Citrus Sinensis ID: 026183

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240--
MKAAVEKACPRVVSCADILTIAAEQSVALSGGPSWTNLLGRRDSRTANRTLANQNLPSPFDTLDRLKASFRNVGLNDNFDLVALSGAHTFGRAQCRFFSVRLFNFNNTGNPDPTLDATFLQQLRQLCPQGGNGSVLTNLDVTTPNVFDNKYFSNLRNRKGLLQSDQELFSTPGADTIDIVNVFRKNQAAFFKSFVTSMIRMGNLKPLTGNEGEIRLNCRRVNGNSNIVTRSSSSEGDTISSF
cHHHHHHHccccccHHHHHHHHHHHHHHHccccccccccccccHHHHHHHHHHcccccccccHHHHHHHHHHccccccccEEEEEcccccccccccccccccccccccccccccccHHHHHHHHHcccccccccccccccccccHHHHHHHHHHHHHccccccccHHHHccccccHHHHHHHHHHcHHHHHHHHHHHHHHHccccccccccccccccccccccccccccccccccccccccc
HHHHHHHHccccccHHHHHHHHHHHHHHHcccccccccEccEEcccccHHHHHHHcccccccHHHHHHHHHccccccHHHHHHHHHHHHccEEEHHHcHHHHHcHHHcccccccccHHHHHHHHHHcccccccccEEEcccccccccccHHHHHHHccccccHHHHHHHHcccccHHHHHHHHHHcHHHHHHHHHHHHHHHHccccEcccccEcccccccccccccEEEEEccccccEEEcc
MKAAVEKACPRVVSCADILTIAAEQSvalsggpswtnllgrrdsrtanrtlanqnlpspfdtLDRLKASFrnvglndnfdlVALSgahtfgraqCRFFSVRLfnfnntgnpdptlDATFLQQLRQlcpqggngsvltnldvttpnvfdnkyfsnlrnrkgllqsdqelfstpgadtiDIVNVFRKNQAAFFKSFVTSMIrmgnlkpltgnegeirlncrrvngnsnivtrssssegdtissf
mkaavekacprvVSCADILTIAAEqsvalsggpswtnLLGRRDSRTANrtlanqnlpspfdtLDRLKASFRNVGLNDNFDLVALSGAHTFGRAQCRFFSVRLFNFNNTGNPDPTLDATFLQQLRQLCPQGGNGSVLTNLDVTTPNVFDNKYFSNLRNRKGLLQSDQELFSTPGADTIDIVNVFRKNQAAFFKSFVTSMIRMgnlkpltgnegeirlncrrvngnsnivtrssssegdtissf
MKAAVEKACPRVVSCADILTIAAEQSVALSGGPSWTNLLGRRDSRTANRTLANQNLPSPFDTLDRLKASFRNVGLNDNFDLVALSGAHTFGRAQCRFFSVRLFNFNNTGNPDPTLDATFLQQLRQLCPQGGNGSVLTNLDVTTPNVFDNKYFSNLRNRKGLLQSDQELFSTPGADTIDIVNVFRKNQAAFFKSFVTSMIRMGNLKPLTGNEGEIRLNCRRVNGNSNIVTRSSSSEGDTISSF
*******ACPRVVSCADILTIAAEQSVALSGGPSWTNLL********************FDTLDRLKASFRNVGLNDNFDLVALSGAHTFGRAQCRFFSVRLFNFNNTGNPDPTLDATFLQQLRQLCPQGGNGSVLTNLDVTTPNVFDNKYFSNLRNRKGLLQSDQELFSTPGADTIDIVNVFRKNQAAFFKSFVTSMIRMGNLKPLTGNEGEIRLNCRRV*********************
MKAAVEKACPRVVSCADILTIAAEQSVALSGGPSWTNLLGRRDSRTANRTLANQNLPSPFDTLDRLKASFRNVGLNDNFDLVALSGAHTFGRAQCRFFSVRLFNFNNTGNPDPTLDATFLQQLRQLCP**GNGSVLTNLDVTTPNVFDNKYFSNLRNRKGLLQSDQELFSTPGADTIDIVNVFRKNQAAFFKSFVTSMIRMGNLKPLTGNEGEIRLNCRRVNG************GDTIS**
*********PRVVSCADILTIAAEQSVALSGGPSWTNLLGRRDSRTANRTLANQNLPSPFDTLDRLKASFRNVGLNDNFDLVALSGAHTFGRAQCRFFSVRLFNFNNTGNPDPTLDATFLQQLRQLCPQGGNGSVLTNLDVTTPNVFDNKYFSNLRNRKGLLQSDQELFSTPGADTIDIVNVFRKNQAAFFKSFVTSMIRMGNLKPLTGNEGEIRLNCRRVNGNSNIVT*************
MKAAVEKACPRVVSCADILTIAAEQSVALSGGPSWTNLLGRRDSRTANRTLANQNLPSPFDTLDRLKASFRNVGLNDNFDLVALSGAHTFGRAQCRFFSVRLFNFNNTGNPDPTLDATFLQQLRQLCPQGGNGSVLTNLDVTTPNVFDNKYFSNLRNRKGLLQSDQELFSTPGADTIDIVNVFRKNQAAFFKSFVTSMIRMGNLKPLTGNEGEIRLNCRRVNGNSNIVTRSSSSE*DTISS*
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
iiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
iiiiiiiiiiiihhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
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MKAAVEKACPRVVSCADILTIAAEQSVALSGGPSWTNLLGRRDSRTANRTLANQNLPSPFDTLDRLKASFRNVGLNDNFDLVALSGAHTFGRAQCRFFSVRLFNFNNTGNPDPTLDATFLQQLRQLCPQGGNGSVLTNLDVTTPNVFDNKYFSNLRNRKGLLQSDQELFSTPGADTIDIVNVFRKNQAAFFKSFVTSMIRMGNLKPLTGNEGEIRLNCRRVNGNSNIVTRSSSSEGDTISSF
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query242 2.2.26 [Sep-21-2011]
Q9LEH3327 Peroxidase 15 OS=Ipomoea N/A no 0.913 0.675 0.698 3e-84
P17180349 Peroxidase C3 OS=Armoraci N/A no 0.917 0.636 0.671 1e-82
P59121306 Peroxidase E5 OS=Armoraci N/A no 0.917 0.725 0.653 2e-80
P24102349 Peroxidase 22 OS=Arabidop yes no 0.942 0.653 0.627 5e-80
O80912349 Peroxidase 23 OS=Arabidop no no 0.942 0.653 0.631 2e-79
P15233332 Peroxidase C1C (Fragment) N/A no 0.929 0.677 0.650 2e-79
P00433353 Peroxidase C1A OS=Armorac N/A no 0.929 0.637 0.650 2e-79
Q9SMU8353 Peroxidase 34 OS=Arabidop no no 0.929 0.637 0.646 9e-79
Q42578335 Peroxidase 53 OS=Arabidop no no 0.917 0.662 0.623 2e-78
P24101354 Peroxidase 33 OS=Arabidop no no 0.929 0.635 0.641 2e-78
>sp|Q9LEH3|PER15_IPOBA Peroxidase 15 OS=Ipomoea batatas GN=pod PE=1 SV=1 Back     alignment and function desciption
 Score =  311 bits (796), Expect = 3e-84,   Method: Compositional matrix adjust.
 Identities = 155/222 (69%), Positives = 176/222 (79%), Gaps = 1/222 (0%)

Query: 1   MKAAVEKACPRVVSCADILTIAAEQSVALSGGPSWTNLLGRRDSRTANRTLANQNLPSPF 60
           +K AVE ACP VVSC DIL +A+E SV+L+GGPSW  LLGRRD RTAN+  AN +LPSPF
Sbjct: 107 IKTAVENACPGVVSCVDILALASESSVSLAGGPSWNVLLGRRDRRTANQGGANTSLPSPF 166

Query: 61  DTLDRLKASFRNVGLNDNFDLVALSGAHTFGRAQCRFFSVRLFNFNNTGNPDPTLDATFL 120
           + L  L   F NVGLN N DLVALSGAHTFGRAQCR FS RLFNF+NTGNPDPTL+ T+L
Sbjct: 167 ENLTNLTQKFTNVGLNVN-DLVALSGAHTFGRAQCRTFSPRLFNFSNTGNPDPTLNTTYL 225

Query: 121 QQLRQLCPQGGNGSVLTNLDVTTPNVFDNKYFSNLRNRKGLLQSDQELFSTPGADTIDIV 180
             L+Q+CPQGG+G  +TNLD TTP+ FDN YFSNL+  +GLLQSDQELFST GA TI IV
Sbjct: 226 ATLQQICPQGGSGFTVTNLDPTTPDTFDNNYFSNLQTNRGLLQSDQELFSTSGAPTIAIV 285

Query: 181 NVFRKNQAAFFKSFVTSMIRMGNLKPLTGNEGEIRLNCRRVN 222
           N F  NQ AFF+SFV SMI MGN+ PLTG+ GEIR NCRR N
Sbjct: 286 NNFSANQTAFFESFVQSMINMGNISPLTGSNGEIRSNCRRPN 327
Removal of H(2)O(2), oxidation of toxic reductants, biosynthesis and degradation of lignin, suberization, auxin catabolism, response to environmental stresses such as wounding, pathogen attack and oxidative stress. These functions might be dependent on each isozyme/isoform in each plant tissue.
Ipomoea batatas (taxid: 4120)
EC: 1EC: .EC: 1EC: 1EC: .EC: 1EC: .EC: 7
>sp|P17180|PER3_ARMRU Peroxidase C3 OS=Armoracia rusticana GN=PRXC3 PE=3 SV=1 Back     alignment and function description
>sp|P59121|PERE5_ARMRU Peroxidase E5 OS=Armoracia rusticana GN=HRPE5 PE=1 SV=1 Back     alignment and function description
>sp|P24102|PER22_ARATH Peroxidase 22 OS=Arabidopsis thaliana GN=PER22 PE=1 SV=2 Back     alignment and function description
>sp|O80912|PER23_ARATH Peroxidase 23 OS=Arabidopsis thaliana GN=PER23 PE=2 SV=1 Back     alignment and function description
>sp|P15233|PER1C_ARMRU Peroxidase C1C (Fragment) OS=Armoracia rusticana GN=PRXC1C PE=3 SV=1 Back     alignment and function description
>sp|P00433|PER1A_ARMRU Peroxidase C1A OS=Armoracia rusticana GN=PRXC1A PE=1 SV=2 Back     alignment and function description
>sp|Q9SMU8|PER34_ARATH Peroxidase 34 OS=Arabidopsis thaliana GN=PER34 PE=1 SV=1 Back     alignment and function description
>sp|Q42578|PER53_ARATH Peroxidase 53 OS=Arabidopsis thaliana GN=PER53 PE=1 SV=1 Back     alignment and function description
>sp|P24101|PER33_ARATH Peroxidase 33 OS=Arabidopsis thaliana GN=PER33 PE=1 SV=1 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query242
110007377 350 peroxidase [Citrus maxima] 0.991 0.685 0.739 1e-96
255587906271 Peroxidase C3 precursor, putative [Ricin 0.921 0.822 0.748 5e-93
109809965 346 rubber peroxidase 1 [Hevea brasiliensis] 0.933 0.653 0.703 1e-89
2129513 347 peroxidase (EC 1.11.1.7) A3a precursor - 0.929 0.648 0.711 4e-88
485393308 peroxidase [Populus kitakamiensis] 0.929 0.730 0.711 5e-88
224076042 349 predicted protein [Populus trichocarpa] 0.929 0.644 0.709 7e-87
428135665 350 peroxidase 3 [Pyrus pyrifolia] 0.925 0.64 0.706 2e-86
1199778 343 peroxidase [Populus nigra] 0.925 0.653 0.697 2e-86
224057144 343 predicted protein [Populus trichocarpa] 0.925 0.653 0.688 5e-86
1279648 343 peroxidase [Populus trichocarpa] 0.925 0.653 0.693 9e-86
>gi|110007377|gb|ABG49115.1| peroxidase [Citrus maxima] Back     alignment and taxonomy information
 Score =  358 bits (919), Expect = 1e-96,   Method: Compositional matrix adjust.
 Identities = 179/242 (73%), Positives = 200/242 (82%), Gaps = 2/242 (0%)

