Citrus Sinensis ID: 026156

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240--
Protein Sequence
MYAGGYVAEVVGLSPNATEKDIHEFFSHCGDPVHVEIIRSGECGGTAYVTFSNAYALETAVLLSGATIVDQPVCIIRWGEYTDEPNPWISSWGFDENSGSTTTHVGQFVSTPGEAVTVAQDAVKTMIAKGYVLSKDALVKAKALDESYGLSASAAAKVAELSNRIGLTDKINASMEAIKSVDEKYHVSDVTKSAASFTGKTAVAAGTAVVNSRYFAKGALWVSGVLERAAKAAADLGAHGAK
Secondary Structure (PSIPRED)
ccccccEEEEEcccccccHHHHHHHcccccccEEEEEEEccccccEEEEEEccHHHHHHHHHHHccccccEEEEEEEccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHccccHHHHHHHHHHHHHHccccHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHcccccccHHHHccHHHHHHHHHHHHHHHHHHHHcccc
Secondary Structure Prediction (SSPRO)
cccccEEEEEEcccccccHHHHHHHHHccccEEEEEEEccccccEEEEEEEccHHHHHHHHHHcccEEcccEEEEEEcccccccccccccccccccccccccccccccccccHHHccHHHHHHHHHHHcccEEcHHHHHHHHHHHHHccccHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHHHHHcccc
Coil and Loop (DISEMBL)
MYAGGYVAEvvglspnatekDIHEFfshcgdpvhVEIIRsgecggtayVTFSNAYALETAVLLSgativdqpvciirwgeytdepnpwisswgfdensgsttthvgqfvstpgeaVTVAQDAVKTMIAKGYVLSKDALVKAKALDESYGLSASAAAKVAELSNRIGLTDKINASMEAIKSVdekyhvsdvtksaasftgKTAVAAGTAVVNSRYFAKGALWVSGVLERAAKAAADLGAHGAK
Flexible Loop (DISEMBL)
MYAGGYVAEVVGLSPNATEKDIHEFFSHCGDPVHVEIIRSGECGGTAYVTFSNAYALETAVLLSGATIVDQPVCIIRWGEYTDEPNPWISSWGFDENSGSTTTHVGQFVSTPGEAVTVAQDAVKTMIAKGYVLSKDALVKAKALDESYGLSASAAAKVAELSNRIGLTDKINASMEAIKSVDEKYHVSDVTKSAASFTGKTAVAAGTAVVNSRYFAKGALWVSGVLERAAKAAADLGAHGAK
Low Complexity Region (SEG)
MYAGGYVAEVVGLSPNATEKDIHEFFSHCGDPVHVEIIRSGECGGTAYVTFSNAYALETAVLLSGATIVDQPVCIIRWGEYTDEPNPWISSWGFDENSGSTTTHVGQFVSTPGEAVTVAQDAVKTMIAKGYVLSKDALVKAKALDESYGLSASAAAKVAELSNRIGLTDKINASMEAIKSVDEKYHVSDVTKSAASFtgktavaagtavvNSRYFAKGALWVSGVLERaakaaadlgahgak
Disordered region (IsUnstruct)
****GYVAEVVGLSPNATEKDIHEFFSHCGDPVHVEIIRSGECGGTAYVTFSNAYALETAVLLSGATIVDQPVCIIRWGEYTDEPNPWISSWGFDENSGSTTTHVGQFVSTPGEAVTVAQDAVKTMIAKGYVLSKDALVKAKALDESYGLSASAAAKVAELSNRIGLTDKINASMEAIKSVDEKYHVSDVTKSAASFTGKTAVAAGTAVVNSRYFAKGALWVSGVLERAA************
Disordered Region (DISOPRED)
***GGYV*EVVGLSPNATEKDIHEFFSHCGDPVHVEIIRSGECGGTAYVTFSNAYALETAVLLSGATIVDQPVCIIRW*****************************************************************LDE*YGLSASAAAKVA*LS****L*****ASM***************TKSAASFTGKTAVA*GTAVVNSRYFAKGALWVSGVLERAAK***********
Disordered Region (DISEMBL)
MYAGGYVAEVVGLSPNATEKDIHEFFSHCGDPVHVEIIRSGECGGTAYVTFSNAYALETAVLLSGATIVDQPVCIIRWGEYTDEPNPWISSWGFDENSGSTTTHVGQFVSTPGEAVTVAQDAVKTMIAKGYVLSKDALVKAKALDESYGLSASAAAKVAELSNRIGLTDKINASMEAIKSVDEKYHVSDVTKSAASFTGKTAVAAGTAVVNSRYFAKGALWVSGVLERAAKAAADLGAHGAK
Disordered Region (DISPRO)
****GYVAEVVGLSPNATEKDIHEFFSHCGDPVHVEIIRSGECGGTAYVTFSNAYALETAVLLSGATIVDQPVCIIRWGEY********************************EAVTVAQDAVKTMIAKGYVLSKDALVKAKALDESYGLSASAAAKVAELSNRIGLTDKINASMEAIKSVDEKYHVSDVTKSAASFTGKTAVAAGTAVVNSRYFAKGALWVSGVLERAAKAAADLG*****
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
ooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Transmembrane Helix (MEMSAT)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MYAGGYVAEVVGLSPNATEKDIHEFFSHCGDPVHVEIIRSGECGGTAYVTFSNAYALETAVLLSGATIVDQPVCIIRWGEYTDEPNPWISSWGFDENSGSTTTHVGQFVSTPGEAVTVAQDAVKTMIAKGYVLSKDALVKAKALDESYGLSASAAAKVAELSNRIGLTDKINASMEAIKSVDEKYHVSDVTKSAASFTGKTAVAAGTAVVNSRYFAKGALWVSGVLERAAKAAADLGAHGAK
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	242	2.2.26 [Sep-21-2011]
P87216	257	Protein vip1 OS=Schizosac	yes	no	0.603	0.568	0.291	1e-09

>sp|P87216|VIPI_SCHPO Protein vip1 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=vip1 PE=1 SV=1

 Score = 63.2 bits (152), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 54/185 (29%), Positives = 87/185 (47%), Gaps = 39/185 (21%)

Query: 10  VVGLSPNATEKDIHEFFSHCGDPVHVEIIRSGECGGTAYVTFSNAYALETAVLLSGATIV 69
           V  +SP  TEK I +FFS CG   ++   +SGE   TA + F    A +TA+LL  A + 
Sbjct: 7   VTNISPEVTEKQISDFFSFCGKVSNISTEKSGET-QTAKIQFERPSATKTALLLQDALLG 65

Query: 70  DQPVCIIRWGEYTDEPNPWISSWGFDENSGSTTTHVGQFVSTPGEAVTVAQDAVKT---- 125
              + I      T E          D  + STT   G      G+     +D  ++    
Sbjct: 66  QNKIQI------TSE----------DGGAASTTDQGG----AGGDQAARQEDKPRSAIIS 105

Query: 126 -MIAKGYVLSKDALVKAKALDESYGLSASAAAKVAELSNRIGLTDKINASMEAIKSVDEK 184
            ++++GY LS   L K+  LD+SYG+S          S   G+   + +++  ++SV+E+
Sbjct: 106 ELLSRGYHLSDVTLEKSIQLDQSYGVS----------SKFKGI---LESALSGVRSVNER 152

Query: 185 YHVSD 189
           YHV++
Sbjct: 153 YHVTE 157

Schizosaccharomyces pombe (strain 972 / ATCC 24843) (taxid: 284812)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	242
296082886	235	unnamed protein product [Vitis vinifera]	0.962	0.991	0.679	6e-82
224140969	248	predicted protein [Populus trichocarpa]	0.979	0.955	0.649	4e-79
147791771	262	hypothetical protein VITISV_036652 [Viti	0.962	0.889	0.618	5e-79
225452761	262	PREDICTED: protein vip1-like isoform 2 [	0.962	0.889	0.618	9e-79
224140971	231	predicted protein [Populus trichocarpa]	0.933	0.978	0.649	3e-78
388511771	245	unknown [Lotus japonicus]	0.987	0.975	0.612	2e-76
255552904	240	nucleic acid binding protein, putative [	0.921	0.929	0.649	6e-76
48209876	244	hypothetical protein [Solanum demissum]	0.991	0.983	0.626	3e-75
418731492	245	RNA recognition motif containing protein	0.991	0.979	0.628	9e-75
356500407	244	PREDICTED: uncharacterized protein LOC10	0.987	0.979	0.591	3e-74

>gi|296082886|emb|CBI22187.3| unnamed protein product [Vitis vinifera]

 Score =  309 bits (792), Expect = 6e-82,   Method: Compositional matrix adjust.
 Identities = 165/243 (67%), Positives = 187/243 (76%), Gaps = 10/243 (4%)

Query: 1   MYAGGYVAEVVGLSPNATEKDIHEFFSHCGDPVHVEIIRSGECGGTAYVTFSNAYALETA 60
           MY G Y AEV  LSP ATEKD+++FF HCG   H+EIIRSGEC  TAYVTF + YALETA
Sbjct: 1   MYPGAYTAEVTCLSPKATEKDVYDFFIHCGMIEHLEIIRSGECARTAYVTFRDFYALETA 60

Query: 61  VLLSGATIVDQPVCIIRWGEYTDEPNPWI-SSWGFDENSGSTTTHVGQFVSTPGEAVTVA 119
           VLLSGATIVDQ VCI  WG Y DE +PW  SSW ++ NS +TT         P EAVTVA
Sbjct: 61  VLLSGATIVDQRVCISGWGIYADESDPWSNSSWNYEINSMATT---------PREAVTVA 111

Query: 120 QDAVKTMIAKGYVLSKDALVKAKALDESYGLSASAAAKVAELSNRIGLTDKINASMEAIK 179
           Q+ V TMIAKGYVL KDAL+KAKA DE++G+SA+AAAK+AELS RIGLTDKI A +EA++
Sbjct: 112 QEVVTTMIAKGYVLGKDALIKAKAFDEAHGVSAAAAAKIAELSKRIGLTDKIYAGVEAVR 171

Query: 180 SVDEKYHVSDVTKSAASFTGKTAVAAGTAVVNSRYFAKGALWVSGVLERAAKAAADLGAH 239
           SVDEKYH+ + TKSAA  TGKT VAA  A VNS YFAKGALWVSG+L RAA AAADLG  
Sbjct: 172 SVDEKYHLLEFTKSAAVVTGKTTVAAANAFVNSSYFAKGALWVSGILTRAANAAADLGNK 231

Query: 240 GAK 242
           G K
Sbjct: 232 GNK 234

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224140969|ref|XP_002323849.1| predicted protein [Populus trichocarpa] gi|222866851|gb|EEF03982.1| predicted protein [Populus trichocarpa]

 Score =  300 bits (767), Expect = 4e-79,   Method: Compositional matrix adjust.
 Identities = 161/248 (64%), Positives = 186/248 (75%), Gaps = 11/248 (4%)

Query: 1   MYAGGYVAEVVGLSPNATEKDIHEFFSHCGDPVHVEIIRSGECGGTAYVTFSNAYALETA 60
           MY GGY AEV  LSP A EKD++EFFSHCG   HVEIIRSGE   TAYVTF +AY L+TA
Sbjct: 1   MYPGGYTAEVTSLSPKAEEKDVYEFFSHCGAIEHVEIIRSGEHACTAYVTFKDAYGLQTA 60

Query: 61  VLLSGATIVDQPVCIIRWGEYTDEPNPWISSWGFDENSGSTTTHVGQFVSTPGEAVTVAQ 120
           +LLS  TIVDQ VCI  WG + DE + W SS   + N+ S    +  FVSTPGEAVTVAQ
Sbjct: 61  ILLSATTIVDQRVCITHWGTFVDEFDAWGSSSKDEGNTSSAVISLLVFVSTPGEAVTVAQ 120

Query: 121 DAVKTMIAKGYVLSKDALVKAKALDESYGLSASAAAKVAELSNRIGLTDKINASMEAIKS 180
           + VKTM++KGY+L KDA+VKAKA DES+ + A+AAAKV+ELSNRIGLTDKI A ME +K 
Sbjct: 121 EVVKTMLSKGYILGKDAMVKAKAFDESHQVLATAAAKVSELSNRIGLTDKIYAGMETVKC 180

Query: 181 VDEKYHVSDVTKSAASFTGKTAVAAGT-----------AVVNSRYFAKGALWVSGVLERA 229
           VDEKYHVS+ TKSAAS TG  AV+A T           AVVNS YFAKGALWVSGVL +A
Sbjct: 181 VDEKYHVSEFTKSAASVTGTAAVSAATFTGKTAVAAANAVVNSTYFAKGALWVSGVLTQA 240

Query: 230 AKAAADLG 237
           A+AAAD+G
Sbjct: 241 AEAAADMG 248

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|147791771|emb|CAN61841.1| hypothetical protein VITISV_036652 [Vitis vinifera]

 Score =  300 bits (767), Expect = 5e-79,   Method: Compositional matrix adjust.
 Identities = 167/270 (61%), Positives = 188/270 (69%), Gaps = 37/270 (13%)

Query: 1   MYAGGYVAEVVGLSPNATEKDIHEFFSHCGDPVHVEIIRSGECGGTAYVTFSNAYALETA 60
           MY G Y AEV  LSP ATEKD+++FF HCG   H+EIIRSGEC  TAYVTF + YALETA
Sbjct: 1   MYPGAYTAEVTCLSPKATEKDVYDFFIHCGMIEHLEIIRSGECARTAYVTFRDFYALETA 60

Query: 61  VLLSGATIVDQPVCIIRWGEYTDEPNPWI-SSWGFDENSGSTTTHVGQFVSTPGEAVTVA 119
           VLLSGATIVDQ VCI  WG Y DE +PW  SSW ++ NS +T         TP EAVTVA
Sbjct: 61  VLLSGATIVDQRVCISGWGIYADESDPWSNSSWNYESNSMAT---------TPREAVTVA 111

Query: 120 QDAVKTMIAKGYVLSKDALVKAKALDESYGLSASAAAKVAELSNRIGLTDKINASMEAIK 179
           Q+ V TMIAKGYVL KDAL+KAKA DE++G+SA+AAAK+AELS RIGLTDKI A +EA++
Sbjct: 112 QEVVTTMIAKGYVLGKDALIKAKAFDEAHGVSAAAAAKIAELSKRIGLTDKIYAGVEAVR 171

Query: 180 SVDEKYHVS---------------------------DVTKSAASFTGKTAVAAGTAVVNS 212
           SVDEKYHVS                           + TKSAA  TGKT VAA  A VNS
Sbjct: 172 SVDEKYHVSEFSKSAANKIYGGVEAARAVEDRYQLLEFTKSAAVVTGKTTVAAANAFVNS 231

Query: 213 RYFAKGALWVSGVLERAAKAAADLGAHGAK 242
            YFAKGALWVSG+L RAA AAADLG  G K
Sbjct: 232 SYFAKGALWVSGILTRAANAAADLGNKGNK 261

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225452761|ref|XP_002283067.1| PREDICTED: protein vip1-like isoform 2 [Vitis vinifera] gi|225452763|ref|XP_002283061.1| PREDICTED: protein vip1-like isoform 1 [Vitis vinifera]

 Score =  298 bits (764), Expect = 9e-79,   Method: Compositional matrix adjust.
 Identities = 167/270 (61%), Positives = 188/270 (69%), Gaps = 37/270 (13%)

Query: 1   MYAGGYVAEVVGLSPNATEKDIHEFFSHCGDPVHVEIIRSGECGGTAYVTFSNAYALETA 60
           MY G Y AEV  LSP ATEKD+++FF HCG   H+EIIRSGEC  TAYVTF + YALETA
Sbjct: 1   MYPGAYTAEVTCLSPKATEKDVYDFFIHCGMIEHLEIIRSGECARTAYVTFRDFYALETA 60

Query: 61  VLLSGATIVDQPVCIIRWGEYTDEPNPWI-SSWGFDENSGSTTTHVGQFVSTPGEAVTVA 119
           VLLSGATIVDQ VCI  WG Y DE +PW  SSW ++ NS +T         TP EAVTVA
Sbjct: 61  VLLSGATIVDQRVCISGWGIYADESDPWSNSSWNYEINSMAT---------TPREAVTVA 111

Query: 120 QDAVKTMIAKGYVLSKDALVKAKALDESYGLSASAAAKVAELSNRIGLTDKINASMEAIK 179
           Q+ V TMIAKGYVL KDAL+KAKA DE++G+SA+AAAK+AELS RIGLTDKI A +EA++
Sbjct: 112 QEVVTTMIAKGYVLGKDALIKAKAFDEAHGVSAAAAAKIAELSKRIGLTDKIYAGVEAVR 171

Query: 180 SVDEKYHVS---------------------------DVTKSAASFTGKTAVAAGTAVVNS 212
           SVDEKYHVS                           + TKSAA  TGKT VAA  A VNS
Sbjct: 172 SVDEKYHVSEFSKSAANKIYGGVEAARAVEDRYQLLEFTKSAAVVTGKTTVAAANAFVNS 231

Query: 213 RYFAKGALWVSGVLERAAKAAADLGAHGAK 242
            YFAKGALWVSG+L RAA AAADLG  G K
Sbjct: 232 SYFAKGALWVSGILTRAANAAADLGNKGNK 261

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224140971|ref|XP_002323850.1| predicted protein [Populus trichocarpa] gi|222866852|gb|EEF03983.1| predicted protein [Populus trichocarpa]

 Score =  297 bits (760), Expect = 3e-78,   Method: Compositional matrix adjust.
 Identities = 154/237 (64%), Positives = 178/237 (75%), Gaps = 11/237 (4%)

Query: 1   MYAGGYVAEVVGLSPNATEKDIHEFFSHCGDPVHVEIIRSGECGGTAYVTFSNAYALETA 60
           MY GGY AEV  LSP A EKD++EFFSHCG   HVEIIRSGE   TAYVTF +AY L+TA
Sbjct: 1   MYPGGYTAEVTSLSPKAEEKDVYEFFSHCGAIEHVEIIRSGEYACTAYVTFKDAYGLQTA 60

Query: 61  VLLSGATIVDQPVCIIRWGEYTDEPNPWISSWGFDENSGSTTTHVGQFVSTPGEAVTVAQ 120
           +LLS  TIVDQ VCI  WG + DE + W SS   + N+ S     GQFVSTPGEAVTVAQ
Sbjct: 61  ILLSATTIVDQRVCITHWGTFVDEFDAWGSSSMDEGNTSSAGIPFGQFVSTPGEAVTVAQ 120

Query: 121 DAVKTMIAKGYVLSKDALVKAKALDESYGLSASAAAKVAELSNRIGLTDKINASMEAIKS 180
           + VKTM++KGY+L KDA+VKAKA DES+ + A+AAAK++ELSNRIGL DKI A ME +K 
Sbjct: 121 EVVKTMLSKGYILGKDAMVKAKAFDESHQVLATAAAKMSELSNRIGLADKIFAGMETVKG 180

Query: 181 VDEKYHVSDVTKSAASFTGKTAVAAGTAVVNSRYFAKGALWVSGVLERAAKAAADLG 237
           VDEKYHVS+ TKSAA+           AVVNS YF KGALWVSGVL +AA+AAADLG
Sbjct: 181 VDEKYHVSEFTKSAAN-----------AVVNSPYFTKGALWVSGVLTQAAEAAADLG 226

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|388511771|gb|AFK43947.1| unknown [Lotus japonicus]

 Score =  291 bits (744), Expect = 2e-76,   Method: Compositional matrix adjust.
 Identities = 147/240 (61%), Positives = 182/240 (75%), Gaps = 1/240 (0%)

Query: 4   GGYVAEVVGLSPNATEKDIHEFFSHCGDPVHVEIIRSGECGGTAYVTFSNAYALETAVLL 63
           GGY  EV GLSPNATEKD+H+FFS  G   HVEIIRSG+   TAYVTF +AY+ ETA LL
Sbjct: 5   GGYTVEVTGLSPNATEKDVHDFFSFSGAIQHVEIIRSGDYACTAYVTFKDAYSQETACLL 64

Query: 64  SGATIVDQPVCIIRWGEYTDEPNPWIS-SWGFDENSGSTTTHVGQFVSTPGEAVTVAQDA 122
           SGATI+DQ VCI RWG Y D  + W   S+  +E   STT H  QFVS+ GEAVTVAQ+ 
Sbjct: 65  SGATILDQRVCITRWGNYEDAYDFWNRPSYSHEEERTSTTPHSNQFVSSAGEAVTVAQEV 124

Query: 123 VKTMIAKGYVLSKDALVKAKALDESYGLSASAAAKVAELSNRIGLTDKINASMEAIKSVD 182
           VKTM+AKGYVLSKDAL KAK  DES+ +SA+A AKV+ELS RIGL++K++A ++A+K VD
Sbjct: 125 VKTMLAKGYVLSKDALTKAKDFDESHQVSATATAKVSELSRRIGLSEKVSAGVKAVKYVD 184

Query: 183 EKYHVSDVTKSAASFTGKTAVAAGTAVVNSRYFAKGALWVSGVLERAAKAAADLGAHGAK 242
           + Y+VS  TK+AAS TG++  +A + VVN+ YF+KGALWVSG L RAA+  +DLG  G +
Sbjct: 185 QMYNVSGTTKAAASATGRSVASATSTVVNNSYFSKGALWVSGALTRAAQVTSDLGTRGGR 244

Source: Lotus japonicus

Species: Lotus japonicus

Genus: Lotus

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255552904|ref|XP_002517495.1| nucleic acid binding protein, putative [Ricinus communis] gi|223543506|gb|EEF45037.1| nucleic acid binding protein, putative [Ricinus communis]

 Score =  289 bits (740), Expect = 6e-76,   Method: Compositional matrix adjust.
 Identities = 161/248 (64%), Positives = 181/248 (72%), Gaps = 25/248 (10%)

Query: 1   MYAGGYVAEVVGLSPNATEKDIHEFFSHCGDPVHVEIIRSGECGGTAYVTFSNAYALETA 60
           MY GGY AEV  LSP AT +D+H+FF+HCG   HVEIIRSGE   TAYVTF +AYALETA
Sbjct: 1   MYPGGYTAEVTCLSPKATVEDVHDFFAHCGSTEHVEIIRSGEYACTAYVTFRDAYALETA 60

Query: 61  VLLSGATIVDQPVCIIRWGEYTDEPNPWISSWGFDENSGSTTTHVGQFVSTPGEAVTVAQ 120
           +LLSGATIVDQ VCI  WG Y D    W        N GST      + STPGEAVTVAQ
Sbjct: 61  ILLSGATIVDQQVCITHWGTYADGSYLW--------NGGST------YASTPGEAVTVAQ 106

Query: 121 DAVKTMIAKGYVLSKDALVKAKALDESYGLSASAAAKVAELSNRIGLTDKINASMEAIKS 180
           + VKTMIAKGY+L KDAL+KAK  DESY +SA+ AAKVAELSNRIGLT+KI A ME ++S
Sbjct: 107 EVVKTMIAKGYILGKDALIKAKDFDESYKVSATTAAKVAELSNRIGLTEKIQAGMETLRS 166

Query: 181 VDEKYHVSDVTKS-----------AASFTGKTAVAAGTAVVNSRYFAKGALWVSGVLERA 229
           VDEKYHVS++T S           AA++TGK AVAA  AV NS YFAKGALWVS VL RA
Sbjct: 167 VDEKYHVSNITASAILVTGTAAVVAATYTGKAAVAAANAVANSSYFAKGALWVSDVLIRA 226

Query: 230 AKAAADLG 237
           A+AAAD G
Sbjct: 227 AQAAADFG 234

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|48209876|gb|AAT40482.1| hypothetical protein [Solanum demissum]

 Score =  286 bits (733), Expect = 3e-75,   Method: Compositional matrix adjust.
 Identities = 151/241 (62%), Positives = 183/241 (75%), Gaps = 1/241 (0%)

Query: 1   MYAGGYVAEVVGLSPNATEKDIHEFFSHCGDPVHVEIIRSGECGGTAYVTFSNAYALETA 60
           M  GGY AEV GLSP ATEKD+ EFF  CG   HVEI+R+GE   TAYVTF N +ALETA
Sbjct: 1   MNPGGYTAEVTGLSPAATEKDVQEFFGFCGAIEHVEIVRAGEHASTAYVTFRNPHALETA 60

Query: 61  VLLSGATIVDQPVCIIRWGEYTDEPNPW-ISSWGFDENSGSTTTHVGQFVSTPGEAVTVA 119
           VLLSGA I+DQ VCI  WG Y DE + W  SSW   E+  S+ +    FVS+ GEAVT+ 
Sbjct: 61  VLLSGAAILDQRVCITSWGHYQDEFDYWNHSSWKPQEDCHSSDSQGHYFVSSAGEAVTLT 120

Query: 120 QDAVKTMIAKGYVLSKDALVKAKALDESYGLSASAAAKVAELSNRIGLTDKINASMEAIK 179
           QD VKTM+++GYVL K AL KAKA DES+GLSA+A +KVA+LS RIGLTDK  A +E  +
Sbjct: 121 QDVVKTMLSQGYVLGKGALGKAKAFDESHGLSATAVSKVADLSERIGLTDKFCAGVEVAR 180

Query: 180 SVDEKYHVSDVTKSAASFTGKTAVAAGTAVVNSRYFAKGALWVSGVLERAAKAAADLGAH 239
           SVD++YH+SD T+SA S TG+TA++A TAVVNS YF+KGALW+SG L +AA+AAADLG+ 
Sbjct: 181 SVDQRYHISDTTRSAVSATGRTAISAATAVVNSSYFSKGALWMSGALSKAAQAAADLGSR 240

Query: 240 G 240
           G
Sbjct: 241 G 241

Source: Solanum demissum

Species: Solanum demissum

Genus: Solanum

Family: Solanaceae

Order: Solanales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|418731492|gb|AFX67041.1| RNA recognition motif containing protein [Solanum tuberosum]

 Score =  285 bits (730), Expect = 9e-75,   Method: Compositional matrix adjust.
 Identities = 152/242 (62%), Positives = 183/242 (75%), Gaps = 2/242 (0%)

Query: 1   MYAGGYVAEVVGLSPNATEKDIHEFFSHCGDPVHVEIIRSGECGGTAYVTFSNAYALETA 60
           M  GGY AEV GLSP ATEKD+ EFF  CG   HVEI+R+GE   TAYVTF N +ALETA
Sbjct: 1   MNPGGYTAEVTGLSPTATEKDVQEFFGFCGAIEHVEIVRAGEHASTAYVTFRNPHALETA 60

Query: 61  VLLSGATIVDQPVCIIRWGEYTDEPNPWI-SSWGFDENSGSTTTHVGQ-FVSTPGEAVTV 118
           VLLSGA I+DQ VCI  WG Y DE + W  SSW   E+  S+    G  FVS+ GEAVT+
Sbjct: 61  VLLSGAAILDQRVCITSWGHYQDEFDYWNHSSWKPQEDCYSSQDSQGHYFVSSAGEAVTL 120

Query: 119 AQDAVKTMIAKGYVLSKDALVKAKALDESYGLSASAAAKVAELSNRIGLTDKINASMEAI 178
            QD VKTM+++GYVL K AL KAKA DES+GLSA+A +KVA+LS RIGLTDK  A +E  
Sbjct: 121 TQDVVKTMLSQGYVLGKGALGKAKAFDESHGLSATAVSKVADLSERIGLTDKFCAGVEVA 180

Query: 179 KSVDEKYHVSDVTKSAASFTGKTAVAAGTAVVNSRYFAKGALWVSGVLERAAKAAADLGA 238
           +SVD++YH+SD T+SA S TG+TA++A TAVVNS YF+KGALW+SG L +AA+AAADLG+
Sbjct: 181 RSVDQRYHISDTTRSAVSATGRTAISAATAVVNSSYFSKGALWMSGALSKAAQAAADLGS 240

Query: 239 HG 240
            G
Sbjct: 241 RG 242

Source: Solanum tuberosum

Species: Solanum tuberosum

Genus: Solanum

Family: Solanaceae

Order: Solanales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356500407|ref|XP_003519023.1| PREDICTED: uncharacterized protein LOC100805907 [Glycine max]

 Score =  284 bits (726), Expect = 3e-74,   Method: Compositional matrix adjust.
 Identities = 142/240 (59%), Positives = 183/240 (76%), Gaps = 1/240 (0%)

Query: 1   MYAGGYVAEVVGLSPNATEKDIHEFFSHCGDPVHVEIIRSGECGGTAYVTFSNAYALETA 60
           M +GGY  EV GLSP AT+KD+ +FF+  G   +VEIIRSG+   TAYVTF +AYA ETA
Sbjct: 1   MNSGGYAVEVTGLSPKATDKDVRDFFAFSGVIENVEIIRSGDYACTAYVTFKDAYAQETA 60

Query: 61  VLLSGATIVDQPVCIIRWGEYTDEPNPWIS-SWGFDENSGSTTTHVGQFVSTPGEAVTVA 119
            LLSGATI+DQ VCI RWG Y DE + W   S+  ++ + STT    QFVS+ GEAVT+A
Sbjct: 61  CLLSGATILDQRVCITRWGHYEDEFDFWNQPSYSHEDETASTTPQSNQFVSSAGEAVTMA 120

Query: 120 QDAVKTMIAKGYVLSKDALVKAKALDESYGLSASAAAKVAELSNRIGLTDKINASMEAIK 179
           Q+ V+TM++KGYVLSKDAL KAK  DES+ +SA+A AKV+ELS RIGL+DKI+A + A+K
Sbjct: 121 QEVVRTMLSKGYVLSKDALAKAKDFDESHQVSATATAKVSELSQRIGLSDKISAGIGAVK 180

Query: 180 SVDEKYHVSDVTKSAASFTGKTAVAAGTAVVNSRYFAKGALWVSGVLERAAKAAADLGAH 239
           SVD++Y+VS+ T +AAS  G++  AA  ++VNS YF+KGALWVSG L RAA+ A+D+G H
Sbjct: 181 SVDQRYNVSETTMAAASTAGRSVAAAANSLVNSSYFSKGALWVSGALTRAAQVASDMGTH 240

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	242
TAIR|locus:2012567	244	AT1G14340 [Arabidopsis thalian	0.917	0.909	0.513	7e-54
TAIR|locus:2102067	249	AT3G01210 [Arabidopsis thalian	0.913	0.887	0.524	3.8e-53
TAIR|locus:2129401	313	AT4G17720 [Arabidopsis thalian	0.871	0.674	0.383	1.8e-32
TAIR|locus:2145806	267	AT5G32450 [Arabidopsis thalian	0.896	0.812	0.406	2.3e-32
TAIR|locus:2172947	295	AT5G46870 [Arabidopsis thalian	0.884	0.725	0.382	4.7e-32
TAIR|locus:2200211	279	AT1G67950 [Arabidopsis thalian	0.855	0.741	0.32	3.3e-24
TAIR|locus:2148970	260	BPA1 "binding partner of acd11	0.690	0.642	0.358	1.6e-22
DICTYBASE|DDB_G0291155	311	DDB_G0291155 "RNA-binding regi	0.776	0.604	0.285	3.6e-13
POMBASE|SPAC10F6.06	257	vip1 "RNA-binding protein Vip1	0.677	0.638	0.288	4.6e-10
ASPGD|ASPL0000008076	270	AN6004 [Emericella nidulans (t	0.702	0.629	0.298	2e-09

TAIR|locus:2012567 AT1G14340 [Arabidopsis thaliana (taxid:3702)]

 Score = 557 (201.1 bits), Expect = 7.0e-54, P = 7.0e-54
 Identities = 116/226 (51%), Positives = 150/226 (66%)

Query:     5 GYVAEVVGLSPNATEKDIHEFFSHCGDPVHVEIIRSGECGGTAYVTFSNAYALETAVLLS 64
             GY  EV GLSP+ T  D+ +FFS  G    ++I+RSGE   TAYV F ++Y+ ETAVLL+
Sbjct:     6 GYGVEVTGLSPSVTHNDLIDFFSFSGTIQDIDIVRSGEQACTAYVMFKDSYSQETAVLLT 65

Query:    65 GATIVDQPVCIIRWGEYTDEPNPW-ISSWGFDENSGSTTTHVGQFVS-TPGEAVTVAQDA 122
             GATI+DQ VCI RWG++ +E + W  +S GF++ S S   H  Q      GEAVT AQ+ 
Sbjct:    66 GATILDQRVCITRWGQHHEEFDFWNATSRGFEDESDSQ--HYAQRSEFNAGEAVTKAQEV 123

Query:   123 VKTMIAKGYVLSKDALVKAKALDESYGLSASAAAKVAELSNRIGLTDKINASMEAIKSVD 182
             VK M+A G+VL KDAL KAKA DES+G+SA+A A+V++L  RIGLTDKI   +EA++  D
Sbjct:   124 VKIMLATGFVLGKDALSKAKAFDESHGVSAAAVARVSQLEQRIGLTDKIFTGLEAVRMTD 183

Query:   183 EKYHVSDVTKSAASFXXXXXXXXXXXXXNSRYFAKGALWVSGVLER 228
             ++YHVSD  KSA                NS YF+ GALW+SG LER
Sbjct:   184 QRYHVSDTAKSAVFATGRTAAAAATSVVNSSYFSSGALWLSGALER 229

GO:0000166 "nucleotide binding" evidence=IEA

GO:0003676 "nucleic acid binding" evidence=IEA;ISS

GO:0006301 "postreplication repair" evidence=RCA

TAIR|locus:2102067 AT3G01210 [Arabidopsis thaliana (taxid:3702)]

 Score = 550 (198.7 bits), Expect = 3.8e-53, P = 3.8e-53
 Identities = 127/242 (52%), Positives = 151/242 (62%)

Query:     1 MYAGGYVAEVVGLSPNATEKDIHEFFSHCGDPVHVEIIRSGECGG---TAYVTFSNAYAL 57
             MY  GYVA+V  LSP ATEKD+H FFSHCG    VE++    C G   TAYVTF +AYAL
Sbjct:     1 MYPCGYVAQVTNLSPQATEKDVHRFFSHCGI---VELVEITGCQGDALTAYVTFRDAYAL 57

Query:    58 ETAVLLSGATIVDQPVCIIRWGEYTDEPNPWISSWGFDENSGSTTTHVGQFVSTPGEAVT 117
             + AVLLSGATIVDQ V I  +G Y  E N    +   +E+   T T    F S+PGEA+T
Sbjct:    58 DMAVLLSGATIVDQTVWISVYGVYLHESN----NLRQEEDYSVTVTRSDAFASSPGEAIT 113

Query:   118 VAQDAVKTMIAKGYVLSKDALVKAKALDESYGLSASAAAKVAELSNRIGLTDKINASMEA 177
             VAQ  V+TM+AKGYVLSKDA+ KAKALDES   S+  A K+AE+S+ +GLT  I +SME 
Sbjct:   114 VAQQVVQTMLAKGYVLSKDAIGKAKALDESQRFSSLVATKLAEISHYLGLTQNIQSSMEL 173

Query:   178 IKSVDEKYHVSDVTKSA-----------ASFXXXXXXXXXXXXXNSRYFAKGALWVSGVL 226
             ++S DEKYH SD TKSA           A+              NSRYFA GALW S  L
Sbjct:   174 VRSADEKYHFSDFTKSAVLVTGTAAVAAATITGKVAAAAATSVVNSRYFANGALWFSDAL 233

Query:   227 ER 228
              R
Sbjct:   234 GR 235

GO:0003676 "nucleic acid binding" evidence=IEA;ISS

GO:0005737 "cytoplasm" evidence=ISM

TAIR|locus:2129401 AT4G17720 [Arabidopsis thaliana (taxid:3702)]

 Score = 355 (130.0 bits), Expect = 1.8e-32, P = 1.8e-32
 Identities = 86/224 (38%), Positives = 121/224 (54%)

Query:     9 EVVGLSPNATEKDIHEFFSHCGDPVHVEIIRSGECGGTAYVTFSNAYALETAVLLSGATI 68
             +V  +S  AT++D+ EFFS  GD +++E     E    AYVTF +    ETAVLLSGATI
Sbjct:     7 KVSNVSLGATDRDLKEFFSFSGDILYLETQSETERTKLAYVTFKDLQGAETAVLLSGATI 66

Query:    69 VDQPVCIIRWGEYTDEPNPWISSWGFDENSGSTTTHVGQFVSTPGEAVTVAQDAVKTMIA 128
             VD  V +    +Y   P    S    D N    +   G  V      +  A+D V +M+A
Sbjct:    67 VDSSVIVSMAPDYQLSPEALASLEPKDSNK---SPKAGDSV------LRKAEDVVSSMLA 117

Query:   129 KGYVLSKDALVKAKALDESYGLSASAAAKVAELSNRIGLTDKINASM----EAIKSVDEK 184
             KG++L KDA+ KAK++DE + L+++A+AKVA    +IG TDKIN       E ++ VD+K
Sbjct:   118 KGFILGKDAIAKAKSVDEKHQLTSTASAKVASFDKKIGFTDKINTGTVVVGEKVREVDQK 177

Query:   185 YHVSDVTKSAASFXXXXXXXXXXXXXNSRYFAKGALWVSGVLER 228
             Y VS+ TKSA +               +RY   GA WV+G   +
Sbjct:   178 YQVSEKTKSAIAAAEQTVSNAGSAIMKNRYVLTGATWVTGAFNK 221

GO:0000166 "nucleotide binding" evidence=IEA

GO:0003676 "nucleic acid binding" evidence=IEA;ISS

GO:0005634 "nucleus" evidence=ISM

GO:0005829 "cytosol" evidence=IDA

GO:0009627 "systemic acquired resistance" evidence=RCA

GO:0034976 "response to endoplasmic reticulum stress" evidence=RCA

TAIR|locus:2145806 AT5G32450 [Arabidopsis thaliana (taxid:3702)]

 Score = 354 (129.7 bits), Expect = 2.3e-32, P = 2.3e-32
 Identities = 94/231 (40%), Positives = 127/231 (54%)

Query:     9 EVVGLSPNATEKDIHEFFSHCGDPVHVEIIRSGECGGTAYVTFSNAYALETAVLLSGATI 68
             +V  +S  ATE++IHEFFS  GD  H+EI +       A+VTF++  ALE A+LLSGATI
Sbjct:     8 QVNNVSDLATEREIHEFFSFSGDIEHIEIQKEFGQSRIAFVTFTDPKALEIALLLSGATI 67

Query:    69 VDQPVCIIRWGEY-----TDEPNPWISSW--GFDENSGSTTTHVGQFVSTPGEAVTVAQD 121
             VDQ V I R   Y     T E     ++   G  E++  T T++          V+ AQD
Sbjct:    68 VDQIVTITRAENYVQRRETQEVRMLDNAMPLGLQESTTQTKTNMD---GNSRAYVSKAQD 124

Query:   122 AVKTMIAKGYVLSKDALVKAKALDESYGLSASAAAKVAELSNRIGLTDK----INASMEA 177
              V T++AKG  L +DA+ KAKA DE + L A+A+AKV+    R+GLT+K    I+A  E 
Sbjct:   125 VVATVLAKGSALGQDAVNKAKAFDEKHQLRANASAKVSSFDKRVGLTEKLSVGISAVNEK 184

Query:   178 IKSVDEKYHVSDVTKSAASFXXXXXXXXXXXXXNSRYFAKGALWVSGVLER 228
             +KSVD+K  VSD T +A                +SRY   GA W SG   +
Sbjct:   185 VKSVDQKLQVSDKTMAAIFAAERKLNDTGSAVKSSRYVTAGAAWFSGAFSK 235

GO:0000166 "nucleotide binding" evidence=IEA

GO:0003676 "nucleic acid binding" evidence=IEA;ISS

TAIR|locus:2172947 AT5G46870 [Arabidopsis thaliana (taxid:3702)]

 Score = 351 (128.6 bits), Expect = 4.7e-32, P = 4.7e-32
 Identities = 86/225 (38%), Positives = 121/225 (53%)

Query:     9 EVVGLSPNATEKDIHEFFSHCGDPVHVEIIRSGECGGTAYVTFSNAYALETAVLLSGATI 68
             +V  +S  ATE+D+ EFFS  GD  ++E     +    AYVTF +    ETAVLL+G+TI
Sbjct:     7 KVSNVSLEATERDLKEFFSFSGDIAYLETQSENDGSKLAYVTFKDLQGAETAVLLTGSTI 66

Query:    69 VDQPVCIIRWGEYTDEPNPWISSWGFDE-NSGSTTTHVGQFVSTPGEAVTVAQDAVKTMI 127
             VD  V +    +Y   P+   S     E N  S+ T   + VS        A+D V  MI
Sbjct:    67 VDSSVTVTMSPDYQLPPDALASIESLKESNKSSSPTR--EDVSV----FRKAEDVVSGMI 120

Query:   128 AKGYVLSKDALVKAKALDESYGLSASAAAKVAELSNRIGLTDKINASM----EAIKSVDE 183
             +KG+VL KDA+ KAK+LDE + L+++A+A+V     RIG T+KIN       E +K VD+
Sbjct:   121 SKGFVLGKDAIAKAKSLDEKHQLTSTASARVTSFDKRIGFTEKINTGTTVVSEKVKEVDQ 180

Query:   184 KYHVSDVTKSAASFXXXXXXXXXXXXXNSRYFAKGALWVSGVLER 228
             K+ V++ TKSA +               +RY   GA WV+G   R
Sbjct:   181 KFQVTEKTKSAIAAAEQTVSNAGSAIMKNRYVLTGATWVTGAFNR 225

GO:0000166 "nucleotide binding" evidence=IEA

GO:0003676 "nucleic acid binding" evidence=IEA;ISS

GO:0005634 "nucleus" evidence=ISM

TAIR|locus:2200211 AT1G67950 [Arabidopsis thaliana (taxid:3702)]

 Score = 277 (102.6 bits), Expect = 3.3e-24, P = 3.3e-24
 Identities = 72/225 (32%), Positives = 114/225 (50%)

Query:     3 AGGYVAEVVGLSPNATEKDIHEFFSHCGDPVHVEIIRSGECGGTAYVTFSNAYALETAVL 62
             +G    ++  +S   ++KD+ EFFS  GD  +VE+    +    AYVTF ++   ETA+L
Sbjct:    26 SGVKTVKISNVSLIVSKKDVKEFFSFSGDIQYVEMRSETQESQVAYVTFKDSQGAETAML 85

Query:    63 LSGATIVDQPVCIIRWGEYTDEPNPWISSWGFDENSGSTTTHVGQFVSTPGEAVTVAQDA 122
             L+GA I D  V I     Y   P     +   D        H     S  G +V  A+D 
Sbjct:    86 LTGAVIADLRVSITPAVNYQLPPE----ALALDSQE-----H-----SFNGFSVKKAEDV 131

Query:   123 VKTMIAKGYVLSKDALVKAKALDESYGLSASAAAKVAELSNRIGLTDKINASM----EAI 178
             V  M+ +GY L KDA+ KAKA D+ + L ++A+A +A L +++GL++K++       E +
Sbjct:   132 VNIMVGRGYALGKDAMEKAKAFDDRHNLISNASATIASLDDKMGLSEKLSIGTTVVNEKL 191

Query:   179 KSVDEKYHVSDVTKSAASFXXXXXXXXXXXXXNSRYFAKGALWVS 223
             + +DE+Y V ++TKSA +               + Y + GA W S
Sbjct:   192 RDIDERYQVREITKSALAAAEETAISARTALMANPYVSSGASWFS 236

GO:0000166 "nucleotide binding" evidence=IEA

GO:0003676 "nucleic acid binding" evidence=IEA;ISS

GO:0009507 "chloroplast" evidence=ISM

GO:0019344 "cysteine biosynthetic process" evidence=RCA

TAIR|locus:2148970 BPA1 "binding partner of acd11 1" [Arabidopsis thaliana (taxid:3702)]

 Score = 261 (96.9 bits), Expect = 1.6e-22, P = 1.6e-22
 Identities = 67/187 (35%), Positives = 96/187 (51%)

Query:    46 TAYVTFSNAYALETAVLLSGATIVDQPVCIIRWGEYTDEPNPWISSWGFDENSGSTTTHV 105
             +AYVTF      ETAVLLSGA+I DQ V I     Y+    P   +    ++SG+ +   
Sbjct:    44 SAYVTFKETQGAETAVLLSGASIADQSVIIELAPNYSPPAAPHAET----QSSGAESV-- 97

Query:   106 GQFVSTPGEAVTVAQDAVKTMIAKGYVLSKDALVKAKALDESYGLSASAAAKVAELSNRI 165
                       V  A+D V +M+AKG++L KDA+ KAKA DE +G +++A A VA L  +I
Sbjct:    98 ----------VQKAEDVVSSMLAKGFILGKDAVGKAKAFDEKHGFTSTATAGVASLDQKI 147

Query:   166 GLTDKINASM----EAIKSVDEKYHVSDVTKSAASFXXXXXXXXXXXXXNSRYFAKGALW 221
             GL+ K+ A      E IK+VD+ + V++ TKS  +               +RY   G  W
Sbjct:   148 GLSQKLTAGTSLVNEKIKAVDQNFQVTERTKSVYAAAEQTVSSAGSAVMKNRYVLTGVSW 207

Query:   222 VSGVLER 228
              +G   R
Sbjct:   208 AAGAFNR 214

GO:0000166 "nucleotide binding" evidence=IEA

GO:0003676 "nucleic acid binding" evidence=IEA;ISS

GO:0005634 "nucleus" evidence=ISM

GO:0005515 "protein binding" evidence=IPI

GO:0016192 "vesicle-mediated transport" evidence=RCA

DICTYBASE|DDB_G0291155 DDB_G0291155 "RNA-binding region RNP-1 domain-containing protein" [Dictyostelium discoideum (taxid:44689)]

 Score = 176 (67.0 bits), Expect = 3.6e-13, P = 3.6e-13
 Identities = 62/217 (28%), Positives = 108/217 (49%)

Query:     6 YVAEVVGLSPNATEKDIHEFFSHCGDPVHVEIIRSGECGGT--AYVTFSNAYALETAVLL 63
             +   V  +S  A  K + +FFS CG  V++  +R+   G +  A V F +  A +TA+LL
Sbjct:     5 FTVYVSNISLKANTKTVSDFFSFCGRIVNL-FLRNDPTGSSQQAIVVFESDSAAKTALLL 63

Query:    64 SGATIVDQPVCIIRWG---EYTDEPNPWISSWGFDENSGSTTTHVGQFVSTPGEAVTVAQ 120
             + A IVD+ + ++++    E+ D    +     F+  SG       Q+VS P E +   +
Sbjct:    64 TNALIVDKVIQVVQFTPELEF-DLTQQFSQQQQFNNLSGEQQPQQQQYVSQPQEDIVNRE 122

Query:   121 DAV------KT-----MIAKGYVLSKDALVKAKALDESYGLS------ASAA-AKVAELS 162
              +V      KT     +IA GY + +DA +KA+ +DE + +S      A A  AK  E+ 
Sbjct:   123 HSVPDNERSKTSVVASIIAAGYSVGQDAAIKARQVDEEHMISLKLKVGAEAVKAKANEID 182

Query:   163 NRIGLTDKI----NASMEAIKSVDEKYHVSDVTKSAA 195
             N + +++       A +E   ++DE++ +S   KSA+
Sbjct:   183 NNLHISESAAAIKGAVVERANALDERFQISGFFKSAS 219

GO:0045335 "phagocytic vesicle" evidence=IDA

GO:0003676 "nucleic acid binding" evidence=IEA

GO:0000166 "nucleotide binding" evidence=IEA

GO:0044351 "macropinocytosis" evidence=RCA

POMBASE|SPAC10F6.06 vip1 "RNA-binding protein Vip1" [Schizosaccharomyces pombe (taxid:4896)]

 Score = 153 (58.9 bits), Expect = 4.6e-10, P = 4.6e-10
 Identities = 56/194 (28%), Positives = 88/194 (45%)

Query:    10 VVGLSPNATEKDIHEFFSHCGDPVHVEIIRSGECGGTAYVTFSNAYALETAVLLSGATIV 69
             V  +SP  TEK I +FFS CG   ++   +SGE   TA + F    A +TA+LL  A + 
Sbjct:     7 VTNISPEVTEKQISDFFSFCGKVSNISTEKSGETQ-TAKIQFERPSATKTALLLQDALLG 65

Query:    70 DQPVCIIRWGEYTDEPNPWISSWGFDENSGSTTTHVGQFVSTPGEAVTVAQDAVKTMIAK 129
                + I      T E     S+    +  G+      +    P  A+      +  ++++
Sbjct:    66 QNKIQI------TSEDGGAAST---TDQGGAGGDQAARQEDKPRSAI------ISELLSR 110

Query:   130 GYVLSKDALVKAKALDESYGLSA-------SAAAKVAELSNRIGLTDKINASMEAIKSVD 182
             GY LS   L K+  LD+SYG+S+       SA + V  ++ R  +T+K N        VD
Sbjct:   111 GYHLSDVTLEKSIQLDQSYGVSSKFKGILESALSGVRSVNERYHVTEKAN-------EVD 163

Query:   183 EKYHVSDVTKSAAS 196
              K+ +SD     +S
Sbjct:   164 NKFAISDKLNRTSS 177

GO:0003723 "RNA binding" evidence=ISM

GO:0005829 "cytosol" evidence=IDA

GO:0033554 "cellular response to stress" evidence=IEP

ASPGD|ASPL0000008076 AN6004 [Emericella nidulans (taxid:162425)]

 Score = 150 (57.9 bits), Expect = 2.0e-09, P = 2.0e-09
 Identities = 57/191 (29%), Positives = 91/191 (47%)

Query:    10 VVGLSPNATEKDIHEFFSHCGDPVHVEII-RSGECGG--TAYVTFSNAYALETAVLLSGA 66
             V  + P+ +EK++ +FFS CG  V + +   SGE G   +A VTF    A +TA+LL   
Sbjct:     9 VSNIDPSTSEKEVQDFFSFCGKIVSISVTPTSGEPGSLKSATVTFEKDAAAKTALLLD-Q 67

Query:    67 TIVDQPVCIIRWGEYTDEPNPWISSWGFDENSGSTTTHVGQFVSTPGEAVTVAQDAVKTM 126
             T +   V  ++  +  DE    I+     E+S +      +  +   +        +   
Sbjct:    68 TQLGPSVVTVKAAQTLDE----IAG----EHSATAAEAKDENQNDLEQEDKPRSRIIAEY 119

Query:   127 IAKGYVLSKDALVKAKALDESYGLSASAAAKVAELSNRIGLTDKINASMEAIKSVDEKYH 186
             +A GY +S  A+ KA A+D+ +G + S    V  LSN     DK   + E  K +DE Y 
Sbjct:   120 LAHGYTISDQAIQKAIAIDKKHGFT-SRFTSV--LSN----FDKKTGASERAKGLDESYK 172

Query:   187 VSDVTKSAASF 197
             +SD  K+A S+
Sbjct:   173 ISD--KAANSW 181

GO:0008150 "biological_process" evidence=ND

GO:0003676 "nucleic acid binding" evidence=IEA

GO:0000166 "nucleotide binding" evidence=IEA

GO:0005829 "cytosol" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	242
PLN03121	243	PLN03121, PLN03121, nucleic acid binding protein;	1e-132
PLN03120	260	PLN03120, PLN03120, nucleic acid binding protein;	3e-69
cd12269	69	cd12269, RRM_Vip1_like, RNA recognition motif in a	9e-28
cd00590	72	cd00590, RRM_SF, RNA recognition motif (RRM) super	2e-10
cd12283	73	cd12283, RRM1_RBM39_like, RNA recognition motif 1	7e-10
smart00360	73	smart00360, RRM, RNA recognition motif	1e-09
cd12268	68	cd12268, RRM_Vip1, RNA recognition motif in fissio	6e-09
cd12254	73	cd12254, RRM_hnRNPH_ESRPs_RBM12_like, RNA recognit	3e-07
COG0724	306	COG0724, COG0724, RNA-binding proteins (RRM domain	5e-07
pfam00076	70	pfam00076, RRM_1, RNA recognition motif	5e-07
cd12391	72	cd12391, RRM1_SART3, RNA recognition motif 1 in sq	7e-07
cd12448	73	cd12448, RRM2_gar2, RNA recognition motif 2 in yea	1e-06
pfam14259	69	pfam14259, RRM_6, RNA recognition motif (a	3e-06
cd12418	75	cd12418, RRM_Aly_REF_like, RNA recognition motif i	7e-06
TIGR01622	457	TIGR01622, SF-CC1, splicing factor, CC1-like famil	7e-06
cd12412	80	cd12412, RRM_DAZL_BOULE, RNA recognition motif in	2e-05
cd12395	73	cd12395, RRM2_RBM34, RNA recognition motif 2 in RN	2e-05
cd12228	84	cd12228, RRM_ENOX, RNA recognition motif (RRM) in	2e-05
cd12260	85	cd12260, RRM2_SREK1, RNA recognition motif 2 in sp	2e-05
cd12306	73	cd12306, RRM_II_PABPs, RNA recognition motif in ty	3e-05
cd12298	78	cd12298, RRM3_Prp24, RNA recognition motif 3 in fu	1e-04
cd12502	72	cd12502, RRM2_RMB19, RNA recognition motif 2 in RN	1e-04
cd12271	72	cd12271, RRM1_PHIP1, RNA recognition motif 1 in Ar	2e-04
cd12377	78	cd12377, RRM3_Hu, RNA recognition motif 3 in the H	6e-04
cd12235	83	cd12235, RRM_PPIL4, RNA recognition motif in pepti	6e-04
cd12346	72	cd12346, RRM3_NGR1_NAM8_like, RNA recognition moti	6e-04
cd12321	77	cd12321, RRM1_TDP43, RNA recognition motif 1 in TA	9e-04
cd12259	76	cd12259, RRM_SRSF11_SREK1, RNA recognition motif i	0.002
cd12400	74	cd12400, RRM_Nop6, RNA recognition motif in Saccha	0.003
cd12397	73	cd12397, RRM2_Nop13p_fungi, RNA recognition motif	0.003
cd12237	93	cd12237, RRM_snRNP35, RNA recognition motif found	0.003
cd12344	81	cd12344, RRM1_SECp43_like, RNA recognition motif 1	0.004
cd12363	78	cd12363, RRM_TRA2, RNA recognition motif in transf	0.004
cd12296	71	cd12296, RRM1_Prp24, RNA recognition motif 1 in fu	0.004

>gnl|CDD|215589 PLN03121, PLN03121, nucleic acid binding protein; Provisional

 Score =  373 bits (960), Expect = e-132
 Identities = 171/242 (70%), Positives = 191/242 (78%)

Query: 1   MYAGGYVAEVVGLSPNATEKDIHEFFSHCGDPVHVEIIRSGECGGTAYVTFSNAYALETA 60
           MY GGY AEV  LSP ATEKD+++FFSHCG   HVEIIRSGE   TAYVTF +AYALETA
Sbjct: 1   MYPGGYTAEVTNLSPKATEKDVYDFFSHCGAIEHVEIIRSGEYACTAYVTFKDAYALETA 60

Query: 61  VLLSGATIVDQPVCIIRWGEYTDEPNPWISSWGFDENSGSTTTHVGQFVSTPGEAVTVAQ 120
           VLLSGATIVDQ VCI RWG+Y DE + W       E+  +      QF STPGEAVTVAQ
Sbjct: 61  VLLSGATIVDQRVCITRWGQYEDEFDFWNRPSWDTEDISTHNYETNQFASTPGEAVTVAQ 120

Query: 121 DAVKTMIAKGYVLSKDALVKAKALDESYGLSASAAAKVAELSNRIGLTDKINASMEAIKS 180
           + VKTM+AKGYVL KDAL KAKA DES+ +SA+AAAKVAELS RIGLTDKI A MEA++S
Sbjct: 121 EVVKTMLAKGYVLGKDALSKAKAFDESHQVSATAAAKVAELSKRIGLTDKIFAGMEAVRS 180

Query: 181 VDEKYHVSDVTKSAASFTGKTAVAAGTAVVNSRYFAKGALWVSGVLERAAKAAADLGAHG 240
           VDEKYHVS+ TKSAA+ TG+TA AA  AVVNS YF+KGALWVS  L RAAKAAADLGAHG
Sbjct: 181 VDEKYHVSEFTKSAATATGRTAAAAANAVVNSSYFSKGALWVSDALTRAAKAAADLGAHG 240

Query: 241 AK 242
           + 
Sbjct: 241 SN 242

Length = 243

>gnl|CDD|215588 PLN03120, PLN03120, nucleic acid binding protein; Provisional

 Score =  212 bits (543), Expect = 3e-69
 Identities = 97/234 (41%), Positives = 135/234 (57%), Gaps = 16/234 (6%)

Query: 9   EVVGLSPNATEKDIHEFFSHCGDPVHVEIIRSGECGGTAYVTFSNAYALETAVLLSGATI 68
           +V  +S  ATE+DI EFFS  GD  +VE+    E    AYVTF +    ETA+LLSGATI
Sbjct: 8   KVSNVSLKATERDIKEFFSFSGDIEYVEMQSENERSQIAYVTFKDPQGAETALLLSGATI 67

Query: 69  VDQPVCIIRWGEYTDEPNPWISSWGFDENSGSTTTHVGQFVSTPGEAVTVAQDAVKTMIA 128
           VDQ V I    +Y   P                        S    AV  A+D V +M+A
Sbjct: 68  VDQSVTITPAEDYQLPPEALAPL------------SSNSPASGAESAVKKAEDVVSSMLA 115

Query: 129 KGYVLSKDALVKAKALDESYGLSASAAAKVAELSNRIGLTDKINASM----EAIKSVDEK 184
           KG++L KDA+ KAKA DE + L+++A+AKVA L  +IGL++K++A      E +K VD+K
Sbjct: 116 KGFILGKDAVNKAKAFDEKHQLTSTASAKVASLDKKIGLSEKLSAGTAVVNEKVKEVDQK 175

Query: 185 YHVSDVTKSAASFTGKTAVAAGTAVVNSRYFAKGALWVSGVLERAAKAAADLGA 238
           Y VS+ TKSA +   +   +AG+A++ +RY   GA WV+G   + AKAA ++G 
Sbjct: 176 YQVSEKTKSALAAAEQKVSSAGSAIMKNRYVLTGASWVTGAFNKVAKAAEEVGQ 229

Length = 260

>gnl|CDD|240715 cd12269, RRM_Vip1_like, RNA recognition motif in a group of uncharacterized plant proteins similar to fission yeast Vip1

 Score =  100 bits (251), Expect = 9e-28
 Identities = 44/67 (65%), Positives = 50/67 (74%)

Query: 9  EVVGLSPNATEKDIHEFFSHCGDPVHVEIIRSGECGGTAYVTFSNAYALETAVLLSGATI 68
          EV  LSP ATE+DI++FFS  GD  +VEI RSGE   TAYVTF +  A ETA+LLSGATI
Sbjct: 2  EVTNLSPKATERDIYDFFSFSGDIEYVEIQRSGEQSQTAYVTFKDPQAQETALLLSGATI 61

Query: 69 VDQPVCI 75
          VDQ V I
Sbjct: 62 VDQSVTI 68

This subfamily corresponds to the Vip1-like, uncharacterized proteins found in plants. Although their biological roles remain unclear, these proteins show high sequence similarity to the fission yeast Vip1. Like Vip1 protein, members in this family contain an N-terminal RNA recognition motif (RRM), also termed RBD (RNA binding domain) or RNP (ribonucleoprotein domain). . Length = 69

>gnl|CDD|240668 cd00590, RRM_SF, RNA recognition motif (RRM) superfamily

 Score = 54.6 bits (132), Expect = 2e-10
 Identities = 22/69 (31%), Positives = 36/69 (52%), Gaps = 3/69 (4%)

Query: 10 VVGLSPNATEKDIHEFFSHCGDPVHVEIIRS--GECGGTAYVTFSNAYALETAV-LLSGA 66
          V  L P+ TE+D+ E FS  G+   V I+R   G+  G A+V F +    E A+  L+G 
Sbjct: 3  VGNLPPDTTEEDLRELFSKFGEIESVRIVRDKDGKSKGFAFVEFESPEDAEKALEALNGK 62

Query: 67 TIVDQPVCI 75
           +  + + +
Sbjct: 63 ELDGRKLKV 71

RRM, also known as RBD (RNA binding domain) or RNP (ribonucleoprotein domain), is a highly abundant domain in eukaryotes found in proteins involved in post-transcriptional gene expression processes including mRNA and rRNA processing, RNA export, and RNA stability. This domain is 90 amino acids in length and consists of a four-stranded beta-sheet packed against two alpha-helices. RRM usually interacts with ssRNA, but is also known to interact with ssDNA as well as proteins. RRM binds a variable number of nucleotides, ranging from two to eight. The active site includes three aromatic side-chains located within the conserved RNP1 and RNP2 motifs of the domain. The RRM domain is found in a variety heterogeneous nuclear ribonucleoproteins (hnRNPs), proteins implicated in regulation of alternative splicing, and protein components of small nuclear ribonucleoproteins (snRNPs). Length = 72

>gnl|CDD|240729 cd12283, RRM1_RBM39_like, RNA recognition motif 1 in vertebrate RNA-binding protein 39 (RBM39) and similar proteins

 Score = 53.8 bits (130), Expect = 7e-10
 Identities = 24/66 (36%), Positives = 36/66 (54%), Gaps = 3/66 (4%)

Query: 13 LSPNATEKDIHEFFSHCGDPVHVEIIR---SGECGGTAYVTFSNAYALETAVLLSGATIV 69
          LS    E+D++EFFS  G    V IIR   S    G AYV F +  ++  A+ L+G  ++
Sbjct: 7  LSLKVRERDLYEFFSKAGKVRDVRIIRDRNSRRSKGVAYVEFYDEESVPLALGLTGQRLL 66

Query: 70 DQPVCI 75
           QP+ +
Sbjct: 67 GQPIMV 72

This subfamily corresponds to the RRM1 of RNA-binding protein 39 (RBM39), RNA-binding protein 23 (RBM23) and similar proteins. RBM39 (also termed HCC1) is a nuclear autoantigen that contains an N-terminal arginine/serine rich (RS) motif and three RNA recognition motifs (RRMs), also termed RBDs (RNA binding domains) or RNPs (ribonucleoprotein domains). An octapeptide sequence called the RS-ERK motif is repeated six times in the RS region of RBM39. Although the cellular function of RBM23 remains unclear, it shows high sequence homology to RBM39 and contains two RRMs. It may possibly function as a pre-mRNA splicing factor. . Length = 73

>gnl|CDD|214636 smart00360, RRM, RNA recognition motif

 Score = 53.0 bits (128), Expect = 1e-09
 Identities = 20/66 (30%), Positives = 35/66 (53%), Gaps = 4/66 (6%)

Query: 12 GLSPNATEKDIHEFFSHCGDPVHVEIIR---SGECGGTAYVTFSNAYALETAV-LLSGAT 67
           L P+ TE+++ E FS  G    V ++R   +G+  G A+V F +    E A+  L+G  
Sbjct: 6  NLPPDTTEEELRELFSKFGKVESVRLVRDKETGKSKGFAFVEFESEEDAEKALEALNGKE 65

Query: 68 IVDQPV 73
          +  +P+
Sbjct: 66 LDGRPL 71

Length = 73

>gnl|CDD|240714 cd12268, RRM_Vip1, RNA recognition motif in fission yeast protein Vip1 and similar proteins

 Score = 51.0 bits (122), Expect = 6e-09
 Identities = 24/64 (37%), Positives = 36/64 (56%), Gaps = 1/64 (1%)

Query: 10 VVGLSPNATEKDIHEFFSHCGDPVHVEIIRSGECGGTAYVTFSNAYALETAVLLSGATIV 69
          V  +SP  TEK I +FFS CG   ++++   GE   TA +TF    A +TA+LL  A + 
Sbjct: 3  VSNISPKTTEKQISDFFSFCGKISNLDLTNDGE-SQTATITFEKPSAAKTALLLDNALLG 61

Query: 70 DQPV 73
           + +
Sbjct: 62 GKVI 65

This subfamily corresponds to Vip1, an RNA-binding protein encoded by gene vip1 from fission yeast Schizosaccharomyces pombe. Its biological role remains unclear. Vip1 contains an N-terminal RNA recognition motif (RRM), also termed RBD (RNA binding domain) or RNP (ribonucleoprotein domain). . Length = 68

>gnl|CDD|240700 cd12254, RRM_hnRNPH_ESRPs_RBM12_like, RNA recognition motif found in heterogeneous nuclear ribonucleoprotein (hnRNP) H protein family, epithelial splicing regulatory proteins (ESRPs), Drosophila RNA-binding protein Fusilli, RNA-binding protein 12 (RBM12) and similar proteins

 Score = 46.0 bits (110), Expect = 3e-07
 Identities = 20/72 (27%), Positives = 33/72 (45%), Gaps = 3/72 (4%)

Query: 7  VAEVVGLSPNATEKDIHEFFS-HCGDPVHVEIIRS--GECGGTAYVTFSNAYALETAVLL 63
          V  + GL  +ATE+DI +FFS     P  + I+    G   G AYV F++      A+  
Sbjct: 1  VVRLRGLPFSATEEDIRDFFSGLDIPPDGIHIVYDDDGRPTGEAYVEFASPEDARRALRK 60

Query: 64 SGATIVDQPVCI 75
              +  + + +
Sbjct: 61 HNNKMGGRYIEV 72

The family includes RRM domains in the hnRNP H protein family, G-rich sequence factor 1 (GRSF-1), ESRPs (also termed RBM35), Drosophila Fusilli, RBM12 (also termed SWAN), RBM12B, RBM19 (also termed RBD-1) and similar proteins. The hnRNP H protein family includes hnRNP H (also termed mcs94-1), hnRNP H2 (also termed FTP-3 or hnRNP H'), hnRNP F and hnRNP H3 (also termed hnRNP 2H9), which represent a group of nuclear RNA binding proteins that are involved in pre-mRNA processing. GRSF-1 is a cytoplasmic poly(A)+ mRNA binding protein which interacts with RNA in a G-rich element-dependent manner. It may function in RNA packaging, stabilization of RNA secondary structure, or other macromolecular interactions. ESRP1 (also termed RBM35A) and ESRP2 (also termed RBM35B) are epithelial-specific RNA binding proteins that promote splicing of the epithelial variant of fibroblast growth factor receptor 2 (FGFR2), ENAH (also termed hMena), CD44 and CTNND1 (also termed p120-Catenin) transcripts. Fusilli shows high sequence homology to ESRPs. It can regulate endogenous FGFR2 splicing and functions as a splicing factor. The biological roles of both, RBM12 and RBM12B, remain unclear. RBM19 is a nucleolar protein conserved in eukaryotes. It is involved in ribosome biogenesis by processing rRNA. In addition, it is essential for preimplantation development. Members in this family contain 2~6 conserved RNA recognition motifs (RRMs), also termed RBDs (RNA binding domains) or RNPs (ribonucleoprotein domains). . Length = 73

>gnl|CDD|223796 COG0724, COG0724, RNA-binding proteins (RRM domain) [General function prediction only]

 Score = 49.2 bits (116), Expect = 5e-07
 Identities = 22/82 (26%), Positives = 38/82 (46%), Gaps = 5/82 (6%)

Query: 10  VVGLSPNATEKDIHEFFSHCGDPVHVEIIRSGECG---GTAYVTFSNAYALETAV-LLSG 65
           V  L  + TE+D+ E F   G    V ++R  E G   G A+V F +  + E A+  L+G
Sbjct: 120 VGNLPYDVTEEDLRELFKKFGPVKRVRLVRDRETGKSRGFAFVEFESEESAEKAIEELNG 179

Query: 66  ATIVDQPVCIIRWGEYTDEPNP 87
             +  +P   ++  +   +P  
Sbjct: 180 KELEGRP-LRVQKAQPASQPRS 200

Length = 306

>gnl|CDD|215696 pfam00076, RRM_1, RNA recognition motif

 Score = 45.7 bits (109), Expect = 5e-07
 Identities = 19/60 (31%), Positives = 31/60 (51%), Gaps = 3/60 (5%)

Query: 12 GLSPNATEKDIHEFFSHCGDPVHVEIIR--SGECGGTAYVTFSNAYALETAV-LLSGATI 68
           L P+ TE+D+ + FS  G    + I+R  +G   G A+V F +    E A+  L+G  +
Sbjct: 5  NLPPDTTEEDLKDLFSKFGPIESIRIVRDETGRSKGFAFVEFEDEEDAEKALEALNGKEL 64

(a.k.a. RRM, RBD, or RNP domain). The RRM motif is probably diagnostic of an RNA binding protein. RRMs are found in a variety of RNA binding proteins, including various hnRNP proteins, proteins implicated in regulation of alternative splicing, and protein components of snRNPs. The motif also appears in a few single stranded DNA binding proteins. The RRM structure consists of four strands and two helices arranged in an alpha/beta sandwich, with a third helix present during RNA binding in some cases The C-terminal beta strand (4th strand) and final helix are hard to align and have been omitted in the SEED alignment The LA proteins have an N terminal rrm which is included in the seed. There is a second region towards the C terminus that has some features characteristic of a rrm but does not appear to have the important structural core of a rrm. The LA proteins are one of the main autoantigens in Systemic lupus erythematosus (SLE), an autoimmune disease. Length = 70

>gnl|CDD|240837 cd12391, RRM1_SART3, RNA recognition motif 1 in squamous cell carcinoma antigen recognized by T-cells 3 (SART3) and similar proteins

 Score = 45.3 bits (108), Expect = 7e-07
 Identities = 18/63 (28%), Positives = 34/63 (53%), Gaps = 2/63 (3%)

Query: 13 LSPNATEKDIHEFFSHCGDPVHVEIIRS--GECGGTAYVTFSNAYALETAVLLSGATIVD 70
          L  +  E ++ + FS CG+   V ++++  G+  G AYV F N  +++ A+ L    I  
Sbjct: 7  LDYSVPEDELRKLFSKCGEITDVRLVKNYKGKSKGYAYVEFENEESVQEALKLDRELIKG 66

Query: 71 QPV 73
          +P+
Sbjct: 67 RPM 69

This subfamily corresponds to the RRM1 of SART3, also termed Tat-interacting protein of 110 kDa (Tip110), an RNA-binding protein expressed in the nucleus of the majority of proliferating cells, including normal cells and malignant cells, but not in normal tissues except for the testes and fetal liver. It is involved in the regulation of mRNA splicing probably via its complex formation with RNA-binding protein with a serine-rich domain (RNPS1), a pre-mRNA-splicing factor. SART3 has also been identified as a nuclear Tat-interacting protein that regulates Tat transactivation activity through direct interaction and functions as an important cellular factor for HIV-1 gene expression and viral replication. In addition, SART3 is required for U6 snRNP targeting to Cajal bodies. It binds specifically and directly to the U6 snRNA, interacts transiently with the U6 and U4/U6 snRNPs, and promotes the reassembly of U4/U6 snRNPs after splicing in vitro. SART3 contains an N-terminal half-a-tetratricopeptide repeat (HAT)-rich domain, a nuclearlocalization signal (NLS) domain, and two C-terminal RNA recognition motifs (RRMs), also termed RBDs (RNA binding domains) or RNPs (ribonucleoprotein domains). . Length = 72

>gnl|CDD|240894 cd12448, RRM2_gar2, RNA recognition motif 2 in yeast protein gar2 and similar proteins

 Score = 45.1 bits (107), Expect = 1e-06
 Identities = 22/65 (33%), Positives = 32/65 (49%), Gaps = 4/65 (6%)

Query: 13 LSPNATEKDIHEFFSHCGDPVHVEII---RSGECGGTAYVTFSNAYALETAV-LLSGATI 68
          LS +A E  I+E F   G+   V +     SG   G  YV FS+  A + A+  L G  +
Sbjct: 6  LSFDADEDSIYEAFGEYGEISSVRLPTDPDSGRPKGFGYVEFSSQEAAQAALDALGGTDL 65

Query: 69 VDQPV 73
          + +PV
Sbjct: 66 LGRPV 70

This subfamily corresponds to the RRM2 of yeast protein gar2, a novel nucleolar protein required for 18S rRNA and 40S ribosomal subunit accumulation. It shares similar domain architecture with nucleolin from vertebrates and NSR1 from Saccharomyces cerevisiae. The highly phosphorylated N-terminal domain of gar2 is made up of highly acidic regions separated from each other by basic sequences, and contains multiple phosphorylation sites. The central domain of gar2 contains two closely adjacent N-terminal RNA recognition motifs (RRMs), also termed RBDs (RNA binding domains) or RNPs (ribonucleoprotein domains). The C-terminal RGG (or GAR) domain of gar2 is rich in glycine, arginine and phenylalanine residues. . Length = 73

>gnl|CDD|222631 pfam14259, RRM_6, RNA recognition motif (a

 Score = 43.3 bits (103), Expect = 3e-06
 Identities = 19/60 (31%), Positives = 32/60 (53%), Gaps = 1/60 (1%)

Query: 12 GLSPNATEKDIHEFFSHCGDPVHVEIIRSGECG-GTAYVTFSNAYALETAVLLSGATIVD 70
           L P+ TE+D+ EFFS  G    V ++R+ +   G A+V F++    E A+      ++D
Sbjct: 5  NLPPSVTEEDLREFFSPYGKVEGVRLVRNKDRPRGFAFVEFASPEDAEAALKKLNGLVLD 64

k.a. RRM, RBD, or RNP domain). Length = 69

>gnl|CDD|240864 cd12418, RRM_Aly_REF_like, RNA recognition motif in the Aly/REF family

 Score = 42.6 bits (101), Expect = 7e-06
 Identities = 23/69 (33%), Positives = 33/69 (47%), Gaps = 3/69 (4%)

Query: 10 VVGLSPNATEKDIHEFFSHCGDPVHVEII--RSGECGGTAYVTFSNAYALETAV-LLSGA 66
          V  L  + TE+D+ E F   G+   V+I   RSG   GTA V F      E A+   +G 
Sbjct: 5  VSNLHYDVTEEDLEELFGRVGEVKKVKINYDRSGRSEGTADVVFEKREDAERAIKQFNGV 64

Query: 67 TIVDQPVCI 75
           +  QP+ +
Sbjct: 65 LLDGQPMQV 73

This subfamily corresponds to the RRM of Aly/REF family which includes THO complex subunit 4 (THOC4, also termed Aly/REF), S6K1 Aly/REF-like target (SKAR, also termed PDIP3 or PDIP46) and similar proteins. THOC4 is an mRNA transporter protein with a well conserved RNA recognition motif (RRM), also termed RBD (RNA binding domain) or RNP (ribonucleoprotein domain). It is involved in RNA transportation from the nucleus, and was initially identified as a transcription coactivator of LEF-1 and AML-1 for the TCRalpha enhancer function. In addition, THOC4 specifically binds to rhesus (RH) promoter in erythroid, and might be a novel transcription cofactor for erythroid-specific genes. SKAR shows high sequence homology with THOC4 and possesses one RRM as well. SKAR is widely expressed and localizes to the nucleus. It may be a critical player in the function of S6K1 in cell and organism growth control by binding the activated, hyperphosphorylated form of S6K1 but not S6K2. Furthermore, SKAR functions as a protein partner of the p50 subunit of DNA polymerase delta. In addition, SKAR may have particular importance in pancreatic beta cell size determination and insulin secretion. . Length = 75

>gnl|CDD|233496 TIGR01622, SF-CC1, splicing factor, CC1-like family

 Score = 46.0 bits (109), Expect = 7e-06
 Identities = 22/69 (31%), Positives = 38/69 (55%), Gaps = 3/69 (4%)

Query: 10  VVGLSPNATEKDIHEFFSHCGDPVHVEII---RSGECGGTAYVTFSNAYALETAVLLSGA 66
           V+ L+  A E+D++EFFS  G    V+ I    S    G AYV F +  ++  A+ L+G 
Sbjct: 94  VLQLALKARERDLYEFFSKVGKVRDVQCIKDRNSRRSKGVAYVEFYDVESVIKALALTGQ 153

Query: 67  TIVDQPVCI 75
            ++ +P+ +
Sbjct: 154 MLLGRPIIV 162

This model represents a subfamily of RNA splicing factors including the Pad-1 protein (N. crassa), CAPER (M. musculus) and CC1.3 (H.sapiens). These proteins are characterized by an N-terminal arginine-rich, low complexity domain followed by three (or in the case of 4 H. sapiens paralogs, two) RNA recognition domains (rrm: pfam00706). These splicing factors are closely related to the U2AF splicing factor family (TIGR01642). A homologous gene from Plasmodium falciparum was identified in the course of the analysis of that genome at TIGR and was included in the seed. Length = 457

>gnl|CDD|240858 cd12412, RRM_DAZL_BOULE, RNA recognition motif in AZoospermia (DAZ) autosomal homologs, DAZL (DAZ-like) and BOULE

 Score = 41.9 bits (99), Expect = 2e-05
 Identities = 19/51 (37%), Positives = 28/51 (54%), Gaps = 2/51 (3%)

Query: 10 VVGLSPNATEKDIHEFFSHCGDPVHVEII--RSGECGGTAYVTFSNAYALE 58
          V G+ P+ TE+++ +FFS  G    V+II  R+G   G  +VTF      E
Sbjct: 7  VGGIPPDTTEEELRDFFSRFGSVKDVKIITDRAGVSKGYGFVTFETQEDAE 57

This subfamily corresponds to the RRM domain of two Deleted in AZoospermia (DAZ) autosomal homologs, DAZL (DAZ-like) and BOULE. BOULE is the founder member of the family and DAZL arose from BOULE in an ancestor of vertebrates. The DAZ gene subsequently originated from a duplication transposition of the DAZL gene. Invertebrates contain a single DAZ homolog, BOULE, while vertebrates, other than catarrhine primates, possess both BOULE and DAZL genes. The catarrhine primates possess BOULE, DAZL, and DAZ genes. The family members encode closely related RNA-binding proteins that are required for fertility in numerous organisms. These proteins contain an RNA recognition motif (RRM), also known as RBD (RNA binding domain) or RNP (ribonucleoprotein domain), and a varying number of copies of a DAZ motif, believed to mediate protein-protein interactions. DAZL and BOULE contain a single copy of the DAZ motif, while DAZ proteins can contain 8-24 copies of this repeat. Although their specific biochemical functions remain to be investigated, DAZL proteins may interact with poly(A)-binding proteins (PABPs), and act as translational activators of specific mRNAs during gametogenesis. . Length = 80

>gnl|CDD|240841 cd12395, RRM2_RBM34, RNA recognition motif 2 in RNA-binding protein 34 (RBM34) and similar proteins

 Score = 41.4 bits (98), Expect = 2e-05
 Identities = 16/59 (27%), Positives = 29/59 (49%), Gaps = 3/59 (5%)

Query: 18 TEKDIHEFFSHCGDPVHVEIIR---SGECGGTAYVTFSNAYALETAVLLSGATIVDQPV 73
           E+++ + F  CGD   V I+R   +G   G  YV F    ++  A+ L+G  +  + +
Sbjct: 12 EEEELRKHFEDCGDVEAVRIVRDRKTGIGKGFGYVLFKTKDSVALALKLNGIKLKGRKI 70

This subfamily corresponds to the RRM2 of RBM34, a putative RNA-binding protein containing two RNA recognition motifs (RRMs), also termed RBDs (RNA binding domains) or RNPs (ribonucleoprotein domains). Although the function of RBM34 remains unclear currently, its RRM domains may participate in mRNA processing. RBM34 may act as an mRNA processing-related protein. . Length = 73

>gnl|CDD|240674 cd12228, RRM_ENOX, RNA recognition motif (RRM) in the cell surface Ecto-NOX disulfide-thiol exchanger (ECTO-NOX or ENOX) proteins

 Score = 41.2 bits (97), Expect = 2e-05
 Identities = 24/77 (31%), Positives = 38/77 (49%), Gaps = 12/77 (15%)

Query: 10 VVGLSPNATEKDIHEFFSHCGDPVHVEIIRSGECGGTAYVTFSNAYALETAVLLSGATIV 69
          V GL  NATE+ I E F  CG+ + + + +   C    ++ F+  +A++ A+ LSG    
Sbjct: 11 VGGLPENATEEIIREVFEQCGEIIAIRMSKKNFC----HIRFAEEFAVDKAIYLSGYR-- 64

Query: 70 DQPVCIIRWGEYTDEPN 86
                +R G  TD  N
Sbjct: 65 ------VRIGSSTDPKN 75

This subgroup corresponds to the conserved RNA recognition motif (RRM) in ECTO-NOX proteins (also termed ENOX), comprising a family of plant and animal NAD(P)H oxidases exhibiting both, oxidative and protein disulfide isomerase-like, activities. They are growth-related and drive cell enlargement, and may play roles in aging and neurodegenerative diseases. ENOX proteins function as terminal oxidases of plasma membrane electron transport (PMET) through catalyzing electron transport from plasma membrane quinones to extracellular oxygen, forming water as a product. They are also hydroquinone oxidases that oxidize externally supplied NADH, hence NOX. ENOX proteins harbor a di-copper center that lack flavin. ENOX proteins display protein disulfide interchange activity that is also possessed by protein disulfide isomerase. In contrast to the classic protein disulfide isomerases, ENOX proteins lack the double CXXC motif. This family includes two ENOX proteins, ENOX1 and ENOX2. ENOX1, also termed candidate growth-related and time keeping constitutive hydroquinone [NADH] oxidase (cCNOX), or cell proliferation-inducing gene 38 protein, or Constitutive Ecto-NOX (cNOX), is the constitutively expressed cell surface NADH (ubiquinone) oxidase that is ubiquitous and refractory to drugs. ENOX2, also termed APK1 antigen, or cytosolic ovarian carcinoma antigen 1, or tumor-associated hydroquinone oxidase (tNOX), is a cancer-specific variant of ENOX1 and plays a key role in cell proliferation and tumor progression. In contrast to ENOX1, ENOX2 is drug-responsive and harbors a drug binding site to which the cancer-specific S-peptide tagged pan-ENOX2 recombinant (scFv) is directed. Moreover, ENOX2 is specifically inhibited by a variety of quinone site inhibitors that have anticancer activity and is unique to the surface of cancer cells. ENOX proteins contain many functional motifs. Length = 84

>gnl|CDD|240706 cd12260, RRM2_SREK1, RNA recognition motif 2 in splicing regulatory glutamine/lysine-rich protein 1 (SREK1) and similar proteins

 Score = 41.5 bits (98), Expect = 2e-05
 Identities = 19/71 (26%), Positives = 32/71 (45%), Gaps = 7/71 (9%)

Query: 10 VVGLSPNATEKDIHEFFSHCGDPVHVEIIRSGECGGT----AYVTFSNAYALETAVLLSG 65
          V  L P  T   + EFFS  G+   V+ +R           A+V F+   ++  A+ L+G
Sbjct: 9  VGNLDPTTTADQLLEFFSQAGE---VKYVRMAGDETQPTRYAFVEFAEQTSVINALKLNG 65

Query: 66 ATIVDQPVCII 76
          A    +P+ + 
Sbjct: 66 AMFGGRPLKVN 76

This subfamily corresponds to the RRM2 of SREK1, also termed serine/arginine-rich-splicing regulatory protein 86-kDa (SRrp86), or splicing factor arginine/serine-rich 12 (SFRS12), or splicing regulatory protein 508 amino acid (SRrp508). SREK1 belongs to a family of proteins containing regions rich in serine-arginine dipeptides (SR proteins family), which is involved in bridge-complex formation and splicing by mediating protein-protein interactions across either introns or exons. It is a unique SR family member and it may play a crucial role in determining tissue specific patterns of alternative splicing. SREK1 can alter splice site selection by both positively and negatively modulating the activity of other SR proteins. For instance, SREK1 can activate SRp20 and repress SC35 in a dose-dependent manner both in vitro and in vivo. In addition, SREK1 contains two (some contain only one) RNA recognition motifs (RRMs), also termed RBDs (RNA binding domains) or RNPs (ribonucleoprotein domains), and two serine-arginine (SR)-rich domains (SR domains) separated by an unusual glutamic acid-lysine (EK) rich region. The RRM and SR domains are highly conserved among other members of the SR superfamily. However, the EK domain is unique to SREK1. It plays a modulatory role controlling SR domain function by involvement in the inhibition of both constitutive and alternative splicing and in the selection of splice-site. . Length = 85

>gnl|CDD|240752 cd12306, RRM_II_PABPs, RNA recognition motif in type II polyadenylate-binding proteins

 Score = 40.7 bits (96), Expect = 3e-05
 Identities = 17/63 (26%), Positives = 31/63 (49%), Gaps = 6/63 (9%)

Query: 6  YVAEVVGLSPNATEKDIHEFFSHCGDPVHVEIIR---SGECGGTAYVTFSNAYALETAVL 62
          +V  V       T +++ E F  CG    + I+    +G+  G AY+ F +  ++E A+L
Sbjct: 3  FVGNV---DYGTTPEELQEHFKSCGTINRITILCDKFTGQPKGFAYIEFLDKSSVENALL 59

Query: 63 LSG 65
          L+ 
Sbjct: 60 LNE 62

This subfamily corresponds to the RRM of type II polyadenylate-binding proteins (PABPs), including polyadenylate-binding protein 2 (PABP-2 or PABPN1), embryonic polyadenylate-binding protein 2 (ePABP-2 or PABPN1L) and similar proteins. PABPs are highly conserved proteins that bind to the poly(A) tail present at the 3' ends of most eukaryotic mRNAs. They have been implicated in the regulation of poly(A) tail length during the polyadenylation reaction, translation initiation, mRNA stabilization by influencing the rate of deadenylation and inhibition of mRNA decapping. ePABP-2 is predominantly located in the cytoplasm and PABP-2 is located in the nucleus. In contrast to the type I PABPs containing four copies of RNA recognition motifs (RRMs), also termed RBDs (RNA binding domains) or RNPs (ribonucleoprotein domains), the type II PABPs contains a single highly-conserved RRM. This subfamily also includes Saccharomyces cerevisiae RBP29 (SGN1, YIR001C) gene encoding cytoplasmic mRNA-binding protein Rbp29 that binds preferentially to poly(A). Although not essential for cell viability, Rbp29 plays a role in modulating the expression of cytoplasmic mRNA. Like other type II PABPs, Rbp29 contains one RRM only. . Length = 73

>gnl|CDD|240744 cd12298, RRM3_Prp24, RNA recognition motif 3 in fungal pre-messenger RNA splicing protein 24 (Prp24) and similar proteins

 Score = 39.5 bits (93), Expect = 1e-04
 Identities = 18/70 (25%), Positives = 30/70 (42%), Gaps = 6/70 (8%)

Query: 10 VVGLSPNATEKDIHEFFSHCGD------PVHVEIIRSGECGGTAYVTFSNAYALETAVLL 63
          V  L     E D+   FS  G+      P   +  +     G A+VTF +A + E A+ L
Sbjct: 5  VRNLDFKLDEDDLRGIFSKFGEVESIRIPKKQDEKQGRLNNGFAFVTFKDASSAENALQL 64

Query: 64 SGATIVDQPV 73
          +G  +  + +
Sbjct: 65 NGTELGGRKI 74

This subfamily corresponds to the RRM3 of Prp24, also termed U4/U6 snRNA-associated-splicing factor PRP24 (U4/U6 snRNP), an RNA-binding protein with four well conserved RNA recognition motifs (RRMs), also termed RBDs (RNA binding domains) or RNPs (ribonucleoprotein domains). It facilitates U6 RNA base-pairing with U4 RNA during spliceosome assembly. Prp24 specifically binds free U6 RNA primarily with RRMs 1 and 2 and facilitates pairing of U6 RNA bases with U4 RNA bases. Additionally, it may also be involved in dissociation of the U4/U6 complex during spliceosome activation. . Length = 78

>gnl|CDD|240946 cd12502, RRM2_RMB19, RNA recognition motif 2 in RNA-binding protein 19 (RBM19) and similar proteins

 Score = 39.3 bits (92), Expect = 1e-04
 Identities = 18/60 (30%), Positives = 25/60 (41%), Gaps = 9/60 (15%)

Query: 6  YVAEVVGLSPNATEKDIHEFFSHCGDPVHVEIIR-----SGECGGTAYVTFSNAYALETA 60
          +  ++ G   N  EK I EFFS    P+    IR      G   G A+V   +   L+ A
Sbjct: 1  FTVKMRGAPFNVKEKHIREFFS----PLKPVAIRIVKNDHGRKTGFAFVDLKSEEDLKKA 56

This subfamily corresponds to the RRM2 of RBM19, also termed RNA-binding domain-1 (RBD-1), a nucleolar protein conserved in eukaryotes. It is involved in ribosome biogenesis by processing rRNA and is also essential for preimplantation development. RBM19 has a unique domain organization containing 6 conserved RNA recognition motifs (RRMs), also termed RBDs (RNA binding domains) or RNPs (ribonucleoprotein domains). . Length = 72

>gnl|CDD|240717 cd12271, RRM1_PHIP1, RNA recognition motif 1 in Arabidopsis thaliana phragmoplastin interacting protein 1 (PHIP1) and similar proteins

 Score = 38.5 bits (90), Expect = 2e-04
 Identities = 18/62 (29%), Positives = 34/62 (54%), Gaps = 3/62 (4%)

Query: 10 VVGLSPNATEKDIHEFFSHCGDPVHVEIIR---SGECGGTAYVTFSNAYALETAVLLSGA 66
          V G+   +TE +I  +FS+CG+   ++++    +G   G A++TF    A + A+ L G 
Sbjct: 3  VGGIPYYSTEDEIRSYFSYCGEIEELDLMTFPDTGRFRGIAFITFKTEEAAKRALALDGE 62

Query: 67 TI 68
           +
Sbjct: 63 DM 64

This subfamily corresponds to the RRM1 of PHIP1. A. thaliana PHIP1 and its homologs represent a novel class of plant-specific RNA-binding proteins that may play a unique role in the polarized mRNA transport to the vicinity of the cell plate. The family members consist of multiple functional domains, including a lysine-rich domain (KRD domain) that contains three nuclear localization motifs (KKKR/NK), two RNA recognition motifs (RRMs), and three CCHC-type zinc fingers. PHIP1 is a peripheral membrane protein and is localized at the cell plate during cytokinesis in plants. In addition to phragmoplastin, PHIP1 interacts with two Arabidopsis small GTP-binding proteins, Rop1 and Ran2. However, PHIP1 interacted only with the GTP-bound form of Rop1 but not the GDP-bound form. It also binds specifically to Ran2 mRNA. . Length = 72

>gnl|CDD|240823 cd12377, RRM3_Hu, RNA recognition motif 3 in the Hu proteins family

 Score = 37.3 bits (87), Expect = 6e-04
 Identities = 17/52 (32%), Positives = 28/52 (53%), Gaps = 3/52 (5%)

Query: 5  GYVAEVVGLSPNATEKDIHEFFSHCGDPVHVEIIR---SGECGGTAYVTFSN 53
          G+   V  L P+A E  + + FS  G   +V++IR   + +C G  +VT +N
Sbjct: 1  GWCIFVYNLPPDADESLLWQLFSPFGAVTNVKVIRDLTTNKCKGYGFVTMTN 52

This subfamily corresponds to the RRM3 of the Hu proteins family which represent a group of RNA-binding proteins involved in diverse biological processes. Since the Hu proteins share high homology with the Drosophila embryonic lethal abnormal vision (ELAV) protein, the Hu family is sometimes referred to as the ELAV family. Drosophila ELAV is exclusively expressed in neurons and is required for the correct differentiation and survival of neurons in flies. The neuronal members of the Hu family include Hu-antigen B (HuB or ELAV-2 or Hel-N1), Hu-antigen C (HuC or ELAV-3 or PLE21), and Hu-antigen D (HuD or ELAV-4), which play important roles in neuronal differentiation, plasticity and memory. HuB is also expressed in gonads. Hu-antigen R (HuR or ELAV-1 or HuA) is the ubiquitously expressed Hu family member. It has a variety of biological functions mostly related to the regulation of cellular response to DNA damage and other types of stress. Hu proteins perform their cytoplasmic and nuclear molecular functions by coordinately regulating functionally related mRNAs. In the cytoplasm, Hu proteins recognize and bind to AU-rich RNA elements (AREs) in the 3' untranslated regions (UTRs) of certain target mRNAs, such as GAP-43, vascular epithelial growth factor (VEGF), the glucose transporter GLUT1, eotaxin and c-fos, and stabilize those ARE-containing mRNAs. They also bind and regulate the translation of some target mRNAs, such as neurofilament M, GLUT1, and p27. In the nucleus, Hu proteins function as regulators of polyadenylation and alternative splicing. Each Hu protein contains three RNA recognition motifs (RRMs), also termed RBDs (RNA binding domains) or RNPs (ribonucleoprotein domains). RRM1 and RRM2 may cooperate in binding to an ARE. RRM3 may help to maintain the stability of the RNA-protein complex, and might also bind to poly(A) tails or be involved in protein-protein interactions. . Length = 78

>gnl|CDD|240681 cd12235, RRM_PPIL4, RNA recognition motif in peptidyl-prolyl cis-trans isomerase-like 4 (PPIase) and similar proteins

 Score = 37.2 bits (87), Expect = 6e-04
 Identities = 16/54 (29%), Positives = 25/54 (46%), Gaps = 3/54 (5%)

Query: 10 VVGLSPNATEKDIHEFFSHCGDPVHVEIIR---SGECGGTAYVTFSNAYALETA 60
          V  L+P  T++D+   FS  G     E+IR   +G+    A++ F      E A
Sbjct: 8  VCKLNPVTTDEDLEIIFSRFGKIKSCEVIRDKKTGDSLQYAFIEFETKEDCEEA 61

This subfamily corresponds to the RRM of PPIase, also termed cyclophilin-like protein PPIL4, or rotamase PPIL4, a novel nuclear RNA-binding protein encoded by cyclophilin-like PPIL4 gene. The precise role of PPIase remains unclear. PPIase contains a conserved N-terminal peptidyl-prolyl cistrans isomerase (PPIase) motif, a central RNA recognition motif (RRM), also termed RBD (RNA binding domain) or RNP (ribonucleoprotein domain), followed by a lysine rich domain, and a pair of bipartite nuclear targeting sequences (NLS) at the C-terminus. Length = 83

>gnl|CDD|240792 cd12346, RRM3_NGR1_NAM8_like, RNA recognition motif 3 in yeast negative growth regulatory protein NGR1 (RBP1), yeast protein NAM8 and similar proteins

 Score = 36.9 bits (86), Expect = 6e-04
 Identities = 23/71 (32%), Positives = 33/71 (46%), Gaps = 5/71 (7%)

Query: 10 VVGLSPNATEKDIHEFFSHCGDPVHVEIIRSGECGGTAYVTFSNAYALETAV-LLSGATI 68
          V GL P  TE ++   F   G+ V+V+I     CG   +V F +  A E A+  L G  I
Sbjct: 6  VGGLDPAVTEDELRSLFGPFGEIVYVKIPPGKGCG---FVQFVHRAAAEAAIQQLQGTII 62

Query: 69 VDQPVCIIRWG 79
              +  + WG
Sbjct: 63 GGSRI-RLSWG 72

This subfamily corresponds to the RRM3 of NGR1 and NAM8. NGR1, also termed RNA-binding protein RBP1, is a putative glucose-repressible protein that binds both RNA and single-stranded DNA (ssDNA) in yeast. It may function in regulating cell growth in early log phase, possibly through its participation in RNA metabolism. NGR1 contains two RNA recognition motifs (RRMs), also termed RBDs (RNA binding domains) or RNPs (ribonucleoprotein domains), followed by a glutamine-rich stretch that may be involved in transcriptional activity. In addition, NGR1 has an asparagine-rich region near the carboxyl terminus which also harbors a methionine-rich region. The family also includes protein NAM8, which is a putative RNA-binding protein that acts as a suppressor of mitochondrial splicing deficiencies when overexpressed in yeast. It may be a non-essential component of the mitochondrial splicing machinery. Like NGR1, NAM8 contains two RRMs. . Length = 72

>gnl|CDD|240767 cd12321, RRM1_TDP43, RNA recognition motif 1 in TAR DNA-binding protein 43 (TDP-43) and similar proteins

 Score = 37.0 bits (86), Expect = 9e-04
 Identities = 20/72 (27%), Positives = 39/72 (54%), Gaps = 7/72 (9%)

Query: 10 VVGLSPNATEKDIHEFFSHCGDPVHVEIIR---SGECGGTAYVTFSNAYALETAVL-LSG 65
          V+GL    TE+D+ ++FS  G+ + V++ +   +G+  G  +V F++    E  V  LS 
Sbjct: 4  VLGLPWKTTEQDLKDYFSTFGELLMVQVKKDPKTGQSKGFGFVRFADY---EDQVKVLSQ 60

Query: 66 ATIVDQPVCIIR 77
            ++D   C ++
Sbjct: 61 RHMIDGRWCDVK 72

This subfamily corresponds to the RRM1 of TDP-43 (also termed TARDBP), a ubiquitously expressed pathogenic protein whose normal function and abnormal aggregation are directly linked to the genetic disease cystic fibrosis, and two neurodegenerative disorders: frontotemporal lobar degeneration (FTLD) and amyotrophic lateral sclerosis (ALS). TDP-43 binds both DNA and RNA, and has been implicated in transcriptional repression, pre-mRNA splicing and translational regulation. TDP-43 is a dimeric protein with two RNA recognition motifs (RRMs), also termed RBDs (RNA binding domains) or RNPs (ribonucleoprotein domains), and a C-terminal glycine-rich domain. The RRMs are responsible for DNA and RNA binding; they bind to TAR DNA and RNA sequences with UG-repeats. The glycine-rich domain can interact with the hnRNP family proteins to form the hnRNP-rich complex involved in splicing inhibition. It is also essential for the cystic fibrosis transmembrane conductance regulator (CFTR) exon 9-skipping activity. . Length = 77

>gnl|CDD|240705 cd12259, RRM_SRSF11_SREK1, RNA recognition motif in serine/arginine-rich splicing factor 11 (SRSF11), splicing regulatory glutamine/lysine-rich protein 1 (SREK1) and similar proteins

 Score = 35.7 bits (83), Expect = 0.002
 Identities = 14/76 (18%), Positives = 32/76 (42%), Gaps = 5/76 (6%)

Query: 7  VAEVVGLSPNATEKDIHEFFSHCGDPVHVEIIRSGECGG-----TAYVTFSNAYALETAV 61
          V +V  +SP ATE+ +   F   G    + +  S +          +V + +   +  A+
Sbjct: 1  VVQVTNVSPQATEEQMRTLFGFLGKIEELRLYPSDDDLAPVLSKVCFVKYEDPEDVGVAL 60

Query: 62 LLSGATIVDQPVCIIR 77
           L+    +D+ + ++ 
Sbjct: 61 HLTNTVFIDRALIVVP 76

This subfamily corresponds to the RRM domain of SRSF11 (SRp54 or p54), SREK1 ( SFRS12 or SRrp86) and similar proteins, a group of proteins containing regions rich in serine-arginine dipeptides (SR protein family). These are involved in bridge-complex formation and splicing by mediating protein-protein interactions across either introns or exons. SR proteins have been identified as crucial regulators of alternative splicing. Different SR proteins display different substrate specificity, have distinct functions in alternative splicing of different pre-mRNAs, and can even negatively regulate splicing. All SR family members are characterized by the presence of one or two N-terminal RNA recognition motifs (RRMs), also termed RBDs (RNA binding domains) or RNPs (ribonucleoprotein domains), and the C-terminal regions rich in serine and arginine dipeptides (SR domains). The RRM domain is responsible for RNA binding and specificity in both alternative and constitutive splicing. In contrast, SR domains are thought to be protein-protein interaction domains that are often interchangeable. . Length = 76

>gnl|CDD|240846 cd12400, RRM_Nop6, RNA recognition motif in Saccharomyces cerevisiae nucleolar protein 6 (Nop6) and similar proteins

 Score = 35.4 bits (82), Expect = 0.003
 Identities = 18/57 (31%), Positives = 30/57 (52%), Gaps = 4/57 (7%)

Query: 11 VG-LSPNATEKDIHEFFSHCGDPVHVEII---RSGECGGTAYVTFSNAYALETAVLL 63
          VG L  + T +D+   F + G P  V ++   ++G+  G A+V F  A A+  A+ L
Sbjct: 5  VGNLPYDTTAEDLLAHFKNAGAPPSVRLLTDKKTGKSKGCAFVEFDTAEAMTKALKL 61

This subfamily corresponds to the RRM of Nop6, also known as Ydl213c, a component of 90S pre-ribosomal particles in yeast S. cerevisiae. It is enriched in the nucleolus and is required for 40S ribosomal subunit biogenesis. Nop6 is a non-essential putative RNA-binding protein with two N-terminal putative nuclear localisation sequences (NLS-1 and NLS-2) and an RNA recognition motif (RRM), also termed RBD (RNA binding domain) or RNP (ribonucleoprotein domain). It binds to the pre-rRNA early during transcription and plays an essential role in pre-rRNA processing. . Length = 74

>gnl|CDD|240843 cd12397, RRM2_Nop13p_fungi, RNA recognition motif 2 in yeast nucleolar protein 13 (Nop13p) and similar proteins

 Score = 35.1 bits (81), Expect = 0.003
 Identities = 17/55 (30%), Positives = 24/55 (43%), Gaps = 4/55 (7%)

Query: 11 VG-LSPNATEKDIHEFFSHCGDPVHVEIIR---SGECGGTAYVTFSNAYALETAV 61
          VG LS   TE ++   F   G    V ++    SG+C G A+V F        A+
Sbjct: 3  VGNLSFETTEDELRAHFGRVGRIRRVRMMTFEDSGKCKGFAFVDFEEIEFATNAL 57

This subfamily corresponds to the RRM2 of Nop13p encoded by YNL175c from Saccharomyces cerevisiae. It shares high sequence similarity with nucleolar protein 12 (Nop12p). Both Nop12p and Nop13p are not essential for growth. However, unlike Nop12p that is localized to the nucleolus, Nop13p localizes primarily to the nucleolus but is also present in the nucleoplasm to a lesser extent. Nop13p contains two RNA recognition motifs (RRMs), also termed RBDs (RNA binding domains) or RNPs (ribonucleoprotein domains). . Length = 73

>gnl|CDD|240683 cd12237, RRM_snRNP35, RNA recognition motif found in U11/U12 small nuclear ribonucleoprotein 35 kDa protein (U11/U12-35K) and similar proteins

 Score = 35.7 bits (83), Expect = 0.003
 Identities = 16/62 (25%), Positives = 28/62 (45%), Gaps = 3/62 (4%)

Query: 13 LSPNATEKDIHEFFSHCGDPVHVEIIR---SGECGGTAYVTFSNAYALETAVLLSGATIV 69
          LS   TE+ + E FS  GD   + ++R   +G   G A+V + +      A   +   ++
Sbjct: 11 LSLQTTEETLREVFSRYGDIRRLRLVRDIVTGFSKGYAFVEYEHERDALRAYRDAHKLVI 70

Query: 70 DQ 71
          D 
Sbjct: 71 DG 72

This subfamily corresponds to the RRM of U11/U12-35K, also termed protein HM-1, or U1 snRNP-binding protein homolog, and is one of the components of the U11/U12 snRNP, which is a subunit of the minor (U12-dependent) spliceosome required for splicing U12-type nuclear pre-mRNA introns. U11/U12-35K is highly conserved among bilateria and plants, but lacks in some organisms, such as Saccharomyces cerevisiae and Caenorhabditis elegans. Moreover, U11/U12-35K shows significant sequence homology to U1 snRNP-specific 70 kDa protein (U1-70K or snRNP70). It contains a conserved RNA recognition motif (RRM), also termed RBD (RNA binding domain) or RNP (ribonucleoprotein domain), followed by an adjacent glycine-rich region, and Arg-Asp and Arg-Glu dipeptide repeats rich domain, making U11/U12-35K a possible functional analog of U1-70K. It may facilitate 5' splice site recognition in the minor spliceosome and play a role in exon bridging, interacting with components of the major spliceosome bound to the pyrimidine tract of an upstream U2-type intron. The family corresponds to the RRM of U11/U12-35K that may directly contact the U11 or U12 snRNA through the RRM domain. Length = 93

>gnl|CDD|240790 cd12344, RRM1_SECp43_like, RNA recognition motif 1 in tRNA selenocysteine-associated protein 1 (SECp43) and similar proteins

 Score = 35.3 bits (82), Expect = 0.004
 Identities = 17/54 (31%), Positives = 27/54 (50%), Gaps = 7/54 (12%)

Query: 13 LSPNATEKDIHEFFSHCGDPVHVEIIR---SGECGGTAYVTFSN----AYALET 59
          L P   E  I+  F+ CG+   V+IIR   +G+  G  +V F+       AL++
Sbjct: 7  LEPWMDEAYIYSAFAECGEVTSVKIIRNKQTGKSAGYGFVEFATHEAAEQALQS 60

This subfamily corresponds to the RRM1 in tRNA selenocysteine-associated protein 1 (SECp43), yeast negative growth regulatory protein NGR1 (RBP1), yeast protein NAM8, and similar proteins. SECp43 is an RNA-binding protein associated specifically with eukaryotic selenocysteine tRNA [tRNA(Sec)]. It may play an adaptor role in the mechanism of selenocysteine insertion. SECp43 is located primarily in the nucleus and contains two N-terminal RNA recognition motifs (RRMs), also termed RBDs (RNA binding domains) or RNPs (ribonucleoprotein domains), and a C-terminal polar/acidic region. Yeast proteins, NGR1 and NAM8, show high sequence similarity with SECp43. NGR1 is a putative glucose-repressible protein that binds both RNA and single-stranded DNA (ssDNA). It may function in regulating cell growth in early log phase, possibly through its participation in RNA metabolism. NGR1 contains three RRMs, two of which are followed by a glutamine-rich stretch that may be involved in transcriptional activity. In addition, NGR1 has an asparagine-rich region near the C-terminus which also harbors a methionine-rich region. NAM8 is a putative RNA-binding protein that acts as a suppressor of mitochondrial splicing deficiencies when overexpressed in yeast. It may be a non-essential component of the mitochondrial splicing machinery. NAM8 also contains three RRMs. . Length = 81

>gnl|CDD|240809 cd12363, RRM_TRA2, RNA recognition motif in transformer-2 protein homolog TRA2-alpha, TRA2-beta and similar proteins

 Score = 34.9 bits (81), Expect = 0.004
 Identities = 16/47 (34%), Positives = 25/47 (53%), Gaps = 3/47 (6%)

Query: 10 VVGLSPNATEKDIHEFFSHCGDPVHVEII---RSGECGGTAYVTFSN 53
          V GLS   TE+D+ E FS  G    V+++   ++G   G  +V F +
Sbjct: 4  VFGLSLYTTERDLREVFSRYGPIEKVQVVYDQKTGRSRGFGFVYFES 50

This subfamily corresponds to the RRM of two mammalian homologs of Drosophila transformer-2 (Tra2), TRA2-alpha, TRA2-beta (also termed SFRS10), and similar proteins found in eukaryotes. TRA2-alpha is a 40-kDa serine/arginine-rich (SR) protein that specifically binds to gonadotropin-releasing hormone (GnRH) exonic splicing enhancer on exon 4 (ESE4) and is necessary for enhanced GnRH pre-mRNA splicing. It strongly stimulates GnRH intron A excision in a dose-dependent manner. In addition, TRA2-alpha can interact with either 9G8 or SRp30c, which may also be crucial for ESE-dependent GnRH pre-mRNA splicing. TRA2-beta is a serine/arginine-rich (SR) protein that controls the pre-mRNA alternative splicing of the calcitonin/calcitonin gene-related peptide (CGRP), the survival motor neuron 1 (SMN1) protein and the tau protein. Both, TRA2-alpha and TRA2-beta, contains a well conserved RNA recognition motif (RRM), also termed RBD (RNA binding domain) or RNP (ribonucleoprotein domain), flanked by the N- and C-terminal arginine/serine (RS)-rich regions. . Length = 78

>gnl|CDD|240742 cd12296, RRM1_Prp24, RNA recognition motif 1 in fungal pre-messenger RNA splicing protein 24 (Prp24) and similar proteins

 Score = 34.5 bits (80), Expect = 0.004
 Identities = 15/51 (29%), Positives = 21/51 (41%), Gaps = 1/51 (1%)

Query: 10 VVGLSPNATEKDIHEFFSHCGDPVHVEIIRSGECGGTAYVTFSNAYALETA 60
          V  L  + TE  I +FF  CG+   V+I+ S      A + F        A
Sbjct: 5  VKNLPKDTTENKIRQFFKDCGEIREVKIVESEGG-LVAVIEFETEDEALAA 54

This subfamily corresponds to the RRM1 of Prp24, also termed U4/U6 snRNA-associated-splicing factor PRP24 (U4/U6 snRNP), an RNA-binding protein with four well conserved RNA recognition motifs (RRMs), also termed RBDs (RNA binding domains) or RNPs (ribonucleoprotein domains). It facilitates U6 RNA base-pairing with U4 RNA during spliceosome assembly. Prp24 specifically binds free U6 RNA primarily with RRMs 1 and 2 and facilitates pairing of U6 RNA bases with U4 RNA bases. Additionally, it may also be involved in dissociation of the U4/U6 complex during spliceosome activation. . Length = 71

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	242
PLN03121	243	nucleic acid binding protein; Provisional	100.0
PLN03120	260	nucleic acid binding protein; Provisional	100.0
PLN03134	144	glycine-rich RNA-binding protein 4; Provisional	99.56
PF00076	70	RRM_1: RNA recognition motif. (a.k.a. RRM, RBD, or	99.55
TIGR01661	352	ELAV_HUD_SF ELAV/HuD family splicing factor. These	99.44
KOG0125	376	consensus Ataxin 2-binding protein (RRM superfamil	99.41
PF14259	70	RRM_6: RNA recognition motif (a.k.a. RRM, RBD, or	99.4
TIGR01661	352	ELAV_HUD_SF ELAV/HuD family splicing factor. These	99.4
smart00362	72	RRM_2 RNA recognition motif.	99.35
TIGR01659	346	sex-lethal sex-lethal family splicing factor. This	99.34
KOG0121	153	consensus Nuclear cap-binding protein complex, sub	99.32
KOG0107	195	consensus Alternative splicing factor SRp20/9G8 (R	99.31
KOG0105	241	consensus Alternative splicing factor ASF/SF2 (RRM	99.28
TIGR01622	457	SF-CC1 splicing factor, CC1-like family. A homolog	99.27
PLN03213	759	repressor of silencing 3; Provisional	99.24
KOG0148	321	consensus Apoptosis-promoting RNA-binding protein	99.24
TIGR01645	612	half-pint poly-U binding splicing factor, half-pin	99.22
TIGR01645	612	half-pint poly-U binding splicing factor, half-pin	99.21
cd00590	74	RRM RRM (RNA recognition motif), also known as RBD	99.21
TIGR01622	457	SF-CC1 splicing factor, CC1-like family. A homolog	99.21
TIGR01659	346	sex-lethal sex-lethal family splicing factor. This	99.19
COG0724	306	RNA-binding proteins (RRM domain) [General functio	99.19
smart00360	71	RRM RNA recognition motif.	99.18
TIGR01628	562	PABP-1234 polyadenylate binding protein, human typ	99.17
TIGR01628	562	PABP-1234 polyadenylate binding protein, human typ	99.17
KOG0114	124	consensus Predicted RNA-binding protein (RRM super	99.14
KOG0149	247	consensus Predicted RNA-binding protein SEB4 (RRM	99.14
TIGR01642	509	U2AF_lg U2 snRNP auxilliary factor, large subunit,	99.13
TIGR01649	481	hnRNP-L_PTB hnRNP-L/PTB/hephaestus splicing factor	99.13
TIGR01648	578	hnRNP-R-Q heterogeneous nuclear ribonucleoprotein	99.13
TIGR01649	481	hnRNP-L_PTB hnRNP-L/PTB/hephaestus splicing factor	99.09
TIGR01642	509	U2AF_lg U2 snRNP auxilliary factor, large subunit,	99.09
KOG0126	219	consensus Predicted RNA-binding protein (RRM super	99.07
KOG0113	335	consensus U1 small nuclear ribonucleoprotein (RRM	99.05
TIGR01648	578	hnRNP-R-Q heterogeneous nuclear ribonucleoprotein	99.03
KOG0122	270	consensus Translation initiation factor 3, subunit	99.03
PF13893	56	RRM_5: RNA recognition motif. (a.k.a. RRM, RBD, or	98.99
KOG0117	506	consensus Heterogeneous nuclear ribonucleoprotein	98.94
KOG0108	435	consensus mRNA cleavage and polyadenylation factor	98.92
KOG0415	479	consensus Predicted peptidyl prolyl cis-trans isom	98.91
KOG4207	256	consensus Predicted splicing factor, SR protein su	98.89
KOG0131	203	consensus Splicing factor 3b, subunit 4 [RNA proce	98.83
KOG0123	369	consensus Polyadenylate-binding protein (RRM super	98.82
KOG0153	377	consensus Predicted RNA-binding protein (RRM super	98.78
smart00361	70	RRM_1 RNA recognition motif.	98.78
KOG0130	170	consensus RNA-binding protein RBM8/Tsunagi (RRM su	98.76
KOG0145	360	consensus RNA-binding protein ELAV/HU (RRM superfa	98.72
KOG0127	678	consensus Nucleolar protein fibrillarin NOP77 (RRM	98.71
KOG0109	346	consensus RNA-binding protein LARK, contains RRM a	98.71
KOG0117	506	consensus Heterogeneous nuclear ribonucleoprotein	98.7
KOG4211	510	consensus Splicing factor hnRNP-F and related RNA-	98.7
KOG0111	298	consensus Cyclophilin-type peptidyl-prolyl cis-tra	98.69
KOG0127	678	consensus Nucleolar protein fibrillarin NOP77 (RRM	98.68
KOG0124	544	consensus Polypyrimidine tract-binding protein PUF	98.67
KOG0147	549	consensus Transcriptional coactivator CAPER (RRM s	98.63
KOG4206	221	consensus Spliceosomal protein snRNP-U1A/U2B [RNA	98.59
KOG0148	321	consensus Apoptosis-promoting RNA-binding protein	98.58
KOG0145	360	consensus RNA-binding protein ELAV/HU (RRM superfa	98.58
KOG4676	479	consensus Splicing factor, arginine/serine-rich [R	98.56
KOG0144	510	consensus RNA-binding protein CUGBP1/BRUNO (RRM su	98.53
KOG4212	608	consensus RNA-binding protein hnRNP-M [RNA process	98.47
KOG0109	346	consensus RNA-binding protein LARK, contains RRM a	98.44
KOG4209	231	consensus Splicing factor RNPS1, SR protein superf	98.44
KOG0116	419	consensus RasGAP SH3 binding protein rasputin, con	98.44
KOG1548	382	consensus Transcription elongation factor TAT-SF1	98.39
KOG4205	311	consensus RNA-binding protein musashi/mRNA cleavag	98.39
KOG4205	311	consensus RNA-binding protein musashi/mRNA cleavag	98.36
KOG0123	369	consensus Polyadenylate-binding protein (RRM super	98.36
KOG0110	725	consensus RNA-binding protein (RRM superfamily) [G	98.35
KOG4212	608	consensus RNA-binding protein hnRNP-M [RNA process	98.34
KOG0131	203	consensus Splicing factor 3b, subunit 4 [RNA proce	98.22
KOG0144	510	consensus RNA-binding protein CUGBP1/BRUNO (RRM su	98.22
KOG0124	544	consensus Polypyrimidine tract-binding protein PUF	98.21
KOG0146	371	consensus RNA-binding protein ETR-3 (RRM superfami	98.18
KOG0533	243	consensus RRM motif-containing protein [RNA proces	98.18
KOG0106	216	consensus Alternative splicing factor SRp55/B52/SR	98.16
KOG0132	894	consensus RNA polymerase II C-terminal domain-bind	98.16
KOG4454	267	consensus RNA binding protein (RRM superfamily) [G	98.15
KOG4661	940	consensus Hsp27-ERE-TATA-binding protein/Scaffold	98.11
KOG4208	214	consensus Nucleolar RNA-binding protein NIFK [Gene	97.98
KOG0147	549	consensus Transcriptional coactivator CAPER (RRM s	97.91
PF08777	105	RRM_3: RNA binding motif; InterPro: IPR014886 This	97.86
KOG4660	549	consensus Protein Mei2, essential for commitment t	97.85
KOG0110	725	consensus RNA-binding protein (RRM superfamily) [G	97.83
PF14605	53	Nup35_RRM_2: Nup53/35/40-type RNA recognition moti	97.79
KOG4211	510	consensus Splicing factor hnRNP-F and related RNA-	97.71
KOG1457	284	consensus RNA binding protein (contains RRM repeat	97.68
KOG0151	877	consensus Predicted splicing regulator, contains R	97.66
PF05172	100	Nup35_RRM: Nup53/35/40-type RNA recognition motif;	97.6
KOG1995	351	consensus Conserved Zn-finger protein [General fun	97.52
KOG1457	284	consensus RNA binding protein (contains RRM repeat	97.5
KOG0146	371	consensus RNA-binding protein ETR-3 (RRM superfami	97.47
PF11608	90	Limkain-b1: Limkain b1; InterPro: IPR024582 This e	97.38
KOG3152	278	consensus TBP-binding protein, activator of basal	97.07
KOG1190	492	consensus Polypyrimidine tract-binding protein [RN	97.04
PF08952	146	DUF1866: Domain of unknown function (DUF1866) ; In	97.02
KOG0106	216	consensus Alternative splicing factor SRp55/B52/SR	96.96
KOG4210	285	consensus Nuclear localization sequence binding pr	96.95
KOG4206	221	consensus Spliceosomal protein snRNP-U1A/U2B [RNA	96.88
COG5175	480	MOT2 Transcriptional repressor [Transcription]	96.88
PF04059	97	RRM_2: RNA recognition motif 2; InterPro: IPR00720	96.81
KOG4307	944	consensus RNA binding protein RBM12/SWAN [General	96.59
KOG0120	500	consensus Splicing factor U2AF, large subunit (RRM	96.45
KOG0226	290	consensus RNA-binding proteins [General function p	96.18
KOG0129	520	consensus Predicted RNA-binding protein (RRM super	96.11
PLN03120	260	nucleic acid binding protein; Provisional	95.96
KOG1855	484	consensus Predicted RNA-binding protein [General f	95.93
KOG1548	382	consensus Transcription elongation factor TAT-SF1	95.65
KOG1190	492	consensus Polypyrimidine tract-binding protein [RN	95.52
KOG0129	520	consensus Predicted RNA-binding protein (RRM super	95.43
KOG1365	508	consensus RNA-binding protein Fusilli, contains RR	95.41
KOG0128	881	consensus RNA-binding protein SART3 (RRM superfami	95.28
KOG0120	500	consensus Splicing factor U2AF, large subunit (RRM	94.7
KOG1996	378	consensus mRNA splicing factor [RNA processing and	94.48
KOG4285	350	consensus Mitotic phosphoprotein [Cell cycle contr	94.32
KOG4307	944	consensus RNA binding protein RBM12/SWAN [General	94.09
KOG1365	508	consensus RNA-binding protein Fusilli, contains RR	94.02
KOG0112	975	consensus Large RNA-binding protein (RRM superfami	93.65
KOG1456	494	consensus Heterogeneous nuclear ribonucleoprotein	93.59
PF10309	62	DUF2414: Protein of unknown function (DUF2414); In	93.3
KOG0105	241	consensus Alternative splicing factor ASF/SF2 (RRM	93.07
KOG2314	698	consensus Translation initiation factor 3, subunit	92.88
PF08675	87	RNA_bind: RNA binding domain; InterPro: IPR014789	92.77
KOG4849	498	consensus mRNA cleavage factor I subunit/CPSF subu	92.68
PF03467	176	Smg4_UPF3: Smg-4/UPF3 family; InterPro: IPR005120	92.55
KOG0115	275	consensus RNA-binding protein p54nrb (RRM superfam	91.68
KOG2202	260	consensus U2 snRNP splicing factor, small subunit,	91.45
KOG0128	881	consensus RNA-binding protein SART3 (RRM superfami	91.31
PF07576	110	BRAP2: BRCA1-associated protein 2; InterPro: IPR01	91.08
PF15023	166	DUF4523: Protein of unknown function (DUF4523)	90.56
KOG1456	494	consensus Heterogeneous nuclear ribonucleoprotein	89.27
PF04847	184	Calcipressin: Calcipressin; InterPro: IPR006931 Ca	88.55
KOG0112	975	consensus Large RNA-binding protein (RRM superfami	88.32
PLN03121	243	nucleic acid binding protein; Provisional	88.1
KOG2253	668	consensus U1 snRNP complex, subunit SNU71 and rela	87.82
KOG2068	327	consensus MOT2 transcription factor [Transcription	87.22
KOG0804	493	consensus Cytoplasmic Zn-finger protein BRAP2 (BRC	86.23
KOG2135	526	consensus Proteins containing the RNA recognition	85.08
PF15513	62	DUF4651: Domain of unknown function (DUF4651)	84.24
KOG2591	684	consensus c-Mpl binding protein, contains La domai	82.64
KOG2193	584	consensus IGF-II mRNA-binding protein IMP, contain	82.63

>PLN03121 nucleic acid binding protein; Provisional

Probab=100.00  E-value=1.1e-82  Score=559.75  Aligned_cols=241  Identities=71%  Similarity=1.020  Sum_probs=227.4

Q ss_pred             CCCCCcEEEEeCCCCCCCHHHHHHHhccCCCceEEEEeecCCcCceEEEEecCHHHHHHHHhcCCCeecCeeEEEEecCC
Q 026156            1 MYAGGYVAEVVGLSPNATEKDIHEFFSHCGDPVHVEIIRSGECGGTAYVTFSNAYALETAVLLSGATIVDQPVCIIRWGE   80 (242)
Q Consensus         1 M~~~~~tV~VsNLs~~~TE~dLrefFs~~G~I~~V~l~~~~~~~~~AfV~F~~~~aA~tAl~Lng~~l~g~~I~V~~a~~   80 (242)
                      |+++++||||+||++.+||++|++||++||+|.+|+|++++++.++|||+|++++++++|++|||.+|.|++|.|++|++
T Consensus         1 m~~~g~TV~V~NLS~~tTE~dLrefFS~~G~I~~V~I~~D~et~gfAfVtF~d~~aaetAllLnGa~l~d~~I~It~~~~   80 (243)
T PLN03121          1 MYPGGYTAEVTNLSPKATEKDVYDFFSHCGAIEHVEIIRSGEYACTAYVTFKDAYALETAVLLSGATIVDQRVCITRWGQ   80 (243)
T ss_pred             CCCCceEEEEecCCCCCCHHHHHHHHHhcCCeEEEEEecCCCcceEEEEEECCHHHHHHHHhcCCCeeCCceEEEEeCcc
Confidence            89999999999999999999999999999999999999998888999999999999999999999999999999999999


Q ss_pred             CCCCCCCCCC-CCCCCCCCCCCccccCccccCcchhhhhHHHHHHHHhhccceecHHHHHHHHHhhhhcCCcHHHHHHHH
Q 026156           81 YTDEPNPWIS-SWGFDENSGSTTTHVGQFVSTPGEAVTVAQDAVKTMIAKGYVLSKDALVKAKALDESYGLSASAAAKVA  159 (242)
Q Consensus        81 ~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~p~~a~~~a~~iva~~LA~Gyvl~~~ai~kA~~~Dekh~~ss~~~~~v~  159 (242)
                      |.+++++|+. ++..++ ..+...+.+.+..+|++++++||+||++||||||+||+|+++|||+|||+||||++++++|.
T Consensus        81 y~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~p~~a~~~aq~Vv~tmLAkGyvLgkda~~KAkafDE~h~lss~a~a~v~  159 (243)
T PLN03121         81 YEDEFDFWNRPSWDTED-ISTHNYETNQFASTPGEAVTVAQEVVKTMLAKGYVLGKDALSKAKAFDESHQVSATAAAKVA  159 (243)
T ss_pred             cccCcccccCccccccc-cccccccccccCCCchhhHHHHHHHHHHHHHhcchhhHHHHHHHHHHHHhcCccHhhhhhhh
Confidence            9999998876 223333 33444555667789999999999999999999999999999999999999999999999999


Q ss_pred             hhhhccccchhhhhHHHHHHHhhhhhchhHHhhHhhhhhhhhhhhcccccccchhhhhhhhhHhhHHHHHHHHHHhhccc
Q 026156          160 ELSNRIGLTDKINASMEAIKSVDEKYHVSDVTKSAASFTGKTAVAAGTAVVNSRYFAKGALWVSGVLERAAKAAADLGAH  239 (242)
Q Consensus       160 ~~d~k~g~t~k~~~g~~~~~~vD~k~~vs~~t~sa~~~~~~~~~~~~~~~~~~~y~~~ga~w~~~a~~~~a~~~~~~~~~  239 (242)
                      +||+||||||||++|+++||+|||||||||+||+|+.+|||++++||++||+||||++||+||||||+||||||.|+|++
T Consensus       160 ~~d~~iglt~k~~~g~~~vk~vDeky~vs~~tksA~~aa~~~~~~a~sai~~~~Y~~~Ga~w~sga~~~~akaa~~~g~~  239 (243)
T PLN03121        160 ELSKRIGLTDKIFAGMEAVRSVDEKYHVSEFTKSAATATGRTAAAAANAVVNSSYFSKGALWVSDALTRAAKAAADLGAH  239 (243)
T ss_pred             hhhhhccchhhhhhhHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHhhhhhhhcchhhcchHHHHHHHHHHHHHHHHhhcc
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCC
Q 026156          240 GAK  242 (242)
Q Consensus       240 ~~~  242 (242)
                      |++
T Consensus       240 ~~~  242 (243)
T PLN03121        240 GSN  242 (243)
T ss_pred             ccC
Confidence            974

>PLN03120 nucleic acid binding protein; Provisional

Probab=100.00  E-value=5.5e-75  Score=517.10  Aligned_cols=225  Identities=43%  Similarity=0.604  Sum_probs=209.1

Q ss_pred             CcEEEEeCCCCCCCHHHHHHHhccCCCceEEEEeecCCcCceEEEEecCHHHHHHHHhcCCCeecCeeEEEEecCCCCCC
Q 026156            5 GYVAEVVGLSPNATEKDIHEFFSHCGDPVHVEIIRSGECGGTAYVTFSNAYALETAVLLSGATIVDQPVCIIRWGEYTDE   84 (242)
Q Consensus         5 ~~tV~VsNLs~~~TE~dLrefFs~~G~I~~V~l~~~~~~~~~AfV~F~~~~aA~tAl~Lng~~l~g~~I~V~~a~~~~~~   84 (242)
                      .++|||+|||+.+||++|++||++||+|++|+|++++++.+||||+|++++++++|++|||.+|+|++|+|+++.++..|
T Consensus         4 ~rtVfVgNLs~~tTE~dLrefFS~~G~I~~V~I~~d~~~~GfAFVtF~d~eaAe~AllLnG~~l~gr~V~Vt~a~~~~~p   83 (260)
T PLN03120          4 VRTVKVSNVSLKATERDIKEFFSFSGDIEYVEMQSENERSQIAYVTFKDPQGAETALLLSGATIVDQSVTITPAEDYQLP   83 (260)
T ss_pred             CCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeecCCCCCEEEEEeCcHHHHHHHHHhcCCeeCCceEEEEeccCCCCC
Confidence            58999999999999999999999999999999999887778999999999999999999999999999999999998877


Q ss_pred             CCCCCCCCCCCCCCCCCccccCccccCcchhhhhHHHHHHHHhhccceecHHHHHHHHHhhhhcCCcHHHHHHHHhhhhc
Q 026156           85 PNPWISSWGFDENSGSTTTHVGQFVSTPGEAVTVAQDAVKTMIAKGYVLSKDALVKAKALDESYGLSASAAAKVAELSNR  164 (242)
Q Consensus        85 ~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~a~~~a~~iva~~LA~Gyvl~~~ai~kA~~~Dekh~~ss~~~~~v~~~d~k  164 (242)
                      +......+.            +.....|+.+++++|+||++||||||+||||||+|||+|||+||||++|+++|++||+|
T Consensus        84 ~~~~~~~~~------------~~~~~~~~~~~~~a~~vva~mLAkGy~l~~dA~~kAk~fDekH~~ss~a~a~v~~~d~k  151 (260)
T PLN03120         84 PEALAPLSS------------NSPASGAESAVKKAEDVVSSMLAKGFILGKDAVNKAKAFDEKHQLTSTASAKVASLDKK  151 (260)
T ss_pred             ccccccccc------------ccCCCCccchhhHHHHHHHHHHhhhhhhhHHHHHHHHHHHHhhchHHHHHHHHHhhhhh
Confidence            664322100            11223567789999999999999999999999999999999999999999999999999


Q ss_pred             cccchhhhhHH----HHHHHhhhhhchhHHhhHhhhhhhhhhhhcccccccchhhhhhhhhHhhHHHHHHHHHHhhcccC
Q 026156          165 IGLTDKINASM----EAIKSVDEKYHVSDVTKSAASFTGKTAVAAGTAVVNSRYFAKGALWVSGVLERAAKAAADLGAHG  240 (242)
Q Consensus       165 ~g~t~k~~~g~----~~~~~vD~k~~vs~~t~sa~~~~~~~~~~~~~~~~~~~y~~~ga~w~~~a~~~~a~~~~~~~~~~  240 (242)
                      |||||||++|+    +++|+|||||||||||++|+.++||++++||++||+||||++||+||||||+||||||.|+|+++
T Consensus       152 ~gltek~~~g~~~v~~~~k~vDeky~vs~kt~sa~~~~~~~~~~a~sai~~~~y~~~ga~w~~~a~~~~a~aa~~~~~~~  231 (260)
T PLN03120        152 IGLSEKLSAGTAVVNEKVKEVDQKYQVSEKTKSALAAAEQKVSSAGSAIMKNRYVLTGASWVTGAFNKVAKAAEEVGQKT  231 (260)
T ss_pred             cCcccccccchHHHHHHHHhhhhhhchhHHHHHHHHHHHHHHHHHHHHHhcCcccccchHHHHHHHHHHHHHHHHHhhhh
Confidence            99999999999    89999999999999999999999999999999999999999999999999999999999999998


Q ss_pred             C
Q 026156          241 A  241 (242)
Q Consensus       241 ~  241 (242)
                      +
T Consensus       232 ~  232 (260)
T PLN03120        232 K  232 (260)
T ss_pred             H
Confidence            6

>PLN03134 glycine-rich RNA-binding protein 4; Provisional

Probab=99.56  E-value=4.7e-14  Score=116.43  Aligned_cols=80  Identities=20%  Similarity=0.316  Sum_probs=71.1

Q ss_pred             CcEEEEeCCCCCCCHHHHHHHhccCCCceEEEEeecCC---cCceEEEEecCHHHHHHHH-hcCCCeecCeeEEEEecCC
Q 026156            5 GYVAEVVGLSPNATEKDIHEFFSHCGDPVHVEIIRSGE---CGGTAYVTFSNAYALETAV-LLSGATIVDQPVCIIRWGE   80 (242)
Q Consensus         5 ~~tV~VsNLs~~~TE~dLrefFs~~G~I~~V~l~~~~~---~~~~AfV~F~~~~aA~tAl-~Lng~~l~g~~I~V~~a~~   80 (242)
                      .++|||+||++.+||++|+++|+.||+|.+|.|+.+..   ..+||||+|.++++|+.|+ .|||..|+|+.|.|..+.+
T Consensus        34 ~~~lfVgnL~~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~kGfaFV~F~~~e~A~~Al~~lng~~i~Gr~l~V~~a~~  113 (144)
T PLN03134         34 STKLFIGGLSWGTDDASLRDAFAHFGDVVDAKVIVDRETGRSRGFGFVNFNDEGAATAAISEMDGKELNGRHIRVNPAND  113 (144)
T ss_pred             CCEEEEeCCCCCCCHHHHHHHHhcCCCeEEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHcCCCEECCEEEEEEeCCc
Confidence            36899999999999999999999999999999997753   3479999999999999996 6999999999999998765


Q ss_pred             CCCC
Q 026156           81 YTDE   84 (242)
Q Consensus        81 ~~~~   84 (242)
                      .+..
T Consensus       114 ~~~~  117 (144)
T PLN03134        114 RPSA  117 (144)
T ss_pred             CCCC
Confidence            4443

>PF00076 RRM_1: RNA recognition motif

Probab=99.55  E-value=1.9e-14  Score=101.26  Aligned_cols=67  Identities=28%  Similarity=0.506  Sum_probs=61.1

Q ss_pred             EEEeCCCCCCCHHHHHHHhccCCCceEEEEeec-C-CcCceEEEEecCHHHHHHHH-hcCCCeecCeeEE
Q 026156            8 AEVVGLSPNATEKDIHEFFSHCGDPVHVEIIRS-G-ECGGTAYVTFSNAYALETAV-LLSGATIVDQPVC   74 (242)
Q Consensus         8 V~VsNLs~~~TE~dLrefFs~~G~I~~V~l~~~-~-~~~~~AfV~F~~~~aA~tAl-~Lng~~l~g~~I~   74 (242)
                      |||+|||+.+|+++|+++|+.||+|..+.+..+ . ...++|||+|.++++|+.|+ .|||..++|+.|+
T Consensus         1 l~v~nlp~~~t~~~l~~~f~~~g~i~~~~~~~~~~~~~~~~a~V~F~~~~~a~~a~~~l~g~~~~~~~ir   70 (70)
T PF00076_consen    1 LYVGNLPPDVTEEELRDFFSQFGKIESIKVMRNSSGKSKGYAFVEFESEEDAEKALEELNGKKINGRKIR   70 (70)
T ss_dssp             EEEESETTTSSHHHHHHHHHTTSTEEEEEEEEETTSSEEEEEEEEESSHHHHHHHHHHHTTEEETTEEEE
T ss_pred             cEEcCCCCcCCHHHHHHHHHHhhhcccccccccccccccceEEEEEcCHHHHHHHHHHcCCCEECccCcC
Confidence            799999999999999999999999999999985 2 23479999999999999996 5999999999885

(a.k.a. RRM, RBD, or RNP domain); InterPro: IPR000504 Many eukaryotic proteins containing one or more copies of a putative RNA-binding domain of about 90 amino acids are known to bind single-stranded RNAs [, , ]. The largest group of single strand RNA-binding proteins is the eukaryotic RNA recognition motif (RRM) family that contains an eight amino acid RNP-1 consensus sequence [, ]. RRM proteins have a variety of RNA binding preferences and functions, and include heterogeneous nuclear ribonucleoproteins (hnRNPs), proteins implicated in regulation of alternative splicing (SR, U2AF, Sxl), protein components of small nuclear ribonucleoproteins (U1 and U2 snRNPs), and proteins that regulate RNA stability and translation (PABP, La, Hu) [, , ]. The RRM in heterodimeric splicing factor U2 snRNP auxiliary factor (U2AF) appears to have two RRM-like domains with specialised features for protein recognition []. The motif also appears in a few single stranded DNA binding proteins. The typical RRM consists of four anti-parallel beta-strands and two alpha-helices arranged in a beta-alpha-beta-beta-alpha-beta fold with side chains that stack with RNA bases. Specificity of RNA binding is determined by multiple contacts with surrounding amino acids. A third helix is present during RNA binding in some cases []. The RRM is reviewed in a number of publications [, , ].; GO: 0003676 nucleic acid binding; PDB: 2RNE_A 2DGO_A 2DO4_A 1YTY_B 2VOO_B 2VOP_A 2VON_B 1ZH5_B 2VOD_A 1S79_A ....

>TIGR01661 ELAV_HUD_SF ELAV/HuD family splicing factor

Probab=99.44  E-value=6.7e-13  Score=121.46  Aligned_cols=76  Identities=28%  Similarity=0.410  Sum_probs=68.6

Q ss_pred             CcEEEEeCCCCCCCHHHHHHHhccCCCceEEEEeecCC---cCceEEEEecCHHHHHHH-HhcCCCeecCeeEEEEecCC
Q 026156            5 GYVAEVVGLSPNATEKDIHEFFSHCGDPVHVEIIRSGE---CGGTAYVTFSNAYALETA-VLLSGATIVDQPVCIIRWGE   80 (242)
Q Consensus         5 ~~tV~VsNLs~~~TE~dLrefFs~~G~I~~V~l~~~~~---~~~~AfV~F~~~~aA~tA-l~Lng~~l~g~~I~V~~a~~   80 (242)
                      +++|||+|||+.+++++|+++|+.||.|++|+|+.+..   ..+||||+|.++++|..| ..|||..|+|+.|+|....+
T Consensus       269 ~~~lfV~NL~~~~~e~~L~~~F~~fG~v~~v~i~~d~~t~~skG~aFV~F~~~~~A~~Ai~~lnG~~~~gr~i~V~~~~~  348 (352)
T TIGR01661       269 GYCIFVYNLSPDTDETVLWQLFGPFGAVQNVKIIRDLTTNQCKGYGFVSMTNYDEAAMAILSLNGYTLGNRVLQVSFKTN  348 (352)
T ss_pred             CcEEEEeCCCCCCCHHHHHHHHHhCCCeEEEEEeEcCCCCCccceEEEEECCHHHHHHHHHHhCCCEECCeEEEEEEccC
Confidence            35799999999999999999999999999999998742   457999999999999999 57999999999999986543

These proteins contain 3 RNA-recognition motifs (rrm: pfam00076).

>KOG0125 consensus Ataxin 2-binding protein (RRM superfamily) [General function prediction only]

Probab=99.41  E-value=4.6e-13  Score=122.59  Aligned_cols=78  Identities=19%  Similarity=0.254  Sum_probs=71.9

Q ss_pred             CCcEEEEeCCCCCCCHHHHHHHhccCCCceEEEEe-ecCCcCceEEEEecCHHHHHHH-HhcCCCeecCeeEEEEecCCC
Q 026156            4 GGYVAEVVGLSPNATEKDIHEFFSHCGDPVHVEII-RSGECGGTAYVTFSNAYALETA-VLLSGATIVDQPVCIIRWGEY   81 (242)
Q Consensus         4 ~~~tV~VsNLs~~~TE~dLrefFs~~G~I~~V~l~-~~~~~~~~AfV~F~~~~aA~tA-l~Lng~~l~g~~I~V~~a~~~   81 (242)
                      +.+.|+|+|||+...|-||+.+|.+||+|.+|+|+ +++++++|+||||+++++|++| -.|+|+.+.||.|.|..+...
T Consensus        95 ~pkRLhVSNIPFrFRdpDL~aMF~kfG~VldVEIIfNERGSKGFGFVTmen~~dadRARa~LHgt~VEGRkIEVn~ATar  174 (376)
T KOG0125|consen   95 TPKRLHVSNIPFRFRDPDLRAMFEKFGKVLDVEIIFNERGSKGFGFVTMENPADADRARAELHGTVVEGRKIEVNNATAR  174 (376)
T ss_pred             CCceeEeecCCccccCccHHHHHHhhCceeeEEEEeccCCCCccceEEecChhhHHHHHHHhhcceeeceEEEEeccchh
Confidence            44789999999999999999999999999999998 5567789999999999999999 799999999999999977554

>PF14259 RRM_6: RNA recognition motif (a

Probab=99.40  E-value=1.3e-12  Score=93.12  Aligned_cols=67  Identities=31%  Similarity=0.530  Sum_probs=58.1

Q ss_pred             EEEeCCCCCCCHHHHHHHhccCCCceEEEEeecCC--cCceEEEEecCHHHHHHHH-hcCCCeecCeeEE
Q 026156            8 AEVVGLSPNATEKDIHEFFSHCGDPVHVEIIRSGE--CGGTAYVTFSNAYALETAV-LLSGATIVDQPVC   74 (242)
Q Consensus         8 V~VsNLs~~~TE~dLrefFs~~G~I~~V~l~~~~~--~~~~AfV~F~~~~aA~tAl-~Lng~~l~g~~I~   74 (242)
                      |+|+|||+.+++++|++||+.||.|..|.+..++.  ..++|||+|.+++.|..|+ .++|..|+|+.|+
T Consensus         1 v~i~nlp~~~~~~~l~~~f~~~g~v~~v~~~~~~~~~~~~~a~v~f~~~~~a~~al~~~~~~~~~g~~l~   70 (70)
T PF14259_consen    1 VYISNLPPSTTEEDLRNFFSRFGPVEKVRLIKNKDGQSRGFAFVEFSSEEDAKRALELLNGKEIDGRKLR   70 (70)
T ss_dssp             EEEESSTTT--HHHHHHHCTTSSBEEEEEEEESTTSSEEEEEEEEESSHHHHHHHHHHHTTEEETTEEEE
T ss_pred             CEEeCCCCCCCHHHHHHHHHhcCCcceEEEEeeeccccCCEEEEEeCCHHHHHHHHHHCCCcEECCEEcC
Confidence            79999999999999999999999999999997643  3479999999999999995 5666999999874

k.a. RRM, RBD, or RNP domain); PDB: 2DNN_A 1WI6_A 2EVZ_A 2ADC_A 1QM9_A 2KG1_A 2HGN_A 1U2F_A 2G4B_A 2HZC_A ....

>TIGR01661 ELAV_HUD_SF ELAV/HuD family splicing factor

Probab=99.40  E-value=1.5e-12  Score=119.10  Aligned_cols=76  Identities=18%  Similarity=0.246  Sum_probs=68.8

Q ss_pred             CcEEEEeCCCCCCCHHHHHHHhccCCCceEEEEeecCC---cCceEEEEecCHHHHHHHH-hcCCCeecCeeEEEEecCC
Q 026156            5 GYVAEVVGLSPNATEKDIHEFFSHCGDPVHVEIIRSGE---CGGTAYVTFSNAYALETAV-LLSGATIVDQPVCIIRWGE   80 (242)
Q Consensus         5 ~~tV~VsNLs~~~TE~dLrefFs~~G~I~~V~l~~~~~---~~~~AfV~F~~~~aA~tAl-~Lng~~l~g~~I~V~~a~~   80 (242)
                      ..+|||+|||+.++|++|+++|+.||+|.+|+|+++..   ..+||||+|.++++|+.|+ .|||..|.|+.|.|..+.+
T Consensus         3 ~~~l~V~nLp~~~~e~~l~~~F~~~G~i~~v~i~~d~~~g~s~g~afV~f~~~~~A~~Ai~~l~g~~l~g~~i~v~~a~~   82 (352)
T TIGR01661         3 KTNLIVNYLPQTMTQEEIRSLFTSIGEIESCKLVRDKVTGQSLGYGFVNYVRPEDAEKAVNSLNGLRLQNKTIKVSYARP   82 (352)
T ss_pred             CcEEEEeCCCCCCCHHHHHHHHHccCCEEEEEEEEcCCCCccceEEEEEECcHHHHHHHHhhcccEEECCeeEEEEeecc
Confidence            46999999999999999999999999999999998743   3479999999999999995 7999999999999986643

These proteins contain 3 RNA-recognition motifs (rrm: pfam00076).

>smart00362 RRM_2 RNA recognition motif

Probab=99.35  E-value=7e-12  Score=86.46  Aligned_cols=70  Identities=30%  Similarity=0.431  Sum_probs=63.0

Q ss_pred             EEEEeCCCCCCCHHHHHHHhccCCCceEEEEeecCC-cCceEEEEecCHHHHHHH-HhcCCCeecCeeEEEE
Q 026156            7 VAEVVGLSPNATEKDIHEFFSHCGDPVHVEIIRSGE-CGGTAYVTFSNAYALETA-VLLSGATIVDQPVCII   76 (242)
Q Consensus         7 tV~VsNLs~~~TE~dLrefFs~~G~I~~V~l~~~~~-~~~~AfV~F~~~~aA~tA-l~Lng~~l~g~~I~V~   76 (242)
                      +|+|+|||+.+++++|+++|..||+|.++.+..+.+ ..++|||+|.+++.++.| ..++|..+.|+.|.|.
T Consensus         1 ~v~i~~l~~~~~~~~l~~~~~~~g~v~~~~~~~~~~~~~~~~~v~f~~~~~a~~a~~~~~~~~~~~~~i~v~   72 (72)
T smart00362        1 TLFVGNLPPDVTEEDLKELFSKFGPIESVKIPKDTGKSKGFAFVEFESEEDAEKAIEALNGTKLGGRPLRVE   72 (72)
T ss_pred             CEEEcCCCCcCCHHHHHHHHHhcCCEEEEEEecCCCCCCceEEEEeCCHHHHHHHHHHhCCcEECCEEEeeC
Confidence            589999999999999999999999999999987642 347999999999999999 5789999999998873

>TIGR01659 sex-lethal sex-lethal family splicing factor

Probab=99.34  E-value=4.5e-12  Score=118.37  Aligned_cols=76  Identities=21%  Similarity=0.264  Sum_probs=68.6

Q ss_pred             CCcEEEEeCCCCCCCHHHHHHHhccCCCceEEEEeecCC---cCceEEEEecCHHHHHHHH-hcCCCeecCeeEEEEecC
Q 026156            4 GGYVAEVVGLSPNATEKDIHEFFSHCGDPVHVEIIRSGE---CGGTAYVTFSNAYALETAV-LLSGATIVDQPVCIIRWG   79 (242)
Q Consensus         4 ~~~tV~VsNLs~~~TE~dLrefFs~~G~I~~V~l~~~~~---~~~~AfV~F~~~~aA~tAl-~Lng~~l~g~~I~V~~a~   79 (242)
                      ..++|||+|||+++||++|+++|+.||+|++|+|+.+..   ..+||||+|.++++|+.|+ .|||..|.+++|+|..+.
T Consensus       106 ~~~~LfVgnLp~~~te~~L~~lF~~~G~V~~v~i~~d~~tg~srGyaFVeF~~~e~A~~Ai~~LnG~~l~gr~i~V~~a~  185 (346)
T TIGR01659       106 SGTNLIVNYLPQDMTDRELYALFRTIGPINTCRIMRDYKTGYSFGYAFVDFGSEADSQRAIKNLNGITVRNKRLKVSYAR  185 (346)
T ss_pred             CCcEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEecCCCCccCcEEEEEEccHHHHHHHHHHcCCCccCCceeeeeccc
Confidence            357999999999999999999999999999999998744   3469999999999999995 799999999999998653

This model describes the sex-lethal family of splicing factors found in Dipteran insects. The sex-lethal phenotype, however, may be limited to the Melanogasters and closely related species. In Drosophila the protein acts as an inhibitor of splicing. This subfamily is most closely related to the ELAV/HUD subfamily of splicing factors (TIGR01661).

