Citrus Sinensis ID: 026172

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240--
Protein Sequence
MRKSFKDSLKALEADIQLANTLASEYPREYDGACLQMRLSYSQAAHTFLFLVQWIDCRLAGALGLLRILIYKAYADGKTTMCTRERKASIKEFYGVIFPSLLQLQRGITDVEDKKQKEICDAKYKKKGRMDKGKLSEIDIEREEECGICLEICCKIVLPDCNHSMCMRCYRNWRARSQSCPFCRDSLRRVNSGDLWIYTSEDDIVDLASISRENLKRLFMYIDKLPFITPNPTLVSYDPRYR
Secondary Structure (PSIPRED)
ccccHHHHHHHHHHHHHHHHHHHHHccccccccEEEEEcccccHHHHHHHHHHHHHHccccccccHHHHHHccccccccccccHHHHHHHHHHHcccHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHHcccccHHcccccccccccccccccccccccccHHHHHHHHHHHcccccccccccccccccccccEEEcccHHHHHHHHccHHHHHHHHHHccccccccccccEEccccccc
Secondary Structure Prediction (SSPRO)
ccccHHHHHHHHHHHHHHHHHHHHHccccccccEEEEEEEcccHHHHHHHHHHHHHcHHHHHHccEEEEEEEEEcccccccccHcHcccHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHccccHHHccccccccHHHHHHccEEccccccEEccccccHHHHHHHHHHHHccccccHHHHHHcccccccEEEEEcccccccHHHHHHHHHHHHHHHHHHccccccccEEEEEccccc
Coil and Loop (DISEMBL)
MRKSFKDSLKALEADIQLANTLAseypreydGACLQMRLSYSQAAHTFLFLVQWIDCRLAGALGLLRILIYKAYADGKTTMCTRERKASIKEFYGVIFPSLLQLQRGITDVEDKKQKEICDAkykkkgrmdkgklseidiEREEECGICLEIcckivlpdcnhsmcmrcyrnwrarsqscpfcrdslrrvnsgdlwiytseddiVDLASISRENLKRLFMYIdklpfitpnptlvsydpryr
Flexible Loop (DISEMBL)
MRKSFKDSLKALEADIQLANTLASEYPREYDGACLQMRLSYSQAAHTFLFLVQWIDCRLAGALGLLRILIYKAYADGKTTMCTRERKASIKEFYGVIFPSLLQLQRgitdvedkkqkeicdakykkkgrmdkgklseidiereeECGICLEICCKIVLPDCNHSMCMRCYRNWRARSQSCPFCRDSLrrvnsgdlwiytseddivdLASISRENLKRLFmyidklpfitpnptlvsydpryr
Low Complexity Region (SEG)
MRKSFKDSLKALEADIQLANTLASEYPREYDGACLQMRLSYSQAAHTFLFLVQWIDCrlagalgllriliYKAYADGKTTMCTRERKASIKEFYGVIFPSLLQLQRGITDVEDKKQKEICDAkykkkgrmdkgkLSEIDiereeecgicleicckiVLPDCNHSMCMRCYRNWRARSQSCPFCRDSLRRVNSGDLWIYTSEDDIVDLASISRENLKRLFMYIDKLPFITPNPTLVSYDPRYR
Disordered region (IsUnstruct)
**************DIQLANTLASEYPREYDGACLQMRLSYSQAAHTFLFLVQWIDCRLAGALGLLRILIYKAYADGKTTMCTRERKASIKEFYGVIFPSLLQLQRGITDVE******IC*****************IDIEREEECGICLEICCKIVLPDCNHSMCMRCYRNWRARSQSCPFCRDSLRRVNSGDLWIYTSEDDIVDLASISRENLKRLFMYIDKLPFITPNPTLV*******
Disordered Region (DISOPRED)
*********KALEADIQLANTLASEYPREYDGACLQMRLSYSQAAHTFLFLVQWIDCRLAGALGLLRILIYKAYADGKTTMCTRERKASIKEFYGVIFPSLLQLQR**********************************EREEECGICLEICCKIVLPDCNHSMCMRCYRNWRARSQSCPFCRDSLRRVNSGDLWIYTSEDDIVDLASISRENLKRLFMYIDKLPFITPNPTLVSYDPRY*
Disordered Region (DISEMBL)
********LKALEADIQLANTLASEYPREYDGACLQMRLSYSQAAHTFLFLVQWIDCRLAGALGLLRILIYKAYADGKTTMCTRERKASIKEFYGVIFPSLLQLQRGITDVEDKKQKEICDAKY**********LSEIDIEREEECGICLEICCKIVLPDCNHSMCMRCYRNWRARSQSCPFCRDSLRRVNSGDLWIYTSEDDIVDLASISRENLKRLFMYIDKLPFITPNPTLVSYDPRYR
Disordered Region (DISPRO)
***SFKDSLKALEADIQLANTLASEYPREYDGACLQMRLSYSQAAHTFLFLVQWIDCRLAGALGLLRILIYKAYADGKTTMCTRERKASIKEFYGVIFPSLLQLQRGITDVEDKKQKEICDAKYKKKG*****KLSEIDIEREEECGICLEICCKIVLPDCNHSMCMRCYRNWRARSQSCPFCRDSLRRVNSGDLWIYTSEDDIVDLASISRENLKRLFMYIDKLPFITPNPTLVSYDP***
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MRKSFKDSLKALEADIQLANTLASEYPREYDGACLQMRLSYSQAAHTFLFLVQWIDCRLAGALGLLRILIYKAYADGKTTMCTRERKASIKEFYGVIFPSLLQLQRGITDVEDKKQKEICDAKYKKKGRMDKGKLSEIDIEREEECGICLEICCKIVLPDCNHSMCMRCYRNWRARSQSCPFCRDSLRRVNSGDLWIYTSEDDIVDLASISRENLKRLFMYIDKLPFITPNPTLVSYDPRYR
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	242	2.2.26 [Sep-21-2011]
Q5ZM74	230	RING finger protein 141 O	yes	no	0.243	0.256	0.4	1e-06
Q2XNS1	231	RING finger protein 141 O	yes	no	0.252	0.264	0.358	6e-06
Q32L15	230	RING finger protein 141 O	yes	no	0.252	0.265	0.358	6e-06
Q6IV57	230	RING finger protein 141 O	yes	no	0.252	0.265	0.358	7e-06
Q99MB7	230	RING finger protein 141 O	yes	no	0.252	0.265	0.358	7e-06
Q5R7K8	230	RING finger protein 141 O	yes	no	0.252	0.265	0.358	7e-06
Q8WVD5	230	RING finger protein 141 O	yes	no	0.252	0.265	0.358	7e-06
Q6IV56	222	RING finger protein 141 O	yes	no	0.264	0.288	0.343	2e-05
Q803C1	485	E3 ubiquitin-protein liga	no	no	0.384	0.191	0.32	6e-05
Q13064	507	Probable E3 ubiquitin-pro	no	no	0.214	0.102	0.352	9e-05

>sp|Q5ZM74|RN141_CHICK RING finger protein 141 OS=Gallus gallus GN=RNF141 PE=2 SV=1

 Score = 53.9 bits (128), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 26/65 (40%), Positives = 38/65 (58%), Gaps = 6/65 (9%)

Query: 143 EEECGICLEICCKIVLPDCNHSMCMRCYRNWRARSQSCPFCRDSLRRVNSGDLWIYT--- 199
           E+EC IC++    ++LP C HS C +C   W  R +SCP CR  +    +GD W+ +   
Sbjct: 152 EDECCICMDGRVDLILP-CAHSFCQKCIDKWSDRHRSCPVCRRQV--TGAGDSWVVSDAP 208

Query: 200 SEDDI 204
           +EDDI
Sbjct: 209 TEDDI 213

Gallus gallus (taxid: 9031)

>sp|Q2XNS1|RN141_CANFA RING finger protein 141 OS=Canis familiaris GN=RNF141 PE=2 SV=1

 Score = 51.2 bits (121), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 24/67 (35%), Positives = 39/67 (58%), Gaps = 6/67 (8%)

Query: 143 EEECGICLEICCKIVLPDCNHSMCMRCYRNWRARSQSCPFCRDSLRRVNSGDLWIYT--- 199
           EEEC IC++    ++LP C HS C +C   W  R ++CP CR  L+   + + W+ +   
Sbjct: 153 EEECCICMDGRADLILP-CAHSFCQKCIDKWSDRHRNCPICR--LQMTGANESWVVSDAP 209

Query: 200 SEDDIVD 206
           +EDD+ +
Sbjct: 210 TEDDMAN 216

May be involved in spermatogenesis.

Canis familiaris (taxid: 9615)

>sp|Q32L15|RN141_BOVIN RING finger protein 141 OS=Bos taurus GN=RNF141 PE=2 SV=1

 Score = 51.2 bits (121), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 24/67 (35%), Positives = 39/67 (58%), Gaps = 6/67 (8%)

Query: 143 EEECGICLEICCKIVLPDCNHSMCMRCYRNWRARSQSCPFCRDSLRRVNSGDLWIYT--- 199
           EEEC IC++    ++LP C HS C +C   W  R ++CP CR  L+   + + W+ +   
Sbjct: 152 EEECCICMDGRADLILP-CAHSFCQKCIDKWSDRHRNCPICR--LQMTGANESWVVSDAP 208

Query: 200 SEDDIVD 206
           +EDD+ +
Sbjct: 209 TEDDMAN 215

May be involved in spermatogenesis.

Bos taurus (taxid: 9913)

>sp|Q6IV57|RN141_RAT RING finger protein 141 OS=Rattus norvegicus GN=Rnf141 PE=2 SV=1

 Score = 51.2 bits (121), Expect = 7e-06,   Method: Compositional matrix adjust.
 Identities = 24/67 (35%), Positives = 39/67 (58%), Gaps = 6/67 (8%)

Query: 143 EEECGICLEICCKIVLPDCNHSMCMRCYRNWRARSQSCPFCRDSLRRVNSGDLWIYT--- 199
           EEEC IC++    ++LP C HS C +C   W  R ++CP CR  L+   + + W+ +   
Sbjct: 152 EEECCICMDGRADLILP-CAHSFCQKCIDKWSDRHRNCPICR--LQMTGANESWVVSDAP 208

Query: 200 SEDDIVD 206
           +EDD+ +
Sbjct: 209 TEDDMAN 215

May be involved in spermatogenesis.

Rattus norvegicus (taxid: 10116)

>sp|Q99MB7|RN141_MOUSE RING finger protein 141 OS=Mus musculus GN=Rnf141 PE=2 SV=2

 Score = 51.2 bits (121), Expect = 7e-06,   Method: Compositional matrix adjust.
 Identities = 24/67 (35%), Positives = 39/67 (58%), Gaps = 6/67 (8%)

Query: 143 EEECGICLEICCKIVLPDCNHSMCMRCYRNWRARSQSCPFCRDSLRRVNSGDLWIYT--- 199
           EEEC IC++    ++LP C HS C +C   W  R ++CP CR  L+   + + W+ +   
Sbjct: 152 EEECCICMDGRADLILP-CAHSFCQKCIDKWSDRHRNCPICR--LQMTGANESWVVSDAP 208

Query: 200 SEDDIVD 206
           +EDD+ +
Sbjct: 209 TEDDMAN 215

May be involved in spermatogenesis.

Mus musculus (taxid: 10090)

>sp|Q5R7K8|RN141_PONAB RING finger protein 141 OS=Pongo abelii GN=RNF141 PE=2 SV=1

 Score = 51.2 bits (121), Expect = 7e-06,   Method: Compositional matrix adjust.
 Identities = 24/67 (35%), Positives = 39/67 (58%), Gaps = 6/67 (8%)

Query: 143 EEECGICLEICCKIVLPDCNHSMCMRCYRNWRARSQSCPFCRDSLRRVNSGDLWIYT--- 199
           EEEC IC++    ++LP C HS C +C   W  R ++CP CR  L+   + + W+ +   
Sbjct: 152 EEECCICMDGRADLILP-CAHSFCQKCIDKWSDRHRNCPICR--LQMTGANESWVVSDAP 208

Query: 200 SEDDIVD 206
           +EDD+ +
Sbjct: 209 TEDDMAN 215

May be involved in spermatogenesis.

Pongo abelii (taxid: 9601)

>sp|Q8WVD5|RN141_HUMAN RING finger protein 141 OS=Homo sapiens GN=RNF141 PE=1 SV=1

 Score = 51.2 bits (121), Expect = 7e-06,   Method: Compositional matrix adjust.
 Identities = 24/67 (35%), Positives = 39/67 (58%), Gaps = 6/67 (8%)

Query: 143 EEECGICLEICCKIVLPDCNHSMCMRCYRNWRARSQSCPFCRDSLRRVNSGDLWIYT--- 199
           EEEC IC++    ++LP C HS C +C   W  R ++CP CR  L+   + + W+ +   
Sbjct: 152 EEECCICMDGRADLILP-CAHSFCQKCIDKWSDRHRNCPICR--LQMTGANESWVVSDAP 208

Query: 200 SEDDIVD 206
           +EDD+ +
Sbjct: 209 TEDDMAN 215

May be involved in spermatogenesis.

Homo sapiens (taxid: 9606)

>sp|Q6IV56|RN141_DANRE RING finger protein 141 OS=Danio rerio GN=rnf141 PE=2 SV=2

 Score = 49.7 bits (117), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 23/67 (34%), Positives = 36/67 (53%), Gaps = 3/67 (4%)

Query: 143 EEECGICLEICCKIVLPDCNHSMCMRCYRNWRARSQSCPFCRDSLRRVNSGDLWIYTSED 202
           EEEC IC++    ++LP C HS C +C   W  +S++CP CR  +   N  + W+ +   
Sbjct: 144 EEECCICMDGKADLILP-CAHSFCQKCIDKWSGQSRNCPVCRIQVTAAN--ESWVMSDAP 200

Query: 203 DIVDLAS 209
              D+A 
Sbjct: 201 TGEDVAG 207

Danio rerio (taxid: 7955)

>sp|Q803C1|RNF8_DANRE E3 ubiquitin-protein ligase RNF8 OS=Danio rerio GN=rnf8 PE=2 SV=1

 Score = 48.1 bits (113), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 32/100 (32%), Positives = 49/100 (49%), Gaps = 7/100 (7%)

Query: 89  SIKEFYGVIFPSLLQLQRGITDVEDKKQKEI-CDAKYKKKGRMDK----GKLSEIDIERE 143
           ++KE   VI   L    +G  +V   K KE+    + K+K +  K     +++E+ +E E
Sbjct: 332 ALKEHRKVI-EELKHAWQGFKEVLQAKDKELEVTKEEKEKAKAQKEEVVTQMTEV-LESE 389

Query: 144 EECGICLEICCKIVLPDCNHSMCMRCYRNWRARSQSCPFC 183
            +C IC E+  + V  +C HS C  C   WR R   CP C
Sbjct: 390 LQCSICSELFIEAVTLNCAHSFCQHCISEWRNRKDKCPMC 429

E3 ubiquitin-protein ligase required for assembly of repair proteins to sites of DNA damage. Catalyzes the 'Lys-63'-linked ubiquitination of histone H2A and H2AX. Following DNA double-strand breaks (DSBs), it is recruited to the sites of damage by ATM-phosphorylated mdc1, mediates the ubiquitination of histones H2A and H2AX, thereby promoting the formation of tp53bp1 and brca1 ionizing radiation-induced foci (IRIF). Promotes the formation of 'Lys-63'-linked polyubiquitin chains and functions with the specific ubiquitin-conjugating ube2n/ubc13. Substrates that are polyubiquitinated at 'Lys-63' are usually not targeted for degradation. Ubiquitination of histone H2A requires ube2n but not mms2 (ube2v2). May also ubiquitinate histone H2B.

Danio rerio (taxid: 7955)

EC: 6

EC: .

EC: 3

EC: .

EC: 2

EC: .

EC: -

>sp|Q13064|MKRN3_HUMAN Probable E3 ubiquitin-protein ligase makorin-3 OS=Homo sapiens GN=MKRN3 PE=1 SV=1

 Score = 47.4 bits (111), Expect = 9e-05,   Method: Compositional matrix adjust.
 Identities = 24/68 (35%), Positives = 34/68 (50%), Gaps = 16/68 (23%)

Query: 146 CGICLEICCK---------IVLPDCNHSMCMRCYRNWRARSQ-------SCPFCRDSLRR 189
           CGIC+E+  +          +L +CNHS C+RC R WR+  Q       SCP CR +   
Sbjct: 311 CGICMEVVYEKANPNDRRFGILSNCNHSFCIRCIRRWRSARQFENRIVKSCPQCRVTSEL 370

Query: 190 VNSGDLWI 197
           V   + W+
Sbjct: 371 VIPSEFWV 378

E3 ubiquitin ligase catalyzing the covalent attachment of ubiquitin moieties onto substrate proteins.

Homo sapiens (taxid: 9606)

EC: 6

EC: .

EC: 3

EC: .

EC: 2

EC: .

EC: -

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	242
224140411	241	predicted protein [Populus trichocarpa]	0.995	1.0	0.822	1e-115
225440680	242	PREDICTED: uncharacterized protein LOC10	1.0	1.0	0.801	1e-113
224090988	242	predicted protein [Populus trichocarpa]	0.995	0.995	0.809	1e-113
255574379	278	protein binding protein, putative [Ricin	0.995	0.866	0.801	1e-112
449483479	242	PREDICTED: uncharacterized LOC101207541	0.979	0.979	0.772	1e-108
449467505	242	PREDICTED: uncharacterized protein LOC10	0.979	0.979	0.767	1e-107
312282839	242	unnamed protein product [Thellungiella h	0.987	0.987	0.769	1e-106
15241003	242	RING/U-box domain-containing protein [Ar	0.987	0.987	0.765	1e-105
297810245	242	zinc finger family protein [Arabidopsis	0.987	0.987	0.748	1e-103
225440678	230	PREDICTED: uncharacterized protein LOC10	0.950	1.0	0.752	1e-103

>gi|224140411|ref|XP_002323576.1| predicted protein [Populus trichocarpa] gi|222868206|gb|EEF05337.1| predicted protein [Populus trichocarpa]

 Score =  419 bits (1076), Expect = e-115,   Method: Compositional matrix adjust.
 Identities = 199/242 (82%), Positives = 219/242 (90%), Gaps = 1/242 (0%)

Query: 1   MRKSFKDSLKALEADIQLANTLASEYPREYDGACLQMRLSYSQAAHTFLFLVQWIDCRLA 60
           MRKSFKDSLKALEADI  ANTLAS+YPREYDGACLQMRLSYS AA+ FLFLVQW DC LA
Sbjct: 1   MRKSFKDSLKALEADIHFANTLASDYPREYDGACLQMRLSYSPAANFFLFLVQWTDCHLA 60

Query: 61  GALGLLRILIYKAYADGKTTMCTRERKASIKEFYGVIFPSLLQLQRGITDVEDKKQKEIC 120
           GALGLLRILIYKAY DGKTTM   ERKASI+EFYGVIFPSLLQL+RGITDVED+KQKEIC
Sbjct: 61  GALGLLRILIYKAYEDGKTTMSIYERKASIREFYGVIFPSLLQLERGITDVEDRKQKEIC 120

Query: 121 DAKYKKKGRMDKGKLSEIDIEREEECGICLEICCKIVLPDCNHSMCMRCYRNWRARSQSC 180
            AKYKKK  MDKGKLSEID+EREEECGIC+EI  ++VLP CNH+MCM+CYR+WR RSQSC
Sbjct: 121 -AKYKKKDEMDKGKLSEIDLEREEECGICMEINSRVVLPKCNHAMCMKCYRDWRTRSQSC 179

Query: 181 PFCRDSLRRVNSGDLWIYTSEDDIVDLASISRENLKRLFMYIDKLPFITPNPTLVSYDPR 240
           PFCRDSL+RVNSGDLWIYT+ ++I+DL+SI+R+NLKRLFMYIDKLP I P P  VSYDPR
Sbjct: 180 PFCRDSLKRVNSGDLWIYTNNNEIIDLSSITRQNLKRLFMYIDKLPLIVPEPIFVSYDPR 239

Query: 241 YR 242
           YR
Sbjct: 240 YR 241

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225440680|ref|XP_002280008.1| PREDICTED: uncharacterized protein LOC100261401 isoform 1 [Vitis vinifera] gi|297740213|emb|CBI30395.3| unnamed protein product [Vitis vinifera]

 Score =  413 bits (1061), Expect = e-113,   Method: Compositional matrix adjust.
 Identities = 194/242 (80%), Positives = 215/242 (88%)

Query: 1   MRKSFKDSLKALEADIQLANTLASEYPREYDGACLQMRLSYSQAAHTFLFLVQWIDCRLA 60
           MRKSFKDSLKALEADIQ ANTLAS Y REYDGAC QMRLSYS AAH FLFLVQW DC LA
Sbjct: 1   MRKSFKDSLKALEADIQYANTLASGYQREYDGACFQMRLSYSPAAHLFLFLVQWTDCHLA 60

Query: 61  GALGLLRILIYKAYADGKTTMCTRERKASIKEFYGVIFPSLLQLQRGITDVEDKKQKEIC 120
           GALGLLRILIYKAY DGKTTM   ERKASI+EFYGVIFPSLLQLQRGITDVE++KQ+EIC
Sbjct: 61  GALGLLRILIYKAYVDGKTTMSVHERKASIREFYGVIFPSLLQLQRGITDVEERKQREIC 120

Query: 121 DAKYKKKGRMDKGKLSEIDIEREEECGICLEICCKIVLPDCNHSMCMRCYRNWRARSQSC 180
            AKYK+K  MDKGKLSE+D+EREEECGIC+EI  K+VLP+CNHS+CM+CYRNWR RSQSC
Sbjct: 121 AAKYKRKDDMDKGKLSEVDVEREEECGICMEISSKVVLPNCNHSLCMKCYRNWRPRSQSC 180

Query: 181 PFCRDSLRRVNSGDLWIYTSEDDIVDLASISRENLKRLFMYIDKLPFITPNPTLVSYDPR 240
           PFCRDSL+RV+SGDLWIY +  +I DL+SISRENLKRLFM+IDKLP I P+P  +SYDP 
Sbjct: 181 PFCRDSLKRVSSGDLWIYMNSHEIDDLSSISRENLKRLFMFIDKLPLIVPDPMFMSYDPP 240

Query: 241 YR 242
           +R
Sbjct: 241 FR 242

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224090988|ref|XP_002309135.1| predicted protein [Populus trichocarpa] gi|222855111|gb|EEE92658.1| predicted protein [Populus trichocarpa]

 Score =  412 bits (1059), Expect = e-113,   Method: Compositional matrix adjust.
 Identities = 196/242 (80%), Positives = 218/242 (90%), Gaps = 1/242 (0%)

Query: 1   MRKSFKDSLKALEADIQLANTLASEYPREYDGACLQMRLSYSQAAHTFLFLVQWIDCRLA 60
           MRKSFKDSLKALEADIQ ANTLAS YPREYDGACLQMRLSYS AAH FLFLVQW    LA
Sbjct: 1   MRKSFKDSLKALEADIQFANTLASVYPREYDGACLQMRLSYSPAAHLFLFLVQWTGFHLA 60

Query: 61  GALGLLRILIYKAYADGKTTMCTRERKASIKEFYGVIFPSLLQLQRGITDVEDKKQKEIC 120
           GALGLLRILIYKAY DGKTTM   ERKAS++EFYGVIFPSLLQLQRGITDVED+KQKEIC
Sbjct: 61  GALGLLRILIYKAYEDGKTTMSIHERKASVREFYGVIFPSLLQLQRGITDVEDRKQKEIC 120

Query: 121 DAKYKKKGRMDKGKLSEIDIEREEECGICLEICCKIVLPDCNHSMCMRCYRNWRARSQSC 180
            AKYKKK  MDKGK+SEID+EREEECGIC+EI  ++VLP CNH+MC++CYR+WRARSQSC
Sbjct: 121 -AKYKKKDEMDKGKISEIDLEREEECGICMEINSRVVLPKCNHAMCLKCYRDWRARSQSC 179

Query: 181 PFCRDSLRRVNSGDLWIYTSEDDIVDLASISRENLKRLFMYIDKLPFITPNPTLVSYDPR 240
           PFCRDSL+RVNSGDLWIYTS ++I+DL+SI+R+NLKRLFMYID+LP I P+P LV Y+P 
Sbjct: 180 PFCRDSLKRVNSGDLWIYTSRNEIIDLSSITRQNLKRLFMYIDRLPLIVPDPVLVPYEPC 239

Query: 241 YR 242
           YR
Sbjct: 240 YR 241

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255574379|ref|XP_002528103.1| protein binding protein, putative [Ricinus communis] gi|223532492|gb|EEF34282.1| protein binding protein, putative [Ricinus communis]

 Score =  409 bits (1051), Expect = e-112,   Method: Compositional matrix adjust.
 Identities = 194/242 (80%), Positives = 215/242 (88%), Gaps = 1/242 (0%)

Query: 1   MRKSFKDSLKALEADIQLANTLASEYPREYDGACLQMRLSYSQAAHTFLFLVQWIDCRLA 60
           MRKSFKDSLKALEADIQ ANTLAS+YPREYDGACLQMRLSYS AA  FLFLVQW DC LA
Sbjct: 1   MRKSFKDSLKALEADIQFANTLASDYPREYDGACLQMRLSYSPAAQFFLFLVQWTDCHLA 60

Query: 61  GALGLLRILIYKAYADGKTTMCTRERKASIKEFYGVIFPSLLQLQRGITDVEDKKQKEIC 120
           GALGLLRILIYKAY DGKTTM   ERKASI+EFYGVIFPSLLQLQRGI D++++KQKEIC
Sbjct: 61  GALGLLRILIYKAYEDGKTTMSVHERKASIREFYGVIFPSLLQLQRGINDLDERKQKEIC 120

Query: 121 DAKYKKKGRMDKGKLSEIDIEREEECGICLEICCKIVLPDCNHSMCMRCYRNWRARSQSC 180
            ++YKKK  MD+GKLSEID+EREEECGICLEI  K+VLP CNHS+CMRCYRNWR RSQSC
Sbjct: 121 -SRYKKKDEMDRGKLSEIDLEREEECGICLEINTKVVLPKCNHSLCMRCYRNWRVRSQSC 179

Query: 181 PFCRDSLRRVNSGDLWIYTSEDDIVDLASISRENLKRLFMYIDKLPFITPNPTLVSYDPR 240
           PFCR+SL+RVNSGDLWIYTS+++IV L+SI+RENL+RLFMYIDKLP I P P   SYD R
Sbjct: 180 PFCRNSLKRVNSGDLWIYTSKNEIVALSSITRENLERLFMYIDKLPLIVPGPKFASYDSR 239

Query: 241 YR 242
           + 
Sbjct: 240 FH 241

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449483479|ref|XP_004156604.1| PREDICTED: uncharacterized LOC101207541 [Cucumis sativus]

 Score =  395 bits (1015), Expect = e-108,   Method: Compositional matrix adjust.
 Identities = 183/237 (77%), Positives = 213/237 (89%)

Query: 1   MRKSFKDSLKALEADIQLANTLASEYPREYDGACLQMRLSYSQAAHTFLFLVQWIDCRLA 60
           MRKSFKDSLKALEADIQ ANTLAS+YP+EYDGACLQMRLSYS AA  FLF VQW DC LA
Sbjct: 1   MRKSFKDSLKALEADIQFANTLASDYPKEYDGACLQMRLSYSPAAQFFLFFVQWTDCHLA 60

Query: 61  GALGLLRILIYKAYADGKTTMCTRERKASIKEFYGVIFPSLLQLQRGITDVEDKKQKEIC 120
           GALGLLRILIYKAY DGKTTM  +ERKAS+KEFYGVIFPSL+QLQ+GITD+E++KQ+E+ 
Sbjct: 61  GALGLLRILIYKAYEDGKTTMSIQERKASLKEFYGVIFPSLVQLQKGITDIEERKQREVY 120

Query: 121 DAKYKKKGRMDKGKLSEIDIEREEECGICLEICCKIVLPDCNHSMCMRCYRNWRARSQSC 180
            AK+K+  R++KGK+SEID+EREEECGIC+E+  K+VLP+CNHSMCM+CYR+WR RSQSC
Sbjct: 121 AAKFKRTDRLNKGKISEIDLEREEECGICMELNNKVVLPNCNHSMCMKCYRSWRTRSQSC 180

Query: 181 PFCRDSLRRVNSGDLWIYTSEDDIVDLASISRENLKRLFMYIDKLPFITPNPTLVSY 237
           PFCRDSL+RVNSGDLWI TS  +IVDL+ ISRENLKRLFM+I+KLP I P+P L+SY
Sbjct: 181 PFCRDSLKRVNSGDLWICTSSSEIVDLSFISRENLKRLFMFINKLPLIVPDPKLISY 237

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449467505|ref|XP_004151463.1| PREDICTED: uncharacterized protein LOC101207541 [Cucumis sativus]

 Score =  394 bits (1011), Expect = e-107,   Method: Compositional matrix adjust.
 Identities = 182/237 (76%), Positives = 213/237 (89%)

Query: 1   MRKSFKDSLKALEADIQLANTLASEYPREYDGACLQMRLSYSQAAHTFLFLVQWIDCRLA 60
           MRKSFKDSLKALEADIQ ANTLAS+YP+EYDGACLQMRLSYS AA  FLF VQW DC LA
Sbjct: 1   MRKSFKDSLKALEADIQFANTLASDYPKEYDGACLQMRLSYSPAAQFFLFFVQWTDCHLA 60

Query: 61  GALGLLRILIYKAYADGKTTMCTRERKASIKEFYGVIFPSLLQLQRGITDVEDKKQKEIC 120
           GALGLLRILIYKAY DGKTTM  +ERKAS+KEFYGVIFPSL+QLQ+GITD+E++KQ+E+ 
Sbjct: 61  GALGLLRILIYKAYEDGKTTMSIQERKASLKEFYGVIFPSLVQLQKGITDIEERKQREVY 120

Query: 121 DAKYKKKGRMDKGKLSEIDIEREEECGICLEICCKIVLPDCNHSMCMRCYRNWRARSQSC 180
            AK+K+  R++KGK+SEID+EREEECGIC+E+  K+VLP+CNHSMCM+CYR+WR RSQSC
Sbjct: 121 AAKFKRTDRLNKGKISEIDLEREEECGICMELNNKVVLPNCNHSMCMKCYRSWRTRSQSC 180

Query: 181 PFCRDSLRRVNSGDLWIYTSEDDIVDLASISRENLKRLFMYIDKLPFITPNPTLVSY 237
           PFCRDSL+RVNSGDLWI TS  +IVDL+ ISR+NLKRLFM+I+KLP I P+P L+SY
Sbjct: 181 PFCRDSLKRVNSGDLWICTSSSEIVDLSFISRDNLKRLFMFINKLPLIVPDPKLISY 237

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|312282839|dbj|BAJ34285.1| unnamed protein product [Thellungiella halophila]

 Score =  390 bits (1002), Expect = e-106,   Method: Compositional matrix adjust.
 Identities = 184/239 (76%), Positives = 205/239 (85%)

Query: 1   MRKSFKDSLKALEADIQLANTLASEYPREYDGACLQMRLSYSQAAHTFLFLVQWIDCRLA 60
           MRKSFKDSLKALEADIQ ANTLASEYP EYDG C+QMRLSYS AAH FLFL+QW DC  A
Sbjct: 1   MRKSFKDSLKALEADIQFANTLASEYPEEYDGGCVQMRLSYSPAAHLFLFLLQWTDCHFA 60

Query: 61  GALGLLRILIYKAYADGKTTMCTRERKASIKEFYGVIFPSLLQLQRGITDVEDKKQKEIC 120
           GALGLLRILIYKAY DGKTTM   ERKASIKEFY V+FPSLLQL  GITDVE++KQKEIC
Sbjct: 61  GALGLLRILIYKAYVDGKTTMSLHERKASIKEFYDVLFPSLLQLHGGITDVEERKQKEIC 120

Query: 121 DAKYKKKGRMDKGKLSEIDIEREEECGICLEICCKIVLPDCNHSMCMRCYRNWRARSQSC 180
           D +Y KK + +KGK+SEID+EREEECGICLE+  K+VLP CNHSMC+ CYRNWRARSQSC
Sbjct: 121 DKRYLKKDKTEKGKMSEIDLEREEECGICLEVRNKVVLPTCNHSMCINCYRNWRARSQSC 180

Query: 181 PFCRDSLRRVNSGDLWIYTSEDDIVDLASISRENLKRLFMYIDKLPFITPNPTLVSYDP 239
           PFCR SL+RVNSGDLW+YTS  +IV+L +I +ENLKRL MYIDKLP +  +PTLV Y P
Sbjct: 181 PFCRGSLKRVNSGDLWLYTSIKEIVELPAIYKENLKRLLMYIDKLPLVATDPTLVPYAP 239

Source: Thellungiella halophila

Species: Eutrema halophilum

Genus: Eutrema

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|15241003|ref|NP_195772.1| RING/U-box domain-containing protein [Arabidopsis thaliana] gi|7327811|emb|CAB82268.1| putative protein [Arabidopsis thaliana] gi|15292803|gb|AAK92770.1| unknown protein [Arabidopsis thaliana] gi|20258865|gb|AAM14104.1| unknown protein [Arabidopsis thaliana] gi|66865962|gb|AAY57615.1| RING finger family protein [Arabidopsis thaliana] gi|332002973|gb|AED90356.1| RING/U-box domain-containing protein [Arabidopsis thaliana]

 Score =  385 bits (990), Expect = e-105,   Method: Compositional matrix adjust.
 Identities = 183/239 (76%), Positives = 202/239 (84%)

Query: 1   MRKSFKDSLKALEADIQLANTLASEYPREYDGACLQMRLSYSQAAHTFLFLVQWIDCRLA 60
           MRKSFKDSLKALEADIQ ANTLASEYP EYDG  +QMRLSYS AAH FLFL+QW DC  A
Sbjct: 1   MRKSFKDSLKALEADIQFANTLASEYPEEYDGGYVQMRLSYSPAAHLFLFLLQWTDCHFA 60

Query: 61  GALGLLRILIYKAYADGKTTMCTRERKASIKEFYGVIFPSLLQLQRGITDVEDKKQKEIC 120
           GALGLLRILIYKAY DGKTTM   ERK SI+EFY V+FPSLLQL  GITDVE++KQKEIC
Sbjct: 61  GALGLLRILIYKAYVDGKTTMSLHERKTSIREFYDVLFPSLLQLHGGITDVEERKQKEIC 120

Query: 121 DAKYKKKGRMDKGKLSEIDIEREEECGICLEICCKIVLPDCNHSMCMRCYRNWRARSQSC 180
           D +Y+KK R DKGK+SEID+EREEECGICLEI  K+VLP CNHSMC+ CYRNWRARSQSC
Sbjct: 121 DKRYRKKDRTDKGKMSEIDLEREEECGICLEIRNKVVLPTCNHSMCINCYRNWRARSQSC 180

Query: 181 PFCRDSLRRVNSGDLWIYTSEDDIVDLASISRENLKRLFMYIDKLPFITPNPTLVSYDP 239
           PFCR SL+RVNSGDLWIYT   +I DL +I +ENLKRL +YIDKLP +T +P LV Y P
Sbjct: 181 PFCRGSLKRVNSGDLWIYTCSAEIADLPAIYKENLKRLLIYIDKLPLVTSDPNLVPYAP 239

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297810245|ref|XP_002873006.1| zinc finger family protein [Arabidopsis lyrata subsp. lyrata] gi|297318843|gb|EFH49265.1| zinc finger family protein [Arabidopsis lyrata subsp. lyrata]

 Score =  380 bits (976), Expect = e-103,   Method: Compositional matrix adjust.
 Identities = 179/239 (74%), Positives = 201/239 (84%)

Query: 1   MRKSFKDSLKALEADIQLANTLASEYPREYDGACLQMRLSYSQAAHTFLFLVQWIDCRLA 60
           MRKSFKDSLKALEADIQ ANTLASEYP EYDG  +QMRLSYS AAH FLFL+QW DC  A
Sbjct: 1   MRKSFKDSLKALEADIQFANTLASEYPEEYDGGYVQMRLSYSPAAHLFLFLLQWTDCHFA 60

Query: 61  GALGLLRILIYKAYADGKTTMCTRERKASIKEFYGVIFPSLLQLQRGITDVEDKKQKEIC 120
           G LGLLRILIYKAY DGKTTM   ERKASI++FY V+FPSLLQL  GITD+E++KQKEIC
Sbjct: 61  GTLGLLRILIYKAYVDGKTTMSLHERKASIRDFYDVLFPSLLQLHGGITDLEERKQKEIC 120

Query: 121 DAKYKKKGRMDKGKLSEIDIEREEECGICLEICCKIVLPDCNHSMCMRCYRNWRARSQSC 180
           D +Y+KK R +KGK+SEID+EREEECGICLEI  K+VLP CNHSMC+ CYRNWRARSQSC
Sbjct: 121 DKRYRKKDRTEKGKMSEIDLEREEECGICLEIQNKVVLPTCNHSMCINCYRNWRARSQSC 180

Query: 181 PFCRDSLRRVNSGDLWIYTSEDDIVDLASISRENLKRLFMYIDKLPFITPNPTLVSYDP 239
           PFCR SL+RVNSGDLWIYTS  +I DL +I +ENLKRL +YIDKLP +T +  L  Y P
Sbjct: 181 PFCRGSLKRVNSGDLWIYTSSAEIADLPAIYKENLKRLLIYIDKLPLVTSDSNLAPYAP 239

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225440678|ref|XP_002280036.1| PREDICTED: uncharacterized protein LOC100261401 isoform 2 [Vitis vinifera]

 Score =  379 bits (974), Expect = e-103,   Method: Compositional matrix adjust.
 Identities = 182/242 (75%), Positives = 203/242 (83%), Gaps = 12/242 (4%)

Query: 1   MRKSFKDSLKALEADIQLANTLASEYPREYDGACLQMRLSYSQAAHTFLFLVQWIDCRLA 60
           MRKSFKDSLKALEADIQ ANTLAS Y REYDGAC QMRLSYS AAH FLFLVQW DC LA
Sbjct: 1   MRKSFKDSLKALEADIQYANTLASGYQREYDGACFQMRLSYSPAAHLFLFLVQWTDCHLA 60

Query: 61  GALGLLRILIYKAYADGKTTMCTRERKASIKEFYGVIFPSLLQLQRGITDVEDKKQKEIC 120
           GALGLLRILIYKAY DGKTTM   ERKASI+EFYG            ITDVE++KQ+EIC
Sbjct: 61  GALGLLRILIYKAYVDGKTTMSVHERKASIREFYG------------ITDVEERKQREIC 108

Query: 121 DAKYKKKGRMDKGKLSEIDIEREEECGICLEICCKIVLPDCNHSMCMRCYRNWRARSQSC 180
            AKYK+K  MDKGKLSE+D+EREEECGIC+EI  K+VLP+CNHS+CM+CYRNWR RSQSC
Sbjct: 109 AAKYKRKDDMDKGKLSEVDVEREEECGICMEISSKVVLPNCNHSLCMKCYRNWRPRSQSC 168

Query: 181 PFCRDSLRRVNSGDLWIYTSEDDIVDLASISRENLKRLFMYIDKLPFITPNPTLVSYDPR 240
           PFCRDSL+RV+SGDLWIY +  +I DL+SISRENLKRLFM+IDKLP I P+P  +SYDP 
Sbjct: 169 PFCRDSLKRVSSGDLWIYMNSHEIDDLSSISRENLKRLFMFIDKLPLIVPDPMFMSYDPP 228

Query: 241 YR 242
           +R
Sbjct: 229 FR 230

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	242
TAIR|locus:2149750	242	AIRP2 "ABA Insensitive RING Pr	0.987	0.987	0.631	4.3e-77
TAIR|locus:505006703	242	AT5G58787 "AT5G58787" [Arabido	0.958	0.958	0.561	4.5e-66
TAIR|locus:505006120	260	AT1G13195 [Arabidopsis thalian	0.334	0.311	0.543	2.8e-42
TAIR|locus:2024026	251	AT1G24440 [Arabidopsis thalian	0.979	0.944	0.381	7.5e-41
UNIPROTKB|Q5ZM74	230	RNF141 "RING finger protein 14	0.185	0.195	0.411	0.00027

TAIR|locus:2149750 AIRP2 "ABA Insensitive RING Protein 2" [Arabidopsis thaliana (taxid:3702)]

 Score = 776 (278.2 bits), Expect = 4.3e-77, P = 4.3e-77
 Identities = 151/239 (63%), Positives = 166/239 (69%)

Query:     1 MRKSFKDSLKALEADIQLANTLASEYPREYDGACLQMRLSYSQAAHTFLFLVQWIDCXXX 60
             MRKSFKDSLKALEADIQ ANTLASEYP EYDG  +QMRLSYS AAH FLFL+QW DC   
Sbjct:     1 MRKSFKDSLKALEADIQFANTLASEYPEEYDGGYVQMRLSYSPAAHLFLFLLQWTDCHFA 60

Query:    61 XXXXXXXXXXYKAYADGKTTMCTRERKASIKEFYGVIFPSLLQLQRGITDVEDKKQKEIC 120
                       YKAY DGKTTM   ERK SI+EFY V+FPSLLQL  GITDVE++KQKEIC
Sbjct:    61 GALGLLRILIYKAYVDGKTTMSLHERKTSIREFYDVLFPSLLQLHGGITDVEERKQKEIC 120

Query:   121 DAXXXXXXXXXXXXLSEIDXXXXXXXXXXXXXXXXXVLPDCNHSMCMRCYRNWRARSQSC 180
             D             +SEID                 VLP CNHSMC+ CYRNWRARSQSC
Sbjct:   121 DKRYRKKDRTDKGKMSEIDLEREEECGICLEIRNKVVLPTCNHSMCINCYRNWRARSQSC 180

Query:   181 PFCRDSLRRVNSGDLWIYTSEDDIVDLASISRENLKRLFMYIDKLPFITPNPTLVSYDP 239
             PFCR SL+RVNSGDLWIYT   +I DL +I +ENLKRL +YIDKLP +T +P LV Y P
Sbjct:   181 PFCRGSLKRVNSGDLWIYTCSAEIADLPAIYKENLKRLLIYIDKLPLVTSDPNLVPYAP 239

GO:0005634 "nucleus" evidence=ISM

GO:0008270 "zinc ion binding" evidence=IEA;ISS

GO:0005829 "cytosol" evidence=IDA

GO:0015996 "chlorophyll catabolic process" evidence=RCA

TAIR|locus:505006703 AT5G58787 "AT5G58787" [Arabidopsis thaliana (taxid:3702)]

 Score = 672 (241.6 bits), Expect = 4.5e-66, P = 4.5e-66
 Identities = 133/237 (56%), Positives = 159/237 (67%)

Query:     4 SFKDSLKALEADIQLANTLASEYPREYDGACLQMRLSYSQAAHTFLFLVQWIDCXXXXXX 63
             SFKDSLKALEADIQ ANTLA +YPRE DGA +QMRLSYS  A  FLFLVQW DC      
Sbjct:     5 SFKDSLKALEADIQHANTLALDYPREKDGARVQMRLSYSPTAQFFLFLVQWTDCKLAGFL 64

Query:    64 XXXXXXXYKAYADGKTTMCTRERKASIKEFYGVIFPSLLQLQRGITDVEDKKQKEICDAX 123
                    Y  YADGKTTM   ERKASI+EF  VI PSL QLQRG+TD++D KQKE+C   
Sbjct:    65 GLLRVLIYMTYADGKTTMSVYERKASIREFQAVILPSLSQLQRGVTDIDDSKQKEVCKMR 124

Query:   124 XXXXXXXXXXXLSEIDXXXXXXXXXXXXXXXXXVLPDCNHSMCMRCYRNWRARSQSCPFC 183
                        +SEI+                 VLP+C HS+C++CYR+WR RSQSCPFC
Sbjct:   125 YRKKDESE---MSEIEIEREEECGICMEMNSKVVLPNCTHSLCIKCYRDWRGRSQSCPFC 181

Query:   184 RDSLRRVNSGDLWIYTSEDDIVDLASISRENLKRLFMYIDKLPFITPNPTLVS--YD 238
             RDSL+RV+SGDLW++  ++D V+L +I+REN KRLFMYI+KLP + P+    S  YD
Sbjct:   182 RDSLKRVDSGDLWMFLDQNDTVNLTAIARENQKRLFMYIEKLPLVVPDQVYASSPYD 238

GO:0005575 "cellular_component" evidence=ND

GO:0008150 "biological_process" evidence=ND

GO:0008270 "zinc ion binding" evidence=IEA;ISS

TAIR|locus:505006120 AT1G13195 [Arabidopsis thaliana (taxid:3702)]

 Score = 261 (96.9 bits), Expect = 2.8e-42, Sum P(2) = 2.8e-42
 Identities = 44/81 (54%), Positives = 59/81 (72%)

Query:   157 VLPDCNHSMCMRCYRNWRARSQSCPFCRDSLRRVNSGDLWIYTSEDDIVDLASISRENLK 216
             VLP+C HSMC++CYRNW  +SQSCPFCR S++RVNS DLW+   ++D+VD  + SRE+L 
Sbjct:   173 VLPNCCHSMCIKCYRNWNLKSQSCPFCRGSMKRVNSEDLWVLAGDNDVVDTRTASREDLF 232

Query:   217 RLFMYIDKLPFITPNPTLVSY 237
             R ++YI+ LP   P    V Y
Sbjct:   233 RFYLYINSLPKDYPEALFVVY 253

GO:0005634 "nucleus" evidence=ISM

GO:0008270 "zinc ion binding" evidence=IEA;ISS

GO:0010200 "response to chitin" evidence=RCA

TAIR|locus:2024026 AT1G24440 [Arabidopsis thaliana (taxid:3702)]

 Score = 434 (157.8 bits), Expect = 7.5e-41, P = 7.5e-41
 Identities = 92/241 (38%), Positives = 132/241 (54%)

Query:     2 RKSFKDSLKALEADIQLANTLASEYPREYDGACLQMRLSYSQAAHTFLFLVQWID--CXX 59
             + S++DSLK LEADI+ AN LA+E P    G  LQM+L  S  A  F+FL+QW+D  C  
Sbjct:     7 KSSYRDSLKILEADIEHANGLAAEIPMGKSGVRLQMKLVCSNLAPFFIFLLQWMDFSCLL 66

Query:    60 XXXXXXXXXXXYKAYADGKTTMCTRERKASIKEFYGVIFPSLLQLQRGITDVEDKK--QK 117
                        YK  ADG+       RKA+I+EFYGVI PSL +L     D+ D+     
Sbjct:    67 PRYFDFFHILIYKVRADGRWNRSRYGRKATIREFYGVILPSLERLHINFADLPDESLWYP 126

Query:   118 EICDAXXXXXXXXXXXXLSEIDXXXXXXXXXXXXXXXXXVLPDCNHSMCMRCYRNWRARS 177
                              ++ ID                 VLP+C H+MC++CYRNW  +S
Sbjct:   127 NPKAITKKQYDIEGSRYMNSIDLEREDECGICLEPCTKMVLPNCCHAMCIKCYRNWNTKS 186

Query:   178 QSCPFCRDSLRRVNSGDLWIYTSEDDIVDLASISRENLKRLFMYIDKLPFITPNPTLVSY 237
             +SCPFCR S++RVNS DLW+ T ++D+VD  ++++E+L R +++I+ LP   P    + Y
Sbjct:   187 ESCPFCRGSIKRVNSEDLWVLTCDEDVVDPETVTKEDLLRFYLHINSLPKDYPEAAFLVY 246

Query:   238 D 238
             +
Sbjct:   247 N 247

GO:0005634 "nucleus" evidence=ISM

GO:0008270 "zinc ion binding" evidence=IEA

UNIPROTKB|Q5ZM74 RNF141 "RING finger protein 141" [Gallus gallus (taxid:9031)]

 Score = 109 (43.4 bits), Expect = 0.00027, P = 0.00027
 Identities = 21/51 (41%), Positives = 29/51 (56%)

Query:   157 VLPDCNHSMCMRCYRNWRARSQSCPFCRDSLRRVNSGDLWIYT---SEDDI 204
             +LP C HS C +C   W  R +SCP CR  +    +GD W+ +   +EDDI
Sbjct:   166 ILP-CAHSFCQKCIDKWSDRHRSCPVCRRQV--TGAGDSWVVSDAPTEDDI 213


Parameters:
  V=100
  filter=SEG
  E=0.001

  ctxfactor=1.00

  Query                        -----  As Used  -----    -----  Computed  ----
  Frame  MatID Matrix name     Lambda    K       H      Lambda    K       H
   +0      0   BLOSUM62        0.324   0.136   0.424    same    same    same
               Q=9,R=2         0.244   0.0300  0.180     n/a     n/a     n/a

  Query
  Frame  MatID  Length  Eff.Length     E     S W   T  X   E2     S2
   +0      0      242       200   0.00087  111 3  11 22  0.42    32
                                                     31  0.45    35


Statistics:

  Database:  /share/blast/go-seqdb.fasta
   Title:  go_20130330-seqdb.fasta
   Posted:  5:47:42 AM PDT Apr 1, 2013
   Created:  5:47:42 AM PDT Apr 1, 2013
   Format:  XDF-1
   # of letters in database:  169,044,731
   # of sequences in database:  368,745
   # of database sequences satisfying E:  5
  No. of states in DFA:  614 (65 KB)
  Total size of DFA:  188 KB (2108 KB)
  Time to generate neighborhood:  0.00u 0.00s 0.00t   Elapsed:  00:00:01
  No. of threads or processors used:  24
  Search cpu time:  15.23u 0.08s 15.31t   Elapsed:  00:00:13
  Total cpu time:  15.23u 0.08s 15.31t   Elapsed:  00:00:15
  Start:  Fri May 10 01:01:13 2013   End:  Fri May 10 01:01:28 2013

GO:0008270 "zinc ion binding" evidence=IEA

GO:0003677 "DNA binding" evidence=IEA

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

Prediction Level	EC number	Confidence of Prediction
3rd Layer	6.3.2	LOW CONFIDENCE prediction!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	242
cd00162	45	cd00162, RING, RING-finger (Really Interesting New	8e-08
PHA02929	238	PHA02929, PHA02929, N1R/p28-like protein; Provisio	1e-07
pfam13639	46	pfam13639, zf-RING_2, Ring finger domain	4e-07
pfam13923	45	pfam13923, zf-C3HC4_2, Zinc finger, C3HC4 type (RI	6e-07
smart00184	40	smart00184, RING, Ring finger	1e-05
pfam12678	73	pfam12678, zf-rbx1, RING-H2 zinc finger	5e-05
pfam13920	49	pfam13920, zf-C3HC4_3, Zinc finger, C3HC4 type (RI	1e-04
PHA02926	242	PHA02926, PHA02926, zinc finger-like protein; Prov	1e-04
pfam12861	85	pfam12861, zf-Apc11, Anaphase-promoting complex su	4e-04
COG5236	493	COG5236, COG5236, Uncharacterized conserved protei	8e-04
COG5243	491	COG5243, HRD1, HRD ubiquitin ligase complex, ER me	0.001
pfam00097	40	pfam00097, zf-C3HC4, Zinc finger, C3HC4 type (RING	0.001

>gnl|CDD|238093 cd00162, RING, RING-finger (Really Interesting New Gene) domain, a specialized type of Zn-finger of 40 to 60 residues that binds two atoms of zinc; defined by the 'cross-brace' motif C-X2-C-X(9-39)-C-X(1-3)- H-X(2-3)-(N/C/H)-X2-C-X(4-48)C-X2-C; probably involved in mediating protein-protein interactions; identified in a proteins with a wide range of functions such as viral replication, signal transduction, and development; has two variants, the C3HC4-type and a C3H2C3-type (RING-H2 finger), which have different cysteine/histidine pattern; a subset of RINGs are associated with B-Boxes (C-X2-H-X7-C-X7-C-X2-C-H-X2-H)

 Score = 47.1 bits (112), Expect = 8e-08
 Identities = 17/45 (37%), Positives = 21/45 (46%), Gaps = 2/45 (4%)

Query: 145 ECGICLE-ICCKIVLPDCNHSMCMRCYRNWRARSQ-SCPFCRDSL 187
           EC ICLE     +VL  C H  C  C   W    + +CP CR  +
Sbjct: 1   ECPICLEEFREPVVLLPCGHVFCRSCIDKWLKSGKNTCPLCRTPI 45

Length = 45

>gnl|CDD|222944 PHA02929, PHA02929, N1R/p28-like protein; Provisional

 Score = 50.9 bits (122), Expect = 1e-07
 Identities = 25/96 (26%), Positives = 42/96 (43%), Gaps = 19/96 (19%)

Query: 108 ITDVEDKKQKEICDAKYKKKGRMDKGKLSEI-----------DIEREEECGICLEICCKI 156
           I  +  +K++++  A   KKG+  K  L  I           +  +++EC IC+E     
Sbjct: 128 INYIYMRKEEDMFYAIINKKGKNYKKFLKTIPSVLSEYEKLYNRSKDKECAICMEKVYDK 187

Query: 157 --------VLPDCNHSMCMRCYRNWRARSQSCPFCR 184
                   +L +CNH  C+ C   W+    +CP CR
Sbjct: 188 EIKNMYFGILSNCNHVFCIECIDIWKKEKNTCPVCR 223

Length = 238

>gnl|CDD|222279 pfam13639, zf-RING_2, Ring finger domain

 Score = 45.5 bits (108), Expect = 4e-07
 Identities = 15/44 (34%), Positives = 21/44 (47%), Gaps = 3/44 (6%)

Query: 144 EECGICLEICC---KIVLPDCNHSMCMRCYRNWRARSQSCPFCR 184
           +EC ICL+      ++V+  C H     C   W   S +CP CR
Sbjct: 1   DECPICLDEFEPGEEVVVLPCGHVFHKECLDKWLRSSNTCPLCR 44

