                      ..|. +++.|+....||+++.. ..|.++++. + ...+ ....    +.+...+.+|.+   |++|+||++ +.+..|.
T Consensus        13 ~yPE-~~~wd~~~g~~~vs~l~~g~V~~~~~~~~~~~~~-~~~~~s~~g~~~~~~sGl~~~~~D~~grL~vv~~~~~af~   90 (334)
T 2p9w_A           13 LTPE-DTIYDRTRQVFYQSNLYKGRIEVYNPKTQSHFNV-VIDGASSNGDGEQQMSGLSLLTHDNSKRLFAVMKNAKSFN   90 (334)
T ss_dssp             CCCS-CEEEETTTTEEEEEETTTTEEEEECTTTCCEEEE-CCTTTCCSSCCSEEEEEEEESSSSSCCEEEEEEEETTTTC
T ss_pred             cCCc-CccCcCCCCEEEEEeccCCEEEEEcCCCCeEEEE-ecCCccccCCCcceeeEEEEeccCCCCcEEEEEccccccc
Confidence            4567 88998644444999954 568899954 5 4444 2111    233345679999   799999995 3221111


Q ss_pred             cccccccccccCCCceEEEEeCC---CCeeEEeec--------------cccccceEEEcCCCCEEEEEEcCC-CeEEEE
Q 026118          118 PAEYYLDLVSGEPHGVLLKYDPS---TNQTSLVLD--------------GLYFANGVALSEDERFLVVCESWK-FRCVKH  179 (243)
Q Consensus       118 ~~~~~~~~~~~~~~g~v~~~~~~---~~~~~~~~~--------------~~~~~~gi~~~~dg~~l~v~~~~~-~~i~~~  179 (243)
                      ....     .......|++||+.   +++......              ....+++|+++++|+ +||++... +.|+++
T Consensus        91 ~~g~-----~~~g~~~v~~~Dl~~~~tg~~~~~~dL~~~~~~~~~~~g~~~~~~nDvavD~~Gn-aYVt~s~~~~~I~rV  164 (334)
T 2p9w_A           91 FADQ-----SSHGASSFHSFNLPLSENSKPVWSVNFEKVQDEFEKKAGKRPFGVVQSAQDRDGN-SYVAFALGMPAIARV  164 (334)
T ss_dssp             TTSC-----CSSSCCEEEEEESSCCTTCCCSEEEESHHHHHHHHHHHSSCCEEEEEEEECTTSC-EEEEEEESSCEEEEE
T ss_pred             cccc-----ccCCCCEEEEEcCCcCCCCCEEEEecCccccccccccccccccCCceeEECCCCC-EEEeCCCCCCeEEEE
Confidence            1000     00124579999988   565443221              123589999999999 99998888 999999


Q ss_pred             EeecCCCcceEEecc--CCCCCCCceEECCCCCEEEEEec
Q 026118          180 FLKVSGRTDREIFID--NLPGGPDNVNLARDGSFWISIIK  217 (243)
Q Consensus       180 ~~~~~~~~~~~~~~~--~~~~~~~~i~~d~~G~lwv~~~~  217 (243)
                      ++++........-..  .....+.||+..++|++.+....
T Consensus       165 ~pdG~~~~~~~~~~~~~~~~~G~nGIv~~pdg~~Liv~~~  204 (334)
T 2p9w_A          165 SADGKTVSTFAWESGNGGQRPGYSGITFDPHSNKLIAFGG  204 (334)
T ss_dssp             CTTSCCEEEEEECCCCSSSCCSCSEEEEETTTTEEEEESS
T ss_pred             eCCCCEEeeeeecCCCcccccCcceEEEeCCCCEEEEEcC
Confidence            988742221111110  11124789999999986665544

>1pby_B Quinohemoprotein amine dehydrogenase 40 kDa subunit; oxidoreductase; HET: TRW HEM; 1.70A {Paracoccus denitrificans} SCOP: b.69.2.2 PDB: 1jju_B*

Probab=99.07  E-value=1.3e-08  Score=81.61  Aligned_cols=148  Identities=9%  Similarity=0.004  Sum_probs=94.1

Q ss_pred             EEEEeCCCcEEEEcc-CCceeEecccCC---ccccceEEccCCCEEEEEeCC-CcEEEEe-cCC-cE-EEEeccCCCccc
Q 026118           23 LYTATGDGWIKRMHP-NGTWEDWHQVGS---QSLLGLTTTKENNVIIVCDSQ-QGLLKVS-EEG-VT-VLVSQFNGSQLR   94 (243)
Q Consensus        23 l~~~~~~~~i~~~~~-~g~~~~~~~~~~---~~~~~i~~~~~g~l~~v~~~~-~gl~~~~-~~g-~~-~~~~~~~~~~~~   94 (243)
                      ++++..++.|..+|. +++.........   .+. +++++++|+.+|++... ..|..++ .++ .. .+..........
T Consensus         4 ~v~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~-~~~~s~dg~~l~v~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~   82 (337)
T 1pby_B            4 ILAPARPDKLVVIDTEKMAVDKVITIADAGPTPM-VPMVAPGGRIAYATVNKSESLVKIDLVTGETLGRIDLSTPEERVK   82 (337)
T ss_dssp             EEEEETTTEEEEEETTTTEEEEEEECTTCTTCCC-CEEECTTSSEEEEEETTTTEEEEEETTTCCEEEEEECCBTTEEEE
T ss_pred             EEEcCCCCeEEEEECCCCcEEEEEEcCCCCCCcc-ceEEcCCCCEEEEEeCCCCeEEEEECCCCCeEeeEEcCCcccccc
Confidence            444557788988984 555443322223   467 99999999865887754 4588888 566 32 222111000112


Q ss_pred             CCccEEEcCCCc-EEEEeCCCCCCccccccccccc-C--CCceEEEEeCCCCeeEEeeccccccceEEEcCCCCEEEEEE
Q 026118           95 FANDVIEASDGS-LYFTVSSTKFTPAEYYLDLVSG-E--PHGVLLKYDPSTNQTSLVLDGLYFANGVALSEDERFLVVCE  170 (243)
Q Consensus        95 ~~~~l~~d~~G~-l~v~~~~~~~~~~~~~~~~~~~-~--~~g~v~~~~~~~~~~~~~~~~~~~~~gi~~~~dg~~l~v~~  170 (243)
                      .+.+++++++|+ +|+++....         .... .  ..+.|+.+|.++++..........+.+++++|+|++||++ 
T Consensus        83 ~~~~~~~s~dg~~l~~~~~~~~---------~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~-  152 (337)
T 1pby_B           83 SLFGAALSPDGKTLAIYESPVR---------LELTHFEVQPTRVALYDAETLSRRKAFEAPRQITMLAWARDGSKLYGL-  152 (337)
T ss_dssp             CTTCEEECTTSSEEEEEEEEEE---------ECSSCEEECCCEEEEEETTTTEEEEEEECCSSCCCEEECTTSSCEEEE-
T ss_pred             cccceEECCCCCEEEEEecccc---------cccccccccCceEEEEECCCCcEEEEEeCCCCcceeEECCCCCEEEEe-
Confidence            577899999995 677641100         0000 0  2368999999888766554445568899999999989988 


Q ss_pred             cCCCeEEEEEeec
Q 026118          171 SWKFRCVKHFLKV  183 (243)
Q Consensus       171 ~~~~~i~~~~~~~  183 (243)
                        ++.|+.++...
T Consensus       153 --~~~i~~~d~~~  163 (337)
T 1pby_B          153 --GRDLHVMDPEA  163 (337)
T ss_dssp             --SSSEEEEETTT
T ss_pred             --CCeEEEEECCC
Confidence              36799998764

>2hqs_A Protein TOLB; TOLB, PAL, TOL, transport protein-lipoprotein complex; 1.50A {Escherichia coli} SCOP: b.68.4.1 c.51.2.1 PDB: 3iax_A 1c5k_A 2ivz_A 2w8b_B 2w8b_A 1crz_A

Probab=99.07  E-value=5.1e-08  Score=81.57  Aligned_cols=182  Identities=14%  Similarity=0.072  Sum_probs=113.1

Q ss_pred             CcccEEEcCCCc-EEEEeCC---CcEEEEc-cCCceeEecccCCccccceEEccCCCEEEEEeC-C--CcEEEEe-cCC-
Q 026118           11 HPEDVSVDGNGV-LYTATGD---GWIKRMH-PNGTWEDWHQVGSQSLLGLTTTKENNVIIVCDS-Q--QGLLKVS-EEG-   80 (243)
Q Consensus        11 ~p~~i~~d~~g~-l~~~~~~---~~i~~~~-~~g~~~~~~~~~~~~~~~i~~~~~g~l~~v~~~-~--~gl~~~~-~~g-   80 (243)
                      ...++++.++|. |.++..+   ..|+.++ .+++...+........ .++++|||+.|+++.. .  ..|+.++ .++ 
T Consensus       180 ~v~~~~~Spdg~~la~~s~~~~~~~i~~~d~~tg~~~~l~~~~~~~~-~~~~spdg~~la~~~~~~g~~~i~~~d~~~~~  258 (415)
T 2hqs_A          180 PLMSPAWSPDGSKLAYVTFESGRSALVIQTLANGAVRQVASFPRHNG-APAFSPDGSKLAFALSKTGSLNLYVMDLASGQ  258 (415)
T ss_dssp             CEEEEEECTTSSEEEEEECTTSSCEEEEEETTTCCEEEEECCSSCEE-EEEECTTSSEEEEEECTTSSCEEEEEETTTCC
T ss_pred             cceeeEEcCCCCEEEEEEecCCCcEEEEEECCCCcEEEeecCCCccc-CEEEcCCCCEEEEEEecCCCceEEEEECCCCC
Confidence            455688889885 4444433   3788998 4566554433323344 8899999996453432 2  2388888 566 


Q ss_pred             cEEEEeccCCCcccCCccEEEcCCCc-EEEEeCCCCCCcccccccccccCCCceEEEEeCCCCeeEEeeccccccceEEE
Q 026118           81 VTVLVSQFNGSQLRFANDVIEASDGS-LYFTVSSTKFTPAEYYLDLVSGEPHGVLLKYDPSTNQTSLVLDGLYFANGVAL  159 (243)
Q Consensus        81 ~~~~~~~~~~~~~~~~~~l~~d~~G~-l~v~~~~~~~~~~~~~~~~~~~~~~g~v~~~~~~~~~~~~~~~~~~~~~gi~~  159 (243)
                      ...+...     ...+.+++++|||+ ++++...               .....||.+|.++++.+.+.........++|
T Consensus       259 ~~~l~~~-----~~~~~~~~~spdg~~l~~~s~~---------------~g~~~i~~~d~~~~~~~~l~~~~~~~~~~~~  318 (415)
T 2hqs_A          259 IRQVTDG-----RSNNTEPTWFPDSQNLAFTSDQ---------------AGRPQVYKVNINGGAPQRITWEGSQNQDADV  318 (415)
T ss_dssp             EEECCCC-----SSCEEEEEECTTSSEEEEEECT---------------TSSCEEEEEETTSSCCEECCCSSSEEEEEEE
T ss_pred             EEeCcCC-----CCcccceEECCCCCEEEEEECC---------------CCCcEEEEEECCCCCEEEEecCCCcccCeEE
Confidence            4332211     12355788999998 4444321               1223799999988876665443345567999


Q ss_pred             cCCCCEEEEEEcC--CCeEEEEEeecCCCcceEEeccCCCCCCCceEECCCCC-EEEEEecC
Q 026118          160 SEDERFLVVCESW--KFRCVKHFLKVSGRTDREIFIDNLPGGPDNVNLARDGS-FWISIIKM  218 (243)
Q Consensus       160 ~~dg~~l~v~~~~--~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~i~~d~~G~-lwv~~~~~  218 (243)
                      +|+|++|+++...  ...|+.++.++..   ...+...  .....++++++|+ |+.+...+
T Consensus       319 spdG~~l~~~~~~~g~~~i~~~d~~~~~---~~~l~~~--~~~~~~~~spdg~~l~~~s~~~  375 (415)
T 2hqs_A          319 SSDGKFMVMVSSNGGQQHIAKQDLATGG---VQVLSST--FLDETPSLAPNGTMVIYSSSQG  375 (415)
T ss_dssp             CTTSSEEEEEEECSSCEEEEEEETTTCC---EEECCCS--SSCEEEEECTTSSEEEEEEEET
T ss_pred             CCCCCEEEEEECcCCceEEEEEECCCCC---EEEecCC--CCcCCeEEcCCCCEEEEEEcCC
Confidence            9999988887654  3578888876532   2222211  2456688899998 44544443

>2g8s_A Glucose/sorbosone dehydrogenases; bladed beta-propellor, pyrolloquinoline quinone (PQQ), quinoprotein, sugar binding protein; HET: MSE; 1.50A {Escherichia coli K12}

Probab=99.07  E-value=1.7e-09  Score=88.78  Aligned_cols=164  Identities=12%  Similarity=0.054  Sum_probs=100.3

Q ss_pred             eeEecccCCccccceEEccCCC-EEEEEeCCCcEEEEecCC-cE-EEEecc--CCCcccCCccEEEcC----CCcEEEEe
Q 026118           41 WEDWHQVGSQSLLGLTTTKENN-VIIVCDSQQGLLKVSEEG-VT-VLVSQF--NGSQLRFANDVIEAS----DGSLYFTV  111 (243)
Q Consensus        41 ~~~~~~~~~~~~~~i~~~~~g~-l~~v~~~~~gl~~~~~~g-~~-~~~~~~--~~~~~~~~~~l~~d~----~G~l~v~~  111 (243)
                      ++.+......|. +|+++++|+ + ||+.....|++++.++ .. .+....  .......+.+|+++|    +|.+|++.
T Consensus        10 ~~~va~~l~~P~-~i~~~pdG~~l-~V~e~~G~i~~~~~~g~~~~~~~~~~~v~~~g~~g~~gia~~pdf~~~g~lYv~~   87 (353)
T 2g8s_A           10 VEVLQDKLDHPW-ALAFLPDNHGM-LITLRGGELRHWQAGKGLSAPLSGVPDVWAHGQGGLLDVVLAPDFAQSRRIWLSY   87 (353)
T ss_dssp             EEEEEEEESSEE-EEEECSTTCCE-EEEETTTEEEEEETTTEECCCCBSCCCCCCSTTCSEEEEEECTTHHHHCEEEEEE
T ss_pred             EEEEECCCCCcE-EEEEcCCCCEE-EEEeCCceEEEEeCCCceeeEecCCcccccCCCCCceeEEECCCCCCCCEEEEEE
Confidence            344444446788 999999999 8 9998766788888555 22 222111  111124567899998    48899985


Q ss_pred             CCCCCCcccccccccccCCCceEEEEeCCCC--e---eEEeecc-------ccccceEEEcCCCCEEEEEEcC-------
Q 026118          112 SSTKFTPAEYYLDLVSGEPHGVLLKYDPSTN--Q---TSLVLDG-------LYFANGVALSEDERFLVVCESW-------  172 (243)
Q Consensus       112 ~~~~~~~~~~~~~~~~~~~~g~v~~~~~~~~--~---~~~~~~~-------~~~~~gi~~~~dg~~l~v~~~~-------  172 (243)
                      +...          .......+|++++.+.+  +   .+.+...       ...+.+|+|++||+ ||++...       
T Consensus        88 ~~~~----------~~g~~~~~v~r~~~~~~~~~~~~~~~i~~~~p~~~~~~h~~~~l~~~pdG~-Lyv~~Gd~~~~~~~  156 (353)
T 2g8s_A           88 SEVG----------DDGKAGTAVGYGRLSDDLSKVTDFRTVFRQMPKLSTGNHFGGRLVFDGKGY-LFIALGENNQRPTA  156 (353)
T ss_dssp             EEEC----------SSSCEEEEEEEEEECTTSSBEEEEEEEEECSSCCBSSSCCCCCEEECSSSE-EEEEECCTTCGGGG
T ss_pred             eCCC----------CCCCceeEEEEEEECCCCCCCCceEEEEEECCCCCCCcccCccEEECCCCc-EEEEECCCCCCCcc
Confidence            3200          00001346887766432  2   2222221       23467899999995 9999632       


Q ss_pred             ------CCeEEEEEeecCCC----------cceEEeccCCCCCCCceEECC-CCCEEEEEecC
Q 026118          173 ------KFRCVKHFLKVSGR----------TDREIFIDNLPGGPDNVNLAR-DGSFWISIIKM  218 (243)
Q Consensus       173 ------~~~i~~~~~~~~~~----------~~~~~~~~~~~~~~~~i~~d~-~G~lwv~~~~~  218 (243)
                            .+.|+|+++++...          ...+++... ...|.+|++|+ +|+||++++..
T Consensus       157 q~~~~~~g~I~ri~~dG~~p~~npf~~~~~~~~~i~a~G-~rnp~gl~~d~~~g~l~~~d~g~  218 (353)
T 2g8s_A          157 QDLDKLQGKLVRLTDQGEIPDDNPFIKESGVRAEIWSYG-IRNPQGMAMNPWSNALWLNEHGP  218 (353)
T ss_dssp             GCTTSCTTEEEEEETTSCCCTTCTTTTSTTSCTTEEEEC-CSEEEEEEEETTTTEEEEEEECS
T ss_pred             CCCCCCCeEEEEECCCCCCCCCCCCcCCCCCCccEEEEc-CcCccceEEECCCCCEEEEecCC
Confidence                  35899999875310          022333321 12488999999 89999998763

>3qqz_A Putative uncharacterized protein YJIK; MCSG, PSI-2, structural genomics, midwest center for structu genomics, TOLB-like, Ca binding; 2.55A {Escherichia coli}

Probab=99.05  E-value=7.1e-08  Score=75.16  Aligned_cols=155  Identities=13%  Similarity=0.111  Sum_probs=100.8

Q ss_pred             cccCCcccEEEcCCCcEEEEe-CCCcEEEEc--cCCcee---Eeccc-CCcc-----ccceEEccCCCEEEEEeCCC--c
Q 026118            7 GIVNHPEDVSVDGNGVLYTAT-GDGWIKRMH--PNGTWE---DWHQV-GSQS-----LLGLTTTKENNVIIVCDSQQ--G   72 (243)
Q Consensus         7 g~~~~p~~i~~d~~g~l~~~~-~~~~i~~~~--~~g~~~---~~~~~-~~~~-----~~~i~~~~~g~l~~v~~~~~--g   72 (243)
                      +.+..+++|+++++|.+|++. .+++++.++  .++...   ..... ...+     . ||+++++++.||++....  .
T Consensus        67 ~g~~D~EGIa~~~~g~~~vs~E~~~~l~~~~v~~~~~i~~~~~~~~~~~~~~~N~g~E-GLA~d~~~~~L~va~E~~p~~  145 (255)
T 3qqz_A           67 DFVKDLETIEYIGDNQFVISDERDYAIYVISLTPNSEVKILKKIKIPLQESPTNCGFE-GLAYSRQDHTFWFFKEKNPIE  145 (255)
T ss_dssp             SSCSSEEEEEECSTTEEEEEETTTTEEEEEEECTTCCEEEEEEEECCCSSCCCSSCCE-EEEEETTTTEEEEEEESSSEE
T ss_pred             CCCCChHHeEEeCCCEEEEEECCCCcEEEEEcCCCCeeeeeeeeccccccccccCCcc-eEEEeCCCCEEEEEECcCCce
Confidence            446799999999999998887 567787776  344322   11111 0112     4 899999886559987543  6


Q ss_pred             EEEEe--cCC--cEEEEec--cCCCcccCCccEEEcCC-CcEEEEeCCCCCCcccccccccccCCCceEEEEeCCCCeeE
Q 026118           73 LLKVS--EEG--VTVLVSQ--FNGSQLRFANDVIEASD-GSLYFTVSSTKFTPAEYYLDLVSGEPHGVLLKYDPSTNQTS  145 (243)
Q Consensus        73 l~~~~--~~g--~~~~~~~--~~~~~~~~~~~l~~d~~-G~l~v~~~~~~~~~~~~~~~~~~~~~~g~v~~~~~~~~~~~  145 (243)
                      |+.++  ..+  ...+...  ........+.++++||. |++|+...                 .+..|..+|.+ +++.
T Consensus       146 i~~~~g~~~~~~l~i~~~~~~~~~~~~~d~S~l~~dp~tg~lliLS~-----------------~s~~L~~~d~~-g~~~  207 (255)
T 3qqz_A          146 VYKVNGLLSSNELHISKDKALQRQFTLDDVSGAEFNQQKNTLLVLSH-----------------ESRALQEVTLV-GEVI  207 (255)
T ss_dssp             EEEEESTTCSSCCEEEECHHHHHTCCSSCCCEEEEETTTTEEEEEET-----------------TTTEEEEECTT-CCEE
T ss_pred             EEEEcccccCCceeeecchhhccccccCCceeEEEcCCCCeEEEEEC-----------------CCCeEEEEcCC-CCEE
Confidence            88887  222  3332210  01112345789999984 78888743                 24579999998 4444


Q ss_pred             Ee---ecc-------ccccceEEEcCCCCEEEEEEcCCCeEEEEEee
Q 026118          146 LV---LDG-------LYFANGVALSEDERFLVVCESWKFRCVKHFLK  182 (243)
Q Consensus       146 ~~---~~~-------~~~~~gi~~~~dg~~l~v~~~~~~~i~~~~~~  182 (243)
                      ..   ..+       ...|.||+++++|+ |||++.. +.+|+|...
T Consensus       208 ~~~~L~~g~~~l~~~~~qpEGia~d~~G~-lyIvsE~-n~~y~f~~~  252 (255)
T 3qqz_A          208 GEMSLTKGSRGLSHNIKQAEGVAMDASGN-IYIVSEP-NRFYRFTPQ  252 (255)
T ss_dssp             EEEECSTTGGGCSSCCCSEEEEEECTTCC-EEEEETT-TEEEEEEC-
T ss_pred             EEEEcCCccCCcccccCCCCeeEECCCCC-EEEEcCC-ceEEEEEec
Confidence            32   211       35789999999998 9999654 689998754

>2mad_H Methylamine dehydrogenase (heavy subunit); oxidoreductase(CHNH2(D)-deaminating); HET: TRQ; 2.25A {Paracoccus versutus} SCOP: b.69.2.1 PDB: 1mae_H* 1maf_H*

Probab=99.04  E-value=2.1e-07  Score=76.86  Aligned_cols=200  Identities=15%  Similarity=0.040  Sum_probs=107.2

Q ss_pred             CCcccEEEcCCC-cEEEEeC----------CCcEEEEcc-CCceeE-eccc-------CCccccceEEccCCCEEEEEeC
Q 026118           10 NHPEDVSVDGNG-VLYTATG----------DGWIKRMHP-NGTWED-WHQV-------GSQSLLGLTTTKENNVIIVCDS   69 (243)
Q Consensus        10 ~~p~~i~~d~~g-~l~~~~~----------~~~i~~~~~-~g~~~~-~~~~-------~~~~~~~i~~~~~g~l~~v~~~   69 (243)
                      ..| .|++++|| .||+++.          ++.|..+|. ..+... +...       ...|. ++++++||+.||+++.
T Consensus        67 ~~p-~i~~spDg~~lyv~n~~~~~~~rg~~~~~v~viD~~t~~~~~~i~~~~~~~~~~g~~p~-~~~~spDG~~l~v~n~  144 (373)
T 2mad_H           67 FLP-NPVAAHSGSEFALASTSFSRIAKGKRTDYVEVFDPVTFLPIADIELPDAPRFDVGPYSW-MNANTPNNADLLFFQF  144 (373)
T ss_pred             CCC-CeEECCCCCEEEEEeccccccccCCCCCeEEEEECCCCcEEEEEECCCccccccCCCcc-ceEECCCCCEEEEEec
Confidence            357 99999988 5999862          356889984 444322 2221       13466 8999999998899985


Q ss_pred             C--CcEEEEecCCcEEEEe-ccCCCc-ccCCcc----EEEcCCCcEEEEeCCCCCCc----------cccc--c------
Q 026118           70 Q--QGLLKVSEEGVTVLVS-QFNGSQ-LRFAND----VIEASDGSLYFTVSSTKFTP----------AEYY--L------  123 (243)
Q Consensus        70 ~--~gl~~~~~~g~~~~~~-~~~~~~-~~~~~~----l~~d~~G~l~v~~~~~~~~~----------~~~~--~------  123 (243)
                      .  ..|..+| ...+.+.. ...+.. ...+.+    +...++|++.+.+.. ..-.          ....  .      
T Consensus       145 ~~~~~v~viD-~t~~~~~~~i~~~~~~~~~~~~~~~~~~~~~dg~~~~vd~~-g~~~~~~~~~~~~~~~~p~~~~~~~~~  222 (373)
T 2mad_H          145 AAGPAVGLVV-QGGSSDDQLLSSPTCYHIHPGAPSTFYLLCAQGGLAKTDHA-GGAAGAGLVGAMLTAAQNLLTQPAQAN  222 (373)
T ss_pred             CCCCeEEEEE-CCCCEEeEEcCCCceEEEEeCCCceEEEEcCCCCEEEEECC-CcEEEEEeccccccCCcceeecceeEe
Confidence            3  4588888 43222211 111000 000111    223345553333221 0000          0000  0      


Q ss_pred             ---cccccCCCceEEEEeCCCCeeEEee----------ccccccce---EEEcCCCCEEEEEEc---------CCCeEEE
Q 026118          124 ---DLVSGEPHGVLLKYDPSTNQTSLVL----------DGLYFANG---VALSEDERFLVVCES---------WKFRCVK  178 (243)
Q Consensus       124 ---~~~~~~~~g~v~~~~~~~~~~~~~~----------~~~~~~~g---i~~~~dg~~l~v~~~---------~~~~i~~  178 (243)
                         .+......+.++.+|..++..+.+.          .....|.+   +++++|++.+|++..         ..+.|+.
T Consensus       223 ~~~~~~~~~~~~~v~vid~~~~~~~v~~~~~~~~~~~~~~~~~p~g~~~~~~s~d~~~lyV~~~~~~~~~~~~~~~~V~V  302 (373)
T 2mad_H          223 KSGRIVWPVYSGKILQADISAAGATNKAPIDALSGGRKADTWRPGGWQQVAYLKSSDGIYLLTSEQSAWKLHAAAKEVTS  302 (373)
T ss_pred             cCCEEEEEcCCceEEEEeccCCcceEeeeeeecCCcccccceecCceEeEEECCCCCEEEEEeccCCcccccCCCCeEEE
Confidence               0000012346777777644322111          01123444   889999999999854         2357999


Q ss_pred             EEeecCCCcceEEeccCCCCCCCceEECCCCC-EEEEEec
Q 026118          179 HFLKVSGRTDREIFIDNLPGGPDNVNLARDGS-FWISIIK  217 (243)
Q Consensus       179 ~~~~~~~~~~~~~~~~~~~~~~~~i~~d~~G~-lwv~~~~  217 (243)
                      +|.....  ....+  ...+.|.++++++||+ +++..+.
T Consensus       303 ID~~t~~--vv~~i--~~g~~p~~i~~s~Dg~~~l~v~~~  338 (373)
T 2mad_H          303 VTGLVGQ--TSSQI--SLGHDVDAISVAQDGGPDLYALSA  338 (373)
T ss_pred             EECCCCE--EEEEE--ECCCCcCeEEECCCCCeEEEEEcC
Confidence            9976432  22222  2344699999999998 6555553

>2oiz_A Aromatic amine dehydrogenase, large subunit; oxidoreductase, tryptophan tryptophyl quinone, H-tunneling; HET: TRQ TSR PG4; 1.05A {Alcaligenes faecalis} PDB: 2agw_A* 2agx_A* 2agl_A* 2agz_A* 2ah0_A* 2ah1_A* 2hj4_A* 2hjb_A* 2i0t_A* 2iup_A* 2iuq_A* 2iur_A* 2iuv_A* 2agy_A* 2ok4_A* 2ok6_A* 2iaa_A* 2h47_A* 2h3x_A* 2hkr_A* ...

Probab=99.00  E-value=2.9e-08  Score=81.59  Aligned_cols=198  Identities=13%  Similarity=0.037  Sum_probs=108.0

Q ss_pred             CCcccEEEcCCC-cEEEEeC----------CCcEEEEcc-CCcee-Eeccc------CCccccceEEccCCCEEEEEeCC
Q 026118           10 NHPEDVSVDGNG-VLYTATG----------DGWIKRMHP-NGTWE-DWHQV------GSQSLLGLTTTKENNVIIVCDSQ   70 (243)
Q Consensus        10 ~~p~~i~~d~~g-~l~~~~~----------~~~i~~~~~-~g~~~-~~~~~------~~~~~~~i~~~~~g~l~~v~~~~   70 (243)
                      ..| .++++++| .||+++.          ++.|..+|. ..+.. .+...      ...|. ++++++||++||+++..
T Consensus        51 ~~p-~i~~spdg~~lyv~~~~~~~~~~g~~~~~v~v~d~~t~~~~~~i~~~~~~~~~g~~p~-~i~~spdg~~l~v~n~~  128 (361)
T 2oiz_A           51 FNG-HVQVSNDGKKIYTMTTYHERITRGKRSDVVEVWDADKLTFEKEISLPPKRVQGLNYDG-LFRQTTDGKFIVLQNAS  128 (361)
T ss_dssp             EEE-EEEECTTSSEEEEEEEEETTSSSSCEEEEEEEEETTTCCEEEEEEECTTBCCBCCCGG-GEEECTTSSEEEEEEES
T ss_pred             CCC-ceEECCCCCEEEEEEecccccccCCCCCEEEEEECcCCcEEEEEEcCccccccCCCcc-eEEECCCCCEEEEECCC
Confidence            357 89999988 5998862          345889984 44433 22221      23577 99999999988999854


Q ss_pred             --CcEEEEe-cCCcEEEEe-ccCCCc---ccCCc----cEEEcCCCcEEEEeCCCCCCcc-------cccc---------
Q 026118           71 --QGLLKVS-EEGVTVLVS-QFNGSQ---LRFAN----DVIEASDGSLYFTVSSTKFTPA-------EYYL---------  123 (243)
Q Consensus        71 --~gl~~~~-~~g~~~~~~-~~~~~~---~~~~~----~l~~d~~G~l~v~~~~~~~~~~-------~~~~---------  123 (243)
                        ..|..+| .++ +.+.. ...+..   ...|.    -++..++|++.+.+........       .+..         
T Consensus       129 ~~~~v~v~d~~~~-~~~~~~i~~~~~~~v~~~p~~~~~~~~~~~dg~~~~v~~~~~g~~~~~~~~~~~~~~~~~~~~~~~  207 (361)
T 2oiz_A          129 PATSIGIVDVAKG-DYVEDVTAAAGCWSVIPQPNRPRSFMTICGDGGLLTINLGEDGKVASQSRSKQMFSVKDDPIFIAP  207 (361)
T ss_dssp             SSEEEEEEETTTT-EEEEEEGGGTTEEEEEECTTSSSEEEEEETTSSEEEEEECTTSSEEEEEECCCCSCTTTSCBCSCC
T ss_pred             CCCeEEEEECCCC-cEEEEEecCCCcceeEEcCCCCeeEEEECCCCcEEEEEECCCCcEeeeccccceEcCCCCceEEEe
Confidence              4588888 555 22221 111100   01111    2455667764332211000000       0000         


Q ss_pred             -----cccccCCCceEEEEeCCCCeeEEee-----c-----cccccce---EEEcCCCCEEEEEEc----------CCCe
Q 026118          124 -----DLVSGEPHGVLLKYDPSTNQTSLVL-----D-----GLYFANG---VALSEDERFLVVCES----------WKFR  175 (243)
Q Consensus       124 -----~~~~~~~~g~v~~~~~~~~~~~~~~-----~-----~~~~~~g---i~~~~dg~~l~v~~~----------~~~~  175 (243)
                           ........+.|+.+|..........     .     ....|.+   ++++++++.+|++..          ..+.
T Consensus       208 ~~~g~~~~~~~~~~~v~v~d~~~~~~~~~~~~~~~~~~~~~~~~~p~g~~~~a~~~dg~~lyv~~~~~~~~~~~~~~~~~  287 (361)
T 2oiz_A          208 ALDKDKAHFVSYYGNVYSADFSGDEVKVDGPWSLLNDEDKAKNWVPGGYNLVGLHRASGRMYVFMHPDGKEGTHKFPAAE  287 (361)
T ss_dssp             EECSSEEEEEBTTSEEEEEECSSSSCEEEEEEESCCHHHHHTTCEECCSSCEEEETTTTEEEEEEESSCCTTCTTCCCSE
T ss_pred             cccCCEEEEEeCCCeEEEEEecCCCceecccccccCccccccccccCCeeEEEEecCCCeEEEEEccCCCcccccCCCce
Confidence                 0000112345777776544322211     0     0112333   899999999999864          1357


Q ss_pred             EEEEEeecCCCcceEEeccCCCCCCCceEECCCCC-EEEEE
Q 026118          176 CVKHFLKVSGRTDREIFIDNLPGGPDNVNLARDGS-FWISI  215 (243)
Q Consensus       176 i~~~~~~~~~~~~~~~~~~~~~~~~~~i~~d~~G~-lwv~~  215 (243)
                      |+.||....  .....+.  ... |.+|+++++|+ ||++.
T Consensus       288 v~viD~~t~--~~v~~i~--~~~-p~~ia~spdg~~l~v~n  323 (361)
T 2oiz_A          288 IWVMDTKTK--QRVARIP--GRD-ALSMTIDQQRNLMLTLD  323 (361)
T ss_dssp             EEEEETTTT--EEEEEEE--CTT-CCEEEEETTTTEEEEEC
T ss_pred             EEEEECCCC--cEEEEEe--cCC-eeEEEECCCCCEEEEeC
Confidence            999997643  2222222  233 99999999998 66654

>3sjl_D Methylamine dehydrogenase heavy chain; MAUG, C-heme, quinone cofactor, oxidoreductase-electron transport complex; HET: 0AF HEC MES; 1.63A {Paracoccus denitrificans} PDB: 2gc7_A* 2j55_H* 2j56_H* 2j57_G* 3l4m_D* 3l4o_D* 3orv_D* 3pxs_D* 3pxt_D* 3rlm_D* 2gc4_A* 3rn0_D* 3rn1_D* 3rmz_D* 3svw_D* 3sws_D* 3sxt_D* 3pxw_D* 3sle_D* 1mg2_A* ...

Probab=99.00  E-value=1.7e-07  Score=77.35  Aligned_cols=200  Identities=17%  Similarity=0.135  Sum_probs=112.2

Q ss_pred             CCcccEEEcCCC-cEEEEeC----------CCcEEEEc-cCCcee-Eeccc-------CCccccceEEccCCCEEEEEeC
Q 026118           10 NHPEDVSVDGNG-VLYTATG----------DGWIKRMH-PNGTWE-DWHQV-------GSQSLLGLTTTKENNVIIVCDS   69 (243)
Q Consensus        10 ~~p~~i~~d~~g-~l~~~~~----------~~~i~~~~-~~g~~~-~~~~~-------~~~~~~~i~~~~~g~l~~v~~~   69 (243)
                      ..|. |++++|| .||+++.          ++.|..+| .+.++. .+...       ...|. ++++++||+.+|+++.
T Consensus        79 ~~P~-va~spDG~~lyVan~~~~r~~~G~~~~~VsviD~~t~~v~~~I~v~~g~r~~~g~~P~-~~a~spDGk~lyVan~  156 (386)
T 3sjl_D           79 FLPN-PVVADDGSFIAHASTVFSRIARGERTDYVEVFDPVTLLPTADIELPDAPRFLVGTYPW-MTSLTPDGKTLLFYQF  156 (386)
T ss_dssp             SSCE-EEECTTSSCEEEEEEEEEETTEEEEEEEEEEECTTTCCEEEEEEETTCCCCCBSCCGG-GEEECTTSSEEEEEEC
T ss_pred             CCCc-EEECCCCCEEEEEcccccccccCCCCCEEEEEECCCCeEEEEEECCCccccccCCCCc-eEEEcCCCCEEEEEEc
Confidence            3576 9999988 5999862          35689999 345533 33222       13577 9999999998899985


Q ss_pred             C--CcEEEEe-cCC--cEEEEeccCCCcccCCcc----EEEcCCCcEEEEeCCCCCCc----------ccccc-------
Q 026118           70 Q--QGLLKVS-EEG--VTVLVSQFNGSQLRFAND----VIEASDGSLYFTVSSTKFTP----------AEYYL-------  123 (243)
Q Consensus        70 ~--~gl~~~~-~~g--~~~~~~~~~~~~~~~~~~----l~~d~~G~l~v~~~~~~~~~----------~~~~~-------  123 (243)
                      .  ..|..+| .++  ...+..  .+.....|.+    ++..+||++.+.+.....-.          .....       
T Consensus       157 ~~~~~VsVID~~t~~vv~tI~v--~g~~~~~P~g~~~~~~~~~DG~~~~v~~~~~g~v~~~~~~~~~~~~~~~~~~~~~~  234 (386)
T 3sjl_D          157 SPAPAVGVVDLEGKAFKRMLDV--PDCYHIFPTAPDTFFMHCRDGSLAKVAFGTEGTPEITHTEVFHPEDEFLINHPAYS  234 (386)
T ss_dssp             SSSCEEEEEETTTTEEEEEEEC--CSEEEEEEEETTEEEEEETTSCEEEEECCSSSCCEEEECCCCSCTTSCBCSCCEEE
T ss_pred             CCCCeEEEEECCCCcEEEEEEC--CCcceeecCCCceeEEECCCCCEEEEECCCCCeEEEeecceeccccccccccceeE
Confidence            3  4688899 666  233321  1111111222    35567887655554321010          00000       


Q ss_pred             ----cccccCCCceEEEEeCCCCeeEEeec----------ccccc---ceEEEcCCCCEEEEEEc---------CCCeEE
Q 026118          124 ----DLVSGEPHGVLLKYDPSTNQTSLVLD----------GLYFA---NGVALSEDERFLVVCES---------WKFRCV  177 (243)
Q Consensus       124 ----~~~~~~~~g~v~~~~~~~~~~~~~~~----------~~~~~---~gi~~~~dg~~l~v~~~---------~~~~i~  177 (243)
                          .+......+.||.+|..++..+....          ....|   +.++++++++.||++..         ..+.|+
T Consensus       235 ~~dG~~~~vs~~g~V~v~d~~~~~~~v~~~~~~~~~~~~~~g~~p~g~q~~a~~~~~~~lyV~~~~~~~~~hk~~~~~V~  314 (386)
T 3sjl_D          235 QKAGRLVWPTYTGKIHQIDLSSGDAKFLPAVEALTEAERADGWRPGGWQQVAYHRALDRIYLLVDQRDEWRHKTASRFVV  314 (386)
T ss_dssp             TTTTEEEEEBTTSEEEEEECTTSSCEECCCEESSCHHHHHTTEEECSSSCEEEETTTTEEEEEEEECCTTCTTSCEEEEE
T ss_pred             cCCCcEEEEeCCCEEEEEECCCCcceeecceeccccccccccccCCCcceeeECCCCCeEEEEeccccccccCCCCCEEE
Confidence                00001123567777776544322110          11122   34888999999999853         136799


Q ss_pred             EEEeecCCCcceEEeccCCCCCCCceEECCCCC-EEEEEec
Q 026118          178 KHFLKVSGRTDREIFIDNLPGGPDNVNLARDGS-FWISIIK  217 (243)
Q Consensus       178 ~~~~~~~~~~~~~~~~~~~~~~~~~i~~d~~G~-lwv~~~~  217 (243)
                      .+|....+..  ..+.  ....|.+|++++||+ +++.++.
T Consensus       315 viD~~t~kv~--~~i~--vg~~~~~lavs~D~~~~ly~tn~  351 (386)
T 3sjl_D          315 VLDAKTGERL--AKFE--MGHEIDSINVSQDEKPLLYALST  351 (386)
T ss_dssp             EEETTTCCEE--EEEE--EEEEECEEEECSSSSCEEEEEET
T ss_pred             EEECCCCeEE--EEEE--CCCCcceEEECCCCCeEEEEEcC
Confidence            9998654322  2221  223578999999996 4444443

>3sre_A PON1, serum paraoxonase; directed evolution, 6-blades-propeller fold, hydrolase; HET: LMT; 1.99A {Artificial gene} PDB: 1v04_A* 3srg_A*

Probab=98.99  E-value=7.2e-08  Score=78.74  Aligned_cols=135  Identities=13%  Similarity=0.082  Sum_probs=89.7

Q ss_pred             CcccEEEcC--CC--cEEEEeCC---C--cEEEEccCCceeEec-c----cCCccccceEEccCCCEEEEEeC-------
Q 026118           11 HPEDVSVDG--NG--VLYTATGD---G--WIKRMHPNGTWEDWH-Q----VGSQSLLGLTTTKENNVIIVCDS-------   69 (243)
Q Consensus        11 ~p~~i~~d~--~g--~l~~~~~~---~--~i~~~~~~g~~~~~~-~----~~~~~~~~i~~~~~g~l~~v~~~-------   69 (243)
                      +|.+|.+..  +|  +||+.+..   .  .|+++++++....+. .    ....|+ .++++++|++ |+++.       
T Consensus       113 ~PhGi~~~~d~dg~~~L~Vvnh~~~~s~ielf~~d~~~~~~~~~~~~~g~~~~~pN-D~~v~~~G~f-yvt~~~~ftd~~  190 (355)
T 3sre_A          113 NPHGISTFIDDDNTVYLLVVNHPGSSSTVEVFKFQEEEKSLLHLKTIRHKLLPSVN-DIVAVGPEHF-YATNDHYFIDPY  190 (355)
T ss_dssp             CEEEEEEEECTTCCEEEEEEECSTTCCEEEEEEEETTTTEEEEEEEECCTTCSSEE-EEEEEETTEE-EEEESCSCSSHH
T ss_pred             eeeeeEEEECCCCcEEEEEEECCCCCCeEEEEEEECCCCEEEEEeccccCCCCCCc-eEEEeCCCCE-EecCCcEeCCcc
Confidence            799998854  45  58888733   2  377887665433322 1    224577 8999999998 98864       


Q ss_pred             -----------CCcEEEEecCCcEEEEeccCCCcccCCccEEEcCCC-cEEEEeCCCCCCcccccccccccCCCceEEEE
Q 026118           70 -----------QQGLLKVSEEGVTVLVSQFNGSQLRFANDVIEASDG-SLYFTVSSTKFTPAEYYLDLVSGEPHGVLLKY  137 (243)
Q Consensus        70 -----------~~gl~~~~~~g~~~~~~~~~~~~~~~~~~l~~d~~G-~l~v~~~~~~~~~~~~~~~~~~~~~~g~v~~~  137 (243)
                                 ...|+++++...+.+..     ....||+|+++||| .+|++++.                 ...|++|
T Consensus       191 ~~~~e~~~~~~~g~vyr~d~~~~~~~~~-----~l~~pNGia~spDg~~lYvadt~-----------------~~~I~~~  248 (355)
T 3sre_A          191 LKSWEMHLGLAWSFVTYYSPNDVRVVAE-----GFDFANGINISPDGKYVYIAELL-----------------AHKIHVY  248 (355)
T ss_dssp             HHHHHHHTTCCCEEEEEECTTCCEEEEE-----EESSEEEEEECTTSSEEEEEEGG-----------------GTEEEEE
T ss_pred             cccchhhccCCccEEEEEECCeEEEeec-----CCcccCcceECCCCCEEEEEeCC-----------------CCeEEEE
Confidence                       12488887533444332     24678999999998 59998753                 2467777


Q ss_pred             eCC-CCeeEE--eeccccccceEEEcC-CCCEEEEEE
Q 026118          138 DPS-TNQTSL--VLDGLYFANGVALSE-DERFLVVCE  170 (243)
Q Consensus       138 ~~~-~~~~~~--~~~~~~~~~gi~~~~-dg~~l~v~~  170 (243)
                      +.+ .+++..  ...-...|.||++++ +|+ +|++.
T Consensus       249 ~~~~~g~l~~~~~~~~~g~PDGi~vD~e~G~-lwva~  284 (355)
T 3sre_A          249 EKHANWTLTPLRVLSFDTLVDNISVDPVTGD-LWVGC  284 (355)
T ss_dssp             EECTTSCEEEEEEEECSSEEEEEEECTTTCC-EEEEE
T ss_pred             EECCCCcEecCEEEeCCCCCceEEEeCCCCc-EEEEe
Confidence            654 243322  222346789999999 598 99964

>3ow8_A WD repeat-containing protein 61; structural genomics consortium, SGC, transcriptio; 2.30A {Homo sapiens}

Probab=98.99  E-value=6.8e-07  Score=71.99  Aligned_cols=182  Identities=15%  Similarity=0.108  Sum_probs=114.6

Q ss_pred             CcccEEEcCCCcEE-EEeCCCcEEEEc-cCCceeE-ecccCCccccceEEccCCCEEEEEeCCCcEEEEe-cCC-cEEEE
Q 026118           11 HPEDVSVDGNGVLY-TATGDGWIKRMH-PNGTWED-WHQVGSQSLLGLTTTKENNVIIVCDSQQGLLKVS-EEG-VTVLV   85 (243)
Q Consensus        11 ~p~~i~~d~~g~l~-~~~~~~~i~~~~-~~g~~~~-~~~~~~~~~~~i~~~~~g~l~~v~~~~~gl~~~~-~~g-~~~~~   85 (243)
                      ...++++.++|... ++..++.|..++ ..++... +........ .++++++|++|.++..++-|..+| .++ .....
T Consensus       124 ~~~~~~~spdg~~l~~g~~dg~v~i~~~~~~~~~~~~~~~~~~v~-~~~~spdg~~lasg~~dg~i~iwd~~~~~~~~~~  202 (321)
T 3ow8_A          124 DAWTLAFSPDSQYLATGTHVGKVNIFGVESGKKEYSLDTRGKFIL-SIAYSPDGKYLASGAIDGIINIFDIATGKLLHTL  202 (321)
T ss_dssp             CCCCEEECTTSSEEEEECTTSEEEEEETTTCSEEEEEECSSSCEE-EEEECTTSSEEEEEETTSCEEEEETTTTEEEEEE
T ss_pred             cEEEEEECCCCCEEEEEcCCCcEEEEEcCCCceeEEecCCCceEE-EEEECCCCCEEEEEcCCCeEEEEECCCCcEEEEE
Confidence            34568889988644 555788888888 3444322 222222234 889999999866666555677888 666 22211


Q ss_pred             eccCCCcccCCccEEEcCCCcEEEEeCCCCCCcccccccccccCCCceEEEEeCCCCeeEEeec-cccccceEEEcCCCC
Q 026118           86 SQFNGSQLRFANDVIEASDGSLYFTVSSTKFTPAEYYLDLVSGEPHGVLLKYDPSTNQTSLVLD-GLYFANGVALSEDER  164 (243)
Q Consensus        86 ~~~~~~~~~~~~~l~~d~~G~l~v~~~~~~~~~~~~~~~~~~~~~~g~v~~~~~~~~~~~~~~~-~~~~~~gi~~~~dg~  164 (243)
                         .+ ....+.+++++|+|+++++.+.                 .+.|..+|..+++...... .......++|+|+++
T Consensus       203 ---~~-h~~~v~~l~~spd~~~l~s~s~-----------------dg~i~iwd~~~~~~~~~~~~h~~~v~~~~~sp~~~  261 (321)
T 3ow8_A          203 ---EG-HAMPIRSLTFSPDSQLLVTASD-----------------DGYIKIYDVQHANLAGTLSGHASWVLNVAFCPDDT  261 (321)
T ss_dssp             ---CC-CSSCCCEEEECTTSCEEEEECT-----------------TSCEEEEETTTCCEEEEECCCSSCEEEEEECTTSS
T ss_pred             ---cc-cCCceeEEEEcCCCCEEEEEcC-----------------CCeEEEEECCCcceeEEEcCCCCceEEEEECCCCC
Confidence               11 1234678999999987776432                 3567788887666544333 334567899999999


Q ss_pred             EEEEEEcCCCeEEEEEeecCCCcceEEeccCCCCCCCceEECCCCCEEEEEecC
Q 026118          165 FLVVCESWKFRCVKHFLKVSGRTDREIFIDNLPGGPDNVNLARDGSFWISIIKM  218 (243)
Q Consensus       165 ~l~v~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~i~~d~~G~lwv~~~~~  218 (243)
                      +|+.+ ..++.|..++....  .....+. ........++++++|+..++....
T Consensus       262 ~l~s~-s~D~~v~iwd~~~~--~~~~~~~-~h~~~v~~v~~s~~g~~l~s~~~d  311 (321)
T 3ow8_A          262 HFVSS-SSDKSVKVWDVGTR--TCVHTFF-DHQDQVWGVKYNGNGSKIVSVGDD  311 (321)
T ss_dssp             EEEEE-ETTSCEEEEETTTT--EEEEEEC-CCSSCEEEEEECTTSSEEEEEETT
T ss_pred             EEEEE-eCCCcEEEEeCCCC--EEEEEEc-CCCCcEEEEEECCCCCEEEEEeCC
Confidence            55544 56788999987642  1122222 222345678999999866655443

>1gxr_A ESG1, transducin-like enhancer protein 1; transcriptional CO-repressor, WD40, transcription repressor, WD repeat; 1.65A {Homo sapiens} SCOP: b.69.4.1 PDB: 2ce8_A 2ce9_A

Probab=98.98  E-value=2.3e-07  Score=74.27  Aligned_cols=178  Identities=6%  Similarity=-0.048  Sum_probs=115.2

Q ss_pred             cccEEEcCCCc-EEEEeCCCcEEEEcc-CCcee-EecccCCccccceEEccCCCEEEEEeCCCcEEEEe-cCC-cEEEEe
Q 026118           12 PEDVSVDGNGV-LYTATGDGWIKRMHP-NGTWE-DWHQVGSQSLLGLTTTKENNVIIVCDSQQGLLKVS-EEG-VTVLVS   86 (243)
Q Consensus        12 p~~i~~d~~g~-l~~~~~~~~i~~~~~-~g~~~-~~~~~~~~~~~~i~~~~~g~l~~v~~~~~gl~~~~-~~g-~~~~~~   86 (243)
                      ..++++.+++. |+++..++.|..++. .++.. .+........ .+++++++++++++...+.+..++ .++ ......
T Consensus       144 i~~~~~~~~~~~l~~~~~dg~v~~~d~~~~~~~~~~~~~~~~i~-~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~  222 (337)
T 1gxr_A          144 CYALAISPDSKVCFSCCSDGNIAVWDLHNQTLVRQFQGHTDGAS-CIDISNDGTKLWTGGLDNTVRSWDLREGRQLQQHD  222 (337)
T ss_dssp             EEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEECCCSSCEE-EEEECTTSSEEEEEETTSEEEEEETTTTEEEEEEE
T ss_pred             eEEEEECCCCCEEEEEeCCCcEEEEeCCCCceeeeeecccCceE-EEEECCCCCEEEEEecCCcEEEEECCCCceEeeec
Confidence            45788888875 556668889999983 44433 2222223344 889999998867776656678888 555 222211


Q ss_pred             ccCCCcccCCccEEEcCCCcEEEEeCCCCCCcccccccccccCCCceEEEEeCCCCeeEEeeccccccceEEEcCCCCEE
Q 026118           87 QFNGSQLRFANDVIEASDGSLYFTVSSTKFTPAEYYLDLVSGEPHGVLLKYDPSTNQTSLVLDGLYFANGVALSEDERFL  166 (243)
Q Consensus        87 ~~~~~~~~~~~~l~~d~~G~l~v~~~~~~~~~~~~~~~~~~~~~~g~v~~~~~~~~~~~~~~~~~~~~~gi~~~~dg~~l  166 (243)
                       .    ...+.+++++++|+++++..                 ..+.|..++..+++...+.........+++++++++|
T Consensus       223 -~----~~~v~~~~~s~~~~~l~~~~-----------------~~~~i~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l  280 (337)
T 1gxr_A          223 -F----TSQIFSLGYCPTGEWLAVGM-----------------ESSNVEVLHVNKPDKYQLHLHESCVLSLKFAYCGKWF  280 (337)
T ss_dssp             -C----SSCEEEEEECTTSSEEEEEE-----------------TTSCEEEEETTSSCEEEECCCSSCEEEEEECTTSSEE
T ss_pred             -C----CCceEEEEECCCCCEEEEEc-----------------CCCcEEEEECCCCCeEEEcCCccceeEEEECCCCCEE
Confidence             1    13456789999998666532                 2357888898877766555445567889999999966


Q ss_pred             EEEEcCCCeEEEEEeecCCCcceEEeccCCCCCCCceEECCCCCEEEEEec
Q 026118          167 VVCESWKFRCVKHFLKVSGRTDREIFIDNLPGGPDNVNLARDGSFWISIIK  217 (243)
Q Consensus       167 ~v~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~i~~d~~G~lwv~~~~  217 (243)
                      +.+ ..++.|..|+.......  ...  .....+..++++++|++.++...
T Consensus       281 ~~~-~~dg~i~~~~~~~~~~~--~~~--~~~~~v~~~~~s~~~~~l~~~~~  326 (337)
T 1gxr_A          281 VST-GKDNLLNAWRTPYGASI--FQS--KESSSVLSCDISVDDKYIVTGSG  326 (337)
T ss_dssp             EEE-ETTSEEEEEETTTCCEE--EEE--ECSSCEEEEEECTTSCEEEEEET
T ss_pred             EEe-cCCCcEEEEECCCCeEE--EEe--cCCCcEEEEEECCCCCEEEEecC
Confidence            555 45788999997653211  111  12334567889999985554433

>2ece_A 462AA long hypothetical selenium-binding protein; beta propeller, structural genomics, unknown function; 2.00A {Sulfolobus tokodaii}

Probab=98.98  E-value=1.4e-07  Score=78.80  Aligned_cols=192  Identities=10%  Similarity=0.010  Sum_probs=115.8

Q ss_pred             CcEEEEe-CCCcEEEEcc--C-Cce---eEec------c-cCCccccceEEccCCCEEEEEeCC-------CcEEEEe-c
Q 026118           21 GVLYTAT-GDGWIKRMHP--N-GTW---EDWH------Q-VGSQSLLGLTTTKENNVIIVCDSQ-------QGLLKVS-E   78 (243)
Q Consensus        21 g~l~~~~-~~~~i~~~~~--~-g~~---~~~~------~-~~~~~~~~i~~~~~g~l~~v~~~~-------~gl~~~~-~   78 (243)
                      ..||+.. ..++|+.+|.  + .+.   +.+.      . ....|. ++...++| + ||+..+       +++..+| .
T Consensus        96 ~~l~v~~l~s~~I~viD~~t~p~~p~~~k~ie~~~~~~~~g~s~Ph-~~~~~pdG-i-~Vs~~g~~~g~~~g~v~vlD~~  172 (462)
T 2ece_A           96 RFLIVPGLRSSRIYIIDTKPNPREPKIIKVIEPEEVKKVSGYSRLH-TVHCGPDA-I-YISALGNEEGEGPGGILMLDHY  172 (462)
T ss_dssp             CEEEEEBTTTCCEEEEECCSCTTSCEEEEEECHHHHHHHHCEEEEE-EEEECSSC-E-EEEEEEETTSCSCCEEEEECTT
T ss_pred             CEEEEccCCCCeEEEEECCCCCCCceeeeeechhhcccccCCCccc-ceeECCCe-E-EEEcCCCcCCCCCCeEEEEECC
Confidence            3688887 6788999993  2 222   2221      1 112567 78888999 6 776643       3689999 5


Q ss_pred             CCcEEEEecc-CCCcccCCccEEEcCCCcEEEEeCCCCCCcc-----ccc-ccccccCCCceEEEEeCCCCeeEEeecc-
Q 026118           79 EGVTVLVSQF-NGSQLRFANDVIEASDGSLYFTVSSTKFTPA-----EYY-LDLVSGEPHGVLLKYDPSTNQTSLVLDG-  150 (243)
Q Consensus        79 ~g~~~~~~~~-~~~~~~~~~~l~~d~~G~l~v~~~~~~~~~~-----~~~-~~~~~~~~~g~v~~~~~~~~~~~~~~~~-  150 (243)
                      ++ +.+.... ...+.....++.+.|++++.++..   |+..     .+. .++.. .....|..+|.+++++.....- 
T Consensus       173 T~-~v~~~~~~~~~~~~~~Yd~~~~p~~~~mvsS~---wg~p~~~~~g~~~~~~~~-~~~d~V~v~D~~~~k~~~tI~vg  247 (462)
T 2ece_A          173 SF-EPLGKWEIDRGDQYLAYDFWWNLPNEVLVSSE---WAVPNTIEDGLKLEHLKD-RYGNRIHFWDLRKRKRIHSLTLG  247 (462)
T ss_dssp             TC-CEEEECCSBCTTCCCCCCEEEETTTTEEEECB---CCCHHHHTTCCCTTTHHH-HSCCEEEEEETTTTEEEEEEESC
T ss_pred             CC-eEEEEEccCCCCccccceEEECCCCCEEEEcc---CcCccccccccchhhhhh-ccCCEEEEEECCCCcEeeEEecC
Confidence            45 2222211 112223455778899998666642   2210     000 00001 2356899999987765433221 


Q ss_pred             --ccccceEEE--cCCCCEEEEEEc-----CCCeEEEEEeecCCCcceEEe--cc-----CC----------CCCCCceE
Q 026118          151 --LYFANGVAL--SEDERFLVVCES-----WKFRCVKHFLKVSGRTDREIF--ID-----NL----------PGGPDNVN  204 (243)
Q Consensus       151 --~~~~~gi~~--~~dg~~l~v~~~-----~~~~i~~~~~~~~~~~~~~~~--~~-----~~----------~~~~~~i~  204 (243)
                        ...|..|.|  +|+++++|++..     .++.|+++..+++.....+++  ..     ..          ...|.+|.
T Consensus       248 ~~g~~P~~i~f~~~Pdg~~aYV~~e~~~~~Lss~V~v~~~d~g~~~~~~vIdi~~~~v~~~lp~~~~~f~~~~~~pa~I~  327 (462)
T 2ece_A          248 EENRMALELRPLHDPTKLMGFINMVVSLKDLSSSIWLWFYEDGKWNAEKVIEIPAEPLEGNLPEILKPFKAVPPLVTDID  327 (462)
T ss_dssp             TTEEEEEEEEECSSTTCCEEEEEEEEETTTCCEEEEEEEEETTEEEEEEEEEECCEECCSSCCGGGGGGTEECCCCCCEE
T ss_pred             CCCCccceeEeeECCCCCEEEEEEeeeccCCCceEEEEEecCCceeEEEEEeCCCccccccccccccccccCCCceeEEE
Confidence              245666766  999999999988     888999887765332222221  11     00          35688999


Q ss_pred             ECCCCC-EEEEEecCCc
Q 026118          205 LARDGS-FWISIIKMDP  220 (243)
Q Consensus       205 ~d~~G~-lwv~~~~~~~  220 (243)
                      +++||+ |||+++..+.
T Consensus       328 lS~DGrfLYVSnrg~d~  344 (462)
T 2ece_A          328 ISLDDKFLYLSLWGIGE  344 (462)
T ss_dssp             ECTTSCEEEEEETTTTE
T ss_pred             ECCCCCEEEEEeCCCCE
Confidence            999998 8998876543

>4h5i_A Guanine nucleotide-exchange factor SEC12; copii vesicle budding, potassium binding site, beta propelle protein transport; 1.36A {Saccharomyces cerevisiae} PDB: 4h5j_A

Probab=98.97  E-value=2.5e-07  Score=76.02  Aligned_cols=189  Identities=14%  Similarity=0.059  Sum_probs=111.8

Q ss_pred             cccEEEcCCCc-EEEEe--CCCcEEEEc-cCCceeEecccCCccccceEEccCCCEEEEEeCCCcEEEEe-cCCcEEEEe
Q 026118           12 PEDVSVDGNGV-LYTAT--GDGWIKRMH-PNGTWEDWHQVGSQSLLGLTTTKENNVIIVCDSQQGLLKVS-EEGVTVLVS   86 (243)
Q Consensus        12 p~~i~~d~~g~-l~~~~--~~~~i~~~~-~~g~~~~~~~~~~~~~~~i~~~~~g~l~~v~~~~~gl~~~~-~~g~~~~~~   86 (243)
                      ...+++.|||. |.+++  .++.|..++ .+++............ +++++|+|++ +++....++..++ .++......
T Consensus       136 ~~~v~fSpDg~~la~as~~~d~~i~iwd~~~~~~~~~~~~~~~V~-~v~fspdg~~-l~s~s~~~~~~~~~~~~~~~~~~  213 (365)
T 4h5i_A          136 TKLVYISREGTVAAIASSKVPAIMRIIDPSDLTEKFEIETRGEVK-DLHFSTDGKV-VAYITGSSLEVISTVTGSCIARK  213 (365)
T ss_dssp             EEEEEECTTSSCEEEEESCSSCEEEEEETTTTEEEEEEECSSCCC-EEEECTTSSE-EEEECSSCEEEEETTTCCEEEEE
T ss_pred             EEEEEEcCCCCEEEEEECCCCCEEEEeECCCCcEEEEeCCCCceE-EEEEccCCce-EEeccceeEEEEEeccCcceeee
Confidence            45689999996 44555  567888898 4554433222223345 8999999998 4444467788888 556222111


Q ss_pred             ccCCCcccCCccEEEcCCCcEEEEeCCCCCCcccccccccccCCCceEEEEeCCCCeeEE-----eeccccccceEEEcC
Q 026118           87 QFNGSQLRFANDVIEASDGSLYFTVSSTKFTPAEYYLDLVSGEPHGVLLKYDPSTNQTSL-----VLDGLYFANGVALSE  161 (243)
Q Consensus        87 ~~~~~~~~~~~~l~~d~~G~l~v~~~~~~~~~~~~~~~~~~~~~~g~v~~~~~~~~~~~~-----~~~~~~~~~gi~~~~  161 (243)
                      ... .....+.++++.|+|++.++.+..             ......++.++........     +.........++|+|
T Consensus       214 ~~~-~~~~~v~~v~fspdg~~l~~~s~d-------------~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~V~~~~~Sp  279 (365)
T 4h5i_A          214 TDF-DKNWSLSKINFIADDTVLIAASLK-------------KGKGIVLTKISIKSGNTSVLRSKQVTNRFKGITSMDVDM  279 (365)
T ss_dssp             CCC-CTTEEEEEEEEEETTEEEEEEEES-------------SSCCEEEEEEEEETTEEEEEEEEEEESSCSCEEEEEECT
T ss_pred             ecC-CCCCCEEEEEEcCCCCEEEEEecC-------------CcceeEEeecccccceecceeeeeecCCCCCeEeEEECC
Confidence            111 112346688999999877663210             0111235555544333221     222334467899999


Q ss_pred             CCCEEEEEEcCCCeEEEEEeecCCCcceEEeccCCCCCCCceEECCCCCEEEEEecCC
Q 026118          162 DERFLVVCESWKFRCVKHFLKVSGRTDREIFIDNLPGGPDNVNLARDGSFWISIIKMD  219 (243)
Q Consensus       162 dg~~l~v~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~i~~d~~G~lwv~~~~~~  219 (243)
                      ||++|..+ ..++.|..||....  .....+...-......++++++|++.++....+
T Consensus       280 dg~~lasg-s~D~~V~iwd~~~~--~~~~~~~~gH~~~V~~v~fSpdg~~laS~S~D~  334 (365)
T 4h5i_A          280 KGELAVLA-SNDNSIALVKLKDL--SMSKIFKQAHSFAITEVTISPDSTYVASVSAAN  334 (365)
T ss_dssp             TSCEEEEE-ETTSCEEEEETTTT--EEEEEETTSSSSCEEEEEECTTSCEEEEEETTS
T ss_pred             CCCceEEE-cCCCEEEEEECCCC--cEEEEecCcccCCEEEEEECCCCCEEEEEeCCC
Confidence            99966555 56788999997642  112222222223456799999999777665544

>1mda_H Methylamine dehydrogenase (heavy subunit); electron transport; HET: TRQ; 2.50A {Paracoccus denitrificans} SCOP: b.69.2.1

Probab=98.96  E-value=2.5e-08  Score=82.03  Aligned_cols=197  Identities=9%  Similarity=-0.051  Sum_probs=107.7

Q ss_pred             CCcccEEEcCCC-cEEEEeC----------CCcEEEEc-cCCceeE-eccc-------CCccccceEEccCCCEEEEEeC
Q 026118           10 NHPEDVSVDGNG-VLYTATG----------DGWIKRMH-PNGTWED-WHQV-------GSQSLLGLTTTKENNVIIVCDS   69 (243)
Q Consensus        10 ~~p~~i~~d~~g-~l~~~~~----------~~~i~~~~-~~g~~~~-~~~~-------~~~~~~~i~~~~~g~l~~v~~~   69 (243)
                      ..| ++++++|| .||+++.          ++.|..+| .++++.. +..+       ...|. ++++++||+++|+++.
T Consensus        66 ~~P-~i~~spDg~~lyVan~~~~r~~~G~~~~~VsviD~~T~~vv~~I~v~~~~~~~~g~~P~-~ia~SpDGk~lyVan~  143 (368)
T 1mda_H           66 FLS-LAVAGHSGSDFALASTSFARSAKGKRTDYVEVFDPVTFLPIADIELPDAPRFSVGPRVH-IIGNCASSACLLFFLF  143 (368)
T ss_dssp             TTC-EEEECTTSSCEEEEEEEETTTTSSSEEEEEEEECTTTCCEEEEEEETTSCSCCBSCCTT-SEEECTTSSCEEEEEC
T ss_pred             CCC-ceEECCCCCEEEEEcccccccccCCCCCEEEEEECCCCCEEEEEECCCccccccCCCcc-eEEEcCCCCEEEEEcc
Confidence            358 89999988 6999972          46789999 4555443 3221       13588 9999999998899986


Q ss_pred             C-Cc-EEE--Ee-cCCcEEEEeccCCCcccCCcc----EEEcCCCcEEEEeCCC-----C-CCc---cccc---------
Q 026118           70 Q-QG-LLK--VS-EEGVTVLVSQFNGSQLRFAND----VIEASDGSLYFTVSST-----K-FTP---AEYY---------  122 (243)
Q Consensus        70 ~-~g-l~~--~~-~~g~~~~~~~~~~~~~~~~~~----l~~d~~G~l~v~~~~~-----~-~~~---~~~~---------  122 (243)
                      . .. +..  +| .+ ...+..  .+.....+.+    ++..++|++.+.+...     + ...   ..+.         
T Consensus       144 ~~~~~v~V~~iD~~t-v~~i~v--~~~~~~~p~g~~~~~~~~~dg~~~~vd~~~~~~~~~~v~~~~t~~i~vg~~P~~~~  220 (368)
T 1mda_H          144 GSSAAAGLSVPGASD-DQLTKS--ASCFHIHPGAAATHYLGSCPASLAASDLAAAPAAAGIVGAQCTGAQNCSSQAAQAN  220 (368)
T ss_dssp             SSSCEEEEEETTTEE-EEEEEC--SSCCCCEEEETTEEECCCCTTSCEEEECCSSCCCCEECCCCSCTTSCBCSCCEEET
T ss_pred             CCCCeEEEEEEchhh-ceEEEC--CCceEEccCCCeEEEEEcCCCCEEEEECccccccCCeEEEEeeeeeeCCCCccccc
Confidence            4 33 555  56 33 333221  0000001111    2223445433333221     0 000   0000         


Q ss_pred             --ccccccCCCceEEEEeCCCCeeEEee----------ccccccce---EEEcCCCCEEEEEEc---C-----CCeEEEE
Q 026118          123 --LDLVSGEPHGVLLKYDPSTNQTSLVL----------DGLYFANG---VALSEDERFLVVCES---W-----KFRCVKH  179 (243)
Q Consensus       123 --~~~~~~~~~g~v~~~~~~~~~~~~~~----------~~~~~~~g---i~~~~dg~~l~v~~~---~-----~~~i~~~  179 (243)
                        ..+..... +.|+.+|..+...+.+.          .....|.+   +++++|++.+|++..   .     .+.+..+
T Consensus       221 ~~~~~~~vs~-~~V~viD~~~~~~~v~~~~~~~~~~~~~~~~~p~g~~~v~~s~dg~~lyV~~~~~~~~~~~~~~~~~Vi  299 (368)
T 1mda_H          221 YPGMLVWAVA-SSILQGDIPAAGATMKAAIDGNESGRKADNFRSAGFQMVAKLKNTDGIMILTVEHSRSCLAAAENTSSV  299 (368)
T ss_dssp             TTTEEEECBS-SCCEEEECCSSCCEEECCCCSSCTHHHHTTEEECSSSCEEEETTTTEEEEEEEECSSCTTSCEEEEEEE
T ss_pred             cCCEEEEEcC-CEEEEEECCCCcceEEEEEEeccccccccccccCcceeeEEcCCCCEEEEEeccccCcccccCCCEEEE
Confidence              00000011 56778887643322211          01223444   889999999999854   2     2467788


Q ss_pred             EeecCCCcceEEeccCCCCCCCceEECCCCC-EEEEEe
Q 026118          180 FLKVSGRTDREIFIDNLPGGPDNVNLARDGS-FWISII  216 (243)
Q Consensus       180 ~~~~~~~~~~~~~~~~~~~~~~~i~~d~~G~-lwv~~~  216 (243)
                      |....+.  ...+.  ....|.+|+++++|+ +|++++
T Consensus       300 D~~t~~v--v~~i~--vg~~p~gi~~s~Dg~~l~va~~  333 (368)
T 1mda_H          300 TASVGQT--SGPIS--NGHDSDAIIAAQDGASDNYANS  333 (368)
T ss_dssp             ESSSCCE--EECCE--EEEEECEEEECCSSSCEEEEEE
T ss_pred             ECCCCeE--EEEEE--CCCCcceEEECCCCCEEEEEcc
Confidence            8765321  12221  223699999999997 899887

>3ow8_A WD repeat-containing protein 61; structural genomics consortium, SGC, transcriptio; 2.30A {Homo sapiens}

Probab=98.95  E-value=9.4e-07  Score=71.17  Aligned_cols=181  Identities=14%  Similarity=0.091  Sum_probs=111.6

Q ss_pred             cccEEEcCCCcEE-EEeCCCcEEEEc-cCCcee-EecccCCccccceEEccCCCEEEEEeCCCcEEEEe-cCCcEEEEec
Q 026118           12 PEDVSVDGNGVLY-TATGDGWIKRMH-PNGTWE-DWHQVGSQSLLGLTTTKENNVIIVCDSQQGLLKVS-EEGVTVLVSQ   87 (243)
Q Consensus        12 p~~i~~d~~g~l~-~~~~~~~i~~~~-~~g~~~-~~~~~~~~~~~~i~~~~~g~l~~v~~~~~gl~~~~-~~g~~~~~~~   87 (243)
                      -.++++.+++.+. .+..++.|..++ .+++.. .+........ .++++++|+++.++...+.+..++ .++.......
T Consensus        83 v~~~~~~~~~~~l~s~s~D~~i~lWd~~~~~~~~~~~~~~~~~~-~~~~spdg~~l~~g~~dg~v~i~~~~~~~~~~~~~  161 (321)
T 3ow8_A           83 VVSVDISHTLPIAASSSLDAHIRLWDLENGKQIKSIDAGPVDAW-TLAFSPDSQYLATGTHVGKVNIFGVESGKKEYSLD  161 (321)
T ss_dssp             EEEEEECSSSSEEEEEETTSEEEEEETTTTEEEEEEECCTTCCC-CEEECTTSSEEEEECTTSEEEEEETTTCSEEEEEE
T ss_pred             EEEEEECCCCCEEEEEeCCCcEEEEECCCCCEEEEEeCCCccEE-EEEECCCCCEEEEEcCCCcEEEEEcCCCceeEEec
Confidence            4456777777654 445788899998 445433 2322222334 789999999856655545577777 5552221111


Q ss_pred             cCCCcccCCccEEEcCCCcEEEEeCCCCCCcccccccccccCCCceEEEEeCCCCeeEEeecc-ccccceEEEcCCCCEE
Q 026118           88 FNGSQLRFANDVIEASDGSLYFTVSSTKFTPAEYYLDLVSGEPHGVLLKYDPSTNQTSLVLDG-LYFANGVALSEDERFL  166 (243)
Q Consensus        88 ~~~~~~~~~~~l~~d~~G~l~v~~~~~~~~~~~~~~~~~~~~~~g~v~~~~~~~~~~~~~~~~-~~~~~gi~~~~dg~~l  166 (243)
                      .   ....+.+++++|+|+++++.+                 ..+.|..+|..+++....... ......++|+|++++|
T Consensus       162 ~---~~~~v~~~~~spdg~~lasg~-----------------~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~spd~~~l  221 (321)
T 3ow8_A          162 T---RGKFILSIAYSPDGKYLASGA-----------------IDGIINIFDIATGKLLHTLEGHAMPIRSLTFSPDSQLL  221 (321)
T ss_dssp             C---SSSCEEEEEECTTSSEEEEEE-----------------TTSCEEEEETTTTEEEEEECCCSSCCCEEEECTTSCEE
T ss_pred             C---CCceEEEEEECCCCCEEEEEc-----------------CCCeEEEEECCCCcEEEEEcccCCceeEEEEcCCCCEE
Confidence            1   123466889999998777632                 235788889887776544433 3446789999999955


Q ss_pred             EEEEcCCCeEEEEEeecCCCcceEEeccCCCCCCCceEECCCCCEEEEEec
Q 026118          167 VVCESWKFRCVKHFLKVSGRTDREIFIDNLPGGPDNVNLARDGSFWISIIK  217 (243)
Q Consensus       167 ~v~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~i~~d~~G~lwv~~~~  217 (243)
                      . +...++.|..|+......  ...+. .-......+++.++|++.++...
T Consensus       222 ~-s~s~dg~i~iwd~~~~~~--~~~~~-~h~~~v~~~~~sp~~~~l~s~s~  268 (321)
T 3ow8_A          222 V-TASDDGYIKIYDVQHANL--AGTLS-GHASWVLNVAFCPDDTHFVSSSS  268 (321)
T ss_dssp             E-EECTTSCEEEEETTTCCE--EEEEC-CCSSCEEEEEECTTSSEEEEEET
T ss_pred             E-EEcCCCeEEEEECCCcce--eEEEc-CCCCceEEEEECCCCCEEEEEeC
Confidence            4 445678899999764321  12221 22233556888888886555443

>1gxr_A ESG1, transducin-like enhancer protein 1; transcriptional CO-repressor, WD40, transcription repressor, WD repeat; 1.65A {Homo sapiens} SCOP: b.69.4.1 PDB: 2ce8_A 2ce9_A

Probab=98.95  E-value=7.7e-07  Score=71.13  Aligned_cols=180  Identities=11%  Similarity=0.042  Sum_probs=115.6

Q ss_pred             CcccEEEcCCCc-EEEEeCCCcEEEEcc-CCce--e-EecccCCccccceEEccCCCEEEEEeCCCcEEEEe-cCC-cEE
Q 026118           11 HPEDVSVDGNGV-LYTATGDGWIKRMHP-NGTW--E-DWHQVGSQSLLGLTTTKENNVIIVCDSQQGLLKVS-EEG-VTV   83 (243)
Q Consensus        11 ~p~~i~~d~~g~-l~~~~~~~~i~~~~~-~g~~--~-~~~~~~~~~~~~i~~~~~g~l~~v~~~~~gl~~~~-~~g-~~~   83 (243)
                      ...++++.+++. |+++..++.|..++. .++.  . .+........ .+++++++++++++...+.+..++ .++ ...
T Consensus        99 ~v~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~i~-~~~~~~~~~~l~~~~~dg~v~~~d~~~~~~~~  177 (337)
T 1gxr_A           99 YIRSCKLLPDGCTLIVGGEASTLSIWDLAAPTPRIKAELTSSAPACY-ALAISPDSKVCFSCCSDGNIAVWDLHNQTLVR  177 (337)
T ss_dssp             BEEEEEECTTSSEEEEEESSSEEEEEECCCC--EEEEEEECSSSCEE-EEEECTTSSEEEEEETTSCEEEEETTTTEEEE
T ss_pred             cEEEEEEcCCCCEEEEEcCCCcEEEEECCCCCcceeeecccCCCceE-EEEECCCCCEEEEEeCCCcEEEEeCCCCceee
Confidence            355688888886 556668888999983 3331  1 1221122234 789999999867777666788888 555 222


Q ss_pred             EEeccCCCcccCCccEEEcCCCcEEEEeCCCCCCcccccccccccCCCceEEEEeCCCCeeEEeeccccccceEEEcCCC
Q 026118           84 LVSQFNGSQLRFANDVIEASDGSLYFTVSSTKFTPAEYYLDLVSGEPHGVLLKYDPSTNQTSLVLDGLYFANGVALSEDE  163 (243)
Q Consensus        84 ~~~~~~~~~~~~~~~l~~d~~G~l~v~~~~~~~~~~~~~~~~~~~~~~g~v~~~~~~~~~~~~~~~~~~~~~gi~~~~dg  163 (243)
                      ...   . ....+.+++++++|+++++..                 ..+.|..+|..+++.............+++++++
T Consensus       178 ~~~---~-~~~~i~~~~~~~~~~~l~~~~-----------------~dg~i~~~d~~~~~~~~~~~~~~~v~~~~~s~~~  236 (337)
T 1gxr_A          178 QFQ---G-HTDGASCIDISNDGTKLWTGG-----------------LDNTVRSWDLREGRQLQQHDFTSQIFSLGYCPTG  236 (337)
T ss_dssp             EEC---C-CSSCEEEEEECTTSSEEEEEE-----------------TTSEEEEEETTTTEEEEEEECSSCEEEEEECTTS
T ss_pred             eee---c-ccCceEEEEECCCCCEEEEEe-----------------cCCcEEEEECCCCceEeeecCCCceEEEEECCCC
Confidence            111   1 123567889999998666532                 2467889998877765544444556789999999


Q ss_pred             CEEEEEEcCCCeEEEEEeecCCCcceEEeccCCCCCCCceEECCCCCEEEEEec
Q 026118          164 RFLVVCESWKFRCVKHFLKVSGRTDREIFIDNLPGGPDNVNLARDGSFWISIIK  217 (243)
Q Consensus       164 ~~l~v~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~i~~d~~G~lwv~~~~  217 (243)
                      +.++++. .++.|..|+......   ..+. .....+..++++++|++.++...
T Consensus       237 ~~l~~~~-~~~~i~~~~~~~~~~---~~~~-~~~~~v~~~~~~~~~~~l~~~~~  285 (337)
T 1gxr_A          237 EWLAVGM-ESSNVEVLHVNKPDK---YQLH-LHESCVLSLKFAYCGKWFVSTGK  285 (337)
T ss_dssp             SEEEEEE-TTSCEEEEETTSSCE---EEEC-CCSSCEEEEEECTTSSEEEEEET
T ss_pred             CEEEEEc-CCCcEEEEECCCCCe---EEEc-CCccceeEEEECCCCCEEEEecC
Confidence            9777664 567899999765321   2221 22334567888998885554443

>2ymu_A WD-40 repeat protein; unknown function, two domains; 1.79A {Nostoc punctiforme}

Probab=98.93  E-value=3.5e-07  Score=79.05  Aligned_cols=179  Identities=15%  Similarity=0.105  Sum_probs=113.5

Q ss_pred             CcccEEEcCCCc-EEEEeCCCcEEEEccCCceeE-ecccCCccccceEEccCCCEEEEEeCCCcEEEEecCC--cEEEEe
Q 026118           11 HPEDVSVDGNGV-LYTATGDGWIKRMHPNGTWED-WHQVGSQSLLGLTTTKENNVIIVCDSQQGLLKVSEEG--VTVLVS   86 (243)
Q Consensus        11 ~p~~i~~d~~g~-l~~~~~~~~i~~~~~~g~~~~-~~~~~~~~~~~i~~~~~g~l~~v~~~~~gl~~~~~~g--~~~~~~   86 (243)
                      ...++++.++|. |.++..++.|..++.+++... +........ +++++++++++.++..+..+..++.++  ...+..
T Consensus       387 ~v~~~~~s~dg~~l~~~~~d~~v~~~~~~~~~~~~~~~~~~~v~-~~~~s~d~~~l~~~~~d~~v~~w~~~~~~~~~~~~  465 (577)
T 2ymu_A          387 SVRGVAFSPDGQTIASASDDKTVKLWNRNGQLLQTLTGHSSSVW-GVAFSPDDQTIASASDDKTVKLWNRNGQLLQTLTG  465 (577)
T ss_dssp             CEEEEEECTTSSCEEEEETTSEEEEECTTCCEEEEEECCSSCEE-EEEECTTSSEEEEEETTSEEEEEETTSCEEEEEEC
T ss_pred             CeEEEEECCCCCEEEEEeCCCEEEEEeCCCCEEEEecCCCCCeE-EEEECCCCCEEEEEcCCCEEEEEECCCCEEEEEcC
Confidence            456788999886 445567888999986665433 222223334 899999999856665544566667544  333221


Q ss_pred             ccCCCcccCCccEEEcCCCcEEEEeCCCCCCcccccccccccCCCceEEEEeCCCCeeEEeeccccccceEEEcCCCCEE
Q 026118           87 QFNGSQLRFANDVIEASDGSLYFTVSSTKFTPAEYYLDLVSGEPHGVLLKYDPSTNQTSLVLDGLYFANGVALSEDERFL  166 (243)
Q Consensus        87 ~~~~~~~~~~~~l~~d~~G~l~v~~~~~~~~~~~~~~~~~~~~~~g~v~~~~~~~~~~~~~~~~~~~~~gi~~~~dg~~l  166 (243)
                           ....+.+++++|+|++.++.+                 ..+.|..++.++..++.+.......+.++|+|+|++|
T Consensus       466 -----~~~~v~~~~~spd~~~las~~-----------------~d~~i~iw~~~~~~~~~~~~h~~~v~~l~~s~dg~~l  523 (577)
T 2ymu_A          466 -----HSSSVRGVAFSPDGQTIASAS-----------------DDKTVKLWNRNGQLLQTLTGHSSSVRGVAFSPDGQTI  523 (577)
T ss_dssp             -----CSSCEEEEEECTTSCEEEEEE-----------------TTSEEEEEETTSCEEEEEECCSSCEEEEEECTTSSCE
T ss_pred             -----CCCCEEEEEEcCCCCEEEEEe-----------------CCCEEEEEcCCCCEEEEEeCCCCCEEEEEEcCCCCEE
Confidence                 123467889999999877632                 2356777787644444444444556889999999966


Q ss_pred             EEEEcCCCeEEEEEeecCCCcceEEeccCCCCCCCceEECCCCCEEEEEec
Q 026118          167 VVCESWKFRCVKHFLKVSGRTDREIFIDNLPGGPDNVNLARDGSFWISIIK  217 (243)
Q Consensus       167 ~v~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~i~~d~~G~lwv~~~~  217 (243)
                      ..+ ..++.|..|+.++.   ....+. .-.+...++++.++|++.++...
T Consensus       524 ~s~-~~dg~v~lwd~~~~---~~~~~~-~h~~~v~~~~fs~dg~~l~s~~~  569 (577)
T 2ymu_A          524 ASA-SDDKTVKLWNRNGQ---LLQTLT-GHSSSVWGVAFSPDGQTIASASS  569 (577)
T ss_dssp             EEE-ETTSEEEEECTTSC---EEEEEE-CCSSCEEEEEECTTSSCEEEEET
T ss_pred             EEE-ECcCEEEEEeCCCC---EEEEEc-CCCCCEEEEEEcCCCCEEEEEeC
Confidence            655 45688998886432   222222 22334567999999986665443

>1fwx_A Nitrous oxide reductase; beta-propeller domain, cupredoxin domain, CUZ site, CUA site oxidoreductase; 1.60A {Paracoccus denitrificans} SCOP: b.6.1.4 b.69.3.1 PDB: 2iwk_A 2iwf_A

Probab=98.91  E-value=1.2e-07  Score=81.72  Aligned_cols=195  Identities=11%  Similarity=0.096  Sum_probs=117.5

Q ss_pred             CC-cEEEEe-CCCcEEEEcc-CCceeEecc-c-CCccccceEE-c-cCCCEEEEEeC-----------------CC-cEE
Q 026118           20 NG-VLYTAT-GDGWIKRMHP-NGTWEDWHQ-V-GSQSLLGLTT-T-KENNVIIVCDS-----------------QQ-GLL   74 (243)
Q Consensus        20 ~g-~l~~~~-~~~~i~~~~~-~g~~~~~~~-~-~~~~~~~i~~-~-~~g~l~~v~~~-----------------~~-gl~   74 (243)
                      || .||+.+ .+.+|.++|. ..+...+.. + ...|. ++++ . |+++.+|+++.                 .. -+.
T Consensus       100 DG~~lfVnd~~~~rVavIdl~t~~~~~ii~ip~g~~ph-g~~~~~~p~~~~v~~~~~~~~p~~~dg~~l~~~~~~~~~vt  178 (595)
T 1fwx_A          100 DGRFLFMNDKANTRVARVRCDVMKCDAILEIPNAKGIH-GLRPQKWPRSNYVFCNGEDETPLVNDGTNMEDVANYVNVFT  178 (595)
T ss_dssp             EEEEEEEEETTTTEEEEEETTTTEEEEEEECSSCCSEE-EEEECCSSBCSEEEEEECSCEESSCSSSSTTCGGGEEEEEE
T ss_pred             CCCEEEEEcCCCCEEEEEECCCceEeeEEeCCCCCCCc-ceeeeecCCCcEEEEecccccccCCCCcccccccccCceEE
Confidence            66 589987 5678999994 444333221 1 24577 8887 4 89998788841                 11 255


Q ss_pred             EEe-cCCcEEEEeccCCCcccCCccEEEcCCCc-EEEEeCCCCCCcc---------cc------c---cccccc--CCCc
Q 026118           75 KVS-EEGVTVLVSQFNGSQLRFANDVIEASDGS-LYFTVSSTKFTPA---------EY------Y---LDLVSG--EPHG  132 (243)
Q Consensus        75 ~~~-~~g~~~~~~~~~~~~~~~~~~l~~d~~G~-l~v~~~~~~~~~~---------~~------~---~~~~~~--~~~g  132 (243)
                      .+| .+. +......-+.   .|.+++++++|+ +|++....+-+..         .+      .   .....+  ..-+
T Consensus       179 vID~~t~-~v~~qI~Vgg---~pd~~~~spdGk~~~vt~~~se~~~~i~~~~~~~~d~v~V~~~~~~~~~v~~Gk~~~i~  254 (595)
T 1fwx_A          179 AVDADKW-EVAWQVLVSG---NLDNCDADYEGKWAFSTSYNSEKGMTLPEMTAAEMDHIVVFNIAEIEKAIAAGDYQELN  254 (595)
T ss_dssp             EEETTTT-EEEEEEEESS---CCCCEEECSSSSEEEEEESCTTCCSSHHHHTCCSEEEEEEEEHHHHHHHHHHTCSEEET
T ss_pred             EEECCCC-eEEEEEEeCC---CccceEECCCCCEEEEEecCcccCcchhhccccccceEEEeeccceeEeccCCCeeEEC
Confidence            666 443 2222222111   477889999987 5555533211100         00      0   000001  0114


Q ss_pred             eEEEEeCCC--Cee-EEeeccccccceEEEcCCCCEEEEEEcCCCeEEEEEeecC------CCc-ceEEecc-CCCCCCC
Q 026118          133 VLLKYDPST--NQT-SLVLDGLYFANGVALSEDERFLVVCESWKFRCVKHFLKVS------GRT-DREIFID-NLPGGPD  201 (243)
Q Consensus       133 ~v~~~~~~~--~~~-~~~~~~~~~~~gi~~~~dg~~l~v~~~~~~~i~~~~~~~~------~~~-~~~~~~~-~~~~~~~  201 (243)
                      .|..+|..+  ++. .........|.|+.++|||+++|+++...+.|..|+.+..      .+. ...+... .....|.
T Consensus       255 ~V~VID~~~~~~~~~~~~Ipvg~~PhGv~~sPDGk~v~V~~~~s~~VsVid~~~~~~~~~~~l~~~~~v~~~v~vG~gP~  334 (595)
T 1fwx_A          255 GVKVVDGRKEASSLFTRYIPIANNPHGCNMAPDKKHLCVAGKLSPTVTVLDVTRFDAVFYENADPRSAVVAEPELGLGPL  334 (595)
T ss_dssp             TEEEEECSGGGCCSSEEEEEEESSCCCEEECTTSSEEEEECTTSSBEEEEEGGGHHHHHHSCCCGGGGEEECCBCCSCEE
T ss_pred             cEEEEeCcccCCceeEEEEecCCCceEEEEcCCCCEEEEeCCCCCeEEEEECcccccccccccCcccceEEEcCCCCCcc
Confidence            588899986  333 2333334689999999999999999999999999998732      111 1112222 2234699


Q ss_pred             ceEECCCCCEEEEEecCC
Q 026118          202 NVNLARDGSFWISIIKMD  219 (243)
Q Consensus       202 ~i~~d~~G~lwv~~~~~~  219 (243)
                      .+++|++|++|++..-.+
T Consensus       335 h~aF~~dG~aY~t~~lds  352 (595)
T 1fwx_A          335 HTAFDGRGNAYTSLFLDS  352 (595)
T ss_dssp             EEEECTTSEEEEEETTTT
T ss_pred             eEEECCCCeEEEEEecCC
Confidence            999999999999876554

>1jmx_B Amine dehydrogenase; oxidoreductase; HET: TRQ HEC; 1.90A {Pseudomonas putida} SCOP: b.69.2.2 PDB: 1jmz_B*

Probab=98.91  E-value=1.1e-07  Score=76.70  Aligned_cols=138  Identities=14%  Similarity=0.071  Sum_probs=90.9

Q ss_pred             ceEEccCCCEEEEEeC-CCcEEEEe-cCC-cEEEEeccCCCcccCCccEEEcCCCc-EEEEeCCCCCCcccccccccccC
Q 026118           54 GLTTTKENNVIIVCDS-QQGLLKVS-EEG-VTVLVSQFNGSQLRFANDVIEASDGS-LYFTVSSTKFTPAEYYLDLVSGE  129 (243)
Q Consensus        54 ~i~~~~~g~l~~v~~~-~~gl~~~~-~~g-~~~~~~~~~~~~~~~~~~l~~d~~G~-l~v~~~~~~~~~~~~~~~~~~~~  129 (243)
                      |+++.+++++ |++.. ...|..+| .++ .......   .....+.+++++++|+ +|++..                 
T Consensus         4 g~~~~~~~~~-~v~~~~~~~v~~~d~~~~~~~~~~~~---~~~~~~~~~~~s~dg~~~~v~~~-----------------   62 (349)
T 1jmx_B            4 GPALKAGHEY-MIVTNYPNNLHVVDVASDTVYKSCVM---PDKFGPGTAMMAPDNRTAYVLNN-----------------   62 (349)
T ss_dssp             CCCCCTTCEE-EEEEETTTEEEEEETTTTEEEEEEEC---SSCCSSCEEEECTTSSEEEEEET-----------------
T ss_pred             cccccCCCEE-EEEeCCCCeEEEEECCCCcEEEEEec---CCCCCCceeEECCCCCEEEEEeC-----------------
Confidence            6777788887 66554 45688888 666 3222211   1112467889999997 777743                 


Q ss_pred             CCceEEEEeCCCCeeEEeecc-------ccccceEEEcCCCCEEEEEEcC-----------CCeEEEEEeecCCCcc-eE
Q 026118          130 PHGVLLKYDPSTNQTSLVLDG-------LYFANGVALSEDERFLVVCESW-----------KFRCVKHFLKVSGRTD-RE  190 (243)
Q Consensus       130 ~~g~v~~~~~~~~~~~~~~~~-------~~~~~gi~~~~dg~~l~v~~~~-----------~~~i~~~~~~~~~~~~-~~  190 (243)
                      ..+.|+.+|.++++.......       ...+.+++++|+|++||++...           .+.|+.+++....... ..
T Consensus        63 ~~~~i~~~d~~t~~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~  142 (349)
T 1jmx_B           63 HYGDIYGIDLDTCKNTFHANLSSVPGEVGRSMYSFAISPDGKEVYATVNPTQRLNDHYVVKPPRLEVFSTADGLEAKPVR  142 (349)
T ss_dssp             TTTEEEEEETTTTEEEEEEESCCSTTEEEECSSCEEECTTSSEEEEEEEEEEECSSCEEECCCEEEEEEGGGGGGBCCSE
T ss_pred             CCCcEEEEeCCCCcEEEEEEcccccccccccccceEECCCCCEEEEEcccccccccccccCCCeEEEEECCCccccceee
Confidence            235799999988876543321       2237899999999999998743           4789999987532211 12


Q ss_pred             EeccCCCCCCCceEECCCCCEEEE
Q 026118          191 IFIDNLPGGPDNVNLARDGSFWIS  214 (243)
Q Consensus       191 ~~~~~~~~~~~~i~~d~~G~lwv~  214 (243)
                      .+.  .+..+.+++++++|++|++
T Consensus       143 ~~~--~~~~~~~~~~s~dg~l~~~  164 (349)
T 1jmx_B          143 TFP--MPRQVYLMRAADDGSLYVA  164 (349)
T ss_dssp             EEE--CCSSCCCEEECTTSCEEEE
T ss_pred             ecc--CCCcccceeECCCCcEEEc
Confidence            221  2235778889999998884

>2ojh_A Uncharacterized protein ATU1656/AGR_C_3050; TOLB, 6-stranded beta-propeller, structural genomics, PSI-2; 1.85A {Agrobacterium tumefaciens str}

Probab=98.91  E-value=3e-07  Score=71.95  Aligned_cols=184  Identities=14%  Similarity=0.045  Sum_probs=109.9

Q ss_pred             CcccEEEcCCCc-EEEEe----CCCcEEEEcc-CCceeEecccCCccccceEEccCCCEEEE-EeCCC--cEEEEe-cCC
Q 026118           11 HPEDVSVDGNGV-LYTAT----GDGWIKRMHP-NGTWEDWHQVGSQSLLGLTTTKENNVIIV-CDSQQ--GLLKVS-EEG   80 (243)
Q Consensus        11 ~p~~i~~d~~g~-l~~~~----~~~~i~~~~~-~g~~~~~~~~~~~~~~~i~~~~~g~l~~v-~~~~~--gl~~~~-~~g   80 (243)
                      ...++++.++|. |+++.    ....|+.++. .++...+... .... .++++++|+.+++ +....  .|+.++ .++
T Consensus        86 ~~~~~~~spdg~~l~~~~~~~~~~~~l~~~~~~~~~~~~~~~~-~~~~-~~~~spdg~~l~~~~~~~~~~~l~~~~~~~~  163 (297)
T 2ojh_A           86 CNNDHGISPDGALYAISDKVEFGKSAIYLLPSTGGTPRLMTKN-LPSY-WHGWSPDGKSFTYCGIRDQVFDIYSMDIDSG  163 (297)
T ss_dssp             BCSCCEECTTSSEEEEEECTTTSSCEEEEEETTCCCCEECCSS-SSEE-EEEECTTSSEEEEEEEETTEEEEEEEETTTC
T ss_pred             cccceEECCCCCEEEEEEeCCCCcceEEEEECCCCceEEeecC-CCcc-ceEECCCCCEEEEEECCCCceEEEEEECCCC
Confidence            346689999886 44444    1357888874 4444443322 2244 7889999986453 33333  366666 444


Q ss_pred             -cEEEEeccCCCcccCCccEEEcCCCc-EEEEeCCCCCCcccccccccccCCCceEEEEeCCCCeeEEeeccccccceEE
Q 026118           81 -VTVLVSQFNGSQLRFANDVIEASDGS-LYFTVSSTKFTPAEYYLDLVSGEPHGVLLKYDPSTNQTSLVLDGLYFANGVA  158 (243)
Q Consensus        81 -~~~~~~~~~~~~~~~~~~l~~d~~G~-l~v~~~~~~~~~~~~~~~~~~~~~~g~v~~~~~~~~~~~~~~~~~~~~~gi~  158 (243)
                       ...+..     ....+.+++++++|+ ++++...               .....||.++.+++....+.........++
T Consensus       164 ~~~~~~~-----~~~~~~~~~~s~dg~~l~~~~~~---------------~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~  223 (297)
T 2ojh_A          164 VETRLTH-----GEGRNDGPDYSPDGRWIYFNSSR---------------TGQMQIWRVRVDGSSVERITDSAYGDWFPH  223 (297)
T ss_dssp             CEEECCC-----SSSCEEEEEECTTSSEEEEEECT---------------TSSCEEEEEETTSSCEEECCCCSEEEEEEE
T ss_pred             cceEccc-----CCCccccceECCCCCEEEEEecC---------------CCCccEEEECCCCCCcEEEecCCcccCCeE
Confidence             332221     113456789999997 4444321               123579999977677666554444556789


Q ss_pred             EcCCCCEEEEEEcC----------CCeEEEEEeecCCCcceEEeccCCCCCCCceEECCCCC-EEEEEec
Q 026118          159 LSEDERFLVVCESW----------KFRCVKHFLKVSGRTDREIFIDNLPGGPDNVNLARDGS-FWISIIK  217 (243)
Q Consensus       159 ~~~dg~~l~v~~~~----------~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~i~~d~~G~-lwv~~~~  217 (243)
                      |+|+|++|+++...          ...|+.++.++........+. ........++++++|+ |+++...
T Consensus       224 ~s~dg~~l~~~~~~~~~~~~~~~~~~~l~~~d~~~~~~~~~~~~~-~~~~~~~~~~~spdg~~l~~~~~~  292 (297)
T 2ojh_A          224 PSPSGDKVVFVSYDADVFDHPRDLDVRVQLMDMDGGNVETLFDLF-GGQGTMNSPNWSPDGDEFAYVRYF  292 (297)
T ss_dssp             ECTTSSEEEEEEEETTCCSCCSSEEEEEEEEETTSCSCEEEEEEE-ESTTTSCSCCBCTTSSEEEEEEEC
T ss_pred             ECCCCCEEEEEEcCCCCCcccccCceEEEEEecCCCCceeeeccC-CCCcccccceECCCCCEEEEEEec
Confidence            99999988776542          256888887764332222211 1233456788999998 5555444

>4ery_A WD repeat-containing protein 5; WD40, WIN motif, beta propeller, 3-10 helix, lysine methyltransferase, RBBP5, ASH2L, core complex; 1.30A {Homo sapiens} PDB: 2h6k_A* 2h68_A* 2h6q_A* 3eg6_A 4erq_A 2h6n_A 4erz_A 4es0_A 4esg_A 4ewr_A 2gnq_A 2xl2_A 2xl3_A 3uvk_A* 3psl_A* 3uvl_A 3uvm_A 3uvn_A 3uvo_A 2h14_A ...

Probab=98.89  E-value=2.8e-06  Score=67.64  Aligned_cols=182  Identities=15%  Similarity=0.135  Sum_probs=112.3

Q ss_pred             CCcccEEEcCCCc-EEEEeCCCcEEEEc-cCCceeEecccCCccccceEEccCCCEEEEEeCCCcEEEEe-cCC-c-EEE
Q 026118           10 NHPEDVSVDGNGV-LYTATGDGWIKRMH-PNGTWEDWHQVGSQSLLGLTTTKENNVIIVCDSQQGLLKVS-EEG-V-TVL   84 (243)
Q Consensus        10 ~~p~~i~~d~~g~-l~~~~~~~~i~~~~-~~g~~~~~~~~~~~~~~~i~~~~~g~l~~v~~~~~gl~~~~-~~g-~-~~~   84 (243)
                      ..-.++++.++|. |..+..++.|..++ .+++..........+...+++++++++++.+..++.+..++ .++ . ..+
T Consensus        24 ~~v~~~~~s~~~~~l~s~~~dg~i~iw~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~d~~i~vwd~~~~~~~~~~  103 (312)
T 4ery_A           24 KAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTL  103 (312)
T ss_dssp             SCEEEEEECTTSSEEEEEETTSCEEEEETTTCCEEEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTCCEEEEE
T ss_pred             CcEEEEEECCCCCEEEEeeCCCeEEEEeCCCcccchhhccCCCceEEEEEcCCCCEEEEECCCCEEEEEECCCCcEEEEE
Confidence            3456788999886 44556888899998 45554433222222333789999999856666555577777 555 2 222


Q ss_pred             EeccCCCcccCCccEEEcCCCcEEEEeCCCCCCcccccccccccCCCceEEEEeCCCCeeEEeec-cccccceEEEcCCC
Q 026118           85 VSQFNGSQLRFANDVIEASDGSLYFTVSSTKFTPAEYYLDLVSGEPHGVLLKYDPSTNQTSLVLD-GLYFANGVALSEDE  163 (243)
Q Consensus        85 ~~~~~~~~~~~~~~l~~d~~G~l~v~~~~~~~~~~~~~~~~~~~~~~g~v~~~~~~~~~~~~~~~-~~~~~~gi~~~~dg  163 (243)
                      ..     ....+.++++.++++++++.+                 ..+.|..+|..+++...... .......+++++++
T Consensus       104 ~~-----~~~~v~~~~~~~~~~~l~s~~-----------------~d~~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~  161 (312)
T 4ery_A          104 KG-----HSNYVFCCNFNPQSNLIVSGS-----------------FDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDG  161 (312)
T ss_dssp             EC-----CSSCEEEEEECSSSSEEEEEE-----------------TTSCEEEEETTTCCEEEEECCCSSCEEEEEECTTS
T ss_pred             cC-----CCCCEEEEEEcCCCCEEEEEe-----------------CCCcEEEEECCCCEEEEEecCCCCcEEEEEEcCCC
Confidence            21     123466788999998777632                 23578888888766544332 23445789999999


Q ss_pred             CEEEEEEcCCCeEEEEEeecCCCcceEEeccCCCCCCCceEECCCCCEEEEEe
Q 026118          164 RFLVVCESWKFRCVKHFLKVSGRTDREIFIDNLPGGPDNVNLARDGSFWISII  216 (243)
Q Consensus       164 ~~l~v~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~i~~d~~G~lwv~~~  216 (243)
                      +.++.+ ..++.|..|+.....  ....+..........++++++|++.++..
T Consensus       162 ~~l~~~-~~d~~i~~wd~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~l~~~~  211 (312)
T 4ery_A          162 SLIVSS-SYDGLCRIWDTASGQ--CLKTLIDDDNPPVSFVKFSPNGKYILAAT  211 (312)
T ss_dssp             SEEEEE-ETTSCEEEEETTTCC--EEEEECCSSCCCEEEEEECTTSSEEEEEE
T ss_pred             CEEEEE-eCCCcEEEEECCCCc--eeeEEeccCCCceEEEEECCCCCEEEEEc
Confidence            955555 567889999876431  11222211122234578888888555443

>2ojh_A Uncharacterized protein ATU1656/AGR_C_3050; TOLB, 6-stranded beta-propeller, structural genomics, PSI-2; 1.85A {Agrobacterium tumefaciens str}

Probab=98.88  E-value=6.5e-07  Score=69.96  Aligned_cols=180  Identities=11%  Similarity=0.032  Sum_probs=108.1

Q ss_pred             CcccEEEcCCCcEEEEeCCCcEEEEcc-C-CceeEecccC--CccccceEEccCCCEEEEEeC----CCcEEEEe-cCC-
Q 026118           11 HPEDVSVDGNGVLYTATGDGWIKRMHP-N-GTWEDWHQVG--SQSLLGLTTTKENNVIIVCDS----QQGLLKVS-EEG-   80 (243)
Q Consensus        11 ~p~~i~~d~~g~l~~~~~~~~i~~~~~-~-g~~~~~~~~~--~~~~~~i~~~~~g~l~~v~~~----~~gl~~~~-~~g-   80 (243)
                      ...++++.++|..++...++.|+.++. . ++........  .... .++++++|++++++..    ...|+.++ .++ 
T Consensus        43 ~v~~~~~spdg~~l~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~-~~~~spdg~~l~~~~~~~~~~~~l~~~~~~~~~  121 (297)
T 2ojh_A           43 LFEAPNWSPDGKYLLLNSEGLLYRLSLAGDPSPEKVDTGFATICNN-DHGISPDGALYAISDKVEFGKSAIYLLPSTGGT  121 (297)
T ss_dssp             CCEEEEECTTSSEEEEEETTEEEEEESSSCCSCEECCCTTCCCBCS-CCEECTTSSEEEEEECTTTSSCEEEEEETTCCC
T ss_pred             ceEeeEECCCCCEEEEEcCCeEEEEeCCCCCCceEecccccccccc-ceEECCCCCEEEEEEeCCCCcceEEEEECCCCc
Confidence            466789999997555555778999984 4 5544433221  2234 7899999997566552    23577777 444 


Q ss_pred             cEEEEeccCCCcccCCccEEEcCCCc-EEEEeCCCCCCcccccccccccCCCceEEEEeCCCCeeEEeeccccccceEEE
Q 026118           81 VTVLVSQFNGSQLRFANDVIEASDGS-LYFTVSSTKFTPAEYYLDLVSGEPHGVLLKYDPSTNQTSLVLDGLYFANGVAL  159 (243)
Q Consensus        81 ~~~~~~~~~~~~~~~~~~l~~d~~G~-l~v~~~~~~~~~~~~~~~~~~~~~~g~v~~~~~~~~~~~~~~~~~~~~~gi~~  159 (243)
                      ...+...      ..+..++++|+|+ ++++...               ...-.||.++.++++...+.........+++
T Consensus       122 ~~~~~~~------~~~~~~~~spdg~~l~~~~~~---------------~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~  180 (297)
T 2ojh_A          122 PRLMTKN------LPSYWHGWSPDGKSFTYCGIR---------------DQVFDIYSMDIDSGVETRLTHGEGRNDGPDY  180 (297)
T ss_dssp             CEECCSS------SSEEEEEECTTSSEEEEEEEE---------------TTEEEEEEEETTTCCEEECCCSSSCEEEEEE
T ss_pred             eEEeecC------CCccceEECCCCCEEEEEECC---------------CCceEEEEEECCCCcceEcccCCCccccceE
Confidence            4332211      1255678999997 4434211               1123688888887777666555556788999


Q ss_pred             cCCCCEEEEEEcCC--CeEEEEEeecCCCcceEEeccCCCCCCCceEECCCCC-EEEEEe
Q 026118          160 SEDERFLVVCESWK--FRCVKHFLKVSGRTDREIFIDNLPGGPDNVNLARDGS-FWISII  216 (243)
Q Consensus       160 ~~dg~~l~v~~~~~--~~i~~~~~~~~~~~~~~~~~~~~~~~~~~i~~d~~G~-lwv~~~  216 (243)
                      +|+|+.|+++...+  ..|+.++..+.   ....+. ........++++++|+ |+++..
T Consensus       181 s~dg~~l~~~~~~~~~~~i~~~~~~~~---~~~~~~-~~~~~~~~~~~s~dg~~l~~~~~  236 (297)
T 2ojh_A          181 SPDGRWIYFNSSRTGQMQIWRVRVDGS---SVERIT-DSAYGDWFPHPSPSGDKVVFVSY  236 (297)
T ss_dssp             CTTSSEEEEEECTTSSCEEEEEETTSS---CEEECC-CCSEEEEEEEECTTSSEEEEEEE
T ss_pred             CCCCCEEEEEecCCCCccEEEECCCCC---CcEEEe-cCCcccCCeEECCCCCEEEEEEc
Confidence            99999888775433  44555553332   122221 1112334577888887 444444

>2ymu_A WD-40 repeat protein; unknown function, two domains; 1.79A {Nostoc punctiforme}

Probab=98.87  E-value=9.6e-07  Score=76.31  Aligned_cols=179  Identities=14%  Similarity=0.067  Sum_probs=111.2

Q ss_pred             CcccEEEcCCCcE-EEEeCCCcEEEEccCCceeEecc-cCCccccceEEccCCCEEEEEeCCCcEEEEecCC--cEEEEe
Q 026118           11 HPEDVSVDGNGVL-YTATGDGWIKRMHPNGTWEDWHQ-VGSQSLLGLTTTKENNVIIVCDSQQGLLKVSEEG--VTVLVS   86 (243)
Q Consensus        11 ~p~~i~~d~~g~l-~~~~~~~~i~~~~~~g~~~~~~~-~~~~~~~~i~~~~~g~l~~v~~~~~gl~~~~~~g--~~~~~~   86 (243)
                      ...++++.++|.. ..+..++.|..++.+++...... ...... +++++++|++|.++..++.|..++.++  ...+..
T Consensus       346 ~v~~~~~s~~g~~l~~~~~dg~v~~~~~~~~~~~~~~~~~~~v~-~~~~s~dg~~l~~~~~d~~v~~~~~~~~~~~~~~~  424 (577)
T 2ymu_A          346 SVWGVAFSPDGQTIASASDDKTVKLWNRNGQLLQTLTGHSSSVR-GVAFSPDGQTIASASDDKTVKLWNRNGQLLQTLTG  424 (577)
T ss_dssp             CEEEEEECTTSSEEEEEETTSEEEEEETTCCEEEEEECCSSCEE-EEEECTTSSCEEEEETTSEEEEECTTCCEEEEEEC
T ss_pred             CEEEEEECCCCCEEEEEeCCCEEEEEcCCCCEEEEecCCCCCeE-EEEECCCCCEEEEEeCCCEEEEEeCCCCEEEEecC
Confidence            4557888998864 45557888888886665433222 223334 899999999855555444466666544  333221


Q ss_pred             ccCCCcccCCccEEEcCCCcEEEEeCCCCCCcccccccccccCCCceEEEEeCCCCeeEEeeccccccceEEEcCCCCEE
Q 026118           87 QFNGSQLRFANDVIEASDGSLYFTVSSTKFTPAEYYLDLVSGEPHGVLLKYDPSTNQTSLVLDGLYFANGVALSEDERFL  166 (243)
Q Consensus        87 ~~~~~~~~~~~~l~~d~~G~l~v~~~~~~~~~~~~~~~~~~~~~~g~v~~~~~~~~~~~~~~~~~~~~~gi~~~~dg~~l  166 (243)
                           ....+.+++++|++++.++.+                 ..+.|..++..+..+..+.........++|+|++++|
T Consensus       425 -----~~~~v~~~~~s~d~~~l~~~~-----------------~d~~v~~w~~~~~~~~~~~~~~~~v~~~~~spd~~~l  482 (577)
T 2ymu_A          425 -----HSSSVWGVAFSPDDQTIASAS-----------------DDKTVKLWNRNGQLLQTLTGHSSSVRGVAFSPDGQTI  482 (577)
T ss_dssp             -----CSSCEEEEEECTTSSEEEEEE-----------------TTSEEEEEETTSCEEEEEECCSSCEEEEEECTTSCEE
T ss_pred             -----CCCCeEEEEECCCCCEEEEEc-----------------CCCEEEEEECCCCEEEEEcCCCCCEEEEEEcCCCCEE
Confidence                 123456889999998777632                 2356777787644444444444556789999999955


Q ss_pred             EEEEcCCCeEEEEEeecCCCcceEEeccCCCCCCCceEECCCCCEEEEEec
Q 026118          167 VVCESWKFRCVKHFLKVSGRTDREIFIDNLPGGPDNVNLARDGSFWISIIK  217 (243)
Q Consensus       167 ~v~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~i~~d~~G~lwv~~~~  217 (243)
                      ..+ ..++.|..++.++.   ..+.+. ........++++++|++.++...
T Consensus       483 as~-~~d~~i~iw~~~~~---~~~~~~-~h~~~v~~l~~s~dg~~l~s~~~  528 (577)
T 2ymu_A          483 ASA-SDDKTVKLWNRNGQ---LLQTLT-GHSSSVRGVAFSPDGQTIASASD  528 (577)
T ss_dssp             EEE-ETTSEEEEEETTSC---EEEEEE-CCSSCEEEEEECTTSSCEEEEET
T ss_pred             EEE-eCCCEEEEEcCCCC---EEEEEe-CCCCCEEEEEEcCCCCEEEEEEC
Confidence            554 56788988886442   122222 22234566888899885554433

>2hqs_A Protein TOLB; TOLB, PAL, TOL, transport protein-lipoprotein complex; 1.50A {Escherichia coli} SCOP: b.68.4.1 c.51.2.1 PDB: 3iax_A 1c5k_A 2ivz_A 2w8b_B 2w8b_A 1crz_A

Probab=98.86  E-value=8.5e-07  Score=74.12  Aligned_cols=161  Identities=15%  Similarity=0.083  Sum_probs=100.3

Q ss_pred             CcEEEEccCC-ceeEecccCCccccceEEccCCCEEEEEeCCC---cEEEEe-cCC-cEEEEeccCCCcccCCccEEEcC
Q 026118           30 GWIKRMHPNG-TWEDWHQVGSQSLLGLTTTKENNVIIVCDSQQ---GLLKVS-EEG-VTVLVSQFNGSQLRFANDVIEAS  103 (243)
Q Consensus        30 ~~i~~~~~~g-~~~~~~~~~~~~~~~i~~~~~g~l~~v~~~~~---gl~~~~-~~g-~~~~~~~~~~~~~~~~~~l~~d~  103 (243)
                      +.|+.++.++ ....+........ +++++|+|+.++++....   .|+.++ .++ .+.+...     ...+.+++++|
T Consensus       159 ~~i~i~d~~g~~~~~l~~~~~~v~-~~~~Spdg~~la~~s~~~~~~~i~~~d~~tg~~~~l~~~-----~~~~~~~~~sp  232 (415)
T 2hqs_A          159 YELRVSDYDGYNQFVVHRSPQPLM-SPAWSPDGSKLAYVTFESGRSALVIQTLANGAVRQVASF-----PRHNGAPAFSP  232 (415)
T ss_dssp             EEEEEEETTSCSCEEEEEESSCEE-EEEECTTSSEEEEEECTTSSCEEEEEETTTCCEEEEECC-----SSCEEEEEECT
T ss_pred             ceEEEEcCCCCCCEEEeCCCCcce-eeEEcCCCCEEEEEEecCCCcEEEEEECCCCcEEEeecC-----CCcccCEEEcC
Confidence            5788888544 3333332223344 889999998755555443   588888 666 4443321     12456789999


Q ss_pred             CCc-EEEEeCCCCCCcccccccccccCCCceEEEEeCCCCeeEEeeccccccceEEEcCCCCEEEEEEcCC--CeEEEEE
Q 026118          104 DGS-LYFTVSSTKFTPAEYYLDLVSGEPHGVLLKYDPSTNQTSLVLDGLYFANGVALSEDERFLVVCESWK--FRCVKHF  180 (243)
Q Consensus       104 ~G~-l~v~~~~~~~~~~~~~~~~~~~~~~g~v~~~~~~~~~~~~~~~~~~~~~gi~~~~dg~~l~v~~~~~--~~i~~~~  180 (243)
                      ||+ |+++.+.               .....|+.+|.++++...+.........++|+|||++|+++...+  ..|+.++
T Consensus       233 dg~~la~~~~~---------------~g~~~i~~~d~~~~~~~~l~~~~~~~~~~~~spdg~~l~~~s~~~g~~~i~~~d  297 (415)
T 2hqs_A          233 DGSKLAFALSK---------------TGSLNLYVMDLASGQIRQVTDGRSNNTEPTWFPDSQNLAFTSDQAGRPQVYKVN  297 (415)
T ss_dssp             TSSEEEEEECT---------------TSSCEEEEEETTTCCEEECCCCSSCEEEEEECTTSSEEEEEECTTSSCEEEEEE
T ss_pred             CCCEEEEEEec---------------CCCceEEEEECCCCCEEeCcCCCCcccceEECCCCCEEEEEECCCCCcEEEEEE
Confidence            998 5545322               123469999999888776655445567899999999888776433  3788888


Q ss_pred             eecCCCcceEEeccCCCCCCCceEECCCCC-EEEEE
Q 026118          181 LKVSGRTDREIFIDNLPGGPDNVNLARDGS-FWISI  215 (243)
Q Consensus       181 ~~~~~~~~~~~~~~~~~~~~~~i~~d~~G~-lwv~~  215 (243)
                      ..+...   ..+. ........++++++|+ |+++.
T Consensus       298 ~~~~~~---~~l~-~~~~~~~~~~~spdG~~l~~~~  329 (415)
T 2hqs_A          298 INGGAP---QRIT-WEGSQNQDADVSSDGKFMVMVS  329 (415)
T ss_dssp             TTSSCC---EECC-CSSSEEEEEEECTTSSEEEEEE
T ss_pred             CCCCCE---EEEe-cCCCcccCeEECCCCCEEEEEE
Confidence            765322   2221 1122344578888887 44443

>3ei3_B DNA damage-binding protein 2; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Danio rerio} PDB: 3ei1_B* 3ei2_B* 4a08_B* 4a09_B* 4a0a_B* 4a0b_B* 4a0k_D* 4a0l_B*

Probab=98.86  E-value=1.3e-06  Score=71.63  Aligned_cols=185  Identities=9%  Similarity=-0.023  Sum_probs=114.3

Q ss_pred             CcccEEEcCCC-c-EEEEeCCCcEEEEcc-CCceeEecc---cCCccccceEEcc-CCCEEEEEeCCCcEEEEe-cCC-c
Q 026118           11 HPEDVSVDGNG-V-LYTATGDGWIKRMHP-NGTWEDWHQ---VGSQSLLGLTTTK-ENNVIIVCDSQQGLLKVS-EEG-V   81 (243)
Q Consensus        11 ~p~~i~~d~~g-~-l~~~~~~~~i~~~~~-~g~~~~~~~---~~~~~~~~i~~~~-~g~l~~v~~~~~gl~~~~-~~g-~   81 (243)
                      ...++++.++| . |..+..++.|..++. .++......   ...... ++++++ ++++++++..++.+..++ .+. .
T Consensus        75 ~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~h~~~v~-~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~  153 (383)
T 3ei3_B           75 RVTSLEWHPTHPTTVAVGSKGGDIILWDYDVQNKTSFIQGMGPGDAIT-GMKFNQFNTNQLFVSSIRGATTLRDFSGSVI  153 (383)
T ss_dssp             CEEEEEECSSCTTEEEEEEBTSCEEEEETTSTTCEEEECCCSTTCBEE-EEEEETTEEEEEEEEETTTEEEEEETTSCEE
T ss_pred             CEEEEEECCCCCCEEEEEcCCCeEEEEeCCCcccceeeecCCcCCcee-EEEeCCCCCCEEEEEeCCCEEEEEECCCCce
Confidence            45678889887 4 556668899999984 344333221   122334 889998 667756666555577777 444 3


Q ss_pred             EEEEeccCCCcccCCccEEEcCCCcEEEEeCCCCCCcccccccccccCCCceEEEEeCCCCeeEEeeccccccceEEEcC
Q 026118           82 TVLVSQFNGSQLRFANDVIEASDGSLYFTVSSTKFTPAEYYLDLVSGEPHGVLLKYDPSTNQTSLVLDGLYFANGVALSE  161 (243)
Q Consensus        82 ~~~~~~~~~~~~~~~~~l~~d~~G~l~v~~~~~~~~~~~~~~~~~~~~~~g~v~~~~~~~~~~~~~~~~~~~~~gi~~~~  161 (243)
                      ..+... .. ....+.++++.++++++++.+                 ..+.|..+|........+.........+++++
T Consensus       154 ~~~~~~-~~-~~~~v~~~~~~~~~~~l~~~~-----------------~d~~i~i~d~~~~~~~~~~~h~~~v~~~~~~~  214 (383)
T 3ei3_B          154 QVFAKT-DS-WDYWYCCVDVSVSRQMLATGD-----------------STGRLLLLGLDGHEIFKEKLHKAKVTHAEFNP  214 (383)
T ss_dssp             EEEECC-CC-SSCCEEEEEEETTTTEEEEEE-----------------TTSEEEEEETTSCEEEEEECSSSCEEEEEECS
T ss_pred             EEEecc-CC-CCCCeEEEEECCCCCEEEEEC-----------------CCCCEEEEECCCCEEEEeccCCCcEEEEEECC
Confidence            333321 11 123467889999998776632                 24678888886444444444455678899999


Q ss_pred             CCCEEEEEEcCCCeEEEEEeecCCC-cc-eEEeccCCCCCCCceEECC-CCCEEEEEec
Q 026118          162 DERFLVVCESWKFRCVKHFLKVSGR-TD-REIFIDNLPGGPDNVNLAR-DGSFWISIIK  217 (243)
Q Consensus       162 dg~~l~v~~~~~~~i~~~~~~~~~~-~~-~~~~~~~~~~~~~~i~~d~-~G~lwv~~~~  217 (243)
                      +++.++++...++.|..|++..... .. ...+  ........+++++ +|++.++...
T Consensus       215 ~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~--~~~~~v~~~~~s~~~~~~l~~~~~  271 (383)
T 3ei3_B          215 RCDWLMATSSVDATVKLWDLRNIKDKNSYIAEM--PHEKPVNAAYFNPTDSTKLLTTDQ  271 (383)
T ss_dssp             SCTTEEEEEETTSEEEEEEGGGCCSTTCEEEEE--ECSSCEEEEEECTTTSCEEEEEES
T ss_pred             CCCCEEEEEeCCCEEEEEeCCCCCcccceEEEe--cCCCceEEEEEcCCCCCEEEEEcC
Confidence            9984444545678999999875321 11 1222  2233456788988 8885554443

>1got_B GT-beta; complex (GTP-binding/transducer), G protein, heterotrimer signal transduction; HET: GDP; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1b9y_A 1b9x_A* 2trc_B 1tbg_A 1gg2_B* 1omw_B 1gp2_B 1xhm_A 2qns_A 3ah8_B* 3cik_B 3kj5_A 3krw_B* 3krx_B* 3psc_B 3pvu_B* 3pvw_B* 1a0r_B* 2bcj_B* 3sn6_B*

Probab=98.86  E-value=1.5e-06  Score=70.49  Aligned_cols=178  Identities=12%  Similarity=0.112  Sum_probs=110.0

Q ss_pred             ccEEEcCCCcEEEEeCCCcEEEEc-cCCcee-EecccCCccccceEEccCCCEEEEEeCCCcEEEEe-cCC-cEEEEecc
Q 026118           13 EDVSVDGNGVLYTATGDGWIKRMH-PNGTWE-DWHQVGSQSLLGLTTTKENNVIIVCDSQQGLLKVS-EEG-VTVLVSQF   88 (243)
Q Consensus        13 ~~i~~d~~g~l~~~~~~~~i~~~~-~~g~~~-~~~~~~~~~~~~i~~~~~g~l~~v~~~~~gl~~~~-~~g-~~~~~~~~   88 (243)
                      .++.+.+++.+..+..++.|..++ ..++.. .+........ .++++++++++..+..++.+..+| .++ ......  
T Consensus       147 ~~~~~~~~~~l~s~s~d~~i~~wd~~~~~~~~~~~~h~~~v~-~~~~~~~~~~l~sg~~d~~v~~wd~~~~~~~~~~~--  223 (340)
T 1got_B          147 SCCRFLDDNQIVTSSGDTTCALWDIETGQQTTTFTGHTGDVM-SLSLAPDTRLFVSGACDASAKLWDVREGMCRQTFT--  223 (340)
T ss_dssp             EEEEEEETTEEEEEETTSCEEEEETTTTEEEEEECCCSSCEE-EEEECTTSSEEEEEETTSCEEEEETTTCSEEEEEC--
T ss_pred             EEEEECCCCcEEEEECCCcEEEEECCCCcEEEEEcCCCCceE-EEEECCCCCEEEEEeCCCcEEEEECCCCeeEEEEc--
Confidence            345566677777777888899998 445433 2222223334 889999999855665555677788 666 322211  


Q ss_pred             CCCcccCCccEEEcCCCcEEEEeCCCCCCcccccccccccCCCceEEEEeCCCCeeEEeecc---ccccceEEEcCCCCE
Q 026118           89 NGSQLRFANDVIEASDGSLYFTVSSTKFTPAEYYLDLVSGEPHGVLLKYDPSTNQTSLVLDG---LYFANGVALSEDERF  165 (243)
Q Consensus        89 ~~~~~~~~~~l~~d~~G~l~v~~~~~~~~~~~~~~~~~~~~~~g~v~~~~~~~~~~~~~~~~---~~~~~gi~~~~dg~~  165 (243)
                       + ....+.++++.|+|+++++.+                 ..+.|..+|..+++.......   ......++|+|+|++
T Consensus       224 -~-h~~~v~~v~~~p~~~~l~s~s-----------------~d~~v~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~  284 (340)
T 1got_B          224 -G-HESDINAICFFPNGNAFATGS-----------------DDATCRLFDLRADQELMTYSHDNIICGITSVSFSKSGRL  284 (340)
T ss_dssp             -C-CSSCEEEEEECTTSSEEEEEE-----------------TTSCEEEEETTTTEEEEEECCTTCCSCEEEEEECTTSSE
T ss_pred             -C-CcCCEEEEEEcCCCCEEEEEc-----------------CCCcEEEEECCCCcEEEEEccCCcccceEEEEECCCCCE
Confidence             1 123567889999998877643                 235677888876654332221   123567999999995


Q ss_pred             EEEEEcCCCeEEEEEeecCCCcceEEeccCCCCCCCceEECCCCCEEEEEe
Q 026118          166 LVVCESWKFRCVKHFLKVSGRTDREIFIDNLPGGPDNVNLARDGSFWISII  216 (243)
Q Consensus       166 l~v~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~i~~d~~G~lwv~~~  216 (243)
                      |..+ ..++.|..|+.....  ....+. .-.+....+++.++|++.++..
T Consensus       285 l~~g-~~d~~i~vwd~~~~~--~~~~~~-~h~~~v~~~~~s~dg~~l~s~s  331 (340)
T 1got_B          285 LLAG-YDDFNCNVWDALKAD--RAGVLA-GHDNRVSCLGVTDDGMAVATGS  331 (340)
T ss_dssp             EEEE-ETTSEEEEEETTTCC--EEEEEE-CCSSCEEEEEECTTSSCEEEEE
T ss_pred             EEEE-CCCCeEEEEEcccCc--EeeEee-cCCCcEEEEEEcCCCCEEEEEc
Confidence            5554 567889999875421  122222 2223456688899987555443

>2z3z_A Dipeptidyl aminopeptidase IV; peptidase family S9, prolyl oligopeptidase family, serine PR proline-specific peptidase, hydrolase; HET: AIO; 1.95A {Porphyromonas gingivalis} PDB: 2z3w_A* 2d5l_A 2eep_A* 2dcm_A*

Probab=98.85  E-value=1.2e-06  Score=77.80  Aligned_cols=183  Identities=13%  Similarity=0.072  Sum_probs=106.1

Q ss_pred             CcccEEEcCCCc-EEEEe---------------------------------CCCcEEEEcc-CCceeEeccc---CCccc
Q 026118           11 HPEDVSVDGNGV-LYTAT---------------------------------GDGWIKRMHP-NGTWEDWHQV---GSQSL   52 (243)
Q Consensus        11 ~p~~i~~d~~g~-l~~~~---------------------------------~~~~i~~~~~-~g~~~~~~~~---~~~~~   52 (243)
                      .+.++++.+||. |+++.                                 .+..|+.++. .++.......   .....
T Consensus       182 ~~~~~~~SpDg~~la~~~~d~~~~~~~~~~~~~~~~~~~~~~~y~~~g~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~  261 (706)
T 2z3z_A          182 IEKGTFWSPKGSCLAFYRMDQSMVKPTPIVDYHPLEAESKPLYYPMAGTPSHHVTVGIYHLATGKTVYLQTGEPKEKFLT  261 (706)
T ss_dssp             CCCSEEECTTSSEEEEEEEECTTSCCEEEEECCSSSCEEEEECCCBTTSCCCEEEEEEEETTTTEEEECCCCSCTTCEEE
T ss_pred             CCceEEECCCCCEEEEEEECCCCCceEEeeccCCCCCceEEeeCCCCCCCCCeeEEEEEECCCCceEeeccCCCCceeEe
Confidence            357899999995 55543                                 2245778874 4444333221   11233


Q ss_pred             cceEEccCCCEEEEEeCCC-----cEEEEe-cCC--cEEEEeccCCCcccCCccEEEcC--CCcEEEEeCCCCCCccccc
Q 026118           53 LGLTTTKENNVIIVCDSQQ-----GLLKVS-EEG--VTVLVSQFNGSQLRFANDVIEAS--DGSLYFTVSSTKFTPAEYY  122 (243)
Q Consensus        53 ~~i~~~~~g~l~~v~~~~~-----gl~~~~-~~g--~~~~~~~~~~~~~~~~~~l~~d~--~G~l~v~~~~~~~~~~~~~  122 (243)
                       .+++++||+.++++....     .|+.++ .++  .+.+.............+++++|  +|+++++...         
T Consensus       262 -~~~~spdg~~l~~~~~~~~~~~~~v~~~d~~~g~~~~~~~~~~~~~~~~~~~~~~~sp~~dg~~l~~~~~---------  331 (706)
T 2z3z_A          262 -NLSWSPDENILYVAEVNRAQNECKVNAYDAETGRFVRTLFVETDKHYVEPLHPLTFLPGSNNQFIWQSRR---------  331 (706)
T ss_dssp             -EEEECTTSSEEEEEEECTTSCEEEEEEEETTTCCEEEEEEEEECSSCCCCCSCCEECTTCSSEEEEEECT---------
T ss_pred             -eEEEECCCCEEEEEEeCCCCCeeEEEEEECCCCceeeEEEEccCCCeECccCCceeecCCCCEEEEEEcc---------
Confidence             688999999656654332     577888 555  23332211111112235678999  9986554322         


Q ss_pred             ccccccCCCceEEEEeCCCCeeEEeeccccccce-EEEcCCCCEEEEEEcCCC----eEEEEEeecCCCcceEEeccCCC
Q 026118          123 LDLVSGEPHGVLLKYDPSTNQTSLVLDGLYFANG-VALSEDERFLVVCESWKF----RCVKHFLKVSGRTDREIFIDNLP  197 (243)
Q Consensus       123 ~~~~~~~~~g~v~~~~~~~~~~~~~~~~~~~~~g-i~~~~dg~~l~v~~~~~~----~i~~~~~~~~~~~~~~~~~~~~~  197 (243)
                            .....||.++.+++..+.+..+...... ++++++|+.||++...++    .|++++.++..   .+.+.  ..
T Consensus       332 ------~g~~~l~~~~~~~~~~~~l~~~~~~v~~~~~~spdg~~l~~~~~~~~~~~~~l~~~d~~~~~---~~~l~--~~  400 (706)
T 2z3z_A          332 ------DGWNHLYLYDTTGRLIRQVTKGEWEVTNFAGFDPKGTRLYFESTEASPLERHFYCIDIKGGK---TKDLT--PE  400 (706)
T ss_dssp             ------TSSCEEEEEETTSCEEEECCCSSSCEEEEEEECTTSSEEEEEESSSCTTCBEEEEEETTCCC---CEESC--CS
T ss_pred             ------CCccEEEEEECCCCEEEecCCCCeEEEeeeEEcCCCCEEEEEecCCCCceEEEEEEEcCCCC---ceecc--CC
Confidence                  1234799999776666665443333344 799999998988876544    78888765432   22222  11


Q ss_pred             CCCCceEECCCCCEEEE
Q 026118          198 GGPDNVNLARDGSFWIS  214 (243)
Q Consensus       198 ~~~~~i~~d~~G~lwv~  214 (243)
                      .....++++++|+.++.
T Consensus       401 ~~~~~~~~spdg~~l~~  417 (706)
T 2z3z_A          401 SGMHRTQLSPDGSAIID  417 (706)
T ss_dssp             SSEEEEEECTTSSEEEE
T ss_pred             CceEEEEECCCCCEEEE
Confidence            22345777788774443

>3o4h_A Acylamino-acid-releasing enzyme; alpha/beta hydrolase fold, beta propeller, hydrolase, oligop SIZE selectivity; HET: GOL; 1.82A {Aeropyrum pernix} PDB: 3o4i_A 3o4j_A 2hu5_A* 1ve7_A* 1ve6_A* 2hu7_A* 3o4g_A 2hu8_A* 2qr5_A 2qzp_A

Probab=98.84  E-value=1.1e-07  Score=82.79  Aligned_cols=180  Identities=12%  Similarity=0.018  Sum_probs=107.2

Q ss_pred             ccEEEcCCCcEEEEeC---CC--cEEEEcc--CCceeEecccCCccccceEEccCCC-EEEEEeCCCcEEEEe-cCC-cE
Q 026118           13 EDVSVDGNGVLYTATG---DG--WIKRMHP--NGTWEDWHQVGSQSLLGLTTTKENN-VIIVCDSQQGLLKVS-EEG-VT   82 (243)
Q Consensus        13 ~~i~~d~~g~l~~~~~---~~--~i~~~~~--~g~~~~~~~~~~~~~~~i~~~~~g~-l~~v~~~~~gl~~~~-~~g-~~   82 (243)
                      .++++.+|..+|.+..   +.  .|+.++.  ++........ .... .++++++|+ ++++.....++..++ .++ .+
T Consensus        68 ~~~~~spd~~l~~~~~~~g~~~~~l~~~~~~~~g~~~~l~~~-~~~~-~~~~s~dg~~~~~~s~~~~~~~l~d~~~g~~~  145 (582)
T 3o4h_A           68 LDPHYGVGRVILVRDVSKGAEQHALFKVNTSRPGEEQRLEAV-KPMR-ILSGVDTGEAVVFTGATEDRVALYALDGGGLR  145 (582)
T ss_dssp             CEECTTCSEEEEEEECSTTSCCEEEEEEETTSTTCCEECTTS-CSBE-EEEEEECSSCEEEEEECSSCEEEEEEETTEEE
T ss_pred             ccccCCCCeEEEEeccCCCCcceEEEEEeccCCCccccccCC-CCce-eeeeCCCCCeEEEEecCCCCceEEEccCCcEE
Confidence            3455566644555543   22  4666765  5654433221 1222 445666664 326665556677778 666 54


Q ss_pred             EEEeccCCCcccCCccEEEcCCCcEEEEeCCCCCCcccccccccccCCCceEEEEeCCCCeeEEeeccccccceEEEcCC
Q 026118           83 VLVSQFNGSQLRFANDVIEASDGSLYFTVSSTKFTPAEYYLDLVSGEPHGVLLKYDPSTNQTSLVLDGLYFANGVALSED  162 (243)
Q Consensus        83 ~~~~~~~~~~~~~~~~l~~d~~G~l~v~~~~~~~~~~~~~~~~~~~~~~g~v~~~~~~~~~~~~~~~~~~~~~gi~~~~d  162 (243)
                      .+....      . .+++++|||+.++..+..             ......|+.+|.++++.+.+.........++|+||
T Consensus       146 ~l~~~~------~-~~~~~spDG~~la~~~~~-------------~~~~~~i~~~d~~~g~~~~l~~~~~~~~~~~~SpD  205 (582)
T 3o4h_A          146 ELARLP------G-FGFVSDIRGDLIAGLGFF-------------GGGRVSLFTSNLSSGGLRVFDSGEGSFSSASISPG  205 (582)
T ss_dssp             EEEEES------S-CEEEEEEETTEEEEEEEE-------------ETTEEEEEEEETTTCCCEEECCSSCEEEEEEECTT
T ss_pred             EeecCC------C-ceEEECCCCCEEEEEEEc-------------CCCCeEEEEEcCCCCCceEeecCCCccccceECCC
Confidence            444321      1 577899999877643210             01124699999988888877655555688999999


Q ss_pred             CCEEEEEEcCCC--eEEEEEeecCCCcceEEeccCCCCCCCceE--------ECCCCCEEEEEecCC
Q 026118          163 ERFLVVCESWKF--RCVKHFLKVSGRTDREIFIDNLPGGPDNVN--------LARDGSFWISIIKMD  219 (243)
Q Consensus       163 g~~l~v~~~~~~--~i~~~~~~~~~~~~~~~~~~~~~~~~~~i~--------~d~~G~lwv~~~~~~  219 (243)
                      |+.|+.++ .++  .|++++.+++.   ...+ ......+.+++        +++||.++++....+
T Consensus       206 G~~l~~~~-~~~~~~i~~~d~~~~~---~~~~-~~~~~~~~~~~~~~~~~~~~spdg~~~~~~~~~g  267 (582)
T 3o4h_A          206 MKVTAGLE-TAREARLVTVDPRDGS---VEDL-ELPSKDFSSYRPTAITWLGYLPDGRLAVVARREG  267 (582)
T ss_dssp             SCEEEEEE-CSSCEEEEEECTTTCC---EEEC-CCSCSHHHHHCCSEEEEEEECTTSCEEEEEEETT
T ss_pred             CCEEEEcc-CCCeeEEEEEcCCCCc---EEEc-cCCCcChhhhhhccccceeEcCCCcEEEEEEcCC
Confidence            99888554 344  78888876532   2222 22222234455        899998887766554

>3fm0_A Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD repeat, biosynthetic prote structural genomics, structural genomics consortium; 1.70A {Homo sapiens}

Probab=98.81  E-value=2.3e-06  Score=69.48  Aligned_cols=185  Identities=10%  Similarity=0.043  Sum_probs=107.4

Q ss_pred             cccEEEcCCCcEE-EEeCCCcEEEEcc-CCcee-E--ecccCCccccceEEccCCCEEEEEeCCCcEEEEe-cCC-cEEE
Q 026118           12 PEDVSVDGNGVLY-TATGDGWIKRMHP-NGTWE-D--WHQVGSQSLLGLTTTKENNVIIVCDSQQGLLKVS-EEG-VTVL   84 (243)
Q Consensus        12 p~~i~~d~~g~l~-~~~~~~~i~~~~~-~g~~~-~--~~~~~~~~~~~i~~~~~g~l~~v~~~~~gl~~~~-~~g-~~~~   84 (243)
                      -..+++.++|.+. .+..++.|..++. .+... .  .......+...++++++|++|..+..+..+..++ ..+ ...+
T Consensus        19 v~~l~~sp~g~~las~~~D~~i~iw~~~~~~~~~~~~~~~~h~~~v~~~~~sp~g~~l~s~s~D~~v~iw~~~~~~~~~~   98 (345)
T 3fm0_A           19 CWFLAWNPAGTLLASCGGDRRIRIWGTEGDSWICKSVLSEGHQRTVRKVAWSPCGNYLASASFDATTCIWKKNQDDFECV   98 (345)
T ss_dssp             EEEEEECTTSSCEEEEETTSCEEEEEEETTEEEEEEEECSSCSSCEEEEEECTTSSEEEEEETTSCEEEEEECCC-EEEE
T ss_pred             EEEEEECCCCCEEEEEcCCCeEEEEEcCCCcceeeeeeccccCCcEEEEEECCCCCEEEEEECCCcEEEEEccCCCeEEE
Confidence            3468999999655 5558888998883 44322 1  1111122333899999999866666555566666 444 3322


Q ss_pred             EeccCCCcccCCccEEEcCCCcEEEEeCCCCCCcccccccccccCCCceEEEEeCCCCe-eE---EeeccccccceEEEc
Q 026118           85 VSQFNGSQLRFANDVIEASDGSLYFTVSSTKFTPAEYYLDLVSGEPHGVLLKYDPSTNQ-TS---LVLDGLYFANGVALS  160 (243)
Q Consensus        85 ~~~~~~~~~~~~~~l~~d~~G~l~v~~~~~~~~~~~~~~~~~~~~~~g~v~~~~~~~~~-~~---~~~~~~~~~~gi~~~  160 (243)
                      .. ..+. ...+.++++.|+|+++++.+.                 .+.|..+|..++. ..   .+.........++++
T Consensus        99 ~~-~~~h-~~~v~~v~~sp~~~~l~s~s~-----------------D~~v~iwd~~~~~~~~~~~~~~~h~~~v~~~~~~  159 (345)
T 3fm0_A           99 TT-LEGH-ENEVKSVAWAPSGNLLATCSR-----------------DKSVWVWEVDEEDEYECVSVLNSHTQDVKHVVWH  159 (345)
T ss_dssp             EE-ECCC-SSCEEEEEECTTSSEEEEEET-----------------TSCEEEEEECTTSCEEEEEEECCCCSCEEEEEEC
T ss_pred             EE-ccCC-CCCceEEEEeCCCCEEEEEEC-----------------CCeEEEEECCCCCCeEEEEEecCcCCCeEEEEEC
Confidence            22 2221 235678999999998776432                 2455555554332 11   122223445789999


Q ss_pred             CCCCEEEEEEcCCCeEEEEEeecCCCcceEEeccCCCCCCCceEECCCCCEEEEEec
Q 026118          161 EDERFLVVCESWKFRCVKHFLKVSGRTDREIFIDNLPGGPDNVNLARDGSFWISIIK  217 (243)
Q Consensus       161 ~dg~~l~v~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~i~~d~~G~lwv~~~~  217 (243)
                      |++++|..+ ..++.|..|+...........+. .-......++++++|++.++...
T Consensus       160 p~~~~l~s~-s~d~~i~~w~~~~~~~~~~~~~~-~h~~~v~~l~~sp~g~~l~s~s~  214 (345)
T 3fm0_A          160 PSQELLASA-SYDDTVKLYREEEDDWVCCATLE-GHESTVWSLAFDPSGQRLASCSD  214 (345)
T ss_dssp             SSSSCEEEE-ETTSCEEEEEEETTEEEEEEEEC-CCSSCEEEEEECTTSSEEEEEET
T ss_pred             CCCCEEEEE-eCCCcEEEEEecCCCEEEEEEec-CCCCceEEEEECCCCCEEEEEeC
Confidence            999955555 56778888887653211111221 22234556888888885554433

>1fwx_A Nitrous oxide reductase; beta-propeller domain, cupredoxin domain, CUZ site, CUA site oxidoreductase; 1.60A {Paracoccus denitrificans} SCOP: b.6.1.4 b.69.3.1 PDB: 2iwk_A 2iwf_A

Probab=98.81  E-value=6.8e-07  Score=77.11  Aligned_cols=191  Identities=8%  Similarity=-0.049  Sum_probs=113.8

Q ss_pred             CCcccEEE-c-CCC-cEEEEe------------------CCCcEEEEcc-CCceeEecccCCccccceEEccCCCEEEEE
Q 026118           10 NHPEDVSV-D-GNG-VLYTAT------------------GDGWIKRMHP-NGTWEDWHQVGSQSLLGLTTTKENNVIIVC   67 (243)
Q Consensus        10 ~~p~~i~~-d-~~g-~l~~~~------------------~~~~i~~~~~-~g~~~~~~~~~~~~~~~i~~~~~g~l~~v~   67 (243)
                      ..|+++++ . +++ .+|++.                  .++.+..+|. ..++..-....++|. +++++++|+++|++
T Consensus       134 ~~phg~~~~~~p~~~~v~~~~~~~~p~~~dg~~l~~~~~~~~~vtvID~~t~~v~~qI~Vgg~pd-~~~~spdGk~~~vt  212 (595)
T 1fwx_A          134 KGIHGLRPQKWPRSNYVFCNGEDETPLVNDGTNMEDVANYVNVFTAVDADKWEVAWQVLVSGNLD-NCDADYEGKWAFST  212 (595)
T ss_dssp             CSEEEEEECCSSBCSEEEEEECSCEESSCSSSSTTCGGGEEEEEEEEETTTTEEEEEEEESSCCC-CEEECSSSSEEEEE
T ss_pred             CCCcceeeeecCCCcEEEEecccccccCCCCcccccccccCceEEEEECCCCeEEEEEEeCCCcc-ceEECCCCCEEEEE
Confidence            57999998 4 665 688883                  1235677774 334333333345788 99999999998888


Q ss_pred             eCCC---------------cEEEEe-c-------CC-c------EEEEecc-CCC-------cccCCccEEEcCCCc-EE
Q 026118           68 DSQQ---------------GLLKVS-E-------EG-V------TVLVSQF-NGS-------QLRFANDVIEASDGS-LY  108 (243)
Q Consensus        68 ~~~~---------------gl~~~~-~-------~g-~------~~~~~~~-~~~-------~~~~~~~l~~d~~G~-l~  108 (243)
                      ....               .+..++ +       +| .      ..+.... .+.       -...|.++.++|||+ +|
T Consensus       213 ~~~se~~~~i~~~~~~~~d~v~V~~~~~~~~~v~~Gk~~~i~~V~VID~~~~~~~~~~~~Ipvg~~PhGv~~sPDGk~v~  292 (595)
T 1fwx_A          213 SYNSEKGMTLPEMTAAEMDHIVVFNIAEIEKAIAAGDYQELNGVKVVDGRKEASSLFTRYIPIANNPHGCNMAPDKKHLC  292 (595)
T ss_dssp             ESCTTCCSSHHHHTCCSEEEEEEEEHHHHHHHHHHTCSEEETTEEEEECSGGGCCSSEEEEEEESSCCCEEECTTSSEEE
T ss_pred             ecCcccCcchhhccccccceEEEeeccceeEeccCCCeeEECcEEEEeCcccCCceeEEEEecCCCceEEEEcCCCCEEE
Confidence            7542               133333 1       11 1      1111100 000       013688999999998 55


Q ss_pred             EEeCCCCCCcccccccccccCCCceEEEEeCCCCe------------eEEeeccccccceEEEcCCCCEEEEEEcCCCeE
Q 026118          109 FTVSSTKFTPAEYYLDLVSGEPHGVLLKYDPSTNQ------------TSLVLDGLYFANGVALSEDERFLVVCESWKFRC  176 (243)
Q Consensus       109 v~~~~~~~~~~~~~~~~~~~~~~g~v~~~~~~~~~------------~~~~~~~~~~~~gi~~~~dg~~l~v~~~~~~~i  176 (243)
                      +++.                 ....|..||.++.+            +.........|..++|+++| .+|++...+++|
T Consensus       293 V~~~-----------------~s~~VsVid~~~~~~~~~~~l~~~~~v~~~v~vG~gP~h~aF~~dG-~aY~t~~ldsqV  354 (595)
T 1fwx_A          293 VAGK-----------------LSPTVTVLDVTRFDAVFYENADPRSAVVAEPELGLGPLHTAFDGRG-NAYTSLFLDSQV  354 (595)
T ss_dssp             EECT-----------------TSSBEEEEEGGGHHHHHHSCCCGGGGEEECCBCCSCEEEEEECTTS-EEEEEETTTTEE
T ss_pred             EeCC-----------------CCCeEEEEECcccccccccccCcccceEEEcCCCCCcceEEECCCC-eEEEEEecCCcE
Confidence            5532                 34578888876431            11112233568899999999 699999999999


Q ss_pred             EEEEeecC-------C-CcceEEeccC-CCC---CCCceEECCCCCEEEEEecCC
Q 026118          177 VKHFLKVS-------G-RTDREIFIDN-LPG---GPDNVNLARDGSFWISIIKMD  219 (243)
Q Consensus       177 ~~~~~~~~-------~-~~~~~~~~~~-~~~---~~~~i~~d~~G~lwv~~~~~~  219 (243)
                      .+|+++..       . ......+.-. .++   ...++++++||+..++.+...
T Consensus       355 ~kwdi~~a~~~~~g~~~~~vi~kidV~yqpGh~~~~~g~t~~~DGk~l~~~Nk~s  409 (595)
T 1fwx_A          355 VKWNIEDAIRAYAGEKVDPIKDKLDVHYQPGHLKTVMGETLDATNDWLVCLSKFS  409 (595)
T ss_dssp             EEEEHHHHHHHHHTCSCCCEEEEEECSSCEEEEEETTTTSTTCCSSEEEEEESCC
T ss_pred             EEEEhhHhhhhhcccccceeEEEeecccccccceeccceEeCCCCCEEEEcCCCC
Confidence            99998751       0 1111111111 111   235677889999666666654

>2aq5_A Coronin-1A; WD40 repeat, 7-bladed beta-propeller, structural protein; HET: CME; 1.75A {Mus musculus} PDB: 2b4e_A

Probab=98.80  E-value=3e-06  Score=70.05  Aligned_cols=182  Identities=12%  Similarity=0.026  Sum_probs=111.4

Q ss_pred             CcccEEEcCCC-c-EEEEeCCCcEEEEc-cCCcee-Ee--cccCCccccceEEccCCCEEEEEeCCCcEEEEe-cCC-cE
Q 026118           11 HPEDVSVDGNG-V-LYTATGDGWIKRMH-PNGTWE-DW--HQVGSQSLLGLTTTKENNVIIVCDSQQGLLKVS-EEG-VT   82 (243)
Q Consensus        11 ~p~~i~~d~~g-~-l~~~~~~~~i~~~~-~~g~~~-~~--~~~~~~~~~~i~~~~~g~l~~v~~~~~gl~~~~-~~g-~~   82 (243)
                      ...++++.+++ . |+.+..++.|..++ ..++.. .+  ........ +++++++|++++++..++.|..++ .++ ..
T Consensus       133 ~v~~~~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~-~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~  211 (402)
T 2aq5_A          133 RVGIVAWHPTAQNVLLSAGCDNVILVWDVGTGAAVLTLGPDVHPDTIY-SVDWSRDGALICTSCRDKRVRVIEPRKGTVV  211 (402)
T ss_dssp             CEEEEEECSSBTTEEEEEETTSCEEEEETTTTEEEEEECTTTCCSCEE-EEEECTTSSCEEEEETTSEEEEEETTTTEEE
T ss_pred             eEEEEEECcCCCCEEEEEcCCCEEEEEECCCCCccEEEecCCCCCceE-EEEECCCCCEEEEEecCCcEEEEeCCCCcee
Confidence            45678888887 4 45556888999999 445433 23  11223334 899999998856666555677888 566 22


Q ss_pred             EEEeccCCCcccCCccEEEcCCCcEEEEeCCCCCCcccccccccccCCCceEEEEeCCCCee--EEe-eccccccceEEE
Q 026118           83 VLVSQFNGSQLRFANDVIEASDGSLYFTVSSTKFTPAEYYLDLVSGEPHGVLLKYDPSTNQT--SLV-LDGLYFANGVAL  159 (243)
Q Consensus        83 ~~~~~~~~~~~~~~~~l~~d~~G~l~v~~~~~~~~~~~~~~~~~~~~~~g~v~~~~~~~~~~--~~~-~~~~~~~~gi~~  159 (243)
                      ....  .......+..+++.++|+++++...              ....+.|..+|..+++.  ... .........+++
T Consensus       212 ~~~~--~~~~~~~~~~~~~~~~~~~l~~g~~--------------~~~d~~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~  275 (402)
T 2aq5_A          212 AEKD--RPHEGTRPVHAVFVSEGKILTTGFS--------------RMSERQVALWDTKHLEEPLSLQELDTSSGVLLPFF  275 (402)
T ss_dssp             EEEE--CSSCSSSCCEEEECSTTEEEEEEEC--------------TTCCEEEEEEETTBCSSCSEEEECCCCSSCEEEEE
T ss_pred             eeec--cCCCCCcceEEEEcCCCcEEEEecc--------------CCCCceEEEEcCccccCCceEEeccCCCceeEEEE
Confidence            2110  1111123567889999987776310              01246788888876442  111 223345678999


Q ss_pred             cCCCCEEEEEEcCCCeEEEEEeecCC--CcceEEeccCCCCCCCceEECCCCCE
Q 026118          160 SEDERFLVVCESWKFRCVKHFLKVSG--RTDREIFIDNLPGGPDNVNLARDGSF  211 (243)
Q Consensus       160 ~~dg~~l~v~~~~~~~i~~~~~~~~~--~~~~~~~~~~~~~~~~~i~~d~~G~l  211 (243)
                      +++++.|+++...++.|..|+.....  +.....+.  ......++++.++|.+
T Consensus       276 s~~~~~l~~~g~~dg~i~i~d~~~~~~~~~~l~~~~--~~~~v~~~~~sp~~~~  327 (402)
T 2aq5_A          276 DPDTNIVYLCGKGDSSIRYFEITSEAPFLHYLSMFS--SKESQRGMGYMPKRGL  327 (402)
T ss_dssp             ETTTTEEEEEETTCSCEEEEEECSSTTCEEEEEEEC--CSSCCSEEEECCGGGS
T ss_pred             cCCCCEEEEEEcCCCeEEEEEecCCCcceEeecccc--cCCcccceEEeccccc
Confidence            99999888887778899999987643  22222221  1234566777766643

>3q6k_A 43.2 kDa salivary protein; beta propeller, binding protein, serotonin, salivary gland, binding, ligand binging protein; HET: CIT SRO; 2.52A {Lutzomyia longipalpis} PDB: 3q6p_A* 3q6t_A*

Probab=98.79  E-value=3.7e-06  Score=69.01  Aligned_cols=191  Identities=7%  Similarity=0.039  Sum_probs=116.9

Q ss_pred             cCCcccEEEcCCCcEEEEeCC----------------CcEEEEc-cCC--c-eeEecccC------CccccceEEc-c--
Q 026118            9 VNHPEDVSVDGNGVLYTATGD----------------GWIKRMH-PNG--T-WEDWHQVG------SQSLLGLTTT-K--   59 (243)
Q Consensus         9 ~~~p~~i~~d~~g~l~~~~~~----------------~~i~~~~-~~g--~-~~~~~~~~------~~~~~~i~~~-~--   59 (243)
                      +.....+.+|+.|+||+-+..                -+|..+| .++  + ++++..+.      .... .|++| .  
T Consensus        86 lvsV~~v~iD~~~rLWVLDtG~~~~~~~~~~~~~~~~pkLv~~DL~t~~~~li~~y~~p~~~~~~~S~l~-di~VD~~~~  164 (381)
T 3q6k_A           86 LTSIYQPVIDDCRRLWVVDIGSVEYRSRGAKDYPSHRPAIVAYDLKQPNYPEVVRYYFPTRLVEKPTYFG-GFAVDVANP  164 (381)
T ss_dssp             SSCEEEEEECTTCEEEEEECSSCSSCSTTGGGSCCCCCEEEEEESSSTTCCEEEEEECCGGGCCCGGGEE-EEEEEESCT
T ss_pred             eEEeeEEEEcCCCcEEEEeCCCcCcCCCccccCCCCCceEEEEECCCCCceeEEEEECCHHhcccCCccc-eEEEecccC
Confidence            566778999999999987621                1478888 344  4 44443321      1123 67888 2  


Q ss_pred             C----CCEEEEEeCC-CcEEEEe-cCC--cEEEEec--cC--------CCc---ccCCccEEEcCC----C-cEEEEeCC
Q 026118           60 E----NNVIIVCDSQ-QGLLKVS-EEG--VTVLVSQ--FN--------GSQ---LRFANDVIEASD----G-SLYFTVSS  113 (243)
Q Consensus        60 ~----g~l~~v~~~~-~gl~~~~-~~g--~~~~~~~--~~--------~~~---~~~~~~l~~d~~----G-~l~v~~~~  113 (243)
                      +    +.++||++.. .||+.+| .++  .+.....  ++        +..   ...+.+|+.+|+    + .||+.-..
T Consensus       165 ~~~c~~~~aYItD~~~~gLIVydl~~~~swRv~~~~~~pd~~~~~~i~G~~~~~~~Gi~gIaLsp~~~~~~~~LYf~pls  244 (381)
T 3q6k_A          165 KGDCSETFVYITNFLRGALFIYDHKKQDSWNVTHPTFKAERPTKFDYGGKEYEFKAGIFGITLGDRDSEGNRPAYYLAGS  244 (381)
T ss_dssp             TTTSCSEEEEEEETTTTEEEEEETTTTEEEEEECGGGSCCSCEEEEETTEEEEECCCEEEEEECCCCTTSCCEEEEEESS
T ss_pred             CCCCCccEEEEEcCCCCcEEEEECCCCcEEEEccCCCccccCcceEECCEEeEeccCceEEEecCCcCCCCeEEEEEECC
Confidence            2    3455999964 5899999 766  4433211  11        111   136678888876    3 48887422


Q ss_pred             CCCCcccccccccccCCCceEEEEeCC-------CCeeEEeeccccccc--eEEEc-CCCCEEEEEEcCCCeEEEEEeec
Q 026118          114 TKFTPAEYYLDLVSGEPHGVLLKYDPS-------TNQTSLVLDGLYFAN--GVALS-EDERFLVVCESWKFRCVKHFLKV  183 (243)
Q Consensus       114 ~~~~~~~~~~~~~~~~~~g~v~~~~~~-------~~~~~~~~~~~~~~~--gi~~~-~dg~~l~v~~~~~~~i~~~~~~~  183 (243)
                                       +..+|++..+       ...++.+-.......  ++++| .+|. ||++....+.|.+++.++
T Consensus       245 -----------------s~~ly~V~T~~L~~~~~~~~v~~~G~kg~~s~~~~~~~D~~~G~-ly~~~~~~~aI~~w~~~~  306 (381)
T 3q6k_A          245 -----------------AIKVYSVNTKELKQKGGKLNPELLGNRGKYNDAIALAYDPKTKV-IFFAEANTKQVSCWNTQK  306 (381)
T ss_dssp             -----------------CSEEEEEEHHHHSSTTCCCCCEEEEECCTTCCEEEEEECTTTCE-EEEEESSSSEEEEEETTS
T ss_pred             -----------------CCcEEEEEHHHhhCcchhhceEEeeecCCCCCcceEEEeCCCCe-EEEEeccCCeEEEEeCCC
Confidence                             2357776421       122333222211223  56776 5676 999999999999999765


Q ss_pred             -C-CCcceEEeccC-CCCCCCceEECCCCCEEEEEecC
Q 026118          184 -S-GRTDREIFIDN-LPGGPDNVNLARDGSFWISIIKM  218 (243)
Q Consensus       184 -~-~~~~~~~~~~~-~~~~~~~i~~d~~G~lwv~~~~~  218 (243)
                       . ...+.+++... .--+|++|.+|.+|.||+-.++-
T Consensus       307 ~~~~~~n~~~l~~d~~l~~pd~~~i~~~g~Lwv~sn~l  344 (381)
T 3q6k_A          307 MPLRMKNTDVVYTSSRFVFGTDISVDSKGGLWFMSNGF  344 (381)
T ss_dssp             CSBCGGGEEEEEECTTCCSEEEEEECTTSCEEEEECSC
T ss_pred             CccccCceEEEEECCCccccCeEEECCCCeEEEEECcc
Confidence             2 12444555432 22379999999999999988764

>1k8k_C P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta-propeller, structural protein; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1tyq_C* 1u2v_C* 2p9i_C* 2p9k_C* 2p9l_C 2p9n_C* 2p9p_C* 2p9s_C* 2p9u_C* 3rse_C 3dxm_C* 3dxk_C

Probab=98.78  E-value=1.7e-06  Score=70.21  Aligned_cols=186  Identities=8%  Similarity=-0.065  Sum_probs=110.4

Q ss_pred             CcccEEEcCCCc-EEEEeCCCcEEEEc-cCCceeEe---cccCCccccceEEccCCCEEEEEeCCCcEEEEe-cCC-cEE
Q 026118           11 HPEDVSVDGNGV-LYTATGDGWIKRMH-PNGTWEDW---HQVGSQSLLGLTTTKENNVIIVCDSQQGLLKVS-EEG-VTV   83 (243)
Q Consensus        11 ~p~~i~~d~~g~-l~~~~~~~~i~~~~-~~g~~~~~---~~~~~~~~~~i~~~~~g~l~~v~~~~~gl~~~~-~~g-~~~   83 (243)
                      ...++++.+++. |+++..++.|..++ ..++....   ........ .+++++++++++++...+.+..++ ..+ ...
T Consensus        54 ~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~v~-~~~~~~~~~~l~~~~~d~~v~i~d~~~~~~~~  132 (372)
T 1k8k_C           54 QVTGVDWAPDSNRIVTCGTDRNAYVWTLKGRTWKPTLVILRINRAAR-CVRWAPNEKKFAVGSGSRVISICYFEQENDWW  132 (372)
T ss_dssp             CEEEEEEETTTTEEEEEETTSCEEEEEEETTEEEEEEECCCCSSCEE-EEEECTTSSEEEEEETTSSEEEEEEETTTTEE
T ss_pred             cccEEEEeCCCCEEEEEcCCCeEEEEECCCCeeeeeEEeecCCCcee-EEEECCCCCEEEEEeCCCEEEEEEecCCCcce
Confidence            456788898886 45556788899888 45542221   11122334 889999999867776555677766 443 211


Q ss_pred             EEeccCCCcccCCccEEEcCCCcEEEEeCCCCCCcccccccccccCCCceEEEEeC------------------CCCeeE
Q 026118           84 LVSQFNGSQLRFANDVIEASDGSLYFTVSSTKFTPAEYYLDLVSGEPHGVLLKYDP------------------STNQTS  145 (243)
Q Consensus        84 ~~~~~~~~~~~~~~~l~~d~~G~l~v~~~~~~~~~~~~~~~~~~~~~~g~v~~~~~------------------~~~~~~  145 (243)
                      ............+.++++.++++++++.+                 ..+.|..+|.                  ..++..
T Consensus       133 ~~~~~~~~~~~~i~~~~~~~~~~~l~~~~-----------------~dg~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~  195 (372)
T 1k8k_C          133 VCKHIKKPIRSTVLSLDWHPNSVLLAAGS-----------------CDFKCRIFSAYIKEVEERPAPTPWGSKMPFGELM  195 (372)
T ss_dssp             EEEEECTTCCSCEEEEEECTTSSEEEEEE-----------------TTSCEEEEECCCTTTSCCCCCBTTBSCCCTTCEE
T ss_pred             eeeeeecccCCCeeEEEEcCCCCEEEEEc-----------------CCCCEEEEEcccccccccccccccccccchhhhe
Confidence            11111111234567889999998776632                 2346767773                  223333


Q ss_pred             Ee-eccccccceEEEcCCCCEEEEEEcCCCeEEEEEeecCCCcceEEeccCCCCCCCceEECCCCCEEEEEecC
Q 026118          146 LV-LDGLYFANGVALSEDERFLVVCESWKFRCVKHFLKVSGRTDREIFIDNLPGGPDNVNLARDGSFWISIIKM  218 (243)
Q Consensus       146 ~~-~~~~~~~~gi~~~~dg~~l~v~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~i~~d~~G~lwv~~~~~  218 (243)
                      .. .........+++++++++|+++ ..++.|..|+.....  ....+. ........++++++|++.++...+
T Consensus       196 ~~~~~~~~~v~~~~~~~~~~~l~~~-~~d~~i~i~d~~~~~--~~~~~~-~~~~~v~~~~~~~~~~~l~~~~d~  265 (372)
T 1k8k_C          196 FESSSSCGWVHGVCFSANGSRVAWV-SHDSTVCLADADKKM--AVATLA-SETLPLLAVTFITESSLVAAGHDC  265 (372)
T ss_dssp             EECCCCSSCEEEEEECSSSSEEEEE-ETTTEEEEEEGGGTT--EEEEEE-CSSCCEEEEEEEETTEEEEEETTS
T ss_pred             EecCCCCCeEEEEEECCCCCEEEEE-eCCCEEEEEECCCCc--eeEEEc-cCCCCeEEEEEecCCCEEEEEeCC
Confidence            22 2333456789999999966665 467889999986532  122222 122234567888888766655333

>4e54_B DNA damage-binding protein 2; beta barrel, double helix, DDB1:WD40 beta-barrel fold, DNA D DNA repair, HOST-virus interactions; HET: DNA 3DR; 2.85A {Homo sapiens} PDB: 3ei4_B*

Probab=98.77  E-value=1.3e-06  Score=73.20  Aligned_cols=185  Identities=9%  Similarity=-0.017  Sum_probs=107.9

Q ss_pred             cccEEEcC-CCc-EEEEeCCCcEEEEcc-CCceeE-ecc-cCCccccceEEcc-CCCEEEEEeCCCcEEEEe-cCC-cEE
Q 026118           12 PEDVSVDG-NGV-LYTATGDGWIKRMHP-NGTWED-WHQ-VGSQSLLGLTTTK-ENNVIIVCDSQQGLLKVS-EEG-VTV   83 (243)
Q Consensus        12 p~~i~~d~-~g~-l~~~~~~~~i~~~~~-~g~~~~-~~~-~~~~~~~~i~~~~-~g~l~~v~~~~~gl~~~~-~~g-~~~   83 (243)
                      -.+|++.| ++. |.+|..+|.|..++. .+.... ... ....+..+|+++| ++++|+.+..++-|..+| ..+ ...
T Consensus       122 V~~l~~~P~~~~~lasGs~dg~i~lWd~~~~~~~~~~~~~gH~~~V~~l~f~p~~~~~l~s~s~D~~v~iwd~~~~~~~~  201 (435)
T 4e54_B          122 ATSLAWHPTHPSTVAVGSKGGDIMLWNFGIKDKPTFIKGIGAGGSITGLKFNPLNTNQFYASSMEGTTRLQDFKGNILRV  201 (435)
T ss_dssp             EEEEEECSSCTTCEEEEETTSCEEEECSSCCSCCEEECCCSSSCCCCEEEECSSCTTEEEEECSSSCEEEEETTSCEEEE
T ss_pred             EEEEEEeCCCCCEEEEEeCCCEEEEEECCCCCceeEEEccCCCCCEEEEEEeCCCCCEEEEEeCCCEEEEeeccCCceeE
Confidence            35688887 454 556778999999983 333222 211 1122333899996 677746665544566777 555 443


Q ss_pred             EEeccCCCcccCCccEEEcCCCcEEEEeCCCCCCcccccccccccCCCceEEEEeCCCCeeEEeeccccccceEEEcCCC
Q 026118           84 LVSQFNGSQLRFANDVIEASDGSLYFTVSSTKFTPAEYYLDLVSGEPHGVLLKYDPSTNQTSLVLDGLYFANGVALSEDE  163 (243)
Q Consensus        84 ~~~~~~~~~~~~~~~l~~d~~G~l~v~~~~~~~~~~~~~~~~~~~~~~g~v~~~~~~~~~~~~~~~~~~~~~gi~~~~dg  163 (243)
                      +... . .....+.+++++++|.++++..                 ..+.|..+|.++..+..+.........++|+|++
T Consensus       202 ~~~~-~-~~~~~~~~~~~~~~~~~l~~g~-----------------~dg~i~~wd~~~~~~~~~~~h~~~v~~v~~~p~~  262 (435)
T 4e54_B          202 FASS-D-TINIWFCSLDVSASSRMVVTGD-----------------NVGNVILLNMDGKELWNLRMHKKKVTHVALNPCC  262 (435)
T ss_dssp             EECC-S-SCSCCCCCEEEETTTTEEEEEC-----------------SSSBEEEEESSSCBCCCSBCCSSCEEEEEECTTC
T ss_pred             Eecc-C-CCCccEEEEEECCCCCEEEEEe-----------------CCCcEeeeccCcceeEEEecccceEEeeeecCCC
Confidence            3321 1 1123456788999998777632                 2457888888755444433334456789999998


Q ss_pred             CEEEEEEcCCCeEEEEEeecCCCcceEEeccCCCCCCCceEECCCCCEEEEE
Q 026118          164 RFLVVCESWKFRCVKHFLKVSGRTDREIFIDNLPGGPDNVNLARDGSFWISI  215 (243)
Q Consensus       164 ~~l~v~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~i~~d~~G~lwv~~  215 (243)
                      +.++++...++.|..||+..............-......++++++|+..++.
T Consensus       263 ~~~~~s~s~d~~v~iwd~~~~~~~~~~~~~~~h~~~v~~~~~spdg~~l~s~  314 (435)
T 4e54_B          263 DWFLATASVDQTVKIWDLRQVRGKASFLYSLPHRHPVNAACFSPDGARLLTT  314 (435)
T ss_dssp             SSEEEEEETTSBCCEEETTTCCSSSCCSBCCBCSSCEEECCBCTTSSEEEEE
T ss_pred             ceEEEEecCcceeeEEecccccccceEEEeeeccccccceeECCCCCeeEEE
Confidence            8677666667888888876422111100000111223456777787754443

>1got_B GT-beta; complex (GTP-binding/transducer), G protein, heterotrimer signal transduction; HET: GDP; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1b9y_A 1b9x_A* 2trc_B 1tbg_A 1gg2_B* 1omw_B 1gp2_B 1xhm_A 2qns_A 3ah8_B* 3cik_B 3kj5_A 3krw_B* 3krx_B* 3psc_B 3pvu_B* 3pvw_B* 1a0r_B* 2bcj_B* 3sn6_B*

Probab=98.75  E-value=5.1e-06  Score=67.22  Aligned_cols=183  Identities=11%  Similarity=0.025  Sum_probs=110.7

Q ss_pred             CCcccEEEcCCCcEE-EEeCCCcEEEEc-cCCce-eEecccCCccccceEEccCCCEEEEEeCCCcEEEEe-cCC---cE
Q 026118           10 NHPEDVSVDGNGVLY-TATGDGWIKRMH-PNGTW-EDWHQVGSQSLLGLTTTKENNVIIVCDSQQGLLKVS-EEG---VT   82 (243)
Q Consensus        10 ~~p~~i~~d~~g~l~-~~~~~~~i~~~~-~~g~~-~~~~~~~~~~~~~i~~~~~g~l~~v~~~~~gl~~~~-~~g---~~   82 (243)
                      ..-.++++.++|.+. .+..++.|..++ .+++. ..+........ .++++++|+++..+..++.+..++ .++   .+
T Consensus        56 ~~v~~~~~s~d~~~l~s~s~Dg~v~iWd~~~~~~~~~~~~~~~~v~-~~~~s~~~~~l~s~~~d~~v~iw~~~~~~~~~~  134 (340)
T 1got_B           56 AKIYAMHWGTDSRLLLSASQDGKLIIWDSYTTNKVHAIPLRSSWVM-TCAYAPSGNYVACGGLDNICSIYNLKTREGNVR  134 (340)
T ss_dssp             SCEEEEEECTTSSEEEEEETTTEEEEEETTTCCEEEEEECSSSCEE-EEEECTTSSEEEEEETTCEEEEEETTTCSBSCE
T ss_pred             CceEEEEECCCCCEEEEEeCCCcEEEEECCCCCcceEeecCCccEE-EEEECCCCCEEEEEeCCCeEEEEECccCCCcce
Confidence            344568888888644 556889999998 34443 23322222334 789999999856666544566666 332   22


Q ss_pred             EEEeccCCCcccCCccEEEcCCCcEEEEeCCCCCCcccccccccccCCCceEEEEeCCCCeeEEeec-cccccceEEEcC
Q 026118           83 VLVSQFNGSQLRFANDVIEASDGSLYFTVSSTKFTPAEYYLDLVSGEPHGVLLKYDPSTNQTSLVLD-GLYFANGVALSE  161 (243)
Q Consensus        83 ~~~~~~~~~~~~~~~~l~~d~~G~l~v~~~~~~~~~~~~~~~~~~~~~~g~v~~~~~~~~~~~~~~~-~~~~~~gi~~~~  161 (243)
                      .... ..+. ...+.++.+.+++.+..+.                  ..+.|..+|..+++...... .......++++|
T Consensus       135 ~~~~-~~~h-~~~v~~~~~~~~~~l~s~s------------------~d~~i~~wd~~~~~~~~~~~~h~~~v~~~~~~~  194 (340)
T 1got_B          135 VSRE-LAGH-TGYLSCCRFLDDNQIVTSS------------------GDTTCALWDIETGQQTTTFTGHTGDVMSLSLAP  194 (340)
T ss_dssp             EEEE-EECC-SSCEEEEEEEETTEEEEEE------------------TTSCEEEEETTTTEEEEEECCCSSCEEEEEECT
T ss_pred             eEEE-ecCC-CccEEEEEECCCCcEEEEE------------------CCCcEEEEECCCCcEEEEEcCCCCceEEEEECC
Confidence            2221 1111 1345567777777765553                  23568888888776554433 334567899999


Q ss_pred             CCCEEEEEEcCCCeEEEEEeecCCCcceEEeccCCCCCCCceEECCCCCEEEEEec
Q 026118          162 DERFLVVCESWKFRCVKHFLKVSGRTDREIFIDNLPGGPDNVNLARDGSFWISIIK  217 (243)
Q Consensus       162 dg~~l~v~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~i~~d~~G~lwv~~~~  217 (243)
                      +++ ++++...++.|..+|.....  ....+. ........+++.++|++.++...
T Consensus       195 ~~~-~l~sg~~d~~v~~wd~~~~~--~~~~~~-~h~~~v~~v~~~p~~~~l~s~s~  246 (340)
T 1got_B          195 DTR-LFVSGACDASAKLWDVREGM--CRQTFT-GHESDINAICFFPNGNAFATGSD  246 (340)
T ss_dssp             TSS-EEEEEETTSCEEEEETTTCS--EEEEEC-CCSSCEEEEEECTTSSEEEEEET
T ss_pred             CCC-EEEEEeCCCcEEEEECCCCe--eEEEEc-CCcCCEEEEEEcCCCCEEEEEcC
Confidence            999 55555667899999976431  122221 22234566888999886655443

>3sjl_D Methylamine dehydrogenase heavy chain; MAUG, C-heme, quinone cofactor, oxidoreductase-electron transport complex; HET: 0AF HEC MES; 1.63A {Paracoccus denitrificans} PDB: 2gc7_A* 2j55_H* 2j56_H* 2j57_G* 3l4m_D* 3l4o_D* 3orv_D* 3pxs_D* 3pxt_D* 3rlm_D* 2gc4_A* 3rn0_D* 3rn1_D* 3rmz_D* 3svw_D* 3sws_D* 3sxt_D* 3pxw_D* 3sle_D* 1mg2_A* ...