>KOG0121 consensus Nuclear cap-binding protein complex, subunit CBP20 (RRM superfamily) [RNA processing and modification]

Probab=99.32  E-value=3.6e-12  Score=103.54  Aligned_cols=78  Identities=27%  Similarity=0.309  Sum_probs=68.8

Q ss_pred             CcEEEEeCCCCCCCHHHHHHHhccCCCceEEEEeecCCc---CceEEEEecCHHHHHHH-HhcCCCeecCeeEEEEecCC
Q 026156            5 GYVAEVVGLSPNATEKDIHEFFSHCGDPVHVEIIRSGEC---GGTAYVTFSNAYALETA-VLLSGATIVDQPVCIIRWGE   80 (242)
Q Consensus         5 ~~tV~VsNLs~~~TE~dLrefFs~~G~I~~V~l~~~~~~---~~~AfV~F~~~~aA~tA-l~Lng~~l~g~~I~V~~a~~   80 (242)
                      .+||||+|||..++|++|.++||.||+|..|.|--+..+   -+|+||+|-.+++|+.| ..+||+.|++++|.|.-...
T Consensus        36 S~tvyVgNlSfyttEEqiyELFs~cG~irriiMGLdr~kktpCGFCFVeyy~~~dA~~AlryisgtrLddr~ir~D~D~G  115 (153)
T KOG0121|consen   36 SCTVYVGNLSFYTTEEQIYELFSKCGDIRRIIMGLDRFKKTPCGFCFVEYYSRDDAEDALRYISGTRLDDRPIRIDWDAG  115 (153)
T ss_pred             cceEEEeeeeeeecHHHHHHHHHhccchheeEeccccCCcCccceEEEEEecchhHHHHHHHhccCcccccceeeecccc
Confidence            369999999999999999999999999999998766543   36999999999999999 58899999999999985544


Q ss_pred             CC
Q 026156           81 YT   82 (242)
Q Consensus        81 ~~   82 (242)
                      +.
T Consensus       116 F~  117 (153)
T KOG0121|consen  116 FV  117 (153)
T ss_pred             ch
Confidence            43

>KOG0107 consensus Alternative splicing factor SRp20/9G8 (RRM superfamily) [RNA processing and modification]

Probab=99.31  E-value=6e-12  Score=106.79  Aligned_cols=77  Identities=25%  Similarity=0.279  Sum_probs=69.5

Q ss_pred             CCcEEEEeCCCCCCCHHHHHHHhccCCCceEEEEeecCCcCceEEEEecCHHHHHHH-HhcCCCeecCeeEEEEecCCCC
Q 026156            4 GGYVAEVVGLSPNATEKDIHEFFSHCGDPVHVEIIRSGECGGTAYVTFSNAYALETA-VLLSGATIVDQPVCIIRWGEYT   82 (242)
Q Consensus         4 ~~~tV~VsNLs~~~TE~dLrefFs~~G~I~~V~l~~~~~~~~~AfV~F~~~~aA~tA-l~Lng~~l~g~~I~V~~a~~~~   82 (242)
                      ..+.|||+||++.+++.||+..|+.||+|.+|.|-..  +.+||||+|+++.+|+.| -.|||..|+|..|.|+.....+
T Consensus         9 ~~~kVYVGnL~~~a~k~eLE~~F~~yG~lrsvWvArn--PPGfAFVEFed~RDA~DAvr~LDG~~~cG~r~rVE~S~G~~   86 (195)
T KOG0107|consen    9 GNTKVYVGNLGSRATKRELERAFSKYGPLRSVWVARN--PPGFAFVEFEDPRDAEDAVRYLDGKDICGSRIRVELSTGRP   86 (195)
T ss_pred             CCceEEeccCCCCcchHHHHHHHHhcCcceeEEEeec--CCCceEEeccCcccHHHHHhhcCCccccCceEEEEeecCCc
Confidence            4579999999999999999999999999999999873  357999999999999999 6999999999999998765433

>KOG0105 consensus Alternative splicing factor ASF/SF2 (RRM superfamily) [RNA processing and modification]

Probab=99.28  E-value=7.4e-12  Score=107.38  Aligned_cols=76  Identities=18%  Similarity=0.106  Sum_probs=70.2

Q ss_pred             CcEEEEeCCCCCCCHHHHHHHhccCCCceEEEEeecCCcCceEEEEecCHHHHHHH-HhcCCCeecCeeEEEEecCC
Q 026156            5 GYVAEVVGLSPNATEKDIHEFFSHCGDPVHVEIIRSGECGGTAYVTFSNAYALETA-VLLSGATIVDQPVCIIRWGE   80 (242)
Q Consensus         5 ~~tV~VsNLs~~~TE~dLrefFs~~G~I~~V~l~~~~~~~~~AfV~F~~~~aA~tA-l~Lng~~l~g~~I~V~~a~~   80 (242)
                      .++|||+|||+.+.|++|+++|.+||.|..|+|....+...||||+|+++.+|+.| .--||..++|+.|.|.....
T Consensus         6 ~~~iyvGNLP~diRekeieDlFyKyg~i~~ieLK~r~g~ppfafVeFEd~RDAeDAiygRdGYdydg~rLRVEfprg   82 (241)
T KOG0105|consen    6 SRRIYVGNLPGDIREKEIEDLFYKYGRIREIELKNRPGPPPFAFVEFEDPRDAEDAIYGRDGYDYDGCRLRVEFPRG   82 (241)
T ss_pred             cceEEecCCCcchhhccHHHHHhhhcceEEEEeccCCCCCCeeEEEecCccchhhhhhcccccccCcceEEEEeccC
Confidence            47999999999999999999999999999999998777678999999999999999 58899999999999996643

>TIGR01622 SF-CC1 splicing factor, CC1-like family

Probab=99.27  E-value=2e-11  Score=115.83  Aligned_cols=74  Identities=28%  Similarity=0.466  Sum_probs=68.3

Q ss_pred             CcEEEEeCCCCCCCHHHHHHHhccCCCceEEEEeecCC---cCceEEEEecCHHHHHHHHhcCCCeecCeeEEEEec
Q 026156            5 GYVAEVVGLSPNATEKDIHEFFSHCGDPVHVEIIRSGE---CGGTAYVTFSNAYALETAVLLSGATIVDQPVCIIRW   78 (242)
Q Consensus         5 ~~tV~VsNLs~~~TE~dLrefFs~~G~I~~V~l~~~~~---~~~~AfV~F~~~~aA~tAl~Lng~~l~g~~I~V~~a   78 (242)
                      .++|||+|||+.+++++|++||+.||+|.+|.|+.+..   ..++|||+|.+.+.|..|+.|+|..|.|++|.|...
T Consensus        89 ~~~l~V~nlp~~~~~~~l~~~F~~~G~v~~v~i~~d~~~~~skg~afVeF~~~e~A~~Al~l~g~~~~g~~i~v~~~  165 (457)
T TIGR01622        89 DRTVFVLQLALKARERDLYEFFSKVGKVRDVQCIKDRNSRRSKGVAYVEFYDVESVIKALALTGQMLLGRPIIVQSS  165 (457)
T ss_pred             CcEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEeecCCCCCcceEEEEEECCHHHHHHHHHhCCCEECCeeeEEeec
Confidence            47999999999999999999999999999999997643   347999999999999999999999999999999864

A homologous gene from Plasmodium falciparum was identified in the course of the analysis of that genome at TIGR and was included in the model.

>PLN03213 repressor of silencing 3; Provisional

Probab=99.24  E-value=2.3e-11  Score=116.64  Aligned_cols=75  Identities=24%  Similarity=0.311  Sum_probs=68.6

Q ss_pred             CcEEEEeCCCCCCCHHHHHHHhccCCCceEEEEeecCCcCceEEEEecCH--HHHHHH-HhcCCCeecCeeEEEEecCC
Q 026156            5 GYVAEVVGLSPNATEKDIHEFFSHCGDPVHVEIIRSGECGGTAYVTFSNA--YALETA-VLLSGATIVDQPVCIIRWGE   80 (242)
Q Consensus         5 ~~tV~VsNLs~~~TE~dLrefFs~~G~I~~V~l~~~~~~~~~AfV~F~~~--~aA~tA-l~Lng~~l~g~~I~V~~a~~   80 (242)
                      ..+|||+||++.+++++|+..|+.||.|.+|+|+++.+ .+||||+|..+  ..+.+| -.|||..+.|+.|+|..+.+
T Consensus        10 gMRIYVGNLSydVTEDDLravFSeFGsVkdVEIpRETG-RGFAFVEMssdddaEeeKAISaLNGAEWKGR~LKVNKAKP   87 (759)
T PLN03213         10 GVRLHVGGLGESVGRDDLLKIFSPMGTVDAVEFVRTKG-RSFAYIDFSPSSTNSLTKLFSTYNGCVWKGGRLRLEKAKE   87 (759)
T ss_pred             ceEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEecccC-CceEEEEecCCcHHHHHHHHHHhcCCeecCceeEEeeccH
Confidence            36899999999999999999999999999999998766 68999999988  678899 58999999999999987654

>KOG0148 consensus Apoptosis-promoting RNA-binding protein TIA-1/TIAR (RRM superfamily) [RNA processing and modification; Translation, ribosomal structure and biogenesis]

Probab=99.24  E-value=3.2e-11  Score=108.33  Aligned_cols=76  Identities=25%  Similarity=0.312  Sum_probs=69.5

Q ss_pred             CCCCcEEEEeCCCCCCCHHHHHHHhccCCCceEEEEeecCCcCceEEEEecCHHHHHHH-HhcCCCeecCeeEEEEecCC
Q 026156            2 YAGGYVAEVVGLSPNATEKDIHEFFSHCGDPVHVEIIRSGECGGTAYVTFSNAYALETA-VLLSGATIVDQPVCIIRWGE   80 (242)
Q Consensus         2 ~~~~~tV~VsNLs~~~TE~dLrefFs~~G~I~~V~l~~~~~~~~~AfV~F~~~~aA~tA-l~Lng~~l~g~~I~V~~a~~   80 (242)
                      ++++++|||+||++.+||++||+.|+.||+|.+|++..+   .+|+||.|+..++|-.| +.+||++|.|+.|++. |+.
T Consensus       161 sp~NtsVY~G~I~~~lte~~mr~~Fs~fG~I~EVRvFk~---qGYaFVrF~tkEaAahAIv~mNntei~G~~VkCs-WGK  236 (321)
T KOG0148|consen  161 SPDNTSVYVGNIASGLTEDLMRQTFSPFGPIQEVRVFKD---QGYAFVRFETKEAAAHAIVQMNNTEIGGQLVRCS-WGK  236 (321)
T ss_pred             CCCCceEEeCCcCccccHHHHHHhcccCCcceEEEEecc---cceEEEEecchhhHHHHHHHhcCceeCceEEEEe-ccc
Confidence            467899999999999999999999999999999999976   46999999999999999 7999999999999986 544


Q ss_pred             C
Q 026156           81 Y   81 (242)
Q Consensus        81 ~   81 (242)
                      .
T Consensus       237 e  237 (321)
T KOG0148|consen  237 E  237 (321)
T ss_pred             c
Confidence            3

>TIGR01645 half-pint poly-U binding splicing factor, half-pint family

Probab=99.22  E-value=5.7e-11  Score=117.91  Aligned_cols=78  Identities=17%  Similarity=0.209  Sum_probs=70.5

Q ss_pred             CcEEEEeCCCCCCCHHHHHHHhccCCCceEEEEeecCC---cCceEEEEecCHHHHHHH-HhcCCCeecCeeEEEEecCC
Q 026156            5 GYVAEVVGLSPNATEKDIHEFFSHCGDPVHVEIIRSGE---CGGTAYVTFSNAYALETA-VLLSGATIVDQPVCIIRWGE   80 (242)
Q Consensus         5 ~~tV~VsNLs~~~TE~dLrefFs~~G~I~~V~l~~~~~---~~~~AfV~F~~~~aA~tA-l~Lng~~l~g~~I~V~~a~~   80 (242)
                      .++|||+||++.+++++|+++|+.||.|.+++|.++..   ..+||||+|.+.+++..| ..|||..|+|+.|+|..+-.
T Consensus       204 ~~rLfVgnLp~~vteedLk~lFs~FG~I~svrl~~D~~tgksKGfGFVeFe~~e~A~kAI~amNg~elgGr~LrV~kAi~  283 (612)
T TIGR01645       204 FNRIYVASVHPDLSETDIKSVFEAFGEIVKCQLARAPTGRGHKGYGFIEYNNLQSQSEAIASMNLFDLGGQYLRVGKCVT  283 (612)
T ss_pred             cceEEeecCCCCCCHHHHHHHHhhcCCeeEEEEEecCCCCCcCCeEEEEECCHHHHHHHHHHhCCCeeCCeEEEEEecCC
Confidence            36899999999999999999999999999999998743   357999999999999999 59999999999999998765


Q ss_pred             CC
Q 026156           81 YT   82 (242)
Q Consensus        81 ~~   82 (242)
                      .+
T Consensus       284 pP  285 (612)
T TIGR01645       284 PP  285 (612)
T ss_pred             Cc
Confidence            43

In the case of PUF60 (GP|6176532), in complex with p54, and in the presence of U2AF, facilitates association of U2 snRNP with pre-mRNA.

>TIGR01645 half-pint poly-U binding splicing factor, half-pint family

Probab=99.21  E-value=4.1e-11  Score=118.92  Aligned_cols=75  Identities=17%  Similarity=0.157  Sum_probs=68.1

Q ss_pred             CcEEEEeCCCCCCCHHHHHHHhccCCCceEEEEeecCC---cCceEEEEecCHHHHHHHH-hcCCCeecCeeEEEEecC
Q 026156            5 GYVAEVVGLSPNATEKDIHEFFSHCGDPVHVEIIRSGE---CGGTAYVTFSNAYALETAV-LLSGATIVDQPVCIIRWG   79 (242)
Q Consensus         5 ~~tV~VsNLs~~~TE~dLrefFs~~G~I~~V~l~~~~~---~~~~AfV~F~~~~aA~tAl-~Lng~~l~g~~I~V~~a~   79 (242)
                      .++|||+||++.++|++|+++|+.||.|.+|.|+.+..   ..+||||+|.++++++.|+ .|||..|+|+.|.|.+..
T Consensus       107 ~~rLfVGnLp~~~tEe~Lr~lF~~fG~I~sV~I~~D~~TgkskGfAFVeF~s~e~A~~Ai~~lnG~~i~GR~IkV~rp~  185 (612)
T TIGR01645       107 MCRVYVGSISFELREDTIRRAFDPFGPIKSINMSWDPATGKHKGFAFVEYEVPEAAQLALEQMNGQMLGGRNIKVGRPS  185 (612)
T ss_pred             CCEEEEcCCCCCCCHHHHHHHHHccCCEEEEEEeecCCCCCcCCeEEEEeCcHHHHHHHHHhcCCeEEecceeeecccc
Confidence            47899999999999999999999999999999997743   3579999999999999995 799999999999998543

In the case of PUF60 (GP|6176532), in complex with p54, and in the presence of U2AF, facilitates association of U2 snRNP with pre-mRNA.

>cd00590 RRM RRM (RNA recognition motif), also known as RBD (RNA binding domain) or RNP (ribonucleoprotein domain), is a highly abundant domain in eukaryotes found in proteins involved in post-transcriptional gene expression processes including mRNA and rRNA processing, RNA export, and RNA stability

Probab=99.21  E-value=1.3e-10  Score=80.44  Aligned_cols=70  Identities=31%  Similarity=0.490  Sum_probs=63.6

Q ss_pred             EEEEeCCCCCCCHHHHHHHhccCCCceEEEEeecCC--cCceEEEEecCHHHHHHH-HhcCCCeecCeeEEEE
Q 026156            7 VAEVVGLSPNATEKDIHEFFSHCGDPVHVEIIRSGE--CGGTAYVTFSNAYALETA-VLLSGATIVDQPVCII   76 (242)
Q Consensus         7 tV~VsNLs~~~TE~dLrefFs~~G~I~~V~l~~~~~--~~~~AfV~F~~~~aA~tA-l~Lng~~l~g~~I~V~   76 (242)
                      +|+|+|||+.+++++|+++|..||.|..+.+..+..  ..++|||+|.+++++..| ..+++..+.|+.+.|.
T Consensus         1 ~i~i~~l~~~~~~~~i~~~~~~~g~i~~~~~~~~~~~~~~~~~~v~f~s~~~a~~a~~~~~~~~~~~~~~~v~   73 (74)
T cd00590           1 TLFVGNLPPDVTEEDLRELFSKFGKVESVRIVRDKDTKSKGFAFVEFEDEEDAEKALEALNGKELGGRPLRVE   73 (74)
T ss_pred             CEEEeCCCCccCHHHHHHHHHhcCCEEEEEEeeCCCCCcceEEEEEECCHHHHHHHHHHhCCCeECCeEEEEe
Confidence            489999999999999999999999999999997653  346999999999999999 6889999999999885

This domain is 90 amino acids in length and consists of a four-stranded beta-sheet packed against two alpha-helices. RRM usually interacts with ssRNA, but is also known to interact with ssDNA as well as proteins. RRM binds a variable number of nucleotides, ranging from two to eight. The active site includes three aromatic side-chains located within the conserved RNP1 and RNP2 motifs of the domain. The RRM domain is found in a variety heterogeneous nuclear ribonucleoproteins (hnRNPs), proteins implicated in regulation of alternative splicing, and protein components of small nuclear ribonucleoproteins (snRNPs).

>TIGR01622 SF-CC1 splicing factor, CC1-like family

Probab=99.21  E-value=9.3e-11  Score=111.35  Aligned_cols=80  Identities=23%  Similarity=0.299  Sum_probs=71.5

Q ss_pred             CcEEEEeCCCCCCCHHHHHHHhccCCCceEEEEeecCC---cCceEEEEecCHHHHHHHH-hcCCCeecCeeEEEEecCC
Q 026156            5 GYVAEVVGLSPNATEKDIHEFFSHCGDPVHVEIIRSGE---CGGTAYVTFSNAYALETAV-LLSGATIVDQPVCIIRWGE   80 (242)
Q Consensus         5 ~~tV~VsNLs~~~TE~dLrefFs~~G~I~~V~l~~~~~---~~~~AfV~F~~~~aA~tAl-~Lng~~l~g~~I~V~~a~~   80 (242)
                      .++|||+||++.+|+++|+++|+.||.|.+|.+..+..   ..++|||+|.+++.|..|+ .|||..|.|+.|.|..+.+
T Consensus       186 ~~~l~v~nl~~~~te~~l~~~f~~~G~i~~v~~~~d~~~g~~~g~afV~f~~~e~A~~A~~~l~g~~i~g~~i~v~~a~~  265 (457)
T TIGR01622       186 FLKLYVGNLHFNITEQELRQIFEPFGDIEDVQLHRDPETGRSKGFGFIQFHDAEEAKEALEVMNGFELAGRPIKVGYAQD  265 (457)
T ss_pred             CCEEEEcCCCCCCCHHHHHHHHHhcCCeEEEEEEEcCCCCccceEEEEEECCHHHHHHHHHhcCCcEECCEEEEEEEccC
Confidence            47999999999999999999999999999999997754   2479999999999999995 7999999999999998775


Q ss_pred             CCCC
Q 026156           81 YTDE   84 (242)
Q Consensus        81 ~~~~   84 (242)
                      ....
T Consensus       266 ~~~~  269 (457)
T TIGR01622       266 STYL  269 (457)
T ss_pred             CCcc
Confidence            5443

A homologous gene from Plasmodium falciparum was identified in the course of the analysis of that genome at TIGR and was included in the model.

>TIGR01659 sex-lethal sex-lethal family splicing factor

Probab=99.19  E-value=8.4e-11  Score=109.87  Aligned_cols=76  Identities=22%  Similarity=0.278  Sum_probs=66.9

Q ss_pred             CcEEEEeCCCCCCCHHHHHHHhccCCCceEEEEeecCC---cCceEEEEecCHHHHHHH-HhcCCCeecC--eeEEEEec
Q 026156            5 GYVAEVVGLSPNATEKDIHEFFSHCGDPVHVEIIRSGE---CGGTAYVTFSNAYALETA-VLLSGATIVD--QPVCIIRW   78 (242)
Q Consensus         5 ~~tV~VsNLs~~~TE~dLrefFs~~G~I~~V~l~~~~~---~~~~AfV~F~~~~aA~tA-l~Lng~~l~g--~~I~V~~a   78 (242)
                      .++|||+|||+.+||++|+++|+.||.|++|+|+++..   ..++|||+|.+.++|+.| ..||+..|.+  ++|.|..+
T Consensus       193 ~~~lfV~nLp~~vtee~L~~~F~~fG~V~~v~i~~d~~tg~~kG~aFV~F~~~e~A~~Ai~~lng~~~~g~~~~l~V~~a  272 (346)
T TIGR01659       193 DTNLYVTNLPRTITDDQLDTIFGKYGQIVQKNILRDKLTGTPRGVAFVRFNKREEAQEAISALNNVIPEGGSQPLTVRLA  272 (346)
T ss_pred             cceeEEeCCCCcccHHHHHHHHHhcCCEEEEEEeecCCCCccceEEEEEECCHHHHHHHHHHhCCCccCCCceeEEEEEC
Confidence            46899999999999999999999999999999998743   236999999999999999 5799999876  68888866


Q ss_pred             CC
Q 026156           79 GE   80 (242)
Q Consensus        79 ~~   80 (242)
                      .+
T Consensus       273 ~~  274 (346)
T TIGR01659       273 EE  274 (346)
T ss_pred             Cc
Confidence            54

This model describes the sex-lethal family of splicing factors found in Dipteran insects. The sex-lethal phenotype, however, may be limited to the Melanogasters and closely related species. In Drosophila the protein acts as an inhibitor of splicing. This subfamily is most closely related to the ELAV/HUD subfamily of splicing factors (TIGR01661).

>COG0724 RNA-binding proteins (RRM domain) [General function prediction only]

Probab=99.19  E-value=1.2e-10  Score=98.20  Aligned_cols=75  Identities=25%  Similarity=0.379  Sum_probs=68.8

Q ss_pred             CcEEEEeCCCCCCCHHHHHHHhccCCCceEEEEeecC---CcCceEEEEecCHHHHHHH-HhcCCCeecCeeEEEEecC
Q 026156            5 GYVAEVVGLSPNATEKDIHEFFSHCGDPVHVEIIRSG---ECGGTAYVTFSNAYALETA-VLLSGATIVDQPVCIIRWG   79 (242)
Q Consensus         5 ~~tV~VsNLs~~~TE~dLrefFs~~G~I~~V~l~~~~---~~~~~AfV~F~~~~aA~tA-l~Lng~~l~g~~I~V~~a~   79 (242)
                      .++|||+||++.+++++|+++|..||.|..|.+..+.   ...++|||+|.+++.+..| ..++|..|.|+.|.|....
T Consensus       115 ~~~l~v~nL~~~~~~~~l~~~F~~~g~~~~~~~~~d~~~~~~~g~~~v~f~~~~~~~~a~~~~~~~~~~~~~~~v~~~~  193 (306)
T COG0724         115 NNTLFVGNLPYDVTEEDLRELFKKFGPVKRVRLVRDRETGKSRGFAFVEFESEESAEKAIEELNGKELEGRPLRVQKAQ  193 (306)
T ss_pred             CceEEEeCCCCCCCHHHHHHHHHhcCceeEEEeeeccccCccCceEEEEecCHHHHHHHHHHcCCCeECCceeEeeccc
Confidence            3799999999999999999999999999999999874   2457999999999999999 6889999999999999854

>smart00360 RRM RNA recognition motif

Probab=99.18  E-value=1.2e-10  Score=79.85  Aligned_cols=67  Identities=30%  Similarity=0.513  Sum_probs=59.8

Q ss_pred             EeCCCCCCCHHHHHHHhccCCCceEEEEeecCC---cCceEEEEecCHHHHHHH-HhcCCCeecCeeEEEE
Q 026156           10 VVGLSPNATEKDIHEFFSHCGDPVHVEIIRSGE---CGGTAYVTFSNAYALETA-VLLSGATIVDQPVCII   76 (242)
Q Consensus        10 VsNLs~~~TE~dLrefFs~~G~I~~V~l~~~~~---~~~~AfV~F~~~~aA~tA-l~Lng~~l~g~~I~V~   76 (242)
                      |+|||+.+++++|+++|+.||.|..+.+..+..   ..++|||+|.+++.+..| ..|+|..+.|+.|.|.
T Consensus         1 i~~l~~~~~~~~l~~~f~~~g~v~~~~i~~~~~~~~~~~~a~v~f~~~~~a~~a~~~~~~~~~~~~~~~v~   71 (71)
T smart00360        1 VGNLPPDVTEEELRELFSKFGKIESVRLVRDKDTGKSKGFAFVEFESEEDAEKALEALNGKELDGRPLKVK   71 (71)
T ss_pred             CCCCCcccCHHHHHHHHHhhCCEeEEEEEeCCCCCCCCceEEEEeCCHHHHHHHHHHcCCCeeCCcEEEeC
Confidence            689999999999999999999999999987632   346999999999999999 5889999999998873

>TIGR01628 PABP-1234 polyadenylate binding protein, human types 1, 2, 3, 4 family

Probab=99.17  E-value=1.3e-10  Score=113.77  Aligned_cols=76  Identities=22%  Similarity=0.379  Sum_probs=68.3

Q ss_pred             CCcEEEEeCCCCCCCHHHHHHHhccCCCceEEEEeecC--CcCceEEEEecCHHHHHHH-HhcCCCeecCeeEEEEecC
Q 026156            4 GGYVAEVVGLSPNATEKDIHEFFSHCGDPVHVEIIRSG--ECGGTAYVTFSNAYALETA-VLLSGATIVDQPVCIIRWG   79 (242)
Q Consensus         4 ~~~tV~VsNLs~~~TE~dLrefFs~~G~I~~V~l~~~~--~~~~~AfV~F~~~~aA~tA-l~Lng~~l~g~~I~V~~a~   79 (242)
                      ...+|||+||++.+++++|+++|+.||.|.+|+++.+.  ...++|||+|.++++|..| ..|||..|+|++|.|..+.
T Consensus       284 ~~~~l~V~nl~~~~~~~~L~~~F~~~G~i~~~~i~~d~~g~~~g~gfV~f~~~~~A~~A~~~~~g~~~~gk~l~V~~a~  362 (562)
T TIGR01628       284 QGVNLYVKNLDDTVTDEKLRELFSECGEITSAKVMLDEKGVSRGFGFVCFSNPEEANRAVTEMHGRMLGGKPLYVALAQ  362 (562)
T ss_pred             CCCEEEEeCCCCccCHHHHHHHHHhcCCeEEEEEEECCCCCcCCeEEEEeCCHHHHHHHHHHhcCCeeCCceeEEEecc
Confidence            34689999999999999999999999999999999774  2357999999999999999 5899999999999997654

There are four paralogs in Homo sapiens which are expressed in testis, platelets, broadly expressed, or of unknown tissue range.

>TIGR01628 PABP-1234 polyadenylate binding protein, human types 1, 2, 3, 4 family

Probab=99.17  E-value=9.7e-11  Score=114.57  Aligned_cols=72  Identities=25%  Similarity=0.359  Sum_probs=66.2

Q ss_pred             EEEEeCCCCCCCHHHHHHHhccCCCceEEEEeecCC---cCceEEEEecCHHHHHHHH-hcCCCeecCeeEEEEec
Q 026156            7 VAEVVGLSPNATEKDIHEFFSHCGDPVHVEIIRSGE---CGGTAYVTFSNAYALETAV-LLSGATIVDQPVCIIRW   78 (242)
Q Consensus         7 tV~VsNLs~~~TE~dLrefFs~~G~I~~V~l~~~~~---~~~~AfV~F~~~~aA~tAl-~Lng~~l~g~~I~V~~a   78 (242)
                      +|||+||++++||++|+++|+.||.|.+|+++++..   ..++|||+|.++++|+.|+ .||+..|.|+.|+|...
T Consensus         2 sl~VgnLp~~vte~~L~~~F~~~G~v~~v~v~~d~~t~~s~G~afV~F~~~~~A~~Al~~ln~~~i~gk~i~i~~s   77 (562)
T TIGR01628         2 SLYVGDLDPDVTEAKLYDLFKPFGPVLSVRVCRDSVTRRSLGYGYVNFQNPADAERALETMNFKRLGGKPIRIMWS   77 (562)
T ss_pred             eEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHhCCCEECCeeEEeecc
Confidence            799999999999999999999999999999998754   3479999999999999995 89999999999999754

There are four paralogs in Homo sapiens which are expressed in testis, platelets, broadly expressed, or of unknown tissue range.

>KOG0114 consensus Predicted RNA-binding protein (RRM superfamily) [General function prediction only]

Probab=99.14  E-value=2.1e-10  Score=90.33  Aligned_cols=74  Identities=19%  Similarity=0.351  Sum_probs=69.9

Q ss_pred             cEEEEeCCCCCCCHHHHHHHhccCCCceEEEEeecCCcCceEEEEecCHHHHHHH-HhcCCCeecCeeEEEEecC
Q 026156            6 YVAEVVGLSPNATEKDIHEFFSHCGDPVHVEIIRSGECGGTAYVTFSNAYALETA-VLLSGATIVDQPVCIIRWG   79 (242)
Q Consensus         6 ~tV~VsNLs~~~TE~dLrefFs~~G~I~~V~l~~~~~~~~~AfV~F~~~~aA~tA-l~Lng~~l~g~~I~V~~a~   79 (242)
                      +-+||.|||.++|.+++.++|+.||.|..|+|-.+.++.++|||.|++-.+|.+| -.|+|..+.++.+.|-.|.
T Consensus        19 riLyirNLp~~ITseemydlFGkyg~IrQIRiG~~k~TrGTAFVVYedi~dAk~A~dhlsg~n~~~ryl~vlyyq   93 (124)
T KOG0114|consen   19 RILYIRNLPFKITSEEMYDLFGKYGTIRQIRIGNTKETRGTAFVVYEDIFDAKKACDHLSGYNVDNRYLVVLYYQ   93 (124)
T ss_pred             eeEEEecCCccccHHHHHHHhhcccceEEEEecCccCcCceEEEEehHhhhHHHHHHHhcccccCCceEEEEecC
Confidence            5799999999999999999999999999999998888889999999999999999 6999999999999998653

>KOG0149 consensus Predicted RNA-binding protein SEB4 (RRM superfamily) [General function prediction only]

Probab=99.14  E-value=9.6e-11  Score=103.33  Aligned_cols=73  Identities=21%  Similarity=0.216  Sum_probs=66.3

Q ss_pred             cEEEEeCCCCCCCHHHHHHHhccCCCceEEEEeecCC---cCceEEEEecCHHHHHHHHhcCCCeecCeeEEEEec
Q 026156            6 YVAEVVGLSPNATEKDIHEFFSHCGDPVHVEIIRSGE---CGGTAYVTFSNAYALETAVLLSGATIVDQPVCIIRW   78 (242)
Q Consensus         6 ~tV~VsNLs~~~TE~dLrefFs~~G~I~~V~l~~~~~---~~~~AfV~F~~~~aA~tAl~Lng~~l~g~~I~V~~a   78 (242)
                      ++|||+||+|.++.+.||++|..||+|.+..++.|+.   +++++||||+|.++|.+|+.=.+-.|+||+-.+..+
T Consensus        13 TKifVggL~w~T~~~~l~~yFeqfGeI~eavvitd~~t~rskGyGfVTf~d~~aa~rAc~dp~piIdGR~aNcnlA   88 (247)
T KOG0149|consen   13 TKIFVGGLAWETHKETLRRYFEQFGEIVEAVVITDKNTGRSKGYGFVTFRDAEAATRACKDPNPIIDGRKANCNLA   88 (247)
T ss_pred             EEEEEcCcccccchHHHHHHHHHhCceEEEEEEeccCCccccceeeEEeecHHHHHHHhcCCCCcccccccccchh
Confidence            5799999999999999999999999999999998854   347999999999999999888889999999887654

>TIGR01642 U2AF_lg U2 snRNP auxilliary factor, large subunit, splicing factor

Probab=99.13  E-value=3.6e-10  Score=108.60  Aligned_cols=76  Identities=18%  Similarity=0.231  Sum_probs=68.6

Q ss_pred             CcEEEEeCCCCCCCHHHHHHHhccCCCceEEEEeecCC---cCceEEEEecCHHHHHHHH-hcCCCeecCeeEEEEecCC
Q 026156            5 GYVAEVVGLSPNATEKDIHEFFSHCGDPVHVEIIRSGE---CGGTAYVTFSNAYALETAV-LLSGATIVDQPVCIIRWGE   80 (242)
Q Consensus         5 ~~tV~VsNLs~~~TE~dLrefFs~~G~I~~V~l~~~~~---~~~~AfV~F~~~~aA~tAl-~Lng~~l~g~~I~V~~a~~   80 (242)
                      .++|||+|||+.+++++|+++|+.||.|..+.|+.+..   ..+||||+|.+++.|..|+ .|||..|+|+.|.|..+..
T Consensus       295 ~~~l~v~nlp~~~~~~~l~~~f~~~G~i~~~~~~~~~~~g~~~g~afv~f~~~~~a~~A~~~l~g~~~~~~~l~v~~a~~  374 (509)
T TIGR01642       295 KDRIYIGNLPLYLGEDQIKELLESFGDLKAFNLIKDIATGLSKGYAFCEYKDPSVTDVAIAALNGKDTGDNKLHVQRACV  374 (509)
T ss_pred             CCEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEecCCCCCcCeEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEECcc
Confidence            36899999999999999999999999999999987632   3579999999999999995 8999999999999997743

Members of this subfamily are found in plants, metazoa and fungi.

>TIGR01649 hnRNP-L_PTB hnRNP-L/PTB/hephaestus splicing factor family

Probab=99.13  E-value=2.6e-10  Score=110.26  Aligned_cols=74  Identities=20%  Similarity=0.368  Sum_probs=67.4

Q ss_pred             CCcEEEEeCCCC-CCCHHHHHHHhccCCCceEEEEeecCCcCceEEEEecCHHHHHHHH-hcCCCeecCeeEEEEecC
Q 026156            4 GGYVAEVVGLSP-NATEKDIHEFFSHCGDPVHVEIIRSGECGGTAYVTFSNAYALETAV-LLSGATIVDQPVCIIRWG   79 (242)
Q Consensus         4 ~~~tV~VsNLs~-~~TE~dLrefFs~~G~I~~V~l~~~~~~~~~AfV~F~~~~aA~tAl-~Lng~~l~g~~I~V~~a~   79 (242)
                      ..++|||+||++ .+|+++|+++|+.||.|.+|+++.+.  .++|||+|.++++|..|+ .|||..|.|++|.|..+.
T Consensus       274 ~~~~l~v~nL~~~~vt~~~L~~lF~~yG~V~~vki~~~~--~g~afV~f~~~~~A~~Ai~~lng~~l~g~~l~v~~s~  349 (481)
T TIGR01649       274 PGSVLMVSGLHQEKVNCDRLFNLFCVYGNVERVKFMKNK--KETALIEMADPYQAQLALTHLNGVKLFGKPLRVCPSK  349 (481)
T ss_pred             CCCEEEEeCCCCCCCCHHHHHHHHHhcCCeEEEEEEeCC--CCEEEEEECCHHHHHHHHHHhCCCEECCceEEEEEcc
Confidence            347999999998 69999999999999999999998763  479999999999999995 799999999999998763

Included in this family of heterogeneous ribonucleoproteins are PTB (polypyrimidine tract binding protein ) and hnRNP-L. These proteins contain four RNA recognition motifs (rrm: pfam00067).

>TIGR01648 hnRNP-R-Q heterogeneous nuclear ribonucleoprotein R, Q family

Probab=99.13  E-value=2.4e-10  Score=112.98  Aligned_cols=72  Identities=24%  Similarity=0.225  Sum_probs=66.0

Q ss_pred             CcEEEEeCCCCCCCHHHHHHHhccC--CCceEEEEeecCCcCceEEEEecCHHHHHHHH-hcCCCeecCeeEEEEecCCC
Q 026156            5 GYVAEVVGLSPNATEKDIHEFFSHC--GDPVHVEIIRSGECGGTAYVTFSNAYALETAV-LLSGATIVDQPVCIIRWGEY   81 (242)
Q Consensus         5 ~~tV~VsNLs~~~TE~dLrefFs~~--G~I~~V~l~~~~~~~~~AfV~F~~~~aA~tAl-~Lng~~l~g~~I~V~~a~~~   81 (242)
                      .++|||+||+++++|++|+++|+.|  |+|++|++++     .+|||+|+++++|++|+ .|||.+|+|+.|+|..+.+.
T Consensus       233 ~k~LfVgNL~~~~tee~L~~~F~~f~~G~I~rV~~~r-----gfAFVeF~s~e~A~kAi~~lnG~~i~Gr~I~V~~Akp~  307 (578)
T TIGR01648       233 VKILYVRNLMTTTTEEIIEKSFSEFKPGKVERVKKIR-----DYAFVHFEDREDAVKAMDELNGKELEGSEIEVTLAKPV  307 (578)
T ss_pred             ccEEEEeCCCCCCCHHHHHHHHHhcCCCceEEEEeec-----CeEEEEeCCHHHHHHHHHHhCCCEECCEEEEEEEccCC
Confidence            4789999999999999999999999  9999998874     49999999999999995 79999999999999977543

Sequences in this subfamily include the human heterogeneous nuclear ribonucleoproteins (hnRNP) R, Q and APOBEC-1 complementation factor (aka APOBEC-1 stimulating protein). These proteins contain three RNA recognition domains (rrm: pfam00076) and a somewhat variable C-terminal domain.

>TIGR01649 hnRNP-L_PTB hnRNP-L/PTB/hephaestus splicing factor family

Probab=99.09  E-value=3.8e-10  Score=109.15  Aligned_cols=71  Identities=21%  Similarity=0.160  Sum_probs=65.0

Q ss_pred             cEEEEeCCCCCCCHHHHHHHhccCCCceEEEEeecCCcCceEEEEecCHHHHHHHHh---cCCCeecCeeEEEEecC
Q 026156            6 YVAEVVGLSPNATEKDIHEFFSHCGDPVHVEIIRSGECGGTAYVTFSNAYALETAVL---LSGATIVDQPVCIIRWG   79 (242)
Q Consensus         6 ~tV~VsNLs~~~TE~dLrefFs~~G~I~~V~l~~~~~~~~~AfV~F~~~~aA~tAl~---Lng~~l~g~~I~V~~a~   79 (242)
                      ++|||+|||+.++|++|+++|+.||+|.+|.++++   .++|||+|+++++|+.|+.   +|+..|.|++|.|..+.
T Consensus         3 ~vv~V~nLp~~~te~~L~~~f~~fG~V~~v~i~~~---k~~afVef~~~e~A~~Ai~~~~~~~~~l~g~~l~v~~s~   76 (481)
T TIGR01649         3 PVVHVRNLPQDVVEADLVEALIPFGPVSYVMMLPG---KRQALVEFEDEESAKACVNFATSVPIYIRGQPAFFNYST   76 (481)
T ss_pred             cEEEEcCCCCCCCHHHHHHHHHhcCCeeEEEEECC---CCEEEEEeCchHHHHHHHHHhhcCCceEcCeEEEEEecC
Confidence            69999999999999999999999999999999864   3699999999999999963   68999999999998664

Included in this family of heterogeneous ribonucleoproteins are PTB (polypyrimidine tract binding protein ) and hnRNP-L. These proteins contain four RNA recognition motifs (rrm: pfam00067).

>TIGR01642 U2AF_lg U2 snRNP auxilliary factor, large subunit, splicing factor

Probab=99.09  E-value=4.1e-10  Score=108.24  Aligned_cols=76  Identities=20%  Similarity=0.232  Sum_probs=64.6

Q ss_pred             CCcEEEEeCCCCCCCHHHHHHHhccC------------CCceEEEEeecCCcCceEEEEecCHHHHHHHHhcCCCeecCe
Q 026156            4 GGYVAEVVGLSPNATEKDIHEFFSHC------------GDPVHVEIIRSGECGGTAYVTFSNAYALETAVLLSGATIVDQ   71 (242)
Q Consensus         4 ~~~tV~VsNLs~~~TE~dLrefFs~~------------G~I~~V~l~~~~~~~~~AfV~F~~~~aA~tAl~Lng~~l~g~   71 (242)
                      ..++|||+|||+.+|+++|++||+.|            +.|..+.+..+   .+||||+|.+++.|..|+.|||..|.|+
T Consensus       174 ~~r~lyVgnLp~~~t~~~l~~~F~~~~~~~~~~~~~~~~~v~~~~~~~~---kg~afVeF~~~e~A~~Al~l~g~~~~g~  250 (509)
T TIGR01642       174 QARRLYVGGIPPEFVEEAVVDFFNDLMIATGYHKAEDGKHVSSVNINKE---KNFAFLEFRTVEEATFAMALDSIIYSNV  250 (509)
T ss_pred             cccEEEEeCCCCCCCHHHHHHHHHHHHHhcCCCCCCCCCceEEEEECCC---CCEEEEEeCCHHHHhhhhcCCCeEeeCc
Confidence            45799999999999999999999864            45556655433   4699999999999999999999999999


Q ss_pred             eEEEEecCCCC
Q 026156           72 PVCIIRWGEYT   82 (242)
Q Consensus        72 ~I~V~~a~~~~   82 (242)
                      .|.|.+..++.
T Consensus       251 ~l~v~r~~~~~  261 (509)
T TIGR01642       251 FLKIRRPHDYI  261 (509)
T ss_pred             eeEecCccccC
Confidence            99998766654

Members of this subfamily are found in plants, metazoa and fungi.

>KOG0126 consensus Predicted RNA-binding protein (RRM superfamily) [General function prediction only]

Probab=99.07  E-value=4.3e-11  Score=102.36  Aligned_cols=84  Identities=24%  Similarity=0.347  Sum_probs=75.6

Q ss_pred             CCCCCcEEEEeCCCCCCCHHHHHHHhccCCCceEEEEeecCCc---CceEEEEecCHHHHHHH-HhcCCCeecCeeEEEE
Q 026156            1 MYAGGYVAEVVGLSPNATEKDIHEFFSHCGDPVHVEIIRSGEC---GGTAYVTFSNAYALETA-VLLSGATIVDQPVCII   76 (242)
Q Consensus         1 M~~~~~tV~VsNLs~~~TE~dLrefFs~~G~I~~V~l~~~~~~---~~~AfV~F~~~~aA~tA-l~Lng~~l~g~~I~V~   76 (242)
                      ||.+..-|||+|||+..||.||--.||+||.|.+|.|++|..+   .+|||..|+|..+---| -.|||..|.|+.|+|.
T Consensus        31 ~YkdsA~Iyiggl~~~LtEgDil~VFSqyGe~vdinLiRDk~TGKSKGFaFLcYEDQRSTILAVDN~NGiki~gRtirVD  110 (219)
T KOG0126|consen   31 EYKDSAYIYIGGLPYELTEGDILCVFSQYGEIVDINLIRDKKTGKSKGFAFLCYEDQRSTILAVDNLNGIKILGRTIRVD  110 (219)
T ss_pred             hcccceEEEECCCcccccCCcEEEEeeccCceEEEEEEecCCCCcccceEEEEecCccceEEEEeccCCceecceeEEee
Confidence            3555678999999999999999999999999999999998653   47999999999998888 5999999999999999


Q ss_pred             ecCCCCCC
Q 026156           77 RWGEYTDE   84 (242)
Q Consensus        77 ~a~~~~~~   84 (242)
                      +...|..|
T Consensus       111 Hv~~Yk~p  118 (219)
T KOG0126|consen  111 HVSNYKKP  118 (219)
T ss_pred             ecccccCC
Confidence            99888765

>KOG0113 consensus U1 small nuclear ribonucleoprotein (RRM superfamily) [RNA processing and modification]

Probab=99.05  E-value=6.4e-10  Score=101.07  Aligned_cols=73  Identities=15%  Similarity=0.221  Sum_probs=67.4

Q ss_pred             cEEEEeCCCCCCCHHHHHHHhccCCCceEEEEeecCC---cCceEEEEecCHHHHHHH-HhcCCCeecCeeEEEEec
Q 026156            6 YVAEVVGLSPNATEKDIHEFFSHCGDPVHVEIIRSGE---CGGTAYVTFSNAYALETA-VLLSGATIVDQPVCIIRW   78 (242)
Q Consensus         6 ~tV~VsNLs~~~TE~dLrefFs~~G~I~~V~l~~~~~---~~~~AfV~F~~~~aA~tA-l~Lng~~l~g~~I~V~~a   78 (242)
                      +|+||+-|+..++|.+|++.|++||+|+.|.|+.+..   +.+||||+|+++.+...| ...+|..|+|+.|.|..-
T Consensus       102 ~TLFv~RLnydT~EskLrreF~~YG~IkrirlV~d~vTgkskGYAFIeye~erdm~~AYK~adG~~Idgrri~VDvE  178 (335)
T KOG0113|consen  102 KTLFVARLNYDTSESKLRREFEKYGPIKRIRLVRDKVTGKSKGYAFIEYEHERDMKAAYKDADGIKIDGRRILVDVE  178 (335)
T ss_pred             ceeeeeeccccccHHHHHHHHHhcCcceeEEEeeecccCCccceEEEEeccHHHHHHHHHhccCceecCcEEEEEec
Confidence            6999999999999999999999999999999998843   347999999999999999 799999999999999743

>TIGR01648 hnRNP-R-Q heterogeneous nuclear ribonucleoprotein R, Q family

Probab=99.03  E-value=7.4e-10  Score=109.58  Aligned_cols=74  Identities=19%  Similarity=0.219  Sum_probs=64.6

Q ss_pred             CcEEEEeCCCCCCCHHHHHHHhccCCCceEEEEeecC--CcCceEEEEecCHHHHHHH-HhcCCCeec-CeeEEEEec
Q 026156            5 GYVAEVVGLSPNATEKDIHEFFSHCGDPVHVEIIRSG--ECGGTAYVTFSNAYALETA-VLLSGATIV-DQPVCIIRW   78 (242)
Q Consensus         5 ~~tV~VsNLs~~~TE~dLrefFs~~G~I~~V~l~~~~--~~~~~AfV~F~~~~aA~tA-l~Lng~~l~-g~~I~V~~a   78 (242)
                      .++|||+|||++++|++|+++|+.||.|.+|+|+++.  ...+||||+|.++++|+.| ..|||..|. |+.|.|...
T Consensus        58 ~~~lFVgnLp~~~tEd~L~~~F~~~G~I~~vrl~~D~sG~sRGfaFV~F~~~e~A~~Ai~~lng~~i~~Gr~l~V~~S  135 (578)
T TIGR01648        58 GCEVFVGKIPRDLYEDELVPLFEKAGPIYELRLMMDFSGQNRGYAFVTFCGKEEAKEAVKLLNNYEIRPGRLLGVCIS  135 (578)
T ss_pred             CCEEEeCCCCCCCCHHHHHHHHHhhCCEEEEEEEECCCCCccceEEEEeCCHHHHHHHHHHcCCCeecCCcccccccc
Confidence            4799999999999999999999999999999999873  2347999999999999999 589999985 777777543

Sequences in this subfamily include the human heterogeneous nuclear ribonucleoproteins (hnRNP) R, Q and APOBEC-1 complementation factor (aka APOBEC-1 stimulating protein). These proteins contain three RNA recognition domains (rrm: pfam00076) and a somewhat variable C-terminal domain.

>KOG0122 consensus Translation initiation factor 3, subunit g (eIF-3g) [Translation, ribosomal structure and biogenesis]

Probab=99.03  E-value=1.2e-09  Score=97.02  Aligned_cols=74  Identities=26%  Similarity=0.274  Sum_probs=68.2

Q ss_pred             CcEEEEeCCCCCCCHHHHHHHhccCCCceEEEEeecCCc---CceEEEEecCHHHHHHH-HhcCCCeecCeeEEEEec
Q 026156            5 GYVAEVVGLSPNATEKDIHEFFSHCGDPVHVEIIRSGEC---GGTAYVTFSNAYALETA-VLLSGATIVDQPVCIIRW   78 (242)
Q Consensus         5 ~~tV~VsNLs~~~TE~dLrefFs~~G~I~~V~l~~~~~~---~~~AfV~F~~~~aA~tA-l~Lng~~l~g~~I~V~~a   78 (242)
                      .++|.|+|||.+++|.+|+++|-.||.|..|.|.++.++   .+||||+|.+.+.|..| -.|||.-++.-.|+|.-.
T Consensus       189 ~~tvRvtNLsed~~E~dL~eLf~~fg~i~rvylardK~TG~~kGFAFVtF~sRddA~rAI~~LnG~gyd~LILrvEws  266 (270)
T KOG0122|consen  189 EATVRVTNLSEDMREDDLEELFRPFGPITRVYLARDKETGLSKGFAFVTFESRDDAARAIADLNGYGYDNLILRVEWS  266 (270)
T ss_pred             cceeEEecCccccChhHHHHHhhccCccceeEEEEccccCcccceEEEEEecHHHHHHHHHHccCcccceEEEEEEec
Confidence            468999999999999999999999999999999998664   47999999999999999 599999999999999844

>PF13893 RRM_5: RNA recognition motif

Probab=98.99  E-value=2.7e-09  Score=73.44  Aligned_cols=54  Identities=22%  Similarity=0.417  Sum_probs=48.2

Q ss_pred             HHHHhccCCCceEEEEeecCCcCceEEEEecCHHHHHHH-HhcCCCeecCeeEEEEe
Q 026156           22 IHEFFSHCGDPVHVEIIRSGECGGTAYVTFSNAYALETA-VLLSGATIVDQPVCIIR   77 (242)
Q Consensus        22 LrefFs~~G~I~~V~l~~~~~~~~~AfV~F~~~~aA~tA-l~Lng~~l~g~~I~V~~   77 (242)
                      |+++|+.||+|.+|.+.+..  .++|||+|.++++|+.| ..|||..+.|++|+|..
T Consensus         1 L~~~f~~fG~V~~i~~~~~~--~~~a~V~f~~~~~A~~a~~~l~~~~~~g~~l~V~~   55 (56)
T PF13893_consen    1 LYKLFSKFGEVKKIKIFKKK--RGFAFVEFASVEDAQKAIEQLNGRQFNGRPLKVSY   55 (56)
T ss_dssp             HHHHHTTTS-EEEEEEETTS--TTEEEEEESSHHHHHHHHHHHTTSEETTEEEEEEE
T ss_pred             ChHHhCCcccEEEEEEEeCC--CCEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEE
Confidence            68999999999999998655  47999999999999999 57999999999999974

(a.k.a. RRM, RBD, or RNP domain); PDB: 2PE8_A 2PEH_A 2D9O_A 1A9N_D 2DIT_A 3S6E_A 2LQ5_A 1SJQ_A 2AD9_A 1X4D_A ....

>KOG0117 consensus Heterogeneous nuclear ribonucleoprotein R (RRM superfamily) [RNA processing and modification]

Probab=98.94  E-value=1.4e-09  Score=103.12  Aligned_cols=75  Identities=20%  Similarity=0.206  Sum_probs=68.7

Q ss_pred             CCcEEEEeCCCCCCCHHHHHHHhccCCCceEEEEeecCCcCceEEEEecCHHHHHHH-HhcCCCeecCeeEEEEecCCCC
Q 026156            4 GGYVAEVVGLSPNATEKDIHEFFSHCGDPVHVEIIRSGECGGTAYVTFSNAYALETA-VLLSGATIVDQPVCIIRWGEYT   82 (242)
Q Consensus         4 ~~~tV~VsNLs~~~TE~dLrefFs~~G~I~~V~l~~~~~~~~~AfV~F~~~~aA~tA-l~Lng~~l~g~~I~V~~a~~~~   82 (242)
                      ....+||.||+.++||+.|++.|+.||+|+.|+.++|     ||||+|.+.++|.+| ..+||.+|+|..|.|+.+.+..
T Consensus       258 ~VKvLYVRNL~~~tTeE~lk~~F~~~G~veRVkk~rD-----YaFVHf~eR~davkAm~~~ngkeldG~~iEvtLAKP~~  332 (506)
T KOG0117|consen  258 KVKVLYVRNLMESTTEETLKKLFNEFGKVERVKKPRD-----YAFVHFAEREDAVKAMKETNGKELDGSPIEVTLAKPVD  332 (506)
T ss_pred             heeeeeeeccchhhhHHHHHHHHHhccceEEeecccc-----eeEEeecchHHHHHHHHHhcCceecCceEEEEecCChh
Confidence            4567999999999999999999999999999998865     999999999999999 6999999999999999886544


Q ss_pred             C
Q 026156           83 D   83 (242)
Q Consensus        83 ~   83 (242)
                      .
T Consensus       333 k  333 (506)
T KOG0117|consen  333 K  333 (506)
T ss_pred             h
Confidence            3

>KOG0108 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA15 [RNA processing and modification]

Probab=98.92  E-value=3.1e-09  Score=101.98  Aligned_cols=82  Identities=17%  Similarity=0.199  Sum_probs=73.1

Q ss_pred             CCCCC-cEEEEeCCCCCCCHHHHHHHhccCCCceEEEEeecCCc---CceEEEEecCHHHHHHH-HhcCCCeecCeeEEE
Q 026156            1 MYAGG-YVAEVVGLSPNATEKDIHEFFSHCGDPVHVEIIRSGEC---GGTAYVTFSNAYALETA-VLLSGATIVDQPVCI   75 (242)
Q Consensus         1 M~~~~-~tV~VsNLs~~~TE~dLrefFs~~G~I~~V~l~~~~~~---~~~AfV~F~~~~aA~tA-l~Lng~~l~g~~I~V   75 (242)
                      |++.. +.|||+||++.++|++|.++|+..|.|.++++..|+++   ++|+|++|.+++.+..| -.|||.++.|++|+|
T Consensus        13 ~~~~~~~~v~vgnip~~~se~~l~~~~~~~g~v~s~~~v~D~~tG~~~G~~f~~~~~~~~~~~a~~~lNg~~~~gr~l~v   92 (435)
T KOG0108|consen   13 NSPGLSSSVFVGNIPYEGSEEQLLSIFSGVGPVLSFRLVYDRETGKPKGFGFCEFTDEETAERAIRNLNGAEFNGRKLRV   92 (435)
T ss_pred             cCcccccceEecCCCCcccHHHHHHHHhccCccceeeecccccCCCcCceeeEecCchhhHHHHHHhcCCcccCCceEEe
Confidence            45555 89999999999999999999999999999999987553   47999999999999999 699999999999999


Q ss_pred             EecCCCC
Q 026156           76 IRWGEYT   82 (242)
Q Consensus        76 ~~a~~~~   82 (242)
                      .......
T Consensus        93 ~~~~~~~   99 (435)
T KOG0108|consen   93 NYASNRK   99 (435)
T ss_pred             ecccccc
Confidence            8765544

>KOG0415 consensus Predicted peptidyl prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]

Probab=98.91  E-value=2.2e-09  Score=99.75  Aligned_cols=78  Identities=26%  Similarity=0.303  Sum_probs=70.7

Q ss_pred             CCCCCcEEEEeCCCCCCCHHHHHHHhccCCCceEEEEeecCCc---CceEEEEecCHHHHHHH-HhcCCCeecCeeEEEE
Q 026156            1 MYAGGYVAEVVGLSPNATEKDIHEFFSHCGDPVHVEIIRSGEC---GGTAYVTFSNAYALETA-VLLSGATIVDQPVCII   76 (242)
Q Consensus         1 M~~~~~tV~VsNLs~~~TE~dLrefFs~~G~I~~V~l~~~~~~---~~~AfV~F~~~~aA~tA-l~Lng~~l~g~~I~V~   76 (242)
                      |-|-+..+||.-|.|-+|++||.-+||.||+|.+|+++++..+   -++|||+|++.++++.| ..|++..|++++|+|.
T Consensus       235 ~~PPeNVLFVCKLNPVTtDeDLeiIFSrFG~i~sceVIRD~ktgdsLqyaFiEFen~escE~AyFKMdNvLIDDrRIHVD  314 (479)
T KOG0415|consen  235 VKPPENVLFVCKLNPVTTDEDLEIIFSRFGKIVSCEVIRDRKTGDSLQYAFIEFENKESCEQAYFKMDNVLIDDRRIHVD  314 (479)
T ss_pred             cCCCcceEEEEecCCcccccchhhHHhhcccceeeeEEecccccchhheeeeeecchhhHHHHHhhhcceeeccceEEee
Confidence            3455689999999999999999999999999999999998543   37999999999999999 8999999999999997


Q ss_pred             ec
Q 026156           77 RW   78 (242)
Q Consensus        77 ~a   78 (242)
                      ..
T Consensus       315 FS  316 (479)
T KOG0415|consen  315 FS  316 (479)
T ss_pred             hh
Confidence            43

>KOG4207 consensus Predicted splicing factor, SR protein superfamily [RNA processing and modification]

Probab=98.89  E-value=2.6e-09  Score=93.18  Aligned_cols=74  Identities=22%  Similarity=0.230  Sum_probs=67.6

Q ss_pred             CcEEEEeCCCCCCCHHHHHHHhccCCCceEEEEeecCC---cCceEEEEecCHHHHHHH-HhcCCCeecCeeEEEEec
Q 026156            5 GYVAEVVGLSPNATEKDIHEFFSHCGDPVHVEIIRSGE---CGGTAYVTFSNAYALETA-VLLSGATIVDQPVCIIRW   78 (242)
Q Consensus         5 ~~tV~VsNLs~~~TE~dLrefFs~~G~I~~V~l~~~~~---~~~~AfV~F~~~~aA~tA-l~Lng~~l~g~~I~V~~a   78 (242)
                      -.+|.|-||.+.++.++|+..|.+||.|-+|-|.+|.-   ..+||||-|.+..+|+.| -.|+|.+|+|+.|.|+.+
T Consensus        13 m~SLkVdNLTyRTspd~LrrvFekYG~vgDVyIPrdr~Tr~sRgFaFVrf~~k~daedA~damDG~~ldgRelrVq~a   90 (256)
T KOG4207|consen   13 MTSLKVDNLTYRTSPDDLRRVFEKYGRVGDVYIPRDRYTRQSRGFAFVRFHDKRDAEDALDAMDGAVLDGRELRVQMA   90 (256)
T ss_pred             ceeEEecceeccCCHHHHHHHHHHhCcccceecccccccccccceeEEEeeecchHHHHHHhhcceeeccceeeehhh
Confidence            36899999999999999999999999999999998843   457999999999999999 599999999999988754

>KOG0131 consensus Splicing factor 3b, subunit 4 [RNA processing and modification]

Probab=98.83  E-value=3.9e-09  Score=90.27  Aligned_cols=78  Identities=17%  Similarity=0.227  Sum_probs=70.8

Q ss_pred             CCcEEEEeCCCCCCCHHHHHHHhccCCCceEEEEeecCC---cCceEEEEecCHHHHHHH-HhcCCCeecCeeEEEEecC
Q 026156            4 GGYVAEVVGLSPNATEKDIHEFFSHCGDPVHVEIIRSGE---CGGTAYVTFSNAYALETA-VLLSGATIVDQPVCIIRWG   79 (242)
Q Consensus         4 ~~~tV~VsNLs~~~TE~dLrefFs~~G~I~~V~l~~~~~---~~~~AfV~F~~~~aA~tA-l~Lng~~l~g~~I~V~~a~   79 (242)
                      ...||||+||++.++++-|.|+|-++|+|.+|.+.++..   ..+|||++|.+++.++-| ..||...|.|++|+|..++
T Consensus         8 qd~tiyvgnld~kvs~~~l~EL~iqagpVv~i~iPkDrv~~~~qGygF~Ef~~eedadYAikiln~VkLYgrpIrv~kas   87 (203)
T KOG0131|consen    8 QDATLYVGNLDEKVSEELLYELFIQAGPVVNLHIPKDRVTQKHQGYGFAEFRTEEDADYAIKILNMVKLYGRPIRVNKAS   87 (203)
T ss_pred             CCceEEEecCCHHHHHHHHHHHHHhcCceeeeecchhhhcccccceeEEEEechhhhHHHHHHHHHHHhcCceeEEEecc
Confidence            357999999999999999999999999999999998754   347999999999999999 6899999999999999887


Q ss_pred             CC
Q 026156           80 EY   81 (242)
Q Consensus        80 ~~   81 (242)
                      ..
T Consensus        88 ~~   89 (203)
T KOG0131|consen   88 AH   89 (203)
T ss_pred             cc
Confidence            43

>KOG0123 consensus Polyadenylate-binding protein (RRM superfamily) [RNA processing and modification; Translation, ribosomal structure and biogenesis]

Probab=98.82  E-value=9.1e-09  Score=97.07  Aligned_cols=77  Identities=14%  Similarity=0.258  Sum_probs=68.3

Q ss_pred             cEEEEeCCCCCCCHHHHHHHhccCCCceEEEEeecCC-cCceEEEEecCHHHHHHH-HhcCCCeecCeeEEEEecCCCCC
Q 026156            6 YVAEVVGLSPNATEKDIHEFFSHCGDPVHVEIIRSGE-CGGTAYVTFSNAYALETA-VLLSGATIVDQPVCIIRWGEYTD   83 (242)
Q Consensus         6 ~tV~VsNLs~~~TE~dLrefFs~~G~I~~V~l~~~~~-~~~~AfV~F~~~~aA~tA-l~Lng~~l~g~~I~V~~a~~~~~   83 (242)
                      ..|||.||++.++.++|.++|+.||+|.+|++..+.+ .+++ ||+|+++++|.+| -.+||..+.|+.|.|.+..+-..
T Consensus        77 ~~~~i~nl~~~~~~~~~~d~f~~~g~ilS~kv~~~~~g~kg~-FV~f~~e~~a~~ai~~~ng~ll~~kki~vg~~~~~~e  155 (369)
T KOG0123|consen   77 SLVFIKNLDESIDNKSLYDTFSEFGNILSCKVATDENGSKGY-FVQFESEESAKKAIEKLNGMLLNGKKIYVGLFERKEE  155 (369)
T ss_pred             ceeeecCCCcccCcHHHHHHHHhhcCeeEEEEEEcCCCceee-EEEeCCHHHHHHHHHHhcCcccCCCeeEEeeccchhh
Confidence            4599999999999999999999999999999997744 4567 9999999999999 69999999999999987755433

>KOG0153 consensus Predicted RNA-binding protein (RRM superfamily) [General function prediction only]

Probab=98.78  E-value=1.5e-08  Score=93.70  Aligned_cols=72  Identities=28%  Similarity=0.401  Sum_probs=66.0

Q ss_pred             cEEEEeCCCCCCCHHHHHHHhccCCCceEEEEeecCCcCceEEEEecCHHHHHHH--HhcCCCeecCeeEEEEecCCC
Q 026156            6 YVAEVVGLSPNATEKDIHEFFSHCGDPVHVEIIRSGECGGTAYVTFSNAYALETA--VLLSGATIVDQPVCIIRWGEY   81 (242)
Q Consensus         6 ~tV~VsNLs~~~TE~dLrefFs~~G~I~~V~l~~~~~~~~~AfV~F~~~~aA~tA--l~Lng~~l~g~~I~V~~a~~~   81 (242)
                      .|+||+||.+.++|.+|+++|.+||+|++|.+...   .+.|||+|....+|+.|  ..+|...|+|++|.|. |+..
T Consensus       229 ~tLyIg~l~d~v~e~dIrdhFyqyGeirsi~~~~~---~~CAFv~ftTR~aAE~Aae~~~n~lvI~G~Rl~i~-Wg~~  302 (377)
T KOG0153|consen  229 KTLYIGGLNDEVLEQDIRDHFYQYGEIRSIRILPR---KGCAFVTFTTREAAEKAAEKSFNKLVINGFRLKIK-WGRP  302 (377)
T ss_pred             eEEEecccccchhHHHHHHHHhhcCCeeeEEeecc---cccceeeehhhHHHHHHHHhhcceeeecceEEEEE-eCCC
Confidence            68999999999999999999999999999999854   35899999999999999  5889889999999999 8765

>smart00361 RRM_1 RNA recognition motif

Probab=98.78  E-value=2.6e-08  Score=71.96  Aligned_cols=57  Identities=25%  Similarity=0.324  Sum_probs=49.0

Q ss_pred             HHHHHHHhc----cCCCceEEE-EeecC-----CcCceEEEEecCHHHHHHH-HhcCCCeecCeeEEE
Q 026156           19 EKDIHEFFS----HCGDPVHVE-IIRSG-----ECGGTAYVTFSNAYALETA-VLLSGATIVDQPVCI   75 (242)
Q Consensus        19 E~dLrefFs----~~G~I~~V~-l~~~~-----~~~~~AfV~F~~~~aA~tA-l~Lng~~l~g~~I~V   75 (242)
                      +++|+++|+    .||.|.+|. +..+.     ...+++||+|.++++|..| ..|||..+.|+.|.+
T Consensus         2 ~~~l~~~~~~~~~~fG~v~~v~~v~~~~~~~~~~~rG~~fV~f~~~~dA~~A~~~l~g~~~~gr~l~~   69 (70)
T smart00361        2 DEDFEREFSEEEEYFGEVGKINKIYIDNVGYENHKRGNVYITFERSEDAARAIVDLNGRYFDGRTVKA   69 (70)
T ss_pred             chhHHHHHHHHHHhcCCeeEEEEEEeCCCCCCCCCcEEEEEEECCHHHHHHHHHHhCCCEECCEEEEe
Confidence            689999999    999999995 54432     2357999999999999999 689999999999986

>KOG0130 consensus RNA-binding protein RBM8/Tsunagi (RRM superfamily) [General function prediction only]

Probab=98.76  E-value=1.3e-08  Score=83.67  Aligned_cols=74  Identities=27%  Similarity=0.413  Sum_probs=66.9

Q ss_pred             CcEEEEeCCCCCCCHHHHHHHhccCCCceEEEEeecCCc---CceEEEEecCHHHHHHH-HhcCCCeecCeeEEEEec
Q 026156            5 GYVAEVVGLSPNATEKDIHEFFSHCGDPVHVEIIRSGEC---GGTAYVTFSNAYALETA-VLLSGATIVDQPVCIIRW   78 (242)
Q Consensus         5 ~~tV~VsNLs~~~TE~dLrefFs~~G~I~~V~l~~~~~~---~~~AfV~F~~~~aA~tA-l~Lng~~l~g~~I~V~~a   78 (242)
                      +..|||+|+.+.+||++|.+.|+.||+|+.|.|.-+..+   ++||.|+|+....|+.| -.|||..|.|+.|.|.-+
T Consensus        72 GwIi~VtgvHeEatEedi~d~F~dyGeiKNihLNLDRRtGy~KGYaLvEYet~keAq~A~~~~Ng~~ll~q~v~VDw~  149 (170)
T KOG0130|consen   72 GWIIFVTGVHEEATEEDIHDKFADYGEIKNIHLNLDRRTGYVKGYALVEYETLKEAQAAIDALNGAELLGQNVSVDWC  149 (170)
T ss_pred             eEEEEEeccCcchhHHHHHHHHhhcccccceeeccccccccccceeeeehHhHHHHHHHHHhccchhhhCCceeEEEE
Confidence            357999999999999999999999999999999866443   47999999999999999 699999999999999854

>KOG0145 consensus RNA-binding protein ELAV/HU (RRM superfamily) [RNA processing and modification]

Probab=98.72  E-value=7.2e-08  Score=86.77  Aligned_cols=76  Identities=29%  Similarity=0.417  Sum_probs=69.5

Q ss_pred             CCcEEEEeCCCCCCCHHHHHHHhccCCCceEEEEeecCC---cCceEEEEecCHHHHHHH-HhcCCCeecCeeEEEEecC
Q 026156            4 GGYVAEVVGLSPNATEKDIHEFFSHCGDPVHVEIIRSGE---CGGTAYVTFSNAYALETA-VLLSGATIVDQPVCIIRWG   79 (242)
Q Consensus         4 ~~~tV~VsNLs~~~TE~dLrefFs~~G~I~~V~l~~~~~---~~~~AfV~F~~~~aA~tA-l~Lng~~l~g~~I~V~~a~   79 (242)
                      ++.+|||=||+|++.|.-|-.+|+.||-|.+|++++|-.   +++|+||+..+.++|-.| ..|||..|+++.+.|..-.
T Consensus       277 ~g~ciFvYNLspd~de~~LWQlFgpFGAv~nVKvirD~ttnkCKGfgFVtMtNYdEAamAi~sLNGy~lg~rvLQVsFKt  356 (360)
T KOG0145|consen  277 GGWCIFVYNLSPDADESILWQLFGPFGAVTNVKVIRDFTTNKCKGFGFVTMTNYDEAAMAIASLNGYRLGDRVLQVSFKT  356 (360)
T ss_pred             CeeEEEEEecCCCchHhHHHHHhCcccceeeEEEEecCCcccccceeEEEecchHHHHHHHHHhcCccccceEEEEEEec
Confidence            357899999999999999999999999999999999843   567999999999999999 7999999999999998543

>KOG0127 consensus Nucleolar protein fibrillarin NOP77 (RRM superfamily) [RNA processing and modification]

Probab=98.71  E-value=2.7e-08  Score=96.57  Aligned_cols=80  Identities=19%  Similarity=0.204  Sum_probs=71.6

Q ss_pred             CCCCcEEEEeCCCCCCCHHHHHHHhccCCCceEEEEeecCCc---CceEEEEecCHHHHHHH-HhcCCCeecCeeEEEEe
Q 026156            2 YAGGYVAEVVGLSPNATEKDIHEFFSHCGDPVHVEIIRSGEC---GGTAYVTFSNAYALETA-VLLSGATIVDQPVCIIR   77 (242)
Q Consensus         2 ~~~~~tV~VsNLs~~~TE~dLrefFs~~G~I~~V~l~~~~~~---~~~AfV~F~~~~aA~tA-l~Lng~~l~g~~I~V~~   77 (242)
                      ...+.||||++||++++.++|.+|||.+|+|.++-+..++++   .+|+||+|.-.++++.| -.+++..+.|+.|+|.+
T Consensus         2 n~~g~TlfV~~lp~~~~~~qL~e~FS~vGPik~~~vVt~~gs~~~RGfgfVtFam~ED~qrA~~e~~~~kf~Gr~l~v~~   81 (678)
T KOG0127|consen    2 NKSGATLFVSRLPFSSTGEQLEEFFSYVGPIKHAVVVTNKGSSEKRGFGFVTFAMEEDVQRALAETEQSKFEGRILNVDP   81 (678)
T ss_pred             CCCCceEEEecCCCccchhHHHHhhhcccCcceeEEecCCCcccccCccceeeehHhHHHHHHHHhhcCcccceeccccc
Confidence            344589999999999999999999999999999999987654   47999999999999999 58899999999999998


Q ss_pred             cCCC
Q 026156           78 WGEY   81 (242)
Q Consensus        78 a~~~   81 (242)
                      +...
T Consensus        82 A~~R   85 (678)
T KOG0127|consen   82 AKKR   85 (678)
T ss_pred             cccc
Confidence            7543

>KOG0109 consensus RNA-binding protein LARK, contains RRM and retroviral-type Zn-finger domains [RNA processing and modification; General function prediction only]

Probab=98.71  E-value=2e-08  Score=91.24  Aligned_cols=70  Identities=20%  Similarity=0.304  Sum_probs=65.3

Q ss_pred             EEEEeCCCCCCCHHHHHHHhccCCCceEEEEeecCCcCceEEEEecCHHHHHHHH-hcCCCeecCeeEEEEecCCC
Q 026156            7 VAEVVGLSPNATEKDIHEFFSHCGDPVHVEIIRSGECGGTAYVTFSNAYALETAV-LLSGATIVDQPVCIIRWGEY   81 (242)
Q Consensus         7 tV~VsNLs~~~TE~dLrefFs~~G~I~~V~l~~~~~~~~~AfV~F~~~~aA~tAl-~Lng~~l~g~~I~V~~a~~~   81 (242)
                      .+||+|||.++++.+||.+|..||+|.+|+|+.     .++||+.++..+++.|+ .|+|.+|.|..|+|....+.
T Consensus         4 KLFIGNLp~~~~~~elr~lFe~ygkVlECDIvK-----NYgFVHiEdktaaedairNLhgYtLhg~nInVeaSksK   74 (346)
T KOG0109|consen    4 KLFIGNLPREATEQELRSLFEQYGKVLECDIVK-----NYGFVHIEDKTAAEDAIRNLHGYTLHGVNINVEASKSK   74 (346)
T ss_pred             chhccCCCcccchHHHHHHHHhhCceEeeeeec-----ccceEEeecccccHHHHhhcccceecceEEEEEecccc
Confidence            799999999999999999999999999999994     59999999999999995 69999999999999977654

>KOG0117 consensus Heterogeneous nuclear ribonucleoprotein R (RRM superfamily) [RNA processing and modification]

Probab=98.70  E-value=4.4e-08  Score=93.16  Aligned_cols=76  Identities=17%  Similarity=0.180  Sum_probs=66.8

Q ss_pred             CCCcEEEEeCCCCCCCHHHHHHHhccCCCceEEEEeecCC---cCceEEEEecCHHHHHHH-HhcCCCee-cCeeEEEEe
Q 026156            3 AGGYVAEVVGLSPNATEKDIHEFFSHCGDPVHVEIIRSGE---CGGTAYVTFSNAYALETA-VLLSGATI-VDQPVCIIR   77 (242)
Q Consensus         3 ~~~~tV~VsNLs~~~TE~dLrefFs~~G~I~~V~l~~~~~---~~~~AfV~F~~~~aA~tA-l~Lng~~l-~g~~I~V~~   77 (242)
                      +.++-|||+.||.++.|++|.-+|...|+|-+++|+.|+.   ..+||||+|.+.+.|+.| ..||+++| -|+.|.|+.
T Consensus        81 ~~G~EVfvGkIPrD~~EdeLvplfEkiG~I~elRLMmD~~sG~nRGYAFVtf~~Ke~Aq~Aik~lnn~Eir~GK~igvc~  160 (506)
T KOG0117|consen   81 PRGCEVFVGKIPRDVFEDELVPLFEKIGKIYELRLMMDPFSGDNRGYAFVTFCTKEEAQEAIKELNNYEIRPGKLLGVCV  160 (506)
T ss_pred             CCCceEEecCCCccccchhhHHHHHhccceeeEEEeecccCCCCcceEEEEeecHHHHHHHHHHhhCccccCCCEeEEEE
Confidence            3457899999999999999999999999999999998733   457999999999999999 69999998 478777764


Q ss_pred             c
Q 026156           78 W   78 (242)
Q Consensus        78 a   78 (242)
                      .
T Consensus       161 S  161 (506)
T KOG0117|consen  161 S  161 (506)
T ss_pred             e
Confidence            3

>KOG4211 consensus Splicing factor hnRNP-F and related RNA-binding proteins [RNA processing and modification]

Probab=98.70  E-value=4.3e-08  Score=94.08  Aligned_cols=78  Identities=29%  Similarity=0.451  Sum_probs=69.5

Q ss_pred             CCcEEEEeCCCCCCCHHHHHHHhccCCCceEEEEeecC-CcCceEEEEecCHHHHHHHHhcCCCeecCeeEEEEecCCCC
Q 026156            4 GGYVAEVVGLSPNATEKDIHEFFSHCGDPVHVEIIRSG-ECGGTAYVTFSNAYALETAVLLSGATIVDQPVCIIRWGEYT   82 (242)
Q Consensus         4 ~~~tV~VsNLs~~~TE~dLrefFs~~G~I~~V~l~~~~-~~~~~AfV~F~~~~aA~tAl~Lng~~l~g~~I~V~~a~~~~   82 (242)
                      +..-|.+.+|||++|++||++||+.|+ |+++.+.+.+ ..++-|||+|+++++++.|+.++...++.+.|.|-.+...+
T Consensus         9 ~~~~vr~rGLPwsat~~ei~~Ff~~~~-I~~~~~~r~~Gr~sGeA~Ve~~seedv~~AlkkdR~~mg~RYIEVf~~~~~e   87 (510)
T KOG4211|consen    9 TAFEVRLRGLPWSATEKEILDFFSNCG-IENLEIPRRNGRPSGEAYVEFTSEEDVEKALKKDRESMGHRYIEVFTAGGAE   87 (510)
T ss_pred             cceEEEecCCCccccHHHHHHHHhcCc-eeEEEEeccCCCcCcceEEEeechHHHHHHHHhhHHHhCCceEEEEccCCcc
Confidence            346799999999999999999999998 9999999874 45689999999999999999999999999999998775443

>KOG0111 consensus Cyclophilin-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]

Probab=98.69  E-value=1.6e-08  Score=89.05  Aligned_cols=80  Identities=23%  Similarity=0.212  Sum_probs=71.5

Q ss_pred             CCCCCcEEEEeCCCCCCCHHHHHHHhccCCCceEEEEeecCC---cCceEEEEecCHHHHHHH-HhcCCCeecCeeEEEE
Q 026156            1 MYAGGYVAEVVGLSPNATEKDIHEFFSHCGDPVHVEIIRSGE---CGGTAYVTFSNAYALETA-VLLSGATIVDQPVCII   76 (242)
Q Consensus         1 M~~~~~tV~VsNLs~~~TE~dLrefFs~~G~I~~V~l~~~~~---~~~~AfV~F~~~~aA~tA-l~Lng~~l~g~~I~V~   76 (242)
                      |....+|+||++|...++|+-|..-|-.||+|..|.+..|-+   ..+|+||+|+..++|..| -.+|+.+|.|+.|+|.
T Consensus         6 ~a~~KrtlYVGGladeVtekvLhaAFIPFGDI~dIqiPlDyesqkHRgFgFVefe~aEDAaaAiDNMnesEL~GrtirVN   85 (298)
T KOG0111|consen    6 MANQKRTLYVGGLADEVTEKVLHAAFIPFGDIKDIQIPLDYESQKHRGFGFVEFEEAEDAAAAIDNMNESELFGRTIRVN   85 (298)
T ss_pred             ccccceeEEeccchHHHHHHHHHhccccccchhhcccccchhcccccceeEEEeeccchhHHHhhcCchhhhcceeEEEe
Confidence            555678999999999999999999999999999999997643   246999999999999999 5999999999999998


Q ss_pred             ecCC
Q 026156           77 RWGE   80 (242)
Q Consensus        77 ~a~~   80 (242)
                      .+.+
T Consensus        86 ~AkP   89 (298)
T KOG0111|consen   86 LAKP   89 (298)
T ss_pred             ecCC
Confidence            7754

>KOG0127 consensus Nucleolar protein fibrillarin NOP77 (RRM superfamily) [RNA processing and modification]

Probab=98.68  E-value=4.8e-08  Score=94.91  Aligned_cols=73  Identities=25%  Similarity=0.361  Sum_probs=66.0

Q ss_pred             cEEEEeCCCCCCCHHHHHHHhccCCCceEEEEeecCC--cCceEEEEecCHHHHHHH-HhcCCCeecCeeEEEEec
Q 026156            6 YVAEVVGLSPNATEKDIHEFFSHCGDPVHVEIIRSGE--CGGTAYVTFSNAYALETA-VLLSGATIVDQPVCIIRW   78 (242)
Q Consensus         6 ~tV~VsNLs~~~TE~dLrefFs~~G~I~~V~l~~~~~--~~~~AfV~F~~~~aA~tA-l~Lng~~l~g~~I~V~~a   78 (242)
                      ..++|.|||+.|.+.+|+.+||.||.|..|.|++..+  ..+||||.|.+..+|..| ..+||..|+|++|-|.-+
T Consensus       118 ~rLIIRNLPf~~k~~dLk~vFs~~G~V~Ei~IP~k~dgklcGFaFV~fk~~~dA~~Al~~~N~~~i~gR~VAVDWA  193 (678)
T KOG0127|consen  118 WRLIIRNLPFKCKKPDLKNVFSNFGKVVEIVIPRKKDGKLCGFAFVQFKEKKDAEKALEFFNGNKIDGRPVAVDWA  193 (678)
T ss_pred             ceEEeecCCcccCcHHHHHHHhhcceEEEEEcccCCCCCccceEEEEEeeHHHHHHHHHhccCceecCceeEEeee
Confidence            4689999999999999999999999999999996544  237999999999999999 589999999999999733

>KOG0124 consensus Polypyrimidine tract-binding protein PUF60 (RRM superfamily) [RNA processing and modification]

Probab=98.67  E-value=2e-08  Score=93.86  Aligned_cols=75  Identities=17%  Similarity=0.160  Sum_probs=67.7

Q ss_pred             cEEEEeCCCCCCCHHHHHHHhccCCCceEEEEeecCC---cCceEEEEecCHHHHHHH-HhcCCCeecCeeEEEEecCC
Q 026156            6 YVAEVVGLSPNATEKDIHEFFSHCGDPVHVEIIRSGE---CGGTAYVTFSNAYALETA-VLLSGATIVDQPVCIIRWGE   80 (242)
Q Consensus         6 ~tV~VsNLs~~~TE~dLrefFs~~G~I~~V~l~~~~~---~~~~AfV~F~~~~aA~tA-l~Lng~~l~g~~I~V~~a~~   80 (242)
                      |.|||+.|++...|+.||.-|-.||+|++|.+..|.-   .++||||+|+=|+++.-| ..+||..++|+.|+|.+..+
T Consensus       114 cRvYVGSIsfEl~EDtiR~AF~PFGPIKSInMSWDp~T~kHKgFAFVEYEvPEaAqLAlEqMNg~mlGGRNiKVgrPsN  192 (544)
T KOG0124|consen  114 CRVYVGSISFELREDTIRRAFDPFGPIKSINMSWDPATGKHKGFAFVEYEVPEAAQLALEQMNGQMLGGRNIKVGRPSN  192 (544)
T ss_pred             HheeeeeeEEEechHHHHhhccCCCCcceeecccccccccccceEEEEEeCcHHHHHHHHHhccccccCccccccCCCC
Confidence            5899999999999999999999999999999987743   357999999999999999 59999999999999985433

>KOG0147 consensus Transcriptional coactivator CAPER (RRM superfamily) [Transcription]

Probab=98.63  E-value=5.1e-08  Score=94.50  Aligned_cols=80  Identities=23%  Similarity=0.268  Sum_probs=72.1

Q ss_pred             EEEeCCCCCCCHHHHHHHhccCCCceEEEEeecCC---cCceEEEEecCHHHHHHH-HhcCCCeecCeeEEEEecCCCCC
Q 026156            8 AEVVGLSPNATEKDIHEFFSHCGDPVHVEIIRSGE---CGGTAYVTFSNAYALETA-VLLSGATIVDQPVCIIRWGEYTD   83 (242)
Q Consensus         8 V~VsNLs~~~TE~dLrefFs~~G~I~~V~l~~~~~---~~~~AfV~F~~~~aA~tA-l~Lng~~l~g~~I~V~~a~~~~~   83 (242)
                      +||+||.++++|++|+..|..||+|+.|.+..+.+   +++|+||+|.+.+.+.+| ..|||-+|-|+.|.|....+..+
T Consensus       281 l~vgnLHfNite~~lr~ifepfg~Ie~v~l~~d~~tG~skgfGfi~f~~~~~ar~a~e~lngfelAGr~ikV~~v~~r~~  360 (549)
T KOG0147|consen  281 LYVGNLHFNITEDMLRGIFEPFGKIENVQLTKDSETGRSKGFGFITFVNKEDARKALEQLNGFELAGRLIKVSVVTERVD  360 (549)
T ss_pred             hhhcccccCchHHHHhhhccCcccceeeeeccccccccccCcceEEEecHHHHHHHHHHhccceecCceEEEEEeeeecc
Confidence            89999999999999999999999999999998743   568999999999999999 79999999999999998877666


Q ss_pred             CCCC
Q 026156           84 EPNP   87 (242)
Q Consensus        84 ~~~~   87 (242)
                      ....
T Consensus       361 ~~~a  364 (549)
T KOG0147|consen  361 TKEA  364 (549)
T ss_pred             cccc
Confidence            5443

>KOG4206 consensus Spliceosomal protein snRNP-U1A/U2B [RNA processing and modification]

Probab=98.59  E-value=1.4e-07  Score=82.94  Aligned_cols=77  Identities=19%  Similarity=0.325  Sum_probs=69.9

Q ss_pred             EEEEeCCCCCCCHHHHHH----HhccCCCceEEEEeecCCcCceEEEEecCHHHHHHH-HhcCCCeecCeeEEEEecCCC
Q 026156            7 VAEVVGLSPNATEKDIHE----FFSHCGDPVHVEIIRSGECGGTAYVTFSNAYALETA-VLLSGATIVDQPVCIIRWGEY   81 (242)
Q Consensus         7 tV~VsNLs~~~TE~dLre----fFs~~G~I~~V~l~~~~~~~~~AfV~F~~~~aA~tA-l~Lng~~l~g~~I~V~~a~~~   81 (242)
                      |+||.||+..+..++|++    +||.||+|.+|...+.....+-|||.|.+.++|..| -.|+|-.+.|++++|..+...
T Consensus        11 TlYInnLnekI~~~elkrsL~~LFsqfG~ildI~a~kt~KmRGQA~VvFk~~~~As~A~r~l~gfpFygK~mriqyA~s~   90 (221)
T KOG4206|consen   11 TLYINNLNEKIKKDELKRSLYLLFSQFGKILDISAFKTPKMRGQAFVVFKETEAASAALRALQGFPFYGKPMRIQYAKSD   90 (221)
T ss_pred             eEeehhccccccHHHHHHHHHHHHHhhCCeEEEEecCCCCccCceEEEecChhHHHHHHHHhcCCcccCchhheecccCc
Confidence            999999999999999999    999999999999987655568999999999999999 699999999999999987654


Q ss_pred             CC
Q 026156           82 TD   83 (242)
Q Consensus        82 ~~   83 (242)
                      .+
T Consensus        91 sd   92 (221)
T KOG4206|consen   91 SD   92 (221)
T ss_pred             cc
Confidence            43

>KOG0148 consensus Apoptosis-promoting RNA-binding protein TIA-1/TIAR (RRM superfamily) [RNA processing and modification; Translation, ribosomal structure and biogenesis]

Probab=98.58  E-value=1e-07  Score=85.95  Aligned_cols=77  Identities=21%  Similarity=0.287  Sum_probs=68.3

Q ss_pred             cEEEEeCCCCCCCHHHHHHHhccCCCceEEEEeecCC---cCceEEEEecCHHHHHHH-HhcCCCeecCeeEEEEecCCC
Q 026156            6 YVAEVVGLSPNATEKDIHEFFSHCGDPVHVEIIRSGE---CGGTAYVTFSNAYALETA-VLLSGATIVDQPVCIIRWGEY   81 (242)
Q Consensus         6 ~tV~VsNLs~~~TE~dLrefFs~~G~I~~V~l~~~~~---~~~~AfV~F~~~~aA~tA-l~Lng~~l~g~~I~V~~a~~~   81 (242)
                      .-|||+.|++.++-++||+-|..||+|.+.++++|..   +++|+||.|.+.++|+.| ..|||.=|++|.|+-.=+...
T Consensus        63 fhvfvgdls~eI~~e~lr~aF~pFGevS~akvirD~~T~KsKGYgFVSf~~k~dAEnAI~~MnGqWlG~R~IRTNWATRK  142 (321)
T KOG0148|consen   63 FHVFVGDLSPEIDNEKLREAFAPFGEVSDAKVIRDMNTGKSKGYGFVSFPNKEDAENAIQQMNGQWLGRRTIRTNWATRK  142 (321)
T ss_pred             eeEEehhcchhcchHHHHHHhccccccccceEeecccCCcccceeEEeccchHHHHHHHHHhCCeeeccceeeccccccC
Confidence            3599999999999999999999999999999999854   347999999999999999 799999999999997644443


Q ss_pred             C
Q 026156           82 T   82 (242)
Q Consensus        82 ~   82 (242)
                      +
T Consensus       143 p  143 (321)
T KOG0148|consen  143 P  143 (321)
T ss_pred             c
Confidence            3

>KOG0145 consensus RNA-binding protein ELAV/HU (RRM superfamily) [RNA processing and modification]

Probab=98.58  E-value=1.8e-07  Score=84.31  Aligned_cols=77  Identities=17%  Similarity=0.226  Sum_probs=69.4

Q ss_pred             cEEEEeCCCCCCCHHHHHHHhccCCCceEEEEeecCC---cCceEEEEecCHHHHHHH-HhcCCCeecCeeEEEEecCCC
Q 026156            6 YVAEVVGLSPNATEKDIHEFFSHCGDPVHVEIIRSGE---CGGTAYVTFSNAYALETA-VLLSGATIVDQPVCIIRWGEY   81 (242)
Q Consensus         6 ~tV~VsNLs~~~TE~dLrefFs~~G~I~~V~l~~~~~---~~~~AfV~F~~~~aA~tA-l~Lng~~l~g~~I~V~~a~~~   81 (242)
                      +.+.|.=||.+.|+++||.+|+..|+|++|+|++|+-   +-+|+||.|-++++|++| -.|||-.|..+.|+|..+.+.
T Consensus        42 TNLIvNYLPQ~MTqdE~rSLF~SiGeiEScKLvRDKitGqSLGYGFVNYv~p~DAe~AintlNGLrLQ~KTIKVSyARPS  121 (360)
T KOG0145|consen   42 TNLIVNYLPQNMTQDELRSLFGSIGEIESCKLVRDKITGQSLGYGFVNYVRPKDAEKAINTLNGLRLQNKTIKVSYARPS  121 (360)
T ss_pred             ceeeeeecccccCHHHHHHHhhcccceeeeeeeeccccccccccceeeecChHHHHHHHhhhcceeeccceEEEEeccCC
Confidence            4688889999999999999999999999999999853   347999999999999999 699999999999999977654


Q ss_pred             C
Q 026156           82 T   82 (242)
Q Consensus        82 ~   82 (242)
                      .
T Consensus       122 s  122 (360)
T KOG0145|consen  122 S  122 (360)
T ss_pred             h
Confidence            3

>KOG4676 consensus Splicing factor, arginine/serine-rich [RNA processing and modification]

Probab=98.56  E-value=9.2e-08  Score=89.86  Aligned_cols=79  Identities=22%  Similarity=0.381  Sum_probs=71.2

Q ss_pred             cEEEEeCCCCCCCHHHHHHHhccCCCceEEEEeecCC------cCceEEEEecCHHHHHHHHhcCCCeecCeeEEEEecC
Q 026156            6 YVAEVVGLSPNATEKDIHEFFSHCGDPVHVEIIRSGE------CGGTAYVTFSNAYALETAVLLSGATIVDQPVCIIRWG   79 (242)
Q Consensus         6 ~tV~VsNLs~~~TE~dLrefFs~~G~I~~V~l~~~~~------~~~~AfV~F~~~~aA~tAl~Lng~~l~g~~I~V~~a~   79 (242)
                      ..|+|.||+|++|.++++.+|.+.|+|..+.|....+      ...+|||.|.|++.+..|.+|.++.+.|+.|.|-|+.
T Consensus         8 ~vIqvanispsat~dqm~tlFg~lGkI~elrlyp~~~d~~~pv~sRtcyVkf~d~~sv~vaQhLtntvfvdraliv~p~~   87 (479)
T KOG4676|consen    8 GVIQVANISPSATKDQMQTLFGNLGKIPELRLYPNVDDSKIPVISRTCYVKFLDSQSVTVAQHLTNTVFVDRALIVRPYG   87 (479)
T ss_pred             ceeeecccCchhhHHHHHHHHhhccccccccccCCCCCccCcceeeeEEEeccCCcceeHHhhhccceeeeeeEEEEecC
Confidence            5899999999999999999999999999999986422      2369999999999999999999999999999999998


Q ss_pred             CCCCC
Q 026156           80 EYTDE   84 (242)
Q Consensus        80 ~~~~~   84 (242)
                      +.+.|
T Consensus        88 ~~~~p   92 (479)
T KOG4676|consen   88 DEVIP   92 (479)
T ss_pred             CCCCc
Confidence            76654

>KOG0144 consensus RNA-binding protein CUGBP1/BRUNO (RRM superfamily) [RNA processing and modification]

Probab=98.53  E-value=1.1e-07  Score=90.36  Aligned_cols=76  Identities=28%  Similarity=0.316  Sum_probs=65.2

Q ss_pred             CCcEEEEeCCCCCCCHHHHHHHhccCCCceEEEEeecCC--cCceEEEEecCHHHHHHH-HhcCCCe-ecC--eeEEEEe
Q 026156            4 GGYVAEVVGLSPNATEKDIHEFFSHCGDPVHVEIIRSGE--CGGTAYVTFSNAYALETA-VLLSGAT-IVD--QPVCIIR   77 (242)
Q Consensus         4 ~~~tV~VsNLs~~~TE~dLrefFs~~G~I~~V~l~~~~~--~~~~AfV~F~~~~aA~tA-l~Lng~~-l~g--~~I~V~~   77 (242)
                      .++.+||+-|+-.+||.+||++|+.||.|++|.|+++..  +.++|||+|...+-|..| ..|||.. +.|  .+|.|.-
T Consensus       123 ~e~KLFvg~lsK~~te~evr~iFs~fG~Ied~~ilrd~~~~sRGcaFV~fstke~A~~Aika~ng~~tmeGcs~PLVVkF  202 (510)
T KOG0144|consen  123 EERKLFVGMLSKQCTENEVREIFSRFGHIEDCYILRDPDGLSRGCAFVKFSTKEMAVAAIKALNGTQTMEGCSQPLVVKF  202 (510)
T ss_pred             cchhhhhhhccccccHHHHHHHHHhhCccchhhheecccccccceeEEEEehHHHHHHHHHhhccceeeccCCCceEEEe
Confidence            367899999999999999999999999999999999754  457999999999999999 6899964 554  5677765


Q ss_pred             cC
Q 026156           78 WG   79 (242)
Q Consensus        78 a~   79 (242)
                      +.
T Consensus       203 AD  204 (510)
T KOG0144|consen  203 AD  204 (510)
T ss_pred             cc
Confidence            43

>KOG4212 consensus RNA-binding protein hnRNP-M [RNA processing and modification]

Probab=98.47  E-value=4.3e-07  Score=86.59  Aligned_cols=77  Identities=13%  Similarity=0.180  Sum_probs=68.0

Q ss_pred             CCcEEEEeCCCCCCCHHHHHHHh-ccCCCceEEEEeecCC--cCceEEEEecCHHHHHHH-HhcCCCeecCeeEEEEecC
Q 026156            4 GGYVAEVVGLSPNATEKDIHEFF-SHCGDPVHVEIIRSGE--CGGTAYVTFSNAYALETA-VLLSGATIVDQPVCIIRWG   79 (242)
Q Consensus         4 ~~~tV~VsNLs~~~TE~dLrefF-s~~G~I~~V~l~~~~~--~~~~AfV~F~~~~aA~tA-l~Lng~~l~g~~I~V~~a~   79 (242)
                      ..+.|||+|||+++...+|+++| ...|+|++|+|+.|.+  ..++|.|+|++++.+++| ..||...+.|++|.|....
T Consensus        43 r~R~vfItNIpyd~rWqdLKdLvrekvGev~yveLl~D~~GK~rGcavVEFk~~E~~qKa~E~lnk~~~~GR~l~vKEd~  122 (608)
T KOG4212|consen   43 RDRSVFITNIPYDYRWQDLKDLVREKVGEVEYVELLFDESGKARGCAVVEFKDPENVQKALEKLNKYEVNGRELVVKEDH  122 (608)
T ss_pred             ccceEEEecCcchhhhHhHHHHHHHhcCceEeeeeecccCCCcCCceEEEeeCHHHHHHHHHHhhhccccCceEEEeccC
Confidence            34679999999999999999999 4889999999997743  347999999999999999 6999999999999998654


Q ss_pred             C
Q 026156           80 E   80 (242)
Q Consensus        80 ~   80 (242)
                      +
T Consensus       123 d  123 (608)
T KOG4212|consen  123 D  123 (608)
T ss_pred             c
Confidence            4

>KOG0109 consensus RNA-binding protein LARK, contains RRM and retroviral-type Zn-finger domains [RNA processing and modification; General function prediction only]

Probab=98.44  E-value=2.5e-07  Score=84.28  Aligned_cols=70  Identities=19%  Similarity=0.260  Sum_probs=65.0

Q ss_pred             cEEEEeCCCCCCCHHHHHHHhccCCCceEEEEeecCCcCceEEEEecCHHHHHHH-HhcCCCeecCeeEEEEecCC
Q 026156            6 YVAEVVGLSPNATEKDIHEFFSHCGDPVHVEIIRSGECGGTAYVTFSNAYALETA-VLLSGATIVDQPVCIIRWGE   80 (242)
Q Consensus         6 ~tV~VsNLs~~~TE~dLrefFs~~G~I~~V~l~~~~~~~~~AfV~F~~~~aA~tA-l~Lng~~l~g~~I~V~~a~~   80 (242)
                      .+++|+||+|.++.++||.-|..+|.+.+++|.+     .++||+|...+++..| ..|||+++.|++++|.....
T Consensus        79 tkl~vgNis~tctn~ElRa~fe~ygpviecdivk-----dy~fvh~d~~eda~~air~l~~~~~~gk~m~vq~sts  149 (346)
T KOG0109|consen   79 TKLHVGNISPTCTNQELRAKFEKYGPVIECDIVK-----DYAFVHFDRAEDAVEAIRGLDNTEFQGKRMHVQLSTS  149 (346)
T ss_pred             cccccCCCCccccCHHHhhhhcccCCceeeeeec-----ceeEEEEeeccchHHHHhcccccccccceeeeeeecc
Confidence            5799999999999999999999999999999985     5999999999999999 69999999999999986543

>KOG4209 consensus Splicing factor RNPS1, SR protein superfamily [RNA processing and modification]

Probab=98.44  E-value=3.4e-07  Score=81.38  Aligned_cols=77  Identities=23%  Similarity=0.200  Sum_probs=69.3

Q ss_pred             CCcEEEEeCCCCCCCHHHHHHHhccCCCceEEEEeecCC---cCceEEEEecCHHHHHHHHhcCCCeecCeeEEEEecCC
Q 026156            4 GGYVAEVVGLSPNATEKDIHEFFSHCGDPVHVEIIRSGE---CGGTAYVTFSNAYALETAVLLSGATIVDQPVCIIRWGE   80 (242)
Q Consensus         4 ~~~tV~VsNLs~~~TE~dLrefFs~~G~I~~V~l~~~~~---~~~~AfV~F~~~~aA~tAl~Lng~~l~g~~I~V~~a~~   80 (242)
                      +...|||+|+.+.+|-+++...|.-||.|..|.+..+..   ..+|+||.|.+...++.++.|||..|.|+.|.|+....
T Consensus       100 d~~sv~v~nvd~~~t~~~~e~hf~~Cg~i~~~ti~~d~~~~~~k~~~yvef~~~~~~~~ay~l~gs~i~~~~i~vt~~r~  179 (231)
T KOG4209|consen  100 DAPSVWVGNVDFLVTLTKIELHFESCGGINRVTVPKDKFRGHPKGFAYVEFSSYELVEEAYKLDGSEIPGPAIEVTLKRT  179 (231)
T ss_pred             CCceEEEeccccccccchhhheeeccCCccceeeeccccCCCcceeEEEecccHhhhHHHhhcCCcccccccceeeeeee
Confidence            457899999999999999999999999999999987643   35699999999999999999999999999999987643

>KOG0116 consensus RasGAP SH3 binding protein rasputin, contains NTF2 and RRM domains [Signal transduction mechanisms]

Probab=98.44  E-value=4.2e-07  Score=87.02  Aligned_cols=75  Identities=23%  Similarity=0.193  Sum_probs=65.9

Q ss_pred             cEEEEeCCCCCCCHHHHHHHhccCCCceEEEEeecC--Cc-CceEEEEecCHHHHHHHHhcCCCeecCeeEEEEecCC
Q 026156            6 YVAEVVGLSPNATEKDIHEFFSHCGDPVHVEIIRSG--EC-GGTAYVTFSNAYALETAVLLSGATIVDQPVCIIRWGE   80 (242)
Q Consensus         6 ~tV~VsNLs~~~TE~dLrefFs~~G~I~~V~l~~~~--~~-~~~AfV~F~~~~aA~tAl~Lng~~l~g~~I~V~~a~~   80 (242)
                      .+|||.|||+++++.+|+++|..||.|+...|....  +. .+|+||+|++..+++.|++-+--.|+++.+.|..-..
T Consensus       289 ~~i~V~nlP~da~~~~l~~~Fk~FG~Ik~~~I~vr~~~~~~~~fgFV~f~~~~~~~~~i~Asp~~ig~~kl~Veek~~  366 (419)
T KOG0116|consen  289 LGIFVKNLPPDATPAELEEVFKQFGPIKEGGIQVRSPGGKNPCFGFVEFENAAAVQNAIEASPLEIGGRKLNVEEKRP  366 (419)
T ss_pred             cceEeecCCCCCCHHHHHHHHhhcccccccceEEeccCCCcCceEEEEEeecchhhhhhhcCccccCCeeEEEEeccc
Confidence            469999999999999999999999999999888532  22 2899999999999999999998889999999985543

>KOG1548 consensus Transcription elongation factor TAT-SF1 [Transcription]

Probab=98.39  E-value=8.1e-07  Score=82.43  Aligned_cols=73  Identities=22%  Similarity=0.315  Sum_probs=64.6

Q ss_pred             cEEEEeCCCCCCCHHHHHHHhccCCCceE--------EEEeecCC--cCceEEEEecCHHHHHHH-HhcCCCeecCeeEE
Q 026156            6 YVAEVVGLSPNATEKDIHEFFSHCGDPVH--------VEIIRSGE--CGGTAYVTFSNAYALETA-VLLSGATIVDQPVC   74 (242)
Q Consensus         6 ~tV~VsNLs~~~TE~dLrefFs~~G~I~~--------V~l~~~~~--~~~~AfV~F~~~~aA~tA-l~Lng~~l~g~~I~   74 (242)
                      ..|||+|||+.+|-+++.++|+.||-|..        |+|.++..  .++-|.++|-..++++-| .+|++..|.|+.|+
T Consensus       135 t~VYVsgLP~DiT~dE~~~~~sKcGiI~~d~~t~epk~KlYrd~~G~lKGDaLc~y~K~ESVeLA~~ilDe~~~rg~~~r  214 (382)
T KOG1548|consen  135 TSVYVSGLPLDITVDEFAEVMSKCGIIMRDPQTGEPKVKLYRDNQGKLKGDALCCYIKRESVELAIKILDEDELRGKKLR  214 (382)
T ss_pred             ceEEecCCCCcccHHHHHHHHHhcceEeccCCCCCeeEEEEecCCCCccCceEEEeecccHHHHHHHHhCcccccCcEEE
Confidence            35999999999999999999999998853        67776643  347899999999999999 69999999999999


Q ss_pred             EEec
Q 026156           75 IIRW   78 (242)
Q Consensus        75 V~~a   78 (242)
                      |..+
T Consensus       215 VerA  218 (382)
T KOG1548|consen  215 VERA  218 (382)
T ss_pred             Eehh
Confidence            9977

>KOG4205 consensus RNA-binding protein musashi/mRNA cleavage and polyadenylation factor I complex, subunit HRP1 [RNA processing and modification]

Probab=98.39  E-value=3.9e-07  Score=84.25  Aligned_cols=79  Identities=20%  Similarity=0.248  Sum_probs=70.3

Q ss_pred             CCcEEEEeCCCCCCCHHHHHHHhccCCCceEEEEeecCCc---CceEEEEecCHHHHHHHHhcCCCeecCeeEEEEecCC
Q 026156            4 GGYVAEVVGLSPNATEKDIHEFFSHCGDPVHVEIIRSGEC---GGTAYVTFSNAYALETAVLLSGATIVDQPVCIIRWGE   80 (242)
Q Consensus         4 ~~~tV~VsNLs~~~TE~dLrefFs~~G~I~~V~l~~~~~~---~~~AfV~F~~~~aA~tAl~Lng~~l~g~~I~V~~a~~   80 (242)
                      +.+++||++|++.++++.|+++|+.+|+|.++.++++..+   .+|+||+|.+++.+..++...-+.|+|+.|.+.++-+
T Consensus         5 ~~~KlfiGgisw~ttee~Lr~yf~~~Gev~d~~vm~d~~t~rsrgFgfv~f~~~~~v~~vl~~~~h~~dgr~ve~k~av~   84 (311)
T KOG4205|consen    5 ESGKLFIGGLSWETTEESLREYFSQFGEVTDCVVMRDPSTGRSRGFGFVTFATPEGVDAVLNARTHKLDGRSVEPKRAVS   84 (311)
T ss_pred             CCcceeecCcCccccHHHHHHHhcccCceeeEEEeccCCCCCcccccceecCCCcchheeecccccccCCccccceeccC
Confidence            3478999999999999999999999999999999987543   4699999999999999988888999999999988754


Q ss_pred             CC
Q 026156           81 YT   82 (242)
Q Consensus        81 ~~   82 (242)
                      ..
T Consensus        85 r~   86 (311)
T KOG4205|consen   85 RE   86 (311)
T ss_pred             cc
Confidence            43

>KOG4205 consensus RNA-binding protein musashi/mRNA cleavage and polyadenylation factor I complex, subunit HRP1 [RNA processing and modification]

Probab=98.36  E-value=6.1e-07  Score=82.97  Aligned_cols=78  Identities=23%  Similarity=0.291  Sum_probs=71.0

Q ss_pred             cEEEEeCCCCCCCHHHHHHHhccCCCceEEEEeecCCc---CceEEEEecCHHHHHHHHhcCCCeecCeeEEEEecCCCC
Q 026156            6 YVAEVVGLSPNATEKDIHEFFSHCGDPVHVEIIRSGEC---GGTAYVTFSNAYALETAVLLSGATIVDQPVCIIRWGEYT   82 (242)
Q Consensus         6 ~tV~VsNLs~~~TE~dLrefFs~~G~I~~V~l~~~~~~---~~~AfV~F~~~~aA~tAl~Lng~~l~g~~I~V~~a~~~~   82 (242)
                      ..|||++||+.++|++++++|.++|.|..+.++.|.++   .+|+||+|.++++++.++...-+.|.++.|.|..+.+-.
T Consensus        98 kkiFvGG~~~~~~e~~~r~yfe~~g~v~~~~~~~d~~~~~~rgFgfv~~~~e~sVdkv~~~~f~~~~gk~vevkrA~pk~  177 (311)
T KOG4205|consen   98 KKIFVGGLPPDTTEEDFKDYFEQFGKVADVVIMYDKTTSRPRGFGFVTFDSEDSVDKVTLQKFHDFNGKKVEVKRAIPKE  177 (311)
T ss_pred             eEEEecCcCCCCchHHHhhhhhccceeEeeEEeecccccccccceeeEeccccccceecccceeeecCceeeEeeccchh
Confidence            48999999999999999999999999999999987653   369999999999999999999999999999999886654


Q ss_pred             C
Q 026156           83 D   83 (242)
Q Consensus        83 ~   83 (242)
                      .
T Consensus       178 ~  178 (311)
T KOG4205|consen  178 V  178 (311)
T ss_pred             h
Confidence            3

>KOG0123 consensus Polyadenylate-binding protein (RRM superfamily) [RNA processing and modification; Translation, ribosomal structure and biogenesis]

Probab=98.36  E-value=1.3e-06  Score=82.64  Aligned_cols=69  Identities=25%  Similarity=0.325  Sum_probs=63.3

Q ss_pred             EEEEeCCCCCCCHHHHHHHhccCCCceEEEEeecCCcCceEEEEecCHHHHHHH-HhcCCCeecCeeEEEEec
Q 026156            7 VAEVVGLSPNATEKDIHEFFSHCGDPVHVEIIRSGECGGTAYVTFSNAYALETA-VLLSGATIVDQPVCIIRW   78 (242)
Q Consensus         7 tV~VsNLs~~~TE~dLrefFs~~G~I~~V~l~~~~~~~~~AfV~F~~~~aA~tA-l~Lng~~l~g~~I~V~~a   78 (242)
                      .+||+   |.+||..|.++|+..|++.+|++.++-.+-++|||.|.++..|+.| -.||...|.|++|+|-..
T Consensus         3 sl~vg---~~v~e~~l~~~f~~~~~v~s~rvc~d~tslgy~yvnf~~~~da~~A~~~~n~~~~~~~~~rim~s   72 (369)
T KOG0123|consen    3 SLYVG---PDVTEAMLFDKFSPAGPVLSIRVCRDATSLGYAYVNFQQPADAERALDTMNFDVLKGKPIRIMWS   72 (369)
T ss_pred             ceecC---CcCChHHHHHHhcccCCceeEEEeecCCccceEEEecCCHHHHHHHHHHcCCcccCCcEEEeehh
Confidence            68899   9999999999999999999999998873337999999999999999 599999999999999754

>KOG0110 consensus RNA-binding protein (RRM superfamily) [General function prediction only]

Probab=98.35  E-value=1.1e-06  Score=87.61  Aligned_cols=74  Identities=20%  Similarity=0.276  Sum_probs=66.3

Q ss_pred             cEEEEeCCCCCCCHHHHHHHhccCCCceEEEEeecCC------cCceEEEEecCHHHHHHH-HhcCCCeecCeeEEEEec
Q 026156            6 YVAEVVGLSPNATEKDIHEFFSHCGDPVHVEIIRSGE------CGGTAYVTFSNAYALETA-VLLSGATIVDQPVCIIRW   78 (242)
Q Consensus         6 ~tV~VsNLs~~~TE~dLrefFs~~G~I~~V~l~~~~~------~~~~AfV~F~~~~aA~tA-l~Lng~~l~g~~I~V~~a   78 (242)
                      +++||+||++.+|.++|.+.|+..|.|.++.|...+.      +.||+||+|.+++.|+.| ..|+|+.|+|+.|.|..+
T Consensus       516 t~lfvkNlnf~Tt~e~l~~~F~k~G~VlS~~I~kkkd~~~k~lSmGfgFVEF~~~e~A~~a~k~lqgtvldGH~l~lk~S  595 (725)
T KOG0110|consen  516 TKLFVKNLNFDTTLEDLEDLFSKQGTVLSIEISKKKDPANKYLSMGFGFVEFAKPESAQAALKALQGTVLDGHKLELKIS  595 (725)
T ss_pred             hhhhhhcCCcccchhHHHHHHHhcCeEEEEEEeccccccccccccceeEEEecCHHHHHHHHHHhcCceecCceEEEEec
Confidence            3499999999999999999999999999999875432      238999999999999999 588999999999999987


Q ss_pred             C
Q 026156           79 G   79 (242)
Q Consensus        79 ~   79 (242)
                      .
T Consensus       596 ~  596 (725)
T KOG0110|consen  596 E  596 (725)
T ss_pred             c
Confidence            6

>KOG4212 consensus RNA-binding protein hnRNP-M [RNA processing and modification]

Probab=98.34  E-value=8.5e-07  Score=84.61  Aligned_cols=74  Identities=16%  Similarity=0.221  Sum_probs=65.3

Q ss_pred             CCCCcEEEEeCCCCCCCHHHHHHHhccCCCceEEEEeecCCcCceEEEEecCHHHHHHH-HhcCCCeecCeeEEEEe
Q 026156            2 YAGGYVAEVVGLSPNATEKDIHEFFSHCGDPVHVEIIRSGECGGTAYVTFSNAYALETA-VLLSGATIVDQPVCIIR   77 (242)
Q Consensus         2 ~~~~~tV~VsNLs~~~TE~dLrefFs~~G~I~~V~l~~~~~~~~~AfV~F~~~~aA~tA-l~Lng~~l~g~~I~V~~   77 (242)
                      .+..++|+|.|||.++|.+-||+-|..||.+.+.+|+..+..  .+.|.|.+++.|+.| -+|||..|+|+.|.|+.
T Consensus       533 arKa~qIiirNlP~dfTWqmlrDKfre~G~v~yadime~Gks--kGVVrF~s~edAEra~a~Mngs~l~Gr~I~V~y  607 (608)
T KOG4212|consen  533 ARKACQIIIRNLPFDFTWQMLRDKFREIGHVLYADIMENGKS--KGVVRFFSPEDAERACALMNGSRLDGRNIKVTY  607 (608)
T ss_pred             cccccEEEEecCCccccHHHHHHHHHhccceehhhhhccCCc--cceEEecCHHHHHHHHHHhccCcccCceeeeee
Confidence            445689999999999999999999999999999999644332  459999999999999 69999999999999974

>KOG0131 consensus Splicing factor 3b, subunit 4 [RNA processing and modification]

Probab=98.22  E-value=1.5e-06  Score=74.52  Aligned_cols=73  Identities=21%  Similarity=0.298  Sum_probs=64.0

Q ss_pred             cEEEEeCCCCCCCHHHHHHHhccCCCceEE-EEeecCC---cCceEEEEecCHHHHHHH-HhcCCCeecCeeEEEEec
Q 026156            6 YVAEVVGLSPNATEKDIHEFFSHCGDPVHV-EIIRSGE---CGGTAYVTFSNAYALETA-VLLSGATIVDQPVCIIRW   78 (242)
Q Consensus         6 ~tV~VsNLs~~~TE~dLrefFs~~G~I~~V-~l~~~~~---~~~~AfV~F~~~~aA~tA-l~Lng~~l~g~~I~V~~a   78 (242)
                      ..+||+||.|.+.|+-|.+.||+||.|.+- ++++++.   ..+++||.|.+.++...| -.+||..+..++|+|..+
T Consensus        97 anlfvgNLd~~vDe~~L~dtFsafG~l~~~P~i~rd~~tg~~~~~g~i~~~sfeasd~ai~s~ngq~l~nr~itv~ya  174 (203)
T KOG0131|consen   97 ANLFVGNLDPEVDEKLLYDTFSAFGVLISPPKIMRDPDTGNPKGFGFINYASFEASDAAIGSMNGQYLCNRPITVSYA  174 (203)
T ss_pred             ccccccccCcchhHHHHHHHHHhccccccCCcccccccCCCCCCCeEEechhHHHHHHHHHHhccchhcCCceEEEEE
Confidence            579999999999999999999999998774 6666543   346999999999999999 588999999999999865

>KOG0144 consensus RNA-binding protein CUGBP1/BRUNO (RRM superfamily) [RNA processing and modification]

Probab=98.22  E-value=2.5e-06  Score=81.24  Aligned_cols=74  Identities=22%  Similarity=0.352  Sum_probs=62.4

Q ss_pred             cEEEEeCCCCCCCHHHHHHHhccCCCceEEEEeecCC---cCceEEEEecCHHHHHHHH--hcCCCeecC--eeEEEEec
Q 026156            6 YVAEVVGLSPNATEKDIHEFFSHCGDPVHVEIIRSGE---CGGTAYVTFSNAYALETAV--LLSGATIVD--QPVCIIRW   78 (242)
Q Consensus         6 ~tV~VsNLs~~~TE~dLrefFs~~G~I~~V~l~~~~~---~~~~AfV~F~~~~aA~tAl--~Lng~~l~g--~~I~V~~a   78 (242)
                      -.+||+-||-.++|+|||++|..||.|.+|.|++|+.   +.++|||+|...+++..|+  +-|-.+|-|  .+|.|.++
T Consensus        35 vKlfVgqIprt~sE~dlr~lFe~yg~V~einl~kDk~t~~s~gcCFv~~~trk~a~~a~~Alhn~ktlpG~~~pvqvk~A  114 (510)
T KOG0144|consen   35 VKLFVGQIPRTASEKDLRELFEKYGNVYEINLIKDKSTGQSKGCCFVKYYTRKEADEAINALHNQKTLPGMHHPVQVKYA  114 (510)
T ss_pred             hhheeccCCccccHHHHHHHHHHhCceeEEEeecccccCcccceEEEEeccHHHHHHHHHHhhcccccCCCCcceeeccc
Confidence            4689999999999999999999999999999999854   4579999999999999993  446667755  56777765


Q ss_pred             C
Q 026156           79 G   79 (242)
Q Consensus        79 ~   79 (242)
                      .
T Consensus       115 d  115 (510)
T KOG0144|consen  115 D  115 (510)
T ss_pred             c
Confidence            3

>KOG0124 consensus Polypyrimidine tract-binding protein PUF60 (RRM superfamily) [RNA processing and modification]

Probab=98.21  E-value=3e-06  Score=79.47  Aligned_cols=78  Identities=18%  Similarity=0.251  Sum_probs=69.4

Q ss_pred             cEEEEeCCCCCCCHHHHHHHhccCCCceEEEEeecCC---cCceEEEEecCHHHHHHH-HhcCCCeecCeeEEEEecCCC
Q 026156            6 YVAEVVGLSPNATEKDIHEFFSHCGDPVHVEIIRSGE---CGGTAYVTFSNAYALETA-VLLSGATIVDQPVCIIRWGEY   81 (242)
Q Consensus         6 ~tV~VsNLs~~~TE~dLrefFs~~G~I~~V~l~~~~~---~~~~AfV~F~~~~aA~tA-l~Lng~~l~g~~I~V~~a~~~   81 (242)
                      ..|||..+.|+.+|+||+..|.-||+|.+|.|.+...   .++|+||+|.+.++-..| -.+|--.|+|+.++|..+-.+
T Consensus       211 nRiYVaSvHpDLSe~DiKSVFEAFG~I~~C~LAr~pt~~~HkGyGfiEy~n~qs~~eAiasMNlFDLGGQyLRVGk~vTP  290 (544)
T KOG0124|consen  211 NRIYVASVHPDLSETDIKSVFEAFGEIVKCQLARAPTGRGHKGYGFIEYNNLQSQSEAIASMNLFDLGGQYLRVGKCVTP  290 (544)
T ss_pred             heEEeeecCCCccHHHHHHHHHhhcceeeEEeeccCCCCCccceeeEEeccccchHHHhhhcchhhcccceEecccccCC
Confidence            5799999999999999999999999999999998743   457999999999999999 588989999999999877655


Q ss_pred             CC
Q 026156           82 TD   83 (242)
Q Consensus        82 ~~   83 (242)
                      |+
T Consensus       291 P~  292 (544)
T KOG0124|consen  291 PD  292 (544)
T ss_pred             Cc
Confidence            54

>KOG0146 consensus RNA-binding protein ETR-3 (RRM superfamily) [RNA processing and modification]

Probab=98.18  E-value=2.1e-06  Score=77.76  Aligned_cols=77  Identities=14%  Similarity=0.180  Sum_probs=70.1

Q ss_pred             CCCcEEEEeCCCCCCCHHHHHHHhccCCCceEEEEeecC---CcCceEEEEecCHHHHHHH-HhcCCCeecCeeEEEEec
Q 026156            3 AGGYVAEVVGLSPNATEKDIHEFFSHCGDPVHVEIIRSG---ECGGTAYVTFSNAYALETA-VLLSGATIVDQPVCIIRW   78 (242)
Q Consensus         3 ~~~~tV~VsNLs~~~TE~dLrefFs~~G~I~~V~l~~~~---~~~~~AfV~F~~~~aA~tA-l~Lng~~l~g~~I~V~~a   78 (242)
                      +++|.+||=.||.+..+.+|...|-.||.|.+-++..|+   .+++|+||.|.++.+++.| ..+||-.|+-++++|..-
T Consensus       283 PeGCNlFIYHLPQEFgDaEliQmF~PFGhivSaKVFvDRATNQSKCFGFVSfDNp~SaQaAIqAMNGFQIGMKRLKVQLK  362 (371)
T KOG0146|consen  283 PEGCNLFIYHLPQEFGDAELIQMFLPFGHIVSAKVFVDRATNQSKCFGFVSFDNPASAQAAIQAMNGFQIGMKRLKVQLK  362 (371)
T ss_pred             CCcceEEEEeCchhhccHHHHHHhccccceeeeeeeehhccccccceeeEecCCchhHHHHHHHhcchhhhhhhhhhhhc
Confidence            577999999999999999999999999999999999774   3567999999999999999 699999999999999854


Q ss_pred             C
Q 026156           79 G   79 (242)
Q Consensus        79 ~   79 (242)
                      .
T Consensus       363 R  363 (371)
T KOG0146|consen  363 R  363 (371)
T ss_pred             C
Confidence            3

>KOG0533 consensus RRM motif-containing protein [RNA processing and modification]

Probab=98.18  E-value=5.9e-06  Score=74.04  Aligned_cols=78  Identities=23%  Similarity=0.293  Sum_probs=68.2

Q ss_pred             CcEEEEeCCCCCCCHHHHHHHhccCCCceEEEEeec--CCcCceEEEEecCHHHHHHH-HhcCCCeecCeeEEEEecCCC
Q 026156            5 GYVAEVVGLSPNATEKDIHEFFSHCGDPVHVEIIRS--GECGGTAYVTFSNAYALETA-VLLSGATIVDQPVCIIRWGEY   81 (242)
Q Consensus         5 ~~tV~VsNLs~~~TE~dLrefFs~~G~I~~V~l~~~--~~~~~~AfV~F~~~~aA~tA-l~Lng~~l~g~~I~V~~a~~~   81 (242)
                      ..+|+|+||++.++++||+++|..||.++.+-+..+  +.+.++|-|.|...++|..| ..|||..|+|.++.+....+.
T Consensus        83 ~~~v~v~NL~~~V~~~Dl~eLF~~~~~~~r~~vhy~~~G~s~Gta~v~~~r~~DA~~avk~~~gv~ldG~~mk~~~i~~~  162 (243)
T KOG0533|consen   83 STKVNVSNLPYGVIDADLKELFAEFGELKRVAVHYDRAGRSLGTADVSFNRRDDAERAVKKYNGVALDGRPMKIEIISSP  162 (243)
T ss_pred             cceeeeecCCcCcchHHHHHHHHHhccceEEeeccCCCCCCCccceeeecchHhHHHHHHHhcCcccCCceeeeEEecCc
Confidence            368999999999999999999999999999888755  34558999999999999999 699999999999999866543


Q ss_pred             C
Q 026156           82 T   82 (242)
Q Consensus        82 ~   82 (242)
                      .
T Consensus       163 ~  163 (243)
T KOG0533|consen  163 S  163 (243)
T ss_pred             c
Confidence            3

>KOG0106 consensus Alternative splicing factor SRp55/B52/SRp75 (RRM superfamily) [RNA processing and modification]

Probab=98.16  E-value=2.1e-06  Score=75.60  Aligned_cols=69  Identities=19%  Similarity=0.291  Sum_probs=62.7

Q ss_pred             cEEEEeCCCCCCCHHHHHHHhccCCCceEEEEeecCCcCceEEEEecCHHHHHHH-HhcCCCeecCeeEEEEecC
Q 026156            6 YVAEVVGLSPNATEKDIHEFFSHCGDPVHVEIIRSGECGGTAYVTFSNAYALETA-VLLSGATIVDQPVCIIRWG   79 (242)
Q Consensus         6 ~tV~VsNLs~~~TE~dLrefFs~~G~I~~V~l~~~~~~~~~AfV~F~~~~aA~tA-l~Lng~~l~g~~I~V~~a~   79 (242)
                      ..|||++|++.+.+++|.+||..+|+|.++.|.     .+|+||+|+++.+|+.| --|||..|.+..+.|..+.
T Consensus         2 ~rv~vg~~~~~~~~~d~E~~f~~yg~~~d~~mk-----~gf~fv~fed~rda~Dav~~l~~~~l~~e~~vve~~r   71 (216)
T KOG0106|consen    2 PRVYIGRLPYRARERDVERFFKGYGKIPDADMK-----NGFGFVEFEDPRDADDAVHDLDGKELCGERLVVEHAR   71 (216)
T ss_pred             CceeecccCCccchhHHHHHHhhccccccceee-----cccceeccCchhhhhcccchhcCceecceeeeeeccc
Confidence            369999999999999999999999999999997     46899999999999999 6999999999987776554

>KOG0132 consensus RNA polymerase II C-terminal domain-binding protein RA4, contains RPR and RRM domains [RNA processing and modification; Transcription]

Probab=98.16  E-value=3.9e-06  Score=84.46  Aligned_cols=69  Identities=25%  Similarity=0.374  Sum_probs=64.3

Q ss_pred             CcEEEEeCCCCCCCHHHHHHHhccCCCceEEEEeecCCcCceEEEEecCHHHHHHH-HhcCCCeecCeeEEEE
Q 026156            5 GYVAEVVGLSPNATEKDIHEFFSHCGDPVHVEIIRSGECGGTAYVTFSNAYALETA-VLLSGATIVDQPVCII   76 (242)
Q Consensus         5 ~~tV~VsNLs~~~TE~dLrefFs~~G~I~~V~l~~~~~~~~~AfV~F~~~~aA~tA-l~Lng~~l~g~~I~V~   76 (242)
                      .+|+||++|+.+++|.||+..|..||.|.+|.++..   .++|||+....++|++| ..|++..+.++.|+|.
T Consensus       421 SrTLwvG~i~k~v~e~dL~~~feefGeiqSi~li~~---R~cAfI~M~~RqdA~kalqkl~n~kv~~k~Iki~  490 (894)
T KOG0132|consen  421 SRTLWVGGIPKNVTEQDLANLFEEFGEIQSIILIPP---RGCAFIKMVRRQDAEKALQKLSNVKVADKTIKIA  490 (894)
T ss_pred             eeeeeeccccchhhHHHHHHHHHhcccceeEeeccC---CceeEEEEeehhHHHHHHHHHhcccccceeeEEe
Confidence            379999999999999999999999999999999854   36899999999999999 6999999999999997

>KOG4454 consensus RNA binding protein (RRM superfamily) [General function prediction only]

Probab=98.15  E-value=8.5e-07  Score=78.14  Aligned_cols=77  Identities=19%  Similarity=0.168  Sum_probs=68.4

Q ss_pred             CCcEEEEeCCCCCCCHHHHHHHhccCCCceEEEEeecCC-cCceEEEEecCHHHHHHH-HhcCCCeecCeeEEEEecCC
Q 026156            4 GGYVAEVVGLSPNATEKDIHEFFSHCGDPVHVEIIRSGE-CGGTAYVTFSNAYALETA-VLLSGATIVDQPVCIIRWGE   80 (242)
Q Consensus         4 ~~~tV~VsNLs~~~TE~dLrefFs~~G~I~~V~l~~~~~-~~~~AfV~F~~~~aA~tA-l~Lng~~l~g~~I~V~~a~~   80 (242)
                      .++||+|.|+...++|+-|.|+|-..|+|..|.|..... ..+||||.|+++-++.-| .++||..|.++.+.|++-+.
T Consensus         8 ~drtl~v~n~~~~v~eelL~ElfiqaGPV~kv~ip~~~d~~~kFa~v~f~~E~sv~~a~~L~ng~~l~~~e~q~~~r~G   86 (267)
T KOG4454|consen    8 MDRTLLVQNMYSGVSEELLSELFIQAGPVYKVGIPSGQDQEQKFAYVFFPNENSVQLAGQLENGDDLEEDEEQRTLRCG   86 (267)
T ss_pred             hhhHHHHHhhhhhhhHHHHHHHhhccCceEEEeCCCCccCCCceeeeecccccchhhhhhhcccchhccchhhcccccC
Confidence            358999999999999999999999999999999986543 335999999999999999 79999999999999986543

>KOG4661 consensus Hsp27-ERE-TATA-binding protein/Scaffold attachment factor (SAF-B) [Transcription]

Probab=98.11  E-value=5.8e-06  Score=81.17  Aligned_cols=80  Identities=18%  Similarity=0.220  Sum_probs=71.2

Q ss_pred             CCCcEEEEeCCCCCCCHHHHHHHhccCCCceEEEEeec---CCcCceEEEEecCHHHHHHH-HhcCCCeecCeeEEEEec
Q 026156            3 AGGYVAEVVGLSPNATEKDIHEFFSHCGDPVHVEIIRS---GECGGTAYVTFSNAYALETA-VLLSGATIVDQPVCIIRW   78 (242)
Q Consensus         3 ~~~~tV~VsNLs~~~TE~dLrefFs~~G~I~~V~l~~~---~~~~~~AfV~F~~~~aA~tA-l~Lng~~l~g~~I~V~~a   78 (242)
                      ...+.++|++|+..+.-.||+.+||+||+|.-.+++.+   ++..+|+|||+.....|.++ ..|+.++|-|+-|.|..+
T Consensus       403 ~~gRNlWVSGLSstTRAtDLKnlFSKyGKVvGAKVVTNaRsPGaRCYGfVTMSts~eAtkCI~hLHrTELHGrmISVEka  482 (940)
T KOG4661|consen  403 TLGRNLWVSGLSSTTRATDLKNLFSKYGKVVGAKVVTNARSPGARCYGFVTMSTSAEATKCIEHLHRTELHGRMISVEKA  482 (940)
T ss_pred             ccccceeeeccccchhhhHHHHHHHHhcceeceeeeecCCCCCcceeEEEEecchHHHHHHHHHhhhhhhcceeeeeeec
Confidence            34578999999999999999999999999999988854   44557999999999999999 699999999999999988


Q ss_pred             CCCC
Q 026156           79 GEYT   82 (242)
Q Consensus        79 ~~~~   82 (242)
                      .+-+
T Consensus       483 KNEp  486 (940)
T KOG4661|consen  483 KNEP  486 (940)
T ss_pred             ccCc
Confidence            6655

>KOG4208 consensus Nucleolar RNA-binding protein NIFK [General function prediction only]

Probab=97.98  E-value=1.6e-05  Score=69.34  Aligned_cols=73  Identities=16%  Similarity=0.210  Sum_probs=63.6

Q ss_pred             cEEEEeCCCCCCCHHHHHHHhccC-CCceEEEEeecC---CcCceEEEEecCHHHHHHH-HhcCCCeecCeeEEEEec
Q 026156            6 YVAEVVGLSPNATEKDIHEFFSHC-GDPVHVEIIRSG---ECGGTAYVTFSNAYALETA-VLLSGATIVDQPVCIIRW   78 (242)
Q Consensus         6 ~tV~VsNLs~~~TE~dLrefFs~~-G~I~~V~l~~~~---~~~~~AfV~F~~~~aA~tA-l~Lng~~l~g~~I~V~~a   78 (242)
                      .-++|..++...-|.++..+|..+ |.+..+++-|+.   .+.+||||+|++++-|+-| -.||+..|.++-+.+.--
T Consensus        50 g~~~~~~~p~g~~e~~~~~~~~q~~g~v~r~rlsRnkrTGNSKgYAFVEFEs~eVA~IaAETMNNYLl~e~lL~c~vm  127 (214)
T KOG4208|consen   50 GVVYVDHIPHGFFETEILNYFRQFGGTVTRFRLSRNKRTGNSKGYAFVEFESEEVAKIAAETMNNYLLMEHLLECHVM  127 (214)
T ss_pred             cceeecccccchhHHHHhhhhhhcCCeeEEEEeecccccCCcCceEEEEeccHHHHHHHHHHhhhhhhhhheeeeEEe
Confidence            468999999999999999998777 889999997653   3457999999999999998 899999999999888744

>KOG0147 consensus Transcriptional coactivator CAPER (RRM superfamily) [Transcription]

Probab=97.91  E-value=4.7e-06  Score=81.14  Aligned_cols=73  Identities=29%  Similarity=0.433  Sum_probs=66.8

Q ss_pred             cEEEEeCCCCCCCHHHHHHHhccCCCceEEEEeecCC---cCceEEEEecCHHHHHHHHhcCCCeecCeeEEEEec
Q 026156            6 YVAEVVGLSPNATEKDIHEFFSHCGDPVHVEIIRSGE---CGGTAYVTFSNAYALETAVLLSGATIVDQPVCIIRW   78 (242)
Q Consensus         6 ~tV~VsNLs~~~TE~dLrefFs~~G~I~~V~l~~~~~---~~~~AfV~F~~~~aA~tAl~Lng~~l~g~~I~V~~a   78 (242)
                      +|||+--|+-.+++.+|.+||+.+|+|..|.|+.+..   ..+.+||+|.|.+.+..|+.|+|..+.|.+|.|.+.
T Consensus       180 Rtvf~~qla~r~~pRdL~efFs~~gkVrdVriI~Dr~s~rskgi~Yvef~D~~sVp~aiaLsGqrllg~pv~vq~s  255 (549)
T KOG0147|consen  180 RTVFCMQLARRNPPRDLEEFFSIVGKVRDVRIIGDRNSRRSKGIAYVEFCDEQSVPLAIALSGQRLLGVPVIVQLS  255 (549)
T ss_pred             HHHHHHHHhhcCCchhHHHHHHhhcCcceeEeeccccchhhcceeEEEEecccchhhHhhhcCCcccCceeEeccc
Confidence            6788888999999999999999999999999998743   357999999999999999999999999999999854

>PF08777 RRM_3: RNA binding motif; InterPro: IPR014886 This domain is found in protein La which functions as an RNA chaperone during RNA polymerase III transcription, and can also stimulate translation initiation

Probab=97.86  E-value=4.2e-05  Score=60.13  Aligned_cols=52  Identities=29%  Similarity=0.463  Sum_probs=35.1

Q ss_pred             cEEEEeCCCCCCCHHHHHHHhccCCCceEEEEeecCCcCceEEEEecCHHHHHHH
Q 026156            6 YVAEVVGLSPNATEKDIHEFFSHCGDPVHVEIIRSGECGGTAYVTFSNAYALETA   60 (242)
Q Consensus         6 ~tV~VsNLs~~~TE~dLrefFs~~G~I~~V~l~~~~~~~~~AfV~F~~~~aA~tA   60 (242)
                      +.|+|.|++..++-++|++.|+.+|+|.+|.+.+.   ...|||-|.++++|+.|
T Consensus         2 ~il~~~g~~~~~~re~iK~~f~~~g~V~yVD~~~G---~~~g~VRf~~~~~A~~a   53 (105)
T PF08777_consen    2 CILKFSGLGEPTSREDIKEAFSQFGEVAYVDFSRG---DTEGYVRFKTPEAAQKA   53 (105)
T ss_dssp             -EEEEEE--SS--HHHHHHHT-SS--EEEEE--TT----SEEEEEESS---HHHH
T ss_pred             eEEEEecCCCCcCHHHHHHHHHhcCCcceEEecCC---CCEEEEEECCcchHHHH
Confidence            57999999999999999999999999999999853   24899999999999988

It contains a five stranded beta sheet which forms an atypical RNA recognition motif []. ; PDB: 1OWX_A.

>KOG4660 consensus Protein Mei2, essential for commitment to meiosis, and related proteins [Cell cycle control, cell division, chromosome partitioning]

Probab=97.85  E-value=1e-05  Score=78.91  Aligned_cols=68  Identities=16%  Similarity=0.220  Sum_probs=61.6

Q ss_pred             CcEEEEeCCCCCCCHHHHHHHhccCCCceEEEEeecCCcCceEEEEecCHHHHHHH-HhcCCCeecCeeEE
Q 026156            5 GYVAEVVGLSPNATEKDIHEFFSHCGDPVHVEIIRSGECGGTAYVTFSNAYALETA-VLLSGATIVDQPVC   74 (242)
Q Consensus         5 ~~tV~VsNLs~~~TE~dLrefFs~~G~I~~V~l~~~~~~~~~AfV~F~~~~aA~tA-l~Lng~~l~g~~I~   74 (242)
                      .++|.|-||++.+++++|++.|+.||+|..|+..+..  .+..||+|-|-..|+.| ..||+..|.|+.|.
T Consensus        75 ~~~L~v~nl~~~Vsn~~L~~~f~~yGeir~ir~t~~~--~~~~~v~FyDvR~A~~Alk~l~~~~~~~~~~k  143 (549)
T KOG4660|consen   75 QGTLVVFNLPRSVSNDTLLRIFGAYGEIREIRETPNK--RGIVFVEFYDVRDAERALKALNRREIAGKRIK  143 (549)
T ss_pred             cceEEEEecCCcCCHHHHHHHHHhhcchhhhhccccc--CceEEEEEeehHhHHHHHHHHHHHHhhhhhhc
Confidence            3699999999999999999999999999997766443  36899999999999999 69999999999988

>KOG0110 consensus RNA-binding protein (RRM superfamily) [General function prediction only]

Probab=97.83  E-value=1.5e-05  Score=79.54  Aligned_cols=73  Identities=15%  Similarity=0.198  Sum_probs=64.8

Q ss_pred             cEEEEeCCCCCCCHHHHHHHhccCCCceEEEEeecCC---cCceEEEEecCHHHHHHH-HhcCCCeecCeeEEEEec
Q 026156            6 YVAEVVGLSPNATEKDIHEFFSHCGDPVHVEIIRSGE---CGGTAYVTFSNAYALETA-VLLSGATIVDQPVCIIRW   78 (242)
Q Consensus         6 ~tV~VsNLs~~~TE~dLrefFs~~G~I~~V~l~~~~~---~~~~AfV~F~~~~aA~tA-l~Lng~~l~g~~I~V~~a   78 (242)
                      +.|.|.|||..++-++|+++|+.||.|.+|+|+...+   ..+||||+|-.++.+..| -.|.++-|.|+++.+.-+
T Consensus       614 tKIlVRNipFeAt~rEVr~LF~aFGqlksvRlPKK~~k~a~rGF~Fv~f~t~~ea~nA~~al~STHlyGRrLVLEwA  690 (725)
T KOG0110|consen  614 TKILVRNIPFEATKREVRKLFTAFGQLKSVRLPKKIGKGAHRGFGFVDFLTPREAKNAFDALGSTHLYGRRLVLEWA  690 (725)
T ss_pred             ceeeeeccchHHHHHHHHHHHhcccceeeeccchhhcchhhccceeeeccCcHHHHHHHHhhcccceechhhheehh
Confidence            5799999999999999999999999999999996522   247999999999999999 577799999999988743

>PF14605 Nup35_RRM_2: Nup53/35/40-type RNA recognition motif

Probab=97.79  E-value=4.7e-05  Score=52.77  Aligned_cols=52  Identities=23%  Similarity=0.407  Sum_probs=43.2

Q ss_pred             cEEEEeCCCCCCCHHHHHHHhccCCCceEEEEeecCCcCceEEEEecCHHHHHHHH
Q 026156            6 YVAEVVGLSPNATEKDIHEFFSHCGDPVHVEIIRSGECGGTAYVTFSNAYALETAV   61 (242)
Q Consensus         6 ~tV~VsNLs~~~TE~dLrefFs~~G~I~~V~l~~~~~~~~~AfV~F~~~~aA~tAl   61 (242)
                      +.|-|++.++...+ +++++|..||+|.++.+.   ....+.||.|.++.+|++||
T Consensus         2 ~wI~V~Gf~~~~~~-~vl~~F~~fGeI~~~~~~---~~~~~~~l~y~~~~~ae~Al   53 (53)
T PF14605_consen    2 TWISVSGFPPDLAE-EVLEHFASFGEIVDIYVP---ESTNWMYLKYKSRKDAEKAL   53 (53)
T ss_pred             cEEEEEeECchHHH-HHHHHHHhcCCEEEEEcC---CCCcEEEEEECCHHHHHhhC
Confidence            58999999988765 455588899999999886   22469999999999999984

>KOG4211 consensus Splicing factor hnRNP-F and related RNA-binding proteins [RNA processing and modification]

Probab=97.71  E-value=8.2e-05  Score=71.90  Aligned_cols=74  Identities=24%  Similarity=0.238  Sum_probs=61.2

Q ss_pred             CcEEEEeCCCCCCCHHHHHHHhccCCCceE-EEEeecCC--cCceEEEEecCHHHHHHHHhcCCCeecCeeEEEEec
Q 026156            5 GYVAEVVGLSPNATEKDIHEFFSHCGDPVH-VEIIRSGE--CGGTAYVTFSNAYALETAVLLSGATIVDQPVCIIRW   78 (242)
Q Consensus         5 ~~tV~VsNLs~~~TE~dLrefFs~~G~I~~-V~l~~~~~--~~~~AfV~F~~~~aA~tAl~Lng~~l~g~~I~V~~a   78 (242)
                      ...|.+.+||+.||++||.+||+-.=.+.. |.++.+..  ..+-|||.|+.++.++.||.-+...|+.+-|.|-++
T Consensus       103 d~vVRLRGLPfscte~dI~~FFaGL~Iv~~gi~l~~d~rgR~tGEAfVqF~sqe~ae~Al~rhre~iGhRYIEvF~S  179 (510)
T KOG4211|consen  103 DGVVRLRGLPFSCTEEDIVEFFAGLEIVPDGILLPMDQRGRPTGEAFVQFESQESAEIALGRHRENIGHRYIEVFRS  179 (510)
T ss_pred             CceEEecCCCccCcHHHHHHHhcCCcccccceeeeccCCCCcccceEEEecCHHHHHHHHHHHHHhhccceEEeehh
Confidence            468999999999999999999997754444 33444322  457999999999999999999999999999999754

>KOG1457 consensus RNA binding protein (contains RRM repeats) [General function prediction only]

Probab=97.68  E-value=0.00022  Score=63.34  Aligned_cols=77  Identities=17%  Similarity=0.134  Sum_probs=63.2

Q ss_pred             CcEEEEeCCCCCCCHHHHHHHhccCCCceEEEEeec-CC---cCceEEEEecCHHHHHHH-HhcCCCeec---CeeEEEE
Q 026156            5 GYVAEVVGLSPNATEKDIHEFFSHCGDPVHVEIIRS-GE---CGGTAYVTFSNAYALETA-VLLSGATIV---DQPVCII   76 (242)
Q Consensus         5 ~~tV~VsNLs~~~TE~dLrefFs~~G~I~~V~l~~~-~~---~~~~AfV~F~~~~aA~tA-l~Lng~~l~---g~~I~V~   76 (242)
                      .+|+||++||.++-.++|..+|..|---+...|... ++   ++.+||++|.+.+.|..| -.|||..++   ++.++|.
T Consensus        34 VRTLFVSGLP~DvKpREiynLFR~f~GYEgslLK~Tsk~~~~~~pvaFatF~s~q~A~aamnaLNGvrFDpE~~stLhiE  113 (284)
T KOG1457|consen   34 VRTLFVSGLPNDVKPREIYNLFRRFHGYEGSLLKYTSKGDQVCKPVAFATFTSHQFALAAMNALNGVRFDPETGSTLHIE  113 (284)
T ss_pred             cceeeeccCCcccCHHHHHHHhccCCCccceeeeeccCCCccccceEEEEecchHHHHHHHHHhcCeeeccccCceeEee
Confidence            689999999999999999999988866676666533 22   236999999999999999 699999986   6778888


Q ss_pred             ecCCC
Q 026156           77 RWGEY   81 (242)
Q Consensus        77 ~a~~~   81 (242)
                      .+...
T Consensus       114 lAKSN  118 (284)
T KOG1457|consen  114 LAKSN  118 (284)
T ss_pred             ehhcC
Confidence            66443

>KOG0151 consensus Predicted splicing regulator, contains RRM, SWAP and RPR domains [General function prediction only]

Probab=97.66  E-value=0.00017  Score=72.38  Aligned_cols=72  Identities=22%  Similarity=0.238  Sum_probs=63.1

Q ss_pred             CcEEEEeCCCCCCCHHHHHHHhccCCCceEEEEeec---CCc---CceEEEEecCHHHHHHH-HhcCCCeecCeeEEEE
Q 026156            5 GYVAEVVGLSPNATEKDIHEFFSHCGDPVHVEIIRS---GEC---GGTAYVTFSNAYALETA-VLLSGATIVDQPVCII   76 (242)
Q Consensus         5 ~~tV~VsNLs~~~TE~dLrefFs~~G~I~~V~l~~~---~~~---~~~AfV~F~~~~aA~tA-l~Lng~~l~g~~I~V~   76 (242)
                      .+.+||+||+|.++|+.|-.-|+.||+|.+|+|+--   .++   ..++||-|-+..+++.| ..|+|..+.+..+++.
T Consensus       174 TTNlyv~Nlnpsv~E~~ll~tfGrfgPlasvKimwpRtEeEk~r~r~cgfvafmnR~D~era~k~lqg~iv~~~e~K~g  252 (877)
T KOG0151|consen  174 TTNLYVGNLNPSVDENFLLRTFGRFGPLASVKIMWPRTEEEKRRERNCGFVAFMNRADAERALKELQGIIVMEYEMKLG  252 (877)
T ss_pred             ccceeeecCCccccHHHHHHHhcccCcccceeeecccchhhhccccccceeeehhhhhHHHHHHHhcceeeeeeeeeec
Confidence            468999999999999999999999999999999832   121   24899999999999999 5999999999888886

>PF05172 Nup35_RRM: Nup53/35/40-type RNA recognition motif; InterPro: IPR007846 The MPPN (Mitotic PhosphoProtein N end) family is uncharacterised however it probably plays a role in the cell cycle because the family includes mitotic phosphoproteins O13026 from SWISSPROT []

Probab=97.60  E-value=0.00034  Score=54.76  Aligned_cols=73  Identities=18%  Similarity=0.270  Sum_probs=52.3

Q ss_pred             CcEEEEeCCCCCCCHHHHHHHhccCCCceEEE-Eeec---------CCcCceEEEEecCHHHHHHHHhcCCCeecCeeEE
Q 026156            5 GYVAEVVGLSPNATEKDIHEFFSHCGDPVHVE-IIRS---------GECGGTAYVTFSNAYALETAVLLSGATIVDQPVC   74 (242)
Q Consensus         5 ~~tV~VsNLs~~~TE~dLrefFs~~G~I~~V~-l~~~---------~~~~~~AfV~F~~~~aA~tAl~Lng~~l~g~~I~   74 (242)
                      .+.|.|=+.|+. .-..|-+.|+.||.|.+.. +.++         .....+-.|+|.++.+|.+||..||..|.|..+-
T Consensus         6 ~~wVtVFGfp~~-~~~~Vl~~F~~~G~Ile~~~~~~~~~~~~~~~~~~~~NWi~I~Y~~~~~A~rAL~~NG~i~~g~~mv   84 (100)
T PF05172_consen    6 ETWVTVFGFPPS-ASNQVLRHFSSFGTILEHFEVLRSSSGINPYPIPSGGNWIHITYDNPLSAQRALQKNGTIFSGSLMV   84 (100)
T ss_dssp             CCEEEEE---GG-GHHHHHHHHHCCS-EECEEGGG----------E-CCTTEEEEEESSHHHHHHHHTTTTEEETTCEEE
T ss_pred             CeEEEEEccCHH-HHHHHHHHHHhcceEEEeecccccccccccccCCCCCCEEEEECCCHHHHHHHHHhCCeEEcCcEEE
Confidence            467999999998 5667778899999998775 1111         1123599999999999999999999999987665


Q ss_pred             EEec
Q 026156           75 IIRW   78 (242)
Q Consensus        75 V~~a   78 (242)
                      ..++
T Consensus        85 GV~~   88 (100)
T PF05172_consen   85 GVKP   88 (100)
T ss_dssp             EEEE
T ss_pred             EEEE
Confidence            4433

This family also includes Q05166 from SWISSPROT a suppressor of thermosensitive mutations in the DNA polymerase delta gene, Pol III []. The conserved central region appears to be distantly related to the RNA-binding region RNP-1 (RNA recognition motif, IPR000504 from INTERPRO), suggesting an RNA binding function for this protein.; PDB: 1WWH_C 3P3D_A.