Length = 46

>gnl|CDD|206094 pfam13923, zf-C3HC4_2, Zinc finger, C3HC4 type (RING finger)

 Score = 44.8 bits (106), Expect = 6e-07
 Identities = 16/43 (37%), Positives = 21/43 (48%), Gaps = 1/43 (2%)

Query: 143 EEECGICLEICCK-IVLPDCNHSMCMRCYRNWRARSQSCPFCR 184
           E EC ICL++    +VL  C H  C  C   +  +   CP CR
Sbjct: 2   ELECPICLDLLRDPVVLTPCGHVFCRECILRYLKKKSKCPICR 44

Length = 45

>gnl|CDD|214546 smart00184, RING, Ring finger

 Score = 41.0 bits (96), Expect = 1e-05
 Identities = 16/40 (40%), Positives = 21/40 (52%), Gaps = 2/40 (5%)

Query: 146 CGICLEICCK-IVLPDCNHSMCMRCYRNW-RARSQSCPFC 183
           C ICLE   K  V+  C H+ C  C R W  + + +CP C
Sbjct: 1   CPICLEEYLKDPVILPCGHTFCRSCIRKWLESGNNTCPIC 40

E3 ubiquitin-protein ligase activity is intrinsic to the RING domain of c-Cbl and is likely to be a general function of this domain; Various RING fingers exhibit binding activity towards E2 ubiquitin-conjugating enzymes (Ubc' s). Length = 40

>gnl|CDD|221705 pfam12678, zf-rbx1, RING-H2 zinc finger

 Score = 40.1 bits (94), Expect = 5e-05
 Identities = 14/55 (25%), Positives = 21/55 (38%), Gaps = 13/55 (23%)

Query: 143 EEECGICL----EIC---------CKIVLPDCNHSMCMRCYRNWRARSQSCPFCR 184
           ++ C IC       C         C +V  +C H+  + C   W     +CP CR
Sbjct: 19  DDVCAICRNHFDGTCPECKSPGDDCPVVWGECGHAFHLHCISRWLKTRNTCPLCR 73

There are 8 cysteine/ histidine residues which are proposed to be the conserved residues involved in zinc binding. The protein, of which this domain is the conserved region, participates in diverse functions relevant to chromosome metabolism and cell cycle control. Length = 73

>gnl|CDD|222454 pfam13920, zf-C3HC4_3, Zinc finger, C3HC4 type (RING finger)

 Score = 38.5 bits (90), Expect = 1e-04
 Identities = 15/44 (34%), Positives = 21/44 (47%), Gaps = 2/44 (4%)

Query: 142 REEECGICLEICCKIVLPDCNH-SMCMRCYRNWRARSQSCPFCR 184
            ++ C ICLE    +V   C H  +C  C +  R   + CP CR
Sbjct: 1   EDDLCVICLERPRNVVFLPCGHLCLCEECAKRLR-SKKKCPICR 43

Length = 49

>gnl|CDD|165237 PHA02926, PHA02926, zinc finger-like protein; Provisional

 Score = 42.0 bits (98), Expect = 1e-04
 Identities = 22/72 (30%), Positives = 31/72 (43%), Gaps = 15/72 (20%)

Query: 140 IEREEECGICLEICCKI---------VLPDCNHSMCMRCYRNW-RAR-----SQSCPFCR 184
           + +E+ECGIC E+             +L  CNH  C+ C   W R R     S +CP CR
Sbjct: 167 VSKEKECGICYEVVYSKRLENDRYFGLLDSCNHIFCITCINIWHRTRRETGASDNCPICR 226

Query: 185 DSLRRVNSGDLW 196
              R +     +
Sbjct: 227 TRFRNITMSKFY 238

Length = 242

>gnl|CDD|193335 pfam12861, zf-Apc11, Anaphase-promoting complex subunit 11 RING-H2 finger

 Score = 37.8 bits (88), Expect = 4e-04
 Identities = 19/64 (29%), Positives = 24/64 (37%), Gaps = 16/64 (25%)

Query: 139 DIEREEECGIC-------LEIC------CKIVLPDCNHSMCMRCYRNWRARSQS---CPF 182
           D   ++ CGIC          C      C +V   C H+  M C   W A   S   CP 
Sbjct: 17  DTPSDDVCGICRVSFDGTCPQCKFPGDDCPLVWGKCKHNFHMHCILKWLATETSKGLCPM 76

Query: 183 CRDS 186
           CR +
Sbjct: 77  CRQT 80

Apc11 is one of the subunits of the anaphase-promoting complex or cyclosome. The APC subunits are cullin family proteins with ubiquitin ligase activity. Polyubiquitination marks proteins for degradation by the 26S proteasome and is carried out by a cascade of enzymes that includes ubiquitin-activating enzymes (E1s), ubiquitin-conjugating enzymes (E2s), and ubiquitin ligases (E3s). Apc11 acts as an E3 enzyme and is responsible for recruiting E2s to the APC and for mediating the subsequent transfer of ubiquitin to APC substrates in vivo. In Saccharomyces cerevisiae this RING-H2 finger protein defines the minimal ubiquitin ligase activity of the APC, and the integrity of the RING-H2 finger is essential for budding yeast cell viability. Length = 85

>gnl|CDD|227561 COG5236, COG5236, Uncharacterized conserved protein, contains RING Zn-finger [General function prediction only]

 Score = 40.0 bits (93), Expect = 8e-04
 Identities = 14/46 (30%), Positives = 16/46 (34%), Gaps = 2/46 (4%)

Query: 141 EREEECGICLEICCKIVLPDCNHSMCMRCYRNWRA--RSQSCPFCR 184
           E    C IC           C H +C  C    RA    + CP CR
Sbjct: 59  EENMNCQICAGSTTYSARYPCGHQICHACAVRLRALYMQKGCPLCR 104

Length = 493

>gnl|CDD|227568 COG5243, HRD1, HRD ubiquitin ligase complex, ER membrane component [Posttranslational modification, protein turnover, chaperones]

 Score = 39.6 bits (92), Expect = 0.001
 Identities = 11/27 (40%), Positives = 16/27 (59%)

Query: 161 CNHSMCMRCYRNWRARSQSCPFCRDSL 187
           C H + + C +NW  R Q+CP CR  +
Sbjct: 318 CGHILHLHCLKNWLERQQTCPICRRPV 344

Length = 491

>gnl|CDD|215715 pfam00097, zf-C3HC4, Zinc finger, C3HC4 type (RING finger)

 Score = 35.1 bits (81), Expect = 0.001
 Identities = 15/41 (36%), Positives = 21/41 (51%), Gaps = 4/41 (9%)

Query: 146 CGICLE--ICCKIVLPDCNHSMCMRCYRNW-RARSQSCPFC 183
           C ICLE       +LP C H  C +C  +W  + + +CP C
Sbjct: 1   CPICLEEPKDPVTILP-CGHLFCSKCILSWLESGNVTCPLC 40

The C3HC4 type zinc-finger (RING finger) is a cysteine-rich domain of 40 to 60 residues that coordinates two zinc ions, and has the consensus sequence: C-X2-C-X(9-39)-C-X(1-3)-H-X(2-3)-C-X2-C-X(4-48)-C-X2-C where X is any amino acid. Many proteins containing a RING finger play a key role in the ubiquitination pathway. Length = 40

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	242
KOG1039	344	consensus Predicted E3 ubiquitin ligase [Posttrans	99.77
PHA02929	238	N1R/p28-like protein; Provisional	99.23
PF13920	50	zf-C3HC4_3: Zinc finger, C3HC4 type (RING finger);	99.22
PF13639	44	zf-RING_2: Ring finger domain; PDB: 2KIZ_A 4EPO_C	99.21
PLN03208	193	E3 ubiquitin-protein ligase RMA2; Provisional	99.2
PF15227	42	zf-C3HC4_4: zinc finger of C3HC4-type, RING; PDB:	99.19
PHA02926	242	zinc finger-like protein; Provisional	99.13
PF13923	39	zf-C3HC4_2: Zinc finger, C3HC4 type (RING finger);	99.09
KOG0823	230	consensus Predicted E3 ubiquitin ligase [Posttrans	99.06
smart00504	63	Ubox Modified RING finger domain. Modified RING fi	99.02
TIGR00599	397	rad18 DNA repair protein rad18. This family is bas	99.01
KOG0317	293	consensus Predicted E3 ubiquitin ligase, integral	99.0
PF12678	73	zf-rbx1: RING-H2 zinc finger; InterPro: IPR024766	98.97
COG5243	491	HRD1 HRD ubiquitin ligase complex, ER membrane com	98.96
KOG0287	442	consensus Postreplication repair protein RAD18 [Re	98.93
PF00097	41	zf-C3HC4: Zinc finger, C3HC4 type (RING finger); I	98.92
cd00162	45	RING RING-finger (Really Interesting New Gene) dom	98.86
KOG0320	187	consensus Predicted E3 ubiquitin ligase [Posttrans	98.83
COG5432	391	RAD18 RING-finger-containing E3 ubiquitin ligase [	98.79
PF14634	44	zf-RING_5: zinc-RING finger domain	98.77
KOG4628	348	consensus Predicted E3 ubiquitin ligase [Posttrans	98.77
smart00184	39	RING Ring finger. E3 ubiquitin-protein ligase acti	98.73
PF12861	85	zf-Apc11: Anaphase-promoting complex subunit 11 RI	98.7
PF04564	73	U-box: U-box domain; InterPro: IPR003613 Quality c	98.69
KOG2164	513	consensus Predicted E3 ubiquitin ligase [Posttrans	98.68
COG5540	374	RING-finger-containing ubiquitin ligase [Posttrans	98.6
PF13445	43	zf-RING_UBOX: RING-type zinc-finger; PDB: 2CT2_A.	98.6
COG5574	271	PEX10 RING-finger-containing E3 ubiquitin ligase [	98.57
KOG0802	543	consensus E3 ubiquitin ligase [Posttranslational m	98.46
KOG2177	386	consensus Predicted E3 ubiquitin ligase [Posttrans	98.43
KOG4172	62	consensus Predicted E3 ubiquitin ligase [Posttrans	98.43
TIGR00570	309	cdk7 CDK-activating kinase assembly factor MAT1. A	98.26
PF14835	65	zf-RING_6: zf-RING of BARD1-type protein; PDB: 1JM	98.22
KOG0978	698	consensus E3 ubiquitin ligase involved in syntaxin	98.13
KOG4265	349	consensus Predicted E3 ubiquitin ligase [Posttrans	98.09
KOG4159	398	consensus Predicted E3 ubiquitin ligase [Posttrans	98.04
KOG1002	791	consensus Nucleotide excision repair protein RAD16	98.02
KOG0824	324	consensus Predicted E3 ubiquitin ligase [Posttrans	97.96
KOG0828	636	consensus Predicted E3 ubiquitin ligase [Posttrans	97.95
KOG1785	563	consensus Tyrosine kinase negative regulator CBL [	97.87
KOG0311	381	consensus Predicted E3 ubiquitin ligase [Posttrans	97.83
COG5219	1525	Uncharacterized conserved protein, contains RING Z	97.82
COG5194	88	APC11 Component of SCF ubiquitin ligase and anapha	97.72
KOG2660	331	consensus Locus-specific chromosome binding protei	97.71
PF11793	70	FANCL_C: FANCL C-terminal domain; PDB: 3K1L_A.	97.66
KOG1734	328	consensus Predicted RING-containing E3 ubiquitin l	97.63
KOG1493	84	consensus Anaphase-promoting complex (APC), subuni	97.62
KOG0804	493	consensus Cytoplasmic Zn-finger protein BRAP2 (BRC	97.55
COG5152	259	Uncharacterized conserved protein, contains RING a	97.51
KOG0297	391	consensus TNF receptor-associated factor [Signal t	97.49
KOG2879	298	consensus Predicted E3 ubiquitin ligase [Posttrans	97.36
KOG0827	465	consensus Predicted E3 ubiquitin ligase [Posttrans	97.32
smart00744	49	RINGv The RING-variant domain is a C4HC3 zinc-fing	97.32
KOG1813	313	consensus Predicted E3 ubiquitin ligase [Posttrans	97.27
PF11789	57	zf-Nse: Zinc-finger of the MIZ type in Nse subunit	97.26
KOG4692	489	consensus Predicted E3 ubiquitin ligase [Posttrans	97.16
PHA03096	284	p28-like protein; Provisional	97.12
KOG4275	350	consensus Predicted E3 ubiquitin ligase [Posttrans	96.96
KOG0825	1134	consensus PHD Zn-finger protein [General function	96.9
KOG2930	114	consensus SCF ubiquitin ligase, Rbx1 component [Po	96.79
KOG1814	445	consensus Predicted E3 ubiquitin ligase [Posttrans	96.73
KOG4739	233	consensus Uncharacterized protein involved in syna	96.62
KOG1571	355	consensus Predicted E3 ubiquitin ligase [Posttrans	96.62
COG5236	493	Uncharacterized conserved protein, contains RING Z	96.6
KOG1645	463	consensus RING-finger-containing E3 ubiquitin liga	96.46
PF14447	55	Prok-RING_4: Prokaryotic RING finger family 4	96.43
KOG4185	296	consensus Predicted E3 ubiquitin ligase [Posttrans	96.36
KOG2114	933	consensus Vacuolar assembly/sorting protein PEP5/V	95.94
KOG1941	518	consensus Acetylcholine receptor-associated protei	95.93
KOG1001	674	consensus Helicase-like transcription factor HLTF/	95.78
KOG1428	3738	consensus Inhibitor of type V adenylyl cyclases/Ne	95.73
PF10367	109	Vps39_2: Vacuolar sorting protein 39 domain 2; Int	95.69
KOG3002	299	consensus Zn finger protein [General function pred	95.52
PF04641	260	Rtf2: Rtf2 RING-finger	95.39
PF14570	48	zf-RING_4: RING/Ubox like zinc-binding domain; PDB	95.13
KOG4367	699	consensus Predicted Zn-finger protein [Function un	95.12
KOG3039	303	consensus Uncharacterized conserved protein [Funct	95.09
PHA02825	162	LAP/PHD finger-like protein; Provisional	94.98
COG5222	427	Uncharacterized conserved protein, contains RING Z	94.88
PF07800	162	DUF1644: Protein of unknown function (DUF1644); In	94.86
PF05290	140	Baculo_IE-1: Baculovirus immediate-early protein (	94.66
KOG4445	368	consensus Uncharacterized conserved protein, conta	94.45
KOG3800	300	consensus Predicted E3 ubiquitin ligase containing	94.4
KOG0826	357	consensus Predicted E3 ubiquitin ligase involved i	93.82
PHA02862	156	5L protein; Provisional	93.76
KOG2034	911	consensus Vacuolar sorting protein PEP3/VPS18 [Int	93.04
KOG2932	389	consensus E3 ubiquitin ligase involved in ubiquiti	93.03
KOG3268	234	consensus Predicted E3 ubiquitin ligase [Posttrans	93.02
KOG3970	299	consensus Predicted E3 ubiquitin ligase [Posttrans	92.79
KOG1100	207	consensus Predicted E3 ubiquitin ligase [Posttrans	92.63
PF08746	43	zf-RING-like: RING-like domain; InterPro: IPR01485	92.49
PF03854	50	zf-P11: P-11 zinc finger; InterPro: IPR003224 Zinc	92.48
PF10272	358	Tmpp129: Putative transmembrane protein precursor;	92.21
PF05883	134	Baculo_RING: Baculovirus U-box/Ring-like domain; I	91.93
KOG1952	950	consensus Transcription factor NF-X1, contains NFX	91.86
KOG1940	276	consensus Zn-finger protein [General function pred	91.59
COG5175	480	MOT2 Transcriptional repressor [Transcription]	91.52
KOG0298	1394	consensus DEAD box-containing helicase-like transc	91.19
KOG4362	684	consensus Transcriptional regulator BRCA1 [Replica	90.18
PF12906	47	RINGv: RING-variant domain; PDB: 2D8S_A 1VYX_A.	89.88
COG5220	314	TFB3 Cdk activating kinase (CAK)/RNA polymerase II	89.87
KOG3161	861	consensus Predicted E3 ubiquitin ligase [Posttrans	89.06
KOG2817	394	consensus Predicted E3 ubiquitin ligase [Posttrans	89.01
KOG1815	444	consensus Predicted E3 ubiquitin ligase [Posttrans	87.07
PF02891	50	zf-MIZ: MIZ/SP-RING zinc finger; InterPro: IPR0041	85.94
PF14569	80	zf-UDP: Zinc-binding RING-finger; PDB: 1WEO_A.	85.36
KOG1812	384	consensus Predicted E3 ubiquitin ligase [Posttrans	84.56
KOG3899	381	consensus Uncharacterized conserved protein [Funct	84.17
KOG0309	1081	consensus Conserved WD40 repeat-containing protein	83.19

>KOG1039 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

Probab=99.77  E-value=1.8e-19  Score=162.77  Aligned_cols=223  Identities=28%  Similarity=0.425  Sum_probs=169.2

Q ss_pred             HHhhhhhHhhhhhCCCCCCCceeeeEEeeccc-hhHHHHhHhhcchhhhhhcchheeeeeeec-cCCCcccchhhh--hc
Q 026172           13 EADIQLANTLASEYPREYDGACLQMRLSYSQA-AHTFLFLVQWIDCRLAGALGLLRILIYKAY-ADGKTTMCTRER--KA   88 (242)
Q Consensus        13 ~~~i~~an~l~~~~~~~~~g~~~qm~ls~~p~-a~~~l~~v~~~~~~la~~~gl~riliy~v~-~dg~~~~~~~~r--k~   88 (242)
                      +.+++++ |++..+|+++.+..-+||+++++. ..+...++.|+++..++ .|+.++++|..+ .++...++...+  ..
T Consensus         2 d~~~~~~-tic~~~~~g~c~~g~~cr~~h~~~~~~~~~~~~~~~s~~~~~-~~~~~~~~~~~~~~~~s~~~s~~~~~~~~   79 (344)
T KOG1039|consen    2 DLSLSQE-TICKYYQKGNCKFGDLCRLSHSLPDEEFATLLTPTTSSAAAS-TGLSQSLIWANAVADASATMSVSSRPVLT   79 (344)
T ss_pred             ccccccc-hhhhhcccccccccceeeeeccCchhhccccccccccccccc-cccchhhcccchhhccccccchhcccchh
Confidence            4678888 999999999999999999999999 78888889999988777 788889999888 888888888777  67


Q ss_pred             hHHHHHhhhhhh---------HHHhhhcCCChHHH----------HHHHHhHHHHhhhccccc--------CCCccccCC
Q 026172           89 SIKEFYGVIFPS---------LLQLQRGITDVEDK----------KQKEICDAKYKKKGRMDK--------GKLSEIDIE  141 (242)
Q Consensus        89 sl~efy~~i~~s---------l~ql~~~~~~~~~~----------~~~~~~~e~~~~~~~~~~--------~~~~~~~~~  141 (242)
                      ..+++++..+++         +.+.+.+...+...          .+...+...++..+....        ++.......
T Consensus        80 ~~~~s~~~~~~s~~~~~~~~~~~~~~~g~~~~~~~~~~~~~c~l~~~~pi~~~~~~~~~~~~~~~~~~~~~e~~~a~~~s  159 (344)
T KOG1039|consen   80 AIRASSSISEPSSTQENPYSNHGQCRFGNGDVTLNGNNPESCGLGTQHPICKRQYKNSMKRGSSCALSSAMERSFALQKS  159 (344)
T ss_pred             hhhhhhccccccccccCccccccccccCCcccccccccccccccccccchhHHHHhhhhcccccccchHhhhhccCcCcc
Confidence            888888888777         32333222222111          112222233333322221        111122224


Q ss_pred             ccCeecccccccccce--------ecCCCCcchHHHHHHHhc--c-----CCCCcCcccccccccCCCccccCCchhhhh
Q 026172          142 REEECGICLEICCKIV--------LPDCNHSMCMRCYRNWRA--R-----SQSCPFCRDSLRRVNSGDLWIYTSEDDIVD  206 (242)
Q Consensus       142 ~~~~C~ICl~~~~~~v--------~~~CgH~fC~~Ci~~w~~--~-----~~~CP~CR~~l~~~~~~~~~~~~~~~~~~d  206 (242)
                      .+..|+||++...+..        +++|.|.||.+||+.|..  +     ++.||+||.+...+++..+|+.++..+...
T Consensus       160 ~~k~CGICme~i~ek~~~~~rfgilpnC~H~~Cl~Cir~wr~~~q~~~~~sksCP~CRv~s~~v~pS~~Wv~t~~~k~~l  239 (344)
T KOG1039|consen  160 SEKECGICMETINEKAASERRFGILPNCNHSFCLNCIRKWRQATQFESKTSKSCPFCRVPSSFVNPSSFWVETKEEKQKL  239 (344)
T ss_pred             ccccceehhhhccccchhhhhcccCCCcchhhhhcHhHhhhhhhccccccccCCCcccCccccccccceeeeeccccccc
Confidence            5889999999987654        489999999999999984  4     689999999999999999999999988888


Q ss_pred             hhhhcHHHHHHHHHhHhcCCCCCCCcceecc
Q 026172          207 LASISRENLKRLFMYIDKLPFITPNPTLVSY  237 (242)
Q Consensus       207 ~~~~~~e~l~rl~~~i~~lp~~~p~~~~~~~  237 (242)
                      +.++.++.-.+...|++..+...|..-...|
T Consensus       240 i~e~~~~~s~~~c~yf~~~~g~cPf~s~~~y  270 (344)
T KOG1039|consen  240 IEEYEAEMSAKDCKYFSQGLGSCPFGSKCFY  270 (344)
T ss_pred             HHHHHHHhhccchhhhcCCCCCCCCCCcccc
Confidence            8888777777889999999999998655544

>PHA02929 N1R/p28-like protein; Provisional

Probab=99.23  E-value=4.8e-12  Score=109.58  Aligned_cols=56  Identities=30%  Similarity=0.905  Sum_probs=47.7

Q ss_pred             CccCeeccccccccc--------ceecCCCCcchHHHHHHHhccCCCCcCcccccccccCCCcc
Q 026172          141 EREEECGICLEICCK--------IVLPDCNHSMCMRCYRNWRARSQSCPFCRDSLRRVNSGDLW  196 (242)
Q Consensus       141 ~~~~~C~ICl~~~~~--------~v~~~CgH~fC~~Ci~~w~~~~~~CP~CR~~l~~~~~~~~~  196 (242)
                      .++.+|+||++.+.+        +++++|+|.||..|+.+|+....+||+||.++..+.....|
T Consensus       172 ~~~~eC~ICle~~~~~~~~~~~~~vl~~C~H~FC~~CI~~Wl~~~~tCPlCR~~~~~v~~~r~~  235 (238)
T PHA02929        172 SKDKECAICMEKVYDKEIKNMYFGILSNCNHVFCIECIDIWKKEKNTCPVCRTPFISVIKSRFF  235 (238)
T ss_pred             CCCCCCccCCcccccCccccccceecCCCCCcccHHHHHHHHhcCCCCCCCCCEeeEEeeeeee
Confidence            456899999998764        35679999999999999999999999999999877666554

>PF13920 zf-C3HC4_3: Zinc finger, C3HC4 type (RING finger); PDB: 2YHN_B 2YHO_G 3T6P_A 2CSY_A 2VJE_B 2VJF_B 2HDP_B 2EA5_A 2ECG_A 3EB5_A

Probab=99.22  E-value=6.2e-12  Score=83.40  Aligned_cols=47  Identities=36%  Similarity=0.863  Sum_probs=42.4

Q ss_pred             cCeecccccccccceecCCCCc-chHHHHHHHhccCCCCcCccccccc
Q 026172          143 EEECGICLEICCKIVLPDCNHS-MCMRCYRNWRARSQSCPFCRDSLRR  189 (242)
Q Consensus       143 ~~~C~ICl~~~~~~v~~~CgH~-fC~~Ci~~w~~~~~~CP~CR~~l~~  189 (242)
                      +..|.||++...+++..+|||. ||..|+.+|......||+||+++..
T Consensus         2 ~~~C~iC~~~~~~~~~~pCgH~~~C~~C~~~~~~~~~~CP~Cr~~i~~   49 (50)
T PF13920_consen    2 DEECPICFENPRDVVLLPCGHLCFCEECAERLLKRKKKCPICRQPIES   49 (50)
T ss_dssp             HSB-TTTSSSBSSEEEETTCEEEEEHHHHHHHHHTTSBBTTTTBB-SE
T ss_pred             cCCCccCCccCCceEEeCCCChHHHHHHhHHhcccCCCCCcCChhhcC
Confidence            5789999999999999999999 9999999999999999999999874

...

>PF13639 zf-RING_2: Ring finger domain; PDB: 2KIZ_A 4EPO_C 1IYM_A 2EP4_A 2ECT_A 2JRJ_A 2ECN_A 2ECM_A 3NG2_A 2EA6_A

Probab=99.21  E-value=3.5e-12  Score=82.33  Aligned_cols=41  Identities=44%  Similarity=0.996  Sum_probs=35.3

Q ss_pred             Ceecccccccc---cceecCCCCcchHHHHHHHhccCCCCcCcc
Q 026172          144 EECGICLEICC---KIVLPDCNHSMCMRCYRNWRARSQSCPFCR  184 (242)
Q Consensus       144 ~~C~ICl~~~~---~~v~~~CgH~fC~~Ci~~w~~~~~~CP~CR  184 (242)
                      .+|+||++.+.   .++.++|||.||.+|+.+|+.++.+||+||
T Consensus         1 d~C~IC~~~~~~~~~~~~l~C~H~fh~~Ci~~~~~~~~~CP~CR   44 (44)
T PF13639_consen    1 DECPICLEEFEDGEKVVKLPCGHVFHRSCIKEWLKRNNSCPVCR   44 (44)
T ss_dssp             -CETTTTCBHHTTSCEEEETTSEEEEHHHHHHHHHHSSB-TTTH
T ss_pred             CCCcCCChhhcCCCeEEEccCCCeeCHHHHHHHHHhCCcCCccC
Confidence            37999999985   446788999999999999999999999997

...

>PLN03208 E3 ubiquitin-protein ligase RMA2; Provisional

Probab=99.20  E-value=1.3e-11  Score=103.05  Aligned_cols=53  Identities=26%  Similarity=0.774  Sum_probs=45.5

Q ss_pred             ccCCccCeecccccccccceecCCCCcchHHHHHHHhc----------------cCCCCcCcccccccc
Q 026172          138 IDIEREEECGICLEICCKIVLPDCNHSMCMRCYRNWRA----------------RSQSCPFCRDSLRRV  190 (242)
Q Consensus       138 ~~~~~~~~C~ICl~~~~~~v~~~CgH~fC~~Ci~~w~~----------------~~~~CP~CR~~l~~~  190 (242)
                      .+..++.+|+||++.+.++++++|||.||..|+.+|+.                ....||.||.++...
T Consensus        13 ~~~~~~~~CpICld~~~dPVvT~CGH~FC~~CI~~wl~~s~~s~~~~~~~~~~k~~~~CPvCR~~Is~~   81 (193)
T PLN03208         13 VDSGGDFDCNICLDQVRDPVVTLCGHLFCWPCIHKWTYASNNSRQRVDQYDHKREPPKCPVCKSDVSEA   81 (193)
T ss_pred             ccCCCccCCccCCCcCCCcEEcCCCchhHHHHHHHHHHhccccccccccccccCCCCcCCCCCCcCChh
Confidence            35557799999999999999999999999999999974                235899999998743

>PF15227 zf-C3HC4_4: zinc finger of C3HC4-type, RING; PDB: 2EGP_A 2ECV_A 2ECJ_A 2YSL_A 2YSJ_A

Probab=99.19  E-value=1.3e-11  Score=78.97  Aligned_cols=38  Identities=37%  Similarity=0.837  Sum_probs=30.3

Q ss_pred             ecccccccccceecCCCCcchHHHHHHHhcc----CCCCcCc
Q 026172          146 CGICLEICCKIVLPDCNHSMCMRCYRNWRAR----SQSCPFC  183 (242)
Q Consensus       146 C~ICl~~~~~~v~~~CgH~fC~~Ci~~w~~~----~~~CP~C  183 (242)
                      |+||++.+.+|+.++|||+||..|+.+|+..    ...||.|
T Consensus         1 CpiC~~~~~~Pv~l~CGH~FC~~Cl~~~~~~~~~~~~~CP~C   42 (42)
T PF15227_consen    1 CPICLDLFKDPVSLPCGHSFCRSCLERLWKEPSGSGFSCPEC   42 (42)
T ss_dssp             ETTTTSB-SSEEE-SSSSEEEHHHHHHHHCCSSSST---SSS
T ss_pred             CCccchhhCCccccCCcCHHHHHHHHHHHHccCCcCCCCcCC
Confidence            8999999999999999999999999998873    2579987

>PHA02926 zinc finger-like protein; Provisional

Probab=99.13  E-value=2.9e-11  Score=102.40  Aligned_cols=56  Identities=36%  Similarity=0.986  Sum_probs=46.0

Q ss_pred             CccCeeccccccccc---------ceecCCCCcchHHHHHHHhcc------CCCCcCcccccccccCCCcc
Q 026172          141 EREEECGICLEICCK---------IVLPDCNHSMCMRCYRNWRAR------SQSCPFCRDSLRRVNSGDLW  196 (242)
Q Consensus       141 ~~~~~C~ICl~~~~~---------~v~~~CgH~fC~~Ci~~w~~~------~~~CP~CR~~l~~~~~~~~~  196 (242)
                      .++.+|+||++...+         +++++|+|.||..||..|...      ..+||+||..+..+.++..+
T Consensus       168 SkE~eCgICmE~I~eK~~~~eRrFGIL~~CnHsFCl~CIr~Wr~~r~~~~~~rsCPiCR~~f~~I~pSrf~  238 (242)
T PHA02926        168 SKEKECGICYEVVYSKRLENDRYFGLLDSCNHIFCITCINIWHRTRRETGASDNCPICRTRFRNITMSKFY  238 (242)
T ss_pred             cCCCCCccCccccccccccccccccccCCCCchHHHHHHHHHHHhccccCcCCcCCCCcceeeeeccccce
Confidence            466899999998532         477899999999999999873      35699999999887776654

>PF13923 zf-C3HC4_2: Zinc finger, C3HC4 type (RING finger); PDB: 3HCU_A 2ECI_A 2JMD_A 3HCS_B 3HCT_A 3ZTG_A 2YUR_A 3L11_A

Probab=99.09  E-value=5.5e-11  Score=74.81  Aligned_cols=38  Identities=34%  Similarity=0.951  Sum_probs=34.1

Q ss_pred             ecccccccccc-eecCCCCcchHHHHHHHhccCCCCcCc
Q 026172          146 CGICLEICCKI-VLPDCNHSMCMRCYRNWRARSQSCPFC  183 (242)
Q Consensus       146 C~ICl~~~~~~-v~~~CgH~fC~~Ci~~w~~~~~~CP~C  183 (242)
                      |+||++.+.++ +.++|||.||..|+.+|++....||.|
T Consensus         1 C~iC~~~~~~~~~~~~CGH~fC~~C~~~~~~~~~~CP~C   39 (39)
T PF13923_consen    1 CPICLDELRDPVVVTPCGHSFCKECIEKYLEKNPKCPVC   39 (39)
T ss_dssp             ETTTTSB-SSEEEECTTSEEEEHHHHHHHHHCTSB-TTT
T ss_pred             CCCCCCcccCcCEECCCCCchhHHHHHHHHHCcCCCcCC
Confidence            89999999999 679999999999999999989999988

>KOG0823 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

Probab=99.06  E-value=6.8e-11  Score=100.67  Aligned_cols=48  Identities=29%  Similarity=0.800  Sum_probs=44.3

Q ss_pred             CccCeecccccccccceecCCCCcchHHHHHHHhc---cCCCCcCcccccc
Q 026172          141 EREEECGICLEICCKIVLPDCNHSMCMRCYRNWRA---RSQSCPFCRDSLR  188 (242)
Q Consensus       141 ~~~~~C~ICl~~~~~~v~~~CgH~fC~~Ci~~w~~---~~~~CP~CR~~l~  188 (242)
                      ....+|.||++.-.+||++.|||.||..|+.+|+.   .++.||+|++.++
T Consensus        45 ~~~FdCNICLd~akdPVvTlCGHLFCWpClyqWl~~~~~~~~cPVCK~~Vs   95 (230)
T KOG0823|consen   45 GGFFDCNICLDLAKDPVVTLCGHLFCWPCLYQWLQTRPNSKECPVCKAEVS   95 (230)
T ss_pred             CCceeeeeeccccCCCEEeecccceehHHHHHHHhhcCCCeeCCccccccc
Confidence            45689999999999999999999999999999997   6789999999876

>smart00504 Ubox Modified RING finger domain

Probab=99.02  E-value=2e-10  Score=79.25  Aligned_cols=47  Identities=21%  Similarity=0.304  Sum_probs=43.2

Q ss_pred             cCeecccccccccceecCCCCcchHHHHHHHhccCCCCcCccccccc
Q 026172          143 EEECGICLEICCKIVLPDCNHSMCMRCYRNWRARSQSCPFCRDSLRR  189 (242)
Q Consensus       143 ~~~C~ICl~~~~~~v~~~CgH~fC~~Ci~~w~~~~~~CP~CR~~l~~  189 (242)
                      +..|+||.+.+.+|+.++|||+||..|+.+|+....+||+|+.+++.
T Consensus         1 ~~~Cpi~~~~~~~Pv~~~~G~v~~~~~i~~~~~~~~~cP~~~~~~~~   47 (63)
T smart00504        1 EFLCPISLEVMKDPVILPSGQTYERRAIEKWLLSHGTDPVTGQPLTH   47 (63)
T ss_pred             CcCCcCCCCcCCCCEECCCCCEEeHHHHHHHHHHCCCCCCCcCCCCh
Confidence            35799999999999999999999999999999888999999988753

Modified RING finger domain, without the full complement of Zn2+-binding ligands. Probable involvement in E2-dependent ubiquitination.

>TIGR00599 rad18 DNA repair protein rad18

Probab=99.01  E-value=2.8e-10  Score=105.24  Aligned_cols=58  Identities=26%  Similarity=0.669  Sum_probs=49.7

Q ss_pred             cCCccCeecccccccccceecCCCCcchHHHHHHHhccCCCCcCcccccccccCCCcc
Q 026172          139 DIEREEECGICLEICCKIVLPDCNHSMCMRCYRNWRARSQSCPFCRDSLRRVNSGDLW  196 (242)
Q Consensus       139 ~~~~~~~C~ICl~~~~~~v~~~CgH~fC~~Ci~~w~~~~~~CP~CR~~l~~~~~~~~~  196 (242)
                      .++....|+||++.+..|++++|||.||..|+..|+.....||.||..+.......++
T Consensus        22 ~Le~~l~C~IC~d~~~~PvitpCgH~FCs~CI~~~l~~~~~CP~Cr~~~~~~~Lr~N~   79 (397)
T TIGR00599        22 PLDTSLRCHICKDFFDVPVLTSCSHTFCSLCIRRCLSNQPKCPLCRAEDQESKLRSNW   79 (397)
T ss_pred             ccccccCCCcCchhhhCccCCCCCCchhHHHHHHHHhCCCCCCCCCCccccccCccch
Confidence            4567789999999999999999999999999999999888999999998754444443

This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).

>KOG0317 consensus Predicted E3 ubiquitin ligase, integral peroxisomal membrane protein [Posttranslational modification, protein turnover, chaperones]

Probab=99.00  E-value=2.8e-10  Score=99.65  Aligned_cols=48  Identities=29%  Similarity=0.857  Sum_probs=44.7

Q ss_pred             CccCeecccccccccceecCCCCcchHHHHHHHhccCCCCcCcccccc
Q 026172          141 EREEECGICLEICCKIVLPDCNHSMCMRCYRNWRARSQSCPFCRDSLR  188 (242)
Q Consensus       141 ~~~~~C~ICl~~~~~~v~~~CgH~fC~~Ci~~w~~~~~~CP~CR~~l~  188 (242)
                      +....|.+|++....|..+||||.||..||..|......||+||..++
T Consensus       237 ~a~~kC~LCLe~~~~pSaTpCGHiFCWsCI~~w~~ek~eCPlCR~~~~  284 (293)
T KOG0317|consen  237 EATRKCSLCLENRSNPSATPCGHIFCWSCILEWCSEKAECPLCREKFQ  284 (293)
T ss_pred             CCCCceEEEecCCCCCCcCcCcchHHHHHHHHHHccccCCCcccccCC
Confidence            445799999999999999999999999999999999899999999886

>PF12678 zf-rbx1: RING-H2 zinc finger; InterPro: IPR024766 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule

Probab=98.97  E-value=3.5e-10  Score=80.97  Aligned_cols=42  Identities=33%  Similarity=0.923  Sum_probs=35.0

Q ss_pred             cCeeccccccccc-------------ceecCCCCcchHHHHHHHhccCCCCcCcc
Q 026172          143 EEECGICLEICCK-------------IVLPDCNHSMCMRCYRNWRARSQSCPFCR  184 (242)
Q Consensus       143 ~~~C~ICl~~~~~-------------~v~~~CgH~fC~~Ci~~w~~~~~~CP~CR  184 (242)
                      +..|+||++.+.+             .+..+|||.||..||.+|+..+.+||+||
T Consensus        19 ~d~C~IC~~~l~~~~~~~~~~~~~~~i~~~~C~H~FH~~Ci~~Wl~~~~~CP~CR   73 (73)
T PF12678_consen   19 DDNCAICREPLEDPCPECQAPQDECPIVWGPCGHIFHFHCISQWLKQNNTCPLCR   73 (73)
T ss_dssp             CSBETTTTSBTTSTTCCHHHCTTTS-EEEETTSEEEEHHHHHHHHTTSSB-TTSS
T ss_pred             CCcccccChhhhChhhhhcCCccccceEecccCCCEEHHHHHHHHhcCCcCCCCC
Confidence            4459999999842             24568999999999999999999999997

Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This domain constitutes a conserved region found in proteins that participate in diverse functions relevant to chromosome metabolism and cell cycle control [].The domain contains 8 cysteine/ histidine residues which are proposed to be the conserved residues involved in zinc binding.; PDB: 4A0C_D 4A0L_I 4A0K_B 2ECL_A 1LDK_C 3RTR_F 3DQV_Y 1U6G_B 1LDJ_B 2HYE_D ....

>COG5243 HRD1 HRD ubiquitin ligase complex, ER membrane component [Posttranslational modification, protein turnover, chaperones]

Probab=98.96  E-value=6.4e-10  Score=100.26  Aligned_cols=49  Identities=29%  Similarity=0.793  Sum_probs=42.4

Q ss_pred             CCccCeecccccccc-------------cceecCCCCcchHHHHHHHhccCCCCcCcccccc
Q 026172          140 IEREEECGICLEICC-------------KIVLPDCNHSMCMRCYRNWRARSQSCPFCRDSLR  188 (242)
Q Consensus       140 ~~~~~~C~ICl~~~~-------------~~v~~~CgH~fC~~Ci~~w~~~~~~CP~CR~~l~  188 (242)
                      ..++..|.||++.+.             .|..++|||.+|.+|++.|.+++++||+||.|+-
T Consensus       284 ~n~D~~C~ICmde~~h~~~~~~~~~~~~~pKrLpCGHilHl~CLknW~ERqQTCPICr~p~i  345 (491)
T COG5243         284 TNSDRTCTICMDEMFHPDHEPLPRGLDMTPKRLPCGHILHLHCLKNWLERQQTCPICRRPVI  345 (491)
T ss_pred             cCCCCeEEEecccccCCCCccCcccccCCcccccccceeeHHHHHHHHHhccCCCcccCccc
Confidence            357789999999843             2467899999999999999999999999999953

>KOG0287 consensus Postreplication repair protein RAD18 [Replication, recombination and repair]

Probab=98.93  E-value=3.7e-10  Score=100.65  Aligned_cols=86  Identities=24%  Similarity=0.580  Sum_probs=64.1

Q ss_pred             cCCccCeecccccccccceecCCCCcchHHHHHHHhccCCCCcCcccccccccCCCccccCCchhhhhhhhhcHHHHHHH
Q 026172          139 DIEREEECGICLEICCKIVLPDCNHSMCMRCYRNWRARSQSCPFCRDSLRRVNSGDLWIYTSEDDIVDLASISRENLKRL  218 (242)
Q Consensus       139 ~~~~~~~C~ICl~~~~~~v~~~CgH~fC~~Ci~~w~~~~~~CP~CR~~l~~~~~~~~~~~~~~~~~~d~~~~~~e~l~rl  218 (242)
                      .+..-++|.||.+.|..|+++||+|+||.-||+.++.....||.|+.++.....+.++++   ++++.-....+..   |
T Consensus        19 ~lD~lLRC~IC~eyf~ip~itpCsHtfCSlCIR~~L~~~p~CP~C~~~~~Es~Lr~n~il---~Eiv~S~~~~R~~---L   92 (442)
T KOG0287|consen   19 TLDDLLRCGICFEYFNIPMITPCSHTFCSLCIRKFLSYKPQCPTCCVTVTESDLRNNRIL---DEIVKSLNFARNH---L   92 (442)
T ss_pred             hhHHHHHHhHHHHHhcCceeccccchHHHHHHHHHhccCCCCCceecccchhhhhhhhHH---HHHHHHHHHHHHH---H
Confidence            344568999999999999999999999999999999999999999999886655555443   4666665554544   4


Q ss_pred             HHhHhcCCCCCC
Q 026172          219 FMYIDKLPFITP  230 (242)
Q Consensus       219 ~~~i~~lp~~~p  230 (242)
                      +.++.--|..+|
T Consensus        93 l~fl~~~~~p~P  104 (442)
T KOG0287|consen   93 LQFLLESPAPSP  104 (442)
T ss_pred             HHHHhcCCCCCc
Confidence            444443343344

>PF00097 zf-C3HC4: Zinc finger, C3HC4 type (RING finger); InterPro: IPR018957 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule

Probab=98.92  E-value=7.8e-10  Score=70.00  Aligned_cols=38  Identities=47%  Similarity=1.065  Sum_probs=35.6

Q ss_pred             ecccccccccce-ecCCCCcchHHHHHHHhc--cCCCCcCc
Q 026172          146 CGICLEICCKIV-LPDCNHSMCMRCYRNWRA--RSQSCPFC  183 (242)
Q Consensus       146 C~ICl~~~~~~v-~~~CgH~fC~~Ci~~w~~--~~~~CP~C  183 (242)
                      |+||++.+.+++ .++|||.||..|+.+|+.  ....||.|
T Consensus         1 C~iC~~~~~~~~~~~~C~H~fC~~C~~~~~~~~~~~~CP~C   41 (41)
T PF00097_consen    1 CPICLEPFEDPVILLPCGHSFCRDCLRKWLENSGSVKCPLC   41 (41)
T ss_dssp             ETTTSSBCSSEEEETTTSEEEEHHHHHHHHHHTSSSBTTTT
T ss_pred             CCcCCccccCCCEEecCCCcchHHHHHHHHHhcCCccCCcC
Confidence            899999999998 899999999999999988  78899988

Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. The C3HC4 type zinc-finger (RING finger) is a cysteine-rich domain of 40 to 60 residues that coordinates two zinc ions, and has the consensus sequence: C-X2-C-X(9-39)-C-X(1-3)-H-X(2-3)-C-X2-C-X(4-48)-C-X2-C where X is any amino acid []. Many proteins containing a RING finger play a key role in the ubiquitination pathway []. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; PDB: 1CHC_A 2ECW_A 2Y43_B 1V87_A 2DJB_A 2H0D_B 3RPG_C 3KNV_A 2CKL_B 1JM7_A ....

>cd00162 RING RING-finger (Really Interesting New Gene) domain, a specialized type of Zn-finger of 40 to 60 residues that binds two atoms of zinc; defined by the 'cross-brace' motif C-X2-C-X(9-39)-C-X(1-3)- H-X(2-3)-(N/C/H)-X2-C-X(4-48)C-X2-C; probably involved in mediating protein-protein interactions; identified in a proteins with a wide range of functions such as viral replication, signal transduction, and development; has two variants, the C3HC4-type and a C3H2C3-type (RING-H2 finger), which have different cysteine/histidine pattern; a subset of RINGs are associated with B-Boxes (C-X2-H-X7-C-X7-C-X2-C-H-X2-H)

Probab=98.86  E-value=1.7e-09  Score=68.51  Aligned_cols=43  Identities=40%  Similarity=0.987  Sum_probs=36.5

Q ss_pred             eecccccccccce-ecCCCCcchHHHHHHHhcc-CCCCcCccccc
Q 026172          145 ECGICLEICCKIV-LPDCNHSMCMRCYRNWRAR-SQSCPFCRDSL  187 (242)
Q Consensus       145 ~C~ICl~~~~~~v-~~~CgH~fC~~Ci~~w~~~-~~~CP~CR~~l  187 (242)
                      +|+||++.+..++ .++|||.||..|+..|... ...||.||..+
T Consensus         1 ~C~iC~~~~~~~~~~~~C~H~~c~~C~~~~~~~~~~~Cp~C~~~~   45 (45)
T cd00162           1 ECPICLEEFREPVVLLPCGHVFCRSCIDKWLKSGKNTCPLCRTPI   45 (45)
T ss_pred             CCCcCchhhhCceEecCCCChhcHHHHHHHHHhCcCCCCCCCCcC
Confidence            5999999996554 4569999999999999986 88899998753

>KOG0320 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

Probab=98.83  E-value=1.7e-09  Score=88.75  Aligned_cols=48  Identities=27%  Similarity=0.749  Sum_probs=42.1

Q ss_pred             ccCeecccccccccc--eecCCCCcchHHHHHHHhccCCCCcCccccccc
Q 026172          142 REEECGICLEICCKI--VLPDCNHSMCMRCYRNWRARSQSCPFCRDSLRR  189 (242)
Q Consensus       142 ~~~~C~ICl~~~~~~--v~~~CgH~fC~~Ci~~w~~~~~~CP~CR~~l~~  189 (242)
                      ....|+|||+.+.+.  +-++|||.||..||+..+.....||+|+..++.
T Consensus       130 ~~~~CPiCl~~~sek~~vsTkCGHvFC~~Cik~alk~~~~CP~C~kkIt~  179 (187)
T KOG0320|consen  130 GTYKCPICLDSVSEKVPVSTKCGHVFCSQCIKDALKNTNKCPTCRKKITH  179 (187)
T ss_pred             cccCCCceecchhhccccccccchhHHHHHHHHHHHhCCCCCCcccccch
Confidence            447899999998854  558999999999999999999999999987663

>COG5432 RAD18 RING-finger-containing E3 ubiquitin ligase [Signal transduction mechanisms]

Probab=98.79  E-value=3.9e-09  Score=92.53  Aligned_cols=86  Identities=20%  Similarity=0.406  Sum_probs=65.7

Q ss_pred             CCccCeecccccccccceecCCCCcchHHHHHHHhccCCCCcCcccccccccCCCccccCCchhhhhhhhhcHHHHHHHH
Q 026172          140 IEREEECGICLEICCKIVLPDCNHSMCMRCYRNWRARSQSCPFCRDSLRRVNSGDLWIYTSEDDIVDLASISRENLKRLF  219 (242)
Q Consensus       140 ~~~~~~C~ICl~~~~~~v~~~CgH~fC~~Ci~~w~~~~~~CP~CR~~l~~~~~~~~~~~~~~~~~~d~~~~~~e~l~rl~  219 (242)
                      +..-+.|-||-+.+..|+.++|||.||.-||+..+....-||.||.+....-....   ....++.+-.+..+..++.++
T Consensus        22 LDs~lrC~IC~~~i~ip~~TtCgHtFCslCIR~hL~~qp~CP~Cr~~~~esrlr~~---s~~~ei~es~~~~r~~l~~~L   98 (391)
T COG5432          22 LDSMLRCRICDCRISIPCETTCGHTFCSLCIRRHLGTQPFCPVCREDPCESRLRGS---SGSREINESHARNRDLLRKVL   98 (391)
T ss_pred             chhHHHhhhhhheeecceecccccchhHHHHHHHhcCCCCCccccccHHhhhcccc---hhHHHHHHhhhhccHHHHHHH
Confidence            34457899999999999999999999999999999999999999998764433332   334566666666666666666


Q ss_pred             HhHhcCCCC
Q 026172          220 MYIDKLPFI  228 (242)
Q Consensus       220 ~~i~~lp~~  228 (242)
                      .....+|..
T Consensus        99 ~~~~~~p~p  107 (391)
T COG5432          99 ESLCRLPRP  107 (391)
T ss_pred             hcccCCCCc
Confidence            655656654

>PF14634 zf-RING_5: zinc-RING finger domain

Probab=98.77  E-value=5.4e-09  Score=67.44  Aligned_cols=41  Identities=34%  Similarity=0.985  Sum_probs=36.2

Q ss_pred             eecccccccc---cceecCCCCcchHHHHHHHhccCCCCcCccc
Q 026172          145 ECGICLEICC---KIVLPDCNHSMCMRCYRNWRARSQSCPFCRD  185 (242)
Q Consensus       145 ~C~ICl~~~~---~~v~~~CgH~fC~~Ci~~w~~~~~~CP~CR~  185 (242)
                      +|+||++.+.   .+.+++|||.||..|+..+......||+||+
T Consensus         1 ~C~~C~~~~~~~~~~~l~~CgH~~C~~C~~~~~~~~~~CP~C~k   44 (44)
T PF14634_consen    1 HCNICFEKYSEERRPRLTSCGHIFCEKCLKKLKGKSVKCPICRK   44 (44)
T ss_pred             CCcCcCccccCCCCeEEcccCCHHHHHHHHhhcCCCCCCcCCCC
Confidence            4999999993   4678999999999999999877899999984

>KOG4628 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

Probab=98.77  E-value=6.8e-09  Score=94.10  Aligned_cols=46  Identities=30%  Similarity=0.803  Sum_probs=39.6

Q ss_pred             Ceecccccccccc---eecCCCCcchHHHHHHHhccC-CCCcCccccccc
Q 026172          144 EECGICLEICCKI---VLPDCNHSMCMRCYRNWRARS-QSCPFCRDSLRR  189 (242)
Q Consensus       144 ~~C~ICl~~~~~~---v~~~CgH~fC~~Ci~~w~~~~-~~CP~CR~~l~~  189 (242)
                      ..|+||+|.+.+.   ..+||+|.||..||.+|+.+. ..||+|+..+..
T Consensus       230 ~~CaIClEdY~~GdklRiLPC~H~FH~~CIDpWL~~~r~~CPvCK~di~~  279 (348)
T KOG4628|consen  230 DTCAICLEDYEKGDKLRILPCSHKFHVNCIDPWLTQTRTFCPVCKRDIRT  279 (348)
T ss_pred             ceEEEeecccccCCeeeEecCCCchhhccchhhHhhcCccCCCCCCcCCC
Confidence            4999999999954   558999999999999999865 569999987753

>smart00184 RING Ring finger

Probab=98.73  E-value=9.4e-09  Score=62.82  Aligned_cols=38  Identities=39%  Similarity=1.037  Sum_probs=34.8

Q ss_pred             ecccccccccceecCCCCcchHHHHHHHhc-cCCCCcCc
Q 026172          146 CGICLEICCKIVLPDCNHSMCMRCYRNWRA-RSQSCPFC  183 (242)
Q Consensus       146 C~ICl~~~~~~v~~~CgH~fC~~Ci~~w~~-~~~~CP~C  183 (242)
                      |+||++....++.++|||.||..|+..|+. ....||.|
T Consensus         1 C~iC~~~~~~~~~~~C~H~~c~~C~~~~~~~~~~~CP~C   39 (39)
T smart00184        1 CPICLEELKDPVVLPCGHTFCRSCIRKWLKSGNNTCPIC   39 (39)
T ss_pred             CCcCccCCCCcEEecCCChHHHHHHHHHHHhCcCCCCCC
Confidence            789999988888899999999999999998 67789987

E3 ubiquitin-protein ligase activity is intrinsic to the RING domain of c-Cbl and is likely to be a general function of this domain; Various RING fingers exhibit binding activity towards E2 ubiquitin-conjugating enzymes (Ubc' s)

>PF12861 zf-Apc11: Anaphase-promoting complex subunit 11 RING-H2 finger

Probab=98.70  E-value=1.3e-08  Score=74.34  Aligned_cols=49  Identities=29%  Similarity=0.811  Sum_probs=40.0

Q ss_pred             CCccCeeccccccccc-------------ceecCCCCcchHHHHHHHhcc---CCCCcCcccccc
Q 026172          140 IEREEECGICLEICCK-------------IVLPDCNHSMCMRCYRNWRAR---SQSCPFCRDSLR  188 (242)
Q Consensus       140 ~~~~~~C~ICl~~~~~-------------~v~~~CgH~fC~~Ci~~w~~~---~~~CP~CR~~l~  188 (242)
                      ..++..|+||...|..             .+.-.|+|.||..||.+|++.   ...||+||++..
T Consensus        18 ~~~dd~CgICr~~fdg~Cp~Ck~Pgd~Cplv~g~C~H~FH~hCI~kWl~~~~~~~~CPmCR~~w~   82 (85)
T PF12861_consen   18 VANDDVCGICRMPFDGCCPDCKFPGDDCPLVWGKCSHNFHMHCILKWLSTQSSKGQCPMCRQPWK   82 (85)
T ss_pred             cCCCCceeeEecccccCCCCccCCCCCCceeeccCccHHHHHHHHHHHccccCCCCCCCcCCeee
Confidence            3457899999988771             244579999999999999983   579999999865

>PF04564 U-box: U-box domain; InterPro: IPR003613 Quality control of intracellular proteins is essential for cellular homeostasis

Probab=98.69  E-value=8.8e-09  Score=73.67  Aligned_cols=49  Identities=22%  Similarity=0.327  Sum_probs=40.6

Q ss_pred             ccCeecccccccccceecCCCCcchHHHHHHHhcc-CCCCcCcccccccc
Q 026172          142 REEECGICLEICCKIVLPDCNHSMCMRCYRNWRAR-SQSCPFCRDSLRRV  190 (242)
Q Consensus       142 ~~~~C~ICl~~~~~~v~~~CgH~fC~~Ci~~w~~~-~~~CP~CR~~l~~~  190 (242)
                      +++.|+|+.+.+.+|+.+++||+|+..||.+|+.. ..+||+|+.++...
T Consensus         3 ~~f~CpIt~~lM~dPVi~~~G~tyer~~I~~~l~~~~~~~P~t~~~l~~~   52 (73)
T PF04564_consen    3 DEFLCPITGELMRDPVILPSGHTYERSAIERWLEQNGGTDPFTRQPLSES   52 (73)
T ss_dssp             GGGB-TTTSSB-SSEEEETTSEEEEHHHHHHHHCTTSSB-TTT-SB-SGG
T ss_pred             cccCCcCcCcHhhCceeCCcCCEEcHHHHHHHHHcCCCCCCCCCCcCCcc
Confidence            56889999999999999999999999999999997 99999999988743

Molecular chaperones recognise and contribute to the refolding of misfolded or unfolded proteins, whereas the ubiquitin-proteasome system mediates the degradation of such abnormal proteins. Ubiquitin-protein ligases (E3s) determine the substrate specificity for ubiquitylation and have been classified into HECT and RING-finger families. More recently, however, U-box proteins, which contain a domain (the U box) of about 70 amino acids that is conserved from yeast to humans, have been identified as a new type of E3 []. Members of the U-box family of proteins constitute a class of ubiquitin-protein ligases (E3s) distinct from the HECT-type and RING finger-containing E3 families []. Using yeast two-hybrid technology, all mammalian U-box proteins have been reported to interact with molecular chaperones or co-chaperones, including Hsp90, Hsp70, DnaJc7, EKN1, CRN, and VCP. This suggests that the function of U box-type E3s is to mediate the degradation of unfolded or misfolded proteins in conjunction with molecular chaperones as receptors that recognise such abnormal proteins [, ]. Unlike the RING finger domain, IPR001841 from INTERPRO, that is stabilised by Zn2+ ions coordinated by the cysteines and a histidine, the U-box scaffold is probably stabilised by a system of salt-bridges and hydrogen bonds. The charged and polar residues that participate in this network of bonds are more strongly conserved in the U-box proteins than in classic RING fingers, which supports their role in maintaining the stability of the U box. Thus, the U box appears to have evolved from a RING finger domain by appropriation of a new set of residues required to stabilise its structure, concomitant with the loss of the original, metal-chelating residues [].; GO: 0004842 ubiquitin-protein ligase activity, 0016567 protein ubiquitination, 0000151 ubiquitin ligase complex; PDB: 1T1H_A 2C2L_D 2C2V_V 1WGM_A 2KR4_A 3L1Z_B 3L1X_A 2KRE_A 3M63_A 2QIZ_A ....