Query: 1   MKAAVEKACPRVVSCADILTIAAEQSVALSGGPSWTNLLGRRDSRTANRTLANQNLPSPF 60
           MK A+E ACP +VSCADIL IA+EQSV LSGGPSWT  LGRRD RTANR+LA+QNLP+PF
Sbjct: 111 MKTALESACPGIVSCADILAIASEQSVNLSGGPSWTVPLGRRDGRTANRSLADQNLPTPF 170

Query: 61  DTLDRLKASFRNVGLNDNFDLVALSGAHTFGRAQCRFFSVRLFNFNNTGNPDPTLDATFL 120
            TLD LK  FRNVGLNDN DLVALSGAHTFGRAQC+FFS RLFNFN TGNPDPTL+AT L
Sbjct: 171 QTLDLLKGRFRNVGLNDNTDLVALSGAHTFGRAQCQFFSQRLFNFNGTGNPDPTLNATLL 230

Query: 121 QQLRQLCPQGGNGSVLTNLDVTTPNVFDNKYFSNLRNRKGLLQSDQELFSTPGADTIDIV 180
            QL+QLCPQGGNGSVLTNLD++TP+ FDN YFSNL+   GLLQSDQELFST GADTI IV
Sbjct: 231 AQLQQLCPQGGNGSVLTNLDLSTPDGFDNDYFSNLQANNGLLQSDQELFSTSGADTIPIV 290

Query: 181 NVFRKNQAAFFKSFVTSMIRMGNLKPLTGNEGEIRLNCRRVNGNSNIVTRSSSSEGDTIS 240
           N F  N+ AFF+SF  SMIRMGNL  LTG +GEIR NCRRVN N+  ++  SSS+G  +S
Sbjct: 291 NNFSSNETAFFESFAVSMIRMGNLSLLTGTQGEIRSNCRRVNANN--LSTISSSDGGLVS 348

Query: 241 SF 242
           S 
Sbjct: 349 SI 350

Source: Citrus maxima

Species: Citrus maxima

Genus: Citrus

Family: Rutaceae

Order: Sapindales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|255587906|ref|XP_002534437.1| Peroxidase C3 precursor, putative [Ricinus communis] gi|223525298|gb|EEF27947.1| Peroxidase C3 precursor, putative [Ricinus communis] Back     alignment and taxonomy information
>gi|109809965|gb|ABG46370.1| rubber peroxidase 1 [Hevea brasiliensis] Back     alignment and taxonomy information
>gi|2129513|pir||S60054 peroxidase (EC 1.11.1.7) A3a precursor - Japanese aspen x large-toothed aspen gi|1255661|dbj|BAA07240.1| peroidase precursor [Populus sieboldii x Populus grandidentata] Back     alignment and taxonomy information
>gi|485393|dbj|BAA06335.1| peroxidase [Populus kitakamiensis] Back     alignment and taxonomy information
>gi|224076042|ref|XP_002304885.1| predicted protein [Populus trichocarpa] gi|222842317|gb|EEE79864.1| predicted protein [Populus trichocarpa] gi|225626269|gb|ACN97184.1| peroxidase [Populus trichocarpa] Back     alignment and taxonomy information
>gi|428135665|gb|AFY97686.1| peroxidase 3 [Pyrus pyrifolia] Back     alignment and taxonomy information
>gi|1199778|dbj|BAA11853.1| peroxidase [Populus nigra] Back     alignment and taxonomy information
>gi|224057144|ref|XP_002299141.1| predicted protein [Populus trichocarpa] gi|222846399|gb|EEE83946.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
>gi|1279648|emb|CAA66034.1| peroxidase [Populus trichocarpa] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query242
UNIPROTKB|Q9LEH3327 pod "Peroxidase 15" [Ipomoea b 0.913 0.675 0.698 3.3e-79
TAIR|locus:2057180349 AT2G38380 [Arabidopsis thalian 0.942 0.653 0.627 4e-74
TAIR|locus:2057165349 AT2G38390 [Arabidopsis thalian 0.942 0.653 0.631 1.4e-73
TAIR|locus:2101318353 PRXCB "peroxidase CB" [Arabido 0.929 0.637 0.646 1.4e-73
TAIR|locus:2101298354 PRXCA "peroxidase CA" [Arabido 0.929 0.635 0.641 2.8e-73
TAIR|locus:2170204335 PA2 "peroxidase 2" [Arabidopsi 0.921 0.665 0.620 2.8e-73
TAIR|locus:2170214358 AT5G06730 [Arabidopsis thalian 0.929 0.628 0.601 1.8e-71
TAIR|locus:2097273352 AT3G32980 [Arabidopsis thalian 0.929 0.639 0.628 4.8e-71
TAIR|locus:2138273346 Prx37 "peroxidase 37" [Arabido 0.942 0.658 0.598 5.5e-70
TAIR|locus:2138278346 AT4G08780 [Arabidopsis thalian 0.942 0.658 0.585 3e-69
UNIPROTKB|Q9LEH3 pod "Peroxidase 15" [Ipomoea batatas (taxid:4120)] Back     alignment and assigned GO terms
 Score = 796 (285.3 bits), Expect = 3.3e-79, P = 3.3e-79
 Identities = 155/222 (69%), Positives = 176/222 (79%)

Query:     1 MKAAVEKACPRVVSCADILTIAAEQSVALSGGPSWTNLLGRRDSRTANRTLANQNLPSPF 60
             +K AVE ACP VVSC DIL +A+E SV+L+GGPSW  LLGRRD RTAN+  AN +LPSPF
Sbjct:   107 IKTAVENACPGVVSCVDILALASESSVSLAGGPSWNVLLGRRDRRTANQGGANTSLPSPF 166

Query:    61 DTLDRLKASFRNVGLNDNFDLVALSGAHTFGRAQCRFFSVRLFNFNNTGNPDPTLDATFL 120
             + L  L   F NVGLN N DLVALSGAHTFGRAQCR FS RLFNF+NTGNPDPTL+ T+L
Sbjct:   167 ENLTNLTQKFTNVGLNVN-DLVALSGAHTFGRAQCRTFSPRLFNFSNTGNPDPTLNTTYL 225

Query:   121 QQLRQLCPQGGNGSVLTNLDVTTPNVFDNKYFSNLRNRKGLLQSDQELFSTPGADTIDIV 180
               L+Q+CPQGG+G  +TNLD TTP+ FDN YFSNL+  +GLLQSDQELFST GA TI IV
Sbjct:   226 ATLQQICPQGGSGFTVTNLDPTTPDTFDNNYFSNLQTNRGLLQSDQELFSTSGAPTIAIV 285

Query:   181 NVFRKNQAAFFKSFVTSMIRMGNLKPLTGNEGEIRLNCRRVN 222
             N F  NQ AFF+SFV SMI MGN+ PLTG+ GEIR NCRR N
Sbjct:   286 NNFSANQTAFFESFVQSMINMGNISPLTGSNGEIRSNCRRPN 327
GO:0004601 "peroxidase activity" evidence=IDA
GO:0020037 "heme binding" evidence=IDA
TAIR|locus:2057180 AT2G38380 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2057165 AT2G38390 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2101318 PRXCB "peroxidase CB" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2101298 PRXCA "peroxidase CA" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2170204 PA2 "peroxidase 2" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2170214 AT5G06730 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2097273 AT3G32980 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2138273 Prx37 "peroxidase 37" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2138278 AT4G08780 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

ID ?Name ?Annotated EC number ?Identity ?Query coverage ?Hit coverage ?RBH(Q2H) ?RBH(H2Q) ?
P24102PER22_ARATH1, ., 1, 1, ., 1, ., 70.62710.94210.6532yesno

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

Prediction LevelEC numberConfidence of Prediction
4th Layer1.11.1.70.914
3rd Layer1.11.10.921

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Fail to connect to STRING server

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query242
cd00693298 cd00693, secretory_peroxidase, Horseradish peroxid 1e-120
PLN03030324 PLN03030, PLN03030, cationic peroxidase; Provision 4e-58
pfam00141180 pfam00141, peroxidase, Peroxidase 1e-33
cd00691253 cd00691, ascorbate_peroxidase, Ascorbate peroxidas 3e-17
cd00314255 cd00314, plant_peroxidase_like, Heme-dependent per 1e-16
PLN02608289 PLN02608, PLN02608, L-ascorbate peroxidase 1e-09
PLN02879251 PLN02879, PLN02879, L-ascorbate peroxidase 2e-08
PLN02364250 PLN02364, PLN02364, L-ascorbate peroxidase 1 2e-07
cd00692328 cd00692, ligninase, Ligninase and other manganese- 5e-06
COG0376 730 COG0376, KatG, Catalase (peroxidase I) [Inorganic 6e-04
TIGR00198 716 TIGR00198, cat_per_HPI, catalase/peroxidase HPI 0.001
>gnl|CDD|173827 cd00693, secretory_peroxidase, Horseradish peroxidase and related secretory plant peroxidases Back     alignment and domain information 
 Score =  343 bits (883), Expect = e-120
 Identities = 120/220 (54%), Positives = 148/220 (67%), Gaps = 4/220 (1%)

Query: 2   KAAVEKACPRVVSCADILTIAAEQSVALSGGPSWTNLLGRRDSRTANRTLANQNLPSPFD 61
           KAA+E ACP VVSCADIL +AA  +V L+GGPS+   LGRRD R ++      NLPSPF 
Sbjct: 83  KAALEAACPGVVSCADILALAARDAVVLAGGPSYEVPLGRRDGRVSSANDVG-NLPSPFF 141

Query: 62  TLDRLKASFRNVGLNDNFDLVALSGAHTFGRAQCRFFSVRLFNFNNTGNPDPTLDATFLQ 121
           ++ +L + F + GL    DLVALSGAHT GRA C  FS RL+NF+ TG+PDPTLD  +  
Sbjct: 142 SVSQLISLFASKGLTVT-DLVALSGAHTIGRAHCSSFSDRLYNFSGTGDPDPTLDPAYAA 200