>KOG1995 consensus Conserved Zn-finger protein [General function prediction only]

Probab=97.52  E-value=7.4e-05  Score=69.70  Aligned_cols=78  Identities=21%  Similarity=0.268  Sum_probs=65.5

Q ss_pred             CCcEEEEeCCCCCCCHHHHHHHhccCCCceE--------EEEeecCC---cCceEEEEecCHHHHHHH-HhcCCCeecCe
Q 026156            4 GGYVAEVVGLSPNATEKDIHEFFSHCGDPVH--------VEIIRSGE---CGGTAYVTFSNAYALETA-VLLSGATIVDQ   71 (242)
Q Consensus         4 ~~~tV~VsNLs~~~TE~dLrefFs~~G~I~~--------V~l~~~~~---~~~~AfV~F~~~~aA~tA-l~Lng~~l~g~   71 (242)
                      ...+|||-+|+..+++++|-+||..||.|..        |.|-.+.+   .++-|.|+|.|+.+++.| ..+++..+.++
T Consensus        65 ~~~ti~v~g~~d~~~~~~~~~~f~qcg~ikrnK~t~kPki~~y~dkeT~~~KGeatvS~~D~~~akaai~~~agkdf~gn  144 (351)
T KOG1995|consen   65 DNETIFVWGCPDSVCENDNADFFLQCGVIKRNKRTGKPKIKIYTDKETGAPKGEATVSYEDPPAAKAAIEWFAGKDFCGN  144 (351)
T ss_pred             ccccceeeccCccchHHHHHHHHhhcceeccCCCCCCcchhccccccccCcCCceeeeecChhhhhhhhhhhccccccCC
Confidence            4468999999999999999999999999843        44444433   346999999999999999 79999999999


Q ss_pred             eEEEEecCCC
Q 026156           72 PVCIIRWGEY   81 (242)
Q Consensus        72 ~I~V~~a~~~   81 (242)
                      .|+|..+..-
T Consensus       145 ~ikvs~a~~r  154 (351)
T KOG1995|consen  145 TIKVSLAERR  154 (351)
T ss_pred             Cchhhhhhhc
Confidence            9999877543

>KOG1457 consensus RNA binding protein (contains RRM repeats) [General function prediction only]

Probab=97.50  E-value=9.9e-05  Score=65.53  Aligned_cols=62  Identities=21%  Similarity=0.268  Sum_probs=53.1

Q ss_pred             cEEEEeCCCCCCCHHHHHHHhccCCCceEEEEeecCCcCceEEEEecCHHHHHHH-HhcCCCee
Q 026156            6 YVAEVVGLSPNATEKDIHEFFSHCGDPVHVEIIRSGECGGTAYVTFSNAYALETA-VLLSGATI   68 (242)
Q Consensus         6 ~tV~VsNLs~~~TE~dLrefFs~~G~I~~V~l~~~~~~~~~AfV~F~~~~aA~tA-l~Lng~~l   68 (242)
                      .|+||.||+++|+|++|+..|+.|--...++|...++ ...||++|++.+-|..| ..|.|-.|
T Consensus       211 stlfianl~~~~~ed~l~~~~~~~~gf~~l~~~~~~g-~~vaf~~~~~~~~at~am~~lqg~~~  273 (284)
T KOG1457|consen  211 STLFIANLGPNCTEDELKQLLSRYPGFHILKIRARGG-MPVAFADFEEIEQATDAMNHLQGNLL  273 (284)
T ss_pred             hhHhhhccCCCCCHHHHHHHHHhCCCceEEEEecCCC-cceEeecHHHHHHHHHHHHHhhccee
Confidence            4799999999999999999999887777777765443 47999999999999999 68888776

>KOG0146 consensus RNA-binding protein ETR-3 (RRM superfamily) [RNA processing and modification]

Probab=97.47  E-value=0.00013  Score=66.24  Aligned_cols=63  Identities=24%  Similarity=0.342  Sum_probs=55.3

Q ss_pred             CCcEEEEeCCCCCCCHHHHHHHhccCCCceEEEEeecC--CcCceEEEEecCHHHHHHH-HhcCCC
Q 026156            4 GGYVAEVVGLSPNATEKDIHEFFSHCGDPVHVEIIRSG--ECGGTAYVTFSNAYALETA-VLLSGA   66 (242)
Q Consensus         4 ~~~tV~VsNLs~~~TE~dLrefFs~~G~I~~V~l~~~~--~~~~~AfV~F~~~~aA~tA-l~Lng~   66 (242)
                      +++++||+=|...-+|+|+|.+|..||.|++|.+.+..  ..+++|||.|.+.-++..| ..|+|.
T Consensus        18 ~drklfvgml~kqq~e~dvrrlf~pfG~~~e~tvlrg~dg~sKGCAFVKf~s~~eAqaAI~aLHgS   83 (371)
T KOG0146|consen   18 DDRKLFVGMLNKQQSEDDVRRLFQPFGNIEECTVLRGPDGNSKGCAFVKFSSHAEAQAAINALHGS   83 (371)
T ss_pred             cchhhhhhhhcccccHHHHHHHhcccCCcceeEEecCCCCCCCCceEEEeccchHHHHHHHHhccc
Confidence            45789999999999999999999999999999999753  3568999999999999999 466664

>PF11608 Limkain-b1: Limkain b1; InterPro: IPR024582 This entry represents a conserved domain found in limkain b1, which is a novel human autoantigen, localised to a subset of ABCD3 and PXF marked peroxisomes

Probab=97.38  E-value=0.00092  Score=51.03  Aligned_cols=66  Identities=24%  Similarity=0.368  Sum_probs=46.5

Q ss_pred             cEEEEeCCCCCCCHHHHH----HHhccCC-CceEEEEeecCCcCceEEEEecCHHHHHHH-HhcCCCeecCeeEEEEec
Q 026156            6 YVAEVVGLSPNATEKDIH----EFFSHCG-DPVHVEIIRSGECGGTAYVTFSNAYALETA-VLLSGATIVDQPVCIIRW   78 (242)
Q Consensus         6 ~tV~VsNLs~~~TE~dLr----efFs~~G-~I~~V~l~~~~~~~~~AfV~F~~~~aA~tA-l~Lng~~l~g~~I~V~~a   78 (242)
                      ..++|.|||.+..-..|+    .++..|| +|.+|.       ++.|.|.|.+++.|..| ..|+|...-|+.|.|...
T Consensus         3 s~L~V~NLP~~~d~~~I~~RL~qLsdNCGGkVl~v~-------~~tAilrF~~~~~A~RA~KRmegEdVfG~kI~v~~~   74 (90)
T PF11608_consen    3 SLLYVSNLPTNKDPSSIKNRLRQLSDNCGGKVLSVS-------GGTAILRFPNQEFAERAQKRMEGEDVFGNKISVSFS   74 (90)
T ss_dssp             EEEEEES--TTS-HHHHHHHHHHHHHTTT--EEE---------TT-EEEEESSHHHHHHHHHHHTT--SSSS--EEESS
T ss_pred             cEEEEecCCCCCCHHHHHHHHHHHhhccCCEEEEEe-------CCEEEEEeCCHHHHHHHHHhhcccccccceEEEEEc
Confidence            579999999999887765    5666896 555552       46899999999999999 799999999999999865

Limkain b1 may be a relatively common target of human autoantibodies reactive to cytoplasmic vesicle-like structures [].; PDB: 2DIU_A.

>KOG3152 consensus TBP-binding protein, activator of basal transcription (contains rrm motif) [Transcription]

Probab=97.07  E-value=0.00029  Score=63.45  Aligned_cols=66  Identities=18%  Similarity=0.274  Sum_probs=57.9

Q ss_pred             cEEEEeCCCCCCCHHHHHHHhccCCCceEEEEeecCCc--------C-------ceEEEEecCHHHHHHH-HhcCCCeec
Q 026156            6 YVAEVVGLSPNATEKDIHEFFSHCGDPVHVEIIRSGEC--------G-------GTAYVTFSNAYALETA-VLLSGATIV   69 (242)
Q Consensus         6 ~tV~VsNLs~~~TE~dLrefFs~~G~I~~V~l~~~~~~--------~-------~~AfV~F~~~~aA~tA-l~Lng~~l~   69 (242)
                      ..||++||||......||++|+.||.|-.|-|..+...        +       .-++|+|.+...|... .+|||..|+
T Consensus        75 GVvylS~IPp~m~~~rlReil~~yGeVGRvylqpE~~s~~~~r~~~~~n~~~~y~EGWvEF~~KrvAK~iAe~Lnn~~Ig  154 (278)
T KOG3152|consen   75 GVVYLSNIPPYMDPVRLREILSQYGEVGRVYLQPEDDSKRAARKRKGGNYKKLYSEGWVEFISKRVAKRIAELLNNTPIG  154 (278)
T ss_pred             eEEEeccCCCccCHHHHHHHHHhccccceEEecchhhHHHHHHhhcCCCccccchhHHHHHHHHHHHHHHHHHhCCCccC
Confidence            47999999999999999999999999999999875332        1       1589999999999887 899999999


Q ss_pred             Ce
Q 026156           70 DQ   71 (242)
Q Consensus        70 g~   71 (242)
                      |+
T Consensus       155 gk  156 (278)
T KOG3152|consen  155 GK  156 (278)
T ss_pred             CC
Confidence            86

>KOG1190 consensus Polypyrimidine tract-binding protein [RNA processing and modification]

Probab=97.04  E-value=0.0029  Score=60.48  Aligned_cols=72  Identities=19%  Similarity=0.242  Sum_probs=64.9

Q ss_pred             CcEEEEeCCCC-CCCHHHHHHHhccCCCceEEEEeecCCcCceEEEEecCHHHHHHH-HhcCCCeecCeeEEEEec
Q 026156            5 GYVAEVVGLSP-NATEKDIHEFFSHCGDPVHVEIIRSGECGGTAYVTFSNAYALETA-VLLSGATIVDQPVCIIRW   78 (242)
Q Consensus         5 ~~tV~VsNLs~-~~TE~dLrefFs~~G~I~~V~l~~~~~~~~~AfV~F~~~~aA~tA-l~Lng~~l~g~~I~V~~a   78 (242)
                      ...|-|+||.+ .+|.+-|-.+|+-||+|.+|+|+..+.  --|.|.+.|..-|+-| -.|+|..|-|+.|+|+..
T Consensus       297 n~vllvsnln~~~VT~d~LftlFgvYGdVqRVkil~nkk--d~ALIQmsd~~qAqLA~~hL~g~~l~gk~lrvt~S  370 (492)
T KOG1190|consen  297 NVVLLVSNLNEEAVTPDVLFTLFGVYGDVQRVKILYNKK--DNALIQMSDGQQAQLAMEHLEGHKLYGKKLRVTLS  370 (492)
T ss_pred             ceEEEEecCchhccchhHHHHHHhhhcceEEEEeeecCC--cceeeeecchhHHHHHHHHhhcceecCceEEEeec
Confidence            46899999966 589999999999999999999997653  4799999999999999 699999999999999865

>PF08952 DUF1866: Domain of unknown function (DUF1866) ; InterPro: IPR015047 This domain, found in synaptojanin, has no known function

Probab=97.02  E-value=0.0031  Score=52.53  Aligned_cols=74  Identities=20%  Similarity=0.231  Sum_probs=53.8

Q ss_pred             CCCCCcEEEEeCCCCC-----CCHH----HHHHHhccCCCceEEEEeecCCcCceEEEEecCHHHHHHHHhcCCCeecCe
Q 026156            1 MYAGGYVAEVVGLSPN-----ATEK----DIHEFFSHCGDPVHVEIIRSGECGGTAYVTFSNAYALETAVLLSGATIVDQ   71 (242)
Q Consensus         1 M~~~~~tV~VsNLs~~-----~TE~----dLrefFs~~G~I~~V~l~~~~~~~~~AfV~F~~~~aA~tAl~Lng~~l~g~   71 (242)
                      |-|-..||.|+=++|.     .-++    +|-+.|..||.+.-|++..+     .-+|+|.+-+.|-.|+.++|.+++|+
T Consensus        23 ~GPpDaTVvVsv~~~~~~e~~~Fdd~l~~~ll~~~~~~GevvLvRfv~~-----~mwVTF~dg~sALaals~dg~~v~g~   97 (146)
T PF08952_consen   23 QGPPDATVVVSVDSPSEDEDSSFDDNLMDELLQKFAQYGEVVLVRFVGD-----TMWVTFRDGQSALAALSLDGIQVNGR   97 (146)
T ss_dssp             ---TT-EEEEEECS-SCCCCHS--HHHHHHHHHHHHCCS-ECEEEEETT-----CEEEEESSCHHHHHHHHGCCSEETTE
T ss_pred             cCCCCceEEEEecCCCccccCcCCHHHHHHHHHHHHhCCceEEEEEeCC-----eEEEEECccHHHHHHHccCCcEECCE
Confidence            4455678888877722     2222    67778999999888887743     56999999999999999999999999


Q ss_pred             eEEEEecC
Q 026156           72 PVCIIRWG   79 (242)
Q Consensus        72 ~I~V~~a~   79 (242)
                      .|+|..-.
T Consensus        98 ~l~i~LKt  105 (146)
T PF08952_consen   98 TLKIRLKT  105 (146)
T ss_dssp             EEEEEE--
T ss_pred             EEEEEeCC
Confidence            99998653

; PDB: 1UFW_A 2DNR_A.

>KOG0106 consensus Alternative splicing factor SRp55/B52/SRp75 (RRM superfamily) [RNA processing and modification]

Probab=96.96  E-value=0.00064  Score=60.05  Aligned_cols=68  Identities=21%  Similarity=0.273  Sum_probs=60.8

Q ss_pred             CCcEEEEeCCCCCCCHHHHHHHhccCCCceEEEEeecCCcCceEEEEecCHHHHHHH-HhcCCCeecCeeEEEE
Q 026156            4 GGYVAEVVGLSPNATEKDIHEFFSHCGDPVHVEIIRSGECGGTAYVTFSNAYALETA-VLLSGATIVDQPVCII   76 (242)
Q Consensus         4 ~~~tV~VsNLs~~~TE~dLrefFs~~G~I~~V~l~~~~~~~~~AfV~F~~~~aA~tA-l~Lng~~l~g~~I~V~   76 (242)
                      +.+.+.|.|++..+...+|.++|+++|++.+..+.     ..+++|.|..+.++..| -.|+|..|.++.|.+.
T Consensus        98 s~~r~~~~~~~~r~~~qdl~d~~~~~g~~~~~~~~-----~~~~~v~Fs~~~da~ra~~~l~~~~~~~~~l~~~  166 (216)
T KOG0106|consen   98 THFRLIVRNLSLRVSWQDLKDHFRPAGEVTYVDAR-----RNFAFVEFSEQEDAKRALEKLDGKKLNGRRISVE  166 (216)
T ss_pred             ccceeeeccchhhhhHHHHhhhhcccCCCchhhhh-----ccccceeehhhhhhhhcchhccchhhcCceeeec
Confidence            45789999999999999999999999999766652     36899999999999999 6999999999999993

>KOG4210 consensus Nuclear localization sequence binding protein [Transcription]

Probab=96.95  E-value=0.00069  Score=62.11  Aligned_cols=76  Identities=24%  Similarity=0.219  Sum_probs=63.7

Q ss_pred             cEEE-EeCCCCCCCHHHHHHHhccCCCceEEEEeecCCc---CceEEEEecCHHHHHHHHhcCCCeecCeeEEEEecCCC
Q 026156            6 YVAE-VVGLSPNATEKDIHEFFSHCGDPVHVEIIRSGEC---GGTAYVTFSNAYALETAVLLSGATIVDQPVCIIRWGEY   81 (242)
Q Consensus         6 ~tV~-VsNLs~~~TE~dLrefFs~~G~I~~V~l~~~~~~---~~~AfV~F~~~~aA~tAl~Lng~~l~g~~I~V~~a~~~   81 (242)
                      .+++ |+||+..+++++|+++|..||.|..+++..+.+.   .+++||.|........++..+...+.++++.+....+.
T Consensus       185 ~~~~~~~~~~f~~~~d~~~~~~~~~~~i~~~r~~~~~~s~~~kg~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  264 (285)
T KOG4210|consen  185 DTIFFVGELDFSLTRDDLKEHFVSSGEITSVRLPTDEESGDSKGFAYVDFSAGNSKKLALNDQTRSIGGRPLRLEEDEPR  264 (285)
T ss_pred             ccceeecccccccchHHHhhhccCcCcceeeccCCCCCccchhhhhhhhhhhchhHHHHhhcccCcccCcccccccCCCC
Confidence            4566 9999999999999999999999999999876543   46999999999888888655678888988888755433

>KOG4206 consensus Spliceosomal protein snRNP-U1A/U2B [RNA processing and modification]

Probab=96.88  E-value=0.0045  Score=54.76  Aligned_cols=76  Identities=16%  Similarity=0.219  Sum_probs=64.0

Q ss_pred             CCCCCcEEEEeCCCCCCCHHHHHHHhccCCCceEEEEeecCCcCceEEEEecCHHHHHHH-HhcCCCeec-CeeEEEEec
Q 026156            1 MYAGGYVAEVVGLSPNATEKDIHEFFSHCGDPVHVEIIRSGECGGTAYVTFSNAYALETA-VLLSGATIV-DQPVCIIRW   78 (242)
Q Consensus         1 M~~~~~tV~VsNLs~~~TE~dLrefFs~~G~I~~V~l~~~~~~~~~AfV~F~~~~aA~tA-l~Lng~~l~-g~~I~V~~a   78 (242)
                      |.+-..++++.|||..++.+.+...|..|.--..|+++..  .+..|||+|.+...+..| ..|.|..|- ...+.|+.+
T Consensus       142 ~~ppn~ilf~~niP~es~~e~l~~lf~qf~g~keir~i~~--~~~iAfve~~~d~~a~~a~~~lq~~~it~~~~m~i~~a  219 (221)
T KOG4206|consen  142 MAPPNNILFLTNIPSESESEMLSDLFEQFPGFKEIRLIPP--RSGIAFVEFLSDRQASAAQQALQGFKITKKNTMQITFA  219 (221)
T ss_pred             CCCCceEEEEecCCcchhHHHHHHHHhhCcccceeEeccC--CCceeEEecchhhhhHHHhhhhccceeccCceEEeccc
Confidence            4566689999999999999999999999998999999853  246999999999998888 688888776 677777643

>COG5175 MOT2 Transcriptional repressor [Transcription]

Probab=96.88  E-value=0.0021  Score=60.15  Aligned_cols=70  Identities=16%  Similarity=0.376  Sum_probs=57.9

Q ss_pred             EEEEeCCCCCCCHHH------HHHHhccCCCceEEEEeecC---C-cCc--eEEEEecCHHHHHHH-HhcCCCeecCeeE
Q 026156            7 VAEVVGLSPNATEKD------IHEFFSHCGDPVHVEIIRSG---E-CGG--TAYVTFSNAYALETA-VLLSGATIVDQPV   73 (242)
Q Consensus         7 tV~VsNLs~~~TE~d------LrefFs~~G~I~~V~l~~~~---~-~~~--~AfV~F~~~~aA~tA-l~Lng~~l~g~~I   73 (242)
                      -|||-+|+|.+-.++      -.+||++||+|..|-+-+..   + ...  -.||+|...++|.++ ...+|..++|+.|
T Consensus       116 LvYVigi~pkva~Ee~~~vLk~~eyFGQyGkI~KIvvNkkt~s~nst~~h~gvYITy~~kedAarcIa~vDgs~~DGr~l  195 (480)
T COG5175         116 LVYVIGIPPKVADEEVAPVLKRHEYFGQYGKIKKIVVNKKTSSLNSTASHAGVYITYSTKEDAARCIAEVDGSLLDGRVL  195 (480)
T ss_pred             eeEEecCCCCCCcccccccccchhhhhhccceeEEEecccccccccccccceEEEEecchHHHHHHHHHhccccccCceE
Confidence            489999999987777      24899999999999887542   1 112  349999999999999 6899999999999


Q ss_pred             EEE
Q 026156           74 CII   76 (242)
Q Consensus        74 ~V~   76 (242)
                      +.+
T Consensus       196 kat  198 (480)
T COG5175         196 KAT  198 (480)
T ss_pred             eee
Confidence            986

>PF04059 RRM_2: RNA recognition motif 2; InterPro: IPR007201 This RNA recognition motif 2 is found in Meiosis protein mei2

Probab=96.81  E-value=0.012  Score=45.92  Aligned_cols=64  Identities=13%  Similarity=0.071  Sum_probs=53.0

Q ss_pred             cEEEEeCCCCCCCHHHHHHHhc--cCCCceEEEEeecCC---cCceEEEEecCHHHHHHH-HhcCCCeec
Q 026156            6 YVAEVVGLSPNATEKDIHEFFS--HCGDPVHVEIIRSGE---CGGTAYVTFSNAYALETA-VLLSGATIV   69 (242)
Q Consensus         6 ~tV~VsNLs~~~TE~dLrefFs--~~G~I~~V~l~~~~~---~~~~AfV~F~~~~aA~tA-l~Lng~~l~   69 (242)
                      +||-|.|||...|.++|.+.+.  +.|..--+-|+-|-.   ..|+|||.|.+++.+..- ..++|..+.
T Consensus         2 TTvMirNIPn~~t~~~L~~~l~~~~~g~yDF~YLPiDf~~~~N~GYAFVNf~~~~~~~~F~~~f~g~~w~   71 (97)
T PF04059_consen    2 TTVMIRNIPNKYTQEMLIQILDEHFKGKYDFFYLPIDFKNKCNLGYAFVNFTSPQAAIRFYKAFNGKKWP   71 (97)
T ss_pred             eeEEEecCCCCCCHHHHHHHHHHhccCcceEEEeeeeccCCCceEEEEEEcCCHHHHHHHHHHHcCCccc
Confidence            5899999999999999998874  457777777776633   247999999999999988 788988774

It is found C-terminal to the RNA-binding region RNP-1 (IPR000504 from INTERPRO).

>KOG4307 consensus RNA binding protein RBM12/SWAN [General function prediction only]

Probab=96.59  E-value=0.0085  Score=60.58  Aligned_cols=74  Identities=24%  Similarity=0.315  Sum_probs=62.1

Q ss_pred             CCCcEEEEeCCCCCCCHHHHHHHhccCCCc-eEEEEeecCC--cCceEEEEecCHHHHHHH-HhcCCCeecCeeEEEE
Q 026156            3 AGGYVAEVVGLSPNATEKDIHEFFSHCGDP-VHVEIIRSGE--CGGTAYVTFSNAYALETA-VLLSGATIVDQPVCII   76 (242)
Q Consensus         3 ~~~~tV~VsNLs~~~TE~dLrefFs~~G~I-~~V~l~~~~~--~~~~AfV~F~~~~aA~tA-l~Lng~~l~g~~I~V~   76 (242)
                      ++.+.|-+.|+|..++-+||-+||+.|-.+ -+|.+.+.++  ..+-|-|-|++++.|..| .-|++..|..+.|.+.
T Consensus       865 pGp~V~~~~n~Pf~v~l~dI~~FF~dY~~~p~sI~~r~nd~G~pTGe~mvAfes~~eAr~A~~dl~~~~i~nr~V~l~  942 (944)
T KOG4307|consen  865 PGPRVLSCNNFPFDVTLEDIVEFFNDYEPDPNSIRIRRNDDGVPTGECMVAFESQEEARRASMDLDGQKIRNRVVSLR  942 (944)
T ss_pred             CCCeEEEecCCCccccHHHHHHHhcccccCCCceeEeecCCCCcccceeEeecCHHHHHhhhhccccCcccceeEEEE
Confidence            344688999999999999999999999766 4555554332  457999999999999999 8999999999998875

>KOG0120 consensus Splicing factor U2AF, large subunit (RRM superfamily) [RNA processing and modification]

Probab=96.45  E-value=0.0034  Score=61.58  Aligned_cols=79  Identities=18%  Similarity=0.226  Sum_probs=69.9

Q ss_pred             CcEEEEeCCCCCCCHHHHHHHhccCCCceEEEEeecCC---cCceEEEEecCHHHHHHH-HhcCCCeecCeeEEEEecCC
Q 026156            5 GYVAEVVGLSPNATEKDIHEFFSHCGDPVHVEIIRSGE---CGGTAYVTFSNAYALETA-VLLSGATIVDQPVCIIRWGE   80 (242)
Q Consensus         5 ~~tV~VsNLs~~~TE~dLrefFs~~G~I~~V~l~~~~~---~~~~AfV~F~~~~aA~tA-l~Lng~~l~g~~I~V~~a~~   80 (242)
                      ...++|+||+...++.+++|...-||.+...++..+..   .++|||.+|.++.-...| -.|||..+++..+.|+.+..
T Consensus       289 ~~ki~v~~lp~~l~~~q~~Ell~~fg~lk~f~lv~d~~~g~skg~af~ey~dpsvtd~A~agLnGm~lgd~~lvvq~A~~  368 (500)
T KOG0120|consen  289 PNKIFVGGLPLYLTEDQVKELLDSFGPLKAFRLVKDSATGNSKGFAFCEYCDPSVTDQAIAGLNGMQLGDKKLVVQRAIV  368 (500)
T ss_pred             cchhhhccCcCccCHHHHHHHHHhcccchhheeecccccccccceeeeeeeCCcchhhhhcccchhhhcCceeEeehhhc
Confidence            36799999999999999999999999999999997644   457999999999999999 69999999999999998754


Q ss_pred             CCC
Q 026156           81 YTD   83 (242)
Q Consensus        81 ~~~   83 (242)
                      -..
T Consensus       369 g~~  371 (500)
T KOG0120|consen  369 GAS  371 (500)
T ss_pred             cch
Confidence            333

>KOG0226 consensus RNA-binding proteins [General function prediction only]

Probab=96.18  E-value=0.0065  Score=54.93  Aligned_cols=73  Identities=14%  Similarity=0.227  Sum_probs=63.0

Q ss_pred             CCcEEEEeCCCCCCCHHHHHHHhccCCCceEEEEeecCC---cCceEEEEecCHHHHHHH-HhcCCCeecCeeEEEE
Q 026156            4 GGYVAEVVGLSPNATEKDIHEFFSHCGDPVHVEIIRSGE---CGGTAYVTFSNAYALETA-VLLSGATIVDQPVCII   76 (242)
Q Consensus         4 ~~~tV~VsNLs~~~TE~dLrefFs~~G~I~~V~l~~~~~---~~~~AfV~F~~~~aA~tA-l~Lng~~l~g~~I~V~   76 (242)
                      .+..||++.|..+++++.|-.-|..|=....-+++++..   +.+|+||.|.++.++..| ..+||..++.++|...
T Consensus       189 ~DfRIfcgdlgNevnd~vl~raf~Kfpsf~~akviRdkRTgKSkgygfVSf~~pad~~rAmrem~gkyVgsrpiklR  265 (290)
T KOG0226|consen  189 DDFRIFCGDLGNEVNDDVLARAFKKFPSFQKAKVIRDKRTGKSKGYGFVSFRDPADYVRAMREMNGKYVGSRPIKLR  265 (290)
T ss_pred             ccceeecccccccccHHHHHHHHHhccchhhccccccccccccccceeeeecCHHHHHHHHHhhcccccccchhHhh
Confidence            357899999999999999999999887777777777643   457999999999999999 6999999999888775

>KOG0129 consensus Predicted RNA-binding protein (RRM superfamily) [Translation, ribosomal structure and biogenesis]

Probab=96.11  E-value=0.016  Score=56.66  Aligned_cols=54  Identities=20%  Similarity=0.280  Sum_probs=43.4

Q ss_pred             cEEEEeCCCCCCCHHHHHHHhccCCCceEEEEeecCC------cCc---eEEEEecCHHHHHHH
Q 026156            6 YVAEVVGLSPNATEKDIHEFFSHCGDPVHVEIIRSGE------CGG---TAYVTFSNAYALETA   60 (242)
Q Consensus         6 ~tV~VsNLs~~~TE~dLrefFs~~G~I~~V~l~~~~~------~~~---~AfV~F~~~~aA~tA   60 (242)
                      +.|||++||+.++|+.|..+|..||.+ .|+.....+      ..+   |+|+.|+++..+..-
T Consensus       260 ~KVFvGGlp~dise~~i~~~F~~FGs~-~VdWP~k~~~~~~~ppkGs~~YvflvFe~E~sV~~L  322 (520)
T KOG0129|consen  260 RKVFVGGLPWDITEAQINASFGQFGSV-KVDWPGKANSRGRAPPKGSYGYVFLVFEDERSVQSL  322 (520)
T ss_pred             cceeecCCCccccHHHHHhhcccccce-EeecCCCccccccCCCCCcccEEEEEecchHHHHHH
Confidence            579999999999999999999999985 455553211      234   999999999888764

>PLN03120 nucleic acid binding protein; Provisional

Probab=95.96  E-value=0.0059  Score=55.38  Aligned_cols=41  Identities=22%  Similarity=0.300  Sum_probs=28.7

Q ss_pred             hcCCcHHHHHHHHhhhhccccchhhhhHHHHHHHhhhhhchhHH
Q 026156          147 SYGLSASAAAKVAELSNRIGLTDKINASMEAIKSVDEKYHVSDV  190 (242)
Q Consensus       147 kh~~ss~~~~~v~~~d~k~g~t~k~~~g~~~~~~vD~k~~vs~~  190 (242)
                      =+-|+..+..+...||+|+|||.++   ..++.++|+|||+|||
T Consensus       117 Gy~l~~dA~~kAk~fDekH~~ss~a---~a~v~~~d~k~gltek  157 (260)
T PLN03120        117 GFILGKDAVNKAKAFDEKHQLTSTA---SAKVASLDKKIGLSEK  157 (260)
T ss_pred             hhhhhHHHHHHHHHHHHhhchHHHH---HHHHHhhhhhcCcccc
Confidence            3446667777777777777777664   3457777777777776

>KOG1855 consensus Predicted RNA-binding protein [General function prediction only]

Probab=95.93  E-value=0.0054  Score=58.85  Aligned_cols=61  Identities=18%  Similarity=0.219  Sum_probs=51.1

Q ss_pred             CcEEEEeCCCCCCCHHHHHHHhccCCCceEEEEeecC---C-----c--------CceEEEEecCHHHHHHHHhcCC
Q 026156            5 GYVAEVVGLSPNATEKDIHEFFSHCGDPVHVEIIRSG---E-----C--------GGTAYVTFSNAYALETAVLLSG   65 (242)
Q Consensus         5 ~~tV~VsNLs~~~TE~dLrefFs~~G~I~~V~l~~~~---~-----~--------~~~AfV~F~~~~aA~tAl~Lng   65 (242)
                      .+||.+.|||.+-.-+.|.++|+.||.|+.|+|+.-+   +     .        .-.|+|+|+..++|.+|..|++
T Consensus       231 srtivaenLP~Dh~~enl~kiFg~~G~IksIRIckPgaip~d~r~~~~~~~~~~tk~~AlvEye~~~~A~KA~e~~~  307 (484)
T KOG1855|consen  231 SRTIVAENLPLDHSYENLSKIFGTVGSIKSIRICKPGAIPEDVRGFPKKYFELQTKECALVEYEEVEAARKARELLN  307 (484)
T ss_pred             cceEEEecCCcchHHHHHHHHhhcccceeeeeecCCCCCCcccccCCccchhhhhhhhhhhhhhhhHHHHHHHHhhc
Confidence            3799999999999999999999999999999998541   1     1        1279999999999999955443

>KOG1548 consensus Transcription elongation factor TAT-SF1 [Transcription]

Probab=95.65  E-value=0.041  Score=51.67  Aligned_cols=77  Identities=14%  Similarity=0.208  Sum_probs=61.9

Q ss_pred             CCcEEEEeCCC-C---CCC-------HHHHHHHhccCCCceEEEEeecCCcCceEEEEecCHHHHHHH-HhcCCCeecCe
Q 026156            4 GGYVAEVVGLS-P---NAT-------EKDIHEFFSHCGDPVHVEIIRSGECGGTAYVTFSNAYALETA-VLLSGATIVDQ   71 (242)
Q Consensus         4 ~~~tV~VsNLs-~---~~T-------E~dLrefFs~~G~I~~V~l~~~~~~~~~AfV~F~~~~aA~tA-l~Lng~~l~g~   71 (242)
                      ..+||.++||= |   ..+       +++|++=-+.||.|.+|.+.. ..+.+.+.|.|.+++.|..+ ..|+|.-++||
T Consensus       264 ~~~tVi~kn~Ftp~~~~~~~~l~~dlkedl~eec~K~G~v~~vvv~d-~hPdGvvtV~f~n~eeA~~ciq~m~GR~fdgR  342 (382)
T KOG1548|consen  264 ADRTVILKNMFTPEDFEKNPDLLNDLKEDLTEECEKFGQVRKVVVYD-RHPDGVVTVSFRNNEEADQCIQTMDGRWFDGR  342 (382)
T ss_pred             CCcEEEeeecCCHHHhccCHHHHHHHHHHHHHHHHHhCCcceEEEec-cCCCceeEEEeCChHHHHHHHHHhcCeeecce
Confidence            35799999983 2   334       345556688999999998873 33457999999999999999 79999999999


Q ss_pred             eEEEEecCCC
Q 026156           72 PVCIIRWGEY   81 (242)
Q Consensus        72 ~I~V~~a~~~   81 (242)
                      .|....|...
T Consensus       343 ql~A~i~DG~  352 (382)
T KOG1548|consen  343 QLTASIWDGK  352 (382)
T ss_pred             EEEEEEeCCc
Confidence            9999988643

>KOG1190 consensus Polypyrimidine tract-binding protein [RNA processing and modification]

Probab=95.52  E-value=0.035  Score=53.22  Aligned_cols=73  Identities=12%  Similarity=0.113  Sum_probs=57.8

Q ss_pred             CcEEEEeCCCCCCCHHHHHHHhccCCCceEEEEeecCCcCceEEEEecCHHHHHHH-HhcCCCeecCe-eEEEEec
Q 026156            5 GYVAEVVGLSPNATEKDIHEFFSHCGDPVHVEIIRSGECGGTAYVTFSNAYALETA-VLLSGATIVDQ-PVCIIRW   78 (242)
Q Consensus         5 ~~tV~VsNLs~~~TE~dLrefFs~~G~I~~V~l~~~~~~~~~AfV~F~~~~aA~tA-l~Lng~~l~g~-~I~V~~a   78 (242)
                      ..|++.+|||++++|++|++.|..-|-..+--...-+ ..+.|++.+.+.+.|-.| ..+.++.+++. .++|+..
T Consensus       414 satlHlsnip~svsee~lk~~f~~~g~~vkafkff~k-d~kmal~q~~sveeA~~ali~~hnh~lgen~hlRvSFS  488 (492)
T KOG1190|consen  414 SATLHLSNIPPSVSEEDLKNLFQEPGGQVKAFKFFQK-DRKMALPQLESVEEAIQALIDLHNHYLGENHHLRVSFS  488 (492)
T ss_pred             hhheeeccCCcccchhHHHHhhhcCCceEEeeeecCC-CcceeecccCChhHhhhhccccccccCCCCceEEEEee
Confidence            3589999999999999999999887765444333222 246999999999999999 68899999876 6787643

>KOG0129 consensus Predicted RNA-binding protein (RRM superfamily) [Translation, ribosomal structure and biogenesis]

Probab=95.43  E-value=0.031  Score=54.74  Aligned_cols=73  Identities=26%  Similarity=0.213  Sum_probs=60.9

Q ss_pred             cEEEEeCCCCCCCHHHHHHHhc-cCCCceEEEEeecCC---cCceEEEEecCHHHHHHHH-----hcCCCeecCeeEEEE
Q 026156            6 YVAEVVGLSPNATEKDIHEFFS-HCGDPVHVEIIRSGE---CGGTAYVTFSNAYALETAV-----LLSGATIVDQPVCII   76 (242)
Q Consensus         6 ~tV~VsNLs~~~TE~dLrefFs-~~G~I~~V~l~~~~~---~~~~AfV~F~~~~aA~tAl-----~Lng~~l~g~~I~V~   76 (242)
                      +||||++||--++-++|-.+|. -||.|.++-|=.|.+   ..+-+-|+|.+.++..+|+     .|+...|. ++|.|.
T Consensus       371 rTVFVGgvprpl~A~eLA~imd~lyGgV~yaGIDtD~k~KYPkGaGRVtFsnqqsYi~AIsarFvql~h~d~~-KRVEIk  449 (520)
T KOG0129|consen  371 RTVFVGGLPRPLTAEELAMIMEDLFGGVLYVGIDTDPKLKYPKGAGRVTFSNQQAYIKAISARFVQLDHTDID-KRVEIK  449 (520)
T ss_pred             ceEEecCCCCcchHHHHHHHHHHhcCceEEEEeccCcccCCCCCcceeeecccHHHHHHHhhheEEEeccccc-eeeeec
Confidence            7999999999999999999998 899999999987755   3478999999999888873     55655554 478888


Q ss_pred             ecC
Q 026156           77 RWG   79 (242)
Q Consensus        77 ~a~   79 (242)
                      |+-
T Consensus       450 PYv  452 (520)
T KOG0129|consen  450 PYV  452 (520)
T ss_pred             cee
Confidence            764

>KOG1365 consensus RNA-binding protein Fusilli, contains RRM domain [RNA processing and modification; General function prediction only]

Probab=95.41  E-value=0.011  Score=56.17  Aligned_cols=70  Identities=26%  Similarity=0.390  Sum_probs=57.0

Q ss_pred             EEEEeCCCCCCCHHHHHHHhc-cC---CCceEEEEee--cCCcCceEEEEecCHHHHHHHHhcCCCeecCeeEEEE
Q 026156            7 VAEVVGLSPNATEKDIHEFFS-HC---GDPVHVEIIR--SGECGGTAYVTFSNAYALETAVLLSGATIVDQPVCII   76 (242)
Q Consensus         7 tV~VsNLs~~~TE~dLrefFs-~~---G~I~~V~l~~--~~~~~~~AfV~F~~~~aA~tAl~Lng~~l~g~~I~V~   76 (242)
                      .|...+||+++++.|+.+||. .|   |..+.|..+.  |+...+-|||.|..++.|+.||.-+...|+-+.|.+-
T Consensus       163 ivRmRGLPfdat~~dVv~FF~~~cpv~~g~egvLFV~rpdgrpTGdAFvlfa~ee~aq~aL~khrq~iGqRYIElF  238 (508)
T KOG1365|consen  163 IVRMRGLPFDATALDVVEFFGPPCPVTGGTEGVLFVTRPDGRPTGDAFVLFACEEDAQFALRKHRQNIGQRYIELF  238 (508)
T ss_pred             EEEecCCCCCcchHHHHHhcCCCCcccCCccceEEEECCCCCcccceEEEecCHHHHHHHHHHHHHHHhHHHHHHH
Confidence            477789999999999999996 22   3456666664  3344689999999999999999999999998888774

>KOG0128 consensus RNA-binding protein SART3 (RRM superfamily) [RNA processing and modification]

Probab=95.28  E-value=0.0017  Score=66.43  Aligned_cols=67  Identities=28%  Similarity=0.353  Sum_probs=55.0

Q ss_pred             cEEEEeCCCCCCCHHHHHHHhccCCCceEEEEe---ecCCcCceEEEEecCHHHHHHHHhcCCCeecCee
Q 026156            6 YVAEVVGLSPNATEKDIHEFFSHCGDPVHVEII---RSGECGGTAYVTFSNAYALETAVLLSGATIVDQP   72 (242)
Q Consensus         6 ~tV~VsNLs~~~TE~dLrefFs~~G~I~~V~l~---~~~~~~~~AfV~F~~~~aA~tAl~Lng~~l~g~~   72 (242)
                      .++||+||++.+.+.+|+++|+++|.|..+.+.   ..+...+.||+.|.++..+..|+.++...+-|+.
T Consensus       668 ~~~fvsnl~~~~~~~dl~~~~~~~~~~e~vqi~~h~n~~~~rG~~Y~~F~~~~~~~aaV~f~d~~~~gK~  737 (881)
T KOG0128|consen  668 IKIFVSNLSPKMSEEDLSERFSPSGTIEVVQIVIHKNEKRFRGKAYVEFLKPEHAGAAVAFRDSCFFGKI  737 (881)
T ss_pred             HHHHHhhcchhhcCchhhhhcCccchhhhHHHHHHhhccccccceeeEeecCCchhhhhhhhhhhhhhhh
Confidence            478999999999999999999999999888776   1233357999999999999999877666655543

>KOG0120 consensus Splicing factor U2AF, large subunit (RRM superfamily) [RNA processing and modification]

Probab=94.70  E-value=0.091  Score=51.78  Aligned_cols=58  Identities=22%  Similarity=0.335  Sum_probs=48.2

Q ss_pred             HHHHHhccCCCceEEEEeec-CC-----cCceEEEEecCHHHHHHH-HhcCCCeecCeeEEEEec
Q 026156           21 DIHEFFSHCGDPVHVEIIRS-GE-----CGGTAYVTFSNAYALETA-VLLSGATIVDQPVCIIRW   78 (242)
Q Consensus        21 dLrefFs~~G~I~~V~l~~~-~~-----~~~~AfV~F~~~~aA~tA-l~Lng~~l~g~~I~V~~a   78 (242)
                      +++.=++.||.|.+|++.++ .+     ..+..||+|.+.++++.| ..|+|..+.|+.|....+
T Consensus       425 dvr~ec~k~g~v~~v~ipr~~~~~~~~~G~GkVFVefas~ed~qrA~~~L~GrKF~nRtVvtsYy  489 (500)
T KOG0120|consen  425 DVRTECAKFGAVRSVEIPRPYPDENPVPGTGKVFVEFADTEDSQRAMEELTGRKFANRTVVASYY  489 (500)
T ss_pred             HHHHHhcccCceeEEecCCCCCCCCcCCCcccEEEEecChHHHHHHHHHccCceeCCcEEEEEec
Confidence            34445789999999999976 22     136899999999999999 799999999998887754

>KOG1996 consensus mRNA splicing factor [RNA processing and modification]

Probab=94.48  E-value=0.1  Score=48.30  Aligned_cols=60  Identities=20%  Similarity=0.150  Sum_probs=49.6

Q ss_pred             HHHHHHHhccCCCceEEEEeecCC----cCceEEEEecCHHHHHHH-HhcCCCeecCeeEEEEec
Q 026156           19 EKDIHEFFSHCGDPVHVEIIRSGE----CGGTAYVTFSNAYALETA-VLLSGATIVDQPVCIIRW   78 (242)
Q Consensus        19 E~dLrefFs~~G~I~~V~l~~~~~----~~~~AfV~F~~~~aA~tA-l~Lng~~l~g~~I~V~~a   78 (242)
                      |.++++-..+||+|..|.|.....    ..---||+|+..+.+-+| +.|||..++|+.+..+.+
T Consensus       300 ede~keEceKyg~V~~viifeip~~p~deavRiFveF~r~e~aiKA~VdlnGRyFGGr~v~A~Fy  364 (378)
T KOG1996|consen  300 EDETKEECEKYGKVGNVIIFEIPSQPEDEAVRIFVEFERVESAIKAVVDLNGRYFGGRVVSACFY  364 (378)
T ss_pred             HHHHHHHHHhhcceeeEEEEecCCCccchhheeeeeeccHHHHHHHHHhcCCceecceeeeheec
Confidence            456777789999999999886532    123689999999999999 799999999999887754

>KOG4285 consensus Mitotic phosphoprotein [Cell cycle control, cell division, chromosome partitioning]

Probab=94.32  E-value=0.18  Score=46.85  Aligned_cols=73  Identities=18%  Similarity=0.260  Sum_probs=57.6

Q ss_pred             CcEEEEeCCCCCCCHHHHHHHhccCCCceEEEEeecCCcCceEEEEecCHHHHHHHHhcCCCeecCee-EEEEecCCC
Q 026156            5 GYVAEVVGLSPNATEKDIHEFFSHCGDPVHVEIIRSGECGGTAYVTFSNAYALETAVLLSGATIVDQP-VCIIRWGEY   81 (242)
Q Consensus         5 ~~tV~VsNLs~~~TE~dLrefFs~~G~I~~V~l~~~~~~~~~AfV~F~~~~aA~tAl~Lng~~l~g~~-I~V~~a~~~   81 (242)
                      +.-|.|=+.+|.-. .-|-..|+.||.|.+....+   ...+-+|.|.+...+++||..||..|+|.. |-|.+|.+.
T Consensus       197 D~WVTVfGFppg~~-s~vL~~F~~cG~Vvkhv~~~---ngNwMhirYssr~~A~KALskng~ii~g~vmiGVkpCtDk  270 (350)
T KOG4285|consen  197 DTWVTVFGFPPGQV-SIVLNLFSRCGEVVKHVTPS---NGNWMHIRYSSRTHAQKALSKNGTIIDGDVMIGVKPCTDK  270 (350)
T ss_pred             cceEEEeccCccch-hHHHHHHHhhCeeeeeecCC---CCceEEEEecchhHHHHhhhhcCeeeccceEEeeeecCCH
Confidence            34677888888644 45667899999998877653   245999999999999999999999998765 677777553

>KOG4307 consensus RNA binding protein RBM12/SWAN [General function prediction only]

Probab=94.09  E-value=0.031  Score=56.73  Aligned_cols=79  Identities=16%  Similarity=0.052  Sum_probs=65.3

Q ss_pred             CcEEEEeCCCCCCCHHHHHHHhccCCCceE-EEEeecCC--cCceEEEEecCHHHHHHH-HhcCCCeecCeeEEEEecCC
Q 026156            5 GYVAEVVGLSPNATEKDIHEFFSHCGDPVH-VEIIRSGE--CGGTAYVTFSNAYALETA-VLLSGATIVDQPVCIIRWGE   80 (242)
Q Consensus         5 ~~tV~VsNLs~~~TE~dLrefFs~~G~I~~-V~l~~~~~--~~~~AfV~F~~~~aA~tA-l~Lng~~l~g~~I~V~~a~~   80 (242)
                      +..|||..||..+++.++-+||+..-.|++ |.|.+...  ....|||.|.++.+..+| +.-+-..++.+.|+|.+..+
T Consensus       434 g~~lyv~~lP~~t~~~~~v~~f~~~~~Ved~I~lt~~P~~~~~~~afv~F~~~~a~~~a~~~~~k~y~G~r~irv~si~~  513 (944)
T KOG4307|consen  434 GGALYVFQLPVMTPIVPPVNKFMGAAAVEDFIELTRLPTDLLRPAAFVAFIHPTAPLTASSVKTKFYPGHRIIRVDSIAD  513 (944)
T ss_pred             cceEEeccCCccccccchhhhhhhhhhhhheeEeccCCcccccchhhheeccccccchhhhcccccccCceEEEeechhh
Confidence            357999999999999999999999888888 77775532  236899999999999999 56677778899999987665


Q ss_pred             CCC
Q 026156           81 YTD   83 (242)
Q Consensus        81 ~~~   83 (242)
                      +..
T Consensus       514 ~~m  516 (944)
T KOG4307|consen  514 YAM  516 (944)
T ss_pred             HHH
Confidence            543

>KOG1365 consensus RNA-binding protein Fusilli, contains RRM domain [RNA processing and modification; General function prediction only]

Probab=94.02  E-value=0.058  Score=51.49  Aligned_cols=73  Identities=21%  Similarity=0.273  Sum_probs=58.0

Q ss_pred             cEEEEeCCCCCCCHHHHHHHhccCC-CceE--EEEeec--CCcCceEEEEecCHHHHHHH-HhcCCCeecCeeEEEEec
Q 026156            6 YVAEVVGLSPNATEKDIHEFFSHCG-DPVH--VEIIRS--GECGGTAYVTFSNAYALETA-VLLSGATIVDQPVCIIRW   78 (242)
Q Consensus         6 ~tV~VsNLs~~~TE~dLrefFs~~G-~I~~--V~l~~~--~~~~~~AfV~F~~~~aA~tA-l~Lng~~l~g~~I~V~~a   78 (242)
                      .+|.+.+||+.++.+||-+||..|. .|..  |.+.-+  +..++-|||.|.+.+.+..| ..-..+....+.|.|-++
T Consensus       281 dcvRLRGLPy~AtvEdIL~FlgdFa~~i~f~gVHmv~N~qGrPSGeAFIqm~nae~a~aaaqk~hk~~mk~RYiEvfp~  359 (508)
T KOG1365|consen  281 DCVRLRGLPYEATVEDILDFLGDFATDIRFQGVHMVLNGQGRPSGEAFIQMRNAERARAAAQKCHKKLMKSRYIEVFPC  359 (508)
T ss_pred             CeeEecCCChhhhHHHHHHHHHHHhhhcccceeEEEEcCCCCcChhhhhhhhhhHHHHHHHHHHHHhhcccceEEEeec
Confidence            4799999999999999999998765 3433  555543  44578999999999999998 566666667899999765

>KOG0112 consensus Large RNA-binding protein (RRM superfamily) [General function prediction only]

Probab=93.65  E-value=0.016  Score=60.01  Aligned_cols=72  Identities=22%  Similarity=0.168  Sum_probs=61.1

Q ss_pred             CcEEEEeCCCCCCCHHHHHHHhccCCCceEEEEeec--CCcCceEEEEecCHHHHHHH-HhcCCCeecCeeEEEE
Q 026156            5 GYVAEVVGLSPNATEKDIHEFFSHCGDPVHVEIIRS--GECGGTAYVTFSNAYALETA-VLLSGATIVDQPVCII   76 (242)
Q Consensus         5 ~~tV~VsNLs~~~TE~dLrefFs~~G~I~~V~l~~~--~~~~~~AfV~F~~~~aA~tA-l~Lng~~l~g~~I~V~   76 (242)
                      .+|+|++||.+.+++.+|+..|..+|+|.+|.|..-  +....++||.|.+-.++..| ..+.+..|+...+.+.
T Consensus       372 trTLf~Gnl~~kl~eseiR~af~e~gkve~VDiKtP~~~~esa~~f~~~~n~dmtp~ak~e~s~~~I~~g~~r~g  446 (975)
T KOG0112|consen  372 TRTLFLGNLDSKLTESEIRPAFDESGKVEEVDIKTPHIKTESAYAFVSLLNTDMTPSAKFEESGPLIGNGTHRIG  446 (975)
T ss_pred             hhhhhhcCcccchhhhhhhhhhhhhccccccccccCCCCcccchhhhhhhccccCcccchhhcCCccccCccccc
Confidence            479999999999999999999999999999999854  22346999999999999999 7888888865555543

>KOG1456 consensus Heterogeneous nuclear ribonucleoprotein L (contains RRM repeats) [RNA processing and modification]

Probab=93.59  E-value=0.36  Score=46.16  Aligned_cols=73  Identities=25%  Similarity=0.372  Sum_probs=62.6

Q ss_pred             CcEEEEeCCCC-CCCHHHHHHHhccCCCceEEEEeecCCcCceEEEEecCHHHHHHH-HhcCCCeecCeeEEEEecC
Q 026156            5 GYVAEVVGLSP-NATEKDIHEFFSHCGDPVHVEIIRSGECGGTAYVTFSNAYALETA-VLLSGATIVDQPVCIIRWG   79 (242)
Q Consensus         5 ~~tV~VsNLs~-~~TE~dLrefFs~~G~I~~V~l~~~~~~~~~AfV~F~~~~aA~tA-l~Lng~~l~g~~I~V~~a~   79 (242)
                      ++.+-|-+|.. ...-+.|-.+|..||.|+.|+.++..  .+.|.|+.-|+.+++.| ..||+..+-|..|.|....
T Consensus       287 g~VmMVyGLdh~k~N~drlFNl~ClYGNV~rvkFmkTk--~gtamVemgd~~aver~v~hLnn~~lfG~kl~v~~Sk  361 (494)
T KOG1456|consen  287 GCVMMVYGLDHGKMNCDRLFNLFCLYGNVERVKFMKTK--PGTAMVEMGDAYAVERAVTHLNNIPLFGGKLNVCVSK  361 (494)
T ss_pred             CcEEEEEeccccccchhhhhhhhhhcCceeeEEEeecc--cceeEEEcCcHHHHHHHHHHhccCccccceEEEeecc
Confidence            35678888865 46778889999999999999999754  36999999999999999 6999999999999998653

>PF10309 DUF2414: Protein of unknown function (DUF2414); InterPro: IPR019416 This entry contains proteins that have no known function

Probab=93.30  E-value=0.43  Score=34.28  Aligned_cols=51  Identities=22%  Similarity=0.410  Sum_probs=42.6

Q ss_pred             cEEEEeCCCCCCCHHHHHHHhccC---CCceEEEEeecCCcCceEEEEecCHHHHHHHH
Q 026156            6 YVAEVVGLSPNATEKDIHEFFSHC---GDPVHVEIIRSGECGGTAYVTFSNAYALETAV   61 (242)
Q Consensus         6 ~tV~VsNLs~~~TE~dLrefFs~~---G~I~~V~l~~~~~~~~~AfV~F~~~~aA~tAl   61 (242)
                      ..|+|.|+. +.+.+||+.||..|   ....+|+.+.|.    .|=|.|.++..|..||
T Consensus         6 eavhirGvd-~lsT~dI~~y~~~y~~~~~~~~IEWIdDt----ScNvvf~d~~~A~~AL   59 (62)
T PF10309_consen    6 EAVHIRGVD-ELSTDDIKAYFSEYFDEEGPFRIEWIDDT----SCNVVFKDEETAARAL   59 (62)
T ss_pred             ceEEEEcCC-CCCHHHHHHHHHHhcccCCCceEEEecCC----cEEEEECCHHHHHHHH
Confidence            579999985 48899999999887   235789998763    6899999999999995

>KOG0105 consensus Alternative splicing factor ASF/SF2 (RRM superfamily) [RNA processing and modification]

Probab=93.07  E-value=0.27  Score=42.96  Aligned_cols=61  Identities=21%  Similarity=0.391  Sum_probs=53.1

Q ss_pred             CCcEEEEeCCCCCCCHHHHHHHhccCCCceEEEEeecCCcCceEEEEecCHHHHHHH-HhcCCCee
Q 026156            4 GGYVAEVVGLSPNATEKDIHEFFSHCGDPVHVEIIRSGECGGTAYVTFSNAYALETA-VLLSGATI   68 (242)
Q Consensus         4 ~~~tV~VsNLs~~~TE~dLrefFs~~G~I~~V~l~~~~~~~~~AfV~F~~~~aA~tA-l~Lng~~l   68 (242)
                      +++.|.|++|||+.+-+||+++.-..|++-..++.++    +++.|+|...++.+-| ..|+...+
T Consensus       114 Se~RVvVsGLp~SgSWQDLKDHmReaGdvCfadv~rD----g~GvV~~~r~eDMkYAvr~ld~~~~  175 (241)
T KOG0105|consen  114 SEYRVVVSGLPPSGSWQDLKDHMREAGDVCFADVQRD----GVGVVEYLRKEDMKYAVRKLDDQKF  175 (241)
T ss_pred             cceeEEEecCCCCCchHHHHHHHHhhCCeeeeeeecc----cceeeeeeehhhHHHHHHhhccccc
Confidence            3478999999999999999999999999998888876    3789999999999999 46666555

>KOG2314 consensus Translation initiation factor 3, subunit b (eIF-3b) [Translation, ribosomal structure and biogenesis]

Probab=92.88  E-value=0.13  Score=51.11  Aligned_cols=72  Identities=18%  Similarity=0.238  Sum_probs=55.0

Q ss_pred             cEEEEeCCCCCCCHH-------HHHHHhccCCCceEEEEeec--CCcCceEEEEecCHHHHHHH-HhcCCCeec-CeeEE
Q 026156            6 YVAEVVGLSPNATEK-------DIHEFFSHCGDPVHVEIIRS--GECGGTAYVTFSNAYALETA-VLLSGATIV-DQPVC   74 (242)
Q Consensus         6 ~tV~VsNLs~~~TE~-------dLrefFs~~G~I~~V~l~~~--~~~~~~AfV~F~~~~aA~tA-l~Lng~~l~-g~~I~   74 (242)
                      ..|.|-|+|- +-..       -|...|+.+|+|..+.+..+  +++.++.|++|.+...|+.| ..|||..|+ .+...
T Consensus        59 ~vVvv~g~Pv-V~~~rl~klk~vl~kvfsk~gk~vn~~~P~~e~ggtkG~lf~E~~~~~~A~~aVK~l~G~~ldknHtf~  137 (698)
T KOG2314|consen   59 SVVVVDGAPV-VGPARLEKLKKVLTKVFSKAGKIVNMYYPIDEEGGTKGYLFVEYASMRDAKKAVKSLNGKRLDKNHTFF  137 (698)
T ss_pred             eEEEECCCcc-cChhHHHHHHHHHHHHHHhhccccceeeccCccCCeeeEEEEEecChhhHHHHHHhcccceecccceEE
Confidence            4677888764 3222       24567999999999999854  44668999999999999999 799999987 45566


Q ss_pred             EEec
Q 026156           75 IIRW   78 (242)
Q Consensus        75 V~~a   78 (242)
                      |...
T Consensus       138 v~~f  141 (698)
T KOG2314|consen  138 VRLF  141 (698)
T ss_pred             eehh
Confidence            6544

>PF08675 RNA_bind: RNA binding domain; InterPro: IPR014789 This domain corresponds to the RNA binding domain of Poly(A)-specific ribonuclease (PARN)

Probab=92.77  E-value=0.62  Score=35.60  Aligned_cols=66  Identities=23%  Similarity=0.317  Sum_probs=45.0

Q ss_pred             cEEEEeCCCCCCCHHHHHHHhccCCCceEEEEeecCCcCceEEEEecCHHHHHHHH-hcCCCeecCeeEEEEecCCC
Q 026156            6 YVAEVVGLSPNATEKDIHEFFSHCGDPVHVEIIRSGECGGTAYVTFSNAYALETAV-LLSGATIVDQPVCIIRWGEY   81 (242)
Q Consensus         6 ~tV~VsNLs~~~TE~dLrefFs~~G~I~~V~l~~~~~~~~~AfV~F~~~~aA~tAl-~Lng~~l~g~~I~V~~a~~~   81 (242)
                      ...+|+ .|..+-..||.++|+.||.| +|..+.|    ..|||...+.+.+..++ .++ .   +...+|..+.+|
T Consensus        10 HVFhlt-FPkeWK~~DI~qlFspfG~I-~VsWi~d----TSAfV~l~~r~~~~~v~~~~~-~---~~~y~i~tY~ey   76 (87)
T PF08675_consen   10 HVFHLT-FPKEWKTSDIYQLFSPFGQI-YVSWIND----TSAFVALHNRDQAKVVMNTLK-K---NSSYRIQTYAEY   76 (87)
T ss_dssp             CEEEEE---TT--HHHHHHHCCCCCCE-EEEEECT----TEEEEEECCCHHHHHHHHHHT-T----SSSEEEEHHHH
T ss_pred             eEEEEe-CchHhhhhhHHHHhccCCcE-EEEEEcC----CcEEEEeecHHHHHHHHHHhc-c---CCceEEEEHHHH
Confidence            445666 99999999999999999985 6666654    47999999999999984 333 2   334555555443

; GO: 0003723 RNA binding, 0004535 poly(A)-specific ribonuclease activity, 0046872 metal ion binding, 0006402 mRNA catabolic process, 0005634 nucleus, 0005737 cytoplasm; PDB: 3CTR_A 2ROK_A 3D45_B 1WHV_A.

>KOG4849 consensus mRNA cleavage factor I subunit/CPSF subunit [RNA processing and modification]

Probab=92.68  E-value=0.11  Score=49.23  Aligned_cols=73  Identities=19%  Similarity=0.302  Sum_probs=57.9

Q ss_pred             cEEEEeCCCCCCCHHHHHHHhccCC--CceEEEEee---cCCcCceEEEEecCHHHHHHH-HhcCCCeecCeeEEEEec
Q 026156            6 YVAEVVGLSPNATEKDIHEFFSHCG--DPVHVEIIR---SGECGGTAYVTFSNAYALETA-VLLSGATIVDQPVCIIRW   78 (242)
Q Consensus         6 ~tV~VsNLs~~~TE~dLrefFs~~G--~I~~V~l~~---~~~~~~~AfV~F~~~~aA~tA-l~Lng~~l~g~~I~V~~a   78 (242)
                      +++||+||-|.+|++||-+-....|  .|.++++..   ++++++||.|...+..+.+.- -+|--.+|-|+.-.|.++
T Consensus        81 ~~~YvGNL~W~TTD~DL~~A~~S~G~~~~~dmKFFENR~NGQSKG~AL~~~~SdAa~Kq~MeiLP~k~iHGQ~P~V~~~  159 (498)
T KOG4849|consen   81 YCCYVGNLLWYTTDADLLKALQSTGLAQFADMKFFENRTNGQSKGYALLVLNSDAAVKQTMEILPTKTIHGQSPTVLSY  159 (498)
T ss_pred             EEEEecceeEEeccHHHHHHHHhhhHHHHhhhhhhhcccCCcccceEEEEecchHHHHHHHHhcccceecCCCCeeecc
Confidence            5799999999999999999876666  344444443   344668999999998888887 588889999988888754

>PF03467 Smg4_UPF3: Smg-4/UPF3 family; InterPro: IPR005120 Nonsense-mediated mRNA decay (NMD) is a surveillance mechanism by which eukaryotic cells detect and degrade transcripts containing premature termination codons

Probab=92.55  E-value=0.22  Score=42.57  Aligned_cols=68  Identities=25%  Similarity=0.243  Sum_probs=44.3

Q ss_pred             CcEEEEeCCCCCCCHHHHHHHhcc-CCCc---eEEEEeecCC-----cCceEEEEecCHHHHHHH-HhcCCCeecCee
Q 026156            5 GYVAEVVGLSPNATEKDIHEFFSH-CGDP---VHVEIIRSGE-----CGGTAYVTFSNAYALETA-VLLSGATIVDQP   72 (242)
Q Consensus         5 ~~tV~VsNLs~~~TE~dLrefFs~-~G~I---~~V~l~~~~~-----~~~~AfV~F~~~~aA~tA-l~Lng~~l~g~~   72 (242)
                      ...|.|.+|||+.||+++.+-.+. +|..   .++.-.....     ....|||.|.+.+.+..- ..++|..+.+..
T Consensus         7 ~~KvVIR~LPP~LteeeF~~~i~~~l~~~~~w~y~~g~~~~~~~~~~~~SRaYi~F~~~~~~~~F~~~~~g~~F~D~k   84 (176)
T PF03467_consen    7 GTKVVIRRLPPNLTEEEFWEQISPWLPDEWDWYYFQGKYGKKSFKPPTYSRAYINFKNPEDLLEFRDRFDGHVFVDSK   84 (176)
T ss_dssp             --EEEEEEE-TTS-HHHHCCCCSS--SSE---EEEEEEES-SSSTTS--EEEEEEESSCHHHHHHHHHCTTEEEE-TT
T ss_pred             CceEEEeCCCCCCCHHHHHHHhhhhcccccceEEEecCCCCccCCCCcceEEEEEeCCHHHHHHHHHhcCCcEEECCC
Confidence            358999999999999999887765 6665   3443222111     124899999999887776 789998876543

Three 'up-frameshift' proteins, UPF1, UPF2 and UPF3, are essential for this process in organisms ranging from yeast, human to plants []. Exon junction complexes (EJCs) are deposited ~24 nucleotides upstream of exon-exon junctions after splicing. Translation causes displacement of the EJCs, however, premature translation termination upstream of one or more EJCs triggers the recruitment of UPF1, UPF2 and UPF3 and activates the NMD pathway [, ]. This family contains UPF3. The crystal structure of the complex between human UPF2 and UPF3b, which are, respectively, a MIF4G (middle portion of eIF4G) domain and an RNP domain (ribonucleoprotein-type RNA-binding domain) has been determined to 1.95A. The protein-protein interface is mediated by highly conserved charged residues in UPF2 and UPF3b and involves the beta-sheet surface of the UPF3b ribonucleoprotein (RNP) domain, which is generally used by these domains to bind nucleic acids. In UPF3b the RNP domain does not bind RNA, whereas the UPF2 construct and the complex do. It is clear that some RNP domains have evolved for specific protein-protein interactions rather than as nucleic acid binding modules [].; PDB: 1UW4_A 2L08_A.

>KOG0115 consensus RNA-binding protein p54nrb (RRM superfamily) [RNA processing and modification]

Probab=91.68  E-value=0.16  Score=46.16  Aligned_cols=76  Identities=17%  Similarity=0.100  Sum_probs=59.9

Q ss_pred             cEEEEeCCCCCCCHHHHHHHhccCCCceEEEEeecCC--cCceEEEEecCHHHHHHHH-hcC----CCeecCeeEEEEec
Q 026156            6 YVAEVVGLSPNATEKDIHEFFSHCGDPVHVEIIRSGE--CGGTAYVTFSNAYALETAV-LLS----GATIVDQPVCIIRW   78 (242)
Q Consensus         6 ~tV~VsNLs~~~TE~dLrefFs~~G~I~~V~l~~~~~--~~~~AfV~F~~~~aA~tAl-~Ln----g~~l~g~~I~V~~a   78 (242)
                      ..|+|.||++.++-+.+++-|+.||+|..--++.|..  .++-..|.|.+.-.+..|+ ..+    +.+..++++.|.|.
T Consensus        32 a~l~V~nl~~~~sndll~~~f~~fg~~e~av~~vD~r~k~t~eg~v~~~~k~~a~~a~rr~~~~g~~~~~~~~p~~VeP~  111 (275)
T KOG0115|consen   32 AELYVVNLMQGASNDLLEQAFRRFGPIERAVAKVDDRGKPTREGIVEFAKKPNARKAARRCREGGFGGTTGGRPVGVEPM  111 (275)
T ss_pred             ceEEEEecchhhhhHHHHHhhhhcCccchheeeecccccccccchhhhhcchhHHHHHHHhccCccccCCCCCccCCChh
Confidence            4699999999999999999999999999877775532  3568999999999999884 332    23556778888766


Q ss_pred             CCC
Q 026156           79 GEY   81 (242)
Q Consensus        79 ~~~   81 (242)
                      .-.
T Consensus       112 eq~  114 (275)
T KOG0115|consen  112 EQP  114 (275)
T ss_pred             hcc
Confidence            443

>KOG2202 consensus U2 snRNP splicing factor, small subunit, and related proteins [RNA processing and modification]

Probab=91.45  E-value=0.1  Score=47.12  Aligned_cols=59  Identities=17%  Similarity=0.175  Sum_probs=47.8

Q ss_pred             HHHHHHhc-cCCCceEEEEeecCC--cCceEEEEecCHHHHHHH-HhcCCCeecCeeEEEEec
Q 026156           20 KDIHEFFS-HCGDPVHVEIIRSGE--CGGTAYVTFSNAYALETA-VLLSGATIVDQPVCIIRW   78 (242)
Q Consensus        20 ~dLrefFs-~~G~I~~V~l~~~~~--~~~~AfV~F~~~~aA~tA-l~Lng~~l~g~~I~V~~a   78 (242)
                      ++|-..|+ .||.|+++.+....+  ..+-+||.|..+++|+.| ..|||.-+.|++|.....
T Consensus        83 Ed~f~E~~~kygEiee~~Vc~Nl~~hl~GNVYV~f~~Ee~ae~a~~~lnnRw~~G~pi~ae~~  145 (260)
T KOG2202|consen   83 EDVFTELEDKYGEIEELNVCDNLGDHLVGNVYVKFRSEEDAEAALEDLNNRWYNGRPIHAELS  145 (260)
T ss_pred             HHHHHHHHHHhhhhhhhhhhcccchhhhhhhhhhcccHHHHHHHHHHHcCccccCCcceeeec
Confidence            34444555 999999998875533  346899999999999999 699999999999988754

>KOG0128 consensus RNA-binding protein SART3 (RRM superfamily) [RNA processing and modification]

Probab=91.31  E-value=0.18  Score=52.16  Aligned_cols=73  Identities=12%  Similarity=0.150  Sum_probs=61.0

Q ss_pred             cEEEEeCCCCCCCHHHHHHHhccCCCceEEEEeec--CCcCceEEEEecCHHHHHHH-HhcCCCeecCeeEEEEec
Q 026156            6 YVAEVVGLSPNATEKDIHEFFSHCGDPVHVEIIRS--GECGGTAYVTFSNAYALETA-VLLSGATIVDQPVCIIRW   78 (242)
Q Consensus         6 ~tV~VsNLs~~~TE~dLrefFs~~G~I~~V~l~~~--~~~~~~AfV~F~~~~aA~tA-l~Lng~~l~g~~I~V~~a   78 (242)
                      ..|+|+|.|+..|.++++..|+..|.+++++++..  +...+.|+|.|.++..+..+ ...++..+.-+.+.|...
T Consensus       737 ~~v~i~g~pf~gt~e~~k~l~~~~gn~~~~~~vt~r~gkpkg~a~v~y~~ea~~s~~~~s~d~~~~rE~~~~v~vs  812 (881)
T KOG0128|consen  737 ISVAISGPPFQGTKEELKSLASKTGNVTSLRLVTVRAGKPKGKARVDYNTEADASRKVASVDVAGKRENNGEVQVS  812 (881)
T ss_pred             hhhheeCCCCCCchHHHHhhccccCCccccchhhhhccccccceeccCCCcchhhhhcccchhhhhhhcCcccccc
Confidence            46899999999999999999999999999988754  33568999999999999998 466777776666666543

>PF07576 BRAP2: BRCA1-associated protein 2; InterPro: IPR011422 These proteins include BRCA1-associated protein 2 (BRAP2), which binds nuclear localisation signals (NLSs) in vitro and in yeast two-hybrid screening []

Probab=91.08  E-value=1.6  Score=34.60  Aligned_cols=64  Identities=16%  Similarity=0.201  Sum_probs=47.1

Q ss_pred             EEEEeCCCC-CCCHHHHHHHhccC-CCceEEEEeecCCcCc-eEEEEecCHHHHHHH-HhcCCCeecC
Q 026156            7 VAEVVGLSP-NATEKDIHEFFSHC-GDPVHVEIIRSGECGG-TAYVTFSNAYALETA-VLLSGATIVD   70 (242)
Q Consensus         7 tV~VsNLs~-~~TE~dLrefFs~~-G~I~~V~l~~~~~~~~-~AfV~F~~~~aA~tA-l~Lng~~l~g   70 (242)
                      ++.|--+|| -++-++|..|.+.+ ..|.+++|++++...+ -+.+.|.++..|..= ..+||..+..
T Consensus        14 ~~~~l~vp~~~~~~d~l~~f~~~~~~~i~~~riird~~pnrymVLikF~~~~~Ad~Fy~~fNGk~Fns   81 (110)
T PF07576_consen   14 TLCCLAVPPYMTPSDFLLFFGAPFREDIEHIRIIRDGTPNRYMVLIKFRDQESADEFYEEFNGKPFNS   81 (110)
T ss_pred             eEEEEEeCcccccHHHHHHhhhcccccEEEEEEeeCCCCceEEEEEEECCHHHHHHHHHHhCCCccCC
Confidence            444444444 45556677666644 5788999999876555 688999999999988 8999998754

These proteins share a region of sequence similarity at their N terminus. They also have IPR001607 from INTERPRO at the C terminus.

>PF15023 DUF4523: Protein of unknown function (DUF4523)

Probab=90.56  E-value=1  Score=37.86  Aligned_cols=65  Identities=17%  Similarity=0.083  Sum_probs=48.0

Q ss_pred             cEEEEe----CCCCCCCHHHHHHHhccCCCceEEEEeecCCcCceEEEEecCHHHHHHHHhcCCCeecCeeEE
Q 026156            6 YVAEVV----GLSPNATEKDIHEFFSHCGDPVHVEIIRSGECGGTAYVTFSNAYALETAVLLSGATIVDQPVC   74 (242)
Q Consensus         6 ~tV~Vs----NLs~~~TE~dLrefFs~~G~I~~V~l~~~~~~~~~AfV~F~~~~aA~tAl~Lng~~l~g~~I~   74 (242)
                      .||.|.    |+.|.-+-+.+....+.||+|.+|.+..    .+.|.|+|+|-.+|-.|+.--+...-|..+.
T Consensus        87 sTIVVRWlkknm~~~edl~sV~~~Ls~fGpI~SVT~cG----rqsavVvF~d~~SAC~Av~Af~s~~pgtm~q  155 (166)
T PF15023_consen   87 STIVVRWLKKNMQPTEDLKSVIQRLSVFGPIQSVTLCG----RQSAVVVFKDITSACKAVSAFQSRAPGTMFQ  155 (166)
T ss_pred             eeEEeehhhhcCChHHHHHHHHHHHHhcCCcceeeecC----CceEEEEehhhHHHHHHHHhhcCCCCCceEE
Confidence            466664    7777777777888899999999999872    3699999999999999954333333343333

>KOG1456 consensus Heterogeneous nuclear ribonucleoprotein L (contains RRM repeats) [RNA processing and modification]

Probab=89.27  E-value=1.8  Score=41.57  Aligned_cols=67  Identities=19%  Similarity=0.191  Sum_probs=55.1

Q ss_pred             EeCCCCCCCHHHHHHHhccCCCceEEEEeecCCcCceEEEEecCHHHHHHH-HhcCCCeecC--eeEEEEec
Q 026156           10 VVGLSPNATEKDIHEFFSHCGDPVHVEIIRSGECGGTAYVTFSNAYALETA-VLLSGATIVD--QPVCIIRW   78 (242)
Q Consensus        10 VsNLs~~~TE~dLrefFs~~G~I~~V~l~~~~~~~~~AfV~F~~~~aA~tA-l~Lng~~l~g--~~I~V~~a   78 (242)
                      |-|--+.+|-+-|..+-..+|+|..|-|.+..  .-.|.|+|++-+.|+.| -.|||+.|..  +.++|..+
T Consensus       127 IlNp~YpItvDVly~Icnp~GkVlRIvIfkkn--gVQAmVEFdsv~~AqrAk~alNGADIYsGCCTLKIeyA  196 (494)
T KOG1456|consen  127 ILNPQYPITVDVLYTICNPQGKVLRIVIFKKN--GVQAMVEFDSVEVAQRAKAALNGADIYSGCCTLKIEYA  196 (494)
T ss_pred             eecCccccchhhhhhhcCCCCceEEEEEEecc--ceeeEEeechhHHHHHHHhhcccccccccceeEEEEec
Confidence            34555579999999999999999999998653  34899999999999999 7999999853  56667644

>PF04847 Calcipressin: Calcipressin; InterPro: IPR006931 Calcipressin 1 negatively regulates calcineurin (IPR015757 from INTERPRO) by direct binding and is essential for the survival of T helper type 1 cells

Probab=88.55  E-value=1.7  Score=37.46  Aligned_cols=58  Identities=21%  Similarity=0.274  Sum_probs=45.2

Q ss_pred             CHHHHHHHhccCCCceEEEEeecCCcCceEEEEecCHHHHHHH-HhcC--CCeecCeeEEEEec
Q 026156           18 TEKDIHEFFSHCGDPVHVEIIRSGECGGTAYVTFSNAYALETA-VLLS--GATIVDQPVCIIRW   78 (242)
Q Consensus        18 TE~dLrefFs~~G~I~~V~l~~~~~~~~~AfV~F~~~~aA~tA-l~Ln--g~~l~g~~I~V~~a   78 (242)
                      ....|+++|..++.+..+..++.   .+-..|.|.+.+.|..| ..|+  +..+.|..++|...
T Consensus         8 ~~~~l~~l~~~~~~~~~~~~L~s---FrRi~v~f~~~~~A~~~r~~l~~~~~~~~g~~l~~yf~   68 (184)
T PF04847_consen    8 NLAELEELFSTYDPPVQFSPLKS---FRRIRVVFESPESAQRARQLLHWDGTSFNGKRLRVYFG   68 (184)
T ss_dssp             -HHHHHHHHHTT-SS-EEEEETT---TTEEEEE-SSTTHHHHHHHTST--TSEETTEE-EEE--
T ss_pred             hHHHHHHHHHhcCCceEEEEcCC---CCEEEEEeCCHHHHHHHHHHhcccccccCCCceEEEEc
Confidence            45889999999999999888753   46789999999999999 7888  99999999999755

Calcipressin 1 is a phosphoprotein that increases its capacity to inhibit calcineurin when phosphorylated at the FLISPP motif, and this phosphorylation also controls the half-life of calcipressin 1 by accelerating its degradation []. Calcineurin is a calcium-responsive enzyme that dephosphorylates the nuclear factor of activated T cells (NFAT). In so doing it promotes its nuclear translocation and uniquely links calcium signalling to transcriptional regulation []. Calcipressins are a family of proteins derived from three genes. Calcipressin 1 is also known as modulatory calcineurin-interacting protein 1 (MCIP1), Adapt78 and Down syndrome critical region 1 (DSCR1). Calcipressin 2 is variously known as MCIP2, ZAKI-4 and DSCR1-like 1. Calcipressin 3 is also called MCIP3 and DSCR1-like 2 []. DSCR1 (Adapt78) is associated with successful adaptation to oxidative stress and calcium stress as well as with diseases like Alzheimer's and Down syndrome. The DSCR1 (Adapt78) isoform 1 protein, calcipressin 1, inhibits calcineurin and protects against acute calcium-mediated stress damage, including transient oxidative stress []. Calcipressin 1 is encoded by DSCR1, a gene on human chromosome 21. Calcipressin 1 isoform 1 has an N-terminal coding region, which generates a new polypeptide of 252 amino acids. Endogenous calcipressin 1 exists as a complex together with the calcineurin A and B heterodimer []. ; GO: 0019722 calcium-mediated signaling; PDB: 1WEY_A.

>KOG0112 consensus Large RNA-binding protein (RRM superfamily) [General function prediction only]

Probab=88.32  E-value=0.67  Score=48.46  Aligned_cols=72  Identities=15%  Similarity=0.148  Sum_probs=61.3

Q ss_pred             cEEEEeCCCCCCCHHHHHHHhccCCCceEEEEeecCCcCceEEEEecCHHHHHHH-HhcCCCeecC--eeEEEEecCC
Q 026156            6 YVAEVVGLSPNATEKDIHEFFSHCGDPVHVEIIRSGECGGTAYVTFSNAYALETA-VLLSGATIVD--QPVCIIRWGE   80 (242)
Q Consensus         6 ~tV~VsNLs~~~TE~dLrefFs~~G~I~~V~l~~~~~~~~~AfV~F~~~~aA~tA-l~Lng~~l~g--~~I~V~~a~~   80 (242)
                      +.++|++|.+.+....|...|..||.|..|.+-.   ...+|||.|+++..+..| -.+-|..|++  +.+.|..+.+
T Consensus       456 tr~~sgglg~w~p~~~l~r~fd~fGpir~Idy~h---gq~yayi~yes~~~aq~a~~~~rgap~G~P~~r~rvdla~~  530 (975)
T KOG0112|consen  456 TRLQSGGLGPWSPVSRLNREFDRFGPIRIIDYRH---GQPYAYIQYESPPAAQAATHDMRGAPLGGPPRRLRVDLASP  530 (975)
T ss_pred             eeeccCCCCCCChHHHHHHHhhccCcceeeeccc---CCcceeeecccCccchhhHHHHhcCcCCCCCcccccccccC
Confidence            5699999999999999999999999999988852   124999999999999999 6889999976  5577765544

>PLN03121 nucleic acid binding protein; Provisional

Probab=88.10  E-value=0.53  Score=42.43  Aligned_cols=41  Identities=17%  Similarity=0.223  Sum_probs=28.7

Q ss_pred             cceecHHHHHHHHHhhhhcCCcHHHH---HHHHhhhhccccchh
Q 026156          130 GYVLSKDALVKAKALDESYGLSASAA---AKVAELSNRIGLTDK  170 (242)
Q Consensus       130 Gyvl~~~ai~kA~~~Dekh~~ss~~~---~~v~~~d~k~g~t~k  170 (242)
                      -+-|+-.|-.|.-+||++.|||.++.   .+|.++|+|||++|+
T Consensus       147 ~h~lss~a~a~v~~~d~~iglt~k~~~g~~~vk~vDeky~vs~~  190 (243)
T PLN03121        147 SHQVSATAAAKVAELSKRIGLTDKIFAGMEAVRSVDEKYHVSEF  190 (243)
T ss_pred             hcCccHhhhhhhhhhhhhccchhhhhhhHHHHHhhhhhhhhHHH
Confidence            34466677777777777777777664   466777777777777

>KOG2253 consensus U1 snRNP complex, subunit SNU71 and related PWI-motif proteins [RNA processing and modification]

Probab=87.82  E-value=0.29  Score=49.43  Aligned_cols=68  Identities=15%  Similarity=-0.044  Sum_probs=59.6

Q ss_pred             CcEEEEeCCCCCCCHHHHHHHhccCCCceEEEEeecCCcCceEEEEecCHHHHHHH-HhcCCCeecCeeEEEEec
Q 026156            5 GYVAEVVGLSPNATEKDIHEFFSHCGDPVHVEIIRSGECGGTAYVTFSNAYALETA-VLLSGATIVDQPVCIIRW   78 (242)
Q Consensus         5 ~~tV~VsNLs~~~TE~dLrefFs~~G~I~~V~l~~~~~~~~~AfV~F~~~~aA~tA-l~Lng~~l~g~~I~V~~a   78 (242)
                      ..+|||+||+..+...-++....+||-|.++...      .|+|..|.+....-.| ++|+--.++|..+.+.+.
T Consensus        40 ~~~vfv~~~~~~~s~~~~~~il~~~g~v~s~kr~------~fgf~~f~~~~~~~ra~r~~t~~~~~~~kl~~~~d  108 (668)
T KOG2253|consen   40 RDTVFVGNISYLVSQEFWKSILAKSGFVPSWKRD------KFGFCEFLKHIGDLRASRLLTELNIDDQKLIENVD  108 (668)
T ss_pred             CceeEecchhhhhhHHHHHHHHhhCCcchhhhhh------hhcccchhhHHHHHHHHHHhcccCCCcchhhccch
Confidence            4699999999999999999999999999887654      3999999999999999 688888898888877654

>KOG2068 consensus MOT2 transcription factor [Transcription]

Probab=87.22  E-value=0.25  Score=46.19  Aligned_cols=70  Identities=14%  Similarity=0.260  Sum_probs=54.1

Q ss_pred             EEEEeCCCCCCCHHHH-H--HHhccCCCceEEEEeecC--C----cCceEEEEecCHHHHHHHH-hcCCCeecCeeEEEE
Q 026156            7 VAEVVGLSPNATEKDI-H--EFFSHCGDPVHVEIIRSG--E----CGGTAYVTFSNAYALETAV-LLSGATIVDQPVCII   76 (242)
Q Consensus         7 tV~VsNLs~~~TE~dL-r--efFs~~G~I~~V~l~~~~--~----~~~~AfV~F~~~~aA~tAl-~Lng~~l~g~~I~V~   76 (242)
                      -+||-+|++..-++.+ +  ++|+.||+|..|.+.++.  .    ....+||||+..+.+..++ ..+|..++|+.++..
T Consensus        79 lvyvvgl~~~~ade~~l~~~eyfgqygki~ki~~~~~~S~~s~~~~~~s~yITy~~~eda~rci~~v~g~~~dg~~lka~  158 (327)
T KOG2068|consen   79 LVYVVGLPLDLADESVLERTEYFGQYGKINKIVKNKDPSSSSSSGGTCSVYITYEEEEDADRCIDDVDGFVDDGRALKAS  158 (327)
T ss_pred             hhhhhCCCccccchhhhhCcccccccccceEEeecCCcccccCCCCCCcccccccchHhhhhHHHHhhhHHhhhhhhHHh
Confidence            4778899887655544 3  689999999999998754  1    2247999999999999994 778888888876654

>KOG0804 consensus Cytoplasmic Zn-finger protein BRAP2 (BRCA1 associated protein) [General function prediction only]

Probab=86.23  E-value=2  Score=41.99  Aligned_cols=66  Identities=15%  Similarity=0.234  Sum_probs=57.7

Q ss_pred             CcEEEEeCCCCCCCHHHHHHHh-ccCCCceEEEEeecCCcCc-eEEEEecCHHHHHHH-HhcCCCeecC
Q 026156            5 GYVAEVVGLSPNATEKDIHEFF-SHCGDPVHVEIIRSGECGG-TAYVTFSNAYALETA-VLLSGATIVD   70 (242)
Q Consensus         5 ~~tV~VsNLs~~~TE~dLrefF-s~~G~I~~V~l~~~~~~~~-~AfV~F~~~~aA~tA-l~Lng~~l~g   70 (242)
                      .+.|.|--+|...|-.||-.|. +++-.|.+|++++++...+ ...|.|.+..+|.+- ..+||..+..
T Consensus        74 ~~mLcilaVP~~mt~~Dll~F~~~~~~~I~~irivRd~~pnrymvLIkFr~q~da~~Fy~efNGk~Fn~  142 (493)
T KOG0804|consen   74 STMLCILAVPAYMTSHDLLRFCASFIKQISDIRIVRDGMPNRYMVLIKFRDQADADTFYEEFNGKQFNS  142 (493)
T ss_pred             CcEEEEEeccccccHHHHHHHHHHHhhhhheeEEeecCCCceEEEEEEeccchhHHHHHHHcCCCcCCC
Confidence            4678999999999999999998 4667899999999877665 689999999999999 8999998765

>KOG2135 consensus Proteins containing the RNA recognition motif [General function prediction only]

Probab=85.08  E-value=0.47  Score=46.40  Aligned_cols=67  Identities=18%  Similarity=0.166  Sum_probs=54.4

Q ss_pred             EEEEeCCCCCC-CHHHHHHHhccCCCceEEEEeecCCcCceEEEEecCHHHHHHHHhcCCCeecCeeEEEE
Q 026156            7 VAEVVGLSPNA-TEKDIHEFFSHCGDPVHVEIIRSGECGGTAYVTFSNAYALETAVLLSGATIVDQPVCII   76 (242)
Q Consensus         7 tV~VsNLs~~~-TE~dLrefFs~~G~I~~V~l~~~~~~~~~AfV~F~~~~aA~tAl~Lng~~l~g~~I~V~   76 (242)
                      .+.+--+++.. +-.+|..+|..||+|..|.+-..   ..-|.|||....++-.|-...+..|+++.|+|.
T Consensus       374 ~l~lek~~~glnt~a~ln~hfA~fG~i~n~qv~~~---~~~a~vTF~t~aeag~a~~s~~avlnnr~iKl~  441 (526)
T KOG2135|consen  374 PLALEKSPFGLNTIADLNPHFAQFGEIENIQVDYS---SLHAVVTFKTRAEAGEAYASHGAVLNNRFIKLF  441 (526)
T ss_pred             hhhhhccCCCCchHhhhhhhhhhcCccccccccCc---hhhheeeeeccccccchhccccceecCceeEEE
Confidence            33444444443 67889999999999999988533   357999999999999999999999999999996

>PF15513 DUF4651: Domain of unknown function (DUF4651)

Probab=84.24  E-value=1.2  Score=32.08  Aligned_cols=19  Identities=26%  Similarity=0.504  Sum_probs=15.9

Q ss_pred             HHHHHHhccCCCceEEEEe
Q 026156           20 KDIHEFFSHCGDPVHVEII   38 (242)
Q Consensus        20 ~dLrefFs~~G~I~~V~l~   38 (242)
                      .+||+|||..|+|.-+-+.
T Consensus         9 ~~iR~~fs~lG~I~vLYvn   27 (62)
T PF15513_consen    9 AEIRQFFSQLGEIAVLYVN   27 (62)
T ss_pred             HHHHHHHHhcCcEEEEEEc
Confidence            5899999999999766554

>KOG2591 consensus c-Mpl binding protein, contains La domain [Signal transduction mechanisms]

Probab=82.64  E-value=2.3  Score=42.55  Aligned_cols=65  Identities=15%  Similarity=0.311  Sum_probs=51.3

Q ss_pred             cEEEEeCCCCCCCHHHHHHHhc--cCCCceEEEEeecCCcCceEEEEecCHHHHHHH-HhcC--CCeecCeeEE
Q 026156            6 YVAEVVGLSPNATEKDIHEFFS--HCGDPVHVEIIRSGECGGTAYVTFSNAYALETA-VLLS--GATIVDQPVC   74 (242)
Q Consensus         6 ~tV~VsNLs~~~TE~dLrefFs--~~G~I~~V~l~~~~~~~~~AfV~F~~~~aA~tA-l~Ln--g~~l~g~~I~   74 (242)
                      |.|.+.-||..+-+++++-+|.  .|=++.+|+.-..+.    =||+|++..+|+.| ..|.  -.+|-|++|.
T Consensus       176 cIvilREIpettp~e~Vk~lf~~encPk~iscefa~N~n----WyITfesd~DAQqAykylreevk~fqgKpIm  245 (684)
T KOG2591|consen  176 CIVILREIPETTPIEVVKALFKGENCPKVISCEFAHNDN----WYITFESDTDAQQAYKYLREEVKTFQGKPIM  245 (684)
T ss_pred             eEEEEeecCCCChHHHHHHHhccCCCCCceeeeeeecCc----eEEEeecchhHHHHHHHHHHHHHhhcCcchh
Confidence            5688999999999999999996  599999999876543    49999999999998 3332  2345555554

>KOG2193 consensus IGF-II mRNA-binding protein IMP, contains RRM and KH domains [RNA processing and modification; General function prediction only]

Probab=82.63  E-value=1.3  Score=43.18  Aligned_cols=65  Identities=23%  Similarity=0.268  Sum_probs=51.0

Q ss_pred             EEEEeCCCCCCCHHHHHHHhccCCCceEEEEeecCC---cCceEEEEecCHHHHHHH-HhcCCC-eecCeeEEEEe
Q 026156            7 VAEVVGLSPNATEKDIHEFFSHCGDPVHVEIIRSGE---CGGTAYVTFSNAYALETA-VLLSGA-TIVDQPVCIIR   77 (242)
Q Consensus         7 tV~VsNLs~~~TE~dLrefFs~~G~I~~V~l~~~~~---~~~~AfV~F~~~~aA~tA-l~Lng~-~l~g~~I~V~~   77 (242)
                      .+|++||+|.++..+|+..|... +|     .-.++   ..+++||...+..-+..| ..|+|. ++-|.++.|..
T Consensus         3 klyignL~p~~~psdl~svfg~a-k~-----~~~g~fl~k~gyafvd~pdq~wa~kaie~~sgk~elqGkr~e~~~   72 (584)
T KOG2193|consen    3 KLYIGNLSPQVTPSDLESVFGDA-KI-----PGSGQFLVKSGYAFVDCPDQQWANKAIETLSGKVELQGKRQEVEH   72 (584)
T ss_pred             cccccccCCCCChHHHHHHhccc-cC-----CCCcceeeecceeeccCCchhhhhhhHHhhchhhhhcCceeeccc
Confidence            68999999999999999999654 11     11111   357999999999999999 577775 57888888863

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	242
2cq4_A	114	RNA binding motif protein 23; RRM domain, structur	7e-10
1wel_A	124	RNA-binding protein 12; structural genomics, NPPSF	1e-09
1fje_B	175	Nucleolin RBD12, protein C23; RNP, RRM, RNA bindin	1e-09
1fje_B	175	Nucleolin RBD12, protein C23; RNP, RRM, RNA bindin	2e-04
2hgn_A	139	Heterogeneous nuclear ribonucleoprotein F; RNA rec	3e-09
2cpy_A	114	RNA-binding protein 12; RRM domain, structural gen	6e-09
1wez_A	102	HnRNP H', FTP-3, heterogeneous nuclear ribonucleop	9e-09
2dgw_A	91	Probable RNA-binding protein 19; RRM domain, struc	1e-08
3s8s_A	110	Histone-lysine N-methyltransferase SETD1A; chromat	2e-08
1s79_A	103	Lupus LA protein; RRM, alpha/beta, RNA binding pro	2e-08
3pgw_S	437	U1-70K; protein-RNA complex, U1 snRNA, SM fold, SM	2e-08
3ucg_A	89	Polyadenylate-binding protein 2; ferredoxin-like,	2e-08
2dnn_A	109	RNA-binding protein 12; RRM domain, RBD, structura	2e-08
1wg5_A	104	Heterogeneous nuclear ribonucleoprotein H; structu	3e-08
2ytc_A	85	PRE-mRNA-splicing factor RBM22; RRM domain, RBD, s	3e-08
2db1_A	118	Heterogeneous nuclear ribonucleoprotein F; RRM dom	6e-08
2lmi_A	107	GRSF-1, G-rich sequence factor 1; G-rich RNA seque	6e-08
2voo_A	193	Lupus LA protein; RNA-binding protein, RNA recogni	7e-08
2hgm_A	126	HNRPF protein, heterogeneous nuclear ribonucleopro	1e-07
2j76_E	100	EIF-4B, EIF4B, eukaryotic translation initiation f	1e-07
2hgl_A	136	HNRPF protein, heterogeneous nuclear ribonucleopro	1e-07
2jwn_A	124	Embryonic polyadenylate-binding protein 2-B; epabp	1e-07
2la4_A	101	Nuclear and cytoplasmic polyadenylated RNA-bindin	2e-07
2ghp_A	292	U4/U6 snRNA-associated splicing factor PRP24; RNA	3e-07
2ghp_A	292	U4/U6 snRNA-associated splicing factor PRP24; RNA	5e-05
1x4c_A	108	Splicing factor, arginine/serine-rich 1; structura	4e-07
1wi8_A	104	EIF-4B, eukaryotic translation initiation factor 4	4e-07
3beg_B	115	Splicing factor, arginine/serine-rich 1; kinase, S	5e-07
2dng_A	103	Eukaryotic translation initiation factor 4H; RRM d	5e-07
2cqp_A	98	RNA-binding protein 12; RNA recognition motif, RRM	6e-07
2ek1_A	95	RNA-binding protein 12; RNA recognition motif, dim	8e-07
4a8x_A	88	RNA-binding protein with serine-rich domain 1; tra	9e-07
1fj7_A	101	Nucleolin RBD1, protein C23; RNP, RRM, RNA binding	1e-06
2dha_A	123	FLJ20171 protein; RRM domain, structural genomics,	1e-06
1h2v_Z	156	20 kDa nuclear CAP binding protein; CAP-binding-co	2e-06
2e44_A	96	Insulin-like growth factor 2 mRNA binding protein	2e-06
1b7f_A	168	Protein (SXL-lethal protein), RNA (5'-R(P*GP*UP*UP	2e-06
2cqi_A	103	Nucleolysin TIAR; RNA recognition motif, RRM, RNA	3e-06
3lqv_A	115	PRE-mRNA branch site protein P14; cysless mutant,	4e-06
1fxl_A	167	Paraneoplastic encephalomyelitis antigen HUD; prot	4e-06
1fxl_A	167	Paraneoplastic encephalomyelitis antigen HUD; prot	8e-04
2f3j_A	177	RNA and export factor binding protein 2; RRM domai	4e-06
3ex7_B	126	RNA-binding protein 8A; protein-RNA complex, mRNA	4e-06
2yh0_A	198	Splicing factor U2AF 65 kDa subunit; PRE-mRNA spli	5e-06
2yh0_A	198	Splicing factor U2AF 65 kDa subunit; PRE-mRNA spli	4e-05
3md3_A	166	Nuclear and cytoplasmic polyadenylated RNA-bindin	5e-06
3md3_A	166	Nuclear and cytoplasmic polyadenylated RNA-bindin	9e-04
2qfj_A	216	FBP-interacting repressor; protein-DNA complex; HE	5e-06
2qfj_A	216	FBP-interacting repressor; protein-DNA complex; HE	7e-05
2cjk_A	167	Nuclear polyadenylated RNA-binding protein 4; HRP1	5e-06
2cjk_A	167	Nuclear polyadenylated RNA-binding protein 4; HRP1	1e-05
2fy1_A	116	RNA-binding motif protein, Y chromosome, family 1	6e-06
2do4_A	100	Squamous cell carcinoma antigen recognized by T- c	7e-06
2jvr_A	111	Nucleolar protein 3; RNA recognition motif, nucleu	7e-06
2g4b_A	172	Splicing factor U2AF 65 kDa subunit; protein-RNA c	9e-06
2g4b_A	172	Splicing factor U2AF 65 kDa subunit; protein-RNA c	2e-05
1l3k_A	196	Heterogeneous nuclear ribonucleoprotein A1; nuclea	1e-05
1l3k_A	196	Heterogeneous nuclear ribonucleoprotein A1; nuclea	1e-05
2hzc_A	87	Splicing factor U2AF 65 kDa subunit; RNA splicing,	1e-05
2div_A	99	TRNA selenocysteine associated protein; structural	1e-05
1rk8_A	165	CG8781-PA, CG8781-PA protein; mRNA processing, RRM	1e-05
2xs2_A	102	Deleted in azoospermia-like; RNA binding protein-R	1e-05
1x4g_A	109	Nucleolysin TIAR; structural genomics, RRM domain,	1e-05
4f02_A	213	Polyadenylate-binding protein 1; mRNA, eukaryotic	2e-05
1x4a_A	109	Splicing factor, arginine/serine-rich 1 (splicing	2e-05
2kxn_B	129	Transformer-2 protein homolog beta; SR protein, RR	2e-05
2cq0_A	103	Eukaryotic translation initiation factor 3 subunit	2e-05
2hvz_A	101	Splicing factor, arginine/serine-rich 7; RRM, RNA	2e-05
1why_A	97	Hypothetical protein riken cDNA 1810017N16; RNA re	2e-05
2dgp_A	106	Bruno-like 4, RNA binding protein; RRM domain, str	2e-05
2e5g_A	94	U6 snRNA-specific terminal uridylyltransferase 1;	2e-05
2dis_A	109	Unnamed protein product; structural genomics, RRM	3e-05
1p27_B	106	RNA-binding protein 8A; nuclear protein, mRNA spli	3e-05
2kt5_A	124	RNA and export factor-binding protein 2; chaperone	3e-05
2dgs_A	99	DAZ-associated protein 1; RRM domain, structural g	3e-05
1oo0_B	110	CG8781-PA, drosophila Y14; RNA recognition motif,	4e-05
2lea_A	135	Serine/arginine-rich splicing factor 2; SR protein	4e-05
2x1f_A	96	MRNA 3'-END-processing protein RNA15; transcriptio	5e-05
3ulh_A	107	THO complex subunit 4; nuclear protein, RNA bindin	5e-05
1x4h_A	111	RNA-binding protein 28; structural genomics, RRM d	5e-05
1iqt_A	75	AUF1, heterogeneous nuclear ribonucleoprotein D0;	5e-05
3smz_A	284	Protein raver-1, ribonucleoprotein PTB-binding 1;	7e-05
3smz_A	284	Protein raver-1, ribonucleoprotein PTB-binding 1;	5e-04
2kn4_A	158	Immunoglobulin G-binding protein G, splicing FACT	7e-05
2cqh_A	93	IGF-II mRNA-binding protein 2 isoform A; RNA recog	8e-05
2dnm_A	103	SRP46 splicing factor; RRM domain, RBD, structural	9e-05
3r27_A	100	HnRNP L, heterogeneous nuclear ribonucleoprotein L	1e-04
1x5u_A	105	Splicing factor 3B subunit 4 (spliceosome associat	1e-04
2cqc_A	95	Arginine/serine-rich splicing factor 10; RNA recog	1e-04
2jvo_A	108	Nucleolar protein 3; nucleus, phosphorylation, rib	1e-04
2e5h_A	94	Zinc finger CCHC-type and RNA-binding motif- conta	1e-04
1whw_A	99	Hypothetical protein riken cDNA 1200009A02; RNA re	2e-04
2ku7_A	140	MLL1 PHD3-CYP33 RRM chimeric protein; transcriptio	2e-04
3mdf_A	85	Peptidyl-prolyl CIS-trans isomerase E; RRM domain,	2e-04
2dnh_A	105	Bruno-like 5, RNA binding protein; RRM domain, RBD	2e-04
2mss_A	75	Protein (musashi1); RNA-binding domain, RNA bindin	2e-04
2cpj_A	99	Non-POU domain-containing octamer-binding protein;	2e-04
1fjc_A	96	Nucleolin RBD2, protein C23; RNP, RRM, RNA binding	2e-04
2adc_A	229	Polypyrimidine tract-binding protein 1; RBD, RRM,	2e-04
3nmr_A	175	Cugbp ELAV-like family member 1; RRM, PRE-mRNA spl	2e-04
1wf0_A	88	TDP-43, TAR DNA-binding protein-43; structural gen	2e-04
2la6_A	99	RNA-binding protein FUS; structural genomics, nort	2e-04
3d2w_A	89	TAR DNA-binding protein 43; DP-43 proteinopathy, T	3e-04
2i2y_A	150	Fusion protein consists of immunoglobin G- binding	3e-04
2a3j_A	127	U1 small nuclear ribonucleoprotein A; computationa	3e-04
1sjq_A	105	Polypyrimidine tract-binding protein 1; babbab mot	3e-04
2lkz_A	95	RNA-binding protein 5; RRM; NMR {Homo sapiens} Len	3e-04
2lcw_A	116	RNA-binding protein FUS; RRM, nucleic acid binding	3e-04
1x5s_A	102	Cold-inducible RNA-binding protein; structure geno	3e-04
3sde_A	261	Paraspeckle component 1; RRM, anti parallel right	3e-04
2dnl_A	114	Cytoplasmic polyadenylation element binding protei	3e-04
2do0_A	114	HnRNP M, heterogeneous nuclear ribonucleoprotein M	4e-04
2cpe_A	113	RNA-binding protein EWS; RNA recognition motif, RR	4e-04
2dnq_A	90	RNA-binding protein 4B; RRM domain,RBD, structural	4e-04
2dgu_A	103	Heterogeneous nuclear ribonucleoprotein Q; RRM dom	4e-04
2cph_A	107	RNA binding motif protein 19; RNA recognition moti	5e-04
1x4e_A	85	RNA binding motif, single-stranded interacting pro	5e-04
3bs9_A	87	Nucleolysin TIA-1 isoform P40; RNA recognition mot	5e-04
2cqb_A	102	Peptidyl-prolyl CIS-trans isomerase E; RNA recogni	6e-04
2dnz_A	95	Probable RNA-binding protein 23; RNA recognition m	7e-04
2ywk_A	95	Putative RNA-binding protein 11; RRM-domain, struc	7e-04
3s7r_A	87	Heterogeneous nuclear ribonucleoprotein A/B; ferre	7e-04
1whx_A	111	Hypothetical protein riken cDNA 1200009A02; RNA re	9e-04
2dgo_A	115	Cytotoxic granule-associated RNA binding protein 1	9e-04
2ad9_A	119	Polypyrimidine tract-binding protein 1; RBD, RRM,	9e-04

>2cq4_A RNA binding motif protein 23; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1 Length = 114

 Score = 54.2 bits (131), Expect = 7e-10
 Identities = 19/67 (28%), Positives = 31/67 (46%), Gaps = 3/67 (4%)

Query: 10 VVGLSPNATEKDIHEFFSHCGDPVHVEIIR---SGECGGTAYVTFSNAYALETAVLLSGA 66
           + L+     +D+ +FFS  G    V II    S    G AYV F    ++  A+ L+G 
Sbjct: 30 CMQLAARIRPRDLEDFFSAVGKVRDVRIISDRNSRRSKGIAYVEFCEIQSVPLAIGLTGQ 89

Query: 67 TIVDQPV 73
           ++  P+
Sbjct: 90 RLLGVPI 96

>1wel_A RNA-binding protein 12; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1 Length = 124

 Score = 53.7 bits (129), Expect = 1e-09
 Identities = 14/76 (18%), Positives = 31/76 (40%), Gaps = 3/76 (3%)

Query: 5   GYVAEVVGLSPNATEKDIHEFFSHCG---DPVHVEIIRSGECGGTAYVTFSNAYALETAV 61
           G+   + GL   A  K + +FF       D +++    +G+  G  +V F N    + A+
Sbjct: 25  GFCVYLKGLPFEAENKHVIDFFKKLDIVEDSIYIAYGPNGKATGEGFVEFRNEADYKAAL 84

Query: 62  LLSGATIVDQPVCIIR 77
                 + ++ + +  
Sbjct: 85  CRHKQYMGNRFIQVHP 100

>1fje_B Nucleolin RBD12, protein C23; RNP, RRM, RNA binding domain, RNA-protein complex, nucleolus, structural protein/RNA complex; NMR {Mesocricetus auratus} SCOP: d.58.7.1 d.58.7.1 PDB: 1rkj_A 2krr_A Length = 175

 Score = 54.5 bits (132), Expect = 1e-09
 Identities = 15/66 (22%), Positives = 29/66 (43%), Gaps = 2/66 (3%)

Query: 10 VVGLSPNATEKDIHEFFSHCGDPVHVEII--RSGECGGTAYVTFSNAYALETAVLLSGAT 67
          +  L+PN +  ++    S       + ++  R+G      YV F +A  LE A+ L+G  
Sbjct: 18 IGNLNPNKSVAELKVAISELFAKNDLAVVDVRTGTNRKFGYVDFESAEDLEKALELTGLK 77

Query: 68 IVDQPV 73
          +    +
Sbjct: 78 VFGNEI 83

>1fje_B Nucleolin RBD12, protein C23; RNP, RRM, RNA binding domain, RNA-protein complex, nucleolus, structural protein/RNA complex; NMR {Mesocricetus auratus} SCOP: d.58.7.1 d.58.7.1 PDB: 1rkj_A 2krr_A Length = 175

 Score = 39.9 bits (94), Expect = 2e-04
 Identities = 17/66 (25%), Positives = 28/66 (42%), Gaps = 5/66 (7%)

Query: 10  VVGLSPNATEKDIHEFFSHCGDPVHVEIIR-SGECGGTAYVTFSNAYALETAVL-LSGAT 67
              LS N TE ++ E F    +   + ++   G+  G AY+ F +    E  +    GA 
Sbjct: 104 AKNLSFNITEDELKEVFEDALE---IRLVSQDGKSKGIAYIEFKSEADAEKNLEEKQGAE 160

Query: 68  IVDQPV 73
           I  + V
Sbjct: 161 IDGRSV 166

>2hgn_A Heterogeneous nuclear ribonucleoprotein F; RNA recognition motif, G-tract, G-quadruplex, alternative splicing, RNA binding protein; NMR {Homo sapiens} PDB: 2kg1_A Length = 139

 Score = 52.9 bits (127), Expect = 3e-09
 Identities = 22/66 (33%), Positives = 28/66 (42%), Gaps = 3/66 (4%)

Query: 5   GYVAEVVGLSPNATEKDIHEFFSHCGDPVHVEIIR--SGECGGTAYVTFSNAYALETAVL 62
           G+   + GL   ATE DI+ FFS    PV V I     G   G A V F+       A+ 
Sbjct: 46  GHCVHMRGLPYKATENDIYNFFSPLN-PVRVHIEIGPDGRVTGEADVEFATHEEAVAAMS 104

Query: 63  LSGATI 68
              A +
Sbjct: 105 KDRANM 110

>2cpy_A RNA-binding protein 12; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1 Length = 114

 Score = 51.7 bits (124), Expect = 6e-09
 Identities = 13/60 (21%), Positives = 24/60 (40%), Gaps = 3/60 (5%)

Query: 12 GLSPNATEKDIHEFFSHCG---DPVHVEIIRSGECGGTAYVTFSNAYALETAVLLSGATI 68
           +  + T+ D+ +F        + VHV +  +G+  G A V F N      +  L    +
Sbjct: 22 NIPFSITKMDVLQFLEGIPVDENAVHVLVDNNGQGLGQALVQFKNEDDARKSERLHRKKL 81

>1wez_A HnRNP H', FTP-3, heterogeneous nuclear ribonucleoprotein H'; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.58.7.1 Length = 102

 Score = 50.9 bits (122), Expect = 9e-09
 Identities = 21/67 (31%), Positives = 28/67 (41%), Gaps = 3/67 (4%)

Query: 4  GGYVAEVVGLSPNATEKDIHEFFSHCGDPVHVEIIR--SGECGGTAYVTFSNAYALETAV 61
           G+   + GL   ATE DI+ FFS    P+ V I     G   G A V F+       A+
Sbjct: 14 TGHCVHMRGLPYRATENDIYNFFSPLN-PMRVHIEIGPDGRVTGEADVEFATHEDAVAAM 72

Query: 62 LLSGATI 68
              A +
Sbjct: 73 AKDKANM 79

>2dgw_A Probable RNA-binding protein 19; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 91

 Score = 50.0 bits (120), Expect = 1e-08
 Identities = 18/66 (27%), Positives = 32/66 (48%), Gaps = 3/66 (4%)

Query: 5  GYVAEVVGLSPNATEKDIHEFFSHCGDPVHVEIIR--SGECGGTAYVTFSNAYALETAVL 62
           +  ++ G   N TEK++ EF +    PV + I+R   G   G  +V FSN   ++ A+ 
Sbjct: 10 CHTVKLRGAPFNVTEKNVMEFLAPLK-PVAIRIVRNAHGNKTGYIFVDFSNEEEVKQALK 68

Query: 63 LSGATI 68
           +   +
Sbjct: 69 CNREYM 74

>3s8s_A Histone-lysine N-methyltransferase SETD1A; chromatin modification, transcription regulation, structural genomics, structural genomics consortium; 1.30A {Homo sapiens} Length = 110

 Score = 50.1 bits (120), Expect = 2e-08
 Identities = 13/68 (19%), Positives = 27/68 (39%), Gaps = 4/68 (5%)

Query: 10 VVGLSPNATEKDIHEFFSHCGDPVHVEIIR---SGECGGTAYVTFSNAYALETAV-LLSG 65
             L+ N  E  + +     G+   VEI+    + +  G A V F++    +  V  L  
Sbjct: 11 FARLNDNVRETFLKDMCRKYGEVEEVEILLHPRTRKHLGLARVLFTSTRGAKETVKNLHL 70

Query: 66 ATIVDQPV 73
           +++   +
Sbjct: 71 TSVMGNII 78

>1s79_A Lupus LA protein; RRM, alpha/beta, RNA binding protein, translation; NMR {Homo sapiens} SCOP: d.58.7.1 Length = 103

 Score = 49.7 bits (119), Expect = 2e-08
 Identities = 15/77 (19%), Positives = 33/77 (42%), Gaps = 2/77 (2%)

Query: 10 VVGLSPNATEKDIHEFFSHCGDPVHVEIIR--SGECGGTAYVTFSNAYALETAVLLSGAT 67
          + G   +AT  DI E+    G  +++++ R       G+ +V F +  + +  V   G  
Sbjct: 16 IKGFPTDATLDDIKEWLEDKGQVLNIQMRRTLHKAFKGSIFVVFDSIESAKKFVETPGQK 75

Query: 68 IVDQPVCIIRWGEYTDE 84
            +  + I+   +Y  +
Sbjct: 76 YKETDLLILFKDDYFAK 92

>3pgw_S U1-70K; protein-RNA complex, U1 snRNA, SM fold, SM core, RRM, splici SNRNPS, splicing factors; HET: DNA; 4.40A {Homo sapiens} PDB: 3cw1_K 2l5i_A 2l5j_A* Length = 437

 Score = 52.9 bits (126), Expect = 2e-08
 Identities = 16/95 (16%), Positives = 32/95 (33%), Gaps = 5/95 (5%)

Query: 10  VVGLSPNATEKDIHEFFSHCGDPVHVEIIR---SGECGGTAYVTFSNAYALETAVL-LSG 65
           V  ++ + TE  +   F   G    + ++    SG+  G A++ + +   + +A     G
Sbjct: 107 VARVNYDTTESKLRREFEVYGPIKRIHMVYSKRSGKPRGYAFIEYEHERDMHSAYKHADG 166

Query: 66  ATIVDQPVCIIRWGEYT-DEPNPWISSWGFDENSG 99
             I  + V +      T     P     G      
Sbjct: 167 KKIDGRRVLVDVERGRTVKGWRPRRLGGGLGGTRR 201

>3ucg_A Polyadenylate-binding protein 2; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG, protein structure initiative; HET: PGE; 1.95A {Homo sapiens} PDB: 3b4d_A 3b4m_A Length = 89

 Score = 49.0 bits (118), Expect = 2e-08
 Identities = 18/62 (29%), Positives = 30/62 (48%), Gaps = 4/62 (6%)

Query: 11 VG-LSPNATEKDIHEFFSHCGDPVHVEIIR---SGECGGTAYVTFSNAYALETAVLLSGA 66
          VG +   AT +++   F  CG    V I+    SG   G AY+ FS+  ++ T++ L  +
Sbjct: 11 VGNVDYGATAEELEAHFHGCGSVNRVTILCDKFSGHPKGFAYIEFSDKESVRTSLALDES 70

Query: 67 TI 68
            
Sbjct: 71 LF 72

>2dnn_A RNA-binding protein 12; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 109

 Score = 49.7 bits (119), Expect = 2e-08
 Identities = 14/77 (18%), Positives = 28/77 (36%), Gaps = 3/77 (3%)

Query: 3  AGGYVAEVVGLSPNATEKDIHEFFSHCGDPVHVEIIR--SGECGGTAYVTFSNAYALETA 60
                 V G+  +A E D+ +FF        V +++   G   G   V F +      A
Sbjct: 14 PDDLYVSVHGMPFSAMENDVRDFFHGL-RVDAVHLLKDHVGRNNGNGLVKFLSPQDTFEA 72

Query: 61 VLLSGATIVDQPVCIIR 77
          +  +   ++ + V +  
Sbjct: 73 LKRNRMLMIQRYVEVSP 89

>1wg5_A Heterogeneous nuclear ribonucleoprotein H; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.58.7.1 Length = 104

 Score = 49.4 bits (118), Expect = 3e-08
 Identities = 14/60 (23%), Positives = 27/60 (45%), Gaps = 3/60 (5%)

Query: 12 GLSPNATEKDIHEFFSHCG---DPVHVEIIRSGECGGTAYVTFSNAYALETAVLLSGATI 68
          GL    ++++I +FFS      + + + +   G   G A+V F++    E A+      I
Sbjct: 22 GLPFGCSKEEIVQFFSGLEIVPNGMTLPVDFQGRSTGEAFVQFASQEIAEKALKKHKERI 81

>2ytc_A PRE-mRNA-splicing factor RBM22; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 85

 Score = 48.8 bits (117), Expect = 3e-08
 Identities = 16/72 (22%), Positives = 32/72 (44%), Gaps = 6/72 (8%)

Query: 10 VVGLSPNATEKDIHEFFSHCGDPVHVEIIRSGECGGTAYVTFSNAYALETAV--LLSGAT 67
          V GL    TE D+   F   G+   + +++  +C   A++ F+   A E A     +   
Sbjct: 17 VGGLGDTITETDLRNHFYQFGEIRTITVVQRQQC---AFIQFATRQAAEVAAEKSFNKLI 73

Query: 68 IVDQPVCIIRWG 79
          +  + +  ++WG
Sbjct: 74 VNGRRL-NVKWG 84

>2db1_A Heterogeneous nuclear ribonucleoprotein F; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} Length = 118

 Score = 49.1 bits (117), Expect = 6e-08
 Identities = 17/78 (21%), Positives = 34/78 (43%), Gaps = 5/78 (6%)

Query: 5  GYVAEVVGLSPNATEKDIHEFFSHC---GDPVHVEII--RSGECGGTAYVTFSNAYALET 59
          GYV ++ GL  + + +D+  F S C        V  I  R G   G A+V   +   ++ 
Sbjct: 17 GYVVKLRGLPWSCSIEDVQNFLSDCTIHDGVAGVHFIYTREGRQSGEAFVELESEDDVKL 76

Query: 60 AVLLSGATIVDQPVCIIR 77
          A+     ++  + + + +
Sbjct: 77 ALKKDRESMGHRYIEVFK 94

>2lmi_A GRSF-1, G-rich sequence factor 1; G-rich RNA sequence binding factor, RNA binding domain, STRU genomics, joint center for structural genomics, JCSG; NMR {Homo sapiens} Length = 107

 Score = 48.7 bits (116), Expect = 6e-08
 Identities = 15/78 (19%), Positives = 32/78 (41%), Gaps = 5/78 (6%)

Query: 5  GYVAEVVGLSPNATEKDIHEFFSHCG-----DPVHVEIIRSGECGGTAYVTFSNAYALET 59
           ++    GL  + T +D+  FFS C      + +H  + R G+  G A +   +   ++ 
Sbjct: 11 VFLIRAQGLPWSCTMEDVLNFFSDCRIRNGENGIHFLLNRDGKRRGDALIEMESEQDVQK 70

Query: 60 AVLLSGATIVDQPVCIIR 77
          A+      +  + V +  
Sbjct: 71 ALEKHRMYMGQRYVEVYE 88

>2voo_A Lupus LA protein; RNA-binding protein, RNA recognition motif, systemic lupus erythematosus, phosphoprotein, RNA maturation; 1.8A {Homo sapiens} SCOP: a.4.5.46 d.58.7.1 PDB: 2von_A 2vod_A 2vop_A 1zh5_A 1yty_A 1s7a_A Length = 193

 Score = 50.2 bits (119), Expect = 7e-08
 Identities = 15/77 (19%), Positives = 34/77 (44%), Gaps = 2/77 (2%)

Query: 10  VVGLSPNATEKDIHEFFSHCGDPVHVEIIRSGECG--GTAYVTFSNAYALETAVLLSGAT 67
           + G   +AT  DI E+    G  +++++ R+      G+ +V F +  + +  V   G  
Sbjct: 114 IKGFPTDATLDDIKEWLEDKGQVLNIQMRRTLHKAFKGSIFVVFDSIESAKKFVETPGQK 173

Query: 68  IVDQPVCIIRWGEYTDE 84
             +  + I+   +Y  +
Sbjct: 174 YKETDLLILFKDDYFAK 190

>2hgm_A HNRPF protein, heterogeneous nuclear ribonucleoprotein F; RNA recognition motif, G-tract, G-quadruplex, alternative splicing, RNA binding protein; NMR {Homo sapiens} PDB: 2kg0_A Length = 126

 Score = 48.3 bits (115), Expect = 1e-07
 Identities = 16/76 (21%), Positives = 32/76 (42%), Gaps = 3/76 (3%)

Query: 5   GYVAEVVGLSPNATEKDIHEFFSHCGD-PVHVEIIR--SGECGGTAYVTFSNAYALETAV 61
                + GL    T+++I +FFS     P  + +     G+  G A+V F++    E A+
Sbjct: 42  DGFVRLRGLPFGCTKEEIVQFFSGLEIVPNGITLPVDPEGKITGEAFVQFASQELAEKAL 101

Query: 62  LLSGATIVDQPVCIIR 77
                 I  + + + +
Sbjct: 102 GKHKERIGHRYIEVFK 117

>2j76_E EIF-4B, EIF4B, eukaryotic translation initiation factor 4B; protein biosynthesis, RNA recognition motif, RNA binding domain, RRM, RBD, RNP; NMR {Homo sapiens} Length = 100

 Score = 47.6 bits (114), Expect = 1e-07
 Identities = 17/72 (23%), Positives = 31/72 (43%), Gaps = 5/72 (6%)

Query: 6  YVAEVVGLSPNATEKDIHEFFSHCGDPVHVEIIR----SGECGGTAYVTFSNAYALETAV 61
          Y A +  L  + TE+ I EFF        V + R         G  Y  F +  +L +A+
Sbjct: 20 YTAFLGNLPYDVTEESIKEFFRGLN-ISAVRLPREPSNPERLKGFGYAEFEDLDSLLSAL 78

Query: 62 LLSGATIVDQPV 73
           L+  ++ ++ +
Sbjct: 79 SLNEESLGNRRI 90

>2hgl_A HNRPF protein, heterogeneous nuclear ribonucleoprotein F; RNA recognition motif, G-tract, G-quadruplex, alternative, splicing, RNA binding protein; NMR {Homo sapiens} PDB: 2kfy_A Length = 136

 Score = 48.5 bits (115), Expect = 1e-07
 Identities = 16/78 (20%), Positives = 34/78 (43%), Gaps = 5/78 (6%)

Query: 5   GYVAEVVGLSPNATEKDIHEFFSHCG-----DPVHVEIIRSGECGGTAYVTFSNAYALET 59
           G+V ++ GL  + + +D+  F S C        VH    R G   G A+V   +   ++ 
Sbjct: 44  GFVVKLRGLPWSCSVEDVQNFLSDCTIHDGAAGVHFIYTREGRQSGEAFVELGSEDDVKM 103

Query: 60  AVLLSGATIVDQPVCIIR 77
           A+     ++  + + + +
Sbjct: 104 ALKKDRESMGHRYIEVFK 121

>2jwn_A Embryonic polyadenylate-binding protein 2-B; epabp2, poly(A) binding, structural genomics, protein structure initiative, PSI-2; NMR {Xenopus laevis} Length = 124

 Score = 48.2 bits (115), Expect = 1e-07
 Identities = 17/62 (27%), Positives = 29/62 (46%), Gaps = 4/62 (6%)

Query: 11  VG-LSPNATEKDIHEFFSHCGDPVHVEIIR---SGECGGTAYVTFSNAYALETAVLLSGA 66
           VG +   +T +D+   FS CG    + I+    SG   G AY+ F+   +++ AV +   
Sbjct: 41  VGNVDYGSTAQDLEAHFSSCGSINRITILCDKFSGHPKGYAYIEFAERNSVDAAVAMDET 100

Query: 67  TI 68
             
Sbjct: 101 VF 102

>2la4_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RNA recognition, stress granules, nucleus, RNA-binding, transcription; NMR {Saccharomyces cerevisiae} Length = 101

 Score = 47.3 bits (113), Expect = 2e-07
 Identities = 10/69 (14%), Positives = 23/69 (33%), Gaps = 5/69 (7%)

Query: 12 GLSPNATEKDIHEFFSHCGDPVHVEIIRSGECGGTAYVTFSNAYALETAVL-LSGATIVD 70
           +   ATE D+   F + G  +  +      C    ++ +         ++ L+      
Sbjct: 34 NIPHFATEADLIPLFQNFGFILDFKHYPEKGCC---FIKYDTHEQAAVCIVALANFPFQG 90

Query: 71 QPVCIIRWG 79
          + +    WG
Sbjct: 91 RNLR-TGWG 98

>2ghp_A U4/U6 snRNA-associated splicing factor PRP24; RNA chaperone, RNA binding domain, RNA recognition motif, SP factor, snRNP, spliceosome; 2.70A {Saccharomyces cerevisiae} SCOP: d.58.7.1 d.58.7.1 d.58.7.1 PDB: 2go9_A 2kh9_A Length = 292

 Score = 49.2 bits (118), Expect = 3e-07
 Identities = 10/63 (15%), Positives = 26/63 (41%), Gaps = 1/63 (1%)

Query: 12  GLSPNATEKDIHEFFSHCGDPVHVEIIR-SGECGGTAYVTFSNAYALETAVLLSGATIVD 70
            L  +  +  ++++F HCG  +HV++     +    A + F+       A+  +   +  
Sbjct: 48  NLPKSYNQNKVYKYFKHCGPIIHVDVADSLKKNFRFARIEFARYDGALAAITKTHKVVGQ 107

Query: 71  QPV 73
             +
Sbjct: 108 NEI 110

>2ghp_A U4/U6 snRNA-associated splicing factor PRP24; RNA chaperone, RNA binding domain, RNA recognition motif, SP factor, snRNP, spliceosome; 2.70A {Saccharomyces cerevisiae} SCOP: d.58.7.1 d.58.7.1 d.58.7.1 PDB: 2go9_A 2kh9_A Length = 292

 Score = 42.7 bits (101), Expect = 5e-05
 Identities = 12/69 (17%), Positives = 26/69 (37%), Gaps = 5/69 (7%)

Query: 10  VVGLSPNAT-EKDIHEFFSHCGDPVHVEIIR----SGECGGTAYVTFSNAYALETAVLLS 64
           +  LS     E  + E F   G    + I             A++ F N  + E A+ ++
Sbjct: 215 IRNLSTELLDENLLRESFEGFGSIEKINIPAGQKEHSFNNCCAFMVFENKDSAERALQMN 274

Query: 65  GATIVDQPV 73
            + + ++ +
Sbjct: 275 RSLLGNREI 283

>1x4c_A Splicing factor, arginine/serine-rich 1; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1 Length = 108

 Score = 46.7 bits (111), Expect = 4e-07
 Identities = 16/77 (20%), Positives = 25/77 (32%), Gaps = 7/77 (9%)

Query: 4  GGYVAEVVGLSPNATEKDIHEFFSHCGDPVHVEIIRSGECGGTAYVTFSNAYALETAV-L 62
                V GL P+ + +D+ +     GD  + ++ R G       V F     +  AV  
Sbjct: 14 SENRVVVSGLPPSGSWQDLKDHMREAGDVCYADVYRDGT----GVVEFVRKEDMTYAVRK 69

Query: 63 LSGATIVDQP--VCIIR 77
          L              IR
Sbjct: 70 LDNTKFRSHEGETAYIR 86

>1wi8_A EIF-4B, eukaryotic translation initiation factor 4B; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Homo sapiens} SCOP: d.58.7.1 Length = 104

 Score = 46.5 bits (111), Expect = 4e-07
 Identities = 17/72 (23%), Positives = 31/72 (43%), Gaps = 5/72 (6%)

Query: 6  YVAEVVGLSPNATEKDIHEFFSHCGDPVHVEIIR----SGECGGTAYVTFSNAYALETAV 61
          Y A +  L  + TE+ I EFF        V + R         G  Y  F +  +L +A+
Sbjct: 16 YTAFLGNLPYDVTEESIKEFFRGLN-ISAVRLPREPSNPERLKGFGYAEFEDLDSLLSAL 74

Query: 62 LLSGATIVDQPV 73
           L+  ++ ++ +
Sbjct: 75 SLNEESLGNKRI 86

>3beg_B Splicing factor, arginine/serine-rich 1; kinase, SR protein kinase, SR protein, PRE-mRNA splicing, at binding, chromosome partition; HET: SEP ANP; 2.90A {Homo sapiens} SCOP: d.58.7.1 PDB: 2o3d_A 1wg4_A Length = 115

 Score = 46.4 bits (110), Expect = 5e-07
 Identities = 16/85 (18%), Positives = 25/85 (29%), Gaps = 5/85 (5%)

Query: 4  GGYVAEVVGLSPNATEKDIHEFFSHCGDPVHVEIIRSGECGGTAYVTFSNAYALETAV-L 62
                V GL P+ + +D+ +     GD  + ++ R G       V F     +  AV  
Sbjct: 15 SENRVVVSGLPPSGSWQDLKDHMREAGDVCYADVYRDGT----GVVEFVRKEDMTYAVRK 70

Query: 63 LSGATIVDQPVCIIRWGEYTDEPNP 87
          L                   D P  
Sbjct: 71 LDNTKFRSHEGETAYIRVKVDGPRS 95

>2dng_A Eukaryotic translation initiation factor 4H; RRM domain, RBD, structural genomics, NPPSFA; NMR {Mus musculus} Length = 103

 Score = 46.1 bits (110), Expect = 5e-07
 Identities = 19/73 (26%), Positives = 30/73 (41%), Gaps = 4/73 (5%)

Query: 6  YVAEVVGLSPNATEKDIHEFFSHCGDPVHVEIIRSGECG---GTAYVTFSNAYALETAVL 62
          Y A V  L  N  + DI   F        V ++R  +     G  YV F    +L+ A+ 
Sbjct: 16 YTAYVGNLPFNTVQGDIDAIFKDLS-IRSVRLVRDKDTDKFKGFCYVEFDEVDSLKEALT 74

Query: 63 LSGATIVDQPVCI 75
            GA + D+ + +
Sbjct: 75 YDGALLGDRSLRV 87

>2cqp_A RNA-binding protein 12; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1 Length = 98

 Score = 45.7 bits (109), Expect = 6e-07
 Identities = 15/68 (22%), Positives = 25/68 (36%), Gaps = 4/68 (5%)

Query: 10 VVGLSPNATEKDIHEFFSHCG---DPVHVEIIRSGECGGTAYVTFSNAYALETAVL-LSG 65
          V  +    +  +I +FF         V ++    G   G A V F +      AV+ L+ 
Sbjct: 20 VQNMPFTVSIDEILDFFYGYQVIPGSVCLKYNEKGMPTGEAMVAFESRDEATAAVIDLND 79

Query: 66 ATIVDQPV 73
            I  + V
Sbjct: 80 RPIGSRKV 87

>2ek1_A RNA-binding protein 12; RNA recognition motif, dimer, structural genomics, NPPSFA, national project on protein structural and functional analyses; 2.00A {Homo sapiens} PDB: 2ek6_A Length = 95

 Score = 45.0 bits (107), Expect = 8e-07
 Identities = 12/55 (21%), Positives = 19/55 (34%), Gaps = 3/55 (5%)

Query: 10 VVGLSPNATEKDIHEFFSHCG---DPVHVEIIRSGECGGTAYVTFSNAYALETAV 61
          V  +    +  +I +FF         V ++    G   G A V F +      AV
Sbjct: 20 VQNMPFTVSIDEILDFFYGYQVIPGSVCLKYNEKGMPTGEAMVAFESRDEATAAV 74

>4a8x_A RNA-binding protein with serine-rich domain 1; transcription, splicing, RNA processing, nonsense mediated D NMD, HDAC, histone deacetylation; 1.90A {Homo sapiens} Length = 88

 Score = 44.8 bits (107), Expect = 9e-07
 Identities = 16/56 (28%), Positives = 23/56 (41%), Gaps = 4/56 (7%)

Query: 10 VVGLSPNATEKDIHEFFSHCGDPVHVEIIR----SGECGGTAYVTFSNAYALETAV 61
          +  L+ N T+  I E FS  G    +++           G AYV F N    E A+
Sbjct: 9  IGRLTRNVTKDHIMEIFSTYGKIKMIDMPVERMHPHLSKGYAYVEFENPDEAEKAL 64

>1fj7_A Nucleolin RBD1, protein C23; RNP, RRM, RNA binding domain, nucleolus, structural protein; NMR {Mesocricetus auratus} SCOP: d.58.7.1 Length = 101

 Score = 44.9 bits (107), Expect = 1e-06
 Identities = 16/66 (24%), Positives = 30/66 (45%), Gaps = 3/66 (4%)

Query: 11 VG-LSPNATEKDIHEFFSHCGDPVHVEII--RSGECGGTAYVTFSNAYALETAVLLSGAT 67
          +G L+PN +  ++    S       + ++  R+G      YV F +A  LE A+ L+G  
Sbjct: 22 IGNLNPNKSVAELKVAISELFAKNDLAVVDVRTGTNRKFGYVDFESAEDLEKALELTGLK 81

Query: 68 IVDQPV 73
          +    +
Sbjct: 82 VFGNEI 87

>2dha_A FLJ20171 protein; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 123

 Score = 45.3 bits (107), Expect = 1e-06
 Identities = 12/70 (17%), Positives = 24/70 (34%), Gaps = 6/70 (8%)

Query: 5  GYVAEVVGLSPNATEKDIHEFFSHCG------DPVHVEIIRSGECGGTAYVTFSNAYALE 58
            +  + GL   AT +++  FF          + +       G   G A+V F+     +
Sbjct: 23 QVIVRMRGLPFTATAEEVVAFFGQHCPITGGKEGILFVTYPDGRPTGDAFVLFACEEYAQ 82

Query: 59 TAVLLSGATI 68
           A+      +
Sbjct: 83 NALRKHKDLL 92

>1h2v_Z 20 kDa nuclear CAP binding protein; CAP-binding-complex, RNP domain, MIF4G domain, RNA maturation, RNA export, nuclear protein, RNA-binding; 2.0A {Homo sapiens} SCOP: d.58.7.1 PDB: 1h2u_X* 1h2t_Z 1n52_B* 1n54_B 3fex_B 3fey_B 1h6k_X Length = 156

 Score = 45.6 bits (108), Expect = 2e-06
 Identities = 17/70 (24%), Positives = 30/70 (42%), Gaps = 4/70 (5%)

Query: 10  VVGLSPNATEKDIHEFFSHCGDPVHVEIIR---SGECGGTAYVTFSNAYALETAV-LLSG 65
           V  LS   TE+ I+E FS  GD   + +          G  +V + +    E A+  ++G
Sbjct: 44  VGNLSFYTTEEQIYELFSKSGDIKKIIMGLDKMKKTACGFCFVEYYSRADAENAMRYING 103

Query: 66  ATIVDQPVCI 75
             + D+ +  
Sbjct: 104 TRLDDRIIRT 113

>2e44_A Insulin-like growth factor 2 mRNA binding protein 3; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 96

 Score = 44.4 bits (105), Expect = 2e-06
 Identities = 7/52 (13%), Positives = 17/52 (32%)

Query: 10 VVGLSPNATEKDIHEFFSHCGDPVHVEIIRSGECGGTAYVTFSNAYALETAV 61
          +  + P+   + +       G     E + +        VT+S+      A+
Sbjct: 20 IRNIPPHLQWEVLDSLLVQYGVVESCEQVNTDSETAVVNVTYSSKDQARQAL 71

>1b7f_A Protein (SXL-lethal protein), RNA (5'-R(P*GP*UP*UP*GP*UP*UP*UP*UP*UP*UP*UP*U)-3; splicing regulation, RNP domain, RNA complex; 2.60A {Drosophila melanogaster} SCOP: d.58.7.1 d.58.7.1 PDB: 3sxl_A* 1sxl_A 2sxl_A Length = 168

 Score = 45.6 bits (109), Expect = 2e-06
 Identities = 15/66 (22%), Positives = 34/66 (51%), Gaps = 4/66 (6%)

Query: 12 GLSPNATEKDIHEFFSHCGDPVHVEIIR---SGECGGTAYVTFSNAYALETAV-LLSGAT 67
           L  + T+++++  F   G      I+R   +G   G A+V F++    + A+ +L+G T
Sbjct: 10 YLPQDMTDRELYALFRAIGPINTCRIMRDYKTGYSYGYAFVDFTSEMDSQRAIKVLNGIT 69

Query: 68 IVDQPV 73
          + ++ +
Sbjct: 70 VRNKRL 75

>2cqi_A Nucleolysin TIAR; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, ST genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1 Length = 103

 Score = 43.8 bits (104), Expect = 3e-06
 Identities = 19/69 (27%), Positives = 28/69 (40%), Gaps = 9/69 (13%)

Query: 11 VG-LSPNATEKDIHEFFSHCGDPVHVEIIRSGECG-GTAYVTFSN----AYALETAVLLS 64
          VG LS + TE  I + FS  G     ++I          +V F      A AL     ++
Sbjct: 20 VGNLSRDVTEVLILQLFSQIGPCKSCKMITEHTSNDPYCFVEFYEHRDAAAALAA---MN 76

Query: 65 GATIVDQPV 73
          G  I+ + V
Sbjct: 77 GRKILGKEV 85

>3lqv_A PRE-mRNA branch site protein P14; cysless mutant, PRE-mRNA splicing, adenine, mRNA processing, nucleus, phosphoprotein, RNA-binding; HET: ADE; 2.38A {Homo sapiens} PDB: 2f9d_A 2f9j_A 2fho_B Length = 115

 Score = 43.9 bits (104), Expect = 4e-06
 Identities = 12/52 (23%), Positives = 25/52 (48%)

Query: 10 VVGLSPNATEKDIHEFFSHCGDPVHVEIIRSGECGGTAYVTFSNAYALETAV 61
          +  L    T +++++ F   G    + +  + E  GTAYV + + +  + AV
Sbjct: 13 IRNLPYKITAEEMYDIFGKYGPIRQIRVGNTPETRGTAYVVYEDIFDAKNAV 64

>1fxl_A Paraneoplastic encephalomyelitis antigen HUD; protein-RNA complex, AU-rich element, transcription/RNA complex; 1.80A {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 1g2e_A 1fnx_H 1d8z_A 1d9a_A 3hi9_A Length = 167

 Score = 44.9 bits (107), Expect = 4e-06
 Identities = 13/66 (19%), Positives = 30/66 (45%), Gaps = 4/66 (6%)

Query: 12 GLSPNATEKDIHEFFSHCGDPVHVEIIR---SGECGGTAYVTFSNAYALETAV-LLSGAT 67
           L  N T+++    F   G+    +++R   +G+  G  +V + +    E A+  L+G  
Sbjct: 9  YLPQNMTQEEFRSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKAINTLNGLR 68

Query: 68 IVDQPV 73
          +  + +
Sbjct: 69 LQTKTI 74

>1fxl_A Paraneoplastic encephalomyelitis antigen HUD; protein-RNA complex, AU-rich element, transcription/RNA complex; 1.80A {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 1g2e_A 1fnx_H 1d8z_A 1d9a_A 3hi9_A Length = 167

 Score = 37.9 bits (89), Expect = 8e-04
 Identities = 14/55 (25%), Positives = 23/55 (41%), Gaps = 3/55 (5%)

Query: 10  VVGLSPNATEKDIHEFFSHCGDPVHVEIIRSGECG---GTAYVTFSNAYALETAV 61
           V GL    T+K++ + FS  G  +   I+     G   G  ++ F      E A+
Sbjct: 93  VSGLPKTMTQKELEQLFSQYGRIITSRILVDQVTGVSRGVGFIRFDKRIEAEEAI 147

>2f3j_A RNA and export factor binding protein 2; RRM domain, RBD domain., transport protein; NMR {Mus musculus} Length = 177

 Score = 44.8 bits (106), Expect = 4e-06
 Identities = 16/54 (29%), Positives = 21/54 (38%), Gaps = 2/54 (3%)

Query: 10  VVGLSPNATEKDIHEFFSHCGDPVHVEII--RSGECGGTAYVTFSNAYALETAV 61
           V  L    ++ DI E F+  G      +   RSG   GTA V F        A+
Sbjct: 93  VSNLDFGVSDADIQELFAEFGTLKKAAVDYDRSGRSLGTADVHFERRADALKAM 146

>3ex7_B RNA-binding protein 8A; protein-RNA complex, mRNA processing, mRNA splicing, mRNA transport, nonsense-mediated mRNA decay, nucleus; HET: ADP; 2.30A {Homo sapiens} PDB: 2j0q_D* Length = 126

 Score = 43.9 bits (104), Expect = 4e-06
 Identities = 19/68 (27%), Positives = 35/68 (51%), Gaps = 4/68 (5%)

Query: 10 VVGLSPNATEKDIHEFFSHCGDPVHVEII---RSGECGGTAYVTFSNAYALETAV-LLSG 65
          V G+   ATE+DIH+ F+  G+  ++ +    R+G   G   V +      + A+  L+G
Sbjct: 27 VTGVHEEATEEDIHDKFAEYGEIKNIHLNLDRRTGYLKGYTLVEYETYKEAQAAMEGLNG 86

Query: 66 ATIVDQPV 73
            ++ QP+
Sbjct: 87 QDLMGQPI 94

>2yh0_A Splicing factor U2AF 65 kDa subunit; PRE-mRNA splicing, transcription, RNA binding protein, mRNA processing; NMR {Homo sapiens} PDB: 2yh1_A Length = 198

 Score = 45.0 bits (107), Expect = 5e-06
 Identities = 16/101 (15%), Positives = 30/101 (29%), Gaps = 8/101 (7%)

Query: 10  VVGLSPNATEKDIHEFFSHCGDPVHVEIIRSGECG--------GTAYVTFSNAYALETAV 61
           V  +    TE+ + +FF+       +                   A++ F +      A+
Sbjct: 9   VGNIPFGITEEAMMDFFNAQMRLGGLTQAPGNPVLAVQINQDKNFAFLEFRSVDETTQAM 68

Query: 62  LLSGATIVDQPVCIIRWGEYTDEPNPWISSWGFDENSGSTT 102
              G     Q + I R  +Y   P    +   +     ST 
Sbjct: 69  AFDGIIFQGQSLKIRRPHDYQPLPGMSENPSVYVPGVVSTV 109

>2yh0_A Splicing factor U2AF 65 kDa subunit; PRE-mRNA splicing, transcription, RNA binding protein, mRNA processing; NMR {Homo sapiens} PDB: 2yh1_A Length = 198

 Score = 42.3 bits (100), Expect = 4e-05
 Identities = 11/68 (16%), Positives = 28/68 (41%), Gaps = 4/68 (5%)

Query: 10  VVGLSPNATEKDIHEFFSHCGDPVHVEIIR---SGECGGTAYVTFSNAYALETAVL-LSG 65
           + GL     +  + E  +  G      +++   +G   G A+  + +    + A+  L+G
Sbjct: 119 IGGLPNYLNDDQVKELLTSFGPLKAFNLVKDSATGLSKGYAFCEYVDINVTDQAIAGLNG 178

Query: 66  ATIVDQPV 73
             + D+ +
Sbjct: 179 MQLGDKKL 186

>3md3_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RNP, RBD, poly(U) binding, tandem, acetylation, cytopla nucleus; 2.70A {Saccharomyces cerevisiae} Length = 166

 Score = 44.4 bits (106), Expect = 5e-06
 Identities = 17/70 (24%), Positives = 31/70 (44%), Gaps = 10/70 (14%)

Query: 11 VG-LSPNATEKDIHEFFSHCGDPVHVEIIR--SGECGGTAYVTFSN----AYALETAVLL 63
          VG L    TE  + ++F   G   +++I+   + +    A+V +        AL+T   L
Sbjct: 5  VGNLDKAITEDILKQYFQVGGPIANIKIMIDKNNKNVNYAFVEYHQSHDANIALQT---L 61

Query: 64 SGATIVDQPV 73
          +G  I +  V
Sbjct: 62 NGKQIENNIV 71

>3md3_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RNP, RBD, poly(U) binding, tandem, acetylation, cytopla nucleus; 2.70A {Saccharomyces cerevisiae} Length = 166

 Score = 37.9 bits (89), Expect = 9e-04
 Identities = 12/68 (17%), Positives = 30/68 (44%), Gaps = 5/68 (7%)

Query: 11  VG-LSPNATEKDIHEFFSHCGDPVHVEIIRSGECG---GTAYVTFSNAYALETAVL-LSG 65
           VG L+ N  ++ +   F      +   ++   + G   G  +V+F++    + A+  + G
Sbjct: 92  VGDLNVNVDDETLRNAFKDFPSYLSGHVMWDMQTGSSRGYGFVSFTSQDDAQNAMDSMQG 151

Query: 66  ATIVDQPV 73
             +  +P+
Sbjct: 152 QDLNGRPL 159

>2qfj_A FBP-interacting repressor; protein-DNA complex; HET: DNA; 2.10A {Homo sapiens} PDB: 3uwt_A 2kxf_A 2kxh_A Length = 216

 Score = 45.0 bits (107), Expect = 5e-06
 Identities = 9/66 (13%), Positives = 26/66 (39%), Gaps = 4/66 (6%)

Query: 12  GLSPNATEKDIHEFFSHCGDPVHVEIIR---SGECGGTAYVTFSNAYALETAV-LLSGAT 67
            +     E  I + F+  G    +++     + +  G A+V +    A + A+  ++   
Sbjct: 35  SIYYELGEDTIRQAFAPFGPIKSIDMSWDSVTMKHKGFAFVEYEVPEAAQLALEQMNSVM 94

Query: 68  IVDQPV 73
           +  + +
Sbjct: 95  LGGRNI 100

>2qfj_A FBP-interacting repressor; protein-DNA complex; HET: DNA; 2.10A {Homo sapiens} PDB: 3uwt_A 2kxf_A 2kxh_A Length = 216

 Score = 41.5 bits (98), Expect = 7e-05
 Identities = 12/68 (17%), Positives = 26/68 (38%), Gaps = 4/68 (5%)

Query: 10  VVGLSPNATEKDIHEFFSHCGDPVHVEIIRSGECG---GTAYVTFSNAYALETAVL-LSG 65
           V  +  + ++ DI   F   G      + R    G   G  ++ +  A + + AV  ++ 
Sbjct: 130 VASVHQDLSDDDIKSVFEAFGKIKSATLARDPTTGKHKGYGFIEYEKAQSSQDAVSSMNL 189

Query: 66  ATIVDQPV 73
             +  Q +
Sbjct: 190 FDLGGQYL 197

>2cjk_A Nuclear polyadenylated RNA-binding protein 4; HRP1, RNA-binding, RNA processing, mRNA processing, nonsense-mediated mRNA decay, cleavage; NMR {Saccharomyces cerevisiae} PDB: 2km8_C Length = 167

 Score = 44.4 bits (106), Expect = 5e-06
 Identities = 15/65 (23%), Positives = 30/65 (46%), Gaps = 3/65 (4%)

Query: 12  GLSPNATEKDIHEFFSHCGDPVHVEIIRSGECG---GTAYVTFSNAYALETAVLLSGATI 68
           G+ P+   K+  EFFS  G  +  +++   + G   G  +VT+ +A A++          
Sbjct: 94  GIGPDVRPKEFEEFFSQWGTIIDAQLMLDKDTGQSRGFGFVTYDSADAVDRVCQNKFIDF 153

Query: 69  VDQPV 73
            D+ +
Sbjct: 154 KDRKI 158

>2cjk_A Nuclear polyadenylated RNA-binding protein 4; HRP1, RNA-binding, RNA processing, mRNA processing, nonsense-mediated mRNA decay, cleavage; NMR {Saccharomyces cerevisiae} PDB: 2km8_C Length = 167

 Score = 43.3 bits (103), Expect = 1e-05
 Identities = 12/53 (22%), Positives = 28/53 (52%), Gaps = 3/53 (5%)

Query: 12 GLSPNATEKDIHEFFSHCGDPVHVEIIR---SGECGGTAYVTFSNAYALETAV 61
          GL+ + TE ++ E+F   G    ++I++   +G   G  +++F    +++  V
Sbjct: 10 GLNWDTTEDNLREYFGKYGTVTDLKIMKDPATGRSRGFGFLSFEKPSSVDEVV 62

>2fy1_A RNA-binding motif protein, Y chromosome, family 1 member A1; RNA binding protein, structure, protein-RNA complex, RNA stem-loop, structural protein/RNA complex; NMR {Homo sapiens} Length = 116

 Score = 43.1 bits (102), Expect = 6e-06
 Identities = 15/54 (27%), Positives = 24/54 (44%), Gaps = 2/54 (3%)

Query: 10 VVGLSPNATEKDIHEFFSHCGDPVHVEII--RSGECGGTAYVTFSNAYALETAV 61
          + GL+    EK +   F   G    V +I  R+ +  G A++TF N    + A 
Sbjct: 12 IGGLNRETNEKMLKAVFGKHGPISEVLLIKDRTSKSRGFAFITFENPADAKNAA 65

>2do4_A Squamous cell carcinoma antigen recognized by T- cells 3; RRM domaim, RDB, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 100

 Score = 42.7 bits (101), Expect = 7e-06
 Identities = 14/54 (25%), Positives = 26/54 (48%), Gaps = 2/54 (3%)

Query: 10 VVGLSPNATEKDIHEFFSHCGDPVHVEII--RSGECGGTAYVTFSNAYALETAV 61
          + GL  + T++++ E     G    + ++  R+G+  G AYV + N      AV
Sbjct: 22 ISGLPFSCTKEELEEICKAHGTVKDLRLVTNRAGKPKGLAYVEYENESQASQAV 75

>2jvr_A Nucleolar protein 3; RNA recognition motif, nucleus, phosphorylation, ribonucleoprotein, ribosome biogenesis, RNA-binding; NMR {Saccharomyces cerevisiae} PDB: 2osr_A Length = 111

 Score = 42.9 bits (101), Expect = 7e-06
 Identities = 8/65 (12%), Positives = 21/65 (32%), Gaps = 1/65 (1%)

Query: 10 VVGLSPNATEKDIHEFFSHCGDPVHVEIIRSGECGGTAYVTFSNAYALETAV-LLSGATI 68
          +  L    + +D+ +             + + +  GT  + F +   L  A+  L+    
Sbjct: 33 MKNLPEGCSWQDLKDLARENSLETTFSSVNTRDFDGTGALEFPSEEILVEALERLNNIEF 92

Query: 69 VDQPV 73
              +
Sbjct: 93 RGSVI 97

>2g4b_A Splicing factor U2AF 65 kDa subunit; protein-RNA complex, RNA splicing factor, RNA recognition motif, RNA binding protein/RNA complex; 2.50A {Homo sapiens} PDB: 2u2f_A Length = 172

 Score = 43.8 bits (104), Expect = 9e-06
 Identities = 13/84 (15%), Positives = 25/84 (29%), Gaps = 8/84 (9%)

Query: 12 GLSPNATEKDIHEFFSHCGDPVHVEIIRSGECG--------GTAYVTFSNAYALETAVLL 63
           +    TE+ + +FF+       +                   A++ F +      A+  
Sbjct: 11 NIPFGITEEAMMDFFNAQMRLGGLTQAPGNPVLAVQINQDKNFAFLEFRSVDETTQAMAF 70

Query: 64 SGATIVDQPVCIIRWGEYTDEPNP 87
           G     Q + I R  +Y   P  
Sbjct: 71 DGIIFQGQSLKIRRPHDYQPLPGA 94

>2g4b_A Splicing factor U2AF 65 kDa subunit; protein-RNA complex, RNA splicing factor, RNA recognition motif, RNA binding protein/RNA complex; 2.50A {Homo sapiens} PDB: 2u2f_A Length = 172

 Score = 42.6 bits (101), Expect = 2e-05
 Identities = 11/68 (16%), Positives = 28/68 (41%), Gaps = 4/68 (5%)

Query: 10  VVGLSPNATEKDIHEFFSHCGDPVHVEIIR---SGECGGTAYVTFSNAYALETAVL-LSG 65
           + GL     +  + E  +  G      +++   +G   G A+  + +    + A+  L+G
Sbjct: 99  IGGLPNYLNDDQVKELLTSFGPLKAFNLVKDSATGLSKGYAFCEYVDINVTDQAIAGLNG 158

Query: 66  ATIVDQPV 73
             + D+ +
Sbjct: 159 MQLGDKKL 166

>1l3k_A Heterogeneous nuclear ribonucleoprotein A1; nuclear protein hnRNP A1, RNA-recognition motif, RNA- binding, UP1, RNA binding protein; 1.10A {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 1u1k_A* 1u1l_A* 1u1m_A* 1u1n_A* 1u1o_A 1u1p_A* 1u1q_A 1u1r_A* 1pgz_A* 1ha1_A 1po6_A* 2up1_A* 1up1_A Length = 196

