Citrus Sinensis ID: 026264

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-
Protein Sequence
MAAITSVSQLHSSLSSLYPNYRSSPLILAPKTNQDTTICCLTVRSFTFSRRRLSSQSVPRGLIIQNAATKPAKSPAEEDWKTKRELLLQKRVRSVEAKEALRLQKENNFVILDVRPEAEFKEAHPPGAINVQIYRLIKEWTAWDIARRAAFAFFGIFSGTEENPEFLQTGVESQLDKDAKIIVACATGGTMKPSQNLPEGQQSRSLIAAYLLVLNGYKNVYHLEGGLYKWFKEELPEVSEE
Secondary Structure (PSIPRED)
ccccccHHHHcccccccccccccccccccccccccccEEEEccccccccccccccccccccccccccccccccccccccHHHHHHHHHHccccEEcHHHHHHHHHccccEEEEcccHHHHHHccccccccccHHHHHccccHHHHHHHHHHHHHcccccccccHHHHHHHHHHccccccEEEEEEccccccccccccccccccHHHHHHHHHHHcccccEEEccccHHHHHHccccccccc
Secondary Structure Prediction (SSPRO)
ccEEEEEccccccccccccccccccHHccccccccccccccccEEcEEEEEEEEccccccccEEccccccccccccHHHHHHHHHHHHHccccEccHHHHHHHHHHcccEEEEcccHHHHHHccccccEEEEEEEEcccccHHHHHHHHHHHHHcccccccccHHHHHHHHHHcccccccEEEEEccccccccccccccccccHHHHHHHHHHHcccccEEEHccHHHHHHHccccccccc
Coil and Loop (DISEMBL)
MAAITSVSQLHSSLsslypnyrssplilapktnqdtticcltvrsftfsrrrlssqsvprgliiqnaatkpakspaeedWKTKRELLLQKRVRSVEAKEALRLQKennfvildvrpeaefkeahppgaiNVQIYRLIKEWTAWDIARRAAFAFFgifsgteenpefLQTGVESQLDKDAKIIVACAtggtmkpsqnlpegqqSRSLIAAYLLVLNGYKnvyhlegglykwfkeelpevsee
Flexible Loop (DISEMBL)
MAAITSVSQLHSSLSSLYPNYRSSPLIlapktnqdttICCLTVRSFTfsrrrlssqsvprgliiqnaatkpakspaeedwkTKRELLLQKRVRSVEAkealrlqkennfviLDVRpeaefkeahppgaiNVQIYRLIKEWTAWDIARRAAFAFFGIFSGTEENPEFLQTGVESQLDKDAKIIVACATggtmkpsqnlpegqQSRSLIAAYLLVLNGYKNVYHLEGGLYKWFKEELPEVSEE
Low Complexity Region (SEG)
MAAITsvsqlhsslsslYPNYRSSPLILAPKTNQDTTICCltvrsftfsrrrlssQSVPRGLIIQNAATKPAKSPAEEDWKTKRELLLQKRVRSVEAKEALRLQKENNFVILDVRPEAEFKEAHPPGAINVQIYRLIKEWTAWDiarraafaffgifSGTEENPEFLQTGVESQLDKDAKIIVACATGGTMKPSQNLPEGQQSRSLIAAYLLVLNGYKNVYHLEGGLYKWFKEELPEVSEE
Disordered region (IsUnstruct)
************************PLILAPKTNQDTTICCLTVRSFTFSRR***********I************************************ALRLQKENNFVILDVRPEAEFKEAHPPGAINVQIYRLIKEWTAWDIARRAAFAFFGIFSGTEENPEFLQTGVESQLDKDAKIIVACATG****************SLIAAYLLVLNGYKNVYHLEGGLYKWFK*********
Disordered Region (DISOPRED)
*************************************************************************************LLLQKRVRSVEAKEALRLQKENNFVILDVRPEAEFKEAHPPGAINVQIYRLIKEWTAWDIARRAAFAFFGIFSGTEENPEFLQTGVESQLDKDAKIIVACATGGTMKPSQNLPEGQQSRSLIAAYLLVLNGYKNVYHLEGGLYKWFKEELPE****
Disordered Region (DISEMBL)
**************SSLYPNYRSSPLILAPKTNQDTTICCLTVRSFTFSRRRLSSQSVPRGLIIQNA*************KTKRELLLQKRVRSVEAKEALRLQKENNFVILDVRPEAEFKEAHPPGAINVQIYRLIKEWTAWDIARRAAFAFFGIFSGTEENPEFLQTGVESQLDKDAKIIVACATGGTMKPSQNLPEGQQSRSLIAAYLLVLNGYKNVYHLEGGLYKWFKEELPEVSEE
Disordered Region (DISPRO)
**A*TS**QLHSSLSSL******************TTICCLTVRSFTFSRRRLSSQSVPRGLIIQNAATKPAKSPAEEDWKTKRELLLQKRVRSVEAKEALRLQKENNFVILDVRPEAEFKEAHPPGAINVQIYRLIKEWTAWDIARRAAFAFFGIFSGTEENPEFLQTGVESQLDKDAKIIVACATGGTMKPSQNLPEGQQSRSLIAAYLLVLNGYKNVYHLEGGLYKWFKEEL******
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
ooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MAAITSVSQLHSSLSSLYPNYRSSPLILAPKTNQDTTICCLTVRSFTFSRRRLSSQSVPRGLIIQNAATKPAKSPAEEDWKTKRELLLQKRVRSVEAKEALRLQKENNFVILDVRPEAEFKEAHPPGAINVQIYRLIKEWTAWDIARRAAFAFFGIFSGTEENPEFLQTGVESQLDKDAKIIVACATGGTMKPSQNLPEGQQSRSLIAAYLLVLNGYKNVYHLEGGLYKWFKEELPEVSEE
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	241	2.2.26 [Sep-21-2011]
Q94A65	224	Rhodanese-like domain-con	yes	no	0.896	0.964	0.671	5e-81
Q9SR92	214	Rhodanese-like domain-con	no	no	0.560	0.630	0.289	3e-10
O48529	234	Rhodanese-like domain-con	no	no	0.539	0.555	0.275	6e-07
P27626	183	Senescence-associated pro	N/A	no	0.373	0.491	0.317	2e-06
Q39129	120	Thiosulfate sulfurtransfe	no	no	0.377	0.758	0.32	4e-06
Q0WWT7	292	Rhodanese-like domain-con	no	no	0.526	0.434	0.315	7e-06
Q38853	182	Rhodanese-like domain-con	no	no	0.373	0.494	0.293	4e-05
Q59WH7	438	Adenylyltransferase and s	N/A	no	0.373	0.205	0.289	0.0003

>sp|Q94A65|STR14_ARATH Rhodanese-like domain-containing protein 14, chloroplastic OS=Arabidopsis thaliana GN=At4g27700 PE=2 SV=1

 Score =  300 bits (769), Expect = 5e-81,   Method: Compositional matrix adjust.
 Identities = 151/225 (67%), Positives = 178/225 (79%), Gaps = 9/225 (4%)

Query: 12  SSLSSLYPNYRSSPLILAPKTNQDTTICCLTVRSFTFSRRRLSSQSVPRGLIIQNAATKP 71
           +SL+S+   Y SS   L  K++ +T         F+   R  +  S  + L IQ  +TKP
Sbjct: 2   ASLTSIATPYPSSSQALRLKSSGNTL--------FSAGVRSAAMVSGHKTLKIQCTSTKP 53

Query: 72  AKSPAEEDWKTKRELLLQKRVRSVEAKEALRLQKENNFVILDVRPEAEFKEAHPPGAINV 131
           AK  AE DW+ KRELLL+KRVRSV+ KEA RLQKENNFVILDVRPEAE+K  HPPGAINV
Sbjct: 54  AKPAAEVDWRQKRELLLEKRVRSVDVKEAQRLQKENNFVILDVRPEAEYKAGHPPGAINV 113

Query: 132 QIYRLIKEWTAWDIARRAAFAFFGIFSGTEENPEFLQTGVESQLDKDAKIIVACATGGTM 191
           ++YRLI+EWTAWDIARR  FAFFGIFSGTEENPEF+Q+ VE++LDK+AKIIVAC++ GTM
Sbjct: 114 EMYRLIREWTAWDIARRLGFAFFGIFSGTEENPEFIQS-VEAKLDKEAKIIVACSSAGTM 172

Query: 192 KPSQNLPEGQQSRSLIAAYLLVLNGYKNVYHLEGGLYKWFKEELP 236
           KP+QNLPEGQQSRSLIAAYLLVLNGYKNV+HLEGG+Y W KE LP
Sbjct: 173 KPTQNLPEGQQSRSLIAAYLLVLNGYKNVFHLEGGIYTWGKEGLP 217

Arabidopsis thaliana (taxid: 3702)

>sp|Q9SR92|STR10_ARATH Rhodanese-like domain-containing protein 10 OS=Arabidopsis thaliana GN=STR10 PE=2 SV=1

 Score = 65.5 bits (158), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 49/169 (28%), Positives = 83/169 (49%), Gaps = 34/169 (20%)

Query: 82  TKRELLLQKRVRSVEAKEALRLQKENNFVILDVRPEAEFKEAHPPGAINVQIY------- 134
           + +EL+L  +VR+VE KEA  +     +++LDVRP  E ++A   G+++V ++       
Sbjct: 35  SGKELILSGKVRAVEPKEANAVVASEGYILLDVRPAWEREKARVKGSLHVPLFVEDPDNG 94

Query: 135 --RLIKEWTAWDIARRAAFAFFGIFSG---TEENPEFLQTGVESQLDKDAKIIVACATGG 189
              L+K+W            + G+++G   T  N EF    VE+  DK++K++V C    
Sbjct: 95  PITLLKKWI--------HLGYIGLWTGQRFTMINDEFALRVVEAVPDKESKVLVVC---- 142

Query: 190 TMKPSQNLPEGQQSRSLIAAYLLVLNGYKNVYHLEGGLYKWFKEELPEV 238
                     G+  RSL A   L   GYK++  L GG  +  + + PE+
Sbjct: 143 ----------GEGLRSLAAVSKLHGEGYKSLGWLTGGFNRVSEGDFPEI 181

Arabidopsis thaliana (taxid: 3702)

>sp|O48529|STR9_ARATH Rhodanese-like domain-containing protein 9, chloroplastic OS=Arabidopsis thaliana GN=STR9 PE=2 SV=1

 Score = 54.7 bits (130), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 41/149 (27%), Positives = 74/149 (49%), Gaps = 19/149 (12%)

Query: 83  KRELLLQKRVRSVEAKEALRLQKENNFVILDVRPEAEFKEAHPPGAINVQIYRLIKEWTA 142
           +R L +   ++ V A+EA +L  E  + ++DVR + +F+ AH     ++ ++   ++   
Sbjct: 40  RRSLRIAAELKFVNAEEAKQLIAEEGYSVVDVRDKTQFERAHIKSCSHIPLFIYNEDNDI 99

Query: 143 WDIARRAAF-AFFGIFSG---TEENPEFLQTGVESQLDKDAKIIVACATGGTMKPSQNLP 198
             I +R     F G+F G   T+ NPEFL++ V ++  +D+K+++ C  G          
Sbjct: 100 GTIIKRTVHNNFSGLFFGLPFTKVNPEFLKS-VRNEFSQDSKLLLVCQEG---------- 148

Query: 199 EGQQSRSLIAAYLLVLNGYKNVYHLEGGL 227
                RS  AA  L   GY+N+  +  GL
Sbjct: 149 ----LRSAAAASRLEEAGYENIACVTSGL 173

Arabidopsis thaliana (taxid: 3702)

>sp|P27626|DIN1_RAPSA Senescence-associated protein DIN1 OS=Raphanus sativus GN=DIN1 PE=2 SV=1

 Score = 53.1 bits (126), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 40/126 (31%), Positives = 53/126 (42%), Gaps = 36/126 (28%)

Query: 112 LDVRPEAEFKEAHPPGAINV-QIYRLIKEWTAWDIARRAAFAFFGIFSGTEENPEFLQTG 170
           LDVR   EF   HP  AINV  +YR                    + SG  +NP FL+  
Sbjct: 90  LDVRTPDEFSIGHPSRAINVPYMYR--------------------VGSGMVKNPSFLRQ- 128

Query: 171 VESQLDKDAKIIVACATGGTMKPSQNLPEGQQSRSLIAAYLLVLNGYKNVYHLEGGLYKW 230
           V S   K  +II+ C +G               RSL+A+  L+  G+  V  + GG   W
Sbjct: 129 VSSHFRKHDEIIIGCESG--------------ERSLMASTELLTAGFTGVTDIAGGYVPW 174

Query: 231 FKEELP 236
            + ELP
Sbjct: 175 TENELP 180

Is thought to act during the early stages of leaf senescence.

Raphanus sativus (taxid: 3726)

>sp|Q39129|STR16_ARATH Thiosulfate sulfurtransferase 16, chloroplastic OS=Arabidopsis thaliana GN=STR16 PE=1 SV=2

 Score = 52.0 bits (123), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 40/125 (32%), Positives = 50/125 (40%), Gaps = 34/125 (27%)

Query: 112 LDVRPEAEFKEAHPPGAINVQIYRLIKEWTAWDIARRAAFAFFGIFSGTEENPEFLQTGV 171
           LDVR   EF + H  GAINV                R A       SG  +NP+FL+  V
Sbjct: 27  LDVRTPEEFSQGHACGAINVPYM------------NRGA-------SGMSKNPDFLEQ-V 66

Query: 172 ESQLDKDAKIIVACATGGTMKPSQNLPEGQQSRSLIAAYLLVLNGYKNVYHLEGGLYKWF 231
            S   +   IIV C +GG              RS+ A   L+  G+  V  + GG   W 
Sbjct: 67  SSHFGQSDNIIVGCQSGG--------------RSIKATTDLLHAGFTGVKDIVGGYSAWA 112

Query: 232 KEELP 236
           K  LP
Sbjct: 113 KNGLP 117

Thought to act during the early stages of leaf senescence. Catalyzes the transfer of a sulfur ion from a donor to cyanide or to other thiol compounds. Substrate preference is thiosulfate > 3-mercaptopyruvate.

Arabidopsis thaliana (taxid: 3702)

EC: 2

EC: .

EC: 8

EC: .

EC: 1

EC: .

EC: 1

>sp|Q0WWT7|STR11_ARATH Rhodanese-like domain-containing protein 11, chloroplastic OS=Arabidopsis thaliana GN=STR11 PE=2 SV=1

 Score = 51.2 bits (121), Expect = 7e-06,   Method: Compositional matrix adjust.
 Identities = 46/146 (31%), Positives = 72/146 (49%), Gaps = 19/146 (13%)

Query: 86  LLLQKRVRSVEAKEALRLQKENNFVILDVRPEAEFKEAHPPGAINVQIYRLIKEWTAWDI 145
           LL + +V+ +  +EA      +N  +LDVRP +E  +A   G+  V I+       A  +
Sbjct: 82  LLREGKVKLLTPREAGYAISLSNKPLLDVRPSSERNKAWIKGSTWVPIFDNDDNLDAGTL 141

Query: 146 ARRA-AFAFFGIFSGTEE---NPEFLQTGVESQLDKDAKIIVACATGGTMKPSQNLPEGQ 201
           +++  +FA  G +SG      N  FL   VE +  KD+++IVAC  G             
Sbjct: 142 SKKVTSFAMGGWWSGAPTLSFNRLFLSK-VEEKFPKDSELIVACQKG------------- 187

Query: 202 QSRSLIAAYLLVLNGYKNVYHLEGGL 227
             RSL A  LL   GY+N++ ++GGL
Sbjct: 188 -LRSLAACELLYNAGYENLFWVQGGL 212

Arabidopsis thaliana (taxid: 3702)

>sp|Q38853|STR15_ARATH Rhodanese-like domain-containing protein 15, chloroplastic OS=Arabidopsis thaliana GN=STR15 PE=2 SV=1

 Score = 48.5 bits (114), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 37/126 (29%), Positives = 51/126 (40%), Gaps = 36/126 (28%)

Query: 112 LDVRPEAEFKEAHPPGAINV-QIYRLIKEWTAWDIARRAAFAFFGIFSGTEENPEFLQTG 170
           LDVR   EF   HP  AINV  +YR                    + SG  +NP FL+  
Sbjct: 89  LDVRTPDEFSIGHPTRAINVPYMYR--------------------VGSGMVKNPSFLRQ- 127

Query: 171 VESQLDKDAKIIVACATGGTMKPSQNLPEGQQSRSLIAAYLLVLNGYKNVYHLEGGLYKW 230
           V S   K  +II+ C +G                S +A+  L+  G+  +  + GG   W
Sbjct: 128 VSSHFRKHDEIIIGCESG--------------QMSFMASTDLLTAGFTAITDIAGGYVAW 173

Query: 231 FKEELP 236
            + ELP
Sbjct: 174 TENELP 179

Arabidopsis thaliana (taxid: 3702)

>sp|Q59WH7|UBA4_CANAL Adenylyltransferase and sulfurtransferase UBA4 OS=Candida albicans (strain SC5314 / ATCC MYA-2876) GN=UBA4 PE=3 SV=1

 Score = 45.8 bits (107), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 37/128 (28%), Positives = 52/128 (40%), Gaps = 38/128 (29%)

Query: 103 LQKENNFVILDVRPEAEFKEAHPPGAINVQIYRLIKEWTAWDIARRAAFAFFGIFSGTEE 162
           +Q +   +++DVRP  +F+  H P AINVQ          WD   R A A          
Sbjct: 338 VQNKKKHILIDVRPREQFQITHLPNAINVQ----------WDPTFRKADA---------- 377

Query: 163 NPEFLQTGVESQLDKDAKIIVACATGGTMKPSQNLPEGQQSRSLIAAYLLVLNGYKNVYH 222
               ++  +     KD +I V C  G              + S +AA  L+  GY NV  
Sbjct: 378 ----IEQYLPDDSTKDDEIYVVCRFG--------------NDSQLAAKKLIGMGYPNVRD 419

Query: 223 LEGGLYKW 230
           + GGL KW
Sbjct: 420 IIGGLDKW 427

Plays a central role in 2-thiolation of mcm(5)S(2)U at tRNA wobble positions of tRNA(Lys), tRNA(Glu) and tRNA(Gln). Acts by mediating the C-terminal thiocarboxylation of sulfur carrier URM1. Its N-terminus first activates URM1 as acyl-adenylates (-COAMP), then the persulfide sulfur on the catalytic cysteine is transferred to URM1 to form thiocarboxylation (-COSH) of its C-terminus. The reaction probably involves hydrogen sulfide that is generated from the persulfide intermediate and that acts as nucleophile towards URM1. Subsequently, a transient disulfide bond is formed. Does not use thiosulfate as sulfur donor; NFS1 probably acting as a sulfur donor for thiocarboxylation reactions. Prior mcm(5) tRNA modification by the elongator complex is required for 2-thiolation. May also be involved in protein urmylation.

Candida albicans (strain SC5314 / ATCC MYA-2876) (taxid: 237561)

EC: 2

EC: .

EC: 8

EC: .

EC: 1

EC: .

EC: -

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	241
449457001	237	PREDICTED: rhodanese-like domain-contain	0.983	1.0	0.767	1e-100
224135067	239	predicted protein [Populus trichocarpa]	0.925	0.933	0.816	1e-93
356552743	235	PREDICTED: uncharacterized protein LOC10	0.950	0.974	0.745	5e-92
224118370	239	predicted protein [Populus trichocarpa]	0.929	0.937	0.795	6e-92
357464053	232	Senescence-associated protein DIN1 [Medi	0.958	0.995	0.702	6e-90
217071574	232	unknown [Medicago truncatula]	0.958	0.995	0.698	2e-89
225455288	233	PREDICTED: uncharacterized protein LOC10	0.966	1.0	0.746	2e-88
255588548	235	conserved hypothetical protein [Ricinus	0.858	0.880	0.789	1e-87
357464055	248	Senescence-associated protein DIN1 [Medi	0.887	0.862	0.698	7e-87
356509206	234	PREDICTED: uncharacterized protein LOC10	0.970	1.0	0.730	1e-86

>gi|449457001|ref|XP_004146237.1| PREDICTED: rhodanese-like domain-containing protein 14, chloroplastic-like [Cucumis sativus] gi|449515971|ref|XP_004165021.1| PREDICTED: rhodanese-like domain-containing protein 14, chloroplastic-like [Cucumis sativus]

 Score =  371 bits (953), Expect = e-100,   Method: Compositional matrix adjust.
 Identities = 185/241 (76%), Positives = 203/241 (84%), Gaps = 4/241 (1%)

Query: 1   MAAITSVSQLHSSLSSLYPNYRSSPLILAPKTNQDTTICCLTVRSFTFSRRRLSSQSVPR 60
           MAA  S   L  + SSL+P  + SPL+ + K   D +  C TVRS  +  ++ SSQS PR
Sbjct: 1   MAAFAS---LPLTSSSLHPVVQFSPLVFSSKVVYDPSSYCFTVRSIRYGNQKFSSQSNPR 57

Query: 61  GLIIQNAATKPAKSPAEEDWKTKRELLLQKRVRSVEAKEALRLQKENNFVILDVRPEAEF 120
            LII  AATK AK+PAEEDWK KRELLLQKRVRSV+A EALRLQKENNFVILDVRPEAEF
Sbjct: 58  SLIILGAATKQAKTPAEEDWKVKRELLLQKRVRSVDANEALRLQKENNFVILDVRPEAEF 117

Query: 121 KEAHPPGAINVQIYRLIKEWTAWDIARRAAFAFFGIFSGTEENPEFLQTGVESQLDKDAK 180
           KE HPPGAINVQIYRLIKEWTAWDIARRAAFAFFGIFSGTEENPEFLQ+ VES++DKDAK
Sbjct: 118 KEGHPPGAINVQIYRLIKEWTAWDIARRAAFAFFGIFSGTEENPEFLQS-VESKIDKDAK 176

Query: 181 IIVACATGGTMKPSQNLPEGQQSRSLIAAYLLVLNGYKNVYHLEGGLYKWFKEELPEVSE 240
           IIVAC++GGTMKP+QNLPEGQQSRSLIAAYLLVLNGY NV+HLEGGLY WFKE LP VSE
Sbjct: 177 IIVACSSGGTMKPTQNLPEGQQSRSLIAAYLLVLNGYANVFHLEGGLYNWFKEGLPVVSE 236

Query: 241 E 241
           E
Sbjct: 237 E 237

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224135067|ref|XP_002321975.1| predicted protein [Populus trichocarpa] gi|222868971|gb|EEF06102.1| predicted protein [Populus trichocarpa]

 Score =  348 bits (893), Expect = 1e-93,   Method: Compositional matrix adjust.
 Identities = 183/224 (81%), Positives = 200/224 (89%), Gaps = 1/224 (0%)

Query: 17  LYPNYRSSPLILAPKTNQDTTICCLTVRSFTFSRRRLSSQSVPRGLIIQNAATKPAKSPA 76
           LYPNY+SSPLI + KT QD ++   TVRS    R R SS +VPRGL + NAATKPAKSPA
Sbjct: 16  LYPNYQSSPLIFSSKTAQDPSLPFFTVRSNGSLRGRSSSCTVPRGLRVFNAATKPAKSPA 75

Query: 77  EEDWKTKRELLLQKRVRSVEAKEALRLQKENNFVILDVRPEAEFKEAHPPGAINVQIYRL 136
           EEDWKTKRE+LLQK+VRSV+ KEALRLQKENNFVILDVRPEAEFKEAHPPGAINVQ+YRL
Sbjct: 76  EEDWKTKREVLLQKKVRSVDVKEALRLQKENNFVILDVRPEAEFKEAHPPGAINVQVYRL 135

Query: 137 IKEWTAWDIARRAAFAFFGIFSGTEENPEFLQTGVESQLDKDAKIIVACATGGTMKPSQN 196
           IKEWTAWDIARRAAFAFFGIF+GTEENPEF+QT VES++DK AKIIVAC+ GGTM+PSQN
Sbjct: 136 IKEWTAWDIARRAAFAFFGIFAGTEENPEFMQT-VESKIDKSAKIIVACSAGGTMRPSQN 194

Query: 197 LPEGQQSRSLIAAYLLVLNGYKNVYHLEGGLYKWFKEELPEVSE 240
           LPEGQQSRSLIAAYLLVLNGY NV+HLEGGLYKWFKE LP  SE
Sbjct: 195 LPEGQQSRSLIAAYLLVLNGYTNVFHLEGGLYKWFKEGLPAESE 238

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356552743|ref|XP_003544722.1| PREDICTED: uncharacterized protein LOC100792221 [Glycine max]

 Score =  342 bits (878), Expect = 5e-92,   Method: Compositional matrix adjust.
 Identities = 173/232 (74%), Positives = 193/232 (83%), Gaps = 3/232 (1%)

Query: 12  SSLSSLYPNYRSSPLILAPKTNQDTTICCLTVRSFTFSRRRLSSQSVPRGLII--QNAAT 69
           +S SSL  +  SS L  + +   D     +  RS     +RL +Q + RGL I  Q+AAT
Sbjct: 5   ASSSSLQTHLHSSLLAPSFEGAHDHNSWWVRARSQKRIGQRLHTQDIARGLRIKVQSAAT 64

Query: 70  KPAKSPAEEDWKTKRELLLQKRVRSVEAKEALRLQKENNFVILDVRPEAEFKEAHPPGAI 129
           KPAKSPAEEDWK KRE LLQKRVRSVE KEALRLQKEN+FV+LDVRPEAEFKEAHPPGAI
Sbjct: 65  KPAKSPAEEDWKVKREFLLQKRVRSVEVKEALRLQKENSFVLLDVRPEAEFKEAHPPGAI 124

Query: 130 NVQIYRLIKEWTAWDIARRAAFAFFGIFSGTEENPEFLQTGVESQLDKDAKIIVACATGG 189
           NVQIYRLIKEWTAWDIARRAAF FFGIFSGTEENPEF++  VE+++DKDAKIIVAC +GG
Sbjct: 125 NVQIYRLIKEWTAWDIARRAAFLFFGIFSGTEENPEFIKN-VEAKIDKDAKIIVACTSGG 183

Query: 190 TMKPSQNLPEGQQSRSLIAAYLLVLNGYKNVYHLEGGLYKWFKEELPEVSEE 241
           T++PSQNLPEGQQSRSLIAAYLLVLNGY NV+HLEGGLYKWFKEELP VSEE
Sbjct: 184 TLRPSQNLPEGQQSRSLIAAYLLVLNGYTNVFHLEGGLYKWFKEELPTVSEE 235

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224118370|ref|XP_002317802.1| predicted protein [Populus trichocarpa] gi|118489060|gb|ABK96337.1| unknown [Populus trichocarpa x Populus deltoides] gi|222858475|gb|EEE96022.1| predicted protein [Populus trichocarpa]

 Score =  342 bits (878), Expect = 6e-92,   Method: Compositional matrix adjust.
 Identities = 179/225 (79%), Positives = 198/225 (88%), Gaps = 1/225 (0%)

Query: 17  LYPNYRSSPLILAPKTNQDTTICCLTVRSFTFSRRRLSSQSVPRGLIIQNAATKPAKSPA 76
           LYPNY+SSPLI + KT QD      T+RS    R RLSS + PRGL + NAATKPAKSPA
Sbjct: 16  LYPNYQSSPLIFSSKTTQDHCSPFFTIRSNGSLRGRLSSSTFPRGLKVLNAATKPAKSPA 75

Query: 77  EEDWKTKRELLLQKRVRSVEAKEALRLQKENNFVILDVRPEAEFKEAHPPGAINVQIYRL 136
           EEDWKTKRE+LL+ +VRSV+ KEALRLQKEN FVILDVRPEAEFKEAHP GAINVQ+YRL
Sbjct: 76  EEDWKTKREVLLKNKVRSVDVKEALRLQKENKFVILDVRPEAEFKEAHPSGAINVQVYRL 135

Query: 137 IKEWTAWDIARRAAFAFFGIFSGTEENPEFLQTGVESQLDKDAKIIVACATGGTMKPSQN 196
           IKEWTAWDIARRAAFAFFGIF+GTEENPEF+QT VES+++K+AKIIVAC+ GGTMKPSQN
Sbjct: 136 IKEWTAWDIARRAAFAFFGIFAGTEENPEFMQT-VESKINKNAKIIVACSAGGTMKPSQN 194

Query: 197 LPEGQQSRSLIAAYLLVLNGYKNVYHLEGGLYKWFKEELPEVSEE 241
           LPEGQQSRSLIAAYLLVLNGYKNV+HLEGGLY WFKE+LP  SEE
Sbjct: 195 LPEGQQSRSLIAAYLLVLNGYKNVFHLEGGLYTWFKEDLPAESEE 239

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357464053|ref|XP_003602308.1| Senescence-associated protein DIN1 [Medicago truncatula] gi|355491356|gb|AES72559.1| Senescence-associated protein DIN1 [Medicago truncatula] gi|388515773|gb|AFK45948.1| unknown [Medicago truncatula]

 Score =  336 bits (861), Expect = 6e-90,   Method: Compositional matrix adjust.
 Identities = 168/239 (70%), Positives = 196/239 (82%), Gaps = 8/239 (3%)

Query: 3   AITSVSQLHSSLSSLYPNYRSSPLILAPKTNQDTTICCLTVRSFTFSRRRLSSQSVPRGL 62
           A TS +  + S S L        L+ + +  +D    C+ VRS+  + ++ S  +  RG+
Sbjct: 2   AFTSTALQYPSTSYL------QSLVPSLEGTRDQNSWCVRVRSYKPTSQK-SQLNFARGI 54

Query: 63  IIQNAATKPAKSPAEEDWKTKRELLLQKRVRSVEAKEALRLQKENNFVILDVRPEAEFKE 122
            +Q+AATKPAKSPAEE+WK KRELLLQKRV+SVE KEALRLQKENNFVILDVRPEAEFKE
Sbjct: 55  TVQSAATKPAKSPAEEEWKVKRELLLQKRVKSVEPKEALRLQKENNFVILDVRPEAEFKE 114

Query: 123 AHPPGAINVQIYRLIKEWTAWDIARRAAFAFFGIFSGTEENPEFLQTGVESQLDKDAKII 182
            HPP AINVQ+YRLIKEWTAWDIARRAAFAFFGIFSGTEENPEF+++ V  QLDK+AKII
Sbjct: 115 GHPPDAINVQVYRLIKEWTAWDIARRAAFAFFGIFSGTEENPEFIKS-VGEQLDKNAKII 173

Query: 183 VACATGGTMKPSQNLPEGQQSRSLIAAYLLVLNGYKNVYHLEGGLYKWFKEELPEVSEE 241
           VAC+ GGTMKP+QNLP+GQQSRSLIAAYLLVLNGY NV+HLEGGLYKWFKE+LP V+EE
Sbjct: 174 VACSAGGTMKPTQNLPQGQQSRSLIAAYLLVLNGYNNVFHLEGGLYKWFKEDLPAVAEE 232

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|217071574|gb|ACJ84147.1| unknown [Medicago truncatula]

 Score =  334 bits (856), Expect = 2e-89,   Method: Compositional matrix adjust.
 Identities = 167/239 (69%), Positives = 196/239 (82%), Gaps = 8/239 (3%)

Query: 3   AITSVSQLHSSLSSLYPNYRSSPLILAPKTNQDTTICCLTVRSFTFSRRRLSSQSVPRGL 62
           A TS +  + S S L        L+ + +  +D    C+ VRS+  + ++ S  +  RG+
Sbjct: 2   AFTSTALQYPSTSYL------QSLVPSLEGTRDQNSWCVRVRSYKPTSQK-SQLNFARGI 54

Query: 63  IIQNAATKPAKSPAEEDWKTKRELLLQKRVRSVEAKEALRLQKENNFVILDVRPEAEFKE 122
            +Q+AATKPAKSPAEE+WK KRELLLQKRV+SVE KEALRLQKENNFVILDVRPEAEFKE
Sbjct: 55  TVQSAATKPAKSPAEEEWKVKRELLLQKRVKSVEPKEALRLQKENNFVILDVRPEAEFKE 114

Query: 123 AHPPGAINVQIYRLIKEWTAWDIARRAAFAFFGIFSGTEENPEFLQTGVESQLDKDAKII 182
            HPP AINVQ+YRLIKEWTAWDIARRAAFAFFGIFSGTEENPEF+++ V  QLDK+AKII
Sbjct: 115 GHPPDAINVQVYRLIKEWTAWDIARRAAFAFFGIFSGTEENPEFIKS-VGEQLDKNAKII 173

Query: 183 VACATGGTMKPSQNLPEGQQSRSLIAAYLLVLNGYKNVYHLEGGLYKWFKEELPEVSEE 241
           VAC+ GGTMKP+QNLP+GQQSRSLIAAYLLVLNGY +V+HLEGGLYKWFKE+LP V+EE
Sbjct: 174 VACSAGGTMKPTQNLPQGQQSRSLIAAYLLVLNGYNHVFHLEGGLYKWFKEDLPAVAEE 232

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225455288|ref|XP_002274646.1| PREDICTED: uncharacterized protein LOC100245212 [Vitis vinifera] gi|302143949|emb|CBI23054.3| unnamed protein product [Vitis vinifera]

 Score =  331 bits (848), Expect = 2e-88,   Method: Compositional matrix adjust.
 Identities = 180/241 (74%), Positives = 204/241 (84%), Gaps = 8/241 (3%)

Query: 1   MAAITSVSQLHSSLSSLYPNYRSSPLILAPKTNQDTTICCLTVRSFTFSRRRLSSQSVPR 60
           MAA+ S++  HSS SSL+P        L+  T+  +       RS   +R+RL S+S  R
Sbjct: 1   MAALASITP-HSS-SSLHPKSH-----LSSNTSHHSISSYCVTRSVRTNRQRLYSESGSR 53

Query: 61  GLIIQNAATKPAKSPAEEDWKTKRELLLQKRVRSVEAKEALRLQKENNFVILDVRPEAEF 120
           GL IQ+AATKPAKSPAEEDWK KRE+LL+K+VRSV+AKEALRLQ+ENNFVILDVRPEAEF
Sbjct: 54  GLKIQSAATKPAKSPAEEDWKIKREVLLEKKVRSVDAKEALRLQQENNFVILDVRPEAEF 113

Query: 121 KEAHPPGAINVQIYRLIKEWTAWDIARRAAFAFFGIFSGTEENPEFLQTGVESQLDKDAK 180
           KEAHPPGAINVQIYRLIKEWTAWDIARRAAFAFFGIF+GTEENPEF+Q+ VES++DK AK
Sbjct: 114 KEAHPPGAINVQIYRLIKEWTAWDIARRAAFAFFGIFAGTEENPEFMQS-VESKIDKSAK 172

Query: 181 IIVACATGGTMKPSQNLPEGQQSRSLIAAYLLVLNGYKNVYHLEGGLYKWFKEELPEVSE 240
           IIVAC++GGTMKPSQNLPEGQQSRSLIAAYLLVLNGY NV+HLEGGLY WFKE LP VSE
Sbjct: 173 IIVACSSGGTMKPSQNLPEGQQSRSLIAAYLLVLNGYTNVFHLEGGLYTWFKEGLPSVSE 232

Query: 241 E 241
           E
Sbjct: 233 E 233

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255588548|ref|XP_002534640.1| conserved hypothetical protein [Ricinus communis] gi|223524858|gb|EEF27743.1| conserved hypothetical protein [Ricinus communis]

 Score =  328 bits (841), Expect = 1e-87,   Method: Compositional matrix adjust.
 Identities = 165/209 (78%), Positives = 182/209 (87%), Gaps = 2/209 (0%)

Query: 34  QDTTICCLTVRSFTFSRRRLSSQSVPRGLIIQN-AATKPAKSPAEEDWKTKRELLLQKRV 92
           QD  +   T R+    + RLSSQ V R  +  + AATKPAKSPAEE+WK KRE LLQK+V
Sbjct: 28  QDLNLSFFTTRTNGSLKGRLSSQKVSRSSLRVSSAATKPAKSPAEEEWKVKRETLLQKKV 87

Query: 93  RSVEAKEALRLQKENNFVILDVRPEAEFKEAHPPGAINVQIYRLIKEWTAWDIARRAAFA 152
           RSV+ KEALRLQ+ENNFVILDVRPEAEFKEAHPPGAINVQIYRLIKEWTAWDIARRAAFA
Sbjct: 88  RSVDVKEALRLQQENNFVILDVRPEAEFKEAHPPGAINVQIYRLIKEWTAWDIARRAAFA 147

Query: 153 FFGIFSGTEENPEFLQTGVESQLDKDAKIIVACATGGTMKPSQNLPEGQQSRSLIAAYLL 212
           FFGIFSGTEENPEFLQ  V+S++DK+AKIIVAC++GGTMKPSQNLPEGQQSRSLIAAYLL
Sbjct: 148 FFGIFSGTEENPEFLQI-VDSKIDKNAKIIVACSSGGTMKPSQNLPEGQQSRSLIAAYLL 206

Query: 213 VLNGYKNVYHLEGGLYKWFKEELPEVSEE 241
           VLNGY NV++LEGGLY WFKE LP VSEE
Sbjct: 207 VLNGYTNVFYLEGGLYTWFKEGLPSVSEE 235

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357464055|ref|XP_003602309.1| Senescence-associated protein DIN1 [Medicago truncatula] gi|355491357|gb|AES72560.1| Senescence-associated protein DIN1 [Medicago truncatula]

 Score =  325 bits (834), Expect = 7e-87,   Method: Compositional matrix adjust.
 Identities = 162/232 (69%), Positives = 188/232 (81%), Gaps = 18/232 (7%)

Query: 26  LILAPKTNQDTTICCLTVRSFTFSRRRLSSQSVPRGLIIQNAATKPAKSPAEEDWKTKRE 85
           L+ + +  +D    C+ VRS+  + ++ S  +  RG+ +Q+AATKPAKSPAEE+WK KRE
Sbjct: 19  LVPSLEGTRDQNSWCVRVRSYKPTSQK-SQLNFARGITVQSAATKPAKSPAEEEWKVKRE 77

Query: 86  LLLQKRVR----------------SVEAKEALRLQKENNFVILDVRPEAEFKEAHPPGAI 129
           LLLQKRV+                SVE KEALRLQKENNFVILDVRPEAEFKE HPP AI
Sbjct: 78  LLLQKRVKLYLSIICAPHTLLNVKSVEPKEALRLQKENNFVILDVRPEAEFKEGHPPDAI 137

Query: 130 NVQIYRLIKEWTAWDIARRAAFAFFGIFSGTEENPEFLQTGVESQLDKDAKIIVACATGG 189
           NVQ+YRLIKEWTAWDIARRAAFAFFGIFSGTEENPEF+++ V  QLDK+AKIIVAC+ GG
Sbjct: 138 NVQVYRLIKEWTAWDIARRAAFAFFGIFSGTEENPEFIKS-VGEQLDKNAKIIVACSAGG 196

Query: 190 TMKPSQNLPEGQQSRSLIAAYLLVLNGYKNVYHLEGGLYKWFKEELPEVSEE 241
           TMKP+QNLP+GQQSRSLIAAYLLVLNGY NV+HLEGGLYKWFKE+LP V+EE
Sbjct: 197 TMKPTQNLPQGQQSRSLIAAYLLVLNGYNNVFHLEGGLYKWFKEDLPAVAEE 248

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356509206|ref|XP_003523342.1| PREDICTED: uncharacterized protein LOC100797443 [Glycine max]

 Score =  325 bits (833), Expect = 1e-86,   Method: Compositional matrix adjust.
 Identities = 176/241 (73%), Positives = 199/241 (82%), Gaps = 7/241 (2%)

Query: 1   MAAITSVSQLHSSLSSLYPNYRSSPLILAPKTNQDTTICCLTVRSFTFSRRRLSSQSVPR 60
           MAA TS+   +SS SSL        L+ + +  +D       VRS+  + +    Q++ R
Sbjct: 1   MAAFTSIVVQYSSTSSL------QSLVPSLEATRDHNSWWGRVRSYRSTGKNSLQQNITR 54

Query: 61  GLIIQNAATKPAKSPAEEDWKTKRELLLQKRVRSVEAKEALRLQKENNFVILDVRPEAEF 120
           GL IQNAATKPAKSPAEEDWK KRE LL+KRVRSV+AKEA RLQKENNFVILDVRPEAEF
Sbjct: 55  GLTIQNAATKPAKSPAEEDWKVKREYLLEKRVRSVDAKEAFRLQKENNFVILDVRPEAEF 114

Query: 121 KEAHPPGAINVQIYRLIKEWTAWDIARRAAFAFFGIFSGTEENPEFLQTGVESQLDKDAK 180
           KEAHPP AINVQIYRLIKEWTAWDIARRAAFAFFGIF+GTEENPEF+Q+ VE++LDK+AK
Sbjct: 115 KEAHPPDAINVQIYRLIKEWTAWDIARRAAFAFFGIFAGTEENPEFIQS-VEAKLDKNAK 173

Query: 181 IIVACATGGTMKPSQNLPEGQQSRSLIAAYLLVLNGYKNVYHLEGGLYKWFKEELPEVSE 240
           IIVAC+ GGTMKPSQNLPEGQQSRSLIAAYLLVL+GY NV+HLEGGLY WFKE+LP VSE
Sbjct: 174 IIVACSAGGTMKPSQNLPEGQQSRSLIAAYLLVLDGYTNVFHLEGGLYSWFKEDLPSVSE 233

Query: 241 E 241
           E
Sbjct: 234 E 234

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	241
TAIR|locus:2137792	224	AT4G27700 "AT4G27700" [Arabido	0.742	0.799	0.723	1.5e-65
UNIPROTKB|Q3AEL0	126	CHY_0566 "Rhodanese-like domai	0.190	0.365	0.412	5.1e-09
TIGR_CMR|CHY_0566	126	CHY_0566 "rhodanese-like domai	0.190	0.365	0.412	5.1e-09
UNIPROTKB|Q74F14	102	GSU0795 "Rhodanese homology do	0.178	0.421	0.340	1.9e-07
TIGR_CMR|GSU_0795	102	GSU_0795 "rhodanese-like domai	0.178	0.421	0.340	1.9e-07
TAIR|locus:2097628	214	AT3G08920 "AT3G08920" [Arabido	0.564	0.635	0.286	3.3e-07
UNIPROTKB|Q3Z6P8	144	DET1392 "Sulfurtransferase" [D	0.178	0.298	0.382	2e-06
TIGR_CMR|DET_1392	144	DET_1392 "rhodanese-like domai	0.178	0.298	0.382	2e-06
TIGR_CMR|CPS_3148	133	CPS_3148 "putative phage shock	0.165	0.300	0.357	4.3e-05
TAIR|locus:2156937	120	STR16 "AT5G66040" [Arabidopsis	0.265	0.533	0.329	0.00011

TAIR|locus:2137792 AT4G27700 "AT4G27700" [Arabidopsis thaliana (taxid:3702)]

 Score = 667 (239.9 bits), Expect = 1.5e-65, P = 1.5e-65
 Identities = 131/181 (72%), Positives = 149/181 (82%)

Query:    62 LIIQNAATKPAKSPAEEDWKTKRELLLQKRVRSVEAKEALRLQKENNFVILDVRPEAEFK 121
             L IQ  +TKPAK  AE DW+ KRELLL+KRVRSV+ KEA RLQKENNFVILDVRPEAE+K
Sbjct:    44 LKIQCTSTKPAKPAAEVDWRQKRELLLEKRVRSVDVKEAQRLQKENNFVILDVRPEAEYK 103

Query:   122 EAHPPGAINVQIYRLIKEWTAWDXXXXXXXXXXXXXSGTEENPEFLQTGVESQLDKDAKI 181
               HPPGAINV++YRLI+EWTAWD             SGTEENPEF+Q+ VE++LDK+AKI
Sbjct:   104 AGHPPGAINVEMYRLIREWTAWDIARRLGFAFFGIFSGTEENPEFIQS-VEAKLDKEAKI 162

Query:   182 IVACATGGTMKPSQNLPEGQQSRSLIAAYLLVLNGYKNVYHLEGGLYKWFKEELP-EVSE 240
             IVAC++ GTMKP+QNLPEGQQSRSLIAAYLLVLNGYKNV+HLEGG+Y W KE LP E  E
Sbjct:   163 IVACSSAGTMKPTQNLPEGQQSRSLIAAYLLVLNGYKNVFHLEGGIYTWGKEGLPVETIE 222

Query:   241 E 241
             E
Sbjct:   223 E 223

GO:0003674 "molecular_function" evidence=ND

GO:0007568 "aging" evidence=ISS

GO:0009507 "chloroplast" evidence=ISM;IDA

GO:0009535 "chloroplast thylakoid membrane" evidence=IDA

GO:0009534 "chloroplast thylakoid" evidence=IDA

GO:0009941 "chloroplast envelope" evidence=IDA

GO:0000023 "maltose metabolic process" evidence=RCA

GO:0006098 "pentose-phosphate shunt" evidence=RCA

GO:0019252 "starch biosynthetic process" evidence=RCA

GO:0043085 "positive regulation of catalytic activity" evidence=RCA

UNIPROTKB|Q3AEL0 CHY_0566 "Rhodanese-like domain protein" [Carboxydothermus hydrogenoformans Z-2901 (taxid:246194)]

 Score = 91 (37.1 bits), Expect = 5.1e-09, Sum P(2) = 5.1e-09
 Identities = 26/63 (41%), Positives = 34/63 (53%)

Query:   171 VESQL---DKDAKIIVACATGGTMKPSQNLPEGQQSRSLIAAYLLVLNGYKNVYHLEGGL 227
             VE QL   DK+ +I+V C TG              SRS   A +LV  GYK+VY+L+GG+
Sbjct:    72 VEQQLPNIDKEQEILVVCETG--------------SRSASIAQMLVSKGYKHVYNLKGGI 117

Query:   228 YKW 230
               W
Sbjct:   118 ANW 120

GO:0003674 "molecular_function" evidence=ND

GO:0008150 "biological_process" evidence=ND

TIGR_CMR|CHY_0566 CHY_0566 "rhodanese-like domain protein" [Carboxydothermus hydrogenoformans Z-2901 (taxid:246194)]

 Score = 91 (37.1 bits), Expect = 5.1e-09, Sum P(2) = 5.1e-09
 Identities = 26/63 (41%), Positives = 34/63 (53%)

Query:   171 VESQL---DKDAKIIVACATGGTMKPSQNLPEGQQSRSLIAAYLLVLNGYKNVYHLEGGL 227
             VE QL   DK+ +I+V C TG              SRS   A +LV  GYK+VY+L+GG+
Sbjct:    72 VEQQLPNIDKEQEILVVCETG--------------SRSASIAQMLVSKGYKHVYNLKGGI 117

Query:   228 YKW 230
               W
Sbjct:   118 ANW 120

GO:0003674 "molecular_function" evidence=ND

GO:0008150 "biological_process" evidence=ND

UNIPROTKB|Q74F14 GSU0795 "Rhodanese homology domain superfamily protein" [Geobacter sulfurreducens PCA (taxid:243231)]

 Score = 77 (32.2 bits), Expect = 1.9e-07, Sum P(2) = 1.9e-07
 Identities = 15/44 (34%), Positives = 27/44 (61%)

Query:    95 VEAKEALRLQKENNF-VILDVRPEAEFKEAHPPGAINVQIYRLI 137
             + + E L+ +K NN   ++DVR   EFK  H PGA++   ++++
Sbjct:     1 MRSNELLKRRKANNPPTVIDVRTGFEFKAGHVPGAVHAPAWKIL 44

GO:0003674 "molecular_function" evidence=ND

GO:0008150 "biological_process" evidence=ND

TIGR_CMR|GSU_0795 GSU_0795 "rhodanese-like domain protein" [Geobacter sulfurreducens PCA (taxid:243231)]

 Score = 77 (32.2 bits), Expect = 1.9e-07, Sum P(2) = 1.9e-07
 Identities = 15/44 (34%), Positives = 27/44 (61%)

Query:    95 VEAKEALRLQKENNF-VILDVRPEAEFKEAHPPGAINVQIYRLI 137
             + + E L+ +K NN   ++DVR   EFK  H PGA++   ++++
Sbjct:     1 MRSNELLKRRKANNPPTVIDVRTGFEFKAGHVPGAVHAPAWKIL 44

GO:0003674 "molecular_function" evidence=ND

GO:0008150 "biological_process" evidence=ND

TAIR|locus:2097628 AT3G08920 "AT3G08920" [Arabidopsis thaliana (taxid:3702)]

 Score = 130 (50.8 bits), Expect = 3.3e-07, P = 3.3e-07
 Identities = 47/164 (28%), Positives = 76/164 (46%)

Query:    84 RELLLQKRVRSVEAKEALRLQKENNFVILDVRPEAEFKEAHPPGAINVQIY--------- 134
             +EL+L  +VR+VE KEA  +     +++LDVRP  E ++A   G+++V ++         
Sbjct:    37 KELILSGKVRAVEPKEANAVVASEGYILLDVRPAWEREKARVKGSLHVPLFVEDPDNGPI 96

Query:   135 RLIKEWTAWDXXXXXXXXXXXXXSGTEENPEFLQTGVESQLDKDAKIIVACATGGTMKPS 194
              L+K+W                   T  N EF    VE+  DK++K++V C         
Sbjct:    97 TLLKKWIHLGYIGLWTGQRF-----TMINDEFALRVVEAVPDKESKVLVVC--------- 142

Query:   195 QNLPEGQQSRSLIAAYLLVLNGYKNVYHLEGGLYKWFKEELPEV 238
                  G+  RSL A   L   GYK++  L GG  +  + + PE+
Sbjct:   143 -----GEGLRSLAAVSKLHGEGYKSLGWLTGGFNRVSEGDFPEI 181

GO:0003674 "molecular_function" evidence=ND

GO:0008150 "biological_process" evidence=ND

GO:0009507 "chloroplast" evidence=ISM;IDA

GO:0009534 "chloroplast thylakoid" evidence=IDA

GO:0009941 "chloroplast envelope" evidence=IDA

UNIPROTKB|Q3Z6P8 DET1392 "Sulfurtransferase" [Dehalococcoides ethenogenes 195 (taxid:243164)]

 Score = 84 (34.6 bits), Expect = 2.0e-06, Sum P(2) = 2.0e-06
 Identities = 18/47 (38%), Positives = 28/47 (59%)

Query:    92 VRSVEAKEALRLQKEN----NFVILDVRPEAEFKEAHPPGAINVQIY 134
             V+++   EA  L   N    +F+ILDVR  +E+ + H PGA+N+  Y
Sbjct:    38 VQNISVAEAKALIDRNAVSADFIILDVRTPSEYAQGHIPGAVNLDYY 84

GO:0003674 "molecular_function" evidence=ND

GO:0008150 "biological_process" evidence=ND

TIGR_CMR|DET_1392 DET_1392 "rhodanese-like domain protein" [Dehalococcoides ethenogenes 195 (taxid:243164)]

 Score = 84 (34.6 bits), Expect = 2.0e-06, Sum P(2) = 2.0e-06
 Identities = 18/47 (38%), Positives = 28/47 (59%)

Query:    92 VRSVEAKEALRLQKEN----NFVILDVRPEAEFKEAHPPGAINVQIY 134
             V+++   EA  L   N    +F+ILDVR  +E+ + H PGA+N+  Y
Sbjct:    38 VQNISVAEAKALIDRNAVSADFIILDVRTPSEYAQGHIPGAVNLDYY 84

GO:0003674 "molecular_function" evidence=ND

GO:0008150 "biological_process" evidence=ND

TIGR_CMR|CPS_3148 CPS_3148 "putative phage shock protein E" [Colwellia psychrerythraea 34H (taxid:167879)]

 Score = 79 (32.9 bits), Expect = 4.3e-05, Sum P(2) = 4.3e-05
 Identities = 15/42 (35%), Positives = 26/42 (61%)

Query:    90 KRVRSVEAKEALRLQKENNFVILDVRPEAEFKEAHPPGAINV 131
             K +   E ++ ++  K+   ++LDVR E EF+E H P A+N+
Sbjct:    28 KDISQTELQQIMKNDKQ--VILLDVRTEEEFEEGHIPNAVNI 67

GO:0009271 "phage shock" evidence=ISS

GO:0016740 "transferase activity" evidence=ISS

TAIR|locus:2156937 STR16 "AT5G66040" [Arabidopsis thaliana (taxid:3702)]

 Score = 77 (32.2 bits), Expect = 0.00011, Sum P(2) = 0.00011
 Identities = 26/79 (32%), Positives = 35/79 (44%)

Query:   158 SGTEENPEFLQTGVESQLDKDAKIIVACATGGTMKPSQNLPEGQQSRSLIAAYLLVLNGY 217
             SG  +NP+FL+  V S   +   IIV C +GG              RS+ A   L+  G+
Sbjct:    54 SGMSKNPDFLEQ-VSSHFGQSDNIIVGCQSGG--------------RSIKATTDLLHAGF 98

Query:   218 KNVYHLEGGLYKWFKEELP 236
               V  + GG   W K  LP
Sbjct:    99 TGVKDIVGGYSAWAKNGLP 117

GO:0007568 "aging" evidence=ISS

GO:0009507 "chloroplast" evidence=ISM;IDA

GO:0004792 "thiosulfate sulfurtransferase activity" evidence=IDA

GO:0006569 "tryptophan catabolic process" evidence=RCA

GO:0009684 "indoleacetic acid biosynthetic process" evidence=RCA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q94A65	STR14_ARATH	No assigned EC number	0.6711	0.8962	0.9642	yes	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

Prediction Level	EC number	Confidence of Prediction
4th Layer	2.8.1.1	LOW CONFIDENCE prediction!
3rd Layer	2.8.1	0.691

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input: estExt_fgenesh4_pg.C_LG_XV0080 hypothetical protein (239 aa) (Populus trichocarpa)

Predicted Functional Partners:

Sorry, there are no predicted associations at the current settings.