Query: 122 QLRQLCPQGGNGSVLTNLDVTTPNVFDNKYFSNLRNRKGLLQSDQELFSTPGADTIDIVN 181
           QLR+ CP GG+   L  LD  TPN FDN Y+ NL   +GLL SDQ L S P   T  IVN
Sbjct: 201 QLRKKCPAGGDDDTLVPLDPGTPNTFDNSYYKNLLAGRGLLTSDQALLSDP--RTRAIVN 258

Query: 182 VFRKNQAAFFKSFVTSMIRMGNLKPLTGNEGEIRLNCRRV 221
            +  NQ AFF+ F  +M++MGN+  LTG++GEIR NCR V
Sbjct: 259 RYAANQDAFFRDFAAAMVKMGNIGVLTGSQGEIRKNCRVV 298

Secretory peroxidases belong to class III of the plant heme-dependent peroxidase superfamily. All members of the superfamily share a heme prosthetic group and catalyze a multistep oxidative reaction involving hydrogen peroxide as the electron acceptor. Class III peroxidases are found in the extracellular space or in the vacuole in plants where they have been implicated in hydrogen peroxide detoxification, auxin catabolism and lignin biosynthesis, and stress response. Class III peroxidases contain four conserved disulphide bridges and two conserved calcium binding sites. Length = 298
>gnl|CDD|215545 PLN03030, PLN03030, cationic peroxidase; Provisional Back     alignment and domain information
>gnl|CDD|215745 pfam00141, peroxidase, Peroxidase Back     alignment and domain information
>gnl|CDD|173825 cd00691, ascorbate_peroxidase, Ascorbate peroxidases and cytochrome C peroxidases Back     alignment and domain information
>gnl|CDD|173823 cd00314, plant_peroxidase_like, Heme-dependent peroxidases similar to plant peroxidases Back     alignment and domain information
>gnl|CDD|178218 PLN02608, PLN02608, L-ascorbate peroxidase Back     alignment and domain information
>gnl|CDD|178467 PLN02879, PLN02879, L-ascorbate peroxidase Back     alignment and domain information
>gnl|CDD|166005 PLN02364, PLN02364, L-ascorbate peroxidase 1 Back     alignment and domain information
>gnl|CDD|173826 cd00692, ligninase, Ligninase and other manganese-dependent fungal peroxidases Back     alignment and domain information
>gnl|CDD|223453 COG0376, KatG, Catalase (peroxidase I) [Inorganic ion transport and metabolism] Back     alignment and domain information
>gnl|CDD|232870 TIGR00198, cat_per_HPI, catalase/peroxidase HPI Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 242
PLN03030324 cationic peroxidase; Provisional 100.0
cd00693298 secretory_peroxidase Horseradish peroxidase and re 100.0
PLN02608289 L-ascorbate peroxidase 100.0
PF00141230 peroxidase: Peroxidase; InterPro: IPR002016 Peroxi 100.0
cd00691253 ascorbate_peroxidase Ascorbate peroxidases and cyt 100.0
PLN02879251 L-ascorbate peroxidase 100.0
cd00692328 ligninase Ligninase and other manganese-dependent 100.0
PLN02364250 L-ascorbate peroxidase 1 100.0
cd00649409 catalase_peroxidase_1 N-terminal catalytic domain 100.0
TIGR00198 716 cat_per_HPI catalase/peroxidase HPI. Note that the 100.0
PRK15061 726 catalase/hydroperoxidase HPI(I); Provisional 100.0
cd00314255 plant_peroxidase_like Heme-dependent peroxidases s 100.0
cd08201264 plant_peroxidase_like_1 Uncharacterized family of 100.0
cd08200297 catalase_peroxidase_2 C-terminal non-catalytic dom 99.97
COG0376 730 KatG Catalase (peroxidase I) [Inorganic ion transp 99.95
TIGR00198716 cat_per_HPI catalase/peroxidase HPI. Note that the 99.93
PRK15061726 catalase/hydroperoxidase HPI(I); Provisional 99.93
COG0376730 KatG Catalase (peroxidase I) [Inorganic ion transp 99.08
>PLN03030 cationic peroxidase; Provisional Back     alignment and domain information 
Probab=100.00  E-value=5e-76  Score=533.70  Aligned_cols=218  Identities=46%  Similarity=0.776  Sum_probs=206.3

Q ss_pred             ChHHHHhhCCCCCCHHHHHHHHHHHHHHHhCCCceeccCCCCCCcccccccccCCCCCCCCCHHHHHHHHHHcCCCCcch
Q 026183            1 MKAAVEKACPRVVSCADILTIAAEQSVALSGGPSWTNLLGRRDSRTANRTLANQNLPSPFDTLDRLKASFRNVGLNDNFD   80 (242)
Q Consensus         1 iK~~le~~cp~~VScADiialAa~~Av~~~GGP~~~v~~GR~D~~~s~~~~~~~~lP~p~~~~~~l~~~F~~~Gl~~~~e   80 (242)
                      ||++||++||++|||||||+||||+||+++|||.|+|++||+|+.++...++. +||.|+.++++|++.|+++||+.+ |
T Consensus       102 iK~~~e~~CPg~VSCADilalAarDaV~~~gGP~~~v~~GRrDg~~s~~~~~~-~LP~p~~~~~~l~~~F~~~Gl~~~-D  179 (324)
T PLN03030        102 AKTQLEAACPGVVSCADILALAARDSVVLTNGLTWPVPTGRRDGRVSLASDAS-NLPGFTDSIDVQKQKFAAKGLNTQ-D  179 (324)
T ss_pred             HHHHHHhhCCCcccHHHHHHHHhhccccccCCCceeeeccccCCCCCCccccc-CCcCCCCCHHHHHHHHHHcCCCHH-H
Confidence            79999999999999999999999999999999999999999999998777664 899999999999999999999999 9


Q ss_pred             hHhhhcccccccccccccccccccCCCCC-CCCCCCCHHHHHHHHhcCCCCCCCCccccCCCCCCcccCHHHHHHHhccC
Q 026183           81 LVALSGAHTFGRAQCRFFSVRLFNFNNTG-NPDPTLDATFLQQLRQLCPQGGNGSVLTNLDVTTPNVFDNKYFSNLRNRK  159 (242)
Q Consensus        81 ~VaL~GaHTiG~~hc~~f~~rl~~f~g~~-~~dp~~~~~~~~~L~~~Cp~~~~~~~~~~lD~~tp~~fDN~Yy~~l~~~~  159 (242)
                      ||+||||||||++||.+|.+|||||.|++ .+||+||+.|+..|+..||..++....++||+.||.+|||+||++|+.++
T Consensus       180 lVaLsGAHTiG~ahC~~f~~Rlynf~~~~~~~Dp~~d~~~~~~L~~~Cp~~~~~~~~~~lD~~Tp~~FDn~Yy~nll~~r  259 (324)
T PLN03030        180 LVTLVGGHTIGTTACQFFRYRLYNFTTTGNGADPSIDASFVPQLQALCPQNGDGSRRIALDTGSSNRFDASFFSNLKNGR  259 (324)
T ss_pred             heeeeeccccceeeeeccccccccccCCCCCCCCchhHHHHHHHhccCCCCCCCCccccCCCCCCcccccHHHHHHHhcC
Confidence            99999999999999999999999999875 58999999999999999996433334678999999999999999999999


Q ss_pred             ccccchhhhhcCCchhHHHHHHHHhhCH----HHHHHHHHHHHHHhhcCCCCCCCCCcccccccccc
Q 026183          160 GLLQSDQELFSTPGADTIDIVNVFRKNQ----AAFFKSFVTSMIRMGNLKPLTGNEGEIRLNCRRVN  222 (242)
Q Consensus       160 glL~SD~~L~~d~~~~t~~~V~~yA~d~----~~F~~~Fa~Am~KM~~lgv~tG~~GeiR~~C~~~N  222 (242)
                      |+|+|||+|+.|+  +|+.+|++||.|+    ++|+++|++||+|||+|+|+||.+|||||+|+.+|
T Consensus       260 GlL~SDq~L~~d~--~T~~~V~~~A~~~~~~~~~F~~~Fa~AmvKMg~i~VlTG~~GEIRk~C~~vN  324 (324)
T PLN03030        260 GILESDQKLWTDA--STRTFVQRFLGVRGLAGLNFNVEFGRSMVKMSNIGVKTGTNGEIRKVCSAIN  324 (324)
T ss_pred             CCcCCchHhhcCc--cHHHHHHHHhcccccchhhhHHHHHHHHHHHccCCCCCCCCCceeccccccC
Confidence            9999999999999  9999999999874    59999999999999999999999999999999998