Probab=98.75  E-value=1.5e-06  Score=71.70  Aligned_cols=140  Identities=11%  Similarity=-0.018  Sum_probs=88.3

Q ss_pred             cCCC-cEEEEeC-----CCcEEEEcc-CCceeEecccCCccccceEEccCCCEEEEEeC----------CCcEEEEe-cC
Q 026118           18 DGNG-VLYTATG-----DGWIKRMHP-NGTWEDWHQVGSQSLLGLTTTKENNVIIVCDS----------QQGLLKVS-EE   79 (243)
Q Consensus        18 d~~g-~l~~~~~-----~~~i~~~~~-~g~~~~~~~~~~~~~~~i~~~~~g~l~~v~~~----------~~gl~~~~-~~   79 (243)
                      .+++ ++|+++.     .+.|+.+|. ++++.........|  ++++++||+.+|+++.          .+.|..+| .+
T Consensus        41 ~pd~~~vyV~~~~~~~~~~~V~ViD~~t~~v~~~I~vG~~P--~va~spDG~~lyVan~~~~r~~~G~~~~~VsviD~~t  118 (386)
T 3sjl_D           41 APDARRVYVNDPAHFAAVTQQFVIDGEAGRVIGMIDGGFLP--NPVVADDGSFIAHASTVFSRIARGERTDYVEVFDPVT  118 (386)
T ss_dssp             CCCTTEEEEEECGGGCSSEEEEEEETTTTEEEEEEEECSSC--EEEECTTSSCEEEEEEEEEETTEEEEEEEEEEECTTT
T ss_pred             CCCCCEEEEEcCcccCCCCEEEEEECCCCeEEEEEECCCCC--cEEECCCCCEEEEEcccccccccCCCCCEEEEEECCC
Confidence            4566 7999984     578999994 55554433333344  4999999997799973          23478888 55


Q ss_pred             C--cEEEEeccCCC---cccCCccEEEcCCCc-EEEEeCCCCCCcccccccccccCCCceEEEEeCCCCeeEEeecc---
Q 026118           80 G--VTVLVSQFNGS---QLRFANDVIEASDGS-LYFTVSSTKFTPAEYYLDLVSGEPHGVLLKYDPSTNQTSLVLDG---  150 (243)
Q Consensus        80 g--~~~~~~~~~~~---~~~~~~~l~~d~~G~-l~v~~~~~~~~~~~~~~~~~~~~~~g~v~~~~~~~~~~~~~~~~---  150 (243)
                      +  ...+.. ..+.   ....|.++++++||+ +|+++..                ..+.|..+|.+++++..-..-   
T Consensus       119 ~~v~~~I~v-~~g~r~~~g~~P~~~a~spDGk~lyVan~~----------------~~~~VsVID~~t~~vv~tI~v~g~  181 (386)
T 3sjl_D          119 LLPTADIEL-PDAPRFLVGTYPWMTSLTPDGKTLLFYQFS----------------PAPAVGVVDLEGKAFKRMLDVPDC  181 (386)
T ss_dssp             CCEEEEEEE-TTCCCCCBSCCGGGEEECTTSSEEEEEECS----------------SSCEEEEEETTTTEEEEEEECCSE
T ss_pred             CeEEEEEEC-CCccccccCCCCceEEEcCCCCEEEEEEcC----------------CCCeEEEEECCCCcEEEEEECCCc
Confidence            5  233321 1111   124688999999996 8888532                235799999998876543211   


Q ss_pred             -ccccce----EEEcCCCCEEEEEEcCCCeE
Q 026118          151 -LYFANG----VALSEDERFLVVCESWKFRC  176 (243)
Q Consensus       151 -~~~~~g----i~~~~dg~~l~v~~~~~~~i  176 (243)
                       ...|.+    +++++||+.+|+.....+.+
T Consensus       182 ~~~~P~g~~~~~~~~~DG~~~~v~~~~~g~v  212 (386)
T 3sjl_D          182 YHIFPTAPDTFFMHCRDGSLAKVAFGTEGTP  212 (386)
T ss_dssp             EEEEEEETTEEEEEETTSCEEEEECCSSSCC
T ss_pred             ceeecCCCceeEEECCCCCEEEEECCCCCeE
Confidence             112333    47778888777765443444

>1k8k_C P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta-propeller, structural protein; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1tyq_C* 1u2v_C* 2p9i_C* 2p9k_C* 2p9l_C 2p9n_C* 2p9p_C* 2p9s_C* 2p9u_C* 3rse_C 3dxm_C* 3dxk_C

Probab=98.75  E-value=6.1e-06  Score=66.91  Aligned_cols=184  Identities=10%  Similarity=0.014  Sum_probs=107.4

Q ss_pred             CcccEEEcCCCcEE-EEeCCCcEEEEc-cCCc---eeEecccCCccccceEEccCCCEEEEEeCCCcEEEEe-cCC-cEE
Q 026118           11 HPEDVSVDGNGVLY-TATGDGWIKRMH-PNGT---WEDWHQVGSQSLLGLTTTKENNVIIVCDSQQGLLKVS-EEG-VTV   83 (243)
Q Consensus        11 ~p~~i~~d~~g~l~-~~~~~~~i~~~~-~~g~---~~~~~~~~~~~~~~i~~~~~g~l~~v~~~~~gl~~~~-~~g-~~~   83 (243)
                      .-.++++.++|.+. ++..++.|..++ ..++   ...+........ ++++++++++++++...+.+..++ .++ ...
T Consensus        10 ~i~~~~~s~~~~~l~~~~~d~~v~i~~~~~~~~~~~~~~~~h~~~v~-~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~   88 (372)
T 1k8k_C           10 PISCHAWNKDRTQIAICPNNHEVHIYEKSGNKWVQVHELKEHNGQVT-GVDWAPDSNRIVTCGTDRNAYVWTLKGRTWKP   88 (372)
T ss_dssp             CCCEEEECTTSSEEEEECSSSEEEEEEEETTEEEEEEEEECCSSCEE-EEEEETTTTEEEEEETTSCEEEEEEETTEEEE
T ss_pred             CeEEEEECCCCCEEEEEeCCCEEEEEeCCCCcEEeeeeecCCCCccc-EEEEeCCCCEEEEEcCCCeEEEEECCCCeeee
Confidence            34578999988654 555888899998 3443   333322223334 899999999866666555677777 555 332


Q ss_pred             EEeccCCCcccCCccEEEcCCCcEEEEeCCCCCCcccccccccccCCCceEEEEeCCCCe----eEEeecc-ccccceEE
Q 026118           84 LVSQFNGSQLRFANDVIEASDGSLYFTVSSTKFTPAEYYLDLVSGEPHGVLLKYDPSTNQ----TSLVLDG-LYFANGVA  158 (243)
Q Consensus        84 ~~~~~~~~~~~~~~~l~~d~~G~l~v~~~~~~~~~~~~~~~~~~~~~~g~v~~~~~~~~~----~~~~~~~-~~~~~gi~  158 (243)
                      ......  ....+.+++++++|+++++...                 .+.|..++.++++    ...+... ......++
T Consensus        89 ~~~~~~--~~~~v~~~~~~~~~~~l~~~~~-----------------d~~v~i~d~~~~~~~~~~~~~~~~~~~~i~~~~  149 (372)
T 1k8k_C           89 TLVILR--INRAARCVRWAPNEKKFAVGSG-----------------SRVISICYFEQENDWWVCKHIKKPIRSTVLSLD  149 (372)
T ss_dssp             EEECCC--CSSCEEEEEECTTSSEEEEEET-----------------TSSEEEEEEETTTTEEEEEEECTTCCSCEEEEE
T ss_pred             eEEeec--CCCceeEEEECCCCCEEEEEeC-----------------CCEEEEEEecCCCcceeeeeeecccCCCeeEEE
Confidence            222111  1245678899999986665321                 2345444444333    1222222 34567899


Q ss_pred             EcCCCCEEEEEEcCCCeEEEEEeecCC---------------Ccc-eEEeccCCCCCCCceEECCCCCEEEEEe
Q 026118          159 LSEDERFLVVCESWKFRCVKHFLKVSG---------------RTD-REIFIDNLPGGPDNVNLARDGSFWISII  216 (243)
Q Consensus       159 ~~~dg~~l~v~~~~~~~i~~~~~~~~~---------------~~~-~~~~~~~~~~~~~~i~~d~~G~lwv~~~  216 (243)
                      +++++++++++ ..++.|..|+.....               ... ...+. ........++++++|++.++..
T Consensus       150 ~~~~~~~l~~~-~~dg~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~v~~~~~~~~~~~l~~~~  221 (372)
T 1k8k_C          150 WHPNSVLLAAG-SCDFKCRIFSAYIKEVEERPAPTPWGSKMPFGELMFESS-SSCGWVHGVCFSANGSRVAWVS  221 (372)
T ss_dssp             ECTTSSEEEEE-ETTSCEEEEECCCTTTSCCCCCBTTBSCCCTTCEEEECC-CCSSCEEEEEECSSSSEEEEEE
T ss_pred             EcCCCCEEEEE-cCCCCEEEEEcccccccccccccccccccchhhheEecC-CCCCeEEEEEECCCCCEEEEEe
Confidence            99999966655 456889999964211               011 11111 1223456688888887544443

>3zwl_B Eukaryotic translation initiation factor 3 subuni; 2.20A {Saccharomyces cerevisiae}

Probab=98.74  E-value=3.6e-06  Score=67.97  Aligned_cols=185  Identities=9%  Similarity=0.049  Sum_probs=108.2

Q ss_pred             CcccEEEcCCCc-EEEEeCCCcEEEEc-cCCceeE-ecccCCccccceEEccCCCEEEEEeCCCcEEEEe-cCC-cEEEE
Q 026118           11 HPEDVSVDGNGV-LYTATGDGWIKRMH-PNGTWED-WHQVGSQSLLGLTTTKENNVIIVCDSQQGLLKVS-EEG-VTVLV   85 (243)
Q Consensus        11 ~p~~i~~d~~g~-l~~~~~~~~i~~~~-~~g~~~~-~~~~~~~~~~~i~~~~~g~l~~v~~~~~gl~~~~-~~g-~~~~~   85 (243)
                      ...++++.++|. |+++..++.|..++ .+++... +........ ++++++++++++++...+.|..++ .++ .....
T Consensus        34 ~v~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~h~~~v~-~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~  112 (369)
T 3zwl_B           34 PLTQVKYNKEGDLLFSCSKDSSASVWYSLNGERLGTLDGHTGTIW-SIDVDCFTKYCVTGSADYSIKLWDVSNGQCVATW  112 (369)
T ss_dssp             CEEEEEECTTSCEEEEEESSSCEEEEETTTCCEEEEECCCSSCEE-EEEECTTSSEEEEEETTTEEEEEETTTCCEEEEE
T ss_pred             eEEEEEEcCCCCEEEEEeCCCEEEEEeCCCchhhhhhhhcCCcEE-EEEEcCCCCEEEEEeCCCeEEEEECCCCcEEEEe
Confidence            456788999886 55666888999998 4554333 322223334 899999999856666555577888 665 32222


Q ss_pred             eccCCCcccCCccEEEcCCCcEEEEeCCCCCCcccccccccccCCCceEEEEeCCCCee------------EEeecc--c
Q 026118           86 SQFNGSQLRFANDVIEASDGSLYFTVSSTKFTPAEYYLDLVSGEPHGVLLKYDPSTNQT------------SLVLDG--L  151 (243)
Q Consensus        86 ~~~~~~~~~~~~~l~~d~~G~l~v~~~~~~~~~~~~~~~~~~~~~~g~v~~~~~~~~~~------------~~~~~~--~  151 (243)
                      .     ....+.+++++++|+++++....            .....+.|..++..+...            ..+...  .
T Consensus       113 ~-----~~~~v~~~~~~~~~~~l~~~~~~------------~~~~~g~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~  175 (369)
T 3zwl_B          113 K-----SPVPVKRVEFSPCGNYFLAILDN------------VMKNPGSINIYEIERDSATHELTKVSEEPIHKIITHEGL  175 (369)
T ss_dssp             E-----CSSCEEEEEECTTSSEEEEEECC------------BTTBCCEEEEEEEEECTTTCCEEEECSSCSEEEECCTTC
T ss_pred             e-----cCCCeEEEEEccCCCEEEEecCC------------ccCCCCEEEEEEecCCccceeecccccceeeeccCCcCc
Confidence            1     12346688999999876653220            001124555555443211            111111  1


Q ss_pred             cccceEEEcCCCCEEEEEEcCCCeEEEEEeecCCCcceEEeccCCCCCCCceEECCCCCEEEEEe
Q 026118          152 YFANGVALSEDERFLVVCESWKFRCVKHFLKVSGRTDREIFIDNLPGGPDNVNLARDGSFWISII  216 (243)
Q Consensus       152 ~~~~gi~~~~dg~~l~v~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~i~~d~~G~lwv~~~  216 (243)
                      .....++++++++.++++ ..++.|..|+..... .....+. ........++++++|++.++..
T Consensus       176 ~~~~~~~~~~~~~~l~~~-~~dg~i~i~d~~~~~-~~~~~~~-~~~~~v~~~~~~~~~~~l~~~~  237 (369)
T 3zwl_B          176 DAATVAGWSTKGKYIIAG-HKDGKISKYDVSNNY-EYVDSID-LHEKSISDMQFSPDLTYFITSS  237 (369)
T ss_dssp             CCEEEEEECGGGCEEEEE-ETTSEEEEEETTTTT-EEEEEEE-CCSSCEEEEEECTTSSEEEEEE
T ss_pred             cceeEEEEcCCCCEEEEE-cCCCEEEEEECCCCc-EeEEEEe-cCCCceeEEEECCCCCEEEEec
Confidence            256789999999966666 456889999976421 1112221 2233456688888888554443

>4gqb_B Methylosome protein 50; TIM barrel, beta-propeller, methyltransferase, methylation, transferase-protein binding complex; HET: 0XU; 2.06A {Homo sapiens}

Probab=98.73  E-value=2.8e-06  Score=69.23  Aligned_cols=174  Identities=8%  Similarity=-0.001  Sum_probs=105.7

Q ss_pred             ccEEEcCCCcEEEEeCCCcEEEEc-cCCce-eEec--c-cCCccccceEEccCCCEEEEEeCCCcEEEEe-cCC-cEEEE
Q 026118           13 EDVSVDGNGVLYTATGDGWIKRMH-PNGTW-EDWH--Q-VGSQSLLGLTTTKENNVIIVCDSQQGLLKVS-EEG-VTVLV   85 (243)
Q Consensus        13 ~~i~~d~~g~l~~~~~~~~i~~~~-~~g~~-~~~~--~-~~~~~~~~i~~~~~g~l~~v~~~~~gl~~~~-~~g-~~~~~   85 (243)
                      .++++.+++.|.++..++.|..++ ..++. ....  . ....+..+++++++|++|..+..++-|..+| .++ .....
T Consensus        86 ~~~~~s~d~~l~~~s~dg~v~lWd~~~~~~~~~~~~~~~~H~~~V~~v~~spdg~~l~sgs~d~~i~iwd~~~~~~~~~~  165 (344)
T 4gqb_B           86 ADLTWVGERGILVASDSGAVELWELDENETLIVSKFCKYEHDDIVSTVSVLSSGTQAVSGSKDICIKVWDLAQQVVLSSY  165 (344)
T ss_dssp             EEEEEETTTEEEEEETTSEEEEEEECTTSSCEEEEEEEECCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEE
T ss_pred             EEEEEeCCCeEEEEECCCEEEEEeccCCCceeEeeccccCCCCCEEEEEECCCCCEEEEEeCCCeEEEEECCCCcEEEEE
Confidence            468888999888888999999998 34432 2111  1 1122333899999999856666555577788 666 22211


Q ss_pred             eccCCCcccCCccEEEcCCC-cEEEEeCCCCCCcccccccccccCCCceEEEEeCCCCeeEEeec---cccccceEEEcC
Q 026118           86 SQFNGSQLRFANDVIEASDG-SLYFTVSSTKFTPAEYYLDLVSGEPHGVLLKYDPSTNQTSLVLD---GLYFANGVALSE  161 (243)
Q Consensus        86 ~~~~~~~~~~~~~l~~d~~G-~l~v~~~~~~~~~~~~~~~~~~~~~~g~v~~~~~~~~~~~~~~~---~~~~~~gi~~~~  161 (243)
                         .+ ....+.++++.+++ +++++.+                 ..+.|..+|..+++......   .......+++++
T Consensus       166 ---~~-h~~~V~~~~~~~~~~~~l~s~s-----------------~D~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~p  224 (344)
T 4gqb_B          166 ---RA-HAAQVTCVAASPHKDSVFLSCS-----------------EDNRILLWDTRCPKPASQIGCSAPGYLPTSLAWHP  224 (344)
T ss_dssp             ---CC-CSSCEEEEEECSSCTTEEEEEE-----------------TTSCEEEEETTSSSCEEECC----CCCEEEEEECS
T ss_pred             ---cC-cCCceEEEEecCCCCCceeeec-----------------cccccccccccccceeeeeecceeeccceeeeecC
Confidence               11 12356788899887 4666532                 23567788887766543321   123457899998


Q ss_pred             CCCEEEEEEcCCCeEEEEEeecCCCcceEEeccCCCCCCCceEECCCCC
Q 026118          162 DERFLVVCESWKFRCVKHFLKVSGRTDREIFIDNLPGGPDNVNLARDGS  210 (243)
Q Consensus       162 dg~~l~v~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~i~~d~~G~  210 (243)
                      ++..++++...++.|..+|......  ...+. .-......+++.++|.
T Consensus       225 ~~~~~l~sg~~dg~v~~wd~~~~~~--~~~~~-~h~~~v~~v~fsp~g~  270 (344)
T 4gqb_B          225 QQSEVFVFGDENGTVSLVDTKSTSC--VLSSA-VHSQCVTGLVFSPHSV  270 (344)
T ss_dssp             SCTTEEEEEETTSEEEEEESCC--C--CEEEE-CCSSCEEEEEECSSSS
T ss_pred             CCCcceEEeccCCcEEEEECCCCcE--EEEEc-CCCCCEEEEEEccCCC
Confidence            6554666666778999999864322  12221 1122345577777764

>3q6k_A 43.2 kDa salivary protein; beta propeller, binding protein, serotonin, salivary gland, binding, ligand binging protein; HET: CIT SRO; 2.52A {Lutzomyia longipalpis} PDB: 3q6p_A* 3q6t_A*

Probab=98.73  E-value=7.9e-06  Score=67.09  Aligned_cols=190  Identities=10%  Similarity=0.049  Sum_probs=119.9

Q ss_pred             CcccEEEc-CCCcEEEEeC---CC---cEEEEcc---------CCce-eEeccc-----CCccccceEEccCCCEEEEEe
Q 026118           11 HPEDVSVD-GNGVLYTATG---DG---WIKRMHP---------NGTW-EDWHQV-----GSQSLLGLTTTKENNVIIVCD   68 (243)
Q Consensus        11 ~p~~i~~d-~~g~l~~~~~---~~---~i~~~~~---------~g~~-~~~~~~-----~~~~~~~i~~~~~g~l~~v~~   68 (243)
                      -|-+|++| .+|++|++..   .|   .+..++.         +++. ..++.-     .-.+. ++.+|+.|+| ||.+
T Consensus        27 ~P~gv~vd~~~gRiFvt~PR~~~gvp~TL~~v~~~~~~~~~~~~p~ll~PYP~w~~~~~lvsV~-~v~iD~~~rL-WVLD  104 (381)
T 3q6k_A           27 ISTAFAYDAEGEKLFLAVPRKLPRVPYTLAEVDTKNSLGVKGKHSPLLNKFSGHKTGKELTSIY-QPVIDDCRRL-WVVD  104 (381)
T ss_dssp             CCCEEEEETTTTEEEEECCTTSTTCSCSEEEEEHHHHTTCTTCSSCCBEECTTCSSSCSSSCEE-EEEECTTCEE-EEEE
T ss_pred             ceeeeeeecCCCcEEEEeCCCCCCCCcEEEEEeCCCCcccccCCcccccCCCCCccccceEEee-EEEEcCCCcE-EEEe
Confidence            47889996 8999999972   21   3555552         2345 555431     12234 7889999998 9998


Q ss_pred             CC---------C-------cEEEEe-c-C--C-cEEEEec-cCCCcccCCccEEEc-C-------CCcEEEEeCCCCCCc
Q 026118           69 SQ---------Q-------GLLKVS-E-E--G-VTVLVSQ-FNGSQLRFANDVIEA-S-------DGSLYFTVSSTKFTP  118 (243)
Q Consensus        69 ~~---------~-------gl~~~~-~-~--g-~~~~~~~-~~~~~~~~~~~l~~d-~-------~G~l~v~~~~~~~~~  118 (243)
                      .+         .       .|+.+| . +  . .+.+.-. ....+.+..+++++| .       ++.+|++|+.     
T Consensus       105 tG~~~~~~~~~~~~~~~~pkLv~~DL~t~~~~li~~y~~p~~~~~~~S~l~di~VD~~~~~~~c~~~~aYItD~~-----  179 (381)
T 3q6k_A          105 IGSVEYRSRGAKDYPSHRPAIVAYDLKQPNYPEVVRYYFPTRLVEKPTYFGGFAVDVANPKGDCSETFVYITNFL-----  179 (381)
T ss_dssp             CSSCSSCSTTGGGSCCCCCEEEEEESSSTTCCEEEEEECCGGGCCCGGGEEEEEEEESCTTTTSCSEEEEEEETT-----
T ss_pred             CCCcCcCCCccccCCCCCceEEEEECCCCCceeEEEEECCHHhcccCCccceEEEecccCCCCCCccEEEEEcCC-----
Confidence            54         1       378888 4 4  3 3333221 111234677889999 2       4569999864     


Q ss_pred             ccccccccccCCCceEEEEeCCCCeeEEeecc-------------------ccccceEEEcCC----CCEEEEEEcCCCe
Q 026118          119 AEYYLDLVSGEPHGVLLKYDPSTNQTSLVLDG-------------------LYFANGVALSED----ERFLVVCESWKFR  175 (243)
Q Consensus       119 ~~~~~~~~~~~~~g~v~~~~~~~~~~~~~~~~-------------------~~~~~gi~~~~d----g~~l~v~~~~~~~  175 (243)
                                  ..+|..||..+++..++...                   .....||+++|+    +++||+....+..
T Consensus       180 ------------~~gLIVydl~~~~swRv~~~~~~pd~~~~~~i~G~~~~~~~Gi~gIaLsp~~~~~~~~LYf~plss~~  247 (381)
T 3q6k_A          180 ------------RGALFIYDHKKQDSWNVTHPTFKAERPTKFDYGGKEYEFKAGIFGITLGDRDSEGNRPAYYLAGSAIK  247 (381)
T ss_dssp             ------------TTEEEEEETTTTEEEEEECGGGSCCSCEEEEETTEEEEECCCEEEEEECCCCTTSCCEEEEEESSCSE
T ss_pred             ------------CCcEEEEECCCCcEEEEccCCCccccCcceEECCEEeEeccCceEEEecCCcCCCCeEEEEEECCCCc
Confidence                        34788888888776665421                   024568999998    8899999888888


Q ss_pred             EEEEEee---cCCC-cceEEeccCC-CCCCCceEEC-CCCCEEEEEecCC
Q 026118          176 CVKHFLK---VSGR-TDREIFIDNL-PGGPDNVNLA-RDGSFWISIIKMD  219 (243)
Q Consensus       176 i~~~~~~---~~~~-~~~~~~~~~~-~~~~~~i~~d-~~G~lwv~~~~~~  219 (243)
                      ++++..+   ...+ ...+.+.... .....++++| ++|+||++..+..
T Consensus       248 ly~V~T~~L~~~~~~~~v~~~G~kg~~s~~~~~~~D~~~G~ly~~~~~~~  297 (381)
T 3q6k_A          248 VYSVNTKELKQKGGKLNPELLGNRGKYNDAIALAYDPKTKVIFFAEANTK  297 (381)
T ss_dssp             EEEEEHHHHSSTTCCCCCEEEEECCTTCCEEEEEECTTTCEEEEEESSSS
T ss_pred             EEEEEHHHhhCcchhhceEEeeecCCCCCcceEEEeCCCCeEEEEeccCC
Confidence            9988753   2222 2223332211 1112246786 8999999986654

>4a9v_A PHOX; hydrolase, beta-propeller; 1.10A {Pseudomonas fluorescens} PDB: 3zwu_A 4a9x_A*

Probab=98.72  E-value=7.9e-08  Score=82.19  Aligned_cols=77  Identities=19%  Similarity=0.213  Sum_probs=56.5

Q ss_pred             CcccCCccEEEcCCCcEEE-EeCCCCCCcccccccccccCCCceEEEEeCCCCeeEEeecc--ccccceEEEcCCCCEEE
Q 026118           91 SQLRFANDVIEASDGSLYF-TVSSTKFTPAEYYLDLVSGEPHGVLLKYDPSTNQTSLVLDG--LYFANGVALSEDERFLV  167 (243)
Q Consensus        91 ~~~~~~~~l~~d~~G~l~v-~~~~~~~~~~~~~~~~~~~~~~g~v~~~~~~~~~~~~~~~~--~~~~~gi~~~~dg~~l~  167 (243)
                      ..++.|++|+++++|+||| +|..  ++...    ..+......||++++++++++++...  ...++|++|+||+++||
T Consensus       473 ~~fnsPDnL~fd~~G~LWf~TD~~--~~~~g----~~~~~gnn~v~~~dp~tGel~~fl~~P~~aEpnGiafSPD~ktLf  546 (592)
T 4a9v_A          473 NMFNSPDGLGFDKAGRLWILTDGD--SSNAG----DFAGMGNNQMLCADPATGEIRRFMVGPIGCEVTGISFSPDQKTLF  546 (592)
T ss_dssp             TCCCCEEEEEECTTCCEEEEECCC--CCCSG----GGTTCCSCEEEEECTTTCCEEEEEECCTTCEEEEEEECTTSSEEE
T ss_pred             CccCCCCceEECCCCCEEEEeCCC--cCccc----cccccCCceEEEEeCCCCeEEEEEeCCCCccccCCEECCCCCEEE
Confidence            3568899999999999999 5543  11100    11122345899999998999988754  35689999999999999


Q ss_pred             EEEcCC
Q 026118          168 VCESWK  173 (243)
Q Consensus       168 v~~~~~  173 (243)
                      |+.+.-
T Consensus       547 V~vQHP  552 (592)
T 4a9v_A          547 VGIQHP  552 (592)
T ss_dssp             EEEEST
T ss_pred             EEEeCC
Confidence            997643

>1r5m_A SIR4-interacting protein SIF2; transcription corepressor, WD40 repeat, beta propeller; 1.55A {Saccharomyces cerevisiae}

Probab=98.71  E-value=3e-06  Score=69.79  Aligned_cols=182  Identities=10%  Similarity=-0.074  Sum_probs=114.6

Q ss_pred             cccEEEcCCCcEEEEeCCCcEEEEcc-CCcee-EecccCCccccceEEccCCCEEEEEeCCCcEEEEe-cCC--cEEEEe
Q 026118           12 PEDVSVDGNGVLYTATGDGWIKRMHP-NGTWE-DWHQVGSQSLLGLTTTKENNVIIVCDSQQGLLKVS-EEG--VTVLVS   86 (243)
Q Consensus        12 p~~i~~d~~g~l~~~~~~~~i~~~~~-~g~~~-~~~~~~~~~~~~i~~~~~g~l~~v~~~~~gl~~~~-~~g--~~~~~~   86 (243)
                      ..++++.+++.++++..++.|+.++. .++.. .+........ .+++++++++++++...+.+..++ .++  ...+..
T Consensus       209 ~~~~~~~~~~~~~~~~~~g~i~~~d~~~~~~~~~~~~~~~~i~-~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~  287 (425)
T 1r5m_A          209 GVDVEWVDDDKFVIPGPKGAIFVYQITEKTPTGKLIGHHGPIS-VLEFNDTNKLLLSASDDGTLRIWHGGNGNSQNCFYG  287 (425)
T ss_dssp             BSCCEEEETTEEEEECGGGCEEEEETTCSSCSEEECCCSSCEE-EEEEETTTTEEEEEETTSCEEEECSSSBSCSEEECC
T ss_pred             eeEEEEcCCCEEEEEcCCCeEEEEEcCCCceeeeeccCCCceE-EEEECCCCCEEEEEcCCCEEEEEECCCCccceEecC
Confidence            56788888888888888899999983 33322 2222222234 889999998867766556688888 555  333321


Q ss_pred             ccCCCcccCCccEEEcCCCcEEEEeCCCCCCcccccccccccCCCceEEEEeCCCCeeEEeec-cccccceEEEcCCCCE
Q 026118           87 QFNGSQLRFANDVIEASDGSLYFTVSSTKFTPAEYYLDLVSGEPHGVLLKYDPSTNQTSLVLD-GLYFANGVALSEDERF  165 (243)
Q Consensus        87 ~~~~~~~~~~~~l~~d~~G~l~v~~~~~~~~~~~~~~~~~~~~~~g~v~~~~~~~~~~~~~~~-~~~~~~gi~~~~dg~~  165 (243)
                           ....+.++++.++| ++++..                 ..+.|..+|..+++...... .......++++++++.
T Consensus       288 -----~~~~i~~~~~~~~~-~l~~~~-----------------~d~~i~i~d~~~~~~~~~~~~~~~~i~~~~~s~~~~~  344 (425)
T 1r5m_A          288 -----HSQSIVSASWVGDD-KVISCS-----------------MDGSVRLWSLKQNTLLALSIVDGVPIFAGRISQDGQK  344 (425)
T ss_dssp             -----CSSCEEEEEEETTT-EEEEEE-----------------TTSEEEEEETTTTEEEEEEECTTCCEEEEEECTTSSE
T ss_pred             -----CCccEEEEEECCCC-EEEEEe-----------------CCCcEEEEECCCCcEeEecccCCccEEEEEEcCCCCE
Confidence                 12346688999999 444421                 24678889988776554433 2445678999999996


Q ss_pred             EEEEEcCCCeEEEEEeecCCC------------------cceEEeccCCCC-CCCceEECCCCCEEE-EEecC
Q 026118          166 LVVCESWKFRCVKHFLKVSGR------------------TDREIFIDNLPG-GPDNVNLARDGSFWI-SIIKM  218 (243)
Q Consensus       166 l~v~~~~~~~i~~~~~~~~~~------------------~~~~~~~~~~~~-~~~~i~~d~~G~lwv-~~~~~  218 (243)
                      |+++ ..++.|..|+......                  .....+.....+ .+..++++++|++.+ +...+
T Consensus       345 l~~~-~~dg~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg  416 (425)
T 1r5m_A          345 YAVA-FMDGQVNVYDLKKLNSKSRSLYGNRDGILNPLPIPLYASYQSSQDNDYIFDLSWNCAGNKISVAYSLQ  416 (425)
T ss_dssp             EEEE-ETTSCEEEEECHHHHC--------------CEECCEEEEECCTTCCCCEEEEEECTTSSEEEEEESSS
T ss_pred             EEEE-ECCCeEEEEECCCCccceeeeecccccccCcccchhhhhhcCcccCCceEEEEccCCCceEEEEecCc
Confidence            6665 4568899999864210                  011222211112 566799999998554 44333

>1erj_A Transcriptional repressor TUP1; beta-propeller, transcription inhibitor; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1

Probab=98.70  E-value=1e-05  Score=66.81  Aligned_cols=182  Identities=13%  Similarity=0.020  Sum_probs=109.9

Q ss_pred             cccEEEcCCCcEEEEeCCCcEEEEc-cCCceeEecccC-------------------CccccceEEccCCCEEEEEeCCC
Q 026118           12 PEDVSVDGNGVLYTATGDGWIKRMH-PNGTWEDWHQVG-------------------SQSLLGLTTTKENNVIIVCDSQQ   71 (243)
Q Consensus        12 p~~i~~d~~g~l~~~~~~~~i~~~~-~~g~~~~~~~~~-------------------~~~~~~i~~~~~g~l~~v~~~~~   71 (243)
                      -.++++.++|.++++..++.+..++ .+++........                   .... +++++++|++|..+..++
T Consensus        67 V~~v~fspdg~~la~g~~~~v~i~~~~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~v~-~v~~s~dg~~l~s~~~d~  145 (393)
T 1erj_A           67 VCCVKFSNDGEYLATGCNKTTQVYRVSDGSLVARLSDDSAANKDPENLNTSSSPSSDLYIR-SVCFSPDGKFLATGAEDR  145 (393)
T ss_dssp             CCEEEECTTSSEEEEECBSCEEEEETTTCCEEEEECC-----------------CCCCBEE-EEEECTTSSEEEEEETTS
T ss_pred             EEEEEECCCCCEEEEEcCCcEEEEEecCCCEEEEecCccccccccccccccccCCCceeEE-EEEECCCCCEEEEEcCCC
Confidence            4578899999866655556677776 445432211100                   0123 789999999856666555


Q ss_pred             cEEEEe-cCC-cEEEEeccCCCcccCCccEEEcCCCcEEEEeCCCCCCcccccccccccCCCceEEEEeCCCCeeEEeec
Q 026118           72 GLLKVS-EEG-VTVLVSQFNGSQLRFANDVIEASDGSLYFTVSSTKFTPAEYYLDLVSGEPHGVLLKYDPSTNQTSLVLD  149 (243)
Q Consensus        72 gl~~~~-~~g-~~~~~~~~~~~~~~~~~~l~~d~~G~l~v~~~~~~~~~~~~~~~~~~~~~~g~v~~~~~~~~~~~~~~~  149 (243)
                      .|..++ .++ .....   .+ ....+.++++.++|+..++.+                 ..+.|..+|..+++......
T Consensus       146 ~i~iwd~~~~~~~~~~---~~-h~~~v~~~~~~p~~~~l~s~s-----------------~d~~v~iwd~~~~~~~~~~~  204 (393)
T 1erj_A          146 LIRIWDIENRKIVMIL---QG-HEQDIYSLDYFPSGDKLVSGS-----------------GDRTVRIWDLRTGQCSLTLS  204 (393)
T ss_dssp             CEEEEETTTTEEEEEE---CC-CSSCEEEEEECTTSSEEEEEE-----------------TTSEEEEEETTTTEEEEEEE
T ss_pred             eEEEEECCCCcEEEEE---cc-CCCCEEEEEEcCCCCEEEEec-----------------CCCcEEEEECCCCeeEEEEE
Confidence            677778 555 22221   11 123567889999998777632                 23578888888777654443


Q ss_pred             cccccceEEEcC-CCCEEEEEEcCCCeEEEEEeecCCCcceEEec------cCCCCCCCceEECCCCCEEEEEecC
Q 026118          150 GLYFANGVALSE-DERFLVVCESWKFRCVKHFLKVSGRTDREIFI------DNLPGGPDNVNLARDGSFWISIIKM  218 (243)
Q Consensus       150 ~~~~~~gi~~~~-dg~~l~v~~~~~~~i~~~~~~~~~~~~~~~~~------~~~~~~~~~i~~d~~G~lwv~~~~~  218 (243)
                      .......+++++ +++++..+ ..++.|..||......  ...+.      .........++++++|++.++....
T Consensus       205 ~~~~v~~~~~~~~~~~~l~~~-s~d~~v~iwd~~~~~~--~~~~~~~~~~~~~h~~~v~~v~~~~~g~~l~s~s~d  277 (393)
T 1erj_A          205 IEDGVTTVAVSPGDGKYIAAG-SLDRAVRVWDSETGFL--VERLDSENESGTGHKDSVYSVVFTRDGQSVVSGSLD  277 (393)
T ss_dssp             CSSCEEEEEECSTTCCEEEEE-ETTSCEEEEETTTCCE--EEEEC------CCCSSCEEEEEECTTSSEEEEEETT
T ss_pred             cCCCcEEEEEECCCCCEEEEE-cCCCcEEEEECCCCcE--EEeecccccCCCCCCCCEEEEEECCCCCEEEEEeCC
Confidence            344567789998 88855444 5678899998764321  11111      0111234568889999866555433

>3c75_H MADH, methylamine dehydrogenase heavy chain; copper proteins, electron transfer complex, TTQ, electron transport, oxidoreductase, periplasm, transport, metal- binding; HET: TRQ; 2.50A {Paracoccus versutus}

Probab=98.70  E-value=1.6e-06  Score=72.60  Aligned_cols=109  Identities=8%  Similarity=-0.048  Sum_probs=71.4

Q ss_pred             CC-cEEEEeCC-----CcEEEEc-cCCceeEecccCCccccceEEccCCCEEEEEeC----------CCcEEEEe-cCC-
Q 026118           20 NG-VLYTATGD-----GWIKRMH-PNGTWEDWHQVGSQSLLGLTTTKENNVIIVCDS----------QQGLLKVS-EEG-   80 (243)
Q Consensus        20 ~g-~l~~~~~~-----~~i~~~~-~~g~~~~~~~~~~~~~~~i~~~~~g~l~~v~~~----------~~gl~~~~-~~g-   80 (243)
                      ++ ++|+++..     +.|..+| .++++.........|  ++++++||+.+|+++.          .+.|..+| .++ 
T Consensus        83 ~~~~vyV~n~~~~~~~~~VsVID~~t~~vv~~I~vG~~P--gia~SpDgk~lyVan~~~~~~~~G~~~~~VsviD~~t~~  160 (426)
T 3c75_H           83 DARRVYIQDPAHFAAITQQFVIDGSTGRILGMTDGGFLP--HPVAAEDGSFFAQASTVFERIARGKRTDYVEVFDPVTFL  160 (426)
T ss_dssp             CTTEEEEEECTTTCSSEEEEEEETTTTEEEEEEEECSSC--EEEECTTSSCEEEEEEEEEETTEEEEEEEEEEECTTTCC
T ss_pred             CCCEEEEECCCcCCCCCeEEEEECCCCEEEEEEECCCCC--ceEECCCCCEEEEEeccccccccCCCCCEEEEEECCCCc
Confidence            44 69999842     6899999 455554433333444  8999999998799984          23488888 555 


Q ss_pred             -cEEEEeccCCC--cccCCccEEEcCCCc-EEEEeCCCCCCcccccccccccCCCceEEEEeCCCCeeEE
Q 026118           81 -VTVLVSQFNGS--QLRFANDVIEASDGS-LYFTVSSTKFTPAEYYLDLVSGEPHGVLLKYDPSTNQTSL  146 (243)
Q Consensus        81 -~~~~~~~~~~~--~~~~~~~l~~d~~G~-l~v~~~~~~~~~~~~~~~~~~~~~~g~v~~~~~~~~~~~~  146 (243)
                       ...+.......  ....|.++++++||+ +|+++..                ..+.|..+|..++++..
T Consensus       161 vv~~I~v~g~~r~~~g~~P~~~~~spDGk~lyV~n~~----------------~~~~VsVID~~t~kvv~  214 (426)
T 3c75_H          161 PIADIELPDAPRFLVGTYQWMNALTPDNKNLLFYQFS----------------PAPAVGVVDLEGKTFDR  214 (426)
T ss_dssp             EEEEEEETTCCCCCBSCCGGGSEECTTSSEEEEEECS----------------SSCEEEEEETTTTEEEE
T ss_pred             EEEEEECCCccccccCCCcceEEEcCCCCEEEEEecC----------------CCCeEEEEECCCCeEEE
Confidence             23332110010  024678999999985 8887532                23579999999887653

>2xzm_R RACK1; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_R

Probab=98.70  E-value=1.3e-05  Score=64.84  Aligned_cols=188  Identities=9%  Similarity=0.022  Sum_probs=108.3

Q ss_pred             cccEEEcCCCcEE-EEeCCCcEEEEc-cCCce-eEecccCCccccceEEccCCCEEEEEeCCCcEEEEe-cCCcEEEEec
Q 026118           12 PEDVSVDGNGVLY-TATGDGWIKRMH-PNGTW-EDWHQVGSQSLLGLTTTKENNVIIVCDSQQGLLKVS-EEGVTVLVSQ   87 (243)
Q Consensus        12 p~~i~~d~~g~l~-~~~~~~~i~~~~-~~g~~-~~~~~~~~~~~~~i~~~~~g~l~~v~~~~~gl~~~~-~~g~~~~~~~   87 (243)
                      -.++++.+++.+. .+..++.|..++ .+++. ..+........ +++++++|++++.+..++.+..++ ......... 
T Consensus        79 V~~~~~~~~~~~l~s~s~D~~v~lwd~~~~~~~~~~~~h~~~v~-~v~~sp~~~~l~s~~~d~~i~~wd~~~~~~~~~~-  156 (343)
T 2xzm_R           79 VSDLALSQENCFAISSSWDKTLRLWDLRTGTTYKRFVGHQSEVY-SVAFSPDNRQILSAGAEREIKLWNILGECKFSSA-  156 (343)
T ss_dssp             EEEEEECSSTTEEEEEETTSEEEEEETTSSCEEEEEECCCSCEE-EEEECSSTTEEEEEETTSCEEEEESSSCEEEECC-
T ss_pred             eEEEEECCCCCEEEEEcCCCcEEEEECCCCcEEEEEcCCCCcEE-EEEECCCCCEEEEEcCCCEEEEEeccCCceeeee-
Confidence            4568888888654 555888999998 44543 33322223334 899999999856666555677777 422221111 


Q ss_pred             cCCCcccCCccEEEcCCC----------cEEEEeCCCCCCcccccccccccCCCceEEEEeCCCCeeE-Eeeccccccce
Q 026118           88 FNGSQLRFANDVIEASDG----------SLYFTVSSTKFTPAEYYLDLVSGEPHGVLLKYDPSTNQTS-LVLDGLYFANG  156 (243)
Q Consensus        88 ~~~~~~~~~~~l~~d~~G----------~l~v~~~~~~~~~~~~~~~~~~~~~~g~v~~~~~~~~~~~-~~~~~~~~~~g  156 (243)
                      ........+.++++.|++          .++++.+                 ..+.|..+|.. .+.. .+.........
T Consensus       157 ~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~l~s~~-----------------~d~~i~iwd~~-~~~~~~~~~h~~~v~~  218 (343)
T 2xzm_R          157 EKENHSDWVSCVRYSPIMKSANKVQPFAPYFASVG-----------------WDGRLKVWNTN-FQIRYTFKAHESNVNH  218 (343)
T ss_dssp             TTTSCSSCEEEEEECCCCCSCSCCCSSCCEEEEEE-----------------TTSEEEEEETT-TEEEEEEECCSSCEEE
T ss_pred             cccCCCceeeeeeeccccccccccCCCCCEEEEEc-----------------CCCEEEEEcCC-CceeEEEcCccccceE
Confidence            111112345677777765          4444421                 24577777855 3333 23333445678


Q ss_pred             EEEcCCCCEEEEEEcCCCeEEEEEeecCCCcceEEeccCCCCCCCceEECCCCCEEEEEecCCchhh
Q 026118          157 VALSEDERFLVVCESWKFRCVKHFLKVSGRTDREIFIDNLPGGPDNVNLARDGSFWISIIKMDPKGI  223 (243)
Q Consensus       157 i~~~~dg~~l~v~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~i~~d~~G~lwv~~~~~~~~~~  223 (243)
                      ++|+|+|++|..+ ..++.|..|++...... ...+.  .......+++++++.+..+...+....+
T Consensus       219 ~~~s~~g~~l~sg-s~dg~v~iwd~~~~~~~-~~~~~--~~~~v~~v~~sp~~~~la~~~d~~v~iw  281 (343)
T 2xzm_R          219 LSISPNGKYIATG-GKDKKLLIWDILNLTYP-QREFD--AGSTINQIAFNPKLQWVAVGTDQGVKIF  281 (343)
T ss_dssp             EEECTTSSEEEEE-ETTCEEEEEESSCCSSC-SEEEE--CSSCEEEEEECSSSCEEEEEESSCEEEE
T ss_pred             EEECCCCCEEEEE-cCCCeEEEEECCCCccc-ceeec--CCCcEEEEEECCCCCEEEEECCCCEEEE
Confidence            9999999965554 56789999997432111 11221  1123566888888886655544443333

>3zwl_B Eukaryotic translation initiation factor 3 subuni; 2.20A {Saccharomyces cerevisiae}

Probab=98.69  E-value=1.3e-05  Score=64.69  Aligned_cols=186  Identities=12%  Similarity=0.011  Sum_probs=110.1

Q ss_pred             CcccEEEcCCCcEE-EEeCC-----CcEEEEcc--CCc---ee--------EecccCC--ccccceEEccCCCEEEEEeC
Q 026118           11 HPEDVSVDGNGVLY-TATGD-----GWIKRMHP--NGT---WE--------DWHQVGS--QSLLGLTTTKENNVIIVCDS   69 (243)
Q Consensus        11 ~p~~i~~d~~g~l~-~~~~~-----~~i~~~~~--~g~---~~--------~~~~~~~--~~~~~i~~~~~g~l~~v~~~   69 (243)
                      ...++++.+++..+ ++..+     +.|..++.  ...   ..        .+.....  ... .+++++++++++++..
T Consensus       117 ~v~~~~~~~~~~~l~~~~~~~~~~~g~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~l~~~~~  195 (369)
T 3zwl_B          117 PVKRVEFSPCGNYFLAILDNVMKNPGSINIYEIERDSATHELTKVSEEPIHKIITHEGLDAAT-VAGWSTKGKYIIAGHK  195 (369)
T ss_dssp             CEEEEEECTTSSEEEEEECCBTTBCCEEEEEEEEECTTTCCEEEECSSCSEEEECCTTCCCEE-EEEECGGGCEEEEEET
T ss_pred             CeEEEEEccCCCEEEEecCCccCCCCEEEEEEecCCccceeecccccceeeeccCCcCcccee-EEEEcCCCCEEEEEcC
Confidence            45678888888644 44455     77877772  111   11        1111111  334 7889999998677766


Q ss_pred             CCcEEEEe-cCCcEEEEeccCCCcccCCccEEEcCCCcEEEEeCCCCCCcccccccccccCCCceEEEEeCCCCeeEEee
Q 026118           70 QQGLLKVS-EEGVTVLVSQFNGSQLRFANDVIEASDGSLYFTVSSTKFTPAEYYLDLVSGEPHGVLLKYDPSTNQTSLVL  148 (243)
Q Consensus        70 ~~gl~~~~-~~g~~~~~~~~~~~~~~~~~~l~~d~~G~l~v~~~~~~~~~~~~~~~~~~~~~~g~v~~~~~~~~~~~~~~  148 (243)
                      .+.|..++ .++...+.....  ....+.+++++++|+++++.+                 ..+.|..+|..+++.....
T Consensus       196 dg~i~i~d~~~~~~~~~~~~~--~~~~v~~~~~~~~~~~l~~~~-----------------~d~~i~v~d~~~~~~~~~~  256 (369)
T 3zwl_B          196 DGKISKYDVSNNYEYVDSIDL--HEKSISDMQFSPDLTYFITSS-----------------RDTNSFLVDVSTLQVLKKY  256 (369)
T ss_dssp             TSEEEEEETTTTTEEEEEEEC--CSSCEEEEEECTTSSEEEEEE-----------------TTSEEEEEETTTCCEEEEE
T ss_pred             CCEEEEEECCCCcEeEEEEec--CCCceeEEEECCCCCEEEEec-----------------CCceEEEEECCCCceeeee
Confidence            56688888 552122111111  123567889999998666532                 2357888998877766555


Q ss_pred             ccccccceEEEcCCCCEEEEEEcCCC-------------eEEEEEeecCCCcceEEeccCCCCCCCceEECCCCCEEEEE
Q 026118          149 DGLYFANGVALSEDERFLVVCESWKF-------------RCVKHFLKVSGRTDREIFIDNLPGGPDNVNLARDGSFWISI  215 (243)
Q Consensus       149 ~~~~~~~gi~~~~dg~~l~v~~~~~~-------------~i~~~~~~~~~~~~~~~~~~~~~~~~~~i~~d~~G~lwv~~  215 (243)
                      ........+++++++++++++.....             .+..++....  .....+. ........++++++|++.++.
T Consensus       257 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~--~~~~~~~-~~~~~v~~~~~s~~~~~l~s~  333 (369)
T 3zwl_B          257 ETDCPLNTAVITPLKEFIILGGGQEAKDVTTTSANEGKFEARFYHKIFE--EEIGRVQ-GHFGPLNTVAISPQGTSYASG  333 (369)
T ss_dssp             ECSSCEEEEEECSSSSEEEEEECCC-------------CEEEEEETTTC--CEEEEEE-CCSSCEEEEEECTTSSEEEEE
T ss_pred             cCCCCceeEEecCCCceEEEeecCCCceEEEEecCCCcceeEEEecCCC--cchhhee-cccCcEEEEEECCCCCEEEEE
Confidence            44556678999999998877754322             5666665432  1112221 223345668899999866655


Q ss_pred             ecCC
Q 026118          216 IKMD  219 (243)
Q Consensus       216 ~~~~  219 (243)
                      ...+
T Consensus       334 ~~dg  337 (369)
T 3zwl_B          334 GEDG  337 (369)
T ss_dssp             ETTS
T ss_pred             cCCC
Confidence            4433

>4aez_A CDC20, WD repeat-containing protein SLP1; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe}

Probab=98.69  E-value=1.4e-05  Score=66.12  Aligned_cols=185  Identities=11%  Similarity=-0.030  Sum_probs=114.0

Q ss_pred             cccEEEcCCCcEEEEeCCCcEEEEccC--Cc-eeEecccCCccccceEEccCCCEEEEEeCCCcEEEEe-cCC-cEEEEe
Q 026118           12 PEDVSVDGNGVLYTATGDGWIKRMHPN--GT-WEDWHQVGSQSLLGLTTTKENNVIIVCDSQQGLLKVS-EEG-VTVLVS   86 (243)
Q Consensus        12 p~~i~~d~~g~l~~~~~~~~i~~~~~~--g~-~~~~~~~~~~~~~~i~~~~~g~l~~v~~~~~gl~~~~-~~g-~~~~~~   86 (243)
                      ..++++++ ..|+.+..++.|..++..  +. ...+........ ++.+++++++++++..++.|..++ .++ ......
T Consensus       179 v~~~~~~~-~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~-~~~~~~~~~~l~s~~~d~~v~iwd~~~~~~~~~~~  256 (401)
T 4aez_A          179 VGCLSWNR-HVLSSGSRSGAIHHHDVRIANHQIGTLQGHSSEVC-GLAWRSDGLQLASGGNDNVVQIWDARSSIPKFTKT  256 (401)
T ss_dssp             EEEEEEET-TEEEEEETTSEEEEEETTSSSCEEEEEECCSSCEE-EEEECTTSSEEEEEETTSCEEEEETTCSSEEEEEC
T ss_pred             eEEEEECC-CEEEEEcCCCCEEEEecccCcceeeEEcCCCCCee-EEEEcCCCCEEEEEeCCCeEEEccCCCCCccEEec
Confidence            34455533 245566678888888832  22 223322223344 889999999867766656688888 555 222111


Q ss_pred             ccCCCcccCCccEEEcCCC-cEEEEeCCCCCCcccccccccccCCCceEEEEeCCCCeeEEeeccccccceEEEcCCCCE
Q 026118           87 QFNGSQLRFANDVIEASDG-SLYFTVSSTKFTPAEYYLDLVSGEPHGVLLKYDPSTNQTSLVLDGLYFANGVALSEDERF  165 (243)
Q Consensus        87 ~~~~~~~~~~~~l~~d~~G-~l~v~~~~~~~~~~~~~~~~~~~~~~g~v~~~~~~~~~~~~~~~~~~~~~gi~~~~dg~~  165 (243)
                      .    ....+.++++.|++ .++++..+               ...+.|..+|..+++.............++++++++.
T Consensus       257 ~----~~~~v~~~~~~p~~~~ll~~~~g---------------s~d~~i~i~d~~~~~~~~~~~~~~~v~~~~~s~~~~~  317 (401)
T 4aez_A          257 N----HNAAVKAVAWCPWQSNLLATGGG---------------TMDKQIHFWNAATGARVNTVDAGSQVTSLIWSPHSKE  317 (401)
T ss_dssp             C----CSSCCCEEEECTTSTTEEEEECC---------------TTTCEEEEEETTTCCEEEEEECSSCEEEEEECSSSSE
T ss_pred             C----CcceEEEEEECCCCCCEEEEecC---------------CCCCEEEEEECCCCCEEEEEeCCCcEEEEEECCCCCe
Confidence            1    12356788999976 46665321               1346788999887776555444456788999999997


Q ss_pred             EEEEE-cCCCeEEEEEeecCCCcceEEeccCCCCCCCceEECCCCCEEEEEecC
Q 026118          166 LVVCE-SWKFRCVKHFLKVSGRTDREIFIDNLPGGPDNVNLARDGSFWISIIKM  218 (243)
Q Consensus       166 l~v~~-~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~i~~d~~G~lwv~~~~~  218 (243)
                      ++++. ..++.|..|+...........+. ...+....++++++|++.++....
T Consensus       318 l~~~~g~~dg~i~v~~~~~~~~~~~~~~~-~h~~~v~~~~~s~dg~~l~s~~~d  370 (401)
T 4aez_A          318 IMSTHGFPDNNLSIWSYSSSGLTKQVDIP-AHDTRVLYSALSPDGRILSTAASD  370 (401)
T ss_dssp             EEEEECTTTCEEEEEEEETTEEEEEEEEE-CCSSCCCEEEECTTSSEEEEECTT
T ss_pred             EEEEeecCCCcEEEEecCCccceeEEEec-CCCCCEEEEEECCCCCEEEEEeCC
Confidence            77653 35788999998753222222221 223456678999999865554433

>1r5m_A SIR4-interacting protein SIF2; transcription corepressor, WD40 repeat, beta propeller; 1.55A {Saccharomyces cerevisiae}

Probab=98.69  E-value=6.5e-06  Score=67.80  Aligned_cols=202  Identities=13%  Similarity=0.069  Sum_probs=103.6

Q ss_pred             CcccEEEcCCCc-EEEEeCCCcEEEEccCCceeEecccCCccccceEEccCCCEEEEEeCCCcEEEEe-cCC-cEEEEec
Q 026118           11 HPEDVSVDGNGV-LYTATGDGWIKRMHPNGTWEDWHQVGSQSLLGLTTTKENNVIIVCDSQQGLLKVS-EEG-VTVLVSQ   87 (243)
Q Consensus        11 ~p~~i~~d~~g~-l~~~~~~~~i~~~~~~g~~~~~~~~~~~~~~~i~~~~~g~l~~v~~~~~gl~~~~-~~g-~~~~~~~   87 (243)
                      ...++++.++|. |.++..++.|..++.+++..........+...+++++++++++++...+.+..++ .++ .......
T Consensus       110 ~v~~~~~s~~~~~l~~~~~dg~i~i~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~  189 (425)
T 1r5m_A          110 QVTCLAWSHDGNSIVTGVENGELRLWNKTGALLNVLNFHRAPIVSVKWNKDGTHIISMDVENVTILWNVISGTVMQHFEL  189 (425)
T ss_dssp             CEEEEEECTTSSEEEEEETTSCEEEEETTSCEEEEECCCCSCEEEEEECTTSSEEEEEETTCCEEEEETTTTEEEEEECC
T ss_pred             ceEEEEEcCCCCEEEEEeCCCeEEEEeCCCCeeeeccCCCccEEEEEECCCCCEEEEEecCCeEEEEECCCCcEEEEeec
Confidence            456788999886 5566688889999865554332222222333899999999867777666677888 555 2221111


Q ss_pred             cCCC-----------cccCCccEEEcCCCcEEEEeCCCC---------CCcccc--------cc-------cccccCCCc
Q 026118           88 FNGS-----------QLRFANDVIEASDGSLYFTVSSTK---------FTPAEY--------YL-------DLVSGEPHG  132 (243)
Q Consensus        88 ~~~~-----------~~~~~~~l~~d~~G~l~v~~~~~~---------~~~~~~--------~~-------~~~~~~~~g  132 (243)
                      ....           ....+.++++.+++.++++...+.         -.....        ..       .+......+
T Consensus       190 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~i~~~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~  269 (425)
T 1r5m_A          190 KETGGSSINAENHSGDGSLGVDVEWVDDDKFVIPGPKGAIFVYQITEKTPTGKLIGHHGPISVLEFNDTNKLLLSASDDG  269 (425)
T ss_dssp             C---------------CCCBSCCEEEETTEEEEECGGGCEEEEETTCSSCSEEECCCSSCEEEEEEETTTTEEEEEETTS
T ss_pred             cccCccceeeccccCCcceeeEEEEcCCCEEEEEcCCCeEEEEEcCCCceeeeeccCCCceEEEEECCCCCEEEEEcCCC
Confidence            0000           000023334433333332221100         000000        00       001112234


Q ss_pred             eEEEEeCCCCeeEEee-ccccccceEEEcCCCCEEEEEEcCCCeEEEEEeecCCCcceEEeccCCCCCCCceEECCCCCE
Q 026118          133 VLLKYDPSTNQTSLVL-DGLYFANGVALSEDERFLVVCESWKFRCVKHFLKVSGRTDREIFIDNLPGGPDNVNLARDGSF  211 (243)
Q Consensus       133 ~v~~~~~~~~~~~~~~-~~~~~~~gi~~~~dg~~l~v~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~i~~d~~G~l  211 (243)
                      .|..++..+++..... ........+++++++ .++.+ ..++.|..|+.....  ....+. .....+..++++++|++
T Consensus       270 ~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~-~l~~~-~~d~~i~i~d~~~~~--~~~~~~-~~~~~i~~~~~s~~~~~  344 (425)
T 1r5m_A          270 TLRIWHGGNGNSQNCFYGHSQSIVSASWVGDD-KVISC-SMDGSVRLWSLKQNT--LLALSI-VDGVPIFAGRISQDGQK  344 (425)
T ss_dssp             CEEEECSSSBSCSEEECCCSSCEEEEEEETTT-EEEEE-ETTSEEEEEETTTTE--EEEEEE-CTTCCEEEEEECTTSSE
T ss_pred             EEEEEECCCCccceEecCCCccEEEEEECCCC-EEEEE-eCCCcEEEEECCCCc--EeEecc-cCCccEEEEEEcCCCCE
Confidence            5666666654433322 223445789999999 45555 467899999976431  112221 22234566888999885


Q ss_pred             EEEEec
Q 026118          212 WISIIK  217 (243)
Q Consensus       212 wv~~~~  217 (243)
                      .+....
T Consensus       345 l~~~~~  350 (425)
T 1r5m_A          345 YAVAFM  350 (425)
T ss_dssp             EEEEET
T ss_pred             EEEEEC
Confidence            554443

>3pe7_A Oligogalacturonate lyase; seven-bladed beta-propeller; 1.65A {Yersinia enterocolitica subsp}

Probab=98.69  E-value=2.6e-06  Score=69.84  Aligned_cols=194  Identities=12%  Similarity=0.116  Sum_probs=107.2

Q ss_pred             EEEcCCCc-EEEEeC-CC--cEEEEcc-CCceeEecccCCccccceEEccCCCEEEEEeCCCcEEEEe-cCC-cEEEEec
Q 026118           15 VSVDGNGV-LYTATG-DG--WIKRMHP-NGTWEDWHQVGSQSLLGLTTTKENNVIIVCDSQQGLLKVS-EEG-VTVLVSQ   87 (243)
Q Consensus        15 i~~d~~g~-l~~~~~-~~--~i~~~~~-~g~~~~~~~~~~~~~~~i~~~~~g~l~~v~~~~~gl~~~~-~~g-~~~~~~~   87 (243)
                      +++.+||. |+++.. ++  .|+.++. .++.............++++++||+.|+++.....++.++ .++ .+.+...
T Consensus        41 ~~~SpDg~~l~~~~~~~g~~~l~~~d~~~g~~~~lt~~~~~~~~~~~~spdg~~l~~~~~~~~l~~~d~~~g~~~~~~~~  120 (388)
T 3pe7_A           41 KCFTRDGSKLLFGGAFDGPWNYYLLDLNTQVATQLTEGRGDNTFGGFLSPDDDALFYVKDGRNLMRVDLATLEENVVYQV  120 (388)
T ss_dssp             CCBCTTSCEEEEEECTTSSCEEEEEETTTCEEEECCCSSCBCSSSCEECTTSSEEEEEETTTEEEEEETTTCCEEEEEEC
T ss_pred             ccCCCCCCEEEEEEcCCCCceEEEEeCCCCceEEeeeCCCCCccceEEcCCCCEEEEEeCCCeEEEEECCCCcceeeeec
Confidence            56778885 555543 44  4888884 4555444332222221578999998767766556799999 666 4444332


Q ss_pred             cCCCcccCCccEEEcCCCcEEEEeCC--CCCCc-cccc--ccccccCCCceEEEEeCCCCeeEEeeccccccceEEEcC-
Q 026118           88 FNGSQLRFANDVIEASDGSLYFTVSS--TKFTP-AEYY--LDLVSGEPHGVLLKYDPSTNQTSLVLDGLYFANGVALSE-  161 (243)
Q Consensus        88 ~~~~~~~~~~~l~~d~~G~l~v~~~~--~~~~~-~~~~--~~~~~~~~~g~v~~~~~~~~~~~~~~~~~~~~~gi~~~~-  161 (243)
                      ...  .........+++|++.++...  ..+.+ ..+.  ...........|+.+|.++++.+.+.........++++| 
T Consensus       121 ~~~--~~~~~~~~~~~dg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~~~g~~~~l~~~~~~~~~~~~sp~  198 (388)
T 3pe7_A          121 PAE--WVGYGTWVANSDCTKLVGIEIRREDWVPLTDWKKFHEFYFTKPCCRLMRVDLKTGESTVILQENQWLGHPIYRPY  198 (388)
T ss_dssp             CTT--EEEEEEEEECTTSSEEEEEEEEGGGCCCCCSHHHHHHHGGGCCCEEEEEEETTTCCEEEEEEESSCEEEEEEETT
T ss_pred             hhh--cccccceeECCCCCeeccccccCcccccccccchhhhhhccCCcceEEEEECCCCceEEeecCCccccccEECCC
Confidence            111  011112235788887764210  00000 0000  000112234689999999998887765555567899999 


Q ss_pred             CCCEEEEEEcC-----CCeEEEEEeecCCCcceEEeccCCCC-CCCceEECCCCC-EEE
Q 026118          162 DERFLVVCESW-----KFRCVKHFLKVSGRTDREIFIDNLPG-GPDNVNLARDGS-FWI  213 (243)
Q Consensus       162 dg~~l~v~~~~-----~~~i~~~~~~~~~~~~~~~~~~~~~~-~~~~i~~d~~G~-lwv  213 (243)
                      ||+.|.++...     ...|+.++.++...   +.+.....+ .....+++++|+ |+.
T Consensus       199 dg~~l~~~~~~~~~~~~~~l~~~d~~~~~~---~~l~~~~~~~~~~~~~~spdg~~l~~  254 (388)
T 3pe7_A          199 DDSTVAFCHEGPHDLVDARMWLINEDGTNM---RKVKTHAEGESCTHEFWVPDGSALVY  254 (388)
T ss_dssp             EEEEEEEEECSCTTTSSCSEEEEETTSCCC---EESCCCCTTEEEEEEEECTTSSCEEE
T ss_pred             CCCEEEEEEecCCCCCcceEEEEeCCCCce---EEeeeCCCCcccccceECCCCCEEEE
Confidence            99877665433     34789888765322   222211111 123467788887 533

>2vdu_B TRNA (guanine-N(7)-)-methyltransferase- associated WD repeat protein TRM82; S-adenosyl-L-methionine, tRNA processing, phosphorylation, M7G, spout MT, WD repeat; 2.40A {Saccharomyces cerevisiae}

Probab=98.68  E-value=4.5e-06  Score=70.20  Aligned_cols=139  Identities=14%  Similarity=0.124  Sum_probs=83.7

Q ss_pred             ceEEccCCCEEEEEe-CCCcEEEEe-c--CC-c-EEEEeccCCCcccCCccEEEcCCCcEEEEeCCCCCCcccccccccc
Q 026118           54 GLTTTKENNVIIVCD-SQQGLLKVS-E--EG-V-TVLVSQFNGSQLRFANDVIEASDGSLYFTVSSTKFTPAEYYLDLVS  127 (243)
Q Consensus        54 ~i~~~~~g~l~~v~~-~~~gl~~~~-~--~g-~-~~~~~~~~~~~~~~~~~l~~d~~G~l~v~~~~~~~~~~~~~~~~~~  127 (243)
                      +++++++|++|+++. ..+.+..++ .  ++ . ..+....   ....+.+++++|+|++.++.+               
T Consensus       107 ~~~~s~d~~~l~~~~~~dg~v~iwd~~~~~~~~~~~~~~~~---~~~~v~~~~~sp~~~~l~~~~---------------  168 (450)
T 2vdu_B          107 NLRLTSDESRLIACADSDKSLLVFDVDKTSKNVLKLRKRFC---FSKRPNAISIAEDDTTVIIAD---------------  168 (450)
T ss_dssp             EEEECTTSSEEEEEEGGGTEEEEEEECSSSSSCEEEEEEEE---CSSCEEEEEECTTSSEEEEEE---------------
T ss_pred             EEEEcCCCCEEEEEECCCCeEEEEECcCCCCceeeeeeccc---CCCCceEEEEcCCCCEEEEEe---------------
Confidence            789999999853444 334466666 5  55 3 3332111   113467889999997665521               


Q ss_pred             cCCCceEEEEeCCCCeeE-----EeeccccccceEEEcCC---CCEEEEEEcCCCeEEEEEeecCCCcceEEeccCCCCC
Q 026118          128 GEPHGVLLKYDPSTNQTS-----LVLDGLYFANGVALSED---ERFLVVCESWKFRCVKHFLKVSGRTDREIFIDNLPGG  199 (243)
Q Consensus       128 ~~~~g~v~~~~~~~~~~~-----~~~~~~~~~~gi~~~~d---g~~l~v~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~  199 (243)
                        ..+.|+.++..+++..     .+.........++|+|+   +++|+.+ ..++.|..|++.....  ...+.......
T Consensus       169 --~~g~v~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~sp~~~~~~~l~s~-~~d~~i~vwd~~~~~~--~~~~~~~h~~~  243 (450)
T 2vdu_B          169 --KFGDVYSIDINSIPEEKFTQEPILGHVSMLTDVHLIKDSDGHQFIITS-DRDEHIKISHYPQCFI--VDKWLFGHKHF  243 (450)
T ss_dssp             --TTSEEEEEETTSCCCSSCCCCCSEECSSCEEEEEEEECTTSCEEEEEE-ETTSCEEEEEESCTTC--EEEECCCCSSC
T ss_pred             --CCCcEEEEecCCcccccccceeeecccCceEEEEEcCCCCCCcEEEEE-cCCCcEEEEECCCCce--eeeeecCCCCc
Confidence              2357888887655433     12222345678999999   8755555 4678899999875322  22222222334


Q ss_pred             CCceEECCCCCEEEEEe
Q 026118          200 PDNVNLARDGSFWISII  216 (243)
Q Consensus       200 ~~~i~~d~~G~lwv~~~  216 (243)
                      +..+++. +|++.++..
T Consensus       244 v~~~~~s-d~~~l~s~~  259 (450)
T 2vdu_B          244 VSSICCG-KDYLLLSAG  259 (450)
T ss_dssp             EEEEEEC-STTEEEEEE
T ss_pred             eEEEEEC-CCCEEEEEe
Confidence            5678888 887555443

>3vl1_A 26S proteasome regulatory subunit RPN14; beta-propeller, chaperone, RPT6; 1.60A {Saccharomyces cerevisiae} PDB: 3acp_A

Probab=98.67  E-value=6.8e-06  Score=67.98  Aligned_cols=176  Identities=11%  Similarity=0.086  Sum_probs=106.2

Q ss_pred             EEcCCCc-EEEEeCCCcEEEEcc-CCceeEecccCCccccceEEccCCCEEEEEeCCCcEEEEe-cCC--cEEEEeccCC
Q 026118           16 SVDGNGV-LYTATGDGWIKRMHP-NGTWEDWHQVGSQSLLGLTTTKENNVIIVCDSQQGLLKVS-EEG--VTVLVSQFNG   90 (243)
Q Consensus        16 ~~d~~g~-l~~~~~~~~i~~~~~-~g~~~~~~~~~~~~~~~i~~~~~g~l~~v~~~~~gl~~~~-~~g--~~~~~~~~~~   90 (243)
                      ++.++|. |.++..++.|..++. .++..........+...+++++++++|+++..++.+..++ .++  ...+..    
T Consensus       104 ~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~s~d~~i~iwd~~~~~~~~~~~~----  179 (420)
T 3vl1_A          104 TAKLQMRRFILGTTEGDIKVLDSNFNLQREIDQAHVSEITKLKFFPSGEALISSSQDMQLKIWSVKDGSNPRTLIG----  179 (420)
T ss_dssp             EECSSSCEEEEEETTSCEEEECTTSCEEEEETTSSSSCEEEEEECTTSSEEEEEETTSEEEEEETTTCCCCEEEEC----
T ss_pred             EEecCCCEEEEEECCCCEEEEeCCCcceeeecccccCccEEEEECCCCCEEEEEeCCCeEEEEeCCCCcCceEEcC----
Confidence            4456775 445568888999984 4444433222223333899999999867776655677888 555  333321    


Q ss_pred             CcccCCccEEEcCCCcEEEEeCCCCCCcccccccccccCCCceEEEEeCCCCeeEEeecc--------------------
Q 026118           91 SQLRFANDVIEASDGSLYFTVSSTKFTPAEYYLDLVSGEPHGVLLKYDPSTNQTSLVLDG--------------------  150 (243)
Q Consensus        91 ~~~~~~~~l~~d~~G~l~v~~~~~~~~~~~~~~~~~~~~~~g~v~~~~~~~~~~~~~~~~--------------------  150 (243)
                       ....+.++++.++|+++++.+                 ..+.|..+|..+++.......                    
T Consensus       180 -h~~~v~~~~~~~~~~~l~s~~-----------------~d~~v~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~  241 (420)
T 3vl1_A          180 -HRATVTDIAIIDRGRNVLSAS-----------------LDGTIRLWECGTGTTIHTFNRKENPHDGVNSIALFVGTDRQ  241 (420)
T ss_dssp             -CSSCEEEEEEETTTTEEEEEE-----------------TTSCEEEEETTTTEEEEEECBTTBTTCCEEEEEEEECCCSS
T ss_pred             -CCCcEEEEEEcCCCCEEEEEc-----------------CCCcEEEeECCCCceeEEeecCCCCCCCccEEEEecCCcce
Confidence             123567889999998766532                 234677778776655443221                    


Q ss_pred             -----ccccceEEEcCCCCEEEEEEcCCCeEEEEEeecCCCcceEEeccCCCCCCCceEECCCCC-EEEEEe
Q 026118          151 -----LYFANGVALSEDERFLVVCESWKFRCVKHFLKVSGRTDREIFIDNLPGGPDNVNLARDGS-FWISII  216 (243)
Q Consensus       151 -----~~~~~gi~~~~dg~~l~v~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~i~~d~~G~-lwv~~~  216 (243)
                           ......+++++++++|+++ ..++.|..|+.....  ....+..........++++++|. +.++..
T Consensus       242 ~~~~~~~~v~~~~~s~~~~~l~~~-~~dg~i~i~d~~~~~--~~~~~~~~~~~~v~~~~~~~~~~~~l~~g~  310 (420)
T 3vl1_A          242 LHEISTSKKNNLEFGTYGKYVIAG-HVSGVITVHNVFSKE--QTIQLPSKFTCSCNSLTVDGNNANYIYAGY  310 (420)
T ss_dssp             CGGGCCCCCCTTCSSCTTEEEEEE-ETTSCEEEEETTTCC--EEEEECCTTSSCEEEEEECSSCTTEEEEEE
T ss_pred             eeecccCcccceEEcCCCCEEEEE-cCCCeEEEEECCCCc--eeEEcccccCCCceeEEEeCCCCCEEEEEe
Confidence                 1223457788999966655 456889999976431  12222212223456688888887 444443

>4gqb_B Methylosome protein 50; TIM barrel, beta-propeller, methyltransferase, methylation, transferase-protein binding complex; HET: 0XU; 2.06A {Homo sapiens}

Probab=98.67  E-value=3.9e-06  Score=68.34  Aligned_cols=180  Identities=10%  Similarity=0.003  Sum_probs=106.2

Q ss_pred             cccEEEcCCCcE-EEEeCCCcEEEEc-cCCceeEecc-cCCccccceEEccCCC-EEEEEeCCCcEEEEe-cCC-c-EEE
Q 026118           12 PEDVSVDGNGVL-YTATGDGWIKRMH-PNGTWEDWHQ-VGSQSLLGLTTTKENN-VIIVCDSQQGLLKVS-EEG-V-TVL   84 (243)
Q Consensus        12 p~~i~~d~~g~l-~~~~~~~~i~~~~-~~g~~~~~~~-~~~~~~~~i~~~~~g~-l~~v~~~~~gl~~~~-~~g-~-~~~   84 (243)
                      -.+|++.++|.+ ..+..++.|..++ .+++...... ...... .+++++++. ++..+..++.|..+| .++ . ..+
T Consensus       130 V~~v~~spdg~~l~sgs~d~~i~iwd~~~~~~~~~~~~h~~~V~-~~~~~~~~~~~l~s~s~D~~v~iwd~~~~~~~~~~  208 (344)
T 4gqb_B          130 VSTVSVLSSGTQAVSGSKDICIKVWDLAQQVVLSSYRAHAAQVT-CVAASPHKDSVFLSCSEDNRILLWDTRCPKPASQI  208 (344)
T ss_dssp             EEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEECCCSSCEE-EEEECSSCTTEEEEEETTSCEEEEETTSSSCEEEC
T ss_pred             EEEEEECCCCCEEEEEeCCCeEEEEECCCCcEEEEEcCcCCceE-EEEecCCCCCceeeeccccccccccccccceeeee
Confidence            457889998864 4556888999998 4554433222 222334 789988875 534555555677788 555 2 222


Q ss_pred             EeccCCCcccCCccEEEcCC-CcEEEEeCCCCCCcccccccccccCCCceEEEEeCCCCeeEE-eeccccccceEEEcCC
Q 026118           85 VSQFNGSQLRFANDVIEASD-GSLYFTVSSTKFTPAEYYLDLVSGEPHGVLLKYDPSTNQTSL-VLDGLYFANGVALSED  162 (243)
Q Consensus        85 ~~~~~~~~~~~~~~l~~d~~-G~l~v~~~~~~~~~~~~~~~~~~~~~~g~v~~~~~~~~~~~~-~~~~~~~~~gi~~~~d  162 (243)
                      ....   ....+.++++.++ ++++++.+                 ..+.|..+|..+++... +.......+.++|+|+
T Consensus       209 ~~~~---~~~~~~~~~~~p~~~~~l~sg~-----------------~dg~v~~wd~~~~~~~~~~~~h~~~v~~v~fsp~  268 (344)
T 4gqb_B          209 GCSA---PGYLPTSLAWHPQQSEVFVFGD-----------------ENGTVSLVDTKSTSCVLSSAVHSQCVTGLVFSPH  268 (344)
T ss_dssp             C-------CCCEEEEEECSSCTTEEEEEE-----------------TTSEEEEEESCC--CCEEEECCSSCEEEEEECSS
T ss_pred             ecce---eeccceeeeecCCCCcceEEec-----------------cCCcEEEEECCCCcEEEEEcCCCCCEEEEEEccC
Confidence            1111   1124567888885 56666522                 23578888887665443 3333445678999999


Q ss_pred             CCEEEEEEcCCCeEEEEEeecCCCcceEEeccCCCCCCCceEECCCCC-EEEEEe
Q 026118          163 ERFLVVCESWKFRCVKHFLKVSGRTDREIFIDNLPGGPDNVNLARDGS-FWISII  216 (243)
Q Consensus       163 g~~l~v~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~i~~d~~G~-lwv~~~  216 (243)
                      +..+.++...++.|..+|....   +...+. .-.+....+++.++|. |.++..
T Consensus       269 g~~~lasgs~D~~i~vwd~~~~---~~~~~~-~H~~~V~~v~~sp~~~~llas~s  319 (344)
T 4gqb_B          269 SVPFLASLSEDCSLAVLDSSLS---ELFRSQ-AHRDFVRDATWSPLNHSLLTTVG  319 (344)
T ss_dssp             SSCCEEEEETTSCEEEECTTCC---EEEEEC-CCSSCEEEEEECSSSTTEEEEEE
T ss_pred             CCeEEEEEeCCCeEEEEECCCC---cEEEEc-CCCCCEEEEEEeCCCCeEEEEEc
Confidence            8645555566788999986543   211111 2223456788988886 555443

>1erj_A Transcriptional repressor TUP1; beta-propeller, transcription inhibitor; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1

Probab=98.66  E-value=1.5e-05  Score=65.85  Aligned_cols=148  Identities=16%  Similarity=0.069  Sum_probs=92.6

Q ss_pred             ccEEEcCCCcE-EEEeCCCcEEEEcc-CCceeEecccCCccccceEEccCCCEEEEEeCCCcEEEEe-cCC-cEEEEecc
Q 026118           13 EDVSVDGNGVL-YTATGDGWIKRMHP-NGTWEDWHQVGSQSLLGLTTTKENNVIIVCDSQQGLLKVS-EEG-VTVLVSQF   88 (243)
Q Consensus        13 ~~i~~d~~g~l-~~~~~~~~i~~~~~-~g~~~~~~~~~~~~~~~i~~~~~g~l~~v~~~~~gl~~~~-~~g-~~~~~~~~   88 (243)
                      .++++.++|.+ ..+..++.|..++. +++..........+..++++++++++|+.+..+..+..++ .++ ...... .
T Consensus       127 ~~v~~s~dg~~l~s~~~d~~i~iwd~~~~~~~~~~~~h~~~v~~~~~~p~~~~l~s~s~d~~v~iwd~~~~~~~~~~~-~  205 (393)
T 1erj_A          127 RSVCFSPDGKFLATGAEDRLIRIWDIENRKIVMILQGHEQDIYSLDYFPSGDKLVSGSGDRTVRIWDLRTGQCSLTLS-I  205 (393)
T ss_dssp             EEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEEEEE-C
T ss_pred             EEEEECCCCCEEEEEcCCCeEEEEECCCCcEEEEEccCCCCEEEEEEcCCCCEEEEecCCCcEEEEECCCCeeEEEEE-c
Confidence            47888998864 45568889999994 4543332221122333899999999856666555577777 666 322221 1


Q ss_pred             CCCcccCCccEEEcC-CCcEEEEeCCCCCCcccccccccccCCCceEEEEeCCCCeeEEee--------ccccccceEEE
Q 026118           89 NGSQLRFANDVIEAS-DGSLYFTVSSTKFTPAEYYLDLVSGEPHGVLLKYDPSTNQTSLVL--------DGLYFANGVAL  159 (243)
Q Consensus        89 ~~~~~~~~~~l~~d~-~G~l~v~~~~~~~~~~~~~~~~~~~~~~g~v~~~~~~~~~~~~~~--------~~~~~~~gi~~  159 (243)
                          ...+..+++.+ +|+++++.+                 ..+.|..+|..+++.....        ........++|
T Consensus       206 ----~~~v~~~~~~~~~~~~l~~~s-----------------~d~~v~iwd~~~~~~~~~~~~~~~~~~~h~~~v~~v~~  264 (393)
T 1erj_A          206 ----EDGVTTVAVSPGDGKYIAAGS-----------------LDRAVRVWDSETGFLVERLDSENESGTGHKDSVYSVVF  264 (393)
T ss_dssp             ----SSCEEEEEECSTTCCEEEEEE-----------------TTSCEEEEETTTCCEEEEEC------CCCSSCEEEEEE
T ss_pred             ----CCCcEEEEEECCCCCEEEEEc-----------------CCCcEEEEECCCCcEEEeecccccCCCCCCCCEEEEEE
Confidence                12455778888 788777632                 2356777888766543322        11234568999


Q ss_pred             cCCCCEEEEEEcCCCeEEEEEeec
Q 026118          160 SEDERFLVVCESWKFRCVKHFLKV  183 (243)
Q Consensus       160 ~~dg~~l~v~~~~~~~i~~~~~~~  183 (243)
                      +++|++|+.+ ..++.|..+++..
T Consensus       265 ~~~g~~l~s~-s~d~~v~~wd~~~  287 (393)
T 1erj_A          265 TRDGQSVVSG-SLDRSVKLWNLQN  287 (393)
T ss_dssp             CTTSSEEEEE-ETTSEEEEEEC--
T ss_pred             CCCCCEEEEE-eCCCEEEEEECCC
Confidence            9999966544 5678899998764

>2aq5_A Coronin-1A; WD40 repeat, 7-bladed beta-propeller, structural protein; HET: CME; 1.75A {Mus musculus} PDB: 2b4e_A

Probab=98.65  E-value=2.1e-05  Score=64.92  Aligned_cols=184  Identities=10%  Similarity=-0.026  Sum_probs=110.4

Q ss_pred             CcccEEEcC-CCcEE-EEeCCCcEEEEc-cCCc--------eeEecccCCccccceEEccCC-CEEEEEeCCCcEEEEe-
Q 026118           11 HPEDVSVDG-NGVLY-TATGDGWIKRMH-PNGT--------WEDWHQVGSQSLLGLTTTKEN-NVIIVCDSQQGLLKVS-   77 (243)
Q Consensus        11 ~p~~i~~d~-~g~l~-~~~~~~~i~~~~-~~g~--------~~~~~~~~~~~~~~i~~~~~g-~l~~v~~~~~gl~~~~-   77 (243)
                      ...++++.+ ++.++ ++..++.|..++ ..+.        ...+........ .+++++++ ++++.+..++.|..++ 
T Consensus        83 ~V~~~~~~p~~~~~l~s~s~dg~v~vw~~~~~~~~~~~~~~~~~~~~h~~~v~-~~~~~p~~~~~l~s~~~dg~i~iwd~  161 (402)
T 2aq5_A           83 PVLDIAWCPHNDNVIASGSEDCTVMVWEIPDGGLVLPLREPVITLEGHTKRVG-IVAWHPTAQNVLLSAGCDNVILVWDV  161 (402)
T ss_dssp             CEEEEEECTTCTTEEEEEETTSEEEEEECCTTCCSSCBCSCSEEEECCSSCEE-EEEECSSBTTEEEEEETTSCEEEEET
T ss_pred             CEEEEEeCCCCCCEEEEEeCCCeEEEEEccCCCCccccCCceEEecCCCCeEE-EEEECcCCCCEEEEEcCCCEEEEEEC
Confidence            345688888 77644 555888899998 3332        222222223334 89999998 5756666556688888 


Q ss_pred             cCC-cEEEEeccCCCcccCCccEEEcCCCcEEEEeCCCCCCcccccccccccCCCceEEEEeCCCCeeEEee-ccc--cc
Q 026118           78 EEG-VTVLVSQFNGSQLRFANDVIEASDGSLYFTVSSTKFTPAEYYLDLVSGEPHGVLLKYDPSTNQTSLVL-DGL--YF  153 (243)
Q Consensus        78 ~~g-~~~~~~~~~~~~~~~~~~l~~d~~G~l~v~~~~~~~~~~~~~~~~~~~~~~g~v~~~~~~~~~~~~~~-~~~--~~  153 (243)
                      .++ ...... .. .....+.+++++++|+++++.+                 ..+.|..+|..+++..... ...  ..
T Consensus       162 ~~~~~~~~~~-~~-~~~~~v~~~~~~~~~~~l~~~~-----------------~d~~i~iwd~~~~~~~~~~~~~~~~~~  222 (402)
T 2aq5_A          162 GTGAAVLTLG-PD-VHPDTIYSVDWSRDGALICTSC-----------------RDKRVRVIEPRKGTVVAEKDRPHEGTR  222 (402)
T ss_dssp             TTTEEEEEEC-TT-TCCSCEEEEEECTTSSCEEEEE-----------------TTSEEEEEETTTTEEEEEEECSSCSSS
T ss_pred             CCCCccEEEe-cC-CCCCceEEEEECCCCCEEEEEe-----------------cCCcEEEEeCCCCceeeeeccCCCCCc
Confidence            666 222110 01 1124567889999998666532                 2467888998877655433 222  23


Q ss_pred             cceEEEcCCCCEEEEEE--cCCCeEEEEEeecCCCcceEEeccCCCCCCCceEECCCCCEE-EEE
Q 026118          154 ANGVALSEDERFLVVCE--SWKFRCVKHFLKVSGRTDREIFIDNLPGGPDNVNLARDGSFW-ISI  215 (243)
Q Consensus       154 ~~gi~~~~dg~~l~v~~--~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~i~~d~~G~lw-v~~  215 (243)
                      +..++++++++.|+++.  ..++.|..|+........ .............++++++|++. ++.
T Consensus       223 ~~~~~~~~~~~~l~~g~~~~~d~~i~iwd~~~~~~~~-~~~~~~~~~~v~~~~~s~~~~~l~~~g  286 (402)
T 2aq5_A          223 PVHAVFVSEGKILTTGFSRMSERQVALWDTKHLEEPL-SLQELDTSSGVLLPFFDPDTNIVYLCG  286 (402)
T ss_dssp             CCEEEECSTTEEEEEEECTTCCEEEEEEETTBCSSCS-EEEECCCCSSCEEEEEETTTTEEEEEE
T ss_pred             ceEEEEcCCCcEEEEeccCCCCceEEEEcCccccCCc-eEEeccCCCceeEEEEcCCCCEEEEEE
Confidence            67899999998555442  456889999986532211 11111122335567888888744 444

>2pbi_B Guanine nucleotide-binding protein subunit beta 5; helix WRAP, RGS domain, DEP domain, DHEX domain, GGL domain, propeller, signaling protein; 1.95A {Mus musculus}

Probab=98.63  E-value=2.5e-05  Score=63.61  Aligned_cols=179  Identities=16%  Similarity=0.159  Sum_probs=108.8

Q ss_pred             ccEEEcCCC-cEEEEeCCCcEEEEc-cCCcee-EecccCCccccceEEcc--CCCEEEEEeCCCcEEEEe-cCC-cEEEE
Q 026118           13 EDVSVDGNG-VLYTATGDGWIKRMH-PNGTWE-DWHQVGSQSLLGLTTTK--ENNVIIVCDSQQGLLKVS-EEG-VTVLV   85 (243)
Q Consensus        13 ~~i~~d~~g-~l~~~~~~~~i~~~~-~~g~~~-~~~~~~~~~~~~i~~~~--~g~l~~v~~~~~gl~~~~-~~g-~~~~~   85 (243)
                      .++++.+++ .|..+..++.|..++ ..++.. .+........ .+.+.+  +|++++.+..++.+..+| .++ .....
T Consensus       158 ~~~~~~~~~~~l~t~s~D~~v~lwd~~~~~~~~~~~~h~~~v~-~~~~~~~~~g~~l~sgs~Dg~v~~wd~~~~~~~~~~  236 (354)
T 2pbi_B          158 SACSFTNSDMQILTASGDGTCALWDVESGQLLQSFHGHGADVL-CLDLAPSETGNTFVSGGCDKKAMVWDMRSGQCVQAF  236 (354)
T ss_dssp             EEEEECSSSSEEEEEETTSEEEEEETTTCCEEEEEECCSSCEE-EEEECCCSSCCEEEEEETTSCEEEEETTTCCEEEEE
T ss_pred             EEEEEeCCCCEEEEEeCCCcEEEEeCCCCeEEEEEcCCCCCeE-EEEEEeCCCCCEEEEEeCCCeEEEEECCCCcEEEEe
Confidence            457777777 466677889999998 455533 3322222223 566654  677757776666688888 666 32221


Q ss_pred             eccCCCcccCCccEEEcCCCcEEEEeCCCCCCcccccccccccCCCceEEEEeCCCCeeEEeecc---ccccceEEEcCC
Q 026118           86 SQFNGSQLRFANDVIEASDGSLYFTVSSTKFTPAEYYLDLVSGEPHGVLLKYDPSTNQTSLVLDG---LYFANGVALSED  162 (243)
Q Consensus        86 ~~~~~~~~~~~~~l~~d~~G~l~v~~~~~~~~~~~~~~~~~~~~~~g~v~~~~~~~~~~~~~~~~---~~~~~gi~~~~d  162 (243)
                      .   + ....+.++++.|+|+++++.+                 ..+.|..+|..+++.......   ......++|+++
T Consensus       237 ~---~-h~~~v~~v~~~p~~~~l~s~s-----------------~D~~v~lwd~~~~~~~~~~~~~~~~~~~~~~~~s~~  295 (354)
T 2pbi_B          237 E---T-HESDVNSVRYYPSGDAFASGS-----------------DDATCRLYDLRADREVAIYSKESIIFGASSVDFSLS  295 (354)
T ss_dssp             C---C-CSSCEEEEEECTTSSEEEEEE-----------------TTSCEEEEETTTTEEEEEECCTTCCSCEEEEEECTT
T ss_pred             c---C-CCCCeEEEEEeCCCCEEEEEe-----------------CCCeEEEEECCCCcEEEEEcCCCcccceeEEEEeCC
Confidence            1   1 123567889999998777632                 235677778765544333221   123467999999


Q ss_pred             CCEEEEEEcCCCeEEEEEeecCCCcceEEeccCCCCCCCceEECCCCCEEEEEec
Q 026118          163 ERFLVVCESWKFRCVKHFLKVSGRTDREIFIDNLPGGPDNVNLARDGSFWISIIK  217 (243)
Q Consensus       163 g~~l~v~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~i~~d~~G~lwv~~~~  217 (243)
                      |++|+.+ ..++.|..|+.....  ....+. .-.+....+++.++|++.++...
T Consensus       296 g~~l~~g-~~d~~i~vwd~~~~~--~~~~l~-~h~~~v~~l~~spdg~~l~sgs~  346 (354)
T 2pbi_B          296 GRLLFAG-YNDYTINVWDVLKGS--RVSILF-GHENRVSTLRVSPDGTAFCSGSW  346 (354)
T ss_dssp             SSEEEEE-ETTSCEEEEETTTCS--EEEEEC-CCSSCEEEEEECTTSSCEEEEET
T ss_pred             CCEEEEE-ECCCcEEEEECCCCc--eEEEEE-CCCCcEEEEEECCCCCEEEEEcC
Confidence            9966555 467889999975421  122222 22334567899999986555443

>2vdu_B TRNA (guanine-N(7)-)-methyltransferase- associated WD repeat protein TRM82; S-adenosyl-L-methionine, tRNA processing, phosphorylation, M7G, spout MT, WD repeat; 2.40A {Saccharomyces cerevisiae}

Probab=98.63  E-value=1.1e-05  Score=67.83  Aligned_cols=181  Identities=13%  Similarity=0.128  Sum_probs=113.1

Q ss_pred             CcccEEEcCCCc-EEEEeCCCcEEEEc-cCCcee-----EecccCCccccceEEccC---CCEEEEEeCCCcEEEEe-cC
Q 026118           11 HPEDVSVDGNGV-LYTATGDGWIKRMH-PNGTWE-----DWHQVGSQSLLGLTTTKE---NNVIIVCDSQQGLLKVS-EE   79 (243)
Q Consensus        11 ~p~~i~~d~~g~-l~~~~~~~~i~~~~-~~g~~~-----~~~~~~~~~~~~i~~~~~---g~l~~v~~~~~gl~~~~-~~   79 (243)
                      .+.+++++++|. |+++..++.|+.++ .+++..     .+........ +++++++   +++++.+..+..|..++ .+
T Consensus       151 ~v~~~~~sp~~~~l~~~~~~g~v~~~~~~~~~~~~~~~~~~~~h~~~v~-~~~~sp~~~~~~~l~s~~~d~~i~vwd~~~  229 (450)
T 2vdu_B          151 RPNAISIAEDDTTVIIADKFGDVYSIDINSIPEEKFTQEPILGHVSMLT-DVHLIKDSDGHQFIITSDRDEHIKISHYPQ  229 (450)
T ss_dssp             CEEEEEECTTSSEEEEEETTSEEEEEETTSCCCSSCCCCCSEECSSCEE-EEEEEECTTSCEEEEEEETTSCEEEEEESC
T ss_pred             CceEEEEcCCCCEEEEEeCCCcEEEEecCCcccccccceeeecccCceE-EEEEcCCCCCCcEEEEEcCCCcEEEEECCC
Confidence            456899999885 66777888899988 333322     1111122334 8899999   88757776666688888 66


Q ss_pred             C-cE-EEEeccCCCcccCCccEEEcCCCcEEEEeCCCCCCcccccccccccCCCceEEEEeCCCCeeEEeecc-------
Q 026118           80 G-VT-VLVSQFNGSQLRFANDVIEASDGSLYFTVSSTKFTPAEYYLDLVSGEPHGVLLKYDPSTNQTSLVLDG-------  150 (243)
Q Consensus        80 g-~~-~~~~~~~~~~~~~~~~l~~d~~G~l~v~~~~~~~~~~~~~~~~~~~~~~g~v~~~~~~~~~~~~~~~~-------  150 (243)
                      + .. .+..   + ....+.++++. +|+++++.+                 ..+.|..+|..+++.......       
T Consensus       230 ~~~~~~~~~---~-h~~~v~~~~~s-d~~~l~s~~-----------------~d~~v~vwd~~~~~~~~~~~~~~~~~~~  287 (450)
T 2vdu_B          230 CFIVDKWLF---G-HKHFVSSICCG-KDYLLLSAG-----------------GDDKIFAWDWKTGKNLSTFDYNSLIKPY  287 (450)
T ss_dssp             TTCEEEECC---C-CSSCEEEEEEC-STTEEEEEE-----------------SSSEEEEEETTTCCEEEEEECHHHHGGG
T ss_pred             Cceeeeeec---C-CCCceEEEEEC-CCCEEEEEe-----------------CCCeEEEEECCCCcEeeeecchhhhhhh
Confidence            6 32 2221   1 12456788999 888777632                 245788888887764432210       


Q ss_pred             -------------------ccccceEEEcCCCCEEEEEEcCCCeEEEEEe--ec-CCCcceEEeccCCCCCCCceEECCC
Q 026118          151 -------------------LYFANGVALSEDERFLVVCESWKFRCVKHFL--KV-SGRTDREIFIDNLPGGPDNVNLARD  208 (243)
Q Consensus       151 -------------------~~~~~gi~~~~dg~~l~v~~~~~~~i~~~~~--~~-~~~~~~~~~~~~~~~~~~~i~~d~~  208 (243)
                                         .....++++++++++|+++...++.|..|++  .. ..+.....+.  ..+.+..++++++
T Consensus       288 ~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~~~d~~i~iw~~~~~~~~~l~~~~~~~--~~~~v~~~~~~~~  365 (450)
T 2vdu_B          288 LNDQHLAPPRFQNENNDIIEFAVSKIIKSKNLPFVAFFVEATKCIIILEMSEKQKGDLALKQIIT--FPYNVISLSAHND  365 (450)
T ss_dssp             CCTTSBC----------CBCCCEEEEEECSSSSEEEEEETTCSEEEEEEECSSSTTCEEEEEEEE--CSSCEEEEEEETT
T ss_pred             hhhcccccccccccccccceEEEEEEEEeCCCCEEEEEECCCCeEEEEEeccCCCCceeeccEec--cCCceEEEEecCC
Confidence                               1234579999999988888757789999998  32 1222222222  1245667888774


Q ss_pred             CCEEEEEec
Q 026118          209 GSFWISIIK  217 (243)
Q Consensus       209 G~lwv~~~~  217 (243)
                       .++++...
T Consensus       366 -~~~v~~~~  373 (450)
T 2vdu_B          366 -EFQVTLDN  373 (450)
T ss_dssp             -EEEEEECC
T ss_pred             -cEEEEEec
Confidence             46666543

>1nr0_A Actin interacting protein 1; beta propeller, WD40 repeat, ADF, cofilin, structural genomics, PSI, protein structure initiative; 1.70A {Caenorhabditis elegans} SCOP: b.69.4.1 b.69.4.1 PDB: 1pev_A

Probab=98.63  E-value=3.6e-06  Score=73.76  Aligned_cols=188  Identities=11%  Similarity=-0.022  Sum_probs=108.4

Q ss_pred             CCcccEEEcCCCcEEEEeCCCcEEEEcc-CCcee-EecccCCccccceEEccCCCEEEEEeCCCcEEEEe-cCC-cEEEE
Q 026118           10 NHPEDVSVDGNGVLYTATGDGWIKRMHP-NGTWE-DWHQVGSQSLLGLTTTKENNVIIVCDSQQGLLKVS-EEG-VTVLV   85 (243)
Q Consensus        10 ~~p~~i~~d~~g~l~~~~~~~~i~~~~~-~g~~~-~~~~~~~~~~~~i~~~~~g~l~~v~~~~~gl~~~~-~~g-~~~~~   85 (243)
                      ..|..++++|+|++.+...++.|+.++. +++.. .+........ .++++|+|+++..+..++.+..+| .++ .....
T Consensus        19 g~~~~~~~spdg~~l~~~~~~~v~l~~~~~~~~~~~~~~h~~~v~-~~~~spdg~~lasg~~d~~v~lWd~~~~~~~~~~   97 (611)
T 1nr0_A           19 GTAVVLGNTPAGDKIQYCNGTSVYTVPVGSLTDTEIYTEHSHQTT-VAKTSPSGYYCASGDVHGNVRIWDTTQTTHILKT   97 (611)
T ss_dssp             TCCCCCEECTTSSEEEEEETTEEEEEETTCSSCCEEECCCSSCEE-EEEECTTSSEEEEEETTSEEEEEESSSTTCCEEE
T ss_pred             CceeEEeeCCCCCEEEeCCCCEEEEecCCCcccCeEecCCCCceE-EEEECCCCcEEEEEeCCCCEEEeECCCCcceeeE
Confidence            3577899999997554444567888873 44433 3322222334 899999999855555544566667 443 21111


Q ss_pred             eccCCCcccCCccEEEcCCCcEEEEeCCCCCCcccccccccccCCCceEEEEeCCCCeeEEeeccccccceEEEcCCCCE
Q 026118           86 SQFNGSQLRFANDVIEASDGSLYFTVSSTKFTPAEYYLDLVSGEPHGVLLKYDPSTNQTSLVLDGLYFANGVALSEDERF  165 (243)
Q Consensus        86 ~~~~~~~~~~~~~l~~d~~G~l~v~~~~~~~~~~~~~~~~~~~~~~g~v~~~~~~~~~~~~~~~~~~~~~gi~~~~dg~~  165 (243)
                      . ..+ ....+.+++++|+|+..++....             ....+.|+.+|.. .....+.......+.++|+|++..
T Consensus        98 ~-~~~-~~~~v~~v~fs~dg~~l~~~~~~-------------~~~~~~v~~wd~~-~~~~~l~gh~~~v~~v~f~p~~~~  161 (611)
T 1nr0_A           98 T-IPV-FSGPVKDISWDSESKRIAAVGEG-------------RERFGHVFLFDTG-TSNGNLTGQARAMNSVDFKPSRPF  161 (611)
T ss_dssp             E-EEC-SSSCEEEEEECTTSCEEEEEECC-------------SSCSEEEEETTTC-CBCBCCCCCSSCEEEEEECSSSSC
T ss_pred             e-ecc-cCCceEEEEECCCCCEEEEEECC-------------CCceeEEEEeeCC-CCcceecCCCCCceEEEECCCCCe
Confidence            1 111 12356789999999877653210             0112456666642 222222333345678999999875


Q ss_pred             EEEEEcCCCeEEEEEeecCCCcceEEeccCCCCCCCceEECCCCCEEEEEec
Q 026118          166 LVVCESWKFRCVKHFLKVSGRTDREIFIDNLPGGPDNVNLARDGSFWISIIK  217 (243)
Q Consensus       166 l~v~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~i~~d~~G~lwv~~~~  217 (243)
                      .+++...++.|..++....  .....+. .-......+++.++|++.++...
T Consensus       162 ~l~s~s~D~~v~lwd~~~~--~~~~~l~-~H~~~V~~v~fspdg~~las~s~  210 (611)
T 1nr0_A          162 RIISGSDDNTVAIFEGPPF--KFKSTFG-EHTKFVHSVRYNPDGSLFASTGG  210 (611)
T ss_dssp             EEEEEETTSCEEEEETTTB--EEEEEEC-CCSSCEEEEEECTTSSEEEEEET
T ss_pred             EEEEEeCCCeEEEEECCCC--eEeeeec-cccCceEEEEECCCCCEEEEEEC
Confidence            5666667788988885431  1112221 22234566888899886665443

>2z3z_A Dipeptidyl aminopeptidase IV; peptidase family S9, prolyl oligopeptidase family, serine PR proline-specific peptidase, hydrolase; HET: AIO; 1.95A {Porphyromonas gingivalis} PDB: 2z3w_A* 2d5l_A 2eep_A* 2dcm_A*

Probab=98.62  E-value=5e-06  Score=73.84  Aligned_cols=171  Identities=12%  Similarity=0.053  Sum_probs=98.9

Q ss_pred             CCcccEEEcCCCcEEEEeCCCcEEEEcc-CCceeEecccCCccccceEEccCCCEEEEEeCCCcEEEEe-cC-----C-c
Q 026118           10 NHPEDVSVDGNGVLYTATGDGWIKRMHP-NGTWEDWHQVGSQSLLGLTTTKENNVIIVCDSQQGLLKVS-EE-----G-V   81 (243)
Q Consensus        10 ~~p~~i~~d~~g~l~~~~~~~~i~~~~~-~g~~~~~~~~~~~~~~~i~~~~~g~l~~v~~~~~gl~~~~-~~-----g-~   81 (243)
                      ..+.++++.+++.+.++ .++.|+.++. +++............ .++++|||+.+.++ ....|+.++ .+     + .
T Consensus        82 ~~v~~~~~spd~~~~~~-~~~~i~~~d~~~~~~~~l~~~~~~~~-~~~~SpdG~~la~~-~~~~i~v~~~~~~~~~~g~~  158 (706)
T 2z3z_A           82 FPSFRTLDAGRGLVVLF-TQGGLVGFDMLARKVTYLFDTNEETA-SLDFSPVGDRVAYV-RNHNLYIARGGKLGEGMSRA  158 (706)
T ss_dssp             CCCEEEEETTTTEEEEE-ETTEEEEEETTTTEEEEEECCTTCCT-TCEECTTSSEEEEE-ETTEEEEEECBCTTSCCCCC
T ss_pred             cCceeEEECCCCeEEEE-ECCEEEEEECCCCceEEccCCccccc-CCcCCCCCCEEEEE-ECCeEEEEecCcccccCCCc
Confidence            35778999988666555 4488999984 555544433223345 88999999874444 356788888 66     6 4


Q ss_pred             EEEEeccCCC----------cccCCccEEEcCCCcEEEEeCCCCCCccccc-------------ccc---cccCCCceEE
Q 026118           82 TVLVSQFNGS----------QLRFANDVIEASDGSLYFTVSSTKFTPAEYY-------------LDL---VSGEPHGVLL  135 (243)
Q Consensus        82 ~~~~~~~~~~----------~~~~~~~l~~d~~G~l~v~~~~~~~~~~~~~-------------~~~---~~~~~~g~v~  135 (243)
                      ..+.......          ....+.+++++|||+..+..+...-....+.             ...   ........|+
T Consensus       159 ~~~~~~~~~~~~~g~~~~~ee~~~~~~~~~SpDg~~la~~~~d~~~~~~~~~~~~~~~~~~~~~~~y~~~g~~~~~~~l~  238 (706)
T 2z3z_A          159 IAVTIDGTETLVYGQAVHQREFGIEKGTFWSPKGSCLAFYRMDQSMVKPTPIVDYHPLEAESKPLYYPMAGTPSHHVTVG  238 (706)
T ss_dssp             EESCSCCBTTEEESSCCGGGCTTCCCSEEECTTSSEEEEEEEECTTSCCEEEEECCSSSCEEEEECCCBTTSCCCEEEEE
T ss_pred             EEeccCCCCCeEcccchhhhhcCCCceEEECCCCCEEEEEEECCCCCceEEeeccCCCCCceEEeeCCCCCCCCCeeEEE
Confidence            4322111110          0112468899999984443210000000000             000   0011335799


Q ss_pred             EEeCCCCeeEEeecc---ccccceEEEcCCCCEEEEEEcCC----CeEEEEEeec
Q 026118          136 KYDPSTNQTSLVLDG---LYFANGVALSEDERFLVVCESWK----FRCVKHFLKV  183 (243)
Q Consensus       136 ~~~~~~~~~~~~~~~---~~~~~gi~~~~dg~~l~v~~~~~----~~i~~~~~~~  183 (243)
                      .+|.++++.+.+...   ...+..++|+|||+.|+++....    ..|+.++..+
T Consensus       239 ~~d~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~v~~~d~~~  293 (706)
T 2z3z_A          239 IYHLATGKTVYLQTGEPKEKFLTNLSWSPDENILYVAEVNRAQNECKVNAYDAET  293 (706)
T ss_dssp             EEETTTTEEEECCCCSCTTCEEEEEEECTTSSEEEEEEECTTSCEEEEEEEETTT
T ss_pred             EEECCCCceEeeccCCCCceeEeeEEEECCCCEEEEEEeCCCCCeeEEEEEECCC
Confidence            999998887665422   23456799999999888865432    3788888765

>2pm9_A Protein WEB1, protein transport protein SEC31; beta propeller; 3.30A {Saccharomyces cerevisiae}

Probab=98.61  E-value=3.7e-06  Score=69.35  Aligned_cols=187  Identities=10%  Similarity=0.038  Sum_probs=108.1

Q ss_pred             CcccEEEcCCCc-EEEEeCCCcEEEEccCC------ceeEecccCCccccceEEccC-CCEEEEEeCCCcEEEEe-cCCc
Q 026118           11 HPEDVSVDGNGV-LYTATGDGWIKRMHPNG------TWEDWHQVGSQSLLGLTTTKE-NNVIIVCDSQQGLLKVS-EEGV   81 (243)
Q Consensus        11 ~p~~i~~d~~g~-l~~~~~~~~i~~~~~~g------~~~~~~~~~~~~~~~i~~~~~-g~l~~v~~~~~gl~~~~-~~g~   81 (243)
                      ...++++.+++. |.++..++.|..++...      ....+........ .++++++ +++++.+...+.|..++ .++.
T Consensus        69 ~v~~~~~s~~~~~l~~~~~dg~v~vw~~~~~~~~~~~~~~~~~h~~~v~-~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~  147 (416)
T 2pm9_A           69 KFNDLDWSHNNKIIAGALDNGSLELYSTNEANNAINSMARFSNHSSSVK-TVKFNAKQDNVLASGGNNGEIFIWDMNKCT  147 (416)
T ss_dssp             CEEEEEECSSSSCEEEEESSSCEEEECCSSTTSCCCEEEECCCSSSCCC-EEEECSSSTTBEEEECSSSCEEBCBTTTTS
T ss_pred             ceEEEEECCCCCeEEEEccCCeEEEeecccccccccchhhccCCccceE-EEEEcCCCCCEEEEEcCCCeEEEEECCCCc
Confidence            345788888885 55666888999998332      2222222222334 8999998 77746665545577777 4332


Q ss_pred             ------EEEEeccCCCcccCCccEEEcCC-CcEEEEeCCCCCCcccccccccccCCCceEEEEeCCCCeeEEeecc----
Q 026118           82 ------TVLVSQFNGSQLRFANDVIEASD-GSLYFTVSSTKFTPAEYYLDLVSGEPHGVLLKYDPSTNQTSLVLDG----  150 (243)
Q Consensus        82 ------~~~~~~~~~~~~~~~~~l~~d~~-G~l~v~~~~~~~~~~~~~~~~~~~~~~g~v~~~~~~~~~~~~~~~~----  150 (243)
                            ..+...........+.++++.++ +.++++..                 ..+.|..+|..+++.......    
T Consensus       148 ~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~-----------------~dg~v~iwd~~~~~~~~~~~~~~~~  210 (416)
T 2pm9_A          148 ESPSNYTPLTPGQSMSSVDEVISLAWNQSLAHVFASAG-----------------SSNFASIWDLKAKKEVIHLSYTSPN  210 (416)
T ss_dssp             SCTTTCCCBCCCCSCCSSCCCCEEEECSSCTTEEEEES-----------------SSSCEEEEETTTTEEEEEECCCCCS
T ss_pred             cccccccccccccccCCCCCeeEEEeCCCCCcEEEEEc-----------------CCCCEEEEECCCCCcceEEeccccc
Confidence                  22111011112245678999998 67776632                 245788889887765544332    


Q ss_pred             ---ccccceEEEcCCCCEEEEEEcCCC---eEEEEEeecCCCcceEEeccCCCCCCCceEECC-CCCEEEEEe
Q 026118          151 ---LYFANGVALSEDERFLVVCESWKF---RCVKHFLKVSGRTDREIFIDNLPGGPDNVNLAR-DGSFWISII  216 (243)
Q Consensus       151 ---~~~~~gi~~~~dg~~l~v~~~~~~---~i~~~~~~~~~~~~~~~~~~~~~~~~~~i~~d~-~G~lwv~~~  216 (243)
                         ......++++|++..++++...++   .|..|+....... ...+..........+++++ ++++.++..
T Consensus       211 ~~~~~~v~~~~~~~~~~~~l~~~~~d~~~~~i~~~d~~~~~~~-~~~~~~~~~~~v~~~~~s~~~~~~l~s~~  282 (416)
T 2pm9_A          211 SGIKQQLSVVEWHPKNSTRVATATGSDNDPSILIWDLRNANTP-LQTLNQGHQKGILSLDWCHQDEHLLLSSG  282 (416)
T ss_dssp             SCCCCCEEEEEECSSCTTEEEEEECCSSSCCCCEEETTSTTSC-SBCCCSCCSSCEEEEEECSSCSSCEEEEE
T ss_pred             cccCCceEEEEECCCCCCEEEEEECCCCCceEEEEeCCCCCCC-cEEeecCccCceeEEEeCCCCCCeEEEEe
Confidence               345678999999853555545555   8988987653111 1111101122345678877 676444443

>4g56_B MGC81050 protein; protein arginine methyltransferase, protein complexes, histo methylation, transferase; HET: SAH; 2.95A {Xenopus laevis}

Probab=98.60  E-value=1.4e-06  Score=71.24  Aligned_cols=181  Identities=14%  Similarity=0.040  Sum_probs=101.5

Q ss_pred             ccEEEcCCCcEEEEe-C------CCcEEEEc-cCCceeE-----ecccCCccccceEEccCCCEEEEEeCCCcEEEEe-c
Q 026118           13 EDVSVDGNGVLYTAT-G------DGWIKRMH-PNGTWED-----WHQVGSQSLLGLTTTKENNVIIVCDSQQGLLKVS-E   78 (243)
Q Consensus        13 ~~i~~d~~g~l~~~~-~------~~~i~~~~-~~g~~~~-----~~~~~~~~~~~i~~~~~g~l~~v~~~~~gl~~~~-~   78 (243)
                      .++++.|||.+.++. .      ++.|..++ +.+....     ......... .+++.+++++ +++...+.|..++ .
T Consensus        46 ~~v~fSpDG~~las~s~d~~~~wd~~v~~~~~~~~~~~~~~~~~~~~~~~~V~-~~~~s~d~~~-l~~s~dg~v~lWd~~  123 (357)
T 4g56_B           46 GAVRYRRDGALLLAASSLSSRTWGGSIWVFKDPEGAPNESLCTAGVQTEAGVT-DVAWVSEKGI-LVASDSGAVELWEIL  123 (357)
T ss_dssp             EEEEECSSSCEEEEEECSSSSSCCEEEEEESSCC---CGGGCSEEEECSSCEE-EEEEETTTEE-EEEETTSCEEEC---
T ss_pred             EEEEECCCCCEEEEEcCCCCccccCeEEEEECCCCCcceeEecccCCCCCCEE-EEEEcCCCCE-EEEECCCEEEEeecc
Confidence            568999999876654 3      56677776 3332111     001112234 7899999988 6666555566666 4


Q ss_pred             CC-cEEEEeccCCCcccCCccEEEcCCCcEEEEeCCCCCCcccccccccccCCCceEEEEeCCCCeeEEeec-cccccce
Q 026118           79 EG-VTVLVSQFNGSQLRFANDVIEASDGSLYFTVSSTKFTPAEYYLDLVSGEPHGVLLKYDPSTNQTSLVLD-GLYFANG  156 (243)
Q Consensus        79 ~g-~~~~~~~~~~~~~~~~~~l~~d~~G~l~v~~~~~~~~~~~~~~~~~~~~~~g~v~~~~~~~~~~~~~~~-~~~~~~g  156 (243)
                      ++ ...............+.++++.|+|++.++.+                 ..+.|..+|..+++...... .....+.
T Consensus       124 ~~~~~~~~~~~~~~h~~~V~~v~~spdg~~l~sgs-----------------~dg~v~iwd~~~~~~~~~~~~h~~~v~~  186 (357)
T 4g56_B          124 EKESLLVNKFAKYEHDDIVKTLSVFSDGTQAVSGG-----------------KDFSVKVWDLSQKAVLKSYNAHSSEVNC  186 (357)
T ss_dssp             -----CCCCEEECCCSSCEEEEEECSSSSEEEEEE-----------------TTSCEEEEETTTTEEEEEECCCSSCEEE
T ss_pred             ccceeEEEeeccCCCCCCEEEEEECCCCCEEEEEe-----------------CCCeEEEEECCCCcEEEEEcCCCCCEEE
Confidence            44 21111100001123567899999998777632                 23568888988777655433 3345678


Q ss_pred             EEEcCCCCEEEEEEcCCCeEEEEEeecCCCcceEEeccCCCCCCCceEECCCC-CEEE
Q 026118          157 VALSEDERFLVVCESWKFRCVKHFLKVSGRTDREIFIDNLPGGPDNVNLARDG-SFWI  213 (243)
Q Consensus       157 i~~~~dg~~l~v~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~i~~d~~G-~lwv  213 (243)
                      ++++++++.++++...++.|..+|...........+ ......+..+++.+++ ++.+
T Consensus       187 v~~s~~~~~~~~s~~~dg~v~~wd~~~~~~~~~~~~-~~~~~~v~~v~~sp~~~~~la  243 (357)
T 4g56_B          187 VAACPGKDTIFLSCGEDGRILLWDTRKPKPATRIDF-CASDTIPTSVTWHPEKDDTFA  243 (357)
T ss_dssp             EEECTTCSSCEEEEETTSCEEECCTTSSSCBCBCCC-TTCCSCEEEEEECTTSTTEEE
T ss_pred             EEEccCCCceeeeeccCCceEEEECCCCceeeeeee-ccccccccchhhhhcccceEE
Confidence            999998875666666778899888764322111111 1112234557777664 4444

>4h5i_A Guanine nucleotide-exchange factor SEC12; copii vesicle budding, potassium binding site, beta propelle protein transport; 1.36A {Saccharomyces cerevisiae} PDB: 4h5j_A

Probab=98.60  E-value=4.7e-06  Score=68.30  Aligned_cols=153  Identities=17%  Similarity=0.146  Sum_probs=95.1

Q ss_pred             CcccEEEcCCCcEEEEeCCCcEEEEc-cCCceeEecc--cCCccccceEEccCCCEEEEEeCCC--c--EEEEe-cCC-c
Q 026118           11 HPEDVSVDGNGVLYTATGDGWIKRMH-PNGTWEDWHQ--VGSQSLLGLTTTKENNVIIVCDSQQ--G--LLKVS-EEG-V   81 (243)
Q Consensus        11 ~p~~i~~d~~g~l~~~~~~~~i~~~~-~~g~~~~~~~--~~~~~~~~i~~~~~g~l~~v~~~~~--g--l~~~~-~~g-~   81 (243)
                      ...+|++.++|.+.++..++.+.+++ .+++......  ........++++++|+++..+....  +  +..++ ..+ .
T Consensus       178 ~V~~v~fspdg~~l~s~s~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~fspdg~~l~~~s~d~~~~~~i~~~~~~~~~~  257 (365)
T 4h5i_A          178 EVKDLHFSTDGKVVAYITGSSLEVISTVTGSCIARKTDFDKNWSLSKINFIADDTVLIAASLKKGKGIVLTKISIKSGNT  257 (365)
T ss_dssp             CCCEEEECTTSSEEEEECSSCEEEEETTTCCEEEEECCCCTTEEEEEEEEEETTEEEEEEEESSSCCEEEEEEEEETTEE
T ss_pred             ceEEEEEccCCceEEeccceeEEEEEeccCcceeeeecCCCCCCEEEEEEcCCCCEEEEEecCCcceeEEeeccccccee
Confidence            35678999999877666566777776 4554332211  1122333789999999855555333  2  34455 333 2


Q ss_pred             EEEEe-ccCCCcccCCccEEEcCCCcEEEEeCCCCCCcccccccccccCCCceEEEEeCCCCeeEE-eecc-ccccceEE
Q 026118           82 TVLVS-QFNGSQLRFANDVIEASDGSLYFTVSSTKFTPAEYYLDLVSGEPHGVLLKYDPSTNQTSL-VLDG-LYFANGVA  158 (243)
Q Consensus        82 ~~~~~-~~~~~~~~~~~~l~~d~~G~l~v~~~~~~~~~~~~~~~~~~~~~~g~v~~~~~~~~~~~~-~~~~-~~~~~gi~  158 (243)
                      ..... ...+ ....+.+++++|+|++.++-+                 ..+.|..+|..+++... +..+ .....+++
T Consensus       258 ~~~~~~~~~~-~~~~V~~~~~Spdg~~lasgs-----------------~D~~V~iwd~~~~~~~~~~~~gH~~~V~~v~  319 (365)
T 4h5i_A          258 SVLRSKQVTN-RFKGITSMDVDMKGELAVLAS-----------------NDNSIALVKLKDLSMSKIFKQAHSFAITEVT  319 (365)
T ss_dssp             EEEEEEEEES-SCSCEEEEEECTTSCEEEEEE-----------------TTSCEEEEETTTTEEEEEETTSSSSCEEEEE
T ss_pred             cceeeeeecC-CCCCeEeEEECCCCCceEEEc-----------------CCCEEEEEECCCCcEEEEecCcccCCEEEEE
Confidence            22111 1111 123567899999999877632                 23578888988777543 3333 34568999


Q ss_pred             EcCCCCEEEEEEcCCCeEEEEEee
Q 026118          159 LSEDERFLVVCESWKFRCVKHFLK  182 (243)
Q Consensus       159 ~~~dg~~l~v~~~~~~~i~~~~~~  182 (243)
                      |+|||+ +.++...++.|..+++.
T Consensus       320 fSpdg~-~laS~S~D~tvrvw~ip  342 (365)
T 4h5i_A          320 ISPDST-YVASVSAANTIHIIKLP  342 (365)
T ss_dssp             ECTTSC-EEEEEETTSEEEEEECC
T ss_pred             ECCCCC-EEEEEeCCCeEEEEEcC
Confidence            999999 45555678899999874

>1pgu_A Actin interacting protein 1; WD repeat, seven-bladed beta-propeller, protein binding; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1 b.69.4.1 PDB: 1pi6_A

Probab=98.59  E-value=1.2e-05  Score=69.78  Aligned_cols=195  Identities=13%  Similarity=-0.000  Sum_probs=113.0

Q ss_pred             CCcccEEEcCCCcEEEEeCCCcEEEEc-cCC-----ceeEecccCCc-cccceEEcc--CCCEEEEEeCCCcEEEEe-cC
Q 026118           10 NHPEDVSVDGNGVLYTATGDGWIKRMH-PNG-----TWEDWHQVGSQ-SLLGLTTTK--ENNVIIVCDSQQGLLKVS-EE   79 (243)
Q Consensus        10 ~~p~~i~~d~~g~l~~~~~~~~i~~~~-~~g-----~~~~~~~~~~~-~~~~i~~~~--~g~l~~v~~~~~gl~~~~-~~   79 (243)
                      ..+.+++++++|.+.+...++.|..++ .++     ....+...... .. .+++++  +|++|+++...+.+..++ .+
T Consensus        19 ~~v~~~~~spdg~~l~~~~~~~v~v~~~~~~~~~~~~~~~~~~h~~~~v~-~~~~sp~~~~~~l~s~~~dg~v~vw~~~~   97 (615)
T 1pgu_A           19 NFTTHLSYDPTTNAIAYPCGKSAFVRCLDDGDSKVPPVVQFTGHGSSVVT-TVKFSPIKGSQYLCSGDESGKVIVWGWTF   97 (615)
T ss_dssp             TCCCCCEEETTTTEEEEEETTEEEEEECCSSCCSSCSEEEECTTTTSCEE-EEEECSSTTCCEEEEEETTSEEEEEEEEE
T ss_pred             CceeEEEECCCCCEEEEecCCeEEEEECCCCCCccccceEEecCCCceEE-EEEECcCCCCCEEEEecCCCEEEEEeCCC
Confidence            356789999999755444467888888 344     33333322233 44 899999  999866666555566666 32


Q ss_pred             C------cEEEEeccCCCcccCCccEEEcCCCcEEEEeCCCCCCcccccccccccCCCceEEEEeCCCCeeEEeeccccc
Q 026118           80 G------VTVLVSQFNGSQLRFANDVIEASDGSLYFTVSSTKFTPAEYYLDLVSGEPHGVLLKYDPSTNQTSLVLDGLYF  153 (243)
Q Consensus        80 g------~~~~~~~~~~~~~~~~~~l~~d~~G~l~v~~~~~~~~~~~~~~~~~~~~~~g~v~~~~~~~~~~~~~~~~~~~  153 (243)
                      +      .......... ....+.+++++++|+..++....             ....+.|+.++.. .....+......
T Consensus        98 ~~~~~~~~~~~~~~~~~-~~~~v~~~~~s~~~~~l~~~~~~-------------~~~~~~v~~~d~~-~~~~~~~~~~~~  162 (615)
T 1pgu_A           98 DKESNSVEVNVKSEFQV-LAGPISDISWDFEGRRLCVVGEG-------------RDNFGVFISWDSG-NSLGEVSGHSQR  162 (615)
T ss_dssp             EGGGTEEEEEEEEEEEC-CSSCEEEEEECTTSSEEEEEECC-------------SSCSEEEEETTTC-CEEEECCSCSSC
T ss_pred             Ccccccccccccchhhc-ccccEEEEEEeCCCCEEEEeccC-------------CCCccEEEEEECC-CcceeeecCCcc
Confidence            2      1111111111 12356788999999866653210             0112577777743 333344444455


Q ss_pred             cceEEEcCCCCEEEEEEcCCCeEEEEEeecCCCcceEEeccCCCC---CCCceEECCC-CCEEEE-EecCCchhh
Q 026118          154 ANGVALSEDERFLVVCESWKFRCVKHFLKVSGRTDREIFIDNLPG---GPDNVNLARD-GSFWIS-IIKMDPKGI  223 (243)
Q Consensus       154 ~~gi~~~~dg~~l~v~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~---~~~~i~~d~~-G~lwv~-~~~~~~~~~  223 (243)
                      ...++|+++++.++++...++.|..|+....  .....+. ....   ....++++++ |++.+. ...+....+
T Consensus       163 v~~~~~~~~~~~~l~~~~~d~~v~vwd~~~~--~~~~~~~-~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~vw  234 (615)
T 1pgu_A          163 INACHLKQSRPMRSMTVGDDGSVVFYQGPPF--KFSASDR-THHKQGSFVRDVEFSPDSGEFVITVGSDRKISCF  234 (615)
T ss_dssp             EEEEEECSSSSCEEEEEETTTEEEEEETTTB--EEEEEEC-SSSCTTCCEEEEEECSTTCCEEEEEETTCCEEEE
T ss_pred             EEEEEECCCCCcEEEEEeCCCcEEEEeCCCc--ceeeeec-ccCCCCceEEEEEECCCCCCEEEEEeCCCeEEEE
Confidence            6789999999855555567789999986532  1112221 1222   3456888888 875544 434433333

>3jrp_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum; 2.60A {Saccharomyces cerevisiae}

Probab=98.58  E-value=3.9e-05  Score=62.10  Aligned_cols=191  Identities=16%  Similarity=0.086  Sum_probs=109.1

Q ss_pred             ccccCCcccEEEcCCCc-EEEEeCCCcEEEEccC-CceeE--ecccCCccccceEEccC--CCEEEEEeCCCcEEEEe-c
Q 026118            6 EGIVNHPEDVSVDGNGV-LYTATGDGWIKRMHPN-GTWED--WHQVGSQSLLGLTTTKE--NNVIIVCDSQQGLLKVS-E   78 (243)
Q Consensus         6 ~g~~~~p~~i~~d~~g~-l~~~~~~~~i~~~~~~-g~~~~--~~~~~~~~~~~i~~~~~--g~l~~v~~~~~gl~~~~-~   78 (243)
                      .|.-..-.++++.++|. |.++..++.|..++.. +....  .......+..++++.++  +++|+.+..++.|..++ .
T Consensus         8 ~~h~~~v~~~~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~v~iwd~~   87 (379)
T 3jrp_A            8 NAHNELIHDAVLDYYGKRLATCSSDKTIKIFEVEGETHKLIDTLTGHEGPVWRVDWAHPKFGTILASCSYDGKVLIWKEE   87 (379)
T ss_dssp             EECCCCEEEEEECSSSSEEEEEETTSCEEEEEEETTEEEEEEEECCCSSCEEEEEECCGGGCSEEEEEETTSCEEEEEEE
T ss_pred             cCCcccEEEEEEcCCCCEEEEEECCCcEEEEecCCCcceeeeEecCCCCcEEEEEeCCCCCCCEEEEeccCCEEEEEEcC
Confidence            33334556789999886 4455578889888832 22221  11111223337888765  88867776655677777 5


Q ss_pred             CC-cEEEEeccCCCcccCCccEEEcCC--CcEEEEeCCCCCCcccccccccccCCCceEEEEeCCCCee---EEeecccc
Q 026118           79 EG-VTVLVSQFNGSQLRFANDVIEASD--GSLYFTVSSTKFTPAEYYLDLVSGEPHGVLLKYDPSTNQT---SLVLDGLY  152 (243)
Q Consensus        79 ~g-~~~~~~~~~~~~~~~~~~l~~d~~--G~l~v~~~~~~~~~~~~~~~~~~~~~~g~v~~~~~~~~~~---~~~~~~~~  152 (243)
                      ++ ...+... .. ....+.++++.++  ++++++..                 ..+.|..+|..++..   ..+.....
T Consensus        88 ~~~~~~~~~~-~~-~~~~v~~~~~~~~~~~~~l~~~~-----------------~d~~i~v~d~~~~~~~~~~~~~~~~~  148 (379)
T 3jrp_A           88 NGRWSQIAVH-AV-HSASVNSVQWAPHEYGPLLLVAS-----------------SDGKVSVVEFKENGTTSPIIIDAHAI  148 (379)
T ss_dssp             TTEEEEEEEE-CC-CSSCEEEEEECCGGGCSEEEEEE-----------------TTSEEEEEECCTTSCCCEEEEECCTT
T ss_pred             CCceeEeeee-cC-CCcceEEEEeCCCCCCCEEEEec-----------------CCCcEEEEecCCCCceeeEEecCCCC
Confidence            55 3333221 11 1245678899998  77666532                 235677777765522   12223334


Q ss_pred             ccceEEEcC-------------CCCEEEEEEcCCCeEEEEEeecCCCcc-eEEeccCCCCCCCceEECCC---CCEEEEE
Q 026118          153 FANGVALSE-------------DERFLVVCESWKFRCVKHFLKVSGRTD-REIFIDNLPGGPDNVNLARD---GSFWISI  215 (243)
Q Consensus       153 ~~~gi~~~~-------------dg~~l~v~~~~~~~i~~~~~~~~~~~~-~~~~~~~~~~~~~~i~~d~~---G~lwv~~  215 (243)
                      ....++++|             +++.++++ ..++.|..|+........ ..............++++++   +++.++.
T Consensus       149 ~v~~~~~~~~~~~~~~~~~~~~~~~~l~~~-~~dg~i~i~d~~~~~~~~~~~~~~~~h~~~v~~~~~sp~~~~~~~l~s~  227 (379)
T 3jrp_A          149 GVNSASWAPATIEEDGEHNGTKESRKFVTG-GADNLVKIWKYNSDAQTYVLESTLEGHSDWVRDVAWSPTVLLRSYLASV  227 (379)
T ss_dssp             CEEEEEECCCC----------CTTCEEEEE-ETTSCEEEEEEETTTTEEEEEEEECCCSSCEEEEEECCCCSSSEEEEEE
T ss_pred             ceEEEEEcCccccccccccCCCCCCEEEEE-eCCCeEEEEEecCCCcceeeEEEEecccCcEeEEEECCCCCCCCeEEEE
Confidence            567899998             68855555 567889999987542211 11111112233556888888   6654444


Q ss_pred             e
Q 026118          216 I  216 (243)
Q Consensus       216 ~  216 (243)
                      .
T Consensus       228 ~  228 (379)
T 3jrp_A          228 S  228 (379)
T ss_dssp             E
T ss_pred             e
Confidence            3

>1mda_H Methylamine dehydrogenase (heavy subunit); electron transport; HET: TRQ; 2.50A {Paracoccus denitrificans} SCOP: b.69.2.1

Probab=98.57  E-value=2.9e-06  Score=69.73  Aligned_cols=94  Identities=12%  Similarity=0.028  Sum_probs=62.6

Q ss_pred             EEEcCCC-cEEEEeC---CCCCCcccccccccccCCCceEEEEeCCCCeeEEeeccccccceEEEcCCCCEEEEEEc-CC
Q 026118           99 VIEASDG-SLYFTVS---STKFTPAEYYLDLVSGEPHGVLLKYDPSTNQTSLVLDGLYFANGVALSEDERFLVVCES-WK  173 (243)
Q Consensus        99 l~~d~~G-~l~v~~~---~~~~~~~~~~~~~~~~~~~g~v~~~~~~~~~~~~~~~~~~~~~gi~~~~dg~~l~v~~~-~~  173 (243)
                      ++++++| ++|++..   +...            ...+.+..+|.++.+...-......|.+|++++||+++|++.. .+
T Consensus       269 v~~s~dg~~lyV~~~~~~~~~~------------~~~~~~~ViD~~t~~vv~~i~vg~~p~gi~~s~Dg~~l~va~~~~~  336 (368)
T 1mda_H          269 VAKLKNTDGIMILTVEHSRSCL------------AAAENTSSVTASVGQTSGPISNGHDSDAIIAAQDGASDNYANSAGT  336 (368)
T ss_dssp             EEEETTTTEEEEEEEECSSCTT------------SCEEEEEEEESSSCCEEECCEEEEEECEEEECCSSSCEEEEEETTT
T ss_pred             eEEcCCCCEEEEEeccccCccc------------ccCCCEEEEECCCCeEEEEEECCCCcceEEECCCCCEEEEEccCCC
Confidence            7889886 5888742   1000            0023566999998766543333347999999999998999987 68


Q ss_pred             CeEEEEEeecCCCcceEEeccCCCCCCCceEECCC
Q 026118          174 FRCVKHFLKVSGRTDREIFIDNLPGGPDNVNLARD  208 (243)
Q Consensus       174 ~~i~~~~~~~~~~~~~~~~~~~~~~~~~~i~~d~~  208 (243)
                      +.|..+|....  .....+  .....|.+|++..+
T Consensus       337 ~~VsVID~~t~--kvv~~I--~vg~~P~~i~~~~~  367 (368)
T 1mda_H          337 EVLDIYDAASD--QDQSSV--ELDKGPESLSVQNE  367 (368)
T ss_dssp             TEEEEEESSSC--EEEEEC--CCCSCCCEEECCCC
T ss_pred             CeEEEEECCCC--cEEEEE--ECCCCCCEEEeecC
Confidence            99999997653  222222  23457899988653

>2ecf_A Dipeptidyl peptidase IV; prolyl oligopeptidase family, peptidase family S9, hydrolase; 2.80A {Stenotrophomonas maltophilia}

Probab=98.57  E-value=2.6e-06  Score=76.03  Aligned_cols=198  Identities=13%  Similarity=0.058  Sum_probs=108.7

Q ss_pred             cccEEEcCCCc-EEEEeCCCcEEEEcc-CC---ceeEecccCCccccceEEccCCCEEEEEeCCCcEEEEe-cCC-cEEE
Q 026118           12 PEDVSVDGNGV-LYTATGDGWIKRMHP-NG---TWEDWHQVGSQSLLGLTTTKENNVIIVCDSQQGLLKVS-EEG-VTVL   84 (243)
Q Consensus        12 p~~i~~d~~g~-l~~~~~~~~i~~~~~-~g---~~~~~~~~~~~~~~~i~~~~~g~l~~v~~~~~gl~~~~-~~g-~~~~   84 (243)
                      ..++++.+||. |+++.. +.|+.++. .+   +...+........ .++++|||+.+.++. ...|+.++ .++ ...+
T Consensus       111 v~~~~~SpDg~~l~~~~~-~~i~~~d~~~~~~~~~~~l~~~~~~~~-~~~~SPDG~~la~~~-~~~i~~~d~~~g~~~~~  187 (741)
T 2ecf_A          111 IVDYQWSPDAQRLLFPLG-GELYLYDLKQEGKAAVRQLTHGEGFAT-DAKLSPKGGFVSFIR-GRNLWVIDLASGRQMQL  187 (741)
T ss_dssp             SCCCEECTTSSEEEEEET-TEEEEEESSSCSTTSCCBCCCSSSCEE-EEEECTTSSEEEEEE-TTEEEEEETTTTEEEEC
T ss_pred             cceeEECCCCCEEEEEeC-CcEEEEECCCCCcceEEEcccCCcccc-cccCCCCCCEEEEEe-CCcEEEEecCCCCEEEe
Confidence            46789999996 455544 88999984 44   4444333223344 789999999744444 45788888 556 3332


Q ss_pred             EeccCCC------------cccCCccEEEcCCCc-EEEEeCCCCCCcccc-------------cccc---cccCCCceEE
Q 026118           85 VSQFNGS------------QLRFANDVIEASDGS-LYFTVSSTKFTPAEY-------------YLDL---VSGEPHGVLL  135 (243)
Q Consensus        85 ~~~~~~~------------~~~~~~~l~~d~~G~-l~v~~~~~~~~~~~~-------------~~~~---~~~~~~g~v~  135 (243)
                      .......            ....+.+++++|||+ |+++..... ....+             ....   ........|+
T Consensus       188 ~~~~~~~~~~g~~~~v~~~~~~~~~~~~~SpDg~~l~~~~~d~~-~~~~~~~~~~~p~~~~~~~~~~~~~g~~~~~~~l~  266 (741)
T 2ecf_A          188 TADGSTTIGNGIAEFVADEEMDRHTGYWWAPDDSAIAYARIDES-PVPVQKRYEVYADRTDVIEQRYPAAGDANVQVKLG  266 (741)
T ss_dssp             CCCCCSSEEESCCCHHHHHHSCCCCSEEECTTSSCEEEEEEECT-TSCEEEEEEECSSCEEEEEEECCBTTSCCCEEEEE
T ss_pred             ccCCccceeccccceeeeeccccccceEECCCCCEEEEEEEcCC-CCceEecCCCCCCcccceEeecCCCCCCCCeeEEE
Confidence            2111000            001146789999997 555422100 00000             0000   0000122688


Q ss_pred             EEeCCC-CeeEEeec---cccccceEEEcCCCCEEEEEEc----CCCeEEEEEeecCCCcceEEeccCCCC---CCCceE
Q 026118          136 KYDPST-NQTSLVLD---GLYFANGVALSEDERFLVVCES----WKFRCVKHFLKVSGRTDREIFIDNLPG---GPDNVN  204 (243)
Q Consensus       136 ~~~~~~-~~~~~~~~---~~~~~~gi~~~~dg~~l~v~~~----~~~~i~~~~~~~~~~~~~~~~~~~~~~---~~~~i~  204 (243)
                      .+|.++ ++.+.+..   .......++| |||++|+++..    ....|+.++..++..  ...+.....+   ....++
T Consensus       267 ~~d~~~~~~~~~~~~~~~~~~~~~~~~~-pDg~~l~~~~~~~~~~~~~i~~~d~~~g~~--~~~~~~~~~~~~~~~~~~~  343 (741)
T 2ecf_A          267 VISPAEQAQTQWIDLGKEQDIYLARVNW-RDPQHLSFQRQSRDQKKLDLVEVTLASNQQ--RVLAHETSPTWVPLHNSLR  343 (741)
T ss_dssp             EECSSTTCCCEEECCCSCSSEEEEEEEE-EETTEEEEEEEETTSSEEEEEEEETTTCCE--EEEEEEECSSCCCCCSCCE
T ss_pred             EEECCCCCceEEecCCCCcceEEEEEEe-CCCCEEEEEEecccCCeEEEEEEECCCCce--EEEEEcCCCCcCCcCCceE
Confidence            899988 77665542   2234567999 99998887754    234688888765322  1122111111   224678


Q ss_pred             ECCCCCEEEEEe
Q 026118          205 LARDGSFWISII  216 (243)
Q Consensus       205 ~d~~G~lwv~~~  216 (243)
                      ++++|++++...
T Consensus       344 ~spdg~~~~~~~  355 (741)
T 2ecf_A          344 FLDDGSILWSSE  355 (741)
T ss_dssp             ECTTSCEEEEEC
T ss_pred             ECCCCeEEEEec
Confidence            888888554443

>3dwl_C Actin-related protein 2/3 complex subunit 1; propellor, actin-binding, ATP-binding, cytoskeleton, nucleot binding, WD repeat; HET: ATP; 3.78A {Schizosaccharomyces pombe}

Probab=98.57  E-value=7.8e-07  Score=72.67  Aligned_cols=189  Identities=6%  Similarity=-0.102  Sum_probs=103.2

Q ss_pred             CcccEEEcCCCc-EEEEeCCCcEEEEcc-CCc----eeEecccCCccccceEEccCCCEEEEEeCCCcEEEEe-cCCcE-
Q 026118           11 HPEDVSVDGNGV-LYTATGDGWIKRMHP-NGT----WEDWHQVGSQSLLGLTTTKENNVIIVCDSQQGLLKVS-EEGVT-   82 (243)
Q Consensus        11 ~p~~i~~d~~g~-l~~~~~~~~i~~~~~-~g~----~~~~~~~~~~~~~~i~~~~~g~l~~v~~~~~gl~~~~-~~g~~-   82 (243)
                      ...++++.++|. |..+..++.|..++. .++    ...+........ .+++++++++++++...+.+..++ ..+.. 
T Consensus        57 ~v~~~~~s~~~~~l~s~s~d~~v~vwd~~~~~~~~~~~~~~~~~~~v~-~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~  135 (377)
T 3dwl_C           57 IVTCVDWAPKSNRIVTCSQDRNAYVYEKRPDGTWKQTLVLLRLNRAAT-FVRWSPNEDKFAVGSGARVISVCYFEQENDW  135 (377)
T ss_dssp             CEEEEEECTTTCCEEEEETTSSEEEC------CCCCEEECCCCSSCEE-EEECCTTSSCCEEEESSSCEEECCC-----C
T ss_pred             eEEEEEEeCCCCEEEEEeCCCeEEEEEcCCCCceeeeeEecccCCceE-EEEECCCCCEEEEEecCCeEEEEEECCcccc
Confidence            345688888885 556668888999883 333    222222223334 889999998756666555566766 43310 


Q ss_pred             EEEeccCCCcccCCccEEEcCCCcEEEEeCCCCCCcccccccccccCCCceEEEEeCCC------------------Cee
Q 026118           83 VLVSQFNGSQLRFANDVIEASDGSLYFTVSSTKFTPAEYYLDLVSGEPHGVLLKYDPST------------------NQT  144 (243)
Q Consensus        83 ~~~~~~~~~~~~~~~~l~~d~~G~l~v~~~~~~~~~~~~~~~~~~~~~~g~v~~~~~~~------------------~~~  144 (243)
                      .............+.++++.|+|+++++.+.                 .+.|..+|...                  ++.
T Consensus       136 ~~~~~~~~~h~~~v~~~~~~~~~~~l~~~~~-----------------d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~  198 (377)
T 3dwl_C          136 WVSKHLKRPLRSTILSLDWHPNNVLLAAGCA-----------------DRKAYVLSAYVRDVDAKPEASVWGSRLPFNTV  198 (377)
T ss_dssp             CCCEEECSSCCSCEEEEEECTTSSEEEEEES-----------------SSCEEEEEECCSSCC-CCCSCSSCSCCCEEEE
T ss_pred             eeeeEeecccCCCeEEEEEcCCCCEEEEEeC-----------------CCEEEEEEEEecccCCCccccccccccchhhh
Confidence            0111111112345778899999987766322                 24555555431                  111


Q ss_pred             EEeeccccccceEEEcCCCCEEEEEEcCCCeEEEEEeecCCCcc--eEEeccCCCCCCCceEECCCCCEEEEEecCC
Q 026118          145 SLVLDGLYFANGVALSEDERFLVVCESWKFRCVKHFLKVSGRTD--REIFIDNLPGGPDNVNLARDGSFWISIIKMD  219 (243)
Q Consensus       145 ~~~~~~~~~~~gi~~~~dg~~l~v~~~~~~~i~~~~~~~~~~~~--~~~~~~~~~~~~~~i~~d~~G~lwv~~~~~~  219 (243)
                      ............++++|++++|+.+ ..++.|..|+........  ...+. ........+++.++|++.++...++
T Consensus       199 ~~~~~~~~~v~~~~~sp~~~~l~~~-~~d~~i~iwd~~~~~~~~~~~~~~~-~~~~~v~~~~~s~~~~~l~~~~~~~  273 (377)
T 3dwl_C          199 CAEYPSGGWVHAVGFSPSGNALAYA-GHDSSVTIAYPSAPEQPPRALITVK-LSQLPLRSLLWANESAIVAAGYNYS  273 (377)
T ss_dssp             EECCCCSSSEEEEEECTTSSCEEEE-ETTTEEC-CEECSTTSCEEECCCEE-CSSSCEEEEEEEETTEEEEEESSSS
T ss_pred             hhcccCCceEEEEEECCCCCEEEEE-eCCCcEEEEECCCCCCcceeeEeec-CCCCceEEEEEcCCCCEEEEEcCCc
Confidence            1111223345789999999966655 467889999987643211  11111 1222345688888887666654443

>1xfd_A DIP, dipeptidyl aminopeptidase-like protein 6, dipeptidylpeptidase 6; DPPX, DPP6, KV4, KV, KAF, membrane protein; HET: NDG NAG BMA MAN; 3.00A {Homo sapiens} SCOP: b.70.3.1 c.69.1.24

Probab=98.57  E-value=1.6e-06  Score=77.10  Aligned_cols=138  Identities=9%  Similarity=-0.031  Sum_probs=87.2

Q ss_pred             CcccEEEcCCCcEEEEeCCCcEEEEc-cCCceeEecccCC----ccccceEEccCCCEEEEEeCC---------CcEEEE
Q 026118           11 HPEDVSVDGNGVLYTATGDGWIKRMH-PNGTWEDWHQVGS----QSLLGLTTTKENNVIIVCDSQ---------QGLLKV   76 (243)
Q Consensus        11 ~p~~i~~d~~g~l~~~~~~~~i~~~~-~~g~~~~~~~~~~----~~~~~i~~~~~g~l~~v~~~~---------~gl~~~   76 (243)
                      .+.++++.+||.++.+..++.|+.++ .+++.........    ... .++++|||+.|.++...         ..++.+
T Consensus        18 ~~~~~~~spdg~~~~~~~dg~i~~~d~~~g~~~~~~~~~~~~~~~v~-~~~~SpDg~~l~~~~~~~~~~~~~~~~~i~~~   96 (723)
T 1xfd_A           18 HDPEAKWISDTEFIYREQKGTVRLWNVETNTSTVLIEGKKIESLRAI-RYEISPDREYALFSYNVEPIYQHSYTGYYVLS   96 (723)
T ss_dssp             CCCCCCBSSSSCBCCCCSSSCEEEBCGGGCCCEEEECTTTTTTTTCS-EEEECTTSSEEEEEESCCCCSSSCCCSEEEEE
T ss_pred             cccccEEcCCCcEEEEeCCCCEEEEECCCCcEEEEeccccccccccc-eEEECCCCCEEEEEecCccceeecceeeEEEE
Confidence            57788899999855555678899998 4555443332211    134 78999999974555432         346777


Q ss_pred             e-cCC-cEEEEeccCCCcccCCccEEEcCCCc-EEEEeCCCCCCcccccccccccCCCceEEEEeCCCCeeEEeeccc-c
Q 026118           77 S-EEG-VTVLVSQFNGSQLRFANDVIEASDGS-LYFTVSSTKFTPAEYYLDLVSGEPHGVLLKYDPSTNQTSLVLDGL-Y  152 (243)
Q Consensus        77 ~-~~g-~~~~~~~~~~~~~~~~~~l~~d~~G~-l~v~~~~~~~~~~~~~~~~~~~~~~g~v~~~~~~~~~~~~~~~~~-~  152 (243)
                      + .++ .+.+... .. ....+..++++|||+ +.++.                   .+.|+.++.++++...+.... .
T Consensus        97 d~~~~~~~~l~~~-~~-~~~~~~~~~~SPdG~~la~~~-------------------~~~i~~~~~~~g~~~~~~~~~~~  155 (723)
T 1xfd_A           97 KIPHGDPQSLDPP-EV-SNAKLQYAGWGPKGQQLIFIF-------------------ENNIYYCAHVGKQAIRVVSTGKE  155 (723)
T ss_dssp             ESSSCCCEECCCT-TC-CSCCCSBCCBCSSTTCEEEEE-------------------TTEEEEESSSSSCCEEEECCCBT
T ss_pred             ECCCCceEeccCC-cc-ccccccccEECCCCCEEEEEE-------------------CCeEEEEECCCCceEEEecCCCC
Confidence            8 556 5333221 11 112355678999996 44431                   147999999888776654321 1


Q ss_pred             ------------------ccceEEEcCCCCEEEEEE
Q 026118          153 ------------------FANGVALSEDERFLVVCE  170 (243)
Q Consensus       153 ------------------~~~gi~~~~dg~~l~v~~  170 (243)
                                        ...+++|+|||+.|+++.
T Consensus       156 ~~~~~g~~~~v~~ee~~~~~~~~~~SpDg~~la~~~  191 (723)
T 1xfd_A          156 GVIYNGLSDWLYEEEILKTHIAHWWSPDGTRLAYAA  191 (723)
T ss_dssp             TTEEEEECCHHHHHTTSSSSEEEEECTTSSEEEEEE
T ss_pred             CceECcccceeEEEEeccCcceEEECCCCCEEEEEE
Confidence                              225799999999887764

>2ynn_A Coatomer subunit beta'; protein transport, peptide binding protein, membrane traffic COPI-mediated trafficking, dilysine motifs; 1.78A {Saccharomyces cerevisiae} PDB: 2yno_A

Probab=98.56  E-value=2.9e-05  Score=61.75  Aligned_cols=151  Identities=11%  Similarity=0.012  Sum_probs=95.9

Q ss_pred             CCcccEEEcCCCcEE-EEeCCCcEEEEcc-CCceeEecccCCccccceEEccCCCEEEEEeCCCcEEEEe-cCC-c-EEE
Q 026118           10 NHPEDVSVDGNGVLY-TATGDGWIKRMHP-NGTWEDWHQVGSQSLLGLTTTKENNVIIVCDSQQGLLKVS-EEG-V-TVL   84 (243)
Q Consensus        10 ~~p~~i~~d~~g~l~-~~~~~~~i~~~~~-~g~~~~~~~~~~~~~~~i~~~~~g~l~~v~~~~~gl~~~~-~~g-~-~~~   84 (243)
                      ..-.++++.|+|.+. .+..++.|..++. +++..........+...+.+.++++++.++..+..+..++ .++ . ..+
T Consensus        14 ~~V~~~~fsp~~~~l~s~~~dg~v~lWd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~s~d~~i~vwd~~~~~~~~~~   93 (304)
T 2ynn_A           14 DRVKGIDFHPTEPWVLTTLYSGRVELWNYETQVEVRSIQVTETPVRAGKFIARKNWIIVGSDDFRIRVFNYNTGEKVVDF   93 (304)
T ss_dssp             SCEEEEEECSSSSEEEEEETTSEEEEEETTTTEEEEEEECCSSCEEEEEEEGGGTEEEEEETTSEEEEEETTTCCEEEEE
T ss_pred             CceEEEEECCCCCEEEEEcCCCcEEEEECCCCceeEEeeccCCcEEEEEEeCCCCEEEEECCCCEEEEEECCCCcEEEEE
Confidence            345689999999644 5558899999983 4443222222223333788999999866666555677777 666 2 222


Q ss_pred             EeccCCCcccCCccEEEcCCCcEEEEeCCCCCCcccccccccccCCCceEEEEeCCCC-eeEEee-ccccccceEEEcC-
Q 026118           85 VSQFNGSQLRFANDVIEASDGSLYFTVSSTKFTPAEYYLDLVSGEPHGVLLKYDPSTN-QTSLVL-DGLYFANGVALSE-  161 (243)
Q Consensus        85 ~~~~~~~~~~~~~~l~~d~~G~l~v~~~~~~~~~~~~~~~~~~~~~~g~v~~~~~~~~-~~~~~~-~~~~~~~gi~~~~-  161 (243)
                      ..     ....+.++++.|++.+.++.+.                 .+.|..+|..++ ...... ........++|+| 
T Consensus        94 ~~-----h~~~v~~~~~~~~~~~l~sgs~-----------------D~~v~lWd~~~~~~~~~~~~~h~~~v~~v~~~p~  151 (304)
T 2ynn_A           94 EA-----HPDYIRSIAVHPTKPYVLSGSD-----------------DLTVKLWNWENNWALEQTFEGHEHFVMCVAFNPK  151 (304)
T ss_dssp             EC-----CSSCEEEEEECSSSSEEEEEET-----------------TSCEEEEEGGGTTEEEEEECCCCSCEEEEEECTT
T ss_pred             eC-----CCCcEEEEEEcCCCCEEEEECC-----------------CCeEEEEECCCCcchhhhhcccCCcEEEEEECCC
Confidence            21     1235678999999987776432                 346666776544 333322 2334567899998 


Q ss_pred             CCCEEEEEEcCCCeEEEEEeec
Q 026118          162 DERFLVVCESWKFRCVKHFLKV  183 (243)
Q Consensus       162 dg~~l~v~~~~~~~i~~~~~~~  183 (243)
                      +++ ++++...++.|..++...
T Consensus       152 ~~~-~l~sgs~D~~v~iwd~~~  172 (304)
T 2ynn_A          152 DPS-TFASGCLDRTVKVWSLGQ  172 (304)
T ss_dssp             CTT-EEEEEETTSEEEEEETTC
T ss_pred             CCC-EEEEEeCCCeEEEEECCC
Confidence            566 555556778999999753

>2ecf_A Dipeptidyl peptidase IV; prolyl oligopeptidase family, peptidase family S9, hydrolase; 2.80A {Stenotrophomonas maltophilia}

Probab=98.56  E-value=1.5e-05  Score=71.09  Aligned_cols=180  Identities=12%  Similarity=0.108  Sum_probs=101.4

Q ss_pred             cccEEEcCCCc-EEEEeCCC---------------------------------cEEEEcc-C-CceeEeccc---CCccc
Q 026118           12 PEDVSVDGNGV-LYTATGDG---------------------------------WIKRMHP-N-GTWEDWHQV---GSQSL   52 (243)
Q Consensus        12 p~~i~~d~~g~-l~~~~~~~---------------------------------~i~~~~~-~-g~~~~~~~~---~~~~~   52 (243)
                      +.++++.+||. |+++..++                                 .|+.++. + ++.......   .....
T Consensus       211 ~~~~~~SpDg~~l~~~~~d~~~~~~~~~~~~~p~~~~~~~~~~~~~g~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~  290 (741)
T 2ecf_A          211 HTGYWWAPDDSAIAYARIDESPVPVQKRYEVYADRTDVIEQRYPAAGDANVQVKLGVISPAEQAQTQWIDLGKEQDIYLA  290 (741)
T ss_dssp             CCSEEECTTSSCEEEEEEECTTSCEEEEEEECSSCEEEEEEECCBTTSCCCEEEEEEECSSTTCCCEEECCCSCSSEEEE
T ss_pred             ccceEECCCCCEEEEEEEcCCCCceEecCCCCCCcccceEeecCCCCCCCCeeEEEEEECCCCCceEEecCCCCcceEEE
Confidence            57899999995 66654322                                 5677773 4 554433221   12233


Q ss_pred             cceEEccCCCEEEEEeC-----CCcEEEEe-cCC-cEEEEeccCCCcccCCccEEEcCCCcEEEEeCCCCCCcccccccc
Q 026118           53 LGLTTTKENNVIIVCDS-----QQGLLKVS-EEG-VTVLVSQFNGSQLRFANDVIEASDGSLYFTVSSTKFTPAEYYLDL  125 (243)
Q Consensus        53 ~~i~~~~~g~l~~v~~~-----~~gl~~~~-~~g-~~~~~~~~~~~~~~~~~~l~~d~~G~l~v~~~~~~~~~~~~~~~~  125 (243)
                       .+++ +||+.|+++..     ...|+.++ .++ .+.+.............++++++||+++++...            
T Consensus       291 -~~~~-pDg~~l~~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~~~~~~spdg~~~~~~~~------------  356 (741)
T 2ecf_A          291 -RVNW-RDPQHLSFQRQSRDQKKLDLVEVTLASNQQRVLAHETSPTWVPLHNSLRFLDDGSILWSSER------------  356 (741)
T ss_dssp             -EEEE-EETTEEEEEEEETTSSEEEEEEEETTTCCEEEEEEEECSSCCCCCSCCEECTTSCEEEEECT------------
T ss_pred             -EEEe-CCCCEEEEEEecccCCeEEEEEEECCCCceEEEEEcCCCCcCCcCCceEECCCCeEEEEecC------------
Confidence             7889 99997555432     12478888 666 444332211111113357799999996665432            


Q ss_pred             cccCCCceEEEEeCCCCeeEEeeccccccceE-EEcCCCCEEEEEEcCCC----eEEEEEeecCCCcceEEeccCCCCCC
Q 026118          126 VSGEPHGVLLKYDPSTNQTSLVLDGLYFANGV-ALSEDERFLVVCESWKF----RCVKHFLKVSGRTDREIFIDNLPGGP  200 (243)
Q Consensus       126 ~~~~~~g~v~~~~~~~~~~~~~~~~~~~~~gi-~~~~dg~~l~v~~~~~~----~i~~~~~~~~~~~~~~~~~~~~~~~~  200 (243)
                         .....||.++.+++ .+.+.........+ .++++|+.|+++...++    .|+.++.++.   ..+.+. . ....
T Consensus       357 ---~g~~~l~~~~~~~~-~~~l~~~~~~v~~~~~~s~dg~~l~~~~~~~~~~~~~l~~~~~~g~---~~~~l~-~-~~~~  427 (741)
T 2ecf_A          357 ---TGFQHLYRIDSKGK-AAALTHGNWSVDELLAVDEKAGLAYFRAGIESARESQIYAVPLQGG---QPQRLS-K-APGM  427 (741)
T ss_dssp             ---TSSCEEEEECSSSC-EEESCCSSSCEEEEEEEETTTTEEEEEECSSCTTCBEEEEEETTCC---CCEECC-C-SCSE
T ss_pred             ---CCccEEEEEcCCCC-eeeeeecceEEEeEeEEeCCCCEEEEEEeCCCCceEEEEEEEcCCC---Ceeecc-c-CCCc
Confidence               12247999998755 55554443334455 59999998877755432    3555543332   122222 1 1223


Q ss_pred             CceEECCCCCEEEE
Q 026118          201 DNVNLARDGSFWIS  214 (243)
Q Consensus       201 ~~i~~d~~G~lwv~  214 (243)
                      ..++++++|+.++.
T Consensus       428 ~~~~~spdg~~l~~  441 (741)
T 2ecf_A          428 HSASFARNASVYVD  441 (741)
T ss_dssp             EEEEECTTSSEEEE
T ss_pred             eEEEECCCCCEEEE
Confidence            45788888874443

>3dwl_C Actin-related protein 2/3 complex subunit 1; propellor, actin-binding, ATP-binding, cytoskeleton, nucleot binding, WD repeat; HET: ATP; 3.78A {Schizosaccharomyces pombe}

Probab=98.56  E-value=1.3e-06  Score=71.41  Aligned_cols=184  Identities=8%  Similarity=0.002  Sum_probs=102.0

Q ss_pred             cccEEEcCCCcEEEE-eCCCcEEEEcc-CCceeE---ecccCCccccceEEccCCCEEEEEeCCCcEEEEe-cCCc--EE
Q 026118           12 PEDVSVDGNGVLYTA-TGDGWIKRMHP-NGTWED---WHQVGSQSLLGLTTTKENNVIIVCDSQQGLLKVS-EEGV--TV   83 (243)
Q Consensus        12 p~~i~~d~~g~l~~~-~~~~~i~~~~~-~g~~~~---~~~~~~~~~~~i~~~~~g~l~~v~~~~~gl~~~~-~~g~--~~   83 (243)
                      -.++++.++|.+.++ ..++.|..++. .+....   +........ .+++++++++|+.+..++.+..++ .++.  ..
T Consensus        14 v~~~~~s~~g~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~h~~~v~-~~~~s~~~~~l~s~s~d~~v~vwd~~~~~~~~~   92 (377)
T 3dwl_C           14 SYEHAFNSQRTEFVTTTATNQVELYEQDGNGWKHARTFSDHDKIVT-CVDWAPKSNRIVTCSQDRNAYVYEKRPDGTWKQ   92 (377)
T ss_dssp             CSCCEECSSSSEEECCCSSSCBCEEEEETTEEEECCCBCCCSSCEE-EEEECTTTCCEEEEETTSSEEEC------CCCC
T ss_pred             EEEEEECCCCCEEEEecCCCEEEEEEccCCceEEEEEEecCCceEE-EEEEeCCCCEEEEEeCCCeEEEEEcCCCCceee
Confidence            457899998875544 47788888873 442121   211112234 889999998756666555677777 4432  11


Q ss_pred             EEeccCCCcccCCccEEEcCCCcEEEEeCCCCCCcccccccccccCCCceEEEEeCCCCe----eEEeec-cccccceEE
Q 026118           84 LVSQFNGSQLRFANDVIEASDGSLYFTVSSTKFTPAEYYLDLVSGEPHGVLLKYDPSTNQ----TSLVLD-GLYFANGVA  158 (243)
Q Consensus        84 ~~~~~~~~~~~~~~~l~~d~~G~l~v~~~~~~~~~~~~~~~~~~~~~~g~v~~~~~~~~~----~~~~~~-~~~~~~gi~  158 (243)
                      ... ... ....+.++++.++|+++++.+                 ..+.|..++.++++    ...+.. .......++
T Consensus        93 ~~~-~~~-~~~~v~~~~~~~~~~~l~~~~-----------------~d~~i~iwd~~~~~~~~~~~~~~~~h~~~v~~~~  153 (377)
T 3dwl_C           93 TLV-LLR-LNRAATFVRWSPNEDKFAVGS-----------------GARVISVCYFEQENDWWVSKHLKRPLRSTILSLD  153 (377)
T ss_dssp             EEE-CCC-CSSCEEEEECCTTSSCCEEEE-----------------SSSCEEECCC-----CCCCEEECSSCCSCEEEEE
T ss_pred             eeE-ecc-cCCceEEEEECCCCCEEEEEe-----------------cCCeEEEEEECCcccceeeeEeecccCCCeEEEE
Confidence            111 111 123567888999987655522                 23467777776554    233333 345567899


Q ss_pred             EcCCCCEEEEEEcCCCeEEEEEeecCCCc-------------ceEEecc-CCCCCCCceEECCCCCEEEEEe
Q 026118          159 LSEDERFLVVCESWKFRCVKHFLKVSGRT-------------DREIFID-NLPGGPDNVNLARDGSFWISII  216 (243)
Q Consensus       159 ~~~dg~~l~v~~~~~~~i~~~~~~~~~~~-------------~~~~~~~-~~~~~~~~i~~d~~G~lwv~~~  216 (243)
                      ++|++++|+.+ ..++.|..|+.......             ..+.... ...+....++++++|++.++..
T Consensus       154 ~~~~~~~l~~~-~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~  224 (377)
T 3dwl_C          154 WHPNNVLLAAG-CADRKAYVLSAYVRDVDAKPEASVWGSRLPFNTVCAEYPSGGWVHAVGFSPSGNALAYAG  224 (377)
T ss_dssp             ECTTSSEEEEE-ESSSCEEEEEECCSSCC-CCCSCSSCSCCCEEEEEECCCCSSSEEEEEECTTSSCEEEEE
T ss_pred             EcCCCCEEEEE-eCCCEEEEEEEEecccCCCccccccccccchhhhhhcccCCceEEEEEECCCCCEEEEEe
Confidence            99999966555 45688999998522110             0111110 1122355688999998544443

>4g56_B MGC81050 protein; protein arginine methyltransferase, protein complexes, histo methylation, transferase; HET: SAH; 2.95A {Xenopus laevis}

Probab=98.56  E-value=2.7e-06  Score=69.53  Aligned_cols=183  Identities=10%  Similarity=-0.013  Sum_probs=106.2

Q ss_pred             cccEEEcCCCcE-EEEeCCCcEEEEcc-CCceeE-ecccCCccccceEEccCCC-EEEEEeCCCcEEEEe-cCC-cEEEE
Q 026118           12 PEDVSVDGNGVL-YTATGDGWIKRMHP-NGTWED-WHQVGSQSLLGLTTTKENN-VIIVCDSQQGLLKVS-EEG-VTVLV   85 (243)
Q Consensus        12 p~~i~~d~~g~l-~~~~~~~~i~~~~~-~g~~~~-~~~~~~~~~~~i~~~~~g~-l~~v~~~~~gl~~~~-~~g-~~~~~   85 (243)
                      ..++++.++|.. ..+..++.|..++. .++... +........ .+++.+++. ++..+...+.|..+| .++ .....
T Consensus       142 V~~v~~spdg~~l~sgs~dg~v~iwd~~~~~~~~~~~~h~~~v~-~v~~s~~~~~~~~s~~~dg~v~~wd~~~~~~~~~~  220 (357)
T 4g56_B          142 VKTLSVFSDGTQAVSGGKDFSVKVWDLSQKAVLKSYNAHSSEVN-CVAACPGKDTIFLSCGEDGRILLWDTRKPKPATRI  220 (357)
T ss_dssp             EEEEEECSSSSEEEEEETTSCEEEEETTTTEEEEEECCCSSCEE-EEEECTTCSSCEEEEETTSCEEECCTTSSSCBCBC
T ss_pred             EEEEEECCCCCEEEEEeCCCeEEEEECCCCcEEEEEcCCCCCEE-EEEEccCCCceeeeeccCCceEEEECCCCceeeee
Confidence            456888998864 45568889999984 454333 222222334 788988775 424444444566677 554 21111


Q ss_pred             eccCCCcccCCccEEEcCCC-cEEEEeCCCCCCcccccccccccCCCceEEEEeCCCCeeEEee-ccccccceEEEcCCC
Q 026118           86 SQFNGSQLRFANDVIEASDG-SLYFTVSSTKFTPAEYYLDLVSGEPHGVLLKYDPSTNQTSLVL-DGLYFANGVALSEDE  163 (243)
Q Consensus        86 ~~~~~~~~~~~~~l~~d~~G-~l~v~~~~~~~~~~~~~~~~~~~~~~g~v~~~~~~~~~~~~~~-~~~~~~~gi~~~~dg  163 (243)
                      .  .......+.++++.|++ .++++.+                 ..+.|..+|..+++..... ........++|+|++
T Consensus       221 ~--~~~~~~~v~~v~~sp~~~~~la~g~-----------------~d~~i~~wd~~~~~~~~~~~~~~~~v~~l~~sp~~  281 (357)
T 4g56_B          221 D--FCASDTIPTSVTWHPEKDDTFACGD-----------------ETGNVSLVNIKNPDSAQTSAVHSQNITGLAYSYHS  281 (357)
T ss_dssp             C--CTTCCSCEEEEEECTTSTTEEEEEE-----------------SSSCEEEEESSCGGGCEEECCCSSCEEEEEECSSS
T ss_pred             e--eccccccccchhhhhcccceEEEee-----------------cccceeEEECCCCcEeEEEeccceeEEEEEEcCCC
Confidence            1  11112346678888875 5555421                 2356888888766544333 233455789999998


Q ss_pred             CEEEEEEcCCCeEEEEEeecCCCcceEEeccCCCCCCCceEECC-CCCEEEEEecC
Q 026118          164 RFLVVCESWKFRCVKHFLKVSGRTDREIFIDNLPGGPDNVNLAR-DGSFWISIIKM  218 (243)
Q Consensus       164 ~~l~v~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~i~~d~-~G~lwv~~~~~  218 (243)
                      +.+.++...++.|..+|.+....  .+.+  .-......+++.+ ++++.++....
T Consensus       282 ~~~lasgs~D~~i~iwd~~~~~~--~~~~--~H~~~V~~vafsP~d~~~l~s~s~D  333 (357)
T 4g56_B          282 SPFLASISEDCTVAVLDADFSEV--FRDL--SHRDFVTGVAWSPLDHSKFTTVGWD  333 (357)
T ss_dssp             SCCEEEEETTSCEEEECTTSCEE--EEEC--CCSSCEEEEEECSSSTTEEEEEETT
T ss_pred             CCEEEEEeCCCEEEEEECCCCcE--eEEC--CCCCCEEEEEEeCCCCCEEEEEcCC
Confidence            64555555678899998764311  1121  1223456788886 67766655443

>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A

Probab=98.54  E-value=1.9e-05  Score=71.02  Aligned_cols=183  Identities=11%  Similarity=0.040  Sum_probs=110.3

Q ss_pred             cCCcccEEEcCCCc-EEEEeCCCcEEEEc-cCCceeEecccCCccccceEEccCCCEEEEEeCCCcEEEEe-cCC-c-EE
Q 026118            9 VNHPEDVSVDGNGV-LYTATGDGWIKRMH-PNGTWEDWHQVGSQSLLGLTTTKENNVIIVCDSQQGLLKVS-EEG-V-TV   83 (243)
Q Consensus         9 ~~~p~~i~~d~~g~-l~~~~~~~~i~~~~-~~g~~~~~~~~~~~~~~~i~~~~~g~l~~v~~~~~gl~~~~-~~g-~-~~   83 (243)
                      -....++++.++|. |.++..++.|..++ .+++..........+..+++++++|+++.++...+.|..++ .++ . ..
T Consensus        13 ~~~v~~i~~sp~~~~la~~~~~g~v~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vw~~~~~~~~~~   92 (814)
T 3mkq_A           13 SDRVKGIDFHPTEPWVLTTLYSGRVEIWNYETQVEVRSIQVTETPVRAGKFIARKNWIIVGSDDFRIRVFNYNTGEKVVD   92 (814)
T ss_dssp             CSCEEEEEECSSSSEEEEEETTSEEEEEETTTTEEEEEEECCSSCEEEEEEEGGGTEEEEEETTSEEEEEETTTCCEEEE
T ss_pred             CCceEEEEECCCCCEEEEEeCCCEEEEEECCCCceEEEEecCCCcEEEEEEeCCCCEEEEEeCCCeEEEEECCCCcEEEE
Confidence            34567899999986 55666788899998 45543332222223333899999999866666555677788 666 2 22


Q ss_pred             EEeccCCCcccCCccEEEcCCCcEEEEeCCCCCCcccccccccccCCCceEEEEeCCCC-eeEEee-ccccccceEEEcC
Q 026118           84 LVSQFNGSQLRFANDVIEASDGSLYFTVSSTKFTPAEYYLDLVSGEPHGVLLKYDPSTN-QTSLVL-DGLYFANGVALSE  161 (243)
Q Consensus        84 ~~~~~~~~~~~~~~~l~~d~~G~l~v~~~~~~~~~~~~~~~~~~~~~~g~v~~~~~~~~-~~~~~~-~~~~~~~gi~~~~  161 (243)
                      +..     ....+.++++.|+|...++.+                 ..+.|..++.+++ ...... ........++|+|
T Consensus        93 ~~~-----~~~~v~~~~~s~~~~~l~~~~-----------------~dg~i~vw~~~~~~~~~~~~~~~~~~v~~~~~~p  150 (814)
T 3mkq_A           93 FEA-----HPDYIRSIAVHPTKPYVLSGS-----------------DDLTVKLWNWENNWALEQTFEGHEHFVMCVAFNP  150 (814)
T ss_dssp             EEC-----CSSCEEEEEECSSSSEEEEEE-----------------TTSEEEEEEGGGTSEEEEEEECCSSCEEEEEEET
T ss_pred             Eec-----CCCCEEEEEEeCCCCEEEEEc-----------------CCCEEEEEECCCCceEEEEEcCCCCcEEEEEEEc
Confidence            221     123567889999998665522                 2356777777654 333332 3334567899999


Q ss_pred             -CCCEEEEEEcCCCeEEEEEeecCCCcceEEeccCCCCCCCceEECC--CCCEEEEEe
Q 026118          162 -DERFLVVCESWKFRCVKHFLKVSGRTDREIFIDNLPGGPDNVNLAR--DGSFWISII  216 (243)
Q Consensus       162 -dg~~l~v~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~i~~d~--~G~lwv~~~  216 (243)
                       +++.++++ ..++.|..|+.......  ..+..........+++.+  +|++.+...
T Consensus       151 ~~~~~l~~~-~~dg~v~vwd~~~~~~~--~~~~~~~~~~v~~~~~~~~~~~~~l~~~~  205 (814)
T 3mkq_A          151 KDPSTFASG-CLDRTVKVWSLGQSTPN--FTLTTGQERGVNYVDYYPLPDKPYMITAS  205 (814)
T ss_dssp             TEEEEEEEE-ETTSEEEEEETTCSSCS--EEEECCCTTCCCEEEECCSTTCCEEEEEC
T ss_pred             CCCCEEEEE-eCCCeEEEEECCCCcce--eEEecCCCCCEEEEEEEECCCCCEEEEEe
Confidence             77745544 56789999997643221  122112223345566666  666444433

>4ery_A WD repeat-containing protein 5; WD40, WIN motif, beta propeller, 3-10 helix, lysine methyltransferase, RBBP5, ASH2L, core complex; 1.30A {Homo sapiens} PDB: 2h6k_A* 2h68_A* 2h6q_A* 3eg6_A 4erq_A 2h6n_A 4erz_A 4es0_A 4esg_A 4ewr_A 2gnq_A 2xl2_A 2xl3_A 3uvk_A* 3psl_A* 3uvl_A 3uvm_A 3uvn_A 3uvo_A 2h14_A ...