>KOG2164 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

Probab=98.68  E-value=9.3e-09  Score=96.29  Aligned_cols=47  Identities=32%  Similarity=0.732  Sum_probs=42.5

Q ss_pred             cCeecccccccccceecCCCCcchHHHHHHHhc-----cCCCCcCccccccc
Q 026172          143 EEECGICLEICCKIVLPDCNHSMCMRCYRNWRA-----RSQSCPFCRDSLRR  189 (242)
Q Consensus       143 ~~~C~ICl~~~~~~v~~~CgH~fC~~Ci~~w~~-----~~~~CP~CR~~l~~  189 (242)
                      +..||||++....++.+.|||.||..||.+++.     +-..||+||..+..
T Consensus       186 ~~~CPICL~~~~~p~~t~CGHiFC~~CiLqy~~~s~~~~~~~CPiC~s~I~~  237 (513)
T KOG2164|consen  186 DMQCPICLEPPSVPVRTNCGHIFCGPCILQYWNYSAIKGPCSCPICRSTITL  237 (513)
T ss_pred             CCcCCcccCCCCcccccccCceeeHHHHHHHHhhhcccCCccCCchhhhccc
Confidence            789999999999999999999999999999776     45799999998874

>COG5540 RING-finger-containing ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

Probab=98.60  E-value=2.1e-08  Score=88.50  Aligned_cols=47  Identities=30%  Similarity=0.768  Sum_probs=41.2

Q ss_pred             ccCeecccccccccc---eecCCCCcchHHHHHHHhc-cCCCCcCcccccc
Q 026172          142 REEECGICLEICCKI---VLPDCNHSMCMRCYRNWRA-RSQSCPFCRDSLR  188 (242)
Q Consensus       142 ~~~~C~ICl~~~~~~---v~~~CgH~fC~~Ci~~w~~-~~~~CP~CR~~l~  188 (242)
                      ...+|+|||+.+.+.   +.+||.|.||..|+.+|+. -+..||+||.+++
T Consensus       322 ~GveCaICms~fiK~d~~~vlPC~H~FH~~Cv~kW~~~y~~~CPvCrt~iP  372 (374)
T COG5540         322 KGVECAICMSNFIKNDRLRVLPCDHRFHVGCVDKWLLGYSNKCPVCRTAIP  372 (374)
T ss_pred             CCceEEEEhhhhcccceEEEeccCceechhHHHHHHhhhcccCCccCCCCC
Confidence            347999999998743   5689999999999999998 6899999999876

>PF13445 zf-RING_UBOX: RING-type zinc-finger; PDB: 2CT2_A

Probab=98.60  E-value=2e-08  Score=64.53  Aligned_cols=35  Identities=29%  Similarity=0.800  Sum_probs=21.8

Q ss_pred             eccccccccc----ceecCCCCcchHHHHHHHhcc----CCCCc
Q 026172          146 CGICLEICCK----IVLPDCNHSMCMRCYRNWRAR----SQSCP  181 (242)
Q Consensus       146 C~ICl~~~~~----~v~~~CgH~fC~~Ci~~w~~~----~~~CP  181 (242)
                      |+||.+ +..    |+.++|||+||.+|+.++..+    ...||
T Consensus         1 CpIc~e-~~~~~n~P~~L~CGH~~c~~cl~~l~~~~~~~~~kCP   43 (43)
T PF13445_consen    1 CPICKE-FSTEENPPMVLPCGHVFCKDCLQKLSKKSDRNRFKCP   43 (43)
T ss_dssp             -TTT-----TTSS-EEE-SSS-EEEHHHHHHHHHH-S-S-B--T
T ss_pred             CCcccc-ccCCCCCCEEEeCccHHHHHHHHHHHhcCCCCeeeCc
Confidence            899999 776    888889999999999999873    45666

>COG5574 PEX10 RING-finger-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

Probab=98.57  E-value=2.6e-08  Score=86.41  Aligned_cols=48  Identities=27%  Similarity=0.693  Sum_probs=42.8

Q ss_pred             CccCeecccccccccceecCCCCcchHHHHHH-HhccCCC-CcCcccccc
Q 026172          141 EREEECGICLEICCKIVLPDCNHSMCMRCYRN-WRARSQS-CPFCRDSLR  188 (242)
Q Consensus       141 ~~~~~C~ICl~~~~~~v~~~CgH~fC~~Ci~~-w~~~~~~-CP~CR~~l~  188 (242)
                      ..+..|.||++....+..++|||.||..|+.. |-.+... ||+||+...
T Consensus       213 ~~d~kC~lC~e~~~~ps~t~CgHlFC~~Cl~~~~t~~k~~~CplCRak~~  262 (271)
T COG5574         213 LADYKCFLCLEEPEVPSCTPCGHLFCLSCLLISWTKKKYEFCPLCRAKVY  262 (271)
T ss_pred             ccccceeeeecccCCcccccccchhhHHHHHHHHHhhccccCchhhhhcc
Confidence            56789999999999999999999999999999 8776555 999999765

>KOG0802 consensus E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

Probab=98.46  E-value=5.8e-08  Score=93.98  Aligned_cols=47  Identities=38%  Similarity=0.725  Sum_probs=42.6

Q ss_pred             CccCeeccccccccc-----ceecCCCCcchHHHHHHHhccCCCCcCccccc
Q 026172          141 EREEECGICLEICCK-----IVLPDCNHSMCMRCYRNWRARSQSCPFCRDSL  187 (242)
Q Consensus       141 ~~~~~C~ICl~~~~~-----~v~~~CgH~fC~~Ci~~w~~~~~~CP~CR~~l  187 (242)
                      ..+..|.||++.+..     +..++|||.||..|++.|+++..+||+||..+
T Consensus       289 ~~~~~C~IC~e~l~~~~~~~~~rL~C~Hifh~~CL~~W~er~qtCP~CR~~~  340 (543)
T KOG0802|consen  289 LSDELCIICLEELHSGHNITPKRLPCGHIFHDSCLRSWFERQQTCPTCRTVL  340 (543)
T ss_pred             hcCCeeeeechhhccccccccceeecccchHHHHHHHHHHHhCcCCcchhhh
Confidence            457899999999987     67889999999999999999999999999943

>KOG2177 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

Probab=98.43  E-value=8.4e-08  Score=83.26  Aligned_cols=47  Identities=36%  Similarity=0.752  Sum_probs=42.5

Q ss_pred             cCCccCeecccccccccceecCCCCcchHHHHHHHhccCCCCcCccc
Q 026172          139 DIEREEECGICLEICCKIVLPDCNHSMCMRCYRNWRARSQSCPFCRD  185 (242)
Q Consensus       139 ~~~~~~~C~ICl~~~~~~v~~~CgH~fC~~Ci~~w~~~~~~CP~CR~  185 (242)
                      ...++..|+||++.+..+.+++|||+||..|+..++.....||.||.
T Consensus         9 ~~~~~~~C~iC~~~~~~p~~l~C~H~~c~~C~~~~~~~~~~Cp~cr~   55 (386)
T KOG2177|consen    9 VLQEELTCPICLEYFREPVLLPCGHNFCRACLTRSWEGPLSCPVCRP   55 (386)
T ss_pred             hccccccChhhHHHhhcCccccccchHhHHHHHHhcCCCcCCcccCC
Confidence            34578999999999999998999999999999998777789999994

>KOG4172 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

Probab=98.43  E-value=5.6e-08  Score=64.66  Aligned_cols=47  Identities=38%  Similarity=0.808  Sum_probs=41.1

Q ss_pred             CeecccccccccceecCCCCc-chHHHHHH-HhccCCCCcCcccccccc
Q 026172          144 EECGICLEICCKIVLPDCNHS-MCMRCYRN-WRARSQSCPFCRDSLRRV  190 (242)
Q Consensus       144 ~~C~ICl~~~~~~v~~~CgH~-fC~~Ci~~-w~~~~~~CP~CR~~l~~~  190 (242)
                      .+|.||+|...+.++..|||. +|..|-.+ |...+..||+||++++.+
T Consensus         8 dECTICye~pvdsVlYtCGHMCmCy~Cg~rl~~~~~g~CPiCRapi~dv   56 (62)
T KOG4172|consen    8 DECTICYEHPVDSVLYTCGHMCMCYACGLRLKKALHGCCPICRAPIKDV   56 (62)
T ss_pred             cceeeeccCcchHHHHHcchHHhHHHHHHHHHHccCCcCcchhhHHHHH
Confidence            789999999999999899997 89999866 555889999999998743

>TIGR00570 cdk7 CDK-activating kinase assembly factor MAT1

Probab=98.26  E-value=1.5e-06  Score=77.92  Aligned_cols=51  Identities=27%  Similarity=0.559  Sum_probs=38.0

Q ss_pred             cCeecccccc--cccc---eecCCCCcchHHHHHHHh-ccCCCCcCcccccccccCC
Q 026172          143 EEECGICLEI--CCKI---VLPDCNHSMCMRCYRNWR-ARSQSCPFCRDSLRRVNSG  193 (242)
Q Consensus       143 ~~~C~ICl~~--~~~~---v~~~CgH~fC~~Ci~~w~-~~~~~CP~CR~~l~~~~~~  193 (242)
                      +..||+|...  +..-   ...+|||.||..|+...+ .....||.|+.++...+..
T Consensus         3 ~~~CP~Ck~~~y~np~~kl~i~~CGH~~C~sCv~~l~~~~~~~CP~C~~~lrk~~fr   59 (309)
T TIGR00570         3 DQGCPRCKTTKYRNPSLKLMVNVCGHTLCESCVDLLFVRGSGSCPECDTPLRKNNFR   59 (309)
T ss_pred             CCCCCcCCCCCccCcccccccCCCCCcccHHHHHHHhcCCCCCCCCCCCccchhhcc
Confidence            4679999994  2221   122799999999999954 5677999999998765443

All proteins in this family for which functions are known are cyclin dependent protein kinases that are components of TFIIH, a complex that is involved in nucleotide excision repair and transcription initiation. Also known as MAT1 (menage a trois 1). This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).

>PF14835 zf-RING_6: zf-RING of BARD1-type protein; PDB: 1JM7_B

Probab=98.22  E-value=1.4e-07  Score=65.17  Aligned_cols=50  Identities=30%  Similarity=0.692  Sum_probs=26.9

Q ss_pred             CccCeecccccccccce-ecCCCCcchHHHHHHHhccCCCCcCcccccccccC
Q 026172          141 EREEECGICLEICCKIV-LPDCNHSMCMRCYRNWRARSQSCPFCRDSLRRVNS  192 (242)
Q Consensus       141 ~~~~~C~ICl~~~~~~v-~~~CgH~fC~~Ci~~w~~~~~~CP~CR~~l~~~~~  192 (242)
                      ++-..|++|.+.+.+|+ +..|.|.||..|+.+-+.  ..||+|+.|....+.
T Consensus         5 e~lLrCs~C~~~l~~pv~l~~CeH~fCs~Ci~~~~~--~~CPvC~~Paw~qD~   55 (65)
T PF14835_consen    5 EELLRCSICFDILKEPVCLGGCEHIFCSSCIRDCIG--SECPVCHTPAWIQDI   55 (65)
T ss_dssp             HHTTS-SSS-S--SS-B---SSS--B-TTTGGGGTT--TB-SSS--B-S-SS-
T ss_pred             HHhcCCcHHHHHhcCCceeccCccHHHHHHhHHhcC--CCCCCcCChHHHHHH
Confidence            45578999999999997 579999999999977544  459999888654333

>KOG0978 consensus E3 ubiquitin ligase involved in syntaxin degradation [Posttranslational modification, protein turnover, chaperones]

Probab=98.13  E-value=8.4e-07  Score=86.81  Aligned_cols=47  Identities=23%  Similarity=0.653  Sum_probs=42.9

Q ss_pred             cCeecccccccccceecCCCCcchHHHHHHHhc-cCCCCcCccccccc
Q 026172          143 EEECGICLEICCKIVLPDCNHSMCMRCYRNWRA-RSQSCPFCRDSLRR  189 (242)
Q Consensus       143 ~~~C~ICl~~~~~~v~~~CgH~fC~~Ci~~w~~-~~~~CP~CR~~l~~  189 (242)
                      -..|++|.....+.+.+.|||.||..|+..... +...||.|..++..
T Consensus       643 ~LkCs~Cn~R~Kd~vI~kC~H~FC~~Cvq~r~etRqRKCP~Cn~aFga  690 (698)
T KOG0978|consen  643 LLKCSVCNTRWKDAVITKCGHVFCEECVQTRYETRQRKCPKCNAAFGA  690 (698)
T ss_pred             ceeCCCccCchhhHHHHhcchHHHHHHHHHHHHHhcCCCCCCCCCCCc
Confidence            479999999999999999999999999998766 89999999998873

>KOG4265 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

Probab=98.09  E-value=1.8e-06  Score=77.97  Aligned_cols=49  Identities=33%  Similarity=0.821  Sum_probs=44.1

Q ss_pred             CccCeecccccccccceecCCCCc-chHHHHHHHhccCCCCcCccccccc
Q 026172          141 EREEECGICLEICCKIVLPDCNHS-MCMRCYRNWRARSQSCPFCRDSLRR  189 (242)
Q Consensus       141 ~~~~~C~ICl~~~~~~v~~~CgH~-fC~~Ci~~w~~~~~~CP~CR~~l~~  189 (242)
                      +...+|.||+....+.+++||.|. .|..|.+...-+...||+||+++..
T Consensus       288 ~~gkeCVIClse~rdt~vLPCRHLCLCs~Ca~~Lr~q~n~CPICRqpi~~  337 (349)
T KOG4265|consen  288 ESGKECVICLSESRDTVVLPCRHLCLCSGCAKSLRYQTNNCPICRQPIEE  337 (349)
T ss_pred             cCCCeeEEEecCCcceEEecchhhehhHhHHHHHHHhhcCCCccccchHh
Confidence            345799999999999999999997 8999999987788999999999874

>KOG4159 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

Probab=98.04  E-value=2.4e-06  Score=79.36  Aligned_cols=51  Identities=33%  Similarity=0.783  Sum_probs=46.9

Q ss_pred             cCCccCeecccccccccceecCCCCcchHHHHHHHhccCCCCcCccccccc
Q 026172          139 DIEREEECGICLEICCKIVLPDCNHSMCMRCYRNWRARSQSCPFCRDSLRR  189 (242)
Q Consensus       139 ~~~~~~~C~ICl~~~~~~v~~~CgH~fC~~Ci~~w~~~~~~CP~CR~~l~~  189 (242)
                      ....+.+|.||+..+..|+.++|||+||..|+.+-+.....||.||.++..
T Consensus        80 ~~~sef~c~vc~~~l~~pv~tpcghs~c~~Cl~r~ld~~~~cp~Cr~~l~e  130 (398)
T KOG4159|consen   80 EIRSEFECCVCSRALYPPVVTPCGHSFCLECLDRSLDQETECPLCRDELVE  130 (398)
T ss_pred             cccchhhhhhhHhhcCCCccccccccccHHHHHHHhccCCCCccccccccc
Confidence            346789999999999999999999999999999988899999999999875

>KOG1002 consensus Nucleotide excision repair protein RAD16 [Replication, recombination and repair]

Probab=98.02  E-value=3.1e-06  Score=79.78  Aligned_cols=101  Identities=22%  Similarity=0.483  Sum_probs=70.8

Q ss_pred             ccCCCcccchhhhhchHHHHHhhhhhhHHHhhhcCCChHHHHHHHHhHHHHhhhcccccCCCccccCCccCeeccccccc
Q 026172           74 YADGKTTMCTRERKASIKEFYGVIFPSLLQLQRGITDVEDKKQKEICDAKYKKKGRMDKGKLSEIDIEREEECGICLEIC  153 (242)
Q Consensus        74 ~~dg~~~~~~~~rk~sl~efy~~i~~sl~ql~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~C~ICl~~~  153 (242)
                      |.|...+.+++-...++-..|+.||..+.++......        ...-.|+++..     + ..+...+.+|.+|.+.-
T Consensus       481 Y~dSkrkfntyieeGvvlNNYAnIF~LitRmRQ~aDH--------P~LVl~S~~~n-----~-~~enk~~~~C~lc~d~a  546 (791)
T KOG1002|consen  481 YKDSKRKFNTYIEEGVVLNNYANIFTLITRMRQAADH--------PDLVLYSANAN-----L-PDENKGEVECGLCHDPA  546 (791)
T ss_pred             HHhhHHhhhhHHhhhhhhhhHHHHHHHHHHHHHhccC--------cceeeehhhcC-----C-CccccCceeecccCChh
Confidence            5566777777777777777788888887666532221        11122222211     1 11334678999999999


Q ss_pred             ccceecCCCCcchHHHHHHHhc-----cCCCCcCcccccc
Q 026172          154 CKIVLPDCNHSMCMRCYRNWRA-----RSQSCPFCRDSLR  188 (242)
Q Consensus       154 ~~~v~~~CgH~fC~~Ci~~w~~-----~~~~CP~CR~~l~  188 (242)
                      .+++..+|.|.||..|+..+..     .+.+||.|-..++
T Consensus       547 ed~i~s~ChH~FCrlCi~eyv~~f~~~~nvtCP~C~i~Ls  586 (791)
T KOG1002|consen  547 EDYIESSCHHKFCRLCIKEYVESFMENNNVTCPVCHIGLS  586 (791)
T ss_pred             hhhHhhhhhHHHHHHHHHHHHHhhhcccCCCCcccccccc
Confidence            9999999999999999988875     4689999977765

>KOG0824 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

Probab=97.96  E-value=3.3e-06  Score=74.75  Aligned_cols=48  Identities=25%  Similarity=0.557  Sum_probs=41.6

Q ss_pred             ccCeecccccccccceecCCCCcchHHHHHHHhc-cCCCCcCccccccc
Q 026172          142 REEECGICLEICCKIVLPDCNHSMCMRCYRNWRA-RSQSCPFCRDSLRR  189 (242)
Q Consensus       142 ~~~~C~ICl~~~~~~v~~~CgH~fC~~Ci~~w~~-~~~~CP~CR~~l~~  189 (242)
                      ...+|+||+....-|+.+.|+|.||.-||+.-.. ...+|++||.++..
T Consensus         6 ~~~eC~IC~nt~n~Pv~l~C~HkFCyiCiKGsy~ndk~~CavCR~pids   54 (324)
T KOG0824|consen    6 KKKECLICYNTGNCPVNLYCFHKFCYICIKGSYKNDKKTCAVCRFPIDS   54 (324)
T ss_pred             cCCcceeeeccCCcCccccccchhhhhhhcchhhcCCCCCceecCCCCc
Confidence            3468999999999999999999999999988544 56779999999873

>KOG0828 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

Probab=97.95  E-value=3.7e-06  Score=78.67  Aligned_cols=48  Identities=29%  Similarity=0.695  Sum_probs=39.9

Q ss_pred             CccCeeccccccccc-----------------ceecCCCCcchHHHHHHHhc-cCCCCcCcccccc
Q 026172          141 EREEECGICLEICCK-----------------IVLPDCNHSMCMRCYRNWRA-RSQSCPFCRDSLR  188 (242)
Q Consensus       141 ~~~~~C~ICl~~~~~-----------------~v~~~CgH~fC~~Ci~~w~~-~~~~CP~CR~~l~  188 (242)
                      ++...|+|||..+.-                 -+++||.|.||..|+.+|.. .+-.||.||.+++
T Consensus       569 ~~t~dC~ICMt~I~l~~~~s~~~~~~~~~~~nYm~tPC~HifH~~CL~~WMd~ykl~CPvCR~pLP  634 (636)
T KOG0828|consen  569 RRTNDCVICMTPIDLRSTGSDCMVASMMVRRNYMLTPCHHIFHRQCLLQWMDTYKLICPVCRCPLP  634 (636)
T ss_pred             hccccceEeccccceeeccCcchhhhhhhhccccccchHHHHHHHHHHHHHhhhcccCCccCCCCC
Confidence            456899999987651                 24569999999999999999 5669999999986

>KOG1785 consensus Tyrosine kinase negative regulator CBL [Defense mechanisms]

Probab=97.87  E-value=5.7e-06  Score=75.71  Aligned_cols=46  Identities=35%  Similarity=0.926  Sum_probs=41.5

Q ss_pred             CeecccccccccceecCCCCcchHHHHHHHhc--cCCCCcCccccccc
Q 026172          144 EECGICLEICCKIVLPDCNHSMCMRCYRNWRA--RSQSCPFCRDSLRR  189 (242)
Q Consensus       144 ~~C~ICl~~~~~~v~~~CgH~fC~~Ci~~w~~--~~~~CP~CR~~l~~  189 (242)
                      .-|.||-+.-.+...-+|||..|..|+..|..  .+++||+||..++-
T Consensus       370 eLCKICaendKdvkIEPCGHLlCt~CLa~WQ~sd~gq~CPFCRcEIKG  417 (563)
T KOG1785|consen  370 ELCKICAENDKDVKIEPCGHLLCTSCLAAWQDSDEGQTCPFCRCEIKG  417 (563)
T ss_pred             HHHHHhhccCCCcccccccchHHHHHHHhhcccCCCCCCCceeeEecc
Confidence            57999999999988888999999999999985  48999999998873

>KOG0311 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

Probab=97.83  E-value=3.9e-06  Score=75.66  Aligned_cols=49  Identities=29%  Similarity=0.682  Sum_probs=41.1

Q ss_pred             CCccCeecccccccccce-ecCCCCcchHHHHHHHhc-cCCCCcCcccccc
Q 026172          140 IEREEECGICLEICCKIV-LPDCNHSMCMRCYRNWRA-RSQSCPFCRDSLR  188 (242)
Q Consensus       140 ~~~~~~C~ICl~~~~~~v-~~~CgH~fC~~Ci~~w~~-~~~~CP~CR~~l~  188 (242)
                      +..+..|+||++++...+ ...|+|.||..||..-+. ..+.||.||..+.
T Consensus        40 ~~~~v~c~icl~llk~tmttkeClhrfc~~ci~~a~r~gn~ecptcRk~l~   90 (381)
T KOG0311|consen   40 FDIQVICPICLSLLKKTMTTKECLHRFCFDCIWKALRSGNNECPTCRKKLV   90 (381)
T ss_pred             hhhhhccHHHHHHHHhhcccHHHHHHHHHHHHHHHHHhcCCCCchHHhhcc
Confidence            346689999999999654 568999999999977554 7899999999875

>COG5219 Uncharacterized conserved protein, contains RING Zn-finger [General function prediction only]

Probab=97.82  E-value=8e-06  Score=81.43  Aligned_cols=50  Identities=28%  Similarity=0.747  Sum_probs=41.6

Q ss_pred             cCCccCeecccccccc-------cceecCCCCcchHHHHHHHhc--cCCCCcCcccccc
Q 026172          139 DIEREEECGICLEICC-------KIVLPDCNHSMCMRCYRNWRA--RSQSCPFCRDSLR  188 (242)
Q Consensus       139 ~~~~~~~C~ICl~~~~-------~~v~~~CgH~fC~~Ci~~w~~--~~~~CP~CR~~l~  188 (242)
                      ..+...+|+||...+.       ...++.|.|.||..|+-+|+.  .+.+||+||..++
T Consensus      1465 ~fsG~eECaICYsvL~~vdr~lPskrC~TCknKFH~~CLyKWf~Ss~~s~CPlCRseit 1523 (1525)
T COG5219        1465 KFSGHEECAICYSVLDMVDRSLPSKRCATCKNKFHTRCLYKWFASSARSNCPLCRSEIT 1523 (1525)
T ss_pred             hcCCcchhhHHHHHHHHHhccCCccccchhhhhhhHHHHHHHHHhcCCCCCCccccccc
Confidence            4567789999998765       224567999999999999987  6789999998876

>COG5194 APC11 Component of SCF ubiquitin ligase and anaphase-promoting complex [Posttranslational modification, protein turnover, chaperones / Cell division and chromosome partitioning]

Probab=97.72  E-value=1.8e-05  Score=56.78  Aligned_cols=30  Identities=27%  Similarity=0.634  Sum_probs=27.4

Q ss_pred             cCCCCcchHHHHHHHhccCCCCcCcccccc
Q 026172          159 PDCNHSMCMRCYRNWRARSQSCPFCRDSLR  188 (242)
Q Consensus       159 ~~CgH~fC~~Ci~~w~~~~~~CP~CR~~l~  188 (242)
                      --|.|.||..||.+|+.....||++|++..
T Consensus        52 G~CnHaFH~HCI~rWL~Tk~~CPld~q~w~   81 (88)
T COG5194          52 GVCNHAFHDHCIYRWLDTKGVCPLDRQTWV   81 (88)
T ss_pred             EecchHHHHHHHHHHHhhCCCCCCCCceeE
Confidence            359999999999999999999999998764

>KOG2660 consensus Locus-specific chromosome binding proteins [Function unknown]

Probab=97.71  E-value=2.8e-05  Score=69.75  Aligned_cols=92  Identities=18%  Similarity=0.378  Sum_probs=63.9

Q ss_pred             cCCccCeeccccccccccee-cCCCCcchHHHHHHHhccCCCCcCcccccccccCCCcccc-CCchhhhhh--hhhcHHH
Q 026172          139 DIEREEECGICLEICCKIVL-PDCNHSMCMRCYRNWRARSQSCPFCRDSLRRVNSGDLWIY-TSEDDIVDL--ASISREN  214 (242)
Q Consensus       139 ~~~~~~~C~ICl~~~~~~v~-~~CgH~fC~~Ci~~w~~~~~~CP~CR~~l~~~~~~~~~~~-~~~~~~~d~--~~~~~e~  214 (242)
                      ++.....|.+|-..+.++.+ +-|-|+||.+||...+.....||.|...+....+..+.-. ...++++-.  .-....+
T Consensus        11 ~~n~~itC~LC~GYliDATTI~eCLHTFCkSCivk~l~~~~~CP~C~i~ih~t~pl~ni~~DrtlqdiVyKLVPgl~erE   90 (331)
T KOG2660|consen   11 ELNPHITCRLCGGYLIDATTITECLHTFCKSCIVKYLEESKYCPTCDIVIHKTHPLLNIRSDRTLQDIVYKLVPGLQERE   90 (331)
T ss_pred             hcccceehhhccceeecchhHHHHHHHHHHHHHHHHHHHhccCCccceeccCccccccCCcchHHHHHHHHHcchHHHHH
Confidence            44567899999999998854 6899999999999999999999999998876544333211 112222211  1134567


Q ss_pred             HHHHHHhHhcCC-CCCC
Q 026172          215 LKRLFMYIDKLP-FITP  230 (242)
Q Consensus       215 l~rl~~~i~~lp-~~~p  230 (242)
                      +++.-+|...-| .++|
T Consensus        91 ~k~~rdFy~~~~~~d~~  107 (331)
T KOG2660|consen   91 MKRRRDFYKSRPLVDVP  107 (331)
T ss_pred             HHHHHHHHHhCCCcccC
Confidence            777777777776 4443

>PF11793 FANCL_C: FANCL C-terminal domain; PDB: 3K1L_A

Probab=97.66  E-value=8.9e-06  Score=57.68  Aligned_cols=46  Identities=30%  Similarity=0.855  Sum_probs=23.7

Q ss_pred             cCeecccccccc-c-----cee--cCCCCcchHHHHHHHhcc-----------CCCCcCcccccc
Q 026172          143 EEECGICLEICC-K-----IVL--PDCNHSMCMRCYRNWRAR-----------SQSCPFCRDSLR  188 (242)
Q Consensus       143 ~~~C~ICl~~~~-~-----~v~--~~CgH~fC~~Ci~~w~~~-----------~~~CP~CR~~l~  188 (242)
                      +.+|+||+.... .     .+.  ..|++.||..|+.+|+..           ...||.|+.+++
T Consensus         2 ~~~C~IC~~~~~~~~~~p~~~C~n~~C~~~fH~~CL~~wf~~~~~~~~~~~~~~G~CP~C~~~i~   66 (70)
T PF11793_consen    2 ELECGICYSYRLDDGEIPDVVCPNPSCGKKFHLLCLSEWFLSLEKSRQSFIPIFGECPYCSSPIS   66 (70)
T ss_dssp             --S-SSS--SS-TT-----B--S-TT----B-SGGGHHHHHHHHSSS-TTT--EEE-TTT-SEEE
T ss_pred             CCCCCcCCcEecCCCCcCceEcCCcccCCHHHHHHHHHHHHHcccCCeeecccccCCcCCCCeee
Confidence            468999998754 2     122  389999999999999861           136999999886

>KOG1734 consensus Predicted RING-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

Probab=97.63  E-value=1.7e-05  Score=69.33  Aligned_cols=48  Identities=25%  Similarity=0.699  Sum_probs=39.3

Q ss_pred             CccCeeccccccccc----------ceecCCCCcchHHHHHHHhc--cCCCCcCcccccc
Q 026172          141 EREEECGICLEICCK----------IVLPDCNHSMCMRCYRNWRA--RSQSCPFCRDSLR  188 (242)
Q Consensus       141 ~~~~~C~ICl~~~~~----------~v~~~CgH~fC~~Ci~~w~~--~~~~CP~CR~~l~  188 (242)
                      .++..|+||-..+..          ...++|+|+||..||+.|..  +.++||.|+..+.
T Consensus       222 l~d~vCaVCg~~~~~s~~eegvienty~LsCnHvFHEfCIrGWcivGKkqtCPYCKekVd  281 (328)
T KOG1734|consen  222 LSDSVCAVCGQQIDVSVDEEGVIENTYKLSCNHVFHEFCIRGWCIVGKKQTCPYCKEKVD  281 (328)
T ss_pred             CCcchhHhhcchheeecchhhhhhhheeeecccchHHHhhhhheeecCCCCCchHHHHhh
Confidence            356789999876652          34689999999999999976  7899999988664

>KOG1493 consensus Anaphase-promoting complex (APC), subunit 11 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]

Probab=97.62  E-value=1.3e-05  Score=57.07  Aligned_cols=47  Identities=30%  Similarity=0.702  Sum_probs=36.8

Q ss_pred             ccCeeccccccccc------------c-eecCCCCcchHHHHHHHhc---cCCCCcCcccccc
Q 026172          142 REEECGICLEICCK------------I-VLPDCNHSMCMRCYRNWRA---RSQSCPFCRDSLR  188 (242)
Q Consensus       142 ~~~~C~ICl~~~~~------------~-v~~~CgH~fC~~Ci~~w~~---~~~~CP~CR~~l~  188 (242)
                      .++.|+||.-.|..            | +.--|.|.|+..||.+|+.   ....||+||+...
T Consensus        19 ~~e~CGiCRm~Fdg~Cp~Ck~PgDdCPLv~G~C~h~fh~hCI~~wl~~~tsq~~CPmcRq~~~   81 (84)
T KOG1493|consen   19 PDETCGICRMPFDGCCPDCKLPGDDCPLVWGYCLHAFHAHCILKWLNTPTSQGQCPMCRQTWQ   81 (84)
T ss_pred             CCCccceEecccCCcCCCCcCCCCCCccHHHHHHHHHHHHHHHHHhcCccccccCCcchheeE
Confidence            34589999988772            1 2235999999999999987   4579999998764

>KOG0804 consensus Cytoplasmic Zn-finger protein BRAP2 (BRCA1 associated protein) [General function prediction only]

Probab=97.55  E-value=3.4e-05  Score=71.65  Aligned_cols=48  Identities=31%  Similarity=0.676  Sum_probs=38.6

Q ss_pred             cCCccCeecccccccccc----eecCCCCcchHHHHHHHhccCCCCcCcccccc
Q 026172          139 DIEREEECGICLEICCKI----VLPDCNHSMCMRCYRNWRARSQSCPFCRDSLR  188 (242)
Q Consensus       139 ~~~~~~~C~ICl~~~~~~----v~~~CgH~fC~~Ci~~w~~~~~~CP~CR~~l~  188 (242)
                      ...+...|+||+|.+..-    +...|.|+||..|+..|.  ..+||+||-...
T Consensus       171 ~~tELPTCpVCLERMD~s~~gi~t~~c~Hsfh~~cl~~w~--~~scpvcR~~q~  222 (493)
T KOG0804|consen  171 GLTELPTCPVCLERMDSSTTGILTILCNHSFHCSCLMKWW--DSSCPVCRYCQS  222 (493)
T ss_pred             CcccCCCcchhHhhcCccccceeeeecccccchHHHhhcc--cCcChhhhhhcC
Confidence            445668999999998743    446899999999999995  478999997544

>COG5152 Uncharacterized conserved protein, contains RING and CCCH-type Zn-fingers [General function prediction only]

Probab=97.51  E-value=3.7e-05  Score=64.43  Aligned_cols=52  Identities=27%  Similarity=0.671  Sum_probs=44.2

Q ss_pred             CeecccccccccceecCCCCcchHHHHHHHhccCCCCcCcccccccccCCCccccC
Q 026172          144 EECGICLEICCKIVLPDCNHSMCMRCYRNWRARSQSCPFCRDSLRRVNSGDLWIYT  199 (242)
Q Consensus       144 ~~C~ICl~~~~~~v~~~CgH~fC~~Ci~~w~~~~~~CP~CR~~l~~~~~~~~~~~~  199 (242)
                      +.|.||-+.+..|+.+.|||.||..|...-......|-+|-....    ...|+..
T Consensus       197 F~C~iCKkdy~spvvt~CGH~FC~~Cai~~y~kg~~C~~Cgk~t~----G~f~V~~  248 (259)
T COG5152         197 FLCGICKKDYESPVVTECGHSFCSLCAIRKYQKGDECGVCGKATY----GRFWVVS  248 (259)
T ss_pred             eeehhchhhccchhhhhcchhHHHHHHHHHhccCCcceecchhhc----cceeHHh
Confidence            689999999999999999999999999888888999999966532    3456654

>KOG0297 consensus TNF receptor-associated factor [Signal transduction mechanisms]

Probab=97.49  E-value=4.7e-05  Score=71.02  Aligned_cols=49  Identities=29%  Similarity=0.727  Sum_probs=45.0

Q ss_pred             CCccCeeccccccccccee-cCCCCcchHHHHHHHhccCCCCcCcccccc
Q 026172          140 IEREEECGICLEICCKIVL-PDCNHSMCMRCYRNWRARSQSCPFCRDSLR  188 (242)
Q Consensus       140 ~~~~~~C~ICl~~~~~~v~-~~CgH~fC~~Ci~~w~~~~~~CP~CR~~l~  188 (242)
                      .+++..|++|+..+.+|+. +.|||.||..|+..|...+..||.|+..+.
T Consensus        18 ~~~~l~C~~C~~vl~~p~~~~~cgh~fC~~C~~~~~~~~~~cp~~~~~~~   67 (391)
T KOG0297|consen   18 LDENLLCPICMSVLRDPVQTTTCGHRFCAGCLLESLSNHQKCPVCRQELT   67 (391)
T ss_pred             CcccccCccccccccCCCCCCCCCCcccccccchhhccCcCCcccccccc
Confidence            4577899999999999998 499999999999999999999999988776

>KOG2879 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

Probab=97.36  E-value=0.00068  Score=59.55  Aligned_cols=51  Identities=25%  Similarity=0.558  Sum_probs=42.3

Q ss_pred             ccCCccCeeccccccccccee-cCCCCcchHHHHHHHhc--cCCCCcCcccccc
Q 026172          138 IDIEREEECGICLEICCKIVL-PDCNHSMCMRCYRNWRA--RSQSCPFCRDSLR  188 (242)
Q Consensus       138 ~~~~~~~~C~ICl~~~~~~v~-~~CgH~fC~~Ci~~w~~--~~~~CP~CR~~l~  188 (242)
                      .....+.+|++|-+....|.. .+|||.||..|+..-..  .+.+||.|..+..
T Consensus       234 s~~t~~~~C~~Cg~~PtiP~~~~~C~HiyCY~Ci~ts~~~~asf~Cp~Cg~~~~  287 (298)
T KOG2879|consen  234 STGTSDTECPVCGEPPTIPHVIGKCGHIYCYYCIATSRLWDASFTCPLCGENVE  287 (298)
T ss_pred             ccccCCceeeccCCCCCCCeeeccccceeehhhhhhhhcchhhcccCccCCCCc
Confidence            345677999999999998865 46999999999988655  5799999987765

>KOG0827 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

Probab=97.32  E-value=0.00012  Score=67.04  Aligned_cols=41  Identities=29%  Similarity=0.781  Sum_probs=31.3

Q ss_pred             Ceecccccccccc----eecCCCCcchHHHHHHHhcc--C-CCCcCcc
Q 026172          144 EECGICLEICCKI----VLPDCNHSMCMRCYRNWRAR--S-QSCPFCR  184 (242)
Q Consensus       144 ~~C~ICl~~~~~~----v~~~CgH~fC~~Ci~~w~~~--~-~~CP~CR  184 (242)
                      ..|.||.+.+...    ..-.|||.||..|+.+|++.  + ..||+|+
T Consensus         5 A~C~Ic~d~~p~~~~l~~i~~cGhifh~~cl~qwfe~~Ps~R~cpic~   52 (465)
T KOG0827|consen    5 AECHICIDGRPNDHELGPIGTCGHIFHTTCLTQWFEGDPSNRGCPICQ   52 (465)
T ss_pred             ceeeEeccCCccccccccccchhhHHHHHHHHHHHccCCccCCCCcee
Confidence            4799996554421    12249999999999999983  3 6899998

>smart00744 RINGv The RING-variant domain is a C4HC3 zinc-finger like motif found in a number of cellular and viral proteins

Probab=97.32  E-value=0.0002  Score=47.19  Aligned_cols=40  Identities=20%  Similarity=0.663  Sum_probs=30.9

Q ss_pred             eeccccc--ccccceecCCC-----CcchHHHHHHHhc--cCCCCcCcc
Q 026172          145 ECGICLE--ICCKIVLPDCN-----HSMCMRCYRNWRA--RSQSCPFCR  184 (242)
Q Consensus       145 ~C~ICl~--~~~~~v~~~Cg-----H~fC~~Ci~~w~~--~~~~CP~CR  184 (242)
                      .|-||++  .-.++...||.     |.+|..|+.+|+.  +..+||+|.
T Consensus         1 ~CrIC~~~~~~~~~l~~PC~C~G~~~~vH~~Cl~~W~~~~~~~~C~iC~   49 (49)
T smart00744        1 ICRICHDEGDEGDPLVSPCRCKGSLKYVHQECLERWINESGNKTCEICK   49 (49)
T ss_pred             CccCCCCCCCCCCeeEeccccCCchhHHHHHHHHHHHHHcCCCcCCCCC
Confidence            3889997  23345667785     8899999999996  466999994

Some of these proteins have been shown both in vivo and in vitro to have ubiquitin E3 ligase activity. The RING-variant domain is reminiscent of both the RING and the PHD domains and may represent an evolutionary intermediate. To describe this domain the term PHD/LAP domain has been used in the past. Extended description: The RING-variant (RINGv) domain contains a C4HC3 zinc-finger-like motif similar to the PHD domain, while some of the spacing between the Cys/His residues follow a pattern somewhat closer to that found in the RING domain. The RINGv domain, similar to the RING, PHD and LIM domains, is thought to bind two zinc ions co-ordinated by the highly conserved Cys and His residues. RING variant domain: C-x (2) -C-x(10-45)-C-x (1) -C-x (7) -H-x(2)-C-x(11-25)-C-x(2)-C As opposed to a PHD: C-x(1-2) -C-x (7-13)-C-x(2-4)-C-x(4-5)-H-x(2)-C-x(10-21)-C-x(2)-C Class

>KOG1813 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

Probab=97.27  E-value=0.00012  Score=64.91  Aligned_cols=45  Identities=22%  Similarity=0.542  Sum_probs=41.4

Q ss_pred             CeecccccccccceecCCCCcchHHHHHHHhccCCCCcCcccccc
Q 026172          144 EECGICLEICCKIVLPDCNHSMCMRCYRNWRARSQSCPFCRDSLR  188 (242)
Q Consensus       144 ~~C~ICl~~~~~~v~~~CgH~fC~~Ci~~w~~~~~~CP~CR~~l~  188 (242)
                      +.|-||...+..||.+.|+|.||..|...-+.++..|++|-+.+.
T Consensus       242 f~c~icr~~f~~pVvt~c~h~fc~~ca~~~~qk~~~c~vC~~~t~  286 (313)
T KOG1813|consen  242 FKCFICRKYFYRPVVTKCGHYFCEVCALKPYQKGEKCYVCSQQTH  286 (313)
T ss_pred             ccccccccccccchhhcCCceeehhhhccccccCCcceecccccc
Confidence            579999999999999999999999999888888999999977654

>PF11789 zf-Nse: Zinc-finger of the MIZ type in Nse subunit; PDB: 2YU4_A 3HTK_C

Probab=97.26  E-value=0.00016  Score=49.23  Aligned_cols=42  Identities=21%  Similarity=0.369  Sum_probs=30.3

Q ss_pred             CccCeeccccccccccee-cCCCCcchHHHHHHHhc--cCCCCcC
Q 026172          141 EREEECGICLEICCKIVL-PDCNHSMCMRCYRNWRA--RSQSCPF  182 (242)
Q Consensus       141 ~~~~~C~ICl~~~~~~v~-~~CgH~fC~~Ci~~w~~--~~~~CP~  182 (242)
                      .....|||.+..+.+|+. ..|||+|....|.+|+.  +...||.
T Consensus         9 ~~~~~CPiT~~~~~~PV~s~~C~H~fek~aI~~~i~~~~~~~CPv   53 (57)
T PF11789_consen    9 TISLKCPITLQPFEDPVKSKKCGHTFEKEAILQYIQRNGSKRCPV   53 (57)
T ss_dssp             B--SB-TTTSSB-SSEEEESSS--EEEHHHHHHHCTTTS-EE-SC
T ss_pred             EeccCCCCcCChhhCCcCcCCCCCeecHHHHHHHHHhcCCCCCCC
Confidence            345889999999999977 59999999999999994  5789998

>KOG4692 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

Probab=97.16  E-value=0.00057  Score=62.02  Aligned_cols=49  Identities=22%  Similarity=0.606  Sum_probs=44.7

Q ss_pred             CccCeecccccccccceecCCCCcchHHHHHHHhccCCCCcCccccccc
Q 026172          141 EREEECGICLEICCKIVLPDCNHSMCMRCYRNWRARSQSCPFCRDSLRR  189 (242)
Q Consensus       141 ~~~~~C~ICl~~~~~~v~~~CgH~fC~~Ci~~w~~~~~~CP~CR~~l~~  189 (242)
                      .++..|+||.......+..||+|.-|..||.+.+.+.+.|-+|+..+..
T Consensus       420 sEd~lCpICyA~pi~Avf~PC~H~SC~~CI~qHlmN~k~CFfCktTv~~  468 (489)
T KOG4692|consen  420 SEDNLCPICYAGPINAVFAPCSHRSCYGCITQHLMNCKRCFFCKTTVID  468 (489)
T ss_pred             cccccCcceecccchhhccCCCCchHHHHHHHHHhcCCeeeEecceeee
Confidence            5778999999998889999999999999999999999999999887753

>PHA03096 p28-like protein; Provisional

Probab=97.12  E-value=0.00022  Score=63.67  Aligned_cols=43  Identities=28%  Similarity=0.542  Sum_probs=32.6

Q ss_pred             Ceeccccccccc--------ceecCCCCcchHHHHHHHhc---cCCCCcCcccc
Q 026172          144 EECGICLEICCK--------IVLPDCNHSMCMRCYRNWRA---RSQSCPFCRDS  186 (242)
Q Consensus       144 ~~C~ICl~~~~~--------~v~~~CgH~fC~~Ci~~w~~---~~~~CP~CR~~  186 (242)
                      -.|+||++....        .++..|.|.||..|+..|..   ...+||.||..
T Consensus       179 k~c~ic~e~~~~k~~~~~~fgil~~c~h~fc~~ci~~wr~~~~~~e~~~~c~~~  232 (284)
T PHA03096        179 KICGICLENIKAKYIIKKYYGILSEIKHEFNIFCIKIWMTESLYKETEPENRRL  232 (284)
T ss_pred             hhcccchhhhhhhccccccccccccCCcHHHHHHHHHHHHhhhhcccCccccch
Confidence            679999997652        36789999999999999986   23455555443

>KOG4275 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

Probab=96.96  E-value=0.00017  Score=63.82  Aligned_cols=45  Identities=31%  Similarity=0.844  Sum_probs=38.1

Q ss_pred             ccCeecccccccccceecCCCCc-chHHHHHHHhccCCCCcCcccccccc
Q 026172          142 REEECGICLEICCKIVLPDCNHS-MCMRCYRNWRARSQSCPFCRDSLRRV  190 (242)
Q Consensus       142 ~~~~C~ICl~~~~~~v~~~CgH~-fC~~Ci~~w~~~~~~CP~CR~~l~~~  190 (242)
                      ...-|.||++...+.++++|||. -|.+|-...    ..||+||+-+.++
T Consensus       299 ~~~LC~ICmDaP~DCvfLeCGHmVtCt~CGkrm----~eCPICRqyi~rv  344 (350)
T KOG4275|consen  299 TRRLCAICMDAPRDCVFLECGHMVTCTKCGKRM----NECPICRQYIVRV  344 (350)
T ss_pred             HHHHHHHHhcCCcceEEeecCcEEeehhhcccc----ccCchHHHHHHHH
Confidence            36789999999999999999995 799996554    5999999977643

>KOG0825 consensus PHD Zn-finger protein [General function prediction only]

Probab=96.90  E-value=0.00024  Score=69.95  Aligned_cols=53  Identities=26%  Similarity=0.604  Sum_probs=43.2

Q ss_pred             ccCeecccccccccc---eecCCCCcchHHHHHHHhccCCCCcCcccccccccCCC
Q 026172          142 REEECGICLEICCKI---VLPDCNHSMCMRCYRNWRARSQSCPFCRDSLRRVNSGD  194 (242)
Q Consensus       142 ~~~~C~ICl~~~~~~---v~~~CgH~fC~~Ci~~w~~~~~~CP~CR~~l~~~~~~~  194 (242)
                      ....|++|+..+.+.   ...+|+|.||..|+..|.....+||+||..+.++...+
T Consensus       122 ~~~~CP~Ci~s~~DqL~~~~k~c~H~FC~~Ci~sWsR~aqTCPiDR~EF~~v~V~e  177 (1134)
T KOG0825|consen  122 VENQCPNCLKSCNDQLEESEKHTAHYFCEECVGSWSRCAQTCPVDRGEFGEVKVLE  177 (1134)
T ss_pred             hhhhhhHHHHHHHHHhhccccccccccHHHHhhhhhhhcccCchhhhhhheeeeec
Confidence            446788888877754   23579999999999999999999999999888665544

>KOG2930 consensus SCF ubiquitin ligase, Rbx1 component [Posttranslational modification, protein turnover, chaperones]

Probab=96.79  E-value=0.00071  Score=50.98  Aligned_cols=28  Identities=25%  Similarity=0.727  Sum_probs=25.7

Q ss_pred             cCCCCcchHHHHHHHhccCCCCcCcccc
Q 026172          159 PDCNHSMCMRCYRNWRARSQSCPFCRDS  186 (242)
Q Consensus       159 ~~CgH~fC~~Ci~~w~~~~~~CP~CR~~  186 (242)
                      -.|.|.||..||.+|+.....||+|...
T Consensus        79 G~CNHaFH~hCisrWlktr~vCPLdn~e  106 (114)
T KOG2930|consen   79 GVCNHAFHFHCISRWLKTRNVCPLDNKE  106 (114)
T ss_pred             eecchHHHHHHHHHHHhhcCcCCCcCcc
Confidence            3699999999999999999999999765

>KOG1814 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

Probab=96.73  E-value=0.0019  Score=59.66  Aligned_cols=44  Identities=23%  Similarity=0.560  Sum_probs=34.5

Q ss_pred             ccCeeccccccccc---ceecCCCCcchHHHHHHHhc--------cCCCCcCccc
Q 026172          142 REEECGICLEICCK---IVLPDCNHSMCMRCYRNWRA--------RSQSCPFCRD  185 (242)
Q Consensus       142 ~~~~C~ICl~~~~~---~v~~~CgH~fC~~Ci~~w~~--------~~~~CP~CR~  185 (242)
                      .-..|.||++....   .+.+||+|.||..|...+..        ..-.||-+..
T Consensus       183 slf~C~ICf~e~~G~~c~~~lpC~Hv~Ck~C~kdY~~~~i~eg~v~~l~Cp~~~C  237 (445)
T KOG1814|consen  183 SLFDCCICFEEQMGQHCFKFLPCSHVFCKSCLKDYFTIQIQEGQVSCLKCPDPKC  237 (445)
T ss_pred             hcccceeeehhhcCcceeeecccchHHHHHHHHHHHHHhhhcceeeeecCCCCCC
Confidence            34789999998775   36789999999999999876        2456776644

>KOG4739 consensus Uncharacterized protein involved in synaptonemal complex formation [Cell cycle control, cell division, chromosome partitioning; General function prediction only]

Probab=96.62  E-value=0.0012  Score=57.06  Aligned_cols=53  Identities=23%  Similarity=0.612  Sum_probs=36.7

Q ss_pred             Ceecccccccc-cc-eecCCCCcchHHHHHHHhccCCCCcCcccccccccCCCcccc
Q 026172          144 EECGICLEICC-KI-VLPDCNHSMCMRCYRNWRARSQSCPFCRDSLRRVNSGDLWIY  198 (242)
Q Consensus       144 ~~C~ICl~~~~-~~-v~~~CgH~fC~~Ci~~w~~~~~~CP~CR~~l~~~~~~~~~~~  198 (242)
                      ..|..|..... ++ .++.|+|+||..|...-.  ...||+|+.++.-+....+.+.
T Consensus         4 VhCn~C~~~~~~~~f~LTaC~HvfC~~C~k~~~--~~~C~lCkk~ir~i~l~~slp~   58 (233)
T KOG4739|consen    4 VHCNKCFRFPSQDPFFLTACRHVFCEPCLKASS--PDVCPLCKKSIRIIQLNRSLPT   58 (233)
T ss_pred             EEeccccccCCCCceeeeechhhhhhhhcccCC--ccccccccceeeeeecccccch
Confidence            35777776555 22 568999999999975432  2399999999876555554333

>KOG1571 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

Probab=96.62  E-value=0.0018  Score=58.93  Aligned_cols=47  Identities=28%  Similarity=0.700  Sum_probs=35.8

Q ss_pred             CCccCeecccccccccceecCCCCcchHHHHHHHhccCCCCcCccccccc
Q 026172          140 IEREEECGICLEICCKIVLPDCNHSMCMRCYRNWRARSQSCPFCRDSLRR  189 (242)
Q Consensus       140 ~~~~~~C~ICl~~~~~~v~~~CgH~fC~~Ci~~w~~~~~~CP~CR~~l~~  189 (242)
                      ......|.||++...+.+..+|||.-|  |..-.. ...+||+||..+..
T Consensus       302 ~~~p~lcVVcl~e~~~~~fvpcGh~cc--ct~cs~-~l~~CPvCR~rI~~  348 (355)
T KOG1571|consen  302 LPQPDLCVVCLDEPKSAVFVPCGHVCC--CTLCSK-HLPQCPVCRQRIRL  348 (355)
T ss_pred             cCCCCceEEecCCccceeeecCCcEEE--chHHHh-hCCCCchhHHHHHH
Confidence            344578999999999999999999865  554322 34559999998764