>cd00693 secretory_peroxidase Horseradish peroxidase and related secretory plant peroxidases Back     alignment and domain information
>PLN02608 L-ascorbate peroxidase Back     alignment and domain information
>PF00141 peroxidase: Peroxidase; InterPro: IPR002016 Peroxidases are haem-containing enzymes that use hydrogen peroxide as the electron acceptor to catalyse a number of oxidative reactions Back     alignment and domain information
>cd00691 ascorbate_peroxidase Ascorbate peroxidases and cytochrome C peroxidases Back     alignment and domain information
>PLN02879 L-ascorbate peroxidase Back     alignment and domain information
>cd00692 ligninase Ligninase and other manganese-dependent fungal peroxidases Back     alignment and domain information
>PLN02364 L-ascorbate peroxidase 1 Back     alignment and domain information
>cd00649 catalase_peroxidase_1 N-terminal catalytic domain of catalase-peroxidases Back     alignment and domain information
>TIGR00198 cat_per_HPI catalase/peroxidase HPI Back     alignment and domain information
>PRK15061 catalase/hydroperoxidase HPI(I); Provisional Back     alignment and domain information
>cd00314 plant_peroxidase_like Heme-dependent peroxidases similar to plant peroxidases Back     alignment and domain information
>cd08201 plant_peroxidase_like_1 Uncharacterized family of plant peroxidase-like proteins Back     alignment and domain information
>cd08200 catalase_peroxidase_2 C-terminal non-catalytic domain of catalase-peroxidases Back     alignment and domain information
>COG0376 KatG Catalase (peroxidase I) [Inorganic ion transport and metabolism] Back     alignment and domain information
>TIGR00198 cat_per_HPI catalase/peroxidase HPI Back     alignment and domain information
>PRK15061 catalase/hydroperoxidase HPI(I); Provisional Back     alignment and domain information
>COG0376 KatG Catalase (peroxidase I) [Inorganic ion transport and metabolism] Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query242
3atj_A309 Heme Ligand Mutant Of Recombinant Horseradish Perox 3e-80
1w4w_A323 Ferric Horseradish Peroxidase C1a In Complex With F 4e-80
1kzm_A308 Distal Heme Pocket Mutant (r38s/h42e) Of Recombinan 6e-80
4atj_A309 Distal Heme Pocket Mutant (H42e) Of Recombinant Hor 6e-80
6atj_A308 Recombinant Horseradish Peroxidase C Complex With F 8e-80
1gwo_A309 Recombinant Horseradish Peroxidase C1a Ala170gln Le 1e-79
1gwu_A309 Recombinant Horseradish Peroxidase C1a Ala140gly Le 1e-79
2atj_A308 Recombinant Horseradish Peroxidase Complex With Ben 2e-79
1pa2_A306 Arabidopsis Thaliana Peroxidase A2 Length = 306 2e-79
1gw2_A308 Recombinant Horseradish Peroxidase C1a Thr171ser In 2e-79
1gx2_A309 Recombinant Horseradish Peroxidase Phe209ser Comple 6e-79
1atj_A306 Recombinant Horseradish Peroxidase C1a Length = 306 7e-79
2ylj_A306 Horse Radish Peroxidase, Mutant S167y Length = 306 2e-78
1fhf_A304 The Structure Of Soybean Peroxidase Length = 304 1e-72
4a5g_A308 Raphanus Sativus Anionic Peroxidase. Length = 308 3e-72
1qgj_A300 Arabidopsis Thaliana Peroxidase N Length = 300 1e-60
1sch_A294 Peanut Peroxidase Length = 294 1e-54
3hdl_A304 Crystal Structure Of Highly Glycosylated Peroxidase 1e-39
1bgp_A309 Crystal Structure Of Barley Grain Peroxidase 1 Leng 2e-38
1iyn_A295 Crystal Structure Of Chloroplastic Ascorbate Peroxi 4e-10
2cl4_X261 Ascorbate Peroxidase R172a Mutant Length = 261 3e-07
3zcg_A261 Ascorbate Peroxidase W41a-h42c Mutant Length = 261 5e-07
2vcf_X264 Structure Of Isoniazid (Inh) Bound To Cytosolic Soy 5e-07
2ggn_X261 Conformational Mobility In The Active Site Of A Hem 5e-07
1oaf_A261 Ascobate Peroxidase From Soybean Cytosol In Complex 5e-07
3zch_A261 Ascorbate Peroxidase W41a-h42m Mutant Length = 261 5e-07
2vcs_A261 Structure Of Isoniazid (Inh) Bound To Cytosolic Soy 5e-07
3zcy_A249 Ascorbate Peroxidase W41a-h42y Mutant Length = 249 5e-07
2y6b_A249 Ascorbate Peroxidase R38k Mutant Length = 249 5e-07
2xif_A249 The Structure Of Ascorbate Peroxidase Compound Ii L 5e-07
2y6a_A249 Ascorbate Peroxidase R38a Mutant Length = 249 6e-07
1apx_A249 Crystal Structure Of Recombinant Ascorbate Peroxida 1e-06
4ged_A268 Crystal Structure Of The Leishmania Major Peroxidas 1e-06
3riv_A271 The Crystal Structure Of Leishmania Major Peroxidas 1e-06
3riw_A271 The Crystal Structure Of Leishmania Major Peroxidas 1e-06
1jci_A294 Stabilization Of The Engineered Cation-Binding Loop 3e-05
1stq_A294 Cyrstal Structure Of Cytochrome C Peroxidase Mutant 7e-05
1krj_A294 Engineering Calcium-Binding Site Into Cytochrome C 1e-04
1sog_A294 Cyrstal Structure Of Cytochrome C Peroxidase Mutant 3e-04
1jdr_A294 Crystal Structure Of A Proximal Domain Potassium Bi 5e-04
>pdb|3ATJ|A Chain A, Heme Ligand Mutant Of Recombinant Horseradish Peroxidase In Complex With Benzhydroxamic Acid Length = 309 Back     alignment and structure 
Iteration: 1

 Score =  294 bits (752), Expect = 3e-80,   Method: Compositional matrix adjust.
 Identities = 147/226 (65%), Positives = 173/226 (76%), Gaps = 1/226 (0%)
Query: 1   MKAAVEKACPRVVSCADILTIAAEQSVALSGGPSWTNLLGRRDSRTANRTLANQNLPSPF 60
           MKAAVE ACPR VSCAD+LTIAA+QSV L+GGPSW   LGRRDS  A   LAN NLP+PF
Sbjct: 84  MKAAVESACPRTVSCADLLTIAAQQSVTLAGGPSWRVPLGRRDSLQAFLDLANANLPAPF 143
Query: 61  DTLDRLKASFRNVGLNDNFDLVALSGAHTFGRAQCRFFSVRLFNFNNTGNPDPTLDATFL 120
            TL +LK SFRNVGLN + DLVALSG HTFG+ QCRF   RL+NF+NTG PDPTL+ T+L
Sbjct: 144 FTLPQLKDSFRNVGLNRSSDLVALSGGHTFGKNQCRFIMDRLYNFSNTGLPDPTLNTTYL 203
Query: 121 QQLRQLCPQGGNGSVLTNLDVTTPNVFDNKYFSNLRNRKGLLQSDQELFSTPGA-DTIDI 179
           Q LR LCP  GN S L ++D+ TP +FDNKY+ NL  +KGL+QSDQELFS+P A DTI +
Sbjct: 204 QTLRGLCPLNGNLSALVDMDLRTPTIFDNKYYVNLEEQKGLIQSDQELFSSPNATDTIPL 263
Query: 180 VNVFRKNQAAFFKSFVTSMIRMGNLKPLTGNEGEIRLNCRRVNGNS 225
           V  F  +   FF +FV +M RMGN+ PLTG +G+IRLNCR VN NS
Sbjct: 264 VRSFANSTQTFFNAFVEAMDRMGNITPLTGTQGQIRLNCRVVNSNS 309
>pdb|1W4W|A Chain A, Ferric Horseradish Peroxidase C1a In Complex With Formate Length = 323 Back     alignment and structure
>pdb|1KZM|A Chain A, Distal Heme Pocket Mutant (r38s/h42e) Of Recombinant Horseradish Peroxidase C (hrp C) Length = 308 Back     alignment and structure
>pdb|4ATJ|A Chain A, Distal Heme Pocket Mutant (H42e) Of Recombinant Horseradish Peroxidase In Complex With Benzhydroxamic Acid Length = 309 Back     alignment and structure
>pdb|6ATJ|A Chain A, Recombinant Horseradish Peroxidase C Complex With Ferulic Acid Length = 308 Back     alignment and structure
>pdb|1GWO|A Chain A, Recombinant Horseradish Peroxidase C1a Ala170gln Length = 309 Back     alignment and structure
>pdb|1GWU|A Chain A, Recombinant Horseradish Peroxidase C1a Ala140gly Length = 309 Back     alignment and structure
>pdb|2ATJ|A Chain A, Recombinant Horseradish Peroxidase Complex With Benzhydroxamic Acid Length = 308 Back     alignment and structure
>pdb|1PA2|A Chain A, Arabidopsis Thaliana Peroxidase A2 Length = 306 Back     alignment and structure
>pdb|1GW2|A Chain A, Recombinant Horseradish Peroxidase C1a Thr171ser In Complex With Ferulic Acid Length = 308 Back     alignment and structure
>pdb|1GX2|A Chain A, Recombinant Horseradish Peroxidase Phe209ser Complex With Benzhydroxamic Acid Length = 309 Back     alignment and structure
>pdb|1ATJ|A Chain A, Recombinant Horseradish Peroxidase C1a Length = 306 Back     alignment and structure
>pdb|2YLJ|A Chain A, Horse Radish Peroxidase, Mutant S167y Length = 306 Back     alignment and structure
>pdb|1FHF|A Chain A, The Structure Of Soybean Peroxidase Length = 304 Back     alignment and structure
>pdb|4A5G|A Chain A, Raphanus Sativus Anionic Peroxidase. Length = 308 Back     alignment and structure
>pdb|1QGJ|A Chain A, Arabidopsis Thaliana Peroxidase N Length = 300 Back     alignment and structure
>pdb|1SCH|A Chain A, Peanut Peroxidase Length = 294 Back     alignment and structure
>pdb|3HDL|A Chain A, Crystal Structure Of Highly Glycosylated Peroxidase From Royal Palm Tree Length = 304 Back     alignment and structure
>pdb|1BGP|A Chain A, Crystal Structure Of Barley Grain Peroxidase 1 Length = 309 Back     alignment and structure
>pdb|1IYN|A Chain A, Crystal Structure Of Chloroplastic Ascorbate Peroxidase From Tobacco Plants And Structural Insights For Its Instability Length = 295 Back     alignment and structure
>pdb|2CL4|X Chain X, Ascorbate Peroxidase R172a Mutant Length = 261 Back     alignment and structure
>pdb|3ZCG|A Chain A, Ascorbate Peroxidase W41a-h42c Mutant Length = 261 Back     alignment and structure
>pdb|2VCF|X Chain X, Structure Of Isoniazid (Inh) Bound To Cytosolic Soybean Ascorbate Peroxidase Length = 264 Back     alignment and structure
>pdb|2GGN|X Chain X, Conformational Mobility In The Active Site Of A Heme Peroxidase Length = 261 Back     alignment and structure
>pdb|1OAF|A Chain A, Ascobate Peroxidase From Soybean Cytosol In Complex With Ascorbate Length = 261 Back     alignment and structure
>pdb|3ZCH|A Chain A, Ascorbate Peroxidase W41a-h42m Mutant Length = 261 Back     alignment and structure
>pdb|2VCS|A Chain A, Structure Of Isoniazid (Inh) Bound To Cytosolic Soybean Ascorbate Peroxidase Mutant H42a Length = 261 Back     alignment and structure
>pdb|3ZCY|A Chain A, Ascorbate Peroxidase W41a-h42y Mutant Length = 249 Back     alignment and structure
>pdb|2Y6B|A Chain A, Ascorbate Peroxidase R38k Mutant Length = 249 Back     alignment and structure
>pdb|2XIF|A Chain A, The Structure Of Ascorbate Peroxidase Compound Ii Length = 249 Back     alignment and structure
>pdb|2Y6A|A Chain A, Ascorbate Peroxidase R38a Mutant Length = 249 Back     alignment and structure
>pdb|1APX|A Chain A, Crystal Structure Of Recombinant Ascorbate Peroxidase Length = 249 Back     alignment and structure
>pdb|4GED|A Chain A, Crystal Structure Of The Leishmania Major Peroxidase-Cytochrome C Complex Length = 268 Back     alignment and structure
>pdb|3RIV|A Chain A, The Crystal Structure Of Leishmania Major Peroxidase Length = 271 Back     alignment and structure
>pdb|3RIW|A Chain A, The Crystal Structure Of Leishmania Major Peroxidase Mutant C197t Length = 271 Back     alignment and structure
>pdb|1JCI|A Chain A, Stabilization Of The Engineered Cation-Binding Loop In Cytochrome C Peroxidase (Ccp) Length = 294 Back     alignment and structure
>pdb|1STQ|A Chain A, Cyrstal Structure Of Cytochrome C Peroxidase Mutant: Ccpk2m3 Length = 294 Back     alignment and structure
>pdb|1KRJ|A Chain A, Engineering Calcium-Binding Site Into Cytochrome C Peroxidase (Ccp) Length = 294 Back     alignment and structure
>pdb|1SOG|A Chain A, Cyrstal Structure Of Cytochrome C Peroxidase Mutant: Ccpk2m2 Length = 294 Back     alignment and structure
>pdb|1JDR|A Chain A, Crystal Structure Of A Proximal Domain Potassium Binding Variant Of Cytochrome C Peroxidase Length = 294 Back     alignment and structure