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	241
cd00158	89	cd00158, RHOD, Rhodanese Homology Domain (RHOD); a	6e-23
smart00450	100	smart00450, RHOD, Rhodanese Homology Domain	5e-21
pfam00581	106	pfam00581, Rhodanese, Rhodanese-like domain	3e-20
COG0607	110	COG0607, PspE, Rhodanese-related sulfurtransferase	1e-17
cd01522	117	cd01522, RHOD_1, Member of the Rhodanese Homology	4e-11
PRK08762	376	PRK08762, PRK08762, molybdopterin biosynthesis pro	9e-09
cd01524	90	cd01524, RHOD_Pyr_redox, Member of the Rhodanese H	3e-08
cd01518	101	cd01518, RHOD_YceA, Member of the Rhodanese Homolo	2e-07
COG1054	308	COG1054, COG1054, Predicted sulfurtransferase [Gen	3e-07
cd01444	96	cd01444, GlpE_ST, GlpE sulfurtransferase (ST) and	4e-07
cd01447	103	cd01447, Polysulfide_ST, Polysulfide-sulfurtransfe	4e-07
PRK00142	314	PRK00142, PRK00142, putative rhodanese-related sul	8e-07
cd01446	132	cd01446, DSP_MapKP, N-terminal regulatory rhodanes	8e-06
cd01519	106	cd01519, RHOD_HSP67B2, Member of the Rhodanese Hom	1e-05
cd01449	118	cd01449, TST_Repeat_2, Thiosulfate sulfurtransfera	1e-05
cd01528	101	cd01528, RHOD_2, Member of the Rhodanese Homology	3e-05
cd01523	100	cd01523, RHOD_Lact_B, Member of the Rhodanese Homo	6e-05
cd01526	122	cd01526, RHOD_ThiF, Member of the Rhodanese Homolo	1e-04
cd01448	122	cd01448, TST_Repeat_1, Thiosulfate sulfurtransfera	2e-04
PRK00162	108	PRK00162, glpE, thiosulfate sulfurtransferase; Val	2e-04
cd01520	128	cd01520, RHOD_YbbB, Member of the Rhodanese Homolo	4e-04
TIGR03167	311	TIGR03167, tRNA_sel_U_synt, tRNA 2-selenouridine s	6e-04
cd01521	110	cd01521, RHOD_PspE2, Member of the Rhodanese Homol	0.002
COG2897	285	COG2897, SseA, Rhodanese-related sulfurtransferase	0.003
PRK11784	345	PRK11784, PRK11784, tRNA 2-selenouridine synthase;	0.003

>gnl|CDD|238089 cd00158, RHOD, Rhodanese Homology Domain (RHOD); an alpha beta fold domain found duplicated in the rhodanese protein

 Score = 88.5 bits (220), Expect = 6e-23
 Identities = 38/132 (28%), Positives = 50/132 (37%), Gaps = 44/132 (33%)

Query: 99  EALRLQKENNFVILDVRPEAEFKEAHPPGAINVQIYRLIKEWTAWDIARRAAFAFFGIFS 158
           E   L  + + V+LDVR   E+   H PGAIN+ +  L +                    
Sbjct: 1   ELKELLDDEDAVLLDVREPEEYAAGHIPGAINIPLSELEERA------------------ 42

Query: 159 GTEENPEFLQTGVESQLDKDAKIIVACATGGTMKPSQNLPEGQQSRSLIAAYLLVLNGYK 218
                          +LDKD  I+V C +G               RS  AA LL   G  
Sbjct: 43  ------------ALLELDKDKPIVVYCRSGN--------------RSARAAKLLRKAGGT 76

Query: 219 NVYHLEGGLYKW 230
           NVY+LEGG+  W
Sbjct: 77  NVYNLEGGMLAW 88

The cysteine containing enzymatically active version of the domain is also found in the Cdc25 class of protein phosphatases and a variety of proteins such as sulfide dehydrogenases and certain stress proteins such as senesence specific protein 1 in plants, PspE and GlpE in bacteria and cyanide and arsenate resistance proteins. Inactive versions (no active site cysteine) are also seen in dual specificity phosphatases, ubiquitin hydrolases from yeast and in sulfuryltransferases, where they are believed to play a regulatory role in multidomain proteins. Length = 89

>gnl|CDD|197731 smart00450, RHOD, Rhodanese Homology Domain

 Score = 84.0 bits (208), Expect = 5e-21
 Identities = 39/132 (29%), Positives = 55/132 (41%), Gaps = 32/132 (24%)

Query: 105 KENNFVILDVRPEAEFKEAHPPGAINVQIYRLIKEWTAWDIARRAAFAFFGIFSGTEENP 164
            +   V+LDVR   E++  H PGA+N+ +  L+      DI                   
Sbjct: 1   NDEKVVLLDVRSPEEYEGGHIPGAVNIPLSELLDRRGELDIL------------------ 42

Query: 165 EFLQTGVESQLDKDAKIIVACATGGTMKPSQNLPEGQQSRSLIAAYLLVLNGYKNVYHLE 224
           EF +      LDKD  ++V C +G               RS  AA+LL   G+KNVY L+
Sbjct: 43  EFEELLKRLGLDKDKPVVVYCRSGN--------------RSAKAAWLLRELGFKNVYLLD 88

Query: 225 GGLYKWFKEELP 236
           GG  +W     P
Sbjct: 89  GGYKEWSAAGPP 100

An alpha beta fold found duplicated in the Rhodanese protein. The the Cysteine containing enzymatically active version of the domain is also found in the CDC25 class of protein phosphatases and a variety of proteins such as sulfide dehydrogenases and stress proteins such as Senesence specific protein 1 in plants, PspE and GlpE in bacteria and cyanide and arsenate resistance proteins. Inactive versions with a loss of the cysteine are also seen in Dual specificity phosphatases, ubiquitin hydrolases from yeast and in sulfuryltransferases. These are likely to play a role in protein interactions. Length = 100

>gnl|CDD|216005 pfam00581, Rhodanese, Rhodanese-like domain

 Score = 82.2 bits (203), Expect = 3e-20
 Identities = 40/138 (28%), Positives = 61/138 (44%), Gaps = 32/138 (23%)

Query: 96  EAKEALRLQKENNFVILDVRPEAEFKEAHPPGAINVQIYRLIKEWTAWDIARRAAFAFFG 155
            A+E   L + ++ V++DVR   E+ + H PGA+N+                        
Sbjct: 1   TAEELKALLEADDVVLIDVRSPEEYAKGHIPGAVNI---------------------PLS 39

Query: 156 IFSGTEENPEFLQTGVESQLDKDAKIIVACATGGTMKPSQNLPEGQQSRSLIAAYLLVLN 215
           + S  +   E  + G +  LDKD  I+V CA+G             Q+ +L+ A +L   
Sbjct: 40  LPSLDKLESELEELGKK--LDKDKTIVVYCASG---------NRSGQAAALLLALILKAL 88

Query: 216 GYKNVYHLEGGLYKWFKE 233
           GYKNVY L+GG   W  E
Sbjct: 89  GYKNVYVLDGGFEAWKAE 106

Rhodanese has an internal duplication. This Pfam represents a single copy of this duplicated domain. The domain is found as a single copy in other proteins, including phosphatases and ubiquitin C-terminal hydrolases. Length = 106

>gnl|CDD|223680 COG0607, PspE, Rhodanese-related sulfurtransferase [Inorganic ion transport and metabolism]

 Score = 75.4 bits (185), Expect = 1e-17
 Identities = 39/151 (25%), Positives = 54/151 (35%), Gaps = 43/151 (28%)

Query: 91  RVRSVEAKEALRLQKENNFVILDVRPEAEFKEAHPPGAINVQIYRLIKEWTAWDIARRAA 150
           R+ ++   EA  L    + V+LDVR   E++  H PGA        +K            
Sbjct: 3   RLETISEDEAALLLAGEDAVLLDVREPEEYERGHIPGAAINIPLSELKAAE--------- 53

Query: 151 FAFFGIFSGTEENPEFLQTGVESQLDKDAKIIVACATGGTMKPSQNLPEGQQSRSLIAAY 210
                                  +L  D  I+V CA+G               RS  AA 
Sbjct: 54  --------------------NLLELPDDDPIVVYCASGV--------------RSAAAAA 79

Query: 211 LLVLNGYKNVYHLEGGLYKWFKEELPEVSEE 241
            L L G+ NVY+L+GG+  W    LP V   
Sbjct: 80  ALKLAGFTNVYNLDGGIDAWKGAGLPLVRGY 110

Length = 110

>gnl|CDD|238780 cd01522, RHOD_1, Member of the Rhodanese Homology Domain superfamily, subgroup 1

 Score = 58.1 bits (141), Expect = 4e-11
 Identities = 36/126 (28%), Positives = 54/126 (42%), Gaps = 38/126 (30%)

Query: 102 RLQKENNFVILDVRPEAEFKE-AHPPGAINVQIYRLIKEWTAWDIARRAAFAFFGIFSGT 160
            LQ +   V++DVR EAE+K     P A++V          AW +           +   
Sbjct: 9   LLQADPQAVLVDVRTEAEWKFVGGVPDAVHV----------AWQV-----------YPDM 47

Query: 161 EENPEFLQTGVESQLDKDAKIIVACATGGTMKPSQNLPEGQQSRSLIAAYLLVLNGYKNV 220
           E NP FL   +E ++ KD  +++ C +G               RS+ AA      G+ NV
Sbjct: 48  EINPNFLAE-LEEKVGKDRPVLLLCRSGN--------------RSIAAAEAAAQAGFTNV 92

Query: 221 YH-LEG 225
           Y+ LEG
Sbjct: 93  YNVLEG 98

This CD includes the putative rhodanese-related sulfurtransferases of several uncharacterized proteins. Length = 117

>gnl|CDD|236337 PRK08762, PRK08762, molybdopterin biosynthesis protein MoeB; Validated

 Score = 54.6 bits (132), Expect = 9e-09
 Identities = 35/147 (23%), Positives = 50/147 (34%), Gaps = 47/147 (31%)

Query: 91  RVRSVEAKEALRLQKENNFVILDVRPEAEFKEAHPPGAINVQIYRLIKEWTAWDIARRAA 150
            +R +   EA         V++DVR   E       GA+               I R   
Sbjct: 1   SIREISPAEARARAA-QGAVLIDVREAHERASGQAEGALR--------------IPR--- 42

Query: 151 FAFFGIFSGTEENPEFLQTGVESQL-DKDAKIIVACATGGTMKPSQNLPEGQQSRSLIAA 209
                          FL+  +E+ L D+D +I++ CA+G              +RS  AA
Sbjct: 43  --------------GFLELRIETHLPDRDREIVLICASG--------------TRSAHAA 74

Query: 210 YLLVLNGYKNVYHLEGGLYKWFKEELP 236
             L   GY  V  + GG   W    LP
Sbjct: 75  ATLRELGYTRVASVAGGFSAWKDAGLP 101

Length = 376

>gnl|CDD|238782 cd01524, RHOD_Pyr_redox, Member of the Rhodanese Homology Domain superfamily

 Score = 49.6 bits (119), Expect = 3e-08
 Identities = 35/131 (26%), Positives = 49/131 (37%), Gaps = 49/131 (37%)

Query: 101 LRLQKENNFVILDVRPEAEFKEAHPPGAINVQIYRLIKEWTAWDIARRAAFAFFGIFSGT 160
           L   + +   ++DVR   EF++ H  GAIN+ +  L           R            
Sbjct: 6   LDNYRADGVTLIDVRTPQEFEKGHIKGAINIPLDEL-----------RDRLN-------- 46

Query: 161 EENPEFLQTGVESQLDKDAKIIVACATGGTMKPSQNLPEGQQSRSLIAAYLLVLNGYKNV 220
                        +L KD +IIV CA G               R  IAA +L  NG+K V
Sbjct: 47  -------------ELPKDKEIIVYCAVG--------------LRGYIAARILTQNGFK-V 78

Query: 221 YHLEGG--LYK 229
            +L+GG   Y 
Sbjct: 79  KNLDGGYKTYS 89

Included in this CD are the Lactococcus lactis NADH oxidase, Bacillus cereus NADH dehydrogenase, and Bacteroides thetaiotaomicron pyridine nucleotide-disulphide oxidoreductase, and similar rhodanese-like domains found C-terminal of the pyridine nucleotide-disulphide oxidoreductase (Pyr-redox) domain and the Pyr-redox dimerization domain. Length = 90

>gnl|CDD|238776 cd01518, RHOD_YceA, Member of the Rhodanese Homology Domain superfamily

 Score = 47.6 bits (114), Expect = 2e-07
 Identities = 36/140 (25%), Positives = 55/140 (39%), Gaps = 44/140 (31%)

Query: 95  VEAKEALRLQKENNFVILDVRPEAEFKEAHPPGAINVQIYRLIKEWTAWDIARRAAFAFF 154
           +   E   L ++   V+LDVR + E+   H  GA+N  +          D  R       
Sbjct: 4   LSPAEWNELLEDPEVVLLDVRNDYEYDIGHFKGAVNPDV----------DTFR------- 46

Query: 155 GIFSGTEENPEFLQTGVESQLD--KDAKIIVACATGGTMKPSQNLPEGQQSRSLIAAYLL 212
                     EF    ++  LD  K  K+++ C TGG              R   A+  L
Sbjct: 47  ----------EFPF-WLDENLDLLKGKKVLMYC-TGGI-------------RCEKASAYL 81

Query: 213 VLNGYKNVYHLEGGLYKWFK 232
              G+KNVY L+GG+ K+ +
Sbjct: 82  KERGFKNVYQLKGGILKYLE 101

This CD includes Escherichia coli YceA, Bacillus subtilis YbfQ, and similar uncharacterized proteins. Length = 101

>gnl|CDD|223982 COG1054, COG1054, Predicted sulfurtransferase [General function prediction only]

 Score = 50.0 bits (120), Expect = 3e-07
 Identities = 33/139 (23%), Positives = 53/139 (38%), Gaps = 40/139 (28%)

Query: 95  VEAKEALRLQKENNFVILDVRPEAEFKEAHPPGAINVQIYRLIKEWTAWDIARRAAFAFF 154
           +  K+   L  + + V++D R + E    H  GA+   I    +E+ AW           
Sbjct: 115 LSPKDWNELLSDPDVVVIDTRNDYEVAIGHFEGAVEPDI-ETFREFPAWVEENLDLL--- 170

Query: 155 GIFSGTEENPEFLQTGVESQLDKDAKIIVACATGGTMKPSQNLPEGQQSRSLIAAYLLVL 214
                                 KD K+++ C TGG              R   A+  +  
Sbjct: 171 ----------------------KDKKVVMYC-TGGI-------------RCEKASAWMKE 194

Query: 215 NGYKNVYHLEGGLYKWFKE 233
           NG+K VYHLEGG+ K+ ++
Sbjct: 195 NGFKEVYHLEGGILKYLED 213

Length = 308

>gnl|CDD|238721 cd01444, GlpE_ST, GlpE sulfurtransferase (ST) and homologs are members of the Rhodanese Homology Domain superfamily

 Score = 46.5 bits (111), Expect = 4e-07
 Identities = 30/135 (22%), Positives = 41/135 (30%), Gaps = 49/135 (36%)

Query: 99  EALRL-QKENNFVILDVRPEAEF--KEAHPPGAINVQIYRLIKEWTAWDIARRAAFAFFG 155
           E   L       V+LDVR  A +     H PGAI++            D      +    
Sbjct: 6   ELAELLAAGEAPVLLDVRDPASYAALPDHIPGAIHL------------DEDSLDDWLG-- 51

Query: 156 IFSGTEENPEFLQTGVESQLDKDAKIIVACATGGTMKPSQNLPEGQQSRSLIAAYLLVLN 215
                              LD+D  ++V C  G +   S  L          A  L    
Sbjct: 52  ------------------DLDRDRPVVVYCYHGNS---SAQL----------AQALRE-A 79

Query: 216 GYKNVYHLEGGLYKW 230
           G+ +V  L GG   W
Sbjct: 80  GFTDVRSLAGGFEAW 94

Unlike other rhodanese sulfurtransferases, GlpE is a single domain protein but indications are that it functions as a dimer. The active site contains a catalytically active cysteine. Length = 96

>gnl|CDD|238724 cd01447, Polysulfide_ST, Polysulfide-sulfurtransferase - Rhodanese Homology Domain

 Score = 46.7 bits (111), Expect = 4e-07
 Identities = 30/138 (21%), Positives = 45/138 (32%), Gaps = 41/138 (29%)

Query: 95  VEAKEALRLQKENNFVILDVR--PEAEFKEAHPPGAINVQIYRLIKEWTAWDIARRAAFA 152
           +  ++A  L      +++DVR   E E +    PGA +                 R    
Sbjct: 1   LSPEDARALLGSPGVLLVDVRDPRELE-RTGMIPGAFHAP---------------RGMLE 44

Query: 153 FFGIFSGTEENPEFLQTGVESQLDKDAKIIVACATGGTMKPSQNLPEGQQSRSLIAAYLL 212
           F+         P F          +D   +  CA+G               RS +A   L
Sbjct: 45  FWADPDSPYHKPAF---------AEDKPFVFYCASGW--------------RSALAGKTL 81

Query: 213 VLNGYKNVYHLEGGLYKW 230
              G K VY++EGG   W
Sbjct: 82  QDMGLKPVYNIEGGFKDW 99

This domain is believed to serve as a polysulfide binding and transferase domain in anaerobic gram-negative bacteria, functioning in oxidative phosphorylation with polysulfide-sulfur as a terminal electron acceptor. The active site contains the same conserved cysteine that is the catalytic residue in other Rhodanese Homology Domain proteins. Length = 103

>gnl|CDD|234663 PRK00142, PRK00142, putative rhodanese-related sulfurtransferase; Provisional

 Score = 48.7 bits (117), Expect = 8e-07
 Identities = 35/143 (24%), Positives = 55/143 (38%), Gaps = 48/143 (33%)

Query: 95  VEAKEALRLQKENNFVILDVRPEAEFKEAHPPGAINVQI--YRLIKEWTAWDIARRAAFA 152
           ++ KE   L  + + V +D+R + E++  H   AI   I  +R                 
Sbjct: 114 LKPKEVNELLDDPDVVFIDMRNDYEYEIGHFENAIEPDIETFR----------------- 156

Query: 153 FFGIFSGTEENPEFLQTGVESQLD--KDAKIIVACATGGTMKPSQNLPEGQQSRSLIAAY 210
                       EF    VE  LD  KD K+++ C TGG              R   A+ 
Sbjct: 157 ------------EFPPW-VEENLDPLKDKKVVMYC-TGGI-------------RCEKASA 189

Query: 211 LLVLNGYKNVYHLEGGLYKWFKE 233
            +   G+K VY LEGG+  + ++
Sbjct: 190 WMKHEGFKEVYQLEGGIITYGED 212

Length = 314

>gnl|CDD|238723 cd01446, DSP_MapKP, N-terminal regulatory rhodanese domain of dual specificity phosphatases (DSP), such as Mapk Phosphatase

 Score = 43.8 bits (104), Expect = 8e-06
 Identities = 29/130 (22%), Positives = 49/130 (37%), Gaps = 16/130 (12%)

Query: 108 NFVILDVRPEAEFKEAHPPGAINVQIYRLIKEWTAWDIARRAAFAFFGIFSGTEENPEFL 167
             ++LD RP  E+  +H  GA+NV    +++        RR      G            
Sbjct: 17  RLLLLDCRPFLEYSSSHIRGAVNVCCPTILR--------RR---LQGGKIL---LQQLLS 62

Query: 168 QTGVESQLDKDAKIIVACATGGTMKPSQNLPEGQQSRSLIAAYLLVLNGYKNVYHLEGGL 227
                 +L +   + V      +    + L E   + S++   L  L    +VY L+GG 
Sbjct: 63  CPEDRDRLRRGESLAVVVYDESSSDRER-LREDSTAESVLGKLLRKLQEGCSVYLLKGG- 120

Query: 228 YKWFKEELPE 237
           ++ F  E PE
Sbjct: 121 FEQFSSEFPE 130

This domain is believed to determine substrate specificity by binding the substrate, such as ERK2, and activating the C-terminal catalytic domain by inducing a conformational change. This domain has homology to the Rhodanese Homology Domain. Length = 132

>gnl|CDD|238777 cd01519, RHOD_HSP67B2, Member of the Rhodanese Homology Domain superfamily

 Score = 42.6 bits (101), Expect = 1e-05
 Identities = 33/123 (26%), Positives = 45/123 (36%), Gaps = 33/123 (26%)

Query: 108 NFVILDVRPEAEFKEAHPPGAINVQIYRLIKEWTAWDIARRAAFAFFGIFSGTEENPEFL 167
           N V++DVR   E K    PGAIN+ +  L                     + +EE  EF 
Sbjct: 15  NKVLIDVREPEELKTGKIPGAINIPLSSLPDA-----------------LALSEE--EFE 55

Query: 168 QTGVESQLDKDAKIIVACATGGTMKPSQNLPEGQQSRSLIAAYLLVLNGYKNVYHLEGGL 227
           +     +  KD ++I  C  G               RS  AA L    GY+NV +  G  
Sbjct: 56  KKYGFPKPSKDKELIFYCKAGV--------------RSKAAAELARSLGYENVGNYPGSW 101

Query: 228 YKW 230
             W
Sbjct: 102 LDW 104

This CD includes the heat shock protein 67B2 of Drosophila melanogaster and other similar proteins, many of which are uncharacterized. Length = 106

>gnl|CDD|238726 cd01449, TST_Repeat_2, Thiosulfate sulfurtransferase (TST), C-terminal, catalytic domain

 Score = 42.6 bits (101), Expect = 1e-05
 Identities = 33/148 (22%), Positives = 52/148 (35%), Gaps = 44/148 (29%)

Query: 95  VEAKEALRLQKENNFVILDVRPEAEF-----------KEAHPPGAINVQIYRLIKEWTAW 143
           V A+E L      +  ++D R    F           +  H PGA+N+    L+ E    
Sbjct: 1   VTAEEVLANLDSGDVQLVDARSPERFRGEVPEPRPGLRSGHIPGAVNIPWTSLLDE---- 56

Query: 144 DIARRAAFAFFGIFSGTEENPEFLQTGVESQ-LDKDAKIIVACATGGTMKPSQNLPEGQQ 202
                          GT ++PE L+    +  +  D  +IV C +G              
Sbjct: 57  --------------DGTFKSPEELRALFAALGITPDKPVIVYCGSG-------------- 88

Query: 203 SRSLIAAYLLVLNGYKNVYHLEGGLYKW 230
             + +    L L GYKNV   +G   +W
Sbjct: 89  VTACVLLLALELLGYKNVRLYDGSWSEW 116

TST contains 2 copies of the Rhodanese Homology Domain; this is the second repeat. Only the second repeat contains the catalytically active Cys residue. Length = 118

>gnl|CDD|238786 cd01528, RHOD_2, Member of the Rhodanese Homology Domain superfamily, subgroup 2

 Score = 41.2 bits (97), Expect = 3e-05
 Identities = 29/123 (23%), Positives = 47/123 (38%), Gaps = 43/123 (34%)

Query: 108 NFVILDVRPEAEFKEAHPPGAINVQIYRLIKEWTAWDIARRAAFAFFGIFSGTEENPEFL 167
             V++DVR   E + A  PG +++ +   I E                    ++E     
Sbjct: 17  EPVLIDVREPEELEIAFLPGFLHLPM-SEIPER-------------------SKELDS-- 54

Query: 168 QTGVESQLDKDAKIIVACATGGTMKPSQNLPEGQQSRSLIAAYLLVLNGYKNVYHLEGGL 227
                   + D  I+V C  GG              RS+  A  L+  G++NVY+L+GG+
Sbjct: 55  -------DNPDKDIVVLCHHGG--------------RSMQVAQWLLRQGFENVYNLQGGI 93

Query: 228 YKW 230
             W
Sbjct: 94  DAW 96

Subgroup 2 includes uncharacterized putative rhodanese-related domains. Length = 101

>gnl|CDD|238781 cd01523, RHOD_Lact_B, Member of the Rhodanese Homology Domain superfamily

 Score = 40.6 bits (95), Expect = 6e-05
 Identities = 28/120 (23%), Positives = 40/120 (33%), Gaps = 39/120 (32%)

Query: 111 ILDVRPEAEFKEAHPPGAINVQIYRLIKEWTAWDIARRAAFAFFGIFSGTEENPEFLQTG 170
           ILDVR E++++     G  N   +                   F      E+        
Sbjct: 18  ILDVRNESDYERWKIDGENNTPYFDPY----------------FDFLEIEED-------- 53

Query: 171 VESQLDKDAKIIVACATGGTMKPSQNLPEGQQSRSLIAAYLLVLNGYKNVYHLEGGLYKW 230
           +  QL  D ++ V CA  G+              S   A LL   GY  V +L GG+  W
Sbjct: 54  ILDQLPDDQEVTVICAKEGS--------------SQFVAELLAERGYD-VDYLAGGMKAW 98

This CD includes predicted proteins with rhodanese-like domains found N-terminal of the metallo-beta-lactamase domain. Length = 100

>gnl|CDD|238784 cd01526, RHOD_ThiF, Member of the Rhodanese Homology Domain superfamily

 Score = 40.4 bits (95), Expect = 1e-04
 Identities = 37/141 (26%), Positives = 48/141 (34%), Gaps = 39/141 (27%)

Query: 91  RVRSVEAKEALRLQKENNFVILDVRPEAEFKEAHPPGAINVQIYRLIKEWTAWDIARRAA 150
           RV   + K    LQ     V+LDVRP+  F+    P AIN+ +  L+          +AA
Sbjct: 9   RVSVKDYKN--ILQAGKKHVLLDVRPKVHFEICRLPEAINIPLSELL---------SKAA 57

Query: 151 FAFFGIFSGTEENPEFLQTGVESQLDKDAKIIVACATGGTMKPSQNLPEGQQSRSLIAAY 210
                     E              DKD+ I V C  G     SQ            A  
Sbjct: 58  ----------ELKSLQEL---PLDNDKDSPIYVVCRRGND---SQ-----------TAVR 90

Query: 211 LLV-LNGYKNVYHLEGGLYKW 230
            L  L   + V  + GGL  W
Sbjct: 91  KLKELGLERFVRDIIGGLKAW 111

This CD includes several putative molybdopterin synthase sulfurylases including the molybdenum cofactor biosynthetic protein (CnxF) of Aspergillus nidulans and the molybdenum cofactor synthesis protein 3 (MOCS3) of Homo sapiens. These rhodanese-like domains are found C-terminal of the ThiF and MoeZ_MoeB domains. Length = 122

>gnl|CDD|238725 cd01448, TST_Repeat_1, Thiosulfate sulfurtransferase (TST), N-terminal, inactive domain

 Score = 39.9 bits (94), Expect = 2e-04
 Identities = 31/147 (21%), Positives = 48/147 (32%), Gaps = 35/147 (23%)

Query: 95  VEAKEALRLQKENNFVILDVR-------PEAEFKEAHPPGAINVQIYRLIKEWTAWDIAR 147
           V          + +  ILD R          E+ E H PGA+              D+  
Sbjct: 2   VSPDWLAEHLDDPDVRILDARWYLPDRDGRKEYLEGHIPGAVFF--------DLDEDLDD 53

Query: 148 RAAFAFFGIFSGTEENPEFLQTGVESQ-LDKDAKIIVACATGGTMKPSQNLPEGQQSRSL 206
           ++             +PE     + S  +  D  ++V    GG             +R  
Sbjct: 54  KSPGPHMLP------SPEEFAELLGSLGISNDDTVVVY-DDGGGF---------FAAR-- 95

Query: 207 IAAYLLVLNGYKNVYHLEGGLYKWFKE 233
            A + L   G++NV  L+GGL  W  E
Sbjct: 96  -AWWTLRYFGHENVRVLDGGLQAWKAE 121

TST contains 2 copies of the Rhodanese Homology Domain; this is the 1st repeat, which does not contain the catalytically active Cys residue. The role of the 1st repeat is uncertain, but it is believed to be involved in protein interaction. Length = 122

>gnl|CDD|178908 PRK00162, glpE, thiosulfate sulfurtransferase; Validated

 Score = 39.2 bits (92), Expect = 2e-04
 Identities = 31/146 (21%), Positives = 49/146 (33%), Gaps = 48/146 (32%)

Query: 94  SVEAKEALRLQKENNFVILDVRPEAEFKEAHPPGAINVQIYRLIKEWTAWDIARRAAFAF 153
           +VE        +E   V++D+R    F   H PGA ++    L                 
Sbjct: 8   NVEQAHQKL--QEGGAVLVDIRDPQSFAMGHAPGAFHLTNDSL----------------- 48

Query: 154 FGIFSGTEENPEFLQTGVESQLDKDAKIIVACATGGTMKPSQNLPEGQQSRSLIAAYLLV 213
                       F++     Q D D  ++V C              G  S+   AA  L+
Sbjct: 49  ----------GAFMR-----QADFDTPVMVMCY------------HGNSSQG--AAQYLL 79

Query: 214 LNGYKNVYHLEGGLYKWFKEELPEVS 239
             G+  VY ++GG   W +    EV+
Sbjct: 80  QQGFDVVYSIDGGFEAWRRTFPAEVA 105

Length = 108

>gnl|CDD|238778 cd01520, RHOD_YbbB, Member of the Rhodanese Homology Domain superfamily

 Score = 38.8 bits (91), Expect = 4e-04
 Identities = 40/148 (27%), Positives = 61/148 (41%), Gaps = 36/148 (24%)

Query: 97  AKEALRLQKENNFVILDVRPEAEFKEAHPPGAINVQIYRLIKEWTAWDIARRAA----FA 152
             E L   ++ +  ++DVR   EF E H PGAIN+ +          D   RA     + 
Sbjct: 2   TAEDLLALRKADGPLIDVRSPKEFFEGHLPGAINLPLL---------DDEERALVGTLYK 52

Query: 153 FFGIFSGTEENPEFLQTGVESQLDK--------DAKIIVACATGGTMKPSQNLPEGQQSR 204
             G  +  E   E +   ++  L++        D K+++ CA GG              R
Sbjct: 53  QQGREAAIELGLELVSGKLKRILNEAWEARLERDPKLLIYCARGGM-------------R 99

Query: 205 SLIAAYLLVLNGYKNVYHLEGGLYKWFK 232
           S   A+LL   G  +V  LEGG YK ++
Sbjct: 100 SQSLAWLLESLGI-DVPLLEGG-YKAYR 125

This CD includes several putative ATP /GTP binding proteins including E. coli YbbB. Length = 128

>gnl|CDD|234132 TIGR03167, tRNA_sel_U_synt, tRNA 2-selenouridine synthase

 Score = 39.9 bits (94), Expect = 6e-04
 Identities = 36/144 (25%), Positives = 54/144 (37%), Gaps = 31/144 (21%)

Query: 107 NNFVILDVRPEAEFKEAHPPGAIN---------VQIYRLIKEWTAWDIARRAAFAFFGIF 157
               ++DVR  AEF E H PGAIN          ++  L K+      A +   A     
Sbjct: 1   AFDPLIDVRSPAEFAEGHLPGAINLPLLNDEERAEVGTLYKQVGP-FAAIKLGLALVS-- 57

Query: 158 SGTEENPEFLQTGVESQLDKDAKIIVACATGGTMKPSQNLPEGQQSRSLIAAYLLVLNGY 217
                    ++    +  D   + ++ C  GG              RS   A+LL   G+
Sbjct: 58  ---PNLAAHVEQ-WRAFADGPPQPLLYCWRGG-------------MRSGSLAWLLAQIGF 100

Query: 218 KNVYHLEGGLYKWFKEELPEVSEE 241
             V  LEGG YK ++  + +  EE
Sbjct: 101 -RVPRLEGG-YKAYRRFVIDQLEE 122

The Escherichia coli YbbB protein was shown to encode a selenophosphate-dependent tRNA 2-selenouridine synthase, essential for modification of some tRNAs to replace a sulfur atom with selenium. This enzyme works with SelD, the selenium donor protein, which also acts in selenocysteine incorporation. Although the members of this protein family show a fairly deep split, sequences from both sides of the split are supported by co-occurence with, and often proximity to, the selD gene [Protein synthesis, tRNA and rRNA base modification]. Length = 311

>gnl|CDD|238779 cd01521, RHOD_PspE2, Member of the Rhodanese Homology Domain superfamily

 Score = 36.6 bits (85), Expect = 0.002
 Identities = 11/23 (47%), Positives = 15/23 (65%)

Query: 108 NFVILDVRPEAEFKEAHPPGAIN 130
           +FV++DVR    +   H PGAIN
Sbjct: 25  DFVLVDVRSAEAYARGHVPGAIN 47

This CD includes the putative rhodanese-like protein, Psp2, of Yersinia pestis biovar Medievalis and other similar uncharacterized proteins. Length = 110

>gnl|CDD|225450 COG2897, SseA, Rhodanese-related sulfurtransferase [Inorganic ion transport and metabolism]

 Score = 37.7 bits (88), Expect = 0.003
 Identities = 35/181 (19%), Positives = 56/181 (30%), Gaps = 52/181 (28%)

Query: 61  GLIIQNAATKPAKSPAEEDWKTKRELLLQKRVRSVEAKEALRLQKENNFVILDVRPEAEF 120
           GL ++    +P  +     +  K  +       ++E    L         ++D R    F
Sbjct: 133 GLPLETEPPEPPPTTFSAKYNVKAVVDATLVADALEVPAVL---------LIDARSPERF 183

Query: 121 --KEAHP--------PGAINVQIYRLIKEWTAW-DIARRAAFAFFGIFSGTEENPEFLQT 169
             KE  P        PGAIN+        WT   D            F   EE       
Sbjct: 184 RGKEPEPRDGKAGHIPGAINI-------PWTDLVDDGGL--------FKSPEEIARLYA- 227

Query: 170 GVESQLDKDAKIIVACATGGTMKPSQNLPEGQQSRSLIAAYLLVLNGYKNVYHLEGGLYK 229
             ++ +D D ++IV C +G               R+ +    L   G  N    +G   +
Sbjct: 228 --DAGIDPDKEVIVYCGSG--------------VRASVTWLALAELGGPNNRLYDGSWSE 271

Query: 230 W 230
           W
Sbjct: 272 W 272

Length = 285

>gnl|CDD|236982 PRK11784, PRK11784, tRNA 2-selenouridine synthase; Provisional

 Score = 37.5 bits (88), Expect = 0.003
 Identities = 31/140 (22%), Positives = 45/140 (32%), Gaps = 30/140 (21%)

Query: 99  EALRLQKENNFVILDVRPEAEFKEAHPPGAIN---------VQIYRLIKEWTAWDIARRA 149
           +  R    N+  ++DVR   EF E H PGAIN          ++    K+      A   
Sbjct: 6   QDFRALFLNDTPLIDVRSPIEFAEGHIPGAINLPLLNDEERAEVGTCYKQQGQ-FAAIAL 64

Query: 150 AFAFFGIFSGTEENPEFLQTGVESQLDKDAKIIVACATGGTMKPSQNLPEGQQSRSLIAA 209
             A               +         + + ++ C  GG +            RS    
Sbjct: 65  GHALVA-----GNIAAHREEAWADFPRANPRGLLYCWRGG-L------------RSGSVQ 106

Query: 210 YLLVLNGYKNVYHLEGGLYK 229
             L   G  +V  LEGG YK
Sbjct: 107 QWLKEAGI-DVPRLEGG-YK 124

Length = 345

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	241
KOG1530	136	consensus Rhodanese-related sulfurtransferase [Ino	99.89
PLN02160	136	thiosulfate sulfurtransferase	99.89
cd01533	109	4RHOD_Repeat_2 Member of the Rhodanese Homology Do	99.88
PRK00162	108	glpE thiosulfate sulfurtransferase; Validated	99.88
cd01518	101	RHOD_YceA Member of the Rhodanese Homology Domain	99.88
cd01527	99	RHOD_YgaP Member of the Rhodanese Homology Domain	99.88
cd01519	106	RHOD_HSP67B2 Member of the Rhodanese Homology Doma	99.86
cd01521	110	RHOD_PspE2 Member of the Rhodanese Homology Domain	99.85
cd01534	95	4RHOD_Repeat_3 Member of the Rhodanese Homology Do	99.85
TIGR03865	162	PQQ_CXXCW PQQ-dependent catabolism-associated CXXC	99.85
cd01523	100	RHOD_Lact_B Member of the Rhodanese Homology Domai	99.85
cd01447	103	Polysulfide_ST Polysulfide-sulfurtransferase - Rho	99.85
cd01520	128	RHOD_YbbB Member of the Rhodanese Homology Domain	99.84
cd01444	96	GlpE_ST GlpE sulfurtransferase (ST) and homologs a	99.84
cd01448	122	TST_Repeat_1 Thiosulfate sulfurtransferase (TST),	99.84
cd01526	122	RHOD_ThiF Member of the Rhodanese Homology Domain	99.84
cd01528	101	RHOD_2 Member of the Rhodanese Homology Domain sup	99.84
cd01524	90	RHOD_Pyr_redox Member of the Rhodanese Homology Do	99.83
smart00450	100	RHOD Rhodanese Homology Domain. An alpha beta fold	99.83
cd01525	105	RHOD_Kc Member of the Rhodanese Homology Domain su	99.83
cd01449	118	TST_Repeat_2 Thiosulfate sulfurtransferase (TST),	99.83
cd01522	117	RHOD_1 Member of the Rhodanese Homology Domain sup	99.82
PLN02723	320	3-mercaptopyruvate sulfurtransferase	99.82
cd01530	121	Cdc25 Cdc25 phosphatases are members of the Rhodan	99.82
PF00581	113	Rhodanese: Rhodanese-like domain This Prosite entr	99.82
PRK11493	281	sseA 3-mercaptopyruvate sulfurtransferase; Provisi	99.82
PRK01415	247	hypothetical protein; Validated	99.82
cd01535	145	4RHOD_Repeat_4 Member of the Rhodanese Homology Do	99.81
cd01445	138	TST_Repeats Thiosulfate sulfurtransferases (TST) c	99.8
cd01529	96	4RHOD_Repeats Member of the Rhodanese Homology Dom	99.8
cd01532	92	4RHOD_Repeat_1 Member of the Rhodanese Homology Do	99.79
cd00158	89	RHOD Rhodanese Homology Domain (RHOD); an alpha be	99.79
COG2897	285	SseA Rhodanese-related sulfurtransferase [Inorgani	99.79
PLN02723	320	3-mercaptopyruvate sulfurtransferase	99.79
PRK11493	281	sseA 3-mercaptopyruvate sulfurtransferase; Provisi	99.79
PRK09629	610	bifunctional thiosulfate sulfurtransferase/phospha	99.79
PRK08762	376	molybdopterin biosynthesis protein MoeB; Validated	99.79
cd01531	113	Acr2p Eukaryotic arsenate resistance proteins are	99.78
COG0607	110	PspE Rhodanese-related sulfurtransferase [Inorgani	99.78
PRK05320	257	rhodanese superfamily protein; Provisional	99.77
PRK00142	314	putative rhodanese-related sulfurtransferase; Prov	99.75
TIGR02981	101	phageshock_pspE phage shock operon rhodanese PspE.	99.74
PRK09629	610	bifunctional thiosulfate sulfurtransferase/phospha	99.73
cd01443	113	Cdc25_Acr2p Cdc25 enzymes are members of the Rhoda	99.73
COG2897	285	SseA Rhodanese-related sulfurtransferase [Inorgani	99.72
PRK10287	104	thiosulfate:cyanide sulfurtransferase; Provisional	99.72
PRK07878	392	molybdopterin biosynthesis-like protein MoeZ; Vali	99.72
TIGR03167	311	tRNA_sel_U_synt tRNA 2-selenouridine synthase. The	99.69
PRK07411	390	hypothetical protein; Validated	99.67
PRK05597	355	molybdopterin biosynthesis protein MoeB; Validated	99.66
PRK11784	345	tRNA 2-selenouridine synthase; Provisional	99.65
cd01446	132	DSP_MapKP N-terminal regulatory rhodanese domain o	99.62
COG1054	308	Predicted sulfurtransferase [General function pred	99.59
PRK05600	370	thiamine biosynthesis protein ThiF; Validated	99.56
KOG1529	286	consensus Mercaptopyruvate sulfurtransferase/thios	99.33
PRK01269	482	tRNA s(4)U8 sulfurtransferase; Provisional	99.33
KOG3772	325	consensus M-phase inducer phosphatase [Cell cycle	99.25
KOG2017	427	consensus Molybdopterin synthase sulfurylase [Coen	99.08
KOG1529	286	consensus Mercaptopyruvate sulfurtransferase/thios	98.99
COG5105	427	MIH1 Mitotic inducer, protein phosphatase [Cell di	98.41
COG2603	334	Predicted ATPase [General function prediction only	97.65
KOG1717	343	consensus Dual specificity phosphatase [Defense me	95.8
PF04273	110	DUF442: Putative phosphatase (DUF442); InterPro: I	95.5
KOG3636	669	consensus Uncharacterized conserved protein, conta	94.82
KOG1093	725	consensus Predicted protein kinase (contains TBC a	94.74
TIGR01244	135	conserved hypothetical protein TIGR01244. No membe	94.55
PF13350	164	Y_phosphatase3: Tyrosine phosphatase family; PDB:	92.0
PRK00142	314	putative rhodanese-related sulfurtransferase; Prov	90.96
cd00127	139	DSPc Dual specificity phosphatases (DSP); Ser/Thr	88.03
PF01451	138	LMWPc: Low molecular weight phosphotyrosine protei	84.4
TIGR03167	311	tRNA_sel_U_synt tRNA 2-selenouridine synthase. The	84.01
smart00195	138	DSPc Dual specificity phosphatase, catalytic domai	83.2
COG3453	130	Uncharacterized protein conserved in bacteria [Fun	80.3

>KOG1530 consensus Rhodanese-related sulfurtransferase [Inorganic ion transport and metabolism]

Probab=99.89  E-value=3.6e-23  Score=163.12  Aligned_cols=116  Identities=36%  Similarity=0.554  Sum_probs=103.0

Q ss_pred             hccccccHHHHHHHhcCCCeEEEEcCChhhhhhCCCCCCeeechhhHHhhhhhHHHHHHhhhhhccccCCCCCChHHHhh
Q 026264           90 KRVRSVEAKEALRLQKENNFVILDVRPEAEFKEAHPPGAINVQIYRLIKEWTAWDIARRAAFAFFGIFSGTEENPEFLQT  169 (241)
Q Consensus        90 ~~~~~Is~~el~~~l~~~~~~lIDvR~~~Ey~~ghIpGAinip~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  169 (241)
                      ..+..++.++++.+++.+++++||||.++||.+||||.+||||+.....                   .+..++++|+++
T Consensus        20 ~~~~sv~~~qvk~L~~~~~~~llDVRepeEfk~gh~~~siNiPy~~~~~-------------------~~~l~~~eF~kq   80 (136)
T KOG1530|consen   20 SNPQSVSVEQVKNLLQHPDVVLLDVREPEEFKQGHIPASINIPYMSRPG-------------------AGALKNPEFLKQ   80 (136)
T ss_pred             CCcEEEEHHHHHHHhcCCCEEEEeecCHHHhhccCCcceEecccccccc-------------------ccccCCHHHHHH
Confidence            4566899999999999989999999999999999999999999976543                   234568999999


Q ss_pred             hhhcCCCCCCeEEEEcCCCCCCCCCCCCCCchhhHHHHHHHHHHHcCCcceeEccccHHHHHhCCCCcc
Q 026264          170 GVESQLDKDAKIIVACATGGTMKPSQNLPEGQQSRSLIAAYLLVLNGYKNVYHLEGGLYKWFKEELPEV  238 (241)
Q Consensus       170 ~~~~~i~~~~~IVvyC~~G~~~~~~~~~~~~~~~rs~~aa~~L~~~Gy~nV~~l~GG~~~W~~~g~p~~  238 (241)
                      +-....+.++.|||+|.+|.              |+..|...|..+||+||.+|.|||.+|.+.++|..
T Consensus        81 vg~~kp~~d~eiIf~C~SG~--------------Rs~~A~~~l~s~Gyknv~ny~Gs~~~W~~k~~~~~  135 (136)
T KOG1530|consen   81 VGSSKPPHDKEIIFGCASGV--------------RSLKATKILVSAGYKNVGNYPGSYLAWVDKGGPKK  135 (136)
T ss_pred             hcccCCCCCCcEEEEeccCc--------------chhHHHHHHHHcCcccccccCccHHHHHHccCCCC
Confidence            65566677789999999998              99999999999999999999999999999998864

>PLN02160 thiosulfate sulfurtransferase

Probab=99.89  E-value=7.3e-23  Score=164.89  Aligned_cols=116  Identities=36%  Similarity=0.558  Sum_probs=94.6

Q ss_pred             ccccccHHHHHHHhcCCCeEEEEcCChhhhhhCCCCCC--eeechhhHHhhhhhHHHHHHhhhhhccccCCCCCChHHHh
Q 026264           91 RVRSVEAKEALRLQKENNFVILDVRPEAEFKEAHPPGA--INVQIYRLIKEWTAWDIARRAAFAFFGIFSGTEENPEFLQ  168 (241)
Q Consensus        91 ~~~~Is~~el~~~l~~~~~~lIDvR~~~Ey~~ghIpGA--inip~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  168 (241)
                      ++..|+++++.++++. +.+|||||++.||..||||||  +|+|+..+...                   +....++|+.
T Consensus        13 ~~~~i~~~e~~~~~~~-~~~lIDVR~~~E~~~ghIpgA~~iniP~~~~~~~-------------------~~l~~~~~~~   72 (136)
T PLN02160         13 EVVSVDVSQAKTLLQS-GHQYLDVRTQDEFRRGHCEAAKIVNIPYMLNTPQ-------------------GRVKNQEFLE   72 (136)
T ss_pred             eeeEeCHHHHHHHHhC-CCEEEECCCHHHHhcCCCCCcceecccchhcCcc-------------------cccCCHHHHH
Confidence            4678999999999876 468999999999999999999  89997543210                   0111234544


Q ss_pred             hhhhcCCCCCCeEEEEcCCCCCCCCCCCCCCchhhHHHHHHHHHHHcCCcceeEccccHHHHHhCCCCcccCC
Q 026264          169 TGVESQLDKDAKIIVACATGGTMKPSQNLPEGQQSRSLIAAYLLVLNGYKNVYHLEGGLYKWFKEELPEVSEE  241 (241)
Q Consensus       169 ~~~~~~i~~~~~IVvyC~~G~~~~~~~~~~~~~~~rs~~aa~~L~~~Gy~nV~~l~GG~~~W~~~g~p~~~g~  241 (241)
                      . ....++++++||+||++|.              ||..++..|.+.||++|++|+|||.+|.+.|+|+++.|
T Consensus        73 ~-~~~~~~~~~~IivyC~sG~--------------RS~~Aa~~L~~~G~~~v~~l~GG~~~W~~~g~p~~~~~  130 (136)
T PLN02160         73 Q-VSSLLNPADDILVGCQSGA--------------RSLKATTELVAAGYKKVRNKGGGYLAWVDHSFPINQEE  130 (136)
T ss_pred             H-HHhccCCCCcEEEECCCcH--------------HHHHHHHHHHHcCCCCeeecCCcHHHHhhCCCCccccc
Confidence            4 3334678899999999998              99999999999999999999999999999999998754

>cd01533 4RHOD_Repeat_2 Member of the Rhodanese Homology Domain superfamily, repeat 2

Probab=99.88  E-value=2.1e-22  Score=155.20  Aligned_cols=101  Identities=30%  Similarity=0.406  Sum_probs=85.6

Q ss_pred             hccccccHHHHHHHhcCC-CeEEEEcCChhhhhhCCCCCCeeechhhHHhhhhhHHHHHHhhhhhccccCCCCCChHHHh
Q 026264           90 KRVRSVEAKEALRLQKEN-NFVILDVRPEAEFKEAHPPGAINVQIYRLIKEWTAWDIARRAAFAFFGIFSGTEENPEFLQ  168 (241)
Q Consensus        90 ~~~~~Is~~el~~~l~~~-~~~lIDvR~~~Ey~~ghIpGAinip~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  168 (241)
                      ..+..|+++++.+.++++ +.+|||||++.||..||||||+|+|+..+...                           ++
T Consensus         7 ~~~~~i~~~~l~~~~~~~~~~~liDvR~~~e~~~ghIpgainip~~~l~~~---------------------------~~   59 (109)
T cd01533           7 RHTPSVSADELAALQARGAPLVVLDGRRFDEYRKMTIPGSVSCPGAELVLR---------------------------VG   59 (109)
T ss_pred             ccCCcCCHHHHHHHHhcCCCcEEEeCCCHHHHhcCcCCCceeCCHHHHHHH---------------------------HH
Confidence            345679999999998765 57899999999999999999999999766431                           11


Q ss_pred             hhhhcCCCCCCeEEEEcCCCCCCCCCCCCCCchhhHHHHHHHHHHHcCCcc-eeEccccHHHHHhCC
Q 026264          169 TGVESQLDKDAKIIVACATGGTMKPSQNLPEGQQSRSLIAAYLLVLNGYKN-VYHLEGGLYKWFKEE  234 (241)
Q Consensus       169 ~~~~~~i~~~~~IVvyC~~G~~~~~~~~~~~~~~~rs~~aa~~L~~~Gy~n-V~~l~GG~~~W~~~g  234 (241)
                      .   ...+++++|||||++|.              ||..++..|+..||+| |++|+||+.+|..+|
T Consensus        60 ~---l~~~~~~~ivv~C~~G~--------------rs~~a~~~L~~~G~~~~v~~l~gG~~~W~~~g  109 (109)
T cd01533          60 E---LAPDPRTPIVVNCAGRT--------------RSIIGAQSLINAGLPNPVAALRNGTQGWTLAG  109 (109)
T ss_pred             h---cCCCCCCeEEEECCCCc--------------hHHHHHHHHHHCCCCcceeEecCCHHHHHhcC
Confidence            1   22456789999999998              9999999999999988 999999999999876

This CD includes putative rhodanese-related sulfurtransferases which contain 4 copies of the Rhodanese Homology Domain. This CD aligns the 2nd repeat which does contain the putative catalytic Cys residue.

>PRK00162 glpE thiosulfate sulfurtransferase; Validated

Probab=99.88  E-value=1.7e-22  Score=155.46  Aligned_cols=103  Identities=29%  Similarity=0.488  Sum_probs=91.0

Q ss_pred             ccccccHHHHHHHhcCCCeEEEEcCChhhhhhCCCCCCeeechhhHHhhhhhHHHHHHhhhhhccccCCCCCChHHHhhh
Q 026264           91 RVRSVEAKEALRLQKENNFVILDVRPEAEFKEAHPPGAINVQIYRLIKEWTAWDIARRAAFAFFGIFSGTEENPEFLQTG  170 (241)
Q Consensus        91 ~~~~Is~~el~~~l~~~~~~lIDvR~~~Ey~~ghIpGAinip~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  170 (241)
                      .++.|+++++.+.++.++.+|||||++.||..||||||+|+|+..+..                           +    
T Consensus         3 ~~~~is~~el~~~l~~~~~~ivDvR~~~e~~~ghi~gA~~ip~~~l~~---------------------------~----   51 (108)
T PRK00162          3 QFECINVEQAHQKLQEGGAVLVDIRDPQSFAMGHAPGAFHLTNDSLGA---------------------------F----   51 (108)
T ss_pred             CccccCHHHHHHHHHcCCCEEEEcCCHHHHhcCCCCCCeECCHHHHHH---------------------------H----
Confidence            356899999999997777899999999999999999999999876533                           1    


Q ss_pred             hhcCCCCCCeEEEEcCCCCCCCCCCCCCCchhhHHHHHHHHHHHcCCcceeEccccHHHHHhCCCCccc
Q 026264          171 VESQLDKDAKIIVACATGGTMKPSQNLPEGQQSRSLIAAYLLVLNGYKNVYHLEGGLYKWFKEELPEVS  239 (241)
Q Consensus       171 ~~~~i~~~~~IVvyC~~G~~~~~~~~~~~~~~~rs~~aa~~L~~~Gy~nV~~l~GG~~~W~~~g~p~~~  239 (241)
                       ...++++++|+|||.+|.              +|..++..|+..||+||++|+||+.+|.+.++|++.
T Consensus        52 -~~~~~~~~~ivv~c~~g~--------------~s~~a~~~L~~~G~~~v~~l~GG~~~w~~~~~~~~~  105 (108)
T PRK00162         52 -MRQADFDTPVMVMCYHGN--------------SSQGAAQYLLQQGFDVVYSIDGGFEAWRRTFPAEVA  105 (108)
T ss_pred             -HHhcCCCCCEEEEeCCCC--------------CHHHHHHHHHHCCchheEEecCCHHHHHhcCCCccC
Confidence             123678899999999998              899999999999999999999999999999999875

>cd01518 RHOD_YceA Member of the Rhodanese Homology Domain superfamily

Probab=99.88  E-value=1.1e-22  Score=154.53  Aligned_cols=99  Identities=30%  Similarity=0.454  Sum_probs=83.1

Q ss_pred             cccHHHHHHHhcCCCeEEEEcCChhhhhhCCCCCCeeechhhHHhhhhhHHHHHHhhhhhccccCCCCCChHHHhhhhhc
Q 026264           94 SVEAKEALRLQKENNFVILDVRPEAEFKEAHPPGAINVQIYRLIKEWTAWDIARRAAFAFFGIFSGTEENPEFLQTGVES  173 (241)
Q Consensus        94 ~Is~~el~~~l~~~~~~lIDvR~~~Ey~~ghIpGAinip~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  173 (241)
                      .|+++++.++++.++.+|||||++.||..||||||+|+|+..+....                        ..+.+  ..
T Consensus         3 ~is~~~l~~~~~~~~~~iiDvR~~~e~~~ghi~gA~~ip~~~~~~~~------------------------~~~~~--~~   56 (101)
T cd01518           3 YLSPAEWNELLEDPEVVLLDVRNDYEYDIGHFKGAVNPDVDTFREFP------------------------FWLDE--NL   56 (101)
T ss_pred             cCCHHHHHHHHcCCCEEEEEcCChhhhhcCEeccccCCCcccHhHhH------------------------HHHHh--hh
Confidence            58999999999877899999999999999999999999998754310                        11111  12


Q ss_pred             CCCCCCeEEEEcCCCCCCCCCCCCCCchhhHHHHHHHHHHHcCCcceeEccccHHHHHh
Q 026264          174 QLDKDAKIIVACATGGTMKPSQNLPEGQQSRSLIAAYLLVLNGYKNVYHLEGGLYKWFK  232 (241)
Q Consensus       174 ~i~~~~~IVvyC~~G~~~~~~~~~~~~~~~rs~~aa~~L~~~Gy~nV~~l~GG~~~W~~  232 (241)
                      ..+++++|||||++|.              ||..++..|..+||+||++|+||+.+|.+
T Consensus        57 ~~~~~~~ivvyC~~G~--------------rs~~a~~~L~~~G~~~v~~l~GG~~~W~~  101 (101)
T cd01518          57 DLLKGKKVLMYCTGGI--------------RCEKASAYLKERGFKNVYQLKGGILKYLE  101 (101)
T ss_pred             hhcCCCEEEEECCCch--------------hHHHHHHHHHHhCCcceeeechhHHHHhC
Confidence            2478899999999998              99999999999999999999999999973

This CD includes Escherichia coli YceA, Bacillus subtilis YbfQ, and similar uncharacterized proteins.

>cd01527 RHOD_YgaP Member of the Rhodanese Homology Domain superfamily

Probab=99.88  E-value=2.7e-22  Score=151.61  Aligned_cols=98  Identities=30%  Similarity=0.413  Sum_probs=86.9

Q ss_pred             ccccHHHHHHHhcCCCeEEEEcCChhhhhhCCCCCCeeechhhHHhhhhhHHHHHHhhhhhccccCCCCCChHHHhhhhh
Q 026264           93 RSVEAKEALRLQKENNFVILDVRPEAEFKEAHPPGAINVQIYRLIKEWTAWDIARRAAFAFFGIFSGTEENPEFLQTGVE  172 (241)
Q Consensus        93 ~~Is~~el~~~l~~~~~~lIDvR~~~Ey~~ghIpGAinip~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  172 (241)
                      ..|+++++.+.++.+ .+|||+|++.||..||||||+|+|+..+...                                .
T Consensus         2 ~~i~~~el~~~~~~~-~~liDvR~~~e~~~~hi~ga~~ip~~~~~~~--------------------------------~   48 (99)
T cd01527           2 TTISPNDACELLAQG-AVLVDIREPDEYLRERIPGARLVPLSQLESE--------------------------------G   48 (99)
T ss_pred             CccCHHHHHHHHHCC-CEEEECCCHHHHHhCcCCCCEECChhHhccc--------------------------------c
Confidence            468999999998875 8999999999999999999999998865431                                1


Q ss_pred             cCCCCCCeEEEEcCCCCCCCCCCCCCCchhhHHHHHHHHHHHcCCcceeEccccHHHHHhCCCCc
Q 026264          173 SQLDKDAKIIVACATGGTMKPSQNLPEGQQSRSLIAAYLLVLNGYKNVYHLEGGLYKWFKEELPE  237 (241)
Q Consensus       173 ~~i~~~~~IVvyC~~G~~~~~~~~~~~~~~~rs~~aa~~L~~~Gy~nV~~l~GG~~~W~~~g~p~  237 (241)
                      ..++++++||+||++|.              ++..++..|.+.||++|++|+||+.+|...|+|+
T Consensus        49 ~~~~~~~~iv~~c~~g~--------------~s~~~~~~L~~~g~~~v~~l~gG~~~W~~~~~~~   99 (99)
T cd01527          49 LPLVGANAIIFHCRSGM--------------RTQQNAERLAAISAGEAYVLEGGLDAWKAAGLPV   99 (99)
T ss_pred             cCCCCCCcEEEEeCCCc--------------hHHHHHHHHHHcCCccEEEeeCCHHHHHHCcCCC
Confidence            23678899999999998              8999999999999999999999999999999985

This CD includes Escherichia coli YgaP, and similar uncharacterized putative rhodanese-related sulfurtransferases.

>cd01519 RHOD_HSP67B2 Member of the Rhodanese Homology Domain superfamily

Probab=99.86  E-value=1.7e-21  Score=148.51  Aligned_cols=104  Identities=32%  Similarity=0.410  Sum_probs=84.0

Q ss_pred             cHHHHHHHhc-CCCeEEEEcCChhhhhhCCCCCCeeechhhHHhhhhhHHHHHHhhhhhccccCCCCCChHHHhhhhhcC
Q 026264           96 EAKEALRLQK-ENNFVILDVRPEAEFKEAHPPGAINVQIYRLIKEWTAWDIARRAAFAFFGIFSGTEENPEFLQTGVESQ  174 (241)
Q Consensus        96 s~~el~~~l~-~~~~~lIDvR~~~Ey~~ghIpGAinip~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  174 (241)
                      +++++.++++ .++.+|||+|++.||..||||||+|+|+..+.+..                   .....+|.+.+....
T Consensus         2 ~~~~~~~~l~~~~~~~iiDvR~~~e~~~ghIpgA~~ip~~~~~~~~-------------------~~~~~~~~~~~~~~~   62 (106)
T cd01519           2 SFEEVKNLPNPHPNKVLIDVREPEELKTGKIPGAINIPLSSLPDAL-------------------ALSEEEFEKKYGFPK   62 (106)
T ss_pred             cHHHHHHhcCCCCCEEEEECCCHHHHhcCcCCCcEEechHHhhhhh-------------------CCCHHHHHHHhcccC
Confidence            5678888887 66799999999999999999999999998764310                   011224444323345


Q ss_pred             CCCCCeEEEEcCCCCCCCCCCCCCCchhhHHHHHHHHHHHcCCcceeEccccHHHHHh
Q 026264          175 LDKDAKIIVACATGGTMKPSQNLPEGQQSRSLIAAYLLVLNGYKNVYHLEGGLYKWFK  232 (241)
Q Consensus       175 i~~~~~IVvyC~~G~~~~~~~~~~~~~~~rs~~aa~~L~~~Gy~nV~~l~GG~~~W~~  232 (241)
                      ++++++||+||++|.              +|..+++.|..+||+||++|+||+.+|.+
T Consensus        63 ~~~~~~ivv~c~~g~--------------~s~~~~~~l~~~G~~~v~~~~Gg~~~W~~  106 (106)
T cd01519          63 PSKDKELIFYCKAGV--------------RSKAAAELARSLGYENVGNYPGSWLDWAA  106 (106)
T ss_pred             CCCCCeEEEECCCcH--------------HHHHHHHHHHHcCCccceecCCcHHHHcC
Confidence            678999999999987              99999999999999999999999999963

This CD includes the heat shock protein 67B2 of Drosophila melanogaster and other similar proteins, many of which are uncharacterized.

>cd01521 RHOD_PspE2 Member of the Rhodanese Homology Domain superfamily

Probab=99.85  E-value=7.3e-21  Score=147.07  Aligned_cols=101  Identities=28%  Similarity=0.455  Sum_probs=86.4

Q ss_pred             ccccHHHHHHHhcCC--CeEEEEcCChhhhhhCCCCCCeeechhhHHhhhhhHHHHHHhhhhhccccCCCCCChHHHhhh
Q 026264           93 RSVEAKEALRLQKEN--NFVILDVRPEAEFKEAHPPGAINVQIYRLIKEWTAWDIARRAAFAFFGIFSGTEENPEFLQTG  170 (241)
Q Consensus        93 ~~Is~~el~~~l~~~--~~~lIDvR~~~Ey~~ghIpGAinip~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  170 (241)
                      ..|+++++.+++..+  +.+|||||++.||..||||||+|+|...+...                               
T Consensus         8 ~~~s~~el~~~l~~~~~~~~iiDvR~~~e~~~ghIpgA~~ip~~~l~~~-------------------------------   56 (110)
T cd01521           8 FETDCWDVAIALKNGKPDFVLVDVRSAEAYARGHVPGAINLPHREICEN-------------------------------   56 (110)
T ss_pred             eecCHHHHHHHHHcCCCCEEEEECCCHHHHhcCCCCCCEeCCHHHhhhH-------------------------------
Confidence            469999999998753  58999999999999999999999998775421                               


Q ss_pred             hhcCCCCCCeEEEEcCCCCCCCCCCCCCCchhhHHHHHHHHHHHcCCcceeEccccHHHHHhCCCCc
Q 026264          171 VESQLDKDAKIIVACATGGTMKPSQNLPEGQQSRSLIAAYLLVLNGYKNVYHLEGGLYKWFKEELPE  237 (241)
Q Consensus       171 ~~~~i~~~~~IVvyC~~G~~~~~~~~~~~~~~~rs~~aa~~L~~~Gy~nV~~l~GG~~~W~~~g~p~  237 (241)
                      ....++++++|||||++|.+            .++..+++.|+..||+ |++|+||+.+|..+|+|+
T Consensus        57 ~~~~i~~~~~vvvyc~~g~~------------~~s~~~a~~l~~~G~~-v~~l~GG~~~W~~~g~~~  110 (110)
T cd01521          57 ATAKLDKEKLFVVYCDGPGC------------NGATKAALKLAELGFP-VKEMIGGLDWWKREGYAT  110 (110)
T ss_pred             hhhcCCCCCeEEEEECCCCC------------chHHHHHHHHHHcCCe-EEEecCCHHHHHHCCCCC
Confidence            12457889999999998742            2799999999999995 999999999999999985

This CD includes the putative rhodanese-like protein, Psp2, of Yersinia pestis biovar Medievalis and other similar uncharacterized proteins.

>cd01534 4RHOD_Repeat_3 Member of the Rhodanese Homology Domain superfamily, repeat 3

Probab=99.85  E-value=6.2e-21  Score=143.51  Aligned_cols=92  Identities=30%  Similarity=0.395  Sum_probs=76.7

Q ss_pred             ccHHHHHHHhcCC--CeEEEEcCChhhhhhCCCCCCeeechhhHHhhhhhHHHHHHhhhhhccccCCCCCChHHHhhhhh
Q 026264           95 VEAKEALRLQKEN--NFVILDVRPEAEFKEAHPPGAINVQIYRLIKEWTAWDIARRAAFAFFGIFSGTEENPEFLQTGVE  172 (241)
Q Consensus        95 Is~~el~~~l~~~--~~~lIDvR~~~Ey~~ghIpGAinip~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  172 (241)
                      |+++++.++++++  +++|||||++.||..||||||+|+|+..+....                           ..   
T Consensus         1 is~~~l~~~~~~~~~~~~liDvR~~~e~~~ghipga~~ip~~~l~~~~---------------------------~~---   50 (95)
T cd01534           1 IGAAELARWAAEGDRTVYRFDVRTPEEYEAGHLPGFRHTPGGQLVQET---------------------------DH---   50 (95)
T ss_pred             CCHHHHHHHHHcCCCCeEEEECCCHHHHHhCCCCCcEeCCHHHHHHHH---------------------------HH---
Confidence            5788999988764  578999999999999999999999987654311                           00   


Q ss_pred             cCCCCCCeEEEEcCCCCCCCCCCCCCCchhhHHHHHHHHHHHcCCcceeEccccHHHHH
Q 026264          173 SQLDKDAKIIVACATGGTMKPSQNLPEGQQSRSLIAAYLLVLNGYKNVYHLEGGLYKWF  231 (241)
Q Consensus       173 ~~i~~~~~IVvyC~~G~~~~~~~~~~~~~~~rs~~aa~~L~~~Gy~nV~~l~GG~~~W~  231 (241)
                      ....++++||+||.+|.              ||..++..|+..||+ |++|+||+.+|.
T Consensus        51 ~~~~~~~~iv~~c~~G~--------------rs~~aa~~L~~~G~~-v~~l~GG~~~W~   94 (95)
T cd01534          51 FAPVRGARIVLADDDGV--------------RADMTASWLAQMGWE-VYVLEGGLAAAL   94 (95)
T ss_pred             hcccCCCeEEEECCCCC--------------hHHHHHHHHHHcCCE-EEEecCcHHHhc
Confidence            01124789999999998              999999999999998 999999999996

This CD includes putative rhodanese-related sulfurtransferases which contain 4 copies of the Rhodanese Homology Domain. This CD aligns the 3rd repeat which does not contain the putative catalytic Cys residue.

>TIGR03865 PQQ_CXXCW PQQ-dependent catabolism-associated CXXCW motif protein

Probab=99.85  E-value=5.9e-21  Score=158.14  Aligned_cols=116  Identities=23%  Similarity=0.282  Sum_probs=88.1

Q ss_pred             hccccccHHHHHHHhcCCCeEEEEcCChh----hhhhC---------CCCCCeeechhhHHhhhhhHHHHHHhhhhhccc
Q 026264           90 KRVRSVEAKEALRLQKENNFVILDVRPEA----EFKEA---------HPPGAINVQIYRLIKEWTAWDIARRAAFAFFGI  156 (241)
Q Consensus        90 ~~~~~Is~~el~~~l~~~~~~lIDvR~~~----Ey~~g---------hIpGAinip~~~l~~~~~~~~~~~~~~~~~~~~  156 (241)
                      ..+..|+++|+.+++++++.+|||||++.    ||..|         |||||+|+|+.....-                 
T Consensus        33 ~~~~~vs~~el~~~l~~~~~~lIDVR~~~~~~~e~~~G~~~~~~~~~HIPGAv~ip~~~~~~l-----------------   95 (162)
T TIGR03865        33 KGARVLDTEAAQALLARGPVALIDVYPRPPKPKNLLEGTVWRDEPRLNIPGSLWLPNTGYGNL-----------------   95 (162)
T ss_pred             CCccccCHHHHHHHHhCCCcEEEECCCCccccccccccceeccccCCCCCCcEEecccCCCCC-----------------
Confidence            44568999999999988889999999865    46544         9999999996422110                 


Q ss_pred             cCCCCCChHHHhhhhhc-CCCCCCeEEEEcCCCCCCCCCCCCCCchhhHHHHHHHHHHHcCCcceeEccccHHHHHhCCC
Q 026264          157 FSGTEENPEFLQTGVES-QLDKDAKIIVACATGGTMKPSQNLPEGQQSRSLIAAYLLVLNGYKNVYHLEGGLYKWFKEEL  235 (241)
Q Consensus       157 ~~~~~~~~~~~~~~~~~-~i~~~~~IVvyC~~G~~~~~~~~~~~~~~~rs~~aa~~L~~~Gy~nV~~l~GG~~~W~~~g~  235 (241)
                       . ....+.|.+.+... ..+++++||+||++|.             .+|..+++.|+.+||+||++|+||+.+|..+|+
T Consensus        96 -~-~~~~~~~~~~l~~~~~~~~d~~IVvYC~~G~-------------~~S~~aa~~L~~~G~~~V~~l~GG~~aW~~aG~  160 (162)
T TIGR03865        96 -A-PAWQAYFRRGLERATGGDKDRPLVFYCLADC-------------WMSWNAAKRALAYGYSNVYWYPDGTDGWQAAGL  160 (162)
T ss_pred             -C-CchhHHHHHHHHHhcCCCCCCEEEEEECCCC-------------HHHHHHHHHHHhcCCcceEEecCCHHHHHHcCC
Confidence             0 00111233331122 2379999999999986             389999999999999999999999999999999


Q ss_pred             Cc
Q 026264          236 PE  237 (241)
Q Consensus       236 p~  237 (241)
                      |+
T Consensus       161 Pv  162 (162)
T TIGR03865       161 PL  162 (162)
T ss_pred             CC
Confidence            85

Members of this protein family have a CXXXCW motif, consistent with a possible role in redox cofactor binding. This protein family shows strong relationships by phylogenetic profiling and conserved gene neighborhoods with a transport system for alcohols metabolized by PQQ-dependent enzymes.

