Citrus Sinensis ID: 026246

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-
Protein Sequence
MEKIAVMSVRSIRRAACVRSSIIAAANNHHLRHLSSSRSLFSLSSPAASIPSKSIPFDCRSSLVMSIGCNRSFSEDVAHMPVIRDPEIQRAFKDLMAADWGELPASVIHDAKSALSRNNDDKAGQEVLKNVFSAAEAVEEFIGIIMNIKMEFDDEIGLSGENVKPLSNELSSAIRTVYQRYATYLDAFGPDESYLRKKVETELGSKMIFLKMRCAGLGSEWGKVTVLGTSGLAGSYVEQRA
Secondary Structure (PSIPRED)
cccHHHHHHHHHHHHHHHHHHHHHHHHcccHHcccccccccccccccccccccccccccccccHHccccccccccccccccccccHHHHHHHHHHHHcccccccHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccccHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHcHHHHHHHHHHcccccccccEEEEEccccccccHHHcc
Secondary Structure Prediction (SSPRO)
cccHHHHHHHHHHHHHHHHHHHHHHHHccccccccccccHHcccccccccccccccHHcccccEHHcccccccccccccccccccHHHHHHHHHHHHccHHHccHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccccHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHccHEEEEEEEcccccccccEEEEEEcccccccEEEEcc
Coil and Loop (DISEMBL)
MEKIAVMSVRSIRRAACVRSSIIAAANNHhlrhlsssrslfslsspaasipsksipfdcrSSLVmsigcnrsfsedvahmpvirdpEIQRAFKDLMAadwgelpasvIHDAKsalsrnnddkAGQEVLKNVFSAAEAVEEFIGIIMNIKMefddeiglsgenvkpLSNELSSAIRTVYQRYATYldafgpdesylRKKVETELGSKMIFLKMRCaglgsewgkVTVLGTsglagsyveqra
Flexible Loop (DISEMBL)
MEKIAVMSVRSIRRAACVRSSIIAAANNHHLRHLSSSRSLFSLSSPAASIPSKSIPFDCRSSLVMSIGCNRSFSEDVAHMPVIRDPEIQRAFKDLMAADWGELPASVIHDAKSALSRNNDDKAGQEVLKNVFSAAEAVEEFIGIIMNIKMEFDDEIGLSGENVKPLSNELSSAIRTVYQRYATYldafgpdesylRKKVETELGSKMIFLKMRCAGLGSEWGKVTVLgtsglagsyveqra
Low Complexity Region (SEG)
MEKIAVMSVRSIRRAACVRSSIIAAANNHhlrhlsssrslfslsspaasipsksipfDCRSSLVMSIGCNRSFSEDVAHMPVIRDPEIQRAFKDLMAADWGELPASVIHDAKSALSRNNDDKAGQEVLKNVFSAAEAVEEFIGIIMNIKMEFDDEIGLSGENVKPLSNELSSAIRTVYQRYATYLDAFGPDESYLRKKVETELGSKMIFLKMRCAGLGSEWGKVTVLGTSGLAGSYVEQRA
Disordered region (IsUnstruct)
******MSVRSIRRAACVRSSIIAAANNHHL***********************IPFDCRSSLVMSIGCNRSFSEDVAHMPVIRDPEIQRAFKDLMAADWGELPASVIH*****************VLKNVFSAAEAVEEFIGIIMNIKMEFDDEIGLSGENVKPLSNELSSAIRTVYQRYATYLDAFGPDESYLRKKVETELGSKMIFLKMRCAGLGSEWGKVTVLGTSGLAG*******
Disordered Region (DISOPRED)
*********RSIRRAACVRSSIIAAANNHHLRHLSSSRS******************DCRSSLVMSIGCNRSFSEDVAHMPVIRDPEIQRAFKDLMAADWGELPASVIHDA**************EVLKNVFSAAEAVEEFIGIIMNIKMEFDDEIGLSGENVKPLSNELSSAIRTVYQRYATYLDAFGPDESYLRKKVETELGSKMIFLKMRCAGLGSEWGKVTVLGTSGLAGSYV****
Disordered Region (DISEMBL)
********VRSIRRAACVRSSIIAAANNHHLRHLSSSRSLFSLSSPAASIPSKSIPFDCRSSLVMSIGCNRSFSEDVAHMPVIRDPEIQRAFKDLMAADWGELPASVIHDAKSALSRNNDDKAGQEVLKNVFSAAEAVEEFIGIIMNIKMEFDDEIGLSGENVKPLSNELSSAIRTVYQRYATYLDAFGPDESYLRKKVETELGSKMIFLKMRCAGLGSEWGKVTVLGTSGLAGSYVEQRA
Disordered Region (DISPRO)
****AVMSVRSIRRAACVRSSIIAAANNHHLRHLSSSRSLFSLSSPAASIPSKSIPFDCRSSLVMSIGCNRSFSEDVAHMPVIRDPEIQRAFKDLMAADWGELPASVIHDAKSALSRNNDDKAGQEVLKNVFSAAEAVEEFIGIIMNIKMEFDDEIGLSGENVKPLSNELSSAIRTVYQRYATYLDAFGPDESYLRKKVETELGSKMIFLKMRCAGLGSEWGKVTVLGTSGLAGSYVEQR*
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MEKIAVMSVRSIRRAACVRSSIIAAANNHHLRHLSSSRSLFSLSSPAASIPSKSIPFDCRSSLVMSIGCNRSFSEDVAHMPVIRDPEIQRAFKDLMAADWGELPASVIHDAKSALSRNNDDKAGQEVLKNVFSAAEAVEEFIGIIMNIKMEFDDEIGLSGENVKPLSNELSSAIRTVYQRYATYLDAFGPDESYLRKKVETELGSKMIFLKMRCAGLGSEWGKVTVLGTSGLAGSYVEQRA
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	241	2.2.26 [Sep-21-2011]
Q9SX77	257	Uncharacterized protein A	yes	no	0.887	0.832	0.609	5e-76

>sp|Q9SX77|UMP6_ARATH Uncharacterized protein At1g47420, mitochondrial OS=Arabidopsis thaliana GN=At1g47420 PE=1 SV=1