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query242
1fhf_A304 SEED coat peroxidase; oxidoreductase; HET: HEM; 2. 1e-135
1gwu_A309 Peroxidase C1A; oxidoreductase, glycoprotein, heme 1e-135
1pa2_A306 Peroxidase, ATP A2; oxidoreductase; HET: HEM; 1.45 1e-134
3hdl_A304 Royal PALM TREE peroxidase; glycosylated, oxidored 1e-127
1qgj_A300 Peroxidase N; oxidoreductase; HET: HEM GSH; 1.90A 1e-127
1sch_A294 PNP, peanut peroxidase, major cationic isozyme; ca 1e-124
1bgp_A309 Barley grain peroxidase; chromoprotein, oxidoreduc 1e-118
1iyn_A295 Chloroplastic ascorbate peroxidase; hydrogen perox 9e-73
3m5q_A357 Manganese peroxidase 1; heme, Mn(II)-binding site, 2e-50
3fmu_A331 VersatIle peroxidase VPL2; class II (fungal) perox 1e-49
2vcn_A261 Ascorbate peroxidase; INH, APX, isoniazid, oxidore 1e-46
3q3u_A338 Lignin peroxidase; oxidoreductase; HET: HEM; 1.85A 4e-44
1llp_A343 LIP4.15, lignin peroxidase; heme protein, glyco pr 6e-44
2e39_A344 Peroxidase; heme protein, coordination geometry of 1e-43
3riv_A271 Ascorbate peroxidase; alpha helical bundle, heme p 1e-17
3e2o_A294 CCP, cytochrome C peroxidase; cytochrome C peroxid 7e-15
>1fhf_A SEED coat peroxidase; oxidoreductase; HET: HEM; 2.80A {Glycine max} SCOP: a.93.1.1 Length = 304 Back     alignment and structure
 Score =  381 bits (981), Expect = e-135
 Identities = 146/223 (65%), Positives = 166/223 (74%), Gaps = 1/223 (0%)

Query: 1   MKAAVEKACPRVVSCADILTIAAEQSVALSGGPSWTNLLGRRDSRTANRTLANQNLPSPF 60
           +K AVE +CP  VSCADIL IAAE +  L GGP W   LGRRDS TANRTLANQNLP+PF
Sbjct: 83  IKTAVENSCPDTVSCADILAIAAEIASVLGGGPGWPVPLGRRDSLTANRTLANQNLPAPF 142

Query: 61  DTLDRLKASFRNVGLNDNFDLVALSGAHTFGRAQCRFFSVRLFNFNNTGNPDPTLDATFL 120
             L +LKASF   GLN   DLV LSG HTFGRA+C  F  RL+NF+NTGNPDPTL+ T+L
Sbjct: 143 FNLTQLKASFAVQGLNTL-DLVTLSGGHTFGRARCSTFINRLYNFSNTGNPDPTLNTTYL 201

Query: 121 QQLRQLCPQGGNGSVLTNLDVTTPNVFDNKYFSNLRNRKGLLQSDQELFSTPGADTIDIV 180
           + LR  CPQ   G  LTNLD++TP+ FDN+Y+SNL    GLLQSDQELFSTPGADTI IV
Sbjct: 202 EVLRARCPQNATGDNLTNLDLSTPDQFDNRYYSNLLQLNGLLQSDQELFSTPGADTIPIV 261

Query: 181 NVFRKNQAAFFKSFVTSMIRMGNLKPLTGNEGEIRLNCRRVNG 223
           N F  NQ  FF +F  SMI+MGN+  LTG+EGEIRL C  VNG
Sbjct: 262 NSFSSNQNTFFSNFRVSMIKMGNIGVLTGDEGEIRLQCNFVNG 304
>1gwu_A Peroxidase C1A; oxidoreductase, glycoprotein, heme, multigene family, signal,; HET: HEM; 1.31A {Armoracia rusticana} SCOP: a.93.1.1 PDB: 1w4w_A* 1w4y_A* 1gwo_A* 2atj_A* 1gwt_A* 3atj_A* 1gx2_A* 7atj_A* 1h55_A* 1h58_A* 1h5a_A* 1h5c_A* 1h5d_A* 1h5e_A* 1h5f_A* 1h57_A* 1h5h_A* 1h5i_A* 1h5j_A* 1h5k_A* ... Length = 309 Back     alignment and structure
>1pa2_A Peroxidase, ATP A2; oxidoreductase; HET: HEM; 1.45A {Arabidopsis thaliana} SCOP: a.93.1.1 PDB: 1qo4_A* Length = 306 Back     alignment and structure
>3hdl_A Royal PALM TREE peroxidase; glycosylated, oxidoreductase; HET: HEM MES NAG FUC MAN; 1.85A {Roystonea regia} Length = 304 Back     alignment and structure
>1qgj_A Peroxidase N; oxidoreductase; HET: HEM GSH; 1.90A {Arabidopsis thaliana} SCOP: a.93.1.1 Length = 300 Back     alignment and structure
>1sch_A PNP, peanut peroxidase, major cationic isozyme; calcium binding, glycosylation, oxidoreductase; HET: NAG HEM; 2.56A {Arachis hypogaea} SCOP: a.93.1.1 Length = 294 Back     alignment and structure
>1bgp_A Barley grain peroxidase; chromoprotein, oxidoreductase; HET: HEM; 1.90A {Hordeum vulgare} SCOP: a.93.1.1 Length = 309 Back     alignment and structure
>1iyn_A Chloroplastic ascorbate peroxidase; hydrogen peroxide, tobacco plant, stromal ascorbate peroxidase, oxidoreductase; HET: HEM; 1.60A {Nicotiana tabacum} SCOP: a.93.1.1 Length = 295 Back     alignment and structure
>3m5q_A Manganese peroxidase 1; heme, Mn(II)-binding site, Ca(II)-binding site, glycosylation, ultrahigh resolution, calcium; HET: NAG MAN HEM; 0.93A {Phanerochaete chrysosporium} PDB: 1mnp_A* 1yyg_A* 1yzp_A* 1yzr_A* 1yyd_A* 3m8m_A* 1mn1_A* 1mn2_A* Length = 357 Back     alignment and structure
>3fmu_A VersatIle peroxidase VPL2; class II (fungal) peroxidases, protoporphyrin IX, electron T lignin peroxidase, lignin degradation; HET: HEM; 1.04A {Pleurotus eryngii} PDB: 3fjw_A* 2boq_A* 3fm1_A* 3fm4_A* 3fm6_A* 3fkg_A* 2w23_A* 2vka_A* Length = 331 Back     alignment and structure
>2vcn_A Ascorbate peroxidase; INH, APX, isoniazid, oxidoreductase; HET: HEM ISZ; 1.20A {Glycine max} PDB: 2ggn_X* 2ghd_X* 2ghe_X* 2ghc_X* 2vnx_X* 2vnz_X* 2vo2_X* 2wd4_A* 1oaf_A* 1oag_A* 1v0h_X* 2ghh_X* 2ghk_X* 2vcf_X* 2cl4_X* 2vcs_A* 2xi6_A* 2xif_A* 2xih_A* 2xj6_A* ... Length = 261 Back     alignment and structure
>3q3u_A Lignin peroxidase; oxidoreductase; HET: HEM; 1.85A {Trametes cervina} Length = 338 Back     alignment and structure
>1llp_A LIP4.15, lignin peroxidase; heme protein, glyco protein,, oxidoreductase; HET: NAG MAN A2G HEM; 1.70A {Phanerochaete chrysosporium} SCOP: a.93.1.1 PDB: 1lga_A* 1b80_A* 1b82_A* 1b85_A* 1qpa_A* Length = 343 Back     alignment and structure
>2e39_A Peroxidase; heme protein, coordination geometry of heme iron, ARP, perox oxidoreductase; HET: NAG MAN HEM; 1.30A {'arthromyces ramosus'} SCOP: a.93.1.1 PDB: 1arp_A* 1arv_A* 1arw_A* 1arx_A* 1ary_A* 1c8i_A* 1ck6_A* 1gza_A* 1gzb_A* 1hsr_A* 1aru_A* 2e3a_A* 2e3b_A* 1lyk_A* 1lyc_A* 1ly9_A* 1h3j_A* 1ly8_A* Length = 344 Back     alignment and structure
>3riv_A Ascorbate peroxidase; alpha helical bundle, heme peroxidase, oxidoreductase; HET: HEM; 1.76A {Leishmania major} PDB: 3riw_A* Length = 271 Back     alignment and structure
>3e2o_A CCP, cytochrome C peroxidase; cytochrome C peroxidase (CCP), heme, hydrogen peroxide, iron, metal-binding, mitochondrion; HET: HEM; 1.06A {Saccharomyces cerevisiae} PDB: 1z53_A* 1kok_A* 1sbm_A* 1sdq_A* 1s73_A* 1zby_A* 1zbz_A* 2b0z_A* 2b10_A* 2b11_A* 2b12_A* 2cyp_A* 2ycg_A* 2v23_A* 1ebe_A* 3r98_A* 3r99_A* 1mkr_A* 1mk8_A* 1mkq_A* ... Length = 294 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query242
3hdl_A304 Royal PALM TREE peroxidase; glycosylated, oxidored 100.0
1gwu_A309 Peroxidase C1A; oxidoreductase, glycoprotein, heme 100.0
1pa2_A306 Peroxidase, ATP A2; oxidoreductase; HET: HEM; 1.45 100.0
1fhf_A304 SEED coat peroxidase; oxidoreductase; HET: HEM; 2. 100.0
1qgj_A300 Peroxidase N; oxidoreductase; HET: HEM GSH; 1.90A 100.0
1sch_A294 PNP, peanut peroxidase, major cationic isozyme; ca 100.0
1bgp_A309 Barley grain peroxidase; chromoprotein, oxidoreduc 100.0
1iyn_A295 Chloroplastic ascorbate peroxidase; hydrogen perox 100.0
3riv_A271 Ascorbate peroxidase; alpha helical bundle, heme p 100.0
2vcn_A261 Ascorbate peroxidase; INH, APX, isoniazid, oxidore 100.0
1llp_A343 LIP4.15, lignin peroxidase; heme protein, glyco pr 100.0
2e39_A344 Peroxidase; heme protein, coordination geometry of 100.0
3m5q_A357 Manganese peroxidase 1; heme, Mn(II)-binding site, 100.0
3fmu_A331 VersatIle peroxidase VPL2; class II (fungal) perox 100.0
3q3u_A338 Lignin peroxidase; oxidoreductase; HET: HEM; 1.85A 100.0
2cca_A 740 Peroxidase/catalase T; oxidoreductase, catalase-pe 100.0
1itk_A 731 Catalase-peroxidase; heme protein, oxidoreductase; 100.0
1ub2_A 720 Catalase-peroxidase; KATG, cyanobacteria, oxidored 100.0
3n3r_A 748 Catalase-peroxidase; E198A variant, tuberclosis, i 100.0
3vli_A 737 Catalase-peroxidase 2; oxidoreductase; HET: HEM; 1 100.0
3ut2_A 764 Catalase-peroxidase 2; KATG, fungal, heme enzyme, 100.0
3e2o_A294 CCP, cytochrome C peroxidase; cytochrome C peroxid 100.0
1u2k_A309 Peroxidase/catalase HPI; KATG, catalase-peroxidase 100.0
3vli_A737 Catalase-peroxidase 2; oxidoreductase; HET: HEM; 1 100.0
1itk_A731 Catalase-peroxidase; heme protein, oxidoreductase; 100.0
3n3r_A748 Catalase-peroxidase; E198A variant, tuberclosis, i 100.0
2cca_A740 Peroxidase/catalase T; oxidoreductase, catalase-pe 100.0
3ut2_A764 Catalase-peroxidase 2; KATG, fungal, heme enzyme, 100.0
1ub2_A720 Catalase-peroxidase; KATG, cyanobacteria, oxidored 100.0
3rrw_A268 Thylakoid lumenal 29 kDa protein, chloroplastic; c 100.0
>3hdl_A Royal PALM TREE peroxidase; glycosylated, oxidoreductase; HET: HEM MES NAG FUC MAN; 1.85A {Roystonea regia} SCOP: a.93.1.0 Back     alignment and structure
Probab=100.00  E-value=1.6e-79  Score=553.80  Aligned_cols=219  Identities=41%  Similarity=0.683  Sum_probs=213.5