>cd01523 RHOD_Lact_B Member of the Rhodanese Homology Domain superfamily

Probab=99.85  E-value=4.9e-21  Score=145.12  Aligned_cols=98  Identities=28%  Similarity=0.446  Sum_probs=80.9

Q ss_pred             ccHHHHHHHhcCC-CeEEEEcCChhhhhhCCCCCCeeechhhHHhhhhhHHHHHHhhhhhccccCCCCCChHHHhhhhhc
Q 026264           95 VEAKEALRLQKEN-NFVILDVRPEAEFKEAHPPGAINVQIYRLIKEWTAWDIARRAAFAFFGIFSGTEENPEFLQTGVES  173 (241)
Q Consensus        95 Is~~el~~~l~~~-~~~lIDvR~~~Ey~~ghIpGAinip~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  173 (241)
                      |+++++.++++++ +.+|||||++.||..||||||+|+|+..+...+.                       +..+. ...
T Consensus         1 is~~el~~~l~~~~~~~liDvR~~~e~~~ghi~ga~~ip~~~~~~~~~-----------------------~~~~~-~~~   56 (100)
T cd01523           1 LDPEDLYARLLAGQPLFILDVRNESDYERWKIDGENNTPYFDPYFDFL-----------------------EIEED-ILD   56 (100)
T ss_pred             CCHHHHHHHHHcCCCcEEEEeCCHHHHhhcccCCCcccccccchHHHH-----------------------HhhHH-HHh
Confidence            5788999988764 6899999999999999999999999987654210                       00011 224


Q ss_pred             CCCCCCeEEEEcCCCCCCCCCCCCCCchhhHHHHHHHHHHHcCCcceeEccccHHHHH
Q 026264          174 QLDKDAKIIVACATGGTMKPSQNLPEGQQSRSLIAAYLLVLNGYKNVYHLEGGLYKWF  231 (241)
Q Consensus       174 ~i~~~~~IVvyC~~G~~~~~~~~~~~~~~~rs~~aa~~L~~~Gy~nV~~l~GG~~~W~  231 (241)
                      .++++++|||||.+|.              ||..++..|+..||+ +++|.||+.+|.
T Consensus        57 ~~~~~~~ivv~C~~G~--------------rs~~aa~~L~~~G~~-~~~l~GG~~~W~   99 (100)
T cd01523          57 QLPDDQEVTVICAKEG--------------SSQFVAELLAERGYD-VDYLAGGMKAWS   99 (100)
T ss_pred             hCCCCCeEEEEcCCCC--------------cHHHHHHHHHHcCce-eEEeCCcHHhhc
Confidence            4688999999999998              999999999999998 999999999996

This CD includes predicted proteins with rhodanese-like domains found N-terminal of the metallo-beta-lactamase domain.

>cd01447 Polysulfide_ST Polysulfide-sulfurtransferase - Rhodanese Homology Domain

Probab=99.85  E-value=6.9e-21  Score=144.07  Aligned_cols=102  Identities=25%  Similarity=0.376  Sum_probs=82.0

Q ss_pred             ccHHHHHHHhcCCCeEEEEcCChhhh-hhCCCCCCeeechhhHHhhhhhHHHHHHhhhhhccccCCCCCChHHHhhhhhc
Q 026264           95 VEAKEALRLQKENNFVILDVRPEAEF-KEAHPPGAINVQIYRLIKEWTAWDIARRAAFAFFGIFSGTEENPEFLQTGVES  173 (241)
Q Consensus        95 Is~~el~~~l~~~~~~lIDvR~~~Ey-~~ghIpGAinip~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  173 (241)
                      |+++++.+++++++.+|||+|++.+| ..||||||+|+|+..+.... .+                   ...+    ...
T Consensus         1 is~~el~~~~~~~~~~iiDvR~~~~~~~~ghIpga~~ip~~~~~~~~-~~-------------------~~~~----~~~   56 (103)
T cd01447           1 LSPEDARALLGSPGVLLVDVRDPRELERTGMIPGAFHAPRGMLEFWA-DP-------------------DSPY----HKP   56 (103)
T ss_pred             CCHHHHHHHHhCCCeEEEECCCHHHHHhcCCCCCcEEcccchhhhhc-Cc-------------------cccc----ccc
Confidence            57889999888778999999999998 57999999999986643210 00                   0000    123


Q ss_pred             CCCCCCeEEEEcCCCCCCCCCCCCCCchhhHHHHHHHHHHHcCCcceeEccccHHHHHhCC
Q 026264          174 QLDKDAKIIVACATGGTMKPSQNLPEGQQSRSLIAAYLLVLNGYKNVYHLEGGLYKWFKEE  234 (241)
Q Consensus       174 ~i~~~~~IVvyC~~G~~~~~~~~~~~~~~~rs~~aa~~L~~~Gy~nV~~l~GG~~~W~~~g  234 (241)
                      .++++++|||||++|.              +|..+++.|..+||++|++|+||+.+|..+|
T Consensus        57 ~~~~~~~ivv~c~~g~--------------~s~~~~~~l~~~G~~~v~~l~Gg~~~w~~~g  103 (103)
T cd01447          57 AFAEDKPFVFYCASGW--------------RSALAGKTLQDMGLKPVYNIEGGFKDWKEAG  103 (103)
T ss_pred             CCCCCCeEEEEcCCCC--------------cHHHHHHHHHHcChHHhEeecCcHHHHhhcC
Confidence            5788999999999987              8999999999999999999999999998765

This domain is believed to serve as a polysulfide binding and transferase domain in anaerobic gram-negative bacteria, functioning in oxidative phosphorylation with polysulfide-sulfur as a terminal electron acceptor. The active site contains the same conserved cysteine that is the catalytic residue in other Rhodanese Homology Domain proteins.

>cd01520 RHOD_YbbB Member of the Rhodanese Homology Domain superfamily

Probab=99.84  E-value=1.5e-20  Score=149.33  Aligned_cols=121  Identities=31%  Similarity=0.417  Sum_probs=83.3

Q ss_pred             ccHHHHHHHhcCCCeEEEEcCChhhhhhCCCCCCeeechhhHHhhhhhHHHHHH----hhhhhccccCCCCCChHHHhhh
Q 026264           95 VEAKEALRLQKENNFVILDVRPEAEFKEAHPPGAINVQIYRLIKEWTAWDIARR----AAFAFFGIFSGTEENPEFLQTG  170 (241)
Q Consensus        95 Is~~el~~~l~~~~~~lIDvR~~~Ey~~ghIpGAinip~~~l~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~  170 (241)
                      |+++|+.++++ ++.+|||||++.||..||||||+|||+..+..........+.    .+...+..+. ..+.+++++..
T Consensus         1 ~s~~el~~~l~-~~~~iiDvR~~~e~~~ghIpgAinip~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~   78 (128)
T cd01520           1 ITAEDLLALRK-ADGPLIDVRSPKEFFEGHLPGAINLPLLDDEERALVGTLYKQQGREAAIELGLELV-SGKLKRILNEA   78 (128)
T ss_pred             CCHHHHHHHHh-cCCEEEECCCHHHhccCcCCCcEEccCCChhHHHHhhhheeccCHHHHHHHHHHHH-hhhHHHHHHHH
Confidence            67899999887 578999999999999999999999999654321100000000    0000000000 01223444431


Q ss_pred             hhcCCCCCCeEEEEcC-CCCCCCCCCCCCCchhhHHHHHHHHHHHcCCcceeEccccHHHHHh
Q 026264          171 VESQLDKDAKIIVACA-TGGTMKPSQNLPEGQQSRSLIAAYLLVLNGYKNVYHLEGGLYKWFK  232 (241)
Q Consensus       171 ~~~~i~~~~~IVvyC~-~G~~~~~~~~~~~~~~~rs~~aa~~L~~~Gy~nV~~l~GG~~~W~~  232 (241)
                      ...+++++++|||||+ +|.              ||.++++.|+.+|| +|++|+||+.+|..
T Consensus        79 ~~~~i~~~~~vvvyC~~~G~--------------rs~~a~~~L~~~G~-~v~~L~GG~~aw~~  126 (128)
T cd01520          79 WEARLERDPKLLIYCARGGM--------------RSQSLAWLLESLGI-DVPLLEGGYKAYRK  126 (128)
T ss_pred             HHhccCCCCeEEEEeCCCCc--------------cHHHHHHHHHHcCC-ceeEeCCcHHHHHh
Confidence            2247899999999997 455              99999999999999 69999999999975

This CD includes several putative ATP /GTP binding proteins including E. coli YbbB.

>cd01444 GlpE_ST GlpE sulfurtransferase (ST) and homologs are members of the Rhodanese Homology Domain superfamily

Probab=99.84  E-value=1.2e-20  Score=141.22  Aligned_cols=91  Identities=32%  Similarity=0.473  Sum_probs=80.5

Q ss_pred             ccHHHHHHHhcC-CCeEEEEcCChhhhhh--CCCCCCeeechhhHHhhhhhHHHHHHhhhhhccccCCCCCChHHHhhhh
Q 026264           95 VEAKEALRLQKE-NNFVILDVRPEAEFKE--AHPPGAINVQIYRLIKEWTAWDIARRAAFAFFGIFSGTEENPEFLQTGV  171 (241)
Q Consensus        95 Is~~el~~~l~~-~~~~lIDvR~~~Ey~~--ghIpGAinip~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  171 (241)
                      |+++++.+.++. .+++|||||++.||..  ||||||+|+|+..+..                                .
T Consensus         2 i~~~~~~~~~~~~~~~~ivDvR~~~e~~~~~~hi~ga~~ip~~~~~~--------------------------------~   49 (96)
T cd01444           2 ISVDELAELLAAGEAPVLLDVRDPASYAALPDHIPGAIHLDEDSLDD--------------------------------W   49 (96)
T ss_pred             cCHHHHHHHHhcCCCcEEEECCCHHHHhcccCCCCCCeeCCHHHHHH--------------------------------H
Confidence            678899888876 4699999999999999  9999999999986643                                1


Q ss_pred             hcCCCCCCeEEEEcCCCCCCCCCCCCCCchhhHHHHHHHHHHHcCCcceeEccccHHHHH
Q 026264          172 ESQLDKDAKIIVACATGGTMKPSQNLPEGQQSRSLIAAYLLVLNGYKNVYHLEGGLYKWF  231 (241)
Q Consensus       172 ~~~i~~~~~IVvyC~~G~~~~~~~~~~~~~~~rs~~aa~~L~~~Gy~nV~~l~GG~~~W~  231 (241)
                      ...++++++|||||.+|.              +|..++..|+..||++|++|+||+.+|.
T Consensus        50 ~~~~~~~~~ivv~c~~g~--------------~s~~a~~~l~~~G~~~v~~l~gG~~~w~   95 (96)
T cd01444          50 LGDLDRDRPVVVYCYHGN--------------SSAQLAQALREAGFTDVRSLAGGFEAWR   95 (96)
T ss_pred             HhhcCCCCCEEEEeCCCC--------------hHHHHHHHHHHcCCceEEEcCCCHHHhc
Confidence            134678999999999887              9999999999999999999999999996

Unlike other rhodanese sulfurtransferases, GlpE is a single domain protein but indications are that it functions as a dimer. The active site contains a catalytically active cysteine.

>cd01448 TST_Repeat_1 Thiosulfate sulfurtransferase (TST), N-terminal, inactive domain

Probab=99.84  E-value=1.9e-20  Score=146.61  Aligned_cols=114  Identities=25%  Similarity=0.271  Sum_probs=88.9

Q ss_pred             ccHHHHHHHhcCCCeEEEEcCCh-------hhhhhCCCCCCeeechhhHHhhhhhHHHHHHhhhhhccccCCCCCChHHH
Q 026264           95 VEAKEALRLQKENNFVILDVRPE-------AEFKEAHPPGAINVQIYRLIKEWTAWDIARRAAFAFFGIFSGTEENPEFL  167 (241)
Q Consensus        95 Is~~el~~~l~~~~~~lIDvR~~-------~Ey~~ghIpGAinip~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  167 (241)
                      |+++++.+++.+++.+|||+|++       .+|..||||||+|+|+..+.....          ...|.+.   +..+|.
T Consensus         2 i~~~~l~~~l~~~~~~ivDvR~~~~~~~~~~~~~~ghI~ga~~i~~~~~~~~~~----------~~~~~~~---~~~~~~   68 (122)
T cd01448           2 VSPDWLAEHLDDPDVRILDARWYLPDRDGRKEYLEGHIPGAVFFDLDEDLDDKS----------PGPHMLP---SPEEFA   68 (122)
T ss_pred             cCHHHHHHHhCCCCeEEEEeecCCCCCchhhHHhhCCCCCCEEcChhhccccCC----------CCCCCCC---CHHHHH
Confidence            78899999998778999999999       999999999999999987654210          0111111   122333


Q ss_pred             hhhhhcCCCCCCeEEEEcCCCCCCCCCCCCCCchhhHHHHHHHHHHHcCCcceeEccccHHHHHhCC
Q 026264          168 QTGVESQLDKDAKIIVACATGGTMKPSQNLPEGQQSRSLIAAYLLVLNGYKNVYHLEGGLYKWFKEE  234 (241)
Q Consensus       168 ~~~~~~~i~~~~~IVvyC~~G~~~~~~~~~~~~~~~rs~~aa~~L~~~Gy~nV~~l~GG~~~W~~~g  234 (241)
                      +.....+++++++|||||++|+             .+|..+++.|+.+||++|++|+||+.+|..+|
T Consensus        69 ~~~~~~~~~~~~~vv~~c~~g~-------------~~a~~~~~~l~~~G~~~v~~l~GG~~~W~~~g  122 (122)
T cd01448          69 ELLGSLGISNDDTVVVYDDGGG-------------FFAARAWWTLRYFGHENVRVLDGGLQAWKAEG  122 (122)
T ss_pred             HHHHHcCCCCCCEEEEECCCCC-------------ccHHHHHHHHHHcCCCCEEEecCCHHHHHhCc
Confidence            3323357889999999999963             18999999999999999999999999999875

TST contains 2 copies of the Rhodanese Homology Domain; this is the 1st repeat, which does not contain the catalytically active Cys residue. The role of the 1st repeat is uncertain, but it is believed to be involved in protein interaction.

>cd01526 RHOD_ThiF Member of the Rhodanese Homology Domain superfamily

Probab=99.84  E-value=1.2e-20  Score=148.62  Aligned_cols=110  Identities=29%  Similarity=0.425  Sum_probs=88.8

Q ss_pred             cccccHHHHHHHhcC-CCeEEEEcCChhhhhhCCCCCCeeechhhHHhhhhhHHHHHHhhhhhccccCCCCCChHHHhhh
Q 026264           92 VRSVEAKEALRLQKE-NNFVILDVRPEAEFKEAHPPGAINVQIYRLIKEWTAWDIARRAAFAFFGIFSGTEENPEFLQTG  170 (241)
Q Consensus        92 ~~~Is~~el~~~l~~-~~~~lIDvR~~~Ey~~ghIpGAinip~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  170 (241)
                      +..|+++++.+++++ .+++|||||++.||..||||||+|+|+..+.+....                    .+.. .. 
T Consensus         7 ~~~is~~el~~~~~~~~~~~ivDvR~~~e~~~~hIpgai~ip~~~~~~~~~~--------------------~~~~-~~-   64 (122)
T cd01526           7 EERVSVKDYKNILQAGKKHVLLDVRPKVHFEICRLPEAINIPLSELLSKAAE--------------------LKSL-QE-   64 (122)
T ss_pred             ccccCHHHHHHHHhCCCCeEEEEcCCHHHhhcccCCCCeEccHHHHhhhhhh--------------------hhhh-hh-
Confidence            457999999998876 578999999999999999999999999886542100                    0000 00 


Q ss_pred             hhcCCCCCCeEEEEcCCCCCCCCCCCCCCchhhHHHHHHHHHHHcCC-cceeEccccHHHHHhCCCCc
Q 026264          171 VESQLDKDAKIIVACATGGTMKPSQNLPEGQQSRSLIAAYLLVLNGY-KNVYHLEGGLYKWFKEELPE  237 (241)
Q Consensus       171 ~~~~i~~~~~IVvyC~~G~~~~~~~~~~~~~~~rs~~aa~~L~~~Gy-~nV~~l~GG~~~W~~~g~p~  237 (241)
                      ....++++++||+||++|.              ||..++..|+..|| ++|++|+||+.+|.....+.
T Consensus        65 ~~~~~~~~~~ivv~C~~G~--------------rs~~aa~~L~~~G~~~~v~~l~GG~~~W~~~~~~~  118 (122)
T cd01526          65 LPLDNDKDSPIYVVCRRGN--------------DSQTAVRKLKELGLERFVRDIIGGLKAWADKVDPT  118 (122)
T ss_pred             cccccCCCCcEEEECCCCC--------------cHHHHHHHHHHcCCccceeeecchHHHHHHHhCcc
Confidence            2245688999999999998              99999999999999 69999999999999876553

This CD includes several putative molybdopterin synthase sulfurylases including the molybdenum cofactor biosynthetic protein (CnxF) of Aspergillus nidulans and the molybdenum cofactor synthesis protein 3 (MOCS3) of Homo sapiens. These rhodanese-like domains are found C-terminal of the ThiF and MoeZ_MoeB domains.

>cd01528 RHOD_2 Member of the Rhodanese Homology Domain superfamily, subgroup 2

Probab=99.84  E-value=1.4e-20  Score=143.00  Aligned_cols=96  Identities=29%  Similarity=0.548  Sum_probs=81.0

Q ss_pred             ccHHHHHHHhcCC--CeEEEEcCChhhhhhCCCCCCeeechhhHHhhhhhHHHHHHhhhhhccccCCCCCChHHHhhhhh
Q 026264           95 VEAKEALRLQKEN--NFVILDVRPEAEFKEAHPPGAINVQIYRLIKEWTAWDIARRAAFAFFGIFSGTEENPEFLQTGVE  172 (241)
Q Consensus        95 Is~~el~~~l~~~--~~~lIDvR~~~Ey~~ghIpGAinip~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  172 (241)
                      |+++++.++++.+  +.+|||+|++.||..+|||||+|+|+..+.+.                           ++. . 
T Consensus         2 i~~~~l~~~~~~~~~~~~iiDvR~~~e~~~~hI~ga~~ip~~~~~~~---------------------------~~~-~-   52 (101)
T cd01528           2 ISVAELAEWLADEREEPVLIDVREPEELEIAFLPGFLHLPMSEIPER---------------------------SKE-L-   52 (101)
T ss_pred             CCHHHHHHHHhcCCCCCEEEECCCHHHHhcCcCCCCEecCHHHHHHH---------------------------HHH-h-
Confidence            7889999998865  58999999999999999999999999765431                           111 1 


Q ss_pred             cCCCCCCeEEEEcCCCCCCCCCCCCCCchhhHHHHHHHHHHHcCCcceeEccccHHHHHhC
Q 026264          173 SQLDKDAKIIVACATGGTMKPSQNLPEGQQSRSLIAAYLLVLNGYKNVYHLEGGLYKWFKE  233 (241)
Q Consensus       173 ~~i~~~~~IVvyC~~G~~~~~~~~~~~~~~~rs~~aa~~L~~~Gy~nV~~l~GG~~~W~~~  233 (241)
                      ...+++++||+||++|.              ||..++..|.+.||++|++|+||+.+|...
T Consensus        53 ~~~~~~~~vv~~c~~g~--------------rs~~~~~~l~~~G~~~v~~l~GG~~~w~~~   99 (101)
T cd01528          53 DSDNPDKDIVVLCHHGG--------------RSMQVAQWLLRQGFENVYNLQGGIDAWSLE   99 (101)
T ss_pred             cccCCCCeEEEEeCCCc--------------hHHHHHHHHHHcCCccEEEecCCHHHHhhh
Confidence            11256899999999987              999999999999999999999999999754

Subgroup 2 includes uncharacterized putative rhodanese-related domains.

>cd01524 RHOD_Pyr_redox Member of the Rhodanese Homology Domain superfamily

Probab=99.83  E-value=2.2e-20  Score=139.13  Aligned_cols=89  Identities=37%  Similarity=0.569  Sum_probs=77.3

Q ss_pred             ccHHHHHHHhcCCCeEEEEcCChhhhhhCCCCCCeeechhhHHhhhhhHHHHHHhhhhhccccCCCCCChHHHhhhhhcC
Q 026264           95 VEAKEALRLQKENNFVILDVRPEAEFKEAHPPGAINVQIYRLIKEWTAWDIARRAAFAFFGIFSGTEENPEFLQTGVESQ  174 (241)
Q Consensus        95 Is~~el~~~l~~~~~~lIDvR~~~Ey~~ghIpGAinip~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  174 (241)
                      ++++++.+++ .++.+|||+|++.+|..||||||+|+|+..+..                                ....
T Consensus         1 ~~~~e~~~~~-~~~~~iiD~R~~~~~~~~hipgA~~ip~~~~~~--------------------------------~~~~   47 (90)
T cd01524           1 VQWHELDNYR-ADGVTLIDVRTPQEFEKGHIKGAINIPLDELRD--------------------------------RLNE   47 (90)
T ss_pred             CCHHHHHHHh-cCCCEEEECCCHHHHhcCCCCCCEeCCHHHHHH--------------------------------HHHh
Confidence            4678888888 457889999999999999999999999876543                                1123


Q ss_pred             CCCCCeEEEEcCCCCCCCCCCCCCCchhhHHHHHHHHHHHcCCcceeEccccHHHHH
Q 026264          175 LDKDAKIIVACATGGTMKPSQNLPEGQQSRSLIAAYLLVLNGYKNVYHLEGGLYKWF  231 (241)
Q Consensus       175 i~~~~~IVvyC~~G~~~~~~~~~~~~~~~rs~~aa~~L~~~Gy~nV~~l~GG~~~W~  231 (241)
                      ++++++||+||++|.              ++..++..|++.|| +|++|+||+.+|+
T Consensus        48 ~~~~~~vvl~c~~g~--------------~a~~~a~~L~~~G~-~v~~l~GG~~~w~   89 (90)
T cd01524          48 LPKDKEIIVYCAVGL--------------RGYIAARILTQNGF-KVKNLDGGYKTYS   89 (90)
T ss_pred             cCCCCcEEEEcCCCh--------------hHHHHHHHHHHCCC-CEEEecCCHHHhc
Confidence            677889999999987              89999999999999 8999999999996

Included in this CD are the Lactococcus lactis NADH oxidase, Bacillus cereus NADH dehydrogenase, and Bacteroides thetaiotaomicron pyridine nucleotide-disulphide oxidoreductase, and similar rhodanese-like domains found C-terminal of the pyridine nucleotide-disulphide oxidoreductase (Pyr-redox) domain and the Pyr-redox dimerization domain.

>smart00450 RHOD Rhodanese Homology Domain

Probab=99.83  E-value=3.2e-20  Score=137.40  Aligned_cols=98  Identities=38%  Similarity=0.627  Sum_probs=79.3

Q ss_pred             CCeEEEEcCChhhhhhCCCCCCeeechhhHHhhhhhHHHHHHhhhhhccccCCCCCChHHHhhhhhcCCCCCCeEEEEcC
Q 026264          107 NNFVILDVRPEAEFKEAHPPGAINVQIYRLIKEWTAWDIARRAAFAFFGIFSGTEENPEFLQTGVESQLDKDAKIIVACA  186 (241)
Q Consensus       107 ~~~~lIDvR~~~Ey~~ghIpGAinip~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~IVvyC~  186 (241)
                      ++++|||+|++.||..||||||+|+|+..+.......                  ....+.+......++++++|||||.
T Consensus         3 ~~~~ivDvR~~~e~~~~hi~ga~~i~~~~~~~~~~~~------------------~~~~~~~~~~~~~~~~~~~iv~~c~   64 (100)
T smart00450        3 EKVVLLDVRSPEEYEGGHIPGAVNIPLSELLDRRGEL------------------DILEFEELLKRLGLDKDKPVVVYCR   64 (100)
T ss_pred             CCEEEEECCCHHHhccCCCCCceeCCHHHhccCCCCc------------------CHHHHHHHHHHcCCCCCCeEEEEeC
Confidence            4789999999999999999999999998765421100                  0112222224467889999999998


Q ss_pred             CCCCCCCCCCCCCchhhHHHHHHHHHHHcCCcceeEccccHHHHHhCCCC
Q 026264          187 TGGTMKPSQNLPEGQQSRSLIAAYLLVLNGYKNVYHLEGGLYKWFKEELP  236 (241)
Q Consensus       187 ~G~~~~~~~~~~~~~~~rs~~aa~~L~~~Gy~nV~~l~GG~~~W~~~g~p  236 (241)
                      +|.              ++..+++.|+++||++|++|+||+.+|...|.|
T Consensus        65 ~g~--------------~a~~~~~~l~~~G~~~v~~l~GG~~~w~~~~~~  100 (100)
T smart00450       65 SGN--------------RSAKAAWLLRELGFKNVYLLDGGYKEWSAAGPP  100 (100)
T ss_pred             CCc--------------HHHHHHHHHHHcCCCceEEecCCHHHHHhcCCC
Confidence            887              999999999999999999999999999998865

An alpha beta fold found duplicated in the Rhodanese protein. The the Cysteine containing enzymatically active version of the domain is also found in the CDC25 class of protein phosphatases and a variety of proteins such as sulfide dehydrogenases and stress proteins such as Senesence specific protein 1 in plants, PspE and GlpE in bacteria and cyanide and arsenate resistance proteins. Inactive versions with a loss of the cysteine are also seen in Dual specificity phosphatases, ubiquitin hydrolases from yeast and in sulfuryltransferases. These are likely to play a role in protein interactions.

>cd01525 RHOD_Kc Member of the Rhodanese Homology Domain superfamily

Probab=99.83  E-value=2.4e-20  Score=142.07  Aligned_cols=102  Identities=20%  Similarity=0.332  Sum_probs=78.6

Q ss_pred             ccHHHHHHHhcCC--CeEEEEcCChhhhhhCCCCCCeeechhhHHhhhhhHHHHHHhhhhhccccCCCCCChHHHhhhhh
Q 026264           95 VEAKEALRLQKEN--NFVILDVRPEAEFKEAHPPGAINVQIYRLIKEWTAWDIARRAAFAFFGIFSGTEENPEFLQTGVE  172 (241)
Q Consensus        95 Is~~el~~~l~~~--~~~lIDvR~~~Ey~~ghIpGAinip~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  172 (241)
                      |+++++.++++++  +++|||||++.||..||||||+|+|+..+......              +........+.     
T Consensus         1 is~~~l~~~l~~~~~~~~liDvR~~~e~~~ghIpgA~~ip~~~~~~~~~~--------------~~~~~~~~~~~-----   61 (105)
T cd01525           1 ISVYDVIRLLDNSPAKLAAVDIRSSPDFRRGHIEGSINIPFSSVFLKEGE--------------LEQLPTVPRLE-----   61 (105)
T ss_pred             CCHHHHHHHHhCCCCCeEEEECCCHHHHhCCccCCCEeCCHHHhcccccc--------------cccccchHHHH-----
Confidence            6789999998763  68999999999999999999999999876421000              00000001111     


Q ss_pred             cCCCCCCeEEEEcCCCCCCCCCCCCCCchhhHHHHHHHHHHHcCCcceeEccccHHHHH
Q 026264          173 SQLDKDAKIIVACATGGTMKPSQNLPEGQQSRSLIAAYLLVLNGYKNVYHLEGGLYKWF  231 (241)
Q Consensus       173 ~~i~~~~~IVvyC~~G~~~~~~~~~~~~~~~rs~~aa~~L~~~Gy~nV~~l~GG~~~W~  231 (241)
                        ..++++||+||.+|.              +|..+++.|+..||++|++|+||+.+|+
T Consensus        62 --~~~~~~vv~~c~~g~--------------~s~~~a~~L~~~G~~~v~~l~GG~~a~~  104 (105)
T cd01525          62 --NYKGKIIVIVSHSHK--------------HAALFAAFLVKCGVPRVCILDGGINALK  104 (105)
T ss_pred             --hhcCCeEEEEeCCCc--------------cHHHHHHHHHHcCCCCEEEEeCcHHHhc
Confidence              124789999999998              8999999999999999999999999995

Included in this CD are the rhodanese-like domains found C-terminal of the serine/threonine protein kinases catalytic (S_TKc) domain and the Tre-2, BUB2p, Cdc16p (TBC) domain. The putative active site Cys residue is not present in this CD.

>cd01449 TST_Repeat_2 Thiosulfate sulfurtransferase (TST), C-terminal, catalytic domain

Probab=99.83  E-value=2e-20  Score=145.35  Aligned_cols=105  Identities=30%  Similarity=0.491  Sum_probs=84.1

Q ss_pred             ccHHHHHHHhcCCCeEEEEcCChhhhhh-----------CCCCCCeeechhhHHhhhhhHHHHHHhhhhhccccCCCCCC
Q 026264           95 VEAKEALRLQKENNFVILDVRPEAEFKE-----------AHPPGAINVQIYRLIKEWTAWDIARRAAFAFFGIFSGTEEN  163 (241)
Q Consensus        95 Is~~el~~~l~~~~~~lIDvR~~~Ey~~-----------ghIpGAinip~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~  163 (241)
                      |+++++.++++.++.+|||||++.||..           ||||||+|+|+..+....              +.+    .+
T Consensus         1 ~s~~~l~~~l~~~~~~iiDvR~~~e~~~~~~~~~~~~~~ghIpgA~~~p~~~~~~~~--------------~~~----~~   62 (118)
T cd01449           1 VTAEEVLANLDSGDVQLVDARSPERFRGEVPEPRPGLRSGHIPGAVNIPWTSLLDED--------------GTF----KS   62 (118)
T ss_pred             CCHHHHHHhcCCCCcEEEeCCCHHHcCCcCCCCCCCCcCCcCCCCcccChHHhcCCC--------------CCc----CC
Confidence            5788899988766799999999999987           999999999998764311              111    12


Q ss_pred             h-HHHhhhhhcCCCCCCeEEEEcCCCCCCCCCCCCCCchhhHHHHHHHHHHHcCCcceeEccccHHHHH
Q 026264          164 P-EFLQTGVESQLDKDAKIIVACATGGTMKPSQNLPEGQQSRSLIAAYLLVLNGYKNVYHLEGGLYKWF  231 (241)
Q Consensus       164 ~-~~~~~~~~~~i~~~~~IVvyC~~G~~~~~~~~~~~~~~~rs~~aa~~L~~~Gy~nV~~l~GG~~~W~  231 (241)
                      + +|.+.+...+++++++||+||++|.              +|.++++.|+.+||++|++|+||+.+|.
T Consensus        63 ~~~~~~~~~~~~~~~~~~iv~yc~~g~--------------~s~~~~~~l~~~G~~~v~~l~GG~~~W~  117 (118)
T cd01449          63 PEELRALFAALGITPDKPVIVYCGSGV--------------TACVLLLALELLGYKNVRLYDGSWSEWG  117 (118)
T ss_pred             HHHHHHHHHHcCCCCCCCEEEECCcHH--------------HHHHHHHHHHHcCCCCeeeeCChHHHhc
Confidence            2 3322223346789999999999987              9999999999999999999999999996

TST contains 2 copies of the Rhodanese Homology Domain; this is the second repeat. Only the second repeat contains the catalytically active Cys residue.

>cd01522 RHOD_1 Member of the Rhodanese Homology Domain superfamily, subgroup 1

Probab=99.82  E-value=2.9e-20  Score=145.60  Aligned_cols=103  Identities=32%  Similarity=0.483  Sum_probs=84.6

Q ss_pred             ccHHHHHHHhcC-CCeEEEEcCChhhhh-hCCCCCCeeechhhHHhhhhhHHHHHHhhhhhccccCCCCCChHHHhhhhh
Q 026264           95 VEAKEALRLQKE-NNFVILDVRPEAEFK-EAHPPGAINVQIYRLIKEWTAWDIARRAAFAFFGIFSGTEENPEFLQTGVE  172 (241)
Q Consensus        95 Is~~el~~~l~~-~~~~lIDvR~~~Ey~-~ghIpGAinip~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  172 (241)
                      |+++++.+++++ ++.+|||||++.||. .||||||+|+|+..+...                     .....|... ..
T Consensus         1 is~~el~~~l~~~~~~~vIDvR~~~e~~~~ghIpgA~~ip~~~~~~~---------------------~~~~~~~~~-l~   58 (117)
T cd01522           1 LTPAEAWALLQADPQAVLVDVRTEAEWKFVGGVPDAVHVAWQVYPDM---------------------EINPNFLAE-LE   58 (117)
T ss_pred             CCHHHHHHHHHhCCCeEEEECCCHHHHhcccCCCCceecchhhcccc---------------------ccCHHHHHH-HH
Confidence            578899999887 479999999999999 999999999999876431                     011233333 22


Q ss_pred             cCCCCCCeEEEEcCCCCCCCCCCCCCCchhhHHHHHHHHHHHcCCcceeEccccHHHHHhC
Q 026264          173 SQLDKDAKIIVACATGGTMKPSQNLPEGQQSRSLIAAYLLVLNGYKNVYHLEGGLYKWFKE  233 (241)
Q Consensus       173 ~~i~~~~~IVvyC~~G~~~~~~~~~~~~~~~rs~~aa~~L~~~Gy~nV~~l~GG~~~W~~~  233 (241)
                      ..++++++||+||++|.              +|..++..|++.||+||+.|.||+.+|.+.
T Consensus        59 ~~~~~~~~ivv~C~~G~--------------rs~~aa~~L~~~G~~~v~~l~gG~~~~~~~  105 (117)
T cd01522          59 EKVGKDRPVLLLCRSGN--------------RSIAAAEAAAQAGFTNVYNVLEGFEGDLDA  105 (117)
T ss_pred             hhCCCCCeEEEEcCCCc--------------cHHHHHHHHHHCCCCeEEECcCceecCCCC
Confidence            33478899999999997              999999999999999999999999999765

This CD includes the putative rhodanese-related sulfurtransferases of several uncharacterized proteins.

>PLN02723 3-mercaptopyruvate sulfurtransferase

Probab=99.82  E-value=1e-19  Score=165.60  Aligned_cols=122  Identities=19%  Similarity=0.241  Sum_probs=96.8

Q ss_pred             ccccHHHHHHHhcCCCeEEEEcC--------C-hhhhhhCCCCCCeeechhhHHhhhhhHHHHHHhhhhhccccCCCCCC
Q 026264           93 RSVEAKEALRLQKENNFVILDVR--------P-EAEFKEAHPPGAINVQIYRLIKEWTAWDIARRAAFAFFGIFSGTEEN  163 (241)
Q Consensus        93 ~~Is~~el~~~l~~~~~~lIDvR--------~-~~Ey~~ghIpGAinip~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~  163 (241)
                      ..|++++|.+++++++++|||+|        + ..+|..||||||+|+++..+.+....          ..+.+   +..
T Consensus        22 ~lvs~~~L~~~l~~~~~~IiDvr~~~~~~~r~~~~~y~~gHIPgAi~i~~~~~~~~~~~----------~~~~l---p~~   88 (320)
T PLN02723         22 PVVSVDWLHANLREPDVKVLDASWYMPDEQRNPIQEYQVAHIPGALFFDLDGISDRTTD----------LPHML---PSE   88 (320)
T ss_pred             ceecHHHHHHHhcCCCeEEEEeeccccCCCCchHHHHHhccCCCCeecCHHHhcCCCCC----------cCCCC---CCH
Confidence            36999999999988889999996        3 37899999999999998765432100          01111   223


Q ss_pred             hHHHhhhhhcCCCCCCeEEEEcCCCCCCCCCCCCCCchhhHHHHHHHHHHHcCCcceeEccccHHHHHhCCCCcccC
Q 026264          164 PEFLQTGVESQLDKDAKIIVACATGGTMKPSQNLPEGQQSRSLIAAYLLVLNGYKNVYHLEGGLYKWFKEELPEVSE  240 (241)
Q Consensus       164 ~~~~~~~~~~~i~~~~~IVvyC~~G~~~~~~~~~~~~~~~rs~~aa~~L~~~Gy~nV~~l~GG~~~W~~~g~p~~~g  240 (241)
                      .+|.+.+...++.++++|||||..|.             ..+.++++.|+.+||+||++|+||+.+|..+|+|++++
T Consensus        89 ~~~~~~l~~~Gi~~~~~VVvY~~~g~-------------~~a~r~~~~L~~~G~~~V~~LdGG~~~W~~~G~pv~~~  152 (320)
T PLN02723         89 EAFAAAVSALGIENKDGVVVYDGKGI-------------FSAARVWWMFRVFGHEKVWVLDGGLPKWRASGYDVESS  152 (320)
T ss_pred             HHHHHHHHHcCCCCCCEEEEEcCCCc-------------chHHHHHHHHHHcCCCceEEcCCCHHHHHHcCCCcccC
Confidence            45555545578999999999999886             26788999999999999999999999999999999875

>cd01530 Cdc25 Cdc25 phosphatases are members of the Rhodanese Homology Domain superfamily

Probab=99.82  E-value=6.2e-20  Score=144.87  Aligned_cols=99  Identities=25%  Similarity=0.390  Sum_probs=80.3

Q ss_pred             ccccHHHHHHHhcCC------CeEEEEcCChhhhhhCCCCCCeeechhh-HHhhhhhHHHHHHhhhhhccccCCCCCChH
Q 026264           93 RSVEAKEALRLQKEN------NFVILDVRPEAEFKEAHPPGAINVQIYR-LIKEWTAWDIARRAAFAFFGIFSGTEENPE  165 (241)
Q Consensus        93 ~~Is~~el~~~l~~~------~~~lIDvR~~~Ey~~ghIpGAinip~~~-l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  165 (241)
                      ..|+++++.+++.++      +++|||||++.||..||||||+|+|+.. +....                         
T Consensus         2 ~~Is~~el~~~l~~~~~~~~~~~~liDvR~~~e~~~ghI~gA~~ip~~~~l~~~~-------------------------   56 (121)
T cd01530           2 KRISPETLARLLQGKYDNFFDKYIIIDCRFPYEYNGGHIKGAVNLSTKDELEEFF-------------------------   56 (121)
T ss_pred             CccCHHHHHHHHhcccccCCCCEEEEECCCHHHHhCCcCCCCEeCCcHHHHHHHH-------------------------
Confidence            469999999998753      6899999999999999999999999863 33211                         


Q ss_pred             HHhhhhhcCCCCCCeEEEEcC-CCCCCCCCCCCCCchhhHHHHHHHHHHHc------------CCcceeEccccHHHHH
Q 026264          166 FLQTGVESQLDKDAKIIVACA-TGGTMKPSQNLPEGQQSRSLIAAYLLVLN------------GYKNVYHLEGGLYKWF  231 (241)
Q Consensus       166 ~~~~~~~~~i~~~~~IVvyC~-~G~~~~~~~~~~~~~~~rs~~aa~~L~~~------------Gy~nV~~l~GG~~~W~  231 (241)
                       .+......++++++|||||. +|.              ||..+++.|+..            ||.+|++|+||+.+|.
T Consensus        57 -~~~~~~~~~~~~~~vv~yC~~sg~--------------rs~~aa~~L~~~~~~~~~~~~~~~g~~~v~~L~GG~~~f~  120 (121)
T cd01530          57 -LDKPGVASKKKRRVLIFHCEFSSK--------------RGPRMARHLRNLDRELNSNRYPLLYYPEIYILEGGYKNFF  120 (121)
T ss_pred             -HHhhcccccCCCCEEEEECCCccc--------------cHHHHHHHHHHHhhhhccccCCCCCCCeEEEEcChhHhhc
Confidence             00001124789999999997 777              999999999985            9999999999999985

They activate the cell division kinases throughout the cell cycle progression. Cdc25 phosphatases dephosphorylate phosphotyrosine and phosphothreonine residues, in order to activate their Cdk/cyclin substrates. Cdc25A phosphatase functions to regulate S phase entry and Cdc25B is required for G2/M phase transition of the cell cycle. The Cdc25 domain binds oxyanions at the catalytic site and has the signature motif (H/YCxxxxxR).

>PF00581 Rhodanese: Rhodanese-like domain This Prosite entry represents a subset of this family

Probab=99.82  E-value=6e-20  Score=139.97  Aligned_cols=107  Identities=32%  Similarity=0.553  Sum_probs=80.3

Q ss_pred             cHHHHHHHhcCCCeEEEEcCChhhhhhCCCCCCeeechhhHHhhhhhHHHHHHhhhhhccccCCCCCChHHHhhhhhcCC
Q 026264           96 EAKEALRLQKENNFVILDVRPEAEFKEAHPPGAINVQIYRLIKEWTAWDIARRAAFAFFGIFSGTEENPEFLQTGVESQL  175 (241)
Q Consensus        96 s~~el~~~l~~~~~~lIDvR~~~Ey~~ghIpGAinip~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i  175 (241)
                      +++|+.+++++++++|||||++.+|..||||||+|+|+..+........               .....++... ....+
T Consensus         1 s~~el~~~l~~~~~~liD~R~~~~~~~~hI~ga~~i~~~~~~~~~~~~~---------------~~~~~~~~~~-~~~~~   64 (113)
T PF00581_consen    1 SPEELKEMLENESVLLIDVRSPEEYERGHIPGAVNIPFPSLDPDEPSLS---------------EDKLDEFLKE-LGKKI   64 (113)
T ss_dssp             -HHHHHHHHTTTTEEEEEESSHHHHHHSBETTEEEEEGGGGSSSSSBCH---------------HHHHHHHHHH-HTHGS
T ss_pred             CHHHHHhhhhCCCeEEEEeCCHHHHHcCCCCCCcccccccccccccccc---------------cccccccccc-ccccc
Confidence            5789999996679999999999999999999999999966511000000               0001222333 44567


Q ss_pred             CCCCeEEEEcCCCCCCCCCCCCCCchhhHHHHHHHH-----HHHcCCcceeEccccHHHHHh
Q 026264          176 DKDAKIIVACATGGTMKPSQNLPEGQQSRSLIAAYL-----LVLNGYKNVYHLEGGLYKWFK  232 (241)
Q Consensus       176 ~~~~~IVvyC~~G~~~~~~~~~~~~~~~rs~~aa~~-----L~~~Gy~nV~~l~GG~~~W~~  232 (241)
                      +++++|||||..|.              ++..++..     |..+||++|++|+|||.+|.+
T Consensus        65 ~~~~~iv~yc~~~~--------------~~~~~~~~~~~~~l~~~g~~~v~~l~GG~~~w~~  112 (113)
T PF00581_consen   65 DKDKDIVFYCSSGW--------------RSGSAAAARVAWILKKLGFKNVYILDGGFEAWKA  112 (113)
T ss_dssp             TTTSEEEEEESSSC--------------HHHHHHHHHHHHHHHHTTTSSEEEETTHHHHHHH
T ss_pred             cccccceeeeeccc--------------ccchhHHHHHHHHHHHcCCCCEEEecChHHHHhc
Confidence            88899999998876              67666665     889999999999999999986

; InterPro: IPR001763 Rhodanese, a sulphurtransferase involved in cyanide detoxification (see IPR001307 from INTERPRO) shares evolutionary relationship with a large family of proteins [], including Cdc25 phosphatase catalytic domain. non-catalytic domains of eukaryotic dual-specificity MAPK-phosphatases. non-catalytic domains of yeast PTP-type MAPK-phosphatases. non-catalytic domains of yeast Ubp4, Ubp5, Ubp7. non-catalytic domains of mammalian Ubp-Y. Drosophila heat shock protein HSP-67BB. several bacterial cold-shock and phage shock proteins. plant senescence associated proteins. catalytic and non-catalytic domains of rhodanese (see IPR001307 from INTERPRO). Rhodanese has an internal duplication. This domain is found as a single copy in other proteins, including phosphatases and ubiquitin C-terminal hydrolases [].; PDB: 2J6P_D 2FSX_A 1UAR_A 1OKG_A 1GMX_A 1GN0_A 3NTD_B 3NTA_B 3NT6_A 1C25_A ....

>PRK11493 sseA 3-mercaptopyruvate sulfurtransferase; Provisional

Probab=99.82  E-value=1.3e-19  Score=162.02  Aligned_cols=121  Identities=22%  Similarity=0.259  Sum_probs=95.4

Q ss_pred             cccHHHHHHHhcCCCeEEEEcCC----------hhhhhhCCCCCCeeechhhHHhhhhhHHHHHHhhhhhccccCCCCCC
Q 026264           94 SVEAKEALRLQKENNFVILDVRP----------EAEFKEAHPPGAINVQIYRLIKEWTAWDIARRAAFAFFGIFSGTEEN  163 (241)
Q Consensus        94 ~Is~~el~~~l~~~~~~lIDvR~----------~~Ey~~ghIpGAinip~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~  163 (241)
                      .|+++++.+.+++++++|||+|+          +.+|..||||||+|+|+..+.....          .+.+.+   ...
T Consensus         6 lvs~~~l~~~l~~~~~~iiD~R~~~~~~~~~~~~~~y~~GHIpGA~~~~~~~~~~~~~----------~~~~~~---~~~   72 (281)
T PRK11493          6 FVAADWLAEHIDDPEIQIIDARMAPPGQEDRDVAAEYRAGHIPGAVFFDIEALSDHTS----------PLPHMM---PRP   72 (281)
T ss_pred             ccCHHHHHHhcCCCCeEEEEeeCCCCCccccchHHHHHhCcCCCCEEcCHHHhcCCCC----------CCCCCC---CCH
Confidence            58999999999888899999996          6889999999999999876533110          000111   112


Q ss_pred             hHHHhhhhhcCCCCCCeEEEEcCCCCCCCCCCCCCCchhhHHHHHHHHHHHcCCcceeEccccHHHHHhCCCCcccC
Q 026264          164 PEFLQTGVESQLDKDAKIIVACATGGTMKPSQNLPEGQQSRSLIAAYLLVLNGYKNVYHLEGGLYKWFKEELPEVSE  240 (241)
Q Consensus       164 ~~~~~~~~~~~i~~~~~IVvyC~~G~~~~~~~~~~~~~~~rs~~aa~~L~~~Gy~nV~~l~GG~~~W~~~g~p~~~g  240 (241)
                      .+|.+.+...+++++++|||||.++.             ..+.++++.|..+||+||++|+||+.+|.++|+|++++
T Consensus        73 ~~~~~~~~~~Gi~~d~~VVvyc~~~~-------------~~a~~~~~~l~~~G~~~v~~l~GG~~~W~~~g~p~~~~  136 (281)
T PRK11493         73 ETFAVAMRELGVNQDKHLVVYDEGNL-------------FSAPRAWWMLRTFGVEKVSILAGGLAGWQRDDLLLEEG  136 (281)
T ss_pred             HHHHHHHHHcCCCCCCEEEEECCCCC-------------chHHHHHHHHHHhcCCcEEEcCCCHHHHHHcCCCccCC
Confidence            34444434578999999999999876             25778899999999999999999999999999999876

>PRK01415 hypothetical protein; Validated

Probab=99.82  E-value=8.1e-20  Score=160.51  Aligned_cols=135  Identities=24%  Similarity=0.342  Sum_probs=109.2

Q ss_pred             EeecCchhhhHhhhccCCCCCCccccCCCCCCCCCCCccchHHHHHHHhhhccccccHHHHHHHhcCCCeEEEEcCChhh
Q 026264           40 CLTVRSFTFSRRRLSSQSVPRGLIIQNAATKPAKSPAEEDWKTKRELLLQKRVRSVEAKEALRLQKENNFVILDVRPEAE  119 (241)
Q Consensus        40 ~~~~~s~~~~~~~~~~~~~~~g~~~~~~~~~p~~~~~~~~~~~~~~~l~~~~~~~Is~~el~~~l~~~~~~lIDvR~~~E  119 (241)
                      +.....|..++.|++...+..|+.-  .  .|....                -..|+++++.+++++++++|||||++.|
T Consensus        79 ~~~~~~F~~l~vr~k~eiV~~g~~~--~--~~~~~~----------------g~~i~p~e~~~ll~~~~~vvIDVRn~~E  138 (247)
T PRK01415         79 YSDVHPFQKLKVRLKKEIVAMNVDD--L--NVDLFK----------------GEYIEPKDWDEFITKQDVIVIDTRNDYE  138 (247)
T ss_pred             cccCCCCCccEEEeeceEEecCCCC--C--CccccC----------------ccccCHHHHHHHHhCCCcEEEECCCHHH
Confidence            3456778899999999999999752  1  122111                2579999999999988999999999999


Q ss_pred             hhhCCCCCCeeechhhHHhhhhhHHHHHHhhhhhccccCCCCCChHHHhhhhhcCCCCCCeEEEEcCCCCCCCCCCCCCC
Q 026264          120 FKEAHPPGAINVQIYRLIKEWTAWDIARRAAFAFFGIFSGTEENPEFLQTGVESQLDKDAKIIVACATGGTMKPSQNLPE  199 (241)
Q Consensus       120 y~~ghIpGAinip~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~IVvyC~~G~~~~~~~~~~~  199 (241)
                      |..||||||+|+|+..+.+                        .+++++.  ...++++++|++||.+|.          
T Consensus       139 ~~~Ghi~gAinip~~~f~e------------------------~~~~~~~--~~~~~k~k~Iv~yCtgGi----------  182 (247)
T PRK01415        139 VEVGTFKSAINPNTKTFKQ------------------------FPAWVQQ--NQELLKGKKIAMVCTGGI----------  182 (247)
T ss_pred             HhcCCcCCCCCCChHHHhh------------------------hHHHHhh--hhhhcCCCeEEEECCCCh----------
Confidence            9999999999999877643                        1222211  234678999999999998          


Q ss_pred             chhhHHHHHHHHHHHcCCcceeEccccHHHHHhCC
Q 026264          200 GQQSRSLIAAYLLVLNGYKNVYHLEGGLYKWFKEE  234 (241)
Q Consensus       200 ~~~~rs~~aa~~L~~~Gy~nV~~l~GG~~~W~~~g  234 (241)
                          ||..++..|++.||++|++|.||+.+|.+..
T Consensus       183 ----Rs~kAa~~L~~~Gf~~Vy~L~GGi~~w~~~~  213 (247)
T PRK01415        183 ----RCEKSTSLLKSIGYDEVYHLKGGILQYLEDT  213 (247)
T ss_pred             ----HHHHHHHHHHHcCCCcEEEechHHHHHHHhc
Confidence                9999999999999999999999999999763

>cd01535 4RHOD_Repeat_4 Member of the Rhodanese Homology Domain superfamily, repeat 4

Probab=99.81  E-value=1.2e-19  Score=147.77  Aligned_cols=95  Identities=26%  Similarity=0.339  Sum_probs=80.5

Q ss_pred             HHHHhcCC-CeEEEEcCChhhhhhCCCCCCeeechhhHHhhhhhHHHHHHhhhhhccccCCCCCChHHHhhhhhcCCCCC
Q 026264          100 ALRLQKEN-NFVILDVRPEAEFKEAHPPGAINVQIYRLIKEWTAWDIARRAAFAFFGIFSGTEENPEFLQTGVESQLDKD  178 (241)
Q Consensus       100 l~~~l~~~-~~~lIDvR~~~Ey~~ghIpGAinip~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~  178 (241)
                      +.+++.++ +++|||||++.+|..||||||+|+|...+..                                ....++++
T Consensus         2 l~~~l~~~~~~~ivDvR~~~e~~~gHIpgAi~~~~~~l~~--------------------------------~l~~l~~~   49 (145)
T cd01535           2 LAAWLGEGGQTAVVDVTASANYVKRHIPGAWWVLRAQLAQ--------------------------------ALEKLPAA   49 (145)
T ss_pred             hHHHHhCCCCeEEEECCCHHHHHcCCCCCceeCCHHHHHH--------------------------------HHHhcCCC
Confidence            34445443 5899999999999999999999999876543                                12335678


Q ss_pred             CeEEEEcCCCCCCCCCCCCCCchhhHHHHHHHHHHHcCCcceeEccccHHHHHhCCCCcccC
Q 026264          179 AKIIVACATGGTMKPSQNLPEGQQSRSLIAAYLLVLNGYKNVYHLEGGLYKWFKEELPEVSE  240 (241)
Q Consensus       179 ~~IVvyC~~G~~~~~~~~~~~~~~~rs~~aa~~L~~~Gy~nV~~l~GG~~~W~~~g~p~~~g  240 (241)
                      ++|||||.+|.              +|..++..|+..||++|++|+||+.+|...|+|++++
T Consensus        50 ~~vVv~c~~g~--------------~a~~aa~~L~~~G~~~v~~L~GG~~aW~~~g~pl~~~   97 (145)
T cd01535          50 ERYVLTCGSSL--------------LARFAAADLAALTVKPVFVLEGGTAAWIAAGLPVESG   97 (145)
T ss_pred             CCEEEEeCCCh--------------HHHHHHHHHHHcCCcCeEEecCcHHHHHHCCCCcccC
Confidence            89999999986              8999999999999999999999999999999999875

This CD includes putative rhodanese-related sulfurtransferases which contain 4 copies of the Rhodanese Homology Domain. This CD aligns the 4th repeat which, in general, contains the putative catalytic Cys residue.

>cd01445 TST_Repeats Thiosulfate sulfurtransferases (TST) contain 2 copies of the Rhodanese Homology Domain

Probab=99.80  E-value=4.1e-19  Score=143.43  Aligned_cols=109  Identities=26%  Similarity=0.385  Sum_probs=85.6

Q ss_pred             ccHHHHHHHhc----CCCeEEEEcCCh--------hhhhh------------CCCCCCeeechhhHHhhhhhHHHHHHhh
Q 026264           95 VEAKEALRLQK----ENNFVILDVRPE--------AEFKE------------AHPPGAINVQIYRLIKEWTAWDIARRAA  150 (241)
Q Consensus        95 Is~~el~~~l~----~~~~~lIDvR~~--------~Ey~~------------ghIpGAinip~~~l~~~~~~~~~~~~~~  150 (241)
                      |+++++.+.++    .++++|||+|..        .+|..            ||||||+|+|+..+....          
T Consensus         1 vs~e~l~~~l~~~~~~~~~~iiD~r~~~~~~~~~~~~y~~~~~~~~~~~~~~GHIPgAv~~~~~~~~~~~----------   70 (138)
T cd01445           1 KSTEQLAENLEAGKVGKGFQLLDARAQSPGTREARGEYLETQPEPDAVGLDSGHIPGASFFDFEECLDEA----------   70 (138)
T ss_pred             CCHHHHHHHhhccccCCCeEEEEccCCCccCcchhhhhcccCCCCCcCCCcCCcCCCCEeeCHHHhhCcC----------
Confidence            57889999987    457999999987        88998            999999999987654311          


Q ss_pred             hhhccccCCCC-CChHHHhhhhhcCCCCCCeEEEEcCC---CCCCCCCCCCCCchhhHHHHHHHHHHHcCCcceeEcccc
Q 026264          151 FAFFGIFSGTE-ENPEFLQTGVESQLDKDAKIIVACAT---GGTMKPSQNLPEGQQSRSLIAAYLLVLNGYKNVYHLEGG  226 (241)
Q Consensus       151 ~~~~~~~~~~~-~~~~~~~~~~~~~i~~~~~IVvyC~~---G~~~~~~~~~~~~~~~rs~~aa~~L~~~Gy~nV~~l~GG  226 (241)
                          +.+.... ...+|.+.+...+++++++||+||+.   |.              .|.++++.|+.+|++||++|+||
T Consensus        71 ----~~~~~~~p~~~~~~~~~~~~GI~~~~~vVvY~~~~~~g~--------------~A~r~~~~l~~~G~~~v~ildGG  132 (138)
T cd01445          71 ----GFEESMEPSEAEFAAMFEAKGIDLDKHLIATDGDDLGGF--------------TACHIALAARLCGHPDVAILDGG  132 (138)
T ss_pred             ----CCCCCCCCCHHHHHHHHHHcCCCCCCeEEEECCCCCcch--------------HHHHHHHHHHHcCCCCeEEeCCC
Confidence                1111111 22355555455799999999999986   44              89999999999999999999999


Q ss_pred             HHHHH
Q 026264          227 LYKWF  231 (241)
Q Consensus       227 ~~~W~  231 (241)
                      +.+|+
T Consensus       133 ~~~W~  137 (138)
T cd01445         133 FFEWF  137 (138)
T ss_pred             HHHhh
Confidence            99996

Only the second repeat contains the catalytically active Cys residue. The role of the 1st repeat is uncertain, but believed to be involved in protein interaction. This CD aligns the 1st and 2nd repeats.

>cd01529 4RHOD_Repeats Member of the Rhodanese Homology Domain superfamily

Probab=99.80  E-value=2.3e-19  Score=135.04  Aligned_cols=86  Identities=28%  Similarity=0.395  Sum_probs=70.7

Q ss_pred             CCCeEEEEcCChhhhhhCCCCCCeeechhhHHhhhhhHHHHHHhhhhhccccCCCCCChHHHhhhhhcCCCCCCeEEEEc
Q 026264          106 ENNFVILDVRPEAEFKEAHPPGAINVQIYRLIKEWTAWDIARRAAFAFFGIFSGTEENPEFLQTGVESQLDKDAKIIVAC  185 (241)
Q Consensus       106 ~~~~~lIDvR~~~Ey~~ghIpGAinip~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~IVvyC  185 (241)
                      +++.+|||||++.||..||||||+|+|+..+...                        .+.++.  ...++++++||+||
T Consensus        10 ~~~~~iiDvR~~~~~~~~hIpgA~~ip~~~~~~~------------------------~~~~~~--~~~~~~~~~ivv~c   63 (96)
T cd01529          10 EPGTALLDVRAEDEYAAGHLPGKRSIPGAALVLR------------------------SQELQA--LEAPGRATRYVLTC   63 (96)
T ss_pred             CCCeEEEeCCCHHHHcCCCCCCcEeCCHHHhcCC------------------------HHHHHH--hhcCCCCCCEEEEe
Confidence            3478999999999999999999999998755321                        111111  12357889999999


Q ss_pred             CCCCCCCCCCCCCCchhhHHHHHHHHHHHcCCcceeEccccHHHHH
Q 026264          186 ATGGTMKPSQNLPEGQQSRSLIAAYLLVLNGYKNVYHLEGGLYKWF  231 (241)
Q Consensus       186 ~~G~~~~~~~~~~~~~~~rs~~aa~~L~~~Gy~nV~~l~GG~~~W~  231 (241)
                      .+|.              ++..++..|+..||+||++|+||+.+|.
T Consensus        64 ~~g~--------------~s~~~~~~l~~~G~~~v~~l~GG~~~W~   95 (96)
T cd01529          64 DGSL--------------LARFAAQELLALGGKPVALLDGGTSAWV   95 (96)
T ss_pred             CChH--------------HHHHHHHHHHHcCCCCEEEeCCCHHHhc
Confidence            9987              8999999999999999999999999996

This CD includes putative rhodanese-related sulfurtransferases which contain 4 copies of the Rhodanese Homology Domain. Only the second and most of the fourth repeats contain the putative catalytic Cys residue. This CD aligns the 1st , 2nd, 3rd, and 4th repeats.

>cd01532 4RHOD_Repeat_1 Member of the Rhodanese Homology Domain superfamily, repeat 1

Probab=99.79  E-value=3.9e-19  Score=133.30  Aligned_cols=88  Identities=33%  Similarity=0.423  Sum_probs=70.5

Q ss_pred             HhcCCCeEEEEcCChhhhhhCCCCCCeeechhhHHhhhhhHHHHHHhhhhhccccCCCCCChHHHhhhhhcCCCCCCeEE
Q 026264          103 LQKENNFVILDVRPEAEFKEAHPPGAINVQIYRLIKEWTAWDIARRAAFAFFGIFSGTEENPEFLQTGVESQLDKDAKII  182 (241)
Q Consensus       103 ~l~~~~~~lIDvR~~~Ey~~ghIpGAinip~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~IV  182 (241)
                      +++.++++|||+|++.||..||||||+|+|+..+....                              .....+++++||
T Consensus         5 ~~~~~~~~liDvR~~~e~~~~hi~ga~~ip~~~~~~~~------------------------------~~~~~~~~~~iv   54 (92)
T cd01532           5 LLAREEIALIDVREEDPFAQSHPLWAANLPLSRLELDA------------------------------WVRIPRRDTPIV   54 (92)
T ss_pred             hhcCCCeEEEECCCHHHHhhCCcccCeeCCHHHHHhhh------------------------------HhhCCCCCCeEE
Confidence            34556799999999999999999999999987653210                              111124588999


Q ss_pred             EEcCCCCCCCCCCCCCCchhhHHHHHHHHHHHcCCcceeEccccHHHHHh
Q 026264          183 VACATGGTMKPSQNLPEGQQSRSLIAAYLLVLNGYKNVYHLEGGLYKWFK  232 (241)
Q Consensus       183 vyC~~G~~~~~~~~~~~~~~~rs~~aa~~L~~~Gy~nV~~l~GG~~~W~~  232 (241)
                      |||.+|..            ..|..+++.|+..||++|++|+||+.+|.+
T Consensus        55 l~c~~G~~------------~~s~~aa~~L~~~G~~~v~~l~GG~~~W~~   92 (92)
T cd01532          55 VYGEGGGE------------DLAPRAARRLSELGYTDVALLEGGLQGWRA   92 (92)
T ss_pred             EEeCCCCc------------hHHHHHHHHHHHcCccCEEEccCCHHHHcC
Confidence            99999871            126899999999999999999999999973

This CD includes putative rhodanese-related sulfurtransferases which contain 4 copies of the Rhodanese Homology Domain. This CD aligns the 1st repeat which does not contain the putative catalytic Cys residue.