 Score =  283 bits (725), Expect = 5e-76,   Method: Compositional matrix adjust.
 Identities = 139/228 (60%), Positives = 172/228 (75%), Gaps = 14/228 (6%)

Query: 27  NNHHL-RHLSSSRSLFSLSSPAAS------------IPSKSIPFDCRSSLVMSIGCNRSF 73
            +HH+ +HLS  R+L +++ P AS            I   S+  D +    M +G  R F
Sbjct: 31  GSHHIEKHLSRHRTLITVA-PNASVIGDVQINKGSFISYASVSRDLQYPRAMGMGQVRRF 89

Query: 74  SEDVAHMPVIRDPEIQRAFKDLMAADWGELPASVIHDAKSALSRNNDDKAGQEVLKNVFS 133
           SEDV+HMP + D ++  AFKDLMAADW ELP++V+ DAK+A+S+N DDKAGQE LKNVF 
Sbjct: 90  SEDVSHMPEMEDSDVLNAFKDLMAADWAELPSAVVKDAKTAISKNTDDKAGQEALKNVFR 149

Query: 134 AAEAVEEFIGIIMNIKMEFDDEIGLSGENVKPLSNELSSAIRTVYQRYATYLDAFGPDES 193
           AAEAVEEF GI+ +IKME DD IG+SGE VKPL N+++ A+RT YQRYA YLD+F P+E 
Sbjct: 150 AAEAVEEFGGILTSIKMEIDDSIGMSGEGVKPLPNDITDALRTAYQRYAEYLDSFEPEEV 209

Query: 194 YLRKKVETELGSKMIFLKMRCAGLGSEWGKVTVLGTSGLAGSYVEQRA 241
           YL+KKVE ELG+KMI LKMRC+GLGSEWGKVTVLGTSGL+GSYVEQRA
Sbjct: 210 YLKKKVEMELGTKMIHLKMRCSGLGSEWGKVTVLGTSGLSGSYVEQRA 257

Arabidopsis thaliana (taxid: 3702)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	241
224136704	239	predicted protein [Populus trichocarpa]	0.991	1.0	0.676	2e-88
118489030	239	unknown [Populus trichocarpa x Populus d	0.991	1.0	0.672	1e-87
225458573	242	PREDICTED: uncharacterized protein At1g4	0.991	0.987	0.617	2e-83
255538368	238	conserved hypothetical protein [Ricinus	0.975	0.987	0.651	9e-83
297852338	260	hypothetical protein ARALYDRAFT_473889 [	0.892	0.826	0.608	2e-74
18401719	257	succinate dehydrogenase 5 [Arabidopsis t	0.887	0.832	0.609	3e-74
449470049	241	PREDICTED: uncharacterized protein At1g4	0.983	0.983	0.579	1e-72
351726377	225	uncharacterized protein LOC100527337 [Gl	0.763	0.817	0.679	4e-71
388502854	238	unknown [Medicago truncatula]	0.763	0.773	0.652	4e-68
357437897	234	hypothetical protein MTR_1g019810 [Medic	0.763	0.786	0.652	2e-67

>gi|224136704|ref|XP_002326924.1| predicted protein [Populus trichocarpa] gi|118481849|gb|ABK92861.1| unknown [Populus trichocarpa] gi|222835239|gb|EEE73674.1| predicted protein [Populus trichocarpa]

 Score =  331 bits (848), Expect = 2e-88,   Method: Compositional matrix adjust.
 Identities = 163/241 (67%), Positives = 189/241 (78%), Gaps = 2/241 (0%)

Query: 1   MEKIAVMSVRSIRRAACVRSSIIAAANNHHLRHLSSSRSLFSLSSPAASIPSKSIPFDCR 60
           MEK+  +  R+I RAAC+ SS  AA +   LRH  +SRSLF++S+P+ S   K IP D R
Sbjct: 1   MEKMGAL--RTIYRAACLGSSRSAAISQSQLRHHLASRSLFTVSAPSVSTTPKRIPCDFR 58

Query: 61  SSLVMSIGCNRSFSEDVAHMPVIRDPEIQRAFKDLMAADWGELPASVIHDAKSALSRNND 120
           S   MS+G +RSFSEDV H P I+DPEI   FKDLMA +W ELP +V+ DAK ALS+N D
Sbjct: 59  SPFAMSLGSSRSFSEDVTHFPDIKDPEILNVFKDLMATNWDELPNAVVSDAKKALSKNTD 118

Query: 121 DKAGQEVLKNVFSAAEAVEEFIGIIMNIKMEFDDEIGLSGENVKPLSNELSSAIRTVYQR 180
           DK GQE+LKNVF AAEAVEEF G IM++KME DD IGLSGENVKPL    ++AIRT YQR
Sbjct: 119 DKVGQEILKNVFRAAEAVEEFGGKIMSLKMELDDIIGLSGENVKPLPELHANAIRTFYQR 178

Query: 181 YATYLDAFGPDESYLRKKVETELGSKMIFLKMRCAGLGSEWGKVTVLGTSGLAGSYVEQR 240
           YA YLD+FGP E YLRKKVETELGS+MI+LKMRC GLG+EWGKVTVLGTSGLAGSYVEQR
Sbjct: 179 YAAYLDSFGPGEGYLRKKVETELGSRMIYLKMRCCGLGAEWGKVTVLGTSGLAGSYVEQR 238

Query: 241 A 241
           A
Sbjct: 239 A 239

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|118489030|gb|ABK96322.1| unknown [Populus trichocarpa x Populus deltoides]

 Score =  328 bits (840), Expect = 1e-87,   Method: Compositional matrix adjust.
 Identities = 162/241 (67%), Positives = 188/241 (78%), Gaps = 2/241 (0%)

Query: 1   MEKIAVMSVRSIRRAACVRSSIIAAANNHHLRHLSSSRSLFSLSSPAASIPSKSIPFDCR 60
           MEK+  +  R+I RAAC+ SS  AA +   LRH  +SRSLF++S+P+ S   K IP D R
Sbjct: 1   MEKMGAL--RTIYRAACLGSSRSAAISQSQLRHHLASRSLFTVSAPSVSTTPKRIPCDFR 58