>COG5236 Uncharacterized conserved protein, contains RING Zn-finger [General function prediction only]

Probab=96.60  E-value=0.0017  Score=58.95  Aligned_cols=52  Identities=27%  Similarity=0.583  Sum_probs=43.2

Q ss_pred             cCCccCeecccccccccceecCCCCcchHHHHHHHh--ccCCCCcCcccccccc
Q 026172          139 DIEREEECGICLEICCKIVLPDCNHSMCMRCYRNWR--ARSQSCPFCRDSLRRV  190 (242)
Q Consensus       139 ~~~~~~~C~ICl~~~~~~v~~~CgH~fC~~Ci~~w~--~~~~~CP~CR~~l~~~  190 (242)
                      ..+++..|.||-+.+.-..++||+|.+|.-|..+..  ...+.||+||.....+
T Consensus        57 tDEen~~C~ICA~~~TYs~~~PC~H~~CH~Ca~RlRALY~~K~C~~CrTE~e~V  110 (493)
T COG5236          57 TDEENMNCQICAGSTTYSARYPCGHQICHACAVRLRALYMQKGCPLCRTETEAV  110 (493)
T ss_pred             cccccceeEEecCCceEEEeccCCchHHHHHHHHHHHHHhccCCCccccccceE
Confidence            445668899999999988889999999999997654  4889999999865533

>KOG1645 consensus RING-finger-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

Probab=96.46  E-value=0.0016  Score=60.07  Aligned_cols=47  Identities=26%  Similarity=0.678  Sum_probs=38.6

Q ss_pred             ccCeecccccccccc-----eecCCCCcchHHHHHHHhc--cCCCCcCcccccc
Q 026172          142 REEECGICLEICCKI-----VLPDCNHSMCMRCYRNWRA--RSQSCPFCRDSLR  188 (242)
Q Consensus       142 ~~~~C~ICl~~~~~~-----v~~~CgH~fC~~Ci~~w~~--~~~~CP~CR~~l~  188 (242)
                      ....|+||++.+.-+     +.+.|||.|-..||++|+.  ....||.|...-.
T Consensus         3 ~g~tcpiclds~~~~g~hr~vsl~cghlFgs~cie~wl~k~~~~~cp~c~~kat   56 (463)
T KOG1645|consen    3 CGTTCPICLDSYTTAGNHRIVSLQCGHLFGSQCIEKWLGKKTKMQCPLCSGKAT   56 (463)
T ss_pred             ccccCceeeeeeeecCceEEeeecccccccHHHHHHHHhhhhhhhCcccCChhH
Confidence            347899999988743     6689999999999999996  3568999977544

>PF14447 Prok-RING_4: Prokaryotic RING finger family 4

Probab=96.43  E-value=0.0017  Score=43.61  Aligned_cols=46  Identities=28%  Similarity=0.677  Sum_probs=37.0

Q ss_pred             ccCeecccccccccceecCCCCcchHHHHHHHhccCCCCcCccccccc
Q 026172          142 REEECGICLEICCKIVLPDCNHSMCMRCYRNWRARSQSCPFCRDSLRR  189 (242)
Q Consensus       142 ~~~~C~ICl~~~~~~v~~~CgH~fC~~Ci~~w~~~~~~CP~CR~~l~~  189 (242)
                      .+..|-.|...-...++++|||..|..|..-+  +-+.||+|-.++..
T Consensus         6 ~~~~~~~~~~~~~~~~~~pCgH~I~~~~f~~~--rYngCPfC~~~~~~   51 (55)
T PF14447_consen    6 PEQPCVFCGFVGTKGTVLPCGHLICDNCFPGE--RYNGCPFCGTPFEF   51 (55)
T ss_pred             cceeEEEccccccccccccccceeeccccChh--hccCCCCCCCcccC
Confidence            44677788888778888999999999997554  56899999887753

>KOG4185 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

Probab=96.36  E-value=0.0025  Score=56.92  Aligned_cols=44  Identities=32%  Similarity=0.757  Sum_probs=37.3

Q ss_pred             Ceecccccccc------cceecCCCCcchHHHHHHHhc-cCCCCcCccccc
Q 026172          144 EECGICLEICC------KIVLPDCNHSMCMRCYRNWRA-RSQSCPFCRDSL  187 (242)
Q Consensus       144 ~~C~ICl~~~~------~~v~~~CgH~fC~~Ci~~w~~-~~~~CP~CR~~l  187 (242)
                      ..|.||-+.+.      .|..+.|||++|..|+..... ....||+||.+.
T Consensus         4 ~~c~~c~~~~s~~~~~~~p~~l~c~h~~c~~c~~~l~~~~~i~cpfcR~~~   54 (296)
T KOG4185|consen    4 PECEICNEDYSSEDGDHIPRVLKCGHTICQNCASKLLGNSRILCPFCRETT   54 (296)
T ss_pred             CceeecCccccccCcccCCcccccCceehHhHHHHHhcCceeeccCCCCcc
Confidence            57999999988      356678999999999998776 567889999985

>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]

Probab=95.94  E-value=0.0031  Score=62.88  Aligned_cols=66  Identities=23%  Similarity=0.361  Sum_probs=46.2

Q ss_pred             HHHhHHHHhhhcccccCCCccccC----CccCeecccccccccc-eecCCCCcchHHHHHHHhccCCCCcCccc
Q 026172          117 KEICDAKYKKKGRMDKGKLSEIDI----EREEECGICLEICCKI-VLPDCNHSMCMRCYRNWRARSQSCPFCRD  185 (242)
Q Consensus       117 ~~~~~e~~~~~~~~~~~~~~~~~~----~~~~~C~ICl~~~~~~-v~~~CgH~fC~~Ci~~w~~~~~~CP~CR~  185 (242)
                      .+...++|.+..++-+..+.....    -....|..|-..+.-| |...|||.||.+|+.   .+...||-|+.
T Consensus       810 d~~~Ie~yk~~i~e~r~~l~~lr~sa~i~q~skCs~C~~~LdlP~VhF~CgHsyHqhC~e---~~~~~CP~C~~  880 (933)
T KOG2114|consen  810 DEDAIEVYKKDIEEKRQELETLRTSAQIFQVSKCSACEGTLDLPFVHFLCGHSYHQHCLE---DKEDKCPKCLP  880 (933)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHhhcccceeeeeeecccCCccccceeeeecccHHHHHhhc---cCcccCCccch
Confidence            344456666655544433332222    2336899999999977 567899999999988   57899999976

>KOG1941 consensus Acetylcholine receptor-associated protein of the synapse (rapsyn) [Extracellular structures]

Probab=95.93  E-value=0.0042  Score=57.15  Aligned_cols=46  Identities=33%  Similarity=0.629  Sum_probs=37.0

Q ss_pred             CCccCeecccccccccc----eecCCCCcchHHHHHHHhc--cCCCCcCccc
Q 026172          140 IEREEECGICLEICCKI----VLPDCNHSMCMRCYRNWRA--RSQSCPFCRD  185 (242)
Q Consensus       140 ~~~~~~C~ICl~~~~~~----v~~~CgH~fC~~Ci~~w~~--~~~~CP~CR~  185 (242)
                      .+-++.|..|-+.+-..    --+||.|.||.+|+..++.  ...+||.||.
T Consensus       362 ~e~~L~Cg~CGe~~Glk~e~LqALpCsHIfH~rCl~e~L~~n~~rsCP~Crk  413 (518)
T KOG1941|consen  362 EETELYCGLCGESIGLKNERLQALPCSHIFHLRCLQEILENNGTRSCPNCRK  413 (518)
T ss_pred             HHHhhhhhhhhhhhcCCcccccccchhHHHHHHHHHHHHHhCCCCCCccHHH
Confidence            34568899999987622    2378999999999999887  4789999994

>KOG1001 consensus Helicase-like transcription factor HLTF/DNA helicase RAD5, DEAD-box superfamily [Transcription; Replication, recombination and repair]

Probab=95.78  E-value=0.0033  Score=62.45  Aligned_cols=48  Identities=25%  Similarity=0.755  Sum_probs=40.0

Q ss_pred             CeecccccccccceecCCCCcchHHHHHHHhc--cCCCCcCcccccccccC
Q 026172          144 EECGICLEICCKIVLPDCNHSMCMRCYRNWRA--RSQSCPFCRDSLRRVNS  192 (242)
Q Consensus       144 ~~C~ICl~~~~~~v~~~CgH~fC~~Ci~~w~~--~~~~CP~CR~~l~~~~~  192 (242)
                      ..|.+|++ ...++.++|||.||..|+...+.  ....||.||..+.....
T Consensus       455 ~~c~ic~~-~~~~~it~c~h~~c~~c~~~~i~~~~~~~~~~cr~~l~~~~l  504 (674)
T KOG1001|consen  455 HWCHICCD-LDSFFITRCGHDFCVECLKKSIQQSENAPCPLCRNVLKEKKL  504 (674)
T ss_pred             cccccccc-cccceeecccchHHHHHHHhccccccCCCCcHHHHHHHHHHH
Confidence            89999999 77788899999999999988766  34479999998874433

>KOG1428 consensus Inhibitor of type V adenylyl cyclases/Neuronal presynaptic protein Highwire/PAM/RPM-1 [Signal transduction mechanisms]

Probab=95.73  E-value=0.0083  Score=62.99  Aligned_cols=54  Identities=26%  Similarity=0.642  Sum_probs=40.4

Q ss_pred             ccCeecccccccc---cceecCCCCcchHHHHHHHhcc----------CCCCcCcccccccccCCCc
Q 026172          142 REEECGICLEICC---KIVLPDCNHSMCMRCYRNWRAR----------SQSCPFCRDSLRRVNSGDL  195 (242)
Q Consensus       142 ~~~~C~ICl~~~~---~~v~~~CgH~fC~~Ci~~w~~~----------~~~CP~CR~~l~~~~~~~~  195 (242)
                      .+..|-||+..--   ..+.+.|+|.||..|.+..+++          -.+||+|..++...-..++
T Consensus      3485 ~DDmCmICFTE~L~AAP~IqL~C~HiFHlqC~R~vLE~RW~GPRItF~FisCPiC~n~InH~~LkDL 3551 (3738)
T KOG1428|consen 3485 ADDMCMICFTEALSAAPAIQLDCSHIFHLQCCRRVLENRWLGPRITFGFISCPICKNKINHIVLKDL 3551 (3738)
T ss_pred             cCceEEEEehhhhCCCcceecCCccchhHHHHHHHHHhcccCCeeEEeeeecccccchhhhHHHHHH
Confidence            4567888886532   3478999999999999776552          3599999999886655554

>PF10367 Vps39_2: Vacuolar sorting protein 39 domain 2; InterPro: IPR019453 This entry represents a domain found in the vacuolar sorting protein Vps39 and transforming growth factor beta receptor-associated protein Trap1

Probab=95.69  E-value=0.0089  Score=44.89  Aligned_cols=34  Identities=21%  Similarity=0.520  Sum_probs=27.7

Q ss_pred             ccCCccCeecccccccccc--eecCCCCcchHHHHH
Q 026172          138 IDIEREEECGICLEICCKI--VLPDCNHSMCMRCYR  171 (242)
Q Consensus       138 ~~~~~~~~C~ICl~~~~~~--v~~~CgH~fC~~Ci~  171 (242)
                      ....++..|++|...+...  +..||||.||..|+.
T Consensus        73 v~i~~~~~C~vC~k~l~~~~f~~~p~~~v~H~~C~~  108 (109)
T PF10367_consen   73 VVITESTKCSVCGKPLGNSVFVVFPCGHVVHYSCIK  108 (109)
T ss_pred             EEECCCCCccCcCCcCCCceEEEeCCCeEEeccccc
Confidence            4556778899999998854  457899999999974

Vps39, a component of the C-Vps complex, is thought to be required for the fusion of endosomes and other types of transport intermediates with the vacuole [, ]. In Saccharomyces cerevisiae (Baker's yeast), Vps39 has been shown to stimulate nucleotide exchange []. Trap1 plays a role in the TGF-beta/activin signaling pathway. It associates with inactive heteromeric TGF-beta and activin receptor complexes, mainly through the type II receptor, and is released upon activation of signaling [, ]. The precise function of this domain has not been characterised In Vps39 this domain is involved in localisation and in mediating the interactions with Vps11 [].

>KOG3002 consensus Zn finger protein [General function prediction only]

Probab=95.52  E-value=0.0082  Score=54.07  Aligned_cols=45  Identities=24%  Similarity=0.579  Sum_probs=37.4

Q ss_pred             CccCeecccccccccceec-CCCCcchHHHHHHHhccCCCCcCcccccc
Q 026172          141 EREEECGICLEICCKIVLP-DCNHSMCMRCYRNWRARSQSCPFCRDSLR  188 (242)
Q Consensus       141 ~~~~~C~ICl~~~~~~v~~-~CgH~fC~~Ci~~w~~~~~~CP~CR~~l~  188 (242)
                      .+-++||||.+.+..|+.- +=||.-|..|-.+   .+..||.||.++.
T Consensus        46 ~~lleCPvC~~~l~~Pi~QC~nGHlaCssC~~~---~~~~CP~Cr~~~g   91 (299)
T KOG3002|consen   46 LDLLDCPVCFNPLSPPIFQCDNGHLACSSCRTK---VSNKCPTCRLPIG   91 (299)
T ss_pred             hhhccCchhhccCcccceecCCCcEehhhhhhh---hcccCCccccccc
Confidence            4558999999999988753 3389999999754   5799999999987

>PF04641 Rtf2: Rtf2 RING-finger

Probab=95.39  E-value=0.026  Score=49.82  Aligned_cols=50  Identities=16%  Similarity=0.384  Sum_probs=40.4

Q ss_pred             CCccCeeccccccccc----ceecCCCCcchHHHHHHHhccCCCCcCcccccccc
Q 026172          140 IEREEECGICLEICCK----IVLPDCNHSMCMRCYRNWRARSQSCPFCRDSLRRV  190 (242)
Q Consensus       140 ~~~~~~C~ICl~~~~~----~v~~~CgH~fC~~Ci~~w~~~~~~CP~CR~~l~~~  190 (242)
                      ......|||....+..    ..+.+|||+|+..++.+.. ....||+|-.++...
T Consensus       110 ~~~~~~CPvt~~~~~~~~~fv~l~~cG~V~s~~alke~k-~~~~Cp~c~~~f~~~  163 (260)
T PF04641_consen  110 SEGRFICPVTGKEFNGKHKFVYLRPCGCVFSEKALKELK-KSKKCPVCGKPFTEE  163 (260)
T ss_pred             CCceeECCCCCcccCCceeEEEEcCCCCEeeHHHHHhhc-ccccccccCCccccC
Confidence            3566899999998863    3456999999999999974 467899999998743

>PF14570 zf-RING_4: RING/Ubox like zinc-binding domain; PDB: 1E4U_A 1UR6_B

Probab=95.13  E-value=0.021  Score=37.34  Aligned_cols=42  Identities=26%  Similarity=0.696  Sum_probs=21.6

Q ss_pred             ecccccccccc--eec--CCCCcchHHHHHHHhc-cCCCCcCccccc
Q 026172          146 CGICLEICCKI--VLP--DCNHSMCMRCYRNWRA-RSQSCPFCRDSL  187 (242)
Q Consensus       146 C~ICl~~~~~~--v~~--~CgH~fC~~Ci~~w~~-~~~~CP~CR~~l  187 (242)
                      |++|.+.+...  ...  +||+..|..|+.+-.. ....||-||.+.
T Consensus         1 cp~C~e~~d~~d~~~~PC~Cgf~IC~~C~~~i~~~~~g~CPgCr~~Y   47 (48)
T PF14570_consen    1 CPLCDEELDETDKDFYPCECGFQICRFCYHDILENEGGRCPGCREPY   47 (48)
T ss_dssp             -TTTS-B--CCCTT--SSTTS----HHHHHHHTTSS-SB-TTT--B-
T ss_pred             CCCcccccccCCCccccCcCCCcHHHHHHHHHHhccCCCCCCCCCCC
Confidence            78888887422  222  6899999999999886 689999999874

>KOG4367 consensus Predicted Zn-finger protein [Function unknown]

Probab=95.12  E-value=0.012  Score=55.05  Aligned_cols=35  Identities=29%  Similarity=0.686  Sum_probs=31.9

Q ss_pred             CccCeecccccccccceecCCCCcchHHHHHHHhc
Q 026172          141 EREEECGICLEICCKIVLPDCNHSMCMRCYRNWRA  175 (242)
Q Consensus       141 ~~~~~C~ICl~~~~~~v~~~CgH~fC~~Ci~~w~~  175 (242)
                      ++++.|+||...+.+|+.++|+|..|..|.+..+.
T Consensus         2 eeelkc~vc~~f~~epiil~c~h~lc~~ca~~~~~   36 (699)
T KOG4367|consen    2 EEELKCPVCGSFYREPIILPCSHNLCQACARNILV   36 (699)
T ss_pred             cccccCceehhhccCceEeecccHHHHHHHHhhcc
Confidence            57899999999999999999999999999987654

>KOG3039 consensus Uncharacterized conserved protein [Function unknown]

Probab=95.09  E-value=0.018  Score=50.12  Aligned_cols=49  Identities=14%  Similarity=0.259  Sum_probs=42.6

Q ss_pred             ccCeecccccccccc----eecCCCCcchHHHHHHHhccCCCCcCcccccccc
Q 026172          142 REEECGICLEICCKI----VLPDCNHSMCMRCYRNWRARSQSCPFCRDSLRRV  190 (242)
Q Consensus       142 ~~~~C~ICl~~~~~~----v~~~CgH~fC~~Ci~~w~~~~~~CP~CR~~l~~~  190 (242)
                      ....|+||.+.+...    ++-+|||+||..|+++.......||+|-.+++..
T Consensus       220 ~ryiCpvtrd~LtNt~~ca~Lr~sg~Vv~~ecvEklir~D~v~pv~d~plkdr  272 (303)
T KOG3039|consen  220 KRYICPVTRDTLTNTTPCAVLRPSGHVVTKECVEKLIRKDMVDPVTDKPLKDR  272 (303)
T ss_pred             cceecccchhhhcCccceEEeccCCcEeeHHHHHHhccccccccCCCCcCccc
Confidence            457899999998853    5679999999999999999999999999888744

>PHA02825 LAP/PHD finger-like protein; Provisional

Probab=94.98  E-value=0.034  Score=45.34  Aligned_cols=47  Identities=21%  Similarity=0.551  Sum_probs=35.9

Q ss_pred             CccCeecccccccccceecCCCC-----cchHHHHHHHhc--cCCCCcCcccccc
Q 026172          141 EREEECGICLEICCKIVLPDCNH-----SMCMRCYRNWRA--RSQSCPFCRDSLR  188 (242)
Q Consensus       141 ~~~~~C~ICl~~~~~~v~~~CgH-----~fC~~Ci~~w~~--~~~~CP~CR~~l~  188 (242)
                      ..+..|-||.+..... .-||..     .-|.+|+++|..  +...|+.|+.+..
T Consensus         6 ~~~~~CRIC~~~~~~~-~~PC~CkGs~k~VH~sCL~rWi~~s~~~~CeiC~~~Y~   59 (162)
T PHA02825          6 LMDKCCWICKDEYDVV-TNYCNCKNENKIVHKECLEEWINTSKNKSCKICNGPYN   59 (162)
T ss_pred             CCCCeeEecCCCCCCc-cCCcccCCCchHHHHHHHHHHHhcCCCCcccccCCeEE
Confidence            4667999999886533 345643     349999999987  6789999998765

>COG5222 Uncharacterized conserved protein, contains RING Zn-finger [General function prediction only]

Probab=94.88  E-value=0.016  Score=51.80  Aligned_cols=42  Identities=21%  Similarity=0.558  Sum_probs=35.8

Q ss_pred             Ceecccccccccceec-CCCCcchHHHHHHHh-ccCCCCcCccc
Q 026172          144 EECGICLEICCKIVLP-DCNHSMCMRCYRNWR-ARSQSCPFCRD  185 (242)
Q Consensus       144 ~~C~ICl~~~~~~v~~-~CgH~fC~~Ci~~w~-~~~~~CP~CR~  185 (242)
                      +.|+.|-..+..++.+ -|+|.||..||..-+ ...+.||.|-.
T Consensus       275 LkCplc~~Llrnp~kT~cC~~~fc~eci~~al~dsDf~CpnC~r  318 (427)
T COG5222         275 LKCPLCHCLLRNPMKTPCCGHTFCDECIGTALLDSDFKCPNCSR  318 (427)
T ss_pred             ccCcchhhhhhCcccCccccchHHHHHHhhhhhhccccCCCccc
Confidence            7899999999988776 679999999998754 47899999943

>PF07800 DUF1644: Protein of unknown function (DUF1644); InterPro: IPR012866 This family consists of sequences found in a number of hypothetical plant proteins of unknown function

Probab=94.86  E-value=0.022  Score=46.40  Aligned_cols=34  Identities=26%  Similarity=0.544  Sum_probs=24.9

Q ss_pred             ccCeecccccccccceecCCC------------Cc-chHHHHHHHhc
Q 026172          142 REEECGICLEICCKIVLPDCN------------HS-MCMRCYRNWRA  175 (242)
Q Consensus       142 ~~~~C~ICl~~~~~~v~~~Cg------------H~-fC~~Ci~~w~~  175 (242)
                      ++..|+||||..-+.|++-|.            .. -|..|+.++..
T Consensus         1 ed~~CpICme~PHNAVLLlCSS~~kgcRpymc~Ts~rhSNCLdqfkk   47 (162)
T PF07800_consen    1 EDVTCPICMEHPHNAVLLLCSSHEKGCRPYMCDTSYRHSNCLDQFKK   47 (162)
T ss_pred             CCccCceeccCCCceEEEEeccccCCccccccCCccchhHHHHHHHH
Confidence            356899999999988887552            22 26789988754

The region of interest contains nine highly conserved cysteine residues and is approximately 160 amino acids in length, which probably represent a zinc-binding domain.

>PF05290 Baculo_IE-1: Baculovirus immediate-early protein (IE-0); InterPro: IPR007954 This entry contains the Baculovirus immediate-early protein IE-0

Probab=94.66  E-value=0.03  Score=44.27  Aligned_cols=49  Identities=31%  Similarity=0.676  Sum_probs=38.9

Q ss_pred             ccCeecccccccccceec----CCCCcchHHHHHHHhc---cCCCCcCcccccccc
Q 026172          142 REEECGICLEICCKIVLP----DCNHSMCMRCYRNWRA---RSQSCPFCRDSLRRV  190 (242)
Q Consensus       142 ~~~~C~ICl~~~~~~v~~----~CgH~fC~~Ci~~w~~---~~~~CP~CR~~l~~~  190 (242)
                      .--+|.||.|.-.+...+    =||-..|..|....|.   ....||.|+.+++..
T Consensus        79 ~lYeCnIC~etS~ee~FLKPneCCgY~iCn~Cya~LWK~~~~ypvCPvCkTSFKss  134 (140)
T PF05290_consen   79 KLYECNICKETSAEERFLKPNECCGYSICNACYANLWKFCNLYPVCPVCKTSFKSS  134 (140)
T ss_pred             CceeccCcccccchhhcCCcccccchHHHHHHHHHHHHHcccCCCCCccccccccc
Confidence            557999999987765433    2899999999988555   578999999998743

>KOG4445 consensus Uncharacterized conserved protein, contains RWD domain [Function unknown]

Probab=94.45  E-value=0.019  Score=51.25  Aligned_cols=47  Identities=26%  Similarity=0.687  Sum_probs=37.3

Q ss_pred             ccCeecccccccccc---eecCCCCcchHHHHHHHhc-----------------------cCCCCcCcccccc
Q 026172          142 REEECGICLEICCKI---VLPDCNHSMCMRCYRNWRA-----------------------RSQSCPFCRDSLR  188 (242)
Q Consensus       142 ~~~~C~ICl~~~~~~---v~~~CgH~fC~~Ci~~w~~-----------------------~~~~CP~CR~~l~  188 (242)
                      ....|.||+--|.+.   ..+.|-|.||..|+.+++.                       ....||+||..++
T Consensus       114 p~gqCvICLygfa~~~~ft~T~C~Hy~H~~ClaRyl~~~~~~lrqe~q~~~~~~qh~~~~~eavcpVcre~i~  186 (368)
T KOG4445|consen  114 PNGQCVICLYGFASSPAFTVTACDHYMHFACLARYLTECLTGLRQEIQDAQKERQHMKEQVEAVCPVCRERIK  186 (368)
T ss_pred             CCCceEEEEEeecCCCceeeehhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHhhhhhHhhhhcc
Confidence            446899999888743   5688999999999977764                       1247999999887

>KOG3800 consensus Predicted E3 ubiquitin ligase containing RING finger, subunit of transcription/repair factor TFIIH and CDK-activating kinase assembly factor [Posttranslational modification, protein turnover, chaperones]

Probab=94.40  E-value=0.056  Score=48.06  Aligned_cols=46  Identities=24%  Similarity=0.582  Sum_probs=34.3

Q ss_pred             eecccccccc-cc----eecCCCCcchHHHHHHHhc-cCCCCcCcccccccc
Q 026172          145 ECGICLEICC-KI----VLPDCNHSMCMRCYRNWRA-RSQSCPFCRDSLRRV  190 (242)
Q Consensus       145 ~C~ICl~~~~-~~----v~~~CgH~fC~~Ci~~w~~-~~~~CP~CR~~l~~~  190 (242)
                      .|++|-...- .|    ..-+|+|..|.+|+...+. +...||-|-..+...
T Consensus         2 ~Cp~CKt~~Y~np~lk~~in~C~H~lCEsCvd~iF~~g~~~CpeC~~iLRk~   53 (300)
T KOG3800|consen    2 ACPKCKTDRYLNPDLKLMINECGHRLCESCVDRIFSLGPAQCPECMVILRKN   53 (300)
T ss_pred             CCcccccceecCccceeeeccccchHHHHHHHHHHhcCCCCCCcccchhhhc
Confidence            5888876422 22    2238999999999999877 788999998776543

>KOG0826 consensus Predicted E3 ubiquitin ligase involved in peroxisome organization [Posttranslational modification, protein turnover, chaperones]

Probab=93.82  E-value=0.035  Score=50.16  Aligned_cols=45  Identities=22%  Similarity=0.442  Sum_probs=37.1

Q ss_pred             ccCeecccccccccc-eecCCCCcchHHHHHHHhccCCCCcCcccc
Q 026172          142 REEECGICLEICCKI-VLPDCNHSMCMRCYRNWRARSQSCPFCRDS  186 (242)
Q Consensus       142 ~~~~C~ICl~~~~~~-v~~~CgH~fC~~Ci~~w~~~~~~CP~CR~~  186 (242)
                      +...|+||+..-..| ++.--|-+||..|+-++....+.||+=-.|
T Consensus       299 ~~~~CpvClk~r~Nptvl~vSGyVfCY~Ci~~Yv~~~~~CPVT~~p  344 (357)
T KOG0826|consen  299 DREVCPVCLKKRQNPTVLEVSGYVFCYPCIFSYVVNYGHCPVTGYP  344 (357)
T ss_pred             ccccChhHHhccCCCceEEecceEEeHHHHHHHHHhcCCCCccCCc
Confidence            447899999998877 444469999999999999999999975444

>PHA02862 5L protein; Provisional

Probab=93.76  E-value=0.066  Score=43.00  Aligned_cols=44  Identities=20%  Similarity=0.708  Sum_probs=34.7

Q ss_pred             CeecccccccccceecCCCC-----cchHHHHHHHhc--cCCCCcCcccccc
Q 026172          144 EECGICLEICCKIVLPDCNH-----SMCMRCYRNWRA--RSQSCPFCRDSLR  188 (242)
Q Consensus       144 ~~C~ICl~~~~~~v~~~CgH-----~fC~~Ci~~w~~--~~~~CP~CR~~l~  188 (242)
                      ..|=||.+.-.+.+ -||..     .-|..|+.+|+.  +...||+|+.+..
T Consensus         3 diCWIC~~~~~e~~-~PC~C~GS~K~VHq~CL~~WIn~S~k~~CeLCkteY~   53 (156)
T PHA02862          3 DICWICNDVCDERN-NFCGCNEEYKVVHIKCMQLWINYSKKKECNLCKTKYN   53 (156)
T ss_pred             CEEEEecCcCCCCc-ccccccCcchhHHHHHHHHHHhcCCCcCccCCCCeEE
Confidence            57999999876554 44643     469999999997  6789999998765

>KOG2034 consensus Vacuolar sorting protein PEP3/VPS18 [Intracellular trafficking, secretion, and vesicular transport]

Probab=93.04  E-value=0.076  Score=53.61  Aligned_cols=36  Identities=17%  Similarity=0.306  Sum_probs=28.9

Q ss_pred             cCCccCeeccccccccc-c-eecCCCCcchHHHHHHHh
Q 026172          139 DIEREEECGICLEICCK-I-VLPDCNHSMCMRCYRNWR  174 (242)
Q Consensus       139 ~~~~~~~C~ICl~~~~~-~-v~~~CgH~fC~~Ci~~w~  174 (242)
                      ..+....|.+|.-.+.. | ++.+|||.||..|+.+-.
T Consensus       813 v~ep~d~C~~C~~~ll~~pF~vf~CgH~FH~~Cl~~~v  850 (911)
T KOG2034|consen  813 VLEPQDSCDHCGRPLLIKPFYVFPCGHCFHRDCLIRHV  850 (911)
T ss_pred             EecCccchHHhcchhhcCcceeeeccchHHHHHHHHHH
Confidence            55678899999988663 3 567899999999997753

>KOG2932 consensus E3 ubiquitin ligase involved in ubiquitination of E-cadherin complex [Posttranslational modification, protein turnover, chaperones]

Probab=93.03  E-value=0.045  Score=49.15  Aligned_cols=46  Identities=26%  Similarity=0.661  Sum_probs=33.7

Q ss_pred             cCeecccccccc-cceecCCCCcchHHHHHHHhccCCCCcCcccccccc
Q 026172          143 EEECGICLEICC-KIVLPDCNHSMCMRCYRNWRARSQSCPFCRDSLRRV  190 (242)
Q Consensus       143 ~~~C~ICl~~~~-~~v~~~CgH~fC~~Ci~~w~~~~~~CP~CR~~l~~~  190 (242)
                      -..|.-|--.+. -..+.+|.|+||.+|.+.  ...+.||.|-..+.++
T Consensus        90 VHfCd~Cd~PI~IYGRmIPCkHvFCl~CAr~--~~dK~Cp~C~d~VqrI  136 (389)
T KOG2932|consen   90 VHFCDRCDFPIAIYGRMIPCKHVFCLECARS--DSDKICPLCDDRVQRI  136 (389)
T ss_pred             eEeecccCCcceeeecccccchhhhhhhhhc--CccccCcCcccHHHHH
Confidence            456777766555 235678999999999754  2368999998877644

>KOG3268 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

Probab=93.02  E-value=0.084  Score=43.90  Aligned_cols=45  Identities=27%  Similarity=0.700  Sum_probs=32.4

Q ss_pred             Ceecccccccccc-------eecCCCCcchHHHHHHHhcc------C-----CCCcCcccccc
Q 026172          144 EECGICLEICCKI-------VLPDCNHSMCMRCYRNWRAR------S-----QSCPFCRDSLR  188 (242)
Q Consensus       144 ~~C~ICl~~~~~~-------v~~~CgH~fC~~Ci~~w~~~------~-----~~CP~CR~~l~  188 (242)
                      ..|+||...--+.       -...||..||.-|+..|+..      +     ..||.|..|+.
T Consensus       166 ~~cgicyayqldGTipDqtCdN~qCgkpFHqiCL~dWLRgilTsRQSFdiiFGeCPYCS~Pia  228 (234)
T KOG3268|consen  166 GACGICYAYQLDGTIPDQTCDNIQCGKPFHQICLTDWLRGILTSRQSFDIIFGECPYCSDPIA  228 (234)
T ss_pred             hcccceeeeecCCccccccccccccCCcHHHHHHHHHHHHHhhccceeeeeeccCCCCCCcce
Confidence            4566666543322       22479999999999999872      2     38999998876

>KOG3970 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

Probab=92.79  E-value=0.086  Score=45.40  Aligned_cols=48  Identities=19%  Similarity=0.486  Sum_probs=39.3

Q ss_pred             CccCeeccccccccc--ceecCCCCcchHHHHHHHhc--------cCCCCcCcccccc
Q 026172          141 EREEECGICLEICCK--IVLPDCNHSMCMRCYRNWRA--------RSQSCPFCRDSLR  188 (242)
Q Consensus       141 ~~~~~C~ICl~~~~~--~v~~~CgH~fC~~Ci~~w~~--------~~~~CP~CR~~l~  188 (242)
                      .....|..|-..+..  .+.+.|-|.||.+|+..|..        .+-.||.|..++-
T Consensus        48 DY~pNC~LC~t~La~gdt~RLvCyhlfHW~ClneraA~lPanTAPaGyqCP~Cs~eiF  105 (299)
T KOG3970|consen   48 DYNPNCRLCNTPLASGDTTRLVCYHLFHWKCLNERAANLPANTAPAGYQCPCCSQEIF  105 (299)
T ss_pred             CCCCCCceeCCccccCcceeehhhhhHHHHHhhHHHhhCCCcCCCCcccCCCCCCccC
Confidence            355789999998874  47789999999999999976        3679999987763

>KOG1100 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

Probab=92.63  E-value=0.055  Score=46.27  Aligned_cols=40  Identities=30%  Similarity=0.725  Sum_probs=33.1

Q ss_pred             eecccccccccceecCCCCc-chHHHHHHHhccCCCCcCcccccc
Q 026172          145 ECGICLEICCKIVLPDCNHS-MCMRCYRNWRARSQSCPFCRDSLR  188 (242)
Q Consensus       145 ~C~ICl~~~~~~v~~~CgH~-fC~~Ci~~w~~~~~~CP~CR~~l~  188 (242)
                      .|-.|.+.-..++++||.|. +|..|-..    -..||+|+.+..
T Consensus       160 ~Cr~C~~~~~~VlllPCrHl~lC~~C~~~----~~~CPiC~~~~~  200 (207)
T KOG1100|consen  160 SCRKCGEREATVLLLPCRHLCLCGICDES----LRICPICRSPKT  200 (207)
T ss_pred             cceecCcCCceEEeecccceEeccccccc----CccCCCCcChhh
Confidence            39999999999899999985 89999543    467999988754

>PF08746 zf-RING-like: RING-like domain; InterPro: IPR014857 This is a zinc finger domain that is related to the C3HC4 RING finger domain (IPR001841 from INTERPRO)

Probab=92.49  E-value=0.14  Score=32.59  Aligned_cols=38  Identities=29%  Similarity=0.739  Sum_probs=22.5

Q ss_pred             eccccccccccee-c--CCCCcchHHHHHHHhccC--CCCcCc
Q 026172          146 CGICLEICCKIVL-P--DCNHSMCMRCYRNWRARS--QSCPFC  183 (242)
Q Consensus       146 C~ICl~~~~~~v~-~--~CgH~fC~~Ci~~w~~~~--~~CP~C  183 (242)
                      |.+|.+.....+. .  .|+=.+|..|+..++...  ..||.|
T Consensus         1 C~~C~~iv~~G~~C~~~~C~~r~H~~C~~~y~r~~~~~~CP~C   43 (43)
T PF08746_consen    1 CEACKEIVTQGQRCSNRDCNVRLHDDCFKKYFRHRSNPKCPNC   43 (43)
T ss_dssp             -TTT-SB-SSSEE-SS--S--EE-HHHHHHHTTT-SS-B-TTT
T ss_pred             CcccchhHeeeccCCCCccCchHHHHHHHHHHhcCCCCCCcCC
Confidence            6788888776654 3  599999999999988743  379987

; PDB: 3NW0_A 2CT0_A.

>PF03854 zf-P11: P-11 zinc finger; InterPro: IPR003224 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule

Probab=92.48  E-value=0.051  Score=35.34  Aligned_cols=37  Identities=30%  Similarity=0.713  Sum_probs=24.9

Q ss_pred             cccceecCCC-CcchHHHHHHHhccCCCCcCccccccc
Q 026172          153 CCKIVLPDCN-HSMCMRCYRNWRARSQSCPFCRDSLRR  189 (242)
Q Consensus       153 ~~~~v~~~Cg-H~fC~~Ci~~w~~~~~~CP~CR~~l~~  189 (242)
                      |.+..+..|. |..|..|+...+.++..||+|..+++.
T Consensus        10 f~~k~Li~C~dHYLCl~CLt~ml~~s~~C~iC~~~LPt   47 (50)
T PF03854_consen   10 FANKGLIKCSDHYLCLNCLTLMLSRSDRCPICGKPLPT   47 (50)
T ss_dssp             S--SSEEE-SS-EEEHHHHHHT-SSSSEETTTTEE---
T ss_pred             hcCCCeeeecchhHHHHHHHHHhccccCCCcccCcCcc
Confidence            3344456685 899999999999999999999988763

Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. The RING-finger is a specialised type of Zn-finger of 40 to 60 residues that binds two atoms of zinc, and is probably involved in mediating protein-protein interactions [, , ]. There are two different variants, the C3HC4-type and a C3H2C3-type, which is clearly related despite the different cysteine/histidine pattern. The latter type is sometimes referred to as 'RING-H2 finger'. The RING domain is a protein interaction domain which has been implicated in a range of diverse biological processes. Several 3D-structures for RING-fingers are known [, ]. The 3D structure of the zinc ligation system is unique to the RING domain and is referred to as the 'cross-brace' motif. The spacing of the cysteines in such a domain is: C-x(2)-C-x(9 to 39)-C-x(1 to 3)-H-x(2 to 3)-C-x(2)-C-x(4 to 48)-C-x(2)-C Metal ligand pairs one and three co-ordinate to bind one zinc ion, whilst pairs two and four bind the second. This entry represents RING finger protein Z, a small polypeptide found in some negative-strand RNA viruses including Lassa fever virus, which plays a crucial role in virion assembly and budding. RING finger Z has been shown to interact with several host proteins, including promyelocytic leukemia protein and the eukaryotic translation initiation factor 4E [, ]. It is sufficient in the absence of any other viral proteins to release virus-like particles from the infected cell []. This protein is also responsible for arenavirus superinfection exclusion; expression of this protein in a host cell strongly and specifically inhibits areanavirus transcription and replication []. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0003723 RNA binding, 0008270 zinc ion binding; PDB: 2KO5_A.

>PF10272 Tmpp129: Putative transmembrane protein precursor; InterPro: IPR018801 This entry consists of proteins conserved from worms to humans

Probab=92.21  E-value=0.12  Score=47.68  Aligned_cols=28  Identities=29%  Similarity=0.755  Sum_probs=22.0

Q ss_pred             CCcchHHHHHHHhc-------------cCCCCcCccccccc
Q 026172          162 NHSMCMRCYRNWRA-------------RSQSCPFCRDSLRR  189 (242)
Q Consensus       162 gH~fC~~Ci~~w~~-------------~~~~CP~CR~~l~~  189 (242)
                      .-..|..|+-+|+.             ++..||.||+.+.-
T Consensus       312 RPmWC~~Cm~kwFasrQd~~~~~~Wl~~~~~CPtCRa~FCi  352 (358)
T PF10272_consen  312 RPMWCLECMGKWFASRQDQQHPETWLSGKCPCPTCRAKFCI  352 (358)
T ss_pred             cchHHHHHHHHHhhhcCCCCChhhhhcCCCCCCCCccccee
Confidence            34569999998875             35699999998763

They are purported to be transmembrane protein-precursors but their function is unknown.

>PF05883 Baculo_RING: Baculovirus U-box/Ring-like domain; InterPro: IPR008573 This family consists of several Baculovirus proteins of around 130 residues in length

Probab=91.93  E-value=0.089  Score=41.79  Aligned_cols=33  Identities=27%  Similarity=0.627  Sum_probs=25.7

Q ss_pred             cCeeccccccccc--ce-ecCCC------CcchHHHHHHHhc
Q 026172          143 EEECGICLEICCK--IV-LPDCN------HSMCMRCYRNWRA  175 (242)
Q Consensus       143 ~~~C~ICl~~~~~--~v-~~~Cg------H~fC~~Ci~~w~~  175 (242)
                      ..+|.||++.+.+  ++ -.+||      |.||..|+.+|..
T Consensus        26 ~~EC~IC~~~I~~~~GvV~vt~~g~lnLEkmfc~~C~~rw~~   67 (134)
T PF05883_consen   26 TVECQICFDRIDNNDGVVYVTDGGTLNLEKMFCADCDKRWRR   67 (134)
T ss_pred             CeeehhhhhhhhcCCCEEEEecCCeehHHHHHHHHHHHHHHh
Confidence            5899999999886  43 23454      7899999999954

The function of this family is unknown, but it appears to be related to the U-box and ring finger domain by profile-profile comparison.

>KOG1952 consensus Transcription factor NF-X1, contains NFX-type Zn2+-binding and R3H domains [Transcription]

Probab=91.86  E-value=0.12  Score=52.02  Aligned_cols=47  Identities=28%  Similarity=0.686  Sum_probs=36.7

Q ss_pred             ccCeeccccccccc--c--eecCCCCcchHHHHHHHhc-------cCCCCcCcccccc
Q 026172          142 REEECGICLEICCK--I--VLPDCNHSMCMRCYRNWRA-------RSQSCPFCRDSLR  188 (242)
Q Consensus       142 ~~~~C~ICl~~~~~--~--v~~~CgH~fC~~Ci~~w~~-------~~~~CP~CR~~l~  188 (242)
                      +..+|.||.+.+..  +  ...+|-|+||..||+.|..       ....||.|.....
T Consensus       190 ~~yeCmIC~e~I~~t~~~WSC~sCYhVFHl~CI~~WArs~ek~~~~~WrCP~Cqsv~~  247 (950)
T KOG1952|consen  190 RKYECMICTERIKRTAPVWSCKSCYHVFHLNCIKKWARSSEKTGQDGWRCPACQSVSK  247 (950)
T ss_pred             CceEEEEeeeeccccCCceecchhhhhhhHHHHHHHHHHhhhccCccccCCcccchhc
Confidence            44799999999873  2  2346889999999999975       3578999985544

>KOG1940 consensus Zn-finger protein [General function prediction only]

Probab=91.59  E-value=0.11  Score=46.20  Aligned_cols=44  Identities=30%  Similarity=0.686  Sum_probs=36.3

Q ss_pred             ccCeecccccccc----cceecCCCCcchHHHHHHHhccCCCCcCccc
Q 026172          142 REEECGICLEICC----KIVLPDCNHSMCMRCYRNWRARSQSCPFCRD  185 (242)
Q Consensus       142 ~~~~C~ICl~~~~----~~v~~~CgH~fC~~Ci~~w~~~~~~CP~CR~  185 (242)
                      .+..||||.+.+.    .+..++|||..+..|++...-.+-+||+|-+
T Consensus       157 ~~~ncPic~e~l~~s~~~~~~~~CgH~~h~~cf~e~~~~~y~CP~C~~  204 (276)
T KOG1940|consen  157 SEFNCPICKEYLFLSFEDAGVLKCGHYMHSRCFEEMICEGYTCPICSK  204 (276)
T ss_pred             ccCCCchhHHHhccccccCCccCcccchHHHHHHHHhccCCCCCcccc
Confidence            3455999999765    4567899999999999998776699999977

>COG5175 MOT2 Transcriptional repressor [Transcription]

Probab=91.52  E-value=0.13  Score=46.81  Aligned_cols=49  Identities=29%  Similarity=0.653  Sum_probs=36.1

Q ss_pred             ccCeecccccccc--ccee--cCCCCcchHHHHHHHhc-cCCCCcCcccccccc
Q 026172          142 REEECGICLEICC--KIVL--PDCNHSMCMRCYRNWRA-RSQSCPFCRDSLRRV  190 (242)
Q Consensus       142 ~~~~C~ICl~~~~--~~v~--~~CgH~fC~~Ci~~w~~-~~~~CP~CR~~l~~~  190 (242)
                      ++.-|+.|++.+.  +...  -+||...|.-|+....+ -...||-||......
T Consensus        13 eed~cplcie~mditdknf~pc~cgy~ic~fc~~~irq~lngrcpacrr~y~de   66 (480)
T COG5175          13 EEDYCPLCIEPMDITDKNFFPCPCGYQICQFCYNNIRQNLNGRCPACRRKYDDE   66 (480)
T ss_pred             ccccCcccccccccccCCcccCCcccHHHHHHHHHHHhhccCCChHhhhhcccc
Confidence            3345999999866  3322  36899999999877655 467999999977643

>KOG0298 consensus DEAD box-containing helicase-like transcription factor/DNA repair protein [Replication, recombination and repair]

Probab=91.19  E-value=0.056  Score=56.50  Aligned_cols=45  Identities=33%  Similarity=0.794  Sum_probs=39.5

Q ss_pred             CccCeecccccccc-cceecCCCCcchHHHHHHHhccCCCCcCccc
Q 026172          141 EREEECGICLEICC-KIVLPDCNHSMCMRCYRNWRARSQSCPFCRD  185 (242)
Q Consensus       141 ~~~~~C~ICl~~~~-~~v~~~CgH~fC~~Ci~~w~~~~~~CP~CR~  185 (242)
                      .+...|.||.+.+. ......|||.+|..|...|...+..||.|..
T Consensus      1151 ~~~~~c~ic~dil~~~~~I~~cgh~~c~~c~~~~l~~~s~~~~~ks 1196 (1394)
T KOG0298|consen 1151 SGHFVCEICLDILRNQGGIAGCGHEPCCRCDELWLYASSRCPICKS 1196 (1394)
T ss_pred             hcccchHHHHHHHHhcCCeeeechhHhhhHHHHHHHHhccCcchhh
Confidence            34568999999988 5566779999999999999999999999974

>KOG4362 consensus Transcriptional regulator BRCA1 [Replication, recombination and repair; Transcription]

Probab=90.18  E-value=0.078  Score=52.45  Aligned_cols=47  Identities=26%  Similarity=0.596  Sum_probs=39.7

Q ss_pred             ccCeecccccccccceecCCCCcchHHHHHHHhc---cCCCCcCcccccc
Q 026172          142 REEECGICLEICCKIVLPDCNHSMCMRCYRNWRA---RSQSCPFCRDSLR  188 (242)
Q Consensus       142 ~~~~C~ICl~~~~~~v~~~CgH~fC~~Ci~~w~~---~~~~CP~CR~~l~  188 (242)
                      ...+|+||...+.+++.+.|-|.||..|+..-+.   ....||+|+..+.
T Consensus        20 k~lEc~ic~~~~~~p~~~kc~~~~l~~~~n~~f~~~~~~~~~~lc~~~~e   69 (684)
T KOG4362|consen   20 KILECPICLEHVKEPSLLKCDHIFLKFCLNKLFESKKGPKQCALCKSDIE   69 (684)
T ss_pred             hhccCCceeEEeeccchhhhhHHHHhhhhhceeeccCccccchhhhhhhh
Confidence            5589999999999999999999999999866443   4679999987654

>PF12906 RINGv: RING-variant domain; PDB: 2D8S_A 1VYX_A

Probab=89.88  E-value=0.17  Score=32.79  Aligned_cols=38  Identities=26%  Similarity=0.714  Sum_probs=24.2

Q ss_pred             eccccccccc--ceecCCCC-----cchHHHHHHHhc--cCCCCcCc
Q 026172          146 CGICLEICCK--IVLPDCNH-----SMCMRCYRNWRA--RSQSCPFC  183 (242)
Q Consensus       146 C~ICl~~~~~--~v~~~CgH-----~fC~~Ci~~w~~--~~~~CP~C  183 (242)
                      |-||++.-.+  +...||+-     ..|..|+.+|+.  +..+|++|
T Consensus         1 CrIC~~~~~~~~~li~pC~C~Gs~~~vH~~CL~~W~~~~~~~~C~~C   47 (47)
T PF12906_consen    1 CRICLEGEEEDEPLISPCRCKGSMKYVHRSCLERWIRESGNRKCEIC   47 (47)
T ss_dssp             ETTTTEE-SSSS-EE-SSS-SSCCGSEECCHHHHHHHHHT-SB-TTT
T ss_pred             CeEeCCcCCCCCceecccccCCCcchhHHHHHHHHHHhcCCCcCCCC
Confidence            6688876553  34566643     469999999998  67789887

>COG5220 TFB3 Cdk activating kinase (CAK)/RNA polymerase II transcription initiation/nucleotide excision repair factor TFIIH, subunit TFB3 [Cell division and chromosome partitioning / Transcription / DNA replication, recombination, and repair]

Probab=89.87  E-value=0.14  Score=44.52  Aligned_cols=47  Identities=28%  Similarity=0.680  Sum_probs=35.3

Q ss_pred             ccCeecccccccc-cc-----eecCCCCcchHHHHHHHhc-cCCCCc--Ccccccc
Q 026172          142 REEECGICLEICC-KI-----VLPDCNHSMCMRCYRNWRA-RSQSCP--FCRDSLR  188 (242)
Q Consensus       142 ~~~~C~ICl~~~~-~~-----v~~~CgH~fC~~Ci~~w~~-~~~~CP--~CR~~l~  188 (242)
                      .+..||||...-- .|     +.|.|-|.+|.+|+.+.++ +...||  -|..-+.
T Consensus         9 ~d~~CPvCksDrYLnPdik~linPECyHrmCESCvdRIFs~GpAqCP~~gC~kILR   64 (314)
T COG5220           9 EDRRCPVCKSDRYLNPDIKILINPECYHRMCESCVDRIFSRGPAQCPYKGCGKILR   64 (314)
T ss_pred             hcccCCccccccccCCCeEEEECHHHHHHHHHHHHHHHhcCCCCCCCCccHHHHHH
Confidence            4568999997532 22     3356999999999999877 577999  7866554

>KOG3161 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

Probab=89.06  E-value=0.18  Score=49.48  Aligned_cols=38  Identities=32%  Similarity=0.709  Sum_probs=30.6

Q ss_pred             ccCeecccccccc----cceecCCCCcchHHHHHHHhccCCCCc
Q 026172          142 REEECGICLEICC----KIVLPDCNHSMCMRCYRNWRARSQSCP  181 (242)
Q Consensus       142 ~~~~C~ICl~~~~----~~v~~~CgH~fC~~Ci~~w~~~~~~CP  181 (242)
                      +-..|+||+..|.    .|+.+-|||+.|..|++...  ..+||
T Consensus        10 ~~l~c~ic~n~f~~~~~~Pvsl~cghtic~~c~~~ly--n~scp   51 (861)
T KOG3161|consen   10 LLLLCDICLNLFVVQRLEPVSLQCGHTICGHCVQLLY--NASCP   51 (861)
T ss_pred             HHhhchHHHHHHHHHhcCcccccccchHHHHHHHhHh--hccCC
Confidence            4578999988776    57889999999999998754  45677

>KOG2817 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

Probab=89.01  E-value=0.25  Score=45.75  Aligned_cols=43  Identities=19%  Similarity=0.380  Sum_probs=34.0

Q ss_pred             Ceecccccccc---cceecCCCCcchHHHHHHHhcc---CCCCcCcccc
Q 026172          144 EECGICLEICC---KIVLPDCNHSMCMRCYRNWRAR---SQSCPFCRDS  186 (242)
Q Consensus       144 ~~C~ICl~~~~---~~v~~~CgH~fC~~Ci~~w~~~---~~~CP~CR~~  186 (242)
                      +.|||=.+.-.   .|+.+.|||+.+..-+.+...+   +..||.|-..
T Consensus       335 F~CPVlKeqtsdeNPPm~L~CGHVISkdAlnrLS~ng~~sfKCPYCP~e  383 (394)
T KOG2817|consen  335 FICPVLKEQTSDENPPMMLICGHVISKDALNRLSKNGSQSFKCPYCPVE  383 (394)
T ss_pred             eecccchhhccCCCCCeeeeccceecHHHHHHHhhCCCeeeeCCCCCcc
Confidence            68998766544   5788899999999999997662   4799999543

>KOG1815 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

Probab=87.07  E-value=0.47  Score=45.05  Aligned_cols=35  Identities=29%  Similarity=0.780  Sum_probs=30.7

Q ss_pred             CccCeeccccccccc-ceecCCCCcchHHHHHHHhc
Q 026172          141 EREEECGICLEICCK-IVLPDCNHSMCMRCYRNWRA  175 (242)
Q Consensus       141 ~~~~~C~ICl~~~~~-~v~~~CgH~fC~~Ci~~w~~  175 (242)
                      ....+|.||.+.... ...+.|||.||..|+..++.
T Consensus        68 ~~~~~c~ic~~~~~~~~~~~~c~H~~c~~cw~~yl~  103 (444)
T KOG1815|consen   68 KGDVQCGICVESYDGEIIGLGCGHPFCPPCWTGYLG  103 (444)
T ss_pred             CccccCCcccCCCcchhhhcCCCcHHHHHHHHHHhh
Confidence            456899999999985 67789999999999999876

>PF02891 zf-MIZ: MIZ/SP-RING zinc finger; InterPro: IPR004181 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule

Probab=85.94  E-value=0.48  Score=31.14  Aligned_cols=42  Identities=19%  Similarity=0.517  Sum_probs=20.5

Q ss_pred             Ceeccccccccccee-cCCCCcchHHHHHHHhc-----cCCCCcCcccc
Q 026172          144 EECGICLEICCKIVL-PDCNHSMCMRCYRNWRA-----RSQSCPFCRDS  186 (242)
Q Consensus       144 ~~C~ICl~~~~~~v~-~~CgH~fC~~Ci~~w~~-----~~~~CP~CR~~  186 (242)
                      +.|++....+..|+. ..|.|.-|.+= ..|+.     ....||+|.++
T Consensus         3 L~CPls~~~i~~P~Rg~~C~H~~CFDl-~~fl~~~~~~~~W~CPiC~~~   50 (50)
T PF02891_consen    3 LRCPLSFQRIRIPVRGKNCKHLQCFDL-ESFLESNQRTPKWKCPICNKP   50 (50)
T ss_dssp             SB-TTTSSB-SSEEEETT--SS--EEH-HHHHHHHHHS---B-TTT---
T ss_pred             eeCCCCCCEEEeCccCCcCcccceECH-HHHHHHhhccCCeECcCCcCc
Confidence            579999999998876 68999865322 23333     45789999764

Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents MIZ-type zinc finger domains. Miz1 (Msx-interacting-zinc finger) is a zinc finger-containing protein with homology to the yeast protein, Nfi-1. Miz1 is a sequence specific DNA binding protein that can function as a positive-acting transcription factor. Miz1 binds to the homeobox protein Msx2, enhancing the specific DNA-binding ability of Msx2 []. Other proteins containing this domain include the human pias family (protein inhibitor of activated STAT protein). More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0008270 zinc ion binding; PDB: 3I2D_A.