>cd00158 RHOD Rhodanese Homology Domain (RHOD); an alpha beta fold domain found duplicated in the rhodanese protein

Probab=99.79  E-value=3.4e-19  Score=130.22  Aligned_cols=88  Identities=42%  Similarity=0.638  Sum_probs=75.6

Q ss_pred             HHHHhcCCCeEEEEcCChhhhhhCCCCCCeeechhhHHhhhhhHHHHHHhhhhhccccCCCCCChHHHhhhhhcCCCCCC
Q 026264          100 ALRLQKENNFVILDVRPEAEFKEAHPPGAINVQIYRLIKEWTAWDIARRAAFAFFGIFSGTEENPEFLQTGVESQLDKDA  179 (241)
Q Consensus       100 l~~~l~~~~~~lIDvR~~~Ey~~ghIpGAinip~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~  179 (241)
                      +...++.++.+|||+|++.||..||||||+|+|+..+....                              ....+++++
T Consensus         2 ~~~~~~~~~~~iiD~R~~~~~~~~~i~ga~~~~~~~~~~~~------------------------------~~~~~~~~~   51 (89)
T cd00158           2 LKELLDDEDAVLLDVREPEEYAAGHIPGAINIPLSELEERA------------------------------ALLELDKDK   51 (89)
T ss_pred             hHHHhcCCCeEEEECCCHHHHhccccCCCEecchHHHhhHH------------------------------HhhccCCCC
Confidence            34445566899999999999999999999999998765421                              124578999


Q ss_pred             eEEEEcCCCCCCCCCCCCCCchhhHHHHHHHHHHHcCCcceeEccccHHHHH
Q 026264          180 KIIVACATGGTMKPSQNLPEGQQSRSLIAAYLLVLNGYKNVYHLEGGLYKWF  231 (241)
Q Consensus       180 ~IVvyC~~G~~~~~~~~~~~~~~~rs~~aa~~L~~~Gy~nV~~l~GG~~~W~  231 (241)
                      +|||||..|.              ++..+++.|+..||++|++|+||+.+|.
T Consensus        52 ~vv~~c~~~~--------------~a~~~~~~l~~~G~~~v~~l~gG~~~w~   89 (89)
T cd00158          52 PIVVYCRSGN--------------RSARAAKLLRKAGGTNVYNLEGGMLAWK   89 (89)
T ss_pred             eEEEEeCCCc--------------hHHHHHHHHHHhCcccEEEecCChhhcC
Confidence            9999999987              9999999999999999999999999994

The cysteine containing enzymatically active version of the domain is also found in the Cdc25 class of protein phosphatases and a variety of proteins such as sulfide dehydrogenases and certain stress proteins such as senesence specific protein 1 in plants, PspE and GlpE in bacteria and cyanide and arsenate resistance proteins. Inactive versions (no active site cysteine) are also seen in dual specificity phosphatases, ubiquitin hydrolases from yeast and in sulfuryltransferases, where they are believed to play a regulatory role in multidomain proteins.

>COG2897 SseA Rhodanese-related sulfurtransferase [Inorganic ion transport and metabolism]

Probab=99.79  E-value=6.6e-19  Score=157.50  Aligned_cols=116  Identities=25%  Similarity=0.403  Sum_probs=97.8

Q ss_pred             cccHHHHHHHhcCCCeEEEEcCChhhhhh----------CCCCCCeeechhhHHhhhhhHHHHHHhhhhhccccCCCCCC
Q 026264           94 SVEAKEALRLQKENNFVILDVRPEAEFKE----------AHPPGAINVQIYRLIKEWTAWDIARRAAFAFFGIFSGTEEN  163 (241)
Q Consensus        94 ~Is~~el~~~l~~~~~~lIDvR~~~Ey~~----------ghIpGAinip~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~  163 (241)
                      .++.++++..++.+..+|||+|++.+|..          ||||||+|+|+..+.++.              +.    -+.
T Consensus       157 ~~~~~~~~~~~~~~~~~liDaR~~~rf~G~~~ep~~~~~GHIPGAiNipw~~~~~~~--------------~~----~~~  218 (285)
T COG2897         157 VVDATLVADALEVPAVLLIDARSPERFRGKEPEPRDGKAGHIPGAINIPWTDLVDDG--------------GL----FKS  218 (285)
T ss_pred             cCCHHHHHHHhcCCCeEEEecCCHHHhCCCCCCCCCCCCCCCCCCcCcCHHHHhcCC--------------Cc----cCc
Confidence            57778888888888899999999999998          999999999999987731              11    123


Q ss_pred             hHHHhhhh-hcCCCCCCeEEEEcCCCCCCCCCCCCCCchhhHHHHHHHHHHHcCCcceeEccccHHHHHhC-CCCcccCC
Q 026264          164 PEFLQTGV-ESQLDKDAKIIVACATGGTMKPSQNLPEGQQSRSLIAAYLLVLNGYKNVYHLEGGLYKWFKE-ELPEVSEE  241 (241)
Q Consensus       164 ~~~~~~~~-~~~i~~~~~IVvyC~~G~~~~~~~~~~~~~~~rs~~aa~~L~~~Gy~nV~~l~GG~~~W~~~-g~p~~~g~  241 (241)
                      ++.++.+. ..+++++++||+||++|.              +|...+..|+.+|+.++++|+|+|.+|... +.|+++|+
T Consensus       219 ~~~~~~l~~~~gi~~~~~vI~yCgsG~--------------~As~~~~al~~lg~~~~~lYdGSWsEWg~~~~~PV~~g~  284 (285)
T COG2897         219 PEEIARLYADAGIDPDKEVIVYCGSGV--------------RASVTWLALAELGGPNNRLYDGSWSEWGSDPDRPVETGE  284 (285)
T ss_pred             HHHHHHHHHhcCCCCCCCEEEEcCCch--------------HHHHHHHHHHHhCCCCcccccChHHHhhcCCCCccccCC
Confidence            33443322 378999999999999998              999999999999999889999999999987 77999986

>PLN02723 3-mercaptopyruvate sulfurtransferase

Probab=99.79  E-value=3.5e-19  Score=162.19  Aligned_cols=116  Identities=19%  Similarity=0.292  Sum_probs=94.2

Q ss_pred             cccHHHHHHHhcCCCeEEEEcCChhhh-----------hhCCCCCCeeechhhHHhhhhhHHHHHHhhhhhccccCCCCC
Q 026264           94 SVEAKEALRLQKENNFVILDVRPEAEF-----------KEAHPPGAINVQIYRLIKEWTAWDIARRAAFAFFGIFSGTEE  162 (241)
Q Consensus        94 ~Is~~el~~~l~~~~~~lIDvR~~~Ey-----------~~ghIpGAinip~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~  162 (241)
                      .++.+++.+.++.++.+|||+|++.||           ..||||||+|+|+..+.+..              +.+.   .
T Consensus       191 ~~~~~~v~~~~~~~~~~iiD~R~~~ef~G~~~~~~~~~~~GHIPgAvnip~~~~~~~~--------------~~~~---~  253 (320)
T PLN02723        191 VWTLEQVKKNIEDKTYQHIDARSKARFDGAAPEPRKGIRSGHIPGSKCVPFPQMLDSS--------------QTLL---P  253 (320)
T ss_pred             eecHHHHHHhhcCCCeEEEECCCcccccCCCCCCCCCCcCCcCCCCcccCHHHhcCCC--------------CCCC---C
Confidence            378899999888778899999999998           46999999999998765421              1111   1


Q ss_pred             ChHHHhhhhhcCCCCCCeEEEEcCCCCCCCCCCCCCCchhhHHHHHHHHHHHcCCcceeEccccHHHHHhC-CCCcccC
Q 026264          163 NPEFLQTGVESQLDKDAKIIVACATGGTMKPSQNLPEGQQSRSLIAAYLLVLNGYKNVYHLEGGLYKWFKE-ELPEVSE  240 (241)
Q Consensus       163 ~~~~~~~~~~~~i~~~~~IVvyC~~G~~~~~~~~~~~~~~~rs~~aa~~L~~~Gy~nV~~l~GG~~~W~~~-g~p~~~g  240 (241)
                      ..++.+.+...+++++++||+||++|.              +|..+++.|+.+||+||++|+|||.+|... ++|+++|
T Consensus       254 ~~el~~~~~~~gi~~~~~iv~yC~sG~--------------~A~~~~~~L~~~G~~~v~~YdGs~~eW~~~~~~Pv~~~  318 (320)
T PLN02723        254 AEELKKRFEQEGISLDSPIVASCGTGV--------------TACILALGLHRLGKTDVPVYDGSWTEWGALPDTPVATS  318 (320)
T ss_pred             HHHHHHHHHhcCCCCCCCEEEECCcHH--------------HHHHHHHHHHHcCCCCeeEeCCCHHHHhcCCCCCccCC
Confidence            233333333467899999999999997              999999999999999999999999999986 7899876

>PRK11493 sseA 3-mercaptopyruvate sulfurtransferase; Provisional

Probab=99.79  E-value=4.4e-19  Score=158.55  Aligned_cols=115  Identities=27%  Similarity=0.417  Sum_probs=91.9

Q ss_pred             ccHHHHHHHhcCCCeEEEEcCChhhhh-----------hCCCCCCeeechhhHHhhhhhHHHHHHhhhhhccccCCCCCC
Q 026264           95 VEAKEALRLQKENNFVILDVRPEAEFK-----------EAHPPGAINVQIYRLIKEWTAWDIARRAAFAFFGIFSGTEEN  163 (241)
Q Consensus        95 Is~~el~~~l~~~~~~lIDvR~~~Ey~-----------~ghIpGAinip~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~  163 (241)
                      ++.+++...++.++++|||+|++.||.           .||||||+|+|+..+.+.               +.+   ...
T Consensus       155 ~~~~~v~~~~~~~~~~llD~R~~~e~~G~~~~~~~~~~~GhIpgA~~i~~~~~~~~---------------~~~---~~~  216 (281)
T PRK11493        155 VRLTDVLLASHEKTAQIVDARPAARFNAEVDEPRPGLRRGHIPGALNVPWTELVRE---------------GEL---KTT  216 (281)
T ss_pred             ecHHHHHHhhcCCCcEEEeCCCccceeeeccCCCCCcccccCCCcCCCCHHHhcCC---------------CCc---CCH
Confidence            456677777776678999999999995           699999999999876531               001   112


Q ss_pred             hHHHhhhhhcCCCCCCeEEEEcCCCCCCCCCCCCCCchhhHHHHHHHHHHHcCCcceeEccccHHHHHh-CCCCcccCC
Q 026264          164 PEFLQTGVESQLDKDAKIIVACATGGTMKPSQNLPEGQQSRSLIAAYLLVLNGYKNVYHLEGGLYKWFK-EELPEVSEE  241 (241)
Q Consensus       164 ~~~~~~~~~~~i~~~~~IVvyC~~G~~~~~~~~~~~~~~~rs~~aa~~L~~~Gy~nV~~l~GG~~~W~~-~g~p~~~g~  241 (241)
                      .++.+.+...+++++++||+||++|.              ||..+++.|+.+||+||++|+|||.+|.. .++|+++|.
T Consensus       217 ~~l~~~~~~~g~~~~~~ii~yC~~G~--------------~A~~~~~~l~~~G~~~v~~y~Gs~~eW~~~~~~P~~~~~  281 (281)
T PRK11493        217 DELDAIFFGRGVSFDRPIIASCGSGV--------------TAAVVVLALATLDVPNVKLYDGAWSEWGARADLPVEPAK  281 (281)
T ss_pred             HHHHHHHHhcCCCCCCCEEEECCcHH--------------HHHHHHHHHHHcCCCCceeeCCCHHHHccCCCCCcCCCC
Confidence            23333334467899999999999998              99999999999999999999999999998 699999873

>PRK09629 bifunctional thiosulfate sulfurtransferase/phosphatidylserine decarboxylase; Provisional

Probab=99.79  E-value=7.7e-19  Score=171.94  Aligned_cols=121  Identities=21%  Similarity=0.283  Sum_probs=97.5

Q ss_pred             cccHHHHHHHhcCCCeEEEEcCChhhhhhCCCCCCeeechhhHHhhhhhHHHHHHhhhhhccccCCCCCChHHHhhhhhc
Q 026264           94 SVEAKEALRLQKENNFVILDVRPEAEFKEAHPPGAINVQIYRLIKEWTAWDIARRAAFAFFGIFSGTEENPEFLQTGVES  173 (241)
Q Consensus        94 ~Is~~el~~~l~~~~~~lIDvR~~~Ey~~ghIpGAinip~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  173 (241)
                      .|+++|+.+++++++++|||||++.+|..||||||+|+|+........          ...+++.   ...+|.+.+...
T Consensus        10 lIs~~eL~~~l~~~~vvIIDvR~~~eY~~GHIPGAv~i~~~~~~~~~~----------~~~~~lp---~~~~l~~~l~~l   76 (610)
T PRK09629         10 VIEPNDLLERLDAPELILVDLTSSARYEAGHIRGARFVDPKRTQLGKP----------PAPGLLP---DTADLEQLFGEL   76 (610)
T ss_pred             eecHHHHHHHhcCCCEEEEECCChHHHHhCCCCCcEEcChhHhhccCC----------CCCCCCC---CHHHHHHHHHHc
Confidence            599999999999888999999999999999999999999865322100          0112221   123444444557


Q ss_pred             CCCCCCeEEEEcCCCCCCCCCCCCCCchhhHHHHHHHHHHHcCCcceeEccccHHHHHhCCCCcccC
Q 026264          174 QLDKDAKIIVACATGGTMKPSQNLPEGQQSRSLIAAYLLVLNGYKNVYHLEGGLYKWFKEELPEVSE  240 (241)
Q Consensus       174 ~i~~~~~IVvyC~~G~~~~~~~~~~~~~~~rs~~aa~~L~~~Gy~nV~~l~GG~~~W~~~g~p~~~g  240 (241)
                      +++++++|||||+.|.             .+|.++++.|+.+||++|++|+||+.+|..+|+|++++
T Consensus        77 GI~~d~~VVvYd~~g~-------------~~A~R~~w~L~~~G~~~V~iLdGG~~aW~~ag~p~~~~  130 (610)
T PRK09629         77 GHNPDAVYVVYDDEGG-------------GWAGRFIWLLDVIGHSGYHYLDGGVLAWEAQALPLSTD  130 (610)
T ss_pred             CCCCCCEEEEECCCCC-------------chHHHHHHHHHHcCCCCEEEcCCCHHHHHHcCCccccC
Confidence            8899999999999886             28889999999999999999999999999999998765

>PRK08762 molybdopterin biosynthesis protein MoeB; Validated

Probab=99.79  E-value=7e-19  Score=163.37  Aligned_cols=104  Identities=29%  Similarity=0.414  Sum_probs=90.1

Q ss_pred             cccccHHHHHHHhcCCCeEEEEcCChhhhhhCCCCCCeeechhhHHhhhhhHHHHHHhhhhhccccCCCCCChHHHhhhh
Q 026264           92 VRSVEAKEALRLQKENNFVILDVRPEAEFKEAHPPGAINVQIYRLIKEWTAWDIARRAAFAFFGIFSGTEENPEFLQTGV  171 (241)
Q Consensus        92 ~~~Is~~el~~~l~~~~~~lIDvR~~~Ey~~ghIpGAinip~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  171 (241)
                      +..|+++++.+++++ +.+|||||++.||..||||||+|+|+..+...                           +.   
T Consensus         2 v~~is~~el~~~l~~-~~~ivDvR~~~e~~~ghIpgAi~ip~~~l~~~---------------------------~~---   50 (376)
T PRK08762          2 IREISPAEARARAAQ-GAVLIDVREAHERASGQAEGALRIPRGFLELR---------------------------IE---   50 (376)
T ss_pred             CceeCHHHHHHHHhC-CCEEEECCCHHHHhCCcCCCCEECCHHHHHHH---------------------------Hh---
Confidence            467999999999876 58999999999999999999999998765431                           11   


Q ss_pred             hcCCCCCCeEEEEcCCCCCCCCCCCCCCchhhHHHHHHHHHHHcCCcceeEccccHHHHHhCCCCcccC
Q 026264          172 ESQLDKDAKIIVACATGGTMKPSQNLPEGQQSRSLIAAYLLVLNGYKNVYHLEGGLYKWFKEELPEVSE  240 (241)
Q Consensus       172 ~~~i~~~~~IVvyC~~G~~~~~~~~~~~~~~~rs~~aa~~L~~~Gy~nV~~l~GG~~~W~~~g~p~~~g  240 (241)
                      ...++++++||+||++|.              ||..+++.|+..||+||++|+||+.+|...|+|++++
T Consensus        51 ~~~~~~~~~IvvyC~~G~--------------rs~~aa~~L~~~G~~~v~~l~GG~~~W~~~g~p~~~~  105 (376)
T PRK08762         51 THLPDRDREIVLICASGT--------------RSAHAAATLRELGYTRVASVAGGFSAWKDAGLPLERP  105 (376)
T ss_pred             hhcCCCCCeEEEEcCCCc--------------HHHHHHHHHHHcCCCceEeecCcHHHHHhcCCccccc
Confidence            122478899999999987              9999999999999999999999999999999998865

>cd01531 Acr2p Eukaryotic arsenate resistance proteins are members of the Rhodanese Homology Domain superfamily

Probab=99.78  E-value=9e-19  Score=135.85  Aligned_cols=102  Identities=22%  Similarity=0.335  Sum_probs=79.6

Q ss_pred             cccccHHHHHHHhcC--CCeEEEEcCChhhhhhCCCCCCeeechhhHHhhhhhHHHHHHhhhhhccccCCCCCChHHHhh
Q 026264           92 VRSVEAKEALRLQKE--NNFVILDVRPEAEFKEAHPPGAINVQIYRLIKEWTAWDIARRAAFAFFGIFSGTEENPEFLQT  169 (241)
Q Consensus        92 ~~~Is~~el~~~l~~--~~~~lIDvR~~~Ey~~ghIpGAinip~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  169 (241)
                      ++.|+++++.+++..  ++.+|||||++ ||..||||||+|+|+..+....                       .++.+.
T Consensus         1 ~~~is~~~l~~~~~~~~~~~~iiDvR~~-e~~~~hi~gA~~ip~~~l~~~~-----------------------~~~~~~   56 (113)
T cd01531           1 VSYISPAQLKGWIRNGRPPFQVVDVRDE-DYAGGHIKGSWHYPSTRFKAQL-----------------------NQLVQL   56 (113)
T ss_pred             CCcCCHHHHHHHHHcCCCCEEEEEcCCc-ccCCCcCCCCEecCHHHHhhCH-----------------------HHHHHH
Confidence            357999999999876  35789999999 9999999999999998764321                       122221


Q ss_pred             hhhcCCCCCCeEEEEcCCCCCCCCCCCCCCchhhHHHHHHHHHHH--------cCCcceeEccccHHHHHhC
Q 026264          170 GVESQLDKDAKIIVACATGGTMKPSQNLPEGQQSRSLIAAYLLVL--------NGYKNVYHLEGGLYKWFKE  233 (241)
Q Consensus       170 ~~~~~i~~~~~IVvyC~~G~~~~~~~~~~~~~~~rs~~aa~~L~~--------~Gy~nV~~l~GG~~~W~~~  233 (241)
                         .+.+++++|||||..++             .|+..++..|.+        .||.||++|+||+.+|.+.
T Consensus        57 ---~~~~~~~~iv~yC~~~~-------------~r~~~aa~~l~~~~~~~~~~~G~~~v~~l~gG~~~w~~~  112 (113)
T cd01531          57 ---LSGSKKDTVVFHCALSQ-------------VRGPSAARKFLRYLDEEDLETSKFEVYVLHGGFNAWESS  112 (113)
T ss_pred             ---HhcCCCCeEEEEeecCC-------------cchHHHHHHHHHHHHHhccccCCCeEEEEcChHHHHHhh
Confidence               23477889999998443             288888877654        4999999999999999864

Included in this CD is the Saccharomyces cerevisiae arsenate reductase protein, Acr2p, and other yeast and plant homologs.

>COG0607 PspE Rhodanese-related sulfurtransferase [Inorganic ion transport and metabolism]

Probab=99.78  E-value=1.1e-18  Score=133.08  Aligned_cols=101  Identities=40%  Similarity=0.588  Sum_probs=84.7

Q ss_pred             HHHHHHHhcCCCeEEEEcCChhhhhhCCCCC-CeeechhhHHhhhhhHHHHHHhhhhhccccCCCCCChHHHhhhhhcCC
Q 026264           97 AKEALRLQKENNFVILDVRPEAEFKEAHPPG-AINVQIYRLIKEWTAWDIARRAAFAFFGIFSGTEENPEFLQTGVESQL  175 (241)
Q Consensus        97 ~~el~~~l~~~~~~lIDvR~~~Ey~~ghIpG-Ainip~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i  175 (241)
                      ..........++.+|||||++.||..+|||| ++|+|...+....                           ..   ...
T Consensus         9 ~~~~~~~~~~~~~~liDvR~~~e~~~~~i~~~~~~ip~~~~~~~~---------------------------~~---~~~   58 (110)
T COG0607           9 EDEAALLLAGEDAVLLDVREPEEYERGHIPGAAINIPLSELKAAE---------------------------NL---LEL   58 (110)
T ss_pred             HHHHHHhhccCCCEEEeccChhHhhhcCCCcceeeeecccchhhh---------------------------cc---ccc
Confidence            3334444455689999999999999999999 9999999876521                           00   015


Q ss_pred             CCCCeEEEEcCCCCCCCCCCCCCCchhhHHHHHHHHHHHcCCcceeEccccHHHHHhCCCCcccCC
Q 026264          176 DKDAKIIVACATGGTMKPSQNLPEGQQSRSLIAAYLLVLNGYKNVYHLEGGLYKWFKEELPEVSEE  241 (241)
Q Consensus       176 ~~~~~IVvyC~~G~~~~~~~~~~~~~~~rs~~aa~~L~~~Gy~nV~~l~GG~~~W~~~g~p~~~g~  241 (241)
                      +++++|||||.+|.              ||..++..|+++||++++.+.||+.+|...++|++.++
T Consensus        59 ~~~~~ivv~C~~G~--------------rS~~aa~~L~~~G~~~~~~l~gG~~~w~~~~~~~~~~~  110 (110)
T COG0607          59 PDDDPIVVYCASGV--------------RSAAAAAALKLAGFTNVYNLDGGIDAWKGAGLPLVRGY  110 (110)
T ss_pred             CCCCeEEEEeCCCC--------------ChHHHHHHHHHcCCccccccCCcHHHHHhcCCCcccCC
Confidence            78999999999998              99999999999999988999999999999999998764

>PRK05320 rhodanese superfamily protein; Provisional

Probab=99.77  E-value=2.3e-18  Score=152.52  Aligned_cols=102  Identities=31%  Similarity=0.477  Sum_probs=84.0

Q ss_pred             cccccHHHHHHHhcCC------CeEEEEcCChhhhhhCCCCCCeeechhhHHhhhhhHHHHHHhhhhhccccCCCCCChH
Q 026264           92 VRSVEAKEALRLQKEN------NFVILDVRPEAEFKEAHPPGAINVQIYRLIKEWTAWDIARRAAFAFFGIFSGTEENPE  165 (241)
Q Consensus        92 ~~~Is~~el~~~l~~~------~~~lIDvR~~~Ey~~ghIpGAinip~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  165 (241)
                      ...|+++++.+++++.      +.+|||||++.||..||||||+|+|+..+.+ +                       +.
T Consensus       109 ~~~is~~el~~~l~~~~~~~~~~~vlIDVR~~~E~~~Ghi~GAiniPl~~f~~-~-----------------------~~  164 (257)
T PRK05320        109 APSVDAATLKRWLDQGHDDAGRPVVMLDTRNAFEVDVGTFDGALDYRIDKFTE-F-----------------------PE  164 (257)
T ss_pred             CceeCHHHHHHHHhccccccCCCeEEEECCCHHHHccCccCCCEeCChhHhhh-h-----------------------HH
Confidence            4679999999888652      4899999999999999999999999977643 1                       12


Q ss_pred             HHhhhhhcCCCCCCeEEEEcCCCCCCCCCCCCCCchhhHHHHHHHHHHHcCCcceeEccccHHHHHhC
Q 026264          166 FLQTGVESQLDKDAKIIVACATGGTMKPSQNLPEGQQSRSLIAAYLLVLNGYKNVYHLEGGLYKWFKE  233 (241)
Q Consensus       166 ~~~~~~~~~i~~~~~IVvyC~~G~~~~~~~~~~~~~~~rs~~aa~~L~~~Gy~nV~~l~GG~~~W~~~  233 (241)
                      +++. ....+ ++++||+||++|.              ||..|+..|++.||+||++|+||+.+|.+.
T Consensus       165 ~l~~-~~~~~-kdk~IvvyC~~G~--------------Rs~~Aa~~L~~~Gf~~V~~L~GGi~~w~~~  216 (257)
T PRK05320        165 ALAA-HRADL-AGKTVVSFCTGGI--------------RCEKAAIHMQEVGIDNVYQLEGGILKYFEE  216 (257)
T ss_pred             HHHh-hhhhc-CCCeEEEECCCCH--------------HHHHHHHHHHHcCCcceEEeccCHHHHHHh
Confidence            2222 11223 7889999999998              999999999999999999999999999875

>PRK00142 putative rhodanese-related sulfurtransferase; Provisional

Probab=99.75  E-value=5.5e-18  Score=154.03  Aligned_cols=102  Identities=26%  Similarity=0.435  Sum_probs=86.9

Q ss_pred             cccccHHHHHHHhcCCCeEEEEcCChhhhhhCCCCCCeeechhhHHhhhhhHHHHHHhhhhhccccCCCCCChHHHhhhh
Q 026264           92 VRSVEAKEALRLQKENNFVILDVRPEAEFKEAHPPGAINVQIYRLIKEWTAWDIARRAAFAFFGIFSGTEENPEFLQTGV  171 (241)
Q Consensus        92 ~~~Is~~el~~~l~~~~~~lIDvR~~~Ey~~ghIpGAinip~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  171 (241)
                      ...|+++++.+++++++++|||||++.||..||||||+|+|+..+.+.                        +..+++  
T Consensus       111 ~~~is~~el~~~l~~~~~vlIDVR~~~E~~~GhI~GAi~ip~~~~~~~------------------------~~~l~~--  164 (314)
T PRK00142        111 GTYLKPKEVNELLDDPDVVFIDMRNDYEYEIGHFENAIEPDIETFREF------------------------PPWVEE--  164 (314)
T ss_pred             CcccCHHHHHHHhcCCCeEEEECCCHHHHhcCcCCCCEeCCHHHhhhh------------------------HHHHHH--
Confidence            357999999999988889999999999999999999999999876531                        112211  


Q ss_pred             hcCCCCCCeEEEEcCCCCCCCCCCCCCCchhhHHHHHHHHHHHcCCcceeEccccHHHHHhC
Q 026264          172 ESQLDKDAKIIVACATGGTMKPSQNLPEGQQSRSLIAAYLLVLNGYKNVYHLEGGLYKWFKE  233 (241)
Q Consensus       172 ~~~i~~~~~IVvyC~~G~~~~~~~~~~~~~~~rs~~aa~~L~~~Gy~nV~~l~GG~~~W~~~  233 (241)
                      .....++++||+||++|.              ||..++.+|+..||+||++|+||+.+|.+.
T Consensus       165 ~~~~~kdk~IvvyC~~G~--------------Rs~~aa~~L~~~Gf~~V~~L~GGi~~w~~~  212 (314)
T PRK00142        165 NLDPLKDKKVVMYCTGGI--------------RCEKASAWMKHEGFKEVYQLEGGIITYGED  212 (314)
T ss_pred             hcCCCCcCeEEEECCCCc--------------HHHHHHHHHHHcCCCcEEEecchHHHHHHh
Confidence            123558899999999998              999999999999999999999999999875

>TIGR02981 phageshock_pspE phage shock operon rhodanese PspE

Probab=99.74  E-value=1e-17  Score=128.48  Aligned_cols=81  Identities=23%  Similarity=0.369  Sum_probs=68.3

Q ss_pred             CCeEEEEcCChhhhhhCCCCCCeeechhhHHhhhhhHHHHHHhhhhhccccCCCCCChHHHhhhhhcCCCCCCeEEEEcC
Q 026264          107 NNFVILDVRPEAEFKEAHPPGAINVQIYRLIKEWTAWDIARRAAFAFFGIFSGTEENPEFLQTGVESQLDKDAKIIVACA  186 (241)
Q Consensus       107 ~~~~lIDvR~~~Ey~~ghIpGAinip~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~IVvyC~  186 (241)
                      ....+||+|++.||..||||||+|+|+.++....                              .....+++++|||||.
T Consensus        17 ~~~~lIDvR~~~ef~~ghIpgAinip~~~l~~~l------------------------------~~~~~~~~~~vvlyC~   66 (101)
T TIGR02981        17 AAEHWIDVRIPEQYQQEHIQGAINIPLKEIKEHI------------------------------ATAVPDKNDTVKLYCN   66 (101)
T ss_pred             cCCEEEECCCHHHHhcCCCCCCEECCHHHHHHHH------------------------------HHhCCCCCCeEEEEeC
Confidence            3677999999999999999999999998764321                              1122457789999999


Q ss_pred             CCCCCCCCCCCCCchhhHHHHHHHHHHHcCCcceeEccccHHHHHh
Q 026264          187 TGGTMKPSQNLPEGQQSRSLIAAYLLVLNGYKNVYHLEGGLYKWFK  232 (241)
Q Consensus       187 ~G~~~~~~~~~~~~~~~rs~~aa~~L~~~Gy~nV~~l~GG~~~W~~  232 (241)
                      +|.              +|..++..|.+.||++|.++ ||+.+|.-
T Consensus        67 ~G~--------------rS~~aa~~L~~~G~~~v~~~-GG~~~~~~   97 (101)
T TIGR02981        67 AGR--------------QSGMAKDILLDMGYTHAENA-GGIKDIAM   97 (101)
T ss_pred             CCH--------------HHHHHHHHHHHcCCCeEEec-CCHHHhhh
Confidence            998              99999999999999999985 99999974

Members of this very narrowly defined protein family are proteins active as rhodanese (EC 2.8.1.1) and found in the extended variants of the phage shock protein (psp operon) in Escherichia coli and a few closely related species. Note that the designation phage shock protein PspE has been applied, incorrectly, in many instances where the genome lacks the phage shock regulon entirely.

>PRK09629 bifunctional thiosulfate sulfurtransferase/phosphatidylserine decarboxylase; Provisional

Probab=99.73  E-value=1.1e-17  Score=163.80  Aligned_cols=116  Identities=18%  Similarity=0.235  Sum_probs=93.4

Q ss_pred             cccHHHHHHHhcCCCeEEEEcCChhhhh--------hCCCCCCeeechhhHHhhhhhHHHHHHhhhhhccccCCCCCChH
Q 026264           94 SVEAKEALRLQKENNFVILDVRPEAEFK--------EAHPPGAINVQIYRLIKEWTAWDIARRAAFAFFGIFSGTEENPE  165 (241)
Q Consensus        94 ~Is~~el~~~l~~~~~~lIDvR~~~Ey~--------~ghIpGAinip~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  165 (241)
                      .++.+++.+.+++++++|||+|++.||.        .||||||+|+|+..+.+..              +.+..   .++
T Consensus       148 ~v~~e~v~~~l~~~~~~iIDaR~~~ef~G~~~~~~r~GHIPGAvnip~~~~~~~~--------------~~lk~---~~e  210 (610)
T PRK09629        148 TATREYLQSRLGAADLAIWDARAPTEYSGEKVVAAKGGHIPGAVNFEWTAGMDKA--------------RNLRI---RQD  210 (610)
T ss_pred             cccHHHHHHhhCCCCcEEEECCCccccCCcccccccCCCCCCCeecCHHHhcCCC--------------CCCCC---HHH
Confidence            5789999999987789999999999995        7999999999997654321              11111   122


Q ss_pred             HHhhhhhcCCCCCCeEEEEcCCCCCCCCCCCCCCchhhHHHHHHHHHHHcCCcceeEccccHHHHHhC-CCCcccC
Q 026264          166 FLQTGVESQLDKDAKIIVACATGGTMKPSQNLPEGQQSRSLIAAYLLVLNGYKNVYHLEGGLYKWFKE-ELPEVSE  240 (241)
Q Consensus       166 ~~~~~~~~~i~~~~~IVvyC~~G~~~~~~~~~~~~~~~rs~~aa~~L~~~Gy~nV~~l~GG~~~W~~~-g~p~~~g  240 (241)
                      +.+.+...+++++++||+||++|.              +|..+++.|+.+||+||++|+|||.+|... ++|+++.
T Consensus       211 l~~~~~~~Gi~~~~~VVvYC~sG~--------------rAa~~~~~L~~lG~~~V~~YdGsw~eW~~~~~lPv~~~  272 (610)
T PRK09629        211 MPEILRDLGITPDKEVITHCQTHH--------------RSGFTYLVAKALGYPRVKAYAGSWGEWGNHPDTPVEVP  272 (610)
T ss_pred             HHHHHHHcCCCCCCCEEEECCCCh--------------HHHHHHHHHHHcCCCCcEEeCCCHHHHhCCCCCccccC
Confidence            222223467899999999999997              999999999999999999999999999975 7898863

>cd01443 Cdc25_Acr2p Cdc25 enzymes are members of the Rhodanese Homology Domain (RHOD) superfamily

Probab=99.73  E-value=1.8e-17  Score=128.68  Aligned_cols=99  Identities=23%  Similarity=0.435  Sum_probs=74.3

Q ss_pred             ccccHHHHHHHhcCC------CeEEEEcCChhhhhhCCCCCCeeechhhHHhhhhhHHHHHHhhhhhccccCCCCCChHH
Q 026264           93 RSVEAKEALRLQKEN------NFVILDVRPEAEFKEAHPPGAINVQIYRLIKEWTAWDIARRAAFAFFGIFSGTEENPEF  166 (241)
Q Consensus        93 ~~Is~~el~~~l~~~------~~~lIDvR~~~Ey~~ghIpGAinip~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  166 (241)
                      +.|+++++.++++++      +.+|||||++ ||..||||||+|+|+..+....                       ++.
T Consensus         2 ~~is~~el~~~l~~~~~~~~~~~~iiDvR~~-ef~~ghipgAi~ip~~~~~~~~-----------------------~~~   57 (113)
T cd01443           2 KYISPEELVALLENSDSNAGKDFVVVDLRRD-DYEGGHIKGSINLPAQSCYQTL-----------------------PQV   57 (113)
T ss_pred             cccCHHHHHHHHhCCccccCCcEEEEECCch-hcCCCcccCceecchhHHHHHH-----------------------HHH
Confidence            468999999999875      5899999999 9999999999999998754321                       111


Q ss_pred             HhhhhhcCCCCCCeEEEEcCCCCCCCCCCCCCCchhhHHHHHHHHHHH----cCC--cceeEccccHHHHH
Q 026264          167 LQTGVESQLDKDAKIIVACATGGTMKPSQNLPEGQQSRSLIAAYLLVL----NGY--KNVYHLEGGLYKWF  231 (241)
Q Consensus       167 ~~~~~~~~i~~~~~IVvyC~~G~~~~~~~~~~~~~~~rs~~aa~~L~~----~Gy--~nV~~l~GG~~~W~  231 (241)
                      ++.   ....+..+||+||.+++.             |+..++.+|..    .||  .++++|+||+.+|.
T Consensus        58 ~~~---~~~~~~~~iv~~C~~~g~-------------rs~~a~~~l~~~l~~~G~~~~~v~~l~GG~~~w~  112 (113)
T cd01443          58 YAL---FSLAGVKLAIFYCGSSQG-------------RGPRAARWFADYLRKVGESLPKSYILTGGIKAWY  112 (113)
T ss_pred             HHH---hhhcCCCEEEEECCCCCc-------------ccHHHHHHHHHHHhccCCCCCeEEEECChhhhhc
Confidence            111   112355789999997542             78777766543    475  68999999999995

Also included in this CD are eukaryotic arsenate resistance proteins such as Saccharomyces cerevisiae Acr2p and similar proteins. Cdc25 phosphatases activate the cell division kinases throughout the cell cycle progression. Cdc25 phosphatases dephosphorylate phosphotyrosine and phosphothreonine residues, in order to activate their Cdk/cyclin substrates. The Cdc25 and Acr2p RHOD domains have the signature motif (H/YCxxxxxR).

>COG2897 SseA Rhodanese-related sulfurtransferase [Inorganic ion transport and metabolism]

Probab=99.72  E-value=3.9e-17  Score=146.13  Aligned_cols=122  Identities=24%  Similarity=0.253  Sum_probs=99.5

Q ss_pred             ccccHHHHHHHhcCC-----CeEEEEcCCh--hhhhhCCCCCCeeechhhHHhhhhhHHHHHHhhhhhccccCCCCCChH
Q 026264           93 RSVEAKEALRLQKEN-----NFVILDVRPE--AEFKEAHPPGAINVQIYRLIKEWTAWDIARRAAFAFFGIFSGTEENPE  165 (241)
Q Consensus        93 ~~Is~~el~~~l~~~-----~~~lIDvR~~--~Ey~~ghIpGAinip~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  165 (241)
                      ..|+++++.+.+..+     +..+++++..  .+|.++|||||++++++........          ..++   .++...
T Consensus        11 ~lVs~~wl~~~l~~~~~~~~d~~~~~~~~~~~~~Y~~~HIPGAv~~d~~~~~~~~~~----------~~~~---lp~~e~   77 (285)
T COG2897          11 FLVSPDWLAENLDDPAVVIVDARIILPDPDDAEEYLEGHIPGAVFFDWEADLSDPVP----------LPHM---LPSPEQ   77 (285)
T ss_pred             eEEcHHHHHhhccccccccCceEEEeCCcchHHHHHhccCCCCEecCHHHhhcCCCC----------CCCC---CCCHHH
Confidence            469999999999865     5666666665  8999999999999999987653210          1122   233456


Q ss_pred             HHhhhhhcCCCCCCeEEEEcCCCCCCCCCCCCCCchhhHHHHHHHHHHHcCCcceeEccccHHHHHhCCCCcccC
Q 026264          166 FLQTGVESQLDKDAKIIVACATGGTMKPSQNLPEGQQSRSLIAAYLLVLNGYKNVYHLEGGLYKWFKEELPEVSE  240 (241)
Q Consensus       166 ~~~~~~~~~i~~~~~IVvyC~~G~~~~~~~~~~~~~~~rs~~aa~~L~~~Gy~nV~~l~GG~~~W~~~g~p~~~g  240 (241)
                      |.+.+...+|..|.+||+|+..+.             ..|.+++|.|+.+|++||++|+||+.+|.++|+|++++
T Consensus        78 fa~~~~~~GI~~d~tVVvYdd~~~-------------~~A~ra~W~l~~~Gh~~V~iLdGG~~~W~~~g~p~~~~  139 (285)
T COG2897          78 FAKLLGELGIRNDDTVVVYDDGGG-------------FFAARAWWLLRYLGHENVRILDGGLPAWKAAGLPLETE  139 (285)
T ss_pred             HHHHHHHcCCCCCCEEEEECCCCC-------------eehHHHHHHHHHcCCCceEEecCCHHHHHHcCCCccCC
Confidence            777667799999999999999887             38999999999999999999999999999999999865

>PRK10287 thiosulfate:cyanide sulfurtransferase; Provisional

Probab=99.72  E-value=2.5e-17  Score=127.07  Aligned_cols=81  Identities=25%  Similarity=0.376  Sum_probs=67.8

Q ss_pred             CCeEEEEcCChhhhhhCCCCCCeeechhhHHhhhhhHHHHHHhhhhhccccCCCCCChHHHhhhhhcCCCCCCeEEEEcC
Q 026264          107 NNFVILDVRPEAEFKEAHPPGAINVQIYRLIKEWTAWDIARRAAFAFFGIFSGTEENPEFLQTGVESQLDKDAKIIVACA  186 (241)
Q Consensus       107 ~~~~lIDvR~~~Ey~~ghIpGAinip~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~IVvyC~  186 (241)
                      .+-+|||+|++.||..||||||+|+|+..+...                           +   .....+++++||+||.
T Consensus        19 ~~~~lIDvR~~~ef~~ghIpGAiniP~~~l~~~---------------------------l---~~l~~~~~~~IVlyC~   68 (104)
T PRK10287         19 AAEHWIDVRVPEQYQQEHVQGAINIPLKEVKER---------------------------I---ATAVPDKNDTVKLYCN   68 (104)
T ss_pred             CCCEEEECCCHHHHhcCCCCccEECCHHHHHHH---------------------------H---HhcCCCCCCeEEEEeC
Confidence            356799999999999999999999999865431                           1   1123466789999999


Q ss_pred             CCCCCCCCCCCCCchhhHHHHHHHHHHHcCCcceeEccccHHHHHh
Q 026264          187 TGGTMKPSQNLPEGQQSRSLIAAYLLVLNGYKNVYHLEGGLYKWFK  232 (241)
Q Consensus       187 ~G~~~~~~~~~~~~~~~rs~~aa~~L~~~Gy~nV~~l~GG~~~W~~  232 (241)
                      +|.              +|..++..|.+.||++|++ .||+.+|.-
T Consensus        69 ~G~--------------rS~~aa~~L~~~G~~~v~~-~GG~~~~~~   99 (104)
T PRK10287         69 AGR--------------QSGQAKEILSEMGYTHAEN-AGGLKDIAM   99 (104)
T ss_pred             CCh--------------HHHHHHHHHHHcCCCeEEe-cCCHHHHhh
Confidence            997              9999999999999999977 699999973

>PRK07878 molybdopterin biosynthesis-like protein MoeZ; Validated

Probab=99.72  E-value=2.8e-17  Score=153.52  Aligned_cols=102  Identities=26%  Similarity=0.433  Sum_probs=87.8

Q ss_pred             ccccccHHHHHHHhcCC-CeEEEEcCChhhhhhCCCCCCeeechhhHHhhhhhHHHHHHhhhhhccccCCCCCChHHHhh
Q 026264           91 RVRSVEAKEALRLQKEN-NFVILDVRPEAEFKEAHPPGAINVQIYRLIKEWTAWDIARRAAFAFFGIFSGTEENPEFLQT  169 (241)
Q Consensus        91 ~~~~Is~~el~~~l~~~-~~~lIDvR~~~Ey~~ghIpGAinip~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  169 (241)
                      ....|+++++.++++++ +++|||||++.||..||||||+|+|+..+....                             
T Consensus       285 ~~~~Is~~el~~~l~~~~~~~lIDvR~~~ef~~ghIpGAinip~~~l~~~~-----------------------------  335 (392)
T PRK07878        285 AGSTITPRELKEWLDSGKKIALIDVREPVEWDIVHIPGAQLIPKSEILSGE-----------------------------  335 (392)
T ss_pred             CCCccCHHHHHHHHhCCCCeEEEECCCHHHHhcCCCCCCEEcChHHhcchh-----------------------------
Confidence            34679999999998764 578999999999999999999999998764311                             


Q ss_pred             hhhcCCCCCCeEEEEcCCCCCCCCCCCCCCchhhHHHHHHHHHHHcCCcceeEccccHHHHHhCCCC
Q 026264          170 GVESQLDKDAKIIVACATGGTMKPSQNLPEGQQSRSLIAAYLLVLNGYKNVYHLEGGLYKWFKEELP  236 (241)
Q Consensus       170 ~~~~~i~~~~~IVvyC~~G~~~~~~~~~~~~~~~rs~~aa~~L~~~Gy~nV~~l~GG~~~W~~~g~p  236 (241)
                       ....++++++||+||++|.              ||..++..|++.||++|++|+||+.+|..++.|
T Consensus       336 -~~~~l~~d~~iVvyC~~G~--------------rS~~aa~~L~~~G~~~V~~L~GG~~~W~~~~~~  387 (392)
T PRK07878        336 -ALAKLPQDRTIVLYCKTGV--------------RSAEALAALKKAGFSDAVHLQGGVVAWAKQVDP  387 (392)
T ss_pred             -HHhhCCCCCcEEEEcCCCh--------------HHHHHHHHHHHcCCCcEEEecCcHHHHHHhcCC
Confidence             1234688999999999997              999999999999999999999999999988654

>TIGR03167 tRNA_sel_U_synt tRNA 2-selenouridine synthase

Probab=99.69  E-value=5.6e-17  Score=147.20  Aligned_cols=111  Identities=26%  Similarity=0.307  Sum_probs=80.9

Q ss_pred             CeEEEEcCChhhhhhCCCCCCeeechhhHHhhh--------hhHHHHHHhhhhhccccCCCCCChHHHhhhhhcCCCCCC
Q 026264          108 NFVILDVRPEAEFKEAHPPGAINVQIYRLIKEW--------TAWDIARRAAFAFFGIFSGTEENPEFLQTGVESQLDKDA  179 (241)
Q Consensus       108 ~~~lIDvR~~~Ey~~ghIpGAinip~~~l~~~~--------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~  179 (241)
                      +.+|||||++.||.+||||||+|+|+....+..        .+...+++.|+.+.+.     +.++++++ .....+++.
T Consensus         2 ~~~liDVRsp~Ef~~ghipgAiniPl~~~~er~~vgt~ykq~g~~~A~~lg~~~v~~-----~l~~~i~~-~~~~~~~~~   75 (311)
T TIGR03167         2 FDPLIDVRSPAEFAEGHLPGAINLPLLNDEERAEVGTLYKQVGPFAAIKLGLALVSP-----NLAAHVEQ-WRAFADGPP   75 (311)
T ss_pred             CCEEEECCCHHHHhcCCCcCCEecccccchhhhhhhhhhhcccHHHHHHHhHhhhhH-----HHHHHHHH-HHhhcCCCC
Confidence            468999999999999999999999996543221        1112233334333331     34456655 444556666


Q ss_pred             eEEEEcC-CCCCCCCCCCCCCchhhHHHHHHHHHHHcCCcceeEccccHHHHHhCCCCccc
Q 026264          180 KIIVACA-TGGTMKPSQNLPEGQQSRSLIAAYLLVLNGYKNVYHLEGGLYKWFKEELPEVS  239 (241)
Q Consensus       180 ~IVvyC~-~G~~~~~~~~~~~~~~~rs~~aa~~L~~~Gy~nV~~l~GG~~~W~~~g~p~~~  239 (241)
                      +||+||. +|.              ||..++++|+.+|| +|++|+||+.+|...+.+...
T Consensus        76 ~vvvyC~~gG~--------------RS~~aa~~L~~~G~-~v~~L~GG~~aw~~~~~~~~~  121 (311)
T TIGR03167        76 QPLLYCWRGGM--------------RSGSLAWLLAQIGF-RVPRLEGGYKAYRRFVIDQLE  121 (311)
T ss_pred             cEEEEECCCCh--------------HHHHHHHHHHHcCC-CEEEecChHHHHHHhhhhhhh
Confidence            7999996 454              99999999999999 699999999999998876543

The Escherichia coli YbbB protein was shown to encode a selenophosphate-dependent tRNA 2-selenouridine synthase, essential for modification of some tRNAs to replace a sulfur atom with selenium. This enzyme works with SelD, the selenium donor protein, which also acts in selenocysteine incorporation. Although the members of this protein family show a fairly deep split, sequences from both sides of the split are supported by co-occurence with, and often proximity to, the selD gene.

>PRK07411 hypothetical protein; Validated

Probab=99.67  E-value=2.5e-16  Score=147.12  Aligned_cols=106  Identities=25%  Similarity=0.417  Sum_probs=86.9

Q ss_pred             hccccccHHHHHHHhcCC--CeEEEEcCChhhhhhCCCCCCeeechhhHHhhhhhHHHHHHhhhhhccccCCCCCChHHH
Q 026264           90 KRVRSVEAKEALRLQKEN--NFVILDVRPEAEFKEAHPPGAINVQIYRLIKEWTAWDIARRAAFAFFGIFSGTEENPEFL  167 (241)
Q Consensus        90 ~~~~~Is~~el~~~l~~~--~~~lIDvR~~~Ey~~ghIpGAinip~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  167 (241)
                      ..+..|+++++.++++.+  +++|||||++.||..||||||+|+|+.++....                         ..
T Consensus       279 ~~~~~Is~~el~~~l~~~~~~~vlIDVR~~~E~~~ghIpGAiniP~~~l~~~~-------------------------~~  333 (390)
T PRK07411        279 AEIPEMTVTELKALLDSGADDFVLIDVRNPNEYEIARIPGSVLVPLPDIENGP-------------------------GV  333 (390)
T ss_pred             cccCccCHHHHHHHHhCCCCCeEEEECCCHHHhccCcCCCCEEccHHHhhccc-------------------------ch
Confidence            345689999999988754  579999999999999999999999998764310                         00


Q ss_pred             hhhhhcCCCCCCeEEEEcCCCCCCCCCCCCCCchhhHHHHHHHHHHHcCCcceeEccccHHHHHhCCCCc
Q 026264          168 QTGVESQLDKDAKIIVACATGGTMKPSQNLPEGQQSRSLIAAYLLVLNGYKNVYHLEGGLYKWFKEELPE  237 (241)
Q Consensus       168 ~~~~~~~i~~~~~IVvyC~~G~~~~~~~~~~~~~~~rs~~aa~~L~~~Gy~nV~~l~GG~~~W~~~g~p~  237 (241)
                      +  ....++++++||+||.+|.              ||..++..|++.||++ +.|+||+.+|.++..|.
T Consensus       334 ~--~l~~l~~d~~IVvyC~~G~--------------RS~~aa~~L~~~G~~~-~~l~GG~~~W~~~~~p~  386 (390)
T PRK07411        334 E--KVKELLNGHRLIAHCKMGG--------------RSAKALGILKEAGIEG-TNVKGGITAWSREVDPS  386 (390)
T ss_pred             H--HHhhcCCCCeEEEECCCCH--------------HHHHHHHHHHHcCCCe-EEecchHHHHHHhcCCC
Confidence            1  1123567899999999998              9999999999999985 58999999999887664

>PRK05597 molybdopterin biosynthesis protein MoeB; Validated

Probab=99.66  E-value=3.3e-16  Score=144.56  Aligned_cols=96  Identities=26%  Similarity=0.451  Sum_probs=80.8

Q ss_pred             cccccHHHHHHHhcCCCeEEEEcCChhhhhhCCCCCCeeechhhHHhhhhhHHHHHHhhhhhccccCCCCCChHHHhhhh
Q 026264           92 VRSVEAKEALRLQKENNFVILDVRPEAEFKEAHPPGAINVQIYRLIKEWTAWDIARRAAFAFFGIFSGTEENPEFLQTGV  171 (241)
Q Consensus        92 ~~~Is~~el~~~l~~~~~~lIDvR~~~Ey~~ghIpGAinip~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  171 (241)
                      ...++++++.+..  .+.+|||||++.||..||||||+|+|+..+...+                              .
T Consensus       260 ~~~i~~~~~~~~~--~~~~IIDVR~~~ef~~ghIpgAinip~~~l~~~~------------------------------~  307 (355)
T PRK05597        260 GEVLDVPRVSALP--DGVTLIDVREPSEFAAYSIPGAHNVPLSAIREGA------------------------------N  307 (355)
T ss_pred             ccccCHHHHHhcc--CCCEEEECCCHHHHccCcCCCCEEeCHHHhhhcc------------------------------c
Confidence            4568888888543  2679999999999999999999999998765421                              1


Q ss_pred             hcCCCCCCeEEEEcCCCCCCCCCCCCCCchhhHHHHHHHHHHHcCCcceeEccccHHHHHhC
Q 026264          172 ESQLDKDAKIIVACATGGTMKPSQNLPEGQQSRSLIAAYLLVLNGYKNVYHLEGGLYKWFKE  233 (241)
Q Consensus       172 ~~~i~~~~~IVvyC~~G~~~~~~~~~~~~~~~rs~~aa~~L~~~Gy~nV~~l~GG~~~W~~~  233 (241)
                      ...++++++||+||+.|.              +|..+++.|++.||+||++|+||+.+|.++
T Consensus       308 ~~~~~~~~~IvvyC~~G~--------------rS~~Aa~~L~~~G~~nV~~L~GGi~~W~~~  355 (355)
T PRK05597        308 PPSVSAGDEVVVYCAAGV--------------RSAQAVAILERAGYTGMSSLDGGIEGWLDS  355 (355)
T ss_pred             cccCCCCCeEEEEcCCCH--------------HHHHHHHHHHHcCCCCEEEecCcHHHHhhC
Confidence            123678899999999987              999999999999999999999999999753

>PRK11784 tRNA 2-selenouridine synthase; Provisional

Probab=99.65  E-value=2.9e-16  Score=144.43  Aligned_cols=125  Identities=24%  Similarity=0.281  Sum_probs=82.5

Q ss_pred             cHHHHHHHhcCCCeEEEEcCChhhhhhCCCCCCeeechhhHHhhhhhHHHHHH----hhhhhccccCCCCCChHHHhhhh
Q 026264           96 EAKEALRLQKENNFVILDVRPEAEFKEAHPPGAINVQIYRLIKEWTAWDIARR----AAFAFFGIFSGTEENPEFLQTGV  171 (241)
Q Consensus        96 s~~el~~~l~~~~~~lIDvR~~~Ey~~ghIpGAinip~~~l~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~  171 (241)
                      +..++..++. ++.+|||||++.||.+||||||+|+|+....+...-..+.++    .+...++.+.. .+.++.+.+ .
T Consensus         4 ~~~~~~~~~~-~~~~lIDVRsp~Ef~~ghIpgAiniPl~~~~er~~vgt~Ykq~g~~~a~~lg~~lv~-~~l~~~~~~-~   80 (345)
T PRK11784          4 DAQDFRALFL-NDTPLIDVRSPIEFAEGHIPGAINLPLLNDEERAEVGTCYKQQGQFAAIALGHALVA-GNIAAHREE-A   80 (345)
T ss_pred             cHHHHHHHHh-CCCEEEECCCHHHHhcCCCCCeeeCCCCChhHHHhhchhhcccCHHHHHHhhhhhcc-hhHHHHHHH-H
Confidence            3456666654 478999999999999999999999999755432111111111    11112222211 122333333 1


Q ss_pred             hcCC-CCCCeEEEEcCCCCCCCCCCCCCCchhhHHHHHHHHHHHcCCcceeEccccHHHHHhCCCCc
Q 026264          172 ESQL-DKDAKIIVACATGGTMKPSQNLPEGQQSRSLIAAYLLVLNGYKNVYHLEGGLYKWFKEELPE  237 (241)
Q Consensus       172 ~~~i-~~~~~IVvyC~~G~~~~~~~~~~~~~~~rs~~aa~~L~~~Gy~nV~~l~GG~~~W~~~g~p~  237 (241)
                      .... .++++||+||..|+             .||..++++|...|| +|++|+||+.+|...+++.
T Consensus        81 ~~~~~~~~~~ivvyC~rgG-------------~RS~~aa~~L~~~G~-~v~~L~GG~~awr~~~~~~  133 (345)
T PRK11784         81 WADFPRANPRGLLYCWRGG-------------LRSGSVQQWLKEAGI-DVPRLEGGYKAYRRFVIDT  133 (345)
T ss_pred             HHhcccCCCeEEEEECCCC-------------hHHHHHHHHHHHcCC-CcEEEcCCHHHHHHhhHHH
Confidence            1222 37889999996443             299999999999999 5999999999999877644

>cd01446 DSP_MapKP N-terminal regulatory rhodanese domain of dual specificity phosphatases (DSP), such as Mapk Phosphatase

Probab=99.62  E-value=5.3e-15  Score=117.65  Aligned_cols=122  Identities=19%  Similarity=0.226  Sum_probs=79.4

Q ss_pred             cccHHHHHHHhcC--CCeEEEEcCChhhhhhCCCCCCeeechhhHHhhhhhHHHHHHhhhhhccccCCCCCChHHHhhhh
Q 026264           94 SVEAKEALRLQKE--NNFVILDVRPEAEFKEAHPPGAINVQIYRLIKEWTAWDIARRAAFAFFGIFSGTEENPEFLQTGV  171 (241)
Q Consensus        94 ~Is~~el~~~l~~--~~~~lIDvR~~~Ey~~ghIpGAinip~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  171 (241)
                      .|+++++.+++++  ++.+|||||+..+|..||||||+|+|+..+..........         ........++..+.  
T Consensus         1 ~is~~~l~~~l~~~~~~~~iiDvR~~~~~~~~hI~~ai~i~~~~~~~~~~~~~~~---------~~~~~~~~~~~~~~--   69 (132)
T cd01446           1 TIDCAWLAALLREGGERLLLLDCRPFLEYSSSHIRGAVNVCCPTILRRRLQGGKI---------LLQQLLSCPEDRDR--   69 (132)
T ss_pred             CcCHHHHHHHHhcCCCCEEEEECCCHHHHhhCcccCcEecChHHHHHHhhcccch---------hhhhhcCCHHHHHH--
Confidence            3789999999975  4799999999999999999999999998754321000000         00000011122121  


Q ss_pred             hcCCCCCCeEEEEcCCCCCCC-CCCCCCCchhhHHHHHHHHHHH--cCCcceeEccccHHHHHhC
Q 026264          172 ESQLDKDAKIIVACATGGTMK-PSQNLPEGQQSRSLIAAYLLVL--NGYKNVYHLEGGLYKWFKE  233 (241)
Q Consensus       172 ~~~i~~~~~IVvyC~~G~~~~-~~~~~~~~~~~rs~~aa~~L~~--~Gy~nV~~l~GG~~~W~~~  233 (241)
                      .... ++++|||||..+..+. ..+      ..++..++..|..  .|+.+|++|+||+.+|.+.
T Consensus        70 l~~~-~~~~VVvYd~~~~~~~~~~~------~~~~~~~~~~l~~~~~~~~~v~~L~GG~~~w~~~  127 (132)
T cd01446          70 LRRG-ESLAVVVYDESSSDRERLRE------DSTAESVLGKLLRKLQEGCSVYLLKGGFEQFSSE  127 (132)
T ss_pred             HhcC-CCCeEEEEeCCCcchhhccc------cchHHHHHHHHHHhcCCCceEEEEcchHHHHHhh
Confidence            1122 6789999999886210 000      1246667777777  3678899999999999763

This domain is believed to determine substrate specificity by binding the substrate, such as ERK2, and activating the C-terminal catalytic domain by inducing a conformational change. This domain has homology to the Rhodanese Homology Domain.