Query: 61  SSLVMSIGCNRSFSEDVAHMPVIRDPEIQRAFKDLMAADWGELPASVIHDAKSALSRNND 120
           S   MS+G +R FSEDV H P I+DPEI   FKDLMA +W ELP +V+ DAK ALS+N D
Sbjct: 59  SPFAMSLGSSRFFSEDVTHFPDIKDPEILNVFKDLMATNWDELPNAVVSDAKKALSKNTD 118

Query: 121 DKAGQEVLKNVFSAAEAVEEFIGIIMNIKMEFDDEIGLSGENVKPLSNELSSAIRTVYQR 180
           DKAGQ++LKNVF AAEAVEEF G IM++KME DD IGLSGENVKPL     +AIRT YQR
Sbjct: 119 DKAGQDILKNVFRAAEAVEEFGGKIMSLKMELDDIIGLSGENVKPLPELHDNAIRTFYQR 178

Query: 181 YATYLDAFGPDESYLRKKVETELGSKMIFLKMRCAGLGSEWGKVTVLGTSGLAGSYVEQR 240
           YA YLD+FGP E YLRKKVETELGS+MI+LKMRC GLG+EWGKVTVLGTSGLAGSYVEQR
Sbjct: 179 YAAYLDSFGPGEGYLRKKVETELGSRMIYLKMRCCGLGAEWGKVTVLGTSGLAGSYVEQR 238

Query: 241 A 241
           A
Sbjct: 239 A 239

Source: Populus trichocarpa x Populus deltoides

Species: Populus trichocarpa x Populus deltoides

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225458573|ref|XP_002284591.1| PREDICTED: uncharacterized protein At1g47420, mitochondrial [Vitis vinifera] gi|147811478|emb|CAN63226.1| hypothetical protein VITISV_002665 [Vitis vinifera] gi|302142337|emb|CBI19540.3| unnamed protein product [Vitis vinifera]

 Score =  314 bits (804), Expect = 2e-83,   Method: Compositional matrix adjust.
 Identities = 150/243 (61%), Positives = 189/243 (77%), Gaps = 4/243 (1%)

Query: 1   MEKIAVMSVRSIRRAACVRSSIIAAANNHH--LRHLSSSRSLFSLSSPAASIPSKSIPFD 58
           ME++ ++  RS+ R+A  RS   +A  NHH  LRH +SSRSLF+L +P A    +++P D
Sbjct: 1   MERMVLL--RSLFRSAAFRSCRFSAVVNHHQQLRHYASSRSLFNLFAPTAIASRQALPSD 58

Query: 59  CRSSLVMSIGCNRSFSEDVAHMPVIRDPEIQRAFKDLMAADWGELPASVIHDAKSALSRN 118
           CR+   +SIG  RSFSEDV+H+PVI+DPEIQ  FKDLMAA W ELP SVI  A   LS+N
Sbjct: 59  CRTPFAVSIGSTRSFSEDVSHLPVIKDPEIQTVFKDLMAASWDELPDSVISSANKVLSKN 118

Query: 119 NDDKAGQEVLKNVFSAAEAVEEFIGIIMNIKMEFDDEIGLSGENVKPLSNELSSAIRTVY 178
            DDKAGQE L NVF AAEA  EF GI++ ++ME DD +G+SGENVKPL +E  +A+ TV+
Sbjct: 119 TDDKAGQEALANVFRAAEAAVEFGGILVTLRMEIDDLVGISGENVKPLPDEFVNALVTVF 178

Query: 179 QRYATYLDAFGPDESYLRKKVETELGSKMIFLKMRCAGLGSEWGKVTVLGTSGLAGSYVE 238
           +RY TYLD+FGPDE++LRKKVE ELG+KMI LK+RC+ LG+EWGKVT+LGTSGL+GSYVE
Sbjct: 179 KRYTTYLDSFGPDEAFLRKKVEMELGTKMIHLKLRCSDLGAEWGKVTLLGTSGLSGSYVE 238

Query: 239 QRA 241
           QRA
Sbjct: 239 QRA 241

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255538368|ref|XP_002510249.1| conserved hypothetical protein [Ricinus communis] gi|223550950|gb|EEF52436.1| conserved hypothetical protein [Ricinus communis]

 Score =  312 bits (799), Expect = 9e-83,   Method: Compositional matrix adjust.
 Identities = 159/244 (65%), Positives = 193/244 (79%), Gaps = 9/244 (3%)

Query: 1   MEKIAVMSVRSIRRAACVRSSIIAAA-NNHHL--RHLSSSRSLFSLSSPAASIPSKSIPF 57
           MEK  V+ +RSI RAAC RSS IA A   HHL   HLSSSRS+FSL+S +  + S    F
Sbjct: 1   MEKKMVL-LRSICRAACFRSSRIADAFTQHHLLPHHLSSSRSIFSLASSSNRVSSD---F 56

Query: 58  DCRSSLVMSIGCNRSFSEDVAHMPVIRDPEIQRAFKDLMAADWGELPASVIHDAKSALSR 117
             R S  M +G  R FSEDV  +P I+DP++++AFK+LMAA W ELP  +++D K ALS+
Sbjct: 57  GYRFS--MGVGNRRCFSEDVTRLPAIQDPQVKKAFKNLMAASWDELPDPLLYDVKIALSK 114

Query: 118 NNDDKAGQEVLKNVFSAAEAVEEFIGIIMNIKMEFDDEIGLSGENVKPLSNELSSAIRTV 177
           N DDK+GQ++LKNVF AAEAVEEF GI+M++KME DD IGLSGENVKPLS+E ++A+RT 
Sbjct: 115 NTDDKSGQDILKNVFRAAEAVEEFGGILMSLKMELDDNIGLSGENVKPLSDEYANALRTA 174

Query: 178 YQRYATYLDAFGPDESYLRKKVETELGSKMIFLKMRCAGLGSEWGKVTVLGTSGLAGSYV 237
           +QRY+ YLDAFGPDE +LRKKVE ELGSKMI+LKMRC+GL S WGKVTVLGTSGLAGSY+
Sbjct: 175 FQRYSAYLDAFGPDEGFLRKKVEMELGSKMIYLKMRCSGLDSAWGKVTVLGTSGLAGSYI 234