 Score = 43.8 bits (104), Expect = 1e-05
 Identities = 11/60 (18%), Positives = 24/60 (40%), Gaps = 3/60 (5%)

Query: 12 GLSPNATEKDIHEFFSHCGDPVHVEIIR---SGECGGTAYVTFSNAYALETAVLLSGATI 68
          GLS   T++ +   F   G      ++R   +    G  +VT++    ++ A+      +
Sbjct: 20 GLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTYATVEEVDAAMNARPHKV 79

>1l3k_A Heterogeneous nuclear ribonucleoprotein A1; nuclear protein hnRNP A1, RNA-recognition motif, RNA- binding, UP1, RNA binding protein; 1.10A {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 1u1k_A* 1u1l_A* 1u1m_A* 1u1n_A* 1u1o_A 1u1p_A* 1u1q_A 1u1r_A* 1pgz_A* 1ha1_A 1po6_A* 2up1_A* 1up1_A Length = 196

 Score = 43.4 bits (103), Expect = 1e-05
 Identities = 15/65 (23%), Positives = 30/65 (46%), Gaps = 3/65 (4%)

Query: 12  GLSPNATEKDIHEFFSHCGDPVHVEIIR---SGECGGTAYVTFSNAYALETAVLLSGATI 68
           G+  +  E  + ++F   G    +EI+    SG+  G A+VTF +  +++  V+    T+
Sbjct: 111 GIKEDTEEHHLRDYFEQYGKIEVIEIMTDRGSGKKRGFAFVTFDDHDSVDKIVIQKYHTV 170

Query: 69  VDQPV 73
                
Sbjct: 171 NGHNC 175

>2hzc_A Splicing factor U2AF 65 kDa subunit; RNA splicing, RRM, RNA recognition, alternative conformation binding protein; HET: P6G; 1.47A {Homo sapiens} PDB: 1u2f_A Length = 87

 Score = 41.6 bits (98), Expect = 1e-05
 Identities = 11/72 (15%), Positives = 22/72 (30%), Gaps = 9/72 (12%)

Query: 11 VG-LSPNATEKDIHEFFSHCGDPVHVEIIRSGEC--------GGTAYVTFSNAYALETAV 61
          VG +    TE+ + +FF+       +                   A++ F +      A+
Sbjct: 11 VGNIPFGITEEAMMDFFNAQMRLGGLTQAPGNPVLAVQINQDKNFAFLEFRSVDETTQAM 70

Query: 62 LLSGATIVDQPV 73
             G     Q +
Sbjct: 71 AFDGIIFQGQSL 82

>2div_A TRNA selenocysteine associated protein; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 99

 Score = 41.9 bits (99), Expect = 1e-05
 Identities = 17/56 (30%), Positives = 26/56 (46%), Gaps = 5/56 (8%)

Query: 11 VG-LSPNATEKDIHEFFSHCGDPV-HVEIIR---SGECGGTAYVTFSNAYALETAV 61
          +G L P   E  I   F+  G+ V  V+IIR   +G   G  +V F++    E  +
Sbjct: 14 MGDLEPYMDENFISRAFATMGETVMSVKIIRNRLTGIPAGYCFVEFADLATAEKCL 69

>1rk8_A CG8781-PA, CG8781-PA protein; mRNA processing, RRM, RBD, NMD, oskar mRNA localization, translation; 1.90A {Drosophila melanogaster} SCOP: d.58.7.1 PDB: 1hl6_A 2x1g_A Length = 165

 Score = 43.3 bits (102), Expect = 1e-05
 Identities = 18/68 (26%), Positives = 29/68 (42%), Gaps = 4/68 (5%)

Query: 10  VVGLSPNATEKDIHEFFSHCGDPVHVEII---RSGECGGTAYVTFSNAYALETAV-LLSG 65
           V  +   A E +I E F   G+  ++ +    R+G   G A V +        A   L+G
Sbjct: 77  VTSIHEEAQEDEIQEKFCDYGEIKNIHLNLDRRTGFSKGYALVEYETHKQALAAKEALNG 136

Query: 66  ATIVDQPV 73
           A I+ Q +
Sbjct: 137 AEIMGQTI 144

>2xs2_A Deleted in azoospermia-like; RNA binding protein-RNA complex; 1.35A {Mus musculus} PDB: 2xs7_A 2xs5_A 2xsf_A Length = 102

 Score = 41.8 bits (99), Expect = 1e-05
 Identities = 16/52 (30%), Positives = 25/52 (48%), Gaps = 2/52 (3%)

Query: 12 GLSPNATEKDIHEFFSHCGDPVHVEII--RSGECGGTAYVTFSNAYALETAV 61
          G+     E +I  FF+  G    V+II  R+G   G  +V+F N   ++  V
Sbjct: 16 GIDVRMDETEIRSFFARYGSVKEVKIITDRTGVSKGYGFVSFYNDVDVQKIV 67

>1x4g_A Nucleolysin TIAR; structural genomics, RRM domain, TIA-1 related protein, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1 Length = 109

 Score = 41.9 bits (99), Expect = 1e-05
 Identities = 16/69 (23%), Positives = 29/69 (42%), Gaps = 5/69 (7%)

Query: 12 GLSPNATEKDIHEFFSHCGDPVHVEIIRSGECGGTAYVTFSNAYALETA-VLLSGATIVD 70
          G++   T++ + + FS  G  + + +          +V FS   +   A V ++G TI  
Sbjct: 32 GIASGLTDQLMRQTFSPFGQIMEIRVFPEKGYS---FVRFSTHESAAHAIVSVNGTTIEG 88

Query: 71 QPVCIIRWG 79
            V    WG
Sbjct: 89 HVV-KCYWG 96

>4f02_A Polyadenylate-binding protein 1; mRNA, eukaryotic initiation factors PAIP1 and PAIP2, translation-RNA complex; 2.00A {Homo sapiens} PDB: 1cvj_A* Length = 213

 Score = 43.4 bits (103), Expect = 2e-05
 Identities = 22/71 (30%), Positives = 33/71 (46%), Gaps = 11/71 (15%)

Query: 11 VG-LSPNATEKDIHEFFSHCGDPVHVEIIR---SGECGGTAYVTFSN----AYALETAVL 62
          VG L P+ TE  ++E FS  G  + + + R   +    G AYV F        AL+T   
Sbjct: 20 VGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQPADAERALDT--- 76

Query: 63 LSGATIVDQPV 73
          ++   I  +PV
Sbjct: 77 MNFDVIKGKPV 87

>1x4a_A Splicing factor, arginine/serine-rich 1 (splicing factor 2, alternate splicing factor)...; structure genomics, SURP domain, splicing factor SF2; NMR {Homo sapiens} SCOP: d.58.7.1 Length = 109

 Score = 41.5 bits (98), Expect = 2e-05
 Identities = 14/52 (26%), Positives = 21/52 (40%)

Query: 10 VVGLSPNATEKDIHEFFSHCGDPVHVEIIRSGECGGTAYVTFSNAYALETAV 61
          V  L P+   KDI + F   G    +++         A+V F +    E AV
Sbjct: 27 VGNLPPDIRTKDIEDVFYKYGAIRDIDLKNRRGGPPFAFVEFEDPRDAEDAV 78

>2kxn_B Transformer-2 protein homolog beta; SR protein, RRM, splicing factor, RNA protein complex, SMN, binding protein-RNA complex; NMR {Homo sapiens} PDB: 2rra_A 2rrb_A Length = 129

 Score = 42.0 bits (99), Expect = 2e-05
 Identities = 20/55 (36%), Positives = 25/55 (45%), Gaps = 3/55 (5%)

Query: 10  VVGLSPNATEKDIHEFFSHCGDPVHVEIIR---SGECGGTAYVTFSNAYALETAV 61
           V GLS   TE+D+ E FS  G    V I+    S    G A+V F N    + A 
Sbjct: 51  VFGLSLYTTERDLREVFSKYGPIADVSIVYDQQSRRSRGFAFVYFENVDDAKEAK 105

>2cq0_A Eukaryotic translation initiation factor 3 subunit 4; RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1 Length = 103

 Score = 41.4 bits (98), Expect = 2e-05
 Identities = 12/48 (25%), Positives = 22/48 (45%), Gaps = 3/48 (6%)

Query: 10 VVGLSPNATEKDIHEFFSHCGDPVHVEIIR---SGECGGTAYVTFSNA 54
          V  LS +  E D+ E F   G    + + +   +G+  G A+++F   
Sbjct: 20 VTNLSEDTRETDLQELFRPFGSISRIYLAKDKTTGQSKGFAFISFHRR 67

>2hvz_A Splicing factor, arginine/serine-rich 7; RRM, RNA binding protein; NMR {Homo sapiens} Length = 101

 Score = 41.1 bits (97), Expect = 2e-05
 Identities = 16/52 (30%), Positives = 23/52 (44%), Gaps = 2/52 (3%)

Query: 10 VVGLSPNATEKDIHEFFSHCGDPVHVEIIRSGECGGTAYVTFSNAYALETAV 61
          V  L   A + ++   FS+ G    V I R+    G A+V F +    E AV
Sbjct: 5  VGNLGTGAGKGELERAFSYYGPLRTVWIARNP--PGFAFVEFEDPRDAEDAV 54

>1why_A Hypothetical protein riken cDNA 1810017N16; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1 Length = 97

 Score = 41.1 bits (97), Expect = 2e-05
 Identities = 10/50 (20%), Positives = 20/50 (40%), Gaps = 3/50 (6%)

Query: 12 GLSPNATEKDIHEFFSHCGDPVHVEIIRSGECGGTAYVTFSNAYALETAV 61
          GL PN +   +   F   G    ++ ++       AY+ + +  A + A 
Sbjct: 24 GLGPNTSLAALAREFDRFGSIRTIDHVKGDSF---AYIQYESLDAAQAAC 70

>2dgp_A Bruno-like 4, RNA binding protein; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2dgq_A Length = 106

 Score = 41.2 bits (97), Expect = 2e-05
 Identities = 11/55 (20%), Positives = 22/55 (40%), Gaps = 3/55 (5%)

Query: 10 VVGLSPNATEKDIHEFFSHCGDPVHVEIIRSGECG---GTAYVTFSNAYALETAV 61
          +  +  N  EKD+   F   G    + +++    G   G A++T+    +   A 
Sbjct: 18 IGQIPRNLDEKDLKPLFEEFGKIYELTVLKDRFTGMHKGCAFLTYCERESALKAQ 72

>2e5g_A U6 snRNA-specific terminal uridylyltransferase 1; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 94

 Score = 40.8 bits (96), Expect = 2e-05
 Identities = 12/59 (20%), Positives = 21/59 (35%), Gaps = 2/59 (3%)

Query: 10 VVGLSPNATEKDIHEFFSHCGDPVHVEIIRSGECGGTAYVTFSNAYALETAVLLSGATI 68
          V G         + E+F   G    V + +  + G  A V   +  A E  +  S  ++
Sbjct: 13 VSGFPRGVDSAQLSEYFLAFGPVASVVMDK--DKGVFAIVEMGDVGAREAVLSQSQHSL 69

>2dis_A Unnamed protein product; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1 Length = 109

 Score = 41.3 bits (97), Expect = 3e-05
 Identities = 15/87 (17%), Positives = 31/87 (35%), Gaps = 7/87 (8%)

Query: 12  GLSPNATEKDIHEFFSHCGDPV-HVEIIRS----GECGGTAYVTFSNAYALETAV--LLS 64
           G+      ++I E  +   + V  V +  S     +  G A+V + +  A   A   L+ 
Sbjct: 15  GIPKMKKREEILEEIAKVTEGVLDVIVYASAADKMKNRGFAFVEYESHRAAAMARRKLMP 74

Query: 65  GATIVDQPVCIIRWGEYTDEPNPWISS 91
           G   +      + W E   + +  +  
Sbjct: 75  GRIQLWGHQIAVDWAEPEIDVDEDVME 101

>1p27_B RNA-binding protein 8A; nuclear protein, mRNA splicing; 2.00A {Homo sapiens} SCOP: d.58.7.1 Length = 106

 Score = 41.1 bits (97), Expect = 3e-05
 Identities = 18/68 (26%), Positives = 33/68 (48%), Gaps = 4/68 (5%)

Query: 10 VVGLSPNATEKDIHEFFSHCGDPVHVEIIRSGECG---GTAYVTFSNAYALETAV-LLSG 65
          V G+   ATE+DIH+ F+  G+  ++ +      G   G   V +      + A+  L+G
Sbjct: 28 VTGVHEEATEEDIHDKFAEYGEIKNIHLNLDRRTGYLKGYTLVEYETYKEAQAAMEGLNG 87

Query: 66 ATIVDQPV 73
            ++ QP+
Sbjct: 88 QDLMGQPI 95

>2kt5_A RNA and export factor-binding protein 2; chaperone, mRNA processing, mRNA splicing, transport, nucleus, RNA-binding, spliceosome, transport; NMR {Mus musculus} Length = 124

 Score = 41.6 bits (98), Expect = 3e-05
 Identities = 16/54 (29%), Positives = 21/54 (38%), Gaps = 2/54 (3%)

Query: 10 VVGLSPNATEKDIHEFFSHCGDPVHVEII--RSGECGGTAYVTFSNAYALETAV 61
          V  L    ++ DI E F+  G      +   RSG   GTA V F        A+
Sbjct: 40 VSNLDFGVSDADIQELFAEFGTLKKAAVDYDRSGRSLGTADVHFERRADALKAM 93

>2dgs_A DAZ-associated protein 1; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 99

 Score = 40.6 bits (96), Expect = 3e-05
 Identities = 15/60 (25%), Positives = 27/60 (45%), Gaps = 3/60 (5%)

Query: 12 GLSPNATEKDIHEFFSHCGDPVHVEIIRSGECG---GTAYVTFSNAYALETAVLLSGATI 68
          G+  N  E ++ E+F   G    V +I   E     G  ++TF +  +++ AV +    I
Sbjct: 17 GIPHNCGETELREYFKKFGVVTEVVMIYDAEKQRPRGFGFITFEDEQSVDQAVNMHFHDI 76

>1oo0_B CG8781-PA, drosophila Y14; RNA recognition motif, splicing, protein complex, EXON junct complex, signaling protein; 1.85A {Drosophila melanogaster} SCOP: d.58.7.1 PDB: 2hyi_B* 2j0s_D* 2xb2_D* Length = 110

 Score = 40.7 bits (96), Expect = 4e-05
 Identities = 18/68 (26%), Positives = 29/68 (42%), Gaps = 4/68 (5%)

Query: 10 VVGLSPNATEKDIHEFFSHCGDPVHVEII---RSGECGGTAYVTFSNAYALETAV-LLSG 65
          V  +   A E +I E F   G+  ++ +    R+G   G A V +        A   L+G
Sbjct: 31 VTSIHEEAQEDEIQEKFCDYGEIKNIHLNLDRRTGFSKGYALVEYETHKQALAAKEALNG 90

Query: 66 ATIVDQPV 73
          A I+ Q +
Sbjct: 91 AEIMGQTI 98

>2lea_A Serine/arginine-rich splicing factor 2; SR protein, RNA binding protein; NMR {Homo sapiens} PDB: 2leb_A 2lec_A Length = 135

 Score = 41.3 bits (97), Expect = 4e-05
 Identities = 14/55 (25%), Positives = 21/55 (38%), Gaps = 3/55 (5%)

Query: 10  VVGLSPNATEKDIHEFFSHCGDPVHVEIIR---SGECGGTAYVTFSNAYALETAV 61
           V  L+   +   +   F   G    V I R   + E  G A+V F +    E A+
Sbjct: 52  VDNLTYRTSPDTLRRVFEKYGRVGDVYIPRDRYTKESRGFAFVRFHDKRDAEDAM 106

>2x1f_A MRNA 3'-END-processing protein RNA15; transcription-RNA complex, mRNA processing; 1.60A {Saccharomyces cerevisiae} PDB: 2x1b_A 2x1a_A 2km8_B Length = 96

 Score = 40.3 bits (95), Expect = 5e-05
 Identities = 11/53 (20%), Positives = 28/53 (52%), Gaps = 3/53 (5%)

Query: 12 GLSPNATEKDIHEFFSHCGDPVHVEIIRSGECG---GTAYVTFSNAYALETAV 61
           +  + TE+ I +  S+ G  ++++++   + G   G A++ F +  +  +AV
Sbjct: 9  SIPYDQTEEQILDLCSNVGPVINLKMMFDPQTGRSKGYAFIEFRDLESSASAV 61

>3ulh_A THO complex subunit 4; nuclear protein, RNA binding, structural genomi center for structural genomics, JCSG, protein structure INI PSI-biology; 2.54A {Homo sapiens} PDB: 1no8_A Length = 107

 Score = 40.3 bits (95), Expect = 5e-05
 Identities = 16/54 (29%), Positives = 21/54 (38%), Gaps = 2/54 (3%)

Query: 10 VVGLSPNATEKDIHEFFSHCGDPVHVEII--RSGECGGTAYVTFSNAYALETAV 61
          V  L    ++ DI E F+  G      +   RSG   GTA V F        A+
Sbjct: 34 VSNLDFGVSDADIQELFAEFGTLKKAAVHYDRSGRSLGTADVHFERKADALKAM 87

>1x4h_A RNA-binding protein 28; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1 Length = 111

 Score = 40.4 bits (95), Expect = 5e-05
 Identities = 11/55 (20%), Positives = 23/55 (41%), Gaps = 3/55 (5%)

Query: 10 VVGLSPNATEKDIHEFFSHCGDPVHVEIIRSGECG---GTAYVTFSNAYALETAV 61
          +  LS ++ E+ + E     GD  +V ++   +     G A+  F    A +  +
Sbjct: 20 IRNLSFDSEEEALGEVLQQFGDLKYVRVVLHPDTEHSKGCAFAQFMTQEAAQKCL 74

>1iqt_A AUF1, heterogeneous nuclear ribonucleoprotein D0; RNA-binding protein, hnRNP, telomere, DNA-binding protein, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 1wtb_A 1x0f_A Length = 75

 Score = 39.4 bits (93), Expect = 5e-05
 Identities = 13/60 (21%), Positives = 27/60 (45%), Gaps = 3/60 (5%)

Query: 12 GLSPNATEKDIHEFFSHCGDPVHVEIIR---SGECGGTAYVTFSNAYALETAVLLSGATI 68
          GLSP+  E+ I E+F   G+   +E+     + +  G  ++TF     ++  +      +
Sbjct: 6  GLSPDTPEEKIREYFGGFGEVESIELPMDNKTNKRRGFCFITFKEEEPVKKIMEKKYHNV 65

>3smz_A Protein raver-1, ribonucleoprotein PTB-binding 1; RNA binding, RNA recognition motif, vincu alpha-actinin, nucleus, RNA binding protein; 1.99A {Homo sapiens} PDB: 3h2u_B 3h2v_E Length = 284

 Score = 41.9 bits (99), Expect = 7e-05
 Identities = 13/63 (20%), Positives = 28/63 (44%), Gaps = 5/63 (7%)

Query: 12 GLSPNATEKDIHEFFSHCGDPVHVEIIRSGECGGTAYVTFSNAYALETAV-LLSGATIVD 70
          GL  + T +++H+  S      +  + +     GTA+VT  N    E A+     + + +
Sbjct: 29 GLPGDVTNQEVHDLLSDYE-LKYCFVDKY---KGTAFVTLLNGEQAEAAINAFHQSRLRE 84

Query: 71 QPV 73
          + +
Sbjct: 85 REL 87

>3smz_A Protein raver-1, ribonucleoprotein PTB-binding 1; RNA binding, RNA recognition motif, vincu alpha-actinin, nucleus, RNA binding protein; 1.99A {Homo sapiens} PDB: 3h2u_B 3h2v_E Length = 284

 Score = 39.6 bits (93), Expect = 5e-04
 Identities = 10/55 (18%), Positives = 18/55 (32%), Gaps = 4/55 (7%)

Query: 11  VG-LSPNATEKDIHEFFSHCGDPVHVEIIRSGECG---GTAYVTFSNAYALETAV 61
           V  L P+ T++   E     G      ++ S   G   G  +  +    +   A 
Sbjct: 100 VANLPPSLTQQQFEELVRPFGSLERCFLVYSERTGQSKGYGFAEYMKKDSAARAK 154

>2kn4_A Immunoglobulin G-binding protein G, splicing FACT arginine/serine-rich 2, S35, splicing factor SC35,; RRM domain, cell WALL; NMR {Streptococcus SP} Length = 158

 Score = 41.0 bits (96), Expect = 7e-05
 Identities = 14/55 (25%), Positives = 21/55 (38%), Gaps = 3/55 (5%)

Query: 10  VVGLSPNATEKDIHEFFSHCGDPVHVEIIR---SGECGGTAYVTFSNAYALETAV 61
           V  L+   +   +   F   G    V I R   + E  G A+V F +    E A+
Sbjct: 75  VDNLTYRTSPDTLRRVFEKYGRVGDVYIPRDRYTKESRGFAFVRFHDKRDAEDAM 129

>2cqh_A IGF-II mRNA-binding protein 2 isoform A; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1 Length = 93

 Score = 39.5 bits (93), Expect = 8e-05
 Identities = 12/52 (23%), Positives = 23/52 (44%), Gaps = 4/52 (7%)

Query: 11 VG-LSPNATEKDIHEFFSHCGDPVHVEIIRSGECGGTAYVTFSNAYALETAV 61
          +G LSP  T  D+ + F     P+  +++      G A+V + +      A+
Sbjct: 13 IGNLSPAVTADDLRQLFGDRKLPLAGQVLLK---SGYAFVDYPDQNWAIRAI 61

>2dnm_A SRP46 splicing factor; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 103

 Score = 39.5 bits (93), Expect = 9e-05
 Identities = 12/55 (21%), Positives = 19/55 (34%), Gaps = 3/55 (5%)

Query: 10 VVGLSPNATEKDIHEFFSHCGDPVHVEIIR---SGECGGTAYVTFSNAYALETAV 61
          V  L+   +   +   F   G    V I R   +    G A+V F +    + A 
Sbjct: 18 VDNLTYRTSPDSLRRVFEKYGRVGDVYIPREPHTKAPRGFAFVRFHDRRDAQDAE 72

>3r27_A HnRNP L, heterogeneous nuclear ribonucleoprotein L; RBD fold, protein binding, nucleus; 2.04A {Homo sapiens} Length = 100

 Score = 39.4 bits (92), Expect = 1e-04
 Identities = 14/67 (20%), Positives = 21/67 (31%), Gaps = 6/67 (8%)

Query: 12 GLSPNATEKDIHEFFSHCGDPVHVEIIRSGECGGTAYVTFSNAYALETAV---LLSGATI 68
          GL     E D+ E     G   +V ++        A V F +      AV     +   I
Sbjct: 28 GLIDGVVEADLVEALQEFGPISYVVVMPK---KRQALVEFEDVLGACNAVNYAADNQIYI 84

Query: 69 VDQPVCI 75
             P  +
Sbjct: 85 AGHPAFV 91

>1x5u_A Splicing factor 3B subunit 4 (spliceosome associated protein 49) (SAP 49) (SF3B50)...; structure genomics,RRM domain,splicing factor 3B; NMR {Homo sapiens} SCOP: d.58.7.1 Length = 105

 Score = 39.2 bits (92), Expect = 1e-04
 Identities = 13/55 (23%), Positives = 22/55 (40%), Gaps = 3/55 (5%)

Query: 10 VVGLSPNATEKDIHEFFSHCGDPVHVEIIRSGECG---GTAYVTFSNAYALETAV 61
          V GL    +E  + E F   G  V+  + +    G   G  +V F +    + A+
Sbjct: 20 VGGLDEKVSEPLLWELFLQAGPVVNTHMPKDRVTGQHQGYGFVEFLSEEDADYAI 74

>2cqc_A Arginine/serine-rich splicing factor 10; RNA recognition motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1 Length = 95

 Score = 39.1 bits (92), Expect = 1e-04
 Identities = 20/55 (36%), Positives = 25/55 (45%), Gaps = 3/55 (5%)

Query: 10 VVGLSPNATEKDIHEFFSHCGDPVHVEIIR---SGECGGTAYVTFSNAYALETAV 61
          V GLS   TE+D+ E FS  G    V I+    S    G A+V F N    + A 
Sbjct: 20 VFGLSLYTTERDLREVFSKYGPIADVSIVYDQQSRRSRGFAFVYFENVDDAKEAK 74

>2jvo_A Nucleolar protein 3; nucleus, phosphorylation, ribonucleoprotein, ribosome biogenesis, RNA-binding, rRNA processing; NMR {Saccharomyces cerevisiae} PDB: 2osq_A Length = 108

 Score = 39.2 bits (92), Expect = 1e-04
 Identities = 16/65 (24%), Positives = 29/65 (44%), Gaps = 6/65 (9%)

Query: 10 VVGLSPNATEKDIHEFFSHCGDPVHVEIIRSGECGGTAYVTFSNAYALETAVL-LSGATI 68
          V     +  E +++E F   G    V+I+      G A+V F  A +   A+  + G + 
Sbjct: 36 VRPFPLDVQESELNEIFGPFGPMKEVKILN-----GFAFVEFEEAESAAKAIEEVHGKSF 90

Query: 69 VDQPV 73
           +QP+
Sbjct: 91 ANQPL 95

>2e5h_A Zinc finger CCHC-type and RNA-binding motif- containing protein 1; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 94

 Score = 38.7 bits (91), Expect = 1e-04
 Identities = 13/55 (23%), Positives = 25/55 (45%), Gaps = 3/55 (5%)

Query: 10 VVGLSPNATEKDIHEFFSHCGDPVHVEIIR---SGECGGTAYVTFSNAYALETAV 61
          V  L  + T  D++  FS  G  V V I++   + +  G A++ F +  + +   
Sbjct: 21 VSNLPFSLTNNDLYRIFSKYGKVVKVTIMKDKDTRKSKGVAFILFLDKDSAQNCT 75

>1whw_A Hypothetical protein riken cDNA 1200009A02; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1 Length = 99

 Score = 38.7 bits (91), Expect = 2e-04
 Identities = 14/55 (25%), Positives = 23/55 (41%), Gaps = 3/55 (5%)

Query: 10 VVGLSPNATEKDIHEFFSHCGDPVHVEII---RSGECGGTAYVTFSNAYALETAV 61
          V  LS  ++E+D+ + FS  G    +       + +  G A+VTF        A 
Sbjct: 13 VRNLSYTSSEEDLEKLFSAYGPLSELHYPIDSLTKKPKGFAFVTFMFPEHAVKAY 67

>2ku7_A MLL1 PHD3-CYP33 RRM chimeric protein; transcriptional regulation, RRM domain, transcr; NMR {Homo sapiens} Length = 140

 Score = 39.8 bits (93), Expect = 2e-04
 Identities = 14/53 (26%), Positives = 23/53 (43%), Gaps = 3/53 (5%)

Query: 12  GLSPNATEKDIHEFFSHCGDPVHVEIIR---SGECGGTAYVTFSNAYALETAV 61
           GL+    +K +H  F   GD   ++I     + +  G A+V F  A     A+
Sbjct: 70  GLAEEVDDKVLHAAFIPFGDITDIQIPLDYETEKHRGFAFVEFELAEDAAAAI 122

>3mdf_A Peptidyl-prolyl CIS-trans isomerase E; RRM domain, PHD finger, CYP33, MLL, RNA binding protein, ALT splicing, mRNA processing, mRNA splicing; 1.85A {Homo sapiens} PDB: 2kyx_A 3lpy_A* Length = 85

 Score = 38.3 bits (90), Expect = 2e-04
 Identities = 15/53 (28%), Positives = 22/53 (41%), Gaps = 3/53 (5%)

Query: 12 GLSPNATEKDIHEFFSHCGDPVHVEIIRSGECG---GTAYVTFSNAYALETAV 61
          GL+    +K +H  F   GD   ++I    E     G A+V F  A     A+
Sbjct: 14 GLAEEVDDKVLHAAFIPFGDITDIQIPLDYETEKHRGFAFVEFELAEDAAAAI 66

>2dnh_A Bruno-like 5, RNA binding protein; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2dnk_A 2dno_A Length = 105

 Score = 38.8 bits (91), Expect = 2e-04
 Identities = 14/54 (25%), Positives = 24/54 (44%), Gaps = 2/54 (3%)

Query: 10 VVGLSPNATEKDIHEFFSHCGDPVHVEIIR--SGECGGTAYVTFSNAYALETAV 61
          V  L+   +E+D+   F   G      ++R   G   G A+V FS+    + A+
Sbjct: 20 VGMLNKQQSEEDVLRLFQPFGVIDECTVLRGPDGSSKGCAFVKFSSHTEAQAAI 73

>2mss_A Protein (musashi1); RNA-binding domain, RNA binding protein; NMR {Mus musculus} SCOP: d.58.7.1 PDB: 2mst_A Length = 75

 Score = 37.8 bits (89), Expect = 2e-04
 Identities = 14/60 (23%), Positives = 23/60 (38%), Gaps = 3/60 (5%)

Query: 12 GLSPNATEKDIHEFFSHCGDPVHVEIIRSGECG---GTAYVTFSNAYALETAVLLSGATI 68
          GLS N T +D+  +F   G      ++         G  +VTF +   +E    +    I
Sbjct: 6  GLSVNTTVEDVKHYFEQFGKVDDAMLMFDKTTNRHRGFGFVTFESEDIVEKVCEIHFHEI 65

>2cpj_A Non-POU domain-containing octamer-binding protein; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1 Length = 99

 Score = 38.4 bits (90), Expect = 2e-04
 Identities = 12/52 (23%), Positives = 20/52 (38%), Gaps = 3/52 (5%)

Query: 10 VVGLSPNATEKDIHEFFSHCGDPVHVEIIRSGECGGTAYVTFSNAYALETAV 61
          V  L P+ TE+++ + F   G    V I +    G   ++        E A 
Sbjct: 20 VGNLPPDITEEEMRKLFEKYGKAGEVFIHKDKGFG---FIRLETRTLAEIAK 68

>1fjc_A Nucleolin RBD2, protein C23; RNP, RRM, RNA binding domain, nucleolus, structural protein; NMR {Mesocricetus auratus} SCOP: d.58.7.1 Length = 96

 Score = 38.4 bits (90), Expect = 2e-04
 Identities = 16/61 (26%), Positives = 26/61 (42%), Gaps = 5/61 (8%)

Query: 10 VVGLSPNATEKDIHEFFSHCGDPVHVEIIR-SGECGGTAYVTFSNAYALETAVL-LSGAT 67
             LS N TE ++ E F    +   + ++   G+  G AY+ F +    E  +    GA 
Sbjct: 21 AKNLSFNITEDELKEVFEDALE---IRLVSQDGKSKGIAYIEFKSEADAEKNLEEKQGAE 77

Query: 68 I 68
          I
Sbjct: 78 I 78

>2adc_A Polypyrimidine tract-binding protein 1; RBD, RRM, protein-RNA complex, RNA binding protein/RNA complex; NMR {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 2evz_A Length = 229

 Score = 40.4 bits (94), Expect = 2e-04
 Identities = 18/101 (17%), Positives = 38/101 (37%), Gaps = 5/101 (4%)

Query: 10  VVGLSP-NATEKDIHEFFSHCGDPVHVEIIRSGECGGTAYVTFSNAYALETAVL-LSGAT 67
           V  L+P   T + +   F   GD   V+I+ +      A V  ++    + A+  L+G  
Sbjct: 39  VSNLNPERVTPQSLFILFGVYGDVQRVKILFN--KKENALVQMADGNQAQLAMSHLNGHK 96

Query: 68  IVDQPVCIIRWGEYTDEPNPWISSWGFDENSGSTTTHVGQF 108
           +  +P+  I   ++ +   P               + + +F
Sbjct: 97  LHGKPIR-ITLSKHQNVQLPREGQEDQGLTKDYGNSPLHRF 136

>3nmr_A Cugbp ELAV-like family member 1; RRM, PRE-mRNA splicing, RNA binding protein-RNA complex; 1.85A {Homo sapiens} PDB: 3nna_A 3nnc_A 2dhs_A 3nnh_A Length = 175

 Score = 39.9 bits (94), Expect = 2e-04
 Identities = 14/57 (24%), Positives = 22/57 (38%), Gaps = 5/57 (8%)

Query: 10 VVGLSPNATEKDIHEFFSHCGDPVHVEIIR-----SGECGGTAYVTFSNAYALETAV 61
          V  +    +EKD+ E F   G    + ++R       +  G  +VTF    A   A 
Sbjct: 8  VGQVPRTWSEKDLRELFEQYGAVYEINVLRDRSQNPPQSKGCCFVTFYTRKAALEAQ 64

>1wf0_A TDP-43, TAR DNA-binding protein-43; structural genomics, RRM domain, riken structural genomics/proteomics initiative RSGI, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 Length = 88

 Score = 38.0 bits (89), Expect = 2e-04
 Identities = 14/50 (28%), Positives = 25/50 (50%), Gaps = 2/50 (4%)

Query: 12 GLSPNATEKDIHEFFSHCGDPVHVEIIRSGECGGTAYVTFSNAYALETAV 61
            + + TE ++ EFFS  GD + V I +       A+VTF++    ++  
Sbjct: 12 RCTGDMTEDELREFFSQYGDVMDVFIPK--PFRAFAFVTFADDQIAQSLC 59

>2la6_A RNA-binding protein FUS; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, RNA recognition; NMR {Homo sapiens} Length = 99

 Score = 38.4 bits (90), Expect = 2e-04
 Identities = 13/63 (20%), Positives = 26/63 (41%), Gaps = 11/63 (17%)

Query: 10 VVGLSPNATEKDIHEFFSHCGD--------PVHVEIIR---SGECGGTAYVTFSNAYALE 58
          V GL  N T + + ++F   G            + +     +G+  G A V+F +  + +
Sbjct: 18 VQGLGENVTIESVADYFKQIGIIKTNKKTGQPMINLYTDRETGKLKGEATVSFDDPPSAK 77

Query: 59 TAV 61
           A+
Sbjct: 78 AAI 80

>3d2w_A TAR DNA-binding protein 43; DP-43 proteinopathy, TDP-43 inclusions, RNA recognition MOTI U, ALS, RRM; HET: DNA; 1.65A {Mus musculus} Length = 89

 Score = 38.0 bits (89), Expect = 3e-04
 Identities = 11/50 (22%), Positives = 24/50 (48%), Gaps = 2/50 (4%)

Query: 12 GLSPNATEKDIHEFFSHCGDPVHVEIIRSGECGGTAYVTFSNAYALETAV 61
            + + T +++ +FF   G+ V V I +       A+VTF++    ++  
Sbjct: 18 RCTEDMTAEELQQFFCQYGEVVDVFIPK--PFRAFAFVTFADDKVAQSLC 65

>2i2y_A Fusion protein consists of immunoglobin G- binding protein G and splicing factor,...; protein-RNA complex RRM alpha-beta sandwich BETA1-alpha1- BETA2-BETA3-alpha2-BETA4; NMR {Streptococcus SP} PDB: 2i38_A Length = 150

 Score = 39.1 bits (91), Expect = 3e-04
 Identities = 13/52 (25%), Positives = 21/52 (40%), Gaps = 2/52 (3%)

Query: 10  VVGLSPNATEKDIHEFFSHCGDPVHVEIIRSGECGGTAYVTFSNAYALETAV 61
           V  L  N  + ++   F + G    V + R+    G A+V F +      AV
Sbjct: 78  VGNLGNNGNKTELERAFGYYGPLRSVWVARNPP--GFAFVEFEDPRDAADAV 127

>2a3j_A U1 small nuclear ribonucleoprotein A; computationally designed protein, RRM, U1A, RNA binding protein; NMR {Homo sapiens} Length = 127

 Score = 38.7 bits (90), Expect = 3e-04
 Identities = 13/71 (18%), Positives = 29/71 (40%), Gaps = 5/71 (7%)

Query: 10  VVGLSPNATEKD----IHEFFSHCGDPVHVEIIRSGECGGTAYVTFSNAYALETAV-LLS 64
           +  ++P   ++     ++   S  GD + + +  S +  G AY+ F+   + +  V    
Sbjct: 34  ITNINPEVPKEKLQALLYALASSQGDILDIVVDLSDDNSGKAYIVFATQESAQAFVEAFQ 93

Query: 65  GATIVDQPVCI 75
           G      P+ I
Sbjct: 94  GYPFQGNPLVI 104

>1sjq_A Polypyrimidine tract-binding protein 1; babbab motif, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 Length = 105

 Score = 38.3 bits (89), Expect = 3e-04
 Identities = 9/66 (13%), Positives = 21/66 (31%)

Query: 10 VVGLSPNATEKDIHEFFSHCGDPVHVEIIRSGECGGTAYVTFSNAYALETAVLLSGATIV 69
          +  L  + TE ++       G   ++ +++          T   A  +          + 
Sbjct: 21 IRKLPIDVTEGEVISLGLPFGKVTNLLMLKGKNQAFIEMNTEEAANTMVNYYTSVTPVLR 80

Query: 70 DQPVCI 75
           QP+ I
Sbjct: 81 GQPIYI 86

>2lkz_A RNA-binding protein 5; RRM; NMR {Homo sapiens} Length = 95

 Score = 38.1 bits (89), Expect = 3e-04
 Identities = 9/57 (15%), Positives = 22/57 (38%), Gaps = 5/57 (8%)

Query: 10 VVGLSPNATEKDIHEFFSHCG--DPVHVEIIR---SGECGGTAYVTFSNAYALETAV 61
          +  ++P+     I    S        ++ +I+   + +  G A+V  S+A      +
Sbjct: 14 LRNIAPHTVVDSIMTALSPYASLAVNNIRLIKDKQTQQNRGFAFVQLSSAMDASQLL 70

>2lcw_A RNA-binding protein FUS; RRM, nucleic acid binding protein; NMR {Homo sapiens} Length = 116

 Score = 38.5 bits (90), Expect = 3e-04
 Identities = 13/63 (20%), Positives = 26/63 (41%), Gaps = 11/63 (17%)

Query: 10 VVGLSPNATEKDIHEFFSHCGD--------PVHVEIIR---SGECGGTAYVTFSNAYALE 58
          V GL  N T + + ++F   G            + +     +G+  G A V+F +  + +
Sbjct: 12 VQGLGENVTIESVADYFKQIGIIKTNKKTGQPMINLYTDRETGKLKGEATVSFDDPPSAK 71

Query: 59 TAV 61
           A+
Sbjct: 72 AAI 74

>1x5s_A Cold-inducible RNA-binding protein; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1 Length = 102

 Score = 38.0 bits (89), Expect = 3e-04
 Identities = 16/55 (29%), Positives = 26/55 (47%), Gaps = 3/55 (5%)

Query: 10 VVGLSPNATEKDIHEFFSHCGDPVHVEIIRSGECG---GTAYVTFSNAYALETAV 61
          V GLS +  E+ + + FS  G    V +++  E     G  +VTF N    + A+
Sbjct: 17 VGGLSFDTNEQSLEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAKDAM 71

>3sde_A Paraspeckle component 1; RRM, anti parallel right handed coiled-coil, NOPS, DBHS, RNA protein, RNA binding; 1.90A {Homo sapiens} PDB: 3sde_B Length = 261

 Score = 40.1 bits (94), Expect = 3e-04
 Identities = 18/68 (26%), Positives = 27/68 (39%), Gaps = 5/68 (7%)

Query: 12 GLSPNATEKDIHEFFSHCGDPVHVEIIRSGECGGTAYVTFSNAYALETAV-LLSGATIVD 70
           L  + TE+D    F   G+P  V I R     G  ++   +    E A   L G  +  
Sbjct: 29 NLPTDITEEDFKRLFERYGEPSEVFINRD---RGFGFIRLESRTLAEIAKAELDGTILKS 85

Query: 71 QPVCIIRW 78
          +P   IR+
Sbjct: 86 RP-LRIRF 92

>2dnl_A Cytoplasmic polyadenylation element binding protein 3; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 114

 Score = 38.4 bits (89), Expect = 3e-04
 Identities = 21/98 (21%), Positives = 36/98 (36%), Gaps = 23/98 (23%)

Query: 12  GLSPNATEKDIHEFFSHCGDPVHVEIIRSGECGGT------AYVTFSNAYALETA----- 60
           GL P+  E +I   F   G P+ V+     E          A++ F    +++       
Sbjct: 15  GLPPDIDEDEITASFRRFG-PLVVDWPHKAESKSYFPPKGYAFLLFQEESSVQALIDACL 73

Query: 61  -------VLLSGATIVDQPVCIIRW----GEYTDEPNP 87
                  + +S  TI D+PV I  W     ++  +  P
Sbjct: 74  EEDGKLYLCVSSPTIKDKPVQIRPWNLSDSDFVMDSGP 111

>2do0_A HnRNP M, heterogeneous nuclear ribonucleoprotein M; RNA recognition motif, RRM, RNA binding domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 114

 Score = 38.1 bits (89), Expect = 4e-04
 Identities = 15/54 (27%), Positives = 22/54 (40%), Gaps = 2/54 (3%)

Query: 10 VVGLSPNATEKDIHEFFSHCGDPVHVEII--RSGECGGTAYVTFSNAYALETAV 61
          V  L      K + E FS  G  V  +I+  + G+  G   VTF  +     A+
Sbjct: 20 VANLDYKVGWKKLKEVFSMAGVVVRADILEDKDGKSRGIGTVTFEQSIEAVQAI 73

>2cpe_A RNA-binding protein EWS; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1 Length = 113

 Score = 38.2 bits (89), Expect = 4e-04
 Identities = 17/63 (26%), Positives = 26/63 (41%), Gaps = 11/63 (17%)

Query: 10 VVGLSPNATEKDIHEFFSHCG--------DPVHVEIIRSGECG---GTAYVTFSNAYALE 58
          V GL+ + T  D+ +FF  CG            + I    E G   G A V++ +    +
Sbjct: 20 VQGLNDSVTLDDLADFFKQCGVVKMNKRTGQPMIHIYLDKETGKPKGDATVSYEDPPTAK 79

Query: 59 TAV 61
           AV
Sbjct: 80 AAV 82

>2dnq_A RNA-binding protein 4B; RRM domain,RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 90

 Score = 37.6 bits (88), Expect = 4e-04
 Identities = 14/52 (26%), Positives = 23/52 (44%), Gaps = 6/52 (11%)

Query: 11 VG-LSPNATEKDIHEFFSHCGDPVHVEIIRSGECGGTAYVTFSNAYALETAV 61
          +G L   ATE++I   F   G  +  +II+        +V   +  A E A+
Sbjct: 13 IGNLPREATEQEIRSLFEQYGKVLECDIIK-----NYGFVHIEDKTAAEDAI 59

>2dgu_A Heterogeneous nuclear ribonucleoprotein Q; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2dk2_A Length = 103

 Score = 37.6 bits (88), Expect = 4e-04
 Identities = 12/65 (18%), Positives = 27/65 (41%), Gaps = 6/65 (9%)

Query: 10 VVGLSPNATEKDIHEFFSHCGDPVHVEIIRSGECGGTAYVTFSNAYALETAV-LLSGATI 68
          V  L+   TE+ + + FS  G    V+ ++       A++ F        A+  ++G  +
Sbjct: 16 VRNLANTVTEEILEKAFSQFGKLERVKKLK-----DYAFIHFDERDGAVKAMEEMNGKDL 70

Query: 69 VDQPV 73
            + +
Sbjct: 71 EGENI 75

>2cph_A RNA binding motif protein 19; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1 Length = 107

 Score = 37.7 bits (88), Expect = 5e-04
 Identities = 13/56 (23%), Positives = 23/56 (41%), Gaps = 4/56 (7%)

Query: 10 VVGLSPNATEKDIHEFFSHCGDPVHVEIIR----SGECGGTAYVTFSNAYALETAV 61
          V  +   A +++I E FS  G+   V + +    +G   G  +V F      + A 
Sbjct: 20 VRNIPFQANQREIRELFSTFGELKTVRLPKKMTGTGAHRGFGFVDFITKQDAKKAF 75

>1x4e_A RNA binding motif, single-stranded interacting protein 2; structural genomics, RRM domain, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1 Length = 85

 Score = 37.1 bits (87), Expect = 5e-04
 Identities = 15/55 (27%), Positives = 26/55 (47%), Gaps = 3/55 (5%)

Query: 10 VVGLSPNATEKDIHEFFSHCGDPVHVEIIR---SGECGGTAYVTFSNAYALETAV 61
          + GL P  T++D+ +     G  V  + I    + +C G  +V F +  A + AV
Sbjct: 10 IRGLQPGTTDQDLVKLCQPYGKIVSTKAILDKTTNKCKGYGFVDFDSPSAAQKAV 64

>3bs9_A Nucleolysin TIA-1 isoform P40; RNA recognition motif, RRM, RNA binding domain, RBD, RNA splicing, apoptosis, phosphoprotein, RNA-binding; 1.95A {Homo sapiens} Length = 87

 Score = 37.1 bits (87), Expect = 5e-04
 Identities = 16/55 (29%), Positives = 24/55 (43%), Gaps = 4/55 (7%)

Query: 11 VG-LSPNATEKDIHEFFSHCGDPVHVEIIRSGECG---GTAYVTFSNAYALETAV 61
          VG LSP  T   I   F+  G      +++    G   G  +V+F N +  E A+
Sbjct: 11 VGDLSPEITTAAIAAAFAPFGRISDARVVKDMATGKSKGYGFVSFFNKWDAENAI 65

>2cqb_A Peptidyl-prolyl CIS-trans isomerase E; RNA recognition motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1 Length = 102

 Score = 37.2 bits (87), Expect = 6e-04
 Identities = 15/53 (28%), Positives = 22/53 (41%), Gaps = 3/53 (5%)

Query: 12 GLSPNATEKDIHEFFSHCGDPVHVEIIRSGECG---GTAYVTFSNAYALETAV 61
          GL+    +K +H  F   GD   ++I    E     G A+V F  A     A+
Sbjct: 19 GLAEEVDDKVLHAAFIPFGDITDIQIPLDYETEKHRGFAFVEFELAEDAAAAI 71

>2dnz_A Probable RNA-binding protein 23; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 95

 Score = 37.1 bits (87), Expect = 7e-04
 Identities = 13/55 (23%), Positives = 25/55 (45%), Gaps = 3/55 (5%)

Query: 10 VVGLSPNATEKDIHEFFSHCGDPVHVEIIR---SGECGGTAYVTFSNAYALETAV 61
          V  L  N TE  +   F   G   ++ +++   +G   G  ++TFS++     A+
Sbjct: 10 VGSLHFNITEDMLRGIFEPFGKIDNIVLMKDSDTGRSKGYGFITFSDSECARRAL 64

>2ywk_A Putative RNA-binding protein 11; RRM-domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; 1.54A {Homo sapiens} Length = 95

 Score = 36.8 bits (86), Expect = 7e-04
 Identities = 17/67 (25%), Positives = 30/67 (44%), Gaps = 3/67 (4%)

Query: 10 VVGLSPNATEKDIHEFFSHCGDPVHVEII--RSGECGGTAYVTFSNAYALETAV-LLSGA 66
          V  L     E+ ++E F   G    V I   R G+     +V F +  ++  A+ LL+G 
Sbjct: 21 VGNLEARVREEILYELFLQAGPLTKVTICKDREGKPKSFGFVCFKHPESVSYAIALLNGI 80

Query: 67 TIVDQPV 73
           +  +P+
Sbjct: 81 RLYGRPI 87

>3s7r_A Heterogeneous nuclear ribonucleoprotein A/B; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG; 2.15A {Homo sapiens} PDB: 1hd0_A 1hd1_A Length = 87

 Score = 36.8 bits (86), Expect = 7e-04
 Identities = 14/53 (26%), Positives = 28/53 (52%), Gaps = 3/53 (5%)

Query: 12 GLSPNATEKDIHEFFSHCGDPVHVEIIRSGECG---GTAYVTFSNAYALETAV 61
          GLS + ++KD+ ++F+  G+ V   I      G   G  ++ F +A ++E  +
Sbjct: 18 GLSWDTSKKDLKDYFTKFGEVVDCTIKMDPNTGRSRGFGFILFKDAASVEKVL 70

>1whx_A Hypothetical protein riken cDNA 1200009A02; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1 Length = 111

 Score = 37.1 bits (86), Expect = 9e-04
 Identities = 15/65 (23%), Positives = 21/65 (32%), Gaps = 4/65 (6%)

Query: 10 VVGLSPNATEKDIHEFFSHCGDPVHVEIIRSGECGGTAYVTFSNAYALETAVL-LSGATI 68
             L       +I E FS  G    +  +   E G TA V F        A   L+ +  
Sbjct: 15 AKNLPAGTLAAEIQETFSRFGS---LGRVLLPEGGITAIVEFLEPLEARKAFRHLAYSKF 71

Query: 69 VDQPV 73
             P+
Sbjct: 72 HHVPL 76

>2dgo_A Cytotoxic granule-associated RNA binding protein 1; RRM domain, structural genomics, NPPSFA; NMR {Mus musculus} PDB: 2rne_A 2dh7_A Length = 115

 Score = 36.9 bits (86), Expect = 9e-04
 Identities = 17/55 (30%), Positives = 26/55 (47%), Gaps = 4/55 (7%)

Query: 11 VG-LSPNATEKDIHEFFSHCGDPVHVEIIRSGECG---GTAYVTFSNAYALETAV 61
          VG LSP  T +DI   F+  G      +++    G   G  +V+F N +  E A+
Sbjct: 20 VGDLSPEITTEDIKAAFAPFGRISDARVVKDMATGKSKGYGFVSFFNKWDAENAI 74

>2ad9_A Polypyrimidine tract-binding protein 1; RBD, RRM, protein-RNA complex, RNA binding protein/RNA complex; NMR {Homo sapiens} SCOP: d.58.7.1 Length = 119

 Score = 37.2 bits (86), Expect = 9e-04
 Identities = 9/64 (14%), Positives = 20/64 (31%)

Query: 12  GLSPNATEKDIHEFFSHCGDPVHVEIIRSGECGGTAYVTFSNAYALETAVLLSGATIVDQ 71
            L  + TE ++       G   ++ +++          T   A  +          +  Q
Sbjct: 38  KLPIDVTEGEVISLGLPFGKVTNLLMLKGKNQAFIEMNTEEAANTMVNYYTSVTPVLRGQ 97

Query: 72  PVCI 75
           P+ I
Sbjct: 98  PIYI 101

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	242
4fxv_A	99	ELAV-like protein 1; RNA recognition motif, putati	99.73
4f25_A	115	Polyadenylate-binding protein 1; RRM fold, transla	99.69
3mdf_A	85	Peptidyl-prolyl CIS-trans isomerase E; RRM domain,	99.68
4a8x_A	88	RNA-binding protein with serine-rich domain 1; tra	99.68
3ucg_A	89	Polyadenylate-binding protein 2; ferredoxin-like,	99.68
2dgs_A	99	DAZ-associated protein 1; RRM domain, structural g	99.67
2dgx_A	96	KIAA0430 protein; RRM domain, structural genomics,	99.67
1x5s_A	102	Cold-inducible RNA-binding protein; structure geno	99.67
3s7r_A	87	Heterogeneous nuclear ribonucleoprotein A/B; ferre	99.67
2dnz_A	95	Probable RNA-binding protein 23; RNA recognition m	99.67
1whw_A	99	Hypothetical protein riken cDNA 1200009A02; RNA re	99.67
2cqb_A	102	Peptidyl-prolyl CIS-trans isomerase E; RNA recogni	99.66
1x4a_A	109	Splicing factor, arginine/serine-rich 1 (splicing	99.66
1x5t_A	96	Splicing factor 3B subunit 4; structure genomics,	99.66
2cq3_A	103	RNA-binding protein 9; RRM domain, structural geno	99.66
3bs9_A	87	Nucleolysin TIA-1 isoform P40; RNA recognition mot	99.66
2cqi_A	103	Nucleolysin TIAR; RNA recognition motif, RRM, RNA	99.66
3md1_A	83	Nuclear and cytoplasmic polyadenylated RNA-bindin	99.66
2lxi_A	91	RNA-binding protein 10; NMR {Homo sapiens}	99.66
2cpf_A	98	RNA binding motif protein 19; RNA recognition moti	99.66
1s79_A	103	Lupus LA protein; RRM, alpha/beta, RNA binding pro	99.65
3s8s_A	110	Histone-lysine N-methyltransferase SETD1A; chromat	99.65
2e5g_A	94	U6 snRNA-specific terminal uridylyltransferase 1;	99.65
1wi8_A	104	EIF-4B, eukaryotic translation initiation factor 4	99.65
2dgv_A	92	HnRNP M, heterogeneous nuclear ribonucleoprotein M	99.65
3p5t_L	90	Cleavage and polyadenylation specificity factor S;	99.65
2dng_A	103	Eukaryotic translation initiation factor 4H; RRM d	99.65
2mss_A	75	Protein (musashi1); RNA-binding domain, RNA bindin	99.65
2dnm_A	103	SRP46 splicing factor; RRM domain, RBD, structural	99.64
2ywk_A	95	Putative RNA-binding protein 11; RRM-domain, struc	99.64
2cq0_A	103	Eukaryotic translation initiation factor 3 subunit	99.64
2dh8_A	105	DAZ-associated protein 1; RRM domain, structural g	99.63
1wez_A	102	HnRNP H', FTP-3, heterogeneous nuclear ribonucleop	99.63
2dgo_A	115	Cytotoxic granule-associated RNA binding protein 1	99.63
2e5h_A	94	Zinc finger CCHC-type and RNA-binding motif- conta	99.63
2d9p_A	103	Polyadenylate-binding protein 3; RRM domain, struc	99.63
2rs2_A	109	Musashi-1, RNA-binding protein musashi homolog 1;	99.63
3lqv_A	115	PRE-mRNA branch site protein P14; cysless mutant,	99.63
1x4b_A	116	Heterogeneous nuclear ribonucleoproteins A2/B1; st	99.63
2dnn_A	109	RNA-binding protein 12; RRM domain, RBD, structura	99.63
2cpz_A	115	CUG triplet repeat RNA-binding protein 1; RRM doma	99.62
2x1f_A	96	MRNA 3'-END-processing protein RNA15; transcriptio	99.62
1p27_B	106	RNA-binding protein 8A; nuclear protein, mRNA spli	99.62
1wg5_A	104	Heterogeneous nuclear ribonucleoprotein H; structu	99.62
2cqc_A	95	Arginine/serine-rich splicing factor 10; RNA recog	99.62
2dnq_A	90	RNA-binding protein 4B; RRM domain,RBD, structural	99.62
2dgt_A	92	RNA-binding protein 30; RRM domain, structural gen	99.62
2dgw_A	91	Probable RNA-binding protein 19; RRM domain, struc	99.62
2cq4_A	114	RNA binding motif protein 23; RRM domain, structur	99.62
2err_A	109	Ataxin-2-binding protein 1; protein-RNA complex, R	99.62
2db1_A	118	Heterogeneous nuclear ribonucleoprotein F; RRM dom	99.62
2jwn_A	124	Embryonic polyadenylate-binding protein 2-B; epabp	99.61
2jrs_A	108	RNA-binding protein 39; RNA binding motif of RBM39	99.61
1oo0_B	110	CG8781-PA, drosophila Y14; RNA recognition motif,	99.61
2do4_A	100	Squamous cell carcinoma antigen recognized by T- c	99.61
1iqt_A	75	AUF1, heterogeneous nuclear ribonucleoprotein D0;	99.61
1x4c_A	108	Splicing factor, arginine/serine-rich 1; structura	99.61
2dnp_A	90	RNA-binding protein 14; RRM domain, RBD, structura	99.61
1x5u_A	105	Splicing factor 3B subunit 4 (spliceosome associat	99.61
2do0_A	114	HnRNP M, heterogeneous nuclear ribonucleoprotein M	99.61
1x4g_A	109	Nucleolysin TIAR; structural genomics, RRM domain,	99.61
2fy1_A	116	RNA-binding motif protein, Y chromosome, family 1	99.61
2cph_A	107	RNA binding motif protein 19; RNA recognition moti	99.61
2jvr_A	111	Nucleolar protein 3; RNA recognition motif, nucleu	99.6
2cpj_A	99	Non-POU domain-containing octamer-binding protein;	99.6
2lkz_A	95	RNA-binding protein 5; RRM; NMR {Homo sapiens}	99.6
3ulh_A	107	THO complex subunit 4; nuclear protein, RNA bindin	99.6
1sjq_A	105	Polypyrimidine tract-binding protein 1; babbab mot	99.6
2div_A	99	TRNA selenocysteine associated protein; structural	99.6
2cpy_A	114	RNA-binding protein 12; RRM domain, structural gen	99.6
2cqg_A	103	TDP-43, TAR DNA-binding protein-43; RNA recognitio	99.6
1x4h_A	111	RNA-binding protein 28; structural genomics, RRM d	99.6
2kt5_A	124	RNA and export factor-binding protein 2; chaperone	99.6
2ki2_A	90	SS-DNA binding protein 12RNP2; HP0827, RRM, SS-DNA	99.6
2j76_E	100	EIF-4B, EIF4B, eukaryotic translation initiation f	99.6
2dgp_A	106	Bruno-like 4, RNA binding protein; RRM domain, str	99.6
2cqp_A	98	RNA-binding protein 12; RNA recognition motif, RRM	99.59
2dnh_A	105	Bruno-like 5, RNA binding protein; RRM domain, RBD	99.59
2khc_A	118	Testis-specific RNP-type RNA binding protein; RRM,	99.59
2la6_A	99	RNA-binding protein FUS; structural genomics, nort	99.59
2cqd_A	116	RNA-binding region containing protein 1; RNA recog	99.59
2cpi_A	111	CCR4-NOT transcription complex subunit 4; RNA reco	99.59
2ek1_A	95	RNA-binding protein 12; RNA recognition motif, dim	99.59
2krb_A	81	Eukaryotic translation initiation factor 3 subunit	99.59
2ytc_A	85	PRE-mRNA-splicing factor RBM22; RRM domain, RBD, s	99.59
3ns6_A	100	Eukaryotic translation initiation factor 3 subuni;	99.59
2cpe_A	113	RNA-binding protein EWS; RNA recognition motif, RR	99.59
1why_A	97	Hypothetical protein riken cDNA 1810017N16; RNA re	99.59
1nu4_A	97	U1A RNA binding domain; RNA recognition motif, U1	99.59
2wbr_A	89	GW182, gawky, LD47780P; DNA-binding protein, RRM,	99.58
2cq1_A	101	PTB-like protein L; RRM domain, structural genomic	99.58
2hvz_A	101	Splicing factor, arginine/serine-rich 7; RRM, RNA	99.58
1x4d_A	102	Matrin 3; structural genomics, RRM domain, NPPSFA,	99.58
2cpd_A	99	Apobec-1 stimulating protein; RNA recognition moti	99.58
2hgl_A	136	HNRPF protein, heterogeneous nuclear ribonucleopro	99.58
2hzc_A	87	Splicing factor U2AF 65 kDa subunit; RNA splicing,	99.57
2lmi_A	107	GRSF-1, G-rich sequence factor 1; G-rich RNA seque	99.57
2dgu_A	103	Heterogeneous nuclear ribonucleoprotein Q; RRM dom	99.57
2nlw_A	105	Eukaryotic translation initiation factor 3 subunit	99.57
1p1t_A	104	Cleavage stimulation factor, 64 kDa subunit; RNA r	99.57
1x4e_A	85	RNA binding motif, single-stranded interacting pro	99.57
1h2v_Z	156	20 kDa nuclear CAP binding protein; CAP-binding-co	99.57
1wel_A	124	RNA-binding protein 12; structural genomics, NPPSF	99.57
1uaw_A	77	Mouse-musashi-1; RNP-type structure, RNA binding p	99.57
2la4_A	101	Nuclear and cytoplasmic polyadenylated RNA-bindin	99.57
2ad9_A	119	Polypyrimidine tract-binding protein 1; RBD, RRM,	99.57
2fc9_A	101	NCL protein; structure genomics, RRM_1 domain, str	99.57
2dhg_A	104	TRNA selenocysteine associated protein (SECP43); R	99.57
2jvo_A	108	Nucleolar protein 3; nucleus, phosphorylation, rib	99.57
3ex7_B	126	RNA-binding protein 8A; protein-RNA complex, mRNA	99.57
2e44_A	96	Insulin-like growth factor 2 mRNA binding protein	99.57
1wf1_A	110	RNA-binding protein RALY; structural genomics, RRM	99.56
2kvi_A	96	Nuclear polyadenylated RNA-binding protein 3; RNA-	99.56
2xnq_A	97	Nuclear polyadenylated RNA-binding protein 3; tran	99.56
1u6f_A	139	Tcubp1, RNA-binding protein UBP1; trypanosome, mRN	99.56
3n9u_C	156	Cleavage and polyadenylation specificity factor S;	99.56
2ku7_A	140	MLL1 PHD3-CYP33 RRM chimeric protein; transcriptio	99.56
2e5j_A	97	Methenyltetrahydrofolate synthetase domain contain	99.55
2kn4_A	158	Immunoglobulin G-binding protein G, splicing FACT	99.55
2dis_A	109	Unnamed protein product; structural genomics, RRM	99.55
1whx_A	111	Hypothetical protein riken cDNA 1200009A02; RNA re	99.55
1wex_A	104	Hypothetical protein (riken cDNA 2810036L13); stru	99.55
2kxn_B	129	Transformer-2 protein homolog beta; SR protein, RR	99.55
2cqh_A	93	IGF-II mRNA-binding protein 2 isoform A; RNA recog	99.54
1fjc_A	96	Nucleolin RBD2, protein C23; RNP, RRM, RNA binding	99.54
2a3j_A	127	U1 small nuclear ribonucleoprotein A; computationa	99.54
2dha_A	123	FLJ20171 protein; RRM domain, structural genomics,	99.54
2i2y_A	150	Fusion protein consists of immunoglobin G- binding	99.54
2hgn_A	139	Heterogeneous nuclear ribonucleoprotein F; RNA rec	99.54
3md3_A	166	Nuclear and cytoplasmic polyadenylated RNA-bindin	99.53
2xs2_A	102	Deleted in azoospermia-like; RNA binding protein-R	99.53
3r27_A	100	HnRNP L, heterogeneous nuclear ribonucleoprotein L	99.53
3d2w_A	89	TAR DNA-binding protein 43; DP-43 proteinopathy, T	99.53
1wf0_A	88	TDP-43, TAR DNA-binding protein-43; structural gen	99.53
2hgm_A	126	HNRPF protein, heterogeneous nuclear ribonucleopro	99.53
1wg1_A	88	KIAA1579 protein, homolog EXC-7; RBD, structural g	99.53
1fj7_A	101	Nucleolin RBD1, protein C23; RNP, RRM, RNA binding	99.53
1fxl_A	167	Paraneoplastic encephalomyelitis antigen HUD; prot	99.52
3beg_B	115	Splicing factor, arginine/serine-rich 1; kinase, S	99.52
2cpx_A	115	Hypothetical protein FLJ11016; RRM domain, structu	99.52
1x5o_A	114	RNA binding motif, single-stranded interacting pro	99.51
1rk8_A	165	CG8781-PA, CG8781-PA protein; mRNA processing, RRM	99.51
2lea_A	135	Serine/arginine-rich splicing factor 2; SR protein	99.51
1l3k_A	196	Heterogeneous nuclear ribonucleoprotein A1; nuclea	99.5
1b7f_A	168	Protein (SXL-lethal protein), RNA (5'-R(P*GP*UP*UP	99.5
2m2b_A	131	RNA-binding protein 10; T-cell, JCSG, MPP, PSI-bio	99.49
3egn_A	143	RNA-binding protein 40; RNA recognition motif (RRM	99.49
1x4f_A	112	Matrin 3; structural genomics, RRM domain, NPPSFA,	99.49
2voo_A	193	Lupus LA protein; RNA-binding protein, RNA recogni	99.49
2fc8_A	102	NCL protein; structure genomics, RRM_1 domain, str	99.49
4f02_A	213	Polyadenylate-binding protein 1; mRNA, eukaryotic	99.49
2f3j_A	177	RNA and export factor binding protein 2; RRM domai	99.49
3q2s_C	229	Cleavage and polyadenylation specificity factor S;	99.48
1x5p_A	97	Negative elongation factor E; structure genomics,	99.48
1l3k_A	196	Heterogeneous nuclear ribonucleoprotein A1; nuclea	99.48
2dnl_A	114	Cytoplasmic polyadenylation element binding protei	99.48
2lcw_A	116	RNA-binding protein FUS; RRM, nucleic acid binding	99.21
4f02_A	213	Polyadenylate-binding protein 1; mRNA, eukaryotic	99.47
2qfj_A	216	FBP-interacting repressor; protein-DNA complex; HE	99.47
2cjk_A	167	Nuclear polyadenylated RNA-binding protein 4; HRP1	99.47
3md3_A	166	Nuclear and cytoplasmic polyadenylated RNA-bindin	99.47
3tyt_A	205	Heterogeneous nuclear ribonucleoprotein L; ferredo	99.46
3nmr_A	175	Cugbp ELAV-like family member 1; RRM, PRE-mRNA spl	99.45
2qfj_A	216	FBP-interacting repressor; protein-DNA complex; HE	99.44
2g4b_A	172	Splicing factor U2AF 65 kDa subunit; protein-RNA c	99.44
1qm9_A	198	Polypyrimidine tract-binding protein; ribonucleopr	99.44
1sjr_A	164	Polypyrimidine tract-binding protein 1; extended b	99.44
3zzy_A	130	Polypyrimidine tract-binding protein 1; protein bi	99.43
2g4b_A	172	Splicing factor U2AF 65 kDa subunit; protein-RNA c	99.43
2cq2_A	114	Hypothetical protein LOC91801; RRM domain, structu	99.42
2cjk_A	167	Nuclear polyadenylated RNA-binding protein 4; HRP1	99.42
2e5i_A	124	Heterogeneous nuclear ribonucleoprotein L-like; RR	99.42
2yh0_A	198	Splicing factor U2AF 65 kDa subunit; PRE-mRNA spli	99.41
3pgw_A	282	U1-A; protein-RNA complex, U1 snRNA, SM fold, SM c	99.41
2adc_A	229	Polypyrimidine tract-binding protein 1; RBD, RRM,	99.41
2diu_A	96	KIAA0430 protein; structural genomics, RRM domain,	99.41
2ghp_A	292	U4/U6 snRNA-associated splicing factor PRP24; RNA	99.41
2yh0_A	198	Splicing factor U2AF 65 kDa subunit; PRE-mRNA spli	99.4
1fje_B	175	Nucleolin RBD12, protein C23; RNP, RRM, RNA bindin	99.4
2j8a_A	136	Histone-lysine N-methyltransferase, H3 lysine-4 sp	99.38
3pgw_S	437	U1-70K; protein-RNA complex, U1 snRNA, SM fold, SM	99.38
3nmr_A	175	Cugbp ELAV-like family member 1; RRM, PRE-mRNA spl	99.37
3sde_A	261	Paraspeckle component 1; RRM, anti parallel right	99.37
2bz2_A	121	Negative elongation factor E; NELF E, RNA recognit	99.37
1b7f_A	168	Protein (SXL-lethal protein), RNA (5'-R(P*GP*UP*UP	99.37
2ghp_A	292	U4/U6 snRNA-associated splicing factor PRP24; RNA	99.37
1fje_B	175	Nucleolin RBD12, protein C23; RNP, RRM, RNA bindin	99.33
1fxl_A	167	Paraneoplastic encephalomyelitis antigen HUD; prot	99.33
3pgw_A	282	U1-A; protein-RNA complex, U1 snRNA, SM fold, SM c	99.33
2dit_A	112	HIV TAT specific factor 1 variant; structural geno	99.33
3smz_A	284	Protein raver-1, ribonucleoprotein PTB-binding 1;	99.33
2pe8_A	105	Splicing factor 45; RRM, protein binding; 2.00A {H	99.33
3u1l_A	240	PRE-mRNA-splicing factor CWC2; CSMP, zinc finger;	99.32
1qm9_A	198	Polypyrimidine tract-binding protein; ribonucleopr	99.31
3smz_A	284	Protein raver-1, ribonucleoprotein PTB-binding 1;	99.3
2adc_A	229	Polypyrimidine tract-binding protein 1; RBD, RRM,	99.27
3tyt_A	205	Heterogeneous nuclear ribonucleoprotein L; ferredo	99.24
3sde_A	261	Paraspeckle component 1; RRM, anti parallel right	99.18
1jmt_A	104	Splicing factor U2AF 35 kDa subunit; RRM, RNA spli	99.14
2d9o_A	100	DNAJ (HSP40) homolog, subfamily C, member 17; RRM	99.12
3v4m_A	105	Splicing factor U2AF 65 kDa subunit; canonical RNA	99.11
3ue2_A	118	Poly(U)-binding-splicing factor PUF60; RNA recogni	99.05
1owx_A	121	Lupus LA protein, SS-B, LA; RRM, transcription; NM	99.04
3tht_A	345	Alkylated DNA repair protein ALKB homolog 8; struc	98.97
2dnr_A	91	Synaptojanin-1; RRM domain, RBD, structural genomi	98.96
3s6e_A	114	RNA-binding protein 39; ferredoxin-like, structura	98.95
1ufw_A	95	Synaptojanin 2; RNP domain, structural genomics, r	98.74
3dxb_A	222	Thioredoxin N-terminally fused to PUF60(UHM); spli	98.27
2l9w_A	117	U4/U6 snRNA-associated-splicing factor PRP24; RRM,	98.24
2dhx_A	104	Poly (ADP-ribose) polymerase family, member 10 var	98.11
1wwh_A	119	Nucleoporin 35, nucleoporin; structural genomics,	97.79
1wey_A	104	Calcipressin 1; structural genomics, RRM domain, r	97.47
3p3d_A	132	Nucleoporin 53; structural genomics, PSI-2, protei	97.37
1uw4_A	91	UPF3X; nonsense mediated mRNA decay protein, RNA-b	96.85
3pq1_A	464	Poly(A) RNA polymerase; nucleotidyl transferase, R	95.92
1whv_A	100	Poly(A)-specific ribonuclease; RNA recognition mot	95.82
3ctr_A	101	Poly(A)-specific ribonuclease PARN; protein-RNA-co	95.17
2l08_A	97	Regulator of nonsense transcripts 3A; NESG, nonsen	94.36
3d45_A	507	Poly(A)-specific ribonuclease PARN; CAP analogue,	81.03

>4fxv_A ELAV-like protein 1; RNA recognition motif, putative RNA-binding domain, transcri structural genomics, joint center for structural genomics; 1.90A {Homo sapiens}

Probab=99.73  E-value=1.8e-17  Score=126.22  Aligned_cols=78  Identities=23%  Similarity=0.317  Sum_probs=70.2

Q ss_pred             CCCCcEEEEeCCCCCCCHHHHHHHhccCCCceEEEEeecCC---cCceEEEEecCHHHHHHHH-hcCCCeecCeeEEEEe
Q 026156            2 YAGGYVAEVVGLSPNATEKDIHEFFSHCGDPVHVEIIRSGE---CGGTAYVTFSNAYALETAV-LLSGATIVDQPVCIIR   77 (242)
Q Consensus         2 ~~~~~tV~VsNLs~~~TE~dLrefFs~~G~I~~V~l~~~~~---~~~~AfV~F~~~~aA~tAl-~Lng~~l~g~~I~V~~   77 (242)
                      +..+++|||+|||+++||++|+++|+.||+|.+|++.++..   ..++|||+|.++++|+.|+ .|||..|+|++|.|..
T Consensus        16 ~~~gt~lfV~nLp~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~kG~afV~f~~~~~A~~Ai~~lng~~~~gr~l~V~~   95 (99)
T 4fxv_A           16 YFQGTNLIVNYLPQNMTQDELRSLFSSIGEVESAKLIRDKVAGHSLGYGFVNYVTAKDAERAINTLNGLRLQSKTIKVSY   95 (99)
T ss_dssp             CCCCSEEEEESCCTTCCHHHHHHHHHTTSCEEEEEEEECSSSCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEE
T ss_pred             cCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEeEeeecCCCCcccccEEEEECCHHHHHHHHHHhCCCEECCEEEEEEE
Confidence            44568999999999999999999999999999999998754   2369999999999999995 7999999999999987


Q ss_pred             cC
Q 026156           78 WG   79 (242)
Q Consensus        78 a~   79 (242)
                      +.
T Consensus        96 Ak   97 (99)
T 4fxv_A           96 AR   97 (99)
T ss_dssp             CC
T ss_pred             ee
Confidence            64

>4f25_A Polyadenylate-binding protein 1; RRM fold, translation initiation, RNA-binding, EIF4G-binding translation; 1.90A {Homo sapiens} PDB: 4f26_A 2k8g_A

Probab=99.69  E-value=1.1e-16  Score=124.35  Aligned_cols=77  Identities=19%  Similarity=0.286  Sum_probs=70.1

Q ss_pred             CcEEEEeCCCCCCCHHHHHHHhccCCCceEEEEeecCCc-CceEEEEecCHHHHHHHH-hcCCCeecCeeEEEEecCCC
Q 026156            5 GYVAEVVGLSPNATEKDIHEFFSHCGDPVHVEIIRSGEC-GGTAYVTFSNAYALETAV-LLSGATIVDQPVCIIRWGEY   81 (242)
Q Consensus         5 ~~tV~VsNLs~~~TE~dLrefFs~~G~I~~V~l~~~~~~-~~~AfV~F~~~~aA~tAl-~Lng~~l~g~~I~V~~a~~~   81 (242)
                      ..+|||+|||+.+||++|+++|+.||.|.+|+|+++.+. .+||||+|.++++|+.|+ .|||..|.|+.|.|..+.+.
T Consensus         5 ~~~lfV~nLp~~~te~~L~~~F~~~G~v~~v~i~~d~~~~kg~afV~f~~~~~A~~Ai~~l~~~~~~g~~i~V~~a~~~   83 (115)
T 4f25_A            5 SGNIFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENGSKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFVGRFKSR   83 (115)
T ss_dssp             CCEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEEETTEEEEEEEEEESCHHHHHHHHHHHTTCEETTEECEEEESSCC
T ss_pred             CCEEEECCCCCCCCHHHHHHHHhccCCEEEEEEeecCCCCCceEEEEECCHHHHHHHHHHcCCCEECCEEEEEEECCCc
Confidence            468999999999999999999999999999999987653 469999999999999995 79999999999999987543

>3mdf_A Peptidyl-prolyl CIS-trans isomerase E; RRM domain, PHD finger, CYP33, MLL, RNA binding protein, ISO mRNA processing, mRNA splicing, nucleus; 1.85A {Homo sapiens} SCOP: d.58.7.1 PDB: 2kyx_A 3lpy_A*

Probab=99.68  E-value=1.9e-16  Score=115.15  Aligned_cols=78  Identities=23%  Similarity=0.253  Sum_probs=70.4

Q ss_pred             CCCCCcEEEEeCCCCCCCHHHHHHHhccCCCceEEEEeecCC---cCceEEEEecCHHHHHHHH-hcCCCeecCeeEEEE
Q 026156            1 MYAGGYVAEVVGLSPNATEKDIHEFFSHCGDPVHVEIIRSGE---CGGTAYVTFSNAYALETAV-LLSGATIVDQPVCII   76 (242)
Q Consensus         1 M~~~~~tV~VsNLs~~~TE~dLrefFs~~G~I~~V~l~~~~~---~~~~AfV~F~~~~aA~tAl-~Lng~~l~g~~I~V~   76 (242)
                      |.+..++|||+|||+.+++++|+++|+.||+|.+|.+..+..   ..++|||+|.++++|..|+ .|||..|+|++|.|.
T Consensus         3 ~~~~~~~l~V~nl~~~~~~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~   82 (85)
T 3mdf_A            3 MATTKRVLYVGGLAEEVDDKVLHAAFIPFGDITDIQIPLDYETEKHRGFAFVEFELAEDAAAAIDNMNESELFGRTIRVN   82 (85)
T ss_dssp             CCCCSSEEEEECCCTTCCHHHHHHHHGGGSCEEEEECCEETTTTEECSEEEEEESSHHHHHHHHHHHTTCEETTEECEEE
T ss_pred             CCCCCCEEEEECCCCCCCHHHHHHHHhccCCEEEEEEEECCCCCccccEEEEEECCHHHHHHHHHHhCCCEECCcEEEEE
Confidence            456678999999999999999999999999999999987643   3479999999999999996 899999999999998


Q ss_pred             ec
Q 026156           77 RW   78 (242)
Q Consensus        77 ~a   78 (242)
                      .+
T Consensus        83 ~a   84 (85)
T 3mdf_A           83 LA   84 (85)
T ss_dssp             EC
T ss_pred             Ec
Confidence            64

>4a8x_A RNA-binding protein with serine-rich domain 1; transcription, splicing, RNA processing, nonsense mediated D NMD, HDAC, histone deacetylation; 1.90A {Homo sapiens}

Probab=99.68  E-value=2.7e-16  Score=114.84  Aligned_cols=77  Identities=25%  Similarity=0.270  Sum_probs=69.8

Q ss_pred             CCcEEEEeCCCCCCCHHHHHHHhccCCCceEEEEeecCC----cCceEEEEecCHHHHHHHH-hcCCCeecCeeEEEEec
Q 026156            4 GGYVAEVVGLSPNATEKDIHEFFSHCGDPVHVEIIRSGE----CGGTAYVTFSNAYALETAV-LLSGATIVDQPVCIIRW   78 (242)
Q Consensus         4 ~~~tV~VsNLs~~~TE~dLrefFs~~G~I~~V~l~~~~~----~~~~AfV~F~~~~aA~tAl-~Lng~~l~g~~I~V~~a   78 (242)
                      ..++|||+|||+.+|+++|+++|+.||.|.+|.+..+..    ..++|||+|.++++|+.|+ .|||..|+|+.|.|..+
T Consensus         3 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~i~~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a   82 (88)
T 4a8x_A            3 KPTKVHIGRLTRNVTKDHIMEIFSTYGKIKMIDMPVERMHPHLSKGYAYVEFENPDEAEKALKHMDGGQIDGQEITATAV   82 (88)
T ss_dssp             CCCEEEEECCCTTCCHHHHHHHHHTTSCEEEEECCEETTEEEEECSEEEEEESSHHHHHHHHHHHTTCEETTEECEEEEE
T ss_pred             CCCEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEEeCCCCCCCCCcEEEEEEecHHHHHHHHHHcCCCeECCeEEEEEEC
Confidence            457999999999999999999999999999999987753    4579999999999999996 59999999999999987


Q ss_pred             CC
Q 026156           79 GE   80 (242)
Q Consensus        79 ~~   80 (242)
                      .+
T Consensus        83 ~~   84 (88)
T 4a8x_A           83 LA   84 (88)
T ss_dssp             CC
T ss_pred             CC
Confidence            43

>3ucg_A Polyadenylate-binding protein 2; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG, protein structure initiative; HET: PGE; 1.95A {Homo sapiens} PDB: 3b4d_A 3b4m_A

Probab=99.68  E-value=2.9e-16  Score=115.14  Aligned_cols=76  Identities=21%  Similarity=0.288  Sum_probs=69.7

Q ss_pred             CcEEEEeCCCCCCCHHHHHHHhccCCCceEEEEeecCC---cCceEEEEecCHHHHHHHHhcCCCeecCeeEEEEecCC
Q 026156            5 GYVAEVVGLSPNATEKDIHEFFSHCGDPVHVEIIRSGE---CGGTAYVTFSNAYALETAVLLSGATIVDQPVCIIRWGE   80 (242)
Q Consensus         5 ~~tV~VsNLs~~~TE~dLrefFs~~G~I~~V~l~~~~~---~~~~AfV~F~~~~aA~tAl~Lng~~l~g~~I~V~~a~~   80 (242)
                      .++|||+|||+.+++++|+++|+.||.|.+|.+..+..   ..++|||+|.++++|+.|+.|||..|.|+.|.|..+.+
T Consensus         6 ~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~a~~~~g~~~~g~~l~V~~a~~   84 (89)
T 3ucg_A            6 ARSIYVGNVDYGATAEELEAHFHGCGSVNRVTILCDKFSGHPKGFAYIEFSDKESVRTSLALDESLFRGRQIKVIPKRT   84 (89)
T ss_dssp             HTEEEEESCCTTCCHHHHHHHHGGGCCEEEEEEEESCSSSSCCEEEEEEESSTHHHHHHGGGTTCEETTEECEEEETTT
T ss_pred             CCEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEEecCCCCCcceEEEEEECCHHHHHHHHhcCCCEECCcEEEEEEccC
Confidence            47999999999999999999999999999999997643   34699999999999999999999999999999998753

>2dgs_A DAZ-associated protein 1; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.67  E-value=4.4e-16  Score=116.87  Aligned_cols=78  Identities=23%  Similarity=0.310  Sum_probs=70.6

Q ss_pred             CCcEEEEeCCCCCCCHHHHHHHhccCCCceEEEEeecCC---cCceEEEEecCHHHHHHHHhcCCCeecCeeEEEEecCC
Q 026156            4 GGYVAEVVGLSPNATEKDIHEFFSHCGDPVHVEIIRSGE---CGGTAYVTFSNAYALETAVLLSGATIVDQPVCIIRWGE   80 (242)
Q Consensus         4 ~~~tV~VsNLs~~~TE~dLrefFs~~G~I~~V~l~~~~~---~~~~AfV~F~~~~aA~tAl~Lng~~l~g~~I~V~~a~~   80 (242)
                      ..++|||+|||+.+++++|+++|+.||.|.+|.|+.+..   ..++|||+|.++++|+.|+.|||..|.|+.|.|..+.+
T Consensus         9 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~~~~~~~g~~l~V~~a~~   88 (99)
T 2dgs_A            9 KSNKIFVGGIPHNCGETELREYFKKFGVVTEVVMIYDAEKQRPRGFGFITFEDEQSVDQAVNMHFHDIMGKKVEVKRAEP   88 (99)
T ss_dssp             SCCEEEEESCCSSCCHHHHHHHHSSSSCEEEEEECCCTTTCSCCSEEEEEESSHHHHHHHHHHCCCBSSSCBCEEEECCC
T ss_pred             CCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEeCCCCCCCCceEEEEECCHHHHHHHHHhCCCEECCeEEEEEECCC
Confidence            347999999999999999999999999999999997643   35799999999999999988999999999999998754


Q ss_pred             C
Q 026156           81 Y   81 (242)
Q Consensus        81 ~   81 (242)
                      .
T Consensus        89 ~   89 (99)
T 2dgs_A           89 R   89 (99)
T ss_dssp             C
T ss_pred             C
Confidence            3

>2dgx_A KIAA0430 protein; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1

Probab=99.67  E-value=2.9e-16  Score=118.00  Aligned_cols=79  Identities=19%  Similarity=0.148  Sum_probs=71.4

Q ss_pred             CCCcEEEEeCCCCCCCHHHHH----HHhccCCCceEEEEeecCCcCceEEEEecCHHHHHHHH-hcCCCeecCeeEEEEe
Q 026156            3 AGGYVAEVVGLSPNATEKDIH----EFFSHCGDPVHVEIIRSGECGGTAYVTFSNAYALETAV-LLSGATIVDQPVCIIR   77 (242)
Q Consensus         3 ~~~~tV~VsNLs~~~TE~dLr----efFs~~G~I~~V~l~~~~~~~~~AfV~F~~~~aA~tAl-~Lng~~l~g~~I~V~~   77 (242)
                      +..++|||+|||+.+++++|+    ++|+.||+|.+|.|+.+....++|||+|.++++|+.|+ .|||..|+|+.|.|..
T Consensus         7 ~~~~~l~V~nL~~~~~~~~l~~~l~~~F~~~G~v~~v~i~~~~~~rg~afV~f~~~~~A~~Ai~~l~g~~~~gr~l~V~~   86 (96)
T 2dgx_A            7 GNGADVQVSNIDYRLSRKELQQLLQEAFARHGKVKSVELSPHTDYQLKAVVQMENLQDAIGAVNSLHRYKIGSKKILVSL   86 (96)
T ss_dssp             SSCEEEEEESCCTTSCHHHHHHHHHHHHHHHSCEEEEEECSCCSTTCCEEEEESSHHHHHHHHHHHTTEEETTEEEEEEE
T ss_pred             CCCCEEEEECCCCCCCHHHHHHHHHHhccccCcEEEEEEEeCCCCCeEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEE
Confidence            345799999999999999999    99999999999999977555679999999999999995 6999999999999998


Q ss_pred             cCCC
Q 026156           78 WGEY   81 (242)
Q Consensus        78 a~~~   81 (242)
                      +.+.
T Consensus        87 a~~~   90 (96)
T 2dgx_A           87 ATGA   90 (96)
T ss_dssp             CCCS
T ss_pred             cCCC
Confidence            7543

>1x5s_A Cold-inducible RNA-binding protein; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1

Probab=99.67  E-value=2.1e-16  Score=119.14  Aligned_cols=82  Identities=23%  Similarity=0.348  Sum_probs=73.2

Q ss_pred             CCCCCcEEEEeCCCCCCCHHHHHHHhccCCCceEEEEeecCC---cCceEEEEecCHHHHHHHH-hcCCCeecCeeEEEE
Q 026156            1 MYAGGYVAEVVGLSPNATEKDIHEFFSHCGDPVHVEIIRSGE---CGGTAYVTFSNAYALETAV-LLSGATIVDQPVCII   76 (242)
Q Consensus         1 M~~~~~tV~VsNLs~~~TE~dLrefFs~~G~I~~V~l~~~~~---~~~~AfV~F~~~~aA~tAl-~Lng~~l~g~~I~V~   76 (242)
                      |.+..++|||+|||+.+++++|+++|+.||+|.+|.|+.+..   ..++|||+|.++++|..|+ .|||..|.|+.|.|.
T Consensus         8 ~~~~~~~l~v~nLp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~   87 (102)
T 1x5s_A            8 MASDEGKLFVGGLSFDTNEQSLEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAKDAMMAMNGKSVDGRQIRVD   87 (102)
T ss_dssp             CCCCCSEEEEESCCTTCCHHHHHHHHHHHSCCCEEEECCCSSSCSCCSEEEEECSSHHHHHHHHHHHTTCCTTSCCCEEE
T ss_pred             CCCCCCEEEEECCCCCCCHHHHHHHHHhcCCeEEEEEEeCCCCCCcccEEEEEECCHHHHHHHHHHhCCCEECCeEEEEE
Confidence            456678999999999999999999999999999999997643   3469999999999999996 999999999999999


Q ss_pred             ecCCCC
Q 026156           77 RWGEYT   82 (242)
Q Consensus        77 ~a~~~~   82 (242)
                      .+.+..
T Consensus        88 ~a~~~~   93 (102)
T 1x5s_A           88 QAGKSS   93 (102)
T ss_dssp             EEECCC
T ss_pred             ECCCCC
Confidence            876543

>3s7r_A Heterogeneous nuclear ribonucleoprotein A/B; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG; 2.15A {Homo sapiens} PDB: 1hd0_A 1hd1_A

Probab=99.67  E-value=4.2e-16  Score=114.21  Aligned_cols=75  Identities=19%  Similarity=0.259  Sum_probs=68.2

Q ss_pred             CCcEEEEeCCCCCCCHHHHHHHhccCCCceEEEEeecCC---cCceEEEEecCHHHHHHHHhcCCCeecCeeEEEEec
Q 026156            4 GGYVAEVVGLSPNATEKDIHEFFSHCGDPVHVEIIRSGE---CGGTAYVTFSNAYALETAVLLSGATIVDQPVCIIRW   78 (242)
Q Consensus         4 ~~~tV~VsNLs~~~TE~dLrefFs~~G~I~~V~l~~~~~---~~~~AfV~F~~~~aA~tAl~Lng~~l~g~~I~V~~a   78 (242)
                      ..++|||+|||+.+++++|+++|+.||.|.+|.++.+..   ..++|||+|.++++|+.|+.++|..|.|+.|.|..+
T Consensus        10 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~~~~~~~g~~i~v~~A   87 (87)
T 3s7r_A           10 DAGKMFVGGLSWDTSKKDLKDYFTKFGEVVDCTIKMDPNTGRSRGFGFILFKDAASVEKVLDQKEHRLDGRVIDPKKA   87 (87)
T ss_dssp             CTTEEEEECCCTTCCHHHHHHHHTTTSCEEEEEEEECTTTCCEEEEEEEEESSTHHHHHHHHSSCEEETTEEEEEEEC
T ss_pred             CCCEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEeecCCCCccccEEEEEECCHHHHHHHHHhCCCEECCEEEEEEeC
Confidence            457999999999999999999999999999999997743   246999999999999999988999999999999753

>2dnz_A Probable RNA-binding protein 23; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.67  E-value=5.5e-16  Score=115.15  Aligned_cols=80  Identities=21%  Similarity=0.310  Sum_probs=71.4

Q ss_pred             CCCcEEEEeCCCCCCCHHHHHHHhccCCCceEEEEeecCC---cCceEEEEecCHHHHHHHH-hcCCCeecCeeEEEEec
Q 026156            3 AGGYVAEVVGLSPNATEKDIHEFFSHCGDPVHVEIIRSGE---CGGTAYVTFSNAYALETAV-LLSGATIVDQPVCIIRW   78 (242)
Q Consensus         3 ~~~~tV~VsNLs~~~TE~dLrefFs~~G~I~~V~l~~~~~---~~~~AfV~F~~~~aA~tAl-~Lng~~l~g~~I~V~~a   78 (242)
                      +..++|||+|||+.+++++|+++|+.||+|.+|.+..+..   ..++|||+|.++++|+.|+ .|||..|.|+.|.|..+
T Consensus         3 ~~~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a   82 (95)
T 2dnz_A            3 SGSSGLYVGSLHFNITEDMLRGIFEPFGKIDNIVLMKDSDTGRSKGYGFITFSDSECARRALEQLNGFELAGRPMRVGHV   82 (95)
T ss_dssp             SCCCEEEEESCCTTCCHHHHHHHHTTTSCEEEEEEECCSSSCCCCSEEEEEESCHHHHHHHHHHHTTCCSSSSCCEEEES
T ss_pred             CCCcEEEEeCCCCCCCHHHHHHHHHhcCCEeEEEEeecCCCCceeeEEEEEECCHHHHHHHHHHhCCCeeCCcEEEEEEc
Confidence            4568999999999999999999999999999999998743   3469999999999999996 59999999999999987


Q ss_pred             CCCC
Q 026156           79 GEYT   82 (242)
Q Consensus        79 ~~~~   82 (242)
                      .+..
T Consensus        83 ~~~~   86 (95)
T 2dnz_A           83 TERL   86 (95)
T ss_dssp             SCCC
T ss_pred             cccc
Confidence            6543

>1whw_A Hypothetical protein riken cDNA 1200009A02; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1

Probab=99.67  E-value=5e-16  Score=116.39  Aligned_cols=79  Identities=20%  Similarity=0.160  Sum_probs=71.0

Q ss_pred             CCcEEEEeCCCCCCCHHHHHHHhccCCCceEEEEeecCC---cCceEEEEecCHHHHHHHH-hcCCCeecCeeEEEEecC
Q 026156            4 GGYVAEVVGLSPNATEKDIHEFFSHCGDPVHVEIIRSGE---CGGTAYVTFSNAYALETAV-LLSGATIVDQPVCIIRWG   79 (242)
Q Consensus         4 ~~~tV~VsNLs~~~TE~dLrefFs~~G~I~~V~l~~~~~---~~~~AfV~F~~~~aA~tAl-~Lng~~l~g~~I~V~~a~   79 (242)
                      ..++|||+|||+.+++++|+++|+.||+|.+|.+..+..   ..++|||+|.++++|+.|+ .|||..|.|+.|.|..+.
T Consensus         7 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a~   86 (99)
T 1whw_A            7 GSGRLFVRNLSYTSSEEDLEKLFSAYGPLSELHYPIDSLTKKPKGFAFVTFMFPEHAVKAYAEVDGQVFQGRMLHVLPST   86 (99)
T ss_dssp             SCEEEEEECCCTTCCHHHHHHHHHTTSCEEEEECCCCTTTCCCCSEEEEEESSHHHHHHHHHHTTTEESSSCEEEEEECC
T ss_pred             CCCEEEEeCCCCCCCHHHHHHHHHhcCCEeEEEEEecCCCCCcCeEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEEcC
Confidence            458999999999999999999999999999999997642   3479999999999999996 999999999999999876


Q ss_pred             CCC
Q 026156           80 EYT   82 (242)
Q Consensus        80 ~~~   82 (242)
                      +..
T Consensus        87 ~~~   89 (99)
T 1whw_A           87 IKK   89 (99)
T ss_dssp             CCS
T ss_pred             CCc
Confidence            543

>2cqb_A Peptidyl-prolyl CIS-trans isomerase E; RNA recognition motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1

Probab=99.66  E-value=4.1e-16  Score=117.48  Aligned_cols=81  Identities=22%  Similarity=0.236  Sum_probs=72.1

Q ss_pred             CCCCCcEEEEeCCCCCCCHHHHHHHhccCCCceEEEEeecCC---cCceEEEEecCHHHHHHHH-hcCCCeecCeeEEEE
Q 026156            1 MYAGGYVAEVVGLSPNATEKDIHEFFSHCGDPVHVEIIRSGE---CGGTAYVTFSNAYALETAV-LLSGATIVDQPVCII   76 (242)
Q Consensus         1 M~~~~~tV~VsNLs~~~TE~dLrefFs~~G~I~~V~l~~~~~---~~~~AfV~F~~~~aA~tAl-~Lng~~l~g~~I~V~   76 (242)
                      |.+..++|||+|||+.+++++|+++|+.||+|.+|.|+.+..   ..++|||+|.++++|+.|+ .|||..|.|+.|.|.
T Consensus         8 ~~~~~~~l~V~nLp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~   87 (102)
T 2cqb_A            8 MATTKRVLYVGGLAEEVDDKVLHAAFIPFGDITDIQIPLDYETEKHRGFAFVEFELAEDAAAAIDNMNESELFGRTIRVN   87 (102)
T ss_dssp             SCCCCSCEEEESCCSSCCHHHHHHHHTTTSCCCCEECCCCSSSCCCSSEEEECCSSHHHHHHHHHHHTTEEETTEEEEEE
T ss_pred             cCCCCCEEEEeCCCCCCCHHHHHHHhhccCCEEEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHhCCCEECCcEEEEE
Confidence            455668999999999999999999999999999999987633   3579999999999999996 799999999999999


Q ss_pred             ecCCC
Q 026156           77 RWGEY   81 (242)
Q Consensus        77 ~a~~~   81 (242)
                      .+.+.
T Consensus        88 ~a~~~   92 (102)
T 2cqb_A           88 LAKPM   92 (102)
T ss_dssp             ECCCC
T ss_pred             eCCCC
Confidence            77543

>1x4a_A Splicing factor, arginine/serine-rich 1 (splicing factor 2, alternate splicing factor)...; structure genomics, SURP domain, splicing factor SF2; NMR {Homo sapiens} SCOP: d.58.7.1

Probab=99.66  E-value=6.4e-16  Score=118.10  Aligned_cols=78  Identities=19%  Similarity=0.146  Sum_probs=71.0

Q ss_pred             CCcEEEEeCCCCCCCHHHHHHHhccCCCceEEEEeecCCcCceEEEEecCHHHHHHHH-hcCCCeecCeeEEEEecCCC
Q 026156            4 GGYVAEVVGLSPNATEKDIHEFFSHCGDPVHVEIIRSGECGGTAYVTFSNAYALETAV-LLSGATIVDQPVCIIRWGEY   81 (242)
Q Consensus         4 ~~~tV~VsNLs~~~TE~dLrefFs~~G~I~~V~l~~~~~~~~~AfV~F~~~~aA~tAl-~Lng~~l~g~~I~V~~a~~~   81 (242)
                      ..++|||+|||+.+|+++|+++|+.||.|.+|.|..++...++|||+|.++++|+.|+ .|||..|.|+.|.|..+.+.
T Consensus        21 ~~~~l~V~nLp~~~t~~~l~~~F~~~G~v~~~~i~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~a~~~   99 (109)
T 1x4a_A           21 NDCRIYVGNLPPDIRTKDIEDVFYKYGAIRDIDLKNRRGGPPFAFVEFEDPRDAEDAVYGRDGYDYDGYRLRVEFPRSG   99 (109)
T ss_dssp             CSSEEEEESCCTTCCHHHHHHHHGGGSCEEEEEECCSSSSSCCEEEEESCHHHHHHHHHHHTTCEETTEECEEECCCCC
T ss_pred             CCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECCCCCcEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEEcccC
Confidence            3479999999999999999999999999999999877666689999999999999996 99999999999999976543

>1x5t_A Splicing factor 3B subunit 4; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1

Probab=99.66  E-value=5.8e-16  Score=115.24  Aligned_cols=79  Identities=22%  Similarity=0.345  Sum_probs=70.5

Q ss_pred             CCCcEEEEeCCCCCCCHHHHHHHhccCCCceEE-EEeecCC---cCceEEEEecCHHHHHHHH-hcCCCeecCeeEEEEe
Q 026156            3 AGGYVAEVVGLSPNATEKDIHEFFSHCGDPVHV-EIIRSGE---CGGTAYVTFSNAYALETAV-LLSGATIVDQPVCIIR   77 (242)
Q Consensus         3 ~~~~tV~VsNLs~~~TE~dLrefFs~~G~I~~V-~l~~~~~---~~~~AfV~F~~~~aA~tAl-~Lng~~l~g~~I~V~~   77 (242)
                      +..++|||+|||+.+++++|+++|+.||.|.+| .|+.+..   ..++|||+|.++++|+.|+ .|||..|.|+.|.|..
T Consensus         3 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~   82 (96)
T 1x5t_A            3 SGSSGIFIGNLDPEIDEKLLYDTFSAFGVILQTPKIMRDPDTGNSKGYAFINFASFDASDAAIEAMNGQYLCNRPITVSY   82 (96)
T ss_dssp             SCCCEEEEECCCTTCCHHHHHHHHHTTSCBSSCCEECCCTTTCSCCSEEEEEBSSHHHHHHHHHTTTTCEETTEECEEEE
T ss_pred             CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEEEcCCCCCcCeEEEEEECCHHHHHHHHHHcCCCEECCEEEEEEE
Confidence            456899999999999999999999999999999 9987633   3479999999999999996 5999999999999998


Q ss_pred             cCCC
Q 026156           78 WGEY   81 (242)
Q Consensus        78 a~~~   81 (242)
                      +.+.
T Consensus        83 a~~~   86 (96)
T 1x5t_A           83 AFKK   86 (96)
T ss_dssp             SCCC
T ss_pred             eccc
Confidence            7543

>2cq3_A RNA-binding protein 9; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1

Probab=99.66  E-value=1.2e-15  Score=115.22  Aligned_cols=79  Identities=20%  Similarity=0.273  Sum_probs=71.0

Q ss_pred             CCcEEEEeCCCCCCCHHHHHHHhccCCCceEEEEeecCC-cCceEEEEecCHHHHHHHH-hcCCCeecCeeEEEEecCCC
Q 026156            4 GGYVAEVVGLSPNATEKDIHEFFSHCGDPVHVEIIRSGE-CGGTAYVTFSNAYALETAV-LLSGATIVDQPVCIIRWGEY   81 (242)
Q Consensus         4 ~~~tV~VsNLs~~~TE~dLrefFs~~G~I~~V~l~~~~~-~~~~AfV~F~~~~aA~tAl-~Lng~~l~g~~I~V~~a~~~   81 (242)
                      ..++|||+|||+.+++++|+++|+.||.|.+|.|..+.. ..++|||+|.++++|+.|+ .|||..|+|+.|.|..+.+.
T Consensus        14 ~~~~l~V~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~~~   93 (103)
T 2cq3_A           14 TPKRLHVSNIPFRFRDPDLRQMFGQFGKILDVEIIFNERGSKGFGFVTFENSADADRAREKLHGTVVEGRKIEVNNATAR   93 (103)
T ss_dssp             CCCEEEEESCCTTCCHHHHHHHGGGTSCEEEEEEECCTTTTCCEEEEEESCHHHHHHHHHHHTTCEETTEECEEEECCSS
T ss_pred             CCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCcEEEEEEECCHHHHHHHHHHhCCCEECCEEEEEEEcccC
Confidence            458999999999999999999999999999999997754 3579999999999999996 69999999999999987654


Q ss_pred             C
Q 026156           82 T   82 (242)
Q Consensus        82 ~   82 (242)
                      +
T Consensus        94 ~   94 (103)
T 2cq3_A           94 V   94 (103)
T ss_dssp             C
T ss_pred             C
Confidence            3

>3bs9_A Nucleolysin TIA-1 isoform P40; RNA recognition motif, RRM, RNA binding domain, RBD, RNA splicing, apoptosis, phosphoprotein, RNA-binding; 1.95A {Homo sapiens}

Probab=99.66  E-value=5.6e-16  Score=113.16  Aligned_cols=78  Identities=19%  Similarity=0.268  Sum_probs=68.6

Q ss_pred             CCCcEEEEeCCCCCCCHHHHHHHhccCCCceEEEEeecCC---cCceEEEEecCHHHHHHHH-hcCCCeecCeeEEEEec
Q 026156            3 AGGYVAEVVGLSPNATEKDIHEFFSHCGDPVHVEIIRSGE---CGGTAYVTFSNAYALETAV-LLSGATIVDQPVCIIRW   78 (242)
Q Consensus         3 ~~~~tV~VsNLs~~~TE~dLrefFs~~G~I~~V~l~~~~~---~~~~AfV~F~~~~aA~tAl-~Lng~~l~g~~I~V~~a   78 (242)
                      +..++|||+|||+.+++++|+++|+.||.|.+|.+..+..   ..++|||+|.++++|+.|+ .|||..|+|+.|.|..+
T Consensus         4 ~~~~~l~v~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a   83 (87)
T 3bs9_A            4 GSHFHVFVGDLSPEITTAAIAAAFAPFGRISDARVVKDMATGKSKGYGFVSFFNKWDAENAIQQMGGQWLGGRQIRTNWA   83 (87)
T ss_dssp             --CEEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEEE
T ss_pred             CCceEEEEeCCCCCCCHHHHHHHHHhcCCEeEEEEEecCCCCccceEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEec
Confidence            3458999999999999999999999999999999998643   2469999999999999995 69999999999999976


Q ss_pred             CC
Q 026156           79 GE   80 (242)
Q Consensus        79 ~~   80 (242)
                      .+
T Consensus        84 ~~   85 (87)
T 3bs9_A           84 TR   85 (87)
T ss_dssp             C-
T ss_pred             CC
Confidence            53

>2cqi_A Nucleolysin TIAR; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, ST genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1

Probab=99.66  E-value=8.2e-16  Score=116.19  Aligned_cols=76  Identities=21%  Similarity=0.194  Sum_probs=69.6

Q ss_pred             CcEEEEeCCCCCCCHHHHHHHhccCCCceEEEEeecCC-cCceEEEEecCHHHHHHHH-hcCCCeecCeeEEEEecCC
Q 026156            5 GYVAEVVGLSPNATEKDIHEFFSHCGDPVHVEIIRSGE-CGGTAYVTFSNAYALETAV-LLSGATIVDQPVCIIRWGE   80 (242)
Q Consensus         5 ~~tV~VsNLs~~~TE~dLrefFs~~G~I~~V~l~~~~~-~~~~AfV~F~~~~aA~tAl-~Lng~~l~g~~I~V~~a~~   80 (242)
                      .++|||+|||+.+++++|+++|+.||.|.+|.|..+.. ..++|||+|.++++|..|+ .|||..|.|+.|.|..+.+
T Consensus        15 ~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a~~   92 (103)
T 2cqi_A           15 PRTLYVGNLSRDVTEVLILQLFSQIGPCKSCKMITEHTSNDPYCFVEFYEHRDAAAALAAMNGRKILGKEVKVNWATT   92 (103)
T ss_dssp             CCEEEEESCCTTCCHHHHHHHHHHHSCEEEEEEECCCCSSCCEEEEEESSHHHHHHHHHHHTTEEETTEEEEEEECCC
T ss_pred             CCEEEEeCCCccCCHHHHHHHHHhcCCEeEEEEEecCCCCCCEEEEEECCHHHHHHHHHHhCCCCcCCCeEEEEECCC
Confidence            47999999999999999999999999999999998754 3479999999999999996 5999999999999998754

>3md1_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RBD, RNP, poly(U) binding, nucleus, RNA-binding, binding protein; 1.60A {Saccharomyces cerevisiae} SCOP: d.58.7.0

Probab=99.66  E-value=6.4e-16  Score=111.88  Aligned_cols=75  Identities=15%  Similarity=0.244  Sum_probs=68.1

Q ss_pred             cEEEEeCCCCCCCHHHHHHHhccCCCceEEEEeecCC---cCceEEEEecCHHHHHHHH-hcCCCeecCeeEEEEecCC
Q 026156            6 YVAEVVGLSPNATEKDIHEFFSHCGDPVHVEIIRSGE---CGGTAYVTFSNAYALETAV-LLSGATIVDQPVCIIRWGE   80 (242)
Q Consensus         6 ~tV~VsNLs~~~TE~dLrefFs~~G~I~~V~l~~~~~---~~~~AfV~F~~~~aA~tAl-~Lng~~l~g~~I~V~~a~~   80 (242)
                      ++|||+|||+.+++++|+++|+.||+|.+|.+..+..   ..++|||+|.++++|+.|+ .|||..|+|++|.|..+.+
T Consensus         2 ~~l~V~nlp~~~t~~~l~~~f~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~a~~a~~~l~g~~~~g~~l~v~~a~~   80 (83)
T 3md1_A            2 FNLFVGDLNVNVDDETLRNAFKDFPSYLSGHVMWDMQTGSSRGYGFVSFTSQDDAQNAMDSMQGQDLNGRPLRINWAAK   80 (83)
T ss_dssp             EEEEEECCCTTCCHHHHHHHHTTSTTEEEEEEEECTTTCCEEEEEEEEESCHHHHHHHHHHHTTCEETTEECEEEECCC
T ss_pred             eEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEEcCCCCCccceEEEEECCHHHHHHHHHHhcCCeeCCcEEEEEecCc
Confidence            6899999999999999999999999999999997743   3469999999999999996 5999999999999997653

>2lxi_A RNA-binding protein 10; NMR {Homo sapiens}

Probab=99.66  E-value=1.3e-16  Score=119.40  Aligned_cols=76  Identities=22%  Similarity=0.235  Sum_probs=66.5

Q ss_pred             cEEEEeCCCCCCCHHHHHHHhccCC-CceEEEEeecCC---cCceEEEEecCHHHHHHHH-hc-CCCeecCeeEEEEecC
Q 026156            6 YVAEVVGLSPNATEKDIHEFFSHCG-DPVHVEIIRSGE---CGGTAYVTFSNAYALETAV-LL-SGATIVDQPVCIIRWG   79 (242)
Q Consensus         6 ~tV~VsNLs~~~TE~dLrefFs~~G-~I~~V~l~~~~~---~~~~AfV~F~~~~aA~tAl-~L-ng~~l~g~~I~V~~a~   79 (242)
                      ++|||+|||+++||++|+++|+.|| .|.+|+|+++..   ..+||||+|.++++|+.|+ .+ ++..|+|++|.|..+.
T Consensus         2 ~~i~v~nLp~~~te~~l~~~F~~~G~~v~~v~i~~d~~t~~~rg~aFV~F~~~~~A~~Ai~~~~~~~~~~gr~i~V~~a~   81 (91)
T 2lxi_A            2 NIVMLRMLPQAATEDDIRGQLQSHGVQAREVRLMRNKSSGQSRGFAFVEFSHLQDATRWMEANQHSLNILGQKVSMHYSD   81 (91)
T ss_dssp             CEEEEETCCSSCCHHHHHHHHHHHTCCCSBCCSSSCSSSCCCSSEEEEECSSHHHHHHHHHTTTTEEEETTEEEEEECCC
T ss_pred             CEEEEeCCCCCCCHHHHHHHHHHhCCEeEEEEEEecCCCCCcCceEEEEecCHHHHHHHHHhcCCCeEECCEEEEEEEcC
Confidence            5899999999999999999999999 899999997643   3579999999999999996 44 5668999999998765


Q ss_pred             CC
Q 026156           80 EY   81 (242)
Q Consensus        80 ~~   81 (242)
                      +.
T Consensus        82 ~~   83 (91)
T 2lxi_A           82 PK   83 (91)
T ss_dssp             SC
T ss_pred             CC
Confidence            43

>2cpf_A RNA binding motif protein 19; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1

Probab=99.66  E-value=1e-15  Score=114.47  Aligned_cols=79  Identities=18%  Similarity=0.211  Sum_probs=70.3

Q ss_pred             CCCcEEEEeCCCCCCCHHHHHHHhccCCCceEEEEeecCC------cCceEEEEecCHHHHHHHH-hcCCCeecCeeEEE
Q 026156            3 AGGYVAEVVGLSPNATEKDIHEFFSHCGDPVHVEIIRSGE------CGGTAYVTFSNAYALETAV-LLSGATIVDQPVCI   75 (242)
Q Consensus         3 ~~~~tV~VsNLs~~~TE~dLrefFs~~G~I~~V~l~~~~~------~~~~AfV~F~~~~aA~tAl-~Lng~~l~g~~I~V   75 (242)
                      +..++|||+|||+.+++++|+++|+.||+|.+|.+..+..      ..++|||+|.++++|+.|+ .|||..|.|+.|.|
T Consensus         3 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~gt~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V   82 (98)
T 2cpf_A            3 SGSSGLFIKNLNFSTTEETLKGVFSKVGAIKSCTISKKKNKAGVLLSMGFGFVEYKKPEQAQKALKQLQGHTVDGHKLEV   82 (98)
T ss_dssp             CCCCCEEEESCCTTCCHHHHHHHHHTTSCEEEEEEEEEECTTCCEEEEEEEEEEESSHHHHHHHHHHSTTCEETTEECEE
T ss_pred             CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCCCcCcccEEEEEECCHHHHHHHHHHhCCCeeCCeEEEE
Confidence            4568999999999999999999999999999999997643      2369999999999999996 59999999999999


Q ss_pred             EecCCC
Q 026156           76 IRWGEY   81 (242)
Q Consensus        76 ~~a~~~   81 (242)
                      ..+.+.
T Consensus        83 ~~a~~~   88 (98)
T 2cpf_A           83 RISERA   88 (98)
T ss_dssp             ECSSCS
T ss_pred             EEccCC
Confidence            987543

>1s79_A Lupus LA protein; RRM, alpha/beta, RNA binding protein, translation; NMR {Homo sapiens} SCOP: d.58.7.1

Probab=99.65  E-value=1.7e-16  Score=122.08  Aligned_cols=76  Identities=18%  Similarity=0.305  Sum_probs=69.5

Q ss_pred             CcEEEEeCCCCCCCHHHHHHHhccCCCceEEEEeecCC--cCceEEEEecCHHHHHHHHhcCCCeecCeeEEEEecCC
Q 026156            5 GYVAEVVGLSPNATEKDIHEFFSHCGDPVHVEIIRSGE--CGGTAYVTFSNAYALETAVLLSGATIVDQPVCIIRWGE   80 (242)
Q Consensus         5 ~~tV~VsNLs~~~TE~dLrefFs~~G~I~~V~l~~~~~--~~~~AfV~F~~~~aA~tAl~Lng~~l~g~~I~V~~a~~   80 (242)
                      .++|||+|||+.+|+++|+++|+.||+|.+|.|+++..  ..++|||+|.++++|..|+.+||..|+|+.|.|....+
T Consensus        11 ~~~lfV~~Lp~~~te~~L~~~F~~~G~v~~v~i~~d~~g~~rG~aFV~F~~~e~a~~Ai~~~~~~~~gr~l~V~~~~~   88 (103)
T 1s79_A           11 NRSVYIKGFPTDATLDDIKEWLEDKGQVLNIQMRRTLHKAFKGSIFVVFDSIESAKKFVETPGQKYKETDLLILFKDD   88 (103)
T ss_dssp             GGCEEEECCCTTCCHHHHHHHHHTSSCEEEEEEECCCTTSCCCEEEEEESSHHHHHHHHTSSCCCCTTTTCEEEEHHH
T ss_pred             CCEEEEECCCCCCCHHHHHHHHhhcCCEEEEEEEECCCCCCccEEEEEECCHHHHHHHHHcCCCEECCEEEEEEEchH
Confidence            47999999999999999999999999999999997643  45799999999999999988999999999999986544

>3s8s_A Histone-lysine N-methyltransferase SETD1A; chromatin modification, transcription regulation, structural genomics, structural genomics consortium; 1.30A {Homo sapiens}

Probab=99.65  E-value=8.6e-16  Score=119.26  Aligned_cols=74  Identities=18%  Similarity=0.132  Sum_probs=68.3

Q ss_pred             CcEEEEeCCCCCCCHHHHHHHhccCCCceEEEEeecCC---cCceEEEEecCHHHHHHHH-hcCCCeecCeeEEEEec
Q 026156            5 GYVAEVVGLSPNATEKDIHEFFSHCGDPVHVEIIRSGE---CGGTAYVTFSNAYALETAV-LLSGATIVDQPVCIIRW   78 (242)
Q Consensus         5 ~~tV~VsNLs~~~TE~dLrefFs~~G~I~~V~l~~~~~---~~~~AfV~F~~~~aA~tAl-~Lng~~l~g~~I~V~~a   78 (242)
                      .++|||+||++.++|++|+++|+.||+|.+|.|+.+..   ..+||||+|.++++|+.|+ .|||..|.|+.|.|..+
T Consensus         6 ~~~lfV~nL~~~~te~~L~~~F~~~G~i~~v~i~~d~~tg~~rG~aFV~f~~~~~A~~Ai~~lng~~~~gr~i~V~~a   83 (110)
T 3s8s_A            6 LKEVTFARLNDNVRETFLKDMCRKYGEVEEVEILLHPRTRKHLGLARVLFTSTRGAKETVKNLHLTSVMGNIIHAQLD   83 (110)
T ss_dssp             CCEEEEESCCTTCCHHHHHHHHTTTSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEEC
T ss_pred             CcEEEEECCCCCCCHHHHHHHHHhcCCeeEEEEEECCCCCceeeEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEEC
Confidence            47999999999999999999999999999999998754   3469999999999999995 79999999999999875

>2e5g_A U6 snRNA-specific terminal uridylyltransferase 1; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.65  E-value=1.1e-15  Score=114.03  Aligned_cols=76  Identities=17%  Similarity=0.166  Sum_probs=65.7

Q ss_pred             CCcEEEEeCCCCCCCHHHHHHHhccCCCceEEEEeecCCcCceEEEEecCHHHHHHHHhcCCCeecCeeEEEEecCCC
Q 026156            4 GGYVAEVVGLSPNATEKDIHEFFSHCGDPVHVEIIRSGECGGTAYVTFSNAYALETAVLLSGATIVDQPVCIIRWGEY   81 (242)
Q Consensus         4 ~~~tV~VsNLs~~~TE~dLrefFs~~G~I~~V~l~~~~~~~~~AfV~F~~~~aA~tAl~Lng~~l~g~~I~V~~a~~~   81 (242)
                      ..++|||+|||+.+|+++|+++|+.||.|.+|  +.+.....+|||+|.++++|+.|+.|||..|+|+.|.|..+.+.
T Consensus         7 ~~~~l~V~nl~~~~t~~~l~~~F~~~G~v~~v--~~~~~~g~~afV~f~~~~~a~~ai~l~g~~~~g~~l~V~~a~~~   82 (94)
T 2e5g_A            7 GLRSVFVSGFPRGVDSAQLSEYFLAFGPVASV--VMDKDKGVFAIVEMGDVGAREAVLSQSQHSLGGHRLRVRPREQK   82 (94)
T ss_dssp             TCCEEEEECCCTTCCHHHHHHHGGGTSCEEEE--EECSSSCCEEEEEESSHHHHHHHHTCSCCEETTEECCCBCSCCS
T ss_pred             CCCEEEEECCCCCCCHHHHHHHHHhcCCeEEE--EEcCCCCcEEEEEECCHHHHHHHHhcCCeEECCEEEEEEECCcC
Confidence            45799999999999999999999999999998  33333223999999999999999779999999999999866443

>1wi8_A EIF-4B, eukaryotic translation initiation factor 4B; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Homo sapiens} SCOP: d.58.7.1

Probab=99.65  E-value=1.1e-15  Score=115.76  Aligned_cols=77  Identities=22%  Similarity=0.259  Sum_probs=69.8

Q ss_pred             CCcEEEEeCCCCCCCHHHHHHHhccCCCceEEEEeecCC----cCceEEEEecCHHHHHHHHhcCCCeecCeeEEEEecC
Q 026156            4 GGYVAEVVGLSPNATEKDIHEFFSHCGDPVHVEIIRSGE----CGGTAYVTFSNAYALETAVLLSGATIVDQPVCIIRWG   79 (242)
Q Consensus         4 ~~~tV~VsNLs~~~TE~dLrefFs~~G~I~~V~l~~~~~----~~~~AfV~F~~~~aA~tAl~Lng~~l~g~~I~V~~a~   79 (242)
                      ..++|||+|||+.+++++|+++|+.|| |.+|.|+.+..    ..++|||+|.++++|+.|+.|||..|.|+.|.|..+.
T Consensus        14 ~~~~l~V~nlp~~~t~~~l~~~F~~~G-i~~v~i~~~~~~~g~~~g~afV~f~~~~~a~~A~~l~g~~~~g~~l~V~~a~   92 (104)
T 1wi8_A           14 PPYTAFLGNLPYDVTEESIKEFFRGLN-ISAVRLPREPSNPERLKGFGYAEFEDLDSLLSALSLNEESLGNKRIRVDVAD   92 (104)
T ss_dssp             SCEEEEEESCCSSCCHHHHHHHTTTSC-EEEEECCBCSSCTTSBCSCEEEEESSHHHHHHHHGGGTCEETTEECEEEECC
T ss_pred             CCCEEEEeCCCCcCCHHHHHHHHHHCC-ceEEEEecCCCCCCCcCeEEEEEECCHHHHHHHHhcCCCEeCCcEEEEEEcc
Confidence            347999999999999999999999999 99999997743    3579999999999999999999999999999999875


Q ss_pred             CC
Q 026156           80 EY   81 (242)
Q Consensus        80 ~~   81 (242)
                      +.
T Consensus        93 ~~   94 (104)
T 1wi8_A           93 QA   94 (104)
T ss_dssp             CC
T ss_pred             CC
Confidence            43

>2dgv_A HnRNP M, heterogeneous nuclear ribonucleoprotein M; RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} PDB: 2dh9_A

Probab=99.65  E-value=5.9e-16  Score=114.34  Aligned_cols=80  Identities=19%  Similarity=0.245  Sum_probs=71.0

Q ss_pred             CCCcEEEEeCCCCCCCHHHHHHHhccCCCceEEEEeecCC-cCceEEEEecCHHHHHHHH-hcCCCeecCeeEEEEecCC
Q 026156            3 AGGYVAEVVGLSPNATEKDIHEFFSHCGDPVHVEIIRSGE-CGGTAYVTFSNAYALETAV-LLSGATIVDQPVCIIRWGE   80 (242)
Q Consensus         3 ~~~~tV~VsNLs~~~TE~dLrefFs~~G~I~~V~l~~~~~-~~~~AfV~F~~~~aA~tAl-~Lng~~l~g~~I~V~~a~~   80 (242)
                      +..++|||+|||+.+++++|+++|+.||+|.+|.+..+.+ ..++|||+|.++++|+.|+ .|||..|.|+.|.|..+.+
T Consensus         6 ~~~~~l~V~nlp~~~t~~~l~~~f~~~G~v~~~~i~~~~g~~~g~afV~f~~~~~a~~a~~~l~g~~~~g~~l~v~~a~~   85 (92)
T 2dgv_A            6 SGACQIFVRNLPFDFTWKMLKDKFNECGHVLYADIKMENGKSKGCGVVKFESPEVAERACRMMNGMKLSGREIDVRIDRN   85 (92)
T ss_dssp             SSCCEEEECSCCTTCCHHHHHHHHHTTSCEEEEEEEESSSCEEEEEEEEESSHHHHHHHHHHHTTCCBTTBCCCCEECSC
T ss_pred             CCCcEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEccCCCcceEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEEcCC
Confidence            4458999999999999999999999999999999998644 3479999999999999995 6999999999999998755


Q ss_pred             CC
Q 026156           81 YT   82 (242)
Q Consensus        81 ~~   82 (242)
                      ..
T Consensus        86 ~~   87 (92)
T 2dgv_A           86 AS   87 (92)
T ss_dssp             CS
T ss_pred             CC
Confidence            43

>3p5t_L Cleavage and polyadenylation specificity factor S; RRM domain, poly(A) site recognition, RNA, nuclear, RNA BIND protein; 2.70A {Homo sapiens} PDB: 3p6y_C

Probab=99.65  E-value=1.3e-16  Score=118.32  Aligned_cols=78  Identities=15%  Similarity=0.171  Sum_probs=65.2

Q ss_pred             cEEEEeCCCCCCCHHHHHHHhccCC--CceEEEEeecCC---cCceEEEEecCHHHHHHHH-hcCCCeecCeeEEEEecC
Q 026156            6 YVAEVVGLSPNATEKDIHEFFSHCG--DPVHVEIIRSGE---CGGTAYVTFSNAYALETAV-LLSGATIVDQPVCIIRWG   79 (242)
Q Consensus         6 ~tV~VsNLs~~~TE~dLrefFs~~G--~I~~V~l~~~~~---~~~~AfV~F~~~~aA~tAl-~Lng~~l~g~~I~V~~a~   79 (242)
                      .+|||+|||+.+|+++|+++|+.||  .|.+|.++.+..   ..++|||+|.++++|+.|+ .|||..|+|+.|.|..+.
T Consensus         2 ~~l~V~nL~~~~t~~~l~~~F~~~G~~~v~~v~i~~~~~~g~~kG~afV~f~~~~~a~~Ai~~l~g~~~~gr~i~V~~~~   81 (90)
T 3p5t_L            2 IALYIGNLTWWTTDEDLTEAVHSLGVNDILEIKFFENRANGQSKGFALVGVGSEASSKKLMDLLPKRELHGQNPVVTPSN   81 (90)
T ss_dssp             --CEEESCCTTCCHHHHHHHHHTTTCCCCCCEEEEECTTTCCEEEEEEECC-CHHHHHHHHHHGGGSCSSSCCCEECCC-
T ss_pred             eEEEEeCCCCCCCHHHHHHHHHHhCCCceEEEEEEecCCCCccCcEEEEEECCHHHHHHHHHHcCCCeeCCEEEEEEECC
Confidence            5899999999999999999999999  999999998743   3469999999999999996 899999999999999876


Q ss_pred             CCCC
Q 026156           80 EYTD   83 (242)
Q Consensus        80 ~~~~   83 (242)
                      +.+.
T Consensus        82 ~~~~   85 (90)
T 3p5t_L           82 KLEH   85 (90)
T ss_dssp             ----
T ss_pred             CCcc
Confidence            5443

>2dng_A Eukaryotic translation initiation factor 4H; RRM domain, RBD, structural genomics, NPPSFA; NMR {Mus musculus}

Probab=99.65  E-value=1.8e-15  Score=114.41  Aligned_cols=77  Identities=25%  Similarity=0.310  Sum_probs=69.6

Q ss_pred             CCcEEEEeCCCCCCCHHHHHHHhccCCCceEEEEeecCC---cCceEEEEecCHHHHHHHHhcCCCeecCeeEEEEecCC
Q 026156            4 GGYVAEVVGLSPNATEKDIHEFFSHCGDPVHVEIIRSGE---CGGTAYVTFSNAYALETAVLLSGATIVDQPVCIIRWGE   80 (242)
Q Consensus         4 ~~~tV~VsNLs~~~TE~dLrefFs~~G~I~~V~l~~~~~---~~~~AfV~F~~~~aA~tAl~Lng~~l~g~~I~V~~a~~   80 (242)
                      ..++|||+|||+.+++++|+++|+.|| |.+|.|+.+..   ..++|||+|.++++|+.|+.|||..|.|+.|.|..+.+
T Consensus        14 ~~~~l~V~nLp~~~t~~~l~~~F~~~g-i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~l~g~~~~g~~l~V~~a~~   92 (103)
T 2dng_A           14 PPYTAYVGNLPFNTVQGDIDAIFKDLS-IRSVRLVRDKDTDKFKGFCYVEFDEVDSLKEALTYDGALLGDRSLRVDIAEG   92 (103)
T ss_dssp             SCEEEEEESCCTTCCHHHHHHHTTTSC-EEEEEEEECSSSCSEEEEEEEEESSHHHHHHHGGGTTCEETTEECEEEECCC
T ss_pred             CCeEEEEeCCCCCCCHHHHHHHHHhCC-ceEEEEeecCCCCccceEEEEEECCHHHHHHHHhhCCCeECCeEEEEEEecC
Confidence            347999999999999999999999997 99999998754   24699999999999999999999999999999998754


Q ss_pred             C
Q 026156           81 Y   81 (242)
Q Consensus        81 ~   81 (242)
                      .
T Consensus        93 ~   93 (103)
T 2dng_A           93 R   93 (103)
T ss_dssp             C
T ss_pred             C
Confidence            3

>2mss_A Protein (musashi1); RNA-binding domain, RNA binding protein; NMR {Mus musculus} SCOP: d.58.7.1 PDB: 2mst_A

Probab=99.65  E-value=2.3e-16  Score=112.60  Aligned_cols=71  Identities=23%  Similarity=0.260  Sum_probs=65.5

Q ss_pred             EEEEeCCCCCCCHHHHHHHhccCCCceEEEEeecCC---cCceEEEEecCHHHHHHHHhcCCCeecCeeEEEEe
Q 026156            7 VAEVVGLSPNATEKDIHEFFSHCGDPVHVEIIRSGE---CGGTAYVTFSNAYALETAVLLSGATIVDQPVCIIR   77 (242)
Q Consensus         7 tV~VsNLs~~~TE~dLrefFs~~G~I~~V~l~~~~~---~~~~AfV~F~~~~aA~tAl~Lng~~l~g~~I~V~~   77 (242)
                      +|||+|||+.+++++|+++|+.||+|.+|.+..+..   ..++|||+|.++++|+.|+.|||..|+|++|.|..
T Consensus         1 ~l~v~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~a~~~~~~~~~g~~l~v~~   74 (75)
T 2mss_A            1 KIFVGGLSVNTTVEDVKHYFEQFGKVDDAMLMFDKTTNRHRGFGFVTFESEDIVEKVCEIHFHEINNKMVECKK   74 (75)
T ss_dssp             CEEEECCCSSCCHHHHHHHHHTTSCCSEECCCBCSSSTTSCBEEEEECSCHHHHHHHHSSSCCCSSSCCCEEEC
T ss_pred             CEEEecCCCCCCHHHHHHHHHhcCCEEEEEEEecCCCCCcCcEEEEEECCHHHHHHHHHCCCCEECCEEEEEEe
Confidence            589999999999999999999999999999987643   34799999999999999988999999999999975

>2dnm_A SRP46 splicing factor; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.64  E-value=7.9e-16  Score=116.29  Aligned_cols=78  Identities=19%  Similarity=0.194  Sum_probs=70.1

Q ss_pred             CCcEEEEeCCCCCCCHHHHHHHhccCCCceEEEEeecCC---cCceEEEEecCHHHHHHHH-hcCCCeecCeeEEEEecC
Q 026156            4 GGYVAEVVGLSPNATEKDIHEFFSHCGDPVHVEIIRSGE---CGGTAYVTFSNAYALETAV-LLSGATIVDQPVCIIRWG   79 (242)
Q Consensus         4 ~~~tV~VsNLs~~~TE~dLrefFs~~G~I~~V~l~~~~~---~~~~AfV~F~~~~aA~tAl-~Lng~~l~g~~I~V~~a~   79 (242)
                      ..++|||+|||+.+++++|+++|+.||.|.+|.|..+..   ..++|||+|.++++|+.|+ .|||..|.|+.|.|..+.
T Consensus        12 ~~~~l~V~nLp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~a~   91 (103)
T 2dnm_A           12 GMITLKVDNLTYRTSPDSLRRVFEKYGRVGDVYIPREPHTKAPRGFAFVRFHDRRDAQDAEAAMDGAELDGRELRVQVAR   91 (103)
T ss_dssp             CCCEEEEESCCTTCCHHHHHHHHTTTSCEEEEECCBCSSSCSBCSCEEEEESSSSHHHHHHHHHSSCCBTTBCCEEEECS
T ss_pred             CCeEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEeCCCCCCCCeEEEEEECCHHHHHHHHHHcCCCEECCcEEEEEECC
Confidence            347999999999999999999999999999999997643   3479999999999999996 599999999999999875


Q ss_pred             CC
Q 026156           80 EY   81 (242)
Q Consensus        80 ~~   81 (242)
                      +.
T Consensus        92 ~~   93 (103)
T 2dnm_A           92 YG   93 (103)
T ss_dssp             SC
T ss_pred             cC
Confidence            43

>2ywk_A Putative RNA-binding protein 11; RRM-domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; 1.54A {Homo sapiens}

Probab=99.64  E-value=7.8e-16  Score=114.31  Aligned_cols=75  Identities=21%  Similarity=0.300  Sum_probs=68.0

Q ss_pred             CcEEEEeCCCCCCCHHHHHHHhccCCCceEEEEeecCC--cCceEEEEecCHHHHHHHH-hcCCCeecCeeEEEEecC
Q 026156            5 GYVAEVVGLSPNATEKDIHEFFSHCGDPVHVEIIRSGE--CGGTAYVTFSNAYALETAV-LLSGATIVDQPVCIIRWG   79 (242)
Q Consensus         5 ~~tV~VsNLs~~~TE~dLrefFs~~G~I~~V~l~~~~~--~~~~AfV~F~~~~aA~tAl-~Lng~~l~g~~I~V~~a~   79 (242)
                      .++|||+|||+.+++++|+++|+.||+|.+|.|..+..  ..++|||+|.++++|+.|+ .|||..|.|+.|.|..+.
T Consensus        16 ~~~l~v~nlp~~~~~~~l~~~F~~~G~i~~v~i~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a~   93 (95)
T 2ywk_A           16 DRTVFVGNLEARVREEILYELFLQAGPLTKVTICKDREGKPKSFGFVCFKHPESVSYAIALLNGIRLYGRPINVSGPS   93 (95)
T ss_dssp             GGEEEEECCCTTCCHHHHHHHHGGGSCEEEEEEEECTTSCEEEEEEEEESSTHHHHHHHHHHTTCEETTEECEEECCC
T ss_pred             CCEEEEECCCCCCCHHHHHHHHHhcCCEEEEEEEECCCCCCceEEEEEECCHHHHHHHHHHhCCCEECCCEEEEEEcC
Confidence            47999999999999999999999999999999997643  2469999999999999996 599999999999998653

>2cq0_A Eukaryotic translation initiation factor 3 subunit 4; RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1

Probab=99.64  E-value=2.1e-15  Score=113.98  Aligned_cols=78  Identities=18%  Similarity=0.222  Sum_probs=69.8

Q ss_pred             CCcEEEEeCCCCCCCHHHHHHHhccCCCceEEEEeecCC---cCceEEEEecCHHHHHHHH-hcCCCeecCeeEEEEecC
Q 026156            4 GGYVAEVVGLSPNATEKDIHEFFSHCGDPVHVEIIRSGE---CGGTAYVTFSNAYALETAV-LLSGATIVDQPVCIIRWG   79 (242)
Q Consensus         4 ~~~tV~VsNLs~~~TE~dLrefFs~~G~I~~V~l~~~~~---~~~~AfV~F~~~~aA~tAl-~Lng~~l~g~~I~V~~a~   79 (242)
                      ..++|||+|||+.+++++|+++|+.||+|.+|.|+.+..   ..++|||+|.++++|..|+ .|||..|.|+.|.|..+.
T Consensus        14 ~~~~l~V~nlp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a~   93 (103)
T 2cq0_A           14 DNATIRVTNLSEDTRETDLQELFRPFGSISRIYLAKDKTTGQSKGFAFISFHRREDAARAIAGVSGFGYDHLILNVEWAK   93 (103)
T ss_dssp             SSEEEEEESCCTTCCHHHHHTTSTTTCCEEEEEEEECSSSCSEEEEEEEEESSHHHHHHHHHHTTTCEETTEECEEEESS
T ss_pred             CCCEEEEeCCCCCCCHHHHHHHHHhCCCeEEEEEeecCCCCceeeEEEEEECCHHHHHHHHHHcCCCeeCCcEEEEEECC
Confidence            358999999999999999999999999999999997743   2469999999999999996 599999999999999775


Q ss_pred             CC
Q 026156           80 EY   81 (242)
Q Consensus        80 ~~   81 (242)
                      +.
T Consensus        94 ~~   95 (103)
T 2cq0_A           94 PS   95 (103)
T ss_dssp             CC
T ss_pred             CC
Confidence            43

>2dh8_A DAZ-associated protein 1; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.63  E-value=8.1e-16  Score=116.59  Aligned_cols=79  Identities=18%  Similarity=0.197  Sum_probs=70.2

Q ss_pred             CCcEEEEeCCCCCCCHHHHHHHhccCCCceEEEEeecCC---cCceEEEEecCHHHHHHHHhcCCCeecCeeEEEEecCC
Q 026156            4 GGYVAEVVGLSPNATEKDIHEFFSHCGDPVHVEIIRSGE---CGGTAYVTFSNAYALETAVLLSGATIVDQPVCIIRWGE   80 (242)
Q Consensus         4 ~~~tV~VsNLs~~~TE~dLrefFs~~G~I~~V~l~~~~~---~~~~AfV~F~~~~aA~tAl~Lng~~l~g~~I~V~~a~~   80 (242)
                      ..++|||+|||+.+++++|+++|+.||+|.+|.|+.+..   ..++|||+|.++++|+.|+..||..|.|+.|.|..+.+
T Consensus        15 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~v~i~~~~~~g~~~g~afV~f~~~~~a~~a~~~~~~~~~g~~l~V~~a~~   94 (105)
T 2dh8_A           15 EIGKLFVGGLDWSTTQETLRSYFSQYGEVVDCVIMKDKTTNQSRGFGFVKFKDPNCVGTVLASRPHTLDGRNIDPKPCTP   94 (105)
T ss_dssp             SSSEECCBSCCTTCCHHHHHHHHHTTSCEEEEEEEECSSSCCEEEEEEEEESSTTHHHHHHHHCSEEETTEEEBCCCSCC
T ss_pred             CCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeeCCCCCCcceEEEEEECCHHHHHHHHHhCCCeECCEEEEEEEccC
Confidence            347999999999999999999999999999999998743   23699999999999999976699999999999987754


Q ss_pred             CC
Q 026156           81 YT   82 (242)
Q Consensus        81 ~~   82 (242)
                      ..
T Consensus        95 ~~   96 (105)
T 2dh8_A           95 RG   96 (105)
T ss_dssp             SS
T ss_pred             CC
Confidence            43

>1wez_A HnRNP H', FTP-3, heterogeneous nuclear ribonucleoprotein H'; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.58.7.1

Probab=99.63  E-value=9.8e-16  Score=117.17  Aligned_cols=77  Identities=27%  Similarity=0.288  Sum_probs=68.2

Q ss_pred             CCcEEEEeCCCCCCCHHHHHHHhccCCCceEEEEeecCC--cCceEEEEecCHHHHHHHHhcCCCeecCeeEEEEecCCC
Q 026156            4 GGYVAEVVGLSPNATEKDIHEFFSHCGDPVHVEIIRSGE--CGGTAYVTFSNAYALETAVLLSGATIVDQPVCIIRWGEY   81 (242)
Q Consensus         4 ~~~tV~VsNLs~~~TE~dLrefFs~~G~I~~V~l~~~~~--~~~~AfV~F~~~~aA~tAl~Lng~~l~g~~I~V~~a~~~   81 (242)
                      ..++|||+|||+.+||++|++||+.|| |.+|.|+.+..  ..++|||+|.++++|+.|+.+|+..|+|+.|.|.++...
T Consensus        14 ~~~~l~V~nLp~~~te~~l~~~F~~~G-~~~v~i~~d~~g~~~G~afV~F~~~~~a~~Al~~~~~~~~gr~i~V~~~~~~   92 (102)
T 1wez_A           14 TGHCVHMRGLPYRATENDIYNFFSPLN-PMRVHIEIGPDGRVTGEADVEFATHEDAVAAMAKDKANMQHRYVELFLNSTA   92 (102)
T ss_dssp             SSCEEEEESCCTTCCHHHHHHSSCSCC-CSEEEEEESSSSCEEEEEEEECSSSHHHHHHHTTSSCCSSSSCCEEEEECCC
T ss_pred             CCCEEEEeCCCCCCCHHHHHHHHHHcC-ceEEEEEECCCCCEeeEEEEEECCHHHHHHHHHhCCCeECCcEEEEEECCCC
Confidence            347999999999999999999999999 55999987642  246999999999999999989999999999999987544

>2dgo_A Cytotoxic granule-associated RNA binding protein 1; RRM domain, structural genomics, NPPSFA; NMR {Mus musculus} PDB: 2rne_A 2dh7_A

Probab=99.63  E-value=5.8e-15  Score=113.57  Aligned_cols=81  Identities=20%  Similarity=0.277  Sum_probs=71.8

Q ss_pred             CCcEEEEeCCCCCCCHHHHHHHhccCCCceEEEEeecCC---cCceEEEEecCHHHHHHHH-hcCCCeecCeeEEEEecC
Q 026156            4 GGYVAEVVGLSPNATEKDIHEFFSHCGDPVHVEIIRSGE---CGGTAYVTFSNAYALETAV-LLSGATIVDQPVCIIRWG   79 (242)
Q Consensus         4 ~~~tV~VsNLs~~~TE~dLrefFs~~G~I~~V~l~~~~~---~~~~AfV~F~~~~aA~tAl-~Lng~~l~g~~I~V~~a~   79 (242)
                      ..++|||+|||+.+++++|+++|+.||.|.+|.|..+..   ..++|||+|.++++|+.|+ .|||..|.|+.|.|..+.
T Consensus        14 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a~   93 (115)
T 2dgo_A           14 NHFHVFVGDLSPEITTEDIKAAFAPFGRISDARVVKDMATGKSKGYGFVSFFNKWDAENAIQQMGGQWLGGRQIRTNWAT   93 (115)
T ss_dssp             TCEEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHTTTCEETTEECEEEESS
T ss_pred             CCcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEEcCCCCCcceEEEEEECCHHHHHHHHHHhCCCEECCEEEEEEEcc
Confidence            457999999999999999999999999999999998743   2469999999999999996 699999999999999886


Q ss_pred             CCCCC
Q 026156           80 EYTDE   84 (242)
Q Consensus        80 ~~~~~   84 (242)
                      +.+..
T Consensus        94 ~~~~~   98 (115)
T 2dgo_A           94 RKPPA   98 (115)
T ss_dssp             CCCCC
T ss_pred             CCCCC
Confidence            55443

>2e5h_A Zinc finger CCHC-type and RNA-binding motif- containing protein 1; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.63  E-value=1.6e-15  Score=112.47  Aligned_cols=76  Identities=17%  Similarity=0.267  Sum_probs=68.6

Q ss_pred             CCCcEEEEeCCCCCCCHHHHHHHhccCCCceEEEEeecCC---cCceEEEEecCHHHHHHHH-hcCCCeecCeeEEEEec
Q 026156            3 AGGYVAEVVGLSPNATEKDIHEFFSHCGDPVHVEIIRSGE---CGGTAYVTFSNAYALETAV-LLSGATIVDQPVCIIRW   78 (242)
Q Consensus         3 ~~~~tV~VsNLs~~~TE~dLrefFs~~G~I~~V~l~~~~~---~~~~AfV~F~~~~aA~tAl-~Lng~~l~g~~I~V~~a   78 (242)
                      +..++|||+|||+.+++++|+++|+.||+|.+|.+..+..   ..++|||+|.++++|+.|+ .|||..|.|+.|.|..+
T Consensus        14 ~~~~~l~V~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a   93 (94)
T 2e5h_A           14 PSKSTVYVSNLPFSLTNNDLYRIFSKYGKVVKVTIMKDKDTRKSKGVAFILFLDKDSAQNCTRAINNKQLFGRVIKASIA   93 (94)
T ss_dssp             CCTTSEEEESCCTTSCHHHHHHHTTTTSCEEEEEECCCSSSCCCTTCEEEEESCHHHHHHHHHHTTTEEETTEEEEEEEC
T ss_pred             CCCCEEEEECCCCCCCHHHHHHHHHhcCCeEEEEEEeCCCCCCcccEEEEEECCHHHHHHHHHHcCCCeeCCcEEEEEec
Confidence            3457999999999999999999999999999999997643   3469999999999999996 79999999999999864

>2d9p_A Polyadenylate-binding protein 3; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.63  E-value=1.8e-15  Score=114.24  Aligned_cols=79  Identities=18%  Similarity=0.255  Sum_probs=70.3

Q ss_pred             CCcEEEEeCCCCCCCHHHHHHHhccCCCceEEEEeecCC-cCceEEEEecCHHHHHHHH-hcCCCeecCeeEEEEecCCC
Q 026156            4 GGYVAEVVGLSPNATEKDIHEFFSHCGDPVHVEIIRSGE-CGGTAYVTFSNAYALETAV-LLSGATIVDQPVCIIRWGEY   81 (242)
Q Consensus         4 ~~~tV~VsNLs~~~TE~dLrefFs~~G~I~~V~l~~~~~-~~~~AfV~F~~~~aA~tAl-~Lng~~l~g~~I~V~~a~~~   81 (242)
                      ..++|||+|||+.+|+++|+++|+.||.|.+|.|..+.+ ..++|||+|.++++|..|+ .|||..|.|+.|.|..+.+.
T Consensus        14 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~a~~~   93 (103)
T 2d9p_A           14 QVVNLYVKNLDDGIDDERLRKAFSPFGTITSAKVMMEGGRSKGFGFVCFSSPEEATKAVTEMNGRIVATKPLYVALAQRK   93 (103)
T ss_dssp             SCCCEEEECCCTTCCHHHHHHTTTTTSCEEEEEEEECSSSEEEEEEEEESSHHHHHHHHHHHTTCBSSSSBCEEEECSSC
T ss_pred             CCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEcCCCCcCEEEEEEECCHHHHHHHHHHhCCCEeCCcEEEEEEeccc
Confidence            347999999999999999999999999999999998733 2469999999999999995 69999999999999987654


Q ss_pred             C
Q 026156           82 T   82 (242)
Q Consensus        82 ~   82 (242)
                      .
T Consensus        94 ~   94 (103)
T 2d9p_A           94 E   94 (103)
T ss_dssp             C
T ss_pred             c
Confidence            3

>2rs2_A Musashi-1, RNA-binding protein musashi homolog 1; protein-RNA complex, RRM, RBD, RNA binding protein- complex; NMR {Mus musculus}

Probab=99.63  E-value=1.9e-15  Score=116.43  Aligned_cols=78  Identities=18%  Similarity=0.242  Sum_probs=68.2

Q ss_pred             CCCcEEEEeCCCCCCCHHHHHHHhccCCCceEEEEeecCC---cCceEEEEecCHHHHHHHHhcCCCeecCeeEEEEecC
Q 026156            3 AGGYVAEVVGLSPNATEKDIHEFFSHCGDPVHVEIIRSGE---CGGTAYVTFSNAYALETAVLLSGATIVDQPVCIIRWG   79 (242)
Q Consensus         3 ~~~~tV~VsNLs~~~TE~dLrefFs~~G~I~~V~l~~~~~---~~~~AfV~F~~~~aA~tAl~Lng~~l~g~~I~V~~a~   79 (242)
                      ...++|||+|||+.+|+++|+++|+.||.|.+|.+..+..   ..++|||+|.++++|+.|+..+|..|+|+.|.|..+.
T Consensus        23 ~~~~~lfV~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~~tg~~kg~afV~f~~~~~A~~Ai~~~~~~l~g~~l~V~~a~  102 (109)
T 2rs2_A           23 SSGCKMFIGGLSWQTTQEGLREYFGQFGEVKECLVMRDPLTKRSRGFGFVTFMDQAGVDKVLAQSRHELDSKTIDPKVAF  102 (109)
T ss_dssp             ---CCEEEESCCTTCCHHHHHHHHTTTSCEEEEEECCCTTTCCCTTCEEEEESSHHHHHHHHHSSCEEETTEEEEEEECC
T ss_pred             CCCCEEEEeCCCCCCCHHHHHHHHHccCCeEEEEEEECCCCCCcCcEEEEEECCHHHHHHHHHHCCCcCCCEEEEEEEcc
Confidence            4558999999999999999999999999999999998743   3579999999999999998777899999999999765


Q ss_pred             C
Q 026156           80 E   80 (242)
Q Consensus        80 ~   80 (242)
                      +
T Consensus       103 ~  103 (109)
T 2rs2_A          103 P  103 (109)
T ss_dssp             C
T ss_pred             C
Confidence            3

>3lqv_A PRE-mRNA branch site protein P14; cysless mutant, PRE-mRNA splicing, adenine, mRNA processing, nucleus, phosphoprotein, RNA-binding; HET: ADE; 2.38A {Homo sapiens} SCOP: d.58.7.1 PDB: 2f9d_A 2f9j_A 2fho_B

Probab=99.63  E-value=1.1e-15  Score=117.71  Aligned_cols=76  Identities=20%  Similarity=0.373  Sum_probs=70.2

Q ss_pred             CCcEEEEeCCCCCCCHHHHHHHhccCCCceEEEEeecCCcCceEEEEecCHHHHHHHH-hcCCCeecCeeEEEEecC
Q 026156            4 GGYVAEVVGLSPNATEKDIHEFFSHCGDPVHVEIIRSGECGGTAYVTFSNAYALETAV-LLSGATIVDQPVCIIRWG   79 (242)
Q Consensus         4 ~~~tV~VsNLs~~~TE~dLrefFs~~G~I~~V~l~~~~~~~~~AfV~F~~~~aA~tAl-~Lng~~l~g~~I~V~~a~   79 (242)
                      ..++|||+|||+.+++++|+++|+.||.|.+|.+..++.+.++|||+|.++++|..|+ .|||..|+|+.|.|..+.
T Consensus         7 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~v~i~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a~   83 (115)
T 3lqv_A            7 VNRILYIRNLPYKITAEEMYDIFGKYGPIRQIRVGNTPETRGTAYVVYEDIFDAKNAVDHLSGFNVSNRYLVVLYYN   83 (115)
T ss_dssp             CCSEEEEESCCTTCCHHHHHHHHHTTSCEEEEEEECSTTTTTCEEEEESSHHHHHHHHHHHTTCBSSSCBCEEEECC
T ss_pred             CCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeeCCCCCcEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEEec
Confidence            3579999999999999999999999999999999987776789999999999999996 599999999999998764

>1x4b_A Heterogeneous nuclear ribonucleoproteins A2/B1; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1

Probab=99.63  E-value=3e-15  Score=115.55  Aligned_cols=77  Identities=21%  Similarity=0.249  Sum_probs=69.6

Q ss_pred             cEEEEeCCCCCCCHHHHHHHhccCCCceEEEEeecCC---cCceEEEEecCHHHHHHHHhcCCCeecCeeEEEEecCCCC
Q 026156            6 YVAEVVGLSPNATEKDIHEFFSHCGDPVHVEIIRSGE---CGGTAYVTFSNAYALETAVLLSGATIVDQPVCIIRWGEYT   82 (242)
Q Consensus         6 ~tV~VsNLs~~~TE~dLrefFs~~G~I~~V~l~~~~~---~~~~AfV~F~~~~aA~tAl~Lng~~l~g~~I~V~~a~~~~   82 (242)
                      ++|||+|||+.+++++|+++|+.||.|.+|.|+.+..   ..++|||+|.++++|+.|+..||..|+|+.|.|..+.+..
T Consensus        28 ~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~Ai~~~~~~~~g~~l~V~~a~~~~  107 (116)
T 1x4b_A           28 RKLFIGGLSFETTEESLRNYYEQWGKLTDCVVMRDPASKRSRGFGFVTFSSMAEVDAAMAARPHSIDGRVVEPKRAVARE  107 (116)
T ss_dssp             TEEEEECCTTCCCHHHHHHHHTSSCCCSEEEEECCTTTSSCCSEEEEECSSHHHHHHHHTSCSEEETTEEEEEECCSSCC
T ss_pred             CEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEECCCCCCcCceEEEEeCCHHHHHHHHHhCCcEECCEEEEEEECCCCc
Confidence            7899999999999999999999999999999998743   3469999999999999998779999999999999775443