>COG1054 Predicted sulfurtransferase [General function prediction only]

Probab=99.59  E-value=1.6e-15  Score=134.89  Aligned_cols=139  Identities=26%  Similarity=0.399  Sum_probs=112.8

Q ss_pred             CceEEeecCchhhhHhhhccCCCCCCccccCCCCCCCCCCCccchHHHHHHHhhhccccccHHHHHHHhcCCCeEEEEcC
Q 026264           36 TTICCLTVRSFTFSRRRLSSQSVPRGLIIQNAATKPAKSPAEEDWKTKRELLLQKRVRSVEAKEALRLQKENNFVILDVR  115 (241)
Q Consensus        36 ~~~~~~~~~s~~~~~~~~~~~~~~~g~~~~~~~~~p~~~~~~~~~~~~~~~l~~~~~~~Is~~el~~~l~~~~~~lIDvR  115 (241)
                      ++-.+....+|..++.|++...++.|+.-   ...|....+                .+|+|+++.+++.+++.++||+|
T Consensus        75 ~K~s~~~~~pF~r~kVk~kkEIV~lg~~d---dv~p~~~vG----------------~yl~p~~wn~~l~D~~~vviDtR  135 (308)
T COG1054          75 FKISEADEKPFWRLKVKLKKEIVALGVED---DVDPLENVG----------------TYLSPKDWNELLSDPDVVVIDTR  135 (308)
T ss_pred             eeeccccCCCcceEEEeehhhheecCCCC---CcCcccccc----------------CccCHHHHHHHhcCCCeEEEEcC
Confidence            34444566889999999999999999874   112222212                47999999999999999999999


Q ss_pred             ChhhhhhCCCCCCeeechhhHHhhhhhHHHHHHhhhhhccccCCCCCChHHHhhhhhcCCCCCCeEEEEcCCCCCCCCCC
Q 026264          116 PEAEFKEAHPPGAINVQIYRLIKEWTAWDIARRAAFAFFGIFSGTEENPEFLQTGVESQLDKDAKIIVACATGGTMKPSQ  195 (241)
Q Consensus       116 ~~~Ey~~ghIpGAinip~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~IVvyC~~G~~~~~~~  195 (241)
                      ...||+.||..||++.+...+.+                        .|.++++ ... .-++++|+.||.+|.      
T Consensus       136 N~YE~~iG~F~gAv~p~~~tFre------------------------fP~~v~~-~~~-~~~~KkVvmyCTGGI------  183 (308)
T COG1054         136 NDYEVAIGHFEGAVEPDIETFRE------------------------FPAWVEE-NLD-LLKDKKVVMYCTGGI------  183 (308)
T ss_pred             cceeEeeeeecCccCCChhhhhh------------------------hHHHHHH-HHH-hccCCcEEEEcCCce------
Confidence            99999999999999999988764                        4556655 222 234559999999999      


Q ss_pred             CCCCchhhHHHHHHHHHHHcCCcceeEccccHHHHHhC
Q 026264          196 NLPEGQQSRSLIAAYLLVLNGYKNVYHLEGGLYKWFKE  233 (241)
Q Consensus       196 ~~~~~~~~rs~~aa~~L~~~Gy~nV~~l~GG~~~W~~~  233 (241)
                              |+..+..+|+..||++|++|+||+-.+.+.
T Consensus       184 --------RCEKas~~m~~~GF~eVyhL~GGIl~Y~e~  213 (308)
T COG1054         184 --------RCEKASAWMKENGFKEVYHLEGGILKYLED  213 (308)
T ss_pred             --------eehhhHHHHHHhcchhhhcccchHHHHhhh
Confidence                    999999999999999999999999887664

>PRK05600 thiamine biosynthesis protein ThiF; Validated

Probab=99.56  E-value=9.5e-15  Score=135.63  Aligned_cols=95  Identities=21%  Similarity=0.300  Sum_probs=78.1

Q ss_pred             ccccHHHHHHHhcCCCeEEEEcCChhhhhhCCCC---CCeeechhhHHhhhhhHHHHHHhhhhhccccCCCCCChHHHhh
Q 026264           93 RSVEAKEALRLQKENNFVILDVRPEAEFKEAHPP---GAINVQIYRLIKEWTAWDIARRAAFAFFGIFSGTEENPEFLQT  169 (241)
Q Consensus        93 ~~Is~~el~~~l~~~~~~lIDvR~~~Ey~~ghIp---GAinip~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  169 (241)
                      ..++++++.+++++++.+|||||++.||..||||   ||+|||+..+.+..                        ++.+ 
T Consensus       271 ~~~~~~el~~~l~~~~~~lIDVR~~~E~~~ghI~~~~gAinIPl~~l~~~~------------------------~~~~-  325 (370)
T PRK05600        271 ARTDTTSLIDATLNGSATLLDVREPHEVLLKDLPEGGASLKLPLSAITDDA------------------------DILH-  325 (370)
T ss_pred             cccCHHHHHHHHhcCCeEEEECCCHHHhhhccCCCCCccEeCcHHHhhcch------------------------hhhh-
Confidence            3689999999998877899999999999999998   59999998875310                        1111 


Q ss_pred             hhhcCCCCCCeEEEEcCCCCCCCCCCCCCCchhhHHHHHHHHHHHcCCcc-eeEccccHH
Q 026264          170 GVESQLDKDAKIIVACATGGTMKPSQNLPEGQQSRSLIAAYLLVLNGYKN-VYHLEGGLY  228 (241)
Q Consensus       170 ~~~~~i~~~~~IVvyC~~G~~~~~~~~~~~~~~~rs~~aa~~L~~~Gy~n-V~~l~GG~~  228 (241)
                       ....++++ +|||||.+|.              ||..++..|++.||++ |++|.||+.
T Consensus       326 -~l~~~~~~-~Ivv~C~sG~--------------RS~~Aa~~L~~~G~~~~v~~l~GG~~  369 (370)
T PRK05600        326 -ALSPIDGD-NVVVYCASGI--------------RSADFIEKYSHLGHELTLHNLPGGVN  369 (370)
T ss_pred             -hccccCCC-cEEEECCCCh--------------hHHHHHHHHHHcCCCCceEEeccccC
Confidence             11234554 8999999998              9999999999999986 999999985

>KOG1529 consensus Mercaptopyruvate sulfurtransferase/thiosulfate sulfurtransferase [Defense mechanisms]

Probab=99.33  E-value=5.6e-12  Score=111.75  Aligned_cols=121  Identities=20%  Similarity=0.241  Sum_probs=95.8

Q ss_pred             cccHHHHHHHhcCCCeEEEEcC---------ChhhhhhCCCCCCeeechhhHHhhhhhHHHHHHhhhhhccccCCCCCCh
Q 026264           94 SVEAKEALRLQKENNFVILDVR---------PEAEFKEAHPPGAINVQIYRLIKEWTAWDIARRAAFAFFGIFSGTEENP  164 (241)
Q Consensus        94 ~Is~~el~~~l~~~~~~lIDvR---------~~~Ey~~ghIpGAinip~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~  164 (241)
                      .|+++++.+.+.+.+..|||.-         ...||...|||||+++.++........          ..+++.   ...
T Consensus         6 iv~~~~v~~~~~~~~~~iLDaSw~~~~~~~~~~~e~~~~hipga~~fdld~~~~~s~~----------~~~~lp---~~e   72 (286)
T KOG1529|consen    6 IVSVKWVMENLGNHGLRILDASWYFPPLRRIAEFEFLERHIPGASHFDLDIISYPSSP----------YRHMLP---TAE   72 (286)
T ss_pred             ccChHHHHHhCcCCCeEEEeeeeecCchhhhhhhhhhhccCCCceeeeccccccCCCc----------ccccCc---cHH
Confidence            5888999999988889999984         456888999999999999887442211          111221   123


Q ss_pred             HHHhhhhhcCCCCCCeEEEEcC--CCCCCCCCCCCCCchhhHHHHHHHHHHHcCCcceeEccccHHHHHhCCCCcccC
Q 026264          165 EFLQTGVESQLDKDAKIIVACA--TGGTMKPSQNLPEGQQSRSLIAAYLLVLNGYKNVYHLEGGLYKWFKEELPEVSE  240 (241)
Q Consensus       165 ~~~~~~~~~~i~~~~~IVvyC~--~G~~~~~~~~~~~~~~~rs~~aa~~L~~~Gy~nV~~l~GG~~~W~~~g~p~~~g  240 (241)
                      .|.+-....++++++.+|||++  .|.             ..|.+++|.++.+|+++|.+|+||+..|++.|+|+.++
T Consensus        73 ~Fa~y~~~lGi~n~d~vViYd~~~~Gm-------------~~Asrv~W~fr~fGh~~VslL~GG~~~Wk~~g~~~~s~  137 (286)
T KOG1529|consen   73 HFAEYASRLGVDNGDHVVIYDRGDGGM-------------FSASRVWWTFRVFGHTKVSLLNGGFRAWKAAGGPVDSS  137 (286)
T ss_pred             HHHHHHHhcCCCCCCeEEEEcCCCcce-------------eehhhHHHHHHHhCccEEEEecCcHHHHHHcCCccccc
Confidence            4444435589999999999999  666             48999999999999999999999999999999999875

>PRK01269 tRNA s(4)U8 sulfurtransferase; Provisional

Probab=99.33  E-value=3.8e-12  Score=122.02  Aligned_cols=73  Identities=23%  Similarity=0.330  Sum_probs=64.1

Q ss_pred             CCeEEEEcCChhhhhhCCCCC----CeeechhhHHhhhhhHHHHHHhhhhhccccCCCCCChHHHhhhhhcCCCCCCeEE
Q 026264          107 NNFVILDVRPEAEFKEAHPPG----AINVQIYRLIKEWTAWDIARRAAFAFFGIFSGTEENPEFLQTGVESQLDKDAKII  182 (241)
Q Consensus       107 ~~~~lIDvR~~~Ey~~ghIpG----Ainip~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~IV  182 (241)
                      ++.+|||||++.||..|||||    |+|+|+..+...                                ...++++++||
T Consensus       406 ~~~~lIDVR~~~E~~~~hI~g~~~~a~niP~~~l~~~--------------------------------~~~l~~~~~ii  453 (482)
T PRK01269        406 PDDVIIDIRSPDEQEDKPLKLEGVEVKSLPFYKLSTQ--------------------------------FGDLDQSKTYL  453 (482)
T ss_pred             CCCEEEECCCHHHHhcCCCCCCCceEEECCHHHHHHH--------------------------------HhhcCCCCeEE
Confidence            368999999999999999999    999999887542                                13367888999


Q ss_pred             EEcCCCCCCCCCCCCCCchhhHHHHHHHHHHHcCCcceeEccc
Q 026264          183 VACATGGTMKPSQNLPEGQQSRSLIAAYLLVLNGYKNVYHLEG  225 (241)
Q Consensus       183 vyC~~G~~~~~~~~~~~~~~~rs~~aa~~L~~~Gy~nV~~l~G  225 (241)
                      +||.+|.              ||..++..|.++||+||++|.+
T Consensus       454 vyC~~G~--------------rS~~aa~~L~~~G~~nv~~y~~  482 (482)
T PRK01269        454 LYCDRGV--------------MSRLQALYLREQGFSNVKVYRP  482 (482)
T ss_pred             EECCCCH--------------HHHHHHHHHHHcCCccEEecCC
Confidence            9999998              9999999999999999998753

>KOG3772 consensus M-phase inducer phosphatase [Cell cycle control, cell division, chromosome partitioning]

Probab=99.25  E-value=1.2e-11  Score=111.75  Aligned_cols=103  Identities=24%  Similarity=0.449  Sum_probs=80.1

Q ss_pred             hccccccHHHHHHHhcCC------CeEEEEcCChhhhhhCCCCCCeeechhhHHhhhhhHHHHHHhhhhhccccCCCCCC
Q 026264           90 KRVRSVEAKEALRLQKEN------NFVILDVRPEAEFKEAHPPGAINVQIYRLIKEWTAWDIARRAAFAFFGIFSGTEEN  163 (241)
Q Consensus        90 ~~~~~Is~~el~~~l~~~------~~~lIDvR~~~Ey~~ghIpGAinip~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~  163 (241)
                      ..++.|+++.++.++++.      .++|||+|-+.||..|||+||+||+..+.....                       
T Consensus       153 ~~~k~Is~etl~~ll~~~~~~~~~~~~iiDcR~pyEY~GGHIkgavnl~~~~~~~~~-----------------------  209 (325)
T KOG3772|consen  153 QDLKYISPETLKGLLQGKFSDFFDKFIIIDCRYPYEYEGGHIKGAVNLYSKELLQDF-----------------------  209 (325)
T ss_pred             ccccccCHHHHHHHHHhccccceeeEEEEEeCCcccccCcccccceecccHhhhhhh-----------------------
Confidence            457899999999998752      367999999999999999999999988765421                       


Q ss_pred             hHHHhhhhhcCC---CCCCeEEEEcCCCCCCCCCCCCCCchhhHHHHHHHHHHH------------cCCcceeEccccHH
Q 026264          164 PEFLQTGVESQL---DKDAKIIVACATGGTMKPSQNLPEGQQSRSLIAAYLLVL------------NGYKNVYHLEGGLY  228 (241)
Q Consensus       164 ~~~~~~~~~~~i---~~~~~IVvyC~~G~~~~~~~~~~~~~~~rs~~aa~~L~~------------~Gy~nV~~l~GG~~  228 (241)
                        |..   ....   .+...+||||....             .|...+|..|+.            +-|..+++|+|||.
T Consensus       210 --f~~---~~~~~~~~~~~i~IFhCefSq-------------~RGP~mA~~lr~iDR~r~~~~yp~l~ypE~yiL~gGYk  271 (325)
T KOG3772|consen  210 --FLL---KDGVPSGSKRVILIFHCEFSQ-------------ERGPKMARHLRNIDRDRNSNDYPKLSYPELYILDGGYK  271 (325)
T ss_pred             --hcc---ccccccccCceeEEEEeeecc-------------ccCHHHHHHHHHhhhhhhcccCcccccchheeecccHH
Confidence              111   1111   23457899999876             499999999994            35668999999999


Q ss_pred             HHHhC
Q 026264          229 KWFKE  233 (241)
Q Consensus       229 ~W~~~  233 (241)
                      .|...
T Consensus       272 ~ff~~  276 (325)
T KOG3772|consen  272 EFFSN  276 (325)
T ss_pred             HHHHh
Confidence            99754

>KOG2017 consensus Molybdopterin synthase sulfurylase [Coenzyme transport and metabolism]

Probab=99.08  E-value=2.1e-10  Score=104.21  Aligned_cols=105  Identities=24%  Similarity=0.352  Sum_probs=83.6

Q ss_pred             ccccHHHHHHHhcC-CCeEEEEcCChhhhhhCCCCCCeeechhhHHhhhhhHHHHHHhhhhhccccCCCCCChHHHhhhh
Q 026264           93 RSVEAKEALRLQKE-NNFVILDVRPEAEFKEAHPPGAINVQIYRLIKEWTAWDIARRAAFAFFGIFSGTEENPEFLQTGV  171 (241)
Q Consensus        93 ~~Is~~el~~~l~~-~~~~lIDvR~~~Ey~~ghIpGAinip~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  171 (241)
                      ..|+..|+++++++ ..+++||||++-||+..|+|+|+|||+.++.....                      .+.    .
T Consensus       317 ~Rvsv~d~k~il~~~~~h~llDvRp~~~~eI~~lP~avNIPL~~l~~~~~----------------------~~~----~  370 (427)
T KOG2017|consen  317 ERVSVTDYKRILDSGAKHLLLDVRPSHEYEICRLPEAVNIPLKELRSRSG----------------------KKL----Q  370 (427)
T ss_pred             hcccHHHHHHHHhcCCCeEEEeccCcceEEEEecccccccchhhhhhhhh----------------------hhh----c
Confidence            57899999999987 47899999999999999999999999998876321                      000    1


Q ss_pred             hcCCCCCCeEEEEcCCCCCCCCCCCCCCchhhHHHHHHHHHHHcCCc-ceeEccccHHHHHhCCCCc
Q 026264          172 ESQLDKDAKIIVACATGGTMKPSQNLPEGQQSRSLIAAYLLVLNGYK-NVYHLEGGLYKWFKEELPE  237 (241)
Q Consensus       172 ~~~i~~~~~IVvyC~~G~~~~~~~~~~~~~~~rs~~aa~~L~~~Gy~-nV~~l~GG~~~W~~~g~p~  237 (241)
                      ...-....+|+|.|+.|+              .|.+|.+.|++...+ +|+-+.||+.+|...-.|.
T Consensus       371 ~~~~~~~~~I~ViCrrGN--------------dSQ~Av~~Lre~~~~~~vrDvigGl~~w~~~vd~~  423 (427)
T KOG2017|consen  371 GDLNTESKDIFVICRRGN--------------DSQRAVRILREKFPDSSVRDVIGGLKAWAAKVDPN  423 (427)
T ss_pred             ccccccCCCEEEEeCCCC--------------chHHHHHHHHhhCCchhhhhhhhHHHHHHHhcCcC
Confidence            112234567999999999              799999999986654 7888999999999875443

>KOG1529 consensus Mercaptopyruvate sulfurtransferase/thiosulfate sulfurtransferase [Defense mechanisms]

Probab=98.99  E-value=1.8e-09  Score=95.99  Aligned_cols=96  Identities=26%  Similarity=0.394  Sum_probs=76.9

Q ss_pred             hcCCCeEEEEcCChhhhh-----------hCCCCCCeeechhhHHhhhhhHHHHHHhhhhhccccCCCCC-ChHHHhhhh
Q 026264          104 QKENNFVILDVRPEAEFK-----------EAHPPGAINVQIYRLIKEWTAWDIARRAAFAFFGIFSGTEE-NPEFLQTGV  171 (241)
Q Consensus       104 l~~~~~~lIDvR~~~Ey~-----------~ghIpGAinip~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~  171 (241)
                      +..+++..||.|...+|.           .||||||+|+|+..+....                  +... ..+....+.
T Consensus       168 ~~~~~~~~~DaRs~grF~Gt~p~~~~~~~ggHIpGa~n~P~~~~~~~~------------------g~~k~~edl~~~f~  229 (286)
T KOG1529|consen  168 LATKNFQYLDARSKGRFDGTEPEPRSGATGGHIPGAINFPFDEVLDPD------------------GFIKPAEDLKHLFA  229 (286)
T ss_pred             cccccceeeeccccccccccCCCCcccCcCccCCCcccCChHHhcccc------------------cccCCHHHHHHHHH
Confidence            345579999999999986           6899999999999886521                  1111 233444445


Q ss_pred             hcCCCCCCeEEEEcCCCCCCCCCCCCCCchhhHHHHHHHHHHHcCCcceeEccccHHHHHh
Q 026264          172 ESQLDKDAKIIVACATGGTMKPSQNLPEGQQSRSLIAAYLLVLNGYKNVYHLEGGLYKWFK  232 (241)
Q Consensus       172 ~~~i~~~~~IVvyC~~G~~~~~~~~~~~~~~~rs~~aa~~L~~~Gy~nV~~l~GG~~~W~~  232 (241)
                      ..++..+++||+-|+.|.              .+...+..|...| .++.+|+|+|.+|.-
T Consensus       230 ~~~l~~~~p~~~sC~~Gi--------------sa~~i~~al~r~g-~~~~lYdGS~~Ew~~  275 (286)
T KOG1529|consen  230 QKGLKLSKPVIVSCGTGI--------------SASIIALALERSG-PDAKLYDGSWTEWAL  275 (286)
T ss_pred             hcCcccCCCEEEeeccch--------------hHHHHHHHHHhcC-CCcceecccHHHHhh
Confidence            577888999999999998              8889999999999 789999999999985

>COG5105 MIH1 Mitotic inducer, protein phosphatase [Cell division and chromosome partitioning]

Probab=98.41  E-value=6e-07  Score=81.08  Aligned_cols=101  Identities=23%  Similarity=0.354  Sum_probs=77.0

Q ss_pred             hccccccHHHHHHHhcCC------CeEEEEcCChhhhhhCCCCCCeeechhhHHhhhhhHHHHHHhhhhhccccCCCCCC
Q 026264           90 KRVRSVEAKEALRLQKEN------NFVILDVRPEAEFKEAHPPGAINVQIYRLIKEWTAWDIARRAAFAFFGIFSGTEEN  163 (241)
Q Consensus        90 ~~~~~Is~~el~~~l~~~------~~~lIDvR~~~Ey~~ghIpGAinip~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~  163 (241)
                      ..++.|+++.++.+++..      +.+|||+|=+.||..|||-.||||.-..-...                        
T Consensus       239 Ds~~RIs~etlk~vl~g~~~~~f~kCiIIDCRFeYEY~GGHIinaVNi~s~~~l~~------------------------  294 (427)
T COG5105         239 DSIQRISVETLKQVLEGMYNIDFLKCIIIDCRFEYEYRGGHIINAVNISSTKKLGL------------------------  294 (427)
T ss_pred             cchhhcCHHHHHHHHhchhhhhhhceeEEeecceeeecCceeeeeeecchHHHHHH------------------------
Confidence            346789999999998753      35699999999999999999999986543220                        


Q ss_pred             hHHHhhhhhcCCCCCCeEEEEcCCCCCCCCCCCCCCchhhHHHHHHHHHHHc------------CCcceeEccccHHHHH
Q 026264          164 PEFLQTGVESQLDKDAKIIVACATGGTMKPSQNLPEGQQSRSLIAAYLLVLN------------GYKNVYHLEGGLYKWF  231 (241)
Q Consensus       164 ~~~~~~~~~~~i~~~~~IVvyC~~G~~~~~~~~~~~~~~~rs~~aa~~L~~~------------Gy~nV~~l~GG~~~W~  231 (241)
                       .|    +-.-+..-..+|+.|....             .|+...|..|+..            =|..|++|+||+..+-
T Consensus       295 -~F----~hkplThp~aLifHCEfSs-------------hRaP~LA~HlRN~DR~~N~dhYP~L~yPevyIl~GGYk~fy  356 (427)
T COG5105         295 -LF----RHKPLTHPRALIFHCEFSS-------------HRAPRLAQHLRNMDRMKNPDHYPLLTYPEVYILEGGYKKFY  356 (427)
T ss_pred             -HH----HhccccCceeEEEEeeccc-------------ccchhHHHHHhhhhhhcCcccCcccccceEEEecCcHHHHh
Confidence             11    1122444567999999875             3999999999863            3568999999998865


Q ss_pred             h
Q 026264          232 K  232 (241)
Q Consensus       232 ~  232 (241)
                      .
T Consensus       357 ~  357 (427)
T COG5105         357 S  357 (427)
T ss_pred             h
Confidence            4

>COG2603 Predicted ATPase [General function prediction only]

Probab=97.65  E-value=4.3e-05  Score=68.53  Aligned_cols=113  Identities=22%  Similarity=0.192  Sum_probs=69.5

Q ss_pred             HhcCCCeEEEEcCChhhhhhCCCCCCeeechhhHHhhhhhHHHHHH----hhhhhccccCCCCCChHHHhhhhhcCCCCC
Q 026264          103 LQKENNFVILDVRPEAEFKEAHPPGAINVQIYRLIKEWTAWDIARR----AAFAFFGIFSGTEENPEFLQTGVESQLDKD  178 (241)
Q Consensus       103 ~l~~~~~~lIDvR~~~Ey~~ghIpGAinip~~~l~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~  178 (241)
                      .+...+..|||||.+.||..|+.|+++|+|...-.....-....++    ++....+.+.........++. ..... .+
T Consensus        10 ~~~~~~~~lid~rap~ef~~g~~~ia~nl~~~ndder~~Igt~yKk~~~~~a~alg~~~vcG~i~~~~l~a-sk~f~-e~   87 (334)
T COG2603          10 ALLLADTPLIDVRAPIEFENGAMPIAINLPLMNDDERQEIGTCYKKQGQDAAKALGHALVCGEIRQQRLEA-SKAFQ-EE   87 (334)
T ss_pred             HHHhcCCceeeccchHHHhcccchhhhccccccchHHHHHHHHHhhcCcHHHHHHHHHHHHhHHHHHHHHH-HHHHH-Hh
Confidence            3334488999999999999999999999998765443322222222    222222221111112222222 11111 22


Q ss_pred             CeEEEEcCCCCCCCCCCCCCCchhhHHHHHHHHH-HHcCCcceeEccccHHHHH
Q 026264          179 AKIIVACATGGTMKPSQNLPEGQQSRSLIAAYLL-VLNGYKNVYHLEGGLYKWF  231 (241)
Q Consensus       179 ~~IVvyC~~G~~~~~~~~~~~~~~~rs~~aa~~L-~~~Gy~nV~~l~GG~~~W~  231 (241)
                      .++-++|..|+             .|+...+.+| ...|++ +.-+.||+.+..
T Consensus        88 ~~~Gi~c~rgg-------------~rsk~v~~~l~~~~g~~-~~r~iGGeKalr  127 (334)
T COG2603          88 NPVGILCARGG-------------LRSKIVQKWLGYAAGID-YPRVIGGEKALR  127 (334)
T ss_pred             CCcceeecccc-------------chhHHHHHHHHHHHHhh-hhhhhchHHHHH
Confidence            35555599988             4999999999 778875 667789987654

>KOG1717 consensus Dual specificity phosphatase [Defense mechanisms]

Probab=95.80  E-value=0.017  Score=51.63  Aligned_cols=120  Identities=19%  Similarity=0.198  Sum_probs=70.6

Q ss_pred             cccHHHHHHHhcCCCeEEEEcCChhhhhhCCCCCCeeechhhHHhhhhhHHHHHHhhhhhccccCCCCCChHHHhhhhhc
Q 026264           94 SVEAKEALRLQKENNFVILDVRPEAEFKEAHPPGAINVQIYRLIKEWTAWDIARRAAFAFFGIFSGTEENPEFLQTGVES  173 (241)
Q Consensus        94 ~Is~~el~~~l~~~~~~lIDvR~~~Ey~~ghIpGAinip~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  173 (241)
                      .++.+|+.+.+..++.+++|+|+    +..||.+|+|+-+..++.+...     +--+.+..++.+....+.|-.     
T Consensus         5 ~~s~~wlnr~l~~~nllllDCRs----es~~i~~A~~valPalmlrrl~-----~g~l~~ra~~p~~~d~~~~~~-----   70 (343)
T KOG1717|consen    5 SKSVAWLNRQLELGNLLLLDCRS----ESSHIESAINVALPALMLRRLT-----GGNLPVRALFPRSCDDKRFPA-----   70 (343)
T ss_pred             HHHHHHHHhhcccCceEEEecCC----ccchhhhhhhhcchHHHHHHHh-----CCCCcceeccCCccccccccc-----
Confidence            47888999999888999999999    5679999999988877653200     000111111211111111110     


Q ss_pred             CCCCCCeEEEEcCCCCCCCCCCCCCCchhhHHHHHHHHHHHcCCcceeEccccHHHHHhC
Q 026264          174 QLDKDAKIIVACATGGTMKPSQNLPEGQQSRSLIAAYLLVLNGYKNVYHLEGGLYKWFKE  233 (241)
Q Consensus       174 ~i~~~~~IVvyC~~G~~~~~~~~~~~~~~~rs~~aa~~L~~~Gy~nV~~l~GG~~~W~~~  233 (241)
                       -=+...+|.|+.+...|.+-..    -..--...-+.++..|+. +++|.|||..+..+
T Consensus        71 -~c~~v~vilyD~~~~e~e~~~~----~~s~Lg~ll~kl~~~g~~-a~yL~ggF~~fq~e  124 (343)
T KOG1717|consen   71 -RCGTVTVILYDESSAEWEEETG----AESVLGLLLKKLKDEGCS-ARYLSGGFSKFQAE  124 (343)
T ss_pred             -cCCcceeeecccccccccccch----hhhHHHHHHHHHHhcCcc-hhhhhcccchhhhh
Confidence             0123678999988543322111    011111233566677885 99999999987654

>PF04273 DUF442: Putative phosphatase (DUF442); InterPro: IPR005939 Although this domain is uncharacterised it seems likely that it performs a phosphatase function

Probab=95.50  E-value=0.042  Score=42.72  Aligned_cols=27  Identities=15%  Similarity=0.359  Sum_probs=17.0

Q ss_pred             ccccHHHHHHHhcCCCeEEEEcCChhh
Q 026264           93 RSVEAKEALRLQKENNFVILDVRPEAE  119 (241)
Q Consensus        93 ~~Is~~el~~~l~~~~~~lIDvR~~~E  119 (241)
                      ..++++++.++.+.+=..||+.|+..|
T Consensus        13 ~Q~~~~d~~~la~~GfktVInlRpd~E   39 (110)
T PF04273_consen   13 GQPSPEDLAQLAAQGFKTVINLRPDGE   39 (110)
T ss_dssp             CS--HHHHHHHHHCT--EEEE-S-TTS
T ss_pred             CCCCHHHHHHHHHCCCcEEEECCCCCC
Confidence            368899999888875678999998755

; GO: 0016787 hydrolase activity; PDB: 2F46_A 3GXH_B 3GXG_B.

>KOG3636 consensus Uncharacterized conserved protein, contains TBC and Rhodanese domains [General function prediction only]

Probab=94.82  E-value=0.24  Score=47.37  Aligned_cols=48  Identities=19%  Similarity=0.349  Sum_probs=35.7

Q ss_pred             ccccHHHHHHHh--cCC--CeEEEEcCChhhhhhCCCCCCeeechhhHHhhh
Q 026264           93 RSVEAKEALRLQ--KEN--NFVILDVRPEAEFKEAHPPGAINVQIYRLIKEW  140 (241)
Q Consensus        93 ~~Is~~el~~~l--~~~--~~~lIDvR~~~Ey~~ghIpGAinip~~~l~~~~  140 (241)
                      -.|+.-|+.+.-  ..+  .+.|||+|+..+|+.||+..|.|+.-.-..++.
T Consensus       307 Lpisv~el~~~~~~~~~~VrFFiVDcRpaeqynaGHlstaFhlDc~lmlqeP  358 (669)
T KOG3636|consen  307 LPISVIELTSHDEISSGSVRFFIVDCRPAEQYNAGHLSTAFHLDCVLMLQEP  358 (669)
T ss_pred             cchhHHHhhcccccccCceEEEEEeccchhhcccccchhhhcccHHHHhcCH
Confidence            346666665432  222  478999999999999999999999987665543

>KOG1093 consensus Predicted protein kinase (contains TBC and RHOD domains) [General function prediction only]

Probab=94.74  E-value=0.011  Score=57.71  Aligned_cols=104  Identities=19%  Similarity=0.262  Sum_probs=69.5

Q ss_pred             HhhhccccccHHHHHHHhcCCCeEEEEcCChhhhhhCCCCCCeeechhhHHhhhhhHHHHHHhhhhhccccCCCCCChHH
Q 026264           87 LLQKRVRSVEAKEALRLQKENNFVILDVRPEAEFKEAHPPGAINVQIYRLIKEWTAWDIARRAAFAFFGIFSGTEENPEF  166 (241)
Q Consensus        87 l~~~~~~~Is~~el~~~l~~~~~~lIDvR~~~Ey~~ghIpGAinip~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  166 (241)
                      +....++.|+++++..+   ....++|.|...||..+|+++++|+|...-+.+. .|.                    .+
T Consensus       616 l~se~~prmsAedl~~~---~~l~v~d~r~~~ef~r~~~s~s~nip~~~~ea~l-~~~--------------------~~  671 (725)
T KOG1093|consen  616 LSSEHCPRISAEDLIWL---KMLYVLDTRQESEFQREHFSDSINIPFNNHEADL-DWL--------------------RF  671 (725)
T ss_pred             hhhhcCccccHHHHHHH---HHHHHHhHHHHHHHHHhhccccccCCccchHHHH-HHh--------------------hc
Confidence            33466788999988776   4688999999999999999999999998222111 000                    01


Q ss_pred             HhhhhhcCCCCCCeEEEEcCCCCCCCCCCCCCCchhhHHHHHHHHHHHcCCcceeEccccHHHHH
Q 026264          167 LQTGVESQLDKDAKIIVACATGGTMKPSQNLPEGQQSRSLIAAYLLVLNGYKNVYHLEGGLYKWF  231 (241)
Q Consensus       167 ~~~~~~~~i~~~~~IVvyC~~G~~~~~~~~~~~~~~~rs~~aa~~L~~~Gy~nV~~l~GG~~~W~  231 (241)
                      .+.   ..-..+.++|++.....              -+.+....+..+-+..+.++.+|++...
T Consensus       672 l~~---~~~~~~~~~v~~~~~~K--------------~~~e~~~~~~~mk~p~~cil~~~~~~~~  719 (725)
T KOG1093|consen  672 LPG---IVCSEGKKCVVVGKNDK--------------HAAERLTELYVMKVPRICILHDGFNNID  719 (725)
T ss_pred             chH---hHHhhCCeEEEeccchH--------------HHHHHhhHHHHhcccHHHHHHHHHhhcC
Confidence            111   11134455666655443              6666666777767888889999998443

>TIGR01244 conserved hypothetical protein TIGR01244

Probab=94.55  E-value=0.14  Score=40.93  Aligned_cols=28  Identities=14%  Similarity=0.203  Sum_probs=21.1

Q ss_pred             ccccHHHHHHHhcCCCeEEEEcCChhhh
Q 026264           93 RSVEAKEALRLQKENNFVILDVRPEAEF  120 (241)
Q Consensus        93 ~~Is~~el~~~l~~~~~~lIDvR~~~Ey  120 (241)
                      ..++++++..+.+.+=..|||.|+..|-
T Consensus        13 ~qlt~~d~~~L~~~GiktVIdlR~~~E~   40 (135)
T TIGR01244        13 PQLTKADAAQAAQLGFKTVINNRPDREE   40 (135)
T ss_pred             CCCCHHHHHHHHHCCCcEEEECCCCCCC
Confidence            4578888877665555789999997764

No member of this family is characterized. The member from Xylella fastidiosa is a longer protein with an N-terminal region described by this model, followed by a metallo-beta-lactamase family domain and an additional C-terminal region. Members scoring above the trusted cutoff are limited to the proteobacteria.

>PF13350 Y_phosphatase3: Tyrosine phosphatase family; PDB: 1YWF_A 2OZ5_B

Probab=92.00  E-value=1.2  Score=36.39  Aligned_cols=41  Identities=20%  Similarity=0.212  Sum_probs=21.5

Q ss_pred             hccccccHHHHHHHhcCCCeEEEEcCChhhhhhC---CCCCCee
Q 026264           90 KRVRSVEAKEALRLQKENNFVILDVRPEAEFKEA---HPPGAIN  130 (241)
Q Consensus        90 ~~~~~Is~~el~~~l~~~~~~lIDvR~~~Ey~~g---hIpGAin  130 (241)
                      ..+..++.+++..+.+-+=-.|||.|++.|....   .++|..+
T Consensus        25 ~~l~~lt~~d~~~L~~lgI~tIiDLRs~~E~~~~p~~~~~g~~~   68 (164)
T PF13350_consen   25 GNLSNLTEADLERLRELGIRTIIDLRSPTERERAPDPLIDGVQY   68 (164)
T ss_dssp             S--TT--HHHHHHHHHTT--EEEE-S-HHHHHHHS----TT-EE
T ss_pred             CCcCcCCHHHHHHHHhCCCCEEEECCCccccccCCCCCcCCcee
Confidence            3445788888877775445689999999998753   4556643

>PRK00142 putative rhodanese-related sulfurtransferase; Provisional

Probab=90.96  E-value=0.066  Score=48.98  Aligned_cols=49  Identities=12%  Similarity=0.097  Sum_probs=37.5

Q ss_pred             ccHHHHHHHhcCCCeEEEEcCChhhhhhCCCCCCeeechhhHHhhhhhHHH
Q 026264           95 VEAKEALRLQKENNFVILDVRPEAEFKEAHPPGAINVQIYRLIKEWTAWDI  145 (241)
Q Consensus        95 Is~~el~~~l~~~~~~lIDvR~~~Ey~~ghIpGAinip~~~l~~~~~~~~~  145 (241)
                      =+++++.+.+.. ...++|+|....|..+||||++|+|. .-...|.+|..
T Consensus        16 ~~~~~~~~~l~~-~~~~~d~rg~i~~a~egIngtis~~~-~~~~~~~~~l~   64 (314)
T PRK00142         16 EDPEAFRDEHLA-LCKSLGLKGRILVAEEGINGTVSGTI-EQTEAYMAWLK   64 (314)
T ss_pred             CCHHHHHHHHHH-HHHHcCCeeEEEEcCCCceEEEEecH-HHHHHHHHHHh
Confidence            345666666654 46788999999999999999999999 44555666654

>cd00127 DSPc Dual specificity phosphatases (DSP); Ser/Thr and Tyr protein phosphatases

Probab=88.03  E-value=1.3  Score=34.37  Aligned_cols=29  Identities=38%  Similarity=0.642  Sum_probs=20.5

Q ss_pred             CCCCeEEEEcCCCCCCCCCCCCCCchhhHHHH--HHHHHHHcCC
Q 026264          176 DKDAKIIVACATGGTMKPSQNLPEGQQSRSLI--AAYLLVLNGY  217 (241)
Q Consensus       176 ~~~~~IVvyC~~G~~~~~~~~~~~~~~~rs~~--aa~~L~~~Gy  217 (241)
                      ..+.+|+|+|..|..             ||..  +++.+...|+
T Consensus        79 ~~~~~vlVHC~~G~~-------------Rs~~~~~~~l~~~~~~  109 (139)
T cd00127          79 EKGGKVLVHCLAGVS-------------RSATLVIAYLMKTLGL  109 (139)
T ss_pred             hcCCcEEEECCCCCc-------------hhHHHHHHHHHHHcCC
Confidence            346799999999973             6654  3566666665

Structurally similar to tyrosine-specific phosphatases but with a shallower active site cleft and a distinctive active site signature motif, HCxxGxxR. Characterized as VHR- or Cdc25-like.

>PF01451 LMWPc: Low molecular weight phosphotyrosine protein phosphatase; InterPro: IPR023485 Protein tyrosine (pTyr) phosphorylation is a common post-translational modification which can create novel recognition motifs for protein interactions and cellular localisation, affect protein stability, and regulate enzyme activity

Probab=84.40  E-value=1.1  Score=35.36  Aligned_cols=37  Identities=22%  Similarity=0.206  Sum_probs=32.8

Q ss_pred             EEEEcCCCCCCCCCCCCCCchhhHHHHHHHHHHHc----CCcceeEccccHHHH
Q 026264          181 IIVACATGGTMKPSQNLPEGQQSRSLIAAYLLVLN----GYKNVYHLEGGLYKW  230 (241)
Q Consensus       181 IVvyC~~G~~~~~~~~~~~~~~~rs~~aa~~L~~~----Gy~nV~~l~GG~~~W  230 (241)
                      |+|.|.++.|             ||.+|..+|+++    +-.++.+...|+.+|
T Consensus         1 ILFvC~~N~c-------------RS~mAEai~~~~~~~~~~~~~~v~SAG~~~~   41 (138)
T PF01451_consen    1 ILFVCTGNIC-------------RSPMAEAILRHLLKQRLGDRFEVESAGTEAW   41 (138)
T ss_dssp             EEEEESSSSS-------------HHHHHHHHHHHHHHHTHTTTEEEEEEESSST
T ss_pred             CEEEeCCCcc-------------hHHHHHHHHHHhccccccCCcEEEEEeeccc
Confidence            6899999987             999999999988    667899999998877

Consequently, maintaining an appropriate level of protein tyrosine phosphorylation is essential for many cellular functions. Tyrosine-specific protein phosphatases (PTPase; 3.1.3.48 from EC) catalyse the removal of a phosphate group attached to a tyrosine residue, using a cysteinyl-phosphate enzyme intermediate. These enzymes are key regulatory components in signal transduction pathways (such as the MAP kinase pathway) and cell cycle control, and are important in the control of cell growth, proliferation, differentiation and transformation [, ]. The PTP superfamily can be divided into four subfamilies []: (1) pTyr-specific phosphatases (2) dual specificity phosphatases (dTyr and dSer/dThr) (3) Cdc25 phosphatases (dTyr and/or dThr) (4) LMW (low molecular weight) phosphatases Based on their cellular localisation, PTPases are also classified as: Receptor-like, which are transmembrane receptors that contain PTPase domains [] Non-receptor (intracellular) PTPases [] All PTPases carry the highly conserved active site motif C(X)5R (PTP signature motif), employ a common catalytic mechanism, and share a similar core structure made of a central parallel beta-sheet with flanking alpha-helices containing a beta-loop-alpha-loop that encompasses the PTP signature motif []. Functional diversity between PTPases is endowed by regulatory domains and subunits. This entry represents the low molecular weight (LMW) protein-tyrosine phosphatases (or acid phosphatase), which act on tyrosine phosphorylated proteins, low-MW aryl phosphates and natural and synthetic acyl phosphates [, ]. The structure of a LMW PTPase has been solved by X-ray crystallography [] and is found to form a single structural domain. It belongs to the alpha/beta class, with 6 alpha-helices and 4 beta-strands forming a 3-layer alpha-beta-alpha sandwich architecture.; PDB: 3RH0_B 1JL3_B 2IPA_B 1Z2D_A 1Z2E_A 2CWD_D 2L18_A 2L17_A 2L19_A 1BVH_A ....

>TIGR03167 tRNA_sel_U_synt tRNA 2-selenouridine synthase

Probab=84.01  E-value=1.9  Score=39.39  Aligned_cols=35  Identities=14%  Similarity=0.109  Sum_probs=31.2

Q ss_pred             cccccHHHHHHHhcCCCeEEEEcCChhhhhh---CCCC
Q 026264           92 VRSVEAKEALRLQKENNFVILDVRPEAEFKE---AHPP  126 (241)
Q Consensus        92 ~~~Is~~el~~~l~~~~~~lIDvR~~~Ey~~---ghIp  126 (241)
                      ...+...++++.+...+..|||+|+..+|..   ||||
T Consensus       135 ~tg~gKt~Ll~~L~~~~~~VvDlr~~a~hrGs~fG~~~  172 (311)
T TIGR03167       135 MTGSGKTELLHALANAGAQVLDLEGLANHRGSSFGALG  172 (311)
T ss_pred             CCCcCHHHHHHHHhcCCCeEEECCchHHhcCcccCCCC
Confidence            4568888999999887889999999999998   9999

The Escherichia coli YbbB protein was shown to encode a selenophosphate-dependent tRNA 2-selenouridine synthase, essential for modification of some tRNAs to replace a sulfur atom with selenium. This enzyme works with SelD, the selenium donor protein, which also acts in selenocysteine incorporation. Although the members of this protein family show a fairly deep split, sequences from both sides of the split are supported by co-occurence with, and often proximity to, the selD gene.

>smart00195 DSPc Dual specificity phosphatase, catalytic domain

Probab=83.20  E-value=3.6  Score=32.10  Aligned_cols=32  Identities=31%  Similarity=0.523  Sum_probs=23.7

Q ss_pred             CCCCCCeEEEEcCCCCCCCCCCCCCCchhhHHHH--HHHHHHHcCCc
Q 026264          174 QLDKDAKIIVACATGGTMKPSQNLPEGQQSRSLI--AAYLLVLNGYK  218 (241)
Q Consensus       174 ~i~~~~~IVvyC~~G~~~~~~~~~~~~~~~rs~~--aa~~L~~~Gy~  218 (241)
                      ....+.+|+|+|..|..             ||..  +++.+...|++
T Consensus        74 ~~~~~~~VlVHC~~G~~-------------RS~~v~~~yl~~~~~~~  107 (138)
T smart00195       74 AEKKGGKVLVHCQAGVS-------------RSATLIIAYLMKYRNLS  107 (138)
T ss_pred             HhcCCCeEEEECCCCCc-------------hHHHHHHHHHHHHhCCC
Confidence            35677899999999973             6654  56677777874

>COG3453 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=80.30  E-value=6.5  Score=31.27  Aligned_cols=94  Identities=17%  Similarity=0.166  Sum_probs=50.0

Q ss_pred             ccccHHHHHHHhcCCCeEEEEcCChhhhhhCCCCCCeeechhhHHhhhhhHHHHHHhhhhhccccCCC-CCChHHHhhhh
Q 026264           93 RSVEAKEALRLQKENNFVILDVRPEAEFKEAHPPGAINVQIYRLIKEWTAWDIARRAAFAFFGIFSGT-EENPEFLQTGV  171 (241)
Q Consensus        93 ~~Is~~el~~~l~~~~~~lIDvR~~~Ey~~ghIpGAinip~~~l~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~  171 (241)
                      ..|+++++.++-..+=..||--||..|-.  .=|+      ..-..     ..+..+++.|.++.... ..-++-++.+.
T Consensus        14 gQi~~~D~~~iaa~GFksiI~nRPDgEe~--~QP~------~~~i~-----~aa~~aGl~y~~iPV~~~~iT~~dV~~f~   80 (130)
T COG3453          14 GQISPADIASIAALGFKSIICNRPDGEEP--GQPG------FAAIA-----AAAEAAGLTYTHIPVTGGGITEADVEAFQ   80 (130)
T ss_pred             CCCCHHHHHHHHHhccceecccCCCCCCC--CCCC------hHHHH-----HHHHhcCCceEEeecCCCCCCHHHHHHHH
Confidence            35888888887776556789999855431  1111      11111     11223333433332221 11222233322


Q ss_pred             hcCCCCCCeEEEEcCCCCCCCCCCCCCCchhhHHHHHHHHHH
Q 026264          172 ESQLDKDAKIIVACATGGTMKPSQNLPEGQQSRSLIAAYLLV  213 (241)
Q Consensus       172 ~~~i~~~~~IVvyC~~G~~~~~~~~~~~~~~~rs~~aa~~L~  213 (241)
                      ...-..+.+|+.||++|.              ||...+..-.
T Consensus        81 ~Al~eaegPVlayCrsGt--------------Rs~~ly~~~~  108 (130)
T COG3453          81 RALDEAEGPVLAYCRSGT--------------RSLNLYGLGE  108 (130)
T ss_pred             HHHHHhCCCEEeeecCCc--------------hHHHHHHHHH
Confidence            233345679999999998              9887665443

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	241
1tq1_A	129	Solution Structure Of At5g66040, A Putative Protein		7e-06

>pdb|1TQ1|A Chain A, Solution Structure Of At5g66040, A Putative Protein From Arabidosis Thaliana Length = 129

Iteration: 1
 Score = 47.4 bits (111), Expect = 7e-06,   Method: Compositional matrix adjust.
 Identities = 37/125 (29%), Positives = 47/125 (37%), Gaps = 34/125 (27%)
Query: 112 LDVRPEAEFKEAHPPGAINVQIYRLIKEWTAWDXXXXXXXXXXXXXSGTEENPEFLQTGV 171
           LDVR   EF + H  GAINV                          SG  +N +FL+  V
Sbjct: 36  LDVRTPEEFSQGHACGAINVPYMN-------------------RGASGMSKNTDFLEQ-V 75
Query: 172 ESQLDKDAKIIVACATGGTMKPSQNLPEGQQSRSLIAAYLLVLNGYKNVYHLEGGLYKWF 231
            S   +   IIV C +GG              RS+ A   L+  G+  V  + GG   W 
Sbjct: 76  SSHFGQSDNIIVGCQSGG--------------RSIKATTDLLHAGFTGVKDIVGGYSAWA 121
Query: 232 KEELP 236
           K  LP
Sbjct: 122 KNGLP 126

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	241
1tq1_A	129	AT5G66040, senescence-associated family protein; C	2e-27
3d1p_A	139	Putative thiosulfate sulfurtransferase YOR285W; at	5e-22
2hhg_A	139	Hypothetical protein RPA3614; MCSG, structural gen	1e-21
3hix_A	106	ALR3790 protein; rhodanese, rhodanese_3, Q8YQN0, Q	3e-21
2k0z_A	110	Uncharacterized protein HP1203; A/B domain, struct	3e-21
3ilm_A	141	ALR3790 protein; rhodanese-like, NSR437H, NESG, st	4e-21
1gmx_A	108	GLPE protein; transferase, rhodanese, sulfurtransf	5e-21
2fsx_A	148	RV0390, COG0607: rhodanese-related sulfurtransfera	8e-21
1qxn_A	137	SUD, sulfide dehydrogenase; polysulfide-sulfur tra	1e-20
1vee_A	134	Proline-rich protein family; hypothetical protein,	2e-18
3nhv_A	144	BH2092 protein; alpha-beta protein, structural gen	4e-17
1yt8_A	539	Thiosulfate sulfurtransferase; rhodanase domains,	6e-17
1yt8_A	539	Thiosulfate sulfurtransferase; rhodanase domains,	5e-14
1yt8_A	539	Thiosulfate sulfurtransferase; rhodanase domains,	2e-08
1yt8_A	539	Thiosulfate sulfurtransferase; rhodanase domains,	1e-07
3eme_A	103	Rhodanese-like domain protein; alpha-beta-alpha sa	1e-16
3gk5_A	108	Uncharacterized rhodanese-related protein TVG08686	1e-16
3foj_A	100	Uncharacterized protein; protein SSP1007, structur	3e-16
3tp9_A	474	Beta-lactamase and rhodanese domain protein; struc	6e-16
1t3k_A	152	Arath CDC25, dual-specificity tyrosine phosphatase	1e-15
3flh_A	124	Uncharacterized protein LP_1913; alpha-beta protei	2e-14
1wv9_A	94	Rhodanese homolog TT1651; CDC25, phosphatase, sulf	3e-14
3i2v_A	127	Adenylyltransferase and sulfurtransferase MOCS3; r	4e-14
2jtq_A	85	Phage shock protein E; solution structure rhodanes	1e-13
3r2u_A	466	Metallo-beta-lactamase family protein; structural	1e-12
3ics_A	588	Coenzyme A-disulfide reductase; pyridine nucleotid	6e-12
3g5j_A	134	Putative ATP/GTP binding protein; N-terminal domai	6e-12
2j6p_A	152	SB(V)-AS(V) reductase; arsenate reductase, antimon	1e-10
1c25_A	161	CDC25A; hydrolase, cell cycle phosphatase,dual spe	3e-10
3ntd_A	565	FAD-dependent pyridine nucleotide-disulphide oxido	3e-10
3f4a_A	169	Uncharacterized protein YGR203W; protein phosphata	2e-09
2a2k_A	175	M-phase inducer phosphatase 2; dual specificity, s	3e-09
1qb0_A	211	Protein (M-phase inducer phosphatase 2 (CDC25B));	3e-08
3op3_A	216	M-phase inducer phosphatase 3; structural genomics	3e-07
4f67_A	265	UPF0176 protein LPG2838; structural genomics, PSI-	4e-06
2ouc_A	142	Dual specificity protein phosphatase 10; rhodanese	7e-06
2vsw_A	153	Dual specificity protein phosphatase 16; hydrolase	1e-05
3tg1_B	158	Dual specificity protein phosphatase 10; kinase/rh	2e-05
1e0c_A	271	Rhodanese, sulfurtransferase; sulfur metabolism, t	3e-05
1hzm_A	154	Dual specificity protein phosphatase 6; hydrolase;	1e-04
1whb_A	157	KIAA0055; deubiqutinating enzyme, UBPY, structural	2e-04
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	6e-04
2gwf_A	157	Ubiquitin carboxyl-terminal hydrolase 8; protein-p	9e-04

>1tq1_A AT5G66040, senescence-associated family protein; CESG, structural genomics, protein structure initiative; NMR {Arabidopsis thaliana} SCOP: c.46.1.3 Length = 129

 Score =  101 bits (253), Expect = 2e-27
 Identities = 41/151 (27%), Positives = 54/151 (35%), Gaps = 35/151 (23%)

Query: 89  QKRVRSVEAKEALRLQKENNFVILDVRPEAEFKEAHPPGAINVQIYRLIKEWTAWDIARR 148
            +   SV    A  L    +   LDVR   EF + H  GAINV                 
Sbjct: 14  SRVPSSVSVTVAHDLLLAGH-RYLDVRTPEEFSQGHACGAINVPYMNRG----------- 61

Query: 149 AAFAFFGIFSGTEENPEFLQTGVESQLDKDAKIIVACATGGTMKPSQNLPEGQQSRSLIA 208
                    SG  +N +FL+  V S   +   IIV C +GG              RS+ A
Sbjct: 62  --------ASGMSKNTDFLEQ-VSSHFGQSDNIIVGCQSGG--------------RSIKA 98

Query: 209 AYLLVLNGYKNVYHLEGGLYKWFKEELPEVS 239
              L+  G+  V  + GG   W K  LP  +
Sbjct: 99  TTDLLHAGFTGVKDIVGGYSAWAKNGLPTKA 129

>3d1p_A Putative thiosulfate sulfurtransferase YOR285W; atomic structure, atomic resolution structure, PSI, MCSG; HET: MSE; 0.98A {Saccharomyces cerevisiae} Length = 139

 Score = 87.5 bits (217), Expect = 5e-22
 Identities = 26/143 (18%), Positives = 46/143 (32%), Gaps = 34/143 (23%)

Query: 96  EAKEALRLQKENNFVILDVRPEAEFKEAHPPGAINVQIYRLIKEWTAWDIARRAAFAFFG 155
           + K  +  + + N V++DVR  +E+   H P +INV        +               
Sbjct: 29  DMKRIVG-KHDPNVVLVDVREPSEYSIVHIPASINVPYRSHPDAFALDP----------- 76

Query: 156 IFSGTEENPEFLQTGVESQLDKDAKIIVACATGGTMKPSQNLPEGQQSRSLIAAYLLVLN 215
                    EF +     + D   ++I  CA+G               R   A  +   +
Sbjct: 77  --------LEFEKQIGIPKPDSAKELIFYCASGK--------------RGGEAQKVASSH 114

Query: 216 GYKNVYHLEGGLYKWFKEELPEV 238
           GY N     G +  W      ++
Sbjct: 115 GYSNTSLYPGSMNDWVSHGGDKL 137

>2hhg_A Hypothetical protein RPA3614; MCSG, structural genomics, rohopseudom palustris, PSI-2, protein structure initiative; 1.20A {Rhodopseudomonas palustris} Length = 139

 Score = 86.2 bits (214), Expect = 1e-21
 Identities = 32/161 (19%), Positives = 56/161 (34%), Gaps = 43/161 (26%)

Query: 81  KTKRELLLQ--KRVRSVEAKEALRLQKEN--NFVILDVRPEAEF-KEAHPPGAINVQIYR 135
           +  + +L +    + ++   +A+ L K    + VI+D+R   E  ++   PG+ +    R
Sbjct: 8   RGIKAMLDEANSSIETLTTADAIALHKSGASDVVIVDIRDPREIERDGKIPGSFS--CTR 65

Query: 136 LIKEWTAWDIARRAAFAFFGIFSGTEENPEFLQTGVESQLDKDAKIIVACATGGTMKPSQ 195
            + E+                     ++P            +D K +  CA G       
Sbjct: 66  GMLEFWID-----------------PQSPYAK-----PIFQEDKKFVFYCAGGL------ 97

Query: 196 NLPEGQQSRSLIAAYLLVLNGYKNVYHLEGGLYKWFKEELP 236
                   RS +AA      G K V H+EGG   W     P
Sbjct: 98  --------RSALAAKTAQDMGLKPVAHIEGGFGAWRDAGGP 130

>3hix_A ALR3790 protein; rhodanese, rhodanese_3, Q8YQN0, Q8YQN0_anAsp, NSR437I, NESG, structural genomics, PSI-2, protein structure initiative; 1.92A {Anabaena SP} PDB: 3k9r_A Length = 106

 Score = 84.2 bits (209), Expect = 3e-21
 Identities = 32/146 (21%), Positives = 46/146 (31%), Gaps = 46/146 (31%)

Query: 95  VEAKEALRLQKENNFVILDVRPEAEFKEAHPPGAINVQIYRLIKEWTAWDIARRAAFAFF 154
           +  K  L    E  F ILDVR  + + + H  GA+ + I  L+                 
Sbjct: 1   MVLKSRLE-WGEPAFTILDVRDRSTYNDGHIMGAMAMPIEDLVDR--------------- 44

Query: 155 GIFSGTEENPEFLQTGVESQLDKDAKIIVACATGGTMKPSQNLPEGQQSRSLIAAYLLVL 214
                             S L+K   I V  A                 ++  A  LL  
Sbjct: 45  ----------------ASSSLEKSRDIYVYGAGDE--------------QTSQAVNLLRS 74

Query: 215 NGYKNVYHLEGGLYKWFKEELPEVSE 240
            G+++V  L+GGL  W     P   E
Sbjct: 75  AGFEHVSELKGGLAAWKAIGGPTELE 100

>2k0z_A Uncharacterized protein HP1203; A/B domain, structural genomics, unknown function, PSI-2, PR structure initiative; NMR {Helicobacter pylori} Length = 110

 Score = 84.3 bits (209), Expect = 3e-21
 Identities = 31/146 (21%), Positives = 51/146 (34%), Gaps = 45/146 (30%)

Query: 96  EAKEALRLQKENNFVILDVRPEAEFKEAHPPGAINVQIYRLIKEWTAWDIARRAAFAFFG 155
           +   +L     N+F+++DVR   E++E H P A  + +          D  + A      
Sbjct: 4   DYAISLEEVNFNDFIVVDVRELDEYEELHLPNATLISVN---------DQEKLAD----- 49

Query: 156 IFSGTEENPEFLQTGVESQLDKDAKIIVACATGGTMKPSQNLPEGQQSRSLIAAYLLVLN 215
                                KD K+++ C  G               R+L AA  +   
Sbjct: 50  ----------------FLSQHKDKKVLLHCRAGR--------------RALDAAKSMHEL 79

Query: 216 GYKNVYHLEGGLYKWFKEELPEVSEE 241
           GY   Y LEG +Y + K     V ++
Sbjct: 80  GYTPYY-LEGNVYDFEKYGFRMVYDD 104

>3ilm_A ALR3790 protein; rhodanese-like, NSR437H, NESG, structural genomics, protein structure initiative, northeast structural genomics consortium; 2.26A {Nostoc SP} PDB: 2kl3_A Length = 141

 Score = 84.8 bits (210), Expect = 4e-21
 Identities = 29/145 (20%), Positives = 45/145 (31%), Gaps = 45/145 (31%)

Query: 92  VRSVEAKEALRLQKENNFVILDVRPEAEFKEAHPPGAINVQIYRLIKEWTAWDIARRAAF 151
           +      ++     E  F ILDVR  + + + H  GA+ + I  L+              
Sbjct: 1   MSDAHVLKSRLEWGEPAFTILDVRDRSTYNDGHIMGAMAMPIEDLVDR------------ 48

Query: 152 AFFGIFSGTEENPEFLQTGVESQLDKDAKIIVACATGGTMKPSQNLPEGQQSRSLIAAYL 211
                                S L+K   I V  A                 ++  A  L
Sbjct: 49  -------------------ASSSLEKSRDIYVYGAGDE--------------QTSQAVNL 75

Query: 212 LVLNGYKNVYHLEGGLYKWFKEELP 236
           L   G+++V  L+GGL  W     P
Sbjct: 76  LRSAGFEHVSELKGGLAAWKAIGGP 100

>1gmx_A GLPE protein; transferase, rhodanese, sulfurtransferase, glycerol metabolism; 1.1A {Escherichia coli} SCOP: c.46.1.3 PDB: 1gn0_A Length = 108

 Score = 83.8 bits (208), Expect = 5e-21
 Identities = 28/149 (18%), Positives = 48/149 (32%), Gaps = 46/149 (30%)

Query: 91  RVRSVEAKEALRLQKENNFVILDVRPEAEFKEAHPPGAINVQIYRLIKEWTAWDIARRAA 150
           +   +   +A +  +E   V++D+R    F   H   A ++    L              
Sbjct: 3   QFECINVADAHQKLQEKEAVLVDIRDPQSFAMGHAVQAFHLTNDTL-------------- 48

Query: 151 FAFFGIFSGTEENPEFLQTGVESQLDKDAKIIVACATGGTMKPSQNLPEGQQSRSLIAAY 210
                          F++       D D  ++V C  G                S  AA 
Sbjct: 49  -------------GAFMR-----DNDFDTPVMVMCYHGN--------------SSKGAAQ 76

Query: 211 LLVLNGYKNVYHLEGGLYKWFKEELPEVS 239
            L+  GY  VY ++GG   W ++   EV+
Sbjct: 77  YLLQQGYDVVYSIDGGFEAWQRQFPAEVA 105

>2fsx_A RV0390, COG0607: rhodanese-related sulfurtransferase; RV0390 BR SAD DATA with FBAR, structural genomics, PSI; 1.80A {Mycobacterium tuberculosis} Length = 148

 Score = 84.3 bits (208), Expect = 8e-21
 Identities = 26/144 (18%), Positives = 42/144 (29%), Gaps = 26/144 (18%)

Query: 92  VRSVEAKEALR-LQKENNFVILDVRPEAEFKEAHPPGAINVQIYRLIKEWTAWDIARRAA 150
              +   +A   L      V++DVR EAE++    P   ++    +  EW   D      
Sbjct: 4   AGDITPLQAWEMLSDNPRAVLVDVRCEAEWRFVGVPDLSSLGREVVYVEWATSDGTHNDN 63

Query: 151 FAFFGIFSGTEENPEFLQTGVESQLDKDAKIIVACATGGTMKPSQNLPEGQQSRSLIAAY 210
           F             E            +  +I  C +G               RS+ AA 
Sbjct: 64  FL-----------AELRDRIPADADQHERPVIFLCRSGN--------------RSIGAAE 98

Query: 211 LLVLNGYKNVYHLEGGLYKWFKEE 234
           +    G    Y++  G       E
Sbjct: 99  VATEAGITPAYNVLDGFEGHLDAE 122

>1qxn_A SUD, sulfide dehydrogenase; polysulfide-sulfur transferase, homodimer; NMR {Wolinella succinogenes} SCOP: c.46.1.3 Length = 137

 Score = 83.5 bits (207), Expect = 1e-20
 Identities = 35/166 (21%), Positives = 60/166 (36%), Gaps = 48/166 (28%)

Query: 81  KTKRELLLQ--KRVRSVEAKEALRLQKEN-NFVILDVRPEAEFKEAHPPGAIN-VQIYR- 135
            T +  +      +  +  K+A +L +EN +  ++DVR   E K    P   N   + R 
Sbjct: 9   ATFKAQVKAAKADMVMLSPKDAYKLLQENPDITLIDVRDPDELKAMGKPDVKNYKHMSRG 68

Query: 136 LIKEWTAWDIARRAAFAFFGIFSGTEENPEFLQTGVESQLDKDAKIIVACATGGTMKPSQ 195
            ++   A                             +S LD +  ++V C T        
Sbjct: 69  KLEPLLA-----------------------------KSGLDPEKPVVVFCKTAA------ 93

Query: 196 NLPEGQQSRSLIAAYLLVLNGYKNVYHLEGGLYKWFKEELPEVSEE 241
                   R+ +A   L   G+K +Y+ EGG+ KW +E LP +   
Sbjct: 94  --------RAALAGKTLREYGFKTIYNSEGGMDKWLEEGLPSLDRS 131

>1vee_A Proline-rich protein family; hypothetical protein, structural genomics, rhodanese domain, riken structural genomics/proteomics initiative; NMR {Arabidopsis thaliana} PDB: 2dcq_A Length = 134

 Score = 77.7 bits (191), Expect = 2e-18
 Identities = 29/150 (19%), Positives = 52/150 (34%), Gaps = 37/150 (24%)

Query: 92  VRSVEAKEAL-RLQKENNFVILDVRPEAEFKEAHPPGAINVQIYRLIKEWTAWDIARRAA 150
             S  AK A  +L  ++N  +LD+R  A+F++   P    +    +   +   D      
Sbjct: 4   GSSGSAKNAYTKLGTDDNAQLLDIRATADFRQVGSPNIKGLGKKAVSTVYNGED------ 57

Query: 151 FAFFGIFSGTEENPEFLQTGVES-QLDKDAKIIVACATGGTMKPSQNLPEGQQSRSLIAA 209
                        P FL+      +  ++  + +     G               S + A
Sbjct: 58  ------------KPGFLKKLSLKFKDPENTTLYILDKFDG--------------NSELVA 91

Query: 210 YLLVLNGYKNVYHLEGGL---YKWFKEELP 236
            L+ LNG+K+ Y ++ G      W    LP
Sbjct: 92  ELVALNGFKSAYAIKDGAEGPRGWLNSSLP 121

>3nhv_A BH2092 protein; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium, NESG; 2.50A {Bacillus halodurans} PDB: 3o3w_A Length = 144

 Score = 74.4 bits (183), Expect = 4e-17
 Identities = 25/146 (17%), Positives = 44/146 (30%), Gaps = 45/146 (30%)

Query: 96  EAKEALRLQKENNFVILDVRPEAEFKEAHPPGAINVQIYRLIKEWTAWDIARRAAFAFFG 155
           +    ++   E   +++DVR    +KE H P AI++   ++ ++                
Sbjct: 22  DLSIDIKKGYEG-IIVVDVRDAEAYKECHIPTAISIPGNKINED---------------- 64

Query: 156 IFSGTEENPEFLQTGVESQLDKDAKIIVACATGGTMKPSQNLPEGQQSRSLIAAYLLVLN 215
                             +L K+  II  C                 + +  AA      
Sbjct: 65  ---------------TTKRLSKEKVIITYCWGPAC------------NGATKAAAKFAQL 97

Query: 216 GYKNVYHLEGGLYKWFKEELPEVSEE 241
           G+  V  L GG+  W KE        
Sbjct: 98  GF-RVKELIGGIEYWRKENGEVEGTL 122

>1yt8_A Thiosulfate sulfurtransferase; rhodanase domains, cyanide detoxification, structural genomics, PSI, protein structure initiative; 1.90A {Pseudomonas aeruginosa} SCOP: c.46.1.2 c.46.1.2 c.46.1.2 c.46.1.2 Length = 539

 Score = 78.6 bits (193), Expect = 6e-17
 Identities = 29/148 (19%), Positives = 43/148 (29%), Gaps = 45/148 (30%)

Query: 90  KRVRSVEAKEAL-RLQKENNFVILDVRPEAEFKEAHPPGAINVQIYRLIKEWTAWDIARR 148
            ++      +    L       +LDVR E  F +AHP  A N+ + RL +      +   
Sbjct: 4   SQIAVRTFHDIRAALLARRELALLDVREEDPFAQAHPLFAANLPLSRL-ELEIHARVP-- 60

Query: 149 AAFAFFGIFSGTEENPEFLQTGVESQLDKDAKIIVACATGGTMKPSQNLPEGQQSRSLIA 208
                                       +D  I V     G               + +A
Sbjct: 61  ---------------------------RRDTPITVYDDGEG--------------LAPVA 79

Query: 209 AYLLVLNGYKNVYHLEGGLYKWFKEELP 236
           A  L   GY +V  L+GGL  W      
Sbjct: 80  AQRLHDLGYSDVALLDGGLSGWRNAGGE 107

>1yt8_A Thiosulfate sulfurtransferase; rhodanase domains, cyanide detoxification, structural genomics, PSI, protein structure initiative; 1.90A {Pseudomonas aeruginosa} SCOP: c.46.1.2 c.46.1.2 c.46.1.2 c.46.1.2 Length = 539