Probab=98.53  E-value=7.7e-05  Score=59.16  Aligned_cols=150  Identities=15%  Similarity=0.113  Sum_probs=96.3

Q ss_pred             CcccEEEcCCCcE-EEEeCCCcEEEEc-cCCcee-EecccCCccccceEEccCCCEEEEEeCCCcEEEEe-cCC-cEEEE
Q 026118           11 HPEDVSVDGNGVL-YTATGDGWIKRMH-PNGTWE-DWHQVGSQSLLGLTTTKENNVIIVCDSQQGLLKVS-EEG-VTVLV   85 (243)
Q Consensus        11 ~p~~i~~d~~g~l-~~~~~~~~i~~~~-~~g~~~-~~~~~~~~~~~~i~~~~~g~l~~v~~~~~gl~~~~-~~g-~~~~~   85 (243)
                      ...++++.+++.+ ..+..++.|..++ ..++.. .+........ .+.+++++++++.+...+.+..++ .++ .....
T Consensus        67 ~v~~~~~~~~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~v~-~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~  145 (312)
T 4ery_A           67 GISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVF-CCNFNPQSNLIVSGSFDESVRIWDVKTGKCLKTL  145 (312)
T ss_dssp             CEEEEEECTTSSEEEEEETTSEEEEEETTTCCEEEEEECCSSCEE-EEEECSSSSEEEEEETTSCEEEEETTTCCEEEEE
T ss_pred             ceEEEEEcCCCCEEEEECCCCEEEEEECCCCcEEEEEcCCCCCEE-EEEEcCCCCEEEEEeCCCcEEEEECCCCEEEEEe
Confidence            3457888888864 4555888899998 344433 2322222334 788999999866666666688888 655 22211


Q ss_pred             eccCCCcccCCccEEEcCCCcEEEEeCCCCCCcccccccccccCCCceEEEEeCCCCeeEEee--ccccccceEEEcCCC
Q 026118           86 SQFNGSQLRFANDVIEASDGSLYFTVSSTKFTPAEYYLDLVSGEPHGVLLKYDPSTNQTSLVL--DGLYFANGVALSEDE  163 (243)
Q Consensus        86 ~~~~~~~~~~~~~l~~d~~G~l~v~~~~~~~~~~~~~~~~~~~~~~g~v~~~~~~~~~~~~~~--~~~~~~~gi~~~~dg  163 (243)
                      .   . ....+.+++++++|+++++.+                 ..+.|..+|..+++.....  ........+++++++
T Consensus       146 ~---~-~~~~v~~~~~~~~~~~l~~~~-----------------~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~  204 (312)
T 4ery_A          146 P---A-HSDPVSAVHFNRDGSLIVSSS-----------------YDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNG  204 (312)
T ss_dssp             C---C-CSSCEEEEEECTTSSEEEEEE-----------------TTSCEEEEETTTCCEEEEECCSSCCCEEEEEECTTS
T ss_pred             c---C-CCCcEEEEEEcCCCCEEEEEe-----------------CCCcEEEEECCCCceeeEEeccCCCceEEEEECCCC
Confidence            1   1 113456788999998776632                 2357888888766544322  222334678999999


Q ss_pred             CEEEEEEcCCCeEEEEEeec
Q 026118          164 RFLVVCESWKFRCVKHFLKV  183 (243)
Q Consensus       164 ~~l~v~~~~~~~i~~~~~~~  183 (243)
                      ++|+.+ ..++.|..|+...
T Consensus       205 ~~l~~~-~~d~~i~iwd~~~  223 (312)
T 4ery_A          205 KYILAA-TLDNTLKLWDYSK  223 (312)
T ss_dssp             SEEEEE-ETTTEEEEEETTT
T ss_pred             CEEEEE-cCCCeEEEEECCC
Confidence            966665 4568899998764

>1sq9_A Antiviral protein SKI8; WD repeat, beta-transducin repeat, WD40 repeat, beta propeller, recombination; 1.90A {Saccharomyces cerevisiae} SCOP: b.69.4.1 PDB: 1s4u_X

Probab=98.53  E-value=1.8e-05  Score=64.89  Aligned_cols=155  Identities=10%  Similarity=0.039  Sum_probs=98.0

Q ss_pred             CCcccEEEcCCCcEEEEeCCCcEEEEcc-CCceeEeccc-------CCccccceEEccCCCEEEEEeCC---CcEEEEe-
Q 026118           10 NHPEDVSVDGNGVLYTATGDGWIKRMHP-NGTWEDWHQV-------GSQSLLGLTTTKENNVIIVCDSQ---QGLLKVS-   77 (243)
Q Consensus        10 ~~p~~i~~d~~g~l~~~~~~~~i~~~~~-~g~~~~~~~~-------~~~~~~~i~~~~~g~l~~v~~~~---~gl~~~~-   77 (243)
                      ....++++.+++.+.++..++.|..++. .++.......       ..... .+++++++++++++...   +.|..++ 
T Consensus       187 ~~i~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~h~~~~~~i~-~i~~~~~~~~l~~~~~d~~~g~i~i~d~  265 (397)
T 1sq9_A          187 QFATSVDISERGLIATGFNNGTVQISELSTLRPLYNFESQHSMINNSNSIR-SVKFSPQGSLLAIAHDSNSFGCITLYET  265 (397)
T ss_dssp             CCCCEEEECTTSEEEEECTTSEEEEEETTTTEEEEEEECCC---CCCCCEE-EEEECSSTTEEEEEEEETTEEEEEEEET
T ss_pred             CCceEEEECCCceEEEEeCCCcEEEEECCCCceeEEEeccccccccCCccc-eEEECCCCCEEEEEecCCCCceEEEEEC
Confidence            3467889998884445557888999984 4443322221       23334 89999999985666554   4577777 


Q ss_pred             cCC--cEEEEeccCC--------CcccCCccEEEcCCCcEEEEeCCCCCCcccccccccccCCCceEEEEeCCCCeeEEe
Q 026118           78 EEG--VTVLVSQFNG--------SQLRFANDVIEASDGSLYFTVSSTKFTPAEYYLDLVSGEPHGVLLKYDPSTNQTSLV  147 (243)
Q Consensus        78 ~~g--~~~~~~~~~~--------~~~~~~~~l~~d~~G~l~v~~~~~~~~~~~~~~~~~~~~~~g~v~~~~~~~~~~~~~  147 (243)
                      .++  ...+......        .....+.+++++++|+++++.+                 ..+.|..+|..+++....
T Consensus       266 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~-----------------~dg~i~iwd~~~~~~~~~  328 (397)
T 1sq9_A          266 EFGERIGSLSVPTHSSQASLGEFAHSSWVMSLSFNDSGETLCSAG-----------------WDGKLRFWDVKTKERITT  328 (397)
T ss_dssp             TTCCEEEEECBC--------CCBSBSSCEEEEEECSSSSEEEEEE-----------------TTSEEEEEETTTTEEEEE
T ss_pred             CCCcccceeccCcccccccccccccCCcEEEEEECCCCCEEEEEe-----------------CCCeEEEEEcCCCceeEE
Confidence            555  2222210000        0124567889999998777632                 245788888887765544


Q ss_pred             ec------c----------------ccccceEEEcCCC----------CEEEEEEcCCCeEEEEEeec
Q 026118          148 LD------G----------------LYFANGVALSEDE----------RFLVVCESWKFRCVKHFLKV  183 (243)
Q Consensus       148 ~~------~----------------~~~~~gi~~~~dg----------~~l~v~~~~~~~i~~~~~~~  183 (243)
                      ..      .                ......+++++++          + ++++...++.|..|+.++
T Consensus       329 ~~~~~~~~~~~~~~~~g~~~~~~~~~~~v~~~~~~~~g~~~~~~~~~~~-~l~s~~~dg~i~iw~~~~  395 (397)
T 1sq9_A          329 LNMHCDDIEIEEDILAVDEHGDSLAEPGVFDVKFLKKGWRSGMGADLNE-SLCCVCLDRSIRWFREAG  395 (397)
T ss_dssp             EECCGGGCSSGGGCCCBCTTSCBCSSCCEEEEEEECTTTSBSTTCTTSC-EEEEEETTTEEEEEEEEC
T ss_pred             EecccCcccchhhhhccccccccccCCceeEEEeccccccccccccccc-eEEEecCCCcEEEEEcCC
Confidence            33      2                3446789999998          6 444445678999998765

>3i2n_A WD repeat-containing protein 92; WD40 repeats, structural genomics, structural genomic consortium, SGC, apoptosis, transcription; 1.95A {Homo sapiens}

Probab=98.53  E-value=2.2e-05  Score=63.07  Aligned_cols=185  Identities=8%  Similarity=-0.068  Sum_probs=106.7

Q ss_pred             CcccEEEcCC---C-cEEEEeCCCcEEEEcc-CCc--eeEecccCCccccce------EEccCCCEEEEEeCCCcEEEEe
Q 026118           11 HPEDVSVDGN---G-VLYTATGDGWIKRMHP-NGT--WEDWHQVGSQSLLGL------TTTKENNVIIVCDSQQGLLKVS   77 (243)
Q Consensus        11 ~p~~i~~d~~---g-~l~~~~~~~~i~~~~~-~g~--~~~~~~~~~~~~~~i------~~~~~g~l~~v~~~~~gl~~~~   77 (243)
                      ...++++.++   | .|+++..++.|..++. .++  ...+........ .+      ++++++++++++...+.+..++
T Consensus        67 ~v~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~-~~~~~~~~~~s~~~~~l~~~~~d~~i~vwd  145 (357)
T 3i2n_A           67 PIKCGTFGATSLQQRYLATGDFGGNLHIWNLEAPEMPVYSVKGHKEIIN-AIDGIGGLGIGEGAPEIVTGSRDGTVKVWD  145 (357)
T ss_dssp             CEEEEECTTCCTTTCCEEEEETTSCEEEECTTSCSSCSEEECCCSSCEE-EEEEESGGGCC-CCCEEEEEETTSCEEEEC
T ss_pred             cEEEEEEcCCCCCCceEEEecCCCeEEEEeCCCCCccEEEEEecccceE-EEeeccccccCCCccEEEEEeCCCeEEEEe
Confidence            3456777776   4 5667778899999983 333  333322222222 45      4578888866666656677888


Q ss_pred             -cCC---cEEEEeccCCCcccCCccEE----EcCCCcEEEEeCCCCCCcccccccccccCCCceEEEEeCCCCeeEEeec
Q 026118           78 -EEG---VTVLVSQFNGSQLRFANDVI----EASDGSLYFTVSSTKFTPAEYYLDLVSGEPHGVLLKYDPSTNQTSLVLD  149 (243)
Q Consensus        78 -~~g---~~~~~~~~~~~~~~~~~~l~----~d~~G~l~v~~~~~~~~~~~~~~~~~~~~~~g~v~~~~~~~~~~~~~~~  149 (243)
                       .++   ...+. ...+.....+.+++    ++++++++++..                 ..+.|..+|..+++......
T Consensus       146 ~~~~~~~~~~~~-~~~~~~~~~v~~~~~~~~~~~~~~~l~~~~-----------------~d~~i~i~d~~~~~~~~~~~  207 (357)
T 3i2n_A          146 PRQKDDPVANME-PVQGENKRDCWTVAFGNAYNQEERVVCAGY-----------------DNGDIKLFDLRNMALRWETN  207 (357)
T ss_dssp             TTSCSSCSEEEC-CCTTSCCCCEEEEEEECCCC-CCCEEEEEE-----------------TTSEEEEEETTTTEEEEEEE
T ss_pred             CCCCCCcceecc-ccCCCCCCceEEEEEEeccCCCCCEEEEEc-----------------cCCeEEEEECccCceeeecC
Confidence             443   22222 11221122444555    567888766532                 23678899998887655544


Q ss_pred             cccccceEEEcC---CCCEEEEEEcCCCeEEEEEeecCCC-cceEEe-ccCCCCCCCceEECCCCC-EEEEE
Q 026118          150 GLYFANGVALSE---DERFLVVCESWKFRCVKHFLKVSGR-TDREIF-IDNLPGGPDNVNLARDGS-FWISI  215 (243)
Q Consensus       150 ~~~~~~gi~~~~---dg~~l~v~~~~~~~i~~~~~~~~~~-~~~~~~-~~~~~~~~~~i~~d~~G~-lwv~~  215 (243)
                      .......++++|   +++.++++ ..++.|..|+...... ...... ..........+++.++|+ +.++.
T Consensus       208 ~~~~v~~~~~~~~~~~~~~l~~~-~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~  278 (357)
T 3i2n_A          208 IKNGVCSLEFDRKDISMNKLVAT-SLEGKFHVFDMRTQHPTKGFASVSEKAHKSTVWQVRHLPQNRELFLTA  278 (357)
T ss_dssp             CSSCEEEEEESCSSSSCCEEEEE-ESTTEEEEEEEEEEETTTEEEEEEEECCSSCEEEEEEETTEEEEEEEE
T ss_pred             CCCceEEEEcCCCCCCCCEEEEE-CCCCeEEEEeCcCCCcccceeeeccCCCcCCEEEEEECCCCCcEEEEE
Confidence            445678899999   88866666 4678899999874321 111110 001223345577888876 44433

>3o4h_A Acylamino-acid-releasing enzyme; alpha/beta hydrolase fold, beta propeller, hydrolase, oligop SIZE selectivity; HET: GOL; 1.82A {Aeropyrum pernix} PDB: 3o4i_A 3o4j_A 2hu5_A* 1ve7_A* 1ve6_A* 2hu7_A* 3o4g_A 2hu8_A* 2qr5_A 2qzp_A

Probab=98.52  E-value=2.9e-06  Score=73.76  Aligned_cols=167  Identities=16%  Similarity=0.121  Sum_probs=97.9

Q ss_pred             EEEcCCC--cEEEEeCCCcEEEEc-cCCceeEecccCCccccceEEccCCCEEEEEeCC----CcEEEEe-cCC-cEEEE
Q 026118           15 VSVDGNG--VLYTATGDGWIKRMH-PNGTWEDWHQVGSQSLLGLTTTKENNVIIVCDSQ----QGLLKVS-EEG-VTVLV   85 (243)
Q Consensus        15 i~~d~~g--~l~~~~~~~~i~~~~-~~g~~~~~~~~~~~~~~~i~~~~~g~l~~v~~~~----~gl~~~~-~~g-~~~~~   85 (243)
                      +++.++|  .+|++...+.+..++ .+++.+.......  . .++++|||++++.+...    ..|+.++ .++ .+.+.
T Consensus       115 ~~~s~dg~~~~~~s~~~~~~~l~d~~~g~~~~l~~~~~--~-~~~~spDG~~la~~~~~~~~~~~i~~~d~~~g~~~~l~  191 (582)
T 3o4h_A          115 LSGVDTGEAVVFTGATEDRVALYALDGGGLRELARLPG--F-GFVSDIRGDLIAGLGFFGGGRVSLFTSNLSSGGLRVFD  191 (582)
T ss_dssp             EEEEECSSCEEEEEECSSCEEEEEEETTEEEEEEEESS--C-EEEEEEETTEEEEEEEEETTEEEEEEEETTTCCCEEEC
T ss_pred             eeeCCCCCeEEEEecCCCCceEEEccCCcEEEeecCCC--c-eEEECCCCCEEEEEEEcCCCCeEEEEEcCCCCCceEee
Confidence            3444444  566665555566667 4555544433222  4 88999999984434332    3488888 666 55443


Q ss_pred             eccCCCcccCCccEEEcCCCcEEEEeCCCCCCcccccccccccCCCceEEEEeCCCCeeEEeecc-ccccceEE------
Q 026118           86 SQFNGSQLRFANDVIEASDGSLYFTVSSTKFTPAEYYLDLVSGEPHGVLLKYDPSTNQTSLVLDG-LYFANGVA------  158 (243)
Q Consensus        86 ~~~~~~~~~~~~~l~~d~~G~l~v~~~~~~~~~~~~~~~~~~~~~~g~v~~~~~~~~~~~~~~~~-~~~~~gi~------  158 (243)
                      ..     ......++++|||+..++...               .....|+++|.++++.+ .... ...+.+++      
T Consensus       192 ~~-----~~~~~~~~~SpDG~~l~~~~~---------------~~~~~i~~~d~~~~~~~-~~~~~~~~~~~~~~~~~~~  250 (582)
T 3o4h_A          192 SG-----EGSFSSASISPGMKVTAGLET---------------AREARLVTVDPRDGSVE-DLELPSKDFSSYRPTAITW  250 (582)
T ss_dssp             CS-----SCEEEEEEECTTSCEEEEEEC---------------SSCEEEEEECTTTCCEE-ECCCSCSHHHHHCCSEEEE
T ss_pred             cC-----CCccccceECCCCCEEEEccC---------------CCeeEEEEEcCCCCcEE-EccCCCcChhhhhhccccc
Confidence            21     123467899999986554211               11237999999988877 4332 22234455      


Q ss_pred             --EcCCCCEEEEEEcCCCeEEEEEeecCCCcceEEeccCCCCCCCceEECCCCCEEEEE
Q 026118          159 --LSEDERFLVVCESWKFRCVKHFLKVSGRTDREIFIDNLPGGPDNVNLARDGSFWISI  215 (243)
Q Consensus       159 --~~~dg~~l~v~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~i~~d~~G~lwv~~  215 (243)
                        |+|||+ ++++...++.+..|+. +    +...   ...+....++++ +|++++..
T Consensus       251 ~~~spdg~-~~~~~~~~g~~~l~~~-g----~~~~---~~~~~v~~~~~s-dg~~l~~~  299 (582)
T 3o4h_A          251 LGYLPDGR-LAVVARREGRSAVFID-G----ERVE---APQGNHGRVVLW-RGKLVTSH  299 (582)
T ss_dssp             EEECTTSC-EEEEEEETTEEEEEET-T----EEEC---CCSSEEEEEEEE-TTEEEEEE
T ss_pred             eeEcCCCc-EEEEEEcCCcEEEEEE-C----Ceec---cCCCceEEEEec-CCEEEEEE
Confidence              999996 7776666677777776 2    1111   112334467777 77765543

>3fm0_A Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD repeat, biosynthetic prote structural genomics, structural genomics consortium; 1.70A {Homo sapiens}

Probab=98.52  E-value=0.00013  Score=59.13  Aligned_cols=151  Identities=12%  Similarity=0.061  Sum_probs=91.4

Q ss_pred             CcccEEEcCCCc-EEEEeCCCcEEEEcc-CCcee---EecccCCccccceEEccCCCEEEEEeCCCcEEEEe-cCC--cE
Q 026118           11 HPEDVSVDGNGV-LYTATGDGWIKRMHP-NGTWE---DWHQVGSQSLLGLTTTKENNVIIVCDSQQGLLKVS-EEG--VT   82 (243)
Q Consensus        11 ~p~~i~~d~~g~-l~~~~~~~~i~~~~~-~g~~~---~~~~~~~~~~~~i~~~~~g~l~~v~~~~~gl~~~~-~~g--~~   82 (243)
                      .-.++++.++|. |..+..++.+..++. .+...   .+........ +++++++|++|..+..++.+..++ .++  ..
T Consensus        63 ~v~~~~~sp~g~~l~s~s~D~~v~iw~~~~~~~~~~~~~~~h~~~v~-~v~~sp~~~~l~s~s~D~~v~iwd~~~~~~~~  141 (345)
T 3fm0_A           63 TVRKVAWSPCGNYLASASFDATTCIWKKNQDDFECVTTLEGHENEVK-SVAWAPSGNLLATCSRDKSVWVWEVDEEDEYE  141 (345)
T ss_dssp             CEEEEEECTTSSEEEEEETTSCEEEEEECCC-EEEEEEECCCSSCEE-EEEECTTSSEEEEEETTSCEEEEEECTTSCEE
T ss_pred             cEEEEEECCCCCEEEEEECCCcEEEEEccCCCeEEEEEccCCCCCce-EEEEeCCCCEEEEEECCCeEEEEECCCCCCeE
Confidence            456788999886 445557888888873 33322   2221122334 899999999866666656677777 444  22


Q ss_pred             EEEeccCCCcccCCccEEEcCCCcEEEEeCCCCCCcccccccccccCCCceEEEEeCCCCeeEE---eeccccccceEEE
Q 026118           83 VLVSQFNGSQLRFANDVIEASDGSLYFTVSSTKFTPAEYYLDLVSGEPHGVLLKYDPSTNQTSL---VLDGLYFANGVAL  159 (243)
Q Consensus        83 ~~~~~~~~~~~~~~~~l~~d~~G~l~v~~~~~~~~~~~~~~~~~~~~~~g~v~~~~~~~~~~~~---~~~~~~~~~gi~~  159 (243)
                      .+.. ..+ ....+.++++.|+|+++++.+.                 .+.|..++..+++...   +.........++|
T Consensus       142 ~~~~-~~~-h~~~v~~~~~~p~~~~l~s~s~-----------------d~~i~~w~~~~~~~~~~~~~~~h~~~v~~l~~  202 (345)
T 3fm0_A          142 CVSV-LNS-HTQDVKHVVWHPSQELLASASY-----------------DDTVKLYREEEDDWVCCATLEGHESTVWSLAF  202 (345)
T ss_dssp             EEEE-ECC-CCSCEEEEEECSSSSCEEEEET-----------------TSCEEEEEEETTEEEEEEEECCCSSCEEEEEE
T ss_pred             EEEE-ecC-cCCCeEEEEECCCCCEEEEEeC-----------------CCcEEEEEecCCCEEEEEEecCCCCceEEEEE
Confidence            2221 111 1234668899999987665322                 2345555555454332   2223345678999


Q ss_pred             cCCCCEEEEEEcCCCeEEEEEee
Q 026118          160 SEDERFLVVCESWKFRCVKHFLK  182 (243)
Q Consensus       160 ~~dg~~l~v~~~~~~~i~~~~~~  182 (243)
                      +|+|++|..+ ..++.|..++..
T Consensus       203 sp~g~~l~s~-s~D~~v~iW~~~  224 (345)
T 3fm0_A          203 DPSGQRLASC-SDDRTVRIWRQY  224 (345)
T ss_dssp             CTTSSEEEEE-ETTSCEEEEEEE
T ss_pred             CCCCCEEEEE-eCCCeEEEeccc
Confidence            9999965554 567788888764

>2mad_H Methylamine dehydrogenase (heavy subunit); oxidoreductase(CHNH2(D)-deaminating); HET: TRQ; 2.25A {Paracoccus versutus} SCOP: b.69.2.1 PDB: 1mae_H* 1maf_H*

Probab=98.51  E-value=6.4e-05  Score=61.91  Aligned_cols=78  Identities=10%  Similarity=-0.099  Sum_probs=54.1

Q ss_pred             EEEcCCC-cEEEEeCCCCCCcccccccccccCCCceEEEEeCCCCeeEEeeccccccceEEEcCCCC-EEEEEEcCCCeE
Q 026118           99 VIEASDG-SLYFTVSSTKFTPAEYYLDLVSGEPHGVLLKYDPSTNQTSLVLDGLYFANGVALSEDER-FLVVCESWKFRC  176 (243)
Q Consensus        99 l~~d~~G-~l~v~~~~~~~~~~~~~~~~~~~~~~g~v~~~~~~~~~~~~~~~~~~~~~gi~~~~dg~-~l~v~~~~~~~i  176 (243)
                      ++++++| ++|++......+        ......+.|+.+|.++++...-......|.+|++++||+ .+|+++...+.|
T Consensus       272 ~~~s~d~~~lyV~~~~~~~~--------~~~~~~~~V~VID~~t~~vv~~i~~g~~p~~i~~s~Dg~~~l~v~~~~~~~V  343 (373)
T 2mad_H          272 VAYLKSSDGIYLLTSEQSAW--------KLHAAAKEVTSVTGLVGQTSSQISLGHDVDAISVAQDGGPDLYALSAGTEVL  343 (373)
T ss_pred             EEECCCCCEEEEEeccCCcc--------cccCCCCeEEEEECCCCEEEEEEECCCCcCeEEECCCCCeEEEEEcCCCCeE
Confidence            7788876 588875321000        000123579999999887754444345699999999999 788887678899


Q ss_pred             EEEEeecC
Q 026118          177 VKHFLKVS  184 (243)
Q Consensus       177 ~~~~~~~~  184 (243)
                      ..||....
T Consensus       344 ~ViD~~t~  351 (373)
T 2mad_H          344 HIYDAGAG  351 (373)
T ss_pred             EEEECCCC
Confidence            99998753

>1vyh_C Platelet-activating factor acetylhydrolase IB alpha subunit; lissencephaly, platelet activacting factor, regulator of cytoplasmic dynein; 3.4A {Mus musculus} SCOP: b.69.4.1

Probab=98.51  E-value=6.4e-05  Score=62.44  Aligned_cols=179  Identities=13%  Similarity=0.110  Sum_probs=107.1

Q ss_pred             CcccEEEcCCCcEE-EEeCCCcEEEEcc-CCceeE-ecccCCccccceEEccCCCEEEEEeCCCcEEEEe-cCC--cEEE
Q 026118           11 HPEDVSVDGNGVLY-TATGDGWIKRMHP-NGTWED-WHQVGSQSLLGLTTTKENNVIIVCDSQQGLLKVS-EEG--VTVL   84 (243)
Q Consensus        11 ~p~~i~~d~~g~l~-~~~~~~~i~~~~~-~g~~~~-~~~~~~~~~~~i~~~~~g~l~~v~~~~~gl~~~~-~~g--~~~~   84 (243)
                      ...++++.++|.+. .+..++.|..++. .++... +........ +++++++|++++.+..++-+..++ .++  ...+
T Consensus       152 ~V~~v~~~~~~~~l~sgs~D~~i~iwd~~~~~~~~~~~~h~~~V~-~v~~~p~~~~l~s~s~D~~i~~wd~~~~~~~~~~  230 (410)
T 1vyh_C          152 SVQDISFDHSGKLLASCSADMTIKLWDFQGFECIRTMHGHDHNVS-SVSIMPNGDHIVSASRDKTIKMWEVQTGYCVKTF  230 (410)
T ss_dssp             CEEEEEECTTSSEEEEEETTSCCCEEETTSSCEEECCCCCSSCEE-EEEECSSSSEEEEEETTSEEEEEETTTCCEEEEE
T ss_pred             cEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCceeEEEcCCCCCEE-EEEEeCCCCEEEEEeCCCeEEEEECCCCcEEEEE
Confidence            34568888888644 5558888888884 333322 222122234 889999999856666555577777 666  2222


Q ss_pred             EeccCCCcccCCccEEEcCCCcEEEEeCCCCCCcccccccccccCCCceEEEEeCCCCeeEEee-ccccccceEEEcCC-
Q 026118           85 VSQFNGSQLRFANDVIEASDGSLYFTVSSTKFTPAEYYLDLVSGEPHGVLLKYDPSTNQTSLVL-DGLYFANGVALSED-  162 (243)
Q Consensus        85 ~~~~~~~~~~~~~~l~~d~~G~l~v~~~~~~~~~~~~~~~~~~~~~~g~v~~~~~~~~~~~~~~-~~~~~~~gi~~~~d-  162 (243)
                      ..     ....+..+.+.++|.++++.+                 ..+.|..+|..+++..... ........++|+|+ 
T Consensus       231 ~~-----h~~~v~~~~~~~~g~~l~s~s-----------------~D~~v~vwd~~~~~~~~~~~~h~~~v~~~~~~~~~  288 (410)
T 1vyh_C          231 TG-----HREWVRMVRPNQDGTLIASCS-----------------NDQTVRVWVVATKECKAELREHRHVVECISWAPES  288 (410)
T ss_dssp             EC-----CSSCEEEEEECTTSSEEEEEE-----------------TTSCEEEEETTTCCEEEEECCCSSCEEEEEECCSC
T ss_pred             eC-----CCccEEEEEECCCCCEEEEEc-----------------CCCeEEEEECCCCceeeEecCCCceEEEEEEcCcc
Confidence            21     123456788899998777632                 2346777777766554333 22334567788875 


Q ss_pred             -------------------CCEEEEEEcCCCeEEEEEeecCCCcceEEeccCCCCCCCceEECCCCCEEEEEe
Q 026118          163 -------------------ERFLVVCESWKFRCVKHFLKVSGRTDREIFIDNLPGGPDNVNLARDGSFWISII  216 (243)
Q Consensus       163 -------------------g~~l~v~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~i~~d~~G~lwv~~~  216 (243)
                                         |. ++++...++.|..||...+.  ....+. .-......++++++|++.++..
T Consensus       289 ~~~~~~~~~~~~~~~~~~~g~-~l~sgs~D~~i~iwd~~~~~--~~~~~~-~h~~~v~~v~~~~~g~~l~s~s  357 (410)
T 1vyh_C          289 SYSSISEATGSETKKSGKPGP-FLLSGSRDKTIKMWDVSTGM--CLMTLV-GHDNWVRGVLFHSGGKFILSCA  357 (410)
T ss_dssp             GGGGGGGCCSCC-------CC-EEEEEETTSEEEEEETTTTE--EEEEEE-CCSSCEEEEEECSSSSCEEEEE
T ss_pred             cccchhhhccccccccCCCCC-EEEEEeCCCeEEEEECCCCc--eEEEEE-CCCCcEEEEEEcCCCCEEEEEe
Confidence                               55 44444567889999976431  112221 2223456688888887554443

>1tl2_A L10, protein (tachylectin-2); animal lectin, horseshoe CRAB, N-acetylglucosamine, beta- propeller, sugar binding protein; HET: NDG; 2.00A {Tachypleus tridentatus} SCOP: b.67.1.1 PDB: 3kif_A* 3kih_A*

Probab=98.51  E-value=5.3e-06  Score=62.55  Aligned_cols=154  Identities=14%  Similarity=0.104  Sum_probs=92.3

Q ss_pred             ceecccccCCcccEEEcCCCcEEEEeCCCcEEEEcc-CCceeEeccc-------CCccccceEEccCCCEEEEEeCCCcE
Q 026118            2 IKLGEGIVNHPEDVSVDGNGVLYTATGDGWIKRMHP-NGTWEDWHQV-------GSQSLLGLTTTKENNVIIVCDSQQGL   73 (243)
Q Consensus         2 ~~~~~g~~~~p~~i~~d~~g~l~~~~~~~~i~~~~~-~g~~~~~~~~-------~~~~~~~i~~~~~g~l~~v~~~~~gl   73 (243)
                      .+++.+...+...++++|+|.||.. .++.+++.++ +.+-..|...       ..+-...+.+|++|.| |++. +..|
T Consensus        33 ~~iG~~gw~~~~~laf~P~G~LYaV-~~G~Ly~~~~~t~~~~~W~~s~t~IG~~Gw~~F~a~~fD~~G~L-Yav~-dG~i  109 (236)
T 1tl2_A           33 TLIGKGGWSNFKFLFLSPGGELYGV-LNDKIYKGTPPTHDNDNWMGRAKKIGNGGWNQFQFLFFDPNGYL-YAVS-KDKL  109 (236)
T ss_dssp             EEEESSSCTTCSEEEECTTSCEEEE-ETTEEEEESCCCSTTCCHHHHCEEEECSCGGGCSEEEECTTSCE-EEEE-TTEE
T ss_pred             cccCccccccceeEEECCCccEEEE-eCCeEEEECCCCCCcccccccccEecccccccceEEEECCCCCE-EEeC-CCEE
Confidence            4566655677889999999999988 7788999984 4322222211       1111236889999999 9884 4678


Q ss_pred             EEEe-cC-C-cEEEEe--ccCCCcccCCccEEEcCCCcEEEEeCCCCCCcccccccccccCCCceEEEEeCCCCe-----
Q 026118           74 LKVS-EE-G-VTVLVS--QFNGSQLRFANDVIEASDGSLYFTVSSTKFTPAEYYLDLVSGEPHGVLLKYDPSTNQ-----  143 (243)
Q Consensus        74 ~~~~-~~-g-~~~~~~--~~~~~~~~~~~~l~~d~~G~l~v~~~~~~~~~~~~~~~~~~~~~~g~v~~~~~~~~~-----  143 (243)
                      ++++ ++ + -..+..  .+-...-.....|.++|+|.||..+ .                  +.+|+-.+-++.     
T Consensus       110 yr~~pP~~~~~~Wl~~a~~vg~~gw~~~~~lff~p~G~Lyav~-d------------------g~lyr~~~P~~~~~~wl  170 (236)
T 1tl2_A          110 YKASPPQSDTDNWIARATEVGSGGWSGFKFLFFHPNGYLYAVH-G------------------QQFYKALPPVSNQDNWL  170 (236)
T ss_dssp             EEESCCCSTTCCHHHHSEEEECSSGGGEEEEEECTTSCEEEEE-T------------------TEEEEECCCSSTTCCHH
T ss_pred             EEeCCCcCCCCceeccccEeccCCCCceEEEEECCCceEEEEe-C------------------CcEEecCCCCCCCcccc
Confidence            8998 43 3 211111  0000011233578999999999985 3                  356654332111     


Q ss_pred             --eEEee-ccccccceEEEcCCCCEEEEEEcCCCeEEEEE
Q 026118          144 --TSLVL-DGLYFANGVALSEDERFLVVCESWKFRCVKHF  180 (243)
Q Consensus       144 --~~~~~-~~~~~~~gi~~~~dg~~l~v~~~~~~~i~~~~  180 (243)
                        ...+. .+...-.-+.++++|. ||...  ++.+++..
T Consensus       171 ~~~~~~g~~g~~~yr~l~f~~~G~-l~~v~--~g~~Y~~~  207 (236)
T 1tl2_A          171 ARATKIGQGGWDTFKFLFFSSVGT-LFGVQ--GGKFYEDY  207 (236)
T ss_dssp             HHCEEEESSSGGGEEEEEECTTSC-EEEEE--TTEEEEES
T ss_pred             cccceeccCCcceEEEEEECCCCc-EEEEe--CCeEEecC
Confidence              11121 2222223367899998 88776  67888764

>1sq9_A Antiviral protein SKI8; WD repeat, beta-transducin repeat, WD40 repeat, beta propeller, recombination; 1.90A {Saccharomyces cerevisiae} SCOP: b.69.4.1 PDB: 1s4u_X

Probab=98.51  E-value=2.6e-05  Score=63.83  Aligned_cols=184  Identities=12%  Similarity=-0.014  Sum_probs=110.7

Q ss_pred             cccEEEcCC----C---c-EEEEeCCCcEEEEc-cCCc------eeEeccc-----CCccccceEEc----cCCCE-EEE
Q 026118           12 PEDVSVDGN----G---V-LYTATGDGWIKRMH-PNGT------WEDWHQV-----GSQSLLGLTTT----KENNV-IIV   66 (243)
Q Consensus        12 p~~i~~d~~----g---~-l~~~~~~~~i~~~~-~~g~------~~~~~~~-----~~~~~~~i~~~----~~g~l-~~v   66 (243)
                      ..++++.++    |   . |+++..++.|..++ ..++      ...+...     ..... .++++    +++++ +++
T Consensus        65 v~~~~~~~~~~~~g~~~~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~v~-~~~~~~~~~~~~~~~l~~  143 (397)
T 1sq9_A           65 LHHVDVLQAIERDAFELCLVATTSFSGDLLFYRITREDETKKVIFEKLDLLDSDMKKHSFW-ALKWGASNDRLLSHRLVA  143 (397)
T ss_dssp             EEEEEEEEEEETTTEEEEEEEEEETTSCEEEEEEEECTTTCCEEEEEECCSCTTGGGSCEE-EEEEECCC----CEEEEE
T ss_pred             EEEEEEecccccCCccccEEEEEcCCCCEEEEEccCCcccccccceeecccccccCCCcEE-EEEEeeccCCCCceEEEE
Confidence            356788877    7   5 45556788898888 3333      3443322     13334 88999    89987 788


Q ss_pred             EeCCCcEEEEe-cC------C--cE-----EEEe--ccCCCcccCCccEEEcCCCcEEEEeCCCCCCcccccccccccCC
Q 026118           67 CDSQQGLLKVS-EE------G--VT-----VLVS--QFNGSQLRFANDVIEASDGSLYFTVSSTKFTPAEYYLDLVSGEP  130 (243)
Q Consensus        67 ~~~~~gl~~~~-~~------g--~~-----~~~~--~~~~~~~~~~~~l~~d~~G~l~v~~~~~~~~~~~~~~~~~~~~~  130 (243)
                      +...+.|..++ .+      +  ..     .+..  .........+.++++.++| ++++..                 .
T Consensus       144 ~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~-~l~~~~-----------------~  205 (397)
T 1sq9_A          144 TDVKGTTYIWKFHPFADESNSLTLNWSPTLELQGTVESPMTPSQFATSVDISERG-LIATGF-----------------N  205 (397)
T ss_dssp             EETTSCEEEEEEESSSSHHHHTTTCCCCEEEEEEEECCSSSSCCCCCEEEECTTS-EEEEEC-----------------T
T ss_pred             EeCCCcEEEEeCCccccccccceeeccCcceeeeeeccccCCCCCceEEEECCCc-eEEEEe-----------------C
Confidence            87666687887 55      3  32     2221  0001123457789999999 665532                 3


Q ss_pred             CceEEEEeCCCCeeEEeecc-------ccccceEEEcCCCCEEEEEEcCC---CeEEEEEeecCCCcceEEeccC-----
Q 026118          131 HGVLLKYDPSTNQTSLVLDG-------LYFANGVALSEDERFLVVCESWK---FRCVKHFLKVSGRTDREIFIDN-----  195 (243)
Q Consensus       131 ~g~v~~~~~~~~~~~~~~~~-------~~~~~gi~~~~dg~~l~v~~~~~---~~i~~~~~~~~~~~~~~~~~~~-----  195 (243)
                      .+.|..+|..+++.......       ......+++++++++|+++. .+   +.|..|+.....  ....+...     
T Consensus       206 dg~i~i~d~~~~~~~~~~~~~~~h~~~~~~i~~i~~~~~~~~l~~~~-~d~~~g~i~i~d~~~~~--~~~~~~~~~~~~~  282 (397)
T 1sq9_A          206 NGTVQISELSTLRPLYNFESQHSMINNSNSIRSVKFSPQGSLLAIAH-DSNSFGCITLYETEFGE--RIGSLSVPTHSSQ  282 (397)
T ss_dssp             TSEEEEEETTTTEEEEEEECCC---CCCCCEEEEEECSSTTEEEEEE-EETTEEEEEEEETTTCC--EEEEECBC-----
T ss_pred             CCcEEEEECCCCceeEEEeccccccccCCccceEEECCCCCEEEEEe-cCCCCceEEEEECCCCc--ccceeccCccccc
Confidence            46788899887765544433       45567899999999666654 45   689999876432  12222110     


Q ss_pred             -------CCCCCCceEECCCCCEEEEEec
Q 026118          196 -------LPGGPDNVNLARDGSFWISIIK  217 (243)
Q Consensus       196 -------~~~~~~~i~~d~~G~lwv~~~~  217 (243)
                             .......++++++|++.++...
T Consensus       283 ~~~~~~~~~~~v~~~~~~~~~~~l~~~~~  311 (397)
T 1sq9_A          283 ASLGEFAHSSWVMSLSFNDSGETLCSAGW  311 (397)
T ss_dssp             ---CCBSBSSCEEEEEECSSSSEEEEEET
T ss_pred             ccccccccCCcEEEEEECCCCCEEEEEeC
Confidence                   2234556888888886555443

>1vyh_C Platelet-activating factor acetylhydrolase IB alpha subunit; lissencephaly, platelet activacting factor, regulator of cytoplasmic dynein; 3.4A {Mus musculus} SCOP: b.69.4.1

Probab=98.50  E-value=6.9e-05  Score=62.26  Aligned_cols=150  Identities=11%  Similarity=0.073  Sum_probs=96.2

Q ss_pred             cccEEEcCCCcEE-EEeCCCcEEEEc-cCCceeE-ecccCCccccceEEccCCCEEEEEeCCCcEEEEe-cCCcEEEEec
Q 026118           12 PEDVSVDGNGVLY-TATGDGWIKRMH-PNGTWED-WHQVGSQSLLGLTTTKENNVIIVCDSQQGLLKVS-EEGVTVLVSQ   87 (243)
Q Consensus        12 p~~i~~d~~g~l~-~~~~~~~i~~~~-~~g~~~~-~~~~~~~~~~~i~~~~~g~l~~v~~~~~gl~~~~-~~g~~~~~~~   87 (243)
                      ..++++.+++.+. .+..++.|..++ ..++... +........ +++++++|++|..+..+.-+..++ .++. .+.. 
T Consensus       111 V~~~~~~p~~~~l~s~s~Dg~i~vwd~~~~~~~~~l~~h~~~V~-~v~~~~~~~~l~sgs~D~~i~iwd~~~~~-~~~~-  187 (410)
T 1vyh_C          111 VTRVIFHPVFSVMVSASEDATIKVWDYETGDFERTLKGHTDSVQ-DISFDHSGKLLASCSADMTIKLWDFQGFE-CIRT-  187 (410)
T ss_dssp             EEEEEECSSSSEEEEEESSSCEEEEETTTCCCCEEECCCSSCEE-EEEECTTSSEEEEEETTSCCCEEETTSSC-EEEC-
T ss_pred             EEEEEEcCCCCEEEEEeCCCeEEEEECCCCcEEEEEeccCCcEE-EEEEcCCCCEEEEEeCCCeEEEEeCCCCc-eeEE-
Confidence            4468888888655 555889999999 4554333 322222334 899999999856666555566777 4441 1111 


Q ss_pred             cCCCcccCCccEEEcCCCcEEEEeCCCCCCcccccccccccCCCceEEEEeCCCCeeEE-eeccccccceEEEcCCCCEE
Q 026118           88 FNGSQLRFANDVIEASDGSLYFTVSSTKFTPAEYYLDLVSGEPHGVLLKYDPSTNQTSL-VLDGLYFANGVALSEDERFL  166 (243)
Q Consensus        88 ~~~~~~~~~~~l~~d~~G~l~v~~~~~~~~~~~~~~~~~~~~~~g~v~~~~~~~~~~~~-~~~~~~~~~gi~~~~dg~~l  166 (243)
                      ..+ ....+.++++.|+|+++++.+                 ..+.|..+|..++.... +.........+.++++++.+
T Consensus       188 ~~~-h~~~V~~v~~~p~~~~l~s~s-----------------~D~~i~~wd~~~~~~~~~~~~h~~~v~~~~~~~~g~~l  249 (410)
T 1vyh_C          188 MHG-HDHNVSSVSIMPNGDHIVSAS-----------------RDKTIKMWEVQTGYCVKTFTGHREWVRMVRPNQDGTLI  249 (410)
T ss_dssp             CCC-CSSCEEEEEECSSSSEEEEEE-----------------TTSEEEEEETTTCCEEEEEECCSSCEEEEEECTTSSEE
T ss_pred             EcC-CCCCEEEEEEeCCCCEEEEEe-----------------CCCeEEEEECCCCcEEEEEeCCCccEEEEEECCCCCEE
Confidence            111 123567889999998777632                 24578888887776443 33333456778999999944


Q ss_pred             EEEEcCCCeEEEEEeec
Q 026118          167 VVCESWKFRCVKHFLKV  183 (243)
Q Consensus       167 ~v~~~~~~~i~~~~~~~  183 (243)
                      . +...++.|..++...
T Consensus       250 ~-s~s~D~~v~vwd~~~  265 (410)
T 1vyh_C          250 A-SCSNDQTVRVWVVAT  265 (410)
T ss_dssp             E-EEETTSCEEEEETTT
T ss_pred             E-EEcCCCeEEEEECCC
Confidence            4 445678899888754

>3dm0_A Maltose-binding periplasmic protein fused with RACK1; MBP RACK1A, receptor for activiated protein C-kinase 1, beta-propeller WD40 repeat; HET: GLC; 2.40A {Escherichia coli}

Probab=98.50  E-value=3.6e-05  Score=68.39  Aligned_cols=185  Identities=10%  Similarity=0.066  Sum_probs=111.3

Q ss_pred             CcccEEEcCCCcEE-EEeCCCcEEEEc-cCCcee-EecccCCccccceEEccCCCEEEEEeCCCcEEEEec-CCcE-EEE
Q 026118           11 HPEDVSVDGNGVLY-TATGDGWIKRMH-PNGTWE-DWHQVGSQSLLGLTTTKENNVIIVCDSQQGLLKVSE-EGVT-VLV   85 (243)
Q Consensus        11 ~p~~i~~d~~g~l~-~~~~~~~i~~~~-~~g~~~-~~~~~~~~~~~~i~~~~~g~l~~v~~~~~gl~~~~~-~g~~-~~~   85 (243)
                      .-.++++.++|.+. .+..++.|..++ ..++.. .+........ +++++++++++..+..++.|..++. .... .+.
T Consensus       432 ~v~~v~~s~~g~~l~sgs~Dg~v~vwd~~~~~~~~~~~~h~~~v~-~~~~s~~~~~l~s~s~D~~i~iwd~~~~~~~~~~  510 (694)
T 3dm0_A          432 FVEDVVLSSDGQFALSGSWDGELRLWDLAAGVSTRRFVGHTKDVL-SVAFSLDNRQIVSASRDRTIKLWNTLGECKYTIS  510 (694)
T ss_dssp             CEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEEEEECCSSCEE-EEEECTTSSCEEEEETTSCEEEECTTSCEEEEEC
T ss_pred             cEEEEEECCCCCEEEEEeCCCcEEEEECCCCcceeEEeCCCCCEE-EEEEeCCCCEEEEEeCCCEEEEEECCCCcceeec
Confidence            34568888888654 555889999998 444433 2322223334 8899999987566665555667773 3322 222


Q ss_pred             eccCCCcccCCccEEEcCCC--cEEEEeCCCCCCcccccccccccCCCceEEEEeCCCCeeEEeec-cccccceEEEcCC
Q 026118           86 SQFNGSQLRFANDVIEASDG--SLYFTVSSTKFTPAEYYLDLVSGEPHGVLLKYDPSTNQTSLVLD-GLYFANGVALSED  162 (243)
Q Consensus        86 ~~~~~~~~~~~~~l~~d~~G--~l~v~~~~~~~~~~~~~~~~~~~~~~g~v~~~~~~~~~~~~~~~-~~~~~~gi~~~~d  162 (243)
                      .... .....+.++++++++  .+.++.+                 ..+.|..+|..+++...... .......++++|+
T Consensus       511 ~~~~-~h~~~v~~~~~~~~~~~~~l~s~s-----------------~d~~v~vwd~~~~~~~~~~~~h~~~v~~v~~spd  572 (694)
T 3dm0_A          511 EGGE-GHRDWVSCVRFSPNTLQPTIVSAS-----------------WDKTVKVWNLSNCKLRSTLAGHTGYVSTVAVSPD  572 (694)
T ss_dssp             SSTT-SCSSCEEEEEECSCSSSCEEEEEE-----------------TTSCEEEEETTTCCEEEEECCCSSCEEEEEECTT
T ss_pred             cCCC-CCCCcEEEEEEeCCCCcceEEEEe-----------------CCCeEEEEECCCCcEEEEEcCCCCCEEEEEEeCC
Confidence            1111 112356788888876  3455422                 23567778887666554433 3345678999999


Q ss_pred             CCEEEEEEcCCCeEEEEEeecCCCcceEEeccCCCCCCCceEECCCCCEEEEEecCC
Q 026118          163 ERFLVVCESWKFRCVKHFLKVSGRTDREIFIDNLPGGPDNVNLARDGSFWISIIKMD  219 (243)
Q Consensus       163 g~~l~v~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~i~~d~~G~lwv~~~~~~  219 (243)
                      +++|. +...++.|..+|.....    .............+++++++.+.++....+
T Consensus       573 g~~l~-sg~~Dg~i~iwd~~~~~----~~~~~~~~~~v~~~~~sp~~~~l~~~~~~~  624 (694)
T 3dm0_A          573 GSLCA-SGGKDGVVLLWDLAEGK----KLYSLEANSVIHALCFSPNRYWLCAATEHG  624 (694)
T ss_dssp             SSEEE-EEETTSBCEEEETTTTE----EEECCBCSSCEEEEEECSSSSEEEEEETTE
T ss_pred             CCEEE-EEeCCCeEEEEECCCCc----eEEEecCCCcEEEEEEcCCCcEEEEEcCCC
Confidence            99444 54567889999875421    111111223355688888887766655443

>3lrv_A PRE-mRNA-splicing factor 19; PRP19, WD40, E3 ubiquitin ligase, spliceosome, DNA damage, D repair, mRNA processing, nucleus; 2.60A {Saccharomyces cerevisiae}

Probab=98.49  E-value=7.9e-05  Score=60.16  Aligned_cols=139  Identities=15%  Similarity=0.066  Sum_probs=85.3

Q ss_pred             ceEEcc--CCCEEEEEeCCCcEEEEe-cCC-cEEEEeccCCCcccCCccEEEcCCCcEEEEeCCCCCCcccccccccccC
Q 026118           54 GLTTTK--ENNVIIVCDSQQGLLKVS-EEG-VTVLVSQFNGSQLRFANDVIEASDGSLYFTVSSTKFTPAEYYLDLVSGE  129 (243)
Q Consensus        54 ~i~~~~--~g~l~~v~~~~~gl~~~~-~~g-~~~~~~~~~~~~~~~~~~l~~d~~G~l~v~~~~~~~~~~~~~~~~~~~~  129 (243)
                      .+++++  +++++..+..++.+..++ .++ ...+..   ......+.+++++|+|.++++.+                 
T Consensus       130 ~~~~~~~~~~~~l~s~s~dg~i~~wd~~~~~~~~~~~---~~~~~~i~~~~~~pdg~~lasg~-----------------  189 (343)
T 3lrv_A          130 YMYGHNEVNTEYFIWADNRGTIGFQSYEDDSQYIVHS---AKSDVEYSSGVLHKDSLLLALYS-----------------  189 (343)
T ss_dssp             EEECCC---CCEEEEEETTCCEEEEESSSSCEEEEEC---CCSSCCCCEEEECTTSCEEEEEC-----------------
T ss_pred             EEEcCCCCCCCEEEEEeCCCcEEEEECCCCcEEEEEe---cCCCCceEEEEECCCCCEEEEEc-----------------
Confidence            788999  999855566556677888 666 322221   11123467899999999887632                 


Q ss_pred             CCceEEEEeCCCCeeE--Eeec-cccccceEEEcCCCCEEEEEEcCCCeEEEEEeecCCC-cceEEeccCCCCCC---Cc
Q 026118          130 PHGVLLKYDPSTNQTS--LVLD-GLYFANGVALSEDERFLVVCESWKFRCVKHFLKVSGR-TDREIFIDNLPGGP---DN  202 (243)
Q Consensus       130 ~~g~v~~~~~~~~~~~--~~~~-~~~~~~gi~~~~dg~~l~v~~~~~~~i~~~~~~~~~~-~~~~~~~~~~~~~~---~~  202 (243)
                      ..+.|..+|..+++..  .+.. .......++|+|++++|..+. . +.|..+|+..... .....+.  ....+   ..
T Consensus       190 ~dg~i~iwd~~~~~~~~~~~~~~h~~~v~~l~fs~~g~~l~s~~-~-~~v~iwd~~~~~~~~~~~~~~--~~~~~~~~~~  265 (343)
T 3lrv_A          190 PDGILDVYNLSSPDQASSRFPVDEEAKIKEVKFADNGYWMVVEC-D-QTVVCFDLRKDVGTLAYPTYT--IPEFKTGTVT  265 (343)
T ss_dssp             TTSCEEEEESSCTTSCCEECCCCTTSCEEEEEECTTSSEEEEEE-S-SBEEEEETTSSTTCBSSCCCB--C-----CCEE
T ss_pred             CCCEEEEEECCCCCCCccEEeccCCCCEEEEEEeCCCCEEEEEe-C-CeEEEEEcCCCCcceeecccc--cccccccceE
Confidence            2457888888877644  3332 245567899999999777665 3 4899999865321 1111110  01112   23


Q ss_pred             eEECCCCCEEEEEe
Q 026118          203 VNLARDGSFWISII  216 (243)
Q Consensus       203 i~~d~~G~lwv~~~  216 (243)
                      ++++++|++.++..
T Consensus       266 ~~~~~~g~~l~~~s  279 (343)
T 3lrv_A          266 YDIDDSGKNMIAYS  279 (343)
T ss_dssp             EEECTTSSEEEEEE
T ss_pred             EEECCCCCEEEEec
Confidence            89999998666543

>3frx_A Guanine nucleotide-binding protein subunit beta- like protein; RACK1, WD40, beta propeller, ribosome, translation, acetylation; 2.13A {Saccharomyces cerevisiae} PDB: 3izb_a 3o2z_T 3o30_T 3u5c_g 3u5g_g 3rfg_A 3rfh_A 1trj_A 3jyv_R*

Probab=98.48  E-value=3.8e-05  Score=61.51  Aligned_cols=182  Identities=12%  Similarity=0.077  Sum_probs=105.8

Q ss_pred             CcccEEEcCCCc-EEEEeCCCcEEEEccCCc-eeEecccCCccccceEEcc------CCCEEEEEeCCCcEEEEe-cCC-
Q 026118           11 HPEDVSVDGNGV-LYTATGDGWIKRMHPNGT-WEDWHQVGSQSLLGLTTTK------ENNVIIVCDSQQGLLKVS-EEG-   80 (243)
Q Consensus        11 ~p~~i~~d~~g~-l~~~~~~~~i~~~~~~g~-~~~~~~~~~~~~~~i~~~~------~g~l~~v~~~~~gl~~~~-~~g-   80 (243)
                      ...++++.+++. |..+..++.|..++..++ ...+........ .+.+.+      ++.+++.+..++.+..++ .++ 
T Consensus       109 ~v~~~~~~~~~~~l~s~s~D~~i~vwd~~~~~~~~~~~h~~~v~-~~~~~~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~  187 (319)
T 3frx_A          109 DVMSVDIDKKASMIISGSRDKTIKVWTIKGQCLATLLGHNDWVS-QVRVVPNEKADDDSVTIISAGNDKMVKAWNLNQFQ  187 (319)
T ss_dssp             CEEEEEECTTSCEEEEEETTSCEEEEETTSCEEEEECCCSSCEE-EEEECCC------CCEEEEEETTSCEEEEETTTTE
T ss_pred             cEEEEEEcCCCCEEEEEeCCCeEEEEECCCCeEEEEeccCCcEE-EEEEccCCCCCCCccEEEEEeCCCEEEEEECCcch
Confidence            345678888876 445558888999985443 322222112223 566655      344546665555577777 444 


Q ss_pred             cEEEEeccCCCcccCCccEEEcCCCcEEEEeCCCCCCcccccccccccCCCceEEEEeCCCCeeEEeeccccccceEEEc
Q 026118           81 VTVLVSQFNGSQLRFANDVIEASDGSLYFTVSSTKFTPAEYYLDLVSGEPHGVLLKYDPSTNQTSLVLDGLYFANGVALS  160 (243)
Q Consensus        81 ~~~~~~~~~~~~~~~~~~l~~d~~G~l~v~~~~~~~~~~~~~~~~~~~~~~g~v~~~~~~~~~~~~~~~~~~~~~gi~~~  160 (243)
                      .....   .+ ....+.+++++|+|++.++.+                 ..+.|..+|..+++.............++|+
T Consensus       188 ~~~~~---~~-h~~~v~~~~~sp~g~~l~s~~-----------------~dg~i~iwd~~~~~~~~~~~~~~~v~~~~~s  246 (319)
T 3frx_A          188 IEADF---IG-HNSNINTLTASPDGTLIASAG-----------------KDGEIMLWNLAAKKAMYTLSAQDEVFSLAFS  246 (319)
T ss_dssp             EEEEE---CC-CCSCEEEEEECTTSSEEEEEE-----------------TTCEEEEEETTTTEEEEEEECCSCEEEEEEC
T ss_pred             hheee---cC-CCCcEEEEEEcCCCCEEEEEe-----------------CCCeEEEEECCCCcEEEEecCCCcEEEEEEc
Confidence            22111   11 123567889999999777632                 2457888898877655444444556789999


Q ss_pred             CCCCEEEEEEcCCCeEEEEEeecCCCcceEEeccC-------CCCCCCceEECCCCCEEEEEecC
Q 026118          161 EDERFLVVCESWKFRCVKHFLKVSGRTDREIFIDN-------LPGGPDNVNLARDGSFWISIIKM  218 (243)
Q Consensus       161 ~dg~~l~v~~~~~~~i~~~~~~~~~~~~~~~~~~~-------~~~~~~~i~~d~~G~lwv~~~~~  218 (243)
                      |++.++..+..  ..+..++.+....  ...+...       .......++++++|++.++....
T Consensus       247 p~~~~la~~~~--~~i~v~~~~~~~~--~~~~~~~~~~~~~~~~~~v~~~~~spdg~~l~sg~~D  307 (319)
T 3frx_A          247 PNRYWLAAATA--TGIKVFSLDPQYL--VDDLRPEFAGYSKAAEPHAVSLAWSADGQTLFAGYTD  307 (319)
T ss_dssp             SSSSEEEEEET--TEEEEEEETTEEE--EEEECCCCTTCCGGGCCCEEEEEECTTSSEEEEEETT
T ss_pred             CCCCEEEEEcC--CCcEEEEeCcCee--eeccCccccccccCcCcceeEEEECCCCCEEEEeecC
Confidence            99996666543  5677777653211  1111101       11123458999999866655443

>1k32_A Tricorn protease; protein degradation, substrate gating, serine protease, beta propeller, proteasome, hydrolase; 2.00A {Thermoplasma acidophilum} SCOP: b.36.1.3 b.68.7.1 b.69.9.1 c.14.1.2 PDB: 1n6e_A 1n6d_A 1n6f_A*

Probab=98.48  E-value=8.9e-06  Score=75.69  Aligned_cols=178  Identities=8%  Similarity=-0.031  Sum_probs=111.1

Q ss_pred             CcccEEEc-CCCc-EEEEeCCCcEEEEcc-CCceeEecccCC-ccccceEEccCCCEEEEEeCCCcEE-EEe-cCC-cEE
Q 026118           11 HPEDVSVD-GNGV-LYTATGDGWIKRMHP-NGTWEDWHQVGS-QSLLGLTTTKENNVIIVCDSQQGLL-KVS-EEG-VTV   83 (243)
Q Consensus        11 ~p~~i~~d-~~g~-l~~~~~~~~i~~~~~-~g~~~~~~~~~~-~~~~~i~~~~~g~l~~v~~~~~gl~-~~~-~~g-~~~   83 (243)
                      ...++++. ++|. |.++. .+.|+.++. .++......... ... .++++ +|+.++++.....++ .++ ..+ .+.
T Consensus       297 ~v~~~~~S~pdG~~la~~~-~~~i~~~~~~~~~~~~~~~~~~~~~~-~~~~s-dg~~l~~~s~~~~l~~~~d~~~~~~~~  373 (1045)
T 1k32_A          297 SKFAEDFSPLDGDLIAFVS-RGQAFIQDVSGTYVLKVPEPLRIRYV-RRGGD-TKVAFIHGTREGDFLGIYDYRTGKAEK  373 (1045)
T ss_dssp             GGGEEEEEECGGGCEEEEE-TTEEEEECTTSSBEEECSCCSCEEEE-EECSS-SEEEEEEEETTEEEEEEEETTTCCEEE
T ss_pred             ccceeeecCCCCCEEEEEE-cCEEEEEcCCCCceEEccCCCcceEE-eeeEc-CCCeEEEEECCCceEEEEECCCCCceE
Confidence            36789999 9995 54444 677888884 455444332222 334 67888 887645555455677 777 444 333


Q ss_pred             EEeccCCCcccCCccEEEcCCCcEEEEeCCCCCCcccccccccccCCCceEEEEeCCCCeeEEeecc-ccccceEEEcCC
Q 026118           84 LVSQFNGSQLRFANDVIEASDGSLYFTVSSTKFTPAEYYLDLVSGEPHGVLLKYDPSTNQTSLVLDG-LYFANGVALSED  162 (243)
Q Consensus        84 ~~~~~~~~~~~~~~~l~~d~~G~l~v~~~~~~~~~~~~~~~~~~~~~~g~v~~~~~~~~~~~~~~~~-~~~~~gi~~~~d  162 (243)
                      +.    + ....+..++++|||+..+..+                 ..+.|+.+|.++++...+... ......++|+||
T Consensus       374 l~----~-~~~~~~~~~~SpDG~~la~~~-----------------~~~~v~~~d~~tg~~~~~~~~~~~~v~~~~~SpD  431 (1045)
T 1k32_A          374 FE----E-NLGNVFAMGVDRNGKFAVVAN-----------------DRFEIMTVDLETGKPTVIERSREAMITDFTISDN  431 (1045)
T ss_dssp             CC----C-CCCSEEEEEECTTSSEEEEEE-----------------TTSEEEEEETTTCCEEEEEECSSSCCCCEEECTT
T ss_pred             ec----C-CccceeeeEECCCCCEEEEEC-----------------CCCeEEEEECCCCceEEeccCCCCCccceEECCC
Confidence            22    1 123456789999998554421                 234799999998888776533 334478999999


Q ss_pred             CCEEEEEEcCC---------CeEEEEEeecCCCcceEEeccCCCCCCCceEECCCCC-EEEEEec
Q 026118          163 ERFLVVCESWK---------FRCVKHFLKVSGRTDREIFIDNLPGGPDNVNLARDGS-FWISIIK  217 (243)
Q Consensus       163 g~~l~v~~~~~---------~~i~~~~~~~~~~~~~~~~~~~~~~~~~~i~~d~~G~-lwv~~~~  217 (243)
                      |++|.++....         ..|+.++.++.   ....+. ........++++++|+ |+++...
T Consensus       432 G~~la~~~~~~~~~~~~~~~~~i~l~d~~~g---~~~~l~-~~~~~~~~~~~spdG~~l~~~s~~  492 (1045)
T 1k32_A          432 SRFIAYGFPLKHGETDGYVMQAIHVYDMEGR---KIFAAT-TENSHDYAPAFDADSKNLYYLSYR  492 (1045)
T ss_dssp             SCEEEEEEEECSSTTCSCCEEEEEEEETTTT---EEEECS-CSSSBEEEEEECTTSCEEEEEESC
T ss_pred             CCeEEEEecCccccccCCCCCeEEEEECCCC---cEEEee-CCCcccCCceEcCCCCEEEEEecc
Confidence            99887665422         47888887653   222221 1122344578899998 6666543

>1nr0_A Actin interacting protein 1; beta propeller, WD40 repeat, ADF, cofilin, structural genomics, PSI, protein structure initiative; 1.70A {Caenorhabditis elegans} SCOP: b.69.4.1 b.69.4.1 PDB: 1pev_A

Probab=98.48  E-value=7.5e-06  Score=71.74  Aligned_cols=183  Identities=10%  Similarity=0.057  Sum_probs=106.2

Q ss_pred             CcccEEEcCCCcEEEEeCCCcEEEEccCCceeEecccCCccccceEEccCCCEEEEEeCCCcEEEEe-cCC-cEEEEecc
Q 026118           11 HPEDVSVDGNGVLYTATGDGWIKRMHPNGTWEDWHQVGSQSLLGLTTTKENNVIIVCDSQQGLLKVS-EEG-VTVLVSQF   88 (243)
Q Consensus        11 ~p~~i~~d~~g~l~~~~~~~~i~~~~~~g~~~~~~~~~~~~~~~i~~~~~g~l~~v~~~~~gl~~~~-~~g-~~~~~~~~   88 (243)
                      .|.++++.++|.+.+...++.+..++ .++..... ...... .++++|+|+++.++..++.|..++ .++ ...+.. .
T Consensus       413 ~~~~~~~s~dg~~~~~~~~~~v~~~~-~~~~~~~~-~~~~v~-~va~spdg~~lasgs~D~~v~lwd~~~~~~~~~~~-~  488 (611)
T 1nr0_A          413 QPLGLAVSADGDIAVAACYKHIAIYS-HGKLTEVP-ISYNSS-CVALSNDKQFVAVGGQDSKVHVYKLSGASVSEVKT-I  488 (611)
T ss_dssp             CEEEEEECTTSSCEEEEESSEEEEEE-TTEEEEEE-CSSCEE-EEEECTTSCEEEEEETTSEEEEEEEETTEEEEEEE-E
T ss_pred             CCcEEEEeCCCcEEEEEeCceEEEEe-CCceeeee-cCCCce-EEEEeCCCCEEEEeCCCCeEEEEEccCCceeeeec-c
Confidence            46678888888544433445566665 44433332 223345 899999999866666555566777 554 332222 1


Q ss_pred             CCCcccCCccEEEcCCCcEEEEeCCCCCCcccccccccccCCCceEEEEeCCC-CeeEEe--ec-cccccceEEEcCCCC
Q 026118           89 NGSQLRFANDVIEASDGSLYFTVSSTKFTPAEYYLDLVSGEPHGVLLKYDPST-NQTSLV--LD-GLYFANGVALSEDER  164 (243)
Q Consensus        89 ~~~~~~~~~~l~~d~~G~l~v~~~~~~~~~~~~~~~~~~~~~~g~v~~~~~~~-~~~~~~--~~-~~~~~~gi~~~~dg~  164 (243)
                      .  ....+.+++++|+|++.++.+.                 .+.|..++..+ ++....  .. .......++|+|||+
T Consensus       489 ~--h~~~v~~v~fspdg~~las~s~-----------------d~~v~~w~~~~~~~~~~~~~~~~H~~~V~~v~fspdg~  549 (611)
T 1nr0_A          489 V--HPAEITSVAFSNNGAFLVATDQ-----------------SRKVIPYSVANNFELAHTNSWTFHTAKVACVSWSPDNV  549 (611)
T ss_dssp             E--CSSCEEEEEECTTSSEEEEEET-----------------TSCEEEEEGGGTTEESCCCCCCCCSSCEEEEEECTTSS
T ss_pred             C--CCCceEEEEECCCCCEEEEEcC-----------------CCCEEEEEcCCCCceeeeeeeeecccceeEEEECCCCC
Confidence            1  1235778999999998776432                 24566666654 433221  11 234467899999999


Q ss_pred             EEEEEEcCCCeEEEEEeecCCCcceEEeccCC-CCCCCceEECCCCCEEEEEecC
Q 026118          165 FLVVCESWKFRCVKHFLKVSGRTDREIFIDNL-PGGPDNVNLARDGSFWISIIKM  218 (243)
Q Consensus       165 ~l~v~~~~~~~i~~~~~~~~~~~~~~~~~~~~-~~~~~~i~~d~~G~lwv~~~~~  218 (243)
                      +|..+ ..++.|..++.+.........+ ..- ......+++.++|+|..+..++
T Consensus       550 ~lasg-s~D~~v~lW~~~~~~~~~~~~~-~~h~~~~v~~v~fs~d~~l~s~~~D~  602 (611)
T 1nr0_A          550 RLATG-SLDNSVIVWNMNKPSDHPIIIK-GAHAMSSVNSVIWLNETTIVSAGQDS  602 (611)
T ss_dssp             EEEEE-ETTSCEEEEETTCTTSCCEEET-TSSTTSCEEEEEEEETTEEEEEETTS
T ss_pred             EEEEE-ECCCcEEEEECCCcccccchhh-ccCcccCeeEEEEcCCCEEEEecCCC
Confidence            55544 5678899999865321110121 111 2334567888888844444333

>3pe7_A Oligogalacturonate lyase; seven-bladed beta-propeller; 1.65A {Yersinia enterocolitica subsp}

Probab=98.47  E-value=5.6e-06  Score=67.79  Aligned_cols=168  Identities=11%  Similarity=0.034  Sum_probs=94.3

Q ss_pred             CcEEEEc-cCCceeEecccCCccccceEEcc-CCCEEEEEeCC------CcEEEEe-cCC-cEEEEeccCCCcccCCccE
Q 026118           30 GWIKRMH-PNGTWEDWHQVGSQSLLGLTTTK-ENNVIIVCDSQ------QGLLKVS-EEG-VTVLVSQFNGSQLRFANDV   99 (243)
Q Consensus        30 ~~i~~~~-~~g~~~~~~~~~~~~~~~i~~~~-~g~l~~v~~~~------~gl~~~~-~~g-~~~~~~~~~~~~~~~~~~l   99 (243)
                      ..|+.++ .+++...+........ .+.++| +|+.+.++...      ..|+.++ ..+ .+.+...   ........+
T Consensus       168 ~~l~~~d~~~g~~~~l~~~~~~~~-~~~~sp~dg~~l~~~~~~~~~~~~~~l~~~d~~~~~~~~l~~~---~~~~~~~~~  243 (388)
T 3pe7_A          168 CRLMRVDLKTGESTVILQENQWLG-HPIYRPYDDSTVAFCHEGPHDLVDARMWLINEDGTNMRKVKTH---AEGESCTHE  243 (388)
T ss_dssp             EEEEEEETTTCCEEEEEEESSCEE-EEEEETTEEEEEEEEECSCTTTSSCSEEEEETTSCCCEESCCC---CTTEEEEEE
T ss_pred             ceEEEEECCCCceEEeecCCcccc-ccEECCCCCCEEEEEEecCCCCCcceEEEEeCCCCceEEeeeC---CCCcccccc
Confidence            5688888 4566655543333334 788999 98864333322      2688888 444 4433221   111123456


Q ss_pred             EEcCCCc-EEEE-eCCCCCCcccccccccccCCCceEEEEeCCCCeeEEeeccc------cccceEEEcCCCCEEEEEE-
Q 026118          100 IEASDGS-LYFT-VSSTKFTPAEYYLDLVSGEPHGVLLKYDPSTNQTSLVLDGL------YFANGVALSEDERFLVVCE-  170 (243)
Q Consensus       100 ~~d~~G~-l~v~-~~~~~~~~~~~~~~~~~~~~~g~v~~~~~~~~~~~~~~~~~------~~~~gi~~~~dg~~l~v~~-  170 (243)
                      +++|||+ |++. ...              ......|+.+|.++++.+.+....      ..+.+++|+|||+.|+++. 
T Consensus       244 ~~spdg~~l~~~~~~~--------------~~~~~~l~~~d~~~g~~~~l~~~~~~~~~~~~~~~~~~spdg~~l~~~~~  309 (388)
T 3pe7_A          244 FWVPDGSALVYVSYLK--------------GSPDRFIYSADPETLENRQLTSMPACSHLMSNYDGSLMVGDGSDAPVDVQ  309 (388)
T ss_dssp             EECTTSSCEEEEEEET--------------TCCCEEEEEECTTTCCEEEEEEECCEEEEEECTTSSEEEEEECCC-----
T ss_pred             eECCCCCEEEEEecCC--------------CCCcceEEEEecCCCceEEEEcCCCceeeeecCCCCeEccCCCcceeEee
Confidence            8999997 5443 211              011235999999988876653211      1256678999999887653 


Q ss_pred             -------cCCCeEEEEEeecCCCcceEEeccCCC----------CCCCceEECCCCC-EEEEEecC
Q 026118          171 -------SWKFRCVKHFLKVSGRTDREIFIDNLP----------GGPDNVNLARDGS-FWISIIKM  218 (243)
Q Consensus       171 -------~~~~~i~~~~~~~~~~~~~~~~~~~~~----------~~~~~i~~d~~G~-lwv~~~~~  218 (243)
                             .....|+.++.+++..   +.+.....          .....++++++|+ |+++....
T Consensus       310 ~~~~~~~~~~~~i~~~d~~~~~~---~~l~~~~~~~~~~~~~~~~~~~~~~~spDg~~l~~~s~~~  372 (388)
T 3pe7_A          310 DDSGYKIENDPFLYVFNMKNGTQ---HRVARHDTSWKVFEGDRQVTHPHPSFTPDDKQILFTSDVH  372 (388)
T ss_dssp             -------CCCCEEEEEETTTTEE---EEEEECCCCCCCBTTBSSTTCCCCEECTTSSEEEEEECTT
T ss_pred             eccccccCCCCEEEEEeccCCce---EEeccccCcccccccccccCCCCccCCCCCCEEEEEecCC
Confidence                   3456899998775322   22221111          0245578899997 55555433

>3iz6_a 40S ribosomal protein RACK1 (RACK1); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum}

Probab=98.46  E-value=0.0001  Score=60.55  Aligned_cols=153  Identities=13%  Similarity=0.108  Sum_probs=95.3

Q ss_pred             cccEEEcC-CCcEE-EEeCCCcEEEEcc--CCc-eeEecccCCccccceEEccCCCEEEEEeCCCcEEEEe-cCC-cEEE
Q 026118           12 PEDVSVDG-NGVLY-TATGDGWIKRMHP--NGT-WEDWHQVGSQSLLGLTTTKENNVIIVCDSQQGLLKVS-EEG-VTVL   84 (243)
Q Consensus        12 p~~i~~d~-~g~l~-~~~~~~~i~~~~~--~g~-~~~~~~~~~~~~~~i~~~~~g~l~~v~~~~~gl~~~~-~~g-~~~~   84 (243)
                      ..++++.+ ++.++ .+..++.|..+|.  .++ ...+........ .++++|+|+++..+..++.+..+| .++ ....
T Consensus       208 v~~~~~~~~~~~~l~sgs~D~~v~~wd~~~~~~~~~~~~~h~~~v~-~v~~~p~~~~l~s~s~D~~i~lwd~~~~~~~~~  286 (380)
T 3iz6_a          208 VLSLSINSLNANMFISGSCDTTVRLWDLRITSRAVRTYHGHEGDIN-SVKFFPDGQRFGTGSDDGTCRLFDMRTGHQLQV  286 (380)
T ss_dssp             EEEEEECSSSCCEEEEEETTSCEEEEETTTTCCCCEEECCCSSCCC-EEEECTTSSEEEEECSSSCEEEEETTTTEEEEE
T ss_pred             eEEEEeecCCCCEEEEEECCCeEEEEECCCCCcceEEECCcCCCeE-EEEEecCCCeEEEEcCCCeEEEEECCCCcEEEE
Confidence            34566665 66555 5558889999983  222 333332223344 899999999845555445577777 666 3222


Q ss_pred             Ee-ccC--CCcccCCccEEEcCCCcEEEEeCCCCCCcccccccccccCCCceEEEEeCCCCeeEEee-----ccccccce
Q 026118           85 VS-QFN--GSQLRFANDVIEASDGSLYFTVSSTKFTPAEYYLDLVSGEPHGVLLKYDPSTNQTSLVL-----DGLYFANG  156 (243)
Q Consensus        85 ~~-~~~--~~~~~~~~~l~~d~~G~l~v~~~~~~~~~~~~~~~~~~~~~~g~v~~~~~~~~~~~~~~-----~~~~~~~g  156 (243)
                      .. ...  ......+.+++++++|++.++.+                 ..+.|+.+|..+++.....     ........
T Consensus       287 ~~~~~~~~~~~~~~v~~~~~s~~g~~l~~g~-----------------~dg~i~vwd~~~~~~~~~~~~~~~~h~~~v~~  349 (380)
T 3iz6_a          287 YNREPDRNDNELPIVTSVAFSISGRLLFAGY-----------------SNGDCYVWDTLLAEMVLNLGTLQNSHEGRISC  349 (380)
T ss_dssp             ECCCCSSSCCSSCSCSEEEECSSSSEEEEEC-----------------TTSCEEEEETTTCCEEEEECCSCSSCCCCCCE
T ss_pred             ecccccccccccCceEEEEECCCCCEEEEEE-----------------CCCCEEEEECCCCceEEEEecccCCCCCceEE
Confidence            21 111  11123467899999999877743                 2467888888766544322     12334678


Q ss_pred             EEEcCCCCEEEEEEcCCCeEEEEEeec
Q 026118          157 VALSEDERFLVVCESWKFRCVKHFLKV  183 (243)
Q Consensus       157 i~~~~dg~~l~v~~~~~~~i~~~~~~~  183 (243)
                      ++++|+|++| ++...++.|..+++.+
T Consensus       350 l~~s~dg~~l-~sgs~D~~i~iW~~~~  375 (380)
T 3iz6_a          350 LGLSSDGSAL-CTGSWDKNLKIWAFSG  375 (380)
T ss_dssp             EEECSSSSEE-EEECTTSCEEEEECCS
T ss_pred             EEECCCCCEE-EEeeCCCCEEEEecCC
Confidence            9999999955 4556778899888765

>3b7f_A Glycosyl hydrolase, BNR repeat; 7-bladed beta-propeller fold, structural genomics, joint CEN structural genomics, JCSG; 2.20A {Ralstonia eutropha}

Probab=98.46  E-value=1.5e-05  Score=65.98  Aligned_cols=182  Identities=13%  Similarity=0.116  Sum_probs=104.2

Q ss_pred             CcccEEEcC--CCcEEEEeCCC----cEEEEccCC-ceeEecccC---C----------ccccceEEcc---CCCEEEEE
Q 026118           11 HPEDVSVDG--NGVLYTATGDG----WIKRMHPNG-TWEDWHQVG---S----------QSLLGLTTTK---ENNVIIVC   67 (243)
Q Consensus        11 ~p~~i~~d~--~g~l~~~~~~~----~i~~~~~~g-~~~~~~~~~---~----------~~~~~i~~~~---~g~l~~v~   67 (243)
                      ...+|++|+  .++||++...+    +|++....| +++.+....   .          ....+|++++   .+.+ |++
T Consensus        56 ~v~~i~~dp~~~~~l~~g~~~g~~g~gl~~s~D~G~tW~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~l-~~g  134 (394)
T 3b7f_A           56 TIHHIVQDPREPERMLMAARTGHLGPTVFRSDDGGGNWTEATRPPAFNKAPEGETGRVVDHVFWLTPGHASEPGTW-YAG  134 (394)
T ss_dssp             EEEEEEECSSSTTCEEEEEEC--CCEEEEEESSTTSCCEECSBCCCCCCCC----CCCCCEEEEEEECCTTSTTCE-EEE
T ss_pred             ceEEEEECCCCCCeEEEEecCCCCCccEEEeCCCCCCceECCccccCCCcccccccccccceeEEEeCCCCCCCEE-EEE
Confidence            356799998  78999998666    788886444 455443210   0          0121577875   4666 998


Q ss_pred             eCCCcEEEEecCC--cEEEEeccC--------------CCcccCCccEEEcC--CCcEEEEeCCCCCCcccccccccccC
Q 026118           68 DSQQGLLKVSEEG--VTVLVSQFN--------------GSQLRFANDVIEAS--DGSLYFTVSSTKFTPAEYYLDLVSGE  129 (243)
Q Consensus        68 ~~~~gl~~~~~~g--~~~~~~~~~--------------~~~~~~~~~l~~d~--~G~l~v~~~~~~~~~~~~~~~~~~~~  129 (243)
                      ....+|++.++.|  .+.+.....              ......+..|++++  .+++|++..                 
T Consensus       135 ~~~ggl~~S~DgG~tW~~~~~~~~~p~~~~~~~~~~~g~~~~~~i~~i~~d~~~~~~l~vg~~-----------------  197 (394)
T 3b7f_A          135 TSPQGLFRSTDHGASWEPVAGFNDHPMRRAWTGGEQDGTPDGPKMHSILVDPRDPKHLYIGMS-----------------  197 (394)
T ss_dssp             EETTEEEEESSTTSBCEECHHHHTCTTHHHHHCCC----CCCCEEEEEEECTTCTTCEEEEEE-----------------
T ss_pred             ecCCcEEEEcCCCCCeEECcCccCCccccccccccccCCCCCCceeEEEECCCCCCEEEEEEC-----------------
Confidence            8777898887555  444321110              01112345788887  367999852                 


Q ss_pred             CCceEEEEeCCCCeeEEeeccc-------------cccceEEEcCC-CCEEEEEEcCCCeEEEEEeecCCCcceEEeccC
Q 026118          130 PHGVLLKYDPSTNQTSLVLDGL-------------YFANGVALSED-ERFLVVCESWKFRCVKHFLKVSGRTDREIFIDN  195 (243)
Q Consensus       130 ~~g~v~~~~~~~~~~~~~~~~~-------------~~~~gi~~~~d-g~~l~v~~~~~~~i~~~~~~~~~~~~~~~~~~~  195 (243)
                       .++|++.+..+..++.+....             .....|+++++ .+.||++..  +.|++.+-.+   ..++.+...
T Consensus       198 -~ggl~~s~DgG~tW~~~~~~~~~~~~p~~~~~~g~~~~~i~~~~~~~~~l~vg~~--~gl~~s~D~G---~tW~~~~~~  271 (394)
T 3b7f_A          198 -SGGVFESTDAGTDWKPLNRGCAANFLPDPNVEFGHDPHCVVQHPAAPDILYQQNH--CGIYRMDRRE---GVWKRIGDA  271 (394)
T ss_dssp             -TBEEEEESSTTSSCEECCTTCCCTTSSSSSSSSCBCEEEEEECSSSTTEEEEEET--TEEEEEETTT---TEEECGGGG
T ss_pred             -CCCEEEECCCCCCceECCCCccccccCCCccccCcceeEEEECCCCCCEEEEEcC--CeEEEeCCCC---CcceECCCC
Confidence             246888876655666543211             12456888885 356898753  5687765222   222222211


Q ss_pred             CC----CCCCceEEC--CCCCEEEEEe
Q 026118          196 LP----GGPDNVNLA--RDGSFWISII  216 (243)
Q Consensus       196 ~~----~~~~~i~~d--~~G~lwv~~~  216 (243)
                      .+    .+...|+++  ..+.||+++.
T Consensus       272 l~~~~~~~~~~i~~~p~~~~~l~~~t~  298 (394)
T 3b7f_A          272 MPREVGDIGFPIVVHQRDPRTVWVFPM  298 (394)
T ss_dssp             SCTTTCSCEEEEEECSSCTTCEEEEEC
T ss_pred             CCCCCccceEEEEECCCCCCEEEEEec
Confidence            11    112246777  4567999863

>3jrp_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum; 2.60A {Saccharomyces cerevisiae}

Probab=98.45  E-value=6.7e-05  Score=60.72  Aligned_cols=184  Identities=14%  Similarity=0.123  Sum_probs=101.8

Q ss_pred             cccEEEcCC--Cc-EEEEeCCCcEEEEc-cCCce---eEecccCCccccceEEccC--CCEEEEEeCCCcEEEEe-cCC-
Q 026118           12 PEDVSVDGN--GV-LYTATGDGWIKRMH-PNGTW---EDWHQVGSQSLLGLTTTKE--NNVIIVCDSQQGLLKVS-EEG-   80 (243)
Q Consensus        12 p~~i~~d~~--g~-l~~~~~~~~i~~~~-~~g~~---~~~~~~~~~~~~~i~~~~~--g~l~~v~~~~~gl~~~~-~~g-   80 (243)
                      ..++++.++  +. |+.+..++.|..++ ..++.   ..+........ .++++++  +++++++...+.+..++ .++ 
T Consensus        58 v~~~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~v~-~~~~~~~~~~~~l~~~~~d~~i~v~d~~~~~  136 (379)
T 3jrp_A           58 VWRVDWAHPKFGTILASCSYDGKVLIWKEENGRWSQIAVHAVHSASVN-SVQWAPHEYGPLLLVASSDGKVSVVEFKENG  136 (379)
T ss_dssp             EEEEEECCGGGCSEEEEEETTSCEEEEEEETTEEEEEEEECCCSSCEE-EEEECCGGGCSEEEEEETTSEEEEEECCTTS
T ss_pred             EEEEEeCCCCCCCEEEEeccCCEEEEEEcCCCceeEeeeecCCCcceE-EEEeCCCCCCCEEEEecCCCcEEEEecCCCC
Confidence            446777654  65 55666888899998 45542   22221222334 8899988  88867776656677777 443 


Q ss_pred             -cEEEEeccCCCcccCCccEEEcC-------------CCcEEEEeCCCCCCcccccccccccCCCceEEEEeCCCCe--e
Q 026118           81 -VTVLVSQFNGSQLRFANDVIEAS-------------DGSLYFTVSSTKFTPAEYYLDLVSGEPHGVLLKYDPSTNQ--T  144 (243)
Q Consensus        81 -~~~~~~~~~~~~~~~~~~l~~d~-------------~G~l~v~~~~~~~~~~~~~~~~~~~~~~g~v~~~~~~~~~--~  144 (243)
                       .......  . ....+.++++.|             ++.++++.+                 ..+.|..+|..++.  .
T Consensus       137 ~~~~~~~~--~-~~~~v~~~~~~~~~~~~~~~~~~~~~~~~l~~~~-----------------~dg~i~i~d~~~~~~~~  196 (379)
T 3jrp_A          137 TTSPIIID--A-HAIGVNSASWAPATIEEDGEHNGTKESRKFVTGG-----------------ADNLVKIWKYNSDAQTY  196 (379)
T ss_dssp             CCCEEEEE--C-CTTCEEEEEECCCC----------CTTCEEEEEE-----------------TTSCEEEEEEETTTTEE
T ss_pred             ceeeEEec--C-CCCceEEEEEcCccccccccccCCCCCCEEEEEe-----------------CCCeEEEEEecCCCcce
Confidence             2222111  1 123456778888             577666532                 23456666554332  1


Q ss_pred             EE---eeccccccceEEEcCC---CCEEEEEEcCCCeEEEEEeecCCCcceEEeccC--CCCCCCceEECCCCCE-EEEE
Q 026118          145 SL---VLDGLYFANGVALSED---ERFLVVCESWKFRCVKHFLKVSGRTDREIFIDN--LPGGPDNVNLARDGSF-WISI  215 (243)
Q Consensus       145 ~~---~~~~~~~~~gi~~~~d---g~~l~v~~~~~~~i~~~~~~~~~~~~~~~~~~~--~~~~~~~i~~d~~G~l-wv~~  215 (243)
                      ..   +.........++++|+   +++|+.+ ..++.|..|+...............  .......++++++|++ ..+.
T Consensus       197 ~~~~~~~~h~~~v~~~~~sp~~~~~~~l~s~-~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~  275 (379)
T 3jrp_A          197 VLESTLEGHSDWVRDVAWSPTVLLRSYLASV-SQDRTCIIWTQDNEQGPWKKTLLKEEKFPDVLWRASWSLSGNVLALSG  275 (379)
T ss_dssp             EEEEEECCCSSCEEEEEECCCCSSSEEEEEE-ETTSCEEEEEESSTTSCCEEEESSSSCCSSCEEEEEECSSSCCEEEEE
T ss_pred             eeEEEEecccCcEeEEEECCCCCCCCeEEEE-eCCCEEEEEeCCCCCccceeeeeccccCCCcEEEEEEcCCCCEEEEec
Confidence            11   1222344678999999   7755544 5678899999875322112222111  2223445777777773 3343


Q ss_pred             ec
Q 026118          216 IK  217 (243)
Q Consensus       216 ~~  217 (243)
                      ..
T Consensus       276 ~d  277 (379)
T 3jrp_A          276 GD  277 (379)
T ss_dssp             SS
T ss_pred             CC
Confidence            33

>3odt_A Protein DOA1; ubiquitin, nuclear protein; HET: MSE MES; 1.35A {Saccharomyces cerevisiae}

Probab=98.45  E-value=3.6e-05  Score=60.67  Aligned_cols=183  Identities=10%  Similarity=0.065  Sum_probs=109.9

Q ss_pred             ccEEEcCCCcEEEEeCCCcEEEEccCCceeEecccCCccccceEEcc-CCCEEEEEeCCCcEEEEecCC-cEEEEeccCC
Q 026118           13 EDVSVDGNGVLYTATGDGWIKRMHPNGTWEDWHQVGSQSLLGLTTTK-ENNVIIVCDSQQGLLKVSEEG-VTVLVSQFNG   90 (243)
Q Consensus        13 ~~i~~d~~g~l~~~~~~~~i~~~~~~g~~~~~~~~~~~~~~~i~~~~-~g~l~~v~~~~~gl~~~~~~g-~~~~~~~~~~   90 (243)
                      .++.++ ...++++..++.|..++.......+........ .+.+.+ ++++++++...+.+..++... ...+.    .
T Consensus       108 ~~~~~~-~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~v~-~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~----~  181 (313)
T 3odt_A          108 CSLSFQ-DGVVISGSWDKTAKVWKEGSLVYNLQAHNASVW-DAKVVSFSENKFLTASADKTIKLWQNDKVIKTFS----G  181 (313)
T ss_dssp             EEEEEE-TTEEEEEETTSEEEEEETTEEEEEEECCSSCEE-EEEEEETTTTEEEEEETTSCEEEEETTEEEEEEC----S
T ss_pred             EEEEec-CCEEEEEeCCCCEEEEcCCcEEEecccCCCcee-EEEEccCCCCEEEEEECCCCEEEEecCceEEEEe----c
Confidence            345553 235666668888888872222333322222333 677766 778757776656677777322 22221    1


Q ss_pred             CcccCCccEEEcCCCcEEEEeCCCCCCcccccccccccCCCceEEEEeCCCCeeEEee-ccccccceEEEcCCCCEEEEE
Q 026118           91 SQLRFANDVIEASDGSLYFTVSSTKFTPAEYYLDLVSGEPHGVLLKYDPSTNQTSLVL-DGLYFANGVALSEDERFLVVC  169 (243)
Q Consensus        91 ~~~~~~~~l~~d~~G~l~v~~~~~~~~~~~~~~~~~~~~~~g~v~~~~~~~~~~~~~~-~~~~~~~gi~~~~dg~~l~v~  169 (243)
                      .....+.++++.+++.++.+.                  ..+.|..+|..+++..... ........++++++++ ++.+
T Consensus       182 ~~~~~i~~~~~~~~~~~~~~~------------------~dg~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~~-l~~~  242 (313)
T 3odt_A          182 IHNDVVRHLAVVDDGHFISCS------------------NDGLIKLVDMHTGDVLRTYEGHESFVYCIKLLPNGD-IVSC  242 (313)
T ss_dssp             SCSSCEEEEEEEETTEEEEEE------------------TTSEEEEEETTTCCEEEEEECCSSCEEEEEECTTSC-EEEE
T ss_pred             cCcccEEEEEEcCCCeEEEcc------------------CCCeEEEEECCchhhhhhhhcCCceEEEEEEecCCC-EEEE
Confidence            122456788899999855553                  2357888998877655433 3345567899999996 6655


Q ss_pred             EcCCCeEEEEEeecCCCcceEEeccCCCCCCCceEECCCCCEEEEEecCCchhhh
Q 026118          170 ESWKFRCVKHFLKVSGRTDREIFIDNLPGGPDNVNLARDGSFWISIIKMDPKGIQ  224 (243)
Q Consensus       170 ~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~i~~d~~G~lwv~~~~~~~~~~~  224 (243)
                       ..++.|..|+.....  ....+. ........+++.++|++.++...+....++
T Consensus       243 -~~dg~v~iwd~~~~~--~~~~~~-~~~~~i~~~~~~~~~~~~~~~~dg~i~iw~  293 (313)
T 3odt_A          243 -GEDRTVRIWSKENGS--LKQVIT-LPAISIWSVDCMSNGDIIVGSSDNLVRIFS  293 (313)
T ss_dssp             -ETTSEEEEECTTTCC--EEEEEE-CSSSCEEEEEECTTSCEEEEETTSCEEEEE
T ss_pred             -ecCCEEEEEECCCCc--eeEEEe-ccCceEEEEEEccCCCEEEEeCCCcEEEEe
Confidence             457889999876532  122222 222345668889999877766665544444

>3k26_A Polycomb protein EED; WD40, structural genomics, NPPSFA, national project on prote structural and functional analysis, structural genomics CON SGC; HET: M3L; 1.58A {Homo sapiens} PDB: 3jzn_A* 3k27_A* 3jpx_A* 3jzg_A* 3jzh_A* 3iiw_A* 3ijc_A* 3iiy_A* 3ij0_A* 3ij1_A* 2qxv_A

Probab=98.45  E-value=8.4e-05  Score=59.81  Aligned_cols=204  Identities=10%  Similarity=0.044  Sum_probs=110.8

Q ss_pred             cccEEEcCC----Cc-EEEEeCCCcEEEEc-cCCceeEecccCCccccceEEcc-CCCEEEEEeCCCcEEEEe-cCC-cE
Q 026118           12 PEDVSVDGN----GV-LYTATGDGWIKRMH-PNGTWEDWHQVGSQSLLGLTTTK-ENNVIIVCDSQQGLLKVS-EEG-VT   82 (243)
Q Consensus        12 p~~i~~d~~----g~-l~~~~~~~~i~~~~-~~g~~~~~~~~~~~~~~~i~~~~-~g~l~~v~~~~~gl~~~~-~~g-~~   82 (243)
                      ..++++.++    |. |.++..++.|..++ .+++..........+...+.+++ ++++++++..++.|..++ .++ ..
T Consensus        72 v~~~~~~~~~~~~~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~  151 (366)
T 3k26_A           72 FYTCAWTYDSNTSHPLLAVAGSRGIIRIINPITMQCIKHYVGHGNAINELKFHPRDPNLLLSVSKDHALRLWNIQTDTLV  151 (366)
T ss_dssp             EEEEEEEECTTTCCEEEEEEETTCEEEEECTTTCCEEEEEESCCSCEEEEEECSSCTTEEEEEETTSCEEEEETTTTEEE
T ss_pred             EEEEEeccCCCCCCCEEEEecCCCEEEEEEchhceEeeeecCCCCcEEEEEECCCCCCEEEEEeCCCeEEEEEeecCeEE
Confidence            456777766    54 55666888999998 44543332221223333899998 888856666656688888 666 22


Q ss_pred             EEEeccCCCcccCCccEEEcCCCcEEEEeCCCCCCccccccc--------------------------------------
Q 026118           83 VLVSQFNGSQLRFANDVIEASDGSLYFTVSSTKFTPAEYYLD--------------------------------------  124 (243)
Q Consensus        83 ~~~~~~~~~~~~~~~~l~~d~~G~l~v~~~~~~~~~~~~~~~--------------------------------------  124 (243)
                      ........ ....+.+++++++|+++++....+ .+..|+..                                      
T Consensus       152 ~~~~~~~~-~~~~v~~~~~~~~~~~l~~~~~dg-~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  229 (366)
T 3k26_A          152 AIFGGVEG-HRDEVLSADYDLLGEKIMSCGMDH-SLKLWRINSKRMMNAIKESYDYNPNKTNRPFISQKIHFPDFSTRDI  229 (366)
T ss_dssp             EEECSTTS-CSSCEEEEEECTTSSEEEEEETTS-CEEEEESCSHHHHHHHHHHHTCCGGGCSSCCCCEEECCCSEEECSS
T ss_pred             EEeccccc-ccCceeEEEECCCCCEEEEecCCC-CEEEEECCCCccccccceeEEecCCCCcccccceeeccCccccccC
Confidence            22211111 124566788888887665532211 01111100                                      


Q ss_pred             --------------ccccCCCceEEEEeCCCCee---------------EEeeccccccceEEEcCC--CCEEEEEEcCC
Q 026118          125 --------------LVSGEPHGVLLKYDPSTNQT---------------SLVLDGLYFANGVALSED--ERFLVVCESWK  173 (243)
Q Consensus       125 --------------~~~~~~~g~v~~~~~~~~~~---------------~~~~~~~~~~~gi~~~~d--g~~l~v~~~~~  173 (243)
                                    +......+.|..+|..+++.               ..+.........++++++  +++|+.+ ..+
T Consensus       230 ~~~~v~~~~~~~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~l~~~-~~d  308 (366)
T 3k26_A          230 HRNYVDCVRWLGDLILSKSCENAIVCWKPGKMEDDIDKIKPSESNVTILGRFDYSQCDIWYMRFSMDFWQKMLALG-NQV  308 (366)
T ss_dssp             CSSCCCEEEEETTEEEEECSSSEEEEEEESSTTCCGGGCCTTCCCEEEEEEEECSSCCSSCCCCEECTTSSEEEEE-CTT
T ss_pred             CcceEEEEEEcCCEEEEEecCCEEEEEeCCCccccccccccCCcchheeccccccCCcEEEEEEcCCCCCcEEEEE-ecC
Confidence                          11112244555555543321               111112233567888888  9956555 567


Q ss_pred             CeEEEEEeecCCCcc--eEEeccC-CCCCCCceEECCCCCEEEEEecC
Q 026118          174 FRCVKHFLKVSGRTD--REIFIDN-LPGGPDNVNLARDGSFWISIIKM  218 (243)
Q Consensus       174 ~~i~~~~~~~~~~~~--~~~~~~~-~~~~~~~i~~d~~G~lwv~~~~~  218 (243)
                      +.|..|+........  ...+... .......++++++|++.++....
T Consensus       309 g~i~vwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~d  356 (366)
T 3k26_A          309 GKLYVWDLEVEDPHKAKCTTLTHHKCGAAIRQTSFSRDSSILIAVCDD  356 (366)
T ss_dssp             SCEEEEECCSSSGGGCEEEEECCTTCCSCEEEEEECTTSSEEEEEETT
T ss_pred             CcEEEEECCCCCCccccceEEcccccCCceEEEEeCCCCCeEEEEeCC
Confidence            889999987543221  1122211 13446679999999866655443

>3dw8_B Serine/threonine-protein phosphatase 2A 55 kDa RE subunit B alpha isoform; holoenzyme, PR55, WD repeat, hydrolase, iron, manganese binding, methylation, phosphoprotein, protein phosphatase; HET: 1ZN; 2.85A {Homo sapiens}

Probab=98.44  E-value=8.4e-05  Score=61.81  Aligned_cols=155  Identities=10%  Similarity=0.052  Sum_probs=92.9

Q ss_pred             CCcccEEEcCCCcEEEEeCCCcEEEEccC--CceeE-e-------cccCCccccceEEccCC-CEEEEEeCCCcEEEEe-
Q 026118           10 NHPEDVSVDGNGVLYTATGDGWIKRMHPN--GTWED-W-------HQVGSQSLLGLTTTKEN-NVIIVCDSQQGLLKVS-   77 (243)
Q Consensus        10 ~~p~~i~~d~~g~l~~~~~~~~i~~~~~~--g~~~~-~-------~~~~~~~~~~i~~~~~g-~l~~v~~~~~gl~~~~-   77 (243)
                      ....++++.++|.++++..++.|..++..  ++... +       ........ .+++++++ ++++++...+.|..++ 
T Consensus       178 ~~v~~~~~~~~~~~l~s~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~-~~~~~p~~~~~l~s~~~dg~i~iwd~  256 (447)
T 3dw8_B          178 YHINSISINSDYETYLSADDLRINLWHLEITDRSFNIVDIKPANMEELTEVIT-AAEFHPNSCNTFVYSSSKGTIRLCDM  256 (447)
T ss_dssp             SCCCEEEECTTSSEEEEECSSEEEEEETTEEEEEEEEEECCCSSGGGCCCCEE-EEEECSSCTTEEEEEETTSCEEEEET
T ss_pred             cceEEEEEcCCCCEEEEeCCCeEEEEECCCCCceeeeeecccccccccCcceE-EEEECCCCCcEEEEEeCCCeEEEEEC
Confidence            34567899999876655578889999844  22221 1       11112234 88999998 7756666555677888 


Q ss_pred             cCC-c-----EEEEeccCCCc-------ccCCccEEEcCCCcEEEEeCCCCCCcccccccccccCCCceEEEEeCCC-Ce
Q 026118           78 EEG-V-----TVLVSQFNGSQ-------LRFANDVIEASDGSLYFTVSSTKFTPAEYYLDLVSGEPHGVLLKYDPST-NQ  143 (243)
Q Consensus        78 ~~g-~-----~~~~~~~~~~~-------~~~~~~l~~d~~G~l~v~~~~~~~~~~~~~~~~~~~~~~g~v~~~~~~~-~~  143 (243)
                      .++ .     ..+........       ...+.+++++++|+++++.+                 . +.|..+|..+ ++
T Consensus       257 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~-----------------~-~~v~iwd~~~~~~  318 (447)
T 3dw8_B          257 RASALCDRHSKLFEEPEDPSNRSFFSEIISSISDVKFSHSGRYMMTRD-----------------Y-LSVKVWDLNMENR  318 (447)
T ss_dssp             TTCSSSCTTCEEECCC-----CCHHHHHTTCEEEEEECTTSSEEEEEE-----------------S-SEEEEEETTCCSS
T ss_pred             cCCccccceeeEeccCCCccccccccccCceEEEEEECCCCCEEEEee-----------------C-CeEEEEeCCCCcc
Confidence            554 3     22221110000       01567899999998777621                 2 5777788764 43


Q ss_pred             eEEeeccccc----------------cceEEEcCCCCEEEEEEcCCCeEEEEEeecC
Q 026118          144 TSLVLDGLYF----------------ANGVALSEDERFLVVCESWKFRCVKHFLKVS  184 (243)
Q Consensus       144 ~~~~~~~~~~----------------~~gi~~~~dg~~l~v~~~~~~~i~~~~~~~~  184 (243)
                      ..........                ...++|++++++| ++...++.|..|+....
T Consensus       319 ~~~~~~~~~~~~~~l~~~~~~~~i~~~~~~~~s~~~~~l-~s~s~dg~v~iwd~~~~  374 (447)
T 3dw8_B          319 PVETYQVHEYLRSKLCSLYENDCIFDKFECCWNGSDSVV-MTGSYNNFFRMFDRNTK  374 (447)
T ss_dssp             CSCCEESCGGGTTTHHHHHHTSGGGCCCCEEECTTSSEE-EEECSTTEEEEEETTTC
T ss_pred             ccceeeccccccccccccccccccccceEEEECCCCCEE-EEeccCCEEEEEEcCCC
Confidence            2222211111                1238999999966 45567789999997653

>2xyi_A Probable histone-binding protein CAF1; transcription, repressor, phosphoprotein, WD-repeat; HET: PG4; 1.75A {Drosophila melanogaster} PDB: 3c99_A 3c9c_A 2yb8_B 2yba_A 2xu7_A* 3gfc_A 3cfs_B 3cfv_B

Probab=98.44  E-value=0.0001  Score=61.54  Aligned_cols=186  Identities=13%  Similarity=0.040  Sum_probs=109.9

Q ss_pred             CcccEEEcCC-Cc-EEEEeCCCcEEEEcc-C----------Cc-eeEecccCCccccceEEccCCC-EEEEEeCCCcEEE
Q 026118           11 HPEDVSVDGN-GV-LYTATGDGWIKRMHP-N----------GT-WEDWHQVGSQSLLGLTTTKENN-VIIVCDSQQGLLK   75 (243)
Q Consensus        11 ~p~~i~~d~~-g~-l~~~~~~~~i~~~~~-~----------g~-~~~~~~~~~~~~~~i~~~~~g~-l~~v~~~~~gl~~   75 (243)
                      .+.++++.++ +. |+++..++.|+.++. .          .+ ...+........ ++++++++. +|.++...+.|..
T Consensus       130 ~v~~l~~~p~~~~~lat~~~dg~V~vwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~-~l~~~~~~~~~l~s~~~dg~i~v  208 (430)
T 2xyi_A          130 EVNRARYMPQNACVIATKTPSSDVLVFDYTKHPSKPEPSGECQPDLRLRGHQKEGY-GLSWNPNLNGYLLSASDDHTICL  208 (430)
T ss_dssp             CCSEEEEETTEEEEEEEECSSSCEEEEEGGGSCSSCCTTCCCCCSEEEECCSSCCC-CEEECTTSTTEEEEECTTSCEEE
T ss_pred             cEEEEEECCCCCcEEEEECCCCcEEEEECCCcccccCccccCCCcEEecCCCCCeE-EEEeCCCCCCeEEEEeCCCeEEE
Confidence            5667889886 44 445557888988882 2          11 222222223345 899999887 6455555556777


Q ss_pred             Ee-cCC---cEEEE--eccCCCcccCCccEEEcC-CCcEEEEeCCCCCCcccccccccccCCCceEEEEeCCCCe----e
Q 026118           76 VS-EEG---VTVLV--SQFNGSQLRFANDVIEAS-DGSLYFTVSSTKFTPAEYYLDLVSGEPHGVLLKYDPSTNQ----T  144 (243)
Q Consensus        76 ~~-~~g---~~~~~--~~~~~~~~~~~~~l~~d~-~G~l~v~~~~~~~~~~~~~~~~~~~~~~g~v~~~~~~~~~----~  144 (243)
                      ++ ..+   ...+.  ....+ ....+.++++.+ ++.++++.+                 ..+.|..+|..++.    .
T Consensus       209 wd~~~~~~~~~~~~~~~~~~~-h~~~v~~v~~~p~~~~~l~s~~-----------------~dg~i~i~d~~~~~~~~~~  270 (430)
T 2xyi_A          209 WDINATPKEHRVIDAKNIFTG-HTAVVEDVAWHLLHESLFGSVA-----------------DDQKLMIWDTRNNNTSKPS  270 (430)
T ss_dssp             EETTSCCBGGGEEECSEEECC-CSSCEEEEEECSSCTTEEEEEE-----------------TTSEEEEEETTCSCSSSCS
T ss_pred             EeCCCCCCCCceeccceeecC-CCCCEeeeEEeCCCCCEEEEEe-----------------CCCeEEEEECCCCCCCcce
Confidence            77 442   11111  11111 123577889998 567776642                 24578888887552    2


Q ss_pred             EEeeccccccceEEEcCCCCEEEEEEcCCCeEEEEEeecCCCcceEEeccCCCCCCCceEECCCCC-EEEEEec
Q 026118          145 SLVLDGLYFANGVALSEDERFLVVCESWKFRCVKHFLKVSGRTDREIFIDNLPGGPDNVNLARDGS-FWISIIK  217 (243)
Q Consensus       145 ~~~~~~~~~~~gi~~~~dg~~l~v~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~i~~d~~G~-lwv~~~~  217 (243)
                      ..+......++.++|+|++++++++...++.|..|++..... ....+. ........+++.++|. ++++...
T Consensus       271 ~~~~~~~~~v~~i~~~p~~~~~l~tg~~dg~v~vwd~~~~~~-~~~~~~-~h~~~v~~i~~sp~~~~~l~s~~~  342 (430)
T 2xyi_A          271 HTVDAHTAEVNCLSFNPYSEFILATGSADKTVALWDLRNLKL-KLHSFE-SHKDEIFQVQWSPHNETILASSGT  342 (430)
T ss_dssp             EEEECCSSCEEEEEECSSCTTEEEEEETTSEEEEEETTCTTS-CSEEEE-CCSSCEEEEEECSSCTTEEEEEET
T ss_pred             eEeecCCCCeEEEEeCCCCCCEEEEEeCCCeEEEEeCCCCCC-CeEEee-cCCCCEEEEEECCCCCCEEEEEeC
Confidence            222233455788999999987777767788999999864211 112221 1223456688888885 5554443

>1pgu_A Actin interacting protein 1; WD repeat, seven-bladed beta-propeller, protein binding; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1 b.69.4.1 PDB: 1pi6_A

Probab=98.43  E-value=3.1e-05  Score=67.07  Aligned_cols=177  Identities=12%  Similarity=0.052  Sum_probs=103.1

Q ss_pred             cccEEEcCCCcEEEEeCCCcEEEEc-cCCceeEecccCCccccceEEccCCCEEEEEeC-CCcEEEEe-cCC-cEEEEec
Q 026118           12 PEDVSVDGNGVLYTATGDGWIKRMH-PNGTWEDWHQVGSQSLLGLTTTKENNVIIVCDS-QQGLLKVS-EEG-VTVLVSQ   87 (243)
Q Consensus        12 p~~i~~d~~g~l~~~~~~~~i~~~~-~~g~~~~~~~~~~~~~~~i~~~~~g~l~~v~~~-~~gl~~~~-~~g-~~~~~~~   87 (243)
                      |..+++.++|.+.+....+.+..++ .+++..........+. .++++  +++++++.. .+.+..++ .++ ...  ..
T Consensus       409 ~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~--~~~l~~~~~~d~~i~~~~~~~~~~~~--~~  483 (615)
T 1pgu_A          409 PKVASANNDGFTAVLTNDDDLLILQSFTGDIIKSVRLNSPGS-AVSLS--QNYVAVGLEEGNTIQVFKLSDLEVSF--DL  483 (615)
T ss_dssp             EEEEEECSSSEEEEEETTSEEEEEETTTCCEEEEEECSSCEE-EEEEC--SSEEEEEETTTSCEEEEETTEEEEEE--EC
T ss_pred             ceEEEEcCCCCEEEEeCCCceEEEeccCCceeeecccCCCce-EEEEc--CCEEEEeecCCCeEEEEECCCccccc--cc
Confidence            4445555555544443445555555 2343222222223344 77777  666577765 56677887 444 221  11


Q ss_pred             cCCCcccCCccEEEcCCCcEEEEeCCCCCCcccccccccccCCCceEEEEeCCCCeeEEeec--cccccceEEEcC----
Q 026118           88 FNGSQLRFANDVIEASDGSLYFTVSSTKFTPAEYYLDLVSGEPHGVLLKYDPSTNQTSLVLD--GLYFANGVALSE----  161 (243)
Q Consensus        88 ~~~~~~~~~~~l~~d~~G~l~v~~~~~~~~~~~~~~~~~~~~~~g~v~~~~~~~~~~~~~~~--~~~~~~gi~~~~----  161 (243)
                      ... ....+.+++++++|++.++..                 ..+.|..++..+++......  .......++|+|    
T Consensus       484 ~~~-~~~~v~~~~~s~~g~~l~~~~-----------------~dg~i~iw~~~~~~~~~~~~~~h~~~v~~~~~sp~~~~  545 (615)
T 1pgu_A          484 KTP-LRAKPSYISISPSETYIAAGD-----------------VMGKILLYDLQSREVKTSRWAFRTSKINAISWKPAEKG  545 (615)
T ss_dssp             SSC-CSSCEEEEEECTTSSEEEEEE-----------------TTSCEEEEETTTTEEEECCSCCCSSCEEEEEECCCC--
T ss_pred             cCC-ccCceEEEEECCCCCEEEEcC-----------------CCCeEEEeeCCCCcceeEeecCCCCceeEEEEcCcccc
Confidence            111 224567899999998777632                 24578888988777654432  344567899999    


Q ss_pred             ------CCCEEEEEEcCCCeEEEEEeecCCCcceEEeccCCCCCCCceEECCCCCEEEEE
Q 026118          162 ------DERFLVVCESWKFRCVKHFLKVSGRTDREIFIDNLPGGPDNVNLARDGSFWISI  215 (243)
Q Consensus       162 ------dg~~l~v~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~i~~d~~G~lwv~~  215 (243)
                            ++++|..+ ..++.|..|+..... .....+ .........+++.++|+ .++.
T Consensus       546 ~~~~~~~~~~l~~~-~~dg~i~iw~~~~~~-~~~~~~-~~h~~~v~~l~~s~~~~-l~s~  601 (615)
T 1pgu_A          546 ANEEEIEEDLVATG-SLDTNIFIYSVKRPM-KIIKAL-NAHKDGVNNLLWETPST-LVSS  601 (615)
T ss_dssp             ----CCSCCEEEEE-ETTSCEEEEESSCTT-CCEEET-TSSTTCEEEEEEEETTE-EEEE
T ss_pred             ccccccCCCEEEEE-cCCCcEEEEECCCCc-eechhh-hcCccceEEEEEcCCCC-eEEe
Confidence                  99955555 567899999987531 112222 12233456688888888 4433

>3azo_A Aminopeptidase; POP family, hydrolase; 2.00A {Streptomyces morookaensis} PDB: 3azp_A 3azq_A

Probab=98.43  E-value=1.4e-05  Score=70.37  Aligned_cols=180  Identities=14%  Similarity=0.043  Sum_probs=102.2

Q ss_pred             CCC-c-EEEEe-CCCcEEEEccC----CceeEeccc-----CCccccceEEccCCCEEEEEeCC----------CcEEEE
Q 026118           19 GNG-V-LYTAT-GDGWIKRMHPN----GTWEDWHQV-----GSQSLLGLTTTKENNVIIVCDSQ----------QGLLKV   76 (243)
Q Consensus        19 ~~g-~-l~~~~-~~~~i~~~~~~----g~~~~~~~~-----~~~~~~~i~~~~~g~l~~v~~~~----------~gl~~~   76 (243)
                      ||| . |.++. .+..|+.++.+    +....+...     ..... ++++++||+.|+++...          ..|+.+
T Consensus        88 PDg~~~la~~~~~~~~l~~~~~~~~g~~~~~~l~~~~~~~~~~~~~-~~~~spDg~~l~~~~~~~~~~~~~~~~~~i~~~  166 (662)
T 3azo_A           88 PAGGPLLVFTHFGDQRLYAFEPDAPGGAVPRPLTPVSAVGGGLRWA-DPVLLPERGEVWCMAEEFTGEGPSDVRRFLAAV  166 (662)
T ss_dssp             SSSSCEEEEEBTTTCCEEEECTTSTTCCCCEECSCCCCSTTCEEEE-EEEEETTTTEEEEEEEEECSSSTTCEEEEEEEE
T ss_pred             cCCCeEEEEEECCCCeEEEEcCCCCCCCCCEeccCCccCCCCcccc-CcEECCCCCEEEEEEecccCCCCCCceeEEEEE
Confidence            677 4 55554 46789999865    555544331     12334 78999999875555433          257888


Q ss_pred             e-cC------C-cEEEEeccCCCcccCCccEEEcCCCc-EEEEeCCCCCCcccccccccccCCCceEEEEeCC-CC---e
Q 026118           77 S-EE------G-VTVLVSQFNGSQLRFANDVIEASDGS-LYFTVSSTKFTPAEYYLDLVSGEPHGVLLKYDPS-TN---Q  143 (243)
Q Consensus        77 ~-~~------g-~~~~~~~~~~~~~~~~~~l~~d~~G~-l~v~~~~~~~~~~~~~~~~~~~~~~g~v~~~~~~-~~---~  143 (243)
                      + .+      + .+.+..  .+  .....+++++|||+ |.++.....          ........|+.++.+ ++   +
T Consensus       167 ~~~~~~~~~~~~~~~l~~--~~--~~~~~~~~~SpDG~~la~~~~~~~----------~~~~~~~~i~~~d~~~~g~~~~  232 (662)
T 3azo_A          167 PLDGSAAADRSAVRELSD--DA--HRFVTGPRLSPDGRQAVWLAWDHP----------RMPWEGTELKTARVTEDGRFAD  232 (662)
T ss_dssp             ETTSTTTTCGGGSEESSC--SC--SSEECCCEECTTSSEEEEEEECTT----------CCTTTCEEEEEEEECTTSCEEE
T ss_pred             ECCCCccccCCceeEEEe--cC--CCcccCceECCCCCEEEEEECCCC----------CCCCCCcEEEEEEECCCCcccc
Confidence            8 55      5 443320  11  12345678999997 444421100          000012478999888 46   5


Q ss_pred             eEEeecc-ccccceEEEcCCCCEEEEEEcCCC--eEEEEEeecCCCcceEEeccCCCC------C--CCceEECCCCCEE
Q 026118          144 TSLVLDG-LYFANGVALSEDERFLVVCESWKF--RCVKHFLKVSGRTDREIFIDNLPG------G--PDNVNLARDGSFW  212 (243)
Q Consensus       144 ~~~~~~~-~~~~~gi~~~~dg~~l~v~~~~~~--~i~~~~~~~~~~~~~~~~~~~~~~------~--~~~i~~d~~G~lw  212 (243)
                      .+.+... ......++|+|||+ +|++...++  .|++++.+++.   .+.+......      .  ...+++.++|+++
T Consensus       233 ~~~l~~~~~~~~~~~~~spdg~-l~~~~~~~~~~~l~~~~~~~~~---~~~l~~~~~~~~~p~w~~~~~~~~~~~~~~~~  308 (662)
T 3azo_A          233 TRTLLGGPEEAIAQAEWAPDGS-LIVATDRTGWWNLHRVDPATGA---ATQLCRREEEFAGPLWTPGMRWFAPLANGLIA  308 (662)
T ss_dssp             EEEEEEETTBCEEEEEECTTSC-EEEEECTTSSCEEEEECTTTCC---EEESSCCSSBSSCCCCSTTCCSEEECTTSCEE
T ss_pred             cEEeCCCCCceEcceEECCCCe-EEEEECCCCCeEEEEEECCCCc---eeecccccccccCccccccCceEeEeCCCEEE
Confidence            5555543 35567899999999 666554444  78888764422   2222111100      1  2357777778876


Q ss_pred             EEEec
Q 026118          213 ISIIK  217 (243)
Q Consensus       213 v~~~~  217 (243)
                      +....
T Consensus       309 ~~~~~  313 (662)
T 3azo_A          309 VVHGK  313 (662)
T ss_dssp             EEEBS
T ss_pred             EEEEc
Confidence            66544

>3azo_A Aminopeptidase; POP family, hydrolase; 2.00A {Streptomyces morookaensis} PDB: 3azp_A 3azq_A

Probab=98.42  E-value=9.5e-06  Score=71.48  Aligned_cols=200  Identities=14%  Similarity=0.043  Sum_probs=108.4

Q ss_pred             CcccEEEcCCCcEEEEe--C-CC--cEEEEccCCceeEecccCCccc------c--ceEEc--cCCCE-EEEEeC-CCcE
Q 026118           11 HPEDVSVDGNGVLYTAT--G-DG--WIKRMHPNGTWEDWHQVGSQSL------L--GLTTT--KENNV-IIVCDS-QQGL   73 (243)
Q Consensus        11 ~p~~i~~d~~g~l~~~~--~-~~--~i~~~~~~g~~~~~~~~~~~~~------~--~i~~~--~~g~l-~~v~~~-~~gl   73 (243)
                      ....+++++++.+|+..  . ++  .|+....+++...+........      +  ...+.  |||+. ++++.. ...|
T Consensus        25 ~~~~~~~s~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~SPDg~~~la~~~~~~~~l  104 (662)
T 3azo_A           25 RPACVGAVGDEVWWVAPRPAEAGRATLVRRRADGAEESALPAPWNVRNRVFEYSGFPWAGVPRPAGGPLLVFTHFGDQRL  104 (662)
T ss_dssp             CCEEEEEETTEEEEEEEETTTTTEEEEEEECTTSCEEESSCTTCCBCCCGGGTCCCCEEEECCSSSSCEEEEEBTTTCCE
T ss_pred             ccceeEEcCCeEEEEecCcccCCcEEEEEECCCCCcceeCCCCccccccccccCCccceeeeecCCCeEEEEEECCCCeE
Confidence            45567788776666665  2 22  3444434555444432111100      0  22233  88875 455543 3568


Q ss_pred             EEEe-c--C-C-cEEEEeccCCCcccCCccEEEcCCCcEE-EEeCCCCCCcccccccccccCCCceEEEEeCCC------
Q 026118           74 LKVS-E--E-G-VTVLVSQFNGSQLRFANDVIEASDGSLY-FTVSSTKFTPAEYYLDLVSGEPHGVLLKYDPST------  141 (243)
Q Consensus        74 ~~~~-~--~-g-~~~~~~~~~~~~~~~~~~l~~d~~G~l~-v~~~~~~~~~~~~~~~~~~~~~~g~v~~~~~~~------  141 (243)
                      +.++ .  . + .+.+...........+.+++++|||+.. ++.....        ..........|++++.++      
T Consensus       105 ~~~~~~~~g~~~~~~l~~~~~~~~~~~~~~~~~spDg~~l~~~~~~~~--------~~~~~~~~~~i~~~~~~~~~~~~~  176 (662)
T 3azo_A          105 YAFEPDAPGGAVPRPLTPVSAVGGGLRWADPVLLPERGEVWCMAEEFT--------GEGPSDVRRFLAAVPLDGSAAADR  176 (662)
T ss_dssp             EEECTTSTTCCCCEECSCCCCSTTCEEEEEEEEETTTTEEEEEEEEEC--------SSSTTCEEEEEEEEETTSTTTTCG
T ss_pred             EEEcCCCCCCCCCEeccCCccCCCCccccCcEECCCCCEEEEEEeccc--------CCCCCCceeEEEEEECCCCccccC
Confidence            8888 4  2 5 4443321100011234577899999744 4421100        000001224799999997      


Q ss_pred             CeeEEee-ccccccceEEEcCCCCEEEEEEcCC-------CeEEEEEeec-CCCcceEEeccCCCCCCCceEECCCCCEE
Q 026118          142 NQTSLVL-DGLYFANGVALSEDERFLVVCESWK-------FRCVKHFLKV-SGRTDREIFIDNLPGGPDNVNLARDGSFW  212 (243)
Q Consensus       142 ~~~~~~~-~~~~~~~gi~~~~dg~~l~v~~~~~-------~~i~~~~~~~-~~~~~~~~~~~~~~~~~~~i~~d~~G~lw  212 (243)
                      ++.+.+. ........++++|||++|+++....       ..|+.++.++ +.......+.......+..+++++||+++
T Consensus       177 ~~~~~l~~~~~~~~~~~~~SpDG~~la~~~~~~~~~~~~~~~i~~~d~~~~g~~~~~~~l~~~~~~~~~~~~~spdg~l~  256 (662)
T 3azo_A          177 SAVRELSDDAHRFVTGPRLSPDGRQAVWLAWDHPRMPWEGTELKTARVTEDGRFADTRTLLGGPEEAIAQAEWAPDGSLI  256 (662)
T ss_dssp             GGSEESSCSCSSEECCCEECTTSSEEEEEEECTTCCTTTCEEEEEEEECTTSCEEEEEEEEEETTBCEEEEEECTTSCEE
T ss_pred             CceeEEEecCCCcccCceECCCCCEEEEEECCCCCCCCCCcEEEEEEECCCCcccccEEeCCCCCceEcceEECCCCeEE
Confidence            6777666 5455567789999999888765432       4799999873 32223333322222345567788888876


Q ss_pred             EEEecC
Q 026118          213 ISIIKM  218 (243)
Q Consensus       213 v~~~~~  218 (243)
                      +.....
T Consensus       257 ~~~~~~  262 (662)
T 3azo_A          257 VATDRT  262 (662)
T ss_dssp             EEECTT
T ss_pred             EEECCC
Confidence            655443

>3f3f_A Nucleoporin SEH1; structural protein, protein complex, nucleopori complex, nuclear pore complex, macromolecular assembly, MEM coat; 2.90A {Saccharomyces cerevisiae} PDB: 3f3g_A 3f3p_A 3ewe_A

Probab=98.42  E-value=0.00025  Score=56.26  Aligned_cols=105  Identities=17%  Similarity=0.153  Sum_probs=59.4

Q ss_pred             eecccccCCcccEEEcCCCc-EEEEeCCCcEEEEccC-Cc----e-eEecccCCccccceEEcc--CCCEEEEEeCCCcE
Q 026118            3 KLGEGIVNHPEDVSVDGNGV-LYTATGDGWIKRMHPN-GT----W-EDWHQVGSQSLLGLTTTK--ENNVIIVCDSQQGL   73 (243)
Q Consensus         3 ~~~~g~~~~p~~i~~d~~g~-l~~~~~~~~i~~~~~~-g~----~-~~~~~~~~~~~~~i~~~~--~g~l~~v~~~~~gl   73 (243)
                      .+..|.-..-.++++.++|. |..+..++.|..++.. +.    . ..+........ .+++.+  ++++|+++..++.|
T Consensus         5 ~~~~gH~~~v~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~v~-~~~~~~~~d~~~l~s~~~dg~v   83 (351)
T 3f3f_A            5 PFDSGHDDLVHDVVYDFYGRHVATCSSDQHIKVFKLDKDTSNWELSDSWRAHDSSIV-AIDWASPEYGRIIASASYDKTV   83 (351)
T ss_dssp             CEECCCSSCEEEEEECSSSSEEEEEETTSEEEEEEECSSSCCEEEEEEEECCSSCEE-EEEECCGGGCSEEEEEETTSCE
T ss_pred             ccCcccccceeEEEEcCCCCEEEEeeCCCeEEEEECCCCCCcceecceeccCCCcEE-EEEEcCCCCCCEEEEEcCCCeE
Confidence            34455444567899999886 5556688889888832 21    1 11111122234 888987  58885666655557


Q ss_pred             EEEe-cCC-c-------EEEEeccCCCcccCCccEEEcCC--CcEEEE
Q 026118           74 LKVS-EEG-V-------TVLVSQFNGSQLRFANDVIEASD--GSLYFT  110 (243)
Q Consensus        74 ~~~~-~~g-~-------~~~~~~~~~~~~~~~~~l~~d~~--G~l~v~  110 (243)
                      ..++ ..+ .       +.+.. ... ....+.++++.++  ++++++
T Consensus        84 ~vwd~~~~~~~~~~~~~~~~~~-~~~-~~~~v~~~~~~~~~~~~~l~~  129 (351)
T 3f3f_A           84 KLWEEDPDQEECSGRRWNKLCT-LND-SKGSLYSVKFAPAHLGLKLAC  129 (351)
T ss_dssp             EEEEECTTSCTTSSCSEEEEEE-ECC-CSSCEEEEEECCGGGCSEEEE
T ss_pred             EEEecCCCcccccccCcceeee-ecc-cCCceeEEEEcCCCCCcEEEE
Confidence            7777 433 1       22222 111 1234567777777  665544

>3iz6_a 40S ribosomal protein RACK1 (RACK1); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum}

Probab=98.42  E-value=0.00014  Score=59.71  Aligned_cols=178  Identities=18%  Similarity=0.087  Sum_probs=106.9

Q ss_pred             cEEEcCC-C-cEEEEeCCCcEEEEc-cCCcee-Eecc-----cCCccccceEEcc-CCCEEEEEeCCCcEEEEe-c-CC-
Q 026118           14 DVSVDGN-G-VLYTATGDGWIKRMH-PNGTWE-DWHQ-----VGSQSLLGLTTTK-ENNVIIVCDSQQGLLKVS-E-EG-   80 (243)
Q Consensus        14 ~i~~d~~-g-~l~~~~~~~~i~~~~-~~g~~~-~~~~-----~~~~~~~~i~~~~-~g~l~~v~~~~~gl~~~~-~-~g-   80 (243)
                      ++.+.++ + .|..+..++.|..+| ..++.. .+..     ...... .+.+.+ +++++..+..++.+..+| . .+ 
T Consensus       162 ~~~~~~~~~~~l~s~s~D~~i~~wd~~~~~~~~~~~~~~~~~h~~~v~-~~~~~~~~~~~l~sgs~D~~v~~wd~~~~~~  240 (380)
T 3iz6_a          162 SCQYVPDQETRLITGSGDQTCVLWDVTTGQRISIFGSEFPSGHTADVL-SLSINSLNANMFISGSCDTTVRLWDLRITSR  240 (380)
T ss_dssp             CCBCCSSSSSCEEEECTTSCEEEECTTTCCEEEEECCCSSSSCCSCEE-EEEECSSSCCEEEEEETTSCEEEEETTTTCC
T ss_pred             EEEEecCCCCEEEEECCCCcEEEEEcCCCcEEEEeecccCCCCccCeE-EEEeecCCCCEEEEEECCCeEEEEECCCCCc
Confidence            4455543 3 577777889999999 444432 2211     011223 667765 778745555555677777 4 33 


Q ss_pred             -cEEEEeccCCCcccCCccEEEcCCCcEEEEeCCCCCCcccccccccccCCCceEEEEeCCCCeeEEeecc--------c
Q 026118           81 -VTVLVSQFNGSQLRFANDVIEASDGSLYFTVSSTKFTPAEYYLDLVSGEPHGVLLKYDPSTNQTSLVLDG--------L  151 (243)
Q Consensus        81 -~~~~~~~~~~~~~~~~~~l~~d~~G~l~v~~~~~~~~~~~~~~~~~~~~~~g~v~~~~~~~~~~~~~~~~--------~  151 (243)
                       ...+..     ....+.++++.|+|+++++.+.                 .+.|..+|..+++.......        .
T Consensus       241 ~~~~~~~-----h~~~v~~v~~~p~~~~l~s~s~-----------------D~~i~lwd~~~~~~~~~~~~~~~~~~~~~  298 (380)
T 3iz6_a          241 AVRTYHG-----HEGDINSVKFFPDGQRFGTGSD-----------------DGTCRLFDMRTGHQLQVYNREPDRNDNEL  298 (380)
T ss_dssp             CCEEECC-----CSSCCCEEEECTTSSEEEEECS-----------------SSCEEEEETTTTEEEEEECCCCSSSCCSS
T ss_pred             ceEEECC-----cCCCeEEEEEecCCCeEEEEcC-----------------CCeEEEEECCCCcEEEEeccccccccccc
Confidence             332221     1235778999999998887432                 45788888887765443221        1


Q ss_pred             cccceEEEcCCCCEEEEEEcCCCeEEEEEeecCCCcceEEec---cCCCCCCCceEECCCCCEEEEEec
Q 026118          152 YFANGVALSEDERFLVVCESWKFRCVKHFLKVSGRTDREIFI---DNLPGGPDNVNLARDGSFWISIIK  217 (243)
Q Consensus       152 ~~~~gi~~~~dg~~l~v~~~~~~~i~~~~~~~~~~~~~~~~~---~~~~~~~~~i~~d~~G~lwv~~~~  217 (243)
                      .....++|+++|++|+.+ ..++.|..||......  ...+.   ..-.+....++++++|++.++...
T Consensus       299 ~~v~~~~~s~~g~~l~~g-~~dg~i~vwd~~~~~~--~~~~~~~~~~h~~~v~~l~~s~dg~~l~sgs~  364 (380)
T 3iz6_a          299 PIVTSVAFSISGRLLFAG-YSNGDCYVWDTLLAEM--VLNLGTLQNSHEGRISCLGLSSDGSALCTGSW  364 (380)
T ss_dssp             CSCSEEEECSSSSEEEEE-CTTSCEEEEETTTCCE--EEEECCSCSSCCCCCCEEEECSSSSEEEEECT
T ss_pred             CceEEEEECCCCCEEEEE-ECCCCEEEEECCCCce--EEEEecccCCCCCceEEEEECCCCCEEEEeeC
Confidence            235789999999955555 5678999998654211  11111   122335677999999986665443

>1z68_A Fibroblast activation protein, alpha subunit; seprase, fibroblast activation protein alpha,fapalpha, dipeptidylpeptidase,S9B; HET: NAG NDG; 2.60A {Homo sapiens}

Probab=98.41  E-value=4.8e-06  Score=74.14  Aligned_cols=135  Identities=9%  Similarity=-0.019  Sum_probs=84.6

Q ss_pred             cccEEEcCCCcEEEEeCCCcEEEEc-cCCceeEecccCCc----cccceEEccCCCEEEEEeC---------CCcEEEEe
Q 026118           12 PEDVSVDGNGVLYTATGDGWIKRMH-PNGTWEDWHQVGSQ----SLLGLTTTKENNVIIVCDS---------QQGLLKVS   77 (243)
Q Consensus        12 p~~i~~d~~g~l~~~~~~~~i~~~~-~~g~~~~~~~~~~~----~~~~i~~~~~g~l~~v~~~---------~~gl~~~~   77 (243)
                      +.++++.++|.++.+..++.|+.++ ..++..........    .. .++++|||+.|.++..         ...++.++
T Consensus        18 ~~~~~~s~dg~~~~~~~d~~i~~~~~~~g~~~~~~~~~~~~~~~~~-~~~~SpDg~~la~~~~~~~~~~~s~~~~i~~~d   96 (719)
T 1z68_A           18 TFFPNWISGQEYLHQSADNNIVLYNIETGQSYTILSNRTMKSVNAS-NYGLSPDRQFVYLESDYSKLWRYSYTATYYIYD   96 (719)
T ss_dssp             CCCCEESSSSEEEEECTTSCEEEEESSSCCEEEEECHHHHHTTTCS-EEEECTTSSEEEEEEEEEECSSSCEEEEEEEEE
T ss_pred             CCccEECCCCeEEEEcCCCCEEEEEcCCCcEEEEEcccccccccee-eEEECCCCCeEEEEecCceeEEeecceEEEEEE
Confidence            4478888999766666788899999 45555444322111    34 7899999997555542         23577777


Q ss_pred             -cCCcEEEE-eccCCCcccCCccEEEcCCCc-EEEEeCCCCCCcccccccccccCCCceEEEEeCCCCeeEEeeccc---
Q 026118           78 -EEGVTVLV-SQFNGSQLRFANDVIEASDGS-LYFTVSSTKFTPAEYYLDLVSGEPHGVLLKYDPSTNQTSLVLDGL---  151 (243)
Q Consensus        78 -~~g~~~~~-~~~~~~~~~~~~~l~~d~~G~-l~v~~~~~~~~~~~~~~~~~~~~~~g~v~~~~~~~~~~~~~~~~~---  151 (243)
                       .++.. +. ...    ...+..++++|||+ |.++.                   .+.|+.++.++++..++....   
T Consensus        97 ~~~g~~-~~~~~l----~~~~~~~~~SPDG~~la~~~-------------------~~~i~~~~~~~g~~~~l~~~~~~~  152 (719)
T 1z68_A           97 LSNGEF-VRGNEL----PRPIQYLCWSPVGSKLAYVY-------------------QNNIYLKQRPGDPPFQITFNGREN  152 (719)
T ss_dssp             TTTTEE-CCSSCC----CSSBCCEEECSSTTCEEEEE-------------------TTEEEEESSTTSCCEECCCCCBTT
T ss_pred             CCCCcc-ccceec----CcccccceECCCCCEEEEEE-------------------CCeEEEEeCCCCCcEEEecCCCcC
Confidence             55511 00 001    12356789999997 44431                   247899998877766553211   


Q ss_pred             ----------------cccceEEEcCCCCEEEEEEc
Q 026118          152 ----------------YFANGVALSEDERFLVVCES  171 (243)
Q Consensus       152 ----------------~~~~gi~~~~dg~~l~v~~~  171 (243)
                                      ....+++|+|||++|+++..
T Consensus       153 ~v~~g~~~~v~~ee~~~~~~~~~wSPDG~~la~~~~  188 (719)
T 1z68_A          153 KIFNGIPDWVYEEEMLATKYALWWSPNGKFLAYAEF  188 (719)
T ss_dssp             TEEESSCCHHHHHHTTCSSCCEEECTTSSEEEEEEE
T ss_pred             CeEcccccceeeeecccCcccEEECCCCCEEEEEEE
Confidence                            11247999999998877643

>2xyi_A Probable histone-binding protein CAF1; transcription, repressor, phosphoprotein, WD-repeat; HET: PG4; 1.75A {Drosophila melanogaster} PDB: 3c99_A 3c9c_A 2yb8_B 2yba_A 2xu7_A* 3gfc_A 3cfs_B 3cfv_B

Probab=98.40  E-value=6.9e-05  Score=62.59  Aligned_cols=186  Identities=10%  Similarity=-0.051  Sum_probs=111.9

Q ss_pred             CcccEEEcCCCc--EEEEeCCCcEEEEccCC--c-------eeEecccCCccccceEEcc-CCCEEEEEeCCCcEEEEe-
Q 026118           11 HPEDVSVDGNGV--LYTATGDGWIKRMHPNG--T-------WEDWHQVGSQSLLGLTTTK-ENNVIIVCDSQQGLLKVS-   77 (243)
Q Consensus        11 ~p~~i~~d~~g~--l~~~~~~~~i~~~~~~g--~-------~~~~~~~~~~~~~~i~~~~-~g~l~~v~~~~~gl~~~~-   77 (243)
                      ...+|++.+++.  |.++..++.|..++...  .       ...+........ ++++++ ++.+++++...+.|..++ 
T Consensus       183 ~v~~l~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~h~~~v~-~v~~~p~~~~~l~s~~~dg~i~i~d~  261 (430)
T 2xyi_A          183 EGYGLSWNPNLNGYLLSASDDHTICLWDINATPKEHRVIDAKNIFTGHTAVVE-DVAWHLLHESLFGSVADDQKLMIWDT  261 (430)
T ss_dssp             CCCCEEECTTSTTEEEEECTTSCEEEEETTSCCBGGGEEECSEEECCCSSCEE-EEEECSSCTTEEEEEETTSEEEEEET
T ss_pred             CeEEEEeCCCCCCeEEEEeCCCeEEEEeCCCCCCCCceeccceeecCCCCCEe-eeEEeCCCCCEEEEEeCCCeEEEEEC
Confidence            457799998765  55566888999998322  1       112212222334 789988 566745555555677777 


Q ss_pred             cCC-----cEEEEeccCCCcccCCccEEEcCCCc-EEEEeCCCCCCcccccccccccCCCceEEEEeCCCC-e-eEEeec
Q 026118           78 EEG-----VTVLVSQFNGSQLRFANDVIEASDGS-LYFTVSSTKFTPAEYYLDLVSGEPHGVLLKYDPSTN-Q-TSLVLD  149 (243)
Q Consensus        78 ~~g-----~~~~~~~~~~~~~~~~~~l~~d~~G~-l~v~~~~~~~~~~~~~~~~~~~~~~g~v~~~~~~~~-~-~~~~~~  149 (243)
                      .++     ...+..     ....+.++++.+++. ++++.+                 ..+.|..+|..+. . +..+..
T Consensus       262 ~~~~~~~~~~~~~~-----~~~~v~~i~~~p~~~~~l~tg~-----------------~dg~v~vwd~~~~~~~~~~~~~  319 (430)
T 2xyi_A          262 RNNNTSKPSHTVDA-----HTAEVNCLSFNPYSEFILATGS-----------------ADKTVALWDLRNLKLKLHSFES  319 (430)
T ss_dssp             TCSCSSSCSEEEEC-----CSSCEEEEEECSSCTTEEEEEE-----------------TTSEEEEEETTCTTSCSEEEEC
T ss_pred             CCCCCCcceeEeec-----CCCCeEEEEeCCCCCCEEEEEe-----------------CCCeEEEEeCCCCCCCeEEeec
Confidence            433     222211     124577899999886 565532                 2357888887652 2 233333


Q ss_pred             cccccceEEEcCCCCEEEEEEcCCCeEEEEEeecCCCc-----------ceEEeccCCCCCCCceEECCCCC-EEEEEec
Q 026118          150 GLYFANGVALSEDERFLVVCESWKFRCVKHFLKVSGRT-----------DREIFIDNLPGGPDNVNLARDGS-FWISIIK  217 (243)
Q Consensus       150 ~~~~~~gi~~~~dg~~l~v~~~~~~~i~~~~~~~~~~~-----------~~~~~~~~~~~~~~~i~~d~~G~-lwv~~~~  217 (243)
                      .......++++|+++.++++...++.|..|++......           ............+..+++++++. +.++...
T Consensus       320 h~~~v~~i~~sp~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~l~s~s~  399 (430)
T 2xyi_A          320 HKDEIFQVQWSPHNETILASSGTDRRLHVWDLSKIGEEQSTEDAEDGPPELLFIHGGHTAKISDFSWNPNEPWIICSVSE  399 (430)
T ss_dssp             CSSCEEEEEECSSCTTEEEEEETTSCCEEEEGGGTTCCCCHHHHHHCCTTEEEECCCCSSCEEEEEECSSSTTEEEEEET
T ss_pred             CCCCEEEEEECCCCCCEEEEEeCCCcEEEEeCCCCccccCccccccCCcceEEEcCCCCCCceEEEECCCCCCEEEEEEC
Confidence            34556789999999777877777889999998752110           11111112233467799999998 6666654


Q ss_pred             CC
Q 026118          218 MD  219 (243)
Q Consensus       218 ~~  219 (243)
                      .+
T Consensus       400 dg  401 (430)
T 2xyi_A          400 DN  401 (430)
T ss_dssp             TS
T ss_pred             CC
Confidence            43

>3vl1_A 26S proteasome regulatory subunit RPN14; beta-propeller, chaperone, RPT6; 1.60A {Saccharomyces cerevisiae} PDB: 3acp_A

Probab=98.39  E-value=0.00019  Score=59.11  Aligned_cols=156  Identities=9%  Similarity=0.042  Sum_probs=96.5

Q ss_pred             CCcccEEEcCCCc-EEEEeCCCcEEEEc-cCCc-eeEecccCCccccceEEccCCCEEEEEeCCCcEEEEe-cCC-c-EE
Q 026118           10 NHPEDVSVDGNGV-LYTATGDGWIKRMH-PNGT-WEDWHQVGSQSLLGLTTTKENNVIIVCDSQQGLLKVS-EEG-V-TV   83 (243)
Q Consensus        10 ~~p~~i~~d~~g~-l~~~~~~~~i~~~~-~~g~-~~~~~~~~~~~~~~i~~~~~g~l~~v~~~~~gl~~~~-~~g-~-~~   83 (243)
                      ....++++.+++. |+.+..++.|..++ .+++ ...+........ ++++++++++|+.+..++.+..++ .++ . ..
T Consensus       140 ~~v~~~~~~~~~~~l~s~s~d~~i~iwd~~~~~~~~~~~~h~~~v~-~~~~~~~~~~l~s~~~d~~v~iwd~~~~~~~~~  218 (420)
T 3vl1_A          140 SEITKLKFFPSGEALISSSQDMQLKIWSVKDGSNPRTLIGHRATVT-DIAIIDRGRNVLSASLDGTIRLWECGTGTTIHT  218 (420)
T ss_dssp             SCEEEEEECTTSSEEEEEETTSEEEEEETTTCCCCEEEECCSSCEE-EEEEETTTTEEEEEETTSCEEEEETTTTEEEEE
T ss_pred             CccEEEEECCCCCEEEEEeCCCeEEEEeCCCCcCceEEcCCCCcEE-EEEEcCCCCEEEEEcCCCcEEEeECCCCceeEE
Confidence            3456788998886 55666888999998 3443 333332223334 899999999856666555688888 655 2 22


Q ss_pred             EEeccCCC-------------------cccCCccEEEcCCCcEEEEeCCCCCCcccccccccccCCCceEEEEeCCCCee
Q 026118           84 LVSQFNGS-------------------QLRFANDVIEASDGSLYFTVSSTKFTPAEYYLDLVSGEPHGVLLKYDPSTNQT  144 (243)
Q Consensus        84 ~~~~~~~~-------------------~~~~~~~l~~d~~G~l~v~~~~~~~~~~~~~~~~~~~~~~g~v~~~~~~~~~~  144 (243)
                      +.......                   ....+.+++++++|++.++..                 ..+.|..+|..+++.
T Consensus       219 ~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~-----------------~dg~i~i~d~~~~~~  281 (420)
T 3vl1_A          219 FNRKENPHDGVNSIALFVGTDRQLHEISTSKKNNLEFGTYGKYVIAGH-----------------VSGVITVHNVFSKEQ  281 (420)
T ss_dssp             ECBTTBTTCCEEEEEEEECCCSSCGGGCCCCCCTTCSSCTTEEEEEEE-----------------TTSCEEEEETTTCCE
T ss_pred             eecCCCCCCCccEEEEecCCcceeeecccCcccceEEcCCCCEEEEEc-----------------CCCeEEEEECCCCce
Confidence            22110000                   012334556678887666522                 245788888876654


Q ss_pred             EEee-c-cccccceEEEcCCCC-EEEEEEcCCCeEEEEEeecC
Q 026118          145 SLVL-D-GLYFANGVALSEDER-FLVVCESWKFRCVKHFLKVS  184 (243)
Q Consensus       145 ~~~~-~-~~~~~~gi~~~~dg~-~l~v~~~~~~~i~~~~~~~~  184 (243)
                      .... . .......++++++++ +|+.+ ..++.|..|++...
T Consensus       282 ~~~~~~~~~~~v~~~~~~~~~~~~l~~g-~~dg~i~vwd~~~~  323 (420)
T 3vl1_A          282 TIQLPSKFTCSCNSLTVDGNNANYIYAG-YENGMLAQWDLRSP  323 (420)
T ss_dssp             EEEECCTTSSCEEEEEECSSCTTEEEEE-ETTSEEEEEETTCT
T ss_pred             eEEcccccCCCceeEEEeCCCCCEEEEE-eCCCeEEEEEcCCC
Confidence            3322 2 234567899999998 55555 56789999998753

>3frx_A Guanine nucleotide-binding protein subunit beta- like protein; RACK1, WD40, beta propeller, ribosome, translation, acetylation; 2.13A {Saccharomyces cerevisiae} PDB: 3izb_a 3o2z_T 3o30_T 3u5c_g 3u5g_g 3rfg_A 3rfh_A 1trj_A 3jyv_R*

Probab=98.38  E-value=0.00025  Score=56.66  Aligned_cols=181  Identities=12%  Similarity=0.037  Sum_probs=105.4

Q ss_pred             CcccEEEcCCC-c-EEEEeCCCcEEEEccC---Cc----eeEecccCCccccceEEccCCCEEEEEeCCCcEEEEe-cCC
Q 026118           11 HPEDVSVDGNG-V-LYTATGDGWIKRMHPN---GT----WEDWHQVGSQSLLGLTTTKENNVIIVCDSQQGLLKVS-EEG   80 (243)
Q Consensus        11 ~p~~i~~d~~g-~-l~~~~~~~~i~~~~~~---g~----~~~~~~~~~~~~~~i~~~~~g~l~~v~~~~~gl~~~~-~~g   80 (243)
                      .-.++++.+++ . |..+..++.|..++..   .+    ...+... ..+...++++++|+++..+..++-|..+| .++
T Consensus        19 ~V~~l~~~~~~~~~l~s~s~D~~v~~W~~~~~~~~~~~~~~~~~~h-~~~v~~~~~s~dg~~l~s~s~D~~v~~wd~~~~   97 (319)
T 3frx_A           19 WVTSLATSAGQPNLLLSASRDKTLISWKLTGDDQKFGVPVRSFKGH-SHIVQDCTLTADGAYALSASWDKTLRLWDVATG   97 (319)
T ss_dssp             CEEEEEECSSCTTEEEEEETTSEEEEEEEEEETTEEEEEEEEEECC-SSCEEEEEECTTSSEEEEEETTSEEEEEETTTT
T ss_pred             eEEEEEccCCCccEEEEecCCccEEEecCCCCCccccccceEEeCC-cccEEEEEECCCCCEEEEEeCCCEEEEEECCCC
Confidence            44568888744 4 5566688888888732   11    1122111 22333789999999856666555577777 666


Q ss_pred             -c-EEEEeccCCCcccCCccEEEcCCCcEEEEeCCCCCCcccccccccccCCCceEEEEeCCCCeeEEeeccccccceEE
Q 026118           81 -V-TVLVSQFNGSQLRFANDVIEASDGSLYFTVSSTKFTPAEYYLDLVSGEPHGVLLKYDPSTNQTSLVLDGLYFANGVA  158 (243)
Q Consensus        81 -~-~~~~~~~~~~~~~~~~~l~~d~~G~l~v~~~~~~~~~~~~~~~~~~~~~~g~v~~~~~~~~~~~~~~~~~~~~~gi~  158 (243)
                       . ..+..     ....+.++++++++.++++.+.                 .+.|..+|..+..+..+.........+.
T Consensus        98 ~~~~~~~~-----h~~~v~~~~~~~~~~~l~s~s~-----------------D~~i~vwd~~~~~~~~~~~h~~~v~~~~  155 (319)
T 3frx_A           98 ETYQRFVG-----HKSDVMSVDIDKKASMIISGSR-----------------DKTIKVWTIKGQCLATLLGHNDWVSQVR  155 (319)
T ss_dssp             EEEEEEEC-----CSSCEEEEEECTTSCEEEEEET-----------------TSCEEEEETTSCEEEEECCCSSCEEEEE
T ss_pred             CeeEEEcc-----CCCcEEEEEEcCCCCEEEEEeC-----------------CCeEEEEECCCCeEEEEeccCCcEEEEE
Confidence             2 22221     1234678899999987776432                 3456667776554444443344456677


Q ss_pred             EcCC------CCEEEEEEcCCCeEEEEEeecCCCcceEEeccCCCCCCCceEECCCCCEEEEEecC
Q 026118          159 LSED------ERFLVVCESWKFRCVKHFLKVSGRTDREIFIDNLPGGPDNVNLARDGSFWISIIKM  218 (243)
Q Consensus       159 ~~~d------g~~l~v~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~i~~d~~G~lwv~~~~~  218 (243)
                      +.|.      +. ++++...++.|..+++....  ....+. ........++++++|++.++....
T Consensus       156 ~~~~~~~~~~~~-~l~s~~~d~~i~~wd~~~~~--~~~~~~-~h~~~v~~~~~sp~g~~l~s~~~d  217 (319)
T 3frx_A          156 VVPNEKADDDSV-TIISAGNDKMVKAWNLNQFQ--IEADFI-GHNSNINTLTASPDGTLIASAGKD  217 (319)
T ss_dssp             ECCC------CC-EEEEEETTSCEEEEETTTTE--EEEEEC-CCCSCEEEEEECTTSSEEEEEETT
T ss_pred             EccCCCCCCCcc-EEEEEeCCCEEEEEECCcch--hheeec-CCCCcEEEEEEcCCCCEEEEEeCC
Confidence            7764      33 44444567889988875421  111221 222334568888888866655443

>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A

Probab=98.37  E-value=6.6e-05  Score=67.49  Aligned_cols=182  Identities=10%  Similarity=0.008  Sum_probs=108.2

Q ss_pred             CcccEEEcCCCc-EEEEeCCCcEEEEc-cCCcee-EecccCCccccceEEccCCCEEEEEeCCCcEEEEe-cCCcEEEEe
Q 026118           11 HPEDVSVDGNGV-LYTATGDGWIKRMH-PNGTWE-DWHQVGSQSLLGLTTTKENNVIIVCDSQQGLLKVS-EEGVTVLVS   86 (243)
Q Consensus        11 ~p~~i~~d~~g~-l~~~~~~~~i~~~~-~~g~~~-~~~~~~~~~~~~i~~~~~g~l~~v~~~~~gl~~~~-~~g~~~~~~   86 (243)
                      ...++++.++|. |.++..++.|..++ .+++.. .+........ .++++++|.++.++...+.+..++ .++......
T Consensus        57 ~v~~~~~s~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~v~-~~~~s~~~~~l~~~~~dg~i~vw~~~~~~~~~~~  135 (814)
T 3mkq_A           57 PVRAGKFIARKNWIIVGSDDFRIRVFNYNTGEKVVDFEAHPDYIR-SIAVHPTKPYVLSGSDDLTVKLWNWENNWALEQT  135 (814)
T ss_dssp             CEEEEEEEGGGTEEEEEETTSEEEEEETTTCCEEEEEECCSSCEE-EEEECSSSSEEEEEETTSEEEEEEGGGTSEEEEE
T ss_pred             cEEEEEEeCCCCEEEEEeCCCeEEEEECCCCcEEEEEecCCCCEE-EEEEeCCCCEEEEEcCCCEEEEEECCCCceEEEE
Confidence            345788888886 55666888999998 455433 3322223334 899999998756666555577777 544121111


Q ss_pred             ccCCCcccCCccEEEcC-CCcEEEEeCCCCCCcccccccccccCCCceEEEEeCCCCeeEEe-ecc-ccccceEEEcC--
Q 026118           87 QFNGSQLRFANDVIEAS-DGSLYFTVSSTKFTPAEYYLDLVSGEPHGVLLKYDPSTNQTSLV-LDG-LYFANGVALSE--  161 (243)
Q Consensus        87 ~~~~~~~~~~~~l~~d~-~G~l~v~~~~~~~~~~~~~~~~~~~~~~g~v~~~~~~~~~~~~~-~~~-~~~~~gi~~~~--  161 (243)
                       ..+ ....+.+++++| +++++++.+                 ..+.|..++..+++.... ... ......+++++  
T Consensus       136 -~~~-~~~~v~~~~~~p~~~~~l~~~~-----------------~dg~v~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~  196 (814)
T 3mkq_A          136 -FEG-HEHFVMCVAFNPKDPSTFASGC-----------------LDRTVKVWSLGQSTPNFTLTTGQERGVNYVDYYPLP  196 (814)
T ss_dssp             -EEC-CSSCEEEEEEETTEEEEEEEEE-----------------TTSEEEEEETTCSSCSEEEECCCTTCCCEEEECCST
T ss_pred             -EcC-CCCcEEEEEEEcCCCCEEEEEe-----------------CCCeEEEEECCCCcceeEEecCCCCCEEEEEEEECC
Confidence             111 123466889998 777666532                 235788888765543332 222 24567899998  


Q ss_pred             CCCEEEEEEcCCCeEEEEEeecCCCcceEEeccCCCCCCCceEECCCCCEEEEEe
Q 026118          162 DERFLVVCESWKFRCVKHFLKVSGRTDREIFIDNLPGGPDNVNLARDGSFWISII  216 (243)
Q Consensus       162 dg~~l~v~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~i~~d~~G~lwv~~~  216 (243)
                      ++++++++ ..++.|..|+.....  ....+. ........+++.++|++.++..
T Consensus       197 ~~~~l~~~-~~dg~i~~~d~~~~~--~~~~~~-~~~~~v~~~~~~~~~~~l~~~~  247 (814)
T 3mkq_A          197 DKPYMITA-SDDLTIKIWDYQTKS--CVATLE-GHMSNVSFAVFHPTLPIIISGS  247 (814)
T ss_dssp             TCCEEEEE-CTTSEEEEEETTTTE--EEEEEE-CCSSCEEEEEECSSSSEEEEEE
T ss_pred             CCCEEEEE-eCCCEEEEEECCCCc--EEEEEc-CCCCCEEEEEEcCCCCEEEEEe
Confidence            88855555 567889999875421  122221 1222345677788887544443

>3q7m_A Lipoprotein YFGL, BAMB; beta-propeller, BAM complex, outer membrane protein folding, negative, BAMA, protein binding; 1.65A {Escherichia coli} PDB: 3q7n_A 3q7o_A 3p1l_A 3prw_A 2yh3_A 3q54_A

Probab=98.36  E-value=4.2e-05  Score=62.59  Aligned_cols=137  Identities=16%  Similarity=0.166  Sum_probs=78.8

Q ss_pred             CCcEEEEeCCCcEEEEcc-CCceeEecccC---------Ccc-ccceEEccCCCEEEEEeCCCcEEEEe-cCC-cEEEEe
Q 026118           20 NGVLYTATGDGWIKRMHP-NGTWEDWHQVG---------SQS-LLGLTTTKENNVIIVCDSQQGLLKVS-EEG-VTVLVS   86 (243)
Q Consensus        20 ~g~l~~~~~~~~i~~~~~-~g~~~~~~~~~---------~~~-~~~i~~~~~g~l~~v~~~~~gl~~~~-~~g-~~~~~~   86 (243)
                      +++||+++.++.|+.+|. +|+........         ... ...++. .++.+ |+++....|+.+| .+| ......
T Consensus        53 ~~~v~~~~~~g~v~a~d~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~~-~~~~v-~v~~~~g~l~a~d~~tG~~~W~~~  130 (376)
T 3q7m_A           53 DNVVYAADRAGLVKALNADDGKEIWSVSLAEKDGWFSKEPALLSGGVTV-SGGHV-YIGSEKAQVYALNTSDGTVAWQTK  130 (376)
T ss_dssp             TTEEEEECTTSEEEEEETTTCCEEEEEECCC---CCSCCCCCEEEEEEE-ETTEE-EEEETTSEEEEEETTTCCEEEEEE
T ss_pred             CCEEEEEcCCCeEEEEEccCCceeeeecCccccccccccCcccccCceE-eCCEE-EEEcCCCEEEEEECCCCCEEEEEe
Confidence            678999998889999994 67654322111         111 112233 35566 9998777899999 678 433222


Q ss_pred             ccCCCcccCCccEEEcCCCcEEEEeCCCCCCcccccccccccCCCceEEEEeCCCCeeEEeeccccc------cceEEEc
Q 026118           87 QFNGSQLRFANDVIEASDGSLYFTVSSTKFTPAEYYLDLVSGEPHGVLLKYDPSTNQTSLVLDGLYF------ANGVALS  160 (243)
Q Consensus        87 ~~~~~~~~~~~~l~~d~~G~l~v~~~~~~~~~~~~~~~~~~~~~~g~v~~~~~~~~~~~~~~~~~~~------~~gi~~~  160 (243)
                       ........|   ++ .+|.+|+++.                  .+.|+.+|+.+|+..........      ....+++
T Consensus       131 -~~~~~~~~p---~~-~~~~v~v~~~------------------~g~l~~~d~~tG~~~W~~~~~~~~~~~~~~~~~~~~  187 (376)
T 3q7m_A          131 -VAGEALSRP---VV-SDGLVLIHTS------------------NGQLQALNEADGAVKWTVNLDMPSLSLRGESAPTTA  187 (376)
T ss_dssp             -CSSCCCSCC---EE-ETTEEEEECT------------------TSEEEEEETTTCCEEEEEECCC-----CCCCCCEEE
T ss_pred             -CCCceEcCC---EE-ECCEEEEEcC------------------CCeEEEEECCCCcEEEEEeCCCCceeecCCCCcEEE
Confidence             211111111   23 3678999743                  35899999988876543221110      1223333


Q ss_pred             CCCCEEEEEEcCCCeEEEEEeecC
Q 026118          161 EDERFLVVCESWKFRCVKHFLKVS  184 (243)
Q Consensus       161 ~dg~~l~v~~~~~~~i~~~~~~~~  184 (243)
                       ++ .+|+.. .++.|+.++..++
T Consensus       188 -~~-~v~~g~-~~g~l~~~d~~tG  208 (376)
T 3q7m_A          188 -FG-AAVVGG-DNGRVSAVLMEQG  208 (376)
T ss_dssp             -TT-EEEECC-TTTEEEEEETTTC
T ss_pred             -CC-EEEEEc-CCCEEEEEECCCC
Confidence             34 377763 4577888887543

>4aez_A CDC20, WD repeat-containing protein SLP1; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe}

Probab=98.36  E-value=0.00019  Score=59.21  Aligned_cols=176  Identities=11%  Similarity=-0.009  Sum_probs=108.0

Q ss_pred             CcccEEEcCCCc-EEEEeCCCcEEEEc-cCCcee-EecccCCccccceEEccCCCEEEEEeCCCcEEEEe-cC-Cc--EE
Q 026118           11 HPEDVSVDGNGV-LYTATGDGWIKRMH-PNGTWE-DWHQVGSQSLLGLTTTKENNVIIVCDSQQGLLKVS-EE-GV--TV   83 (243)
Q Consensus        11 ~p~~i~~d~~g~-l~~~~~~~~i~~~~-~~g~~~-~~~~~~~~~~~~i~~~~~g~l~~v~~~~~gl~~~~-~~-g~--~~   83 (243)
                      ...++++.++|. |.++..++.|..++ ..++.. .+........ .+.+  ++++++++...+.+..++ .. +.  ..
T Consensus       136 ~v~~v~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~-~~~~--~~~~l~~~~~dg~i~i~d~~~~~~~~~~  212 (401)
T 4aez_A          136 YVASVKWSHDGSFLSVGLGNGLVDIYDVESQTKLRTMAGHQARVG-CLSW--NRHVLSSGSRSGAIHHHDVRIANHQIGT  212 (401)
T ss_dssp             CEEEEEECTTSSEEEEEETTSCEEEEETTTCCEEEEECCCSSCEE-EEEE--ETTEEEEEETTSEEEEEETTSSSCEEEE
T ss_pred             CEEEEEECCCCCEEEEECCCCeEEEEECcCCeEEEEecCCCCceE-EEEE--CCCEEEEEcCCCCEEEEecccCcceeeE
Confidence            345788888885 55666888999998 344433 3322222233 6666  456656766656677777 43 32  22


Q ss_pred             EEeccCCCcccCCccEEEcCCCcEEEEeCCCCCCcccccccccccCCCceEEEEeCCCCeeEEee-ccccccceEEEcCC
Q 026118           84 LVSQFNGSQLRFANDVIEASDGSLYFTVSSTKFTPAEYYLDLVSGEPHGVLLKYDPSTNQTSLVL-DGLYFANGVALSED  162 (243)
Q Consensus        84 ~~~~~~~~~~~~~~~l~~d~~G~l~v~~~~~~~~~~~~~~~~~~~~~~g~v~~~~~~~~~~~~~~-~~~~~~~gi~~~~d  162 (243)
                      +..     ....+.++++.++|+++++.+                 ..+.|..+|..+++..... ........++++|+
T Consensus       213 ~~~-----~~~~v~~~~~~~~~~~l~s~~-----------------~d~~v~iwd~~~~~~~~~~~~~~~~v~~~~~~p~  270 (401)
T 4aez_A          213 LQG-----HSSEVCGLAWRSDGLQLASGG-----------------NDNVVQIWDARSSIPKFTKTNHNAAVKAVAWCPW  270 (401)
T ss_dssp             EEC-----CSSCEEEEEECTTSSEEEEEE-----------------TTSCEEEEETTCSSEEEEECCCSSCCCEEEECTT
T ss_pred             EcC-----CCCCeeEEEEcCCCCEEEEEe-----------------CCCeEEEccCCCCCccEEecCCcceEEEEEECCC
Confidence            211     123567889999998776632                 2357888888866554433 33455688999998


Q ss_pred             CCEEEEEEc--CCCeEEEEEeecCCCcceEEeccCCCCCCCceEECCCCCEEEEE
Q 026118          163 ERFLVVCES--WKFRCVKHFLKVSGRTDREIFIDNLPGGPDNVNLARDGSFWISI  215 (243)
Q Consensus       163 g~~l~v~~~--~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~i~~d~~G~lwv~~  215 (243)
                      +..++++..  .++.|..|+......  ...+.  .......++++++|+..++.
T Consensus       271 ~~~ll~~~~gs~d~~i~i~d~~~~~~--~~~~~--~~~~v~~~~~s~~~~~l~~~  321 (401)
T 4aez_A          271 QSNLLATGGGTMDKQIHFWNAATGAR--VNTVD--AGSQVTSLIWSPHSKEIMST  321 (401)
T ss_dssp             STTEEEEECCTTTCEEEEEETTTCCE--EEEEE--CSSCEEEEEECSSSSEEEEE
T ss_pred             CCCEEEEecCCCCCEEEEEECCCCCE--EEEEe--CCCcEEEEEECCCCCeEEEE
Confidence            876777654  578899999764321  12221  12235567788888755543

>3q7m_A Lipoprotein YFGL, BAMB; beta-propeller, BAM complex, outer membrane protein folding, negative, BAMA, protein binding; 1.65A {Escherichia coli} PDB: 3q7n_A 3q7o_A 3p1l_A 3prw_A 2yh3_A 3q54_A

Probab=98.35  E-value=2.5e-05  Score=63.93  Aligned_cols=166  Identities=13%  Similarity=0.033  Sum_probs=95.1

Q ss_pred             CCcEEEEeCCCcEEEEcc-CCceeEecccCCcc------------ccceEEccCCCEEEEEeCCCcEEEEe-cCC-cEEE
Q 026118           20 NGVLYTATGDGWIKRMHP-NGTWEDWHQVGSQS------------LLGLTTTKENNVIIVCDSQQGLLKVS-EEG-VTVL   84 (243)
Q Consensus        20 ~g~l~~~~~~~~i~~~~~-~g~~~~~~~~~~~~------------~~~i~~~~~g~l~~v~~~~~gl~~~~-~~g-~~~~   84 (243)
                      ++.+|++..++.|+.+++ +|+....... ..+            .....+ .++.+ |++....+++.++ .+| ....
T Consensus       188 ~~~v~~g~~~g~l~~~d~~tG~~~w~~~~-~~~~~~~~~~~~~~~~~~p~~-~~~~v-~~~~~~g~l~~~d~~tG~~~w~  264 (376)
T 3q7m_A          188 FGAAVVGGDNGRVSAVLMEQGQMIWQQRI-SQATGSTEIDRLSDVDTTPVV-VNGVV-FALAYNGNLTALDLRSGQIMWK  264 (376)
T ss_dssp             TTEEEECCTTTEEEEEETTTCCEEEEEEC-CC-----------CCCCCCEE-ETTEE-EEECTTSCEEEEETTTCCEEEE
T ss_pred             CCEEEEEcCCCEEEEEECCCCcEEEEEec-ccCCCCcccccccccCCCcEE-ECCEE-EEEecCcEEEEEECCCCcEEee
Confidence            678999988889999994 6765432211 111            102222 34566 9988777899999 677 3322


Q ss_pred             EeccCCCcccCCccEEEcCCCcEEEEeCCCCCCcccccccccccCCCceEEEEeCCCCeeEEeecc--ccccceEEEcCC
Q 026118           85 VSQFNGSQLRFANDVIEASDGSLYFTVSSTKFTPAEYYLDLVSGEPHGVLLKYDPSTNQTSLVLDG--LYFANGVALSED  162 (243)
Q Consensus        85 ~~~~~~~~~~~~~~l~~d~~G~l~v~~~~~~~~~~~~~~~~~~~~~~g~v~~~~~~~~~~~~~~~~--~~~~~gi~~~~d  162 (243)
                      .. .     ....++.++ ++++|+++.                  .+.|+.+|+++++.......  ......+++. +
T Consensus       265 ~~-~-----~~~~~~~~~-~~~l~~~~~------------------~g~l~~~d~~tG~~~w~~~~~~~~~~~~~~~~-~  318 (376)
T 3q7m_A          265 RE-L-----GSVNDFIVD-GNRIYLVDQ------------------NDRVMALTIDGGVTLWTQSDLLHRLLTSPVLY-N  318 (376)
T ss_dssp             EC-C-----CCEEEEEEE-TTEEEEEET------------------TCCEEEEETTTCCEEEEECTTTTSCCCCCEEE-T
T ss_pred             cc-C-----CCCCCceEE-CCEEEEEcC------------------CCeEEEEECCCCcEEEeecccCCCcccCCEEE-C
Confidence            21 1     112244443 678999853                  35799999998876543331  1122333433 3


Q ss_pred             CCEEEEEEcCCCeEEEEEeecCCCcceEEeccCCCCCCCceEECCCCCEEEEEecCC
Q 026118          163 ERFLVVCESWKFRCVKHFLKVSGRTDREIFIDNLPGGPDNVNLARDGSFWISIIKMD  219 (243)
Q Consensus       163 g~~l~v~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~i~~d~~G~lwv~~~~~~  219 (243)
                      + .||+.. .++.|+.++..++.........  .......... .+|+||+++..+.
T Consensus       319 ~-~l~v~~-~~g~l~~~d~~tG~~~~~~~~~--~~~~~~~~~~-~~~~l~v~~~~G~  370 (376)
T 3q7m_A          319 G-NLVVGD-SEGYLHWINVEDGRFVAQQKVD--SSGFQTEPVA-ADGKLLIQAKDGT  370 (376)
T ss_dssp             T-EEEEEC-TTSEEEEEETTTCCEEEEEECC--TTCBCSCCEE-ETTEEEEEBTTSC
T ss_pred             C-EEEEEe-CCCeEEEEECCCCcEEEEEecC--CCcceeCCEE-ECCEEEEEeCCCE
Confidence            4 599885 4578999997654332221110  1111222333 4678999887654

>3dw8_B Serine/threonine-protein phosphatase 2A 55 kDa RE subunit B alpha isoform; holoenzyme, PR55, WD repeat, hydrolase, iron, manganese binding, methylation, phosphoprotein, protein phosphatase; HET: 1ZN; 2.85A {Homo sapiens}

Probab=98.35  E-value=0.00017  Score=59.96  Aligned_cols=187  Identities=10%  Similarity=0.091  Sum_probs=105.7

Q ss_pred             cccEEEcCCCcEE-EEeCCCcEEEEcc-CCc------------eeEecccC-----------CccccceEEccCC--CEE
Q 026118           12 PEDVSVDGNGVLY-TATGDGWIKRMHP-NGT------------WEDWHQVG-----------SQSLLGLTTTKEN--NVI   64 (243)
Q Consensus        12 p~~i~~d~~g~l~-~~~~~~~i~~~~~-~g~------------~~~~~~~~-----------~~~~~~i~~~~~g--~l~   64 (243)
                      -.+++++++|.+. ++..++.|..++. .++            ...+....           ..+...+++.+++  .++
T Consensus        31 V~~v~~s~~g~~la~g~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~V~~l~~~~~~~~~~l  110 (447)
T 3dw8_B           31 ISTVEFNHSGELLATGDKGGRVVIFQQEQENKIQSHSRGEYNVYSTFQSHEPEFDYLKSLEIEEKINKIRWLPQKNAAQF  110 (447)
T ss_dssp             EEEEEECSSSSEEEEEETTSEEEEEEECC-----CCCCCCEEEEEEEECCCCEEEGGGTEEECCCCCEEEECCCCSSSEE
T ss_pred             EEEEEECCCCCEEEEEcCCCeEEEEEecCCCCCCcccccceeEecccccccccccccccccccCceEEEEEcCCCCcceE
Confidence            3468889988644 5568888988883 332            22222111           0223378999987  564


Q ss_pred             EEEeCCCcEEEEe-cCC-cEEE------------------------------------EeccCCCcccCCccEEEcCCCc
Q 026118           65 IVCDSQQGLLKVS-EEG-VTVL------------------------------------VSQFNGSQLRFANDVIEASDGS  106 (243)
Q Consensus        65 ~v~~~~~gl~~~~-~~g-~~~~------------------------------------~~~~~~~~~~~~~~l~~d~~G~  106 (243)
                      .++..++.|..++ .++ ....                                    ...........+.++++.++|+
T Consensus       111 ~s~s~d~~i~iw~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~  190 (447)
T 3dw8_B          111 LLSTNDKTIKLWKISERDKRPEGYNLKEEDGRYRDPTTVTTLRVPVFRPMDLMVEASPRRIFANAHTYHINSISINSDYE  190 (447)
T ss_dssp             EEEECSSCEEEEEEEEEEEEEECCSCC--------CCCCCSCCCCEEEEEEEEEEEEEEEEECSCCSSCCCEEEECTTSS
T ss_pred             EEeCCCCeEEEEecccccCCcceecccCccccccCcccccceEeccccchheeeeccceEEeccCCCcceEEEEEcCCCC
Confidence            6666555566666 332 1100                                    0000111224567899999999


Q ss_pred             EEEEeCCCCCCcccccccccccCCCceEEEEeCCC-CeeEEe--------eccccccceEEEcCCC-CEEEEEEcCCCeE
Q 026118          107 LYFTVSSTKFTPAEYYLDLVSGEPHGVLLKYDPST-NQTSLV--------LDGLYFANGVALSEDE-RFLVVCESWKFRC  176 (243)
Q Consensus       107 l~v~~~~~~~~~~~~~~~~~~~~~~g~v~~~~~~~-~~~~~~--------~~~~~~~~gi~~~~dg-~~l~v~~~~~~~i  176 (243)
                      ++++.                  ..+.|..+|..+ ++....        .........++++|++ + ++++...++.|
T Consensus       191 ~l~s~------------------~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~-~l~s~~~dg~i  251 (447)
T 3dw8_B          191 TYLSA------------------DDLRINLWHLEITDRSFNIVDIKPANMEELTEVITAAEFHPNSCN-TFVYSSSKGTI  251 (447)
T ss_dssp             EEEEE------------------CSSEEEEEETTEEEEEEEEEECCCSSGGGCCCCEEEEEECSSCTT-EEEEEETTSCE
T ss_pred             EEEEe------------------CCCeEEEEECCCCCceeeeeecccccccccCcceEEEEECCCCCc-EEEEEeCCCeE
Confidence            88763                  135777788762 222221        1222346789999998 7 44444567889


Q ss_pred             EEEEeecCCCc--ceEEeccCCC-----------CCCCceEECCCCCEEEEEec
Q 026118          177 VKHFLKVSGRT--DREIFIDNLP-----------GGPDNVNLARDGSFWISIIK  217 (243)
Q Consensus       177 ~~~~~~~~~~~--~~~~~~~~~~-----------~~~~~i~~d~~G~lwv~~~~  217 (243)
                      ..|+.......  ....+.....           +....++++++|++.++...
T Consensus       252 ~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~  305 (447)
T 3dw8_B          252 RLCDMRASALCDRHSKLFEEPEDPSNRSFFSEIISSISDVKFSHSGRYMMTRDY  305 (447)
T ss_dssp             EEEETTTCSSSCTTCEEECCC-----CCHHHHHTTCEEEEEECTTSSEEEEEES
T ss_pred             EEEECcCCccccceeeEeccCCCccccccccccCceEEEEEECCCCCEEEEeeC
Confidence            99998654321  1233321111           13566899999987666554

>3b7f_A Glycosyl hydrolase, BNR repeat; 7-bladed beta-propeller fold, structural genomics, joint CEN structural genomics, JCSG; 2.20A {Ralstonia eutropha}

Probab=98.35  E-value=2e-05  Score=65.21  Aligned_cols=174  Identities=13%  Similarity=0.050  Sum_probs=97.3

Q ss_pred             cCCCcEEEEeCCCcEEEEcc-C--CceeEec--ccCCccccceEEcc--CCCEEEEEeCCC----cEEEEecCC--cEEE
Q 026118           18 DGNGVLYTATGDGWIKRMHP-N--GTWEDWH--QVGSQSLLGLTTTK--ENNVIIVCDSQQ----GLLKVSEEG--VTVL   84 (243)
Q Consensus        18 d~~g~l~~~~~~~~i~~~~~-~--g~~~~~~--~~~~~~~~~i~~~~--~g~l~~v~~~~~----gl~~~~~~g--~~~~   84 (243)
                      |.+++||+++..| +++++. +  .++....  ....... +|++|+  .+++ |++....    +|++.++.|  .+.+
T Consensus        20 d~~g~l~vgt~~G-l~~~~~~~~g~~W~~~~~~~~~~~v~-~i~~dp~~~~~l-~~g~~~g~~g~gl~~s~D~G~tW~~~   96 (394)
T 3b7f_A           20 SGPVMLLVATIKG-AWFLASDPARRTWELRGPVFLGHTIH-HIVQDPREPERM-LMAARTGHLGPTVFRSDDGGGNWTEA   96 (394)
T ss_dssp             CSCCEEEEEETTE-EEEEEECTTSCSEEEEEEESTTSEEE-EEEECSSSTTCE-EEEEEC--CCEEEEEESSTTSCCEEC
T ss_pred             CCCCEEEEEecCc-eEEEECCCCCCCceECCccCCCCceE-EEEECCCCCCeE-EEEecCCCCCccEEEeCCCCCCceEC
Confidence            5578999999754 777763 3  3555432  1122334 889998  6777 9988654    688876544  4443


Q ss_pred             Eecc--CCC-------cccCCccEEEcC---CCcEEEEeCCCCCCcccccccccccCCCceEEEEeCCCCeeEEeecc--
Q 026118           85 VSQF--NGS-------QLRFANDVIEAS---DGSLYFTVSSTKFTPAEYYLDLVSGEPHGVLLKYDPSTNQTSLVLDG--  150 (243)
Q Consensus        85 ~~~~--~~~-------~~~~~~~l~~d~---~G~l~v~~~~~~~~~~~~~~~~~~~~~~g~v~~~~~~~~~~~~~~~~--  150 (243)
                      ....  ...       ....+.+|++++   .+.+|++..                  .++||+.+..+..++.+...  
T Consensus        97 ~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~l~~g~~------------------~ggl~~S~DgG~tW~~~~~~~~  158 (394)
T 3b7f_A           97 TRPPAFNKAPEGETGRVVDHVFWLTPGHASEPGTWYAGTS------------------PQGLFRSTDHGASWEPVAGFND  158 (394)
T ss_dssp             SBCCCCCCCC----CCCCCEEEEEEECCTTSTTCEEEEEE------------------TTEEEEESSTTSBCEECHHHHT
T ss_pred             CccccCCCcccccccccccceeEEEeCCCCCCCEEEEEec------------------CCcEEEEcCCCCCeEECcCccC
Confidence            2211  110       011344678886   578999742                  25799987765566654211  


Q ss_pred             -----------------ccccceEEEcCC-CCEEEEEEcCCCeEEEEEeecCCCcceEEeccCCC------------CCC
Q 026118          151 -----------------LYFANGVALSED-ERFLVVCESWKFRCVKHFLKVSGRTDREIFIDNLP------------GGP  200 (243)
Q Consensus       151 -----------------~~~~~gi~~~~d-g~~l~v~~~~~~~i~~~~~~~~~~~~~~~~~~~~~------------~~~  200 (243)
                                       ......|++++. .+.||++.. .+.|++.+-.+   ..++.+.....            ...
T Consensus       159 ~p~~~~~~~~~~~g~~~~~~i~~i~~d~~~~~~l~vg~~-~ggl~~s~DgG---~tW~~~~~~~~~~~~p~~~~~~g~~~  234 (394)
T 3b7f_A          159 HPMRRAWTGGEQDGTPDGPKMHSILVDPRDPKHLYIGMS-SGGVFESTDAG---TDWKPLNRGCAANFLPDPNVEFGHDP  234 (394)
T ss_dssp             CTTHHHHHCCC----CCCCEEEEEEECTTCTTCEEEEEE-TBEEEEESSTT---SSCEECCTTCCCTTSSSSSSSSCBCE
T ss_pred             CccccccccccccCCCCCCceeEEEECCCCCCEEEEEEC-CCCEEEECCCC---CCceECCCCccccccCCCccccCcce
Confidence                             011246888873 344898854 34576653222   22232221110            013


Q ss_pred             CceEECCC--CCEEEEEe
Q 026118          201 DNVNLARD--GSFWISII  216 (243)
Q Consensus       201 ~~i~~d~~--G~lwv~~~  216 (243)
                      ..|+++++  +.||+++.
T Consensus       235 ~~i~~~~~~~~~l~vg~~  252 (394)
T 3b7f_A          235 HCVVQHPAAPDILYQQNH  252 (394)
T ss_dssp             EEEEECSSSTTEEEEEET
T ss_pred             eEEEECCCCCCEEEEEcC
Confidence            45778875  67898764

>3jro_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum, transport, membrane, mRNA transport; 4.00A {Saccharomyces cerevisiae}

Probab=98.34  E-value=8.9e-05  Score=66.65  Aligned_cols=193  Identities=16%  Similarity=0.093  Sum_probs=108.8

Q ss_pred             ecccccCCcccEEEcCCCc-EEEEeCCCcEEEEcc-CCceeEe--cccCCccccceEEccC--CCEEEEEeCCCcEEEEe
Q 026118            4 LGEGIVNHPEDVSVDGNGV-LYTATGDGWIKRMHP-NGTWEDW--HQVGSQSLLGLTTTKE--NNVIIVCDSQQGLLKVS   77 (243)
Q Consensus         4 ~~~g~~~~p~~i~~d~~g~-l~~~~~~~~i~~~~~-~g~~~~~--~~~~~~~~~~i~~~~~--g~l~~v~~~~~gl~~~~   77 (243)
                      +..|.-..-.+++++++|. |.++..++.|..++. .++....  ......+..++.++++  ++++.++..++.|..++
T Consensus         4 ~l~gH~~~V~~l~~s~dg~~latg~~dg~I~vwd~~~~~~~~~~~l~~h~~~V~~l~~s~~~~~~~l~s~s~Dg~I~vwd   83 (753)
T 3jro_A            4 IANAHNELIHDAVLDYYGKRLATCSSDKTIKIFEVEGETHKLIDTLTGHEGPVWRVDWAHPKFGTILASCSYDGKVLIWK   83 (753)
T ss_dssp             ----CCCCEEEECCCSSSCCEEEEETTTEEEEEEEETTEEEEEEEECCCSSCEEEEEECCTTSCSEEEEEETTSCEEEEE
T ss_pred             ecccCcceeEEEEECCCCCeEEEEECCCcEEEEecCCCCCccceeccCCcCceEEEEecCCCCCCEEEEEeCCCeEEEEE
Confidence            3444334556788888885 556668888998883 2222211  1111223337888876  88856766655677777


Q ss_pred             -cCC-cEEEEeccCCCcccCCccEEEcCC--CcEEEEeCCCCCCcccccccccccCCCceEEEEeCCCCee---EEeecc
Q 026118           78 -EEG-VTVLVSQFNGSQLRFANDVIEASD--GSLYFTVSSTKFTPAEYYLDLVSGEPHGVLLKYDPSTNQT---SLVLDG  150 (243)
Q Consensus        78 -~~g-~~~~~~~~~~~~~~~~~~l~~d~~--G~l~v~~~~~~~~~~~~~~~~~~~~~~g~v~~~~~~~~~~---~~~~~~  150 (243)
                       .++ ...+... .. ....+.++++.|+  |+++++.+                 ..+.|..+|..++..   ..+...
T Consensus        84 ~~~~~~~~~~~~-~~-h~~~V~~v~~sp~~~~~~l~sgs-----------------~dg~I~vwdl~~~~~~~~~~~~~~  144 (753)
T 3jro_A           84 EENGRWSQIAVH-AV-HSASVNSVQWAPHEYGPLLLVAS-----------------SDGKVSVVEFKENGTTSPIIIDAH  144 (753)
T ss_dssp             EETTEEEEEEEE-CC-CSSCEEEEEECCGGGCSEEEEEE-----------------TTSEEEEEECCSSSCCCCEEEECC
T ss_pred             CCCCcccccccc-cC-CCCCeEEEEECCCCCCCEEEEEe-----------------CCCcEEEEEeecCCCcceeEeecC
Confidence             555 3332221 11 1245678899998  87666532                 235777788765521   222233


Q ss_pred             ccccceEEEcC-------------CCCEEEEEEcCCCeEEEEEeecCCCc-ceEEeccCCCCCCCceEECCC---CCEEE
Q 026118          151 LYFANGVALSE-------------DERFLVVCESWKFRCVKHFLKVSGRT-DREIFIDNLPGGPDNVNLARD---GSFWI  213 (243)
Q Consensus       151 ~~~~~gi~~~~-------------dg~~l~v~~~~~~~i~~~~~~~~~~~-~~~~~~~~~~~~~~~i~~d~~---G~lwv  213 (243)
                      ......++++|             +++.++++ ..++.|..|+....... ..........+....+++.++   |++.+
T Consensus       145 ~~~v~~l~~~p~~~~~~~~~~~~~d~~~l~sg-s~dg~I~iwd~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~~~~l~  223 (753)
T 3jro_A          145 AIGVNSASWAPATIEEDGEHNGTKESRKFVTG-GADNLVKIWKYNSDAQTYVLESTLEGHSDWVRDVAWSPTVLLRSYLA  223 (753)
T ss_dssp             SSCEEEEEECCCC---------CGGGCCEEEE-ETTSCEEEEEEETTTTEEEEEEEECCCSSCEEEEEECCCCSSSEEEE
T ss_pred             CCceEEEEecCcccccccccccCCCCCEEEEE-ECCCeEEEEeccCCcccceeeeeecCCCCcEEEEEeccCCCCCCEEE
Confidence            34567788988             47755555 56788999998754221 111111122233556788887   66544


Q ss_pred             EEe
Q 026118          214 SII  216 (243)
Q Consensus       214 ~~~  216 (243)
                      +..
T Consensus       224 s~s  226 (753)
T 3jro_A          224 SVS  226 (753)
T ss_dssp             EEE
T ss_pred             EEe
Confidence            443

>3amr_A 3-phytase; beta-propeller, phytate, MYO-inositol hexasulfate, hydrolase-hydrolase inhibitor complex; HET: IHS; 1.25A {Bacillus subtilis} PDB: 3ams_A* 2poo_A 1poo_A 1qlg_A 1h6l_A 1cvm_A

Probab=98.34  E-value=4.2e-05  Score=61.93  Aligned_cols=180  Identities=8%  Similarity=0.061  Sum_probs=95.5