Q ss_pred             ChHHHHhhCCCCCCHHHHHHHHHHHHHHHhCCCceeccCCCCCCcccccccccCCCCCCCCCHHHHHHHHHHcCCCCcch
Q 026183            1 MKAAVEKACPRVVSCADILTIAAEQSVALSGGPSWTNLLGRRDSRTANRTLANQNLPSPFDTLDRLKASFRNVGLNDNFD   80 (242)
Q Consensus         1 iK~~le~~cp~~VScADiialAa~~Av~~~GGP~~~v~~GR~D~~~s~~~~~~~~lP~p~~~~~~l~~~F~~~Gl~~~~e   80 (242)
                      ||++||++||++|||||||+||||+||+++|||.|+|++||+|+.++....++.+||+|+.++++|++.|++|||+++ |
T Consensus        83 iK~~le~~Cp~~VScADilalAardav~~~GGP~~~v~~GRrD~~~s~~~~~~~~lP~p~~~~~~l~~~F~~~Gl~~~-d  161 (304)
T 3hdl_A           83 AKSAVEAACPQTVSCADILAFAARDSANLAGNITYQVPSGRRDGTVSLASEANAQIPSPLFNATQLINSFANKTLTAD-E  161 (304)
T ss_dssp             HHHHHHHHSTTTSCHHHHHHHHHHHHHHHHHCCCCCCEECCCBCSCCCHHHHHHHSCCTTCCHHHHHHHHHTTTCCHH-H
T ss_pred             HHHHHHhhCCCCccHHHHHHHHHhhhhhccCCCccccccCccCCCCCCccccccCCCCCCCCHHHHHHHHHHcCCCHH-H
Confidence            799999999999999999999999999999999999999999999998877777899999999999999999999999 9


Q ss_pred             hHhhhcccccccccccccccccccCCCCCCCCCCCCHHHHHHHHhcCCCCCC--CCccccCCCCCCcccCHHHHHHHhcc
Q 026183           81 LVALSGAHTFGRAQCRFFSVRLFNFNNTGNPDPTLDATFLQQLRQLCPQGGN--GSVLTNLDVTTPNVFDNKYFSNLRNR  158 (242)
Q Consensus        81 ~VaL~GaHTiG~~hc~~f~~rl~~f~g~~~~dp~~~~~~~~~L~~~Cp~~~~--~~~~~~lD~~tp~~fDN~Yy~~l~~~  158 (242)
                      |||||||||||++||.+|.+|||||+|++.+||+|++.|++.|+..||...+  +++.++||+.||.+|||+||++|+.+
T Consensus       162 ~VaLsGaHTiG~ahC~~f~~Rly~f~~~~~~DP~ld~~~a~~L~~~Cp~~~~~~~~~~~~lD~~TP~~FDN~Yy~nL~~~  241 (304)
T 3hdl_A          162 MVTLSGAHSIGVAHCSSFTNRLYNFNSGSGIDPTLSPSYAALLRNTCPANSTRFTPITVSLDIITPSVLDNMYYTGVQLT  241 (304)
T ss_dssp             HHHHGGGGGSSEEEGGGTGGGTSSCSSSSSSCTTSCHHHHHHHHHHSCTTCCTTSCCEEESCSSSTTSCSTHHHHHHHTT
T ss_pred             hhhhhccccccccccchhhhhhcccCCCCCCCCcccHHHHHHHhccCCCCCCCCCccccCCCCCCcccccHHHHHHHHhC
Confidence            9999999999999999999999999998889999999999999999998766  78889999999999999999999999