>2dnn_A RNA-binding protein 12; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.63  E-value=8.5e-16  Score=119.65  Aligned_cols=74  Identities=18%  Similarity=0.212  Sum_probs=67.6

Q ss_pred             CcEEEEeCCCCCCCHHHHHHHhccCCCceEEEEeecCC--cCceEEEEecCHHHHHHHHhcCCCeecCeeEEEEecC
Q 026156            5 GYVAEVVGLSPNATEKDIHEFFSHCGDPVHVEIIRSGE--CGGTAYVTFSNAYALETAVLLSGATIVDQPVCIIRWG   79 (242)
Q Consensus         5 ~~tV~VsNLs~~~TE~dLrefFs~~G~I~~V~l~~~~~--~~~~AfV~F~~~~aA~tAl~Lng~~l~g~~I~V~~a~   79 (242)
                      .++|||+|||+++|+++|++||+.| .|.+|.|+.+..  ..++|||+|.++++|+.|+.+||..|+|+.|.|.++.
T Consensus        16 ~~~v~V~nLp~~~te~dl~~~F~~~-~v~~v~i~~d~~g~~~G~afV~F~~~~~a~~Al~~~~~~~~gr~i~V~~a~   91 (109)
T 2dnn_A           16 DLYVSVHGMPFSAMENDVRDFFHGL-RVDAVHLLKDHVGRNNGNGLVKFLSPQDTFEALKRNRMLMIQRYVEVSPAT   91 (109)
T ss_dssp             HHEEEEECCCSSCCHHHHHHHTTTS-CCCEEEECCCTTCCCCSEEEEECSSHHHHHHHHHTTTEEETTEEEEEEECC
T ss_pred             CCEEEEeCCCCCCCHHHHHHHhccC-CeeEEEEEECCCCCCCeEEEEEECCHHHHHHHHhcCCCeECCeEEEEEECC
Confidence            4689999999999999999999999 899999997643  4579999999999999999999999999999998764

>2cpz_A CUG triplet repeat RNA-binding protein 1; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 2rq4_A 2rqc_A

Probab=99.62  E-value=2.5e-15  Score=115.79  Aligned_cols=78  Identities=14%  Similarity=0.203  Sum_probs=70.0

Q ss_pred             CCcEEEEeCCCCCCCHHHHHHHhccCCCceEEEEeecCC---cCceEEEEecCHHHHHHHH-hcCCCeecCeeEEEEecC
Q 026156            4 GGYVAEVVGLSPNATEKDIHEFFSHCGDPVHVEIIRSGE---CGGTAYVTFSNAYALETAV-LLSGATIVDQPVCIIRWG   79 (242)
Q Consensus         4 ~~~tV~VsNLs~~~TE~dLrefFs~~G~I~~V~l~~~~~---~~~~AfV~F~~~~aA~tAl-~Lng~~l~g~~I~V~~a~   79 (242)
                      ..++|||+|||+.+++++|+++|+.||.|.+|.|+.+..   ..++|||+|.++++|+.|+ .|||..|.|+.|.|..+.
T Consensus        24 ~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a~  103 (115)
T 2cpz_A           24 EGANLFIYHLPQEFGDQDLLQMFMPFGNVVSAKVFIDKQTNLSKCFGFVSYDNPVSAQAAIQSMNGFQIGMKRLKVQLKR  103 (115)
T ss_dssp             TTCCEEEESCCSSCCHHHHHHHHGGGSCCSEEEEEECSSSCSEEEEEEEECSSHHHHHHHHHHHTTCEETTEECEEECCC
T ss_pred             CCcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECCCCCCcCccEEEEECCHHHHHHHHHHcCCCEECCEEEEEEEcC
Confidence            347999999999999999999999999999999998753   2369999999999999996 899999999999999765


Q ss_pred             CC
Q 026156           80 EY   81 (242)
Q Consensus        80 ~~   81 (242)
                      +.
T Consensus       104 ~~  105 (115)
T 2cpz_A          104 SK  105 (115)
T ss_dssp             CS
T ss_pred             CC
Confidence            43

>2x1f_A MRNA 3'-END-processing protein RNA15; transcription-RNA complex, mRNA processing; 1.60A {Saccharomyces cerevisiae} PDB: 2x1b_A 2x1a_A 2km8_B

Probab=99.62  E-value=2.1e-15  Score=112.73  Aligned_cols=76  Identities=17%  Similarity=0.225  Sum_probs=69.3

Q ss_pred             CcEEEEeCCCCCCCHHHHHHHhccCCCceEEEEeecCC---cCceEEEEecCHHHHHHHH-hcCCCeecCeeEEEEecCC
Q 026156            5 GYVAEVVGLSPNATEKDIHEFFSHCGDPVHVEIIRSGE---CGGTAYVTFSNAYALETAV-LLSGATIVDQPVCIIRWGE   80 (242)
Q Consensus         5 ~~tV~VsNLs~~~TE~dLrefFs~~G~I~~V~l~~~~~---~~~~AfV~F~~~~aA~tAl-~Lng~~l~g~~I~V~~a~~   80 (242)
                      .++|||+|||+.+++++|+++|+.||.|.+|.+..+..   ..++|||+|.++++|..|+ .|||..|+|+.|.|..+.+
T Consensus         2 ~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a~~   81 (96)
T 2x1f_A            2 SRVVYLGSIPYDQTEEQILDLCSNVGPVINLKMMFDPQTGRSKGYAFIEFRDLESSASAVRNLNGYQLGSRFLKCGYSSN   81 (96)
T ss_dssp             CSEEEEESCCTTCCHHHHHHHHHTTSCEEEEECCBCTTTCCBCSEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECSC
T ss_pred             CcEEEEECCCCCCCHHHHHHHHHhcCCEEEEEEEeCCCCCccceEEEEEECCHHHHHHHHHHhCCCeECCeEEEEEEcCC
Confidence            37999999999999999999999999999999997743   3579999999999999995 8999999999999997754

>1p27_B RNA-binding protein 8A; nuclear protein, mRNA splicing; 2.00A {Homo sapiens} SCOP: d.58.7.1

Probab=99.62  E-value=1.2e-15  Score=115.71  Aligned_cols=77  Identities=23%  Similarity=0.374  Sum_probs=69.5

Q ss_pred             CCcEEEEeCCCCCCCHHHHHHHhccCCCceEEEEeecCC---cCceEEEEecCHHHHHHHH-hcCCCeecCeeEEEEecC
Q 026156            4 GGYVAEVVGLSPNATEKDIHEFFSHCGDPVHVEIIRSGE---CGGTAYVTFSNAYALETAV-LLSGATIVDQPVCIIRWG   79 (242)
Q Consensus         4 ~~~tV~VsNLs~~~TE~dLrefFs~~G~I~~V~l~~~~~---~~~~AfV~F~~~~aA~tAl-~Lng~~l~g~~I~V~~a~   79 (242)
                      ..++|||+|||+.+++++|+++|+.||.|.+|.+..+..   ..++|||+|.++++|+.|+ .|||..|+|+.|.|..+.
T Consensus        22 ~~~~l~V~nlp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a~  101 (106)
T 1p27_B           22 EGWILFVTGVHEEATEEDIHDKFAEYGEIKNIHLNLDRRTGYLKGYTLVEYETYKEAQAAMEGLNGQDLMGQPISVDWCF  101 (106)
T ss_dssp             TBEEEEEECCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTSSEEEEEEEEESCHHHHHHHHHHHTTCBSSSSBCEEEESE
T ss_pred             CCCEEEEeCCCCCCCHHHHHHHHhccCCeEEEEEEecCCCCceeeEEEEEECCHHHHHHHHHHhcCCEECCcEEEEEeec
Confidence            357899999999999999999999999999999998744   2479999999999999996 699999999999999775


Q ss_pred             C
Q 026156           80 E   80 (242)
Q Consensus        80 ~   80 (242)
                      +
T Consensus       102 ~  102 (106)
T 1p27_B          102 V  102 (106)
T ss_dssp             E
T ss_pred             C
Confidence            4

>1wg5_A Heterogeneous nuclear ribonucleoprotein H; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.58.7.1

Probab=99.62  E-value=1.9e-15  Score=115.22  Aligned_cols=77  Identities=18%  Similarity=0.194  Sum_probs=68.4

Q ss_pred             CCcEEEEeCCCCCCCHHHHHHHhccCCCceE-EEEeecC--CcCceEEEEecCHHHHHHHHhcCCCeecCeeEEEEecCC
Q 026156            4 GGYVAEVVGLSPNATEKDIHEFFSHCGDPVH-VEIIRSG--ECGGTAYVTFSNAYALETAVLLSGATIVDQPVCIIRWGE   80 (242)
Q Consensus         4 ~~~tV~VsNLs~~~TE~dLrefFs~~G~I~~-V~l~~~~--~~~~~AfV~F~~~~aA~tAl~Lng~~l~g~~I~V~~a~~   80 (242)
                      ..++|||+|||+.+|+++|++||+.||.|.+ |.|+.+.  ...++|||+|.++++|+.|+..||..|+|+.|.|.++..
T Consensus        14 ~~~~l~V~nLp~~~te~~l~~~F~~~G~v~~~v~i~~~~~g~~~G~afV~F~~~~~a~~A~~~~~~~~~gr~i~v~~~~~   93 (104)
T 1wg5_A           14 NDGFVRLRGLPFGCSKEEIVQFFSGLEIVPNGMTLPVDFQGRSTGEAFVQFASQEIAEKALKKHKERIGHRYIEIFKSSR   93 (104)
T ss_dssp             CCCEEEEESCCTTCCHHHHHHHTTTCCEEEEEEECCBCSSSCBCSEEEEEESSHHHHHHHHTTTTCCSSSSCCEEEEECT
T ss_pred             CCCEEEEeCCCCCCCHHHHHHHHHhcCCcceeEEEEECCCCCcceEEEEEECCHHHHHHHHHhCcchhCCcEEEEEECCH
Confidence            3579999999999999999999999999998 8887652  235799999999999999987799999999999987753

>2cqc_A Arginine/serine-rich splicing factor 10; RNA recognition motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1

Probab=99.62  E-value=1.6e-15  Score=112.45  Aligned_cols=75  Identities=27%  Similarity=0.341  Sum_probs=68.1

Q ss_pred             CcEEEEeCCCCCCCHHHHHHHhccCCCceEEEEeecCC---cCceEEEEecCHHHHHHHH-hcCCCeecCeeEEEEecC
Q 026156            5 GYVAEVVGLSPNATEKDIHEFFSHCGDPVHVEIIRSGE---CGGTAYVTFSNAYALETAV-LLSGATIVDQPVCIIRWG   79 (242)
Q Consensus         5 ~~tV~VsNLs~~~TE~dLrefFs~~G~I~~V~l~~~~~---~~~~AfV~F~~~~aA~tAl-~Lng~~l~g~~I~V~~a~   79 (242)
                      .++|||+|||+.+++++|+++|+.||+|.+|.+..+..   ..++|||+|.++++|+.|+ .|||..|.|+.|.|..+.
T Consensus        15 ~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a~   93 (95)
T 2cqc_A           15 NCCLGVFGLSLYTTERDLREVFSKYGPIADVSIVYDQQSRRSRGFAFVYFENVDDAKEAKERANGMELDGRRIRVSGPS   93 (95)
T ss_dssp             GGCEEEESCCSSCCHHHHHHHHHTTSCEEEEEEEECSSSSSEEEEEEEEESSHHHHHHHHHHHTTEEETTEEEEEECCS
T ss_pred             CCEEEEECCCCCCCHHHHHHHHHhcCCeeEEEEEEcCCCCCcccEEEEEECCHHHHHHHHHHhCCCEECCEEEEEEecC
Confidence            47899999999999999999999999999999998754   2369999999999999995 599999999999998654

>2dnq_A RNA-binding protein 4B; RRM domain,RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.62  E-value=3.6e-15  Score=110.17  Aligned_cols=75  Identities=20%  Similarity=0.254  Sum_probs=68.3

Q ss_pred             CCCcEEEEeCCCCCCCHHHHHHHhccCCCceEEEEeecCCcCceEEEEecCHHHHHHHH-hcCCCeecCeeEEEEecCCC
Q 026156            3 AGGYVAEVVGLSPNATEKDIHEFFSHCGDPVHVEIIRSGECGGTAYVTFSNAYALETAV-LLSGATIVDQPVCIIRWGEY   81 (242)
Q Consensus         3 ~~~~tV~VsNLs~~~TE~dLrefFs~~G~I~~V~l~~~~~~~~~AfV~F~~~~aA~tAl-~Lng~~l~g~~I~V~~a~~~   81 (242)
                      +..++|||+|||+.+++++|+++|+.||+|.+|.+.     .++|||+|.++++|+.|+ .|||..|.|+.|.|..+.+.
T Consensus         6 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~~~-----~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a~~~   80 (90)
T 2dnq_A            6 SGMVKLFIGNLPREATEQEIRSLFEQYGKVLECDII-----KNYGFVHIEDKTAAEDAIRNLHHYKLHGVNINVEASKNK   80 (90)
T ss_dssp             SCCEEEEEESCCSSCCHHHHHHHHHTSSCEEEEEEE-----TTEEEEEESSHHHHHHHHHHHTTCBCSSCBCEEECSSCC
T ss_pred             CCCeEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEE-----CCEEEEEECCHHHHHHHHHHhcCCccCCcEEEEEECCCC
Confidence            345899999999999999999999999999999998     469999999999999995 89999999999999977554


Q ss_pred             C
Q 026156           82 T   82 (242)
Q Consensus        82 ~   82 (242)
                      .
T Consensus        81 ~   81 (90)
T 2dnq_A           81 S   81 (90)
T ss_dssp             C
T ss_pred             C
Confidence            3

>2dgt_A RNA-binding protein 30; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.62  E-value=4.4e-15  Score=110.12  Aligned_cols=73  Identities=16%  Similarity=0.242  Sum_probs=67.3

Q ss_pred             CCcEEEEeCCCCCCCHHHHHHHhccCCCceEEEEeecCCcCceEEEEecCHHHHHHHH-hcCCCeecCeeEEEEecCCC
Q 026156            4 GGYVAEVVGLSPNATEKDIHEFFSHCGDPVHVEIIRSGECGGTAYVTFSNAYALETAV-LLSGATIVDQPVCIIRWGEY   81 (242)
Q Consensus         4 ~~~tV~VsNLs~~~TE~dLrefFs~~G~I~~V~l~~~~~~~~~AfV~F~~~~aA~tAl-~Lng~~l~g~~I~V~~a~~~   81 (242)
                      ..++|||+|||+.+++++|+++|+.||+|.+|.+.+     ++|||+|.++++|..|+ .|||..|.|+.|.|..+.+.
T Consensus         9 ~~~~l~V~nLp~~~t~~~l~~~F~~~G~v~~v~~~~-----~~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a~~~   82 (92)
T 2dgt_A            9 ASTKLHVGNISPTCTNQELRAKFEEYGPVIECDIVK-----DYAFVHMERAEDAVEAIRGLDNTEFQGKRMHVQLSTSR   82 (92)
T ss_dssp             SSEEEEEESCCSSCCHHHHHHHHHTTSCCCEEEECS-----SEEEEEESCHHHHHHHHHHHTTEEETTEEEEEEESSCC
T ss_pred             CCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEC-----CEEEEEECCHHHHHHHHHHhCCCeeCCcEEEEEEccCC
Confidence            458999999999999999999999999999999984     39999999999999995 79999999999999987544

>2dgw_A Probable RNA-binding protein 19; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.62  E-value=3.5e-15  Score=110.26  Aligned_cols=77  Identities=23%  Similarity=0.312  Sum_probs=68.9

Q ss_pred             CCcEEEEeCCCCCCCHHHHHHHhccCCCceEEEEeecCC--cCceEEEEecCHHHHHHHHhcCCCeecCeeEEEEecCCC
Q 026156            4 GGYVAEVVGLSPNATEKDIHEFFSHCGDPVHVEIIRSGE--CGGTAYVTFSNAYALETAVLLSGATIVDQPVCIIRWGEY   81 (242)
Q Consensus         4 ~~~tV~VsNLs~~~TE~dLrefFs~~G~I~~V~l~~~~~--~~~~AfV~F~~~~aA~tAl~Lng~~l~g~~I~V~~a~~~   81 (242)
                      ..++|||+|||+.+++++|++||+.| .|.+|.|+.+..  ..++|||+|.++++|..|+.|||..|+|+.|.|..+.+.
T Consensus         9 ~~~~l~v~nLp~~~t~~~l~~~F~~~-~i~~v~i~~~~~g~~~g~afV~f~~~~~a~~A~~~~g~~~~gr~i~v~~a~~~   87 (91)
T 2dgw_A            9 TCHTVKLRGAPFNVTEKNVMEFLAPL-KPVAIRIVRNAHGNKTGYIFVDFSNEEEVKQALKCNREYMGGRYIEVFREKSG   87 (91)
T ss_dssp             CCCEEEEECCCSSCCHHHHHHHHTTS-CCSEEEEEECTTSCEEEEEEEECSSHHHHHHHHHSCSEEETTEEEEEEEESSC
T ss_pred             CccEEEEECCCCCCCHHHHHHHHhhC-CceEEEEEECCCCCCceEEEEEECCHHHHHHHHHhCCceeCCcEEEEEECCcC
Confidence            35799999999999999999999999 999999998732  246999999999999999779999999999999987543

>2cq4_A RNA binding motif protein 23; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1

Probab=99.62  E-value=1.8e-15  Score=116.51  Aligned_cols=74  Identities=24%  Similarity=0.409  Sum_probs=68.6

Q ss_pred             cEEEEeCCCCCCCHHHHHHHhccCCCceEEEEeecCC---cCceEEEEecCHHHHHHHHhcCCCeecCeeEEEEecC
Q 026156            6 YVAEVVGLSPNATEKDIHEFFSHCGDPVHVEIIRSGE---CGGTAYVTFSNAYALETAVLLSGATIVDQPVCIIRWG   79 (242)
Q Consensus         6 ~tV~VsNLs~~~TE~dLrefFs~~G~I~~V~l~~~~~---~~~~AfV~F~~~~aA~tAl~Lng~~l~g~~I~V~~a~   79 (242)
                      ++|||+|||+.+++++|+++|+.||.|.+|.|+.+..   ..++|||+|.++++|+.|+.|||..|.|+.|.|..+.
T Consensus        26 ~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~l~g~~~~g~~l~V~~a~  102 (114)
T 2cq4_A           26 RTVFCMQLAARIRPRDLEDFFSAVGKVRDVRIISDRNSRRSKGIAYVEFCEIQSVPLAIGLTGQRLLGVPIIVQASQ  102 (114)
T ss_dssp             TEEEEESCCTTCCHHHHHHHHTTTSCEEEEEECCSCCSSSCCCCEEEEESCGGGHHHHHHHTTEEETTEEEEEEEHH
T ss_pred             CEEEEeCCCCCCCHHHHHHHHHhCCCEeEEEEEecCCCCccCcEEEEEeCcHHHHHHHHHcCCCEeCCeEEEEEecC
Confidence            6899999999999999999999999999999997653   3469999999999999999999999999999999764

>2err_A Ataxin-2-binding protein 1; protein-RNA complex, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1

Probab=99.62  E-value=2.3e-15  Score=115.83  Aligned_cols=77  Identities=21%  Similarity=0.288  Sum_probs=69.8

Q ss_pred             CCcEEEEeCCCCCCCHHHHHHHhccCCCceEEEEeecCC-cCceEEEEecCHHHHHHHH-hcCCCeecCeeEEEEecCC
Q 026156            4 GGYVAEVVGLSPNATEKDIHEFFSHCGDPVHVEIIRSGE-CGGTAYVTFSNAYALETAV-LLSGATIVDQPVCIIRWGE   80 (242)
Q Consensus         4 ~~~tV~VsNLs~~~TE~dLrefFs~~G~I~~V~l~~~~~-~~~~AfV~F~~~~aA~tAl-~Lng~~l~g~~I~V~~a~~   80 (242)
                      ..++|||+||++.+++++|+++|+.||+|.+|.+..+.+ ..++|||+|.++++|+.|+ .|||..|+|+.|.|..+.+
T Consensus        28 ~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~~kg~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a~~  106 (109)
T 2err_A           28 QPKRLHVSNIPFRFRDPDLRQMFGQFGKILDVEIIFNERGSKGFGFVTFENSADADRAREKLHGTVVEGRKIEVNNATA  106 (109)
T ss_dssp             CCCEEEEESCCTTCCHHHHHHHGGGTCCCSCEEECCBTTBCTTEEEEECCCSHHHHHHHHHHTTCEETTEECEEEECCC
T ss_pred             CCCEEEEECCCCcCCHHHHHHHHHhcCCEEEEEEEECCCCCceEEEEEECCHHHHHHHHHHcCCCEECCEEEEEEECCC
Confidence            458999999999999999999999999999999997754 3579999999999999995 5999999999999997654

>2db1_A Heterogeneous nuclear ribonucleoprotein F; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}

Probab=99.62  E-value=1.5e-15  Score=118.75  Aligned_cols=75  Identities=21%  Similarity=0.360  Sum_probs=68.5

Q ss_pred             CcEEEEeCCCCCCCHHHHHHHhccCCC---ceEEEEeecCC--cCceEEEEecCHHHHHHHHhcCCCeecCeeEEEEecC
Q 026156            5 GYVAEVVGLSPNATEKDIHEFFSHCGD---PVHVEIIRSGE--CGGTAYVTFSNAYALETAVLLSGATIVDQPVCIIRWG   79 (242)
Q Consensus         5 ~~tV~VsNLs~~~TE~dLrefFs~~G~---I~~V~l~~~~~--~~~~AfV~F~~~~aA~tAl~Lng~~l~g~~I~V~~a~   79 (242)
                      .++|||+|||+++|+++|++||+.||.   |.+|.|+.+..  ..++|||+|.++++|+.|+.|||..|+|+.|.|..+.
T Consensus        17 ~~~l~V~nLp~~~te~~l~~~F~~~G~~~~v~~v~i~~~~~g~~~G~afV~F~~~~~a~~Al~~~g~~~~gr~i~V~~a~   96 (118)
T 2db1_A           17 GYVVKLRGLPWSCSIEDVQNFLSDCTIHDGVAGVHFIYTREGRQSGEAFVELESEDDVKLALKKDRESMGHRYIEVFKSH   96 (118)
T ss_dssp             CCEEEEESCCTTCCHHHHHHHTTTSCBTTGGGGEEEEECSSSCEEEEEEEEBSSHHHHHHHGGGTTEEETTEEEEEEEEC
T ss_pred             CcEEEEeCCCCCCCHHHHHHHHHHcCCccCceeEEEEECCCCCCCeEEEEEECCHHHHHHHHhcCCCeECCeEEEEEECC
Confidence            478999999999999999999999999   89999997643  3469999999999999998899999999999998764

>2jwn_A Embryonic polyadenylate-binding protein 2-B; epabp2, poly(A) binding, structural genomics, protein structure initiative, PSI-2; NMR {Xenopus laevis}

Probab=99.61  E-value=3.2e-15  Score=116.49  Aligned_cols=76  Identities=18%  Similarity=0.304  Sum_probs=69.4

Q ss_pred             CcEEEEeCCCCCCCHHHHHHHhccCCCceEEEEeecCC---cCceEEEEecCHHHHHHHHhcCCCeecCeeEEEEecCC
Q 026156            5 GYVAEVVGLSPNATEKDIHEFFSHCGDPVHVEIIRSGE---CGGTAYVTFSNAYALETAVLLSGATIVDQPVCIIRWGE   80 (242)
Q Consensus         5 ~~tV~VsNLs~~~TE~dLrefFs~~G~I~~V~l~~~~~---~~~~AfV~F~~~~aA~tAl~Lng~~l~g~~I~V~~a~~   80 (242)
                      .++|||+|||+.+|+++|+++|+.||.|.+|.+..+..   ..++|||+|.++++|+.|+.|||..|+|+.|.|..+.+
T Consensus        36 ~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~l~g~~~~g~~l~V~~a~~  114 (124)
T 2jwn_A           36 KRSVYVGNVDYGSTAQDLEAHFSSCGSINRITILCDKFSGHPKGYAYIEFAERNSVDAAVAMDETVFRGRTIKVLPKRT  114 (124)
T ss_dssp             HTEEEEEEECTTCCHHHHHHHHHTTSCEEEEEEEEECTTSSCEEEEEEEESSHHHHHHHHTTTTCEETTEECEEEESSC
T ss_pred             CCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEecCCCCCcccEEEEEECCHHHHHHHHhcCCCeECCeEEEEEECCC
Confidence            37999999999999999999999999999999997632   34699999999999999999999999999999997753

>2jrs_A RNA-binding protein 39; RNA binding motif of RBM39_human (caper), RRM2 domain, solution structure, structural genomics, PSI-2; NMR {Homo sapiens}

Probab=99.61  E-value=2.6e-15  Score=115.62  Aligned_cols=78  Identities=24%  Similarity=0.338  Sum_probs=70.0

Q ss_pred             CCCcEEEEeCCCCCCCHHHHHHHhccCCCceEEEEeecCC---cCceEEEEecCHHHHHHHH-hcCCCeecCeeEEEEec
Q 026156            3 AGGYVAEVVGLSPNATEKDIHEFFSHCGDPVHVEIIRSGE---CGGTAYVTFSNAYALETAV-LLSGATIVDQPVCIIRW   78 (242)
Q Consensus         3 ~~~~tV~VsNLs~~~TE~dLrefFs~~G~I~~V~l~~~~~---~~~~AfV~F~~~~aA~tAl-~Lng~~l~g~~I~V~~a   78 (242)
                      +..++|||+|||+.+++++|+++|+.||+|.+|.+..+..   ..++|||+|.++++|..|+ .|||..|+|+.|.|..+
T Consensus        24 ~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~F~~~~~A~~Ai~~l~g~~i~g~~l~V~~a  103 (108)
T 2jrs_A           24 AGPMRLYVGSLHFNITEDMLRGIFEPFGRIESIQLMMDSETGRSKGYGFITFSDSECAKKALEQLNGFELAGRPMKVGHV  103 (108)
T ss_dssp             SSCEEEEEECCCSSCCHHHHHHHHTTTSCEEEEEEEEETTTTEEEEEEEEEESCHHHHHHHHHHHTTCCSSSSCCEEECS
T ss_pred             CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEEcCCCCccceEEEEEECCHHHHHHHHHHcCCCEECCEEEEEEEc
Confidence            3458999999999999999999999999999999997743   2469999999999999996 69999999999999976


Q ss_pred             CC
Q 026156           79 GE   80 (242)
Q Consensus        79 ~~   80 (242)
                      .+
T Consensus       104 ~~  105 (108)
T 2jrs_A          104 TE  105 (108)
T ss_dssp             CS
T ss_pred             cc
Confidence            54

>1oo0_B CG8781-PA, drosophila Y14; RNA recognition motif, splicing, protein complex, EXON junct complex, signaling protein; 1.85A {Drosophila melanogaster} SCOP: d.58.7.1 PDB: 2hyi_B* 2j0s_D* 2xb2_D*

Probab=99.61  E-value=2.4e-15  Score=114.91  Aligned_cols=77  Identities=22%  Similarity=0.281  Sum_probs=69.3

Q ss_pred             CCcEEEEeCCCCCCCHHHHHHHhccCCCceEEEEeecCC---cCceEEEEecCHHHHHHHH-hcCCCeecCeeEEEEecC
Q 026156            4 GGYVAEVVGLSPNATEKDIHEFFSHCGDPVHVEIIRSGE---CGGTAYVTFSNAYALETAV-LLSGATIVDQPVCIIRWG   79 (242)
Q Consensus         4 ~~~tV~VsNLs~~~TE~dLrefFs~~G~I~~V~l~~~~~---~~~~AfV~F~~~~aA~tAl-~Lng~~l~g~~I~V~~a~   79 (242)
                      ..++|||+|||+.+++++|+++|+.||.|.+|.+..+..   ..++|||+|.++++|..|+ .|||..|+|+.|.|..+.
T Consensus        25 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a~  104 (110)
T 1oo0_B           25 EGWILFVTSIHEEAQEDEIQEKFCDYGEIKNIHLNLDRRTGFSKGYALVEYETHKQALAAKEALNGAEIMGQTIQVDWCF  104 (110)
T ss_dssp             TBEEEEEESCCTTCCHHHHHHHHGGGSCEEEEECCBCTTTSSBCSEEEEEESSHHHHHHHHHHHTTCEETTEECEEEESE
T ss_pred             CCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHcCCCEECCcEEEEEEcc
Confidence            457899999999999999999999999999999987643   3479999999999999996 599999999999999764


Q ss_pred             C
Q 026156           80 E   80 (242)
Q Consensus        80 ~   80 (242)
                      +
T Consensus       105 ~  105 (110)
T 1oo0_B          105 V  105 (110)
T ss_dssp             E
T ss_pred             c
Confidence            3

>2do4_A Squamous cell carcinoma antigen recognized by T- cells 3; RRM domaim, RDB, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.61  E-value=3.4e-15  Score=112.22  Aligned_cols=77  Identities=19%  Similarity=0.263  Sum_probs=69.3

Q ss_pred             CCcEEEEeCCCCCCCHHHHHHHhccCCCceEEEEeecCC--cCceEEEEecCHHHHHHHH-hcCCCeecCeeEEEEecCC
Q 026156            4 GGYVAEVVGLSPNATEKDIHEFFSHCGDPVHVEIIRSGE--CGGTAYVTFSNAYALETAV-LLSGATIVDQPVCIIRWGE   80 (242)
Q Consensus         4 ~~~tV~VsNLs~~~TE~dLrefFs~~G~I~~V~l~~~~~--~~~~AfV~F~~~~aA~tAl-~Lng~~l~g~~I~V~~a~~   80 (242)
                      ..++|||+|||+.+++++|+++|+.||.|.+|.+..+..  ..++|||+|.++++|+.|+ .|||..|.|+.|.|..+.+
T Consensus        16 ~~~~l~v~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~~   95 (100)
T 2do4_A           16 EKHKLFISGLPFSCTKEELEEICKAHGTVKDLRLVTNRAGKPKGLAYVEYENESQASQAVMKMDGMTIKENIIKVAISNS   95 (100)
T ss_dssp             CCSCEEEESCCTTCCHHHHHHHHTTTSCEEEEEEEECTTSCEEEEEEEEESSHHHHHHHHHHHTTEESSSCEEEEEECCC
T ss_pred             CCCEEEEeCCCCCCCHHHHHHHHHhCCCeEEEEEEECCCCCEEeEEEEEECCHHHHHHHHHHhCCCEECCEEEEEEECCC
Confidence            347999999999999999999999999999999998752  2369999999999999995 8999999999999997643

>1iqt_A AUF1, heterogeneous nuclear ribonucleoprotein D0; RNA-binding protein, hnRNP, telomere, DNA-binding protein, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 1wtb_A 1x0f_A

Probab=99.61  E-value=3.9e-16  Score=111.15  Aligned_cols=71  Identities=21%  Similarity=0.277  Sum_probs=65.3

Q ss_pred             EEEEeCCCCCCCHHHHHHHhccCCCceEEEEeecCC---cCceEEEEecCHHHHHHHHhcCCCeecCeeEEEEe
Q 026156            7 VAEVVGLSPNATEKDIHEFFSHCGDPVHVEIIRSGE---CGGTAYVTFSNAYALETAVLLSGATIVDQPVCIIR   77 (242)
Q Consensus         7 tV~VsNLs~~~TE~dLrefFs~~G~I~~V~l~~~~~---~~~~AfV~F~~~~aA~tAl~Lng~~l~g~~I~V~~   77 (242)
                      +|||+|||+.+++++|+++|+.||+|.+|.+..+..   ..++|||+|.++++|+.|+.++|..|.|+.|.|..
T Consensus         1 ~l~v~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~Ai~~~~~~~~g~~l~v~~   74 (75)
T 1iqt_A            1 KIFVGGLSPDTPEEKIREYFGGFGEVESIELPMDNKTNKRRGFCFITFKEEEPVKKIMEKKYHNVGLSKCEIKV   74 (75)
T ss_dssp             CEEESCCCSSCCHHHHHHHHHHHSCCSEECCCCSCCCSSSCCCEEEECSSSHHHHHHHTTSSCCBTTBCCCEEE
T ss_pred             CEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCCcCCEEEEEECCHHHHHHHHHhCCCeECCEEEEEEE
Confidence            689999999999999999999999999999987643   34799999999999999988899999999999875

>1x4c_A Splicing factor, arginine/serine-rich 1; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1

Probab=99.61  E-value=4e-15  Score=113.96  Aligned_cols=74  Identities=22%  Similarity=0.300  Sum_probs=68.3

Q ss_pred             CCcEEEEeCCCCCCCHHHHHHHhccCCCceEEEEeecCCcCceEEEEecCHHHHHHHH-hcCCCeecC-----eeEEEEe
Q 026156            4 GGYVAEVVGLSPNATEKDIHEFFSHCGDPVHVEIIRSGECGGTAYVTFSNAYALETAV-LLSGATIVD-----QPVCIIR   77 (242)
Q Consensus         4 ~~~tV~VsNLs~~~TE~dLrefFs~~G~I~~V~l~~~~~~~~~AfV~F~~~~aA~tAl-~Lng~~l~g-----~~I~V~~   77 (242)
                      ..++|||+|||+.+++++|+++|+.||+|.+|.|..+    ++|||+|.++++|+.|+ .|||..|.|     +.|.|..
T Consensus        14 ~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~i~~~----g~afV~f~~~~~a~~Ai~~l~g~~~~g~~~~~~~i~V~~   89 (108)
T 1x4c_A           14 SENRVVVSGLPPSGSWQDLKDHMREAGDVCYADVYRD----GTGVVEFVRKEDMTYAVRKLDNTKFRSHEGETAYIRVKV   89 (108)
T ss_dssp             CCCEEEEESCCSSCCHHHHHHHHGGGSCEEEEEEETT----TEEEEEESSHHHHHHHHHHSSSEEEECTTSCEEEEEEEE
T ss_pred             CCCEEEEeCCCCCCCHHHHHHHHHhcCCEeEEEEecC----CEEEEEECCHHHHHHHHHHHCcCCccCCcCcceEEEEEe
Confidence            3579999999999999999999999999999999876    79999999999999995 599999999     9999998


Q ss_pred             cCCC
Q 026156           78 WGEY   81 (242)
Q Consensus        78 a~~~   81 (242)
                      +.+.
T Consensus        90 a~~~   93 (108)
T 1x4c_A           90 DGPR   93 (108)
T ss_dssp             SSCC
T ss_pred             CCCC
Confidence            7653

>2dnp_A RNA-binding protein 14; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.61  E-value=2.8e-15  Score=110.78  Aligned_cols=74  Identities=14%  Similarity=0.267  Sum_probs=67.5

Q ss_pred             CCCcEEEEeCCCCCCCHHHHHHHhccCCCceEEEEeecCCcCceEEEEecCHHHHHHHH-hcCCCeecCeeEEEEecCCC
Q 026156            3 AGGYVAEVVGLSPNATEKDIHEFFSHCGDPVHVEIIRSGECGGTAYVTFSNAYALETAV-LLSGATIVDQPVCIIRWGEY   81 (242)
Q Consensus         3 ~~~~tV~VsNLs~~~TE~dLrefFs~~G~I~~V~l~~~~~~~~~AfV~F~~~~aA~tAl-~Lng~~l~g~~I~V~~a~~~   81 (242)
                      +..++|||+|||+.+|+++|+++|+.||.|.+|.+.+     ++|||+|.++++|+.|+ .|||..|.|+.|.|..+.+.
T Consensus         7 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~~~~~~-----~~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~~~   81 (90)
T 2dnp_A            7 GNTWKIFVGNVSAACTSQELRSLFERRGRVIECDVVK-----DYAFVHMEKEADAKAAIAQLNGKEVKGKRINVELSTKG   81 (90)
T ss_dssp             CCSCCEEEESCCTTCCHHHHHHHHHHHSCEEEEEECS-----SCEEEEESCHHHHHHHHHHHTTCEETTEECEEEESCCC
T ss_pred             CCCCEEEEeCCCCCCCHHHHHHHHHcCCCEEEEEEEC-----CEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEECCCC
Confidence            3457999999999999999999999999999999984     39999999999999995 69999999999999987554

>1x5u_A Splicing factor 3B subunit 4 (spliceosome associated protein 49) (SAP 49) (SF3B50)...; structure genomics,RRM domain,splicing factor 3B; NMR {Homo sapiens} SCOP: d.58.7.1

Probab=99.61  E-value=4e-15  Score=112.57  Aligned_cols=78  Identities=17%  Similarity=0.260  Sum_probs=69.8

Q ss_pred             CCcEEEEeCCCCCCCHHHHHHHhccCCCceEEEEeecCC---cCceEEEEecCHHHHHHHH-hcCCCeecCeeEEEEecC
Q 026156            4 GGYVAEVVGLSPNATEKDIHEFFSHCGDPVHVEIIRSGE---CGGTAYVTFSNAYALETAV-LLSGATIVDQPVCIIRWG   79 (242)
Q Consensus         4 ~~~tV~VsNLs~~~TE~dLrefFs~~G~I~~V~l~~~~~---~~~~AfV~F~~~~aA~tAl-~Lng~~l~g~~I~V~~a~   79 (242)
                      ..++|||+|||+.+++++|+++|+.||.|.+|.+..+..   ..++|||+|.++++|+.|+ .|||..|.|+.|.|..+.
T Consensus        14 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~   93 (105)
T 1x5u_A           14 QDATVYVGGLDEKVSEPLLWELFLQAGPVVNTHMPKDRVTGQHQGYGFVEFLSEEDADYAIKIMDMIKLYGKPIRVNKAS   93 (105)
T ss_dssp             TTTEEEEECCCTTCCHHHHHHHHHTTSCEEEEECCBCSSSCSBCSCEEEEESSHHHHHHHHHHSSSCBCSSCBCEEEETT
T ss_pred             CCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCcCCcEEEEEECCHHHHHHHHHHhCCCeECCeEEEEEECC
Confidence            357999999999999999999999999999999997643   3469999999999999996 599999999999999875


Q ss_pred             CC
Q 026156           80 EY   81 (242)
Q Consensus        80 ~~   81 (242)
                      +.
T Consensus        94 ~~   95 (105)
T 1x5u_A           94 AH   95 (105)
T ss_dssp             TT
T ss_pred             CC
Confidence            43

>2do0_A HnRNP M, heterogeneous nuclear ribonucleoprotein M; RNA recognition motif, RRM, RNA binding domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.61  E-value=9.4e-15  Score=112.04  Aligned_cols=76  Identities=24%  Similarity=0.355  Sum_probs=68.7

Q ss_pred             CcEEEEeCCCCCCCHHHHHHHhccCCCceEEEEeecCC--cCceEEEEecCHHHHHHHH-hcCCCeecCeeEEEEecCC
Q 026156            5 GYVAEVVGLSPNATEKDIHEFFSHCGDPVHVEIIRSGE--CGGTAYVTFSNAYALETAV-LLSGATIVDQPVCIIRWGE   80 (242)
Q Consensus         5 ~~tV~VsNLs~~~TE~dLrefFs~~G~I~~V~l~~~~~--~~~~AfV~F~~~~aA~tAl-~Lng~~l~g~~I~V~~a~~   80 (242)
                      .++|||+|||+.+++++|+++|+.||.|.+|.|..+..  ..++|||+|.++++|+.|+ .|||..|.|+.|.|..+..
T Consensus        15 ~~~l~V~nlp~~~~~~~l~~~f~~~G~i~~~~i~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~~   93 (114)
T 2do0_A           15 GSTVFVANLDYKVGWKKLKEVFSMAGVVVRADILEDKDGKSRGIGTVTFEQSIEAVQAISMFNGQLLFDRPMHVKMDER   93 (114)
T ss_dssp             CSCEEEESCCTTCCHHHHHHHHTTTSCEEEEEEEECTTCSEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECSC
T ss_pred             CCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECCCCCeeeEEEEEECCHHHHHHHHHHhCCCEeCCCEEEEEEccc
Confidence            47999999999999999999999999999999997643  2369999999999999996 5999999999999997654

>1x4g_A Nucleolysin TIAR; structural genomics, RRM domain, TIA-1 related protein, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1

Probab=99.61  E-value=3.7e-15  Score=114.01  Aligned_cols=75  Identities=20%  Similarity=0.266  Sum_probs=69.0

Q ss_pred             CCcEEEEeCCCCCCCHHHHHHHhccCCCceEEEEeecCCcCceEEEEecCHHHHHHHH-hcCCCeecCeeEEEEecCCC
Q 026156            4 GGYVAEVVGLSPNATEKDIHEFFSHCGDPVHVEIIRSGECGGTAYVTFSNAYALETAV-LLSGATIVDQPVCIIRWGEY   81 (242)
Q Consensus         4 ~~~tV~VsNLs~~~TE~dLrefFs~~G~I~~V~l~~~~~~~~~AfV~F~~~~aA~tAl-~Lng~~l~g~~I~V~~a~~~   81 (242)
                      ..++|||+|||+.+++++|+++|+.||.|.+|.|..+   .++|||+|.++++|..|+ .|||..|.|+.|.|..+.+.
T Consensus        24 ~~~~l~V~nl~~~~t~~~l~~~F~~~G~i~~v~i~~~---~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~~~   99 (109)
T 1x4g_A           24 KNCTVYCGGIASGLTDQLMRQTFSPFGQIMEIRVFPE---KGYSFVRFSTHESAAHAIVSVNGTTIEGHVVKCYWGKES   99 (109)
T ss_dssp             SCCEEEEECCSSCCCHHHHHHHHHHHSCEEEEEEETT---TTEEEEEESSHHHHHHHHHHHTTCEETTEECEEECCCCC
T ss_pred             CCcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeCC---CCEEEEEECCHHHHHHHHHHcCCCEECCcEEEEEecCCC
Confidence            4579999999999999999999999999999999976   579999999999999995 89999999999999976543

>2fy1_A RNA-binding motif protein, Y chromosome, family 1 member A1; RNA binding protein, structure, protein-RNA complex, RNA stem-loop, structural protein/RNA complex; NMR {Homo sapiens}

Probab=99.61  E-value=5.7e-15  Score=115.08  Aligned_cols=79  Identities=19%  Similarity=0.249  Sum_probs=70.8

Q ss_pred             CcEEEEeCCCCCCCHHHHHHHhccCCCceEEEEeecC--CcCceEEEEecCHHHHHHHH-hcCCCeecCeeEEEEecCCC
Q 026156            5 GYVAEVVGLSPNATEKDIHEFFSHCGDPVHVEIIRSG--ECGGTAYVTFSNAYALETAV-LLSGATIVDQPVCIIRWGEY   81 (242)
Q Consensus         5 ~~tV~VsNLs~~~TE~dLrefFs~~G~I~~V~l~~~~--~~~~~AfV~F~~~~aA~tAl-~Lng~~l~g~~I~V~~a~~~   81 (242)
                      .++|||+|||+.+++++|+++|+.||.|.+|.|..+.  ...++|||+|.+.++|+.|+ .|||..|.|+.|.|..+.+.
T Consensus         7 ~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~g~~~g~afV~F~~~~~A~~Ai~~l~g~~~~g~~l~V~~a~~~   86 (116)
T 2fy1_A            7 PGKLFIGGLNRETNEKMLKAVFGKHGPISEVLLIKDRTSKSRGFAFITFENPADAKNAAKDMNGKSLHGKAIKVEQAKKP   86 (116)
T ss_dssp             CCEEEEECCTTTCCHHHHHHHHHTSSCCSEEEEECSTTTTCCCEEEEECSSHHHHHHHHHHCSSCBCSSSBCEEEECCCS
T ss_pred             CCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEECCCCCcccEEEEEECCHHHHHHHHHHhCCCEECCEEEEEEECCCC
Confidence            3799999999999999999999999999999999764  23479999999999999995 69999999999999988654


Q ss_pred             CC
Q 026156           82 TD   83 (242)
Q Consensus        82 ~~   83 (242)
                      ..
T Consensus        87 ~~   88 (116)
T 2fy1_A           87 SF   88 (116)
T ss_dssp             SC
T ss_pred             CC
Confidence            43

>2cph_A RNA binding motif protein 19; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1

Probab=99.61  E-value=3.8e-15  Score=112.84  Aligned_cols=78  Identities=17%  Similarity=0.206  Sum_probs=69.4

Q ss_pred             CCcEEEEeCCCCCCCHHHHHHHhccCCCceEEEEeec-C--C-cCceEEEEecCHHHHHHHH-hc-CCCeecCeeEEEEe
Q 026156            4 GGYVAEVVGLSPNATEKDIHEFFSHCGDPVHVEIIRS-G--E-CGGTAYVTFSNAYALETAV-LL-SGATIVDQPVCIIR   77 (242)
Q Consensus         4 ~~~tV~VsNLs~~~TE~dLrefFs~~G~I~~V~l~~~-~--~-~~~~AfV~F~~~~aA~tAl-~L-ng~~l~g~~I~V~~   77 (242)
                      ..++|||+|||+.+++++|+++|+.||.|.+|.|+.+ .  + ..++|||+|.++++|..|+ .| ||..|.|+.|.|..
T Consensus        14 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~~~~~~~g~~l~v~~   93 (107)
T 2cph_A           14 TTSKILVRNIPFQANQREIRELFSTFGELKTVRLPKKMTGTGAHRGFGFVDFITKQDAKKAFNALCHSTHLYGRRLVLEW   93 (107)
T ss_dssp             CCCCEEEESCCTTCCHHHHHHHHHTTSCEEEEECCCCCSSSCSSCSEEEEEESSHHHHHHHHHHHHTCCBSSSCBCEEEE
T ss_pred             CCCEEEEeCCCCcCCHHHHHHHHHccCCeEEEEEecCCCCCCCcCceEEEEECCHHHHHHHHHHhccCCeECCCEEEEEe
Confidence            3479999999999999999999999999999999876 2  2 3479999999999999995 78 99999999999998


Q ss_pred             cCCC
Q 026156           78 WGEY   81 (242)
Q Consensus        78 a~~~   81 (242)
                      +.+.
T Consensus        94 a~~~   97 (107)
T 2cph_A           94 ADSE   97 (107)
T ss_dssp             CCCC
T ss_pred             CCCC
Confidence            7543

>2jvr_A Nucleolar protein 3; RNA recognition motif, nucleus, phosphorylation, ribonucleoprotein, ribosome biogenesis, RNA-binding; NMR {Saccharomyces cerevisiae} PDB: 2osr_A

Probab=99.60  E-value=1.9e-15  Score=118.18  Aligned_cols=76  Identities=13%  Similarity=0.191  Sum_probs=68.3

Q ss_pred             CCcEEEEeCCCCCCCHHHHHHHhccCC-CceEEEEeecCCcCceEEEEecCHHHHHHHH-hcCCCeecCeeEEEEecCC
Q 026156            4 GGYVAEVVGLSPNATEKDIHEFFSHCG-DPVHVEIIRSGECGGTAYVTFSNAYALETAV-LLSGATIVDQPVCIIRWGE   80 (242)
Q Consensus         4 ~~~tV~VsNLs~~~TE~dLrefFs~~G-~I~~V~l~~~~~~~~~AfV~F~~~~aA~tAl-~Lng~~l~g~~I~V~~a~~   80 (242)
                      ..++|||+|||+.+++++|+++|+.|| +|..+.+... ...+||||+|.++++|+.|+ .|||..|+|+.|.|..+..
T Consensus        27 ~~~~l~VgnLp~~~te~dL~~~F~~~G~~v~~v~i~~~-~~rGfaFV~F~~~e~A~~Ai~~lng~~l~Gr~i~V~~a~~  104 (111)
T 2jvr_A           27 KRYRITMKNLPEGCSWQDLKDLARENSLETTFSSVNTR-DFDGTGALEFPSEEILVEALERLNNIEFRGSVITVERDDN  104 (111)
T ss_dssp             CCEEEEEECSSCCCCHHHHHHHHHHHTCCCSEEECSSC-SSSCCEEEEESSHHHHHHHHHHTTTEEETTEEEEEEESCC
T ss_pred             CCCEEEEECCCCCCCHHHHHHHHHHhCCeeEEEEEEcC-CCCCEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEECCC
Confidence            457999999999999999999999999 9999999643 34579999999999999996 7999999999999998754

>2cpj_A Non-POU domain-containing octamer-binding protein; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1

Probab=99.60  E-value=4.7e-15  Score=111.37  Aligned_cols=75  Identities=17%  Similarity=0.202  Sum_probs=68.6

Q ss_pred             CCCcEEEEeCCCCCCCHHHHHHHhccCCCceEEEEeecCCcCceEEEEecCHHHHHHHH-hcCCCeecCeeEEEEecCC
Q 026156            3 AGGYVAEVVGLSPNATEKDIHEFFSHCGDPVHVEIIRSGECGGTAYVTFSNAYALETAV-LLSGATIVDQPVCIIRWGE   80 (242)
Q Consensus         3 ~~~~tV~VsNLs~~~TE~dLrefFs~~G~I~~V~l~~~~~~~~~AfV~F~~~~aA~tAl-~Lng~~l~g~~I~V~~a~~   80 (242)
                      +..++|||+|||+.+++++|+++|+.||+|.+|.+.++   .++|||+|.++++|..|+ .|||..|.|+.|.|..+.+
T Consensus        13 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~~~~~---kg~afV~f~~~~~a~~a~~~l~g~~~~g~~l~v~~a~~   88 (99)
T 2cpj_A           13 TQRSRLFVGNLPPDITEEEMRKLFEKYGKAGEVFIHKD---KGFGFIRLETRTLAEIAKVELDNMPLRGKQLRVRFACH   88 (99)
T ss_dssp             CCTTEEEEESCCTTCCHHHHHHHTSTTCCCSEEEEETT---TTEEEEECSSSHHHHHHHHHHTTCCBTTBCCEEEESSC
T ss_pred             CCCCEEEEeCCCCCCCHHHHHHHHhhcCCeEEEEEecC---CCEEEEEECCHHHHHHHHHHhCCCEeCCceEEEEEcCC
Confidence            34579999999999999999999999999999999865   469999999999999995 8999999999999998754

>2lkz_A RNA-binding protein 5; RRM; NMR {Homo sapiens}

Probab=99.60  E-value=1.6e-15  Score=115.22  Aligned_cols=75  Identities=15%  Similarity=0.176  Sum_probs=66.1

Q ss_pred             cEEEEeCCCCCCCHHHHHHHhccCCC--ceEEEEeecCC---cCceEEEEecCHHHHHHH-HhcCCC----eecCeeEEE
Q 026156            6 YVAEVVGLSPNATEKDIHEFFSHCGD--PVHVEIIRSGE---CGGTAYVTFSNAYALETA-VLLSGA----TIVDQPVCI   75 (242)
Q Consensus         6 ~tV~VsNLs~~~TE~dLrefFs~~G~--I~~V~l~~~~~---~~~~AfV~F~~~~aA~tA-l~Lng~----~l~g~~I~V   75 (242)
                      .||||+|||+.+|+++|+++|+.||.  |.+|++++++.   +.+||||+|.++++|+.| ..|||.    .|+|++|.|
T Consensus        10 ~tlfV~nL~~~~tee~L~~~F~~~G~i~v~~v~i~~d~~tg~srG~aFV~f~~~~~A~~Ai~~lng~~~~~~i~Gr~i~V   89 (95)
T 2lkz_A           10 DTIILRNIAPHTVVDSIMTALSPYASLAVNNIRLIKDKQTQQNRGFAFVQLSSAMDASQLLQILQSLHPPLKIDGKTIGV   89 (95)
T ss_dssp             CEEEEESCCTTCCHHHHHHHSTTTCCCCGGGEECCCCSSSSSCSSEEEEECSSSHHHHHHHHHHHSSSSCEEETTEEEEE
T ss_pred             CEEEEeCCCCcCCHHHHHHHHHhhCCccEEEEEEEecCCCCCCceEeEEEECCHHHHHHHHHHhcCCCCCceECCEEEEE
Confidence            58999999999999999999999995  67999988754   347999999999999999 578987    599999999


Q ss_pred             EecCC
Q 026156           76 IRWGE   80 (242)
Q Consensus        76 ~~a~~   80 (242)
                      ..+.+
T Consensus        90 ~~Aks   94 (95)
T 2lkz_A           90 DFAKS   94 (95)
T ss_dssp             EECCC
T ss_pred             EEccC
Confidence            97653

>3ulh_A THO complex subunit 4; nuclear protein, RNA binding, structural genomi center for structural genomics, JCSG, protein structure INI PSI-biology; 2.54A {Homo sapiens} PDB: 1no8_A

Probab=99.60  E-value=4.5e-15  Score=112.65  Aligned_cols=76  Identities=22%  Similarity=0.231  Sum_probs=68.3

Q ss_pred             CCcEEEEeCCCCCCCHHHHHHHhccCCCceEEEEeecCC--cCceEEEEecCHHHHHHHH-hcCCCeecCeeEEEEecC
Q 026156            4 GGYVAEVVGLSPNATEKDIHEFFSHCGDPVHVEIIRSGE--CGGTAYVTFSNAYALETAV-LLSGATIVDQPVCIIRWG   79 (242)
Q Consensus         4 ~~~tV~VsNLs~~~TE~dLrefFs~~G~I~~V~l~~~~~--~~~~AfV~F~~~~aA~tAl-~Lng~~l~g~~I~V~~a~   79 (242)
                      ..++|||+|||+.+++++|+++|+.||.|.+|.|..+..  ..++|||+|.++++|+.|+ .|||..|.|+.|.|..+.
T Consensus        28 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a~  106 (107)
T 3ulh_A           28 TGGKLLVSNLDFGVSDADIQELFAEFGTLKKAAVHYDRSGRSLGTADVHFERKADALKAMKQYNGVPLDGRPMNIQLVT  106 (107)
T ss_dssp             CSEEEEEESCCTTCCHHHHHHHHHTTSCEEEEEEEECTTSCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEEEC
T ss_pred             CCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECCCCCcceEEEEEECCHHHHHHHHHHhCCCEeCCcEEEEEEeC
Confidence            357999999999999999999999999999999997752  2369999999999999995 599999999999998753

>1sjq_A Polypyrimidine tract-binding protein 1; babbab motif, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1

Probab=99.60  E-value=2.1e-15  Score=117.35  Aligned_cols=74  Identities=16%  Similarity=0.218  Sum_probs=66.2

Q ss_pred             CCcEEEEeCCCCCCCHHHHHHHhccCCCceEEEEeecCCcCceEEEEecCHHHHHHHH-hcC--CCeecCeeEEEEecCC
Q 026156            4 GGYVAEVVGLSPNATEKDIHEFFSHCGDPVHVEIIRSGECGGTAYVTFSNAYALETAV-LLS--GATIVDQPVCIIRWGE   80 (242)
Q Consensus         4 ~~~tV~VsNLs~~~TE~dLrefFs~~G~I~~V~l~~~~~~~~~AfV~F~~~~aA~tAl-~Ln--g~~l~g~~I~V~~a~~   80 (242)
                      ..++|||+|||+.+||++|+++|+.||+|.+|.|+++   .+||||+|+++++|+.|+ .|+  +..|.|++|.|..+.+
T Consensus        15 ~~~~LfV~nLp~~vte~dL~~lF~~fG~V~~v~i~~~---kGfaFVeF~~~~~A~~Ai~~l~~~~~~l~Gr~l~V~~A~~   91 (105)
T 1sjq_A           15 PSRVIHIRKLPIDVTEGEVISLGLPFGKVTNLLMLKG---KNQAFIEMNTEEAANTMVNYYTSVTPVLRGQPIYIQFSNH   91 (105)
T ss_dssp             CCCEEEECSCCTTSCHHHHHHHHHHHCCEEEEEEETT---TTEEEEEESSHHHHHHHHHHHTTSCCEETTEECCBCCCSS
T ss_pred             CCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEcC---CCEEEEEECCHHHHHHHHHHhccCCceECCEEEEEEEcCC
Confidence            3579999999999999999999999999999999975   479999999999999995 465  5899999999987654

>2div_A TRNA selenocysteine associated protein; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.60  E-value=3.9e-15  Score=111.47  Aligned_cols=77  Identities=21%  Similarity=0.229  Sum_probs=68.7

Q ss_pred             CCcEEEEeCCCCCCCHHHHHHHhccCCCce-EEEEeecCC---cCceEEEEecCHHHHHHHH-hcCCCeecCee----EE
Q 026156            4 GGYVAEVVGLSPNATEKDIHEFFSHCGDPV-HVEIIRSGE---CGGTAYVTFSNAYALETAV-LLSGATIVDQP----VC   74 (242)
Q Consensus         4 ~~~tV~VsNLs~~~TE~dLrefFs~~G~I~-~V~l~~~~~---~~~~AfV~F~~~~aA~tAl-~Lng~~l~g~~----I~   74 (242)
                      ..++|||+|||+.+++++|+++|+.||+|. +|.++.+..   ..++|||+|.++++|+.|+ .|||..|.|+.    |.
T Consensus         8 ~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~~~~~l~   87 (99)
T 2div_A            8 MAASLWMGDLEPYMDENFISRAFATMGETVMSVKIIRNRLTGIPAGYCFVEFADLATAEKCLHKINGKPLPGATPAKRFK   87 (99)
T ss_dssp             SSSEEEECSCCTTCCHHHHHHHHHHTTCCCCEEEEEECSSSCCEEEEEEEECSCHHHHHHHHHTTTTSEESSCSSCEECC
T ss_pred             CccEEEEeCCCCCCCHHHHHHHHHHhCCcceEEEEeecCCCCCcCCEEEEEeCCHHHHHHHHHHHcCCccCCCCcceeEE
Confidence            347999999999999999999999999999 999998753   2369999999999999996 59999999999    99


Q ss_pred             EEecCC
Q 026156           75 IIRWGE   80 (242)
Q Consensus        75 V~~a~~   80 (242)
                      |..+.+
T Consensus        88 v~~a~~   93 (99)
T 2div_A           88 LNYATY   93 (99)
T ss_dssp             EEETTC
T ss_pred             EeecCC
Confidence            987643

>2cpy_A RNA-binding protein 12; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1

Probab=99.60  E-value=2.4e-15  Score=116.43  Aligned_cols=77  Identities=14%  Similarity=0.123  Sum_probs=69.4

Q ss_pred             CCcEEEEeCCCCCCCHHHHHHHhccCCCc-eEEEEeecCC--cCceEEEEecCHHHHHHHHhcCCCeecCeeEEEEecCC
Q 026156            4 GGYVAEVVGLSPNATEKDIHEFFSHCGDP-VHVEIIRSGE--CGGTAYVTFSNAYALETAVLLSGATIVDQPVCIIRWGE   80 (242)
Q Consensus         4 ~~~tV~VsNLs~~~TE~dLrefFs~~G~I-~~V~l~~~~~--~~~~AfV~F~~~~aA~tAl~Lng~~l~g~~I~V~~a~~   80 (242)
                      ..++|||+|||+.+|+++|++||+.||.| .+|.|+.+..  ..++|||+|.++++|+.|+.+||..|+|+.|.|..+..
T Consensus        14 ~~~~l~V~nLp~~~t~~~l~~~F~~~g~v~~~v~i~~d~~g~~~G~afV~F~~~~~a~~Al~~~~~~~~gr~i~v~~a~~   93 (114)
T 2cpy_A           14 AKVCAHITNIPFSITKMDVLQFLEGIPVDENAVHVLVDNNGQGLGQALVQFKNEDDARKSERLHRKKLNGREAFVHVVTL   93 (114)
T ss_dssp             CCCEEEEESCCTTSCHHHHHHHTTTSCCCSTTEEECCCTTSSCSSCEEEECSSHHHHHHHGGGCSEEETTEEEEEEEECH
T ss_pred             CccEEEEeCcCCcCCHHHHHHHHHhCCCcCCeEEEEECCCCCcceEEEEEECCHHHHHHHHHhCCCccCCeEEEEEECCH
Confidence            35799999999999999999999999999 8999987642  35799999999999999987799999999999998754

>2cqg_A TDP-43, TAR DNA-binding protein-43; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1

Probab=99.60  E-value=7e-15  Score=111.01  Aligned_cols=77  Identities=19%  Similarity=0.189  Sum_probs=68.5

Q ss_pred             CcEEEEeCCCCCCCHHHHHHHhccCCCceEEEEeecCC---cCceEEEEecCHHHHHHHHhcCCCeecCeeEEEEecCCC
Q 026156            5 GYVAEVVGLSPNATEKDIHEFFSHCGDPVHVEIIRSGE---CGGTAYVTFSNAYALETAVLLSGATIVDQPVCIIRWGEY   81 (242)
Q Consensus         5 ~~tV~VsNLs~~~TE~dLrefFs~~G~I~~V~l~~~~~---~~~~AfV~F~~~~aA~tAl~Lng~~l~g~~I~V~~a~~~   81 (242)
                      .++|||+|||+.+++++|+++|+.||.|.+|.|+.+..   ..++|||+|.++++|+.|+. ++..|+|+.|.|..+.+.
T Consensus        15 ~~~l~v~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~-~~~~~~g~~l~v~~a~~~   93 (103)
T 2cqg_A           15 TSDLIVLGLPWKTTEQDLKEYFSTFGEVLMVQVKKDLKTGHSKGFGFVRFTEYETQVKVMS-QRHMIDGRWCDCKLPNSK   93 (103)
T ss_dssp             CCCEEEESCCSSCCHHHHHHHHGGGSCEEEEEEEECSSSCSEEEEEEEEESSHHHHHHHHH-SCEEETTEEEEEECCCTT
T ss_pred             CCEEEEEcCCCcCCHHHHHHHHHhcCCeEEEEEEecCCCCCccceEEEEECCHHHHHHHHH-cCCeeCCeEEEEEecCCC
Confidence            47899999999999999999999999999999998743   24699999999999999977 688999999999977554


Q ss_pred             C
Q 026156           82 T   82 (242)
Q Consensus        82 ~   82 (242)
                      .
T Consensus        94 ~   94 (103)
T 2cqg_A           94 Q   94 (103)
T ss_dssp             C
T ss_pred             C
Confidence            3

>1x4h_A RNA-binding protein 28; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1

Probab=99.60  E-value=5.4e-15  Score=112.71  Aligned_cols=76  Identities=18%  Similarity=0.224  Sum_probs=69.0

Q ss_pred             CcEEEEeCCCCCCCHHHHHHHhccCCCceEEEEeecCC---cCceEEEEecCHHHHHHHH-hcC------CCeecCeeEE
Q 026156            5 GYVAEVVGLSPNATEKDIHEFFSHCGDPVHVEIIRSGE---CGGTAYVTFSNAYALETAV-LLS------GATIVDQPVC   74 (242)
Q Consensus         5 ~~tV~VsNLs~~~TE~dLrefFs~~G~I~~V~l~~~~~---~~~~AfV~F~~~~aA~tAl-~Ln------g~~l~g~~I~   74 (242)
                      .++|||+|||+.+++++|+++|+.||.|.+|.|+.+..   ..++|||+|.++++|..|+ .||      |..|+|+.|.
T Consensus        15 ~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~~~~~~~~~~~~~~g~~l~   94 (111)
T 1x4h_A           15 GKTVFIRNLSFDSEEEALGEVLQQFGDLKYVRVVLHPDTEHSKGCAFAQFMTQEAAQKCLAAASLEAEGGGLKLDGRQLK   94 (111)
T ss_dssp             CCCEEEESCCTTCCHHHHHHHHHTTSCEEEEECCBCSSSCCBCSEEEEEESSHHHHHHHHHHHCTTTTTCCEESSSCEEE
T ss_pred             CCEEEEECCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCCCccEEEEEECCHHHHHHHHHHhccccccCCcEEcCEEEE
Confidence            47899999999999999999999999999999997743   3579999999999999995 788      9999999999


Q ss_pred             EEecCC
Q 026156           75 IIRWGE   80 (242)
Q Consensus        75 V~~a~~   80 (242)
                      |..+.+
T Consensus        95 v~~a~~  100 (111)
T 1x4h_A           95 VDLAVT  100 (111)
T ss_dssp             EECCCC
T ss_pred             EEECCC
Confidence            997654

>2kt5_A RNA and export factor-binding protein 2; chaperone, mRNA processing, mRNA splicing, transport, nucleus, RNA-binding, spliceosome, transport; NMR {Mus musculus}

Probab=99.60  E-value=7.5e-15  Score=114.73  Aligned_cols=79  Identities=23%  Similarity=0.236  Sum_probs=70.2

Q ss_pred             CcEEEEeCCCCCCCHHHHHHHhccCCCceEEEEeecCC--cCceEEEEecCHHHHHHHH-hcCCCeecCeeEEEEecCCC
Q 026156            5 GYVAEVVGLSPNATEKDIHEFFSHCGDPVHVEIIRSGE--CGGTAYVTFSNAYALETAV-LLSGATIVDQPVCIIRWGEY   81 (242)
Q Consensus         5 ~~tV~VsNLs~~~TE~dLrefFs~~G~I~~V~l~~~~~--~~~~AfV~F~~~~aA~tAl-~Lng~~l~g~~I~V~~a~~~   81 (242)
                      .++|||+||++.+++++|+++|+.||.|.+|.+..+..  ..++|||+|.++++|+.|+ .|||..|+|+.|.|..+...
T Consensus        35 ~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~v~i~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a~~~  114 (124)
T 2kt5_A           35 GAKLLVSNLDFGVSDADIQELFAEFGTLKKAAVDYDRSGRSLGTADVHFERRADALKAMKQYKGVPLDGRPMDIQLVASQ  114 (124)
T ss_dssp             CEEEEEESCCSSCCHHHHHHHHHTTSCCSEEEEECCSSSSCCSEEEEEESSHHHHHHHHHHHTTEESSSCEEEEEEECCT
T ss_pred             CCEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEECCCCCEeeEEEEEECCHHHHHHHHHHcCCCEECCcEEEEEEeCCC
Confidence            47999999999999999999999999999999997642  3479999999999999996 59999999999999987654


Q ss_pred             CC
Q 026156           82 TD   83 (242)
Q Consensus        82 ~~   83 (242)
                      ..
T Consensus       115 ~~  116 (124)
T 2kt5_A          115 ID  116 (124)
T ss_dssp             TC
T ss_pred             CC
Confidence            33

>2ki2_A SS-DNA binding protein 12RNP2; HP0827, RRM, SS-DNA binding proteins, RNA binding protein/SS-DNA binding protein complex; NMR {Helicobacter pylori}

Probab=99.60  E-value=4.3e-16  Score=114.83  Aligned_cols=76  Identities=20%  Similarity=0.262  Sum_probs=66.4

Q ss_pred             cEEEEeCCCCCCCHHHHHHHhccCCCceEEEEeecCC---cCceEEEEecCHHHHHHH-HhcCCCeecCeeEEEEecCCC
Q 026156            6 YVAEVVGLSPNATEKDIHEFFSHCGDPVHVEIIRSGE---CGGTAYVTFSNAYALETA-VLLSGATIVDQPVCIIRWGEY   81 (242)
Q Consensus         6 ~tV~VsNLs~~~TE~dLrefFs~~G~I~~V~l~~~~~---~~~~AfV~F~~~~aA~tA-l~Lng~~l~g~~I~V~~a~~~   81 (242)
                      ++|||+|||+.+++++|+++|+.||+|.+|.+.++..   ..++|||+|.+++ |..| ..|||..|+|+.|.|..+.+.
T Consensus         2 ~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~-a~~a~~~l~g~~~~g~~l~V~~a~~~   80 (90)
T 2ki2_A            2 RNIYVGNLVYSATSEQVKELFSQFGKVFNVKLIYDRETKKPKGFGFVEMQEES-VSEAIAKLDNTDFMGRTIRVTEANPK   80 (90)
T ss_dssp             EEEEEEEECTTSSHHHHTTTHHHHTCCSEEEECCCSSSCCCCEEEEEEECTTH-HHHHHHTSCSSCCSSSSCSEEEC---
T ss_pred             cEEEECCCCCCCCHHHHHHHHHhcCCEEEEEEEEcCCCCCcceEEEEEECCHH-HHHHHHHhCCCEECCeEEEEEEcCCC
Confidence            6899999999999999999999999999999997743   3479999999999 9999 579999999999999987654


Q ss_pred             C
Q 026156           82 T   82 (242)
Q Consensus        82 ~   82 (242)
                      .
T Consensus        81 ~   81 (90)
T 2ki2_A           81 K   81 (90)
T ss_dssp             -
T ss_pred             C
Confidence            3

>2j76_E EIF-4B, EIF4B, eukaryotic translation initiation factor 4B; protein biosynthesis, RNA recognition motif, RNA binding domain, RRM, RBD, RNP; NMR {Homo sapiens}

Probab=99.60  E-value=1.1e-15  Score=115.56  Aligned_cols=76  Identities=24%  Similarity=0.287  Sum_probs=67.9

Q ss_pred             CCcEEEEeCCCCCCCHHHHHHHhccCCCceEEEEeecC---C-cCceEEEEecCHHHHHHHHhcCCCeecCeeEEEEecC
Q 026156            4 GGYVAEVVGLSPNATEKDIHEFFSHCGDPVHVEIIRSG---E-CGGTAYVTFSNAYALETAVLLSGATIVDQPVCIIRWG   79 (242)
Q Consensus         4 ~~~tV~VsNLs~~~TE~dLrefFs~~G~I~~V~l~~~~---~-~~~~AfV~F~~~~aA~tAl~Lng~~l~g~~I~V~~a~   79 (242)
                      ..++|||+||++.+++++|+++|+.|| |.+|.|..+.   + ..++|||+|.+.++|..|+.|||..|+|+.|.|..+.
T Consensus        18 ~~~~l~V~nLp~~~t~~~l~~~F~~~G-i~~v~i~~~~~~~g~~~g~afV~f~~~~~a~~Ai~l~g~~~~g~~l~V~~a~   96 (100)
T 2j76_E           18 PPYTAFLGNLPYDVTEESIKEFFRGLN-ISAVRLPREPSNPERLKGFGYAEFEDLDSLLSALSLNEESLGNRRIRVDVAD   96 (100)
T ss_dssp             --CEEEESCCSSCCSSSHHHHHSCSSC-EEEEECSCCTTTTCCCCSCEEEEECCHHHHHHHHHTTTCCBTTBCCCCEECC
T ss_pred             CCcEEEEeCCCCCCCHHHHHHHHHhcC-CeEEEEEecCCcCCccCeEEEEEECCHHHHHHHHhcCCCEECCeEEEEEecc
Confidence            458999999999999999999999999 9999999764   2 3479999999999999999999999999999998764


Q ss_pred             C
Q 026156           80 E   80 (242)
Q Consensus        80 ~   80 (242)
                      +
T Consensus        97 ~   97 (100)
T 2j76_E           97 Q   97 (100)
T ss_dssp             C
T ss_pred             C
Confidence            3

>2dgp_A Bruno-like 4, RNA binding protein; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2dgq_A

Probab=99.60  E-value=4.2e-15  Score=112.63  Aligned_cols=78  Identities=15%  Similarity=0.244  Sum_probs=69.7

Q ss_pred             CCCcEEEEeCCCCCCCHHHHHHHhccCCCceEEEEeecCC---cCceEEEEecCHHHHHHHH-hcCCCee---cCeeEEE
Q 026156            3 AGGYVAEVVGLSPNATEKDIHEFFSHCGDPVHVEIIRSGE---CGGTAYVTFSNAYALETAV-LLSGATI---VDQPVCI   75 (242)
Q Consensus         3 ~~~~tV~VsNLs~~~TE~dLrefFs~~G~I~~V~l~~~~~---~~~~AfV~F~~~~aA~tAl-~Lng~~l---~g~~I~V   75 (242)
                      +..++|||+|||+.+++++|+++|+.||+|.+|.|+.+..   ..++|||+|.++++|..|+ .|||..+   .|+.|.|
T Consensus        11 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~~~~g~~l~v   90 (106)
T 2dgp_A           11 HDAIKLFIGQIPRNLDEKDLKPLFEEFGKIYELTVLKDRFTGMHKGCAFLTYCERESALKAQSALHEQKTLPGMNRPIQV   90 (106)
T ss_dssp             TTCEEEEEESCCTTCCHHHHHHHHHHHSCCCEEECCCCSSSCSCCSEEEEEESSHHHHHHHHHHHTTTCCCTTCSSCCEE
T ss_pred             CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHhcCCcccCCCCceEEE
Confidence            3458999999999999999999999999999999998643   3579999999999999995 6999998   8999999


Q ss_pred             EecCC
Q 026156           76 IRWGE   80 (242)
Q Consensus        76 ~~a~~   80 (242)
                      ..+.+
T Consensus        91 ~~a~~   95 (106)
T 2dgp_A           91 KPADS   95 (106)
T ss_dssp             EECCC
T ss_pred             EECCc
Confidence            97754

>2cqp_A RNA-binding protein 12; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1

Probab=99.59  E-value=2.6e-15  Score=112.29  Aligned_cols=77  Identities=19%  Similarity=0.178  Sum_probs=68.5

Q ss_pred             CCcEEEEeCCCCCCCHHHHHHHhccCCCceEEEEeecCC---cCceEEEEecCHHHHHHHH-hcCCCeecCeeEEEEecC
Q 026156            4 GGYVAEVVGLSPNATEKDIHEFFSHCGDPVHVEIIRSGE---CGGTAYVTFSNAYALETAV-LLSGATIVDQPVCIIRWG   79 (242)
Q Consensus         4 ~~~tV~VsNLs~~~TE~dLrefFs~~G~I~~V~l~~~~~---~~~~AfV~F~~~~aA~tAl-~Lng~~l~g~~I~V~~a~   79 (242)
                      ..++|||+|||+.+++++|+++|+.||.|.++.++.+..   ..++|||+|.++++|+.|+ .|||..|.|+.|.|..+.
T Consensus        14 ~~~~l~v~nLp~~~t~~~l~~~F~~~G~v~~~~~~~~~~~g~~~g~afV~f~~~~~a~~Ai~~l~g~~~~g~~l~V~~a~   93 (98)
T 2cqp_A           14 GPTIIKVQNMPFTVSIDEILDFFYGYQVIPGSVCLKYNEKGMPTGEAMVAFESRDEATAAVIDLNDRPIGSRKVKLVLGS   93 (98)
T ss_dssp             SSEEEEEESCCTTCCHHHHHHHTTTSCCCTTTCEEEECSSSCEEEEEEEEESCHHHHHHHHHHTTTCEETTEECEEEESS
T ss_pred             CCCEEEEeCCCCCCCHHHHHHHHHHcCCccceEEEEECCCCCeeeEEEEEECCHHHHHHHHHHhCCCeeCCeEEEEEEcC
Confidence            457899999999999999999999999999887776543   2479999999999999996 999999999999999765


Q ss_pred             C
Q 026156           80 E   80 (242)
Q Consensus        80 ~   80 (242)
                      +
T Consensus        94 ~   94 (98)
T 2cqp_A           94 G   94 (98)
T ss_dssp             C
T ss_pred             C
Confidence            3

>2dnh_A Bruno-like 5, RNA binding protein; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2dnk_A 2dno_A

Probab=99.59  E-value=5.8e-15  Score=111.65  Aligned_cols=78  Identities=19%  Similarity=0.245  Sum_probs=69.5

Q ss_pred             CCcEEEEeCCCCCCCHHHHHHHhccCCCceEEEEeecCC--cCceEEEEecCHHHHHHHH-hcCCCeecC---eeEEEEe
Q 026156            4 GGYVAEVVGLSPNATEKDIHEFFSHCGDPVHVEIIRSGE--CGGTAYVTFSNAYALETAV-LLSGATIVD---QPVCIIR   77 (242)
Q Consensus         4 ~~~tV~VsNLs~~~TE~dLrefFs~~G~I~~V~l~~~~~--~~~~AfV~F~~~~aA~tAl-~Lng~~l~g---~~I~V~~   77 (242)
                      ..++|||+|||+.+++++|+++|+.||.|.+|.|..+..  ..++|||+|.++++|+.|+ .|||..|.|   +.|.|..
T Consensus        14 ~~~~l~v~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~gg~~~~l~V~~   93 (105)
T 2dnh_A           14 RDRKLFVGMLNKQQSEEDVLRLFQPFGVIDECTVLRGPDGSSKGCAFVKFSSHTEAQAAIHALHGSQTMPGASSSLVVKF   93 (105)
T ss_dssp             CCCEEEEESCCTTCCHHHHHHHHTTTSCEEEEEEEECSSSCEEEEEEEEESSHHHHHHHHHHHSSCCCCTTCSSCCEEEE
T ss_pred             CCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECCCCCcCcEEEEEeCCHHHHHHHHHHHcCCccCCCCCccEEEEE
Confidence            358999999999999999999999999999999997743  2469999999999999995 699999998   9999997


Q ss_pred             cCCC
Q 026156           78 WGEY   81 (242)
Q Consensus        78 a~~~   81 (242)
                      +.+.
T Consensus        94 a~~~   97 (105)
T 2dnh_A           94 ADTD   97 (105)
T ss_dssp             SCSS
T ss_pred             CccC
Confidence            7543

>2khc_A Testis-specific RNP-type RNA binding protein; RRM, RNA recognition motif, bruno; NMR {Drosophila melanogaster}

Probab=99.59  E-value=4.3e-15  Score=114.80  Aligned_cols=75  Identities=15%  Similarity=0.230  Sum_probs=67.8

Q ss_pred             CCcEEEEeCCCCCCCHHHHHHHhccCCCceEEEEeecCC---cCceEEEEecCHHHHHHHH-hcCCCeecCeeEEEEec
Q 026156            4 GGYVAEVVGLSPNATEKDIHEFFSHCGDPVHVEIIRSGE---CGGTAYVTFSNAYALETAV-LLSGATIVDQPVCIIRW   78 (242)
Q Consensus         4 ~~~tV~VsNLs~~~TE~dLrefFs~~G~I~~V~l~~~~~---~~~~AfV~F~~~~aA~tAl-~Lng~~l~g~~I~V~~a   78 (242)
                      ..++|||+|||+.+++++|+++|+.||+|.+|.|..+..   ..++|||+|.++++|+.|+ .|||..|+|+.|+|..+
T Consensus        39 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~a  117 (118)
T 2khc_A           39 EGCNLFIYHLPQEFTDTDLASTFLPFGNVISAKVFIDKQTSLSKCFGFVSFDNPDSAQVAIKAMNGFQVGTKRLKVQLK  117 (118)
T ss_dssp             CSEEEEEECSCTTCCHHHHHHHTTTSCEEEEEEECCCSSSSCCCCEEEEEEESSHHHHHHHHHCCCCEETTEECCEEEC
T ss_pred             CCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEeCCCCCCcCcEEEEEECCHHHHHHHHHHcCCCEECCEEEEEEec
Confidence            358999999999999999999999999999999997643   3579999999999999995 69999999999999754

>2la6_A RNA-binding protein FUS; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, RNA recognition; NMR {Homo sapiens}

Probab=99.59  E-value=5.9e-15  Score=110.87  Aligned_cols=75  Identities=20%  Similarity=0.318  Sum_probs=68.0

Q ss_pred             CCcEEEEeCCCCCCCHHHHHHHhccCCCceE--------EEEeecCC---cCceEEEEecCHHHHHHHH-hcCCCeecCe
Q 026156            4 GGYVAEVVGLSPNATEKDIHEFFSHCGDPVH--------VEIIRSGE---CGGTAYVTFSNAYALETAV-LLSGATIVDQ   71 (242)
Q Consensus         4 ~~~tV~VsNLs~~~TE~dLrefFs~~G~I~~--------V~l~~~~~---~~~~AfV~F~~~~aA~tAl-~Lng~~l~g~   71 (242)
                      ..++|||+|||+.+++++|+++|+.||.|.+        |.+..+..   ..++|||+|.++++|+.|+ .|||..|.|+
T Consensus        12 ~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~~~~~~~v~i~~~~~~g~~~G~afV~f~~~~~a~~Ai~~l~g~~~~g~   91 (99)
T 2la6_A           12 DNNTIFVQGLGENVTIESVADYFKQIGIIKTNKKTGQPMINLYTDRETGKLKGEATVSFDDPPSAKAAIDWFDGKEFSGN   91 (99)
T ss_dssp             CCSEEEEECCCSSCCHHHHHHHHTTTSCBCEETTTTEESEEEEECTTTCSEEEEEEEEBSSHHHHHHHHHHHTTCBSSSS
T ss_pred             CCCEEEEeCCCCCCCHHHHHHHHHHhCCEeeccccccccEEEEecCCCCCeeeEEEEEECCHHHHHHHHHHhCCCEeCCc
Confidence            4579999999999999999999999999999        99997743   2469999999999999996 6999999999


Q ss_pred             eEEEEec
Q 026156           72 PVCIIRW   78 (242)
Q Consensus        72 ~I~V~~a   78 (242)
                      .|.|..+
T Consensus        92 ~l~V~~A   98 (99)
T 2la6_A           92 PIKVSFA   98 (99)
T ss_dssp             BCEEEEC
T ss_pred             EEEEEec
Confidence            9999865

>2cqd_A RNA-binding region containing protein 1; RNA recognition motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1

Probab=99.59  E-value=1.1e-14  Score=112.27  Aligned_cols=77  Identities=19%  Similarity=0.130  Sum_probs=68.2

Q ss_pred             CCcEEEEeCCCCCCCHHHHHHHhccCCCceEEEEeecCC---cCceEEEEecCHHHHHHHH-hcCCCeecCeeEEEEecC
Q 026156            4 GGYVAEVVGLSPNATEKDIHEFFSHCGDPVHVEIIRSGE---CGGTAYVTFSNAYALETAV-LLSGATIVDQPVCIIRWG   79 (242)
Q Consensus         4 ~~~tV~VsNLs~~~TE~dLrefFs~~G~I~~V~l~~~~~---~~~~AfV~F~~~~aA~tAl-~Lng~~l~g~~I~V~~a~   79 (242)
                      ..++|||+|||+.+++++|+++|+.||.|.+|.|+.+..   ..++|||+|.++++|+.|+ .||+ .|.|+.|.|..+.
T Consensus        16 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~Ai~~~~~-~~~g~~l~V~~a~   94 (116)
T 2cqd_A           16 TFTKIFVGGLPYHTTDASLRKYFEGFGDIEEAVVITDRQTGKSRGYGFVTMADRAAAERACKDPNP-IIDGRKANVNLAY   94 (116)
T ss_dssp             SSSEEEEECCCSSCCHHHHHHHHHTTSCEEEEEESCCSSSCCCCSEEEEEESSHHHHHHHHTCSSC-EETTEECEEEEST
T ss_pred             CCCEEEEeCCCCCCCHHHHHHHHHhCCCeeEEEEEEcCCCCccceEEEEEECCHHHHHHHHHhCCC-cCCCEEEEEEEcc
Confidence            357999999999999999999999999999999997743   3469999999999999995 6676 9999999999875


Q ss_pred             CC
Q 026156           80 EY   81 (242)
Q Consensus        80 ~~   81 (242)
                      ..
T Consensus        95 ~~   96 (116)
T 2cqd_A           95 LG   96 (116)
T ss_dssp             TT
T ss_pred             cC
Confidence            43

>2cpi_A CCR4-NOT transcription complex subunit 4; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1

Probab=99.59  E-value=3.5e-15  Score=114.96  Aligned_cols=77  Identities=21%  Similarity=0.230  Sum_probs=68.8

Q ss_pred             CcEEEEeCCCCCCCHHHHH---HHhccCCCceEEEEeecCC------cCceEEEEecCHHHHHHHH-hcCCCeecCeeEE
Q 026156            5 GYVAEVVGLSPNATEKDIH---EFFSHCGDPVHVEIIRSGE------CGGTAYVTFSNAYALETAV-LLSGATIVDQPVC   74 (242)
Q Consensus         5 ~~tV~VsNLs~~~TE~dLr---efFs~~G~I~~V~l~~~~~------~~~~AfV~F~~~~aA~tAl-~Lng~~l~g~~I~   74 (242)
                      .++|||+|||+.+++++|+   ++|+.||+|.+|.|.++.+      ..++|||+|.++++|+.|+ .|||..|+|++|.
T Consensus        15 ~~~l~V~nLp~~~~~~~l~~~~~~F~~~G~i~~v~i~~~~~~~~~~~~~G~afV~f~~~~~A~~Ai~~lng~~~~gr~l~   94 (111)
T 2cpi_A           15 KNLVFVVGLSQRLADPEVLKRPEYFGKFGKIHKVVINNSTSYAGSQGPSASAYVTYIRSEDALRAIQCVNNVVVDGRTLK   94 (111)
T ss_dssp             SSCEEEEEECTTTCCHHHHHSTTTTTTTSCEEEEEEECCSSCCSSSCCCEEEEEEESSHHHHHHHHHHHTTEEETTEEEE
T ss_pred             CCEEEEECCCCCCCHHHHHHHHHHhhccCCEEEEEEecCCCcCccCCCCeEEEEEECcHHHHHHHHHHhCCCEECCEEEE
Confidence            4689999999999999999   9999999999999997653      2269999999999999995 6899999999999


Q ss_pred             EEecCCC
Q 026156           75 IIRWGEY   81 (242)
Q Consensus        75 V~~a~~~   81 (242)
                      |..+.+.
T Consensus        95 V~~a~~k  101 (111)
T 2cpi_A           95 ASLGTTK  101 (111)
T ss_dssp             EESCCCC
T ss_pred             EEecccc
Confidence            9976543

>2ek1_A RNA-binding protein 12; RNA recognition motif, dimer, structural genomics, NPPSFA, national project on protein structural and functional analyses; 2.00A {Homo sapiens} PDB: 2ek6_A

Probab=99.59  E-value=3.2e-15  Score=110.97  Aligned_cols=76  Identities=21%  Similarity=0.164  Sum_probs=67.3

Q ss_pred             CCcEEEEeCCCCCCCHHHHHHHhccCCCceEEEEeecCC---cCceEEEEecCHHHHHHHH-hcCCCeecCeeEEEEecC
Q 026156            4 GGYVAEVVGLSPNATEKDIHEFFSHCGDPVHVEIIRSGE---CGGTAYVTFSNAYALETAV-LLSGATIVDQPVCIIRWG   79 (242)
Q Consensus         4 ~~~tV~VsNLs~~~TE~dLrefFs~~G~I~~V~l~~~~~---~~~~AfV~F~~~~aA~tAl-~Lng~~l~g~~I~V~~a~   79 (242)
                      ..++|||+|||+.+++++|+++|+.||.|.++.++.+..   ..++|||+|.++++|+.|+ .|||..|.|++|.|..+.
T Consensus        14 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~~~~~~~~g~~~g~afV~f~~~~~a~~Ai~~l~g~~~~gr~l~v~~a~   93 (95)
T 2ek1_A           14 GPTVIKVQNMPFTVSIDEILDFFYGYQVIPGSVCLKYNEKGMPTGEAMVAFESRDEATAAVIDLNDRPIGSRKVKLSGPS   93 (95)
T ss_dssp             -CEEEEEECCCTTCCHHHHHHHTTTSCBCTTCCEEEECTTSCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEECCC
T ss_pred             CCCEEEEeCCCCCCCHHHHHHHHHhcCCccceEEEEeCCCCCEeeEEEEEECCHHHHHHHHHHhCCCeECCcEEEEEecc
Confidence            347999999999999999999999999999888887543   2469999999999999996 599999999999998653

>2krb_A Eukaryotic translation initiation factor 3 subunit B; EIF3, eukaryotic initiation factor, EIF3B, EIF3J; NMR {Homo sapiens}

Probab=99.59  E-value=1.4e-15  Score=110.46  Aligned_cols=70  Identities=17%  Similarity=0.172  Sum_probs=63.1

Q ss_pred             cEEEEeCCCCCC------CHHHHHHHhccCCCceEEEEeecCC-cCceEEEEecCHHHHHHHH-hcCCCeecCe-eEEE
Q 026156            6 YVAEVVGLSPNA------TEKDIHEFFSHCGDPVHVEIIRSGE-CGGTAYVTFSNAYALETAV-LLSGATIVDQ-PVCI   75 (242)
Q Consensus         6 ~tV~VsNLs~~~------TE~dLrefFs~~G~I~~V~l~~~~~-~~~~AfV~F~~~~aA~tAl-~Lng~~l~g~-~I~V   75 (242)
                      ++|||+|||+.+      ++++|+++|+.||+|.+|.+.++.+ ..++|||+|.++++|..|+ .|||..|+|+ +|.|
T Consensus         2 ~~l~V~nLp~~~~~~~~~t~~~l~~~F~~~G~i~~v~i~~~~g~~~g~afV~f~~~~~A~~Ai~~lng~~~~g~~~l~V   80 (81)
T 2krb_A            2 SVIVVDNVPQVGPDRLEKLKNVIHKIFSKFGKITNDFYPEEDGKTKGYIFLEYASPAHAVDAVKNADGYKLDKQHTFRV   80 (81)
T ss_dssp             CEEEEESCCCCCTTTHHHHHHHHHHHHHTTCCEEEEECCCBTTBCCCEEEEEESSHHHHHHHHTTSSSCCCSSSSCCCC
T ss_pred             CEEEEeCCCCCcHHHHHHHHHHHHHHHhhcCCeEEEEecCCCCcEeEEEEEEECCHHHHHHHHHHhcCcccCCceeEEe
Confidence            699999999999      7899999999999999999985544 3479999999999999995 6999999999 8876

>2ytc_A PRE-mRNA-splicing factor RBM22; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.59  E-value=5.7e-15  Score=107.47  Aligned_cols=72  Identities=18%  Similarity=0.215  Sum_probs=65.7

Q ss_pred             CCcEEEEeCCCCCCCHHHHHHHhccCCCceEEEEeecCCcCceEEEEecCHHHHHHHHh-c-CCCeecCeeEEEEec
Q 026156            4 GGYVAEVVGLSPNATEKDIHEFFSHCGDPVHVEIIRSGECGGTAYVTFSNAYALETAVL-L-SGATIVDQPVCIIRW   78 (242)
Q Consensus         4 ~~~tV~VsNLs~~~TE~dLrefFs~~G~I~~V~l~~~~~~~~~AfV~F~~~~aA~tAl~-L-ng~~l~g~~I~V~~a   78 (242)
                      ..++|||+|||+.+++++|+++|+.||+|.+|.+.++   .++|||+|.++++|..|+. | ||..|.|++|.|..+
T Consensus        11 ~~~~l~V~~l~~~~t~~~l~~~f~~~G~i~~~~~~~~---kg~afV~f~~~~~A~~a~~~l~~~~~~~g~~l~v~~a   84 (85)
T 2ytc_A           11 TITTLYVGGLGDTITETDLRNHFYQFGEIRTITVVQR---QQCAFIQFATRQAAEVAAEKSFNKLIVNGRRLNVKWG   84 (85)
T ss_dssp             SCCCEEEECCTTTSCHHHHHHHHHTTSCEEEEEEEGG---GTEEEEEESSHHHHHHHHHTTTTTCEETTEECCEEEC
T ss_pred             CccEEEEcCCCCCCCHHHHHHHHHhCCCEeEEEEECC---CCEEEEEECCHHHHHHHHHHhcCCeeECCCEEEEEec
Confidence            3479999999999999999999999999999999974   4699999999999999964 7 999999999999754

>3ns6_A Eukaryotic translation initiation factor 3 subuni; 1.25A {Saccharomyces cerevisiae} PDB: 3ns5_A

Probab=99.59  E-value=1.6e-15  Score=115.06  Aligned_cols=75  Identities=15%  Similarity=0.183  Sum_probs=68.8

Q ss_pred             CcEEEEeCCCC------CCCHHHHHHHhccCCCceEEEEeecCC---cCceEEEEecCHHHHHHHH-hcCCCeecC-eeE
Q 026156            5 GYVAEVVGLSP------NATEKDIHEFFSHCGDPVHVEIIRSGE---CGGTAYVTFSNAYALETAV-LLSGATIVD-QPV   73 (242)
Q Consensus         5 ~~tV~VsNLs~------~~TE~dLrefFs~~G~I~~V~l~~~~~---~~~~AfV~F~~~~aA~tAl-~Lng~~l~g-~~I   73 (242)
                      .++|||+|||+      .+++++|+++|+.||+|.+|.|+.+..   +.++|||+|.++++|+.|+ .|||..|.| +.|
T Consensus         6 ~~~vfV~nLp~v~~~~~~~~~~~L~~~F~~~G~i~~v~i~~d~~tg~~kG~afV~f~~~~~A~~Ai~~lng~~~~g~r~l   85 (100)
T 3ns6_A            6 DQYIVVNGAPVIPSAKVPVLKKALTSLFSKAGKVVNMEFPIDEATGKTKGFLFVECGSMNDAKKIIKSFHGKRLDLKHRL   85 (100)
T ss_dssp             GGEEEEESCCCCBGGGHHHHHHHHHHHHHTTSCEEEEECCEETTTTEECSEEEEEESSHHHHHHHHHHHTTCBSSSSCBC
T ss_pred             CcEEEEeCCCcCChHHHHHHHHHHHHHHHhcCCEeEEEEEEcCCCCccceEEEEEECCHHHHHHHHHHhCCcccCCCeEE
Confidence            57999999999      999999999999999999999998754   3479999999999999995 799999999 999


Q ss_pred             EEEecC
Q 026156           74 CIIRWG   79 (242)
Q Consensus        74 ~V~~a~   79 (242)
                      .|..+.
T Consensus        86 ~V~~a~   91 (100)
T 3ns6_A           86 FLYTMK   91 (100)
T ss_dssp             EEEESH
T ss_pred             EEEECc
Confidence            998764

>2cpe_A RNA-binding protein EWS; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1

Probab=99.59  E-value=8.6e-15  Score=112.27  Aligned_cols=78  Identities=22%  Similarity=0.305  Sum_probs=69.3

Q ss_pred             CCcEEEEeCCCCCCCHHHHHHHhccCCCce--------EEEEeecCC---cCceEEEEecCHHHHHHHH-hcCCCeecCe
Q 026156            4 GGYVAEVVGLSPNATEKDIHEFFSHCGDPV--------HVEIIRSGE---CGGTAYVTFSNAYALETAV-LLSGATIVDQ   71 (242)
Q Consensus         4 ~~~tV~VsNLs~~~TE~dLrefFs~~G~I~--------~V~l~~~~~---~~~~AfV~F~~~~aA~tAl-~Lng~~l~g~   71 (242)
                      ..++|||+|||+.+|+++|+++|+.||.|.        .|.|..+..   ..++|||+|.++++|+.|+ .|||..|.|+
T Consensus        14 ~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~~~~~~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~   93 (113)
T 2cpe_A           14 DNSAIYVQGLNDSVTLDDLADFFKQCGVVKMNKRTGQPMIHIYLDKETGKPKGDATVSYEDPPTAKAAVEWFDGKDFQGS   93 (113)
T ss_dssp             CCCEEEEECCCTTCCHHHHHHHHTTTSCBCBCSSSCCBSEECCBCTTTCSBCSEEEEEBSSHHHHHHHHHHHTTCEETTE
T ss_pred             CCCEEEEcCCCCCCCHHHHHHHHHhcCCEeEccccCccCEEEEEeCCCCCeeeEEEEEECCHHHHHHHHHHcCCCccCCC
Confidence            347999999999999999999999999999        699987633   3469999999999999996 5999999999


Q ss_pred             eEEEEecCCC
Q 026156           72 PVCIIRWGEY   81 (242)
Q Consensus        72 ~I~V~~a~~~   81 (242)
                      .|.|..+...
T Consensus        94 ~l~V~~a~~~  103 (113)
T 2cpe_A           94 KLKVSLARKK  103 (113)
T ss_dssp             ECEEECSSCC
T ss_pred             EEEEEECCCC
Confidence            9999977554

>1why_A Hypothetical protein riken cDNA 1810017N16; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1

Probab=99.59  E-value=6.4e-15  Score=110.26  Aligned_cols=73  Identities=18%  Similarity=0.226  Sum_probs=67.0

Q ss_pred             CcEEEEeCCCCCCCHHHHHHHhccCCCceEEEEeecCCcCceEEEEecCHHHHHHHH-hcCCCeec--CeeEEEEecCC
Q 026156            5 GYVAEVVGLSPNATEKDIHEFFSHCGDPVHVEIIRSGECGGTAYVTFSNAYALETAV-LLSGATIV--DQPVCIIRWGE   80 (242)
Q Consensus         5 ~~tV~VsNLs~~~TE~dLrefFs~~G~I~~V~l~~~~~~~~~AfV~F~~~~aA~tAl-~Lng~~l~--g~~I~V~~a~~   80 (242)
                      .++|||+|||+.+++++|+++|+.||+|.+|.+..+   .++|||+|.++++|+.|+ .|||..|.  |+.|.|..+.+
T Consensus        17 ~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~v~~~~~---~g~afV~f~~~~~A~~A~~~l~g~~~~~~g~~l~V~~a~~   92 (97)
T 1why_A           17 TTRLWVGGLGPNTSLAALAREFDRFGSIRTIDHVKG---DSFAYIQYESLDAAQAACAKMRGFPLGGPDRRLRVDFAKS   92 (97)
T ss_dssp             CSCEEEECCCSSCCHHHHHHHHHTTSCEEEEEECSS---SCCEEEEESSHHHHHHHHHHHTTCBCSSSSCBCEEEECCC
T ss_pred             CCEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEeCC---CCEEEEEECCHHHHHHHHHHHCCCEeCCCCcEEEEEECCC
Confidence            479999999999999999999999999999999864   469999999999999996 59999999  99999997654

>1nu4_A U1A RNA binding domain; RNA recognition motif, U1 small nuclear ribonucleoprotein, R binding domain, RNA binding protein; HET: MLA; 1.80A {Homo sapiens} SCOP: d.58.7.1 PDB: 1drz_A* 1urn_A 3hhn_B* 3egz_A* 1zzn_A* 1u6b_A* 3cun_A* 3cul_A* 3g8s_A* 3g8t_A* 3g96_A* 3g9c_A* 3irw_P* 3mum_P* 3mur_P* 3mut_P* 3muv_P* 3mxh_P* 3p49_B 3r1h_A* ...

Probab=99.59  E-value=3.1e-15  Score=111.46  Aligned_cols=77  Identities=19%  Similarity=0.299  Sum_probs=68.9

Q ss_pred             CCcEEEEeCCCCCCCHHHHH----HHhccCCCceEEEEeecCCcCceEEEEecCHHHHHHHH-hcCCCeecCeeEEEEec
Q 026156            4 GGYVAEVVGLSPNATEKDIH----EFFSHCGDPVHVEIIRSGECGGTAYVTFSNAYALETAV-LLSGATIVDQPVCIIRW   78 (242)
Q Consensus         4 ~~~tV~VsNLs~~~TE~dLr----efFs~~G~I~~V~l~~~~~~~~~AfV~F~~~~aA~tAl-~Lng~~l~g~~I~V~~a   78 (242)
                      ..++|||+|||+.+++++|+    ++|+.||.|.+|.+.+.+...++|||+|.++++|..|+ .|||..|.|+.|.|..+
T Consensus         7 ~~~~l~V~nLp~~~~~~~l~~~l~~~f~~~G~i~~v~i~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a   86 (97)
T 1nu4_A            7 PNHTIYINNLNEKIKKDELKKSLHAIFSRFGQILDILVSRSLKMRGQAFVIFKEVSSATNALRSMQGFPFYDKPMRIQYA   86 (97)
T ss_dssp             CCSEEEEESCCTTSCHHHHHHHHHHHHGGGSCEEEEECCHHHHHTTCEEEEESSHHHHHHHHHHHTTCEETTEECEEEEC
T ss_pred             CCCEEEEeCCCCCCCHHHHHHHHHHHHHhCCCEEEEEEEcCCCcCcEEEEEeCCHHHHHHHHHHhCCCEECCcEEEEEEc
Confidence            34799999999999999999    99999999999999854444579999999999999995 69999999999999976


Q ss_pred             CC
Q 026156           79 GE   80 (242)
Q Consensus        79 ~~   80 (242)
                      .+
T Consensus        87 ~~   88 (97)
T 1nu4_A           87 KT   88 (97)
T ss_dssp             SS
T ss_pred             cC
Confidence            43

>2wbr_A GW182, gawky, LD47780P; DNA-binding protein, RRM, RBD, TNRC6A, mirnas, P-bodies, argonaute, mRNA decay; NMR {Drosophila melanogaster}

Probab=99.58  E-value=4.1e-15  Score=112.78  Aligned_cols=74  Identities=11%  Similarity=0.088  Sum_probs=68.0

Q ss_pred             CCCCcEEEEeCCCCCCCHHHHHHHhccCCCceEEEEeecCCcCceEEEEecCHHHHHHH-HhcCCCeecCeeEEEEec
Q 026156            2 YAGGYVAEVVGLSPNATEKDIHEFFSHCGDPVHVEIIRSGECGGTAYVTFSNAYALETA-VLLSGATIVDQPVCIIRW   78 (242)
Q Consensus         2 ~~~~~tV~VsNLs~~~TE~dLrefFs~~G~I~~V~l~~~~~~~~~AfV~F~~~~aA~tA-l~Lng~~l~g~~I~V~~a   78 (242)
                      ++....|+|+||++.+||++|+++|+.||+|.++.+..   +.+||||+|.++++|+.| ..|||..|+|++|.|..+
T Consensus         4 ~~~~~wL~VgNL~~~~te~~L~~lF~q~G~V~~~~l~~---~kGfaFVey~~~~eA~~Ai~~Ln~~~l~gr~I~V~~A   78 (89)
T 2wbr_A            4 AWGSSWLLLKNLTAQIDGPTLRTLCMQHGPLVSFHPYL---NQGIALCKYTTREEANKAQMALNNCVLANTTIFAESP   78 (89)
T ss_dssp             CCCCCEEEEECCCTTCCCHHHHHHHHHHSCEEEEEEET---TTTEEEEEESSHHHHHHHHHHHTTEEETTEEEEEECC
T ss_pred             CCccceEEEeCCCccCCHHHHHHHHHhhCCEEEEEEcC---CCcEEEEEECCHHHHHHHHHHhcCCEECCcEEEEEEC
Confidence            34557899999999999999999999999999999976   357999999999999999 699999999999999866

>2cq1_A PTB-like protein L; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1

Probab=99.58  E-value=1.6e-14  Score=110.98  Aligned_cols=73  Identities=16%  Similarity=0.213  Sum_probs=65.7

Q ss_pred             CcEEEEeCCCCCCCHHHHHHHhccCCCceEEEEeecCCcCceEEEEecCHHHHHHHH-h--cCCCeecCeeEEEEecCC
Q 026156            5 GYVAEVVGLSPNATEKDIHEFFSHCGDPVHVEIIRSGECGGTAYVTFSNAYALETAV-L--LSGATIVDQPVCIIRWGE   80 (242)
Q Consensus         5 ~~tV~VsNLs~~~TE~dLrefFs~~G~I~~V~l~~~~~~~~~AfV~F~~~~aA~tAl-~--Lng~~l~g~~I~V~~a~~   80 (242)
                      .++|||+|||+.++|++|+++|+.||.|.+|.++++   .++|||+|.++++|..|+ .  .++..|.|++|.|..+..
T Consensus        15 ~~~l~V~nLp~~~te~~L~~~F~~fG~v~~v~i~~~---kg~aFVef~~~~~A~~Ai~~l~~~~~~~~Gr~l~V~~a~~   90 (101)
T 2cq1_A           15 SRVLHIRKLPGEVTETEVIALGLPFGKVTNILMLKG---KNQAFLELATEEAAITMVNYYSAVTPHLRNQPIYIQYSNH   90 (101)
T ss_dssp             CSEEEEESCCTTCCHHHHHHTTTTTSCEEEEEEETT---TTEEEEEESSHHHHHHHHHHHHHSCCEETTEECEEEECSC
T ss_pred             CCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEECC---CCEEEEEECCHHHHHHHHHHhccCCceECCcEEEEEEcCc
Confidence            479999999999999999999999999999999865   579999999999999994 3  468899999999997753

>2hvz_A Splicing factor, arginine/serine-rich 7; RRM, RNA binding protein; NMR {Homo sapiens}

Probab=99.58  E-value=3.6e-15  Score=112.27  Aligned_cols=75  Identities=27%  Similarity=0.233  Sum_probs=68.9

Q ss_pred             cEEEEeCCCCCCCHHHHHHHhccCCCceEEEEeecCCcCceEEEEecCHHHHHHHH-hcCCCeecCeeEEEEecCCCC
Q 026156            6 YVAEVVGLSPNATEKDIHEFFSHCGDPVHVEIIRSGECGGTAYVTFSNAYALETAV-LLSGATIVDQPVCIIRWGEYT   82 (242)
Q Consensus         6 ~tV~VsNLs~~~TE~dLrefFs~~G~I~~V~l~~~~~~~~~AfV~F~~~~aA~tAl-~Lng~~l~g~~I~V~~a~~~~   82 (242)
                      ++|||+|||+.+|+++|+++|+.||+|.+|.+..+  ..++|||+|.++++|+.|+ .|||..|.|+.|.|..+.+.+
T Consensus         1 ~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~--~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a~~~~   76 (101)
T 2hvz_A            1 MKVYVGNLGTGAGKGELERAFSYYGPLRTVWIARN--PPGFAFVEFEDPRDAEDAVRGLDGKVICGSRVRVELSTGMP   76 (101)
T ss_dssp             CEEEEECCCSSCSHHHHHHHHHHHCCCSEEEEESS--SSSEEEEECSSHHHHHHHHHHHHHSCSSSCCCEEEESSSCC
T ss_pred             CEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeeC--CCCEEEEEECCHHHHHHHHHHHCCCeECCcEEEEEEccCCC
Confidence            48999999999999999999999999999999977  4579999999999999995 599999999999999876544

>1x4d_A Matrin 3; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1

Probab=99.58  E-value=4.2e-15  Score=114.76  Aligned_cols=76  Identities=13%  Similarity=0.194  Sum_probs=66.8

Q ss_pred             CCcEEEEeCCCC-CCCHHHHHHHhccCCCceEEEEeecCCcCceEEEEecCHHHHHHHH-hcCC--CeecCeeEEEEecC
Q 026156            4 GGYVAEVVGLSP-NATEKDIHEFFSHCGDPVHVEIIRSGECGGTAYVTFSNAYALETAV-LLSG--ATIVDQPVCIIRWG   79 (242)
Q Consensus         4 ~~~tV~VsNLs~-~~TE~dLrefFs~~G~I~~V~l~~~~~~~~~AfV~F~~~~aA~tAl-~Lng--~~l~g~~I~V~~a~   79 (242)
                      ..++|||+|||+ .+||++|+++|+.||+|.+|.|++++   ++|||+|+++++|..|+ .||+  ..|.|++|.|..+.
T Consensus        14 p~~~l~V~nLp~~~~te~dL~~lF~~fG~V~~v~i~~~k---g~aFVef~~~~~A~~Ai~~l~~~~~~~~Gr~l~V~~a~   90 (102)
T 1x4d_A           14 TRRVVHIMDFQRGKNLRYQLLQLVEPFGVISNHLILNKI---NEAFIEMATTEDAQAAVDYYTTTPALVFGKPVRVHLSQ   90 (102)
T ss_dssp             CCCEEEEESCCCSSSHHHHHHTTTGGGSCEEEEEECSSS---SCEEEEESSHHHHHHHHHHHHHSCCEETTEECEEEEEC
T ss_pred             CCCEEEEeCCCCCcCCHHHHHHHHHhcCCEEEEEEEcCC---CEEEEEECCHHHHHHHHHHHcCCCceECCcEEEEEECC
Confidence            347999999999 99999999999999999999998753   69999999999999994 5665  56999999999886


Q ss_pred             CCC
Q 026156           80 EYT   82 (242)
Q Consensus        80 ~~~   82 (242)
                      .+.
T Consensus        91 ~~~   93 (102)
T 1x4d_A           91 KYK   93 (102)
T ss_dssp             CCT
T ss_pred             CCC
Confidence            543

>2cpd_A Apobec-1 stimulating protein; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1

Probab=99.58  E-value=2.1e-14  Score=107.84  Aligned_cols=73  Identities=23%  Similarity=0.231  Sum_probs=66.3

Q ss_pred             CCcEEEEeCCCCCCCHHHHHHHhccC--CCceEEEEeecCCcCceEEEEecCHHHHHHHH-hcCCCeecCeeEEEEecCC
Q 026156            4 GGYVAEVVGLSPNATEKDIHEFFSHC--GDPVHVEIIRSGECGGTAYVTFSNAYALETAV-LLSGATIVDQPVCIIRWGE   80 (242)
Q Consensus         4 ~~~tV~VsNLs~~~TE~dLrefFs~~--G~I~~V~l~~~~~~~~~AfV~F~~~~aA~tAl-~Lng~~l~g~~I~V~~a~~   80 (242)
                      ..++|||+|||+.+++++|+++|+.|  |.|.+|.+.     .++|||+|.++++|..|+ .|||..|.|+.|.|..+.+
T Consensus        14 ~~~~l~V~nLp~~~t~~~l~~~F~~~g~g~v~~~~~~-----~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a~~   88 (99)
T 2cpd_A           14 SVKILYVRNLMLSTSEEMIEKEFNNIKPGAVERVKKI-----RDYAFVHFSNREDAVEAMKALNGKVLDGSPIEVTLAKP   88 (99)
T ss_dssp             CCCEEEEESCCTTCCHHHHHHHHHTTSTTCEEEEEEC-----SSEEEEEESSHHHHHHHHHHHSSEEETTEEEEEECCCC
T ss_pred             CcCEEEEeCCCCCCCHHHHHHHHHhcCCcceEEEEEe-----CCeEEEEeCCHHHHHHHHHHhCCCEeCCcEEEEEECCC
Confidence            45799999999999999999999999  999999886     359999999999999996 5999999999999997754


Q ss_pred             C
Q 026156           81 Y   81 (242)
Q Consensus        81 ~   81 (242)
                      .
T Consensus        89 ~   89 (99)
T 2cpd_A           89 V   89 (99)
T ss_dssp             C
T ss_pred             C
Confidence            3

>2hgl_A HNRPF protein, heterogeneous nuclear ribonucleoprotein F; RNA recognition motif, G-tract, G-quadruplex, alternative, splicing, RNA binding protein; NMR {Homo sapiens} PDB: 2kfy_A

Probab=99.58  E-value=3.5e-15  Score=120.59  Aligned_cols=75  Identities=20%  Similarity=0.367  Sum_probs=68.4

Q ss_pred             CCcEEEEeCCCCCCCHHHHHHHhccCCC---ceEEEEeecCC--cCceEEEEecCHHHHHHHHhcCCCeecCeeEEEEec
Q 026156            4 GGYVAEVVGLSPNATEKDIHEFFSHCGD---PVHVEIIRSGE--CGGTAYVTFSNAYALETAVLLSGATIVDQPVCIIRW   78 (242)
Q Consensus         4 ~~~tV~VsNLs~~~TE~dLrefFs~~G~---I~~V~l~~~~~--~~~~AfV~F~~~~aA~tAl~Lng~~l~g~~I~V~~a   78 (242)
                      ..++|||+|||+++|+++|++||+.||.   |.+|.|+.+..  ..++|||+|.++++|+.|+.|||..|+|+.|.|..+
T Consensus        43 ~~~~lfVgnLp~~~te~dL~~~F~~~G~v~~v~~v~i~~d~~g~srG~aFV~F~~~e~a~~Al~~~g~~l~gr~i~V~~a  122 (136)
T 2hgl_A           43 EGFVVKLRGLPWSCSVEDVQNFLSDCTIHDGAAGVHFIYTREGRQSGEAFVELGSEDDVKMALKKDRESMGHRYIEVFKS  122 (136)
T ss_dssp             TTCEEEEESCCTTCCHHHHHHHTTTCCCSSSSTTEEEEECSSSCEEEEEEEECSSHHHHHHHHTTTEEESSSSEEEEEEC
T ss_pred             CCCEEEEeCCCCCCCHHHHHHHHHHhCCcCceeEEEEEECCCCCCCeEEEEEECCHHHHHHHHhcCCCEECCEEEEEEEC
Confidence            3578999999999999999999999999   89999997644  346999999999999999889999999999999875

>2hzc_A Splicing factor U2AF 65 kDa subunit; RNA splicing, RRM, RNA recognition, alternative conformation binding protein; HET: P6G; 1.47A {Homo sapiens} PDB: 1u2f_A

Probab=99.57  E-value=7e-15  Score=107.26  Aligned_cols=70  Identities=21%  Similarity=0.272  Sum_probs=65.7

Q ss_pred             CcEEEEeCCCCCCCHHHHHHHhccC----C-------CceEEEEeecCCcCceEEEEecCHHHHHHHHhcCCCeecCeeE
Q 026156            5 GYVAEVVGLSPNATEKDIHEFFSHC----G-------DPVHVEIIRSGECGGTAYVTFSNAYALETAVLLSGATIVDQPV   73 (242)
Q Consensus         5 ~~tV~VsNLs~~~TE~dLrefFs~~----G-------~I~~V~l~~~~~~~~~AfV~F~~~~aA~tAl~Lng~~l~g~~I   73 (242)
                      .++|||+|||+.+++++|+++|+.|    |       .|.++.+.++   .++|||+|.++++|..|+.|||..|.|+.|
T Consensus         6 ~~~l~V~nLp~~~t~~~l~~~F~~~~~~~g~~~~~~~~v~~~~~~~~---kg~afV~f~~~~~a~~A~~l~g~~~~g~~l   82 (87)
T 2hzc_A            6 ARRLYVGNIPFGITEEAMMDFFNAQMRLGGLTQAPGNPVLAVQINQD---KNFAFLEFRSVDETTQAMAFDGIIFQGQSL   82 (87)
T ss_dssp             GGEEEEESCCTTCCHHHHHHHHHHHHHHTTCCSSSSCSEEEEEECSS---SSEEEEEESSHHHHHHHGGGTTCEETTEEC
T ss_pred             CCEEEEeCCCCCCCHHHHHHHHHHHhhhcccccCCCCcceEEEecCC---CcEEEEEcCCHHHHHHHHhcCCCEECCeEE
Confidence            4799999999999999999999999    8       9999999865   479999999999999999999999999999


Q ss_pred             EEEe
Q 026156           74 CIIR   77 (242)
Q Consensus        74 ~V~~   77 (242)
                      .|.+
T Consensus        83 ~V~r   86 (87)
T 2hzc_A           83 KIRR   86 (87)
T ss_dssp             EEEC
T ss_pred             EEeC
Confidence            9974

>2lmi_A GRSF-1, G-rich sequence factor 1; G-rich RNA sequence binding factor, RNA binding domain, STRU genomics, joint center for structural genomics, JCSG; NMR {Homo sapiens}

Probab=99.57  E-value=1.7e-15  Score=115.99  Aligned_cols=76  Identities=16%  Similarity=0.237  Sum_probs=68.7

Q ss_pred             CCcEEEEeCCCCCCCHHHHHHHhccCCC---ceEEEEeecCC--cCceEEEEecCHHHHHHHHhcCCCeecCeeEEEEec
Q 026156            4 GGYVAEVVGLSPNATEKDIHEFFSHCGD---PVHVEIIRSGE--CGGTAYVTFSNAYALETAVLLSGATIVDQPVCIIRW   78 (242)
Q Consensus         4 ~~~tV~VsNLs~~~TE~dLrefFs~~G~---I~~V~l~~~~~--~~~~AfV~F~~~~aA~tAl~Lng~~l~g~~I~V~~a   78 (242)
                      ..++|||+|||+.+|+++|++||+.||.   |.+|.|+.+..  ..++|||+|.++++|+.|+.+||..|+|+.|.|..+
T Consensus        10 ~~~~l~V~nLp~~~te~~l~~~F~~~g~~~~v~~v~i~~~~~g~~~G~afV~F~~~~~a~~Al~~~~~~~~gr~i~V~~a   89 (107)
T 2lmi_A           10 DVFLIRAQGLPWSCTMEDVLNFFSDCRIRNGENGIHFLLNRDGKRRGDALIEMESEQDVQKALEKHRMYMGQRYVEVYEI   89 (107)
T ss_dssp             SCCEEEEECCCSSCCSHHHHHHTTTSCBTTTTTTEECCCCTTSTTCSEEEEEBSSHHHHHHHHTTTTCCSSSSCCCCEEC
T ss_pred             CccEEEEeCCCCCCCHHHHHHHHHhcCCcCCcceEEEEECCCCCEeeEEEEEECCHHHHHHHHHhCcceeCCeEEEEEEC
Confidence            4579999999999999999999999998   99999987643  457999999999999999889999999999999876


Q ss_pred             C
Q 026156           79 G   79 (242)
Q Consensus        79 ~   79 (242)
                      .
T Consensus        90 ~   90 (107)
T 2lmi_A           90 N   90 (107)
T ss_dssp             C
T ss_pred             C
Confidence            4

>2dgu_A Heterogeneous nuclear ribonucleoprotein Q; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2dk2_A

Probab=99.57  E-value=1.1e-14  Score=110.31  Aligned_cols=74  Identities=19%  Similarity=0.212  Sum_probs=67.4

Q ss_pred             CcEEEEeCCCCCCCHHHHHHHhccCCCceEEEEeecCCcCceEEEEecCHHHHHHHH-hcCCCeecCeeEEEEecCCCCC
Q 026156            5 GYVAEVVGLSPNATEKDIHEFFSHCGDPVHVEIIRSGECGGTAYVTFSNAYALETAV-LLSGATIVDQPVCIIRWGEYTD   83 (242)
Q Consensus         5 ~~tV~VsNLs~~~TE~dLrefFs~~G~I~~V~l~~~~~~~~~AfV~F~~~~aA~tAl-~Lng~~l~g~~I~V~~a~~~~~   83 (242)
                      .++|||+|||+.+|+++|+++|+.||.|.+|.+.+     ++|||+|.++++|+.|+ .|||..|.|+.|.|..+.+...
T Consensus        11 ~~~l~V~nl~~~~t~~~l~~~F~~~G~i~~v~~~~-----~~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~~~~~   85 (103)
T 2dgu_A           11 VKVLFVRNLANTVTEEILEKAFSQFGKLERVKKLK-----DYAFIHFDERDGAVKAMEEMNGKDLEGENIEIVFAKPPDQ   85 (103)
T ss_dssp             CCCEEEECCCTTCCHHHHHHHHHHHSCEEEEEECS-----SCEEEEESSHHHHHHHHHHHTTEEETTEEEEEEECCCCCC
T ss_pred             CCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEC-----CEEEEEeCCHHHHHHHHHHHCCCccCCCEEEEEEcCCCcc
Confidence            47999999999999999999999999999999973     49999999999999996 5999999999999998765443

>2nlw_A Eukaryotic translation initiation factor 3 subunit 9; eukaryotic initiation factor 3 complex, RNA recognition motif; NMR {Homo sapiens}

Probab=99.57  E-value=4.3e-15  Score=113.41  Aligned_cols=77  Identities=16%  Similarity=0.180  Sum_probs=68.3

Q ss_pred             CcEEEEeCCCCCC------CHHHHHHHhccCCCceEEEEeecCC-cCceEEEEecCHHHHHHHH-hcCCCeecCe-eEEE
Q 026156            5 GYVAEVVGLSPNA------TEKDIHEFFSHCGDPVHVEIIRSGE-CGGTAYVTFSNAYALETAV-LLSGATIVDQ-PVCI   75 (242)
Q Consensus         5 ~~tV~VsNLs~~~------TE~dLrefFs~~G~I~~V~l~~~~~-~~~~AfV~F~~~~aA~tAl-~Lng~~l~g~-~I~V   75 (242)
                      .++|||+|||+.+      |+++|+++|+.||.|.+|.|.+..+ +.++|||+|.++++|..|+ .|||..|+|+ +|.|
T Consensus        15 ~~~l~V~nLp~~~~~~~~~t~~~l~~~F~~~G~v~~v~i~~~~g~~~G~afV~f~~~~~A~~Ai~~l~g~~~~g~~~l~V   94 (105)
T 2nlw_A           15 DSVIVVDNVPQVGPDRLEKLKNVIHKIFSKFGKITNDFYPEEDGKTKGYIFLEYASPAHAVDAVKNADGYKLDKQHTFRV   94 (105)
T ss_dssp             CSEEEEESCCCCCTTTTTHHHHHHHHHHGGGSCEEEEECCCBTTBSCCEEEEEECSSSHHHHHHHHCSSEECSTTCEEEE
T ss_pred             CCEEEEeCCCcchhhhhHHHHHHHHHHHhcCCCEEEEEeeCCCCCeeeEEEEEECCHHHHHHHHHHhCCcccCCCceEEE
Confidence            4799999999999      7899999999999999999985444 3479999999999999995 6999999998 9999


Q ss_pred             EecCCC
Q 026156           76 IRWGEY   81 (242)
Q Consensus        76 ~~a~~~   81 (242)
                      ..+.+.
T Consensus        95 ~~a~~~  100 (105)
T 2nlw_A           95 NLFTDF  100 (105)
T ss_dssp             ECSCCC
T ss_pred             EEcchH
Confidence            977543

>1p1t_A Cleavage stimulation factor, 64 kDa subunit; RNA recognition motif, C-terminal helix, N-terminal helix, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1

Probab=99.57  E-value=5.5e-15  Score=111.44  Aligned_cols=75  Identities=17%  Similarity=0.230  Sum_probs=68.4

Q ss_pred             CcEEEEeCCCCCCCHHHHHHHhccCCCceEEEEeecCC---cCceEEEEecCHHHHHHHH-hcCCCeecCeeEEEEecC
Q 026156            5 GYVAEVVGLSPNATEKDIHEFFSHCGDPVHVEIIRSGE---CGGTAYVTFSNAYALETAV-LLSGATIVDQPVCIIRWG   79 (242)
Q Consensus         5 ~~tV~VsNLs~~~TE~dLrefFs~~G~I~~V~l~~~~~---~~~~AfV~F~~~~aA~tAl-~Lng~~l~g~~I~V~~a~   79 (242)
                      .++|||+|||+.+++++|+++|+.||.|.+|.+..+..   ..++|||+|.++++|+.|+ .|||..|.|+.|.|..+.
T Consensus         8 ~~~l~V~nlp~~~~~~~l~~~f~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~   86 (104)
T 1p1t_A            8 LRSVFVGNIPYEATEEQLKDIFSEVGPVVSFRLVYDRETGKPKGYGFCEYQDQETALSAMRNLNGREFSGRALRVDNAA   86 (104)
T ss_dssp             HSCEEEESCCTTSCHHHHHHHHHTTSCCSEEEEEEETTTTEEEEEEEEECSCHHHHHHHHHHSSSBSCSSSCBEEEETT
T ss_pred             ccEEEEeCCCCcCCHHHHHHHHHhcCCeeEEEEEeCCCCCccceEEEEEECCHHHHHHHHHHhCCCeeCCcEEEEEeCC
Confidence            37999999999999999999999999999999997743   2469999999999999996 699999999999999764

>1x4e_A RNA binding motif, single-stranded interacting protein 2; structural genomics, RRM domain, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1

Probab=99.57  E-value=1.4e-15  Score=110.86  Aligned_cols=75  Identities=24%  Similarity=0.353  Sum_probs=66.9

Q ss_pred             CCCcEEEEeCCCCCCCHHHHHHHhccCCCceEEEEeecCC---cCceEEEEecCHHHHHHHH-hcCCCeecCeeEEEEe
Q 026156            3 AGGYVAEVVGLSPNATEKDIHEFFSHCGDPVHVEIIRSGE---CGGTAYVTFSNAYALETAV-LLSGATIVDQPVCIIR   77 (242)
Q Consensus         3 ~~~~tV~VsNLs~~~TE~dLrefFs~~G~I~~V~l~~~~~---~~~~AfV~F~~~~aA~tAl-~Lng~~l~g~~I~V~~   77 (242)
                      +..++|||+|||+.+++++|+++|+.||+|.+|.+..+..   ..++|||+|.++++|+.|+ .|||..|.|+.|++..
T Consensus         3 ~~~~~l~v~nlp~~~t~~~l~~~f~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~~~~~~   81 (85)
T 1x4e_A            3 SGSSGLYIRGLQPGTTDQDLVKLCQPYGKIVSTKAILDKTTNKCKGYGFVDFDSPSAAQKAVTALKASGVQAQMAKQSG   81 (85)
T ss_dssp             CCCCEEEEESCCTTCCHHHHHTTSTTTSCEEEEEEECCSSSCSCCSEEEEEESCHHHHHHHHHHHHHHTCCEESCCSSC
T ss_pred             CCCcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCCcCcEEEEEECCHHHHHHHHHHhcCCeEeeEEEeecC
Confidence            4568999999999999999999999999999999997643   3469999999999999995 6999999999887753

>1h2v_Z 20 kDa nuclear CAP binding protein; CAP-binding-complex, RNP domain, MIF4G domain, RNA maturation, RNA export, nuclear protein, RNA-binding; 2.0A {Homo sapiens} SCOP: d.58.7.1 PDB: 1h2u_X* 1h2t_Z 1n52_B* 1n54_B 3fex_B 3fey_B 1h6k_X

Probab=99.57  E-value=1.8e-14  Score=116.71  Aligned_cols=80  Identities=21%  Similarity=0.231  Sum_probs=71.3

Q ss_pred             CCcEEEEeCCCCCCCHHHHHHHhccCCCceEEEEeecCC---cCceEEEEecCHHHHHHHH-hcCCCeecCeeEEEEecC
Q 026156            4 GGYVAEVVGLSPNATEKDIHEFFSHCGDPVHVEIIRSGE---CGGTAYVTFSNAYALETAV-LLSGATIVDQPVCIIRWG   79 (242)
Q Consensus         4 ~~~tV~VsNLs~~~TE~dLrefFs~~G~I~~V~l~~~~~---~~~~AfV~F~~~~aA~tAl-~Lng~~l~g~~I~V~~a~   79 (242)
                      ..++|||+|||+.+|+++|+++|+.||+|.+|.|+.+..   ..++|||+|.++++|+.|+ .|||..|.|+.|.|..+.
T Consensus        38 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a~  117 (156)
T 1h2v_Z           38 KSCTLYVGNLSFYTTEEQIYELFSKSGDIKKIIMGLDKMKKTACGFCFVEYYSRADAENAMRYINGTRLDDRIIRTDWDA  117 (156)
T ss_dssp             TCCEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHTTTSEETTEECEEEEES
T ss_pred             CCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEECC
Confidence            458999999999999999999999999999999998754   2369999999999999996 599999999999999886


Q ss_pred             CCCC
Q 026156           80 EYTD   83 (242)
Q Consensus        80 ~~~~   83 (242)
                      +...
T Consensus       118 ~~~~  121 (156)
T 1h2v_Z          118 GFKE  121 (156)
T ss_dssp             CCCT
T ss_pred             CCCC
Confidence            5443

>1wel_A RNA-binding protein 12; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1

Probab=99.57  E-value=2.4e-15  Score=117.91  Aligned_cols=76  Identities=18%  Similarity=0.249  Sum_probs=66.0

Q ss_pred             CCcEEEEeCCCCCCCHHHHHHHhccCCCceEEEEeecCC---cCceEEEEecCHHHHHHHHhcCCCeecCeeEEEEecC
Q 026156            4 GGYVAEVVGLSPNATEKDIHEFFSHCGDPVHVEIIRSGE---CGGTAYVTFSNAYALETAVLLSGATIVDQPVCIIRWG   79 (242)
Q Consensus         4 ~~~tV~VsNLs~~~TE~dLrefFs~~G~I~~V~l~~~~~---~~~~AfV~F~~~~aA~tAl~Lng~~l~g~~I~V~~a~   79 (242)
                      ..++|||+|||+.+|+++|++||+.||.|.++.++.+..   ..++|||+|.++++|+.|+.|||..|+|+.|.|..+.
T Consensus        24 ~~~~l~V~nLp~~~te~~l~~~F~~~G~v~~~~~~~~~~~g~~~G~afV~F~~~~~a~~Al~~~g~~~~gr~i~V~~a~  102 (124)
T 1wel_A           24 AGFCVYLKGLPFEAENKHVIDFFKKLDIVEDSIYIAYGPNGKATGEGFVEFRNEADYKAALCRHKQYMGNRFIQVHPIT  102 (124)
T ss_dssp             CCCEEEEECCCTTCCHHHHHHHSCSSCBCTTTCEEEECTTSSEEEEEEEEBSSSHHHHHHHTSCSBCSTTSCBEEEEEC
T ss_pred             CCcEEEEeCCCCCCCHHHHHHHHHhcCCccceEEEEECCCCCCCeEEEEEECCHHHHHHHHHhCCCeECCcEEEEEECC
Confidence            347999999999999999999999999998854443322   3479999999999999998899999999999998763

>1uaw_A Mouse-musashi-1; RNP-type structure, RNA binding protein; NMR {Mus musculus} SCOP: d.58.7.1

Probab=99.57  E-value=3.2e-15  Score=106.70  Aligned_cols=72  Identities=17%  Similarity=0.240  Sum_probs=64.5

Q ss_pred             cEEEEeCCCCCCCHHHHHHHhccCCCceEEEEeecCC---cCceEEEEecCHHHHHHHH-hcCCCeecCeeEEEEec
Q 026156            6 YVAEVVGLSPNATEKDIHEFFSHCGDPVHVEIIRSGE---CGGTAYVTFSNAYALETAV-LLSGATIVDQPVCIIRW   78 (242)
Q Consensus         6 ~tV~VsNLs~~~TE~dLrefFs~~G~I~~V~l~~~~~---~~~~AfV~F~~~~aA~tAl-~Lng~~l~g~~I~V~~a   78 (242)
                      ++|||+|||+.+++++|+++|+.||+|.+|.+..+..   ..++|||+|.++++|+.|+ .++ ..|+|++|.|..+
T Consensus         1 ~~l~v~nlp~~~t~~~l~~~F~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~a~~a~~~~~-~~~~g~~l~v~~a   76 (77)
T 1uaw_A            1 CKMFIGGLSWQTTQEGLREYFGQFGEVKECLVMRDPLTKRSRGFGFVTFMDQAGVDKVLAQSR-HELDSKTIDPKVA   76 (77)
T ss_dssp             CCEEEESCCSSCCSHHHHHHHTTTSCCCCEEEECCCCSSSCSSEEEECCCCTTHHHHHHHTTT-CCCSSCCCEEEEC
T ss_pred             CEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEecCCCCCCcCceEEEEEcCHHHHHHHHHhCC-CccCCEEEEEEec
Confidence            4799999999999999999999999999999997643   3479999999999999996 556 9999999999754

>2la4_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RNA recognition, stress granules, nucleus, RNA-binding, transcription; NMR {Saccharomyces cerevisiae}

Probab=99.57  E-value=7.6e-15  Score=110.46  Aligned_cols=73  Identities=12%  Similarity=0.109  Sum_probs=66.4

Q ss_pred             CCcEEEEeCCCCCCCHHHHHHHhccCCCceEEEEeecCCcCceEEEEecCHHHHHHHH-hcCCCeecCeeEEEEecC
Q 026156            4 GGYVAEVVGLSPNATEKDIHEFFSHCGDPVHVEIIRSGECGGTAYVTFSNAYALETAV-LLSGATIVDQPVCIIRWG   79 (242)
Q Consensus         4 ~~~tV~VsNLs~~~TE~dLrefFs~~G~I~~V~l~~~~~~~~~AfV~F~~~~aA~tAl-~Lng~~l~g~~I~V~~a~   79 (242)
                      ..++|||+|||+.+++++|+++|+.||.|.+|++.+.   .++|||+|.+.++|..|+ .|||..|+|+.|.|..+.
T Consensus        26 ~~~~l~V~nlp~~~~~~~l~~~f~~~G~i~~~~~~~~---~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a~   99 (101)
T 2la4_A           26 RVTTAYIGNIPHFATEADLIPLFQNFGFILDFKHYPE---KGCCFIKYDTHEQAAVCIVALANFPFQGRNLRTGWGK   99 (101)
T ss_dssp             SCCEEEEESCCTTCCHHHHHHHHHTTSCCSEEEEETT---TTEEEEECSSHHHHHHHHHHHTTCEETTEECCCCBCC
T ss_pred             CCCEEEEcCCCcccCHHHHHHHHHhCCCEEEEEEecC---CCEEEEEECCHHHHHHHHHHhCCCeECCeEEEEEecc
Confidence            3579999999999999999999999999999999843   479999999999999995 899999999999997653

>2ad9_A Polypyrimidine tract-binding protein 1; RBD, RRM, protein-RNA complex, RNA binding protein/RNA complex; NMR {Homo sapiens} SCOP: d.58.7.1

Probab=99.57  E-value=1.2e-14  Score=115.47  Aligned_cols=74  Identities=16%  Similarity=0.215  Sum_probs=66.5

Q ss_pred             CcEEEEeCCCCCCCHHHHHHHhccCCCceEEEEeecCCcCceEEEEecCHHHHHHHH-hcC--CCeecCeeEEEEecCCC
Q 026156            5 GYVAEVVGLSPNATEKDIHEFFSHCGDPVHVEIIRSGECGGTAYVTFSNAYALETAV-LLS--GATIVDQPVCIIRWGEY   81 (242)
Q Consensus         5 ~~tV~VsNLs~~~TE~dLrefFs~~G~I~~V~l~~~~~~~~~AfV~F~~~~aA~tAl-~Ln--g~~l~g~~I~V~~a~~~   81 (242)
                      .++|||+|||+.+||++|+++|+.||+|.+|.|+++   .++|||+|+++++|..|+ .|+  +..|.|++|.|..+...
T Consensus        31 s~~LfVgNLp~~vte~dL~~lF~~fG~V~~v~i~~~---kG~AFVeF~~~e~A~~Ai~~l~~~~~~l~Gr~l~V~~a~~k  107 (119)
T 2ad9_A           31 SRVIHIRKLPIDVTEGEVISLGLPFGKVTNLLMLKG---KNQAFIEMNTEEAANTMVNYYTSVTPVLRGQPIYIQFSNHK  107 (119)
T ss_dssp             CSEEEEESCCTTCCHHHHHHHHTTTSCCCEEEEEGG---GTEEEEECSCHHHHHHHHHHHHHHCCCBTTBCCEEEECSSS
T ss_pred             CCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEeCC---CCEEEEEECCHHHHHHHHHHhccCCceECCeEEEEEEccCC
Confidence            479999999999999999999999999999999975   479999999999999995 566  57899999999987543

>2fc9_A NCL protein; structure genomics, RRM_1 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.57  E-value=1.2e-14  Score=109.35  Aligned_cols=76  Identities=18%  Similarity=0.227  Sum_probs=65.1

Q ss_pred             CCCcEEEEeCCCCCCCHHHHHHHhccCCCceEEEEeec--CCcCceEEEEecCHHHHHHHH-hcCCCeecCeeEEEEecC
Q 026156            3 AGGYVAEVVGLSPNATEKDIHEFFSHCGDPVHVEIIRS--GECGGTAYVTFSNAYALETAV-LLSGATIVDQPVCIIRWG   79 (242)
Q Consensus         3 ~~~~tV~VsNLs~~~TE~dLrefFs~~G~I~~V~l~~~--~~~~~~AfV~F~~~~aA~tAl-~Lng~~l~g~~I~V~~a~   79 (242)
                      ...++|||+|||+.+|+++|+++|+.||.|   .++.+  +...++|||+|.++++|+.|+ .|||..|.|+.|.|..+.
T Consensus        13 ~~~~~l~V~nLp~~~t~~~l~~~F~~~g~v---~~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a~   89 (101)
T 2fc9_A           13 GESKTLVLSNLSYSATEETLQEVFEKATFI---KVPQNQNGKSKGYAFIEFASFEDAKEALNSCNKREIEGRAIRLELQG   89 (101)
T ss_dssp             CCCSEEEEESCCTTCCHHHHHHHCSSCSEE---ECCBCSSSCBCSEEEEECSSHHHHHHHHHHTSSEEETTEEEEEEECS
T ss_pred             CCCCEEEEeCCCCCCCHHHHHHHHHhCCEE---EEEECCCCCEeeEEEEEECCHHHHHHHHHHhCCCEeCCeEEEEEEcC
Confidence            345899999999999999999999999987   44443  234579999999999999996 599999999999999875


Q ss_pred             CC
Q 026156           80 EY   81 (242)
Q Consensus        80 ~~   81 (242)
                      +.
T Consensus        90 ~~   91 (101)
T 2fc9_A           90 PR   91 (101)
T ss_dssp             SC
T ss_pred             CC
Confidence            54

>2dhg_A TRNA selenocysteine associated protein (SECP43); RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.57  E-value=8.3e-15  Score=110.61  Aligned_cols=78  Identities=19%  Similarity=0.237  Sum_probs=69.2

Q ss_pred             CCcEEEEeCCCCCCCHHHHHHHhcc-CCCceEEEEeecCC--cCceEEEEecCHHHHHHHH-hcCCCe-ecCeeEEEEec
Q 026156            4 GGYVAEVVGLSPNATEKDIHEFFSH-CGDPVHVEIIRSGE--CGGTAYVTFSNAYALETAV-LLSGAT-IVDQPVCIIRW   78 (242)
Q Consensus         4 ~~~tV~VsNLs~~~TE~dLrefFs~-~G~I~~V~l~~~~~--~~~~AfV~F~~~~aA~tAl-~Lng~~-l~g~~I~V~~a   78 (242)
                      ..++|||+|||+.+|+++|+++|+. ||.|.+|.|+.+..  ..++|||+|.++++|..|+ .|||.. |.|+.|.|..+
T Consensus         8 ~~~~l~V~nLp~~~t~~~l~~~F~~~~G~v~~v~i~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~~g~~l~v~~a   87 (104)
T 2dhg_A            8 PEYSLFVGDLTPDVDDGMLYEFFVKVYPSCRGGKVVLDQTGVSKGYGFVKFTDELEQKRALTECQGAVGLGSKPVRLSVA   87 (104)
T ss_dssp             CCCCEEEECCCTTCCHHHHHHHHHHHCTTEEEEEEEECTTCCEEEEEEEEESCHHHHHHHHHHTTTCCSSSSSCCCCCBC
T ss_pred             CCcEEEEeCCCCCCCHHHHHHHHHHhCCCeEEEEEEECCCCCccceEEEEECCHHHHHHHHHHccCCcccCCEeEEEEEc
Confidence            3579999999999999999999999 99999999997742  2469999999999999995 599999 99999999877


Q ss_pred             CCC
Q 026156           79 GEY   81 (242)
Q Consensus        79 ~~~   81 (242)
                      .+.
T Consensus        88 ~~~   90 (104)
T 2dhg_A           88 IPK   90 (104)
T ss_dssp             CCC
T ss_pred             cCC
Confidence            543

>2jvo_A Nucleolar protein 3; nucleus, phosphorylation, ribonucleoprotein, ribosome biogenesis, RNA-binding, rRNA processing; NMR {Saccharomyces cerevisiae} PDB: 2osq_A

Probab=99.57  E-value=1.4e-14  Score=111.57  Aligned_cols=72  Identities=22%  Similarity=0.340  Sum_probs=66.6

Q ss_pred             CCcEEEEeCCCCCCCHHHHHHHhccCCCceEEEEeecCCcCceEEEEecCHHHHHHHH-hcCCCeecCeeEEEEecCC
Q 026156            4 GGYVAEVVGLSPNATEKDIHEFFSHCGDPVHVEIIRSGECGGTAYVTFSNAYALETAV-LLSGATIVDQPVCIIRWGE   80 (242)
Q Consensus         4 ~~~tV~VsNLs~~~TE~dLrefFs~~G~I~~V~l~~~~~~~~~AfV~F~~~~aA~tAl-~Lng~~l~g~~I~V~~a~~   80 (242)
                      ..++|||+|||+.+|+++|+++|+.||.|.+|.+.     .++|||+|.+.++|+.|+ .|||..|+|+.|.|..+..
T Consensus        30 ~~~~l~V~nLp~~~t~~~L~~~F~~~G~i~~v~i~-----kg~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a~~  102 (108)
T 2jvo_A           30 SNTRLFVRPFPLDVQESELNEIFGPFGPMKEVKIL-----NGFAFVEFEEAESAAKAIEEVHGKSFANQPLEVVYSKL  102 (108)
T ss_dssp             SCSEEEECSSCTTCCHHHHHHHHTTTSCCCEEEEE-----TTEEEEECSSHHHHHHHHHHHTTCEETTEECEEESCSC
T ss_pred             CCCEEEEECCCCCCCHHHHHHHHHhcCCEEEEEEE-----CCEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEEecC
Confidence            35799999999999999999999999999999998     479999999999999995 6999999999999997643

>3ex7_B RNA-binding protein 8A; protein-RNA complex, mRNA processing, mRNA splicing, mRNA transport, nonsense-mediated mRNA decay, nucleus; HET: ADP; 2.30A {Homo sapiens} PDB: 2j0q_D*

Probab=99.57  E-value=8.2e-15  Score=114.44  Aligned_cols=79  Identities=23%  Similarity=0.358  Sum_probs=70.4

Q ss_pred             CCCcEEEEeCCCCCCCHHHHHHHhccCCCceEEEEeecCC---cCceEEEEecCHHHHHHHH-hcCCCeecCeeEEEEec
Q 026156            3 AGGYVAEVVGLSPNATEKDIHEFFSHCGDPVHVEIIRSGE---CGGTAYVTFSNAYALETAV-LLSGATIVDQPVCIIRW   78 (242)
Q Consensus         3 ~~~~tV~VsNLs~~~TE~dLrefFs~~G~I~~V~l~~~~~---~~~~AfV~F~~~~aA~tAl-~Lng~~l~g~~I~V~~a   78 (242)
                      ...++|||+|||+.+|+++|+++|+.||.|.+|.|+.+..   ..++|||+|.++++|+.|+ .|||..|.|+.|.|..+
T Consensus        20 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a   99 (126)
T 3ex7_B           20 VEGWILFVTGVHEEATEEDIHDKFAEYGEIKNIHLNLDRRTGYLKGYTLVEYETYKEAQAAMEGLNGQDLMGQPISVDWC   99 (126)
T ss_dssp             SSSEEEEEESCCTTCCHHHHHHHHHTTSCEEEEECCBCTTTSSBCSCEEEEESSHHHHHHHHHHHTTCBSSSSBCEEEES
T ss_pred             CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHhCCCeeCCeEEEEEEe
Confidence            3457999999999999999999999999999999987643   3469999999999999996 79999999999999977


Q ss_pred             CCC
Q 026156           79 GEY   81 (242)
Q Consensus        79 ~~~   81 (242)
                      ...
T Consensus       100 ~~~  102 (126)
T 3ex7_B          100 FVR  102 (126)
T ss_dssp             EES
T ss_pred             cCC
Confidence            543

>2e44_A Insulin-like growth factor 2 mRNA binding protein 3; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.57  E-value=4.9e-15  Score=110.35  Aligned_cols=76  Identities=13%  Similarity=0.136  Sum_probs=67.4

Q ss_pred             CcEEEEeCCCCCCCHHHHHHHhccCCCceEEE-EeecCCcCceEEEEecCHHHHHHHH-hcCCCeecCeeEEEEecCCC
Q 026156            5 GYVAEVVGLSPNATEKDIHEFFSHCGDPVHVE-IIRSGECGGTAYVTFSNAYALETAV-LLSGATIVDQPVCIIRWGEY   81 (242)
Q Consensus         5 ~~tV~VsNLs~~~TE~dLrefFs~~G~I~~V~-l~~~~~~~~~AfV~F~~~~aA~tAl-~Lng~~l~g~~I~V~~a~~~   81 (242)
                      .++|||+|||+.+++++|+++|+.||.|.+|+ ++.+... +.|||+|.++++|..|+ .|||..|+|+.|.|..+.+.
T Consensus        15 ~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~~~~i~~~~~~-~~afV~f~~~~~a~~Ai~~l~g~~~~g~~l~V~~a~~~   92 (96)
T 2e44_A           15 IRKLQIRNIPPHLQWEVLDSLLVQYGVVESCEQVNTDSET-AVVNVTYSSKDQARQALDKLNGFQLENFTLKVAYIPDE   92 (96)
T ss_dssp             CCCEEEEEECSSSCHHHHHHHHHHHSCEEEEEEECCSSSS-EEEEEEESSHHHHHHHHHHHTTCBCSSCBCEEEECCCC
T ss_pred             CCEEEEEcCCCCCCHHHHHHHHHhcCCeEEEEEeecCCCC-CEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEEcCcc
Confidence            57899999999999999999999999999995 7766543 34999999999999996 69999999999999977543

>1wf1_A RNA-binding protein RALY; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 1wf2_A

Probab=99.56  E-value=1.4e-14  Score=110.91  Aligned_cols=71  Identities=24%  Similarity=0.290  Sum_probs=66.0

Q ss_pred             CcEEEEeCCCCC-CCHHHHHHHhccCCCceEEEEeecCCcCceEEEEecCHHHHHHHH-hcCCCeecCeeEEEEecCC
Q 026156            5 GYVAEVVGLSPN-ATEKDIHEFFSHCGDPVHVEIIRSGECGGTAYVTFSNAYALETAV-LLSGATIVDQPVCIIRWGE   80 (242)
Q Consensus         5 ~~tV~VsNLs~~-~TE~dLrefFs~~G~I~~V~l~~~~~~~~~AfV~F~~~~aA~tAl-~Lng~~l~g~~I~V~~a~~   80 (242)
                      .++|||+|||+. +++++|+++|+.||.|.+|.+     ..++|||+|.++++|+.|+ .|||..|.|+.|.|..+.+
T Consensus        27 ~~~l~V~nl~~~~~t~~~l~~~F~~~G~v~~v~i-----~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~a~~   99 (110)
T 1wf1_A           27 NSRVFIGNLNTALVKKSDVETIFSKYGRVAGCSV-----HKGYAFVQYSNERHARAAVLGENGRVLAGQTLDINMAGE   99 (110)
T ss_dssp             SSEEEECSCCCSSCCHHHHHHHHGGGSCCSEEEE-----ETTEEEEECSSSHHHHHHHHHHTTCEETTEECCEEESCC
T ss_pred             CcEEEEeCCCcccCCHHHHHHHHHhCCCeEEEEE-----eCCEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEECCC
Confidence            379999999999 999999999999999999999     2579999999999999996 9999999999999998754

>2kvi_A Nuclear polyadenylated RNA-binding protein 3; RNA-binding motif, RRM, transcription termination, NUC phosphoprotein; NMR {Saccharomyces cerevisiae}

Probab=99.56  E-value=8.8e-15  Score=109.63  Aligned_cols=73  Identities=15%  Similarity=0.200  Sum_probs=67.0

Q ss_pred             CCcEEEEeCCCC-CCCHHHHHHHhccCCCceEEEEeecCCcCceEEEEecCHHHHHHHH-hcCCCeecCeeEEEEecCCC
Q 026156            4 GGYVAEVVGLSP-NATEKDIHEFFSHCGDPVHVEIIRSGECGGTAYVTFSNAYALETAV-LLSGATIVDQPVCIIRWGEY   81 (242)
Q Consensus         4 ~~~tV~VsNLs~-~~TE~dLrefFs~~G~I~~V~l~~~~~~~~~AfV~F~~~~aA~tAl-~Lng~~l~g~~I~V~~a~~~   81 (242)
                      ..++|||+|||+ .+++++|+++|+.||.|.+|.+.     .++|||+|.++++|..|+ .|||..|.|+.|.|..+...
T Consensus         9 ~~~~l~V~nlp~~~~t~~~l~~~F~~~G~v~~v~i~-----~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~a~~~   83 (96)
T 2kvi_A            9 PKSRLFIGNLPLKNVSKEDLFRIFSPYGHIMQINIK-----NAFGFIQFDNPQSVRDAIECESQEMNFGKKLILEVSSSN   83 (96)
T ss_dssp             CCEEEEEESSTTSCCCHHHHHHHHTTTCCCCEEEEE-----TTEEEEEESCHHHHHHHHHHHTCSSCBTTTBCEEEEECC
T ss_pred             CCCEEEEeCCCcccCCHHHHHHHHHhcCCEEEEEEe-----CCEEEEEECCHHHHHHHHHHcCCCeeCCcEEEEEEcCcC
Confidence            458999999999 99999999999999999999995     479999999999999995 59999999999999987544