Q ss_pred             CCCcEEEEe-CCCcEEEEccCCceeEecccCCccccceEEccC----CC---EEEEEeCC---CcEEEE--e-cCC-cEE
Q 026118           19 GNGVLYTAT-GDGWIKRMHPNGTWEDWHQVGSQSLLGLTTTKE----NN---VIIVCDSQ---QGLLKV--S-EEG-VTV   83 (243)
Q Consensus        19 ~~g~l~~~~-~~~~i~~~~~~g~~~~~~~~~~~~~~~i~~~~~----g~---l~~v~~~~---~gl~~~--~-~~g-~~~   83 (243)
                      +...+++++ ..++++.+|.+|+....... ++++ ++.+-++    |+   ++++++..   +.|..|  | .++ ++.
T Consensus        38 p~~s~ii~t~k~~gL~Vydl~G~~l~~~~~-g~~n-nVD~r~~~~l~g~~~dla~as~R~~~~n~l~vf~iDp~~~~l~~  115 (355)
T 3amr_A           38 PQNSKLITTNKKSGLVVYSLDGKMLHSYNT-GKLN-NVDIRYDFPLNGKKVDIAAASNRSEGKNTIEIYAIDGKNGTLQS  115 (355)
T ss_dssp             GGGCEEEEEETTTEEEEEETTSCEEEEECC-SCEE-EEEEEEEEEETTEEEEEEEEEECSTTCCEEEEEEECTTTCCEEE
T ss_pred             CCccEEEEEcCCCCEEEEcCCCcEEEEccC-CCcc-cEEEecccccCCceEeEEEEeCCCCCCCeEEEEEECCCCCceee
Confidence            344567766 67889999988876665432 4455 5443331    22   44666654   335444  5 344 333


Q ss_pred             EEec--cCCCcccCCccEEE--cCC-Cc--EEEEeCCCCCCcccccccccccCCCceEEE--EeC-CCCee----EEeec
Q 026118           84 LVSQ--FNGSQLRFANDVIE--ASD-GS--LYFTVSSTKFTPAEYYLDLVSGEPHGVLLK--YDP-STNQT----SLVLD  149 (243)
Q Consensus        84 ~~~~--~~~~~~~~~~~l~~--d~~-G~--l~v~~~~~~~~~~~~~~~~~~~~~~g~v~~--~~~-~~~~~----~~~~~  149 (243)
                      +...  +.+.....|.++|.  ++. |.  +|+++                  .++.+..  +.. ..+..    .+-..
T Consensus       116 i~~~~~pv~t~~~~pyGlcly~~~~~g~~yafV~~------------------k~G~~~q~~l~~~~~g~~~~~lVR~f~  177 (355)
T 3amr_A          116 MTDPDHPIATAINEVYGFTLYHSQKTGKYYAMVTG------------------KEGEFEQYELKADKNGYISGKKVRAFK  177 (355)
T ss_dssp             CSCTTSCEECCCSSCCCEEEEECTTTCCEEEEEEC------------------SSSEEEEEEEEECTTSCEEEEEEEEEE
T ss_pred             ccccccCcCCCCCCeeEEEEEecCCCCcEEEEEEC------------------CCCeEEEEEEEeCCCCcccceEEEEec
Confidence            3211  10122357888888  774 55  44442                  2244443  322 22322    11122


Q ss_pred             cccccceEEEcCCCCEEEEEEcCCCeEEEEEeecCCCcceEEecc----CCCCCCCceEEC--CCCC-EEEEEecCC
Q 026118          150 GLYFANGVALSEDERFLVVCESWKFRCVKHFLKVSGRTDREIFID----NLPGGPDNVNLA--RDGS-FWISIIKMD  219 (243)
Q Consensus       150 ~~~~~~gi~~~~dg~~l~v~~~~~~~i~~~~~~~~~~~~~~~~~~----~~~~~~~~i~~d--~~G~-lwv~~~~~~  219 (243)
                      -...+.++++|+....||+++.. ..||+|+.+...-...+.+..    ....-+.||++.  ++|+ .+++..++.
T Consensus       178 lgsq~EgcvvDd~~g~Lyv~eEd-~GIw~~da~p~~~~~~~~v~~~~~g~l~aDvEGLai~~~~~g~gyLivSsQG~  253 (355)
T 3amr_A          178 MNSQTEGMAADDEYGRLYIAEED-EAIWKFSAEPDGGSNGTVIDRADGRHLTRDIEGLTIYYAADGKGYLMASSQGN  253 (355)
T ss_dssp             CSSCEEEEEEETTTTEEEEEETT-TEEEEEECSTTSCSCCEEEEEBSSSSBCSCEEEEEEEECGGGCEEEEEEEGGG
T ss_pred             CCCCcceEEEcCCCCeEEEeccc-ceEEEEeCCcCCCCCceEEEEecCCccccCcceEEEEecCCCCEEEEEEcCCC
Confidence            23467899999988889999876 669999976432112122211    111246788884  4544 444444443

>1xfd_A DIP, dipeptidyl aminopeptidase-like protein 6, dipeptidylpeptidase 6; DPPX, DPP6, KV4, KV, KAF, membrane protein; HET: NDG NAG BMA MAN; 3.00A {Homo sapiens} SCOP: b.70.3.1 c.69.1.24

Probab=98.32  E-value=8.4e-05  Score=66.05  Aligned_cols=149  Identities=9%  Similarity=-0.003  Sum_probs=77.0

Q ss_pred             ceEEccCCCEEEEEeCC----CcEEEEe-cCC-cEEEEecc-CCCcccCCccEEEcCCCc-EEEE-eCCCCCCccccccc
Q 026118           54 GLTTTKENNVIIVCDSQ----QGLLKVS-EEG-VTVLVSQF-NGSQLRFANDVIEASDGS-LYFT-VSSTKFTPAEYYLD  124 (243)
Q Consensus        54 ~i~~~~~g~l~~v~~~~----~gl~~~~-~~g-~~~~~~~~-~~~~~~~~~~l~~d~~G~-l~v~-~~~~~~~~~~~~~~  124 (243)
                      .+++++||+++++....    ..|+.++ .++ ...+.... .+........++++|||+ +++. ....+         
T Consensus       259 ~~~~SpDg~~l~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~---------  329 (723)
T 1xfd_A          259 MVKWATSTKVAVTWLNRAQNVSILTLCDATTGVCTKKHEDESEAWLHRQNEEPVFSKDGRKFFFIRAIPQG---------  329 (723)
T ss_dssp             EEEESSSSEEEEEEEETTSCEEEEEEEETTTCCEEEEEEEECSSCCCCCCCCCEECTTSCSEEEEEEECCS---------
T ss_pred             EEEEeCCCeEEEEEEcCCCCeEEEEEEeCCCCcceEEEEeccCCEEeccCCCceEcCCCCeEEEEEecccC---------
Confidence            68899999974344322    2377778 566 44433211 111000123678999997 4443 21100         


Q ss_pred             ccccCCCceEEEEe-CCCCe---eEEeecccccc-ceEEEcCCCCEEEEEEcCC--C--eEEEEEeecCCCcceEEeccC
Q 026118          125 LVSGEPHGVLLKYD-PSTNQ---TSLVLDGLYFA-NGVALSEDERFLVVCESWK--F--RCVKHFLKVSGRTDREIFIDN  195 (243)
Q Consensus       125 ~~~~~~~g~v~~~~-~~~~~---~~~~~~~~~~~-~gi~~~~dg~~l~v~~~~~--~--~i~~~~~~~~~~~~~~~~~~~  195 (243)
                        .......|+.++ .++++   .+.+..+.... ..++++|||+.||++....  .  .|+.++.++..  ....+...
T Consensus       330 --~~~~~~~l~~~d~~~~~~~~~~~~l~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~l~~~~~~~~~--~~~~l~~~  405 (723)
T 1xfd_A          330 --GRGKFYHITVSSSQPNSSNDNIQSITSGDWDVTKILAYDEKGNKIYFLSTEDLPRRRQLYSANTVGNF--NRQCLSCD  405 (723)
T ss_dssp             --SSSCEEEEEEECSSCCSSSCCCCBSCCSSSCEEEEEEEETTTTEEEEEESSSCTTCCEEEEECSSTTC--CCBCSSTT
T ss_pred             --CCcceeEEEEEeccCCCCccceeEeecCCeEEEeeeEEcCCCCEEEEEEcCCCCcceEEEEEeCCCCC--Ccceeccc
Confidence              000123699999 55555   45444322222 2368999999998775433  3  45555433311  11111111


Q ss_pred             --CCCCCCceEECCCCCEEEEE
Q 026118          196 --LPGGPDNVNLARDGSFWISI  215 (243)
Q Consensus       196 --~~~~~~~i~~d~~G~lwv~~  215 (243)
                        .......++++++|+.++..
T Consensus       406 ~~~~~~~~~~~~spdg~~l~~~  427 (723)
T 1xfd_A          406 LVENCTYFSASFSHSMDFFLLK  427 (723)
T ss_dssp             SSSSCCCCEEEECTTSSEEEEE
T ss_pred             ccCCCCeEEEEECCCCCEEEEE
Confidence              12234568889998865544

>3mmy_A MRNA export factor; mRNA export, nuclear protein; HET: MES; 1.65A {Homo sapiens}

Probab=98.32  E-value=0.00025  Score=56.96  Aligned_cols=209  Identities=12%  Similarity=0.002  Sum_probs=104.6

Q ss_pred             CcccEEEcCCCc-EEEEeCCCcEEEEc-cCCceeEecccCCccccceEE--ccCCCEEEEEeCCCcEEEEe-cCC--cEE
Q 026118           11 HPEDVSVDGNGV-LYTATGDGWIKRMH-PNGTWEDWHQVGSQSLLGLTT--TKENNVIIVCDSQQGLLKVS-EEG--VTV   83 (243)
Q Consensus        11 ~p~~i~~d~~g~-l~~~~~~~~i~~~~-~~g~~~~~~~~~~~~~~~i~~--~~~g~l~~v~~~~~gl~~~~-~~g--~~~   83 (243)
                      ...++++.+++. |+++..++.|..++ ..++............ ++.+  ++++++++++..++.+..++ .++  ...
T Consensus        88 ~v~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~v~-~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~  166 (368)
T 3mmy_A           88 PVLDVCWSDDGSKVFTASCDKTAKMWDLSSNQAIQIAQHDAPVK-TIHWIKAPNYSCVMTGSWDKTLKFWDTRSSNPMMV  166 (368)
T ss_dssp             CEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEEEEECSSCEE-EEEEEECSSCEEEEEEETTSEEEEECSSCSSCSEE
T ss_pred             CEEEEEECcCCCEEEEEcCCCcEEEEEcCCCCceeeccccCceE-EEEEEeCCCCCEEEEccCCCcEEEEECCCCcEEEE
Confidence            455788888885 55666888899998 4555444333223334 7888  88988756666555677777 555  333


Q ss_pred             EEeccCCC--cccCCccEEEcCCCcEEEEeCCCC------------CCccccc---------ccccccCCCceEEEEeCC
Q 026118           84 LVSQFNGS--QLRFANDVIEASDGSLYFTVSSTK------------FTPAEYY---------LDLVSGEPHGVLLKYDPS  140 (243)
Q Consensus        84 ~~~~~~~~--~~~~~~~l~~d~~G~l~v~~~~~~------------~~~~~~~---------~~~~~~~~~g~v~~~~~~  140 (243)
                      +.......  ......-+....++.+.+-+....            +......         ..+......+.|..++.+
T Consensus       167 ~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dg~i~i~~~~  246 (368)
T 3mmy_A          167 LQLPERCYCADVIYPMAVVATAERGLIVYQLENQPSEFRRIESPLKHQHRCVAIFKDKQNKPTGFALGSIEGRVAIHYIN  246 (368)
T ss_dssp             EECSSCEEEEEEETTEEEEEEGGGCEEEEECSSSCEEEEECCCSCSSCEEEEEEEECTTSCEEEEEEEETTSEEEEEESS
T ss_pred             EecCCCceEEEecCCeeEEEeCCCcEEEEEeccccchhhhccccccCCCceEEEcccCCCCCCeEEEecCCCcEEEEecC
Confidence            32110000  000111112222333332221100            0000000         001222334556666665


Q ss_pred             CCee----EEeecccc------------ccceEEEcCCCCEEEEEEcCCCeEEEEEeecCCCcceEEeccCCCCCCCceE
Q 026118          141 TNQT----SLVLDGLY------------FANGVALSEDERFLVVCESWKFRCVKHFLKVSGRTDREIFIDNLPGGPDNVN  204 (243)
Q Consensus       141 ~~~~----~~~~~~~~------------~~~gi~~~~dg~~l~v~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~i~  204 (243)
                      ....    ..+.....            ....++++|++++|+.+ ..++.|..|+....  .....+. ........++
T Consensus       247 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~s~-~~dg~i~iwd~~~~--~~~~~~~-~~~~~v~~~~  322 (368)
T 3mmy_A          247 PPNPAKDNFTFKCHRSNGTNTSAPQDIYAVNGIAFHPVHGTLATV-GSDGRFSFWDKDAR--TKLKTSE-QLDQPISACC  322 (368)
T ss_dssp             CSCHHHHSEEEECSEEC----CCCEEECCEEEEEECTTTCCEEEE-ETTSCEEEEETTTT--EEEEECC-CCSSCEEEEE
T ss_pred             CCCccccceeeeeeecccccccccccccceEEEEEecCCCEEEEE-ccCCeEEEEECCCC--cEEEEec-CCCCCceEEE
Confidence            4321    11111111            36789999999966665 45788999997642  1122221 2233456799


Q ss_pred             ECCCCCEEEEE-ecCCchhhh
Q 026118          205 LARDGSFWISI-IKMDPKGIQ  224 (243)
Q Consensus       205 ~d~~G~lwv~~-~~~~~~~~~  224 (243)
                      ++++|++.++. ..+.....+
T Consensus       323 ~s~~g~~l~~~s~d~~~~~~~  343 (368)
T 3mmy_A          323 FNHNGNIFAYASSYDWSKGHE  343 (368)
T ss_dssp             ECTTSSCEEEEECCCSTTCGG
T ss_pred             ECCCCCeEEEEeccccccccc
Confidence            99999854444 334333333

>3i2n_A WD repeat-containing protein 92; WD40 repeats, structural genomics, structural genomic consortium, SGC, apoptosis, transcription; 1.95A {Homo sapiens}

Probab=98.30  E-value=1.8e-05  Score=63.62  Aligned_cols=148  Identities=14%  Similarity=0.060  Sum_probs=86.4

Q ss_pred             EcCCCc-EEEEeCCCcEEEEcc-CCceeEecccCCccccceEEcc---CCCEEEEEeCCCcEEEEe-cCC--cEEEEe-c
Q 026118           17 VDGNGV-LYTATGDGWIKRMHP-NGTWEDWHQVGSQSLLGLTTTK---ENNVIIVCDSQQGLLKVS-EEG--VTVLVS-Q   87 (243)
Q Consensus        17 ~d~~g~-l~~~~~~~~i~~~~~-~g~~~~~~~~~~~~~~~i~~~~---~g~l~~v~~~~~gl~~~~-~~g--~~~~~~-~   87 (243)
                      +.+++. |.++..++.|..++. .++............ .+.+++   ++++++++...+.+..++ .++  ...+.. .
T Consensus       176 ~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~v~-~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~  254 (357)
T 3i2n_A          176 YNQEERVVCAGYDNGDIKLFDLRNMALRWETNIKNGVC-SLEFDRKDISMNKLVATSLEGKFHVFDMRTQHPTKGFASVS  254 (357)
T ss_dssp             CC-CCCEEEEEETTSEEEEEETTTTEEEEEEECSSCEE-EEEESCSSSSCCEEEEEESTTEEEEEEEEEEETTTEEEEEE
T ss_pred             cCCCCCEEEEEccCCeEEEEECccCceeeecCCCCceE-EEEcCCCCCCCCEEEEECCCCeEEEEeCcCCCcccceeeec
Confidence            456775 445557889999994 444433322223344 889998   888867776655677777 433  222210 1


Q ss_pred             cCCCcccCCccEEEcCCCc-EEEEeCCCCCCcccccccccccCCCceEEEEeCCCCe--------------------eEE
Q 026118           88 FNGSQLRFANDVIEASDGS-LYFTVSSTKFTPAEYYLDLVSGEPHGVLLKYDPSTNQ--------------------TSL  146 (243)
Q Consensus        88 ~~~~~~~~~~~l~~d~~G~-l~v~~~~~~~~~~~~~~~~~~~~~~g~v~~~~~~~~~--------------------~~~  146 (243)
                      ..+ ....+.++++.|+|. ++++..                 ..+.|..++...+.                    +..
T Consensus       255 ~~~-~~~~v~~~~~~~~~~~~l~~~~-----------------~dg~i~iwd~~~~~~~~~~~~~g~~~~~~~~~~~~~~  316 (357)
T 3i2n_A          255 EKA-HKSTVWQVRHLPQNRELFLTAG-----------------GAGGLHLWKYEYPIQRSKKDSEGIEMGVAGSVSLLQN  316 (357)
T ss_dssp             EEC-CSSCEEEEEEETTEEEEEEEEE-----------------TTSEEEEEEEECCSCC--CCTTSCCCCCCCEEEEEEE
T ss_pred             cCC-CcCCEEEEEECCCCCcEEEEEe-----------------CCCcEEEeecCCCcccccccCCCCccccccccceeec
Confidence            111 124567889999987 555422                 12345444443221                    111


Q ss_pred             eeccccccceEEEcCCCCEEEEEEcCCCeEEEEEeec
Q 026118          147 VLDGLYFANGVALSEDERFLVVCESWKFRCVKHFLKV  183 (243)
Q Consensus       147 ~~~~~~~~~gi~~~~dg~~l~v~~~~~~~i~~~~~~~  183 (243)
                      +.........++|++++++|.++...++.|..|++..
T Consensus       317 ~~~~~~~v~~~~~s~~~~~l~~s~~~d~~i~iw~~~~  353 (357)
T 3i2n_A          317 VTLSTQPISSLDWSPDKRGLCVCSSFDQTVRVLIVTK  353 (357)
T ss_dssp             EECCSSCEEEEEECSSSTTEEEEEETTSEEEEEEECC
T ss_pred             cccCCCCeeEEEEcCCCCeEEEEecCCCcEEEEECCC
Confidence            2223344678999999997776666778999998754

>2hes_X YDR267CP; beta-propeller, WD40 repeat, biosynthetic protein; 1.70A {Saccharomyces cerevisiae}

Probab=98.30  E-value=0.0002  Score=57.60  Aligned_cols=151  Identities=8%  Similarity=-0.026  Sum_probs=86.6

Q ss_pred             cccEEEcCCCcEE-EEeCCCcEEEEccCC--------cee-EecccCCccccceEEccCCCEEEEEeCCCcEEEEe-cC-
Q 026118           12 PEDVSVDGNGVLY-TATGDGWIKRMHPNG--------TWE-DWHQVGSQSLLGLTTTKENNVIIVCDSQQGLLKVS-EE-   79 (243)
Q Consensus        12 p~~i~~d~~g~l~-~~~~~~~i~~~~~~g--------~~~-~~~~~~~~~~~~i~~~~~g~l~~v~~~~~gl~~~~-~~-   79 (243)
                      -.++++.++|.+. .+..++.|..++...        +.. .+........ +++++++|++|..+..++.+..++ .. 
T Consensus        61 v~~v~~sp~~~~las~s~D~~v~iw~~~~~~~~~~~~~~~~~~~~h~~~V~-~v~~sp~g~~las~s~D~~v~iwd~~~~  139 (330)
T 2hes_X           61 IRSVAWRPHTSLLAAGSFDSTVSIWAKEESADRTFEMDLLAIIEGHENEVK-GVAWSNDGYYLATCSRDKSVWIWETDES  139 (330)
T ss_dssp             EEEEEECTTSSEEEEEETTSCEEEEEC-------CCCEEEEEEC----CEE-EEEECTTSCEEEEEETTSCEEEEECCTT
T ss_pred             EEEEEECCCCCEEEEEeCCCcEEEEEcccCcCccccceeEEEEcCCCCcEE-EEEECCCCCEEEEEeCCCEEEEEeccCC
Confidence            4578899988755 555788898887421        111 1111112234 899999999856666555677777 32 


Q ss_pred             C--cEEEEeccCCCcccCCccEEEcCCCcEEEEeCCCCCCcccccccccccCCCceEEEEeCCCCeeEE---eecccccc
Q 026118           80 G--VTVLVSQFNGSQLRFANDVIEASDGSLYFTVSSTKFTPAEYYLDLVSGEPHGVLLKYDPSTNQTSL---VLDGLYFA  154 (243)
Q Consensus        80 g--~~~~~~~~~~~~~~~~~~l~~d~~G~l~v~~~~~~~~~~~~~~~~~~~~~~g~v~~~~~~~~~~~~---~~~~~~~~  154 (243)
                      +  .+.+.. ..+ ....+.++++.|+++++++.+.                 .+.|..++..++..+.   +.......
T Consensus       140 ~~~~~~~~~-~~~-h~~~v~~v~~~p~~~~l~s~s~-----------------D~~i~iW~~~~~~~~~~~~~~~h~~~v  200 (330)
T 2hes_X          140 GEEYECISV-LQE-HSQDVKHVIWHPSEALLASSSY-----------------DDTVRIWKDYDDDWECVAVLNGHEGTV  200 (330)
T ss_dssp             CCCCEEEEE-ECC-CSSCEEEEEECSSSSEEEEEET-----------------TSCEEEEEEETTEEEEEEEECCCSSCE
T ss_pred             CCCeEEEEE-ecc-CCCceEEEEECCCCCEEEEEcC-----------------CCeEEEEECCCCCeeEEEEccCCCCcE
Confidence            2  232221 111 1235678899999987776432                 2345444443343222   22223445


Q ss_pred             ceEEEcCC--CCEEEEEEcCCCeEEEEEeec
Q 026118          155 NGVALSED--ERFLVVCESWKFRCVKHFLKV  183 (243)
Q Consensus       155 ~gi~~~~d--g~~l~v~~~~~~~i~~~~~~~  183 (243)
                      ..++|+++  +. ..++...++.|..+++..
T Consensus       201 ~~~~~~~~~~~~-~l~s~s~D~~v~iw~~~~  230 (330)
T 2hes_X          201 WSSDFDKTEGVF-RLCSGSDDSTVRVWKYMG  230 (330)
T ss_dssp             EEEEECCSSSSC-EEEEEETTSCEEEEEEEE
T ss_pred             EEEEecCCCCee-EEEEEeCCCeEEEEEecC
Confidence            77899998  55 344445677888888764

>3ei3_B DNA damage-binding protein 2; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Danio rerio} PDB: 3ei1_B* 3ei2_B* 4a08_B* 4a09_B* 4a0a_B* 4a0b_B* 4a0k_D* 4a0l_B*

Probab=98.30  E-value=0.00037  Score=56.81  Aligned_cols=151  Identities=11%  Similarity=-0.010  Sum_probs=96.2

Q ss_pred             CcccEEEcC-CCc-EEEEeCCCcEEEEccCC-ceeEecccC--CccccceEEccCCCEEEEEeCCCcEEEEecCC--cEE
Q 026118           11 HPEDVSVDG-NGV-LYTATGDGWIKRMHPNG-TWEDWHQVG--SQSLLGLTTTKENNVIIVCDSQQGLLKVSEEG--VTV   83 (243)
Q Consensus        11 ~p~~i~~d~-~g~-l~~~~~~~~i~~~~~~g-~~~~~~~~~--~~~~~~i~~~~~g~l~~v~~~~~gl~~~~~~g--~~~   83 (243)
                      ...++++.+ ++. |+++..++.|..++..+ ....+....  ..+...+++++++++++++...+.|..++.++  ...
T Consensus       120 ~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~  199 (383)
T 3ei3_B          120 AITGMKFNQFNTNQLFVSSIRGATTLRDFSGSVIQVFAKTDSWDYWYCCVDVSVSRQMLATGDSTGRLLLLGLDGHEIFK  199 (383)
T ss_dssp             BEEEEEEETTEEEEEEEEETTTEEEEEETTSCEEEEEECCCCSSCCEEEEEEETTTTEEEEEETTSEEEEEETTSCEEEE
T ss_pred             ceeEEEeCCCCCCEEEEEeCCCEEEEEECCCCceEEEeccCCCCCCeEEEEECCCCCEEEEECCCCCEEEEECCCCEEEE
Confidence            345688888 554 55666888899998544 333332211  12233889999999867776655677777434  333


Q ss_pred             EEeccCCCcccCCccEEEcCCCc-EEEEeCCCCCCcccccccccccCCCceEEEEeCCC----CeeEEeeccccccceEE
Q 026118           84 LVSQFNGSQLRFANDVIEASDGS-LYFTVSSTKFTPAEYYLDLVSGEPHGVLLKYDPST----NQTSLVLDGLYFANGVA  158 (243)
Q Consensus        84 ~~~~~~~~~~~~~~~l~~d~~G~-l~v~~~~~~~~~~~~~~~~~~~~~~g~v~~~~~~~----~~~~~~~~~~~~~~gi~  158 (243)
                      +..     ....+.++++++++. ++++.+                 ..+.|..+|..+    +..............++
T Consensus       200 ~~~-----h~~~v~~~~~~~~~~~~l~s~~-----------------~d~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~  257 (383)
T 3ei3_B          200 EKL-----HKAKVTHAEFNPRCDWLMATSS-----------------VDATVKLWDLRNIKDKNSYIAEMPHEKPVNAAY  257 (383)
T ss_dssp             EEC-----SSSCEEEEEECSSCTTEEEEEE-----------------TTSEEEEEEGGGCCSTTCEEEEEECSSCEEEEE
T ss_pred             ecc-----CCCcEEEEEECCCCCCEEEEEe-----------------CCCEEEEEeCCCCCcccceEEEecCCCceEEEE
Confidence            321     123567889999997 666532                 235677777765    33333333445667899


Q ss_pred             EcC-CCCEEEEEEcCCCeEEEEEeecC
Q 026118          159 LSE-DERFLVVCESWKFRCVKHFLKVS  184 (243)
Q Consensus       159 ~~~-dg~~l~v~~~~~~~i~~~~~~~~  184 (243)
                      |++ ++++|+++ ..++.|..|+....
T Consensus       258 ~s~~~~~~l~~~-~~d~~i~iwd~~~~  283 (383)
T 3ei3_B          258 FNPTDSTKLLTT-DQRNEIRVYSSYDW  283 (383)
T ss_dssp             ECTTTSCEEEEE-ESSSEEEEEETTBT
T ss_pred             EcCCCCCEEEEE-cCCCcEEEEECCCC
Confidence            999 99966655 45789999998653

>2j04_A TAU60, YPL007P, hypothetical protein YPL007C; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae}

Probab=98.30  E-value=6e-05  Score=65.03  Aligned_cols=181  Identities=12%  Similarity=0.013  Sum_probs=101.2

Q ss_pred             CcccEEEcCCCcEEEEe-CCCcE------------------EEEccCCceeEecc------------cCCccccceEEcc
Q 026118           11 HPEDVSVDGNGVLYTAT-GDGWI------------------KRMHPNGTWEDWHQ------------VGSQSLLGLTTTK   59 (243)
Q Consensus        11 ~p~~i~~d~~g~l~~~~-~~~~i------------------~~~~~~g~~~~~~~------------~~~~~~~~i~~~~   59 (243)
                      .-.++++.+||.++++. .++.|                  ..+.|+|....+..            ...... +++++|
T Consensus        17 ~v~sv~~SpDG~~iASas~D~TV~d~~~~~~l~gh~~~v~~V~FsPdg~~~~~~~~~~~~~~~~~~~~~~~V~-~vawSP   95 (588)
T 2j04_A           17 WKNNLTWARDGTLYLTTFPDISIGQPKYAKDINCNSKNLFHVKEFPLEFENKLDFELAQQNGLLNSQPVCYPR-VCKPSP   95 (588)
T ss_dssp             SSCCEEECTTSCEEEECSSSEEEEEECCCSCCSSBGGGTEEEEEECCCCCCTTTTSCCCSSCSSTTSCSCCEE-EEEECS
T ss_pred             cEEEEEECCCCCEEEEEcCCceeecccccceecCCCccEEEEEECCCCCcceEEEEeCCCceEeecCCCCcEE-EEEECC
Confidence            35579999999999876 44444                  22234442211110            011234 789999


Q ss_pred             CCCEEEEEeCCCcEEEEecCC-cEEEEeccCCCcccCCccEEEcCCCcEEEEeCCCCCCcccccccccccCCCceEEEEe
Q 026118           60 ENNVIIVCDSQQGLLKVSEEG-VTVLVSQFNGSQLRFANDVIEASDGSLYFTVSSTKFTPAEYYLDLVSGEPHGVLLKYD  138 (243)
Q Consensus        60 ~g~l~~v~~~~~gl~~~~~~g-~~~~~~~~~~~~~~~~~~l~~d~~G~l~v~~~~~~~~~~~~~~~~~~~~~~g~v~~~~  138 (243)
                      +|.++.++...+.+..++..+ ...+. .........+.+++++|||++.++.+                 ..+.|-.++
T Consensus        96 dG~~LAs~s~dg~V~iwd~~~~l~~l~-~~~~~~~~sv~svafSPDG~~LAsgs-----------------~DGtVkIWd  157 (588)
T 2j04_A           96 IDDWMAVLSNNGNVSVFKDNKMLTNLD-SKGNLSSRTYHCFEWNPIESSIVVGN-----------------EDGELQFFS  157 (588)
T ss_dssp             SSSCEEEEETTSCEEEEETTEEEEECC-CSSCSTTTCEEEEEECSSSSCEEEEE-----------------TTSEEEEEE
T ss_pred             CCCEEEEEeCCCcEEEEeCCceeeecc-CCCccccccEEEEEEcCCCCEEEEEc-----------------CCCEEEEEE
Confidence            999756666555566776444 22211 11111123477899999998665532                 235777778


Q ss_pred             CCCCee--------EEee----ccccccceEEEcCCCCEEEEEEcCCCeEEEEEeecCCCcc-eEEeccCCCCCCCceEE
Q 026118          139 PSTNQT--------SLVL----DGLYFANGVALSEDERFLVVCESWKFRCVKHFLKVSGRTD-REIFIDNLPGGPDNVNL  205 (243)
Q Consensus       139 ~~~~~~--------~~~~----~~~~~~~gi~~~~dg~~l~v~~~~~~~i~~~~~~~~~~~~-~~~~~~~~~~~~~~i~~  205 (243)
                      ..++.+        ..+.    ........++|+|||  +. +...++.|..++.++..... .+.+..........+++
T Consensus       158 ~~~~~l~~~~~i~l~ti~~~~~gh~~~V~sVawSPdg--La-ass~D~tVrlWd~~~~~~~~~~~tL~~~h~~~V~svaF  234 (588)
T 2j04_A          158 IRKNSENTPEFYFESSIRLSDAGSKDWVTHIVWYEDV--LV-AALSNNSVFSMTVSASSHQPVSRMIQNASRRKITDLKI  234 (588)
T ss_dssp             CCCCTTTCCCCEEEEEEECSCTTCCCCEEEEEEETTE--EE-EEETTCCEEEECCCSSSSCCCEEEEECCCSSCCCCEEE
T ss_pred             CCCCccccccceeeeeeecccccccccEEEEEEcCCc--EE-EEeCCCeEEEEECCCCccccceeeecccccCcEEEEEE
Confidence            776642        3331    112467789999998  43 44567899999987654321 12221111234556666


Q ss_pred             CCCCCEEEEE
Q 026118          206 ARDGSFWISI  215 (243)
Q Consensus       206 d~~G~lwv~~  215 (243)
                      .  |+..++.
T Consensus       235 s--g~~LASa  242 (588)
T 2j04_A          235 V--DYKVVLT  242 (588)
T ss_dssp             E--TTEEEEE
T ss_pred             E--CCEEEEE
Confidence            5  3444444

>4a11_B DNA excision repair protein ERCC-8; DNA binding protein, DNA damage repair; HET: DNA; 3.31A {Homo sapiens}

Probab=98.28  E-value=0.00028  Score=57.63  Aligned_cols=151  Identities=11%  Similarity=0.035  Sum_probs=90.2

Q ss_pred             CcccEEEcC-CCc-EEEEeCCCcEEEEcc-CCcee-Eec------------ccCCccccceEEcc-CCCEEEEEeCCCcE
Q 026118           11 HPEDVSVDG-NGV-LYTATGDGWIKRMHP-NGTWE-DWH------------QVGSQSLLGLTTTK-ENNVIIVCDSQQGL   73 (243)
Q Consensus        11 ~p~~i~~d~-~g~-l~~~~~~~~i~~~~~-~g~~~-~~~------------~~~~~~~~~i~~~~-~g~l~~v~~~~~gl   73 (243)
                      .-.++++.+ +|. |.++..++.|..++. ++... .+.            .....+...+++.+ ++++++.+...+.+
T Consensus        45 ~v~~~~~s~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d~~i  124 (408)
T 4a11_B           45 GINTLDIEPVEGRYMLSGGSDGVIVLYDLENSSRQSYYTCKAVCSIGRDHPDVHRYSVETVQWYPHDTGMFTSSSFDKTL  124 (408)
T ss_dssp             CEEEEEECTTTCCEEEEEETTSCEEEEECCCCSSSSCEEECEEEEECTTCTTCCSSCEEEEEECTTCTTCEEEEETTSEE
T ss_pred             cEEEEEEecCCCCEEEEEcCCCeEEEEECCCCcccceEeccccccccccccccCCCcEEEEEEccCCCcEEEEEeCCCeE
Confidence            456788998 886 445668888999983 33211 110            00122233788988 66664666655557


Q ss_pred             EEEe-cCC-cEEEEeccCCCcccCCccEEEcC---CCcEEEEeCCCCCCcccccccccccCCCceEEEEeCCCCeeEEee
Q 026118           74 LKVS-EEG-VTVLVSQFNGSQLRFANDVIEAS---DGSLYFTVSSTKFTPAEYYLDLVSGEPHGVLLKYDPSTNQTSLVL  148 (243)
Q Consensus        74 ~~~~-~~g-~~~~~~~~~~~~~~~~~~l~~d~---~G~l~v~~~~~~~~~~~~~~~~~~~~~~g~v~~~~~~~~~~~~~~  148 (243)
                      ..++ .++ ...... .    ...+..+.+.+   ++.++++..                 ..+.|..+|..+++.....
T Consensus       125 ~iwd~~~~~~~~~~~-~----~~~~~~~~~~~~~~~~~~~~~~~-----------------~~~~v~~~d~~~~~~~~~~  182 (408)
T 4a11_B          125 KVWDTNTLQTADVFN-F----EETVYSHHMSPVSTKHCLVAVGT-----------------RGPKVQLCDLKSGSCSHIL  182 (408)
T ss_dssp             EEEETTTTEEEEEEE-C----SSCEEEEEECSSCSSCCEEEEEE-----------------SSSSEEEEESSSSCCCEEE
T ss_pred             EEeeCCCCccceecc-C----CCceeeeEeecCCCCCcEEEEEc-----------------CCCeEEEEeCCCcceeeee
Confidence            7777 555 222221 1    12344556665   344555421                 2357888888766544333


Q ss_pred             c-cccccceEEEcCCCCEEEEEEcCCCeEEEEEeec
Q 026118          149 D-GLYFANGVALSEDERFLVVCESWKFRCVKHFLKV  183 (243)
Q Consensus       149 ~-~~~~~~gi~~~~dg~~l~v~~~~~~~i~~~~~~~  183 (243)
                      . .......++++|++++++++...++.|..|+...
T Consensus       183 ~~~~~~v~~~~~~~~~~~ll~~~~~dg~i~i~d~~~  218 (408)
T 4a11_B          183 QGHRQEILAVSWSPRYDYILATASADSRVKLWDVRR  218 (408)
T ss_dssp             CCCCSCEEEEEECSSCTTEEEEEETTSCEEEEETTC
T ss_pred             cCCCCcEEEEEECCCCCcEEEEEcCCCcEEEEECCC
Confidence            2 3345678999999997666656778899999864

>1yfq_A Cell cycle arrest protein BUB3; WD repeat WD40 repeat beta transducin repeat all beta, signaling protein; 1.10A {Saccharomyces cerevisiae} SCOP: b.69.4.2 PDB: 1u4c_A 2i3s_A 2i3t_A

Probab=98.28  E-value=7.9e-05  Score=59.57  Aligned_cols=183  Identities=13%  Similarity=-0.007  Sum_probs=106.4

Q ss_pred             CCcccEEEcCCCc-EEEEeCCCcEEEEc-cCCc----eeEecccCCccccceEEccCCC-EEEEEeCCCcEEEEec-CC-
Q 026118           10 NHPEDVSVDGNGV-LYTATGDGWIKRMH-PNGT----WEDWHQVGSQSLLGLTTTKENN-VIIVCDSQQGLLKVSE-EG-   80 (243)
Q Consensus        10 ~~p~~i~~d~~g~-l~~~~~~~~i~~~~-~~g~----~~~~~~~~~~~~~~i~~~~~g~-l~~v~~~~~gl~~~~~-~g-   80 (243)
                      ....++++.+++. |+++..++.|..++ ..+.    ............ .++++++++ +++++...+.|..++. .. 
T Consensus        12 ~~v~~~~~s~~~~~l~~~~~d~~v~iw~~~~~~~~~~~~~~~~~~~~v~-~~~~~~~~~~~l~~~~~dg~i~~wd~~~~~   90 (342)
T 1yfq_A           12 DYISDIKIIPSKSLLLITSWDGSLTVYKFDIQAKNVDLLQSLRYKHPLL-CCNFIDNTDLQIYVGTVQGEILKVDLIGSP   90 (342)
T ss_dssp             SCEEEEEEEGGGTEEEEEETTSEEEEEEEETTTTEEEEEEEEECSSCEE-EEEEEESSSEEEEEEETTSCEEEECSSSSS
T ss_pred             CcEEEEEEcCCCCEEEEEcCCCeEEEEEeCCCCccccceeeeecCCceE-EEEECCCCCcEEEEEcCCCeEEEEEeccCC
Confidence            3566788998886 55666888898888 3443    333222223334 889999999 7577776566777774 44 


Q ss_pred             cEEEEeccCCCcccCCccEEEcCCCcEEEEeCCCCCCcccccccccccCCCceEEEEeCCC---------CeeEEeeccc
Q 026118           81 VTVLVSQFNGSQLRFANDVIEASDGSLYFTVSSTKFTPAEYYLDLVSGEPHGVLLKYDPST---------NQTSLVLDGL  151 (243)
Q Consensus        81 ~~~~~~~~~~~~~~~~~~l~~d~~G~l~v~~~~~~~~~~~~~~~~~~~~~~g~v~~~~~~~---------~~~~~~~~~~  151 (243)
                      ......  .......+.++++.+ ++++++.+                 ..+.|..+|..+         ++........
T Consensus        91 ~~~~~~--~~~~~~~v~~l~~~~-~~~l~s~~-----------------~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~  150 (342)
T 1yfq_A           91 SFQALT--NNEANLGICRICKYG-DDKLIAAS-----------------WDGLIEVIDPRNYGDGVIAVKNLNSNNTKVK  150 (342)
T ss_dssp             SEEECB--SCCCCSCEEEEEEET-TTEEEEEE-----------------TTSEEEEECHHHHTTBCEEEEESCSSSSSSC
T ss_pred             ceEecc--ccCCCCceEEEEeCC-CCEEEEEc-----------------CCCeEEEEcccccccccccccCCeeeEEeeC
Confidence            221111  100123567888888 77666532                 235677777653         2221112223


Q ss_pred             cccceEEEcCCCCEEEEEEcCCCeEEEEEeec-CCCcceEEeccCCCCCCCceEECC-CCCEEEEEec
Q 026118          152 YFANGVALSEDERFLVVCESWKFRCVKHFLKV-SGRTDREIFIDNLPGGPDNVNLAR-DGSFWISIIK  217 (243)
Q Consensus       152 ~~~~gi~~~~dg~~l~v~~~~~~~i~~~~~~~-~~~~~~~~~~~~~~~~~~~i~~d~-~G~lwv~~~~  217 (243)
                      ..+..+++++++  ++++ ..++.|..|+... ......... ......+..+++.+ +|++++....
T Consensus       151 ~~v~~~~~~~~~--l~~~-~~d~~i~i~d~~~~~~~~~~~~~-~~~~~~i~~i~~~~~~~~~l~~~~~  214 (342)
T 1yfq_A          151 NKIFTMDTNSSR--LIVG-MNNSQVQWFRLPLCEDDNGTIEE-SGLKYQIRDVALLPKEQEGYACSSI  214 (342)
T ss_dssp             CCEEEEEECSSE--EEEE-ESTTEEEEEESSCCTTCCCEEEE-CSCSSCEEEEEECSGGGCEEEEEET
T ss_pred             CceEEEEecCCc--EEEE-eCCCeEEEEECCccccccceeee-cCCCCceeEEEECCCCCCEEEEEec
Confidence            456788998876  5555 4568899999875 322111111 12233456688888 8875554443

>2hes_X YDR267CP; beta-propeller, WD40 repeat, biosynthetic protein; 1.70A {Saccharomyces cerevisiae}

Probab=98.28  E-value=0.00057  Score=54.82  Aligned_cols=151  Identities=12%  Similarity=0.054  Sum_probs=86.4

Q ss_pred             cccEEEcCCCcEEEEeCCCcEEEEcc-CCc--ee-Eeccc-CCccccceEEccCCCEEEEEeCCCcEEEEe-cCC-----
Q 026118           12 PEDVSVDGNGVLYTATGDGWIKRMHP-NGT--WE-DWHQV-GSQSLLGLTTTKENNVIIVCDSQQGLLKVS-EEG-----   80 (243)
Q Consensus        12 p~~i~~d~~g~l~~~~~~~~i~~~~~-~g~--~~-~~~~~-~~~~~~~i~~~~~g~l~~v~~~~~gl~~~~-~~g-----   80 (243)
                      -.+++++++ .|..+..++.|..++. .+.  .. .+... ...+..++++++++++|..+..++-+..++ ...     
T Consensus        17 v~~~~~s~~-~las~~~D~~i~lw~~~~~~~~~~~~~~~~~h~~~v~~v~~sp~~~~las~s~D~~v~iw~~~~~~~~~~   95 (330)
T 2hes_X           17 IWSFDFSQG-ILATGSTDRKIKLVSVKYDDFTLIDVLDETAHKKAIRSVAWRPHTSLLAAGSFDSTVSIWAKEESADRTF   95 (330)
T ss_dssp             EEEEEEETT-EEEEEESSSCEEEEECSSSCCEEEEEECTTCCCSCEEEEEECTTSSEEEEEETTSCEEEEEC-------C
T ss_pred             eeeeccCCC-EEEEEcCCCEEEEEEecCCCeEEEEEEecCCccCCEEEEEECCCCCEEEEEeCCCcEEEEEcccCcCccc
Confidence            345777776 5566668888998883 332  22 12111 122333899999999856666555566666 321     


Q ss_pred             -cEEEEeccCCCcccCCccEEEcCCCcEEEEeCCCCCCcccccccccccCCCceEEEEeCCC-C---eeE-Eeecccccc
Q 026118           81 -VTVLVSQFNGSQLRFANDVIEASDGSLYFTVSSTKFTPAEYYLDLVSGEPHGVLLKYDPST-N---QTS-LVLDGLYFA  154 (243)
Q Consensus        81 -~~~~~~~~~~~~~~~~~~l~~d~~G~l~v~~~~~~~~~~~~~~~~~~~~~~g~v~~~~~~~-~---~~~-~~~~~~~~~  154 (243)
                       ...+. ...+ ....+.+++++|+|+++++.+.                 .+.|..+|... +   +.. .+.......
T Consensus        96 ~~~~~~-~~~~-h~~~V~~v~~sp~g~~las~s~-----------------D~~v~iwd~~~~~~~~~~~~~~~~h~~~v  156 (330)
T 2hes_X           96 EMDLLA-IIEG-HENEVKGVAWSNDGYYLATCSR-----------------DKSVWIWETDESGEEYECISVLQEHSQDV  156 (330)
T ss_dssp             CCEEEE-EEC-----CEEEEEECTTSCEEEEEET-----------------TSCEEEEECCTTCCCCEEEEEECCCSSCE
T ss_pred             cceeEE-EEcC-CCCcEEEEEECCCCCEEEEEeC-----------------CCEEEEEeccCCCCCeEEEEEeccCCCce
Confidence             11111 1111 1235678999999987776322                 34566666632 2   222 222233456


Q ss_pred             ceEEEcCCCCEEEEEEcCCCeEEEEEeec
Q 026118          155 NGVALSEDERFLVVCESWKFRCVKHFLKV  183 (243)
Q Consensus       155 ~gi~~~~dg~~l~v~~~~~~~i~~~~~~~  183 (243)
                      ..++|+|+++.|. +...++.|..++...
T Consensus       157 ~~v~~~p~~~~l~-s~s~D~~i~iW~~~~  184 (330)
T 2hes_X          157 KHVIWHPSEALLA-SSSYDDTVRIWKDYD  184 (330)
T ss_dssp             EEEEECSSSSEEE-EEETTSCEEEEEEET
T ss_pred             EEEEECCCCCEEE-EEcCCCeEEEEECCC
Confidence            7899999999544 445678888888754

>2oaj_A Protein SNI1; WD40 repeat, beta propeller, endocytosis/exocytosis complex; 2.40A {Saccharomyces cerevisiae}

Probab=98.28  E-value=0.00016  Score=66.29  Aligned_cols=182  Identities=12%  Similarity=0.001  Sum_probs=108.4

Q ss_pred             CCcccEEEcCCCcEE-EEeCCCcEEEEccCCceeEecccCCccccceEEccCCCEEEEEeCCCcEEEEe-cCC--cEEEE
Q 026118           10 NHPEDVSVDGNGVLY-TATGDGWIKRMHPNGTWEDWHQVGSQSLLGLTTTKENNVIIVCDSQQGLLKVS-EEG--VTVLV   85 (243)
Q Consensus        10 ~~p~~i~~d~~g~l~-~~~~~~~i~~~~~~g~~~~~~~~~~~~~~~i~~~~~g~l~~v~~~~~gl~~~~-~~g--~~~~~   85 (243)
                      ....+++++++|.+. ++..++.|+.++..+...........+...++|++ |++|..+..++.|..++ .++  ...+.
T Consensus        18 ~~V~~lafspdg~~lAsgs~Dg~I~lw~~~~~~~~~~~~~~~~V~~l~fsp-g~~L~S~s~D~~v~lWd~~~~~~~~~~~   96 (902)
T 2oaj_A           18 SKPIAAAFDFTQNLLAIATVTGEVHIYGQQQVEVVIKLEDRSAIKEMRFVK-GIYLVVINAKDTVYVLSLYSQKVLTTVF   96 (902)
T ss_dssp             SCEEEEEEETTTTEEEEEETTSEEEEECSTTCEEEEECSSCCCEEEEEEET-TTEEEEEETTCEEEEEETTTCSEEEEEE
T ss_pred             CCcEEEEECCCCCEEEEEeCCCEEEEEeCCCcEEEEEcCCCCCEEEEEEcC-CCEEEEEECcCeEEEEECCCCcEEEEEc
Confidence            346789999999655 56688999999844332222221223333899999 78646666555677777 555  22222


Q ss_pred             eccCCCcccCCccEEEcCCCcEEEEeCCCCCCcccccccccccCCCceEEEEeCCCCeeEEee------------ccccc
Q 026118           86 SQFNGSQLRFANDVIEASDGSLYFTVSSTKFTPAEYYLDLVSGEPHGVLLKYDPSTNQTSLVL------------DGLYF  153 (243)
Q Consensus        86 ~~~~~~~~~~~~~l~~d~~G~l~v~~~~~~~~~~~~~~~~~~~~~~g~v~~~~~~~~~~~~~~------------~~~~~  153 (243)
                          .  ...+.+++++|+|++.++.+                 ..+.|..+|.++++...+.            .....
T Consensus        97 ----~--~~~V~~v~~sp~g~~l~sgs-----------------~dg~V~lwd~~~~~~~~~~i~~~~~~~~~~~~h~~~  153 (902)
T 2oaj_A           97 ----V--PGKITSIDTDASLDWMLIGL-----------------QNGSMIVYDIDRDQLSSFKLDNLQKSSFFPAARLSP  153 (902)
T ss_dssp             ----C--SSCEEEEECCTTCSEEEEEE-----------------TTSCEEEEETTTTEEEEEEECCHHHHHTCSSSCCCC
T ss_pred             ----C--CCCEEEEEECCCCCEEEEEc-----------------CCCcEEEEECCCCccccceeccccccccccccCCCC
Confidence                1  13467889999998666522                 2457888888877653221            11234


Q ss_pred             cceEEEcCCCCEEEEEEcCCCeEEEEEeecCCCcceEEeccC-----------------CCCCCCceEECCCCCEEEEEe
Q 026118          154 ANGVALSEDERFLVVCESWKFRCVKHFLKVSGRTDREIFIDN-----------------LPGGPDNVNLARDGSFWISII  216 (243)
Q Consensus       154 ~~gi~~~~dg~~l~v~~~~~~~i~~~~~~~~~~~~~~~~~~~-----------------~~~~~~~i~~d~~G~lwv~~~  216 (243)
                      ...++|+|++..++++...++.| .+|.....  ....+...                 .......+++.++|++.++..
T Consensus       154 V~sl~~sp~~~~~l~~g~~dg~v-lWd~~~~~--~~~~~~~~~~~g~~~~~~~~~~~~~h~~~V~~v~fspdg~~lasgs  230 (902)
T 2oaj_A          154 IVSIQWNPRDIGTVLISYEYVTL-TYSLVENE--IKQSFIYELPPFAPGGDFSEKTNEKRTPKVIQSLYHPNSLHIITIH  230 (902)
T ss_dssp             CCEEEEETTEEEEEEEECSSCEE-EEETTTTE--EEEEECCCBCTTCCCSTTCCCTTSCBCCCEEEEEECTTSSEEEEEE
T ss_pred             eEEEEEccCCCCEEEEEeCCCcE-EEECCCCc--eEEEEecccCCcCCCcccccccccccCCCeEEEEEcCCCCEEEEEE
Confidence            57899999643344444667888 99876431  11122100                 012345688888888666554


Q ss_pred             cC
Q 026118          217 KM  218 (243)
Q Consensus       217 ~~  218 (243)
                      ..
T Consensus       231 ~D  232 (902)
T 2oaj_A          231 ED  232 (902)
T ss_dssp             TT
T ss_pred             CC
Confidence            43

>2ynn_A Coatomer subunit beta'; protein transport, peptide binding protein, membrane traffic COPI-mediated trafficking, dilysine motifs; 1.78A {Saccharomyces cerevisiae} PDB: 2yno_A

Probab=98.28  E-value=0.00048  Score=54.56  Aligned_cols=181  Identities=10%  Similarity=0.017  Sum_probs=101.8

Q ss_pred             ccEEEcCCCc-EEEEeCCCcEEEEc-cCCce-eEecccCCccccceEEccCCCEEEEEeCCCcEEEEe-cCCcEEEEecc
Q 026118           13 EDVSVDGNGV-LYTATGDGWIKRMH-PNGTW-EDWHQVGSQSLLGLTTTKENNVIIVCDSQQGLLKVS-EEGVTVLVSQF   88 (243)
Q Consensus        13 ~~i~~d~~g~-l~~~~~~~~i~~~~-~~g~~-~~~~~~~~~~~~~i~~~~~g~l~~v~~~~~gl~~~~-~~g~~~~~~~~   88 (243)
                      .++++.+++. |..+..++.|..++ .+++. ..+........ +++++++++++..+..++.+..++ .++...... .
T Consensus        59 ~~~~~~~~~~~l~s~s~d~~i~vwd~~~~~~~~~~~~h~~~v~-~~~~~~~~~~l~sgs~D~~v~lWd~~~~~~~~~~-~  136 (304)
T 2ynn_A           59 RAGKFIARKNWIIVGSDDFRIRVFNYNTGEKVVDFEAHPDYIR-SIAVHPTKPYVLSGSDDLTVKLWNWENNWALEQT-F  136 (304)
T ss_dssp             EEEEEEGGGTEEEEEETTSEEEEEETTTCCEEEEEECCSSCEE-EEEECSSSSEEEEEETTSCEEEEEGGGTTEEEEE-E
T ss_pred             EEEEEeCCCCEEEEECCCCEEEEEECCCCcEEEEEeCCCCcEE-EEEEcCCCCEEEEECCCCeEEEEECCCCcchhhh-h
Confidence            4567777775 55566888999998 44543 33322223334 899999999856666555677777 555221111 1


Q ss_pred             CCCcccCCccEEEcC-CCcEEEEeCCCCCCcccccccccccCCCceEEEEeCCCCeeEE-eecc-ccccceEEEcC--CC
Q 026118           89 NGSQLRFANDVIEAS-DGSLYFTVSSTKFTPAEYYLDLVSGEPHGVLLKYDPSTNQTSL-VLDG-LYFANGVALSE--DE  163 (243)
Q Consensus        89 ~~~~~~~~~~l~~d~-~G~l~v~~~~~~~~~~~~~~~~~~~~~~g~v~~~~~~~~~~~~-~~~~-~~~~~gi~~~~--dg  163 (243)
                      .+ ....+.+++++| ++.++++.+                 ..+.|..+|..++.... +... ......+.+++  ++
T Consensus       137 ~~-h~~~v~~v~~~p~~~~~l~sgs-----------------~D~~v~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~  198 (304)
T 2ynn_A          137 EG-HEHFVMCVAFNPKDPSTFASGC-----------------LDRTVKVWSLGQSTPNFTLTTGQERGVNYVDYYPLPDK  198 (304)
T ss_dssp             CC-CCSCEEEEEECTTCTTEEEEEE-----------------TTSEEEEEETTCSSCSEEEECCCTTCEEEEEECCSTTC
T ss_pred             cc-cCCcEEEEEECCCCCCEEEEEe-----------------CCCeEEEEECCCCCccceeccCCcCcEEEEEEEEcCCC
Confidence            11 123567889998 567666532                 23567777775443222 2221 12334566665  67


Q ss_pred             CEEEEEEcCCCeEEEEEeecCCCcceEEeccCCCCCCCceEECCCCCEEEEEec
Q 026118          164 RFLVVCESWKFRCVKHFLKVSGRTDREIFIDNLPGGPDNVNLARDGSFWISIIK  217 (243)
Q Consensus       164 ~~l~v~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~i~~d~~G~lwv~~~~  217 (243)
                      ++|. +...++.|..+|.....  ....+. .-......+++.+++.+.++...
T Consensus       199 ~~l~-s~s~D~~i~iWd~~~~~--~~~~~~-~h~~~v~~~~~~p~~~~l~s~s~  248 (304)
T 2ynn_A          199 PYMI-TASDDLTIKIWDYQTKS--CVATLE-GHMSNVSFAVFHPTLPIIISGSE  248 (304)
T ss_dssp             CEEE-EEETTSEEEEEETTTTE--EEEEEE-CCSSCEEEEEECSSSSEEEEEET
T ss_pred             CEEE-EEcCCCeEEEEeCCCCc--cceeeC-CCCCCEEEEEECCCCCEEEEEcC
Confidence            7444 44567899999876431  112221 11223345677777775554443

>2pm9_A Protein WEB1, protein transport protein SEC31; beta propeller; 3.30A {Saccharomyces cerevisiae}

Probab=98.27  E-value=0.00015  Score=59.67  Aligned_cols=187  Identities=10%  Similarity=-0.028  Sum_probs=105.5

Q ss_pred             CcccEEEcCC-Cc-EEEEeCCCcEEEEcc-CCc-------eeEe---cccCCccccceEEccC-CCEEEEEeCCCcEEEE
Q 026118           11 HPEDVSVDGN-GV-LYTATGDGWIKRMHP-NGT-------WEDW---HQVGSQSLLGLTTTKE-NNVIIVCDSQQGLLKV   76 (243)
Q Consensus        11 ~p~~i~~d~~-g~-l~~~~~~~~i~~~~~-~g~-------~~~~---~~~~~~~~~~i~~~~~-g~l~~v~~~~~gl~~~   76 (243)
                      ...++++.++ +. |+.+..++.|..++. .++       ....   ........ +++++++ +++++++...+.|..+
T Consensus       115 ~v~~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~-~~~~~~~~~~~l~~~~~dg~v~iw  193 (416)
T 2pm9_A          115 SVKTVKFNAKQDNVLASGGNNGEIFIWDMNKCTESPSNYTPLTPGQSMSSVDEVI-SLAWNQSLAHVFASAGSSNFASIW  193 (416)
T ss_dssp             CCCEEEECSSSTTBEEEECSSSCEEBCBTTTTSSCTTTCCCBCCCCSCCSSCCCC-EEEECSSCTTEEEEESSSSCEEEE
T ss_pred             ceEEEEEcCCCCCEEEEEcCCCeEEEEECCCCccccccccccccccccCCCCCee-EEEeCCCCCcEEEEEcCCCCEEEE
Confidence            4567888886 55 556668889999983 332       1111   11112234 8899998 6774555544557888


Q ss_pred             e-cCC-cEEEEeccC-CC-cccCCccEEEcCCC-cEEEEeCCCCCCcccccccccccCCCceEEEEeCCCC-eeEE-ee-
Q 026118           77 S-EEG-VTVLVSQFN-GS-QLRFANDVIEASDG-SLYFTVSSTKFTPAEYYLDLVSGEPHGVLLKYDPSTN-QTSL-VL-  148 (243)
Q Consensus        77 ~-~~g-~~~~~~~~~-~~-~~~~~~~l~~d~~G-~l~v~~~~~~~~~~~~~~~~~~~~~~g~v~~~~~~~~-~~~~-~~-  148 (243)
                      + .++ ......... .. ....+.+++++|+| .++++....              ...+.|..+|..++ .... +. 
T Consensus       194 d~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d--------------~~~~~i~~~d~~~~~~~~~~~~~  259 (416)
T 2pm9_A          194 DLKAKKEVIHLSYTSPNSGIKQQLSVVEWHPKNSTRVATATGS--------------DNDPSILIWDLRNANTPLQTLNQ  259 (416)
T ss_dssp             ETTTTEEEEEECCCCCSSCCCCCEEEEEECSSCTTEEEEEECC--------------SSSCCCCEEETTSTTSCSBCCCS
T ss_pred             ECCCCCcceEEeccccccccCCceEEEEECCCCCCEEEEEECC--------------CCCceEEEEeCCCCCCCcEEeec
Confidence            8 555 222211110 00 02456788999987 455553220              01126777777654 2222 22 


Q ss_pred             ccccccceEEEcC-CCCEEEEEEcCCCeEEEEEeecCCCcceEEeccCCCCCCCceEECCCC-CEEEEEe
Q 026118          149 DGLYFANGVALSE-DERFLVVCESWKFRCVKHFLKVSGRTDREIFIDNLPGGPDNVNLARDG-SFWISII  216 (243)
Q Consensus       149 ~~~~~~~gi~~~~-dg~~l~v~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~i~~d~~G-~lwv~~~  216 (243)
                      ........++++| ++++|+.+ ..++.|..|+.....  ....+. ........+++.++| +++++..
T Consensus       260 ~~~~~v~~~~~s~~~~~~l~s~-~~dg~v~~wd~~~~~--~~~~~~-~~~~~v~~~~~s~~~~~~l~s~~  325 (416)
T 2pm9_A          260 GHQKGILSLDWCHQDEHLLLSS-GRDNTVLLWNPESAE--QLSQFP-ARGNWCFKTKFAPEAPDLFACAS  325 (416)
T ss_dssp             CCSSCEEEEEECSSCSSCEEEE-ESSSEEEEECSSSCC--EEEEEE-CSSSCCCCEEECTTCTTEEEECC
T ss_pred             CccCceeEEEeCCCCCCeEEEE-eCCCCEEEeeCCCCc--cceeec-CCCCceEEEEECCCCCCEEEEEe
Confidence            2334567899999 88855555 567889999876531  122222 223345678888888 5555443

>2j04_A TAU60, YPL007P, hypothetical protein YPL007C; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae}

Probab=98.26  E-value=0.00015  Score=62.68  Aligned_cols=177  Identities=10%  Similarity=0.029  Sum_probs=105.4

Q ss_pred             CcccEEEcCCCc-EEEEeCCCcEEEEccCCceeEecccCC-----ccccceEEccCCCEEEEEeCCCcEEEEe-cCC-c-
Q 026118           11 HPEDVSVDGNGV-LYTATGDGWIKRMHPNGTWEDWHQVGS-----QSLLGLTTTKENNVIIVCDSQQGLLKVS-EEG-V-   81 (243)
Q Consensus        11 ~p~~i~~d~~g~-l~~~~~~~~i~~~~~~g~~~~~~~~~~-----~~~~~i~~~~~g~l~~v~~~~~gl~~~~-~~g-~-   81 (243)
                      ...++++.|+|. |-+++.++.|..++..+....+. ...     ... +++++|||++|+++..++-|..++ .++ . 
T Consensus        87 ~V~~vawSPdG~~LAs~s~dg~V~iwd~~~~l~~l~-~~~~~~~~sv~-svafSPDG~~LAsgs~DGtVkIWd~~~~~l~  164 (588)
T 2j04_A           87 YPRVCKPSPIDDWMAVLSNNGNVSVFKDNKMLTNLD-SKGNLSSRTYH-CFEWNPIESSIVVGNEDGELQFFSIRKNSEN  164 (588)
T ss_dssp             CEEEEEECSSSSCEEEEETTSCEEEEETTEEEEECC-CSSCSTTTCEE-EEEECSSSSCEEEEETTSEEEEEECCCCTTT
T ss_pred             cEEEEEECCCCCEEEEEeCCCcEEEEeCCceeeecc-CCCccccccEE-EEEEcCCCCEEEEEcCCCEEEEEECCCCccc
Confidence            355688889996 55666888999998444333332 111     134 799999999878887655666777 444 3 


Q ss_pred             -------EEEEeccCCCcccCCccEEEcCCCcEEEEeCCCCCCcccccccccccCCCceEEEEeCCCCeeE----Eee-c
Q 026118           82 -------TVLVSQFNGSQLRFANDVIEASDGSLYFTVSSTKFTPAEYYLDLVSGEPHGVLLKYDPSTNQTS----LVL-D  149 (243)
Q Consensus        82 -------~~~~~~~~~~~~~~~~~l~~d~~G~l~v~~~~~~~~~~~~~~~~~~~~~~g~v~~~~~~~~~~~----~~~-~  149 (243)
                             ..+.....+ ....+.++++.|+| +..+..                  .+.|+.++.+++...    .+. .
T Consensus       165 ~~~~i~l~ti~~~~~g-h~~~V~sVawSPdg-Laass~------------------D~tVrlWd~~~~~~~~~~~tL~~~  224 (588)
T 2j04_A          165 TPEFYFESSIRLSDAG-SKDWVTHIVWYEDV-LVAALS------------------NNSVFSMTVSASSHQPVSRMIQNA  224 (588)
T ss_dssp             CCCCEEEEEEECSCTT-CCCCEEEEEEETTE-EEEEET------------------TCCEEEECCCSSSSCCCEEEEECC
T ss_pred             cccceeeeeeeccccc-ccccEEEEEEcCCc-EEEEeC------------------CCeEEEEECCCCccccceeeeccc
Confidence                   111111122 23567889999999 544422                  346777777755531    232 2


Q ss_pred             cccccceEEEcCCCCEEEEEEcCCCeEEEEEeecCCCcceEEeccCCCCCCCceEE--CCCCCEEEEEe
Q 026118          150 GLYFANGVALSEDERFLVVCESWKFRCVKHFLKVSGRTDREIFIDNLPGGPDNVNL--ARDGSFWISII  216 (243)
Q Consensus       150 ~~~~~~gi~~~~dg~~l~v~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~i~~--d~~G~lwv~~~  216 (243)
                      ......+++|+  |+.|..+ . .+.|..|+..+..   ...+..+-.....++++  .++|...+...
T Consensus       225 h~~~V~svaFs--g~~LASa-~-~~tIkLWd~~~~~---~~~~~~gh~~~V~~va~~~s~d~~~La~a~  286 (588)
T 2j04_A          225 SRRKITDLKIV--DYKVVLT-C-PGYVHKIDLKNYS---ISSLKTGSLENFHIIPLNHEKESTILLMSN  286 (588)
T ss_dssp             CSSCCCCEEEE--TTEEEEE-C-SSEEEEEETTTTE---EEEEECSCCSCCCEEEETTCSSCEEEEECS
T ss_pred             ccCcEEEEEEE--CCEEEEE-e-CCeEEEEECCCCe---EEEEEcCCCceEEEEEeeeCCCCCEEEEEc
Confidence            23457789998  5645555 3 4799999977532   21222122334556777  67765444443

>3s25_A Hypothetical 7-bladed beta-propeller-like protein; structural genomics, joint center F structural genomics, JCSG; 1.88A {Eubacterium rectale}

Probab=98.25  E-value=6.9e-05  Score=59.87  Aligned_cols=137  Identities=9%  Similarity=0.148  Sum_probs=84.9

Q ss_pred             cEEEcCCCcEEEEe--CCCcEEEEccCCceeEecccCCccccceEEccCCCEEEEEeCC--------------CcEEEEe
Q 026118           14 DVSVDGNGVLYTAT--GDGWIKRMHPNGTWEDWHQVGSQSLLGLTTTKENNVIIVCDSQ--------------QGLLKVS   77 (243)
Q Consensus        14 ~i~~d~~g~l~~~~--~~~~i~~~~~~g~~~~~~~~~~~~~~~i~~~~~g~l~~v~~~~--------------~gl~~~~   77 (243)
                      .++. .++.||++.  .+++|++++.+|........ ..+. .|  .++|+.+|.+...              ..|++++
T Consensus        20 ~~~~-~g~~iy~~n~~d~~~ly~~~~dg~~~~~l~~-~~~~-~i--~~~g~~Iyy~~~~~~~~~~~~~~~~n~~~Iy~i~   94 (302)
T 3s25_A           20 LFCE-SDGEVFFSNTNDNGRLYAMNIDGSNIHKLSN-DTAM-YI--NADKNYVYYVRNNNQKITSQTFFSYDRNSLCRIK   94 (302)
T ss_dssp             CEEE-ETTEEEEEEGGGTTEEEEEETTSCSCEEEEE-EEEE-EE--EECSSEEEEEEECC------CCSSCCSEEEEEEE
T ss_pred             EEEE-eCCEEEEEeCCCCceEEEEcCCCCCCEEccC-Ccee-eE--EEcCCEEEEEECCCCcccccceeccCCCeEEEEe
Confidence            3444 456899887  46789999977753332221 1222 33  4566655666532              2578888


Q ss_pred             cCC--cEEEEeccCCCcccCCccEEEcCC-CcEEEEe-CCCCCCcccccccccccCCCceEEEEeCCCCeeEEeeccccc
Q 026118           78 EEG--VTVLVSQFNGSQLRFANDVIEASD-GSLYFTV-SSTKFTPAEYYLDLVSGEPHGVLLKYDPSTNQTSLVLDGLYF  153 (243)
Q Consensus        78 ~~g--~~~~~~~~~~~~~~~~~~l~~d~~-G~l~v~~-~~~~~~~~~~~~~~~~~~~~g~v~~~~~~~~~~~~~~~~~~~  153 (243)
                      .+|  .+.+...        + +..+.++ +.||+++ +.               .....||+++.++...+++..... 
T Consensus        95 ~dg~~~~~l~~~--------~-~~~~s~~g~~Iy~~~~~~---------------~~~~~Iy~~~~dGs~~~~lt~~~~-  149 (302)
T 3s25_A           95 RNGHGSTVLDPD--------P-CIYASLIGNYIYYLHYDT---------------QTATSLYRIRIDGEEKKKIKNHYL-  149 (302)
T ss_dssp             TTSCCCEEEECS--------C-EEEEEEETTEEEEEEESS---------------SSCEEEEEEETTSCCCEEEESSCC-
T ss_pred             CCCCcceEeecC--------C-ccEEEEeCCEEEEEeecC---------------CCCceEEEEECCCCCeEEEeCCCc-
Confidence            444  4444321        1 2244454 4688885 11               123579999999767776654422 


Q ss_pred             cceEEEcCCCCEEEEEEcCCCeEEEEEeec
Q 026118          154 ANGVALSEDERFLVVCESWKFRCVKHFLKV  183 (243)
Q Consensus       154 ~~gi~~~~dg~~l~v~~~~~~~i~~~~~~~  183 (243)
                         ++++++++.||+++....+|++.++++
T Consensus       150 ---~~~~~~g~~iy~t~~g~~~Iy~~~l~g  176 (302)
T 3s25_A          150 ---FTCNTSDRYFYYNNPKNGQLYRYDTAS  176 (302)
T ss_dssp             ---CCSEEETTEEEEECTTTCCEEEEETTT
T ss_pred             ---eEeeEECCEEEEEeCCCceEEEEECCC
Confidence               456788999999987778999998876

>3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A*

Probab=98.25  E-value=0.00032  Score=66.19  Aligned_cols=184  Identities=13%  Similarity=0.071  Sum_probs=110.7

Q ss_pred             CcccEEEcCCCcEE-EEeCCCcEEEEc-cCCce-eEecccCCccccceEEccCCCEEEEEeCCCcEEEEe-cCC-c-EEE
Q 026118           11 HPEDVSVDGNGVLY-TATGDGWIKRMH-PNGTW-EDWHQVGSQSLLGLTTTKENNVIIVCDSQQGLLKVS-EEG-V-TVL   84 (243)
Q Consensus        11 ~p~~i~~d~~g~l~-~~~~~~~i~~~~-~~g~~-~~~~~~~~~~~~~i~~~~~g~l~~v~~~~~gl~~~~-~~g-~-~~~   84 (243)
                      .-.++++.++|.+. ++..++.|..++ .+++. ..+........ +++++++|+++.++..++.|..++ .++ . ..+
T Consensus       617 ~v~~~~~s~~~~~l~s~~~d~~i~vw~~~~~~~~~~~~~h~~~v~-~~~~s~~~~~l~s~~~d~~v~vwd~~~~~~~~~~  695 (1249)
T 3sfz_A          617 AVYHACFSQDGQRIASCGADKTLQVFKAETGEKLLDIKAHEDEVL-CCAFSSDDSYIATCSADKKVKIWDSATGKLVHTY  695 (1249)
T ss_dssp             CEEEEEECTTSSEEEEEETTSCEEEEETTTCCEEEEECCCSSCEE-EEEECTTSSEEEEEETTSEEEEEETTTCCEEEEE
T ss_pred             cEEEEEECCCCCEEEEEeCCCeEEEEECCCCCEEEEeccCCCCEE-EEEEecCCCEEEEEeCCCeEEEEECCCCceEEEE
Confidence            34568889988644 556888999998 44543 33332223334 899999999856666555677888 666 2 222


Q ss_pred             EeccCCCcccCCccEEEcCCC--cEEEEeCCCCCCcccccccccccCCCceEEEEeCCCCeeEEee-ccccccceEEEcC
Q 026118           85 VSQFNGSQLRFANDVIEASDG--SLYFTVSSTKFTPAEYYLDLVSGEPHGVLLKYDPSTNQTSLVL-DGLYFANGVALSE  161 (243)
Q Consensus        85 ~~~~~~~~~~~~~~l~~d~~G--~l~v~~~~~~~~~~~~~~~~~~~~~~g~v~~~~~~~~~~~~~~-~~~~~~~gi~~~~  161 (243)
                      ..     ....+.++++.+++  .+.++.+                 ..+.|..+|..+++..... ........++++|
T Consensus       696 ~~-----~~~~v~~~~~~~~~~~~~l~sg~-----------------~d~~v~vwd~~~~~~~~~~~~h~~~v~~~~~sp  753 (1249)
T 3sfz_A          696 DE-----HSEQVNCCHFTNKSNHLLLATGS-----------------NDFFLKLWDLNQKECRNTMFGHTNSVNHCRFSP  753 (1249)
T ss_dssp             EC-----CSSCEEEEEECSSSSCCEEEEEE-----------------TTSCEEEEETTSSSEEEEECCCSSCEEEEEECS
T ss_pred             cC-----CCCcEEEEEEecCCCceEEEEEe-----------------CCCeEEEEECCCcchhheecCCCCCEEEEEEec
Confidence            21     12346678888853  3554422                 2356888888877655433 3344567899999


Q ss_pred             CCCEEEEEEcCCCeEEEEEeecCCCcceEEec----------cCCCCCCCceEECCCCCEEEEEecC
Q 026118          162 DERFLVVCESWKFRCVKHFLKVSGRTDREIFI----------DNLPGGPDNVNLARDGSFWISIIKM  218 (243)
Q Consensus       162 dg~~l~v~~~~~~~i~~~~~~~~~~~~~~~~~----------~~~~~~~~~i~~d~~G~lwv~~~~~  218 (243)
                      +++.++.+ ..++.|..++.............          .........++++++|+..++...+
T Consensus       754 ~~~~l~s~-s~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~l~~~~~~  819 (1249)
T 3sfz_A          754 DDELLASC-SADGTLRLWDVRSANERKSINVKRFFLSSEDPPEDVEVIVKCCSWSADGDKIIVAAKN  819 (1249)
T ss_dssp             STTEEEEE-ESSSEEEEEEGGGTEEEEEEECCCCC--------CCCCCBCCCCBCTTSSEEEEEETT
T ss_pred             CCCEEEEE-ECCCeEEEEeCCCCcccceecccccccccCCccccccceEEEEEECCCCCEEEEEcCC
Confidence            99955555 56788999987643111100000          0011234567888888866655443

>1k32_A Tricorn protease; protein degradation, substrate gating, serine protease, beta propeller, proteasome, hydrolase; 2.00A {Thermoplasma acidophilum} SCOP: b.36.1.3 b.68.7.1 b.69.9.1 c.14.1.2 PDB: 1n6e_A 1n6d_A 1n6f_A*

Probab=98.24  E-value=9.1e-05  Score=68.97  Aligned_cols=144  Identities=13%  Similarity=0.088  Sum_probs=87.4

Q ss_pred             cEEEcCCC-cEEEEeCCCcEE-EEcc-CCceeEecccCCccccceEEccCCCEEEEEeCCCcEEEEe-cCC-cEEEEecc
Q 026118           14 DVSVDGNG-VLYTATGDGWIK-RMHP-NGTWEDWHQVGSQSLLGLTTTKENNVIIVCDSQQGLLKVS-EEG-VTVLVSQF   88 (243)
Q Consensus        14 ~i~~d~~g-~l~~~~~~~~i~-~~~~-~g~~~~~~~~~~~~~~~i~~~~~g~l~~v~~~~~gl~~~~-~~g-~~~~~~~~   88 (243)
                      ++++. +| .|+++..+..++ .++. .++...+........ .+++++||+.++++.....++.++ .++ ...+....
T Consensus       342 ~~~~s-dg~~l~~~s~~~~l~~~~d~~~~~~~~l~~~~~~~~-~~~~SpDG~~la~~~~~~~v~~~d~~tg~~~~~~~~~  419 (1045)
T 1k32_A          342 RRGGD-TKVAFIHGTREGDFLGIYDYRTGKAEKFEENLGNVF-AMGVDRNGKFAVVANDRFEIMTVDLETGKPTVIERSR  419 (1045)
T ss_dssp             EECSS-SEEEEEEEETTEEEEEEEETTTCCEEECCCCCCSEE-EEEECTTSSEEEEEETTSEEEEEETTTCCEEEEEECS
T ss_pred             eeeEc-CCCeEEEEECCCceEEEEECCCCCceEecCCcccee-eeEECCCCCEEEEECCCCeEEEEECCCCceEEeccCC
Confidence            34555 55 344444456677 7773 444444332123344 789999999866666656788898 666 44443211


Q ss_pred             CCCcccCCccEEEcCCCcEEEEeCCCC-CCcccccccccccCCCceEEEEeCCCCeeEEeeccccccceEEEcCCCCEEE
Q 026118           89 NGSQLRFANDVIEASDGSLYFTVSSTK-FTPAEYYLDLVSGEPHGVLLKYDPSTNQTSLVLDGLYFANGVALSEDERFLV  167 (243)
Q Consensus        89 ~~~~~~~~~~l~~d~~G~l~v~~~~~~-~~~~~~~~~~~~~~~~g~v~~~~~~~~~~~~~~~~~~~~~gi~~~~dg~~l~  167 (243)
                          ...+.+++++|||+..+...... +        .........|+.+|.++++...+.........++|++||++||
T Consensus       420 ----~~~v~~~~~SpDG~~la~~~~~~~~--------~~~~~~~~~i~l~d~~~g~~~~l~~~~~~~~~~~~spdG~~l~  487 (1045)
T 1k32_A          420 ----EAMITDFTISDNSRFIAYGFPLKHG--------ETDGYVMQAIHVYDMEGRKIFAATTENSHDYAPAFDADSKNLY  487 (1045)
T ss_dssp             ----SSCCCCEEECTTSCEEEEEEEECSS--------TTCSCCEEEEEEEETTTTEEEECSCSSSBEEEEEECTTSCEEE
T ss_pred             ----CCCccceEECCCCCeEEEEecCccc--------cccCCCCCeEEEEECCCCcEEEeeCCCcccCCceEcCCCCEEE
Confidence                12346789999998554321100 0        0000123479999999888666555555567799999999998


Q ss_pred             EEEc
Q 026118          168 VCES  171 (243)
Q Consensus       168 v~~~  171 (243)
                      +...
T Consensus       488 ~~s~  491 (1045)
T 1k32_A          488 YLSY  491 (1045)
T ss_dssp             EEES
T ss_pred             EEec
Confidence            8754

>3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A*

Probab=98.24  E-value=6.8e-05  Score=70.78  Aligned_cols=180  Identities=10%  Similarity=0.001  Sum_probs=111.2

Q ss_pred             CcccEEEcCCCc-EEEEeCCCcEEEEc-cCCceeEecccCCccccceEEccCCCEEEEEeCCCcEEEEe-cCC--cEEEE
Q 026118           11 HPEDVSVDGNGV-LYTATGDGWIKRMH-PNGTWEDWHQVGSQSLLGLTTTKENNVIIVCDSQQGLLKVS-EEG--VTVLV   85 (243)
Q Consensus        11 ~p~~i~~d~~g~-l~~~~~~~~i~~~~-~~g~~~~~~~~~~~~~~~i~~~~~g~l~~v~~~~~gl~~~~-~~g--~~~~~   85 (243)
                      ...++++.++|. |..+..++.|..++ ..++............ .+.+.+++.+ +++...+.+..++ .++  ...+.
T Consensus      1005 ~v~~l~~s~dg~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~v~-~~~~~~~~~l-~~~~~dg~v~vwd~~~~~~~~~~~ 1082 (1249)
T 3sfz_A         1005 AVRHIQFTADGKTLISSSEDSVIQVWNWQTGDYVFLQAHQETVK-DFRLLQDSRL-LSWSFDGTVKVWNVITGRIERDFT 1082 (1249)
T ss_dssp             CCCCEEECSSSSCEEEECSSSBEEEEETTTTEEECCBCCSSCEE-EEEECSSSEE-EEEESSSEEEEEETTTTCCCEEEE
T ss_pred             ceEEEEECCCCCEEEEEcCCCEEEEEECCCCceEEEecCCCcEE-EEEEcCCCcE-EEEECCCcEEEEECCCCceeEEEc
Confidence            456789999886 55566888999998 4554443322223334 7888898877 7777666688888 666  33332


Q ss_pred             eccCCCcccCCccEEEcCCCcEEEEeCCCCCCcccccccccccCCCceEEEEeCCCCeeEEeec-cccccceEEEcCCCC
Q 026118           86 SQFNGSQLRFANDVIEASDGSLYFTVSSTKFTPAEYYLDLVSGEPHGVLLKYDPSTNQTSLVLD-GLYFANGVALSEDER  164 (243)
Q Consensus        86 ~~~~~~~~~~~~~l~~d~~G~l~v~~~~~~~~~~~~~~~~~~~~~~g~v~~~~~~~~~~~~~~~-~~~~~~gi~~~~dg~  164 (243)
                      ..     ...+.+++++++|+++++.+.                 .+.|..++..+++...... .......++|+++|+
T Consensus      1083 ~~-----~~~v~~~~~s~d~~~l~s~s~-----------------d~~v~iwd~~~~~~~~~l~~h~~~v~~~~~s~dg~ 1140 (1249)
T 3sfz_A         1083 CH-----QGTVLSCAISSDATKFSSTSA-----------------DKTAKIWSFDLLSPLHELKGHNGCVRCSAFSLDGI 1140 (1249)
T ss_dssp             CC-----SSCCCCEEECSSSSSCEEECC-----------------SSCCCEECSSSSSCSBCCCCCSSCEEEEEECSSSS
T ss_pred             cc-----CCcEEEEEECCCCCEEEEEcC-----------------CCcEEEEECCCcceeeeeccCCCcEEEEEECCCCC
Confidence            11     234678899999986666332                 3456667776555332222 233457899999999


Q ss_pred             EEEEEEcCCCeEEEEEeecCCC-cceEEe-----ccCCCCCCCceEECCCCCEEEEE
Q 026118          165 FLVVCESWKFRCVKHFLKVSGR-TDREIF-----IDNLPGGPDNVNLARDGSFWISI  215 (243)
Q Consensus       165 ~l~v~~~~~~~i~~~~~~~~~~-~~~~~~-----~~~~~~~~~~i~~d~~G~lwv~~  215 (243)
                      +|..+ ..++.|..|+...+.. ......     .....+....++++++|.+.++.
T Consensus      1141 ~lat~-~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~fs~dg~~l~s~ 1196 (1249)
T 3sfz_A         1141 LLATG-DDNGEIRIWNVSDGQLLHSCAPISVEEGTATHGGWVTDVCFSPDSKTLVSA 1196 (1249)
T ss_dssp             EEEEE-ETTSCCCEEESSSSCCCCCCCCCC-------CCSCCCEEEECTTSSCEEEE
T ss_pred             EEEEE-eCCCEEEEEECCCCceEEEeccccccccccccCceEEEEEECCCCCEEEEC
Confidence            66655 4567899999875322 111000     01122346779999999866554

>3lrv_A PRE-mRNA-splicing factor 19; PRP19, WD40, E3 ubiquitin ligase, spliceosome, DNA damage, D repair, mRNA processing, nucleus; 2.60A {Saccharomyces cerevisiae}

Probab=98.23  E-value=0.00033  Score=56.48  Aligned_cols=150  Identities=8%  Similarity=-0.023  Sum_probs=92.2

Q ss_pred             cccEEEcC--CCcEEE-EeCCCcEEEEc-cCCceeEec-ccCCccccceEEccCCCEEEEEeCCCcEEEEe-cCC-c--E
Q 026118           12 PEDVSVDG--NGVLYT-ATGDGWIKRMH-PNGTWEDWH-QVGSQSLLGLTTTKENNVIIVCDSQQGLLKVS-EEG-V--T   82 (243)
Q Consensus        12 p~~i~~d~--~g~l~~-~~~~~~i~~~~-~~g~~~~~~-~~~~~~~~~i~~~~~g~l~~v~~~~~gl~~~~-~~g-~--~   82 (243)
                      ..++++.+  ++.+++ +..++.|..++ ..++..... .....+...++++++|.++.++..++.|..+| .++ .  .
T Consensus       128 v~~~~~~~~~~~~~l~s~s~dg~i~~wd~~~~~~~~~~~~~~~~~i~~~~~~pdg~~lasg~~dg~i~iwd~~~~~~~~~  207 (343)
T 3lrv_A          128 IIYMYGHNEVNTEYFIWADNRGTIGFQSYEDDSQYIVHSAKSDVEYSSGVLHKDSLLLALYSPDGILDVYNLSSPDQASS  207 (343)
T ss_dssp             EEEEECCC---CCEEEEEETTCCEEEEESSSSCEEEEECCCSSCCCCEEEECTTSCEEEEECTTSCEEEEESSCTTSCCE
T ss_pred             EEEEEcCCCCCCCEEEEEeCCCcEEEEECCCCcEEEEEecCCCCceEEEEECCCCCEEEEEcCCCEEEEEECCCCCCCcc
Confidence            45677888  887665 55888999999 445443322 11122233889999999855556556677888 665 2  2


Q ss_pred             EEEeccCCCcccCCccEEEcCCCcEEEEeCCCCCCcccccccccccCCCceEEEEeCCCCeeEEeecc---c-ccc--ce
Q 026118           83 VLVSQFNGSQLRFANDVIEASDGSLYFTVSSTKFTPAEYYLDLVSGEPHGVLLKYDPSTNQTSLVLDG---L-YFA--NG  156 (243)
Q Consensus        83 ~~~~~~~~~~~~~~~~l~~d~~G~l~v~~~~~~~~~~~~~~~~~~~~~~g~v~~~~~~~~~~~~~~~~---~-~~~--~g  156 (243)
                      .+.    ......+.+++++|+|.+.++.+.                  +.|..+|..+++.......   . ...  ..
T Consensus       208 ~~~----~~h~~~v~~l~fs~~g~~l~s~~~------------------~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~  265 (343)
T 3lrv_A          208 RFP----VDEEAKIKEVKFADNGYWMVVECD------------------QTVVCFDLRKDVGTLAYPTYTIPEFKTGTVT  265 (343)
T ss_dssp             ECC----CCTTSCEEEEEECTTSSEEEEEES------------------SBEEEEETTSSTTCBSSCCCBC-----CCEE
T ss_pred             EEe----ccCCCCEEEEEEeCCCCEEEEEeC------------------CeEEEEEcCCCCcceeecccccccccccceE
Confidence            221    111245778999999987776322                  3677788775543211111   1 111  24


Q ss_pred             EEEcCCCCEEEEEEcCCCeEEEEEeec
Q 026118          157 VALSEDERFLVVCESWKFRCVKHFLKV  183 (243)
Q Consensus       157 i~~~~dg~~l~v~~~~~~~i~~~~~~~  183 (243)
                      ++|+|+|++|.++...++.|..|+.+.
T Consensus       266 ~~~~~~g~~l~~~s~~d~~i~v~~~~~  292 (343)
T 3lrv_A          266 YDIDDSGKNMIAYSNESNSLTIYKFDK  292 (343)
T ss_dssp             EEECTTSSEEEEEETTTTEEEEEEECT
T ss_pred             EEECCCCCEEEEecCCCCcEEEEEEcc
Confidence            999999997777654477888888864

>2pbi_B Guanine nucleotide-binding protein subunit beta 5; helix WRAP, RGS domain, DEP domain, DHEX domain, GGL domain, propeller, signaling protein; 1.95A {Mus musculus}

Probab=98.21  E-value=0.0002  Score=58.23  Aligned_cols=146  Identities=11%  Similarity=0.029  Sum_probs=89.3

Q ss_pred             ccEEEcC--CC-cEEEEeCCCcEEEEc-cCCcee-EecccCCccccceEEccCCCEEEEEeCCCcEEEEe-cCC-cEEEE
Q 026118           13 EDVSVDG--NG-VLYTATGDGWIKRMH-PNGTWE-DWHQVGSQSLLGLTTTKENNVIIVCDSQQGLLKVS-EEG-VTVLV   85 (243)
Q Consensus        13 ~~i~~d~--~g-~l~~~~~~~~i~~~~-~~g~~~-~~~~~~~~~~~~i~~~~~g~l~~v~~~~~gl~~~~-~~g-~~~~~   85 (243)
                      .++.+.+  +| .|+.+..++.|..+| ..++.. .+........ +++++|+|+++..+..+.-+..+| ..+ .....
T Consensus       200 ~~~~~~~~~~g~~l~sgs~Dg~v~~wd~~~~~~~~~~~~h~~~v~-~v~~~p~~~~l~s~s~D~~v~lwd~~~~~~~~~~  278 (354)
T 2pbi_B          200 LCLDLAPSETGNTFVSGGCDKKAMVWDMRSGQCVQAFETHESDVN-SVRYYPSGDAFASGSDDATCRLYDLRADREVAIY  278 (354)
T ss_dssp             EEEEECCCSSCCEEEEEETTSCEEEEETTTCCEEEEECCCSSCEE-EEEECTTSSEEEEEETTSCEEEEETTTTEEEEEE
T ss_pred             EEEEEEeCCCCCEEEEEeCCCeEEEEECCCCcEEEEecCCCCCeE-EEEEeCCCCEEEEEeCCCeEEEEECCCCcEEEEE
Confidence            3455554  45 466666889999999 455433 3322223334 899999999856666555577777 554 22222


Q ss_pred             eccCCCcccCCccEEEcCCCcEEEEeCCCCCCcccccccccccCCCceEEEEeCCCCeeEEe-eccccccceEEEcCCCC
Q 026118           86 SQFNGSQLRFANDVIEASDGSLYFTVSSTKFTPAEYYLDLVSGEPHGVLLKYDPSTNQTSLV-LDGLYFANGVALSEDER  164 (243)
Q Consensus        86 ~~~~~~~~~~~~~l~~d~~G~l~v~~~~~~~~~~~~~~~~~~~~~~g~v~~~~~~~~~~~~~-~~~~~~~~gi~~~~dg~  164 (243)
                      ..  ......+.+++++++|++.++.+                 ..+.|..+|..+++.... .........++|+|+|+
T Consensus       279 ~~--~~~~~~~~~~~~s~~g~~l~~g~-----------------~d~~i~vwd~~~~~~~~~l~~h~~~v~~l~~spdg~  339 (354)
T 2pbi_B          279 SK--ESIIFGASSVDFSLSGRLLFAGY-----------------NDYTINVWDVLKGSRVSILFGHENRVSTLRVSPDGT  339 (354)
T ss_dssp             CC--TTCCSCEEEEEECTTSSEEEEEE-----------------TTSCEEEEETTTCSEEEEECCCSSCEEEEEECTTSS
T ss_pred             cC--CCcccceeEEEEeCCCCEEEEEE-----------------CCCcEEEEECCCCceEEEEECCCCcEEEEEECCCCC
Confidence            11  11122455788999998777632                 235688888766654433 33345567899999999


Q ss_pred             EEEEEEcCCCeEEEE
Q 026118          165 FLVVCESWKFRCVKH  179 (243)
Q Consensus       165 ~l~v~~~~~~~i~~~  179 (243)
                      +|..+ ..++.|..|
T Consensus       340 ~l~sg-s~D~~v~vW  353 (354)
T 2pbi_B          340 AFCSG-SWDHTLRVW  353 (354)
T ss_dssp             CEEEE-ETTSEEEEE
T ss_pred             EEEEE-cCCCCEEec
Confidence            55554 456777665

>1yfq_A Cell cycle arrest protein BUB3; WD repeat WD40 repeat beta transducin repeat all beta, signaling protein; 1.10A {Saccharomyces cerevisiae} SCOP: b.69.4.2 PDB: 1u4c_A 2i3s_A 2i3t_A

Probab=98.21  E-value=0.00012  Score=58.40  Aligned_cols=189  Identities=10%  Similarity=0.014  Sum_probs=108.9

Q ss_pred             CcccEEEcCCCc--EEEEeCCCcEEEEcc-CC-ceeEecc--cCCccccceEEccCCCEEEEEeCCCcEEEEe-cC--C-
Q 026118           11 HPEDVSVDGNGV--LYTATGDGWIKRMHP-NG-TWEDWHQ--VGSQSLLGLTTTKENNVIIVCDSQQGLLKVS-EE--G-   80 (243)
Q Consensus        11 ~p~~i~~d~~g~--l~~~~~~~~i~~~~~-~g-~~~~~~~--~~~~~~~~i~~~~~g~l~~v~~~~~gl~~~~-~~--g-   80 (243)
                      ...++++.+++.  |+++..++.|..++. .. +...+..  ...... .+++++ +++++++...+.+..++ .+  + 
T Consensus        58 ~v~~~~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~v~-~l~~~~-~~~l~s~~~d~~i~iwd~~~~~~~  135 (342)
T 1yfq_A           58 PLLCCNFIDNTDLQIYVGTVQGEILKVDLIGSPSFQALTNNEANLGIC-RICKYG-DDKLIAASWDGLIEVIDPRNYGDG  135 (342)
T ss_dssp             CEEEEEEEESSSEEEEEEETTSCEEEECSSSSSSEEECBSCCCCSCEE-EEEEET-TTEEEEEETTSEEEEECHHHHTTB
T ss_pred             ceEEEEECCCCCcEEEEEcCCCeEEEEEeccCCceEeccccCCCCceE-EEEeCC-CCEEEEEcCCCeEEEEcccccccc
Confidence            456788888777  666678899999985 43 4443332  223334 788988 77756666555677777 43  1 


Q ss_pred             cEEE-E---eccCCCcccCCccEEEcCCCcEEEEeCCCCCCcccccccccccCCCceEEEEeCCC-Ce--eEEe-ecccc
Q 026118           81 VTVL-V---SQFNGSQLRFANDVIEASDGSLYFTVSSTKFTPAEYYLDLVSGEPHGVLLKYDPST-NQ--TSLV-LDGLY  152 (243)
Q Consensus        81 ~~~~-~---~~~~~~~~~~~~~l~~d~~G~l~v~~~~~~~~~~~~~~~~~~~~~~g~v~~~~~~~-~~--~~~~-~~~~~  152 (243)
                      .... .   ....  ....+.++++++++ ++++.                  ..+.|..+|..+ +.  .... .....
T Consensus       136 ~~~~~~~~~~~~~--~~~~v~~~~~~~~~-l~~~~------------------~d~~i~i~d~~~~~~~~~~~~~~~~~~  194 (342)
T 1yfq_A          136 VIAVKNLNSNNTK--VKNKIFTMDTNSSR-LIVGM------------------NNSQVQWFRLPLCEDDNGTIEESGLKY  194 (342)
T ss_dssp             CEEEEESCSSSSS--SCCCEEEEEECSSE-EEEEE------------------STTEEEEEESSCCTTCCCEEEECSCSS
T ss_pred             cccccCCeeeEEe--eCCceEEEEecCCc-EEEEe------------------CCCeEEEEECCccccccceeeecCCCC
Confidence            1000 0   0111  12356678888887 66653                  235788888875 32  2222 22234


Q ss_pred             ccceEEEcC-CCCEEEEEEcCCCeEEEEEeecC--C--CcceEEeccCC--------CCCCCceEECCCCC-EEEEEecC
Q 026118          153 FANGVALSE-DERFLVVCESWKFRCVKHFLKVS--G--RTDREIFIDNL--------PGGPDNVNLARDGS-FWISIIKM  218 (243)
Q Consensus       153 ~~~gi~~~~-dg~~l~v~~~~~~~i~~~~~~~~--~--~~~~~~~~~~~--------~~~~~~i~~d~~G~-lwv~~~~~  218 (243)
                      ....+++++ +++.++++ ..++.|..++.+..  .  ......+....        ......++++++|+ |..+...+
T Consensus       195 ~i~~i~~~~~~~~~l~~~-~~dg~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg  273 (342)
T 1yfq_A          195 QIRDVALLPKEQEGYACS-SIDGRVAVEFFDDQGDDYNSSKRFAFRCHRLNLKDTNLAYPVNSIEFSPRHKFLYTAGSDG  273 (342)
T ss_dssp             CEEEEEECSGGGCEEEEE-ETTSEEEEEECCTTCCSTTCTTCEEEECCCCCTTCCSSCCCEEEEEECTTTCCEEEEETTS
T ss_pred             ceeEEEECCCCCCEEEEE-ecCCcEEEEEEcCCCcccccccceeeecccccccccccceeEEEEEEcCCCCEEEEecCCc
Confidence            567899999 99966655 45788888887643  0  11122221111        11355688888887 44444444


Q ss_pred             Cchhh
Q 026118          219 DPKGI  223 (243)
Q Consensus       219 ~~~~~  223 (243)
                      ....+
T Consensus       274 ~i~vw  278 (342)
T 1yfq_A          274 IISCW  278 (342)
T ss_dssp             CEEEE
T ss_pred             eEEEE
Confidence            33333

>3odt_A Protein DOA1; ubiquitin, nuclear protein; HET: MSE MES; 1.35A {Saccharomyces cerevisiae}

Probab=98.20  E-value=0.0002  Score=56.22  Aligned_cols=147  Identities=14%  Similarity=0.094  Sum_probs=95.8

Q ss_pred             cccEEEcC-CC-cEEEEeCCCcEEEEccCCceeEecccCCccccceEEccCCCEEEEEeCCCcEEEEe-cCC-c-EEEEe
Q 026118           12 PEDVSVDG-NG-VLYTATGDGWIKRMHPNGTWEDWHQVGSQSLLGLTTTKENNVIIVCDSQQGLLKVS-EEG-V-TVLVS   86 (243)
Q Consensus        12 p~~i~~d~-~g-~l~~~~~~~~i~~~~~~g~~~~~~~~~~~~~~~i~~~~~g~l~~v~~~~~gl~~~~-~~g-~-~~~~~   86 (243)
                      ..++++.+ ++ .++++..++.|..++.......+......+...+++++++.+ +++...+.+..++ .++ . ..+..
T Consensus       145 v~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~i~~~~~~~~~~~-~~~~~dg~i~i~d~~~~~~~~~~~~  223 (313)
T 3odt_A          145 VWDAKVVSFSENKFLTASADKTIKLWQNDKVIKTFSGIHNDVVRHLAVVDDGHF-ISCSNDGLIKLVDMHTGDVLRTYEG  223 (313)
T ss_dssp             EEEEEEEETTTTEEEEEETTSCEEEEETTEEEEEECSSCSSCEEEEEEEETTEE-EEEETTSEEEEEETTTCCEEEEEEC
T ss_pred             eeEEEEccCCCCEEEEEECCCCEEEEecCceEEEEeccCcccEEEEEEcCCCeE-EEccCCCeEEEEECCchhhhhhhhc
Confidence            34566654 55 455666888899998443344443312233337889999886 7777666788888 555 2 22221


Q ss_pred             ccCCCcccCCccEEEcCCCcEEEEeCCCCCCcccccccccccCCCceEEEEeCCCCeeEEeec-cccccceEEEcCCCCE
Q 026118           87 QFNGSQLRFANDVIEASDGSLYFTVSSTKFTPAEYYLDLVSGEPHGVLLKYDPSTNQTSLVLD-GLYFANGVALSEDERF  165 (243)
Q Consensus        87 ~~~~~~~~~~~~l~~d~~G~l~v~~~~~~~~~~~~~~~~~~~~~~g~v~~~~~~~~~~~~~~~-~~~~~~gi~~~~dg~~  165 (243)
                           ....+.+++++++|.++.+.                  ..+.|..+|..+++...... .......++++++++ 
T Consensus       224 -----~~~~i~~~~~~~~~~l~~~~------------------~dg~v~iwd~~~~~~~~~~~~~~~~i~~~~~~~~~~-  279 (313)
T 3odt_A          224 -----HESFVYCIKLLPNGDIVSCG------------------EDRTVRIWSKENGSLKQVITLPAISIWSVDCMSNGD-  279 (313)
T ss_dssp             -----CSSCEEEEEECTTSCEEEEE------------------TTSEEEEECTTTCCEEEEEECSSSCEEEEEECTTSC-
T ss_pred             -----CCceEEEEEEecCCCEEEEe------------------cCCEEEEEECCCCceeEEEeccCceEEEEEEccCCC-
Confidence                 12356788999999766653                  24678899988776554433 334567899999998 


Q ss_pred             EEEEEcCCCeEEEEEeecC
Q 026118          166 LVVCESWKFRCVKHFLKVS  184 (243)
Q Consensus       166 l~v~~~~~~~i~~~~~~~~  184 (243)
                      ++++ ..++.|..|+....
T Consensus       280 ~~~~-~~dg~i~iw~~~~~  297 (313)
T 3odt_A          280 IIVG-SSDNLVRIFSQEKS  297 (313)
T ss_dssp             EEEE-ETTSCEEEEESCGG
T ss_pred             EEEE-eCCCcEEEEeCCCC
Confidence            5554 45788999998753

>2pm7_B Protein transport protein SEC13, protein transport protein SEC31; beta propeller, alpha solenoid; 2.35A {Saccharomyces cerevisiae} PDB: 2pm9_B 2pm6_B 3iko_A 3mzk_A 3mzl_A

Probab=98.20  E-value=0.0012  Score=52.05  Aligned_cols=185  Identities=12%  Similarity=0.058  Sum_probs=99.9

Q ss_pred             eecccccCCcccEEEcCCCcE-EEEeCCCcEEEEccCC---c-eeEecccCCccccceEEcc--CCCEEEEEeCCCcEEE
Q 026118            3 KLGEGIVNHPEDVSVDGNGVL-YTATGDGWIKRMHPNG---T-WEDWHQVGSQSLLGLTTTK--ENNVIIVCDSQQGLLK   75 (243)
Q Consensus         3 ~~~~g~~~~p~~i~~d~~g~l-~~~~~~~~i~~~~~~g---~-~~~~~~~~~~~~~~i~~~~--~g~l~~v~~~~~gl~~   75 (243)
                      .+..+.-..-.+++++++|.. ..+..++.|..++..+   + ...+... ..+..++++.+  +|++|..+..++-+..
T Consensus         3 ~~~~~h~~~V~~~~~s~~g~~las~s~D~~v~iw~~~~~~~~~~~~l~gH-~~~V~~v~~s~~~~g~~l~s~s~D~~v~i   81 (297)
T 2pm7_B            3 VIANAHNEMIHDAVMDYYGKRMATCSSDKTIKIFEVEGETHKLIDTLTGH-EGPVWRVDWAHPKFGTILASCSYDGKVMI   81 (297)
T ss_dssp             EECCSCSSCEEEEEECTTSSEEEEEETTSCEEEEEBCSSCBCCCEEECCC-SSCEEEEEECCGGGCSEEEEEETTTEEEE
T ss_pred             eeccCCcCceEEEEECCCCCEEEEEeCCCEEEEEecCCCCcEEEEEEccc-cCCeEEEEecCCCcCCEEEEEcCCCEEEE
Confidence            344443334457899999864 4555888899888432   2 2222222 22333788864  4787566665555666


Q ss_pred             Ee-cCC-cEEEEeccCCCcccCCccEEEcCC--CcEEEEeCCCCCCcccccccccccCCCceEEEEeCCCCe---eEEee
Q 026118           76 VS-EEG-VTVLVSQFNGSQLRFANDVIEASD--GSLYFTVSSTKFTPAEYYLDLVSGEPHGVLLKYDPSTNQ---TSLVL  148 (243)
Q Consensus        76 ~~-~~g-~~~~~~~~~~~~~~~~~~l~~d~~--G~l~v~~~~~~~~~~~~~~~~~~~~~~g~v~~~~~~~~~---~~~~~  148 (243)
                      ++ .++ ...+.. ..+ ....+.++++.|+  |.++++.+                 ..+.|..++..++.   ...+.
T Consensus        82 Wd~~~~~~~~~~~-~~~-h~~~v~~v~~~p~~~g~~l~s~s-----------------~d~~v~~wd~~~~~~~~~~~~~  142 (297)
T 2pm7_B           82 WKEENGRWSQIAV-HAV-HSASVNSVQWAPHEYGPMLLVAS-----------------SDGKVSVVEFKENGTTSPIIID  142 (297)
T ss_dssp             EEBSSSCBCCCEE-ECC-CSSCEEEEEECCGGGCSEEEEEE-----------------TTSEEEEEEBCSSSCBCCEEEE
T ss_pred             EEcCCCceEEEEE-eec-CCCceeEEEeCcCCCCcEEEEEE-----------------CCCcEEEEEecCCCceeeeeee
Confidence            77 544 222111 111 1235678888886  76666532                 23466666665432   12222


Q ss_pred             ccccccceEEEcCC-------------CCEEEEEEcCCCeEEEEEeecCCCc--ceEEeccCCCCCCCceEECCCC
Q 026118          149 DGLYFANGVALSED-------------ERFLVVCESWKFRCVKHFLKVSGRT--DREIFIDNLPGGPDNVNLARDG  209 (243)
Q Consensus       149 ~~~~~~~gi~~~~d-------------g~~l~v~~~~~~~i~~~~~~~~~~~--~~~~~~~~~~~~~~~i~~d~~G  209 (243)
                      ......+.++|+|+             ++ ++++...++.|..++.......  ....+. .-......+++++++
T Consensus       143 ~h~~~v~~~~~~p~~~~~~~~~~~~~~~~-~l~sgs~D~~v~lwd~~~~~~~~~~~~~l~-~H~~~V~~v~~sp~~  216 (297)
T 2pm7_B          143 AHAIGVNSASWAPATIEEDGEHNGTKESR-KFVTGGADNLVKIWKYNSDAQTYVLESTLE-GHSDWVRDVAWSPTV  216 (297)
T ss_dssp             CCSSCEEEEEECCCC------------CC-EEEEEETTSCEEEEEEETTTTEEEEEEEEC-CCSSCEEEEEECCCC
T ss_pred             cccCccceEeecCCcccccccCCCCCCcc-eEEEEcCCCcEEEEEEcCCCceEEEEEEec-CCCCceEEEEECCCC
Confidence            22334567888886             45 4445456788999998753211  111221 112234567777764

>2xdw_A Prolyl endopeptidase; alpha/beta-hydrolase, amnesia, beta-propeller, hydrolase, in; HET: PHQ TAM; 1.35A {Sus scrofa} PDB: 1qfm_A 1qfs_A* 1h2w_A* 3eq7_A* 3eq8_A* 3eq9_A* 1e8m_A* 1e8n_A 1h2z_A 1uoo_A 1uop_A 1uoq_A 1o6f_A 1h2x_A 1h2y_A* 1o6g_A 1vz3_A 1e5t_A 1vz2_A 3ddu_A*

Probab=98.19  E-value=0.00012  Score=65.27  Aligned_cols=190  Identities=9%  Similarity=0.030  Sum_probs=103.0

Q ss_pred             ccEEEcCCCc-EEEEe-CCC----cEEEEc-cCCceeEecccCCccccceEEccCCCEEEEEeCCCc-------------
Q 026118           13 EDVSVDGNGV-LYTAT-GDG----WIKRMH-PNGTWEDWHQVGSQSLLGLTTTKENNVIIVCDSQQG-------------   72 (243)
Q Consensus        13 ~~i~~d~~g~-l~~~~-~~~----~i~~~~-~~g~~~~~~~~~~~~~~~i~~~~~g~l~~v~~~~~g-------------   72 (243)
                      .++++.+||. |.++. ..|    .|+.++ .+|+............ ++++++||+.|+++.....             
T Consensus       128 ~~~~~SPDg~~la~~~~~~G~~~~~i~v~d~~tg~~~~~~~~~~~~~-~~~wspDg~~l~~~~~~~~~~~~~~~~~~~~~  206 (710)
T 2xdw_A          128 RGYAFSEDGEYFAYGLSASGSDWVTIKFMKVDGAKELPDVLERVKFS-CMAWTHDGKGMFYNAYPQQDGKSDGTETSTNL  206 (710)
T ss_dssp             EEEEECTTSSEEEEEEEETTCSCEEEEEEETTTTEEEEEEEEEECSC-CEEECTTSSEEEEEECCCCSSCCSSSCCCCCC
T ss_pred             EEEEECCCCCEEEEEEcCCCCceEEEEEEECCCCCCCcccccCcccc-eEEEEeCCCEEEEEEECCccccccccccccCC
Confidence            4678889985 43333 232    688888 4555543222112223 7899999986566654333             


Q ss_pred             ---EEEEe-cCC-c--EEEEeccCCCcccCCccEEEcCCCcEE-EEeCCCCCCcccccccccccCCCceEEEEeCCC---
Q 026118           73 ---LLKVS-EEG-V--TVLVSQFNGSQLRFANDVIEASDGSLY-FTVSSTKFTPAEYYLDLVSGEPHGVLLKYDPST---  141 (243)
Q Consensus        73 ---l~~~~-~~g-~--~~~~~~~~~~~~~~~~~l~~d~~G~l~-v~~~~~~~~~~~~~~~~~~~~~~g~v~~~~~~~---  141 (243)
                         |++++ .++ .  ..+......  .....++.+++||+.. ++....             ......|+.+|.++   
T Consensus       207 ~~~v~~~~l~t~~~~~~~v~~~~~~--~~~~~~~~~SpDg~~l~~~~~~~-------------~~~~~~l~~~d~~~~~~  271 (710)
T 2xdw_A          207 HQKLYYHVLGTDQSEDILCAEFPDE--PKWMGGAELSDDGRYVLLSIREG-------------CDPVNRLWYCDLQQESN  271 (710)
T ss_dssp             CCEEEEEETTSCGGGCEEEECCTTC--TTCEEEEEECTTSCEEEEEEECS-------------SSSCCEEEEEEGGGSSS
T ss_pred             CCEEEEEECCCCcccceEEeccCCC--CeEEEEEEEcCCCCEEEEEEEcc-------------CCCccEEEEEECccccc
Confidence               77777 444 2  233221111  1234467899999743 332110             00135789898875   


Q ss_pred             ---C--eeEEeeccccccceEEEcCCCCEEEEEEcC---CCeEEEEEeecCCCcceEEeccCCC-CCCCceEECCCCCEE
Q 026118          142 ---N--QTSLVLDGLYFANGVALSEDERFLVVCESW---KFRCVKHFLKVSGRTDREIFIDNLP-GGPDNVNLARDGSFW  212 (243)
Q Consensus       142 ---~--~~~~~~~~~~~~~gi~~~~dg~~l~v~~~~---~~~i~~~~~~~~~~~~~~~~~~~~~-~~~~~i~~d~~G~lw  212 (243)
                         +  .++.+....... ...++++|+.+|+....   +..|++++.++......+.+..... ....++++.+++.|+
T Consensus       272 ~~~~~~~~~~l~~~~~~~-~~~~s~dg~~l~~~s~~~~~~~~l~~~d~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~lv  350 (710)
T 2xdw_A          272 GITGILKWVKLIDNFEGE-YDYVTNEGTVFTFKTNRHSPNYRLINIDFTDPEESKWKVLVPEHEKDVLEWVACVRSNFLV  350 (710)
T ss_dssp             SSCSSCCCEEEECSSSSC-EEEEEEETTEEEEEECTTCTTCEEEEEETTSCCGGGCEEEECCCSSCEEEEEEEETTTEEE
T ss_pred             ccCCccceEEeeCCCCcE-EEEEeccCCEEEEEECCCCCCCEEEEEeCCCCCcccceeccCCCCCCeEEEEEEEcCCEEE
Confidence               4  455554332222 23578899988887543   3479999876543223333332212 123445665555666


Q ss_pred             EEEecCC
Q 026118          213 ISIIKMD  219 (243)
Q Consensus       213 v~~~~~~  219 (243)
                      +.....+
T Consensus       351 ~~~~~~g  357 (710)
T 2xdw_A          351 LCYLHDV  357 (710)
T ss_dssp             EEEEETT
T ss_pred             EEEEECC
Confidence            6555443

>4aow_A Guanine nucleotide-binding protein subunit beta-2; receptor, WD-repeat, beta-propeller; 2.45A {Homo sapiens} PDB: 2zkq_a

Probab=98.16  E-value=0.00037  Score=55.51  Aligned_cols=148  Identities=13%  Similarity=0.037  Sum_probs=86.2

Q ss_pred             cEEEcCCC--cEEE-EeCCCcEEEEc-cCCceeEecccCCccccceEEccCCCEEEEEeCCCcEEEEe-cCCcEEEEecc
Q 026118           14 DVSVDGNG--VLYT-ATGDGWIKRMH-PNGTWEDWHQVGSQSLLGLTTTKENNVIIVCDSQQGLLKVS-EEGVTVLVSQF   88 (243)
Q Consensus        14 ~i~~d~~g--~l~~-~~~~~~i~~~~-~~g~~~~~~~~~~~~~~~i~~~~~g~l~~v~~~~~gl~~~~-~~g~~~~~~~~   88 (243)
                      .+++.+++  .+.+ +..++.|..++ ..++..........+..+++++++|++|+++..++.+..++ .++ +.+.. .
T Consensus       176 ~~~~~~~~~~~~~~s~~~d~~i~i~d~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~s~Dg~i~iwd~~~~-~~~~~-~  253 (340)
T 4aow_A          176 CVRFSPNSSNPIIVSCGWDKLVKVWNLANCKLKTNHIGHTGYLNTVTVSPDGSLCASGGKDGQAMLWDLNEG-KHLYT-L  253 (340)
T ss_dssp             EEEECSCSSSCEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEEEEETTCEEEEEETTTT-EEEEE-E
T ss_pred             ceEEccCCCCcEEEEEcCCCEEEEEECCCCceeeEecCCCCcEEEEEECCCCCEEEEEeCCCeEEEEEeccC-ceeee-e
Confidence            45555433  3443 34677788888 34443322221122333889999999856666555577777 554 11111 1


Q ss_pred             CCCcccCCccEEEcCCCcEEEEeCCCCCCcccccccccccCCCceEEEEeCCCCeeEEeec----------cccccceEE
Q 026118           89 NGSQLRFANDVIEASDGSLYFTVSSTKFTPAEYYLDLVSGEPHGVLLKYDPSTNQTSLVLD----------GLYFANGVA  158 (243)
Q Consensus        89 ~~~~~~~~~~l~~d~~G~l~v~~~~~~~~~~~~~~~~~~~~~~g~v~~~~~~~~~~~~~~~----------~~~~~~gi~  158 (243)
                      ..  ...+..+++.+++.+..+..                  .+.|..+|.+++.......          .......++
T Consensus       254 ~~--~~~v~~~~~~~~~~~~~~~~------------------d~~i~iwd~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~  313 (340)
T 4aow_A          254 DG--GDIINALCFSPNRYWLCAAT------------------GPSIKIWDLEGKIIVDELKQEVISTSSKAEPPQCTSLA  313 (340)
T ss_dssp             EC--SSCEEEEEECSSSSEEEEEE------------------TTEEEEEETTTTEEEEEECCC-------CCCCCEEEEE
T ss_pred             cC--CceEEeeecCCCCceeeccC------------------CCEEEEEECCCCeEEEeccccceeeeccCCCCCEEEEE
Confidence            11  13456778888887776532                  2467777777554332211          123356799


Q ss_pred             EcCCCCEEEEEEcCCCeEEEEEeecC
Q 026118          159 LSEDERFLVVCESWKFRCVKHFLKVS  184 (243)
Q Consensus       159 ~~~dg~~l~v~~~~~~~i~~~~~~~~  184 (243)
                      |+|+|++|+.+ ..++.|..|++..+
T Consensus       314 ~s~dg~~l~sg-s~Dg~v~iW~~~tG  338 (340)
T 4aow_A          314 WSADGQTLFAG-YTDNLVRVWQVTIG  338 (340)
T ss_dssp             ECTTSSEEEEE-ETTSCEEEEEEEC-
T ss_pred             ECCCCCEEEEE-eCCCEEEEEeCCCc
Confidence            99999966655 46788999998753

>3k26_A Polycomb protein EED; WD40, structural genomics, NPPSFA, national project on prote structural and functional analysis, structural genomics CON SGC; HET: M3L; 1.58A {Homo sapiens} PDB: 3jzn_A* 3k27_A* 3jpx_A* 3jzg_A* 3jzh_A* 3iiw_A* 3ijc_A* 3iiy_A* 3ij0_A* 3ij1_A* 2qxv_A

Probab=98.15  E-value=0.00034  Score=56.17  Aligned_cols=157  Identities=11%  Similarity=0.041  Sum_probs=97.7

Q ss_pred             ecccccCCcccEEEcCC---C--cEEEEeCCCcEEEEcc-CC-ceeEeccc-----CCccccceEEccC----CCEEEEE
Q 026118            4 LGEGIVNHPEDVSVDGN---G--VLYTATGDGWIKRMHP-NG-TWEDWHQV-----GSQSLLGLTTTKE----NNVIIVC   67 (243)
Q Consensus         4 ~~~g~~~~p~~i~~d~~---g--~l~~~~~~~~i~~~~~-~g-~~~~~~~~-----~~~~~~~i~~~~~----g~l~~v~   67 (243)
                      +.++.-....++++.++   +  .++++..++.|..++. .+ ....+...     ..... .++++++    |++|+++
T Consensus        13 ~~~~h~~~v~~i~~~p~~~~~~~~~~~~~~~~~v~vw~~~~~~~~~~~~~~~~~~~~~~v~-~~~~~~~~~~~~~~l~~~   91 (366)
T 3k26_A           13 LKEDHNQPLFGVQFNWHSKEGDPLVFATVGSNRVTLYECHSQGEIRLLQSYVDADADENFY-TCAWTYDSNTSHPLLAVA   91 (366)
T ss_dssp             EECTTCSCEEEEEECTTCCTTSCEEEEEEETTEEEEEEECGGGCEEEEEEEECSCTTCCEE-EEEEEECTTTCCEEEEEE
T ss_pred             eecCCCCceEEEEEecccCCCCceEEEECCCCEEEEEEcCCCcEEEeeeeccccCCCCcEE-EEEeccCCCCCCCEEEEe
Confidence            34443345567888863   3  3666666778888883 23 23332211     12234 7888887    6675666


Q ss_pred             eCCCcEEEEe-cCC-cEEEEeccCCCcccCCccEEEcC-CCcEEEEeCCCCCCcccccccccccCCCceEEEEeCCCCee
Q 026118           68 DSQQGLLKVS-EEG-VTVLVSQFNGSQLRFANDVIEAS-DGSLYFTVSSTKFTPAEYYLDLVSGEPHGVLLKYDPSTNQT  144 (243)
Q Consensus        68 ~~~~gl~~~~-~~g-~~~~~~~~~~~~~~~~~~l~~d~-~G~l~v~~~~~~~~~~~~~~~~~~~~~~g~v~~~~~~~~~~  144 (243)
                      ...+.|..++ .++ ......   + ....+.++++.+ +++++++.+                 ..+.|..+|..+++.
T Consensus        92 ~~dg~i~v~d~~~~~~~~~~~---~-~~~~i~~~~~~~~~~~~l~s~~-----------------~dg~i~iwd~~~~~~  150 (366)
T 3k26_A           92 GSRGIIRIINPITMQCIKHYV---G-HGNAINELKFHPRDPNLLLSVS-----------------KDHALRLWNIQTDTL  150 (366)
T ss_dssp             ETTCEEEEECTTTCCEEEEEE---S-CCSCEEEEEECSSCTTEEEEEE-----------------TTSCEEEEETTTTEE
T ss_pred             cCCCEEEEEEchhceEeeeec---C-CCCcEEEEEECCCCCCEEEEEe-----------------CCCeEEEEEeecCeE
Confidence            6555577777 555 222111   1 124567889999 888776632                 245788889887766


Q ss_pred             EEee----ccccccceEEEcCCCCEEEEEEcCCCeEEEEEeec
Q 026118          145 SLVL----DGLYFANGVALSEDERFLVVCESWKFRCVKHFLKV  183 (243)
Q Consensus       145 ~~~~----~~~~~~~gi~~~~dg~~l~v~~~~~~~i~~~~~~~  183 (243)
                      ....    ........++++++++.|+.+ ..++.|..|+...
T Consensus       151 ~~~~~~~~~~~~~v~~~~~~~~~~~l~~~-~~dg~i~i~d~~~  192 (366)
T 3k26_A          151 VAIFGGVEGHRDEVLSADYDLLGEKIMSC-GMDHSLKLWRINS  192 (366)
T ss_dssp             EEEECSTTSCSSCEEEEEECTTSSEEEEE-ETTSCEEEEESCS
T ss_pred             EEEecccccccCceeEEEECCCCCEEEEe-cCCCCEEEEECCC
Confidence            5543    233456789999999966655 4568899999763

>2xzm_R RACK1; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_R

Probab=98.15  E-value=0.0018  Score=52.09  Aligned_cols=179  Identities=11%  Similarity=0.030  Sum_probs=100.7

Q ss_pred             cccEEE-----cC-CCc-EEEEeCCCcEEEEccC-Cc-------eeEecccCCccccceEEccCCCEEEEEeCCCcEEEE
Q 026118           12 PEDVSV-----DG-NGV-LYTATGDGWIKRMHPN-GT-------WEDWHQVGSQSLLGLTTTKENNVIIVCDSQQGLLKV   76 (243)
Q Consensus        12 p~~i~~-----d~-~g~-l~~~~~~~~i~~~~~~-g~-------~~~~~~~~~~~~~~i~~~~~g~l~~v~~~~~gl~~~   76 (243)
                      -.++++     .+ ++. |..+..++.|..++.. +.       ..........+...+++++++.++..+..++-+..+
T Consensus        24 V~~~~~~~s~~~~~d~~~l~sgs~D~~v~iWd~~~~~~~~~~~~~~~~l~~h~~~V~~~~~~~~~~~l~s~s~D~~v~lw  103 (343)
T 2xzm_R           24 VTSIVAGFSQKENEDSPVLISGSRDKTVMIWKLYEEEQNGYFGIPHKALTGHNHFVSDLALSQENCFAISSSWDKTLRLW  103 (343)
T ss_dssp             EEEEEECCCSSTTCCCCEEEEEETTSCEEEEEECSSCCSSBSEEEEEEECCCSSCEEEEEECSSTTEEEEEETTSEEEEE
T ss_pred             hhheeeEEEeecCCCCCEEEEEcCCCEEEEEECCcCCcccccccccchhccCCCceEEEEECCCCCEEEEEcCCCcEEEE
Confidence            346777     54 675 4455588889888732 11       111111112233378999999985666655556677


Q ss_pred             e-cCC--cEEEEeccCCCcccCCccEEEcCCCcEEEEeCCCCCCcccccccccccCCCceEEEEeCCCCeeEEee---cc
Q 026118           77 S-EEG--VTVLVSQFNGSQLRFANDVIEASDGSLYFTVSSTKFTPAEYYLDLVSGEPHGVLLKYDPSTNQTSLVL---DG  150 (243)
Q Consensus        77 ~-~~g--~~~~~~~~~~~~~~~~~~l~~d~~G~l~v~~~~~~~~~~~~~~~~~~~~~~g~v~~~~~~~~~~~~~~---~~  150 (243)
                      + .++  ...+..     ....+.+++++|+|++.++.+                 ..+.|..+|..+.......   ..
T Consensus       104 d~~~~~~~~~~~~-----h~~~v~~v~~sp~~~~l~s~~-----------------~d~~i~~wd~~~~~~~~~~~~~~~  161 (343)
T 2xzm_R          104 DLRTGTTYKRFVG-----HQSEVYSVAFSPDNRQILSAG-----------------AEREIKLWNILGECKFSSAEKENH  161 (343)
T ss_dssp             ETTSSCEEEEEEC-----CCSCEEEEEECSSTTEEEEEE-----------------TTSCEEEEESSSCEEEECCTTTSC
T ss_pred             ECCCCcEEEEEcC-----CCCcEEEEEECCCCCEEEEEc-----------------CCCEEEEEeccCCceeeeecccCC
Confidence            7 666  222221     123567889999998776632                 2346767776633322222   11


Q ss_pred             ccccceEEEcCCC----------CEEEEEEcCCCeEEEEEeecCCCcceEEeccCCCCCCCceEECCCCCEEEEEec
Q 026118          151 LYFANGVALSEDE----------RFLVVCESWKFRCVKHFLKVSGRTDREIFIDNLPGGPDNVNLARDGSFWISIIK  217 (243)
Q Consensus       151 ~~~~~gi~~~~dg----------~~l~v~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~i~~d~~G~lwv~~~~  217 (243)
                      ......++++|++          . ++++...++.|..++...   .....+. ........++++++|++.++...
T Consensus       162 ~~~v~~~~~~~~~~~~~~~~~~~~-~l~s~~~d~~i~iwd~~~---~~~~~~~-~h~~~v~~~~~s~~g~~l~sgs~  233 (343)
T 2xzm_R          162 SDWVSCVRYSPIMKSANKVQPFAP-YFASVGWDGRLKVWNTNF---QIRYTFK-AHESNVNHLSISPNGKYIATGGK  233 (343)
T ss_dssp             SSCEEEEEECCCCCSCSCCCSSCC-EEEEEETTSEEEEEETTT---EEEEEEE-CCSSCEEEEEECTTSSEEEEEET
T ss_pred             CceeeeeeeccccccccccCCCCC-EEEEEcCCCEEEEEcCCC---ceeEEEc-CccccceEEEECCCCCEEEEEcC
Confidence            2334678888876          5 444445678899888322   1112221 22234566888899886554443

>3dm0_A Maltose-binding periplasmic protein fused with RACK1; MBP RACK1A, receptor for activiated protein C-kinase 1, beta-propeller WD40 repeat; HET: GLC; 2.40A {Escherichia coli}

Probab=98.14  E-value=0.00069  Score=60.08  Aligned_cols=181  Identities=13%  Similarity=0.044  Sum_probs=106.0

Q ss_pred             cccEEEcCCC-cE-EEEeCCCcEEEEccC--Cc----ee-EecccCCccccceEEccCCCEEEEEeCCCcEEEEe-cCC-
Q 026118           12 PEDVSVDGNG-VL-YTATGDGWIKRMHPN--GT----WE-DWHQVGSQSLLGLTTTKENNVIIVCDSQQGLLKVS-EEG-   80 (243)
Q Consensus        12 p~~i~~d~~g-~l-~~~~~~~~i~~~~~~--g~----~~-~~~~~~~~~~~~i~~~~~g~l~~v~~~~~gl~~~~-~~g-   80 (243)
                      -.+|++.+++ .+ ..+..++.|..++..  ..    .. .+........ +++++++|++|..+..++.|..++ .++ 
T Consensus       385 V~~v~~~~~~~~~l~s~s~D~~i~~W~~~~~~~~~~~~~~~~~~h~~~v~-~v~~s~~g~~l~sgs~Dg~v~vwd~~~~~  463 (694)
T 3dm0_A          385 VTAIATPIDNADIIVSASRDKSIILWKLTKDDKAYGVAQRRLTGHSHFVE-DVVLSSDGQFALSGSWDGELRLWDLAAGV  463 (694)
T ss_dssp             EEEEECCTTCCSEEEEEETTSEEEEEECCCSTTCSCEEEEEEECCSSCEE-EEEECTTSSEEEEEETTSEEEEEETTTTE
T ss_pred             eEEEEecCCCCCEEEEEeCCCcEEEEEccCCCcccccccceecCCCCcEE-EEEECCCCCEEEEEeCCCcEEEEECCCCc
Confidence            4467777644 44 455688889888732  11    11 1211112234 789999999856666555577777 666 


Q ss_pred             c-EEEEeccCCCcccCCccEEEcCCCcEEEEeCCCCCCcccccccccccCCCceEEEEeCCCCeeEEeec----cccccc
Q 026118           81 V-TVLVSQFNGSQLRFANDVIEASDGSLYFTVSSTKFTPAEYYLDLVSGEPHGVLLKYDPSTNQTSLVLD----GLYFAN  155 (243)
Q Consensus        81 ~-~~~~~~~~~~~~~~~~~l~~d~~G~l~v~~~~~~~~~~~~~~~~~~~~~~g~v~~~~~~~~~~~~~~~----~~~~~~  155 (243)
                      . ..+..     ....+.+++++++|+..++.+                 ..+.|..+|..+.....+..    ......
T Consensus       464 ~~~~~~~-----h~~~v~~~~~s~~~~~l~s~s-----------------~D~~i~iwd~~~~~~~~~~~~~~~h~~~v~  521 (694)
T 3dm0_A          464 STRRFVG-----HTKDVLSVAFSLDNRQIVSAS-----------------RDRTIKLWNTLGECKYTISEGGEGHRDWVS  521 (694)
T ss_dssp             EEEEEEC-----CSSCEEEEEECTTSSCEEEEE-----------------TTSCEEEECTTSCEEEEECSSTTSCSSCEE
T ss_pred             ceeEEeC-----CCCCEEEEEEeCCCCEEEEEe-----------------CCCEEEEEECCCCcceeeccCCCCCCCcEE
Confidence            2 22221     123467889999998776632                 23467777765443333321    123356


Q ss_pred             eEEEcCCCC-EEEEEEcCCCeEEEEEeecCCCcceEEeccCCCCCCCceEECCCCCEEEEEecC
Q 026118          156 GVALSEDER-FLVVCESWKFRCVKHFLKVSGRTDREIFIDNLPGGPDNVNLARDGSFWISIIKM  218 (243)
Q Consensus       156 gi~~~~dg~-~l~v~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~i~~d~~G~lwv~~~~~  218 (243)
                      .+++++++. .++++...++.|..+++.....  ...+. ...+....++++++|++.++....
T Consensus       522 ~~~~~~~~~~~~l~s~s~d~~v~vwd~~~~~~--~~~~~-~h~~~v~~v~~spdg~~l~sg~~D  582 (694)
T 3dm0_A          522 CVRFSPNTLQPTIVSASWDKTVKVWNLSNCKL--RSTLA-GHTGYVSTVAVSPDGSLCASGGKD  582 (694)
T ss_dssp             EEEECSCSSSCEEEEEETTSCEEEEETTTCCE--EEEEC-CCSSCEEEEEECTTSSEEEEEETT
T ss_pred             EEEEeCCCCcceEEEEeCCCeEEEEECCCCcE--EEEEc-CCCCCEEEEEEeCCCCEEEEEeCC
Confidence            789999863 2455556678899999765321  12221 223345678999999876665443

>3c5m_A Oligogalacturonate lyase; blade-shaped beta-propeller, structural genomics, PSI-2, protein structure initiative; 2.60A {Vibrio parahaemolyticus rimd 2210633}

Probab=98.13  E-value=3.3e-05  Score=63.14  Aligned_cols=193  Identities=12%  Similarity=0.040  Sum_probs=99.3

Q ss_pred             cccEEEcCCCc-EEEE-eC--CCcEEEEcc-CCceeEecccCCccccceEEccCCCEEEEEeCCCcEEEEe-cCC-cEEE
Q 026118           12 PEDVSVDGNGV-LYTA-TG--DGWIKRMHP-NGTWEDWHQVGSQSLLGLTTTKENNVIIVCDSQQGLLKVS-EEG-VTVL   84 (243)
Q Consensus        12 p~~i~~d~~g~-l~~~-~~--~~~i~~~~~-~g~~~~~~~~~~~~~~~i~~~~~g~l~~v~~~~~gl~~~~-~~g-~~~~   84 (243)
                      ...+++.++|. |.++ ..  ...|+.++. .++..............+.+++||+.|+++.....|+.++ .++ .+.+
T Consensus        38 ~~~~~~SpdG~~l~~~~~~~g~~~l~~~d~~~~~~~~l~~~~~~~~~~~~~spdg~~l~~~~~~~~l~~~d~~~~~~~~~  117 (396)
T 3c5m_A           38 FYQKCFTQDGKKLLFAGDFDGNRNYYLLNLETQQAVQLTEGKGDNTFGGFISTDERAFFYVKNELNLMKVDLETLEEQVI  117 (396)
T ss_dssp             TTSCCBCTTSCEEEEEECTTSSCEEEEEETTTTEEEECCCSSCBCTTTCEECTTSSEEEEEETTTEEEEEETTTCCEEEE
T ss_pred             eecCcCCCCCCEEEEEEecCCCceEEEEECCCCcEEEeecCCCCccccceECCCCCEEEEEEcCCcEEEEECCCCCcEEE
Confidence            45677888885 4444 32  236888884 4554444332222231377899998755655555689998 555 4444


Q ss_pred             EeccCCCcccCCccEEEcCCCcEEEEeCC----------CCCCccccccccc---ccCCCceEEEEeCCCCeeEEeeccc
Q 026118           85 VSQFNGSQLRFANDVIEASDGSLYFTVSS----------TKFTPAEYYLDLV---SGEPHGVLLKYDPSTNQTSLVLDGL  151 (243)
Q Consensus        85 ~~~~~~~~~~~~~~l~~d~~G~l~v~~~~----------~~~~~~~~~~~~~---~~~~~g~v~~~~~~~~~~~~~~~~~  151 (243)
                      ......          ..++|+..+....          ..+.+..-.+...   .......|+.+|.++++.+.+....
T Consensus       118 ~~~~~~----------~~~~g~~l~~~~~~~~~~~~~~~~~~spdg~~~~~~~~~~~~~~~~l~~~d~~~g~~~~~~~~~  187 (396)
T 3c5m_A          118 YTVDEE----------WKGYGTWVANSDCTKLVGIEILKRDWQPLTSWEKFAEFYHTNPTCRLIKVDIETGELEVIHQDT  187 (396)
T ss_dssp             EECCTT----------EEEEEEEEECTTSSEEEEEEEEGGGCCCCCSHHHHHHHHHTCCCEEEEEEETTTCCEEEEEEES
T ss_pred             Eecccc----------cCCCCCEEEeccCCccccccccccccCCCCcceeeeeeccCCCcceEEEEECCCCcEEeeccCC
Confidence            321111          1112211110000          0000000000000   0123457999999988877766544


Q ss_pred             cccceEEEcC-CCCEEEEEEcCC-----CeEEEEEeecCCCcceEEeccCC-CCCCCceEECCCCC-EEEEEec
Q 026118          152 YFANGVALSE-DERFLVVCESWK-----FRCVKHFLKVSGRTDREIFIDNL-PGGPDNVNLARDGS-FWISIIK  217 (243)
Q Consensus       152 ~~~~gi~~~~-dg~~l~v~~~~~-----~~i~~~~~~~~~~~~~~~~~~~~-~~~~~~i~~d~~G~-lwv~~~~  217 (243)
                      .....++++| +++.|++.....     ..|+.++.++..   .+.+.... ...+..++++++|+ |+++...
T Consensus       188 ~~~~~~~~sp~dg~~l~~~~~~~~~~~~~~l~~~d~~~~~---~~~l~~~~~~~~~~~~~~spdg~~l~~~~~~  258 (396)
T 3c5m_A          188 AWLGHPIYRPFDDSTVGFCHEGPHDLVDARMWLVNEDGSN---VRKIKEHAEGESCTHEFWIPDGSAMAYVSYF  258 (396)
T ss_dssp             SCEEEEEEETTEEEEEEEEECSCSSSCSCCCEEEETTSCC---CEESSCCCTTEEEEEEEECTTSSCEEEEEEE
T ss_pred             cccccceECCCCCCEEEEEecCCCCCCCceEEEEECCCCc---eeEeeccCCCccccceEECCCCCEEEEEecC
Confidence            5566789999 787666554322     468888876532   12222111 11234468888887 5555443

>2wg3_C Hedgehog-interacting protein; lipoprotein, development, membrane, secreted, protease, PALM hydrolase, developmental protein, autocatalytic cleavage; HET: NAG; 2.60A {Homo sapiens} PDB: 2wg4_B 2wfx_B 2wft_A 3ho3_A 3ho4_A 3ho5_A

Probab=98.11  E-value=8.4e-05  Score=62.93  Aligned_cols=150  Identities=17%  Similarity=0.108  Sum_probs=84.2

Q ss_pred             CCcccEEEcCCCcEEEEeC------------------CCcEEEEccCCc---------------------eeEecccCCc
Q 026118           10 NHPEDVSVDGNGVLYTATG------------------DGWIKRMHPNGT---------------------WEDWHQVGSQ   50 (243)
Q Consensus        10 ~~p~~i~~d~~g~l~~~~~------------------~~~i~~~~~~g~---------------------~~~~~~~~~~   50 (243)
                      .....|++++||.||++..                  .|+|+|+++++.                     ...|.....+
T Consensus       139 H~g~~l~fgpDG~LYv~~Gd~~~~~~~~~~~q~~~~~~GkIlRi~~dg~~~~~~y~iP~dNPf~~~~~~~~eI~a~G~RN  218 (463)
T 2wg3_C          139 HLGGQLLFGPDGFLYIILGDGMITLDDMEEMDGLSDFTGSVLRLDVDTDMCNVPYSIPRSNPHFNSTNQPPEVFAHGLHD  218 (463)
T ss_dssp             SCEEEEEECTTSCEEEEECCTTCCHHHHHHCTTCCSCTTEEEEEBCCCCCSSCSCBCCTTSTTTTCSSSCTTEEEECCSS
T ss_pred             ccCCcEeECCCCcEEEEeCCCCCCCCccccccCcCCCCeeEEEEECCCCcccccCcCCCCCCCcCCCCCcccEEEECCCC
Confidence            3466799999999999862                  256999998773                     2345555578


Q ss_pred             cccceEEccC-----CCE-EEEEeC-CC-----cEEEEecCC-c---EEEEeccCCCcccCCccEEEcC-------CCcE
Q 026118           51 SLLGLTTTKE-----NNV-IIVCDS-QQ-----GLLKVSEEG-V---TVLVSQFNGSQLRFANDVIEAS-------DGSL  107 (243)
Q Consensus        51 ~~~~i~~~~~-----g~l-~~v~~~-~~-----gl~~~~~~g-~---~~~~~~~~~~~~~~~~~l~~d~-------~G~l  107 (243)
                      |. +|++++.     |+| +|+++. +.     .|..+.+.+ .   .++.. .....-..+.++++..       .|.+
T Consensus       219 p~-gla~dp~tg~~~G~l~~~~~D~~G~~~~~~ei~~i~~G~~yG~~~P~~~-~~~~~g~Ap~G~~~Y~G~~fP~~~g~~  296 (463)
T 2wg3_C          219 PG-RCAVDRHPTDININLTILCSDSNGKNRSSARILQIIKGKDYESEPSLLE-FKPFSNGPLVGGFVYRGCQSERLYGSY  296 (463)
T ss_dssp             CC-BEEEESSCSSTTCSEEEEEECC------CEEEEEEC----CCSCCCCEE-CCC----CEEEEEECCCSSCTTTTTCE
T ss_pred             cc-eEEECCCCCCcccceEEEecccCCCCCCCCeEeeeccCCCCCCCCCeEE-eeCCCCccccceEEEeCCCChhhcceE
Confidence            89 9999987     554 255553 11     122221111 1   11111 0000002445555532       3456


Q ss_pred             EEEeCCCCCCcccccccccccCCCceEEEEeCCCC----eeEEee-c--------cccccceEEEcCCCCEEEEEEc---
Q 026118          108 YFTVSSTKFTPAEYYLDLVSGEPHGVLLKYDPSTN----QTSLVL-D--------GLYFANGVALSEDERFLVVCES---  171 (243)
Q Consensus       108 ~v~~~~~~~~~~~~~~~~~~~~~~g~v~~~~~~~~----~~~~~~-~--------~~~~~~gi~~~~dg~~l~v~~~---  171 (243)
                      ++++.                  .+.|+++..+..    +.+.+. .        ....+.++++++||. |||++.   
T Consensus       297 f~~~~------------------~g~i~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~r~~~v~~~pdG~-Lyv~~~~~~  357 (463)
T 2wg3_C          297 VFGDR------------------NGNFLTLQQSPVTKQWQEKPLCLGTSGSCRGYFSGHILGFGEDELGE-VYILSSSKS  357 (463)
T ss_dssp             EEEET------------------TSCEEEEEC-----CCEEEEECEEETTSSCSCCCSEEEEEEECTTCC-EEEEEESSC
T ss_pred             EEecC------------------CCcEEEEEeCCCCceeeEEEeecCCcccccccccCcceEEEECCCCC-EEEEeccCC
Confidence            66642                  246777765422    112221 1        134678999999998 999986   


Q ss_pred             ----CCCeEEEEE
Q 026118          172 ----WKFRCVKHF  180 (243)
Q Consensus       172 ----~~~~i~~~~  180 (243)
                          .++.|+|+.
T Consensus       358 ~~~~~~G~I~Ri~  370 (463)
T 2wg3_C          358 MTQTHNGKLYKIV  370 (463)
T ss_dssp             GGGCSSEEEEEEE
T ss_pred             cccCCCCcEEEec
Confidence                467899986

>2pm7_B Protein transport protein SEC13, protein transport protein SEC31; beta propeller, alpha solenoid; 2.35A {Saccharomyces cerevisiae} PDB: 2pm9_B 2pm6_B 3iko_A 3mzk_A 3mzl_A

Probab=98.10  E-value=0.0012  Score=52.06  Aligned_cols=184  Identities=13%  Similarity=0.095  Sum_probs=95.9

Q ss_pred             ccEEEcC--CCc-EEEEeCCCcEEEEcc-CCce---eEecccCCccccceEEccC--CCEEEEEeCCCcEEEEe-cCC--
Q 026118           13 EDVSVDG--NGV-LYTATGDGWIKRMHP-NGTW---EDWHQVGSQSLLGLTTTKE--NNVIIVCDSQQGLLKVS-EEG--   80 (243)
Q Consensus        13 ~~i~~d~--~g~-l~~~~~~~~i~~~~~-~g~~---~~~~~~~~~~~~~i~~~~~--g~l~~v~~~~~gl~~~~-~~g--   80 (243)
                      .++++.+  +|. |..+..++.|..++. .++.   ..+........ .++++++  |.+|.++..++.+..++ .++  
T Consensus        57 ~~v~~s~~~~g~~l~s~s~D~~v~iWd~~~~~~~~~~~~~~h~~~v~-~v~~~p~~~g~~l~s~s~d~~v~~wd~~~~~~  135 (297)
T 2pm7_B           57 WRVDWAHPKFGTILASCSYDGKVMIWKEENGRWSQIAVHAVHSASVN-SVQWAPHEYGPMLLVASSDGKVSVVEFKENGT  135 (297)
T ss_dssp             EEEEECCGGGCSEEEEEETTTEEEEEEBSSSCBCCCEEECCCSSCEE-EEEECCGGGCSEEEEEETTSEEEEEEBCSSSC
T ss_pred             EEEEecCCCcCCEEEEEcCCCEEEEEEcCCCceEEEEEeecCCCcee-EEEeCcCCCCcEEEEEECCCcEEEEEecCCCc
Confidence            4577754  365 445568888999983 4432   22221112234 7888886  77756666555566666 433  


Q ss_pred             cEEEEeccCCCcccCCccEEEcCC-------------CcEEEEeCCCCCCcccccccccccCCCceEEEEeCCCCe----
Q 026118           81 VTVLVSQFNGSQLRFANDVIEASD-------------GSLYFTVSSTKFTPAEYYLDLVSGEPHGVLLKYDPSTNQ----  143 (243)
Q Consensus        81 ~~~~~~~~~~~~~~~~~~l~~d~~-------------G~l~v~~~~~~~~~~~~~~~~~~~~~~g~v~~~~~~~~~----  143 (243)
                      .....  ..+ ....+.++++.|+             ++++++-+                 ..+.|..+|..+++    
T Consensus       136 ~~~~~--~~~-h~~~v~~~~~~p~~~~~~~~~~~~~~~~~l~sgs-----------------~D~~v~lwd~~~~~~~~~  195 (297)
T 2pm7_B          136 TSPII--IDA-HAIGVNSASWAPATIEEDGEHNGTKESRKFVTGG-----------------ADNLVKIWKYNSDAQTYV  195 (297)
T ss_dssp             BCCEE--EEC-CSSCEEEEEECCCC------------CCEEEEEE-----------------TTSCEEEEEEETTTTEEE
T ss_pred             eeeee--eec-ccCccceEeecCCcccccccCCCCCCcceEEEEc-----------------CCCcEEEEEEcCCCceEE
Confidence            21111  111 1123556677765             34555422                 12344444443332    


Q ss_pred             eE-EeeccccccceEEEcCCC--CEEEEEEcCCCeEEEEEeecCCCcce-EEec-cCCCCCCCceEECCCCCEEEEEec
Q 026118          144 TS-LVLDGLYFANGVALSEDE--RFLVVCESWKFRCVKHFLKVSGRTDR-EIFI-DNLPGGPDNVNLARDGSFWISIIK  217 (243)
Q Consensus       144 ~~-~~~~~~~~~~gi~~~~dg--~~l~v~~~~~~~i~~~~~~~~~~~~~-~~~~-~~~~~~~~~i~~d~~G~lwv~~~~  217 (243)
                      .. .+.........++|+|++  ..++++...++.|..++.+....... ..+. .........++++++|++.++...
T Consensus       196 ~~~~l~~H~~~V~~v~~sp~~~~~~~las~s~D~~v~iWd~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~las~~~  274 (297)
T 2pm7_B          196 LESTLEGHSDWVRDVAWSPTVLLRSYMASVSQDRTCIIWTQDNEQGPWKKTLLKEEKFPDVLWRASWSLSGNVLALSGG  274 (297)
T ss_dssp             EEEEECCCSSCEEEEEECCCCSSSEEEEEEETTSCEEEEEESSTTSCCEEEESSSSCCSSCEEEEEECSSSCCEEEEET
T ss_pred             EEEEecCCCCceEEEEECCCCCCceEEEEEECCCcEEEEEeCCCCCccceeeeecccCCCcEEEEEECCCCCEEEEEcC
Confidence            21 222233456789999985  23555556778899999875321111 1221 111223445788888886554433

>2gop_A Trilobed protease; beta propeller, open velcro, hydrolase; 2.00A {Pyrococcus furiosus}

Probab=98.08  E-value=0.00053  Score=55.01  Aligned_cols=145  Identities=7%  Similarity=-0.016  Sum_probs=83.7

Q ss_pred             cccEEEcCCCc-EEEEe-CC--C--cEEEEcc-CCceeEecccCCccccceEEccCCCEEEEEeCC--------------
Q 026118           12 PEDVSVDGNGV-LYTAT-GD--G--WIKRMHP-NGTWEDWHQVGSQSLLGLTTTKENNVIIVCDSQ--------------   70 (243)
Q Consensus        12 p~~i~~d~~g~-l~~~~-~~--~--~i~~~~~-~g~~~~~~~~~~~~~~~i~~~~~g~l~~v~~~~--------------   70 (243)
                      ...+++.|||. |.+.. ..  +  .|+.++. .++......... .. .+.++|||+.|+++...              
T Consensus        61 ~~~~~~SpDg~~la~~~~~~~~~~~~l~~~~~~~g~~~~l~~~~~-~~-~~~wspdg~~l~~~~~~~~~~~~~~~~~~~~  138 (347)
T 2gop_A           61 ATMPRISPDGKKIAFMRANEEKKVSEIWVADLETLSSKKILEAKN-IR-SLEWNEDSRKLLIVGFKRREDEDFIFEDDVP  138 (347)
T ss_dssp             CEEEEECTTSSEEEEEEEETTTTEEEEEEEETTTTEEEEEEEESE-EE-EEEECTTSSEEEEEEECCCC---------CC
T ss_pred             CCCeEECCCCCEEEEEEeccCCCcceEEEEECCCCceEEEEcCCC-cc-ceeECCCCCEEEEEEccCCCcCCcEEEcccc
Confidence            45578888885 54443 22  2  3788874 455444333222 34 78899999864554321              


Q ss_pred             -------------CcEEEEe-cCC-c-EEEEeccCCCcccCCccEEEcCCCcEEEEeCCCCCCcccccccccccCC-Cce
Q 026118           71 -------------QGLLKVS-EEG-V-TVLVSQFNGSQLRFANDVIEASDGSLYFTVSSTKFTPAEYYLDLVSGEP-HGV  133 (243)
Q Consensus        71 -------------~gl~~~~-~~g-~-~~~~~~~~~~~~~~~~~l~~d~~G~l~v~~~~~~~~~~~~~~~~~~~~~-~g~  133 (243)
                                   ..|+.++ .++ . +.+..  .     .+..++++|+| ++++.....-         ..... ...
T Consensus       139 ~~~~g~~~~~~~~~~l~~~d~~~~~~~~~l~~--~-----~~~~~~~spdg-~~~~~~~~~~---------~~~~~~~~~  201 (347)
T 2gop_A          139 AWFDDLGFFDGEKTTFWIFDTESEEVIEEFEK--P-----RFSSGIWHRDK-IVVNVPHREI---------IPQYFKFWD  201 (347)
T ss_dssp             CC---------CEEEEEEEETTTTEEEEEEEE--E-----TTCEEEEETTE-EEEEEECCCS---------SCCSSCCEE
T ss_pred             eeecCcccccCccceEEEEECCCCeEEeeecC--C-----CcccccCCCCe-EEEEEecccc---------ccccccccc
Confidence                         3477888 556 4 44432  1     35577899999 6665321000         00001 347


Q ss_pred             EEEEeCCCCeeEEeeccccccceEEEcCCCCEEEEEEcC-------CCeEEEEE
Q 026118          134 LLKYDPSTNQTSLVLDGLYFANGVALSEDERFLVVCESW-------KFRCVKHF  180 (243)
Q Consensus       134 v~~~~~~~~~~~~~~~~~~~~~gi~~~~dg~~l~v~~~~-------~~~i~~~~  180 (243)
                      ||.++  +++.+.+... ....  .++|||++|++....       ...|+.++
T Consensus       202 l~~~d--~~~~~~l~~~-~~~~--~~spdg~~l~~~~~~~~~~~~~~~~l~~~d  250 (347)
T 2gop_A          202 IYIWE--DGKEEKMFEK-VSFY--AVDSDGERILLYGKPEKKYMSEHNKLYIYD  250 (347)
T ss_dssp             EEEEE--TTEEEEEEEE-ESEE--EEEECSSCEEEEECCSSSCCCSSCEEEEEC
T ss_pred             EEEeC--CCceEEeccC-ccee--eECCCCCEEEEEEccccCCccccceEEEEC
Confidence            99999  5777766544 2222  338999988766432       35788887

>3jro_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum, transport, membrane, mRNA transport; 4.00A {Saccharomyces cerevisiae}

Probab=98.07  E-value=0.0004  Score=62.41  Aligned_cols=182  Identities=14%  Similarity=0.140  Sum_probs=100.8

Q ss_pred             cccEEEcCC--Cc-EEEEeCCCcEEEEc-cCCce---eEecccCCccccceEEccC--CCEEEEEeCCCcEEEEe-cCC-
Q 026118           12 PEDVSVDGN--GV-LYTATGDGWIKRMH-PNGTW---EDWHQVGSQSLLGLTTTKE--NNVIIVCDSQQGLLKVS-EEG-   80 (243)
Q Consensus        12 p~~i~~d~~--g~-l~~~~~~~~i~~~~-~~g~~---~~~~~~~~~~~~~i~~~~~--g~l~~v~~~~~gl~~~~-~~g-   80 (243)
                      -.++++.++  +. |.++..++.|..++ .+++.   ..+... ..+..+++++++  +++++++...+.+..++ .++ 
T Consensus        56 V~~l~~s~~~~~~~l~s~s~Dg~I~vwd~~~~~~~~~~~~~~h-~~~V~~v~~sp~~~~~~l~sgs~dg~I~vwdl~~~~  134 (753)
T 3jro_A           56 VWRVDWAHPKFGTILASCSYDGKVLIWKEENGRWSQIAVHAVH-SASVNSVQWAPHEYGPLLLVASSDGKVSVVEFKENG  134 (753)
T ss_dssp             EEEEEECCTTSCSEEEEEETTSCEEEEEEETTEEEEEEEECCC-SSCEEEEEECCGGGCSEEEEEETTSEEEEEECCSSS
T ss_pred             eEEEEecCCCCCCEEEEEeCCCeEEEEECCCCcccccccccCC-CCCeEEEEECCCCCCCEEEEEeCCCcEEEEEeecCC
Confidence            346777765  65 55666889999998 34532   222212 223338899998  88866766555677777 433 


Q ss_pred             -cEEEEeccCCCcccCCccEEEcC-------------CCcEEEEeCCCCCCcccccccccccCCCceEEEEeCCCCe--e
Q 026118           81 -VTVLVSQFNGSQLRFANDVIEAS-------------DGSLYFTVSSTKFTPAEYYLDLVSGEPHGVLLKYDPSTNQ--T  144 (243)
Q Consensus        81 -~~~~~~~~~~~~~~~~~~l~~d~-------------~G~l~v~~~~~~~~~~~~~~~~~~~~~~g~v~~~~~~~~~--~  144 (243)
                       ......  .+ ....+.+++++|             ++.++++.+                 ..+.|..+|..++.  .
T Consensus       135 ~~~~~~~--~~-~~~~v~~l~~~p~~~~~~~~~~~~~d~~~l~sgs-----------------~dg~I~iwd~~~~~~~~  194 (753)
T 3jro_A          135 TTSPIII--DA-HAIGVNSASWAPATIEEDGEHNGTKESRKFVTGG-----------------ADNLVKIWKYNSDAQTY  194 (753)
T ss_dssp             CCCCEEE--EC-CSSCEEEEEECCCC---------CGGGCCEEEEE-----------------TTSCEEEEEEETTTTEE
T ss_pred             CcceeEe--ec-CCCceEEEEecCcccccccccccCCCCCEEEEEE-----------------CCCeEEEEeccCCcccc
Confidence             111111  11 123456777777             466555422                 23456666554332  1


Q ss_pred             EE---eeccccccceEEEcCC---CCEEEEEEcCCCeEEEEEeecCCCcceEEecc--CCCCCCCceEECCCCCEEEEE
Q 026118          145 SL---VLDGLYFANGVALSED---ERFLVVCESWKFRCVKHFLKVSGRTDREIFID--NLPGGPDNVNLARDGSFWISI  215 (243)
Q Consensus       145 ~~---~~~~~~~~~gi~~~~d---g~~l~v~~~~~~~i~~~~~~~~~~~~~~~~~~--~~~~~~~~i~~d~~G~lwv~~  215 (243)
                      ..   +.........++++|+   ++.++.+ ..++.|..|+..............  ........++++++|++.++.
T Consensus       195 ~~~~~~~~h~~~V~~l~~sp~~~~~~~l~s~-s~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~v~~l~~spdg~~l~s~  272 (753)
T 3jro_A          195 VLESTLEGHSDWVRDVAWSPTVLLRSYLASV-SQDRTCIIWTQDNEQGPWKKTLLKEEKFPDVLWRASWSLSGNVLALS  272 (753)
T ss_dssp             EEEEEECCCSSCEEEEEECCCCSSSEEEEEE-ESSSCEEEEEESSSSSCCBCCBSSSSCCSSCCCCEEECTTTCCEEEE
T ss_pred             eeeeeecCCCCcEEEEEeccCCCCCCEEEEE-ecCCEEEEecCCCCCCcceeEEeccCCCCCceEEEEEcCCCCEEEEE
Confidence            11   1222345678999999   7745444 567889999987532111111111  122345668888888744443

>2oaj_A Protein SNI1; WD40 repeat, beta propeller, endocytosis/exocytosis complex; 2.40A {Saccharomyces cerevisiae}

Probab=98.00  E-value=0.00086  Score=61.54  Aligned_cols=151  Identities=7%  Similarity=-0.047  Sum_probs=94.4

Q ss_pred             cccEEEcCCCc-EEEEeCCCcEEEEcc-CCceeEecccCCccccceEEccCCCEEEEEeCCCcEEEEe-cCC-cEEEEe-
Q 026118           12 PEDVSVDGNGV-LYTATGDGWIKRMHP-NGTWEDWHQVGSQSLLGLTTTKENNVIIVCDSQQGLLKVS-EEG-VTVLVS-   86 (243)
Q Consensus        12 p~~i~~d~~g~-l~~~~~~~~i~~~~~-~g~~~~~~~~~~~~~~~i~~~~~g~l~~v~~~~~gl~~~~-~~g-~~~~~~-   86 (243)
                      -.++++.+ |. |..+..++.|..++. +++............ .+++++++++++++...+.|..+| .++ ...+.. 
T Consensus        61 V~~l~fsp-g~~L~S~s~D~~v~lWd~~~~~~~~~~~~~~~V~-~v~~sp~g~~l~sgs~dg~V~lwd~~~~~~~~~~i~  138 (902)
T 2oaj_A           61 IKEMRFVK-GIYLVVINAKDTVYVLSLYSQKVLTTVFVPGKIT-SIDTDASLDWMLIGLQNGSMIVYDIDRDQLSSFKLD  138 (902)
T ss_dssp             EEEEEEET-TTEEEEEETTCEEEEEETTTCSEEEEEECSSCEE-EEECCTTCSEEEEEETTSCEEEEETTTTEEEEEEEC
T ss_pred             EEEEEEcC-CCEEEEEECcCeEEEEECCCCcEEEEEcCCCCEE-EEEECCCCCEEEEEcCCCcEEEEECCCCccccceec
Confidence            35688888 65 666668899999983 444322212223344 899999999877777666688888 555 322211 


Q ss_pred             ------ccCCCcccCCccEEEcCCC-cEEEEeCCCCCCcccccccccccCCCceEEEEeCCCCeeEEeeccc--------
Q 026118           87 ------QFNGSQLRFANDVIEASDG-SLYFTVSSTKFTPAEYYLDLVSGEPHGVLLKYDPSTNQTSLVLDGL--------  151 (243)
Q Consensus        87 ------~~~~~~~~~~~~l~~d~~G-~l~v~~~~~~~~~~~~~~~~~~~~~~g~v~~~~~~~~~~~~~~~~~--------  151 (243)
                            .........+.+++++|++ .+.++..                 ..+.| .+|..+++........        
T Consensus       139 ~~~~~~~~~~~h~~~V~sl~~sp~~~~~l~~g~-----------------~dg~v-lWd~~~~~~~~~~~~~~~~g~~~~  200 (902)
T 2oaj_A          139 NLQKSSFFPAARLSPIVSIQWNPRDIGTVLISY-----------------EYVTL-TYSLVENEIKQSFIYELPPFAPGG  200 (902)
T ss_dssp             CHHHHHTCSSSCCCCCCEEEEETTEEEEEEEEC-----------------SSCEE-EEETTTTEEEEEECCCBCTTCCCS
T ss_pred             cccccccccccCCCCeEEEEEccCCCCEEEEEe-----------------CCCcE-EEECCCCceEEEEecccCCcCCCc
Confidence                  0011122457789999964 4444422                 23567 8888777654432211        


Q ss_pred             -----------cccceEEEcCCCCEEEEEEcCCCeEEEEEeec
Q 026118          152 -----------YFANGVALSEDERFLVVCESWKFRCVKHFLKV  183 (243)
Q Consensus       152 -----------~~~~gi~~~~dg~~l~v~~~~~~~i~~~~~~~  183 (243)
                                 .....++|+|+|++|..+ ..++.|..||...
T Consensus       201 ~~~~~~~~~h~~~V~~v~fspdg~~lasg-s~Dg~i~lWd~~~  242 (902)
T 2oaj_A          201 DFSEKTNEKRTPKVIQSLYHPNSLHIITI-HEDNSLVFWDANS  242 (902)
T ss_dssp             TTCCCTTSCBCCCEEEEEECTTSSEEEEE-ETTCCEEEEETTT
T ss_pred             ccccccccccCCCeEEEEEcCCCCEEEEE-ECCCeEEEEECCC
Confidence                       346789999999955544 5678899999764

>2bkl_A Prolyl endopeptidase; mechanistic study, celiac sprue, hydrolase, protease; HET: ZAH MES; 1.5A {Myxococcus xanthus}

Probab=98.00  E-value=0.00029  Score=62.66  Aligned_cols=187  Identities=12%  Similarity=0.070  Sum_probs=100.2

Q ss_pred             cccEEEcCCCcE--EEEeCC----CcEEEEc-cCCcee-EecccCCccccceEEccCCCEEEEEeCCCc-----------
Q 026118           12 PEDVSVDGNGVL--YTATGD----GWIKRMH-PNGTWE-DWHQVGSQSLLGLTTTKENNVIIVCDSQQG-----------   72 (243)
Q Consensus        12 p~~i~~d~~g~l--~~~~~~----~~i~~~~-~~g~~~-~~~~~~~~~~~~i~~~~~g~l~~v~~~~~g-----------   72 (243)
                      -.++++.+||..  |..+..    ..|+.++ .+|+.. .-........ ++++++||+.|+.+.....           
T Consensus       123 ~~~~~~SPDG~~la~~~~~~G~~~~~i~v~dl~tg~~~~~~~~~~~~~~-~~~wspDg~~l~~~~~d~~~~~~~~~~~~~  201 (695)
T 2bkl_A          123 LGTWAVSWDGKKVAFAQKPNAADEAVLHVIDVDSGEWSKVDVIEGGKYA-TPKWTPDSKGFYYEWLPTDPSIKVDERPGY  201 (695)
T ss_dssp             EEEEEECTTSSEEEEEEEETTCSCCEEEEEETTTCCBCSSCCBSCCTTC-CCEECTTSSEEEEEECCCCTTSCGGGGGGG
T ss_pred             EEEEEECCCCCEEEEEECCCCCceEEEEEEECCCCCCcCCcccCccccc-ceEEecCCCEEEEEEecCCCCCccccCCCC
Confidence            446788899863  333322    4688888 455543 1111111113 7899999987565554332           


Q ss_pred             --EEEEe-cCC-c--EEEEeccCCCcccCCccEEEcCCCc-EEEEeCCCCCCcccccccccccCCCceEEEEeCCCCeeE
Q 026118           73 --LLKVS-EEG-V--TVLVSQFNGSQLRFANDVIEASDGS-LYFTVSSTKFTPAEYYLDLVSGEPHGVLLKYDPSTNQTS  145 (243)
Q Consensus        73 --l~~~~-~~g-~--~~~~~~~~~~~~~~~~~l~~d~~G~-l~v~~~~~~~~~~~~~~~~~~~~~~g~v~~~~~~~~~~~  145 (243)
                        |++++ .++ .  +.+......  .....++.+++||+ |.++...              ......||.++..+++++
T Consensus       202 ~~v~~~~l~t~~~~~~lv~~~~~~--~~~~~~~~~SpDG~~l~~~~~~--------------~~~~~~l~~~~~~~~~~~  265 (695)
T 2bkl_A          202 TTIRYHTLGTEPSKDTVVHERTGD--PTTFLQSDLSRDGKYLFVYILR--------------GWSENDVYWKRPGEKDFR  265 (695)
T ss_dssp             CEEEEEETTSCGGGCEEEECCCCC--TTCEEEEEECTTSCCEEEEEEE--------------TTTEEEEEEECTTCSSCE
T ss_pred             CEEEEEECCCCchhceEEEecCCC--CEEEEEEEECCCCCEEEEEEeC--------------CCCceEEEEEcCCCCceE
Confidence              88887 444 2  233221111  12344778999997 4443211              002347888887767777


Q ss_pred             EeeccccccceEEEcCCCCEEEEEEc---CCCeEEEEEeecCCCcceEEeccCC-CCCCCceEECCCCCEEEEEecC
Q 026118          146 LVLDGLYFANGVALSEDERFLVVCES---WKFRCVKHFLKVSGRTDREIFIDNL-PGGPDNVNLARDGSFWISIIKM  218 (243)
Q Consensus       146 ~~~~~~~~~~gi~~~~dg~~l~v~~~---~~~~i~~~~~~~~~~~~~~~~~~~~-~~~~~~i~~d~~G~lwv~~~~~  218 (243)
                      .+...........+ ++|+ +|+...   .+..|++++.++....+.+.+.... .....+++++ ++.|++.....
T Consensus       266 ~l~~~~~~~~~~~~-~~g~-l~~~s~~~~~~~~l~~~d~~~~~~~~~~~l~~~~~~~~l~~~~~~-~~~lv~~~~~d  339 (695)
T 2bkl_A          266 LLVKGVGAKYEVHA-WKDR-FYVLTDEGAPRQRVFEVDPAKPARASWKEIVPEDSSASLLSVSIV-GGHLSLEYLKD  339 (695)
T ss_dssp             EEEECSSCCEEEEE-ETTE-EEEEECTTCTTCEEEEEBTTBCSGGGCEEEECCCSSCEEEEEEEE-TTEEEEEEEET
T ss_pred             EeecCCCceEEEEe-cCCc-EEEEECCCCCCCEEEEEeCCCCCccCCeEEecCCCCCeEEEEEEE-CCEEEEEEEEC
Confidence            76544333344444 6787 777654   3578999987654322233332221 2223445555 45565555443

>3s25_A Hypothetical 7-bladed beta-propeller-like protein; structural genomics, joint center F structural genomics, JCSG; 1.88A {Eubacterium rectale}

Probab=98.00  E-value=0.00036  Score=55.67  Aligned_cols=122  Identities=13%  Similarity=0.171  Sum_probs=75.2

Q ss_pred             CcEEEEccCCceeEecccCCccccceEEccCCCEEEEEe----CCCcEEEEecCC--cEEEEeccCCCcccCCccEEEcC
Q 026118           30 GWIKRMHPNGTWEDWHQVGSQSLLGLTTTKENNVIIVCD----SQQGLLKVSEEG--VTVLVSQFNGSQLRFANDVIEAS  103 (243)
Q Consensus        30 ~~i~~~~~~g~~~~~~~~~~~~~~~i~~~~~g~l~~v~~----~~~gl~~~~~~g--~~~~~~~~~~~~~~~~~~l~~d~  103 (243)
                      ..|++++.+|.......   ... +..+.++|+.+|.++    ....|++++.+|  .+.+.....         ..+++
T Consensus        88 ~~Iy~i~~dg~~~~~l~---~~~-~~~~s~~g~~Iy~~~~~~~~~~~Iy~~~~dGs~~~~lt~~~~---------~~~~~  154 (302)
T 3s25_A           88 NSLCRIKRNGHGSTVLD---PDP-CIYASLIGNYIYYLHYDTQTATSLYRIRIDGEEKKKIKNHYL---------FTCNT  154 (302)
T ss_dssp             EEEEEEETTSCCCEEEE---CSC-EEEEEEETTEEEEEEESSSSCEEEEEEETTSCCCEEEESSCC---------CCSEE
T ss_pred             CeEEEEeCCCCcceEee---cCC-ccEEEEeCCEEEEEeecCCCCceEEEEECCCCCeEEEeCCCc---------eEeeE
Confidence            46888887665333222   112 445566677667776    234688888444  554443211         12355


Q ss_pred             CC-cEEEEeCCCCCCcccccccccccCCCceEEEEeCCCCeeEEeeccccccceEEEcCCCCEEEEEEcCC-CeEEEEEe
Q 026118          104 DG-SLYFTVSSTKFTPAEYYLDLVSGEPHGVLLKYDPSTNQTSLVLDGLYFANGVALSEDERFLVVCESWK-FRCVKHFL  181 (243)
Q Consensus       104 ~G-~l~v~~~~~~~~~~~~~~~~~~~~~~g~v~~~~~~~~~~~~~~~~~~~~~gi~~~~dg~~l~v~~~~~-~~i~~~~~  181 (243)
                      +| .||+++.+                 ...|++.+.+++..+++..+   +..+.++|++++||+++... ..|++.++
T Consensus       155 ~g~~iy~t~~g-----------------~~~Iy~~~l~g~~~~~l~~~---~~~~~~~P~g~~iy~t~~~~~~~I~~~~l  214 (302)
T 3s25_A          155 SDRYFYYNNPK-----------------NGQLYRYDTASQSEALFYDC---NCYKPVVLDDTNVYYMDVNRDNAIVHVNI  214 (302)
T ss_dssp             ETTEEEEECTT-----------------TCCEEEEETTTTEEEEEECS---CEEEEEEEETTEEEEEEGGGTTEEEEECS
T ss_pred             ECCEEEEEeCC-----------------CceEEEEECCCCCEEEEeCC---CccceeeecCCEEEEEEcCCCcEEEEEEC
Confidence            44 68888542                 34799999997776666543   22244668999999998643 58999988


Q ss_pred             ecC
Q 026118          182 KVS  184 (243)
Q Consensus       182 ~~~  184 (243)
                      ++.
T Consensus       215 dG~  217 (302)
T 3s25_A          215 NNP  217 (302)
T ss_dssp             SSC
T ss_pred             CCC
Confidence            763

>3vu4_A KMHSV2; beta-propeller fold, protein transport; 2.60A {Kluyveromyces marxianus} PDB: 4av9_A 4av8_A 4exv_A

Probab=98.00  E-value=0.0033  Score=50.93  Aligned_cols=197  Identities=8%  Similarity=-0.089  Sum_probs=98.6

Q ss_pred             CcccEEEcCCCcEEEEeCCCcEEEEccC-CceeEecccCCccccceEEccCCCEEEEEeCC-CcEEEEe-cCC-c-EEEE
Q 026118           11 HPEDVSVDGNGVLYTATGDGWIKRMHPN-GTWEDWHQVGSQSLLGLTTTKENNVIIVCDSQ-QGLLKVS-EEG-V-TVLV   85 (243)
Q Consensus        11 ~p~~i~~d~~g~l~~~~~~~~i~~~~~~-g~~~~~~~~~~~~~~~i~~~~~g~l~~v~~~~-~gl~~~~-~~g-~-~~~~   85 (243)
                      .-.++++.++|.++++..+.++..++.+ ++.... ....... .+.+.++++++.++... +.|..+| .++ . ..+.
T Consensus        21 ~V~~v~fs~dg~~la~g~~~~~~iw~~~~~~~~~~-~~~~~~~-~~~~~~~~~~~~~~~~~d~~v~iWd~~~~~~~~~~~   98 (355)
T 3vu4_A           21 PVTDYEFNQDQSCLILSTLKSFEIYNVHPVAHIMS-QEMRHLS-KVRMLHRTNYVAFVTGVKEVVHIWDDVKKQDVSRIK   98 (355)
T ss_dssp             CCCEEEECTTSSEEEEECSSEEEEEEETTEEEEEE-EECSCCC-EEEECTTSSEEEEECSSTTEEEEEETTTTEEEEEEE
T ss_pred             ceEEEEECCCCCEEEEEcCCEEEEEecCCcceeee-eecCCeE-EEEEcCCCCEEEEEECCccEEEEEECCCCcEEEEEE
Confidence            3457999999987665545567777632 222211 1111122 45666667764444433 3466677 556 2 2221


Q ss_pred             eccCCCcccCCccEEEcC-------CCcEEEEeCCCC-CCccccc----------ccccc--cCCCceEEEEeCCCCe--
Q 026118           86 SQFNGSQLRFANDVIEAS-------DGSLYFTVSSTK-FTPAEYY----------LDLVS--GEPHGVLLKYDPSTNQ--  143 (243)
Q Consensus        86 ~~~~~~~~~~~~~l~~d~-------~G~l~v~~~~~~-~~~~~~~----------~~~~~--~~~~g~v~~~~~~~~~--  143 (243)
                        ..    ..+.++.+++       ++.+.+-+.... -......          ..+..  +...+.|..+|..+++  
T Consensus        99 --~~----~~v~~v~~~~~~~~~~~~~~i~i~d~~~~~~~~~~~~~~~~~~~~s~~~la~~sg~~~g~v~iwd~~~~~~~  172 (355)
T 3vu4_A           99 --VD----APVKDLFLSREFIVVSYGDVISVFKFGNPWKRITDDIRFGGVCEFSNGLLVYSNEFNLGQIHITKLQSSGSA  172 (355)
T ss_dssp             --CS----SCEEEEEECSSEEEEEETTEEEEEESSTTCCBSSCCEEEEEEEEEETTEEEEEESSCTTCEEEEECCC----
T ss_pred             --CC----CceEEEEEcCCEEEEEEcCEEEEEECCCCceeeEEeccCCceEEEEccEEEEeCCCcCcEEEEEECCCCCcc
Confidence              11    1233344433       333333222110 0000000          00001  2345677778877544  


Q ss_pred             ---------------eEEeeccccccceEEEcCCCCEEEEEEcCCCe-EEEEEeecCCCcceEEeccC-CCCCCCceEEC
Q 026118          144 ---------------TSLVLDGLYFANGVALSEDERFLVVCESWKFR-CVKHFLKVSGRTDREIFIDN-LPGGPDNVNLA  206 (243)
Q Consensus       144 ---------------~~~~~~~~~~~~gi~~~~dg~~l~v~~~~~~~-i~~~~~~~~~~~~~~~~~~~-~~~~~~~i~~d  206 (243)
                                     ...+.........++|+|+|++|..+ ..++. |..+|.....  ....+... .......++++
T Consensus       173 ~~~~~~~~~~~~~p~~~~~~~h~~~v~~~~~s~~g~~l~s~-s~d~~~v~iwd~~~~~--~~~~~~~g~h~~~v~~~~~s  249 (355)
T 3vu4_A          173 TTQDQGVQQKAILGKGVLIKAHTNPIKMVRLNRKSDMVATC-SQDGTIIRVFKTEDGV--LVREFRRGLDRADVVDMKWS  249 (355)
T ss_dssp             --------------CCEEECCCSSCEEEEEECTTSSEEEEE-ETTCSEEEEEETTTCC--EEEEEECTTCCSCEEEEEEC
T ss_pred             ccccccccccccCcccEEEEccCCceEEEEECCCCCEEEEE-eCCCCEEEEEECCCCc--EEEEEEcCCCCCcEEEEEEC
Confidence                           23333334456789999999955544 56677 9999976432  22223211 23345668999


Q ss_pred             CCCCEEEEEecC
Q 026118          207 RDGSFWISIIKM  218 (243)
Q Consensus       207 ~~G~lwv~~~~~  218 (243)
                      ++|++.++....
T Consensus       250 ~~~~~l~s~s~d  261 (355)
T 3vu4_A          250 TDGSKLAVVSDK  261 (355)
T ss_dssp             TTSCEEEEEETT
T ss_pred             CCCCEEEEEECC
Confidence            999866655443

>1tl2_A L10, protein (tachylectin-2); animal lectin, horseshoe CRAB, N-acetylglucosamine, beta- propeller, sugar binding protein; HET: NDG; 2.00A {Tachypleus tridentatus} SCOP: b.67.1.1 PDB: 3kif_A* 3kih_A*

Probab=97.96  E-value=0.00067  Score=51.19  Aligned_cols=134  Identities=10%  Similarity=-0.022  Sum_probs=79.3

Q ss_pred             ceEEccCCCEEEEEeCCCcEEEEe-cC-------C-cEEEEeccCCCcccCCccEEEcCCCcEEEEeCCCCCCccccccc
Q 026118           54 GLTTTKENNVIIVCDSQQGLLKVS-EE-------G-VTVLVSQFNGSQLRFANDVIEASDGSLYFTVSSTKFTPAEYYLD  124 (243)
Q Consensus        54 ~i~~~~~g~l~~v~~~~~gl~~~~-~~-------g-~~~~~~~~~~~~~~~~~~l~~d~~G~l~v~~~~~~~~~~~~~~~  124 (243)
                      .|+++|+|.| |++ ....|++++ ++       + .+.+...    ....-..+.+|++|.||+++             
T Consensus        45 ~laf~P~G~L-YaV-~~G~Ly~~~~~t~~~~~W~~s~t~IG~~----Gw~~F~a~~fD~~G~LYav~-------------  105 (236)
T 1tl2_A           45 FLFLSPGGEL-YGV-LNDKIYKGTPPTHDNDNWMGRAKKIGNG----GWNQFQFLFFDPNGYLYAVS-------------  105 (236)
T ss_dssp             EEEECTTSCE-EEE-ETTEEEEESCCCSTTCCHHHHCEEEECS----CGGGCSEEEECTTSCEEEEE-------------
T ss_pred             eEEECCCccE-EEE-eCCeEEEECCCCCCcccccccccEeccc----ccccceEEEECCCCCEEEeC-------------
Confidence            7999999998 988 455699998 45       2 2333221    11224578999999999983             


Q ss_pred             ccccCCCceEEEEeCCCC-ee------EEee-ccccccceEEEcCCCCEEEEEEcCCCeEEEEEee-cCC---CcceEEe
Q 026118          125 LVSGEPHGVLLKYDPSTN-QT------SLVL-DGLYFANGVALSEDERFLVVCESWKFRCVKHFLK-VSG---RTDREIF  192 (243)
Q Consensus       125 ~~~~~~~g~v~~~~~~~~-~~------~~~~-~~~~~~~gi~~~~dg~~l~v~~~~~~~i~~~~~~-~~~---~~~~~~~  192 (243)
                            ++.|||+++-+. .-      ..+- .+......|.++|+|. ||...  ++.+++-..- +..   +...+.+
T Consensus       106 ------dG~iyr~~pP~~~~~~Wl~~a~~vg~~gw~~~~~lff~p~G~-Lyav~--dg~lyr~~~P~~~~~~wl~~~~~~  176 (236)
T 1tl2_A          106 ------KDKLYKASPPQSDTDNWIARATEVGSGGWSGFKFLFFHPNGY-LYAVH--GQQFYKALPPVSNQDNWLARATKI  176 (236)
T ss_dssp             ------TTEEEEESCCCSTTCCHHHHSEEEECSSGGGEEEEEECTTSC-EEEEE--TTEEEEECCCSSTTCCHHHHCEEE
T ss_pred             ------CCEEEEeCCCcCCCCceeccccEeccCCCCceEEEEECCCce-EEEEe--CCcEEecCCCCCCCccccccccee
Confidence                  258999998431 11      1111 1223346799999998 99887  5667663221 110   1111222


Q ss_pred             ccCCCCCCCceEECCCCCEEEEE
Q 026118          193 IDNLPGGPDNVNLARDGSFWISI  215 (243)
Q Consensus       193 ~~~~~~~~~~i~~d~~G~lwv~~  215 (243)
                      .......-.-+.++++|+||...
T Consensus       177 g~~g~~~yr~l~f~~~G~l~~v~  199 (236)
T 1tl2_A          177 GQGGWDTFKFLFFSSVGTLFGVQ  199 (236)
T ss_dssp             ESSSGGGEEEEEECTTSCEEEEE
T ss_pred             ccCCcceEEEEEECCCCcEEEEe
Confidence            11100111226688999998887

>3mmy_A MRNA export factor; mRNA export, nuclear protein; HET: MES; 1.65A {Homo sapiens}

Probab=97.94  E-value=0.0018  Score=51.79  Aligned_cols=95  Identities=8%  Similarity=-0.002  Sum_probs=58.4

Q ss_pred             CCcccEEEcCC---Cc-EEEEeCCCcEEEEcc-C-Ccee--EecccCCccccceEEccCCCEEEEEeCCCcEEEEe-cCC
Q 026118           10 NHPEDVSVDGN---GV-LYTATGDGWIKRMHP-N-GTWE--DWHQVGSQSLLGLTTTKENNVIIVCDSQQGLLKVS-EEG   80 (243)
Q Consensus        10 ~~p~~i~~d~~---g~-l~~~~~~~~i~~~~~-~-g~~~--~~~~~~~~~~~~i~~~~~g~l~~v~~~~~gl~~~~-~~g   80 (243)
                      ..-.++++.++   |. |.++..++.|..++. . +...  .+........ .+++++++++|+++..++.|..++ .++
T Consensus        40 ~~v~~~~~~~~~~~g~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~h~~~v~-~~~~~~~~~~l~s~~~dg~v~iwd~~~~  118 (368)
T 3mmy_A           40 DSIGCLSFSPPTLPGNFLIAGSWANDVRCWEVQDSGQTIPKAQQMHTGPVL-DVCWSDDGSKVFTASCDKTAKMWDLSSN  118 (368)
T ss_dssp             SCEEEEEECCTTSSSEEEEEEETTSEEEEEEECTTSCEEEEEEEECSSCEE-EEEECTTSSEEEEEETTSEEEEEETTTT
T ss_pred             CceEEEEEcCCCCCceEEEEECCCCcEEEEEcCCCCceeEEEeccccCCEE-EEEECcCCCEEEEEcCCCcEEEEEcCCC
Confidence            34567889887   44 556668888988883 2 4332  2222223334 899999999867666555577778 555


Q ss_pred             -cEEEEeccCCCcccCCccEEE--cCCCcEEEE
Q 026118           81 -VTVLVSQFNGSQLRFANDVIE--ASDGSLYFT  110 (243)
Q Consensus        81 -~~~~~~~~~~~~~~~~~~l~~--d~~G~l~v~  110 (243)
                       ...+...     ...+.++++  +++++++++
T Consensus       119 ~~~~~~~~-----~~~v~~~~~~~~~~~~~l~~  146 (368)
T 3mmy_A          119 QAIQIAQH-----DAPVKTIHWIKAPNYSCVMT  146 (368)
T ss_dssp             EEEEEEEC-----SSCEEEEEEEECSSCEEEEE
T ss_pred             Cceeeccc-----cCceEEEEEEeCCCCCEEEE
Confidence             3332211     134567777  777775555

>4aow_A Guanine nucleotide-binding protein subunit beta-2; receptor, WD-repeat, beta-propeller; 2.45A {Homo sapiens} PDB: 2zkq_a

Probab=97.93  E-value=0.0045  Score=49.05  Aligned_cols=183  Identities=10%  Similarity=0.035  Sum_probs=101.9

Q ss_pred             CcccEEEcCCCcE-EEEeCCCcEEEEccC-CceeEeccc-CCccccceEEccCCCEEEEEeCCCcEEEEec-CCcEEEEe
Q 026118           11 HPEDVSVDGNGVL-YTATGDGWIKRMHPN-GTWEDWHQV-GSQSLLGLTTTKENNVIIVCDSQQGLLKVSE-EGVTVLVS   86 (243)
Q Consensus        11 ~p~~i~~d~~g~l-~~~~~~~~i~~~~~~-g~~~~~~~~-~~~~~~~i~~~~~g~l~~v~~~~~gl~~~~~-~g~~~~~~   86 (243)
                      ...++++.++|.+ ..+..++.|..++.. ......... ..... .+.+.+++++++.+..++.+..++. ........
T Consensus        88 ~V~~~~~s~dg~~l~s~~~d~~i~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~l~s~s~d~~~~~~d~~~~~~~~~~  166 (340)
T 4aow_A           88 FVSDVVISSDGQFALSGSWDGTLRLWDLTTGTTTRRFVGHTKDVL-SVAFSSDNRQIVSGSRDKTIKLWNTLGVCKYTVQ  166 (340)
T ss_dssp             CEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEEEEECCSSCEE-EEEECTTSSCEEEEETTSCEEEECTTSCEEEEEC
T ss_pred             CEEEEEECCCCCEEEEEcccccceEEeecccceeeeecCCCCcee-EEEEeecCccceeecCCCeEEEEEeCCCceEEEE
Confidence            3456888888864 455578888888743 322222211 12223 5667788887466665555666663 33222221


Q ss_pred             ccCCCcccCCccEEEcCCC--cEEEEeCCCCCCcccccccccccCCCceEEEEeCCCCeeEEeecc-ccccceEEEcCCC
Q 026118           87 QFNGSQLRFANDVIEASDG--SLYFTVSSTKFTPAEYYLDLVSGEPHGVLLKYDPSTNQTSLVLDG-LYFANGVALSEDE  163 (243)
Q Consensus        87 ~~~~~~~~~~~~l~~d~~G--~l~v~~~~~~~~~~~~~~~~~~~~~~g~v~~~~~~~~~~~~~~~~-~~~~~gi~~~~dg  163 (243)
                       ..+ ....+..+++.+++  .++++.+                 ..+.|..+|..+++....... ......++++|++
T Consensus       167 -~~~-~~~~v~~~~~~~~~~~~~~~s~~-----------------~d~~i~i~d~~~~~~~~~~~~h~~~v~~~~~s~~~  227 (340)
T 4aow_A          167 -DES-HSEWVSCVRFSPNSSNPIIVSCG-----------------WDKLVKVWNLANCKLKTNHIGHTGYLNTVTVSPDG  227 (340)
T ss_dssp             -SSS-CSSCEEEEEECSCSSSCEEEEEE-----------------TTSCEEEEETTTTEEEEEECCCSSCEEEEEECTTS
T ss_pred             -ecc-ccCcccceEEccCCCCcEEEEEc-----------------CCCEEEEEECCCCceeeEecCCCCcEEEEEECCCC
Confidence             111 12334556666553  3555422                 234677888887766554332 3445789999999


Q ss_pred             CEEEEEEcCCCeEEEEEeecCCCcceEEeccCCCCCCCceEECCCCCEEEEEecC
Q 026118          164 RFLVVCESWKFRCVKHFLKVSGRTDREIFIDNLPGGPDNVNLARDGSFWISIIKM  218 (243)
Q Consensus       164 ~~l~v~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~i~~d~~G~lwv~~~~~  218 (243)
                      ++|+.+ ..++.|..|+....  .....+.  .......+++.+++.+..+..++
T Consensus       228 ~~l~s~-s~Dg~i~iwd~~~~--~~~~~~~--~~~~v~~~~~~~~~~~~~~~~d~  277 (340)
T 4aow_A          228 SLCASG-GKDGQAMLWDLNEG--KHLYTLD--GGDIINALCFSPNRYWLCAATGP  277 (340)
T ss_dssp             SEEEEE-ETTCEEEEEETTTT--EEEEEEE--CSSCEEEEEECSSSSEEEEEETT
T ss_pred             CEEEEE-eCCCeEEEEEeccC--ceeeeec--CCceEEeeecCCCCceeeccCCC
Confidence            955555 56788999987642  1112221  11223456667777666655443

>2j04_B YDR362CP, TAU91; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae}

Probab=97.92  E-value=0.0005  Score=59.18  Aligned_cols=150  Identities=7%  Similarity=-0.036  Sum_probs=91.7

Q ss_pred             cccEEEcCCCcEEEEeCCCcEEEEcc-CCc-e-eEecccCCccccce--EEccCC-CEEEEEeCCCcEEEEe-cCC--cE
Q 026118           12 PEDVSVDGNGVLYTATGDGWIKRMHP-NGT-W-EDWHQVGSQSLLGL--TTTKEN-NVIIVCDSQQGLLKVS-EEG--VT   82 (243)
Q Consensus        12 p~~i~~d~~g~l~~~~~~~~i~~~~~-~g~-~-~~~~~~~~~~~~~i--~~~~~g-~l~~v~~~~~gl~~~~-~~g--~~   82 (243)
                      ..++++.+++.|.++..++.|..+|. ++. . ..+... ..+..++  ++.++| ++|..+..++-+..+| .++  ..
T Consensus       269 v~sv~~s~~~~lasgs~DgtV~lWD~~~~~~~~~~~~~H-~~~V~sv~~~~s~~g~~~laS~S~D~tvklWD~~~~~~~~  347 (524)
T 2j04_B          269 ITTFDFLSPTTVVCGFKNGFVAEFDLTDPEVPSFYDQVH-DSYILSVSTAYSDFEDTVVSTVAVDGYFYIFNPKDIATTK  347 (524)
T ss_dssp             EEEEEESSSSEEEEEETTSEEEEEETTBCSSCSEEEECS-SSCEEEEEEECCTTSCCEEEEEETTSEEEEECGGGHHHHC
T ss_pred             EEEEEecCCCeEEEEeCCCEEEEEECCCCCCceEEeecc-cccEEEEEEEcCCCCCeEEEEeccCCeEEEEECCCCCccc
Confidence            44677777777888889999999994 332 2 122211 2233266  457777 7745555444466667 554  22


Q ss_pred             EEEeccCCCcccCCccEEEcCCCcEEEEeCCCCCCcccccccccccCCCceEEEEeCCCCee-EEeeccccccceEEEcC
Q 026118           83 VLVSQFNGSQLRFANDVIEASDGSLYFTVSSTKFTPAEYYLDLVSGEPHGVLLKYDPSTNQT-SLVLDGLYFANGVALSE  161 (243)
Q Consensus        83 ~~~~~~~~~~~~~~~~l~~d~~G~l~v~~~~~~~~~~~~~~~~~~~~~~g~v~~~~~~~~~~-~~~~~~~~~~~gi~~~~  161 (243)
                      .+.....   ...+.++++.|+|..+++.+.                 .+.|..+|..++.. ..+.......+.++|+|
T Consensus       348 ~~~~~~~---~~~v~~v~fsp~~~~l~s~~~-----------------d~tv~lwd~~~~~~~~~l~gH~~~V~sva~Sp  407 (524)
T 2j04_B          348 TTVSRFR---GSNLVPVVYCPQIYSYIYSDG-----------------ASSLRAVPSRAAFAVHPLVSRETTITAIGVSR  407 (524)
T ss_dssp             EEEEECS---CCSCCCEEEETTTTEEEEECS-----------------SSEEEEEETTCTTCCEEEEECSSCEEEEECCS
T ss_pred             ccccccc---cCcccceEeCCCcCeEEEeCC-----------------CCcEEEEECcccccceeeecCCCceEEEEeCC
Confidence            3222111   113567899999988776432                 23566777765543 33344445678899999


Q ss_pred             CCCEEEEEEcCCCeEEEEEeec
Q 026118          162 DERFLVVCESWKFRCVKHFLKV  183 (243)
Q Consensus       162 dg~~l~v~~~~~~~i~~~~~~~  183 (243)
                      +|+.| ++...++.|..+++..
T Consensus       408 ~g~~l-~Sgs~Dgtv~lwd~~~  428 (524)
T 2j04_B          408 LHPMV-LAGSADGSLIITNAAR  428 (524)
T ss_dssp             SCCBC-EEEETTTEEECCBSCS
T ss_pred             CCCeE-EEEECCCEEEEEechH
Confidence            99955 4556778898888654

>4a5s_A Dipeptidyl peptidase 4 soluble form; hydrolase, type 2 diabetes, novartis compound NVP-BIV988; HET: N7F NAG MAN; 1.62A {Homo sapiens} PDB: 2qjr_A* 3f8s_A* 2qt9_A* 2qtb_A* 2rip_A* 1tk3_A* 1n1m_A* 1nu8_A* 1rwq_A* 1nu6_A* 1tkr_A* 1w1i_A* 2ajl_I* 2bgn_A* 2bub_A* 2ogz_A* 2ole_A* 2oqi_A* 3bjm_A* 3eio_A* ...