>PF14569 zf-UDP: Zinc-binding RING-finger; PDB: 1WEO_A

Probab=85.36  E-value=0.86  Score=32.79  Aligned_cols=53  Identities=23%  Similarity=0.638  Sum_probs=21.9

Q ss_pred             ccCeecccccccc-----cc--eecCCCCcchHHHHHH-HhccCCCCcCcccccccccCCC
Q 026172          142 REEECGICLEICC-----KI--VLPDCNHSMCMRCYRN-WRARSQSCPFCRDSLRRVNSGD  194 (242)
Q Consensus       142 ~~~~C~ICl~~~~-----~~--v~~~CgH~fC~~Ci~~-w~~~~~~CP~CR~~l~~~~~~~  194 (242)
                      ....|.||-+..-     ++  ..-.|+-..|..|++- ....++.||.|+.+.++..-..
T Consensus         8 ~~qiCqiCGD~VGl~~~Ge~FVAC~eC~fPvCr~CyEYErkeg~q~CpqCkt~ykr~kgsp   68 (80)
T PF14569_consen    8 NGQICQICGDDVGLTENGEVFVACHECAFPVCRPCYEYERKEGNQVCPQCKTRYKRHKGSP   68 (80)
T ss_dssp             SS-B-SSS--B--B-SSSSB--S-SSS-----HHHHHHHHHTS-SB-TTT--B----TT--
T ss_pred             CCcccccccCccccCCCCCEEEEEcccCCccchhHHHHHhhcCcccccccCCCcccccCCC
Confidence            3467999998765     22  2346788889999965 4458999999999887654443

>KOG1812 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

Probab=84.56  E-value=0.6  Score=43.60  Aligned_cols=34  Identities=32%  Similarity=0.746  Sum_probs=25.7

Q ss_pred             ccCeecccc-ccccc---ceecCCCCcchHHHHHHHhc
Q 026172          142 REEECGICL-EICCK---IVLPDCNHSMCMRCYRNWRA  175 (242)
Q Consensus       142 ~~~~C~ICl-~~~~~---~v~~~CgH~fC~~Ci~~w~~  175 (242)
                      ...+|.||. +....   .....|+|.||..|+.+..+
T Consensus       145 ~~~~C~iC~~e~~~~~~~f~~~~C~H~fC~~C~k~~ie  182 (384)
T KOG1812|consen  145 PKEECGICFVEDPEAEDMFSVLKCGHRFCKDCVKQHIE  182 (384)
T ss_pred             ccccCccCccccccHhhhHHHhcccchhhhHHhHHHhh
Confidence            467899999 44332   12467999999999998876

>KOG3899 consensus Uncharacterized conserved protein [Function unknown]

Probab=84.17  E-value=0.61  Score=41.74  Aligned_cols=28  Identities=29%  Similarity=0.696  Sum_probs=22.9

Q ss_pred             CCCcchHHHHHHHhc-------------cCCCCcCcccccc
Q 026172          161 CNHSMCMRCYRNWRA-------------RSQSCPFCRDSLR  188 (242)
Q Consensus       161 CgH~fC~~Ci~~w~~-------------~~~~CP~CR~~l~  188 (242)
                      |....|.+|+.+|+.             ++-+||.||+.+.
T Consensus       325 crp~wc~~cla~~f~~rq~~v~r~~~~~~~~~cp~cr~~fc  365 (381)
T KOG3899|consen  325 CRPLWCRSCLAQIFIGRQDNVYRYEYHRGSAQCPTCRKNFC  365 (381)
T ss_pred             cccHHHHHHHHHHHhhcccchhHHHHHhcCCCCcchhhceE
Confidence            456689999998875             4679999999876

>KOG0309 consensus Conserved WD40 repeat-containing protein [Function unknown]

Probab=83.19  E-value=0.74  Score=46.15  Aligned_cols=26  Identities=23%  Similarity=0.585  Sum_probs=23.2

Q ss_pred             eecCCCCcchHHHHHHHhccCCCCcC
Q 026172          157 VLPDCNHSMCMRCYRNWRARSQSCPF  182 (242)
Q Consensus       157 v~~~CgH~fC~~Ci~~w~~~~~~CP~  182 (242)
                      +...|+|..|..|...|++....||.
T Consensus      1044 ~Cg~C~Hv~H~sc~~eWf~~gd~Cps 1069 (1081)
T KOG0309|consen 1044 FCGTCGHVGHTSCMMEWFRTGDVCPS 1069 (1081)
T ss_pred             hhccccccccHHHHHHHHhcCCcCCC
Confidence            45689999999999999998888885

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	242
4epo_C	149	E3 ubiquitin-protein ligase RNF8; coiled-coil, E3	2e-21
2ecn_A	70	Ring finger protein 141; RNF141, ring domain, zinc	1e-17
2y1n_A	389	E3 ubiquitin-protein ligase; ligase-transferase co	3e-11
3fl2_A	124	E3 ubiquitin-protein ligase UHRF1; cell cycle, DNA	1e-10
2d8t_A	71	Dactylidin, ring finger protein 146; RNF146, ring	3e-09
1z6u_A	150	NP95-like ring finger protein isoform B; structura	1e-08
2djb_A	72	Polycomb group ring finger protein 6; PCGF6, ring	4e-08
3lrq_A	100	E3 ubiquitin-protein ligase TRIM37; structural gen	5e-08
2y43_A	99	E3 ubiquitin-protein ligase RAD18; DNA repair, met	8e-08
3l11_A	115	E3 ubiquitin-protein ligase RNF168; E3 ligase, rin	1e-07
2ckl_A	108	Polycomb group ring finger protein 4; BMI1, RING1B	1e-07
2ecm_A	55	Ring finger and CHY zinc finger domain- containing	1e-07
2ecy_A	66	TNF receptor-associated factor 3; metal binding pr	2e-07
1chc_A	68	Equine herpes virus-1 ring domain; viral protein;	4e-07
2csy_A	81	Zinc finger protein 183-like 1; ring finger protei	5e-07
2ct0_A	74	Non-SMC element 1 homolog; ring domain, structural	6e-07
2ea6_A	69	Ring finger protein 4; RNF4, RES4-26, ring domain,	8e-07
3ng2_A	71	RNF4, snurf, ring finger protein 4; ring domain, E	1e-06
2vje_A	64	E3 ubiquitin-protein ligase MDM2; proto-oncogene,	3e-06
1jm7_B	117	BARD1, BRCA1-associated ring domain protein 1; rin	3e-06
2ecw_A	85	Tripartite motif-containing protein 30; metal bind	4e-06
2vje_B	63	MDM4 protein; proto-oncogene, phosphorylation, alt	5e-06
2yur_A	74	Retinoblastoma-binding protein 6; P53-associated c	6e-06
3knv_A	141	TNF receptor-associated factor 2; cross-brace, alt	8e-06
2ysl_A	73	Tripartite motif-containing protein 31; ring-type	1e-05
2xeu_A	64	Ring finger protein 4; transcription, zinc-finger,	1e-05
1jm7_A	112	BRCA1, breast cancer type 1 susceptibility protein	1e-05
2ecl_A	81	Ring-box protein 2; RNF7, ring domian, zinc-bindin	1e-05
2ckl_B	165	Ubiquitin ligase protein RING2; BMI1, RING1B, poly	2e-05
3ztg_A	92	E3 ubiquitin-protein ligase RBBP6; PACT, U-BOX, mR	2e-05
3hct_A	118	TNF receptor-associated factor 6; cross-brace, bet	2e-05
2ct2_A	88	Tripartite motif protein 32; zinc-finger protein H	3e-05
1rmd_A	116	RAG1; V(D)J recombination, antibody, MAD, ring fin	4e-05
2egp_A	79	Tripartite motif-containing protein 34; ZF-C3HC4 d	7e-05
2ecv_A	85	Tripartite motif-containing protein 5; metal bindi	8e-05
2ecj_A	58	Tripartite motif-containing protein 39; TRIM39, ri	8e-05
1bor_A	56	Transcription factor PML; proto-oncogene, nuclear	9e-05
2ysj_A	63	Tripartite motif-containing protein 31; ring-type	1e-04
3hcs_A	170	TNF receptor-associated factor 6; cross-brace, bet	2e-04
1v87_A	114	Deltex protein 2; ring-H2 domain, zinc-binding dom	2e-04
1e4u_A	78	Transcriptional repressor NOT4; gene regulation, t	3e-04
2ect_A	78	Ring finger protein 126; metal binding protein, st	5e-04
2ep4_A	74	Ring finger protein 24; zinc binding, ubiquitin, E	6e-04
4ap4_A	133	E3 ubiquitin ligase RNF4; ligase-signalling protei	6e-04
1g25_A	65	CDK-activating kinase assembly factor MAT1; ring f	8e-04

>4epo_C E3 ubiquitin-protein ligase RNF8; coiled-coil, E3 ubiquitin ligase, protein binding complex; 4.80A {Homo sapiens} Length = 149

 Score = 85.9 bits (212), Expect = 2e-21
 Identities = 33/146 (22%), Positives = 54/146 (36%), Gaps = 20/146 (13%)

Query: 83  TRERKASIKEFYGVIFPSLLQLQRGITDVEDKKQKEICDAKYKKKGRMDKGKLSEIDIER 142
             E   S K+F  +I     +L          +Q +    K + +       +++  +E 
Sbjct: 15  MEELNRSKKDFEAIIQAKNKEL----------EQTKEEKEKMQAQKEEVLSHMND-VLEN 63

Query: 143 EEECGICLEICCKIVLPDCNHSMCMRCYRNWRARSQSCPFCRDSLRRVNSGDLWIYTSED 202
           E +C IC E   + V  +C HS C  C   W  R   CP CR  ++      +       
Sbjct: 64  ELQCIICSEYFIEAVTLNCAHSFCSYCINEWMKRKIECPICRKDIKSKTYSLVLDNCINK 123

Query: 203 DIVDLASISRE---------NLKRLF 219
            + +L+S  +E           KRLF
Sbjct: 124 MVNNLSSEVKERRIVLIRERKAKRLF 149

>2ecn_A Ring finger protein 141; RNF141, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 70

 Score = 74.0 bits (182), Expect = 1e-17
 Identities = 20/54 (37%), Positives = 29/54 (53%), Gaps = 1/54 (1%)

Query: 139 DIEREEECGICLEICCKIVLPDCNHSMCMRCYRNWRARSQSCPFCRDSLRRVNS 192
            +  EEEC IC++    ++LP C HS C +C   W  R ++CP CR  +   N 
Sbjct: 11  QLTDEEECCICMDGRADLILP-CAHSFCQKCIDKWSDRHRNCPICRLQMTGANE 63

>2y1n_A E3 ubiquitin-protein ligase; ligase-transferase complex, ubiquitin ring E3 ligase; HET: PTR; 2.00A {Homo sapiens} PDB: 2y1m_A* 4a4c_A* 4a4b_A* 1fbv_A* 3vgo_A 4a49_A* 2k4d_A 2ldr_A* Length = 389

 Score = 61.7 bits (149), Expect = 3e-11
 Identities = 18/69 (26%), Positives = 28/69 (40%), Gaps = 1/69 (1%)

Query: 125 KKKGRMDKGKLSEIDIEREEECGICLEICCKIVLPDCNHSMCMRCYRNW-RARSQSCPFC 183
             K   ++ +L        + C IC E    + +  C H MC  C  +W  +  Q CPFC
Sbjct: 314 HIKVTQEQYELYCEMGSTFQLCKICAENDKDVKIEPCGHLMCTSCLTSWQESEGQGCPFC 373

Query: 184 RDSLRRVNS 192
           R  ++    
Sbjct: 374 RCEIKGTEP 382

>3fl2_A E3 ubiquitin-protein ligase UHRF1; cell cycle, DNA damage, DNA repair, ring finger domain, metal binding, DNA replication; 1.75A {Homo sapiens} Length = 124

 Score = 56.5 bits (136), Expect = 1e-10
 Identities = 22/82 (26%), Positives = 34/82 (41%), Gaps = 2/82 (2%)

Query: 110 DVEDKKQKEICDAKYKKKGRMDKGKLSEIDIEREE-ECGICLEICCKIVLPDCNHSMCMR 168
           D  + K      A  K +          +    E  +C  C E+  + +   C H++C  
Sbjct: 18  DKSNAKLWNEVLASLKDRPASGSPFQLFLSKVEETFQCICCQELVFRPITTVCQHNVCKD 77

Query: 169 C-YRNWRARSQSCPFCRDSLRR 189
           C  R++RA+  SCP CR  L R
Sbjct: 78  CLDRSFRAQVFSCPACRYDLGR 99

>2d8t_A Dactylidin, ring finger protein 146; RNF146, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 71

 Score = 51.4 bits (123), Expect = 3e-09
 Identities = 14/52 (26%), Positives = 19/52 (36%)

Query: 136 SEIDIEREEECGICLEICCKIVLPDCNHSMCMRCYRNWRARSQSCPFCRDSL 187
           +        EC ICL+ C   V   C H  C  C +      + C  CR  +
Sbjct: 8   NTAPSLTVPECAICLQTCVHPVSLPCKHVFCYLCVKGASWLGKRCALCRQEI 59

>1z6u_A NP95-like ring finger protein isoform B; structural genomics consortium, ligase, ubiquitin-protein ligase, cell cycle regulation, SGC; 2.10A {Homo sapiens} Length = 150

 Score = 51.5 bits (123), Expect = 1e-08
 Identities = 21/79 (26%), Positives = 40/79 (50%), Gaps = 4/79 (5%)

Query: 112 EDKKQKEICDAKYKKKGRMDKGKLSEIDIEREEECGICLEICCKIVLPDCNHSMCMRC-Y 170
           ED + +++ D   +    + +G      +E+   C  C E+  + V  +C H++C  C  
Sbjct: 50  EDCQNQKLWD---EVLSHLVEGPNFLKKLEQSFMCVCCQELVYQPVTTECFHNVCKDCLQ 106

Query: 171 RNWRARSQSCPFCRDSLRR 189
           R+++A+  SCP CR  L +
Sbjct: 107 RSFKAQVFSCPACRHDLGQ 125

>2djb_A Polycomb group ring finger protein 6; PCGF6, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 72

 Score = 48.2 bits (115), Expect = 4e-08
 Identities = 11/55 (20%), Positives = 18/55 (32%), Gaps = 1/55 (1%)

Query: 139 DIEREEECGICLEICCK-IVLPDCNHSMCMRCYRNWRARSQSCPFCRDSLRRVNS 192
           ++     C IC         + +C H+ C  C       S  CP C   + +   
Sbjct: 11  ELTPYILCSICKGYLIDATTITECLHTFCKSCIVRHFYYSNRCPKCNIVVHQTQP 65

>3lrq_A E3 ubiquitin-protein ligase TRIM37; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; HET: MSE; 2.29A {Homo sapiens} Length = 100

 Score = 48.7 bits (116), Expect = 5e-08
 Identities = 18/62 (29%), Positives = 25/62 (40%), Gaps = 4/62 (6%)

Query: 129 RMDKGKLSEIDIEREEECGICLEICCK-IVLPDCNHSMCMRCYRNW-RARSQSCPFCRDS 186
            MD+  +  I       C IC+E      + P C+   C  C R W   +   CP CR  
Sbjct: 10  HMDEQSVESIA--EVFRCFICMEKLRDARLCPHCSKLCCFSCIRRWLTEQRAQCPHCRAP 67

Query: 187 LR 188
           L+
Sbjct: 68  LQ 69

>2y43_A E3 ubiquitin-protein ligase RAD18; DNA repair, metal-binding, translesion synthesis, UB conjugation pathway; 1.80A {Homo sapiens} Length = 99

 Score = 47.8 bits (114), Expect = 8e-08
 Identities = 15/54 (27%), Positives = 26/54 (48%), Gaps = 1/54 (1%)

Query: 139 DIEREEECGICLEICCK-IVLPDCNHSMCMRCYRNWRARSQSCPFCRDSLRRVN 191
            I+    CGIC E     +++P C+H+ C  C R + +    CP C  ++   +
Sbjct: 18  TIDDLLRCGICFEYFNIAMIIPQCSHNYCSLCIRKFLSYKTQCPTCCVTVTEPD 71

>3l11_A E3 ubiquitin-protein ligase RNF168; E3 ligase, ring domain, DNA damage, chromatin regulator, chromosomal protein, DNA repair, metal-binding; 2.12A {Homo sapiens} Length = 115

 Score = 48.0 bits (114), Expect = 1e-07
 Identities = 20/54 (37%), Positives = 26/54 (48%), Gaps = 1/54 (1%)

Query: 136 SEIDIEREEECGICLEICCKIVLPDCNHSMCMRC-YRNWRARSQSCPFCRDSLR 188
             I    E +CGIC+EI  + V   CNH++C  C        S  CPFCR  + 
Sbjct: 8   DAIPSLSECQCGICMEILVEPVTLPCNHTLCKPCFQSTVEKASLCCPFCRRRVS 61

>2ckl_A Polycomb group ring finger protein 4; BMI1, RING1B, polycomb, E3-ligase, nuclear protein, chromosomal protein, transcription regulation; 2.0A {Mus musculus} PDB: 3rpg_B 2h0d_A Length = 108

 Score = 47.5 bits (113), Expect = 1e-07
 Identities = 11/55 (20%), Positives = 20/55 (36%), Gaps = 1/55 (1%)

Query: 139 DIEREEECGICLEICCKIV-LPDCNHSMCMRCYRNWRARSQSCPFCRDSLRRVNS 192
           ++     C +C         + +C HS C  C   +   S+ CP C   + +   
Sbjct: 11  ELNPHLMCVLCGGYFIDATTIIECLHSFCKTCIVRYLETSKYCPICDVQVHKTRP 65

>2ecm_A Ring finger and CHY zinc finger domain- containing protein 1; RCHY1, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Mus musculus} PDB: 2jrj_A Length = 55

 Score = 46.1 bits (110), Expect = 1e-07
 Identities = 12/49 (24%), Positives = 14/49 (28%), Gaps = 4/49 (8%)

Query: 143 EEECGICLEI----CCKIVLPDCNHSMCMRCYRNWRARSQSCPFCRDSL 187
              C ICLE          +  C H +   CY         CP C    
Sbjct: 5   SSGCPICLEDIHTSRVVAHVLPCGHLLHRTCYEEMLKEGYRCPLCSGPS 53

>2ecy_A TNF receptor-associated factor 3; metal binding protein, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 66

 Score = 46.3 bits (110), Expect = 2e-07
 Identities = 12/52 (23%), Positives = 22/52 (42%), Gaps = 1/52 (1%)

Query: 139 DIEREEECGICLEICCKIVLPDCNHSMCMRCYRNW-RARSQSCPFCRDSLRR 189
            +E + +C  C  + C     +C H  C  C      + S  C  C++S+ +
Sbjct: 11  TVEDKYKCEKCHLVLCSPKQTECGHRFCESCMAALLSSSSPKCTACQESIVK 62

>1chc_A Equine herpes virus-1 ring domain; viral protein; NMR {Equid herpesvirus 1} SCOP: g.44.1.1 Length = 68

 Score = 45.1 bits (107), Expect = 4e-07
 Identities = 15/51 (29%), Positives = 22/51 (43%), Gaps = 1/51 (1%)

Query: 141 EREEECGICLE-ICCKIVLPDCNHSMCMRCYRNWRARSQSCPFCRDSLRRV 190
              E C ICLE      +   C H+ C  C   W  ++ +CP C+  +  V
Sbjct: 3   TVAERCPICLEDPSNYSMALPCLHAFCYVCITRWIRQNPTCPLCKVPVESV 53

>2csy_A Zinc finger protein 183-like 1; ring finger protein 161, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 81

 Score = 45.2 bits (107), Expect = 5e-07
 Identities = 10/40 (25%), Positives = 13/40 (32%)

Query: 145 ECGICLEICCKIVLPDCNHSMCMRCYRNWRARSQSCPFCR 184
            C IC +     V+  C H  C  C       +  C  C 
Sbjct: 17  RCFICRQAFQNPVVTKCRHYFCESCALEHFRATPRCYICD 56

>2ct0_A Non-SMC element 1 homolog; ring domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 74

 Score = 44.9 bits (106), Expect = 6e-07
 Identities = 10/50 (20%), Positives = 17/50 (34%), Gaps = 3/50 (6%)

Query: 141 EREEECGICLEICCK-IVLPDCNHSMCMRCYRNWRARSQS--CPFCRDSL 187
           +  + C IC  +  +      C   M + C   +   +    CP C D  
Sbjct: 13  DAVKICNICHSLLIQGQSCETCGIRMHLPCVAKYFQSNAEPRCPHCNDYW 62

>2ea6_A Ring finger protein 4; RNF4, RES4-26, ring domain, zinc- binding domain, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 69

 Score = 44.5 bits (105), Expect = 8e-07
 Identities = 14/59 (23%), Positives = 24/59 (40%), Gaps = 7/59 (11%)

Query: 136 SEIDIEREEECGICLE-------ICCKIVLPDCNHSMCMRCYRNWRARSQSCPFCRDSL 187
           + +       C IC++           IV  +C H  C +C R+    + +CP CR  +
Sbjct: 8   TGLRPSGTVSCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLKNANTCPTCRKKI 66

>3ng2_A RNF4, snurf, ring finger protein 4; ring domain, E3 ligase, ubiquitylation, sumoylation, zinc-FI metal binding protein; 1.80A {Rattus norvegicus} Length = 71

 Score = 44.1 bits (104), Expect = 1e-06
 Identities = 14/61 (22%), Positives = 24/61 (39%), Gaps = 7/61 (11%)

Query: 136 SEIDIEREEECGICLEICCKIVLPD-------CNHSMCMRCYRNWRARSQSCPFCRDSLR 188
           + +       C IC++   +IV          C H  C +C R+    + +CP CR  + 
Sbjct: 3   TGLRPSGTVSCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLKNANTCPTCRKKIN 62

Query: 189 R 189
            
Sbjct: 63  H 63

>2vje_A E3 ubiquitin-protein ligase MDM2; proto-oncogene, phosphorylation, alternative splicing, HOST-virus interaction, UBL conjugation pathway, zinc-finger, polymorphism; HET: FLC; 2.20A {Homo sapiens} PDB: 2vjf_A* 2hdp_A Length = 64

 Score = 42.9 bits (101), Expect = 3e-06
 Identities = 15/58 (25%), Positives = 24/58 (41%), Gaps = 3/58 (5%)

Query: 136 SEIDIEREEECGICLE--ICCKIVLPDCNHS-MCMRCYRNWRARSQSCPFCRDSLRRV 190
           S + +   E C IC        IV     H   C  C +  + R++ CP CR  ++ +
Sbjct: 1   SSLPLNAIEPCVICQGRPKNGCIVHGKTGHLMACFTCAKKLKKRNKPCPVCRQPIQMI 58

>1jm7_B BARD1, BRCA1-associated ring domain protein 1; ring finger, zinc-binding protein, heterodimer, ubiquitin ligase, antitumor; NMR {Homo sapiens} SCOP: g.44.1.1 Length = 117

 Score = 44.1 bits (104), Expect = 3e-06
 Identities = 21/80 (26%), Positives = 27/80 (33%), Gaps = 6/80 (7%)

Query: 139 DIEREEECGICLEICCKIV-LPDCNHSMCMRCYRNWRARSQSCPFCRDSLRRVNSGDLWI 197
            +E+   C  C  I  + V L  C H  C  C  +       CP C          DL I
Sbjct: 18  RLEKLLRCSRCTNILREPVCLGGCEHIFCSNCVSDC--IGTGCPVCYTPAWI---QDLKI 72

Query: 198 YTSEDDIVDLASISRENLKR 217
               D ++ L S  R  L  
Sbjct: 73  NRQLDSMIQLCSKLRNLLHD 92

>2ecw_A Tripartite motif-containing protein 30; metal binding protein, structural genomics, NPPSFA; NMR {Mus musculus} Length = 85

 Score = 42.7 bits (101), Expect = 4e-06
 Identities = 20/57 (35%), Positives = 26/57 (45%), Gaps = 6/57 (10%)

Query: 139 DIEREEECGICLEICCKIVLPDCNHSMCMRC-YRNWRARSQ-----SCPFCRDSLRR 189
            I+ E  C ICLE+  + V  DCNHS C  C   N+ +        +CP CR     
Sbjct: 15  MIKEEVTCPICLELLKEPVSADCNHSFCRACITLNYESNRNTDGKGNCPVCRVPYPF 71

>2vje_B MDM4 protein; proto-oncogene, phosphorylation, alternative splicing, HOST-virus interaction, UBL conjugation pathway, zinc-finger, polymorphism; HET: FLC; 2.20A {Homo sapiens} PDB: 2vjf_B* Length = 63

 Score = 42.1 bits (99), Expect = 5e-06
 Identities = 12/53 (22%), Positives = 20/53 (37%), Gaps = 3/53 (5%)

Query: 141 EREEECGICLE--ICCKIVLPDCNHS-MCMRCYRNWRARSQSCPFCRDSLRRV 190
              + C +C +      I+     H   C  C R  +    SCP C+  ++ V
Sbjct: 5   NLLKPCSLCEKRPRDGNIIHGRTGHLVTCFHCARRLKKAGASCPICKKEIQLV 57

>2yur_A Retinoblastoma-binding protein 6; P53-associated cellular protein of testis, proliferation potential-related protein, protein P2P-R; NMR {Homo sapiens} Length = 74

 Score = 42.0 bits (99), Expect = 6e-06
 Identities = 17/49 (34%), Positives = 22/49 (44%), Gaps = 3/49 (6%)

Query: 139 DIEREEECGICLEICCK-IVLPDCNHSMCMRCYRNWRARSQ--SCPFCR 184
            I  E  C IC +I    +V+P C +S C  C R     S   +CP C 
Sbjct: 11  PIPDELLCLICKDIMTDAVVIPCCGNSYCDECIRTALLESDEHTCPTCH 59

>3knv_A TNF receptor-associated factor 2; cross-brace, alternative splicing, apoptosis, cytoplasm, metal-binding, UBL conjugation, zinc, zinc-finger; 1.90A {Homo sapiens} Length = 141

 Score = 43.6 bits (102), Expect = 8e-06
 Identities = 11/55 (20%), Positives = 18/55 (32%), Gaps = 1/55 (1%)

Query: 134 KLSEIDIEREEECGICLEICCKIVLPDCNHSMCMRCYRNW-RARSQSCPFCRDSL 187
            L    +E +  C  C  +  +     C H  C  C  +   +  Q+C  C    
Sbjct: 22  TLLGTKLEAKYLCSACRNVLRRPFQAQCGHRYCSFCLASILSSGPQNCAACVHEG 76

>2ysl_A Tripartite motif-containing protein 31; ring-type zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 73

 Score = 41.6 bits (98), Expect = 1e-05
 Identities = 18/54 (33%), Positives = 28/54 (51%), Gaps = 3/54 (5%)

Query: 139 DIEREEECGICLEICCKIVLPDCNHSMCMRC-YRNWRARSQ--SCPFCRDSLRR 189
            ++ E  C ICL+I  K V  DC H+ C++C  +          CP C+ S+R+
Sbjct: 16  KLQEEVICPICLDILQKPVTIDCGHNFCLKCITQIGETSCGFFKCPLCKTSVRK 69

>2xeu_A Ring finger protein 4; transcription, zinc-finger, metal-binding; HET: SUC; 1.50A {Homo sapiens} Length = 64

 Score = 40.9 bits (96), Expect = 1e-05
 Identities = 14/52 (26%), Positives = 22/52 (42%), Gaps = 7/52 (13%)

Query: 145 ECGICLEICCKIVLPD-------CNHSMCMRCYRNWRARSQSCPFCRDSLRR 189
            C IC++   +IV          C H  C +C R+    + +CP CR  +  
Sbjct: 5   SCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLKNANTCPTCRKKINH 56

>1jm7_A BRCA1, breast cancer type 1 susceptibility protein; ring finger, zinc-binding protein, heterodimer, ubiquitin ligase, antitumor; NMR {Homo sapiens} SCOP: g.44.1.1 Length = 112

 Score = 42.4 bits (100), Expect = 1e-05
 Identities = 14/54 (25%), Positives = 26/54 (48%), Gaps = 3/54 (5%)

Query: 139 DIEREEECGICLEICCKIVLPDCNHSMCMRC-YRNWRARSQ--SCPFCRDSLRR 189
            +++  EC ICLE+  + V   C+H  C  C  +    +     CP C++ + +
Sbjct: 17  AMQKILECPICLELIKEPVSTKCDHIFCKFCMLKLLNQKKGPSQCPLCKNDITK 70

>2ecl_A Ring-box protein 2; RNF7, ring domian, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 81

 Score = 41.4 bits (97), Expect = 1e-05
 Identities = 13/46 (28%), Positives = 19/46 (41%), Gaps = 4/46 (8%)

Query: 143 EEECGICLEIC----CKIVLPDCNHSMCMRCYRNWRARSQSCPFCR 184
            + C  C        C +V  +CNHS    C   W  ++  CP C+
Sbjct: 26  MDACLRCQAENKQEDCVVVWGECNHSFHNCCMSLWVKQNNRCPLCQ 71

>2ckl_B Ubiquitin ligase protein RING2; BMI1, RING1B, polycomb, E3-ligase, nuclear protein, chromosomal protein, transcription regulation; 2.0A {Mus musculus} PDB: 3rpg_C 2h0d_B Length = 165

 Score = 43.0 bits (101), Expect = 2e-05
 Identities = 16/56 (28%), Positives = 24/56 (42%), Gaps = 2/56 (3%)

Query: 139 DIEREEECGICLEICCKIV-LPDCNHSMCMRC-YRNWRARSQSCPFCRDSLRRVNS 192
            +  E  C ICL++    +   +C H  C  C     R+ ++ CP CR  L    S
Sbjct: 50  SLHSELMCPICLDMLKNTMTTKECLHRFCADCIITALRSGNKECPTCRKKLVSKRS 105

>3ztg_A E3 ubiquitin-protein ligase RBBP6; PACT, U-BOX, mRNA processing, mRNA splicing; NMR {Homo sapiens} Length = 92

 Score = 41.3 bits (97), Expect = 2e-05
 Identities = 17/52 (32%), Positives = 23/52 (44%), Gaps = 3/52 (5%)

Query: 136 SEIDIEREEECGICLEICCK-IVLPDCNHSMCMRCYRNWRARSQ--SCPFCR 184
            +  I  E  C IC +I    +V+P C +S C  C R     S   +CP C 
Sbjct: 6   EDDPIPDELLCLICKDIMTDAVVIPCCGNSYCDECIRTALLESDEHTCPTCH 57

>3hct_A TNF receptor-associated factor 6; cross-brace, beta-BETA-alpha, coiled coil, cytoplasm, metal- binding, UBL conjugation, UBL conjugation pathway; 2.10A {Homo sapiens} PDB: 3hcu_A 2eci_A 2jmd_A Length = 118

 Score = 41.7 bits (98), Expect = 2e-05
 Identities = 15/50 (30%), Positives = 19/50 (38%), Gaps = 1/50 (2%)

Query: 139 DIEREEECGICLEICCKIVLPDCNHSMCMRCYRNW-RARSQSCPFCRDSL 187
            +E + EC ICL    + V   C H  C  C     R     CP   + L
Sbjct: 14  PLESKYECPICLMALREAVQTPCGHRFCKACIIKSIRDAGHKCPVDNEIL 63

>2ct2_A Tripartite motif protein 32; zinc-finger protein HT2A, TAT- interacting protein, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 88

 Score = 40.8 bits (96), Expect = 3e-05
 Identities = 19/58 (32%), Positives = 25/58 (43%), Gaps = 10/58 (17%)

Query: 136 SEIDIEREE-ECGICLE-----ICCKIVLPDCNHSMCMRCYRNWRARSQ---SCPFCR 184
             +D  RE  EC IC+E          +L  C H++C +C     A S     CPFC 
Sbjct: 7   GNLDALREVLECPICMESFTEEQLRPKLLH-CGHTICRQCLEKLLASSINGVRCPFCS 63

>1rmd_A RAG1; V(D)J recombination, antibody, MAD, ring finger, zinc binuclear cluster, zinc finger, DNA-binding protein; 2.10A {Mus musculus} SCOP: g.37.1.1 g.44.1.1 Length = 116

 Score = 41.1 bits (96), Expect = 4e-05
 Identities = 14/51 (27%), Positives = 16/51 (31%), Gaps = 1/51 (1%)

Query: 139 DIEREEECGICLEICCKIVLPDCNHSMCMRC-YRNWRARSQSCPFCRDSLR 188
              +   C IC  I    V   C H  C  C  R  +     CP CR    
Sbjct: 19  HFVKSISCQICEHILADPVETSCKHLFCRICILRCLKVMGSYCPSCRYPCF 69

>2egp_A Tripartite motif-containing protein 34; ZF-C3HC4 domain, tripartite motif protein 34, interferon- responsive finger protein 1; NMR {Homo sapiens} Length = 79

 Score = 39.2 bits (92), Expect = 7e-05
 Identities = 17/58 (29%), Positives = 26/58 (44%), Gaps = 7/58 (12%)

Query: 139 DIEREEECGICLEICCKIVLPDCNHSMCMRC-YRNWRARSQ------SCPFCRDSLRR 189
           +++ E  C ICLE+  + +  DC HS+C  C   + +          SCP C  S   
Sbjct: 8   NVQEEVTCPICLELLTEPLSLDCGHSLCRACITVSNKEAVTSMGGKSSCPVCGISYSF 65

>2ecv_A Tripartite motif-containing protein 5; metal binding protein, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 85

 Score = 39.2 bits (92), Expect = 8e-05
 Identities = 19/57 (33%), Positives = 27/57 (47%), Gaps = 6/57 (10%)

Query: 139 DIEREEECGICLEICCKIVLPDCNHSMCMRC-YRNWRARSQ-----SCPFCRDSLRR 189
           +++ E  C ICLE+  + +  DC HS C  C   N +         SCP CR S + 
Sbjct: 15  NVKEEVTCPICLELLTQPLSLDCGHSFCQACLTANHKKSMLDKGESSCPVCRISYQP 71

>2ecj_A Tripartite motif-containing protein 39; TRIM39, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 58

 Score = 38.5 bits (90), Expect = 8e-05
 Identities = 16/48 (33%), Positives = 24/48 (50%), Gaps = 3/48 (6%)

Query: 139 DIEREEECGICLEICCKIVLPDCNHSMCMRC-YRNWRA--RSQSCPFC 183
           +++ E  C +CLE   + V+ +C H+ C  C  R W    R   CP C
Sbjct: 11  NLQVEASCSVCLEYLKEPVIIECGHNFCKACITRWWEDLERDFPCPVC 58

>1bor_A Transcription factor PML; proto-oncogene, nuclear bodies (PODS), leukemia, transcription regulation; NMR {Homo sapiens} SCOP: g.44.1.1 Length = 56

 Score = 38.5 bits (90), Expect = 9e-05
 Identities = 11/40 (27%), Positives = 14/40 (35%), Gaps = 3/40 (7%)

Query: 145 ECGICLEICCKIVLPDCNHSMCMRCYRNWRARSQSCPFCR 184
            C  C        L  C H++C  C     A    CP C+
Sbjct: 8   RCQQCQAEAKCPKLLPCLHTLCSGCL---EASGMQCPICQ 44

>2ysj_A Tripartite motif-containing protein 31; ring-type zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 63

 Score = 38.5 bits (90), Expect = 1e-04
 Identities = 16/48 (33%), Positives = 23/48 (47%), Gaps = 3/48 (6%)

Query: 139 DIEREEECGICLEICCKIVLPDCNHSMCMRC-YRNWRARSQ--SCPFC 183
            ++ E  C ICL+I  K V  DC H+ C++C  +          CP C
Sbjct: 16  KLQEEVICPICLDILQKPVTIDCGHNFCLKCITQIGETSCGFFKCPLC 63

>3hcs_A TNF receptor-associated factor 6; cross-brace, beta-BETA-alpha, coiled coil, cytoplasm, metal- binding, UBL conjugation, UBL conjugation pathway; 2.20A {Homo sapiens} Length = 170

 Score = 40.1 bits (93), Expect = 2e-04
 Identities = 15/50 (30%), Positives = 19/50 (38%), Gaps = 1/50 (2%)

Query: 139 DIEREEECGICLEICCKIVLPDCNHSMCMRCYRNW-RARSQSCPFCRDSL 187
            +E + EC ICL    + V   C H  C  C     R     CP   + L
Sbjct: 14  PLESKYECPICLMALREAVQTPCGHRFCKACIIKSIRDAGHKCPVDNEIL 63

>1v87_A Deltex protein 2; ring-H2 domain, zinc-binding domain, notch signaling, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: g.44.1.1 Length = 114

 Score = 39.1 bits (90), Expect = 2e-04
 Identities = 14/73 (19%), Positives = 22/73 (30%), Gaps = 23/73 (31%)

Query: 135 LSEIDIEREEECGICLE------------------ICCKIVLPDCNHSMCMRCYRNWRAR 176
             E+ +  EE+C IC+E                        L  C+H+  + C       
Sbjct: 17  TEELKVAPEEDCIICMEKLAVASGYSDMTDSKALGPMVVGRLTKCSHAFHLLCLLAMYCN 76

Query: 177 SQ-----SCPFCR 184
                   CP C+
Sbjct: 77  GNKDGSLQCPSCK 89

>1e4u_A Transcriptional repressor NOT4; gene regulation, transcriptional control; NMR {Homo sapiens} SCOP: g.44.1.1 PDB: 1ur6_B Length = 78

 Score = 37.4 bits (86), Expect = 3e-04
 Identities = 18/83 (21%), Positives = 29/83 (34%), Gaps = 18/83 (21%)

Query: 141 EREEECGICLEIC----CKIVLPDCNHSMCMRCYRNWRA-RSQSCPFCRDSLRRVNSGDL 195
           E   EC +C+E             C + +C  C+   R   +  CP CR           
Sbjct: 9   EDPVECPLCMEPLEIDDINFFPCTCGYQICRFCWHRIRTDENGLCPACRKPY-------- 60

Query: 196 WIYTSEDDIVDLASISRENLKRL 218
                 +D      +S+E L+R+
Sbjct: 61  -----PEDPAVYKPLSQEELQRI 78

>2ect_A Ring finger protein 126; metal binding protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} Length = 78

 Score = 36.6 bits (85), Expect = 5e-04
 Identities = 19/56 (33%), Positives = 25/56 (44%), Gaps = 5/56 (8%)

Query: 136 SEIDIEREEECGICLE---ICCKI-VLPDCNHSMCMRCYRNWRARSQSCPFCRDSL 187
           +E  +    EC +C E   +   +  LP CNH     C   W  +  SCP CR SL
Sbjct: 8   TEEHVGSGLECPVCKEDYALGESVRQLP-CNHLFHDSCIVPWLEQHDSCPVCRKSL 62

>2ep4_A Ring finger protein 24; zinc binding, ubiquitin, E3 enzyme, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 74

 Score = 36.7 bits (85), Expect = 6e-04
 Identities = 16/65 (24%), Positives = 27/65 (41%), Gaps = 7/65 (10%)

Query: 132 KGKLSEIDIEREEECGICLEICCK----IVLPDCNHSMCMRCYRNWRARSQSCPFCRDSL 187
            GK+ E++    E C +CLE         + P C H+   +C   W    + CP C   +
Sbjct: 6   SGKVKELN--LHELCAVCLEDFKPRDELGICP-CKHAFHRKCLIKWLEVRKVCPLCNMPV 62

Query: 188 RRVNS 192
            ++  
Sbjct: 63  LQLAQ 67

>4ap4_A E3 ubiquitin ligase RNF4; ligase-signalling protein complex, chimera; 2.21A {Rattus norvegicus} Length = 133

 Score = 37.8 bits (87), Expect = 6e-04
 Identities = 14/54 (25%), Positives = 23/54 (42%), Gaps = 7/54 (12%)

Query: 143 EEECGICLEICCKIVLP-------DCNHSMCMRCYRNWRARSQSCPFCRDSLRR 189
              C IC++   +IV         +C H  C +C R+    + +CP CR  +  
Sbjct: 7   TVSCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLKNANTCPTCRKKINH 60

>1g25_A CDK-activating kinase assembly factor MAT1; ring finger (C3HC4), metal binding protein; NMR {Homo sapiens} SCOP: g.44.1.1 Length = 65

 Score = 36.1 bits (83), Expect = 8e-04
 Identities = 13/55 (23%), Positives = 24/55 (43%), Gaps = 6/55 (10%)

Query: 143 EEECGICLEIC-----CKIVLPDCNHSMCMRCY-RNWRARSQSCPFCRDSLRRVN 191
           ++ C  C          K+++  C H++C  C    +   + +CP C   LR+ N
Sbjct: 3   DQGCPRCKTTKYRNPSLKLMVNVCGHTLCESCVDLLFVRGAGNCPECGTPLRKSN 57

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	242
4ayc_A	138	E3 ubiquitin-protein ligase RNF8; DNA damage, K63	99.43
3ng2_A	71	RNF4, snurf, ring finger protein 4; ring domain, E	99.43
2djb_A	72	Polycomb group ring finger protein 6; PCGF6, ring	99.42
1t1h_A	78	Gspef-atpub14, armadillo repeat containing protein	99.4
2egp_A	79	Tripartite motif-containing protein 34; ZF-C3HC4 d	99.39
2ysl_A	73	Tripartite motif-containing protein 31; ring-type	99.37
3lrq_A	100	E3 ubiquitin-protein ligase TRIM37; structural gen	99.37
2ea6_A	69	Ring finger protein 4; RNF4, RES4-26, ring domain,	99.36
2csy_A	81	Zinc finger protein 183-like 1; ring finger protei	99.36
2ecy_A	66	TNF receptor-associated factor 3; metal binding pr	99.36
2d8t_A	71	Dactylidin, ring finger protein 146; RNF146, ring	99.36
2xeu_A	64	Ring finger protein 4; transcription, zinc-finger,	99.36
1iym_A	55	EL5; ring-H2 finger, ubiquitin ligase, DNA binding	99.35
2ecw_A	85	Tripartite motif-containing protein 30; metal bind	99.35
2yur_A	74	Retinoblastoma-binding protein 6; P53-associated c	99.35
2kiz_A	69	E3 ubiquitin-protein ligase arkadia; ring-H2 finge	99.34
2ckl_A	108	Polycomb group ring finger protein 4; BMI1, RING1B	99.34
2ecv_A	85	Tripartite motif-containing protein 5; metal bindi	99.34
2ct2_A	88	Tripartite motif protein 32; zinc-finger protein H	99.33
2l0b_A	91	E3 ubiquitin-protein ligase praja-1; zinc finger,	99.32
2ect_A	78	Ring finger protein 126; metal binding protein, st	99.31
2ecm_A	55	Ring finger and CHY zinc finger domain- containing	99.31
3ztg_A	92	E3 ubiquitin-protein ligase RBBP6; PACT, U-BOX, mR	99.31
2ecn_A	70	Ring finger protein 141; RNF141, ring domain, zinc	99.31
2kr4_A	85	Ubiquitin conjugation factor E4 B; U-BOX, UFD2, ri	99.3
1chc_A	68	Equine herpes virus-1 ring domain; viral protein;	99.3
2y43_A	99	E3 ubiquitin-protein ligase RAD18; DNA repair, met	99.3
3fl2_A	124	E3 ubiquitin-protein ligase UHRF1; cell cycle, DNA	99.3
1x4j_A	75	Ring finger protein 38; structural genomics, NPPSF	99.29
2ep4_A	74	Ring finger protein 24; zinc binding, ubiquitin, E	99.28
2ysj_A	63	Tripartite motif-containing protein 31; ring-type	99.28
2kre_A	100	Ubiquitin conjugation factor E4 B; U-box domain, E	99.27
2ecl_A	81	Ring-box protein 2; RNF7, ring domian, zinc-bindin	99.26
1g25_A	65	CDK-activating kinase assembly factor MAT1; ring f	99.26
1wgm_A	98	Ubiquitin conjugation factor E4A; ubiquitinating e	99.24
1v87_A	114	Deltex protein 2; ring-H2 domain, zinc-binding dom	99.24
2ecj_A	58	Tripartite motif-containing protein 39; TRIM39, ri	99.24
1jm7_A	112	BRCA1, breast cancer type 1 susceptibility protein	99.23
4ap4_A	133	E3 ubiquitin ligase RNF4; ligase-signalling protei	99.22
1z6u_A	150	NP95-like ring finger protein isoform B; structura	99.21
3l11_A	115	E3 ubiquitin-protein ligase RNF168; E3 ligase, rin	99.19
3hct_A	118	TNF receptor-associated factor 6; cross-brace, bet	99.18
1e4u_A	78	Transcriptional repressor NOT4; gene regulation, t	99.17
1rmd_A	116	RAG1; V(D)J recombination, antibody, MAD, ring fin	99.16
2ckl_B	165	Ubiquitin ligase protein RING2; BMI1, RING1B, poly	99.15
3dpl_R	106	Ring-box protein 1; ubiquitin, NEDD8, cullin, HOST	99.13
1jm7_B	117	BARD1, BRCA1-associated ring domain protein 1; rin	99.13
1bor_A	56	Transcription factor PML; proto-oncogene, nuclear	99.12
3knv_A	141	TNF receptor-associated factor 2; cross-brace, alt	99.11
2vje_A	64	E3 ubiquitin-protein ligase MDM2; proto-oncogene,	99.11
4ap4_A	133	E3 ubiquitin ligase RNF4; ligase-signalling protei	99.08
2c2l_A	281	CHIP, carboxy terminus of HSP70-interacting protei	99.08
4ic3_A	74	E3 ubiquitin-protein ligase XIAP; ring domain, zin	99.07
2f42_A	179	STIP1 homology and U-box containing protein 1; cha	99.07
2vje_B	63	MDM4 protein; proto-oncogene, phosphorylation, alt	99.07
2yu4_A	94	E3 SUMO-protein ligase NSE2; SP-ring domain, struc	99.05
2y1n_A	389	E3 ubiquitin-protein ligase; ligase-transferase co	99.02
3hcs_A	170	TNF receptor-associated factor 6; cross-brace, bet	98.98
2ecg_A	75	Baculoviral IAP repeat-containing protein 4; BIRC4	98.94
4a0k_B	117	E3 ubiquitin-protein ligase RBX1; ligase-DNA-bindi	98.91
2ea5_A	68	Cell growth regulator with ring finger domain prot	98.84
2yho_A	79	E3 ubiquitin-protein ligase mylip; ligase, E2 liga	98.83
2d8s_A	80	Cellular modulator of immune recognition; C-MIR, m	98.83
3htk_C	267	E3 SUMO-protein ligase MMS21; SUMO E3 ligase, SPL-	98.82
2ct0_A	74	Non-SMC element 1 homolog; ring domain, structural	98.75
3t6p_A	345	Baculoviral IAP repeat-containing protein 2; ring,	98.65
2bay_A	61	PRE-mRNA splicing factor PRP19; U-BOX, ubiquitin l	98.65
1wim_A	94	KIAA0161 protein; ring finger domain, UBCM4-intera	98.58
1vyx_A	60	ORF K3, K3RING; zinc-binding protein, ring domain,	98.34
3k1l_B	381	Fancl; UBC, ring, RWD, ligase; HET: MAL CIT; 3.20A	98.34
3vk6_A	101	E3 ubiquitin-protein ligase hakai; HYB, phosphotyr	98.18
3nw0_A	238	Non-structural maintenance of chromosomes element	97.35
2jun_A	101	Midline-1; B-BOX, TRIM, ring finger, alternative s	96.16
3m62_A	968	Ubiquitin conjugation factor E4; armadillo-like re	92.63
2ko5_A	99	Ring finger protein Z; lassa fever virus-Z, negati	91.34
2lri_C	66	Autoimmune regulator; Zn binding protein domain, a	89.32
1weo_A	93	Cellulose synthase, catalytic subunit (IRX3); stru	85.77
2cs3_A	93	Protein C14ORF4, MY039 protein; ZF-C3HC4 domain, s	85.39
3u5n_A	207	E3 ubiquitin-protein ligase TRIM33; TRIM33, PHD, b	81.96
2l5u_A	61	Chromodomain-helicase-DNA-binding protein 4; CHD4,	81.23
1wil_A	89	KIAA1045 protein; ring finger domain, structural g	80.28

>4ayc_A E3 ubiquitin-protein ligase RNF8; DNA damage, K63 chains; HET: CPQ; 1.90A {Homo sapiens} PDB: 4epo_C

Probab=99.43  E-value=1.2e-13  Score=109.16  Aligned_cols=49  Identities=37%  Similarity=0.879  Sum_probs=45.6

Q ss_pred             CccCeecccccccccceecCCCCcchHHHHHHHhccCCCCcCccccccc
Q 026172          141 EREEECGICLEICCKIVLPDCNHSMCMRCYRNWRARSQSCPFCRDSLRR  189 (242)
Q Consensus       141 ~~~~~C~ICl~~~~~~v~~~CgH~fC~~Ci~~w~~~~~~CP~CR~~l~~  189 (242)
                      +++..|+||++.+.+|+.++|||.||..|+..|+..+.+||+||.++..
T Consensus        51 ~~~~~C~iC~~~~~~~~~~~CgH~fc~~Ci~~~~~~~~~CP~Cr~~~~~   99 (138)
T 4ayc_A           51 ENELQCIICSEYFIEAVTLNCAHSFCSYCINEWMKRKIECPICRKDIKS   99 (138)
T ss_dssp             HHHSBCTTTCSBCSSEEEETTSCEEEHHHHHHHTTTCSBCTTTCCBCCC
T ss_pred             cccCCCcccCcccCCceECCCCCCccHHHHHHHHHcCCcCCCCCCcCCC
Confidence            4567899999999999999999999999999999999999999999864

>3ng2_A RNF4, snurf, ring finger protein 4; ring domain, E3 ligase, ubiquitylation, sumoylation, zinc-FI metal binding protein; 1.80A {Rattus norvegicus}

Probab=99.43  E-value=5.7e-14  Score=97.96  Aligned_cols=55  Identities=25%  Similarity=0.657  Sum_probs=47.8

Q ss_pred             CCccCeecccccccccc-------eecCCCCcchHHHHHHHhccCCCCcCcccccccccCCC
Q 026172          140 IEREEECGICLEICCKI-------VLPDCNHSMCMRCYRNWRARSQSCPFCRDSLRRVNSGD  194 (242)
Q Consensus       140 ~~~~~~C~ICl~~~~~~-------v~~~CgH~fC~~Ci~~w~~~~~~CP~CR~~l~~~~~~~  194 (242)
                      .+++..|+||++.+.++       +.++|||.||..|+.+|+..+.+||+||.++...+...
T Consensus         7 ~~~~~~C~IC~~~~~~~~~~~~~~~~~~CgH~fc~~Ci~~~~~~~~~CP~Cr~~~~~~~~~~   68 (71)
T 3ng2_A            7 PSGTVSCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLKNANTCPTCRKKINHKRYHP   68 (71)
T ss_dssp             CTTCCBCTTTCCBHHHHHTTTCCEEECTTSCEEEHHHHHHHHHHCSBCTTTCCBCCCCSCCC
T ss_pred             CCCCCCCcccChhhhccccccCCeEeCCCCChHhHHHHHHHHHcCCCCCCCCCccChhheee
Confidence            35678999999999877       78999999999999999998899999999987554443

>2djb_A Polycomb group ring finger protein 6; PCGF6, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.42  E-value=1.2e-13  Score=97.07  Aligned_cols=55  Identities=20%  Similarity=0.430  Sum_probs=48.2

Q ss_pred             cCCccCeecccccccccceec-CCCCcchHHHHHHHhccCCCCcCcccccccccCC
Q 026172          139 DIEREEECGICLEICCKIVLP-DCNHSMCMRCYRNWRARSQSCPFCRDSLRRVNSG  193 (242)
Q Consensus       139 ~~~~~~~C~ICl~~~~~~v~~-~CgH~fC~~Ci~~w~~~~~~CP~CR~~l~~~~~~  193 (242)
                      ..+++..|+||++.+.+++.+ +|||.||..|+.+|+.....||+||.++...++.
T Consensus        11 ~~~~~~~C~IC~~~~~~p~~~~~CgH~fC~~Ci~~~~~~~~~CP~Cr~~~~~~~~~   66 (72)
T 2djb_A           11 ELTPYILCSICKGYLIDATTITECLHTFCKSCIVRHFYYSNRCPKCNIVVHQTQPL   66 (72)
T ss_dssp             CCCGGGSCTTTSSCCSSCEECSSSCCEECHHHHHHHHHHCSSCTTTCCCCCSSCSC
T ss_pred             hcCCCCCCCCCChHHHCcCEECCCCCHHHHHHHHHHHHcCCcCCCcCcccCccccc
Confidence            456778999999999999875 9999999999999999899999999998754443

>1t1h_A Gspef-atpub14, armadillo repeat containing protein; ubiquitin ligase, E3 ligase, U-BOX,; NMR {Arabidopsis thaliana} SCOP: g.44.1.2