>2xnq_A Nuclear polyadenylated RNA-binding protein 3; transcription termination, RNA processi recognition, RRM; HET: CAF; 1.30A {Saccharomyces cerevisiae} PDB: 2xnr_A 2l41_A

Probab=99.56  E-value=2.2e-14  Score=108.28  Aligned_cols=72  Identities=15%  Similarity=0.200  Sum_probs=66.2

Q ss_pred             CCCcEEEEeCCCC-CCCHHHHHHHhccCCCceEEEEeecCCcCceEEEEecCHHHHHHHH-hcCCCeecCeeEEEEecC
Q 026156            3 AGGYVAEVVGLSP-NATEKDIHEFFSHCGDPVHVEIIRSGECGGTAYVTFSNAYALETAV-LLSGATIVDQPVCIIRWG   79 (242)
Q Consensus         3 ~~~~tV~VsNLs~-~~TE~dLrefFs~~G~I~~V~l~~~~~~~~~AfV~F~~~~aA~tAl-~Lng~~l~g~~I~V~~a~   79 (242)
                      +..++|||+||++ .+++++|+++|+.||.|.+|.+.     .++|||+|.++++|..|+ .|||..|+|+.|.|..+.
T Consensus        20 ~~~~~l~V~nLp~~~~t~~~L~~~F~~~G~v~~v~i~-----~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a~   93 (97)
T 2xnq_A           20 HMKSRLFIGNLPLKNVSKEDLFRIFSPYGHIMQINIK-----NAFGFIQFDNPQSVRDAIEXESQEMNFGKKLILEVSS   93 (97)
T ss_dssp             CTTCEEEEESCCSSCCCHHHHHHHHGGGSCEEEEEEC-----SSEEEEEESSHHHHHHHHHHHTTSEETTEECEEEECC
T ss_pred             CCCCEEEEeCCCcccCCHHHHHHHHHhcCCEEEEEEe-----CCEEEEEECCHHHHHHHHHHcCCCEECCEEEEEEecC
Confidence            4468999999999 99999999999999999999995     579999999999999995 599999999999998764

>1u6f_A Tcubp1, RNA-binding protein UBP1; trypanosome, mRNA-binding protein, GU-rich RNA, structure; NMR {Trypanosoma cruzi} SCOP: d.58.7.1

Probab=99.56  E-value=2e-14  Score=114.06  Aligned_cols=79  Identities=18%  Similarity=0.227  Sum_probs=70.7

Q ss_pred             CcEEEEeCCCCCCCHHHHHHHhccCCCceEEEEeecCCc---CceEEEEecCHHHHHHHH-hcCCCeecCeeEEEEecCC
Q 026156            5 GYVAEVVGLSPNATEKDIHEFFSHCGDPVHVEIIRSGEC---GGTAYVTFSNAYALETAV-LLSGATIVDQPVCIIRWGE   80 (242)
Q Consensus         5 ~~tV~VsNLs~~~TE~dLrefFs~~G~I~~V~l~~~~~~---~~~AfV~F~~~~aA~tAl-~Lng~~l~g~~I~V~~a~~   80 (242)
                      .++|||+||++.+++++|+++|+.||+|.+|.|+.+..+   .++|||+|.++++|..|+ .|||..|.|+.|.|..+.+
T Consensus        42 ~~~l~V~nLp~~~~~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~~  121 (139)
T 1u6f_A           42 LRNLMVNYIPTTVDEVQLRQLFERYGPIESVKIVCDRETRQSRGYGFVKFQSGSSAQQAIAGLNGFNILNKRLKVALAAS  121 (139)
T ss_dssp             TSEEEEESCSTTCCHHHHHHHHHHHSCEEEEEEEEETTTTEEEEEEEEEESSHHHHHHHHHHTTTEECSSCEEEEEESSC
T ss_pred             CCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEEcCCCCCcceEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEECCC
Confidence            479999999999999999999999999999999987542   469999999999999996 5999999999999998765


Q ss_pred             CCC
Q 026156           81 YTD   83 (242)
Q Consensus        81 ~~~   83 (242)
                      ...
T Consensus       122 ~~~  124 (139)
T 1u6f_A          122 GHQ  124 (139)
T ss_dssp             CCC
T ss_pred             CCC
Confidence            433

>3n9u_C Cleavage and polyadenylation specificity factor S; protein-protein complex, coexpression, heterotetramer, mRNA maturation, mRNA cleavage; 1.92A {Homo sapiens}

Probab=99.56  E-value=1.5e-14  Score=119.00  Aligned_cols=75  Identities=17%  Similarity=0.182  Sum_probs=67.7

Q ss_pred             CcEEEEeCCCCCCCHHHHHHHhccCC--CceEEEEeecCC---cCceEEEEecCHHHHHHHH-hcCCCeecCeeEEEEec
Q 026156            5 GYVAEVVGLSPNATEKDIHEFFSHCG--DPVHVEIIRSGE---CGGTAYVTFSNAYALETAV-LLSGATIVDQPVCIIRW   78 (242)
Q Consensus         5 ~~tV~VsNLs~~~TE~dLrefFs~~G--~I~~V~l~~~~~---~~~~AfV~F~~~~aA~tAl-~Lng~~l~g~~I~V~~a   78 (242)
                      .++|||+||++.+|+++|+++|+.||  .|.+|.|+.+..   ..+||||+|.++++|+.|+ .|||..|+|+.|.|..+
T Consensus        55 ~~~lfVgnLp~~~te~~L~~~F~~~G~i~v~~v~i~~d~~tg~skGfaFV~f~~~~~A~~Ai~~lng~~~~Gr~l~V~~a  134 (156)
T 3n9u_C           55 RAAVYVGSFSWWTTDQQLIQVIRSIGVYDVVELKFAENRANGQSKGYAEVVVASENSVHKLLELLPGKVLNGEKVDVRPA  134 (156)
T ss_dssp             -CEEEEECCCTTCCHHHHHHHHHHTTCCCEEEEEEEECTTTCCEEEEEEEEESCHHHHHHHHHHSTTCEETTEECEEEEC
T ss_pred             CCEEEEeCCCCCCCHHHHHHHHHHHCCccEEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHcCCCEECCeEeEEEEc
Confidence            47999999999999999999999999  999999998743   3469999999999999994 78999999999999976


Q ss_pred             C
Q 026156           79 G   79 (242)
Q Consensus        79 ~   79 (242)
                      .
T Consensus       135 ~  135 (156)
T 3n9u_C          135 T  135 (156)
T ss_dssp             C
T ss_pred             C
Confidence            3

>2ku7_A MLL1 PHD3-CYP33 RRM chimeric protein; transcriptional regulation, RRM domain, transcr; NMR {Homo sapiens}

Probab=99.56  E-value=1.3e-14  Score=114.47  Aligned_cols=74  Identities=23%  Similarity=0.271  Sum_probs=67.5

Q ss_pred             CCcEEEEeCCCCCCCHHHHHHHhccCCCceEEEEeecCC---cCceEEEEecCHHHHHHHH-hcCCCeecCeeEEEEe
Q 026156            4 GGYVAEVVGLSPNATEKDIHEFFSHCGDPVHVEIIRSGE---CGGTAYVTFSNAYALETAV-LLSGATIVDQPVCIIR   77 (242)
Q Consensus         4 ~~~tV~VsNLs~~~TE~dLrefFs~~G~I~~V~l~~~~~---~~~~AfV~F~~~~aA~tAl-~Lng~~l~g~~I~V~~   77 (242)
                      ..++|||+|||+.+++++|+++|+.||+|.+|.+..+..   ..++|||+|.++++|+.|+ .|||..|+|+.|.|..
T Consensus        62 ~~~~l~v~nlp~~~~~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~  139 (140)
T 2ku7_A           62 TKRVLYVGGLAEEVDDKVLHAAFIPFGDITDIQIPLDYETEKHRGFAFVEFELAEDAAAAIDNMNESELFGRTIRVNL  139 (140)
T ss_dssp             SCCEEEEECCCTTCCHHHHHHHHGGGSCEEEEECCCCTTTCCCCSEEEEEESCHHHHHHHHHHSTEEEETTEEEEEEC
T ss_pred             CCcEEEEEeCCCCCCHHHHHHHHHhcCCEEEEEEeecCCCCCcCcEEEEEECCHHHHHHHHHHhCCCEECCEEEEEEe
Confidence            357999999999999999999999999999999987633   3579999999999999996 7999999999999974

>2e5j_A Methenyltetrahydrofolate synthetase domain containing; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.55  E-value=1.2e-14  Score=108.97  Aligned_cols=74  Identities=15%  Similarity=0.165  Sum_probs=66.0

Q ss_pred             CcEEEEeCCCCCCCHHHHHHHhccCCCceEEEEeecCCcCceEEEEecCHHHHHHHH-hcCCCeecCeeEEEEecCC
Q 026156            5 GYVAEVVGLSPNATEKDIHEFFSHCGDPVHVEIIRSGECGGTAYVTFSNAYALETAV-LLSGATIVDQPVCIIRWGE   80 (242)
Q Consensus         5 ~~tV~VsNLs~~~TE~dLrefFs~~G~I~~V~l~~~~~~~~~AfV~F~~~~aA~tAl-~Lng~~l~g~~I~V~~a~~   80 (242)
                      .++|||+|||+.+++++|+++|+.||.|. +.++.+ ...++|||+|.++++|+.|+ .|||..|.|+.|.|..+.+
T Consensus        19 ~~~l~V~nL~~~~t~~~l~~~F~~~G~v~-~~~~~~-~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a~~   93 (97)
T 2e5j_A           19 AADVYVGNLPRDARVSDLKRALRELGSVP-LRLTWQ-GPRRRAFLHYPDSAAAQQAVSCLQGLRLGTDTLRVALARQ   93 (97)
T ss_dssp             CCEEEEECCCTTCCHHHHHHHHHHTTCCC-SEEEEE-TTTTEEEEECSSHHHHHHHHHHHTTCCSSSSCCEEEECCC
T ss_pred             CCEEEEeCCCCcCcHHHHHHHHHhcCCEE-EEEEcC-CCCcEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEEcCC
Confidence            57999999999999999999999999997 676654 33579999999999999995 8999999999999997653

>2kn4_A Immunoglobulin G-binding protein G, splicing FACT arginine/serine-rich 2, S35, splicing factor SC35,; RRM domain, cell WALL; NMR {Streptococcus SP}

Probab=99.55  E-value=1.5e-14  Score=116.91  Aligned_cols=77  Identities=19%  Similarity=0.187  Sum_probs=69.8

Q ss_pred             CcEEEEeCCCCCCCHHHHHHHhccCCCceEEEEeecCC---cCceEEEEecCHHHHHHHH-hcCCCeecCeeEEEEecCC
Q 026156            5 GYVAEVVGLSPNATEKDIHEFFSHCGDPVHVEIIRSGE---CGGTAYVTFSNAYALETAV-LLSGATIVDQPVCIIRWGE   80 (242)
Q Consensus         5 ~~tV~VsNLs~~~TE~dLrefFs~~G~I~~V~l~~~~~---~~~~AfV~F~~~~aA~tAl-~Lng~~l~g~~I~V~~a~~   80 (242)
                      .++|||+|||+.+++++|+++|+.||.|.+|.|..+..   ..++|||+|.++++|+.|+ .|||..|+|++|.|..+.+
T Consensus        70 ~~~l~v~nl~~~~~~~~l~~~F~~~G~v~~~~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~~  149 (158)
T 2kn4_A           70 MTSLKVDNLTYRTSPDTLRRVFEKYGRVGDVYIPRDRYTKESRGFAFVRFHDKRDAEDAMDAMDGAVLDGRELRVQMARY  149 (158)
T ss_dssp             CCEEEEESCCTTCCHHHHHHHHHHHSCEEEEECCCCSSCTTSCCEEEEEESBHHHHHHHHHHSTTEESSSSEEEEEEECC
T ss_pred             CCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeecCCCCccceEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEECCC
Confidence            47999999999999999999999999999999997642   3579999999999999996 6999999999999998764


Q ss_pred             C
Q 026156           81 Y   81 (242)
Q Consensus        81 ~   81 (242)
                      .
T Consensus       150 ~  150 (158)
T 2kn4_A          150 G  150 (158)
T ss_dssp             S
T ss_pred             C
Confidence            3

>2dis_A Unnamed protein product; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1

Probab=99.55  E-value=1.4e-14  Score=110.16  Aligned_cols=81  Identities=15%  Similarity=0.166  Sum_probs=69.4

Q ss_pred             CCCcEEEEeCCCCCCCHHHHHHHhccCCC-ceEEEEe-ecCC---cCceEEEEecCHHHHHHHH-hcC--CCeecCeeEE
Q 026156            3 AGGYVAEVVGLSPNATEKDIHEFFSHCGD-PVHVEII-RSGE---CGGTAYVTFSNAYALETAV-LLS--GATIVDQPVC   74 (242)
Q Consensus         3 ~~~~tV~VsNLs~~~TE~dLrefFs~~G~-I~~V~l~-~~~~---~~~~AfV~F~~~~aA~tAl-~Ln--g~~l~g~~I~   74 (242)
                      +..++|||+|||+.+++++|+++|+.||. |.+|.++ .+..   ..++|||+|.++++|..|+ .||  +..|.|+.|.
T Consensus         6 ~~~~~l~V~nLp~~~t~~~l~~~f~~~G~~v~~v~i~~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~~g~~~~~g~~l~   85 (109)
T 2dis_A            6 SGNCRLFIGGIPKMKKREEILEEIAKVTEGVLDVIVYASAADKMKNRGFAFVEYESHRAAAMARRKLMPGRIQLWGHQIA   85 (109)
T ss_dssp             CCSEEEEEECCCTTSCHHHHHHHHHHHSTTEEEEECCSSSCTTTTTCCEEEEEESSHHHHHHHHTTTTTCCSCBTTBCCE
T ss_pred             cCCCEEEEeCCCCcCCHHHHHHHHHHhcCCceEEEEEccCCCCCCcCcEEEEEecCHHHHHHHHHHhhCCCceecCCeEE
Confidence            44689999999999999999999999998 9999998 5543   3479999999999999996 575  4899999999


Q ss_pred             EEecCCCCC
Q 026156           75 IIRWGEYTD   83 (242)
Q Consensus        75 V~~a~~~~~   83 (242)
                      |..+.+...
T Consensus        86 V~~a~~~~~   94 (109)
T 2dis_A           86 VDWAEPEID   94 (109)
T ss_dssp             EEESCSSCS
T ss_pred             EEEcCCCCC
Confidence            998765433

>1whx_A Hypothetical protein riken cDNA 1200009A02; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1

Probab=99.55  E-value=1.4e-14  Score=112.06  Aligned_cols=73  Identities=22%  Similarity=0.170  Sum_probs=66.8

Q ss_pred             CcEEEEeCCCCCCCHHHHHHHhccCCCceEEEEeecCCcCceEEEEecCHHHHHHHH-hcCCCeecCeeEEEEecCC
Q 026156            5 GYVAEVVGLSPNATEKDIHEFFSHCGDPVHVEIIRSGECGGTAYVTFSNAYALETAV-LLSGATIVDQPVCIIRWGE   80 (242)
Q Consensus         5 ~~tV~VsNLs~~~TE~dLrefFs~~G~I~~V~l~~~~~~~~~AfV~F~~~~aA~tAl-~Lng~~l~g~~I~V~~a~~   80 (242)
                      .++|||+|||+.+++++|+++|+.||.|.+|.|...   .++|||+|.++++|+.|+ .|||..|.|++|.|..+..
T Consensus        10 ~~~l~V~nLp~~~te~~L~~~F~~~G~i~~v~i~~~---~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a~~   83 (111)
T 1whx_A           10 KTVILAKNLPAGTLAAEIQETFSRFGSLGRVLLPEG---GITAIVEFLEPLEARKAFRHLAYSKFHHVPLYLEWAPI   83 (111)
T ss_dssp             EEEEEEESCCTTCCHHHHHHHHHTTSCEEEEECCSS---SSCEEEEESCHHHHHHHHHHHTTCBSSSSBCEEEEEET
T ss_pred             CCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEeCC---CCEEEEEeCCHHHHHHHHHHhCCCEECCeEEEEEECCC
Confidence            479999999999999999999999999999998753   469999999999999995 7999999999999997754

>1wex_A Hypothetical protein (riken cDNA 2810036L13); structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.58.7.1

Probab=99.55  E-value=2.2e-14  Score=110.66  Aligned_cols=74  Identities=22%  Similarity=0.193  Sum_probs=65.3

Q ss_pred             CcEEEEeCCCCCCCHHHHHHHhccCCCceEEEEeecCCcCceEEEEecCHHHHHHHH-hcCC--CeecCeeEEEEecCCC
Q 026156            5 GYVAEVVGLSPNATEKDIHEFFSHCGDPVHVEIIRSGECGGTAYVTFSNAYALETAV-LLSG--ATIVDQPVCIIRWGEY   81 (242)
Q Consensus         5 ~~tV~VsNLs~~~TE~dLrefFs~~G~I~~V~l~~~~~~~~~AfV~F~~~~aA~tAl-~Lng--~~l~g~~I~V~~a~~~   81 (242)
                      .++|||+|||+.++|++|+++|+.||+|.+|.|+++   .++|||+|+++++|..|+ .|++  ..|.|++|.|..+...
T Consensus        15 ~~~l~V~nLp~~~te~~L~~~F~~fG~V~~v~i~~~---kg~aFVef~~~~~A~~Ai~~l~~~~~~i~Gr~l~V~~a~~~   91 (104)
T 1wex_A           15 SPVVHVRGLCESVVEADLVEALEKFGTICYVMMMPF---KRQALVEFENIDSAKECVTFAADVPVYIAGQQAFFNYSTSK   91 (104)
T ss_dssp             CSEEEEESCCSSCCHHHHHHHHTTTSCEEEEEEETT---TTEEEEEESSHHHHHHHHHHHHHSCCBSSSSBCEEEECSSS
T ss_pred             CCEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEECC---CCEEEEEECCHHHHHHHHHHhccCCceECCEEEEEEEccCc
Confidence            479999999999999999999999999999999864   479999999999999995 4654  5699999999987543

>2kxn_B Transformer-2 protein homolog beta; SR protein, RRM, splicing factor, RNA protein complex, SMN, binding protein-RNA complex; NMR {Homo sapiens} PDB: 2rra_A 2rrb_A

Probab=99.55  E-value=9.9e-15  Score=116.10  Aligned_cols=77  Identities=26%  Similarity=0.293  Sum_probs=68.9

Q ss_pred             CCcEEEEeCCCCCCCHHHHHHHhccCCCceEEEEeecCC---cCceEEEEecCHHHHHHHH-hcCCCeecCeeEEEEecC
Q 026156            4 GGYVAEVVGLSPNATEKDIHEFFSHCGDPVHVEIIRSGE---CGGTAYVTFSNAYALETAV-LLSGATIVDQPVCIIRWG   79 (242)
Q Consensus         4 ~~~tV~VsNLs~~~TE~dLrefFs~~G~I~~V~l~~~~~---~~~~AfV~F~~~~aA~tAl-~Lng~~l~g~~I~V~~a~   79 (242)
                      ..++|||+|||+.+++++|+++|+.||+|.+|.|+.+..   ..++|||+|.++++|+.|+ .|||..|+|+.|.|..+.
T Consensus        45 ~~~~l~V~nLp~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~~G~afV~F~~~~~A~~Ai~~lng~~i~g~~l~V~~a~  124 (129)
T 2kxn_B           45 PNCCLGVFGLSLYTTERDLREVFSKYGPIADVSIVYDQQSRRSRGFAFVYFENVDDAKEAKERANGMELDGRRIRVDFSI  124 (129)
T ss_dssp             CSSCBCEETCTTSCCHHHHHHHHTTTSCEEEEEEECCSSSSCCCCEEEEEESCHHHHHHHHHHHTTCCSSSSCCEESCCS
T ss_pred             CCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHhCCCEECCEEEEEEEec
Confidence            347899999999999999999999999999999997643   3479999999999999996 599999999999998664


Q ss_pred             C
Q 026156           80 E   80 (242)
Q Consensus        80 ~   80 (242)
                      +
T Consensus       125 ~  125 (129)
T 2kxn_B          125 T  125 (129)
T ss_dssp             S
T ss_pred             C
Confidence            3

>2cqh_A IGF-II mRNA-binding protein 2 isoform A; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1

Probab=99.54  E-value=2.3e-14  Score=106.21  Aligned_cols=74  Identities=19%  Similarity=0.206  Sum_probs=65.6

Q ss_pred             CCcEEEEeCCCCCCCHHHHHHHhccCCC-ceEEEEeecCCcCceEEEEecCHHHHHHHH-hcCC-CeecCeeEEEEecCC
Q 026156            4 GGYVAEVVGLSPNATEKDIHEFFSHCGD-PVHVEIIRSGECGGTAYVTFSNAYALETAV-LLSG-ATIVDQPVCIIRWGE   80 (242)
Q Consensus         4 ~~~tV~VsNLs~~~TE~dLrefFs~~G~-I~~V~l~~~~~~~~~AfV~F~~~~aA~tAl-~Lng-~~l~g~~I~V~~a~~   80 (242)
                      ..++|||+|||+.+|+++|+++|+.||. |..+.+..    .++|||+|.++++|+.|+ .||| ..|+|+.|.|..+.+
T Consensus         7 ~~~~l~V~nLp~~~t~~~l~~~F~~~G~vv~~~~~~~----~g~afV~f~~~~~A~~A~~~l~g~~~~~g~~l~v~~a~~   82 (93)
T 2cqh_A            7 GMNKLYIGNLSPAVTADDLRQLFGDRKLPLAGQVLLK----SGYAFVDYPDQNWAIRAIETLSGKVELHGKIMEVDYSVS   82 (93)
T ss_dssp             CCCCEEEECCCTTCCHHHHHHHHHHTTCCCSSCEEEE----TTEEEECCSCHHHHHHHHHHHTTTCEETTEECEEEECCC
T ss_pred             CCcEEEEeCCCCCCCHHHHHHHHHHcCCceEEEEEcC----CCEEEEEECCHHHHHHHHHHccCCeeECCEEEEEEEccC
Confidence            4579999999999999999999999999 77777643    479999999999999995 6999 999999999998754


Q ss_pred             C
Q 026156           81 Y   81 (242)
Q Consensus        81 ~   81 (242)
                      .
T Consensus        83 ~   83 (93)
T 2cqh_A           83 K   83 (93)
T ss_dssp             C
T ss_pred             c
Confidence            3

>1fjc_A Nucleolin RBD2, protein C23; RNP, RRM, RNA binding domain, nucleolus, structural protein; NMR {Mesocricetus auratus} SCOP: d.58.7.1

Probab=99.54  E-value=1.1e-14  Score=108.34  Aligned_cols=74  Identities=27%  Similarity=0.326  Sum_probs=65.0

Q ss_pred             CcEEEEeCCCCCCCHHHHHHHhccCCCceEEEEeecCCcCceEEEEecCHHHHHHHH-hcCCCeecCeeEEEEecCC
Q 026156            5 GYVAEVVGLSPNATEKDIHEFFSHCGDPVHVEIIRSGECGGTAYVTFSNAYALETAV-LLSGATIVDQPVCIIRWGE   80 (242)
Q Consensus         5 ~~tV~VsNLs~~~TE~dLrefFs~~G~I~~V~l~~~~~~~~~AfV~F~~~~aA~tAl-~Lng~~l~g~~I~V~~a~~   80 (242)
                      .++|||+|||+.+++++|+++|+.||.|..+  ...+...++|||+|.++++|..|+ .|||..|.|+.|.|..+.+
T Consensus        16 ~~~l~V~nL~~~~t~~~l~~~F~~~g~v~~~--~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~~   90 (96)
T 1fjc_A           16 ARTLLAKNLSFNITEDELKEVFEDALEIRLV--SQDGKSKGIAYIEFKSEADAEKNLEEKQGAEIDGRSVSLYYTGE   90 (96)
T ss_dssp             GGEEEEESCCSSCCHHHHHHHHCSEEEECCE--EETTEEEEEEEEEESSHHHHHHHHHHTTEEEETTEEEEEEECSS
T ss_pred             CCEEEEeCCCCCCCHHHHHHHHhhCCcEEEe--CCCCCcceEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEEcCC
Confidence            4799999999999999999999999999887  333334579999999999999996 5999999999999997754

>2a3j_A U1 small nuclear ribonucleoprotein A; computationally designed protein, RRM, U1A, RNA binding protein; NMR {Homo sapiens}

Probab=99.54  E-value=1.6e-14  Score=115.35  Aligned_cols=76  Identities=18%  Similarity=0.328  Sum_probs=68.1

Q ss_pred             CcEEEEeCCCCCCCHHHHH----HHhccCCCceEEEEeecCCcCceEEEEecCHHHHHHHH-hcCCCeecCeeEEEEecC
Q 026156            5 GYVAEVVGLSPNATEKDIH----EFFSHCGDPVHVEIIRSGECGGTAYVTFSNAYALETAV-LLSGATIVDQPVCIIRWG   79 (242)
Q Consensus         5 ~~tV~VsNLs~~~TE~dLr----efFs~~G~I~~V~l~~~~~~~~~AfV~F~~~~aA~tAl-~Lng~~l~g~~I~V~~a~   79 (242)
                      .++|||+|||+.+++++|+    ++|+.||+|.+|.+...+...++|||+|.++++|..|+ .|||..|.|++|.|..+.
T Consensus        29 ~~~LfV~nL~~~~~e~~L~~~L~~~F~~~G~I~~v~i~~~~~~rG~aFV~F~~~~~A~~Ai~~lng~~l~gr~l~V~~a~  108 (127)
T 2a3j_A           29 SQVVLITNINPEVPKEKLQALLYALASSQGDILDIVVDLSDDNSGKAYIVFATQESAQAFVEAFQGYPFQGNPLVITFSE  108 (127)
T ss_dssp             CSEEEEESCCTTSCHHHHHHHHHHHHHHHSCEEEEEECCCCSSCCCEEEEESSHHHHHHHHHHSTTCCCTTSCCEEEECC
T ss_pred             CCEEEEeCCCCCCCHHHHHHHHHHHhccCCCeEEEEeccCCCcCCEEEEEECCHHHHHHHHHHHCCCEeCCCEEEEEEcc
Confidence            4799999999999999876    69999999999998765555689999999999999995 899999999999999764


Q ss_pred             C
Q 026156           80 E   80 (242)
Q Consensus        80 ~   80 (242)
                      .
T Consensus       109 ~  109 (127)
T 2a3j_A          109 T  109 (127)
T ss_dssp             C
T ss_pred             C
Confidence            3

>2dha_A FLJ20171 protein; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.54  E-value=7.3e-15  Score=116.83  Aligned_cols=76  Identities=16%  Similarity=0.187  Sum_probs=67.1

Q ss_pred             CCcEEEEeCCCCCCCHHHHHHHhccCCCc----eEEEEeecCC--cCceEEEEecCHHHHHHHHhcCCCeecCeeEEEEe
Q 026156            4 GGYVAEVVGLSPNATEKDIHEFFSHCGDP----VHVEIIRSGE--CGGTAYVTFSNAYALETAVLLSGATIVDQPVCIIR   77 (242)
Q Consensus         4 ~~~tV~VsNLs~~~TE~dLrefFs~~G~I----~~V~l~~~~~--~~~~AfV~F~~~~aA~tAl~Lng~~l~g~~I~V~~   77 (242)
                      ..++|||+|||+++|+++|++||+.||.|    .+|.|+.+..  ..++|||+|.++++|+.|+..|+..|+|+.|.|.+
T Consensus        22 ~~~~v~V~nLp~~~te~dl~~~F~~~g~v~g~v~~v~i~~d~~gr~~G~aFV~F~~~~~A~~Al~~~~~~l~gR~i~V~~  101 (123)
T 2dha_A           22 NQVIVRMRGLPFTATAEEVVAFFGQHCPITGGKEGILFVTYPDGRPTGDAFVLFACEEYAQNALRKHKDLLGKRYIELFR  101 (123)
T ss_dssp             SCCEEEECSCCTTCCHHHHHHHHHTTSCCTTGGGGEEEEECTTSCEEEEEEECCSSHHHHHHHHTTTTEESSSCEECCEE
T ss_pred             CCCEEEEeCCCCCCCHHHHHHHHHhhCCccCCcceEEEEECCCCCEeeEEEEEECCHHHHHHHHHhCCCeeCCeEEEEEE
Confidence            45799999999999999999999999875    6899987632  34799999999999999988899999999999987


Q ss_pred             cC
Q 026156           78 WG   79 (242)
Q Consensus        78 a~   79 (242)
                      +.
T Consensus       102 a~  103 (123)
T 2dha_A          102 ST  103 (123)
T ss_dssp             EC
T ss_pred             CC
Confidence            63

>2i2y_A Fusion protein consists of immunoglobin G- binding protein G and splicing factor,...; protein-RNA complex RRM alpha-beta sandwich BETA1-alpha1- BETA2-BETA3-alpha2-BETA4; NMR {Streptococcus SP} PDB: 2i38_A

Probab=99.54  E-value=1.2e-14  Score=117.12  Aligned_cols=74  Identities=23%  Similarity=0.214  Sum_probs=68.1

Q ss_pred             CCcEEEEeCCCCCCCHHHHHHHhccCCCceEEEEeecCCcCceEEEEecCHHHHHHHH-hcCCCeecCeeEEEEecC
Q 026156            4 GGYVAEVVGLSPNATEKDIHEFFSHCGDPVHVEIIRSGECGGTAYVTFSNAYALETAV-LLSGATIVDQPVCIIRWG   79 (242)
Q Consensus         4 ~~~tV~VsNLs~~~TE~dLrefFs~~G~I~~V~l~~~~~~~~~AfV~F~~~~aA~tAl-~Lng~~l~g~~I~V~~a~   79 (242)
                      ..++|||+|||+.+|+++|+++|+.||.|.+|++.++  +.++|||+|.++++|..|+ .|||..|.|++|.|..+.
T Consensus        72 ~~~~l~V~nl~~~~t~~~l~~~F~~~G~i~~v~i~~~--~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~  146 (150)
T 2i2y_A           72 LDCKVYVGNLGNNGNKTELERAFGYYGPLRSVWVARN--PPGFAFVEFEDPRDAADAVRELDGRTLCGCRVRVELSN  146 (150)
T ss_dssp             TSCEEEEESCCSCCSCHHHHHHHHHHSCEEEEEECSS--SCSEEEEEESSHHHHHHHHHHHSSSCSSSSCCEEEECC
T ss_pred             CCCEEEEeCCCCCCCHHHHHHHHHhhCCEEEEEEeeC--CCcEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEEcC
Confidence            3579999999999999999999999999999999876  3579999999999999996 699999999999998764

>2hgn_A Heterogeneous nuclear ribonucleoprotein F; RNA recognition motif, G-tract, G-quadruplex, alternative splicing, RNA binding protein; NMR {Homo sapiens} PDB: 2kg1_A

Probab=99.54  E-value=4.2e-15  Score=120.64  Aligned_cols=77  Identities=27%  Similarity=0.296  Sum_probs=68.7

Q ss_pred             CCcEEEEeCCCCCCCHHHHHHHhccCCCceEEEEeecCC--cCceEEEEecCHHHHHHHHhcCCCeecCeeEEEEecCCC
Q 026156            4 GGYVAEVVGLSPNATEKDIHEFFSHCGDPVHVEIIRSGE--CGGTAYVTFSNAYALETAVLLSGATIVDQPVCIIRWGEY   81 (242)
Q Consensus         4 ~~~tV~VsNLs~~~TE~dLrefFs~~G~I~~V~l~~~~~--~~~~AfV~F~~~~aA~tAl~Lng~~l~g~~I~V~~a~~~   81 (242)
                      ..++|||+|||+++||++|++||+.|| |.+|.|+.+..  ..++|||+|.++++|+.|+.+|+..|+|+.|.|..+...
T Consensus        45 ~~~~lfV~nLp~~~te~dL~~~F~~~G-i~~v~i~~d~~g~srGfaFV~F~~~e~A~~Al~~~g~~l~gR~i~V~~a~~~  123 (139)
T 2hgn_A           45 TGHCVHMRGLPYKATENDIYNFFSPLN-PVRVHIEIGPDGRVTGEADVEFATHEEAVAAMSKDRANMQHRYIELFLNSTT  123 (139)
T ss_dssp             CCCCEECCSCCTTCCHHHHHHHHCSCC-CSEEECCCSSSSCSSCCCEEECSHHHHHHHHTTCCSCSSSSCCCCCEECCCS
T ss_pred             CCCEEEEeCCCCCCCHHHHHHHHHhcC-CeEEEEEECCCCCCceEEEEEeCCHHHHHHHHhhCCCEECCEEEEEEECCCC
Confidence            347899999999999999999999999 77999987643  357999999999999999999999999999999877543

>3md3_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RNP, RBD, poly(U) binding, tandem, acetylation, cytopla nucleus; 2.70A {Saccharomyces cerevisiae}

Probab=99.53  E-value=2.8e-14  Score=113.68  Aligned_cols=77  Identities=21%  Similarity=0.199  Sum_probs=69.5

Q ss_pred             cEEEEeCCCCCCCHHHHHHHhccCCCceEEEEeecCC--cCceEEEEecCHHHHHHHH-hcCCCeecCeeEEEEecCCCC
Q 026156            6 YVAEVVGLSPNATEKDIHEFFSHCGDPVHVEIIRSGE--CGGTAYVTFSNAYALETAV-LLSGATIVDQPVCIIRWGEYT   82 (242)
Q Consensus         6 ~tV~VsNLs~~~TE~dLrefFs~~G~I~~V~l~~~~~--~~~~AfV~F~~~~aA~tAl-~Lng~~l~g~~I~V~~a~~~~   82 (242)
                      ++|||+|||+++|+++|+++|+.||+|.+|.+..+..  ..++|||+|.++++|..|+ .|||..+.|+.|.|..+.+..
T Consensus         1 R~l~V~nlp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~g~afV~f~~~~~a~~A~~~l~~~~~~g~~i~v~~~~~~~   80 (166)
T 3md3_A            1 RVLYVGNLDKAITEDILKQYFQVGGPIANIKIMIDKNNKNVNYAFVEYHQSHDANIALQTLNGKQIENNIVKINWAFQSQ   80 (166)
T ss_dssp             CEEEEEEEETTCCHHHHHHHHGGGSCEEEEEEECCCC-CCEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECCCCC
T ss_pred             CEEEECCCCCcCCHHHHHHHHHhcCCeEEEEEEECCCCCCCCEEEEEeCCHHHHHHHHHHcCCCccCCCeeEEEEcCCCC
Confidence            5899999999999999999999999999999997643  3469999999999999996 999999999999999775443

>2xs2_A Deleted in azoospermia-like; RNA binding protein-RNA complex; 1.35A {Mus musculus} PDB: 2xs7_A 2xs5_A 2xsf_A

Probab=99.53  E-value=1.7e-14  Score=108.72  Aligned_cols=75  Identities=21%  Similarity=0.258  Sum_probs=68.0

Q ss_pred             CcEEEEeCCCCCCCHHHHHHHhccCCCceEEEEeecCC--cCceEEEEecCHHHHHHHHhcCCCeecCeeEEEEecCC
Q 026156            5 GYVAEVVGLSPNATEKDIHEFFSHCGDPVHVEIIRSGE--CGGTAYVTFSNAYALETAVLLSGATIVDQPVCIIRWGE   80 (242)
Q Consensus         5 ~~tV~VsNLs~~~TE~dLrefFs~~G~I~~V~l~~~~~--~~~~AfV~F~~~~aA~tAl~Lng~~l~g~~I~V~~a~~   80 (242)
                      .++|||+|||+.+++++|+++|+.||.|.+|.+..+..  ..++|||+|.++++|+.|+. +|..|.|+.|.|..+..
T Consensus         9 ~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~g~~~g~afV~f~~~~~a~~Ai~-~~~~~~g~~l~v~~a~~   85 (102)
T 2xs2_A            9 PNTVFVGGIDVRMDETEIRSFFARYGSVKEVKIITDRTGVSKGYGFVSFYNDVDVQKIVE-SQINFHGKKLKLGPAIR   85 (102)
T ss_dssp             EEEEEEECCCTTCCHHHHHHHHGGGSCEEEEEEEECTTSCEEEEEEEEESSCCCHHHHTT-CCCEETTEECEEEEEEE
T ss_pred             CCEEEEeCCCCCCCHHHHHHHHHhCCCeEEEEEEECCCCCccceEEEEECCHHHHHHHHh-CCCeECCEEEEEEECCc
Confidence            37999999999999999999999999999999998752  24799999999999999988 99999999999987753

>3r27_A HnRNP L, heterogeneous nuclear ribonucleoprotein L; RBD fold, protein binding, nucleus; 2.04A {Homo sapiens}

Probab=99.53  E-value=3.6e-14  Score=109.53  Aligned_cols=72  Identities=19%  Similarity=0.211  Sum_probs=64.9

Q ss_pred             CcEEEEeCCCCCCCHHHHHHHhccCCCceEEEEeecCCcCceEEEEecCHHHHHHH-HhcCCCe--ecCeeEEEEecC
Q 026156            5 GYVAEVVGLSPNATEKDIHEFFSHCGDPVHVEIIRSGECGGTAYVTFSNAYALETA-VLLSGAT--IVDQPVCIIRWG   79 (242)
Q Consensus         5 ~~tV~VsNLs~~~TE~dLrefFs~~G~I~~V~l~~~~~~~~~AfV~F~~~~aA~tA-l~Lng~~--l~g~~I~V~~a~   79 (242)
                      .++|||+|||+.+||++|+++|+.||+|.+|.+++.   .++|||+|++.++|..| ..|||..  |.|++|.|..+.
T Consensus        21 s~~l~V~NLp~~~te~~L~~lF~~fG~V~~v~i~~~---kg~AFVef~~~~~A~~Av~~ln~~~~~i~Gr~i~V~~S~   95 (100)
T 3r27_A           21 SPVVHIRGLIDGVVEADLVEALQEFGPISYVVVMPK---KRQALVEFEDVLGACNAVNYAADNQIYIAGHPAFVNYST   95 (100)
T ss_dssp             CSEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEETT---TTEEEEEESSHHHHHHHHHHHHHSCEEETTEEEEEEECS
T ss_pred             CcEEEEeCCCCCCCHHHHHHHHhccCCEEEEEEEcC---CCEEEEEECCHHHHHHHHHHhcCCCceeCCcEEEEEecc
Confidence            479999999999999999999999999999999864   46999999999999999 4788775  889999998754

>3d2w_A TAR DNA-binding protein 43; DP-43 proteinopathy, TDP-43 inclusions, RNA recognition MOTI U, ALS, RRM; HET: DNA; 1.65A {Mus musculus}

Probab=99.53  E-value=3.3e-14  Score=105.93  Aligned_cols=70  Identities=24%  Similarity=0.344  Sum_probs=61.2

Q ss_pred             CcEEEEeCCCCCCCHHHHHHHhccCCCceEEEEeecCCcCceEEEEecCHHHHHHHHhcCCCee--cCeeEEEEecC
Q 026156            5 GYVAEVVGLSPNATEKDIHEFFSHCGDPVHVEIIRSGECGGTAYVTFSNAYALETAVLLSGATI--VDQPVCIIRWG   79 (242)
Q Consensus         5 ~~tV~VsNLs~~~TE~dLrefFs~~G~I~~V~l~~~~~~~~~AfV~F~~~~aA~tAl~Lng~~l--~g~~I~V~~a~   79 (242)
                      .++|||+|||+++||++|+++|+.||+|.+|.|+.+  +.+||||+|.++++|+.   ++|..+  .|+.|.|..+.
T Consensus        11 ~~~l~V~~Lp~~~te~~L~~~F~~~G~i~~v~i~~~--srGfaFV~F~~~~~A~~---~~~~~~~~~g~~v~v~~a~   82 (89)
T 3d2w_A           11 GSKVFVGRCTEDMTAEELQQFFCQYGEVVDVFIPKP--FRAFAFVTFADDKVAQS---LCGEDLIIKGISVHISNAE   82 (89)
T ss_dssp             CCEEEEESCCTTCCHHHHHHHHTTTSCEEEEECCSS--CCSEEEEEESCHHHHHH---HTTCEEEETTEEEEEEECC
T ss_pred             CCEEEEeCCCCCCCHHHHHHHHhccCCEEEEEEeeC--CCCEEEEEECCHHHHHH---HcCCCcccCCEEEEEEEcC
Confidence            479999999999999999999999999999999875  45799999999999884   556554  59999998764

>1wf0_A TDP-43, TAR DNA-binding protein-43; structural genomics, RRM domain, riken structural genomics/proteomics initiative RSGI, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1

Probab=99.53  E-value=2.5e-14  Score=105.22  Aligned_cols=74  Identities=26%  Similarity=0.252  Sum_probs=62.2

Q ss_pred             CCcEEEEeCCCCCCCHHHHHHHhccCCCceEEEEeecCCcCceEEEEecCHHHHHHHHhcCCCeecCeeEEEEecCC
Q 026156            4 GGYVAEVVGLSPNATEKDIHEFFSHCGDPVHVEIIRSGECGGTAYVTFSNAYALETAVLLSGATIVDQPVCIIRWGE   80 (242)
Q Consensus         4 ~~~tV~VsNLs~~~TE~dLrefFs~~G~I~~V~l~~~~~~~~~AfV~F~~~~aA~tAl~Lng~~l~g~~I~V~~a~~   80 (242)
                      ..++|||+|||+.+++++|+++|+.||.|.+|.+..+  ..++|||+|.++++|+.+... +..+.|+.|.|..+.+
T Consensus         4 ~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~--~~g~afV~f~~~~~a~~~~~~-~~~~~g~~l~v~~a~~   77 (88)
T 1wf0_A            4 GSSGVFVGRCTGDMTEDELREFFSQYGDVMDVFIPKP--FRAFAFVTFADDQIAQSLCGE-DLIIKGISVHISNAEP   77 (88)
T ss_dssp             CCCEEEEESCCSSSCHHHHHHHSTTTSCCCEEECCSS--CCSCCEEECSCHHHHHHTTTC-EEEETTEEEEEECCCC
T ss_pred             CCcEEEEeCCCCCCCHHHHHHHHHHcCCeeEEEEecC--CCCEEEEEECCHHHHHHHhcC-CceeCCEEEEEEecCC
Confidence            4589999999999999999999999999999999865  457999999999999764222 3455899999987643

>2hgm_A HNRPF protein, heterogeneous nuclear ribonucleoprotein F; RNA recognition motif, G-tract, G-quadruplex, alternative splicing, RNA binding protein; NMR {Homo sapiens} PDB: 2kg0_A

Probab=99.53  E-value=1.4e-14  Score=115.85  Aligned_cols=74  Identities=22%  Similarity=0.260  Sum_probs=66.2

Q ss_pred             CcEEEEeCCCCCCCHHHHHHHhccCCCce--EEEEeecCC--cCceEEEEecCHHHHHHHHhcCCCeecCeeEEEEecC
Q 026156            5 GYVAEVVGLSPNATEKDIHEFFSHCGDPV--HVEIIRSGE--CGGTAYVTFSNAYALETAVLLSGATIVDQPVCIIRWG   79 (242)
Q Consensus         5 ~~tV~VsNLs~~~TE~dLrefFs~~G~I~--~V~l~~~~~--~~~~AfV~F~~~~aA~tAl~Lng~~l~g~~I~V~~a~   79 (242)
                      .++|||+|||+++||++|++||+.| .|.  +|.|+.+..  ..+||||+|.++++|+.|+.+++..|+|+.|.|.++.
T Consensus        42 ~~~lfVgnLp~~~te~dL~~~F~~~-~i~~~~v~i~~d~~GrsrGfaFV~F~~~e~A~~Al~~~~~~l~gR~I~V~~a~  119 (126)
T 2hgm_A           42 DGFVRLRGLPFGCTKEEIVQFFSGL-EIVPNGITLPVDPEGKITGEAFVQFASQELAEKALGKHKERIGHRYIEVFKSS  119 (126)
T ss_dssp             CCEEEEECCCTTCCHHHHHHHTTTS-CEEEEEEECCCCSSSSSCSEEEEEESSTTHHHHHHTTTTCCBTTBCCCCEEEC
T ss_pred             CCEEEEeCCCCCCCHHHHHHHHhcC-CceeeEEEEEECCCCCCceEEEEEECCHHHHHHHHHHCCCEECCEEEEEEECC
Confidence            4799999999999999999999999 577  899986643  4579999999999999998889999999999998763

>1wg1_A KIAA1579 protein, homolog EXC-7; RBD, structural genomics, riken structural genomics/proteomics initiative, RSGI, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 1wi6_A

Probab=99.53  E-value=4.9e-14  Score=103.91  Aligned_cols=74  Identities=15%  Similarity=0.181  Sum_probs=66.3

Q ss_pred             CCCcEEEEeCCCCCCCHHHHHHHhccCCCceEEEEeecCCcCceEEEEecCHHHHHHHH-hcCCCeecCeeEEEEecCC
Q 026156            3 AGGYVAEVVGLSPNATEKDIHEFFSHCGDPVHVEIIRSGECGGTAYVTFSNAYALETAV-LLSGATIVDQPVCIIRWGE   80 (242)
Q Consensus         3 ~~~~tV~VsNLs~~~TE~dLrefFs~~G~I~~V~l~~~~~~~~~AfV~F~~~~aA~tAl-~Lng~~l~g~~I~V~~a~~   80 (242)
                      ...++|||+|||+.+++++|+++|+.| .|.+|.+.   ...++|||+|.++++|+.|+ .|||..++|++|.|..+..
T Consensus         3 ~~~~~l~V~nLp~~~t~~~l~~~F~~~-~v~~~~i~---~~~g~afV~f~~~~~a~~Ai~~l~g~~~~g~~l~V~~a~~   77 (88)
T 1wg1_A            3 SGSSGILVKNLPQDSNCQEVHDLLKDY-DLKYCYVD---RNKRTAFVTLLNGEQAQNAIQMFHQYSFRGKDLIVQLQPT   77 (88)
T ss_dssp             CCCCCEEEESCCSSCCHHHHHHHTCSS-CCCCEEEE---GGGTEEEECCSCHHHHHHHHHHHTTEEETTEEEEEEECCC
T ss_pred             CCCCEEEEeCCCCCCCHHHHHHHHhhC-CeEEEEEe---CCCcEEEEEECCHHHHHHHHHHhCCCeECCcEEEEEEcCC
Confidence            345799999999999999999999999 99999985   33579999999999999995 6999999999999997643

>1fj7_A Nucleolin RBD1, protein C23; RNP, RRM, RNA binding domain, nucleolus, structural protein; NMR {Mesocricetus auratus} SCOP: d.58.7.1

Probab=99.53  E-value=5e-15  Score=111.48  Aligned_cols=76  Identities=18%  Similarity=0.194  Sum_probs=66.0

Q ss_pred             CCcEEEEeCCCCCCCHHHHHHHhccCCCceEEEEeec---CCcCceEEEEecCHHHHHHHHhcCCCeecCeeEEEEecCC
Q 026156            4 GGYVAEVVGLSPNATEKDIHEFFSHCGDPVHVEIIRS---GECGGTAYVTFSNAYALETAVLLSGATIVDQPVCIIRWGE   80 (242)
Q Consensus         4 ~~~tV~VsNLs~~~TE~dLrefFs~~G~I~~V~l~~~---~~~~~~AfV~F~~~~aA~tAl~Lng~~l~g~~I~V~~a~~   80 (242)
                      ..++|||+|||+.+|+++|+++|+.||.|.. .++.+   +...+||||+|.++++|+.|+.|||..|.|+.|.|..+.+
T Consensus        16 ~~~~l~V~nLp~~~t~~~l~~~F~~~G~v~~-~~~~~~~~g~~~g~afV~f~~~~~a~~A~~l~g~~~~g~~l~V~~a~~   94 (101)
T 1fj7_A           16 TPFNLFIGNLNPNKSVAELKVAISELFAKND-LAVVDVRTGTNRKFGYVDFESAEDLEKALELTGLKVFGNEIKLEKPKG   94 (101)
T ss_dssp             CSEEEEEECCCTTSCHHHHHHHHHHHHHHHT-CCCCEEEEETTTTEEEEEESSHHHHHHHHHGGGCCBTTBCCEEECCSC
T ss_pred             CCCEEEEeCCCCCCCHHHHHHHHHHhCCcce-EEEecCCCCCcCcEEEEEECCHHHHHHHHhcCCcEECCcEEEEEEcCC
Confidence            3579999999999999999999999999988 44433   2345799999999999999977999999999999997654

>1fxl_A Paraneoplastic encephalomyelitis antigen HUD; protein-RNA complex, AU-rich element, transcription/RNA complex; 1.80A {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 1g2e_A 1fnx_H 1d8z_A 1d9a_A 3hi9_A

Probab=99.52  E-value=6.4e-14  Score=111.67  Aligned_cols=76  Identities=17%  Similarity=0.239  Sum_probs=68.8

Q ss_pred             CcEEEEeCCCCCCCHHHHHHHhccCCCceEEEEeecCC---cCceEEEEecCHHHHHHHH-hcCCCeecCeeEEEEecCC
Q 026156            5 GYVAEVVGLSPNATEKDIHEFFSHCGDPVHVEIIRSGE---CGGTAYVTFSNAYALETAV-LLSGATIVDQPVCIIRWGE   80 (242)
Q Consensus         5 ~~tV~VsNLs~~~TE~dLrefFs~~G~I~~V~l~~~~~---~~~~AfV~F~~~~aA~tAl-~Lng~~l~g~~I~V~~a~~   80 (242)
                      .++|||+|||+.+++++|+++|+.||+|.+|.++++..   ..++|||+|.++++|..|+ .|||..+.|++|.|..+.+
T Consensus         2 ~~~l~v~nlp~~~~~~~l~~~f~~~G~i~~v~~~~~~~~~~~~g~afV~f~~~~~A~~a~~~l~~~~~~g~~l~v~~~~~   81 (167)
T 1fxl_A            2 KTNLIVNYLPQNMTQEEFRSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKAINTLNGLRLQTKTIKVSYARP   81 (167)
T ss_dssp             CSEEEEESCCTTCCHHHHHHHHHTTSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECCC
T ss_pred             cceEEEcCCCCCCCHHHHHHHHHhcCCeEEEEEEeCCCCCcceeEEEEEECCHHHHHHHHHHcCCCccCCceEEEEecCC
Confidence            37999999999999999999999999999999998753   2369999999999999996 5999999999999987654

>3beg_B Splicing factor, arginine/serine-rich 1; kinase, SR protein kinase, SR protein, PRE-mRNA splicing, at binding, chromosome partition; HET: SEP ANP; 2.90A {Homo sapiens} SCOP: d.58.7.1 PDB: 2o3d_A 1wg4_A

Probab=99.52  E-value=1.2e-14  Score=112.95  Aligned_cols=73  Identities=22%  Similarity=0.330  Sum_probs=64.7

Q ss_pred             CCcEEEEeCCCCCCCHHHHHHHhccCCCceEEEEeecCCcCceEEEEecCHHHHHHHH-hcCCCeecCee-----EEEEe
Q 026156            4 GGYVAEVVGLSPNATEKDIHEFFSHCGDPVHVEIIRSGECGGTAYVTFSNAYALETAV-LLSGATIVDQP-----VCIIR   77 (242)
Q Consensus         4 ~~~tV~VsNLs~~~TE~dLrefFs~~G~I~~V~l~~~~~~~~~AfV~F~~~~aA~tAl-~Lng~~l~g~~-----I~V~~   77 (242)
                      ..++|||+|||+.+++++|+++|+.||+|.+|.|+.+    ++|||+|.++++|+.|+ .|||..|+|+.     |.|..
T Consensus        15 ~~~~l~V~nLp~~~t~~~l~~~F~~~G~v~~~~i~~~----g~afV~f~~~~~a~~Ai~~l~g~~~~gr~~~~~~i~v~~   90 (115)
T 3beg_B           15 SENRVVVSGLPPSGSWQDLKDHMREAGDVCYADVYRD----GTGVVEFVRKEDMTYAVRKLDNTKFRSHEGETAYIRVKV   90 (115)
T ss_dssp             --CCEEEEECCSSCCTTHHHHHHGGGSCEEEEEECTT----SEEEEEESSHHHHHHHHHHHTTCBCCCTTSCCCBCEEEE
T ss_pred             CCcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEecC----CEEEEEECCHHHHHHHHHHhCCCEECCcEeeeEEEEecc
Confidence            3478999999999999999999999999999999865    79999999999999995 59999999988     77776


Q ss_pred             cCC
Q 026156           78 WGE   80 (242)
Q Consensus        78 a~~   80 (242)
                      ..+
T Consensus        91 ~~~   93 (115)
T 3beg_B           91 DGP   93 (115)
T ss_dssp             CC-
T ss_pred             CCC
Confidence            543

>2cpx_A Hypothetical protein FLJ11016; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1

Probab=99.52  E-value=4.6e-14  Score=108.30  Aligned_cols=77  Identities=23%  Similarity=0.365  Sum_probs=66.6

Q ss_pred             CCcEEEEeCCCCCCCHHHHHHHhccCCCc----eEEEEeecCCcCceEEEEecCHHHHHHHH-hcCCCeecCeeEEEEec
Q 026156            4 GGYVAEVVGLSPNATEKDIHEFFSHCGDP----VHVEIIRSGECGGTAYVTFSNAYALETAV-LLSGATIVDQPVCIIRW   78 (242)
Q Consensus         4 ~~~tV~VsNLs~~~TE~dLrefFs~~G~I----~~V~l~~~~~~~~~AfV~F~~~~aA~tAl-~Lng~~l~g~~I~V~~a   78 (242)
                      ..++|||+|||+.+|+++|+++|+.||.|    ..+.+. .+...++|||+|.+.++|..|+ .|||..|.|+.|.|..+
T Consensus        24 ~~~~l~V~nLp~~~t~~~l~~~f~~~G~v~~~~~~~~~~-~g~~~g~afV~f~~~~~a~~Ai~~l~g~~~~g~~l~v~~a  102 (115)
T 2cpx_A           24 PNKVLYLKNLSPRVTERDLVSLFARFQEKKGPPIQFRMM-TGRMRGQAFITFPNKEIAWQALHLVNGYKLYGKILVIEFG  102 (115)
T ss_dssp             CCSEEEEECCCTTCCHHHHHHHTHHHHHSSSSCCEEEEE-CSSSCSEEEEECSSHHHHHHHHHHSTTCBCSSCBCEEEEC
T ss_pred             CCCEEEEeCCCCCCCHHHHHHHHHHhCCccceEEEEEcC-CCccceEEEEEECCHHHHHHHHHHhCCCEeCCcEEEEEEc
Confidence            34799999999999999999999999999    566655 3334579999999999999996 69999999999999987


Q ss_pred             CCC
Q 026156           79 GEY   81 (242)
Q Consensus        79 ~~~   81 (242)
                      .+.
T Consensus       103 ~~~  105 (115)
T 2cpx_A          103 KNK  105 (115)
T ss_dssp             CCC
T ss_pred             cCC
Confidence            543

>1x5o_A RNA binding motif, single-stranded interacting protein 1; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1

Probab=99.51  E-value=6.8e-14  Score=107.37  Aligned_cols=76  Identities=14%  Similarity=0.272  Sum_probs=66.1

Q ss_pred             CCcEEEEeCCCCCCCHHHHHHHhccCCCceEEEEeecCC--cCceEEEEecCHHHHHHHH-hcCCCee--------cCee
Q 026156            4 GGYVAEVVGLSPNATEKDIHEFFSHCGDPVHVEIIRSGE--CGGTAYVTFSNAYALETAV-LLSGATI--------VDQP   72 (242)
Q Consensus         4 ~~~tV~VsNLs~~~TE~dLrefFs~~G~I~~V~l~~~~~--~~~~AfV~F~~~~aA~tAl-~Lng~~l--------~g~~   72 (242)
                      ..++|||+|||+.+++++|+++|+.||.|.+|.|+.+..  ..++|||+|.++++|..|+ .|||..|        .+++
T Consensus        24 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~i~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~~~~~~~~~~~~  103 (114)
T 1x5o_A           24 DPTNLYISNLPLSMDEQELENMLKPFGQVISTRILRDSSGTSRGVGFARMESTEKCEAVIGHFNGKFIKTPPGVSAPTEP  103 (114)
T ss_dssp             CTTEEEEESCCTTCCHHHHHHTTTTTSCEEEEEEEECSSSCEEEEEEEEESCHHHHHHHHHHHBTCCCCCCTTSCCCSSC
T ss_pred             CCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEECCCCCcceEEEEEECCHHHHHHHHHHhCCCEEcCCccccCCCCc
Confidence            457999999999999999999999999999999998742  2469999999999999995 6999999        4667


Q ss_pred             EEEEecC
Q 026156           73 VCIIRWG   79 (242)
Q Consensus        73 I~V~~a~   79 (242)
                      |.|..+.
T Consensus       104 l~v~~a~  110 (114)
T 1x5o_A          104 LLCKFSG  110 (114)
T ss_dssp             BEEEECC
T ss_pred             eeEEccC
Confidence            7777554

>1rk8_A CG8781-PA, CG8781-PA protein; mRNA processing, RRM, RBD, NMD, oskar mRNA localization, translation; 1.90A {Drosophila melanogaster} SCOP: d.58.7.1 PDB: 1hl6_A 2x1g_A

Probab=99.51  E-value=7e-14  Score=114.71  Aligned_cols=77  Identities=22%  Similarity=0.281  Sum_probs=68.8

Q ss_pred             CCcEEEEeCCCCCCCHHHHHHHhccCCCceEEEEeecCC---cCceEEEEecCHHHHHHHH-hcCCCeecCeeEEEEecC
Q 026156            4 GGYVAEVVGLSPNATEKDIHEFFSHCGDPVHVEIIRSGE---CGGTAYVTFSNAYALETAV-LLSGATIVDQPVCIIRWG   79 (242)
Q Consensus         4 ~~~tV~VsNLs~~~TE~dLrefFs~~G~I~~V~l~~~~~---~~~~AfV~F~~~~aA~tAl-~Lng~~l~g~~I~V~~a~   79 (242)
                      ..++|||+|||+.+++++|+++|+.||.|.+|.|+.+..   ..+||||+|.++++|..|+ .|||..|.|+.|.|..+.
T Consensus        71 ~~~~l~V~nLp~~~t~~~L~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a~  150 (165)
T 1rk8_A           71 EGWILFVTSIHEEAQEDEIQEKFCDYGEIKNIHLNLDRRTGFSKGYALVEYETHKQALAAKEALNGAEIMGQTIQVDWCF  150 (165)
T ss_dssp             -CEEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTSSEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEESE
T ss_pred             CCCEEEEeCCCCCCCHHHHHHHhhcCCCEEEEEEEecCCCCcEeeEEEEEECCHHHHHHHHHHhCCCEECCEEEEEEEec
Confidence            347899999999999999999999999999999997743   2469999999999999996 699999999999998764


Q ss_pred             C
Q 026156           80 E   80 (242)
Q Consensus        80 ~   80 (242)
                      .
T Consensus       151 ~  151 (165)
T 1rk8_A          151 V  151 (165)
T ss_dssp             E
T ss_pred             C
Confidence            4

>2lea_A Serine/arginine-rich splicing factor 2; SR protein, RNA binding protein; NMR {Homo sapiens} PDB: 2leb_A 2lec_A

Probab=99.51  E-value=2e-14  Score=115.03  Aligned_cols=77  Identities=19%  Similarity=0.187  Sum_probs=69.2

Q ss_pred             CcEEEEeCCCCCCCHHHHHHHhccCCCceEEEEeecCC---cCceEEEEecCHHHHHHHH-hcCCCeecCeeEEEEecCC
Q 026156            5 GYVAEVVGLSPNATEKDIHEFFSHCGDPVHVEIIRSGE---CGGTAYVTFSNAYALETAV-LLSGATIVDQPVCIIRWGE   80 (242)
Q Consensus         5 ~~tV~VsNLs~~~TE~dLrefFs~~G~I~~V~l~~~~~---~~~~AfV~F~~~~aA~tAl-~Lng~~l~g~~I~V~~a~~   80 (242)
                      .++|||+|||+.+|+++|+++|+.||+|.+|.|..+..   ..++|||+|.++++|+.|+ .|||..|.|+.|.|..+.+
T Consensus        47 ~~~l~V~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~~~g~~~G~afV~F~~~~~A~~Ai~~l~g~~i~g~~l~V~~a~~  126 (135)
T 2lea_A           47 MTSLKVDNLTYRTSPDTLRRVFEKYGRVGDVYIPRDRYTKESRGFAFVRFHDKRDAEDAMDAMDGAVLDGRELRVQMARY  126 (135)
T ss_dssp             CCCEEEECCCSSCHHHHHHHHHGGGSCCSEEECCCCSSSSSCCSCCEEECSCHHHHHHHHTTTTTCCSSSSCCEEEECCC
T ss_pred             CCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHcCCCEECCEEEEEEECCC
Confidence            46899999999999999999999999999999987642   3469999999999999996 6999999999999997754


Q ss_pred             C
Q 026156           81 Y   81 (242)
Q Consensus        81 ~   81 (242)
                      .
T Consensus       127 ~  127 (135)
T 2lea_A          127 G  127 (135)
T ss_dssp             C
T ss_pred             C
Confidence            3

>1l3k_A Heterogeneous nuclear ribonucleoprotein A1; nuclear protein hnRNP A1, RNA-recognition motif, RNA- binding, UP1, RNA binding protein; 1.10A {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 1u1k_A* 1u1l_A* 1u1m_A* 1u1n_A* 1u1o_A 1u1p_A* 1u1q_A 1u1r_A* 1pgz_A* 1ha1_A 1po6_A* 2up1_A* 1up1_A

Probab=99.50  E-value=8.5e-14  Score=114.40  Aligned_cols=77  Identities=17%  Similarity=0.181  Sum_probs=69.6

Q ss_pred             CcEEEEeCCCCCCCHHHHHHHhccCCCceEEEEeecCC---cCceEEEEecCHHHHHHHHhcCCCeecCeeEEEEecCCC
Q 026156            5 GYVAEVVGLSPNATEKDIHEFFSHCGDPVHVEIIRSGE---CGGTAYVTFSNAYALETAVLLSGATIVDQPVCIIRWGEY   81 (242)
Q Consensus         5 ~~tV~VsNLs~~~TE~dLrefFs~~G~I~~V~l~~~~~---~~~~AfV~F~~~~aA~tAl~Lng~~l~g~~I~V~~a~~~   81 (242)
                      .++|||+|||+.+|+++|+++|+.||.|.+|.++.+..   ..++|||+|.++++|..|+.++|..|.|+.|.|..+...
T Consensus        13 ~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~~~~~~~g~~l~v~~~~~~   92 (196)
T 1l3k_A           13 LRKLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTYATVEEVDAAMNARPHKVDGRVVEPKRAVSR   92 (196)
T ss_dssp             GGEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHTCSCEETTEECEEEECCC-
T ss_pred             CCEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEEEcCCCCCccceEEEEeCCHHHHHHHHhcCCCEECCEEeeeecccCc
Confidence            47999999999999999999999999999999998743   346999999999999999988999999999999987544

>1b7f_A Protein (SXL-lethal protein), RNA (5'-R(P*GP*UP*UP*GP*UP*UP*UP*UP*UP*UP*UP*U)-3; splicing regulation, RNP domain, RNA complex; 2.60A {Drosophila melanogaster} SCOP: d.58.7.1 d.58.7.1 PDB: 3sxl_A* 1sxl_A 2sxl_A

Probab=99.50  E-value=1.1e-13  Score=110.95  Aligned_cols=76  Identities=20%  Similarity=0.270  Sum_probs=69.2

Q ss_pred             CcEEEEeCCCCCCCHHHHHHHhccCCCceEEEEeecCC---cCceEEEEecCHHHHHHHH-hcCCCeecCeeEEEEecCC
Q 026156            5 GYVAEVVGLSPNATEKDIHEFFSHCGDPVHVEIIRSGE---CGGTAYVTFSNAYALETAV-LLSGATIVDQPVCIIRWGE   80 (242)
Q Consensus         5 ~~tV~VsNLs~~~TE~dLrefFs~~G~I~~V~l~~~~~---~~~~AfV~F~~~~aA~tAl-~Lng~~l~g~~I~V~~a~~   80 (242)
                      .++|||+|||+.+++++|+++|+.||+|.+|.++++..   ..++|||+|.++++|..|+ .|||..+.|++|.|..+.+
T Consensus         3 ~~~l~v~nlp~~~~~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~a~~~l~~~~~~g~~l~v~~~~~   82 (168)
T 1b7f_A            3 NTNLIVNYLPQDMTDRELYALFRAIGPINTCRIMRDYKTGYSYGYAFVDFTSEMDSQRAIKVLNGITVRNKRLKVSYARP   82 (168)
T ss_dssp             CSEEEEECCCTTCCHHHHHHHHHTTSCEEEEECCEETTTTEECSEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECCC
T ss_pred             ccEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEEeCCCCccceEEEEEECCHHHHHHHHHhcCCCEeCCcEEEEEecCC
Confidence            48999999999999999999999999999999997643   3479999999999999996 6999999999999997654

>2m2b_A RNA-binding protein 10; T-cell, JCSG, MPP, PSI-biology; NMR {Homo sapiens}

Probab=99.49  E-value=1.6e-14  Score=114.41  Aligned_cols=75  Identities=16%  Similarity=0.165  Sum_probs=67.7

Q ss_pred             CcEEEEeCCCCCCCHHHHHHHhccCCCceE--EEEeecCC---cCceEEEEecCHHHHHHH-HhcCCC----eecCeeEE
Q 026156            5 GYVAEVVGLSPNATEKDIHEFFSHCGDPVH--VEIIRSGE---CGGTAYVTFSNAYALETA-VLLSGA----TIVDQPVC   74 (242)
Q Consensus         5 ~~tV~VsNLs~~~TE~dLrefFs~~G~I~~--V~l~~~~~---~~~~AfV~F~~~~aA~tA-l~Lng~----~l~g~~I~   74 (242)
                      .++|||+|||+.+||++|+++|+.||.|..  |+|+++..   ..+||||+|.++ ++..| ..|||.    .|+|+.|.
T Consensus        23 ~~~lfV~nL~~~~te~~L~~~F~~~G~v~~~~v~i~~d~~tg~~rG~aFV~f~~~-~a~~Ai~~l~g~~~~~~~~gr~l~  101 (131)
T 2m2b_A           23 NDTIILRNLNPHSTMDSILGALAPYAVLSSSNVRVIKDKQTQLNRGFAFIQLSTI-EAAQLLQILQALHPPLTIDGKTIN  101 (131)
T ss_dssp             CCEEEECSCCTTCCSHHHHHHHGGGCCCCTTTEECCBCSSSSSBCSCEEEECCHH-HHHHHHHHHTTCCCSCCGGGCCCC
T ss_pred             CCEEEEeCCCCCCCHHHHHHHHHHhCCcceeeEEEEEcCCCCCcceEEEEEECCH-HHHHHHHHhcCCCCCccCCCEEEE
Confidence            479999999999999999999999999977  99998753   347999999999 99999 689999    99999999


Q ss_pred             EEecCC
Q 026156           75 IIRWGE   80 (242)
Q Consensus        75 V~~a~~   80 (242)
                      |..+.+
T Consensus       102 V~~a~~  107 (131)
T 2m2b_A          102 VEFAKG  107 (131)
T ss_dssp             CEECCC
T ss_pred             EEECCC
Confidence            997754

>3egn_A RNA-binding protein 40; RNA recognition motif (RRM), RNP motif, U11/U12-65K protein, DI-snRNP, U1A protein, U2B protein; 2.50A {Homo sapiens}

Probab=99.49  E-value=7.1e-14  Score=111.67  Aligned_cols=76  Identities=20%  Similarity=0.310  Sum_probs=66.7

Q ss_pred             CcEEEEeCCCCCCCHHHHHHHhccCCCceE--------EEEeecCCcCceEEEEecCHHHHHHHH-hcCCCeecCeeEEE
Q 026156            5 GYVAEVVGLSPNATEKDIHEFFSHCGDPVH--------VEIIRSGECGGTAYVTFSNAYALETAV-LLSGATIVDQPVCI   75 (242)
Q Consensus         5 ~~tV~VsNLs~~~TE~dLrefFs~~G~I~~--------V~l~~~~~~~~~AfV~F~~~~aA~tAl-~Lng~~l~g~~I~V   75 (242)
                      .++|||+|||+.+|+++|+++|+.||.|.+        |.+...+...++|||+|.++++|..|+ .|||..|.|+.|.|
T Consensus        45 ~~~l~V~nLp~~~te~~L~~~F~~~G~i~~~~~~~~~di~~~~~g~~~g~afV~f~~~~~A~~Ai~~lng~~~~g~~l~V  124 (143)
T 3egn_A           45 NCRIYVKNLAKHVQEKDLKYIFGRYVDFSSETQRIMFDIRLMKEGRMKGQAFIGLPNEKAAAKALKEANGYVLFGKPMVV  124 (143)
T ss_dssp             CSEEEEEEECTTCCHHHHHHHHGGGCCTTCHHHHHHCEEEEEEETTTEEEEEEECSSHHHHHHHHHHHTTBEETTEECEE
T ss_pred             CCEEEEeCCCCCCCHHHHHHHHHHhCCcccccccceeeEEeccCCCcccEEEEEeCCHHHHHHHHHHhCCCEeCCcEEEE
Confidence            479999999999999999999999999987        445554555679999999999999996 59999999999999


Q ss_pred             EecCC
Q 026156           76 IRWGE   80 (242)
Q Consensus        76 ~~a~~   80 (242)
                      ..+..
T Consensus       125 ~~a~~  129 (143)
T 3egn_A          125 QFARS  129 (143)
T ss_dssp             EECCC
T ss_pred             EECCC
Confidence            97753

>1x4f_A Matrin 3; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1

Probab=99.49  E-value=8.1e-14  Score=109.48  Aligned_cols=74  Identities=12%  Similarity=0.120  Sum_probs=65.3

Q ss_pred             CcEEEEeCCCCC-CCHHHHHHHhccCCCceEEEEeecCCcCceEEEEecCHHHHHHHH-hc--CCCeecCeeEEEEecCC
Q 026156            5 GYVAEVVGLSPN-ATEKDIHEFFSHCGDPVHVEIIRSGECGGTAYVTFSNAYALETAV-LL--SGATIVDQPVCIIRWGE   80 (242)
Q Consensus         5 ~~tV~VsNLs~~-~TE~dLrefFs~~G~I~~V~l~~~~~~~~~AfV~F~~~~aA~tAl-~L--ng~~l~g~~I~V~~a~~   80 (242)
                      .++|||+|||++ ++|++|+++|+.||+|.+|.|.+.   .++|||+|.++++|..|+ .|  ++..|.|++|.|..+..
T Consensus        25 ~~~l~V~NLp~~~~te~~L~~lF~~fG~V~~v~i~~~---kg~aFVef~~~~~A~~Ai~~l~~~~~~l~Gr~l~V~~a~~  101 (112)
T 1x4f_A           25 GRVIHLSNLPHSGYSDSAVLKLAEPYGKIKNYILMRM---KSQAFIEMETREDAMAMVDHCLKKALWFQGRCVKVDLSEK  101 (112)
T ss_dssp             CCEEEEESCCCSSCCSHHHHTTTTTTSCCSEEEEETT---TTEEEEECSSHHHHHHHHHHHHHSCCCSSSSCCEEEEECS
T ss_pred             CCEEEEeCCCCccCCHHHHHHHHHhcCCEEEEEEecC---CCEEEEEECCHHHHHHHHHHhccCCceECCEEEEEEECcc
Confidence            479999999998 999999999999999999999854   479999999999999994 45  45679999999998754


Q ss_pred             C
Q 026156           81 Y   81 (242)
Q Consensus        81 ~   81 (242)
                      .
T Consensus       102 ~  102 (112)
T 1x4f_A          102 Y  102 (112)
T ss_dssp             C
T ss_pred             c
Confidence            3

>2voo_A Lupus LA protein; RNA-binding protein, RNA recognition motif, systemic lupus erythematosus, phosphoprotein, RNA maturation; 1.8A {Homo sapiens} SCOP: a.4.5.46 d.58.7.1 PDB: 2von_A 2vod_A 2vop_A 1zh5_A 1yty_A 1s7a_A

Probab=99.49  E-value=1.5e-13  Score=116.32  Aligned_cols=77  Identities=19%  Similarity=0.323  Sum_probs=68.9

Q ss_pred             cEEEEeCCCCCCCHHHHHHHhccCCCceEEEEeecCC--cCceEEEEecCHHHHHHHHhcCCCeecCeeEEEEecCCCC
Q 026156            6 YVAEVVGLSPNATEKDIHEFFSHCGDPVHVEIIRSGE--CGGTAYVTFSNAYALETAVLLSGATIVDQPVCIIRWGEYT   82 (242)
Q Consensus         6 ~tV~VsNLs~~~TE~dLrefFs~~G~I~~V~l~~~~~--~~~~AfV~F~~~~aA~tAl~Lng~~l~g~~I~V~~a~~~~   82 (242)
                      ++|||+|||+.+|+++|+++|+.||.|.+|+|.++..  ..++|||+|.++++|+.|+.+.+..|+|++|.|....+|.
T Consensus       110 ~~l~V~nLp~~~t~~~L~~~F~~~G~v~~v~i~~~~~~~~kG~aFVeF~~~e~A~~A~~~~~~~~~Gr~l~V~~~~~y~  188 (193)
T 2voo_A          110 RSVYIKGFPTDATLDDIKEWLEDKGQVLNIQMRRTLHKAFKGSIFVVFDSIESAKKFVETPGQKYKETDLLILFKDDYF  188 (193)
T ss_dssp             TEEEEECCCTTCCHHHHHHHHTTSCCEEEEEEEECTTCCEEEEEEEEESSHHHHHHHHHCTTCEETTEECEEEETTTC-
T ss_pred             CEEEecCCCCcCCHHHHHHHHhcCCCEEEEEEEECCCCCcccEEEEEECCHHHHHHHHHhCCCeECCEEEEEEEhHHHH
Confidence            7999999999999999999999999999999997643  3479999999999999998777789999999999776553

>2fc8_A NCL protein; structure genomics, RRM_1 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.49  E-value=1.2e-13  Score=103.78  Aligned_cols=75  Identities=21%  Similarity=0.224  Sum_probs=63.7

Q ss_pred             CCcEEEEeCCCCCCCHHHHHHHhccCCCceEEEEeecCC---cCceEEEEecCHHHHHHHH-hcCCCeecCeeEEEEecC
Q 026156            4 GGYVAEVVGLSPNATEKDIHEFFSHCGDPVHVEIIRSGE---CGGTAYVTFSNAYALETAV-LLSGATIVDQPVCIIRWG   79 (242)
Q Consensus         4 ~~~tV~VsNLs~~~TE~dLrefFs~~G~I~~V~l~~~~~---~~~~AfV~F~~~~aA~tAl-~Lng~~l~g~~I~V~~a~   79 (242)
                      ..++|||+|||+.+++++|+++|+.|+   .|.++.+..   ..++|||+|.++++|+.|+ .|||..|.|+.|.|..+.
T Consensus        14 ~~~~l~V~nLp~~~t~~~l~~~F~~~~---~~~~~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~a~   90 (102)
T 2fc8_A           14 PSKTLFVKGLSEDTTEETLKESFDGSV---RARIVTDRETGSSKGFGFVDFNSEEDAKAAKEAMEDGEIDGNKVTLDWAK   90 (102)
T ss_dssp             CCSSEEEECCCTTCCHHHHHHTSTTCS---EEEEEECSSSCSEEEEEEEECSSHHHHHHHHHHHTTCEETTEECEEEECC
T ss_pred             CCCEEEEeCCCCccCHHHHHHHhcCCe---EEEEEecCCCCCcCcEEEEEECCHHHHHHHHHHhCCCeECCeEEEEEEec
Confidence            357899999999999999999999774   566665532   3469999999999999996 699999999999999875


Q ss_pred             CC
Q 026156           80 EY   81 (242)
Q Consensus        80 ~~   81 (242)
                      +.
T Consensus        91 ~~   92 (102)
T 2fc8_A           91 PK   92 (102)
T ss_dssp             CC
T ss_pred             CC
Confidence            43

>4f02_A Polyadenylate-binding protein 1; mRNA, eukaryotic initiation factors PAIP1 and PAIP2, translation-RNA complex; 2.00A {Homo sapiens} PDB: 1cvj_A*

Probab=99.49  E-value=1.4e-13  Score=116.71  Aligned_cols=75  Identities=28%  Similarity=0.293  Sum_probs=68.1

Q ss_pred             cEEEEeCCCCCCCHHHHHHHhccCCCceEEEEeecCC---cCceEEEEecCHHHHHHHH-hcCCCeecCeeEEEEecCC
Q 026156            6 YVAEVVGLSPNATEKDIHEFFSHCGDPVHVEIIRSGE---CGGTAYVTFSNAYALETAV-LLSGATIVDQPVCIIRWGE   80 (242)
Q Consensus         6 ~tV~VsNLs~~~TE~dLrefFs~~G~I~~V~l~~~~~---~~~~AfV~F~~~~aA~tAl-~Lng~~l~g~~I~V~~a~~   80 (242)
                      +||||+|||+++||++|+++|+.||+|.+|+|+++..   ..++|||+|.++++|..|+ .+||..+.|+.|.+.....
T Consensus        16 ~tlfVgnLp~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~~G~afV~F~~~~~A~~Ai~~~~~~~~~g~~i~~~~~~~   94 (213)
T 4f02_A           16 ASLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQPADAERALDTMNFDVIKGKPVRIMWSQR   94 (213)
T ss_dssp             CEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECCC
T ss_pred             cEEEEeCCCCCCCHHHHHHHHHhhCCEEEEEEecccCCCCccccccceeCCHHHHHHHHHHhhhhhcCCcccccccccc
Confidence            6999999999999999999999999999999998754   3469999999999999994 8999999999999986543

>2f3j_A RNA and export factor binding protein 2; RRM domain, RBD domain., transport protein; NMR {Mus musculus}

Probab=99.49  E-value=7.8e-14  Score=116.72  Aligned_cols=77  Identities=22%  Similarity=0.225  Sum_probs=69.3

Q ss_pred             CcEEEEeCCCCCCCHHHHHHHhccCCCceEEEEeecC--CcCceEEEEecCHHHHHHHH-hcCCCeecCeeEEEEecCCC
Q 026156            5 GYVAEVVGLSPNATEKDIHEFFSHCGDPVHVEIIRSG--ECGGTAYVTFSNAYALETAV-LLSGATIVDQPVCIIRWGEY   81 (242)
Q Consensus         5 ~~tV~VsNLs~~~TE~dLrefFs~~G~I~~V~l~~~~--~~~~~AfV~F~~~~aA~tAl-~Lng~~l~g~~I~V~~a~~~   81 (242)
                      .++|||+|||+.+++++|+++|+.||.|.+|.|..+.  ...++|||+|.++++|..|+ .|||..|+|+.|.|..+...
T Consensus        88 ~~~l~V~nLp~~~te~~L~~~F~~~G~I~~v~i~~d~~g~~kG~afV~F~~~~~A~~Ai~~lng~~l~Gr~l~V~~a~~~  167 (177)
T 2f3j_A           88 GAKLLVSNLDFGVSDADIQELFAEFGTLKKAAVDYDRSGRSLGTADVHFERRADALKAMKQYKGVPLDGRPMDIQLVASQ  167 (177)
T ss_dssp             CEEEEEECCCSCCCHHHHHHHHHHTSCCSEEEECCCTTSSCSCCEEEEESCHHHHHHHHHHSTTCBCSSSBCEEEEESSG
T ss_pred             CCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECCCCCEeeEEEEEeCCHHHHHHHHHHhCCCEECCEEEEEEEecCC
Confidence            4799999999999999999999999999999999764  23479999999999999996 59999999999999977543

>3q2s_C Cleavage and polyadenylation specificity factor S; CFIM, CFIM25, CFIM68, CPSF5, CPSF6, CPSF, 3' END processing, processing, cleavage factor; 2.90A {Homo sapiens} PDB: 3q2t_C

Probab=99.48  E-value=8.6e-14  Score=120.89  Aligned_cols=75  Identities=16%  Similarity=0.170  Sum_probs=67.8

Q ss_pred             CcEEEEeCCCCCCCHHHHHHHhccCC--CceEEEEeecCC---cCceEEEEecCHHHHHHHH-hcCCCeecCeeEEEEec
Q 026156            5 GYVAEVVGLSPNATEKDIHEFFSHCG--DPVHVEIIRSGE---CGGTAYVTFSNAYALETAV-LLSGATIVDQPVCIIRW   78 (242)
Q Consensus         5 ~~tV~VsNLs~~~TE~dLrefFs~~G--~I~~V~l~~~~~---~~~~AfV~F~~~~aA~tAl-~Lng~~l~g~~I~V~~a   78 (242)
                      .++|||+||++.+|+++|+++|+.||  +|.+|+|+.+..   ..+||||+|.+.++|+.|+ .|||..|.|+.|.|..+
T Consensus        68 ~~~lfVgnL~~~~te~~L~~~F~~~G~~~v~~v~i~~d~~tg~skGfaFV~f~~~~~a~~Ai~~lng~~~~Gr~l~V~~a  147 (229)
T 3q2s_C           68 RIALYIGNLTWWTTDEDLTEAVHSLGVNDILEIKFFENRANGQSKGFALVGVGSEASSKKLMDLLPKRELHGQNPVVTPV  147 (229)
T ss_dssp             -CEEEEESCCTTCCHHHHHHHHHTTTCCCEEEEEEEECTTTCCEEEEEEEEESCTTHHHHHHTTSTTSCBTTBCCEEEEC
T ss_pred             ccEEEEeCCCCCCCHHHHHHHHHHHCCcceEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHcCCCeECCEEeEEEEC
Confidence            46899999999999999999999999  999999998754   2469999999999999996 59999999999999976


Q ss_pred             C
Q 026156           79 G   79 (242)
Q Consensus        79 ~   79 (242)
                      .
T Consensus       148 ~  148 (229)
T 3q2s_C          148 N  148 (229)
T ss_dssp             C
T ss_pred             C
Confidence            4

>1x5p_A Negative elongation factor E; structure genomics, RRM domain, PARP14, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1

Probab=99.48  E-value=3.6e-13  Score=100.82  Aligned_cols=72  Identities=19%  Similarity=0.215  Sum_probs=64.5

Q ss_pred             CCcEEEEeCCCCCCCHHHHHHHhccCCCceEEEEeecCCcCceEEEEecCHHHHHHHH-hcCCCeecCeeEEEEecCC
Q 026156            4 GGYVAEVVGLSPNATEKDIHEFFSHCGDPVHVEIIRSGECGGTAYVTFSNAYALETAV-LLSGATIVDQPVCIIRWGE   80 (242)
Q Consensus         4 ~~~tV~VsNLs~~~TE~dLrefFs~~G~I~~V~l~~~~~~~~~AfV~F~~~~aA~tAl-~Lng~~l~g~~I~V~~a~~   80 (242)
                      ..++|||+||  .+|+++|+++|+.||+|.+|.|.+   ..++|||+|.++++|..|+ .|||..|.|+.|.|..+.+
T Consensus        14 ~~~~l~V~n~--~~t~~~l~~~F~~~G~i~~v~i~~---~~g~afV~f~~~~~a~~Ai~~l~g~~~~g~~l~v~~a~~   86 (97)
T 1x5p_A           14 KGNTLYVYGE--DMTPTLLRGAFSPFGNIIDLSMDP---PRNCAFVTYEKMESADQAVAELNGTQVESVQLKVNIARK   86 (97)
T ss_dssp             CCSEEEEECS--SCCHHHHHHHHTTTSCEEEEEEET---TTTEEEEEESSHHHHHHHHHHTTTEEETTEEEEEECCSS
T ss_pred             CCCEEEEcCC--CCCHHHHHHHHhhCCCEEEEEecC---CCCEEEEEECCHHHHHHHHHHhCCCeECCeEEEEEECCC
Confidence            3479999996  899999999999999999999953   3469999999999999995 8999999999999997654

>1l3k_A Heterogeneous nuclear ribonucleoprotein A1; nuclear protein hnRNP A1, RNA-recognition motif, RNA- binding, UP1, RNA binding protein; 1.10A {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 1u1k_A* 1u1l_A* 1u1m_A* 1u1n_A* 1u1o_A 1u1p_A* 1u1q_A 1u1r_A* 1pgz_A* 1ha1_A 1po6_A* 2up1_A* 1up1_A

Probab=99.48  E-value=2.1e-13  Score=112.01  Aligned_cols=77  Identities=18%  Similarity=0.241  Sum_probs=68.7

Q ss_pred             CcEEEEeCCCCCCCHHHHHHHhccCCCceEEEEeecCC---cCceEEEEecCHHHHHHHHhcCCCeecCeeEEEEecCCC
Q 026156            5 GYVAEVVGLSPNATEKDIHEFFSHCGDPVHVEIIRSGE---CGGTAYVTFSNAYALETAVLLSGATIVDQPVCIIRWGEY   81 (242)
Q Consensus         5 ~~tV~VsNLs~~~TE~dLrefFs~~G~I~~V~l~~~~~---~~~~AfV~F~~~~aA~tAl~Lng~~l~g~~I~V~~a~~~   81 (242)
                      .++|||+|||+.+|+++|+++|+.||.|.+|.+..+..   ..++|||+|.++++|..|+..+|..|+|+.|.|..+.+.
T Consensus       104 ~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~F~~~~~A~~A~~~~~~~~~G~~i~v~~a~~k  183 (196)
T 1l3k_A          104 VKKIFVGGIKEDTEEHHLRDYFEQYGKIEVIEIMTDRGSGKKRGFAFVTFDDHDSVDKIVIQKYHTVNGHNCEVRKALSK  183 (196)
T ss_dssp             CSEEEEECCTTTCCHHHHHHHHTTTSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHCSCCEETTEECEEEECC--
T ss_pred             cceEEEeCCCCCCCHHHHHHHHhcCCCeEEEEEeecCCCCCccceEEEEECCHHHHHHHHHhCCcEECCEEEEEEecCCh
Confidence            37999999999999999999999999999999998743   346999999999999999877999999999999977543

>2dnl_A Cytoplasmic polyadenylation element binding protein 3; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.48  E-value=1.5e-13  Score=106.16  Aligned_cols=74  Identities=30%  Similarity=0.469  Sum_probs=58.5

Q ss_pred             CCcEEEEeCCCCCCCHHHHHHHhccCCCceEEEEeecC------CcCceEEEEecCHHHHHHHH-hc---CCC-------
Q 026156            4 GGYVAEVVGLSPNATEKDIHEFFSHCGDPVHVEIIRSG------ECGGTAYVTFSNAYALETAV-LL---SGA-------   66 (242)
Q Consensus         4 ~~~tV~VsNLs~~~TE~dLrefFs~~G~I~~V~l~~~~------~~~~~AfV~F~~~~aA~tAl-~L---ng~-------   66 (242)
                      ..++|||+|||+.+|+++|+++|+.||+|. +.++.+.      ...+||||+|.++++|+.|+ .|   ||.       
T Consensus         7 ~~~~lfVgnLp~~~te~~L~~~F~~~G~i~-~~~~~~~~~~~~g~~~G~aFV~f~~~~~a~~Ai~~~~~~~G~~~~~~~~   85 (114)
T 2dnl_A            7 GSRKVFVGGLPPDIDEDEITASFRRFGPLV-VDWPHKAESKSYFPPKGYAFLLFQEESSVQALIDACLEEDGKLYLCVSS   85 (114)
T ss_dssp             CCCCEEEECCCTTCCHHHHHHHTTTTCCCC-EECTTSSSSCCCSCTTSEEEECCSSHHHHHHHHHHSEEETTEEEEEECC
T ss_pred             CCCEEEEcCCCCCCCHHHHHHHHHhcCCEE-EEEeecCCCCCCCCcccEEEEEECCHHHHHHHHHhhhhcCCcEEEeccC
Confidence            457999999999999999999999999999 7777553      23579999999999999994 45   554       


Q ss_pred             -eecCeeEEEEec
Q 026156           67 -TIVDQPVCIIRW   78 (242)
Q Consensus        67 -~l~g~~I~V~~a   78 (242)
                       .+.++.+.|.||
T Consensus        86 ~~~~~~~~~v~p~   98 (114)
T 2dnl_A           86 PTIKDKPVQIRPW   98 (114)
T ss_dssp             SSSCSEEEEEECC
T ss_pred             CCcCCCeeeccCC
Confidence             334455555544

>2lcw_A RNA-binding protein FUS; RRM, nucleic acid binding protein; NMR {Homo sapiens}

Probab=99.21  E-value=3.2e-15  Score=115.54  Aligned_cols=81  Identities=19%  Similarity=0.286  Sum_probs=70.7

Q ss_pred             CCCCcEEEEeCCCCCCCHHHHHHHhccCCCceE--------EEEeecCC---cCceEEEEecCHHHHHHHH-hcCCCeec
Q 026156            2 YAGGYVAEVVGLSPNATEKDIHEFFSHCGDPVH--------VEIIRSGE---CGGTAYVTFSNAYALETAV-LLSGATIV   69 (242)
Q Consensus         2 ~~~~~tV~VsNLs~~~TE~dLrefFs~~G~I~~--------V~l~~~~~---~~~~AfV~F~~~~aA~tAl-~Lng~~l~   69 (242)
                      .+..++|||+|||+.+++++|+++|+.||.|.+        |.+..+..   ..++|||+|.++++|+.|+ .|||..|.
T Consensus         4 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~~~~~~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~   83 (116)
T 2lcw_A            4 NSDNNTIFVQGLGENVTIESVADYFKQIGIIKTNKKTGQPMINLYTDRETGKLKGEATVSFDDPPSAKAAIDWFDGKEFS   83 (116)
Confidence            345689999999999999999999999999999        88887633   3469999999999999996 59999999


Q ss_pred             CeeEEEEecCCCC
Q 026156           70 DQPVCIIRWGEYT   82 (242)
Q Consensus        70 g~~I~V~~a~~~~   82 (242)
                      |+.|.|..+.+.+
T Consensus        84 g~~l~V~~a~~~~   96 (116)
T 2lcw_A           84 GNPIKVSFATRRA   96 (116)
Confidence            9999999775543

>4f02_A Polyadenylate-binding protein 1; mRNA, eukaryotic initiation factors PAIP1 and PAIP2, translation-RNA complex; 2.00A {Homo sapiens} PDB: 1cvj_A*

Probab=99.47  E-value=1.4e-13  Score=116.63  Aligned_cols=76  Identities=20%  Similarity=0.291  Sum_probs=69.2

Q ss_pred             CcEEEEeCCCCCCCHHHHHHHhccCCCceEEEEeecCC-cCceEEEEecCHHHHHHHH-hcCCCeecCeeEEEEecCC
Q 026156            5 GYVAEVVGLSPNATEKDIHEFFSHCGDPVHVEIIRSGE-CGGTAYVTFSNAYALETAV-LLSGATIVDQPVCIIRWGE   80 (242)
Q Consensus         5 ~~tV~VsNLs~~~TE~dLrefFs~~G~I~~V~l~~~~~-~~~~AfV~F~~~~aA~tAl-~Lng~~l~g~~I~V~~a~~   80 (242)
                      .++|||+||++.+|+++|+++|+.||.|.+|+|+.+.+ ..++|||+|.++++|..|+ .|||..|+|++|.|..+.+
T Consensus       103 ~~~l~v~nl~~~~t~~~l~~~F~~~G~i~~~~i~~d~~~~~g~~fV~f~~~~~a~~Ai~~lng~~~~g~~i~V~~a~~  180 (213)
T 4f02_A          103 VGNIFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENGSKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFVGRFKS  180 (213)
T ss_dssp             TTEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEEETTEEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECCC
T ss_pred             cccceECCcccccHHHHHHHHHhhcCCeEEEEeeccCCCCceEEEEEeCCHHHHHHHHHHhCCCEECCEEEEEEEcCC
Confidence            46899999999999999999999999999999998754 3479999999999999995 7999999999999987643

>2qfj_A FBP-interacting repressor; protein-DNA complex; HET: DNA; 2.10A {Homo sapiens} PDB: 3uwt_A 2kxf_A 2kxh_A

Probab=99.47  E-value=2.1e-13  Score=113.63  Aligned_cols=79  Identities=14%  Similarity=0.122  Sum_probs=70.6

Q ss_pred             CcEEEEeCCCCCCCHHHHHHHhccCCCceEEEEeecCC---cCceEEEEecCHHHHHHHH-hcCCCeecCeeEEEEecCC
Q 026156            5 GYVAEVVGLSPNATEKDIHEFFSHCGDPVHVEIIRSGE---CGGTAYVTFSNAYALETAV-LLSGATIVDQPVCIIRWGE   80 (242)
Q Consensus         5 ~~tV~VsNLs~~~TE~dLrefFs~~G~I~~V~l~~~~~---~~~~AfV~F~~~~aA~tAl-~Lng~~l~g~~I~V~~a~~   80 (242)
                      .++|||+||++.+++++|+++|+.||.|.+|.+..+..   ..++|||+|.+.++|..|+ .|||..|+|+.|.|..+.+
T Consensus       125 ~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~g~~~g~afV~F~~~~~A~~A~~~l~g~~~~g~~i~V~~a~~  204 (216)
T 2qfj_A          125 FNRIYVASVHQDLSDDDIKSVFEAFGKIKSATLARDPTTGKHKGYGFIEYEKAQSSQDAVSSMNLFDLGGQYLRVGKAVT  204 (216)
T ss_dssp             SCEEEEECCCTTCCHHHHHHHHTTSSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCBCSSSBCEEEECSS
T ss_pred             CcEEEEeCCCCcCCHHHHHHHHhccCCeeEEEEEecCCCCCcCceEEEEecCHHHHHHHHHHccCCEeCCcEEEEEEecC
Confidence            47999999999999999999999999999999998743   2469999999999999995 6999999999999998765


Q ss_pred             CCC
Q 026156           81 YTD   83 (242)
Q Consensus        81 ~~~   83 (242)
                      .+.
T Consensus       205 ~~~  207 (216)
T 2qfj_A          205 PPM  207 (216)
T ss_dssp             CSS
T ss_pred             CCC
Confidence            443

>2cjk_A Nuclear polyadenylated RNA-binding protein 4; HRP1, RNA-binding, RNA processing, mRNA processing, nonsense-mediated mRNA decay, cleavage; NMR {Saccharomyces cerevisiae} PDB: 2km8_C

Probab=99.47  E-value=6.2e-14  Score=112.43  Aligned_cols=75  Identities=23%  Similarity=0.330  Sum_probs=68.6

Q ss_pred             CcEEEEeCCCCCCCHHHHHHHhccCCCceEEEEeecCC---cCceEEEEecCHHHHHHHHhcCCCeecCeeEEEEecC
Q 026156            5 GYVAEVVGLSPNATEKDIHEFFSHCGDPVHVEIIRSGE---CGGTAYVTFSNAYALETAVLLSGATIVDQPVCIIRWG   79 (242)
Q Consensus         5 ~~tV~VsNLs~~~TE~dLrefFs~~G~I~~V~l~~~~~---~~~~AfV~F~~~~aA~tAl~Lng~~l~g~~I~V~~a~   79 (242)
                      .++|||+|||+.+++++|+++|+.||.|.+|.+..+..   ..++|||+|.++++|..|+.+||..|+|++|.|..+.
T Consensus        87 ~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~~~~~~~g~~i~V~~a~  164 (167)
T 2cjk_A           87 TGKIFVGGIGPDVRPKEFEEFFSQWGTIIDAQLMLDKDTGQSRGFGFVTYDSADAVDRVCQNKFIDFKDRKIEIKRAE  164 (167)
T ss_dssp             CEEEEEEEECTTCCHHHHHHHHHTTSCCSEEECCCSSSSSTTSEEEEEEESSHHHHHHHHHCSEECSSSSCEEEEECC
T ss_pred             CCeEEECCCCCCCCHHHHHHHHHhCccEEEEEEEEcCCCCccceEEEEEECCHHHHHHHHhCCCEEeCCeEEEEeecC
Confidence            36899999999999999999999999999999997643   3479999999999999998899999999999999764

>3md3_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RNP, RBD, poly(U) binding, tandem, acetylation, cytopla nucleus; 2.70A {Saccharomyces cerevisiae}

Probab=99.47  E-value=2.6e-13  Score=108.04  Aligned_cols=76  Identities=14%  Similarity=0.232  Sum_probs=68.3

Q ss_pred             CCcEEEEeCCCCCCCHHHHHHHhccCCCceEEEEeecCC---cCceEEEEecCHHHHHHHH-hcCCCeecCeeEEEEecC
Q 026156            4 GGYVAEVVGLSPNATEKDIHEFFSHCGDPVHVEIIRSGE---CGGTAYVTFSNAYALETAV-LLSGATIVDQPVCIIRWG   79 (242)
Q Consensus         4 ~~~tV~VsNLs~~~TE~dLrefFs~~G~I~~V~l~~~~~---~~~~AfV~F~~~~aA~tAl-~Lng~~l~g~~I~V~~a~   79 (242)
                      ..++|||+|||+.+++++|+++|+.||.|.++.+..+..   ..++|||+|.++++|..|+ .|||..|+|++|.|..+.
T Consensus        86 ~~~~l~v~nl~~~~t~~~l~~~f~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~i~v~~a~  165 (166)
T 3md3_A           86 DTFNLFVGDLNVNVDDETLRNAFKDFPSYLSGHVMWDMQTGSSRGYGFVSFTSQDDAQNAMDSMQGQDLNGRPLRINWAA  165 (166)
T ss_dssp             TCEEEEEESCCTTCCHHHHHHHHTTSTTEEEEEEEECTTTCCEEEEEEEEESCHHHHHHHHHHHTTCEETTEECEEEESC
T ss_pred             CCceEEECCCCCCCCHHHHHHHHhccCCeeEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhCCCccCCcEEEEEecC
Confidence            357899999999999999999999999999999997743   2469999999999999995 699999999999998653

>3tyt_A Heterogeneous nuclear ribonucleoprotein L; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG; 1.60A {Mus musculus} PDB: 3s01_A 3to8_A

Probab=99.46  E-value=2.9e-13  Score=115.41  Aligned_cols=75  Identities=21%  Similarity=0.334  Sum_probs=68.3

Q ss_pred             CCcEEEEeCCC-CCCCHHHHHHHhccCCCceEEEEeecCCcCceEEEEecCHHHHHHHH-hcCCCeecCeeEEEEecCC
Q 026156            4 GGYVAEVVGLS-PNATEKDIHEFFSHCGDPVHVEIIRSGECGGTAYVTFSNAYALETAV-LLSGATIVDQPVCIIRWGE   80 (242)
Q Consensus         4 ~~~tV~VsNLs-~~~TE~dLrefFs~~G~I~~V~l~~~~~~~~~AfV~F~~~~aA~tAl-~Lng~~l~g~~I~V~~a~~   80 (242)
                      ..++|||+||+ +.+++++|+++|+.||.|.+|+++++.  .++|||+|.++++|+.|+ .|||..|.|+.|.|..+..
T Consensus         3 ~~~~l~V~nL~~~~~~~~~L~~~F~~~G~v~~v~i~~~~--~g~afV~f~~~~~A~~Ai~~lng~~~~g~~l~v~~s~~   79 (205)
T 3tyt_A            3 DSPVLMVYGLDQSKMNCDRVFNVFCLYGNVEKVKFMKSK--PGAAMVEMADGYAVDRAITHLNNNFMFGQKMNVCVSKQ   79 (205)
T ss_dssp             CCSEEEEECCCTTTCCHHHHHHHHTTTSCEEEEEECTTS--TTCEEEEESSHHHHHHHHHHHTTCEETTEECEEEECSC
T ss_pred             CCCEEEEeCCCcccCCHHHHHHHHHhcCCeEEEEEecCC--CCEEEEEECCHHHHHHHHHHhCCCEECCceEEEEEccC
Confidence            45899999999 799999999999999999999998653  579999999999999995 7999999999999997753

>3nmr_A Cugbp ELAV-like family member 1; RRM, PRE-mRNA splicing, RNA binding protein-RNA complex; 1.85A {Homo sapiens} PDB: 3nna_A 3nnc_A 2dhs_A 3nnh_A

Probab=99.45  E-value=2.2e-13  Score=109.51  Aligned_cols=77  Identities=21%  Similarity=0.309  Sum_probs=66.9

Q ss_pred             CCcEEEEeCCCCCCCHHHHHHHhccCCCceEEEEeecCC-----cCceEEEEecCHHHHHHHH-hcCCCeec---CeeEE
Q 026156            4 GGYVAEVVGLSPNATEKDIHEFFSHCGDPVHVEIIRSGE-----CGGTAYVTFSNAYALETAV-LLSGATIV---DQPVC   74 (242)
Q Consensus         4 ~~~tV~VsNLs~~~TE~dLrefFs~~G~I~~V~l~~~~~-----~~~~AfV~F~~~~aA~tAl-~Lng~~l~---g~~I~   74 (242)
                      ..++|||+|||+.+|+++|+++|+.||+|.+|.++++..     ..++|||+|.++++|+.|+ .|||..+.   ++.+.
T Consensus         2 ~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~~~~~~~~~~~~~~   81 (175)
T 3nmr_A            2 DAIKMFVGQVPRTWSEKDLRELFEQYGAVYEINVLRDRSQNPPQSKGCCFVTFYTRKAALEAQNALHNMKVLPGMHHPIQ   81 (175)
T ss_dssp             CCEEEEEESCCTTCCHHHHHHHHHTTSCEEEEEEEEECSSSSCEEEEEEEEEESSHHHHHHHHHHHTTTCCCTTCSSCCE
T ss_pred             CceEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEEecCCCCCCCcceEEEEEECCHHHHHHHHHHhcCcEEccCCccceE
Confidence            468999999999999999999999999999999997753     2469999999999999995 79998876   67777


Q ss_pred             EEecCC
Q 026156           75 IIRWGE   80 (242)
Q Consensus        75 V~~a~~   80 (242)
                      +.+...
T Consensus        82 ~~~~~~   87 (175)
T 3nmr_A           82 MKPADS   87 (175)
T ss_dssp             EEECGG
T ss_pred             Eccccc
Confidence            776543

>2qfj_A FBP-interacting repressor; protein-DNA complex; HET: DNA; 2.10A {Homo sapiens} PDB: 3uwt_A 2kxf_A 2kxh_A

Probab=99.44  E-value=2.4e-13  Score=113.36  Aligned_cols=74  Identities=15%  Similarity=0.140  Sum_probs=65.8

Q ss_pred             cEEEEeCCCCCCCHHHHHHHhccCCCceEEEEeecCC---cCceEEEEecCHHHHHHHH-hcCCCeecCeeEEEEecC
Q 026156            6 YVAEVVGLSPNATEKDIHEFFSHCGDPVHVEIIRSGE---CGGTAYVTFSNAYALETAV-LLSGATIVDQPVCIIRWG   79 (242)
Q Consensus         6 ~tV~VsNLs~~~TE~dLrefFs~~G~I~~V~l~~~~~---~~~~AfV~F~~~~aA~tAl-~Lng~~l~g~~I~V~~a~   79 (242)
                      ++|||+|||+.+|+++|+++|+.||+|.+|.++.+..   ..++|||+|.++++|..|+ .|||..|.|+.|.|..+.
T Consensus        29 ~~l~V~nLp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~~~~~~g~~l~v~~~~  106 (216)
T 2qfj_A           29 SRVYVGSIYYELGEDTIRQAFAPFGPIKSIDMSWDSVTMKHKGFAFVEYEVPEAAQLALEQMNSVMLGGRNIKVGRPS  106 (216)
T ss_dssp             TEEEEECCCTTCCHHHHHHHHGGGSCEEEEEECCC-CC-CCCSEEEEEESSHHHHHHHHHHHSSCCCC-CCCEEECCS
T ss_pred             CEEEEECCCCCCCHHHHHHHHHhCCCEEEEEEeecCCCCccCceEEEEeCCHHHHHHHHHHccCCeeCCeeEEEecCC
Confidence            6899999999999999999999999999999987642   3579999999999999996 499999999999997654

>2g4b_A Splicing factor U2AF 65 kDa subunit; protein-RNA complex, RNA splicing factor, RNA recognition motif, RNA binding protein/RNA complex; 2.50A {Homo sapiens} PDB: 2u2f_A

Probab=99.44  E-value=3.6e-13  Score=108.46  Aligned_cols=74  Identities=15%  Similarity=0.286  Sum_probs=67.4

Q ss_pred             CcEEEEeCCCCCCCHHHHHHHhccCCCceEEEEeecCC---cCceEEEEecCHHHHHHHH-hcCCCeecCeeEEEEec
Q 026156            5 GYVAEVVGLSPNATEKDIHEFFSHCGDPVHVEIIRSGE---CGGTAYVTFSNAYALETAV-LLSGATIVDQPVCIIRW   78 (242)
Q Consensus         5 ~~tV~VsNLs~~~TE~dLrefFs~~G~I~~V~l~~~~~---~~~~AfV~F~~~~aA~tAl-~Lng~~l~g~~I~V~~a   78 (242)
                      .++|||+|||+.+|+++|+++|+.||.|.+|.+..+..   ..++|||+|.++++|..|+ .|||..|+|++|.|..+
T Consensus        94 ~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~A  171 (172)
T 2g4b_A           94 AHKLFIGGLPNYLNDDQVKELLTSFGPLKAFNLVKDSATGLSKGYAFCEYVDINVTDQAIAGLNGMQLGDKKLLVQRA  171 (172)
T ss_dssp             TTCEEEECCCTTCCHHHHHHHHHTTSCEEEEEEEECTTTCSEEEEEEEEESSTTHHHHHHHHHTTCEETTEECEEEEC
T ss_pred             CCEEEEEcCCCcCCHHHHHHHHHhcCCceEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHcCCCEECCeEEEEEeC
Confidence            47899999999999999999999999999999998743   2469999999999999995 69999999999999865

>1qm9_A Polypyrimidine tract-binding protein; ribonucleoprotein, RNP, RNA, spicing, translation; NMR {Homo sapiens} SCOP: d.58.7.1 d.58.7.1

Probab=99.44  E-value=2e-13  Score=113.23  Aligned_cols=75  Identities=23%  Similarity=0.303  Sum_probs=68.7

Q ss_pred             CcEEEEeCCCC-CCCHHHHHHHhccCCCceEEEEeecCCcCceEEEEecCHHHHHHHH-hcCCCeecCeeEEEEecCCC
Q 026156            5 GYVAEVVGLSP-NATEKDIHEFFSHCGDPVHVEIIRSGECGGTAYVTFSNAYALETAV-LLSGATIVDQPVCIIRWGEY   81 (242)
Q Consensus         5 ~~tV~VsNLs~-~~TE~dLrefFs~~G~I~~V~l~~~~~~~~~AfV~F~~~~aA~tAl-~Lng~~l~g~~I~V~~a~~~   81 (242)
                      .++|||+|||+ .+++++|+++|+.||.|.+|.+..+.  .++|||+|.++++|..|+ .|||..|.|+.|.|..+...
T Consensus         3 ~~~l~v~nlp~~~~~~~~l~~~F~~~G~i~~v~i~~~~--~g~afV~f~~~~~a~~A~~~l~~~~~~g~~l~v~~a~~~   79 (198)
T 1qm9_A            3 NSVLLVSNLNPERVTPQSLFILFGVYGDVQRVKILFNK--KENALVQMADGNQAQLAMSHLNGHKLHGKPIRITLSKHQ   79 (198)
T ss_dssp             CCEEEEECCCSSSCCHHHHHHHHHTTCCCSEEECSTTC--SSCCEEECTTTHHHHHHHHHHTTCCCSSCCCEEEECCCC
T ss_pred             CcEEEEeCCCcccCCHHHHHHHHHhcCCEEEEEEEeCC--CCEEEEEECCHHHHHHHHHHhCCCeecCeEEEEEEecCC
Confidence            47999999999 99999999999999999999999765  569999999999999996 59999999999999977543

>1sjr_A Polypyrimidine tract-binding protein 1; extended babbab motif, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 2adb_A

Probab=99.44  E-value=3.3e-13  Score=112.77  Aligned_cols=75  Identities=17%  Similarity=0.130  Sum_probs=66.4

Q ss_pred             cEEEEeCCCCCCCHHHHHHHhccCCCceEEEEeecCCcCceEEEEecCHHHHHHH-HhcCCCeecC--eeEEEEecCCC
Q 026156            6 YVAEVVGLSPNATEKDIHEFFSHCGDPVHVEIIRSGECGGTAYVTFSNAYALETA-VLLSGATIVD--QPVCIIRWGEY   81 (242)
Q Consensus         6 ~tV~VsNLs~~~TE~dLrefFs~~G~I~~V~l~~~~~~~~~AfV~F~~~~aA~tA-l~Lng~~l~g--~~I~V~~a~~~   81 (242)
                      .+|||+||++.+|+++|+++|+.||+|++|.|.... ..++|||+|.++++|+.| ..|||..|.|  +.|+|..+...
T Consensus        47 l~l~VgNL~~~vted~L~~~Fs~fG~V~~V~i~~k~-~rgfAFVeF~d~~~A~~Ai~~LnG~~i~g~g~~L~V~~Ak~~  124 (164)
T 1sjr_A           47 LRIIVENLFYPVTLDVLHQIFSKFGTVLKIITFTKN-NQFQALLQYADPVSAQHAKLSLDGQNIYNACCTLRIDFSKLT  124 (164)
T ss_dssp             EEEEECSCCSCCCHHHHHHHHHHHSCEEEEEEEESS-SCEEEEEEESCHHHHHHHHHHSTTBCSSSSCSCEEEEECSSS
T ss_pred             EEEEEeCcCCCCCHHHHHHHHHhcCCEEEEEEEeCC-CCCEEEEEECCHHHHHHHHHHhCCCEecCCCcEEEEEEecCC
Confidence            568999999999999999999999999999997543 346999999999999999 5799999965  99999977643

>3zzy_A Polypyrimidine tract-binding protein 1; protein binding, peptide binding, RNA recognition motif; 1.40A {Homo sapiens} PDB: 3zzz_A

Probab=99.43  E-value=7.8e-13  Score=106.57  Aligned_cols=73  Identities=18%  Similarity=0.165  Sum_probs=65.6

Q ss_pred             cEEEEeCCCCCCCHHHHHHHhccCCCceEEEEeecCCcCce-EEEEecCHHHHHHH-HhcCCCeecC--eeEEEEecCC
Q 026156            6 YVAEVVGLSPNATEKDIHEFFSHCGDPVHVEIIRSGECGGT-AYVTFSNAYALETA-VLLSGATIVD--QPVCIIRWGE   80 (242)
Q Consensus         6 ~tV~VsNLs~~~TE~dLrefFs~~G~I~~V~l~~~~~~~~~-AfV~F~~~~aA~tA-l~Lng~~l~g--~~I~V~~a~~   80 (242)
                      ..|||+||++.+|+++|+++|+.||+|.+|.+....  .++ |||+|.++++|..| ..|||..|.|  +.|+|..+..
T Consensus        29 L~I~V~NL~~~vte~~L~~lFs~yG~V~~V~i~~~~--~gfqAFVef~~~~~A~~Ai~~LnG~~i~g~~~~LrI~~ak~  105 (130)
T 3zzy_A           29 LRIIVENLFYPVTLDVLHQIFSKFGTVLKIITFTKN--NQFQALLQYADPVSAQHAKLSLDGQNIYNACCTLRIDFSKL  105 (130)
T ss_dssp             EEEEEESCCSCCCHHHHHHHHTTSSCEEEEEEEEET--TEEEEEEEESCHHHHHHHHHHHTTCEEETTEEEEEEEECSC
T ss_pred             EEEEECCCCCCCCHHHHHHHHhCcCCEEEEEEEcCC--CCcEEEEEECCHHHHHHHHHHcCCCeecCCCcEEEEEecCC
Confidence            568999999999999999999999999999988643  356 99999999999999 6999999988  8999987654

>2g4b_A Splicing factor U2AF 65 kDa subunit; protein-RNA complex, RNA splicing factor, RNA recognition motif, RNA binding protein/RNA complex; 2.50A {Homo sapiens} PDB: 2u2f_A

Probab=99.43  E-value=5.4e-13  Score=107.42  Aligned_cols=76  Identities=21%  Similarity=0.270  Sum_probs=67.8

Q ss_pred             CCcEEEEeCCCCCCCHHHHHHHhccC----C-------CceEEEEeecCCcCceEEEEecCHHHHHHHHhcCCCeecCee
Q 026156            4 GGYVAEVVGLSPNATEKDIHEFFSHC----G-------DPVHVEIIRSGECGGTAYVTFSNAYALETAVLLSGATIVDQP   72 (242)
Q Consensus         4 ~~~tV~VsNLs~~~TE~dLrefFs~~----G-------~I~~V~l~~~~~~~~~AfV~F~~~~aA~tAl~Lng~~l~g~~   72 (242)
                      ..++|||+|||+.+|+++|+++|+.|    |       .|.++.+.++   .++|||+|.++++|..|+.|||..|.|++
T Consensus         3 ~~~~l~V~nLp~~~t~~~l~~~F~~~g~~~g~~~~~~~~v~~~~~~~~---~g~afV~f~~~~~A~~A~~~~~~~~~g~~   79 (172)
T 2g4b_A            3 SARRLYVGNIPFGITEEAMMDFFNAQMRLGGLTQAPGNPVLAVQINQD---KNFAFLEFRSVDETTQAMAFDGIIFQGQS   79 (172)
T ss_dssp             GGGEEEEESCCTTCCHHHHHHHHHHHHHHTTCCSSSSCSEEEEEEETT---TTEEEEEESSHHHHHHHGGGTTCEETTEE
T ss_pred             cccEEEEcCCCcccCHHHHHHHHHHHhhhcccccCCCCceeeeEecCC---CCEEEEEeCCHHHHHHHHHhCCcEecCce
Confidence            45899999999999999999999999    7       7888877654   57999999999999999999999999999


Q ss_pred             EEEEecCCCC
Q 026156           73 VCIIRWGEYT   82 (242)
Q Consensus        73 I~V~~a~~~~   82 (242)
                      |.|....+..
T Consensus        80 i~v~~~~~~~   89 (172)
T 2g4b_A           80 LKIRRPHDYQ   89 (172)
T ss_dssp             CEEECCSSCC
T ss_pred             eeecCCcccC
Confidence            9999765543

>2cq2_A Hypothetical protein LOC91801; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1

Probab=99.42  E-value=2.5e-13  Score=107.16  Aligned_cols=74  Identities=12%  Similarity=0.148  Sum_probs=65.5

Q ss_pred             CcEEEE--eCCCCCCCHHHHHHHhccCCCceEEEEeecCCcCceEEEEecCHHHHHHH-HhcCCCee-----cCeeEEEE
Q 026156            5 GYVAEV--VGLSPNATEKDIHEFFSHCGDPVHVEIIRSGECGGTAYVTFSNAYALETA-VLLSGATI-----VDQPVCII   76 (242)
Q Consensus         5 ~~tV~V--sNLs~~~TE~dLrefFs~~G~I~~V~l~~~~~~~~~AfV~F~~~~aA~tA-l~Lng~~l-----~g~~I~V~   76 (242)
                      .++|||  +||++.++|++|+++|+.||.|.+|.|..+   .+||||+|.++++|+.| ..|||..|     .|++|.|.
T Consensus        25 t~~L~V~Ng~L~~~~te~~L~~~F~~fG~v~~v~i~~~---rgfaFV~f~~~~~A~~Ai~~lnG~~~~~~lg~g~~l~v~  101 (114)
T 2cq2_A           25 TQSLVVANGGLGNGVSRNQLLPVLEKCGLVDALLMPPN---KPYSFARYRTTEESKRAYVTLNGKEVVDDLGQKITLYLN  101 (114)
T ss_dssp             CSEEEEETCTGGGTCCHHHHHHHHHHHSCEEEEECCTT---CSCEEEEESSHHHHHHHHHHTTTCEEECTTSCEEECEEE
T ss_pred             CCEEEEECCCCCCCCCHHHHHHHHHhcCCeEEEEEeCC---CCEEEEEECCHHHHHHHHHHhCCCEEccccCCCcEEEEE
Confidence            368999  669999999999999999999999998753   46999999999999999 57999999     68899998


Q ss_pred             ecCCC
Q 026156           77 RWGEY   81 (242)
Q Consensus        77 ~a~~~   81 (242)
                      .+.+.
T Consensus       102 ~a~~~  106 (114)
T 2cq2_A          102 FVEKV  106 (114)
T ss_dssp             EESCC
T ss_pred             ecccC
Confidence            77543

>2cjk_A Nuclear polyadenylated RNA-binding protein 4; HRP1, RNA-binding, RNA processing, mRNA processing, nonsense-mediated mRNA decay, cleavage; NMR {Saccharomyces cerevisiae} PDB: 2km8_C

Probab=99.42  E-value=3.7e-13  Score=107.90  Aligned_cols=74  Identities=16%  Similarity=0.288  Sum_probs=65.9

Q ss_pred             CcEEEEeCCCCCCCHHHHHHHhccCCCceEEEEeecCC---cCceEEEEecCHHHHHHHHhcCCCeecCeeEEEEecC
Q 026156            5 GYVAEVVGLSPNATEKDIHEFFSHCGDPVHVEIIRSGE---CGGTAYVTFSNAYALETAVLLSGATIVDQPVCIIRWG   79 (242)
Q Consensus         5 ~~tV~VsNLs~~~TE~dLrefFs~~G~I~~V~l~~~~~---~~~~AfV~F~~~~aA~tAl~Lng~~l~g~~I~V~~a~   79 (242)
                      .++|||+|||+.+|+++|+++|+.||.|.+|.++++..   ..++|||+|.++++|..|+. ++..|.|+.|.|..+.
T Consensus         3 ~~~l~v~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~-~~~~~~g~~i~v~~~~   79 (167)
T 2cjk_A            3 SCKMFIGGLNWDTTEDNLREYFGKYGTVTDLKIMKDPATGRSRGFGFLSFEKPSSVDEVVK-TQHILDGKVIDPKRAI   79 (167)
T ss_dssp             GGEEEECSCCTTCCHHHHHHHHTTTCCEEEEECCCCTTTSSCCSCEEEEESSTHHHHHHHH-SCCEETTEECCCEECC
T ss_pred             CcEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEEECCCCCCccceEEEEEccHHHHHHHHh-cccccCCeEccccccc
Confidence            47999999999999999999999999999999997643   34799999999999999976 4788999999888653

>2e5i_A Heterogeneous nuclear ribonucleoprotein L-like; RRM domain, RBD, structural genomics, NPPSFA; NMR {Mus musculus}

Probab=99.42  E-value=1e-12  Score=104.80  Aligned_cols=73  Identities=18%  Similarity=0.151  Sum_probs=64.2

Q ss_pred             cEEEEeCCCCCCCHHHHHHHhccCCCceEEEEeecCCcCce-EEEEecCHHHHHHH-HhcCCCeecC--eeEEEEecCCC
Q 026156            6 YVAEVVGLSPNATEKDIHEFFSHCGDPVHVEIIRSGECGGT-AYVTFSNAYALETA-VLLSGATIVD--QPVCIIRWGEY   81 (242)
Q Consensus         6 ~tV~VsNLs~~~TE~dLrefFs~~G~I~~V~l~~~~~~~~~-AfV~F~~~~aA~tA-l~Lng~~l~g--~~I~V~~a~~~   81 (242)
                      ..|||+||++.+|+++|+++|+.||.|.+|.|...   .++ |||+|.++++|..| ..|||..|.|  +.|.|..+.+.
T Consensus        26 l~l~V~NL~~~vt~~~L~~~Fs~yG~V~~v~i~~~---~Gf~aFVef~~~~~A~~A~~~LnG~~i~g~~~~l~V~~Ak~~  102 (124)
T 2e5i_A           26 LLLSIQNPLYPITVDVLYTVCNPVGKVQRIVIFKR---NGIQAMVEFESVLCAQKAKAALNGADIYAGCCTLKIEYARPT  102 (124)
T ss_dssp             EEEEEESCCSCCCHHHHHHHHTTTSCEEEEEEEES---SSEEEEEEESSHHHHHHHHHHHTTCCCBTTBSEEEEECCSCS
T ss_pred             EEEEEcCcCCCCCHHHHHHHHHhcCCEEEEEEEeC---CCCEEEEEECCHHHHHHHHHHhCCCEecCCCeEEEEEEecCC
Confidence            34789999999999999999999999999999753   375 99999999999999 5899999987  68999876543

>2yh0_A Splicing factor U2AF 65 kDa subunit; PRE-mRNA splicing, transcription, RNA binding protein, mRNA processing; NMR {Homo sapiens} PDB: 2yh1_A

Probab=99.41  E-value=1.1e-12  Score=107.96  Aligned_cols=77  Identities=14%  Similarity=0.270  Sum_probs=69.2

Q ss_pred             CCcEEEEeCCCCCCCHHHHHHHhccCCCceEEEEeecCC---cCceEEEEecCHHHHHHHH-hcCCCeecCeeEEEEecC
Q 026156            4 GGYVAEVVGLSPNATEKDIHEFFSHCGDPVHVEIIRSGE---CGGTAYVTFSNAYALETAV-LLSGATIVDQPVCIIRWG   79 (242)
Q Consensus         4 ~~~tV~VsNLs~~~TE~dLrefFs~~G~I~~V~l~~~~~---~~~~AfV~F~~~~aA~tAl-~Lng~~l~g~~I~V~~a~   79 (242)
                      ..++|||+|||+.+++++|+++|+.||.|.+|.+..+..   ..++|||+|.++++|..|+ .|||..|+|+.|.|..+.
T Consensus       113 ~~~~l~v~nl~~~~~~~~l~~~f~~~G~v~~~~~~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~  192 (198)
T 2yh0_A          113 SAHKLFIGGLPNYLNDDQVKELLTSFGPLKAFNLVKDSATGLSKGYAFCEYVDINVTDQAIAGLNGMQLGDKKLLVQRAS  192 (198)
T ss_dssp             CCCEEEEECCCTTCCHHHHHHHHHTBSCEEEEEEEECTTTCSEEEEEEEEESSSSHHHHHHHHHTTCEETTEECEEEESC
T ss_pred             CCCEEEEeCCCCCCCHHHHHHHHHHcCCccEEEEeecCCCCCcceEEEEEECCHHHHHHHHHHcCCCEECCEEEEEEECC
Confidence            348999999999999999999999999999999998743   2469999999999999995 699999999999999764


Q ss_pred             C
Q 026156           80 E   80 (242)
Q Consensus        80 ~   80 (242)
                      +
T Consensus       193 ~  193 (198)
T 2yh0_A          193 V  193 (198)
T ss_dssp             C
T ss_pred             C
Confidence            3

>3pgw_A U1-A; protein-RNA complex, U1 snRNA, SM fold, SM core, RRM, splici SNRNPS, splicing factors; HET: DNA; 4.40A {Homo sapiens} PDB: 1fht_A 2u1a_A 2aym_A 2b0g_A

Probab=99.41  E-value=8.2e-13  Score=115.36  Aligned_cols=77  Identities=19%  Similarity=0.296  Sum_probs=70.0

Q ss_pred             CcEEEEeCCCCCCCHHHHH----HHhccCCCceEEEEeecCCcCceEEEEecCHHHHHHHH-hcCCCeecCeeEEEEecC
Q 026156            5 GYVAEVVGLSPNATEKDIH----EFFSHCGDPVHVEIIRSGECGGTAYVTFSNAYALETAV-LLSGATIVDQPVCIIRWG   79 (242)
Q Consensus         5 ~~tV~VsNLs~~~TE~dLr----efFs~~G~I~~V~l~~~~~~~~~AfV~F~~~~aA~tAl-~Lng~~l~g~~I~V~~a~   79 (242)
                      .++|||+||++.+|+++|+    ++|+.||.|.+|.+.+.+...++|||+|.+.++|..|+ .|||..|.|+.|.|..+.
T Consensus         9 ~~~l~V~nlp~~~~~~~l~~~L~~~F~~~G~i~~v~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~   88 (282)
T 3pgw_A            9 NHTIYINNLNEKIKKDELKKSLYAIFSQFGQILDILVSRSLKMRGQAFVIFKEVSSATNALRSMQGFPFYDKPMRIQYAK   88 (282)
T ss_pred             CCEEEEeCCCCCCCHHHHHHHHHHHHhccCCeEEEEEcCCCCcceEEEEEECCHHHHHHHHHHhcCCeeCCcEEEEEEec
Confidence            4799999999999999977    89999999999999986656689999999999999996 999999999999999775


Q ss_pred             CC
Q 026156           80 EY   81 (242)
Q Consensus        80 ~~   81 (242)
                      ..
T Consensus        89 ~~   90 (282)
T 3pgw_A           89 TD   90 (282)
T ss_pred             cC
Confidence            43

>2adc_A Polypyrimidine tract-binding protein 1; RBD, RRM, protein-RNA complex, RNA binding protein/RNA complex; NMR {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 2evz_A

Probab=99.41  E-value=5.1e-13  Score=114.39  Aligned_cols=76  Identities=24%  Similarity=0.328  Sum_probs=69.5

Q ss_pred             CCcEEEEeCCCC-CCCHHHHHHHhccCCCceEEEEeecCCcCceEEEEecCHHHHHHHH-hcCCCeecCeeEEEEecCCC
Q 026156            4 GGYVAEVVGLSP-NATEKDIHEFFSHCGDPVHVEIIRSGECGGTAYVTFSNAYALETAV-LLSGATIVDQPVCIIRWGEY   81 (242)
Q Consensus         4 ~~~tV~VsNLs~-~~TE~dLrefFs~~G~I~~V~l~~~~~~~~~AfV~F~~~~aA~tAl-~Lng~~l~g~~I~V~~a~~~   81 (242)
                      ..++|||+|||+ .+++++|+++|+.||.|.+|.+.++.  .++|||+|.++++|..|+ .|||..|.|+.|.|..+...
T Consensus        33 ~~~~l~V~nLp~~~~te~~L~~~F~~~G~i~~v~i~~~~--~g~afV~F~~~~~A~~Ai~~l~g~~~~g~~l~v~~a~~~  110 (229)
T 2adc_A           33 GNSVLLVSNLNPERVTPQSLFILFGVYGDVQRVKILFNK--KENALVQMADGNQAQLAMSHLNGHKLHGKPIRITLSKHQ  110 (229)
T ss_dssp             CCSEEEEESCCTTTCCHHHHHHHHHHHTCEEEEEECCTT--SCCEEEEESCHHHHHHHHHHHTTCBCSSSBCEEECCSCC
T ss_pred             CCCEEEEeCCCcccCCHHHHHHHHHhCCCeEEEEEEECC--CCEEEEEECCHHHHHHHHHHhCCCeECCeEEEEEEecCc
Confidence            457999999999 99999999999999999999999865  579999999999999996 69999999999999977543

>2diu_A KIAA0430 protein; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.41  E-value=9.3e-13  Score=101.00  Aligned_cols=73  Identities=16%  Similarity=0.246  Sum_probs=63.1

Q ss_pred             CCcEEEEeCCCCCCCHHH----HHHHhccC-CCceEEEEeecCCcCceEEEEecCHHHHHHH-HhcCCCeecCeeEEEEe
Q 026156            4 GGYVAEVVGLSPNATEKD----IHEFFSHC-GDPVHVEIIRSGECGGTAYVTFSNAYALETA-VLLSGATIVDQPVCIIR   77 (242)
Q Consensus         4 ~~~tV~VsNLs~~~TE~d----LrefFs~~-G~I~~V~l~~~~~~~~~AfV~F~~~~aA~tA-l~Lng~~l~g~~I~V~~   77 (242)
                      ..++|||+|||.++++++    |+++|+.| |+|.+|.       .++|||.|.+.++|..| ..|||..|.|++|+|..
T Consensus         8 ~~T~lYV~NL~~~~~~~~lk~~L~~lF~~yGG~Vl~Vt-------gG~AfV~F~~~esA~~A~~~l~G~~l~gr~i~v~~   80 (96)
T 2diu_A            8 CHTLLYVYNLPANKDGKSVSNRLRRLSDNCGGKVLSIT-------GCSAILRFINQDSAERAQKRMENEDVFGNRIIVSF   80 (96)
T ss_dssp             SSEEEEEESCCTTSCHHHHHHHHHHHHHTTTCCEEECC-------TTCEEEEESSHHHHHHHHHHHTTCCSSSSCCEEES
T ss_pred             cceEEEEeCCCCcCCHHHHHHHHHHHHHHcCCeeEEEe-------cCEEEEEECCHHHHHHHHHHhcCCccCCceEEEEe
Confidence            334599999999999988    55899999 5999992       38999999999999999 58999999999999998


Q ss_pred             cCCCCC
Q 026156           78 WGEYTD   83 (242)
Q Consensus        78 a~~~~~   83 (242)
                      +....+
T Consensus        81 A~~~sd   86 (96)
T 2diu_A           81 TPKNRE   86 (96)
T ss_dssp             SCCSCC
T ss_pred             cCCCcc
Confidence            765444

>2ghp_A U4/U6 snRNA-associated splicing factor PRP24; RNA chaperone, RNA binding domain, RNA recognition motif, SP factor, snRNP, spliceosome; 2.70A {Saccharomyces cerevisiae} SCOP: d.58.7.1 d.58.7.1 d.58.7.1 PDB: 2go9_A 2kh9_A

Probab=99.41  E-value=5.9e-13  Score=116.85  Aligned_cols=76  Identities=16%  Similarity=0.214  Sum_probs=68.8

Q ss_pred             CCcEEEEeCCCCCCCHHHHHHHhccCCCceEEEEeecCC-cCceEEEEecCHHHHHHHHhcCCCeecCeeEEEEecC
Q 026156            4 GGYVAEVVGLSPNATEKDIHEFFSHCGDPVHVEIIRSGE-CGGTAYVTFSNAYALETAVLLSGATIVDQPVCIIRWG   79 (242)
Q Consensus         4 ~~~tV~VsNLs~~~TE~dLrefFs~~G~I~~V~l~~~~~-~~~~AfV~F~~~~aA~tAl~Lng~~l~g~~I~V~~a~   79 (242)
                      ..++|||+|||+.+|+++|+++|+.||+|.+|.|.++.. ..++|||+|.++++|..|+.|||..|.|+.|.|.++.
T Consensus        40 ~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~g~afV~f~~~~~A~~A~~~~~~~~~g~~i~v~~~~  116 (292)
T 2ghp_A           40 ELTTVLVKNLPKSYNQNKVYKYFKHCGPIIHVDVADSLKKNFRFARIEFARYDGALAAITKTHKVVGQNEIIVSHLT  116 (292)
T ss_dssp             --CEEEEEEECTTCCHHHHHHHHGGGSCEEEEEEEECTTSSSEEEEEEESSHHHHHHHHTTTTCEETTEECEEEECC
T ss_pred             CCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECCCCCcEEEEEEECCHHHHHHHHHhCCcEeCCcEEEEEECC
Confidence            457999999999999999999999999999999998644 3579999999999999999999999999999998764

>2yh0_A Splicing factor U2AF 65 kDa subunit; PRE-mRNA splicing, transcription, RNA binding protein, mRNA processing; NMR {Homo sapiens} PDB: 2yh1_A

Probab=99.40  E-value=9.7e-13  Score=108.22  Aligned_cols=77  Identities=21%  Similarity=0.247  Sum_probs=66.9

Q ss_pred             CCcEEEEeCCCCCCCHHHHHHHhccC----C-------CceEEEEeecCCcCceEEEEecCHHHHHHHHhcCCCeecCee
Q 026156            4 GGYVAEVVGLSPNATEKDIHEFFSHC----G-------DPVHVEIIRSGECGGTAYVTFSNAYALETAVLLSGATIVDQP   72 (242)
Q Consensus         4 ~~~tV~VsNLs~~~TE~dLrefFs~~----G-------~I~~V~l~~~~~~~~~AfV~F~~~~aA~tAl~Lng~~l~g~~   72 (242)
                      ..++|||+|||+.+|+++|+++|+.|    |       .|.++.+.+.   .++|||+|.++++|+.|+.|||..|.|++
T Consensus         3 ~~~~l~V~nLp~~~te~~l~~~F~~~g~i~g~~~~~~~~v~~~~~~~~---~g~afV~F~~~~~A~~Al~l~g~~~~g~~   79 (198)
T 2yh0_A            3 MARRLYVGNIPFGITEEAMMDFFNAQMRLGGLTQAPGNPVLAVQINQD---KNFAFLEFRSVDETTQAMAFDGIIFQGQS   79 (198)
T ss_dssp             -CCEEEEESCCTTCCHHHHHHHHHHHHHHHTCCSSSSCSEEEEEEETT---TTEEEEEESCSHHHHHHGGGTTEEETTEE
T ss_pred             ceeEEEEcCCCCCCCHHHHHHHHHHHHhhcccccCCCCceEEeEecCC---CCEEEEEeCCHHHHHHHHHhcCCEEcCce
Confidence            34899999999999999999999999    5       6777776533   57999999999999999999999999999


Q ss_pred             EEEEecCCCCC
Q 026156           73 VCIIRWGEYTD   83 (242)
Q Consensus        73 I~V~~a~~~~~   83 (242)
                      |.|..+.+...
T Consensus        80 i~v~~~~~~~~   90 (198)
T 2yh0_A           80 LKIRRPHDYQP   90 (198)
T ss_dssp             EEEECCCCCCC
T ss_pred             EEEeCCCCCCC
Confidence            99998766543

>1fje_B Nucleolin RBD12, protein C23; RNP, RRM, RNA binding domain, RNA-protein complex, nucleolus, structural protein/RNA complex; NMR {Mesocricetus auratus} SCOP: d.58.7.1 d.58.7.1 PDB: 1rkj_A 2krr_A

Probab=99.40  E-value=8.3e-13  Score=107.01  Aligned_cols=74  Identities=27%  Similarity=0.326  Sum_probs=65.0

Q ss_pred             CcEEEEeCCCCCCCHHHHHHHhccCCCceEEEEeecCCcCceEEEEecCHHHHHHHH-hcCCCeecCeeEEEEecCC
Q 026156            5 GYVAEVVGLSPNATEKDIHEFFSHCGDPVHVEIIRSGECGGTAYVTFSNAYALETAV-LLSGATIVDQPVCIIRWGE   80 (242)
Q Consensus         5 ~~tV~VsNLs~~~TE~dLrefFs~~G~I~~V~l~~~~~~~~~AfV~F~~~~aA~tAl-~Lng~~l~g~~I~V~~a~~   80 (242)
                      .++|||+|||+.+|+++|+++|+.||.|..+  ...+...++|||+|.++++|..|+ .|||..|+|+.|.|..+.+
T Consensus        99 ~~~l~v~nlp~~~t~~~l~~~F~~~g~v~~~--~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~i~v~~a~~  173 (175)
T 1fje_B           99 ARTLLAKNLSFNITEDELKEVFEDALEIRLV--SQDGKSKGIAYIEFKSEADAEKNLEEKQGAEIDGRSVSLYYTGE  173 (175)
T ss_dssp             GGEEEEESCCSSCCHHHHHHHCTTCSEEEEE--CSSSSCCSEEEEECSSHHHHHHHHHHHTEEEETTEEEEEEECSS
T ss_pred             CCEEEEeCCCCCCCHHHHHHHHHhcCeEEEe--cCCCCCceEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEecCC
Confidence            4799999999999999999999999999887  333344579999999999999995 5999999999999997653

>2j8a_A Histone-lysine N-methyltransferase, H3 lysine-4 specific; histone methyltransferase, RRM fold, telomere, nuclear protein; 3.0A {Saccharomyces cerevisiae}

Probab=99.38  E-value=1.1e-12  Score=106.20  Aligned_cols=72  Identities=17%  Similarity=0.173  Sum_probs=63.1

Q ss_pred             cEEEEeCC----CCCCCHHHHHHHhccCCCceEEEEeecCCc---CceEEEEecC----HHH----HHHH-H--hcCCCe
Q 026156            6 YVAEVVGL----SPNATEKDIHEFFSHCGDPVHVEIIRSGEC---GGTAYVTFSN----AYA----LETA-V--LLSGAT   67 (242)
Q Consensus         6 ~tV~VsNL----s~~~TE~dLrefFs~~G~I~~V~l~~~~~~---~~~AfV~F~~----~~a----A~tA-l--~Lng~~   67 (242)
                      ..|||+||    |+.++|.+|+++|+.||+|.+++++.|+++   .+||||+|.+    +..    |.+| .  .|||..
T Consensus         3 ~kI~VgnL~~~~~~~tte~~Lk~~Fs~fGeV~~~~li~Dp~Tg~slGfgfVef~d~~g~~d~a~kAA~kAi~~~~lng~~   82 (136)
T 2j8a_A            3 CEIVVYPAQDSTTTNIQDISIKNYFKKYGEISHFEAFNDPNSALPLHVYLIKYASSDGKINDAAKAAFSAVRKHESSGCF   82 (136)
T ss_dssp             CEEEEEESSSSCCCCCCHHHHHHHHHTTSCCSEEEEEECTTTCCEEEEEEEECC------CCHHHHHHHHHHHTTTTCEE
T ss_pred             cEEEEeCCCCCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCceeeEEEEEECCCCCCcchHHHHHHHHHHHhhhcCCe
Confidence            48999999    999999999999999999999999999775   4799999996    433    7778 4  589999


Q ss_pred             ecCeeEEEEe
Q 026156           68 IVDQPVCIIR   77 (242)
Q Consensus        68 l~g~~I~V~~   77 (242)
                      |+|+.|+|..
T Consensus        83 I~Gr~irV~l   92 (136)
T 2j8a_A           83 IMGFKFEVIL   92 (136)
T ss_dssp             ETTEEEEEEE
T ss_pred             ecCcEEEEEE
Confidence            9999999985

>3pgw_S U1-70K; protein-RNA complex, U1 snRNA, SM fold, SM core, RRM, splici SNRNPS, splicing factors; HET: DNA; 4.40A {Homo sapiens} PDB: 3cw1_K 2l5i_A 2l5j_A*

Probab=99.38  E-value=1.3e-12  Score=123.58  Aligned_cols=75  Identities=16%  Similarity=0.180  Sum_probs=68.7

Q ss_pred             cEEEEeCCCCCCCHHHHHHHhccCCCceEEEEeecCC---cCceEEEEecCHHHHHHHH-hcCCCeecCeeEEEEecCC
Q 026156            6 YVAEVVGLSPNATEKDIHEFFSHCGDPVHVEIIRSGE---CGGTAYVTFSNAYALETAV-LLSGATIVDQPVCIIRWGE   80 (242)
Q Consensus         6 ~tV~VsNLs~~~TE~dLrefFs~~G~I~~V~l~~~~~---~~~~AfV~F~~~~aA~tAl-~Lng~~l~g~~I~V~~a~~   80 (242)
                      ++|||+|||+.+|+++|++||+.||.|..|.|+.+..   ..+||||+|.++++|..|+ .|||..|.|+.|.|..+..
T Consensus       103 ~~lfV~nL~~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~kG~aFV~F~~~e~A~~Ai~~lng~~i~gr~i~V~~a~~  181 (437)
T 3pgw_S          103 KTLFVARVNYDTTESKLRREFEVYGPIKRIHMVYSKRSGKPRGYAFIEYEHERDMHSAYKHADGKKIDGRRVLVDVERG  181 (437)
T ss_pred             CEEEEeCCCCCCCHHHHHHHHHHcCCeeEEEeeccCCCCCccceEEEeeccHHHHHHHHHHcCCCEECCEEEEEEEeCC
Confidence            6999999999999999999999999999999987632   3579999999999999996 8999999999999997754

>3nmr_A Cugbp ELAV-like family member 1; RRM, PRE-mRNA splicing, RNA binding protein-RNA complex; 1.85A {Homo sapiens} PDB: 3nna_A 3nnc_A 2dhs_A 3nnh_A

Probab=99.37  E-value=1.3e-12  Score=104.98  Aligned_cols=74  Identities=26%  Similarity=0.349  Sum_probs=65.7

Q ss_pred             CcEEEEeCCCCCCCHHHHHHHhccCCCceEEEEeecCC--cCceEEEEecCHHHHHHHH-hcCCCeecC---eeEEEEec
Q 026156            5 GYVAEVVGLSPNATEKDIHEFFSHCGDPVHVEIIRSGE--CGGTAYVTFSNAYALETAV-LLSGATIVD---QPVCIIRW   78 (242)
Q Consensus         5 ~~tV~VsNLs~~~TE~dLrefFs~~G~I~~V~l~~~~~--~~~~AfV~F~~~~aA~tAl-~Lng~~l~g---~~I~V~~a   78 (242)
                      .++|||+|||+.+|+++|+++|+.||.|.+|.+.++..  ..++|||+|.++++|..|+ .|||..+.+   ++|.|..+
T Consensus        95 ~~~l~v~nl~~~~t~~~l~~~F~~~G~i~~v~~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~~g~~~~l~V~~a  174 (175)
T 3nmr_A           95 DRKLFIGMISKKCTENDIRVMFSSFGQIEECRILRGPDGLSRGCAFVTFTTRAMAQTAIKAMHQAQTMEGCSSPMVVKFA  174 (175)
T ss_dssp             GSEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTSCEEEEEEEEESSHHHHHHHHHHHTTSCCCTTCSSCCEEEEC
T ss_pred             CCeEEEcCCCCcCCHHHHHHHHHhCCCEEEEEEEECCCCCEEEEEEEEECCHHHHHHHHHHhcCCcccCCCCCCeEEEec
Confidence            47899999999999999999999999999999997643  2469999999999999995 999988763   89999854

>3sde_A Paraspeckle component 1; RRM, anti parallel right handed coiled-coil, NOPS, DBHS, RNA protein, RNA binding; 1.90A {Homo sapiens} PDB: 3sde_B

Probab=99.37  E-value=1.6e-12  Score=113.55  Aligned_cols=74  Identities=24%  Similarity=0.311  Sum_probs=67.5

Q ss_pred             CCcEEEEeCCCCCCCHHHHHHHhccCCCceEEEEeecCCcCceEEEEecCHHHHHHHH-hcCCCeecCeeEEEEecCC
Q 026156            4 GGYVAEVVGLSPNATEKDIHEFFSHCGDPVHVEIIRSGECGGTAYVTFSNAYALETAV-LLSGATIVDQPVCIIRWGE   80 (242)
Q Consensus         4 ~~~tV~VsNLs~~~TE~dLrefFs~~G~I~~V~l~~~~~~~~~AfV~F~~~~aA~tAl-~Lng~~l~g~~I~V~~a~~   80 (242)
                      ..++|||+|||+.+|+++|+++|+.||.|.+|.+.++   .++|||+|.++++|..|+ .|||..|.|+.|.|..+.+
T Consensus        21 ~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~---kg~afV~f~~~~~A~~A~~~l~g~~i~g~~l~v~~a~~   95 (261)
T 3sde_A           21 QRCRLFVGNLPTDITEEDFKRLFERYGEPSEVFINRD---RGFGFIRLESRTLAEIAKAELDGTILKSRPLRIRFATH   95 (261)
T ss_dssp             GGGEEEEESCCTTCCHHHHHHHTGGGCCCSEEEEETT---TTEEEEECSSHHHHHHHHHHHTTCEETTEECEEEECCC
T ss_pred             CCCEEEEECCCCCCCHHHHHHHHHhcCCEEEEEEeCC---CcEEEEEECCHHHHHHHHHHcCCcEECCceeEeeeccc
Confidence            3479999999999999999999999999999999754   479999999999999996 5999999999999997643

>1b7f_A Protein (SXL-lethal protein), RNA (5'-R(P*GP*UP*UP*GP*UP*UP*UP*UP*UP*UP*UP*U)-3; splicing regulation, RNP domain, RNA complex; 2.60A {Drosophila melanogaster} SCOP: d.58.7.1 d.58.7.1 PDB: 3sxl_A* 1sxl_A 2sxl_A

Probab=99.37  E-value=2.3e-12  Score=103.11  Aligned_cols=74  Identities=20%  Similarity=0.295  Sum_probs=66.2

Q ss_pred             CCcEEEEeCCCCCCCHHHHHHHhccCCCceEEEEeecCC---cCceEEEEecCHHHHHHHH-hcCCCeecC--eeEEEEe
Q 026156            4 GGYVAEVVGLSPNATEKDIHEFFSHCGDPVHVEIIRSGE---CGGTAYVTFSNAYALETAV-LLSGATIVD--QPVCIIR   77 (242)
Q Consensus         4 ~~~tV~VsNLs~~~TE~dLrefFs~~G~I~~V~l~~~~~---~~~~AfV~F~~~~aA~tAl-~Lng~~l~g--~~I~V~~   77 (242)
                      ..++|+|+|||+.+++++|+++|+.||.|.++.+.++..   ..++|||+|.++++|..|+ .|||..|.|  ++|.|..
T Consensus        88 ~~~~l~v~nl~~~~t~~~l~~~f~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~~~l~V~~  167 (168)
T 1b7f_A           88 KDTNLYVTNLPRTITDDQLDTIFGKYGSIVQKNILRDKLTGRPRGVAFVRYNKREEAQEAISALNNVIPEGGSQPLSVRL  167 (168)
T ss_dssp             TTCEEEEESCCTTCCHHHHHHHHTSSSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCCCTTCSSCCEEEE
T ss_pred             CCCCEEEeCCCCCCCHHHHHHhhhcCCcEEEEEEEEcCCCCCcceEEEEEECCHHHHHHHHHHhcCCEecCCCeEEEEEe
Confidence            347999999999999999999999999999999998753   2369999999999999995 699999987  9999874

>2ghp_A U4/U6 snRNA-associated splicing factor PRP24; RNA chaperone, RNA binding domain, RNA recognition motif, SP factor, snRNP, spliceosome; 2.70A {Saccharomyces cerevisiae} SCOP: d.58.7.1 d.58.7.1 d.58.7.1 PDB: 2go9_A 2kh9_A

Probab=99.37  E-value=1.4e-12  Score=114.38  Aligned_cols=77  Identities=17%  Similarity=0.214  Sum_probs=69.9

Q ss_pred             CCcEEEEeCCCCC-CCHHHHHHHhccCCCceEEEEeecCC----cCceEEEEecCHHHHHHHHhcCCCeecCeeEEEEec
Q 026156            4 GGYVAEVVGLSPN-ATEKDIHEFFSHCGDPVHVEIIRSGE----CGGTAYVTFSNAYALETAVLLSGATIVDQPVCIIRW   78 (242)
Q Consensus         4 ~~~tV~VsNLs~~-~TE~dLrefFs~~G~I~~V~l~~~~~----~~~~AfV~F~~~~aA~tAl~Lng~~l~g~~I~V~~a   78 (242)
                      ..++|||+|||+. +++++|+++|+.||.|.+|.+..+..    ..++|||+|.++++|..|+.|||..|+|++|.|..+
T Consensus       209 ~~~~l~v~nlp~~~~t~~~l~~~F~~~G~v~~v~i~~~~~~tg~~~g~afV~F~~~~~A~~A~~l~g~~~~g~~i~V~~a  288 (292)
T 2ghp_A          209 EGREIMIRNLSTELLDENLLRESFEGFGSIEKINIPAGQKEHSFNNCCAFMVFENKDSAERALQMNRSLLGNREISVSLA  288 (292)
T ss_dssp             TTTEEEEEEECTTTCCHHHHHHHHGGGSCEEEEECCSCCC---CCCEEEEEEESSHHHHHHHGGGTTEEETTEEEEEEEC
T ss_pred             CCceEEEECCCcccCCHHHHHHHHhccCCeeEEEEEecCCcCCCCceEEEEEeCCHHHHHHHHHhcCCEECCcEEEEEEe
Confidence            3479999999999 99999999999999999999997632    357999999999999999999999999999999976