Probab=97.92  E-value=0.00072  Score=60.55  Aligned_cols=134  Identities=7%  Similarity=-0.059  Sum_probs=79.3

Q ss_pred             cccEEEcCCCcEEEEeCCCcEEEEc-cCCceeEecccCC-ccc----cceEEccCCCEEEEEeCC---------CcEEEE
Q 026118           12 PEDVSVDGNGVLYTATGDGWIKRMH-PNGTWEDWHQVGS-QSL----LGLTTTKENNVIIVCDSQ---------QGLLKV   76 (243)
Q Consensus        12 p~~i~~d~~g~l~~~~~~~~i~~~~-~~g~~~~~~~~~~-~~~----~~i~~~~~g~l~~v~~~~---------~gl~~~   76 (243)
                      -.++.+.++|.++... ++.|+.++ .+++......... ...    .++.++|||+.+.++...         ..++.+
T Consensus        19 ~~~~~w~~dg~~~~~~-~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Spdg~~l~~~~~~~~~~r~~~~~~~~~~   97 (740)
T 4a5s_A           19 LYSLRWISDHEYLYKQ-ENNILVFNAEYGNSSVFLENSTFDEFGHSINDYSISPDGQFILLEYNYVKQWRHSYTASYDIY   97 (740)
T ss_dssp             CCCEEECSSSEEEEEE-TTEEEEEETTTCCEEEEECTTTTTTCCSCCCEEEECTTSSEEEEEEEEEECSSSCEEEEEEEE
T ss_pred             ccccEECCCCcEEEEc-CCcEEEEECCCCceEEEEechhhhhhcccccceEECCCCCEEEEEECCeeeEEEccceEEEEE
Confidence            4468888999766555 78899998 4555443322111 111    036789999974554421         235677


Q ss_pred             e-cCC-cEEEEeccCCCcccCCccEEEcCCCc-EEEEeCCCCCCcccccccccccCCCceEEEEeCCCCeeEEeeccc--
Q 026118           77 S-EEG-VTVLVSQFNGSQLRFANDVIEASDGS-LYFTVSSTKFTPAEYYLDLVSGEPHGVLLKYDPSTNQTSLVLDGL--  151 (243)
Q Consensus        77 ~-~~g-~~~~~~~~~~~~~~~~~~l~~d~~G~-l~v~~~~~~~~~~~~~~~~~~~~~~g~v~~~~~~~~~~~~~~~~~--  151 (243)
                      | .++ .+.+..    . ......++++|||+ |.++.                   .+.||..+.++++.+++..+.  
T Consensus        98 d~~~~~~~~l~~----~-~~~~~~~~~SPdG~~la~~~-------------------~~~i~~~~~~~~~~~~lt~~g~~  153 (740)
T 4a5s_A           98 DLNKRQLITEER----I-PNNTQWVTWSPVGHKLAYVW-------------------NNDIYVKIEPNLPSYRITWTGKE  153 (740)
T ss_dssp             ETTTTEECCSSC----C-CTTEEEEEECSSTTCEEEEE-------------------TTEEEEESSTTSCCEECCSCCBT
T ss_pred             ECCCCcEEEccc----C-CCcceeeEECCCCCEEEEEE-------------------CCeEEEEECCCCceEEEcCCCCc
Confidence            7 555 332211    1 12345678999997 44441                   246888888877766653221  


Q ss_pred             -----------------cccceEEEcCCCCEEEEEE
Q 026118          152 -----------------YFANGVALSEDERFLVVCE  170 (243)
Q Consensus       152 -----------------~~~~gi~~~~dg~~l~v~~  170 (243)
                                       ....+++|||||+.|....
T Consensus       154 ~~~~~g~~~~v~~ee~~~~~~~~~wSpDg~~la~~~  189 (740)
T 4a5s_A          154 DIIYNGITDWVYEEEVFSAYSALWWSPNGTFLAYAQ  189 (740)
T ss_dssp             TTEEESBCCHHHHHHTSSSSBCEEECTTSSEEEEEE
T ss_pred             cceecCcccccccchhcCCCcceEECCCCCEEEEEE
Confidence                             1123589999999776653

>4gga_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; 2.04A {Homo sapiens} PDB: 4ggd_A

Probab=97.92  E-value=0.0012  Score=54.80  Aligned_cols=154  Identities=9%  Similarity=-0.020  Sum_probs=88.6

Q ss_pred             ceEEccCCCEEEEEeCCCcEEEEe-cCC-c--EEEEeccCCCcccCCccEEEcCCC-cEEEEeCCCCCCccccccccccc
Q 026118           54 GLTTTKENNVIIVCDSQQGLLKVS-EEG-V--TVLVSQFNGSQLRFANDVIEASDG-SLYFTVSSTKFTPAEYYLDLVSG  128 (243)
Q Consensus        54 ~i~~~~~g~l~~v~~~~~gl~~~~-~~g-~--~~~~~~~~~~~~~~~~~l~~d~~G-~l~v~~~~~~~~~~~~~~~~~~~  128 (243)
                      .+.+.++|+++..+...+.+..++ ..+ .  ..+... . .....+..+++.+.+ ++.++..               +
T Consensus       235 ~~~~~~~g~~l~s~~~D~~v~i~~~~~~~~~~~~~~~~-~-~~~~~V~~~~~~p~~~~~la~~~---------------g  297 (420)
T 4gga_A          235 GLRWAPDGRHLASGGNDNLVNVWPSAPGEGGWVPLQTF-T-QHQGAVKAVAWCPWQSNVLATGG---------------G  297 (420)
T ss_dssp             EEEECTTSSEEEEEETTSCEEEEESSCCSSCSCCSEEE-C-CCSSCEEEEEECTTCTTEEEEEE---------------C
T ss_pred             eeeecCCCCeeeeeeccccceEEeeccccccceeeeee-c-ccCCceeeeeeCCCcccEEEEEe---------------e
Confidence            566777888745555444555666 333 1  111111 1 112345567777754 4544321               1


Q ss_pred             CCCceEEEEeCCCCeeEEeeccccccceEEEcCCCCEEEEEE-cCCCeEEEEEeecCCCcceEEeccCCCCCCCceEECC
Q 026118          129 EPHGVLLKYDPSTNQTSLVLDGLYFANGVALSEDERFLVVCE-SWKFRCVKHFLKVSGRTDREIFIDNLPGGPDNVNLAR  207 (243)
Q Consensus       129 ~~~g~v~~~~~~~~~~~~~~~~~~~~~gi~~~~dg~~l~v~~-~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~i~~d~  207 (243)
                      ...+.|..+|..+++.............+.++++++.++++. ..++.|..|+....  .....+. .-.+....+++++
T Consensus       298 s~D~~I~iwd~~t~~~~~~~~~~~~v~~~~~~~~~~~lv~~sg~~d~~I~iwd~~~~--~~v~~l~-gH~~~V~~l~~sp  374 (420)
T 4gga_A          298 TSDRHIRIWNVCSGACLSAVDAHSQVCSILWSPHYKELISGHGFAQNQLVIWKYPTM--AKVAELK-GHTSRVLSLTMSP  374 (420)
T ss_dssp             TTTCEEEEEETTTTEEEEEEECSSCEEEEEEETTTTEEEEEECTTTCCEEEEETTTC--CEEEEEC-CCSSCEEEEEECT
T ss_pred             cCCCEEEEEeCCccccceeeccccceeeeeecCCCCeEEEEEecCCCEEEEEECCCC--cEEEEEc-CCCCCEEEEEEcC
Confidence            234578888988887766555556677889999999777764 34678999987542  2222222 2223456689999


Q ss_pred             CCCEEEEEecCC-chhhhhhh
Q 026118          208 DGSFWISIIKMD-PKGIQALQ  227 (243)
Q Consensus       208 ~G~lwv~~~~~~-~~~~~~~~  227 (243)
                      +|++.++....+ ...++...
T Consensus       375 dg~~l~S~s~D~tvriWdv~~  395 (420)
T 4gga_A          375 DGATVASAAADETLRLWRCFE  395 (420)
T ss_dssp             TSSCEEEEETTTEEEEECCSC
T ss_pred             CCCEEEEEecCCeEEEEECCC
Confidence            998666554433 44454433

>1kb0_A Quinohemoprotein alcohol dehydrogenase; beta-propeller fold, cytochrome C, oxidoreductase; HET: TRO HEC PQQ; 1.44A {Comamonas testosteroni} SCOP: a.3.1.6 b.70.1.1

Probab=97.91  E-value=0.0017  Score=57.61  Aligned_cols=85  Identities=16%  Similarity=0.159  Sum_probs=51.0

Q ss_pred             CceEEEEeCCCCeeEEeeccccccceEEEcCCCCEEEEEEcCCCeEEEEEeecCCCcceEEeccCCCCCCCceEECCCCC
Q 026118          131 HGVLLKYDPSTNQTSLVLDGLYFANGVALSEDERFLVVCESWKFRCVKHFLKVSGRTDREIFIDNLPGGPDNVNLARDGS  210 (243)
Q Consensus       131 ~g~v~~~~~~~~~~~~~~~~~~~~~gi~~~~dg~~l~v~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~i~~d~~G~  210 (243)
                      .+.|+.+|+.+++...-........+..+..++..+|++ ..++.++.+|...+..-..........+.|  +....+|+
T Consensus       456 ~g~l~A~D~~tG~~~W~~~~~~~~~~g~~~~~g~~v~~g-~~dg~l~a~D~~tG~~lw~~~~~~~~~~~p--~~y~~~G~  532 (677)
T 1kb0_A          456 FGRLLAWDPVAQKAAWSVEHVSPWNGGTLTTAGNVVFQG-TADGRLVAYHAATGEKLWEAPTGTGVVAAP--STYMVDGR  532 (677)
T ss_dssp             EEEEEEEETTTTEEEEEEEESSSCCCCEEEETTTEEEEE-CTTSEEEEEETTTCCEEEEEECSSCCCSCC--EEEEETTE
T ss_pred             ccEEEEEeCCCCcEEeecCCCCCCcCcceEeCCCEEEEE-CCCCcEEEEECCCCceeeeeeCCCCcccCC--EEEEeCCE
Confidence            378999999999866433222223444555677768887 567899999976543222111111111122  55567889


Q ss_pred             EEEEEecC
Q 026118          211 FWISIIKM  218 (243)
Q Consensus       211 lwv~~~~~  218 (243)
                      +|++...+
T Consensus       533 ~~v~~~~G  540 (677)
T 1kb0_A          533 QYVSVAVG  540 (677)
T ss_dssp             EEEEEEEC
T ss_pred             EEEEEecc
Confidence            89887655

>3v7d_B Cell division control protein 4; WD 40 domain, phospho-peptide complex, E3 ubiquitin ligase, cell cycle, phospho binding protein, phosphorylation; HET: SEP; 2.31A {Saccharomyces cerevisiae} PDB: 1nex_B* 3mks_B*

Probab=97.91  E-value=0.0034  Score=52.40  Aligned_cols=173  Identities=10%  Similarity=0.048  Sum_probs=98.2

Q ss_pred             cCCC-cEEEEeCCCcEEEEcc-CCcee-EecccCCccccceEEccCCCEEEEEeCCCcEEEEe-cCC-cEEEEeccCCCc
Q 026118           18 DGNG-VLYTATGDGWIKRMHP-NGTWE-DWHQVGSQSLLGLTTTKENNVIIVCDSQQGLLKVS-EEG-VTVLVSQFNGSQ   92 (243)
Q Consensus        18 d~~g-~l~~~~~~~~i~~~~~-~g~~~-~~~~~~~~~~~~i~~~~~g~l~~v~~~~~gl~~~~-~~g-~~~~~~~~~~~~   92 (243)
                      .+++ .+.++..++.|..++. .++.. .+........ .+++++++++++++..++.|..++ .++ .....   .+ .
T Consensus       277 ~~~~~~l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~v~-~~~~~~~~~~l~sg~~dg~i~vwd~~~~~~~~~~---~~-h  351 (464)
T 3v7d_B          277 SGHGNIVVSGSYDNTLIVWDVAQMKCLYILSGHTDRIY-STIYDHERKRCISASMDTTIRIWDLENGELMYTL---QG-H  351 (464)
T ss_dssp             EEETTEEEEEETTSCEEEEETTTTEEEEEECCCSSCEE-EEEEETTTTEEEEEETTSCEEEEETTTTEEEEEE---CC-C
T ss_pred             cCCCCEEEEEeCCCeEEEEECCCCcEEEEecCCCCCEE-EEEEcCCCCEEEEEeCCCcEEEEECCCCcEEEEE---eC-C
Confidence            4445 4566668889999983 44433 2222222334 789999999867776656688888 666 22211   11 1


Q ss_pred             ccCCccEEEcCCCcEEEEeCCCCCCcccccccccccCCCceEEEEeCCCCeeEEeeccccccceEEEcCCCCEEEEEEcC
Q 026118           93 LRFANDVIEASDGSLYFTVSSTKFTPAEYYLDLVSGEPHGVLLKYDPSTNQTSLVLDGLYFANGVALSEDERFLVVCESW  172 (243)
Q Consensus        93 ~~~~~~l~~d~~G~l~v~~~~~~~~~~~~~~~~~~~~~~g~v~~~~~~~~~~~~~~~~~~~~~gi~~~~dg~~l~v~~~~  172 (243)
                      ...+.++.++  +...++.+                 ..+.|..+|..+++.............++++++++.+..+.  
T Consensus       352 ~~~v~~~~~~--~~~l~s~s-----------------~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~--  410 (464)
T 3v7d_B          352 TALVGLLRLS--DKFLVSAA-----------------ADGSIRGWDANDYSRKFSYHHTNLSAITTFYVSDNILVSGS--  410 (464)
T ss_dssp             SSCEEEEEEC--SSEEEEEE-----------------TTSEEEEEETTTCCEEEEEECTTCCCEEEEEECSSEEEEEE--
T ss_pred             CCcEEEEEEc--CCEEEEEe-----------------CCCcEEEEECCCCceeeeecCCCCccEEEEEeCCCEEEEec--
Confidence            2344566665  45554422                 24578888888665443333334456688999999555554  


Q ss_pred             CCeEEEEEeecCCCcceEEeccCCCCCCCceEECCCCCEEEEEecCC
Q 026118          173 KFRCVKHFLKVSGRTDREIFIDNLPGGPDNVNLARDGSFWISIIKMD  219 (243)
Q Consensus       173 ~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~i~~d~~G~lwv~~~~~~  219 (243)
                      ++.|..|+...+..-  ..+..........++++ +..+.++....+
T Consensus       411 dg~i~iwd~~~g~~~--~~~~~~~~~~v~~v~~~-~~~l~~~~~~~g  454 (464)
T 3v7d_B          411 ENQFNIYNLRSGKLV--HANILKDADQIWSVNFK-GKTLVAAVEKDG  454 (464)
T ss_dssp             TTEEEEEETTTCCEE--ESCTTTTCSEEEEEEEE-TTEEEEEEEETT
T ss_pred             CCeEEEEECCCCcEE--ehhhccCCCcEEEEEec-CCEEEEEEEeCC
Confidence            678999997653221  11111122234457775 334555555444

>4e54_B DNA damage-binding protein 2; beta barrel, double helix, DDB1:WD40 beta-barrel fold, DNA D DNA repair, HOST-virus interactions; HET: DNA 3DR; 2.85A {Homo sapiens} PDB: 3ei4_B*

Probab=97.90  E-value=0.00043  Score=57.78  Aligned_cols=185  Identities=11%  Similarity=-0.007  Sum_probs=96.9

Q ss_pred             cccEEEcCCCcEE-EEeCCCcEEEEccCCc-eeEecccCCccccceEEccCCC-EEEEEeCCCcEEEEe-cCC--cEEEE
Q 026118           12 PEDVSVDGNGVLY-TATGDGWIKRMHPNGT-WEDWHQVGSQSLLGLTTTKENN-VIIVCDSQQGLLKVS-EEG--VTVLV   85 (243)
Q Consensus        12 p~~i~~d~~g~l~-~~~~~~~i~~~~~~g~-~~~~~~~~~~~~~~i~~~~~g~-l~~v~~~~~gl~~~~-~~g--~~~~~   85 (243)
                      ..++++++++.+. ++..++.|..++.+++ +..+........ ++++++++. ++..+..++-|..+| .++  ...+.
T Consensus       212 ~~~~~~~~~~~~l~~g~~dg~i~~wd~~~~~~~~~~~h~~~v~-~v~~~p~~~~~~~s~s~d~~v~iwd~~~~~~~~~~~  290 (435)
T 4e54_B          212 FCSLDVSASSRMVVTGDNVGNVILLNMDGKELWNLRMHKKKVT-HVALNPCCDWFLATASVDQTVKIWDLRQVRGKASFL  290 (435)
T ss_dssp             CCCEEEETTTTEEEEECSSSBEEEEESSSCBCCCSBCCSSCEE-EEEECTTCSSEEEEEETTSBCCEEETTTCCSSSCCS
T ss_pred             EEEEEECCCCCEEEEEeCCCcEeeeccCcceeEEEecccceEE-eeeecCCCceEEEEecCcceeeEEecccccccceEE
Confidence            3468888888644 5568889999985543 222222122334 889998876 534444444566677 433  11111


Q ss_pred             eccCCCcccCCccEEEcCCCcEEEEeCCCCCCcccccccccccCCCceEEEEeCCCCeeEEeecc-------ccccceEE
Q 026118           86 SQFNGSQLRFANDVIEASDGSLYFTVSSTKFTPAEYYLDLVSGEPHGVLLKYDPSTNQTSLVLDG-------LYFANGVA  158 (243)
Q Consensus        86 ~~~~~~~~~~~~~l~~d~~G~l~v~~~~~~~~~~~~~~~~~~~~~~g~v~~~~~~~~~~~~~~~~-------~~~~~gi~  158 (243)
                      ..  ......+.+++++|+|++.++.+                 ..+.|..++..++........       ...+....
T Consensus       291 ~~--~~h~~~v~~~~~spdg~~l~s~~-----------------~D~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~  351 (435)
T 4e54_B          291 YS--LPHRHPVNAACFSPDGARLLTTD-----------------QKSEIRVYSASQWDCPLGLIPHPHRHFQHLTPIKAA  351 (435)
T ss_dssp             BC--CBCSSCEEECCBCTTSSEEEEEE-----------------SSSCEEEEESSSSSSEEEECCCCCCCCSSSCCCBCE
T ss_pred             Ee--eeccccccceeECCCCCeeEEEc-----------------CCCEEEEEECCCCccceEEecccccccccceeEEEE
Confidence            10  11123456788899998777642                 235677777765543322110       11123345


Q ss_pred             EcCCCCEEEEEEc-----------CCCeEEEEEeecCCCcceEEeccCCCCCCCce-EECCCCCEEEEEecC
Q 026118          159 LSEDERFLVVCES-----------WKFRCVKHFLKVSGRTDREIFIDNLPGGPDNV-NLARDGSFWISIIKM  218 (243)
Q Consensus       159 ~~~dg~~l~v~~~-----------~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~i-~~d~~G~lwv~~~~~  218 (243)
                      +++++..+.++..           ..+.|..|+...+..  ...+..........+ ++.++|++.++..++
T Consensus       352 ~~~~~~~~~~~~~~d~~~~~~~~~~~~~i~iwd~~~g~~--~~~l~~~~~~~v~s~~~fspdg~~lasg~d~  421 (435)
T 4e54_B          352 WHPRYNLIVVGRYPDPNFKSCTPYELRTIDVFDGNSGKM--MCQLYDPESSGISSLNEFNPMGDTLASAMGY  421 (435)
T ss_dssp             ECSSSSCEEEECCCCTTSCCSSTTCCCCEEEECSSSCCE--EEEECCSSCCCCCCEEEECTTSSCEEEECSS
T ss_pred             EcCCCCEEEEEEcCCCCeEEEEecCCCEEEEEECCCCcE--EEEEeCCCCCcEEEEEEECCCCCEEEEEcCC
Confidence            6666664444422           224577776554211  112211111222333 688999877765543

>4a11_B DNA excision repair protein ERCC-8; DNA binding protein, DNA damage repair; HET: DNA; 3.31A {Homo sapiens}

Probab=97.89  E-value=0.0013  Score=53.48  Aligned_cols=155  Identities=12%  Similarity=0.041  Sum_probs=88.5

Q ss_pred             CcccEEEcCCCc--EEEEeCCCcEEEEcc-CC--ceeEec--------------ccCCccccceEEccCCCEEEEEeCCC
Q 026118           11 HPEDVSVDGNGV--LYTATGDGWIKRMHP-NG--TWEDWH--------------QVGSQSLLGLTTTKENNVIIVCDSQQ   71 (243)
Q Consensus        11 ~p~~i~~d~~g~--l~~~~~~~~i~~~~~-~g--~~~~~~--------------~~~~~~~~~i~~~~~g~l~~v~~~~~   71 (243)
                      ...++++.+++.  +.++..++.|..++. .+  ....+.              .....+..+++++++|++++++...+
T Consensus       188 ~v~~~~~~~~~~~ll~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg  267 (408)
T 4a11_B          188 EILAVSWSPRYDYILATASADSRVKLWDVRRASGCLITLDQHNGKKSQAVESANTAHNGKVNGLCFTSDGLHLLTVGTDN  267 (408)
T ss_dssp             CEEEEEECSSCTTEEEEEETTSCEEEEETTCSSCCSEECCTTTTCSCCCTTTSSCSCSSCEEEEEECTTSSEEEEEETTS
T ss_pred             cEEEEEECCCCCcEEEEEcCCCcEEEEECCCCCcccccccccccccceeeccccccccCceeEEEEcCCCCEEEEecCCC
Confidence            345788888875  456668888999983 22  222210              01112222789999999867776656


Q ss_pred             cEEEEe-cCC-cEE-EEeccCCCc-ccCCccEEEcCCCcEEEEeCCCCCCcccccccccccCCCceEEEEeCCCCeeEEe
Q 026118           72 GLLKVS-EEG-VTV-LVSQFNGSQ-LRFANDVIEASDGSLYFTVSSTKFTPAEYYLDLVSGEPHGVLLKYDPSTNQTSLV  147 (243)
Q Consensus        72 gl~~~~-~~g-~~~-~~~~~~~~~-~~~~~~l~~d~~G~l~v~~~~~~~~~~~~~~~~~~~~~~g~v~~~~~~~~~~~~~  147 (243)
                      .+..++ .++ ... ......... ......+..+..+.+.++.                  ..+.|..+|..+++....
T Consensus       268 ~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------------------~~~~i~v~d~~~~~~~~~  329 (408)
T 4a11_B          268 RMRLWNSSNGENTLVNYGKVCNNSKKGLKFTVSCGCSSEFVFVP------------------YGSTIAVYTVYSGEQITM  329 (408)
T ss_dssp             CEEEEETTTCCBCCCCCCCCCCCCSSCCCCEECCSSSSCEEEEE------------------ETTEEEEEETTTCCEEEE
T ss_pred             eEEEEECCCCccceeccccccccccccceeEEecCCCceEEEEe------------------cCCEEEEEECcCCcceee
Confidence            688888 555 211 111110000 1111111222334444442                  235788889887765544


Q ss_pred             ec-cccccceEEEcCCCCEEEEEEcCCCeEEEEEeecC
Q 026118          148 LD-GLYFANGVALSEDERFLVVCESWKFRCVKHFLKVS  184 (243)
Q Consensus       148 ~~-~~~~~~gi~~~~dg~~l~v~~~~~~~i~~~~~~~~  184 (243)
                      .. .......+++++++++|+.+ ..++.|..|++...
T Consensus       330 ~~~~~~~v~~~~~s~~~~~l~s~-~~dg~i~iw~~~~~  366 (408)
T 4a11_B          330 LKGHYKTVDCCVFQSNFQELYSG-SRDCNILAWVPSLY  366 (408)
T ss_dssp             ECCCSSCEEEEEEETTTTEEEEE-ETTSCEEEEEECC-
T ss_pred             eccCCCeEEEEEEcCCCCEEEEE-CCCCeEEEEeCCCC
Confidence            33 33456789999999966655 56788999998753

>2xbg_A YCF48-like protein; photosynthesis, photosystem II, beta-propeller, assembly FAC; 1.50A {Thermosynechococcus elongatus}

Probab=97.87  E-value=0.0049  Score=49.50  Aligned_cols=181  Identities=13%  Similarity=0.117  Sum_probs=98.5

Q ss_pred             CcccEEEcCCCcEEEEeCCCcEEEEccCC-ceeEecccC---CccccceEEccCCCEEEEEeCCCcEEEEecCC--cEEE
Q 026118           11 HPEDVSVDGNGVLYTATGDGWIKRMHPNG-TWEDWHQVG---SQSLLGLTTTKENNVIIVCDSQQGLLKVSEEG--VTVL   84 (243)
Q Consensus        11 ~p~~i~~d~~g~l~~~~~~~~i~~~~~~g-~~~~~~~~~---~~~~~~i~~~~~g~l~~v~~~~~gl~~~~~~g--~~~~   84 (243)
                      ...+|++.+++.+|+....+.|++-...| +++......   ..+..+|++++ +++ |++.....|++-.+.|  .+.+
T Consensus        37 ~~~~v~~~~~~~~~~~G~~g~i~~s~DgG~tW~~~~~~~~~~~~~~~~i~~~~-~~~-~~~g~~g~i~~S~DgG~tW~~~  114 (327)
T 2xbg_A           37 TILDMSFIDRHHGWLVGVNATLMETRDGGQTWEPRTLVLDHSDYRFNSVSFQG-NEG-WIVGEPPIMLHTTDGGQSWSQI  114 (327)
T ss_dssp             CEEEEEESSSSCEEEEETTTEEEEESSTTSSCEECCCCCSCCCCEEEEEEEET-TEE-EEEEETTEEEEESSTTSSCEEC
T ss_pred             cEEEEEECCCCcEEEEcCCCeEEEeCCCCCCCeECCCCCCCCCccEEEEEecC-CeE-EEEECCCeEEEECCCCCCceEC
Confidence            44567777777888766667787765334 455443211   22333788875 566 7775444455544444  4433


Q ss_pred             EeccCCCcccCCccEEEcCCCcEEEEeCCCCCCcccccccccccCCCceEEEEeCCCCeeEEeecc-ccccceEEEcCCC
Q 026118           85 VSQFNGSQLRFANDVIEASDGSLYFTVSSTKFTPAEYYLDLVSGEPHGVLLKYDPSTNQTSLVLDG-LYFANGVALSEDE  163 (243)
Q Consensus        85 ~~~~~~~~~~~~~~l~~d~~G~l~v~~~~~~~~~~~~~~~~~~~~~~g~v~~~~~~~~~~~~~~~~-~~~~~gi~~~~dg  163 (243)
                      ..... .+ ..+.+|++.+++++|++..                  .+.||+-.-.+..++.+... .....++++++++
T Consensus       115 ~~~~~-~~-~~~~~i~~~~~~~~~~~~~------------------~g~v~~S~DgG~tW~~~~~~~~~~~~~~~~~~~~  174 (327)
T 2xbg_A          115 PLDPK-LP-GSPRLIKALGNGSAEMITN------------------VGAIYRTKDSGKNWQALVQEAIGVMRNLNRSPSG  174 (327)
T ss_dssp             CCCTT-CS-SCEEEEEEEETTEEEEEET------------------TCCEEEESSTTSSEEEEECSCCCCEEEEEECTTS
T ss_pred             ccccC-CC-CCeEEEEEECCCCEEEEeC------------------CccEEEEcCCCCCCEEeecCCCcceEEEEEcCCC
Confidence            21110 01 1245677777788888742                  24677755444456555432 2234678888888


Q ss_pred             CEEEEEEcCCCeEEEEEeecCCCcceEEeccCCCCCCCceEECCCCCEEEEEec
Q 026118          164 RFLVVCESWKFRCVKHFLKVSGRTDREIFIDNLPGGPDNVNLARDGSFWISIIK  217 (243)
Q Consensus       164 ~~l~v~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~i~~d~~G~lwv~~~~  217 (243)
                      + +|+... .+.+++-. +++. ...+.+..........++++++|++|++...
T Consensus       175 ~-~~~~g~-~G~~~~S~-d~gG-~tW~~~~~~~~~~~~~~~~~~~g~~~~~~~~  224 (327)
T 2xbg_A          175 E-YVAVSS-RGSFYSTW-EPGQ-TAWEPHNRTTSRRLHNMGFTPDGRLWMIVNG  224 (327)
T ss_dssp             C-EEEEET-TSSEEEEE-CTTC-SSCEEEECCSSSCEEEEEECTTSCEEEEETT
T ss_pred             c-EEEEEC-CCcEEEEe-CCCC-CceeECCCCCCCccceeEECCCCCEEEEeCC
Confidence            7 555543 45676643 2111 2222222122223455777888888887643

>3bg1_A Protein SEC13 homolog; NPC, transport, WD repeat, autocatalytic cleavage, mRNA transport, nuclear pore complex, nucleus, phosphoprotein; 3.00A {Homo sapiens} PDB: 3bg0_A

Probab=97.86  E-value=0.0016  Score=51.79  Aligned_cols=151  Identities=16%  Similarity=0.078  Sum_probs=83.9

Q ss_pred             cccEEEcCCCcEE-EEeCCCcEEEEc-cCCce---eEecccCCccccceEEcc--CCCEEEEEeCCCcEEEEe-cCC-cE
Q 026118           12 PEDVSVDGNGVLY-TATGDGWIKRMH-PNGTW---EDWHQVGSQSLLGLTTTK--ENNVIIVCDSQQGLLKVS-EEG-VT   82 (243)
Q Consensus        12 p~~i~~d~~g~l~-~~~~~~~i~~~~-~~g~~---~~~~~~~~~~~~~i~~~~--~g~l~~v~~~~~gl~~~~-~~g-~~   82 (243)
                      -.+++++++|.+. .+..++.|..++ .+++.   ..+........ .+++.+  ++++|..+..++.+..++ .++ ..
T Consensus        16 V~~v~~s~~g~~lasgs~D~~v~lwd~~~~~~~~~~~l~gH~~~V~-~v~~~~~~~~~~l~s~s~D~~v~iWd~~~~~~~   94 (316)
T 3bg1_A           16 IHDAQMDYYGTRLATCSSDRSVKIFDVRNGGQILIADLRGHEGPVW-QVAWAHPMYGNILASCSYDRKVIIWREENGTWE   94 (316)
T ss_dssp             EEEEEECGGGCEEEEEETTTEEEEEEEETTEEEEEEEEECCSSCEE-EEEECCGGGSSCEEEEETTSCEEEECCSSSCCC
T ss_pred             EEEeeEcCCCCEEEEEeCCCeEEEEEecCCCcEEEEEEcCCCccEE-EEEeCCCCCCCEEEEEECCCEEEEEECCCCcce
Confidence            4568899888654 555888898888 34432   12221112233 788864  477646666666677777 555 32


Q ss_pred             EEEeccCCCcccCCccEEEcCC--CcEEEEeCCCCCCcccccccccccCCCceEEEEeCCCC-eeEEe--e-ccccccce
Q 026118           83 VLVSQFNGSQLRFANDVIEASD--GSLYFTVSSTKFTPAEYYLDLVSGEPHGVLLKYDPSTN-QTSLV--L-DGLYFANG  156 (243)
Q Consensus        83 ~~~~~~~~~~~~~~~~l~~d~~--G~l~v~~~~~~~~~~~~~~~~~~~~~~g~v~~~~~~~~-~~~~~--~-~~~~~~~g  156 (243)
                      .... ..+ ....+.++++.|+  |.++++.+.                 .+.|..++..++ .....  . ......+.
T Consensus        95 ~~~~-~~~-h~~~V~~v~~~p~~~g~~lasgs~-----------------D~~i~lwd~~~~~~~~~~~~~~~h~~~v~~  155 (316)
T 3bg1_A           95 KSHE-HAG-HDSSVNSVCWAPHDYGLILACGSS-----------------DGAISLLTYTGEGQWEVKKINNAHTIGCNA  155 (316)
T ss_dssp             EEEE-ECC-CSSCCCEEEECCTTTCSCEEEECS-----------------SSCEEEEEECSSSCEEECCBTTSSSSCBCC
T ss_pred             EEEE-ccC-CCCceEEEEECCCCCCcEEEEEcC-----------------CCCEEEEecCCCCCcceeeeeccccCCcce
Confidence            2221 111 1235778899987  666665322                 244555555433 22211  1 11223456


Q ss_pred             EEEcCC-----------------CCEEEEEEcCCCeEEEEEeec
Q 026118          157 VALSED-----------------ERFLVVCESWKFRCVKHFLKV  183 (243)
Q Consensus       157 i~~~~d-----------------g~~l~v~~~~~~~i~~~~~~~  183 (243)
                      ++++|+                 ++ ++++...++.|..++...
T Consensus       156 ~~~~~~~~~~~~~~~~~~~~~~~~~-~l~sgs~D~~v~lWd~~~  198 (316)
T 3bg1_A          156 VSWAPAVVPGSLIDHPSGQKPNYIK-RFASGGCDNLIKLWKEEE  198 (316)
T ss_dssp             CEECCCCCC------CCSCCCCCCC-BEECCBTTSBCCEEEECT
T ss_pred             EEEccccCCccccccccccCccccc-eEEEecCCCeEEEEEeCC
Confidence            777776                 34 445545667888888753

>3c5m_A Oligogalacturonate lyase; blade-shaped beta-propeller, structural genomics, PSI-2, protein structure initiative; 2.60A {Vibrio parahaemolyticus rimd 2210633}

Probab=97.85  E-value=0.0014  Score=53.38  Aligned_cols=137  Identities=15%  Similarity=0.065  Sum_probs=76.5

Q ss_pred             CCcEEEEc-cCCceeEecccCCccccceEEcc-CCC-EEEEEeCC-----CcEEEEe-cCC-cEEEEeccCCCcccCCcc
Q 026118           29 DGWIKRMH-PNGTWEDWHQVGSQSLLGLTTTK-ENN-VIIVCDSQ-----QGLLKVS-EEG-VTVLVSQFNGSQLRFAND   98 (243)
Q Consensus        29 ~~~i~~~~-~~g~~~~~~~~~~~~~~~i~~~~-~g~-l~~v~~~~-----~gl~~~~-~~g-~~~~~~~~~~~~~~~~~~   98 (243)
                      ...|+.++ ..++............ .+.+++ +|+ ++|+....     ..|+.++ ..+ .+.+..   ......+..
T Consensus       167 ~~~l~~~d~~~g~~~~~~~~~~~~~-~~~~sp~dg~~l~~~~~~~~~~~~~~l~~~d~~~~~~~~l~~---~~~~~~~~~  242 (396)
T 3c5m_A          167 TCRLIKVDIETGELEVIHQDTAWLG-HPIYRPFDDSTVGFCHEGPHDLVDARMWLVNEDGSNVRKIKE---HAEGESCTH  242 (396)
T ss_dssp             CEEEEEEETTTCCEEEEEEESSCEE-EEEEETTEEEEEEEEECSCSSSCSCCCEEEETTSCCCEESSC---CCTTEEEEE
T ss_pred             cceEEEEECCCCcEEeeccCCcccc-cceECCCCCCEEEEEecCCCCCCCceEEEEECCCCceeEeec---cCCCccccc
Confidence            34677887 3455444432222233 678888 676 43443322     2588888 444 443321   111123556


Q ss_pred             EEEcCCCc-EEEEeCCCCCCcccccccccccCCCceEEEEeCCCCeeEEeeccccccceEEEcC-CCCEEEEEEc-----
Q 026118           99 VIEASDGS-LYFTVSSTKFTPAEYYLDLVSGEPHGVLLKYDPSTNQTSLVLDGLYFANGVALSE-DERFLVVCES-----  171 (243)
Q Consensus        99 l~~d~~G~-l~v~~~~~~~~~~~~~~~~~~~~~~g~v~~~~~~~~~~~~~~~~~~~~~gi~~~~-dg~~l~v~~~-----  171 (243)
                      ++++|+|+ |+++...             .......|+.+|.++++.+.+..... .. +++++ ||+.++++..     
T Consensus       243 ~~~spdg~~l~~~~~~-------------~~~~~~~l~~~d~~~g~~~~l~~~~~-~~-~~~s~~dg~~l~~~~~~~p~~  307 (396)
T 3c5m_A          243 EFWIPDGSAMAYVSYF-------------KGQTDRVIYKANPETLENEEVMVMPP-CS-HLMSNFDGSLMVGDGCDAPVD  307 (396)
T ss_dssp             EEECTTSSCEEEEEEE-------------TTTCCEEEEEECTTTCCEEEEEECCS-EE-EEEECSSSSEEEEEECCC---
T ss_pred             eEECCCCCEEEEEecC-------------CCCccceEEEEECCCCCeEEeeeCCC-CC-CCccCCCCceEEEecCCccee
Confidence            78999997 5554211             00112359999998887766542211 22 78999 9995554321     


Q ss_pred             ----------CCCeEEEEEeecC
Q 026118          172 ----------WKFRCVKHFLKVS  184 (243)
Q Consensus       172 ----------~~~~i~~~~~~~~  184 (243)
                                ....|+.++..++
T Consensus       308 ~~~~~~~~~~~~~~i~~~d~~~~  330 (396)
T 3c5m_A          308 VADADSYNIENDPFLYVLNTKAK  330 (396)
T ss_dssp             -------CCCCCCEEEEEETTTT
T ss_pred             eccccccccCCCCcEEEEecccC
Confidence                      3467999987654

>3bg1_A Protein SEC13 homolog; NPC, transport, WD repeat, autocatalytic cleavage, mRNA transport, nuclear pore complex, nucleus, phosphoprotein; 3.00A {Homo sapiens} PDB: 3bg0_A

Probab=97.85  E-value=0.0034  Score=49.90  Aligned_cols=183  Identities=11%  Similarity=0.011  Sum_probs=93.0

Q ss_pred             cccEEEcC--CC-cEEEEeCCCcEEEEcc-CCcee---EecccCCccccceEEccC--CCEEEEEeCCCcEEEEe-cCC-
Q 026118           12 PEDVSVDG--NG-VLYTATGDGWIKRMHP-NGTWE---DWHQVGSQSLLGLTTTKE--NNVIIVCDSQQGLLKVS-EEG-   80 (243)
Q Consensus        12 p~~i~~d~--~g-~l~~~~~~~~i~~~~~-~g~~~---~~~~~~~~~~~~i~~~~~--g~l~~v~~~~~gl~~~~-~~g-   80 (243)
                      -.++++.+  +| .|..+..++.|..++. +++..   .+........ +++++++  |.+|..+..++.+..++ ..+ 
T Consensus        60 V~~v~~~~~~~~~~l~s~s~D~~v~iWd~~~~~~~~~~~~~~h~~~V~-~v~~~p~~~g~~lasgs~D~~i~lwd~~~~~  138 (316)
T 3bg1_A           60 VWQVAWAHPMYGNILASCSYDRKVIIWREENGTWEKSHEHAGHDSSVN-SVCWAPHDYGLILACGSSDGAISLLTYTGEG  138 (316)
T ss_dssp             EEEEEECCGGGSSCEEEEETTSCEEEECCSSSCCCEEEEECCCSSCCC-EEEECCTTTCSCEEEECSSSCEEEEEECSSS
T ss_pred             EEEEEeCCCCCCCEEEEEECCCEEEEEECCCCcceEEEEccCCCCceE-EEEECCCCCCcEEEEEcCCCCEEEEecCCCC
Confidence            34577754  35 4556668899999983 44322   2211112234 8899887  67645555445566666 433 


Q ss_pred             cEEEEeccCCCcccCCccEEEcCCC-----------------cEEEEeCCCCCCcccccccccccCCCceEEEEeCCCC-
Q 026118           81 VTVLVSQFNGSQLRFANDVIEASDG-----------------SLYFTVSSTKFTPAEYYLDLVSGEPHGVLLKYDPSTN-  142 (243)
Q Consensus        81 ~~~~~~~~~~~~~~~~~~l~~d~~G-----------------~l~v~~~~~~~~~~~~~~~~~~~~~~g~v~~~~~~~~-  142 (243)
                      .........+ ....+..+++.|++                 .++++.                 ...+.|..+|..+. 
T Consensus       139 ~~~~~~~~~~-h~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~sg-----------------s~D~~v~lWd~~~~~  200 (316)
T 3bg1_A          139 QWEVKKINNA-HTIGCNAVSWAPAVVPGSLIDHPSGQKPNYIKRFASG-----------------GCDNLIKLWKEEEDG  200 (316)
T ss_dssp             CEEECCBTTS-SSSCBCCCEECCCCCC------CCSCCCCCCCBEECC-----------------BTTSBCCEEEECTTS
T ss_pred             Ccceeeeecc-ccCCcceEEEccccCCccccccccccCccccceEEEe-----------------cCCCeEEEEEeCCCC
Confidence            2111111111 12234566776652                 333331                 12233433443322 


Q ss_pred             eeEE---eeccccccceEEEcCCC----CEEEEEEcCCCeEEEEEeecCCCc--ceEEeccCCCCCCCceEECCCCCEEE
Q 026118          143 QTSL---VLDGLYFANGVALSEDE----RFLVVCESWKFRCVKHFLKVSGRT--DREIFIDNLPGGPDNVNLARDGSFWI  213 (243)
Q Consensus       143 ~~~~---~~~~~~~~~gi~~~~dg----~~l~v~~~~~~~i~~~~~~~~~~~--~~~~~~~~~~~~~~~i~~d~~G~lwv  213 (243)
                      ..+.   +.........++|+|++    + ++++...++.|..++.......  ....+. ........+++.++|++.+
T Consensus       201 ~~~~~~~l~~h~~~V~~v~~sp~~~~~~~-~las~s~D~~v~iw~~~~~~~~~~~~~~~~-~~~~~v~~v~~sp~g~~la  278 (316)
T 3bg1_A          201 QWKEEQKLEAHSDWVRDVAWAPSIGLPTS-TIASCSQDGRVFIWTCDDASSNTWSPKLLH-KFNDVVWHVSWSITANILA  278 (316)
T ss_dssp             CEEEEECCBCCSSCEEEEECCCCSSCSCC-EEEEEETTCEEEEEECSSTTCCCCBCCEEE-ECSSCEEEEEECTTTCCEE
T ss_pred             ccceeeecccCCCceEEEEecCCCCCCCc-eEEEEcCCCeEEEEEccCccccchhhhhhh-cCCCcEEEEEEcCCCCEEE
Confidence            2222   22223446789999986    5 5555567789999987642111  111111 1123345678888887544


Q ss_pred             EE
Q 026118          214 SI  215 (243)
Q Consensus       214 ~~  215 (243)
                      +.
T Consensus       279 s~  280 (316)
T 3bg1_A          279 VS  280 (316)
T ss_dssp             EE
T ss_pred             EE
Confidence            43

>4a5s_A Dipeptidyl peptidase 4 soluble form; hydrolase, type 2 diabetes, novartis compound NVP-BIV988; HET: N7F NAG MAN; 1.62A {Homo sapiens} PDB: 2qjr_A* 3f8s_A* 2qt9_A* 2qtb_A* 2rip_A* 1tk3_A* 1n1m_A* 1nu8_A* 1rwq_A* 1nu6_A* 1tkr_A* 1w1i_A* 2ajl_I* 2bgn_A* 2bub_A* 2ogz_A* 2ole_A* 2oqi_A* 3bjm_A* 3eio_A* ...

Probab=97.85  E-value=0.0014  Score=58.75  Aligned_cols=166  Identities=8%  Similarity=0.003  Sum_probs=87.8

Q ss_pred             EEEcCCCc-EEEEeCC---------CcEEEEc-cCCceeEecccCCccccceEEccCCCEEEEEeCCCcEEEEe-cCC-c
Q 026118           15 VSVDGNGV-LYTATGD---------GWIKRMH-PNGTWEDWHQVGSQSLLGLTTTKENNVIIVCDSQQGLLKVS-EEG-V   81 (243)
Q Consensus        15 i~~d~~g~-l~~~~~~---------~~i~~~~-~~g~~~~~~~~~~~~~~~i~~~~~g~l~~v~~~~~gl~~~~-~~g-~   81 (243)
                      +++.+||. |.++..+         +.++.++ .+++...+........ ..+++|||+.+..+ ....|+.++ .++ .
T Consensus        67 ~~~Spdg~~l~~~~~~~~~~r~~~~~~~~~~d~~~~~~~~l~~~~~~~~-~~~~SPdG~~la~~-~~~~i~~~~~~~~~~  144 (740)
T 4a5s_A           67 YSISPDGQFILLEYNYVKQWRHSYTASYDIYDLNKRQLITEERIPNNTQ-WVTWSPVGHKLAYV-WNNDIYVKIEPNLPS  144 (740)
T ss_dssp             EEECTTSSEEEEEEEEEECSSSCEEEEEEEEETTTTEECCSSCCCTTEE-EEEECSSTTCEEEE-ETTEEEEESSTTSCC
T ss_pred             eEECCCCCEEEEEECCeeeEEEccceEEEEEECCCCcEEEcccCCCcce-eeEECCCCCEEEEE-ECCeEEEEECCCCce
Confidence            67788985 5555432         4566777 4555444322222334 78899999863333 356788888 555 4


Q ss_pred             EEEEeccCCCc----------------ccCCccEEEcCCCc-EEEEeCCCCCCcccccc----------------cc-cc
Q 026118           82 TVLVSQFNGSQ----------------LRFANDVIEASDGS-LYFTVSSTKFTPAEYYL----------------DL-VS  127 (243)
Q Consensus        82 ~~~~~~~~~~~----------------~~~~~~l~~d~~G~-l~v~~~~~~~~~~~~~~----------------~~-~~  127 (243)
                      +.+..  .+..                .....++.++|||+ |.++.... -....+..                .. ..
T Consensus       145 ~~lt~--~g~~~~~~~g~~~~v~~ee~~~~~~~~~wSpDg~~la~~~~d~-~~v~~~~~~~~~~~~~~~~~~~~~~yp~~  221 (740)
T 4a5s_A          145 YRITW--TGKEDIIYNGITDWVYEEEVFSAYSALWWSPNGTFLAYAQFND-TEVPLIEYSFYSDESLQYPKTVRVPYPKA  221 (740)
T ss_dssp             EECCS--CCBTTTEEESBCCHHHHHHTSSSSBCEEECTTSSEEEEEEEEC-TTCCEEEEEECCSTTCSSCEEEEEECCBT
T ss_pred             EEEcC--CCCccceecCcccccccchhcCCCcceEECCCCCEEEEEEEcc-cCCceEEEEeecCCCCCCCcceeecCCCC
Confidence            44322  1111                01223578999997 44432110 00001100                00 00


Q ss_pred             c--CCCceEEEEeCCC---C---eeEEeec------cccccceEEEcCCCCEEEEE-EcCC--CeEEEEEeecCC
Q 026118          128 G--EPHGVLLKYDPST---N---QTSLVLD------GLYFANGVALSEDERFLVVC-ESWK--FRCVKHFLKVSG  185 (243)
Q Consensus       128 ~--~~~g~v~~~~~~~---~---~~~~~~~------~~~~~~gi~~~~dg~~l~v~-~~~~--~~i~~~~~~~~~  185 (243)
                      +  .....|+.+|.++   +   +...+..      .......++|+|||+.++.. ....  ..|+.++.+++.
T Consensus       222 G~~~~~~~l~v~d~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~wspdg~~~~~~~~r~~~~~~i~~~d~~tg~  296 (740)
T 4a5s_A          222 GAVNPTVKFFVVNTDSLSSVTNATSIQITAPASMLIGDHYLCDVTWATQERISLQWLRRIQNYSVMDICDYDESS  296 (740)
T ss_dssp             TSCCCEEEEEEEETTSCCSSSCCCEEEECCCHHHHTSCEEEEEEEEEETTEEEEEEEESSTTEEEEEEEEEETTT
T ss_pred             cCcCCeeEEEEEECCCCCCCCcceEEEecCCccCCCCCeEEEEEEEeCCCeEEEEEeCCCCCEEEEEEEECCCCc
Confidence            1  1223688899987   6   4544432      22345678999999944333 2222  368888887643

>3zwu_A Alkaline phosphatase PHOX; hydrolase, beta-propeller, iron; 1.39A {Pseudomonas fluorescens}

Probab=97.82  E-value=6.8e-05  Score=65.07  Aligned_cols=76  Identities=17%  Similarity=0.216  Sum_probs=54.2

Q ss_pred             cccCCccEEEcCCCcEEEEeCCCCCCcccccccccccCCCceEEEEeCCCCeeEEeeccc--cccceEEEcCCCCEEEEE
Q 026118           92 QLRFANDVIEASDGSLYFTVSSTKFTPAEYYLDLVSGEPHGVLLKYDPSTNQTSLVLDGL--YFANGVALSEDERFLVVC  169 (243)
Q Consensus        92 ~~~~~~~l~~d~~G~l~v~~~~~~~~~~~~~~~~~~~~~~g~v~~~~~~~~~~~~~~~~~--~~~~gi~~~~dg~~l~v~  169 (243)
                      .+..|..|++|+.|+||+++.+......     .......+.++.+++.++++.++....  ....|++|+||+++||+.
T Consensus       474 ~f~~PDNL~fd~~G~LwI~eDg~~~~~~-----~~~~~gnn~~~~~~~~~g~~~rf~~~P~gaE~TG~~fspDg~tlfvn  548 (592)
T 3zwu_A          474 MFNSPDGLGFDKAGRLWILTDGDSSNAG-----DFAGMGNNQMLCADPATGEIRRFMVGPIGCEVTGISFSPDQKTLFVG  548 (592)
T ss_dssp             CCCCEEEEEECTTCCEEEEECCCCCCSG-----GGTTTCSCEEEEECTTTCCEEEEEECCTTCEEEEEEECTTSSEEEEE
T ss_pred             CccCCcceEECCCCCEEEEecCCCcccc-----cccccccceEEEEeCCCCeEEEEEeCCCCccCcCeeECCCCCEEEEE
Confidence            3567889999999999998764211100     011123457899999999999886542  346799999999999998


Q ss_pred             EcC
Q 026118          170 ESW  172 (243)
Q Consensus       170 ~~~  172 (243)
                      -+.
T Consensus       549 iQH  551 (592)
T 3zwu_A          549 IQH  551 (592)
T ss_dssp             EES
T ss_pred             EEC
Confidence            553

>3v7d_B Cell division control protein 4; WD 40 domain, phospho-peptide complex, E3 ubiquitin ligase, cell cycle, phospho binding protein, phosphorylation; HET: SEP; 2.31A {Saccharomyces cerevisiae} PDB: 1nex_B* 3mks_B*

Probab=97.82  E-value=0.0052  Score=51.31  Aligned_cols=152  Identities=11%  Similarity=0.057  Sum_probs=88.1

Q ss_pred             CcccEEEcCCCcEEEEeCCCcEEEEc-cCCceeEecccCCccccceEEc--cCCCEEEEEeCCCcEEEEe-cCC--cEEE
Q 026118           11 HPEDVSVDGNGVLYTATGDGWIKRMH-PNGTWEDWHQVGSQSLLGLTTT--KENNVIIVCDSQQGLLKVS-EEG--VTVL   84 (243)
Q Consensus        11 ~p~~i~~d~~g~l~~~~~~~~i~~~~-~~g~~~~~~~~~~~~~~~i~~~--~~g~l~~v~~~~~gl~~~~-~~g--~~~~   84 (243)
                      ...++++.+++.|..+..++.|..++ .+++..........+...+.+.  +++++++++..++.+..++ .++  ....
T Consensus       164 ~V~~l~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~~~l~s~s~d~~i~vwd~~~~~~~~~~  243 (464)
T 3v7d_B          164 GVWALKYAHGGILVSGSTDRTVRVWDIKKGCCTHVFEGHNSTVRCLDIVEYKNIKYIVTGSRDNTLHVWKLPKESSVPDH  243 (464)
T ss_dssp             CEEEEEECSTTEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEEEESSSCEEEEEEETTSCEEEEECCCCCCC---
T ss_pred             CEEEEEEcCCCEEEEEeCCCCEEEEECCCCcEEEEECCCCCccEEEEEecCCCCCEEEEEcCCCcEEEeeCCCCcccccc
Confidence            45567788888777777889999998 4454332222112223266666  5777756666656677777 443  1111


Q ss_pred             Ee-------------------ccCCCcccCCccEEEcCCCcEEEEeCCCCCCcccccccccccCCCceEEEEeCCCCeeE
Q 026118           85 VS-------------------QFNGSQLRFANDVIEASDGSLYFTVSSTKFTPAEYYLDLVSGEPHGVLLKYDPSTNQTS  145 (243)
Q Consensus        85 ~~-------------------~~~~~~~~~~~~l~~d~~G~l~v~~~~~~~~~~~~~~~~~~~~~~g~v~~~~~~~~~~~  145 (243)
                      ..                   ...+. ...  -.++.+++++.++.+                 ..+.|..+|..+++..
T Consensus       244 ~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~--v~~~~~~~~~l~~~~-----------------~d~~i~vwd~~~~~~~  303 (464)
T 3v7d_B          244 GEEHDYPLVFHTPEENPYFVGVLRGH-MAS--VRTVSGHGNIVVSGS-----------------YDNTLIVWDVAQMKCL  303 (464)
T ss_dssp             ---CCSSEEESCGGGCTTEEEEECCC-SSC--EEEEEEETTEEEEEE-----------------TTSCEEEEETTTTEEE
T ss_pred             cccCCcceEeeccCCCeEEEEEccCc-cce--EEEEcCCCCEEEEEe-----------------CCCeEEEEECCCCcEE
Confidence            00                   00000 011  123355566555422                 2457888898877655


Q ss_pred             Eeec-cccccceEEEcCCCCEEEEEEcCCCeEEEEEeec
Q 026118          146 LVLD-GLYFANGVALSEDERFLVVCESWKFRCVKHFLKV  183 (243)
Q Consensus       146 ~~~~-~~~~~~gi~~~~dg~~l~v~~~~~~~i~~~~~~~  183 (243)
                      .... .......++++++++.++.+ ..++.|..|+...
T Consensus       304 ~~~~~~~~~v~~~~~~~~~~~l~sg-~~dg~i~vwd~~~  341 (464)
T 3v7d_B          304 YILSGHTDRIYSTIYDHERKRCISA-SMDTTIRIWDLEN  341 (464)
T ss_dssp             EEECCCSSCEEEEEEETTTTEEEEE-ETTSCEEEEETTT
T ss_pred             EEecCCCCCEEEEEEcCCCCEEEEE-eCCCcEEEEECCC
Confidence            4332 33456789999999966655 4678899999764

>4ggc_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; HET: MRD; 1.35A {Homo sapiens}

Probab=97.81  E-value=0.0049  Score=48.35  Aligned_cols=90  Identities=8%  Similarity=-0.054  Sum_probs=53.2

Q ss_pred             ceEEEEeCCCCeeEEeeccccccceEEEcCCCCEEEEEE-cCCCeEEEEEeecCCCcceEEeccCCCCCCCceEECCCCC
Q 026118          132 GVLLKYDPSTNQTSLVLDGLYFANGVALSEDERFLVVCE-SWKFRCVKHFLKVSGRTDREIFIDNLPGGPDNVNLARDGS  210 (243)
Q Consensus       132 g~v~~~~~~~~~~~~~~~~~~~~~gi~~~~dg~~l~v~~-~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~i~~d~~G~  210 (243)
                      +.|..++..................+.++++++.++++. ..++.|..++.....  ....+. .-.+....++++++|+
T Consensus       221 ~~i~lwd~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~sg~~d~~i~iwd~~~~~--~~~~l~-gH~~~V~~l~~spdg~  297 (318)
T 4ggc_A          221 RHIRIWNVCSGACLSAVDAHSQVCSILWSPHYKELISGHGFAQNQLVIWKYPTMA--KVAELK-GHTSRVLSLTMSPDGA  297 (318)
T ss_dssp             CEEEEEETTTCCEEEEEECSSCEEEEEEETTTTEEEEEECTTTCCEEEEETTTCC--EEEEEC-CCSSCEEEEEECTTSS
T ss_pred             CEEEEEecccccccccccceeeeeeeeecccccceEEEEEcCCCEEEEEECCCCc--EEEEEc-CCCCCEEEEEEcCCCC
Confidence            445556666555444443344556788999999777664 356789999876432  222222 1223456689999998


Q ss_pred             EEEEEecCC-chhhh
Q 026118          211 FWISIIKMD-PKGIQ  224 (243)
Q Consensus       211 lwv~~~~~~-~~~~~  224 (243)
                      +.++....+ ..+++
T Consensus       298 ~l~S~s~D~~v~iWd  312 (318)
T 4ggc_A          298 TVASAAADETLRLWR  312 (318)
T ss_dssp             CEEEEETTTEEEEEC
T ss_pred             EEEEEecCCeEEEEE
Confidence            666544433 33443

>2xbg_A YCF48-like protein; photosynthesis, photosystem II, beta-propeller, assembly FAC; 1.50A {Thermosynechococcus elongatus}

Probab=97.79  E-value=0.0041  Score=49.99  Aligned_cols=179  Identities=16%  Similarity=0.102  Sum_probs=100.0

Q ss_pred             cccEEEcCCCcEEEEeCCCcEEEEccCC-ceeEecccCCccccceEEccCCCEEEEEeCCCcEEEEecC-C--cEEEEec
Q 026118           12 PEDVSVDGNGVLYTATGDGWIKRMHPNG-TWEDWHQVGSQSLLGLTTTKENNVIIVCDSQQGLLKVSEE-G--VTVLVSQ   87 (243)
Q Consensus        12 p~~i~~d~~g~l~~~~~~~~i~~~~~~g-~~~~~~~~~~~~~~~i~~~~~g~l~~v~~~~~gl~~~~~~-g--~~~~~~~   87 (243)
                      +..|++.+++++|++...+.|++-...| ++............++++++++++ |++....++++-.+. |  .+.+...
T Consensus       124 ~~~i~~~~~~~~~~~~~~g~v~~S~DgG~tW~~~~~~~~~~~~~~~~~~~~~~-~~~g~~G~~~~S~d~gG~tW~~~~~~  202 (327)
T 2xbg_A          124 PRLIKALGNGSAEMITNVGAIYRTKDSGKNWQALVQEAIGVMRNLNRSPSGEY-VAVSSRGSFYSTWEPGQTAWEPHNRT  202 (327)
T ss_dssp             EEEEEEEETTEEEEEETTCCEEEESSTTSSEEEEECSCCCCEEEEEECTTSCE-EEEETTSSEEEEECTTCSSCEEEECC
T ss_pred             eEEEEEECCCCEEEEeCCccEEEEcCCCCCCEEeecCCCcceEEEEEcCCCcE-EEEECCCcEEEEeCCCCCceeECCCC
Confidence            4567776778888887777888875434 465543322222227888888888 766655677776643 4  4544321


Q ss_pred             cCCCcccCCccEEEcCCCcEEEEeCCCCCCcccccccccccCCCceEEEEeCCCC-eeEEeecc-c---cccceEEEcCC
Q 026118           88 FNGSQLRFANDVIEASDGSLYFTVSSTKFTPAEYYLDLVSGEPHGVLLKYDPSTN-QTSLVLDG-L---YFANGVALSED  162 (243)
Q Consensus        88 ~~~~~~~~~~~l~~d~~G~l~v~~~~~~~~~~~~~~~~~~~~~~g~v~~~~~~~~-~~~~~~~~-~---~~~~gi~~~~d  162 (243)
                          .......++++++|++|++..                  .+.+++-+.+.+ .++.+... .   .....++++++
T Consensus       203 ----~~~~~~~~~~~~~g~~~~~~~------------------~G~~~~s~~D~G~tW~~~~~~~~~~~~~~~~v~~~~~  260 (327)
T 2xbg_A          203 ----TSRRLHNMGFTPDGRLWMIVN------------------GGKIAFSDPDNSENWGELLSPLRRNSVGFLDLAYRTP  260 (327)
T ss_dssp             ----SSSCEEEEEECTTSCEEEEET------------------TTEEEEEETTEEEEECCCBCTTSSCCSCEEEEEESSS
T ss_pred             ----CCCccceeEECCCCCEEEEeC------------------CceEEEecCCCCCeeEeccCCcccCCcceEEEEecCC
Confidence                123456778889999998743                  245666533423 33332211 1   12356778877


Q ss_pred             CCEEEEEEcCCCeEEEEEeecCCCcceEEeccC--CCCCCCceEECCCCCEEEEEecC
Q 026118          163 ERFLVVCESWKFRCVKHFLKVSGRTDREIFIDN--LPGGPDNVNLARDGSFWISIIKM  218 (243)
Q Consensus       163 g~~l~v~~~~~~~i~~~~~~~~~~~~~~~~~~~--~~~~~~~i~~d~~G~lwv~~~~~  218 (243)
                      ++ +|++.. ++.|++ ..+++  ...+.+...  .+.....++++.++++|++...+
T Consensus       261 ~~-~~~~g~-~g~i~~-S~DgG--~tW~~~~~~~~~~~~~~~v~~~~~~~~~~~G~~G  313 (327)
T 2xbg_A          261 NE-VWLAGG-AGALLC-SQDGG--QTWQQDVDVKKVPSNFYKILFFSPDQGFILGQKG  313 (327)
T ss_dssp             SC-EEEEES-TTCEEE-ESSTT--SSCEECGGGTTSSSCCCEEEEEETTEEEEECSTT
T ss_pred             CE-EEEEeC-CCeEEE-eCCCC--cccEEcCccCCCCCCeEEEEEECCCceEEEcCCc
Confidence            77 777754 455643 23332  223332211  12233557676666677765544

>3f3f_A Nucleoporin SEH1; structural protein, protein complex, nucleopori complex, nuclear pore complex, macromolecular assembly, MEM coat; 2.90A {Saccharomyces cerevisiae} PDB: 3f3g_A 3f3p_A 3ewe_A

Probab=97.78  E-value=0.0015  Score=51.61  Aligned_cols=66  Identities=8%  Similarity=-0.050  Sum_probs=40.3

Q ss_pred             CcccEEEcC--CCc-EEEEeCCCcEEEEcc-CCc----------eeEecccCCccccceEEccC--CCEEEEEeCCCcEE
Q 026118           11 HPEDVSVDG--NGV-LYTATGDGWIKRMHP-NGT----------WEDWHQVGSQSLLGLTTTKE--NNVIIVCDSQQGLL   74 (243)
Q Consensus        11 ~p~~i~~d~--~g~-l~~~~~~~~i~~~~~-~g~----------~~~~~~~~~~~~~~i~~~~~--g~l~~v~~~~~gl~   74 (243)
                      ...++++.+  ++. |.++..++.|..++. .++          ...+........ +++++++  +++++++...+.|.
T Consensus        59 ~v~~~~~~~~~d~~~l~s~~~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~v~-~~~~~~~~~~~~l~~~~~dg~v~  137 (351)
T 3f3f_A           59 SIVAIDWASPEYGRIIASASYDKTVKLWEEDPDQEECSGRRWNKLCTLNDSKGSLY-SVKFAPAHLGLKLACLGNDGILR  137 (351)
T ss_dssp             CEEEEEECCGGGCSEEEEEETTSCEEEEEECTTSCTTSSCSEEEEEEECCCSSCEE-EEEECCGGGCSEEEEEETTCEEE
T ss_pred             cEEEEEEcCCCCCCEEEEEcCCCeEEEEecCCCcccccccCcceeeeecccCCcee-EEEEcCCCCCcEEEEecCCCcEE
Confidence            355688877  465 556668888988883 321          222222222334 7889988  88756666555566


Q ss_pred             EEe
Q 026118           75 KVS   77 (243)
Q Consensus        75 ~~~   77 (243)
                      .++
T Consensus       138 iwd  140 (351)
T 3f3f_A          138 LYD  140 (351)
T ss_dssp             EEE
T ss_pred             Eec
Confidence            776

>2ad6_A Methanol dehydrogenase subunit 1; PQQ configuration, native, oxidoredu; HET: PQQ; 1.50A {Methylophilus methylotrophus} SCOP: b.70.1.1 PDB: 2ad7_A* 2ad8_A* 4aah_A* 1g72_A*

Probab=97.78  E-value=0.0059  Score=53.08  Aligned_cols=88  Identities=13%  Similarity=-0.021  Sum_probs=49.3

Q ss_pred             CCceEEEEeCCCCeeEEeeccccccceEEEcCCCCEEEEEEcCCCeEEEEEeecCCCcceEEeccCCCCCCCceEECCCC
Q 026118          130 PHGVLLKYDPSTNQTSLVLDGLYFANGVALSEDERFLVVCESWKFRCVKHFLKVSGRTDREIFIDNLPGGPDNVNLARDG  209 (243)
Q Consensus       130 ~~g~v~~~~~~~~~~~~~~~~~~~~~gi~~~~dg~~l~v~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~i~~d~~G  209 (243)
                      ..+.|+.+|+.+++...-........+..+...+..+|++ ..++.|+.+|..++.............+.|  +....+|
T Consensus       442 ~~g~l~a~D~~tG~~~W~~~~~~~~~~~~~~t~gg~v~~g-~~dg~l~a~D~~tG~~lw~~~~~~~~~~~p--~~~~~~G  518 (571)
T 2ad6_A          442 EMGQIRAFDLTTGKAKWTKWEKFAAWGGTLYTKGGLVWYA-TLDGYLKALDNKDGKELWNFKMPSGGIGSP--MTYSFKG  518 (571)
T ss_dssp             CCEEEEEECTTTCCEEEEEEESSCCCSBCEEETTTEEEEE-CTTSEEEEEETTTCCEEEEEECSSCCCSCC--EEEEETT
T ss_pred             CCCeEEEEECCCCCEEEEecCCCCccceeEEECCCEEEEE-cCCCeEEEEECCCCCEEEEEeCCCCcEeee--EEEEECC
Confidence            3478999999988765432211122222222344558886 457899999976543222111111111122  4444789


Q ss_pred             CEEEEEecCCc
Q 026118          210 SFWISIIKMDP  220 (243)
Q Consensus       210 ~lwv~~~~~~~  220 (243)
                      ++||+...+..
T Consensus       519 ~~yv~~~~G~~  529 (571)
T 2ad6_A          519 KQYIGSMYGVG  529 (571)
T ss_dssp             EEEEEEEECCC
T ss_pred             EEEEEEECCCC
Confidence            99999887654

>3gre_A Serine/threonine-protein kinase VPS15; seven-bladed propeller, WD repeat, scaffold protein, ATP- binding, endosome, golgi apparatus; 1.80A {Saccharomyces cerevisiae}

Probab=97.75  E-value=0.0029  Score=52.41  Aligned_cols=154  Identities=12%  Similarity=0.121  Sum_probs=90.5

Q ss_pred             CCcccEEEcC-CCcEE-EEeCCCcEEEEcc-C---Cc----eeEecccCCccccceEEccCCCEEEEEeCCCcEEEEe-c
Q 026118           10 NHPEDVSVDG-NGVLY-TATGDGWIKRMHP-N---GT----WEDWHQVGSQSLLGLTTTKENNVIIVCDSQQGLLKVS-E   78 (243)
Q Consensus        10 ~~p~~i~~d~-~g~l~-~~~~~~~i~~~~~-~---g~----~~~~~~~~~~~~~~i~~~~~g~l~~v~~~~~gl~~~~-~   78 (243)
                      ..-.++++.+ +|.++ .+..++.|..++. .   +.    ...+. ...... ++++++++++++++..++.+..++ .
T Consensus        64 ~~V~~~~~s~~~~~~l~s~s~dg~v~vwd~~~~~~~~~~~~~~~~~-h~~~v~-~~~~~~~~~~l~s~s~dg~i~vwd~~  141 (437)
T 3gre_A           64 NSITSSAVSPGETPYLITGSDQGVIKIWNLKEIIVGEVYSSSLTYD-CSSTVT-QITMIPNFDAFAVSSKDGQIIVLKVN  141 (437)
T ss_dssp             SCEEEEEEECSSSCEEEEEETTSEEEEEEHHHHHTTCCCSCSEEEE-CSSCEE-EEEECTTSSEEEEEETTSEEEEEEEE
T ss_pred             CceEEEEECCCCCCEEEEecCCceEEEeECcccccCcccceeeecc-CCCCEE-EEEEeCCCCEEEEEeCCCEEEEEEec
Confidence            4556788999 88644 5558888999982 2   32    11111 122334 899999999856666555455555 2


Q ss_pred             ---CC-cEEEEe-----ccCCC---cccCCccEE--EcCCCcEEEEeCCCCCCcccccccccccCCCceEEEEeCCCCee
Q 026118           79 ---EG-VTVLVS-----QFNGS---QLRFANDVI--EASDGSLYFTVSSTKFTPAEYYLDLVSGEPHGVLLKYDPSTNQT  144 (243)
Q Consensus        79 ---~g-~~~~~~-----~~~~~---~~~~~~~l~--~d~~G~l~v~~~~~~~~~~~~~~~~~~~~~~g~v~~~~~~~~~~  144 (243)
                         ++ ......     .....   ....+.++.  ..+++.++++.+                 ..+.|..+|..+++.
T Consensus       142 ~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~-----------------~d~~i~iwd~~~~~~  204 (437)
T 3gre_A          142 HYQQESEVKFLNCECIRKINLKNFGKNEYAVRMRAFVNEEKSLLVALT-----------------NLSRVIIFDIRTLER  204 (437)
T ss_dssp             EEEETTEEEEEEEEEEEEEEGGGGSSCCCEEEEEEEECSSCEEEEEEE-----------------TTSEEEEEETTTCCE
T ss_pred             cccCCceeeccccceeEEEEccCcccccCceEEEEEEcCCCCEEEEEe-----------------CCCeEEEEeCCCCee
Confidence               33 211111     00000   112223333  446676666532                 246788899887765


Q ss_pred             EEeec---cccccceEEEcCCCCEEEEEEcCCCeEEEEEeec
Q 026118          145 SLVLD---GLYFANGVALSEDERFLVVCESWKFRCVKHFLKV  183 (243)
Q Consensus       145 ~~~~~---~~~~~~gi~~~~dg~~l~v~~~~~~~i~~~~~~~  183 (243)
                      .....   .......+++++++++|+.+ ..++.|..||+..
T Consensus       205 ~~~~~~~~h~~~v~~~~~s~~~~~l~s~-~~dg~i~iwd~~~  245 (437)
T 3gre_A          205 LQIIENSPRHGAVSSICIDEECCVLILG-TTRGIIDIWDIRF  245 (437)
T ss_dssp             EEEEECCGGGCCEEEEEECTTSCEEEEE-ETTSCEEEEETTT
T ss_pred             eEEEccCCCCCceEEEEECCCCCEEEEE-cCCCeEEEEEcCC
Confidence            54333   23567889999999966655 4568899998764

>1z68_A Fibroblast activation protein, alpha subunit; seprase, fibroblast activation protein alpha,fapalpha, dipeptidylpeptidase,S9B; HET: NAG NDG; 2.60A {Homo sapiens}

Probab=97.70  E-value=0.00046  Score=61.34  Aligned_cols=162  Identities=9%  Similarity=-0.002  Sum_probs=85.2

Q ss_pred             cccEEEcCCCc-EEEEeC---------CCcEEEEcc-CCce---eEecccCCccccceEEccCCCEEEEEeCCCcEEEEe
Q 026118           12 PEDVSVDGNGV-LYTATG---------DGWIKRMHP-NGTW---EDWHQVGSQSLLGLTTTKENNVIIVCDSQQGLLKVS   77 (243)
Q Consensus        12 p~~i~~d~~g~-l~~~~~---------~~~i~~~~~-~g~~---~~~~~~~~~~~~~i~~~~~g~l~~v~~~~~gl~~~~   77 (243)
                      ..++++.+||. |.++..         ++.|+.++. +++.   ....   .... .++++|||+.+.++. ...|+.++
T Consensus        62 ~~~~~~SpDg~~la~~~~~~~~~~~s~~~~i~~~d~~~g~~~~~~~l~---~~~~-~~~~SPDG~~la~~~-~~~i~~~~  136 (719)
T 1z68_A           62 ASNYGLSPDRQFVYLESDYSKLWRYSYTATYYIYDLSNGEFVRGNELP---RPIQ-YLCWSPVGSKLAYVY-QNNIYLKQ  136 (719)
T ss_dssp             CSEEEECTTSSEEEEEEEEEECSSSCEEEEEEEEETTTTEECCSSCCC---SSBC-CEEECSSTTCEEEEE-TTEEEEES
T ss_pred             eeeEEECCCCCeEEEEecCceeEEeecceEEEEEECCCCccccceecC---cccc-cceECCCCCEEEEEE-CCeEEEEe
Confidence            45788999996 444443         467888884 4544   2221   2334 789999998644443 56788888


Q ss_pred             -cCC-cEEEEeccCCCcc----------------cCCccEEEcCCCcEEEEeCCCCCCccccc--------------ccc
Q 026118           78 -EEG-VTVLVSQFNGSQL----------------RFANDVIEASDGSLYFTVSSTKFTPAEYY--------------LDL  125 (243)
Q Consensus        78 -~~g-~~~~~~~~~~~~~----------------~~~~~l~~d~~G~l~v~~~~~~~~~~~~~--------------~~~  125 (243)
                       .++ ...+..  .+...                ....+++++|||+..+..+...-....+.              ...
T Consensus       137 ~~~g~~~~l~~--~~~~~~v~~g~~~~v~~ee~~~~~~~~~wSPDG~~la~~~~d~~~~~~~~~~~~~~~~~~~~~~~~y  214 (719)
T 1z68_A          137 RPGDPPFQITF--NGRENKIFNGIPDWVYEEEMLATKYALWWSPNGKFLAYAEFNDTDIPVIAYSYYGDEQYPRTINIPY  214 (719)
T ss_dssp             STTSCCEECCC--CCBTTTEEESSCCHHHHHHTTCSSCCEEECTTSSEEEEEEEECTTSCEEEEEECCSSSSCEEEEEEC
T ss_pred             CCCCCcEEEec--CCCcCCeEcccccceeeeecccCcccEEECCCCCEEEEEEECCCCCceEEeeccCCCCCccceeecC
Confidence             566 443321  11100                11247899999974443211000000000              000


Q ss_pred             ---cccCCCceEEEEeCCCCeeE---Eee------ccccccceEEEcCCCCEEEEEEc-CC--CeEEEEE
Q 026118          126 ---VSGEPHGVLLKYDPSTNQTS---LVL------DGLYFANGVALSEDERFLVVCES-WK--FRCVKHF  180 (243)
Q Consensus       126 ---~~~~~~g~v~~~~~~~~~~~---~~~------~~~~~~~gi~~~~dg~~l~v~~~-~~--~~i~~~~  180 (243)
                         ........|+.+|.++++..   .+.      ........++|+||++.++.... ..  ..|+.++
T Consensus       215 p~~g~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~SpD~~~~~~~~~~~~~~~~l~~~d  284 (719)
T 1z68_A          215 PKAGAKNPVVRIFIIDTTYPAYVGPQEVPVPAMIASSDYYFSWLTWVTDERVCLQWLKRVQNVSVLSICD  284 (719)
T ss_dssp             CBTTSCCCEEEEEEEESSCHHHHCCEECCCCHHHHTSCEEEEEEEESSSSEEEEEEEESSTTEEEEEEEE
T ss_pred             CCCCCCCCeeEEEEEECCCCCccceeEccCCccCCCCcceEEEeEEeCCCeEEEEEeccccCeEEEEEEc
Confidence               00012236888888866531   221      12223467899999874444322 21  3488888

>3iuj_A Prolyl endopeptidase; hydrolase; 1.80A {Aeromonas punctata} PDB: 3iul_A 3ium_A 3ivm_A* 3iur_A* 3iun_A* 3iuq_A* 3muo_A* 3mun_A*

Probab=97.68  E-value=0.0042  Score=55.20  Aligned_cols=165  Identities=12%  Similarity=0.029  Sum_probs=87.8

Q ss_pred             CcccEEEcCCCc--EEEEeCC----CcEEEEc-cCCceeEecccCCccccceEEccCCCEEEEEeCCC------------
Q 026118           11 HPEDVSVDGNGV--LYTATGD----GWIKRMH-PNGTWEDWHQVGSQSLLGLTTTKENNVIIVCDSQQ------------   71 (243)
Q Consensus        11 ~p~~i~~d~~g~--l~~~~~~----~~i~~~~-~~g~~~~~~~~~~~~~~~i~~~~~g~l~~v~~~~~------------   71 (243)
                      .-.++++.+||+  +|..+..    ..|+.+| .+|+............ +++++ ||+.|+++....            
T Consensus       130 ~l~~~~~SpDg~~lAy~~~~~G~~~~~i~v~dl~tg~~~~~~~~~~k~~-~~~Ws-Dg~~l~y~~~~~~~~~~~~~~~~~  207 (693)
T 3iuj_A          130 ALDQLSFSRDGRILAYSLSLAGSDWREIHLMDVESKQPLETPLKDVKFS-GISWL-GNEGFFYSSYDKPDGSELSARTDQ  207 (693)
T ss_dssp             EEEEEEECTTSSEEEEEEECSSCCEEEEEEEETTTCSEEEEEEEEEESC-CCEEE-TTTEEEEEESSCCC-------CCC
T ss_pred             EEEEEEECCCCCEEEEEEecCCCceEEEEEEECCCCCCCccccCCceec-cEEEe-CCCEEEEEEecCcccccccccCCC
Confidence            345568888886  3434322    3477777 4566443322111123 67888 887546655432            


Q ss_pred             -cEEEEe-cCC---cEEEEeccCCCcccCCccEEEcCCCc-EEEEeCCCCCCcccccccccccCCCceEEEEeCCCC--e
Q 026118           72 -GLLKVS-EEG---VTVLVSQFNGSQLRFANDVIEASDGS-LYFTVSSTKFTPAEYYLDLVSGEPHGVLLKYDPSTN--Q  143 (243)
Q Consensus        72 -gl~~~~-~~g---~~~~~~~~~~~~~~~~~~l~~d~~G~-l~v~~~~~~~~~~~~~~~~~~~~~~g~v~~~~~~~~--~  143 (243)
                       .|++.+ .++   ...+...... ......++.+++||+ |+++...              ......||.++.+++  +
T Consensus       208 ~~v~~~~lgt~~~~~~~v~~~~~~-~~~~~~~~~~SpDg~~l~~~~~~--------------~~~~~~i~~~d~~~~~~~  272 (693)
T 3iuj_A          208 HKVYFHRLGTAQEDDRLVFGAIPA-QHHRYVGATVTEDDRFLLISAAN--------------STSGNRLYVKDLSQENAP  272 (693)
T ss_dssp             CEEEEEETTSCGGGCEEEESCSGG-GCCSEEEEEECTTSCEEEEEEES--------------SSSCCEEEEEETTSTTCC
T ss_pred             cEEEEEECCCCcccceEEEecCCC-CCeEEEEEEEcCCCCEEEEEEcc--------------CCCCcEEEEEECCCCCCc
Confidence             266666 333   2333321110 011234668899997 4444221              112247899997655  5


Q ss_pred             eEEeeccccccceEEEcCCCCEEEEEEcC---CCeEEEEEeecCCCcceEEec
Q 026118          144 TSLVLDGLYFANGVALSEDERFLVVCESW---KFRCVKHFLKVSGRTDREIFI  193 (243)
Q Consensus       144 ~~~~~~~~~~~~gi~~~~dg~~l~v~~~~---~~~i~~~~~~~~~~~~~~~~~  193 (243)
                      ++.+.......... ++++|+.+|+....   +..|+++++++....+.+.+.
T Consensus       273 ~~~l~~~~~~~~~~-~~~~g~~l~~~t~~~~~~~~l~~~d~~~~~~~~~~~l~  324 (693)
T 3iuj_A          273 LLTVQGDLDADVSL-VDNKGSTLYLLTNRDAPNRRLVTVDAANPGPAHWRDLI  324 (693)
T ss_dssp             CEEEECSSSSCEEE-EEEETTEEEEEECTTCTTCEEEEEETTSCCGGGCEEEE
T ss_pred             eEEEeCCCCceEEE-EeccCCEEEEEECCCCCCCEEEEEeCCCCCccccEEEe
Confidence            56655433222222 56777778876543   368999988765443444443

>3gre_A Serine/threonine-protein kinase VPS15; seven-bladed propeller, WD repeat, scaffold protein, ATP- binding, endosome, golgi apparatus; 1.80A {Saccharomyces cerevisiae}

Probab=97.65  E-value=0.0056  Score=50.68  Aligned_cols=151  Identities=9%  Similarity=0.039  Sum_probs=89.0

Q ss_pred             CcccEEEcCCCc-EEEEeCCCcEEEEcc----CCceeEecc-------------cCCccccceE--EccCCCEEEEEeCC
Q 026118           11 HPEDVSVDGNGV-LYTATGDGWIKRMHP----NGTWEDWHQ-------------VGSQSLLGLT--TTKENNVIIVCDSQ   70 (243)
Q Consensus        11 ~p~~i~~d~~g~-l~~~~~~~~i~~~~~----~g~~~~~~~-------------~~~~~~~~i~--~~~~g~l~~v~~~~   70 (243)
                      ...++++.+++. |.++..++.|..++.    .++......             ...... .+.  +.+++++++++...
T Consensus       113 ~v~~~~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~-~~~~~~~~~~~~l~~~~~d  191 (437)
T 3gre_A          113 TVTQITMIPNFDAFAVSSKDGQIIVLKVNHYQQESEVKFLNCECIRKINLKNFGKNEYAV-RMRAFVNEEKSLLVALTNL  191 (437)
T ss_dssp             CEEEEEECTTSSEEEEEETTSEEEEEEEEEEEETTEEEEEEEEEEEEEEGGGGSSCCCEE-EEEEEECSSCEEEEEEETT
T ss_pred             CEEEEEEeCCCCEEEEEeCCCEEEEEEeccccCCceeeccccceeEEEEccCcccccCce-EEEEEEcCCCCEEEEEeCC
Confidence            355788888775 556668888887763    343322111             011112 333  44678875666665


Q ss_pred             CcEEEEe-cCC-c-EEEEeccCCCcccCCccEEEcCCCcEEEEeCCCCCCcccccccccccCCCceEEEEeCCCCeeEEe
Q 026118           71 QGLLKVS-EEG-V-TVLVSQFNGSQLRFANDVIEASDGSLYFTVSSTKFTPAEYYLDLVSGEPHGVLLKYDPSTNQTSLV  147 (243)
Q Consensus        71 ~gl~~~~-~~g-~-~~~~~~~~~~~~~~~~~l~~d~~G~l~v~~~~~~~~~~~~~~~~~~~~~~g~v~~~~~~~~~~~~~  147 (243)
                      +.|..+| .++ . ..+...   .....+.+++++++|++.++.+                 ..+.|..+|..+++....
T Consensus       192 ~~i~iwd~~~~~~~~~~~~~---~h~~~v~~~~~s~~~~~l~s~~-----------------~dg~i~iwd~~~~~~~~~  251 (437)
T 3gre_A          192 SRVIIFDIRTLERLQIIENS---PRHGAVSSICIDEECCVLILGT-----------------TRGIIDIWDIRFNVLIRS  251 (437)
T ss_dssp             SEEEEEETTTCCEEEEEECC---GGGCCEEEEEECTTSCEEEEEE-----------------TTSCEEEEETTTTEEEEE
T ss_pred             CeEEEEeCCCCeeeEEEccC---CCCCceEEEEECCCCCEEEEEc-----------------CCCeEEEEEcCCccEEEE
Confidence            6677888 555 2 222211   0124577899999998777632                 235688888887765443


Q ss_pred             e--ccccccceEEEc----CCCCEEEEEEcCCCeEEEEEeec
Q 026118          148 L--DGLYFANGVALS----EDERFLVVCESWKFRCVKHFLKV  183 (243)
Q Consensus       148 ~--~~~~~~~gi~~~----~dg~~l~v~~~~~~~i~~~~~~~  183 (243)
                      .  ........++++    ++++ ++++...++.|..|+...
T Consensus       252 ~~~~~~~~v~~~~~~~~~s~~~~-~l~s~~~dg~i~iwd~~~  292 (437)
T 3gre_A          252 WSFGDHAPITHVEVCQFYGKNSV-IVVGGSSKTFLTIWNFVK  292 (437)
T ss_dssp             EBCTTCEEEEEEEECTTTCTTEE-EEEEESTTEEEEEEETTT
T ss_pred             EecCCCCceEEEEeccccCCCcc-EEEEEcCCCcEEEEEcCC
Confidence            2  223345667444    5666 444545677899998764

>3amr_A 3-phytase; beta-propeller, phytate, MYO-inositol hexasulfate, hydrolase-hydrolase inhibitor complex; HET: IHS; 1.25A {Bacillus subtilis} PDB: 3ams_A* 2poo_A 1poo_A 1qlg_A 1h6l_A 1cvm_A

Probab=97.63  E-value=0.0076  Score=48.81  Aligned_cols=139  Identities=14%  Similarity=0.207  Sum_probs=80.0

Q ss_pred             EEEEe-C--CCcEEEE--cc-CCceeEecc-------cCCccccceEE--ccC-CC-EEEEEeCCCcEEEEe----cCC-
Q 026118           23 LYTAT-G--DGWIKRM--HP-NGTWEDWHQ-------VGSQSLLGLTT--TKE-NN-VIIVCDSQQGLLKVS----EEG-   80 (243)
Q Consensus        23 l~~~~-~--~~~i~~~--~~-~g~~~~~~~-------~~~~~~~~i~~--~~~-g~-l~~v~~~~~gl~~~~----~~g-   80 (243)
                      +++++ .  ++.|..+  ++ .+++..+..       ....|. |+++  +++ |+ ++|+......+..+.    .+| 
T Consensus        89 a~as~R~~~~n~l~vf~iDp~~~~l~~i~~~~~pv~t~~~~py-Glcly~~~~~g~~yafV~~k~G~~~q~~l~~~~~g~  167 (355)
T 3amr_A           89 AAASNRSEGKNTIEIYAIDGKNGTLQSMTDPDHPIATAINEVY-GFTLYHSQKTGKYYAMVTGKEGEFEQYELKADKNGY  167 (355)
T ss_dssp             EEEEECSTTCCEEEEEEECTTTCCEEECSCTTSCEECCCSSCC-CEEEEECTTTCCEEEEEECSSSEEEEEEEEECTTSC
T ss_pred             EEEeCCCCCCCeEEEEEECCCCCceeeccccccCcCCCCCCee-EEEEEecCCCCcEEEEEECCCCeEEEEEEEeCCCCc
Confidence            35555 3  4666555  53 445555421       114567 7777  664 54 346666544444433    233 


Q ss_pred             cE-EEEeccCCCcccCCccEEEcC-CCcEEEEeCCCCCCcccccccccccCCCceEEEEe--CCC---CeeEEeec--cc
Q 026118           81 VT-VLVSQFNGSQLRFANDVIEAS-DGSLYFTVSSTKFTPAEYYLDLVSGEPHGVLLKYD--PST---NQTSLVLD--GL  151 (243)
Q Consensus        81 ~~-~~~~~~~~~~~~~~~~l~~d~-~G~l~v~~~~~~~~~~~~~~~~~~~~~~g~v~~~~--~~~---~~~~~~~~--~~  151 (243)
                      .. .+...+...  ..+.++++|+ .|.||++...                  .+||+|+  +++   +++.....  ..
T Consensus       168 ~~~~lVR~f~lg--sq~EgcvvDd~~g~Lyv~eEd------------------~GIw~~da~p~~~~~~~~v~~~~~g~l  227 (355)
T 3amr_A          168 ISGKKVRAFKMN--SQTEGMAADDEYGRLYIAEED------------------EAIWKFSAEPDGGSNGTVIDRADGRHL  227 (355)
T ss_dssp             EEEEEEEEEECS--SCEEEEEEETTTTEEEEEETT------------------TEEEEEECSTTSCSCCEEEEEBSSSSB
T ss_pred             ccceEEEEecCC--CCcceEEEcCCCCeEEEeccc------------------ceEEEEeCCcCCCCCceEEEEecCCcc
Confidence            21 122222211  3577888987 5889999532                  4699999  443   22222221  11


Q ss_pred             -cccceEEE--cCCCC-EEEEEEcCCCeEEEEEee
Q 026118          152 -YFANGVAL--SEDER-FLVVCESWKFRCVKHFLK  182 (243)
Q Consensus       152 -~~~~gi~~--~~dg~-~l~v~~~~~~~i~~~~~~  182 (243)
                       ..+.||++  .++++ +|++++..++++..|+..
T Consensus       228 ~aDvEGLai~~~~~g~gyLivSsQG~~s~~Vydr~  262 (355)
T 3amr_A          228 TRDIEGLTIYYAADGKGYLMASSQGNSSYAIYDRQ  262 (355)
T ss_dssp             CSCEEEEEEEECGGGCEEEEEEEGGGTEEEEEESS
T ss_pred             ccCcceEEEEecCCCCEEEEEEcCCCCEEEEEECC
Confidence             35788988  45666 899999999999999986

>1yr2_A Prolyl oligopeptidase; prolyl endopeptidase, mechanistic study, celiac sprue, hydro; 1.80A {Novosphingobium capsulatum}

Probab=97.63  E-value=0.0067  Score=54.29  Aligned_cols=185  Identities=12%  Similarity=0.055  Sum_probs=95.5

Q ss_pred             ccEEEcCCCc-EE-EEeCCC----cEEEEc-cCCceeEecccCCccccceEEccCCCEEEEEeCCC--------------
Q 026118           13 EDVSVDGNGV-LY-TATGDG----WIKRMH-PNGTWEDWHQVGSQSLLGLTTTKENNVIIVCDSQQ--------------   71 (243)
Q Consensus        13 ~~i~~d~~g~-l~-~~~~~~----~i~~~~-~~g~~~~~~~~~~~~~~~i~~~~~g~l~~v~~~~~--------------   71 (243)
                      .++++.+||. |. .....|    .|+.++ .+|+............ ++++++| +.++++....              
T Consensus       166 ~~~~~SPDG~~la~~~~~~G~e~~~i~v~dl~tg~~~~~~~~~~~~~-~~~wspD-~~l~~~~~~~~~~~~~~~~~~~~~  243 (741)
T 1yr2_A          166 DAWAASDDGRLLAYSVQDGGSDWRTVKFVGVADGKPLADELKWVKFS-GLAWLGN-DALLYSRFAEPKEGQAFQALNYNQ  243 (741)
T ss_dssp             EEEEECTTSSEEEEEEEETTCSEEEEEEEETTTCCEEEEEEEEEESC-CCEESTT-SEEEEEECCCC--------CCCCC
T ss_pred             EeEEECCCCCEEEEEEcCCCCceEEEEEEECCCCCCCCccCCCceec-cEEEECC-CEEEEEEecCcccccccccCCCCC
Confidence            4577888885 33 333323    488888 4555543322111113 7888888 6546655332              


Q ss_pred             cEEEEe-cCC-c--EEEEeccCCCcccCCccEEEcCCCc-EEEEeCCCCCCcccccccccccCCCceEEEEeCCCC--e-
Q 026118           72 GLLKVS-EEG-V--TVLVSQFNGSQLRFANDVIEASDGS-LYFTVSSTKFTPAEYYLDLVSGEPHGVLLKYDPSTN--Q-  143 (243)
Q Consensus        72 gl~~~~-~~g-~--~~~~~~~~~~~~~~~~~l~~d~~G~-l~v~~~~~~~~~~~~~~~~~~~~~~g~v~~~~~~~~--~-  143 (243)
                      .|++++ .++ .  ..+......  .....++.+++||+ |.++....             ......|+.+|.+++  + 
T Consensus       244 ~v~~~~lgt~~~~~~lv~~~~~~--~~~~~~~~~SpDG~~l~~~~~~~-------------~~~~~~l~~~d~~~~~~~~  308 (741)
T 1yr2_A          244 TVWLHRLGTPQSADQPVFATPEL--PKRGHGASVSSDGRWVVITSSEG-------------TDPVNTVHVARVTNGKIGP  308 (741)
T ss_dssp             EEEEEETTSCGGGCEEEECCTTC--TTCEEEEEECTTSCEEEEEEECT-------------TCSCCEEEEEEEETTEECC
T ss_pred             EEEEEECCCCchhCEEEeccCCC--CeEEEEEEECCCCCEEEEEEEcc-------------CCCcceEEEEECCCCCCcc
Confidence            266666 433 1  222221111  11345678899997 44432110             012347898888766  5 


Q ss_pred             eEEeeccccccceEEEcCCCCEEEEEEcC---CCeEEEEEeecCCCcceEEeccCCCCCCCceEECCCCCEEEEEec
Q 026118          144 TSLVLDGLYFANGVALSEDERFLVVCESW---KFRCVKHFLKVSGRTDREIFIDNLPGGPDNVNLARDGSFWISIIK  217 (243)
Q Consensus       144 ~~~~~~~~~~~~gi~~~~dg~~l~v~~~~---~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~i~~d~~G~lwv~~~~  217 (243)
                      ++.+.......... ++++|+.||+....   +..|++++.++.. ...+.+.........+++++ ++.|++....
T Consensus       309 ~~~l~~~~~~~~~~-~~~dg~~l~~~s~~~~~~~~l~~~d~~~~~-~~~~~l~~~~~~~l~~~~~~-~~~lv~~~~~  382 (741)
T 1yr2_A          309 VTALIPDLKAQWDF-VDGVGDQLWFVSGDGAPLKKIVRVDLSGST-PRFDTVVPESKDNLESVGIA-GNRLFASYIH  382 (741)
T ss_dssp             CEEEECSSSSCEEE-EEEETTEEEEEECTTCTTCEEEEEECSSSS-CEEEEEECCCSSEEEEEEEE-BTEEEEEEEE
T ss_pred             cEEecCCCCceEEE-EeccCCEEEEEECCCCCCCEEEEEeCCCCc-cccEEEecCCCCeEEEEEEE-CCEEEEEEEE
Confidence            56665433333333 35888888887542   4569999876532 23333322222222344454 4445554443

>3vu4_A KMHSV2; beta-propeller fold, protein transport; 2.60A {Kluyveromyces marxianus} PDB: 4av9_A 4av8_A 4exv_A

Probab=97.61  E-value=0.0099  Score=48.09  Aligned_cols=109  Identities=15%  Similarity=0.134  Sum_probs=65.2

Q ss_pred             ceEEccCCCEEEEEeCCCc-EEEEe-cCC--cEEEEeccCCCcccCCccEEEcCCCcEEEEeCCCCCCcccccccccccC
Q 026118           54 GLTTTKENNVIIVCDSQQG-LLKVS-EEG--VTVLVSQFNGSQLRFANDVIEASDGSLYFTVSSTKFTPAEYYLDLVSGE  129 (243)
Q Consensus        54 ~i~~~~~g~l~~v~~~~~g-l~~~~-~~g--~~~~~~~~~~~~~~~~~~l~~d~~G~l~v~~~~~~~~~~~~~~~~~~~~  129 (243)
                      +++++++|++|..+..++. +..+| .++  ...+..   +.....+.+++++|+|++.++.+.                
T Consensus       200 ~~~~s~~g~~l~s~s~d~~~v~iwd~~~~~~~~~~~~---g~h~~~v~~~~~s~~~~~l~s~s~----------------  260 (355)
T 3vu4_A          200 MVRLNRKSDMVATCSQDGTIIRVFKTEDGVLVREFRR---GLDRADVVDMKWSTDGSKLAVVSD----------------  260 (355)
T ss_dssp             EEEECTTSSEEEEEETTCSEEEEEETTTCCEEEEEEC---TTCCSCEEEEEECTTSCEEEEEET----------------
T ss_pred             EEEECCCCCEEEEEeCCCCEEEEEECCCCcEEEEEEc---CCCCCcEEEEEECCCCCEEEEEEC----------------
Confidence            8999999998566665554 77777 666  222221   111245778999999987776432                


Q ss_pred             CCceEEEEeCCCCeeE---Ee--------------------ecc-ccccceEEEcCCCCEEEEEEcCCCeEEEEEeec
Q 026118          130 PHGVLLKYDPSTNQTS---LV--------------------LDG-LYFANGVALSEDERFLVVCESWKFRCVKHFLKV  183 (243)
Q Consensus       130 ~~g~v~~~~~~~~~~~---~~--------------------~~~-~~~~~gi~~~~dg~~l~v~~~~~~~i~~~~~~~  183 (243)
                       .+.|..+|...+...   .+                    ... ......++++++++.+.+. ..++.+..|+...
T Consensus       261 -d~~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~d~~~l~~~-~~dg~~~~~~~~~  336 (355)
T 3vu4_A          261 -KWTLHVFEIFNDQDNKRHALKGWINMKYFQSEWSLCNFKLSVDKHVRGCKIAWISESSLVVVW-PHTRMIETFKVVF  336 (355)
T ss_dssp             -TCEEEEEESSCCSCCCSEETTTTEECCCCCCSSCSEEEECCCCTTCCCCEEEESSSSEEEEEE-TTTTEEEEEEEEE
T ss_pred             -CCEEEEEEccCCCCcccccccceeeccccccccceeEEEeccCCCCCceEEEEeCCCCEEEEE-eCCCeEEEEEEEc
Confidence             245555555432211   00                    000 0011458999999856555 5678888888764

>1flg_A Protein (quinoprotein ethanol dehydrogenase); superbarrel, oxidoreductase; HET: PQQ; 2.60A {Pseudomonas aeruginosa} SCOP: b.70.1.1

Probab=97.58  E-value=0.02  Score=49.92  Aligned_cols=85  Identities=12%  Similarity=0.014  Sum_probs=48.6

Q ss_pred             CceEEEEeCCCCeeEEeec-cccccceEEEcCCCCEEEEEEcCCCeEEEEEeecCCCcceEEeccCCCCCCCceEECCCC
Q 026118          131 HGVLLKYDPSTNQTSLVLD-GLYFANGVALSEDERFLVVCESWKFRCVKHFLKVSGRTDREIFIDNLPGGPDNVNLARDG  209 (243)
Q Consensus       131 ~g~v~~~~~~~~~~~~~~~-~~~~~~gi~~~~dg~~l~v~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~i~~d~~G  209 (243)
                      .+.|+.+|+.+|+...-.. ......+... -.+..+|++ ..++.|+.||..++..-.........  ...-+....+|
T Consensus       465 ~G~l~A~D~~tG~~~W~~~~~~~~~~g~~~-tagglvf~g-~~dg~l~A~D~~tG~~lW~~~~~~g~--~a~P~~y~~~G  540 (582)
T 1flg_A          465 VGSLRAMDPVSGKVVWEHKEHLPLWAGVLA-TAGNLVFTG-TGDGYFKAFDAKSGKELWKFQTGSGI--VSPPITWEQDG  540 (582)
T ss_dssp             SEEEEEECTTTCCEEEEEEESSCCCSCCEE-ETTTEEEEE-CTTSEEEEEETTTCCEEEEEECSSCC--CSCCEEEEETT
T ss_pred             cceEEEEECCCCCEEEEecCCCCCcccceE-eCCCEEEEE-CCCCcEEEEECCCCCEEEEecCCCCc--ccCceEEEECC
Confidence            5789999999987653322 1111122222 245557776 45789999997654322211111111  11226666899


Q ss_pred             CEEEEEecCC
Q 026118          210 SFWISIIKMD  219 (243)
Q Consensus       210 ~lwv~~~~~~  219 (243)
                      ++||+...+.
T Consensus       541 ~qYv~~~~G~  550 (582)
T 1flg_A          541 EQYLGVTVGY  550 (582)
T ss_dssp             EEEEEEEECC
T ss_pred             EEEEEEEccC
Confidence            9999988773

>1kv9_A Type II quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM EPE; 1.90A {Pseudomonas putida} SCOP: a.3.1.6 b.70.1.1

Probab=97.51  E-value=0.015  Score=51.58  Aligned_cols=86  Identities=14%  Similarity=0.086  Sum_probs=49.3

Q ss_pred             CceEEEEeCCCCeeEEeeccccccceEEEcCCCCEEEEEEcCCCeEEEEEeecCCCcceEEeccCCCCCCCceEECCCCC
Q 026118          131 HGVLLKYDPSTNQTSLVLDGLYFANGVALSEDERFLVVCESWKFRCVKHFLKVSGRTDREIFIDNLPGGPDNVNLARDGS  210 (243)
Q Consensus       131 ~g~v~~~~~~~~~~~~~~~~~~~~~gi~~~~dg~~l~v~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~i~~d~~G~  210 (243)
                      .+.|+.+|+.+|+...-........+..+...+..+|++ ..++.|+.+|...+..-............|  +....+|+
T Consensus       437 ~g~l~A~D~~tG~~~W~~~~~~~~~~~~~~t~gg~vf~g-~~dg~l~a~d~~tG~~l~~~~~~~~~~~~p--~~~~~~G~  513 (668)
T 1kv9_A          437 SGALLAWDPVKQKAAWKVPYPTHWNGGTLSTAGNLVFQG-TAAGQMHAYSADKGEALWQFEAQSGIVAAP--MTFELAGR  513 (668)
T ss_dssp             EEEEEEEETTTTEEEEEEEESSSCCCCEEEETTTEEEEE-CTTSEEEEEETTTCCEEEEEECSSCCCSCC--EEEEETTE
T ss_pred             cceEEEEeCCCCcEEEEccCCCCCcCceeEeCCCEEEEE-CCcccchhhhhhcChhheEecCCCCcccCc--eEEEECCE
Confidence            378999999999875433222222333444466668887 567899999976432211111111111122  44456889


Q ss_pred             EEEEEecCC
Q 026118          211 FWISIIKMD  219 (243)
Q Consensus       211 lwv~~~~~~  219 (243)
                      +|++...+.
T Consensus       514 ~yva~~~G~  522 (668)
T 1kv9_A          514 QYVAIMAGW  522 (668)
T ss_dssp             EEEEEEECC
T ss_pred             EEEEEEecC
Confidence            999887663

>2ad6_A Methanol dehydrogenase subunit 1; PQQ configuration, native, oxidoredu; HET: PQQ; 1.50A {Methylophilus methylotrophus} SCOP: b.70.1.1 PDB: 2ad7_A* 2ad8_A* 4aah_A* 1g72_A*

Probab=97.50  E-value=0.022  Score=49.51  Aligned_cols=23  Identities=9%  Similarity=0.254  Sum_probs=17.3

Q ss_pred             CCcEEEEeC------CCcEEEEc-cCCcee
Q 026118           20 NGVLYTATG------DGWIKRMH-PNGTWE   42 (243)
Q Consensus        20 ~g~l~~~~~------~~~i~~~~-~~g~~~   42 (243)
                      ++.+|++..      ++.|+.+| .+|+..
T Consensus       160 ~g~v~vg~~~~~~~~~g~v~a~D~~tG~~~  189 (571)
T 2ad6_A          160 KDTVLMGCSGAELGVRGAVNAFDLKTGELK  189 (571)
T ss_dssp             TTEEEEECBCGGGTCCCEEEEEETTTCCEE
T ss_pred             CCEEEEEecCCccCCCCEEEEEECCCCcEE
Confidence            578998874      67899999 467644

>1yiq_A Quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM; 2.20A {Pseudomonas putida}

Probab=97.50  E-value=0.018  Score=51.26  Aligned_cols=86  Identities=17%  Similarity=0.196  Sum_probs=51.0

Q ss_pred             CceEEEEeCCCCeeEEeeccccccceEEEcCCCCEEEEEEcCCCeEEEEEeecCCCcceEEeccCCCCCCCceEECCCCC
Q 026118          131 HGVLLKYDPSTNQTSLVLDGLYFANGVALSEDERFLVVCESWKFRCVKHFLKVSGRTDREIFIDNLPGGPDNVNLARDGS  210 (243)
Q Consensus       131 ~g~v~~~~~~~~~~~~~~~~~~~~~gi~~~~dg~~l~v~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~i~~d~~G~  210 (243)
                      .+.|+.+|+.+|+............+-.+...+..+|++ ..++.|+.||..++..-..........+.|  +....+|+
T Consensus       454 ~g~l~A~D~~tG~~~W~~~~~~~~~~g~~~tagglvf~g-t~dg~l~a~D~~tG~~lw~~~~~~~~~~~p--~ty~~~G~  530 (689)
T 1yiq_A          454 SGKLIAWDPVKQQAAWEVPYVTIFNGGTLSTAGNLVFEG-SADGRVIAYAADTGEKLWEQPAASGVMAAP--VTYSVDGE  530 (689)
T ss_dssp             EEEEEEEETTTTEEEEEEEESSSCCCCEEEETTTEEEEE-CTTSEEEEEETTTCCEEEEEECSSCCCSCC--EEEEETTE
T ss_pred             ceeEEEEECCCCCeEeEccCCCCccCccceECCCEEEEE-CCCCcEEEEECCCCccceeeeCCCCcccCc--eEEEECCE
Confidence            378999999999876433221112222445566667776 567899999977543211111111111223  66678999


Q ss_pred             EEEEEecCC
Q 026118          211 FWISIIKMD  219 (243)
Q Consensus       211 lwv~~~~~~  219 (243)
                      .||+...+.
T Consensus       531 qyv~~~~G~  539 (689)
T 1yiq_A          531 QYVTFMAGW  539 (689)
T ss_dssp             EEEEEEECC
T ss_pred             EEEEEEecC
Confidence            999987663

>1w6s_A Methanol dehydrogenase subunit 1; anisotropic, electron transfer, oxidoreductase, calcium- binding, methanol utilization, PQQ; HET: PQQ; 1.2A {Methylobacterium extorquens} SCOP: b.70.1.1 PDB: 1h4i_A* 1h4j_A* 2d0v_A* 1lrw_A*

Probab=97.50  E-value=0.034  Score=48.60  Aligned_cols=86  Identities=9%  Similarity=-0.012  Sum_probs=49.8

Q ss_pred             CCceEEEEeCCCCeeEEeec-cccccceEEEcCCCCEEEEEEcCCCeEEEEEeecCCCcceEEeccCCCCCCCceEECCC
Q 026118          130 PHGVLLKYDPSTNQTSLVLD-GLYFANGVALSEDERFLVVCESWKFRCVKHFLKVSGRTDREIFIDNLPGGPDNVNLARD  208 (243)
Q Consensus       130 ~~g~v~~~~~~~~~~~~~~~-~~~~~~gi~~~~dg~~l~v~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~i~~d~~  208 (243)
                      ..+.|+.+|+.+++...-.. ......+... -.+..+|++ ..++.|+.||..++..-............|  +....+
T Consensus       451 ~~G~l~A~D~~tG~~~W~~~~~~~~~~g~~~-tagg~vf~g-t~dg~l~A~D~~tG~~lW~~~l~~g~~~~P--~~y~~~  526 (599)
T 1w6s_A          451 GLGQIKAYNAITGDYKWEKMERFAVWGGTMA-TAGDLVFYG-TLDGYLKARDSDTGDLLWKFKIPSGAIGYP--MTYTHK  526 (599)
T ss_dssp             CCEEEEEECTTTCCEEEEEEESSCCCSBCEE-ETTTEEEEE-CTTSEEEEEETTTCCEEEEEECSSCCCSCC--EEEEET
T ss_pred             CcCeEEEEECCCCCEEeEecCCCCccCcceE-ecCCEEEEE-CCCCeEEEEECCCCCEEEEeeCCCCcEecc--EEEEeC
Confidence            34789999999998654322 2222223222 245557876 457889999977543222211111112223  555678


Q ss_pred             CCEEEEEecCC
Q 026118          209 GSFWISIIKMD  219 (243)
Q Consensus       209 G~lwv~~~~~~  219 (243)
                      |++||+...+.
T Consensus       527 G~qyv~~~~G~  537 (599)
T 1w6s_A          527 GTQYVAIYYGV  537 (599)
T ss_dssp             TEEEEEEEECC
T ss_pred             CEEEEEEEccC
Confidence            99999988774

>2gop_A Trilobed protease; beta propeller, open velcro, hydrolase; 2.00A {Pyrococcus furiosus}

Probab=97.47  E-value=0.0036  Score=50.07  Aligned_cols=115  Identities=15%  Similarity=0.093  Sum_probs=69.4

Q ss_pred             cEEEEe-cCC-cEEEEeccCCCcccCCccEEEcCCCc-EEEEeCCCCCCcccccccccccCCCceEEEEeCCCCeeEEee
Q 026118           72 GLLKVS-EEG-VTVLVSQFNGSQLRFANDVIEASDGS-LYFTVSSTKFTPAEYYLDLVSGEPHGVLLKYDPSTNQTSLVL  148 (243)
Q Consensus        72 gl~~~~-~~g-~~~~~~~~~~~~~~~~~~l~~d~~G~-l~v~~~~~~~~~~~~~~~~~~~~~~g~v~~~~~~~~~~~~~~  148 (243)
                      .|+.++ .++ .+.+         ..+..++++|||+ |.++...             .......||.++.++++.+.+.
T Consensus        44 ~l~~~d~~~~~~~~l---------~~~~~~~~SpDg~~la~~~~~-------------~~~~~~~l~~~~~~~g~~~~l~  101 (347)
T 2gop_A           44 TIVIENLKNNARRFI---------ENATMPRISPDGKKIAFMRAN-------------EEKKVSEIWVADLETLSSKKIL  101 (347)
T ss_dssp             EEEEEETTTCCEEEE---------ESCEEEEECTTSSEEEEEEEE-------------TTTTEEEEEEEETTTTEEEEEE
T ss_pred             eEEEEeCCCCceEEc---------ccCCCeEECCCCCEEEEEEec-------------cCCCcceEEEEECCCCceEEEE
Confidence            477777 455 4433         2344678999997 4444211             0012346999999888877765


Q ss_pred             ccccccceEEEcCCCCEEEEEEcC--------------------------CCeEEEEEeecCCCcceEEeccCCCCCCCc
Q 026118          149 DGLYFANGVALSEDERFLVVCESW--------------------------KFRCVKHFLKVSGRTDREIFIDNLPGGPDN  202 (243)
Q Consensus       149 ~~~~~~~gi~~~~dg~~l~v~~~~--------------------------~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~  202 (243)
                      .... ...++|+|||+.|+++...                          ...|+.+++.++..  .+.+..  + ....
T Consensus       102 ~~~~-~~~~~wspdg~~l~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~d~~~~~~--~~~l~~--~-~~~~  175 (347)
T 2gop_A          102 EAKN-IRSLEWNEDSRKLLIVGFKRREDEDFIFEDDVPAWFDDLGFFDGEKTTFWIFDTESEEV--IEEFEK--P-RFSS  175 (347)
T ss_dssp             EESE-EEEEEECTTSSEEEEEEECCCC---------CCCC---------CEEEEEEEETTTTEE--EEEEEE--E-TTCE
T ss_pred             cCCC-ccceeECCCCCEEEEEEccCCCcCCcEEEcccceeecCcccccCccceEEEEECCCCeE--EeeecC--C-Cccc
Confidence            4333 7789999999988877532                          24688888765321  022221  2 4556


Q ss_pred             eEECCCCCEEEEE
Q 026118          203 VNLARDGSFWISI  215 (243)
Q Consensus       203 i~~d~~G~lwv~~  215 (243)
                      ++++++| +++..
T Consensus       176 ~~~spdg-~~~~~  187 (347)
T 2gop_A          176 GIWHRDK-IVVNV  187 (347)
T ss_dssp             EEEETTE-EEEEE
T ss_pred             ccCCCCe-EEEEE
Confidence            7777888 55544

>2hz6_A Endoplasmic reticulum to nucleus signalling 1 isoform 1 variant; triangular beta-sheet cluster, signaling protein; 3.10A {Homo sapiens}

Probab=97.47  E-value=0.0001  Score=60.58  Aligned_cols=139  Identities=15%  Similarity=0.127  Sum_probs=59.9

Q ss_pred             CCCcEEEEeCCCcEEEEc-cCCceeEecccCCccccceEEccCCCEEEEE-eCCCcEEEEe-cCC-cEEEEe-ccCCCcc
Q 026118           19 GNGVLYTATGDGWIKRMH-PNGTWEDWHQVGSQSLLGLTTTKENNVIIVC-DSQQGLLKVS-EEG-VTVLVS-QFNGSQL   93 (243)
Q Consensus        19 ~~g~l~~~~~~~~i~~~~-~~g~~~~~~~~~~~~~~~i~~~~~g~l~~v~-~~~~gl~~~~-~~g-~~~~~~-~~~~~~~   93 (243)
                      .++.||+++.++.|+.+| .+|+....... .... +..+..+|++ +++ ...+.|+.+| .+| ...... .......
T Consensus         8 ~~~~v~~gs~dg~v~a~d~~tG~~~W~~~~-~~~~-s~p~~~~g~~-~v~~s~dg~l~a~d~~tG~~~w~~~~~~~~~~~   84 (369)
T 2hz6_A            8 PETLLFVSTLDGSLHAVSKRTGSIKWTLKE-DPVL-QVPTHVEEPA-FLPDPNDGSLYTLGSKNNEGLTKLPFTIPELVQ   84 (369)
T ss_dssp             CTTEEEEEETTSEEEEEETTTCCEEEEEEC-CCSC-CCC-----CC-EEECTTTCCEEEC-----CCSEECSCCHHHHHT
T ss_pred             eCCEEEEEcCCCEEEEEECCCCCEEEEecC-CCce-ecceEcCCCE-EEEeCCCCEEEEEECCCCceeeeeeccCccccc
Confidence            367899999889999999 57775532222 2223 3333356666 555 4456689999 566 322111 1000000


Q ss_pred             cCCccEEEcCCCcEEEEeCCCCCCcccccccccccCCCceEEEEeCCCCeeEEeeccccccceEEEcCCCCEEEEEEcCC
Q 026118           94 RFANDVIEASDGSLYFTVSSTKFTPAEYYLDLVSGEPHGVLLKYDPSTNQTSLVLDGLYFANGVALSEDERFLVVCESWK  173 (243)
Q Consensus        94 ~~~~~l~~d~~G~l~v~~~~~~~~~~~~~~~~~~~~~~g~v~~~~~~~~~~~~~~~~~~~~~gi~~~~dg~~l~v~~~~~  173 (243)
                      ..|   ++..++.+|++.                  ..+.|+.+|+++|+........   .....+|+++.+|++. .+
T Consensus        85 ~sp---~~~~~~~v~~g~------------------~dg~v~a~D~~tG~~~w~~~~~---~~~~~~p~~~~v~~~~-~d  139 (369)
T 2hz6_A           85 ASP---CRSSDGILYMGK------------------KQDIWYVIDLLTGEKQQTLSSA---FADSLSPSTSLLYLGR-TE  139 (369)
T ss_dssp             TCS---CC-----CCCCE------------------EEEEEEEECCC-------------------------EEEEE-EE
T ss_pred             cCc---eEecCCEEEEEe------------------CCCEEEEEECCCCcEEEEecCC---CcccccccCCEEEEEe-cC
Confidence            111   222356677653                  2357999999988765432211   1233445667688774 34


Q ss_pred             CeEEEEEeecCC
Q 026118          174 FRCVKHFLKVSG  185 (243)
Q Consensus       174 ~~i~~~~~~~~~  185 (243)
                      +.|+.+|...+.
T Consensus       140 g~v~a~d~~tG~  151 (369)
T 2hz6_A          140 YTITMYDTKTRE  151 (369)
T ss_dssp             EEEECCCSSSSS
T ss_pred             CEEEEEECCCCC
Confidence            678888876543

>1kb0_A Quinohemoprotein alcohol dehydrogenase; beta-propeller fold, cytochrome C, oxidoreductase; HET: TRO HEC PQQ; 1.44A {Comamonas testosteroni} SCOP: a.3.1.6 b.70.1.1

Probab=97.45  E-value=0.0049  Score=54.72  Aligned_cols=112  Identities=13%  Similarity=0.172  Sum_probs=63.9

Q ss_pred             CCcEEEEeCCCcEEEEc-cCCceeEecccCCc-----------cccceEEccCCCEEEEEeCCCcEEEEe-cCC-cEEEE
Q 026118           20 NGVLYTATGDGWIKRMH-PNGTWEDWHQVGSQ-----------SLLGLTTTKENNVIIVCDSQQGLLKVS-EEG-VTVLV   85 (243)
Q Consensus        20 ~g~l~~~~~~~~i~~~~-~~g~~~~~~~~~~~-----------~~~~i~~~~~g~l~~v~~~~~gl~~~~-~~g-~~~~~   85 (243)
                      +|.||+++.++.|+.+| .+|+..........           ...+++++ ++++ |++.....|+.+| .+| ...-.
T Consensus        77 ~g~vyv~~~~~~v~AlD~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~a~~-~~~v-~v~~~dg~l~alD~~tG~~~W~~  154 (677)
T 1kb0_A           77 DGIMYVSASWSVVHAIDTRTGNRIWTYDPQIDRSTGFKGCCDVVNRGVALW-KGKV-YVGAWDGRLIALDAATGKEVWHQ  154 (677)
T ss_dssp             TTEEEEECGGGCEEEEETTTTEEEEEECCCCCGGGGGGSSSCSCCCCCEEE-TTEE-EEECTTSEEEEEETTTCCEEEEE
T ss_pred             CCEEEEECCCCeEEEEECCCCcEEEEEcCCCCccccccccccCCCCCceEE-CCEE-EEEcCCCEEEEEECCCCCEEeee
Confidence            67899998888999999 56765432211110           11145553 4555 8988777899999 788 43322


Q ss_pred             ecc-CCCc-ccCCccEEEcCCCcEEEEeCCCCCCcccccccccccCCCceEEEEeCCCCeeEE
Q 026118           86 SQF-NGSQ-LRFANDVIEASDGSLYFTVSSTKFTPAEYYLDLVSGEPHGVLLKYDPSTNQTSL  146 (243)
Q Consensus        86 ~~~-~~~~-~~~~~~l~~d~~G~l~v~~~~~~~~~~~~~~~~~~~~~~g~v~~~~~~~~~~~~  146 (243)
                      ... .... ........+ .++.+|++....++            ...+.|+.+|..+|+...
T Consensus       155 ~~~~~~~~~~~~~~~p~v-~~~~v~v~~~~~~~------------~~~g~v~a~D~~tG~~~W  204 (677)
T 1kb0_A          155 NTFEGQKGSLTITGAPRV-FKGKVIIGNGGAEY------------GVRGYITAYDAETGERKW  204 (677)
T ss_dssp             ETTTTCCSSCBCCSCCEE-ETTEEEECCBCTTT------------CCBCEEEEEETTTCCEEE
T ss_pred             cCCcCcCcCcccccCcEE-ECCEEEEEeccccc------------CCCCEEEEEECCCCcEEE
Confidence            211 1000 011111123 25788887543111            124689999999887654

>2j04_B YDR362CP, TAU91; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae}

Probab=97.44  E-value=0.005  Score=52.92  Aligned_cols=178  Identities=7%  Similarity=-0.044  Sum_probs=97.1

Q ss_pred             cccEEEcCC------CcEE-EEeCCCcEEEEcc-CCcee------------EecccCCccccceEEccCCCEEEEEeCCC
Q 026118           12 PEDVSVDGN------GVLY-TATGDGWIKRMHP-NGTWE------------DWHQVGSQSLLGLTTTKENNVIIVCDSQQ   71 (243)
Q Consensus        12 p~~i~~d~~------g~l~-~~~~~~~i~~~~~-~g~~~------------~~~~~~~~~~~~i~~~~~g~l~~v~~~~~   71 (243)
                      ..++++.++      +.+. .+..++.|..++. .+...            .+... ..+..++++++++.+ .++..++
T Consensus       210 V~~v~wsp~~~~~~~~~~LAs~s~DgtvrlWd~~~~~~~~~~~~~~~~p~~~l~~h-~~~v~sv~~s~~~~l-asgs~Dg  287 (524)
T 2j04_B          210 VWDLKWHEGCHAPHLVGCLSFVSQEGTINFLEIIDNATDVHVFKMCEKPSLTLSLA-DSLITTFDFLSPTTV-VCGFKNG  287 (524)
T ss_dssp             EEEEEECSSCCCSSSSCEEEEEETTSCEEEEECCCCSSSSSEEECCCSCSEEECCT-TTCEEEEEESSSSEE-EEEETTS
T ss_pred             EEEEEECCCCCCCCCCceEEEEecCCeEEEEEcCCCccccccceeecCceEEEEcC-CCCEEEEEecCCCeE-EEEeCCC
Confidence            446777764      3444 4557888988883 33210            11111 122337888776544 7776555


Q ss_pred             cEEEEe-cCC-c--EEEEeccCCCcccCCccE--EEcCCC-cEEEEeCCCCCCcccccccccccCCCceEEEEeCCCCee
Q 026118           72 GLLKVS-EEG-V--TVLVSQFNGSQLRFANDV--IEASDG-SLYFTVSSTKFTPAEYYLDLVSGEPHGVLLKYDPSTNQT  144 (243)
Q Consensus        72 gl~~~~-~~g-~--~~~~~~~~~~~~~~~~~l--~~d~~G-~l~v~~~~~~~~~~~~~~~~~~~~~~g~v~~~~~~~~~~  144 (243)
                      -|..+| .++ .  ..+..     ....+.+|  +..++| +++++.+                 ..+.|..+|..+++.
T Consensus       288 tV~lWD~~~~~~~~~~~~~-----H~~~V~sv~~~~s~~g~~~laS~S-----------------~D~tvklWD~~~~~~  345 (524)
T 2j04_B          288 FVAEFDLTDPEVPSFYDQV-----HDSYILSVSTAYSDFEDTVVSTVA-----------------VDGYFYIFNPKDIAT  345 (524)
T ss_dssp             EEEEEETTBCSSCSEEEEC-----SSSCEEEEEEECCTTSCCEEEEEE-----------------TTSEEEEECGGGHHH
T ss_pred             EEEEEECCCCCCceEEeec-----ccccEEEEEEEcCCCCCeEEEEec-----------------cCCeEEEEECCCCCc
Confidence            577777 444 2  22221     11345666  346777 7777643                 235677777764432


Q ss_pred             EE-eeccc--cccceEEEcCCCCEEEEEEcCCCeEEEEEeecCCCcceEEeccCCCCCCCceEECCCCCEEEEEec
Q 026118          145 SL-VLDGL--YFANGVALSEDERFLVVCESWKFRCVKHFLKVSGRTDREIFIDNLPGGPDNVNLARDGSFWISIIK  217 (243)
Q Consensus       145 ~~-~~~~~--~~~~gi~~~~dg~~l~v~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~i~~d~~G~lwv~~~~  217 (243)
                      .. +....  .....++|+|+++ .+++...++.|..++.......  ..+. .-.+....++++++|++.++...
T Consensus       346 ~~~~~~~~~~~~v~~v~fsp~~~-~l~s~~~d~tv~lwd~~~~~~~--~~l~-gH~~~V~sva~Sp~g~~l~Sgs~  417 (524)
T 2j04_B          346 TKTTVSRFRGSNLVPVVYCPQIY-SYIYSDGASSLRAVPSRAAFAV--HPLV-SRETTITAIGVSRLHPMVLAGSA  417 (524)
T ss_dssp             HCEEEEECSCCSCCCEEEETTTT-EEEEECSSSEEEEEETTCTTCC--EEEE-ECSSCEEEEECCSSCCBCEEEET
T ss_pred             ccccccccccCcccceEeCCCcC-eEEEeCCCCcEEEEECcccccc--eeee-cCCCceEEEEeCCCCCeEEEEEC
Confidence            21 11111  1246799999999 5566566778888887543211  1121 12234556788888875554433

>2ovr_B FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40 domains, double phosphorylation, transcription-C complex; HET: TPO; 2.50A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1 PDB: 2ovp_B* 2ovq_B*

Probab=97.39  E-value=0.026  Score=46.86  Aligned_cols=144  Identities=13%  Similarity=0.064  Sum_probs=78.2

Q ss_pred             cEEEcCCC-cEEEEeCCCcEEEEc-cCCceeE-ecccCCccccceEEccCCCEEEEEeCCCcEEEEe-cCC-cEEEEecc
Q 026118           14 DVSVDGNG-VLYTATGDGWIKRMH-PNGTWED-WHQVGSQSLLGLTTTKENNVIIVCDSQQGLLKVS-EEG-VTVLVSQF   88 (243)
Q Consensus        14 ~i~~d~~g-~l~~~~~~~~i~~~~-~~g~~~~-~~~~~~~~~~~i~~~~~g~l~~v~~~~~gl~~~~-~~g-~~~~~~~~   88 (243)
                      ++.+  ++ .++++..++.|..++ .+++... +........ .+.+  ++++++++..++.|..++ .++ ........
T Consensus       284 ~~~~--~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~v~-~~~~--~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~  358 (445)
T 2ovr_B          284 SLQF--DGIHVVSGSLDTSIRVWDVETGNCIHTLTGHQSLTS-GMEL--KDNILVSGNADSTVKIWDIKTGQCLQTLQGP  358 (445)
T ss_dssp             EEEE--CSSEEEEEETTSCEEEEETTTCCEEEEECCCCSCEE-EEEE--ETTEEEEEETTSCEEEEETTTCCEEEEECST
T ss_pred             EEEE--CCCEEEEEeCCCeEEEEECCCCCEEEEEcCCcccEE-EEEE--eCCEEEEEeCCCeEEEEECCCCcEEEEEccC
Confidence            4445  33 466666778888888 3444332 221111122 3444  456646666555677888 555 22211111


Q ss_pred             CCCcccCCccEEEcCCCcEEEEeCCCCCCcccccccccccCCCceEEEEeCCCCeeEEee------ccccccceEEEcCC
Q 026118           89 NGSQLRFANDVIEASDGSLYFTVSSTKFTPAEYYLDLVSGEPHGVLLKYDPSTNQTSLVL------DGLYFANGVALSED  162 (243)
Q Consensus        89 ~~~~~~~~~~l~~d~~G~l~v~~~~~~~~~~~~~~~~~~~~~~g~v~~~~~~~~~~~~~~------~~~~~~~gi~~~~d  162 (243)
                      . .....+.+++++  ++++++.+                 ..+.|..+|..+++.....      ........++++|+
T Consensus       359 ~-~~~~~v~~~~~~--~~~l~s~~-----------------~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~  418 (445)
T 2ovr_B          359 N-KHQSAVTCLQFN--KNFVITSS-----------------DDGTVKLWDLKTGEFIRNLVTLESGGSGGVVWRIRASNT  418 (445)
T ss_dssp             T-SCSSCEEEEEEC--SSEEEEEE-----------------TTSEEEEEETTTCCEEEEEEECTTGGGTCEEEEEEECSS
T ss_pred             C-CCCCCEEEEEEC--CCEEEEEe-----------------CCCeEEEEECCCCceeeeeeccccCCCCceEEEEEecCC
Confidence            1 112344566664  45555422                 2467888898877654432      12234578999999


Q ss_pred             CCEEEEEEcCCCe----EEEEEeec
Q 026118          163 ERFLVVCESWKFR----CVKHFLKV  183 (243)
Q Consensus       163 g~~l~v~~~~~~~----i~~~~~~~  183 (243)
                      +..+.++. .++.    |..+|.+.
T Consensus       419 ~~~la~~~-~dg~~~~~l~v~df~~  442 (445)
T 2ovr_B          419 KLVCAVGS-RNGTEETKLLVLDFDV  442 (445)
T ss_dssp             EEEEEEEC-SSSSSCCEEEEEECCC
T ss_pred             EEEEEEcc-cCCCCccEEEEEECCC
Confidence            98555553 4444    88888754

>2oit_A Nucleoporin 214KDA; NH2 terminal domain of NUP214/CAN, X-RAY crystallography, beta-propeller, structure, mRNA export, NPC assembly, leukemia; HET: MES; 1.65A {Homo sapiens} PDB: 3fmo_A* 3fmp_A* 3fhc_A

Probab=97.35  E-value=0.024  Score=47.40  Aligned_cols=150  Identities=12%  Similarity=0.090  Sum_probs=84.9

Q ss_pred             cccEEEcCCCcEEE----Ee-CCCcEEEEcc-CC-----c----eeEecc---cCCccccceEEccC-CCEEEEEeCCCc
Q 026118           12 PEDVSVDGNGVLYT----AT-GDGWIKRMHP-NG-----T----WEDWHQ---VGSQSLLGLTTTKE-NNVIIVCDSQQG   72 (243)
Q Consensus        12 p~~i~~d~~g~l~~----~~-~~~~i~~~~~-~g-----~----~~~~~~---~~~~~~~~i~~~~~-g~l~~v~~~~~g   72 (243)
                      ..++++.++|.+.+    +. .++.|..++. .+     +    +..+..   ...... +++++++ ++++..+..++.
T Consensus        95 v~~l~~spdg~~lav~~~sgs~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~h~~~V~-~v~~~p~~~~~las~s~Dg~  173 (434)
T 2oit_A           95 IHHLALSCDNLTLSACMMSSEYGSIIAFFDVRTFSNEAKQQKRPFAYHKLLKDAGGMVI-DMKWNPTVPSMVAVCLADGS  173 (434)
T ss_dssp             EEEEEECTTSCEEEEEEEETTTEEEEEEEEHHHHHCTTCSSCCCSEEEECCCSGGGSEE-EEEECSSCTTEEEEEETTSC
T ss_pred             ccEEEEcCCCCEEEEEEeccCCCceEEEEEccccccCCcCCcceeeeeeccCCCCCceE-EEEECCCCCCEEEEEECCCe
Confidence            66789999886554    33 5777888872 21     1    111111   112234 8899987 777455665556


Q ss_pred             EEEEe-cCCcEEEEeccCCCcccCCccEEEcCCCcEEEEeCCCCCCcccccccccccCCCceEEEEeCCCCeeEE-eecc
Q 026118           73 LLKVS-EEGVTVLVSQFNGSQLRFANDVIEASDGSLYFTVSSTKFTPAEYYLDLVSGEPHGVLLKYDPSTNQTSL-VLDG  150 (243)
Q Consensus        73 l~~~~-~~g~~~~~~~~~~~~~~~~~~l~~d~~G~l~v~~~~~~~~~~~~~~~~~~~~~~g~v~~~~~~~~~~~~-~~~~  150 (243)
                      |..+| .++.......  + ....+.+++++++|++.++.+                 ..+.|..+|.. ++... +...
T Consensus       174 v~iwD~~~~~~~~~~~--~-~~~~v~~v~wspdg~~lasgs-----------------~dg~v~iwd~~-~~~~~~~~~~  232 (434)
T 2oit_A          174 IAVLQVTETVKVCATL--P-STVAVTSVCWSPKGKQLAVGK-----------------QNGTVVQYLPT-LQEKKVIPCP  232 (434)
T ss_dssp             EEEEEESSSEEEEEEE--C-GGGCEEEEEECTTSSCEEEEE-----------------TTSCEEEECTT-CCEEEEECCC
T ss_pred             EEEEEcCCCcceeecc--C-CCCceeEEEEcCCCCEEEEEc-----------------CCCcEEEEccC-CcccccccCC
Confidence            77888 6662221111  1 123567899999997655522                 23578888887 44332 2111


Q ss_pred             c-------cccceEEEcCCCCEEEEEEcCC------CeEEEEEeec
Q 026118          151 L-------YFANGVALSEDERFLVVCESWK------FRCVKHFLKV  183 (243)
Q Consensus       151 ~-------~~~~gi~~~~dg~~l~v~~~~~------~~i~~~~~~~  183 (243)
                      .       .....+.+++++.++.+....+      ..+..+++..
T Consensus       233 ~~~~~~~~~~v~~v~w~~~~~~l~~~~~~dg~~~~~~~v~i~~l~~  278 (434)
T 2oit_A          233 PFYESDHPVRVLDVLWIGTYVFAIVYAAADGTLETSPDVVMALLPK  278 (434)
T ss_dssp             TTCCTTSCEEEEEEEEEETTEEEEEEEETTCCSSSCCEEEEEECCC
T ss_pred             cccCCCCceeEEEEEEecCceEEEEEccCCCccCCCCceEEEEecc
Confidence            1       1346788888776444433332      2366677653

>4gq1_A NUP37; propeller, transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4gq2_P 4fhl_A 4fhm_A 4fhn_A

Probab=97.35  E-value=0.033  Score=45.63  Aligned_cols=188  Identities=11%  Similarity=-0.020  Sum_probs=90.2

Q ss_pred             cccEEEcC--------CCcEEEE-eCCCcEEEEc-cCCc-eeEecccCCccccceEEccCCC-EEEEEeCCCcEEEEe-c
Q 026118           12 PEDVSVDG--------NGVLYTA-TGDGWIKRMH-PNGT-WEDWHQVGSQSLLGLTTTKENN-VIIVCDSQQGLLKVS-E   78 (243)
Q Consensus        12 p~~i~~d~--------~g~l~~~-~~~~~i~~~~-~~g~-~~~~~~~~~~~~~~i~~~~~g~-l~~v~~~~~gl~~~~-~   78 (243)
                      -.+|++.+        +|.+.++ ..|+.|..+| .++. ............ +++++|++. +|.++..++-+..+| .
T Consensus       139 v~~v~~~p~~~~~~~~d~~~las~s~D~tv~~Wd~~~~~~~~~~~~~~~~v~-~v~~~p~~~~~l~~~~~d~~v~~wd~~  217 (393)
T 4gq1_A          139 VNDIDIADVYSADNRLAEQVIASVGDDCTLIIWRLTDEGPILAGYPLSSPGI-SVQFRPSNPNQLIVGERNGNIRIFDWT  217 (393)
T ss_dssp             EEEEEEEEEECTTCSEEEEEEEEEETTSEEEEEEEETTEEEEEEEECSSCEE-EEEEETTEEEEEEEEETTSEEEEEETT
T ss_pred             eEEEEEccccccccCCCCCEEEEEECCCeEEEEECCCCceeeeecCCCCCcE-EEEECCCCCceEEecCCCCEEEEEECC
Confidence            34567754        6665544 4888899998 3333 333222223334 889999874 535555444466666 4


Q ss_pred             CC-c-EEEEeccC--------------------CCcccCCccEEEc-CCCcEEEEeCCCCCCcccccccccccCCCceEE
Q 026118           79 EG-V-TVLVSQFN--------------------GSQLRFANDVIEA-SDGSLYFTVSSTKFTPAEYYLDLVSGEPHGVLL  135 (243)
Q Consensus        79 ~g-~-~~~~~~~~--------------------~~~~~~~~~l~~d-~~G~l~v~~~~~~~~~~~~~~~~~~~~~~g~v~  135 (243)
                      ++ . ........                    ......+..+.+. ++|+..++.+.                 .+.+.
T Consensus       218 t~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~v~~v~~~~~dg~~l~s~s~-----------------d~~i~  280 (393)
T 4gq1_A          218 LNLSAEENSQTELVKNPWLLTLNTLPLVNTCHSSGIASSLANVRWIGSDGSGILAMCK-----------------SGAWL  280 (393)
T ss_dssp             CCC----------CSCCCSEEEESGGGC------CCSSSCSEEEEETTTTCEEEEECT-----------------TSEEE
T ss_pred             CCcccccccccCCcccceEEecccccceeeeecccccccceeeeeecCCCCEEEEEeC-----------------CCCEE
Confidence            44 1 11110000                    0011233445554 57766655332                 23444


Q ss_pred             EEeCCCCeeEE-ee------------------ccccccceEEEc-CCCCEEEEEEcCCCeEEEEEeecCCCcceEEeccC
Q 026118          136 KYDPSTNQTSL-VL------------------DGLYFANGVALS-EDERFLVVCESWKFRCVKHFLKVSGRTDREIFIDN  195 (243)
Q Consensus       136 ~~~~~~~~~~~-~~------------------~~~~~~~gi~~~-~dg~~l~v~~~~~~~i~~~~~~~~~~~~~~~~~~~  195 (243)
                      .+|..+++... +.                  .......+..++ +.++.+.++...++.|..++...+.... ...  .
T Consensus       281 vwd~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sgs~Dg~V~lwd~~~~~~~~-~~~--~  357 (393)
T 4gq1_A          281 RWNLFANNDYNEISDSTMKLGPKNLLPNVQGISLFPSLLGACPHPRYMDYFATAHSQHGLIQLINTYEKDSNS-IPI--Q  357 (393)
T ss_dssp             EEEC-------------------CCSCSEEEECSSCCSSCCEECSSCTTEEEEEETTTTEEEEEETTCTTCCE-EEE--E
T ss_pred             EEECccCCCCceEeeecCccccEEEccccccccccCcceeEEEccCCCCEEEEEECCCCEEEEEECCCCcEEE-Eec--C
Confidence            44544322111 00                  001111223333 3455455556667899999986532211 111  1


Q ss_pred             CCCCCCceEECCCCCEEEEEecCCc
Q 026118          196 LPGGPDNVNLARDGSFWISIIKMDP  220 (243)
Q Consensus       196 ~~~~~~~i~~d~~G~lwv~~~~~~~  220 (243)
                      .......++++++|++++...+++.
T Consensus       358 ~~~~V~svafspdG~~LA~as~~Gv  382 (393)
T 4gq1_A          358 LGMPIVDFCWHQDGSHLAIATEGSV  382 (393)
T ss_dssp             CSSCEEEEEECTTSSEEEEEESSEE
T ss_pred             CCCcEEEEEEcCCCCEEEEEeCCCe
Confidence            1223567999999997666555543

>4gga_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; 2.04A {Homo sapiens} PDB: 4ggd_A

Probab=97.33  E-value=0.049  Score=44.91  Aligned_cols=144  Identities=13%  Similarity=0.003  Sum_probs=83.9

Q ss_pred             EEEcCCCcEEEEeCCCcEEEEc-cCCceeEeccc--CCccccceEEccCCCEEEEEeCCCcEEEEe-cCC-cEEEEeccC
Q 026118           15 VSVDGNGVLYTATGDGWIKRMH-PNGTWEDWHQV--GSQSLLGLTTTKENNVIIVCDSQQGLLKVS-EEG-VTVLVSQFN   89 (243)
Q Consensus        15 i~~d~~g~l~~~~~~~~i~~~~-~~g~~~~~~~~--~~~~~~~i~~~~~g~l~~v~~~~~gl~~~~-~~g-~~~~~~~~~   89 (243)
                      |.+.+++.|-++ .++.|+.++ .+|+.......  ......+++++++|++|.++..++.|..++ .++ .....   .
T Consensus       111 l~wS~~n~lAvg-ld~tV~lWd~~tg~~~~~~~~~~~~~~V~sv~fspdg~~lasgs~Dg~v~iWd~~~~~~~~~~---~  186 (420)
T 4gga_A          111 VDWSSGNVLAVA-LDNSVYLWSASSGDILQLLQMEQPGEYISSVAWIKEGNYLAVGTSSAEVQLWDVQQQKRLRNM---T  186 (420)
T ss_dssp             EEECTTSEEEEE-ETTEEEEEETTTCCEEEEEECCSTTCCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEE---C
T ss_pred             EEECCCCEEEEE-eCCEEEEEECCCCCEEEEEEecCCCCcEEEEEECCCCCEEEEEECCCeEEEEEcCCCcEEEEE---e
Confidence            555555545455 478899999 56665443221  122333899999999867777666677788 666 22211   1


Q ss_pred             CCcccCCccEEEcCCCcEEEEeCCCCCCcccccccccccCCCceEEEEeCCCCe--eEEeeccccccceEEEcCCCCEEE
Q 026118           90 GSQLRFANDVIEASDGSLYFTVSSTKFTPAEYYLDLVSGEPHGVLLKYDPSTNQ--TSLVLDGLYFANGVALSEDERFLV  167 (243)
Q Consensus        90 ~~~~~~~~~l~~d~~G~l~v~~~~~~~~~~~~~~~~~~~~~~g~v~~~~~~~~~--~~~~~~~~~~~~gi~~~~dg~~l~  167 (243)
                      +. ...+.+  +..++.+.++.+                 ..+.+..++.....  ...+.........+.++++++.+.
T Consensus       187 ~h-~~~v~~--~s~~~~~l~sgs-----------------~d~~i~~~d~~~~~~~~~~~~~h~~~~~~~~~~~~g~~l~  246 (420)
T 4gga_A          187 SH-SARVGS--LSWNSYILSSGS-----------------RSGHIHHHDVRVAEHHVATLSGHSQEVCGLRWAPDGRHLA  246 (420)
T ss_dssp             CC-SSCEEE--EEEETTEEEEEE-----------------TTSEEEEEETTSSSCEEEEEECCSSCEEEEEECTTSSEEE
T ss_pred             CC-CCceEE--EeeCCCEEEEEe-----------------CCCceeEeeecccceeeEEecccccceeeeeecCCCCeee
Confidence            11 112223  344566665532                 23456666655332  222333345567899999999555


Q ss_pred             EEEcCCCeEEEEEeec
Q 026118          168 VCESWKFRCVKHFLKV  183 (243)
Q Consensus       168 v~~~~~~~i~~~~~~~  183 (243)
                      .. ..++.+..++...
T Consensus       247 s~-~~D~~v~i~~~~~  261 (420)
T 4gga_A          247 SG-GNDNLVNVWPSAP  261 (420)
T ss_dssp             EE-ETTSCEEEEESSC
T ss_pred             ee-eccccceEEeecc
Confidence            44 5677888888764

>2xdw_A Prolyl endopeptidase; alpha/beta-hydrolase, amnesia, beta-propeller, hydrolase, in; HET: PHQ TAM; 1.35A {Sus scrofa} PDB: 1qfm_A 1qfs_A* 1h2w_A* 3eq7_A* 3eq8_A* 3eq9_A* 1e8m_A* 1e8n_A 1h2z_A 1uoo_A 1uop_A 1uoq_A 1o6f_A 1h2x_A 1h2y_A* 1o6g_A 1vz3_A 1e5t_A 1vz2_A 3ddu_A*

Probab=97.20  E-value=0.02  Score=50.83  Aligned_cols=145  Identities=14%  Similarity=0.035  Sum_probs=77.9

Q ss_pred             cCCCEEEEEeCCC-----cEEEEe-cCC-cEEEEeccC--CCcccCCccEEEcCCCcEE-EEeCCCCCCccccccccccc
Q 026118           59 KENNVIIVCDSQQ-----GLLKVS-EEG-VTVLVSQFN--GSQLRFANDVIEASDGSLY-FTVSSTKFTPAEYYLDLVSG  128 (243)
Q Consensus        59 ~~g~l~~v~~~~~-----gl~~~~-~~g-~~~~~~~~~--~~~~~~~~~l~~d~~G~l~-v~~~~~~~~~~~~~~~~~~~  128 (243)
                      ++|+.++......     -+++.+ .++ .+.+.....  ........+++++|||+.. ++.+.             .+
T Consensus        81 ~dG~~~~~~~~~~~~~~~~l~~~~~~~~~~~~lld~~~l~~~~~~~~~~~~~SPDg~~la~~~~~-------------~G  147 (710)
T 2xdw_A           81 KKGKRYFYFYNTGLQNQRVLYVQDSLEGEARVFLDPNILSDDGTVALRGYAFSEDGEYFAYGLSA-------------SG  147 (710)
T ss_dssp             EETTEEEEEEECSSCSSCEEEEESSTTSCCEEEECGGGGCTTSCEEEEEEEECTTSSEEEEEEEE-------------TT
T ss_pred             EECCEEEEEEEcCCceEEEEEEEcCCCCCcEEEECHHHhccCCCEEEEEEEECCCCCEEEEEEcC-------------CC
Confidence            7787634333211     356776 445 544433111  1111134577899999844 33211             01


Q ss_pred             CCCceEEEEeCCCCeeEEeeccccccceEEEcCCCCEEEEEEcCC---------------CeEEEEEeecCCCcceEEec
Q 026118          129 EPHGVLLKYDPSTNQTSLVLDGLYFANGVALSEDERFLVVCESWK---------------FRCVKHFLKVSGRTDREIFI  193 (243)
Q Consensus       129 ~~~g~v~~~~~~~~~~~~~~~~~~~~~gi~~~~dg~~l~v~~~~~---------------~~i~~~~~~~~~~~~~~~~~  193 (243)
                      .....|+.+|.++++............+++|+|||+.|+++....               ..|+++++.++......++.
T Consensus       148 ~~~~~i~v~d~~tg~~~~~~~~~~~~~~~~wspDg~~l~~~~~~~~~~~~~~~~~~~~~~~~v~~~~l~t~~~~~~~v~~  227 (710)
T 2xdw_A          148 SDWVTIKFMKVDGAKELPDVLERVKFSCMAWTHDGKGMFYNAYPQQDGKSDGTETSTNLHQKLYYHVLGTDQSEDILCAE  227 (710)
T ss_dssp             CSCEEEEEEETTTTEEEEEEEEEECSCCEEECTTSSEEEEEECCCCSSCCSSSCCCCCCCCEEEEEETTSCGGGCEEEEC
T ss_pred             CceEEEEEEECCCCCCCcccccCcccceEEEEeCCCEEEEEEECCccccccccccccCCCCEEEEEECCCCcccceEEec
Confidence            112379999999888765432222246799999999888875432               24888887543221122222


Q ss_pred             cC-CCCCCCceEECCCCC-EEEEEe
Q 026118          194 DN-LPGGPDNVNLARDGS-FWISII  216 (243)
Q Consensus       194 ~~-~~~~~~~i~~d~~G~-lwv~~~  216 (243)
                      .. .+....+++++++|+ |.++..
T Consensus       228 ~~~~~~~~~~~~~SpDg~~l~~~~~  252 (710)
T 2xdw_A          228 FPDEPKWMGGAELSDDGRYVLLSIR  252 (710)
T ss_dssp             CTTCTTCEEEEEECTTSCEEEEEEE
T ss_pred             cCCCCeEEEEEEEcCCCCEEEEEEE
Confidence            11 122334677888887 444443

>1w6s_A Methanol dehydrogenase subunit 1; anisotropic, electron transfer, oxidoreductase, calcium- binding, methanol utilization, PQQ; HET: PQQ; 1.2A {Methylobacterium extorquens} SCOP: b.70.1.1 PDB: 1h4i_A* 1h4j_A* 2d0v_A* 1lrw_A*

Probab=97.18  E-value=0.024  Score=49.51  Aligned_cols=112  Identities=14%  Similarity=0.117  Sum_probs=63.7

Q ss_pred             CCcEEEEeC-CCcEEEEcc--CCceeEecccCCc-----------cccceEEc-cCCC----EEEEEeCCCcEEEEe-cC
Q 026118           20 NGVLYTATG-DGWIKRMHP--NGTWEDWHQVGSQ-----------SLLGLTTT-KENN----VIIVCDSQQGLLKVS-EE   79 (243)
Q Consensus        20 ~g~l~~~~~-~~~i~~~~~--~g~~~~~~~~~~~-----------~~~~i~~~-~~g~----l~~v~~~~~gl~~~~-~~   79 (243)
                      +++||+++. ++.|+.+|.  +|+..-.......           ...++++. .+++    + |+++....|+.+| .+
T Consensus        62 ~g~vyv~~~~~~~v~AlD~~~tG~~lW~~~~~~~~~~~~~~~~~~~~~g~av~p~~g~~~~rV-~v~t~dg~l~AlDa~T  140 (599)
T 1w6s_A           62 DGKMYIHTSFPNNTFALGLDDPGTILWQDKPKQNPAARAVACCDLVNRGLAYWPGDGKTPALI-LKTQLDGNVAALNAET  140 (599)
T ss_dssp             TTEEEEECSTTTCEEEEETTCTTSEEEEECCCCCGGGGGGCSSCSCCCCCEEECCCSSSCCEE-EEECTTSEEEEEETTT
T ss_pred             CCEEEEEeCCCCEEEEEeCCCCCcEEEEECCCCCccccccccccccccceEEEecCCcceeEE-EEEcCCCEEEEEECCC
Confidence            678999987 789999996  6765432211110           11245663 2445    6 8988777899999 78


Q ss_pred             C-cEEEEeccCCCc--ccCCccEEEcCCCcEEEEeCCCCCCcccccccccccCCCceEEEEeCCCCeeEE
Q 026118           80 G-VTVLVSQFNGSQ--LRFANDVIEASDGSLYFTVSSTKFTPAEYYLDLVSGEPHGVLLKYDPSTNQTSL  146 (243)
Q Consensus        80 g-~~~~~~~~~~~~--~~~~~~l~~d~~G~l~v~~~~~~~~~~~~~~~~~~~~~~g~v~~~~~~~~~~~~  146 (243)
                      | ...-.. .....  .......++ .+|.+|++....++            ...+.|+.+|.++|+...
T Consensus       141 G~~~W~~~-~~~~~~~~~~~ssP~v-~~g~V~vg~~g~e~------------g~~g~v~A~D~~TG~~~W  196 (599)
T 1w6s_A          141 GETVWKVE-NSDIKVGSTLTIAPYV-VKDKVIIGSSGAEL------------GVRGYLTAYDVKTGEQVW  196 (599)
T ss_dssp             CCEEEEEE-CCCGGGTCBCCSCCEE-ETTEEEECCBCGGG------------TCCCEEEEEETTTCCEEE
T ss_pred             CCEEEeec-CCCCCccceeecCCEE-ECCEEEEEeccccc------------CCCCeEEEEECCCCcEEE
Confidence            8 333222 11100  001111122 25788887532111            124689999999887653

>4a9v_A PHOX; hydrolase, beta-propeller; 1.10A {Pseudomonas fluorescens} PDB: 3zwu_A 4a9x_A*

Probab=97.15  E-value=0.0012  Score=56.64  Aligned_cols=60  Identities=18%  Similarity=0.352  Sum_probs=47.5

Q ss_pred             ccCCcccEEEcCCCcEEEEeCC-------------CcEEEEcc-CCceeEeccc--CCccccceEEccCCCEEEEEe
Q 026118            8 IVNHPEDVSVDGNGVLYTATGD-------------GWIKRMHP-NGTWEDWHQV--GSQSLLGLTTTKENNVIIVCD   68 (243)
Q Consensus         8 ~~~~p~~i~~d~~g~l~~~~~~-------------~~i~~~~~-~g~~~~~~~~--~~~~~~~i~~~~~g~l~~v~~   68 (243)
                      +|..|..|++|++|.||++++.             ..++++++ .|+++.+...  ...++ |++++||++.|||+.
T Consensus       474 ~fnsPDnL~fd~~G~LWf~TD~~~~~~g~~~~~gnn~v~~~dp~tGel~~fl~~P~~aEpn-GiafSPD~ktLfV~v  549 (592)
T 4a9v_A          474 MFNSPDGLGFDKAGRLWILTDGDSSNAGDFAGMGNNQMLCADPATGEIRRFMVGPIGCEVT-GISFSPDQKTLFVGI  549 (592)
T ss_dssp             CCCCEEEEEECTTCCEEEEECCCCCCSGGGTTCCSCEEEEECTTTCCEEEEEECCTTCEEE-EEEECTTSSEEEEEE
T ss_pred             ccCCCCceEECCCCCEEEEeCCCcCccccccccCCceEEEEeCCCCeEEEEEeCCCCcccc-CCEECCCCCEEEEEE
Confidence            5889999999999999996522             27899996 6888777542  23567 999999999878875

>2ovr_B FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40 domains, double phosphorylation, transcription-C complex; HET: TPO; 2.50A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1 PDB: 2ovp_B* 2ovq_B*

Probab=97.13  E-value=0.085  Score=43.68  Aligned_cols=170  Identities=11%  Similarity=0.039  Sum_probs=89.1

Q ss_pred             cEEEcCCCcEEEEeCCCcEEEEcc-CCcee-EecccCCccccceEEccCCCEEEEEeCCCcEEEEe-cCC-cEEEEeccC
Q 026118           14 DVSVDGNGVLYTATGDGWIKRMHP-NGTWE-DWHQVGSQSLLGLTTTKENNVIIVCDSQQGLLKVS-EEG-VTVLVSQFN   89 (243)
Q Consensus        14 ~i~~d~~g~l~~~~~~~~i~~~~~-~g~~~-~~~~~~~~~~~~i~~~~~g~l~~v~~~~~gl~~~~-~~g-~~~~~~~~~   89 (243)
                      ++.++ ...+.++..++.|..++. .++.. .+........ .+.+  +++.++++..++.+..++ .++ ......   
T Consensus       244 ~~~~~-~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~-~~~~--~~~~l~~~~~d~~i~i~d~~~~~~~~~~~---  316 (445)
T 2ovr_B          244 CVQYD-GRRVVSGAYDFMVKVWDPETETCLHTLQGHTNRVY-SLQF--DGIHVVSGSLDTSIRVWDVETGNCIHTLT---  316 (445)
T ss_dssp             EEEEC-SSCEEEEETTSCEEEEEGGGTEEEEEECCCSSCEE-EEEE--CSSEEEEEETTSCEEEEETTTCCEEEEEC---
T ss_pred             EEEEC-CCEEEEEcCCCEEEEEECCCCcEeEEecCCCCceE-EEEE--CCCEEEEEeCCCeEEEEECCCCCEEEEEc---
Confidence            45552 234666667788888873 33322 2221112223 5566  566656766666677888 555 222111   


Q ss_pred             CCcccCCccEEEcCCCcEEEEeCCCCCCcccccccccccCCCceEEEEeCCCCeeEEeec----cccccceEEEcCCCCE
Q 026118           90 GSQLRFANDVIEASDGSLYFTVSSTKFTPAEYYLDLVSGEPHGVLLKYDPSTNQTSLVLD----GLYFANGVALSEDERF  165 (243)
Q Consensus        90 ~~~~~~~~~l~~d~~G~l~v~~~~~~~~~~~~~~~~~~~~~~g~v~~~~~~~~~~~~~~~----~~~~~~gi~~~~dg~~  165 (243)
                      +. ...+.++..  +++++++.+                 ..+.|..+|..+++......    .......++++  +++
T Consensus       317 ~~-~~~v~~~~~--~~~~l~~~~-----------------~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~--~~~  374 (445)
T 2ovr_B          317 GH-QSLTSGMEL--KDNILVSGN-----------------ADSTVKIWDIKTGQCLQTLQGPNKHQSAVTCLQFN--KNF  374 (445)
T ss_dssp             CC-CSCEEEEEE--ETTEEEEEE-----------------TTSCEEEEETTTCCEEEEECSTTSCSSCEEEEEEC--SSE
T ss_pred             CC-cccEEEEEE--eCCEEEEEe-----------------CCCeEEEEECCCCcEEEEEccCCCCCCCEEEEEEC--CCE
Confidence            11 122334443  455555422                 24578888887666544332    22334567765  564


Q ss_pred             EEEEEcCCCeEEEEEeecCCCcceEEec----cCCCCCCCceEECCCCCEEEEE
Q 026118          166 LVVCESWKFRCVKHFLKVSGRTDREIFI----DNLPGGPDNVNLARDGSFWISI  215 (243)
Q Consensus       166 l~v~~~~~~~i~~~~~~~~~~~~~~~~~----~~~~~~~~~i~~d~~G~lwv~~  215 (243)
                      ++.+ ..++.|..|+...+..  ...+.    ....+....++++++|.+.+..
T Consensus       375 l~s~-~~dg~v~iwd~~~~~~--~~~~~~~~~~~~~~~v~~~~~s~~~~~la~~  425 (445)
T 2ovr_B          375 VITS-SDDGTVKLWDLKTGEF--IRNLVTLESGGSGGVVWRIRASNTKLVCAVG  425 (445)
T ss_dssp             EEEE-ETTSEEEEEETTTCCE--EEEEEECTTGGGTCEEEEEEECSSEEEEEEE
T ss_pred             EEEE-eCCCeEEEEECCCCce--eeeeeccccCCCCceEEEEEecCCEEEEEEc
Confidence            5544 5678999999865422  12221    1122345568888888654443

>1kv9_A Type II quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM EPE; 1.90A {Pseudomonas putida} SCOP: a.3.1.6 b.70.1.1

Probab=97.10  E-value=0.02  Score=50.74  Aligned_cols=112  Identities=13%  Similarity=0.152  Sum_probs=63.7

Q ss_pred             CCcEEEEeCCCcEEEEc-cCCceeEecccCCc-----------cccceEEccCCCEEEEEeCCCcEEEEe-cCC-cEEEE
Q 026118           20 NGVLYTATGDGWIKRMH-PNGTWEDWHQVGSQ-----------SLLGLTTTKENNVIIVCDSQQGLLKVS-EEG-VTVLV   85 (243)
Q Consensus        20 ~g~l~~~~~~~~i~~~~-~~g~~~~~~~~~~~-----------~~~~i~~~~~g~l~~v~~~~~gl~~~~-~~g-~~~~~   85 (243)
                      +|.||+++.++.|+.+| .+|+..........           ...+++++ ++++ |+++....|+.+| .+| ...-.
T Consensus        66 ~g~vyv~~~~~~v~AlD~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~v-~v~~~dg~l~alD~~tG~~~W~~  143 (668)
T 1kv9_A           66 DGVIYTSMSWSRVIAVDAASGKELWRYDPEVAKVKARTSCCDAVNRGVALW-GDKV-YVGTLDGRLIALDAKTGKAIWSQ  143 (668)
T ss_dssp             TTEEEEEEGGGEEEEEETTTCCEEEEECCCCCGGGGGGCTTCSCCCCCEEE-BTEE-EEECTTSEEEEEETTTCCEEEEE
T ss_pred             CCEEEEECCCCeEEEEECCCChhceEECCCCCccccccccccCCccceEEE-CCEE-EEEcCCCEEEEEECCCCCEeeee
Confidence            67899999888999999 57765432211100           01134553 4556 8888777899999 788 33322


Q ss_pred             eccCCC-cccCCccEEEcCCCcEEEEeCCCCCCcccccccccccCCCceEEEEeCCCCeeEE
Q 026118           86 SQFNGS-QLRFANDVIEASDGSLYFTVSSTKFTPAEYYLDLVSGEPHGVLLKYDPSTNQTSL  146 (243)
Q Consensus        86 ~~~~~~-~~~~~~~l~~d~~G~l~v~~~~~~~~~~~~~~~~~~~~~~g~v~~~~~~~~~~~~  146 (243)
                      ...... .........+ .+|.+|++.....+            ...+.|+.+|.++|+...
T Consensus       144 ~~~~~~~~~~~~~~P~v-~~~~v~vg~~~~~~------------~~~g~v~a~D~~tG~~~W  192 (668)
T 1kv9_A          144 QTTDPAKPYSITGAPRV-VKGKVIIGNGGAEY------------GVRGFVSAYDADTGKLAW  192 (668)
T ss_dssp             ECSCTTSSCBCCSCCEE-ETTEEEECCBCTTT------------CCBCEEEEEETTTCCEEE
T ss_pred             ccCCCCCcceecCCCEE-ECCEEEEeCCCCCc------------CCCCEEEEEECCCCcEEE
Confidence            211110 0011111122 26788887533111            134689999999887654

>1yiq_A Quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM; 2.20A {Pseudomonas putida}

Probab=97.04  E-value=0.026  Score=50.18  Aligned_cols=112  Identities=16%  Similarity=0.169  Sum_probs=63.5

Q ss_pred             CCcEEEEeCCCcEEEEc-cCCceeEecccCCc-----------cccceEEccCCCEEEEEeCCCcEEEEe-cCC-cEEEE
Q 026118           20 NGVLYTATGDGWIKRMH-PNGTWEDWHQVGSQ-----------SLLGLTTTKENNVIIVCDSQQGLLKVS-EEG-VTVLV   85 (243)
Q Consensus        20 ~g~l~~~~~~~~i~~~~-~~g~~~~~~~~~~~-----------~~~~i~~~~~g~l~~v~~~~~gl~~~~-~~g-~~~~~   85 (243)
                      +|.||+++.++.|+.+| .+|+..........           ...+++++ ++++ |++.....|+.+| .+| ...-.
T Consensus        70 ~g~vyv~~~~~~v~AlD~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~-~g~v-~v~~~dg~l~AlDa~TG~~~W~~  147 (689)
T 1yiq_A           70 DGVMYTTGPFSVVYALDARDGRLIWKYDPQSDRHRAGEACCDAVNRGVAVW-KGKV-YVGVLDGRLEAIDAKTGQRAWSV  147 (689)
T ss_dssp             TTEEEEECGGGCEEEEETTTCCEEEEECCCCCGGGGGGCTTCSCCCCCEEE-TTEE-EEECTTSEEEEEETTTCCEEEEE
T ss_pred             CCEEEEEcCCCeEEEEECCCCceeEEEcCCCCccccccccccCCCCccEEE-CCEE-EEEccCCEEEEEECCCCCEeeee
Confidence            67899999888899999 57775432211100           01134443 4556 8888777899999 788 33322


Q ss_pred             ecc-CCCc-ccCCccEEEcCCCcEEEEeCCCCCCcccccccccccCCCceEEEEeCCCCeeEE
Q 026118           86 SQF-NGSQ-LRFANDVIEASDGSLYFTVSSTKFTPAEYYLDLVSGEPHGVLLKYDPSTNQTSL  146 (243)
Q Consensus        86 ~~~-~~~~-~~~~~~l~~d~~G~l~v~~~~~~~~~~~~~~~~~~~~~~g~v~~~~~~~~~~~~  146 (243)
                      ... .... ........+ .+|.+|++.+...+            ...+.|+.+|.++|+...
T Consensus       148 ~~~~~~~~~~~~~~sP~v-~~g~v~vg~~~~~~------------~~~g~v~a~D~~tG~~~W  197 (689)
T 1yiq_A          148 DTRADHKRSYTITGAPRV-VNGKVVIGNGGAEF------------GVRGYVTAYDAETGKEAW  197 (689)
T ss_dssp             ECCSCTTSCCBCCSCCEE-ETTEEEECCBCTTT------------CCBCEEEEEETTTCCEEE
T ss_pred             cCcCCCCCCccccCCcEE-ECCEEEEEeCCCcc------------CCCCEEEEEECCCCcEEE
Confidence            211 1100 011111122 26788887543111            134689999999887653

>2oit_A Nucleoporin 214KDA; NH2 terminal domain of NUP214/CAN, X-RAY crystallography, beta-propeller, structure, mRNA export, NPC assembly, leukemia; HET: MES; 1.65A {Homo sapiens} PDB: 3fmo_A* 3fmp_A* 3fhc_A

Probab=96.96  E-value=0.014  Score=48.86  Aligned_cols=111  Identities=10%  Similarity=-0.042  Sum_probs=68.0