Query: 238 EQRA 241
           EQRA
Sbjct: 235 EQRA 238

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297852338|ref|XP_002894050.1| hypothetical protein ARALYDRAFT_473889 [Arabidopsis lyrata subsp. lyrata] gi|297339892|gb|EFH70309.1| hypothetical protein ARALYDRAFT_473889 [Arabidopsis lyrata subsp. lyrata]

 Score =  284 bits (727), Expect = 2e-74,   Method: Compositional matrix adjust.
 Identities = 140/230 (60%), Positives = 175/230 (76%), Gaps = 15/230 (6%)

Query: 27  NNHHLR-HLSSSRSLFS------LSSPAASIP---SKSIPFDC-----RSSLVMSIGCNR 71
            +HH+  HLS  RSL +      L +P+AS+      +I + C     + S  + +G  R
Sbjct: 31  GSHHIEEHLSRHRSLMTVVDKSPLVTPSASVTIGKGSAISYGCARRDLQYSRAIGVGQVR 90

Query: 72  SFSEDVAHMPVIRDPEIQRAFKDLMAADWGELPASVIHDAKSALSRNNDDKAGQEVLKNV 131
            FSEDV+HMP ++D ++  AFKDLMAADW ELP++V+ +AKSA+S+N DDKAGQE LKNV
Sbjct: 91  RFSEDVSHMPEMKDSDVLNAFKDLMAADWAELPSAVVRNAKSAISKNTDDKAGQEALKNV 150

Query: 132 FSAAEAVEEFIGIIMNIKMEFDDEIGLSGENVKPLSNELSSAIRTVYQRYATYLDAFGPD 191
           F AAEAVEEF GI+ +IKME DD IG+SGE VKPL N+++ A+RT YQRYA YLD+F P+
Sbjct: 151 FRAAEAVEEFGGILTSIKMEIDDSIGMSGEGVKPLPNDITDALRTAYQRYADYLDSFEPE 210

Query: 192 ESYLRKKVETELGSKMIFLKMRCAGLGSEWGKVTVLGTSGLAGSYVEQRA 241
           E YL+KKVE ELG+KMI LKMRC+GLGSEWGKVTVLGTSGL+GSYVEQRA
Sbjct: 211 EVYLKKKVEMELGTKMIHLKMRCSGLGSEWGKVTVLGTSGLSGSYVEQRA 260

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|18401719|ref|NP_564506.1| succinate dehydrogenase 5 [Arabidopsis thaliana] gi|25091506|sp|Q9SX77.1|UMP6_ARATH RecName: Full=Uncharacterized protein At1g47420, mitochondrial; Flags: Precursor gi|5668814|gb|AAD46040.1|AC007519_25 ESTs gb|H36253 and gb|AA04251 come from this gene [Arabidopsis thaliana] gi|12744995|gb|AAK06877.1|AF344326_1 unknown protein [Arabidopsis thaliana] gi|14334512|gb|AAK59453.1| unknown protein [Arabidopsis thaliana] gi|15450966|gb|AAK96754.1| Unknown protein [Arabidopsis thaliana] gi|17104551|gb|AAL34164.1| unknown protein [Arabidopsis thaliana] gi|21536627|gb|AAM60959.1| unknown [Arabidopsis thaliana] gi|23198274|gb|AAN15664.1| Unknown protein [Arabidopsis thaliana] gi|332194047|gb|AEE32168.1| succinate dehydrogenase 5 [Arabidopsis thaliana]

 Score =  283 bits (725), Expect = 3e-74,   Method: Compositional matrix adjust.
 Identities = 139/228 (60%), Positives = 172/228 (75%), Gaps = 14/228 (6%)

Query: 27  NNHHL-RHLSSSRSLFSLSSPAAS------------IPSKSIPFDCRSSLVMSIGCNRSF 73
            +HH+ +HLS  R+L +++ P AS            I   S+  D +    M +G  R F
Sbjct: 31  GSHHIEKHLSRHRTLITVA-PNASVIGDVQINKGSFISYASVSRDLQYPRAMGMGQVRRF 89

Query: 74  SEDVAHMPVIRDPEIQRAFKDLMAADWGELPASVIHDAKSALSRNNDDKAGQEVLKNVFS 133
           SEDV+HMP + D ++  AFKDLMAADW ELP++V+ DAK+A+S+N DDKAGQE LKNVF 
Sbjct: 90  SEDVSHMPEMEDSDVLNAFKDLMAADWAELPSAVVKDAKTAISKNTDDKAGQEALKNVFR 149

Query: 134 AAEAVEEFIGIIMNIKMEFDDEIGLSGENVKPLSNELSSAIRTVYQRYATYLDAFGPDES 193
           AAEAVEEF GI+ +IKME DD IG+SGE VKPL N+++ A+RT YQRYA YLD+F P+E 
Sbjct: 150 AAEAVEEFGGILTSIKMEIDDSIGMSGEGVKPLPNDITDALRTAYQRYAEYLDSFEPEEV 209

Query: 194 YLRKKVETELGSKMIFLKMRCAGLGSEWGKVTVLGTSGLAGSYVEQRA 241
           YL+KKVE ELG+KMI LKMRC+GLGSEWGKVTVLGTSGL+GSYVEQRA
Sbjct: 210 YLKKKVEMELGTKMIHLKMRCSGLGSEWGKVTVLGTSGLSGSYVEQRA 257

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449470049|ref|XP_004152731.1| PREDICTED: uncharacterized protein At1g47420, mitochondrial-like [Cucumis sativus] gi|449496011|ref|XP_004160011.1| PREDICTED: uncharacterized protein At1g47420, mitochondrial-like [Cucumis sativus]

 Score =  278 bits (711), Expect = 1e-72,   Method: Compositional matrix adjust.
 Identities = 142/245 (57%), Positives = 181/245 (73%), Gaps = 8/245 (3%)

Query: 1   MEKIAVMSVRSIRRAACVRSSIIAAANNHHLRHLSS--SRSLFSLSS--PAASIPSKSIP 56
           MEK  ++  RS+ R+   RS  IA   + +L   +   +RS F LSS  P+ S   + + 
Sbjct: 1   MEKTVIL--RSLLRSVRARSYGIAGVTHRNLLQSNHQVARSFFYLSSHRPSFSDSPQRVS 58