Q ss_pred             CccccchhhhhcCCchhHHHHHHHHhhCHHHHHHHHHHHHHHhhcCCCCCCCCCcccccccccc
Q 026183          159 KGLLQSDQELFSTPGADTIDIVNVFRKNQAAFFKSFVTSMIRMGNLKPLTGNEGEIRLNCRRVN  222 (242)
Q Consensus       159 ~glL~SD~~L~~d~~~~t~~~V~~yA~d~~~F~~~Fa~Am~KM~~lgv~tG~~GeiR~~C~~~N  222 (242)
                      +|||+|||+|+.|+  +|+.+|++||.|+++|+++|++||+||++|+|+||.+||||++|+++|
T Consensus       242 ~glL~SDq~L~~d~--~t~~~V~~yA~~~~~F~~~Fa~AmvKmg~igv~tg~~GeIR~~C~~~N  303 (304)
T 3hdl_A          242 LGLLTSDQALVTEA--NLSAAVKANAMNLTAWASKFAQAMVKMGQIEVLTGTQGEIRTNCSVVN  303 (304)
T ss_dssp             CCCSHHHHGGGSSH--HHHHHHHHHHHCHHHHHHHHHHHHHHHTTTTCCCTTSSBCCSBTTBCC
T ss_pred             cCCCCCCHHHhcCc--cHHHHHHHhccCHHHHHHHHHHHHHHHHhcCCCCCCCCeeeCCccccC
Confidence            99999999999999  999999999999999999999999999999999999999999999999
>1gwu_A Peroxidase C1A; oxidoreductase, glycoprotein, heme, multigene family, signal,; HET: HEM; 1.31A {Armoracia rusticana} SCOP: a.93.1.1 PDB: 1w4w_A* 1w4y_A* 1gwo_A* 2atj_A* 1gwt_A* 3atj_A* 1gx2_A* 7atj_A* 1h55_A* 1h58_A* 1h5a_A* 1h5c_A* 1h5d_A* 1h5e_A* 1h5f_A* 1h57_A* 1h5h_A* 1h5i_A* 1h5j_A* 1h5k_A* ... Back     alignment and structure
>1pa2_A Peroxidase, ATP A2; oxidoreductase; HET: HEM; 1.45A {Arabidopsis thaliana} SCOP: a.93.1.1 PDB: 1qo4_A* Back     alignment and structure
>1fhf_A SEED coat peroxidase; oxidoreductase; HET: HEM; 2.80A {Glycine max} SCOP: a.93.1.1 Back     alignment and structure
>1qgj_A Peroxidase N; oxidoreductase; HET: HEM GSH; 1.90A {Arabidopsis thaliana} SCOP: a.93.1.1 Back     alignment and structure
>1sch_A PNP, peanut peroxidase, major cationic isozyme; calcium binding, glycosylation, oxidoreductase; HET: NAG HEM; 2.56A {Arachis hypogaea} SCOP: a.93.1.1 Back     alignment and structure
>1bgp_A Barley grain peroxidase; chromoprotein, oxidoreductase; HET: HEM; 1.90A {Hordeum vulgare} SCOP: a.93.1.1 Back     alignment and structure
>1iyn_A Chloroplastic ascorbate peroxidase; hydrogen peroxide, tobacco plant, stromal ascorbate peroxidase, oxidoreductase; HET: HEM; 1.60A {Nicotiana tabacum} SCOP: a.93.1.1 Back     alignment and structure
>3riv_A Ascorbate peroxidase; alpha helical bundle, heme peroxidase, oxidoreductase; HET: HEM; 1.76A {Leishmania major} PDB: 3riw_A* 4ged_A* Back     alignment and structure
>2vcn_A Ascorbate peroxidase; INH, APX, isoniazid, oxidoreductase; HET: HEM ISZ; 1.20A {Glycine max} PDB: 2ggn_X* 2ghd_X* 2ghe_X* 2ghc_X* 2vnx_X* 2vnz_X* 2vo2_X* 2wd4_A* 1oaf_A* 1oag_A* 1v0h_X* 2ghh_X* 2ghk_X* 2vcf_X* 2cl4_X* 2vcs_A* 2xi6_A* 2xif_A* 2xih_A* 2xj6_A* ... Back     alignment and structure
>1llp_A LIP4.15, lignin peroxidase; heme protein, glyco protein,, oxidoreductase; HET: NAG MAN A2G HEM; 1.70A {Phanerochaete chrysosporium} SCOP: a.93.1.1 PDB: 1lga_A* 1b80_A* 1b82_A* 1b85_A* 1qpa_A* Back     alignment and structure
>2e39_A Peroxidase; heme protein, coordination geometry of heme iron, ARP, perox oxidoreductase; HET: NAG MAN HEM; 1.30A {'arthromyces ramosus'} SCOP: a.93.1.1 PDB: 1arp_A* 1arv_A* 1arw_A* 1arx_A* 1ary_A* 1c8i_A* 1ck6_A* 1gza_A* 1gzb_A* 1hsr_A* 1aru_A* 2e3a_A* 2e3b_A* 1lyk_A* 1lyc_A* 1ly9_A* 1h3j_A* 1ly8_A* Back     alignment and structure
>3m5q_A Manganese peroxidase 1; heme, Mn(II)-binding site, Ca(II)-binding site, glycosylation, ultrahigh resolution, calcium; HET: NAG MAN HEM; 0.93A {Phanerochaete chrysosporium} SCOP: a.93.1.1 PDB: 1mnp_A* 1yyg_A* 1yzp_A* 1yzr_A* 1yyd_A* 3m8m_A* 1mn1_A* 1mn2_A* Back     alignment and structure
>3fmu_A VersatIle peroxidase VPL2; class II (fungal) peroxidases, protoporphyrin IX, electron T lignin peroxidase, lignin degradation; HET: HEM; 1.04A {Pleurotus eryngii} PDB: 3fjw_A* 2boq_A* 3fm1_A* 3fm4_A* 3fm6_A* 3fkg_A* 2w23_A* 2vka_A* 4fcn_A* 4g05_A* 4fcs_A* 4fef_A* 4fdq_A* Back     alignment and structure
>3q3u_A Lignin peroxidase; oxidoreductase; HET: HEM; 1.85A {Trametes cervina} SCOP: a.93.1.0 Back     alignment and structure
>2cca_A Peroxidase/catalase T; oxidoreductase, catalase-peroxidase, KATG, heme, hydrogen peroxide, iron, metal-binding, organic radical; HET: HEM; 2.0A {Mycobacterium tuberculosis} SCOP: a.93.1.3 a.93.1.3 PDB: 1sj2_A* 2ccd_A* Back     alignment and structure
>1itk_A Catalase-peroxidase; heme protein, oxidoreductase; HET: HEM; 2.00A {Haloarcula marismortui} SCOP: a.93.1.3 a.93.1.3 Back     alignment and structure
>1ub2_A Catalase-peroxidase; KATG, cyanobacteria, oxidoreductase; HET: HEM; 2.40A {Synechococcus elongatus} SCOP: a.93.1.3 a.93.1.3 Back     alignment and structure
>3n3r_A Catalase-peroxidase; E198A variant, tuberclosis, isonicotini hydrazide binding, oxidoreductase; HET: TOX HEM; 1.60A {Burkholderia pseudomallei} PDB: 3n3s_A* 3n3o_A* 2fxj_A* 3n3p_A* 2fxg_A* 3n3n_A* 2fxh_A* 2dv2_A* 3n3q_A* 2dv1_A* 1x7u_A* 1mwv_A* 2b2o_A* 2b2q_A* 2b2r_A* 2b2s_A* Back     alignment and structure
>3vli_A Catalase-peroxidase 2; oxidoreductase; HET: HEM; 1.70A {Haloarcula marismortui} PDB: 3vlh_A* 3vlj_A* 3vlk_A* 3vll_A* 3uw8_A* 3vlm_A* 1itk_A* Back     alignment and structure
>3ut2_A Catalase-peroxidase 2; KATG, fungal, heme enzyme, oxidoreducta; HET: TOX HEM; 1.55A {Magnaporthe oryzae 70-15} Back     alignment and structure
>3e2o_A CCP, cytochrome C peroxidase; cytochrome C peroxidase (CCP), heme, hydrogen peroxide, iron, metal-binding, mitochondrion; HET: HEM; 1.06A {Saccharomyces cerevisiae} SCOP: a.93.1.1 PDB: 4a71_A* 1z53_A* 1kok_A* 1sbm_A* 1sdq_A* 1s73_A* 1zby_A* 1zbz_A* 2b0z_A* 2b10_A* 2b11_A* 2b12_A* 2cyp_A* 2ycg_A* 4a6z_A* 2v23_A* 1ebe_A* 3r98_A* 3r99_A* 1mkr_A* ... Back     alignment and structure
>1u2k_A Peroxidase/catalase HPI; KATG, catalase-peroxidase, C-terminal domain, oxidoreductase; 2.00A {Escherichia coli} SCOP: a.93.1.3 PDB: 1u2l_A 1u2j_A Back     alignment and structure
>3vli_A Catalase-peroxidase 2; oxidoreductase; HET: HEM; 1.70A {Haloarcula marismortui} PDB: 3vlh_A* 3vlj_A* 3vlk_A* 3vll_A* 3uw8_A* 3vlm_A* 1itk_A* Back     alignment and structure
>1itk_A Catalase-peroxidase; heme protein, oxidoreductase; HET: HEM; 2.00A {Haloarcula marismortui} SCOP: a.93.1.3 a.93.1.3 Back     alignment and structure
>3n3r_A Catalase-peroxidase; E198A variant, tuberclosis, isonicotini hydrazide binding, oxidoreductase; HET: TOX HEM; 1.60A {Burkholderia pseudomallei} PDB: 3n3s_A* 3n3o_A* 2fxj_A* 3n3p_A* 2fxg_A* 3n3n_A* 2fxh_A* 2dv2_A* 3n3q_A* 2dv1_A* 1x7u_A* 1mwv_A* 2b2o_A* 2b2q_A* 2b2r_A* 2b2s_A* Back     alignment and structure
>2cca_A Peroxidase/catalase T; oxidoreductase, catalase-peroxidase, KATG, heme, hydrogen peroxide, iron, metal-binding, organic radical; HET: HEM; 2.0A {Mycobacterium tuberculosis} SCOP: a.93.1.3 a.93.1.3 PDB: 1sj2_A* 2ccd_A* Back     alignment and structure
>3ut2_A Catalase-peroxidase 2; KATG, fungal, heme enzyme, oxidoreducta; HET: TOX HEM; 1.55A {Magnaporthe oryzae 70-15} Back     alignment and structure
>1ub2_A Catalase-peroxidase; KATG, cyanobacteria, oxidoreductase; HET: HEM; 2.40A {Synechococcus elongatus} SCOP: a.93.1.3 a.93.1.3 Back     alignment and structure
>3rrw_A Thylakoid lumenal 29 kDa protein, chloroplastic; chloroplast thylakoid lumen, plant protein; 2.50A {Arabidopsis thaliana} Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 242
d1fhfa_304 a.93.1.1 (A:) Plant peroxidase {Soybean (Glycine m 6e-89
d1pa2a_306 a.93.1.1 (A:) Plant peroxidase {Mouse-ear cress (A 1e-84
d1qgja_300 a.93.1.1 (A:) Plant peroxidase {Mouse-ear cress (A 2e-79
d1gwua_307 a.93.1.1 (A:) Plant peroxidase {Horseradish (Armor 3e-79
d1scha_294 a.93.1.1 (A:) Plant peroxidase {Peanut (Arachis hy 1e-70
d1bgpa_309 a.93.1.1 (A:) Plant peroxidase {Barley (Hordeum vu 3e-69
d1yyda1357 a.93.1.1 (A:1-357) Fungal peroxidase (ligninase) { 3e-48
d1llpa_343 a.93.1.1 (A:) Fungal peroxidase (ligninase) {White 3e-44
d2e39a1336 a.93.1.1 (A:9-344) Fungal peroxidase (ligninase) { 2e-40
d1iyna_275 a.93.1.1 (A:) Ascorbate peroxidase {Common tobacco 7e-31
d2euta1291 a.93.1.1 (A:4-294) Cytochrome c peroxidase, CCP {B 1e-30
d1oafa_250 a.93.1.1 (A:) Ascorbate peroxidase {Soybean (Glyci 5e-25
>d1fhfa_ a.93.1.1 (A:) Plant peroxidase {Soybean (Glycine max) [TaxId: 3847]} Length = 304 Back     information, alignment and structure

class: All alpha proteins
fold: Heme-dependent peroxidases
superfamily: Heme-dependent peroxidases
family: CCP-like
domain: Plant peroxidase
species: Soybean (Glycine max) [TaxId: 3847]

 Score =  263 bits (673), Expect = 6e-89
 Identities = 146/223 (65%), Positives = 166/223 (74%), Gaps = 1/223 (0%)

Query: 1   MKAAVEKACPRVVSCADILTIAAEQSVALSGGPSWTNLLGRRDSRTANRTLANQNLPSPF 60
           +K AVE +CP  VSCADIL IAAE +  L GGP W   LGRRDS TANRTLANQNLP+PF
Sbjct: 83  IKTAVENSCPDTVSCADILAIAAEIASVLGGGPGWPVPLGRRDSLTANRTLANQNLPAPF 142

Query: 61  DTLDRLKASFRNVGLNDNFDLVALSGAHTFGRAQCRFFSVRLFNFNNTGNPDPTLDATFL 120
             L +LKASF   GLN   DLV LSG HTFGRA+C  F  RL+NF+NTGNPDPTL+ T+L
Sbjct: 143 FNLTQLKASFAVQGLNTL-DLVTLSGGHTFGRARCSTFINRLYNFSNTGNPDPTLNTTYL 201

Query: 121 QQLRQLCPQGGNGSVLTNLDVTTPNVFDNKYFSNLRNRKGLLQSDQELFSTPGADTIDIV 180
           + LR  CPQ   G  LTNLD++TP+ FDN+Y+SNL    GLLQSDQELFSTPGADTI IV
Sbjct: 202 EVLRARCPQNATGDNLTNLDLSTPDQFDNRYYSNLLQLNGLLQSDQELFSTPGADTIPIV 261

Query: 181 NVFRKNQAAFFKSFVTSMIRMGNLKPLTGNEGEIRLNCRRVNG 223
           N F  NQ  FF +F  SMI+MGN+  LTG+EGEIRL C  VNG
Sbjct: 262 NSFSSNQNTFFSNFRVSMIKMGNIGVLTGDEGEIRLQCNFVNG 304
>d1pa2a_ a.93.1.1 (A:) Plant peroxidase {Mouse-ear cress (Arabidopsis thaliana), peroxidase A2 [TaxId: 3702]} Length = 306 Back     information, alignment and structure
>d1qgja_ a.93.1.1 (A:) Plant peroxidase {Mouse-ear cress (Arabidopsis thaliana), peroxidase N [TaxId: 3702]} Length = 300 Back     information, alignment and structure
>d1gwua_ a.93.1.1 (A:) Plant peroxidase {Horseradish (Armoracia rusticana) [TaxId: 3704]} Length = 307 Back     information, alignment and structure
>d1scha_ a.93.1.1 (A:) Plant peroxidase {Peanut (Arachis hypogaea) [TaxId: 3818]} Length = 294 Back     information, alignment and structure
>d1bgpa_ a.93.1.1 (A:) Plant peroxidase {Barley (Hordeum vulgare), peroxidase 1 [TaxId: 4513]} Length = 309 Back     information, alignment and structure
>d1yyda1 a.93.1.1 (A:1-357) Fungal peroxidase (ligninase) {Basidomycetos fungus (Phanerochaete chrysosporium) [TaxId: 5306]} Length = 357 Back     information, alignment and structure
>d1llpa_ a.93.1.1 (A:) Fungal peroxidase (ligninase) {White rot basidiomycete (Phanerochaete chrysosporium) [TaxId: 5306]} Length = 343 Back     information, alignment and structure
>d2e39a1 a.93.1.1 (A:9-344) Fungal peroxidase (ligninase) {Arthromyces ramosus [TaxId: 5451]} Length = 336 Back     information, alignment and structure
>d1iyna_ a.93.1.1 (A:) Ascorbate peroxidase {Common tobacco (Nicotiana tabacum) [TaxId: 4097]} Length = 275 Back     information, alignment and structure
>d2euta1 a.93.1.1 (A:4-294) Cytochrome c peroxidase, CCP {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 291 Back     information, alignment and structure
>d1oafa_ a.93.1.1 (A:) Ascorbate peroxidase {Soybean (Glycine max) [TaxId: 3847]} Length = 250 Back     information, alignment and structure