Probab=99.40  E-value=1.5e-13  Score=97.76  Aligned_cols=52  Identities=17%  Similarity=0.374  Sum_probs=46.9

Q ss_pred             cCCccCeecccccccccceecCCCCcchHHHHHHHhcc-CCCCcCcccccccc
Q 026172          139 DIEREEECGICLEICCKIVLPDCNHSMCMRCYRNWRAR-SQSCPFCRDSLRRV  190 (242)
Q Consensus       139 ~~~~~~~C~ICl~~~~~~v~~~CgH~fC~~Ci~~w~~~-~~~CP~CR~~l~~~  190 (242)
                      ...++..|+||++.+.+|+.++|||+||..|+.+|+.. ..+||.||.++...
T Consensus         4 ~~~~~~~C~IC~~~~~~Pv~~~CgH~fc~~Ci~~~~~~~~~~CP~C~~~~~~~   56 (78)
T 1t1h_A            4 EFPEYFRCPISLELMKDPVIVSTGQTYERSSIQKWLDAGHKTCPKSQETLLHA   56 (78)
T ss_dssp             CCSSSSSCTTTSCCCSSEEEETTTEEEEHHHHHHHHTTTCCBCTTTCCBCSSC
T ss_pred             CCcccCCCCCccccccCCEEcCCCCeecHHHHHHHHHHCcCCCCCCcCCCChh
Confidence            45678999999999999999999999999999999986 88999999988643

>2egp_A Tripartite motif-containing protein 34; ZF-C3HC4 domain, tripartite motif protein 34, interferon- responsive finger protein 1; NMR {Homo sapiens}

Probab=99.39  E-value=1.1e-13  Score=98.48  Aligned_cols=57  Identities=30%  Similarity=0.592  Sum_probs=48.8

Q ss_pred             cCCccCeecccccccccceecCCCCcchHHHHHHHhcc-------CCCCcCcccccccccCCCc
Q 026172          139 DIEREEECGICLEICCKIVLPDCNHSMCMRCYRNWRAR-------SQSCPFCRDSLRRVNSGDL  195 (242)
Q Consensus       139 ~~~~~~~C~ICl~~~~~~v~~~CgH~fC~~Ci~~w~~~-------~~~CP~CR~~l~~~~~~~~  195 (242)
                      ..+++..|+||++.+.+++.++|||.||..|+.+|+..       ...||.||.++.......+
T Consensus         8 ~~~~~~~C~IC~~~~~~p~~l~CgH~fC~~Ci~~~~~~~~~~~~~~~~CP~Cr~~~~~~~l~~n   71 (79)
T 2egp_A            8 NVQEEVTCPICLELLTEPLSLDCGHSLCRACITVSNKEAVTSMGGKSSCPVCGISYSFEHLQAN   71 (79)
T ss_dssp             CCCCCCEETTTTEECSSCCCCSSSCCCCHHHHSCCCCCCSSSCCCCCCCSSSCCCCCSSGGGTC
T ss_pred             hcccCCCCcCCCcccCCeeECCCCCHHHHHHHHHHHHhcccCCCCCCcCCCCCCcCCHhhCCcC
Confidence            45678999999999999999999999999999999875       6799999999875444433

>2ysl_A Tripartite motif-containing protein 31; ring-type zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.37  E-value=4.2e-13  Score=94.07  Aligned_cols=51  Identities=35%  Similarity=0.834  Sum_probs=45.8

Q ss_pred             cCCccCeecccccccccceecCCCCcchHHHHHHHhc---cCCCCcCccccccc
Q 026172          139 DIEREEECGICLEICCKIVLPDCNHSMCMRCYRNWRA---RSQSCPFCRDSLRR  189 (242)
Q Consensus       139 ~~~~~~~C~ICl~~~~~~v~~~CgH~fC~~Ci~~w~~---~~~~CP~CR~~l~~  189 (242)
                      ...++..|+||++.+.+++.++|||.||..|+..|+.   ....||+||.++..
T Consensus        16 ~~~~~~~C~IC~~~~~~~~~~~CgH~fC~~Ci~~~~~~~~~~~~CP~Cr~~~~~   69 (73)
T 2ysl_A           16 KLQEEVICPICLDILQKPVTIDCGHNFCLKCITQIGETSCGFFKCPLCKTSVRK   69 (73)
T ss_dssp             CCCCCCBCTTTCSBCSSEEECTTCCEEEHHHHHHHCSSSCSCCCCSSSCCCCCC
T ss_pred             hCccCCEeccCCcccCCeEEcCCCChhhHHHHHHHHHcCCCCCCCCCCCCcCCc
Confidence            4567789999999999999999999999999999996   56799999998864

>3lrq_A E3 ubiquitin-protein ligase TRIM37; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; HET: MSE; 2.29A {Homo sapiens}

Probab=99.37  E-value=8.8e-14  Score=104.15  Aligned_cols=50  Identities=32%  Similarity=0.770  Sum_probs=45.4

Q ss_pred             CccCeeccccccccccee-cCCCCcchHHHHHHHhccC-CCCcCcccccccc
Q 026172          141 EREEECGICLEICCKIVL-PDCNHSMCMRCYRNWRARS-QSCPFCRDSLRRV  190 (242)
Q Consensus       141 ~~~~~C~ICl~~~~~~v~-~~CgH~fC~~Ci~~w~~~~-~~CP~CR~~l~~~  190 (242)
                      .++..|+||++.+.+|+. ++|||.||..|+.+|+... ..||.||.++...
T Consensus        20 ~~~~~C~IC~~~~~~p~~~~~CgH~FC~~Ci~~~~~~~~~~CP~Cr~~~~~~   71 (100)
T 3lrq_A           20 AEVFRCFICMEKLRDARLCPHCSKLCCFSCIRRWLTEQRAQCPHCRAPLQLR   71 (100)
T ss_dssp             HHHTBCTTTCSBCSSEEECTTTCCEEEHHHHHHHHHHTCSBCTTTCCBCCGG
T ss_pred             CCCCCCccCCccccCccccCCCCChhhHHHHHHHHHHCcCCCCCCCCcCCHH
Confidence            466899999999999998 9999999999999999976 7999999998643

>2ea6_A Ring finger protein 4; RNF4, RES4-26, ring domain, zinc- binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.36  E-value=2.2e-13  Score=94.19  Aligned_cols=50  Identities=28%  Similarity=0.752  Sum_probs=45.1

Q ss_pred             cCCccCeecccccccccc-------eecCCCCcchHHHHHHHhccCCCCcCcccccc
Q 026172          139 DIEREEECGICLEICCKI-------VLPDCNHSMCMRCYRNWRARSQSCPFCRDSLR  188 (242)
Q Consensus       139 ~~~~~~~C~ICl~~~~~~-------v~~~CgH~fC~~Ci~~w~~~~~~CP~CR~~l~  188 (242)
                      ...++..|+||++.+.++       +.++|||.||..|+.+|+.....||+||.++.
T Consensus        11 ~~~~~~~C~IC~~~~~~~~~~~~~~~~~~CgH~fc~~Ci~~~~~~~~~CP~Cr~~~~   67 (69)
T 2ea6_A           11 RPSGTVSCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLKNANTCPTCRKKIN   67 (69)
T ss_dssp             CTTCCCCCTTTCCCHHHHTTTTCCEEECSSSCEEEHHHHHHHHHHCSSCTTTCCCCC
T ss_pred             CCCCCCCCcccCccccccccccCCeEeCCCCChhcHHHHHHHHHcCCCCCCCCCccC
Confidence            445778999999999876       78899999999999999998999999999876

>2csy_A Zinc finger protein 183-like 1; ring finger protein 161, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.36  E-value=4.7e-13  Score=96.03  Aligned_cols=50  Identities=22%  Similarity=0.460  Sum_probs=45.9

Q ss_pred             cCCccCeecccccccccceecCCCCcchHHHHHHHhccCCCCcCcccccc
Q 026172          139 DIEREEECGICLEICCKIVLPDCNHSMCMRCYRNWRARSQSCPFCRDSLR  188 (242)
Q Consensus       139 ~~~~~~~C~ICl~~~~~~v~~~CgH~fC~~Ci~~w~~~~~~CP~CR~~l~  188 (242)
                      +.+....|+||++.+.+++.++|||.||..|+.+|+.....||+||.++.
T Consensus        11 ~~~~~~~C~IC~~~~~~p~~~~CgH~fC~~Ci~~~~~~~~~CP~Cr~~~~   60 (81)
T 2csy_A           11 EEEIPFRCFICRQAFQNPVVTKCRHYFCESCALEHFRATPRCYICDQPTG   60 (81)
T ss_dssp             CCCCCSBCSSSCSBCCSEEECTTSCEEEHHHHHHHHHHCSBCSSSCCBCC
T ss_pred             cCCCCCCCcCCCchhcCeeEccCCCHhHHHHHHHHHHCCCcCCCcCcccc
Confidence            34567899999999999999999999999999999998999999999885

>2ecy_A TNF receptor-associated factor 3; metal binding protein, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.36  E-value=4e-13  Score=92.68  Aligned_cols=51  Identities=24%  Similarity=0.663  Sum_probs=45.6

Q ss_pred             cCCccCeecccccccccceecCCCCcchHHHHHHHhc-cCCCCcCccccccc
Q 026172          139 DIEREEECGICLEICCKIVLPDCNHSMCMRCYRNWRA-RSQSCPFCRDSLRR  189 (242)
Q Consensus       139 ~~~~~~~C~ICl~~~~~~v~~~CgH~fC~~Ci~~w~~-~~~~CP~CR~~l~~  189 (242)
                      ...++..|+||++.+.+++.++|||.||..|+.+|+. ....||+||.++..
T Consensus        11 ~~~~~~~C~IC~~~~~~p~~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~   62 (66)
T 2ecy_A           11 TVEDKYKCEKCHLVLCSPKQTECGHRFCESCMAALLSSSSPKCTACQESIVK   62 (66)
T ss_dssp             SCCCCEECTTTCCEESSCCCCSSSCCCCHHHHHHHHTTSSCCCTTTCCCCCT
T ss_pred             cCCcCCCCCCCChHhcCeeECCCCCHHHHHHHHHHHHhCcCCCCCCCcCCCh
Confidence            4457789999999999999999999999999999994 67899999998864

>2d8t_A Dactylidin, ring finger protein 146; RNF146, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.36  E-value=2.9e-13  Score=94.82  Aligned_cols=50  Identities=28%  Similarity=0.692  Sum_probs=45.9

Q ss_pred             CCccCeecccccccccceecCCCCcchHHHHHHHhccCCCCcCccccccc
Q 026172          140 IEREEECGICLEICCKIVLPDCNHSMCMRCYRNWRARSQSCPFCRDSLRR  189 (242)
Q Consensus       140 ~~~~~~C~ICl~~~~~~v~~~CgH~fC~~Ci~~w~~~~~~CP~CR~~l~~  189 (242)
                      ..++..|+||++.+.+++.++|||.||..|+.+|+.....||+||.++..
T Consensus        12 ~~~~~~C~IC~~~~~~~~~~~CgH~fC~~Ci~~~~~~~~~CP~Cr~~~~~   61 (71)
T 2d8t_A           12 SLTVPECAICLQTCVHPVSLPCKHVFCYLCVKGASWLGKRCALCRQEIPE   61 (71)
T ss_dssp             SSSCCBCSSSSSBCSSEEEETTTEEEEHHHHHHCTTCSSBCSSSCCBCCH
T ss_pred             CCCCCCCccCCcccCCCEEccCCCHHHHHHHHHHHHCCCcCcCcCchhCH
Confidence            34668999999999999999999999999999999988999999999874

>2xeu_A Ring finger protein 4; transcription, zinc-finger, metal-binding; HET: SUC; 1.50A {Homo sapiens}

Probab=99.36  E-value=1.8e-13  Score=93.29  Aligned_cols=50  Identities=28%  Similarity=0.755  Sum_probs=44.4

Q ss_pred             ccCeecccccccccc-------eecCCCCcchHHHHHHHhccCCCCcCccccccccc
Q 026172          142 REEECGICLEICCKI-------VLPDCNHSMCMRCYRNWRARSQSCPFCRDSLRRVN  191 (242)
Q Consensus       142 ~~~~C~ICl~~~~~~-------v~~~CgH~fC~~Ci~~w~~~~~~CP~CR~~l~~~~  191 (242)
                      ++.+|+||++.+.++       +.++|||.||..|+.+|+..+.+||+||.++...+
T Consensus         2 ~~~~C~IC~~~~~~~~~~~~~~~~~~CgH~fc~~Ci~~~~~~~~~CP~Cr~~~~~~~   58 (64)
T 2xeu_A            2 AMVSCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLKNANTCPTCRKKINHKR   58 (64)
T ss_dssp             CCCBCTTTCCBHHHHHHTTCCEEEETTSCEEEHHHHHHHHHHCSBCTTTCCBCTTTC
T ss_pred             CCCCCCccChhhhCccccCCCEEeCCCCCchhHHHHHHHHHcCCCCCCCCccCCccc
Confidence            457899999999876       77899999999999999999999999999987543

>1iym_A EL5; ring-H2 finger, ubiquitin ligase, DNA binding protein; NMR {Oryza sativa} SCOP: g.44.1.1

Probab=99.35  E-value=3.8e-13  Score=89.27  Aligned_cols=48  Identities=25%  Similarity=0.681  Sum_probs=41.9

Q ss_pred             CccCeeccccccccc---ceecC-CCCcchHHHHHHHhccCCCCcCcccccc
Q 026172          141 EREEECGICLEICCK---IVLPD-CNHSMCMRCYRNWRARSQSCPFCRDSLR  188 (242)
Q Consensus       141 ~~~~~C~ICl~~~~~---~v~~~-CgH~fC~~Ci~~w~~~~~~CP~CR~~l~  188 (242)
                      +++.+|+||++.+..   ++.++ |||.||..|+.+|+..+.+||+||.++.
T Consensus         3 ~~~~~C~IC~~~~~~~~~~~~~~~C~H~f~~~Ci~~w~~~~~~CP~Cr~~~~   54 (55)
T 1iym_A            3 DDGVECAVCLAELEDGEEARFLPRCGHGFHAECVDMWLGSHSTCPLCRLTVV   54 (55)
T ss_dssp             CCSCCCTTTCCCCCTTSCCEECSSSCCEECTTHHHHTTTTCCSCSSSCCCSC
T ss_pred             CCCCcCccCCccccCCCceEECCCCCCcccHHHHHHHHHcCCcCcCCCCEeE
Confidence            466899999999886   55555 9999999999999999999999998764

>2ecw_A Tripartite motif-containing protein 30; metal binding protein, structural genomics, NPPSFA; NMR {Mus musculus}

Probab=99.35  E-value=5.2e-13  Score=95.85  Aligned_cols=53  Identities=38%  Similarity=0.668  Sum_probs=47.0

Q ss_pred             cCCccCeecccccccccceecCCCCcchHHHHHHHhcc------CCCCcCccccccccc
Q 026172          139 DIEREEECGICLEICCKIVLPDCNHSMCMRCYRNWRAR------SQSCPFCRDSLRRVN  191 (242)
Q Consensus       139 ~~~~~~~C~ICl~~~~~~v~~~CgH~fC~~Ci~~w~~~------~~~CP~CR~~l~~~~  191 (242)
                      ...++..|+||++.+.+++.++|||.||..|+..|+..      ...||.||.++....
T Consensus        15 ~~~~~~~C~IC~~~~~~p~~~~CgH~fC~~Ci~~~~~~~~~~~~~~~CP~Cr~~~~~~~   73 (85)
T 2ecw_A           15 MIKEEVTCPICLELLKEPVSADCNHSFCRACITLNYESNRNTDGKGNCPVCRVPYPFGN   73 (85)
T ss_dssp             CCCTTTSCTTTCSCCSSCEECTTSCCBCHHHHHHHHHHSBCTTSCBCCTTTCCCCCTTC
T ss_pred             hCccCCCCcCCChhhCcceeCCCCCHHHHHHHHHHHHhccCCCCCCCCCCCCCcCCHHh
Confidence            45677899999999999999999999999999999886      789999999987543

>2yur_A Retinoblastoma-binding protein 6; P53-associated cellular protein of testis, proliferation potential-related protein, protein P2P-R; NMR {Homo sapiens}

Probab=99.35  E-value=4.2e-13  Score=94.89  Aligned_cols=50  Identities=32%  Similarity=0.607  Sum_probs=44.6

Q ss_pred             cCCccCeecccccccccceecC-CCCcchHHHHHHHhccC--CCCcCcccccc
Q 026172          139 DIEREEECGICLEICCKIVLPD-CNHSMCMRCYRNWRARS--QSCPFCRDSLR  188 (242)
Q Consensus       139 ~~~~~~~C~ICl~~~~~~v~~~-CgH~fC~~Ci~~w~~~~--~~CP~CR~~l~  188 (242)
                      ...++..|+||++.+.+++.++ |||.||..|+..|+..+  ..||+||.++.
T Consensus        11 ~~~~~~~C~IC~~~~~~p~~~~~CgH~fC~~Ci~~~~~~~~~~~CP~Cr~~~~   63 (74)
T 2yur_A           11 PIPDELLCLICKDIMTDAVVIPCCGNSYCDECIRTALLESDEHTCPTCHQNDV   63 (74)
T ss_dssp             CSCGGGSCSSSCCCCTTCEECSSSCCEECTTHHHHHHHHSSSSCCSSSCCSSC
T ss_pred             cCCCCCCCcCCChHHhCCeEcCCCCCHHHHHHHHHHHHhcCCCcCCCCCCcCC
Confidence            4567789999999999999998 99999999999999854  79999999754

>2kiz_A E3 ubiquitin-protein ligase arkadia; ring-H2 finger, E3 ligase, Zn binding domain, metal zinc, zinc-finger, metal binding protein; NMR {Homo sapiens}

Probab=99.34  E-value=8.9e-13  Score=91.57  Aligned_cols=53  Identities=28%  Similarity=0.652  Sum_probs=44.8

Q ss_pred             cCCccCeecccccccc---cceecCCCCcchHHHHHHHhccCCCCcCccccccccc
Q 026172          139 DIEREEECGICLEICC---KIVLPDCNHSMCMRCYRNWRARSQSCPFCRDSLRRVN  191 (242)
Q Consensus       139 ~~~~~~~C~ICl~~~~---~~v~~~CgH~fC~~Ci~~w~~~~~~CP~CR~~l~~~~  191 (242)
                      ....+..|+||++.+.   .++.++|||.||..|+.+|+..+.+||+||.++....
T Consensus        10 ~~~~~~~C~IC~~~~~~~~~~~~~~C~H~fc~~Ci~~~~~~~~~CP~Cr~~~~~~~   65 (69)
T 2kiz_A           10 EEDTEEKCTICLSILEEGEDVRRLPCMHLFHQVCVDQWLITNKKCPICRVDIEAQL   65 (69)
T ss_dssp             STTCCCSBTTTTBCCCSSSCEEECTTSCEEEHHHHHHHHHHCSBCTTTCSBSCSCC
T ss_pred             cCCCCCCCeeCCccccCCCcEEEeCCCCHHHHHHHHHHHHcCCCCcCcCccccCcC
Confidence            3456688999999885   4567899999999999999998899999999987543

>2ckl_A Polycomb group ring finger protein 4; BMI1, RING1B, polycomb, E3-ligase, nuclear protein, chromosomal protein, transcription regulation; 2.0A {Mus musculus} PDB: 3rpg_B 2h0d_A

Probab=99.34  E-value=3.5e-13  Score=101.96  Aligned_cols=52  Identities=21%  Similarity=0.570  Sum_probs=47.1

Q ss_pred             cCCccCeecccccccccceec-CCCCcchHHHHHHHhccCCCCcCcccccccc
Q 026172          139 DIEREEECGICLEICCKIVLP-DCNHSMCMRCYRNWRARSQSCPFCRDSLRRV  190 (242)
Q Consensus       139 ~~~~~~~C~ICl~~~~~~v~~-~CgH~fC~~Ci~~w~~~~~~CP~CR~~l~~~  190 (242)
                      ...++..|+||++.+.+++.+ +|||.||..|+..|+..+..||.||.++...
T Consensus        11 ~~~~~~~C~IC~~~~~~p~~~~~CgH~fC~~Ci~~~~~~~~~CP~Cr~~~~~~   63 (108)
T 2ckl_A           11 ELNPHLMCVLCGGYFIDATTIIECLHSFCKTCIVRYLETSKYCPICDVQVHKT   63 (108)
T ss_dssp             HHGGGTBCTTTSSBCSSEEEETTTCCEEEHHHHHHHHTSCSBCTTTCCBSCSS
T ss_pred             ccCCcCCCccCChHHhCcCEeCCCCChhhHHHHHHHHHhCCcCcCCCcccccc
Confidence            456778999999999999886 9999999999999999899999999998753

>2ecv_A Tripartite motif-containing protein 5; metal binding protein, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.34  E-value=6.2e-13  Score=95.43  Aligned_cols=57  Identities=33%  Similarity=0.688  Sum_probs=48.8

Q ss_pred             cCCccCeecccccccccceecCCCCcchHHHHHHHhcc------CCCCcCcccccccccCCCc
Q 026172          139 DIEREEECGICLEICCKIVLPDCNHSMCMRCYRNWRAR------SQSCPFCRDSLRRVNSGDL  195 (242)
Q Consensus       139 ~~~~~~~C~ICl~~~~~~v~~~CgH~fC~~Ci~~w~~~------~~~CP~CR~~l~~~~~~~~  195 (242)
                      ...++..|+||++.+.+++.++|||.||..|+..|+..      ...||.||.++.......+
T Consensus        15 ~~~~~~~C~IC~~~~~~p~~~~CgH~fC~~Ci~~~~~~~~~~~~~~~CP~Cr~~~~~~~~~~n   77 (85)
T 2ecv_A           15 NVKEEVTCPICLELLTQPLSLDCGHSFCQACLTANHKKSMLDKGESSCPVCRISYQPENIRPN   77 (85)
T ss_dssp             CCCCCCCCTTTCSCCSSCBCCSSSCCBCTTHHHHHHHHHHHTTSCCCCTTTCCSSCSSSCCCS
T ss_pred             HccCCCCCCCCCcccCCceeCCCCCHHHHHHHHHHHHHhhcCCCCCcCCCCCCccCHHhcCcc
Confidence            45677899999999999999999999999999999876      8899999999875444333

>2ct2_A Tripartite motif protein 32; zinc-finger protein HT2A, TAT- interacting protein, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.33  E-value=9.8e-13  Score=95.31  Aligned_cols=51  Identities=33%  Similarity=0.737  Sum_probs=45.6

Q ss_pred             cCCccCeeccccccccc----ceecCCCCcchHHHHHHHhccC---CCCcCccccccc
Q 026172          139 DIEREEECGICLEICCK----IVLPDCNHSMCMRCYRNWRARS---QSCPFCRDSLRR  189 (242)
Q Consensus       139 ~~~~~~~C~ICl~~~~~----~v~~~CgH~fC~~Ci~~w~~~~---~~CP~CR~~l~~  189 (242)
                      ...++.+|+||++.+.+    ++.++|||.||..|+.+|+...   ..||+||.++..
T Consensus        11 ~~~~~~~C~IC~~~~~~~~~~~~~~~CgH~fC~~Ci~~~~~~~~~~~~CP~Cr~~~~~   68 (88)
T 2ct2_A           11 ALREVLECPICMESFTEEQLRPKLLHCGHTICRQCLEKLLASSINGVRCPFCSKITRI   68 (88)
T ss_dssp             CCCSCCBCTTTCCBCCTTSSCEEECSSSCEEEHHHHHHHHHHCSSCBCCTTTCCCBCC
T ss_pred             hccCCCCCccCCccccccCCCeEECCCCChhhHHHHHHHHHcCCCCcCCCCCCCcccc
Confidence            55677899999999998    8889999999999999999864   899999998764

>2l0b_A E3 ubiquitin-protein ligase praja-1; zinc finger, NESG, structural genomics, PSI-2, protein struc initiative; NMR {Homo sapiens}

Probab=99.32  E-value=1.3e-12  Score=96.15  Aligned_cols=49  Identities=29%  Similarity=0.621  Sum_probs=43.7

Q ss_pred             CCccCeeccccccccc---ceecCCCCcchHHHHHHHhccCCCCcCcccccc
Q 026172          140 IEREEECGICLEICCK---IVLPDCNHSMCMRCYRNWRARSQSCPFCRDSLR  188 (242)
Q Consensus       140 ~~~~~~C~ICl~~~~~---~v~~~CgH~fC~~Ci~~w~~~~~~CP~CR~~l~  188 (242)
                      .+++..|+||++.+..   ++.++|||.||..|+.+|+..+.+||+||.++.
T Consensus        37 ~~~~~~C~IC~~~~~~~~~~~~l~C~H~Fh~~Ci~~wl~~~~~CP~Cr~~~~   88 (91)
T 2l0b_A           37 VGQEMCCPICCSEYVKGDVATELPCHHYFHKPCVSIWLQKSGTCPVCRCMFP   88 (91)
T ss_dssp             SSSCSEETTTTEECCTTCEEEEETTTEEEEHHHHHHHHTTTCBCTTTCCBSS
T ss_pred             cCCCCCCcccChhhcCCCcEEecCCCChHHHHHHHHHHHcCCcCcCcCccCC
Confidence            4567899999999886   666889999999999999999999999999875

>2ect_A Ring finger protein 126; metal binding protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}

Probab=99.31  E-value=9e-13  Score=93.74  Aligned_cols=54  Identities=31%  Similarity=0.598  Sum_probs=45.7

Q ss_pred             cCCccCeecccccccccc---eecCCCCcchHHHHHHHhccCCCCcCcccccccccC
Q 026172          139 DIEREEECGICLEICCKI---VLPDCNHSMCMRCYRNWRARSQSCPFCRDSLRRVNS  192 (242)
Q Consensus       139 ~~~~~~~C~ICl~~~~~~---v~~~CgH~fC~~Ci~~w~~~~~~CP~CR~~l~~~~~  192 (242)
                      ...++.+|+||++.+..+   ..++|||.||..|+.+|+....+||+||.++...+.
T Consensus        11 ~~~~~~~C~IC~~~~~~~~~~~~~~C~H~fc~~Ci~~~~~~~~~CP~Cr~~~~~~~~   67 (78)
T 2ect_A           11 HVGSGLECPVCKEDYALGESVRQLPCNHLFHDSCIVPWLEQHDSCPVCRKSLTGQNT   67 (78)
T ss_dssp             TSSSSCCCTTTTSCCCTTSCEEECTTSCEEETTTTHHHHTTTCSCTTTCCCCCCSCS
T ss_pred             cCCCCCCCeeCCccccCCCCEEEeCCCCeecHHHHHHHHHcCCcCcCcCCccCCccc
Confidence            445678999999998754   456899999999999999989999999999875433

>2ecm_A Ring finger and CHY zinc finger domain- containing protein 1; RCHY1, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Mus musculus} PDB: 2jrj_A

Probab=99.31  E-value=7.4e-13  Score=87.75  Aligned_cols=47  Identities=26%  Similarity=0.592  Sum_probs=42.1

Q ss_pred             ccCeeccccccccc----ceecCCCCcchHHHHHHHhccCCCCcCcccccc
Q 026172          142 REEECGICLEICCK----IVLPDCNHSMCMRCYRNWRARSQSCPFCRDSLR  188 (242)
Q Consensus       142 ~~~~C~ICl~~~~~----~v~~~CgH~fC~~Ci~~w~~~~~~CP~CR~~l~  188 (242)
                      ++..|+||++.+.+    ++.++|||.||..|+.+|+....+||+||.++.
T Consensus         4 ~~~~C~IC~~~~~~~~~~~~~~~CgH~fc~~Ci~~~~~~~~~CP~Cr~~~~   54 (55)
T 2ecm_A            4 GSSGCPICLEDIHTSRVVAHVLPCGHLLHRTCYEEMLKEGYRCPLCSGPSS   54 (55)
T ss_dssp             CCCSCTTTCCCCCTTTSCEEECTTSCEEETTHHHHHHHHTCCCTTSCCSSC
T ss_pred             CCCcCcccChhhcCCCcCeEecCCCCcccHHHHHHHHHcCCcCCCCCCcCC
Confidence            56789999999865    678899999999999999998899999998764

>3ztg_A E3 ubiquitin-protein ligase RBBP6; PACT, U-BOX, mRNA processing, mRNA splicing; NMR {Homo sapiens}

Probab=99.31  E-value=1.4e-12  Score=95.55  Aligned_cols=50  Identities=30%  Similarity=0.589  Sum_probs=44.6

Q ss_pred             cCCccCeecccccccccceecC-CCCcchHHHHHHHhc--cCCCCcCcccccc
Q 026172          139 DIEREEECGICLEICCKIVLPD-CNHSMCMRCYRNWRA--RSQSCPFCRDSLR  188 (242)
Q Consensus       139 ~~~~~~~C~ICl~~~~~~v~~~-CgH~fC~~Ci~~w~~--~~~~CP~CR~~l~  188 (242)
                      ...++..|+||++.+.+|+.++ |||+||..|+..|+.  ....||.||.++.
T Consensus         9 ~~~~~~~C~IC~~~~~~p~~~~~CgH~fC~~Ci~~~~~~~~~~~CP~Cr~~~~   61 (92)
T 3ztg_A            9 PIPDELLCLICKDIMTDAVVIPCCGNSYCDECIRTALLESDEHTCPTCHQNDV   61 (92)
T ss_dssp             CCCTTTEETTTTEECSSCEECTTTCCEECHHHHHHHHHHCTTCCCTTTCCSSC
T ss_pred             cCCcCCCCCCCChhhcCceECCCCCCHHHHHHHHHHHHhcCCCcCcCCCCcCC
Confidence            5567899999999999999999 999999999999986  3479999999873

>2ecn_A Ring finger protein 141; RNF141, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.31  E-value=6.1e-13  Score=92.68  Aligned_cols=51  Identities=33%  Similarity=0.920  Sum_probs=45.8

Q ss_pred             cCCccCeecccccccccceecCCCCcchHHHHHHHhccCCCCcCcccccccc
Q 026172          139 DIEREEECGICLEICCKIVLPDCNHSMCMRCYRNWRARSQSCPFCRDSLRRV  190 (242)
Q Consensus       139 ~~~~~~~C~ICl~~~~~~v~~~CgH~fC~~Ci~~w~~~~~~CP~CR~~l~~~  190 (242)
                      ...++..|+||++.+.+ +.++|||.||..|+.+|+.+...||+||.++...
T Consensus        11 ~~~~~~~C~IC~~~~~~-~~~~CgH~fc~~Ci~~~~~~~~~CP~Cr~~~~~~   61 (70)
T 2ecn_A           11 QLTDEEECCICMDGRAD-LILPCAHSFCQKCIDKWSDRHRNCPICRLQMTGA   61 (70)
T ss_dssp             CCCCCCCCSSSCCSCCS-EEETTTEEECHHHHHHSSCCCSSCHHHHHCTTCC
T ss_pred             cCCCCCCCeeCCcCccC-cccCCCCcccHHHHHHHHHCcCcCCCcCCcccCC
Confidence            34567899999999999 8889999999999999999999999999998743

>2kr4_A Ubiquitin conjugation factor E4 B; U-BOX, UFD2, ring, E3 ligase, UBL conjugation pathway; NMR {Mus musculus}

Probab=99.30  E-value=1.3e-12  Score=95.05  Aligned_cols=51  Identities=18%  Similarity=0.042  Sum_probs=47.1

Q ss_pred             cCCccCeecccccccccceecCCCCcchHHHHHHHhccCCCCcCccccccc
Q 026172          139 DIEREEECGICLEICCKIVLPDCNHSMCMRCYRNWRARSQSCPFCRDSLRR  189 (242)
Q Consensus       139 ~~~~~~~C~ICl~~~~~~v~~~CgH~fC~~Ci~~w~~~~~~CP~CR~~l~~  189 (242)
                      ...+++.|+||++.+.+||.++|||+||..||..|+....+||+||.++..
T Consensus        10 ~~p~~~~CpI~~~~m~dPV~~~cGhtf~r~~I~~~l~~~~~cP~~~~~l~~   60 (85)
T 2kr4_A           10 DAPDEFRDPLMDTLMTDPVRLPSGTVMDRSIILRHLLNSPTDPFNRQMLTE   60 (85)
T ss_dssp             TCCTTTBCTTTCSBCSSEEECTTSCEEEHHHHHHHHHHCSBCTTTCCBCCG
T ss_pred             cCchheECcccCchhcCCeECCCCCEECHHHHHHHHhcCCCCCCCcCCCCh
Confidence            456789999999999999999999999999999999988999999998874

>1chc_A Equine herpes virus-1 ring domain; viral protein; NMR {Equid herpesvirus 1} SCOP: g.44.1.1

Probab=99.30  E-value=9.7e-13  Score=91.05  Aligned_cols=48  Identities=29%  Similarity=0.783  Sum_probs=43.7

Q ss_pred             ccCeecccccccccc-eecCCCCcchHHHHHHHhccCCCCcCccccccc
Q 026172          142 REEECGICLEICCKI-VLPDCNHSMCMRCYRNWRARSQSCPFCRDSLRR  189 (242)
Q Consensus       142 ~~~~C~ICl~~~~~~-v~~~CgH~fC~~Ci~~w~~~~~~CP~CR~~l~~  189 (242)
                      .+..|+||++.+.++ +.++|||.||..|+.+|+..+.+||+||.++..
T Consensus         4 ~~~~C~IC~~~~~~~~~~~~C~H~fc~~Ci~~~~~~~~~CP~Cr~~~~~   52 (68)
T 1chc_A            4 VAERCPICLEDPSNYSMALPCLHAFCYVCITRWIRQNPTCPLCKVPVES   52 (68)
T ss_dssp             CCCCCSSCCSCCCSCEEETTTTEEESTTHHHHHHHHSCSTTTTCCCCCC
T ss_pred             CCCCCeeCCccccCCcEecCCCCeeHHHHHHHHHhCcCcCcCCChhhHh
Confidence            567899999999985 788999999999999999989999999999874

>2y43_A E3 ubiquitin-protein ligase RAD18; DNA repair, metal-binding, translesion synthesis, UB conjugation pathway; 1.80A {Homo sapiens}

Probab=99.30  E-value=8.8e-13  Score=98.14  Aligned_cols=49  Identities=27%  Similarity=0.707  Sum_probs=44.9

Q ss_pred             CccCeecccccccccceec-CCCCcchHHHHHHHhccCCCCcCccccccc
Q 026172          141 EREEECGICLEICCKIVLP-DCNHSMCMRCYRNWRARSQSCPFCRDSLRR  189 (242)
Q Consensus       141 ~~~~~C~ICl~~~~~~v~~-~CgH~fC~~Ci~~w~~~~~~CP~CR~~l~~  189 (242)
                      .++..|+||++.+.+++.+ +|||.||..|+..|+..+..||.||.++..
T Consensus        20 ~~~~~C~IC~~~~~~p~~~~~CgH~fC~~Ci~~~~~~~~~CP~Cr~~~~~   69 (99)
T 2y43_A           20 DDLLRCGICFEYFNIAMIIPQCSHNYCSLCIRKFLSYKTQCPTCCVTVTE   69 (99)
T ss_dssp             HHHTBCTTTCSBCSSEEECTTTCCEEEHHHHHHHHTTCCBCTTTCCBCCG
T ss_pred             CCCCCcccCChhhCCcCEECCCCCHhhHHHHHHHHHCCCCCCCCCCcCCh
Confidence            4568999999999999876 899999999999999999999999999874

>3fl2_A E3 ubiquitin-protein ligase UHRF1; cell cycle, DNA damage, DNA repair, ring finger domain, metal binding, DNA replication; 1.75A {Homo sapiens}

Probab=99.30  E-value=6.2e-13  Score=103.00  Aligned_cols=50  Identities=30%  Similarity=0.658  Sum_probs=44.6

Q ss_pred             CCccCeecccccccccceecCCCCcchHHHHHHHhc-cCCCCcCccccccc
Q 026172          140 IEREEECGICLEICCKIVLPDCNHSMCMRCYRNWRA-RSQSCPFCRDSLRR  189 (242)
Q Consensus       140 ~~~~~~C~ICl~~~~~~v~~~CgH~fC~~Ci~~w~~-~~~~CP~CR~~l~~  189 (242)
                      .+++..|+||++.+.+|+.++|||.||..|+..|+. +...||.||.++..
T Consensus        49 ~~~~~~C~IC~~~~~~p~~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~   99 (124)
T 3fl2_A           49 VEETFQCICCQELVFRPITTVCQHNVCKDCLDRSFRAQVFSCPACRYDLGR   99 (124)
T ss_dssp             HHHHTBCTTTSSBCSSEEECTTSCEEEHHHHHHHHHTTCCBCTTTCCBCCT
T ss_pred             CccCCCCCcCChHHcCcEEeeCCCcccHHHHHHHHhHCcCCCCCCCccCCC
Confidence            346689999999999999999999999999999997 45599999999864

>1x4j_A Ring finger protein 38; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.29  E-value=9.5e-13  Score=93.06  Aligned_cols=50  Identities=22%  Similarity=0.595  Sum_probs=43.8

Q ss_pred             CCccCeecccccccccc---eecCCCCcchHHHHHHHhccCCCCcCccccccc
Q 026172          140 IEREEECGICLEICCKI---VLPDCNHSMCMRCYRNWRARSQSCPFCRDSLRR  189 (242)
Q Consensus       140 ~~~~~~C~ICl~~~~~~---v~~~CgH~fC~~Ci~~w~~~~~~CP~CR~~l~~  189 (242)
                      ..++..|+||++.+..+   +.++|||.||..|+.+|+..+.+||+||+++..
T Consensus        20 ~~~~~~C~IC~~~~~~~~~~~~l~C~H~fh~~Ci~~w~~~~~~CP~Cr~~~~~   72 (75)
T 1x4j_A           20 QSEQTLCVVCMCDFESRQLLRVLPCNHEFHAKCVDKWLKANRTCPICRADSGP   72 (75)
T ss_dssp             SSSCCEETTTTEECCBTCEEEEETTTEEEETTHHHHHHHHCSSCTTTCCCCCC
T ss_pred             cCCCCCCeECCcccCCCCeEEEECCCCHhHHHHHHHHHHcCCcCcCcCCcCCC
Confidence            34668999999998865   667899999999999999989999999998763

>2ep4_A Ring finger protein 24; zinc binding, ubiquitin, E3 enzyme, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.28  E-value=2e-12  Score=91.04  Aligned_cols=52  Identities=23%  Similarity=0.637  Sum_probs=44.0

Q ss_pred             cCCccCeecccccccccce---ecCCCCcchHHHHHHHhccCCCCcCcccccccc
Q 026172          139 DIEREEECGICLEICCKIV---LPDCNHSMCMRCYRNWRARSQSCPFCRDSLRRV  190 (242)
Q Consensus       139 ~~~~~~~C~ICl~~~~~~v---~~~CgH~fC~~Ci~~w~~~~~~CP~CR~~l~~~  190 (242)
                      +...+..|+||++.+..+.   .++|||.||..|+.+|+....+||+||.++...
T Consensus        11 ~~~~~~~C~IC~~~~~~~~~~~~~~C~H~f~~~Ci~~~~~~~~~CP~Cr~~~~~~   65 (74)
T 2ep4_A           11 ELNLHELCAVCLEDFKPRDELGICPCKHAFHRKCLIKWLEVRKVCPLCNMPVLQL   65 (74)
T ss_dssp             CCCCSCBCSSSCCBCCSSSCEEEETTTEEEEHHHHHHHHHHCSBCTTTCCBCSSC
T ss_pred             cCCCCCCCcCCCcccCCCCcEEEcCCCCEecHHHHHHHHHcCCcCCCcCcccccc
Confidence            4456789999999988653   348999999999999999888999999988643

>2ysj_A Tripartite motif-containing protein 31; ring-type zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.28  E-value=2.5e-12  Score=87.81  Aligned_cols=45  Identities=36%  Similarity=0.841  Sum_probs=40.9

Q ss_pred             cCCccCeecccccccccceecCCCCcchHHHHHHHhc---cCCCCcCc
Q 026172          139 DIEREEECGICLEICCKIVLPDCNHSMCMRCYRNWRA---RSQSCPFC  183 (242)
Q Consensus       139 ~~~~~~~C~ICl~~~~~~v~~~CgH~fC~~Ci~~w~~---~~~~CP~C  183 (242)
                      ..+++..|+||++.+.+++.++|||.||..|+.+|+.   ....||+|
T Consensus        16 ~~~~~~~C~IC~~~~~~p~~~~CgH~fC~~Ci~~~~~~~~~~~~CP~C   63 (63)
T 2ysj_A           16 KLQEEVICPICLDILQKPVTIDCGHNFCLKCITQIGETSCGFFKCPLC   63 (63)
T ss_dssp             CCCCCCBCTTTCSBCSSCEECTTSSEECHHHHHHHHHHCSSCCCCSCC
T ss_pred             hCccCCCCCcCCchhCCeEEeCCCCcchHHHHHHHHHcCCCCCcCcCC
Confidence            4567889999999999999999999999999999997   56799998

>2kre_A Ubiquitin conjugation factor E4 B; U-box domain, E3 ubiquitin ligase, E4 polyubiquitin chain EL factor, phosphoprotein, UBL conjugation pathway; NMR {Homo sapiens} PDB: 3l1x_A 3l1z_B

Probab=99.27  E-value=2.6e-12  Score=96.37  Aligned_cols=51  Identities=18%  Similarity=0.055  Sum_probs=47.1

Q ss_pred             cCCccCeecccccccccceecCCCCcchHHHHHHHhccCCCCcCccccccc
Q 026172          139 DIEREEECGICLEICCKIVLPDCNHSMCMRCYRNWRARSQSCPFCRDSLRR  189 (242)
Q Consensus       139 ~~~~~~~C~ICl~~~~~~v~~~CgH~fC~~Ci~~w~~~~~~CP~CR~~l~~  189 (242)
                      ...++..|+||++.+.+||.++|||+||..||.+|+....+||+||.++..
T Consensus        25 ~~p~~~~CpI~~~~m~dPV~~~cGhtf~r~~I~~~l~~~~~cP~~~~~l~~   75 (100)
T 2kre_A           25 DAPDEFRDPLMDTLMTDPVRLPSGTIMDRSIILRHLLNSPTDPFNRQTLTE   75 (100)
T ss_dssp             SCSTTTBCTTTCSBCSSEEEETTTEEEEHHHHHHHTTSCSBCSSSCCBCCT
T ss_pred             cCcHhhCCcCccCcccCCeECCCCCEEchHHHHHHHHcCCCCCCCCCCCCh
Confidence            456789999999999999999999999999999999988999999999874

>2ecl_A Ring-box protein 2; RNF7, ring domian, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.26  E-value=4e-12  Score=91.57  Aligned_cols=49  Identities=27%  Similarity=0.674  Sum_probs=41.7

Q ss_pred             CccCeeccccccccc--------------c-eecCCCCcchHHHHHHHhccCCCCcCccccccc
Q 026172          141 EREEECGICLEICCK--------------I-VLPDCNHSMCMRCYRNWRARSQSCPFCRDSLRR  189 (242)
Q Consensus       141 ~~~~~C~ICl~~~~~--------------~-v~~~CgH~fC~~Ci~~w~~~~~~CP~CR~~l~~  189 (242)
                      .++..|+||++.+.+              + ++++|||.||..||.+|+..+.+||+||.++..
T Consensus        13 ~~~~~C~IC~~~~~~~C~iC~~~~~~~~~~~~~~~C~H~FH~~Ci~~Wl~~~~~CP~CR~~~~~   76 (81)
T 2ecl_A           13 VECDTCAICRVQVMDACLRCQAENKQEDCVVVWGECNHSFHNCCMSLWVKQNNRCPLCQQDWVV   76 (81)
T ss_dssp             CCCSCBTTTTBCTTSCCTTHHHHTCTTTCCEEEETTSCEEEHHHHHHHTTTCCBCTTTCCBCCE
T ss_pred             CCCCCCcccChhhhccCcccccccCCCceEEEeCCCCCccChHHHHHHHHhCCCCCCcCCCcch
Confidence            356789999999865              2 445799999999999999999999999998764

>1g25_A CDK-activating kinase assembly factor MAT1; ring finger (C3HC4), metal binding protein; NMR {Homo sapiens} SCOP: g.44.1.1

Probab=99.26  E-value=2.7e-12  Score=88.19  Aligned_cols=51  Identities=24%  Similarity=0.559  Sum_probs=42.4

Q ss_pred             ccCeeccccc-ccccc----eecCCCCcchHHHHHHHhc-cCCCCcCcccccccccC
Q 026172          142 REEECGICLE-ICCKI----VLPDCNHSMCMRCYRNWRA-RSQSCPFCRDSLRRVNS  192 (242)
Q Consensus       142 ~~~~C~ICl~-~~~~~----v~~~CgH~fC~~Ci~~w~~-~~~~CP~CR~~l~~~~~  192 (242)
                      ++..|+||++ .+.++    +.++|||.||..|+.+|+. ....||.||.++...+.
T Consensus         2 ~~~~C~IC~~~~~~~~~~~~~~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~~~~   58 (65)
T 1g25_A            2 DDQGCPRCKTTKYRNPSLKLMVNVCGHTLCESCVDLLFVRGAGNCPECGTPLRKSNF   58 (65)
T ss_dssp             CTTCCSTTTTHHHHCSSCCEEECTTCCCEEHHHHHHHHHTTSSSCTTTCCCCSSCCC
T ss_pred             CCCcCCcCCCCccCCCccCeecCCCCCHhHHHHHHHHHHcCCCcCCCCCCccccccc
Confidence            4578999999 78777    4689999999999999965 56789999999875433

>1wgm_A Ubiquitin conjugation factor E4A; ubiquitinating enzyme, KIAA0126, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: g.44.1.2

Probab=99.24  E-value=3.8e-12  Score=95.15  Aligned_cols=51  Identities=20%  Similarity=0.134  Sum_probs=47.0

Q ss_pred             cCCccCeecccccccccceecCCC-CcchHHHHHHHhccCCCCcCccccccc
Q 026172          139 DIEREEECGICLEICCKIVLPDCN-HSMCMRCYRNWRARSQSCPFCRDSLRR  189 (242)
Q Consensus       139 ~~~~~~~C~ICl~~~~~~v~~~Cg-H~fC~~Ci~~w~~~~~~CP~CR~~l~~  189 (242)
                      ...+++.|+||++.+.+||.++|| |+||..||.+|+....+||+||.++..
T Consensus        18 ~~p~~~~CpI~~~~m~dPV~~~cG~htf~r~cI~~~l~~~~~cP~~~~~l~~   69 (98)
T 1wgm_A           18 DACDEFLDPIMSTLMCDPVVLPSSRVTVDRSTIARHLLSDQTDPFNRSPLTM   69 (98)
T ss_dssp             SCCTTTBCTTTCSBCSSEEECTTTCCEEEHHHHHHHTTTSCBCTTTCSBCCT
T ss_pred             cCcHhcCCcCccccccCCeECCCCCeEECHHHHHHHHHhCCCCCCCCCCCCh
Confidence            446789999999999999999999 999999999999988999999999874

>1v87_A Deltex protein 2; ring-H2 domain, zinc-binding domain, notch signaling, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: g.44.1.1

Probab=99.24  E-value=4.2e-12  Score=96.67  Aligned_cols=48  Identities=29%  Similarity=0.626  Sum_probs=41.0

Q ss_pred             ccCeecccccccccce------------------ecCCCCcchHHHHHHHh-----ccCCCCcCccccccc
Q 026172          142 REEECGICLEICCKIV------------------LPDCNHSMCMRCYRNWR-----ARSQSCPFCRDSLRR  189 (242)
Q Consensus       142 ~~~~C~ICl~~~~~~v------------------~~~CgH~fC~~Ci~~w~-----~~~~~CP~CR~~l~~  189 (242)
                      .+..|+||++.+..+.                  .++|||.||..||..|+     ....+||+||..+..
T Consensus        24 ~~~~C~ICl~~~~~~~~~~~~~~~~~~~~~~~~~~~~C~H~Fh~~Ci~~wl~~~~~~~~~~CP~CR~~~~~   94 (114)
T 1v87_A           24 PEEDCIICMEKLAVASGYSDMTDSKALGPMVVGRLTKCSHAFHLLCLLAMYCNGNKDGSLQCPSCKTIYGE   94 (114)
T ss_dssp             CSCEETTTTEETTSCCSTTTTCCCSSSCSSCCEEESSSCCEECHHHHHHHHHHTCCSSCCBCTTTCCBSSS
T ss_pred             CCCcCccCChhhcCcccccccccccccCcccceecCCCCCcccHHHHHHHHHcccCCCCCcCCCCCCccCC
Confidence            4569999999986543                  68999999999999999     457899999998863

>2ecj_A Tripartite motif-containing protein 39; TRIM39, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.24  E-value=7.6e-12  Score=83.60  Aligned_cols=45  Identities=33%  Similarity=0.959  Sum_probs=40.2

Q ss_pred             cCCccCeecccccccccceecCCCCcchHHHHHHHh---ccCCCCcCc
Q 026172          139 DIEREEECGICLEICCKIVLPDCNHSMCMRCYRNWR---ARSQSCPFC  183 (242)
Q Consensus       139 ~~~~~~~C~ICl~~~~~~v~~~CgH~fC~~Ci~~w~---~~~~~CP~C  183 (242)
                      ...++..|+||++.+.+++.++|||.||..|+.+|+   .....||+|
T Consensus        11 ~~~~~~~C~IC~~~~~~p~~~~CgH~fC~~Ci~~~~~~~~~~~~CP~C   58 (58)
T 2ecj_A           11 NLQVEASCSVCLEYLKEPVIIECGHNFCKACITRWWEDLERDFPCPVC   58 (58)
T ss_dssp             CSCCCCBCSSSCCBCSSCCCCSSCCCCCHHHHHHHTTSSCCSCCCSCC
T ss_pred             ccccCCCCccCCcccCccEeCCCCCccCHHHHHHHHHhcCCCCCCCCC
Confidence            445778999999999999999999999999999994   467899998

>1jm7_A BRCA1, breast cancer type 1 susceptibility protein; ring finger, zinc-binding protein, heterodimer, ubiquitin ligase, antitumor; NMR {Homo sapiens} SCOP: g.44.1.1

Probab=99.23  E-value=3.6e-12  Score=96.50  Aligned_cols=53  Identities=26%  Similarity=0.693  Sum_probs=45.4

Q ss_pred             ccCeecccccccccceecCCCCcchHHHHHHHhccC---CCCcCcccccccccCCC
Q 026172          142 REEECGICLEICCKIVLPDCNHSMCMRCYRNWRARS---QSCPFCRDSLRRVNSGD  194 (242)
Q Consensus       142 ~~~~C~ICl~~~~~~v~~~CgH~fC~~Ci~~w~~~~---~~CP~CR~~l~~~~~~~  194 (242)
                      +...|+||++.+.+++.++|||.||..|+..|+...   ..||.||.++.......
T Consensus        20 ~~~~C~IC~~~~~~p~~~~CgH~fC~~Ci~~~~~~~~~~~~CP~Cr~~~~~~~~~~   75 (112)
T 1jm7_A           20 KILECPICLELIKEPVSTKCDHIFCKFCMLKLLNQKKGPSQCPLCKNDITKRSLQE   75 (112)
T ss_dssp             HHTSCSSSCCCCSSCCBCTTSCCCCSHHHHHHHHSSSSSCCCTTTSCCCCTTTCBC
T ss_pred             CCCCCcccChhhcCeEECCCCCHHHHHHHHHHHHhCCCCCCCcCCCCcCCHhhcCc
Confidence            457899999999999999999999999999999854   49999999987544333

>4ap4_A E3 ubiquitin ligase RNF4; ligase-signalling protein complex, chimera; 2.21A {Rattus norvegicus}

Probab=99.22  E-value=4.1e-12  Score=98.42  Aligned_cols=57  Identities=26%  Similarity=0.712  Sum_probs=48.9

Q ss_pred             CccCeecccccccccc-------eecCCCCcchHHHHHHHhccCCCCcCcccccccccCCCccc
Q 026172          141 EREEECGICLEICCKI-------VLPDCNHSMCMRCYRNWRARSQSCPFCRDSLRRVNSGDLWI  197 (242)
Q Consensus       141 ~~~~~C~ICl~~~~~~-------v~~~CgH~fC~~Ci~~w~~~~~~CP~CR~~l~~~~~~~~~~  197 (242)
                      .++.+|+||++.+.++       +.++|||.||..|+.+|+..+.+||+||.++.......++.
T Consensus         5 ~~~~~C~IC~~~~~~~~~~~~~~~~~~CgH~fc~~Ci~~~~~~~~~CP~Cr~~~~~~~l~~l~i   68 (133)
T 4ap4_A            5 SGTVSCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLKNANTCPTCRKKINHKRYHPIYI   68 (133)
T ss_dssp             CCSCBCTTTCCBHHHHHHTTCCEEEETTCCEEEHHHHHHHHTTCSBCTTTCCBCTTTCEEECBC
T ss_pred             CCCCCCcccChhhhCccccccCeEecCCCChhhHHHHHHHHHhCCCCCCCCCcCcccccccccc
Confidence            3668999999999987       88999999999999999999999999999987555444433

>1z6u_A NP95-like ring finger protein isoform B; structural genomics consortium, ligase, ubiquitin-protein ligase, cell cycle regulation, SGC; 2.10A {Homo sapiens}

Probab=99.21  E-value=4.7e-12  Score=101.64  Aligned_cols=51  Identities=29%  Similarity=0.637  Sum_probs=45.3