Query: 57  FDCRSSLVMSIGCNRSFSEDVAHMPVIRDPEIQRAFKDLMAADWGELPASVIHDAKSALS 116
            DC  S    +G  R FS DV  MP I DP++Q  FKDLMAA W +LP +VI+D K+ALS
Sbjct: 59  SDC--SYPSGVGHARYFSADVVSMPTIEDPKLQNVFKDLMAASWDKLPEAVIYDVKTALS 116

Query: 117 RNNDDKAGQEVLKNVFSAAEAVEEFIGIIMNIKMEFDDEIGLSGENVKPLSNELSSAIRT 176
            + DDKAG+E+++NVF AAEA EEF  +++N+KME DD IGLSGENVKPLS+EL  A+ T
Sbjct: 117 GSTDDKAGKEIVENVFRAAEAAEEFGDMLINLKMEIDDSIGLSGENVKPLSDELKKALHT 176

Query: 177 VYQRYATYLDAFGPDESYLRKKVETELGSKMIFLKMRCAGLGSEWGKVTVLGTSGLAGSY 236
           V++RY  YLD+FGP+E+YLRKKVETELG+KMI+LKMRC+GLGSEWGKV+VLGTSGL+GSY
Sbjct: 177 VHERYIAYLDSFGPEENYLRKKVETELGTKMIYLKMRCSGLGSEWGKVSVLGTSGLSGSY 236

Query: 237 VEQRA 241
           VEQRA
Sbjct: 237 VEQRA 241

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|351726377|ref|NP_001238404.1| uncharacterized protein LOC100527337 [Glycine max] gi|255632117|gb|ACU16411.1| unknown [Glycine max]

 Score =  273 bits (699), Expect = 4e-71,   Method: Compositional matrix adjust.
 Identities = 125/184 (67%), Positives = 156/184 (84%)

Query: 58  DCRSSLVMSIGCNRSFSEDVAHMPVIRDPEIQRAFKDLMAADWGELPASVIHDAKSALSR 117
           +CRS L M +G  R +SEDV HMP I+DP +  AFKDLMA  W ELP SVI D K+ALS+
Sbjct: 42  ECRSPLSMGLGSMRFYSEDVTHMPNIKDPVLYNAFKDLMAVSWSELPDSVISDVKNALSK 101

Query: 118 NNDDKAGQEVLKNVFSAAEAVEEFIGIIMNIKMEFDDEIGLSGENVKPLSNELSSAIRTV 177
           N DDKAG+EV++NVF AA+A+EEF GI++++K+EFDD IG+SGE+VKPL + + +A+ T+
Sbjct: 102 NTDDKAGKEVVENVFCAAKAIEEFGGILISLKLEFDDSIGMSGEDVKPLPDHIKNALHTI 161

Query: 178 YQRYATYLDAFGPDESYLRKKVETELGSKMIFLKMRCAGLGSEWGKVTVLGTSGLAGSYV 237
           + RY+TYL++FGPDESYLRKKVETELG+KMI LKMRC+GLG+EWGKVTVLGTSGLA SYV
Sbjct: 162 FDRYSTYLNSFGPDESYLRKKVETELGAKMIHLKMRCSGLGAEWGKVTVLGTSGLARSYV 221

Query: 238 EQRA 241
           EQRA
Sbjct: 222 EQRA 225

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|388502854|gb|AFK39493.1| unknown [Medicago truncatula]

 Score =  263 bits (673), Expect = 4e-68,   Method: Compositional matrix adjust.
 Identities = 120/184 (65%), Positives = 151/184 (82%)

Query: 58  DCRSSLVMSIGCNRSFSEDVAHMPVIRDPEIQRAFKDLMAADWGELPASVIHDAKSALSR 117
           +CRS     IG  R +SE+V HMP I+DPE+   FKDL+A +W +L  +V+ DAK ALS+
Sbjct: 55  ECRSPFSNGIGSMRFYSEEVTHMPDIKDPELYSVFKDLLAENWSDLSDAVVSDAKHALSK 114

Query: 118 NNDDKAGQEVLKNVFSAAEAVEEFIGIIMNIKMEFDDEIGLSGENVKPLSNELSSAIRTV 177
           + +D+AG+EV+ NVF AA+AVEEF GI+  +KME DD IGLSGE+VKPL + + +A+RT+
Sbjct: 115 STEDEAGKEVVTNVFRAAQAVEEFGGILNTLKMEIDDSIGLSGEDVKPLPDHMQNALRTI 174

Query: 178 YQRYATYLDAFGPDESYLRKKVETELGSKMIFLKMRCAGLGSEWGKVTVLGTSGLAGSYV 237
           + RY TYL+AFGPDE+YLRKKVE ELG+KMI+LKMRC+GLGSEWGKVTVLGTSGLAGSYV
Sbjct: 175 FDRYTTYLNAFGPDENYLRKKVEQELGTKMIYLKMRCSGLGSEWGKVTVLGTSGLAGSYV 234

Query: 238 EQRA 241
           EQRA
Sbjct: 235 EQRA 238

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357437897|ref|XP_003589224.1| hypothetical protein MTR_1g019810 [Medicago truncatula] gi|355478272|gb|AES59475.1| hypothetical protein MTR_1g019810 [Medicago truncatula]

 Score =  261 bits (667), Expect = 2e-67,   Method: Compositional matrix adjust.
 Identities = 120/184 (65%), Positives = 150/184 (81%)

Query: 58  DCRSSLVMSIGCNRSFSEDVAHMPVIRDPEIQRAFKDLMAADWGELPASVIHDAKSALSR 117
           +CRS     IG  R +SE+V HMP I+DPE+   FKDL+A +W +L  +V+ DAK ALS+
Sbjct: 51  ECRSPFSNGIGSMRFYSEEVTHMPDIKDPELYSVFKDLLAENWSDLSDAVVSDAKHALSK 110

Query: 118 NNDDKAGQEVLKNVFSAAEAVEEFIGIIMNIKMEFDDEIGLSGENVKPLSNELSSAIRTV 177
           + +D+AG+EV+ NVF AA+AVEEF GI+  +KME DD IGLSGE+VKPL + + +A+RT+
Sbjct: 111 STEDEAGKEVVTNVFRAAQAVEEFGGILNTLKMEIDDSIGLSGEDVKPLPDHMQNALRTI 170