Q ss_pred             cccceEEccCCCEEEE---EeCCC-cEEEEe-cCC-------cE---EEEeccCCCcccCCccEEEcCC-CcEEEEeCCC
Q 026118           51 SLLGLTTTKENNVIIV---CDSQQ-GLLKVS-EEG-------VT---VLVSQFNGSQLRFANDVIEASD-GSLYFTVSST  114 (243)
Q Consensus        51 ~~~~i~~~~~g~l~~v---~~~~~-gl~~~~-~~g-------~~---~~~~~~~~~~~~~~~~l~~d~~-G~l~v~~~~~  114 (243)
                      .. .++++++|++|++   +.... .+..++ .++       .+   .+. ...+ ....+.++++.|+ ++++++.+  
T Consensus        95 v~-~l~~spdg~~lav~~~sgs~d~~v~iwd~~~~~~~~~~~~~~~~~~~-~~~~-h~~~V~~v~~~p~~~~~las~s--  169 (434)
T 2oit_A           95 IH-HLALSCDNLTLSACMMSSEYGSIIAFFDVRTFSNEAKQQKRPFAYHK-LLKD-AGGMVIDMKWNPTVPSMVAVCL--  169 (434)
T ss_dssp             EE-EEEECTTSCEEEEEEEETTTEEEEEEEEHHHHHCTTCSSCCCSEEEE-CCCS-GGGSEEEEEECSSCTTEEEEEE--
T ss_pred             cc-EEEEcCCCCEEEEEEeccCCCceEEEEEccccccCCcCCcceeeeee-ccCC-CCCceEEEEECCCCCCEEEEEE--
Confidence            44 8999999998554   23223 355666 321       11   111 1111 1245778999997 77777532  


Q ss_pred             CCCcccccccccccCCCceEEEEeCCCCeeEEe-eccccccceEEEcCCCCEEEEEEcCCCeEEEEEee
Q 026118          115 KFTPAEYYLDLVSGEPHGVLLKYDPSTNQTSLV-LDGLYFANGVALSEDERFLVVCESWKFRCVKHFLK  182 (243)
Q Consensus       115 ~~~~~~~~~~~~~~~~~g~v~~~~~~~~~~~~~-~~~~~~~~gi~~~~dg~~l~v~~~~~~~i~~~~~~  182 (243)
                                     ..+.|..+|..++..... .........++|+|+|++|+++. .++.|..|+..
T Consensus       170 ---------------~Dg~v~iwD~~~~~~~~~~~~~~~~v~~v~wspdg~~lasgs-~dg~v~iwd~~  222 (434)
T 2oit_A          170 ---------------ADGSIAVLQVTETVKVCATLPSTVAVTSVCWSPKGKQLAVGK-QNGTVVQYLPT  222 (434)
T ss_dssp             ---------------TTSCEEEEEESSSEEEEEEECGGGCEEEEEECTTSSCEEEEE-TTSCEEEECTT
T ss_pred             ---------------CCCeEEEEEcCCCcceeeccCCCCceeEEEEcCCCCEEEEEc-CCCcEEEEccC
Confidence                           235677788776643222 22234568899999999777775 56889999865

>4ggc_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; HET: MRD; 1.35A {Homo sapiens}

Probab=96.91  E-value=0.097  Score=40.70  Aligned_cols=145  Identities=14%  Similarity=-0.010  Sum_probs=81.2

Q ss_pred             cEEEcCCCcEEEEeCCCcEEEEc-cCCceeEeccc--CCccccceEEccCCCEEEEEeCCCcEEEEe-cCC-cEEEEecc
Q 026118           14 DVSVDGNGVLYTATGDGWIKRMH-PNGTWEDWHQV--GSQSLLGLTTTKENNVIIVCDSQQGLLKVS-EEG-VTVLVSQF   88 (243)
Q Consensus        14 ~i~~d~~g~l~~~~~~~~i~~~~-~~g~~~~~~~~--~~~~~~~i~~~~~g~l~~v~~~~~gl~~~~-~~g-~~~~~~~~   88 (243)
                      .|++.+++.|-++ .++.|+.+| .+++.......  ......+++++++|+++..+..++.+..++ .++ ......  
T Consensus        30 ~l~WS~~~~lAvg-~D~tV~iWd~~tg~~~~~~~~~~~~~~V~~v~~~~~~~~l~sgs~Dg~v~iw~~~~~~~~~~~~--  106 (318)
T 4ggc_A           30 LVDWSSGNVLAVA-LDNSVYLWSASSGDILQLLQMEQPGEYISSVAWIKEGNYLAVGTSSAEVQLWDVQQQKRLRNMT--  106 (318)
T ss_dssp             CEEECTTSEEEEE-ETTEEEEEETTTCCEEEEEECCSTTCCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEEEEE--
T ss_pred             EEEECCCCEEEEE-eCCEEEEEECCCCCEEEEEEecCCCCeEEEEEECCCCCEEEEEECCCcEEEeecCCceeEEEec--
Confidence            4777777644454 578899999 46665433221  122233889999999856666555566777 666 222111  


Q ss_pred             CCCcccCCccEEEcCCCcEEEEeCCCCCCcccccccccccCCCceEEEEeCCCCe--eEEeeccccccceEEEcCCCCEE
Q 026118           89 NGSQLRFANDVIEASDGSLYFTVSSTKFTPAEYYLDLVSGEPHGVLLKYDPSTNQ--TSLVLDGLYFANGVALSEDERFL  166 (243)
Q Consensus        89 ~~~~~~~~~~l~~d~~G~l~v~~~~~~~~~~~~~~~~~~~~~~g~v~~~~~~~~~--~~~~~~~~~~~~gi~~~~dg~~l  166 (243)
                       +.   .........++.+.++.+.                 .+.+...+..+..  ...+.........++++++++.+
T Consensus       107 -~h---~~~~~~~~~~~~~l~s~~~-----------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l  165 (318)
T 4ggc_A          107 -SH---SARVGSLSWNSYILSSGSR-----------------SGHIHHHDVRVAEHHVATLSGHSQEVCGLRWAPDGRHL  165 (318)
T ss_dssp             -CC---SSCEEEEEEETTEEEEEET-----------------TSEEEEEETTSSSCEEEEEECCSSCEEEEEECTTSSEE
T ss_pred             -Cc---cceEEEeecCCCEEEEEec-----------------CCceEeeecCCCceeEEEEcCccCceEEEEEcCCCCEE
Confidence             11   1112234445565554221                 2344444444332  22223334455678899999955


Q ss_pred             EEEEcCCCeEEEEEeec
Q 026118          167 VVCESWKFRCVKHFLKV  183 (243)
Q Consensus       167 ~v~~~~~~~i~~~~~~~  183 (243)
                      +.+ ..++.|..++...
T Consensus       166 ~s~-~~d~~i~iwd~~~  181 (318)
T 4ggc_A          166 ASG-GNDNLVNVWPSAP  181 (318)
T ss_dssp             EEE-ETTSCEEEEESSC
T ss_pred             EEE-ecCcceeEEECCC
Confidence            544 5678899998764

>2bkl_A Prolyl endopeptidase; mechanistic study, celiac sprue, hydrolase, protease; HET: ZAH MES; 1.5A {Myxococcus xanthus}

Probab=96.73  E-value=0.022  Score=50.47  Aligned_cols=148  Identities=11%  Similarity=-0.001  Sum_probs=81.3

Q ss_pred             cEEEcCCCc-EEEEeCCC----cEEEEc-cCCceeEecccCCccccceEEccCCCEEEEEeC----CCcEEEEe-cCC-c
Q 026118           14 DVSVDGNGV-LYTATGDG----WIKRMH-PNGTWEDWHQVGSQSLLGLTTTKENNVIIVCDS----QQGLLKVS-EEG-V   81 (243)
Q Consensus        14 ~i~~d~~g~-l~~~~~~~----~i~~~~-~~g~~~~~~~~~~~~~~~i~~~~~g~l~~v~~~----~~gl~~~~-~~g-~   81 (243)
                      ++.+++||. |.++..++    .|+.++ +++++..+........ .... ++|++ |+...    ...|+.++ .++ .
T Consensus       231 ~~~~SpDG~~l~~~~~~~~~~~~l~~~~~~~~~~~~l~~~~~~~~-~~~~-~~g~l-~~~s~~~~~~~~l~~~d~~~~~~  307 (695)
T 2bkl_A          231 QSDLSRDGKYLFVYILRGWSENDVYWKRPGEKDFRLLVKGVGAKY-EVHA-WKDRF-YVLTDEGAPRQRVFEVDPAKPAR  307 (695)
T ss_dssp             EEEECTTSCCEEEEEEETTTEEEEEEECTTCSSCEEEEECSSCCE-EEEE-ETTEE-EEEECTTCTTCEEEEEBTTBCSG
T ss_pred             EEEECCCCCEEEEEEeCCCCceEEEEEcCCCCceEEeecCCCceE-EEEe-cCCcE-EEEECCCCCCCEEEEEeCCCCCc
Confidence            577788884 55544322    677777 3555555443222222 3333 56665 66653    23588888 444 2


Q ss_pred             ---EEEEeccCCCcccCCccEEEcCCCcEEEEeCCCCCCcccccccccccCCCceEEEEeCCCCeeEEeec-cccccceE
Q 026118           82 ---TVLVSQFNGSQLRFANDVIEASDGSLYFTVSSTKFTPAEYYLDLVSGEPHGVLLKYDPSTNQTSLVLD-GLYFANGV  157 (243)
Q Consensus        82 ---~~~~~~~~~~~~~~~~~l~~d~~G~l~v~~~~~~~~~~~~~~~~~~~~~~g~v~~~~~~~~~~~~~~~-~~~~~~gi  157 (243)
                         +.+...   .....+.+++++ ++.++++...               .....|+.++.+++..+.+.. ......++
T Consensus       308 ~~~~~l~~~---~~~~~l~~~~~~-~~~lv~~~~~---------------dg~~~l~~~~~~g~~~~~l~~~~~~~v~~~  368 (695)
T 2bkl_A          308 ASWKEIVPE---DSSASLLSVSIV-GGHLSLEYLK---------------DATSEVRVATLKGKPVRTVQLPGVGAASNL  368 (695)
T ss_dssp             GGCEEEECC---CSSCEEEEEEEE-TTEEEEEEEE---------------TTEEEEEEEETTCCEEEECCCSSSSEECCC
T ss_pred             cCCeEEecC---CCCCeEEEEEEE-CCEEEEEEEE---------------CCEEEEEEEeCCCCeeEEecCCCCeEEEEe
Confidence               444321   111234456666 6677776321               123478889987454444432 23344567


Q ss_pred             EEcCCCCEEEEEEcC---CCeEEEEEeec
Q 026118          158 ALSEDERFLVVCESW---KFRCVKHFLKV  183 (243)
Q Consensus       158 ~~~~dg~~l~v~~~~---~~~i~~~~~~~  183 (243)
                      .++++++.++++-..   ...|+.++..+
T Consensus       369 ~~s~d~~~l~~~~ss~~~P~~v~~~d~~~  397 (695)
T 2bkl_A          369 MGLEDLDDAYYVFTSFTTPRQIYKTSVST  397 (695)
T ss_dssp             BSCTTCSEEEEEEEETTEEEEEEEEETTT
T ss_pred             ecCCCCCEEEEEEcCCCCCCEEEEEECCC
Confidence            788888877765432   24688887654

>2w18_A PALB2, fancn, partner and localizer of BRCA2; fanconi anemia, homologous recomination, polymorphism, phosphoprotein, beta-propeller, WD40, nucleus; 1.90A {Homo sapiens} PDB: 3eu7_A

Probab=96.72  E-value=0.17  Score=40.92  Aligned_cols=50  Identities=14%  Similarity=0.014  Sum_probs=33.9

Q ss_pred             CceEEEEeCCCCeeEEeecc-cccc-ceEEEcCCCCEEEEEEcCCCeEEEEEe
Q 026118          131 HGVLLKYDPSTNQTSLVLDG-LYFA-NGVALSEDERFLVVCESWKFRCVKHFL  181 (243)
Q Consensus       131 ~g~v~~~~~~~~~~~~~~~~-~~~~-~gi~~~~dg~~l~v~~~~~~~i~~~~~  181 (243)
                      ++.|...|..+++......+ ...+ ..++|+|||++|+ +...++.|..+++
T Consensus       304 DgTIkIWDl~tGk~l~tL~gH~~~vvs~vafSPDG~~La-SGS~D~TIklWd~  355 (356)
T 2w18_A          304 SGTIAIWDLLLGQCTALLPPVSDQHWSFVKWSGTDSHLL-AGQKDGNIFVYHY  355 (356)
T ss_dssp             TSCEEEEETTTCSEEEEECCC--CCCCEEEECSSSSEEE-EECTTSCEEEEEE
T ss_pred             CCcEEEEECCCCcEEEEecCCCCCeEEEEEECCCCCEEE-EEECCCcEEEecC
Confidence            45788889988876554432 2223 3589999999555 4467788888874

>3iuj_A Prolyl endopeptidase; hydrolase; 1.80A {Aeromonas punctata} PDB: 3iul_A 3ium_A 3ivm_A* 3iur_A* 3iun_A* 3iuq_A* 3muo_A* 3mun_A*

Probab=96.67  E-value=0.23  Score=44.02  Aligned_cols=108  Identities=10%  Similarity=0.169  Sum_probs=61.2

Q ss_pred             ceEEccCCCEEEEEeCC----CcEEEEe-cCC---cEEEEeccCCCcccCCccEEEcCC-CcEEEEeCCCCCCccccccc
Q 026118           54 GLTTTKENNVIIVCDSQ----QGLLKVS-EEG---VTVLVSQFNGSQLRFANDVIEASD-GSLYFTVSSTKFTPAEYYLD  124 (243)
Q Consensus        54 ~i~~~~~g~l~~v~~~~----~gl~~~~-~~g---~~~~~~~~~~~~~~~~~~l~~d~~-G~l~v~~~~~~~~~~~~~~~  124 (243)
                      ++.+++||+.+++....    ..++.++ .++   .+.+.....     ..... ++++ +.+|+.+..           
T Consensus       238 ~~~~SpDg~~l~~~~~~~~~~~~i~~~d~~~~~~~~~~l~~~~~-----~~~~~-~~~~g~~l~~~t~~-----------  300 (693)
T 3iuj_A          238 GATVTEDDRFLLISAANSTSGNRLYVKDLSQENAPLLTVQGDLD-----ADVSL-VDNKGSTLYLLTNR-----------  300 (693)
T ss_dssp             EEEECTTSCEEEEEEESSSSCCEEEEEETTSTTCCCEEEECSSS-----SCEEE-EEEETTEEEEEECT-----------
T ss_pred             EEEEcCCCCEEEEEEccCCCCcEEEEEECCCCCCceEEEeCCCC-----ceEEE-EeccCCEEEEEECC-----------
Confidence            67889999975554422    2577777 333   444432211     11122 4554 457776432           


Q ss_pred             ccccCCCceEEEEeCCCCee---EEeeccccccceEEEcCCCCEEEEEEcCCC--eEEEEEeec
Q 026118          125 LVSGEPHGVLLKYDPSTNQT---SLVLDGLYFANGVALSEDERFLVVCESWKF--RCVKHFLKV  183 (243)
Q Consensus       125 ~~~~~~~g~v~~~~~~~~~~---~~~~~~~~~~~gi~~~~dg~~l~v~~~~~~--~i~~~~~~~  183 (243)
                         ......|++++.+++..   +.+.......  +.+++++++|++....++  .|+.++.++
T Consensus       301 ---~~~~~~l~~~d~~~~~~~~~~~l~~~~~~~--~~~s~~g~~lv~~~~~~g~~~l~~~d~~g  359 (693)
T 3iuj_A          301 ---DAPNRRLVTVDAANPGPAHWRDLIPERQQV--LTVHSGSGYLFAEYMVDATARVEQFDYEG  359 (693)
T ss_dssp             ---TCTTCEEEEEETTSCCGGGCEEEECCCSSC--EEEEEETTEEEEEEEETTEEEEEEECTTS
T ss_pred             ---CCCCCEEEEEeCCCCCccccEEEecCCCCE--EEEEEECCEEEEEEEECCeeEEEEEECCC
Confidence               12346899999987653   4444332222  277888888887755443  577777654

>1flg_A Protein (quinoprotein ethanol dehydrogenase); superbarrel, oxidoreductase; HET: PQQ; 2.60A {Pseudomonas aeruginosa} SCOP: b.70.1.1

Probab=96.62  E-value=0.11  Score=45.10  Aligned_cols=113  Identities=16%  Similarity=0.158  Sum_probs=60.3

Q ss_pred             CCcEEEEeCCCcEEEEc-cCCceeEecccCCcc---------ccceEEccCCCEEEEEeCCCcEEEEe-cCC-cEEEEec
Q 026118           20 NGVLYTATGDGWIKRMH-PNGTWEDWHQVGSQS---------LLGLTTTKENNVIIVCDSQQGLLKVS-EEG-VTVLVSQ   87 (243)
Q Consensus        20 ~g~l~~~~~~~~i~~~~-~~g~~~~~~~~~~~~---------~~~i~~~~~g~l~~v~~~~~gl~~~~-~~g-~~~~~~~   87 (243)
                      +|.||+++..+.|+.+| .+|+...........         ..++++ .++++ |+++....|+.+| .+| ...-...
T Consensus        68 ~g~vyv~~~~~~v~AlD~~tG~~~W~~~~~~~~~~~~~~~~~~~g~a~-~~~~v-~~~t~dg~l~AlD~~TG~~~W~~~~  145 (582)
T 1flg_A           68 DGVIYVTASYSRLFALDAKTGKRLWTYNHRLPDDIRPCCDVVNRGAAI-YGDKV-FFGTLDASVVALNKNTGKVVWKKKF  145 (582)
T ss_dssp             TTEEEEEETTTEEEEEESSSCCEEEEEECCCCTTCCCSSCSCCCCCEE-ETTEE-EEEETTTEEEEEESSSCCEEEEEEC
T ss_pred             CCEEEEEcCCCCEEEEECCCCcEEEEEcCCCCcccccccccCCCccEE-ECCEE-EEEeCCCEEEEEECCCCCEEeeecC
Confidence            68899998655699999 477654322111100         114454 34566 8888777899999 788 3332221


Q ss_pred             cC---CCcccCCccEEEc-CCC--cEEEEeCCCCCCcccccccccccCCCceEEEEeCCCCeeEE
Q 026118           88 FN---GSQLRFANDVIEA-SDG--SLYFTVSSTKFTPAEYYLDLVSGEPHGVLLKYDPSTNQTSL  146 (243)
Q Consensus        88 ~~---~~~~~~~~~l~~d-~~G--~l~v~~~~~~~~~~~~~~~~~~~~~~g~v~~~~~~~~~~~~  146 (243)
                      ..   .......--+.-+ .+|  .+|++....+            ....+.|+.+|.++|+...
T Consensus       146 ~~~~~~~~~~~sP~v~~~~~~G~~~v~vg~~~~e------------~~~~g~v~alD~~tG~~~W  198 (582)
T 1flg_A          146 ADHGAGYTMTGAPTIVKDGKTGKVLLIHGSSGDE------------FGVVGRLFARDPDTGEEIW  198 (582)
T ss_dssp             SCGGGTCBCCSCCEEEECTTTCCEEEEECCBCGG------------GCCBCEEEEECTTTCCEEE
T ss_pred             CCCCcCcccccCCEEeCCCcCCcEEEEEeccccc------------cCCCCEEEEEECCCCCEEe
Confidence            11   0011111112211 123  5776542210            0124689999998887654

>2w18_A PALB2, fancn, partner and localizer of BRCA2; fanconi anemia, homologous recomination, polymorphism, phosphoprotein, beta-propeller, WD40, nucleus; 1.90A {Homo sapiens} PDB: 3eu7_A

Probab=96.60  E-value=0.22  Score=40.38  Aligned_cols=153  Identities=11%  Similarity=-0.038  Sum_probs=72.9

Q ss_pred             ceEEcc---CCCEEEEEeCCCc-EEEEe-cCC--cEEEEeccCCCcccCCccEEEcCCCcEEEEeCCCCCCccccccccc
Q 026118           54 GLTTTK---ENNVIIVCDSQQG-LLKVS-EEG--VTVLVSQFNGSQLRFANDVIEASDGSLYFTVSSTKFTPAEYYLDLV  126 (243)
Q Consensus        54 ~i~~~~---~g~l~~v~~~~~g-l~~~~-~~g--~~~~~~~~~~~~~~~~~~l~~d~~G~l~v~~~~~~~~~~~~~~~~~  126 (243)
                      .++|.+   ++.+ +++....+ |..+| .+|  .+.+...  ......+..++++|+|.+.++.+...   ..|  ++.
T Consensus       183 ~l~fs~~~g~~~~-LaSgS~D~TIkIWDl~TGk~l~tL~g~--~~~v~~v~~vafSpdG~~lvs~s~~~---~~w--~la  254 (356)
T 2w18_A          183 ILTFAEVQGMQEA-LLGTTIMNNIVIWNLKTGQLLKKMHID--DSYQASVCHKAYSEMGLLFIVLSHPC---AKE--SES  254 (356)
T ss_dssp             EEEEEEEETSTTE-EEEEETTSEEEEEETTTCCEEEEEECC--C---CCCEEEEEEETTEEEEEEC--------------
T ss_pred             eEEeeccCCCCce-EEEecCCCcEEEEECCCCcEEEEEcCC--CcceeeeEEEEECCCCCEEEEeccCC---Ccc--eee
Confidence            455655   6788 45433444 55667 667  3333211  11123455678999998876633200   000  122


Q ss_pred             ccCCCceEEEEeCCCCeeEEee----ccccccceEEEcCCCCEEEEEEcCCCeEEEEEeecCCCcceEEeccCCCCCCCc
Q 026118          127 SGEPHGVLLKYDPSTNQTSLVL----DGLYFANGVALSEDERFLVVCESWKFRCVKHFLKVSGRTDREIFIDNLPGGPDN  202 (243)
Q Consensus       127 ~~~~~g~v~~~~~~~~~~~~~~----~~~~~~~gi~~~~dg~~l~v~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~  202 (243)
                      .+.....|-.+|+++++.....    .......-+..+.++. +.++...++.|..+|+..+..  ...+..........
T Consensus       255 SGs~D~tIklWd~~tgk~l~v~~~~~p~Gh~~~~lsg~~sg~-~lASgS~DgTIkIWDl~tGk~--l~tL~gH~~~vvs~  331 (356)
T 2w18_A          255 LRSPVFQLIVINPKTTLSVGVMLYCLPPGQAGRFLEGDVKDH-CAAAILTSGTIAIWDLLLGQC--TALLPPVSDQHWSF  331 (356)
T ss_dssp             ---CCEEEEEEETTTTEEEEEEEECCCTTCCCCEEEEEEETT-EEEEEETTSCEEEEETTTCSE--EEEECCC--CCCCE
T ss_pred             ccCCCcEEEEEECCCCEEEEEEEeeccCCCcceeEccccCCC-EEEEEcCCCcEEEEECCCCcE--EEEecCCCCCeEEE
Confidence            2334456666788877654321    0000001122222344 455555678899999865321  12222111111234


Q ss_pred             eEECCCCCEEEEEec
Q 026118          203 VNLARDGSFWISIIK  217 (243)
Q Consensus       203 i~~d~~G~lwv~~~~  217 (243)
                      +++.++|++.++...
T Consensus       332 vafSPDG~~LaSGS~  346 (356)
T 2w18_A          332 VKWSGTDSHLLAGQK  346 (356)
T ss_dssp             EEECSSSSEEEEECT
T ss_pred             EEECCCCCEEEEEEC
Confidence            789999986665543

>1yr2_A Prolyl oligopeptidase; prolyl endopeptidase, mechanistic study, celiac sprue, hydro; 1.80A {Novosphingobium capsulatum}

Probab=96.34  E-value=0.14  Score=45.74  Aligned_cols=145  Identities=14%  Similarity=0.102  Sum_probs=74.2

Q ss_pred             ccCCCEEEEEeCCC-----cEEEEe-c---CC-cEEEEeccC--CCcccCCccEEEcCCCcEE-EEeCCCCCCccccccc
Q 026118           58 TKENNVIIVCDSQQ-----GLLKVS-E---EG-VTVLVSQFN--GSQLRFANDVIEASDGSLY-FTVSSTKFTPAEYYLD  124 (243)
Q Consensus        58 ~~~g~l~~v~~~~~-----gl~~~~-~---~g-~~~~~~~~~--~~~~~~~~~l~~d~~G~l~-v~~~~~~~~~~~~~~~  124 (243)
                      .++|+.++......     .+++.+ .   .+ .+.+.....  ........++.++|||+.. ++.+.           
T Consensus       115 ~pdG~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~lld~~~l~~~~~~~~~~~~~SPDG~~la~~~~~-----------  183 (741)
T 1yr2_A          115 QRRGASVFYSWNSGLMNQSQLLVRPADAPVGTKGRVLLDPNTWAKDGATALDAWAASDDGRLLAYSVQD-----------  183 (741)
T ss_dssp             EEETTEEEEEEECSSCSSCEEEEEETTSCTTCCCEEEECGGGCC----EEEEEEEECTTSSEEEEEEEE-----------
T ss_pred             EEECCEEEEEEEcCCCeEEEEEEEcCCccCCCCCEEEECHHHhccCCCEEEEeEEECCCCCEEEEEEcC-----------
Confidence            37787644433221     256776 4   44 555433211  1111234567899999844 33211           


Q ss_pred             ccccCCCceEEEEeCCCCeeEEeeccccccceEEEcCCCCEEEEEEcCC-------------CeEEEEEeecCCCcceEE
Q 026118          125 LVSGEPHGVLLKYDPSTNQTSLVLDGLYFANGVALSEDERFLVVCESWK-------------FRCVKHFLKVSGRTDREI  191 (243)
Q Consensus       125 ~~~~~~~g~v~~~~~~~~~~~~~~~~~~~~~gi~~~~dg~~l~v~~~~~-------------~~i~~~~~~~~~~~~~~~  191 (243)
                        .+.....|+.+|.++++............+++|+|| +.|+++....             ..|+++++.++......+
T Consensus       184 --~G~e~~~i~v~dl~tg~~~~~~~~~~~~~~~~wspD-~~l~~~~~~~~~~~~~~~~~~~~~~v~~~~lgt~~~~~~lv  260 (741)
T 1yr2_A          184 --GGSDWRTVKFVGVADGKPLADELKWVKFSGLAWLGN-DALLYSRFAEPKEGQAFQALNYNQTVWLHRLGTPQSADQPV  260 (741)
T ss_dssp             --TTCSEEEEEEEETTTCCEEEEEEEEEESCCCEESTT-SEEEEEECCCC--------CCCCCEEEEEETTSCGGGCEEE
T ss_pred             --CCCceEEEEEEECCCCCCCCccCCCceeccEEEECC-CEEEEEEecCcccccccccCCCCCEEEEEECCCCchhCEEE
Confidence              011124699999998876553211111257899999 8888875432             248887765432112223


Q ss_pred             eccCC-CCCCCceEECCCCC-EEEEEe
Q 026118          192 FIDNL-PGGPDNVNLARDGS-FWISII  216 (243)
Q Consensus       192 ~~~~~-~~~~~~i~~d~~G~-lwv~~~  216 (243)
                      +.... +.+..++.+++||+ |.+...
T Consensus       261 ~~~~~~~~~~~~~~~SpDG~~l~~~~~  287 (741)
T 1yr2_A          261 FATPELPKRGHGASVSSDGRWVVITSS  287 (741)
T ss_dssp             ECCTTCTTCEEEEEECTTSCEEEEEEE
T ss_pred             eccCCCCeEEEEEEECCCCCEEEEEEE
Confidence            22111 11234567788886 444443

>1p22_A F-BOX/WD-repeat protein 1A; ubiquitination, degradation, signaling protein; HET: SEP; 2.95A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1

Probab=96.19  E-value=0.42  Score=39.34  Aligned_cols=136  Identities=15%  Similarity=0.102  Sum_probs=72.7

Q ss_pred             cEEEEeCCCcEEEEc-cCCceeE-ecccCCccccceEEccCCCEEEEEeCCCcEEEEe-cCC-cEEEEeccCCCcccCCc
Q 026118           22 VLYTATGDGWIKRMH-PNGTWED-WHQVGSQSLLGLTTTKENNVIIVCDSQQGLLKVS-EEG-VTVLVSQFNGSQLRFAN   97 (243)
Q Consensus        22 ~l~~~~~~~~i~~~~-~~g~~~~-~~~~~~~~~~~i~~~~~g~l~~v~~~~~gl~~~~-~~g-~~~~~~~~~~~~~~~~~   97 (243)
                      .|.++..++.|..++ .+++... +........ .+.++  +++++++..++.+..++ .++ .........+. ...+.
T Consensus       185 ~l~sg~~dg~i~vwd~~~~~~~~~~~~h~~~v~-~l~~~--~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~-~~~v~  260 (435)
T 1p22_A          185 VIITGSSDSTVRVWDVNTGEMLNTLIHHCEAVL-HLRFN--NGMMVTCSKDRSIAVWDMASPTDITLRRVLVGH-RAAVN  260 (435)
T ss_dssp             EEEEEETTSCEEEEESSSCCEEEEECCCCSCEE-EEECC--TTEEEEEETTSCEEEEECSSSSCCEEEEEECCC-SSCEE
T ss_pred             EEEEEcCCCeEEEEECCCCcEEEEEcCCCCcEE-EEEEc--CCEEEEeeCCCcEEEEeCCCCCCceeeeEecCC-CCcEE
Confidence            455666778888888 3444332 222112223 56664  34546666656677777 544 22111111111 12344


Q ss_pred             cEEEcCCCcEEEEeCCCCCCcccccccccccCCCceEEEEeCCCCeeEEeec-cccccceEEEcCCCCEEEEEEcCCCeE
Q 026118           98 DVIEASDGSLYFTVSSTKFTPAEYYLDLVSGEPHGVLLKYDPSTNQTSLVLD-GLYFANGVALSEDERFLVVCESWKFRC  176 (243)
Q Consensus        98 ~l~~d~~G~l~v~~~~~~~~~~~~~~~~~~~~~~g~v~~~~~~~~~~~~~~~-~~~~~~gi~~~~dg~~l~v~~~~~~~i  176 (243)
                      ++.+  ++++.++.+                 ..+.|..+|..+++...... .......+.+  +++.++.+ ..++.|
T Consensus       261 ~~~~--~~~~l~s~~-----------------~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~--~~~~l~~g-~~dg~i  318 (435)
T 1p22_A          261 VVDF--DDKYIVSAS-----------------GDRTIKVWNTSTCEFVRTLNGHKRGIACLQY--RDRLVVSG-SSDNTI  318 (435)
T ss_dssp             EEEE--ETTEEEEEE-----------------TTSEEEEEETTTCCEEEEEECCSSCEEEEEE--ETTEEEEE-ETTSCE
T ss_pred             EEEe--CCCEEEEEe-----------------CCCeEEEEECCcCcEEEEEcCCCCcEEEEEe--CCCEEEEE-eCCCeE
Confidence            5555  555555421                 24578888988776554332 2333455666  46645554 567889


Q ss_pred             EEEEeec
Q 026118          177 VKHFLKV  183 (243)
Q Consensus       177 ~~~~~~~  183 (243)
                      ..||...
T Consensus       319 ~iwd~~~  325 (435)
T 1p22_A          319 RLWDIEC  325 (435)
T ss_dssp             EEEETTT
T ss_pred             EEEECCC
Confidence            9999764

>1p22_A F-BOX/WD-repeat protein 1A; ubiquitination, degradation, signaling protein; HET: SEP; 2.95A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1

Probab=95.31  E-value=0.98  Score=37.10  Aligned_cols=140  Identities=14%  Similarity=0.066  Sum_probs=75.8

Q ss_pred             EEcCCCc-EEEEeCCCcEEEEc-cCCceeEecccCCccccceEEccCCCEEEEEeCCCcEEEEe-cCC-cEEEEeccCCC
Q 026118           16 SVDGNGV-LYTATGDGWIKRMH-PNGTWEDWHQVGSQSLLGLTTTKENNVIIVCDSQQGLLKVS-EEG-VTVLVSQFNGS   91 (243)
Q Consensus        16 ~~d~~g~-l~~~~~~~~i~~~~-~~g~~~~~~~~~~~~~~~i~~~~~g~l~~v~~~~~gl~~~~-~~g-~~~~~~~~~~~   91 (243)
                      ++..++. |.++..++.|..++ .+++..........+...+.+  ++++++++..++.|..++ .++ ......   + 
T Consensus       138 ~~~~d~~~l~~g~~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~--~~~~l~sg~~dg~i~vwd~~~~~~~~~~~---~-  211 (435)
T 1p22_A          138 CLQYDDQKIVSGLRDNTIKIWDKNTLECKRILTGHTGSVLCLQY--DERVIITGSSDSTVRVWDVNTGEMLNTLI---H-  211 (435)
T ss_dssp             EEECCSSEEEEEESSSCEEEEESSSCCEEEEECCCSSCEEEEEC--CSSEEEEEETTSCEEEEESSSCCEEEEEC---C-
T ss_pred             EEEECCCEEEEEeCCCeEEEEeCCCCeEEEEEcCCCCcEEEEEE--CCCEEEEEcCCCeEEEEECCCCcEEEEEc---C-
Confidence            3444554 55666889999998 445433322211222225555  677757776666688888 666 222111   1 


Q ss_pred             cccCCccEEEcCCCcEEEEeCCCCCCcccccccccccCCCceEEEEeCCCCeeE---Ee-eccccccceEEEcCCCCEEE
Q 026118           92 QLRFANDVIEASDGSLYFTVSSTKFTPAEYYLDLVSGEPHGVLLKYDPSTNQTS---LV-LDGLYFANGVALSEDERFLV  167 (243)
Q Consensus        92 ~~~~~~~l~~d~~G~l~v~~~~~~~~~~~~~~~~~~~~~~g~v~~~~~~~~~~~---~~-~~~~~~~~gi~~~~dg~~l~  167 (243)
                      ....+.+++++  +.+.++.+                 ..+.|..+|..+++..   .. .........+.+  ++++++
T Consensus       212 h~~~v~~l~~~--~~~l~s~s-----------------~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~~~~--~~~~l~  270 (435)
T 1p22_A          212 HCEAVLHLRFN--NGMMVTCS-----------------KDRSIAVWDMASPTDITLRRVLVGHRAAVNVVDF--DDKYIV  270 (435)
T ss_dssp             CCSCEEEEECC--TTEEEEEE-----------------TTSCEEEEECSSSSCCEEEEEECCCSSCEEEEEE--ETTEEE
T ss_pred             CCCcEEEEEEc--CCEEEEee-----------------CCCcEEEEeCCCCCCceeeeEecCCCCcEEEEEe--CCCEEE
Confidence            11234555554  33444321                 2356777777655432   12 222233455666  677566


Q ss_pred             EEEcCCCeEEEEEeec
Q 026118          168 VCESWKFRCVKHFLKV  183 (243)
Q Consensus       168 v~~~~~~~i~~~~~~~  183 (243)
                      .+ ..++.|..+|...
T Consensus       271 s~-~~dg~i~vwd~~~  285 (435)
T 1p22_A          271 SA-SGDRTIKVWNTST  285 (435)
T ss_dssp             EE-ETTSEEEEEETTT
T ss_pred             EE-eCCCeEEEEECCc
Confidence            55 4578899998764

>3zwu_A Alkaline phosphatase PHOX; hydrolase, beta-propeller, iron; 1.39A {Pseudomonas fluorescens}

Probab=95.19  E-value=0.067  Score=46.49  Aligned_cols=59  Identities=17%  Similarity=0.331  Sum_probs=42.4

Q ss_pred             ccCCcccEEEcCCCcEEEEeCCC-------------cEEEEcc-CCceeEecccC--CccccceEEccCCCEEEEE
Q 026118            8 IVNHPEDVSVDGNGVLYTATGDG-------------WIKRMHP-NGTWEDWHQVG--SQSLLGLTTTKENNVIIVC   67 (243)
Q Consensus         8 ~~~~p~~i~~d~~g~l~~~~~~~-------------~i~~~~~-~g~~~~~~~~~--~~~~~~i~~~~~g~l~~v~   67 (243)
                      .|.+|..|++|+.|+||++++.+             .+...++ .|++.++....  .... |++|++|++.||+.
T Consensus       474 ~f~~PDNL~fd~~G~LwI~eDg~~~~~~~~~~~gnn~~~~~~~~~g~~~rf~~~P~gaE~T-G~~fspDg~tlfvn  548 (592)
T 3zwu_A          474 MFNSPDGLGFDKAGRLWILTDGDSSNAGDFAGMGNNQMLCADPATGEIRRFMVGPIGCEVT-GISFSPDQKTLFVG  548 (592)
T ss_dssp             CCCCEEEEEECTTCCEEEEECCCCCCSGGGTTTCSCEEEEECTTTCCEEEEEECCTTCEEE-EEEECTTSSEEEEE
T ss_pred             CccCCcceEECCCCCEEEEecCCCcccccccccccceEEEEeCCCCeEEEEEeCCCCccCc-CeeECCCCCEEEEE
Confidence            47899999999999999998432             3455553 57777765432  2345 88999998875665

>2xe4_A Oligopeptidase B; hydrolase-inhibitor complex, hydrolase, protease inhibitor trypanosomes, CLAN SC; HET: FC0 RGL; 1.65A {Leishmania major}

Probab=94.91  E-value=0.75  Score=41.23  Aligned_cols=148  Identities=11%  Similarity=0.016  Sum_probs=76.3

Q ss_pred             ccEEEc-CCCc-EE-EEeCCC----cEEEEcc-CC-ceeEecccCCccccceEEccCCCEEEEEeCC-----CcEEEEe-
Q 026118           13 EDVSVD-GNGV-LY-TATGDG----WIKRMHP-NG-TWEDWHQVGSQSLLGLTTTKENNVIIVCDSQ-----QGLLKVS-   77 (243)
Q Consensus        13 ~~i~~d-~~g~-l~-~~~~~~----~i~~~~~-~g-~~~~~~~~~~~~~~~i~~~~~g~l~~v~~~~-----~gl~~~~-   77 (243)
                      .++++. +||. |. ..+..|    .|+.++. .| +...-..  ....++++.++||+.|+.+...     ..|++.+ 
T Consensus       177 ~~~~~S~PDG~~lAy~~~~~G~~~~~l~v~dl~~g~~~l~~~~--~~~~~~~~WspDg~~l~y~~~d~~~~~~~v~~~~l  254 (751)
T 2xe4_A          177 MEVKPAPPEHDLVAFSVDMSGNEVYTIEFKRISDPSQTIADKV--SGTNGEIVWGPDHTSLFYVTKDETLRENKVWRHVM  254 (751)
T ss_dssp             EEEEECTTTTCEEEEEEESSSSSCEEEEEEETTCTTCCCCCCE--EEECSCCEECSSTTEEEEEEECTTCCEEEEEEEET
T ss_pred             eeeEecCCCCCEEEEEEeCCCCceEEEEEEECCCCCEeCCccc--cCceeeEEEecCCCEEEEEEECCCCCCCEEEEEEC
Confidence            456788 8885 43 333332    3888884 44 3211101  1112278889998743444332     2477777 


Q ss_pred             cCC-c--EEEEeccCCCcccCCccEEEcCCCc-EEEEeCCCCCCcccccccccccCCCceEEEEeCCCC--ee--EEeec
Q 026118           78 EEG-V--TVLVSQFNGSQLRFANDVIEASDGS-LYFTVSSTKFTPAEYYLDLVSGEPHGVLLKYDPSTN--QT--SLVLD  149 (243)
Q Consensus        78 ~~g-~--~~~~~~~~~~~~~~~~~l~~d~~G~-l~v~~~~~~~~~~~~~~~~~~~~~~g~v~~~~~~~~--~~--~~~~~  149 (243)
                      .++ .  ..+......   ....++.+++||+ |+++...               .....||.++.+++  +.  +.+..
T Consensus       255 gt~~~~~~lv~~~~~~---~~~~~~~~SpDg~~l~~~~~~---------------~~~~~l~~~d~~~~~~~~~~~~l~~  316 (751)
T 2xe4_A          255 GKLQSEDVCLYEEHNP---LFSAFMYKAADTNTLCIGSQS---------------PETAEVHLLDLRKGNAHNTLEIVRP  316 (751)
T ss_dssp             TSCGGGCEEEEECCCT---TCEEEEEECTTSSEEEEEEEC---------------SSCEEEEEEESSSCTTCCCEEESSC
T ss_pred             CCCchhcEEEEecCCC---ceEEEEEECCCCCEEEEEecC---------------CCCceEEEEECCCCCCCceeEEeec
Confidence            443 1  222221111   1233567899997 4443211               12357999998865  34  44433


Q ss_pred             cccccceEEEcCC---CCEEEEEEcC----CCeEEEEEeec
Q 026118          150 GLYFANGVALSED---ERFLVVCESW----KFRCVKHFLKV  183 (243)
Q Consensus       150 ~~~~~~gi~~~~d---g~~l~v~~~~----~~~i~~~~~~~  183 (243)
                      ...   +..++++   |+.||+....    +..|++++.++
T Consensus       317 ~~~---~~~~s~~~~~g~~l~~~t~~~~a~~~~L~~~d~~~  354 (751)
T 2xe4_A          317 REK---GVRYDVQMHGTSHLVILTNEGGAVNHKLLIAPRGQ  354 (751)
T ss_dssp             CCT---TCCEEEEEETTTEEEEEECTTTCTTCEEEEEETTS
T ss_pred             CCC---CceEEEeeeeCCEEEEEeCCCCCCCcEEEEEcCCC
Confidence            221   2223333   6667766433    34788888653

>1xip_A Nucleoporin NUP159; beta-propeller, transport protein; 2.50A {Saccharomyces cerevisiae} SCOP: b.69.14.1 PDB: 3pez_C* 3rrm_C*

Probab=94.54  E-value=1.6  Score=35.78  Aligned_cols=170  Identities=12%  Similarity=0.072  Sum_probs=90.8

Q ss_pred             CCcccEEEcCCCcEEEEeCCCcEEEEcc---C---------Cce-eEecccCCccccceEEccCCCEEEEEeCCCcEEEE
Q 026118           10 NHPEDVSVDGNGVLYTATGDGWIKRMHP---N---------GTW-EDWHQVGSQSLLGLTTTKENNVIIVCDSQQGLLKV   76 (243)
Q Consensus        10 ~~p~~i~~d~~g~l~~~~~~~~i~~~~~---~---------g~~-~~~~~~~~~~~~~i~~~~~g~l~~v~~~~~gl~~~   76 (243)
                      .....+++.+...++++....++..++.   .         -+. .....  ..+. .+++  ++++|+++ .+.+|..+
T Consensus        38 ~~~nlLais~~~gll~a~~~~~l~v~~~~~l~~~~~~~~~~~~~~~~~~l--p~V~-~l~f--d~~~L~v~-~~~~l~v~  111 (388)
T 1xip_A           38 ASLQNLDISNSKSLFVAASGSKAVVGELQLLRDHITSDSTPLTFKWEKEI--PDVI-FVCF--HGDQVLVS-TRNALYSL  111 (388)
T ss_dssp             SCCBCEEEETTTTEEEEEETTEEEEEEHHHHHHHHHSSSCCCCCSEEEEC--TTEE-EEEE--ETTEEEEE-ESSEEEEE
T ss_pred             ccccEEEEcCCCCEEEEeCCCEEEEEEhhHhhhhhccccccccceEEeeC--CCee-EEEE--CCCEEEEE-cCCcEEEE
Confidence            3455688887665554443335555651   1         011 11222  2355 8888  78887888 45678888


Q ss_pred             e-cCC--cEEEEeccCCCcccCCccEEEcCCCcEEEEeCCCCCCcccccccccccCCCceEEEEeCCCCeeEEeeccccc
Q 026118           77 S-EEG--VTVLVSQFNGSQLRFANDVIEASDGSLYFTVSSTKFTPAEYYLDLVSGEPHGVLLKYDPSTNQTSLVLDGLYF  153 (243)
Q Consensus        77 ~-~~g--~~~~~~~~~~~~~~~~~~l~~d~~G~l~v~~~~~~~~~~~~~~~~~~~~~~g~v~~~~~~~~~~~~~~~~~~~  153 (243)
                      + .+-  ...... ...    .+.++..-+. ++.+.+                  .+|.|+.++.+++....+.   ..
T Consensus       112 dv~sl~~~~~~~~-~~~----~v~~i~~~~p-~~av~~------------------~dG~L~v~dl~~~~~~~~~---~~  164 (388)
T 1xip_A          112 DLEELSEFRTVTS-FEK----PVFQLKNVNN-TLVILN------------------SVNDLSALDLRTKSTKQLA---QN  164 (388)
T ss_dssp             ESSSTTCEEEEEE-CSS----CEEEEEECSS-EEEEEE------------------TTSEEEEEETTTCCEEEEE---ES
T ss_pred             EchhhhccCccce-eec----ceeeEEecCC-CEEEEE------------------CCCCEEEEEccCCcccccc---CC
Confidence            8 433  121111 111    1234433322 355443                  2368888888867665432   35


Q ss_pred             cceEEEcCCCCEEEEEEcCCCeEEEEEeecCCCcceEEecc----C----CCCCCCceEECCCCCEEEEE
Q 026118          154 ANGVALSEDERFLVVCESWKFRCVKHFLKVSGRTDREIFID----N----LPGGPDNVNLARDGSFWISI  215 (243)
Q Consensus       154 ~~gi~~~~dg~~l~v~~~~~~~i~~~~~~~~~~~~~~~~~~----~----~~~~~~~i~~d~~G~lwv~~  215 (243)
                      ...++|+|+|  +.++ ..++.+..|++++........+..    .    ....+..|..-+++.+.++.
T Consensus       165 Vs~v~WSpkG--~~vg-~~dg~i~~~~~~~~~~~~k~~I~~Pp~~~~~~~~~~~V~sI~wl~~~~flv~y  231 (388)
T 1xip_A          165 VTSFDVTNSQ--LAVL-LKDRSFQSFAWRNGEMEKQFEFSLPSELEELPVEEYSPLSVTILSPQDFLAVF  231 (388)
T ss_dssp             EEEEEECSSE--EEEE-ETTSCEEEEEEETTEEEEEEEECCCHHHHTSCTTTSEEEEEEESSSSEEEEEE
T ss_pred             ceEEEEcCCc--eEEE-EcCCcEEEEcCCCccccccceecCCcccccccCCCeeEEEEEEecCCeEEEEE
Confidence            6789999999  4444 356788888887643221223311    0    12234556666666555543

>2be1_A Serine/threonine-protein kinase/endoribonuclease; transcription; 2.98A {Saccharomyces cerevisiae}

Probab=94.52  E-value=0.16  Score=40.92  Aligned_cols=60  Identities=13%  Similarity=0.229  Sum_probs=34.8

Q ss_pred             CCcEEEEeCCCcEEEEc-cCCceeEecccCC-ccccceE---EccCCCEEEEEe--CCCcEEEEe-cCC
Q 026118           20 NGVLYTATGDGWIKRMH-PNGTWEDWHQVGS-QSLLGLT---TTKENNVIIVCD--SQQGLLKVS-EEG   80 (243)
Q Consensus        20 ~g~l~~~~~~~~i~~~~-~~g~~~~~~~~~~-~~~~~i~---~~~~g~l~~v~~--~~~gl~~~~-~~g   80 (243)
                      ++.+|+++.+|.|+.+| .+|+......... .|.....   ...++.+ |+..  ..+.|+.++ .+|
T Consensus        10 ~~~V~v~t~dG~l~Ald~~tG~~~W~~~~~~~~p~~~~~~~~~~~~~~~-~vv~p~~dG~l~a~~~~~G   77 (339)
T 2be1_A           10 SDILIAADVEGGLHAVDRRNGHIIWSIEPENFQPLIEIQEPSRLETYET-LIIEPFGDGNIYYFNAHQG   77 (339)
T ss_dssp             EEEEEEEETTSCEEEEETTTTEEEEEECGGGSCCSEECCCSCTTTSSEE-EEECCSTTTEEEEEETTTE
T ss_pred             CCEEEEEeCCCeEEEEECCCCcEEEEecCCccCCcEEecCCccccCCcE-EEEEECCCCEEEEEECCCC
Confidence            56899999999999999 5776553322110 1110110   0123455 6664  345688888 667

>1sqj_A OXG-RCBH, oligoxyloglucan reducing-END-specific cellobiohydrolase; beta-propeller; 2.20A {Geotrichum SP} SCOP: b.69.13.1 b.69.13.1 PDB: 2ebs_A*

Probab=94.49  E-value=2.6  Score=37.98  Aligned_cols=151  Identities=9%  Similarity=0.034  Sum_probs=82.5

Q ss_pred             CCcccEEEcC--CCcEEEEeCCCcEEEEccCC-ceeEecccC------CccccceEEccC-CCEEEEEeCC------CcE
Q 026118           10 NHPEDVSVDG--NGVLYTATGDGWIKRMHPNG-TWEDWHQVG------SQSLLGLTTTKE-NNVIIVCDSQ------QGL   73 (243)
Q Consensus        10 ~~p~~i~~d~--~g~l~~~~~~~~i~~~~~~g-~~~~~~~~~------~~~~~~i~~~~~-g~l~~v~~~~------~gl   73 (243)
                      .+..+|++++  .+.+|++...++|++-...| +++......      ......|++++. .+.+|++...      .+|
T Consensus        15 g~i~~i~~~p~~~~~~~a~~~~ggv~rS~DgG~tW~~~~~~~~~~~~~~~~i~~ia~dp~~~~~i~~~~g~~~~~~~~~v   94 (789)
T 1sqj_A           15 GYITGIVAHPKTKDLLYARTDIGGAYRWDAGTSKWIPLNDFIEAQDMNIMGTESIALDPNNPDRLYLAQGRYVGDEWAAF   94 (789)
T ss_dssp             SCEEEEEECSSSTTCEEEEESSSCEEEEETTTTEEEESCTTCCGGGGGGCSEEEEEEETTEEEEEEEEECSCTTSSCCEE
T ss_pred             CcEEEEEECCCCCCEEEEEecCCCEEEecCCCCCeeECccCCCcccccCCceeEEEECCCCCCEEEEEeCccCCCcccEE
Confidence            3566789986  36899998888899887544 455543211      112326888863 2344887643      355


Q ss_pred             EEEecCC--cEEEEeccCCC---c-ccCCccEEEcCC--CcEEEEeCCCCCCcccccccccccCCCceEEEEeCCCCeeE
Q 026118           74 LKVSEEG--VTVLVSQFNGS---Q-LRFANDVIEASD--GSLYFTVSSTKFTPAEYYLDLVSGEPHGVLLKYDPSTNQTS  145 (243)
Q Consensus        74 ~~~~~~g--~~~~~~~~~~~---~-~~~~~~l~~d~~--G~l~v~~~~~~~~~~~~~~~~~~~~~~g~v~~~~~~~~~~~  145 (243)
                      ++-.+.|  .+.+.......   + ...+..|+++|.  +.+|++..                  .++||+=+-.+..++
T Consensus        95 ~~S~DgG~TW~~~~~~~~~~~~~~~~~~~~~iav~p~~~~~v~~g~~------------------~~gl~~S~DgG~TW~  156 (789)
T 1sqj_A           95 YVSEDRGQSFTIYESPFPMGANDMGRNNGERLAVNPFNSNEVWMGTR------------------TEGIWKSSDRAKTWT  156 (789)
T ss_dssp             EEESSTTSEEEEEECSSCCCTTSTTTTSCCCEEEETTEEEEEEEECS------------------SSCEEEESSTTSSCE
T ss_pred             EEECCCCCcceeccCCcccCccCCCccceeEEEEcCCCCCEEEEEec------------------cCCEEEECCCCcccC
Confidence            5554555  44443211100   0 012356888873  46887631                  246776444334455


Q ss_pred             Eeecc------ccccceEEEcC-CCCEEEEEEcCCCeEEE
Q 026118          146 LVLDG------LYFANGVALSE-DERFLVVCESWKFRCVK  178 (243)
Q Consensus       146 ~~~~~------~~~~~gi~~~~-dg~~l~v~~~~~~~i~~  178 (243)
                      .+...      ......|+++| +++.+|++......|++
T Consensus       157 ~~~~~~~~~~~~~~~~~i~~~p~~~~~~~~~~~~~~~v~~  196 (789)
T 1sqj_A          157 NVTSIPDAFTNGIGYTSVIFDPERNGTIYASATAPQGMYV  196 (789)
T ss_dssp             EETTSCCCCSTTTCEEEEEECTTSTTCEEEEESSTTCEEE
T ss_pred             CCccCccccCCCCCeEEEEECCCCCCEEEEEEcCCCeEEE
Confidence            44321      12234577776 44568887643255654

>4gq1_A NUP37; propeller, transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4gq2_P 4fhl_A 4fhm_A 4fhn_A

Probab=94.01  E-value=0.52  Score=38.39  Aligned_cols=107  Identities=7%  Similarity=-0.011  Sum_probs=60.5

Q ss_pred             cCCCEEEEEeCCCcEEEEe-cCC-cEE--EEeccCCCcccCCccEEEcC--------CCcEEEEeCCCCCCccccccccc
Q 026118           59 KENNVIIVCDSQQGLLKVS-EEG-VTV--LVSQFNGSQLRFANDVIEAS--------DGSLYFTVSSTKFTPAEYYLDLV  126 (243)
Q Consensus        59 ~~g~l~~v~~~~~gl~~~~-~~g-~~~--~~~~~~~~~~~~~~~l~~d~--------~G~l~v~~~~~~~~~~~~~~~~~  126 (243)
                      ++++++..+..++.+..++ ..+ ...  ......+ ....+++|++.|        ||++.++.+.             
T Consensus        99 ~~~~~las~~~d~~v~lw~~~~~~~~~~~~~~~~~g-H~~~v~~v~~~p~~~~~~~~d~~~las~s~-------------  164 (393)
T 4gq1_A           99 VYSLFLACVCQDNTVRLIITKNETIITQHVLGGKSG-HHNFVNDIDIADVYSADNRLAEQVIASVGD-------------  164 (393)
T ss_dssp             EEEEEEEEEETTSCEEEEEEETTEEEEEEEECTTTS-CSSCEEEEEEEEEECTTCSEEEEEEEEEET-------------
T ss_pred             CCCCEEEEEeCCCcEEEEECCCCccceeeeecccCC-CCCceEEEEEccccccccCCCCCEEEEEEC-------------
Confidence            3444434444444566666 454 222  1222222 234678888876        7888877432             


Q ss_pred             ccCCCceEEEEeCCCCe-eEEeeccccccceEEEcCCCCEEEEEEcCCCeEEEEEeec
Q 026118          127 SGEPHGVLLKYDPSTNQ-TSLVLDGLYFANGVALSEDERFLVVCESWKFRCVKHFLKV  183 (243)
Q Consensus       127 ~~~~~g~v~~~~~~~~~-~~~~~~~~~~~~gi~~~~dg~~l~v~~~~~~~i~~~~~~~  183 (243)
                          .+.|...|..++. .............++|+|++..+.++...++.|..+|...
T Consensus       165 ----D~tv~~Wd~~~~~~~~~~~~~~~~v~~v~~~p~~~~~l~~~~~d~~v~~wd~~t  218 (393)
T 4gq1_A          165 ----DCTLIIWRLTDEGPILAGYPLSSPGISVQFRPSNPNQLIVGERNGNIRIFDWTL  218 (393)
T ss_dssp             ----TSEEEEEEEETTEEEEEEEECSSCEEEEEEETTEEEEEEEEETTSEEEEEETTC
T ss_pred             ----CCeEEEEECCCCceeeeecCCCCCcEEEEECCCCCceEEecCCCCEEEEEECCC
Confidence                2344444543333 3333333445678999998865666656778999998764

>2xe4_A Oligopeptidase B; hydrolase-inhibitor complex, hydrolase, protease inhibitor trypanosomes, CLAN SC; HET: FC0 RGL; 1.65A {Leishmania major}

Probab=93.52  E-value=0.76  Score=41.17  Aligned_cols=106  Identities=17%  Similarity=0.085  Sum_probs=57.8

Q ss_pred             CccEEEc-CCCc-EEEEeCCCCCCcccccccccccCCCceEEEEeCCCC-eeEEeeccc-cccceEEEcCCCCEEEEEEc
Q 026118           96 ANDVIEA-SDGS-LYFTVSSTKFTPAEYYLDLVSGEPHGVLLKYDPSTN-QTSLVLDGL-YFANGVALSEDERFLVVCES  171 (243)
Q Consensus        96 ~~~l~~d-~~G~-l~v~~~~~~~~~~~~~~~~~~~~~~g~v~~~~~~~~-~~~~~~~~~-~~~~gi~~~~dg~~l~v~~~  171 (243)
                      ..+..++ |||+ +.++.+.             .+.....|+.+|.+++ +..  .... ....+++|++||+.|+++..
T Consensus       176 ~~~~~~S~PDG~~lAy~~~~-------------~G~~~~~l~v~dl~~g~~~l--~~~~~~~~~~~~WspDg~~l~y~~~  240 (751)
T 2xe4_A          176 VMEVKPAPPEHDLVAFSVDM-------------SGNEVYTIEFKRISDPSQTI--ADKVSGTNGEIVWGPDHTSLFYVTK  240 (751)
T ss_dssp             EEEEEECTTTTCEEEEEEES-------------SSSSCEEEEEEETTCTTCCC--CCCEEEECSCCEECSSTTEEEEEEE
T ss_pred             EeeeEecCCCCCEEEEEEeC-------------CCCceEEEEEEECCCCCEeC--CccccCceeeEEEecCCCEEEEEEE
Confidence            4467899 9997 4444221             0112235999999987 521  1111 12357899999988877654


Q ss_pred             CC----CeEEEEEeecCCCcceEEeccCCCCCCCceEECCCCC-EEEEEe
Q 026118          172 WK----FRCVKHFLKVSGRTDREIFIDNLPGGPDNVNLARDGS-FWISII  216 (243)
Q Consensus       172 ~~----~~i~~~~~~~~~~~~~~~~~~~~~~~~~~i~~d~~G~-lwv~~~  216 (243)
                      ..    ..|+++++.++......++......+..++.+++||+ |.+...
T Consensus       241 d~~~~~~~v~~~~lgt~~~~~~lv~~~~~~~~~~~~~~SpDg~~l~~~~~  290 (751)
T 2xe4_A          241 DETLRENKVWRHVMGKLQSEDVCLYEEHNPLFSAFMYKAADTNTLCIGSQ  290 (751)
T ss_dssp             CTTCCEEEEEEEETTSCGGGCEEEEECCCTTCEEEEEECTTSSEEEEEEE
T ss_pred             CCCCCCCEEEEEECCCCchhcEEEEecCCCceEEEEEECCCCCEEEEEec
Confidence            21    3688877654321222233211122333466778887 444443

>3a0f_A Xyloglucanase; beta-propeller, hydrolase; 2.50A {Geotrichum SP}

Probab=93.51  E-value=4  Score=36.61  Aligned_cols=149  Identities=10%  Similarity=0.015  Sum_probs=80.1

Q ss_pred             CCcccEEEcCC--CcEEEEeCCCcEEEEccCC-ceeEecccC------------CccccceEEccC--CCEEEEEeC---
Q 026118           10 NHPEDVSVDGN--GVLYTATGDGWIKRMHPNG-TWEDWHQVG------------SQSLLGLTTTKE--NNVIIVCDS---   69 (243)
Q Consensus        10 ~~p~~i~~d~~--g~l~~~~~~~~i~~~~~~g-~~~~~~~~~------------~~~~~~i~~~~~--g~l~~v~~~---   69 (243)
                      .+-.+|++++.  ..+|++...++|++-...| +++......            .... .|++++.  +.+ |++..   
T Consensus        21 g~i~~i~~~p~~~~~~y~~~~~ggv~~S~DgG~tW~~~~~~~~~~~~~~~~~~~~~~~-~ia~dp~~~~~~-~~~~g~~~   98 (763)
T 3a0f_A           21 GFISGLVAHPTEKDLIYARTDIGGTYRWNAAKWEWEPITDFIINNALAGNGANLLGTE-SIALDPHNPDRL-YLAQGDYV   98 (763)
T ss_dssp             SCEEEEEECSSSTTCEEEEESSSCEEEEETTTTEEEESCTTCBTTCSSSCCCCCCSEE-EEECCTTCTTCE-EEEECSCT
T ss_pred             CceeEEEeCCCCCCEEEEEeccCcEEEECCCCCCeeECccCccccccCCCccccccee-EEEECCCCCCEE-EEEecccc
Confidence            35668999974  4799998778898887444 455543311            1123 6778863  455 88764   


Q ss_pred             ----CCcEEEEecCC--cEEEEeccCCC---c-ccCCccEEEcCC--CcEEEEeCCCCCCcccccccccccCCCceEEEE
Q 026118           70 ----QQGLLKVSEEG--VTVLVSQFNGS---Q-LRFANDVIEASD--GSLYFTVSSTKFTPAEYYLDLVSGEPHGVLLKY  137 (243)
Q Consensus        70 ----~~gl~~~~~~g--~~~~~~~~~~~---~-~~~~~~l~~d~~--G~l~v~~~~~~~~~~~~~~~~~~~~~~g~v~~~  137 (243)
                          ..+|++-.+.|  .+.+.......   . ......|++++.  +.+|++..                  .+.||+=
T Consensus        99 ~~~~~~~i~~S~DgG~TW~~~~~~~~~~~~~~g~~~~~~l~v~p~~~~~v~a~~~------------------~~~l~~S  160 (763)
T 3a0f_A           99 QWDPWAAFLVSDDRGKTFKQYRSPVPMGANDMGRNGGERLAVNPHWTDELWFGSR------------------TQGLWRS  160 (763)
T ss_dssp             TTCSCCEEEEESSTTSSCEEEECSSCCCTTSTTTTSBCCEEECTTSTTCEEEECS------------------SSCEEEE
T ss_pred             cCCCCceEEEECCCCCCceeccCCcccCccccCccccceEEECCCCCCEEEEEeC------------------CCcEEEE
Confidence                24566655545  55544211100   0 011136888874  67888731                  2467754


Q ss_pred             eCCCCeeEEeeccc------cccceEEEcCC-CCEEEEEEcCCCeEEE
Q 026118          138 DPSTNQTSLVLDGL------YFANGVALSED-ERFLVVCESWKFRCVK  178 (243)
Q Consensus       138 ~~~~~~~~~~~~~~------~~~~gi~~~~d-g~~l~v~~~~~~~i~~  178 (243)
                      +-.+..++.+..-.      .....|+++|. .+.+|++....+.|++
T Consensus       161 ~DgG~TW~~~~~~~~~~~~~~~~~~i~~~p~~~~~~~~~~~~~g~v~~  208 (763)
T 3a0f_A          161 TDRAQTWSRMNQLPDSSTYGIGIISVIFDPKNVGTAYVASHAVGGLWV  208 (763)
T ss_dssp             SSTTSSCEECTTSCCCSCTTTCEEEEEECSSSTTCEEEEESSTTCEEE
T ss_pred             CCCCcCccccccCcccCCCccceEEEEECCCCCCEEEEEEeCCCeEEE
Confidence            33333444432100      12345778764 3348888654323543

>1k3i_A Galactose oxidase precursor; blade beta propeller, prosequence form, precursor of copper enzyme., oxidoreductase; 1.40A {Fusarium SP} SCOP: b.1.18.2 b.18.1.1 b.69.1.1 PDB: 1gof_A 1gog_A 1goh_A 2eie_A 2jkx_A 2vz1_A 2vz3_A 2eic_A 2eib_A 1t2x_A 2eid_A 2wq8_A

Probab=92.95  E-value=2.6  Score=37.00  Aligned_cols=111  Identities=13%  Similarity=0.030  Sum_probs=63.6

Q ss_pred             ceEEcc-CCCEEEEEe-CC-----------CcEEEEe-cCC-cEEEEeccCCCcccCCccEEEcCCCcEEEEeCCCCCCc
Q 026118           54 GLTTTK-ENNVIIVCD-SQ-----------QGLLKVS-EEG-VTVLVSQFNGSQLRFANDVIEASDGSLYFTVSSTKFTP  118 (243)
Q Consensus        54 ~i~~~~-~g~l~~v~~-~~-----------~gl~~~~-~~g-~~~~~~~~~~~~~~~~~~l~~d~~G~l~v~~~~~~~~~  118 (243)
                      ..++.+ +|++ |+.. ..           ..+..+| .++ .+.+..... .......++++..+|+||+.--.     
T Consensus       190 ~~av~~~~g~l-~v~GG~~~~~~~~~~~~~~~~~~yd~~t~~w~~~~~~~~-~~~~~~~~~~~~~~g~lyv~GG~-----  262 (656)
T 1k3i_A          190 AAAIEPTSGRV-LMWSSYRNDAFGGSPGGITLTSSWDPSTGIVSDRTVTVT-KHDMFCPGISMDGNGQIVVTGGN-----  262 (656)
T ss_dssp             EEEEETTTTEE-EEEEECCCTTTCSCCCSEEEEEEECTTTCCBCCCEEEEC-SCCCSSCEEEECTTSCEEEECSS-----
T ss_pred             eEEEEecCCEE-EEEecccccccccCCCCeEEEEEEeCCCCcEEeCcccCC-CCCCccccccCCCCCCEEEeCCC-----
Confidence            556666 7887 5543 11           1367788 455 433322111 11223335677789999997311     


Q ss_pred             ccccccccccCCCceEEEEeCCCCeeEEeecc--ccccceEEEcCCCCEEEEEEc-CC-----CeEEEEEeec
Q 026118          119 AEYYLDLVSGEPHGVLLKYDPSTNQTSLVLDG--LYFANGVALSEDERFLVVCES-WK-----FRCVKHFLKV  183 (243)
Q Consensus       119 ~~~~~~~~~~~~~g~v~~~~~~~~~~~~~~~~--~~~~~gi~~~~dg~~l~v~~~-~~-----~~i~~~~~~~  183 (243)
                                 ....+++||+.+.+++.+..-  .....++++.++|+ +|+..- .+     ..+.+||+..
T Consensus       263 -----------~~~~v~~yd~~t~~W~~~~~~~~~R~~~s~~~~~dg~-iyv~GG~~~~~~~~~~~e~yd~~t  323 (656)
T 1k3i_A          263 -----------DAKKTSLYDSSSDSWIPGPDMQVARGYQSSATMSDGR-VFTIGGSWSGGVFEKNGEVYSPSS  323 (656)
T ss_dssp             -----------STTCEEEEEGGGTEEEECCCCSSCCSSCEEEECTTSC-EEEECCCCCSSSCCCCEEEEETTT
T ss_pred             -----------CCCceEEecCcCCceeECCCCCccccccceEEecCCe-EEEEeCcccCCcccccceEeCCCC
Confidence                       123699999998888765321  11224566667888 777643 11     5688888754

>1sqj_A OXG-RCBH, oligoxyloglucan reducing-END-specific cellobiohydrolase; beta-propeller; 2.20A {Geotrichum SP} SCOP: b.69.13.1 b.69.13.1 PDB: 2ebs_A*

Probab=91.63  E-value=5.9  Score=35.69  Aligned_cols=150  Identities=15%  Similarity=0.161  Sum_probs=79.6

Q ss_pred             ccEEEcC--CCcEEEEeCCCcEEEEccCC-ceeEecccC-----CccccceEEccC-CCEEEEEeCC-CcEEEEecCC--
Q 026118           13 EDVSVDG--NGVLYTATGDGWIKRMHPNG-TWEDWHQVG-----SQSLLGLTTTKE-NNVIIVCDSQ-QGLLKVSEEG--   80 (243)
Q Consensus        13 ~~i~~d~--~g~l~~~~~~~~i~~~~~~g-~~~~~~~~~-----~~~~~~i~~~~~-g~l~~v~~~~-~gl~~~~~~g--   80 (243)
                      +.|++++  .+.+|++...++|++-...| +++......     ......|++++. ++.+|++... .+|++-.+.|  
T Consensus       124 ~~iav~p~~~~~v~~g~~~~gl~~S~DgG~TW~~~~~~~~~~~~~~~~~~i~~~p~~~~~~~~~~~~~~~v~~S~DgG~T  203 (789)
T 1sqj_A          124 ERLAVNPFNSNEVWMGTRTEGIWKSSDRAKTWTNVTSIPDAFTNGIGYTSVIFDPERNGTIYASATAPQGMYVTHDGGVS  203 (789)
T ss_dssp             CCEEEETTEEEEEEEECSSSCEEEESSTTSSCEEETTSCCCCSTTTCEEEEEECTTSTTCEEEEESSTTCEEEESSTTSS
T ss_pred             eEEEEcCCCCCEEEEEeccCCEEEECCCCcccCCCccCccccCCCCCeEEEEECCCCCCEEEEEEcCCCeEEEEcCCCcC
Confidence            4689986  34799988667788876433 455543211     111114667753 3343888755 5676655444  


Q ss_pred             cEEEEeccCCC-------------cccCCccEEEcC-CCcEEEEeCCCCCCcccccccccccCCCceEEEEeCCCCeeEE
Q 026118           81 VTVLVSQFNGS-------------QLRFANDVIEAS-DGSLYFTVSSTKFTPAEYYLDLVSGEPHGVLLKYDPSTNQTSL  146 (243)
Q Consensus        81 ~~~~~~~~~~~-------------~~~~~~~l~~d~-~G~l~v~~~~~~~~~~~~~~~~~~~~~~g~v~~~~~~~~~~~~  146 (243)
                      .+.+.....+.             ....+..+++++ ++.+|++.....   ..+      ....+.||+-+..+..++.
T Consensus       204 W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~l~~~~~~~~---~p~------~g~~g~l~~S~DgG~tW~~  274 (789)
T 1sqj_A          204 WEPVAGQPSSWLNRTTGAFPDKKPASIAPQPMKVALTPNFLYVTYADYP---GPW------GVTFGEVWRQNRTSGAWDD  274 (789)
T ss_dssp             CEECTTCCCSCCHHHHHTSTTCCCSSSSCEEEEEEECSSEEEEEEESSC---SSS------CCCCCCEEEEETTTCCEEE
T ss_pred             cccCCCCcCccccccccccCcccccccccceeEEcCCCCeEEEEEecCC---CCC------CCCCceEEEEeCCCCceEE
Confidence            44432111110             001226778887 677888732100   000      1134678888776556665


Q ss_pred             eecccc---------------ccceEEEcCC-CCEEEEEEc
Q 026118          147 VLDGLY---------------FANGVALSED-ERFLVVCES  171 (243)
Q Consensus       147 ~~~~~~---------------~~~gi~~~~d-g~~l~v~~~  171 (243)
                      +.....               ...+|+++|. .+.+|++..
T Consensus       275 ~~~~~~~~~p~~~~~~~~~~~g~~~lav~p~~~~~v~~~~~  315 (789)
T 1sqj_A          275 ITPRVGNSSPAPYNNQTFPAGGFCGLSVDATNPNRLVVITL  315 (789)
T ss_dssp             CCCCTTTEESCCCSSCCSCCCEEEEEEEETTEEEEEEEEEE
T ss_pred             CcCCCCccccccccccccccCceEEEEECCCCCCEEEEEEe
Confidence            432111               1146788764 345887754

>3a0f_A Xyloglucanase; beta-propeller, hydrolase; 2.50A {Geotrichum SP}

Probab=91.44  E-value=7.6  Score=34.83  Aligned_cols=100  Identities=16%  Similarity=0.165  Sum_probs=54.6

Q ss_pred             CcccEEEcC--CCcEEEEeC-------CCcEEEEccCC-ceeEecccC-------Cccc-cceEEccC--CCEEEEEeCC
Q 026118           11 HPEDVSVDG--NGVLYTATG-------DGWIKRMHPNG-TWEDWHQVG-------SQSL-LGLTTTKE--NNVIIVCDSQ   70 (243)
Q Consensus        11 ~p~~i~~d~--~g~l~~~~~-------~~~i~~~~~~g-~~~~~~~~~-------~~~~-~~i~~~~~--g~l~~v~~~~   70 (243)
                      ...+|++|+  .+.+|++..       .+.|++-...| +++....+.       ++.. ..|++++.  +.+ |++...
T Consensus        76 ~~~~ia~dp~~~~~~~~~~g~~~~~~~~~~i~~S~DgG~TW~~~~~~~~~~~~~~g~~~~~~l~v~p~~~~~v-~a~~~~  154 (763)
T 3a0f_A           76 GTESIALDPHNPDRLYLAQGDYVQWDPWAAFLVSDDRGKTFKQYRSPVPMGANDMGRNGGERLAVNPHWTDEL-WFGSRT  154 (763)
T ss_dssp             SEEEEECCTTCTTCEEEEECSCTTTCSCCEEEEESSTTSSCEEEECSSCCCTTSTTTTSBCCEEECTTSTTCE-EEECSS
T ss_pred             ceeEEEECCCCCCEEEEEecccccCCCCceEEEECCCCCCceeccCCcccCccccCccccceEEECCCCCCEE-EEEeCC
Confidence            456788887  458998763       36677775444 455543211       1111 14777754  456 888755


Q ss_pred             CcEEEEecCC--cEEEEeccCC-CcccCCccEEEcCC--CcEEEEe
Q 026118           71 QGLLKVSEEG--VTVLVSQFNG-SQLRFANDVIEASD--GSLYFTV  111 (243)
Q Consensus        71 ~gl~~~~~~g--~~~~~~~~~~-~~~~~~~~l~~d~~--G~l~v~~  111 (243)
                      .+|++-.+.|  .+.+...... ........|+++|.  +.+|++.
T Consensus       155 ~~l~~S~DgG~TW~~~~~~~~~~~~~~~~~~i~~~p~~~~~~~~~~  200 (763)
T 3a0f_A          155 QGLWRSTDRAQTWSRMNQLPDSSTYGIGIISVIFDPKNVGTAYVAS  200 (763)
T ss_dssp             SCEEEESSTTSSCEECTTSCCCSCTTTCEEEEEECSSSTTCEEEEE
T ss_pred             CcEEEECCCCcCccccccCcccCCCccceEEEEECCCCCCEEEEEE
Confidence            6777765545  4443211111 01123446678764  4688874

>2uvk_A YJHT; unknown function, hypothetical protein, sialic acid metabolism, kelch repeat, beta-propeller; HET: MSE; 1.50A {Escherichia coli}

Probab=90.47  E-value=5.6  Score=31.57  Aligned_cols=158  Identities=15%  Similarity=0.090  Sum_probs=77.7

Q ss_pred             EEEcCCCcEEEEe--CCCcEEEEccC---CceeEecccC--CccccceEEccCCCEEEEEeCC-----------CcEEEE
Q 026118           15 VSVDGNGVLYTAT--GDGWIKRMHPN---GTWEDWHQVG--SQSLLGLTTTKENNVIIVCDSQ-----------QGLLKV   76 (243)
Q Consensus        15 i~~d~~g~l~~~~--~~~~i~~~~~~---g~~~~~~~~~--~~~~~~i~~~~~g~l~~v~~~~-----------~gl~~~   76 (243)
                      .++--++.||+..  ....++++|+.   .++.......  .+...+++. -++++ |+....           ..++++
T Consensus        14 ~~~~~~~~iyv~GG~~~~~~~~~d~~~~~~~W~~~~~~p~~~R~~~~~~~-~~~~l-yv~GG~~~~~~~~~~~~~~v~~y   91 (357)
T 2uvk_A           14 TGAIDNDTVYIGLGSAGTAWYKLDTQAKDKKWTALAAFPGGPRDQATSAF-IDGNL-YVFGGIGKNSEGLTQVFNDVHKY   91 (357)
T ss_dssp             EEEEETTEEEEECGGGTTCEEEEETTSSSCCEEECCCCTTCCCBSCEEEE-ETTEE-EEECCEEECTTSCEEECCCEEEE
T ss_pred             EEEEECCEEEEEeCcCCCeEEEEccccCCCCeeECCCCCCCcCccceEEE-ECCEE-EEEcCCCCCCCccceeeccEEEE
Confidence            3333377898764  34579999953   5666554322  121112333 35666 775432           237888


Q ss_pred             e-cCC-cEEEEeccCCCcccCCccEEEcCCCcEEEEeCCCCCCcccccc---cc----------------------cccC
Q 026118           77 S-EEG-VTVLVSQFNGSQLRFANDVIEASDGSLYFTVSSTKFTPAEYYL---DL----------------------VSGE  129 (243)
Q Consensus        77 ~-~~g-~~~~~~~~~~~~~~~~~~l~~d~~G~l~v~~~~~~~~~~~~~~---~~----------------------~~~~  129 (243)
                      | .+. .+.+....  +....-..+++ .++.||+..-.   .......   ++                      ....
T Consensus        92 d~~~~~W~~~~~~~--p~~r~~~~~~~-~~~~iyv~GG~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  165 (357)
T 2uvk_A           92 NPKTNSWVKLMSHA--PMGMAGHVTFV-HNGKAYVTGGV---NQNIFNGYFEDLNEAGKDSTAIDKINAHYFDKKAEDYF  165 (357)
T ss_dssp             ETTTTEEEECSCCC--SSCCSSEEEEE-ETTEEEEEECC---CHHHHHHHHHHHHHHTTCHHHHHHHHHHHHSSCGGGGC
T ss_pred             eCCCCcEEECCCCC--CcccccceEEE-ECCEEEEEeCc---CCCcCcccccchhhcCCcccchhhhhhhhccccccccC
Confidence            8 455 44433211  11122223333 67888886311   0000000   00                      0001


Q ss_pred             CCceEEEEeCCCCeeEEeeccc--ccc-ceEEEcCCCCEEEEEEc------CCCeEEEEEee
Q 026118          130 PHGVLLKYDPSTNQTSLVLDGL--YFA-NGVALSEDERFLVVCES------WKFRCVKHFLK  182 (243)
Q Consensus       130 ~~g~v~~~~~~~~~~~~~~~~~--~~~-~gi~~~~dg~~l~v~~~------~~~~i~~~~~~  182 (243)
                      ....+++||+.+.+++.+..-.  ... .+++.. +++ ||+..-      ....++.|+++
T Consensus       166 ~~~~v~~yd~~~~~W~~~~~~p~~~~~~~~~~~~-~~~-iyv~GG~~~~~~~~~~v~~~d~d  225 (357)
T 2uvk_A          166 FNKFLLSFDPSTQQWSYAGESPWYGTAGAAVVNK-GDK-TWLINGEAKPGLRTDAVFELDFT  225 (357)
T ss_dssp             CCCEEEEEETTTTEEEEEEECSSCCCBSCEEEEE-TTE-EEEECCEEETTEECCCEEEEECC
T ss_pred             CcccEEEEeCCCCcEEECCCCCCCCcccccEEEE-CCE-EEEEeeecCCCcccCceEEEEec
Confidence            2357999999998888764321  111 344443 444 887631      13568888764

>2vpj_A Kelch-like protein 12; adaptor protein, WNT signaling pathway, protein-binding, UBI degradation, UBL conjugation pathway, CUL3, kelch repeat; 1.85A {Homo sapiens}

Probab=89.60  E-value=5.8  Score=30.52  Aligned_cols=145  Identities=15%  Similarity=0.138  Sum_probs=74.3

Q ss_pred             CCCcEEEEe-C-----CCcEEEEcc-CCc---eeEecccC-CccccceEEccCCCEEEEEeCC------CcEEEEe-cCC
Q 026118           19 GNGVLYTAT-G-----DGWIKRMHP-NGT---WEDWHQVG-SQSLLGLTTTKENNVIIVCDSQ------QGLLKVS-EEG   80 (243)
Q Consensus        19 ~~g~l~~~~-~-----~~~i~~~~~-~g~---~~~~~~~~-~~~~~~i~~~~~g~l~~v~~~~------~gl~~~~-~~g   80 (243)
                      .++.||+.. .     ...++++|+ +.+   +....... .+...+++. -++++ |+....      ..++++| .+.
T Consensus        61 ~~~~l~v~GG~~~~~~~~~~~~~d~~~~~~~~W~~~~~~p~~r~~~~~~~-~~~~l-yv~GG~~~~~~~~~~~~~d~~~~  138 (301)
T 2vpj_A           61 LHDRIYVIGGYDGRSRLSSVECLDYTADEDGVWYSVAPMNVRRGLAGATT-LGDMI-YVSGGFDGSRRHTSMERYDPNID  138 (301)
T ss_dssp             ETTEEEEECCBCSSCBCCCEEEEETTCCTTCCCEEECCCSSCCBSCEEEE-ETTEE-EEECCBCSSCBCCEEEEEETTTT
T ss_pred             ECCEEEEEcCCCCCccCceEEEEECCCCCCCeeEECCCCCCCccceeEEE-ECCEE-EEEcccCCCcccceEEEEcCCCC
Confidence            356777643 1     135788883 455   65543211 111112333 35666 776531      2488888 555


Q ss_pred             -cEEEEeccCCCcccCCccEEEcCCCcEEEEeCCCCCCcccccccccccCCCceEEEEeCCCCeeEEeeccc--cccceE
Q 026118           81 -VTVLVSQFNGSQLRFANDVIEASDGSLYFTVSSTKFTPAEYYLDLVSGEPHGVLLKYDPSTNQTSLVLDGL--YFANGV  157 (243)
Q Consensus        81 -~~~~~~~~~~~~~~~~~~l~~d~~G~l~v~~~~~~~~~~~~~~~~~~~~~~g~v~~~~~~~~~~~~~~~~~--~~~~gi  157 (243)
                       .+.+...+..   ..-..+++ -++.+|+..-.            ........+++||+.+.+++.+..-.  .....+
T Consensus       139 ~W~~~~~~p~~---r~~~~~~~-~~~~iyv~GG~------------~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~  202 (301)
T 2vpj_A          139 QWSMLGDMQTA---REGAGLVV-ASGVIYCLGGY------------DGLNILNSVEKYDPHTGHWTNVTPMATKRSGAGV  202 (301)
T ss_dssp             EEEEEEECSSC---CBSCEEEE-ETTEEEEECCB------------CSSCBCCCEEEEETTTTEEEEECCCSSCCBSCEE
T ss_pred             eEEECCCCCCC---cccceEEE-ECCEEEEECCC------------CCCcccceEEEEeCCCCcEEeCCCCCcccccceE
Confidence             5554432211   12223232 36788886211            00112356999999988888763211  111233


Q ss_pred             EEcCCCCEEEEEEcC-----CCeEEEEEeec
Q 026118          158 ALSEDERFLVVCESW-----KFRCVKHFLKV  183 (243)
Q Consensus       158 ~~~~dg~~l~v~~~~-----~~~i~~~~~~~  183 (243)
                      +.. +++ ||+..-.     .+.+++||+..
T Consensus       203 ~~~-~~~-i~v~GG~~~~~~~~~v~~yd~~~  231 (301)
T 2vpj_A          203 ALL-NDH-IYVVGGFDGTAHLSSVEAYNIRT  231 (301)
T ss_dssp             EEE-TTE-EEEECCBCSSSBCCCEEEEETTT
T ss_pred             EEE-CCE-EEEEeCCCCCcccceEEEEeCCC
Confidence            332 444 8876432     35688898764

>1zgk_A Kelch-like ECH-associated protein 1; beta-propeller, kelch repeat motif, protein binding; HET: MSE; 1.35A {Homo sapiens} SCOP: b.68.11.1 PDB: 2flu_X 1u6d_X 1x2j_A 1x2r_A 2dyh_A 2z32_A 3ade_A

Probab=89.57  E-value=6.1  Score=30.67  Aligned_cols=144  Identities=11%  Similarity=0.182  Sum_probs=72.9

Q ss_pred             CCcEEEEe-C---------CCcEEEEcc-CCceeEecccC-CccccceEEccCCCEEEEEeCC------CcEEEEe-cCC
Q 026118           20 NGVLYTAT-G---------DGWIKRMHP-NGTWEDWHQVG-SQSLLGLTTTKENNVIIVCDSQ------QGLLKVS-EEG   80 (243)
Q Consensus        20 ~g~l~~~~-~---------~~~i~~~~~-~g~~~~~~~~~-~~~~~~i~~~~~g~l~~v~~~~------~gl~~~~-~~g   80 (243)
                      ++.||+-. .         ...++++|+ ..++....... .+...+++. -++++ |+....      ..+.++| .+.
T Consensus        70 ~~~lyv~GG~~~~~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~-~~~~i-yv~GG~~~~~~~~~~~~yd~~~~  147 (308)
T 1zgk_A           70 GGLLYAVGGRNNSPDGNTDSSALDCYNPMTNQWSPCAPMSVPRNRIGVGV-IDGHI-YAVGGSHGCIHHNSVERYEPERD  147 (308)
T ss_dssp             TTEEEEECCEEEETTEEEECCCEEEEETTTTEEEECCCCSSCCBTCEEEE-ETTEE-EEECCEETTEECCCEEEEETTTT
T ss_pred             CCEEEEECCCcCCCCCCeecceEEEECCCCCeEeECCCCCcCccccEEEE-ECCEE-EEEcCCCCCcccccEEEECCCCC
Confidence            56787653 1         134778884 55565543211 111112332 35667 776431      3478888 455


Q ss_pred             -cEEEEeccCCCcccCCccEEEcCCCcEEEEeCCCCCCcccccccccccCCCceEEEEeCCCCeeEEeecc--ccccceE
Q 026118           81 -VTVLVSQFNGSQLRFANDVIEASDGSLYFTVSSTKFTPAEYYLDLVSGEPHGVLLKYDPSTNQTSLVLDG--LYFANGV  157 (243)
Q Consensus        81 -~~~~~~~~~~~~~~~~~~l~~d~~G~l~v~~~~~~~~~~~~~~~~~~~~~~g~v~~~~~~~~~~~~~~~~--~~~~~gi  157 (243)
                       .+.+...+.   ...-..+++. ++.+|+..-.            ........+++||+.+.+++.+..-  .....++
T Consensus       148 ~W~~~~~~p~---~r~~~~~~~~-~~~iyv~GG~------------~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~  211 (308)
T 1zgk_A          148 EWHLVAPMLT---RRIGVGVAVL-NRLLYAVGGF------------DGTNRLNSAECYYPERNEWRMITAMNTIRSGAGV  211 (308)
T ss_dssp             EEEECCCCSS---CCBSCEEEEE-TTEEEEECCB------------CSSCBCCCEEEEETTTTEEEECCCCSSCCBSCEE
T ss_pred             eEeECCCCCc---cccceEEEEE-CCEEEEEeCC------------CCCCcCceEEEEeCCCCeEeeCCCCCCccccceE
Confidence             444332111   1122233332 6788886211            0001135699999998888765321  1111233


Q ss_pred             EEcCCCCEEEEEEcC-----CCeEEEEEeec
Q 026118          158 ALSEDERFLVVCESW-----KFRCVKHFLKV  183 (243)
Q Consensus       158 ~~~~dg~~l~v~~~~-----~~~i~~~~~~~  183 (243)
                      +.. +++ ||+..-.     .+.+++||+..
T Consensus       212 ~~~-~~~-iyv~GG~~~~~~~~~v~~yd~~~  240 (308)
T 1zgk_A          212 CVL-HNC-IYAAGGYDGQDQLNSVERYDVET  240 (308)
T ss_dssp             EEE-TTE-EEEECCBCSSSBCCCEEEEETTT
T ss_pred             EEE-CCE-EEEEeCCCCCCccceEEEEeCCC
Confidence            333 454 8876422     25689998764

>3sbq_A Nitrous-oxide reductase; beta-propeller, cupredoxin domain, copper-contain periplasmic, oxidoreductase; 1.70A {Pseudomonas stutzeri} PDB: 3sbp_A 3sbr_A 1qni_A

Probab=88.59  E-value=1.6  Score=37.67  Aligned_cols=87  Identities=11%  Similarity=0.113  Sum_probs=58.8

Q ss_pred             eEEEEeCCC----C-eeEEeeccccccceEEEcCCCCEEEEEEcCCCeEEEEEeec------CCC-c-ceEEeccC-CCC
Q 026118          133 VLLKYDPST----N-QTSLVLDGLYFANGVALSEDERFLVVCESWKFRCVKHFLKV------SGR-T-DREIFIDN-LPG  198 (243)
Q Consensus       133 ~v~~~~~~~----~-~~~~~~~~~~~~~gi~~~~dg~~l~v~~~~~~~i~~~~~~~------~~~-~-~~~~~~~~-~~~  198 (243)
                      +|-.+|...    + .+..+......|+|+-++|||++++++.-....+.+|+...      +.+ . ...+.... ..-
T Consensus       299 gv~ViD~~~~~~~~~~~~~~iP~pksPHGv~vsPDGkyi~v~GKLsptvtV~d~~k~~~~~~~k~~~~~~~~~ae~e~Gl  378 (638)
T 3sbq_A          299 KTPVLDGRKKDGKDSKFTRYVPVPKNPHGCNTSSDGKYFIAAGKLSPTCSMIAIDKLPDLFAGKLADPRDVIVGEPELGL  378 (638)
T ss_dssp             CCCEEECSCBTTBCCSSEEEEEESSSCCCEEECTTSCEEEEECTTSSBEEEEEGGGHHHHHTTCCSCGGGGEEECCBCCS
T ss_pred             CeeEEccccccccCCceEEEEeCCCCCcceeeCCCCCEEEEcCCCCCeEEEEEeehhhhhhhccccCcccceEeeccCCC
Confidence            466677754    1 23344455678999999999999999998889999999863      111 1 01111111 222


Q ss_pred             CCCceEECCCCCEEEEEecCC
Q 026118          199 GPDNVNLARDGSFWISIIKMD  219 (243)
Q Consensus       199 ~~~~i~~d~~G~lwv~~~~~~  219 (243)
                      .|--.++|.+|+.|.+.+-.+
T Consensus       379 GPlHt~Fd~~G~aYTtlfidS  399 (638)
T 3sbq_A          379 GPLHTTFDGRGNAYTTLFIDS  399 (638)
T ss_dssp             CEEEEEECSSSEEEEEETTTT
T ss_pred             cccEEEECCCCceEeeeeecc
Confidence            577799999999999876554

>2be1_A Serine/threonine-protein kinase/endoribonuclease; transcription; 2.98A {Saccharomyces cerevisiae}

Probab=84.68  E-value=1.1  Score=36.03  Aligned_cols=66  Identities=14%  Similarity=0.122  Sum_probs=35.4

Q ss_pred             EEEEeCCCcEEEEe-cCC-cEEEEeccCCCcccCCccEEEcCCCcEEEEeCCCCCCcccccccccccCCCceEEEEeCCC
Q 026118           64 IIVCDSQQGLLKVS-EEG-VTVLVSQFNGSQLRFANDVIEASDGSLYFTVSSTKFTPAEYYLDLVSGEPHGVLLKYDPST  141 (243)
Q Consensus        64 ~~v~~~~~gl~~~~-~~g-~~~~~~~~~~~~~~~~~~l~~d~~G~l~v~~~~~~~~~~~~~~~~~~~~~~g~v~~~~~~~  141 (243)
                      +|+++.++.|+.+| .+| .+.-.......+.....+-....+|.+|+...                ..+|.||.++.++
T Consensus        13 V~v~t~dG~l~Ald~~tG~~~W~~~~~~~~p~~~~~~~~~~~~~~~~vv~p----------------~~dG~l~a~~~~~   76 (339)
T 2be1_A           13 LIAADVEGGLHAVDRRNGHIIWSIEPENFQPLIEIQEPSRLETYETLIIEP----------------FGDGNIYYFNAHQ   76 (339)
T ss_dssp             EEEEETTSCEEEEETTTTEEEEEECGGGSCCSEECCCSCTTTSSEEEEECC----------------STTTEEEEEETTT
T ss_pred             EEEEeCCCeEEEEECCCCcEEEEecCCccCCcEEecCCccccCCcEEEEEE----------------CCCCEEEEEECCC
Confidence            38888888899999 778 44433221000100000000112456777632                1357899999887


Q ss_pred             CeeE
Q 026118          142 NQTS  145 (243)
Q Consensus       142 ~~~~  145 (243)
                      |..+
T Consensus        77 G~~~   80 (339)
T 2be1_A           77 GLQK   80 (339)
T ss_dssp             EEEE
T ss_pred             CcEE
Confidence            7443

>1zgk_A Kelch-like ECH-associated protein 1; beta-propeller, kelch repeat motif, protein binding; HET: MSE; 1.35A {Homo sapiens} SCOP: b.68.11.1 PDB: 2flu_X 1u6d_X 1x2j_A 1x2r_A 2dyh_A 2z32_A 3ade_A

Probab=83.61  E-value=13  Score=28.64  Aligned_cols=144  Identities=19%  Similarity=0.196  Sum_probs=72.0

Q ss_pred             CCcEEEEeC-----CCcEEEEcc-CCceeEecccC-CccccceEEccCCCEEEEEeCC----------CcEEEEe-cCC-
Q 026118           20 NGVLYTATG-----DGWIKRMHP-NGTWEDWHQVG-SQSLLGLTTTKENNVIIVCDSQ----------QGLLKVS-EEG-   80 (243)
Q Consensus        20 ~g~l~~~~~-----~~~i~~~~~-~g~~~~~~~~~-~~~~~~i~~~~~g~l~~v~~~~----------~gl~~~~-~~g-   80 (243)
                      ++.||+-..     ...+.++|+ .+++....... .+...+++. .++++ |+....          ..++++| .+. 
T Consensus        24 ~~~i~v~GG~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~-~~~~l-yv~GG~~~~~~~~~~~~~~~~~d~~~~~  101 (308)
T 1zgk_A           24 GRLIYTAGGYFRQSLSYLEAYNPSNGTWLRLADLQVPRSGLAGCV-VGGLL-YAVGGRNNSPDGNTDSSALDCYNPMTNQ  101 (308)
T ss_dssp             CCCEEEECCBSSSBCCCEEEEETTTTEEEECCCCSSCCBSCEEEE-ETTEE-EEECCEEEETTEEEECCCEEEEETTTTE
T ss_pred             CCEEEEEeCcCCCCcceEEEEcCCCCeEeECCCCCcccccceEEE-ECCEE-EEECCCcCCCCCCeecceEEEECCCCCe
Confidence            567776431     235788884 55666543211 111112333 35566 666432          2478888 455 


Q ss_pred             cEEEEeccCCCcccCCccEEEcCCCcEEEEeCCCCCCcccccccccccCCCceEEEEeCCCCeeEEeeccc--cccceEE
Q 026118           81 VTVLVSQFNGSQLRFANDVIEASDGSLYFTVSSTKFTPAEYYLDLVSGEPHGVLLKYDPSTNQTSLVLDGL--YFANGVA  158 (243)
Q Consensus        81 ~~~~~~~~~~~~~~~~~~l~~d~~G~l~v~~~~~~~~~~~~~~~~~~~~~~g~v~~~~~~~~~~~~~~~~~--~~~~gi~  158 (243)
                      .+.+...+.   ...-.++++ -++.+|+.--.     .       .......+++||+.+.+++.+..-.  .....++
T Consensus       102 W~~~~~~p~---~r~~~~~~~-~~~~iyv~GG~-----~-------~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~  165 (308)
T 1zgk_A          102 WSPCAPMSV---PRNRIGVGV-IDGHIYAVGGS-----H-------GCIHHNSVERYEPERDEWHLVAPMLTRRIGVGVA  165 (308)
T ss_dssp             EEECCCCSS---CCBTCEEEE-ETTEEEEECCE-----E-------TTEECCCEEEEETTTTEEEECCCCSSCCBSCEEE
T ss_pred             EeECCCCCc---CccccEEEE-ECCEEEEEcCC-----C-------CCcccccEEEECCCCCeEeECCCCCccccceEEE
Confidence            444332111   112223333 36788886210     0       0011246899999988887764211  1112333


Q ss_pred             EcCCCCEEEEEEcC-----CCeEEEEEeec
Q 026118          159 LSEDERFLVVCESW-----KFRCVKHFLKV  183 (243)
Q Consensus       159 ~~~dg~~l~v~~~~-----~~~i~~~~~~~  183 (243)
                      .. +++ ||+..-.     .+.+++||+..
T Consensus       166 ~~-~~~-iyv~GG~~~~~~~~~~~~yd~~~  193 (308)
T 1zgk_A          166 VL-NRL-LYAVGGFDGTNRLNSAECYYPER  193 (308)
T ss_dssp             EE-TTE-EEEECCBCSSCBCCCEEEEETTT
T ss_pred             EE-CCE-EEEEeCCCCCCcCceEEEEeCCC
Confidence            33 454 8876321     35688888754

>1xip_A Nucleoporin NUP159; beta-propeller, transport protein; 2.50A {Saccharomyces cerevisiae} SCOP: b.69.14.1 PDB: 3pez_C* 3rrm_C*

Probab=82.76  E-value=18  Score=29.52  Aligned_cols=128  Identities=9%  Similarity=0.092  Sum_probs=74.5

Q ss_pred             cCCcccEEEcCCCcEEEEeCCCcEEEEccC-C-ceeEecccCCccccceEEccCCCEEEEEeCCCcEEEEe-cCC-cEEE
Q 026118            9 VNHPEDVSVDGNGVLYTATGDGWIKRMHPN-G-TWEDWHQVGSQSLLGLTTTKENNVIIVCDSQQGLLKVS-EEG-VTVL   84 (243)
Q Consensus         9 ~~~p~~i~~d~~g~l~~~~~~~~i~~~~~~-g-~~~~~~~~~~~~~~~i~~~~~g~l~~v~~~~~gl~~~~-~~g-~~~~   84 (243)
                      +..+..|++ .+..|+++ .++.|..++.. - +....... ..+...+...+. ++ .+++..+.|+.++ .++ ...+
T Consensus        87 lp~V~~l~f-d~~~L~v~-~~~~l~v~dv~sl~~~~~~~~~-~~~v~~i~~~~p-~~-av~~~dG~L~v~dl~~~~~~~~  161 (388)
T 1xip_A           87 IPDVIFVCF-HGDQVLVS-TRNALYSLDLEELSEFRTVTSF-EKPVFQLKNVNN-TL-VILNSVNDLSALDLRTKSTKQL  161 (388)
T ss_dssp             CTTEEEEEE-ETTEEEEE-ESSEEEEEESSSTTCEEEEEEC-SSCEEEEEECSS-EE-EEEETTSEEEEEETTTCCEEEE
T ss_pred             CCCeeEEEE-CCCEEEEE-cCCcEEEEEchhhhccCcccee-ecceeeEEecCC-CE-EEEECCCCEEEEEccCCccccc
Confidence            344778888 33467787 67889999832 1 11111111 112214444332 35 6777666788888 655 4332


Q ss_pred             EeccCCCcccCCccEEEcCCCcEEEEeCCCCCCcccccccccccCCCceEEEEeCCCCee--E-Eee-----c----ccc
Q 026118           85 VSQFNGSQLRFANDVIEASDGSLYFTVSSTKFTPAEYYLDLVSGEPHGVLLKYDPSTNQT--S-LVL-----D----GLY  152 (243)
Q Consensus        85 ~~~~~~~~~~~~~~l~~d~~G~l~v~~~~~~~~~~~~~~~~~~~~~~g~v~~~~~~~~~~--~-~~~-----~----~~~  152 (243)
                      .        ..+.+++++++| +.++-                  ..+.+..|++++++.  + .+.     .    +..
T Consensus       162 ~--------~~Vs~v~WSpkG-~~vg~------------------~dg~i~~~~~~~~~~~~k~~I~~Pp~~~~~~~~~~  214 (388)
T 1xip_A          162 A--------QNVTSFDVTNSQ-LAVLL------------------KDRSFQSFAWRNGEMEKQFEFSLPSELEELPVEEY  214 (388)
T ss_dssp             E--------ESEEEEEECSSE-EEEEE------------------TTSCEEEEEEETTEEEEEEEECCCHHHHTSCTTTS
T ss_pred             c--------CCceEEEEcCCc-eEEEE------------------cCCcEEEEcCCCccccccceecCCcccccccCCCe
Confidence            2        346689999999 55542                  235677778877774  2 231     1    234


Q ss_pred             ccceEEEcCCCCEEEE
Q 026118          153 FANGVALSEDERFLVV  168 (243)
Q Consensus       153 ~~~gi~~~~dg~~l~v  168 (243)
                      .+.+|.|.++++++.+
T Consensus       215 ~V~sI~wl~~~~flv~  230 (388)
T 1xip_A          215 SPLSVTILSPQDFLAV  230 (388)
T ss_dssp             EEEEEEESSSSEEEEE
T ss_pred             eEEEEEEecCCeEEEE
Confidence            5678999988875544

>2zwa_A Leucine carboxyl methyltransferase 2; HET: SAH CIT; 1.70A {Saccharomyces cerevisiae} PDB: 2zw9_A* 2zzk_A*

Probab=82.54  E-value=25  Score=31.04  Aligned_cols=147  Identities=10%  Similarity=0.085  Sum_probs=80.2

Q ss_pred             CCCcEEEEeC-----CCcEEEEc-cCCceeEec-c------cCCccccceEEcc-CCCEEEEEeCC-------CcEEEEe
Q 026118           19 GNGVLYTATG-----DGWIKRMH-PNGTWEDWH-Q------VGSQSLLGLTTTK-ENNVIIVCDSQ-------QGLLKVS   77 (243)
Q Consensus        19 ~~g~l~~~~~-----~~~i~~~~-~~g~~~~~~-~------~~~~~~~~i~~~~-~g~l~~v~~~~-------~gl~~~~   77 (243)
                      .++.||+...     ...++++| ..+++.... .      +..+...+++.-. ++++ |+....       ..++++|
T Consensus       396 ~~~~iyv~GG~~~~~~~~v~~yd~~~~~W~~~~~~~p~~~~p~~R~~hs~~~~~~~~~l-yv~GG~~~~~~~~~dv~~yd  474 (695)
T 2zwa_A          396 AGNDVFYMGGSNPYRVNEILQLSIHYDKIDMKNIEVSSSEVPVARMCHTFTTISRNNQL-LLIGGRKAPHQGLSDNWIFD  474 (695)
T ss_dssp             CSSCEEEECCBSSSBCCCEEEEEECSSCEEEEECCCCCSCCCCCCBSCEEEEETTTTEE-EEECCBSSTTCBCCCCEEEE
T ss_pred             ECCEEEEECCCCCCCcCcEEEEECCCCeEEEeccCCCCCCCCccccceEEEEEccCCEE-EEEcCCCCCCCccccEEEEe
Confidence            4667886542     13478888 466676654 2      1112121344433 6777 776532       2378888


Q ss_pred             -cCC-cEEEEeccCCCcccCCccEEEcCCCcEEEEeCCCCCCcccccccccccCCCceEEEEeCCCCeeEEeecc--c--
Q 026118           78 -EEG-VTVLVSQFNGSQLRFANDVIEASDGSLYFTVSSTKFTPAEYYLDLVSGEPHGVLLKYDPSTNQTSLVLDG--L--  151 (243)
Q Consensus        78 -~~g-~~~~~~~~~~~~~~~~~~l~~d~~G~l~v~~~~~~~~~~~~~~~~~~~~~~g~v~~~~~~~~~~~~~~~~--~--  151 (243)
                       .+. .+.+...+   ....-.++++-.+|.+|+..-.               .....+++||+.+.+++.+...  .  
T Consensus       475 ~~t~~W~~~~~~p---~~R~~h~~~~~~~~~iyv~GG~---------------~~~~~v~~yd~~t~~W~~~~~~g~~p~  536 (695)
T 2zwa_A          475 MKTREWSMIKSLS---HTRFRHSACSLPDGNVLILGGV---------------TEGPAMLLYNVTEEIFKDVTPKDEFFQ  536 (695)
T ss_dssp             TTTTEEEECCCCS---BCCBSCEEEECTTSCEEEECCB---------------CSSCSEEEEETTTTEEEECCCSSGGGG
T ss_pred             CCCCcEEECCCCC---CCcccceEEEEcCCEEEEECCC---------------CCCCCEEEEECCCCceEEccCCCCCCC
Confidence             554 44432211   1122234444358889986211               0011699999999888876531  1  


Q ss_pred             --cccceEEEcCCCCEEEEEEcC-------CCeEEEEEeecC
Q 026118          152 --YFANGVALSEDERFLVVCESW-------KFRCVKHFLKVS  184 (243)
Q Consensus       152 --~~~~gi~~~~dg~~l~v~~~~-------~~~i~~~~~~~~  184 (243)
                        .....++++.+.+.||+..-.       .+.+++|++...
T Consensus       537 ~r~~~~a~v~~~~~~~iyv~GG~~~~~~~~~~~v~~yd~~~~  578 (695)
T 2zwa_A          537 NSLVSAGLEFDPVSKQGIILGGGFMDQTTVSDKAIIFKYDAE  578 (695)
T ss_dssp             SCCBSCEEEEETTTTEEEEECCBCTTSSCBCCEEEEEEECTT
T ss_pred             cccceeEEEEeCCCCEEEEECCcCCCCCeeeCcEEEEEccCC
Confidence              122335656653448887422       356999998764

>4asc_A Kelch repeat and BTB domain-containing protein 5; protein binding, cytoskeleton; 1.78A {Homo sapiens}

Probab=82.13  E-value=16  Score=28.33  Aligned_cols=162  Identities=10%  Similarity=0.050  Sum_probs=76.6

Q ss_pred             EEEEcc-CCceeEecccC-CccccceEEccCCCEEEEEeCC---------CcEEEEe-cCC-cEEEEeccCCCcccCCcc
Q 026118           32 IKRMHP-NGTWEDWHQVG-SQSLLGLTTTKENNVIIVCDSQ---------QGLLKVS-EEG-VTVLVSQFNGSQLRFAND   98 (243)
Q Consensus        32 i~~~~~-~g~~~~~~~~~-~~~~~~i~~~~~g~l~~v~~~~---------~gl~~~~-~~g-~~~~~~~~~~~~~~~~~~   98 (243)
                      ++++|+ .+++....... .+...+++. -++++ |+....         ..++++| .++ .+.+...+.   ...-..
T Consensus        69 ~~~~d~~~~~W~~~~~~p~~r~~~~~~~-~~~~l-yv~GG~~~~~~~~~~~~~~~~d~~~~~W~~~~~~p~---~r~~~~  143 (315)
T 4asc_A           69 FLQFDHLDSEWLGMPPLPSPRCLFGLGE-ALNSI-YVVGGREIKDGERCLDSVMCYDRLSFKWGESDPLPY---VVYGHT  143 (315)
T ss_dssp             EEEEETTTTEEEECCCBSSCEESCEEEE-ETTEE-EEECCEESSTTCCBCCCEEEEETTTTEEEECCCCSS---CCBSCE
T ss_pred             eEEecCCCCeEEECCCCCcchhceeEEE-ECCEE-EEEeCCcCCCCCcccceEEEECCCCCcEeECCCCCC---ccccee
Confidence            677884 55665543211 111112333 35566 776531         2388888 555 444332111   122223


Q ss_pred             EEEcCCCcEEEEeCCCCCCcccccccccccCCCceEEEEeCCCCeeEEeeccc--cccceEEEcCCCCEEEEEEcCC---
Q 026118           99 VIEASDGSLYFTVSSTKFTPAEYYLDLVSGEPHGVLLKYDPSTNQTSLVLDGL--YFANGVALSEDERFLVVCESWK---  173 (243)
Q Consensus        99 l~~d~~G~l~v~~~~~~~~~~~~~~~~~~~~~~g~v~~~~~~~~~~~~~~~~~--~~~~gi~~~~dg~~l~v~~~~~---  173 (243)
                      ++ .-++++|+..-.   .        ........+++||+.+.+++.+..-.  ....+++.. +++ ||+..-.+   
T Consensus       144 ~~-~~~~~iyv~GG~---~--------~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~~-~~~-iyv~GG~~~~~  209 (315)
T 4asc_A          144 VL-SHMDLVYVIGGK---G--------SDRKCLNKMCVYDPKKFEWKELAPMQTARSLFGATVH-DGR-IIVAAGVTDTG  209 (315)
T ss_dssp             EE-EETTEEEEECCB---C--------TTSCBCCCEEEEETTTTEEEECCCCSSCCBSCEEEEE-TTE-EEEEEEECSSS
T ss_pred             EE-EECCEEEEEeCC---C--------CCCcccceEEEEeCCCCeEEECCCCCCchhceEEEEE-CCE-EEEEeccCCCC
Confidence            33 356788886211   0        01122357999999988887764211  111233332 455 77764221   


Q ss_pred             --CeEEEEEeecCCCcceEEeccCCCCCC-CceEECCCCCEEEEEe
Q 026118          174 --FRCVKHFLKVSGRTDREIFIDNLPGGP-DNVNLARDGSFWISII  216 (243)
Q Consensus       174 --~~i~~~~~~~~~~~~~~~~~~~~~~~~-~~i~~d~~G~lwv~~~  216 (243)
                        +.+++||+...   .++.+......+. ..++. -+++||+-..
T Consensus       210 ~~~~~~~yd~~~~---~W~~~~~~p~~r~~~~~~~-~~~~l~v~GG  251 (315)
T 4asc_A          210 LTSSAEVYSITDN---KWAPFEAFPQERSSLSLVS-LVGTLYAIGG  251 (315)
T ss_dssp             EEEEEEEEETTTT---EEEEECCCSSCCBSCEEEE-ETTEEEEEEE
T ss_pred             ccceEEEEECCCC---eEEECCCCCCcccceeEEE-ECCEEEEECC
Confidence              35788886542   3333332111111 12332 3567777543

>4asc_A Kelch repeat and BTB domain-containing protein 5; protein binding, cytoskeleton; 1.78A {Homo sapiens}

Probab=81.20  E-value=17  Score=28.12  Aligned_cols=131  Identities=9%  Similarity=-0.033  Sum_probs=64.0

Q ss_pred             CCcEEEEeC---------CCcEEEEcc-CCceeEecccC-CccccceEEccCCCEEEEEeCC-------CcEEEEe-cCC
Q 026118           20 NGVLYTATG---------DGWIKRMHP-NGTWEDWHQVG-SQSLLGLTTTKENNVIIVCDSQ-------QGLLKVS-EEG   80 (243)
Q Consensus        20 ~g~l~~~~~---------~~~i~~~~~-~g~~~~~~~~~-~~~~~~i~~~~~g~l~~v~~~~-------~gl~~~~-~~g   80 (243)
                      ++.||+...         ...+.++|+ +.+++...... .+...+++. -++++ |+....       ..++++| .+.
T Consensus        98 ~~~lyv~GG~~~~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~-~~~~i-yv~GG~~~~~~~~~~~~~yd~~~~  175 (315)
T 4asc_A           98 LNSIYVVGGREIKDGERCLDSVMCYDRLSFKWGESDPLPYVVYGHTVLS-HMDLV-YVIGGKGSDRKCLNKMCVYDPKKF  175 (315)
T ss_dssp             TTEEEEECCEESSTTCCBCCCEEEEETTTTEEEECCCCSSCCBSCEEEE-ETTEE-EEECCBCTTSCBCCCEEEEETTTT
T ss_pred             CCEEEEEeCCcCCCCCcccceEEEECCCCCcEeECCCCCCcccceeEEE-ECCEE-EEEeCCCCCCcccceEEEEeCCCC
Confidence            567776531         134788884 45565543211 111102333 45666 766532       2488898 555


Q ss_pred             -cEEEEeccCCCcccCCccEEEcCCCcEEEEeCCCCCCcccccccccccCCCceEEEEeCCCCeeEEeeccc--cccceE
Q 026118           81 -VTVLVSQFNGSQLRFANDVIEASDGSLYFTVSSTKFTPAEYYLDLVSGEPHGVLLKYDPSTNQTSLVLDGL--YFANGV  157 (243)
Q Consensus        81 -~~~~~~~~~~~~~~~~~~l~~d~~G~l~v~~~~~~~~~~~~~~~~~~~~~~g~v~~~~~~~~~~~~~~~~~--~~~~gi  157 (243)
                       .+.+...+.   ...-.+++ .-++++|+..-.            ........+++||+++.+++.+..-.  ....++
T Consensus       176 ~W~~~~~~p~---~r~~~~~~-~~~~~iyv~GG~------------~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~  239 (315)
T 4asc_A          176 EWKELAPMQT---ARSLFGAT-VHDGRIIVAAGV------------TDTGLTSSAEVYSITDNKWAPFEAFPQERSSLSL  239 (315)
T ss_dssp             EEEECCCCSS---CCBSCEEE-EETTEEEEEEEE------------CSSSEEEEEEEEETTTTEEEEECCCSSCCBSCEE
T ss_pred             eEEECCCCCC---chhceEEE-EECCEEEEEecc------------CCCCccceEEEEECCCCeEEECCCCCCcccceeE
Confidence             444332111   11222322 236788875210            00012246999999988888764311  111233


Q ss_pred             EEcCCCCEEEEEE
Q 026118          158 ALSEDERFLVVCE  170 (243)
Q Consensus       158 ~~~~dg~~l~v~~  170 (243)
                      +.. +++ ||+..
T Consensus       240 ~~~-~~~-l~v~G  250 (315)
T 4asc_A          240 VSL-VGT-LYAIG  250 (315)
T ss_dssp             EEE-TTE-EEEEE
T ss_pred             EEE-CCE-EEEEC
Confidence            332 454 77753

>3ii7_A Kelch-like protein 7; protein-binding, kelch-repeat, structural genomics, structur genomics consortium, SGC, kelch repeat, nucleus, protein BI; 1.63A {Homo sapiens}

Probab=81.09  E-value=17  Score=27.96  Aligned_cols=149  Identities=13%  Similarity=0.118  Sum_probs=73.8

Q ss_pred             CCCcEEEEe-C----CCcEEEEcc-CCceeEecccC-CccccceEEccCCCEEEEEeCC-------CcEEEEe-cCC-cE
Q 026118           19 GNGVLYTAT-G----DGWIKRMHP-NGTWEDWHQVG-SQSLLGLTTTKENNVIIVCDSQ-------QGLLKVS-EEG-VT   82 (243)
Q Consensus        19 ~~g~l~~~~-~----~~~i~~~~~-~g~~~~~~~~~-~~~~~~i~~~~~g~l~~v~~~~-------~gl~~~~-~~g-~~   82 (243)
                      -++.||+.. .    ...+.++|+ .+++....... .+...+++. -++++ |+....       ..++++| .+. .+
T Consensus        54 ~~~~lyv~GG~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~-~~~~i-yv~GG~~~~~~~~~~~~~~d~~~~~W~  131 (306)
T 3ii7_A           54 WDNVVYILGGSQLFPIKRMDCYNVVKDSWYSKLGPPTPRDSLAACA-AEGKI-YTSGGSEVGNSALYLFECYDTRTESWH  131 (306)
T ss_dssp             ETTEEEEECCBSSSBCCEEEEEETTTTEEEEEECCSSCCBSCEEEE-ETTEE-EEECCBBTTBSCCCCEEEEETTTTEEE
T ss_pred             ECCEEEEEeCCCCCCcceEEEEeCCCCeEEECCCCCccccceeEEE-ECCEE-EEECCCCCCCcEeeeEEEEeCCCCceE
Confidence            356777653 1    245788884 55665543221 111102222 35666 766432       2388888 555 55


Q ss_pred             EEEeccCCCcccCCccEEEcCCCcEEEEeCCCCCCcccccccccccCCCceEEEEeCCCCeeEEeeccc--cccceEEEc
Q 026118           83 VLVSQFNGSQLRFANDVIEASDGSLYFTVSSTKFTPAEYYLDLVSGEPHGVLLKYDPSTNQTSLVLDGL--YFANGVALS  160 (243)
Q Consensus        83 ~~~~~~~~~~~~~~~~l~~d~~G~l~v~~~~~~~~~~~~~~~~~~~~~~g~v~~~~~~~~~~~~~~~~~--~~~~gi~~~  160 (243)
                      .+...+..   ..-..++ .-++.+|+..-...        ..........+++||+.+.+++.+..-.  ....+++..
T Consensus       132 ~~~~~p~~---r~~~~~~-~~~~~iyv~GG~~~--------~~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~~  199 (306)
T 3ii7_A          132 TKPSMLTQ---RCSHGMV-EANGLIYVCGGSLG--------NNVSGRVLNSCEVYDPATETWTELCPMIEARKNHGLVFV  199 (306)
T ss_dssp             EECCCSSC---CBSCEEE-EETTEEEEECCEES--------CTTTCEECCCEEEEETTTTEEEEECCCSSCCBSCEEEEE
T ss_pred             eCCCCcCC---cceeEEE-EECCEEEEECCCCC--------CCCcccccceEEEeCCCCCeEEECCCccchhhcceEEEE
Confidence            44322111   1222222 34678888631100        0000001356999999998888764211  112234433


Q ss_pred             CCCCEEEEEEcC-----CCeEEEEEeec
Q 026118          161 EDERFLVVCESW-----KFRCVKHFLKV  183 (243)
Q Consensus       161 ~dg~~l~v~~~~-----~~~i~~~~~~~  183 (243)
                       +++ ||+..-.     .+.+++||+..
T Consensus       200 -~~~-i~v~GG~~~~~~~~~~~~yd~~~  225 (306)
T 3ii7_A          200 -KDK-IFAVGGQNGLGGLDNVEYYDIKL  225 (306)
T ss_dssp             -TTE-EEEECCEETTEEBCCEEEEETTT
T ss_pred             -CCE-EEEEeCCCCCCCCceEEEeeCCC
Confidence             455 8876321     25688888764

>2hz6_A Endoplasmic reticulum to nucleus signalling 1 isoform 1 variant; triangular beta-sheet cluster, signaling protein; 3.10A {Homo sapiens}

Probab=80.12  E-value=3.1  Score=33.59  Aligned_cols=50  Identities=14%  Similarity=-0.076  Sum_probs=26.3

Q ss_pred             ceEEEEeCCCCeeEEeeccccccceEEEcCCCCEEEEEEcCCCeEEEEEeec
Q 026118          132 GVLLKYDPSTNQTSLVLDGLYFANGVALSEDERFLVVCESWKFRCVKHFLKV  183 (243)
Q Consensus       132 g~v~~~~~~~~~~~~~~~~~~~~~gi~~~~dg~~l~v~~~~~~~i~~~~~~~  183 (243)
                      +.|+.+|.++|+...-... .......+..+++ +|++...++.|+.+|..+
T Consensus        19 g~v~a~d~~tG~~~W~~~~-~~~~s~p~~~~g~-~~v~~s~dg~l~a~d~~t   68 (369)
T 2hz6_A           19 GSLHAVSKRTGSIKWTLKE-DPVLQVPTHVEEP-AFLPDPNDGSLYTLGSKN   68 (369)
T ss_dssp             SEEEEEETTTCCEEEEEEC-CCSCCCC-----C-CEEECTTTCCEEEC----
T ss_pred             CEEEEEECCCCCEEEEecC-CCceecceEcCCC-EEEEeCCCCEEEEEECCC
Confidence            5899999988877643322 2222222334666 666656678899988754

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	243
d1v04a_	340	b.68.6.2 (A:) Serum paraoxonase/arylesterase 1, PO	2e-24
d2p4oa1	302	b.68.6.3 (A:4-305) Hypothetical protein All0351 ho	5e-06

>d1v04a_ b.68.6.2 (A:) Serum paraoxonase/arylesterase 1, PON1 {Rabit (Oryctolagus cuniculus) [TaxId: 9986]} Length = 340

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: Serum paraoxonase/arylesterase 1, PON1
domain: Serum paraoxonase/arylesterase 1, PON1
species: Rabit (Oryctolagus cuniculus) [TaxId: 9986]

 Score = 97.1 bits (241), Expect = 2e-24
 Identities = 38/260 (14%), Positives = 82/260 (31%), Gaps = 36/260 (13%)

Query: 6   EGIVNHPEDVSVDGNGVLYTATGDGWIKRM----------------HPNGTWEDWHQVGS 49
           +GI N  ED+ +  NG+ + ++G  +   M                       +   +G+
Sbjct: 31  KGIDNGSEDLEILPNGLAFISSGLKYPGIMSFDPDKSGKILLMDLNEKEPAVSELEIIGN 90

Query: 50  Q------SLLGLTTTKEN---------NVIIVCDSQQGLLKVSEEGVTVLVSQFNGSQLR 94
                  +  G++T  ++         N      + +      EE   + +       L 
Sbjct: 91  TLDISSFNPHGISTFIDDDNTVYLLVVNHPGSSSTVEVFKFQEEEKSLLHLKTIRHKLLP 150

Query: 95  FANDVIEASDGSLYFTVSSTKFTPAEYYLDLVSGEPHGVLLKYDPSTNQTSLVLDGLYFA 154
             ND++       Y T       P     ++  G     +  Y P+     +V +G  FA
Sbjct: 151 SVNDIVAVGPEHFYATNDHYFIDPYLKSWEMHLGLAWSFVTYYSPNDV--RVVAEGFDFA 208

Query: 155 NGVALSEDERFLVVCESWKFRCVKHFLKVSGRTDREIFIDNLPGGPDNVNLARDGSFWIS 214
           NG+ +S D +++ + E    +   +    +        +       DN+++         
Sbjct: 209 NGINISPDGKYVYIAELLAHKIHVYEKHANWTLTPLRVLS-FDTLVDNISVDPVTGDL-- 265

Query: 215 IIKMDPKGIQALQSCKERKQ 234
            +   P G++      E   
Sbjct: 266 WVGCHPNGMRIFFYDAENPP 285

>d2p4oa1 b.68.6.3 (A:4-305) Hypothetical protein All0351 homologue {Nostoc punctiforme [TaxId: 272131]} Length = 302

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: All0351-like
domain: Hypothetical protein All0351 homologue
species: Nostoc punctiforme [TaxId: 272131]

 Score = 44.3 bits (103), Expect = 5e-06
 Identities = 30/205 (14%), Positives = 55/205 (26%), Gaps = 12/205 (5%)

Query: 12  PEDVSVDGNGVLY-TATGDGWIKRMHPNGTWEDWHQVGSQSLLGLTTTKENNVIIVCDSQ 70
            E+++   +G ++ T    G I  + P+G  +    V  +   GL  T   +++    + 
Sbjct: 30  LENLASAPDGTIFVTNHEVGEIVSITPDGNQQIHATVEGKVS-GLAFTSNGDLVATGWNA 88

Query: 71  QGLLKVSEEGVTVLVSQF-NGSQLRFANDVIEASDGSLYFTVSSTKFTPAEYYLDLVSGE 129
             +  VS       V          F N +   SD       S                +
Sbjct: 89  DSIPVVSLVKSDGTVETLLTLPDAIFLNGITPLSDTQYLTADSYRGAIWLI--------D 140

Query: 130 PHGVLLKYDPSTNQTSLVLDGLYFANGVALSEDERFLVVCESWKFRCVKHFLKVSGRTDR 189
                          +       F     L     FL V  + K   +      S     
Sbjct: 141 VVQPSGSIWLEHPMLARSNSESVFPAANGLKRFGNFLYVSNTEKML-LLRIPVDSTDKPG 199

Query: 190 EIFIDNLPGGPDNVNLARDGSFWIS 214
           E  I       D+     +G+ + +
Sbjct: 200 EPEIFVEQTNIDDFAFDVEGNLYGA 224

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	243
d1pjxa_	314	Diisopropylfluorophosphatase (phosphotriesterase,	99.95
d2dg1a1	319	Lactonase Drp35 {Staphylococcus aureus [TaxId: 128	99.93
d2ghsa1	295	Regucalcin {Agrobacterium tumefaciens [TaxId: 358]	99.92
d1rwia_	260	Serine/threonine-protein kinase PknD {Mycobacteriu	99.84
d2p4oa1	302	Hypothetical protein All0351 homologue {Nostoc pun	99.84
d1rwia_	260	Serine/threonine-protein kinase PknD {Mycobacteriu	99.83
d1q7fa_	279	Brain tumor cg10719-pa {Fruit fly (Drosophila mela	99.78
d1v04a_	340	Serum paraoxonase/arylesterase 1, PON1 {Rabit (Ory	99.78
d1pjxa_	314	Diisopropylfluorophosphatase (phosphotriesterase,	99.74
d1npea_	263	Nidogen {Mouse (Mus musculus) [TaxId: 10090]}	99.61
d1ijqa1	266	Low density lipoprotein (LDL) receptor {Human (Hom	99.59
d1npea_	263	Nidogen {Mouse (Mus musculus) [TaxId: 10090]}	99.57
d2dg1a1	319	Lactonase Drp35 {Staphylococcus aureus [TaxId: 128	99.56
d1q7fa_	279	Brain tumor cg10719-pa {Fruit fly (Drosophila mela	99.54
d2p4oa1	302	Hypothetical protein All0351 homologue {Nostoc pun	99.49
d2ghsa1	295	Regucalcin {Agrobacterium tumefaciens [TaxId: 358]	99.41
d1ijqa1	266	Low density lipoprotein (LDL) receptor {Human (Hom	99.39
d1jofa_	365	3-carboxy-cis,cis-mucoante lactonizing enzyme {Neu	99.19
d1l0qa2	301	Surface layer protein {Archaeon Methanosarcina maz	99.18
d1l0qa2	301	Surface layer protein {Archaeon Methanosarcina maz	99.17
d1qksa2	432	C-terminal (heme d1) domain of cytochrome cd1-nitr	99.17
d1ri6a_	333	Putative isomerase YbhE {Escherichia coli [TaxId:	99.15
d1crua_	450	Soluble quinoprotein glucose dehydrogenase {Acinet	99.15
d1jofa_	365	3-carboxy-cis,cis-mucoante lactonizing enzyme {Neu	99.11
d1ri6a_	333	Putative isomerase YbhE {Escherichia coli [TaxId:	99.07
d1hzua2	426	C-terminal (heme d1) domain of cytochrome cd1-nitr	98.95
d1nr0a1	311	Actin interacting protein 1 {Nematode (Caenorhabdi	98.9
d1qksa2	432	C-terminal (heme d1) domain of cytochrome cd1-nitr	98.82
d1k32a3	360	Tricorn protease domain 2 {Archaeon Thermoplasma a	98.74
d1jmxb_	346	Quinohemoprotein amine dehydrogenase B chain {Pseu	98.73
d1pbyb_	337	Quinohemoprotein amine dehydrogenase B chain {Para	98.72
d1gxra_	337	Groucho/tle1, C-terminal domain {Human (Homo sapie	98.71
d1qnia2	441	Nitrous oxide reductase, N-terminal domain {Pseudo	98.67
d1nr0a2	299	Actin interacting protein 1 {Nematode (Caenorhabdi	98.64
d1gxra_	337	Groucho/tle1, C-terminal domain {Human (Homo sapie	98.64
d1k8kc_	371	Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taur	98.62
d1nr0a2	299	Actin interacting protein 1 {Nematode (Caenorhabdi	98.58
d1k8kc_	371	Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taur	98.52
d1jmxb_	346	Quinohemoprotein amine dehydrogenase B chain {Pseu	98.51
d2madh_	373	Methylamine dehydrogenase, H-chain {Gram negative	98.49
d1k32a3	360	Tricorn protease domain 2 {Archaeon Thermoplasma a	98.47
d1mdah_	368	Methylamine dehydrogenase, H-chain {Paracoccus den	98.46
d2bbkh_	355	Methylamine dehydrogenase, H-chain {Paracoccus den	98.45
d1tbga_	340	beta1-subunit of the signal-transducing G protein	98.42
d1nr0a1	311	Actin interacting protein 1 {Nematode (Caenorhabdi	98.41
d2madh_	373	Methylamine dehydrogenase, H-chain {Gram negative	98.37
d1hzua2	426	C-terminal (heme d1) domain of cytochrome cd1-nitr	98.37
d1qnia2	441	Nitrous oxide reductase, N-terminal domain {Pseudo	98.34
d1pbyb_	337	Quinohemoprotein amine dehydrogenase B chain {Para	98.31
d1erja_	388	Tup1, C-terminal domain {Baker's yeast (Saccharomy	98.19
d1crua_	450	Soluble quinoprotein glucose dehydrogenase {Acinet	98.16
d1tbga_	340	beta1-subunit of the signal-transducing G protein	98.13
d1mdah_	368	Methylamine dehydrogenase, H-chain {Paracoccus den	98.1
d1pgua2	287	Actin interacting protein 1 {Baker's yeast (Saccha	98.04
d2bbkh_	355	Methylamine dehydrogenase, H-chain {Paracoccus den	97.89
d1erja_	388	Tup1, C-terminal domain {Baker's yeast (Saccharomy	97.85
d1fwxa2	459	Nitrous oxide reductase, N-terminal domain {Paraco	97.84
d1pgua1	325	Actin interacting protein 1 {Baker's yeast (Saccha	97.82
d1vyhc1	317	Platelet-activating factor acetylhydrolase IB subu	97.69
d1v04a_	340	Serum paraoxonase/arylesterase 1, PON1 {Rabit (Ory	97.63
d1tl2a_	235	Tachylectin-2 {Japanese horseshoe crab (Tachypleus	97.62
d1pgua1	325	Actin interacting protein 1 {Baker's yeast (Saccha	97.57
d1vyhc1	317	Platelet-activating factor acetylhydrolase IB subu	97.54
d1sq9a_	393	Antiviral protein Ski8 (Ski8p) {Baker's yeast (Sac	97.43
d1sq9a_	393	Antiviral protein Ski8 (Ski8p) {Baker's yeast (Sac	97.24
d1h6la_	353	Thermostable phytase (3-phytase) {Bacillus amyloli	97.16
d1fwxa2	459	Nitrous oxide reductase, N-terminal domain {Paraco	97.13
d2ovrb2	342	F-box/WD repeat-containing protein 7, FBXW7 {Human	97.08
d2hqsa1	269	TolB, C-terminal domain {Escherichia coli [TaxId:	96.99
d1k32a2	281	Tricorn protease N-terminal domain {Archaeon Therm	96.97
d2bgra1	470	Dipeptidyl peptidase IV/CD26, N-terminal domain {P	96.75
d1nexb2	355	Cdc4 propeller domain {Baker's yeast (Saccharomyce	96.51
d1pgua2	287	Actin interacting protein 1 {Baker's yeast (Saccha	96.47
d2bgra1	470	Dipeptidyl peptidase IV/CD26, N-terminal domain {P	96.46
d1tl2a_	235	Tachylectin-2 {Japanese horseshoe crab (Tachypleus	96.46
d2ad6a1	571	Methanol dehydrogenase, heavy chain {Methylophilus	96.42
d1kv9a2	560	Quinoprotein alcohol dehydrogenase, N-terminal dom	96.38
d1k32a2	281	Tricorn protease N-terminal domain {Archaeon Therm	96.23
d1nexb2	355	Cdc4 propeller domain {Baker's yeast (Saccharomyce	95.97
d1w6sa_	596	Methanol dehydrogenase, heavy chain {Methylobacter	95.87
d1kb0a2	573	Quinoprotein alcohol dehydrogenase, N-terminal dom	95.7
d2ovrb2	342	F-box/WD repeat-containing protein 7, FBXW7 {Human	95.46
d1xfda1	465	Dipeptidyl aminopeptidase-like protein 6, DPP6, N-	95.35
d2ebsa1	427	Oligoxyloglucan reducing end-specific cellobiohydr	95.28
d1xfda1	465	Dipeptidyl aminopeptidase-like protein 6, DPP6, N-	94.86
d1yfqa_	342	Cell cycle arrest protein BUB3 {Baker's yeast (Sac	94.63
d1yfqa_	342	Cell cycle arrest protein BUB3 {Baker's yeast (Sac	91.8
d1k3ia3	387	Galactose oxidase, central domain {Fungi (Fusarium	91.77
d1h6la_	353	Thermostable phytase (3-phytase) {Bacillus amyloli	91.37
d1flga_	582	Ethanol dehydrogenase {Pseudomonas aeruginosa [Tax	91.33
d2hqsa1	269	TolB, C-terminal domain {Escherichia coli [TaxId:	91.23
d1k3ia3	387	Galactose oxidase, central domain {Fungi (Fusarium	88.8
d1flga_	582	Ethanol dehydrogenase {Pseudomonas aeruginosa [Tax	85.43
d1kb0a2	573	Quinoprotein alcohol dehydrogenase, N-terminal dom	84.97
d2ebsa2	356	Oligoxyloglucan reducing end-specific cellobiohydr	84.06
d1kv9a2	560	Quinoprotein alcohol dehydrogenase, N-terminal dom	83.76
d2ebsa1	427	Oligoxyloglucan reducing end-specific cellobiohydr	83.47
d2ad6a1	571	Methanol dehydrogenase, heavy chain {Methylophilus	82.09
d1qfma1	430	Prolyl oligopeptidase, N-terminal domain {Pig (Sus	80.69

>d1pjxa_ b.68.6.1 (A:) Diisopropylfluorophosphatase (phosphotriesterase, DFP) {Squid (Loligo vulgaris) [TaxId: 6622]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: SGL-like
domain: Diisopropylfluorophosphatase (phosphotriesterase, DFP)
species: Squid (Loligo vulgaris) [TaxId: 6622]

Probab=99.95  E-value=6.2e-26  Score=182.21  Aligned_cols=213  Identities=21%  Similarity=0.309  Sum_probs=157.5

Q ss_pred             ceecccccCCcccEEEcCCCcEEEEeC--------CCcEEEEccC-CceeEeccc-----CCccccceEEccCCCEEEEE
Q 026118            2 IKLGEGIVNHPEDVSVDGNGVLYTATG--------DGWIKRMHPN-GTWEDWHQV-----GSQSLLGLTTTKENNVIIVC   67 (243)
Q Consensus         2 ~~~~~g~~~~p~~i~~d~~g~l~~~~~--------~~~i~~~~~~-g~~~~~~~~-----~~~~~~~i~~~~~g~l~~v~   67 (243)
                      +++.++ +..||++++|++|+||+++.        +++|+++++. +....+...     ...|. +|+++++|+++|++
T Consensus        11 ~~v~~~-~~g~EGpa~d~dG~ly~~~~~~~~~~~~~g~I~r~d~~~~~~~~~~~~~~~~~~g~P~-Gl~~~~dg~~l~va   88 (314)
T d1pjxa_          11 TKVTED-IPGAEGPVFDKNGDFYIVAPEVEVNGKPAGEILRIDLKTGKKTVICKPEVNGYGGIPA-GCQCDRDANQLFVA   88 (314)
T ss_dssp             EEEECC-CTTCEEEEECTTSCEEEEETTCEETTEECCEEEEECTTTCCEEEEECCEETTEECCEE-EEEECSSSSEEEEE
T ss_pred             EEeecC-CCCCeEeEEeCCCCEEEEECccccccccCCEEEEEECCCCcEEEEECCccccCCCcce-eEEEeCCCCEEEEE
Confidence            466776 99999999999999998762        4679999954 444443321     23577 99999999876999


Q ss_pred             eCCCcEEEEecCC-cEEE-EeccCCCcccCCccEEEcCCCcEEEEeCCCCCCcccccccccccCCCceEEEEeCCCCeeE
Q 026118           68 DSQQGLLKVSEEG-VTVL-VSQFNGSQLRFANDVIEASDGSLYFTVSSTKFTPAEYYLDLVSGEPHGVLLKYDPSTNQTS  145 (243)
Q Consensus        68 ~~~~gl~~~~~~g-~~~~-~~~~~~~~~~~~~~l~~d~~G~l~v~~~~~~~~~~~~~~~~~~~~~~g~v~~~~~~~~~~~  145 (243)
                      +...++++++.++ ...+ .....+.+.+.|+++++|++|++||+++........  .........+.||+++++ ++..
T Consensus        89 d~~~~i~~~~~~g~~~~~~~~~~~g~~~~~pndl~~d~~G~lyvtd~~~~~~~~~--~~~~~~~~~G~v~~~~~d-g~~~  165 (314)
T d1pjxa_          89 DMRLGLLVVQTDGTFEEIAKKDSEGRRMQGCNDCAFDYEGNLWITAPAGEVAPAD--YTRSMQEKFGSIYCFTTD-GQMI  165 (314)
T ss_dssp             ETTTEEEEEETTSCEEECCSBCTTSCBCBCCCEEEECTTSCEEEEECBCBCTTSC--CCBTTSSSCEEEEEECTT-SCEE
T ss_pred             ECCCeEEEEeCCCcEEEEEeccccccccCCCcEEEECCCCCEEEecCccCccccc--ccceeccCCceEEEEeec-Ccee
Confidence            8878899999655 4333 334455566789999999999999998764332211  111122356789999998 6777


Q ss_pred             EeeccccccceEEEcCCCC----EEEEEEcCCCeEEEEEeecC-CCcceEEecc---CCCCCCCceEECCCCCEEEEEec
Q 026118          146 LVLDGLYFANGVALSEDER----FLVVCESWKFRCVKHFLKVS-GRTDREIFID---NLPGGPDNVNLARDGSFWISIIK  217 (243)
Q Consensus       146 ~~~~~~~~~~gi~~~~dg~----~l~v~~~~~~~i~~~~~~~~-~~~~~~~~~~---~~~~~~~~i~~d~~G~lwv~~~~  217 (243)
                      .+......||||+++++++    +||+++..++.|++|+++.. .+...+.+..   ...+.|+||++|++|+|||+.+.
T Consensus       166 ~~~~~~~~pNGi~~~~d~d~~~~~lyv~d~~~~~i~~~d~~~~g~~~~~~~~~~~~~~~~~~pdGiavD~~GnlyVa~~~  245 (314)
T d1pjxa_         166 QVDTAFQFPNGIAVRHMNDGRPYQLIVAETPTKKLWSYDIKGPAKIENKKVWGHIPGTHEGGADGMDFDEDNNLLVANWG  245 (314)
T ss_dssp             EEEEEESSEEEEEEEECTTSCEEEEEEEETTTTEEEEEEEEETTEEEEEEEEEECCCCSSCEEEEEEEBTTCCEEEEEET
T ss_pred             EeeCCcceeeeeEECCCCCcceeEEEEEeecccceEEeeccCccccceeeEEEEccccccccceeeEEecCCcEEEEEcC
Confidence            7777788899999998775    79999999999999998743 3444444432   22346999999999999999886


Q ss_pred             CC
Q 026118          218 MD  219 (243)
Q Consensus       218 ~~  219 (243)
                      .+
T Consensus       246 ~g  247 (314)
T d1pjxa_         246 SS  247 (314)
T ss_dssp             TT
T ss_pred             CC
Confidence            54

>d2dg1a1 b.68.6.1 (A:6-324) Lactonase Drp35 {Staphylococcus aureus [TaxId: 1280]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: SGL-like
domain: Lactonase Drp35
species: Staphylococcus aureus [TaxId: 1280]

Probab=99.93  E-value=2.7e-24  Score=172.92  Aligned_cols=193  Identities=22%  Similarity=0.348  Sum_probs=143.7

Q ss_pred             cccEEEcCCCcEEEEe-CCCcEEEEccCCc-eeE-ecccCCccccceEEccCCCEEEEEeCC-----CcEEEEec-CC-c
Q 026118           12 PEDVSVDGNGVLYTAT-GDGWIKRMHPNGT-WED-WHQVGSQSLLGLTTTKENNVIIVCDSQ-----QGLLKVSE-EG-V   81 (243)
Q Consensus        12 p~~i~~d~~g~l~~~~-~~~~i~~~~~~g~-~~~-~~~~~~~~~~~i~~~~~g~l~~v~~~~-----~gl~~~~~-~g-~   81 (243)
                      +|++++|++|+||+++ .+++|+++++++. ... +......|. +|+++++|++ |++...     .+++.++. .+ .
T Consensus        42 lEG~~~D~~G~Ly~~D~~~g~I~ri~p~g~~~~~~~~~~~~~p~-gla~~~dG~l-~va~~~~~~~~~~i~~~~~~~~~~  119 (319)
T d2dg1a1          42 LEGLNFDRQGQLFLLDVFEGNIFKINPETKEIKRPFVSHKANPA-AIKIHKDGRL-FVCYLGDFKSTGGIFAATENGDNL  119 (319)
T ss_dssp             EEEEEECTTSCEEEEETTTCEEEEECTTTCCEEEEEECSSSSEE-EEEECTTSCE-EEEECTTSSSCCEEEEECTTSCSC
T ss_pred             cEeCEECCCCCEEEEECCCCEEEEEECCCCeEEEEEeCCCCCee-EEEECCCCCE-EEEecCCCccceeEEEEcCCCcee
Confidence            4899999999999998 7889999997664 332 333345688 9999999999 888642     34777773 33 4


Q ss_pred             EEEEeccCCCcccCCccEEEcCCCcEEEEeCCCCCCcccccccccccCCCceEEEEeCCCCeeEEeeccccccceEEEcC
Q 026118           82 TVLVSQFNGSQLRFANDVIEASDGSLYFTVSSTKFTPAEYYLDLVSGEPHGVLLKYDPSTNQTSLVLDGLYFANGVALSE  161 (243)
Q Consensus        82 ~~~~~~~~~~~~~~~~~l~~d~~G~l~v~~~~~~~~~~~~~~~~~~~~~~g~v~~~~~~~~~~~~~~~~~~~~~gi~~~~  161 (243)
                      ..+....  .....+++++++++|++|+++....           .....+.+++++++++.++.+......|+||++++
T Consensus       120 ~~~~~~~--~~~~~~nd~~~d~~G~l~vtd~~~~-----------~~~~~g~v~~~~~dg~~~~~~~~~~~~pnGia~s~  186 (319)
T d2dg1a1         120 QDIIEDL--STAYCIDDMVFDSKGGFYFTDFRGY-----------STNPLGGVYYVSPDFRTVTPIIQNISVANGIALST  186 (319)
T ss_dssp             EEEECSS--SSCCCEEEEEECTTSCEEEEECCCB-----------TTBCCEEEEEECTTSCCEEEEEEEESSEEEEEECT
T ss_pred             eeeccCC--CcccCCcceeEEeccceeecccccc-----------cccCcceeEEEecccceeEEEeeccceeeeeeecc
Confidence            4443321  2245688999999999999986521           11235689999999777787777888999999999


Q ss_pred             CCCEEEEEEcCCCeEEEEEeecCCCc-ce---E-EeccCCCCCCCceEECCCCCEEEEEecCC
Q 026118          162 DERFLVVCESWKFRCVKHFLKVSGRT-DR---E-IFIDNLPGGPDNVNLARDGSFWISIIKMD  219 (243)
Q Consensus       162 dg~~l~v~~~~~~~i~~~~~~~~~~~-~~---~-~~~~~~~~~~~~i~~d~~G~lwv~~~~~~  219 (243)
                      |+++||+++...++|++|+++.+... ..   . .........|+||++|++|+|||+.+.++
T Consensus       187 dg~~lyvad~~~~~I~~~d~~~~g~~~~~~~~~~~~~~~~~~~PdGl~vD~~G~l~Va~~~~g  249 (319)
T d2dg1a1         187 DEKVLWVTETTANRLHRIALEDDGVTIQPFGATIPYYFTGHEGPDSCCIDSDDNLYVAMYGQG  249 (319)
T ss_dssp             TSSEEEEEEGGGTEEEEEEECTTSSSEEEEEEEEEEECCSSSEEEEEEEBTTCCEEEEEETTT
T ss_pred             ccceEEEecccCCceEEEEEcCCCceeccccceeeeccCCccceeeeeEcCCCCEEEEEcCCC
Confidence            99999999999999999998754221 11   1 11112234699999999999999998765

>d2ghsa1 b.68.6.1 (A:20-314) Regucalcin {Agrobacterium tumefaciens [TaxId: 358]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: SGL-like
domain: Regucalcin
species: Agrobacterium tumefaciens [TaxId: 358]

Probab=99.92  E-value=1.3e-23  Score=167.16  Aligned_cols=190  Identities=15%  Similarity=0.199  Sum_probs=142.9

Q ss_pred             ccEEEcC-CCcEEEEe-CCCcEEEEcc-CCceeEecccCCccccceEEccCCCEEEEEeCCCcEEEEe-cCC-cEEEEec
Q 026118           13 EDVSVDG-NGVLYTAT-GDGWIKRMHP-NGTWEDWHQVGSQSLLGLTTTKENNVIIVCDSQQGLLKVS-EEG-VTVLVSQ   87 (243)
Q Consensus        13 ~~i~~d~-~g~l~~~~-~~~~i~~~~~-~g~~~~~~~~~~~~~~~i~~~~~g~l~~v~~~~~gl~~~~-~~g-~~~~~~~   87 (243)
                      |+..+|+ +|.||+.+ .+++|+++++ +++...+.. ...+. +++++++|++ |++. ..|++++| .++ .+.+...
T Consensus        21 Egp~wd~~~~~l~wvDi~~~~I~r~d~~~g~~~~~~~-~~~~~-~i~~~~dg~l-~va~-~~gl~~~d~~tg~~~~l~~~   96 (295)
T d2ghsa1          21 EGPTFDPASGTAWWFNILERELHELHLASGRKTVHAL-PFMGS-ALAKISDSKQ-LIAS-DDGLFLRDTATGVLTLHAEL   96 (295)
T ss_dssp             EEEEEETTTTEEEEEEGGGTEEEEEETTTTEEEEEEC-SSCEE-EEEEEETTEE-EEEE-TTEEEEEETTTCCEEEEECS
T ss_pred             eCCeEECCCCEEEEEECCCCEEEEEECCCCeEEEEEC-CCCcE-EEEEecCCCE-EEEE-eCccEEeecccceeeEEeee
Confidence            4555563 78899888 7889999995 455555543 34455 8999999998 8887 47999999 667 6666654


Q ss_pred             cCCCcccCCccEEEcCCCcEEEEeCCCCCCcccccccccccCCCceEEEEeCCCCeeEEeeccccccceEEEcCCCCEEE
Q 026118           88 FNGSQLRFANDVIEASDGSLYFTVSSTKFTPAEYYLDLVSGEPHGVLLKYDPSTNQTSLVLDGLYFANGVALSEDERFLV  167 (243)
Q Consensus        88 ~~~~~~~~~~~l~~d~~G~l~v~~~~~~~~~~~~~~~~~~~~~~g~v~~~~~~~~~~~~~~~~~~~~~gi~~~~dg~~l~  167 (243)
                      ....+.+.++++.+|++|++|++++...           .....+.+|++..  +++..+......++|++++++++.+|
T Consensus        97 ~~~~~~~~~nd~~vd~~G~iw~~~~~~~-----------~~~~~g~l~~~~~--g~~~~~~~~~~~~Ng~~~s~d~~~l~  163 (295)
T d2ghsa1          97 ESDLPGNRSNDGRMHPSGALWIGTMGRK-----------AETGAGSIYHVAK--GKVTKLFADISIPNSICFSPDGTTGY  163 (295)
T ss_dssp             STTCTTEEEEEEEECTTSCEEEEEEETT-----------CCTTCEEEEEEET--TEEEEEEEEESSEEEEEECTTSCEEE
T ss_pred             ecCCCcccceeeEECCCCCEEEEecccc-----------ccccceeEeeecC--CcEEEEeeccCCcceeeecCCCceEE
Confidence            4444556789999999999999975311           1123457888764  67777777788999999999999999


Q ss_pred             EEEcCCCeEEEEEeecCC---CcceEEec--cCCCCCCCceEECCCCCEEEEEecCC
Q 026118          168 VCESWKFRCVKHFLKVSG---RTDREIFI--DNLPGGPDNVNLARDGSFWISIIKMD  219 (243)
Q Consensus       168 v~~~~~~~i~~~~~~~~~---~~~~~~~~--~~~~~~~~~i~~d~~G~lwv~~~~~~  219 (243)
                      ++++..+.|++|+++...   ......+.  ....+.|+++++|++|+||++.+.++
T Consensus       164 ~~dt~~~~I~~~~~d~~~~~~~~~~~~~~~~~~~~g~pdG~~vD~~GnlWva~~~~g  220 (295)
T d2ghsa1         164 FVDTKVNRLMRVPLDARTGLPTGKAEVFIDSTGIKGGMDGSVCDAEGHIWNARWGEG  220 (295)
T ss_dssp             EEETTTCEEEEEEBCTTTCCBSSCCEEEEECTTSSSEEEEEEECTTSCEEEEEETTT
T ss_pred             EeecccceeeEeeecccccccccceEEEeccCcccccccceEEcCCCCEEeeeeCCC
Confidence            999999999999987431   12233332  23556899999999999999998765

>d1rwia_ b.68.9.1 (A:) Serine/threonine-protein kinase PknD {Mycobacterium tuberculosis [TaxId: 1773]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: NHL repeat
family: NHL repeat
domain: Serine/threonine-protein kinase PknD
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=99.84  E-value=2.8e-19  Score=139.26  Aligned_cols=187  Identities=17%  Similarity=0.241  Sum_probs=134.4

Q ss_pred             cccCCcccEEEcCCCcEEEEeCCCcEEEEccCCceeEec--ccCCccccceEEccCCCEEEEEeCCC-cEEEEecCC-cE
Q 026118            7 GIVNHPEDVSVDGNGVLYTATGDGWIKRMHPNGTWEDWH--QVGSQSLLGLTTTKENNVIIVCDSQQ-GLLKVSEEG-VT   82 (243)
Q Consensus         7 g~~~~p~~i~~d~~g~l~~~~~~~~i~~~~~~g~~~~~~--~~~~~~~~~i~~~~~g~l~~v~~~~~-gl~~~~~~g-~~   82 (243)
                      +.+..|.+|+++++|+||+++..+.+.++...+......  .....|. +|+++++|++ |+++... .+++++..+ ..
T Consensus        54 ~~~~~p~gvav~~~g~i~v~d~~~~~i~~~~~~~~~~~~~~~~~~~p~-~iavd~~g~i-~v~d~~~~~~~~~~~~~~~~  131 (260)
T d1rwia_          54 NGLYQPQGLAVDGAGTVYVTDFNNRVVTLAAGSNNQTVLPFDGLNYPE-GLAVDTQGAV-YVADRGNNRVVKLAAGSKTQ  131 (260)
T ss_dssp             CSCCSCCCEEECTTCCEEEEETTTEEEEECTTCSCCEECCCCSCCSEE-EEEECTTCCE-EEEEGGGTEEEEECTTCSSC
T ss_pred             CCccCceEEEEcCCCCEEEeeeeeceeeeeeeccceeeeeeeeeeecc-ccccccccee-Eeecccccccccccccccee
Confidence            346789999999999999999666666665433322222  1234577 9999999999 8887543 477777444 32


Q ss_pred             EEEeccCCCcccCCccEEEcCCCcEEEEeCCCCCCcccccccccccCCCceEEEEeCCCCeeEEee-ccccccceEEEcC
Q 026118           83 VLVSQFNGSQLRFANDVIEASDGSLYFTVSSTKFTPAEYYLDLVSGEPHGVLLKYDPSTNQTSLVL-DGLYFANGVALSE  161 (243)
Q Consensus        83 ~~~~~~~~~~~~~~~~l~~d~~G~l~v~~~~~~~~~~~~~~~~~~~~~~g~v~~~~~~~~~~~~~~-~~~~~~~gi~~~~  161 (243)
                      .... .  .....|.+++++++|++|+++..                 .+.|+++++++.....+. .....|.+|++++
T Consensus       132 ~~~~-~--~~~~~p~~i~~~~~g~~~v~~~~-----------------~~~i~~~d~~~~~~~~~~~~~~~~p~gi~~d~  191 (260)
T d1rwia_         132 TVLP-F--TGLNDPDGVAVDNSGNVYVTDTD-----------------NNRVVKLEAESNNQVVLPFTDITAPWGIAVDE  191 (260)
T ss_dssp             EECC-C--CSCCSCCEEEECTTCCEEEEEGG-----------------GTEEEEECTTTCCEEECCCSSCCSEEEEEECT
T ss_pred             eeee-e--cccCCcceeeecCCCCEeeeccc-----------------cccccccccccceeeeeeccccCCCccceeee
Confidence            2221 1  22457889999999999999643                 357999999865544443 4567899999999


Q ss_pred             CCCEEEEEEcCCCeEEEEEeecCCCcceEEeccCCCCCCCceEECCCCCEEEEEecCC
Q 026118          162 DERFLVVCESWKFRCVKHFLKVSGRTDREIFIDNLPGGPDNVNLARDGSFWISIIKMD  219 (243)
Q Consensus       162 dg~~l~v~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~i~~d~~G~lwv~~~~~~  219 (243)
                      +|+ |||++..+++|++|+.++.   ....+.......|.+|++|++|+|||+++.++
T Consensus       192 ~g~-l~vsd~~~~~i~~~~~~~~---~~~~~~~~~~~~P~~i~~d~~g~l~vad~~~~  245 (260)
T d1rwia_         192 AGT-VYVTEHNTNQVVKLLAGST---TSTVLPFTGLNTPLAVAVDSDRTVYVADRGND  245 (260)
T ss_dssp             TCC-EEEEETTTTEEEEECTTCS---CCEECCCCSCCCEEEEEECTTCCEEEEEGGGT
T ss_pred             eee-eeeeecCCCEEEEEeCCCC---eEEEEccCCCCCeEEEEEeCCCCEEEEECCCC
Confidence            998 9999999999999986653   22333222234799999999999999987654

>d2p4oa1 b.68.6.3 (A:4-305) Hypothetical protein All0351 homologue {Nostoc punctiforme [TaxId: 272131]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: All0351-like
domain: Hypothetical protein All0351 homologue
species: Nostoc punctiforme [TaxId: 272131]

Probab=99.84  E-value=6.4e-19  Score=140.08  Aligned_cols=183  Identities=20%  Similarity=0.259  Sum_probs=136.8

Q ss_pred             CcccEEEcCCCcEEEEe-CCCcEEEEccCCceeEecccCCccccceEEccCCCEEEEEeCCC-cEEEEe---cCC-cEEE
Q 026118           11 HPEDVSVDGNGVLYTAT-GDGWIKRMHPNGTWEDWHQVGSQSLLGLTTTKENNVIIVCDSQQ-GLLKVS---EEG-VTVL   84 (243)
Q Consensus        11 ~p~~i~~d~~g~l~~~~-~~~~i~~~~~~g~~~~~~~~~~~~~~~i~~~~~g~l~~v~~~~~-gl~~~~---~~g-~~~~   84 (243)
                      .|++|++++||+||+++ .+++|++++++++...+......+. +++++++|++ |++.... .+..++   ..+ ...+
T Consensus        29 ~~e~iAv~pdG~l~vt~~~~~~I~~i~p~g~~~~~~~~~~~~~-gla~~~dG~l-~v~~~~~~~~~~~~~~~~~~~~~~~  106 (302)
T d2p4oa1          29 FLENLASAPDGTIFVTNHEVGEIVSITPDGNQQIHATVEGKVS-GLAFTSNGDL-VATGWNADSIPVVSLVKSDGTVETL  106 (302)
T ss_dssp             CEEEEEECTTSCEEEEETTTTEEEEECTTCCEEEEEECSSEEE-EEEECTTSCE-EEEEECTTSCEEEEEECTTSCEEEE
T ss_pred             CcCCEEECCCCCEEEEeCCCCEEEEEeCCCCEEEEEcCCCCcc-eEEEcCCCCe-EEEecCCceEEEEEecccccceeec
Confidence            48899999999999998 6889999999998877766667888 9999999998 8887543 455555   234 4444


Q ss_pred             EeccCCCcccCCccEEEcCCCcEEEEeCCCCCCcccccccccccCCCceEEEEeCCCCeeEEeec-----------cccc
Q 026118           85 VSQFNGSQLRFANDVIEASDGSLYFTVSSTKFTPAEYYLDLVSGEPHGVLLKYDPSTNQTSLVLD-----------GLYF  153 (243)
Q Consensus        85 ~~~~~~~~~~~~~~l~~d~~G~l~v~~~~~~~~~~~~~~~~~~~~~~g~v~~~~~~~~~~~~~~~-----------~~~~  153 (243)
                      .....   ...+++++++++|++|++++.                 .+.+++++++++.......           ....
T Consensus       107 ~~~~~---~~~~n~i~~~~~g~~~v~~~~-----------------~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  166 (302)
T d2p4oa1         107 LTLPD---AIFLNGITPLSDTQYLTADSY-----------------RGAIWLIDVVQPSGSIWLEHPMLARSNSESVFPA  166 (302)
T ss_dssp             EECTT---CSCEEEEEESSSSEEEEEETT-----------------TTEEEEEETTTTEEEEEEECGGGSCSSTTCCSCS
T ss_pred             cccCC---ccccceeEEccCCCEEeeccc-----------------cccceeeeccCCcceeEecCCccceeeccCcccc
Confidence            43222   346789999999999999754                 4589999998776554321           1234


Q ss_pred             cceEEEcCCCCEEEEEEcCCCeEEEEEeecC-CCcceEEeccCCCCCCCceEECCCCCEEEEEecCC
Q 026118          154 ANGVALSEDERFLVVCESWKFRCVKHFLKVS-GRTDREIFIDNLPGGPDNVNLARDGSFWISIIKMD  219 (243)
Q Consensus       154 ~~gi~~~~dg~~l~v~~~~~~~i~~~~~~~~-~~~~~~~~~~~~~~~~~~i~~d~~G~lwv~~~~~~  219 (243)
                      ++++.++  ++++|+++..++.|++++.+.. .......+.  ....|++|++|++|+||++...++
T Consensus       167 ~ngi~~~--~~~l~~~~~~~~~i~~~~~~~~~~~~~~~~~~--~~~~pdgia~d~dG~l~va~~~~~  229 (302)
T d2p4oa1         167 ANGLKRF--GNFLYVSNTEKMLLLRIPVDSTDKPGEPEIFV--EQTNIDDFAFDVEGNLYGATHIYN  229 (302)
T ss_dssp             EEEEEEE--TTEEEEEETTTTEEEEEEBCTTSCBCCCEEEE--ESCCCSSEEEBTTCCEEEECBTTC
T ss_pred             ccccccc--CCceeeecCCCCeEEecccccccccccccccc--CCCCCcceEECCCCCEEEEEcCCC
Confidence            6778765  4579999999999999998754 233333332  234699999999999999987654

>d1rwia_ b.68.9.1 (A:) Serine/threonine-protein kinase PknD {Mycobacterium tuberculosis [TaxId: 1773]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: NHL repeat
family: NHL repeat
domain: Serine/threonine-protein kinase PknD
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=99.83  E-value=3.7e-19  Score=138.55  Aligned_cols=184  Identities=16%  Similarity=0.248  Sum_probs=132.5

Q ss_pred             CCcccEEEcCCCcEEEEe--CCCcEEEEccCCceeEeccc--CCccccceEEccCCCEEEEEeCCCcEEEEecCC-cEEE
Q 026118           10 NHPEDVSVDGNGVLYTAT--GDGWIKRMHPNGTWEDWHQV--GSQSLLGLTTTKENNVIIVCDSQQGLLKVSEEG-VTVL   84 (243)
Q Consensus        10 ~~p~~i~~d~~g~l~~~~--~~~~i~~~~~~g~~~~~~~~--~~~~~~~i~~~~~g~l~~v~~~~~gl~~~~~~g-~~~~   84 (243)
                      -.|.+|++|++|++|+++  ..+++.++++.+........  ...|. +++++++|++ |+++...+++++..++ ...+
T Consensus        14 ~~P~~vavd~dG~i~v~~~~~~~~i~~~~~~~~~~~~~~~~~~~~p~-gvav~~~g~i-~v~d~~~~~i~~~~~~~~~~~   91 (260)
T d1rwia_          14 LSPSGVAVDSAGNVYVTSEGMYGRVVKLATGSTGTTVLPFNGLYQPQ-GLAVDGAGTV-YVTDFNNRVVTLAAGSNNQTV   91 (260)
T ss_dssp             CCEEEEEECTTCCEEEEECSSSCEEEEEC----CEEECCCCSCCSCC-CEEECTTCCE-EEEETTTEEEEECTTCSCCEE
T ss_pred             CCCCEEEEcCCCCEEEEEcCCCCEEEEEcCCCceEEEeccCCccCce-EEEEcCCCCE-EEeeeeeceeeeeeeccceee
Confidence            379999999999999986  45678888765544433321  24578 9999999998 9999877777777333 2222


Q ss_pred             EeccCCCcccCCccEEEcCCCcEEEEeCCCCCCcccccccccccCCCceEEEEeCCCCeeEEe-eccccccceEEEcCCC
Q 026118           85 VSQFNGSQLRFANDVIEASDGSLYFTVSSTKFTPAEYYLDLVSGEPHGVLLKYDPSTNQTSLV-LDGLYFANGVALSEDE  163 (243)
Q Consensus        85 ~~~~~~~~~~~~~~l~~d~~G~l~v~~~~~~~~~~~~~~~~~~~~~~g~v~~~~~~~~~~~~~-~~~~~~~~gi~~~~dg  163 (243)
                      ..   ......|.+|+++++|++|+++..                 ...+++++..+...... ......|++|+++++|
T Consensus        92 ~~---~~~~~~p~~iavd~~g~i~v~d~~-----------------~~~~~~~~~~~~~~~~~~~~~~~~p~~i~~~~~g  151 (260)
T d1rwia_          92 LP---FDGLNYPEGLAVDTQGAVYVADRG-----------------NNRVVKLAAGSKTQTVLPFTGLNDPDGVAVDNSG  151 (260)
T ss_dssp             CC---CCSCCSEEEEEECTTCCEEEEEGG-----------------GTEEEEECTTCSSCEECCCCSCCSCCEEEECTTC
T ss_pred             ee---eeeeeecccccccccceeEeeccc-----------------cccccccccccceeeeeeecccCCcceeeecCCC
Confidence            11   122467889999999999999743                 34788898875544433 2456789999999999


Q ss_pred             CEEEEEEcCCCeEEEEEeecCCCcceEEeccCCCCCCCceEECCCCCEEEEEecCC
Q 026118          164 RFLVVCESWKFRCVKHFLKVSGRTDREIFIDNLPGGPDNVNLARDGSFWISIIKMD  219 (243)
Q Consensus       164 ~~l~v~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~i~~d~~G~lwv~~~~~~  219 (243)
                      + +|+++..++.|.+++.++.   ....+.......|.+|++|++|+|||++...+
T Consensus       152 ~-~~v~~~~~~~i~~~d~~~~---~~~~~~~~~~~~p~gi~~d~~g~l~vsd~~~~  203 (260)
T d1rwia_         152 N-VYVTDTDNNRVVKLEAESN---NQVVLPFTDITAPWGIAVDEAGTVYVTEHNTN  203 (260)
T ss_dssp             C-EEEEEGGGTEEEEECTTTC---CEEECCCSSCCSEEEEEECTTCCEEEEETTTT
T ss_pred             C-Eeeeccccccccccccccc---eeeeeeccccCCCccceeeeeeeeeeeecCCC
Confidence            8 9999998899999986652   22233223345799999999999999987654

>d1q7fa_ b.68.9.1 (A:) Brain tumor cg10719-pa {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: NHL repeat
family: NHL repeat
domain: Brain tumor cg10719-pa
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=99.78  E-value=7.9e-18  Score=132.20  Aligned_cols=197  Identities=14%  Similarity=0.192  Sum_probs=132.4

Q ss_pred             ccccCCcccEEEcCCCcEEEEe-CCCcEEEEccCCceeEec-c-------------------------------------
Q 026118            6 EGIVNHPEDVSVDGNGVLYTAT-GDGWIKRMHPNGTWEDWH-Q-------------------------------------   46 (243)
Q Consensus         6 ~g~~~~p~~i~~d~~g~l~~~~-~~~~i~~~~~~g~~~~~~-~-------------------------------------   46 (243)
                      .|.|..|.+|++|++|+||+++ .+.+|.+++++|++.... .                                     
T Consensus        19 ~g~f~~P~gvavd~dg~i~VaD~~n~rI~v~d~~G~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~i~~~   98 (279)
T d1q7fa_          19 EGQFTEPSGVAVNAQNDIIVADTNNHRIQIFDKEGRFKFQFGECGKRDSQLLYPNRVAVVRNSGDIIVTERSPTHQIQIY   98 (279)
T ss_dssp             TTCBSCEEEEEECTTCCEEEEEGGGTEEEEECTTSCEEEEECCBSSSTTCBSSEEEEEEETTTTEEEEEECGGGCEEEEE
T ss_pred             CCeECCccEEEEcCCCCEEEEECCCCEEEEEeCCCCEEEEecccCCCcccccccccccccccccccceeccCCccccccc
Confidence            4568899999999999999998 677898888766533210 0                                     


Q ss_pred             -------------cCCccccceEEccCCCEEEEEeCCC-cEEEEecCC-c-EEEEeccCCCcccCCccEEEcCCCcEEEE
Q 026118           47 -------------VGSQSLLGLTTTKENNVIIVCDSQQ-GLLKVSEEG-V-TVLVSQFNGSQLRFANDVIEASDGSLYFT  110 (243)
Q Consensus        47 -------------~~~~~~~~i~~~~~g~l~~v~~~~~-gl~~~~~~g-~-~~~~~~~~~~~~~~~~~l~~d~~G~l~v~  110 (243)
                                   ....|. +++++++|++ |+++... .+.++++++ . ..+..   ......+.+++++++|++|++
T Consensus        99 ~~~g~~~~~~~~~~~~~p~-~~avd~~G~i-~v~~~~~~~~~~~~~~g~~~~~~g~---~~~~~~~~~i~~d~~g~i~v~  173 (279)
T d1q7fa_          99 NQYGQFVRKFGATILQHPR-GVTVDNKGRI-IVVECKVMRVIIFDQNGNVLHKFGC---SKHLEFPNGVVVNDKQEIFIS  173 (279)
T ss_dssp             CTTSCEEEEECTTTCSCEE-EEEECTTSCE-EEEETTTTEEEEECTTSCEEEEEEC---TTTCSSEEEEEECSSSEEEEE
T ss_pred             cccccceeecCCCcccccc-eeccccCCcE-EEEeeccceeeEeccCCceeecccc---cccccccceeeeccceeEEee
Confidence                         001234 6777777777 6766543 366676555 2 22221   123456788999999999999


Q ss_pred             eCCCCCCcccccccccccCCCceEEEEeCCCCeeEEee--ccccccceEEEcCCCCEEEEEEcCC-CeEEEEEeecCCCc
Q 026118          111 VSSTKFTPAEYYLDLVSGEPHGVLLKYDPSTNQTSLVL--DGLYFANGVALSEDERFLVVCESWK-FRCVKHFLKVSGRT  187 (243)
Q Consensus       111 ~~~~~~~~~~~~~~~~~~~~~g~v~~~~~~~~~~~~~~--~~~~~~~gi~~~~dg~~l~v~~~~~-~~i~~~~~~~~~~~  187 (243)
                      +..                 .+.|+++++++..+..+.  .....|.+|+++++|+ +||++..+ ..|.+|+.++..  
T Consensus       174 d~~-----------------~~~V~~~d~~G~~~~~~g~~g~~~~P~giavD~~G~-i~Vad~~~~~~v~~f~~~G~~--  233 (279)
T d1q7fa_         174 DNR-----------------AHCVKVFNYEGQYLRQIGGEGITNYPIGVGINSNGE-ILIADNHNNFNLTIFTQDGQL--  233 (279)
T ss_dssp             EGG-----------------GTEEEEEETTCCEEEEESCTTTSCSEEEEEECTTCC-EEEEECSSSCEEEEECTTSCE--
T ss_pred             ecc-----------------ccceeeeecCCceeeeecccccccCCcccccccCCe-EEEEECCCCcEEEEECCCCCE--
Confidence            643                 357999999854444442  2356799999999999 99998754 468888765531  


Q ss_pred             ceEEecc-CCCCCCCceEECCCCCEEEEEecCCchhhhhhhc
Q 026118          188 DREIFID-NLPGGPDNVNLARDGSFWISIIKMDPKGIQALQS  228 (243)
Q Consensus       188 ~~~~~~~-~~~~~~~~i~~d~~G~lwv~~~~~~~~~~~~~~~  228 (243)
                       ...+.. .....|.+++++++|+|||++...+...++....
T Consensus       234 -~~~~~~~~~~~~p~~vav~~dG~l~V~~~n~~v~~fr~~~~  274 (279)
T d1q7fa_         234 -ISALESKVKHAQCFDVALMDDGSVVLASKDYRLYIYRYVQL  274 (279)
T ss_dssp             -EEEEEESSCCSCEEEEEEETTTEEEEEETTTEEEEEECSCC
T ss_pred             -EEEEeCCCCCCCEeEEEEeCCCcEEEEeCCCeEEEEEeeee
Confidence             122221 2234689999999999999876544445554443

>d1v04a_ b.68.6.2 (A:) Serum paraoxonase/arylesterase 1, PON1 {Rabit (Oryctolagus cuniculus) [TaxId: 9986]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: Serum paraoxonase/arylesterase 1, PON1
domain: Serum paraoxonase/arylesterase 1, PON1
species: Rabit (Oryctolagus cuniculus) [TaxId: 9986]

Probab=99.78  E-value=7.1e-17  Score=129.88  Aligned_cols=210  Identities=19%  Similarity=0.303  Sum_probs=139.7

Q ss_pred             cccccCCcccEEEcCCCcEEEEeC-------------CCcEEEEcc---CCceeEeccc-------CCccccceEE--cc
Q 026118            5 GEGIVNHPEDVSVDGNGVLYTATG-------------DGWIKRMHP---NGTWEDWHQV-------GSQSLLGLTT--TK   59 (243)
Q Consensus         5 ~~g~~~~p~~i~~d~~g~l~~~~~-------------~~~i~~~~~---~g~~~~~~~~-------~~~~~~~i~~--~~   59 (243)
                      .+|...+||.|+++++|.+|+++.             .|.|+.+|.   ..+...+...       .-.|. ||.+  +.
T Consensus        30 i~g~~~G~EDi~~~~dg~~~issg~~~~~~~~~~~~~~G~i~~~dl~~~~~~~~~l~~~~~~~~~~~f~Ph-Gi~l~~~~  108 (340)
T d1v04a_          30 VKGIDNGSEDLEILPNGLAFISSGLKYPGIMSFDPDKSGKILLMDLNEKEPAVSELEIIGNTLDISSFNPH-GISTFIDD  108 (340)
T ss_dssp             CTTCCSCCCEEEECTTSEEEEEECCCC--------CCCCEEEEEETTSSSCCEEECEEECSSSCGGGCCEE-EEEEEECT
T ss_pred             cCCCCCCcceEEECCCCcEEEEecCccCCCCCCCCCCCCeEEEEecCCCCCcceEEEecCCCCCCcceecc-ceeEEEcC
Confidence            355456899999999999887752             377888872   2233322211       12466 7654  56


Q ss_pred             CCC-EEEEEeCC---Cc--EEEEecCC-cEEEEeccCCCcccCCccEEEcCCCcEEEEeCCCCCCcccccccccccCCCc
Q 026118           60 ENN-VIIVCDSQ---QG--LLKVSEEG-VTVLVSQFNGSQLRFANDVIEASDGSLYFTVSSTKFTPAEYYLDLVSGEPHG  132 (243)
Q Consensus        60 ~g~-l~~v~~~~---~g--l~~~~~~g-~~~~~~~~~~~~~~~~~~l~~d~~G~l~v~~~~~~~~~~~~~~~~~~~~~~g  132 (243)
                      +|. .|++.++.   ..  ++.++.++ ...............|+++++..+|.+|+|+.......-............+
T Consensus       109 dg~~~L~vvnH~~~~~~ieif~~~~~~~~l~~~~~v~~~~~~~pNDv~~~~~g~fy~Tnd~~~~~~~~~~~e~~~~~~~g  188 (340)
T d1v04a_         109 DNTVYLLVVNHPGSSSTVEVFKFQEEEKSLLHLKTIRHKLLPSVNDIVAVGPEHFYATNDHYFIDPYLKSWEMHLGLAWS  188 (340)
T ss_dssp             TCCEEEEEEECSTTCCEEEEEEEETTTTEEEEEEEECCTTCSSEEEEEEEETTEEEEEESCSCCSHHHHHHHHHTTCCCE
T ss_pred             CCcEEEEEEeccCCCceeEEEEEeCCCCeEEEEeecCCccccCccceEEecCCCEEEecCccCcChhhhhhhHhhcCCce
Confidence            665 34787763   22  45555333 2223333445566789999999999999997642111100011122334567


Q ss_pred             eEEEEeCCCCeeEEeeccccccceEEEcCCCCEEEEEEcCCCeEEEEEeecCCCcceEEeccCCCCCCCceEECC-CCCE
Q 026118          133 VLLKYDPSTNQTSLVLDGLYFANGVALSEDERFLVVCESWKFRCVKHFLKVSGRTDREIFIDNLPGGPDNVNLAR-DGSF  211 (243)
Q Consensus       133 ~v~~~~~~~~~~~~~~~~~~~~~gi~~~~dg~~l~v~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~i~~d~-~G~l  211 (243)
                      .|+.+++.  +.+.+..+...||||++++|+++|||++....+|++|+.++.......... ..++.||+|.+|+ +|.+
T Consensus       189 ~v~~~~~~--~~~~~~~~l~~pNGI~~s~d~~~lyVa~t~~~~i~~y~~~~~~~l~~~~~~-~l~~~pDNi~~d~~~g~l  265 (340)
T d1v04a_         189 FVTYYSPN--DVRVVAEGFDFANGINISPDGKYVYIAELLAHKIHVYEKHANWTLTPLRVL-SFDTLVDNISVDPVTGDL  265 (340)
T ss_dssp             EEEEECSS--CEEEEEEEESSEEEEEECTTSSEEEEEEGGGTEEEEEEECTTSCEEEEEEE-ECSSEEEEEEECTTTCCE
T ss_pred             eEEEEcCC--ceEEEcCCCCccceeEECCCCCEEEEEeCCCCeEEEEEeCCCcccceEEEe-cCCCCCCccEEecCCCEE
Confidence            88899875  556667788999999999999999999999999999999864322222222 4678899999995 7899


Q ss_pred             EEEEecC
Q 026118          212 WISIIKM  218 (243)
Q Consensus       212 wv~~~~~  218 (243)
                      |++....
T Consensus       266 wva~~p~  272 (340)
T d1v04a_         266 WVGCHPN  272 (340)
T ss_dssp             EEEEESC
T ss_pred             EEEECCc
Confidence            9998754

>d1pjxa_ b.68.6.1 (A:) Diisopropylfluorophosphatase (phosphotriesterase, DFP) {Squid (Loligo vulgaris) [TaxId: 6622]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: SGL-like
domain: Diisopropylfluorophosphatase (phosphotriesterase, DFP)
species: Squid (Loligo vulgaris) [TaxId: 6622]

Probab=99.74  E-value=1.4e-16  Score=127.03  Aligned_cols=157  Identities=13%  Similarity=0.121  Sum_probs=117.6

Q ss_pred             cCCcccEEEcCCCcEEEEeC----------------CCcEEEEccCCceeEecccCCccccceEEccCCC----EEEEEe
Q 026118            9 VNHPEDVSVDGNGVLYTATG----------------DGWIKRMHPNGTWEDWHQVGSQSLLGLTTTKENN----VIIVCD   68 (243)
Q Consensus         9 ~~~p~~i~~d~~g~l~~~~~----------------~~~i~~~~~~g~~~~~~~~~~~~~~~i~~~~~g~----l~~v~~   68 (243)
                      +..|..+++|++|+||+++.                .++|++++++|+..........|+ ||+++++++    .||+++
T Consensus       116 ~~~pndl~~d~~G~lyvtd~~~~~~~~~~~~~~~~~~G~v~~~~~dg~~~~~~~~~~~pN-Gi~~~~d~d~~~~~lyv~d  194 (314)
T d1pjxa_         116 MQGCNDCAFDYEGNLWITAPAGEVAPADYTRSMQEKFGSIYCFTTDGQMIQVDTAFQFPN-GIAVRHMNDGRPYQLIVAE  194 (314)
T ss_dssp             CBCCCEEEECTTSCEEEEECBCBCTTSCCCBTTSSSCEEEEEECTTSCEEEEEEEESSEE-EEEEEECTTSCEEEEEEEE
T ss_pred             cCCCcEEEECCCCCEEEecCccCcccccccceeccCCceEEEEeecCceeEeeCCcceee-eeEECCCCCcceeEEEEEe
Confidence            56789999999999999862                357999998888776655456688 999987764    349987