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query242
d1fhfa_304 Plant peroxidase {Soybean (Glycine max) [TaxId: 38 100.0
d1pa2a_306 Plant peroxidase {Mouse-ear cress (Arabidopsis tha 100.0
d1qgja_300 Plant peroxidase {Mouse-ear cress (Arabidopsis tha 100.0
d1bgpa_309 Plant peroxidase {Barley (Hordeum vulgare), peroxi 100.0
d1gwua_307 Plant peroxidase {Horseradish (Armoracia rusticana 100.0
d1scha_294 Plant peroxidase {Peanut (Arachis hypogaea) [TaxId 100.0
d1iyna_275 Ascorbate peroxidase {Common tobacco (Nicotiana ta 100.0
d1yyda1357 Fungal peroxidase (ligninase) {Basidomycetos fungu 100.0
d1oafa_250 Ascorbate peroxidase {Soybean (Glycine max) [TaxId 100.0
d2euta1291 Cytochrome c peroxidase, CCP {Baker's yeast (Sacch 100.0
d2e39a1336 Fungal peroxidase (ligninase) {Arthromyces ramosus 100.0
d1llpa_343 Fungal peroxidase (ligninase) {White rot basidiomy 100.0
d1mwva2308 Catalase-peroxidase KatG {Burkholderia pseudomalle 99.97
d1itka1406 Catalase-peroxidase KatG {Archaeon Haloarcula mari 99.97
d1mwva1406 Catalase-peroxidase KatG {Burkholderia pseudomalle 99.97
d2ccaa1410 Catalase-peroxidase KatG {Mycobacterium tuberculos 99.96
d1itka2308 Catalase-peroxidase KatG {Archaeon Haloarcula mari 99.96
d1ub2a2294 Catalase-peroxidase KatG {Synechococcus sp. pcc 79 99.96
d1u2ka_292 Catalase-peroxidase KatG {Burkholderia pseudomalle 99.96
d1ub2a1406 Catalase-peroxidase KatG {Synechococcus sp. pcc 79 99.96
d2ccaa2285 Catalase-peroxidase KatG {Mycobacterium tuberculos 99.91
>d1fhfa_ a.93.1.1 (A:) Plant peroxidase {Soybean (Glycine max) [TaxId: 3847]} Back     information, alignment and structure
class: All alpha proteins
fold: Heme-dependent peroxidases
superfamily: Heme-dependent peroxidases
family: CCP-like
domain: Plant peroxidase
species: Soybean (Glycine max) [TaxId: 3847]

Probab=100.00  E-value=5e-75  Score=523.66  Aligned_cols=222  Identities=66%  Similarity=1.042  Sum_probs=214.3

Q ss_pred             ChHHHHhhCCCCCCHHHHHHHHHHHHHHHhCCCceeccCCCCCCcccccccccCCCCCCCCCHHHHHHHHHHcCCCCcch
Q 026183            1 MKAAVEKACPRVVSCADILTIAAEQSVALSGGPSWTNLLGRRDSRTANRTLANQNLPSPFDTLDRLKASFRNVGLNDNFD   80 (242)
Q Consensus         1 iK~~le~~cp~~VScADiialAa~~Av~~~GGP~~~v~~GR~D~~~s~~~~~~~~lP~p~~~~~~l~~~F~~~Gl~~~~e   80 (242)
                      ||++||+.||++|||||||+||||+||+++|||.|+|++||+|+.++...++..+||.|+.++++|+..|++|||+.+ |
T Consensus        83 iK~~le~~cp~~VScADIlalAardAv~~~GGP~~~v~~GR~D~~~s~~~~~~~~lP~p~~~~~~l~~~F~~~Gl~~~-d  161 (304)
T d1fhfa_          83 IKTAVENSCPDTVSCADILAIAAEIASVLGGGPGWPVPLGRRDSLTANRTLANQNLPAPFFNLTQLKASFAVQGLNTL-D  161 (304)
T ss_dssp             HHHHHHTTSTTTSCHHHHHHHHHHHHHHTTTCCCCCCCBCCCBCSCCCHHHHHHHSCCTTCCHHHHHHHHHHTTCCHH-H
T ss_pred             HHHHHHhhCCCccCHHHHHHHHHhhhhhhcCCCcccccCCCcCcCccccccccccCCCCCCCHHHHHHHHHHcCCCHH-H
Confidence            699999999999999999999999999999999999999999999998877777899999999999999999999999 9


Q ss_pred             hHhhhcccccccccccccccccccCCCCCCCCCCCCHHHHHHHHhcCCCCCCCCccccCCCCCCcccCHHHHHHHhccCc
Q 026183           81 LVALSGAHTFGRAQCRFFSVRLFNFNNTGNPDPTLDATFLQQLRQLCPQGGNGSVLTNLDVTTPNVFDNKYFSNLRNRKG  160 (242)
Q Consensus        81 ~VaL~GaHTiG~~hc~~f~~rl~~f~g~~~~dp~~~~~~~~~L~~~Cp~~~~~~~~~~lD~~tp~~fDN~Yy~~l~~~~g  160 (242)
                      ||||+||||||++||.+|..|+|+|.+++.+||.+++.|+..|+..||.++...+...+|..||.+|||+||++++.++|
T Consensus       162 ~VaLsGaHTiG~ahc~~~~~rl~~~~~~~~~d~~~~~~~~~~L~~~c~~~~~~~~~~~~d~~tp~~fDn~Yy~~l~~~~g  241 (304)
T d1fhfa_         162 LVTLSGGHTFGRARCSTFINRLYNFSNTGNPDPTLNTTYLEVLRARCPQNATGDNLTNLDLSTPDQFDNRYYSNLLQLNG  241 (304)
T ss_dssp             HHHHGGGGGSCEEEGGGTGGGTSCGGGSSSCCTTSCHHHHHHHHHHSCSSCSSCCEEESCSSSTTSCSTHHHHHHHTTCC
T ss_pred             HHHHhhhhhhcccccccccccccCCCCCCCCCcccCHHHHHHHHHhcCCCCCCCcccccCCCCCCccccHHHHHHhhcCc
Confidence            99999999999999999999999999988999999999999999999998777778899999999999999999999999


Q ss_pred             cccchhhhhcCCchhHHHHHHHHhhCHHHHHHHHHHHHHHhhcCCCCCCCCCccccccccccC
Q 026183          161 LLQSDQELFSTPGADTIDIVNVFRKNQAAFFKSFVTSMIRMGNLKPLTGNEGEIRLNCRRVNG  223 (242)
Q Consensus       161 lL~SD~~L~~d~~~~t~~~V~~yA~d~~~F~~~Fa~Am~KM~~lgv~tG~~GeiR~~C~~~N~  223 (242)
                      +|+||++|+.|+.++|+++|++||+|+++|+++|++||+||++|+|+||.+||||++|+++|+
T Consensus       242 lL~SD~~L~~dp~~~t~~~V~~yA~d~~~F~~~F~~Am~Km~~lgv~tg~~GeiR~~C~~~N~  304 (304)
T d1fhfa_         242 LLQSDQELFSTPGADTIPIVNSFSSNQNTFFSNFRVSMIKMGNIGVLTGDEGEIRLQCNFVNG  304 (304)
T ss_dssp             SSHHHHTTTSSTTCSSHHHHHHHHHCHHHHHHHHHHHHHHHTTTTCCCTTSSBCCSBTTBCCC
T ss_pred             ccHhhHHHHhCCCchHHHHHHHHhhCHHHHHHHHHHHHHHHhcCCCCCCCCCcccCcccCcCC
Confidence            999999999997447999999999999999999999999999999999999999999999995
>d1pa2a_ a.93.1.1 (A:) Plant peroxidase {Mouse-ear cress (Arabidopsis thaliana), peroxidase A2 [TaxId: 3702]} Back     information, alignment and structure
>d1qgja_ a.93.1.1 (A:) Plant peroxidase {Mouse-ear cress (Arabidopsis thaliana), peroxidase N [TaxId: 3702]} Back     information, alignment and structure
>d1bgpa_ a.93.1.1 (A:) Plant peroxidase {Barley (Hordeum vulgare), peroxidase 1 [TaxId: 4513]} Back     information, alignment and structure
>d1gwua_ a.93.1.1 (A:) Plant peroxidase {Horseradish (Armoracia rusticana) [TaxId: 3704]} Back     information, alignment and structure
>d1scha_ a.93.1.1 (A:) Plant peroxidase {Peanut (Arachis hypogaea) [TaxId: 3818]} Back     information, alignment and structure
>d1iyna_ a.93.1.1 (A:) Ascorbate peroxidase {Common tobacco (Nicotiana tabacum) [TaxId: 4097]} Back     information, alignment and structure
>d1yyda1 a.93.1.1 (A:1-357) Fungal peroxidase (ligninase) {Basidomycetos fungus (Phanerochaete chrysosporium) [TaxId: 5306]} Back     information, alignment and structure
>d1oafa_ a.93.1.1 (A:) Ascorbate peroxidase {Soybean (Glycine max) [TaxId: 3847]} Back     information, alignment and structure
>d2euta1 a.93.1.1 (A:4-294) Cytochrome c peroxidase, CCP {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d2e39a1 a.93.1.1 (A:9-344) Fungal peroxidase (ligninase) {Arthromyces ramosus [TaxId: 5451]} Back     information, alignment and structure
>d1llpa_ a.93.1.1 (A:) Fungal peroxidase (ligninase) {White rot basidiomycete (Phanerochaete chrysosporium) [TaxId: 5306]} Back     information, alignment and structure
>d1mwva2 a.93.1.3 (A:441-748) Catalase-peroxidase KatG {Burkholderia pseudomallei [TaxId: 28450]} Back     information, alignment and structure
>d1itka1 a.93.1.3 (A:18-423) Catalase-peroxidase KatG {Archaeon Haloarcula marismortui [TaxId: 2238]} Back     information, alignment and structure
>d1mwva1 a.93.1.3 (A:35-440) Catalase-peroxidase KatG {Burkholderia pseudomallei [TaxId: 28450]} Back     information, alignment and structure
>d2ccaa1 a.93.1.3 (A:26-435) Catalase-peroxidase KatG {Mycobacterium tuberculosis [TaxId: 1773]} Back     information, alignment and structure
>d1itka2 a.93.1.3 (A:424-731) Catalase-peroxidase KatG {Archaeon Haloarcula marismortui [TaxId: 2238]} Back     information, alignment and structure
>d1ub2a2 a.93.1.3 (A:427-720) Catalase-peroxidase KatG {Synechococcus sp. pcc 7942 [TaxId: 1140]} Back     information, alignment and structure
>d1u2ka_ a.93.1.3 (A:) Catalase-peroxidase KatG {Burkholderia pseudomallei [TaxId: 28450]} Back     information, alignment and structure
>d1ub2a1 a.93.1.3 (A:21-426) Catalase-peroxidase KatG {Synechococcus sp. pcc 7942 [TaxId: 1140]} Back     information, alignment and structure
>d2ccaa2 a.93.1.3 (A:436-720) Catalase-peroxidase KatG {Mycobacterium tuberculosis [TaxId: 1773]} Back     information, alignment and structure