 Score = 69.8 bits (170), Expect = 5e-14
 Identities = 22/144 (15%), Positives = 39/144 (27%), Gaps = 46/144 (31%)

Query: 93  RSVEAKEALRLQKENNFVILDVRPEAEFKEAHPPGAINVQIYRLIKEWTAWDIARRAAFA 152
            +++         E    +LD    A + + H PGA  V   +L                
Sbjct: 377 DTIDPTTLADWLGEPGTRVLDFTASANYAKRHIPGAAWVLRSQL---------------- 420

Query: 153 FFGIFSGTEENPEFLQTGVESQLDKDAKIIVACATGGTMKPSQNLPEGQQSRSLIAAYLL 212
                       + L      +L    + ++ C +                 +  A   +
Sbjct: 421 -----------KQAL-----ERLGTAERYVLTCGSSL--------------LARFAVAEV 450

Query: 213 VLNGYKNVYHLEGGLYKWFKEELP 236
                K V+ L+GG   W    LP
Sbjct: 451 QALSGKPVFLLDGGTSAWVAAGLP 474

>1yt8_A Thiosulfate sulfurtransferase; rhodanase domains, cyanide detoxification, structural genomics, PSI, protein structure initiative; 1.90A {Pseudomonas aeruginosa} SCOP: c.46.1.2 c.46.1.2 c.46.1.2 c.46.1.2 Length = 539

 Score = 53.6 bits (128), Expect = 2e-08
 Identities = 37/167 (22%), Positives = 48/167 (28%), Gaps = 47/167 (28%)

Query: 67  AATKPAKSPAEEDWKTKRELLLQKR-VRSVEAKE-ALRLQKENNFVILDVRPEAEFKEAH 124
            A            K   EL+  +R   S+ A+E    L      VILD R   E++   
Sbjct: 103 NAGGELFRDVNVPSKAFGELVEAERHTPSLAAEEVQALLDARAEAVILDARRFDEYQTMS 162

Query: 125 PPGAINVQIYRLIKEWTAWDIARRAAFAFFGIFSGTEENPEFLQTGVESQLDKDAKIIVA 184
            PG I+V    L           R A                     E   D   ++IV 
Sbjct: 163 IPGGISVPGAEL---------VLRVA---------------------ELAPDPRTRVIVN 192

Query: 185 CATGGTMKPSQNLPEGQQSRSLIAAYLLVLNGYKNVYH-LEGGLYKW 230
           CA                 RS+I    L+  G  N    L  G   W
Sbjct: 193 CAGRT--------------RSIIGTQSLLNAGIPNPVAALRNGTIGW 225

>1yt8_A Thiosulfate sulfurtransferase; rhodanase domains, cyanide detoxification, structural genomics, PSI, protein structure initiative; 1.90A {Pseudomonas aeruginosa} SCOP: c.46.1.2 c.46.1.2 c.46.1.2 c.46.1.2 Length = 539

 Score = 50.5 bits (120), Expect = 1e-07
 Identities = 24/155 (15%), Positives = 51/155 (32%), Gaps = 47/155 (30%)

Query: 81  KTKRELLLQKRVRSVEAKEALRLQKENN--FVILDVRPEAEFKEAHPPGAINVQIYRLIK 138
           +  R +  +  V  ++     + Q E++    +LDVR   E++  H PG+ +    +L++
Sbjct: 253 QRARAVADRAGVERLDLAGLAQWQDEHDRTTYLLDVRTPEEYEAGHLPGSRSTPGGQLVQ 312

Query: 139 EWTAWDIARRAAFAFFGIFSGTEENPEFLQTGVESQLDKDAKIIVACATGGTMKPSQNLP 198
           E                                     + A++++    G          
Sbjct: 313 ETDHVAS------------------------------VRGARLVLVDDDG---------- 332

Query: 199 EGQQSRSLIAAYLLVLNGYKNVYHLEGGLYKWFKE 233
                R+ ++A  L   G++    L+G     F E
Sbjct: 333 ----VRANMSASWLAQMGWQV-AVLDGLSEADFSE 362

>3gk5_A Uncharacterized rhodanese-related protein TVG0868615; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 2.40A {Thermoplasma volcanium GSS1} Length = 108

 Score = 71.9 bits (177), Expect = 1e-16
 Identities = 34/149 (22%), Positives = 48/149 (32%), Gaps = 49/149 (32%)

Query: 92  VRSVEAKEALRLQKENNFVILDVRPEAEFKEAHPPGAINVQIYRLIKEWTAWDIARRAAF 151
            RS+ A +    +    + +LDVR   E        +IN+ I  L               
Sbjct: 3   YRSINAADLY--ENIKAYTVLDVREPFELIFGSIANSINIPISEL--------------- 45

Query: 152 AFFGIFSGTEENPEFLQTGVESQLDKDAKIIVACATGGTMKPSQNLPEGQQSRSLIAAYL 211
                        E  +      L++D K  V CA G               RS  A   
Sbjct: 46  ------------REKWK-----ILERDKKYAVICAHGN--------------RSAAAVEF 74

Query: 212 LVLNGYKNVYHLEGGLYKWFKEELPEVSE 240
           L   G  N+  +EGG+  W +E  P V E
Sbjct: 75  LSQLGL-NIVDVEGGIQSWIEEGYPVVLE 102

>3foj_A Uncharacterized protein; protein SSP1007, structural genomics, PSI-2, protein structure initiative; 1.60A {Staphylococcus saprophyticus subsp} Length = 100

 Score = 71.1 bits (175), Expect = 3e-16
 Identities = 26/146 (17%), Positives = 43/146 (29%), Gaps = 48/146 (32%)

Query: 92  VRSVEAKE-ALRLQKENNFVILDVRPEAEFKEAHPPGAINVQIYRLIKEWTAWDIARRAA 150
           + S+   E   ++   N   I+DVR + E      PGA  + +           I     
Sbjct: 1   MESITVTELKEKILDANPVNIVDVRTDQETAMGIIPGAETIPMN---------SIPDNL- 50

Query: 151 FAFFGIFSGTEENPEFLQTGVESQLDKDAKIIVACATGGTMKPSQNLPEGQQSRSLIAAY 210
                                 +  + +    + C  GG              RS     
Sbjct: 51  ----------------------NYFNDNETYYIICKAGG--------------RSAQVVQ 74

Query: 211 LLVLNGYKNVYHLEGGLYKWFKEELP 236
            L  NG  N  ++EGG+ ++  E L 
Sbjct: 75  YLEQNGV-NAVNVEGGMDEFGDEGLE 99

>3tp9_A Beta-lactamase and rhodanese domain protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG; 2.70A {Alicyclobacillus acidocaldarius subsp} Length = 474

 Score = 75.4 bits (185), Expect = 6e-16
 Identities = 30/146 (20%), Positives = 46/146 (31%), Gaps = 46/146 (31%)

Query: 91  RVRSVEAKEALRLQKENNFVILDVRPEAEFKEAHPPGAINVQIYRLIKEWTAWDIARRAA 150
              +V   E      +    +LDVR   E+   H P A ++ + +L              
Sbjct: 372 SYANVSPDEVRGALAQQGLWLLDVRNVDEWAGGHLPQAHHIPLSKLAAHI---------- 421

Query: 151 FAFFGIFSGTEENPEFLQTGVESQLDKDAKIIVACATGGTMKPSQNLPEGQQSRSLIAAY 210
                                   + +D  + V C TGG              RS IAA 
Sbjct: 422 ----------------------HDVPRDGSVCVYCRTGG--------------RSAIAAS 445

Query: 211 LLVLNGYKNVYHLEGGLYKWFKEELP 236
           LL  +G  +V ++ GG   W  +  P
Sbjct: 446 LLRAHGVGDVRNMVGGYEAWRGKGFP 471

>1t3k_A Arath CDC25, dual-specificity tyrosine phosphatase; cell cycle, phosphorylation, plant, hydrolase; NMR {Arabidopsis thaliana} SCOP: c.46.1.1 Length = 152

 Score = 71.1 bits (174), Expect = 1e-15
 Identities = 24/157 (15%), Positives = 43/157 (27%), Gaps = 49/157 (31%)

Query: 88  LQKRVRSVEAKEALRLQKENNFVILDVRPEAEFKEAHPPGAINVQIYRLIKEWTAWDIAR 147
           + + +  + + + L L +  N  I+DVR E    + H  G+++                 
Sbjct: 23  MARSISYITSTQLLPLHRRPNIAIIDVRDEERNYDGHIAGSLHYASGSF----------- 71

Query: 148 RAAFAFFGIFSGTEENPEFLQTGVESQLDKDAKIIVACATGGTMKPSQNLPEGQQSRSLI 207
                        ++    +Q      +     ++   A                 R   
Sbjct: 72  ------------DDKISHLVQ-----NVKDKDTLVFHSALSQ-------------VRGPT 101

Query: 208 AAYLLVLN--------GYKNVYHLEGGLYKWFKEELP 236
            A  LV          G KN+  LE G   W     P
Sbjct: 102 CARRLVNYLDEKKEDTGIKNIMILERGFNGWEASGKP 138

>3flh_A Uncharacterized protein LP_1913; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 2.00A {Lactobacillus plantarum} PDB: 3fnj_A 3i3u_A Length = 124

 Score = 66.6 bits (163), Expect = 2e-14
 Identities = 30/142 (21%), Positives = 46/142 (32%), Gaps = 47/142 (33%)

Query: 96  EAKEALRLQKENNFVILDVRP-EAEFKEAHPPGAINVQIYRLIKEWTAWDIARRAAFAFF 154
                ++      +V+LDVR   A+ K+    GAI +            D+A R      
Sbjct: 21  TVLADMQ-NATGKYVVLDVRNAPAQVKKDQIKGAIAMPAK---------DLATRIG---- 66

Query: 155 GIFSGTEENPEFLQTGVESQLDKDAKIIVACATGGTMKPSQNLPEGQQSRSLIAAYLLVL 214
                              +LD     +V   TGGT            +    A  +L+ 
Sbjct: 67  -------------------ELDPAKTYVVYDWTGGT------------TLGKTALLVLLS 95

Query: 215 NGYKNVYHLEGGLYKWFKEELP 236
            G++  Y L G L  W   +LP
Sbjct: 96  AGFE-AYELAGALEGWKGMQLP 116

>1wv9_A Rhodanese homolog TT1651; CDC25, phosphatase, sulfurtransferase, structural genomics, NPPSFA; 2.00A {Thermus thermophilus} Length = 94

 Score = 65.7 bits (161), Expect = 3e-14
 Identities = 26/139 (18%), Positives = 41/139 (29%), Gaps = 49/139 (35%)

Query: 92  VRSVEAKEALRLQKENNFVILDVRPEAEFKEAHPPGAINVQIYRLIKEWTAWDIARRAAF 151
           +R V  +E   L +E   +++DVRP        P  A  V + ++               
Sbjct: 1   MRKVRPEELPALLEEG-VLVVDVRPADRRSTPLPFAAEWVPLEKI--------------- 44

Query: 152 AFFGIFSGTEENPEFLQTGVESQLDKDAKIIVACATGGTMKPSQNLPEGQQSRSLIAAYL 211
                        +         L +   +++ C  G                S +AA  
Sbjct: 45  ------------QKGE-----HGLPRR-PLLLVCEKGL--------------LSQVAALY 72

Query: 212 LVLNGYKNVYHLEGGLYKW 230
           L   GY     LEGGL   
Sbjct: 73  LEAEGY-EAMSLEGGLQAL 90

>3i2v_A Adenylyltransferase and sulfurtransferase MOCS3; rhodanese, UBA4, structural genomics, ubiquitin biology, structural genomics consortium, SGC; 1.25A {Homo sapiens} Length = 127

 Score = 65.9 bits (161), Expect = 4e-14
 Identities = 28/149 (18%), Positives = 43/149 (28%), Gaps = 37/149 (24%)

Query: 91  RVRSVEAKEALRLQKENNFVILDVRPEAEFKEAHPPGAINVQIYRLIKEWTAWDIARRAA 150
           RV   + K    L      ++LDVRP+ E      P A+++ +           + RR A
Sbjct: 2   RVSVTDYKR--LLDSGAFHLLLDVRPQVEVDICRLPHALHIPL---------KHLERRDA 50

Query: 151 FAFFGIFSGTEENPEFLQTGVESQLDKDAKIIVACATGGTMKPSQNLPEGQQSRSLIAAY 210
            +               +    +Q      I V C  G                S  A  
Sbjct: 51  ESL------KLLKEAIWEEKQGTQEGAAVPIYVICKLGN--------------DSQKAVK 90

Query: 211 LLVLNGYK------NVYHLEGGLYKWFKE 233
           +L             V  + GGL  W  +
Sbjct: 91  ILQSLSAAQELDPLTVRDVVGGLMAWAAK 119

>2jtq_A Phage shock protein E; solution structure rhodanese, stress response, transferase; NMR {Escherichia coli} PDB: 2jtr_A 2jts_A Length = 85

 Score = 63.7 bits (156), Expect = 1e-13
 Identities = 24/121 (19%), Positives = 40/121 (33%), Gaps = 45/121 (37%)

Query: 110 VILDVRPEAEFKEAHPPGAINVQIYRLIKEWTAWDIARRAAFAFFGIFSGTEENPEFLQT 169
             +DVR   ++++ H  GAIN+ +          ++  R A                   
Sbjct: 3   HWIDVRVPEQYQQEHVQGAINIPLK---------EVKERIA------------------- 34

Query: 170 GVESQLDKDAKIIVACATGGTMKPSQNLPEGQQSRSLIAAYLLVLNGYKNVYHLEGGLYK 229
              +  DK+  + V C  G               +S  A  +L   GY +V +  GGL  
Sbjct: 35  --TAVPDKNDTVKVYCNAGR--------------QSGQAKEILSEMGYTHVENA-GGLKD 77

Query: 230 W 230
            
Sbjct: 78  I 78

>3r2u_A Metallo-beta-lactamase family protein; structural genomics, for structural genomics of infectious diseases, csgid, HYDR; 2.10A {Staphylococcus aureus} Length = 466

 Score = 65.8 bits (160), Expect = 1e-12
 Identities = 25/126 (19%), Positives = 39/126 (30%), Gaps = 46/126 (36%)

Query: 105 KENNFVILDVRPEAEFKEAHPPGAINVQIYRLIKEWTAWDIARRAAFAFFGIFSGTEENP 164
             N   ILDVR + E+   H   A++V   +L++                          
Sbjct: 384 TGNESHILDVRNDNEWNNGHLSQAVHVPHGKLLETD------------------------ 419

Query: 165 EFLQTGVESQLDKDAKIIVACATGGTMKPSQNLPEGQQSRSLIAAYLLVLNGYKNVYHLE 224
                      +K+  I V C +G               RS IA  +L   GY N+ ++ 
Sbjct: 420 --------LPFNKNDVIYVHCQSGI--------------RSSIAIGILEHKGYHNIINVN 457

Query: 225 GGLYKW 230
            G    
Sbjct: 458 EGYKDI 463

>3ics_A Coenzyme A-disulfide reductase; pyridine nucleotide-disulfide oxidoreductase class I, rhodan coenzyme A, flavin adenine dinucleotide; HET: FAD COA ADP; 1.94A {Bacillus anthracis} PDB: 3icr_A* 3ict_A* Length = 588

 Score = 63.8 bits (156), Expect = 6e-12
 Identities = 32/151 (21%), Positives = 54/151 (35%), Gaps = 49/151 (32%)

Query: 87  LLQKRVRSVEAKEALRLQKENNFVILDVRPEAEFKEAHPPGAINVQIYRLIKEWTAWDIA 146
           ++   V +V+  E +    EN   ++DVR   E K+    G+IN+ +  L          
Sbjct: 483 IVDGFVDTVQWHE-IDRIVENGGYLIDVREPNELKQGMIKGSINIPLDEL---------- 531

Query: 147 RRAAFAFFGIFSGTEENPEFLQTGVESQLDKDAKIIVACATGGTMKPSQNLPEGQQSRSL 206
            R                         ++  D  I + C  G               R  
Sbjct: 532 -RDRL---------------------EEVPVDKDIYITCQLG--------------MRGY 555

Query: 207 IAAYLLVLNGYKNVYHLEGGLYKWFKEELPE 237
           +AA +L+  GY  V +++GG +K +   LPE
Sbjct: 556 VAARMLMEKGY-KVKNVDGG-FKLYGTVLPE 584

>3g5j_A Putative ATP/GTP binding protein; N-terminal domain of ATP/GTP binding protein, PSI, MCSG, STR genomics, protein structure initiative; HET: PGE; 1.76A {Clostridium difficile} Length = 134

 Score = 60.5 bits (146), Expect = 6e-12
 Identities = 32/148 (21%), Positives = 52/148 (35%), Gaps = 21/148 (14%)

Query: 94  SVEAKEALRLQKENNFVILDVRPEAEFKEAHPPGAINVQIY----RLIKEWTAWDIARRA 149
           ++   +  +  K +  + +DVR E E++E H   AIN+ ++                +  
Sbjct: 3   AMSVIKIEKALKLDKVIFVDVRTEGEYEEDHILNAINMPLFKNNEHNEVGTIYKMQGKHE 62

Query: 150 AFAFFGIFSGTEENPEFLQTGVESQLDKDAKIIVACATGGTMKPSQNLPEGQQSRSLIAA 209
           A      F       + +             I++ CA GG              RS    
Sbjct: 63  AIQK--GFDYVSYKLKDIYLQAAELALNYDNIVIYCARGG-------------MRSGSIV 107

Query: 210 YLLVLNGYKNVYHLEGGLYKWFKEELPE 237
            LL   G   VY LEGG YK ++  + E
Sbjct: 108 NLLSSLGVN-VYQLEGG-YKAYRNFVLE 133

>2j6p_A SB(V)-AS(V) reductase; arsenate reductase, antimonate reductase, CDC25 phosphatase, rhodanese, C-MYC epitope, oxidoreductase; HET: EPE; 2.15A {Leishmania major} Length = 152

 Score = 57.0 bits (137), Expect = 1e-10
 Identities = 18/146 (12%), Positives = 34/146 (23%), Gaps = 36/146 (24%)

Query: 90  KRVRSVEAKEALRLQKE-NNFVILDVRPEAEFKEAHPPGAINVQIYRLIKEWTAWDIARR 148
             ++  E  E L          ++D R   +        +IN+      +E         
Sbjct: 5   TYIKPEELVELLDNPDSLVKAAVIDCRDS-DRDCGFIVNSINMPTISCTEE--------- 54

Query: 149 AAFAFFGIFSGTEENPEFLQTGVESQLDKDAKIIVACATGGTMKPSQNLPEGQQSRSLIA 208
                            + +       +K    +  CA               +  +  A
Sbjct: 55  ----------------MYEKLAKTLFEEKKELAVFHCAQSLV--------RAPKGANRFA 90

Query: 209 AYLLVLN-GYKNVYHLEGGLYKWFKE 233
                L      VY L GG   ++  
Sbjct: 91  LAQKKLGYVLPAVYVLRGGWEAFYHM 116

>1c25_A CDC25A; hydrolase, cell cycle phosphatase,dual specificity protein phosphatase, CDK2; 2.30A {Homo sapiens} SCOP: c.46.1.1 Length = 161

 Score = 56.6 bits (136), Expect = 3e-10
 Identities = 22/130 (16%), Positives = 42/130 (32%), Gaps = 28/130 (21%)

Query: 104 QKENNFVILDVRPEAEFKEAHPPGAINVQIYRLIKEWTAWDIARRAAFAFFGIFSGTEEN 163
                FVI+D R   E++  H  GA+N+ +   +++                        
Sbjct: 40  NLIKEFVIIDCRYPYEYEGGHIKGAVNLHMEEEVED------------------------ 75

Query: 164 PEFLQTGVESQLDKDAKIIVACATGGTMKPSQNLPEGQQSRSLIAAYLLVLNGYKNVYHL 223
              L+  +     K   ++  C       P       ++ R       L    Y  +Y L
Sbjct: 76  -FLLKKPIVPTDGKRVIVVFHCEFSSERGPRMCRYVRERDRLGNEYPKL---HYPELYVL 131

Query: 224 EGGLYKWFKE 233
           +GG  ++F +
Sbjct: 132 KGGYKEFFMK 141

>3ntd_A FAD-dependent pyridine nucleotide-disulphide oxidoreductase; COA, persulfide reductase, rhodanese; HET: COA FAD; 1.99A {Shewanella loihica} PDB: 3nta_A* 3nt6_A* Length = 565

 Score = 58.4 bits (142), Expect = 3e-10
 Identities = 27/144 (18%), Positives = 47/144 (32%), Gaps = 49/144 (34%)

Query: 87  LLQKRVRSVEAKEALRLQKENNFVILDVRPEAEFKEAHPPGAINVQIYRLIKEWTAWDIA 146
           +++     +   +   L +  + ++LDVR   E +     GA+N+ +  L          
Sbjct: 467 IIKGDATPIHFDQIDNLSE--DQLLLDVRNPGELQNGGLEGAVNIPVDEL---------- 514

Query: 147 RRAAFAFFGIFSGTEENPEFLQTGVESQLDKDAKIIVACATGGTMKPSQNLPEGQQSRSL 206
            R                         +L KD +II+    G               R  
Sbjct: 515 -RDRM---------------------HELPKDKEIIIFSQVG--------------LRGN 538

Query: 207 IAAYLLVLNGYKNVYHLEGGLYKW 230
           +A   LV NGY+   +L GG   +
Sbjct: 539 VAYRQLVNNGYR-ARNLIGGYRTY 561

>3f4a_A Uncharacterized protein YGR203W; protein phosphatase, rhodanese-like family, structural genomics, PSI-2, protein structure initiative; HET: MSE; 1.80A {Saccharomyces cerevisiae} PDB: 3fs5_A* Length = 169

 Score = 54.0 bits (129), Expect = 2e-09
 Identities = 24/161 (14%), Positives = 43/161 (26%), Gaps = 38/161 (23%)

Query: 90  KRVRSVEAKEALRLQKEN----NFVILDVRPEAEFKEAHPPGAINVQIYRLIKEWTAWDI 145
           K +   E    ++          F ++DVR   ++   H     +    RL ++      
Sbjct: 31  KYLDPTELHRWMQEGHTTTLREPFQVVDVRGS-DYMGGHIKDGWHYAYSRLKQDP----- 84

Query: 146 ARRAAFAFFGIFSGTEENPEFLQTGVESQLDKDAK--IIVACATGGTMKPSQNLPEGQQS 203
                          E   E     +E Q D      +I  C              G  +
Sbjct: 85  ---------------EYLRELKHRLLEKQADGRGALNVIFHCMLSQQ--------RGPSA 121

Query: 204 RSLIAAYLLVLN-GYKNVYHLEGGLYKWFKE--ELPEVSEE 241
             L+   L         ++ L GG  +W     +   V+  
Sbjct: 122 AMLLLRSLDTAELSRCRLWVLRGGFSRWQSVYGDDESVTAG 162

>2a2k_A M-phase inducer phosphatase 2; dual specificity, substrate trapping, active site mutant, hydrolase; 1.52A {Homo sapiens} PDB: 2ifv_A 1ymd_A 1ym9_A 1ymk_A 1yml_A 1ys0_A 1cwt_A 2ifd_A Length = 175

 Score = 53.8 bits (129), Expect = 3e-09
 Identities = 30/154 (19%), Positives = 47/154 (30%), Gaps = 31/154 (20%)

Query: 90  KRVRSVEAKEALR---LQKENNFVILDVRPEAEFKEAHPPGAINVQIYRLIKEWTAWDIA 146
           K +        L        + FVI+D R   E++  H   A+N+ + R           
Sbjct: 24  KYISPETMVALLTGKFSNIVDKFVIVDCRYPYEYEGGHIKTAVNLPLERDA--------- 74

Query: 147 RRAAFAFFGIFSGTEENPEFLQTGVESQLDKDAKIIVACATGGTMKPSQNLPEGQQSRSL 206
                          E+           LDK   +I          P       ++ R++
Sbjct: 75  ---------------ESFLLKSPIAPCSLDKRVILIFHSEFSSERGPRMCRFIRERDRAV 119

Query: 207 IAAYLLVLNGYKNVYHLEGGLYKWFKEELPEVSE 240
                L    Y  +Y L+GG YK F  + P   E
Sbjct: 120 NDYPSL---YYPEMYILKGG-YKEFFPQHPNFCE 149

>1qb0_A Protein (M-phase inducer phosphatase 2 (CDC25B)); hydrolase, cell cycle phosphatase, dual specificity protein phosphatase; 1.91A {Homo sapiens} SCOP: c.46.1.1 PDB: 1cwr_A 1cws_A 2uzq_A Length = 211

 Score = 51.6 bits (123), Expect = 3e-08
 Identities = 28/147 (19%), Positives = 42/147 (28%), Gaps = 48/147 (32%)

Query: 104 QKENNFVILDVRPEAEFKEAHPPGAINVQIYRLIKEWTAWDIARRAAFAFFGIFSGTEEN 163
              + FVI+D R   E++  H   A+N+ + R                          E+
Sbjct: 61  NIVDKFVIVDCRYPYEYEGGHIKTAVNLPLERDA------------------------ES 96

Query: 164 PEFLQTGVESQLDKDAKIIVACATGGTMKPSQNLPEGQQSRSLIAAYLL-----VLN--- 215
                      LDK   +I  C                  R       +      +N   
Sbjct: 97  FLLKSPIAPCSLDKRVILIFHCEFSSE-------------RGPRMCRFIRERDRAVNDYP 143

Query: 216 --GYKNVYHLEGGLYKWFKEELPEVSE 240
              Y  +Y L+GG YK F  + P   E
Sbjct: 144 SLYYPEMYILKGG-YKEFFPQHPNFCE 169

>3op3_A M-phase inducer phosphatase 3; structural genomics, structural genomics consortium, SGC, Al alpha sandwich, kinase, cytosol, hydrolase; 2.63A {Homo sapiens} Length = 216

 Score = 48.6 bits (115), Expect = 3e-07
 Identities = 29/159 (18%), Positives = 45/159 (28%), Gaps = 41/159 (25%)

Query: 90  KRVRSVEAKEALRLQKEN---NFVILDVRPEAEFKEAHPPGAINVQIYRLIKEWTAWDIA 146
           K V        L  + +     F ++D R   E+   H  GA+N+     +         
Sbjct: 57  KYVNPETVAALLSGKFQGLIEKFYVIDCRYPYEYLGGHIQGALNLYSQEEL--------- 107

Query: 147 RRAAFAFFGIFSGTEENPEFLQTGVESQLDKDAKIIVACATGGTMKPSQNLPEGQQSRSL 206
                           N    +  V     K   I+  C              G +    
Sbjct: 108 ---------------FNFFLKKPIVPLDTQKRIIIVFHCEFSSE--------RGPRMCRC 144

Query: 207 IAAYLLVLN-----GYKNVYHLEGGLYKWFKEELPEVSE 240
           +      LN      Y  +Y L+GG Y+ F  E  E+ E
Sbjct: 145 LREEDRSLNQYPALYYPELYILKGG-YRDFFPEYMELCE 182

>4f67_A UPF0176 protein LPG2838; structural genomics, PSI-biology, protein structure initiati northeast structural genomics consortium; 1.79A {Legionella pneumophila subsp} Length = 265

 Score = 45.7 bits (109), Expect = 4e-06
 Identities = 29/145 (20%), Positives = 50/145 (34%), Gaps = 52/145 (35%)

Query: 95  VEAKEALRLQKENNFVILDVRPEAEFKEAHPPGAINVQIYRLIKEWTAWDIARRAAFAFF 154
           +  +E  +  ++ N ++LD R + E++      AIN  I                 F  F
Sbjct: 124 LSPEEWHQFIQDPNVILLDTRNDYEYELGTFKNAINPDI---------------ENFREF 168

Query: 155 GIFSGTEENPEFLQTGVESQLD--KDAKIIVACATGGTMKPSQNLPEGQQSRSLI----A 208
                    P++    V+  L   KD KI + C TGG                 I     
Sbjct: 169 ---------PDY----VQRNLIDKKDKKIAMFC-TGG-----------------IRCEKT 197

Query: 209 AYLLVLNGYKNVYHLEGGLYKWFKE 233
              +   G+++VY L  G+  + + 
Sbjct: 198 TAYMKELGFEHVYQLHDGILNYLES 222

>2ouc_A Dual specificity protein phosphatase 10; rhodanese fold, hydrolase; 2.20A {Homo sapiens} Length = 142

 Score = 43.5 bits (102), Expect = 7e-06
 Identities = 23/141 (16%), Positives = 43/141 (30%), Gaps = 18/141 (12%)

Query: 97  AKEALRLQKENNFVILDVRPEAEFKEAHPPGAINVQIYRLIKEWTAWDIARRAAFAFFGI 156
            K +         VI+D RP  E+ ++H  GA+++     I         RR       +
Sbjct: 13  TKCSKSHLPSQGPVIIDCRPFMEYNKSHIQGAVHINCADKI-------SRRRLQQGKITV 65

Query: 157 FSGTEENPEFLQTGVESQLDKDAKIIVACATGGTMKPSQNLPEGQQSRSLIAAYLLVLNG 216
                +     +     +     +IIV             +   Q    ++ +   +   
Sbjct: 66  ----LDLISCREGKDSFKRIFSKEIIVYD---ENTNEPSRVMPSQPLHIVLES---LKRE 115

Query: 217 YKNVYHLEGGLYKWFKEELPE 237
            K    L+GG    FK+    
Sbjct: 116 GKEPLVLKGG-LSSFKQNHEN 135

>2vsw_A Dual specificity protein phosphatase 16; hydrolase, dual specificity phosphatase, nucleus, cytoplasm, rhodanese domain, CAsp8; 2.20A {Homo sapiens} PDB: 3tg3_A Length = 153

 Score = 43.3 bits (101), Expect = 1e-05
 Identities = 25/155 (16%), Positives = 50/155 (32%), Gaps = 21/155 (13%)

Query: 87  LLQKRVRSVEAKEALRLQKENNFVILDVRPEAEFKEAHPPGAINVQIYRLIKEWTAWDIA 146
           ++  ++ +      L        +++D RP  E+  +H   AIN+   +L+K        
Sbjct: 1   MIGTQIVTERLVALLE-SGTEKVLLIDSRPFVEYNTSHILEAININCSKLMKRRL----- 54

Query: 147 RRAAFAFFGIFSGTEENPEFLQTGVESQLDKDAKIIVACATGGTMKPSQNLPEGQQSRSL 206
                             E +Q   + ++D D    V      +     +L        L
Sbjct: 55  ----------QQDKVLITELIQHSAKHKVDIDCSQKVVVYDQSSQD-VASLSSDCFLTVL 103

Query: 207 IAAYLLVLNGYKNVYHLEGGLYKWFKEELPEVSEE 241
           +         + +V+ L GG +  F    P + E 
Sbjct: 104 LGKL---EKSFNSVHLLAGG-FAEFSRCFPGLCEG 134

>3tg1_B Dual specificity protein phosphatase 10; kinase/rhodanese-like domain, docking interaction, transfera hydrolase complex; 2.71A {Homo sapiens} Length = 158

 Score = 42.8 bits (100), Expect = 2e-05
 Identities = 26/135 (19%), Positives = 40/135 (29%), Gaps = 24/135 (17%)

Query: 106 ENNFVILDVRPEAEFKEAHPPGAINVQIYRLIKEWTAWDIARRAAF---AFFGIFSGTEE 162
               VI+D RP  E+ ++H  GA+++     I         RR          + S  E 
Sbjct: 32  SQGPVIIDCRPFMEYNKSHIQGAVHINCADKI-------SRRRLQQGKITVLDLISCREG 84

Query: 163 NPEFLQTGVESQLDKDAKIIVACATGGTMKPSQNLPEGQQSRSLIAAYLLVLNGYKNVYH 222
              F       +     +IIV                  Q   ++   L      K    
Sbjct: 85  KDSF-------KRIFSKEIIVYDENTNEPSRVMP----SQPLHIVLESL--KREGKEPLV 131

Query: 223 LEGGLYKWFKEELPE 237
           L+GG    FK+    
Sbjct: 132 LKGG-LSSFKQNHEN 145

>1e0c_A Rhodanese, sulfurtransferase; sulfur metabolism, thiosulfate:cyanide sulfurtransferase; 1.8A {Azotobacter vinelandii} SCOP: c.46.1.2 c.46.1.2 PDB: 1h4k_X 1h4m_X Length = 271

 Score = 42.9 bits (102), Expect = 3e-05
 Identities = 28/156 (17%), Positives = 42/156 (26%), Gaps = 44/156 (28%)

Query: 95  VEAKEALRLQKENNFVILDVRPEAEFKEAHPPGAINVQIYRLIKEWTAW--DIARRAAFA 152
           +E  +          +++D+   A + E H PGA  V   R              R    
Sbjct: 11  IEPADLQARLSAPELILVDLTSAARYAEGHIPGARFVDPKRTQLGQPPAPGLQPPREQLE 70

Query: 153 ----FFGIFSGTEENPEFLQTGVESQLDKDAKIIVACATGGTMKPSQNLPEGQQSRSLIA 208
                 G                      +A  +V    GG                  A
Sbjct: 71  SLFGELGH-------------------RPEAVYVVYDDEGGGW----------------A 95

Query: 209 AY---LLVLNGYKNVYHLEGGLYKWFKEELPEVSEE 241
                LL + G +  ++L GGL  W  E+ P   E 
Sbjct: 96  GRFIWLLDVIGQQRYHYLNGGLTAWLAEDRPLSREL 131

>1hzm_A Dual specificity protein phosphatase 6; hydrolase; NMR {Homo sapiens} SCOP: c.46.1.1 Length = 154

 Score = 40.5 bits (94), Expect = 1e-04
 Identities = 22/131 (16%), Positives = 45/131 (34%), Gaps = 17/131 (12%)

Query: 107 NNFVILDVRPEAEFKEAHPPGAINVQIYRLIKEWTAWDIARRAAFAFFGIFSGTEENPEF 166
              +++D RP+  ++ +H   AINV I  ++            A     +F+  E+   F
Sbjct: 32  ERLLLMDCRPQELYESSHIESAINVAIPGIMLRRLQKGNLPVRA-----LFTRGEDRDRF 86

Query: 167 LQTGVESQLDKDAKIIVACATGGTMKPSQNLPEGQQSRSLIAAYLLVLNGYKNVYHLEGG 226
            +        +     V      +   ++N         L+       +     ++LEGG
Sbjct: 87  TR--------RCGTDTVVLYDESSSDWNENTGGESLLGLLLKKL---KDEGCRAFYLEGG 135

Query: 227 LYKWFKEELPE 237
            +  F+ E   
Sbjct: 136 -FSKFQAEFSL 145

>1whb_A KIAA0055; deubiqutinating enzyme, UBPY, structural genomics, riken structural genomics/proteomics initiative, RSGI, hydrolase; NMR {Homo sapiens} SCOP: c.46.1.4 Length = 157

 Score = 40.1 bits (93), Expect = 2e-04
 Identities = 25/172 (14%), Positives = 51/172 (29%), Gaps = 36/172 (20%)

Query: 66  NAATKPAKSPAEEDWKTKRELLLQKRVRSVEAKEALRLQKENNFVILDVRPEAEFKEAHP 125
           ++ +       E+   T +EL              +   K  + +I+D R   +++++  
Sbjct: 2   SSGSSGKCETKEKGAITAKEL-----------YTMMT-DKNISLIIMDARRMQDYQDSCI 49

Query: 126 PGAINVQIYRLIKEWTAWDIARRAAFAFFGIFSGTEENPEFLQTGVESQLDKDAKIIVAC 185
             +++V    +    TA  I               E +          +      +++  
Sbjct: 50  LHSLSVPEEAISPGVTASWI---------------EAHLPDDSKDTWKKRGNVEYVVLLD 94

Query: 186 ATGGTMKPSQNLPEGQQSRSLIAAYLLVLNGYKN----VYHLEGGLYKWFKE 233
                   +++L  G   RSL  A L               LEGG   W   
Sbjct: 95  WFSS----AKDLQIGTTLRSLKDA-LFKWESKTVLRNEPLVLEGGYENWLLC 141

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 39.8 bits (92), Expect = 6e-04
 Identities = 44/280 (15%), Positives = 79/280 (28%), Gaps = 68/280 (24%)

Query: 6   SVSQLHSS------LSSLY----PNYRSSPLILA-PKTNQDTTICCLTVRSFTFSRRRLS 54
           ++   +S       L  L     PN+ S     +  K    +    L        RR L 
Sbjct: 188 NLKNCNSPETVLEMLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQAEL--------RRLLK 239

Query: 55  SQSVPRGLII----QNAA--------------TKPAKSPAEEDWKTKRELLLQKRVRSVE 96
           S+     L++    QNA               T+  +        T   + L     ++ 
Sbjct: 240 SKPYENCLLVLLNVQNAKAWNAFNLSCKILLTTRFKQVTDFLSAATTTHISLDHHSMTLT 299

Query: 97  AKEALRLQKENNFV-ILDVRPEAEFKEAHP--PGAINVQIYRLIKEWTA-WDIARRAAF- 151
             E   L      +  LD RP+   +E     P  +++ I   I++  A WD  +     
Sbjct: 300 PDEVKSL-----LLKYLDCRPQDLPREVLTTNPRRLSI-IAESIRDGLATWDNWKHVNCD 353

Query: 152 -------AFFGIFSGTEENPEFLQTGVESQLDKDAKI--IVACATGGTMKPS--QNLPEG 200
                  +   +    E    F +  V       A I  I+       +  S    +   
Sbjct: 354 KLTTIIESSLNVLEPAEYRKMFDRLSV---FPPSAHIPTILLSLIWFDVIKSDVMVVVNK 410

Query: 201 QQSRSLIAAYLLVLNGYKNVYHLEGGLYKWFKEELPEVSE 240
               SL+          ++   +   +Y   K +L     
Sbjct: 411 LHKYSLVE-----KQPKESTISIP-SIYLELKVKLENEYA 444

>2gwf_A Ubiquitin carboxyl-terminal hydrolase 8; protein-protein complex, E3 ligase, protein ubiquitination, hydrolase, protease, UBL conjugation pathway; 2.30A {Homo sapiens} SCOP: c.46.1.4 Length = 157

 Score = 37.7 bits (87), Expect = 9e-04
 Identities = 25/155 (16%), Positives = 56/155 (36%), Gaps = 26/155 (16%)

Query: 85  ELLLQKRVRSVEAKEALRL--QKENNFVILDVRPEAEFKEAHPPGAINVQIYRLIKEWTA 142
             L+ +   ++ AKE   +   K  + +I+D R   +++++    +++V    +    TA
Sbjct: 12  SGLVPRGSGAITAKELYTMMTDKNISLIIMDARRMQDYQDSCILHSLSVPEEAISPGVTA 71

Query: 143 WDIARRAAFAFFGIFSGTEENPEFLQTGVESQLDKDAKIIVACATGGTMKPSQNLPEGQQ 202
             I                  P+  +   + + + +  +++          +++L  G  
Sbjct: 72  SWIEAHL--------------PDDSKDTWKKRGNVEY-VVLLDWFS----SAKDLQIGTT 112

Query: 203 SRSLIAAYLLVLNGYKNVYH----LEGGLYKWFKE 233
            RSL  A L        + +    LEGG   W   
Sbjct: 113 LRSLKDA-LFKWESKTVLRNEPLVLEGGYENWLLC 146

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	241
3iwh_A	103	Rhodanese-like domain protein; alpha-beta-alpha sa	99.94
3eme_A	103	Rhodanese-like domain protein; alpha-beta-alpha sa	99.93
3foj_A	100	Uncharacterized protein; protein SSP1007, structur	99.93
1gmx_A	108	GLPE protein; transferase, rhodanese, sulfurtransf	99.93
3gk5_A	108	Uncharacterized rhodanese-related protein TVG08686	99.92
1tq1_A	129	AT5G66040, senescence-associated family protein; C	99.92
2hhg_A	139	Hypothetical protein RPA3614; MCSG, structural gen	99.92
1qxn_A	137	SUD, sulfide dehydrogenase; polysulfide-sulfur tra	99.92
3d1p_A	139	Putative thiosulfate sulfurtransferase YOR285W; at	99.92
3ilm_A	141	ALR3790 protein; rhodanese-like, NSR437H, NESG, st	99.91
3nhv_A	144	BH2092 protein; alpha-beta protein, structural gen	99.91
3hix_A	106	ALR3790 protein; rhodanese, rhodanese_3, Q8YQN0, Q	99.91
3flh_A	124	Uncharacterized protein LP_1913; alpha-beta protei	99.9
1wv9_A	94	Rhodanese homolog TT1651; CDC25, phosphatase, sulf	99.9
2k0z_A	110	Uncharacterized protein HP1203; A/B domain, struct	99.89
1t3k_A	152	Arath CDC25, dual-specificity tyrosine phosphatase	99.87
2fsx_A	148	RV0390, COG0607: rhodanese-related sulfurtransfera	99.87
3i2v_A	127	Adenylyltransferase and sulfurtransferase MOCS3; r	99.87
1vee_A	134	Proline-rich protein family; hypothetical protein,	99.86
1urh_A	280	3-mercaptopyruvate sulfurtransferase; rhodanese; 2	99.86
1e0c_A	271	Rhodanese, sulfurtransferase; sulfur metabolism, t	99.86
1e0c_A	271	Rhodanese, sulfurtransferase; sulfur metabolism, t	99.86
3g5j_A	134	Putative ATP/GTP binding protein; N-terminal domai	99.85
3hzu_A	318	Thiosulfate sulfurtransferase SSEA; niaid, ssgcid,	99.85
2jtq_A	85	Phage shock protein E; solution structure rhodanes	99.85
1c25_A	161	CDC25A; hydrolase, cell cycle phosphatase,dual spe	99.84
1rhs_A	296	Sulfur-substituted rhodanese; transferase, sulfurt	99.84
3aay_A	277	Putative thiosulfate sulfurtransferase; sulfurtran	99.83
2ouc_A	142	Dual specificity protein phosphatase 10; rhodanese	99.83
4f67_A	265	UPF0176 protein LPG2838; structural genomics, PSI-	99.83
1rhs_A	296	Sulfur-substituted rhodanese; transferase, sulfurt	99.83
1uar_A	285	Rhodanese; sulfurtransferase, riken structural gen	99.83
1urh_A	280	3-mercaptopyruvate sulfurtransferase; rhodanese; 2	99.83
3hzu_A	318	Thiosulfate sulfurtransferase SSEA; niaid, ssgcid,	99.83
3aay_A	277	Putative thiosulfate sulfurtransferase; sulfurtran	99.83
2a2k_A	175	M-phase inducer phosphatase 2; dual specificity, s	99.83
1qb0_A	211	Protein (M-phase inducer phosphatase 2 (CDC25B));	99.83
1uar_A	285	Rhodanese; sulfurtransferase, riken structural gen	99.83
2vsw_A	153	Dual specificity protein phosphatase 16; hydrolase	99.82
3olh_A	302	MST, 3-mercaptopyruvate sulfurtransferase; structu	99.82
3olh_A	302	MST, 3-mercaptopyruvate sulfurtransferase; structu	99.82
3tp9_A	474	Beta-lactamase and rhodanese domain protein; struc	99.82
2j6p_A	152	SB(V)-AS(V) reductase; arsenate reductase, antimon	99.8
1yt8_A	539	Thiosulfate sulfurtransferase; rhodanase domains,	99.8
2eg4_A	230	Probable thiosulfate sulfurtransferase; structural	99.8
1yt8_A	539	Thiosulfate sulfurtransferase; rhodanase domains,	99.79
3op3_A	216	M-phase inducer phosphatase 3; structural genomics	99.79
3f4a_A	169	Uncharacterized protein YGR203W; protein phosphata	99.79
2wlr_A	423	Putative thiosulfate sulfurtransferase YNJE; rhoda	99.79
2wlr_A	423	Putative thiosulfate sulfurtransferase YNJE; rhoda	99.78
1okg_A	373	Possible 3-mercaptopyruvate sulfurtransferase; rho	99.78
3tg1_B	158	Dual specificity protein phosphatase 10; kinase/rh	99.76
1hzm_A	154	Dual specificity protein phosphatase 6; hydrolase;	99.76
3ntd_A	565	FAD-dependent pyridine nucleotide-disulphide oxido	99.73
3ics_A	588	Coenzyme A-disulfide reductase; pyridine nucleotid	99.73
1whb_A	157	KIAA0055; deubiqutinating enzyme, UBPY, structural	99.72
2gwf_A	157	Ubiquitin carboxyl-terminal hydrolase 8; protein-p	99.72
3utn_X	327	Thiosulfate sulfurtransferase TUM1; rhodanese-like	99.71
1okg_A	373	Possible 3-mercaptopyruvate sulfurtransferase; rho	99.7
2eg4_A	230	Probable thiosulfate sulfurtransferase; structural	99.67
3r2u_A	466	Metallo-beta-lactamase family protein; structural	99.65
3utn_X	327	Thiosulfate sulfurtransferase TUM1; rhodanese-like	99.65
3tp9_A	474	Beta-lactamase and rhodanese domain protein; struc	99.62
3r2u_A	466	Metallo-beta-lactamase family protein; structural	99.28
2f46_A	156	Hypothetical protein; structural genomics, joint c	97.48
4erc_A	150	Dual specificity protein phosphatase 23; alpha bet	92.2
1v8c_A	168	MOAD related protein; riken structural genomics/pr	92.16
2img_A	151	Dual specificity protein phosphatase 23; DUSP23, V	86.27
2hcm_A	164	Dual specificity protein phosphatase; structural g	81.8

>3iwh_A Rhodanese-like domain protein; alpha-beta-alpha sandwich, structural genomics, C structural genomics of infectious diseases, csgid; 2.00A {Staphylococcus aureus subsp} PDB: 3mzz_A

Probab=99.94  E-value=6.9e-27  Score=178.58  Aligned_cols=101  Identities=27%  Similarity=0.340  Sum_probs=89.4

Q ss_pred             cccccHHHHHHHhcCC-CeEEEEcCChhhhhhCCCCCCeeechhhHHhhhhhHHHHHHhhhhhccccCCCCCChHHHhhh
Q 026264           92 VRSVEAKEALRLQKEN-NFVILDVRPEAEFKEAHPPGAINVQIYRLIKEWTAWDIARRAAFAFFGIFSGTEENPEFLQTG  170 (241)
Q Consensus        92 ~~~Is~~el~~~l~~~-~~~lIDvR~~~Ey~~ghIpGAinip~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  170 (241)
                      ++.|+++|+.+.+.++ +++|||||++.||..||||||+|||+..+.+                                
T Consensus         1 ~k~Is~~el~~~l~~~~~~~liDvR~~~e~~~ghIpgA~~ip~~~l~~--------------------------------   48 (103)
T 3iwh_A            1 MKSITTDELKNKLLESKPVQIVDVRTDEETAMGYIPNAKLIPMDTIPD--------------------------------   48 (103)
T ss_dssp             CCEECHHHHHHGGGSSSCCEEEECSCHHHHTTCBCTTCEECCGGGGGG--------------------------------
T ss_pred             CCCcCHHHHHHHHhCCCCeEEEECCChhHHhcCccCCcccCcccchhh--------------------------------
Confidence            3579999999987654 6899999999999999999999999987654                                


Q ss_pred             hhcCCCCCCeEEEEcCCCCCCCCCCCCCCchhhHHHHHHHHHHHcCCcceeEccccHHHHHhCCCCccc
Q 026264          171 VESQLDKDAKIIVACATGGTMKPSQNLPEGQQSRSLIAAYLLVLNGYKNVYHLEGGLYKWFKEELPEVS  239 (241)
Q Consensus       171 ~~~~i~~~~~IVvyC~~G~~~~~~~~~~~~~~~rs~~aa~~L~~~Gy~nV~~l~GG~~~W~~~g~p~~~  239 (241)
                      ....++++++||+||.+|.              ||..++..|++.||+++ +|.||+.+|.++|+|+++
T Consensus        49 ~~~~l~~~~~ivv~C~~G~--------------rS~~aa~~L~~~G~~~~-~l~GG~~~W~~~g~pves  102 (103)
T 3iwh_A           49 NLNSFNKNEIYYIVCAGGV--------------RSAKVVEYLEANGIDAV-NVEGGMHAWGDEGLEIKS  102 (103)
T ss_dssp             CGGGCCTTSEEEEECSSSS--------------HHHHHHHHHHTTTCEEE-EETTHHHHHCSSSCBCCC
T ss_pred             hhhhhcCCCeEEEECCCCH--------------HHHHHHHHHHHcCCCEE-EecChHHHHHHCCCccee
Confidence            2345789999999999998              99999999999999755 799999999999999985

>3foj_A Uncharacterized protein; protein SSP1007, structural genomics, PSI-2, protein structure initiative; 1.60A {Staphylococcus saprophyticus subsp}

Probab=99.93  E-value=2.2e-26  Score=173.66  Aligned_cols=98  Identities=26%  Similarity=0.357  Sum_probs=88.6

Q ss_pred             ccccHHHHHHHhc-CCCeEEEEcCChhhhhhCCCCCCeeechhhHHhhhhhHHHHHHhhhhhccccCCCCCChHHHhhhh
Q 026264           93 RSVEAKEALRLQK-ENNFVILDVRPEAEFKEAHPPGAINVQIYRLIKEWTAWDIARRAAFAFFGIFSGTEENPEFLQTGV  171 (241)
Q Consensus        93 ~~Is~~el~~~l~-~~~~~lIDvR~~~Ey~~ghIpGAinip~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  171 (241)
                      +.|+++++.++++ .++++|||||++.||..||||||+|+|+..+..                                .
T Consensus         2 ~~is~~el~~~l~~~~~~~liDvR~~~e~~~ghIpgA~~ip~~~l~~--------------------------------~   49 (100)
T 3foj_A            2 ESITVTELKEKILDANPVNIVDVRTDQETAMGIIPGAETIPMNSIPD--------------------------------N   49 (100)
T ss_dssp             CEECHHHHHHGGGSSSCCEEEECSCHHHHTTCBCTTCEECCGGGGGG--------------------------------C
T ss_pred             CccCHHHHHHHHhcCCCcEEEECCCHHHHhcCcCCCCEECCHHHHHH--------------------------------H
Confidence            5799999999984 558999999999999999999999999987654                                2


Q ss_pred             hcCCCCCCeEEEEcCCCCCCCCCCCCCCchhhHHHHHHHHHHHcCCcceeEccccHHHHHhCCCCc
Q 026264          172 ESQLDKDAKIIVACATGGTMKPSQNLPEGQQSRSLIAAYLLVLNGYKNVYHLEGGLYKWFKEELPE  237 (241)
Q Consensus       172 ~~~i~~~~~IVvyC~~G~~~~~~~~~~~~~~~rs~~aa~~L~~~Gy~nV~~l~GG~~~W~~~g~p~  237 (241)
                      ...++++++||+||++|.              ||..+++.|++.|| +|++|+||+.+|.++|+|+
T Consensus        50 ~~~l~~~~~ivvyC~~g~--------------rs~~a~~~L~~~G~-~v~~l~GG~~~W~~~g~pv  100 (100)
T 3foj_A           50 LNYFNDNETYYIICKAGG--------------RSAQVVQYLEQNGV-NAVNVEGGMDEFGDEGLEH  100 (100)
T ss_dssp             GGGSCTTSEEEEECSSSH--------------HHHHHHHHHHTTTC-EEEEETTHHHHHCSSSCBC
T ss_pred             HHhCCCCCcEEEEcCCCc--------------hHHHHHHHHHHCCC-CEEEecccHHHHHHcCCCC
Confidence            345788999999999997              99999999999999 9999999999999999996

>1gmx_A GLPE protein; transferase, rhodanese, sulfurtransferase, glycerol metabolism; 1.1A {Escherichia coli} SCOP: c.46.1.3 PDB: 1gn0_A

Probab=99.93  E-value=7.6e-26  Score=172.76  Aligned_cols=102  Identities=25%  Similarity=0.432  Sum_probs=91.7

Q ss_pred             cccccHHHHHHHhcCCCeEEEEcCChhhhhhCCCCCCeeechhhHHhhhhhHHHHHHhhhhhccccCCCCCChHHHhhhh
Q 026264           92 VRSVEAKEALRLQKENNFVILDVRPEAEFKEAHPPGAINVQIYRLIKEWTAWDIARRAAFAFFGIFSGTEENPEFLQTGV  171 (241)
Q Consensus        92 ~~~Is~~el~~~l~~~~~~lIDvR~~~Ey~~ghIpGAinip~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  171 (241)
                      +..|+++++.+++++++++|||||++.||..||||||+|||+..+...                           +    
T Consensus         4 ~~~i~~~~l~~~~~~~~~~liDvR~~~e~~~ghIpgA~~ip~~~l~~~---------------------------~----   52 (108)
T 1gmx_A            4 FECINVADAHQKLQEKEAVLVDIRDPQSFAMGHAVQAFHLTNDTLGAF---------------------------M----   52 (108)
T ss_dssp             CEEECHHHHHHHHHTTCCEEEECSCHHHHHHCEETTCEECCHHHHHHH---------------------------H----
T ss_pred             ccccCHHHHHHHHhCCCCEEEEcCCHHHHHhCCCccCEeCCHHHHHHH---------------------------H----
Confidence            567999999999987789999999999999999999999999876431                           1    


Q ss_pred             hcCCCCCCeEEEEcCCCCCCCCCCCCCCchhhHHHHHHHHHHHcCCcceeEccccHHHHHhCCCCcccC
Q 026264          172 ESQLDKDAKIIVACATGGTMKPSQNLPEGQQSRSLIAAYLLVLNGYKNVYHLEGGLYKWFKEELPEVSE  240 (241)
Q Consensus       172 ~~~i~~~~~IVvyC~~G~~~~~~~~~~~~~~~rs~~aa~~L~~~Gy~nV~~l~GG~~~W~~~g~p~~~g  240 (241)
                       ..++++++|||||.+|.              ||..+++.|++.||+||++|+||+.+|.+. +|++++
T Consensus        53 -~~l~~~~~ivvyc~~g~--------------rs~~a~~~L~~~G~~~v~~l~GG~~~W~~~-~p~~~~  105 (108)
T 1gmx_A           53 -RDNDFDTPVMVMCYHGN--------------SSKGAAQYLLQQGYDVVYSIDGGFEAWQRQ-FPAEVA  105 (108)
T ss_dssp             -HHSCTTSCEEEECSSSS--------------HHHHHHHHHHHHTCSSEEEETTHHHHHHHH-CGGGEE
T ss_pred             -HhcCCCCCEEEEcCCCc--------------hHHHHHHHHHHcCCceEEEecCCHHHHHHh-CCcccc
Confidence             22688999999999998              999999999999999999999999999999 999865

>3gk5_A Uncharacterized rhodanese-related protein TVG0868615; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 2.40A {Thermoplasma volcanium GSS1}

Probab=99.92  E-value=1.5e-25  Score=171.72  Aligned_cols=100  Identities=34%  Similarity=0.491  Sum_probs=90.7

Q ss_pred             cccccHHHHHHHhcCCCeEEEEcCChhhhhhCCCCCCeeechhhHHhhhhhHHHHHHhhhhhccccCCCCCChHHHhhhh
Q 026264           92 VRSVEAKEALRLQKENNFVILDVRPEAEFKEAHPPGAINVQIYRLIKEWTAWDIARRAAFAFFGIFSGTEENPEFLQTGV  171 (241)
Q Consensus        92 ~~~Is~~el~~~l~~~~~~lIDvR~~~Ey~~ghIpGAinip~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  171 (241)
                      ++.|+++++.+++++  ++|||||++.||..||||||+|||+..+..                                .
T Consensus         3 ~~~is~~el~~~l~~--~~iiDvR~~~e~~~ghIpgA~~ip~~~l~~--------------------------------~   48 (108)
T 3gk5_A            3 YRSINAADLYENIKA--YTVLDVREPFELIFGSIANSINIPISELRE--------------------------------K   48 (108)
T ss_dssp             CCEECHHHHHHTTTT--CEEEECSCHHHHTTCBCTTCEECCHHHHHH--------------------------------H
T ss_pred             ccEeCHHHHHHHHcC--CEEEECCCHHHHhcCcCCCCEEcCHHHHHH--------------------------------H
Confidence            467999999999876  999999999999999999999999987754                                2


Q ss_pred             hcCCCCCCeEEEEcCCCCCCCCCCCCCCchhhHHHHHHHHHHHcCCcceeEccccHHHHHhCCCCcccC
Q 026264          172 ESQLDKDAKIIVACATGGTMKPSQNLPEGQQSRSLIAAYLLVLNGYKNVYHLEGGLYKWFKEELPEVSE  240 (241)
Q Consensus       172 ~~~i~~~~~IVvyC~~G~~~~~~~~~~~~~~~rs~~aa~~L~~~Gy~nV~~l~GG~~~W~~~g~p~~~g  240 (241)
                      ...++++++||+||++|.              ||..+++.|+++|| +|++|+||+.+|.++|+|++++
T Consensus        49 ~~~l~~~~~ivvyC~~G~--------------rs~~aa~~L~~~G~-~v~~l~GG~~~W~~~~~~~~~~  102 (108)
T 3gk5_A           49 WKILERDKKYAVICAHGN--------------RSAAAVEFLSQLGL-NIVDVEGGIQSWIEEGYPVVLE  102 (108)
T ss_dssp             GGGSCTTSCEEEECSSSH--------------HHHHHHHHHHTTTC-CEEEETTHHHHHHHTTCCCBCC
T ss_pred             HHhCCCCCeEEEEcCCCc--------------HHHHHHHHHHHcCC-CEEEEcCcHHHHHHcCCCCCCC
Confidence            244688999999999987              99999999999999 9999999999999999999875

>1tq1_A AT5G66040, senescence-associated family protein; CESG, structural genomics, protein structure initiative; NMR {Arabidopsis thaliana} SCOP: c.46.1.3

Probab=99.92  E-value=1.6e-25  Score=176.49  Aligned_cols=114  Identities=36%  Similarity=0.531  Sum_probs=95.8

Q ss_pred             ccccccHHHHHHHhcCCCeEEEEcCChhhhhhCCCCCCeeechhhHHhhhhhHHHHHHhhhhhccccCCCCCChHHHhhh
Q 026264           91 RVRSVEAKEALRLQKENNFVILDVRPEAEFKEAHPPGAINVQIYRLIKEWTAWDIARRAAFAFFGIFSGTEENPEFLQTG  170 (241)
Q Consensus        91 ~~~~Is~~el~~~l~~~~~~lIDvR~~~Ey~~ghIpGAinip~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  170 (241)
                      ....|+++++.++++ ++++|||||++.||..||||||+|||+..+..                   .+...+++|++. 
T Consensus        16 ~~~~is~~e~~~~l~-~~~~lIDvR~~~e~~~ghIpgAinip~~~~~~-------------------~~~~~~~~~~~~-   74 (129)
T 1tq1_A           16 VPSSVSVTVAHDLLL-AGHRYLDVRTPEEFSQGHACGAINVPYMNRGA-------------------SGMSKNTDFLEQ-   74 (129)
T ss_dssp             CCEEEEHHHHHHHHH-HTCCEEEESCHHHHHHCCBTTBEECCSCCCST-------------------TTCCCTTTHHHH-
T ss_pred             CCcccCHHHHHHHhc-CCCEEEECCCHHHHhcCCCCCcEECcHhhccc-------------------ccccCCHHHHHH-
Confidence            456899999999887 47899999999999999999999999865422                   111234566665 


Q ss_pred             hhcCCCCCCeEEEEcCCCCCCCCCCCCCCchhhHHHHHHHHHHHcCCcceeEccccHHHHHhCCCCccc
Q 026264          171 VESQLDKDAKIIVACATGGTMKPSQNLPEGQQSRSLIAAYLLVLNGYKNVYHLEGGLYKWFKEELPEVS  239 (241)
Q Consensus       171 ~~~~i~~~~~IVvyC~~G~~~~~~~~~~~~~~~rs~~aa~~L~~~Gy~nV~~l~GG~~~W~~~g~p~~~  239 (241)
                      ....++++++|||||.+|.              ||..++..|+++||+||++|+||+.+|.++|+|+++
T Consensus        75 ~~~~l~~~~~ivvyC~~G~--------------rs~~aa~~L~~~G~~~v~~l~GG~~~W~~~g~p~~~  129 (129)
T 1tq1_A           75 VSSHFGQSDNIIVGCQSGG--------------RSIKATTDLLHAGFTGVKDIVGGYSAWAKNGLPTKA  129 (129)
T ss_dssp             HTTTCCTTSSEEEEESSCS--------------HHHHHHHHHHHHHCCSEEEEECCHHHHHHHTCCCC-
T ss_pred             HHhhCCCCCeEEEECCCCc--------------HHHHHHHHHHHcCCCCeEEeCCcHHHHHhCCCCCCC
Confidence            4456889999999999998              999999999999999999999999999999999874

>2hhg_A Hypothetical protein RPA3614; MCSG, structural genomics, rohopseudom palustris, PSI-2, protein structure initiative; 1.20A {Rhodopseudomonas palustris}

Probab=99.92  E-value=5e-25  Score=174.86  Aligned_cols=113  Identities=27%  Similarity=0.379  Sum_probs=94.1

Q ss_pred             hccccccHHHHHHHhc--CCCeEEEEcCChhhhhh-CCCCCCeeechhhHHhhhhhHHHHHHhhhhhccccCCCCCChHH
Q 026264           90 KRVRSVEAKEALRLQK--ENNFVILDVRPEAEFKE-AHPPGAINVQIYRLIKEWTAWDIARRAAFAFFGIFSGTEENPEF  166 (241)
Q Consensus        90 ~~~~~Is~~el~~~l~--~~~~~lIDvR~~~Ey~~-ghIpGAinip~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  166 (241)
                      ..+..|+++++.++++  .++++|||||++.||.. ||||||+|||+..+......                   ..+. 
T Consensus        19 ~~~~~is~~~l~~~l~~~~~~~~liDvR~~~e~~~~ghIpgA~~ip~~~l~~~~~~-------------------~~~~-   78 (139)
T 2hhg_A           19 SSIETLTTADAIALHKSGASDVVIVDIRDPREIERDGKIPGSFSCTRGMLEFWIDP-------------------QSPY-   78 (139)
T ss_dssp             TTSEEECHHHHHHHHHTTCTTEEEEECSCHHHHHHHCCCTTCEECCGGGHHHHHCT-------------------TSTT-
T ss_pred             HhcCccCHHHHHHHHhccCCCeEEEECCCHHHHHhCCCCCCeEECChHHHHHhcCc-------------------cchh-
Confidence            4568899999999998  56899999999999999 99999999999877542100                   0000 