Query: 178 YQRYATYLDAFGPDESYLRKKVETELGSKMIFLKMRCAGLGSEWGKVTVLGTSGLAGSYV 237
           + RY TYL+AFGPDE+YLRKKVE ELG+KMI LKMRC+GLGSEWGKVTVLGTSGLAGSYV
Sbjct: 171 FDRYTTYLNAFGPDENYLRKKVEQELGTKMIHLKMRCSGLGSEWGKVTVLGTSGLAGSYV 230

Query: 238 EQRA 241
           EQRA
Sbjct: 231 EQRA 234

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	241
TAIR|locus:2015428	257	SDH5 "AT1G47420" [Arabidopsis	0.763	0.715	0.690	1.5e-65

TAIR|locus:2015428 SDH5 "AT1G47420" [Arabidopsis thaliana (taxid:3702)]

 Score = 667 (239.9 bits), Expect = 1.5e-65, P = 1.5e-65
 Identities = 127/184 (69%), Positives = 152/184 (82%)

Query:    58 DCRSSLVMSIGCNRSFSEDVAHMPVIRDPEIQRAFKDLMAADWGELPASVIHDAKSALSR 117
             D +    M +G  R FSEDV+HMP + D ++  AFKDLMAADW ELP++V+ DAK+A+S+
Sbjct:    74 DLQYPRAMGMGQVRRFSEDVSHMPEMEDSDVLNAFKDLMAADWAELPSAVVKDAKTAISK 133

Query:   118 NNDDKAGQEVLKNVFSAAEAVEEFIGIIMNIKMEFDDEIGLSGENVKPLSNELSSAIRTV 177
             N DDKAGQE LKNVF AAEAVEEF GI+ +IKME DD IG+SGE VKPL N+++ A+RT 
Sbjct:   134 NTDDKAGQEALKNVFRAAEAVEEFGGILTSIKMEIDDSIGMSGEGVKPLPNDITDALRTA 193

Query:   178 YQRYATYLDAFGPDESYLRKKVETELGSKMIFLKMRCAGLGSEWGKVTVLGTSGLAGSYV 237
             YQRYA YLD+F P+E YL+KKVE ELG+KMI LKMRC+GLGSEWGKVTVLGTSGL+GSYV
Sbjct:   194 YQRYAEYLDSFEPEEVYLKKKVEMELGTKMIHLKMRCSGLGSEWGKVTVLGTSGLSGSYV 253

Query:   238 EQRA 241
             EQRA
Sbjct:   254 EQRA 257


Parameters:
  V=100
  filter=SEG
  E=0.001

  ctxfactor=1.00

  Query                        -----  As Used  -----    -----  Computed  ----
  Frame  MatID Matrix name     Lambda    K       H      Lambda    K       H
   +0      0   BLOSUM62        0.317   0.131   0.370    same    same    same
               Q=9,R=2         0.244   0.0300  0.180     n/a     n/a     n/a

  Query
  Frame  MatID  Length  Eff.Length     E     S W   T  X   E2     S2
   +0      0      241       213   0.00084  112 3  11 22  0.37    33
                                                     31  0.49    35


Statistics:

  Database:  /share/blast/go-seqdb.fasta
   Title:  go_20130330-seqdb.fasta
   Posted:  5:47:42 AM PDT Apr 1, 2013
   Created:  5:47:42 AM PDT Apr 1, 2013
   Format:  XDF-1
   # of letters in database:  169,044,731
   # of sequences in database:  368,745
   # of database sequences satisfying E:  1
  No. of states in DFA:  603 (64 KB)
  Total size of DFA:  159 KB (2094 KB)
  Time to generate neighborhood:  0.00u 0.00s 0.00t   Elapsed:  00:00:00
  No. of threads or processors used:  24
  Search cpu time:  17.08u 0.10s 17.18t   Elapsed:  00:00:01
  Total cpu time:  17.08u 0.10s 17.18t   Elapsed:  00:00:01
  Start:  Fri May 10 04:22:14 2013   End:  Fri May 10 04:22:15 2013

GO:0003674 "molecular_function" evidence=ND

GO:0008150 "biological_process" evidence=ND

GO:0005739 "mitochondrion" evidence=IDA

GO:0005634 "nucleus" evidence=IDA

GO:0005749 "mitochondrial respiratory chain complex II" evidence=IDA

GO:0006511 "ubiquitin-dependent protein catabolic process" evidence=RCA

GO:0009853 "photorespiration" evidence=RCA

GO:0051788 "response to misfolded protein" evidence=RCA

GO:0080129 "proteasome core complex assembly" evidence=RCA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q9SX77	UMP6_ARATH	No assigned EC number	0.6096	0.8879	0.8326	yes	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input: eugene3.00400264 SubName- Full=Putative uncharacterized protein; (240 aa) (Populus trichocarpa)

Predicted Functional Partners:

Sorry, there are no predicted associations at the current settings.

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	241
pfam14290	238	pfam14290, DUF4370, Domain of unknown function (DU	1e-130
PLN02749	173	PLN02749, PLN02749, Uncharacterized protein At1g47	1e-105

>gnl|CDD|222654 pfam14290, DUF4370, Domain of unknown function (DUF4370)

 Score =  367 bits (945), Expect = e-130
 Identities = 163/243 (67%), Positives = 192/243 (79%), Gaps = 7/243 (2%)

Query: 1   MEKIAVMSVRSIRRAACVRSSIIAAANNHH--LRHLSSSRSLFSLSSPAASIPSKSIPFD 58
           MEK+  + +RS+ R+A  RSS  +AA+  H  LRH  SSRSLF L+SPA+      +  D
Sbjct: 1   MEKM--VLLRSLFRSAPFRSSRSSAASQGHHQLRHHLSSRSLFPLASPASP---SRLSSD 55

Query: 59  CRSSLVMSIGCNRSFSEDVAHMPVIRDPEIQRAFKDLMAADWGELPASVIHDAKSALSRN 118
           CR    MS G  R FSEDV H+P I+DPEI+ AFKDLMAA W ELP SV+ DAK ALS+N
Sbjct: 56  CRYPFAMSWGSRRFFSEDVTHLPAIKDPEIENAFKDLMAASWDELPDSVVSDAKKALSKN 115