Q ss_pred             CCC-cEEEEe--cCC-cE--EEEeccCCCcccCCccEEEcCCCcEEEEeCCCCCCcccccccccccCCCceEEEEeCCCC
Q 026118           69 SQQ-GLLKVS--EEG-VT--VLVSQFNGSQLRFANDVIEASDGSLYFTVSSTKFTPAEYYLDLVSGEPHGVLLKYDPSTN  142 (243)
Q Consensus        69 ~~~-gl~~~~--~~g-~~--~~~~~~~~~~~~~~~~l~~d~~G~l~v~~~~~~~~~~~~~~~~~~~~~~g~v~~~~~~~~  142 (243)
                      ... .|++++  .++ ..  .+.....+.....|.+|++|++|+||+++..                 .++|++|+++++
T Consensus       195 ~~~~~i~~~d~~~~g~~~~~~~~~~~~~~~~~~pdGiavD~~GnlyVa~~~-----------------~g~I~~~dp~~g  257 (314)
T d1pjxa_         195 TPTKKLWSYDIKGPAKIENKKVWGHIPGTHEGGADGMDFDEDNNLLVANWG-----------------SSHIEVFGPDGG  257 (314)
T ss_dssp             TTTTEEEEEEEEETTEEEEEEEEEECCCCSSCEEEEEEEBTTCCEEEEEET-----------------TTEEEEECTTCB
T ss_pred             ecccceEEeeccCccccceeeEEEEccccccccceeeEEecCCcEEEEEcC-----------------CCEEEEEeCCCC
Confidence            654 588887  345 22  2222233333346889999999999999643                 368999999977


Q ss_pred             eeEE-eeccccccceEEEcCCCCEEEEEEcCCCeEEEEEeec
Q 026118          143 QTSL-VLDGLYFANGVALSEDERFLVVCESWKFRCVKHFLKV  183 (243)
Q Consensus       143 ~~~~-~~~~~~~~~gi~~~~dg~~l~v~~~~~~~i~~~~~~~  183 (243)
                      ++.. +......|.+++|.+|++.|||++..+++|++++...
T Consensus       258 ~~~~~i~~p~~~~t~~afg~d~~~lyVt~~~~g~i~~~~~~~  299 (314)
T d1pjxa_         258 QPKMRIRCPFEKPSNLHFKPQTKTIFVTEHENNAVWKFEWQR  299 (314)
T ss_dssp             SCSEEEECSSSCEEEEEECTTSSEEEEEETTTTEEEEEECSS
T ss_pred             EEEEEEECCCCCEEEEEEeCCCCEEEEEECCCCcEEEEECCC
Confidence            6543 3334567889999999999999999899999999753

>d1npea_ b.68.5.1 (A:) Nidogen {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: YWTD domain
family: YWTD domain
domain: Nidogen
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.61  E-value=1.3e-13  Score=106.91  Aligned_cols=185  Identities=17%  Similarity=0.148  Sum_probs=130.1

Q ss_pred             CCcccEEEcC-CCcEEEEe-CCCcEEEEccCCc-eeEec-ccCCccccceEEccCCCEEEEEeCC-CcEEEEecCC--cE
Q 026118           10 NHPEDVSVDG-NGVLYTAT-GDGWIKRMHPNGT-WEDWH-QVGSQSLLGLTTTKENNVIIVCDSQ-QGLLKVSEEG--VT   82 (243)
Q Consensus        10 ~~p~~i~~d~-~g~l~~~~-~~~~i~~~~~~g~-~~~~~-~~~~~~~~~i~~~~~g~l~~v~~~~-~gl~~~~~~g--~~   82 (243)
                      ..+.+|++|. ++.||+++ ..+.|++.+.++. .+.+. .....|. +|++|.-++.||+++.. ..|.+++.+|  .+
T Consensus        36 ~~~~~ld~D~~~~~iywsd~~~~~I~~~~l~g~~~~~v~~~~~~~p~-~iAvD~~~~~lY~~d~~~~~I~~~~~dg~~~~  114 (263)
T d1npea_          36 KVIIGLAFDCVDKVVYWTDISEPSIGRASLHGGEPTTIIRQDLGSPE-GIALDHLGRTIFWTDSQLDRIEVAKMDGTQRR  114 (263)
T ss_dssp             EEEEEEEEETTTTEEEEEETTTTEEEEEESSSCCCEEEECTTCCCEE-EEEEETTTTEEEEEETTTTEEEEEETTSCSCE
T ss_pred             CcEEEEEEEeCCCEEEEEECCCCeEEEEEcccCCcEEEEEecccccc-EEEEeccCCeEEEeccCCCEEEEEecCCceEE
Confidence            3456788995 67899987 6678999885543 33332 2235678 99999644444888865 4577888555  44


Q ss_pred             EEEeccCCCcccCCccEEEcC-CCcEEEEeCCCCCCcccccccccccCCCceEEEEeCCCCeeEEe-eccccccceEEEc
Q 026118           83 VLVSQFNGSQLRFANDVIEAS-DGSLYFTVSSTKFTPAEYYLDLVSGEPHGVLLKYDPSTNQTSLV-LDGLYFANGVALS  160 (243)
Q Consensus        83 ~~~~~~~~~~~~~~~~l~~d~-~G~l~v~~~~~~~~~~~~~~~~~~~~~~g~v~~~~~~~~~~~~~-~~~~~~~~gi~~~  160 (243)
                      .+...    ....|.++++|| .|.+|+++.+               .....|++.+.++...+.+ ..+...|++|++|
T Consensus       115 ~l~~~----~l~~p~~l~vdp~~g~ly~t~~~---------------~~~~~I~r~~~dG~~~~~i~~~~~~~P~glaiD  175 (263)
T d1npea_         115 VLFDT----GLVNPRGIVTDPVRGNLYWTDWN---------------RDNPKIETSHMDGTNRRILAQDNLGLPNGLTFD  175 (263)
T ss_dssp             EEECS----SCSSEEEEEEETTTTEEEEEECC---------------SSSCEEEEEETTSCCCEEEECTTCSCEEEEEEE
T ss_pred             EEecc----cccCCcEEEEecccCcEEEeecC---------------CCCcEEEEecCCCCCceeeeeecccccceEEEe
Confidence            44321    235688999998 5789988654               1234799999986554444 3567889999999


Q ss_pred             CCCCEEEEEEcCCCeEEEEEeecCCCcceEEeccCCCCCCCceEECCCCCEEEEEecCC
Q 026118          161 EDERFLVVCESWKFRCVKHFLKVSGRTDREIFIDNLPGGPDNVNLARDGSFWISIIKMD  219 (243)
Q Consensus       161 ~dg~~l~v~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~i~~d~~G~lwv~~~~~~  219 (243)
                      +.++.|||++...+.|.++++++.   ..+.+.... ..|.+|+++ +++||++++...
T Consensus       176 ~~~~~lYw~d~~~~~I~~~~~~g~---~~~~v~~~~-~~P~~lav~-~~~lYwtd~~~~  229 (263)
T d1npea_         176 AFSSQLCWVDAGTHRAECLNPAQP---GRRKVLEGL-QYPFAVTSY-GKNLYYTDWKTN  229 (263)
T ss_dssp             TTTTEEEEEETTTTEEEEEETTEE---EEEEEEECC-CSEEEEEEE-TTEEEEEETTTT
T ss_pred             ecCcEEEEEeCCCCEEEEEECCCC---CeEEEECCC-CCcEEEEEE-CCEEEEEECCCC
Confidence            988889999998999999998763   233333332 368899998 578999987654

>d1ijqa1 b.68.5.1 (A:377-642) Low density lipoprotein (LDL) receptor {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: YWTD domain
family: YWTD domain
domain: Low density lipoprotein (LDL) receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.59  E-value=7.1e-13  Score=102.79  Aligned_cols=186  Identities=11%  Similarity=0.096  Sum_probs=128.6

Q ss_pred             cCCcccEEEcC-CCcEEEEe-CCCcEEEEccCCc-----eeE-ecccCCccccceEEccCCCEEEEEeCCC-cEEEEecC
Q 026118            9 VNHPEDVSVDG-NGVLYTAT-GDGWIKRMHPNGT-----WED-WHQVGSQSLLGLTTTKENNVIIVCDSQQ-GLLKVSEE   79 (243)
Q Consensus         9 ~~~p~~i~~d~-~g~l~~~~-~~~~i~~~~~~g~-----~~~-~~~~~~~~~~~i~~~~~g~l~~v~~~~~-gl~~~~~~   79 (243)
                      +..|.+|.+|. ++.||+++ ..+.|++.+.++.     ... .......|. +|++|..++.+|+++... .|.+++.+
T Consensus        29 ~~~~~~id~d~~~~~lYw~D~~~~~I~~~~l~~~~~~~~~~~~~~~~~~~p~-glAvD~~~~~lY~~d~~~~~I~v~~~~  107 (266)
T d1ijqa1          29 LRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRDIQAPD-GLAVDWIHSNIYWTDSVLGTVSVADTK  107 (266)
T ss_dssp             CSSEEEEEEETTTTEEEEEETTTTEEEEEEC--------CEEEECSSCSCCC-EEEEETTTTEEEEEETTTTEEEEEETT
T ss_pred             CCceEEEEEEeCCCEEEEEECCCCEEEEEEecCCCCCcceEEEEeCCCCCcc-eEEEeeccceEEEEecCCCEEEeEecC
Confidence            67888899996 66899988 5677888764331     122 222234577 999996554448888654 47777755


Q ss_pred             C--cEEEEeccCCCcccCCccEEEcC-CCcEEEEeCCCCCCcccccccccccCCCceEEEEeCCCCeeEEee-ccccccc
Q 026118           80 G--VTVLVSQFNGSQLRFANDVIEAS-DGSLYFTVSSTKFTPAEYYLDLVSGEPHGVLLKYDPSTNQTSLVL-DGLYFAN  155 (243)
Q Consensus        80 g--~~~~~~~~~~~~~~~~~~l~~d~-~G~l~v~~~~~~~~~~~~~~~~~~~~~~g~v~~~~~~~~~~~~~~-~~~~~~~  155 (243)
                      |  ...+...    ....|.+|++|+ .|.+|+++.+                ..++|++.+.++...+.+. .....|+
T Consensus       108 g~~~~~~~~~----~~~~P~~l~vd~~~g~ly~~~~~----------------~~~~I~r~~~dGs~~~~l~~~~~~~p~  167 (266)
T d1ijqa1         108 GVKRKTLFRE----NGSKPRAIVVDPVHGFMYWTDWG----------------TPAKIKKGGLNGVDIYSLVTENIQWPN  167 (266)
T ss_dssp             SSSEEEEEEC----TTCCEEEEEEETTTTEEEEEECS----------------SSCEEEEEETTSCCEEEEECSSCSCEE
T ss_pred             CceEEEEEcC----CCCCcceEEEEcccCeEEEeccC----------------CCcceeEeccCCCceecccccccceee
Confidence            5  3333221    135688999998 6889998743                2358999999966555554 4568899


Q ss_pred             eEEEcCCCCEEEEEEcCCCeEEEEEeecCCCcceEEeccCC--CCCCCceEECCCCCEEEEEecCC
Q 026118          156 GVALSEDERFLVVCESWKFRCVKHFLKVSGRTDREIFIDNL--PGGPDNVNLARDGSFWISIIKMD  219 (243)
Q Consensus       156 gi~~~~dg~~l~v~~~~~~~i~~~~~~~~~~~~~~~~~~~~--~~~~~~i~~d~~G~lwv~~~~~~  219 (243)
                      +|++++.++.|||++...+.|.++++++..   .+.+....  ...|.+|+++ +++||++++..+
T Consensus       168 gl~iD~~~~~lYw~d~~~~~I~~~~~dG~~---~~~~~~~~~~~~~p~~lav~-~~~ly~td~~~~  229 (266)
T d1ijqa1         168 GITLDLLSGRLYWVDSKLHSISSIDVNGGN---RKTILEDEKRLAHPFSLAVF-EDKVFWTDIINE  229 (266)
T ss_dssp             EEEEETTTTEEEEEETTTTEEEEEETTSCS---CEEEEECTTTTSSEEEEEEE-TTEEEEEETTTT
T ss_pred             EEEeeccccEEEEecCCcCEEEEEECCCCC---EEEEEeCCCcccccEEEEEE-CCEEEEEECCCC
Confidence            999999888899999999999999987642   22332222  2357889998 568999886644

>d1npea_ b.68.5.1 (A:) Nidogen {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: YWTD domain
family: YWTD domain
domain: Nidogen
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.57  E-value=7.8e-13  Score=102.35  Aligned_cols=178  Identities=14%  Similarity=0.128  Sum_probs=125.3

Q ss_pred             ecccccCCcccEEEcC-CCcEEEEe-CCCcEEEEccCCceeE-e-cccCCccccceEEccCCCEEEEEeCCC---cEEEE
Q 026118            4 LGEGIVNHPEDVSVDG-NGVLYTAT-GDGWIKRMHPNGTWED-W-HQVGSQSLLGLTTTKENNVIIVCDSQQ---GLLKV   76 (243)
Q Consensus         4 ~~~g~~~~p~~i~~d~-~g~l~~~~-~~~~i~~~~~~g~~~~-~-~~~~~~~~~~i~~~~~g~l~~v~~~~~---gl~~~   76 (243)
                      +....+..|.+|++|. .+.||+++ ..+.|.+.+.++.... . ......|. +|++||...++|++..+.   .|++.
T Consensus        73 v~~~~~~~p~~iAvD~~~~~lY~~d~~~~~I~~~~~dg~~~~~l~~~~l~~p~-~l~vdp~~g~ly~t~~~~~~~~I~r~  151 (263)
T d1npea_          73 IIRQDLGSPEGIALDHLGRTIFWTDSQLDRIEVAKMDGTQRRVLFDTGLVNPR-GIVTDPVRGNLYWTDWNRDNPKIETS  151 (263)
T ss_dssp             EECTTCCCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEECSSCSSEE-EEEEETTTTEEEEEECCSSSCEEEEE
T ss_pred             EEEeccccccEEEEeccCCeEEEeccCCCEEEEEecCCceEEEEecccccCCc-EEEEecccCcEEEeecCCCCcEEEEe
Confidence            3444477899999995 77899988 5678999887765432 2 22235677 999998766668877543   38888


Q ss_pred             ecCC--cEEEEeccCCCcccCCccEEEcCC-CcEEEEeCCCCCCcccccccccccCCCceEEEEeCCCCeeEEeeccccc
Q 026118           77 SEEG--VTVLVSQFNGSQLRFANDVIEASD-GSLYFTVSSTKFTPAEYYLDLVSGEPHGVLLKYDPSTNQTSLVLDGLYF  153 (243)
Q Consensus        77 ~~~g--~~~~~~~~~~~~~~~~~~l~~d~~-G~l~v~~~~~~~~~~~~~~~~~~~~~~g~v~~~~~~~~~~~~~~~~~~~  153 (243)
                      +.+|  .+.+..    .....|.+|++|+. ++||+++..                 .+.|.+++.++...+.+..+...
T Consensus       152 ~~dG~~~~~i~~----~~~~~P~glaiD~~~~~lYw~d~~-----------------~~~I~~~~~~g~~~~~v~~~~~~  210 (263)
T d1npea_         152 HMDGTNRRILAQ----DNLGLPNGLTFDAFSSQLCWVDAG-----------------THRAECLNPAQPGRRKVLEGLQY  210 (263)
T ss_dssp             ETTSCCCEEEEC----TTCSCEEEEEEETTTTEEEEEETT-----------------TTEEEEEETTEEEEEEEEECCCS
T ss_pred             cCCCCCceeeee----ecccccceEEEeecCcEEEEEeCC-----------------CCEEEEEECCCCCeEEEECCCCC
Confidence            8555  444432    12457889999975 679999754                 35899999996666667777788


Q ss_pred             cceEEEcCCCCEEEEEEcCCCeEEEEEeecCCCcceEEeccCCCCCCCceEECC
Q 026118          154 ANGVALSEDERFLVVCESWKFRCVKHFLKVSGRTDREIFIDNLPGGPDNVNLAR  207 (243)
Q Consensus       154 ~~gi~~~~dg~~l~v~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~i~~d~  207 (243)
                      |.+|+++  +++|||++..+++|++++..++  ...+++.......|.||++-.
T Consensus       211 P~~lav~--~~~lYwtd~~~~~I~~~~~~~g--~~~~~~~~~~~~~~~gi~v~~  260 (263)
T d1npea_         211 PFAVTSY--GKNLYYTDWKTNSVIAMDLAIS--KEMDTFHPHKQTRLYGITIAL  260 (263)
T ss_dssp             EEEEEEE--TTEEEEEETTTTEEEEEETTTT--EEEEEECCSSCCCCCCEEEEC
T ss_pred             cEEEEEE--CCEEEEEECCCCEEEEEECCCC--ccceEECCCCCCCcceEEEeC
Confidence            9999987  4469999999999999997643  223344333344677887643

>d2dg1a1 b.68.6.1 (A:6-324) Lactonase Drp35 {Staphylococcus aureus [TaxId: 1280]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: SGL-like
domain: Lactonase Drp35
species: Staphylococcus aureus [TaxId: 1280]

Probab=99.56  E-value=3.4e-13  Score=107.41  Aligned_cols=183  Identities=15%  Similarity=0.109  Sum_probs=120.4

Q ss_pred             cCCcccEEEcCCCcEEEEeC-----CCcEEEEccCC-ceeEecc---cCCccccceEEccCCCEEEEEeCC-------Cc
Q 026118            9 VNHPEDVSVDGNGVLYTATG-----DGWIKRMHPNG-TWEDWHQ---VGSQSLLGLTTTKENNVIIVCDSQ-------QG   72 (243)
Q Consensus         9 ~~~p~~i~~d~~g~l~~~~~-----~~~i~~~~~~g-~~~~~~~---~~~~~~~~i~~~~~g~l~~v~~~~-------~g   72 (243)
                      ...|.+|+++++|+||++..     .+.+..++..+ .......   ....++ +++++++|++ |+++..       .+
T Consensus        81 ~~~p~gla~~~dG~l~va~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~n-d~~~d~~G~l-~vtd~~~~~~~~~g~  158 (319)
T d2dg1a1          81 KANPAAIKIHKDGRLFVCYLGDFKSTGGIFAATENGDNLQDIIEDLSTAYCID-DMVFDSKGGF-YFTDFRGYSTNPLGG  158 (319)
T ss_dssp             SSSEEEEEECTTSCEEEEECTTSSSCCEEEEECTTSCSCEEEECSSSSCCCEE-EEEECTTSCE-EEEECCCBTTBCCEE
T ss_pred             CCCeeEEEECCCCCEEEEecCCCccceeEEEEcCCCceeeeeccCCCcccCCc-ceeEEeccce-eecccccccccCcce
Confidence            34789999999999999862     34688887543 3333321   123466 8999999998 998753       24


Q ss_pred             EEEEecCC--cEEEEeccCCCcccCCccEEEcCCCc-EEEEeCCCCCCcccccccccccCCCceEEEEeCCC-C-eeEEe
Q 026118           73 LLKVSEEG--VTVLVSQFNGSQLRFANDVIEASDGS-LYFTVSSTKFTPAEYYLDLVSGEPHGVLLKYDPST-N-QTSLV  147 (243)
Q Consensus        73 l~~~~~~g--~~~~~~~~~~~~~~~~~~l~~d~~G~-l~v~~~~~~~~~~~~~~~~~~~~~~g~v~~~~~~~-~-~~~~~  147 (243)
                      ++++++++  .+.+..     ....|++|+++++|+ +|++++.                 .+.|++|+.+. + .....
T Consensus       159 v~~~~~dg~~~~~~~~-----~~~~pnGia~s~dg~~lyvad~~-----------------~~~I~~~d~~~~g~~~~~~  216 (319)
T d2dg1a1         159 VYYVSPDFRTVTPIIQ-----NISVANGIALSTDEKVLWVTETT-----------------ANRLHRIALEDDGVTIQPF  216 (319)
T ss_dssp             EEEECTTSCCEEEEEE-----EESSEEEEEECTTSSEEEEEEGG-----------------GTEEEEEEECTTSSSEEEE
T ss_pred             eEEEecccceeEEEee-----ccceeeeeeeccccceEEEeccc-----------------CCceEEEEEcCCCceeccc
Confidence            88888554  444432     235688999999986 9999753                 35788886532 1 11111


Q ss_pred             -------eccccccceEEEcCCCCEEEEEEcCCCeEEEEEeecCCCcceEEecc--CCCCCCCceEECCCCC-EEEEEe
Q 026118          148 -------LDGLYFANGVALSEDERFLVVCESWKFRCVKHFLKVSGRTDREIFID--NLPGGPDNVNLARDGS-FWISII  216 (243)
Q Consensus       148 -------~~~~~~~~gi~~~~dg~~l~v~~~~~~~i~~~~~~~~~~~~~~~~~~--~~~~~~~~i~~d~~G~-lwv~~~  216 (243)
                             ......|.||++|++|+ |||+...++.|.+|++++..+.....-..  .....+.++++.++++ +|+.+.
T Consensus       217 ~~~~~~~~~~~~~PdGl~vD~~G~-l~Va~~~~g~V~~~~p~G~~l~~i~~P~~~~~~~~~~~~~~~~~~~~~~~~t~~  294 (319)
T d2dg1a1         217 GATIPYYFTGHEGPDSCCIDSDDN-LYVAMYGQGRVLVFNKRGYPIGQILIPGRDEGHMLRSTHPQFIPGTNQLIICSN  294 (319)
T ss_dssp             EEEEEEECCSSSEEEEEEEBTTCC-EEEEEETTTEEEEECTTSCEEEEEECTTGGGTCSCBCCEEEECTTSCEEEEEEE
T ss_pred             cceeeeccCCccceeeeeEcCCCC-EEEEEcCCCEEEEECCCCcEEEEEeCCCcCCCcCceeeeEEEeCCCCEEEEEcC
Confidence                   12245689999999999 99999989999999987643322211110  1112456788877666 555543

>d1q7fa_ b.68.9.1 (A:) Brain tumor cg10719-pa {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: NHL repeat
family: NHL repeat
domain: Brain tumor cg10719-pa
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=99.54  E-value=6.6e-13  Score=103.64  Aligned_cols=153  Identities=16%  Similarity=0.140  Sum_probs=111.8

Q ss_pred             ccccCCcccEEEcCCCcEEEEe-CCCcEEEEccCCceeEec---ccCCccccceEEccCCCEEEEEeCCC-cEEEEecCC
Q 026118            6 EGIVNHPEDVSVDGNGVLYTAT-GDGWIKRMHPNGTWEDWH---QVGSQSLLGLTTTKENNVIIVCDSQQ-GLLKVSEEG   80 (243)
Q Consensus         6 ~g~~~~p~~i~~d~~g~l~~~~-~~~~i~~~~~~g~~~~~~---~~~~~~~~~i~~~~~g~l~~v~~~~~-gl~~~~~~g   80 (243)
                      ...+..|.++++|++|.+|+++ ....+.+++++++.....   .....+. +++++++|++ |+++... .|.+++.+|
T Consensus       110 ~~~~~~p~~~avd~~G~i~v~~~~~~~~~~~~~~g~~~~~~g~~~~~~~~~-~i~~d~~g~i-~v~d~~~~~V~~~d~~G  187 (279)
T d1q7fa_         110 ATILQHPRGVTVDNKGRIIVVECKVMRVIIFDQNGNVLHKFGCSKHLEFPN-GVVVNDKQEI-FISDNRAHCVKVFNYEG  187 (279)
T ss_dssp             TTTCSCEEEEEECTTSCEEEEETTTTEEEEECTTSCEEEEEECTTTCSSEE-EEEECSSSEE-EEEEGGGTEEEEEETTC
T ss_pred             CCcccccceeccccCCcEEEEeeccceeeEeccCCceeecccccccccccc-eeeeccceeE-EeeeccccceeeeecCC
Confidence            3446789999999999999988 567799999888754321   1124466 8999999998 8888653 577888766


Q ss_pred             --cEEEEeccCCCcccCCccEEEcCCCcEEEEeCCCCCCcccccccccccCCCceEEEEeCCCCeeEE-eec--cccccc
Q 026118           81 --VTVLVSQFNGSQLRFANDVIEASDGSLYFTVSSTKFTPAEYYLDLVSGEPHGVLLKYDPSTNQTSL-VLD--GLYFAN  155 (243)
Q Consensus        81 --~~~~~~~~~~~~~~~~~~l~~d~~G~l~v~~~~~~~~~~~~~~~~~~~~~~g~v~~~~~~~~~~~~-~~~--~~~~~~  155 (243)
                        ...+.  .. .....|.+|++|++|++|+++..                .+..|.+++++ |++.. +..  ....|.
T Consensus       188 ~~~~~~g--~~-g~~~~P~giavD~~G~i~Vad~~----------------~~~~v~~f~~~-G~~~~~~~~~~~~~~p~  247 (279)
T d1q7fa_         188 QYLRQIG--GE-GITNYPIGVGINSNGEILIADNH----------------NNFNLTIFTQD-GQLISALESKVKHAQCF  247 (279)
T ss_dssp             CEEEEES--CT-TTSCSEEEEEECTTCCEEEEECS----------------SSCEEEEECTT-SCEEEEEEESSCCSCEE
T ss_pred             ceeeeec--cc-ccccCCcccccccCCeEEEEECC----------------CCcEEEEECCC-CCEEEEEeCCCCCCCEe
Confidence              32332  11 23567899999999999999753                23468889987 66443 322  234689


Q ss_pred             eEEEcCCCCEEEEEEcCCCeEEEEEee
Q 026118          156 GVALSEDERFLVVCESWKFRCVKHFLK  182 (243)
Q Consensus       156 gi~~~~dg~~l~v~~~~~~~i~~~~~~  182 (243)
                      ++++++||+ |||++ .+++|.+|...
T Consensus       248 ~vav~~dG~-l~V~~-~n~~v~~fr~~  272 (279)
T d1q7fa_         248 DVALMDDGS-VVLAS-KDYRLYIYRYV  272 (279)
T ss_dssp             EEEEETTTE-EEEEE-TTTEEEEEECS
T ss_pred             EEEEeCCCc-EEEEe-CCCeEEEEEee
Confidence            999999997 99987 57889888765

>d2p4oa1 b.68.6.3 (A:4-305) Hypothetical protein All0351 homologue {Nostoc punctiforme [TaxId: 272131]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: All0351-like
domain: Hypothetical protein All0351 homologue
species: Nostoc punctiforme [TaxId: 272131]

Probab=99.49  E-value=2.3e-12  Score=101.60  Aligned_cols=184  Identities=14%  Similarity=0.106  Sum_probs=121.5

Q ss_pred             CCcccEEEcCCCcEEEEe-CCCcEEEEc---cCCceeEecc--cCCccccceEEccCCCEEEEEeCC-CcEEEEe-cCC-
Q 026118           10 NHPEDVSVDGNGVLYTAT-GDGWIKRMH---PNGTWEDWHQ--VGSQSLLGLTTTKENNVIIVCDSQ-QGLLKVS-EEG-   80 (243)
Q Consensus        10 ~~p~~i~~d~~g~l~~~~-~~~~i~~~~---~~g~~~~~~~--~~~~~~~~i~~~~~g~l~~v~~~~-~gl~~~~-~~g-   80 (243)
                      ..|.+++++++|+||++. .++.+++++   ..++...+..  ....++ +++++++|++ |+++.. ..+++++ ..+ 
T Consensus        68 ~~~~gla~~~dG~l~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n-~i~~~~~g~~-~v~~~~~~~i~~~~~~~~~  145 (302)
T d2p4oa1          68 GKVSGLAFTSNGDLVATGWNADSIPVVSLVKSDGTVETLLTLPDAIFLN-GITPLSDTQY-LTADSYRGAIWLIDVVQPS  145 (302)
T ss_dssp             SEEEEEEECTTSCEEEEEECTTSCEEEEEECTTSCEEEEEECTTCSCEE-EEEESSSSEE-EEEETTTTEEEEEETTTTE
T ss_pred             CCcceEEEcCCCCeEEEecCCceEEEEEecccccceeeccccCCccccc-eeEEccCCCE-EeeccccccceeeeccCCc
Confidence            578899999999999987 556676665   2444444322  224466 8999999998 998765 4588888 455 


Q ss_pred             cEEEEeccC------CCcccCCccEEEcCCCcEEEEeCCCCCCcccccccccccCCCceEEEEeCCCCeeE---Eeeccc
Q 026118           81 VTVLVSQFN------GSQLRFANDVIEASDGSLYFTVSSTKFTPAEYYLDLVSGEPHGVLLKYDPSTNQTS---LVLDGL  151 (243)
Q Consensus        81 ~~~~~~~~~------~~~~~~~~~l~~d~~G~l~v~~~~~~~~~~~~~~~~~~~~~~g~v~~~~~~~~~~~---~~~~~~  151 (243)
                      .........      ......++++..+. +.+|+++..                 .+.|++++.+.....   ......
T Consensus       146 ~~~~~~~~~~~~~~~~~~~~~~ngi~~~~-~~l~~~~~~-----------------~~~i~~~~~~~~~~~~~~~~~~~~  207 (302)
T d2p4oa1         146 GSIWLEHPMLARSNSESVFPAANGLKRFG-NFLYVSNTE-----------------KMLLLRIPVDSTDKPGEPEIFVEQ  207 (302)
T ss_dssp             EEEEEECGGGSCSSTTCCSCSEEEEEEET-TEEEEEETT-----------------TTEEEEEEBCTTSCBCCCEEEEES
T ss_pred             ceeEecCCccceeeccCcccccccccccC-CceeeecCC-----------------CCeEEeccccccccccccccccCC
Confidence            333322111      11234567777664 568888654                 468999987643211   112335


Q ss_pred             cccceEEEcCCCCEEEEEEcCCCeEEEEEeecCCCcceEEecc--CCCCCCCceEEC---CCCC-EEEEEecC
Q 026118          152 YFANGVALSEDERFLVVCESWKFRCVKHFLKVSGRTDREIFID--NLPGGPDNVNLA---RDGS-FWISIIKM  218 (243)
Q Consensus       152 ~~~~gi~~~~dg~~l~v~~~~~~~i~~~~~~~~~~~~~~~~~~--~~~~~~~~i~~d---~~G~-lwv~~~~~  218 (243)
                      ..|.+|+++++|+ ||++...+++|.++++++.    ...+..  .....|.+++++   +|++ |||++..+
T Consensus       208 ~~pdgia~d~dG~-l~va~~~~~~V~~i~p~G~----~~~~~~~~~~~~~pt~vafg~~~~D~~~Lyvtt~~g  275 (302)
T d2p4oa1         208 TNIDDFAFDVEGN-LYGATHIYNSVVRIAPDRS----TTIIAQAEQGVIGSTAVAFGQTEGDCTAIYVVTNGG  275 (302)
T ss_dssp             CCCSSEEEBTTCC-EEEECBTTCCEEEECTTCC----EEEEECGGGTCTTEEEEEECCSTTTTTEEEEEECTT
T ss_pred             CCCcceEECCCCC-EEEEEcCCCcEEEECCCCC----EEEEEecCCCCCCceEEEEcCCCCCCCEEEEECCCC
Confidence            6789999999998 9999888899999987652    222222  122357889995   4555 99988764

>d2ghsa1 b.68.6.1 (A:20-314) Regucalcin {Agrobacterium tumefaciens [TaxId: 358]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: SGL-like
domain: Regucalcin
species: Agrobacterium tumefaciens [TaxId: 358]

Probab=99.41  E-value=7.6e-12  Score=98.35  Aligned_cols=143  Identities=17%  Similarity=0.183  Sum_probs=99.8

Q ss_pred             cCCcccEEEcCCCcEEEEeC-------CCcEEEEccCCceeEecccCCccccceEEccCCCEEEEEeCC-CcEEEEe-c-
Q 026118            9 VNHPEDVSVDGNGVLYTATG-------DGWIKRMHPNGTWEDWHQVGSQSLLGLTTTKENNVIIVCDSQ-QGLLKVS-E-   78 (243)
Q Consensus         9 ~~~p~~i~~d~~g~l~~~~~-------~~~i~~~~~~g~~~~~~~~~~~~~~~i~~~~~g~l~~v~~~~-~gl~~~~-~-   78 (243)
                      ...|..+.+|++|++|+++.       .+.++++. ++++.........++ +++++++++.+|+++.. +.|++++ . 
T Consensus       102 ~~~~nd~~vd~~G~iw~~~~~~~~~~~~g~l~~~~-~g~~~~~~~~~~~~N-g~~~s~d~~~l~~~dt~~~~I~~~~~d~  179 (295)
T d2ghsa1         102 GNRSNDGRMHPSGALWIGTMGRKAETGAGSIYHVA-KGKVTKLFADISIPN-SICFSPDGTTGYFVDTKVNRLMRVPLDA  179 (295)
T ss_dssp             TEEEEEEEECTTSCEEEEEEETTCCTTCEEEEEEE-TTEEEEEEEEESSEE-EEEECTTSCEEEEEETTTCEEEEEEBCT
T ss_pred             cccceeeEECCCCCEEEEeccccccccceeEeeec-CCcEEEEeeccCCcc-eeeecCCCceEEEeecccceeeEeeecc
Confidence            34678899999999999972       34567774 566665544445678 99999999866888765 4587776 2 


Q ss_pred             C-C-----cEEEEeccCCCcccCCccEEEcCCCcEEEEeCCCCCCcccccccccccCCCceEEEEeCCCCeeEEeecccc
Q 026118           79 E-G-----VTVLVSQFNGSQLRFANDVIEASDGSLYFTVSSTKFTPAEYYLDLVSGEPHGVLLKYDPSTNQTSLVLDGLY  152 (243)
Q Consensus        79 ~-g-----~~~~~~~~~~~~~~~~~~l~~d~~G~l~v~~~~~~~~~~~~~~~~~~~~~~g~v~~~~~~~~~~~~~~~~~~  152 (243)
                      + +     ...+.. ..+ ....|.++++|.+|+||++...                 .++|++|+|++..+..+.-...
T Consensus       180 ~~~~~~~~~~~~~~-~~~-~~g~pdG~~vD~~GnlWva~~~-----------------~g~V~~~dp~G~~~~~i~lP~~  240 (295)
T d2ghsa1         180 RTGLPTGKAEVFID-STG-IKGGMDGSVCDAEGHIWNARWG-----------------EGAVDRYDTDGNHIARYEVPGK  240 (295)
T ss_dssp             TTCCBSSCCEEEEE-CTT-SSSEEEEEEECTTSCEEEEEET-----------------TTEEEEECTTCCEEEEEECSCS
T ss_pred             cccccccceEEEec-cCc-ccccccceEEcCCCCEEeeeeC-----------------CCceEEecCCCcEeeEecCCCC
Confidence            2 1     122222 221 2346889999999999999532                 3589999998555555544445


Q ss_pred             ccceEEEc-CCCCEEEEEEcC
Q 026118          153 FANGVALS-EDERFLVVCESW  172 (243)
Q Consensus       153 ~~~gi~~~-~dg~~l~v~~~~  172 (243)
                      .|..++|- +|.+.|||+...
T Consensus       241 ~~T~~~FGG~d~~~LyvTta~  261 (295)
T d2ghsa1         241 QTTCPAFIGPDASRLLVTSAR  261 (295)
T ss_dssp             BEEEEEEESTTSCEEEEEEBC
T ss_pred             ceEEEEEeCCCCCEEEEEECC
Confidence            68889996 688899999653

>d1ijqa1 b.68.5.1 (A:377-642) Low density lipoprotein (LDL) receptor {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: YWTD domain
family: YWTD domain
domain: Low density lipoprotein (LDL) receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.39  E-value=1.2e-10  Score=90.05  Aligned_cols=154  Identities=15%  Similarity=0.147  Sum_probs=109.3

Q ss_pred             ccccCCcccEEEcC-CCcEEEEe-CCCcEEEEccCCceeEe--cccCCccccceEEccCCCEEEEEeCCC--cEEEEecC
Q 026118            6 EGIVNHPEDVSVDG-NGVLYTAT-GDGWIKRMHPNGTWEDW--HQVGSQSLLGLTTTKENNVIIVCDSQQ--GLLKVSEE   79 (243)
Q Consensus         6 ~g~~~~p~~i~~d~-~g~l~~~~-~~~~i~~~~~~g~~~~~--~~~~~~~~~~i~~~~~g~l~~v~~~~~--gl~~~~~~   79 (243)
                      ...+..|.+||+|. .++||+++ ..+.|.+.+.+|.....  ......|. +|++++...+||+++.+.  .|++.+.+
T Consensus        73 ~~~~~~p~glAvD~~~~~lY~~d~~~~~I~v~~~~g~~~~~~~~~~~~~P~-~l~vd~~~g~ly~~~~~~~~~I~r~~~d  151 (266)
T d1ijqa1          73 SRDIQAPDGLAVDWIHSNIYWTDSVLGTVSVADTKGVKRKTLFRENGSKPR-AIVVDPVHGFMYWTDWGTPAKIKKGGLN  151 (266)
T ss_dssp             CSSCSCCCEEEEETTTTEEEEEETTTTEEEEEETTSSSEEEEEECTTCCEE-EEEEETTTTEEEEEECSSSCEEEEEETT
T ss_pred             eCCCCCcceEEEeeccceEEEEecCCCEEEeEecCCceEEEEEcCCCCCcc-eEEEEcccCeEEEeccCCCcceeEeccC
Confidence            33478899999995 77899998 56788888877754322  22235678 999998554448877543  58888855


Q ss_pred             C--cEEEEeccCCCcccCCccEEEcCC-CcEEEEeCCCCCCcccccccccccCCCceEEEEeCCCCeeEEeec---cccc
Q 026118           80 G--VTVLVSQFNGSQLRFANDVIEASD-GSLYFTVSSTKFTPAEYYLDLVSGEPHGVLLKYDPSTNQTSLVLD---GLYF  153 (243)
Q Consensus        80 g--~~~~~~~~~~~~~~~~~~l~~d~~-G~l~v~~~~~~~~~~~~~~~~~~~~~~g~v~~~~~~~~~~~~~~~---~~~~  153 (243)
                      |  .+.+..    .....|++|++|+. ++||+++..                 .+.|.+++.++...+.+..   ....
T Consensus       152 Gs~~~~l~~----~~~~~p~gl~iD~~~~~lYw~d~~-----------------~~~I~~~~~dG~~~~~~~~~~~~~~~  210 (266)
T d1ijqa1         152 GVDIYSLVT----ENIQWPNGITLDLLSGRLYWVDSK-----------------LHSISSIDVNGGNRKTILEDEKRLAH  210 (266)
T ss_dssp             SCCEEEEEC----SSCSCEEEEEEETTTTEEEEEETT-----------------TTEEEEEETTSCSCEEEEECTTTTSS
T ss_pred             CCceecccc----cccceeeEEEeeccccEEEEecCC-----------------cCEEEEEECCCCCEEEEEeCCCcccc
Confidence            5  444432    12356889999985 579999754                 3589999998655444432   2456


Q ss_pred             cceEEEcCCCCEEEEEEcCCCeEEEEEeec
Q 026118          154 ANGVALSEDERFLVVCESWKFRCVKHFLKV  183 (243)
Q Consensus       154 ~~gi~~~~dg~~l~v~~~~~~~i~~~~~~~  183 (243)
                      |.+|+++  +++|||++..+++|++++..+
T Consensus       211 p~~lav~--~~~ly~td~~~~~I~~~~~~~  238 (266)
T d1ijqa1         211 PFSLAVF--EDKVFWTDIINEAIFSANRLT  238 (266)
T ss_dssp             EEEEEEE--TTEEEEEETTTTEEEEEETTT
T ss_pred             cEEEEEE--CCEEEEEECCCCeEEEEECCC
Confidence            7888887  346999999999999998654

>d1jofa_ b.69.10.1 (A:) 3-carboxy-cis,cis-mucoante lactonizing enzyme {Neurospora crassa [TaxId: 5141]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: 3-carboxy-cis,cis-mucoante lactonizing enzyme
family: 3-carboxy-cis,cis-mucoante lactonizing enzyme
domain: 3-carboxy-cis,cis-mucoante lactonizing enzyme
species: Neurospora crassa [TaxId: 5141]

Probab=99.19  E-value=3.4e-09  Score=85.32  Aligned_cols=187  Identities=13%  Similarity=0.037  Sum_probs=111.1

Q ss_pred             CcccEEEcCCC-cEEEEeCCCcE--EEEccCCceeEe--cccCCccccceEEccCCCEEEEEeCC--C-cEEEEe--cCC
Q 026118           11 HPEDVSVDGNG-VLYTATGDGWI--KRMHPNGTWEDW--HQVGSQSLLGLTTTKENNVIIVCDSQ--Q-GLLKVS--EEG   80 (243)
Q Consensus        11 ~p~~i~~d~~g-~l~~~~~~~~i--~~~~~~g~~~~~--~~~~~~~~~~i~~~~~g~l~~v~~~~--~-gl~~~~--~~g   80 (243)
                      .|..|++++++ .||++.. +.+  +.+++++.....  ......|. .++++++++.+|++...  . .+..+.  ..+
T Consensus        41 ~~s~la~s~d~~~ly~~~~-~~~~~~~i~~~~~~~~~~~~~~~~~p~-~v~~~~~~~~~~v~~a~~~~~~v~~~~~~~~~  118 (365)
T d1jofa_          41 PISWMTFDHERKNIYGAAM-KKWSSFAVKSPTEIVHEASHPIGGHPR-ANDADTNTRAIFLLAAKQPPYAVYANPFYKFA  118 (365)
T ss_dssp             CCSEEEECTTSSEEEEEEB-TEEEEEEEEETTEEEEEEEEECCSSGG-GGCTTSCCEEEEEEECSSTTCCEEEEEESSSC
T ss_pred             CCCEEEEcCCCCEEEEEeC-CcEEEEEEeCCCCeEEEeeecCCCCcE-EEEECCCCCEEEEEEecCCCCEEEEeEccCCC
Confidence            46779999888 4787764 345  444455544332  12345677 89999999866776532  1 233322  221


Q ss_pred             --cEEE-----------EeccCCCcccCCccEEEcCCCc-EEEEeCCCCCCcccccccccccCCCceEEEE--eCCCCee
Q 026118           81 --VTVL-----------VSQFNGSQLRFANDVIEASDGS-LYFTVSSTKFTPAEYYLDLVSGEPHGVLLKY--DPSTNQT  144 (243)
Q Consensus        81 --~~~~-----------~~~~~~~~~~~~~~l~~d~~G~-l~v~~~~~~~~~~~~~~~~~~~~~~g~v~~~--~~~~~~~  144 (243)
                        ...+           .....-+...++.+++++|||+ +|+++.+                 ...|+.+  +.. +.+
T Consensus       119 ~~~~~~~~~~~~~~~~~~~~~~~q~~~h~h~v~~sPdG~~l~v~d~g-----------------~d~v~~~~~~~~-g~~  180 (365)
T d1jofa_         119 GYGNVFSVSETGKLEKNVQNYEYQENTGIHGMVFDPTETYLYSADLT-----------------ANKLWTHRKLAS-GEV  180 (365)
T ss_dssp             CEEEEEEECTTCCEEEEEEEEECCTTCCEEEEEECTTSSEEEEEETT-----------------TTEEEEEEECTT-SCE
T ss_pred             CcceeEeeeecceecCcccCcccCCCCcceEEEECCCCCEEEEeeCC-----------------CCEEEEEEccCC-Cce
Confidence              1111           1111111234677999999997 7777643                 2355554  443 443


Q ss_pred             EEe-----eccccccceEEEcCCCCEEEEEEcCCCeEEEEEeecCCCcceEE---eccCC-------------CCCCCce
Q 026118          145 SLV-----LDGLYFANGVALSEDERFLVVCESWKFRCVKHFLKVSGRTDREI---FIDNL-------------PGGPDNV  203 (243)
Q Consensus       145 ~~~-----~~~~~~~~gi~~~~dg~~l~v~~~~~~~i~~~~~~~~~~~~~~~---~~~~~-------------~~~~~~i  203 (243)
                      ...     ......|..++|+|+++++|++...++.|..|+.+.........   ..-..             ...+..|
T Consensus       181 ~~~~~~~~~~~g~gPr~i~f~pdg~~~yv~~e~~~~V~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i  260 (365)
T d1jofa_         181 ELVGSVDAPDPGDHPRWVAMHPTGNYLYALMEAGNRICEYVIDPATHMPVYTHHSFPLIPPGIPDRDPETGKGLYRADVC  260 (365)
T ss_dssp             EEEEEEECSSTTCCEEEEEECTTSSEEEEEETTTTEEEEEEECTTTCCEEEEEEEEESSCTTCCCBCTTTSSBSEEEEEE
T ss_pred             eeccceeecCCCCceEEEEECCCCceEEEeccCCCEEEEEEecCCCceEEEEeeeeccccccccccccccccccCCccce
Confidence            322     12245788999999999999999999999999987643322111   10000             0124568


Q ss_pred             EECCCCC-EEEEEec
Q 026118          204 NLARDGS-FWISIIK  217 (243)
Q Consensus       204 ~~d~~G~-lwv~~~~  217 (243)
                      +++++|+ ||++...
T Consensus       261 ~~spdG~~lyvsnr~  275 (365)
T d1jofa_         261 ALTFSGKYMFASSRA  275 (365)
T ss_dssp             EECTTSSEEEEEEEE
T ss_pred             EECCCCCEEEEEccc
Confidence            9999998 7887653

>d1l0qa2 b.69.2.3 (A:1-301) Surface layer protein {Archaeon Methanosarcina mazei [TaxId: 2209]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: YVTN repeat
domain: Surface layer protein
species: Archaeon Methanosarcina mazei [TaxId: 2209]

Probab=99.18  E-value=1.2e-08  Score=78.39  Aligned_cols=183  Identities=11%  Similarity=0.145  Sum_probs=119.0

Q ss_pred             CCcccEEEcCCCc-EEEEe-CCCcEEEEc-cCCceeEecccCCccccceEEccCCCEEEEEeCCCc-EEEEe-cCC-cEE
Q 026118           10 NHPEDVSVDGNGV-LYTAT-GDGWIKRMH-PNGTWEDWHQVGSQSLLGLTTTKENNVIIVCDSQQG-LLKVS-EEG-VTV   83 (243)
Q Consensus        10 ~~p~~i~~d~~g~-l~~~~-~~~~i~~~~-~~g~~~~~~~~~~~~~~~i~~~~~g~l~~v~~~~~g-l~~~~-~~g-~~~   83 (243)
                      ..|.++++++||. ||++. .++.|..+| .+++..........+. +++++++++.++++..... +..++ .++ ...
T Consensus        32 ~~p~~va~spdG~~l~v~~~~~~~i~v~d~~t~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  110 (301)
T d1l0qa2          32 SNPMGAVISPDGTKVYVANAHSNDVSIIDTATNNVIATVPAGSSPQ-GVAVSPDGKQVYVTNMASSTLSVIDTTSNTVAG  110 (301)
T ss_dssp             SSEEEEEECTTSSEEEEEEGGGTEEEEEETTTTEEEEEEECSSSEE-EEEECTTSSEEEEEETTTTEEEEEETTTTEEEE
T ss_pred             CCceEEEEeCCCCEEEEEECCCCEEEEEECCCCceeeeeecccccc-ccccccccccccccccccceeeecccccceeee
Confidence            4699999999985 78776 678899999 4555433323334567 8999999987577665544 44555 444 222


Q ss_pred             EEeccCCCcccCCccEEEcCCCcEEEEeCCCCCCcccccccccccCCCceEEEEeCCCCeeEEeeccccccceEEEcCCC
Q 026118           84 LVSQFNGSQLRFANDVIEASDGSLYFTVSSTKFTPAEYYLDLVSGEPHGVLLKYDPSTNQTSLVLDGLYFANGVALSEDE  163 (243)
Q Consensus        84 ~~~~~~~~~~~~~~~l~~d~~G~l~v~~~~~~~~~~~~~~~~~~~~~~g~v~~~~~~~~~~~~~~~~~~~~~gi~~~~dg  163 (243)
                      ....     ...+..++++++|+.++....                ....+..++..+.+..........+..+++++++
T Consensus       111 ~~~~-----~~~~~~~~~~~dg~~~~~~~~----------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  169 (301)
T d1l0qa2         111 TVKT-----GKSPLGLALSPDGKKLYVTNN----------------GDKTVSVINTVTKAVINTVSVGRSPKGIAVTPDG  169 (301)
T ss_dssp             EEEC-----SSSEEEEEECTTSSEEEEEET----------------TTTEEEEEETTTTEEEEEEECCSSEEEEEECTTS
T ss_pred             eccc-----cccceEEEeecCCCeeeeeec----------------cccceeeeeccccceeeecccCCCceEEEeeccc
Confidence            2211     234567889999975543211                2346777888877766655556678889999999


Q ss_pred             CEEEEEEcCCCeEEEEEeecCCCcceEEeccCCCCCCCceEECCCCC-EEEEEecC
Q 026118          164 RFLVVCESWKFRCVKHFLKVSGRTDREIFIDNLPGGPDNVNLARDGS-FWISIIKM  218 (243)
Q Consensus       164 ~~l~v~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~i~~d~~G~-lwv~~~~~  218 (243)
                      +.+|++......+..+.....  ......  .....|.+++++++|+ +|++....
T Consensus       170 ~~~~~~~~~~~~~~~~~~~~~--~~~~~~--~~~~~~~~~~~~~~g~~~~v~~~~~  221 (301)
T d1l0qa2         170 TKVYVANFDSMSISVIDTVTN--SVIDTV--KVEAAPSGIAVNPEGTKAYVTNVDK  221 (301)
T ss_dssp             SEEEEEETTTTEEEEEETTTT--EEEEEE--ECSSEEEEEEECTTSSEEEEEEECS
T ss_pred             cceeeecccccccccccccce--eeeecc--cccCCcceeeccccccccccccccc
Confidence            999999876666666554332  111121  2234577889998887 66665443

>d1l0qa2 b.69.2.3 (A:1-301) Surface layer protein {Archaeon Methanosarcina mazei [TaxId: 2209]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: YVTN repeat
domain: Surface layer protein
species: Archaeon Methanosarcina mazei [TaxId: 2209]

Probab=99.17  E-value=7.1e-09  Score=79.79  Aligned_cols=169  Identities=15%  Similarity=0.179  Sum_probs=113.2

Q ss_pred             cEEEEe-CCCcEEEEc-cCCceeEecccCCccccceEEccCCCEEEEEeCC-CcEEEEe-cCC-c-EEEEeccCCCcccC
Q 026118           22 VLYTAT-GDGWIKRMH-PNGTWEDWHQVGSQSLLGLTTTKENNVIIVCDSQ-QGLLKVS-EEG-V-TVLVSQFNGSQLRF   95 (243)
Q Consensus        22 ~l~~~~-~~~~i~~~~-~~g~~~~~~~~~~~~~~~i~~~~~g~l~~v~~~~-~gl~~~~-~~g-~-~~~~~~~~~~~~~~   95 (243)
                      .+|++. .++.|..+| .++++.........|. ++++++||+.||++... +.|..+| .++ . ..+..      ...
T Consensus         3 ~~yV~~~~~~~v~v~D~~t~~~~~~i~~g~~p~-~va~spdG~~l~v~~~~~~~i~v~d~~t~~~~~~~~~------~~~   75 (301)
T d1l0qa2           3 FAYIANSESDNISVIDVTSNKVTATIPVGSNPM-GAVISPDGTKVYVANAHSNDVSIIDTATNNVIATVPA------GSS   75 (301)
T ss_dssp             EEEEEETTTTEEEEEETTTTEEEEEEECSSSEE-EEEECTTSSEEEEEEGGGTEEEEEETTTTEEEEEEEC------SSS
T ss_pred             EEEEEECCCCEEEEEECCCCeEEEEEECCCCce-EEEEeCCCCEEEEEECCCCEEEEEECCCCceeeeeec------ccc
Confidence            478876 678899999 5666554334345678 99999999976887754 4588888 566 2 22221      235


Q ss_pred             CccEEEcCCCcEEEEeCCCCCCcccccccccccCCCceEEEEeCCCCeeEEeeccccccceEEEcCCCCEEEEEEcCCCe
Q 026118           96 ANDVIEASDGSLYFTVSSTKFTPAEYYLDLVSGEPHGVLLKYDPSTNQTSLVLDGLYFANGVALSEDERFLVVCESWKFR  175 (243)
Q Consensus        96 ~~~l~~d~~G~l~v~~~~~~~~~~~~~~~~~~~~~~g~v~~~~~~~~~~~~~~~~~~~~~gi~~~~dg~~l~v~~~~~~~  175 (243)
                      +.+++++++|..++....                ....+..++..+++..........+..++++++|+.++++...+..
T Consensus        76 ~~~~~~~~~~~~~~~~~~----------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dg~~~~~~~~~~~~  139 (301)
T d1l0qa2          76 PQGVAVSPDGKQVYVTNM----------------ASSTLSVIDTTSNTVAGTVKTGKSPLGLALSPDGKKLYVTNNGDKT  139 (301)
T ss_dssp             EEEEEECTTSSEEEEEET----------------TTTEEEEEETTTTEEEEEEECSSSEEEEEECTTSSEEEEEETTTTE
T ss_pred             cccccccccccccccccc----------------ccceeeecccccceeeeeccccccceEEEeecCCCeeeeeeccccc
Confidence            678899999875443211                2346777888877766665556677889999999988888877777


Q ss_pred             EEEEEeecCCCcceEEeccCCCCCCCceEECCCCC-EEEEEec
Q 026118          176 CVKHFLKVSGRTDREIFIDNLPGGPDNVNLARDGS-FWISIIK  217 (243)
Q Consensus       176 i~~~~~~~~~~~~~~~~~~~~~~~~~~i~~d~~G~-lwv~~~~  217 (243)
                      +..++....  .....+  .....|..+++.++++ +|++...
T Consensus       140 ~~~~~~~~~--~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~  178 (301)
T d1l0qa2         140 VSVINTVTK--AVINTV--SVGRSPKGIAVTPDGTKVYVANFD  178 (301)
T ss_dssp             EEEEETTTT--EEEEEE--ECCSSEEEEEECTTSSEEEEEETT
T ss_pred             eeeeecccc--ceeeec--ccCCCceEEEeeccccceeeeccc
Confidence            877775432  112222  1233467788888876 6666544

>d1qksa2 b.70.2.1 (A:136-567) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
family: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
domain: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
species: Paracoccus denitrificans [TaxId: 266]

Probab=99.17  E-value=8.3e-10  Score=91.00  Aligned_cols=177  Identities=8%  Similarity=-0.082  Sum_probs=111.2

Q ss_pred             cEEEEe-CCCcEEEEc-cCCceeEecccCCccccceEEccCCCEEEEEeCCCcEEEEe-cCC-cEEEEeccCCCc-ccCC
Q 026118           22 VLYTAT-GDGWIKRMH-PNGTWEDWHQVGSQSLLGLTTTKENNVIIVCDSQQGLLKVS-EEG-VTVLVSQFNGSQ-LRFA   96 (243)
Q Consensus        22 ~l~~~~-~~~~i~~~~-~~g~~~~~~~~~~~~~~~i~~~~~g~l~~v~~~~~gl~~~~-~~g-~~~~~~~~~~~~-~~~~   96 (243)
                      .++++. .++.|..+| ..+++.........+. +++|+|||+++|+++..+.+..+| .++ .........+.. ....
T Consensus        33 ~~~v~~~d~g~v~v~D~~t~~v~~~~~~g~~~~-~v~fSpDG~~l~~~s~dg~v~~~d~~t~~~~~~~~i~~~~~~~~~~  111 (432)
T d1qksa2          33 LFSVTLRDAGQIALIDGSTYEIKTVLDTGYAVH-ISRLSASGRYLFVIGRDGKVNMIDLWMKEPTTVAEIKIGSEARSIE  111 (432)
T ss_dssp             EEEEEETTTTEEEEEETTTCCEEEEEECSSCEE-EEEECTTSCEEEEEETTSEEEEEETTSSSCCEEEEEECCSEEEEEE
T ss_pred             EEEEEEcCCCEEEEEECCCCcEEEEEeCCCCee-EEEECCCCCEEEEEcCCCCEEEEEeeCCCceEEEEEecCCCCCCeE
Confidence            344555 778999999 4566554433334577 999999999988888666788888 555 332222111111 1112


Q ss_pred             ccEEEcCCCc-EEEEeCCCCCCcccccccccccCCCceEEEEeCCCCeeEEeecc------------ccccceEEEcCCC
Q 026118           97 NDVIEASDGS-LYFTVSSTKFTPAEYYLDLVSGEPHGVLLKYDPSTNQTSLVLDG------------LYFANGVALSEDE  163 (243)
Q Consensus        97 ~~l~~d~~G~-l~v~~~~~~~~~~~~~~~~~~~~~~g~v~~~~~~~~~~~~~~~~------------~~~~~gi~~~~dg  163 (243)
                      .+++++|||+ +|++...                 .+.|..+|.++++.......            .....+++++++|
T Consensus       112 ~s~~~SpDG~~l~vs~~~-----------------~~~v~i~d~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~s~dg  174 (432)
T d1qksa2         112 TSKMEGWEDKYAIAGAYW-----------------PPQYVIMDGETLEPKKIQSTRGMTYDEQEYHPEPRVAAILASHYR  174 (432)
T ss_dssp             ECCSTTCTTTEEEEEEEE-----------------TTEEEEEETTTCCEEEEEECCEECTTTCCEESCCCEEEEEECSSS
T ss_pred             EecccCCCCCEEEEEcCC-----------------CCeEEEEeCccccceeeeccCCccccceeccCCCceeEEEECCCC
Confidence            2223457897 5666422                 35688889888776543211            1233568899999


Q ss_pred             CEEEEEEcCCCeEEEEEeecCCCcceEEeccCCCCCCCceEECCCCC-EEEEEecC
Q 026118          164 RFLVVCESWKFRCVKHFLKVSGRTDREIFIDNLPGGPDNVNLARDGS-FWISIIKM  218 (243)
Q Consensus       164 ~~l~v~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~i~~d~~G~-lwv~~~~~  218 (243)
                      +.++++....+.|..++..+........+  .....|.+++++++|+ ++++....
T Consensus       175 ~~~~vs~~~~~~i~~~d~~~~~~~~~~~i--~~g~~~~~~~~spdg~~~~va~~~~  228 (432)
T d1qksa2         175 PEFIVNVKETGKILLVDYTDLNNLKTTEI--SAERFLHDGGLDGSHRYFITAANAR  228 (432)
T ss_dssp             SEEEEEETTTTEEEEEETTCSSEEEEEEE--ECCSSEEEEEECTTSCEEEEEEGGG
T ss_pred             CEEEEEEccCCeEEEEEccCCCcceEEEE--cccCccccceECCCCCEEEEecccc
Confidence            98899988889999998764322222222  2234688999999998 56655443

>d1ri6a_ b.69.11.1 (A:) Putative isomerase YbhE {Escherichia coli [TaxId: 562]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Putative isomerase YbhE
family: Putative isomerase YbhE
domain: Putative isomerase YbhE
species: Escherichia coli [TaxId: 562]

Probab=99.15  E-value=1.4e-08  Score=79.24  Aligned_cols=203  Identities=13%  Similarity=0.154  Sum_probs=108.6

Q ss_pred             CCcccEEEcCCCc-EEEEe-CCCcEEEEc--cCC-ceeEe--cccCCccccceEEccCCCEEEEEeCCCc-EEEEe-cCC
Q 026118           10 NHPEDVSVDGNGV-LYTAT-GDGWIKRMH--PNG-TWEDW--HQVGSQSLLGLTTTKENNVIIVCDSQQG-LLKVS-EEG   80 (243)
Q Consensus        10 ~~p~~i~~d~~g~-l~~~~-~~~~i~~~~--~~g-~~~~~--~~~~~~~~~~i~~~~~g~l~~v~~~~~g-l~~~~-~~g   80 (243)
                      ..|.+|++++||+ ||++. .++.|..++  ..+ ..+..  ......|. ++++++||+.|+++....+ +..++ ...
T Consensus        37 ~~v~~la~spDG~~L~v~~~~d~~i~~~~i~~~~~~~~~~~~~~~~~~p~-~l~~spDg~~l~v~~~~~~~v~~~~~~~~  115 (333)
T d1ri6a_          37 GQVQPMVVSPDKRYLYVGVRPEFRVLAYRIAPDDGALTFAAESALPGSLT-HISTDHQGQFVFVGSYNAGNVSVTRLEDG  115 (333)
T ss_dssp             SCCCCEEECTTSSEEEEEETTTTEEEEEEECTTTCCEEEEEEEECSSCCS-EEEECTTSSEEEEEETTTTEEEEEEEETT
T ss_pred             CCEeEEEEeCCCCEEEEEECCCCeEEEEEEeCCCCcEEEeeecccCCCce-EEEEcCCCCEEeecccCCCceeeeccccc
Confidence            4688999999995 88887 467776665  333 22221  22234577 8999999998788886554 44444 333


Q ss_pred             -cEEEEeccCCCcccCCccEEEcCCCc-EEEEeCCCCCCcccccc-----------------------cccccCCCceEE
Q 026118           81 -VTVLVSQFNGSQLRFANDVIEASDGS-LYFTVSSTKFTPAEYYL-----------------------DLVSGEPHGVLL  135 (243)
Q Consensus        81 -~~~~~~~~~~~~~~~~~~l~~d~~G~-l~v~~~~~~~~~~~~~~-----------------------~~~~~~~~g~v~  135 (243)
                       .........  ....+.++.++++++ +++++.... .+..+..                       .+........++
T Consensus       116 ~~~~~~~~~~--~~~~~~~v~~s~d~~~~~~~~~~~~-~i~~~~~~~~~~~~~~~~~~~~~~~g~~p~~i~~~~~~~~~~  192 (333)
T d1ri6a_         116 LPVGVVDVVE--GLDGCHSANISPDNRTLWVPALKQD-RICLFTVSDDGHLVAQDPAEVTTVEGAGPRHMVFHPNEQYAY  192 (333)
T ss_dssp             EEEEEEEEEC--CCTTBCCCEECTTSSEEEEEEGGGT-EEEEEEECTTSCEEEEEEEEEECSTTCCEEEEEECTTSSEEE
T ss_pred             cceecccccC--CCccceEEEeeecceeeeccccccc-eeeEEEeccCCcceeeeceeeeeecCCCccEEEEeccceeEE
Confidence             222221111  123456778888876 333332110 0000000                       000000011111


Q ss_pred             ------------EEeCCCCeeEEee---------ccccccceEEEcCCCCEEEEEEcCCCeEEEEEeecCC-CcceEEec
Q 026118          136 ------------KYDPSTNQTSLVL---------DGLYFANGVALSEDERFLVVCESWKFRCVKHFLKVSG-RTDREIFI  193 (243)
Q Consensus       136 ------------~~~~~~~~~~~~~---------~~~~~~~gi~~~~dg~~l~v~~~~~~~i~~~~~~~~~-~~~~~~~~  193 (243)
                                  .++.....+....         .....+..++++++++++|++....+.+..|..+... ........
T Consensus       193 ~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  272 (333)
T d1ri6a_         193 CVNELNSSVDVWELKDPHGNIECVQTLDMMPENFSDTRWAADIHITPDGRHLYACDRTASLITVFSVSEDGSVLSKEGFQ  272 (333)
T ss_dssp             EEETTTTEEEEEESSCTTSCCEEEEEEECSCTTCCSCCCEEEEEECTTSSEEEEEETTTTEEEEEEECTTSCCEEEEEEE
T ss_pred             eeccccCceEEEeecccccceeeeeeeeeeecCCCccccceeEEEecccCceeeecccCCeEEEEEEcCCCCEEEEEEEe
Confidence                        1111111111100         0123356788999999999998888888888776432 21212111


Q ss_pred             cCCCCCCCceEECCCCC-EEEEEec
Q 026118          194 DNLPGGPDNVNLARDGS-FWISIIK  217 (243)
Q Consensus       194 ~~~~~~~~~i~~d~~G~-lwv~~~~  217 (243)
                       .....|.++++++||+ ||++...
T Consensus       273 -~~~~~p~~~a~spDGk~l~va~~~  296 (333)
T d1ri6a_         273 -PTETQPRGFNVDHSGKYLIAAGQK  296 (333)
T ss_dssp             -ECSSSCCCEEECTTSSEEEEECTT
T ss_pred             -CCCCCeeEEEEeCCCCEEEEEECC
Confidence             2335689999999999 6776543

>d1crua_ b.68.2.1 (A:) Soluble quinoprotein glucose dehydrogenase {Acinetobacter calcoaceticus [TaxId: 471]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Soluble quinoprotein glucose dehydrogenase
family: Soluble quinoprotein glucose dehydrogenase
domain: Soluble quinoprotein glucose dehydrogenase
species: Acinetobacter calcoaceticus [TaxId: 471]

Probab=99.15  E-value=1.4e-08  Score=83.85  Aligned_cols=167  Identities=14%  Similarity=0.201  Sum_probs=99.2

Q ss_pred             ceecccccCCcccEEEcCCCcEEEEeC-CCcEEEEc-cCCceeEecccC---------CccccceEEccC----CCEEEE
Q 026118            2 IKLGEGIVNHPEDVSVDGNGVLYTATG-DGWIKRMH-PNGTWEDWHQVG---------SQSLLGLTTTKE----NNVIIV   66 (243)
Q Consensus         2 ~~~~~g~~~~p~~i~~d~~g~l~~~~~-~~~i~~~~-~~g~~~~~~~~~---------~~~~~~i~~~~~----g~l~~v   66 (243)
                      +.++++ +..|.+|++.++|+||++.. .|+|++++ .+++.+.+....         +--. +|+++|+    +.+ |+
T Consensus        20 ~~ia~~-L~~P~~la~~pdg~llVter~~G~i~~v~~~~g~~~~i~~~~~~~~~~~ge~GLL-gia~~Pdf~~n~~i-Yv   96 (450)
T d1crua_          20 KVILSN-LNKPHALLWGPDNQIWLTERATGKILRVNPESGSVKTVFQVPEIVNDADGQNGLL-GFAFHPDFKNNPYI-YI   96 (450)
T ss_dssp             EEEECC-CSSEEEEEECTTSCEEEEETTTCEEEEECTTTCCEEEEEECTTCCCCTTSSCSEE-EEEECTTTTTSCEE-EE
T ss_pred             EEEECC-CCCceEEEEeCCCeEEEEEecCCEEEEEECCCCcEeecccCCccccccCCCCcee-eEEeCCCCccCCEE-EE
Confidence            567777 99999999999999999995 68999998 455544432111         1123 7888864    444 77


Q ss_pred             EeC---------C--C--cEEEEe-c-CC--c---EEEEeccCCCcccCCccEEEcCCCcEEEEeCCCCCCcccc-----
Q 026118           67 CDS---------Q--Q--GLLKVS-E-EG--V---TVLVSQFNGSQLRFANDVIEASDGSLYFTVSSTKFTPAEY-----  121 (243)
Q Consensus        67 ~~~---------~--~--gl~~~~-~-~g--~---~~~~~~~~~~~~~~~~~l~~d~~G~l~v~~~~~~~~~~~~-----  121 (243)
                      +-.         .  .  -+.++. . +.  .   +.+..............|++++||.||++.-.........     
T Consensus        97 syt~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~i~~~~p~~~~H~gg~l~fgpDG~LYvs~Gd~~~~~~~~~~~~~  176 (450)
T d1crua_          97 SGTFKNPKSTDKELPNQTIIRRYTYNKSTDTLEKPVDLLAGLPSSKDHQSGRLVIGPDQKIYYTIGDQGRNQLAYLFLPN  176 (450)
T ss_dssp             EEEEECTTC--CCSCEEEEEEEEEEETTTTEEEEEEEEEEEECCCSSCCEEEEEECTTSCEEEEECCTTTTSGGGTTSCC
T ss_pred             EEecCCCCCcccccccceEEEeeecccccccccceEEEeecccccccccccceeEcCCCCEEEEecCCCccccccccccc
Confidence            531         0  0  133333 2 22  1   1122222222223456799999999999864321110000     


Q ss_pred             -------c---ccccccCCCceEEEEeCCCCee-----------EEeeccccccceEEEcCCCCEEEEEEcC
Q 026118          122 -------Y---LDLVSGEPHGVLLKYDPSTNQT-----------SLVLDGLYFANGVALSEDERFLVVCESW  172 (243)
Q Consensus       122 -------~---~~~~~~~~~g~v~~~~~~~~~~-----------~~~~~~~~~~~gi~~~~dg~~l~v~~~~  172 (243)
                             .   .........|+|+|+++++...           +..+.++..|.+++|+++|+ ||+++.+
T Consensus       177 ~~~~~~~~~~~~~q~~~~~~Gkilri~~dg~~~~dnP~~~~~~~ei~a~G~RNp~g~~~~p~g~-l~~~e~G  247 (450)
T d1crua_         177 QAQHTPTQQELNGKDYHTYMGKVLRLNLDGSIPKDNPSFNGVVSHIYTLGHRNPQGLAFTPNGK-LLQSEQG  247 (450)
T ss_dssp             CTTCCCCHHHHHTTCCTTCSSEEEEECTTSCCCTTCCEETTEECSEEEBCCSEEEEEEECTTSC-EEEEEEC
T ss_pred             ccccCcccccccccccccccCceEEeeccccccccccccccccceEEEeccccccceeecccce-eeecccc
Confidence                   0   0011123458899999874321           33566777889999999888 8988653

>d1jofa_ b.69.10.1 (A:) 3-carboxy-cis,cis-mucoante lactonizing enzyme {Neurospora crassa [TaxId: 5141]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: 3-carboxy-cis,cis-mucoante lactonizing enzyme
family: 3-carboxy-cis,cis-mucoante lactonizing enzyme
domain: 3-carboxy-cis,cis-mucoante lactonizing enzyme
species: Neurospora crassa [TaxId: 5141]

Probab=99.11  E-value=1e-08  Score=82.52  Aligned_cols=191  Identities=15%  Similarity=0.104  Sum_probs=108.6

Q ss_pred             CCcccEEEcCCCc-EEEEe---CCCcEEEEc--c------------CCceeEe----c-ccCCccccceEEccCCCEEEE
Q 026118           10 NHPEDVSVDGNGV-LYTAT---GDGWIKRMH--P------------NGTWEDW----H-QVGSQSLLGLTTTKENNVIIV   66 (243)
Q Consensus        10 ~~p~~i~~d~~g~-l~~~~---~~~~i~~~~--~------------~g~~~~~----~-~~~~~~~~~i~~~~~g~l~~v   66 (243)
                      ..|..+++++++. +|+..   ..+.++.+.  .            .++....    . .....+. +++++|+|+++|+
T Consensus        83 ~~p~~v~~~~~~~~~~v~~a~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~~~h~h-~v~~sPdG~~l~v  161 (365)
T d1jofa_          83 GHPRANDADTNTRAIFLLAAKQPPYAVYANPFYKFAGYGNVFSVSETGKLEKNVQNYEYQENTGIH-GMVFDPTETYLYS  161 (365)
T ss_dssp             SSGGGGCTTSCCEEEEEEECSSTTCCEEEEEESSSCCEEEEEEECTTCCEEEEEEEEECCTTCCEE-EEEECTTSSEEEE
T ss_pred             CCcEEEEECCCCCEEEEEEecCCCCEEEEeEccCCCCcceeEeeeecceecCcccCcccCCCCcce-EEEECCCCCEEEE
Confidence            4688899998884 67654   234444332  1            1211111    0 1112456 8999999998799


Q ss_pred             EeCCC-cEEEEe--cCC-cEEEEeccCCCcccCCccEEEcCCCc-EEEEeCCCCCCcccccccccccCCCceEEEEeCCC
Q 026118           67 CDSQQ-GLLKVS--EEG-VTVLVSQFNGSQLRFANDVIEASDGS-LYFTVSSTKFTPAEYYLDLVSGEPHGVLLKYDPST  141 (243)
Q Consensus        67 ~~~~~-gl~~~~--~~g-~~~~~~~~~~~~~~~~~~l~~d~~G~-l~v~~~~~~~~~~~~~~~~~~~~~~g~v~~~~~~~  141 (243)
                      ++.+. .|+.++  .++ ...............|.+++++|+|+ +|+++.                 ..+.|..|+.+.
T Consensus       162 ~d~g~d~v~~~~~~~~g~~~~~~~~~~~~~g~gPr~i~f~pdg~~~yv~~e-----------------~~~~V~v~~~~~  224 (365)
T d1jofa_         162 ADLTANKLWTHRKLASGEVELVGSVDAPDPGDHPRWVAMHPTGNYLYALME-----------------AGNRICEYVIDP  224 (365)
T ss_dssp             EETTTTEEEEEEECTTSCEEEEEEEECSSTTCCEEEEEECTTSSEEEEEET-----------------TTTEEEEEEECT
T ss_pred             eeCCCCEEEEEEccCCCceeeccceeecCCCCceEEEEECCCCceEEEecc-----------------CCCEEEEEEecC
Confidence            98654 466665  445 33332222222345788999999997 556542                 234555544433


Q ss_pred             CeeE---Ee-----ec------------cccccceEEEcCCCCEEEEEEcCCCe-----EEEEEeecC-CCcceEEecc-
Q 026118          142 NQTS---LV-----LD------------GLYFANGVALSEDERFLVVCESWKFR-----CVKHFLKVS-GRTDREIFID-  194 (243)
Q Consensus       142 ~~~~---~~-----~~------------~~~~~~gi~~~~dg~~l~v~~~~~~~-----i~~~~~~~~-~~~~~~~~~~-  194 (243)
                      +...   ..     ..            ....+..|+++|||++||+++...+.     |..++.+.. .+.....+.. 
T Consensus       225 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~spdG~~lyvsnr~~~~~~~~~i~~~~~~~~g~~~~~~~~~~~  304 (365)
T d1jofa_         225 ATHMPVYTHHSFPLIPPGIPDRDPETGKGLYRADVCALTFSGKYMFASSRANKFELQGYIAGFKLRDCGSIEKQLFLSPT  304 (365)
T ss_dssp             TTCCEEEEEEEEESSCTTCCCBCTTTSSBSEEEEEEEECTTSSEEEEEEEESSTTSCCEEEEEEECTTSCEEEEEEEEEC
T ss_pred             CCceEEEEeeeeccccccccccccccccccCCccceEECCCCCEEEEEcccCCCccceEEEEEEecCCCceeeEeEeeEE
Confidence            2211   11     00            01235679999999999999765443     777776532 2222212111 


Q ss_pred             -CCCCCCCceEECC-CCC-EEEEEecC
Q 026118          195 -NLPGGPDNVNLAR-DGS-FWISIIKM  218 (243)
Q Consensus       195 -~~~~~~~~i~~d~-~G~-lwv~~~~~  218 (243)
                       .....|.+|++++ +|+ ||++....
T Consensus       305 ~~~G~~p~~i~~~p~~G~~l~va~~~s  331 (365)
T d1jofa_         305 PTSGGHSNAVSPCPWSDEWMAITDDQE  331 (365)
T ss_dssp             SSCCTTCCCEEECTTCTTEEEEECSSS
T ss_pred             EcCCCCccEEEecCCCCCEEEEEeCCC
Confidence             2335799999986 788 67765443

>d1ri6a_ b.69.11.1 (A:) Putative isomerase YbhE {Escherichia coli [TaxId: 562]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Putative isomerase YbhE
family: Putative isomerase YbhE
domain: Putative isomerase YbhE
species: Escherichia coli [TaxId: 562]

Probab=99.07  E-value=1.6e-08  Score=78.97  Aligned_cols=174  Identities=13%  Similarity=0.093  Sum_probs=107.0

Q ss_pred             CcEEEEe-CCCcEEEEc--cCCceeEec--ccCCccccceEEccCCCEEEEEeCC-CcEEEEe-c-CC-c-EEEEeccCC
Q 026118           21 GVLYTAT-GDGWIKRMH--PNGTWEDWH--QVGSQSLLGLTTTKENNVIIVCDSQ-QGLLKVS-E-EG-V-TVLVSQFNG   90 (243)
Q Consensus        21 g~l~~~~-~~~~i~~~~--~~g~~~~~~--~~~~~~~~~i~~~~~g~l~~v~~~~-~gl~~~~-~-~g-~-~~~~~~~~~   90 (243)
                      ..+|+++ .++.|+.++  .++..+...  .....+. +|+++|||+.||++... +.|..++ . .+ . +....... 
T Consensus         4 ~~v~v~~~~~~~I~v~~~~~~~~l~~~~~~~~~~~v~-~la~spDG~~L~v~~~~d~~i~~~~i~~~~~~~~~~~~~~~-   81 (333)
T d1ri6a_           4 QTVYIASPESQQIHVWNLNHEGALTLTQVVDVPGQVQ-PMVVSPDKRYLYVGVRPEFRVLAYRIAPDDGALTFAAESAL-   81 (333)
T ss_dssp             EEEEEEEGGGTEEEEEEECTTSCEEEEEEEECSSCCC-CEEECTTSSEEEEEETTTTEEEEEEECTTTCCEEEEEEEEC-
T ss_pred             eEEEEECCCCCcEEEEEEcCCCCeEEEEEEcCCCCEe-EEEEeCCCCEEEEEECCCCeEEEEEEeCCCCcEEEeeeccc-
Confidence            4688888 777888887  345443332  2335567 99999999987888864 4465555 3 33 3 32222111 


Q ss_pred             CcccCCccEEEcCCCc-EEEEeCCCCCCcccccccccccCCCceEEEEeCCCCeeEEe---eccccccceEEEcCCCCEE
Q 026118           91 SQLRFANDVIEASDGS-LYFTVSSTKFTPAEYYLDLVSGEPHGVLLKYDPSTNQTSLV---LDGLYFANGVALSEDERFL  166 (243)
Q Consensus        91 ~~~~~~~~l~~d~~G~-l~v~~~~~~~~~~~~~~~~~~~~~~g~v~~~~~~~~~~~~~---~~~~~~~~gi~~~~dg~~l  166 (243)
                        ...|.+++++|||+ +++++..                 ...+..++.+.......   ......+.++.++++++++
T Consensus        82 --~~~p~~l~~spDg~~l~v~~~~-----------------~~~v~~~~~~~~~~~~~~~~~~~~~~~~~v~~s~d~~~~  142 (333)
T d1ri6a_          82 --PGSLTHISTDHQGQFVFVGSYN-----------------AGNVSVTRLEDGLPVGVVDVVEGLDGCHSANISPDNRTL  142 (333)
T ss_dssp             --SSCCSEEEECTTSSEEEEEETT-----------------TTEEEEEEEETTEEEEEEEEECCCTTBCCCEECTTSSEE
T ss_pred             --CCCceEEEEcCCCCEEeecccC-----------------CCceeeeccccccceecccccCCCccceEEEeeecceee
Confidence              23577899999997 5565422                 23454444443333322   2334567889999999999


Q ss_pred             EEEEcCCCeEEEEEeecCCCcceE---EeccCCCCCCCceEECCCCCEEEEE
Q 026118          167 VVCESWKFRCVKHFLKVSGRTDRE---IFIDNLPGGPDNVNLARDGSFWISI  215 (243)
Q Consensus       167 ~v~~~~~~~i~~~~~~~~~~~~~~---~~~~~~~~~~~~i~~d~~G~lwv~~  215 (243)
                      +++......|..++..........   .........|..+++++++......
T Consensus       143 ~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~g~~p~~i~~~~~~~~~~~~  194 (333)
T d1ri6a_         143 WVPALKQDRICLFTVSDDGHLVAQDPAEVTTVEGAGPRHMVFHPNEQYAYCV  194 (333)
T ss_dssp             EEEEGGGTEEEEEEECTTSCEEEEEEEEEECSTTCCEEEEEECTTSSEEEEE
T ss_pred             eccccccceeeEEEeccCCcceeeeceeeeeecCCCccEEEEeccceeEEee
Confidence            999988888999887653211111   1111223357789999888754433

>d1hzua2 b.70.2.1 (A:118-543) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Pseudomonas aeruginosa [TaxId: 287]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
family: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
domain: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=98.95  E-value=5e-08  Score=79.69  Aligned_cols=189  Identities=7%  Similarity=-0.053  Sum_probs=114.0

Q ss_pred             CCcccEEEcCCC--cEEEEe-CCCcEEEEc-cCCceeEecccCCccccceEEccCCCEEEEEeCCCcEEEEe-cCC-cEE
Q 026118           10 NHPEDVSVDGNG--VLYTAT-GDGWIKRMH-PNGTWEDWHQVGSQSLLGLTTTKENNVIIVCDSQQGLLKVS-EEG-VTV   83 (243)
Q Consensus        10 ~~p~~i~~d~~g--~l~~~~-~~~~i~~~~-~~g~~~~~~~~~~~~~~~i~~~~~g~l~~v~~~~~gl~~~~-~~g-~~~   83 (243)
                      ..|..++++.+.  .++++. .++.|..+| .++++.........+. +++|+|||+++|++...+.+..+| .++ ...
T Consensus        19 ~~p~~~~~~~d~~~~~~V~~~~dg~v~vwD~~t~~~~~~l~~g~~~~-~vafSPDGk~l~~~~~d~~v~vwd~~t~~~~~   97 (426)
T d1hzua2          19 DRPKKQLNDLDLPNLFSVTLRDAGQIALVDGDSKKIVKVIDTGYAVH-ISRMSASGRYLLVIGRDARIDMIDLWAKEPTK   97 (426)
T ss_dssp             GSCSSCCSCCCGGGEEEEEETTTTEEEEEETTTCSEEEEEECCSSEE-EEEECTTSCEEEEEETTSEEEEEETTSSSCEE
T ss_pred             cCCCcccccCCCCeEEEEEEcCCCEEEEEECCCCcEEEEEeCCCCee-EEEECCCCCEEEEEeCCCCEEEEEccCCceeE
Confidence            355555555443  455655 789999999 5666544333335577 999999999888888666688888 655 333


Q ss_pred             EEeccCCC-cccCCccEEEcCCCc-EEEEeCCCCCCcccccccccccCCCceEEEEeCCCCeeEEeecc-----------
Q 026118           84 LVSQFNGS-QLRFANDVIEASDGS-LYFTVSSTKFTPAEYYLDLVSGEPHGVLLKYDPSTNQTSLVLDG-----------  150 (243)
Q Consensus        84 ~~~~~~~~-~~~~~~~l~~d~~G~-l~v~~~~~~~~~~~~~~~~~~~~~~g~v~~~~~~~~~~~~~~~~-----------  150 (243)
                      ......+. +...+.++++.|||+ ++++..                 ..+.+..+|..+++.......           
T Consensus        98 ~~~i~~~~~~~~~~~s~~~spDG~~l~v~~~-----------------~~~~v~i~d~~~~~~~~~~~~~~~~~~~~~~~  160 (426)
T d1hzua2          98 VAEIKIGIEARSVESSKFKGYEDRYTIAGAY-----------------WPPQFAIMDGETLEPKQIVSTRGMTVDTQTYH  160 (426)
T ss_dssp             EEEEECCSEEEEEEECCSTTCTTTEEEEEEE-----------------ESSEEEEEETTTCCEEEEEECCEECSSSCCEE
T ss_pred             EEEEeCCCCCcceEEeeeecCCCCEEEEeec-----------------CCCeEEEEcCCccceeEEeeccCCCccceeec
Confidence            22211111 111222334457887 455532                 124566778877665543211           


Q ss_pred             -ccccceEEEcCCCCEEEEEEcCCCeEEEEEeecCCCcceEEeccCCCCCCCceEECCCCCEEEEEecC
Q 026118          151 -LYFANGVALSEDERFLVVCESWKFRCVKHFLKVSGRTDREIFIDNLPGGPDNVNLARDGSFWISIIKM  218 (243)
Q Consensus       151 -~~~~~gi~~~~dg~~l~v~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~i~~d~~G~lwv~~~~~  218 (243)
                       ......++.+++++.++++....+.+..++............  .....|.+++++++|+.++.....
T Consensus       161 ~~~~~~~i~~s~d~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~g~~~~~a~~~  227 (426)
T d1hzua2         161 PEPRVAAIIASHEHPEFIVNVKETGKVLLVNYKDIDNLTVTSI--GAAPFLADGGWDSSHRYFMTAANN  227 (426)
T ss_dssp             SCCCEEEEEECSSSSEEEEEETTTTEEEEEECSSSSSCEEEEE--ECCSSEEEEEECTTSCEEEEEETT
T ss_pred             CCCceeEEEECCCCCEEEEecCCCCeEEEEEeccccceeeEEe--ccCCccEeeeECCCCcEEEeeeec
Confidence             122345788889998888888888887776654322222222  233467889999999965555443

>d1nr0a1 b.69.4.1 (A:2-312) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=98.90  E-value=2e-07  Score=72.78  Aligned_cols=185  Identities=10%  Similarity=-0.080  Sum_probs=106.4

Q ss_pred             CcccEEEcCCCcEEEEeCCCcEEEEc-cCCceeEecccCCccccceEEccCCCEEEEEeCCCcEEEEe-cCC--cEEEEe
Q 026118           11 HPEDVSVDGNGVLYTATGDGWIKRMH-PNGTWEDWHQVGSQSLLGLTTTKENNVIIVCDSQQGLLKVS-EEG--VTVLVS   86 (243)
Q Consensus        11 ~p~~i~~d~~g~l~~~~~~~~i~~~~-~~g~~~~~~~~~~~~~~~i~~~~~g~l~~v~~~~~gl~~~~-~~g--~~~~~~   86 (243)
                      .|..|+.+++|..++...++.++.++ .+.+..........+..+++++|+|++|.++..++-|..++ .++  ..... 
T Consensus        19 ~~~~~a~~~~g~~l~~~~~~~v~i~~~~~~~~~~~~~~H~~~v~~~~~sp~g~~latg~~dg~i~iwd~~~~~~~~~~~-   97 (311)
T d1nr0a1          19 TAVVLGNTPAGDKIQYCNGTSVYTVPVGSLTDTEIYTEHSHQTTVAKTSPSGYYCASGDVHGNVRIWDTTQTTHILKTT-   97 (311)
T ss_dssp             CCCCCEECTTSSEEEEEETTEEEEEETTCSSCCEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEESSSTTCCEEEE-
T ss_pred             CeEEEEEcCCCCEEEEEeCCEEEEEECCCCceeEEEcCCCCCEEEEEEeCCCCeEeccccCceEeeeeeeccccccccc-
Confidence            45678999988654444456688887 34433322222123333899999999866666555577777 444  22211 


Q ss_pred             ccCCCcccCCccEEEcCCCcEEEEeCCCCCCcccccccccccCCCceEEEEeCCCCeeEEe-eccccccceEEEcCCCCE
Q 026118           87 QFNGSQLRFANDVIEASDGSLYFTVSSTKFTPAEYYLDLVSGEPHGVLLKYDPSTNQTSLV-LDGLYFANGVALSEDERF  165 (243)
Q Consensus        87 ~~~~~~~~~~~~l~~d~~G~l~v~~~~~~~~~~~~~~~~~~~~~~g~v~~~~~~~~~~~~~-~~~~~~~~gi~~~~dg~~  165 (243)
                       ... ....+.+|+++++|+++++...               .....+..++.++++.... .........++|+|++++
T Consensus        98 -~~~-~~~~v~~v~~s~d~~~l~~~~~---------------~~~~~~~v~~~~~~~~~~~l~~h~~~v~~v~~~~~~~~  160 (311)
T d1nr0a1          98 -IPV-FSGPVKDISWDSESKRIAAVGE---------------GRERFGHVFLFDTGTSNGNLTGQARAMNSVDFKPSRPF  160 (311)
T ss_dssp             -EEC-SSSCEEEEEECTTSCEEEEEEC---------------CSSCSEEEEETTTCCBCBCCCCCSSCEEEEEECSSSSC
T ss_pred             -ccc-ccCccccccccccccccccccc---------------ccccccccccccccccccccccccccccccccccccee
Confidence             111 1234678899999987766322               0111233445554443322 222344678999999997


Q ss_pred             EEEEEcCCCeEEEEEeecCCCcceEEeccCCCCCCCceEECCCCCEEEEEe
Q 026118          166 LVVCESWKFRCVKHFLKVSGRTDREIFIDNLPGGPDNVNLARDGSFWISII  216 (243)
Q Consensus       166 l~v~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~i~~d~~G~lwv~~~  216 (243)
                      ++++...++.|..|+....  .....+ .........++++++|++.++..
T Consensus       161 ~l~sgs~d~~i~i~d~~~~--~~~~~~-~~~~~~i~~v~~~p~~~~l~~~~  208 (311)
T d1nr0a1         161 RIISGSDDNTVAIFEGPPF--KFKSTF-GEHTKFVHSVRYNPDGSLFASTG  208 (311)
T ss_dssp             EEEEEETTSCEEEEETTTB--EEEEEE-CCCSSCEEEEEECTTSSEEEEEE
T ss_pred             eeccccccccccccccccc--cccccc-ccccccccccccCcccccccccc
Confidence            7777667788998886542  111111 11122345688888888655443

>d1qksa2 b.70.2.1 (A:136-567) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
family: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
domain: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
species: Paracoccus denitrificans [TaxId: 266]

Probab=98.82  E-value=6.2e-07  Score=73.40  Aligned_cols=157  Identities=11%  Similarity=0.082  Sum_probs=99.2

Q ss_pred             CCcccEEEcCCCc-EEEEeCCCcEEEEc-cCCcee--EecccCCccccce----EEccCCCEEEEEeCC-CcEEEEe-cC
Q 026118           10 NHPEDVSVDGNGV-LYTATGDGWIKRMH-PNGTWE--DWHQVGSQSLLGL----TTTKENNVIIVCDSQ-QGLLKVS-EE   79 (243)
Q Consensus        10 ~~p~~i~~d~~g~-l~~~~~~~~i~~~~-~~g~~~--~~~~~~~~~~~~i----~~~~~g~l~~v~~~~-~gl~~~~-~~   79 (243)
                      ..|.++++.|||+ ||+++.++.|..++ ..++..  ........+. ++    ++++||+.||++... ..+..+| .+
T Consensus        62 ~~~~~v~fSpDG~~l~~~s~dg~v~~~d~~t~~~~~~~~i~~~~~~~-~~~~s~~~SpDG~~l~vs~~~~~~v~i~d~~t  140 (432)
T d1qksa2          62 YAVHISRLSASGRYLFVIGRDGKVNMIDLWMKEPTTVAEIKIGSEAR-SIETSKMEGWEDKYAIAGAYWPPQYVIMDGET  140 (432)
T ss_dssp             SCEEEEEECTTSCEEEEEETTSEEEEEETTSSSCCEEEEEECCSEEE-EEEECCSTTCTTTEEEEEEEETTEEEEEETTT
T ss_pred             CCeeEEEECCCCCEEEEEcCCCCEEEEEeeCCCceEEEEEecCCCCC-CeEEecccCCCCCEEEEEcCCCCeEEEEeCcc
Confidence            3699999999995 78888888999998 334321  1111122333 44    456799976777654 4577778 55


Q ss_pred             C-cE-EEEec---cCC---CcccCCccEEEcCCCcEEEEeCCCCCCcccccccccccCCCceEEEEeCCCCeeEEe--ec
Q 026118           80 G-VT-VLVSQ---FNG---SQLRFANDVIEASDGSLYFTVSSTKFTPAEYYLDLVSGEPHGVLLKYDPSTNQTSLV--LD  149 (243)
Q Consensus        80 g-~~-~~~~~---~~~---~~~~~~~~l~~d~~G~l~v~~~~~~~~~~~~~~~~~~~~~~g~v~~~~~~~~~~~~~--~~  149 (243)
                      + .. .+...   ...   ........++++++|..|+....                ..+.|+.++..+.+...+  ..
T Consensus       141 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~s~dg~~~~vs~~----------------~~~~i~~~d~~~~~~~~~~~i~  204 (432)
T d1qksa2         141 LEPKKIQSTRGMTYDEQEYHPEPRVAAILASHYRPEFIVNVK----------------ETGKILLVDYTDLNNLKTTEIS  204 (432)
T ss_dssp             CCEEEEEECCEECTTTCCEESCCCEEEEEECSSSSEEEEEET----------------TTTEEEEEETTCSSEEEEEEEE
T ss_pred             ccceeeeccCCccccceeccCCCceeEEEECCCCCEEEEEEc----------------cCCeEEEEEccCCCcceEEEEc
Confidence            5 32 22211   000   01123345677888876554211                246788888876554332  23


Q ss_pred             cccccceEEEcCCCCEEEEEEcCCCeEEEEEeec
Q 026118          150 GLYFANGVALSEDERFLVVCESWKFRCVKHFLKV  183 (243)
Q Consensus       150 ~~~~~~gi~~~~dg~~l~v~~~~~~~i~~~~~~~  183 (243)
                      ....+.+++++|+|++++++....+.+..++...
T Consensus       205 ~g~~~~~~~~spdg~~~~va~~~~~~v~v~d~~~  238 (432)
T d1qksa2         205 AERFLHDGGLDGSHRYFITAANARNKLVVIDTKE  238 (432)
T ss_dssp             CCSSEEEEEECTTSCEEEEEEGGGTEEEEEETTT
T ss_pred             ccCccccceECCCCCEEEEeccccceEEEeeccc
Confidence            3456889999999999999988888888888654

>d1k32a3 b.69.9.1 (A:320-679) Tricorn protease domain 2 {Archaeon Thermoplasma acidophilum [TaxId: 2303]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Tricorn protease domain 2
family: Tricorn protease domain 2
domain: Tricorn protease domain 2
species: Archaeon Thermoplasma acidophilum [TaxId: 2303]

Probab=98.74  E-value=1.4e-06  Score=68.14  Aligned_cols=170  Identities=9%  Similarity=0.008  Sum_probs=103.2

Q ss_pred             EcC-CCcEEEEeCCCcEEEEcc-CCceeEecccCCccccceEEccCCCEEEEEeCCCc--EEEEe-cCC-cEEEEeccCC
Q 026118           17 VDG-NGVLYTATGDGWIKRMHP-NGTWEDWHQVGSQSLLGLTTTKENNVIIVCDSQQG--LLKVS-EEG-VTVLVSQFNG   90 (243)
Q Consensus        17 ~d~-~g~l~~~~~~~~i~~~~~-~g~~~~~~~~~~~~~~~i~~~~~g~l~~v~~~~~g--l~~~~-~~g-~~~~~~~~~~   90 (243)
                      +.| ||.++.....+.|+.++. .++..... ...... +++++|||++|+++....+  ++.++ .++ .+.+..    
T Consensus        10 fSP~dG~~~a~~~~g~v~v~d~~~~~~~~~~-~~~~v~-~~~~spDg~~l~~~~~~~g~~v~v~d~~~~~~~~~~~----   83 (360)
T d1k32a3          10 FSPLDGDLIAFVSRGQAFIQDVSGTYVLKVP-EPLRIR-YVRRGGDTKVAFIHGTREGDFLGIYDYRTGKAEKFEE----   83 (360)
T ss_dssp             EEECGGGCEEEEETTEEEEECTTSSBEEECS-CCSCEE-EEEECSSSEEEEEEEETTEEEEEEEETTTCCEEECCC----
T ss_pred             ccCCCCCEEEEEECCeEEEEECCCCcEEEcc-CCCCEE-EEEECCCCCEEEEEEcCCCCEEEEEECCCCcEEEeeC----
Confidence            456 888776666788999994 45555442 234445 8999999987666554443  56667 555 443221    


Q ss_pred             CcccCCccEEEcCCCcEEEEeCCCCCCcccccccccccCCCceEEEEeCCCCeeEEeec-cccccceEEEcCCCCEEEEE
Q 026118           91 SQLRFANDVIEASDGSLYFTVSSTKFTPAEYYLDLVSGEPHGVLLKYDPSTNQTSLVLD-GLYFANGVALSEDERFLVVC  169 (243)
Q Consensus        91 ~~~~~~~~l~~d~~G~l~v~~~~~~~~~~~~~~~~~~~~~~g~v~~~~~~~~~~~~~~~-~~~~~~gi~~~~dg~~l~v~  169 (243)
                       ....+.+++++|+|+..++..                 ..+.++.++.++++...... .......++++|||++|.++
T Consensus        84 -~~~~v~~~~~spdg~~l~~~~-----------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~spdg~~la~~  145 (360)
T d1k32a3          84 -NLGNVFAMGVDRNGKFAVVAN-----------------DRFEIMTVDLETGKPTVIERSREAMITDFTISDNSRFIAYG  145 (360)
T ss_dssp             -CCCSEEEEEECTTSSEEEEEE-----------------TTSEEEEEETTTCCEEEEEECSSSCCCCEEECTTSCEEEEE
T ss_pred             -CCceEEeeeecccccccceec-----------------cccccccccccccceeeeeecccccccchhhccceeeeeee
Confidence             123467889999998666532                 23578888988777665543 33455789999999988765


Q ss_pred             EcCC---------CeEEEEEeecCCCcceEEeccCCCCCCCceEECCCCC-EEEE
Q 026118          170 ESWK---------FRCVKHFLKVSGRTDREIFIDNLPGGPDNVNLARDGS-FWIS  214 (243)
Q Consensus       170 ~~~~---------~~i~~~~~~~~~~~~~~~~~~~~~~~~~~i~~d~~G~-lwv~  214 (243)
                      ....         ..+..++..+.   ...... ........+++.++|+ |+.+
T Consensus       146 ~~~~~~~~~~~~~~~~~v~d~~~~---~~~~~~-~~~~~~~~~~~spdg~~l~~~  196 (360)
T d1k32a3         146 FPLKHGETDGYVMQAIHVYDMEGR---KIFAAT-TENSHDYAPAFDADSKNLYYL  196 (360)
T ss_dssp             EEECSSTTCSCCEEEEEEEETTTT---EEEECS-CSSSBEEEEEECTTSCEEEEE
T ss_pred             ccccccceeeccccceeeeccccC---ceeeec-ccccccccccccCCCCEEEEE
Confidence            4321         23555554432   111111 1122234467788887 4433

>d1jmxb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Pseudomonas putida [TaxId: 303]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Quinohemoprotein amine dehydrogenase B chain
domain: Quinohemoprotein amine dehydrogenase B chain
species: Pseudomonas putida [TaxId: 303]

Probab=98.73  E-value=6e-07  Score=69.84  Aligned_cols=98  Identities=15%  Similarity=0.069  Sum_probs=68.7

Q ss_pred             ceEEccCCCEEEEEeCCCcEEEEe-cCC-cEEEEeccCCCcccCCccEEEcCCCc-EEEEeCCCCCCcccccccccccCC
Q 026118           54 GLTTTKENNVIIVCDSQQGLLKVS-EEG-VTVLVSQFNGSQLRFANDVIEASDGS-LYFTVSSTKFTPAEYYLDLVSGEP  130 (243)
Q Consensus        54 ~i~~~~~g~l~~v~~~~~gl~~~~-~~g-~~~~~~~~~~~~~~~~~~l~~d~~G~-l~v~~~~~~~~~~~~~~~~~~~~~  130 (243)
                      |+++++++++|++++..+.|..+| .++ .........   ...|.+++++|||+ +|++...                 
T Consensus         1 g~a~~~~~~~l~~~~~~~~v~v~D~~t~~~~~t~~~~~---~~~p~~l~~spDG~~l~v~~~~-----------------   60 (346)
T d1jmxb_           1 GPALKAGHEYMIVTNYPNNLHVVDVASDTVYKSCVMPD---KFGPGTAMMAPDNRTAYVLNNH-----------------   60 (346)
T ss_dssp             CCCCCTTCEEEEEEETTTEEEEEETTTTEEEEEEECSS---CCSSCEEEECTTSSEEEEEETT-----------------
T ss_pred             CccCCCCCcEEEEEcCCCEEEEEECCCCCEEEEEEcCC---CCCcceEEECCCCCEEEEEECC-----------------
Confidence            567889999867777667899999 666 222111111   23578999999997 5676432                 


Q ss_pred             CceEEEEeCCCCeeEEeecc-------ccccceEEEcCCCCEEEEEEc
Q 026118          131 HGVLLKYDPSTNQTSLVLDG-------LYFANGVALSEDERFLVVCES  171 (243)
Q Consensus       131 ~g~v~~~~~~~~~~~~~~~~-------~~~~~gi~~~~dg~~l~v~~~  171 (243)
                      .+.|+.+|..+++.......       ...|.++++++||+++|++..
T Consensus        61 ~~~v~~~d~~t~~~~~~~~~~~~~~~~~~~~~~v~~s~DG~~l~v~~~  108 (346)
T d1jmxb_          61 YGDIYGIDLDTCKNTFHANLSSVPGEVGRSMYSFAISPDGKEVYATVN  108 (346)
T ss_dssp             TTEEEEEETTTTEEEEEEESCCSTTEEEECSSCEEECTTSSEEEEEEE
T ss_pred             CCcEEEEeCccCeeeeeecccccccccCCceEEEEEecCCCEEEEEec
Confidence            46899999998876543211       235789999999999999864

>d1pbyb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Quinohemoprotein amine dehydrogenase B chain
domain: Quinohemoprotein amine dehydrogenase B chain
species: Paracoccus denitrificans [TaxId: 266]

Probab=98.72  E-value=4e-07  Score=70.60  Aligned_cols=141  Identities=10%  Similarity=0.029  Sum_probs=88.7

Q ss_pred             EEEEeCCCcEEEEc-cCCceeE-ecc--cCCccccceEEccCCCEEEEEeCC-CcEEEEe-cCC-cE-EEEeccCCCccc
Q 026118           23 LYTATGDGWIKRMH-PNGTWED-WHQ--VGSQSLLGLTTTKENNVIIVCDSQ-QGLLKVS-EEG-VT-VLVSQFNGSQLR   94 (243)
Q Consensus        23 l~~~~~~~~i~~~~-~~g~~~~-~~~--~~~~~~~~i~~~~~g~l~~v~~~~-~gl~~~~-~~g-~~-~~~~~~~~~~~~   94 (243)
                      ++++..++.|..+| .+++... +..  ....|. ++++++||+++|++... +.|..+| .++ .. .+..........
T Consensus         4 ~vt~~~d~~v~v~D~~s~~~~~~i~~~~~~~~~~-~i~~spDg~~l~v~~~~~~~v~v~D~~t~~~~~~~~~~~~~~~~~   82 (337)
T d1pbyb_           4 ILAPARPDKLVVIDTEKMAVDKVITIADAGPTPM-VPMVAPGGRIAYATVNKSESLVKIDLVTGETLGRIDLSTPEERVK   82 (337)
T ss_dssp             EEEEETTTEEEEEETTTTEEEEEEECTTCTTCCC-CEEECTTSSEEEEEETTTTEEEEEETTTCCEEEEEECCBTTEEEE
T ss_pred             EEEEcCCCEEEEEECCCCeEEEEEECCCCCCCcc-EEEECCCCCEEEEEECCCCeEEEEECCCCcEEEEEecCCCccccc
Confidence            55666788999999 4555433 222  224467 89999999987887644 4588889 676 32 222221112234


Q ss_pred             CCccEEEcCCCc-EEEEeCCCCCCcccccccccccCCCceEEEEeCCCCeeEEeeccccccceEEEcCCCCEEEEEE
Q 026118           95 FANDVIEASDGS-LYFTVSSTKFTPAEYYLDLVSGEPHGVLLKYDPSTNQTSLVLDGLYFANGVALSEDERFLVVCE  170 (243)
Q Consensus        95 ~~~~l~~d~~G~-l~v~~~~~~~~~~~~~~~~~~~~~~g~v~~~~~~~~~~~~~~~~~~~~~gi~~~~dg~~l~v~~  170 (243)
                      .+.+++++++|+ ++++......      ...........+..+|..+++..........+.++++++||+++|++.
T Consensus        83 ~~~~v~~s~dg~~l~~~~~~~~~------~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~  153 (337)
T d1pbyb_          83 SLFGAALSPDGKTLAIYESPVRL------ELTHFEVQPTRVALYDAETLSRRKAFEAPRQITMLAWARDGSKLYGLG  153 (337)
T ss_dssp             CTTCEEECTTSSEEEEEEEEEEE------CSSCEEECCCEEEEEETTTTEEEEEEECCSSCCCEEECTTSSCEEEES
T ss_pred             ceeeEEEcCCCcEEEEeecCCcc------eeeeccccccceeeccccCCeEEEeccccCCceEEEEcCCCCEEEEEc
Confidence            677899999987 5555321000      000011123467788988887766555566788999999999888864

>d1gxra_ b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Groucho/tle1, C-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.71  E-value=5.6e-06  Score=64.70  Aligned_cols=176  Identities=7%  Similarity=-0.053  Sum_probs=108.3

Q ss_pred             ccEEEcCCCcEE-EEeCCCcEEEEc-cCCceeEecccCCccccceEEccCCCEEEEEeCCCcEEEEe-cCC-cEEEEecc
Q 026118           13 EDVSVDGNGVLY-TATGDGWIKRMH-PNGTWEDWHQVGSQSLLGLTTTKENNVIIVCDSQQGLLKVS-EEG-VTVLVSQF   88 (243)
Q Consensus        13 ~~i~~d~~g~l~-~~~~~~~i~~~~-~~g~~~~~~~~~~~~~~~i~~~~~g~l~~v~~~~~gl~~~~-~~g-~~~~~~~~   88 (243)
                      ..+++.+++.+. .+..++.|..++ .+++..........+...++++++++.++++...+.+..++ .++ ...... .
T Consensus       145 ~~~~~~~~~~~l~s~~~d~~i~~~~~~~~~~~~~~~~~~~~v~~l~~s~~~~~~~~~~~d~~v~i~d~~~~~~~~~~~-~  223 (337)
T d1gxra_         145 YALAISPDSKVCFSCCSDGNIAVWDLHNQTLVRQFQGHTDGASCIDISNDGTKLWTGGLDNTVRSWDLREGRQLQQHD-F  223 (337)
T ss_dssp             EEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEEEEE-C
T ss_pred             ccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccceeecccc-c
Confidence            356677777544 445777888887 34443333222122333788999998867776655677778 666 221111 1


Q ss_pred             CCCcccCCccEEEcCCCcEEEEeCCCCCCcccccccccccCCCceEEEEeCCCCeeEEeeccccccceEEEcCCCCEEEE
Q 026118           89 NGSQLRFANDVIEASDGSLYFTVSSTKFTPAEYYLDLVSGEPHGVLLKYDPSTNQTSLVLDGLYFANGVALSEDERFLVV  168 (243)
Q Consensus        89 ~~~~~~~~~~l~~d~~G~l~v~~~~~~~~~~~~~~~~~~~~~~g~v~~~~~~~~~~~~~~~~~~~~~gi~~~~dg~~l~v  168 (243)
                          ...+.++++++++++.++..                 ..+.+..++..+++.............+++++++++|+.
T Consensus       224 ----~~~i~~l~~~~~~~~l~~~~-----------------~d~~i~i~d~~~~~~~~~~~~~~~i~~v~~s~~g~~l~s  282 (337)
T d1gxra_         224 ----TSQIFSLGYCPTGEWLAVGM-----------------ESSNVEVLHVNKPDKYQLHLHESCVLSLKFAYCGKWFVS  282 (337)
T ss_dssp             ----SSCEEEEEECTTSSEEEEEE-----------------TTSCEEEEETTSSCEEEECCCSSCEEEEEECTTSSEEEE
T ss_pred             ----ccceEEEEEcccccccceec-----------------cccccccccccccccccccccccccceEEECCCCCEEEE
Confidence                13456788999998766522                 235678888876665544444455678999999995554


Q ss_pred             EEcCCCeEEEEEeecCCCcceEEeccCCCCCCCceEECCCCCEEEEE
Q 026118          169 CESWKFRCVKHFLKVSGRTDREIFIDNLPGGPDNVNLARDGSFWISI  215 (243)
Q Consensus       169 ~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~i~~d~~G~lwv~~  215 (243)
                      + ..++.|..|+......  ...+  ........++++++|++.++.
T Consensus       283 ~-s~Dg~i~iwd~~~~~~--~~~~--~~~~~v~~~~~s~d~~~l~t~  324 (337)
T d1gxra_         283 T-GKDNLLNAWRTPYGAS--IFQS--KESSSVLSCDISVDDKYIVTG  324 (337)
T ss_dssp             E-ETTSEEEEEETTTCCE--EEEE--ECSSCEEEEEECTTSCEEEEE
T ss_pred             E-eCCCeEEEEECCCCCE--EEEc--cCCCCEEEEEEeCCCCEEEEE
Confidence            4 5678899998754321  1111  122345668899999855543

>d1qnia2 b.69.3.1 (A:10-450) Nitrous oxide reductase, N-terminal domain {Pseudomonas nautica [TaxId: 2743]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Nitrous oxide reductase, N-terminal domain
family: Nitrous oxide reductase, N-terminal domain
domain: Nitrous oxide reductase, N-terminal domain
species: Pseudomonas nautica [TaxId: 2743]

Probab=98.67  E-value=8.4e-07  Score=72.35  Aligned_cols=203  Identities=12%  Similarity=0.051  Sum_probs=114.1

Q ss_pred             CcccEEEc--CCC-cEEEEe-CCCcEEEEc-cCCceeEecc--cCCccccceEEccCCCEEEEEeCCC-cE---------
Q 026118           11 HPEDVSVD--GNG-VLYTAT-GDGWIKRMH-PNGTWEDWHQ--VGSQSLLGLTTTKENNVIIVCDSQQ-GL---------   73 (243)
Q Consensus        11 ~p~~i~~d--~~g-~l~~~~-~~~~i~~~~-~~g~~~~~~~--~~~~~~~~i~~~~~g~l~~v~~~~~-gl---------   73 (243)
                      +|.....+  +|| .||+++ .+.+|.++| .+++......  ....|. +++++++|+.+||+.... .+         
T Consensus        71 hP~~s~t~gtpDGr~lfV~d~~~~rVavIDl~t~k~~~ii~iP~g~gph-gi~~spdg~t~YV~~~~~~~v~~~~dg~~~  149 (441)
T d1qnia2          71 HPHISMTDGRYDGKYLFINDKANTRVARIRLDIMKTDKITHIPNVQAIH-GLRLQKVPKTNYVFCNAEFVIPQPNDGTDF  149 (441)
T ss_dssp             CCEEEEETTEEEEEEEEEEETTTTEEEEEETTTTEEEEEEECTTCCCEE-EEEECCSSBCCEEEEEECSCEESSCSSSCC
T ss_pred             CCCcceecccCCCCEEEEEcCCCCEEEEEECCCCcEeeEEecCCCCCcc-ceEEeccCCEEEEEeccCCcccccCccccc
Confidence            56655554  578 599988 678999999 4555444322  134567 999999999667765322 22         


Q ss_pred             ---------EEEe-cCCcEEEEeccCCCcccCCccEEEcCCCc-EEEEeCCCCCCcc---------------ccccc--c
Q 026118           74 ---------LKVS-EEGVTVLVSQFNGSQLRFANDVIEASDGS-LYFTVSSTKFTPA---------------EYYLD--L  125 (243)
Q Consensus        74 ---------~~~~-~~g~~~~~~~~~~~~~~~~~~l~~d~~G~-l~v~~~~~~~~~~---------------~~~~~--~  125 (243)
                               ..+| .+. +.......   ...+.++.++++|. +|++....+-...               .+...  .
T Consensus       150 ~~~~~~~~~~~iD~~t~-~v~~qI~v---~~~p~~v~~spdGk~a~vt~~nse~~~~id~~t~~~~d~i~v~n~p~~~~~  225 (441)
T d1qnia2         150 SLDNSYTMFTAIDAETM-DVAWQVIV---DGNLDNTDADYTGKYATSTCYNSERAVDLAGTMRNDRDWVVVFNVERIAAA  225 (441)
T ss_dssp             CGGGEEEEEEEEETTTC-SEEEEEEE---SSCCCCEEECSSSSEEEEEESCTTCCSSHHHHTCSSBCEEEEEEHHHHHHH
T ss_pred             ccccccceEEeecCccc-eeeEEEec---CCCccceEECCCCCEEEEEecCCCceEEEeccCcceEEEEEeCCccceEEE
Confidence                     2234 222 11111111   12577889999997 6666533211100               00000  0


Q ss_pred             -----cccCCCceEEEEeCC-CCeeEEeeccccccceEEEcCCCCEEEEEEcCCCeEEEEEeec------CCCcceE-Ee
Q 026118          126 -----VSGEPHGVLLKYDPS-TNQTSLVLDGLYFANGVALSEDERFLVVCESWKFRCVKHFLKV------SGRTDRE-IF  192 (243)
Q Consensus       126 -----~~~~~~g~v~~~~~~-~~~~~~~~~~~~~~~gi~~~~dg~~l~v~~~~~~~i~~~~~~~------~~~~~~~-~~  192 (243)
                           .......++..++.. +..+.........|.|+.++|||+++|+++..++.|..||+..      +.+.... +.
T Consensus       226 ~~dGk~~~v~~~~v~vvd~~~~~~v~~~IPvgksPhGv~vSPDGkyl~~~~~~~~tvsv~d~~k~~~~~~~~~~~~~~~~  305 (441)
T d1qnia2         226 VKAGNFKTIGDSKVPVVDGRGESEFTRYIPVPKNPHGLNTSPDGKYFIANGKLSPTVSVIAIDKLDDLFEDKIELRDTIV  305 (441)
T ss_dssp             HHTTCCBCCTTCCCCEEECSSSCSSEEEECCBSSCCCEEECTTSCEEEEECTTSSBEEEEEGGGHHHHTTTSSCGGGGEE
T ss_pred             ecCCCEEEeCCCCcEEEEcccCCceEEEEeCCCCccCceECCCCCEEEEeCCcCCcEEEEEeehhhhHhhccCCcceEEE
Confidence                 000111234444432 2233333444567999999999999999999999999999753      1111111 11


Q ss_pred             ccCCCC-CCCceEECCCCCEEEEEecC
Q 026118          193 IDNLPG-GPDNVNLARDGSFWISIIKM  218 (243)
Q Consensus       193 ~~~~~~-~~~~i~~d~~G~lwv~~~~~  218 (243)
                      .....+ .|-.-++|.+|+.|.+..-.
T Consensus       306 ~~~~~glgplh~~fd~~g~~yts~~~d  332 (441)
T d1qnia2         306 AEPELGLGPLHTTFDGRGNAYTTLFID  332 (441)
T ss_dssp             ECCBCCSCEEEEEECSSSEEEEEETTT
T ss_pred             eecccccCcccceecCCceEEEccccc
Confidence            111112 34446889999999886544

>d1nr0a2 b.69.4.1 (A:313-611) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=98.64  E-value=1.7e-06  Score=66.30  Aligned_cols=188  Identities=18%  Similarity=0.217  Sum_probs=111.5

Q ss_pred             eecccccCCcccEEEcCCCc-EEEEeCCCcEEEEc-cCCceeEecc-cCCccccceEEccCCCEEEEEeCCCcEEEEe-c
Q 026118            3 KLGEGIVNHPEDVSVDGNGV-LYTATGDGWIKRMH-PNGTWEDWHQ-VGSQSLLGLTTTKENNVIIVCDSQQGLLKVS-E   78 (243)
Q Consensus         3 ~~~~g~~~~p~~i~~d~~g~-l~~~~~~~~i~~~~-~~g~~~~~~~-~~~~~~~~i~~~~~g~l~~v~~~~~gl~~~~-~   78 (243)
                      ++..|.-..-.+|++.++|. |..+..++.|..++ .+++...... ....+..++++.++|++ +++..+..+..++ .
T Consensus         6 ~~~~GH~~~V~~l~~s~dg~~l~s~s~Dg~v~vWd~~~~~~~~~~~~~h~~~v~~v~~~~~g~~-~~~~~d~~v~~~~~~   84 (299)
T d1nr0a2           6 QVRYGHNKAITALSSSADGKTLFSADAEGHINSWDISTGISNRVFPDVHATMITGIKTTSKGDL-FTVSWDDHLKVVPAG   84 (299)
T ss_dssp             EEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCCEEECSSCSCSSCEEEEEECTTSCE-EEEETTTEEEEECSS
T ss_pred             eEcCCCCCCcEEEEECCCCCEEEEEcCCCeEEEEECCCCcEEEEEcCCCCCcEEEEEeecccee-ecccceeeEEEeccC
Confidence            45566444566799999986 44556889999998 4555443322 11233337899999998 7777666777776 3


Q ss_pred             CC-cEEEEeccCCCcccCCccEEEcCCCcEEEEeCCCCCCcccccccccccCCCceEEEEeCCCCeeEEeeccccccceE
Q 026118           79 EG-VTVLVSQFNGSQLRFANDVIEASDGSLYFTVSSTKFTPAEYYLDLVSGEPHGVLLKYDPSTNQTSLVLDGLYFANGV  157 (243)
Q Consensus        79 ~g-~~~~~~~~~~~~~~~~~~l~~d~~G~l~v~~~~~~~~~~~~~~~~~~~~~~g~v~~~~~~~~~~~~~~~~~~~~~gi  157 (243)
                      .. ......... .....+.++++.++|++.++...                  +.+..++..  +...... ......+
T Consensus        85 ~~~~~~~~~~~~-~~~~~~~~~~~s~~g~~~~~~~~------------------~~i~~~~~~--~~~~~~~-~~~~~~~  142 (299)
T d1nr0a2          85 GSGVDSSKAVAN-KLSSQPLGLAVSADGDIAVAACY------------------KHIAIYSHG--KLTEVPI-SYNSSCV  142 (299)
T ss_dssp             SSSSCTTSCCEE-ECSSCEEEEEECTTSSCEEEEES------------------SEEEEEETT--EEEEEEC-SSCEEEE
T ss_pred             Cccccccccccc-ccccccccccccccccccccccc------------------ccccccccc--ccccccc-ccccccc
Confidence            22 111000000 01124557888899987766322                  356666653  3333222 2335678


Q ss_pred             EEcCCCCEEEEEEcCCCeEEEEEeecCCCcceEEeccCCCCCCCceEECCCCCEEEEEe
Q 026118          158 ALSEDERFLVVCESWKFRCVKHFLKVSGRTDREIFIDNLPGGPDNVNLARDGSFWISII  216 (243)
Q Consensus       158 ~~~~dg~~l~v~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~i~~d~~G~lwv~~~  216 (243)
                      +++++++.+.++ ..++.|..+++.+..........  ....+..+++++++++.++..
T Consensus       143 ~~s~~~~~l~~g-~~dg~i~~~d~~~~~~~~~~~~~--~~~~i~~~~~~~~~~~l~~~~  198 (299)
T d1nr0a2         143 ALSNDKQFVAVG-GQDSKVHVYKLSGASVSEVKTIV--HPAEITSVAFSNNGAFLVATD  198 (299)
T ss_dssp             EECTTSCEEEEE-ETTSEEEEEEEETTEEEEEEEEE--CSSCEEEEEECTTSSEEEEEE
T ss_pred             cccccccccccc-ccccccccccccccccccccccc--ccccccccccccccccccccc
Confidence            999999966655 45789999998764332222221  123456688888887555443

>d1gxra_ b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Groucho/tle1, C-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.64  E-value=4.2e-06  Score=65.44  Aligned_cols=148  Identities=11%  Similarity=0.089  Sum_probs=97.1

Q ss_pred             CcccEEEcCCCc-EEEEeCCCcEEEEc-cCCceeEecccCCccccceEEccCCCEEEEEeCCCcEEEEe-cCCcEEEEec
Q 026118           11 HPEDVSVDGNGV-LYTATGDGWIKRMH-PNGTWEDWHQVGSQSLLGLTTTKENNVIIVCDSQQGLLKVS-EEGVTVLVSQ   87 (243)
Q Consensus        11 ~p~~i~~d~~g~-l~~~~~~~~i~~~~-~~g~~~~~~~~~~~~~~~i~~~~~g~l~~v~~~~~gl~~~~-~~g~~~~~~~   87 (243)
                      ...++++.+++. ++++..++.+..++ ..++............ +++++++++++.++...+.+..++ ..+.......
T Consensus       185 ~v~~l~~s~~~~~~~~~~~d~~v~i~d~~~~~~~~~~~~~~~i~-~l~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~  263 (337)
T d1gxra_         185 GASCIDISNDGTKLWTGGLDNTVRSWDLREGRQLQQHDFTSQIF-SLGYCPTGEWLAVGMESSNVEVLHVNKPDKYQLHL  263 (337)
T ss_dssp             CEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEEEEECSSCEE-EEEECTTSSEEEEEETTSCEEEEETTSSCEEEECC
T ss_pred             ccccccccccccccccccccccccccccccceeecccccccceE-EEEEcccccccceeccccccccccccccccccccc
Confidence            345677887774 55666888898888 4454333222223345 889999999866666666677888 5442211111


Q ss_pred             cCCCcccCCccEEEcCCCcEEEEeCCCCCCcccccccccccCCCceEEEEeCCCCeeEEeeccccccceEEEcCCCCEEE
Q 026118           88 FNGSQLRFANDVIEASDGSLYFTVSSTKFTPAEYYLDLVSGEPHGVLLKYDPSTNQTSLVLDGLYFANGVALSEDERFLV  167 (243)
Q Consensus        88 ~~~~~~~~~~~l~~d~~G~l~v~~~~~~~~~~~~~~~~~~~~~~g~v~~~~~~~~~~~~~~~~~~~~~gi~~~~dg~~l~  167 (243)
                          ....+.+++++++|+++++.+                 ..+.|..+|..+++.............++|++++++|.
T Consensus       264 ----~~~~i~~v~~s~~g~~l~s~s-----------------~Dg~i~iwd~~~~~~~~~~~~~~~v~~~~~s~d~~~l~  322 (337)
T d1gxra_         264 ----HESCVLSLKFAYCGKWFVSTG-----------------KDNLLNAWRTPYGASIFQSKESSSVLSCDISVDDKYIV  322 (337)
T ss_dssp             ----CSSCEEEEEECTTSSEEEEEE-----------------TTSEEEEEETTTCCEEEEEECSSCEEEEEECTTSCEEE
T ss_pred             ----cccccceEEECCCCCEEEEEe-----------------CCCeEEEEECCCCCEEEEccCCCCEEEEEEeCCCCEEE
Confidence                123467889999999777632                 23578888888776554444445667899999999666


Q ss_pred             EEEcCCCeEEEEEe
Q 026118          168 VCESWKFRCVKHFL  181 (243)
Q Consensus       168 v~~~~~~~i~~~~~  181 (243)
                      .+ ..++.|..|++
T Consensus       323 t~-s~D~~I~vWdl  335 (337)
T d1gxra_         323 TG-SGDKKATVYEV  335 (337)
T ss_dssp             EE-ETTSCEEEEEE
T ss_pred             EE-eCCCeEEEEEE
Confidence            55 45678888775

>d1k8kc_ b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taurus) [TaxId: 9913]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Arp2/3 complex 41 kDa subunit ARPC1
species: Cow (Bos taurus) [TaxId: 9913]

Probab=98.62  E-value=2.2e-05  Score=62.16  Aligned_cols=153  Identities=10%  Similarity=0.063  Sum_probs=92.1

Q ss_pred             ccEEEcCCCcEE-EEeCCCcEEEEcc-CCceeEecc--cCCccccceEEccCCCEEEEEeCCCcEEEEe-cCC-cEEEEe
Q 026118           13 EDVSVDGNGVLY-TATGDGWIKRMHP-NGTWEDWHQ--VGSQSLLGLTTTKENNVIIVCDSQQGLLKVS-EEG-VTVLVS   86 (243)
Q Consensus        13 ~~i~~d~~g~l~-~~~~~~~i~~~~~-~g~~~~~~~--~~~~~~~~i~~~~~g~l~~v~~~~~gl~~~~-~~g-~~~~~~   86 (243)
                      .+++++++|.+. ++..++.|..++. .++......  ....+..+|+++|++++|..+..+.-+..++ .++ .+....
T Consensus        11 t~~~~s~dg~~la~~~~~~~i~iw~~~~~~~~~~~~l~gH~~~V~~l~fsp~~~~l~s~s~D~~i~vWd~~~~~~~~~~~   90 (371)
T d1k8kc_          11 SCHAWNKDRTQIAICPNNHEVHIYEKSGNKWVQVHELKEHNGQVTGVDWAPDSNRIVTCGTDRNAYVWTLKGRTWKPTLV   90 (371)
T ss_dssp             CEEEECTTSSEEEEECSSSEEEEEEEETTEEEEEEEEECCSSCEEEEEEETTTTEEEEEETTSCEEEEEEETTEEEEEEE
T ss_pred             EEEEECCCCCEEEEEeCCCEEEEEECCCCCEEEEEEecCCCCCEEEEEECCCCCEEEEEECCCeEEEEeecccccccccc
Confidence            579999999765 5557788888884 454332221  1123333899999999856666555577777 555 333222


Q ss_pred             ccCCCcccCCccEEEcCCCcEEEEeCCCCCCcccccccccccCCCceEEEEeCCCCeeEEe--ecc-ccccceEEEcCCC
Q 026118           87 QFNGSQLRFANDVIEASDGSLYFTVSSTKFTPAEYYLDLVSGEPHGVLLKYDPSTNQTSLV--LDG-LYFANGVALSEDE  163 (243)
Q Consensus        87 ~~~~~~~~~~~~l~~d~~G~l~v~~~~~~~~~~~~~~~~~~~~~~g~v~~~~~~~~~~~~~--~~~-~~~~~gi~~~~dg  163 (243)
                       ..+ ....+.+++++|+++.+++.+.               ...-.++.++.........  ... ......++++|++
T Consensus        91 -~~~-~~~~v~~i~~~p~~~~l~~~s~---------------d~~i~i~~~~~~~~~~~~~~~~~~~~~~v~~v~~~p~~  153 (371)
T d1k8kc_          91 -ILR-INRAARCVRWAPNEKKFAVGSG---------------SRVISICYFEQENDWWVCKHIKKPIRSTVLSLDWHPNS  153 (371)
T ss_dssp             -CCC-CSSCEEEEEECTTSSEEEEEET---------------TSSEEEEEEETTTTEEEEEEECTTCCSCEEEEEECTTS
T ss_pred             -ccc-ccccccccccccccccceeecc---------------cCcceeeeeecccccccccccccccccccccccccccc
Confidence             111 2245678899999986665332               1223566666653322211  111 2345679999999


Q ss_pred             CEEEEEEcCCCeEEEEEeec
Q 026118          164 RFLVVCESWKFRCVKHFLKV  183 (243)
Q Consensus       164 ~~l~v~~~~~~~i~~~~~~~  183 (243)
                      ++|. +...++.|..|+...
T Consensus       154 ~~l~-s~s~D~~v~v~~~~~  172 (371)
T d1k8kc_         154 VLLA-AGSCDFKCRIFSAYI  172 (371)
T ss_dssp             SEEE-EEETTSCEEEEECCC
T ss_pred             ccee-ccccCcEEEEEeecc
Confidence            9554 445678888888753

>d1nr0a2 b.69.4.1 (A:313-611) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=98.58  E-value=3.1e-06  Score=64.75  Aligned_cols=151  Identities=12%  Similarity=0.093  Sum_probs=93.5

Q ss_pred             CCcccEEEcCCCcEEEEeCCCcEEEEccCCceeEecccCCccccceEEccCCCEEEEEeCCCcEEEEe-cCC-cEEEEec
Q 026118           10 NHPEDVSVDGNGVLYTATGDGWIKRMHPNGTWEDWHQVGSQSLLGLTTTKENNVIIVCDSQQGLLKVS-EEG-VTVLVSQ   87 (243)
Q Consensus        10 ~~p~~i~~d~~g~l~~~~~~~~i~~~~~~g~~~~~~~~~~~~~~~i~~~~~g~l~~v~~~~~gl~~~~-~~g-~~~~~~~   87 (243)
                      ..+.++++.++|.+.++...+.+..++ .++...... ..... .++++++++++.++...+.+..++ .++ ...+...
T Consensus       100 ~~~~~~~~s~~g~~~~~~~~~~i~~~~-~~~~~~~~~-~~~~~-~~~~s~~~~~l~~g~~dg~i~~~d~~~~~~~~~~~~  176 (299)
T d1nr0a2         100 SQPLGLAVSADGDIAVAACYKHIAIYS-HGKLTEVPI-SYNSS-CVALSNDKQFVAVGGQDSKVHVYKLSGASVSEVKTI  176 (299)
T ss_dssp             SCEEEEEECTTSSCEEEEESSEEEEEE-TTEEEEEEC-SSCEE-EEEECTTSCEEEEEETTSEEEEEEEETTEEEEEEEE
T ss_pred             ccccccccccccccccccccccccccc-ccccccccc-ccccc-cccccccccccccccccccccccccccccccccccc
Confidence            346678888888777666566677775 333322222 12334 788999999866766656677777 555 3332221


Q ss_pred             cCCCcccCCccEEEcCCCcEEEEeCCCCCCcccccccccccCCCceEEEEeCCCCeeEEeec----cccccceEEEcCCC
Q 026118           88 FNGSQLRFANDVIEASDGSLYFTVSSTKFTPAEYYLDLVSGEPHGVLLKYDPSTNQTSLVLD----GLYFANGVALSEDE  163 (243)
Q Consensus        88 ~~~~~~~~~~~l~~d~~G~l~v~~~~~~~~~~~~~~~~~~~~~~g~v~~~~~~~~~~~~~~~----~~~~~~gi~~~~dg  163 (243)
                      ..   ...+.++++++++.+.++.+                 ..+.|..++..++.......    .......++++|++
T Consensus       177 ~~---~~~i~~~~~~~~~~~l~~~~-----------------~d~~i~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~~~  236 (299)
T d1nr0a2         177 VH---PAEITSVAFSNNGAFLVATD-----------------QSRKVIPYSVANNFELAHTNSWTFHTAKVACVSWSPDN  236 (299)
T ss_dssp             EC---SSCEEEEEECTTSSEEEEEE-----------------TTSCEEEEEGGGTTEESCCCCCCCCSSCEEEEEECTTS
T ss_pred             cc---cccccccccccccccccccc-----------------cccccccccccccccccccccccccccccccccccccc
Confidence            11   13467889999998766532                 23567888876543322111    12345679999999


Q ss_pred             CEEEEEEcCCCeEEEEEeecC
Q 026118          164 RFLVVCESWKFRCVKHFLKVS  184 (243)
Q Consensus       164 ~~l~v~~~~~~~i~~~~~~~~  184 (243)
                      ++++.+ ..++.|..|++...
T Consensus       237 ~~l~sg-s~dg~i~iwd~~~~  256 (299)
T d1nr0a2         237 VRLATG-SLDNSVIVWNMNKP  256 (299)
T ss_dssp             SEEEEE-ETTSCEEEEETTCT
T ss_pred             cceEEE-cCCCEEEEEECCCC
Confidence            966655 45688999997653

>d1k8kc_ b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taurus) [TaxId: 9913]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Arp2/3 complex 41 kDa subunit ARPC1
species: Cow (Bos taurus) [TaxId: 9913]

Probab=98.52  E-value=1.9e-05  Score=62.57  Aligned_cols=183  Identities=9%  Similarity=-0.108  Sum_probs=99.2

Q ss_pred             cccEEEcCCCcEE-EEeCCCcEEEEcc-CCceeEec--ccCCccccceEEccCCCEEEEEeCCCcEEEEe-cCC--cEEE
Q 026118           12 PEDVSVDGNGVLY-TATGDGWIKRMHP-NGTWEDWH--QVGSQSLLGLTTTKENNVIIVCDSQQGLLKVS-EEG--VTVL   84 (243)
Q Consensus        12 p~~i~~d~~g~l~-~~~~~~~i~~~~~-~g~~~~~~--~~~~~~~~~i~~~~~g~l~~v~~~~~gl~~~~-~~g--~~~~   84 (243)
                      -.+|++.+++.+. .+..++.|..++. .+......  .....+..++.++|+++.++++...+-+..++ ...  ....
T Consensus        54 V~~l~fsp~~~~l~s~s~D~~i~vWd~~~~~~~~~~~~~~~~~~v~~i~~~p~~~~l~~~s~d~~i~i~~~~~~~~~~~~  133 (371)
T d1k8kc_          54 VTGVDWAPDSNRIVTCGTDRNAYVWTLKGRTWKPTLVILRINRAARCVRWAPNEKKFAVGSGSRVISICYFEQENDWWVC  133 (371)
T ss_dssp             EEEEEEETTTTEEEEEETTSCEEEEEEETTEEEEEEECCCCSSCEEEEEECTTSSEEEEEETTSSEEEEEEETTTTEEEE
T ss_pred             EEEEEECCCCCEEEEEECCCeEEEEeecccccccccccccccccccccccccccccceeecccCcceeeeeecccccccc
Confidence            4678899988644 4557888988883 44433221  11122233889999999856666444344444 222  2222


Q ss_pred             EeccCCCcccCCccEEEcCCCcEEEEeCCCCCCcccccccccccCCCceEEEEeCCCCe------------------eE-
Q 026118           85 VSQFNGSQLRFANDVIEASDGSLYFTVSSTKFTPAEYYLDLVSGEPHGVLLKYDPSTNQ------------------TS-  145 (243)
Q Consensus        85 ~~~~~~~~~~~~~~l~~d~~G~l~v~~~~~~~~~~~~~~~~~~~~~~g~v~~~~~~~~~------------------~~-  145 (243)
                      ... .......+.+++++|+|+++++.+.                 .+.|..++.....                  .. 
T Consensus       134 ~~~-~~~~~~~v~~v~~~p~~~~l~s~s~-----------------D~~v~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~  195 (371)
T d1k8kc_         134 KHI-KKPIRSTVLSLDWHPNSVLLAAGSC-----------------DFKCRIFSAYIKEVEERPAPTPWGSKMPFGELMF  195 (371)
T ss_dssp             EEE-CTTCCSCEEEEEECTTSSEEEEEET-----------------TSCEEEEECCCTTTSCCCCCBTTBSCCCTTCEEE
T ss_pred             ccc-ccccccccccccccccccceecccc-----------------CcEEEEEeeccCccccccccccccccccceeeee
Confidence            211 1111234567889999987775322                 2334444433211                  11 


Q ss_pred             EeeccccccceEEEcCCCCEEEEEEcCCCeEEEEEeecCCCcceEEeccCCCCCCCceEECCCCCEEEEEe
Q 026118          146 LVLDGLYFANGVALSEDERFLVVCESWKFRCVKHFLKVSGRTDREIFIDNLPGGPDNVNLARDGSFWISII  216 (243)
Q Consensus       146 ~~~~~~~~~~gi~~~~dg~~l~v~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~i~~d~~G~lwv~~~  216 (243)
                      .........++++|+|+++.|+.+ ..++.|..++.....  ....+. ........+++.++|++.++..
T Consensus       196 ~~~~~~~~v~~~~~s~~g~~l~s~-~~d~~i~iwd~~~~~--~~~~~~-~~~~~v~s~~fs~d~~~la~g~  262 (371)
T d1k8kc_         196 ESSSSCGWVHGVCFSANGSRVAWV-SHDSTVCLADADKKM--AVATLA-SETLPLLAVTFITESSLVAAGH  262 (371)
T ss_dssp             ECCCCSSCEEEEEECSSSSEEEEE-ETTTEEEEEEGGGTT--EEEEEE-CSSCCEEEEEEEETTEEEEEET
T ss_pred             eccCccCcEEEEEeeccccccccc-ccCCcceEEeeeccc--ceeeee-cccccceeeeecCCCCEEEEEc
Confidence            111122345789999999966655 457889999976532  122221 1111234577777776655543

>d1jmxb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Pseudomonas putida [TaxId: 303]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Quinohemoprotein amine dehydrogenase B chain
domain: Quinohemoprotein amine dehydrogenase B chain
species: Pseudomonas putida [TaxId: 303]

Probab=98.51  E-value=4.6e-07  Score=70.52  Aligned_cols=102  Identities=9%  Similarity=-0.015  Sum_probs=71.4

Q ss_pred             EEEcCCCcEEEEeCCCCCCcccccccccccCCCceEEEEeCCCCeeEEee--ccccccceEEEcCCCCEEEEEEcCCCeE
Q 026118           99 VIEASDGSLYFTVSSTKFTPAEYYLDLVSGEPHGVLLKYDPSTNQTSLVL--DGLYFANGVALSEDERFLVVCESWKFRC  176 (243)
Q Consensus        99 l~~d~~G~l~v~~~~~~~~~~~~~~~~~~~~~~g~v~~~~~~~~~~~~~~--~~~~~~~gi~~~~dg~~l~v~~~~~~~i  176 (243)
                      ++++++|+++++.+.                 .+.|..+|.+++++....  .....|.+++++|||+++|++...++.|
T Consensus         2 ~a~~~~~~~l~~~~~-----------------~~~v~v~D~~t~~~~~t~~~~~~~~p~~l~~spDG~~l~v~~~~~~~v   64 (346)
T d1jmxb_           2 PALKAGHEYMIVTNY-----------------PNNLHVVDVASDTVYKSCVMPDKFGPGTAMMAPDNRTAYVLNNHYGDI   64 (346)
T ss_dssp             CCCCTTCEEEEEEET-----------------TTEEEEEETTTTEEEEEEECSSCCSSCEEEECTTSSEEEEEETTTTEE
T ss_pred             ccCCCCCcEEEEEcC-----------------CCEEEEEECCCCCEEEEEEcCCCCCcceEEECCCCCEEEEEECCCCcE
Confidence            467788887776432                 358999999999876533  2345688999999999999999888999


Q ss_pred             EEEEeecCCCcceEEeccC---CCCCCCceEECCCCC-EEEEEec
Q 026118          177 VKHFLKVSGRTDREIFIDN---LPGGPDNVNLARDGS-FWISIIK  217 (243)
Q Consensus       177 ~~~~~~~~~~~~~~~~~~~---~~~~~~~i~~d~~G~-lwv~~~~  217 (243)
                      ..||...............   ....|.++++++||+ +|++...
T Consensus        65 ~~~d~~t~~~~~~~~~~~~~~~~~~~~~~v~~s~DG~~l~v~~~~  109 (346)
T d1jmxb_          65 YGIDLDTCKNTFHANLSSVPGEVGRSMYSFAISPDGKEVYATVNP  109 (346)
T ss_dssp             EEEETTTTEEEEEEESCCSTTEEEECSSCEEECTTSSEEEEEEEE
T ss_pred             EEEeCccCeeeeeecccccccccCCceEEEEEecCCCEEEEEecC
Confidence            9999865322111111100   112578899999997 7887643

>d2madh_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Gram negative methylotrophic bacteria (Thiobacillus versutus) [TaxId: 34007]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Methylamine dehydrogenase, H-chain
domain: Methylamine dehydrogenase, H-chain
species: Gram negative methylotrophic bacteria (Thiobacillus versutus) [TaxId: 34007]

Probab=98.49  E-value=2.4e-05  Score=61.54  Aligned_cols=152  Identities=6%  Similarity=-0.122  Sum_probs=93.0

Q ss_pred             cccEEEcCCC-cEEEEe-----CCCcEEEEc-cCCceeEecccCCccccceEEccCCCEEEEEeCC----------CcEE
Q 026118           12 PEDVSVDGNG-VLYTAT-----GDGWIKRMH-PNGTWEDWHQVGSQSLLGLTTTKENNVIIVCDSQ----------QGLL   74 (243)
Q Consensus        12 p~~i~~d~~g-~l~~~~-----~~~~i~~~~-~~g~~~~~~~~~~~~~~~i~~~~~g~l~~v~~~~----------~gl~   74 (243)
                      ..++++.++| ++|++.     ..+.|+.+| ..+++..... .+... +++++|||+.++++...          +.+.
T Consensus        23 ~~~~a~spdg~~~~~~~~~~~~~~~~v~v~D~~tg~~~~~~~-~~~~~-~~a~SpDG~~l~va~~~~~~~~~~~~~~~v~  100 (373)
T d2madh_          23 TNDEAPGADGRRSYINLPAHHSAIIQQWVLDAGSGSILGHVN-GGFLP-NPVAAHSGSEFALASTSFSRIAKGKRTDYVE  100 (373)
T ss_pred             ccccccCCCCCEEEEEcccccCCCceEEEEECCCCCEEEEEe-CCCCc-cEEEcCCCCEEEEEeecCCcccccccceEEE
Confidence            4567788888 688875     235689998 4666544322 24445 79999999987887642          1255


Q ss_pred             EEe-cCC-cEEEEeccCC---CcccCCccEEEcCCCc-EEEEeCCCCCCcccccccccccCCCceEEEEeCCCCeeEEee
Q 026118           75 KVS-EEG-VTVLVSQFNG---SQLRFANDVIEASDGS-LYFTVSSTKFTPAEYYLDLVSGEPHGVLLKYDPSTNQTSLVL  148 (243)
Q Consensus        75 ~~~-~~g-~~~~~~~~~~---~~~~~~~~l~~d~~G~-l~v~~~~~~~~~~~~~~~~~~~~~~g~v~~~~~~~~~~~~~~  148 (243)
                      .+| .++ ..........   .....+.++++.++|+ +++....                ....+..++..+.+...  
T Consensus       101 v~D~~t~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~~~v~~~~----------------~~~~~~~~~~~~~~~~~--  162 (373)
T d2madh_         101 VFDPVTFLPIADIELPDAPRFDVGPYSWMNANTPNNADLLFFQFA----------------AGPAVGLVVQGGSSDDQ--  162 (373)
T ss_pred             EEECCCCcEEEEEecCCcceeEeccCCCcEEEEeCCCcEEEEEEc----------------CCCceEEeeccCCeEEE--
Confidence            666 555 2221111111   1123456778888775 4444211                12344555555444332  


Q ss_pred             ccccccceEEEcCCCCEEEEEEcCCCeEEEEEeecC
Q 026118          149 DGLYFANGVALSEDERFLVVCESWKFRCVKHFLKVS  184 (243)
Q Consensus       149 ~~~~~~~gi~~~~dg~~l~v~~~~~~~i~~~~~~~~  184 (243)
                       ....+.+++++++|+.+|++...++.+..++....
T Consensus       163 -~~~~~~~~~~s~~g~~~~v~~~~dg~~~~~~~~~~  197 (373)
T d2madh_         163 -LLSSPTCYHIHPGAPSTFYLLCAQGGLAKTDHAGG  197 (373)
T ss_pred             -EeccceeEEEecCCCcEEEEEcCCCeEEEEEcCCc
Confidence             23456788999999999999888899999887654

>d1k32a3 b.69.9.1 (A:320-679) Tricorn protease domain 2 {Archaeon Thermoplasma acidophilum [TaxId: 2303]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Tricorn protease domain 2
family: Tricorn protease domain 2
domain: Tricorn protease domain 2
species: Archaeon Thermoplasma acidophilum [TaxId: 2303]

Probab=98.47  E-value=1.8e-06  Score=67.43  Aligned_cols=134  Identities=13%  Similarity=0.092  Sum_probs=88.4

Q ss_pred             ceEEcc-CCCEEEEEeCCCcEEEEe-cCC-cEEEEeccCCCcccCCccEEEcCCCcEEEEeCCCCCCcccccccccccCC
Q 026118           54 GLTTTK-ENNVIIVCDSQQGLLKVS-EEG-VTVLVSQFNGSQLRFANDVIEASDGSLYFTVSSTKFTPAEYYLDLVSGEP  130 (243)
Q Consensus        54 ~i~~~~-~g~l~~v~~~~~gl~~~~-~~g-~~~~~~~~~~~~~~~~~~l~~d~~G~l~v~~~~~~~~~~~~~~~~~~~~~  130 (243)
                      ...|+| ||++ ++....+.++.++ .++ ...+.   .   ...+.+++++|||+..+..+.               ..
T Consensus         7 ~~~fSP~dG~~-~a~~~~g~v~v~d~~~~~~~~~~---~---~~~v~~~~~spDg~~l~~~~~---------------~~   64 (360)
T d1k32a3           7 AEDFSPLDGDL-IAFVSRGQAFIQDVSGTYVLKVP---E---PLRIRYVRRGGDTKVAFIHGT---------------RE   64 (360)
T ss_dssp             EEEEEECGGGC-EEEEETTEEEEECTTSSBEEECS---C---CSCEEEEEECSSSEEEEEEEE---------------TT
T ss_pred             cccccCCCCCE-EEEEECCeEEEEECCCCcEEEcc---C---CCCEEEEEECCCCCEEEEEEc---------------CC
Confidence            446788 8998 4544456788998 555 44331   1   234678999999975443211               11


Q ss_pred             CceEEEEeCCCCeeEEeeccccccceEEEcCCCCEEEEEEcCCCeEEEEEeecCCCcceEEeccCCCCCCCceEECCCCC
Q 026118          131 HGVLLKYDPSTNQTSLVLDGLYFANGVALSEDERFLVVCESWKFRCVKHFLKVSGRTDREIFIDNLPGGPDNVNLARDGS  210 (243)
Q Consensus       131 ~g~v~~~~~~~~~~~~~~~~~~~~~gi~~~~dg~~l~v~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~i~~d~~G~  210 (243)
                      ...|+.+|.++++.+.+.........++|+|||++|..+ ..++.++.++.++...  ...+ .........+++.++|+
T Consensus        65 g~~v~v~d~~~~~~~~~~~~~~~v~~~~~spdg~~l~~~-~~~~~~~~~~~~~~~~--~~~~-~~~~~~~~~~~~spdg~  140 (360)
T d1k32a3          65 GDFLGIYDYRTGKAEKFEENLGNVFAMGVDRNGKFAVVA-NDRFEIMTVDLETGKP--TVIE-RSREAMITDFTISDNSR  140 (360)
T ss_dssp             EEEEEEEETTTCCEEECCCCCCSEEEEEECTTSSEEEEE-ETTSEEEEEETTTCCE--EEEE-ECSSSCCCCEEECTTSC
T ss_pred             CCEEEEEECCCCcEEEeeCCCceEEeeeeccccccccee-ccccccccccccccce--eeee-ecccccccchhhcccee
Confidence            235888999988888776666667889999999977766 4567899888765322  1222 12333456789999998


Q ss_pred             EEE
Q 026118          211 FWI  213 (243)
Q Consensus       211 lwv  213 (243)
                      ..+
T Consensus       141 ~la  143 (360)
T d1k32a3         141 FIA  143 (360)
T ss_dssp             EEE
T ss_pred             eee
Confidence            543

>d1mdah_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Methylamine dehydrogenase, H-chain
domain: Methylamine dehydrogenase, H-chain
species: Paracoccus denitrificans [TaxId: 266]

Probab=98.46  E-value=1.9e-05  Score=62.46  Aligned_cols=97  Identities=10%  Similarity=-0.038  Sum_probs=61.0

Q ss_pred             CccEEEcCCCc-EEEEeCCCCCCcccccccccccCCCceEEEEeCCCCeeEEeeccccccceEEEcCCCC-EEEEEEcCC
Q 026118           96 ANDVIEASDGS-LYFTVSSTKFTPAEYYLDLVSGEPHGVLLKYDPSTNQTSLVLDGLYFANGVALSEDER-FLVVCESWK  173 (243)
Q Consensus        96 ~~~l~~d~~G~-l~v~~~~~~~~~~~~~~~~~~~~~~g~v~~~~~~~~~~~~~~~~~~~~~gi~~~~dg~-~l~v~~~~~  173 (243)
                      ...+++++++. +|++.....         .........|+.+|..+++..........+.++++++||+ .||++...+
T Consensus       266 ~~~~a~~~~~~~~~v~~~~~~---------~~~~~~~~~v~v~D~~t~~~~~~~~~~~~~~~~a~spDG~~~ly~s~~~~  336 (368)
T d1mdah_         266 FQMVAKLKNTDGIMILTVEHS---------RSCLAAAENTSSVTASVGQTSGPISNGHDSDAIIAAQDGASDNYANSAGT  336 (368)
T ss_dssp             SSCEEEETTTTEEEEEEEECS---------SCTTSCEEEEEEEESSSCCEEECCEEEEEECEEEECCSSSCEEEEEETTT
T ss_pred             ceeEEEcCCCCEEEEEecCCC---------ceeecCCceEEEEECCCCcEeEEecCCCceeEEEECCCCCEEEEEEeCCC
Confidence            34567777654 555532100         0111223468889999887554433345678999999997 578898888


Q ss_pred             CeEEEEEeecCCCcceEEeccCCCCCCCceEE
Q 026118          174 FRCVKHFLKVSGRTDREIFIDNLPGGPDNVNL  205 (243)
Q Consensus       174 ~~i~~~~~~~~~~~~~~~~~~~~~~~~~~i~~  205 (243)
                      +.|..||...++  ....+  .....|.+|++
T Consensus       337 ~~v~v~D~~tgk--~~~~i--~~g~~P~~l~~  364 (368)
T d1mdah_         337 EVLDIYDAASDQ--DQSSV--ELDKGPESLSV  364 (368)
T ss_dssp             TEEEEEESSSCE--EEEEC--CCCSCCCEEEC
T ss_pred             CeEEEEECCCCC--EEEEE--ECCCCCCEEEE
Confidence            999999976532  12222  23446888876

>d2bbkh_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Methylamine dehydrogenase, H-chain
domain: Methylamine dehydrogenase, H-chain
species: Paracoccus denitrificans [TaxId: 266]

Probab=98.45  E-value=1.5e-05  Score=62.17  Aligned_cols=184  Identities=10%  Similarity=-0.083  Sum_probs=102.0

Q ss_pred             cCCC-cEEEEeC-----CCcEEEEc-cCCceeEecccCCccccceEEccCCCEEEEEeCC----------CcEEEEe-cC
Q 026118           18 DGNG-VLYTATG-----DGWIKRMH-PNGTWEDWHQVGSQSLLGLTTTKENNVIIVCDSQ----------QGLLKVS-EE   79 (243)
Q Consensus        18 d~~g-~l~~~~~-----~~~i~~~~-~~g~~~~~~~~~~~~~~~i~~~~~g~l~~v~~~~----------~gl~~~~-~~   79 (243)
                      .+|| ++|+++.     ...|+.+| ..++...... .+... +++++|||+.+|+++..          +.|..+| .+
T Consensus        10 spdg~~~~v~~~~~~~~~~~v~v~D~~tg~~~~~~~-~g~~~-~~a~SpDg~~l~v~~~~~~~~~~g~~d~~v~v~D~~t   87 (355)
T d2bbkh_          10 APDARRVYVNDPAHFAAVTQQFVIDGEAGRVIGMID-GGFLP-NPVVADDGSFIAHASTVFSRIARGERTDYVEVFDPVT   87 (355)
T ss_dssp             CCCTTEEEEEECGGGCSSEEEEEEETTTTEEEEEEE-ECSSC-EEEECTTSSCEEEEEEEEEETTEEEEEEEEEEECTTT
T ss_pred             CCCCCEEEEEecccCCCcCeEEEEECCCCcEEEEEE-CCCCC-ceEEcCCCCEEEEEeCCCccccccCCCCEEEEEECCC
Confidence            4677 5888762     34689998 4555433222 23445 78999999976887531          2377788 56


Q ss_pred             C-cE-EEEeccC--CCcccCCccEEEcCCCc-EEEEeCCCCCCcccccccccccCCCceEEEEeCCCCeeEEeecc----
Q 026118           80 G-VT-VLVSQFN--GSQLRFANDVIEASDGS-LYFTVSSTKFTPAEYYLDLVSGEPHGVLLKYDPSTNQTSLVLDG----  150 (243)
Q Consensus        80 g-~~-~~~~~~~--~~~~~~~~~l~~d~~G~-l~v~~~~~~~~~~~~~~~~~~~~~~g~v~~~~~~~~~~~~~~~~----  150 (243)
                      + .. .+.....  ..-...+..++++++|+ +++++..                ....++.++..+++.......    
T Consensus        88 ~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~~~v~~~~----------------~~~~~~~~~~~~~~~~~~~~~~~~~  151 (355)
T d2bbkh_          88 LLPTADIELPDAPRFLVGTYPWMTSLTPDGKTLLFYQFS----------------PAPAVGVVDLEGKAFKRMLDVPDCY  151 (355)
T ss_dssp             CCEEEEEEETTCCCCCBSCCGGGEEECTTSSEEEEEECS----------------SSCEEEEEETTTTEEEEEEECCSEE
T ss_pred             CCEEEEEecCCcceeecCCCCceEEEecCCCeeEEecCC----------------CCceeeeeecCCCcEeeEEecCCcc
Confidence            6 32 2222111  11123567899999986 5665432                223566677776654432211    


Q ss_pred             ----ccccceEEEcCCCCEEEEEEcCCCeEEEEEeecCCCcceEEeccCC-CCCCCceE-ECCCCCEEEEEecCC
Q 026118          151 ----LYFANGVALSEDERFLVVCESWKFRCVKHFLKVSGRTDREIFIDNL-PGGPDNVN-LARDGSFWISIIKMD  219 (243)
Q Consensus       151 ----~~~~~gi~~~~dg~~l~v~~~~~~~i~~~~~~~~~~~~~~~~~~~~-~~~~~~i~-~d~~G~lwv~~~~~~  219 (243)
                          ......+++++|++.+++.......+..++...........+.... ...+..+. ...+|++|+.....+
T Consensus       152 ~~~~~~~~~~~~~~~dg~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~  226 (355)
T d2bbkh_         152 HIFPTAPDTFFMHCRDGSLAKVAFGTEGTPEITHTEVFHPEDEFLINHPAYSQKAGRLVWPTYTGKIHQIDLSSG  226 (355)
T ss_dssp             EEEEEETTEEEEEETTSCEEEEECCSSSCCEEEECCCCSCTTSCBCSCCEEETTTTEEEEEBTTSEEEEEECTTS
T ss_pred             eEeecCCcceEEEcCCCCEEEEEecCCCeEEEEecccccceecceeeeccccCCCCeEEEecCCCeEEEEecCCC
Confidence                1223457889999988888776677776665432211111110000 00112233 356777888776554

>d1tbga_ b.69.4.1 (A:) beta1-subunit of the signal-transducing G protein heterotrimer {Cow (Bos taurus) [TaxId: 9913]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: beta1-subunit of the signal-transducing G protein heterotrimer
species: Cow (Bos taurus) [TaxId: 9913]

Probab=98.42  E-value=2.5e-05  Score=60.01  Aligned_cols=145  Identities=12%  Similarity=0.050  Sum_probs=87.7

Q ss_pred             EEEcCCCcEE-EEeCCCcEEEEc-cCCceeE-ecccCCccccceEEccCCCEEEEEeCCCcEEEEe-cCC-cEEEEeccC
Q 026118           15 VSVDGNGVLY-TATGDGWIKRMH-PNGTWED-WHQVGSQSLLGLTTTKENNVIIVCDSQQGLLKVS-EEG-VTVLVSQFN   89 (243)
Q Consensus        15 i~~d~~g~l~-~~~~~~~i~~~~-~~g~~~~-~~~~~~~~~~~i~~~~~g~l~~v~~~~~gl~~~~-~~g-~~~~~~~~~   89 (243)
                      +...+.+.++ .+..++.|..++ .+++... +........ ++++++++++++++..+..+..++ ... ......  .
T Consensus       190 ~~~~~~~~~~~~~~~d~~v~i~d~~~~~~~~~~~~h~~~i~-~v~~~p~~~~l~s~s~d~~i~~~~~~~~~~~~~~~--~  266 (340)
T d1tbga_         190 LSLAPDTRLFVSGACDASAKLWDVREGMCRQTFTGHESDIN-AICFFPNGNAFATGSDDATCRLFDLRADQELMTYS--H  266 (340)
T ss_dssp             EEECTTSSEEEEEETTTEEEEEETTTTEEEEEECCCSSCEE-EEEECTTSSEEEEEETTSCEEEEETTTTEEEEEEC--C
T ss_pred             eccccccceeEEeecCceEEEEECCCCcEEEEEeCCCCCeE-EEEECCCCCEEEEEeCCCeEEEEeecccccccccc--c
Confidence            3344555554 444778888888 3444332 222222334 889999999856666555567777 444 222111  1


Q ss_pred             CCcccCCccEEEcCCCcEEEEeCCCCCCcccccccccccCCCceEEEEeCCCCeeEEeecc-ccccceEEEcCCCCEEEE
Q 026118           90 GSQLRFANDVIEASDGSLYFTVSSTKFTPAEYYLDLVSGEPHGVLLKYDPSTNQTSLVLDG-LYFANGVALSEDERFLVV  168 (243)
Q Consensus        90 ~~~~~~~~~l~~d~~G~l~v~~~~~~~~~~~~~~~~~~~~~~g~v~~~~~~~~~~~~~~~~-~~~~~gi~~~~dg~~l~v  168 (243)
                      ......+..++++++|++.++.+                 ..+.|..+|..+++......+ ......++|++++++|+.
T Consensus       267 ~~~~~~i~~~~~s~~~~~l~~g~-----------------~dg~i~iwd~~~~~~~~~~~~H~~~V~~l~~s~d~~~l~s  329 (340)
T d1tbga_         267 DNIICGITSVSFSKSGRLLLAGY-----------------DDFNCNVWDALKADRAGVLAGHDNRVSCLGVTDDGMAVAT  329 (340)
T ss_dssp             TTCCSCEEEEEECSSSCEEEEEE-----------------TTSCEEEEETTTCCEEEEECCCSSCEEEEEECTTSSCEEE
T ss_pred             ccccCceEEEEECCCCCEEEEEE-----------------CCCEEEEEECCCCcEEEEEcCCCCCEEEEEEeCCCCEEEE
Confidence            11223456789999998777632                 235788889887765544333 345678999999996655


Q ss_pred             EEcCCCeEEEEE
Q 026118          169 CESWKFRCVKHF  180 (243)
Q Consensus       169 ~~~~~~~i~~~~  180 (243)
                      + ..++.|..+|
T Consensus       330 ~-s~Dg~v~iWd  340 (340)
T d1tbga_         330 G-SWDSFLKIWN  340 (340)
T ss_dssp             E-ETTSCEEEEC
T ss_pred             E-ccCCEEEEeC
Confidence            4 4567777653

>d1nr0a1 b.69.4.1 (A:2-312) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=98.41  E-value=4.9e-05  Score=58.75  Aligned_cols=183  Identities=12%  Similarity=0.064  Sum_probs=106.3

Q ss_pred             CCcccEEEcCCCcEE-EEeCCCcEEEEcc-CCc-e-eE-ecccCCccccceEEccCCCEEEEEeCC-Cc-EEEEe-cCC-
Q 026118           10 NHPEDVSVDGNGVLY-TATGDGWIKRMHP-NGT-W-ED-WHQVGSQSLLGLTTTKENNVIIVCDSQ-QG-LLKVS-EEG-   80 (243)
Q Consensus        10 ~~p~~i~~d~~g~l~-~~~~~~~i~~~~~-~g~-~-~~-~~~~~~~~~~~i~~~~~g~l~~v~~~~-~g-l~~~~-~~g-   80 (243)
                      ..-.++++.|+|++. ++..++.|..++. .++ . .. +........ +++++++++++.++..+ .. +..++ +.+ 
T Consensus        59 ~~v~~~~~sp~g~~latg~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~-~v~~s~d~~~l~~~~~~~~~~~~v~~~~~~~  137 (311)
T d1nr0a1          59 HQTTVAKTSPSGYYCASGDVHGNVRIWDTTQTTHILKTTIPVFSGPVK-DISWDSESKRIAAVGEGRERFGHVFLFDTGT  137 (311)
T ss_dssp             SCEEEEEECTTSSEEEEEETTSEEEEEESSSTTCCEEEEEECSSSCEE-EEEECTTSCEEEEEECCSSCSEEEEETTTCC
T ss_pred             CCEEEEEEeCCCCeEeccccCceEeeeeeeccccccccccccccCccc-ccccccccccccccccccccccccccccccc
Confidence            345678889999755 5558899999983 332 2 11 221122334 89999999984555432 22 34445 444 


Q ss_pred             cEEEEeccCCCcccCCccEEEcCCCcE-EEEeCCCCCCcccccccccccCCCceEEEEeCCCCeeEEeecc-ccccceEE
Q 026118           81 VTVLVSQFNGSQLRFANDVIEASDGSL-YFTVSSTKFTPAEYYLDLVSGEPHGVLLKYDPSTNQTSLVLDG-LYFANGVA  158 (243)
Q Consensus        81 ~~~~~~~~~~~~~~~~~~l~~d~~G~l-~v~~~~~~~~~~~~~~~~~~~~~~g~v~~~~~~~~~~~~~~~~-~~~~~gi~  158 (243)
                      ...   ...+ ....+.+++++|+|.. +++.+                 ..+.|..+|..+++....... ....+.++
T Consensus       138 ~~~---~l~~-h~~~v~~v~~~~~~~~~l~sgs-----------------~d~~i~i~d~~~~~~~~~~~~~~~~i~~v~  196 (311)
T d1nr0a1         138 SNG---NLTG-QARAMNSVDFKPSRPFRIISGS-----------------DDNTVAIFEGPPFKFKSTFGEHTKFVHSVR  196 (311)
T ss_dssp             BCB---CCCC-CSSCEEEEEECSSSSCEEEEEE-----------------TTSCEEEEETTTBEEEEEECCCSSCEEEEE
T ss_pred             ccc---cccc-cccccccccccccceeeecccc-----------------cccccccccccccccccccccccccccccc
Confidence            211   1111 1234678889998874 44421                 235688889887766554433 34457899


Q ss_pred             EcCCCCEEEEEEcCCCeEEEEEeecCCCcceEEecc---CC---CCCCCceEECCCCCEEEEEec
Q 026118          159 LSEDERFLVVCESWKFRCVKHFLKVSGRTDREIFID---NL---PGGPDNVNLARDGSFWISIIK  217 (243)
Q Consensus       159 ~~~dg~~l~v~~~~~~~i~~~~~~~~~~~~~~~~~~---~~---~~~~~~i~~d~~G~lwv~~~~  217 (243)
                      ++|++++++.+ ..++.|..|+.....  ....+..   ..   ......++++++|++.++...
T Consensus       197 ~~p~~~~l~~~-~~d~~v~~~d~~~~~--~~~~~~~~~~~~~~h~~~V~~~~~s~~~~~l~tgs~  258 (311)
T d1nr0a1         197 YNPDGSLFAST-GGDGTIVLYNGVDGT--KTGVFEDDSLKNVAHSGSVFGLTWSPDGTKIASASA  258 (311)
T ss_dssp             ECTTSSEEEEE-ETTSCEEEEETTTCC--EEEECBCTTSSSCSSSSCEEEEEECTTSSEEEEEET
T ss_pred             cCccccccccc-ccccccccccccccc--ccccccccccccccccccccccccCCCCCEEEEEeC
Confidence            99999966655 456789888875431  1112211   11   112345888898886555433

>d2madh_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Gram negative methylotrophic bacteria (Thiobacillus versutus) [TaxId: 34007]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Methylamine dehydrogenase, H-chain
domain: Methylamine dehydrogenase, H-chain
species: Gram negative methylotrophic bacteria (Thiobacillus versutus) [TaxId: 34007]

Probab=98.37  E-value=9.3e-05  Score=58.01  Aligned_cols=186  Identities=9%  Similarity=0.012  Sum_probs=99.6

Q ss_pred             CCcccEEEcCCC-cEEEEe-CCCcEEEEcc-CCceeEecc-----cCCc--cccceEEccCCCEEEEEeCCCcEEEEe-c
Q 026118           10 NHPEDVSVDGNG-VLYTAT-GDGWIKRMHP-NGTWEDWHQ-----VGSQ--SLLGLTTTKENNVIIVCDSQQGLLKVS-E   78 (243)
Q Consensus        10 ~~p~~i~~d~~g-~l~~~~-~~~~i~~~~~-~g~~~~~~~-----~~~~--~~~~i~~~~~g~l~~v~~~~~gl~~~~-~   78 (243)
                      ..|.++++.++| .+|++. .++.+..++. .++......     ....  .. .+..++++.++++. ....++.++ .
T Consensus       165 ~~~~~~~~s~~g~~~~v~~~~dg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~-~~~~v~~~~~~  242 (373)
T d2madh_         165 SSPTCYHIHPGAPSTFYLLCAQGGLAKTDHAGGAAGAGLVGAMLTAAQNLLTQ-PAQANKSGRIVWPV-YSGKILQADIS  242 (373)
T ss_pred             ccceeEEEecCCCcEEEEEcCCCeEEEEEcCCceeeEEEeeeccccCccceee-eEEECCCceEEEec-CCceEEEEEcC
Confidence            457778888777 466554 6777887773 333222111     0111  12 34455555553333 334566666 3


Q ss_pred             CC-cEEEEec-cC-------CCcccCCccEEEcCCCc-EEEEeCCCCCCcccccccccccCCCceEEEEeCCCCeeEEee
Q 026118           79 EG-VTVLVSQ-FN-------GSQLRFANDVIEASDGS-LYFTVSSTKFTPAEYYLDLVSGEPHGVLLKYDPSTNQTSLVL  148 (243)
Q Consensus        79 ~g-~~~~~~~-~~-------~~~~~~~~~l~~d~~G~-l~v~~~~~~~~~~~~~~~~~~~~~~g~v~~~~~~~~~~~~~~  148 (243)
                      ++ ...+... ..       .........++..++|. +|+......        ........+.+..+|..+++.....
T Consensus       243 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~--------~~~~~~~~~~v~~~d~~t~~~~~~~  314 (373)
T d2madh_         243 AAGATNKAPIDALSGGRKADTWRPGGWQQVAYLKSSDGIYLLTSEQS--------AWKLHAAAKEVTSVTGLVGQTSSQI  314 (373)
T ss_pred             CCeEEEEEeeccccCcEEeeeeccCcceeeEEecCCCeEEEecCCCc--------eEEeecCCCeEEEEECCCCcEEEEe
Confidence            33 2211110 00       00011233456677765 444322100        0111223456888998888765554


Q ss_pred             ccccccceEEEcCCCCE-EEEEEcCCCeEEEEEeecCCCcceEEeccCCCCCCCceEECCC
Q 026118          149 DGLYFANGVALSEDERF-LVVCESWKFRCVKHFLKVSGRTDREIFIDNLPGGPDNVNLARD  208 (243)
Q Consensus       149 ~~~~~~~gi~~~~dg~~-l~v~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~i~~d~~  208 (243)
                      .....+.+++|+|||+. ||++...++.|..||...++  ..+.+. .....|..|++..+
T Consensus       315 ~~~~~~~~~a~spDG~~~l~vt~~~d~~v~v~D~~tg~--~~~~~~-~~g~~P~~l~~~~~  372 (373)
T d2madh_         315 SLGHDVDAISVAQDGGPDLYALSAGTEVLHIYDAGAGD--QDQSTV-ELGSGPQVLSVMNE  372 (373)
T ss_pred             cCCCCeeEEEECCCCCEEEEEEeCCCCeEEEEECCCCC--EEEEEC-CCCCCCcEEEEecC
Confidence            44566889999999986 56777788899999987542  223332 23446888887654

>d1hzua2 b.70.2.1 (A:118-543) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Pseudomonas aeruginosa [TaxId: 287]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
family: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
domain: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=98.37  E-value=2.6e-05  Score=63.02  Aligned_cols=157  Identities=11%  Similarity=0.025  Sum_probs=91.2

Q ss_pred             CCcccEEEcCCCc-EEEEeCCCcEEEEc-cCCceeEec--ccCCccc---cceEEccCCCEEEEEeCCC-cEEEEe-cCC
Q 026118           10 NHPEDVSVDGNGV-LYTATGDGWIKRMH-PNGTWEDWH--QVGSQSL---LGLTTTKENNVIIVCDSQQ-GLLKVS-EEG   80 (243)
Q Consensus        10 ~~p~~i~~d~~g~-l~~~~~~~~i~~~~-~~g~~~~~~--~~~~~~~---~~i~~~~~g~l~~v~~~~~-gl~~~~-~~g   80 (243)
                      ..|.+|++.|||+ ||++..++.|..+| ..++.....  .....+.   .++++++||+.++++.... .+..+| ..+
T Consensus        62 ~~~~~vafSPDGk~l~~~~~d~~v~vwd~~t~~~~~~~~i~~~~~~~~~~~s~~~spDG~~l~v~~~~~~~v~i~d~~~~  141 (426)
T d1hzua2          62 YAVHISRMSASGRYLLVIGRDARIDMIDLWAKEPTKVAEIKIGIEARSVESSKFKGYEDRYTIAGAYWPPQFAIMDGETL  141 (426)
T ss_dssp             SSEEEEEECTTSCEEEEEETTSEEEEEETTSSSCEEEEEEECCSEEEEEEECCSTTCTTTEEEEEEEESSEEEEEETTTC
T ss_pred             CCeeEEEECCCCCEEEEEeCCCCEEEEEccCCceeEEEEEeCCCCCcceEEeeeecCCCCEEEEeecCCCeEEEEcCCcc
Confidence            4689999999995 77887888899998 345422211  1112233   1445568999767776444 455666 555


Q ss_pred             -cEEEEe-cc---CCC---cccCCccEEEcCCCc-EEEEeCCCCCCcccccccccccCCCceEEEEeCCCCeeEE--eec
Q 026118           81 -VTVLVS-QF---NGS---QLRFANDVIEASDGS-LYFTVSSTKFTPAEYYLDLVSGEPHGVLLKYDPSTNQTSL--VLD  149 (243)
Q Consensus        81 -~~~~~~-~~---~~~---~~~~~~~l~~d~~G~-l~v~~~~~~~~~~~~~~~~~~~~~~g~v~~~~~~~~~~~~--~~~  149 (243)
                       ...... ..   ...   .......++..+++. +|++..                 ..+.+..++........  ...
T Consensus       142 ~~~~~~~~~~~~~~~~~~~~~~~~~~i~~s~d~~~~~~~~~-----------------~~~~i~~~~~~~~~~~~~~~~~  204 (426)
T d1hzua2         142 EPKQIVSTRGMTVDTQTYHPEPRVAAIIASHEHPEFIVNVK-----------------ETGKVLLVNYKDIDNLTVTSIG  204 (426)
T ss_dssp             CEEEEEECCEECSSSCCEESCCCEEEEEECSSSSEEEEEET-----------------TTTEEEEEECSSSSSCEEEEEE
T ss_pred             ceeEEeeccCCCccceeecCCCceeEEEECCCCCEEEEecC-----------------CCCeEEEEEeccccceeeEEec
Confidence             332221 10   000   011223345566665 333322                 23455555544333211  223


Q ss_pred             cccccceEEEcCCCCEEEEEEcCCCeEEEEEeec
Q 026118          150 GLYFANGVALSEDERFLVVCESWKFRCVKHFLKV  183 (243)
Q Consensus       150 ~~~~~~gi~~~~dg~~l~v~~~~~~~i~~~~~~~  183 (243)
                      ....+.++++++++++++++....+.+..++...
T Consensus       205 ~~~~~~~~~~~~~g~~~~~a~~~~~~~~~~~~~~  238 (426)
T d1hzua2         205 AAPFLADGGWDSSHRYFMTAANNSNKVAVIDSKD  238 (426)
T ss_dssp             CCSSEEEEEECTTSCEEEEEETTCSEEEEEETTT
T ss_pred             cCCccEeeeECCCCcEEEeeeecccceeeeeccc
Confidence            4467889999999999999988888888887654

>d1qnia2 b.69.3.1 (A:10-450) Nitrous oxide reductase, N-terminal domain {Pseudomonas nautica [TaxId: 2743]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Nitrous oxide reductase, N-terminal domain
family: Nitrous oxide reductase, N-terminal domain
domain: Nitrous oxide reductase, N-terminal domain
species: Pseudomonas nautica [TaxId: 2743]

Probab=98.34  E-value=4e-05  Score=62.24  Aligned_cols=112  Identities=6%  Similarity=-0.023  Sum_probs=68.5

Q ss_pred             ccCCCEEEEEeCC-CcEEEEe-cCC-cEEEEeccCCCcccCCccEEEcCCCc-EEEEeCCCCCCccccc--ccccccCCC
Q 026118           58 TKENNVIIVCDSQ-QGLLKVS-EEG-VTVLVSQFNGSQLRFANDVIEASDGS-LYFTVSSTKFTPAEYY--LDLVSGEPH  131 (243)
Q Consensus        58 ~~~g~l~~v~~~~-~gl~~~~-~~g-~~~~~~~~~~~~~~~~~~l~~d~~G~-l~v~~~~~~~~~~~~~--~~~~~~~~~  131 (243)
                      .+||+.|||.+.. ..|.++| .++ ...+...+.+   ..+.+++++++|+ +|++... ++......  ..+......
T Consensus        80 tpDGr~lfV~d~~~~rVavIDl~t~k~~~ii~iP~g---~gphgi~~spdg~t~YV~~~~-~~~v~~~~dg~~~~~~~~~  155 (441)
T d1qnia2          80 RYDGKYLFINDKANTRVARIRLDIMKTDKITHIPNV---QAIHGLRLQKVPKTNYVFCNA-EFVIPQPNDGTDFSLDNSY  155 (441)
T ss_dssp             EEEEEEEEEEETTTTEEEEEETTTTEEEEEEECTTC---CCEEEEEECCSSBCCEEEEEE-CSCEESSCSSSCCCGGGEE
T ss_pred             cCCCCEEEEEcCCCCEEEEEECCCCcEeeEEecCCC---CCccceEEeccCCEEEEEecc-CCcccccCccccccccccc
Confidence            4789988999865 4688999 666 4444433222   4678999999986 5766432 12211000  001111122


Q ss_pred             ceEEEEeCCCCeeEEeeccccccceEEEcCCCCEEEEEEcCC
Q 026118          132 GVLLKYDPSTNQTSLVLDGLYFANGVALSEDERFLVVCESWK  173 (243)
Q Consensus       132 g~v~~~~~~~~~~~~~~~~~~~~~gi~~~~dg~~l~v~~~~~  173 (243)
                      ..+..+|+.+.+..........+.+++++++|+++|++....
T Consensus       156 ~~~~~iD~~t~~v~~qI~v~~~p~~v~~spdGk~a~vt~~ns  197 (441)
T d1qnia2         156 TMFTAIDAETMDVAWQVIVDGNLDNTDADYTGKYATSTCYNS  197 (441)
T ss_dssp             EEEEEEETTTCSEEEEEEESSCCCCEEECSSSSEEEEEESCT
T ss_pred             ceEEeecCccceeeEEEecCCCccceEECCCCCEEEEEecCC
Confidence            345668888766543333345688999999999999997654

>d1pbyb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Quinohemoprotein amine dehydrogenase B chain
domain: Quinohemoprotein amine dehydrogenase B chain
species: Paracoccus denitrificans [TaxId: 266]

Probab=98.31  E-value=3.8e-05  Score=58.97  Aligned_cols=128  Identities=26%  Similarity=0.198  Sum_probs=79.9

Q ss_pred             EEEEEeCCCcEEEEe-cCC-c-EEEEeccCCCcccCCccEEEcCCCc-EEEEeCCCCCCcccccccccccCCCceEEEEe
Q 026118           63 VIIVCDSQQGLLKVS-EEG-V-TVLVSQFNGSQLRFANDVIEASDGS-LYFTVSSTKFTPAEYYLDLVSGEPHGVLLKYD  138 (243)
Q Consensus        63 l~~v~~~~~gl~~~~-~~g-~-~~~~~~~~~~~~~~~~~l~~d~~G~-l~v~~~~~~~~~~~~~~~~~~~~~~g~v~~~~  138 (243)
                      +++++...+.|..+| .++ . ..+....   ....|.+++++|||+ +|++.+.                 .+.|+.+|
T Consensus         3 ~~vt~~~d~~v~v~D~~s~~~~~~i~~~~---~~~~~~~i~~spDg~~l~v~~~~-----------------~~~v~v~D   62 (337)
T d1pbyb_           3 YILAPARPDKLVVIDTEKMAVDKVITIAD---AGPTPMVPMVAPGGRIAYATVNK-----------------SESLVKID   62 (337)
T ss_dssp             EEEEEETTTEEEEEETTTTEEEEEEECTT---CTTCCCCEEECTTSSEEEEEETT-----------------TTEEEEEE
T ss_pred             EEEEEcCCCEEEEEECCCCeEEEEEECCC---CCCCccEEEECCCCCEEEEEECC-----------------CCeEEEEE
Confidence            335666567899999 666 2 2232211   124577899999997 5666432                 46799999