Q ss_pred             CC
Q 026156           79 GE   80 (242)
Q Consensus        79 ~~   80 (242)
                      .+
T Consensus       289 ~~  290 (292)
T 2ghp_A          289 DK  290 (292)
T ss_dssp             CC
T ss_pred             cC
Confidence            53

>1fje_B Nucleolin RBD12, protein C23; RNP, RRM, RNA binding domain, RNA-protein complex, nucleolus, structural protein/RNA complex; NMR {Mesocricetus auratus} SCOP: d.58.7.1 d.58.7.1 PDB: 1rkj_A 2krr_A

Probab=99.33  E-value=9.9e-13  Score=106.56  Aligned_cols=78  Identities=19%  Similarity=0.251  Sum_probs=65.9

Q ss_pred             CCcEEEEeCCCCCCCHHHHHHHhccCCCceEEEEe--ecCCcCceEEEEecCHHHHHHHHhcCCCeecCeeEEEEecCCC
Q 026156            4 GGYVAEVVGLSPNATEKDIHEFFSHCGDPVHVEII--RSGECGGTAYVTFSNAYALETAVLLSGATIVDQPVCIIRWGEY   81 (242)
Q Consensus         4 ~~~tV~VsNLs~~~TE~dLrefFs~~G~I~~V~l~--~~~~~~~~AfV~F~~~~aA~tAl~Lng~~l~g~~I~V~~a~~~   81 (242)
                      ..++|||+|||+.+|+++|+++|+.||.|..+.+.  ..+...++|||+|.++++|..|+.|||..|.|++|.|..+.+.
T Consensus        12 ~~~~l~V~nLp~~~t~~~l~~~f~~~g~~~~~~~~~~~~~~~~g~afV~f~~~~~a~~A~~l~g~~~~g~~l~v~~~~~~   91 (175)
T 1fje_B           12 TPFNLFIGNLNPNKSVAELKVAISELFAKNDLAVVDVRTGTNRKFGYVDFESAEDLEKALELTGLKVFGNEIKLEKPKGR   91 (175)
T ss_dssp             SSEEEEEECCCTTSCHHHHHHHHHHHHHHHTCCCCEEEEETTTTEEEEEESSHHHHHHHHHGGGEEETTEEEEEECCCCS
T ss_pred             CCcEEEEeCCCCCCCHHHHHHHHHHhCCcceEEEEECCCCccccEEEEEECCHHHHHHHHhcCCCEeCCeEEEEecCCCc
Confidence            45899999999999999999999999987663332  2233457999999999999999999999999999999977543

>1fxl_A Paraneoplastic encephalomyelitis antigen HUD; protein-RNA complex, AU-rich element, transcription/RNA complex; 1.80A {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 1g2e_A 1fnx_H 1d8z_A 1d9a_A 3hi9_A

Probab=99.33  E-value=3.8e-12  Score=101.32  Aligned_cols=72  Identities=21%  Similarity=0.351  Sum_probs=64.1

Q ss_pred             CcEEEEeCCCCCCCHHHHHHHhccCCCceEEEEeecCC---cCceEEEEecCHHHHHHHH-hcCCCeecCee--EEEE
Q 026156            5 GYVAEVVGLSPNATEKDIHEFFSHCGDPVHVEIIRSGE---CGGTAYVTFSNAYALETAV-LLSGATIVDQP--VCII   76 (242)
Q Consensus         5 ~~tV~VsNLs~~~TE~dLrefFs~~G~I~~V~l~~~~~---~~~~AfV~F~~~~aA~tAl-~Lng~~l~g~~--I~V~   76 (242)
                      .++|+|+|||+.+++++|+++|+.||.|.++.+..+..   ..++|||+|.++++|..|+ .|||..|.|+.  |.|.
T Consensus        88 ~~~l~v~nl~~~~t~~~l~~~f~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~~~i~v~  165 (167)
T 1fxl_A           88 DANLYVSGLPKTMTQKELEQLFSQYGRIITSRILVDQVTGVSRGVGFIRFDKRIEAEEAIKGLNGQKPSGATEPITVK  165 (167)
T ss_dssp             TCEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCCCTTCSSCCEEE
T ss_pred             CCcEEECCCCCcCCHHHHHHHHHhcCCEeEEEEEecCCCCCccceEEEEeCCHHHHHHHHHHhcCCccCCCccceEEE
Confidence            47899999999999999999999999999999997643   2479999999999999995 69999999975  6665

>3pgw_A U1-A; protein-RNA complex, U1 snRNA, SM fold, SM core, RRM, splici SNRNPS, splicing factors; HET: DNA; 4.40A {Homo sapiens} PDB: 1fht_A 2u1a_A 2aym_A 2b0g_A

Probab=99.33  E-value=4.8e-12  Score=110.46  Aligned_cols=72  Identities=18%  Similarity=0.196  Sum_probs=66.1

Q ss_pred             CcEEEEeCCCCCCCHHHHHHHhccCCCceEEEEeecCCcCceEEEEecCHHHHHHHH-hcCCCeec-CeeEEEEec
Q 026156            5 GYVAEVVGLSPNATEKDIHEFFSHCGDPVHVEIIRSGECGGTAYVTFSNAYALETAV-LLSGATIV-DQPVCIIRW   78 (242)
Q Consensus         5 ~~tV~VsNLs~~~TE~dLrefFs~~G~I~~V~l~~~~~~~~~AfV~F~~~~aA~tAl-~Lng~~l~-g~~I~V~~a   78 (242)
                      .++|||+||++.+++++|+++|+.||.|.+|.+..+.  .++|||+|.+.++|..|+ .|||..|+ |+.|.|..+
T Consensus       207 ~~~l~v~nl~~~~~~~~l~~~F~~~G~i~~v~~~~~~--~g~afV~f~~~~~A~~A~~~l~g~~~~~g~~l~v~~a  280 (282)
T 3pgw_A          207 NHILFLTNLPEETNELMLSMLFNQFPGFKEVRLVPGR--HDIAFVEFDNEVQAGAARDALQGFKITQNNAMKISFA  280 (282)
T ss_pred             CCEEEEeCCCCcCCHHHHHHHHHhcCCeEEEEEecCC--CcEEEEEeCCHHHHHHHHHHcCCcEeCCCCEEEEEEe
Confidence            4789999999999999999999999999999999654  469999999999999995 69999999 999999854

>2dit_A HIV TAT specific factor 1 variant; structural genomics, RRM_1 domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1

Probab=99.33  E-value=8.8e-12  Score=96.05  Aligned_cols=75  Identities=15%  Similarity=0.183  Sum_probs=64.6

Q ss_pred             CcEEEEeCCCCCCC-----------HHHHHHHhccCCCceEEEEeecCCcCceEEEEecCHHHHHHHH-hcCCCeecCee
Q 026156            5 GYVAEVVGLSPNAT-----------EKDIHEFFSHCGDPVHVEIIRSGECGGTAYVTFSNAYALETAV-LLSGATIVDQP   72 (242)
Q Consensus         5 ~~tV~VsNLs~~~T-----------E~dLrefFs~~G~I~~V~l~~~~~~~~~AfV~F~~~~aA~tAl-~Lng~~l~g~~   72 (242)
                      .++|+|.||.....           +++|+++|+.||+|.+|.| .+....++|||+|.++++|..|+ .|||..|+|++
T Consensus        15 s~~l~l~Nl~~~~~~~~~~~~~~~~e~~l~~~f~~~G~v~~v~i-~~~~~~G~afV~f~~~~~A~~Ai~~lng~~~~gr~   93 (112)
T 2dit_A           15 ERVVIIKNMFHPMDFEDDPLVLNEIREDLRVECSKFGQIRKLLL-FDRHPDGVASVSFRDPEEADYCIQTLDGRWFGGRQ   93 (112)
T ss_dssp             CCEEEEESSCCTTHHHHCSHHHHHHHHHHHHHGGGTSCCSEEEE-ETTCTTCEEEEECSCHHHHHHHHHHSTTCEETTEE
T ss_pred             ceEEEEEcCCCHHHhccCHHHHHHHHHHHHHHHHccCCEeEEEE-ecCCCCEEEEEEECCHHHHHHHHHHcCCCEECCcE
Confidence            47899999955433           6899999999999999966 45556689999999999999995 89999999999


Q ss_pred             EEEEecCC
Q 026156           73 VCIIRWGE   80 (242)
Q Consensus        73 I~V~~a~~   80 (242)
                      |.|..+.+
T Consensus        94 l~v~~a~~  101 (112)
T 2dit_A           94 ITAQAWDG  101 (112)
T ss_dssp             CEEEECCS
T ss_pred             EEEEEeCC
Confidence            99998754

>3smz_A Protein raver-1, ribonucleoprotein PTB-binding 1; RNA binding, RNA recognition motif, vincu alpha-actinin, nucleus, RNA binding protein; 1.99A {Homo sapiens} PDB: 3vf0_B* 3h2u_B 3h2v_E

Probab=99.33  E-value=8.3e-12  Score=109.07  Aligned_cols=80  Identities=14%  Similarity=0.153  Sum_probs=71.3

Q ss_pred             CCCcEEEEeCCCCCCCHHHHHHHhccCCCceEEEEeecCC---cCceEEEEecCHHHHHHHH-hcCCCeecCeeEEEEec
Q 026156            3 AGGYVAEVVGLSPNATEKDIHEFFSHCGDPVHVEIIRSGE---CGGTAYVTFSNAYALETAV-LLSGATIVDQPVCIIRW   78 (242)
Q Consensus         3 ~~~~tV~VsNLs~~~TE~dLrefFs~~G~I~~V~l~~~~~---~~~~AfV~F~~~~aA~tAl-~Lng~~l~g~~I~V~~a   78 (242)
                      +..++|||+|||+.+|+++|+++|+.||.|.+|.++.+..   ..++|||+|.++++|..|+ .|||..|+|+.|.|..+
T Consensus        93 ~~~~~l~v~nlp~~~t~~~l~~~f~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~~~~~~g~~i~v~~a  172 (284)
T 3smz_A           93 PTDALLCVANLPPSLTQQQFEELVRPFGSLERCFLVYSERTGQSKGYGFAEYMKKDSAARAKSDLLGKPLGPRTLYVHWT  172 (284)
T ss_dssp             CCSCEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEEC
T ss_pred             CCCCEEEEcCCCCcCCHHHHHHHHHhcCCeeEEEEEeeCCCCccceEEEEEECCHHHHHHHHHHhCCCEeCCcEEEEEEC
Confidence            4567999999999999999999999999999999987643   3469999999999999996 99999999999999987


Q ss_pred             CCCC
Q 026156           79 GEYT   82 (242)
Q Consensus        79 ~~~~   82 (242)
                      .+..
T Consensus       173 ~~~~  176 (284)
T 3smz_A          173 DAGQ  176 (284)
T ss_dssp             CGGG
T ss_pred             CCCC
Confidence            5543

>2pe8_A Splicing factor 45; RRM, protein binding; 2.00A {Homo sapiens} PDB: 2peh_A

Probab=99.33  E-value=7.1e-12  Score=96.63  Aligned_cols=76  Identities=14%  Similarity=0.069  Sum_probs=65.6

Q ss_pred             CCcEEEEeCCCC-----CCCHHHHHHHhccCCCceEEEEeecC----CcCceEEEEecCHHHHHHH-HhcCCCeecCeeE
Q 026156            4 GGYVAEVVGLSP-----NATEKDIHEFFSHCGDPVHVEIIRSG----ECGGTAYVTFSNAYALETA-VLLSGATIVDQPV   73 (242)
Q Consensus         4 ~~~tV~VsNLs~-----~~TE~dLrefFs~~G~I~~V~l~~~~----~~~~~AfV~F~~~~aA~tA-l~Lng~~l~g~~I   73 (242)
                      ..++|+|.||..     .-++++|++.|+.||+|.+|.|.++.    ...+++||+|.++++|..| ..|||..++|+.|
T Consensus         7 ~s~~l~l~Nm~~~~~l~dd~~~dl~~~f~~~G~V~~v~i~~~~~~~~~~~G~~FV~f~~~~~A~~Ai~~lnG~~~~Gr~i   86 (105)
T 2pe8_A            7 PTKVVLLRNMVGAGEVDEDLEVETKEECEKYGKVGKCVIFEIPGAPDDEAVRIFLEFERVESAIKAVVDLNGRYFGGRVV   86 (105)
T ss_dssp             CCSEEEEESSSCSCCC---CHHHHHHHGGGGSCEEEEEEEECSSCCTTTSEEEEEEESSHHHHHHHHHHHTTCEETTEEC
T ss_pred             CCCEEEEEcCCChHHhhHHHHHHHHHHHHhcCCEEEEEEecCCCCCCCCcEEEEEEECCHHHHHHHHHHHCCCEECCcEE
Confidence            347999999963     34799999999999999999999763    2357999999999999999 5899999999999


Q ss_pred             EEEecC
Q 026156           74 CIIRWG   79 (242)
Q Consensus        74 ~V~~a~   79 (242)
                      .|..+.
T Consensus        87 ~v~~a~   92 (105)
T 2pe8_A           87 KACFYN   92 (105)
T ss_dssp             EEEECC
T ss_pred             EEEEcC
Confidence            999764

>3u1l_A PRE-mRNA-splicing factor CWC2; CSMP, zinc finger; 1.64A {Saccharomyces cerevisiae} PDB: 3u1m_A 3tp2_A

Probab=99.32  E-value=2.6e-12  Score=113.19  Aligned_cols=75  Identities=21%  Similarity=0.188  Sum_probs=66.9

Q ss_pred             CCcEEEEeCCCCCC---------CHHHHHHHhccCCCceEEEEeecCCcCceEEEEecCHHHHHHH-HhcCCCee-----
Q 026156            4 GGYVAEVVGLSPNA---------TEKDIHEFFSHCGDPVHVEIIRSGECGGTAYVTFSNAYALETA-VLLSGATI-----   68 (242)
Q Consensus         4 ~~~tV~VsNLs~~~---------TE~dLrefFs~~G~I~~V~l~~~~~~~~~AfV~F~~~~aA~tA-l~Lng~~l-----   68 (242)
                      ..++|||+||++.+         +|++|+++|+.||+|++|.++.+   .++|||+|.+.++|+.| ..|+|..|     
T Consensus       133 ~~rtLfVgnL~~~~~~~~~~~~~tEe~L~~~F~~fG~I~~v~v~~~---kG~AFV~F~~~~~Ae~A~~am~g~~l~~~~~  209 (240)
T 3u1l_A          133 KNKTLYVGGIDGALNSKHLKPAQIESRIRFVFSRLGDIDRIRYVES---KNCGFVKFKYQANAEFAKEAMSNQTLLLPSD  209 (240)
T ss_dssp             CCCEEEEECTTGGGTTCCCCHHHHHHHHHHHHHTTSCEEEEEEEGG---GTEEEEEESSHHHHHHHHHHHTTCCCCCTTS
T ss_pred             CCceeecCCCChhhhcccccccCcHHHHHHHHHccCCEEEEEEECC---CCEEEEEeCCHHHHHHHHHHhCCCEEecccc
Confidence            45899999999998         79999999999999999999864   47999999999999999 58999999     


Q ss_pred             -------cCeeEEEEecCCC
Q 026156           69 -------VDQPVCIIRWGEY   81 (242)
Q Consensus        69 -------~g~~I~V~~a~~~   81 (242)
                             .|+.|.|.-+.+.
T Consensus       210 ~e~~~~~~gr~L~V~wA~~~  229 (240)
T 3u1l_A          210 KEWDDRREGTGLLVKWANED  229 (240)
T ss_dssp             TTGGGGGGSCCCEEEECC--
T ss_pred             ccccccCCCCEEEEEEccCC
Confidence                   8999999876543

>1qm9_A Polypyrimidine tract-binding protein; ribonucleoprotein, RNP, RNA, spicing, translation; NMR {Homo sapiens} SCOP: d.58.7.1 d.58.7.1

Probab=99.31  E-value=4.9e-12  Score=104.77  Aligned_cols=73  Identities=12%  Similarity=0.160  Sum_probs=66.7

Q ss_pred             CcEEEEeCCCCCCCHHHHHHHhccCC-CceEEEEeecCCcCceEEEEecCHHHHHHHH-hcCCCeec-CeeEEEEecC
Q 026156            5 GYVAEVVGLSPNATEKDIHEFFSHCG-DPVHVEIIRSGECGGTAYVTFSNAYALETAV-LLSGATIV-DQPVCIIRWG   79 (242)
Q Consensus         5 ~~tV~VsNLs~~~TE~dLrefFs~~G-~I~~V~l~~~~~~~~~AfV~F~~~~aA~tAl-~Lng~~l~-g~~I~V~~a~   79 (242)
                      .++|||+|||+.+++++|+++|+.|| .|.+|.+..++  .++|||+|.++++|..|+ .|||..|+ |+.|.|..+.
T Consensus       120 ~~~l~v~nl~~~~~~~~l~~~f~~~G~~v~~v~i~~~~--~g~afV~f~~~~~A~~A~~~l~g~~~~~g~~l~v~~a~  195 (198)
T 1qm9_A          120 SATLHLSNIPPSVSEEDLKVLFSSNGGVVKGFKFFQKD--RKMALIQMGSVEEAVQALIDLHNHDLGENHHLRVSFSK  195 (198)
T ss_dssp             CCEEEECCCCTTCCHHHHHHHHHHTTSCCCEEEESSTT--SSCEEEECSSHHHHHHHHHHHTSSCCSSCCSCCEEEEC
T ss_pred             ccEEEEeCCCCCCCHHHHHHHHHHcCCCceEEEEEeCC--CcEEEEEeCCHHHHHHHHHHhcCCccCCCCeEEEEeec
Confidence            57899999999999999999999999 99999997643  479999999999999995 69999999 9999998764

>3smz_A Protein raver-1, ribonucleoprotein PTB-binding 1; RNA binding, RNA recognition motif, vincu alpha-actinin, nucleus, RNA binding protein; 1.99A {Homo sapiens} PDB: 3vf0_B* 3h2u_B 3h2v_E

Probab=99.30  E-value=1.1e-11  Score=108.41  Aligned_cols=75  Identities=15%  Similarity=0.130  Sum_probs=67.4

Q ss_pred             CcEEEEeCCCCCC-CHHHHHHHhccCCCceEEEEeecCC--cCceEEEEecCHHHHHHHH-hcCCCeecCeeEEEEecC
Q 026156            5 GYVAEVVGLSPNA-TEKDIHEFFSHCGDPVHVEIIRSGE--CGGTAYVTFSNAYALETAV-LLSGATIVDQPVCIIRWG   79 (242)
Q Consensus         5 ~~tV~VsNLs~~~-TE~dLrefFs~~G~I~~V~l~~~~~--~~~~AfV~F~~~~aA~tAl-~Lng~~l~g~~I~V~~a~   79 (242)
                      .++|||+|||+.+ ++++|+++|+.||.|.+|.+..+..  ..++|||+|.++++|..|+ .|||..|+|++|.|..+.
T Consensus       184 ~~~l~v~nlp~~~~~~~~l~~~f~~~G~i~~v~i~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a~  262 (284)
T 3smz_A          184 SRCLCVDRLPPGFNDVDALCRALSAVHSPTFCQLACGQDGQLKGFAVLEYETAEMAEEAQQQADGLSLGGSHLRVSFCA  262 (284)
T ss_dssp             CSEEEEECCCTTCCCHHHHHHHTCSSSCCSEEEEEECSSCCEEEEEEEECSSHHHHHHHHHHHTTCEETTEECEEEECC
T ss_pred             ccEEEEecCCcccCCHHHHHHHhhCCCCeEEEEEEECCCCCcccEEEEEeCCHHHHHHHHHHhCCCccCCeEEEEEEec
Confidence            4799999999995 9999999999999999999987632  3479999999999999995 699999999999999763

>2adc_A Polypyrimidine tract-binding protein 1; RBD, RRM, protein-RNA complex, RNA binding protein/RNA complex; NMR {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 2evz_A

Probab=99.27  E-value=1.6e-11  Score=105.03  Aligned_cols=73  Identities=12%  Similarity=0.160  Sum_probs=66.4

Q ss_pred             CcEEEEeCCCCCCCHHHHHHHhccCC-CceEEEEeecCCcCceEEEEecCHHHHHHHH-hcCCCeec-CeeEEEEecC
Q 026156            5 GYVAEVVGLSPNATEKDIHEFFSHCG-DPVHVEIIRSGECGGTAYVTFSNAYALETAV-LLSGATIV-DQPVCIIRWG   79 (242)
Q Consensus         5 ~~tV~VsNLs~~~TE~dLrefFs~~G-~I~~V~l~~~~~~~~~AfV~F~~~~aA~tAl-~Lng~~l~-g~~I~V~~a~   79 (242)
                      .++|||+|||+.+++++|+++|+.|| .|.+|.+...+  .++|||+|.+.++|..|+ .|||..|+ |+.|.|..+.
T Consensus       151 ~~~l~V~nlp~~~t~~~l~~~f~~~G~~i~~v~i~~~~--~g~afV~f~~~~~A~~Ai~~l~g~~~~~g~~l~v~~a~  226 (229)
T 2adc_A          151 SATLHLSNIPPSVSEEDLKVLFSSNGGVVKGFKFFQKD--RKMALIQMGSVEEAVQALIDLHNHDLGENHHLRVSFSK  226 (229)
T ss_dssp             CSEEEEECCCTTCCHHHHHHHHHTTSCCEEEEEECSSS--TTCEEEEESSHHHHHHHHHHHTTCBSSSSCBCEEEECS
T ss_pred             CCEEEEeCCCccCCHHHHHHHHHHcCCCeeEEEEEECC--CcEEEEEECCHHHHHHHHHHHCCCccCCCCeEEEEEec
Confidence            57999999999999999999999999 99999997532  469999999999999995 69999999 9999998764

>3tyt_A Heterogeneous nuclear ribonucleoprotein L; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG; 1.60A {Mus musculus} PDB: 3s01_A 3to8_A

Probab=99.24  E-value=1.2e-11  Score=105.32  Aligned_cols=67  Identities=10%  Similarity=0.144  Sum_probs=60.7

Q ss_pred             CcEEEEeCCCCCCCHHHHHHHhccCCCc--eEEEEeecCC-cCceEEEEecCHHHHHHH-HhcCCCeecCe
Q 026156            5 GYVAEVVGLSPNATEKDIHEFFSHCGDP--VHVEIIRSGE-CGGTAYVTFSNAYALETA-VLLSGATIVDQ   71 (242)
Q Consensus         5 ~~tV~VsNLs~~~TE~dLrefFs~~G~I--~~V~l~~~~~-~~~~AfV~F~~~~aA~tA-l~Lng~~l~g~   71 (242)
                      .++|||+|||+.+|+++|+++|+.||.|  .+|++..+.+ .+++|||+|.+.++|..| ..|||..|.|.
T Consensus       123 ~~~l~v~NLp~~~t~~~L~~~F~~~G~v~~~~v~~~~~~~~~~g~gfV~f~~~~~A~~Ai~~lng~~~~g~  193 (205)
T 3tyt_A          123 SNVLHFFNAPLEVTEENFFEICDELGVKRPTSVKVFSGKSERSSSGLLEWDSKSDALETLGFLNHYQMKNP  193 (205)
T ss_dssp             CSEEEEEEECTTCCHHHHHHHHHHHTCCCCSEEEECSCCSSSSEEEEEECSSHHHHHHHHHHHTTCEECCS
T ss_pred             cceEEEeCCCCCCCHHHHHHHHHhcCCcceEEEEEEcCCCCCceEEEEEeCCHHHHHHHHHHhCCCCccCC
Confidence            3689999999999999999999999999  8999987643 347999999999999999 58999999886

>3sde_A Paraspeckle component 1; RRM, anti parallel right handed coiled-coil, NOPS, DBHS, RNA protein, RNA binding; 1.90A {Homo sapiens} PDB: 3sde_B

Probab=99.18  E-value=5.2e-11  Score=103.84  Aligned_cols=78  Identities=21%  Similarity=0.328  Sum_probs=66.8

Q ss_pred             CCcEEEEeCCCCCCCHHHHHHHhccCCCceEEEEeecCC--cCceEEEEecCHHHHHHH-Hhc-CCCeec---CeeEEEE
Q 026156            4 GGYVAEVVGLSPNATEKDIHEFFSHCGDPVHVEIIRSGE--CGGTAYVTFSNAYALETA-VLL-SGATIV---DQPVCII   76 (242)
Q Consensus         4 ~~~tV~VsNLs~~~TE~dLrefFs~~G~I~~V~l~~~~~--~~~~AfV~F~~~~aA~tA-l~L-ng~~l~---g~~I~V~   76 (242)
                      ..++|||+|||+.+|+++|+++|+.||.|.+|.++.+..  ..++|||+|.+.++|..| ..| +|..+.   +++|.|.
T Consensus        95 ~~~~l~v~nl~~~~t~~~l~~~F~~~G~i~~v~i~~~~~g~~~g~afV~f~~~~~A~~A~~~l~~~~~~~~~~~r~i~v~  174 (261)
T 3sde_A           95 HGAALTVKNLSPVVSNELLEQAFSQFGPVEKAVVVVDDRGRATGKGFVEFAAKPPARKALERCGDGAFLLTTTPRPVIVE  174 (261)
T ss_dssp             CSSEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEEETTSCEEEEEEEEESSHHHHHHHHHHHHHSCEESSSSCCBCEEE
T ss_pred             cCCcccccCCCCCCCHHHHHHHHHhcCCeEEEEeeeCCCCCcCcEEEEEeCCHHHHHHHHHHhcCCeEEecCCCceEEEe
Confidence            347999999999999999999999999999999997732  247999999999999999 467 555555   9999999


Q ss_pred             ecCCC
Q 026156           77 RWGEY   81 (242)
Q Consensus        77 ~a~~~   81 (242)
                      ++...
T Consensus       175 ~~~~~  179 (261)
T 3sde_A          175 PMEQF  179 (261)
T ss_dssp             ECCCE
T ss_pred             ecccc
Confidence            87654

>1jmt_A Splicing factor U2AF 35 kDa subunit; RRM, RNA splicing, proline, PPII helix, peptide recognition, RNA binding protein; 2.20A {Homo sapiens} SCOP: d.58.7.3

Probab=99.14  E-value=1.1e-11  Score=95.17  Aligned_cols=69  Identities=19%  Similarity=0.275  Sum_probs=56.7

Q ss_pred             EeCCCCCCCHHHHHHHh------------ccCCCceEEEEeecCC--cCceEEEEecCHHHHHHH-HhcCCCeecCeeEE
Q 026156           10 VVGLSPNATEKDIHEFF------------SHCGDPVHVEIIRSGE--CGGTAYVTFSNAYALETA-VLLSGATIVDQPVC   74 (242)
Q Consensus        10 VsNLs~~~TE~dLrefF------------s~~G~I~~V~l~~~~~--~~~~AfV~F~~~~aA~tA-l~Lng~~l~g~~I~   74 (242)
                      +.||++.+++++|+++|            +.||+|.+|.|.++..  ..++|||+|.++++|..| ..|||..++|+.|.
T Consensus        20 ~~~l~~~~~~~~l~~~f~~~~edl~~~f~~~~G~V~~v~i~~~~~~~~~G~~fV~f~~~~~A~~A~~~lng~~~~Gr~i~   99 (104)
T 1jmt_A           20 ADGLRSAVSDVEMQEHYDEFFEEVFTEMEEKYGEVEEMNVCDNLGDHLVGNVYVKFRREEDAEKAVIDLNNRWFNGQPIH   99 (104)
T ss_dssp             -CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCCEEEEEECCSSSSSSEEEEEEEESCHHHHHHHHHHHTTCEETTEECC
T ss_pred             cCCcccccCHHHHHHHHHHHHHHHHHHhhccCCceEEEEEEeCCCCCccEEEEEEECCHHHHHHHHHHHCCCEECCEEEE
Confidence            44555566777777666            9999999999997643  347999999999999999 57999999999999


Q ss_pred             EEec
Q 026156           75 IIRW   78 (242)
Q Consensus        75 V~~a   78 (242)
                      |..+
T Consensus       100 v~~s  103 (104)
T 1jmt_A          100 AELS  103 (104)
T ss_dssp             EEEC
T ss_pred             EEEc
Confidence            9754

>2d9o_A DNAJ (HSP40) homolog, subfamily C, member 17; RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.12  E-value=6.5e-10  Score=85.19  Aligned_cols=73  Identities=19%  Similarity=0.177  Sum_probs=59.1

Q ss_pred             CcEEEEeCCC-------CCCCHHHHHHHhccCCCceEEEEeecCCcCceEEEEecCHHHHHHHHhcCCCeecCeeEEEEe
Q 026156            5 GYVAEVVGLS-------PNATEKDIHEFFSHCGDPVHVEIIRSGECGGTAYVTFSNAYALETAVLLSGATIVDQPVCIIR   77 (242)
Q Consensus         5 ~~tV~VsNLs-------~~~TE~dLrefFs~~G~I~~V~l~~~~~~~~~AfV~F~~~~aA~tAl~Lng~~l~g~~I~V~~   77 (242)
                      .+.|.|.-..       +.+++++|+++|+.||+|.+|.|+.  ...+||||+|.++++|+.|+.. +..+.|++|.|..
T Consensus        10 ~~~~~v~w~~~~~~~~~~~~te~~L~~~F~~~G~V~~v~i~~--~~rGfaFVeF~~~~~A~~Ai~~-~~~~~g~~l~V~~   86 (100)
T 2d9o_A           10 TPKLKLKWKCKKEDESKGGYSKDVLLRLLQKYGEVLNLVLSS--KKPGTAVVEFATVKAAELAVQN-EVGLVDNPLKISW   86 (100)
T ss_dssp             SCEEEEECCCCSSCSCCCSCCHHHHHHHHHTTSCEEEEEEES--SSSSEEEEEESCHHHHHHHHHT-CCBCSSSBCEEEC
T ss_pred             cceEEEeeeccCccCcCCCCCHHHHHHHHHhcCCEEEEEEcc--CCCCEEEEEECCHHHHHHHHHh-cCCCCCCeEEEEE
Confidence            3567776554       5689999999999999999999983  3457999999999999999643 4447899999986


Q ss_pred             cCC
Q 026156           78 WGE   80 (242)
Q Consensus        78 a~~   80 (242)
                      +.+
T Consensus        87 a~~   89 (100)
T 2d9o_A           87 LEG   89 (100)
T ss_dssp             SSC
T ss_pred             ccC
Confidence            543

>3v4m_A Splicing factor U2AF 65 kDa subunit; canonical RNA binding protein, RNA splicing, structural GENO joint center for structural genomics, JCSG; HET: MSE; 1.80A {Mus musculus} PDB: 1o0p_A 1opi_A

Probab=99.11  E-value=1.6e-10  Score=88.87  Aligned_cols=74  Identities=19%  Similarity=0.235  Sum_probs=63.1

Q ss_pred             cEEEEeCCCC--CCC--------HHHHHHHhccCCCceEEEEeecCC-----cCceEEEEecCHHHHHHH-HhcCCCeec
Q 026156            6 YVAEVVGLSP--NAT--------EKDIHEFFSHCGDPVHVEIIRSGE-----CGGTAYVTFSNAYALETA-VLLSGATIV   69 (242)
Q Consensus         6 ~tV~VsNLs~--~~T--------E~dLrefFs~~G~I~~V~l~~~~~-----~~~~AfV~F~~~~aA~tA-l~Lng~~l~   69 (242)
                      +.|.+.|+-.  ...        +++|++.|+.||+|.+|.|.++..     ..+++||+|.++++|..| ..|||..++
T Consensus         6 ~vl~L~Nm~~~~~l~~d~~~~~~~~dl~~~f~k~G~V~~v~i~~~~~~~~~~~~G~~fV~f~~~~~A~~Ai~~lnG~~f~   85 (105)
T 3v4m_A            6 EVLCLMNMVLPEELLDDEEYEEIVEDVRDECSKYGLVKSIEIPRPVDGVEVPGCGKIFVEFTSVFDCQKAMQGLTGRKFA   85 (105)
T ss_dssp             SEEEEESSCCGGGSSSHHHHHHHHHHHHHHHHTTSCEEEEECCCCBTTBCCTTTTEEEEEESSHHHHHHHHHHHTTCEET
T ss_pred             eEEEEECCCCHHHccChHHHHHHHHHHHHHHHccCCEEEEEEeccCCCCCcCCcEEEEEEECCHHHHHHHHHHhCCCEeC
Confidence            6899999832  332        479999999999999999987642     347999999999999999 699999999


Q ss_pred             CeeEEEEecC
Q 026156           70 DQPVCIIRWG   79 (242)
Q Consensus        70 g~~I~V~~a~   79 (242)
                      |+.|.|..+.
T Consensus        86 GR~i~v~~~~   95 (105)
T 3v4m_A           86 NRVVVTKYCD   95 (105)
T ss_dssp             TEECEEEEEC
T ss_pred             CCEEEEEEeC
Confidence            9999998763

>3ue2_A Poly(U)-binding-splicing factor PUF60; RNA recognition motif, RRM, RNA binding domain, ST genomics, joint center for structural genomics, JCSG; HET: MSE; 1.23A {Homo sapiens} SCOP: d.58.7.0 PDB: 3us5_A 2dny_A

Probab=99.05  E-value=5.9e-10  Score=87.78  Aligned_cols=75  Identities=19%  Similarity=0.152  Sum_probs=63.9

Q ss_pred             CcEEEEeCCCC-----CCCHHHHHHHhccCCCceEEEEeecCC-------cCceEEEEecCHHHHHHH-HhcCCCeecCe
Q 026156            5 GYVAEVVGLSP-----NATEKDIHEFFSHCGDPVHVEIIRSGE-------CGGTAYVTFSNAYALETA-VLLSGATIVDQ   71 (242)
Q Consensus         5 ~~tV~VsNLs~-----~~TE~dLrefFs~~G~I~~V~l~~~~~-------~~~~AfV~F~~~~aA~tA-l~Lng~~l~g~   71 (242)
                      .++|++.|+-.     .--++||++.|+.||+|.+|.|.++..       ..+++||+|.++++|..| ..|||..++|+
T Consensus        20 s~vl~L~Nm~~~~el~ddleedl~eef~k~G~V~~v~I~~~~~~~~~~~~~~G~~FV~F~~~e~A~~Ai~~LnGr~f~GR   99 (118)
T 3ue2_A           20 STVMVLRNMVDPKDIDDDLEGEVTEECGKFGAVNRVIIYQEKQGEEEDAEIIVKIFVEFSIASETHKAIQALNGRWFAGR   99 (118)
T ss_dssp             CCEEEEESCSCGGGCCTTHHHHHHHHHTTTSCEEEEEEEEEEESSSTTCEEEEEEEEEESSHHHHHHHHHHHTTCEETTE
T ss_pred             CCEEEEECCCCHHHHHHHHHHHHHHHHhccCCEeEEEEeecCCCcccCCcceEEEEEEECCHHHHHHHHHHHCCCEECCc
Confidence            37899999942     124799999999999999999997632       126999999999999999 69999999999


Q ss_pred             eEEEEecC
Q 026156           72 PVCIIRWG   79 (242)
Q Consensus        72 ~I~V~~a~   79 (242)
                      .|.|..+.
T Consensus       100 ~i~v~~~~  107 (118)
T 3ue2_A          100 KVVAEVYD  107 (118)
T ss_dssp             ECEEEEEC
T ss_pred             EEEEEEcC
Confidence            99999763

>1owx_A Lupus LA protein, SS-B, LA; RRM, transcription; NMR {Homo sapiens} SCOP: d.58.7.1

Probab=99.04  E-value=6.6e-10  Score=88.47  Aligned_cols=73  Identities=15%  Similarity=0.209  Sum_probs=63.0

Q ss_pred             CCCcEEEEeCCCCC-CCHHHHHHHhccCCCceEEEEeecCCcCceEEEEecC-HHHHHHH-Hhc--CCCeecCeeEEEEe
Q 026156            3 AGGYVAEVVGLSPN-ATEKDIHEFFSHCGDPVHVEIIRSGECGGTAYVTFSN-AYALETA-VLL--SGATIVDQPVCIIR   77 (242)
Q Consensus         3 ~~~~tV~VsNLs~~-~TE~dLrefFs~~G~I~~V~l~~~~~~~~~AfV~F~~-~~aA~tA-l~L--ng~~l~g~~I~V~~   77 (242)
                      +.++.|+|+||++. +++++|+++|+.||+|.+|.+.++..   +|||.|.+ +.+|..| ..|  +|.+|.|..+++..
T Consensus        16 ~~G~il~v~~l~~~~~sredLke~F~~~G~V~~Vd~~~g~~---tgfVrf~~~~~~A~~av~~ln~~~~~i~g~~~~~ev   92 (121)
T 1owx_A           16 KIGCLLKFSGDLDDQTCREDLHILFSNHGEIKWIDFVRGAK---EGIILFKEKAKEALGKAKDANNGNLQLRNKEVTWEV   92 (121)
T ss_dssp             CCCCEEEEEESCCSSCCHHHHHHHTCSSCCEEEEECCTTCS---EEEEEESSCHHHHHHHHHHTTTSCBCTTSSSEEEEE
T ss_pred             cCCeEEEEecCCCCcCCHHHHHHHHHhcCCEEEEEEecCCC---EEEEEECCChHHHHHHHHHhhcCCcEEeCcEEEEEE
Confidence            45689999999999 99999999999999999999987654   79999999 6788877 566  47789998888875


Q ss_pred             c
Q 026156           78 W   78 (242)
Q Consensus        78 a   78 (242)
                      .
T Consensus        93 L   93 (121)
T 1owx_A           93 L   93 (121)
T ss_dssp             C
T ss_pred             C
Confidence            4

>3tht_A Alkylated DNA repair protein ALKB homolog 8; structural genomics, PSI-biology, northeast structural genom consortium, NESG; HET: AKG; 3.01A {Homo sapiens} PDB: 3thp_A*

Probab=98.97  E-value=9e-10  Score=101.63  Aligned_cols=71  Identities=14%  Similarity=0.175  Sum_probs=60.2

Q ss_pred             CcEEEEeC--CCCCCCHHHHHHHhccCCCceEEEEeecCCcCceEEEEecCHHHHHHH-HhcCCCeec---Ce--eEEEE
Q 026156            5 GYVAEVVG--LSPNATEKDIHEFFSHCGDPVHVEIIRSGECGGTAYVTFSNAYALETA-VLLSGATIV---DQ--PVCII   76 (242)
Q Consensus         5 ~~tV~VsN--Ls~~~TE~dLrefFs~~G~I~~V~l~~~~~~~~~AfV~F~~~~aA~tA-l~Lng~~l~---g~--~I~V~   76 (242)
                      ..+|||+|  |++.+||++|+++|+.||+|.+|.+..   .++||||+|.+.++|+.| ..|||..+.   |+  .+.|.
T Consensus        18 s~~l~VgN~gl~~~~te~~L~~~F~~~G~V~~v~~~~---~kgfaFV~f~~~~~A~~Ai~~lnG~~~~~~~g~~~~ly~~   94 (345)
T 3tht_A           18 TQSLVVANGGLGNGVSRNQLLPVLEKCGLVDALLMPP---NKPYSFARYRTTEESKRAYVTLNGKEVVDDLGQKITLYLN   94 (345)
T ss_dssp             CSEEEEETCSGGGTCCHHHHHHHHHTTSCEEEEECCT---TCSEEEEEESSHHHHHHHHHHTTTCEEECTTSCEEECEEE
T ss_pred             CCEEEEEcCCCCCCCCHHHHHHHHHhcCCeEEEEEeC---CCCEEEEEECCHHHHHHHHHHhCCCccccccCCceEEEEE
Confidence            36999999  588999999999999999999998865   247999999999999999 689999984   34  45555


Q ss_pred             ec
Q 026156           77 RW   78 (242)
Q Consensus        77 ~a   78 (242)
                      ..
T Consensus        95 ~~   96 (345)
T 3tht_A           95 FV   96 (345)
T ss_dssp             EC
T ss_pred             Ee
Confidence            44

>2dnr_A Synaptojanin-1; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=98.96  E-value=2.8e-09  Score=80.89  Aligned_cols=74  Identities=16%  Similarity=0.244  Sum_probs=63.3

Q ss_pred             CCCCCcEEEEeCCCC----CCCH----HHHHHHhccCCCceEEEEeecCCcCceEEEEecCHHHHHHHHhcCCCeecCee
Q 026156            1 MYAGGYVAEVVGLSP----NATE----KDIHEFFSHCGDPVHVEIIRSGECGGTAYVTFSNAYALETAVLLSGATIVDQP   72 (242)
Q Consensus         1 M~~~~~tV~VsNLs~----~~TE----~dLrefFs~~G~I~~V~l~~~~~~~~~AfV~F~~~~aA~tAl~Lng~~l~g~~   72 (242)
                      |-|-+.||.|.-.+.    +.-+    .+|.+.|+.||+|..+++..+.     +||+|.+.++|..|+.|||..++|+.
T Consensus         3 ~GPpd~tv~V~~~~~~~~~~~fd~~l~~~L~~~F~~~G~Vi~vr~~~d~-----~fVtF~d~~sAlaAi~mnG~~v~Gr~   77 (91)
T 2dnr_A            3 SGSSGGTVLVSIKSSLPENNFFDDALIDELLQQFASFGEVILIRFVEDK-----MWVTFLEGSSALNVLSLNGKELLNRT   77 (91)
T ss_dssp             CCCSSCEEEEEEECSSTTTCSCCHHHHHHHHHHHHTTCCEEEEEECSSS-----EEEEESSHHHHHHGGGGTTCEETTEE
T ss_pred             CCCCCCeEEEEeccCccccccCCHHHHHHHHHHHHhCCCeEEEEEecCC-----EEEEECChHHHHHHHhcCCeEeCCeE
Confidence            345568999998773    4444    6788999999999999999753     89999999999999889999999999


Q ss_pred             EEEEecC
Q 026156           73 VCIIRWG   79 (242)
Q Consensus        73 I~V~~a~   79 (242)
                      |+|....
T Consensus        78 LkV~lkt   84 (91)
T 2dnr_A           78 ITIALKS   84 (91)
T ss_dssp             EEEEECC
T ss_pred             EEEEeCC
Confidence            9999765

>3s6e_A RNA-binding protein 39; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG, protein structure initiative, PSI-biology; HET: MSE CIT; 0.95A {Mus musculus} PDB: 2lq5_A

Probab=98.95  E-value=3.4e-09  Score=82.97  Aligned_cols=73  Identities=15%  Similarity=0.165  Sum_probs=61.8

Q ss_pred             cEEEEeCCCCCC----------CHHHHHHHhccCCCceEEEEeecCCcCceEEEEecCHHHHHHH-HhcCCCeecCeeEE
Q 026156            6 YVAEVVGLSPNA----------TEKDIHEFFSHCGDPVHVEIIRSGECGGTAYVTFSNAYALETA-VLLSGATIVDQPVC   74 (242)
Q Consensus         6 ~tV~VsNLs~~~----------TE~dLrefFs~~G~I~~V~l~~~~~~~~~AfV~F~~~~aA~tA-l~Lng~~l~g~~I~   74 (242)
                      ++|.+.|+=..-          -++||++.|+.||.|.+|.+.++. ..+++||+|.++++|..| ..|||..++|+.|.
T Consensus         8 ~vv~L~Nm~~~~e~~d~~~~~el~edl~~~f~kfG~V~~v~i~~~~-~~G~~fV~f~~~e~A~~Ai~~lnG~~f~GR~i~   86 (114)
T 3s6e_A            8 QCFQLSNMFNPQTEEEVGWDTEIKDDVIEECNKHGGVIHIYVDKNS-AQGNVYVKCPSIAAAIAAVNALHGRWFAGKMIT   86 (114)
T ss_dssp             SEEEEESSCCTTTCCSTTHHHHHHHHHHHHHTTTTCCSEEEECTTC-TTCCEEEECSSHHHHHHHHHHHTTCEETTEECE
T ss_pred             cEEEEECCCChHHccChhHHHHHHHHHHHHHhccCCEEEEEEecCC-CcEEEEEEECCHHHHHHHHHHhCCCEECCEEEE
Confidence            678999984322          245889999999999999997654 357999999999999999 68999999999999


Q ss_pred             EEecC
Q 026156           75 IIRWG   79 (242)
Q Consensus        75 V~~a~   79 (242)
                      |..+.
T Consensus        87 v~~~~   91 (114)
T 3s6e_A           87 AAYVP   91 (114)
T ss_dssp             EEEEC
T ss_pred             EEEEc
Confidence            98763

>1ufw_A Synaptojanin 2; RNP domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1

Probab=98.74  E-value=1.9e-08  Score=76.86  Aligned_cols=73  Identities=18%  Similarity=0.121  Sum_probs=62.0

Q ss_pred             CCCCCcEEEEeCCCCC-----CCH----HHHHHHhccCCCceEEEEeecCCcCceEEEEecCHHHHHHHHhcCCCeecCe
Q 026156            1 MYAGGYVAEVVGLSPN-----ATE----KDIHEFFSHCGDPVHVEIIRSGECGGTAYVTFSNAYALETAVLLSGATIVDQ   71 (242)
Q Consensus         1 M~~~~~tV~VsNLs~~-----~TE----~dLrefFs~~G~I~~V~l~~~~~~~~~AfV~F~~~~aA~tAl~Lng~~l~g~   71 (242)
                      |-|-+.||.|.-+++.     .-+    .+|.+.|+.||.|..+++..+.     +||+|.+.++|..|+.|||..++|+
T Consensus        11 ~GPpD~Tv~V~~~~~~~~~~~~fd~~l~~~L~~~F~~~G~Vilvr~v~d~-----~fVtF~d~~sAl~AI~ldG~~v~Gr   85 (95)
T 1ufw_A           11 QGPLDATVVVNLQSPTLEEKNEFPEDLRTELMQTLGSYGTIVLVRINQGQ-----MLVTFADSHSALSVLDVDGMKVKGR   85 (95)
T ss_dssp             CCCTTCEEEEEESSCCHHHHHSCCHHHHHHHHHHHHHHSCCSEEEEETTE-----EEEECSCSHHHHHHHHGGGSEETTE
T ss_pred             cCCCCCeEEEEecCCcccccccCCHHHHHHHHHHHHHCCCEEEEEEecCc-----EEEEEcChHHHHHHHhcCCeeeCCe
Confidence            3455689999998753     323    5688999999999999999653     9999999999999988999999999


Q ss_pred             eEEEEec
Q 026156           72 PVCIIRW   78 (242)
Q Consensus        72 ~I~V~~a   78 (242)
                      .|+|..-
T Consensus        86 ~L~V~~k   92 (95)
T 1ufw_A           86 AVKISGP   92 (95)
T ss_dssp             EEEEECC
T ss_pred             EEEEecc
Confidence            9999853

>3dxb_A Thioredoxin N-terminally fused to PUF60(UHM); splicing, FBP interacting repressor, RRM, electron TRAN redox-active center, transport; 2.20A {Escherichia coli O157}

Probab=98.27  E-value=1.5e-06  Score=73.56  Aligned_cols=63  Identities=21%  Similarity=0.166  Sum_probs=54.8

Q ss_pred             CCHHHHHHHhccCCCceEEEEeecCC-------cCceEEEEecCHHHHHHH-HhcCCCeecCeeEEEEecC
Q 026156           17 ATEKDIHEFFSHCGDPVHVEIIRSGE-------CGGTAYVTFSNAYALETA-VLLSGATIVDQPVCIIRWG   79 (242)
Q Consensus        17 ~TE~dLrefFs~~G~I~~V~l~~~~~-------~~~~AfV~F~~~~aA~tA-l~Lng~~l~g~~I~V~~a~   79 (242)
                      -.+++|++.|+.||+|.++.+.++..       ..+++||+|.+.++|.+| ..|||..++||.|.+..+.
T Consensus       141 e~~~dl~~e~~~~G~v~~~~v~~~~~~~~~~~~~~G~~fv~f~~~~~a~~a~~~l~gr~~~gr~i~~~~~~  211 (222)
T 3dxb_A          141 DLEGEVTEECGKFGAVNRVIIYQEKQGEEEDAEIIVKIFVEFSIASETHKAIQALNGRWFAGRKVVAEVYD  211 (222)
T ss_dssp             THHHHHHHHHTTTSCEEEEEEEEEECCSSTTCCEEEEEEEEESSHHHHHHHHHHHTTCBSSSSBCEEEECC
T ss_pred             HHHHHHHHHHHccCCeEEEEEecCCCCcccCcCceeEEEEEECCHHHHHHHHHHhcCceECCeEEEEEEcC
Confidence            45789999999999999999985422       236999999999999999 6999999999999998763

>2l9w_A U4/U6 snRNA-associated-splicing factor PRP24; RRM, U6 snRNP, RNA binding protein; NMR {Saccharomyces cerevisiae}

Probab=98.24  E-value=3.8e-06  Score=65.89  Aligned_cols=71  Identities=13%  Similarity=0.130  Sum_probs=65.7

Q ss_pred             CcEEEEeCCCCCCCHHHHHHHhccC-----CCceEEEEeecCCcCceEEEEecCHHHHHHH-HhcCCCeecCeeEEEEec
Q 026156            5 GYVAEVVGLSPNATEKDIHEFFSHC-----GDPVHVEIIRSGECGGTAYVTFSNAYALETA-VLLSGATIVDQPVCIIRW   78 (242)
Q Consensus         5 ~~tV~VsNLs~~~TE~dLrefFs~~-----G~I~~V~l~~~~~~~~~AfV~F~~~~aA~tA-l~Lng~~l~g~~I~V~~a   78 (242)
                      .++|-+=|||..+++..||.|...+     |.|..|.|..+-   +-|.|+|.|...|-+| |.|||.+|.|+.|++...
T Consensus        21 ~rtiaL~~ipDtvndarIr~lve~~~~i~~g~i~KI~L~pDH---~GAivef~d~~~AgKasLaL~G~ef~gr~Lr~gTv   97 (117)
T 2l9w_A           21 ETLICLFPLSDKVSPSLICQFLQEEIHINEKDIRKILLVSDF---NGAIIIFRDSKFAAKMLMILNGSQFQGKVIRSGTI   97 (117)
T ss_dssp             TSCEEEECCCTTCCHHHHHHHHHHHTCCCTTTCSEEEEETTT---TEEEEECSCHHHHHHHHHHHSSEEETTEEEEEECH
T ss_pred             CcEEEEecCCCCCCHHHHHHHHhhhhccCccceeEEEEecCC---CceEEEEccchhhHHHHhhcCCeeecCeEEEecCH
Confidence            5899999999999999999999999     999999999764   5799999999999999 899999999999999743

>2dhx_A Poly (ADP-ribose) polymerase family, member 10 variant; RRM domain, RNA- binding, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=98.11  E-value=2.5e-05  Score=60.38  Aligned_cols=73  Identities=16%  Similarity=0.258  Sum_probs=63.8

Q ss_pred             CCCcEEEEeCCCCCCCHHHHHHHhcc-----CCCceEEEEeecCCcCceEEEEecCHHHHHHHHhcCCCeecCeeEEEEe
Q 026156            3 AGGYVAEVVGLSPNATEKDIHEFFSH-----CGDPVHVEIIRSGECGGTAYVTFSNAYALETAVLLSGATIVDQPVCIIR   77 (242)
Q Consensus         3 ~~~~tV~VsNLs~~~TE~dLrefFs~-----~G~I~~V~l~~~~~~~~~AfV~F~~~~aA~tAl~Lng~~l~g~~I~V~~   77 (242)
                      +...+|.|.|||+.+.++.|+-||..     =|.|.+|+...     +.|+|+|.++..+++.|.-..+.|.+.+|.|.|
T Consensus         6 ~~~~~I~V~~lPp~~~~e~L~LYFEn~rrsGGG~V~~v~~~~-----~~AvItF~d~~va~rVL~k~~H~L~~~~LsV~P   80 (104)
T 2dhx_A            6 SGGVAVEVRGLPPAVPDELLTLYFENRRRSGGGPVLSWQRLG-----CGGVLTFREPADAERVLAQADHELHGAQLSLRP   80 (104)
T ss_dssp             CCCCEEEEESCCTTSCHHHHHHHHHCTTTTCCCCEEEEEEET-----TEEEEEESSHHHHHHHHTCSCCBSSSSBCEEEE
T ss_pred             cCccEEEEECCCCCCChhHheEEEeCCCcCCCceeeEEEEcC-----CcEEEEEcChHHHHHHhcCCcceecCeEEEEEc
Confidence            34579999999999999999999976     26899988863     589999999999999988888999999999998


Q ss_pred             cCC
Q 026156           78 WGE   80 (242)
Q Consensus        78 a~~   80 (242)
                      +.+
T Consensus        81 ~~~   83 (104)
T 2dhx_A           81 APP   83 (104)
T ss_dssp             CCC
T ss_pred             CCC
Confidence            744

>1wwh_A Nucleoporin 35, nucleoporin; structural genomics, MPPN, riken structural genomics/proteomics initiative, RSGI, protein transport; 2.70A {Mus musculus} SCOP: d.58.7.1

Probab=97.79  E-value=0.00014  Score=57.57  Aligned_cols=71  Identities=11%  Similarity=0.112  Sum_probs=60.2

Q ss_pred             CcEEEEeCCCCCCCHHHHHHHhccCCCceEEEEeecCCcCceEEEEecCHHHHHHHHhcCCCeecC-eeEEEEecC
Q 026156            5 GYVAEVVGLSPNATEKDIHEFFSHCGDPVHVEIIRSGECGGTAYVTFSNAYALETAVLLSGATIVD-QPVCIIRWG   79 (242)
Q Consensus         5 ~~tV~VsNLs~~~TE~dLrefFs~~G~I~~V~l~~~~~~~~~AfV~F~~~~aA~tAl~Lng~~l~g-~~I~V~~a~   79 (242)
                      .+.|.|-+.++.. -..|-++|+.||.|.+....   ....+-.|.|.++.+|++||..||..|+| .-|-|.++.
T Consensus        24 ~~wVtVFGFp~~~-~~~VL~~F~~~G~Iv~~~~~---~~~NWihI~Y~s~~~A~rAL~kNG~ii~g~~mIGV~p~~   95 (119)
T 1wwh_A           24 DTWVTVFGFPQAS-ASYILLQFAQYGNILKHVMS---NTGNWMHIRYQSKLQARKALSKDGRIFGESIMIGVKPCI   95 (119)
T ss_dssp             GGEEEEECCCGGG-HHHHHHHHHTTSCEEEEEEC---SSSSEEEEEESSHHHHHHHHTTTTCEETTTEECEEEECC
T ss_pred             CCEEEEECCCHHH-HHHHHHHHHhhCcEEEeccC---CCCCeEEEEeCCHHHHHHHHHhCCeEecCCEEEEEEECC
Confidence            4689999999985 66777889999999998872   22469999999999999999999999985 778888864

>1wey_A Calcipressin 1; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI, RNA binding protein; NMR {Mus musculus} SCOP: d.58.7.1

Probab=97.47  E-value=0.00094  Score=51.57  Aligned_cols=74  Identities=12%  Similarity=0.134  Sum_probs=63.0

Q ss_pred             CCCcEEEEeCCCCCC-CH----HHHHHHhccCCCceEEEEeecCCcCceEEEEecCHHHHHHH-HhcCCCeecCeeEEEE
Q 026156            3 AGGYVAEVVGLSPNA-TE----KDIHEFFSHCGDPVHVEIIRSGECGGTAYVTFSNAYALETA-VLLSGATIVDQPVCII   76 (242)
Q Consensus         3 ~~~~tV~VsNLs~~~-TE----~dLrefFs~~G~I~~V~l~~~~~~~~~AfV~F~~~~aA~tA-l~Lng~~l~g~~I~V~   76 (242)
                      ...++++|+||++.+ ..    +.+++.|..++++.+..+.+.   .+-.-|.|.++++|..| +.|++..+.|..++|-
T Consensus         3 ~~pntLiitnl~~~vF~~~~lk~~~e~Lf~~~~~~~tF~~lkS---FRRirv~F~~~~~A~~AR~~Lh~~~f~g~~~r~Y   79 (104)
T 1wey_A            3 SGSSGLIACVANDDVFSESETRAKFESLFRTYDKDTTFQYFKS---FKRVRINFSNPLSAADARLRLHKTEFLGKEMKLY   79 (104)
T ss_dssp             SCCCEEEEECCCGGGGSTTTHHHHHHHHHHTTCSSCEEEEETT---TTEEEEECSSTTHHHHHHHTSTTSEETTEECEEE
T ss_pred             CCCceEEEecCCHHHcCCHHHHHHHHHHHHhhCcCcceeecCc---ceEEEEEeCChHHHHHHHHHhccceecCceeEEE
Confidence            345799999998866 32    567899999999999888754   35789999999999999 8999999999999998


Q ss_pred             ecC
Q 026156           77 RWG   79 (242)
Q Consensus        77 ~a~   79 (242)
                      -+.
T Consensus        80 Fgq   82 (104)
T 1wey_A           80 FAQ   82 (104)
T ss_dssp             CCC
T ss_pred             ecC
Confidence            665

>3p3d_A Nucleoporin 53; structural genomics, PSI-2, protein structure initiative, NE structural genomix research consortium, nysgxrc; 2.35A {Pichia guilliermondii}

Probab=97.37  E-value=0.00017  Score=57.90  Aligned_cols=77  Identities=18%  Similarity=0.297  Sum_probs=57.6

Q ss_pred             CCCcEEEEeCCCCCCCHHHHHHHhccCCCceE-EEEeec--------------CC--cCceEEEEecCHHHHHHHHhcCC
Q 026156            3 AGGYVAEVVGLSPNATEKDIHEFFSHCGDPVH-VEIIRS--------------GE--CGGTAYVTFSNAYALETAVLLSG   65 (242)
Q Consensus         3 ~~~~tV~VsNLs~~~TE~dLrefFs~~G~I~~-V~l~~~--------------~~--~~~~AfV~F~~~~aA~tAl~Lng   65 (242)
                      .++..|.|=+.|+. ....+-+.|+.||.|.+ +...+.              +.  ...+-.|+|.++.+|.+||..||
T Consensus         5 ~~e~~VtVFGFp~~-~~~~VI~~Fs~~G~IlE~~~~~~~~~~~~~~~~~~k~yP~f~g~NWikItYds~~~A~rAL~~NG   83 (132)
T 3p3d_A            5 NGELAILVFGYPET-MANQVIAYFQEFGTILEDFEVLRKPQAMTVGLQDRQFVPIFSGNSWTKITYDNPASAVDALLENG   83 (132)
T ss_dssp             ---CEEEEECCCGG-GHHHHHHHHGGGSCBCSCCGGGCCC-----------CCCCCEETTEEEEEBSSHHHHHHHHTTTT
T ss_pred             cCceEEEEEecCHH-HHHHHHHHHHhhceEeeeccccccccccccccccccccCccCCCcEEEEEcCCHHHHHHHHHhCC
Confidence            34568999999665 45667778999999976 322210              00  13588999999999999999999


Q ss_pred             CeecCeeEEEEecCC
Q 026156           66 ATIVDQPVCIIRWGE   80 (242)
Q Consensus        66 ~~l~g~~I~V~~a~~   80 (242)
                      ..|+|.-|-|.|+.+
T Consensus        84 ~ii~G~mIGV~Py~~   98 (132)
T 3p3d_A           84 AVFNGVLLGVIPYTK   98 (132)
T ss_dssp             CEETTEECEEEECCH
T ss_pred             eEeCcEEEEEEECCH
Confidence            999999999998853

>1uw4_A UPF3X; nonsense mediated mRNA decay protein, RNA-binding protein, N domain, MIF4G domain; 1.95A {Homo sapiens} SCOP: d.58.7.4

Probab=96.85  E-value=0.0055  Score=46.02  Aligned_cols=66  Identities=17%  Similarity=0.225  Sum_probs=54.0

Q ss_pred             cEEEEeCCCCCCCHHHHHHHhccCCCceEEEEeecCC-----cCceEEEEecCHHHHHHH-HhcCCCeecCe
Q 026156            6 YVAEVVGLSPNATEKDIHEFFSHCGDPVHVEIIRSGE-----CGGTAYVTFSNAYALETA-VLLSGATIVDQ   71 (242)
Q Consensus         6 ~tV~VsNLs~~~TE~dLrefFs~~G~I~~V~l~~~~~-----~~~~AfV~F~~~~aA~tA-l~Lng~~l~g~   71 (242)
                      ..|-|.+|||..||+++.+.++...++........+-     ....|||.|.+++.+..- ..++|+.+.+.
T Consensus         2 ~KvVIRrLPP~LteeeF~~~l~~~~~~d~~~fv~G~~s~~~~~~SRaYi~f~~~e~v~~f~~~~~g~~F~D~   73 (91)
T 1uw4_A            2 SKVVIRRLPPTLTKEQLQEHLQPMPEHDYFEFFSNDTSLYPHMYARAYINFKNQEDIILFRDRFDGYVFLDN   73 (91)
T ss_dssp             CEEEEEEECTTCCHHHHHHHHCSCCCEEEEEEEESCCSSTTCCCEEEEEEESSSHHHHHHHHHHTTCEEECT
T ss_pred             cEEEEeCCCCCCCHHHHHHHhcCcccceEEEEeCCccCCCCCcceEEEEEeCCHHHHHHHHHHhCCcEEEcC
Confidence            4789999999999999999999998877777664332     124899999999888877 79999988654

>3pq1_A Poly(A) RNA polymerase; nucleotidyl transferase, RNP-type RNA binding domain, poly(A polymerase, mitochondria, transferase; 3.10A {Homo sapiens}

Probab=95.92  E-value=0.0042  Score=59.28  Aligned_cols=57  Identities=14%  Similarity=0.061  Sum_probs=43.2

Q ss_pred             CcEEEEeCCCCCCCHHHHHHHhccCCCceEEEEeecCCcCceEEEEecCHHHHHHHHhcC
Q 026156            5 GYVAEVVGLSPNATEKDIHEFFSHCGDPVHVEIIRSGECGGTAYVTFSNAYALETAVLLS   64 (242)
Q Consensus         5 ~~tV~VsNLs~~~TE~dLrefFs~~G~I~~V~l~~~~~~~~~AfV~F~~~~aA~tAl~Ln   64 (242)
                      .++|+|. .++.+++++|.++|+.||+|.++-+-.+.  +.||.|+|.+.+++..++...
T Consensus        53 ~rsv~v~-~~~~~~~~~l~~y~~~~g~i~~~~~~~~~--g~~~~vef~~~~~~~~~~~~~  109 (464)
T 3pq1_A           53 QRTVLIH-CPEKISENKFLKYLSQFGPINNHFFYESF--GLYAVVEFCQKESIGSLQNGT  109 (464)
T ss_dssp             HTEEEEE-ECCC---CHHHHHHGGGSCCCCEEEECSS--SEEEEEECC---CCHHHHSSC
T ss_pred             cceEEEE-cCCCCCHHHHHHHHHhcCCcceEEEEccC--CeEEEEEeCCHHHHHHHHhcc
Confidence            3789998 79999999999999999999999887644  369999999999999775443

>1whv_A Poly(A)-specific ribonuclease; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, PARN, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1 PDB: 2rok_A*

Probab=95.82  E-value=0.023  Score=43.36  Aligned_cols=66  Identities=23%  Similarity=0.362  Sum_probs=48.9

Q ss_pred             cEEEEeCCCCCCCHHHHHHHhccCCCceEEEEeecCCcCceEEEEecCHHHHHHHHh-cCCCeecCeeEEEEecCCC
Q 026156            6 YVAEVVGLSPNATEKDIHEFFSHCGDPVHVEIIRSGECGGTAYVTFSNAYALETAVL-LSGATIVDQPVCIIRWGEY   81 (242)
Q Consensus         6 ~tV~VsNLs~~~TE~dLrefFs~~G~I~~V~l~~~~~~~~~AfV~F~~~~aA~tAl~-Lng~~l~g~~I~V~~a~~~   81 (242)
                      +.+++ +.|+++...||.+.|+.||. ..|+.+.|    ..|||.|.+++.|..|+. ++    .+...+|..+.++
T Consensus        17 HVf~l-~FP~ewKt~DI~~lFs~fgg-v~I~WidD----TsAlvvf~~~~~a~~al~~i~----k~~~y~i~ty~e~   83 (100)
T 1whv_A           17 HVLHV-TFPKEWKTSDLYQLFSAFGN-IQISWIDD----TSAFVSLSQPEQVQIAVNTSK----YAESYRIQTYAEY   83 (100)
T ss_dssp             SEEEE-ECCTTCCHHHHHHHHTTTCS-CCCEEEET----TEEEEECSCHHHHHHHHHHHH----HCCSSEEEEHHHH
T ss_pred             eEEEE-eCChhhhhHHHHHHhhccCC-EEEEEEcC----CeEEEEecCHHHHHHHHHhcc----cCCceEEEEhHHh
Confidence            44555 99999999999999999994 45666654    379999999999999864 32    1334555555443

>3ctr_A Poly(A)-specific ribonuclease PARN; protein-RNA-complex, M7G-CAP, M7GTP, RNA recognition motif, RRM, cytoplasm, exonuclease, hydrolase, magnesium; HET: MGP; 2.10A {Homo sapiens}

Probab=95.17  E-value=0.03  Score=42.84  Aligned_cols=51  Identities=24%  Similarity=0.378  Sum_probs=42.3

Q ss_pred             cEEEEeCCCCCCCHHHHHHHhccCCCceEEEEeecCCcCceEEEEecCHHHHHHHHh
Q 026156            6 YVAEVVGLSPNATEKDIHEFFSHCGDPVHVEIIRSGECGGTAYVTFSNAYALETAVL   62 (242)
Q Consensus         6 ~tV~VsNLs~~~TE~dLrefFs~~G~I~~V~l~~~~~~~~~AfV~F~~~~aA~tAl~   62 (242)
                      +.++| +.|+++...||.+.|+.||. ..|+.+.|    ..|||.|.+++.|..|+.
T Consensus         7 HV~~l-~FP~ewKt~Di~~lFs~fgg-v~I~WidD----TsAlvvf~~~~~a~~al~   57 (101)
T 3ctr_A            7 HVLHV-TFPKEWKTSDLYQLFSAFGN-IQISWIDD----TSAFVSLSQPEQVKIAVN   57 (101)
T ss_dssp             EEEEE-ECCTTCCHHHHHHHTTTSEE-EEEEEEET----TEEEEEEEEECHHHHHHH
T ss_pred             eEEEE-eCChhhhhHHHHHHHhccCC-EEEEEEcC----CeEEEEecCHHHHHHHHH
Confidence            34555 99999999999999999993 45666654    379999999999999964

>2l08_A Regulator of nonsense transcripts 3A; NESG, nonsense regulator, structural genomics, PSI-2, protei structure initiative; NMR {Homo sapiens}

Probab=94.36  E-value=0.049  Score=41.39  Aligned_cols=66  Identities=17%  Similarity=0.179  Sum_probs=45.8

Q ss_pred             cEEEEeCCCCCCCHHHHHHHhccCCCceEEEEeecCC-----cCceEEEEecCHHHHHHH-HhcCCCeecCe
Q 026156            6 YVAEVVGLSPNATEKDIHEFFSHCGDPVHVEIIRSGE-----CGGTAYVTFSNAYALETA-VLLSGATIVDQ   71 (242)
Q Consensus         6 ~tV~VsNLs~~~TE~dLrefFs~~G~I~~V~l~~~~~-----~~~~AfV~F~~~~aA~tA-l~Lng~~l~g~   71 (242)
                      -.|-|.+|||..||+++.+-++..=++........+-     ....|||.|.+++.+..- ..++|..+.+.
T Consensus        10 ~KvVIRrLPP~Ltee~F~~~l~~~~~~d~~~fv~G~~s~~~~~~SRAYI~F~~~edv~~F~~~f~g~~F~D~   81 (97)
T 2l08_A           10 HMVVIRRLPPGLTKEQLEEQLRPLPAHDYFEFFAADLSLYPHLYSRAYINFRNPDDILLFRDRFDGYIFLDS   81 (97)
T ss_dssp             CCEEEECCCSCSCHHHHTTTTSCCSSEEECCCCCCCSSSCCSCCCCCEEEESCHHHHHHHHHHSTTEEEECT
T ss_pred             eeEEEeCCCCCCCHHHHHHHhCCcCccceEEEeCCccCCCCCcceEEEEEeCCHHHHHHHHHHcCCcEEEeC
Confidence            3689999999999999777665543322222111111     124799999999998887 78999988653

>3d45_A Poly(A)-specific ribonuclease PARN; CAP analogue, exonuclease, hydrolase, magnesium, metal nonsense-mediated mRNA decay, nucleus; HET: 7MG GDP; 3.00A {Mus musculus}

Probab=81.03  E-value=3.5  Score=39.25  Aligned_cols=51  Identities=24%  Similarity=0.408  Sum_probs=41.2

Q ss_pred             CcEEEEeCCCCCCCHHHHHHHhccCCCceEEEEeecCCcCceEEEEecCHHHHHHHH
Q 026156            5 GYVAEVVGLSPNATEKDIHEFFSHCGDPVHVEIIRSGECGGTAYVTFSNAYALETAV   61 (242)
Q Consensus         5 ~~tV~VsNLs~~~TE~dLrefFs~~G~I~~V~l~~~~~~~~~AfV~F~~~~aA~tAl   61 (242)
                      ...++|+ +++.+...+|.+.|+.||. .+|..+.+    ..|||.|.+++.+..++
T Consensus       440 ~~vl~v~-f~~~~~~~~i~~~fs~fg~-v~V~widd----t~a~V~~~~~~~a~~~l  490 (507)
T 3d45_A          440 DHVLHVT-FPKEWKTSDLYQLFSAFGN-IQISWIDD----TSAFVSLSQPEQVQIAV  490 (507)
T ss_dssp             GGEEEEE-CCTTCCHHHHHHHGGGGCC-CEEEECSS----SEEEEECSCHHHHHHHH
T ss_pred             CcEEEEe-CCCCCCHHHHHHHHHhcCC-EEEEEEcC----CeEEEEECCHHHHHHHH
Confidence            3556666 8999999999999999995 45655532    47999999999999984

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	242
d2cpha1	94	d.58.7.1 (A:454-547) Probable RNA-binding protein	6e-08
d1uawa_	77	d.58.7.1 (A:) Musashi-1 {Mouse (Mus musculus) [Tax	9e-08
d1x4ba1	103	d.58.7.1 (A:8-110) Heterogeneous nuclear ribonucle	2e-07
d2f9da1	114	d.58.7.1 (A:12-125) Pre-mRNA branch site protein p	6e-07
d1cvja1	80	d.58.7.1 (A:11-90) Poly(A)-binding protein {Human	3e-06
d1x4ga1	96	d.58.7.1 (A:8-103) Nucleolysin TIAR {Human (Homo s	3e-06
d1no8a_	78	d.58.7.1 (A:) Nuclear factor Aly {Mouse (Mus muscu	5e-06
d1u2fa_	90	d.58.7.1 (A:) Splicing factor U2AF 65 KDa subunit	7e-06
d2cq4a1	101	d.58.7.1 (A:132-232) RNA binding protein 23 {Human	1e-05
d1wwha1	81	d.58.7.1 (A:169-249) Nucleoporin 35 {Mouse (Mus mu	1e-05
d1u1qa_	183	d.58.7.1 (A:) Nuclear ribonucleoprotein A1 (RNP A1	3e-05
d1x0fa1	75	d.58.7.1 (A:183-257) Nuclear ribonucleoprotein D0	3e-05
d1l3ka1	84	d.58.7.1 (A:8-91) Nuclear ribonucleoprotein A1 (RN	5e-05
d2msta_	75	d.58.7.1 (A:) Neural RNA-binding protein Musashi-1	6e-05
d1fjca_	96	d.58.7.1 (A:) Nucleolin {Golden hamster (Mesocrice	6e-05
d2cpfa1	85	d.58.7.1 (A:362-446) Probable RNA-binding protein	8e-05
d1x5ta1	83	d.58.7.1 (A:8-90) Splicing factor 3B subunit 4 {Hu	8e-05
d1h2vz_	93	d.58.7.1 (Z:) CBP20, 20KDa nuclear cap-binding pro	1e-04
d1cvja2	89	d.58.7.1 (A:91-179) Poly(A)-binding protein {Human	2e-04
d1hd0a_	75	d.58.7.1 (A:) Heterogeneous nuclear ribonucleoprot	2e-04
d2cqca1	83	d.58.7.1 (A:109-191) Arginine/serine-rich splicing	3e-04
d1b7fa2	85	d.58.7.1 (A:205-289) Sex-lethal protein {Drosophil	3e-04
d1b7fa1	82	d.58.7.1 (A:123-204) Sex-lethal protein {Drosophil	5e-04
d1wf0a_	88	d.58.7.1 (A:) TAR DNA-binding protein 43, TDP-43 {	6e-04
d2cqga1	90	d.58.7.1 (A:96-185) TAR DNA-binding protein 43, TD	7e-04
d1x5ua1	93	d.58.7.1 (A:7-99) Splicing factor 3B subunit 4 {Hu	8e-04
d2cqpa1	86	d.58.7.1 (A:917-1002) RNA-binding protein 12 {Mous	8e-04
d1fxla2	85	d.58.7.1 (A:119-203) Hu antigen D (Hud) {Human (Ho	8e-04
d2disa1	96	d.58.7.1 (A:8-103) Hypothetical protein FLJ20273 {	0.001
d2ghpa2	75	d.58.7.1 (A:41-115) U4/U6 snRNA-associated-splicin	0.001
d1zh5a2	85	d.58.7.1 (A:105-189) Lupus LA protein {Human (Homo	0.001
d1fxla1	82	d.58.7.1 (A:37-118) Hu antigen D (Hud) {Human (Hom	0.001
d2cq2a1	101	d.58.7.1 (A:25-125) Alkylation repair AlkB homolog	0.002
d1owxa_	113	d.58.7.1 (A:) Lupus LA protein {Human (Homo sapien	0.003
d1weza_	102	d.58.7.1 (A:) Heterogeneous nuclear ribonucleoprot	0.004

>d2cpha1 d.58.7.1 (A:454-547) Probable RNA-binding protein 19, Rbm19 {Mouse (Mus musculus) [TaxId: 10090]} Length = 94

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: Probable RNA-binding protein 19, Rbm19
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 46.9 bits (111), Expect = 6e-08
 Identities = 14/70 (20%), Positives = 27/70 (38%), Gaps = 6/70 (8%)

Query: 10 VVGLSPNATEKDIHEFFSHCGDPVHVEIIR----SGECGGTAYVTFSNAYALETAV--LL 63
          V  +   A +++I E FS  G+   V + +    +G   G  +V F      + A   L 
Sbjct: 13 VRNIPFQANQREIRELFSTFGELKTVRLPKKMTGTGAHRGFGFVDFITKQDAKKAFNALC 72

Query: 64 SGATIVDQPV 73
              +  + +
Sbjct: 73 HSTHLYGRRL 82

>d1uawa_ d.58.7.1 (A:) Musashi-1 {Mouse (Mus musculus) [TaxId: 10090]} Length = 77

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: Musashi-1
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 46.1 bits (109), Expect = 9e-08
 Identities = 12/67 (17%), Positives = 29/67 (43%), Gaps = 3/67 (4%)

Query: 10 VVGLSPNATEKDIHEFFSHCGDPVHVEII---RSGECGGTAYVTFSNAYALETAVLLSGA 66
          + GLS   T++ + E+F   G+     ++    +    G  +VTF +   ++  +  S  
Sbjct: 5  IGGLSWQTTQEGLREYFGQFGEVKECLVMRDPLTKRSRGFGFVTFMDQAGVDKVLAQSRH 64

Query: 67 TIVDQPV 73
           +  + +
Sbjct: 65 ELDSKTI 71

>d1x4ba1 d.58.7.1 (A:8-110) Heterogeneous nuclear ribonucleoproteins A2/B1 {Human (Homo sapiens) [TaxId: 9606]} Length = 103

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: Heterogeneous nuclear ribonucleoproteins A2/B1
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 46.2 bits (109), Expect = 2e-07
 Identities = 15/67 (22%), Positives = 29/67 (43%), Gaps = 3/67 (4%)

Query: 10 VVGLSPNATEKDIHEFFSHCGDPVHVEII---RSGECGGTAYVTFSNAYALETAVLLSGA 66
          + GLS   TE+ +  ++   G      ++    S    G  +VTFS+   ++ A+     
Sbjct: 25 IGGLSFETTEESLRNYYEQWGKLTDCVVMRDPASKRSRGFGFVTFSSMAEVDAAMAARPH 84

Query: 67 TIVDQPV 73
          +I  + V
Sbjct: 85 SIDGRVV 91

>d2f9da1 d.58.7.1 (A:12-125) Pre-mRNA branch site protein p14 {Human (Homo sapiens) [TaxId: 9606]} Length = 114

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: Pre-mRNA branch site protein p14
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 45.0 bits (106), Expect = 6e-07
 Identities = 14/67 (20%), Positives = 32/67 (47%), Gaps = 1/67 (1%)

Query: 10 VVGLSPNATEKDIHEFFSHCGDPVHVEIIRSGECGGTAYVTFSNAYALETAV-LLSGATI 68
          +  L    T +++++ F   G    + +  + E  GTAYV + + +  + A   LSG  +
Sbjct: 12 IRNLPYKITAEEMYDIFGKYGPIRQIRVGNTPETRGTAYVVYEDIFDAKNACDHLSGFNV 71

Query: 69 VDQPVCI 75
           ++ + +
Sbjct: 72 CNRYLVV 78

>d1cvja1 d.58.7.1 (A:11-90) Poly(A)-binding protein {Human (Homo sapiens) [TaxId: 9606]} Length = 80

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: Poly(A)-binding protein
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 42.2 bits (99), Expect = 3e-06
 Identities = 20/68 (29%), Positives = 30/68 (44%), Gaps = 4/68 (5%)

Query: 10 VVGLSPNATEKDIHEFFSHCGDPVHVEIIRSGE---CGGTAYVTFSNAYALETAV-LLSG 65
          V  L P+ TE  ++E FS  G  + + + R        G AYV F      E A+  ++ 
Sbjct: 5  VGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQPADAERALDTMNF 64

Query: 66 ATIVDQPV 73
            I  +PV
Sbjct: 65 DVIKGKPV 72

>d1x4ga1 d.58.7.1 (A:8-103) Nucleolysin TIAR {Human (Homo sapiens) [TaxId: 9606]} Length = 96

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: Nucleolysin TIAR
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 42.3 bits (99), Expect = 3e-06
 Identities = 14/72 (19%), Positives = 31/72 (43%), Gaps = 5/72 (6%)

Query: 10 VVGLSPNATEKDIHEFFSHCGDPVHVEIIRSGECGGTAYVTFSNA-YALETAVLLSGATI 68
            G++   T++ + + FS  G  + + +          + T  +A +A+ +   ++G TI
Sbjct: 23 CGGIASGLTDQLMRQTFSPFGQIMEIRVFPEKGYSFVRFSTHESAAHAIVS---VNGTTI 79

Query: 69 VDQPVCIIRWGE 80
              V    WG+
Sbjct: 80 EGHVV-KCYWGK 90

>d1no8a_ d.58.7.1 (A:) Nuclear factor Aly {Mouse (Mus musculus) [TaxId: 10090]} Length = 78

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: Nuclear factor Aly
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 41.5 bits (97), Expect = 5e-06
 Identities = 17/67 (25%), Positives = 26/67 (38%), Gaps = 3/67 (4%)

Query: 10 VVGLSPNATEKDIHEFFSHCGDPVHVEIIR--SGECGGTAYVTFSNAYALETAVL-LSGA 66
          V  L    ++ DI E F+  G      +    SG   GTA V F        A+   +G 
Sbjct: 5  VSNLDFGVSDADIQELFAEFGTLKKAAVHYDRSGRSLGTADVHFERKADALKAMKQYNGV 64

Query: 67 TIVDQPV 73
           +  +P+
Sbjct: 65 PLDGRPM 71

>d1u2fa_ d.58.7.1 (A:) Splicing factor U2AF 65 KDa subunit {Human (Homo sapiens) [TaxId: 9606]} Length = 90

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: Splicing factor U2AF 65 KDa subunit
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 41.3 bits (96), Expect = 7e-06
 Identities = 15/86 (17%), Positives = 30/86 (34%), Gaps = 10/86 (11%)

Query: 10 VVGLSPNATEKDIHEFFSHCGDPVHVEII--------RSGECGGTAYVTFSNAYALETAV 61
          V  +    TE+ + +FF+       +           +  +    A++ F +      A+
Sbjct: 6  VGNIPFGITEEAMMDFFNAQMRLGGLTQAPGNPVLAVQINQDKNFAFLEFRSVDETTQAM 65

Query: 62 LLSGATIVDQPVCIIRWGEYTDEPNP 87
             G     Q + I R  +Y  +P P
Sbjct: 66 AFDGIIFQGQSLKIRRPHDY--QPLP 89

>d2cq4a1 d.58.7.1 (A:132-232) RNA binding protein 23 {Human (Homo sapiens) [TaxId: 9606]} Length = 101

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: RNA binding protein 23
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 40.8 bits (95), Expect = 1e-05
 Identities = 19/69 (27%), Positives = 32/69 (46%), Gaps = 3/69 (4%)

Query: 10 VVGLSPNATEKDIHEFFSHCGDPVHVEIIR---SGECGGTAYVTFSNAYALETAVLLSGA 66
           + L+     +D+ +FFS  G    V II    S    G AYV F    ++  A+ L+G 
Sbjct: 23 CMQLAARIRPRDLEDFFSAVGKVRDVRIISDRNSRRSKGIAYVEFCEIQSVPLAIGLTGQ 82

Query: 67 TIVDQPVCI 75
           ++  P+ +
Sbjct: 83 RLLGVPIIV 91

>d1wwha1 d.58.7.1 (A:169-249) Nucleoporin 35 {Mouse (Mus musculus) [TaxId: 10090]} Length = 81

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: Nucleoporin 35
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 39.9 bits (93), Expect = 1e-05
 Identities = 7/69 (10%), Positives = 23/69 (33%), Gaps = 4/69 (5%)

Query: 10 VVGLSPNATEKDIHEFFSHCGDPVHVEIIRSGECGGTAYVTFSNAYALETAVLLSGATIV 69
          V G    +    + +F    G+ +   +  +G      ++ + +      A+   G    
Sbjct: 9  VFGFPQASASYILLQFA-QYGNILKHVMSNTGNWM---HIRYQSKLQARKALSKDGRIFG 64

Query: 70 DQPVCIIRW 78
          +  +  ++ 
Sbjct: 65 ESIMIGVKP 73

>d1u1qa_ d.58.7.1 (A:) Nuclear ribonucleoprotein A1 (RNP A1, UP1) {Human (Homo sapiens) [TaxId: 9606]} Length = 183

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: Nuclear ribonucleoprotein A1 (RNP A1, UP1)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 41.1 bits (95), Expect = 3e-05
 Identities = 14/82 (17%), Positives = 27/82 (32%), Gaps = 3/82 (3%)

Query: 10 VVGLSPNATEKDIHEFFSHCGDPVHV---EIIRSGECGGTAYVTFSNAYALETAVLLSGA 66
          + GLS   T++ +   F   G            +    G  +VT++    ++ A+     
Sbjct: 11 IGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTYATVEEVDAAMNARPH 70

Query: 67 TIVDQPVCIIRWGEYTDEPNPW 88
           +  + V   R     D   P 
Sbjct: 71 KVDGRVVEPKRAVSREDSQRPG 92

>d1x0fa1 d.58.7.1 (A:183-257) Nuclear ribonucleoprotein D0 (AUF1) {Human (Homo sapiens) [TaxId: 9606]} Length = 75

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: Nuclear ribonucleoprotein D0 (AUF1)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 39.2 bits (91), Expect = 3e-05
 Identities = 14/62 (22%), Positives = 29/62 (46%), Gaps = 3/62 (4%)

Query: 10 VVGLSPNATEKDIHEFFSHCGDPVHVEII---RSGECGGTAYVTFSNAYALETAVLLSGA 66
          V GLSP+  E+ I E+F   G+   +E+    ++ +  G  ++TF     ++  +     
Sbjct: 4  VGGLSPDTPEEKIREYFGGFGEVESIELPMDNKTNKRRGFCFITFKEEEPVKKIMEKKYH 63

Query: 67 TI 68
           +
Sbjct: 64 NV 65

>d1l3ka1 d.58.7.1 (A:8-91) Nuclear ribonucleoprotein A1 (RNP A1, UP1) {Human (Homo sapiens) [TaxId: 9606]} Length = 84

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: Nuclear ribonucleoprotein A1 (RNP A1, UP1)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 38.9 bits (90), Expect = 5e-05
 Identities = 11/67 (16%), Positives = 26/67 (38%), Gaps = 3/67 (4%)

Query: 10 VVGLSPNATEKDIHEFFSHCGDPVHVEII---RSGECGGTAYVTFSNAYALETAVLLSGA 66
          + GLS   T++ +   F   G      ++    +    G  +VT++    ++ A+     
Sbjct: 11 IGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTYATVEEVDAAMNARPH 70

Query: 67 TIVDQPV 73
           +  + V
Sbjct: 71 KVDGRVV 77

>d2msta_ d.58.7.1 (A:) Neural RNA-binding protein Musashi-1 {Mouse (Mus musculus) [TaxId: 10090]} Length = 75

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: Neural RNA-binding protein Musashi-1
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 38.2 bits (88), Expect = 6e-05
 Identities = 16/67 (23%), Positives = 27/67 (40%), Gaps = 3/67 (4%)

Query: 10 VVGLSPNATEKDIHEFFSHCGDPVHVEIIRSGE---CGGTAYVTFSNAYALETAVLLSGA 66
          V GLS N T +D+  +F   G      ++         G  +VTF +   +E    +   
Sbjct: 4  VGGLSVNTTVEDVKHYFEQFGKVDDAMLMFDKTTNRHRGFGFVTFESEDIVEKVCEIHFH 63

Query: 67 TIVDQPV 73
           I ++ V
Sbjct: 64 EINNKMV 70

>d1fjca_ d.58.7.1 (A:) Nucleolin {Golden hamster (Mesocricetus auratus) [TaxId: 10036]} Length = 96

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: Nucleolin
species: Golden hamster (Mesocricetus auratus) [TaxId: 10036]

 Score = 38.5 bits (89), Expect = 6e-05
 Identities = 18/65 (27%), Positives = 26/65 (40%), Gaps = 3/65 (4%)

Query: 10 VVGLSPNATEKDIHEFFSHCGDPVHVEIIRSGECGGTAYVTFSNAYALETAV-LLSGATI 68
             LS N TE ++ E F    +   V     G+  G AY+ F +    E  +    GA I
Sbjct: 21 AKNLSFNITEDELKEVFEDALEIRLVSQ--DGKSKGIAYIEFKSEADAEKNLEEKQGAEI 78

Query: 69 VDQPV 73
            + V
Sbjct: 79 DGRSV 83

>d2cpfa1 d.58.7.1 (A:362-446) Probable RNA-binding protein 19, Rbm19 {Mouse (Mus musculus) [TaxId: 10090]} Length = 85

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: Probable RNA-binding protein 19, Rbm19
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 38.1 bits (88), Expect = 8e-05
 Identities = 15/83 (18%), Positives = 28/83 (33%), Gaps = 8/83 (9%)

Query: 10 VVGLSPNATEKDIHEFFSHCGD------PVHVEIIRSGECGGTAYVTFSNAYALETAVL- 62
          +  L+ + TE+ +   FS  G                    G  +V +      + A+  
Sbjct: 3  IKNLNFSTTEETLKGVFSKVGAIKSCTISKKKNKAGVLLSMGFGFVEYKKPEQAQKALKQ 62

Query: 63 LSGATIVDQPVCIIRWGEYTDEP 85
          L G T+    +  +R  E   +P
Sbjct: 63 LQGHTVDGHKL-EVRISERATKP 84

>d1x5ta1 d.58.7.1 (A:8-90) Splicing factor 3B subunit 4 {Human (Homo sapiens) [TaxId: 9606]} Length = 83

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: Splicing factor 3B subunit 4
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 38.2 bits (88), Expect = 8e-05
 Identities = 14/73 (19%), Positives = 29/73 (39%), Gaps = 4/73 (5%)

Query: 10 VVGLSPNATEKDIHEFFSHCGDPVHVEII----RSGECGGTAYVTFSNAYALETAVLLSG 65
          +  L P   EK +++ FS  G  +    I     +G   G A++ F++  A + A+    
Sbjct: 3  IGNLDPEIDEKLLYDTFSAFGVILQTPKIMRDPDTGNSKGYAFINFASFDASDAAIEAMN 62

Query: 66 ATIVDQPVCIIRW 78
             +      + +
Sbjct: 63 GQYLCNRPITVSY 75

>d1h2vz_ d.58.7.1 (Z:) CBP20, 20KDa nuclear cap-binding protein {Human (Homo sapiens) [TaxId: 9606]} Length = 93

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: CBP20, 20KDa nuclear cap-binding protein
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 38.0 bits (88), Expect = 1e-04
 Identities = 17/70 (24%), Positives = 30/70 (42%), Gaps = 4/70 (5%)

Query: 10 VVGLSPNATEKDIHEFFSHCGDPVHVEII---RSGECGGTAYVTFSNAYALETAV-LLSG 65
          V  LS   TE+ I+E FS  GD   + +          G  +V + +    E A+  ++G
Sbjct: 12 VGNLSFYTTEEQIYELFSKSGDIKKIIMGLDKMKKTACGFCFVEYYSRADAENAMRYING 71

Query: 66 ATIVDQPVCI 75
            + D+ +  
Sbjct: 72 TRLDDRIIRT 81

>d1cvja2 d.58.7.1 (A:91-179) Poly(A)-binding protein {Human (Homo sapiens) [TaxId: 9606]} Length = 89

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: Poly(A)-binding protein
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 37.3 bits (86), Expect = 2e-04
 Identities = 14/66 (21%), Positives = 30/66 (45%), Gaps = 2/66 (3%)

Query: 10 VVGLSPNATEKDIHEFFSHCGDPVHVEIIRSGE-CGGTAYVTFSNAYALETAV-LLSGAT 67
          +  L  +   K +++ FS  G+ +  +++       G  +V F    A E A+  ++G  
Sbjct: 13 IKNLDKSIDNKALYDTFSAFGNILSCKVVCDENGSKGYGFVHFETQEAAERAIEKMNGML 72

Query: 68 IVDQPV 73
          + D+ V
Sbjct: 73 LNDRKV 78

>d1hd0a_ d.58.7.1 (A:) Heterogeneous nuclear ribonucleoprotein d0 {Human (Homo sapiens) [TaxId: 9606]} Length = 75

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: Heterogeneous nuclear ribonucleoprotein d0
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 36.9 bits (85), Expect = 2e-04
 Identities = 14/67 (20%), Positives = 32/67 (47%), Gaps = 3/67 (4%)

Query: 10 VVGLSPNATEKDIHEFFSHCGDPVHVEII---RSGECGGTAYVTFSNAYALETAVLLSGA 66
          + GLS + T+KD+ ++FS  G+ V   +     +G   G  +V F  + +++  +     
Sbjct: 4  IGGLSWDTTKKDLKDYFSKFGEVVDCTLKLDPITGRSRGFGFVLFKESESVDKVMDQKEH 63

Query: 67 TIVDQPV 73
           +  + +
Sbjct: 64 KLNGKVI 70

>d2cqca1 d.58.7.1 (A:109-191) Arginine/serine-rich splicing factor 10 {Human (Homo sapiens) [TaxId: 9606]} Length = 83

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: Arginine/serine-rich splicing factor 10
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 36.6 bits (84), Expect = 3e-04
 Identities = 21/68 (30%), Positives = 30/68 (44%), Gaps = 4/68 (5%)

Query: 10 VVGLSPNATEKDIHEFFSHCGDPVHVEI---IRSGECGGTAYVTFSNAYALETAV-LLSG 65
          V GLS   TE+D+ E FS  G    V I    +S    G A+V F N    + A    +G
Sbjct: 14 VFGLSLYTTERDLREVFSKYGPIADVSIVYDQQSRRSRGFAFVYFENVDDAKEAKERANG 73

Query: 66 ATIVDQPV 73
            +  + +
Sbjct: 74 MELDGRRI 81

>d1b7fa2 d.58.7.1 (A:205-289) Sex-lethal protein {Drosophila melanogaster [TaxId: 7227]} Length = 85

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: Sex-lethal protein
species: Drosophila melanogaster [TaxId: 7227]

 Score = 36.5 bits (84), Expect = 3e-04
 Identities = 12/55 (21%), Positives = 20/55 (36%), Gaps = 3/55 (5%)

Query: 10 VVGLSPNATEKDIHEFFSHCGDPVHVEIIRSGE---CGGTAYVTFSNAYALETAV 61
          V  L    T+  +   F   G  V   I+R        G A+V ++     + A+
Sbjct: 11 VTNLPRTITDDQLDTIFGKYGSIVQKNILRDKLTGRPRGVAFVRYNKREEAQEAI 65

>d1b7fa1 d.58.7.1 (A:123-204) Sex-lethal protein {Drosophila melanogaster [TaxId: 7227]} Length = 82

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: Sex-lethal protein
species: Drosophila melanogaster [TaxId: 7227]

 Score = 35.7 bits (82), Expect = 5e-04
 Identities = 16/68 (23%), Positives = 35/68 (51%), Gaps = 4/68 (5%)

Query: 10 VVGLSPNATEKDIHEFFSHCGDPVHVEIIRSGECG---GTAYVTFSNAYALETAV-LLSG 65
          V  L  + T+++++  F   G      I+R  + G   G A+V F++    + A+ +L+G
Sbjct: 7  VNYLPQDMTDRELYALFRAIGPINTCRIMRDYKTGYSYGYAFVDFTSEMDSQRAIKVLNG 66

Query: 66 ATIVDQPV 73
           T+ ++ +
Sbjct: 67 ITVRNKRL 74

>d1wf0a_ d.58.7.1 (A:) TAR DNA-binding protein 43, TDP-43 {Human (Homo sapiens) [TaxId: 9606]} Length = 88

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: TAR DNA-binding protein 43, TDP-43
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 35.8 bits (82), Expect = 6e-04
 Identities = 15/52 (28%), Positives = 26/52 (50%), Gaps = 2/52 (3%)

Query: 10 VVGLSPNATEKDIHEFFSHCGDPVHVEIIRSGECGGTAYVTFSNAYALETAV 61
          V   + + TE ++ EFFS  GD + V I +       A+VTF++    ++  
Sbjct: 10 VGRCTGDMTEDELREFFSQYGDVMDVFIPK--PFRAFAFVTFADDQIAQSLC 59

>d2cqga1 d.58.7.1 (A:96-185) TAR DNA-binding protein 43, TDP-43 {Human (Homo sapiens) [TaxId: 9606]} Length = 90

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: TAR DNA-binding protein 43, TDP-43
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 35.7 bits (82), Expect = 7e-04
 Identities = 15/55 (27%), Positives = 28/55 (50%), Gaps = 3/55 (5%)

Query: 10 VVGLSPNATEKDIHEFFSHCGDPVHVEII---RSGECGGTAYVTFSNAYALETAV 61
          V+GL    TE+D+ E+FS  G+ + V++    ++G   G  +V F+        +
Sbjct: 13 VLGLPWKTTEQDLKEYFSTFGEVLMVQVKKDLKTGHSKGFGFVRFTEYETQVKVM 67

>d1x5ua1 d.58.7.1 (A:7-99) Splicing factor 3B subunit 4 {Human (Homo sapiens) [TaxId: 9606]} Length = 93

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: Splicing factor 3B subunit 4
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 35.4 bits (81), Expect = 8e-04
 Identities = 13/68 (19%), Positives = 28/68 (41%), Gaps = 4/68 (5%)

Query: 10 VVGLSPNATEKDIHEFFSHCG---DPVHVEIIRSGECGGTAYVTFSNAYALETAV-LLSG 65
          V GL    +E  + E F   G   +    +   +G+  G  +V F +    + A+ ++  
Sbjct: 14 VGGLDEKVSEPLLWELFLQAGPVVNTHMPKDRVTGQHQGYGFVEFLSEEDADYAIKIMDM 73

Query: 66 ATIVDQPV 73
            +  +P+
Sbjct: 74 IKLYGKPI 81

>d2cqpa1 d.58.7.1 (A:917-1002) RNA-binding protein 12 {Mouse (Mus musculus) [TaxId: 10090]} Length = 86

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: RNA-binding protein 12
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 35.4 bits (81), Expect = 8e-04
 Identities = 16/74 (21%), Positives = 28/74 (37%), Gaps = 4/74 (5%)

Query: 4  GGYVAEVVGLSPNATEKDIHEFFSHCGDPVHVEIIRSGECG---GTAYVTFSNAYALETA 60
          G  + +V  +    +  +I +FF           ++  E G   G A V F +      A
Sbjct: 8  GPTIIKVQNMPFTVSIDEILDFFYGYQVIPGSVCLKYNEKGMPTGEAMVAFESRDEATAA 67

Query: 61 VL-LSGATIVDQPV 73
          V+ L+   I  + V
Sbjct: 68 VIDLNDRPIGSRKV 81

>d1fxla2 d.58.7.1 (A:119-203) Hu antigen D (Hud) {Human (Homo sapiens) [TaxId: 9606]} Length = 85

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: Hu antigen D (Hud)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 35.4 bits (81), Expect = 8e-04
 Identities = 13/55 (23%), Positives = 22/55 (40%), Gaps = 3/55 (5%)

Query: 10 VVGLSPNATEKDIHEFFSHCGDPVHVEIIRSGEC---GGTAYVTFSNAYALETAV 61
          V GL    T+K++ + FS  G  +   I+         G  ++ F      E A+
Sbjct: 11 VSGLPKTMTQKELEQLFSQYGRIITSRILVDQVTGVSRGVGFIRFDKRIEAEEAI 65

>d2disa1 d.58.7.1 (A:8-103) Hypothetical protein FLJ20273 {Human (Homo sapiens) [TaxId: 9606]} Length = 96

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: Hypothetical protein FLJ20273
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 35.1 bits (80), Expect = 0.001
 Identities = 14/89 (15%), Positives = 31/89 (34%), Gaps = 7/89 (7%)

Query: 10 VVGLSPNATEKDIHEFFSHCGDP-VHVEIIRSGECG----GTAYVTFSNAYALETAV--L 62
          + G+      ++I E  +   +  + V +  S        G A+V + +  A   A   L
Sbjct: 6  IGGIPKMKKREEILEEIAKVTEGVLDVIVYASAADKMKNRGFAFVEYESHRAAAMARRKL 65

Query: 63 LSGATIVDQPVCIIRWGEYTDEPNPWISS 91
          + G   +      + W E   + +  +  
Sbjct: 66 MPGRIQLWGHQIAVDWAEPEIDVDEDVME 94

>d2ghpa2 d.58.7.1 (A:41-115) U4/U6 snRNA-associated-splicing factor PRP24 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 75

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: U4/U6 snRNA-associated-splicing factor PRP24
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 34.4 bits (78), Expect = 0.001
 Identities = 12/67 (17%), Positives = 29/67 (43%), Gaps = 1/67 (1%)

Query: 10 VVGLSPNATEKDIHEFFSHCGDPVHVEIIRSGECG-GTAYVTFSNAYALETAVLLSGATI 68
          V  L  +  +  ++++F HCG  +HV++  S +     A + F+       A+  +   +
Sbjct: 5  VKNLPKSYNQNKVYKYFKHCGPIIHVDVADSLKKNFRFARIEFARYDGALAAITKTHKVV 64

Query: 69 VDQPVCI 75
              + +
Sbjct: 65 GQNEIIV 71

>d1zh5a2 d.58.7.1 (A:105-189) Lupus LA protein {Human (Homo sapiens) [TaxId: 9606]} Length = 85

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: Lupus LA protein
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 34.7 bits (79), Expect = 0.001
 Identities = 13/73 (17%), Positives = 28/73 (38%), Gaps = 3/73 (4%)

Query: 10 VVGLSPNATEKDIHEFFSHCGDP--VHVEIIRSGECGGTAYVTFSNAYALETAVLLSGAT 67
          + G   +AT  DI E+    G    + +         G+ +V F +  + +  V   G  
Sbjct: 11 IKGFPTDATLDDIKEWLEDKGQVLNIQMRRTLHKAFKGSIFVVFDSIESAKKFVETPGQK 70

Query: 68 IVDQPVCIIRWGE 80
            +  + +I + +
Sbjct: 71 YKETDL-LILFKD 82

>d1fxla1 d.58.7.1 (A:37-118) Hu antigen D (Hud) {Human (Homo sapiens) [TaxId: 9606]} Length = 82

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: Hu antigen D (Hud)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 34.3 bits (78), Expect = 0.001
 Identities = 14/68 (20%), Positives = 28/68 (41%), Gaps = 4/68 (5%)

Query: 10 VVGLSPNATEKDIHEFFSHCGDP---VHVEIIRSGECGGTAYVTFSNAYALETAV-LLSG 65
          V  L  N T+++    F   G+      V    +G+  G  +V + +    E A+  L+G
Sbjct: 7  VNYLPQNMTQEEFRSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKAINTLNG 66

Query: 66 ATIVDQPV 73
            +  + +
Sbjct: 67 LRLQTKTI 74

>d2cq2a1 d.58.7.1 (A:25-125) Alkylation repair AlkB homolog 8, ALKBH8 {Human (Homo sapiens) [TaxId: 9606]} Length = 101

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: Alkylation repair AlkB homolog 8, ALKBH8
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 34.7 bits (79), Expect = 0.002
 Identities = 9/61 (14%), Positives = 20/61 (32%), Gaps = 4/61 (6%)

Query: 12 GLSPNATEKDIHEFFSHCGDPVHVEIIRSGECGGTAYVTFSNAYALETAV-LLSGATIVD 70
          GL    +   +      CG    + +  +      ++  +      + A   L+G  +VD
Sbjct: 27 GLGNGVSRNQLLPVLEKCGLVDALLMPPNKPY---SFARYRTTEESKRAYVTLNGKEVVD 83

Query: 71 Q 71
           
Sbjct: 84 D 84

>d1owxa_ d.58.7.1 (A:) Lupus LA protein {Human (Homo sapiens) [TaxId: 9606]} Length = 113

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: Lupus LA protein
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 34.4 bits (78), Expect = 0.003
 Identities = 13/82 (15%), Positives = 25/82 (30%), Gaps = 6/82 (7%)

Query: 10 VVGLSPNATEKDIHEFFSHCGDPVHVEIIRSGECGGTAYVTFSNAY--ALETAVLLSGAT 67
             L      +D+H  FS+ G+   ++ +R         + F      AL  A   +   
Sbjct: 16 SGDLDDQTCREDLHILFSNHGEIKWIDFVR---GAKEGIILFKEKAKEALGKAKDANNGN 72

Query: 68 IVDQPVCI-IRWGEYTDEPNPW 88
          +  +   +     E   E    
Sbjct: 73 LQLRNKEVTWEVLEGEVEKEAL 94

>d1weza_ d.58.7.1 (A:) Heterogeneous nuclear ribonucleoprotein H' {Human (Homo sapiens) [TaxId: 9606]} Length = 102

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: Heterogeneous nuclear ribonucleoprotein H'
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 33.6 bits (76), Expect = 0.004
 Identities = 20/70 (28%), Positives = 27/70 (38%), Gaps = 1/70 (1%)

Query: 5  GYVAEVVGLSPNATEKDIHEFFSHCGDPVHVEIIR-SGECGGTAYVTFSNAYALETAVLL 63
          G+   + GL   ATE DI+ FFS          I   G   G A V F+       A+  
Sbjct: 15 GHCVHMRGLPYRATENDIYNFFSPLNPMRVHIEIGPDGRVTGEADVEFATHEDAVAAMAK 74

Query: 64 SGATIVDQPV 73
            A +  + V
Sbjct: 75 DKANMQHRYV 84

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	242
d2ghpa2	75	U4/U6 snRNA-associated-splicing factor PRP24 {Bake	99.78
d1l3ka2	79	Nuclear ribonucleoprotein A1 (RNP A1, UP1) {Human	99.74
d1x5sa1	90	Cold-inducible RNA-binding protein {Human (Homo sa	99.74
d2cqba1	89	Peptidyl-prolyl cis-trans isomerase E, N-terminal	99.73
d1l3ka1	84	Nuclear ribonucleoprotein A1 (RNP A1, UP1) {Human	99.72
d1b7fa1	82	Sex-lethal protein {Drosophila melanogaster [TaxId	99.72
d1hd0a_	75	Heterogeneous nuclear ribonucleoprotein d0 {Human	99.71
d1uawa_	77	Musashi-1 {Mouse (Mus musculus) [TaxId: 10090]}	99.71
d1fxla1	82	Hu antigen D (Hud) {Human (Homo sapiens) [TaxId: 9	99.71
d2cqia1	90	Nucleolysin TIAR {Human (Homo sapiens) [TaxId: 960	99.7
d1cvja2	89	Poly(A)-binding protein {Human (Homo sapiens) [Tax	99.7
d1x4ba1	103	Heterogeneous nuclear ribonucleoproteins A2/B1 {Hu	99.7
d1h2vz_	93	CBP20, 20KDa nuclear cap-binding protein {Human (H	99.7
d2cq4a1	101	RNA binding protein 23 {Human (Homo sapiens) [TaxI	99.7
d2msta_	75	Neural RNA-binding protein Musashi-1 {Mouse (Mus m	99.7
d2f9da1	114	Pre-mRNA branch site protein p14 {Human (Homo sapi	99.69
d2ghpa3	86	U4/U6 snRNA-associated-splicing factor PRP24 {Bake	99.69
d1whwa_	99	Probable RNA-binding protein 19, Rbm19 {Mouse (Mus	99.69
d2cq3a1	93	RNA-binding protein 9 {Human (Homo sapiens) [TaxId	99.69
d1zh5a2	85	Lupus LA protein {Human (Homo sapiens) [TaxId: 960	99.69
d2cpfa1	85	Probable RNA-binding protein 19, Rbm19 {Mouse (Mus	99.68
d1wf0a_	88	TAR DNA-binding protein 43, TDP-43 {Human (Homo sa	99.68
d1cvja1	80	Poly(A)-binding protein {Human (Homo sapiens) [Tax	99.68
d2cqda1	103	RNA-binding region containing protein 1 {Human (Ho	99.68
d1no8a_	78	Nuclear factor Aly {Mouse (Mus musculus) [TaxId: 1	99.68
d2ghpa1	81	U4/U6 snRNA-associated-splicing factor PRP24 {Bake	99.68
d1rk8a_	88	RNA-binding protein 8 {Fruit fly (Drosophila melan	99.67
d2u2fa_	85	Splicing factor U2AF 65 KDa subunit {Human (Homo s	99.67
d2cqca1	83	Arginine/serine-rich splicing factor 10 {Human (Ho	99.67
d1x0fa1	75	Nuclear ribonucleoprotein D0 (AUF1) {Human (Homo s	99.67
d1x5ua1	93	Splicing factor 3B subunit 4 {Human (Homo sapiens)	99.66
d1x4aa1	95	Splicing factor, arginine/serine-rich 1, SFRS1 {Hu	99.66
d2cq0a1	90	Eukaryotic translation initiation factor 3 subunit	99.66
d2cqga1	90	TAR DNA-binding protein 43, TDP-43 {Human (Homo sa	99.66
d1wi8a_	104	Eukaryotic translation initiation factor 4B {Human	99.65
d2adca1	109	Polypyrimidine tract-binding protein {Human (Homo	99.64
d2cpja1	86	Non-POU domain-containing octamer-binding protein,	99.64
d1p1ta_	104	Cleavage stimulation factor, 64 kda subunit {Human	99.64
d2cpza1	102	CUG triplet repeat RNA-binding protein 1 {Human (H	99.64
d1u6fa1	139	RNA-binding protein UBP1 {Trypanosoma cruzi [TaxId	99.64
d1x4ga1	96	Nucleolysin TIAR {Human (Homo sapiens) [TaxId: 960	99.64
d1whxa_	111	Probable RNA-binding protein 19, Rbm19 {Mouse (Mus	99.64
d1fjeb1	91	Nucleolin {Golden hamster (Mesocricetus auratus) [	99.64
d1weza_	102	Heterogeneous nuclear ribonucleoprotein H' {Human	99.64
d1fxla2	85	Hu antigen D (Hud) {Human (Homo sapiens) [TaxId: 9	99.63
d2cpia1	89	E3 ubiquitin protein ligase CNOT4 {Mouse (Mus musc	99.63
d1b7fa2	85	Sex-lethal protein {Drosophila melanogaster [TaxId	99.63
d1wg5a_	104	Heterogeneous nuclear ribonucleoprotein H' {Human	99.62
d1x4ha1	98	RNA-binding protein 28 {Mouse (Mus musculus) [TaxI	99.62
d2cpha1	94	Probable RNA-binding protein 19, Rbm19 {Mouse (Mus	99.62
d2cpya1	103	RNA-binding protein 12 {Human (Homo sapiens) [TaxI	99.62
d1x5ta1	83	Splicing factor 3B subunit 4 {Human (Homo sapiens)	99.61
d2cpda1	86	APOBEC1 stimulating protein {Human (Homo sapiens)	99.61
d2cpea1	101	RNA-binding protein EWS {Human (Homo sapiens) [Tax	99.6
d3begb1	87	Splicing factor, arginine/serine-rich 1, SFRS1 {Hu	99.59
d1x5oa1	101	RNA-binding motif, single-stranded-interacting pro	99.59
d1wf2a_	98	Heterogeneous nuclear ribonucleoproteins C1/C2 {Hu	99.59
d2bz2a1	79	Negative elongation factor E, NELF-E {Human (Homo	99.59
d1u2fa_	90	Splicing factor U2AF 65 KDa subunit {Human (Homo s	99.59
d1wg4a_	98	Splicing factor, arginine/serine-rich 9 (SFRS9) {M	99.59
d1wg1a_	88	Probable RNA-binding protein KIAA1579 {Human (Homo	99.59
d1nu4a_	91	Splicesomal U1A protein {Human (Homo sapiens) [Tax	99.58
d2adca2	88	Polypyrimidine tract-binding protein {Human (Homo	99.57
d2cqpa1	86	RNA-binding protein 12 {Mouse (Mus musculus) [TaxI	99.56
d2cqha1	80	IGF-II mRNA-binding protein 2 isoform A {Human (Ho	99.55
d2b0ga1	83	Splicesomal U1A protein {Drosophila melanogaster [	99.55
d1x4ea1	72	RNA-binding motif, single-stranded-interacting pro	99.55
d1wela1	112	RNA-binding protein 12 {Human (Homo sapiens) [TaxI	99.54
d1fjca_	96	Nucleolin {Golden hamster (Mesocricetus auratus) [	99.53
d2cq1a1	88	Polypyrimidine tract-binding protein 2, PTBP2 {Hum	99.52
d1whya_	97	Putative RNA-binding protein 15B, Rbm15b {Mouse (M	99.51
d2adba1	108	Polypyrimidine tract-binding protein {Human (Homo	99.5
d2disa1	96	Hypothetical protein FLJ20273 {Human (Homo sapiens	99.5
d2cpxa1	102	RNA-binding protein 41, RBM41 {Human (Homo sapiens	99.5
d1wexa_	104	Heterogeneous nuclear ribonucleoprotein L-like {Mo	99.5
d1x4fa1	99	Matrin 3 {Mouse (Mus musculus) [TaxId: 10090]}	99.48
d1wi6a1	75	Ribonucleoprotein PTB-binding 1, Raver-1 {Mouse (M	99.48
d1u1qa_	183	Nuclear ribonucleoprotein A1 (RNP A1, UP1) {Human	99.47
d1x4da1	89	Matrin 3 {Mouse (Mus musculus) [TaxId: 10090]}	99.46
d1wwha1	81	Nucleoporin 35 {Mouse (Mus musculus) [TaxId: 10090	99.45
d1weya_	104	Calcipressin-1 {Mouse (Mus musculus) [TaxId: 10090	99.39
d1u1qa_	183	Nuclear ribonucleoprotein A1 (RNP A1, UP1) {Human	99.37
d1owxa_	113	Lupus LA protein {Human (Homo sapiens) [TaxId: 960	99.33
d2cq2a1	101	Alkylation repair AlkB homolog 8, ALKBH8 {Human (H	99.26
U2AF35 (35 KDa subunit) {Human (Homo sapiens) [TaxId: 9606]}" target="_blank" href="http://scop.mrc-lmb.cam.ac.uk/scop/search.cgi?sid=d1jmta_">d1jmta_	104	U2	99.16
d2dita1	99	HIV Tat-specific factor 1 {Human (Homo sapiens) [T	99.13
d1o0pa_	104	Splicing factor U2AF 65 KDa subunit {Human (Homo s	98.9
d1ufwa_	95	Synaptojanin 2 {Human (Homo sapiens) [TaxId: 9606]	97.43
d1uw4a_	91	RNA processing protein UPF3x, RRM domain {Human (H	97.02
d2dgxa1	73	Limkain-b1, LKAP {Human (Homo sapiens) [TaxId: 960	96.83
d1whva_	100	Poly(A)-specific ribonuclease PARN {Mouse (Mus mus	87.21

>d2ghpa2 d.58.7.1 (A:41-115) U4/U6 snRNA-associated-splicing factor PRP24 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: U4/U6 snRNA-associated-splicing factor PRP24
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.78  E-value=4.4e-19  Score=127.67  Aligned_cols=73  Identities=16%  Similarity=0.251  Sum_probs=67.9

Q ss_pred             cEEEEeCCCCCCCHHHHHHHhccCCCceEEEEeecCC-cCceEEEEecCHHHHHHHHhcCCCeecCeeEEEEec
Q 026156            6 YVAEVVGLSPNATEKDIHEFFSHCGDPVHVEIIRSGE-CGGTAYVTFSNAYALETAVLLSGATIVDQPVCIIRW   78 (242)
Q Consensus         6 ~tV~VsNLs~~~TE~dLrefFs~~G~I~~V~l~~~~~-~~~~AfV~F~~~~aA~tAl~Lng~~l~g~~I~V~~a   78 (242)
                      +||||+|||+++++++|++||+.||+|.+|+|.++++ ..++|||+|.++++|+.|+.+||..|+|++|.|...
T Consensus         1 Ttv~V~nlp~~~t~~~l~~~F~~~G~I~~v~~~~~~~~~~~~afV~F~~~~~a~~Al~~~~~~i~g~~i~V~~~   74 (75)
T d2ghpa2           1 TTVLVKNLPKSYNQNKVYKYFKHCGPIIHVDVADSLKKNFRFARIEFARYDGALAAITKTHKVVGQNEIIVSHL   74 (75)
T ss_dssp             CEEEEEEECTTCCHHHHHHHHGGGSCEEEEEEEECTTSSSEEEEEEESSHHHHHHHHTTTTCEETTEECEEEEC
T ss_pred             CEEEEECCCCCCCHHHHHHHHhcCCceEEEEEEeeccccceEEEEEEcchHHhHHHHHhcCcEECCEEEEEEEC
Confidence            4899999999999999999999999999999997754 346999999999999999999999999999999865

>d1l3ka2 d.58.7.1 (A:103-181) Nuclear ribonucleoprotein A1 (RNP A1, UP1) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: Nuclear ribonucleoprotein A1 (RNP A1, UP1)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.74  E-value=5.3e-18  Score=121.95  Aligned_cols=74  Identities=19%  Similarity=0.292  Sum_probs=68.1

Q ss_pred             CcEEEEeCCCCCCCHHHHHHHhccCCCceEEEEeecCCc---CceEEEEecCHHHHHHHHhcCCCeecCeeEEEEec
Q 026156            5 GYVAEVVGLSPNATEKDIHEFFSHCGDPVHVEIIRSGEC---GGTAYVTFSNAYALETAVLLSGATIVDQPVCIIRW   78 (242)
Q Consensus         5 ~~tV~VsNLs~~~TE~dLrefFs~~G~I~~V~l~~~~~~---~~~AfV~F~~~~aA~tAl~Lng~~l~g~~I~V~~a   78 (242)
                      .++|||+|||+++|+++|+++|+.||.|..+.+..++.+   .++|||+|.++++++.|+.+||..|+|++|.|..+
T Consensus         2 ~r~lfV~nLp~~~te~~l~~~F~~~G~i~~~~~~~~~~~~~~~g~afV~f~~~e~~~~al~~~~~~l~Gr~i~V~~A   78 (79)
T d1l3ka2           2 VKKIFVGGIKEDTEEHHLRDYFEQYGKIEVIEIMTDRGSGKKRGFAFVTFDDHDSVDKIVIQKYHTVNGHNCEVRKA   78 (79)
T ss_dssp             CSEEEEECCTTTCCHHHHHHHHTTTSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHCSCCEETTEECEEEEC
T ss_pred             CCEEEECCCCCcCCHHHHHHHHHHhccccccccccCCCCcccccEEEEEEcCHHHHHHHHHhCCCEECCEEEEEEEC
Confidence            479999999999999999999999999999999977543   36999999999999999999999999999999865

>d1x5sa1 d.58.7.1 (A:8-97) Cold-inducible RNA-binding protein {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: Cold-inducible RNA-binding protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.74  E-value=2.2e-18  Score=127.12  Aligned_cols=81  Identities=23%  Similarity=0.346  Sum_probs=73.5

Q ss_pred             CCCCCcEEEEeCCCCCCCHHHHHHHhccCCCceEEEEeecCC---cCceEEEEecCHHHHHHHH-hcCCCeecCeeEEEE
Q 026156            1 MYAGGYVAEVVGLSPNATEKDIHEFFSHCGDPVHVEIIRSGE---CGGTAYVTFSNAYALETAV-LLSGATIVDQPVCII   76 (242)
Q Consensus         1 M~~~~~tV~VsNLs~~~TE~dLrefFs~~G~I~~V~l~~~~~---~~~~AfV~F~~~~aA~tAl-~Lng~~l~g~~I~V~   76 (242)
                      |+++.++|||+|||+++++++|++||+.||+|..+.++.+..   ..++|||+|.++++|+.|+ .|||..|+|++|.|.
T Consensus         1 m~~~~~kifV~nLp~~~t~~~l~~~F~~~G~i~~~~~~~~~~~~~~~g~afV~f~~~~~a~~Ai~~l~~~~~~g~~l~V~   80 (90)
T d1x5sa1           1 MASDEGKLFVGGLSFDTNEQSLEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAKDAMMAMNGKSVDGRQIRVD   80 (90)
T ss_dssp             CCCCCSEEEEESCCTTCCHHHHHHHHHHHSCCCEEEECCCSSSCSCCSEEEEECSSHHHHHHHHHHHTTCCTTSCCCEEE
T ss_pred             CCCCCCEEEEECCCCcCCHHHHHHhhhccccccceeeccccccccccceEEEEECCHHHHHHHHHHcCCCEECCEEEEEE
Confidence            899999999999999999999999999999999999886533   3469999999999999995 899999999999999


Q ss_pred             ecCCC
Q 026156           77 RWGEY   81 (242)
Q Consensus        77 ~a~~~   81 (242)
                      .+.+.
T Consensus        81 ~a~~~   85 (90)
T d1x5sa1          81 QAGKS   85 (90)
T ss_dssp             EEECC
T ss_pred             EcCCC
Confidence            87543

>d2cqba1 d.58.7.1 (A:1-89) Peptidyl-prolyl cis-trans isomerase E, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: Peptidyl-prolyl cis-trans isomerase E, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.73  E-value=3.5e-18  Score=126.18  Aligned_cols=79  Identities=23%  Similarity=0.245  Sum_probs=72.6

Q ss_pred             CCCCCcEEEEeCCCCCCCHHHHHHHhccCCCceEEEEeecCC---cCceEEEEecCHHHHHHHH-hcCCCeecCeeEEEE
Q 026156            1 MYAGGYVAEVVGLSPNATEKDIHEFFSHCGDPVHVEIIRSGE---CGGTAYVTFSNAYALETAV-LLSGATIVDQPVCII   76 (242)
Q Consensus         1 M~~~~~tV~VsNLs~~~TE~dLrefFs~~G~I~~V~l~~~~~---~~~~AfV~F~~~~aA~tAl-~Lng~~l~g~~I~V~   76 (242)
                      |++..+||||+|||+++|+++|+++|+.||+|.+|.++.+..   ..++|||+|.++++|+.|+ .|||..|+|++|.|.
T Consensus         1 ma~~~~tlfV~nLp~~~te~~l~~~F~~~G~i~~v~i~~d~~~~~~kg~afV~f~~~~~A~~ai~~l~~~~i~g~~l~v~   80 (89)
T d2cqba1           1 MATTKRVLYVGGLAEEVDDKVLHAAFIPFGDITDIQIPLDYETEKHRGFAFVEFELAEDAAAAIDNMNESELFGRTIRVN   80 (89)
T ss_dssp             SCCCCSCEEEESCCSSCCHHHHHHHHTTTSCCCCEECCCCSSSCCCSSEEEECCSSHHHHHHHHHHHTTEEETTEEEEEE
T ss_pred             CCCCCcEEEEeCCCCcCCHHHHHHHHhhCCeEEecccccccccccccceeEEEECCHHHHHHHHHHcCCCEECCEEEEEE
Confidence            888899999999999999999999999999999999987643   3469999999999999995 799999999999999


Q ss_pred             ecC
Q 026156           77 RWG   79 (242)
Q Consensus        77 ~a~   79 (242)
                      .+.
T Consensus        81 ~a~   83 (89)
T d2cqba1          81 LAK   83 (89)
T ss_dssp             ECC
T ss_pred             EeC
Confidence            764

>d1l3ka1 d.58.7.1 (A:8-91) Nuclear ribonucleoprotein A1 (RNP A1, UP1) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: Nuclear ribonucleoprotein A1 (RNP A1, UP1)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.72  E-value=1.4e-17  Score=122.03  Aligned_cols=74  Identities=18%  Similarity=0.210  Sum_probs=68.4

Q ss_pred             CcEEEEeCCCCCCCHHHHHHHhccCCCceEEEEeecCC---cCceEEEEecCHHHHHHHHhcCCCeecCeeEEEEec
Q 026156            5 GYVAEVVGLSPNATEKDIHEFFSHCGDPVHVEIIRSGE---CGGTAYVTFSNAYALETAVLLSGATIVDQPVCIIRW   78 (242)
Q Consensus         5 ~~tV~VsNLs~~~TE~dLrefFs~~G~I~~V~l~~~~~---~~~~AfV~F~~~~aA~tAl~Lng~~l~g~~I~V~~a   78 (242)
                      .++|||+|||+++|+++|+++|+.||+|.+|+|+.+..   +.++|||+|.++++++.|+.++|..|.|+.|.|.++
T Consensus         6 ~~~lfV~nlp~~~te~~l~~~F~~~G~i~~v~i~~d~~tg~~kG~afV~f~~~~~a~~ai~~~~~~i~Gr~i~V~~A   82 (84)
T d1l3ka1           6 LRKLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTYATVEEVDAAMNARPHKVDGRVVEPKRA   82 (84)
T ss_dssp             GGEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHTCSCEETTEECEEEEC
T ss_pred             CcEEEEECCCCCCCHHHHHHHHHhhccccceeecccccCCCcccEEEEEEcCHHHHHHHHHhCCCEECCEEEEEEee
Confidence            37999999999999999999999999999999998754   346999999999999999989999999999999876

>d1b7fa1 d.58.7.1 (A:123-204) Sex-lethal protein {Drosophila melanogaster [TaxId: 7227]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: Sex-lethal protein
species: Drosophila melanogaster [TaxId: 7227]

Probab=99.72  E-value=1.5e-17  Score=120.35  Aligned_cols=75  Identities=20%  Similarity=0.276  Sum_probs=68.3

Q ss_pred             CcEEEEeCCCCCCCHHHHHHHhccCCCceEEEEeecCC---cCceEEEEecCHHHHHHHH-hcCCCeecCeeEEEEecC
Q 026156            5 GYVAEVVGLSPNATEKDIHEFFSHCGDPVHVEIIRSGE---CGGTAYVTFSNAYALETAV-LLSGATIVDQPVCIIRWG   79 (242)
Q Consensus         5 ~~tV~VsNLs~~~TE~dLrefFs~~G~I~~V~l~~~~~---~~~~AfV~F~~~~aA~tAl-~Lng~~l~g~~I~V~~a~   79 (242)
                      +++|||+|||+.+|+++|+++|+.||+|.++.+.++..   ..++|||+|.++++|+.|+ .|||..|+|+.|+|..+.
T Consensus         2 ~t~l~V~nLp~~~t~~~l~~~F~~~G~v~~~~i~~~~~~g~~~g~afV~f~~~~~A~~ai~~lng~~~~g~~l~v~~a~   80 (82)
T d1b7fa1           2 NTNLIVNYLPQDMTDRELYALFRAIGPINTCRIMRDYKTGYSYGYAFVDFTSEMDSQRAIKVLNGITVRNKRLKVSYAR   80 (82)
T ss_dssp             CSEEEEECCCTTCCHHHHHHHHHTTSCEEEEECCEETTTTEECSEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECC
T ss_pred             CCEEEEeCCCCCCCHHHHHHHHHHhCCcceeeeeeecccCCccccceEEECCHHHHHHHHHHhCCCEECCEEEEEEEcC
Confidence            46899999999999999999999999999999987643   3469999999999999995 799999999999999764

>d1hd0a_ d.58.7.1 (A:) Heterogeneous nuclear ribonucleoprotein d0 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: Heterogeneous nuclear ribonucleoprotein d0
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.71  E-value=8.4e-18  Score=120.61  Aligned_cols=72  Identities=19%  Similarity=0.263  Sum_probs=66.1

Q ss_pred             EEEEeCCCCCCCHHHHHHHhccCCCceEEEEeecCC---cCceEEEEecCHHHHHHHHhcCCCeecCeeEEEEec
Q 026156            7 VAEVVGLSPNATEKDIHEFFSHCGDPVHVEIIRSGE---CGGTAYVTFSNAYALETAVLLSGATIVDQPVCIIRW   78 (242)
Q Consensus         7 tV~VsNLs~~~TE~dLrefFs~~G~I~~V~l~~~~~---~~~~AfV~F~~~~aA~tAl~Lng~~l~g~~I~V~~a   78 (242)
                      .|||+|||+++||++|+++|+.||+|.++.|+.+..   ..++|||+|.++++|+.|+.+++..|+|+.|.|.++
T Consensus         1 klfV~nl~~~~te~~l~~~F~~~G~i~~~~i~~d~~t~~~kg~afV~f~~~~~a~~Al~~~~~~l~Gr~i~V~rA   75 (75)
T d1hd0a_           1 KMFIGGLSWDTTKKDLKDYFSKFGEVVDCTLKLDPITGRSRGFGFVLFKESESVDKVMDQKEHKLNGKVIDPKRA   75 (75)
T ss_dssp             CEEEECCCTTCCHHHHHHHHHTTSCEEEEECCCBTTTTBCCSEEEEEESSHHHHHHHHHTCCCCBTTBCCEECCC
T ss_pred             CEEEeCCCCcCCHHHHHHHHHhhccccccccccCCCCCCcCceEEEEECCHHHHHHHHhcCCCEECCCEEEeeEC
Confidence            489999999999999999999999999999998754   347999999999999999989999999999999753

>d1uawa_ d.58.7.1 (A:) Musashi-1 {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: Musashi-1
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.71  E-value=5.1e-18  Score=122.69  Aligned_cols=73  Identities=18%  Similarity=0.247  Sum_probs=67.4

Q ss_pred             cEEEEeCCCCCCCHHHHHHHhccCCCceEEEEeecCC---cCceEEEEecCHHHHHHHHhcCCCeecCeeEEEEec
Q 026156            6 YVAEVVGLSPNATEKDIHEFFSHCGDPVHVEIIRSGE---CGGTAYVTFSNAYALETAVLLSGATIVDQPVCIIRW   78 (242)
Q Consensus         6 ~tV~VsNLs~~~TE~dLrefFs~~G~I~~V~l~~~~~---~~~~AfV~F~~~~aA~tAl~Lng~~l~g~~I~V~~a   78 (242)
                      ++|||+|||+++||++|+++|+.||+|.+++|+.+..   +.++|||+|.++++++.|+.+|++.|+|+.|.|..+
T Consensus         1 cklfV~nLp~~~te~~l~~~F~~~G~i~~v~i~~d~~tg~~kG~aFV~f~~~~~a~~al~~~~~~i~Gr~i~V~~A   76 (77)
T d1uawa_           1 CKMFIGGLSWQTTQEGLREYFGQFGEVKECLVMRDPLTKRSRGFGFVTFMDQAGVDKVLAQSRHELDSKTIDPKVA   76 (77)
T ss_dssp             CCEEEESCCSSCCSHHHHHHHTTTSCCCCEEEECCCCSSSCSSEEEECCCCTTHHHHHHHTTTCCCSSCCCEEEEC
T ss_pred             CEEEEeCCCCcCCHHHHHHHHHHhCCcceeeeecccCCCCccceEEEEECCHHHHHHHHHcCCCEECCeEEEEEEC
Confidence            5799999999999999999999999999999997754   347999999999999999989999999999999864

>d1fxla1 d.58.7.1 (A:37-118) Hu antigen D (Hud) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: Hu antigen D (Hud)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.71  E-value=3.6e-17  Score=118.17  Aligned_cols=74  Identities=18%  Similarity=0.253  Sum_probs=67.3

Q ss_pred             cEEEEeCCCCCCCHHHHHHHhccCCCceEEEEeecCC---cCceEEEEecCHHHHHHHH-hcCCCeecCeeEEEEecC
Q 026156            6 YVAEVVGLSPNATEKDIHEFFSHCGDPVHVEIIRSGE---CGGTAYVTFSNAYALETAV-LLSGATIVDQPVCIIRWG   79 (242)
Q Consensus         6 ~tV~VsNLs~~~TE~dLrefFs~~G~I~~V~l~~~~~---~~~~AfV~F~~~~aA~tAl-~Lng~~l~g~~I~V~~a~   79 (242)
                      ++|||+|||++++|++|+++|+.||+|.+|++.++..   ..++|||+|.++++|+.|+ .|||..|.|+.|.|..+.
T Consensus         3 t~l~V~nLp~~~te~~l~~~f~~~G~v~~v~i~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~g~~~~g~~l~v~~Ak   80 (82)
T d1fxla1           3 TNLIVNYLPQNMTQEEFRSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKAINTLNGLRLQTKTIKVSYAR   80 (82)
T ss_dssp             SEEEEESCCTTCCHHHHHHHHHTTSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECC
T ss_pred             CEEEEECCCCCCCHHHHHHHHHHhCCcccccceeeccCCCceeeEEEEECCHHHHHHHHHHhCCCEECCEEEEEEEee
Confidence            5799999999999999999999999999999997643   2369999999999999995 799999999999998764

>d2cqia1 d.58.7.1 (A:1-90) Nucleolysin TIAR {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: Nucleolysin TIAR
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.70  E-value=3.9e-17  Score=120.64  Aligned_cols=75  Identities=21%  Similarity=0.197  Sum_probs=68.5

Q ss_pred             CcEEEEeCCCCCCCHHHHHHHhccCCCceEEEEeecCC-cCceEEEEecCHHHHHHHH-hcCCCeecCeeEEEEecC
Q 026156            5 GYVAEVVGLSPNATEKDIHEFFSHCGDPVHVEIIRSGE-CGGTAYVTFSNAYALETAV-LLSGATIVDQPVCIIRWG   79 (242)
Q Consensus         5 ~~tV~VsNLs~~~TE~dLrefFs~~G~I~~V~l~~~~~-~~~~AfV~F~~~~aA~tAl-~Lng~~l~g~~I~V~~a~   79 (242)
                      .+||||+|||+++||++|+++|+.||+|.+|.+..+.. ..++|||+|.+.++|..|+ .|||..|.|+.|+|..+.
T Consensus         8 ~~tl~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~d~~~~~~~afV~f~~~~~A~~A~~~l~~~~~~g~~i~v~~a~   84 (90)
T d2cqia1           8 PRTLYVGNLSRDVTEVLILQLFSQIGPCKSCKMITEHTSNDPYCFVEFYEHRDAAAALAAMNGRKILGKEVKVNWAT   84 (90)
T ss_dssp             CCEEEEESCCTTCCHHHHHHHHHHHSCEEEEEEECCCCSSCCEEEEEESSHHHHHHHHHHHTTEEETTEEEEEEECC
T ss_pred             CCEEEEECCCCCCCHHHHHHHHHhcCCceeeeeecccCccceeeEEEECCHHHHHHHHHHcCCCEECCEEEEEEEcC
Confidence            47999999999999999999999999999999987754 3469999999999999995 799999999999998764

>d1cvja2 d.58.7.1 (A:91-179) Poly(A)-binding protein {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: Poly(A)-binding protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.70  E-value=2.8e-17  Score=121.22  Aligned_cols=77  Identities=21%  Similarity=0.307  Sum_probs=70.0

Q ss_pred             CCcEEEEeCCCCCCCHHHHHHHhccCCCceEEEEeecCCc-CceEEEEecCHHHHHHHH-hcCCCeecCeeEEEEecCC
Q 026156            4 GGYVAEVVGLSPNATEKDIHEFFSHCGDPVHVEIIRSGEC-GGTAYVTFSNAYALETAV-LLSGATIVDQPVCIIRWGE   80 (242)
Q Consensus         4 ~~~tV~VsNLs~~~TE~dLrefFs~~G~I~~V~l~~~~~~-~~~AfV~F~~~~aA~tAl-~Lng~~l~g~~I~V~~a~~   80 (242)
                      +..+|||+|||+.+|+++|+++|+.||.|.++.++.+.+. .+||||+|.++++|+.|+ .|||..|+|+.|.|..+.+
T Consensus         7 ~~~~l~V~nLp~~~t~~~l~~~F~~~G~v~~~~i~~~~~~~kg~afV~f~~~~~A~~Ai~~l~g~~~~g~~i~V~~a~~   85 (89)
T d1cvja2           7 GVGNIFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENGSKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFVGRFKS   85 (89)
T ss_dssp             TTTEEEEESCCSSCCHHHHHHHHHTTSCEEEEEECCBTTBCCSCEEEEESCHHHHHHHTTSSSEEEETTEEEEEEECCC
T ss_pred             CCCEEEEeCCCCCCCHHHHHHHHHhcCCceEEEEEeecCCCcceeEEEECCHHHHHHHHHHcCCCEECCEEEEEEECCC
Confidence            4468999999999999999999999999999999987553 479999999999999996 7999999999999998753

>d1x4ba1 d.58.7.1 (A:8-110) Heterogeneous nuclear ribonucleoproteins A2/B1 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: Heterogeneous nuclear ribonucleoproteins A2/B1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.70  E-value=3.8e-17  Score=124.36  Aligned_cols=74  Identities=22%  Similarity=0.268  Sum_probs=68.5

Q ss_pred             cEEEEeCCCCCCCHHHHHHHhccCCCceEEEEeecCC---cCceEEEEecCHHHHHHHHhcCCCeecCeeEEEEecC
Q 026156            6 YVAEVVGLSPNATEKDIHEFFSHCGDPVHVEIIRSGE---CGGTAYVTFSNAYALETAVLLSGATIVDQPVCIIRWG   79 (242)
Q Consensus         6 ~tV~VsNLs~~~TE~dLrefFs~~G~I~~V~l~~~~~---~~~~AfV~F~~~~aA~tAl~Lng~~l~g~~I~V~~a~   79 (242)
                      ++|||+|||+.+|+++|+++|+.||.|.++.|..+..   ..+||||+|.++++|..|+.+||..|.|+.|.|.++.
T Consensus        21 ~~lfVgnLp~~~te~~L~~~F~~~G~i~~~~i~~d~~~~~~kg~aFV~f~~~~~a~~al~~~~~~l~G~~i~V~~a~   97 (103)
T d1x4ba1          21 RKLFIGGLSFETTEESLRNYYEQWGKLTDCVVMRDPASKRSRGFGFVTFSSMAEVDAAMAARPHSIDGRVVEPKRAV   97 (103)
T ss_dssp             TEEEEECCTTCCCHHHHHHHHTSSCCCSEEEEECCTTTSSCCSEEEEECSSHHHHHHHHTSCSEEETTEEEEEECCS
T ss_pred             CEEEEeCCCCcCCHHHHHHHHHhhCcccceeecccccCCCccCeEEEEECCHHHHHHHHHhCCCeECCEEEEEEECc
Confidence            6899999999999999999999999999999997743   3479999999999999999999999999999998764

>d1h2vz_ d.58.7.1 (Z:) CBP20, 20KDa nuclear cap-binding protein {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: CBP20, 20KDa nuclear cap-binding protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.70  E-value=6.2e-17  Score=120.51  Aligned_cols=78  Identities=22%  Similarity=0.190  Sum_probs=69.8

Q ss_pred             CCCCcEEEEeCCCCCCCHHHHHHHhccCCCceEEEEeecCCc---CceEEEEecCHHHHHHHH-hcCCCeecCeeEEEEe
Q 026156            2 YAGGYVAEVVGLSPNATEKDIHEFFSHCGDPVHVEIIRSGEC---GGTAYVTFSNAYALETAV-LLSGATIVDQPVCIIR   77 (242)
Q Consensus         2 ~~~~~tV~VsNLs~~~TE~dLrefFs~~G~I~~V~l~~~~~~---~~~AfV~F~~~~aA~tAl-~Lng~~l~g~~I~V~~   77 (242)
                      ....+||||+|||+++|+++|+++|+.||+|.+|.++.+..+   .++|||+|.++++|..|+ .|||..|+|++|.|.-
T Consensus         4 ~~~s~tlfV~nlp~~~te~~l~~~F~~~G~i~~v~i~~~~~~~~~kg~afV~f~~~~~A~~Ai~~l~g~~~~gr~i~V~~   83 (93)
T d1h2vz_           4 LKKSCTLYVGNLSFYTTEEQIYELFSKSGDIKKIIMGLDKMKKTACGFCFVEYYSRADAENAMRYINGTRLDDRIIRTDW   83 (93)
T ss_dssp             TTTCCEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHTTTSEETTEECEEEE
T ss_pred             cCCCCEEEEeCCCCCCCHHHHHHHHHHHCCcceeccccccccccccceEEEEECCHHHHHHHHHHhCCCEECCEEEEEEE
Confidence            445689999999999999999999999999999999987542   359999999999999996 7999999999999986


Q ss_pred             cC
Q 026156           78 WG   79 (242)
Q Consensus        78 a~   79 (242)
                      +.
T Consensus        84 a~   85 (93)
T d1h2vz_          84 DA   85 (93)
T ss_dssp             ES
T ss_pred             cC
Confidence            53

>d2cq4a1 d.58.7.1 (A:132-232) RNA binding protein 23 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: RNA binding protein 23
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.70  E-value=2.4e-17  Score=124.99  Aligned_cols=73  Identities=25%  Similarity=0.419  Sum_probs=68.1

Q ss_pred             cEEEEeCCCCCCCHHHHHHHhccCCCceEEEEeecCC---cCceEEEEecCHHHHHHHHhcCCCeecCeeEEEEec
Q 026156            6 YVAEVVGLSPNATEKDIHEFFSHCGDPVHVEIIRSGE---CGGTAYVTFSNAYALETAVLLSGATIVDQPVCIIRW   78 (242)
Q Consensus         6 ~tV~VsNLs~~~TE~dLrefFs~~G~I~~V~l~~~~~---~~~~AfV~F~~~~aA~tAl~Lng~~l~g~~I~V~~a   78 (242)
                      +||||+|||++++|++|++||+.||+|.+|+|+++..   ..+||||+|.++++|..|+.|||..|+|+.|.|.++
T Consensus        19 ~tifV~nL~~~~te~~l~~~F~~~G~V~~v~i~~d~~tg~~kG~afV~F~~~e~a~~A~~l~g~~~~G~~l~V~~a   94 (101)
T d2cq4a1          19 RTVFCMQLAARIRPRDLEDFFSAVGKVRDVRIISDRNSRRSKGIAYVEFCEIQSVPLAIGLTGQRLLGVPIIVQAS   94 (101)
T ss_dssp             TEEEEESCCTTCCHHHHHHHHTTTSCEEEEEECCSCCSSSCCCCEEEEESCGGGHHHHHHHTTEEETTEEEEEEEH
T ss_pred             CEEEEECCCCCCCHHHHHHHHcCCCeEEEEEeeecCCCccccceEEEEECCHHHHHHHHHHCCCEECCEEEEEEEC
Confidence            6899999999999999999999999999999998743   357999999999999999999999999999999875

>d2msta_ d.58.7.1 (A:) Neural RNA-binding protein Musashi-1 {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: Neural RNA-binding protein Musashi-1
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.70  E-value=1.4e-17  Score=118.28  Aligned_cols=72  Identities=22%  Similarity=0.240  Sum_probs=65.9

Q ss_pred             EEEEeCCCCCCCHHHHHHHhccCCCceEEEEeecCC---cCceEEEEecCHHHHHHHHhcCCCeecCeeEEEEec
Q 026156            7 VAEVVGLSPNATEKDIHEFFSHCGDPVHVEIIRSGE---CGGTAYVTFSNAYALETAVLLSGATIVDQPVCIIRW   78 (242)
Q Consensus         7 tV~VsNLs~~~TE~dLrefFs~~G~I~~V~l~~~~~---~~~~AfV~F~~~~aA~tAl~Lng~~l~g~~I~V~~a   78 (242)
                      .|||+|||+++||++|++||+.||.|..+.+..++.   ..++|||+|.++++++.|+.+||..|+|++|+|..+
T Consensus         1 rlfV~nLp~~~te~~l~~~F~~~G~i~~~~~~~~~~~~~~~~~afV~F~~~~~a~~al~~~~~~l~gr~i~V~~A   75 (75)
T d2msta_           1 KIFVGGLSVNTTVEDVKHYFEQFGKVDDAMLMFDKTTNRHRGFGFVTFESEDIVEKVCEIHFHEINNKMVECKKA   75 (75)
T ss_dssp             CEEEECCCSSCCHHHHHHHHHTTSCCSEECCBCCTTCTTSCCEEEEECSCHHHHHHHHHCSSCCBTTBCCEEEEC
T ss_pred             CEEEeCCCCCCCHHHHHHHHHHhCCcceeeeeeeccccccCceeEEEECCHHHHHHHHhcCCCEECCeEEEEEEC
Confidence            489999999999999999999999999999986643   347999999999999999999999999999999864

>d2f9da1 d.58.7.1 (A:12-125) Pre-mRNA branch site protein p14 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: Pre-mRNA branch site protein p14
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.69  E-value=5.1e-17  Score=124.37  Aligned_cols=74  Identities=19%  Similarity=0.385  Sum_probs=69.4

Q ss_pred             CcEEEEeCCCCCCCHHHHHHHhccCCCceEEEEeecCCcCceEEEEecCHHHHHHHH-hcCCCeecCeeEEEEec
Q 026156            5 GYVAEVVGLSPNATEKDIHEFFSHCGDPVHVEIIRSGECGGTAYVTFSNAYALETAV-LLSGATIVDQPVCIIRW   78 (242)
Q Consensus         5 ~~tV~VsNLs~~~TE~dLrefFs~~G~I~~V~l~~~~~~~~~AfV~F~~~~aA~tAl-~Lng~~l~g~~I~V~~a   78 (242)
                      .++|||+|||+.+|+++|+++|+.||.|.+|++..++.+.++|||+|.+.++|..|+ .|||..|+|+.|.|..+
T Consensus         7 ~r~l~V~nLp~~~te~~l~~~F~~~G~v~~i~~~~~~~~kG~afV~f~~~~~A~~Ai~~l~g~~~~gr~l~V~~a   81 (114)
T d2f9da1           7 NRILYIRNLPYKITAEEMYDIFGKYGPIRQIRVGNTPETRGTAYVVYEDIFDAKNACDHLSGFNVCNRYLVVLYY   81 (114)
T ss_dssp             CSEEEEESCCTTCCHHHHHHHHHTTSCEEEEEEECSTTTTTEEEEEESSHHHHHHHHHHHTTCEETTEECEEEEC
T ss_pred             CCEEEEECCCCCCCHHHHHHHHhhcCCeEeecccccCCcCCeEEEEECCHHHHHHHHHHhCCCEECCEEEEEEEc
Confidence            379999999999999999999999999999999987766789999999999999995 89999999999999865

>d2ghpa3 d.58.7.1 (A:206-291) U4/U6 snRNA-associated-splicing factor PRP24 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: U4/U6 snRNA-associated-splicing factor PRP24
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.69  E-value=2.2e-17  Score=121.15  Aligned_cols=77  Identities=18%  Similarity=0.219  Sum_probs=66.9

Q ss_pred             CCcEEEEeCCCCCCC-HHHHHHHhccCCCceEEEEeecC-C---cCceEEEEecCHHHHHHHHhcCCCeecCeeEEEEec
Q 026156            4 GGYVAEVVGLSPNAT-EKDIHEFFSHCGDPVHVEIIRSG-E---CGGTAYVTFSNAYALETAVLLSGATIVDQPVCIIRW   78 (242)
Q Consensus         4 ~~~tV~VsNLs~~~T-E~dLrefFs~~G~I~~V~l~~~~-~---~~~~AfV~F~~~~aA~tAl~Lng~~l~g~~I~V~~a   78 (242)
                      ..++|||+|||+++| |++|+++|+.||+|++|+|..+. +   ..++|||+|.+.++|..|+.|||..|+|+.|.|..+
T Consensus         3 e~~~l~V~nLp~~~t~ed~l~~~F~~~G~i~~v~i~~~~~~~~~~kg~afV~f~~~~~a~~Al~~n~~~~~gr~l~V~~a   82 (86)
T d2ghpa3           3 EGREIMIRNLSTELLDENLLRESFEGFGSIEKINIPAGQKEHSFNNCCAFMVFENKDSAERALQMNRSLLGNREISVSLA   82 (86)
T ss_dssp             TTTEEEEEEECTTTCCHHHHHHHHGGGSCEEEEECCSCCC---CCCEEEEEEESSHHHHHHHGGGTTEEETTEEEEEEEC
T ss_pred             CCCEEEEECCCCCcccHHHHHHHHHhhhhccceeeecccCCccccceeeeEEECCHHHHHHHHhcCCCEECCEEEEEEEc
Confidence            458999999999986 56699999999999999987542 2   346999999999999999989999999999999976


Q ss_pred             CC
Q 026156           79 GE   80 (242)
Q Consensus        79 ~~   80 (242)
                      .+
T Consensus        83 ~~   84 (86)
T d2ghpa3          83 DK   84 (86)
T ss_dssp             CC
T ss_pred             CC
Confidence            53

>d1whwa_ d.58.7.1 (A:) Probable RNA-binding protein 19, Rbm19 {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: Probable RNA-binding protein 19, Rbm19
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.69  E-value=7.4e-17  Score=120.97  Aligned_cols=79  Identities=20%  Similarity=0.164  Sum_probs=70.4