Query: 119 NDDKAGQEVLKNVFSAAEAVEEFIGIIMNIKMEFDDEIGLSGENVKPLSNELSSAIRTVY 178
            DDKAGQE LKNVF AAEAVEEF GI++++KME DD IGLSGENVKPL + + +A+RT Y
Sbjct: 116 TDDKAGQEALKNVFRAAEAVEEFGGILVSLKMELDDLIGLSGENVKPLPDYIENALRTAY 175

Query: 179 QRYATYLDAFGPDESYLRKKVETELGSKMIFLKMRCAGLGSEWGKVTVLGTSGLAGSYVE 238
           QRY+TYLD+FGP+E YLRKKVETELG+KMI LKMRC+GLGSEWGKVTVLGTSGL+GSYVE
Sbjct: 176 QRYSTYLDSFGPEEGYLRKKVETELGTKMIHLKMRCSGLGSEWGKVTVLGTSGLSGSYVE 235

Query: 239 QRA 241
           QRA
Sbjct: 236 QRA 238

Length = 238

>gnl|CDD|178350 PLN02749, PLN02749, Uncharacterized protein At1g47420

 Score =  300 bits (771), Expect = e-105
 Identities = 125/171 (73%), Positives = 148/171 (86%)

Query: 71  RSFSEDVAHMPVIRDPEIQRAFKDLMAADWGELPASVIHDAKSALSRNNDDKAGQEVLKN 130
           R FSEDV+H+P I DPEI +AFKDLMAA W ELP SV++DAK ALS+N DDKAGQE LKN
Sbjct: 3   RRFSEDVSHLPEISDPEILKAFKDLMAASWDELPDSVVNDAKKALSKNTDDKAGQEALKN 62

Query: 131 VFSAAEAVEEFIGIIMNIKMEFDDEIGLSGENVKPLSNELSSAIRTVYQRYATYLDAFGP 190
           VF AAEAVEEF G +++++ME DD IGLSGENVKPL + + +A+ T YQRYA YLD+FGP
Sbjct: 63  VFRAAEAVEEFGGTLVSLRMEIDDLIGLSGENVKPLPDYIENALETAYQRYAAYLDSFGP 122

Query: 191 DESYLRKKVETELGSKMIFLKMRCAGLGSEWGKVTVLGTSGLAGSYVEQRA 241
           +E+YL+KKVE ELG+KMI LKMRC+GLGSEWGKVT+LGTSGL+GSYVEQRA
Sbjct: 123 EENYLKKKVEMELGTKMIHLKMRCSGLGSEWGKVTLLGTSGLSGSYVEQRA 173

Length = 173

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	241
PF14290	239	DUF4370: Domain of unknown function (DUF4370)	100.0
PLN02749	173	Uncharacterized protein At1g47420	100.0

>PF14290 DUF4370: Domain of unknown function (DUF4370)

Probab=100.00  E-value=3e-127  Score=834.07  Aligned_cols=237  Identities=66%  Similarity=1.039  Sum_probs=228.3

Q ss_pred             CchhhhHHHHHHHHHHhhhhhhHHhh--hhhhhhhhcccccccccCCCCCCCCCCCCCCCcCCcccccccccccccccCC
Q 026246            1 MEKIAVMSVRSIRRAACVRSSIIAAA--NNHHLRHLSSSRSLFSLSSPAASIPSKSIPFDCRSSLVMSIGCNRSFSEDVA   78 (241)
Q Consensus         1 mek~~m~~lrs~~r~a~~~s~~~~~~--~~~~~~~~s~~~sl~t~~~~~~~~ps~~~~~d~~~~~s~~~~~~R~fS~d~~   78 (241)
                      ||| ||+.||++||++|++|++.++.  .+|+++||.+.+++++++++.+  +. ++++||++||+||||++|+||+|++
T Consensus         1 m~~-~~~~lr~~~R~~~~~s~~~~~~~~~~~~~~~~~~~~s~~~l~~~~~--~~-~~~s~~~~~~a~s~~~~R~fS~d~~   76 (239)
T PF14290_consen    1 MEK-AMSALRSLLRSAALRSSRSSSASRSHHQIRHHLSSRSLFTLSSPSS--RN-RISSDCGGPFAMSWGSRRFFSEDVS   76 (239)
T ss_pred             Cch-HHHHHHHHHHHHHHHHhhhhhhhcchhhhhhhhhhccccCCCCccc--cc-cccccccCCcccccchhhhcccccc
Confidence            787 5999999999999999987555  3488999999999999988873  23 8899999999999999999999999


Q ss_pred             CCCCCCCHHHHHHHHHHHHcccCCCchhHHHHHHhhhcccCCchhHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhccCC
Q 026246           79 HMPVIRDPEIQRAFKDLMAADWGELPASVIHDAKSALSRNNDDKAGQEVLKNVFSAAEAVEEFIGIIMNIKMEFDDEIGL  158 (241)
Q Consensus        79 hlP~i~Dp~i~~afKdLmA~sW~elp~svv~~ak~alSk~tdDkaGqeaL~nvfrAAeAvEeFgGiL~~LrmeiDDl~Gl  158 (241)
                      |||+|+||+|++|||||||+||+|||++||++|||||||||||+||||||+||||||||||||||+|++||||||||||+
T Consensus        77 hlP~i~Dp~i~~afKdLmAasW~elp~svv~~akkalSk~tdD~AGqeaL~nvfRAAeAvEeFgG~L~tLrm~idDl~Gl  156 (239)
T PF14290_consen   77 HLPAISDPEIEKAFKDLMAASWDELPDSVVNEAKKALSKNTDDKAGQEALKNVFRAAEAVEEFGGILVTLRMEIDDLCGL  156 (239)
T ss_pred             cCCCCCCHHHHHHHHHHHhcchhhCCHHHHHHHHHHHhccCccchhHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHhcCC
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCCCCcCCchHHHHHHHHHHHHHHHHHhhcCCChhHHHHHHHHhhhhhhhhhhhhhcCCCCCccceEEeeccCCCccchh
Q 026246          159 SGENVKPLSNELSSAIRTVYQRYATYLDAFGPDESYLRKKVETELGSKMIFLKMRCAGLGSEWGKVTVLGTSGLAGSYVE  238 (241)
Q Consensus       159 sGEnVkPLP~~~~~Al~tay~rY~~YLdsFgpdE~yLrKKVE~ELGtkmI~LKmRcsGlgseWGKVtlLGTSGLsGSYvE  238 (241)
                      ||||||||||+++|||+|+|+||++|||||||||+|||||||+|||+|||||||||||||||||||||||||||||||||
T Consensus       157 sGEnv~PLP~~~~~Al~t~y~rY~~YL~sFgp~E~yLrKKVE~ELGtkmi~lKmRcsGlg~eWgkvtllGTSGlsGSYvE  236 (239)
T PF14290_consen  157 SGENVKPLPDYIENALRTAYKRYMTYLDSFGPDEHYLRKKVEMELGTKMIHLKMRCSGLGSEWGKVTLLGTSGLSGSYVE  236 (239)
T ss_pred             CCCCCCCCcHHHHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHHhhhhHHHHhhhhcCCCcccceeeEeecCcCccchhh
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             hcC
Q 026246          239 QRA  241 (241)
Q Consensus       239 qRa  241 (241)
                      |||
T Consensus       237 qRA  239 (239)
T PF14290_consen  237 QRA  239 (239)
T ss_pred             hcC
Confidence            997