Q ss_pred             CCCCeeEEeecc------ccccceEEEcCCCCEEEEEEcC-----------CCeEEEEEeecCCCcceEEeccCCCCCCC
Q 026118          139 PSTNQTSLVLDG------LYFANGVALSEDERFLVVCESW-----------KFRCVKHFLKVSGRTDREIFIDNLPGGPD  201 (243)
Q Consensus       139 ~~~~~~~~~~~~------~~~~~gi~~~~dg~~l~v~~~~-----------~~~i~~~~~~~~~~~~~~~~~~~~~~~~~  201 (243)
                      ..+++.......      ...+.+++++++++++|++...           ...+..++....  .....+  .....+.
T Consensus        63 ~~t~~~~~~~~~~~~~~~~~~~~~v~~s~dg~~l~~~~~~~~~~~~~~~~~~~~~~~~d~~~~--~~~~~~--~~~~~~~  138 (337)
T d1pbyb_          63 LVTGETLGRIDLSTPEERVKSLFGAALSPDGKTLAIYESPVRLELTHFEVQPTRVALYDAETL--SRRKAF--EAPRQIT  138 (337)
T ss_dssp             TTTCCEEEEEECCBTTEEEECTTCEEECTTSSEEEEEEEEEEECSSCEEECCCEEEEEETTTT--EEEEEE--ECCSSCC
T ss_pred             CCCCcEEEEEecCCCcccccceeeEEEcCCCcEEEEeecCCcceeeeccccccceeeccccCC--eEEEec--cccCCce
Confidence            998876543211      2356789999999999988642           234444544321  112222  1234688


Q ss_pred             ceEECCCCC-EEEE
Q 026118          202 NVNLARDGS-FWIS  214 (243)
Q Consensus       202 ~i~~d~~G~-lwv~  214 (243)
                      +++++++|+ +|++
T Consensus       139 ~~~~s~dg~~l~~~  152 (337)
T d1pbyb_         139 MLAWARDGSKLYGL  152 (337)
T ss_dssp             CEEECTTSSCEEEE
T ss_pred             EEEEcCCCCEEEEE
Confidence            899999997 5554

>d1erja_ b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Tup1, C-terminal domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=98.19  E-value=0.00043  Score=54.17  Aligned_cols=182  Identities=13%  Similarity=0.042  Sum_probs=100.7

Q ss_pred             cccEEEcCCCcEEEEeCCCcEEEEc-cCCceeE-eccc-----------------CCccccceEEccCCCEEEEEeCCCc
Q 026118           12 PEDVSVDGNGVLYTATGDGWIKRMH-PNGTWED-WHQV-----------------GSQSLLGLTTTKENNVIIVCDSQQG   72 (243)
Q Consensus        12 p~~i~~d~~g~l~~~~~~~~i~~~~-~~g~~~~-~~~~-----------------~~~~~~~i~~~~~g~l~~v~~~~~g   72 (243)
                      -.+|+++++|.+.++..++.|..++ .+++... +...                 ......+++++++|++|.++...+-
T Consensus        65 V~~l~fs~dg~~lasg~d~~i~iW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~l~~s~~~~~l~s~~~dg~  144 (388)
T d1erja_          65 VCCVKFSNDGEYLATGCNKTTQVYRVSDGSLVARLSDDSAANKDPENLNTSSSPSSDLYIRSVCFSPDGKFLATGAEDRL  144 (388)
T ss_dssp             CCEEEECTTSSEEEEECBSCEEEEETTTCCEEEEECC-----------------CCCCBEEEEEECTTSSEEEEEETTSC
T ss_pred             EEEEEECCCCCEEEEEeCCeEEEEEecccceEeeecccccccccccccccccccCCCCCEEEEEECCCCCcceecccccc
Confidence            3578999999866555577888888 3444321 1100                 0111226899999998666665555


Q ss_pred             EEEEe-cCC-cEEEEeccCCCcccCCccEEEcCCCcEEEEeCCCCCCcccccccccccCCCceEEEEeCCCCeeEEeecc
Q 026118           73 LLKVS-EEG-VTVLVSQFNGSQLRFANDVIEASDGSLYFTVSSTKFTPAEYYLDLVSGEPHGVLLKYDPSTNQTSLVLDG  150 (243)
Q Consensus        73 l~~~~-~~g-~~~~~~~~~~~~~~~~~~l~~d~~G~l~v~~~~~~~~~~~~~~~~~~~~~~g~v~~~~~~~~~~~~~~~~  150 (243)
                      +..++ ..+ ......   + ....+.++...+++...++.+                 ..+.+..++..+.........
T Consensus       145 v~i~~~~~~~~~~~~~---~-h~~~v~~~~~~~~~~~~~~~~-----------------~~~~i~~~d~~~~~~~~~~~~  203 (388)
T d1erja_         145 IRIWDIENRKIVMILQ---G-HEQDIYSLDYFPSGDKLVSGS-----------------GDRTVRIWDLRTGQCSLTLSI  203 (388)
T ss_dssp             EEEEETTTTEEEEEEC---C-CSSCEEEEEECTTSSEEEEEE-----------------TTSEEEEEETTTTEEEEEEEC
T ss_pred             cccccccccccccccc---c-ccccccccccccccccccccc-----------------cceeeeeeecccccccccccc
Confidence            66666 455 222111   1 123456778888877555422                 235677788876655444333


Q ss_pred             ccccceEEEcC-CCCEEEEEEcCCCeEEEEEeecCCCcceEEecc------CCCCCCCceEECCCCCEEEEEec
Q 026118          151 LYFANGVALSE-DERFLVVCESWKFRCVKHFLKVSGRTDREIFID------NLPGGPDNVNLARDGSFWISIIK  217 (243)
Q Consensus       151 ~~~~~gi~~~~-dg~~l~v~~~~~~~i~~~~~~~~~~~~~~~~~~------~~~~~~~~i~~d~~G~lwv~~~~  217 (243)
                      ......+.+.+ +++.|+.+ ..++.|..++......  ...+..      ........++++++|++.++...
T Consensus       204 ~~~~~~~~~~~~~~~~l~~~-~~d~~i~i~~~~~~~~--~~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~~~  274 (388)
T d1erja_         204 EDGVTTVAVSPGDGKYIAAG-SLDRAVRVWDSETGFL--VERLDSENESGTGHKDSVYSVVFTRDGQSVVSGSL  274 (388)
T ss_dssp             SSCEEEEEECSTTCCEEEEE-ETTSCEEEEETTTCCE--EEEEC------CCCSSCEEEEEECTTSSEEEEEET
T ss_pred             ccccccccccCCCCCeEEEE-cCCCeEEEeecccCcc--ceeeccccccccCCCCCEEEEEECCCCCEEEEEEC
Confidence            33334445544 77745444 4567888888754321  111110      01122445888888886554433

>d1crua_ b.68.2.1 (A:) Soluble quinoprotein glucose dehydrogenase {Acinetobacter calcoaceticus [TaxId: 471]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Soluble quinoprotein glucose dehydrogenase
family: Soluble quinoprotein glucose dehydrogenase
domain: Soluble quinoprotein glucose dehydrogenase
species: Acinetobacter calcoaceticus [TaxId: 471]

Probab=98.16  E-value=4.5e-05  Score=62.42  Aligned_cols=168  Identities=12%  Similarity=0.070  Sum_probs=92.4

Q ss_pred             ceeEecccCCccccceEEccCCCEEEEEeCC-CcEEEEe-cCC-cEEEEeccC----CCcccCCccEEEcCC----CcEE
Q 026118           40 TWEDWHQVGSQSLLGLTTTKENNVIIVCDSQ-QGLLKVS-EEG-VTVLVSQFN----GSQLRFANDVIEASD----GSLY  108 (243)
Q Consensus        40 ~~~~~~~~~~~~~~~i~~~~~g~l~~v~~~~-~gl~~~~-~~g-~~~~~~~~~----~~~~~~~~~l~~d~~----G~l~  108 (243)
                      +++.+......|. +|++.+||++ ||+... +.|++++ .++ .+.+.....    .......-+|+++|+    +.+|
T Consensus        18 ~~~~ia~~L~~P~-~la~~pdg~l-lVter~~G~i~~v~~~~g~~~~i~~~~~~~~~~~ge~GLLgia~~Pdf~~n~~iY   95 (450)
T d1crua_          18 DKKVILSNLNKPH-ALLWGPDNQI-WLTERATGKILRVNPESGSVKTVFQVPEIVNDADGQNGLLGFAFHPDFKNNPYIY   95 (450)
T ss_dssp             CEEEEECCCSSEE-EEEECTTSCE-EEEETTTCEEEEECTTTCCEEEEEECTTCCCCTTSSCSEEEEEECTTTTTSCEEE
T ss_pred             EEEEEECCCCCce-EEEEeCCCeE-EEEEecCCEEEEEECCCCcEeecccCCccccccCCCCceeeEEeCCCCccCCEEE
Confidence            3455555557889 9999999999 898854 4588888 556 554443221    111234457899885    6688


Q ss_pred             EEeCCCCCCcccccccccccC-CCceEEE--EeCCCCeeEE---eec-----cccccceEEEcCCCCEEEEEEcC-----
Q 026118          109 FTVSSTKFTPAEYYLDLVSGE-PHGVLLK--YDPSTNQTSL---VLD-----GLYFANGVALSEDERFLVVCESW-----  172 (243)
Q Consensus       109 v~~~~~~~~~~~~~~~~~~~~-~~g~v~~--~~~~~~~~~~---~~~-----~~~~~~gi~~~~dg~~l~v~~~~-----  172 (243)
                      ++-......  .    ..... ....+.+  ++........   +..     .......|+|++||+ ||++.-.     
T Consensus        96 vsyt~~~~~--~----~~~~~~~~~~v~~~~~~~~~~~~~~~~~i~~~~p~~~~H~gg~l~fgpDG~-LYvs~Gd~~~~~  168 (450)
T d1crua_          96 ISGTFKNPK--S----TDKELPNQTIIRRYTYNKSTDTLEKPVDLLAGLPSSKDHQSGRLVIGPDQK-IYYTIGDQGRNQ  168 (450)
T ss_dssp             EEEEEECTT--C------CCSCEEEEEEEEEEETTTTEEEEEEEEEEEECCCSSCCEEEEEECTTSC-EEEEECCTTTTS
T ss_pred             EEEecCCCC--C----cccccccceEEEeeecccccccccceEEEeecccccccccccceeEcCCCC-EEEEecCCCccc
Confidence            862110000  0    00000 0112333  3333222211   111     112335799999998 9997431     


Q ss_pred             ---------------------------CCeEEEEEeecCCCc--------ceEEeccCCCCCCCceEECCCCCEEEEEec
Q 026118          173 ---------------------------KFRCVKHFLKVSGRT--------DREIFIDNLPGGPDNVNLARDGSFWISIIK  217 (243)
Q Consensus       173 ---------------------------~~~i~~~~~~~~~~~--------~~~~~~~~~~~~~~~i~~d~~G~lwv~~~~  217 (243)
                                                 .+.|.|++.++....        ..+++..+. .-|-+|++|++|+||++.+.
T Consensus       169 ~~~~~~~~~~~~~~~~~~~~~q~~~~~~Gkilri~~dg~~~~dnP~~~~~~~ei~a~G~-RNp~g~~~~p~g~l~~~e~G  247 (450)
T d1crua_         169 LAYLFLPNQAQHTPTQQELNGKDYHTYMGKVLRLNLDGSIPKDNPSFNGVVSHIYTLGH-RNPQGLAFTPNGKLLQSEQG  247 (450)
T ss_dssp             GGGTTSCCCTTCCCCHHHHHTTCCTTCSSEEEEECTTSCCCTTCCEETTEECSEEEBCC-SEEEEEEECTTSCEEEEEEC
T ss_pred             ccccccccccccCcccccccccccccccCceEEeeccccccccccccccccceEEEecc-ccccceeecccceeeecccc
Confidence                                       267888887643111        112333221 12677999999999999875

>d1tbga_ b.69.4.1 (A:) beta1-subunit of the signal-transducing G protein heterotrimer {Cow (Bos taurus) [TaxId: 9913]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: beta1-subunit of the signal-transducing G protein heterotrimer
species: Cow (Bos taurus) [TaxId: 9913]

Probab=98.13  E-value=0.00063  Score=51.78  Aligned_cols=202  Identities=12%  Similarity=0.045  Sum_probs=97.6

Q ss_pred             CcccEEEcCCCcEE-EEeCCCcEEEEc-cCCceeEecccCCccccceEEccCCCEEEEEeCCCcEEEEe-cCC---cEEE
Q 026118           11 HPEDVSVDGNGVLY-TATGDGWIKRMH-PNGTWEDWHQVGSQSLLGLTTTKENNVIIVCDSQQGLLKVS-EEG---VTVL   84 (243)
Q Consensus        11 ~p~~i~~d~~g~l~-~~~~~~~i~~~~-~~g~~~~~~~~~~~~~~~i~~~~~g~l~~v~~~~~gl~~~~-~~g---~~~~   84 (243)
                      .-.+|++.+++.+. .+..++.|..++ .+++..........+...+++++++++++++....-+..++ ...   ....
T Consensus        57 ~I~~l~~s~~~~~l~sgs~Dg~v~iWd~~~~~~~~~~~~~~~~v~~v~~~~~~~~l~~~~~d~~i~~~~~~~~~~~~~~~  136 (340)
T d1tbga_          57 KIYAMHWGTDSRLLVSASQDGKLIIWDSYTTNKVHAIPLRSSWVMTCAYAPSGNYVACGGLDNICSIYNLKTREGNVRVS  136 (340)
T ss_dssp             CEEEEEECTTSSEEEEEETTTEEEEEETTTTEEEEEEECSCSCEEEEEECTTSSEEEEEETTCCEEEEESSSSCSCCCEE
T ss_pred             CEEEEEECCCCCEEEEEECCCceeeeecccceeEEEEecccccEEeeEeeccceeeeeecccceeecccccccccccccc
Confidence            34578999988644 555889999999 44543322221123333889999999856666544455554 221   1111


Q ss_pred             EeccCCCcccCCcc---------EEEcCCCcEEEEeCCCC----------CCccc-----ccccccccCCCceEEEEeCC
Q 026118           85 VSQFNGSQLRFAND---------VIEASDGSLYFTVSSTK----------FTPAE-----YYLDLVSGEPHGVLLKYDPS  140 (243)
Q Consensus        85 ~~~~~~~~~~~~~~---------l~~d~~G~l~v~~~~~~----------~~~~~-----~~~~~~~~~~~g~v~~~~~~  140 (243)
                      .. ..+.. .....         .....+...........          .....     .......+...+.|..+|..
T Consensus       137 ~~-~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~v~i~d~~  214 (340)
T d1tbga_         137 RE-LAGHT-GYLSCCRFLDDNQIVTSSGDTTCALWDIETGQQTTTFTGHTGDVMSLSLAPDTRLFVSGACDASAKLWDVR  214 (340)
T ss_dssp             EE-ECCCS-SCEEEEEEEETTEEEEEETTTEEEEEETTTTEEEEEEECCSSCEEEEEECTTSSEEEEEETTTEEEEEETT
T ss_pred             ee-ccccc-ccccccccccccccccccccccccccccccccccccccccceeEeeeccccccceeEEeecCceEEEEECC
Confidence            10 00000 00000         00011111111100000          00000     00001112234567778887


Q ss_pred             CCeeEEeecc-ccccceEEEcCCCCEEEEEEcCCCeEEEEEeecCCCcceEEecc-CCCCCCCceEECCCCCEEEEEec
Q 026118          141 TNQTSLVLDG-LYFANGVALSEDERFLVVCESWKFRCVKHFLKVSGRTDREIFID-NLPGGPDNVNLARDGSFWISIIK  217 (243)
Q Consensus       141 ~~~~~~~~~~-~~~~~gi~~~~dg~~l~v~~~~~~~i~~~~~~~~~~~~~~~~~~-~~~~~~~~i~~d~~G~lwv~~~~  217 (243)
                      +++....... ....+.++++|++++|+++ ..++.|..++....  .....+.. ........++++++|++.++...
T Consensus       215 ~~~~~~~~~~h~~~i~~v~~~p~~~~l~s~-s~d~~i~~~~~~~~--~~~~~~~~~~~~~~i~~~~~s~~~~~l~~g~~  290 (340)
T d1tbga_         215 EGMCRQTFTGHESDINAICFFPNGNAFATG-SDDATCRLFDLRAD--QELMTYSHDNIICGITSVSFSKSGRLLLAGYD  290 (340)
T ss_dssp             TTEEEEEECCCSSCEEEEEECTTSSEEEEE-ETTSCEEEEETTTT--EEEEEECCTTCCSCEEEEEECSSSCEEEEEET
T ss_pred             CCcEEEEEeCCCCCeEEEEECCCCCEEEEE-eCCCeEEEEeeccc--ccccccccccccCceEEEEECCCCCEEEEEEC
Confidence            7765543332 3445789999999966555 45678888886542  11222211 11122345788888885554443

>d1mdah_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Methylamine dehydrogenase, H-chain
domain: Methylamine dehydrogenase, H-chain
species: Paracoccus denitrificans [TaxId: 266]

Probab=98.10  E-value=8.2e-05  Score=58.64  Aligned_cols=117  Identities=9%  Similarity=-0.067  Sum_probs=73.9

Q ss_pred             ceEEccCCCEEEEEeCC-----CcEEEEe-cCC-cEEEEeccCCCcccCCccEEEcCCCc-EEEEeCCCCCCcccccccc
Q 026118           54 GLTTTKENNVIIVCDSQ-----QGLLKVS-EEG-VTVLVSQFNGSQLRFANDVIEASDGS-LYFTVSSTKFTPAEYYLDL  125 (243)
Q Consensus        54 ~i~~~~~g~l~~v~~~~-----~gl~~~~-~~g-~~~~~~~~~~~~~~~~~~l~~d~~G~-l~v~~~~~~~~~~~~~~~~  125 (243)
                      .++..++++..|++...     ..++.+| .++ ......  .+    +...+++.|||+ +|+++....        ..
T Consensus        24 ~~a~~~~~~~~~v~~~~~~~g~~~~~~~d~~~~~~~~~~~--~~----~~~~~a~spDg~~i~~~~~~~~--------~~   89 (368)
T d1mdah_          24 DHGPGAISRRSHITLPAYFAGTTENWVSCAGCGVTLGHSL--GA----FLSLAVAGHSGSDFALASTSFA--------RS   89 (368)
T ss_dssp             CCCCCCCTTEEEEEECTTTCSSEEEEEEETTTTEEEEEEE--EC----TTCEEEECTTSSCEEEEEEEET--------TT
T ss_pred             ccccCCCCcceeEEeeccCCCcceEEEEeCCCCcEEEEEe--CC----CCCcceECCCCCEEEEEcccCc--------cc
Confidence            45666777765666421     2488888 555 222211  11    223678999986 777653200        01


Q ss_pred             cccCCCceEEEEeCCCCeeEEeec--------cccccceEEEcCCCCEEEEEEcCCCeEEEEEeecC
Q 026118          126 VSGEPHGVLLKYDPSTNQTSLVLD--------GLYFANGVALSEDERFLVVCESWKFRCVKHFLKVS  184 (243)
Q Consensus       126 ~~~~~~g~v~~~~~~~~~~~~~~~--------~~~~~~gi~~~~dg~~l~v~~~~~~~i~~~~~~~~  184 (243)
                      ..+...+.|..+|+.+++......        ....|.+++|++||++||+++...+.+..+|....
T Consensus        90 ~~g~~d~~v~v~D~~t~~~~~~i~~p~~~~~~~g~~p~~~a~SpDGk~l~va~~~~~~v~~~d~~~~  156 (368)
T d1mdah_          90 AKGKRTDYVEVFDPVTFLPIADIELPDAPRFSVGPRVHIIGNCASSACLLFFLFGSSAAAGLSVPGA  156 (368)
T ss_dssp             TSSSEEEEEEEECTTTCCEEEEEEETTSCSCCBSCCTTSEEECTTSSCEEEEECSSSCEEEEEETTT
T ss_pred             cccccCCeEEEEECCCCcEeeeecCCccceecccCCccceEECCCCCEEEEEeCCCCeEEEEECCCC
Confidence            112234569999999877554321        12457789999999999999887889999998754

>d1pgua2 b.69.4.1 (A:327-613) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=98.04  E-value=0.00081  Score=50.37  Aligned_cols=184  Identities=13%  Similarity=0.058  Sum_probs=95.7

Q ss_pred             CcccEEEcCCCcEEEEeCCCcEEEEc-cCCceeEecccCCccccceEEccCCCEEEEEeCCCc-EEEEecCCcEEEEecc
Q 026118           11 HPEDVSVDGNGVLYTATGDGWIKRMH-PNGTWEDWHQVGSQSLLGLTTTKENNVIIVCDSQQG-LLKVSEEGVTVLVSQF   88 (243)
Q Consensus        11 ~p~~i~~d~~g~l~~~~~~~~i~~~~-~~g~~~~~~~~~~~~~~~i~~~~~g~l~~v~~~~~g-l~~~~~~g~~~~~~~~   88 (243)
                      .|..++..+++.+.+...++.+..++ ..+........  ... ..++.+++..+.++....+ +..++......... .
T Consensus        82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~-~~~~~~~~~~~~v~~~~~~~v~~~~~~~~~~~~~-~  157 (287)
T d1pgua2          82 QPKVASANNDGFTAVLTNDDDLLILQSFTGDIIKSVRL--NSP-GSAVSLSQNYVAVGLEEGNTIQVFKLSDLEVSFD-L  157 (287)
T ss_dssp             CEEEEEECSSSEEEEEETTSEEEEEETTTCCEEEEEEC--SSC-EEEEEECSSEEEEEETTTSCEEEEETTEEEEEEE-C
T ss_pred             ceeeeeeccCCceEEEeecccceeeeccceeeeeeccc--cce-eeeeeccCcceeeeccccceeeeeeccccceeee-e
Confidence            45566666677666665556666666 33433222221  122 3455566666466665444 44555322111111 1


Q ss_pred             CCCcccCCccEEEcCCCcEEEEeCCCCCCcccccccccccCCCceEEEEeCCCCeeEEe--eccccccceEEEcCCC---
Q 026118           89 NGSQLRFANDVIEASDGSLYFTVSSTKFTPAEYYLDLVSGEPHGVLLKYDPSTNQTSLV--LDGLYFANGVALSEDE---  163 (243)
Q Consensus        89 ~~~~~~~~~~l~~d~~G~l~v~~~~~~~~~~~~~~~~~~~~~~g~v~~~~~~~~~~~~~--~~~~~~~~gi~~~~dg---  163 (243)
                      .......+.+++++++|.+.++.+                 ..+.|..+|..+++....  .......+.++++|.+   
T Consensus       158 ~~~~~~~v~~~~~s~~~~~l~~g~-----------------~dg~i~i~d~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~  220 (287)
T d1pgua2         158 KTPLRAKPSYISISPSETYIAAGD-----------------VMGKILLYDLQSREVKTSRWAFRTSKINAISWKPAEKGA  220 (287)
T ss_dssp             SSCCSSCEEEEEECTTSSEEEEEE-----------------TTSCEEEEETTTTEEEECCSCCCSSCEEEEEECCCC---
T ss_pred             eeccCCceeEEEeccCcccccccc-----------------ccccccceeecccccccccccccccccceeeeccccccc
Confidence            111123466889999998666532                 235788888886654332  1112334567776543   


Q ss_pred             -------CEEEEEEcCCCeEEEEEeecCCCcceEEeccCCCCCCCceEECCCCCEEEEEecC
Q 026118          164 -------RFLVVCESWKFRCVKHFLKVSGRTDREIFIDNLPGGPDNVNLARDGSFWISIIKM  218 (243)
Q Consensus       164 -------~~l~v~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~i~~d~~G~lwv~~~~~  218 (243)
                             . ++++...++.|..|++.... .....+ ..-......+++.+++.|.-+..++
T Consensus       221 ~~~~~~~~-~l~sgs~D~~i~iw~~~~~~-~~~~~~-~~h~~~V~~v~~~~~~~l~s~g~D~  279 (287)
T d1pgua2         221 NEEEIEED-LVATGSLDTNIFIYSVKRPM-KIIKAL-NAHKDGVNNLLWETPSTLVSSGADA  279 (287)
T ss_dssp             ---CCSCC-EEEEEETTSCEEEEESSCTT-CCEEET-TSSTTCEEEEEEEETTEEEEEETTS
T ss_pred             ccccCCCC-eeEeecCCCeEEEEECCCCC-eEEEEe-CCCCCCeEEEEECCCCEEEEEECCC
Confidence                   4 44455567889999875421 111221 1122234567777777655544443

>d2bbkh_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Methylamine dehydrogenase, H-chain
domain: Methylamine dehydrogenase, H-chain
species: Paracoccus denitrificans [TaxId: 266]

Probab=97.89  E-value=0.00064  Score=52.49  Aligned_cols=103  Identities=15%  Similarity=0.104  Sum_probs=63.1

Q ss_pred             CccEEEcCCCc-EEEEeCCCCCCcccccccccccCCCceEEEEeCCCCeeEEeeccccccceEEEcCCCCE-EEEEEcCC
Q 026118           96 ANDVIEASDGS-LYFTVSSTKFTPAEYYLDLVSGEPHGVLLKYDPSTNQTSLVLDGLYFANGVALSEDERF-LVVCESWK  173 (243)
Q Consensus        96 ~~~l~~d~~G~-l~v~~~~~~~~~~~~~~~~~~~~~~g~v~~~~~~~~~~~~~~~~~~~~~gi~~~~dg~~-l~v~~~~~  173 (243)
                      ...++++++|. +|++.....        ..........|+.+|..+++..........+.+++++|||+. +|++...+
T Consensus       251 ~~~~~~~~d~~~~~~~~~~~~--------~~~~~~~~~~v~v~d~~t~~~~~~~~~~~~~~~~a~spDG~~~l~v~~~~d  322 (355)
T d2bbkh_         251 WQQVAYHRALDRIYLLVDQRD--------EWRHKTASRFVVVLDAKTGERLAKFEMGHEIDSINVSQDEKPLLYALSTGD  322 (355)
T ss_dssp             SSCEEEETTTTEEEEEEEECC--------TTCTTSCEEEEEEEETTTCCEEEEEEEEEEECEEEECCSSSCEEEEEETTT
T ss_pred             eEEEEEeCCCCeEEEEeccCC--------ceeecCCCCeEEEEeCCCCcEEEEecCCCCEEEEEEcCCCCeEEEEEECCC
Confidence            34578888886 444422100        001112235688999988876544433456789999999985 67777778


Q ss_pred             CeEEEEEeecCCCcceEEeccCCCCCCCceEECCCC
Q 026118          174 FRCVKHFLKVSGRTDREIFIDNLPGGPDNVNLARDG  209 (243)
Q Consensus       174 ~~i~~~~~~~~~~~~~~~~~~~~~~~~~~i~~d~~G  209 (243)
                      +.|..||...++  ..+.+. .....|.-+.+..+|
T Consensus       323 ~~i~v~D~~tg~--~~~~i~-~~G~~p~~i~~~d~~  355 (355)
T d2bbkh_         323 KTLYIHDAESGE--ELRSVN-QLGHGPQVITTADMG  355 (355)
T ss_dssp             TEEEEEETTTCC--EEEEEC-CCCSSCCEEECCCCC
T ss_pred             CEEEEEECCCCC--EEEEEe-CcCCCccEEEeCCCC
Confidence            999999986532  222332 234457777766554

>d1erja_ b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Tup1, C-terminal domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=97.85  E-value=0.0035  Score=48.70  Aligned_cols=149  Identities=17%  Similarity=0.081  Sum_probs=84.9

Q ss_pred             ccEEEcCCCc-EEEEeCCCcEEEEc-cCCceeEecccCCccccceEEccCCCEEEEEeCCCcEEEEe-cCCcEEEEeccC
Q 026118           13 EDVSVDGNGV-LYTATGDGWIKRMH-PNGTWEDWHQVGSQSLLGLTTTKENNVIIVCDSQQGLLKVS-EEGVTVLVSQFN   89 (243)
Q Consensus        13 ~~i~~d~~g~-l~~~~~~~~i~~~~-~~g~~~~~~~~~~~~~~~i~~~~~g~l~~v~~~~~gl~~~~-~~g~~~~~~~~~   89 (243)
                      .+|++.++|. |.++..++.|..++ ..++..........+...+.+.+++..+.++.....+..++ .+..........
T Consensus       125 ~~l~~s~~~~~l~s~~~dg~v~i~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~  204 (388)
T d1erja_         125 RSVCFSPDGKFLATGAEDRLIRIWDIENRKIVMILQGHEQDIYSLDYFPSGDKLVSGSGDRTVRIWDLRTGQCSLTLSIE  204 (388)
T ss_dssp             EEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEEEEECS
T ss_pred             EEEEECCCCCcceecccccccccccccccccccccccccccccccccccccccccccccceeeeeeeccccccccccccc
Confidence            4588888886 44566888898888 34443333221122332778888888756666555566777 444222111111


Q ss_pred             CCcccCCccEEEcC-CCcEEEEeCCCCCCcccccccccccCCCceEEEEeCCCCeeEEeec--------cccccceEEEc
Q 026118           90 GSQLRFANDVIEAS-DGSLYFTVSSTKFTPAEYYLDLVSGEPHGVLLKYDPSTNQTSLVLD--------GLYFANGVALS  160 (243)
Q Consensus        90 ~~~~~~~~~l~~d~-~G~l~v~~~~~~~~~~~~~~~~~~~~~~g~v~~~~~~~~~~~~~~~--------~~~~~~gi~~~  160 (243)
                          .....+++.+ +++++++.+                 ..+.|..++..++.......        .......++++
T Consensus       205 ----~~~~~~~~~~~~~~~l~~~~-----------------~d~~i~i~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s  263 (388)
T d1erja_         205 ----DGVTTVAVSPGDGKYIAAGS-----------------LDRAVRVWDSETGFLVERLDSENESGTGHKDSVYSVVFT  263 (388)
T ss_dssp             ----SCEEEEEECSTTCCEEEEEE-----------------TTSCEEEEETTTCCEEEEEC------CCCSSCEEEEEEC
T ss_pred             ----cccccccccCCCCCeEEEEc-----------------CCCeEEEeecccCccceeeccccccccCCCCCEEEEEEC
Confidence                1222344444 677666522                 23467777777655433211        12235679999


Q ss_pred             CCCCEEEEEEcCCCeEEEEEeec
Q 026118          161 EDERFLVVCESWKFRCVKHFLKV  183 (243)
Q Consensus       161 ~dg~~l~v~~~~~~~i~~~~~~~  183 (243)
                      +++++|+.+ ..++.|..|+...
T Consensus       264 ~~~~~l~s~-~~d~~i~iwd~~~  285 (388)
T d1erja_         264 RDGQSVVSG-SLDRSVKLWNLQN  285 (388)
T ss_dssp             TTSSEEEEE-ETTSEEEEEEC--
T ss_pred             CCCCEEEEE-ECCCcEEEEeccC
Confidence            999966555 4568898888764

>d1fwxa2 b.69.3.1 (A:8-451) Nitrous oxide reductase, N-terminal domain {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Nitrous oxide reductase, N-terminal domain
family: Nitrous oxide reductase, N-terminal domain
domain: Nitrous oxide reductase, N-terminal domain
species: Paracoccus denitrificans [TaxId: 266]

Probab=97.84  E-value=0.00088  Score=53.50  Aligned_cols=207  Identities=12%  Similarity=0.102  Sum_probs=110.5

Q ss_pred             ccCCcccEEEc--CCCc-EEEEe-CCCcEEEEcc-CCceeEeccc--CCccccceEEccCCCEEEEEeC-CC--------
Q 026118            8 IVNHPEDVSVD--GNGV-LYTAT-GDGWIKRMHP-NGTWEDWHQV--GSQSLLGLTTTKENNVIIVCDS-QQ--------   71 (243)
Q Consensus         8 ~~~~p~~i~~d--~~g~-l~~~~-~~~~i~~~~~-~g~~~~~~~~--~~~~~~~i~~~~~g~l~~v~~~-~~--------   71 (243)
                      -..+|+--..|  .||+ ||+.+ .+.+|.+++. .-+...+...  ...+. ++...++++..||... ..        
T Consensus        84 D~HHP~~S~TdGtyDGrylFVNDkan~RVAvIdl~~fkt~kIi~iPn~~~~H-G~r~~~~p~T~YV~~~~e~~vP~pndg  162 (459)
T d1fwxa2          84 DLHHVHMSFTEGKYDGRFLFMNDKANTRVARVRCDVMKCDAILEIPNAKGIH-GLRPQKWPRSNYVFCNGEDETPLVNDG  162 (459)
T ss_dssp             CBCCEEEEEETTEEEEEEEEEEETTTTEEEEEETTTTEEEEEEECSSCCSEE-EEEECCSSBCSEEEEEECSCEESSCSS
T ss_pred             CcCCCcccccCCccceeEEEEEcCCCceEEEEECcceeeeEEEecCCCCCCc-eeecccCCCeEEEEccCccccccCCCC
Confidence            34567433334  2785 88887 7889999994 4444333221  22345 7777665553355531 11        


Q ss_pred             ----------c-EEEEe-cCCcEEEEeccCCCcccCCccEEEcCCCcEEEEeC-CCCCCccccc-----cc---------
Q 026118           72 ----------G-LLKVS-EEGVTVLVSQFNGSQLRFANDVIEASDGSLYFTVS-STKFTPAEYY-----LD---------  124 (243)
Q Consensus        72 ----------g-l~~~~-~~g~~~~~~~~~~~~~~~~~~l~~d~~G~l~v~~~-~~~~~~~~~~-----~~---------  124 (243)
                                + +..+| .+. +.......+   ..+..+.++++|+..++++ ..+-+.....     .+         
T Consensus       163 ~~l~d~~~y~~~~t~ID~~tm-~V~~QV~V~---g~ld~~~~s~dGK~af~TsyNSE~g~~l~e~ta~e~D~i~V~n~~r  238 (459)
T d1fwxa2         163 TNMEDVANYVNVFTAVDADKW-EVAWQVLVS---GNLDNCDADYEGKWAFSTSYNSEKGMTLPEMTAAEMDHIVVFNIAE  238 (459)
T ss_dssp             SSTTCGG-EEEEEEEEETTTT-EEEEEEEES---SCCCCEEECSSSSEEEEEESCTTCCSSHHHHTCCSEEEEEEEEHHH
T ss_pred             ccccchhhcceEEEEEecCCc-eEEEEeeeC---CChhccccCCCCCEEEEEeccccCCcchhhcccccceEEEEechHH
Confidence                      1 33556 333 221111111   2466789999998555543 2222211000     00         


Q ss_pred             ----cccc--CCCceEEEEeCCCC---eeEEeeccccccceEEEcCCCCEEEEEEcCCCeEEEEEeec------CCC-cc
Q 026118          125 ----LVSG--EPHGVLLKYDPSTN---QTSLVLDGLYFANGVALSEDERFLVVCESWKFRCVKHFLKV------SGR-TD  188 (243)
Q Consensus       125 ----~~~~--~~~g~v~~~~~~~~---~~~~~~~~~~~~~gi~~~~dg~~l~v~~~~~~~i~~~~~~~------~~~-~~  188 (243)
                          ...+  ..-+++-.+|....   .+.........|+|+.++|||+++|++...+..+.+||...      ... ..
T Consensus       239 ie~av~~Gk~~eingV~VVD~~~~~~~~v~~yIPVpKsPHGV~vSPDGKyi~VaGKLs~tVSViD~~Ki~~~~~~~~~~~  318 (459)
T d1fwxa2         239 IEKAIAAGDYQELNGVKVVDGRKEASSLFTRYIPIANNPHGCNMAPDKKHLCVAGKLSPTVTVLDVTRFDAVFYENADPR  318 (459)
T ss_dssp             HHHHHHHTCSEEETTEEEEECSGG--CSSEEEEEEESSCCCEEECTTSSEEEEECTTSSBEEEEEGGGHHHHHHSCC-GG
T ss_pred             hHHhhhcCCcEEeCCceeecccccCCcceeEEEecCCCCCceEECCCCCEEEEeCCcCCcEEEEEehhhhhhhcccCCcc
Confidence                0000  11133455665421   22223334467999999999999999999999999999852      111 11


Q ss_pred             eEEeccCCCC-CCCceEECCCCCEEEEEecCC
Q 026118          189 REIFIDNLPG-GPDNVNLARDGSFWISIIKMD  219 (243)
Q Consensus       189 ~~~~~~~~~~-~~~~i~~d~~G~lwv~~~~~~  219 (243)
                      ..+......| .|---++|.+|+.|.+.+-.+
T Consensus       319 ~~~~~e~elglgPLht~fd~~g~aytslfids  350 (459)
T d1fwxa2         319 SAVVAEPELGLGPLHTAFDGRGNAYTSLFLDS  350 (459)
T ss_dssp             GGEEECCBCCSCEEEEEECTTSEEEEEETTTT
T ss_pred             ccEEeecccCcCccccccCCCceEEEEeeccc
Confidence            1111111112 355578899999999876554

>d1pgua1 b.69.4.1 (A:2-326) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=97.82  E-value=0.0035  Score=48.04  Aligned_cols=188  Identities=10%  Similarity=-0.011  Sum_probs=94.3

Q ss_pred             CcccEEEcCCCcEEE-EeCCCc-EEEEcc-CCc---eeEecccCCccccceEEcc--CCCEEEEEeCCCcEEEEe-cCC-
Q 026118           11 HPEDVSVDGNGVLYT-ATGDGW-IKRMHP-NGT---WEDWHQVGSQSLLGLTTTK--ENNVIIVCDSQQGLLKVS-EEG-   80 (243)
Q Consensus        11 ~p~~i~~d~~g~l~~-~~~~~~-i~~~~~-~g~---~~~~~~~~~~~~~~i~~~~--~g~l~~v~~~~~gl~~~~-~~g-   80 (243)
                      .|.+++++++|...+ +..+.. |+.++. ..+   ...+......+...++++|  +|.++..+..++-|..++ ..+ 
T Consensus        19 ~~t~l~~~~~~~~la~~~~~~~~i~~~~~~~~~~~~~~~~~gh~~~~v~~v~fsP~~~g~~lasgs~Dg~i~iWd~~~~~   98 (325)
T d1pgua1          19 FTTHLSYDPTTNAIAYPCGKSAFVRCLDDGDSKVPPVVQFTGHGSSVVTTVKFSPIKGSQYLCSGDESGKVIVWGWTFDK   98 (325)
T ss_dssp             CCCCCEEETTTTEEEEEETTEEEEEECCSSCCSSCSEEEECTTTTSCEEEEEECSSTTCCEEEEEETTSEEEEEEEEEEG
T ss_pred             CeEEEEECCCCCEEEEEeCCCEEEEEEeCCCCCccceEEEeCCCCCCEEEEEEeeCCCCCEEEEEeCCCCEEEeeecCCc
Confidence            567899999886543 433332 334442 222   2222211123343788876  556634444444455555 322 


Q ss_pred             -cEEE----EeccCCCcccCCccEEEcCCCcEEEEeCCCCCCcccccccccccCCCceEEEEeCCCCeeEEeec-ccccc
Q 026118           81 -VTVL----VSQFNGSQLRFANDVIEASDGSLYFTVSSTKFTPAEYYLDLVSGEPHGVLLKYDPSTNQTSLVLD-GLYFA  154 (243)
Q Consensus        81 -~~~~----~~~~~~~~~~~~~~l~~d~~G~l~v~~~~~~~~~~~~~~~~~~~~~~g~v~~~~~~~~~~~~~~~-~~~~~  154 (243)
                       ...+    ...... ....+.+++++++|+..++...               .....+..++.++++...... .....
T Consensus        99 ~~~~~~~~~~~~~~~-~~~~v~~v~~s~~~~~l~~~~~---------------~~~~~~~~~~~~~~~~~~~~~~h~~~v  162 (325)
T d1pgua1          99 ESNSVEVNVKSEFQV-LAGPISDISWDFEGRRLCVVGE---------------GRDNFGVFISWDSGNSLGEVSGHSQRI  162 (325)
T ss_dssp             GGTEEEEEEEEEEEC-CSSCEEEEEECTTSSEEEEEEC---------------CSSCSEEEEETTTCCEEEECCSCSSCE
T ss_pred             ceeeeeccccccccc-ccCcEEEEEECCCCCccceeec---------------cccceEEEEeecccccceeeeeccccc
Confidence             1111    111111 1224567889999986655321               012235556666555433322 23445


Q ss_pred             ceEEEcCCCCEEEEEEcCCCeEEEEEeecCCCcceEEecc--CCCCCCCceEECCC-CCEEEEEe
Q 026118          155 NGVALSEDERFLVVCESWKFRCVKHFLKVSGRTDREIFID--NLPGGPDNVNLARD-GSFWISII  216 (243)
Q Consensus       155 ~gi~~~~dg~~l~v~~~~~~~i~~~~~~~~~~~~~~~~~~--~~~~~~~~i~~d~~-G~lwv~~~  216 (243)
                      +.+++++++..+.++...++.+..|+....  ........  ........+++.++ +.+.++..
T Consensus       163 ~~~~~~~~~~~~~~~~~~d~~v~~~d~~~~--~~~~~~~~~~~~~~~v~~v~~~pd~~~~l~s~~  225 (325)
T d1pgua1         163 NACHLKQSRPMRSMTVGDDGSVVFYQGPPF--KFSASDRTHHKQGSFVRDVEFSPDSGEFVITVG  225 (325)
T ss_dssp             EEEEECSSSSCEEEEEETTTEEEEEETTTB--EEEEEECSSSCTTCCEEEEEECSTTCCEEEEEE
T ss_pred             ccccccccccceEEEeeccccccccccccc--ccceecccccCCCCccEEeeeccccceeccccc
Confidence            779999998866666666788888875421  11111111  11223455777775 45555433

>d1vyhc1 b.69.4.1 (C:92-408) Platelet-activating factor acetylhydrolase IB subunit alpha {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Platelet-activating factor acetylhydrolase IB subunit alpha
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=97.69  E-value=0.0048  Score=45.79  Aligned_cols=150  Identities=11%  Similarity=0.106  Sum_probs=89.1

Q ss_pred             cccEEEcCCCcEE-EEeCCCcEEEEc-cCCcee-EecccCCccccceEEccCCCEEEEEeCCCcEEEEe-cCCcEEEEec
Q 026118           12 PEDVSVDGNGVLY-TATGDGWIKRMH-PNGTWE-DWHQVGSQSLLGLTTTKENNVIIVCDSQQGLLKVS-EEGVTVLVSQ   87 (243)
Q Consensus        12 p~~i~~d~~g~l~-~~~~~~~i~~~~-~~g~~~-~~~~~~~~~~~~i~~~~~g~l~~v~~~~~gl~~~~-~~g~~~~~~~   87 (243)
                      -.+|++.+++.+. .+..++.|..++ .+++.. .+........ .+.+++++.++..+.....+..++ ........  
T Consensus        20 I~~l~~sp~~~~l~s~s~Dg~i~iWd~~~~~~~~~~~~h~~~V~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--   96 (317)
T d1vyhc1          20 VTRVIFHPVFSVMVSASEDATIKVWDYETGDFERTLKGHTDSVQ-DISFDHSGKLLASCSADMTIKLWDFQGFECIRT--   96 (317)
T ss_dssp             EEEEEECSSSSEEEEEESSSCEEEEETTTCCCCEEECCCSSCEE-EEEECTTSSEEEEEETTSCCCEEETTSSCEEEC--
T ss_pred             eEEEEEcCCCCEEEEEeCCCeEEEEECCCCCEEEEEeCCCCcEE-EEeeecccccccccccccccccccccccccccc--
Confidence            4578899988755 445889999998 455433 3322222334 789999999855555444455555 33211111  


Q ss_pred             cCCCcccCCccEEEcCCCcEEEEeCCCCCCcccccccccccCCCceEEEEeCCCCeeEEee-ccccccceEEEcCCCCEE
Q 026118           88 FNGSQLRFANDVIEASDGSLYFTVSSTKFTPAEYYLDLVSGEPHGVLLKYDPSTNQTSLVL-DGLYFANGVALSEDERFL  166 (243)
Q Consensus        88 ~~~~~~~~~~~l~~d~~G~l~v~~~~~~~~~~~~~~~~~~~~~~g~v~~~~~~~~~~~~~~-~~~~~~~gi~~~~dg~~l  166 (243)
                      ... .......+.+.++++..++..                 ..+.+..++..+++..... ........++++++++.+
T Consensus        97 ~~~-~~~~~~~~~~~~~~~~~~~~~-----------------~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l  158 (317)
T d1vyhc1          97 MHG-HDHNVSSVSIMPNGDHIVSAS-----------------RDKTIKMWEVQTGYCVKTFTGHREWVRMVRPNQDGTLI  158 (317)
T ss_dssp             CCC-CSSCEEEEEECSSSSEEEEEE-----------------TTSEEEEEETTTCCEEEEEECCSSCEEEEEECTTSSEE
T ss_pred             ccc-ccccceeeeccCCCceEEeec-----------------cCcceeEeecccceeeeEEccCCCcceeeecccCCCEE
Confidence            111 123345677888887666532                 2346667777766554433 334456778999999955


Q ss_pred             EEEEcCCCeEEEEEeec
Q 026118          167 VVCESWKFRCVKHFLKV  183 (243)
Q Consensus       167 ~v~~~~~~~i~~~~~~~  183 (243)
                      ..+ ..++.|..++...
T Consensus       159 ~~~-~~d~~v~~~~~~~  174 (317)
T d1vyhc1         159 ASC-SNDQTVRVWVVAT  174 (317)
T ss_dssp             EEE-ETTSCEEEEETTT
T ss_pred             EEE-eCCCeEEEEeecc
Confidence            544 4567788877653

>d1v04a_ b.68.6.2 (A:) Serum paraoxonase/arylesterase 1, PON1 {Rabit (Oryctolagus cuniculus) [TaxId: 9986]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: Serum paraoxonase/arylesterase 1, PON1
domain: Serum paraoxonase/arylesterase 1, PON1
species: Rabit (Oryctolagus cuniculus) [TaxId: 9986]

Probab=97.63  E-value=0.00071  Score=52.97  Aligned_cols=98  Identities=9%  Similarity=0.138  Sum_probs=64.3

Q ss_pred             cCCcccEEEcCCCcEEEEeC------------------CCcEEEEccCCceeEecccCCccccceEEccCCCEEEEEeCC
Q 026118            9 VNHPEDVSVDGNGVLYTATG------------------DGWIKRMHPNGTWEDWHQVGSQSLLGLTTTKENNVIIVCDSQ   70 (243)
Q Consensus         9 ~~~p~~i~~d~~g~l~~~~~------------------~~~i~~~~~~g~~~~~~~~~~~~~~~i~~~~~g~l~~v~~~~   70 (243)
                      +..|..|++.++|.+|+++.                  .+.++.+++ ++.+........|+ ||++++|++.|||+...
T Consensus       149 ~~~pNDv~~~~~g~fy~Tnd~~~~~~~~~~~e~~~~~~~g~v~~~~~-~~~~~~~~~l~~pN-GI~~s~d~~~lyVa~t~  226 (340)
T d1v04a_         149 LPSVNDIVAVGPEHFYATNDHYFIDPYLKSWEMHLGLAWSFVTYYSP-NDVRVVAEGFDFAN-GINISPDGKYVYIAELL  226 (340)
T ss_dssp             CSSEEEEEEEETTEEEEEESCSCCSHHHHHHHHHTTCCCEEEEEECS-SCEEEEEEEESSEE-EEEECTTSSEEEEEEGG
T ss_pred             ccCccceEEecCCCEEEecCccCcChhhhhhhHhhcCCceeEEEEcC-CceEEEcCCCCccc-eeEECCCCCEEEEEeCC
Confidence            56789999999999999952                  123455543 33333333345688 99999999887999865


Q ss_pred             -CcEEEEe--cCC-cEEEEeccCCCcccCCccEEEcC-CCcEEEEe
Q 026118           71 -QGLLKVS--EEG-VTVLVSQFNGSQLRFANDVIEAS-DGSLYFTV  111 (243)
Q Consensus        71 -~gl~~~~--~~g-~~~~~~~~~~~~~~~~~~l~~d~-~G~l~v~~  111 (243)
                       ..|.+++  .++ ...... ..  -...|..+.+|+ +|.+|++.
T Consensus       227 ~~~i~~y~~~~~~~l~~~~~-~~--l~~~pDNi~~d~~~g~lwva~  269 (340)
T d1v04a_         227 AHKIHVYEKHANWTLTPLRV-LS--FDTLVDNISVDPVTGDLWVGC  269 (340)
T ss_dssp             GTEEEEEEECTTSCEEEEEE-EE--CSSEEEEEEECTTTCCEEEEE
T ss_pred             CCeEEEEEeCCCcccceEEE-ec--CCCCCCccEEecCCCEEEEEE
Confidence             4577776  333 222221 11  123577889986 68999984

>d1tl2a_ b.67.1.1 (A:) Tachylectin-2 {Japanese horseshoe crab (Tachypleus tridentatus) [TaxId: 6853]}

class: All beta proteins
fold: 5-bladed beta-propeller
superfamily: Tachylectin-2
family: Tachylectin-2
domain: Tachylectin-2
species: Japanese horseshoe crab (Tachypleus tridentatus) [TaxId: 6853]

Probab=97.62  E-value=0.0039  Score=43.87  Aligned_cols=149  Identities=15%  Similarity=0.073  Sum_probs=89.2

Q ss_pred             CceecccccCCcccEEEcCCCcEEEEeCCCcEEEEcc-C---Cc----eeEecccCCccccceEEccCCCEEEEEeCCCc
Q 026118            1 MIKLGEGIVNHPEDVSVDGNGVLYTATGDGWIKRMHP-N---GT----WEDWHQVGSQSLLGLTTTKENNVIIVCDSQQG   72 (243)
Q Consensus         1 ~~~~~~g~~~~p~~i~~d~~g~l~~~~~~~~i~~~~~-~---g~----~~~~~~~~~~~~~~i~~~~~g~l~~v~~~~~g   72 (243)
                      +.+|+.+...+-.-|++.|+|+||....+ .+|.=.+ .   ..    .+.+-....+...-+.|||+|-| |+++ ...
T Consensus        31 A~~lGk~g~~n~~~i~fsP~G~LyaVr~~-~lY~Gp~~s~~nq~wf~~atrIG~ggWn~FkflffdP~G~L-yaVt-~~~  107 (235)
T d1tl2a_          31 ATLIGKGGWSNFKFLFLSPGGELYGVLND-KIYKGTPPTHDNDNWMGRAKKIGNGGWNQFQFLFFDPNGYL-YAVS-KDK  107 (235)
T ss_dssp             SEEEESSSCTTCSEEEECTTSCEEEEETT-EEEEESCCCSTTCCHHHHCEEEECSCGGGCSEEEECTTSCE-EEEE-TTE
T ss_pred             hhhcCcccccceeEEEECCCCcEEEEECC-eEEECCCCCcchHHHHHhhhhcccCcccceEEEEECCCceE-EEec-Ccc
Confidence            35677776777788999999999987643 6665542 1   11    12221111222324778999988 9988 457


Q ss_pred             EEEEe-cCC-c-------EEEEeccCCCcccCCccEEEcCCCcEEEEeCCCCCCcccccccccccCCCceEEEEeCCCCe
Q 026118           73 LLKVS-EEG-V-------TVLVSQFNGSQLRFANDVIEASDGSLYFTVSSTKFTPAEYYLDLVSGEPHGVLLKYDPSTNQ  143 (243)
Q Consensus        73 l~~~~-~~g-~-------~~~~~~~~~~~~~~~~~l~~d~~G~l~v~~~~~~~~~~~~~~~~~~~~~~g~v~~~~~~~~~  143 (243)
                      |++-. ++. .       ..+..    ..-+...-|-+||+|.||..+++                   .+++-.|-.+.
T Consensus       108 LYr~~pPtn~~q~W~g~a~~vG~----~gw~df~~lFFdP~G~LYaV~~~-------------------~l~k~~pP~~~  164 (235)
T d1tl2a_         108 LYKASPPQSDTDNWIARATEVGS----GGWSGFKFLFFHPNGYLYAVHGQ-------------------QFYKALPPVSN  164 (235)
T ss_dssp             EEEESCCCSTTCCHHHHSEEEEC----SSGGGEEEEEECTTSCEEEEETT-------------------EEEEECCCSST
T ss_pred             eecCCcCcccchhhhhhhhhhcc----CCcCceeEEEECCCceEEEEECC-------------------cEEEcCCCCCC
Confidence            88876 432 1       22211    11123335678999999988543                   57776655432


Q ss_pred             e-------EEee-ccccccceEEEcCCCCEEEEEEcCCCeEEE
Q 026118          144 T-------SLVL-DGLYFANGVALSEDERFLVVCESWKFRCVK  178 (243)
Q Consensus       144 ~-------~~~~-~~~~~~~gi~~~~dg~~l~v~~~~~~~i~~  178 (243)
                      -       +.+- .....+..|.|+++|+ ||...  ++.+++
T Consensus       165 ~d~WL~~st~igr~~w~~~~fi~Fs~dG~-L~~v~--~g~~Y~  204 (235)
T d1tl2a_         165 QDNWLARATKIGQGGWDTFKFLFFSSVGT-LFGVQ--GGKFYE  204 (235)
T ss_dssp             TCCHHHHCEEEESSSGGGEEEEEECTTSC-EEEEE--TTEEEE
T ss_pred             CchhhhhhhhhccCcccCceEEEECCCCc-EEEEe--CCeEEe
Confidence            1       1222 2234467899999999 87763  255554

>d1pgua1 b.69.4.1 (A:2-326) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=97.57  E-value=0.0042  Score=47.57  Aligned_cols=151  Identities=11%  Similarity=0.042  Sum_probs=82.1

Q ss_pred             ccEEEcCCCcEEE-Ee--CCCcEEEEc-cCCce-eEecccCCccccceEEccCCCEEEE-EeCCCcEEEEe-cCC-cEEE
Q 026118           13 EDVSVDGNGVLYT-AT--GDGWIKRMH-PNGTW-EDWHQVGSQSLLGLTTTKENNVIIV-CDSQQGLLKVS-EEG-VTVL   84 (243)
Q Consensus        13 ~~i~~d~~g~l~~-~~--~~~~i~~~~-~~g~~-~~~~~~~~~~~~~i~~~~~g~l~~v-~~~~~gl~~~~-~~g-~~~~   84 (243)
                      .++++.++|...+ +.  .+..+..++ ..++. ..+........ ++++++++..+.+ +..+..+..++ ..+ ...-
T Consensus       119 ~~v~~s~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~-~~~~~~~~~~~~~~~~~d~~v~~~d~~~~~~~~~  197 (325)
T d1pgua1         119 SDISWDFEGRRLCVVGEGRDNFGVFISWDSGNSLGEVSGHSQRIN-ACHLKQSRPMRSMTVGDDGSVVFYQGPPFKFSAS  197 (325)
T ss_dssp             EEEEECTTSSEEEEEECCSSCSEEEEETTTCCEEEECCSCSSCEE-EEEECSSSSCEEEEEETTTEEEEEETTTBEEEEE
T ss_pred             EEEEECCCCCccceeeccccceEEEEeecccccceeeeecccccc-cccccccccceEEEeeccccccccccccccccee
Confidence            3678888886443 32  234455555 33443 22221122234 7889888764233 44344466666 444 2221


Q ss_pred             EeccCCCcccCCccEEEcCC-CcEEEEeCCCCCCcccccccccccCCCceEEEEeCCCCeeEEeecc-ccccceEEEc--
Q 026118           85 VSQFNGSQLRFANDVIEASD-GSLYFTVSSTKFTPAEYYLDLVSGEPHGVLLKYDPSTNQTSLVLDG-LYFANGVALS--  160 (243)
Q Consensus        85 ~~~~~~~~~~~~~~l~~d~~-G~l~v~~~~~~~~~~~~~~~~~~~~~~g~v~~~~~~~~~~~~~~~~-~~~~~gi~~~--  160 (243)
                      ..... .....+.++++.|+ +.++++-.                 ..+.|..+|..+++....... .....++.++  
T Consensus       198 ~~~~~-~~~~~v~~v~~~pd~~~~l~s~~-----------------~d~~i~iwd~~~~~~~~~l~~~~~~v~~~~~s~~  259 (325)
T d1pgua1         198 DRTHH-KQGSFVRDVEFSPDSGEFVITVG-----------------SDRKISCFDGKSGEFLKYIEDDQEPVQGGIFALS  259 (325)
T ss_dssp             ECSSS-CTTCCEEEEEECSTTCCEEEEEE-----------------TTCCEEEEETTTCCEEEECCBTTBCCCSCEEEEE
T ss_pred             ccccc-CCCCccEEeeeccccceeccccc-----------------cccceeeeeeccccccccccccccccccceeeee
Confidence            11111 11234678899996 56666521                 235788889887776544332 2223344444  


Q ss_pred             -CCCCEEEEEEcCCCeEEEEEeec
Q 026118          161 -EDERFLVVCESWKFRCVKHFLKV  183 (243)
Q Consensus       161 -~dg~~l~v~~~~~~~i~~~~~~~  183 (243)
                       ++|++|..+ ..++.|..|++..
T Consensus       260 ~~dg~~l~s~-s~D~~i~iwd~~~  282 (325)
T d1pgua1         260 WLDSQKFATV-GADATIRVWDVTT  282 (325)
T ss_dssp             ESSSSEEEEE-ETTSEEEEEETTT
T ss_pred             ccCCCEEEEE-eCCCeEEEEECCC
Confidence             688855544 5678899998764

>d1vyhc1 b.69.4.1 (C:92-408) Platelet-activating factor acetylhydrolase IB subunit alpha {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Platelet-activating factor acetylhydrolase IB subunit alpha
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=97.54  E-value=0.0082  Score=44.42  Aligned_cols=180  Identities=13%  Similarity=0.145  Sum_probs=98.4

Q ss_pred             CcccEEEcCCCc-EEEEeCCCcEEEEc-cCCceeE-ecccCCccccceEEccCCCEEEEEeCCCcEEEEe-cCC-cEEEE
Q 026118           11 HPEDVSVDGNGV-LYTATGDGWIKRMH-PNGTWED-WHQVGSQSLLGLTTTKENNVIIVCDSQQGLLKVS-EEG-VTVLV   85 (243)
Q Consensus        11 ~p~~i~~d~~g~-l~~~~~~~~i~~~~-~~g~~~~-~~~~~~~~~~~i~~~~~g~l~~v~~~~~gl~~~~-~~g-~~~~~   85 (243)
                      ....+.+.+++. +..+..++.+..++ ..++... +........ .++++++++++..+.....+..++ .++ .....
T Consensus       103 ~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~l~~~~~d~~v~~~~~~~~~~~~~~  181 (317)
T d1vyhc1         103 NVSSVSIMPNGDHIVSASRDKTIKMWEVQTGYCVKTFTGHREWVR-MVRPNQDGTLIASCSNDQTVRVWVVATKECKAEL  181 (317)
T ss_dssp             CEEEEEECSSSSEEEEEETTSEEEEEETTTCCEEEEEECCSSCEE-EEEECTTSSEEEEEETTSCEEEEETTTCCEEEEE
T ss_pred             cceeeeccCCCceEEeeccCcceeEeecccceeeeEEccCCCcce-eeecccCCCEEEEEeCCCeEEEEeeccceeeEEE
Confidence            344566677775 44555777788887 3444332 222222334 788899999855555545566666 444 22111


Q ss_pred             eccCCCcccCCccEEEcCC--------------------CcEEEEeCCCCCCcccccccccccCCCceEEEEeCCCCeeE
Q 026118           86 SQFNGSQLRFANDVIEASD--------------------GSLYFTVSSTKFTPAEYYLDLVSGEPHGVLLKYDPSTNQTS  145 (243)
Q Consensus        86 ~~~~~~~~~~~~~l~~d~~--------------------G~l~v~~~~~~~~~~~~~~~~~~~~~~g~v~~~~~~~~~~~  145 (243)
                      ...    ...+..+.+.++                    +.++++                 ....+.|..++..+++..
T Consensus       182 ~~~----~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----------------~~~d~~i~~~~~~~~~~~  240 (317)
T d1vyhc1         182 REH----RHVVECISWAPESSYSSISEATGSETKKSGKPGPFLLS-----------------GSRDKTIKMWDVSTGMCL  240 (317)
T ss_dssp             CCC----SSCEEEEEECCSCGGGGGGGCCSCC-------CCEEEE-----------------EETTSEEEEEETTTTEEE
T ss_pred             ecC----CCCceEEEEeeccccceeeccccceeeeeccCCceeEe-----------------ccCCCEEEEEECCCCcEE
Confidence            100    011222233222                    222322                 123456778888877654


Q ss_pred             Eee-ccccccceEEEcCCCCEEEEEEcCCCeEEEEEeecCCCcceEEeccCCCCCCCceEECCCCCEEEEEe
Q 026118          146 LVL-DGLYFANGVALSEDERFLVVCESWKFRCVKHFLKVSGRTDREIFIDNLPGGPDNVNLARDGSFWISII  216 (243)
Q Consensus       146 ~~~-~~~~~~~gi~~~~dg~~l~v~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~i~~d~~G~lwv~~~  216 (243)
                      ... ........+++++++++|+.+ ..++.|..|+......  ...+. .-......++++++|++.++..
T Consensus       241 ~~~~~~~~~v~~~~~~~~~~~l~s~-~~dg~i~iwd~~~~~~--~~~~~-~h~~~V~~~~~s~~~~~l~s~s  308 (317)
T d1vyhc1         241 MTLVGHDNWVRGVLFHSGGKFILSC-ADDKTLRVWDYKNKRC--MKTLN-AHEHFVTSLDFHKTAPYVVTGS  308 (317)
T ss_dssp             EEEECCSSCEEEEEECSSSSCEEEE-ETTTEEEEECCTTSCC--CEEEE-CCSSCEEEEEECSSSSCEEEEE
T ss_pred             EEEeCCCCCEEEEEECCCCCEEEEE-ECCCeEEEEECCCCcE--EEEEc-CCCCCEEEEEEcCCCCEEEEEe
Confidence            433 223445789999999966555 4578899998765322  22222 1123356688899988555443

>d1sq9a_ b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Antiviral protein Ski8 (Ski8p)
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=97.43  E-value=0.0018  Score=51.10  Aligned_cols=137  Identities=13%  Similarity=0.149  Sum_probs=82.7

Q ss_pred             cccEEEcCCCcEEEEeCCCcEEEEcc-CCcee-Eeccc-----CCccccceEEccCCCEEEEEeCCC--c-EEEEe-cCC
Q 026118           12 PEDVSVDGNGVLYTATGDGWIKRMHP-NGTWE-DWHQV-----GSQSLLGLTTTKENNVIIVCDSQQ--G-LLKVS-EEG   80 (243)
Q Consensus        12 p~~i~~d~~g~l~~~~~~~~i~~~~~-~g~~~-~~~~~-----~~~~~~~i~~~~~g~l~~v~~~~~--g-l~~~~-~~g   80 (243)
                      ..++++.++|.|.++..++.|..++. .++.. .+...     ...+...++++|+|++|..+..+.  + +..++ .++
T Consensus       187 ~~~v~~s~dg~lasgs~Dg~i~iwd~~~~~~~~~~~~~~~l~~h~~~V~~l~~spdg~~l~sgs~D~t~~~i~lwd~~~g  266 (393)
T d1sq9a_         187 ATSVDISERGLIATGFNNGTVQISELSTLRPLYNFESQHSMINNSNSIRSVKFSPQGSLLAIAHDSNSFGCITLYETEFG  266 (393)
T ss_dssp             CCEEEECTTSEEEEECTTSEEEEEETTTTEEEEEEECCC---CCCCCEEEEEECSSTTEEEEEEEETTEEEEEEEETTTC
T ss_pred             EEEEEECCCCEEEEEeCCCcEEEEeecccccccccccccccccccceEEEcccccccceeeeecCCCCcceeeecccccc
Confidence            45688889997777778899999983 44332 22111     112333789999999856654332  2 44556 555


Q ss_pred             --cEEEEeccC-------C-CcccCCccEEEcCCCcEEEEeCCCCCCcccccccccccCCCceEEEEeCCCCeeEEeecc
Q 026118           81 --VTVLVSQFN-------G-SQLRFANDVIEASDGSLYFTVSSTKFTPAEYYLDLVSGEPHGVLLKYDPSTNQTSLVLDG  150 (243)
Q Consensus        81 --~~~~~~~~~-------~-~~~~~~~~l~~d~~G~l~v~~~~~~~~~~~~~~~~~~~~~~g~v~~~~~~~~~~~~~~~~  150 (243)
                        ...+.....       . .....+.+++++|+|++.++.+                 ..+.|...|.++++......+
T Consensus       267 ~~~~~l~~~~~~~~~~~~~~gH~~~V~~l~fspd~~~l~S~s-----------------~D~~v~vWd~~~g~~~~~l~g  329 (393)
T d1sq9a_         267 ERIGSLSVPTHSSQASLGEFAHSSWVMSLSFNDSGETLCSAG-----------------WDGKLRFWDVKTKERITTLNM  329 (393)
T ss_dssp             CEEEEECBC--------CCBSBSSCEEEEEECSSSSEEEEEE-----------------TTSEEEEEETTTTEEEEEEEC
T ss_pred             eeeeeeccccccccceeeeecccCceeeeccCCCCCeeEEEC-----------------CCCEEEEEECCCCCEEEEECC
Confidence              222211000       0 0123467899999999888743                 245788888888876654432


Q ss_pred             c-----cccceEEEcCCCCE
Q 026118          151 L-----YFANGVALSEDERF  165 (243)
Q Consensus       151 ~-----~~~~gi~~~~dg~~  165 (243)
                      .     .....++++++++.
T Consensus       330 H~~~v~~~~~~~~~~~~~~~  349 (393)
T d1sq9a_         330 HCDDIEIEEDILAVDEHGDS  349 (393)
T ss_dssp             CGGGCSSGGGCCCBCTTSCB
T ss_pred             cCCcccCCccEEEECCCCCE
Confidence            2     12345788888873

>d1sq9a_ b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Antiviral protein Ski8 (Ski8p)
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=97.24  E-value=0.0035  Score=49.30  Aligned_cols=115  Identities=10%  Similarity=0.076  Sum_probs=68.5

Q ss_pred             ceEEccCCCEEEEEeCCCcEEEEe-cCC--cEEEEeccCC-CcccCCccEEEcCCCcEEEEeCCCCCCcccccccccccC
Q 026118           54 GLTTTKENNVIIVCDSQQGLLKVS-EEG--VTVLVSQFNG-SQLRFANDVIEASDGSLYFTVSSTKFTPAEYYLDLVSGE  129 (243)
Q Consensus        54 ~i~~~~~g~l~~v~~~~~gl~~~~-~~g--~~~~~~~~~~-~~~~~~~~l~~d~~G~l~v~~~~~~~~~~~~~~~~~~~~  129 (243)
                      +++++++|.+ ..+..++-|..++ .++  ...+...... .....+.+++++|+|++.++-+..              .
T Consensus       189 ~v~~s~dg~l-asgs~Dg~i~iwd~~~~~~~~~~~~~~~l~~h~~~V~~l~~spdg~~l~sgs~D--------------~  253 (393)
T d1sq9a_         189 SVDISERGLI-ATGFNNGTVQISELSTLRPLYNFESQHSMINNSNSIRSVKFSPQGSLLAIAHDS--------------N  253 (393)
T ss_dssp             EEEECTTSEE-EEECTTSEEEEEETTTTEEEEEEECCC---CCCCCEEEEEECSSTTEEEEEEEE--------------T
T ss_pred             EEEECCCCEE-EEEeCCCcEEEEeecccccccccccccccccccceEEEcccccccceeeeecCC--------------C
Confidence            6788888844 5555444566777 555  2222211111 112457789999999988773210              0


Q ss_pred             CCceEEEEeCCCCeeEEeec--------------cccccceEEEcCCCCEEEEEEcCCCeEEEEEeecC
Q 026118          130 PHGVLLKYDPSTNQTSLVLD--------------GLYFANGVALSEDERFLVVCESWKFRCVKHFLKVS  184 (243)
Q Consensus       130 ~~g~v~~~~~~~~~~~~~~~--------------~~~~~~gi~~~~dg~~l~v~~~~~~~i~~~~~~~~  184 (243)
                      ..+.|..+|.++++......              .....+.++|+|+++ +.++...++.|..+|...+
T Consensus       254 t~~~i~lwd~~~g~~~~~l~~~~~~~~~~~~~~gH~~~V~~l~fspd~~-~l~S~s~D~~v~vWd~~~g  321 (393)
T d1sq9a_         254 SFGCITLYETEFGERIGSLSVPTHSSQASLGEFAHSSWVMSLSFNDSGE-TLCSAGWDGKLRFWDVKTK  321 (393)
T ss_dssp             TEEEEEEEETTTCCEEEEECBC--------CCBSBSSCEEEEEECSSSS-EEEEEETTSEEEEEETTTT
T ss_pred             CcceeeecccccceeeeeeccccccccceeeeecccCceeeeccCCCCC-eeEEECCCCEEEEEECCCC
Confidence            11235556777665443221              122356799999999 4455567889999998653

>d1h6la_ b.68.3.1 (A:) Thermostable phytase (3-phytase) {Bacillus amyloliquefaciens [TaxId: 1390]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Thermostable phytase (3-phytase)
family: Thermostable phytase (3-phytase)
domain: Thermostable phytase (3-phytase)
species: Bacillus amyloliquefaciens [TaxId: 1390]

Probab=97.16  E-value=0.033  Score=43.29  Aligned_cols=183  Identities=10%  Similarity=0.114  Sum_probs=93.6

Q ss_pred             CCCcEEEEe-CCCcEEEEccCCceeEecccCCccccceE------EccCCC-EEEEEeCCC---c--EEEEe-cCC-cEE
Q 026118           19 GNGVLYTAT-GDGWIKRMHPNGTWEDWHQVGSQSLLGLT------TTKENN-VIIVCDSQQ---G--LLKVS-EEG-VTV   83 (243)
Q Consensus        19 ~~g~l~~~~-~~~~i~~~~~~g~~~~~~~~~~~~~~~i~------~~~~g~-l~~v~~~~~---g--l~~~~-~~g-~~~   83 (243)
                      |...|.+++ ..++|+.++.+|+...+.. .++++ .+.      +..+.. ++++++...   .  ++.++ ..+ ...
T Consensus        38 p~~SlI~gTdK~~Gl~vYdL~G~~l~~~~-~Gr~N-NVDvr~~~~l~~~~~di~vasnR~~~~~~l~~~~id~~~~~l~~  115 (353)
T d1h6la_          38 PQNSKLITTNKKSGLAVYSLEGKMLHSYH-TGKLN-NVDIRYDFPLNGKKVDIAAASNRSEGKNTIEIYAIDGKNGTLQS  115 (353)
T ss_dssp             GGGCEEEEEETTSCCEEEETTCCEEEECC-SSCEE-EEEEEEEEEETTEEEEEEEEEECCTTTCEEEEEEEETTTTEEEE
T ss_pred             cCccEEEEEcCcCCEEEEcCCCcEEEecc-cCCcC-ccccccccccCCcceEEEEEeCCcCcceeEEEEEecCccccccc
Confidence            344566666 6678999998887666543 24444 332      222222 323443321   3  44555 333 332


Q ss_pred             EEec--cCCCcccCCccEEE--cC-CCcEEEEeCCCCCCcccccccccccCCCce--EEEEeCC-CCeeEE----eeccc
Q 026118           84 LVSQ--FNGSQLRFANDVIE--AS-DGSLYFTVSSTKFTPAEYYLDLVSGEPHGV--LLKYDPS-TNQTSL----VLDGL  151 (243)
Q Consensus        84 ~~~~--~~~~~~~~~~~l~~--d~-~G~l~v~~~~~~~~~~~~~~~~~~~~~~g~--v~~~~~~-~~~~~~----~~~~~  151 (243)
                      +...  +.......+.++|.  ++ .|.+++....                ..+.  .|.+..+ .+.+..    .....
T Consensus       116 ~~~~~~p~~~~~~~vYGlc~y~~~~~g~~~afv~~----------------k~G~v~q~~l~~~~~g~v~~~lvr~f~~~  179 (353)
T d1h6la_         116 ITDPNRPIASAIDEVYGFSLYHSQKTGKYYAMVTG----------------KEGEFEQYELNADKNGYISGKKVRAFKMN  179 (353)
T ss_dssp             CSCSSSCEECSSSSCCCEEEEECTTTCCEEEEEEC----------------SSSEEEEEEEEECTTSSEEEEEEEEEECS
T ss_pred             ccccccccccccCcceEEEEEecCCCCeEEEEEEc----------------CCceEEEEEEEcCCCCceeeEeeeccCCC
Confidence            2211  00111234677776  55 4665543221                2233  3444332 232221    12223


Q ss_pred             cccceEEEcCCCCEEEEEEcCCCeEEEEEeecCCCcceEEecc----CCCCCCCceEE--CCCCC-EEEEEecCCc
Q 026118          152 YFANGVALSEDERFLVVCESWKFRCVKHFLKVSGRTDREIFID----NLPGGPDNVNL--ARDGS-FWISIIKMDP  220 (243)
Q Consensus       152 ~~~~gi~~~~dg~~l~v~~~~~~~i~~~~~~~~~~~~~~~~~~----~~~~~~~~i~~--d~~G~-lwv~~~~~~~  220 (243)
                      ..+.|+++|.+.+.||+++. +..||+|+.+.........+..    ...+=|.||++  ..+|. .||+..++.+
T Consensus       180 ~q~EGCVvDde~~~LyisEE-~~Giw~~~a~~~~~~~~~~i~~~~g~~l~~D~EGlaiy~~~~~~GylivSsQG~n  254 (353)
T d1h6la_         180 SQTEGMAADDEYGSLYIAEE-DEAIWKFSAEPDGGSNGTVIDRADGRHLTPDIEGLTIYYAADGKGYLLASSQGNS  254 (353)
T ss_dssp             SCEEEEEEETTTTEEEEEET-TTEEEEEESSTTSCSCCEEEEECSSSSCCSCEEEEEEEECGGGCEEEEEEEGGGT
T ss_pred             CccceEEEeCCCCcEEEecC-ccceEEEEeccCCCccceeeecccCccccCCccccEEEEcCCCCeEEEEEcCCCC
Confidence            45679999999889999986 5689999887543333332211    12223666665  33444 6666666554

>d1fwxa2 b.69.3.1 (A:8-451) Nitrous oxide reductase, N-terminal domain {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Nitrous oxide reductase, N-terminal domain
family: Nitrous oxide reductase, N-terminal domain
domain: Nitrous oxide reductase, N-terminal domain
species: Paracoccus denitrificans [TaxId: 266]

Probab=97.13  E-value=0.0098  Score=47.38  Aligned_cols=109  Identities=6%  Similarity=-0.018  Sum_probs=63.7

Q ss_pred             cCCCEEEEEeCC-CcEEEEe-cCC-cEEEEeccCCCcccCCccEEEcCCC-cEEEEeCCCCCCccccc--cccc-ccCCC
Q 026118           59 KENNVIIVCDSQ-QGLLKVS-EEG-VTVLVSQFNGSQLRFANDVIEASDG-SLYFTVSSTKFTPAEYY--LDLV-SGEPH  131 (243)
Q Consensus        59 ~~g~l~~v~~~~-~gl~~~~-~~g-~~~~~~~~~~~~~~~~~~l~~d~~G-~l~v~~~~~~~~~~~~~--~~~~-~~~~~  131 (243)
                      .||++|||.+.. ..|.+++ .+- ...+...+..   ..+.++....++ +.||.... +|..+...  ..+. .....
T Consensus        97 yDGrylFVNDkan~RVAvIdl~~fkt~kIi~iPn~---~~~HG~r~~~~p~T~YV~~~~-e~~vP~pndg~~l~d~~~y~  172 (459)
T d1fwxa2          97 YDGRFLFMNDKANTRVARVRCDVMKCDAILEIPNA---KGIHGLRPQKWPRSNYVFCNG-EDETPLVNDGTNMEDVANYV  172 (459)
T ss_dssp             EEEEEEEEEETTTTEEEEEETTTTEEEEEEECSSC---CSEEEEEECCSSBCSEEEEEE-CSCEESSCSSSSTTCGG-EE
T ss_pred             cceeEEEEEcCCCceEEEEECcceeeeEEEecCCC---CCCceeecccCCCeEEEEccC-ccccccCCCCccccchhhcc
Confidence            478888888754 4699999 554 4445544332   345677776654 35554322 12221100  0000 01123


Q ss_pred             ceEEEEeCCCCeeEEeeccccccceEEEcCCCCEEEEEEc
Q 026118          132 GVLLKYDPSTNQTSLVLDGLYFANGVALSEDERFLVVCES  171 (243)
Q Consensus       132 g~v~~~~~~~~~~~~~~~~~~~~~gi~~~~dg~~l~v~~~  171 (243)
                      +.+..+|.++.+...-..-...+..+.++++|+++|++..
T Consensus       173 ~~~t~ID~~tm~V~~QV~V~g~ld~~~~s~dGK~af~Tsy  212 (459)
T d1fwxa2         173 NVFTAVDADKWEVAWQVLVSGNLDNCDADYEGKWAFSTSY  212 (459)
T ss_dssp             EEEEEEETTTTEEEEEEEESSCCCCEEECSSSSEEEEEES
T ss_pred             eEEEEEecCCceEEEEeeeCCChhccccCCCCCEEEEEec
Confidence            4567899998776543333346778999999999999854

>d2ovrb2 b.69.4.1 (B:2365-2706) F-box/WD repeat-containing protein 7, FBXW7 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: F-box/WD repeat-containing protein 7, FBXW7
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.08  E-value=0.031  Score=41.61  Aligned_cols=143  Identities=10%  Similarity=0.003  Sum_probs=73.5

Q ss_pred             EcCCC-cEEEEeCCCcEEEEc-cCCceeEecccCCccccceEEccCCCEEEEEeCCCcEEEEe-cCC-cEEEEeccCCCc
Q 026118           17 VDGNG-VLYTATGDGWIKRMH-PNGTWEDWHQVGSQSLLGLTTTKENNVIIVCDSQQGLLKVS-EEG-VTVLVSQFNGSQ   92 (243)
Q Consensus        17 ~d~~g-~l~~~~~~~~i~~~~-~~g~~~~~~~~~~~~~~~i~~~~~g~l~~v~~~~~gl~~~~-~~g-~~~~~~~~~~~~   92 (243)
                      ...++ .+..+..++.|..++ ..++...........  -..+.+++++++++...+.+..++ ... ......... ..
T Consensus       183 ~~~~~~~l~s~~~dg~i~~~d~~~~~~~~~~~~~~~~--v~~~~~~~~~l~s~s~d~~i~iwd~~~~~~~~~~~~~~-~~  259 (342)
T d2ovrb2         183 LQFDGIHVVSGSLDTSIRVWDVETGNCIHTLTGHQSL--TSGMELKDNILVSGNADSTVKIWDIKTGQCLQTLQGPN-KH  259 (342)
T ss_dssp             EEECSSEEEEEETTSCEEEEETTTCCEEEEECCCCSC--EEEEEEETTEEEEEETTSCEEEEETTTCCEEEEECSTT-SC
T ss_pred             ccCCCCEEEEEeCCCeEEEeecccceeeeEecccccc--eeEEecCCCEEEEEcCCCEEEEEecccccccccccccc-ee
Confidence            33345 355666788888888 344432222211111  223344556756666555677777 444 222221111 11


Q ss_pred             ccCCccEEEcCCCcEEEEeCCCCCCcccccccccccCCCceEEEEeCCCCeeEE-eec-----cccccceEEEcCCCCEE
Q 026118           93 LRFANDVIEASDGSLYFTVSSTKFTPAEYYLDLVSGEPHGVLLKYDPSTNQTSL-VLD-----GLYFANGVALSEDERFL  166 (243)
Q Consensus        93 ~~~~~~l~~d~~G~l~v~~~~~~~~~~~~~~~~~~~~~~g~v~~~~~~~~~~~~-~~~-----~~~~~~gi~~~~dg~~l  166 (243)
                      ...  -.++..+++++++-+                 ..+.|..+|..+++... +..     .......+++++++..+
T Consensus       260 ~~~--~~~~~~~~~~~~s~s-----------------~Dg~i~iwd~~tg~~i~~~~~~~~~~~~~~v~~v~~s~~~~~l  320 (342)
T d2ovrb2         260 QSA--VTCLQFNKNFVITSS-----------------DDGTVKLWDLKTGEFIRNLVTLESGGSGGVVWRIRASNTKLVC  320 (342)
T ss_dssp             SSC--EEEEEECSSEEEEEE-----------------TTSEEEEEETTTCCEEEEEEECTTGGGTCEEEEEEECSSEEEE
T ss_pred             eec--eeecccCCCeeEEEc-----------------CCCEEEEEECCCCCEEEEEecccCCCCCCCEEEEEECCCCCEE
Confidence            112  223444566666532                 24678888988776543 221     11235679999998744


Q ss_pred             EEEEcCCC----eEEEEEee
Q 026118          167 VVCESWKF----RCVKHFLK  182 (243)
Q Consensus       167 ~v~~~~~~----~i~~~~~~  182 (243)
                       ++...++    .|+.+|++
T Consensus       321 -a~g~~dGt~~~~l~~~Df~  339 (342)
T d2ovrb2         321 -AVGSRNGTEETKLLVLDFD  339 (342)
T ss_dssp             -EEECSSSSSCCEEEEEECC
T ss_pred             -EEEeCCCCCeeEEEEEeCC
Confidence             4433333    47777765

>d2hqsa1 b.68.4.1 (A:163-431) TolB, C-terminal domain {Escherichia coli [TaxId: 562]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: TolB, C-terminal domain
family: TolB, C-terminal domain
domain: TolB, C-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=96.99  E-value=0.035  Score=40.58  Aligned_cols=76  Identities=12%  Similarity=0.017  Sum_probs=42.8

Q ss_pred             ceEEEEeCCCCeeEEeeccccccceEEEcCCCCEEEEEEcCCCeEEEEEeecCCCcceEEeccCCCCCCCceEECCCCC
Q 026118          132 GVLLKYDPSTNQTSLVLDGLYFANGVALSEDERFLVVCESWKFRCVKHFLKVSGRTDREIFIDNLPGGPDNVNLARDGS  210 (243)
Q Consensus       132 g~v~~~~~~~~~~~~~~~~~~~~~gi~~~~dg~~l~v~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~i~~d~~G~  210 (243)
                      ..|+.++.+++....+...........++++++.++......+....+..+... ...+...  ..+.-...++++||+
T Consensus       151 ~~i~~~~~~~~~~~~~~~~~~~~~~~~~spdg~~~~~~~~~~~~~~i~~~~~~~-~~~~~~~--~~~~~~~p~~SPDG~  226 (269)
T d2hqsa1         151 PQVYKVNINGGAPQRITWEGSQNQDADVSSDGKFMVMVSSNGGQQHIAKQDLAT-GGVQVLS--STFLDETPSLAPNGT  226 (269)
T ss_dssp             CEEEEEETTSSCCEECCCSSSEEEEEEECTTSSEEEEEEECSSCEEEEEEETTT-CCEEECC--CSSSCEEEEECTTSS
T ss_pred             ceEeeeecccccceeeecccccccccccccccceeEEEeecCCceeeeEeeccc-ccceEee--cCccccceEECCCCC
Confidence            368888888776665554444445678999999877765544333333333211 2222221  122223457788887

>d1k32a2 b.68.7.1 (A:39-319) Tricorn protease N-terminal domain {Archaeon Thermoplasma acidophilum [TaxId: 2303]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Tricorn protease N-terminal domain
family: Tricorn protease N-terminal domain
domain: Tricorn protease N-terminal domain
species: Archaeon Thermoplasma acidophilum [TaxId: 2303]

Probab=96.97  E-value=0.0024  Score=47.37  Aligned_cols=79  Identities=14%  Similarity=-0.005  Sum_probs=50.3

Q ss_pred             ceEEEEeCCCCeeEEeeccccccceEEEcCCCCEEEEEEcCC-----CeEEEEEeecCCCcceEEecc------CCCCCC
Q 026118          132 GVLLKYDPSTNQTSLVLDGLYFANGVALSEDERFLVVCESWK-----FRCVKHFLKVSGRTDREIFID------NLPGGP  200 (243)
Q Consensus       132 g~v~~~~~~~~~~~~~~~~~~~~~gi~~~~dg~~l~v~~~~~-----~~i~~~~~~~~~~~~~~~~~~------~~~~~~  200 (243)
                      +.||.++.++++.+++..........+|||||++|.++....     ..|+.++..++.   ...+..      ......
T Consensus        21 ~dl~~~d~~~g~~~~Lt~~~~~~~~p~~SPDG~~iaf~~~~~~~~~~~~i~~~~~~~g~---~~~lt~~~~~~~~~~~~~   97 (281)
T d1k32a2          21 DDLWEHDLKSGSTRKIVSNLGVINNARFFPDGRKIAIRVMRGSSLNTADLYFYNGENGE---IKRITYFSGKSTGRRMFT   97 (281)
T ss_dssp             TEEEEEETTTCCEEEEECSSSEEEEEEECTTSSEEEEEEEESTTCCEEEEEEEETTTTE---EEECCCCCEEEETTEECS
T ss_pred             CcEEEEECCCCCEEEEecCCCcccCEEECCCCCEEEEEEeeCCCCCceEEEEEEecCCc---eEEeeecCCCccCccccc
Confidence            479999999999988877666677889999999887653321     247777765431   111110      011123


Q ss_pred             CceEECCCCCEEE
Q 026118          201 DNVNLARDGSFWI  213 (243)
Q Consensus       201 ~~i~~d~~G~lwv  213 (243)
                      ...++.++|+..+
T Consensus        98 ~~~~~spdg~~l~  110 (281)
T d1k32a2          98 DVAGFDPDGNLII  110 (281)
T ss_dssp             EEEEECTTCCEEE
T ss_pred             cccccCCCCCEEE
Confidence            4567778887433

>d2bgra1 b.70.3.1 (A:39-508) Dipeptidyl peptidase IV/CD26, N-terminal domain {Pig (Sus scrofa) [TaxId: 9823]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: DPP6 N-terminal domain-like
family: DPP6 N-terminal domain-like
domain: Dipeptidyl peptidase IV/CD26, N-terminal domain
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=96.75  E-value=0.023  Score=45.57  Aligned_cols=116  Identities=13%  Similarity=-0.020  Sum_probs=70.5

Q ss_pred             ceEEccCCCEEEEEeCCCcEEEEe-cCC-cEEEEeccC-CCcccCCccEEEcCCCcEE-EE-eCCCCCCccccccccccc
Q 026118           54 GLTTTKENNVIIVCDSQQGLLKVS-EEG-VTVLVSQFN-GSQLRFANDVIEASDGSLY-FT-VSSTKFTPAEYYLDLVSG  128 (243)
Q Consensus        54 ~i~~~~~g~l~~v~~~~~gl~~~~-~~g-~~~~~~~~~-~~~~~~~~~l~~d~~G~l~-v~-~~~~~~~~~~~~~~~~~~  128 (243)
                      .+...+++.+ +.. .++.++.++ .++ .+.+..... ......+.++.++|||+.. ++ +...          ....
T Consensus        21 ~~~W~~d~~~-~~~-~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~i~~~~~SpDg~~i~~~~~~~~----------~~r~   88 (470)
T d2bgra1          21 SLRWISDHEY-LYK-QENNILVFNAEYGNSSVFLENSTFDEFGHSINDYSISPDGQFILLEYNYVK----------QWRH   88 (470)
T ss_dssp             CCEECSSSEE-EEE-SSSCEEEEETTTCCEEEEECTTTTTTSSSCCCEEEECTTSSEEEEEEEEEE----------CSSS
T ss_pred             CCEeCCCCEE-EEE-cCCcEEEEECCCCCEEEEEchhhhhhccCccceeEECCCCCEEEEEECCcc----------eeee
Confidence            4455567776 333 356799999 667 444443211 1112346788999999833 32 1110          0011


Q ss_pred             CCCceEEEEeCCCCeeEEeeccccccceEEEcCCCCEEEEEEcCCCeEEEEEeec
Q 026118          129 EPHGVLLKYDPSTNQTSLVLDGLYFANGVALSEDERFLVVCESWKFRCVKHFLKV  183 (243)
Q Consensus       129 ~~~g~v~~~~~~~~~~~~~~~~~~~~~gi~~~~dg~~l~v~~~~~~~i~~~~~~~  183 (243)
                      ...+.++.+|.+++++..+.........+.|+|||+.+.+..  ++.++.++..+
T Consensus        89 s~~~~~~l~d~~~~~~~~l~~~~~~~~~~~~SPDG~~ia~~~--~~~l~~~~~~~  141 (470)
T d2bgra1          89 SYTASYDIYDLNKRQLITEERIPNNTQWVTWSPVGHKLAYVW--NNDIYVKIEPN  141 (470)
T ss_dssp             CEEEEEEEEETTTTEECCSSCCCTTEEEEEECSSTTCEEEEE--TTEEEEESSTT
T ss_pred             ccCceEEEEECCCCcccccccCCccccccccccCcceeeEee--cccceEEECCC
Confidence            223578899999998777655445556789999999776653  46787776654

>d1nexb2 b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Cdc4 propeller domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=96.51  E-value=0.095  Score=39.01  Aligned_cols=140  Identities=9%  Similarity=0.059  Sum_probs=75.5

Q ss_pred             CCCc-EEEEeCCCcEEEEc-cCCceeEecc-cCCccccceEEccCCCEEEEEeCCCcEEEEe-cCC-cEEEEeccCCCcc
Q 026118           19 GNGV-LYTATGDGWIKRMH-PNGTWEDWHQ-VGSQSLLGLTTTKENNVIIVCDSQQGLLKVS-EEG-VTVLVSQFNGSQL   93 (243)
Q Consensus        19 ~~g~-l~~~~~~~~i~~~~-~~g~~~~~~~-~~~~~~~~i~~~~~g~l~~v~~~~~gl~~~~-~~g-~~~~~~~~~~~~~   93 (243)
                      +++. +..+..++.|..++ ..++...... ...... .+.+++++.+++++...+.+..++ .++ ......   +. .
T Consensus       169 ~~~~~~~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~d~~i~i~d~~~~~~~~~~~---~h-~  243 (355)
T d1nexb2         169 GHGNIVVSGSYDNTLIVWDVAQMKCLYILSGHTDRIY-STIYDHERKRCISASMDTTIRIWDLENGELMYTLQ---GH-T  243 (355)
T ss_dssp             EETTEEEEEETTSCEEEEETTTTEEEEEECCCSSCEE-EEEEETTTTEEEEEETTSCEEEEETTTCCEEEEEC---CC-S
T ss_pred             cccceeeeecccceeeeeecccccceeeeeccccccc-cccccccceeeecccccceEEeeeccccccccccc---cc-c
Confidence            3444 34445677788777 3443322222 122234 678888888856666555677777 666 222111   11 1


Q ss_pred             cCCccEEEcCCCcEEEEeCCCCCCcccccccccccCCCceEEEEeCCCCeeEEeeccccccceEEEcCCCCEEEEEEcCC
Q 026118           94 RFANDVIEASDGSLYFTVSSTKFTPAEYYLDLVSGEPHGVLLKYDPSTNQTSLVLDGLYFANGVALSEDERFLVVCESWK  173 (243)
Q Consensus        94 ~~~~~l~~d~~G~l~v~~~~~~~~~~~~~~~~~~~~~~g~v~~~~~~~~~~~~~~~~~~~~~gi~~~~dg~~l~v~~~~~  173 (243)
                      ..+.++..+  ++++++.+                 ..+.|..+|..+..............-.+++++++ ++++. .+
T Consensus       244 ~~v~~~~~~--~~~l~~~~-----------------~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~-~l~~g-~d  302 (355)
T d1nexb2         244 ALVGLLRLS--DKFLVSAA-----------------ADGSIRGWDANDYSRKFSYHHTNLSAITTFYVSDN-ILVSG-SE  302 (355)
T ss_dssp             SCCCEEEEC--SSEEEEEC-----------------TTSEEEEEETTTCCEEEEEECTTCCCCCEEEECSS-EEEEE-ET
T ss_pred             ccccccccc--cceeeeee-----------------cccccccccccccceecccccCCceEEEEEcCCCC-EEEEE-eC
Confidence            234566664  44555422                 24578888887654332222222222235667777 55554 35


Q ss_pred             CeEEEEEeecC
Q 026118          174 FRCVKHFLKVS  184 (243)
Q Consensus       174 ~~i~~~~~~~~  184 (243)
                      +.|..||+..+
T Consensus       303 ~~i~vwd~~tg  313 (355)
T d1nexb2         303 NQFNIYNLRSG  313 (355)
T ss_dssp             TEEEEEETTTC
T ss_pred             CEEEEEECCCC
Confidence            78999998653

>d1pgua2 b.69.4.1 (A:327-613) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=96.47  E-value=0.093  Score=38.40  Aligned_cols=156  Identities=9%  Similarity=-0.045  Sum_probs=74.8

Q ss_pred             EEEcCCC-cEEEEeCC-CcEEEEccCC-cee-EecccCCccccceEEccCCCEEEEEeCCCcEEEEe-cCCcEEEEeccC
Q 026118           15 VSVDGNG-VLYTATGD-GWIKRMHPNG-TWE-DWHQVGSQSLLGLTTTKENNVIIVCDSQQGLLKVS-EEGVTVLVSQFN   89 (243)
Q Consensus        15 i~~d~~g-~l~~~~~~-~~i~~~~~~g-~~~-~~~~~~~~~~~~i~~~~~g~l~~v~~~~~gl~~~~-~~g~~~~~~~~~   89 (243)
                      .++.+++ .+.++..+ +.+..++... +.. ........+...++++++|.+|.++...+.+..++ .++... .....
T Consensus       124 ~~~~~~~~~~~v~~~~~~~v~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~g~~dg~i~i~d~~~~~~~-~~~~~  202 (287)
T d1pgua2         124 SAVSLSQNYVAVGLEEGNTIQVFKLSDLEVSFDLKTPLRAKPSYISISPSETYIAAGDVMGKILLYDLQSREVK-TSRWA  202 (287)
T ss_dssp             EEEEECSSEEEEEETTTSCEEEEETTEEEEEEECSSCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEE-ECCSC
T ss_pred             eeeeccCcceeeeccccceeeeeeccccceeeeeeeccCCceeEEEeccCccccccccccccccceeecccccc-ccccc
Confidence            4444444 45555544 3455665222 211 11111122333789999999867777666788888 555221 11111


Q ss_pred             CCcccCCccEEEcCCCcEEEEeCCCCCCcccccccccccCCCceEEEEeCCC-CeeEEeec-cccccceEEEcCCCCEEE
Q 026118           90 GSQLRFANDVIEASDGSLYFTVSSTKFTPAEYYLDLVSGEPHGVLLKYDPST-NQTSLVLD-GLYFANGVALSEDERFLV  167 (243)
Q Consensus        90 ~~~~~~~~~l~~d~~G~l~v~~~~~~~~~~~~~~~~~~~~~~g~v~~~~~~~-~~~~~~~~-~~~~~~gi~~~~dg~~l~  167 (243)
                      + ....+.++++.|.+..........       ..+..+...+.|+.++... .+...... ......+++++++++ ++
T Consensus       203 ~-h~~~v~~~~~~p~~~~~~~~~~~~-------~~l~sgs~D~~i~iw~~~~~~~~~~~~~~h~~~V~~v~~~~~~~-l~  273 (287)
T d1pgua2         203 F-RTSKINAISWKPAEKGANEEEIEE-------DLVATGSLDTNIFIYSVKRPMKIIKALNAHKDGVNNLLWETPST-LV  273 (287)
T ss_dssp             C-CSSCEEEEEECCCC------CCSC-------CEEEEEETTSCEEEEESSCTTCCEEETTSSTTCEEEEEEEETTE-EE
T ss_pred             c-cccccceeeecccccccccccCCC-------CeeEeecCCCeEEEEECCCCCeEEEEeCCCCCCeEEEEECCCCE-EE
Confidence            1 112345666665543221110000       0011122345677777654 33323222 234567899998875 55


Q ss_pred             EEEcCCCeEEEEEe
Q 026118          168 VCESWKFRCVKHFL  181 (243)
Q Consensus       168 v~~~~~~~i~~~~~  181 (243)
                      .+ ..++.|..+++
T Consensus       274 s~-g~D~~v~iW~i  286 (287)
T d1pgua2         274 SS-GADACIKRWNV  286 (287)
T ss_dssp             EE-ETTSCEEEEEE
T ss_pred             EE-ECCCeEEEEEE
Confidence            44 45677777663

>d2bgra1 b.70.3.1 (A:39-508) Dipeptidyl peptidase IV/CD26, N-terminal domain {Pig (Sus scrofa) [TaxId: 9823]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: DPP6 N-terminal domain-like
family: DPP6 N-terminal domain-like
domain: Dipeptidyl peptidase IV/CD26, N-terminal domain
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=96.46  E-value=0.028  Score=45.02  Aligned_cols=136  Identities=7%  Similarity=-0.076  Sum_probs=75.3

Q ss_pred             CcccEEEcCCCcEEEEeCCCcEEEEc-cCCceeEeccc------CCccccceEEccCCCEEEEEeCC---------CcEE
Q 026118           11 HPEDVSVDGNGVLYTATGDGWIKRMH-PNGTWEDWHQV------GSQSLLGLTTTKENNVIIVCDSQ---------QGLL   74 (243)
Q Consensus        11 ~p~~i~~d~~g~l~~~~~~~~i~~~~-~~g~~~~~~~~------~~~~~~~i~~~~~g~l~~v~~~~---------~gl~   74 (243)
                      .+.++.+-+++.++.. .++.++.++ .+++...+...      ..... +..++|||+.+.++...         .-++
T Consensus        18 ~~~~~~W~~d~~~~~~-~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~i~-~~~~SpDg~~i~~~~~~~~~~r~s~~~~~~   95 (470)
T d2bgra1          18 KLYSLRWISDHEYLYK-QENNILVFNAEYGNSSVFLENSTFDEFGHSIN-DYSISPDGQFILLEYNYVKQWRHSYTASYD   95 (470)
T ss_dssp             CCCCCEECSSSEEEEE-SSSCEEEEETTTCCEEEEECTTTTTTSSSCCC-EEEECTTSSEEEEEEEEEECSSSCEEEEEE
T ss_pred             cccCCEeCCCCEEEEE-cCCcEEEEECCCCCEEEEEchhhhhhccCccc-eeEECCCCCEEEEEECCcceeeeccCceEE
Confidence            3445556677764433 466788888 45554433221      11223 77899999964443211         1255


Q ss_pred             EEe-cCC-cEEEEeccCCCcccCCccEEEcCCCcEEEEeCCCCCCcccccccccccCCCceEEEEeCCCCeeEEeecc--
Q 026118           75 KVS-EEG-VTVLVSQFNGSQLRFANDVIEASDGSLYFTVSSTKFTPAEYYLDLVSGEPHGVLLKYDPSTNQTSLVLDG--  150 (243)
Q Consensus        75 ~~~-~~g-~~~~~~~~~~~~~~~~~~l~~d~~G~l~v~~~~~~~~~~~~~~~~~~~~~~g~v~~~~~~~~~~~~~~~~--  150 (243)
                      .++ .++ ...+..    . ......+.++|||+.++...                  ...+|..+..+++..++...  
T Consensus        96 l~d~~~~~~~~l~~----~-~~~~~~~~~SPDG~~ia~~~------------------~~~l~~~~~~~g~~~~~t~~~~  152 (470)
T d2bgra1          96 IYDLNKRQLITEER----I-PNNTQWVTWSPVGHKLAYVW------------------NNDIYVKIEPNLPSYRITWTGK  152 (470)
T ss_dssp             EEETTTTEECCSSC----C-CTTEEEEEECSSTTCEEEEE------------------TTEEEEESSTTSCCEECCSCCB
T ss_pred             EEECCCCccccccc----C-CccccccccccCcceeeEee------------------cccceEEECCCCceeeeeeccC
Confidence            666 555 322111    1 12344568899997443321                  23677778776665543211  


Q ss_pred             -----------------ccccceEEEcCCCCEEEEEEc
Q 026118          151 -----------------LYFANGVALSEDERFLVVCES  171 (243)
Q Consensus       151 -----------------~~~~~gi~~~~dg~~l~v~~~  171 (243)
                                       .....++.++|||++|.+...
T Consensus       153 ~~~~~~g~~d~~~~~~~~~~~~~~~wSPDGk~ia~~~~  190 (470)
T d2bgra1         153 EDIIYNGITDWVYEEEVFSAYSALWWSPNGTFLAYAQF  190 (470)
T ss_dssp             TTTEEESBCCHHHHHHTSSSSBCEEECTTSSEEEEEEE
T ss_pred             CCcccccccceeeeeeecCCccccEECCCCCccceeEe
Confidence                             122456889999998877643

>d1tl2a_ b.67.1.1 (A:) Tachylectin-2 {Japanese horseshoe crab (Tachypleus tridentatus) [TaxId: 6853]}

class: All beta proteins
fold: 5-bladed beta-propeller
superfamily: Tachylectin-2
family: Tachylectin-2
domain: Tachylectin-2
species: Japanese horseshoe crab (Tachypleus tridentatus) [TaxId: 6853]

Probab=96.46  E-value=0.0079  Score=42.26  Aligned_cols=100  Identities=21%  Similarity=0.197  Sum_probs=61.2

Q ss_pred             eecccccCCcccEEEcCCCcEEEEeCCCcEEEEc-cCCceeEecc-------cC-CccccceEEccCCCEEEEEeCCCcE
Q 026118            3 KLGEGIVNHPEDVSVDGNGVLYTATGDGWIKRMH-PNGTWEDWHQ-------VG-SQSLLGLTTTKENNVIIVCDSQQGL   73 (243)
Q Consensus         3 ~~~~g~~~~p~~i~~d~~g~l~~~~~~~~i~~~~-~~g~~~~~~~-------~~-~~~~~~i~~~~~g~l~~v~~~~~gl   73 (243)
                      +++-|.-..=..|-+||+|.||..+. +.|++-. |+.+-..|..       .. ..-. -+.|+|+|.| |... .+.+
T Consensus        80 rIG~ggWn~FkflffdP~G~LyaVt~-~~LYr~~pPtn~~q~W~g~a~~vG~~gw~df~-~lFFdP~G~L-YaV~-~~~l  155 (235)
T d1tl2a_          80 KIGNGGWNQFQFLFFDPNGYLYAVSK-DKLYKASPPQSDTDNWIARATEVGSGGWSGFK-FLFFHPNGYL-YAVH-GQQF  155 (235)
T ss_dssp             EEECSCGGGCSEEEECTTSCEEEEET-TEEEEESCCCSTTCCHHHHSEEEECSSGGGEE-EEEECTTSCE-EEEE-TTEE
T ss_pred             hcccCcccceEEEEECCCceEEEecC-cceecCCcCcccchhhhhhhhhhccCCcCcee-EEEECCCceE-EEEE-CCcE
Confidence            44454222344688899999998874 6899987 4443333321       11 1112 4788999999 8886 4578


Q ss_pred             EEEe-cCC--c------EEEEeccCCCcccCCccEEEcCCCcEEEE
Q 026118           74 LKVS-EEG--V------TVLVSQFNGSQLRFANDVIEASDGSLYFT  110 (243)
Q Consensus        74 ~~~~-~~g--~------~~~~~~~~~~~~~~~~~l~~d~~G~l~v~  110 (243)
                      ++-. +.+  -      +.+..   + .-..+..+.+.++|+||..
T Consensus       156 ~k~~pP~~~~d~WL~~st~igr---~-~w~~~~fi~Fs~dG~L~~v  197 (235)
T d1tl2a_         156 YKALPPVSNQDNWLARATKIGQ---G-GWDTFKFLFFSSVGTLFGV  197 (235)
T ss_dssp             EEECCCSSTTCCHHHHCEEEES---S-SGGGEEEEEECTTSCEEEE
T ss_pred             EEcCCCCCCCchhhhhhhhhcc---C-cccCceEEEECCCCcEEEE
Confidence            8777 433  1      22221   1 1223456788999999987

>d2ad6a1 b.70.1.1 (A:1-571) Methanol dehydrogenase, heavy chain {Methylophilus methylotrophus, w3a1 [TaxId: 17]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: Quinoprotein alcohol dehydrogenase-like
family: Quinoprotein alcohol dehydrogenase-like
domain: Methanol dehydrogenase, heavy chain
species: Methylophilus methylotrophus, w3a1 [TaxId: 17]

Probab=96.42  E-value=0.11  Score=43.06  Aligned_cols=110  Identities=15%  Similarity=0.180  Sum_probs=63.7

Q ss_pred             CCcEEEEeC-CCcEEEEcc--CCceeEecccC----C-------ccccceEEccCCCEEEEEeCCCcEEEEe-cCC-cEE
Q 026118           20 NGVLYTATG-DGWIKRMHP--NGTWEDWHQVG----S-------QSLLGLTTTKENNVIIVCDSQQGLLKVS-EEG-VTV   83 (243)
Q Consensus        20 ~g~l~~~~~-~~~i~~~~~--~g~~~~~~~~~----~-------~~~~~i~~~~~g~l~~v~~~~~gl~~~~-~~g-~~~   83 (243)
                      +|.||+++. .+.|+.+|.  +|+..--....    .       ....++++. ++++ |+++....|+.+| .+| ...
T Consensus        62 ~g~vyv~t~~~~~v~Alda~~tG~~~W~~~~~~~~~~~~~~~~~~~~rg~a~~-~~~i-~~~~~~g~l~alda~tG~~~w  139 (571)
T d2ad6a1          62 GDMMYVHSAFPNNTYALNLNDPGKIVWQHKPKQDASTKAVMCCDVVDRGLAYG-AGQI-VKKQANGHLLALDAKTGKINW  139 (571)
T ss_dssp             TTEEEEECSTTTCEEEEETTCTTSEEEEECCCCCGGGGGGCTTCSCCCCCEEE-TTEE-EEECTTSEEEEEETTTCCEEE
T ss_pred             CCEEEEecCCCCeEEEEeCCCCCceEEEecCCCCcccccccccCcCCCcceee-CCeE-EEEeCCCcEEeeehhhhhhhc
Confidence            789999984 688999993  37654321110    0       011145553 4566 8888777899999 778 332


Q ss_pred             EEecc---CCCcccCCccEEEcCCCcEEEEeCCCCCCcccccccccccCCCceEEEEeCCCCeeEE
Q 026118           84 LVSQF---NGSQLRFANDVIEASDGSLYFTVSSTKFTPAEYYLDLVSGEPHGVLLKYDPSTNQTSL  146 (243)
Q Consensus        84 ~~~~~---~~~~~~~~~~l~~d~~G~l~v~~~~~~~~~~~~~~~~~~~~~~g~v~~~~~~~~~~~~  146 (243)
                      -....   .+.....+. +.  .++.++++.+..            +....+.|+.+|..+|+...
T Consensus       140 ~~~~~~~~~~~~~t~~p-~v--~~~~vivg~~~~------------~~~~~G~v~a~D~~TG~~~W  190 (571)
T d2ad6a1         140 EVEVCDPKVGSTLTQAP-FV--AKDTVLMGCSGA------------ELGVRGAVNAFDLKTGELKW  190 (571)
T ss_dssp             EEECCCGGGTCBCCSCC-EE--ETTEEEEECBCG------------GGTCCCEEEEEETTTCCEEE
T ss_pred             cccccccccccceeecC-eE--eCCeEEEeeccc------------cccccCcEEEEECCCCcEEE
Confidence            22111   111112221 12  247888875431            12245789999999998764

>d1kv9a2 b.70.1.1 (A:1-560) Quinoprotein alcohol dehydrogenase, N-terminal domain {Pseudomonas putida, hk5 [TaxId: 303]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: Quinoprotein alcohol dehydrogenase-like
family: Quinoprotein alcohol dehydrogenase-like
domain: Quinoprotein alcohol dehydrogenase, N-terminal domain
species: Pseudomonas putida, hk5 [TaxId: 303]

Probab=96.38  E-value=0.074  Score=43.98  Aligned_cols=113  Identities=13%  Similarity=0.117  Sum_probs=62.4

Q ss_pred             CCcEEEEeCCCcEEEEc-cCCceeEecccC-----------CccccceEEccCCCEEEEEeCCCcEEEEe-cCC-cEEEE
Q 026118           20 NGVLYTATGDGWIKRMH-PNGTWEDWHQVG-----------SQSLLGLTTTKENNVIIVCDSQQGLLKVS-EEG-VTVLV   85 (243)
Q Consensus        20 ~g~l~~~~~~~~i~~~~-~~g~~~~~~~~~-----------~~~~~~i~~~~~g~l~~v~~~~~gl~~~~-~~g-~~~~~   85 (243)
                      +|.||+++.++.|+.+| .+|+..--....           .....+++.. ++++ |+++.+..|+.+| .+| .....
T Consensus        66 ~g~vyv~t~~~~v~AlDa~tG~~lW~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~v-~~~~~~g~l~Alda~tG~~~w~~  143 (560)
T d1kv9a2          66 DGVIYTSMSWSRVIAVDAASGKELWRYDPEVAKVKARTSCCDAVNRGVALW-GDKV-YVGTLDGRLIALDAKTGKAIWSQ  143 (560)
T ss_dssp             TTEEEEEEGGGEEEEEETTTCCEEEEECCCCCGGGGGGCTTCSCCCCCEEE-BTEE-EEECTTSEEEEEETTTCCEEEEE
T ss_pred             CCEEEEECCCCeEEEEeCCCCCEEEEECCCCCccccccccccccccCccee-CCeE-EEEeCCCEEEEEECCCCcEEecc
Confidence            78999999889999999 577655321100           0011123332 3456 8888777899999 778 33222


Q ss_pred             eccCCCcccCCccEEEcCCCcEEEEeCCCCCCcccccccccccCCCceEEEEeCCCCeeEE
Q 026118           86 SQFNGSQLRFANDVIEASDGSLYFTVSSTKFTPAEYYLDLVSGEPHGVLLKYDPSTNQTSL  146 (243)
Q Consensus        86 ~~~~~~~~~~~~~l~~d~~G~l~v~~~~~~~~~~~~~~~~~~~~~~g~v~~~~~~~~~~~~  146 (243)
                      .............--.-.++.+++.....            ....++.|+.+|..+|++..
T Consensus       144 ~~~~~~~~~~~~~~p~v~~~~vivg~~~~------------~~~~~G~v~a~D~~TG~~~W  192 (560)
T d1kv9a2         144 QTTDPAKPYSITGAPRVVKGKVIIGNGGA------------EYGVRGFVSAYDADTGKLAW  192 (560)
T ss_dssp             ECSCTTSSCBCCSCCEEETTEEEECCBCT------------TTCCBCEEEEEETTTCCEEE
T ss_pred             CccCcccceeeeeeeeeecCcccccccce------------eccccceEEEEECCCceEEe
Confidence            21111110011110111356677764321            12235689999999998664

>d1k32a2 b.68.7.1 (A:39-319) Tricorn protease N-terminal domain {Archaeon Thermoplasma acidophilum [TaxId: 2303]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Tricorn protease N-terminal domain
family: Tricorn protease N-terminal domain
domain: Tricorn protease N-terminal domain
species: Archaeon Thermoplasma acidophilum [TaxId: 2303]

Probab=96.23  E-value=0.027  Score=41.34  Aligned_cols=98  Identities=15%  Similarity=0.186  Sum_probs=57.8

Q ss_pred             EEccC--CCEEEEEeCCCcEEEEe-cCC-cEEEEeccCCCcccCCccEEEcCCCc-EEEEeCCCCCCcccccccccccCC
Q 026118           56 TTTKE--NNVIIVCDSQQGLLKVS-EEG-VTVLVSQFNGSQLRFANDVIEASDGS-LYFTVSSTKFTPAEYYLDLVSGEP  130 (243)
Q Consensus        56 ~~~~~--g~l~~v~~~~~gl~~~~-~~g-~~~~~~~~~~~~~~~~~~l~~d~~G~-l~v~~~~~~~~~~~~~~~~~~~~~  130 (243)
                      ..+|+  |+.+.++. .+.|+.++ .++ .+.+....     ......+++|||+ |.++....            ....
T Consensus         5 ~~sPdi~G~~v~f~~-~~dl~~~d~~~g~~~~Lt~~~-----~~~~~p~~SPDG~~iaf~~~~~------------~~~~   66 (281)
T d1k32a2           5 LLNPDIHGDRIIFVC-CDDLWEHDLKSGSTRKIVSNL-----GVINNARFFPDGRKIAIRVMRG------------SSLN   66 (281)
T ss_dssp             CEEEEEETTEEEEEE-TTEEEEEETTTCCEEEEECSS-----SEEEEEEECTTSSEEEEEEEES------------TTCC
T ss_pred             ccCCCCCCCEEEEEe-CCcEEEEECCCCCEEEEecCC-----CcccCEEECCCCCEEEEEEeeC------------CCCC
Confidence            34566  77533332 45688888 556 55553321     1233558999997 44432110            0112


Q ss_pred             CceEEEEeCCCCeeEEeeccc-------cccceEEEcCCCCEEEEEEc
Q 026118          131 HGVLLKYDPSTNQTSLVLDGL-------YFANGVALSEDERFLVVCES  171 (243)
Q Consensus       131 ~g~v~~~~~~~~~~~~~~~~~-------~~~~gi~~~~dg~~l~v~~~  171 (243)
                      ...||.++..+++.+++....       .....++++|||+.|+++..
T Consensus        67 ~~~i~~~~~~~g~~~~lt~~~~~~~~~~~~~~~~~~spdg~~l~~~~~  114 (281)
T d1k32a2          67 TADLYFYNGENGEIKRITYFSGKSTGRRMFTDVAGFDPDGNLIISTDA  114 (281)
T ss_dssp             EEEEEEEETTTTEEEECCCCCEEEETTEECSEEEEECTTCCEEEEECT
T ss_pred             ceEEEEEEecCCceEEeeecCCCccCccccccccccCCCCCEEEEEEc
Confidence            246999999988887764221       23456789999998887643

>d1nexb2 b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Cdc4 propeller domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=95.97  E-value=0.19  Score=37.24  Aligned_cols=65  Identities=9%  Similarity=0.069  Sum_probs=37.7

Q ss_pred             cEEEcCCCcEEEEeCCCcEEEEc-cCCceeEecccCCccccceEEccCCCEEEEEeCCCcEEEEe-cCC
Q 026118           14 DVSVDGNGVLYTATGDGWIKRMH-PNGTWEDWHQVGSQSLLGLTTTKENNVIIVCDSQQGLLKVS-EEG   80 (243)
Q Consensus        14 ~i~~d~~g~l~~~~~~~~i~~~~-~~g~~~~~~~~~~~~~~~i~~~~~g~l~~v~~~~~gl~~~~-~~g   80 (243)
                      ++.+|. ..|..+..++.|..+| .+++..........+..++++.+++.+ +.+..++-+..++ ...
T Consensus        18 c~~~~~-~~l~tgs~Dg~i~vWd~~~~~~~~~l~~H~~~V~~l~~s~~~~l-~s~s~D~~i~iw~~~~~   84 (355)
T d1nexb2          18 CLQFED-NYVITGADDKMIRVYDSINKKFLLQLSGHDGGVWALKYAHGGIL-VSGSTDRTVRVWDIKKG   84 (355)
T ss_dssp             EEEEET-TEEEEEETTTEEEEEETTTTEEEEEEECCSSCEEEEEEETTTEE-EEEETTCCEEEEETTTT
T ss_pred             EEEECC-CEEEEEeCCCeEEEEECCCCcEEEEEECCCCCEEEEEEcCCCEE-EEEeccccccccccccc
Confidence            344442 3466666889999999 455533322211223338888876544 6666555566666 444

>d1w6sa_ b.70.1.1 (A:) Methanol dehydrogenase, heavy chain {Methylobacterium extorquens [TaxId: 408]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: Quinoprotein alcohol dehydrogenase-like
family: Quinoprotein alcohol dehydrogenase-like
domain: Methanol dehydrogenase, heavy chain
species: Methylobacterium extorquens [TaxId: 408]

Probab=95.87  E-value=0.31  Score=40.43  Aligned_cols=112  Identities=19%  Similarity=0.140  Sum_probs=62.4

Q ss_pred             CCcEEEEe-CCCcEEEEc-c-CCceeEecccC----C-------ccccceEEccC----CCEEEEEeCCCcEEEEe-cCC
Q 026118           20 NGVLYTAT-GDGWIKRMH-P-NGTWEDWHQVG----S-------QSLLGLTTTKE----NNVIIVCDSQQGLLKVS-EEG   80 (243)
Q Consensus        20 ~g~l~~~~-~~~~i~~~~-~-~g~~~~~~~~~----~-------~~~~~i~~~~~----g~l~~v~~~~~gl~~~~-~~g   80 (243)
                      +|.||+++ ..+.++.++ . +|+..-.....    .       ....++++-.+    +.++|+++....|+.+| .+|
T Consensus        62 ~g~ly~~t~~~~~v~a~d~~~tG~~~W~~~~~~~~~~~~~~~~~~~~RGv~~~~~~~~~~~~v~~~t~dg~l~Alda~tG  141 (596)
T d1w6sa_          62 DGKMYIHTSFPNNTFALGLDDPGTILWQDKPKQNPAARAVACCDLVNRGLAYWPGDGKTPALILKTQLDGNVAALNAETG  141 (596)
T ss_dssp             TTEEEEECSTTTCEEEEETTCTTSEEEEECCCCCGGGGGGCSSCSCCCCCEEECCCSSSCCEEEEECTTSEEEEEETTTC
T ss_pred             CCEEEEeeCCCCcEEEEeCCCCCCEEEEecCCCCcccccccccccccceeEEecCCCCCceEEEEEeCCCCeEeeccccC
Confidence            68999986 457899888 3 57655321110    0       01125555322    22448888777899999 778


Q ss_pred             -cEEEEeccC---CCcccCCccEEEcCCCcEEEEeCCCCCCcccccccccccCCCceEEEEeCCCCeeEE
Q 026118           81 -VTVLVSQFN---GSQLRFANDVIEASDGSLYFTVSSTKFTPAEYYLDLVSGEPHGVLLKYDPSTNQTSL  146 (243)
Q Consensus        81 -~~~~~~~~~---~~~~~~~~~l~~d~~G~l~v~~~~~~~~~~~~~~~~~~~~~~g~v~~~~~~~~~~~~  146 (243)
                       .........   ......+.  .+ .++.++++.+..+            ...+|.|..+|..||++..
T Consensus       142 ~~~w~~~~~d~~~~~~~t~~P--~v-~~~~vivg~~~~e------------~~~~G~v~A~Da~TG~~~W  196 (596)
T d1w6sa_         142 ETVWKVENSDIKVGSTLTIAP--YV-VKDKVIIGSSGAE------------LGVRGYLTAYDVKTGEQVW  196 (596)
T ss_dssp             CEEEEEECCCGGGTCBCCSCC--EE-ETTEEEECCBCGG------------GTCCCEEEEEETTTCCEEE
T ss_pred             ceeccccccccccccccccCC--cE-ECCeEEEeecccc------------ccccCceEEEECCCCcEEE
Confidence             332221111   11111111  12 2577888754421            2245789999999998764

>d1kb0a2 b.70.1.1 (A:1-573) Quinoprotein alcohol dehydrogenase, N-terminal domain {Comamonas testosteroni [TaxId: 285]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: Quinoprotein alcohol dehydrogenase-like
family: Quinoprotein alcohol dehydrogenase-like
domain: Quinoprotein alcohol dehydrogenase, N-terminal domain
species: Comamonas testosteroni [TaxId: 285]

Probab=95.70  E-value=0.19  Score=41.46  Aligned_cols=113  Identities=13%  Similarity=0.147  Sum_probs=64.1

Q ss_pred             CCcEEEEeCCCcEEEEc-cCCceeEecccC-----------CccccceEEccCCCEEEEEeCCCcEEEEe-cCC-cEEEE
Q 026118           20 NGVLYTATGDGWIKRMH-PNGTWEDWHQVG-----------SQSLLGLTTTKENNVIIVCDSQQGLLKVS-EEG-VTVLV   85 (243)
Q Consensus        20 ~g~l~~~~~~~~i~~~~-~~g~~~~~~~~~-----------~~~~~~i~~~~~g~l~~v~~~~~gl~~~~-~~g-~~~~~   85 (243)
                      +|.||+++.++.|+.+| .+|+..-.....           .....++++. ++++ |+++....++.+| .+| ...-.
T Consensus        77 ~g~vyv~t~~~~v~AlDa~TG~~~W~~~~~~~~~~~~~~~~~~~~~g~~~~-~~~v-~~~t~~g~l~alda~tG~~~W~~  154 (573)
T d1kb0a2          77 DGIMYVSASWSVVHAIDTRTGNRIWTYDPQIDRSTGFKGCCDVVNRGVALW-KGKV-YVGAWDGRLIALDAATGKEVWHQ  154 (573)
T ss_dssp             TTEEEEECGGGCEEEEETTTTEEEEEECCCCCGGGGGGSSSCSCCCCCEEE-TTEE-EEECTTSEEEEEETTTCCEEEEE
T ss_pred             CCEEEEECCCCeEEEEeCCCCCeEEEeCCCCCcccccccccccccccceEE-CCcE-EEEecccceeeeccccccceecc
Confidence            78999999888999999 567654321100           0011134443 4566 8888777899999 778 33222


Q ss_pred             eccCCCccc-CCccEEEcCCCcEEEEeCCCCCCcccccccccccCCCceEEEEeCCCCeeEE
Q 026118           86 SQFNGSQLR-FANDVIEASDGSLYFTVSSTKFTPAEYYLDLVSGEPHGVLLKYDPSTNQTSL  146 (243)
Q Consensus        86 ~~~~~~~~~-~~~~l~~d~~G~l~v~~~~~~~~~~~~~~~~~~~~~~g~v~~~~~~~~~~~~  146 (243)
                      ......... ...+.-+-.++.+++..+..            +....+.|+.+|..+|++..
T Consensus       155 ~~~~~~~~~~~~~~~p~v~~~~vivg~~~~------------~~~~~G~v~a~D~~TG~~~W  204 (573)
T d1kb0a2         155 NTFEGQKGSLTITGAPRVFKGKVIIGNGGA------------EYGVRGYITAYDAETGERKW  204 (573)
T ss_dssp             ETTTTCCSSCBCCSCCEEETTEEEECCBCT------------TTCCBCEEEEEETTTCCEEE
T ss_pred             cCccCCcceEEeecceEEEeccEEEeeccc------------cccccceEEEEecCCcccee
Confidence            211111100 11111112357788865431            12245789999999998654

>d2ovrb2 b.69.4.1 (B:2365-2706) F-box/WD repeat-containing protein 7, FBXW7 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: F-box/WD repeat-containing protein 7, FBXW7
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.46  E-value=0.3  Score=35.83  Aligned_cols=138  Identities=10%  Similarity=0.021  Sum_probs=69.6

Q ss_pred             ceEEccCCCEEEEEeCCCcEEEEe-cCC-cEEEEeccCCCcccCCccEEEcCCCcEEEEeCCCCCCcccccccccccCCC
Q 026118           54 GLTTTKENNVIIVCDSQQGLLKVS-EEG-VTVLVSQFNGSQLRFANDVIEASDGSLYFTVSSTKFTPAEYYLDLVSGEPH  131 (243)
Q Consensus        54 ~i~~~~~g~l~~v~~~~~gl~~~~-~~g-~~~~~~~~~~~~~~~~~~l~~d~~G~l~v~~~~~~~~~~~~~~~~~~~~~~  131 (243)
                      ......++..+..+..++.+..++ ..+ ......   +. .....++.  ++++++++.+                 ..
T Consensus       180 ~~~~~~~~~~l~s~~~dg~i~~~d~~~~~~~~~~~---~~-~~~v~~~~--~~~~~l~s~s-----------------~d  236 (342)
T d2ovrb2         180 VYSLQFDGIHVVSGSLDTSIRVWDVETGNCIHTLT---GH-QSLTSGME--LKDNILVSGN-----------------AD  236 (342)
T ss_dssp             EEEEEECSSEEEEEETTSCEEEEETTTCCEEEEEC---CC-CSCEEEEE--EETTEEEEEE-----------------TT
T ss_pred             cccccCCCCEEEEEeCCCeEEEeecccceeeeEec---cc-ccceeEEe--cCCCEEEEEc-----------------CC
Confidence            344556677756666556677777 555 222111   11 12233443  4455555522                 23


Q ss_pred             ceEEEEeCCCCeeEEeeccc-cc-cceEEEcCCCCEEEEEEcCCCeEEEEEeecCCCcceEEeccC-C---CCCCCceEE
Q 026118          132 GVLLKYDPSTNQTSLVLDGL-YF-ANGVALSEDERFLVVCESWKFRCVKHFLKVSGRTDREIFIDN-L---PGGPDNVNL  205 (243)
Q Consensus       132 g~v~~~~~~~~~~~~~~~~~-~~-~~gi~~~~dg~~l~v~~~~~~~i~~~~~~~~~~~~~~~~~~~-~---~~~~~~i~~  205 (243)
                      +.|..++....+........ .. ..-..++.+++.+ ++...++.|..|++..+..  .+.+... .   .+....+++
T Consensus       237 ~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~s~s~Dg~i~iwd~~tg~~--i~~~~~~~~~~~~~~v~~v~~  313 (342)
T d2ovrb2         237 STVKIWDIKTGQCLQTLQGPNKHQSAVTCLQFNKNFV-ITSSDDGTVKLWDLKTGEF--IRNLVTLESGGSGGVVWRIRA  313 (342)
T ss_dssp             SCEEEEETTTCCEEEEECSTTSCSSCEEEEEECSSEE-EEEETTSEEEEEETTTCCE--EEEEEECTTGGGTCEEEEEEE
T ss_pred             CEEEEEecccccccccccccceeeeceeecccCCCee-EEEcCCCEEEEEECCCCCE--EEEEecccCCCCCCCEEEEEE
Confidence            56888887766554433221 11 1223444566644 4445678999999865322  1222111 1   112345788


Q ss_pred             CCCCCEEEEEec
Q 026118          206 ARDGSFWISIIK  217 (243)
Q Consensus       206 d~~G~lwv~~~~  217 (243)
                      +++|++.++...
T Consensus       314 s~~~~~la~g~~  325 (342)
T d2ovrb2         314 SNTKLVCAVGSR  325 (342)
T ss_dssp             CSSEEEEEEECS
T ss_pred             CCCCCEEEEEeC
Confidence            888765544433

>d1xfda1 b.70.3.1 (A:127-591) Dipeptidyl aminopeptidase-like protein 6, DPP6, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: DPP6 N-terminal domain-like
family: DPP6 N-terminal domain-like
domain: Dipeptidyl aminopeptidase-like protein 6, DPP6, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.35  E-value=0.14  Score=41.20  Aligned_cols=132  Identities=10%  Similarity=-0.032  Sum_probs=65.9

Q ss_pred             cCCCcEEEEeCCCcEEEEc-cCCceeEecccC----CccccceEEccCCCEEEEEeCC---------CcEEEEe-cCC-c
Q 026118           18 DGNGVLYTATGDGWIKRMH-PNGTWEDWHQVG----SQSLLGLTTTKENNVIIVCDSQ---------QGLLKVS-EEG-V   81 (243)
Q Consensus        18 d~~g~l~~~~~~~~i~~~~-~~g~~~~~~~~~----~~~~~~i~~~~~g~l~~v~~~~---------~gl~~~~-~~g-~   81 (243)
                      -+++.++.-+.++.|..++ .+++...+....    -.+. ...+++||+.+++....         .-++.+| .++ .
T Consensus        25 ~~~~~~~~~~~~g~i~~~~~~~~~~~~l~~~~~~~~~~~~-~~~~SpD~~~vl~~~~~~~~~r~s~~~~~~i~d~~~~~~  103 (465)
T d1xfda1          25 ISDTEFIYREQKGTVRLWNVETNTSTVLIEGKKIESLRAI-RYEISPDREYALFSYNVEPIYQHSYTGYYVLSKIPHGDP  103 (465)
T ss_dssp             SSSSCBCCCCSSSCEEEBCGGGCCCEEEECTTTTTTTTCS-EEEECTTSSEEEEEESCCCCSSSCCCSEEEEEESSSCCC
T ss_pred             eCCCcEEEEeCCCcEEEEECCCCCEEEEEcCccccccccc-eeEECCCCCeEEEEEcccceeEeeccccEEEEEccCCce
Confidence            3455444444566788887 344433322111    1223 45688999865554321         1255666 666 5


Q ss_pred             EEEEeccCCCcccCCccEEEcCCCc-EEEEeCCCCCCcccccccccccCCCceEEEEeCCCCeeEEeecc----------
Q 026118           82 TVLVSQFNGSQLRFANDVIEASDGS-LYFTVSSTKFTPAEYYLDLVSGEPHGVLLKYDPSTNQTSLVLDG----------  150 (243)
Q Consensus        82 ~~~~~~~~~~~~~~~~~l~~d~~G~-l~v~~~~~~~~~~~~~~~~~~~~~~g~v~~~~~~~~~~~~~~~~----------  150 (243)
                      +.+.......  ..+.-..++|||+ +.+.-                   .+.||.++..++...++..+          
T Consensus       104 ~~l~~~~~~~--~~l~~~~wSPDG~~iafv~-------------------~~nl~~~~~~~~~~~~lt~~g~~~~i~nG~  162 (465)
T d1xfda1         104 QSLDPPEVSN--AKLQYAGWGPKGQQLIFIF-------------------ENNIYYCAHVGKQAIRVVSTGKEGVIYNGL  162 (465)
T ss_dssp             EECCCTTCCS--CCCSBCCBCSSTTCEEEEE-------------------TTEEEEESSSSSCCEEEECCCBTTTEEEEE
T ss_pred             eeccCccCCc--cccceeeeccCCceEEEEe-------------------cceEEEEecCCCceEEEecccCcceeeccc
Confidence            5543211111  1122235677775 32321                   23466665554444333211          


Q ss_pred             ---------ccccceEEEcCCCCEEEEEEc
Q 026118          151 ---------LYFANGVALSEDERFLVVCES  171 (243)
Q Consensus       151 ---------~~~~~gi~~~~dg~~l~v~~~  171 (243)
                               .....++.|||||++|.+...
T Consensus       163 ~d~vyeee~~~~~~a~~WSPDgk~iaf~~~  192 (465)
T d1xfda1         163 SDWLYEEEILKTHIAHWWSPDGTRLAYAAI  192 (465)
T ss_dssp             CCHHHHHTTSSSSEEEEECTTSSEEEEEEE
T ss_pred             cchhhhhhhccccceEEECCCCCeEEEEEe
Confidence                     112357889999998887643

>d2ebsa1 b.69.13.1 (A:4-430) Oligoxyloglucan reducing end-specific cellobiohydrolase {Yeast (Geotrichum sp. M128) [TaxId: 203496]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Oligoxyloglucan reducing end-specific cellobiohydrolase
family: Oligoxyloglucan reducing end-specific cellobiohydrolase
domain: Oligoxyloglucan reducing end-specific cellobiohydrolase
species: Yeast (Geotrichum sp. M128) [TaxId: 203496]

Probab=95.28  E-value=0.48  Score=37.08  Aligned_cols=150  Identities=9%  Similarity=0.054  Sum_probs=80.9

Q ss_pred             CCcccEEEcCC--CcEEEEeCCCcEEEEccCC-ceeEecccC-------CccccceEEccCC-CEEEEEeCC------Cc
Q 026118           10 NHPEDVSVDGN--GVLYTATGDGWIKRMHPNG-TWEDWHQVG-------SQSLLGLTTTKEN-NVIIVCDSQ------QG   72 (243)
Q Consensus        10 ~~p~~i~~d~~--g~l~~~~~~~~i~~~~~~g-~~~~~~~~~-------~~~~~~i~~~~~g-~l~~v~~~~------~g   72 (243)
                      ..-.+|+++|.  ..||++...++|++-...| .++.+....       .... +|++||.. +.+|++...      .+
T Consensus        12 g~~~~i~~~P~~~~~~ya~~~~gGv~~S~dgG~tW~~~~~~~~~~~~~~~~~~-~iavdp~np~~vy~~tg~~~~~~~~g   90 (427)
T d2ebsa1          12 GYITGIVAHPKTKDLLYARTDIGGAYRWDAGTSKWIPLNDFIEAQDMNIMGTE-SIALDPNNPDRLYLAQGRYVGDEWAA   90 (427)
T ss_dssp             SCEEEEEECSSSTTCEEEEESSSCEEEEETTTTEEEESCTTCCGGGGGGCSEE-EEEEETTEEEEEEEEECSCTTSSCCE
T ss_pred             CcEEEEEECCCCCCEEEEEecCCCEEEEECCCCceEECCCCCCCCCcccccEe-EEEECCCCCCEEEEEeccccCCcCcc
Confidence            45678999873  3689988888898876333 455432110       1122 67888753 344888632      34


Q ss_pred             EEEEecCC--cEEEEeccCC----CcccCCccEEEcCC--CcEEEEeCCCCCCcccccccccccCCCceEEEEeCCCCee
Q 026118           73 LLKVSEEG--VTVLVSQFNG----SQLRFANDVIEASD--GSLYFTVSSTKFTPAEYYLDLVSGEPHGVLLKYDPSTNQT  144 (243)
Q Consensus        73 l~~~~~~g--~~~~~~~~~~----~~~~~~~~l~~d~~--G~l~v~~~~~~~~~~~~~~~~~~~~~~g~v~~~~~~~~~~  144 (243)
                      |++-...|  .+.+......    ........|+++|.  ..+|++..                  .++||+=.-.+..+
T Consensus        91 i~~S~DgG~TW~~~~~~~~~~~~~~~~~~~~~i~v~P~~~~~v~~~~~------------------~~gl~~S~D~G~tW  152 (427)
T d2ebsa1          91 FYVSEDRGQSFTIYESPFPMGANDMGRNNGERLAVNPFNSNEVWMGTR------------------TEGIWKSSDRAKTW  152 (427)
T ss_dssp             EEEESSTTSEEEEEECSSCCCTTSTTTTSCCCEEECTTCTTCEEEECS------------------SSCEEEESSTTSSC
T ss_pred             EEEeCCCCccceeecCCcccCccccCccceeEEEECCCccCccccccc------------------ccceeeecCCCcee
Confidence            55554445  4444322111    11123346889984  45888742                  24677644333344


Q ss_pred             EEeecc------ccccceEEEcCC-CCEEEEEEcCCCeEEE
Q 026118          145 SLVLDG------LYFANGVALSED-ERFLVVCESWKFRCVK  178 (243)
Q Consensus       145 ~~~~~~------~~~~~gi~~~~d-g~~l~v~~~~~~~i~~  178 (243)
                      +.+...      ......++++|. .+.+|++......|++
T Consensus       153 ~~~~~~~~~~~~~~~~~~i~~~p~~~~~~y~~~~~~~giy~  193 (427)
T d2ebsa1         153 TNVTSIPDAFTNGIGYTSVIFDPERNGTIYASATAPQGMYV  193 (427)
T ss_dssp             EECTTSSCCCCSSSCEEEEEECTTSTTCEEEEESSTTCEEE
T ss_pred             eecccCcccccCCccceEEEecccccceeeeeeeeccccee
Confidence            443211      112345777763 4458877665566764

>d1xfda1 b.70.3.1 (A:127-591) Dipeptidyl aminopeptidase-like protein 6, DPP6, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: DPP6 N-terminal domain-like
family: DPP6 N-terminal domain-like
domain: Dipeptidyl aminopeptidase-like protein 6, DPP6, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=94.86  E-value=0.71  Score=36.81  Aligned_cols=76  Identities=5%  Similarity=-0.143  Sum_probs=42.5

Q ss_pred             eeEEeeccccccce-EEEcCCCCEEEEEEcC----CCeEEEEEeecCCCcceEEeccCCCCCCCceEECCCCCEEEEEec
Q 026118          143 QTSLVLDGLYFANG-VALSEDERFLVVCESW----KFRCVKHFLKVSGRTDREIFIDNLPGGPDNVNLARDGSFWISIIK  217 (243)
Q Consensus       143 ~~~~~~~~~~~~~g-i~~~~dg~~l~v~~~~----~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~i~~d~~G~lwv~~~~  217 (243)
                      ..+.+..+...... ++++.+++.+|++...    ...|+++++++.....+..-.......-..+.++++|+.+|-+..
T Consensus       350 ~~~~LT~G~w~V~~i~~~d~~~~~vyF~a~~~~p~~~hly~v~l~g~~~~~~lt~~~~~~~~~~~~~~S~~~~y~v~~~s  429 (465)
T d1xfda1         350 NIQSITSGDWDVTKILAYDEKGNKIYFLSTEDLPRRRQLYSANTVGNFNRQCLSCDLVENCTYFSASFSHSMDFFLLKCE  429 (465)
T ss_dssp             CCCBSCCSSSCEEEEEEEETTTTEEEEEESSSCTTCCEEEEECSSTTCCCBCSSTTSSSSCCCCEEEECTTSSEEEEECC
T ss_pred             eeEEeccCCceEEEEEEEcCCCCEEEEEEeCCCCCceEEEEEECCCCCcceeeccccCCCCCEEEEEECCCCCEEEEEee
Confidence            33444444333334 4689999989987432    345888887764322211100011123356888999988875554


Q ss_pred             C
Q 026118          218 M  218 (243)
Q Consensus       218 ~  218 (243)
                      +
T Consensus       430 ~  430 (465)
T d1xfda1         430 G  430 (465)
T ss_dssp             S
T ss_pred             c
Confidence            4

>d1yfqa_ b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: Cell cycle arrest protein BUB3
domain: Cell cycle arrest protein BUB3
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=94.63  E-value=0.53  Score=34.28  Aligned_cols=109  Identities=8%  Similarity=-0.013  Sum_probs=57.9

Q ss_pred             ceEEccCCCEEEEEeCCCcEEEEe-cCC--cEEEEeccCCCcccCCccEEEcCCC-cEEEEeCCCCCCcccccccccccC
Q 026118           54 GLTTTKENNVIIVCDSQQGLLKVS-EEG--VTVLVSQFNGSQLRFANDVIEASDG-SLYFTVSSTKFTPAEYYLDLVSGE  129 (243)
Q Consensus        54 ~i~~~~~g~l~~v~~~~~gl~~~~-~~g--~~~~~~~~~~~~~~~~~~l~~d~~G-~l~v~~~~~~~~~~~~~~~~~~~~  129 (243)
                      +|+|+|+|++|.++..++-|..++ ..+  ...+......  ...+.++++.+++ .+.++-+                 
T Consensus        16 ~l~fsp~~~~L~s~s~Dg~v~iwd~~~~~~~~~~~~~~~h--~~~V~~v~f~~~~~~~l~sg~-----------------   76 (342)
T d1yfqa_          16 DIKIIPSKSLLLITSWDGSLTVYKFDIQAKNVDLLQSLRY--KHPLLCCNFIDNTDLQIYVGT-----------------   76 (342)
T ss_dssp             EEEEEGGGTEEEEEETTSEEEEEEEETTTTEEEEEEEEEC--SSCEEEEEEEESSSEEEEEEE-----------------
T ss_pred             EEEEeCCCCEEEEEECCCeEEEEEccCCCcceEEEEecCC--CCCEEEEEEeCCCCCEEEEcc-----------------
Confidence            899999999866766554455666 333  2222221111  1346678887764 4444421                 


Q ss_pred             CCceEEEEeCCCCeeEEeeccc--cccceEEEcCCCCEEEEEEcCCCeEEEEEee
Q 026118          130 PHGVLLKYDPSTNQTSLVLDGL--YFANGVALSEDERFLVVCESWKFRCVKHFLK  182 (243)
Q Consensus       130 ~~g~v~~~~~~~~~~~~~~~~~--~~~~gi~~~~dg~~l~v~~~~~~~i~~~~~~  182 (243)
                      ..+.|..++.............  .........++.. ..++......+..++..
T Consensus        77 ~d~~v~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~wd~~  130 (342)
T d1yfqa_          77 VQGEILKVDLIGSPSFQALTNNEANLGICRICKYGDD-KLIAASWDGLIEVIDPR  130 (342)
T ss_dssp             TTSCEEEECSSSSSSEEECBSCCCCSCEEEEEEETTT-EEEEEETTSEEEEECHH
T ss_pred             cccceeeeecccccccccccccccccccccccccccc-cccccccccccceeecc
Confidence            2346777776654433322111  1112233444555 44444566788888765

>d1yfqa_ b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: Cell cycle arrest protein BUB3
domain: Cell cycle arrest protein BUB3
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=91.80  E-value=1.6  Score=31.47  Aligned_cols=76  Identities=18%  Similarity=0.079  Sum_probs=43.3

Q ss_pred             cccccCCcccEEEcCCCc-EEEEeCCCcEEEEcc--CCceeEecc--cCCccccceEEccCC-CEEEEEeCCCcEEEEe-
Q 026118            5 GEGIVNHPEDVSVDGNGV-LYTATGDGWIKRMHP--NGTWEDWHQ--VGSQSLLGLTTTKEN-NVIIVCDSQQGLLKVS-   77 (243)
Q Consensus         5 ~~g~~~~p~~i~~d~~g~-l~~~~~~~~i~~~~~--~g~~~~~~~--~~~~~~~~i~~~~~g-~l~~v~~~~~gl~~~~-   77 (243)
                      .+++-..-.+|++.++|. |.++..++.|..++.  ......+..  ....+..++++.+++ .+++.+...+-+..++ 
T Consensus         7 ~~~h~d~I~~l~fsp~~~~L~s~s~Dg~v~iwd~~~~~~~~~~~~~~~h~~~V~~v~f~~~~~~~l~sg~~d~~v~~w~~   86 (342)
T d1yfqa_           7 EQAPKDYISDIKIIPSKSLLLITSWDGSLTVYKFDIQAKNVDLLQSLRYKHPLLCCNFIDNTDLQIYVGTVQGEILKVDL   86 (342)
T ss_dssp             SSCCSSCEEEEEEEGGGTEEEEEETTSEEEEEEEETTTTEEEEEEEEECSSCEEEEEEEESSSEEEEEEETTSCEEEECS
T ss_pred             CCCCCCCEEEEEEeCCCCEEEEEECCCeEEEEEccCCCcceEEEEecCCCCCEEEEEEeCCCCCEEEEcccccceeeeec
Confidence            344444456899999886 445668898988872  222222211  112333378888765 4535555444566666 


Q ss_pred             cCC
Q 026118           78 EEG   80 (243)
Q Consensus        78 ~~g   80 (243)
                      ..+
T Consensus        87 ~~~   89 (342)
T d1yfqa_          87 IGS   89 (342)
T ss_dssp             SSS
T ss_pred             ccc
Confidence            444

>d1k3ia3 b.69.1.1 (A:151-537) Galactose oxidase, central domain {Fungi (Fusarium sp.) [TaxId: 29916]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Galactose oxidase, central domain
family: Galactose oxidase, central domain
domain: Galactose oxidase, central domain
species: Fungi (Fusarium sp.) [TaxId: 29916]

Probab=91.77  E-value=2  Score=32.48  Aligned_cols=72  Identities=14%  Similarity=-0.024  Sum_probs=46.3

Q ss_pred             CCccEEEcCCCcEEEEeCCCCCCcccccccccccCCCceEEEEeCCCCeeEEeecc--ccccceEEEcCCCCEEEEEEcC
Q 026118           95 FANDVIEASDGSLYFTVSSTKFTPAEYYLDLVSGEPHGVLLKYDPSTNQTSLVLDG--LYFANGVALSEDERFLVVCESW  172 (243)
Q Consensus        95 ~~~~l~~d~~G~l~v~~~~~~~~~~~~~~~~~~~~~~g~v~~~~~~~~~~~~~~~~--~~~~~gi~~~~dg~~l~v~~~~  172 (243)
                      ...+.++.++|.+++.-..                ....+.+||+.+........-  .....+.++.+||+ +|+..-.
T Consensus        77 ~~~~~~~~~~g~i~v~Gg~----------------~~~~~~~yd~~~~~w~~~~~~~~~r~~~~~~~~~dG~-v~v~GG~  139 (387)
T d1k3ia3          77 FCPGISMDGNGQIVVTGGN----------------DAKKTSLYDSSSDSWIPGPDMQVARGYQSSATMSDGR-VFTIGGS  139 (387)
T ss_dssp             SSCEEEECTTSCEEEECSS----------------STTCEEEEEGGGTEEEECCCCSSCCSSCEEEECTTSC-EEEECCC
T ss_pred             ceeEEEEecCCcEEEeecC----------------CCcceeEecCccCcccccccccccccccceeeecCCc-eeeeccc
Confidence            4456678899999987321                124688899998887765321  12234677778998 6655321


Q ss_pred             ------CCeEEEEEeec
Q 026118          173 ------KFRCVKHFLKV  183 (243)
Q Consensus       173 ------~~~i~~~~~~~  183 (243)
                            .+.+.+||+..
T Consensus       140 ~~~~~~~~~v~~yd~~~  156 (387)
T d1k3ia3         140 WSGGVFEKNGEVYSPSS  156 (387)
T ss_dssp             CCSSSCCCCEEEEETTT
T ss_pred             cccccccceeeeecCCC
Confidence                  24578888754

>d1h6la_ b.68.3.1 (A:) Thermostable phytase (3-phytase) {Bacillus amyloliquefaciens [TaxId: 1390]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Thermostable phytase (3-phytase)
family: Thermostable phytase (3-phytase)
domain: Thermostable phytase (3-phytase)
species: Bacillus amyloliquefaciens [TaxId: 1390]

Probab=91.37  E-value=2.3  Score=32.48  Aligned_cols=86  Identities=10%  Similarity=0.131  Sum_probs=48.3

Q ss_pred             eEEEEeCCCCeeEEee-------ccccccceEEE--cCC-CCEEE-EEEcCCCeEEEEEeec--CC-CcceEEeccCCCC
Q 026118          133 VLLKYDPSTNQTSLVL-------DGLYFANGVAL--SED-ERFLV-VCESWKFRCVKHFLKV--SG-RTDREIFIDNLPG  198 (243)
Q Consensus       133 ~v~~~~~~~~~~~~~~-------~~~~~~~gi~~--~~d-g~~l~-v~~~~~~~i~~~~~~~--~~-~~~~~~~~~~~~~  198 (243)
                      .+|.+++..+.+..+.       .....+.|+++  ++. |. +| +.....+.+..|.+..  .. +....+..-..+.
T Consensus       102 ~~~~id~~~~~l~~~~~~~~p~~~~~~~vYGlc~y~~~~~g~-~~afv~~k~G~v~q~~l~~~~~g~v~~~lvr~f~~~~  180 (353)
T d1h6la_         102 EIYAIDGKNGTLQSITDPNRPIASAIDEVYGFSLYHSQKTGK-YYAMVTGKEGEFEQYELNADKNGYISGKKVRAFKMNS  180 (353)
T ss_dssp             EEEEEETTTTEEEECSCSSSCEECSSSSCCCEEEEECTTTCC-EEEEEECSSSEEEEEEEEECTTSSEEEEEEEEEECSS
T ss_pred             EEEEecCcccccccccccccccccccCcceEEEEEecCCCCe-EEEEEEcCCceEEEEEEEcCCCCceeeEeeeccCCCC
Confidence            4788887766655432       12335678888  554 54 33 3334556777776642  21 1111111113445


Q ss_pred             CCCceEECCC-CCEEEEEecCC
Q 026118          199 GPDNVNLARD-GSFWISIIKMD  219 (243)
Q Consensus       199 ~~~~i~~d~~-G~lwv~~~~~~  219 (243)
                      .+.|+++|.+ +.|||+.-+.+
T Consensus       181 q~EGCVvDde~~~LyisEE~~G  202 (353)
T d1h6la_         181 QTEGMAADDEYGSLYIAEEDEA  202 (353)
T ss_dssp             CEEEEEEETTTTEEEEEETTTE
T ss_pred             ccceEEEeCCCCcEEEecCccc
Confidence            6788999866 56999875443

>d1flga_ b.70.1.1 (A:) Ethanol dehydrogenase {Pseudomonas aeruginosa [TaxId: 287]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: Quinoprotein alcohol dehydrogenase-like
family: Quinoprotein alcohol dehydrogenase-like
domain: Ethanol dehydrogenase
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=91.33  E-value=3.1  Score=33.94  Aligned_cols=59  Identities=12%  Similarity=0.154  Sum_probs=39.3

Q ss_pred             CCcEEEEeCCCcEEEEc-cCCceeEecccC----Ccc-----ccceEEccCCCEEEEEeCCCcEEEEe-cCC
Q 026118           20 NGVLYTATGDGWIKRMH-PNGTWEDWHQVG----SQS-----LLGLTTTKENNVIIVCDSQQGLLKVS-EEG   80 (243)
Q Consensus        20 ~g~l~~~~~~~~i~~~~-~~g~~~~~~~~~----~~~-----~~~i~~~~~g~l~~v~~~~~gl~~~~-~~g   80 (243)
                      +|.||+++.++.|+.+| .+|+..-.....    ..+     ..++++. ++++ ++++....++.+| .+|
T Consensus        68 ~g~vy~~t~~~~v~AlDa~TG~~lW~~~~~~~~~~~~~~~~~~rg~a~~-~~~i-~~~t~~~~l~alda~tG  137 (582)
T d1flga_          68 DGVIYVTASYSRLFALDAKTGKRLWTYNHRLPDDIRPCCDVVNRGAAIY-GDKV-FFGTLDASVVALNKNTG  137 (582)
T ss_dssp             TTEEEEEETTTEEEEEESSSCCEEEEEECCCCTTCCCSSCSCCCCCEEE-TTEE-EEEETTTEEEEEESSSC
T ss_pred             CCEEEEeCCCCeEEEEeCCCCCeEEEEcCCCCCccccccccccCCceEe-CCce-EEecCCCeEEEeccccc
Confidence            68999999989999999 568765321100    001     1144543 3456 8888777899999 677

>d2hqsa1 b.68.4.1 (A:163-431) TolB, C-terminal domain {Escherichia coli [TaxId: 562]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: TolB, C-terminal domain
family: TolB, C-terminal domain
domain: TolB, C-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=91.23  E-value=1.7  Score=30.80  Aligned_cols=111  Identities=16%  Similarity=0.057  Sum_probs=56.0

Q ss_pred             ceEEccCCCEEEEEeCCC---cEEEEe-cCC-cEEEEeccCCCcccCCccEEEcCCCcEEEEeCCCCCCccccccccccc
Q 026118           54 GLTTTKENNVIIVCDSQQ---GLLKVS-EEG-VTVLVSQFNGSQLRFANDVIEASDGSLYFTVSSTKFTPAEYYLDLVSG  128 (243)
Q Consensus        54 ~i~~~~~g~l~~v~~~~~---gl~~~~-~~g-~~~~~~~~~~~~~~~~~~l~~d~~G~l~v~~~~~~~~~~~~~~~~~~~  128 (243)
                      ..+++|||+.|.+.....   .++.++ ..+ .+.+... .    ........+++|..++.....              
T Consensus        43 sP~wSPDGk~IAf~~~~~~~~~~~~~~~~~~~~~~~~~~-~----~~~~~~~~spdg~~i~~~~~~--------------  103 (269)
T d2hqsa1          43 SPAWSPDGSKLAYVTFESGRSALVIQTLANGAVRQVASF-P----RHNGAPAFSPDGSKLAFALSK--------------  103 (269)
T ss_dssp             EEEECTTSSEEEEEECTTSSCEEEEEETTTCCEEEEECC-S----SCEEEEEECTTSSEEEEEECT--------------
T ss_pred             eeEECCCCCEEEEEEeeccCcceeeeecccCceeEEeee-e----cccccceecCCCCeeeEeeec--------------
Confidence            678999998654443332   366666 444 4333321 1    223355788998755432210              


Q ss_pred             CCCceEEEEeCCCCeeEEeeccccccceEEEcCCCCEEEEEEcCC--CeEEEEEeec
Q 026118          129 EPHGVLLKYDPSTNQTSLVLDGLYFANGVALSEDERFLVVCESWK--FRCVKHFLKV  183 (243)
Q Consensus       129 ~~~g~v~~~~~~~~~~~~~~~~~~~~~gi~~~~dg~~l~v~~~~~--~~i~~~~~~~  183 (243)
                      .....+..+.....................++.+++.+++.....  ..|+.++.+.
T Consensus       104 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~i~~~~~~~  160 (269)
T d2hqsa1         104 TGSLNLYVMDLASGQIRQVTDGRSNNTEPTWFPDSQNLAFTSDQAGRPQVYKVNING  160 (269)
T ss_dssp             TSSCEEEEEETTTCCEEECCCCSSCEEEEEECTTSSEEEEEECTTSSCEEEEEETTS
T ss_pred             CCccceeecccccccceeeeeccccccccccccccccceecccccCCceEeeeeccc
Confidence            111234444444344333333333333456667777666654433  4577766554

>d1k3ia3 b.69.1.1 (A:151-537) Galactose oxidase, central domain {Fungi (Fusarium sp.) [TaxId: 29916]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Galactose oxidase, central domain
family: Galactose oxidase, central domain
domain: Galactose oxidase, central domain
species: Fungi (Fusarium sp.) [TaxId: 29916]

Probab=88.80  E-value=2.6  Score=31.73  Aligned_cols=80  Identities=16%  Similarity=0.053  Sum_probs=47.5

Q ss_pred             eEEEEeCCCCeeEEeec----cccccceEEEcCCCCEEEEEE-cCCCeEEEEEeecCCCcceEEeccC-CCCCCCceEEC
Q 026118          133 VLLKYDPSTNQTSLVLD----GLYFANGVALSEDERFLVVCE-SWKFRCVKHFLKVSGRTDREIFIDN-LPGGPDNVNLA  206 (243)
Q Consensus       133 ~v~~~~~~~~~~~~~~~----~~~~~~gi~~~~dg~~l~v~~-~~~~~i~~~~~~~~~~~~~~~~~~~-~~~~~~~i~~d  206 (243)
                      .+..||+.++++.....    ......+.++.++|+ +|+.. .....+.+||+...   ........ ....-...+.-
T Consensus        53 ~~~~yd~~t~~w~~~~~~~~~~~~~~~~~~~~~~g~-i~v~Gg~~~~~~~~yd~~~~---~w~~~~~~~~~r~~~~~~~~  128 (387)
T d1k3ia3          53 LTSSWDPSTGIVSDRTVTVTKHDMFCPGISMDGNGQ-IVVTGGNDAKKTSLYDSSSD---SWIPGPDMQVARGYQSSATM  128 (387)
T ss_dssp             EEEEECTTTCCBCCCEEEECSCCCSSCEEEECTTSC-EEEECSSSTTCEEEEEGGGT---EEEECCCCSSCCSSCEEEEC
T ss_pred             EEEEEECCCCcEeecCCCCCCcccceeEEEEecCCc-EEEeecCCCcceeEecCccC---cccccccccccccccceeee
Confidence            46789999887654321    122345778889999 66653 44578899997653   22222221 11122346666


Q ss_pred             CCCCEEEEEe
Q 026118          207 RDGSFWISII  216 (243)
Q Consensus       207 ~~G~lwv~~~  216 (243)
                      .+|++|+...
T Consensus       129 ~dG~v~v~GG  138 (387)
T d1k3ia3         129 SDGRVFTIGG  138 (387)
T ss_dssp             TTSCEEEECC
T ss_pred             cCCceeeecc
Confidence            7888877643

>d1flga_ b.70.1.1 (A:) Ethanol dehydrogenase {Pseudomonas aeruginosa [TaxId: 287]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: Quinoprotein alcohol dehydrogenase-like
family: Quinoprotein alcohol dehydrogenase-like
domain: Ethanol dehydrogenase
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=85.43  E-value=8.1  Score=31.33  Aligned_cols=87  Identities=14%  Similarity=0.067  Sum_probs=50.3

Q ss_pred             CCceEEEEeCCCCeeEEeec-cccccceEEEcCCCCEEEEEEcCCCeEEEEEeecCCCcceEEeccCCCCCCCceEECCC
Q 026118          130 PHGVLLKYDPSTNQTSLVLD-GLYFANGVALSEDERFLVVCESWKFRCVKHFLKVSGRTDREIFIDNLPGGPDNVNLARD  208 (243)
Q Consensus       130 ~~g~v~~~~~~~~~~~~~~~-~~~~~~gi~~~~dg~~l~v~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~i~~d~~  208 (243)
                      ..|.|+.+|+.+|+...-.. ......|. ++-.|..+|+. ..++.++.||..+++.-..........+.|  |....+
T Consensus       464 ~~G~l~AiD~~TG~i~W~~~~~~p~~~g~-lstagglVF~G-t~dg~l~A~Da~TGe~LW~~~~~~~~~~~P--~ty~~~  539 (582)
T d1flga_         464 HVGSLRAMDPVSGKVVWEHKEHLPLWAGV-LATAGNLVFTG-TGDGYFKAFDAKSGKELWKFQTGSGIVSPP--ITWEQD  539 (582)
T ss_dssp             CSEEEEEECTTTCCEEEEEEESSCCCSCC-EEETTTEEEEE-CTTSEEEEEETTTCCEEEEEECSSCCCSCC--EEEEET
T ss_pred             CCCeEEEEcCCCCcEEeecCCCCCCccce-eEEcCCeEEEe-CCCCeEEEEECCCCcEeEEEECCCCccccC--EEEEEC
Confidence            35789999999998765332 22222232 23456656654 567889999876543222111111222234  666688


Q ss_pred             CCEEEEEecCCc
Q 026118          209 GSFWISIIKMDP  220 (243)
Q Consensus       209 G~lwv~~~~~~~  220 (243)
                      |+.||+...++.
T Consensus       540 G~qYv~i~ag~g  551 (582)
T d1flga_         540 GEQYLGVTVGYG  551 (582)
T ss_dssp             TEEEEEEEECCC
T ss_pred             CEEEEEEEeCCC
Confidence            999988776543

>d1kb0a2 b.70.1.1 (A:1-573) Quinoprotein alcohol dehydrogenase, N-terminal domain {Comamonas testosteroni [TaxId: 285]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: Quinoprotein alcohol dehydrogenase-like
family: Quinoprotein alcohol dehydrogenase-like
domain: Quinoprotein alcohol dehydrogenase, N-terminal domain
species: Comamonas testosteroni [TaxId: 285]

Probab=84.97  E-value=2.9  Score=34.05  Aligned_cols=87  Identities=16%  Similarity=0.129  Sum_probs=48.5

Q ss_pred             CceEEEEeCCCCeeEEeeccccccceEEEcCCCCEEEEEEcCCCeEEEEEeecCCCcceEEeccCCCCCCCceEECCCCC
Q 026118          131 HGVLLKYDPSTNQTSLVLDGLYFANGVALSEDERFLVVCESWKFRCVKHFLKVSGRTDREIFIDNLPGGPDNVNLARDGS  210 (243)
Q Consensus       131 ~g~v~~~~~~~~~~~~~~~~~~~~~gi~~~~dg~~l~v~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~i~~d~~G~  210 (243)
                      .+.|..+|+.+|+...-........+=.++-+|..+|+. ..++.++.||..++..-..........+.|  |....+|+
T Consensus       456 ~G~l~AiD~~tGk~~W~~~~~~p~~gg~lstagglVF~G-~~dg~l~A~Da~TGe~LW~~~~~~~~~~~P--~ty~~~Gk  532 (573)
T d1kb0a2         456 FGRLLAWDPVAQKAAWSVEHVSPWNGGTLTTAGNVVFQG-TADGRLVAYHAATGEKLWEAPTGTGVVAAP--STYMVDGR  532 (573)
T ss_dssp             EEEEEEEETTTTEEEEEEEESSSCCCCEEEETTTEEEEE-CTTSEEEEEETTTCCEEEEEECSSCCCSCC--EEEEETTE
T ss_pred             cccEEEeCCCCCceEeeecCCCCCCCceEEEcCCEEEEE-CCCCeEEEEECCCCcEeEEEECCCCccccC--EEEEECCE
Confidence            467999999999876533221111222233356645554 567889999876542211111111122234  55456899


Q ss_pred             EEEEEecCCc
Q 026118          211 FWISIIKMDP  220 (243)
Q Consensus       211 lwv~~~~~~~  220 (243)
                      .||+...+..
T Consensus       533 QYv~v~~G~g  542 (573)
T d1kb0a2         533 QYVSVAVGWG  542 (573)
T ss_dssp             EEEEEEECCC
T ss_pred             EEEEEEeCCC
Confidence            9988877654

>d2ebsa2 b.69.13.1 (A:431-786) Oligoxyloglucan reducing end-specific cellobiohydrolase {Yeast (Geotrichum sp. M128) [TaxId: 203496]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Oligoxyloglucan reducing end-specific cellobiohydrolase
family: Oligoxyloglucan reducing end-specific cellobiohydrolase
domain: Oligoxyloglucan reducing end-specific cellobiohydrolase
species: Yeast (Geotrichum sp. M128) [TaxId: 203496]

Probab=84.06  E-value=7  Score=29.52  Aligned_cols=97  Identities=14%  Similarity=0.172  Sum_probs=46.5

Q ss_pred             cccEEEcCCC-c-EEEEe---CCCcEEEEccCC-ceeEeccc-CCccccceEEcc-CCCEEEEEeCCCcEEEEecCCcEE
Q 026118           12 PEDVSVDGNG-V-LYTAT---GDGWIKRMHPNG-TWEDWHQV-GSQSLLGLTTTK-ENNVIIVCDSQQGLLKVSEEGVTV   83 (243)
Q Consensus        12 p~~i~~d~~g-~-l~~~~---~~~~i~~~~~~g-~~~~~~~~-~~~~~~~i~~~~-~g~l~~v~~~~~gl~~~~~~g~~~   83 (243)
                      ...|++++++ + +|...   ...+|++-...| .+...... ..... .++.|+ +.+++|.+. ..+|++-.+.|...
T Consensus       116 ~g~ia~s~dg~~ivw~~~~~~~~~gv~~StD~G~TW~~~~~~~~~~~~-~i~~d~~~~~~~Ya~~-~g~ly~StDgG~TW  193 (356)
T d2ebsa2         116 GSTIAVDASGSQIVWSTKLDEQASGPWYSHDYGKTWSVPAGDLKAQTA-NVLSDKVQDGTFYATD-GGKFFVSTDGGKSY  193 (356)
T ss_dssp             CCEEEECTTSCCEEEECCCTTCCSCCEEESSTTSCCBCCEESCCSCCS-CEEECSSSTTCEEEEE-TTEEEEESSTTSEE
T ss_pred             cceEEEecCCCccEEEecccCCCcceEEEcCCCcceEEcCCCCCCCcc-EEEEeCcCCceEEecc-cceEEEeCCCcccc
Confidence            3457888765 3 45443   345566655333 23322111 11122 466664 445536655 45677665555322


Q ss_pred             EEeccCCCcccCCccEEEcC--CCcEEEEe
Q 026118           84 LVSQFNGSQLRFANDVIEAS--DGSLYFTV  111 (243)
Q Consensus        84 ~~~~~~~~~~~~~~~l~~d~--~G~l~v~~  111 (243)
                      ... ....+......++++|  .|.+|++.
T Consensus       194 ~~~-~~~~~~~~~~~~~v~p~~~g~v~v~~  222 (356)
T d2ebsa2         194 AAK-GAGLVTGTSLMPAVNPWVAGDVWVPV  222 (356)
T ss_dssp             EEC-CBTCCCCCCCCCEECTTSTTCEEEEE
T ss_pred             ccc-ccCCccccceeEEEEeccCCceeecc
Confidence            111 1111222333456766  47899975

>d1kv9a2 b.70.1.1 (A:1-560) Quinoprotein alcohol dehydrogenase, N-terminal domain {Pseudomonas putida, hk5 [TaxId: 303]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: Quinoprotein alcohol dehydrogenase-like
family: Quinoprotein alcohol dehydrogenase-like
domain: Quinoprotein alcohol dehydrogenase, N-terminal domain
species: Pseudomonas putida, hk5 [TaxId: 303]

Probab=83.76  E-value=3.3  Score=33.58  Aligned_cols=88  Identities=14%  Similarity=0.074  Sum_probs=48.8

Q ss_pred             CceEEEEeCCCCeeEEeeccccccceEEEcCCCCEEEEEEcCCCeEEEEEeecCCCcceEEeccCCCCCCCceEECCCCC
Q 026118          131 HGVLLKYDPSTNQTSLVLDGLYFANGVALSEDERFLVVCESWKFRCVKHFLKVSGRTDREIFIDNLPGGPDNVNLARDGS  210 (243)
Q Consensus       131 ~g~v~~~~~~~~~~~~~~~~~~~~~gi~~~~dg~~l~v~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~i~~d~~G~  210 (243)
                      .+.|..+|+.+|+...-........+-.+.-.|..+|+. ..++.++.||.+++..-..........+.|  |....+|+
T Consensus       437 ~G~l~A~D~~tGk~~W~~~~~~~~~gg~l~TagglVF~G-~~dg~l~A~Da~tGe~LW~~~l~~~~~~~P--~ty~~dGk  513 (560)
T d1kv9a2         437 SGALLAWDPVKQKAAWKVPYPTHWNGGTLSTAGNLVFQG-TAAGQMHAYSADKGEALWQFEAQSGIVAAP--MTFELAGR  513 (560)
T ss_dssp             EEEEEEEETTTTEEEEEEEESSSCCCCEEEETTTEEEEE-CTTSEEEEEETTTCCEEEEEECSSCCCSCC--EEEEETTE
T ss_pred             ccceEEEeCCCCeEeeeccCCCCCCCceeEECCCEEEEE-CCCCcEEEEECCCCcEeEEEECCCCccccC--EEEEECCE
Confidence            478999999999876432211111121222345545554 567889999877543222111111222233  66567899


Q ss_pred             EEEEEecCCch
Q 026118          211 FWISIIKMDPK  221 (243)
Q Consensus       211 lwv~~~~~~~~  221 (243)
                      .||+...++..
T Consensus       514 qyv~v~aG~g~  524 (560)
T d1kv9a2         514 QYVAIMAGWGG  524 (560)
T ss_dssp             EEEEEEECCCS
T ss_pred             EEEEEEeCCCc
Confidence            89887766543

>d2ebsa1 b.69.13.1 (A:4-430) Oligoxyloglucan reducing end-specific cellobiohydrolase {Yeast (Geotrichum sp. M128) [TaxId: 203496]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Oligoxyloglucan reducing end-specific cellobiohydrolase
family: Oligoxyloglucan reducing end-specific cellobiohydrolase
domain: Oligoxyloglucan reducing end-specific cellobiohydrolase
species: Yeast (Geotrichum sp. M128) [TaxId: 203496]

Probab=83.47  E-value=7.9  Score=29.62  Aligned_cols=116  Identities=7%  Similarity=0.041  Sum_probs=62.6

Q ss_pred             CccccceEEccC-CCEEEEEeCCCcEEEEecCC--cEEEEeccC--CCcccCCccEEEcCC--CcEEEEeCCCCCCcccc
Q 026118           49 SQSLLGLTTTKE-NNVIIVCDSQQGLLKVSEEG--VTVLVSQFN--GSQLRFANDVIEASD--GSLYFTVSSTKFTPAEY  121 (243)
Q Consensus        49 ~~~~~~i~~~~~-g~l~~v~~~~~gl~~~~~~g--~~~~~~~~~--~~~~~~~~~l~~d~~--G~l~v~~~~~~~~~~~~  121 (243)
                      +... +|+++|. .+++|++....||++-...|  .+.+.....  ......+.+|++||.  ..+|+++...       
T Consensus        12 g~~~-~i~~~P~~~~~~ya~~~~gGv~~S~dgG~tW~~~~~~~~~~~~~~~~~~~iavdp~np~~vy~~tg~~-------   83 (427)
T d2ebsa1          12 GYIT-GIVAHPKTKDLLYARTDIGGAYRWDAGTSKWIPLNDFIEAQDMNIMGTESIALDPNNPDRLYLAQGRY-------   83 (427)
T ss_dssp             SCEE-EEEECSSSTTCEEEEESSSCEEEEETTTTEEEESCTTCCGGGGGGCSEEEEEEETTEEEEEEEEECSC-------
T ss_pred             CcEE-EEEECCCCCCEEEEEecCCCEEEEECCCCceEECCCCCCCCCcccccEeEEEECCCCCCEEEEEeccc-------
Confidence            3444 8889865 34448888667898877555  333321111  112234567899985  4688875321       


Q ss_pred             cccccccCCCceEEEEeCCCCeeEEeeccc---------cccceEEEcCC-CCEEEEEEcCCCeEEE
Q 026118          122 YLDLVSGEPHGVLLKYDPSTNQTSLVLDGL---------YFANGVALSED-ERFLVVCESWKFRCVK  178 (243)
Q Consensus       122 ~~~~~~~~~~g~v~~~~~~~~~~~~~~~~~---------~~~~gi~~~~d-g~~l~v~~~~~~~i~~  178 (243)
                           .....++||+=.-.+..++.+....         .....|+++|. .+.+|++.. .+.|++
T Consensus        84 -----~~~~~~gi~~S~DgG~TW~~~~~~~~~~~~~~~~~~~~~i~v~P~~~~~v~~~~~-~~gl~~  144 (427)
T d2ebsa1          84 -----VGDEWAAFYVSEDRGQSFTIYESPFPMGANDMGRNNGERLAVNPFNSNEVWMGTR-TEGIWK  144 (427)
T ss_dssp             -----TTSSCCEEEEESSTTSEEEEEECSSCCCTTSTTTTSCCCEEECTTCTTCEEEECS-SSCEEE
T ss_pred             -----cCCcCccEEEeCCCCccceeecCCcccCccccCccceeEEEECCCccCccccccc-ccceee
Confidence                 0112346765443333444443211         12245889884 455887743 455764

>d2ad6a1 b.70.1.1 (A:1-571) Methanol dehydrogenase, heavy chain {Methylophilus methylotrophus, w3a1 [TaxId: 17]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: Quinoprotein alcohol dehydrogenase-like
family: Quinoprotein alcohol dehydrogenase-like
domain: Methanol dehydrogenase, heavy chain
species: Methylophilus methylotrophus, w3a1 [TaxId: 17]

Probab=82.09  E-value=3  Score=33.97  Aligned_cols=84  Identities=11%  Similarity=-0.020  Sum_probs=47.2

Q ss_pred             CceEEEEeCCCCeeEEeec-cccccceEEEcCCCCEEEEEEcCCCeEEEEEeecCCCcceEEeccCCCCCCCceEECCCC
Q 026118          131 HGVLLKYDPSTNQTSLVLD-GLYFANGVALSEDERFLVVCESWKFRCVKHFLKVSGRTDREIFIDNLPGGPDNVNLARDG  209 (243)
Q Consensus       131 ~g~v~~~~~~~~~~~~~~~-~~~~~~gi~~~~dg~~l~v~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~i~~d~~G  209 (243)
                      .|.|..+|+.+|+...-.. ......+.... .+..+|++ ..++.++.||.+++..-....+.....+.|  |....+|
T Consensus       443 ~G~l~AiD~~TG~~~W~~~~~~~~~~g~l~T-agglVf~G-~~dg~l~A~Da~tGe~lW~~~l~~~~~a~P--~ty~~dG  518 (571)
T d2ad6a1         443 MGQIRAFDLTTGKAKWTKWEKFAAWGGTLYT-KGGLVWYA-TLDGYLKALDNKDGKELWNFKMPSGGIGSP--MTYSFKG  518 (571)
T ss_dssp             CEEEEEECTTTCCEEEEEEESSCCCSBCEEE-TTTEEEEE-CTTSEEEEEETTTCCEEEEEECSSCCCSCC--EEEEETT
T ss_pred             cccEEEeccCCCceeeEcCCCCCCCcceeEe-cCCEEEEE-CCCCeEEEEECCCCcEEEEEECCCCceecc--eEEEECC
Confidence            4679999999998764322 21222233222 45546665 567889999876542221111111122233  5555689


Q ss_pred             CEEEEEecC
Q 026118          210 SFWISIIKM  218 (243)
Q Consensus       210 ~lwv~~~~~  218 (243)
                      +.||+...+
T Consensus       519 kqYi~v~~g  527 (571)
T d2ad6a1         519 KQYIGSMYG  527 (571)
T ss_dssp             EEEEEEEEC
T ss_pred             EEEEEEEec
Confidence            999987665

>d1qfma1 b.69.7.1 (A:1-430) Prolyl oligopeptidase, N-terminal domain {Pig (Sus scrofa) [TaxId: 9823]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Peptidase/esterase 'gauge' domain
family: Prolyl oligopeptidase, N-terminal domain
domain: Prolyl oligopeptidase, N-terminal domain
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=80.69  E-value=10  Score=29.13  Aligned_cols=103  Identities=14%  Similarity=0.014  Sum_probs=55.3

Q ss_pred             ccEEEcCCCcEEE-EeCCCCCCcccccccccccCCCceEEEEeCCCCeeEEeeccccccceEEEcCCCCEEEEEEcC---
Q 026118           97 NDVIEASDGSLYF-TVSSTKFTPAEYYLDLVSGEPHGVLLKYDPSTNQTSLVLDGLYFANGVALSEDERFLVVCESW---  172 (243)
Q Consensus        97 ~~l~~d~~G~l~v-~~~~~~~~~~~~~~~~~~~~~~g~v~~~~~~~~~~~~~~~~~~~~~gi~~~~dg~~l~v~~~~---  172 (243)
                      .+++++|+|++.. +.+.             .+...-.|+.+|.++++.....-......++++++|++.+|.+...   
T Consensus       128 ~~~~~Spd~~~la~s~d~-------------~G~e~~~l~v~Dl~tg~~~~~~i~~~~~~~~~W~~D~~~~~Y~~~~~~~  194 (430)
T d1qfma1         128 RGYAFSEDGEYFAYGLSA-------------SGSDWVTIKFMKVDGAKELPDVLERVKFSCMAWTHDGKGMFYNAYPQQD  194 (430)
T ss_dssp             EEEEECTTSSEEEEEEEE-------------TTCSCEEEEEEETTTTEEEEEEEEEECSCCEEECTTSSEEEEEECCCCS
T ss_pred             cceEecCCCCEEEEEecc-------------ccCchheeEEeccCcceecccccccccccceEEcCCCCEEEEEEecccc
Confidence            4567889987443 3221             1122346888999999865432111223578999999988776421   


Q ss_pred             ------------CCeEEEEEeecCCCcceEEeccC-CCCCCCceEECCCCCEE
Q 026118          173 ------------KFRCVKHFLKVSGRTDREIFIDN-LPGGPDNVNLARDGSFW  212 (243)
Q Consensus       173 ------------~~~i~~~~~~~~~~~~~~~~~~~-~~~~~~~i~~d~~G~lw  212 (243)
                                  ...|++..+..+......++... ...+..++...++|+..
T Consensus       195 ~~~~~~~~~~~~~~~v~~h~lgt~~~~d~~v~~e~d~~~~~~~~~~s~d~~~l  247 (430)
T d1qfma1         195 GKSDGTETSTNLHQKLYYHVLGTDQSEDILCAEFPDEPKWMGGAELSDDGRYV  247 (430)
T ss_dssp             SCCSSSCCCCCCCCEEEEEETTSCGGGCEEEECCTTCTTCEEEEEECTTSCEE
T ss_pred             CcccccccccCCcceEEEEECCCCccccccccccccCCceEEeeeccCCccee
Confidence                        23566666543222222233211 11223345567777743