Q ss_pred             CCCcEEEEeCCCCCCCHHHHHHHhccCCCceEEEEeecCC---cCceEEEEecCHHHHHHHH-hcCCCeecCeeEEEEec
Q 026156            3 AGGYVAEVVGLSPNATEKDIHEFFSHCGDPVHVEIIRSGE---CGGTAYVTFSNAYALETAV-LLSGATIVDQPVCIIRW   78 (242)
Q Consensus         3 ~~~~tV~VsNLs~~~TE~dLrefFs~~G~I~~V~l~~~~~---~~~~AfV~F~~~~aA~tAl-~Lng~~l~g~~I~V~~a   78 (242)
                      +..++|||+|||+.+++++|+++|+.||.|.+|.|+.+..   ..+||||+|.+++.|+.|+ .|||..|+|+.|+|.++
T Consensus         6 ~~~~~lfV~nL~~~~t~~~l~~~F~~~g~v~~v~i~~d~~tg~~~g~afV~f~~~~~a~~A~~~l~g~~~~gr~i~V~~a   85 (99)
T d1whwa_           6 SGSGRLFVRNLSYTSSEEDLEKLFSAYGPLSELHYPIDSLTKKPKGFAFVTFMFPEHAVKAYAEVDGQVFQGRMLHVLPS   85 (99)
T ss_dssp             CSCEEEEEECCCTTCCHHHHHHHHHTTSCEEEEECCCCTTTCCCCSEEEEEESSHHHHHHHHHHTTTEESSSCEEEEEEC
T ss_pred             CCCCEEEEECCCCcCCHHHHHHHHHhcCCceeeeecccccccccCcceEEEECCHHHHHHHHHHcCCCEECCEEEEEEEC
Confidence            3457899999999999999999999999999999987643   3469999999999999995 79999999999999987


Q ss_pred             CCC
Q 026156           79 GEY   81 (242)
Q Consensus        79 ~~~   81 (242)
                      ...
T Consensus        86 ~~~   88 (99)
T d1whwa_          86 TIK   88 (99)
T ss_dssp             CCC
T ss_pred             CCC
Confidence            654

>d2cq3a1 d.58.7.1 (A:110-202) RNA-binding protein 9 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: RNA-binding protein 9
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.69  E-value=1.2e-16  Score=118.75  Aligned_cols=77  Identities=21%  Similarity=0.287  Sum_probs=70.2

Q ss_pred             CCcEEEEeCCCCCCCHHHHHHHhccCCCceEEEEeecCC-cCceEEEEecCHHHHHHHH-hcCCCeecCeeEEEEecCC
Q 026156            4 GGYVAEVVGLSPNATEKDIHEFFSHCGDPVHVEIIRSGE-CGGTAYVTFSNAYALETAV-LLSGATIVDQPVCIIRWGE   80 (242)
Q Consensus         4 ~~~tV~VsNLs~~~TE~dLrefFs~~G~I~~V~l~~~~~-~~~~AfV~F~~~~aA~tAl-~Lng~~l~g~~I~V~~a~~   80 (242)
                      ..++|||+|||+.+++++|+++|+.||+|.+|.+..+.. ..++|||+|.+++.|..|+ .|||..|+|+.|.|..+.+
T Consensus        10 ~~~~l~v~nLp~~~t~~~L~~~F~~~G~v~~v~~~~~~~~~kg~afV~f~~~~~a~~Ai~~l~~~~~~g~~l~V~~A~~   88 (93)
T d2cq3a1          10 TPKRLHVSNIPFRFRDPDLRQMFGQFGKILDVEIIFNERGSKGFGFVTFENSADADRAREKLHGTVVEGRKIEVNNATA   88 (93)
T ss_dssp             CCCEEEEESCCTTCCHHHHHHHGGGTSCEEEEEEECCTTTTCCEEEEEESCHHHHHHHHHHHTTCEETTEECEEEECCS
T ss_pred             CCCEEEEECCCCCCCHHHHHHHHhhcceeeeccccccccCCcceeEEEECCHHHHHHHHHHcCCCEECCEEEEEEecCc
Confidence            457999999999999999999999999999999997754 3579999999999999995 7999999999999998754

>d1zh5a2 d.58.7.1 (A:105-189) Lupus LA protein {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: Lupus LA protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.69  E-value=9.7e-17  Score=117.66  Aligned_cols=77  Identities=19%  Similarity=0.334  Sum_probs=69.3

Q ss_pred             CcEEEEeCCCCCCCHHHHHHHhccCCCceEEEEeecCC--cCceEEEEecCHHHHHHHHhcCCCeecCeeEEEEecCCC
Q 026156            5 GYVAEVVGLSPNATEKDIHEFFSHCGDPVHVEIIRSGE--CGGTAYVTFSNAYALETAVLLSGATIVDQPVCIIRWGEY   81 (242)
Q Consensus         5 ~~tV~VsNLs~~~TE~dLrefFs~~G~I~~V~l~~~~~--~~~~AfV~F~~~~aA~tAl~Lng~~l~g~~I~V~~a~~~   81 (242)
                      .++|||+|||+++|+++|++||+.||+|.+|.|.++..  ..++|||+|.++++|..|+.++|..+.|+.|.|....+|
T Consensus         6 ~rtvfV~nlp~~~te~~l~~~F~~~G~v~~v~l~~~~~~~~kG~afV~f~~~e~a~~al~~~~~~~~g~~l~v~~~~dy   84 (85)
T d1zh5a2           6 NRSVYIKGFPTDATLDDIKEWLEDKGQVLNIQMRRTLHKAFKGSIFVVFDSIESAKKFVETPGQKYKETDLLILFKDDY   84 (85)
T ss_dssp             TTEEEEECCCTTCCHHHHHHHHTTSCCEEEEEEEECTTCCEEEEEEEEESCHHHHHHHHTCCCCEETTEECEEEEGGGC
T ss_pred             cCEEEEECCCCCCCHHHHHHHHHHhcccccceeeeeccCCcceEEEEEEcCHHHHHHHHHHCCCEECCEEEEEEEcCCC
Confidence            47999999999999999999999999999999987643  246999999999999999999999999999999865443

>d2cpfa1 d.58.7.1 (A:362-446) Probable RNA-binding protein 19, Rbm19 {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: Probable RNA-binding protein 19, Rbm19
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.68  E-value=9.2e-17  Score=117.00  Aligned_cols=72  Identities=18%  Similarity=0.213  Sum_probs=65.2

Q ss_pred             EEEeCCCCCCCHHHHHHHhccCCCceEEEEeecCCc------CceEEEEecCHHHHHHHH-hcCCCeecCeeEEEEecC
Q 026156            8 AEVVGLSPNATEKDIHEFFSHCGDPVHVEIIRSGEC------GGTAYVTFSNAYALETAV-LLSGATIVDQPVCIIRWG   79 (242)
Q Consensus         8 V~VsNLs~~~TE~dLrefFs~~G~I~~V~l~~~~~~------~~~AfV~F~~~~aA~tAl-~Lng~~l~g~~I~V~~a~   79 (242)
                      |||+|||+++|+++|+++|+.||+|.+|.|..+..+      .++|||+|.++++|..|+ .|||..|+|+.|.|..+.
T Consensus         1 LfV~nLp~~~t~~~l~~~F~~~G~v~~v~i~~~~~~~~~~~~kG~afV~f~~~~~A~~A~~~~~~~~~~g~~i~V~~a~   79 (85)
T d2cpfa1           1 LFIKNLNFSTTEETLKGVFSKVGAIKSCTISKKKNKAGVLLSMGFGFVEYKKPEQAQKALKQLQGHTVDGHKLEVRISE   79 (85)
T ss_dssp             EEEESCCTTCCHHHHHHHHHTTSCEEEEEEEEEECTTCCEEEEEEEEEEESSHHHHHHHHHHSTTCEETTEECEEECSS
T ss_pred             CEEcCCCCCCCHHHHHHHHHHhCCccccceecccccccccccceEEEEEECCHHHHHHHHHHhCCCEECCEEEEEEECC
Confidence            799999999999999999999999999999876332      358999999999999995 899999999999998764

>d1wf0a_ d.58.7.1 (A:) TAR DNA-binding protein 43, TDP-43 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: TAR DNA-binding protein 43, TDP-43
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.68  E-value=4.6e-17  Score=119.92  Aligned_cols=75  Identities=25%  Similarity=0.267  Sum_probs=66.9

Q ss_pred             CCCcEEEEeCCCCCCCHHHHHHHhccCCCceEEEEeecCCcCceEEEEecCHHHHHHHHhcCCCeecCeeEEEEecCC
Q 026156            3 AGGYVAEVVGLSPNATEKDIHEFFSHCGDPVHVEIIRSGECGGTAYVTFSNAYALETAVLLSGATIVDQPVCIIRWGE   80 (242)
Q Consensus         3 ~~~~tV~VsNLs~~~TE~dLrefFs~~G~I~~V~l~~~~~~~~~AfV~F~~~~aA~tAl~Lng~~l~g~~I~V~~a~~   80 (242)
                      +..++|||+|||+.+||++|+++|+.||+|.+|++..+  ..+||||+|.++++|+.|+. ++..|+|++|.|..+.+
T Consensus         3 ~~s~~lfV~nLp~~~te~~L~~~F~~~G~v~~v~~~~~--~~gfafV~f~~~~~a~~a~~-~~~~i~g~~l~v~~a~~   77 (88)
T d1wf0a_           3 SGSSGVFVGRCTGDMTEDELREFFSQYGDVMDVFIPKP--FRAFAFVTFADDQIAQSLCG-EDLIIKGISVHISNAEP   77 (88)
T ss_dssp             SCCCEEEEESCCSSSCHHHHHHHSTTTSCCCEEECCSS--CCSCCEEECSCHHHHHHTTT-CEEEETTEEEEEECCCC
T ss_pred             CCCCEEEEeCCCCCCCHHHHHHHHHHcCCceEEEEeec--cCceEEEEECCHHHHHHHHh-CCCEECCEEeEEEeCCC
Confidence            45689999999999999999999999999999987643  34799999999999999975 89999999999997743

>d1cvja1 d.58.7.1 (A:11-90) Poly(A)-binding protein {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: Poly(A)-binding protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.68  E-value=9.8e-17  Score=116.02  Aligned_cols=72  Identities=29%  Similarity=0.315  Sum_probs=66.6

Q ss_pred             EEEEeCCCCCCCHHHHHHHhccCCCceEEEEeecCCc---CceEEEEecCHHHHHHHH-hcCCCeecCeeEEEEec
Q 026156            7 VAEVVGLSPNATEKDIHEFFSHCGDPVHVEIIRSGEC---GGTAYVTFSNAYALETAV-LLSGATIVDQPVCIIRW   78 (242)
Q Consensus         7 tV~VsNLs~~~TE~dLrefFs~~G~I~~V~l~~~~~~---~~~AfV~F~~~~aA~tAl-~Lng~~l~g~~I~V~~a   78 (242)
                      +|||+|||+.+||++|+++|+.||+|.+|+|+++..+   .++|||+|.++++|..|+ .|||..|.|++|+|..+
T Consensus         2 slfV~nL~~~~te~~l~~~F~~~G~i~~v~i~~d~~tg~~~g~aFV~f~~~~~a~~ai~~l~g~~~~gr~i~v~~a   77 (80)
T d1cvja1           2 SLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQPADAERALDTMNFDVIKGKPVRIMWS   77 (80)
T ss_dssp             EEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHTTSTTCEETTEECEEEEC
T ss_pred             EEEEeCCCCcCCHHHHHHHHHHhCCEeEEEEEecccccCCCCceEEEECCHHHHHHHHHHcCCCEECCEEEEEEEe
Confidence            6999999999999999999999999999999987542   369999999999999996 79999999999999865

>d2cqda1 d.58.7.1 (A:1-103) RNA-binding region containing protein 1 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: RNA-binding region containing protein 1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.68  E-value=2e-16  Score=119.79  Aligned_cols=77  Identities=19%  Similarity=0.144  Sum_probs=67.6

Q ss_pred             CcEEEEeCCCCCCCHHHHHHHhccCCCceEEEEeecCC---cCceEEEEecCHHHHHHHHhcCCCeecCeeEEEEecCCC
Q 026156            5 GYVAEVVGLSPNATEKDIHEFFSHCGDPVHVEIIRSGE---CGGTAYVTFSNAYALETAVLLSGATIVDQPVCIIRWGEY   81 (242)
Q Consensus         5 ~~tV~VsNLs~~~TE~dLrefFs~~G~I~~V~l~~~~~---~~~~AfV~F~~~~aA~tAl~Lng~~l~g~~I~V~~a~~~   81 (242)
                      .++|||+|||+.++|++|+++|+.||+|.+|.|+.+..   ..++|||+|.++++|+.|+...+..|+|+.|.|..+...
T Consensus        10 ~~~lfV~nLp~~~te~~l~~~F~~~G~i~~v~i~~d~~tg~~kg~afV~f~~~~~A~~Ai~~~~~~l~Gr~l~V~~a~~~   89 (103)
T d2cqda1          10 FTKIFVGGLPYHTTDASLRKYFEGFGDIEEAVVITDRQTGKSRGYGFVTMADRAAAERACKDPNPIIDGRKANVNLAYLG   89 (103)
T ss_dssp             SSEEEEECCCSSCCHHHHHHHHHTTSCEEEEEESCCSSSCCCCSEEEEEESSHHHHHHHHTCSSCEETTEECEEEESTTT
T ss_pred             CcEEEEeCCCCcCcHHHHHHHHhhcccccceeccccccccccCCeEEEEECCHHHHHHHHHHCCCcCCCEEEEEEEcCCC
Confidence            36799999999999999999999999999999997743   357999999999999999755556899999999876543

>d1no8a_ d.58.7.1 (A:) Nuclear factor Aly {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: Nuclear factor Aly
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.68  E-value=7e-17  Score=116.40  Aligned_cols=73  Identities=22%  Similarity=0.234  Sum_probs=66.5

Q ss_pred             EEEEeCCCCCCCHHHHHHHhccCCCceEEEEeecCC--cCceEEEEecCHHHHHHHH-hcCCCeecCeeEEEEecC
Q 026156            7 VAEVVGLSPNATEKDIHEFFSHCGDPVHVEIIRSGE--CGGTAYVTFSNAYALETAV-LLSGATIVDQPVCIIRWG   79 (242)
Q Consensus         7 tV~VsNLs~~~TE~dLrefFs~~G~I~~V~l~~~~~--~~~~AfV~F~~~~aA~tAl-~Lng~~l~g~~I~V~~a~   79 (242)
                      .|||+|||+++++++|+++|+.||+|.+|+|..+..  ..++|||+|.++++|..|+ .|||..|+|++|.|..+.
T Consensus         2 rl~V~nLp~~~~~~~l~~~F~~~G~v~~~~i~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~l~g~~l~V~~a~   77 (78)
T d1no8a_           2 KLLVSNLDFGVSDADIQELFAEFGTLKKAAVHYDRSGRSLGTADVHFERKADALKAMKQYNGVPLDGRPMNIQLVT   77 (78)
T ss_dssp             EEEEESCCTTCCHHHHHHHHHHHSCEEEEEESCSSCCCSCCEEEEEESCHHHHHHHHHHHTTCEETTEECEEEEEC
T ss_pred             EEEEECCCCCCCHHHHHHHHHHhCCCeEEEEEEeeccccceeEEEEECCHHHHHHHHHHhCCCEECCEEEEEEEee
Confidence            699999999999999999999999999999997633  3469999999999999995 799999999999998764

>d2ghpa1 d.58.7.1 (A:116-196) U4/U6 snRNA-associated-splicing factor PRP24 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: U4/U6 snRNA-associated-splicing factor PRP24
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.68  E-value=7.3e-17  Score=116.56  Aligned_cols=75  Identities=13%  Similarity=0.108  Sum_probs=65.4

Q ss_pred             CcEEEEeCCCCCCCHHHHHHHhccCCCceEEEEeecC---CcCceEEEEecCHHHHHHHH-hcCCCeecCeeEEEEecC
Q 026156            5 GYVAEVVGLSPNATEKDIHEFFSHCGDPVHVEIIRSG---ECGGTAYVTFSNAYALETAV-LLSGATIVDQPVCIIRWG   79 (242)
Q Consensus         5 ~~tV~VsNLs~~~TE~dLrefFs~~G~I~~V~l~~~~---~~~~~AfV~F~~~~aA~tAl-~Lng~~l~g~~I~V~~a~   79 (242)
                      ++||||+|||+++|+++|+++|+.||.|..+.++.+.   ...++|||+|.++++|..|+ .|||..|.|++|.|..+.
T Consensus         1 d~tl~v~nLp~~~t~~~l~~~f~~~G~v~~~~~~~~~~~~~~~g~afV~f~~~e~A~~Ai~~l~g~~~~g~~i~V~~a~   79 (81)
T d2ghpa1           1 ECTLWMTNFPPSYTQRNIRDLLQDINVVALSIRLPSLRFNTSRRFAYIDVTSKEDARYCVEKLNGLKIEGYTLVTKVSN   79 (81)
T ss_dssp             SCEEEEECCCTTCCHHHHHHHHHHTTCCCCEEECC-------CCEEEEECSSHHHHHHHHHHHTTCEETTEECEEEECC
T ss_pred             CcEEEEECCCCcCCHHHHHHHHHHhCcEEeeeeecccccccccceeEEEECCHHHHHHHHHHhCCCEECCEEEEEEEcc
Confidence            4799999999999999999999999999988776543   23479999999999999995 799999999999998764

>d1rk8a_ d.58.7.1 (A:) RNA-binding protein 8 {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: RNA-binding protein 8
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=99.67  E-value=1.4e-16  Score=117.27  Aligned_cols=75  Identities=23%  Similarity=0.318  Sum_probs=67.7

Q ss_pred             CCcEEEEeCCCCCCCHHHHHHHhccCCCceEEEEeecCCc---CceEEEEecCHHHHHHHH-hcCCCeecCeeEEEEec
Q 026156            4 GGYVAEVVGLSPNATEKDIHEFFSHCGDPVHVEIIRSGEC---GGTAYVTFSNAYALETAV-LLSGATIVDQPVCIIRW   78 (242)
Q Consensus         4 ~~~tV~VsNLs~~~TE~dLrefFs~~G~I~~V~l~~~~~~---~~~AfV~F~~~~aA~tAl-~Lng~~l~g~~I~V~~a   78 (242)
                      ..++|||+|||+.+|+++|+++|+.||+|.+|++..+..+   .++|||+|.++++|+.|+ .|||..|.|+.|.|..+
T Consensus         6 ~~~~l~V~nL~~~~t~~~l~~~F~~~G~i~~v~i~~d~~tg~~~g~afV~f~~~~~A~~A~~~lng~~l~g~~l~V~~a   84 (88)
T d1rk8a_           6 EGWILFVTSIHEEAQEDEIQEKFCDYGEIKNIHLNLDRRTGFSKGYALVEYETHKQALAAKEALNGAEIMGQTIQVDWC   84 (88)
T ss_dssp             -CEEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTSSEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEES
T ss_pred             CCCEEEEeCCCCCCCHHHHHHHHHHcCCcccccccccccccccccceeEEECCHHHHHHHHHHcCCCEECCEEEEEEEe
Confidence            4589999999999999999999999999999999987542   369999999999999995 79999999999999865

>d2u2fa_ d.58.7.1 (A:) Splicing factor U2AF 65 KDa subunit {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: Splicing factor U2AF 65 KDa subunit
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.67  E-value=8.6e-17  Score=117.85  Aligned_cols=74  Identities=15%  Similarity=0.285  Sum_probs=67.8

Q ss_pred             cEEEEeCCCCCCCHHHHHHHhccCCCceEEEEeecCC---cCceEEEEecCHHHHHHHH-hcCCCeecCeeEEEEecC
Q 026156            6 YVAEVVGLSPNATEKDIHEFFSHCGDPVHVEIIRSGE---CGGTAYVTFSNAYALETAV-LLSGATIVDQPVCIIRWG   79 (242)
Q Consensus         6 ~tV~VsNLs~~~TE~dLrefFs~~G~I~~V~l~~~~~---~~~~AfV~F~~~~aA~tAl-~Lng~~l~g~~I~V~~a~   79 (242)
                      ++|||+|||+.+||++|+++|+.||+|.+|+|++++.   ..++|||+|.++++|..|+ .|||..|+|++|.|..+.
T Consensus         2 ~rlfV~nlp~~~te~~l~~~F~~~G~v~~v~i~~d~~tg~~rg~aFV~f~~~~~A~~a~~~l~~~~l~g~~l~V~~A~   79 (85)
T d2u2fa_           2 HKLFIGGLPNYLNDDQVKELLTSFGPLKAFNLVKDSATGLSKGYAFCEYVDINVTDQAIAGLNGMQLGDKKLLVQRAS   79 (85)
T ss_dssp             CCEEEETCCSSCCSHHHHHHHTSSSCEEEEEEECCCSSSCCCCEEEEEESSSHHHHHHHHTSSSCCCSSSCCEEEECC
T ss_pred             CEEEEECCCCCCCHHHHHHHHHhcCccceEEeeccccccccceeEEEEECCHHHHHHHHHHhCCCEECCEEEEEEECC
Confidence            4799999999999999999999999999999997643   3479999999999999995 699999999999999774

>d2cqca1 d.58.7.1 (A:109-191) Arginine/serine-rich splicing factor 10 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: Arginine/serine-rich splicing factor 10
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.67  E-value=1.2e-16  Score=115.95  Aligned_cols=71  Identities=28%  Similarity=0.395  Sum_probs=65.0

Q ss_pred             CcEEEEeCCCCCCCHHHHHHHhccCCCceEEEEeecCC---cCceEEEEecCHHHHHHHH-hcCCCeecCeeEEE
Q 026156            5 GYVAEVVGLSPNATEKDIHEFFSHCGDPVHVEIIRSGE---CGGTAYVTFSNAYALETAV-LLSGATIVDQPVCI   75 (242)
Q Consensus         5 ~~tV~VsNLs~~~TE~dLrefFs~~G~I~~V~l~~~~~---~~~~AfV~F~~~~aA~tAl-~Lng~~l~g~~I~V   75 (242)
                      .++|||+|||+.+||++|+++|+.||+|.+|.|+.+..   ..++|||+|.++++|+.|+ .|||..|+|++|+|
T Consensus         9 ~~~l~V~nL~~~~te~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~Ai~~l~g~~~~gr~i~V   83 (83)
T d2cqca1           9 NCCLGVFGLSLYTTERDLREVFSKYGPIADVSIVYDQQSRRSRGFAFVYFENVDDAKEAKERANGMELDGRRIRV   83 (83)
T ss_dssp             GGCEEEESCCSSCCHHHHHHHHHTTSCEEEEEEEECSSSSSEEEEEEEEESSHHHHHHHHHHHTTEEETTEEEEE
T ss_pred             CCEEEEeCCCCCCCHHHHHHHHHHhCCCccccccccccccccccceEEEECCHHHHHHHHHHcCCCEECCEEeEC
Confidence            37899999999999999999999999999999997644   2369999999999999996 79999999999987

>d1x0fa1 d.58.7.1 (A:183-257) Nuclear ribonucleoprotein D0 (AUF1) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: Nuclear ribonucleoprotein D0 (AUF1)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.67  E-value=4.1e-17  Score=117.46  Aligned_cols=72  Identities=21%  Similarity=0.256  Sum_probs=65.8

Q ss_pred             EEEEeCCCCCCCHHHHHHHhccCCCceEEEEeecCC---cCceEEEEecCHHHHHHHHhcCCCeecCeeEEEEec
Q 026156            7 VAEVVGLSPNATEKDIHEFFSHCGDPVHVEIIRSGE---CGGTAYVTFSNAYALETAVLLSGATIVDQPVCIIRW   78 (242)
Q Consensus         7 tV~VsNLs~~~TE~dLrefFs~~G~I~~V~l~~~~~---~~~~AfV~F~~~~aA~tAl~Lng~~l~g~~I~V~~a   78 (242)
                      .|||+|||+++|+++|+++|+.||+|.+|.|+.+..   +.+||||+|.++++|+.|+..++.+|+|+.|.|..+
T Consensus         1 klfVgnLp~~~te~~l~~~F~~~G~I~~v~i~~d~~t~~~rG~~FV~f~~~~~a~~al~~~~~~i~g~~i~vk~A   75 (75)
T d1x0fa1           1 KIFVGGLSPDTPEEKIREYFGGFGEVESIELPMDNKTNKRRGFCFITFKEEEPVKKIMEKKYHNVGLSKCEIKVA   75 (75)
T ss_dssp             EEEEESCCSSCCHHHHHHHHHHHSCEEEEECCCCTTTCCTTCCEEEEESSSHHHHHHTTCSSCCBTTBCCEEECC
T ss_pred             CEEEcCCCCCCCHHHHHHHHHHhCCcccccccccccccccccEEEEEECCHHHHHHHHhhCCCEECCEEeEEEEC
Confidence            589999999999999999999999999999997743   347999999999999999988999999999998753

>d1x5ua1 d.58.7.1 (A:7-99) Splicing factor 3B subunit 4 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: Splicing factor 3B subunit 4
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.66  E-value=1.5e-16  Score=118.35  Aligned_cols=76  Identities=17%  Similarity=0.281  Sum_probs=68.9

Q ss_pred             CcEEEEeCCCCCCCHHHHHHHhccCCCceEEEEeecCC---cCceEEEEecCHHHHHHHH-hcCCCeecCeeEEEEecCC
Q 026156            5 GYVAEVVGLSPNATEKDIHEFFSHCGDPVHVEIIRSGE---CGGTAYVTFSNAYALETAV-LLSGATIVDQPVCIIRWGE   80 (242)
Q Consensus         5 ~~tV~VsNLs~~~TE~dLrefFs~~G~I~~V~l~~~~~---~~~~AfV~F~~~~aA~tAl-~Lng~~l~g~~I~V~~a~~   80 (242)
                      .++|||+|||+.+|+++|+++|+.||+|.+|.++++..   ..+||||+|.++++|+.|+ .|||..|+|+.|+|..+.+
T Consensus         9 ~~tlfV~nLp~~~t~~~l~~~F~~~G~v~~v~~~~d~~tg~~kg~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~A~~   88 (93)
T d1x5ua1           9 DATVYVGGLDEKVSEPLLWELFLQAGPVVNTHMPKDRVTGQHQGYGFVEFLSEEDADYAIKIMDMIKLYGKPIRVNKASA   88 (93)
T ss_dssp             TTEEEEECCCTTCCHHHHHHHHHTTSCEEEEECCBCSSSCSBCSCEEEEESSHHHHHHHHHHSSSCBCSSCBCEEEETTT
T ss_pred             CCEEEEeCCCCcCCHHHHHHHHHHhCCccccceeecccccccccceEEEECCHHHHHHHHHHcCCCEECCEEEEEEEcCC
Confidence            47999999999999999999999999999999987643   3469999999999999995 7999999999999987643

>d1x4aa1 d.58.7.1 (A:9-103) Splicing factor, arginine/serine-rich 1, SFRS1 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: Splicing factor, arginine/serine-rich 1, SFRS1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.66  E-value=1.9e-16  Score=118.06  Aligned_cols=76  Identities=20%  Similarity=0.166  Sum_probs=69.5

Q ss_pred             CCcEEEEeCCCCCCCHHHHHHHhccCCCceEEEEeecCCcCceEEEEecCHHHHHHHH-hcCCCeecCeeEEEEecC
Q 026156            4 GGYVAEVVGLSPNATEKDIHEFFSHCGDPVHVEIIRSGECGGTAYVTFSNAYALETAV-LLSGATIVDQPVCIIRWG   79 (242)
Q Consensus         4 ~~~tV~VsNLs~~~TE~dLrefFs~~G~I~~V~l~~~~~~~~~AfV~F~~~~aA~tAl-~Lng~~l~g~~I~V~~a~   79 (242)
                      ..++|||+|||+.+|+++|+++|+.||.|..+.+..+....++|||+|.++++|+.|+ .|||..|.|++|.|..+.
T Consensus        13 ~~~~l~V~nLp~~~t~~~l~~~F~~~G~v~~~~~~~~~~~~g~afV~f~~~e~a~~Ai~~l~g~~~~g~~l~V~~a~   89 (95)
T d1x4aa1          13 NDCRIYVGNLPPDIRTKDIEDVFYKYGAIRDIDLKNRRGGPPFAFVEFEDPRDAEDAVYGRDGYDYDGYRLRVEFPR   89 (95)
T ss_dssp             CSSEEEEESCCTTCCHHHHHHHHGGGSCEEEEEECCSSSSSCCEEEEESCHHHHHHHHHHHTTCEETTEECEEECCC
T ss_pred             CCCEEEEECCCCCCCHHHHHHHHhcCCceEEEEecccccccceEEEEECCHHHHHHHHHHhCCCEECCEEEEEEecc
Confidence            3578999999999999999999999999999999877666689999999999999995 799999999999998653

>d2cq0a1 d.58.7.1 (A:231-320) Eukaryotic translation initiation factor 3 subunit 4 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: Eukaryotic translation initiation factor 3 subunit 4
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.66  E-value=2.6e-16  Score=116.12  Aligned_cols=77  Identities=18%  Similarity=0.233  Sum_probs=69.0

Q ss_pred             CCcEEEEeCCCCCCCHHHHHHHhccCCCceEEEEeecCC---cCceEEEEecCHHHHHHHH-hcCCCeecCeeEEEEecC
Q 026156            4 GGYVAEVVGLSPNATEKDIHEFFSHCGDPVHVEIIRSGE---CGGTAYVTFSNAYALETAV-LLSGATIVDQPVCIIRWG   79 (242)
Q Consensus         4 ~~~tV~VsNLs~~~TE~dLrefFs~~G~I~~V~l~~~~~---~~~~AfV~F~~~~aA~tAl-~Lng~~l~g~~I~V~~a~   79 (242)
                      ..++|||+|||+++++++|+++|+.||+|.+|.+..+..   ..++|||+|.+.++|+.|+ .|||..|+|+.|.|..+.
T Consensus         7 ~~~~i~V~nLp~~~t~~~l~~~f~~~G~v~~v~i~~d~~t~~~rg~afV~f~~~~~A~~Ai~~l~g~~~~g~~i~v~~ak   86 (90)
T d2cq0a1           7 DNATIRVTNLSEDTRETDLQELFRPFGSISRIYLAKDKTTGQSKGFAFISFHRREDAARAIAGVSGFGYDHLILNVEWAK   86 (90)
T ss_dssp             SSEEEEEESCCTTCCHHHHHTTSTTTCCEEEEEEEECSSSCSEEEEEEEEESSHHHHHHHHHHTTTCEETTEECEEEESS
T ss_pred             CCCEEEEECCCCCCCHHHHHHHHHHhcccccccccccccccccccceeEEECCHHHHHHHHHHhCCCEECCEEEEEEeee
Confidence            347999999999999999999999999999999998754   2359999999999999995 699999999999999765


Q ss_pred             C
Q 026156           80 E   80 (242)
Q Consensus        80 ~   80 (242)
                      +
T Consensus        87 p   87 (90)
T d2cq0a1          87 P   87 (90)
T ss_dssp             C
T ss_pred             C
Confidence            3

>d2cqga1 d.58.7.1 (A:96-185) TAR DNA-binding protein 43, TDP-43 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: TAR DNA-binding protein 43, TDP-43
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.66  E-value=3.3e-16  Score=116.25  Aligned_cols=75  Identities=20%  Similarity=0.198  Sum_probs=66.6

Q ss_pred             CCcEEEEeCCCCCCCHHHHHHHhccCCCceEEEEeecCC---cCceEEEEecCHHHHHHHHhcCCCeecCeeEEEEecC
Q 026156            4 GGYVAEVVGLSPNATEKDIHEFFSHCGDPVHVEIIRSGE---CGGTAYVTFSNAYALETAVLLSGATIVDQPVCIIRWG   79 (242)
Q Consensus         4 ~~~tV~VsNLs~~~TE~dLrefFs~~G~I~~V~l~~~~~---~~~~AfV~F~~~~aA~tAl~Lng~~l~g~~I~V~~a~   79 (242)
                      ..++|||+|||+++||++|+++|+.||+|.+|.|+.+..   +.+||||+|.++++|+.|+. ++..|+|+.|.|..+.
T Consensus         7 ~~~~lfV~nLp~~~te~~l~~~F~~~G~i~~v~i~~d~~tg~srG~aFV~f~~~~~a~~al~-~~~~l~Gr~i~v~~a~   84 (90)
T d2cqga1           7 KTSDLIVLGLPWKTTEQDLKEYFSTFGEVLMVQVKKDLKTGHSKGFGFVRFTEYETQVKVMS-QRHMIDGRWCDCKLPN   84 (90)
T ss_dssp             CCCCEEEESCCSSCCHHHHHHHHGGGSCEEEEEEEECSSSCSEEEEEEEEESSHHHHHHHHH-SCEEETTEEEEEECCC
T ss_pred             CCCeEEEECCCCCCCHHHHHHHHHhhcccceeeeccCCCCcccCCEEEEEECCHHHHHHHHh-cCCccCCEEeEEEeCC
Confidence            457899999999999999999999999999999998754   23699999999999999976 5668999999998664

>d1wi8a_ d.58.7.1 (A:) Eukaryotic translation initiation factor 4B {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: Eukaryotic translation initiation factor 4B
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.65  E-value=5.1e-16  Score=117.04  Aligned_cols=75  Identities=23%  Similarity=0.283  Sum_probs=66.2

Q ss_pred             CcEEEEeCCCCCCCHHHHHHHhccCCCceEEEEeecCC----cCceEEEEecCHHHHHHHHhcCCCeecCeeEEEEecCC
Q 026156            5 GYVAEVVGLSPNATEKDIHEFFSHCGDPVHVEIIRSGE----CGGTAYVTFSNAYALETAVLLSGATIVDQPVCIIRWGE   80 (242)
Q Consensus         5 ~~tV~VsNLs~~~TE~dLrefFs~~G~I~~V~l~~~~~----~~~~AfV~F~~~~aA~tAl~Lng~~l~g~~I~V~~a~~   80 (242)
                      .++|||+|||+.+||++|++||+.|| |.++.++.+..    ..++|||+|.++++|+.|+.|||..|+|+.|.|..+.+
T Consensus        15 ~~~v~V~nLp~~~te~~l~~~f~~~g-~~~~~~~~~~~~~g~~~g~afV~f~~~e~a~~~~~~~~~~~~gr~l~V~~a~~   93 (104)
T d1wi8a_          15 PYTAFLGNLPYDVTEESIKEFFRGLN-ISAVRLPREPSNPERLKGFGYAEFEDLDSLLSALSLNEESLGNKRIRVDVADQ   93 (104)
T ss_dssp             CEEEEEESCCSSCCHHHHHHHTTTSC-EEEEECCBCSSCTTSBCSCEEEEESSHHHHHHHHGGGTCEETTEECEEEECCC
T ss_pred             CCEEEEeCCCCcCCHHHHHHHHHHhc-cccceeeeeeccCCCcceeeeEEECCHHHHHHHHHcCCCEECCEEEEEEECCC
Confidence            37999999999999999999999999 78888876532    23699999999999998899999999999999997653

>d2adca1 d.58.7.1 (A:335-443) Polypyrimidine tract-binding protein {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: Polypyrimidine tract-binding protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.64  E-value=3.6e-16  Score=118.31  Aligned_cols=74  Identities=24%  Similarity=0.333  Sum_probs=67.0

Q ss_pred             CCcEEEEeCCCCC-CCHHHHHHHhccCCCceEEEEeecCCcCceEEEEecCHHHHHHH-HhcCCCeecCeeEEEEecC
Q 026156            4 GGYVAEVVGLSPN-ATEKDIHEFFSHCGDPVHVEIIRSGECGGTAYVTFSNAYALETA-VLLSGATIVDQPVCIIRWG   79 (242)
Q Consensus         4 ~~~tV~VsNLs~~-~TE~dLrefFs~~G~I~~V~l~~~~~~~~~AfV~F~~~~aA~tA-l~Lng~~l~g~~I~V~~a~   79 (242)
                      +.++|||+||+|. +||++|+++|+.||+|.+|.|+++.  .++|||+|.++++|..| ..|||..|.|+.|.|..+.
T Consensus         1 g~~~l~V~nL~p~~~te~~L~~~F~~fG~I~~v~i~~~~--kg~afV~f~~~~~A~~ai~~lng~~l~g~~l~v~~s~   76 (109)
T d2adca1           1 GNSVLLVSNLNPERVTPQSLFILFGVYGDVQRVKILFNK--KENALVQMADGNQAQLAMSHLNGHKLHGKPIRITLSK   76 (109)
T ss_dssp             CCSEEEEESCCTTTCCHHHHHHHHHHHTCEEEEEECCTT--SCCEEEEESCHHHHHHHHHHHTTCBCSSSBCEEECCS
T ss_pred             CCCEEEEeCCCcccCCHHHHHHHHhhccccceEEEEecc--cceEEEEECCHHHHHHHHHHhCCCEECCEEEEEEECC
Confidence            3579999999775 9999999999999999999998763  46999999999999999 5899999999999999764

>d2cpja1 d.58.7.1 (A:65-150) Non-POU domain-containing octamer-binding protein, NonO {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: Non-POU domain-containing octamer-binding protein, NonO
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.64  E-value=3.3e-16  Score=115.01  Aligned_cols=73  Identities=19%  Similarity=0.226  Sum_probs=67.1

Q ss_pred             CCcEEEEeCCCCCCCHHHHHHHhccCCCceEEEEeecCCcCceEEEEecCHHHHHHH-HhcCCCeecCeeEEEEecC
Q 026156            4 GGYVAEVVGLSPNATEKDIHEFFSHCGDPVHVEIIRSGECGGTAYVTFSNAYALETA-VLLSGATIVDQPVCIIRWG   79 (242)
Q Consensus         4 ~~~tV~VsNLs~~~TE~dLrefFs~~G~I~~V~l~~~~~~~~~AfV~F~~~~aA~tA-l~Lng~~l~g~~I~V~~a~   79 (242)
                      ..++|||+|||+++++++|+++|+.||+|.+|.+.++   .++|||+|.++++|+.| ..|||..|.|+.|+|..+.
T Consensus         7 ~~~~l~V~nLp~~~~~~~l~~~F~~~G~i~~i~~~~~---k~~afV~f~~~~~A~~A~~~l~g~~i~g~~l~V~~A~   80 (86)
T d2cpja1           7 QRSRLFVGNLPPDITEEEMRKLFEKYGKAGEVFIHKD---KGFGFIRLETRTLAEIAKVELDNMPLRGKQLRVRFAC   80 (86)
T ss_dssp             CTTEEEEESCCTTCCHHHHHHHTSTTCCCSEEEEETT---TTEEEEECSSSHHHHHHHHHHTTCCBTTBCCEEEESS
T ss_pred             CCCEEEEECCCCCCCHHHHHHHHHHhCCceEeeeecc---cceEEEEECCHHHHHHHHHHhCCCEECCEEEEEEECC
Confidence            4468999999999999999999999999999999865   36999999999999999 5799999999999999764

>d1p1ta_ d.58.7.1 (A:) Cleavage stimulation factor, 64 kda subunit {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: Cleavage stimulation factor, 64 kda subunit
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.64  E-value=2.1e-16  Score=119.29  Aligned_cols=74  Identities=18%  Similarity=0.264  Sum_probs=67.5

Q ss_pred             cEEEEeCCCCCCCHHHHHHHhccCCCceEEEEeecCCc---CceEEEEecCHHHHHHHH-hcCCCeecCeeEEEEecC
Q 026156            6 YVAEVVGLSPNATEKDIHEFFSHCGDPVHVEIIRSGEC---GGTAYVTFSNAYALETAV-LLSGATIVDQPVCIIRWG   79 (242)
Q Consensus         6 ~tV~VsNLs~~~TE~dLrefFs~~G~I~~V~l~~~~~~---~~~AfV~F~~~~aA~tAl-~Lng~~l~g~~I~V~~a~   79 (242)
                      ++|||+|||+.+++++|+++|+.||+|.+|.|+.+..+   .+||||+|.++++|..|+ .|||..|.|+.|.|..+.
T Consensus         9 rtl~V~nLp~~~te~~l~~~f~~~G~i~~v~i~~~~~tg~~~g~afV~f~~~~~a~~ai~~l~~~~~~g~~i~V~~a~   86 (104)
T d1p1ta_           9 RSVFVGNIPYEATEEQLKDIFSEVGPVVSFRLVYDRETGKPKGYGFCEYQDQETALSAMRNLNGREFSGRALRVDNAA   86 (104)
T ss_dssp             SCEEEESCCTTSCHHHHHHHHHTTSCCSEEEEEEETTTTEEEEEEEEECSCHHHHHHHHHHSSSBSCSSSCBEEEETT
T ss_pred             CEEEEECCCCcCCHHHHHHhhhccccccccccccccceeccCCceEEEECCHHHHHHHHHHcCCCEECCEEEEEEECC
Confidence            68999999999999999999999999999999976542   369999999999999995 789999999999998753

>d2cpza1 d.58.7.1 (A:383-484) CUG triplet repeat RNA-binding protein 1 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: CUG triplet repeat RNA-binding protein 1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.64  E-value=4.6e-16  Score=117.56  Aligned_cols=77  Identities=14%  Similarity=0.213  Sum_probs=68.8

Q ss_pred             CCCcEEEEeCCCCCCCHHHHHHHhccCCCceEEEEeecCCc---CceEEEEecCHHHHHHHH-hcCCCeecCeeEEEEec
Q 026156            3 AGGYVAEVVGLSPNATEKDIHEFFSHCGDPVHVEIIRSGEC---GGTAYVTFSNAYALETAV-LLSGATIVDQPVCIIRW   78 (242)
Q Consensus         3 ~~~~tV~VsNLs~~~TE~dLrefFs~~G~I~~V~l~~~~~~---~~~AfV~F~~~~aA~tAl-~Lng~~l~g~~I~V~~a   78 (242)
                      |..++|||+|||+.+++++|+++|+.||.|.++.++.+...   .++|||+|.++++|+.|+ .|||..|+|++|.|..+
T Consensus        16 p~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~~~~~~~~~~g~~kG~afV~f~~~~~A~~Ai~~lng~~~~g~~i~V~~a   95 (102)
T d2cpza1          16 PEGANLFIYHLPQEFGDQDLLQMFMPFGNVVSAKVFIDKQTNLSKCFGFVSYDNPVSAQAAIQSMNGFQIGMKRLKVQLK   95 (102)
T ss_dssp             STTCCEEEESCCSSCCHHHHHHHHGGGSCCSEEEEEECSSSCSEEEEEEEECSSHHHHHHHHHHHTTCEETTEECEEECC
T ss_pred             CCCCEEEEeCCCCCCCHHHHHHHHHhhccccccceeeecccCCCccceEEEeCCHHHHHHHHHHhCCCEECCEEEEEEEe
Confidence            34478999999999999999999999999999999976442   369999999999999996 79999999999999866


Q ss_pred             C
Q 026156           79 G   79 (242)
Q Consensus        79 ~   79 (242)
                      .
T Consensus        96 ~   96 (102)
T d2cpza1          96 R   96 (102)
T ss_dssp             C
T ss_pred             C
Confidence            4

>d1u6fa1 d.58.7.1 (A:1-139) RNA-binding protein UBP1 {Trypanosoma cruzi [TaxId: 5693]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: RNA-binding protein UBP1
species: Trypanosoma cruzi [TaxId: 5693]

Probab=99.64  E-value=4.7e-16  Score=122.93  Aligned_cols=76  Identities=18%  Similarity=0.252  Sum_probs=69.0

Q ss_pred             cEEEEeCCCCCCCHHHHHHHhccCCCceEEEEeecCCc---CceEEEEecCHHHHHHHH-hcCCCeecCeeEEEEecCCC
Q 026156            6 YVAEVVGLSPNATEKDIHEFFSHCGDPVHVEIIRSGEC---GGTAYVTFSNAYALETAV-LLSGATIVDQPVCIIRWGEY   81 (242)
Q Consensus         6 ~tV~VsNLs~~~TE~dLrefFs~~G~I~~V~l~~~~~~---~~~AfV~F~~~~aA~tAl-~Lng~~l~g~~I~V~~a~~~   81 (242)
                      ++|||+|||+++||++|+++|+.||+|.+|.++++..+   .+||||+|.+.++|..|+ .|||..|+|+.|.|..+...
T Consensus        43 ~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~d~~t~~~rg~afV~f~~~~~A~~Ai~~lng~~~~gr~l~V~~a~~~  122 (139)
T d1u6fa1          43 RNLMVNYIPTTVDEVQLRQLFERYGPIESVKIVCDRETRQSRGYGFVKFQSGSSAQQAIAGLNGFNILNKRLKVALAASG  122 (139)
T ss_dssp             SEEEEESCSTTCCHHHHHHHHHHHSCEEEEEEEEETTTTEEEEEEEEEESSHHHHHHHHHHTTTEECSSCEEEEEESSCC
T ss_pred             CEEEEeCCCCCCCHHHHHHHHHhhccccccccccccccccccceeeEEECCHHHHHHHHHHhCCCEECCEEEEEEEcCCC
Confidence            68999999999999999999999999999999987542   369999999999999996 69999999999999987543

>d1x4ga1 d.58.7.1 (A:8-103) Nucleolysin TIAR {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: Nucleolysin TIAR
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.64  E-value=3.8e-16  Score=117.02  Aligned_cols=73  Identities=21%  Similarity=0.273  Sum_probs=66.9

Q ss_pred             CCCcEEEEeCCCCCCCHHHHHHHhccCCCceEEEEeecCCcCceEEEEecCHHHHHHH-HhcCCCeecCeeEEEEec
Q 026156            3 AGGYVAEVVGLSPNATEKDIHEFFSHCGDPVHVEIIRSGECGGTAYVTFSNAYALETA-VLLSGATIVDQPVCIIRW   78 (242)
Q Consensus         3 ~~~~tV~VsNLs~~~TE~dLrefFs~~G~I~~V~l~~~~~~~~~AfV~F~~~~aA~tA-l~Lng~~l~g~~I~V~~a   78 (242)
                      +..++|||+|||+.+++++|+++|+.||+|.+|++.++   .++|||+|.++++|..| ..|||..|+|+.|+|.-+
T Consensus        16 ~~~~~l~v~nL~~~~te~~L~~~F~~fG~i~~v~i~~~---kg~afV~f~~~~~A~~Ai~~l~~~~i~g~~l~v~~a   89 (96)
T d1x4ga1          16 PKNCTVYCGGIASGLTDQLMRQTFSPFGQIMEIRVFPE---KGYSFVRFSTHESAAHAIVSVNGTTIEGHVVKCYWG   89 (96)
T ss_dssp             SSCCEEEEECCSSCCCHHHHHHHHHHHSCEEEEEEETT---TTEEEEEESSHHHHHHHHHHHTTCEETTEECEEECC
T ss_pred             CCCCEEEEcCCCCCCCHHHHHHHHHHhCCceEEEEEec---ceEEEEEECCHHHHHHHHHHhCCCEECCEEEEEEEc
Confidence            34578999999999999999999999999999999976   46999999999999999 489999999999999854

>d1whxa_ d.58.7.1 (A:) Probable RNA-binding protein 19, Rbm19 {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: Probable RNA-binding protein 19, Rbm19
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.64  E-value=2.1e-16  Score=119.84  Aligned_cols=74  Identities=22%  Similarity=0.170  Sum_probs=66.8

Q ss_pred             CCcEEEEeCCCCCCCHHHHHHHhccCCCceEEEEeecCCcCceEEEEecCHHHHHHHH-hcCCCeecCeeEEEEecCC
Q 026156            4 GGYVAEVVGLSPNATEKDIHEFFSHCGDPVHVEIIRSGECGGTAYVTFSNAYALETAV-LLSGATIVDQPVCIIRWGE   80 (242)
Q Consensus         4 ~~~tV~VsNLs~~~TE~dLrefFs~~G~I~~V~l~~~~~~~~~AfV~F~~~~aA~tAl-~Lng~~l~g~~I~V~~a~~   80 (242)
                      +.++|||+|||+.+++++|+++|+.||+|.+|.|.+.   .++|||+|.++++|..|+ .|||..|.|++|.|..+..
T Consensus         9 ~~~~l~V~nLp~~~t~~~L~~~F~~fG~I~~v~l~~~---kg~afV~f~~~~~A~~A~~~lng~~~~gr~l~v~~a~~   83 (111)
T d1whxa_           9 SKTVILAKNLPAGTLAAEIQETFSRFGSLGRVLLPEG---GITAIVEFLEPLEARKAFRHLAYSKFHHVPLYLEWAPI   83 (111)
T ss_dssp             EEEEEEEESCCTTCCHHHHHHHHHTTSCEEEEECCSS---SSCEEEEESCHHHHHHHHHHHTTCBSSSSBCEEEEEET
T ss_pred             CCCEEEEECCCCCCCHHHHHhhhhccCCccEEEeecc---CceEEEEEcCHHHHHHHHHHHcCCccCCCeEEEEECCC
Confidence            3478999999999999999999999999999998643   479999999999999995 8999999999999987644

>d1fjeb1 d.58.7.1 (B:1-91) Nucleolin {Golden hamster (Mesocricetus auratus) [TaxId: 10036]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: Nucleolin
species: Golden hamster (Mesocricetus auratus) [TaxId: 10036]

Probab=99.64  E-value=4.6e-17  Score=120.98  Aligned_cols=76  Identities=18%  Similarity=0.236  Sum_probs=68.1

Q ss_pred             CCcEEEEeCCCCCCCHHHHHHHhccCCCceEEEEeec--CCcCceEEEEecCHHHHHHHHhcCCCeecCeeEEEEecC
Q 026156            4 GGYVAEVVGLSPNATEKDIHEFFSHCGDPVHVEIIRS--GECGGTAYVTFSNAYALETAVLLSGATIVDQPVCIIRWG   79 (242)
Q Consensus         4 ~~~tV~VsNLs~~~TE~dLrefFs~~G~I~~V~l~~~--~~~~~~AfV~F~~~~aA~tAl~Lng~~l~g~~I~V~~a~   79 (242)
                      ..++|||+|||+.+|+++|+++|+.||.|.++.++.+  +...++|||+|.++++++.|+.|||..|+|++|.|..+.
T Consensus        12 ~~~~ifV~nL~~~~te~~l~~~F~~~G~i~~~~v~~~~~g~~kg~afv~F~~~e~a~~Al~~~g~~~~g~~i~V~~ak   89 (91)
T d1fjeb1          12 TPFNLFIGNLNPNKSVAELKVAISELFAKNDLAVVDVRTGTNRKFGYVDFESAEDLEKALELTGLKVFGNEIKLEKPK   89 (91)
T ss_dssp             SSEEEEEECCCTTSCHHHHHHHHHHHHHHHTCCCCEEEEETTTTEEEEEESSHHHHHHHHHGGGEEETTEEEEEECCC
T ss_pred             CCcEEEEeCccCcchHHHHHHHHhcCCcEEEeeeeecCCCCccEEeEEeeCCHHHHHHHHhcCCcEECCEEEEEEecC
Confidence            3478999999999999999999999999999988744  334579999999999999999899999999999999764

>d1weza_ d.58.7.1 (A:) Heterogeneous nuclear ribonucleoprotein H' {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: Heterogeneous nuclear ribonucleoprotein H'
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.64  E-value=4e-16  Score=117.77  Aligned_cols=76  Identities=28%  Similarity=0.302  Sum_probs=66.4

Q ss_pred             CCcEEEEeCCCCCCCHHHHHHHhccCCCceEEEEeecCC--cCceEEEEecCHHHHHHHHhcCCCeecCeeEEEEecCC
Q 026156            4 GGYVAEVVGLSPNATEKDIHEFFSHCGDPVHVEIIRSGE--CGGTAYVTFSNAYALETAVLLSGATIVDQPVCIIRWGE   80 (242)
Q Consensus         4 ~~~tV~VsNLs~~~TE~dLrefFs~~G~I~~V~l~~~~~--~~~~AfV~F~~~~aA~tAl~Lng~~l~g~~I~V~~a~~   80 (242)
                      ..++|||+|||+++||++|++||+.|| |..|.++.+..  ..++|||+|.++++|+.|+.||+..|+|+.|.|..+..
T Consensus        14 ~~~~v~v~nLp~~~te~dl~~~F~~~~-~~~v~~~~~~~g~~~G~afVeF~~~~~a~~Al~~~~~~i~gR~I~V~~s~~   91 (102)
T d1weza_          14 TGHCVHMRGLPYRATENDIYNFFSPLN-PMRVHIEIGPDGRVTGEADVEFATHEDAVAAMAKDKANMQHRYVELFLNST   91 (102)
T ss_dssp             SSCEEEEESCCTTCCHHHHHHSSCSCC-CSEEEEEESSSSCEEEEEEEECSSSHHHHHHHTTSSCCSSSSCCEEEEECC
T ss_pred             CCCEEEEeCCCCcCCHHHHHHHHhccC-cceeeeEEecCCcceEEEEEEECCHHHHHHHHHcCCCEECCEEEEEEEcCC
Confidence            447999999999999999999999998 55777776533  34799999999999999999999999999999987654

>d1fxla2 d.58.7.1 (A:119-203) Hu antigen D (Hud) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: Hu antigen D (Hud)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.63  E-value=4.4e-16  Score=113.88  Aligned_cols=73  Identities=22%  Similarity=0.376  Sum_probs=64.7

Q ss_pred             CCcEEEEeCCCCCCCHHHHHHHhccCCCceEEEEeecCC---cCceEEEEecCHHHHHHHH-hcCCCeecCe--eEEEE
Q 026156            4 GGYVAEVVGLSPNATEKDIHEFFSHCGDPVHVEIIRSGE---CGGTAYVTFSNAYALETAV-LLSGATIVDQ--PVCII   76 (242)
Q Consensus         4 ~~~tV~VsNLs~~~TE~dLrefFs~~G~I~~V~l~~~~~---~~~~AfV~F~~~~aA~tAl-~Lng~~l~g~--~I~V~   76 (242)
                      .+++|||+|||+.+|+++|+++|+.||+|.+++++.+..   ..++|||+|.++++|+.|+ .|||..+.|+  +|.|.
T Consensus         5 k~~~lfV~nLp~~~te~~L~~~F~~~G~v~~v~i~~d~~~g~~kg~afV~f~~~~~a~~Ai~~lng~~~~G~~~~i~V~   83 (85)
T d1fxla2           5 RDANLYVSGLPKTMTQKELEQLFSQYGRIITSRILVDQVTGVSRGVGFIRFDKRIEAEEAIKGLNGQKPSGATEPITVK   83 (85)
T ss_dssp             TTCEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCCCTTCSSCCEEE
T ss_pred             CCCEEEEeCCCCCCCHHHHHHHHHHhCCccccccccccccccCCCeeEEEEcCHHHHHHHHHHhCCCEeCCCCEEEEEE
Confidence            457899999999999999999999999999999998643   3369999999999999995 7999999984  47775

>d2cpia1 d.58.7.1 (A:101-189) E3 ubiquitin protein ligase CNOT4 {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: E3 ubiquitin protein ligase CNOT4
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.63  E-value=2.2e-16  Score=116.73  Aligned_cols=72  Identities=22%  Similarity=0.294  Sum_probs=64.3

Q ss_pred             CcEEEEeCCCCCCCHHHH---HHHhccCCCceEEEEeecCC------cCceEEEEecCHHHHHHHH-hcCCCeecCeeEE
Q 026156            5 GYVAEVVGLSPNATEKDI---HEFFSHCGDPVHVEIIRSGE------CGGTAYVTFSNAYALETAV-LLSGATIVDQPVC   74 (242)
Q Consensus         5 ~~tV~VsNLs~~~TE~dL---refFs~~G~I~~V~l~~~~~------~~~~AfV~F~~~~aA~tAl-~Lng~~l~g~~I~   74 (242)
                      .++|||+|||+.+++++|   +++|+.||+|.+|.+.++..      ..++|||+|.++++|..|+ .|||..|+|++|+
T Consensus         8 ~n~vyV~nLp~~~t~~~l~~~~e~F~~~G~I~~v~i~~~~~~~~~~~~~g~aFV~f~~~~~A~~Ai~~lng~~~~gr~lk   87 (89)
T d2cpia1           8 KNLVFVVGLSQRLADPEVLKRPEYFGKFGKIHKVVINNSTSYAGSQGPSASAYVTYIRSEDALRAIQCVNNVVVDGRTLK   87 (89)
T ss_dssp             SSCEEEEEECTTTCCHHHHHSTTTTTTTSCEEEEEEECCSSCCSSSCCCEEEEEEESSHHHHHHHHHHHTTEEETTEEEE
T ss_pred             cCEEEEECCCCccCHHHHHHHHHHhcccCCceEEEEeeccCcCCCCCcceEEEEecccchhHHHHHHHhCCCEECCEEEE
Confidence            368999999999999999   77999999999999997642      1269999999999999995 7999999999999


Q ss_pred             EE
Q 026156           75 II   76 (242)
Q Consensus        75 V~   76 (242)
                      |+
T Consensus        88 vS   89 (89)
T d2cpia1          88 AS   89 (89)
T ss_dssp             EE
T ss_pred             EC
Confidence            84

>d1b7fa2 d.58.7.1 (A:205-289) Sex-lethal protein {Drosophila melanogaster [TaxId: 7227]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: Sex-lethal protein
species: Drosophila melanogaster [TaxId: 7227]

Probab=99.63  E-value=7.3e-16  Score=112.39  Aligned_cols=75  Identities=20%  Similarity=0.275  Sum_probs=66.3

Q ss_pred             CCcEEEEeCCCCCCCHHHHHHHhccCCCceEEEEeecCC---cCceEEEEecCHHHHHHHH-hcCCCeecC--eeEEEEe
Q 026156            4 GGYVAEVVGLSPNATEKDIHEFFSHCGDPVHVEIIRSGE---CGGTAYVTFSNAYALETAV-LLSGATIVD--QPVCIIR   77 (242)
Q Consensus         4 ~~~tV~VsNLs~~~TE~dLrefFs~~G~I~~V~l~~~~~---~~~~AfV~F~~~~aA~tAl-~Lng~~l~g--~~I~V~~   77 (242)
                      ..++|||+|||+.++|++|+++|+.||+|.+|+++++..   ..++|||+|.++++|..|+ .|||..+.|  ++|.|..
T Consensus         5 ~~t~lfV~nlp~~~te~~l~~~F~~~G~i~~~~~~~d~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~~~l~V~~   84 (85)
T d1b7fa2           5 KDTNLYVTNLPRTITDDQLDTIFGKYGSIVQKNILRDKLTGRPRGVAFVRYNKREEAQEAISALNNVIPEGGSQPLSVRL   84 (85)
T ss_dssp             TTCEEEEESCCTTCCHHHHHHHHTSSSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCCCTTCSSCCEEEE
T ss_pred             CCCEEEEeCCCCCCCHHHHHHHHHhhCCEeeeeeecccccccCceeEEEEECCHHHHHHHHHHHCCCEeCCCCeEEEEEE
Confidence            346899999999999999999999999999999998754   2369999999999999995 799999976  7899875


Q ss_pred             c
Q 026156           78 W   78 (242)
Q Consensus        78 a   78 (242)
                      +
T Consensus        85 A   85 (85)
T d1b7fa2          85 A   85 (85)
T ss_dssp             C
T ss_pred             C
Confidence            3

>d1wg5a_ d.58.7.1 (A:) Heterogeneous nuclear ribonucleoprotein H' {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: Heterogeneous nuclear ribonucleoprotein H'
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.62  E-value=1.3e-15  Score=115.23  Aligned_cols=77  Identities=18%  Similarity=0.165  Sum_probs=67.0

Q ss_pred             CcEEEEeCCCCCCCHHHHHHHhccCCCceEEEEeecCC---cCceEEEEecCHHHHHHHHhcCCCeecCeeEEEEecCCC
Q 026156            5 GYVAEVVGLSPNATEKDIHEFFSHCGDPVHVEIIRSGE---CGGTAYVTFSNAYALETAVLLSGATIVDQPVCIIRWGEY   81 (242)
Q Consensus         5 ~~tV~VsNLs~~~TE~dLrefFs~~G~I~~V~l~~~~~---~~~~AfV~F~~~~aA~tAl~Lng~~l~g~~I~V~~a~~~   81 (242)
                      ..+|||+|||+++||+||++||+.||.|..+.++.++.   ..++|||+|.++++|+.|+.+|+..|+|+.|.|.++...
T Consensus        15 ~~~v~v~nLP~~~te~dI~~~F~~~g~v~~~v~~~~~~~~~~kG~afV~F~~~e~a~~a~~~~~~~i~gR~i~V~~~~~~   94 (104)
T d1wg5a_          15 DGFVRLRGLPFGCSKEEIVQFFSGLEIVPNGMTLPVDFQGRSTGEAFVQFASQEIAEKALKKHKERIGHRYIEIFKSSRA   94 (104)
T ss_dssp             CCEEEEESCCTTCCHHHHHHHTTTCCEEEEEEECCBCSSSCBCSEEEEEESSHHHHHHHHTTTTCCSSSSCCEEEEECTT
T ss_pred             CcEEEEeCCCCCCCHHHHHHHHHhcCCceEEEEEEeCCCCCcceEEEEEeCCHHHHHHHHhhCCCEEcceEEEEEECCHH
Confidence            46899999999999999999999999998865554322   347999999999999999999999999999999987544

>d1x4ha1 d.58.7.1 (A:8-105) RNA-binding protein 28 {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: RNA-binding protein 28
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.62  E-value=1.1e-15  Score=113.27  Aligned_cols=77  Identities=17%  Similarity=0.210  Sum_probs=66.9

Q ss_pred             CCcEEEEeCCCCCCCHHHHHHHhccCCCceEEEEeecCC---cCceEEEEecCHHHHHHHH-hc------CCCeecCeeE
Q 026156            4 GGYVAEVVGLSPNATEKDIHEFFSHCGDPVHVEIIRSGE---CGGTAYVTFSNAYALETAV-LL------SGATIVDQPV   73 (242)
Q Consensus         4 ~~~tV~VsNLs~~~TE~dLrefFs~~G~I~~V~l~~~~~---~~~~AfV~F~~~~aA~tAl-~L------ng~~l~g~~I   73 (242)
                      ..++|||+|||+++||++|+++|+.||+|.++.+..+..   ..++|||+|.++++|..|+ .|      +|..|.|+.|
T Consensus         7 ~~~tlfV~nLp~~~te~~l~~~f~~~G~v~~~~~~~~~~~~~~~g~afV~F~~~~~a~~ai~~l~~~~~~~g~~~~gr~l   86 (98)
T d1x4ha1           7 EGKTVFIRNLSFDSEEEALGEVLQQFGDLKYVRVVLHPDTEHSKGCAFAQFMTQEAAQKCLAAASLEAEGGGLKLDGRQL   86 (98)
T ss_dssp             CCCCEEEESCCTTCCHHHHHHHHHTTSCEEEEECCBCSSSCCBCSEEEEEESSHHHHHHHHHHHCTTTTTCCEESSSCEE
T ss_pred             CCCEEEEcCCCCcCCHHHHHHHHhccccceeeeeccccccccccceEEEEEcCHHHHHHHHHHcccccccCCcEECCEEE
Confidence            458999999999999999999999999999999987643   3479999999999999994 44      4778999999


Q ss_pred             EEEecCC
Q 026156           74 CIIRWGE   80 (242)
Q Consensus        74 ~V~~a~~   80 (242)
                      .|..+.+
T Consensus        87 ~v~~a~~   93 (98)
T d1x4ha1          87 KVDLAVT   93 (98)
T ss_dssp             EEECCCC
T ss_pred             EEEECCC
Confidence            9987643

>d2cpha1 d.58.7.1 (A:454-547) Probable RNA-binding protein 19, Rbm19 {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: Probable RNA-binding protein 19, Rbm19
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.62  E-value=7.3e-16  Score=114.80  Aligned_cols=76  Identities=17%  Similarity=0.215  Sum_probs=67.2

Q ss_pred             CCcEEEEeCCCCCCCHHHHHHHhccCCCceEEEEeecC----CcCceEEEEecCHHHHHHHH-hc-CCCeecCeeEEEEe
Q 026156            4 GGYVAEVVGLSPNATEKDIHEFFSHCGDPVHVEIIRSG----ECGGTAYVTFSNAYALETAV-LL-SGATIVDQPVCIIR   77 (242)
Q Consensus         4 ~~~tV~VsNLs~~~TE~dLrefFs~~G~I~~V~l~~~~----~~~~~AfV~F~~~~aA~tAl-~L-ng~~l~g~~I~V~~   77 (242)
                      ..++|||+|||+.++|++|+++|+.||.|.+|.|+++.    ...++|||+|.++++|..|+ .| ||..|.|++|.|..
T Consensus         7 ~~~~l~V~nLp~~~~e~~l~~~F~~~G~i~~v~i~~~~~~~g~~rg~afV~f~~~~~A~~Ai~~l~~~~~~~Gr~l~V~~   86 (94)
T d2cpha1           7 TTSKILVRNIPFQANQREIRELFSTFGELKTVRLPKKMTGTGAHRGFGFVDFITKQDAKKAFNALCHSTHLYGRRLVLEW   86 (94)
T ss_dssp             CCCCEEEESCCTTCCHHHHHHHHHTTSCEEEEECCCCCSSSCSSCSEEEEEESSHHHHHHHHHHHHTCCBSSSCBCEEEE
T ss_pred             CCCEEEEeCCCCCCCHHHHHHHHHHhCCceEEEEEeccccCCCcccEEEEEECCHHHHHHHHHHccCCcEECCEEEEEEE
Confidence            34789999999999999999999999999999998652    23479999999999999995 45 99999999999997


Q ss_pred             cC
Q 026156           78 WG   79 (242)
Q Consensus        78 a~   79 (242)
                      +.
T Consensus        87 A~   88 (94)
T d2cpha1          87 AD   88 (94)
T ss_dssp             CC
T ss_pred             cC
Confidence            64

>d2cpya1 d.58.7.1 (A:536-638) RNA-binding protein 12 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: RNA-binding protein 12
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.62  E-value=6.7e-16  Score=116.30  Aligned_cols=78  Identities=14%  Similarity=0.158  Sum_probs=67.0

Q ss_pred             CCCCcEEEEeCCCCCCCHHHHHHHhccCCCceEE-EEeec--CCcCceEEEEecCHHHHHHHHhcCCCeecCeeEEEEec
Q 026156            2 YAGGYVAEVVGLSPNATEKDIHEFFSHCGDPVHV-EIIRS--GECGGTAYVTFSNAYALETAVLLSGATIVDQPVCIIRW   78 (242)
Q Consensus         2 ~~~~~tV~VsNLs~~~TE~dLrefFs~~G~I~~V-~l~~~--~~~~~~AfV~F~~~~aA~tAl~Lng~~l~g~~I~V~~a   78 (242)
                      .+...+|||+|||+++|+++|++||+.||.|..+ .+..+  +...++|||+|.++++|+.|+.|||..|+|+.|.|.++
T Consensus         5 ~~~~~~v~v~nLp~~~t~~~l~~~F~~~g~i~~~~~~~~~~~g~~~G~afV~F~s~~~a~~Al~~n~~~i~gr~i~V~~~   84 (103)
T d2cpya1           5 NSAKVCAHITNIPFSITKMDVLQFLEGIPVDENAVHVLVDNNGQGLGQALVQFKNEDDARKSERLHRKKLNGREAFVHVV   84 (103)
T ss_dssp             CSCCCEEEEESCCTTSCHHHHHHHTTTSCCCSTTEEECCCTTSSCSSCEEEECSSHHHHHHHGGGCSEEETTEEEEEEEE
T ss_pred             CCCceEEEEeCCCCCCCHHHHhhhhcccceEEEEEEEEeCCCCCcCccEEEEECCHHHHHHHHhcCCCeECCcEEEEEEC
Confidence            3455789999999999999999999999999874 44433  22457999999999999999999999999999999876


Q ss_pred             C
Q 026156           79 G   79 (242)
Q Consensus        79 ~   79 (242)
                      .
T Consensus        85 ~   85 (103)
T d2cpya1          85 T   85 (103)
T ss_dssp             C
T ss_pred             C
Confidence            3

>d1x5ta1 d.58.7.1 (A:8-90) Splicing factor 3B subunit 4 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: Splicing factor 3B subunit 4
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.61  E-value=9e-16  Score=111.18  Aligned_cols=72  Identities=22%  Similarity=0.369  Sum_probs=64.1

Q ss_pred             EEEeCCCCCCCHHHHHHHhccCCCceEE-EEeecCC---cCceEEEEecCHHHHHHHH-hcCCCeecCeeEEEEecC
Q 026156            8 AEVVGLSPNATEKDIHEFFSHCGDPVHV-EIIRSGE---CGGTAYVTFSNAYALETAV-LLSGATIVDQPVCIIRWG   79 (242)
Q Consensus         8 V~VsNLs~~~TE~dLrefFs~~G~I~~V-~l~~~~~---~~~~AfV~F~~~~aA~tAl-~Lng~~l~g~~I~V~~a~   79 (242)
                      |||+|||+++||++|+++|+.||.|.++ .+.++..   ..++|||+|.++++|+.|+ .|||..|+|++|.|..+.
T Consensus         1 lfV~nLp~~~te~~l~~~F~~~G~i~~~~~i~~~~~~g~~~g~afV~f~~~~~a~~Ai~~~~g~~~~gr~l~v~~a~   77 (83)
T d1x5ta1           1 IFIGNLDPEIDEKLLYDTFSAFGVILQTPKIMRDPDTGNSKGYAFINFASFDASDAAIEAMNGQYLCNRPITVSYAF   77 (83)
T ss_dssp             EEEECCCTTCCHHHHHHHHHTTSCBSSCCEECCCTTTCSCCSEEEEEBSSHHHHHHHHHTTTTCEETTEECEEEESC
T ss_pred             CEEcCCCCcCcHHHHHHHHHHhCceeeeEEEEeeccccccCceEEEEECCHHHHHHHHHhCCCcEECCEEEEEEEec
Confidence            7999999999999999999999999765 6776543   3479999999999999995 799999999999999764

>d2cpda1 d.58.7.1 (A:223-308) APOBEC1 stimulating protein {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: APOBEC1 stimulating protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.61  E-value=3.5e-15  Score=108.81  Aligned_cols=74  Identities=19%  Similarity=0.175  Sum_probs=66.5

Q ss_pred             CCCcEEEEeCCCCCCCHHHHHHHhccCCCceEEEEeecCCcCceEEEEecCHHHHHHHH-hcCCCeecCeeEEEEecC
Q 026156            3 AGGYVAEVVGLSPNATEKDIHEFFSHCGDPVHVEIIRSGECGGTAYVTFSNAYALETAV-LLSGATIVDQPVCIIRWG   79 (242)
Q Consensus         3 ~~~~tV~VsNLs~~~TE~dLrefFs~~G~I~~V~l~~~~~~~~~AfV~F~~~~aA~tAl-~Lng~~l~g~~I~V~~a~   79 (242)
                      +..++|||+|||+++|+++|+++|+.||.|..+++...   .++|||+|.++++|..|+ .|||..|.|+.|.|..+.
T Consensus         6 ~~~k~l~V~nLp~~~te~~l~~~F~~~g~i~~~~~~~~---rg~afV~f~~~~~A~~Ai~~l~~~~i~g~~i~V~~ak   80 (86)
T d2cpda1           6 SSVKILYVRNLMLSTSEEMIEKEFNNIKPGAVERVKKI---RDYAFVHFSNREDAVEAMKALNGKVLDGSPIEVTLAK   80 (86)
T ss_dssp             SCCCEEEEESCCTTCCHHHHHHHHHTTSTTCEEEEEEC---SSEEEEEESSHHHHHHHHHHHSSEEETTEEEEEECCC
T ss_pred             cCCCEEEEcCCCCCCCHHHHHHhhcccceeeeEEEccc---cEEEEEEeCCHHHHHHHHHHcCCCEECCEEEEEEecc
Confidence            34589999999999999999999999999999888654   469999999999999995 799999999999998653

>d2cpea1 d.58.7.1 (A:353-453) RNA-binding protein EWS {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: RNA-binding protein EWS
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.60  E-value=1.8e-15  Score=112.88  Aligned_cols=77  Identities=22%  Similarity=0.318  Sum_probs=65.6

Q ss_pred             CCcEEEEeCCCCCCCHHHHHHHhccCCCceE--------EEEeecCC---cCceEEEEecCHHHHHHHH-hcCCCeecCe
Q 026156            4 GGYVAEVVGLSPNATEKDIHEFFSHCGDPVH--------VEIIRSGE---CGGTAYVTFSNAYALETAV-LLSGATIVDQ   71 (242)
Q Consensus         4 ~~~tV~VsNLs~~~TE~dLrefFs~~G~I~~--------V~l~~~~~---~~~~AfV~F~~~~aA~tAl-~Lng~~l~g~   71 (242)
                      ..++|||+|||+.+||++|++||+.||.|..        +.+..+..   ..++|||+|.++++|..|+ .|||..|.|+
T Consensus         7 ~~~~i~V~nLp~~~te~~l~~~F~~~G~i~~~~~~~~~~~~~~~d~~~~~~~g~afV~f~~~~~a~~Ai~~l~g~~~~gr   86 (101)
T d2cpea1           7 DNSAIYVQGLNDSVTLDDLADFFKQCGVVKMNKRTGQPMIHIYLDKETGKPKGDATVSYEDPPTAKAAVEWFDGKDFQGS   86 (101)
T ss_dssp             CCCEEEEECCCTTCCHHHHHHHHTTTSCBCBCSSSCCBSEECCBCTTTCSBCSEEEEEBSSHHHHHHHHHHHTTCEETTE
T ss_pred             CCCEEEEECCCCcCCHHHHHHHHHHCceEEEeeecccceeEEeeccccccccceeeEEecCHHHHHHHHHHhCCCEECCE
Confidence            4579999999999999999999999999853        44444432   3479999999999999994 7999999999


Q ss_pred             eEEEEecCC
Q 026156           72 PVCIIRWGE   80 (242)
Q Consensus        72 ~I~V~~a~~   80 (242)
                      +|.|..+.+
T Consensus        87 ~i~V~~a~~   95 (101)
T d2cpea1          87 KLKVSLARK   95 (101)
T ss_dssp             ECEEECSSC
T ss_pred             EEEEEEcCC
Confidence            999998754

>d3begb1 d.58.7.1 (B:121-207) Splicing factor, arginine/serine-rich 1, SFRS1 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: Splicing factor, arginine/serine-rich 1, SFRS1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.59  E-value=2e-16  Score=116.20  Aligned_cols=69  Identities=22%  Similarity=0.293  Sum_probs=63.5

Q ss_pred             cEEEEeCCCCCCCHHHHHHHhccCCCceEEEEeecCCcCceEEEEecCHHHHHHHH-hcCCCeecCeeEEEEec
Q 026156            6 YVAEVVGLSPNATEKDIHEFFSHCGDPVHVEIIRSGECGGTAYVTFSNAYALETAV-LLSGATIVDQPVCIIRW   78 (242)
Q Consensus         6 ~tV~VsNLs~~~TE~dLrefFs~~G~I~~V~l~~~~~~~~~AfV~F~~~~aA~tAl-~Lng~~l~g~~I~V~~a   78 (242)
                      ++|||+|||+.+|+++|+++|+.||+|.++.+.++    ++|||+|.++++|+.|+ .|||..|.|+.|.|...
T Consensus         1 nrvfV~nlp~~~~~~~l~~~F~~~G~v~~~~i~~~----g~afV~f~~~~~a~~Ai~~l~g~~~~g~~i~v~~~   70 (87)
T d3begb1           1 NRVVVSGLPPSGSWQDLKDHMREAGDVCYADVYRD----GTGVVEFVRKEDMTYAVRKLDNTKFRSHEGETAYI   70 (87)
T ss_dssp             CCEEEEECCSSCCTTHHHHHHGGGSCEEEEEECTT----SEEEEEESSHHHHHHHHHHHTTCBCCCTTSCCCBC
T ss_pred             CeEEEECCCCcCCHHHHHHHHhhhccccccccccc----ceeeEEeCCHHHHHHHHHHhCCCEECCcEeEEeEE
Confidence            36999999999999999999999999999998754    69999999999999996 89999999999888654

>d1x5oa1 d.58.7.1 (A:8-108) RNA-binding motif, single-stranded-interacting protein 1, RBMS1 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: RNA-binding motif, single-stranded-interacting protein 1, RBMS1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.59  E-value=7.8e-16  Score=115.93  Aligned_cols=75  Identities=13%  Similarity=0.234  Sum_probs=66.7

Q ss_pred             CCcEEEEeCCCCCCCHHHHHHHhccCCCceEEEEeecCC--cCceEEEEecCHHHHHHHH-hcCCCeecCeeEEEEec
Q 026156            4 GGYVAEVVGLSPNATEKDIHEFFSHCGDPVHVEIIRSGE--CGGTAYVTFSNAYALETAV-LLSGATIVDQPVCIIRW   78 (242)
Q Consensus         4 ~~~tV~VsNLs~~~TE~dLrefFs~~G~I~~V~l~~~~~--~~~~AfV~F~~~~aA~tAl-~Lng~~l~g~~I~V~~a   78 (242)
                      ..++|||+|||+++++++|+++|+.||+|.++.+..+..  ..+||||+|.++++|..|+ .|||..|.|+++.|.+.
T Consensus        17 ~~~~lfV~nLp~~~te~~L~~~F~~~G~i~~~~~~~~~~~~~~g~afV~f~~~~~A~~Ai~~lng~~i~gr~~~v~~~   94 (101)
T d1x5oa1          17 DPTNLYISNLPLSMDEQELENMLKPFGQVISTRILRDSSGTSRGVGFARMESTEKCEAVIGHFNGKFIKTPPGVSAPT   94 (101)
T ss_dssp             CTTEEEEESCCTTCCHHHHHHTTTTTSCEEEEEEEECSSSCEEEEEEEEESCHHHHHHHHHHHBTCCCCCCTTSCCCS
T ss_pred             CCCEEEEeCCCCCCCHHHHHHHHhhcccccceeeecccccccccceeEEeCCHHHHHHHHHHhCCCEECCcCCccCCC
Confidence            347899999999999999999999999999999987643  2469999999999999995 79999999999888654

>d1wf2a_ d.58.7.1 (A:) Heterogeneous nuclear ribonucleoproteins C1/C2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: Heterogeneous nuclear ribonucleoproteins C1/C2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.59  E-value=2.4e-15  Score=113.07  Aligned_cols=71  Identities=24%  Similarity=0.240  Sum_probs=64.1

Q ss_pred             CcEEEEeCCCC-CCCHHHHHHHhccCCCceEEEEeecCCcCceEEEEecCHHHHHHHH-hcCCCeecCeeEEEEecCC
Q 026156            5 GYVAEVVGLSP-NATEKDIHEFFSHCGDPVHVEIIRSGECGGTAYVTFSNAYALETAV-LLSGATIVDQPVCIIRWGE   80 (242)
Q Consensus         5 ~~tV~VsNLs~-~~TE~dLrefFs~~G~I~~V~l~~~~~~~~~AfV~F~~~~aA~tAl-~Lng~~l~g~~I~V~~a~~   80 (242)
                      .++|||+||++ .+++++|+++|+.||+|.+|+|.     .+||||+|.++++|+.|+ .|||..|.|+.|.|..+.+
T Consensus        15 ~~~lfV~nL~~~~~~~~~L~~~F~~~G~i~~~~i~-----rg~aFV~f~~~~~A~~Ai~~lng~~~~g~~l~V~~a~~   87 (98)
T d1wf2a_          15 NSRVFIGNLNTLVVKKSDVEAIFSKYGKIVGCSVH-----KGFAFVQYVNERNARAAVAGEDGRMIAGQVLDINLAAE   87 (98)
T ss_dssp             CCCEEEEEECTTTCCHHHHHHSSTTSSCEEEEEEE-----TEEEEEEESSHHHHHHHHHTTTTCEETTEECEEEETTS
T ss_pred             CcEEEEeCCCcccCCHHHHHHHHhhcCCEEEEEEe-----CCeEEEEECCHHHHHHHHHHcCCCEECCEEEEEEECCC
Confidence            46799999975 68899999999999999999995     479999999999999994 7999999999999997653

>d2bz2a1 d.58.7.1 (A:35-113) Negative elongation factor E, NELF-E {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: Negative elongation factor E, NELF-E
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.59  E-value=2.1e-15  Score=108.73  Aligned_cols=72  Identities=18%  Similarity=0.208  Sum_probs=65.0

Q ss_pred             CCcEEEEeCCCCCCCHHHHHHHhccCCCceEEEEeecCCcCceEEEEecCHHHHHHH-HhcCCCeecCeeEEEEecCC
Q 026156            4 GGYVAEVVGLSPNATEKDIHEFFSHCGDPVHVEIIRSGECGGTAYVTFSNAYALETA-VLLSGATIVDQPVCIIRWGE   80 (242)
Q Consensus         4 ~~~tV~VsNLs~~~TE~dLrefFs~~G~I~~V~l~~~~~~~~~AfV~F~~~~aA~tA-l~Lng~~l~g~~I~V~~a~~   80 (242)
                      .++||||+||+  +||++|+++|+.||+|.+|.+.++   .++|||+|.++++|..| ..|||..|+|+.|+|..+.+
T Consensus         4 ~~~ti~V~~~~--~te~~L~~~F~~~G~I~~v~~~~~---~~~afV~f~~~~~A~~Ai~~lng~~~~g~~l~V~~a~~   76 (79)
T d2bz2a1           4 KGNTLYVYGED--MTPTLLRGAFSPFGNIIDLSMDPP---RNCAFVTYEKMESADQAVAELNGTQVESVQLKVNIARK   76 (79)
T ss_dssp             CCCEEEEECSS--CCHHHHHHHHSTTCCCSCEEEETT---TTEEEEECSSHHHHHHHHHHHTTCBCSSCBCEEEECCS
T ss_pred             CCCEEEEECCC--CCHHHHHHHHhccCccceeeeccC---CCEEEEEEcccHHHHHHHHHhCCCEECCEEEEEEEecC
Confidence            35799999985  899999999999999999999854   36999999999999999 58999999999999997754

>d1u2fa_ d.58.7.1 (A:) Splicing factor U2AF 65 KDa subunit {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: Splicing factor U2AF 65 KDa subunit
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.59  E-value=3.2e-17  Score=120.89  Aligned_cols=80  Identities=18%  Similarity=0.159  Sum_probs=68.9

Q ss_pred             cEEEEeCCCCCCCHHHHHHHhccCCCceEEEEeecC--------CcCceEEEEecCHHHHHHHHhcCCCeecCeeEEEEe
Q 026156            6 YVAEVVGLSPNATEKDIHEFFSHCGDPVHVEIIRSG--------ECGGTAYVTFSNAYALETAVLLSGATIVDQPVCIIR   77 (242)
Q Consensus         6 ~tV~VsNLs~~~TE~dLrefFs~~G~I~~V~l~~~~--------~~~~~AfV~F~~~~aA~tAl~Lng~~l~g~~I~V~~   77 (242)
                      ++|||+|||+.+||++|+++|+.||.|..+.+....        ...+||||+|.++++|+.|+.|||..+.|+.|+|..
T Consensus         2 RrlyVgNLp~~~te~~l~~~F~~~g~~~~~~~~~~~~~~~~~~~~~kg~afV~f~~~e~a~~a~~l~g~~~~Gr~l~V~r   81 (90)
T d1u2fa_           2 RRLYVGNIPFGITEEAMMDFFNAQMRLGGLTQAPGNPVLAVQINQDKNFAFLEFRSVDETTQAMAFDGIIFQGQSLKIRR   81 (90)
T ss_dssp             CEEEECSCCTTCCTTHHHHHHHHHHTTTTSCCSSSCSEEECCEETTTTEEEEEESSCTTTTTGGGGSSCCSSSSCCCCBC
T ss_pred             CEEEEcCCCCccchHHHHHHHHhhCcEEEEEEeccceeeecccCCCceEEEEEeCCHHHHHHHHhhCCcEECCEEEEECC
Confidence            689999999999999999999999999887765321        235799999999999999999999999999999987


Q ss_pred             cCCCCCCC
Q 026156           78 WGEYTDEP   85 (242)
Q Consensus        78 a~~~~~~~   85 (242)
                      ..++.++|
T Consensus        82 ~k~~~p~p   89 (90)
T d1u2fa_          82 PHDYQPLP   89 (90)
T ss_dssp             TTCCSCCC
T ss_pred             CCCCCCcc
Confidence            76665443

>d1wg4a_ d.58.7.1 (A:) Splicing factor, arginine/serine-rich 9 (SFRS9) {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: Splicing factor, arginine/serine-rich 9 (SFRS9)
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.59  E-value=1.7e-15  Score=113.92  Aligned_cols=74  Identities=18%  Similarity=0.285  Sum_probs=67.2

Q ss_pred             CcEEEEeCCCCCCCHHHHHHHhccCCCceEEEEeecCCcCceEEEEecCHHHHHHHH-hcCCCeecCeeEEEEecCCCC
Q 026156            5 GYVAEVVGLSPNATEKDIHEFFSHCGDPVHVEIIRSGECGGTAYVTFSNAYALETAV-LLSGATIVDQPVCIIRWGEYT   82 (242)
Q Consensus         5 ~~tV~VsNLs~~~TE~dLrefFs~~G~I~~V~l~~~~~~~~~AfV~F~~~~aA~tAl-~Lng~~l~g~~I~V~~a~~~~   82 (242)
                      .++|||+|||+.+++++|+++|+.||+|+++++.+    .++|||+|.++++|+.|+ .|||..|.|+.|.|......+
T Consensus        15 ~~~i~V~Nlp~~~~~~~L~~~F~~~G~v~~~~i~~----~g~afV~f~~~~~a~~Ai~~lng~~~~g~~i~v~~~~~~~   89 (98)
T d1wg4a_          15 DFRVLVSGLPPSGSWQDLKDHMREAGDVCYADVQK----DGMGMVEYLRKEDMEYALRKLDDTKFRSHEGETSYIRVYP   89 (98)
T ss_dssp             SCEEEEECCCSSCCHHHHHHHHTTSSCEEEEEEET----TTEEEEEESSHHHHHHHHHHHSSEEEECTTSCEEEEEEEC
T ss_pred             CCEEEEECCCCCCCHHHHHHHHHhhcccccccccc----cceEEEEECCHHHHHHHHHHhCCCEeCCeEEEEEEEecCC
Confidence            46899999999999999999999999999999974    369999999999999996 899999999999998765443

>d1wg1a_ d.58.7.1 (A:) Probable RNA-binding protein KIAA1579 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: Probable RNA-binding protein KIAA1579
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.59  E-value=3.6e-15  Score=109.77  Aligned_cols=73  Identities=15%  Similarity=0.162  Sum_probs=63.1

Q ss_pred             CCCcEEEEeCCCCCCCHHHHHHHhccCCCceEEEEeecCCcCceEEEEecCHHHHHHH-HhcCCCeecCeeEEEEecC
Q 026156            3 AGGYVAEVVGLSPNATEKDIHEFFSHCGDPVHVEIIRSGECGGTAYVTFSNAYALETA-VLLSGATIVDQPVCIIRWG   79 (242)
Q Consensus         3 ~~~~tV~VsNLs~~~TE~dLrefFs~~G~I~~V~l~~~~~~~~~AfV~F~~~~aA~tA-l~Lng~~l~g~~I~V~~a~   79 (242)
                      ++.++|||+|||+.++++||+++|+.|| +..+.+..   ..++|||+|.++++|+.| ..|||..|.|++|.|..+.
T Consensus         3 s~s~~i~V~nLp~~~t~~~l~~lF~~~G-~~~~~~~~---~kg~afV~f~~~~~A~~Ai~~ln~~~~~G~~l~V~~a~   76 (88)
T d1wg1a_           3 SGSSGILVKNLPQDSNCQEVHDLLKDYD-LKYCYVDR---NKRTAFVTLLNGEQAQNAIQMFHQYSFRGKDLIVQLQP   76 (88)
T ss_dssp             CCCCCEEEESCCSSCCHHHHHHHTCSSC-CCCEEEEG---GGTEEEECCSCHHHHHHHHHHHTTEEETTEEEEEEECC
T ss_pred             CCCCEEEEeCCCCccChHHHHHHHHhcC-ceeeeeec---cCCceEEEECCHHHHHHHHHHhCCCEECCEEEEEEEcC
Confidence            4567999999999999999999999999 44454433   246999999999999999 5899999999999999763

>d1nu4a_ d.58.7.1 (A:) Splicesomal U1A protein {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: Splicesomal U1A protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.58  E-value=1.3e-15  Score=112.50  Aligned_cols=74  Identities=20%  Similarity=0.322  Sum_probs=66.5

Q ss_pred             cEEEEeCCCCCCCHHHHHH----HhccCCCceEEEEeecCCcCceEEEEecCHHHHHHHH-hcCCCeecCeeEEEEecC
Q 026156            6 YVAEVVGLSPNATEKDIHE----FFSHCGDPVHVEIIRSGECGGTAYVTFSNAYALETAV-LLSGATIVDQPVCIIRWG   79 (242)
Q Consensus         6 ~tV~VsNLs~~~TE~dLre----fFs~~G~I~~V~l~~~~~~~~~AfV~F~~~~aA~tAl-~Lng~~l~g~~I~V~~a~   79 (242)
                      +||||+|||+.++++||++    +|+.||+|.+|.+.+.+...++|||+|.++++|..|+ .|||..|.|+.|.|..+.
T Consensus         4 ~tl~V~nLp~~~t~~dl~~~l~~~f~~~G~i~~i~~~~~~~~~g~afV~F~~~~~A~~A~~~~~~~~~~g~~l~v~~ak   82 (91)
T d1nu4a_           4 HTIYINNLNEKIKKDELKKSLHAIFSRFGQILDILVSRSLKMRGQAFVIFKEVSSATNALRSMQGFPFYDKPMRIQYAK   82 (91)
T ss_dssp             SEEEEESCCTTSCHHHHHHHHHHHHGGGSCEEEEECCHHHHHTTCEEEEESSHHHHHHHHHHHTTCEETTEECEEEECS
T ss_pred             CEEEEeCCCCCCCHHHHHHHHHHHhcccccccceEEeeeccCCCceEEEECCHHHHHHHHHHhCCCEECCEEEEEEEeC
Confidence            7999999999999999864    6899999999998765445679999999999999995 799999999999998764

>d2adca2 d.58.7.1 (A:444-531) Polypyrimidine tract-binding protein {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: Polypyrimidine tract-binding protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.57  E-value=7.6e-15  Score=107.41  Aligned_cols=76  Identities=13%  Similarity=0.134  Sum_probs=66.2

Q ss_pred             CCCcEEEEeCCCCCCCHHHHHHHhccCCCceEEEEeecCCcCceEEEEecCHHHHHHHH-hcCCCee-cCeeEEEEecC
Q 026156            3 AGGYVAEVVGLSPNATEKDIHEFFSHCGDPVHVEIIRSGECGGTAYVTFSNAYALETAV-LLSGATI-VDQPVCIIRWG   79 (242)
Q Consensus         3 ~~~~tV~VsNLs~~~TE~dLrefFs~~G~I~~V~l~~~~~~~~~AfV~F~~~~aA~tAl-~Lng~~l-~g~~I~V~~a~   79 (242)
                      |-.++|||+|||+.+|+++|+++|+.||.|..+.+...+. .++|||+|+++++|..|+ .|+|..| +|+.|+|..+.
T Consensus         8 pPs~tL~V~NLp~~~te~~l~~~F~~~G~v~~~~~~~~~~-~~~afV~f~~~~~A~~A~~~l~~~~i~~g~~l~v~~sk   85 (88)
T d2adca2           8 PPSATLHLSNIPPSVSEEDLKVLFSSNGGVVKGFKFFQKD-RKMALIQMGSVEEAVQALIDLHNHDLGENHHLRVSFSK   85 (88)
T ss_dssp             CSCSEEEEECCCTTCCHHHHHHHHHTTSCCEEEEEECSSS-TTCEEEEESSHHHHHHHHHHHTTCBSSSSCBCEEEECS
T ss_pred             CCCCEEEEECCCCCCCHHHHHHHhhccCCEEEEEEeeecc-cceeEEEECCHHHHHHHHHhccCCEecCCCEEEEEeCC
Confidence            3357999999999999999999999999999888765433 469999999999999995 8999998 58999998653

>d2cqpa1 d.58.7.1 (A:917-1002) RNA-binding protein 12 {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: RNA-binding protein 12
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.56  E-value=3.6e-15  Score=108.62  Aligned_cols=75  Identities=20%  Similarity=0.190  Sum_probs=64.3

Q ss_pred             CCCcEEEEeCCCCCCCHHHHHHHhccCCCceE-EEEeecCC--cCceEEEEecCHHHHHHHH-hcCCCeecCeeEEEEe
Q 026156            3 AGGYVAEVVGLSPNATEKDIHEFFSHCGDPVH-VEIIRSGE--CGGTAYVTFSNAYALETAV-LLSGATIVDQPVCIIR   77 (242)
Q Consensus         3 ~~~~tV~VsNLs~~~TE~dLrefFs~~G~I~~-V~l~~~~~--~~~~AfV~F~~~~aA~tAl-~Lng~~l~g~~I~V~~   77 (242)
                      |..++|||+|||++++++||++||+.||.|.. +.+..+..  ..++|||+|.++++|+.|+ .|||..|+|++|+|..
T Consensus         7 p~~~~l~v~nLp~~~~~~di~~~F~~~~~~~~~~~~~~~~~g~~~G~afV~f~~~e~a~~Ai~~l~~~~l~gr~i~v~l   85 (86)
T d2cqpa1           7 PGPTIIKVQNMPFTVSIDEILDFFYGYQVIPGSVCLKYNEKGMPTGEAMVAFESRDEATAAVIDLNDRPIGSRKVKLVL   85 (86)
T ss_dssp             CSSEEEEEESCCTTCCHHHHHHHTTTSCCCTTTCEEEECSSSCEEEEEEEEESCHHHHHHHHHHTTTCEETTEECEEEE
T ss_pred             CCCCEEEEECCCCCCCHHHHHHHHhhcccceeEEEEEeCCCCCcceEEEEEEcCcHHHHHHHHHcCCCEECCEEEEEEE
Confidence            44578999999999999999999999999976 45554322  3469999999999999995 7999999999999975

>d2cqha1 d.58.7.1 (A:2-81) IGF-II mRNA-binding protein 2 isoform A {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: IGF-II mRNA-binding protein 2 isoform A
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.55  E-value=3.6e-15  Score=107.80  Aligned_cols=72  Identities=19%  Similarity=0.248  Sum_probs=64.4

Q ss_pred             cEEEEeCCCCCCCHHHHHHHhccCCCceEEEEeecCCcCceEEEEecCHHHHHHHH-hcCCC-eecCeeEEEEecCC
Q 026156            6 YVAEVVGLSPNATEKDIHEFFSHCGDPVHVEIIRSGECGGTAYVTFSNAYALETAV-LLSGA-TIVDQPVCIIRWGE   80 (242)
Q Consensus         6 ~tV~VsNLs~~~TE~dLrefFs~~G~I~~V~l~~~~~~~~~AfV~F~~~~aA~tAl-~Lng~-~l~g~~I~V~~a~~   80 (242)
                      ++|||+|||+++|+++|+++|+.||.|.++.+...   .++|||+|.++++|..|+ .|||. .|.|++|.|..+.+
T Consensus         2 n~l~V~nLp~~~te~~L~~~F~~~G~i~~~~~~~~---rg~aFV~f~~~~~A~~Ai~~lng~~~~~G~~i~V~~a~~   75 (80)
T d2cqha1           2 NKLYIGNLSPAVTADDLRQLFGDRKLPLAGQVLLK---SGYAFVDYPDQNWAIRAIETLSGKVELHGKIMEVDYSVS   75 (80)
T ss_dssp             CCEEEECCCTTCCHHHHHHHHHHTTCCCSSCEEEE---TTEEEECCSCHHHHHHHHHHHTTTCEETTEECEEEECCC
T ss_pred             CEEEEECCCCCCCHHHHHHHHHHhCcEEEeEEecc---cceEEEEECCHHHHHHHHHHhCCCeEECCEEEEEEEcCC
Confidence            36999999999999999999999999988877764   469999999999999995 79996 69999999997643

>d2b0ga1 d.58.7.1 (A:1-83) Splicesomal U1A protein {Drosophila melanogaster [TaxId: 7227]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: Splicesomal U1A protein
species: Drosophila melanogaster [TaxId: 7227]

Probab=99.55  E-value=9.4e-15  Score=106.05  Aligned_cols=73  Identities=16%  Similarity=0.190  Sum_probs=64.9

Q ss_pred             CCcEEEEeCCCCCCCHHHHHHHhccCCCceEEEEeecCCcCceEEEEecCHHHHHHH-HhcCCCeec-CeeEEEEec
Q 026156            4 GGYVAEVVGLSPNATEKDIHEFFSHCGDPVHVEIIRSGECGGTAYVTFSNAYALETA-VLLSGATIV-DQPVCIIRW   78 (242)
Q Consensus         4 ~~~tV~VsNLs~~~TE~dLrefFs~~G~I~~V~l~~~~~~~~~AfV~F~~~~aA~tA-l~Lng~~l~-g~~I~V~~a   78 (242)
                      -.++|||+|||+.+|+++|+++|+.||.|.+|++.++.  .++|||+|.++++|..| ..|+|..|. |++|.|.-+
T Consensus         7 P~~tl~V~nLp~~~t~~~l~~~f~~~G~i~~v~~~~~~--~g~afV~f~~~~~A~~A~~~l~g~~~~~~~~i~v~~a   81 (83)
T d2b0ga1           7 PNQILFLTNLPEETNEMMLSMLFNQFPGFKEVRLVPNR--HDIAFVEFTTELQSNAAKEALQGFKITPTHAMKITFA   81 (83)
T ss_dssp             CCSEEEEESCCTTCCHHHHHHHHTTSTTEEEEEECTTT--CSCEEEEESSHHHHHHHHHHHTTCBSSTTCBCEEEEC
T ss_pred             CCCEEEEECCCCCCCHHHHHhhhccCccEEEeeeeccc--ceeEEEecCCHHHHHHHHHHhCCcEeCCCcEEEEEEe
Confidence            34799999999999999999999999999999998653  46999999999999999 579999985 688998754

>d1x4ea1 d.58.7.1 (A:8-79) RNA-binding motif, single-stranded-interacting protein 2, RBMS2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: RNA-binding motif, single-stranded-interacting protein 2, RBMS2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.55  E-value=1.3e-15  Score=107.43  Aligned_cols=67  Identities=25%  Similarity=0.404  Sum_probs=60.6

Q ss_pred             EEEeCCCCCCCHHHHHHHhccCCCceEEEEeecCC---cCceEEEEecCHHHHHHHH-hcCCCeecCeeEE
Q 026156            8 AEVVGLSPNATEKDIHEFFSHCGDPVHVEIIRSGE---CGGTAYVTFSNAYALETAV-LLSGATIVDQPVC   74 (242)
Q Consensus         8 V~VsNLs~~~TE~dLrefFs~~G~I~~V~l~~~~~---~~~~AfV~F~~~~aA~tAl-~Lng~~l~g~~I~   74 (242)
                      |||+|||+++|+++|+++|+.||.|..+.+..+..   ..++|||+|.++++|+.|+ .|||..|.|+.|+
T Consensus         1 lyV~nLp~~~te~~l~~~F~~~G~v~~~~~~~~~~~~~~~g~afV~f~~~~~A~~Ai~~lng~~~~Gr~~k   71 (72)
T d1x4ea1           1 LYIRGLQPGTTDQDLVKLCQPYGKIVSTKAILDKTTNKCKGYGFVDFDSPSAAQKAVTALKASGVQAQMAK   71 (72)
T ss_dssp             EEEESCCTTCCHHHHHTTSTTTSCEEEEEEECCSSSCSCCSEEEEEESCHHHHHHHHHHHHHHTCCEESCC
T ss_pred             CEEeCCCCcCCHHHHHHHHhhhccccccccccccccccccceeEEEECCHHHHHHHHHHhCCCEECCEECc
Confidence            79999999999999999999999999999987643   3479999999999999995 8999999998763

>d1wela1 d.58.7.1 (A:412-523) RNA-binding protein 12 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: RNA-binding protein 12
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.54  E-value=2.5e-15  Score=115.25  Aligned_cols=74  Identities=19%  Similarity=0.266  Sum_probs=64.4

Q ss_pred             CcEEEEeCCCCCCCHHHHHHHhccCCCceEEEEeec---CCcCceEEEEecCHHHHHHHHhcCCCeecCeeEEEEec
Q 026156            5 GYVAEVVGLSPNATEKDIHEFFSHCGDPVHVEIIRS---GECGGTAYVTFSNAYALETAVLLSGATIVDQPVCIIRW   78 (242)
Q Consensus         5 ~~tV~VsNLs~~~TE~dLrefFs~~G~I~~V~l~~~---~~~~~~AfV~F~~~~aA~tAl~Lng~~l~g~~I~V~~a   78 (242)
                      .++|||+|||+++|+++|++||+.||.|..+.++..   +...++|||+|.++++|+.|+.|||..|+|+.|.|.++
T Consensus        18 ~~~i~v~nLp~~~t~~di~~~F~~~g~~~~~~~~~~~~~g~~~G~afVeF~~~e~a~~al~~~~~~i~gR~i~V~~~   94 (112)
T d1wela1          18 GFCVYLKGLPFEAENKHVIDFFKKLDIVEDSIYIAYGPNGKATGEGFVEFRNEADYKAALCRHKQYMGNRFIQVHPI   94 (112)
T ss_dssp             CCEEEEECCCTTCCHHHHHHHSCSSCBCTTTCEEEECTTSSEEEEEEEEBSSSHHHHHHHTSCSBCSTTSCBEEEEE
T ss_pred             CeEEEEecCCCcCcHHHHhhHHhhccccccceeeecCcccceeeEEEEEECCHHHHHHHHHcCCCcCCCEEEEEEEc
Confidence            479999999999999999999999999976444322   22447999999999999999999999999999999875

>d1fjca_ d.58.7.1 (A:) Nucleolin {Golden hamster (Mesocricetus auratus) [TaxId: 10036]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: Nucleolin
species: Golden hamster (Mesocricetus auratus) [TaxId: 10036]

Probab=99.53  E-value=7.6e-15  Score=109.31  Aligned_cols=75  Identities=27%  Similarity=0.299  Sum_probs=65.0

Q ss_pred             CCcEEEEeCCCCCCCHHHHHHHhccCCCceEEEEeecCCcCceEEEEecCHHHHHHHH-hcCCCeecCeeEEEEecCC
Q 026156            4 GGYVAEVVGLSPNATEKDIHEFFSHCGDPVHVEIIRSGECGGTAYVTFSNAYALETAV-LLSGATIVDQPVCIIRWGE   80 (242)
Q Consensus         4 ~~~tV~VsNLs~~~TE~dLrefFs~~G~I~~V~l~~~~~~~~~AfV~F~~~~aA~tAl-~Lng~~l~g~~I~V~~a~~   80 (242)
                      ..++|||+|||+++|+++|+++|+.||.|..+...  +...++|||+|.+.++|+.|+ .|||..|+|++|.|..+.+
T Consensus        15 ~~~~l~V~nL~~~~te~~l~~~F~~~g~v~~~~~~--~~~~~~afV~f~~~~~A~~A~~~l~~~~~~gr~i~V~~a~~   90 (96)
T d1fjca_          15 AARTLLAKNLSFNITEDELKEVFEDALEIRLVSQD--GKSKGIAYIEFKSEADAEKNLEEKQGAEIDGRSVSLYYTGE   90 (96)
T ss_dssp             GGGEEEEESCCSSCCHHHHHHHHCSEEEECCEEET--TEEEEEEEEEESSHHHHHHHHHHTTEEEETTEEEEEEECSS
T ss_pred             CCCEEEEeCCCCCCCHHHHHHHHHhcccceeeeec--CccccEEEEEeCCHHHHHHHHHHcCCCEECCEEEEEEEeCC
Confidence            34799999999999999999999999998776532  223479999999999999995 7999999999999997643

>d2cq1a1 d.58.7.1 (A:51-138) Polypyrimidine tract-binding protein 2, PTBP2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: Polypyrimidine tract-binding protein 2, PTBP2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.52  E-value=3.5e-14  Score=103.90  Aligned_cols=72  Identities=17%  Similarity=0.205  Sum_probs=64.8

Q ss_pred             CcEEEEeCCCCCCCHHHHHHHhccCCCceEEEEeecCCcCceEEEEecCHHHHHHHH---hcCCCeecCeeEEEEecC
Q 026156            5 GYVAEVVGLSPNATEKDIHEFFSHCGDPVHVEIIRSGECGGTAYVTFSNAYALETAV---LLSGATIVDQPVCIIRWG   79 (242)
Q Consensus         5 ~~tV~VsNLs~~~TE~dLrefFs~~G~I~~V~l~~~~~~~~~AfV~F~~~~aA~tAl---~Lng~~l~g~~I~V~~a~   79 (242)
                      .++|||+|||+.+++++|+++|+.||.|.+|++.++   .++|||+|.++++|..|+   .+++..|.|++|.|..+.
T Consensus         8 s~~l~V~nLp~~~t~~~L~~~f~~~G~i~~v~~~~~---~~~afV~f~~~e~A~~a~~~~~~~~~~~~g~~l~v~~sk   82 (88)
T d2cq1a1           8 SRVLHIRKLPGEVTETEVIALGLPFGKVTNILMLKG---KNQAFLELATEEAAITMVNYYSAVTPHLRNQPIYIQYSN   82 (88)
T ss_dssp             CSEEEEESCCTTCCHHHHHHTTTTTSCEEEEEEETT---TTEEEEEESSHHHHHHHHHHHHHSCCEETTEECEEEECS
T ss_pred             CCEEEEeCCCCCCCHHHHHHHHhccccccccccccc---ceEEEEEeCCHHHHHHHHHHHccCCCccCCCEEEEEECC
Confidence            379999999999999999999999999999999865   369999999999999994   468899999999998653

>d1whya_ d.58.7.1 (A:) Putative RNA-binding protein 15B, Rbm15b {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: Putative RNA-binding protein 15B, Rbm15b
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.51  E-value=2.8e-14  Score=106.50  Aligned_cols=72  Identities=17%  Similarity=0.207  Sum_probs=64.7

Q ss_pred             CcEEEEeCCCCCCCHHHHHHHhccCCCceEEEEeecCCcCceEEEEecCHHHHHHH-HhcCCCeecC--eeEEEEecC
Q 026156            5 GYVAEVVGLSPNATEKDIHEFFSHCGDPVHVEIIRSGECGGTAYVTFSNAYALETA-VLLSGATIVD--QPVCIIRWG   79 (242)
Q Consensus         5 ~~tV~VsNLs~~~TE~dLrefFs~~G~I~~V~l~~~~~~~~~AfV~F~~~~aA~tA-l~Lng~~l~g--~~I~V~~a~   79 (242)
                      .++|||+|||+++++++|+++|+.||+|..|++.++   .++|||+|.++++|..| ..|||..|.|  ++|+|..+.
T Consensus        17 s~tl~V~nLp~~~t~~~l~~~f~~~G~i~~~~~~~~---~~~afV~f~~~~~A~~A~~~l~~~~i~g~~~~l~v~~ak   91 (97)
T d1whya_          17 TTRLWVGGLGPNTSLAALAREFDRFGSIRTIDHVKG---DSFAYIQYESLDAAQAACAKMRGFPLGGPDRRLRVDFAK   91 (97)
T ss_dssp             CSCEEEECCCSSCCHHHHHHHHHTTSCEEEEEECSS---SCCEEEEESSHHHHHHHHHHHTTCBCSSSSCBCEEEECC
T ss_pred             CCEEEEcCCCCCCCHHHHHHHHHhhcccceEeeecc---ccEEEeccCCHHHHHHHHHHhCCCEeCCCceEEEEEeCC
Confidence            379999999999999999999999999999999864   36999999999999999 5899999987  478888654

>d2adba1 d.58.7.1 (A:177-284) Polypyrimidine tract-binding protein {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: Polypyrimidine tract-binding protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.50  E-value=2.3e-14  Score=108.87  Aligned_cols=74  Identities=18%  Similarity=0.133  Sum_probs=65.7

Q ss_pred             cEEEEeCCCCCCCHHHHHHHhccCCCceEEEEeecCCcCceEEEEecCHHHHHHH-HhcCCCee--cCeeEEEEecCC
Q 026156            6 YVAEVVGLSPNATEKDIHEFFSHCGDPVHVEIIRSGECGGTAYVTFSNAYALETA-VLLSGATI--VDQPVCIIRWGE   80 (242)
Q Consensus         6 ~tV~VsNLs~~~TE~dLrefFs~~G~I~~V~l~~~~~~~~~AfV~F~~~~aA~tA-l~Lng~~l--~g~~I~V~~a~~   80 (242)
                      .+|||+||++.+||++|+++|+.||.|.+|.+..++. .++|||+|.++++|+.| ..|||..|  .++.|.|..+..
T Consensus         8 ~~v~V~NL~~~vte~~L~~~F~~~G~i~~~~i~~~~~-~g~aFV~f~~~e~A~~Ai~~ln~~~l~~~~~~l~v~~s~~   84 (108)
T d2adba1           8 LRIIVENLFYPVTLDVLHQIFSKFGTVLKIITFTKNN-QFQALLQYADPVSAQHAKLSLDGQNIYNACCTLRIDFSKL   84 (108)
T ss_dssp             EEEESCSCCSTTHHHHHHHHHTTTSCEEEEEEEEETT-EEEEEEEESCHHHHHHHHHHHHSCCSSTTCCCCEEEECSS
T ss_pred             EEEEEeCcCCCCCHHHHHHHHccCCcEEEEEEEeeCC-CCeEEEEECCHHHHHHHHHHHCCCEeccCCcEEEEEecCC
Confidence            5799999999999999999999999999999987653 46999999999999999 58999998  577888876543

>d2disa1 d.58.7.1 (A:8-103) Hypothetical protein FLJ20273 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: Hypothetical protein FLJ20273
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.50  E-value=2.9e-14  Score=105.93  Aligned_cols=76  Identities=14%  Similarity=0.128  Sum_probs=64.6

Q ss_pred             CcEEEEeCCCCCCCHHHHHHHhccCCC-ceEEEEeecCC----cCceEEEEecCHHHHHHHH-hcC--CCeecCeeEEEE
Q 026156            5 GYVAEVVGLSPNATEKDIHEFFSHCGD-PVHVEIIRSGE----CGGTAYVTFSNAYALETAV-LLS--GATIVDQPVCII   76 (242)
Q Consensus         5 ~~tV~VsNLs~~~TE~dLrefFs~~G~-I~~V~l~~~~~----~~~~AfV~F~~~~aA~tAl-~Ln--g~~l~g~~I~V~   76 (242)
                      ++.|||+|||+.+++++|+++|+.||+ |.+|.+..+..    ..++|||+|.++++|..|+ .|+  +..++|++|.|.
T Consensus         1 n~rLyV~nLp~~~te~~l~~~f~~~g~~i~~v~~~~~~~~~~~~rg~aFV~F~~~~~A~~Ai~~l~~~~~~~~g~~i~V~   80 (96)
T d2disa1           1 NCRLFIGGIPKMKKREEILEEIAKVTEGVLDVIVYASAADKMKNRGFAFVEYESHRAAAMARRKLMPGRIQLWGHQIAVD   80 (96)
T ss_dssp             SEEEEEECCCTTSCHHHHHHHHHHHSTTEEEEECCSSSCTTTTTCCEEEEEESSHHHHHHHHTTTTTCCSCBTTBCCEEE
T ss_pred             CCEEEEcCCCCcCCHHHHHHHHHHhCCcceEEEEeeeccccccCCCeEEEEEcCHHHHHHHHHHHcCCCeEECCEEEEEE
Confidence            368999999999999999999999996 99999987532    3469999999999999994 564  456689999999


Q ss_pred             ecCC
Q 026156           77 RWGE   80 (242)
Q Consensus        77 ~a~~   80 (242)
                      .+.+
T Consensus        81 ~A~p   84 (96)
T d2disa1          81 WAEP   84 (96)
T ss_dssp             ESCS
T ss_pred             EcCC
Confidence            7754

>d2cpxa1 d.58.7.1 (A:291-392) RNA-binding protein 41, RBM41 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: RNA-binding protein 41, RBM41
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.50  E-value=7.6e-15  Score=109.78  Aligned_cols=76  Identities=25%  Similarity=0.307  Sum_probs=67.6

Q ss_pred             CcEEEEeCCCCCCCHHHHHHHhccCCCceEEEEeec---CCcCceEEEEecCHHHHHHHH-hcCCCeecCeeEEEEecCC
Q 026156            5 GYVAEVVGLSPNATEKDIHEFFSHCGDPVHVEIIRS---GECGGTAYVTFSNAYALETAV-LLSGATIVDQPVCIIRWGE   80 (242)
Q Consensus         5 ~~tV~VsNLs~~~TE~dLrefFs~~G~I~~V~l~~~---~~~~~~AfV~F~~~~aA~tAl-~Lng~~l~g~~I~V~~a~~   80 (242)
                      .++|||+|||+.+++++|+++|+.||.|..+.+..+   +...++|||+|.++++|..|+ .|||..|.|++|.|..+.+
T Consensus        18 s~tl~V~nLp~~~t~~~l~~~f~~~G~v~~~~~~~~~~~g~~~g~~fV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~ak~   97 (102)
T d2cpxa1          18 NKVLYLKNLSPRVTERDLVSLFARFQEKKGPPIQFRMMTGRMRGQAFITFPNKEIAWQALHLVNGYKLYGKILVIEFGKN   97 (102)
T ss_dssp             CSEEEEECCCTTCCHHHHHHHTHHHHHSSSSCCEEEEECSSSCSEEEEECSSHHHHHHHHHHSTTCBCSSCBCEEEECCC
T ss_pred             CCEEEEeCCCCCCCHHHHHHHHhhccceeeEEeecccccccccccceEEeccHHHHHHHHHHhCCCEECCEEEEEEeCCC
Confidence            378999999999999999999999999999988754   234579999999999999995 8999999999999987643

>d1wexa_ d.58.7.1 (A:) Heterogeneous nuclear ribonucleoprotein L-like {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: Heterogeneous nuclear ribonucleoprotein L-like
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.50  E-value=1e-13  Score=104.57  Aligned_cols=73  Identities=22%  Similarity=0.175  Sum_probs=64.8

Q ss_pred             CcEEEEeCCCCCCCHHHHHHHhccCCCceEEEEeecCCcCceEEEEecCHHHHHHHH-h--cCCCeecCeeEEEEecCC
Q 026156            5 GYVAEVVGLSPNATEKDIHEFFSHCGDPVHVEIIRSGECGGTAYVTFSNAYALETAV-L--LSGATIVDQPVCIIRWGE   80 (242)
Q Consensus         5 ~~tV~VsNLs~~~TE~dLrefFs~~G~I~~V~l~~~~~~~~~AfV~F~~~~aA~tAl-~--Lng~~l~g~~I~V~~a~~   80 (242)
                      .++|||+|||+.+||++|+++|+.||.|.+|.+.++   +++|||+|.++++|..|+ .  .++..++|++|.|..+..
T Consensus        15 s~~l~v~nlp~~~te~~l~~~F~~fG~I~~~~~~~~---k~~AfV~f~~~e~A~~ai~~~~~~~~~~~g~~l~v~~s~~   90 (104)
T d1wexa_          15 SPVVHVRGLCESVVEADLVEALEKFGTICYVMMMPF---KRQALVEFENIDSAKECVTFAADVPVYIAGQQAFFNYSTS   90 (104)
T ss_dssp             CSEEEEESCCSSCCHHHHHHHHTTTSCEEEEEEETT---TTEEEEEESSHHHHHHHHHHHHHSCCBSSSSBCEEEECSS
T ss_pred             CCEEEEeCCCCCCCHHHHHHhhhhcccceEEEEEec---ceeEEEEeCCHHHHHHHHHHHcCCCcEEeeEEEEEEEcCC
Confidence            478999999999999999999999999999999864   469999999999999994 3  467789999999987644

>d1x4fa1 d.58.7.1 (A:8-106) Matrin 3 {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: Matrin 3
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.48  E-value=3.1e-14  Score=106.91  Aligned_cols=74  Identities=14%  Similarity=0.144  Sum_probs=66.2

Q ss_pred             CcEEEEeCCCCC-CCHHHHHHHhccCCCceEEEEeecCCcCceEEEEecCHHHHHHHH---hcCCCeecCeeEEEEecCC
Q 026156            5 GYVAEVVGLSPN-ATEKDIHEFFSHCGDPVHVEIIRSGECGGTAYVTFSNAYALETAV---LLSGATIVDQPVCIIRWGE   80 (242)
Q Consensus         5 ~~tV~VsNLs~~-~TE~dLrefFs~~G~I~~V~l~~~~~~~~~AfV~F~~~~aA~tAl---~Lng~~l~g~~I~V~~a~~   80 (242)
                      .++|||+|||.. +|+++|+++|+.||+|.+|.+.++   .++|||+|.++++|..|+   .+++..|.|+.|.|..+..
T Consensus        18 ~~~l~v~nLp~~~~te~~l~~~F~~fG~V~~v~~~~~---k~~afV~f~~~~~A~~Ai~~~~~~~~~~~gr~l~V~~s~~   94 (99)
T d1x4fa1          18 GRVIHLSNLPHSGYSDSAVLKLAEPYGKIKNYILMRM---KSQAFIEMETREDAMAMVDHCLKKALWFQGRCVKVDLSEK   94 (99)
T ss_dssp             CCEEEEESCCCSSCCSHHHHTTTTTTSCCSEEEEETT---TTEEEEECSSHHHHHHHHHHHHHSCCCSSSSCCEEEEECS
T ss_pred             CCEEEEeCCcCCccCHHHHHhhhccccceeEEEEeec---CCcEEEEecchHHHHHHHHHHhcCCceECCEEEEEEEcCC
Confidence            479999999975 899999999999999999999865   369999999999999995   5899999999999997754


Q ss_pred             C
Q 026156           81 Y   81 (242)
Q Consensus        81 ~   81 (242)
                      +
T Consensus        95 ~   95 (99)
T d1x4fa1          95 Y   95 (99)
T ss_dssp             C
T ss_pred             c
Confidence            4

>d1wi6a1 d.58.7.1 (A:69-143) Ribonucleoprotein PTB-binding 1, Raver-1 {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: Ribonucleoprotein PTB-binding 1, Raver-1
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.48  E-value=7e-14  Score=99.91  Aligned_cols=68  Identities=19%  Similarity=0.260  Sum_probs=60.5

Q ss_pred             EEEeCCCCCCCHHHHHHHhccCCCceEEEEeecCCcCceEEEEecCHHHHHHH-HhcCCCeecCeeEEEEecC
Q 026156            8 AEVVGLSPNATEKDIHEFFSHCGDPVHVEIIRSGECGGTAYVTFSNAYALETA-VLLSGATIVDQPVCIIRWG   79 (242)
Q Consensus         8 V~VsNLs~~~TE~dLrefFs~~G~I~~V~l~~~~~~~~~AfV~F~~~~aA~tA-l~Lng~~l~g~~I~V~~a~   79 (242)
                      |||+|||+++++++|+++|+.|| +..+.+.+   ..++|||+|.+++.|+.| ..|||..+.|++|.|..+.
T Consensus         1 i~V~nLp~~~t~~~l~~~F~~~g-~~~~~~~~---~~g~afv~f~~~~~A~~Ai~~ln~~~~~g~~l~V~~a~   69 (75)
T d1wi6a1           1 ILIRGLPGDVTNQEVHDLLSDYE-LKYCFVDK---YKGTAFVTLLNGEQAEAAINTFHQSRLRERELSVQLQP   69 (75)
T ss_dssp             EEEECCCTTCCHHHHHHHTTTSC-EEEEEEET---TTTEEEEEESSHHHHHHHHHHHTTEESSSCEEEEEECC
T ss_pred             CEEeCCCCcCCHHHHHHHHhccc-ccceeecc---cceeEEEEECCHHHHHHHHHHhCCccCCCCEEEEEEeC
Confidence            79999999999999999999999 66666543   357999999999999999 4899999999999999764

>d1u1qa_ d.58.7.1 (A:) Nuclear ribonucleoprotein A1 (RNP A1, UP1) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: Nuclear ribonucleoprotein A1 (RNP A1, UP1)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.47  E-value=1.4e-13  Score=111.44  Aligned_cols=76  Identities=18%  Similarity=0.247  Sum_probs=68.7

Q ss_pred             CCcEEEEeCCCCCCCHHHHHHHhccCCCceEEEEeecCC---cCceEEEEecCHHHHHHHHhcCCCeecCeeEEEEecC
Q 026156            4 GGYVAEVVGLSPNATEKDIHEFFSHCGDPVHVEIIRSGE---CGGTAYVTFSNAYALETAVLLSGATIVDQPVCIIRWG   79 (242)
Q Consensus         4 ~~~tV~VsNLs~~~TE~dLrefFs~~G~I~~V~l~~~~~---~~~~AfV~F~~~~aA~tAl~Lng~~l~g~~I~V~~a~   79 (242)
                      ..++|||+|||+.+|+++|+++|+.||.|..+.+..+..   ..++|||+|.++++|..|+.+++..|.|+.|.|.++.
T Consensus        96 ~~~~i~V~~lp~~~te~~L~~~f~~~G~v~~~~i~~~~~~~~~~g~~fV~f~~~e~A~~Al~~~~~~~~G~~i~V~~A~  174 (183)
T d1u1qa_          96 TVKKIFVGGIKEDTEEHHLRDYFEQYGKIEVIEIMTDRGSGKKRGFAFVTFDDHDSVDKIVIQKYHTVNGHNCEVRKAL  174 (183)
T ss_dssp             CCSEEEEECCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESCHHHHHHHHTSSCEEETTEEEEEEECC
T ss_pred             ccceeEEccCCCcCCHHHHhhhhccCCceeeeeeecccccCccceeEEEEECCHHHHHHHHHhCCCeECCEEEEEEecC
Confidence            347999999999999999999999999999999997644   2369999999999999999899999999999998653

>d1x4da1 d.58.7.1 (A:8-96) Matrin 3 {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: Matrin 3
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.46  E-value=9e-14  Score=102.52  Aligned_cols=75  Identities=13%  Similarity=0.181  Sum_probs=65.7

Q ss_pred             CCcEEEEeCCCCC-CCHHHHHHHhccCCCceEEEEeecCCcCceEEEEecCHHHHHHHH---hcCCCeecCeeEEEEecC
Q 026156            4 GGYVAEVVGLSPN-ATEKDIHEFFSHCGDPVHVEIIRSGECGGTAYVTFSNAYALETAV---LLSGATIVDQPVCIIRWG   79 (242)
Q Consensus         4 ~~~tV~VsNLs~~-~TE~dLrefFs~~G~I~~V~l~~~~~~~~~AfV~F~~~~aA~tAl---~Lng~~l~g~~I~V~~a~   79 (242)
                      ..++|||+|||.. +|++||+++|+.||+|.+|.+.++.   ++|||+|++.++|..|+   ..++..+.|++|.|..+.
T Consensus         7 ~sr~v~v~nl~~~~~t~~eL~~lF~~fG~I~~i~i~~~k---~~afV~f~~~~~A~~A~~~l~~~~~~~~gr~l~V~~s~   83 (89)
T d1x4da1           7 TRRVVHIMDFQRGKNLRYQLLQLVEPFGVISNHLILNKI---NEAFIEMATTEDAQAAVDYYTTTPALVFGKPVRVHLSQ   83 (89)
T ss_dssp             CCCEEEEESCCCSSSHHHHHHTTTGGGSCEEEEEECSSS---SCEEEEESSHHHHHHHHHHHHHSCCEETTEECEEEEEC
T ss_pred             CCcEEEEECCCCCcCCHHHHHHHHHhhCCeEEEEeeccc---eEEEEEEcchhhHHHHHHHHhhCCCccCCceEEEEECC
Confidence            3479999999986 8999999999999999999998653   58999999999999994   457889999999999765


Q ss_pred             CC
Q 026156           80 EY   81 (242)
Q Consensus        80 ~~   81 (242)
                      .+
T Consensus        84 ~~   85 (89)
T d1x4da1          84 KY   85 (89)
T ss_dssp             CC
T ss_pred             Cc
Confidence            43

>d1wwha1 d.58.7.1 (A:169-249) Nucleoporin 35 {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: Nucleoporin 35
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.45  E-value=9.5e-14  Score=101.27  Aligned_cols=72  Identities=10%  Similarity=0.130  Sum_probs=62.5

Q ss_pred             CcEEEEeCCCCCCCHHHHHHHhccCCCceEEEEeecCCcCceEEEEecCHHHHHHHHhcCCCeecCee-EEEEecCC
Q 026156            5 GYVAEVVGLSPNATEKDIHEFFSHCGDPVHVEIIRSGECGGTAYVTFSNAYALETAVLLSGATIVDQP-VCIIRWGE   80 (242)
Q Consensus         5 ~~tV~VsNLs~~~TE~dLrefFs~~G~I~~V~l~~~~~~~~~AfV~F~~~~aA~tAl~Lng~~l~g~~-I~V~~a~~   80 (242)
                      ++.|+|.|+||.++++.| ++|+.||+|.++++.++   .+++||+|.++++|+.|+.+||..|+|+. |.|.|+.+
T Consensus         4 ~~wV~V~G~p~~~~~~il-~~F~~~G~I~~~~~~~~---~~~~fV~f~~~~~A~~Al~~nG~~~~g~~~vgV~~~~~   76 (81)
T d1wwha1           4 DTWVTVFGFPQASASYIL-LQFAQYGNILKHVMSNT---GNWMHIRYQSKLQARKALSKDGRIFGESIMIGVKPCID   76 (81)
T ss_dssp             GGEEEEECCCGGGHHHHH-HHHHTTSCEEEEEECSS---SSEEEEEESSHHHHHHHHTTTTCEETTTEECEEEECCC
T ss_pred             ccEEEEECCChHHHHHHH-HHHHhhhhhheEEecCC---CCEEEEEEcccHHHHHHHhcCCCeECCcEEEEEEeCCC
Confidence            578999999999997655 57999999999998644   46999999999999999999999999974 67988753

>d1weya_ d.58.7.1 (A:) Calcipressin-1 {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: Calcipressin-1
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.39  E-value=4.2e-13  Score=101.80  Aligned_cols=77  Identities=12%  Similarity=0.120  Sum_probs=66.8

Q ss_pred             CCCCcEEEEeCCCCCC-CH----HHHHHHhccCCCceEEEEeecCCcCceEEEEecCHHHHHHH-HhcCCCeecCeeEEE
Q 026156            2 YAGGYVAEVVGLSPNA-TE----KDIHEFFSHCGDPVHVEIIRSGECGGTAYVTFSNAYALETA-VLLSGATIVDQPVCI   75 (242)
Q Consensus         2 ~~~~~tV~VsNLs~~~-TE----~dLrefFs~~G~I~~V~l~~~~~~~~~AfV~F~~~~aA~tA-l~Lng~~l~g~~I~V   75 (242)
                      +++.++|||+||++.+ ++    ++|+++|+.||+|.++.+++.   .++|||+|.++++|..| ..|||..|+|+.|+|
T Consensus         2 ~~~~~~L~v~nl~~~v~~~d~~k~~l~~lF~~~G~i~~~~~~k~---~~~afV~f~~~~~A~~Ai~~lng~~~~g~~l~v   78 (104)
T d1weya_           2 SSGSSGLIACVANDDVFSESETRAKFESLFRTYDKDTTFQYFKS---FKRVRINFSNPLSAADARLRLHKTEFLGKEMKL   78 (104)
T ss_dssp             CSCCCEEEEECCCGGGGSTTTHHHHHHHHHHTTCSSCEEEEETT---TTEEEEECSSTTHHHHHHHTSTTSEETTEECEE
T ss_pred             CCCCceEEEEeCCchhcCcHHHHHHHHHHhcccccceEEEEecC---CCEEEEEECCHHHHHHHHHHhcccccCCCEeEE
Confidence            3566899999999986 43    569999999999999999854   46999999999999999 699999999999999


Q ss_pred             EecCCC
Q 026156           76 IRWGEY   81 (242)
Q Consensus        76 ~~a~~~   81 (242)
                      ..+...
T Consensus        79 ~~a~~~   84 (104)
T d1weya_          79 YFAQTL   84 (104)
T ss_dssp             ECCCCS
T ss_pred             eecccC
Confidence            876443

>d1u1qa_ d.58.7.1 (A:) Nuclear ribonucleoprotein A1 (RNP A1, UP1) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: Nuclear ribonucleoprotein A1 (RNP A1, UP1)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.37  E-value=1.3e-12  Score=105.56  Aligned_cols=76  Identities=17%  Similarity=0.203  Sum_probs=68.6

Q ss_pred             cEEEEeCCCCCCCHHHHHHHhccCCCceEEEEeecCC---cCceEEEEecCHHHHHHHHhcCCCeecCeeEEEEecCCC
Q 026156            6 YVAEVVGLSPNATEKDIHEFFSHCGDPVHVEIIRSGE---CGGTAYVTFSNAYALETAVLLSGATIVDQPVCIIRWGEY   81 (242)
Q Consensus         6 ~tV~VsNLs~~~TE~dLrefFs~~G~I~~V~l~~~~~---~~~~AfV~F~~~~aA~tAl~Lng~~l~g~~I~V~~a~~~   81 (242)
                      ++|||+|||+.+|+++|+++|+.||.|.++.++++..   ..++|||+|.+++.+..|+.+++..+.++.+.+.+....
T Consensus         7 r~lfV~nLp~~~te~~L~~~F~~~G~v~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~~~~~~~~~~~~~~~~~~~   85 (183)
T d1u1qa_           7 RKLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTYATVEEVDAAMNARPHKVDGRVVEPKRAVSR   85 (183)
T ss_dssp             HEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHTCSCEETTEECEEEECCCT
T ss_pred             CEEEEECCCCCCCHHHHHHHHHHcCCEEEEEeeecccCCCccCceecccCCHHHHHHHHHhcCCcccccchhhhhhhhc
Confidence            7999999999999999999999999999999998743   236999999999999999999999999999999876443

>d1owxa_ d.58.7.1 (A:) Lupus LA protein {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: Lupus LA protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.33  E-value=1e-12  Score=100.68  Aligned_cols=69  Identities=12%  Similarity=0.152  Sum_probs=59.6

Q ss_pred             cEEEEeCCCCCCCHHHHHHHhccCCCceEEEEeecCCcCceEEEEecCH-HHHHHH-HhcCCCeecCeeEEEEe
Q 026156            6 YVAEVVGLSPNATEKDIHEFFSHCGDPVHVEIIRSGECGGTAYVTFSNA-YALETA-VLLSGATIVDQPVCIIR   77 (242)
Q Consensus         6 ~tV~VsNLs~~~TE~dLrefFs~~G~I~~V~l~~~~~~~~~AfV~F~~~-~aA~tA-l~Lng~~l~g~~I~V~~   77 (242)
                      ..+||+|||+.+|+++|+++|+.||+|.+|.|+++   .++|||.|.++ ++|..| ..|||..|.++.+.|..
T Consensus        12 ~~~fvgnL~~~~tee~Lk~~F~~fG~V~~v~i~~~---kg~gfV~F~~~~~~A~~a~~~~~~~~l~~~~~~v~~   82 (113)
T d1owxa_          12 LLKFSGDLDDQTCREDLHILFSNHGEIKWIDFVRG---AKEGIILFKEKAKEALGKAKDANNGNLQLRNKEVTW   82 (113)
T ss_dssp             EEEEEESCCSSCCHHHHHHHTCSSCCEEEEECCTT---CSEEEEEESSCHHHHHHHHHHTTTSCBCTTSSSEEE
T ss_pred             eEEEECCCCCCCCHHHHHHHHHhcCChheEEEecC---CceEEEEecCcHHHHHHHHHHhcCCceecCceEEEE
Confidence            46799999999999999999999999999999864   46999999996 677767 78999988877766653

>d2cq2a1 d.58.7.1 (A:25-125) Alkylation repair AlkB homolog 8, ALKBH8 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: Alkylation repair AlkB homolog 8, ALKBH8
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.26  E-value=2.4e-12  Score=96.94  Aligned_cols=70  Identities=14%  Similarity=0.160  Sum_probs=59.1

Q ss_pred             CcEEEEeC--CCCCCCHHHHHHHhccCCCceEEEEeecCCcCceEEEEecCHHHHHHH-HhcCCCee-cCeeEEEEe
Q 026156            5 GYVAEVVG--LSPNATEKDIHEFFSHCGDPVHVEIIRSGECGGTAYVTFSNAYALETA-VLLSGATI-VDQPVCIIR   77 (242)
Q Consensus         5 ~~tV~VsN--Ls~~~TE~dLrefFs~~G~I~~V~l~~~~~~~~~AfV~F~~~~aA~tA-l~Lng~~l-~g~~I~V~~   77 (242)
                      .++++|.|  ||+.+||++|+++|+.||.|++|.+..+   .++|||+|.+.++|..| ..|||..| +++.+.|..
T Consensus        18 t~~l~V~ng~L~~~vte~~L~~~F~~~G~i~~i~~~~~---k~~aFV~f~~~e~A~~A~~~lng~~i~~~~~~~i~~   91 (101)
T d2cq2a1          18 TQSLVVANGGLGNGVSRNQLLPVLEKCGLVDALLMPPN---KPYSFARYRTTEESKRAYVTLNGKEVVDDLGQKITL   91 (101)
T ss_dssp             CSEEEEETCTGGGTCCHHHHHHHHHHHSCEEEEECCTT---CSCEEEEESSHHHHHHHHHHTTTCEEECTTSCEEEC
T ss_pred             CceEEEECCCCCCCCCHHHHHHHHHhhCcccEEeeccC---ccEEEEEECCHHHHHHHHHHhCCCCCCCCCCcEEEE
Confidence            36788855  9999999999999999999999998865   35999999999999999 59999987 344444443

>d1jmta_ d.58.7.3 (A:) U2AF35 (35 KDa subunit) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Splicing factor U2AF subunits
domain: U2AF35 (35 KDa subunit)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.16  E-value=1.8e-12  Score=98.30  Aligned_cols=72  Identities=18%  Similarity=0.128  Sum_probs=62.5

Q ss_pred             EEEEeCCCCCCCHHHHHHHhccCCCceEEEEeecCC--cCceEEEEecCHHHHHHH-HhcCCCeecCeeEEEEec
Q 026156            7 VAEVVGLSPNATEKDIHEFFSHCGDPVHVEIIRSGE--CGGTAYVTFSNAYALETA-VLLSGATIVDQPVCIIRW   78 (242)
Q Consensus         7 tV~VsNLs~~~TE~dLrefFs~~G~I~~V~l~~~~~--~~~~AfV~F~~~~aA~tA-l~Lng~~l~g~~I~V~~a   78 (242)
                      .++|.++...++|++|+++|+.||+|.+|.|.++..  ..++|||+|.++++|..| ..|||..++|++|.|..+
T Consensus        29 ~~~v~~~~~~~~ed~l~e~f~k~G~I~~v~I~~~~~~~~~G~~fV~f~~~~~A~~Ai~~lng~~~~gr~i~v~~s  103 (104)
T d1jmta_          29 DVEMQEHYDEFFEEVFTEMEEKYGEVEEMNVCDNLGDHLVGNVYVKFRREEDAEKAVIDLNNRWFNGQPIHAELS  103 (104)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHTCCEEEEEECCSSSSSSEEEEEEEESCHHHHHHHHHHHTTCEETTEECCEEEC
T ss_pred             hHHhhhhhhhhhHHHHHHHhccCCCEEEEEeecCCCCCEeeEEEEEEechhHHHHHHHHHCCCEECCEEEEEEEC
Confidence            356777778889999999999999999999986532  347999999999999999 589999999999999753

>d2dita1 d.58.7.1 (A:8-106) HIV Tat-specific factor 1 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: HIV Tat-specific factor 1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.13  E-value=7.9e-11  Score=88.07  Aligned_cols=75  Identities=15%  Similarity=0.186  Sum_probs=63.5

Q ss_pred             CcEEEEeCC--CCCC---------CHHHHHHHhccCCCceEEEEeecCCcCceEEEEecCHHHHHHH-HhcCCCeecCee
Q 026156            5 GYVAEVVGL--SPNA---------TEKDIHEFFSHCGDPVHVEIIRSGECGGTAYVTFSNAYALETA-VLLSGATIVDQP   72 (242)
Q Consensus         5 ~~tV~VsNL--s~~~---------TE~dLrefFs~~G~I~~V~l~~~~~~~~~AfV~F~~~~aA~tA-l~Lng~~l~g~~   72 (242)
                      .++|+|.||  |..+         -++||++.|+.||+|..|.+..+. ..+++||+|.++++|..| ..|||..++|++
T Consensus         8 ~r~v~l~nmf~~~~~~~~~~~~~~i~edv~~~~~~~G~V~~v~~~~~~-~~G~~fV~f~~~e~A~~A~~~lng~~~~gr~   86 (99)
T d2dita1           8 ERVVIIKNMFHPMDFEDDPLVLNEIREDLRVECSKFGQIRKLLLFDRH-PDGVASVSFRDPEEADYCIQTLDGRWFGGRQ   86 (99)
T ss_dssp             CCEEEEESSCCTTHHHHCSHHHHHHHHHHHHHGGGTSCCSEEEEETTC-TTCEEEEECSCHHHHHHHHHHSTTCEETTEE
T ss_pred             ccEEEEccCCCHHHhhcchHHHHHHHHHHHHHhcCcccEEEEeccCCC-CccEEEEEECCHHHHHHHHHHhCCcEECCEE
Confidence            479999999  4332         236899999999999999987653 357999999999999999 599999999999


Q ss_pred             EEEEecCC
Q 026156           73 VCIIRWGE   80 (242)
Q Consensus        73 I~V~~a~~   80 (242)
                      |.|..+.+
T Consensus        87 i~v~~~~g   94 (99)
T d2dita1          87 ITAQAWDG   94 (99)
T ss_dssp             CEEEECCS
T ss_pred             EEEEEeCC
Confidence            99998753

>d1o0pa_ d.58.7.1 (A:) Splicing factor U2AF 65 KDa subunit {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: Splicing factor U2AF 65 KDa subunit
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.90  E-value=6.1e-10  Score=83.63  Aligned_cols=74  Identities=19%  Similarity=0.252  Sum_probs=62.0

Q ss_pred             cEEEEeCC--CCCC--------CHHHHHHHhccCCCceEEEEeecCC-----cCceEEEEecCHHHHHHH-HhcCCCeec
Q 026156            6 YVAEVVGL--SPNA--------TEKDIHEFFSHCGDPVHVEIIRSGE-----CGGTAYVTFSNAYALETA-VLLSGATIV   69 (242)
Q Consensus         6 ~tV~VsNL--s~~~--------TE~dLrefFs~~G~I~~V~l~~~~~-----~~~~AfV~F~~~~aA~tA-l~Lng~~l~   69 (242)
                      ++|.+.||  +...        ..+||++.|+.||.|++|.|.++..     ..+++||.|.++++|..| ..|||..++
T Consensus         5 ~vl~l~N~~~~~~l~~~~~~~~i~edi~~e~~k~G~v~~v~I~~~~~~~~~~~~g~vfV~f~~~e~A~~A~~~l~Gr~f~   84 (104)
T d1o0pa_           5 EVLCLMNMVLPEELLDDEEYEEIVEDVRDECSKYGLVKSIEIPRPVDGVEVPGCGKIFVEFTSVFDCQKAMQGLTGRKFA   84 (104)
T ss_dssp             SEEEEESSCCTTTTTSHHHHHHHHHHHHHHHTTTSCEEEEECCCCTTSSSCTTCCEEEEEESCHHHHHHHHHHHSSCCSS
T ss_pred             cEEEEeCCCCHHHcCCchhHHHHHHHHHHHhcccCceEEEEEeecCCCCccCCceEEEEEECCHHHHHHHHHHHCCCEEC
Confidence            68999999  3332        3467999999999999999986432     236999999999999999 689999999


Q ss_pred             CeeEEEEecC
Q 026156           70 DQPVCIIRWG   79 (242)
Q Consensus        70 g~~I~V~~a~   79 (242)
                      |+.|.|..+.
T Consensus        85 gR~v~v~f~~   94 (104)
T d1o0pa_          85 NRVVVTKYCD   94 (104)
T ss_dssp             SSCCEEEEEC
T ss_pred             CeEEEEEEcC
Confidence            9999999763

>d1ufwa_ d.58.7.1 (A:) Synaptojanin 2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: Synaptojanin 2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.43  E-value=0.00015  Score=53.05  Aligned_cols=68  Identities=21%  Similarity=0.228  Sum_probs=57.5

Q ss_pred             CcEEEEeCCCCCCCH---------HHHHHHhccCCCceEEEEeecCCcCceEEEEecCHHHHHHHHhcCCCeecCeeEEE
Q 026156            5 GYVAEVVGLSPNATE---------KDIHEFFSHCGDPVHVEIIRSGECGGTAYVTFSNAYALETAVLLSGATIVDQPVCI   75 (242)
Q Consensus         5 ~~tV~VsNLs~~~TE---------~dLrefFs~~G~I~~V~l~~~~~~~~~AfV~F~~~~aA~tAl~Lng~~l~g~~I~V   75 (242)
                      +.||.|.=.++...+         .+|.+-|+.||+|.-|++..+     ...|||.+-+.|-+|+.++|.++.|+.|+|
T Consensus        15 DgTIvV~i~~~s~e~~~~FDe~l~~~Llq~l~~~GeViLvRFv~d-----~mwVTF~dG~SAL~al~l~g~~v~G~~l~I   89 (95)
T d1ufwa_          15 DATVVVNLQSPTLEEKNEFPEDLRTELMQTLGSYGTIVLVRINQG-----QMLVTFADSHSALSVLDVDGMKVKGRAVKI   89 (95)
T ss_dssp             TCEEEEEESSCCHHHHHSCCHHHHHHHHHHHHHHSCCSEEEEETT-----EEEEECSCSHHHHHHHHGGGSEETTEEEEE
T ss_pred             CcEEEEEeccCCccccccCCHHHHHHHHHHHhhCCeEEEEEEeCC-----eEEEEECCcHHHHHHhccCCeEEcceEEEE
Confidence            467888766655544         367788999999999999854     689999999999999999999999999999


Q ss_pred             Ee
Q 026156           76 IR   77 (242)
Q Consensus        76 ~~   77 (242)
                      +.
T Consensus        90 t~   91 (95)
T d1ufwa_          90 SG   91 (95)
T ss_dssp             EC
T ss_pred             ec
Confidence            84

>d1uw4a_ d.58.7.4 (A:) RNA processing protein UPF3x, RRM domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Smg-4/UPF3
domain: RNA processing protein UPF3x, RRM domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.02  E-value=0.0015  Score=47.37  Aligned_cols=65  Identities=17%  Similarity=0.230  Sum_probs=55.1

Q ss_pred             cEEEEeCCCCCCCHHHHHHHhccCCCceEEEEeecCCc-----CceEEEEecCHHHHHHH-HhcCCCeecC
Q 026156            6 YVAEVVGLSPNATEKDIHEFFSHCGDPVHVEIIRSGEC-----GGTAYVTFSNAYALETA-VLLSGATIVD   70 (242)
Q Consensus         6 ~tV~VsNLs~~~TE~dLrefFs~~G~I~~V~l~~~~~~-----~~~AfV~F~~~~aA~tA-l~Lng~~l~g   70 (242)
                      +.|-|.+|||..||+++.+-++..|++........+-+     ...|||.|.+++.+..- ..++|+.+.+
T Consensus         2 tKvVvRrLPP~Lte~~F~~~l~~~~~~d~~~f~~Gk~s~~~~~~SRAYi~F~~~~~v~~F~~~f~g~~F~D   72 (91)
T d1uw4a_           2 SKVVIRRLPPTLTKEQLQEHLQPMPEHDYFEFFSNDTSLYPHMYARAYINFKNQEDIILFRDRFDGYVFLD   72 (91)
T ss_dssp             CEEEEEEECTTCCHHHHHHHHCSCCCEEEEEEEESCCSSTTCCCEEEEEEESSSHHHHHHHHHHTTCEEEC
T ss_pred             ceEEEecCCCCCCHHHHHHHhCCcCceEEEEEeCCCcCCCCCcceEEEEEeCCHHHHHHHHHHcCCcEEEc
Confidence            47999999999999999999999999988877754321     24899999999998887 7899998865

>d2dgxa1 d.58.7.1 (A:563-635) Limkain-b1, LKAP {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: Limkain-b1, LKAP
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.83  E-value=0.0025  Score=44.24  Aligned_cols=65  Identities=17%  Similarity=0.103  Sum_probs=55.1

Q ss_pred             CCCCHHHHHH----HhccCCCceEEEEeecCCcCceEEEEecCHHHHHHH-HhcCCCeecCeeEEEEecC
Q 026156           15 PNATEKDIHE----FFSHCGDPVHVEIIRSGECGGTAYVTFSNAYALETA-VLLSGATIVDQPVCIIRWG   79 (242)
Q Consensus        15 ~~~TE~dLre----fFs~~G~I~~V~l~~~~~~~~~AfV~F~~~~aA~tA-l~Lng~~l~g~~I~V~~a~   79 (242)
                      +..++++|++    .|+.||+|.++.+..-.+..-.|-|...+.++|..| -.|....|++++|.|+...
T Consensus         2 ~~L~~kelqq~L~~~f~~h~~V~sv~l~~~~dg~~~A~V~v~~~q~A~~~v~~LhR~KiG~KRI~Vs~~~   71 (73)
T d2dgxa1           2 YRLSRKELQQLLQEAFARHGKVKSVELSPHTDYQLKAVVQMENLQDAIGAVNSLHRYKIGSKKILVSLAT   71 (73)
T ss_dssp             TTSCHHHHHHHHHHHHHHHSCEEEEEECSCCSTTCCEEEEESSHHHHHHHHHHHTTEEETTEEEEEEECC
T ss_pred             CcCCHHHHHHHHHHHHHhheeEEEEEEEeccCCcEEEEEEcCCHHHHHHHHHHHHHHhcCCeEEEEEEec
Confidence            4566777765    589999999999986555456899999999999999 6999999999999998654

>d1whva_ d.58.7.1 (A:) Poly(A)-specific ribonuclease PARN {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: Poly(A)-specific ribonuclease PARN
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=87.21  E-value=0.66  Score=33.47  Aligned_cols=68  Identities=22%  Similarity=0.284  Sum_probs=50.6

Q ss_pred             cEEEEeCCCCCCCHHHHHHHhccCCCceEEEEeecCCcCceEEEEecCHHHHHHHHhcCCCeecCeeEEEEecCCC
Q 026156            6 YVAEVVGLSPNATEKDIHEFFSHCGDPVHVEIIRSGECGGTAYVTFSNAYALETAVLLSGATIVDQPVCIIRWGEY   81 (242)
Q Consensus         6 ~tV~VsNLs~~~TE~dLrefFs~~G~I~~V~l~~~~~~~~~AfV~F~~~~aA~tAl~Lng~~l~g~~I~V~~a~~~   81 (242)
                      .-||.-..|..+...||.++||.||.| +|..+.+    ..|||...+++.++.++.+-+   .....++..+.+|
T Consensus        16 dHVf~~tFP~~Wk~~dI~~lFSpfG~V-~VswIdd----TSa~V~L~~~e~~~~v~~~~~---~~~~f~L~tY~ey   83 (100)
T d1whva_          16 DHVLHVTFPKEWKTSDLYQLFSAFGNI-QISWIDD----TSAFVSLSQPEQVQIAVNTSK---YAESYRIQTYAEY   83 (100)
T ss_dssp             CSEEEEECCTTCCHHHHHHHHTTTCSC-CCEEEET----TEEEEECSCHHHHHHHHHHHH---HCCSSEEEEHHHH
T ss_pred             ceeEEEeCCcccchhHHHHHhcCCCce-EEEEecC----ceEEEEecCHHHHHHHHHHhc---cCCceEEEEHHHH
Confidence            358899999999999999999999986 4555543    389999999999999853322   3344555555444