Q ss_pred             CCccCeecccccccccceecCCCCcchHHHHHHHhccC-CCCcCcccccccc
Q 026172          140 IEREEECGICLEICCKIVLPDCNHSMCMRCYRNWRARS-QSCPFCRDSLRRV  190 (242)
Q Consensus       140 ~~~~~~C~ICl~~~~~~v~~~CgH~fC~~Ci~~w~~~~-~~CP~CR~~l~~~  190 (242)
                      ..++..|+||++.+.+|+.++|||.||..|+..|+... ..||+||.++...
T Consensus        75 l~~~~~C~IC~~~~~~pv~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~~  126 (150)
T 1z6u_A           75 LEQSFMCVCCQELVYQPVTTECFHNVCKDCLQRSFKAQVFSCPACRHDLGQN  126 (150)
T ss_dssp             HHHHTBCTTTSSBCSSEEECTTSCEEEHHHHHHHHHTTCCBCTTTCCBCCTT
T ss_pred             CccCCEeecCChhhcCCEEcCCCCchhHHHHHHHHHhCCCcCCCCCccCCCC
Confidence            44678999999999999999999999999999999854 5999999998743

>3l11_A E3 ubiquitin-protein ligase RNF168; E3 ligase, ring domain, DNA damage, chromatin regulator, CHR protein, DNA repair, metal-binding, nucleus; 2.12A {Homo sapiens}

Probab=99.19  E-value=2.5e-12  Score=98.22  Aligned_cols=50  Identities=38%  Similarity=0.883  Sum_probs=45.1

Q ss_pred             CCccCeecccccccccceecCCCCcchHHHHHHHhcc-CCCCcCccccccc
Q 026172          140 IEREEECGICLEICCKIVLPDCNHSMCMRCYRNWRAR-SQSCPFCRDSLRR  189 (242)
Q Consensus       140 ~~~~~~C~ICl~~~~~~v~~~CgH~fC~~Ci~~w~~~-~~~CP~CR~~l~~  189 (242)
                      ..++..|+||++.+.+|+.++|||.||..|+.+|+.. ...||.||.++..
T Consensus        12 ~~~~~~C~iC~~~~~~p~~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~   62 (115)
T 3l11_A           12 SLSECQCGICMEILVEPVTLPCNHTLCKPCFQSTVEKASLCCPFCRRRVSS   62 (115)
T ss_dssp             CHHHHBCTTTCSBCSSCEECTTSCEECHHHHCCCCCTTTSBCTTTCCBCHH
T ss_pred             CCCCCCCccCCcccCceeEcCCCCHHhHHHHHHHHhHCcCCCCCCCcccCc
Confidence            3467899999999999999999999999999999975 7899999999863

>3hct_A TNF receptor-associated factor 6; cross-brace, beta-BETA-alpha, coiled coil, cytoplasm, metal- binding, UBL conjugation, UBL conjugation pathway; 2.10A {Homo sapiens} PDB: 3hcu_A 2eci_A 2jmd_A

Probab=99.18  E-value=8.7e-12  Score=95.82  Aligned_cols=51  Identities=27%  Similarity=0.558  Sum_probs=45.6

Q ss_pred             cCCccCeecccccccccceecCCCCcchHHHHHHHhccC-CCCcCccccccc
Q 026172          139 DIEREEECGICLEICCKIVLPDCNHSMCMRCYRNWRARS-QSCPFCRDSLRR  189 (242)
Q Consensus       139 ~~~~~~~C~ICl~~~~~~v~~~CgH~fC~~Ci~~w~~~~-~~CP~CR~~l~~  189 (242)
                      ..+++..|+||++.+.+++.++|||.||..|+.+|+..+ .+||.||.++..
T Consensus        14 ~~~~~~~C~IC~~~~~~p~~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~   65 (118)
T 3hct_A           14 PLESKYECPICLMALREAVQTPCGHRFCKACIIKSIRDAGHKCPVDNEILLE   65 (118)
T ss_dssp             CCCGGGBCTTTCSBCSSEEECTTSCEEEHHHHHHHHHHHCSBCTTTCCBCCG
T ss_pred             CCCCCCCCCcCChhhcCeEECCcCChhhHHHHHHHHhhCCCCCCCCCCCcCH
Confidence            556778999999999999999999999999999999854 499999998863

>1e4u_A Transcriptional repressor NOT4; gene regulation, transcriptional control; NMR {Homo sapiens} SCOP: g.44.1.1 PDB: 1ur6_B

Probab=99.17  E-value=2.5e-11  Score=87.01  Aligned_cols=52  Identities=27%  Similarity=0.597  Sum_probs=42.3

Q ss_pred             cCCccCeecccccccc--cceecC--CCCcchHHHHHHHhc-cCCCCcCcccccccc
Q 026172          139 DIEREEECGICLEICC--KIVLPD--CNHSMCMRCYRNWRA-RSQSCPFCRDSLRRV  190 (242)
Q Consensus       139 ~~~~~~~C~ICl~~~~--~~v~~~--CgH~fC~~Ci~~w~~-~~~~CP~CR~~l~~~  190 (242)
                      ..+++..|+||++.+.  ++...+  |||.||..|+.+++. ....||.||.++...
T Consensus         7 ~~~~~~~CpICle~~~~~d~~~~p~~CGH~fC~~Cl~~~~~~~~~~CP~CR~~~~~~   63 (78)
T 1e4u_A            7 AKEDPVECPLCMEPLEIDDINFFPCTCGYQICRFCWHRIRTDENGLCPACRKPYPED   63 (78)
T ss_dssp             CCCCCCBCTTTCCBCCTTTTTCCSSTTSCCCCHHHHHHHTTSSCSBCTTTCCBCSSC
T ss_pred             ccccCCcCCccCccCccccccccccCCCCCcCHHHHHHHHhcCCCCCCCCCCccCCC
Confidence            4567889999999885  344444  999999999999874 578999999998743

>1rmd_A RAG1; V(D)J recombination, antibody, MAD, ring finger, zinc binuclear cluster, zinc finger, DNA-binding protein; 2.10A {Mus musculus} SCOP: g.37.1.1 g.44.1.1

Probab=99.16  E-value=8.9e-12  Score=95.28  Aligned_cols=50  Identities=26%  Similarity=0.513  Sum_probs=45.2

Q ss_pred             CCccCeecccccccccceecCCCCcchHHHHHHHhcc-CCCCcCccccccc
Q 026172          140 IEREEECGICLEICCKIVLPDCNHSMCMRCYRNWRAR-SQSCPFCRDSLRR  189 (242)
Q Consensus       140 ~~~~~~C~ICl~~~~~~v~~~CgH~fC~~Ci~~w~~~-~~~CP~CR~~l~~  189 (242)
                      ..++..|+||++.+.+|+.++|||.||..|+.+|+.. ...||.||.++..
T Consensus        20 ~~~~~~C~IC~~~~~~p~~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~   70 (116)
T 1rmd_A           20 FVKSISCQICEHILADPVETSCKHLFCRICILRCLKVMGSYCPSCRYPCFP   70 (116)
T ss_dssp             HHHHTBCTTTCSBCSSEEECTTSCEEEHHHHHHHHHHTCSBCTTTCCBCCG
T ss_pred             ccCCCCCCCCCcHhcCcEEcCCCCcccHHHHHHHHhHCcCcCCCCCCCCCH
Confidence            3456899999999999999999999999999999985 7899999999874

>2ckl_B Ubiquitin ligase protein RING2; BMI1, RING1B, polycomb, E3-ligase, nuclear protein, chromosomal protein, transcription regulation; 2.0A {Mus musculus} PDB: 3rpg_C 2h0d_B

Probab=99.15  E-value=9.3e-12  Score=100.95  Aligned_cols=49  Identities=29%  Similarity=0.697  Sum_probs=44.1

Q ss_pred             CCccCeecccccccccceec-CCCCcchHHHHHHHhcc-CCCCcCcccccc
Q 026172          140 IEREEECGICLEICCKIVLP-DCNHSMCMRCYRNWRAR-SQSCPFCRDSLR  188 (242)
Q Consensus       140 ~~~~~~C~ICl~~~~~~v~~-~CgH~fC~~Ci~~w~~~-~~~CP~CR~~l~  188 (242)
                      ..++..|+||++.+.+++.+ +|||.||..|+..|+.. ...||.||.++.
T Consensus        51 ~~~~~~C~IC~~~~~~p~~~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~  101 (165)
T 2ckl_B           51 LHSELMCPICLDMLKNTMTTKECLHRFCADCIITALRSGNKECPTCRKKLV  101 (165)
T ss_dssp             CHHHHBCTTTSSBCSSEEEETTTCCEEEHHHHHHHHHTTCCBCTTTCCBCC
T ss_pred             CCCCCCCcccChHhhCcCEeCCCCChhHHHHHHHHHHhCcCCCCCCCCcCC
Confidence            34667999999999999876 99999999999999986 889999999985

>3dpl_R Ring-box protein 1; ubiquitin, NEDD8, cullin, HOST-virus interaction, receptor, UBL conjugation, UBL conjugation pathway, acetylation, cytoplasm; 2.60A {Homo sapiens} SCOP: g.44.1.1 PDB: 3dqv_R 3rtr_B 4f52_B 1u6g_B 2hye_D* 4a0c_D 4a0l_F* 1ldj_B 1ldk_C 2lgv_A

Probab=99.13  E-value=3.2e-11  Score=91.35  Aligned_cols=47  Identities=23%  Similarity=0.613  Sum_probs=41.5

Q ss_pred             ccCeecccccccccc------------------eecCCCCcchHHHHHHHhccCCCCcCcccccc
Q 026172          142 REEECGICLEICCKI------------------VLPDCNHSMCMRCYRNWRARSQSCPFCRDSLR  188 (242)
Q Consensus       142 ~~~~C~ICl~~~~~~------------------v~~~CgH~fC~~Ci~~w~~~~~~CP~CR~~l~  188 (242)
                      ++..|+||++.+..+                  +.++|+|.||..||.+|+..+.+||+||+++.
T Consensus        36 ~~d~CaIC~~~~~~~c~~C~~~~~~~~~~~~~~~~~~C~H~FH~~Ci~~Wl~~~~~CP~Cr~~~~  100 (106)
T 3dpl_R           36 VVDNCAICRNHIMDLCIECQANQASATSEECTVAWGVCNHAFHFHCISRWLKTRQVCPLDNREWE  100 (106)
T ss_dssp             CSCCCSSSCSCTTSCCTTHHHHTTCC---CCCEEEETTSCEEEHHHHHHHHTTCSBCSSSCSBCC
T ss_pred             CCCCCccCChhHhCcCchhhccccccCCccceEeecccCcEECHHHHHHHHHcCCcCcCCCCcce
Confidence            567899999998754                  44799999999999999999999999999864

>1jm7_B BARD1, BRCA1-associated ring domain protein 1; ring finger, zinc-binding protein, heterodimer, ubiquitin ligase, antitumor; NMR {Homo sapiens} SCOP: g.44.1.1

Probab=99.13  E-value=5.6e-12  Score=96.73  Aligned_cols=47  Identities=26%  Similarity=0.588  Sum_probs=42.9

Q ss_pred             CccCeecccccccccceec-CCCCcchHHHHHHHhccCCCCcCccccccc
Q 026172          141 EREEECGICLEICCKIVLP-DCNHSMCMRCYRNWRARSQSCPFCRDSLRR  189 (242)
Q Consensus       141 ~~~~~C~ICl~~~~~~v~~-~CgH~fC~~Ci~~w~~~~~~CP~CR~~l~~  189 (242)
                      .++..|+||++.+.+|+.+ +|||+||..|+..|+.  ..||.||.++..
T Consensus        20 ~~~~~C~IC~~~~~~pv~~~~CgH~fC~~Ci~~~~~--~~CP~Cr~~~~~   67 (117)
T 1jm7_B           20 EKLLRCSRCTNILREPVCLGGCEHIFCSNCVSDCIG--TGCPVCYTPAWI   67 (117)
T ss_dssp             HHTTSCSSSCSCCSSCBCCCSSSCCBCTTTGGGGTT--TBCSSSCCBCSC
T ss_pred             hhCCCCCCCChHhhCccEeCCCCCHHHHHHHHHHhc--CCCcCCCCcCcc
Confidence            4568999999999999988 9999999999999987  899999999864

>1bor_A Transcription factor PML; proto-oncogene, nuclear bodies (PODS), leukemia, transcription regulation; NMR {Homo sapiens} SCOP: g.44.1.1

Probab=99.12  E-value=1.3e-11  Score=82.65  Aligned_cols=46  Identities=22%  Similarity=0.464  Sum_probs=41.0

Q ss_pred             CccCeecccccccccceecCCCCcchHHHHHHHhccCCCCcCccccccc
Q 026172          141 EREEECGICLEICCKIVLPDCNHSMCMRCYRNWRARSQSCPFCRDSLRR  189 (242)
Q Consensus       141 ~~~~~C~ICl~~~~~~v~~~CgH~fC~~Ci~~w~~~~~~CP~CR~~l~~  189 (242)
                      .++..|+||++.+.+++.++|||+||..|+..|   ...||+||.++..
T Consensus         4 ~~~~~C~IC~~~~~~p~~l~CgH~fC~~Ci~~~---~~~CP~Cr~~~~~   49 (56)
T 1bor_A            4 FQFLRCQQCQAEAKCPKLLPCLHTLCSGCLEAS---GMQCPICQAPWPL   49 (56)
T ss_dssp             CCCSSCSSSCSSCBCCSCSTTSCCSBTTTCSSS---SSSCSSCCSSSSC
T ss_pred             ccCCCceEeCCccCCeEEcCCCCcccHHHHccC---CCCCCcCCcEeec
Confidence            466889999999999999999999999999774   6799999998763

>3knv_A TNF receptor-associated factor 2; cross-brace, alternative splicing, apoptosis, cytoplasm, metal-binding, UBL conjugation, zinc, zinc-finger; 1.90A {Homo sapiens}

Probab=99.11  E-value=1.7e-11  Score=97.47  Aligned_cols=50  Identities=20%  Similarity=0.484  Sum_probs=45.1

Q ss_pred             cCCccCeecccccccccceecCCCCcchHHHHHHHhccC-CCCcCcccccc
Q 026172          139 DIEREEECGICLEICCKIVLPDCNHSMCMRCYRNWRARS-QSCPFCRDSLR  188 (242)
Q Consensus       139 ~~~~~~~C~ICl~~~~~~v~~~CgH~fC~~Ci~~w~~~~-~~CP~CR~~l~  188 (242)
                      ..+++..|+||++.+.+|+.++|||.||..|+.+|+... ..||.||.++.
T Consensus        27 ~l~~~~~C~IC~~~~~~pv~~~CgH~FC~~Ci~~~~~~~~~~CP~Cr~~~~   77 (141)
T 3knv_A           27 KLEAKYLCSACRNVLRRPFQAQCGHRYCSFCLASILSSGPQNCAACVHEGI   77 (141)
T ss_dssp             GCCGGGBCTTTCSBCSSEEECTTSCEEEHHHHHHHGGGSCEECHHHHHTTC
T ss_pred             cCCcCcCCCCCChhhcCcEECCCCCccCHHHHHHHHhcCCCCCCCCCCccc
Confidence            556789999999999999999999999999999999854 59999999864

>2vje_A E3 ubiquitin-protein ligase MDM2; proto-oncogene, phosphorylation, alternative splicing, HOST-virus interaction, UBL conjugation pathway, zinc-finger, polymorphism; HET: FLC; 2.20A {Homo sapiens} PDB: 2vjf_A* 2hdp_A

Probab=99.11  E-value=2e-11  Score=84.03  Aligned_cols=49  Identities=24%  Similarity=0.604  Sum_probs=44.1

Q ss_pred             CccCeecccccccccceec--CCCCc-chHHHHHHHhccCCCCcCccccccc
Q 026172          141 EREEECGICLEICCKIVLP--DCNHS-MCMRCYRNWRARSQSCPFCRDSLRR  189 (242)
Q Consensus       141 ~~~~~C~ICl~~~~~~v~~--~CgH~-fC~~Ci~~w~~~~~~CP~CR~~l~~  189 (242)
                      +++.+|.||++...+++.+  +|||. ||..|+..|...+..||+||+++..
T Consensus         6 ~~~~~C~IC~~~~~~~~~~~~pCgH~~~C~~C~~~~~~~~~~CPiCR~~i~~   57 (64)
T 2vje_A            6 NAIEPCVICQGRPKNGCIVHGKTGHLMACFTCAKKLKKRNKPCPVCRQPIQM   57 (64)
T ss_dssp             GGGSCCTTTSSSCSCEEEEETTEEEEEECHHHHHHHHHTTCCCTTTCCCCCE
T ss_pred             CCcCCCCcCCCCCCCEEEECCCCCChhhHHHHHHHHHHcCCcCCCcCcchhc
Confidence            3567899999999999876  99999 8999999999988999999999864

>4ap4_A E3 ubiquitin ligase RNF4; ligase-signalling protein complex, chimera; 2.21A {Rattus norvegicus}

Probab=99.08  E-value=2.5e-11  Score=93.91  Aligned_cols=51  Identities=27%  Similarity=0.751  Sum_probs=45.5

Q ss_pred             CccCeecccccccccc-------eecCCCCcchHHHHHHHhccCCCCcCccccccccc
Q 026172          141 EREEECGICLEICCKI-------VLPDCNHSMCMRCYRNWRARSQSCPFCRDSLRRVN  191 (242)
Q Consensus       141 ~~~~~C~ICl~~~~~~-------v~~~CgH~fC~~Ci~~w~~~~~~CP~CR~~l~~~~  191 (242)
                      ++...|+||++.+.++       +.++|||.||..|+.+|+..+++||+||.++...+
T Consensus        70 ~~~~~C~iC~~~~~~~~~~~~~~~~~~CgH~fc~~Ci~~~~~~~~~CP~Cr~~~~~~~  127 (133)
T 4ap4_A           70 SGTVSCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLKNANTCPTCRKKINHKR  127 (133)
T ss_dssp             SSSCBCTTTCCBHHHHHHTTCCEEEETTSBEEEHHHHHHHHHHCSBCTTTCCBCCGGG
T ss_pred             CCCCCCCCCCCccccccccCcceEeCCCCChhhHHHHHHHHHcCCCCCCCCCcCChhc
Confidence            4668899999999876       78899999999999999999999999999987543

>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2

Probab=99.08  E-value=3.3e-11  Score=104.40  Aligned_cols=51  Identities=16%  Similarity=0.119  Sum_probs=45.3

Q ss_pred             cCCccCeecccccccccceecCCCCcchHHHHHHHhcc-CCCCcCccccccc
Q 026172          139 DIEREEECGICLEICCKIVLPDCNHSMCMRCYRNWRAR-SQSCPFCRDSLRR  189 (242)
Q Consensus       139 ~~~~~~~C~ICl~~~~~~v~~~CgH~fC~~Ci~~w~~~-~~~CP~CR~~l~~  189 (242)
                      +..++..|+||++.+.+||.++|||+||..||..|+.. +.+||+||.++..
T Consensus       204 ~~~~~~~c~i~~~~~~dPv~~~~gh~f~~~~i~~~~~~~~~~cP~~~~~~~~  255 (281)
T 2c2l_A          204 DIPDYLCGKISFELMREPCITPSGITYDRKDIEEHLQRVGHFNPVTRSPLTQ  255 (281)
T ss_dssp             CCCSTTBCTTTCSBCSSEEECSSCCEEETTHHHHHHHHTCSSCTTTCCCCCG
T ss_pred             CCCcccCCcCcCCHhcCCeECCCCCEECHHHHHHHHHHCCCCCcCCCCCCch
Confidence            44577999999999999999999999999999999984 4569999999864

>4ic3_A E3 ubiquitin-protein ligase XIAP; ring domain, zinc-finger, E3 ligase; 1.78A {Homo sapiens} PDB: 4ic2_A

Probab=99.07  E-value=1.8e-11  Score=86.62  Aligned_cols=44  Identities=30%  Similarity=0.745  Sum_probs=40.7

Q ss_pred             ccCeecccccccccceecCCCCc-chHHHHHHHhccCCCCcCccccccc
Q 026172          142 REEECGICLEICCKIVLPDCNHS-MCMRCYRNWRARSQSCPFCRDSLRR  189 (242)
Q Consensus       142 ~~~~C~ICl~~~~~~v~~~CgH~-fC~~Ci~~w~~~~~~CP~CR~~l~~  189 (242)
                      ++..|+||++.+.+++.++|||. ||..|+..|    ..||+||.++..
T Consensus        23 ~~~~C~iC~~~~~~~~~~pCgH~~~C~~C~~~~----~~CP~Cr~~i~~   67 (74)
T 4ic3_A           23 EEKLCKICMDRNIAIVFVPCGHLVTCKQCAEAV----DKCPMCYTVITF   67 (74)
T ss_dssp             HHTBCTTTSSSBCCEEEETTCCBCCCHHHHTTC----SBCTTTCCBCSE
T ss_pred             cCCCCCCCCCCCCCEEEcCCCChhHHHHhhhcC----ccCCCcCcCccC
Confidence            55789999999999999999999 999999998    899999999874

>2f42_A STIP1 homology and U-box containing protein 1; chaperone; 2.50A {Danio rerio} PDB: 2c2v_S 2oxq_C

Probab=99.07  E-value=2.5e-10  Score=94.13  Aligned_cols=51  Identities=14%  Similarity=0.097  Sum_probs=45.8

Q ss_pred             cCCccCeecccccccccceecCCCCcchHHHHHHHhcc-CCCCcCccccccc
Q 026172          139 DIEREEECGICLEICCKIVLPDCNHSMCMRCYRNWRAR-SQSCPFCRDSLRR  189 (242)
Q Consensus       139 ~~~~~~~C~ICl~~~~~~v~~~CgH~fC~~Ci~~w~~~-~~~CP~CR~~l~~  189 (242)
                      ...+++.|+||++.+.+||.++|||+||..||..|+.. +.+||+|+.++..
T Consensus       102 ~ip~~f~CPI~~elm~DPV~~~~Ghtfer~~I~~~l~~~~~tcP~t~~~l~~  153 (179)
T 2f42_A          102 EIPDYLCGKISFELMREPCITPSGITYDRKDIEEHLQRVGHFDPVTRSPLTQ  153 (179)
T ss_dssp             CCCGGGBCTTTCSBCSSEEECTTSCEEEHHHHHHHHHHTCSBCTTTCCBCCG
T ss_pred             CCcHhhcccCccccCCCCeECCCCCEECHHHHHHHHHhCCCCCCCCcCCCCh
Confidence            45678999999999999999999999999999999975 4579999998874

>2vje_B MDM4 protein; proto-oncogene, phosphorylation, alternative splicing, HOST-virus interaction, UBL conjugation pathway, zinc-finger, polymorphism; HET: FLC; 2.20A {Homo sapiens} PDB: 2vjf_B*

Probab=99.07  E-value=4.3e-11  Score=82.10  Aligned_cols=49  Identities=20%  Similarity=0.537  Sum_probs=43.3

Q ss_pred             CccCeecccccccccceec--CCCCc-chHHHHHHHhccCCCCcCccccccc
Q 026172          141 EREEECGICLEICCKIVLP--DCNHS-MCMRCYRNWRARSQSCPFCRDSLRR  189 (242)
Q Consensus       141 ~~~~~C~ICl~~~~~~v~~--~CgH~-fC~~Ci~~w~~~~~~CP~CR~~l~~  189 (242)
                      +.+..|.||++...+++++  ||||. ||..|+.+|...+..||+||.++..
T Consensus         5 ~~~~~C~IC~~~~~~~~~~~~pCgH~~~C~~C~~~~~~~~~~CPiCR~~i~~   56 (63)
T 2vje_B            5 NLLKPCSLCEKRPRDGNIIHGRTGHLVTCFHCARRLKKAGASCPICKKEIQL   56 (63)
T ss_dssp             GGGSBCTTTSSSBSCEEEEETTEEEEEECHHHHHHHHHTTCBCTTTCCBCCE
T ss_pred             CcCCCCcccCCcCCCeEEEecCCCCHhHHHHHHHHHHHhCCcCCCcCchhhc
Confidence            3557899999999988766  99998 9999999999888999999999864

>2yu4_A E3 SUMO-protein ligase NSE2; SP-ring domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.05  E-value=4.8e-11  Score=88.24  Aligned_cols=49  Identities=22%  Similarity=0.303  Sum_probs=42.5

Q ss_pred             CCccCeecccccccccceecC-CCCcchHHHHHHHhcc------CCCCcC--cccc-cc
Q 026172          140 IEREEECGICLEICCKIVLPD-CNHSMCMRCYRNWRAR------SQSCPF--CRDS-LR  188 (242)
Q Consensus       140 ~~~~~~C~ICl~~~~~~v~~~-CgH~fC~~Ci~~w~~~------~~~CP~--CR~~-l~  188 (242)
                      ..+++.|+||++.+.+||.++ |||+||..||..|+..      ..+||+  |+.. +.
T Consensus         4 ~~~~~~CPI~~~~~~dPV~~~~cGh~f~r~cI~~~l~~~~~~~~~~~CP~tgc~~~~l~   62 (94)
T 2yu4_A            4 GSSGFTCPITKEEMKKPVKNKVCGHTYEEDAIVRMIESRQKRKKKAYCPQIGCSHTDIR   62 (94)
T ss_dssp             CSSCCBCTTTCSBCSSEEEESSSCCEEEHHHHHHHHHHHHTTTCCBCCCSTTCCCCCBC
T ss_pred             CCcEeECcCcCchhcCCEEcCCCCCeecHHHHHHHHHHccCcCCCCCCCcCcCcccccC
Confidence            356789999999999999985 9999999999999974      369999  9866 55

>2y1n_A E3 ubiquitin-protein ligase; ligase-transferase complex, ubiquitin ring E3 ligase; HET: PTR; 2.00A {Homo sapiens} PDB: 2y1m_A* 4a4c_A* 4a4b_A* 1fbv_A* 3vgo_A 4a49_A* 2k4d_A 2ldr_A*

Probab=99.02  E-value=1.5e-10  Score=105.73  Aligned_cols=49  Identities=33%  Similarity=0.845  Sum_probs=44.8

Q ss_pred             ccCeecccccccccceecCCCCcchHHHHHHHhc-cCCCCcCcccccccc
Q 026172          142 REEECGICLEICCKIVLPDCNHSMCMRCYRNWRA-RSQSCPFCRDSLRRV  190 (242)
Q Consensus       142 ~~~~C~ICl~~~~~~v~~~CgH~fC~~Ci~~w~~-~~~~CP~CR~~l~~~  190 (242)
                      ....|+||++.+.+++.++|||.||..|+..|.. ...+||+||.++...
T Consensus       331 ~~~~C~ICle~~~~pv~lpCGH~FC~~Ci~~wl~~~~~~CP~CR~~i~~~  380 (389)
T 2y1n_A          331 TFQLCKICAENDKDVKIEPCGHLMCTSCLTSWQESEGQGCPFCRCEIKGT  380 (389)
T ss_dssp             SSSBCTTTSSSBCCEEEETTCCEECHHHHHHHHHHTCSBCTTTCCBCCEE
T ss_pred             CCCCCCccCcCCCCeEEeCCCChhhHHHHHHHHhcCCCCCCCCCCccCCc
Confidence            3478999999999999999999999999999998 789999999998754

>3hcs_A TNF receptor-associated factor 6; cross-brace, beta-BETA-alpha, coiled coil, cytoplasm, metal- binding, UBL conjugation, UBL conjugation pathway; 2.20A {Homo sapiens}

Probab=98.98  E-value=1.8e-10  Score=93.69  Aligned_cols=51  Identities=27%  Similarity=0.553  Sum_probs=45.7

Q ss_pred             cCCccCeecccccccccceecCCCCcchHHHHHHHhcc-CCCCcCccccccc
Q 026172          139 DIEREEECGICLEICCKIVLPDCNHSMCMRCYRNWRAR-SQSCPFCRDSLRR  189 (242)
Q Consensus       139 ~~~~~~~C~ICl~~~~~~v~~~CgH~fC~~Ci~~w~~~-~~~CP~CR~~l~~  189 (242)
                      ..+++..|+||++.+.+|+.++|||+||..|+.+|+.. ..+||.||.++..
T Consensus        14 ~~~~~~~C~IC~~~~~~pv~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~   65 (170)
T 3hcs_A           14 PLESKYECPICLMALREAVQTPCGHRFCKACIIKSIRDAGHKCPVDNEILLE   65 (170)
T ss_dssp             CCCGGGBCTTTCSBCSSEEECTTSCEEEHHHHHHHHHHHCSBCTTTCCBCCG
T ss_pred             CCCCCCCCCCCChhhcCcEECCCCCHHHHHHHHHHHHhCCCCCCCCccCcch
Confidence            55678999999999999999999999999999999874 4599999998864

>2ecg_A Baculoviral IAP repeat-containing protein 4; BIRC4, ring domian, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=98.94  E-value=1.6e-10  Score=81.80  Aligned_cols=44  Identities=30%  Similarity=0.757  Sum_probs=39.1

Q ss_pred             ccCeecccccccccceecCCCCc-chHHHHHHHhccCCCCcCccccccc
Q 026172          142 REEECGICLEICCKIVLPDCNHS-MCMRCYRNWRARSQSCPFCRDSLRR  189 (242)
Q Consensus       142 ~~~~C~ICl~~~~~~v~~~CgH~-fC~~Ci~~w~~~~~~CP~CR~~l~~  189 (242)
                      ++..|+||++.+.+++.++|||. ||..|+..    ...||+||.++..
T Consensus        24 ~~~~C~IC~~~~~~~~~~pCgH~~~C~~C~~~----~~~CP~Cr~~i~~   68 (75)
T 2ecg_A           24 EEKLCKICMDRNIAIVFVPCGHLVTCKQCAEA----VDKCPMCYTVITF   68 (75)
T ss_dssp             HHHSCSSSCSSCCCBCCSSSCCCCBCHHHHHH----CSBCTTTCCBCCC
T ss_pred             CCCCCCcCCCCCCCEEEecCCCHHHHHHHhhC----CCCCccCCceecC
Confidence            44689999999999999999999 99999965    3899999999864

>4a0k_B E3 ubiquitin-protein ligase RBX1; ligase-DNA-binding protein-DNA complex, DNA-binding protein- complex; HET: DNA 3DR; 5.93A {Mus musculus}

Probab=98.91  E-value=1.5e-10  Score=89.18  Aligned_cols=47  Identities=23%  Similarity=0.613  Sum_probs=1.1

Q ss_pred             ccCeecccccccccc------------------eecCCCCcchHHHHHHHhccCCCCcCcccccc
Q 026172          142 REEECGICLEICCKI------------------VLPDCNHSMCMRCYRNWRARSQSCPFCRDSLR  188 (242)
Q Consensus       142 ~~~~C~ICl~~~~~~------------------v~~~CgH~fC~~Ci~~w~~~~~~CP~CR~~l~  188 (242)
                      .+..|+||++.+.++                  +.++|+|.||..||.+|+..+.+||+||+++.
T Consensus        47 ~~d~CaICl~~~~~~c~~C~~~~~~~~~~~~~v~~~~C~H~FH~~CI~~Wl~~~~~CP~Cr~~~~  111 (117)
T 4a0k_B           47 VVDNCAICRNHIMDLCIECQANQASATSEECTVAWGVCNHAFHFHCISRWLKTRQVCPLDNREWE  111 (117)
T ss_dssp             CC---------------------------------------------------------------
T ss_pred             CCCcCeECChhhcCcChhhhcccccccccccccccCCcCceEcHHHHHHHHHcCCcCCCCCCeee
Confidence            457899999998752                  23589999999999999999999999999864

>2ea5_A Cell growth regulator with ring finger domain protein 1; CGRRF1, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=98.84  E-value=1.4e-09  Score=75.72  Aligned_cols=45  Identities=31%  Similarity=0.804  Sum_probs=40.4

Q ss_pred             CccCeecccccccccceecCCCCc-chHHHHHHHhccCCCCcCccccccc
Q 026172          141 EREEECGICLEICCKIVLPDCNHS-MCMRCYRNWRARSQSCPFCRDSLRR  189 (242)
Q Consensus       141 ~~~~~C~ICl~~~~~~v~~~CgH~-fC~~Ci~~w~~~~~~CP~CR~~l~~  189 (242)
                      +++..|.||++...+++++||||. ||..|+..    ...||+||.++..
T Consensus        13 ~~~~~C~IC~~~~~~~v~~pCgH~~~C~~C~~~----~~~CP~CR~~i~~   58 (68)
T 2ea5_A           13 ENSKDCVVCQNGTVNWVLLPCRHTCLCDGCVKY----FQQCPMCRQFVQE   58 (68)
T ss_dssp             CCSSCCSSSSSSCCCCEETTTTBCCSCTTHHHH----CSSCTTTCCCCCC
T ss_pred             CCCCCCCCcCcCCCCEEEECCCChhhhHHHHhc----CCCCCCCCcchhc
Confidence            456899999999999999999999 99999984    4899999999874

>2yho_A E3 ubiquitin-protein ligase mylip; ligase, E2 ligase-E3 ligase complex, ring zinc-finger, UBL conjugation pathway; 2.10A {Homo sapiens} PDB: 2yhn_A

Probab=98.83  E-value=6.1e-10  Score=79.79  Aligned_cols=45  Identities=31%  Similarity=0.696  Sum_probs=40.2

Q ss_pred             ccCeecccccccccceecCCCCc-chHHHHHHHhccCCCCcCcccccccc
Q 026172          142 REEECGICLEICCKIVLPDCNHS-MCMRCYRNWRARSQSCPFCRDSLRRV  190 (242)
Q Consensus       142 ~~~~C~ICl~~~~~~v~~~CgH~-fC~~Ci~~w~~~~~~CP~CR~~l~~~  190 (242)
                      ++..|+||++.+.+++.++|||. ||..|+..|    ..||+||.++...
T Consensus        17 ~~~~C~IC~~~~~~~v~~pCgH~~~C~~C~~~~----~~CP~Cr~~i~~~   62 (79)
T 2yho_A           17 EAMLCMVCCEEEINSTFCPCGHTVCCESCAAQL----QSCPVCRSRVEHV   62 (79)
T ss_dssp             HHTBCTTTSSSBCCEEEETTCBCCBCHHHHTTC----SBCTTTCCBCCEE
T ss_pred             CCCEeEEeCcccCcEEEECCCCHHHHHHHHHhc----CcCCCCCchhhCe
Confidence            45689999999999999999999 999999887    4999999998753

>2d8s_A Cellular modulator of immune recognition; C-MIR, march8, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=98.83  E-value=1.6e-09  Score=77.84  Aligned_cols=49  Identities=20%  Similarity=0.554  Sum_probs=40.8

Q ss_pred             CCccCeecccccccc--cceecCCC-----CcchHHHHHHHhccC--CCCcCcccccc
Q 026172          140 IEREEECGICLEICC--KIVLPDCN-----HSMCMRCYRNWRARS--QSCPFCRDSLR  188 (242)
Q Consensus       140 ~~~~~~C~ICl~~~~--~~v~~~Cg-----H~fC~~Ci~~w~~~~--~~CP~CR~~l~  188 (242)
                      ..++..|.||++.+.  +++.++|+     |.||..|+.+|+..+  .+||+||..+.
T Consensus        12 ~~~~~~C~IC~~~~~~~~~l~~pC~C~Gs~h~fH~~Cl~~Wl~~~~~~~CplCr~~~~   69 (80)
T 2d8s_A           12 PSSQDICRICHCEGDDESPLITPCHCTGSLHFVHQACLQQWIKSSDTRCCELCKYEFI   69 (80)
T ss_dssp             CTTSCCCSSSCCCCCSSSCEECSSSCCSSSCCEETTHHHHHHHHHCCSBCSSSCCBCC
T ss_pred             CCCCCCCeEcCccccCCCeeEeccccCCcCCeeCHHHHHHHHhhCCCCCCCCCCCeee
Confidence            346679999998875  45668896     999999999999854  69999999876

>3htk_C E3 SUMO-protein ligase MMS21; SUMO E3 ligase, SPL-ring, ring, ATP-binding, chromosomal protein, coiled coil, DNA damage; 2.31A {Saccharomyces cerevisiae}

Probab=98.82  E-value=1.4e-09  Score=94.14  Aligned_cols=54  Identities=19%  Similarity=0.321  Sum_probs=45.4

Q ss_pred             cCCccCeeccccccccccee-cCCCCcchHHHHHHHhcc--CCCCcC--cccccccccC
Q 026172          139 DIEREEECGICLEICCKIVL-PDCNHSMCMRCYRNWRAR--SQSCPF--CRDSLRRVNS  192 (242)
Q Consensus       139 ~~~~~~~C~ICl~~~~~~v~-~~CgH~fC~~Ci~~w~~~--~~~CP~--CR~~l~~~~~  192 (242)
                      ....+..||||++.+.+||. ..|||+||..||.+|+..  ...||.  ||..+...+.
T Consensus       177 ~~~~el~CPIcl~~f~DPVts~~CGHsFcR~cI~~~~~~~~~~~CPvtGCr~~l~~~dL  235 (267)
T 3htk_C          177 GGKIELTCPITCKPYEAPLISRKCNHVFDRDGIQNYLQGYTTRDCPQAACSQVVSMRDF  235 (267)
T ss_dssp             SSBCCSBCTTTSSBCSSEEEESSSCCEEEHHHHHHHSTTCSCEECSGGGCSCEECGGGE
T ss_pred             CCceeeECcCccCcccCCeeeCCCCCcccHHHHHHHHHhCCCCCCCcccccCcCchhhC
Confidence            34567899999999999997 499999999999999874  468999  9998764433

>2ct0_A Non-SMC element 1 homolog; ring domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=98.75  E-value=8.8e-09  Score=72.87  Aligned_cols=49  Identities=20%  Similarity=0.522  Sum_probs=41.2

Q ss_pred             CccCeecccccccccce-ecCCCCcchHHHHHHHhccC--CCCcCccccccc
Q 026172          141 EREEECGICLEICCKIV-LPDCNHSMCMRCYRNWRARS--QSCPFCRDSLRR  189 (242)
Q Consensus       141 ~~~~~C~ICl~~~~~~v-~~~CgH~fC~~Ci~~w~~~~--~~CP~CR~~l~~  189 (242)
                      +...+|+||.+.+.... ...|+|.||..|+.+|+..+  .+||+||.+...
T Consensus        13 ~~i~~C~IC~~~i~~g~~C~~C~h~fH~~Ci~kWl~~~~~~~CP~Cr~~w~~   64 (74)
T 2ct0_A           13 DAVKICNICHSLLIQGQSCETCGIRMHLPCVAKYFQSNAEPRCPHCNDYWPH   64 (74)
T ss_dssp             SSSCBCSSSCCBCSSSEECSSSCCEECHHHHHHHSTTCSSCCCTTTCSCCCS
T ss_pred             CCCCcCcchhhHcccCCccCCCCchhhHHHHHHHHHhcCCCCCCCCcCcCCC
Confidence            45578999999988543 45899999999999999866  899999988763

>3t6p_A Baculoviral IAP repeat-containing protein 2; ring, BIR, CARD, UBA, apoptosis, ubiquitin ligase, SMAC/ ubiquitin, caspase, IAP family, SMAC mimetic; 1.90A {Homo sapiens} PDB: 1qbh_A 2l9m_A 3eb5_A 3eb6_A 4auq_B

Probab=98.65  E-value=2.9e-09  Score=96.23  Aligned_cols=46  Identities=26%  Similarity=0.828  Sum_probs=41.5

Q ss_pred             CccCeecccccccccceecCCCCc-chHHHHHHHhccCCCCcCcccccccc
Q 026172          141 EREEECGICLEICCKIVLPDCNHS-MCMRCYRNWRARSQSCPFCRDSLRRV  190 (242)
Q Consensus       141 ~~~~~C~ICl~~~~~~v~~~CgH~-fC~~Ci~~w~~~~~~CP~CR~~l~~~  190 (242)
                      +++..|+||++.+.+++.++|||. ||..|+..|    ..||+||.++...
T Consensus       293 ~~~~~C~IC~~~~~~~v~lpCgH~~fC~~C~~~~----~~CP~CR~~i~~~  339 (345)
T 3t6p_A          293 QEERTCKVCMDKEVSVVFIPCGHLVVCQECAPSL----RKCPICRGIIKGT  339 (345)
T ss_dssp             HTTCBCTTTSSSBCCEEEETTCCEEECTTTGGGC----SBCTTTCCBCCEE
T ss_pred             cCCCCCCccCCcCCceEEcCCCChhHhHHHHhcC----CcCCCCCCCccCe
Confidence            456899999999999999999999 999999988    7999999998743

>2bay_A PRE-mRNA splicing factor PRP19; U-BOX, ubiquitin ligase, E3 ligase; 1.50A {Saccharomyces cerevisiae} SCOP: g.44.1.2 PDB: 1n87_A

Probab=98.65  E-value=8.1e-09  Score=70.33  Aligned_cols=47  Identities=13%  Similarity=0.142  Sum_probs=43.1

Q ss_pred             Ceecccccccccceec-CCCCcchHHHHHHHhccCCCCcCcccccccc
Q 026172          144 EECGICLEICCKIVLP-DCNHSMCMRCYRNWRARSQSCPFCRDSLRRV  190 (242)
Q Consensus       144 ~~C~ICl~~~~~~v~~-~CgH~fC~~Ci~~w~~~~~~CP~CR~~l~~~  190 (242)
                      ..|+||++.+.+|+.. +|||+|+..||.+|+..+.+||+.+.++...
T Consensus         4 ~~CpIs~~~m~dPV~~~~sG~~yer~~I~~~l~~~~~cP~t~~~L~~~   51 (61)
T 2bay_A            4 MLCAISGKVPRRPVLSPKSRTIFEKSLLEQYVKDTGNDPITNEPLSIE   51 (61)
T ss_dssp             CCCTTTCSCCSSEEEETTTTEEEEHHHHHHHHHHHSBCTTTCCBCCGG
T ss_pred             EEecCCCCCCCCCEEeCCCCcEEcHHHHHHHHHhCCCCcCCcCCCChh
Confidence            6799999999999998 9999999999999998778899999998744

>1wim_A KIAA0161 protein; ring finger domain, UBCM4-interacting protein 4, UIP4, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: g.44.1.1

Probab=98.58  E-value=1.9e-08  Score=73.87  Aligned_cols=45  Identities=22%  Similarity=0.592  Sum_probs=37.2

Q ss_pred             ccCeeccccccccccee---cCCCCcchHHHHHHHhcc--------CCCCcC--cccc
Q 026172          142 REEECGICLEICCKIVL---PDCNHSMCMRCYRNWRAR--------SQSCPF--CRDS  186 (242)
Q Consensus       142 ~~~~C~ICl~~~~~~v~---~~CgH~fC~~Ci~~w~~~--------~~~CP~--CR~~  186 (242)
                      +..+|+||++.+..+..   .+|||.||..|+.+++..        ...||.  |+..
T Consensus         4 ~~~~C~IC~~~~~~~~~~~l~~CgH~FC~~Cl~~~~~~~i~~g~~~~i~CP~~~C~~~   61 (94)
T 1wim_A            4 GSSGCKLCLGEYPVEQMTTIAQCQCIFCTLCLKQYVELLIKEGLETAISCPDAACPKQ   61 (94)
T ss_dssp             SBCCCSSSCCCCBGGGEEEETTTTEEEEHHHHHHHHHHHHHHCSCCCEECSCTTCSSC
T ss_pred             CCcCCcccCcccccccceEcCCCCCcccHHHHHHHHHHHhhcCCcccccCccccCCCC
Confidence            56789999999887644   379999999999998751        358999  9987

>1vyx_A ORF K3, K3RING; zinc-binding protein, ring domain, cross-brace motif; NMR {Human herpesvirus 8} SCOP: g.44.1.3

Probab=98.34  E-value=4.2e-07  Score=61.52  Aligned_cols=48  Identities=23%  Similarity=0.510  Sum_probs=39.3

Q ss_pred             CccCeecccccccccceecCCC--C---cchHHHHHHHhc--cCCCCcCcccccc
Q 026172          141 EREEECGICLEICCKIVLPDCN--H---SMCMRCYRNWRA--RSQSCPFCRDSLR  188 (242)
Q Consensus       141 ~~~~~C~ICl~~~~~~v~~~Cg--H---~fC~~Ci~~w~~--~~~~CP~CR~~l~  188 (242)
                      +++..|.||++...++...||.  |   .||..|+.+|+.  ++.+||+|+.++.
T Consensus         4 ~~~~~CrIC~~~~~~~l~~PC~C~gs~~~~H~~Cl~~W~~~~~~~~C~~C~~~~~   58 (60)
T 1vyx_A            4 EDVPVCWICNEELGNERFRACGCTGELENVHRSCLSTWLTISRNTACQICGVVYN   58 (60)
T ss_dssp             CSCCEETTTTEECSCCCCCSCCCSSGGGSCCHHHHHHHHHHHTCSBCTTTCCBCC
T ss_pred             CCCCEeEEeecCCCCceecCcCCCCchhhhHHHHHHHHHHhCCCCccCCCCCeee
Confidence            4667899999886666667765  4   799999999987  4789999998764

>3k1l_B Fancl; UBC, ring, RWD, ligase; HET: MAL CIT; 3.20A {Drosophila melanogaster}

Probab=98.34  E-value=8.2e-08  Score=85.99  Aligned_cols=48  Identities=25%  Similarity=0.599  Sum_probs=39.0

Q ss_pred             CccCeeccccccccc-ce-------ecCCCCcchHHHHHHHhccC-----------CCCcCcccccc
Q 026172          141 EREEECGICLEICCK-IV-------LPDCNHSMCMRCYRNWRARS-----------QSCPFCRDSLR  188 (242)
Q Consensus       141 ~~~~~C~ICl~~~~~-~v-------~~~CgH~fC~~Ci~~w~~~~-----------~~CP~CR~~l~  188 (242)
                      +...+|+||++.+.+ ..       .+.|||.||..|+.+|+...           .+||.||++++
T Consensus       306 e~~~ECaICys~~l~~g~lPdk~C~n~~C~h~FH~~CL~kWLrs~~~sRqSFnvi~G~CPyCr~pIs  372 (381)
T 3k1l_B          306 NEELRCNICFAYRLDGGEVPLVSCDNAKCVLKCHAVCLEEWFKTLMDGKTFLEVSFGQCPFCKAKLS  372 (381)
T ss_dssp             CSCCSCSSSCCSSCTTCCCCCBCCSCTTCCCCBCSGGGHHHHHHHHSSSCTTTCCEEECTTTCCEEE
T ss_pred             cCCccCcccceeecCCCCCccccccCCccCCccchHHHHHHHHhCCCccccccccCCCCCCCCCcCC
Confidence            456799999998775 21       24899999999999999732           57999999987

>3vk6_A E3 ubiquitin-protein ligase hakai; HYB, phosphotyrosine binding domain; 1.90A {Mus musculus}

Probab=98.18  E-value=9.3e-07  Score=65.43  Aligned_cols=48  Identities=23%  Similarity=0.486  Sum_probs=39.7

Q ss_pred             eeccccccccc-ceecCCCCcchHHHHHHHhc-cCCCCcCcccccccccC
Q 026172          145 ECGICLEICCK-IVLPDCNHSMCMRCYRNWRA-RSQSCPFCRDSLRRVNS  192 (242)
Q Consensus       145 ~C~ICl~~~~~-~v~~~CgH~fC~~Ci~~w~~-~~~~CP~CR~~l~~~~~  192 (242)
                      .|++|--.+.. ....||+|+||.+|+..|.. +.++||.|+.++.++..
T Consensus         3 fC~~C~~Pi~iygRmIPCkHvFCydCa~~~~~~~~k~Cp~C~~~V~rVe~   52 (101)
T 3vk6_A            3 FCDKCGLPIKVYGRMIPCKHVFCYDCAILHEKKGDKMCPGCSDPVQRIEQ   52 (101)
T ss_dssp             BCTTTCSBCSEEEEEETTCCEEEHHHHHHHHHTTCCBCTTTCCBCSEEEE
T ss_pred             ecCccCCCeEEEeeeccccccHHHHHHHHHHhccCCCCcCcCCeeeeeEE
Confidence            58888888774 45678999999999999975 67999999999985543

>3nw0_A Non-structural maintenance of chromosomes element homolog; E3 ligase, Zn, metal binding protein; 2.92A {Homo sapiens}

Probab=97.35  E-value=0.00015  Score=62.05  Aligned_cols=49  Identities=20%  Similarity=0.487  Sum_probs=40.1

Q ss_pred             ccCeecccccccccce-ecCCCCcchHHHHHHHhcc--CCCCcCcccccccc
Q 026172          142 REEECGICLEICCKIV-LPDCNHSMCMRCYRNWRAR--SQSCPFCRDSLRRV  190 (242)
Q Consensus       142 ~~~~C~ICl~~~~~~v-~~~CgH~fC~~Ci~~w~~~--~~~CP~CR~~l~~~  190 (242)
                      .-..|.||.+...... ..+|+|.||..|+..|+..  +..||.|+.+.+..
T Consensus       179 ~i~~C~iC~~iv~~g~~C~~C~~~~H~~C~~~~~~~~~~~~CP~C~~~W~~~  230 (238)
T 3nw0_A          179 AVKICNICHSLLIQGQSCETCGIRMHLPCVAKYFQSNAEPRCPHCNDYWPHE  230 (238)
T ss_dssp             TCCBCTTTCSBCSSCEECSSSCCEECHHHHHHHTTTCSSCBCTTTCCBCCSC
T ss_pred             CCCcCcchhhHHhCCcccCccChHHHHHHHHHHHHhCCCCCCCCCCCCCCCC
Confidence            3578999999988654 4679999999999999874  45999998876543

>2jun_A Midline-1; B-BOX, TRIM, ring finger, alternative splicing, coiled coil, cytoplasm, cytoskeleton, disease mutation, ligase, metal-binding; NMR {Homo sapiens}

Probab=96.16  E-value=0.0031  Score=46.05  Aligned_cols=33  Identities=21%  Similarity=0.439  Sum_probs=27.3

Q ss_pred             ccCeecccccc-ccccee--cCCCCcchHHHHHHHh
Q 026172          142 REEECGICLEI-CCKIVL--PDCNHSMCMRCYRNWR  174 (242)
Q Consensus       142 ~~~~C~ICl~~-~~~~v~--~~CgH~fC~~Ci~~w~  174 (242)
                      ++..|+||.+. +.+++.  +.|+|.||..|+..+.
T Consensus         2 ee~~C~~C~~~~~~~av~~C~~C~~~~C~~Cl~~~h   37 (101)
T 2jun_A            2 EKVLCQFCDQDPAQDAVKTCVTCEVSYCDECLKATH   37 (101)
T ss_dssp             CCCBCTTCCSSSCCBCCEEETTTTEEECHHHHHHHS
T ss_pred             CCCCCcCCCCCCCCCceEECCcCChHHhHHHCHHHh
Confidence            45789999975 566766  8999999999999843

>3m62_A Ubiquitin conjugation factor E4; armadillo-like repeats, UBL conjugation pathway, DNA damage, nucleus, phosphoprotein; HET: 1PE; 2.40A {Saccharomyces cerevisiae} PDB: 3m63_A* 2qiz_A 2qj0_A

Probab=92.63  E-value=0.095  Score=52.70  Aligned_cols=52  Identities=15%  Similarity=0.092  Sum_probs=46.6

Q ss_pred             cCCccCeecccccccccceecCCC-CcchHHHHHHHhccCCCCcCcccccccc
Q 026172          139 DIEREEECGICLEICCKIVLPDCN-HSMCMRCYRNWRARSQSCPFCRDSLRRV  190 (242)
Q Consensus       139 ~~~~~~~C~ICl~~~~~~v~~~Cg-H~fC~~Ci~~w~~~~~~CP~CR~~l~~~  190 (242)
                      +..++..|||-.+.+.+||.++.| ++|=..+|.+|+..+.+||+=|.+++..
T Consensus       887 ~iP~~F~cPIs~~lM~DPVilpsG~~TydR~~I~~wl~~~~tdP~Tr~~L~~~  939 (968)
T 3m62_A          887 DVPDEFLDPLMYTIMKDPVILPASKMNIDRSTIKAHLLSDSTDPFNRMPLKLE  939 (968)
T ss_dssp             CSCGGGBCTTTCSBCSSEEECTTTCCEEEHHHHHHHHTTCCBCTTTCCBCCGG
T ss_pred             CCcHHhCCcchhhHHhCCeEcCCCCEEECHHHHHHHHhcCCCCCCCCCCCCcc
Confidence            456789999999999999999997 6999999999999889999999988743

>2lri_C Autoimmune regulator; Zn binding protein domain, apeced, transcription; NMR {Homo sapiens}

Probab=89.32  E-value=0.34  Score=32.78  Aligned_cols=46  Identities=17%  Similarity=0.408  Sum_probs=33.5

Q ss_pred             ccCeecccccccccceecCCCCcchHHHHHHHhc----cCCCCcCccccc
Q 026172          142 REEECGICLEICCKIVLPDCNHSMCMRCYRNWRA----RSQSCPFCRDSL  187 (242)
Q Consensus       142 ~~~~C~ICl~~~~~~v~~~CgH~fC~~Ci~~w~~----~~~~CP~CR~~l  187 (242)
                      ....|.||.+.-.-...-.|...||..|+...+.    ....||.|....
T Consensus        11 ~~~~C~vC~~~~~ll~Cd~C~~~~H~~Cl~P~l~~~P~g~W~C~~C~~~~   60 (66)
T 2lri_C           11 PGARCGVCGDGTDVLRCTHCAAAFHWRCHFPAGTSRPGTGLRCRSCSGDV   60 (66)
T ss_dssp             TTCCCTTTSCCTTCEECSSSCCEECHHHHCTTTCCCCSSSCCCTTTTTCC
T ss_pred             CCCCcCCCCCCCeEEECCCCCCceecccCCCccCcCCCCCEECccccCCC
Confidence            4567999987543223347899999999987665    467999997643

>1weo_A Cellulose synthase, catalytic subunit (IRX3); structure genomics, ring-finger, riken structural genomics/proteomics initiative, RSGI; NMR {Arabidopsis thaliana} SCOP: g.44.1.1