Q ss_pred             HhhhhhcCCCCCCeEEEEcCCCCCCCCCCCCCCchhhHHHHHHHHHHHcCCcceeEccccHHHHHhCCCCcccC
Q 026264          167 LQTGVESQLDKDAKIIVACATGGTMKPSQNLPEGQQSRSLIAAYLLVLNGYKNVYHLEGGLYKWFKEELPEVSE  240 (241)
Q Consensus       167 ~~~~~~~~i~~~~~IVvyC~~G~~~~~~~~~~~~~~~rs~~aa~~L~~~Gy~nV~~l~GG~~~W~~~g~p~~~g  240 (241)
                          ....++++++|||||++|.              ||..+++.|+++||+||++|+||+.+|.++|+|++++
T Consensus        79 ----~~~~~~~~~~ivvyC~~G~--------------rs~~a~~~L~~~G~~~v~~l~GG~~~W~~~g~p~~~~  134 (139)
T 2hhg_A           79 ----AKPIFQEDKKFVFYCAGGL--------------RSALAAKTAQDMGLKPVAHIEGGFGAWRDAGGPIEAW  134 (139)
T ss_dssp             ----CCGGGGSSSEEEEECSSSH--------------HHHHHHHHHHHHTCCSEEEETTHHHHHHHTTCCCC--
T ss_pred             ----hhccCCCCCeEEEECCCCh--------------HHHHHHHHHHHcCCCCeEEecCCHHHHHHCCCCeecC
Confidence                1234678999999999997              9999999999999999999999999999999999876

>1qxn_A SUD, sulfide dehydrogenase; polysulfide-sulfur transferase, homodimer; NMR {Wolinella succinogenes} SCOP: c.46.1.3

Probab=99.92  E-value=7.2e-25  Score=174.88  Aligned_cols=107  Identities=27%  Similarity=0.480  Sum_probs=95.5

Q ss_pred             hccccccHHHHHHHhc-CCCeEEEEcCChhhhhh-CC--CCCCeeechhhHHhhhhhHHHHHHhhhhhccccCCCCCChH
Q 026264           90 KRVRSVEAKEALRLQK-ENNFVILDVRPEAEFKE-AH--PPGAINVQIYRLIKEWTAWDIARRAAFAFFGIFSGTEENPE  165 (241)
Q Consensus        90 ~~~~~Is~~el~~~l~-~~~~~lIDvR~~~Ey~~-gh--IpGAinip~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  165 (241)
                      ..+..|+++++.++++ .++++|||||++.||.. ||  ||||+|||+..+....                         
T Consensus        20 ~~~~~is~~el~~~l~~~~~~~liDVR~~~E~~~~gh~~IpgAinip~~~l~~~~-------------------------   74 (137)
T 1qxn_A           20 ADMVMLSPKDAYKLLQENPDITLIDVRDPDELKAMGKPDVKNYKHMSRGKLEPLL-------------------------   74 (137)
T ss_dssp             HSSEEECHHHHHHHHHHCTTSEEEECCCHHHHHHTCEECCSSEEECCTTTSHHHH-------------------------
T ss_pred             ccCcccCHHHHHHHHhcCCCeEEEECCCHHHHHhcCCcCCCCCEEcchHHhhhHH-------------------------
Confidence            5678899999999998 66899999999999999 99  9999999998765310                         


Q ss_pred             HHhhhhhcCCCCCCeEEEEcCCCCCCCCCCCCCCchhhHHHHHHHHHHHcCCcceeEccccHHHHHhCCCCcccC
Q 026264          166 FLQTGVESQLDKDAKIIVACATGGTMKPSQNLPEGQQSRSLIAAYLLVLNGYKNVYHLEGGLYKWFKEELPEVSE  240 (241)
Q Consensus       166 ~~~~~~~~~i~~~~~IVvyC~~G~~~~~~~~~~~~~~~rs~~aa~~L~~~Gy~nV~~l~GG~~~W~~~g~p~~~g  240 (241)
                           ....++++++|||||++|.              ||..+++.|++.||+||++|+||+.+|.++|+|++++
T Consensus        75 -----~~~~l~~~~~ivvyC~~G~--------------rS~~aa~~L~~~G~~~v~~l~GG~~~W~~~g~p~~~~  130 (137)
T 1qxn_A           75 -----AKSGLDPEKPVVVFCKTAA--------------RAALAGKTLREYGFKTIYNSEGGMDKWLEEGLPSLDR  130 (137)
T ss_dssp             -----HHHCCCTTSCEEEECCSSS--------------CHHHHHHHHHHHTCSCEEEESSCHHHHHHTTCCEECC
T ss_pred             -----hhccCCCCCeEEEEcCCCc--------------HHHHHHHHHHHcCCcceEEEcCcHHHHHHCCCCcccc
Confidence                 1235789999999999998              9999999999999999999999999999999999875

>3d1p_A Putative thiosulfate sulfurtransferase YOR285W; atomic structure, atomic resolution structure, PSI, MCSG; HET: MSE; 0.98A {Saccharomyces cerevisiae}

Probab=99.92  E-value=5.4e-25  Score=175.01  Aligned_cols=117  Identities=23%  Similarity=0.345  Sum_probs=96.6

Q ss_pred             hccccccHHHHHHHhcC--CCeEEEEcCChhhhhhCCCCCCeeechhhHHhhhhhHHHHHHhhhhhccccCCCCCChHHH
Q 026264           90 KRVRSVEAKEALRLQKE--NNFVILDVRPEAEFKEAHPPGAINVQIYRLIKEWTAWDIARRAAFAFFGIFSGTEENPEFL  167 (241)
Q Consensus        90 ~~~~~Is~~el~~~l~~--~~~~lIDvR~~~Ey~~ghIpGAinip~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  167 (241)
                      ..+..|+++++.+++++  ++++|||||++.||..||||||+|||+..+.....                   ....+|.
T Consensus        20 ~~~~~is~~el~~~l~~~~~~~~liDvR~~~e~~~ghIpgAinip~~~l~~~~~-------------------~~~~~~~   80 (139)
T 3d1p_A           20 SNIQSYSFEDMKRIVGKHDPNVVLVDVREPSEYSIVHIPASINVPYRSHPDAFA-------------------LDPLEFE   80 (139)
T ss_dssp             CCCEECCHHHHHHHHHHTCTTEEEEECSCHHHHHHCCCTTCEECCTTTCTTGGG-------------------SCHHHHH
T ss_pred             CCcceecHHHHHHHHhCCCCCeEEEECcCHHHHhCCCCCCcEEcCHHHhhhhcc-------------------CCHHHHH
Confidence            45678999999999873  58999999999999999999999999987643210                   0112333


Q ss_pred             hhhhhcCCCCCCeEEEEcCCCCCCCCCCCCCCchhhHHHHHHHHHHHcCCcceeEccccHHHHHhCCCCccc
Q 026264          168 QTGVESQLDKDAKIIVACATGGTMKPSQNLPEGQQSRSLIAAYLLVLNGYKNVYHLEGGLYKWFKEELPEVS  239 (241)
Q Consensus       168 ~~~~~~~i~~~~~IVvyC~~G~~~~~~~~~~~~~~~rs~~aa~~L~~~Gy~nV~~l~GG~~~W~~~g~p~~~  239 (241)
                      +.+....++++++|||||.+|.              ||..++..|+++||+||++|+||+.+|.+.|+|+.+
T Consensus        81 ~~~~~~~~~~~~~ivvyC~~G~--------------rs~~aa~~L~~~G~~~v~~l~GG~~~W~~~g~p~~~  138 (139)
T 3d1p_A           81 KQIGIPKPDSAKELIFYCASGK--------------RGGEAQKVASSHGYSNTSLYPGSMNDWVSHGGDKLD  138 (139)
T ss_dssp             HHHSSCCCCTTSEEEEECSSSH--------------HHHHHHHHHHTTTCCSEEECTTHHHHHHHTTGGGCC
T ss_pred             HHHhccCCCCCCeEEEECCCCc--------------hHHHHHHHHHHcCCCCeEEeCCcHHHHHHcCCCCCC
Confidence            3322246789999999999987              999999999999999999999999999999999864

>3ilm_A ALR3790 protein; rhodanese-like, NSR437H, NESG, structural genomics, protein structure initiative, northeast structural genomics consortium; 2.26A {Nostoc SP} PDB: 2kl3_A

Probab=99.91  E-value=8.1e-25  Score=175.61  Aligned_cols=101  Identities=29%  Similarity=0.378  Sum_probs=90.4

Q ss_pred             ccHHHHHHHhcCC--CeEEEEcCChhhhhhCCCCCCeeechhhHHhhhhhHHHHHHhhhhhccccCCCCCChHHHhhhhh
Q 026264           95 VEAKEALRLQKEN--NFVILDVRPEAEFKEAHPPGAINVQIYRLIKEWTAWDIARRAAFAFFGIFSGTEENPEFLQTGVE  172 (241)
Q Consensus        95 Is~~el~~~l~~~--~~~lIDvR~~~Ey~~ghIpGAinip~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  172 (241)
                      |+++++.++++.+  +++|||||++.||..||||||+|||+..+...                               ..
T Consensus         2 Is~~el~~~l~~~~~~~~liDvR~~~e~~~ghIpgAi~ip~~~l~~~-------------------------------~~   50 (141)
T 3ilm_A            2 SDAHVLKSRLEWGEPAFTILDVRDRSTYNDGHIMGAMAMPIEDLVDR-------------------------------AS   50 (141)
T ss_dssp             CCHHHHHHHHHHSCSCEEEEECSCHHHHHHCEETTCEECCGGGHHHH-------------------------------HH
T ss_pred             CCHHHHHHHHhcCCCCEEEEECCCHHHHhCCCCCCCEEcCHHHHHHH-------------------------------HH
Confidence            7899999998743  59999999999999999999999999876542                               22


Q ss_pred             cCCCCCCeEEEEcCCCCCCCCCCCCCCchhhHHHHHHHHHHHcCCcceeEccccHHHHHhCCCCcccC
Q 026264          173 SQLDKDAKIIVACATGGTMKPSQNLPEGQQSRSLIAAYLLVLNGYKNVYHLEGGLYKWFKEELPEVSE  240 (241)
Q Consensus       173 ~~i~~~~~IVvyC~~G~~~~~~~~~~~~~~~rs~~aa~~L~~~Gy~nV~~l~GG~~~W~~~g~p~~~g  240 (241)
                      ..++++++|||||.+|.              ||..+++.|+.+||+||++|+||+.+|.++|+|++++
T Consensus        51 ~~l~~~~~ivvyC~~g~--------------rs~~aa~~L~~~G~~~v~~l~GG~~~W~~~g~p~~~~  104 (141)
T 3ilm_A           51 SSLEKSRDIYVYGAGDE--------------QTSQAVNLLRSAGFEHVSELKGGLAAWKAIGGPTEGI  104 (141)
T ss_dssp             TTSCTTSEEEEECSSHH--------------HHHHHHHHHHHTTCCSEEECTTHHHHHHHTTCCEEEE
T ss_pred             hcCCCCCeEEEEECCCh--------------HHHHHHHHHHHcCCCCEEEecCHHHHHHHCCCCcccC
Confidence            45789999999999987              9999999999999999999999999999999999875

>3nhv_A BH2092 protein; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium, NESG; 2.50A {Bacillus halodurans} PDB: 3o3w_A

Probab=99.91  E-value=3e-24  Score=172.77  Aligned_cols=105  Identities=24%  Similarity=0.321  Sum_probs=92.2

Q ss_pred             ccccHHHHHHHhcCC--CeEEEEcCChhhhhhCCCCCCeeechhhHHhhhhhHHHHHHhhhhhccccCCCCCChHHHhhh
Q 026264           93 RSVEAKEALRLQKEN--NFVILDVRPEAEFKEAHPPGAINVQIYRLIKEWTAWDIARRAAFAFFGIFSGTEENPEFLQTG  170 (241)
Q Consensus        93 ~~Is~~el~~~l~~~--~~~lIDvR~~~Ey~~ghIpGAinip~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  170 (241)
                      ..|+++++.++++++  +++|||||++.||..||||||+|||+..+...                               
T Consensus        16 ~~is~~el~~~l~~~~~~~~liDvR~~~ey~~ghIpgAinip~~~l~~~-------------------------------   64 (144)
T 3nhv_A           16 YETDIADLSIDIKKGYEGIIVVDVRDAEAYKECHIPTAISIPGNKINED-------------------------------   64 (144)
T ss_dssp             TEEEHHHHHHHHHTTCCSEEEEECSCHHHHHHCBCTTCEECCGGGCSTT-------------------------------
T ss_pred             cccCHHHHHHHHHcCCCCEEEEECcCHHHHhcCCCCCCEECCHHHHhHH-------------------------------
Confidence            469999999999865  79999999999999999999999999876431                               


Q ss_pred             hhcCCCCCCeEEEEcCCCCCCCCCCCCCCchhhHHHHHHHHHHHcCCcceeEccccHHHHHhCCCCcccCC
Q 026264          171 VESQLDKDAKIIVACATGGTMKPSQNLPEGQQSRSLIAAYLLVLNGYKNVYHLEGGLYKWFKEELPEVSEE  241 (241)
Q Consensus       171 ~~~~i~~~~~IVvyC~~G~~~~~~~~~~~~~~~rs~~aa~~L~~~Gy~nV~~l~GG~~~W~~~g~p~~~g~  241 (241)
                      ....++++++|||||.+|.|            .||..+++.|+.+|| +|++|+||+.+|.++|+|+++++
T Consensus        65 ~~~~l~~~~~ivvyC~~g~~------------~rs~~aa~~L~~~G~-~v~~l~GG~~~W~~~g~pv~~~~  122 (144)
T 3nhv_A           65 TTKRLSKEKVIITYCWGPAC------------NGATKAAAKFAQLGF-RVKELIGGIEYWRKENGEVEGTL  122 (144)
T ss_dssp             TTTTCCTTSEEEEECSCTTC------------CHHHHHHHHHHHTTC-EEEEEESHHHHHHHTTCCCBSSS
T ss_pred             HHhhCCCCCeEEEEECCCCc------------cHHHHHHHHHHHCCC-eEEEeCCcHHHHHHCCCCccCCC
Confidence            23467899999999999942            299999999999999 69999999999999999998763

>3hix_A ALR3790 protein; rhodanese, rhodanese_3, Q8YQN0, Q8YQN0_anAsp, NSR437I, NESG, structural genomics, PSI-2, protein structure initiative; 1.92A {Anabaena SP} PDB: 3k9r_A

Probab=99.91  E-value=5.4e-25  Score=167.94  Aligned_cols=97  Identities=30%  Similarity=0.386  Sum_probs=79.2

Q ss_pred             HHHHHhcC--CCeEEEEcCChhhhhhCCCCCCeeechhhHHhhhhhHHHHHHhhhhhccccCCCCCChHHHhhhhhcCCC
Q 026264           99 EALRLQKE--NNFVILDVRPEAEFKEAHPPGAINVQIYRLIKEWTAWDIARRAAFAFFGIFSGTEENPEFLQTGVESQLD  176 (241)
Q Consensus        99 el~~~l~~--~~~~lIDvR~~~Ey~~ghIpGAinip~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~  176 (241)
                      |+.++++.  ++++|||||++.||..||||||+|||+..+...                               ....++
T Consensus         2 el~~~l~~~~~~~~liDvR~~~e~~~ghIpgAi~ip~~~l~~~-------------------------------~~~~l~   50 (106)
T 3hix_A            2 VLKSRLEWGEPAFTILDVRDRSTYNDGHIMGAMAMPIEDLVDR-------------------------------ASSSLE   50 (106)
T ss_dssp             -----------CCEEEECSCHHHHHTCEETTCEECCGGGHHHH-------------------------------HHHHSC
T ss_pred             hHHHHHHcCCCCeEEEECCCHHHHhcCcCCCCEeCCHHHHHHH-------------------------------HHhcCC
Confidence            56666663  369999999999999999999999999876542                               113478


Q ss_pred             CCCeEEEEcCCCCCCCCCCCCCCchhhHHHHHHHHHHHcCCcceeEccccHHHHHhCCCCcccC
Q 026264          177 KDAKIIVACATGGTMKPSQNLPEGQQSRSLIAAYLLVLNGYKNVYHLEGGLYKWFKEELPEVSE  240 (241)
Q Consensus       177 ~~~~IVvyC~~G~~~~~~~~~~~~~~~rs~~aa~~L~~~Gy~nV~~l~GG~~~W~~~g~p~~~g  240 (241)
                      ++++|||||.+|.              ||..+++.|+.+||+||++|+||+.+|.++|+|+++.
T Consensus        51 ~~~~ivvyc~~g~--------------rs~~a~~~L~~~G~~~v~~l~GG~~~W~~~g~~~~~~  100 (106)
T 3hix_A           51 KSRDIYVYGAGDE--------------QTSQAVNLLRSAGFEHVSELKGGLAAWKAIGGPTELE  100 (106)
T ss_dssp             TTSCEEEECSSHH--------------HHHHHHHHHHHTTCSCEEECTTHHHHHHHTTCCEEEC
T ss_pred             CCCeEEEEECCCC--------------hHHHHHHHHHHcCCcCEEEecCCHHHHHHCCCCCCCC
Confidence            8899999999987              9999999999999999999999999999999998764

>3flh_A Uncharacterized protein LP_1913; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 2.00A {Lactobacillus plantarum} PDB: 3fnj_A 3i3u_A

Probab=99.90  E-value=6.1e-24  Score=166.37  Aligned_cols=102  Identities=26%  Similarity=0.373  Sum_probs=90.0

Q ss_pred             cccccHHHHHHHhcCC--CeEEEEcCChhhh-hhCCCCCCeeechhhHHhhhhhHHHHHHhhhhhccccCCCCCChHHHh
Q 026264           92 VRSVEAKEALRLQKEN--NFVILDVRPEAEF-KEAHPPGAINVQIYRLIKEWTAWDIARRAAFAFFGIFSGTEENPEFLQ  168 (241)
Q Consensus        92 ~~~Is~~el~~~l~~~--~~~lIDvR~~~Ey-~~ghIpGAinip~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  168 (241)
                      ...|+++++.++++++  +++|||||++.|| ..||||||+|||+..+..                              
T Consensus        14 ~~~is~~el~~~l~~~~~~~~liDvR~~~e~~~~ghIpgA~nip~~~l~~------------------------------   63 (124)
T 3flh_A           14 SLYIDHHTVLADMQNATGKYVVLDVRNAPAQVKKDQIKGAIAMPAKDLAT------------------------------   63 (124)
T ss_dssp             TTEECHHHHHHHHHHTCCCEEEEECCCSCHHHHCCEETTCEECCHHHHHH------------------------------
T ss_pred             cceecHHHHHHHHHcCCCCEEEEECCCHHHHHhcCcCCCCEECCHHHHHH------------------------------
Confidence            4579999999998764  4999999999998 999999999999987654                              


Q ss_pred             hhhhcCCCCCCeEEEEcCCCCCCCCCCCCCCchhhH--HHHHHHHHHHcCCcceeEccccHHHHHhCCCCcccC
Q 026264          169 TGVESQLDKDAKIIVACATGGTMKPSQNLPEGQQSR--SLIAAYLLVLNGYKNVYHLEGGLYKWFKEELPEVSE  240 (241)
Q Consensus       169 ~~~~~~i~~~~~IVvyC~~G~~~~~~~~~~~~~~~r--s~~aa~~L~~~Gy~nV~~l~GG~~~W~~~g~p~~~g  240 (241)
                        ....++++++|||||.+|.              |  |..+++.|++.||+ |++|+||+.+|.+.|+|+.++
T Consensus        64 --~~~~l~~~~~ivvyC~~g~--------------r~~s~~a~~~L~~~G~~-v~~l~GG~~~W~~~~~p~~~~  120 (124)
T 3flh_A           64 --RIGELDPAKTYVVYDWTGG--------------TTLGKTALLVLLSAGFE-AYELAGALEGWKGMQLPLEHH  120 (124)
T ss_dssp             --HGGGSCTTSEEEEECSSSS--------------CSHHHHHHHHHHHHTCE-EEEETTHHHHHHHTTCCEEC-
T ss_pred             --HHhcCCCCCeEEEEeCCCC--------------chHHHHHHHHHHHcCCe-EEEeCCcHHHHHHcCCCCCcc
Confidence              2245788999999999998              6  89999999999997 999999999999999998764

>1wv9_A Rhodanese homolog TT1651; CDC25, phosphatase, sulfurtransferase, structural genomics, NPPSFA; 2.00A {Thermus thermophilus}

Probab=99.90  E-value=3.8e-24  Score=159.59  Aligned_cols=93  Identities=30%  Similarity=0.433  Sum_probs=78.0

Q ss_pred             ccccHHHHHHHhcCCCeEEEEcCChhhhhhCCCCCCeeechhhHHhhhhhHHHHHHhhhhhccccCCCCCChHHHhhhhh
Q 026264           93 RSVEAKEALRLQKENNFVILDVRPEAEFKEAHPPGAINVQIYRLIKEWTAWDIARRAAFAFFGIFSGTEENPEFLQTGVE  172 (241)
Q Consensus        93 ~~Is~~el~~~l~~~~~~lIDvR~~~Ey~~ghIpGAinip~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  172 (241)
                      +.|+++++.+++++ +++|||||++.||..||||||+|+|+..+..                                ..
T Consensus         2 ~~is~~~l~~~~~~-~~~liDvR~~~e~~~ghi~gAi~ip~~~l~~--------------------------------~~   48 (94)
T 1wv9_A            2 RKVRPEELPALLEE-GVLVVDVRPADRRSTPLPFAAEWVPLEKIQK--------------------------------GE   48 (94)
T ss_dssp             CEECGGGHHHHHHT-TCEEEECCCC--CCSCCSSCCEECCHHHHTT--------------------------------TC
T ss_pred             CcCCHHHHHHHHHC-CCEEEECCCHHHHhcccCCCCEECCHHHHHH--------------------------------HH
Confidence            46889999998876 7999999999999999999999999987654                                22


Q ss_pred             cCCCCCCeEEEEcCCCCCCCCCCCCCCchhhHHHHHHHHHHHcCCcceeEccccHHHHHhCC
Q 026264          173 SQLDKDAKIIVACATGGTMKPSQNLPEGQQSRSLIAAYLLVLNGYKNVYHLEGGLYKWFKEE  234 (241)
Q Consensus       173 ~~i~~~~~IVvyC~~G~~~~~~~~~~~~~~~rs~~aa~~L~~~Gy~nV~~l~GG~~~W~~~g  234 (241)
                      ..+++ ++||+||++|.              ||..++..|++.||+ |++|+||+.+|.++|
T Consensus        49 ~~l~~-~~ivvyC~~g~--------------rs~~a~~~L~~~G~~-v~~l~GG~~~W~~~G   94 (94)
T 1wv9_A           49 HGLPR-RPLLLVCEKGL--------------LSQVAALYLEAEGYE-AMSLEGGLQALTQGK   94 (94)
T ss_dssp             CCCCS-SCEEEECSSSH--------------HHHHHHHHHHHHTCC-EEEETTGGGCC----
T ss_pred             HhCCC-CCEEEEcCCCC--------------hHHHHHHHHHHcCCc-EEEEcccHHHHHhCc
Confidence            44677 99999999997              999999999999998 999999999998875

>2k0z_A Uncharacterized protein HP1203; A/B domain, structural genomics, unknown function, PSI-2, PR structure initiative; NMR {Helicobacter pylori}

Probab=99.89  E-value=3.1e-24  Score=164.73  Aligned_cols=99  Identities=30%  Similarity=0.427  Sum_probs=85.0

Q ss_pred             ccccHHHHHHHhcCCCeEEEEcCChhhhhhCCCCCCeeechhhHHhhhhhHHHHHHhhhhhccccCCCCCChHHHhhhhh
Q 026264           93 RSVEAKEALRLQKENNFVILDVRPEAEFKEAHPPGAINVQIYRLIKEWTAWDIARRAAFAFFGIFSGTEENPEFLQTGVE  172 (241)
Q Consensus        93 ~~Is~~el~~~l~~~~~~lIDvR~~~Ey~~ghIpGAinip~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  172 (241)
                      ..|+++++    ..++++|||||++.||..||||||+|+|+..+....                              ..
T Consensus         5 ~~is~~el----~~~~~~liDvR~~~e~~~ghIpgAi~ip~~~l~~~~------------------------------~~   50 (110)
T 2k0z_A            5 YAISLEEV----NFNDFIVVDVRELDEYEELHLPNATLISVNDQEKLA------------------------------DF   50 (110)
T ss_dssp             TEEETTTC----CGGGSEEEEEECHHHHHHSBCTTEEEEETTCHHHHH------------------------------HH
T ss_pred             eeeCHHHh----ccCCeEEEECCCHHHHhcCcCCCCEEcCHHHHHHHH------------------------------Hh
Confidence            35667665    345799999999999999999999999998775421                              11


Q ss_pred             cCCCCCCeEEEEcCCCCCCCCCCCCCCchhhHHHHHHHHHHHcCCcceeEccccHHHHHhCCCCcccC
Q 026264          173 SQLDKDAKIIVACATGGTMKPSQNLPEGQQSRSLIAAYLLVLNGYKNVYHLEGGLYKWFKEELPEVSE  240 (241)
Q Consensus       173 ~~i~~~~~IVvyC~~G~~~~~~~~~~~~~~~rs~~aa~~L~~~Gy~nV~~l~GG~~~W~~~g~p~~~g  240 (241)
                      ..++++++|||||++|.              ||..+++.|+.+||++ ++|+||+.+|.++|+|++++
T Consensus        51 ~~~~~~~~ivvyC~~G~--------------rs~~aa~~L~~~G~~~-~~l~GG~~~W~~~g~p~~~~  103 (110)
T 2k0z_A           51 LSQHKDKKVLLHCRAGR--------------RALDAAKSMHELGYTP-YYLEGNVYDFEKYGFRMVYD  103 (110)
T ss_dssp             HHSCSSSCEEEECSSSH--------------HHHHHHHHHHHTTCCC-EEEESCGGGTTTTTCCCBCC
T ss_pred             cccCCCCEEEEEeCCCc--------------hHHHHHHHHHHCCCCE-EEecCCHHHHHHCCCcEecC
Confidence            24788999999999997              9999999999999999 99999999999999999876

>1t3k_A Arath CDC25, dual-specificity tyrosine phosphatase; cell cycle, phosphorylation, plant, hydrolase; NMR {Arabidopsis thaliana} SCOP: c.46.1.1

Probab=99.87  E-value=4.3e-23  Score=167.41  Aligned_cols=108  Identities=21%  Similarity=0.306  Sum_probs=89.9

Q ss_pred             ccccccHHHHHHHhcCCCeEEEEcCChhhhhhCCCCCCeeechhhHHhhhhhHHHHHHhhhhhccccCCCCCChHHHhhh
Q 026264           91 RVRSVEAKEALRLQKENNFVILDVRPEAEFKEAHPPGAINVQIYRLIKEWTAWDIARRAAFAFFGIFSGTEENPEFLQTG  170 (241)
Q Consensus        91 ~~~~Is~~el~~~l~~~~~~lIDvR~~~Ey~~ghIpGAinip~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  170 (241)
                      .+..|+++++.+++++++++|||||++.||..||||||+|||+..+...                       ..++    
T Consensus        26 ~~~~Is~~el~~~l~~~~~~lIDvR~~~ey~~ghIpgAinip~~~l~~~-----------------------~~~l----   78 (152)
T 1t3k_A           26 SISYITSTQLLPLHRRPNIAIIDVRDEERNYDGHIAGSLHYASGSFDDK-----------------------ISHL----   78 (152)
T ss_dssp             SSEEECTTTTTTCCCCTTEEEEEESCSHHHHSSCCCSSEEECCSSSSTT-----------------------HHHH----
T ss_pred             CCceECHHHHHHHhcCCCEEEEECCChhhccCccCCCCEECCHHHHHHH-----------------------HHHH----
Confidence            3467999999888877789999999999999999999999999875431                       1122    


Q ss_pred             hhcCCCCCCeEEEEcC-CCCCCCCCCCCCCchhhHHHHHHHHHHH--------cCCcceeEccccHHHHHhCCCCcccC
Q 026264          171 VESQLDKDAKIIVACA-TGGTMKPSQNLPEGQQSRSLIAAYLLVL--------NGYKNVYHLEGGLYKWFKEELPEVSE  240 (241)
Q Consensus       171 ~~~~i~~~~~IVvyC~-~G~~~~~~~~~~~~~~~rs~~aa~~L~~--------~Gy~nV~~l~GG~~~W~~~g~p~~~g  240 (241)
                       ...++++++|||||+ +|.              |+..++..|.+        .||+||++|+||+.+|.++|+|++++
T Consensus        79 -~~~~~~~~~iVvyC~~~G~--------------rs~~aa~~L~~~l~~~L~~~G~~~V~~L~GG~~~W~~~g~p~~~~  142 (152)
T 1t3k_A           79 -VQNVKDKDTLVFHSALSQV--------------RGPTCARRLVNYLDEKKEDTGIKNIMILERGFNGWEASGKPVCRC  142 (152)
T ss_dssp             -HHTCCSCCEEEESSSCCSS--------------SHHHHHHHHHHHHHHSSSCCCSSEEEEESSTTHHHHHHSCSSCCC
T ss_pred             -HHhcCCCCEEEEEcCCCCc--------------chHHHHHHHHHHHHHHHHhcCCCcEEEEcCCHHHHHHcCCccccC
Confidence             233578899999999 876              88888887753        89999999999999999999999875

>2fsx_A RV0390, COG0607: rhodanese-related sulfurtransferase; RV0390 BR SAD DATA with FBAR, structural genomics, PSI; 1.80A {Mycobacterium tuberculosis}

Probab=99.87  E-value=7.9e-23  Score=164.54  Aligned_cols=113  Identities=23%  Similarity=0.327  Sum_probs=87.8

Q ss_pred             cccccHHHHHHHhcC-CCeEEEEcCChhhhhh-CCC------CCCeeechhhHHhhhhhHHHHHHhhhhhccccCCCCCC
Q 026264           92 VRSVEAKEALRLQKE-NNFVILDVRPEAEFKE-AHP------PGAINVQIYRLIKEWTAWDIARRAAFAFFGIFSGTEEN  163 (241)
Q Consensus        92 ~~~Is~~el~~~l~~-~~~~lIDvR~~~Ey~~-ghI------pGAinip~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~  163 (241)
                      +..|+++++.+++++ ++++|||||++.||.. |||      |||+|||+.. .+.                     ..+
T Consensus         4 ~~~is~~el~~~l~~~~~~~liDVR~~~e~~~~ghi~~~g~~pgAv~ip~~~-~~~---------------------~~~   61 (148)
T 2fsx_A            4 AGDITPLQAWEMLSDNPRAVLVDVRCEAEWRFVGVPDLSSLGREVVYVEWAT-SDG---------------------THN   61 (148)
T ss_dssp             SEEECHHHHHHHHHHCTTCEEEECSCHHHHHHTCEECCGGGTCCCEECCSBC-TTS---------------------CBC
T ss_pred             cccCCHHHHHHHHhcCCCeEEEECCCHHHHHhcCCCccccCCCCcEEeeeec-ccc---------------------ccC
Confidence            357999999999874 5899999999999997 999      9999999986 210                     001


Q ss_pred             hHHHhhh----hhcCCCCCCeEEEEcCCCCCCCCCCCCCCchhhHHHHHHHHHHHcCCcceeEccccH------------
Q 026264          164 PEFLQTG----VESQLDKDAKIIVACATGGTMKPSQNLPEGQQSRSLIAAYLLVLNGYKNVYHLEGGL------------  227 (241)
Q Consensus       164 ~~~~~~~----~~~~i~~~~~IVvyC~~G~~~~~~~~~~~~~~~rs~~aa~~L~~~Gy~nV~~l~GG~------------  227 (241)
                      ++|.+++    ...+++++++|||||++|.              ||..+++.|+++||+||++|+||+            
T Consensus        62 ~~~~~~l~~~l~~~~~~~~~~ivvyC~~G~--------------rS~~aa~~L~~~G~~~v~~l~GG~~~w~~~~g~~~~  127 (148)
T 2fsx_A           62 DNFLAELRDRIPADADQHERPVIFLCRSGN--------------RSIGAAEVATEAGITPAYNVLDGFEGHLDAEGHRGA  127 (148)
T ss_dssp             TTHHHHHHHHCC-------CCEEEECSSSS--------------THHHHHHHHHHTTCCSEEEETTTTTCCCCTTSCCCS
T ss_pred             HHHHHHHHHHHhhccCCCCCEEEEEcCCCh--------------hHHHHHHHHHHcCCcceEEEcCChhhhhhhcccccc
Confidence            2232221    1135688999999999998              999999999999999999999999            


Q ss_pred             HHHHhCCCCcccC
Q 026264          228 YKWFKEELPEVSE  240 (241)
Q Consensus       228 ~~W~~~g~p~~~g  240 (241)
                      .+|.++|+|++++
T Consensus       128 ~~W~~~glp~~~~  140 (148)
T 2fsx_A          128 TGWRAVGLPWRQG  140 (148)
T ss_dssp             SSTTTTTCSEECC
T ss_pred             ccHHHcCCCCCcc
Confidence            7899999999865

>3i2v_A Adenylyltransferase and sulfurtransferase MOCS3; rhodanese, UBA4, structural genomics, ubiquitin biology, structural genomics consortium, SGC; 1.25A {Homo sapiens}

Probab=99.87  E-value=4e-22  Score=155.00  Aligned_cols=115  Identities=23%  Similarity=0.226  Sum_probs=86.7

Q ss_pred             cccHHHHHHHhcCC-CeEEEEcCChhhhhhCCCCCCeeechhhHHhhhhhHHHHHHhhhhhccccCCCCCChHHHhh-hh
Q 026264           94 SVEAKEALRLQKEN-NFVILDVRPEAEFKEAHPPGAINVQIYRLIKEWTAWDIARRAAFAFFGIFSGTEENPEFLQT-GV  171 (241)
Q Consensus        94 ~Is~~el~~~l~~~-~~~lIDvR~~~Ey~~ghIpGAinip~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~  171 (241)
                      .|+++++.++++++ +++|||||++.||..||||||+|||+..+......... .               .++.+.. ..
T Consensus         2 ~is~~el~~~l~~~~~~~liDvR~~~e~~~ghIpgA~~ip~~~~~~~~~~~~~-~---------------~~~~l~~~~~   65 (127)
T 3i2v_A            2 RVSVTDYKRLLDSGAFHLLLDVRPQVEVDICRLPHALHIPLKHLERRDAESLK-L---------------LKEAIWEEKQ   65 (127)
T ss_dssp             EECHHHHHHHHHHTCCCEEEECSCHHHHHHCCCTTSEECCHHHHHTTCHHHHH-H---------------HHHHHHHHHT
T ss_pred             CCCHHHHHHHHhCCCCeEEEECCCHHHhhheecCCceeCChHHHhhhhhhhHH-H---------------HHHHHhhhcc
Confidence            58999999998765 59999999999999999999999999887643211000 0               0011111 01


Q ss_pred             hcCCCCCCeEEEEcCCCCCCCCCCCCCCchhhHHHHHHHHHHHc------CCcceeEccccHHHHHhCCCCcc
Q 026264          172 ESQLDKDAKIIVACATGGTMKPSQNLPEGQQSRSLIAAYLLVLN------GYKNVYHLEGGLYKWFKEELPEV  238 (241)
Q Consensus       172 ~~~i~~~~~IVvyC~~G~~~~~~~~~~~~~~~rs~~aa~~L~~~------Gy~nV~~l~GG~~~W~~~g~p~~  238 (241)
                      ..+++++++|||||++|.              ||..+++.|.+.      ||.+|++|+||+.+|.+++.|..
T Consensus        66 ~~~~~~~~~ivv~C~~G~--------------rs~~a~~~L~~~gg~~~~G~~~v~~l~GG~~~W~~~~~~~~  124 (127)
T 3i2v_A           66 GTQEGAAVPIYVICKLGN--------------DSQKAVKILQSLSAAQELDPLTVRDVVGGLMAWAAKIDGTF  124 (127)
T ss_dssp             TC---CCEEEEEECSSSS--------------HHHHHHHHHHHHHHTTSSSCEEEEEETTHHHHHHHHTCTTS
T ss_pred             cccCCCCCeEEEEcCCCC--------------cHHHHHHHHHHhhccccCCCceEEEecCCHHHHHHhcCCCC
Confidence            134567779999999998              999999999999      68899999999999998877643

>1vee_A Proline-rich protein family; hypothetical protein, structural genomics, rhodanese domain, riken structural genomics/proteomics initiative; NMR {Arabidopsis thaliana} PDB: 2dcq_A

Probab=99.86  E-value=3.4e-22  Score=158.41  Aligned_cols=109  Identities=27%  Similarity=0.439  Sum_probs=89.3

Q ss_pred             cccccHHHHHHHhc-CCCeEEEEcCChhhhhh-CCC------CCCeeechhhHHhhhhhHHHHHHhhhhhccccCCCCCC
Q 026264           92 VRSVEAKEALRLQK-ENNFVILDVRPEAEFKE-AHP------PGAINVQIYRLIKEWTAWDIARRAAFAFFGIFSGTEEN  163 (241)
Q Consensus        92 ~~~Is~~el~~~l~-~~~~~lIDvR~~~Ey~~-ghI------pGAinip~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~  163 (241)
                      ...|+++++.++++ .++++|||||++.||.. +|+      |||+|||+..+..                         
T Consensus         4 ~~~is~~e~~~~l~~~~~~~liDVR~~~E~~~~~~~~~~g~~~ga~~ip~~~~~~-------------------------   58 (134)
T 1vee_A            4 GSSGSAKNAYTKLGTDDNAQLLDIRATADFRQVGSPNIKGLGKKAVSTVYNGEDK-------------------------   58 (134)
T ss_dssp             SCBCCHHHHHHHHHHCTTEEEEECSCHHHHHHTCEECCTTTSCCCEECCCCGGGH-------------------------
T ss_pred             CCccCHHHHHHHHHhCCCeEEEEcCCHHHHhhcCCCcccccCCceEEeecccccC-------------------------
Confidence            35799999999987 45899999999999986 333      7999999876421                         


Q ss_pred             hHHHhhhhhcC--CCCCCeEEEEcCCCCCCCCCCCCCCchhhHHHHHHHHHHHcCCcceeEccccH---HHHHhCCCCcc
Q 026264          164 PEFLQTGVESQ--LDKDAKIIVACATGGTMKPSQNLPEGQQSRSLIAAYLLVLNGYKNVYHLEGGL---YKWFKEELPEV  238 (241)
Q Consensus       164 ~~~~~~~~~~~--i~~~~~IVvyC~~G~~~~~~~~~~~~~~~rs~~aa~~L~~~Gy~nV~~l~GG~---~~W~~~g~p~~  238 (241)
                      ++|+++ ....  ++++++|||||++|.              ||..++..|+++||+||++|.||+   .+|.++|+|++
T Consensus        59 ~~~~~~-l~~~~~~~~~~~ivv~C~sG~--------------RS~~aa~~L~~~G~~~v~~l~GG~~~~~~W~~~g~p~~  123 (134)
T 1vee_A           59 PGFLKK-LSLKFKDPENTTLYILDKFDG--------------NSELVAELVALNGFKSAYAIKDGAEGPRGWLNSSLPWI  123 (134)
T ss_dssp             HHHHHH-HHTTCSCGGGCEEEEECSSST--------------THHHHHHHHHHHTCSEEEECTTTTTSTTSSGGGTCCEE
T ss_pred             hhHHHH-HHHHhCCCCCCEEEEEeCCCC--------------cHHHHHHHHHHcCCcceEEecCCccCCcchhhcCCCCC
Confidence            223333 2222  378899999999998              999999999999999999999999   78999999998


Q ss_pred             cC
Q 026264          239 SE  240 (241)
Q Consensus       239 ~g  240 (241)
                      ++
T Consensus       124 ~~  125 (134)
T 1vee_A          124 EP  125 (134)
T ss_dssp             CC
T ss_pred             CC
Confidence            65

>1urh_A 3-mercaptopyruvate sulfurtransferase; rhodanese; 2.8A {Escherichia coli} SCOP: c.46.1.2 c.46.1.2

Probab=99.86  E-value=1e-21  Score=172.69  Aligned_cols=121  Identities=22%  Similarity=0.228  Sum_probs=96.9

Q ss_pred             ccccHHHHHHHhcCCCeEEEEcC----------ChhhhhhCCCCCCeeechhhHHhhhhhHHHHHHhhhhhccccCCCCC
Q 026264           93 RSVEAKEALRLQKENNFVILDVR----------PEAEFKEAHPPGAINVQIYRLIKEWTAWDIARRAAFAFFGIFSGTEE  162 (241)
Q Consensus        93 ~~Is~~el~~~l~~~~~~lIDvR----------~~~Ey~~ghIpGAinip~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~  162 (241)
                      ..|+++++.+++++++++|||||          ++.||..||||||+|+|+..+.+....          +.+.   .+.
T Consensus         4 ~~is~~~l~~~l~~~~~~iiDvR~~~~~~~~~~~~~e~~~ghIpgAi~ip~~~l~~~~~~----------~~~~---~~~   70 (280)
T 1urh_A            4 WFVGADWLAEHIDDPEIQIIDARMASPGQEDRNVAQEYLNGHIPGAVFFDIEALSDHTSP----------LPHM---LPR   70 (280)
T ss_dssp             CEECHHHHHTTTTCTTEEEEECCCCCSSCTTCCHHHHHHHSBCTTCEECCGGGGSCSSSS----------SSSC---CCC
T ss_pred             ceeeHHHHHHhcCCCCeEEEEeeccCCcccccchhhhhhhCcCCCCEECCHHHhcCCCCC----------CCCC---CCC
Confidence            36999999999987789999999          788999999999999999876432100          0011   112


Q ss_pred             ChHHHhhhhhcCCCCCCeEEEEcCCCCCCCCCCCCCCchhhH-HHHHHHHHHHcCCcceeEccccHHHHHhCCCCcccC
Q 026264          163 NPEFLQTGVESQLDKDAKIIVACATGGTMKPSQNLPEGQQSR-SLIAAYLLVLNGYKNVYHLEGGLYKWFKEELPEVSE  240 (241)
Q Consensus       163 ~~~~~~~~~~~~i~~~~~IVvyC~~G~~~~~~~~~~~~~~~r-s~~aa~~L~~~Gy~nV~~l~GG~~~W~~~g~p~~~g  240 (241)
                      ..+|.+.+...+++++++|||||++|.              + |.++++.|+.+||+||++|+||+.+|.++|+|++++
T Consensus        71 ~~~~~~~~~~~gi~~~~~ivvyc~~g~--------------~~a~~a~~~L~~~G~~~v~~l~GG~~~W~~~g~p~~~~  135 (280)
T 1urh_A           71 PETFAVAMRELGVNQDKHLIVYDEGNL--------------FSAPRAWWMLRTFGVEKVSILGGGLAGWQRDDLLLEEG  135 (280)
T ss_dssp             HHHHHHHHHHTTCCTTSEEEEECSSSC--------------SSHHHHHHHHHHTTCSCEEEETTHHHHHHHTTCCCBBS
T ss_pred             HHHHHHHHHHcCCCCCCeEEEECCCCC--------------ccHHHHHHHHHHcCCCCEEEecCCHHHHHHCCCcccCC
Confidence            234444433356899999999999987              6 999999999999999999999999999999999876

>1e0c_A Rhodanese, sulfurtransferase; sulfur metabolism, thiosulfate:cyanide sulfurtransferase; 1.8A {Azotobacter vinelandii} SCOP: c.46.1.2 c.46.1.2 PDB: 1h4k_X 1h4m_X

Probab=99.86  E-value=1.3e-21  Score=171.04  Aligned_cols=116  Identities=20%  Similarity=0.271  Sum_probs=96.0

Q ss_pred             ccccHHHHHHHhcCCCeEEEEcCChhhhh--------hCCCCCCeeechhhHHhhhhhHHHHHHhhhhhccccCCCCCCh
Q 026264           93 RSVEAKEALRLQKENNFVILDVRPEAEFK--------EAHPPGAINVQIYRLIKEWTAWDIARRAAFAFFGIFSGTEENP  164 (241)
Q Consensus        93 ~~Is~~el~~~l~~~~~~lIDvR~~~Ey~--------~ghIpGAinip~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~  164 (241)
                      ..|+++++.+.+++++++|||||++.||.        .||||||+|+|+..+.+...             + +..   ..
T Consensus       147 ~~i~~~~l~~~l~~~~~~liDvR~~~e~~g~~~~~~~~ghIpgA~~ip~~~~~~~~~-------------~-~~~---~~  209 (271)
T 1e0c_A          147 PTASRDYLLGRLGAADLAIWDARSPQEYRGEKVLAAKGGHIPGAVNFEWTAAMDPSR-------------A-LRI---RT  209 (271)
T ss_dssp             TBCCHHHHHHHTTCTTEEEEECSCHHHHTTSSCCSSSCSBCTTCEECCGGGGEEGGG-------------T-TEE---CT
T ss_pred             ccccHHHHHHHhcCCCcEEEEcCChhhcCCccCCCCcCCcCCCceeccHHHhCCCCC-------------C-CCC---HH
Confidence            46899999999988889999999999999        99999999999998754210             0 000   12


Q ss_pred             HHHhhhhhcCCCCCCeEEEEcCCCCCCCCCCCCCCchhhHHHHHHHHHHHcCCcceeEccccHHHHHhC-CCCccc
Q 026264          165 EFLQTGVESQLDKDAKIIVACATGGTMKPSQNLPEGQQSRSLIAAYLLVLNGYKNVYHLEGGLYKWFKE-ELPEVS  239 (241)
Q Consensus       165 ~~~~~~~~~~i~~~~~IVvyC~~G~~~~~~~~~~~~~~~rs~~aa~~L~~~Gy~nV~~l~GG~~~W~~~-g~p~~~  239 (241)
                      +|.+.+...+++++++||+||++|.              ||..++..|+.+||+||++|+|||.+|.+. |+|+++
T Consensus       210 ~l~~~~~~~~~~~~~~ivvyC~~G~--------------rs~~a~~~L~~~G~~~v~~l~GG~~~W~~~~~~pv~~  271 (271)
T 1e0c_A          210 DIAGRLEELGITPDKEIVTHCQTHH--------------RSGLTYLIAKALGYPRVKGYAGSWGEWGNHPDTPVEL  271 (271)
T ss_dssp             THHHHHHHTTCCTTSEEEEECSSSS--------------HHHHHHHHHHHTTCSCEEECSSHHHHHTTCTTCCCBC
T ss_pred             HHHHHHHHcCCCCCCCEEEECCchH--------------HHHHHHHHHHHcCCCCceeeCCcHHHHhcCCCCCCcC
Confidence            3333322347899999999999998              999999999999999999999999999998 999974

>1e0c_A Rhodanese, sulfurtransferase; sulfur metabolism, thiosulfate:cyanide sulfurtransferase; 1.8A {Azotobacter vinelandii} SCOP: c.46.1.2 c.46.1.2 PDB: 1h4k_X 1h4m_X

Probab=99.86  E-value=1.9e-21  Score=170.00  Aligned_cols=122  Identities=22%  Similarity=0.244  Sum_probs=97.8

Q ss_pred             ccccHHHHHHHhcCCCeEEEEcCChhhhhhCCCCCCeeechhhHHhhhhhHHHHHHhhhhhccccCCCCCChHHHhhhhh
Q 026264           93 RSVEAKEALRLQKENNFVILDVRPEAEFKEAHPPGAINVQIYRLIKEWTAWDIARRAAFAFFGIFSGTEENPEFLQTGVE  172 (241)
Q Consensus        93 ~~Is~~el~~~l~~~~~~lIDvR~~~Ey~~ghIpGAinip~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  172 (241)
                      ..|+++++.+++++++++|||||++.||..||||||+|||+..+......          ..+++   .....|.+.+..
T Consensus         9 ~~is~~~l~~~l~~~~~~iiDvR~~~ey~~ghIpgA~~ip~~~l~~~~~~----------~~~~~---~~~~~~~~~~~~   75 (271)
T 1e0c_A            9 LVIEPADLQARLSAPELILVDLTSAARYAEGHIPGARFVDPKRTQLGQPP----------APGLQ---PPREQLESLFGE   75 (271)
T ss_dssp             SEECHHHHHTTTTCTTEEEEECSCHHHHHHCBSTTCEECCGGGGSCCCTT----------CTTSC---CCHHHHHHHHHH
T ss_pred             ceeeHHHHHHhccCCCeEEEEcCCcchhhhCcCCCCEECCHHHhccCCCC----------CCCCC---CCHHHHHHHHHH
Confidence            47999999999977789999999999999999999999999876542100          01111   122344433233


Q ss_pred             cCCCCCCeEEEEcCCCCCCCCCCCCCCchhhHHHHHHHHHHHcCCcceeEccccHHHHHhCCCCcccC
Q 026264          173 SQLDKDAKIIVACATGGTMKPSQNLPEGQQSRSLIAAYLLVLNGYKNVYHLEGGLYKWFKEELPEVSE  240 (241)
Q Consensus       173 ~~i~~~~~IVvyC~~G~~~~~~~~~~~~~~~rs~~aa~~L~~~Gy~nV~~l~GG~~~W~~~g~p~~~g  240 (241)
                      .+++++++|||||+.|.             .+|.++++.|+.+||++|++|+||+.+|..+|+|++++
T Consensus        76 ~gi~~~~~vvvyc~~g~-------------~~s~~a~~~L~~~G~~~v~~L~GG~~~w~~~g~p~~~~  130 (271)
T 1e0c_A           76 LGHRPEAVYVVYDDEGG-------------GWAGRFIWLLDVIGQQRYHYLNGGLTAWLAEDRPLSRE  130 (271)
T ss_dssp             HTCCTTCEEEEECSSSS-------------HHHHHHHHHHHHTTCCCEEEETTHHHHHHHTTCCCBCC
T ss_pred             cCCCCCCeEEEEcCCCC-------------ccHHHHHHHHHHcCCCCeEEecCCHHHHHHcCCCccCC
Confidence            46899999999999986             48999999999999999999999999999999999875

>3g5j_A Putative ATP/GTP binding protein; N-terminal domain of ATP/GTP binding protein, PSI, MCSG, STR genomics, protein structure initiative; HET: PGE; 1.76A {Clostridium difficile}

Probab=99.85  E-value=6e-22  Score=154.94  Aligned_cols=118  Identities=25%  Similarity=0.387  Sum_probs=83.9

Q ss_pred             cccccHHHHHHHhcCCCeEEEEcCChhhhhhCCCCCCeeechhhHHhhhhhH--------HHHHHhhhhhccccCCCCCC
Q 026264           92 VRSVEAKEALRLQKENNFVILDVRPEAEFKEAHPPGAINVQIYRLIKEWTAW--------DIARRAAFAFFGIFSGTEEN  163 (241)
Q Consensus        92 ~~~Is~~el~~~l~~~~~~lIDvR~~~Ey~~ghIpGAinip~~~l~~~~~~~--------~~~~~~~~~~~~~~~~~~~~  163 (241)
                      +..|+++++.+   .++++|||||++.||..||||||+|||+..+.......        ..+...++.+..     +..
T Consensus         4 ~~~i~~~el~~---~~~~~iiDvR~~~e~~~ghIpgA~nip~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~   75 (134)
T 3g5j_A            4 MSVIKIEKALK---LDKVIFVDVRTEGEYEEDHILNAINMPLFKNNEHNEVGTIYKMQGKHEAIQKGFDYVS-----YKL   75 (134)
T ss_dssp             -CEECHHHHTT---CTTEEEEECSCHHHHHHCCCTTCEECCSSCHHHHHHHHHHHHHHCHHHHHHHHHHHHG-----GGH
T ss_pred             ccccCHHHHHh---cCCcEEEEcCCHHHHhcCCCCCCEEcCccchhhhhcccceeeecChhHHHhccccccc-----ccH
Confidence            56799998876   56899999999999999999999999997654321100        001111111111     112


Q ss_pred             hHHHhhhhhcCCCCC-CeEEEEc-CCCCCCCCCCCCCCchhhHHHHHHHHHHHcCCcceeEccccHHHHHhCC
Q 026264          164 PEFLQTGVESQLDKD-AKIIVAC-ATGGTMKPSQNLPEGQQSRSLIAAYLLVLNGYKNVYHLEGGLYKWFKEE  234 (241)
Q Consensus       164 ~~~~~~~~~~~i~~~-~~IVvyC-~~G~~~~~~~~~~~~~~~rs~~aa~~L~~~Gy~nV~~l~GG~~~W~~~g  234 (241)
                      +++.+.  ...++++ ++||||| ++|.              ||..+++.|+.+|| ||++|+||+.+|.+..
T Consensus        76 ~~~~~~--~~~~~~~~~~ivvyC~~~G~--------------rs~~a~~~L~~~G~-~v~~l~GG~~~W~~~~  131 (134)
T 3g5j_A           76 KDIYLQ--AAELALNYDNIVIYCARGGM--------------RSGSIVNLLSSLGV-NVYQLEGGYKAYRNFV  131 (134)
T ss_dssp             HHHHHH--HHHHHTTCSEEEEECSSSSH--------------HHHHHHHHHHHTTC-CCEEETTHHHHHHHHH
T ss_pred             HHHHHH--HHHhccCCCeEEEEECCCCh--------------HHHHHHHHHHHcCC-ceEEEeCcHHHHHHHh
Confidence            333333  2335677 9999999 4776              99999999999999 9999999999998753

>3hzu_A Thiosulfate sulfurtransferase SSEA; niaid, ssgcid, infectious disease, transferase structural genomics; 2.10A {Mycobacterium tuberculosis} PDB: 3p3a_A

Probab=99.85  E-value=2.4e-21  Score=174.41  Aligned_cols=120  Identities=16%  Similarity=0.225  Sum_probs=96.6

Q ss_pred             ccccHHHHHHHhcCCCeEEEEcCChhh-hhhCCCCCCeeechhhHHhhhhhHHHHHHhhhhhccccCCCCCChHHHhhhh
Q 026264           93 RSVEAKEALRLQKENNFVILDVRPEAE-FKEAHPPGAINVQIYRLIKEWTAWDIARRAAFAFFGIFSGTEENPEFLQTGV  171 (241)
Q Consensus        93 ~~Is~~el~~~l~~~~~~lIDvR~~~E-y~~ghIpGAinip~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  171 (241)
                      ..|+++++.+++++++++|||||++.| |..||||||+|||+.......            ..+.+   .+..+|.+.+.
T Consensus        40 ~~is~~~l~~~l~~~~~~iiDvR~~~e~y~~gHIpGAi~ip~~~~~~~~------------~~~~~---~~~~~~~~~l~  104 (318)
T 3hzu_A           40 RLVTADWLSAHMGAPGLAIVESDEDVLLYDVGHIPGAVKIDWHTDLNDP------------RVRDY---INGEQFAELMD  104 (318)
T ss_dssp             GEECHHHHHHHTTCTTEEEEECCSSTTSGGGCBCTTEEECCHHHHHBCS------------SSSSB---CCHHHHHHHHH
T ss_pred             ceecHHHHHHhccCCCEEEEECCCChhHHhcCcCCCCeEeCchhhhccC------------cccCC---CCHHHHHHHHH
Confidence            469999999999888899999999877 999999999999986433210            00111   12234444433


Q ss_pred             hcCCCCCCeEEEEcCCCCCCCCCCCCCCchhhHHHHHHHHHHHcCCcceeEccccHHHHHhCCCCcccC
Q 026264          172 ESQLDKDAKIIVACATGGTMKPSQNLPEGQQSRSLIAAYLLVLNGYKNVYHLEGGLYKWFKEELPEVSE  240 (241)
Q Consensus       172 ~~~i~~~~~IVvyC~~G~~~~~~~~~~~~~~~rs~~aa~~L~~~Gy~nV~~l~GG~~~W~~~g~p~~~g  240 (241)
                      ..+++++++|||||++|.+             +|.++++.|+.+||+||++|+||+.+|.++|+|++++
T Consensus       105 ~lgi~~~~~vVvyc~~g~~-------------~a~~a~~~L~~~G~~~V~~L~GG~~~W~~~g~p~~~~  160 (318)
T 3hzu_A          105 RKGIARDDTVVIYGDKSNW-------------WAAYALWVFTLFGHADVRLLNGGRDLWLAERRETTLD  160 (318)
T ss_dssp             HTTCCTTCEEEEECSGGGH-------------HHHHHHHHHHHTTCSCEEEETTHHHHHHHTTCCCBCC
T ss_pred             HcCCCCCCeEEEECCCCCc-------------cHHHHHHHHHHcCCCceEEccCCHHHHhhcCCCcccC
Confidence            3568999999999999863             8999999999999999999999999999999999875

>2jtq_A Phage shock protein E; solution structure rhodanese, stress response, transferase; NMR {Escherichia coli} PDB: 2jtr_A 2jts_A

Probab=99.85  E-value=7.7e-22  Score=144.24  Aligned_cols=85  Identities=29%  Similarity=0.444  Sum_probs=71.9

Q ss_pred             CeEEEEcCChhhhhhCCCCCCeeechhhHHhhhhhHHHHHHhhhhhccccCCCCCChHHHhhhhhcCCCCCCeEEEEcCC
Q 026264          108 NFVILDVRPEAEFKEAHPPGAINVQIYRLIKEWTAWDIARRAAFAFFGIFSGTEENPEFLQTGVESQLDKDAKIIVACAT  187 (241)
Q Consensus       108 ~~~lIDvR~~~Ey~~ghIpGAinip~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~IVvyC~~  187 (241)
                      +++|||||++.||..||||||+|+|+..+...                           +.+   ..++++++||+||++
T Consensus         1 ~~~liDvR~~~e~~~ghIpgA~~ip~~~l~~~---------------------------~~~---l~~~~~~~ivv~C~~   50 (85)
T 2jtq_A            1 AEHWIDVRVPEQYQQEHVQGAINIPLKEVKER---------------------------IAT---AVPDKNDTVKVYCNA   50 (85)
T ss_dssp             CEEEEECSCHHHHTTEEETTCEECCHHHHHHH---------------------------HHH---HCCCTTSEEEEEESS
T ss_pred             CCEEEECCCHHHHHhCCCCCCEEcCHHHHHHH---------------------------HHH---hCCCCCCcEEEEcCC
Confidence            47899999999999999999999999876531                           111   245889999999999


Q ss_pred             CCCCCCCCCCCCchhhHHHHHHHHHHHcCCcceeEccccHHHHHhCCCCcccC
Q 026264          188 GGTMKPSQNLPEGQQSRSLIAAYLLVLNGYKNVYHLEGGLYKWFKEELPEVSE  240 (241)
Q Consensus       188 G~~~~~~~~~~~~~~~rs~~aa~~L~~~Gy~nV~~l~GG~~~W~~~g~p~~~g  240 (241)
                      |.              ||..+++.|+++||++|+++ |||.+|.   .|+++|
T Consensus        51 g~--------------rs~~aa~~L~~~G~~~v~~l-GG~~~w~---~~~~~g   85 (85)
T 2jtq_A           51 GR--------------QSGQAKEILSEMGYTHVENA-GGLKDIA---MPKVKG   85 (85)
T ss_dssp             SH--------------HHHHHHHHHHHTTCSSEEEE-EETTTCC---SCEEEC
T ss_pred             Cc--------------hHHHHHHHHHHcCCCCEEec-cCHHHHh---cccccC
Confidence            87              99999999999999999999 9988884   566654

>1c25_A CDC25A; hydrolase, cell cycle phosphatase,dual specificity protein phosphatase, CDK2; 2.30A {Homo sapiens} SCOP: c.46.1.1

Probab=99.84  E-value=3.9e-21  Score=156.22  Aligned_cols=109  Identities=17%  Similarity=0.340  Sum_probs=88.4

Q ss_pred             ccccccHHHHHHHhcC------CCeEEEEcCChhhhhhCCCCCCeeechhhHHhhhhhHHHHHHhhhhhccccCCCCCCh
Q 026264           91 RVRSVEAKEALRLQKE------NNFVILDVRPEAEFKEAHPPGAINVQIYRLIKEWTAWDIARRAAFAFFGIFSGTEENP  164 (241)
Q Consensus        91 ~~~~Is~~el~~~l~~------~~~~lIDvR~~~Ey~~ghIpGAinip~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~  164 (241)
                      .+..|+++++.+++++      ++++|||||++.||..||||||+|||+..+...+                        
T Consensus        21 ~~~~is~~el~~~l~~~~~~~~~~~~liDvR~~~e~~~ghIpgAinip~~~~~~~~------------------------   76 (161)
T 1c25_A           21 DLKYISPEIMASVLNGKFANLIKEFVIIDCRYPYEYEGGHIKGAVNLHMEEEVEDF------------------------   76 (161)
T ss_dssp             TSCEECHHHHHHHHTTTTTTTEEEEEEEECSCHHHHHTCEETTCEECCSHHHHHHH------------------------
T ss_pred             CcceeCHHHHHHHHhccccccCCCeEEEECCChHHccCCcccCcEeCChhHHHHHH------------------------
Confidence            3467999999999976      3789999999999999999999999998775421                        