>PLN02749 Uncharacterized protein At1g47420

Probab=100.00  E-value=5.9e-113  Score=718.62  Aligned_cols=173  Identities=72%  Similarity=1.149  Sum_probs=172.0

Q ss_pred             ccccccccCCCCCCCCCHHHHHHHHHHHHcccCCCchhHHHHHHhhhcccCCchhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 026246           69 CNRSFSEDVAHMPVIRDPEIQRAFKDLMAADWGELPASVIHDAKSALSRNNDDKAGQEVLKNVFSAAEAVEEFIGIIMNI  148 (241)
Q Consensus        69 ~~R~fS~d~~hlP~i~Dp~i~~afKdLmA~sW~elp~svv~~ak~alSk~tdDkaGqeaL~nvfrAAeAvEeFgGiL~~L  148 (241)
                      ++|+||+|++|||+|+||+|++|||||||+||+|||++|+++||+|||||||||||||||+||||||||||||||+|++|
T Consensus         1 ~~R~fs~d~~~lP~i~Dp~i~~afkdLma~sW~elp~sv~~~~kkalsk~tddkagqeaL~nvfrAAeAveeFgG~L~sL   80 (173)
T PLN02749          1 LRRRFSEDVSHLPEISDPEILKAFKDLMAASWDELPDSVVNDAKKALSKNTDDKAGQEALKNVFRAAEAVEEFGGTLVSL   80 (173)
T ss_pred             CccccccccccCCCCCCHHHHHHHHHHHhcchhhCChHHHHHHHHHHhcCCcchhhHHHHHHHHHHHHHHHHHhhHHHHH
Confidence            58999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             hhhhhhccCCCCCCCcCCchHHHHHHHHHHHHHHHHHhhcCCChhHHHHHHHHhhhhhhhhhhhhhcCCCCCccceEEee
Q 026246          149 KMEFDDEIGLSGENVKPLSNELSSAIRTVYQRYATYLDAFGPDESYLRKKVETELGSKMIFLKMRCAGLGSEWGKVTVLG  228 (241)
Q Consensus       149 rmeiDDl~GlsGEnVkPLP~~~~~Al~tay~rY~~YLdsFgpdE~yLrKKVE~ELGtkmI~LKmRcsGlgseWGKVtlLG  228 (241)
                      |||||||||+||||||||||+++|||+|+||||++|||||||||+|||||||+|||+|||||||||||||||||||||||
T Consensus        81 rmeidDl~GlsGEnv~PLPd~~~~Al~tay~rY~~YLdsFgp~E~yLrKKVE~ELG~kmi~lKmRcsGl~~eWgkvtllG  160 (173)
T PLN02749         81 RMEIDDLIGLSGENVKPLPDYIENALETAYQRYAAYLDSFGPEENYLKKKVEMELGTKMIHLKMRCSGLGSEWGKVTLLG  160 (173)
T ss_pred             HHHHHHhcCCCCCCCCCCcHHHHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHhHHHHHHHhhhcCCCcccceeeEee
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             ccCCCccchhhcC
Q 026246          229 TSGLAGSYVEQRA  241 (241)
Q Consensus       229 TSGLsGSYvEqRa  241 (241)
                      ||||||||||||+
T Consensus       161 TSGlsGSYvEqRa  173 (173)
T PLN02749        161 TSGLSGSYVEQRA  173 (173)
T ss_pred             cCcccchhhhhcC
Confidence            9999999999997

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	241
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	3e-05

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 43.7 bits (102), Expect = 3e-05
 Identities = 36/194 (18%), Positives = 59/194 (30%), Gaps = 67/194 (34%)

Query: 87  EIQRAFKDLMAADWGELPASVIHDAKSALSRNNDDKAGQEVLKNVFSAAEAVEEFIGIIM 146
           E Q  +KD+            +   + A   N D K  Q++ K++ S  E ++     I+
Sbjct: 13  EHQYQYKDI------------LSVFEDAFVDNFDCKDVQDMPKSILSKEE-IDH----II 55

Query: 147 NIKMEFDDEIGL---------SGEN-VKPLSNE--------LSSAIRTVYQ-------RY 181
             K   D   G            E  V+    E        L S I+T  +        Y
Sbjct: 56  MSK---DAVSGTLRLFWTLLSKQEEMVQKFVEEVLRINYKFLMSPIKTEQRQPSMMTRMY 112

Query: 182 ATYLDAFGPDESYL------RKKVETELGSKMIFLK---------MRCAGLGSEWGKVTV 226
               D    D          R +   +L   ++ L+         +    LGS  GK T 
Sbjct: 113 IEQRDRLYNDNQVFAKYNVSRLQPYLKLRQALLELRPAKNVLIDGV----LGS--GK-TW 165

Query: 227 LGTSGLAGSYVEQR 240
           +         V+ +
Sbjct: 166 VALDVCLSYKVQCK 179

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

No hit with probability above 80.00

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

No hit with probability above 80.00