Probab=85.77  E-value=1.2  Score=32.01  Aligned_cols=49  Identities=27%  Similarity=0.700  Sum_probs=37.2

Q ss_pred             ccCeeccccccccc-----c--eecCCCCcchHHHHHH-HhccCCCCcCcccccccc
Q 026172          142 REEECGICLEICCK-----I--VLPDCNHSMCMRCYRN-WRARSQSCPFCRDSLRRV  190 (242)
Q Consensus       142 ~~~~C~ICl~~~~~-----~--v~~~CgH~fC~~Ci~~-w~~~~~~CP~CR~~l~~~  190 (242)
                      ....|.||-+..-.     +  ..-.|+-..|..|++- ..+.++.||-|+...++.
T Consensus        15 ~~qiCqiCGD~VG~~~~Ge~FVAC~eC~FPvCrpCyEYErkeG~q~CpqCktrYkr~   71 (93)
T 1weo_A           15 DGQFCEICGDQIGLTVEGDLFVACNECGFPACRPCYEYERREGTQNCPQCKTRYKRL   71 (93)
T ss_dssp             SSCBCSSSCCBCCBCSSSSBCCSCSSSCCCCCHHHHHHHHHTSCSSCTTTCCCCCCC
T ss_pred             CCCccccccCccccCCCCCEEEeeeccCChhhHHHHHHHHhccCccccccCCccccc
Confidence            44689999998541     1  2346888899999966 455899999999998754

>2cs3_A Protein C14ORF4, MY039 protein; ZF-C3HC4 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.44.1.3

Probab=85.39  E-value=0.64  Score=32.74  Aligned_cols=35  Identities=26%  Similarity=0.515  Sum_probs=28.5

Q ss_pred             CccCeecccccccccceecCC----CCcchHHHHHHHhc
Q 026172          141 EREEECGICLEICCKIVLPDC----NHSMCMRCYRNWRA  175 (242)
Q Consensus       141 ~~~~~C~ICl~~~~~~v~~~C----gH~fC~~Ci~~w~~  175 (242)
                      ...+.|.+|.+.+++.....|    .|.||.-|-+....
T Consensus        13 ~a~l~CtlC~erLEdtHFVQCPsv~~HkFCFpCsr~sIk   51 (93)
T 2cs3_A           13 SGPLCCTICHERLEDTHFVQCPSVPSHKFCFPCSRESIK   51 (93)
T ss_dssp             CCSCCCSSSCSCCSSTTSEECSSCSSCEECHHHHHHHHH
T ss_pred             CCeeEeecchhhhccCceeeCCCccCCeeeccccHHHHH
Confidence            456899999999998754444    79999999988876

>3u5n_A E3 ubiquitin-protein ligase TRIM33; TRIM33, PHD, bromodomain, TGF-beta, epigenetics, methylation, K9ME3, K14AC, transcription; HET: M3L ALY; 1.95A {Homo sapiens} PDB: 3u5m_A* 3u5o_A* 3u5p_A*

Probab=81.96  E-value=0.53  Score=38.73  Aligned_cols=47  Identities=21%  Similarity=0.413  Sum_probs=33.2

Q ss_pred             CccCeecccccccccceecCCCCcchHHHHHHHhc----cCCCCcCccccc
Q 026172          141 EREEECGICLEICCKIVLPDCNHSMCMRCYRNWRA----RSQSCPFCRDSL  187 (242)
Q Consensus       141 ~~~~~C~ICl~~~~~~v~~~CgH~fC~~Ci~~w~~----~~~~CP~CR~~l  187 (242)
                      ..+..|.+|...-.-...-.|...||..|+.+-+.    +...||.|+..-
T Consensus         5 ~~~~~C~~C~~~g~ll~Cd~C~~~~H~~Cl~p~l~~~p~~~W~C~~C~~~~   55 (207)
T 3u5n_A            5 PNEDWCAVCQNGGDLLCCEKCPKVFHLTCHVPTLLSFPSGDWICTFCRDIG   55 (207)
T ss_dssp             SSCSSBTTTCCCEEEEECSSSSCEECTTTSSSCCSSCCSSCCCCTTTSCSS
T ss_pred             CCCCCCCCCCCCCceEEcCCCCCccCCccCCCCCCCCCCCCEEeCceeCcc
Confidence            35567999986543223346888999999876544    467999998653

>2l5u_A Chromodomain-helicase-DNA-binding protein 4; CHD4, MI2B, MI2-beta, PHD, protein binding, peptide binding metal binding protein; NMR {Homo sapiens}

Probab=81.23  E-value=1.1  Score=29.44  Aligned_cols=47  Identities=21%  Similarity=0.504  Sum_probs=32.6

Q ss_pred             cCCccCeecccccccccceecCCCCcchHHHHHHHhc----cCCCCcCccc
Q 026172          139 DIEREEECGICLEICCKIVLPDCNHSMCMRCYRNWRA----RSQSCPFCRD  185 (242)
Q Consensus       139 ~~~~~~~C~ICl~~~~~~v~~~CgH~fC~~Ci~~w~~----~~~~CP~CR~  185 (242)
                      +...+..|.+|...-.-...-.|...||..|+..-+.    ....||.|+.
T Consensus         7 ~~~~~~~C~vC~~~g~ll~CD~C~~~fH~~Cl~p~l~~~p~g~W~C~~C~~   57 (61)
T 2l5u_A            7 ETDHQDYCEVCQQGGEIILCDTCPRAYHMVCLDPDMEKAPEGKWSCPHCEK   57 (61)
T ss_dssp             SSCCCSSCTTTSCCSSEEECSSSSCEEEHHHHCTTCCSCCCSSCCCTTGGG
T ss_pred             cCCCCCCCccCCCCCcEEECCCCChhhhhhccCCCCCCCCCCceECccccc
Confidence            3446678999987432222346888999999976433    5678999964

>1wil_A KIAA1045 protein; ring finger domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Homo sapiens} SCOP: g.50.1.3

Probab=80.28  E-value=2.1  Score=30.41  Aligned_cols=44  Identities=20%  Similarity=0.545  Sum_probs=30.6

Q ss_pred             CCccCeeccccccccccee--cCCCCcchHHHHHHHhc----------------cCCCCcCc
Q 026172          140 IEREEECGICLEICCKIVL--PDCNHSMCMRCYRNWRA----------------RSQSCPFC  183 (242)
Q Consensus       140 ~~~~~~C~ICl~~~~~~v~--~~CgH~fC~~Ci~~w~~----------------~~~~CP~C  183 (242)
                      ...+..|.||--.-.....  --|+-+||..|+++--.                ...+||.|
T Consensus        12 ~~~D~~C~VC~~~t~~~l~pCRvC~RvfH~~CL~r~gy~~~~~a~e~~l~A~T~~GWSC~~C   73 (89)
T 1wil_A           12 VVNDEMCDVCEVWTAESLFPCRVCTRVFHDGCLRRMGYIQGDSAAEVTEMAHTETGWSCHYC   73 (89)
T ss_dssp             CCCSCCCTTTCCCCSSCCSSCSSSSSCCCHHHHHHHTSCCCCCCCSCSCCCSSSSSCCCTTT
T ss_pred             CCCCcccCccccccccceeccccccccccHhhcccccccccHHHHHHHHccCCCCCcccccc
Confidence            3467889999854433222  23789999999998611                35699999

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	242
d1fbva4	79	g.44.1.1 (A:356-434) CBL {Human (Homo sapiens) [Ta	3e-09
d1chca_	68	g.44.1.1 (A:) Immediate early protein, IEEHV {Equi	4e-09
d1iyma_	55	g.44.1.1 (A:) EL5 RING-H2 domain {Rice (Oryza sati	9e-09
d1rmda2	86	g.44.1.1 (A:1-86) V(D)J recombination activating p	1e-07
d1jm7a_	103	g.44.1.1 (A:) brca1 RING domain {Human (Homo sapie	8e-07
d1bora_	56	g.44.1.1 (A:) Acute promyelocytic leukaemia proto-	1e-06
d1g25a_	65	g.44.1.1 (A:) TFIIH Mat1 subunit {Human (Homo sapi	4e-06
d3dplr1	88	g.44.1.1 (R:19-106) RIGG-box protein 1 (RBX1) of S	8e-06
d1jm7b_	97	g.44.1.1 (B:) bard1 RING domain {Human (Homo sapie	5e-05
d1t1ha_	78	g.44.1.2 (A:) E3 ubiquitin ligase PUB14 {Thale-cre	2e-04
d2baya1	56	g.44.1.2 (A:1-56) Pre-mRNA splicing factor Prp19 {	2e-04
d1v87a_	114	g.44.1.1 (A:) Deltex protein 2 RING-H2 domain {Mou	2e-04
d1ur6b_	52	g.44.1.1 (B:) Not-4 N-terminal RING finger domain	0.002
d1wgma_	98	g.44.1.2 (A:) Ubiquitin conjugation factor E4A {Hu	0.004

>d1fbva4 g.44.1.1 (A:356-434) CBL {Human (Homo sapiens) [TaxId: 9606]} Length = 79

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: RING finger domain, C3HC4
domain: CBL
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 50.4 bits (120), Expect = 3e-09
 Identities = 16/50 (32%), Positives = 23/50 (46%), Gaps = 1/50 (2%)

Query: 144 EECGICLEICCKIVLPDCNHSMCMRCYRNW-RARSQSCPFCRDSLRRVNS 192
           + C IC E    + +  C H MC  C  +W  +  Q CPFCR  ++    
Sbjct: 24  QLCKICAENDKDVKIEPCGHLMCTSCLTSWQESEGQGCPFCRCEIKGTEP 73

>d1chca_ g.44.1.1 (A:) Immediate early protein, IEEHV {Equine herpesvirus 1 [TaxId: 10326]} Length = 68

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: RING finger domain, C3HC4
domain: Immediate early protein, IEEHV
species: Equine herpesvirus 1 [TaxId: 10326]

 Score = 49.6 bits (118), Expect = 4e-09
 Identities = 15/48 (31%), Positives = 22/48 (45%), Gaps = 1/48 (2%)

Query: 144 EECGICLE-ICCKIVLPDCNHSMCMRCYRNWRARSQSCPFCRDSLRRV 190
           E C ICLE      +   C H+ C  C   W  ++ +CP C+  +  V
Sbjct: 6   ERCPICLEDPSNYSMALPCLHAFCYVCITRWIRQNPTCPLCKVPVESV 53

>d1iyma_ g.44.1.1 (A:) EL5 RING-H2 domain {Rice (Oryza sativa) [TaxId: 4530]} Length = 55

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: RING finger domain, C3HC4
domain: EL5 RING-H2 domain
species: Rice (Oryza sativa) [TaxId: 4530]

 Score = 48.3 bits (115), Expect = 9e-09
 Identities = 14/52 (26%), Positives = 20/52 (38%), Gaps = 4/52 (7%)

Query: 140 IEREEECGICLEICCK----IVLPDCNHSMCMRCYRNWRARSQSCPFCRDSL 187
           ++   EC +CL           LP C H     C   W     +CP CR ++
Sbjct: 2   MDDGVECAVCLAELEDGEEARFLPRCGHGFHAECVDMWLGSHSTCPLCRLTV 53

>d1rmda2 g.44.1.1 (A:1-86) V(D)J recombination activating protein 1 (RAG1), dimerization domain {Mouse (Mus musculus) [TaxId: 10090]} Length = 86

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: RING finger domain, C3HC4
domain: V(D)J recombination activating protein 1 (RAG1), dimerization domain
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 46.1 bits (109), Expect = 1e-07
 Identities = 14/52 (26%), Positives = 16/52 (30%), Gaps = 1/52 (1%)

Query: 139 DIEREEECGICLEICCKIVLPDCNHSMCMRC-YRNWRARSQSCPFCRDSLRR 189
              +   C IC  I    V   C H  C  C  R  +     CP CR     
Sbjct: 19  HFVKSISCQICEHILADPVETSCKHLFCRICILRCLKVMGSYCPSCRYPCFP 70

>d1jm7a_ g.44.1.1 (A:) brca1 RING domain {Human (Homo sapiens) [TaxId: 9606]} Length = 103

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: RING finger domain, C3HC4
domain: brca1 RING domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 44.3 bits (104), Expect = 8e-07
 Identities = 14/54 (25%), Positives = 26/54 (48%), Gaps = 3/54 (5%)

Query: 139 DIEREEECGICLEICCKIVLPDCNHSMCMRCYRNWRARSQ---SCPFCRDSLRR 189
            +++  EC ICLE+  + V   C+H  C  C      + +    CP C++ + +
Sbjct: 17  AMQKILECPICLELIKEPVSTKCDHIFCKFCMLKLLNQKKGPSQCPLCKNDITK 70

>d1bora_ g.44.1.1 (A:) Acute promyelocytic leukaemia proto-oncoprotein PML {Human (Homo sapiens) [TaxId: 9606]} Length = 56

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: RING finger domain, C3HC4
domain: Acute promyelocytic leukaemia proto-oncoprotein PML
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 42.2 bits (99), Expect = 1e-06
 Identities = 10/44 (22%), Positives = 13/44 (29%), Gaps = 3/44 (6%)

Query: 145 ECGICLEICCKIVLPDCNHSMCMRCYRNWRARSQSCPFCRDSLR 188
            C  C        L  C H++C  C          CP C+    
Sbjct: 8   RCQQCQAEAKCPKLLPCLHTLCSGCLEAS---GMQCPICQAPWP 48

>d1g25a_ g.44.1.1 (A:) TFIIH Mat1 subunit {Human (Homo sapiens) [TaxId: 9606]} Length = 65

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: RING finger domain, C3HC4
domain: TFIIH Mat1 subunit
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 41.3 bits (96), Expect = 4e-06
 Identities = 13/55 (23%), Positives = 23/55 (41%), Gaps = 6/55 (10%)

Query: 143 EEECGICLEIC-----CKIVLPDCNHSMCMRCYRNWRA-RSQSCPFCRDSLRRVN 191
           ++ C  C          K+++  C H++C  C        + +CP C   LR+ N
Sbjct: 3   DQGCPRCKTTKYRNPSLKLMVNVCGHTLCESCVDLLFVRGAGNCPECGTPLRKSN 57

>d3dplr1 g.44.1.1 (R:19-106) RIGG-box protein 1 (RBX1) of SCF ubiquitin ligase complex {Human (Homo sapiens) [TaxId: 9606]} Length = 88

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: RING finger domain, C3HC4
domain: RIGG-box protein 1 (RBX1) of SCF ubiquitin ligase complex
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 40.9 bits (95), Expect = 8e-06
 Identities = 12/60 (20%), Positives = 15/60 (25%), Gaps = 18/60 (30%)

Query: 143 EEECGICLEIC------------------CKIVLPDCNHSMCMRCYRNWRARSQSCPFCR 184
            + C IC                      C +    CNH+    C   W    Q CP   
Sbjct: 21  VDNCAICRNHIMDLCIECQANQASATSEECTVAWGVCNHAFHFHCISRWLKTRQVCPLDN 80

>d1jm7b_ g.44.1.1 (B:) bard1 RING domain {Human (Homo sapiens) [TaxId: 9606]} Length = 97

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: RING finger domain, C3HC4
domain: bard1 RING domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 39.0 bits (90), Expect = 5e-05
 Identities = 20/91 (21%), Positives = 30/91 (32%), Gaps = 6/91 (6%)

Query: 127 KGRMDKGKLSEIDIEREEECGICLE-ICCKIVLPDCNHSMCMRCYRNWRARSQSCPFCRD 185
           +G     + +   +E+   C  C   +   + L  C H  C  C  +       CP C  
Sbjct: 6   RGAWAHSRAALDRLEKLLRCSRCTNILREPVCLGGCEHIFCSNCVSDC--IGTGCPVCY- 62

Query: 186 SLRRVNSGDLWIYTSEDDIVDLASISRENLK 216
                   DL I    D ++ L S  R  L 
Sbjct: 63  --TPAWIQDLKINRQLDSMIQLCSKLRNLLH 91

>d1t1ha_ g.44.1.2 (A:) E3 ubiquitin ligase PUB14 {Thale-cress (Arabidopsis thaliana) [TaxId: 3702]} Length = 78

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: U-box
domain: E3 ubiquitin ligase PUB14
species: Thale-cress (Arabidopsis thaliana) [TaxId: 3702]

 Score = 37.0 bits (85), Expect = 2e-04
 Identities = 6/46 (13%), Positives = 11/46 (23%)

Query: 139 DIEREEECGICLEICCKIVLPDCNHSMCMRCYRNWRARSQSCPFCR 184
           +      C I LE+    V+     +      + W           
Sbjct: 4   EFPEYFRCPISLELMKDPVIVSTGQTYERSSIQKWLDAGHKTCPKS 49

>d2baya1 g.44.1.2 (A:1-56) Pre-mRNA splicing factor Prp19 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 56

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: U-box
domain: Pre-mRNA splicing factor Prp19
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 36.3 bits (83), Expect = 2e-04
 Identities = 5/44 (11%), Positives = 13/44 (29%), Gaps = 1/44 (2%)

Query: 146 CGICLEI-CCKIVLPDCNHSMCMRCYRNWRARSQSCPFCRDSLR 188
           C I  ++    ++ P             +   + + P   + L 
Sbjct: 3   CAISGKVPRRPVLSPKSRTIFEKSLLEQYVKDTGNDPITNEPLS 46

>d1v87a_ g.44.1.1 (A:) Deltex protein 2 RING-H2 domain {Mouse (Mus musculus) [TaxId: 10090]} Length = 114

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: RING finger domain, C3HC4
domain: Deltex protein 2 RING-H2 domain
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 37.7 bits (86), Expect = 2e-04
 Identities = 14/73 (19%), Positives = 22/73 (30%), Gaps = 23/73 (31%)

Query: 135 LSEIDIEREEECGICLEICC------------------KIVLPDCNHSMCMRCYRNWRAR 176
             E+ +  EE+C IC+E                        L  C+H+  + C       
Sbjct: 17  TEELKVAPEEDCIICMEKLAVASGYSDMTDSKALGPMVVGRLTKCSHAFHLLCLLAMYCN 76

Query: 177 SQ-----SCPFCR 184
                   CP C+
Sbjct: 77  GNKDGSLQCPSCK 89

>d1ur6b_ g.44.1.1 (B:) Not-4 N-terminal RING finger domain {Human (Homo sapiens) [TaxId: 9606]} Length = 52

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: RING finger domain, C3HC4
domain: Not-4 N-terminal RING finger domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 33.5 bits (76), Expect = 0.002
 Identities = 11/48 (22%), Positives = 17/48 (35%), Gaps = 5/48 (10%)

Query: 145 ECGICLEICCK----IVLPDCNHSMCMRCYRNW-RARSQSCPFCRDSL 187
           EC +C+E             C + +C  C+       +  CP CR   
Sbjct: 2   ECPLCMEPLEIDDINFFPCTCGYQICRFCWHRIRTDENGLCPACRKPY 49

>d1wgma_ g.44.1.2 (A:) Ubiquitin conjugation factor E4A {Human (Homo sapiens) [TaxId: 9606]} Length = 98

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: U-box
domain: Ubiquitin conjugation factor E4A
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 33.6 bits (76), Expect = 0.004
 Identities = 11/47 (23%), Positives = 16/47 (34%), Gaps = 1/47 (2%)

Query: 139 DIEREEECGICLEICCK-IVLPDCNHSMCMRCYRNWRARSQSCPFCR 184
           D   E    I   + C  +VLP    ++            Q+ PF R
Sbjct: 18  DACDEFLDPIMSTLMCDPVVLPSSRVTVDRSTIARHLLSDQTDPFNR 64

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	242
d1iyma_	55	EL5 RING-H2 domain {Rice (Oryza sativa) [TaxId: 45	99.43
d1fbva4	79	CBL {Human (Homo sapiens) [TaxId: 9606]}	99.41
d1rmda2	86	V(D)J recombination activating protein 1 (RAG1), d	99.41
d1chca_	68	Immediate early protein, IEEHV {Equine herpesvirus	99.4
d1jm7a_	103	brca1 RING domain {Human (Homo sapiens) [TaxId: 96	99.36
d1g25a_	65	TFIIH Mat1 subunit {Human (Homo sapiens) [TaxId: 9	99.33
d2c2la2	80	STIP1 homology and U box-containing protein 1, STU	99.32
d1ur6b_	52	Not-4 N-terminal RING finger domain {Human (Homo s	99.31
d2baya1	56	Pre-mRNA splicing factor Prp19 {Baker's yeast (Sac	99.3
d1t1ha_	78	E3 ubiquitin ligase PUB14 {Thale-cress (Arabidopsi	99.3
d1bora_	56	Acute promyelocytic leukaemia proto-oncoprotein PM	99.26
d1jm7b_	97	bard1 RING domain {Human (Homo sapiens) [TaxId: 96	99.22
d3dplr1	88	RIGG-box protein 1 (RBX1) of SCF ubiquitin ligase	99.16
d1v87a_	114	Deltex protein 2 RING-H2 domain {Mouse (Mus muscul	99.13
d1wgma_	98	Ubiquitin conjugation factor E4A {Human (Homo sapi	99.06
d1vyxa_	60	IE1B protein (ORF K3), N-terminal domain {Kaposi's	98.93
d1wima_	94	UbcM4-interacting protein 4 (KIAA0161) {Human (Hom	98.38
d2cs3a1	80	Protein c14orf4 (KIAA1865) {Human (Homo sapiens) [	88.73
d1weoa_	93	Cellulose synthase A catalytic subunit 7, IRX3 {Th	87.68
d1wila_	89	Hypothetical protein KIAA1045 {Human (Homo sapiens	82.04
d1z60a1	59	TFIIH p44 subunit cysteine-rich domain {Human (Hom	81.57

>d1iyma_ g.44.1.1 (A:) EL5 RING-H2 domain {Rice (Oryza sativa) [TaxId: 4530]}

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: RING finger domain, C3HC4
domain: EL5 RING-H2 domain
species: Rice (Oryza sativa) [TaxId: 4530]

Probab=99.43  E-value=2.7e-14  Score=94.25  Aligned_cols=47  Identities=30%  Similarity=0.785  Sum_probs=40.8

Q ss_pred             CccCeecccccccccc----eecCCCCcchHHHHHHHhccCCCCcCccccc
Q 026172          141 EREEECGICLEICCKI----VLPDCNHSMCMRCYRNWRARSQSCPFCRDSL  187 (242)
Q Consensus       141 ~~~~~C~ICl~~~~~~----v~~~CgH~fC~~Ci~~w~~~~~~CP~CR~~l  187 (242)
                      +++.+|+||++.+...    .+++|||.||..|+.+|+..+.+||+||.++
T Consensus         3 ed~~~C~ICl~~~~~~~~~~~l~~C~H~Fh~~Ci~~Wl~~~~~CP~CR~~i   53 (55)
T d1iyma_           3 DDGVECAVCLAELEDGEEARFLPRCGHGFHAECVDMWLGSHSTCPLCRLTV   53 (55)
T ss_dssp             CCSCCCTTTCCCCCTTSCCEECSSSCCEECTTHHHHTTTTCCSCSSSCCCS
T ss_pred             CCCCCCeEECccccCCCEEEEeCCCCCcccHHHHHHHHHhCCcCCCCCCEe
Confidence            4667899999999743    3457999999999999999999999999976

>d1fbva4 g.44.1.1 (A:356-434) CBL {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: RING finger domain, C3HC4
domain: CBL
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.41  E-value=6.7e-14  Score=98.99  Aligned_cols=48  Identities=33%  Similarity=0.863  Sum_probs=43.5

Q ss_pred             cCeecccccccccceecCCCCcchHHHHHHHhc-cCCCCcCcccccccc
Q 026172          143 EEECGICLEICCKIVLPDCNHSMCMRCYRNWRA-RSQSCPFCRDSLRRV  190 (242)
Q Consensus       143 ~~~C~ICl~~~~~~v~~~CgH~fC~~Ci~~w~~-~~~~CP~CR~~l~~~  190 (242)
                      ...|+||++.+.+++.++|||.||..|+..|+. ++++||+||..+...
T Consensus        23 ~~~C~IC~~~~~~~~~~~CgH~fC~~Ci~~wl~~~~~~CP~Cr~~i~~~   71 (79)
T d1fbva4          23 FQLCKICAENDKDVKIEPCGHLMCTSCLTSWQESEGQGCPFCRCEIKGT   71 (79)
T ss_dssp             TTBCTTTSSSBCCEECSSSCCEECHHHHHHHHHTTCCSCTTTCCCCCCC
T ss_pred             CCCCccCCCcCCCeEEeCCCCeeeHHHHHHHHHHCcCcCCCCCcCccCC
Confidence            356999999999999999999999999999997 678899999999754

>d1rmda2 g.44.1.1 (A:1-86) V(D)J recombination activating protein 1 (RAG1), dimerization domain {Mouse (Mus musculus) [TaxId: 10090]}

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: RING finger domain, C3HC4
domain: V(D)J recombination activating protein 1 (RAG1), dimerization domain
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.41  E-value=2.7e-14  Score=102.65  Aligned_cols=50  Identities=26%  Similarity=0.509  Sum_probs=44.6

Q ss_pred             CccCeecccccccccceecCCCCcchHHHHHHHhc-cCCCCcCcccccccc
Q 026172          141 EREEECGICLEICCKIVLPDCNHSMCMRCYRNWRA-RSQSCPFCRDSLRRV  190 (242)
Q Consensus       141 ~~~~~C~ICl~~~~~~v~~~CgH~fC~~Ci~~w~~-~~~~CP~CR~~l~~~  190 (242)
                      .++..|+||++.+.+|+.++|||.||..|+.+|+. ++..||.||.++...
T Consensus        21 ~~~l~C~IC~~~~~~pv~~~CgH~FC~~Ci~~~~~~~~~~CP~Cr~p~~~~   71 (86)
T d1rmda2          21 VKSISCQICEHILADPVETSCKHLFCRICILRCLKVMGSYCPSCRYPCFPT   71 (86)
T ss_dssp             HHHTBCTTTCSBCSSEEECTTSCEEEHHHHHHHHHHTCSBCTTTCCBCCGG
T ss_pred             ccCcCCccCCcchhcceecCCCChhhHHHHHHHHhhCCCcCcccCCCCChh
Confidence            35578999999999999999999999999999986 667999999988643

>d1chca_ g.44.1.1 (A:) Immediate early protein, IEEHV {Equine herpesvirus 1 [TaxId: 10326]}

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: RING finger domain, C3HC4
domain: Immediate early protein, IEEHV
species: Equine herpesvirus 1 [TaxId: 10326]

Probab=99.40  E-value=5.2e-14  Score=96.72  Aligned_cols=48  Identities=29%  Similarity=0.783  Sum_probs=42.3

Q ss_pred             ccCeecccccccccc-eecCCCCcchHHHHHHHhccCCCCcCccccccc
Q 026172          142 REEECGICLEICCKI-VLPDCNHSMCMRCYRNWRARSQSCPFCRDSLRR  189 (242)
Q Consensus       142 ~~~~C~ICl~~~~~~-v~~~CgH~fC~~Ci~~w~~~~~~CP~CR~~l~~  189 (242)
                      ...+|+||++.+.++ +.++|||.||..|+.+|+..+.+||+||.++..
T Consensus         4 ~~d~C~IC~~~~~~~~~~~~C~H~Fc~~Ci~~w~~~~~~CP~CR~~i~~   52 (68)
T d1chca_           4 VAERCPICLEDPSNYSMALPCLHAFCYVCITRWIRQNPTCPLCKVPVES   52 (68)
T ss_dssp             CCCCCSSCCSCCCSCEEETTTTEEESTTHHHHHHHHSCSTTTTCCCCCC
T ss_pred             CCCCCccCCcCccCCcEEeCCCCcCcHHHHHHHHHhCCcCCCCCcchHh
Confidence            346799999999765 558999999999999999999999999998864

>d1jm7a_ g.44.1.1 (A:) brca1 RING domain {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: RING finger domain, C3HC4
domain: brca1 RING domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.36  E-value=7.7e-14  Score=103.33  Aligned_cols=53  Identities=26%  Similarity=0.693  Sum_probs=45.0

Q ss_pred             ccCeecccccccccceecCCCCcchHHHHHHHhccC---CCCcCcccccccccCCC
Q 026172          142 REEECGICLEICCKIVLPDCNHSMCMRCYRNWRARS---QSCPFCRDSLRRVNSGD  194 (242)
Q Consensus       142 ~~~~C~ICl~~~~~~v~~~CgH~fC~~Ci~~w~~~~---~~CP~CR~~l~~~~~~~  194 (242)
                      +.+.|+||++.+.+|+.++|||.||..|+..|+...   ..||.||.++...+...
T Consensus        20 ~~l~CpIC~~~~~~pv~~~CgH~fC~~Ci~~~~~~~~~~~~CP~Cr~~~~~~~l~~   75 (103)
T d1jm7a_          20 KILECPICLELIKEPVSTKCDHIFCKFCMLKLLNQKKGPSQCPLCKNDITKRSLQE   75 (103)
T ss_dssp             HHTSCSSSCCCCSSCCBCTTSCCCCSHHHHHHHHSSSSSCCCTTTSCCCCTTTCBC
T ss_pred             cCcCCCccCchhCCeEEcCCCCchhhHHHHHHHHHCCCCCcCcCCCCcCChhhCCc
Confidence            557899999999999999999999999999998643   58999999987544333

>d1g25a_ g.44.1.1 (A:) TFIIH Mat1 subunit {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: RING finger domain, C3HC4
domain: TFIIH Mat1 subunit
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.33  E-value=2.5e-13  Score=92.43  Aligned_cols=50  Identities=24%  Similarity=0.643  Sum_probs=40.4

Q ss_pred             ccCeeccccccccc-----ceecCCCCcchHHHHHHHhc-cCCCCcCccccccccc
Q 026172          142 REEECGICLEICCK-----IVLPDCNHSMCMRCYRNWRA-RSQSCPFCRDSLRRVN  191 (242)
Q Consensus       142 ~~~~C~ICl~~~~~-----~v~~~CgH~fC~~Ci~~w~~-~~~~CP~CR~~l~~~~  191 (242)
                      ++..|+||++.+..     .+.++|||.||..|+.+|+. .+.+||.||.+++..+
T Consensus         2 dd~~CpIC~~~~~~~~~~~~~~~~C~H~fc~~Ci~~~~~~~~~~CP~CR~~i~~~~   57 (65)
T d1g25a_           2 DDQGCPRCKTTKYRNPSLKLMVNVCGHTLCESCVDLLFVRGAGNCPECGTPLRKSN   57 (65)
T ss_dssp             CTTCCSTTTTHHHHCSSCCEEECTTCCCEEHHHHHHHHHTTSSSCTTTCCCCSSCC
T ss_pred             CCCCCCcCCceeecCCceEEEeCccChHhhHHHHHHHhCcCcCCCCCCCcCccccc
Confidence            46789999987531     25578999999999999986 5678999999987543

>d2c2la2 g.44.1.2 (A:225-304) STIP1 homology and U box-containing protein 1, STUB1 {Mouse (Mus musculus) [TaxId: 10090]}

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: U-box
domain: STIP1 homology and U box-containing protein 1, STUB1
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.32  E-value=3e-13  Score=95.59  Aligned_cols=51  Identities=14%  Similarity=0.075  Sum_probs=45.6

Q ss_pred             cCCccCeecccccccccceecCCCCcchHHHHHHHhc-cCCCCcCccccccc
Q 026172          139 DIEREEECGICLEICCKIVLPDCNHSMCMRCYRNWRA-RSQSCPFCRDSLRR  189 (242)
Q Consensus       139 ~~~~~~~C~ICl~~~~~~v~~~CgH~fC~~Ci~~w~~-~~~~CP~CR~~l~~  189 (242)
                      +..+++.|+||++.+.+|+.++|||+||..||.+|+. ++..||.||.++..
T Consensus         3 eiP~~l~CpIc~~l~~dPv~~~cGhtfc~~ci~~~l~~~~~~cP~c~~~l~~   54 (80)
T d2c2la2           3 DIPDYLCGKISFELMREPCITPSGITYDRKDIEEHLQRVGHFNPVTRSPLTQ   54 (80)
T ss_dssp             CCCSTTBCTTTCSBCSSEEECSSCCEEETTHHHHHHHHTCSSCTTTCCCCCG
T ss_pred             CCCccccCcCcCchhhhhcccCCcCeecHHHHHHHHhcCCccCCCccccccc
Confidence            3457899999999999999999999999999999987 56789999998763

>d1ur6b_ g.44.1.1 (B:) Not-4 N-terminal RING finger domain {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: RING finger domain, C3HC4
domain: Not-4 N-terminal RING finger domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.31  E-value=5.4e-13  Score=86.80  Aligned_cols=45  Identities=27%  Similarity=0.654  Sum_probs=38.0

Q ss_pred             Ceeccccccccc----ceecCCCCcchHHHHHHHhcc-CCCCcCcccccc
Q 026172          144 EECGICLEICCK----IVLPDCNHSMCMRCYRNWRAR-SQSCPFCRDSLR  188 (242)
Q Consensus       144 ~~C~ICl~~~~~----~v~~~CgH~fC~~Ci~~w~~~-~~~CP~CR~~l~  188 (242)
                      .+|+||++.+..    +..++|||.||..|+.+|+.. +.+||+||+++.
T Consensus         1 leCpICl~~~~~~~~~~~~~~CgH~~c~~C~~~w~~~~~~~CP~CR~~~~   50 (52)
T d1ur6b_           1 VECPLCMEPLEIDDINFFPCTCGYQICRFCWHRIRTDENGLCPACRKPYP   50 (52)
T ss_dssp             CEETTTTEECCGGGTTCCSSSSSCCCCHHHHHHHTTTSCCBCTTTCCBCS
T ss_pred             CCCcCCChhhhCCCceEEecCCCCccchHHHHHHHhhcCCCCCccCCcCC
Confidence            489999998863    244689999999999999984 668999999875

>d2baya1 g.44.1.2 (A:1-56) Pre-mRNA splicing factor Prp19 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: U-box
domain: Pre-mRNA splicing factor Prp19
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.30  E-value=2.8e-13  Score=89.49  Aligned_cols=47  Identities=13%  Similarity=0.142  Sum_probs=42.5

Q ss_pred             Ceecccccccccceec-CCCCcchHHHHHHHhccCCCCcCcccccccc
Q 026172          144 EECGICLEICCKIVLP-DCNHSMCMRCYRNWRARSQSCPFCRDSLRRV  190 (242)
Q Consensus       144 ~~C~ICl~~~~~~v~~-~CgH~fC~~Ci~~w~~~~~~CP~CR~~l~~~  190 (242)
                      +.|+||++.+.+|+.+ .|||.||..||.+|+.++.+||+||.++...
T Consensus         1 l~C~Ic~~~~~~Pv~~~~cGh~fc~~cI~~~l~~~~~CP~c~~~l~~~   48 (56)
T d2baya1           1 MLCAISGKVPRRPVLSPKSRTIFEKSLLEQYVKDTGNDPITNEPLSIE   48 (56)
T ss_dssp             CCCTTTCSCCSSEEEETTTTEEEEHHHHHHHHHHHSBCTTTCCBCCGG
T ss_pred             CCCccCCchHHhcCccCCCCCcccHHHHHHHHhhccCCCccCCcCCHH
Confidence            3699999999999865 6999999999999999999999999998743

>d1t1ha_ g.44.1.2 (A:) E3 ubiquitin ligase PUB14 {Thale-cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: U-box
domain: E3 ubiquitin ligase PUB14
species: Thale-cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=99.30  E-value=5.8e-13  Score=93.61  Aligned_cols=52  Identities=17%  Similarity=0.374  Sum_probs=46.3

Q ss_pred             cCCccCeecccccccccceecCCCCcchHHHHHHHhcc-CCCCcCcccccccc
Q 026172          139 DIEREEECGICLEICCKIVLPDCNHSMCMRCYRNWRAR-SQSCPFCRDSLRRV  190 (242)
Q Consensus       139 ~~~~~~~C~ICl~~~~~~v~~~CgH~fC~~Ci~~w~~~-~~~CP~CR~~l~~~  190 (242)
                      +..+++.|+||++.+.+|+.++|||+||..|+.+|+.. ...||.|+.++...
T Consensus         4 eiP~~l~CpIc~~~m~dPV~~~cgh~fc~~ci~~~~~~~~~~cP~~~~~l~~~   56 (78)
T d1t1ha_           4 EFPEYFRCPISLELMKDPVIVSTGQTYERSSIQKWLDAGHKTCPKSQETLLHA   56 (78)
T ss_dssp             CCSSSSSCTTTSCCCSSEEEETTTEEEEHHHHHHHHTTTCCBCTTTCCBCSSC
T ss_pred             CCCccCCCcCcCchhhCceEccCCCcchHHHHHHHHHHCCCCCCcccccCCcc
Confidence            45688999999999999999999999999999999974 57899999988743

>d1bora_ g.44.1.1 (A:) Acute promyelocytic leukaemia proto-oncoprotein PML {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: RING finger domain, C3HC4
domain: Acute promyelocytic leukaemia proto-oncoprotein PML
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.26  E-value=2.9e-13  Score=89.47  Aligned_cols=44  Identities=23%  Similarity=0.531  Sum_probs=40.0

Q ss_pred             ccCeecccccccccceecCCCCcchHHHHHHHhccCCCCcCcccccc
Q 026172          142 REEECGICLEICCKIVLPDCNHSMCMRCYRNWRARSQSCPFCRDSLR  188 (242)
Q Consensus       142 ~~~~C~ICl~~~~~~v~~~CgH~fC~~Ci~~w~~~~~~CP~CR~~l~  188 (242)
                      +.++|+||++.+.+++.++|||.||..|+.+|   +..||+||.++.
T Consensus         5 ~~l~C~IC~~~~~~p~~lpCgH~fC~~Ci~~~---~~~CP~Cr~~~~   48 (56)
T d1bora_           5 QFLRCQQCQAEAKCPKLLPCLHTLCSGCLEAS---GMQCPICQAPWP   48 (56)
T ss_dssp             CCSSCSSSCSSCBCCSCSTTSCCSBTTTCSSS---SSSCSSCCSSSS
T ss_pred             CCCCCcccCcccCCCEEecCCCHHhHHHHHcC---CCcCcCCCCccc
Confidence            45799999999999999999999999999765   678999999986

>d1jm7b_ g.44.1.1 (B:) bard1 RING domain {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: RING finger domain, C3HC4
domain: bard1 RING domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.22  E-value=8e-13  Score=96.69  Aligned_cols=48  Identities=25%  Similarity=0.571  Sum_probs=41.2

Q ss_pred             CccCeeccccccccccee-cCCCCcchHHHHHHHhccCCCCcCcccccccc
Q 026172          141 EREEECGICLEICCKIVL-PDCNHSMCMRCYRNWRARSQSCPFCRDSLRRV  190 (242)
Q Consensus       141 ~~~~~C~ICl~~~~~~v~-~~CgH~fC~~Ci~~w~~~~~~CP~CR~~l~~~  190 (242)
                      .+++.|+||++.+.+|+. ++|||+||..|+.+|+.  ..||.||.++...
T Consensus        20 ~~~l~C~IC~~~~~~pv~~~~CgH~fC~~Ci~~~~~--~~CP~Cr~~~~~~   68 (97)
T d1jm7b_          20 EKLLRCSRCTNILREPVCLGGCEHIFCSNCVSDCIG--TGCPVCYTPAWIQ   68 (97)
T ss_dssp             HHTTSCSSSCSCCSSCBCCCSSSCCBCTTTGGGGTT--TBCSSSCCBCSCS
T ss_pred             hhcCCCccCCchhhcCceeCCCCCchhHHHHHHHHh--ccccccCCcCchh
Confidence            356789999999999986 58999999999999984  4699999987643

>d3dplr1 g.44.1.1 (R:19-106) RIGG-box protein 1 (RBX1) of SCF ubiquitin ligase complex {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: RING finger domain, C3HC4
domain: RIGG-box protein 1 (RBX1) of SCF ubiquitin ligase complex
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.16  E-value=8.1e-12  Score=89.72  Aligned_cols=47  Identities=23%  Similarity=0.615  Sum_probs=39.9

Q ss_pred             ccCeeccccccccc------------------ceecCCCCcchHHHHHHHhccCCCCcCcccccc
Q 026172          142 REEECGICLEICCK------------------IVLPDCNHSMCMRCYRNWRARSQSCPFCRDSLR  188 (242)
Q Consensus       142 ~~~~C~ICl~~~~~------------------~v~~~CgH~fC~~Ci~~w~~~~~~CP~CR~~l~  188 (242)
                      .+..|+||++.+.+                  ++.++|||.||..||.+|+..+.+||+||++..
T Consensus        20 ~~d~C~IC~~~~~~~~~~~~~~~~~~~~~~~~~~~~~C~H~FH~~Ci~~Wl~~~~~CP~CR~~~~   84 (88)
T d3dplr1          20 VVDNCAICRNHIMDLCIECQANQASATSEECTVAWGVCNHAFHFHCISRWLKTRQVCPLDNREWE   84 (88)
T ss_dssp             CSCCCSSSCSCTTSCCTTHHHHTTCC---CCCEEEETTSCEEEHHHHHHHHTTCSBCSSSCSBCC
T ss_pred             CCCcCEEccchhhCccccccccccccccccCCeEEccccCcccHHHHHHHHHHCCcCCCCCCccc
Confidence            45669999887653                  345789999999999999999999999999875

>d1v87a_ g.44.1.1 (A:) Deltex protein 2 RING-H2 domain {Mouse (Mus musculus) [TaxId: 10090]}

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: RING finger domain, C3HC4
domain: Deltex protein 2 RING-H2 domain
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.13  E-value=1.2e-11  Score=92.68  Aligned_cols=49  Identities=29%  Similarity=0.596  Sum_probs=39.4

Q ss_pred             CccCeeccccccccc------------------ceecCCCCcchHHHHHHHhcc-----CCCCcCccccccc
Q 026172          141 EREEECGICLEICCK------------------IVLPDCNHSMCMRCYRNWRAR-----SQSCPFCRDSLRR  189 (242)
Q Consensus       141 ~~~~~C~ICl~~~~~------------------~v~~~CgH~fC~~Ci~~w~~~-----~~~CP~CR~~l~~  189 (242)
                      ..+..|+||++.+..                  ..+++|||.||..||..|+..     ..+||+||..+..
T Consensus        23 ~~~~~C~IC~e~l~~~~~~~~~~~~~~~~~~~~~~~~~CgH~FH~~Ci~~Wl~~~~~~~~~~CP~CR~~~~~   94 (114)
T d1v87a_          23 APEEDCIICMEKLAVASGYSDMTDSKALGPMVVGRLTKCSHAFHLLCLLAMYCNGNKDGSLQCPSCKTIYGE   94 (114)
T ss_dssp             CCSCEETTTTEETTSCCSTTTTCCCSSSCSSCCEEESSSCCEECHHHHHHHHHHTCCSSCCBCTTTCCBSSS
T ss_pred             cccccccchhheecccccccccccccccccccceEECCCCChhhHHHHHHHHHhcCcCCCCccccccchhcc
Confidence            345689999998753                  246789999999999999973     3589999998753

>d1wgma_ g.44.1.2 (A:) Ubiquitin conjugation factor E4A {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: U-box
domain: Ubiquitin conjugation factor E4A
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.06  E-value=5.9e-11  Score=86.87  Aligned_cols=52  Identities=19%  Similarity=0.113  Sum_probs=45.9

Q ss_pred             cCCccCeecccccccccceecCCC-CcchHHHHHHHhccCCCCcCcccccccc
Q 026172          139 DIEREEECGICLEICCKIVLPDCN-HSMCMRCYRNWRARSQSCPFCRDSLRRV  190 (242)
Q Consensus       139 ~~~~~~~C~ICl~~~~~~v~~~Cg-H~fC~~Ci~~w~~~~~~CP~CR~~l~~~  190 (242)
                      +..+++.|+||.+.+.+||.++|| |+||..||.+|+..+..||+||.++...
T Consensus        18 ~~P~~f~CPI~~~lm~dPV~~~~~~~ty~r~~I~~~l~~~~~~P~~~~~l~~~   70 (98)
T d1wgma_          18 DACDEFLDPIMSTLMCDPVVLPSSRVTVDRSTIARHLLSDQTDPFNRSPLTMD   70 (98)
T ss_dssp             SCCTTTBCTTTCSBCSSEEECTTTCCEEEHHHHHHHTTTSCBCTTTCSBCCTT
T ss_pred             CCcHHhCCcCchhHHHHHHhcccccchhhHHHHHHHHHhcCCcccccccccch
Confidence            445689999999999999998876 5899999999999999999999988643

>d1vyxa_ g.44.1.3 (A:) IE1B protein (ORF K3), N-terminal domain {Kaposi's sarcoma-associated herpesvirus, KSHV, HHV8 [TaxId: 37296]}

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: Variant RING domain
domain: IE1B protein (ORF K3), N-terminal domain
species: Kaposi's sarcoma-associated herpesvirus, KSHV, HHV8 [TaxId: 37296]

Probab=98.93  E-value=3.2e-10  Score=75.34  Aligned_cols=49  Identities=22%  Similarity=0.464  Sum_probs=40.3

Q ss_pred             CCccCeecccccccccceecCC-----CCcchHHHHHHHhc--cCCCCcCcccccc
Q 026172          140 IEREEECGICLEICCKIVLPDC-----NHSMCMRCYRNWRA--RSQSCPFCRDSLR  188 (242)
Q Consensus       140 ~~~~~~C~ICl~~~~~~v~~~C-----gH~fC~~Ci~~w~~--~~~~CP~CR~~l~  188 (242)
                      .++...|.||++.+.++...+|     +|.||..|+.+|+.  ++.+||+||++++
T Consensus         3 ded~~~C~IC~~~~~~~~~~~c~c~~c~h~~H~~Cl~~W~~~~~~~~CP~Cr~~~~   58 (60)
T d1vyxa_           3 DEDVPVCWICNEELGNERFRACGCTGELENVHRSCLSTWLTISRNTACQICGVVYN   58 (60)
T ss_dssp             TCSCCEETTTTEECSCCCCCSCCCSSGGGSCCHHHHHHHHHHHTCSBCTTTCCBCC
T ss_pred             CCCCCCCccCCccCCCceeEecccCCCCCEEcHHHHHHHHhhCCCCCCcccCCeee
Confidence            3567889999998887655544     59999999999986  5679999999875

>d1wima_ g.44.1.1 (A:) UbcM4-interacting protein 4 (KIAA0161) {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: RING finger domain, C3HC4
domain: UbcM4-interacting protein 4 (KIAA0161)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.38  E-value=6.2e-08  Score=69.36  Aligned_cols=45  Identities=20%  Similarity=0.522  Sum_probs=35.1

Q ss_pred             ccCeeccccccccc---ceecCCCCcchHHHHHHHhc-----c---CCCCcCcccc
Q 026172          142 REEECGICLEICCK---IVLPDCNHSMCMRCYRNWRA-----R---SQSCPFCRDS  186 (242)
Q Consensus       142 ~~~~C~ICl~~~~~---~v~~~CgH~fC~~Ci~~w~~-----~---~~~CP~CR~~  186 (242)
                      ...+|+||++.+..   +.+++|+|.||..|+..|+.     .   ...||.|+.+
T Consensus         4 ~~~~C~IC~~~~~~~~~~~~~~C~H~fC~~Cl~~~~~~~i~~~~~~~i~CP~~~C~   59 (94)
T d1wima_           4 GSSGCKLCLGEYPVEQMTTIAQCQCIFCTLCLKQYVELLIKEGLETAISCPDAACP   59 (94)
T ss_dssp             SBCCCSSSCCCCBGGGEEEETTTTEEEEHHHHHHHHHHHHHHCSCCCEECSCTTCS
T ss_pred             CCCcCccCCCcccCCceEEECCCCCEeCCcCHHHHHHHHHhcCCccccCCcCCCCC
Confidence            55789999998763   35678999999999999986     1   2379987543

>d2cs3a1 g.44.1.3 (A:8-87) Protein c14orf4 (KIAA1865) {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: Variant RING domain
domain: Protein c14orf4 (KIAA1865)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=88.73  E-value=0.23  Score=32.50  Aligned_cols=34  Identities=26%  Similarity=0.528  Sum_probs=27.7

Q ss_pred             ccCeecccccccccceecCC----CCcchHHHHHHHhc
Q 026172          142 REEECGICLEICCKIVLPDC----NHSMCMRCYRNWRA  175 (242)
Q Consensus       142 ~~~~C~ICl~~~~~~v~~~C----gH~fC~~Ci~~w~~  175 (242)
                      ..+.|.+|.+.+.+.....|    +|.||..|-+....
T Consensus         7 ~~l~CtlC~erLEdtHFVQCPsv~~HkFCFpCsr~sik   44 (80)
T d2cs3a1           7 GPLCCTICHERLEDTHFVQCPSVPSHKFCFPCSRESIK   44 (80)
T ss_dssp             CSCCCSSSCSCCSSTTSEECSSCSSCEECHHHHHHHHH
T ss_pred             CceeeeeehhhhcCCceEeCCCCcCCceeccccHHHHH
Confidence            45889999999998754444    79999999988875

>d1weoa_ g.44.1.1 (A:) Cellulose synthase A catalytic subunit 7, IRX3 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: RING finger domain, C3HC4
domain: Cellulose synthase A catalytic subunit 7, IRX3
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=87.68  E-value=0.38  Score=32.52  Aligned_cols=53  Identities=25%  Similarity=0.650  Sum_probs=39.0

Q ss_pred             ccCeeccccccccc-----c--eecCCCCcchHHHHHH-HhccCCCCcCcccccccccCCC
Q 026172          142 REEECGICLEICCK-----I--VLPDCNHSMCMRCYRN-WRARSQSCPFCRDSLRRVNSGD  194 (242)
Q Consensus       142 ~~~~C~ICl~~~~~-----~--v~~~CgH~fC~~Ci~~-w~~~~~~CP~CR~~l~~~~~~~  194 (242)
                      ....|.||-+..-.     +  ..-.|+-..|..|++- ..+.++.||.|+.+.++..-..
T Consensus        15 ~~q~CqiCGd~VG~~~~Ge~FVAC~eC~FPvCrpCyEYErkeG~q~CpqCkt~Ykr~kgsp   75 (93)
T d1weoa_          15 DGQFCEICGDQIGLTVEGDLFVACNECGFPACRPCYEYERREGTQNCPQCKTRYKRLRGSP   75 (93)
T ss_dssp             SSCBCSSSCCBCCBCSSSSBCCSCSSSCCCCCHHHHHHHHHTSCSSCTTTCCCCCCCTTCC
T ss_pred             ccchhhhcccccccCCCCCEEEEecccCCccchHHHHHHHhccCccCcccCChhhhhcCCC
Confidence            44689999987652     2  2236788899999965 4568999999999988654433

>d1wila_ g.50.1.3 (A:) Hypothetical protein KIAA1045 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: FYVE/PHD zinc finger
superfamily: FYVE/PHD zinc finger
family: variant PHD-like domain
domain: Hypothetical protein KIAA1045
species: Human (Homo sapiens) [TaxId: 9606]

Probab=82.04  E-value=0.83  Score=30.57  Aligned_cols=44  Identities=25%  Similarity=0.616  Sum_probs=30.9

Q ss_pred             CCccCeecccccccccceecC---CCCcchHHHHHHHh--c--------------cCCCCcCcc
Q 026172          140 IEREEECGICLEICCKIVLPD---CNHSMCMRCYRNWR--A--------------RSQSCPFCR  184 (242)
Q Consensus       140 ~~~~~~C~ICl~~~~~~v~~~---CgH~fC~~Ci~~w~--~--------------~~~~CP~CR  184 (242)
                      ...+..|.|| +.+..-.+.|   |+-.||..|+++.-  .              ...+|+.|-
T Consensus        12 v~~D~mC~vC-~v~t~~~l~pCRvCtRv~H~~CL~r~gyl~~e~a~e~~e~A~T~~GWSC~~C~   74 (89)
T d1wila_          12 VVNDEMCDVC-EVWTAESLFPCRVCTRVFHDGCLRRMGYIQGDSAAEVTEMAHTETGWSCHYCD   74 (89)
T ss_dssp             CCCSCCCTTT-CCCCSSCCSSCSSSSSCCCHHHHHHHTSCCCCCCCSCSCCCSSSSSCCCTTTC
T ss_pred             CCcCcccccc-CcccccceecceeecchhhHHHHHHhcccccHHHHHHHHhhcCCCCcchhhhc
Confidence            4567889999 5555433334   67899999998863  2              246999993

>d1z60a1 g.49.1.2 (A:328-386) TFIIH p44 subunit cysteine-rich domain {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: Cysteine-rich domain
superfamily: Cysteine-rich domain
family: TFIIH p44 subunit cysteine-rich domain
domain: TFIIH p44 subunit cysteine-rich domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=81.57  E-value=0.35  Score=30.40  Aligned_cols=42  Identities=24%  Similarity=0.408  Sum_probs=32.3

Q ss_pred             ccCeecccccccccce---ecCCCCcchHHHHHHHhccCCCCcCc
Q 026172          142 REEECGICLEICCKIV---LPDCNHSMCMRCYRNWRARSQSCPFC  183 (242)
Q Consensus       142 ~~~~C~ICl~~~~~~v---~~~CgH~fC~~Ci~~w~~~~~~CP~C  183 (242)
                      ....|--|+..+.+..   .+.|++.||..|=.-..+.--.||-|
T Consensus        14 ~~~~C~gC~~~l~~~~~y~C~~C~~~FC~dCD~fiHe~lh~CpgC   58 (59)
T d1z60a1          14 GERFCYGCQGELKDQHVYVCAVCQNVFCVDCDVFVHDSLHSCPGC   58 (59)
T ss_dssp             SCCEETTTTEECTTSEEECCTTTTCCBCHHHHHTTTTTSCSSSTT
T ss_pred             CCCCccCCCCcCCCCceEECcCCCCccccccchhhhhhhcCCCCC
Confidence            4567989998877543   47899999999965555567789988