Q ss_pred             HHHhhhhhcCCCCCCeE--EEEcC-CCCCCCCCCCCCCchhhHHHHHHHHHHHc----------CCcceeEccccHHHHH
Q 026264          165 EFLQTGVESQLDKDAKI--IVACA-TGGTMKPSQNLPEGQQSRSLIAAYLLVLN----------GYKNVYHLEGGLYKWF  231 (241)
Q Consensus       165 ~~~~~~~~~~i~~~~~I--VvyC~-~G~~~~~~~~~~~~~~~rs~~aa~~L~~~----------Gy~nV~~l~GG~~~W~  231 (241)
                        +.. .....+++++|  |+||. +|.              ||..++..|++.          ||+||++|+||+.+|.
T Consensus        77 --~~~-~~~~~~~~~~ivvv~yC~~sg~--------------rs~~aa~~L~~~~~~~~~l~~~G~~~v~~l~GG~~~W~  139 (161)
T 1c25_A           77 --LLK-KPIVPTDGKRVIVVFHCEFSSE--------------RGPRMCRYVRERDRLGNEYPKLHYPELYVLKGGYKEFF  139 (161)
T ss_dssp             --TTT-SCCCCCTTSEEEEEEECSSSSS--------------HHHHHHHHHHHHHHHTSSTTCCSSCCEEEETTHHHHHH
T ss_pred             --Hhh-hhhccCCCCCeEEEEEcCCCCc--------------chHHHHHHHHHHHHhhhhccccCCceEEEEcCCHHHHH
Confidence              000 00123577775  68899 877              999999999864          9999999999999999


Q ss_pred             hCCCCcccC
Q 026264          232 KEELPEVSE  240 (241)
Q Consensus       232 ~~g~p~~~g  240 (241)
                      +.|.|+..+
T Consensus       140 ~~~~~~~~~  148 (161)
T 1c25_A          140 MKCQSYCEP  148 (161)
T ss_dssp             HHHGGGEES
T ss_pred             HHcccccCC
Confidence            999988764

>1rhs_A Sulfur-substituted rhodanese; transferase, sulfurtransferase; 1.36A {Bos taurus} SCOP: c.46.1.2 c.46.1.2 PDB: 1boh_A 1boi_A 1orb_A 2ora_A 1dp2_A* 1rhd_A

Probab=99.84  E-value=4.7e-21  Score=170.18  Aligned_cols=117  Identities=21%  Similarity=0.359  Sum_probs=95.8

Q ss_pred             ccccHHHHHHHhcCCCeEEEEcCChhhh------------hhCCCCCCeeechhhHHhhhhhHHHHHHhhhhhccccCCC
Q 026264           93 RSVEAKEALRLQKENNFVILDVRPEAEF------------KEAHPPGAINVQIYRLIKEWTAWDIARRAAFAFFGIFSGT  160 (241)
Q Consensus        93 ~~Is~~el~~~l~~~~~~lIDvR~~~Ey------------~~ghIpGAinip~~~l~~~~~~~~~~~~~~~~~~~~~~~~  160 (241)
                      ..|+++++.+++++++++|||||++.||            ..||||||+|||+..+.+..              +    .
T Consensus       160 ~~i~~~e~~~~~~~~~~~liDvR~~~e~~G~~~~~~~~~~~~ghIpgA~nip~~~l~~~~--------------~----~  221 (296)
T 1rhs_A          160 LLKTYEQVLENLESKRFQLVDSRAQGRYLGTQPEPDAVGLDSGHIRGSVNMPFMNFLTED--------------G----F  221 (296)
T ss_dssp             GEECHHHHHHHHHHCCSEEEECSCHHHHHTSSCCSSSSSCCCCEETTCEECCGGGGBCTT--------------S----C
T ss_pred             eEEcHHHHHHHhcCCCceEEeCCchhhcccccCCcccCCCcCccCCCCEeecHHHhcCCC--------------C----c
Confidence            5799999999988778999999999999            78999999999998875421              0    0


Q ss_pred             CCChHHHhh-hhhcCCCCCCeEEEEcCCCCCCCCCCCCCCchhhHHHHHHHHHHHcCCcceeEccccHHHHHh-CCCCcc
Q 026264          161 EENPEFLQT-GVESQLDKDAKIIVACATGGTMKPSQNLPEGQQSRSLIAAYLLVLNGYKNVYHLEGGLYKWFK-EELPEV  238 (241)
Q Consensus       161 ~~~~~~~~~-~~~~~i~~~~~IVvyC~~G~~~~~~~~~~~~~~~rs~~aa~~L~~~Gy~nV~~l~GG~~~W~~-~g~p~~  238 (241)
                      -.+++.++. +...+++++++|||||++|.              ||..++..|+.+||+||++|+|||.+|.. .|+|++
T Consensus       222 ~~~~~~l~~~~~~~~~~~~~~ivv~C~sG~--------------rs~~a~~~L~~~G~~~v~~~~GG~~~W~~~~~~pv~  287 (296)
T 1rhs_A          222 EKSPEELRAMFEAKKVDLTKPLIATCRKGV--------------TACHIALAAYLCGKPDVAIYDGSWFEWFHRAPPETW  287 (296)
T ss_dssp             BCCHHHHHHHHHHTTCCTTSCEEEECSSSS--------------THHHHHHHHHHTTCCCCEEESSHHHHHHHHSCGGGE
T ss_pred             CCCHHHHHHHHHHcCCCCCCCEEEECCcHH--------------HHHHHHHHHHHcCCCCceeeCCcHHHHhcCCCCCcc
Confidence            112222222 12236889999999999998              99999999999999999999999999998 799998


Q ss_pred             cCC
Q 026264          239 SEE  241 (241)
Q Consensus       239 ~g~  241 (241)
                      +++
T Consensus       288 ~~~  290 (296)
T 1rhs_A          288 VSQ  290 (296)
T ss_dssp             EBT
T ss_pred             cCC
Confidence            763

>3aay_A Putative thiosulfate sulfurtransferase; sulfurtranserase, structural genomics, PSI, structure initiative; 1.90A {Mycobacterium tuberculosis} PDB: 3aax_A 3hwi_A

Probab=99.83  E-value=8.2e-21  Score=166.48  Aligned_cols=120  Identities=20%  Similarity=0.231  Sum_probs=95.0

Q ss_pred             ccccHHHHHHHhcCCCeEEEEcCC-hhhhhhCCCCCCeeechhhHHhhhhhHHHHHHhhhhhccccCCCCCChHHHhhhh
Q 026264           93 RSVEAKEALRLQKENNFVILDVRP-EAEFKEAHPPGAINVQIYRLIKEWTAWDIARRAAFAFFGIFSGTEENPEFLQTGV  171 (241)
Q Consensus        93 ~~Is~~el~~~l~~~~~~lIDvR~-~~Ey~~ghIpGAinip~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  171 (241)
                      ..|+++++.+++++++++|||||+ +.||..||||||+|||+..+....            ..+.+   .....|.+.+.
T Consensus         6 ~~is~~~l~~~l~~~~~~liDvR~~~~ey~~ghIpgA~~ip~~~~~~~~------------~~~~~---~~~~~~~~~~~   70 (277)
T 3aay_A            6 VLVSADWAESNLHAPKVVFVEVDEDTSAYDRDHIAGAIKLDWRTDLQDP------------VKRDF---VDAQQFSKLLS   70 (277)
T ss_dssp             HEECHHHHHTTTTCTTEEEEEEESSSHHHHHCBSTTCEEEETTTTTBCS------------SSSSB---CCHHHHHHHHH
T ss_pred             ceEcHHHHHHHhCCCCEEEEEcCCChhhHhhCCCCCcEEecccccccCC------------CCCCC---CCHHHHHHHHH
Confidence            369999999999877899999998 899999999999999987643210            00111   11123333323


Q ss_pred             hcCCCCCCeEEEEcCCCCCCCCCCCCCCchhhHHHHHHHHHHHcCCcceeEccccHHHHHhCCCCcccC
Q 026264          172 ESQLDKDAKIIVACATGGTMKPSQNLPEGQQSRSLIAAYLLVLNGYKNVYHLEGGLYKWFKEELPEVSE  240 (241)
Q Consensus       172 ~~~i~~~~~IVvyC~~G~~~~~~~~~~~~~~~rs~~aa~~L~~~Gy~nV~~l~GG~~~W~~~g~p~~~g  240 (241)
                      ..+++++++|||||++|.             .+|.++++.|+.+||++|++|+||+.+|.++|+|++++
T Consensus        71 ~~gi~~~~~vvvyc~~g~-------------~~s~~a~~~L~~~G~~~v~~l~GG~~~W~~~g~p~~~~  126 (277)
T 3aay_A           71 ERGIANEDTVILYGGNNN-------------WFAAYAYWYFKLYGHEKVKLLDGGRKKWELDGRPLSSD  126 (277)
T ss_dssp             HHTCCTTSEEEEECSGGG-------------HHHHHHHHHHHHTTCCSEEEETTHHHHHHHTTCCCBCC
T ss_pred             HcCCCCCCeEEEECCCCC-------------chHHHHHHHHHHcCCCcEEEecCCHHHHHHcCCccccC
Confidence            346899999999999875             27999999999999999999999999999999999875

>2ouc_A Dual specificity protein phosphatase 10; rhodanese fold, hydrolase; 2.20A {Homo sapiens}

Probab=99.83  E-value=3.3e-21  Score=151.94  Aligned_cols=125  Identities=18%  Similarity=0.173  Sum_probs=83.1

Q ss_pred             cccHHHHHH--------HhcCCCeEEEEcCChhhhhhCCCCCCeeechhhHHhhhhhHHHHHHhhhhhccccCCCCCChH
Q 026264           94 SVEAKEALR--------LQKENNFVILDVRPEAEFKEAHPPGAINVQIYRLIKEWTAWDIARRAAFAFFGIFSGTEENPE  165 (241)
Q Consensus        94 ~Is~~el~~--------~l~~~~~~lIDvR~~~Ey~~ghIpGAinip~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  165 (241)
                      .|+++|+.+        .+++++++|||||++.||..||||||+|+|+..+...+..    .          .+....++
T Consensus         2 ~Is~~~l~~~l~~~~~~~l~~~~~~iiDvR~~~e~~~ghIpgA~~ip~~~~~~~~~~----~----------~~~~~~~~   67 (142)
T 2ouc_A            2 IIYPNDLAKKMTKCSKSHLPSQGPVIIDCRPFMEYNKSHIQGAVHINCADKISRRRL----Q----------QGKITVLD   67 (142)
T ss_dssp             EECHHHHHHHHHC----------CEEEECSCHHHHHHEEETTCEECCCSSHHHHHHH----H----------TTSSCHHH
T ss_pred             ccCHHHHHHHHHhcccccCCCCCCEEEEeCCHHHhhhhhccCccccCccHHHHHHHh----h----------cCCcchhh
Confidence            588999988        5666689999999999999999999999999876542100    0          00111122


Q ss_pred             HHhhhhhcCCC-----CCCeEEEEcCCCCCCCCCCCCCCchhhHHHHHHHHHHHcCCcceeEccccHHHHHhCCCCcccC
Q 026264          166 FLQTGVESQLD-----KDAKIIVACATGGTMKPSQNLPEGQQSRSLIAAYLLVLNGYKNVYHLEGGLYKWFKEELPEVSE  240 (241)
Q Consensus       166 ~~~~~~~~~i~-----~~~~IVvyC~~G~~~~~~~~~~~~~~~rs~~aa~~L~~~Gy~nV~~l~GG~~~W~~~g~p~~~g  240 (241)
                      ++.. . ....     ++++|||||++|.....  .   ..+.++..++..|...|| +|++|+||+.+|.++|.|+.++
T Consensus        68 ~~~~-~-~~~~~~~~~~~~~ivvyc~~g~~~~~--~---~~~~~~~~~~~~L~~~G~-~v~~l~GG~~~w~~~g~~~~~~  139 (142)
T 2ouc_A           68 LISC-R-EGKDSFKRIFSKEIIVYDENTNEPSR--V---MPSQPLHIVLESLKREGK-EPLVLKGGLSSFKQNHENLCDN  139 (142)
T ss_dssp             HHHT-T-SCTTHHHHHHHSCEEEECSSCCCGGG--C---CTTSHHHHHHHHHHHTTC-CCEEETTHHHHHTTTCGGGEEE
T ss_pred             hCCC-h-hhhHHHhccCCCcEEEEECCCCchhh--c---CcccHHHHHHHHHHHcCC-cEEEEccCHHHHHHHCHHhhcc
Confidence            2211 0 0011     36899999999972100  0   001235678889999999 9999999999999999998764

>4f67_A UPF0176 protein LPG2838; structural genomics, PSI-biology, protein structure initiati northeast structural genomics consortium; 1.79A {Legionella pneumophila subsp}

Probab=99.83  E-value=6.3e-21  Score=168.22  Aligned_cols=147  Identities=20%  Similarity=0.269  Sum_probs=114.3

Q ss_pred             cCCCCCCCCceEEeecCchhhhHhhhccCCCCCCccccCCCCCCCCCCCccchHHHHHHHhhhccccccHHHHHHHhcCC
Q 026264           28 LAPKTNQDTTICCLTVRSFTFSRRRLSSQSVPRGLIIQNAATKPAKSPAEEDWKTKRELLLQKRVRSVEAKEALRLQKEN  107 (241)
Q Consensus        28 ~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~g~~~~~~~~~p~~~~~~~~~~~~~~~l~~~~~~~Is~~el~~~l~~~  107 (241)
                      |.|.+ -+.+..+.....|..++.+++...+..|+...    .|..                .....|+++++.++++++
T Consensus        78 ~~~~~-~~~k~s~~~~~~F~~l~vk~k~eiV~~g~~~~----dp~~----------------~~~~~Is~~el~~ll~~~  136 (265)
T 4f67_A           78 SRFAD-LHFKETYDNKNPFDKAKVKLRKEIVTMGVQKV----DPSY----------------NAGTYLSPEEWHQFIQDP  136 (265)
T ss_dssp             GGGTT-CCCEEEEESSCCCSSEEEEECSSSSCCCCTTC----CCTT----------------CTTCEECHHHHHHHTTCT
T ss_pred             CCCCC-CceeeccccCCCccccccccccccccCCCCCc----Cccc----------------CCCceECHHHHHHHhcCC
Confidence            33443 34455556778889999999999888886521    1211                123579999999999888


Q ss_pred             CeEEEEcCChhhhhhCCCCCCeeechhhHHhhhhhHHHHHHhhhhhccccCCCCCChHHHhhhhhcCCCCCCeEEEEcCC
Q 026264          108 NFVILDVRPEAEFKEAHPPGAINVQIYRLIKEWTAWDIARRAAFAFFGIFSGTEENPEFLQTGVESQLDKDAKIIVACAT  187 (241)
Q Consensus       108 ~~~lIDvR~~~Ey~~ghIpGAinip~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~IVvyC~~  187 (241)
                      +++|||||++.||..||||||+|+|+..+.+.                        ++.+..  ....+++++||+||++
T Consensus       137 ~~vlIDVR~~~Ey~~GHIpGAiniP~~~~~~~------------------------~~~l~~--~l~~~kdk~IVvyC~~  190 (265)
T 4f67_A          137 NVILLDTRNDYEYELGTFKNAINPDIENFREF------------------------PDYVQR--NLIDKKDKKIAMFCTG  190 (265)
T ss_dssp             TSEEEECSCHHHHHHEEETTCBCCCCSSGGGH------------------------HHHHHH--HTGGGTTSCEEEECSS
T ss_pred             CeEEEEeCCchHhhcCcCCCCEeCCHHHHHhh------------------------HHHHHH--hhhhCCCCeEEEEeCC
Confidence            99999999999999999999999999876431                        111211  1223788999999999


Q ss_pred             CCCCCCCCCCCCchhhHHHHHHHHHHHcCCcceeEccccHHHHHhCCC
Q 026264          188 GGTMKPSQNLPEGQQSRSLIAAYLLVLNGYKNVYHLEGGLYKWFKEEL  235 (241)
Q Consensus       188 G~~~~~~~~~~~~~~~rs~~aa~~L~~~Gy~nV~~l~GG~~~W~~~g~  235 (241)
                      |.              ||..++..|+..||+||++|+||+.+|.+..-
T Consensus       191 G~--------------RS~~Aa~~L~~~Gf~nV~~L~GGi~aW~~~~~  224 (265)
T 4f67_A          191 GI--------------RCEKTTAYMKELGFEHVYQLHDGILNYLESIP  224 (265)
T ss_dssp             SH--------------HHHHHHHHHHHHTCSSEEEETTHHHHHHHHSC
T ss_pred             Ch--------------HHHHHHHHHHHcCCCCEEEecCHHHHHHHhcC
Confidence            87              99999999999999999999999999998643

>1rhs_A Sulfur-substituted rhodanese; transferase, sulfurtransferase; 1.36A {Bos taurus} SCOP: c.46.1.2 c.46.1.2 PDB: 1boh_A 1boi_A 1orb_A 2ora_A 1dp2_A* 1rhd_A

Probab=99.83  E-value=1.4e-20  Score=167.03  Aligned_cols=122  Identities=21%  Similarity=0.278  Sum_probs=95.6

Q ss_pred             ccccHHHHHHHhcC----CCeEEEEcC--------ChhhhhhCCCCCCeeechhhHHhhhhhHHHHHHhhhhhccccCCC
Q 026264           93 RSVEAKEALRLQKE----NNFVILDVR--------PEAEFKEAHPPGAINVQIYRLIKEWTAWDIARRAAFAFFGIFSGT  160 (241)
Q Consensus        93 ~~Is~~el~~~l~~----~~~~lIDvR--------~~~Ey~~ghIpGAinip~~~l~~~~~~~~~~~~~~~~~~~~~~~~  160 (241)
                      ..|+++++.+++++    ++++|||||        ++.||..||||||+|+|+..+.+...          ...++   .
T Consensus         8 ~~is~~~l~~~l~~~~~~~~~~liDvR~~~~~~~~~~~ey~~gHIpGAi~ip~~~l~~~~~----------~~~~~---l   74 (296)
T 1rhs_A            8 ALVSTKWLAESVRAGKVGPGLRVLDASWYSPGTREARKEYLERHVPGASFFDIEECRDKAS----------PYEVM---L   74 (296)
T ss_dssp             SEECHHHHHHHHHTTCCBTTEEEEECCCCCTTSCCHHHHHHHSBCTTCEECCTTTSSCTTS----------SSSSC---C
T ss_pred             ceeeHHHHHHHHhccccCCCeEEEEecccCcCCcchhhhHhhCcCCCCEEeCHHHhcCCCC----------CCCCC---C
Confidence            36999999999976    589999999        68999999999999999986543110          00011   1


Q ss_pred             CCChHHHhhhhhcCCCCCCeEEEEcCC--CCCCCCCCCCCCchhhHHHHHHHHHHHcCCcceeEccccHHHHHhCCCCcc
Q 026264          161 EENPEFLQTGVESQLDKDAKIIVACAT--GGTMKPSQNLPEGQQSRSLIAAYLLVLNGYKNVYHLEGGLYKWFKEELPEV  238 (241)
Q Consensus       161 ~~~~~~~~~~~~~~i~~~~~IVvyC~~--G~~~~~~~~~~~~~~~rs~~aa~~L~~~Gy~nV~~l~GG~~~W~~~g~p~~  238 (241)
                      +...+|.+.+...+++++++|||||.+  |.             ..+.++++.|+.+||++|++|+||+.+|.++|+|++
T Consensus        75 p~~~~~~~~l~~lgi~~~~~vVvyc~~~~g~-------------~~a~~a~~~L~~~G~~~V~~L~GG~~~W~~~g~p~~  141 (296)
T 1rhs_A           75 PSEAGFADYVGSLGISNDTHVVVYDGDDLGS-------------FYAPRVWWMFRVFGHRTVSVLNGGFRNWLKEGHPVT  141 (296)
T ss_dssp             CCHHHHHHHHHHTTCCTTCEEEEECCCSSSC-------------SSHHHHHHHHHHTTCCCEEEETTHHHHHHHTTCCCB
T ss_pred             CCHHHHHHHHHHcCCCCCCeEEEEcCCCCCc-------------chHHHHHHHHHHcCCCcEEEcCCCHHHHHHcCCccc
Confidence            122344444333578999999999999  76             148899999999999999999999999999999998


Q ss_pred             cC
Q 026264          239 SE  240 (241)
Q Consensus       239 ~g  240 (241)
                      ++
T Consensus       142 ~~  143 (296)
T 1rhs_A          142 SE  143 (296)
T ss_dssp             CS
T ss_pred             cC
Confidence            76

>1uar_A Rhodanese; sulfurtransferase, riken structural genomics/PROT initiative, RSGI, structural genomics, transferase; 1.70A {Thermus thermophilus} SCOP: c.46.1.2 c.46.1.2

Probab=99.83  E-value=1e-20  Score=166.46  Aligned_cols=117  Identities=25%  Similarity=0.346  Sum_probs=94.3

Q ss_pred             ccccHHHHHHHhc---CCCeEEEEcCChhhhh----------------hCCCCCCeeechhhHHhhhhhHHHHHHhhhhh
Q 026264           93 RSVEAKEALRLQK---ENNFVILDVRPEAEFK----------------EAHPPGAINVQIYRLIKEWTAWDIARRAAFAF  153 (241)
Q Consensus        93 ~~Is~~el~~~l~---~~~~~lIDvR~~~Ey~----------------~ghIpGAinip~~~l~~~~~~~~~~~~~~~~~  153 (241)
                      ..|+++++.+.++   .++..|||||++.||.                .||||||+|||+..+.+..             
T Consensus       146 ~~i~~~el~~~l~~~~~~~~~liDvR~~~e~~g~~~~~~~~~~~~~~~~ghIpgA~~ip~~~~~~~~-------------  212 (285)
T 1uar_A          146 IRAYRDDVLEHIIKVKEGKGALVDVRSPQEYRGELTHMPDYPQEGALRAGHIPGAKNIPWAKAVNPD-------------  212 (285)
T ss_dssp             GEECHHHHHHHHHHHHTTSEEEEECSCHHHHHTCC--------CCCSCCSBCTTCEECCGGGGBCTT-------------
T ss_pred             eEEcHHHHHHHHhhcccCCCcEEEcCCccceeeeccccccccccccccCCcCCCccccCHHHhcCCC-------------
Confidence            4599999999884   2356899999999998                8999999999998875421             


Q ss_pred             ccccCCCCCCh-HHHhhhhhcCCCCCCeEEEEcCCCCCCCCCCCCCCchhhHHHHHHHHHH-HcCCcceeEccccHHHHH
Q 026264          154 FGIFSGTEENP-EFLQTGVESQLDKDAKIIVACATGGTMKPSQNLPEGQQSRSLIAAYLLV-LNGYKNVYHLEGGLYKWF  231 (241)
Q Consensus       154 ~~~~~~~~~~~-~~~~~~~~~~i~~~~~IVvyC~~G~~~~~~~~~~~~~~~rs~~aa~~L~-~~Gy~nV~~l~GG~~~W~  231 (241)
                       +.    -.++ ++.+.+...+++++++|||||++|.              ||..+++.|+ .+||+||++|+|||.+|.
T Consensus       213 -~~----~~~~~~l~~~~~~~g~~~~~~ivvyC~~G~--------------rs~~a~~~L~~~~G~~~v~~l~GG~~~W~  273 (285)
T 1uar_A          213 -GT----FKSAEELRALYEPLGITKDKDIVVYCRIAE--------------RSSHSWFVLKYLLGYPHVKNYDGSWTEWG  273 (285)
T ss_dssp             -SC----BCCHHHHHHHHGGGTCCTTSEEEEECSSHH--------------HHHHHHHHHHTTSCCSCEEEESSHHHHHT
T ss_pred             -Cc----CCCHHHHHHHHHHcCCCCCCCEEEECCchH--------------HHHHHHHHHHHHcCCCCcceeCchHHHHh
Confidence             11    1123 3333323345899999999999997              9999999999 999999999999999998


Q ss_pred             -hCCCCcccCC
Q 026264          232 -KEELPEVSEE  241 (241)
Q Consensus       232 -~~g~p~~~g~  241 (241)
                       +.|+|+++|+
T Consensus       274 ~~~g~pv~~g~  284 (285)
T 1uar_A          274 NLVGVPIAKGE  284 (285)
T ss_dssp             TSTTCCCBCSC
T ss_pred             cCCCCCcccCC
Confidence             7899999874

>1urh_A 3-mercaptopyruvate sulfurtransferase; rhodanese; 2.8A {Escherichia coli} SCOP: c.46.1.2 c.46.1.2

Probab=99.83  E-value=6.6e-21  Score=167.51  Aligned_cols=115  Identities=28%  Similarity=0.412  Sum_probs=85.5

Q ss_pred             ccccHHHHHHHhcCCCeEEEEcCChhhh-----------hhCCCCCCeeechhhHHhhhhhHHHHHHhhhhhccccCCCC
Q 026264           93 RSVEAKEALRLQKENNFVILDVRPEAEF-----------KEAHPPGAINVQIYRLIKEWTAWDIARRAAFAFFGIFSGTE  161 (241)
Q Consensus        93 ~~Is~~el~~~l~~~~~~lIDvR~~~Ey-----------~~ghIpGAinip~~~l~~~~~~~~~~~~~~~~~~~~~~~~~  161 (241)
                      ..|+++++.+++++++++|||||++.||           ..||||||+|||+..+.++.                   .-
T Consensus       152 ~~i~~~e~~~~~~~~~~~liDvR~~~e~~G~~~~~~~~~~~ghIpgA~nip~~~~~~~~-------------------~~  212 (280)
T 1urh_A          152 AVVKVTDVLLASHENTAQIIDARPAARFNAEVDEPRPGLRRGHIPGALNVPWTELVREG-------------------EL  212 (280)
T ss_dssp             GBCCHHHHHHHHHHTCSEEEECSCHHHHSSCCCC----CCSSSCTTCEECCGGGGBSSS-------------------SB
T ss_pred             cEEcHHHHHHHhcCCCcEEEeCCchhhcccccCCCCCCCcCccCCCceEeeHHHhhcCC-------------------cc
Confidence            4699999999998778999999999999           68999999999998875410                   01


Q ss_pred             CChHHHhh-hhhcCCCCCCeEEEEcCCCCCCCCCCCCCCchhhHHHHHHHHHHHcCCcceeEccccHHHHHh-CCCCccc
Q 026264          162 ENPEFLQT-GVESQLDKDAKIIVACATGGTMKPSQNLPEGQQSRSLIAAYLLVLNGYKNVYHLEGGLYKWFK-EELPEVS  239 (241)
Q Consensus       162 ~~~~~~~~-~~~~~i~~~~~IVvyC~~G~~~~~~~~~~~~~~~rs~~aa~~L~~~Gy~nV~~l~GG~~~W~~-~g~p~~~  239 (241)
                      ..++.+++ +...+++++++|||||++|.              ||..++..|+.+||+||++|+|||.+|.. .|+|+++
T Consensus       213 ~~~~~l~~~~~~~~~~~~~~ivv~C~~G~--------------rs~~a~~~L~~~G~~~v~~~~GG~~~W~~~~~~Pv~~  278 (280)
T 1urh_A          213 KTTDELDAIFFGRGVSYDKPIIVSCGSGV--------------TAAVVLLALATLDVPNVKLYDGAWSEWGARADLPVEP  278 (280)
T ss_dssp             CCHHHHHHHHHTTTCCSSSCEEEECCSSS--------------THHHHHHHHHHTTCSSCEEECCSCCC-----------
T ss_pred             CCHHHHHHHHHHcCCCCCCCEEEECChHH--------------HHHHHHHHHHHcCCCCceeeCChHHHHhcCCCCCcee
Confidence            12222222 12246889999999999998              99999999999999999999999999987 4999986


Q ss_pred             C
Q 026264          240 E  240 (241)
Q Consensus       240 g  240 (241)
                      .
T Consensus       279 ~  279 (280)
T 1urh_A          279 V  279 (280)
T ss_dssp             -
T ss_pred             c
Confidence            4

>3hzu_A Thiosulfate sulfurtransferase SSEA; niaid, ssgcid, infectious disease, transferase structural genomics; 2.10A {Mycobacterium tuberculosis} PDB: 3p3a_A

Probab=99.83  E-value=1.1e-20  Score=170.13  Aligned_cols=113  Identities=23%  Similarity=0.366  Sum_probs=94.5

Q ss_pred             cccHHHHHHHhcCCCeEEEEcCChhhhhh----------------CCCCCCeeechhhHHhhhhhHHHHHHhhhhhcccc
Q 026264           94 SVEAKEALRLQKENNFVILDVRPEAEFKE----------------AHPPGAINVQIYRLIKEWTAWDIARRAAFAFFGIF  157 (241)
Q Consensus        94 ~Is~~el~~~l~~~~~~lIDvR~~~Ey~~----------------ghIpGAinip~~~l~~~~~~~~~~~~~~~~~~~~~  157 (241)
                      .|+++++.+.+++.  +|||||++.||..                ||||||+|||+..+.+..                 
T Consensus       180 ~i~~~el~~~l~~~--~liDvR~~~e~~~~~~~~~~~~~~~~~~~GhIpGA~niP~~~~~~~~-----------------  240 (318)
T 3hzu_A          180 RAFRDDVLAILGAQ--PLIDVRSPEEYTGKRTHMPDYPEEGALRAGHIPTAVHIPWGKAADES-----------------  240 (318)
T ss_dssp             BCCHHHHHHHTTTS--CEEECSCHHHHHTSCSSCTTSCSCSCSSCSBCTTCEECCGGGGBCTT-----------------
T ss_pred             cccHHHHHHhhcCC--eEEecCCHHHhcccccCccccccccCCcCcCCCCeeecCHHHhcCCC-----------------
Confidence            58899999998764  8999999999998                999999999998775421                 


Q ss_pred             CCCCCChHHHhhhhhcCCCCCCeEEEEcCCCCCCCCCCCCCCchhhHHHHHHHHHHH-cCCcceeEccccHHHHHh-CCC
Q 026264          158 SGTEENPEFLQTGVESQLDKDAKIIVACATGGTMKPSQNLPEGQQSRSLIAAYLLVL-NGYKNVYHLEGGLYKWFK-EEL  235 (241)
Q Consensus       158 ~~~~~~~~~~~~~~~~~i~~~~~IVvyC~~G~~~~~~~~~~~~~~~rs~~aa~~L~~-~Gy~nV~~l~GG~~~W~~-~g~  235 (241)
                       +.-..++.+++ ...+++++++||+||++|.              ||..++..|.+ +||+||++|+|||.+|.. .|+
T Consensus       241 -g~~~~~~~l~~-~~~~l~~~~~ivvyC~sG~--------------rs~~a~~~L~~~~G~~~v~~~~GG~~~W~~~~g~  304 (318)
T 3hzu_A          241 -GRFRSREELER-LYDFINPDDQTVVYCRIGE--------------RSSHTWFVLTHLLGKADVRNYDGSWTEWGNAVRV  304 (318)
T ss_dssp             -SCBCCHHHHHH-HTTTCCTTCCCEEECSSSH--------------HHHHHHHHHHHTSCCSSCEECTTHHHHHTTSTTC
T ss_pred             -CcCCCHHHHHH-HhcCCCCCCcEEEEcCChH--------------HHHHHHHHHHHHcCCCCeeEeCCcHHHHhcCCCC
Confidence             11123344444 3367899999999999997              99999999997 999999999999999995 699


Q ss_pred             CcccCC
Q 026264          236 PEVSEE  241 (241)
Q Consensus       236 p~~~g~  241 (241)
                      |+++|+
T Consensus       305 Pv~~g~  310 (318)
T 3hzu_A          305 PIVAGE  310 (318)
T ss_dssp             CCBCSS
T ss_pred             CcccCC
Confidence            999874

>3aay_A Putative thiosulfate sulfurtransferase; sulfurtranserase, structural genomics, PSI, structure initiative; 1.90A {Mycobacterium tuberculosis} PDB: 3aax_A 3hwi_A

Probab=99.83  E-value=9.3e-21  Score=166.13  Aligned_cols=114  Identities=29%  Similarity=0.369  Sum_probs=91.4

Q ss_pred             cccHHHHHHHhcCCCeEEEEcCChhhhhh----------------CCCCCCeeechhhHHhhhhhHHHHHHhhhhhcccc
Q 026264           94 SVEAKEALRLQKENNFVILDVRPEAEFKE----------------AHPPGAINVQIYRLIKEWTAWDIARRAAFAFFGIF  157 (241)
Q Consensus        94 ~Is~~el~~~l~~~~~~lIDvR~~~Ey~~----------------ghIpGAinip~~~l~~~~~~~~~~~~~~~~~~~~~  157 (241)
                      .++++++.+++++++  |||||++.||..                ||||||+|||+..+.+..              +.+
T Consensus       145 ~~~~~el~~~~~~~~--liDvR~~~e~~~~~~~~~~~~~~~~~~~ghIpgA~~ip~~~~~~~~--------------~~~  208 (277)
T 3aay_A          145 RAFRDEVLAAINVKN--LIDVRSPDEFSGKILAPAHLPQEQSQRPGHIPGAINVPWSRAANED--------------GTF  208 (277)
T ss_dssp             EECHHHHHHTTTTSE--EEECSCHHHHHTSCCC-----CCCCSCCSBCTTCEECCGGGGBCTT--------------SCB
T ss_pred             hcCHHHHHHhcCCCC--EEEeCChHHeeeeecccccccccccccCCcCCCceecCHHHhcCCC--------------CcC
Confidence            378999999887655  999999999985                999999999998654321              111


Q ss_pred             CCCCCCh-HHHhhhhhcCCCCCCeEEEEcCCCCCCCCCCCCCCchhhHHHHHHHHHHH-cCCcceeEccccHHHHHh-CC
Q 026264          158 SGTEENP-EFLQTGVESQLDKDAKIIVACATGGTMKPSQNLPEGQQSRSLIAAYLLVL-NGYKNVYHLEGGLYKWFK-EE  234 (241)
Q Consensus       158 ~~~~~~~-~~~~~~~~~~i~~~~~IVvyC~~G~~~~~~~~~~~~~~~rs~~aa~~L~~-~Gy~nV~~l~GG~~~W~~-~g  234 (241)
                          ..+ ++.+.+...+++++++||+||++|.              ||..+++.|++ +||+||++|+|||.+|.. .|
T Consensus       209 ----~~~~~l~~~~~~~~~~~~~~iv~yC~~G~--------------rs~~a~~~L~~~~G~~~v~~l~GG~~~W~~~~g  270 (277)
T 3aay_A          209 ----KSDEELAKLYADAGLDNSKETIAYCRIGE--------------RSSHTWFVLRELLGHQNVKNYDGSWTEYGSLVG  270 (277)
T ss_dssp             ----CCHHHHHHHHHHHTCCTTSCEEEECSSHH--------------HHHHHHHHHHTTSCCSCEEEESSHHHHHTTSTT
T ss_pred             ----CCHHHHHHHHHHcCCCCCCCEEEEcCcHH--------------HHHHHHHHHHHHcCCCcceeeCchHHHHhcCCC
Confidence                122 2323222246899999999999997              99999999996 999999999999999999 89


Q ss_pred             CCcccCC
Q 026264          235 LPEVSEE  241 (241)
Q Consensus       235 ~p~~~g~  241 (241)
                      +|+++|+
T Consensus       271 ~pv~~g~  277 (277)
T 3aay_A          271 APIELGS  277 (277)
T ss_dssp             CCCBCCC
T ss_pred             CCCccCC
Confidence            9999885

>2a2k_A M-phase inducer phosphatase 2; dual specificity, substrate trapping, active site mutant, hydrolase; 1.52A {Homo sapiens} PDB: 2ifv_A 1ymd_A 1ym9_A 1ymk_A 1yml_A 1ys0_A 1cwt_A 2ifd_A

Probab=99.83  E-value=1.4e-20  Score=155.13  Aligned_cols=109  Identities=19%  Similarity=0.311  Sum_probs=84.7

Q ss_pred             ccccccHHHHHHHhcC------CCeEEEEcCChhhhhhCCCCCCeeechhhHHhhhhhHHHHHHhhhhhccccCCCCCCh
Q 026264           91 RVRSVEAKEALRLQKE------NNFVILDVRPEAEFKEAHPPGAINVQIYRLIKEWTAWDIARRAAFAFFGIFSGTEENP  164 (241)
Q Consensus        91 ~~~~Is~~el~~~l~~------~~~~lIDvR~~~Ey~~ghIpGAinip~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~  164 (241)
                      .+..|+++++.+++++      ++++|||||++.||..||||||+|||+..+...+                        
T Consensus        22 ~~~~is~~el~~~l~~~~~~~~~~~~liDvR~~~ey~~ghIpgAinip~~~l~~~~------------------------   77 (175)
T 2a2k_A           22 DLKYISPETMVALLTGKFSNIVDKFVIVDCRYPYEYEGGHIKTAVNLPLERDAESF------------------------   77 (175)
T ss_dssp             TSCEECHHHHHHHHTTTTTTTEEEEEEEECSCHHHHHTCEETTCEECCSHHHHHHH------------------------
T ss_pred             CCceeCHHHHHHHHhcccccCCCCEEEEECCCHHHHcCCcCCCcEECChhHHHHHh------------------------
Confidence            3568999999999976      3789999999999999999999999998775421                        


Q ss_pred             HHHhhhhhcCCCCCCeEEE--EcC-CCCCCCCCCCCCCchhhHHHHHHHHHHH----------cCCcceeEccccHHHHH
Q 026264          165 EFLQTGVESQLDKDAKIIV--ACA-TGGTMKPSQNLPEGQQSRSLIAAYLLVL----------NGYKNVYHLEGGLYKWF  231 (241)
Q Consensus       165 ~~~~~~~~~~i~~~~~IVv--yC~-~G~~~~~~~~~~~~~~~rs~~aa~~L~~----------~Gy~nV~~l~GG~~~W~  231 (241)
                        +.......++++++|||  ||+ +|.              ||..++..|++          +||+||++|+||+.+|.
T Consensus        78 --~~~~~~~~~~~~~~ivvv~yC~~~g~--------------rs~~aa~~L~~~~~~~~~l~~~G~~~V~~L~GG~~~W~  141 (175)
T 2a2k_A           78 --LLKSPIAPCSLDKRVILIFHSEFSSE--------------RGPRMCRFIRERDRAVNDYPSLYYPEMYILKGGYKEFF  141 (175)
T ss_dssp             --HHSSCCCC----CEEEEEEECSSSSS--------------HHHHHHHHHHHHHHHTSSTTCCSCCCEEEETTHHHHHT
T ss_pred             --hhhhhhccccCCCCeEEEEECCCCCC--------------ccHHHHHHHHHhhhhhhhhhhcCCceEEEEcCCHHHHH
Confidence              10000112247788754  698 777              99999999986          49999999999999999


Q ss_pred             hCCCCccc
Q 026264          232 KEELPEVS  239 (241)
Q Consensus       232 ~~g~p~~~  239 (241)
                      ++|.|+.+
T Consensus       142 ~~~~~~~~  149 (175)
T 2a2k_A          142 PQHPNFCE  149 (175)
T ss_dssp             TTCGGGEE
T ss_pred             HHCccccC
Confidence            99988754

>1qb0_A Protein (M-phase inducer phosphatase 2 (CDC25B)); hydrolase, cell cycle phosphatase, dual specificity protein phosphatase; 1.91A {Homo sapiens} SCOP: c.46.1.1 PDB: 1cwr_A 1cws_A 2uzq_A

Probab=99.83  E-value=2.2e-20  Score=159.06  Aligned_cols=109  Identities=20%  Similarity=0.336  Sum_probs=88.5

Q ss_pred             ccccccHHHHHHHhcCC------CeEEEEcCChhhhhhCCCCCCeeechhhHHhhhhhHHHHHHhhhhhccccCCCCCCh
Q 026264           91 RVRSVEAKEALRLQKEN------NFVILDVRPEAEFKEAHPPGAINVQIYRLIKEWTAWDIARRAAFAFFGIFSGTEENP  164 (241)
Q Consensus        91 ~~~~Is~~el~~~l~~~------~~~lIDvR~~~Ey~~ghIpGAinip~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~  164 (241)
                      .+..|+++++.++++++      +++|||||++.||..||||||+|||+..+...+                        
T Consensus        42 ~~~~Is~~el~~~l~~~~~~~~~~~~lIDvR~~~Ey~~gHIpGAinip~~~l~~~~------------------------   97 (211)
T 1qb0_A           42 DLKYISPETMVALLTGKFSNIVDKFVIVDCRYPYEYEGGHIKTAVNLPLERDAESF------------------------   97 (211)
T ss_dssp             TSCEECHHHHHHHHTTTTTTTEEEEEEEECSCHHHHHTCEETTCEECCSHHHHHHH------------------------
T ss_pred             CCCeeCHHHHHHHHhcccccCCCCEEEEECCCHHHHccCcCCCCEECCchHHHHHh------------------------
Confidence            35689999999999763      789999999999999999999999998775421                        


Q ss_pred             HHHhhhhhcCCCCCCeE--EEEcC-CCCCCCCCCCCCCchhhHHHHHHHHHHH----------cCCcceeEccccHHHHH
Q 026264          165 EFLQTGVESQLDKDAKI--IVACA-TGGTMKPSQNLPEGQQSRSLIAAYLLVL----------NGYKNVYHLEGGLYKWF  231 (241)
Q Consensus       165 ~~~~~~~~~~i~~~~~I--VvyC~-~G~~~~~~~~~~~~~~~rs~~aa~~L~~----------~Gy~nV~~l~GG~~~W~  231 (241)
                        +........+++++|  |+||+ +|.              ||..++..|++          +||++|++|+||+.+|.
T Consensus        98 --~~~~~~l~~~~d~~ivvVvyC~~sG~--------------rs~~aa~~L~~~~~~~~~l~~~G~~~V~~L~GG~~~W~  161 (211)
T 1qb0_A           98 --LLKSPIAPCSLDKRVILIFHCEFSSE--------------RGPRMCRFIRERDRAVNDYPSLYYPEMYILKGGYKEFF  161 (211)
T ss_dssp             --HHTTTCCCSSTTSEEEEEEECSSSSS--------------HHHHHHHHHHHHHHHTSSTTCCSCCCEEEETTHHHHHT
T ss_pred             --hhhhhhccccCCCCeEEEEECCCCCc--------------cHHHHHHHHHhhhhhhhhhhhcCCCeEEEECCHHHHHH
Confidence              100001123477887  88999 887              99999999986          69999999999999999


Q ss_pred             hCCCCccc
Q 026264          232 KEELPEVS  239 (241)
Q Consensus       232 ~~g~p~~~  239 (241)
                      ++|.|+..
T Consensus       162 ~~g~~~~~  169 (211)
T 1qb0_A          162 PQHPNFCE  169 (211)
T ss_dssp             TTCGGGEE
T ss_pred             HHCccccC
Confidence            99998754

>1uar_A Rhodanese; sulfurtransferase, riken structural genomics/PROT initiative, RSGI, structural genomics, transferase; 1.70A {Thermus thermophilus} SCOP: c.46.1.2 c.46.1.2

Probab=99.83  E-value=1.2e-20  Score=166.18  Aligned_cols=120  Identities=20%  Similarity=0.258  Sum_probs=94.7

Q ss_pred             ccccHHHHHHHhcCCCeEEEEcC-ChhhhhhCCCCCCeeechhhHHhhhhhHHHHHHhhhhhccccCCCCCChHHHhhhh
Q 026264           93 RSVEAKEALRLQKENNFVILDVR-PEAEFKEAHPPGAINVQIYRLIKEWTAWDIARRAAFAFFGIFSGTEENPEFLQTGV  171 (241)
Q Consensus        93 ~~Is~~el~~~l~~~~~~lIDvR-~~~Ey~~ghIpGAinip~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  171 (241)
                      ..|+++++.+++++++++||||| ++.||..||||||+|+|+.......            ..+.+   ....+|.+.+.
T Consensus         8 ~~is~~~l~~~l~~~~~~liDvR~~~~e~~~ghIpgA~~ip~~~~~~~~------------~~~~~---~~~~~~~~~~~   72 (285)
T 1uar_A            8 VLVSTDWVQEHLEDPKVRVLEVDEDILLYDTGHIPGAQKIDWQRDFWDP------------VVRDF---ISEEEFAKLME   72 (285)
T ss_dssp             GEECHHHHHTTTTCTTEEEEEECSSTTHHHHCBCTTCEEECHHHHHBCS------------SSSSB---CCHHHHHHHHH
T ss_pred             ceEcHHHHHHhcCCCCEEEEEcCCCcchhhcCcCCCCEECCchhhccCC------------cccCC---CCHHHHHHHHH
Confidence            46999999999987789999999 6899999999999999997533210            00111   11123433322


Q ss_pred             hcCCCCCCeEEEEcCCCCCCCCCCCCCCchhhHHHHHHHHHHHcCCcceeEccccHHHHHhCCCCcccC
Q 026264          172 ESQLDKDAKIIVACATGGTMKPSQNLPEGQQSRSLIAAYLLVLNGYKNVYHLEGGLYKWFKEELPEVSE  240 (241)
Q Consensus       172 ~~~i~~~~~IVvyC~~G~~~~~~~~~~~~~~~rs~~aa~~L~~~Gy~nV~~l~GG~~~W~~~g~p~~~g  240 (241)
                      ..+++++++|||||++|.             .+|.++++.|+.+||+||++|+||+.+|.++|+|++++
T Consensus        73 ~~gi~~~~~ivvyc~~g~-------------~~s~~a~~~L~~~G~~~v~~l~GG~~~W~~~g~p~~~~  128 (285)
T 1uar_A           73 RLGISNDTTVVLYGDKNN-------------WWAAYAFWFFKYNGHKDVRLMNGGRQKWVEEGRPLTTE  128 (285)
T ss_dssp             HTTCCTTCEEEEECHHHH-------------HHHHHHHHHHHHTTCSCEEEETTHHHHHHHHTCCCBCC
T ss_pred             HcCCCCCCeEEEECCCCC-------------ccHHHHHHHHHHcCCCCeEEecCCHHHHHHCCCcccCC
Confidence            346899999999999985             26999999999999999999999999999999999875

>2vsw_A Dual specificity protein phosphatase 16; hydrolase, dual specificity phosphatase, nucleus, cytoplasm, rhodanese domain, CAsp8; 2.20A {Homo sapiens} PDB: 3tg3_A

Probab=99.82  E-value=8.1e-21  Score=152.94  Aligned_cols=118  Identities=18%  Similarity=0.253  Sum_probs=84.8

Q ss_pred             ccccHHHHHHHhcC--CCeEEEEcCChhhhhhCCCCCCeeechhhHHhhhhhHHHHHHhhhhhccccCCCCCChHHH-hh
Q 026264           93 RSVEAKEALRLQKE--NNFVILDVRPEAEFKEAHPPGAINVQIYRLIKEWTAWDIARRAAFAFFGIFSGTEENPEFL-QT  169 (241)
Q Consensus        93 ~~Is~~el~~~l~~--~~~~lIDvR~~~Ey~~ghIpGAinip~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~  169 (241)
                      ..|+++++.+++++  ++++|||||++.||..||||||+|||+..+......               .+.....+++ ..
T Consensus         4 ~~Is~~~l~~~l~~~~~~~~iiDvR~~~ey~~gHIpgAinip~~~l~~~~~~---------------~~~~~~~~ll~~~   68 (153)
T 2vsw_A            4 TQIVTERLVALLESGTEKVLLIDSRPFVEYNTSHILEAININCSKLMKRRLQ---------------QDKVLITELIQHS   68 (153)
T ss_dssp             EEECHHHHHHHHTSTTCCEEEEECSCHHHHHHCEETTCEECCCCHHHHHHHH---------------TTSSCHHHHHHHS
T ss_pred             ccccHHHHHHHHhcCCCCEEEEECCCHHHhccCccCCCeeeChHHHHHhhhh---------------cCCcCHHHhcCch
Confidence            46899999999974  579999999999999999999999999877432100               0001111221 11


Q ss_pred             h-hhcCCCCCCeEEEEcCCCCCCCCCCCCCCchhhHHHHH------HHHHHH--cCCcceeEccccHHHHHhCCCCccc
Q 026264          170 G-VESQLDKDAKIIVACATGGTMKPSQNLPEGQQSRSLIA------AYLLVL--NGYKNVYHLEGGLYKWFKEELPEVS  239 (241)
Q Consensus       170 ~-~~~~i~~~~~IVvyC~~G~~~~~~~~~~~~~~~rs~~a------a~~L~~--~Gy~nV~~l~GG~~~W~~~g~p~~~  239 (241)
                      . ...+++++++|||||++|.              ++..+      ++.|+.  .||++|++|+||+.+|.+.+.++..
T Consensus        69 ~~~~~~~~~~~~iVvyc~~g~--------------~s~~a~~~~~~~~~L~~l~~G~~~v~~L~GG~~~W~~~~~~~~~  133 (153)
T 2vsw_A           69 AKHKVDIDCSQKVVVYDQSSQ--------------DVASLSSDCFLTVLLGKLEKSFNSVHLLAGGFAEFSRCFPGLCE  133 (153)
T ss_dssp             CSSCCCCCTTSEEEEECSSCC--------------CGGGSCTTSHHHHHHHHHHHHCSCEEEETTHHHHHHHHCGGGEE
T ss_pred             hhhhhccCCCCeEEEEeCCCC--------------cccccccchHHHHHHHHHHhCCCcEEEEeChHHHHHHhChhhhc
Confidence            0 1124678999999999997              55444      567764  3999999999999999987665544

>3olh_A MST, 3-mercaptopyruvate sulfurtransferase; structural genomics, structural genomics consortium, SGC, RH fold; 2.50A {Homo sapiens}

Probab=99.82  E-value=4.4e-20  Score=164.92  Aligned_cols=122  Identities=20%  Similarity=0.294  Sum_probs=94.4

Q ss_pred             ccccHHHHHHHhcCC----CeEEEEcC---------ChhhhhhCCCCCCeeechhhHHhhhhhHHHHHHhhhhhccccCC
Q 026264           93 RSVEAKEALRLQKEN----NFVILDVR---------PEAEFKEAHPPGAINVQIYRLIKEWTAWDIARRAAFAFFGIFSG  159 (241)
Q Consensus        93 ~~Is~~el~~~l~~~----~~~lIDvR---------~~~Ey~~ghIpGAinip~~~l~~~~~~~~~~~~~~~~~~~~~~~  159 (241)
                      ..|+++++.++++++    +++|||||         ++.||..||||||+|||+..+.+....          +.+++  
T Consensus        22 ~lIs~~~l~~~l~~~~~~~~~~ilDvR~~~~~~~~~~~~ey~~gHIpGAi~i~~~~~~~~~~~----------~~~~l--   89 (302)
T 3olh_A           22 SMVSAQWVAEALRAPRAGQPLQLLDASWYLPKLGRDARREFEERHIPGAAFFDIDQCSDRTSP----------YDHML--   89 (302)
T ss_dssp             CEECHHHHHHHHHCCCSSCCEEEEECCCCCCC--CCHHHHHHHSCCTTCEECCTTTSSCSSCS----------SSSCC--
T ss_pred             CccCHHHHHHHhcCcCCCCCEEEEEeecCCCccCcccHHHHhhCcCCCCeEeCHHHhcCcCCC----------CCCCC--
Confidence            469999999999875    89999999         789999999999999999765332100          01111  


Q ss_pred             CCCChHHHhhhhhcCCCCCCeEEEEcCC--CCCCCCCCCCCCchhhHHHHHHHHHHHcCCcceeEccccHHHHHhCCCCc
Q 026264          160 TEENPEFLQTGVESQLDKDAKIIVACAT--GGTMKPSQNLPEGQQSRSLIAAYLLVLNGYKNVYHLEGGLYKWFKEELPE  237 (241)
Q Consensus       160 ~~~~~~~~~~~~~~~i~~~~~IVvyC~~--G~~~~~~~~~~~~~~~rs~~aa~~L~~~Gy~nV~~l~GG~~~W~~~g~p~  237 (241)
                       +....|.+.+...+++++++|||||++  |.             .+|.++++.|+.+||++|++|+||+.+|.++|+|+
T Consensus        90 -p~~~~~~~~~~~lgi~~~~~VVvyc~~~~g~-------------~~a~ra~~~L~~~G~~~V~~L~GG~~~W~~~g~p~  155 (302)
T 3olh_A           90 -PGAEHFAEYAGRLGVGAATHVVIYDASDQGL-------------YSAPRVWWMFRAFGHHAVSLLDGGLRHWLRQNLPL  155 (302)
T ss_dssp             -CCHHHHHHHHHHTTCCSSCEEEEECCCTTSC-------------SSHHHHHHHHHHTTCCCEEEETTHHHHHHHSCCC-
T ss_pred             -CCHHHHHHHHHHcCCCCCCEEEEEeCCCCCc-------------chHHHHHHHHHHcCCCcEEECCCCHHHHHHcCCCc
Confidence             122344444344568999999999975  33             27999999999999999999999999999999999


Q ss_pred             ccC
Q 026264          238 VSE  240 (241)
Q Consensus       238 ~~g  240 (241)
                      +++
T Consensus       156 ~~~  158 (302)
T 3olh_A          156 SSG  158 (302)
T ss_dssp             CCS
T ss_pred             ccC
Confidence            875

>3olh_A MST, 3-mercaptopyruvate sulfurtransferase; structural genomics, structural genomics consortium, SGC, RH fold; 2.50A {Homo sapiens}

Probab=99.82  E-value=1.2e-20  Score=168.67  Aligned_cols=114  Identities=21%  Similarity=0.371  Sum_probs=94.1

Q ss_pred             ccccHHHHHHHhcCCCeEEEEcCChhhh-----------hhCCCCCCeeechhhHHhhhhhHHHHHHhhhhhccccCCCC
Q 026264           93 RSVEAKEALRLQKENNFVILDVRPEAEF-----------KEAHPPGAINVQIYRLIKEWTAWDIARRAAFAFFGIFSGTE  161 (241)
Q Consensus        93 ~~Is~~el~~~l~~~~~~lIDvR~~~Ey-----------~~ghIpGAinip~~~l~~~~~~~~~~~~~~~~~~~~~~~~~  161 (241)
                      ..++.+++.+.+++++++|||||++.||           ..||||||+|||+.++.+..                  +.-
T Consensus       175 ~~i~~~e~~~~~~~~~~~liDvR~~~ef~G~~~~p~~~~~~GhIpGAiniP~~~l~~~~------------------~~~  236 (302)
T 3olh_A          175 FIKTYEDIKENLESRRFQVVDSRATGRFRGTEPEPRDGIEPGHIPGTVNIPFTDFLSQE------------------GLE  236 (302)
T ss_dssp             GEECHHHHHHHHHHCCSEEEECSCHHHHHTSSCCSSTTCCCCCCTTCEECCGGGGBCSS------------------SCB
T ss_pred             ceecHHHHHHhhcCCCcEEEecCCHHHccccccCCCcCCcCccCCCceecCHHHhcCCC------------------Ccc
Confidence            4689999999988778999999999999           78999999999998875421                  111


Q ss_pred             CCh-HHHhhhhhcCCCCCCeEEEEcCCCCCCCCCCCCCCchhhHHHHHHHHHHHcCCcceeEccccHHHHHhCCCCcc
Q 026264          162 ENP-EFLQTGVESQLDKDAKIIVACATGGTMKPSQNLPEGQQSRSLIAAYLLVLNGYKNVYHLEGGLYKWFKEELPEV  238 (241)
Q Consensus       162 ~~~-~~~~~~~~~~i~~~~~IVvyC~~G~~~~~~~~~~~~~~~rs~~aa~~L~~~Gy~nV~~l~GG~~~W~~~g~p~~  238 (241)
                      ..+ ++.+.+...+++++++||+||++|.              ||..++..|+.+||++|++|+|||.+|..+|+|..
T Consensus       237 ~~~~~l~~~~~~~~~~~~~~iv~yC~sG~--------------rs~~a~~~L~~~G~~~v~~~~Gg~~~W~~~~~P~~  300 (302)
T 3olh_A          237 KSPEEIRHLFQEKKVDLSKPLVATCGSGV--------------TACHVALGAYLCGKPDVPIYDGSWVEWYMRARPED  300 (302)
T ss_dssp             CCHHHHHHHHHHTTCCTTSCEEEECSSSS--------------TTHHHHHHHHTTTCCCCCEESSHHHHHHHHHCCCC
T ss_pred             CCHHHHHHHHHhcCCCCCCCEEEECCChH--------------HHHHHHHHHHHcCCCCeeEeCCcHHHHhhccCCCC
Confidence            222 3333323347899999999999998              99999999999999999999999999999999853

>3tp9_A Beta-lactamase and rhodanese domain protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG; 2.70A {Alicyclobacillus acidocaldarius subsp}

Probab=99.82  E-value=2.5e-20  Score=175.37  Aligned_cols=103  Identities=29%  Similarity=0.448  Sum_probs=93.7

Q ss_pred             ccccccHHHHHHHhcCCCeEEEEcCChhhhhhCCCCCCeeechhhHHhhhhhHHHHHHhhhhhccccCCCCCChHHHhhh
Q 026264           91 RVRSVEAKEALRLQKENNFVILDVRPEAEFKEAHPPGAINVQIYRLIKEWTAWDIARRAAFAFFGIFSGTEENPEFLQTG  170 (241)
Q Consensus        91 ~~~~Is~~el~~~l~~~~~~lIDvR~~~Ey~~ghIpGAinip~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  170 (241)
                      ....|+++++.+.+++++.+|||||++.||..||||||+|+|+.++..                                
T Consensus       372 ~~~~i~~~~l~~~~~~~~~~lvDvR~~~e~~~ghIpgA~~ip~~~l~~--------------------------------  419 (474)
T 3tp9_A          372 SYANVSPDEVRGALAQQGLWLLDVRNVDEWAGGHLPQAHHIPLSKLAA--------------------------------  419 (474)
T ss_dssp             CCEEECHHHHHHTTTTTCCEEEECSCHHHHHHCBCTTCEECCHHHHTT--------------------------------
T ss_pred             cccccCHHHHHHHhcCCCcEEEECCCHHHHhcCcCCCCEECCHHHHHH--------------------------------
Confidence            456799999999998888999999999999999999999999987754                                


Q ss_pred             hhcCCCCCCeEEEEcCCCCCCCCCCCCCCchhhHHHHHHHHHHHcCCcceeEccccHHHHHhCCCCccc
Q 026264          171 VESQLDKDAKIIVACATGGTMKPSQNLPEGQQSRSLIAAYLLVLNGYKNVYHLEGGLYKWFKEELPEVS  239 (241)
Q Consensus       171 ~~~~i~~~~~IVvyC~~G~~~~~~~~~~~~~~~rs~~aa~~L~~~Gy~nV~~l~GG~~~W~~~g~p~~~  239 (241)
                      ....++++++||+||++|.              ||..++..|+.+||+||++|+|||.+|.++|+|+++
T Consensus       420 ~~~~l~~~~~vvv~C~~G~--------------ra~~a~~~L~~~G~~~v~~~~Gg~~~W~~~g~p~~~  474 (474)
T 3tp9_A          420 HIHDVPRDGSVCVYCRTGG--------------RSAIAASLLRAHGVGDVRNMVGGYEAWRGKGFPVEA  474 (474)
T ss_dssp             TGGGSCSSSCEEEECSSSH--------------HHHHHHHHHHHHTCSSEEEETTHHHHHHHTTCCCBC
T ss_pred             HHhcCCCCCEEEEECCCCH--------------HHHHHHHHHHHcCCCCEEEecChHHHHHhCCCCCCC
Confidence            2245789999999999997              999999999999999999999999999999999974

>2j6p_A SB(V)-AS(V) reductase; arsenate reductase, antimonate reductase, CDC25 phosphatase, rhodanese, C-MYC epitope, oxidoreductase; HET: EPE; 2.15A {Leishmania major}

Probab=99.80  E-value=6e-20  Score=148.62  Aligned_cols=109  Identities=17%  Similarity=0.210  Sum_probs=83.2

Q ss_pred             ccccccHHHHHHHhcCC----CeEEEEcCChhhhhhCCCCCCeeechhhHHhhhhhHHHHHHhhhhhccccCCCCCChHH
Q 026264           91 RVRSVEAKEALRLQKEN----NFVILDVRPEAEFKEAHPPGAINVQIYRLIKEWTAWDIARRAAFAFFGIFSGTEENPEF  166 (241)
Q Consensus        91 ~~~~Is~~el~~~l~~~----~~~lIDvR~~~Ey~~ghIpGAinip~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  166 (241)
                      .+..|+++++.++++++    +++|||||++ ||..||||||+|||+..+....                      .+++
T Consensus         3 ~~~~Is~~el~~~l~~~~~~~~~~lIDvR~~-ey~~gHIpGAinip~~~l~~~~----------------------~~~l   59 (152)
T 2j6p_A            3 NYTYIKPEELVELLDNPDSLVKAAVIDCRDS-DRDCGFIVNSINMPTISCTEEM----------------------YEKL   59 (152)
T ss_dssp             CCEEECHHHHHHHHHSHHHHHTEEEEECCST-TGGGCBCTTCEECCTTTCCHHH----------------------HHHH
T ss_pred             CcCccCHHHHHHHHhCCCCCCCEEEEEcCcH-HhCcCcCCCcEECChhHhhHHH----------------------HHHH
Confidence            35689999999999763    8999999999 9999999999999998764310                      0112


Q ss_pred             HhhhhhcCCCCCCeEEEEc-CCCCCCCCCCCCCCchhhHHHHHH----HHHHHcCC--cceeEccccHHHHHhCCCCccc
Q 026264          167 LQTGVESQLDKDAKIIVAC-ATGGTMKPSQNLPEGQQSRSLIAA----YLLVLNGY--KNVYHLEGGLYKWFKEELPEVS  239 (241)
Q Consensus       167 ~~~~~~~~i~~~~~IVvyC-~~G~~~~~~~~~~~~~~~rs~~aa----~~L~~~Gy--~nV~~l~GG~~~W~~~g~p~~~  239 (241)
                      .+. ...  .....||+|| .+|.              |+..++    ..|.+.||  ++|++|+||+.+|..+|.++..
T Consensus        60 ~~~-l~~--~~~~~vV~yC~~sg~--------------rs~~aa~~~~~~L~~~G~~~~~v~~L~GG~~~W~~~g~~~~~  122 (152)
T 2j6p_A           60 AKT-LFE--EKKELAVFHCAQSLV--------------RAPKGANRFALAQKKLGYVLPAVYVLRGGWEAFYHMYGDVRP  122 (152)
T ss_dssp             HHH-HHH--TTCCEEEEECSSSSS--------------HHHHHHHHHHHHHHHHTCCCSEEEEETTHHHHHHHHHTTTCG
T ss_pred             HHH-hcc--cCCCEEEEEcCCCCC--------------ccHHHHHHHHHHHHHcCCCCCCEEEEcCcHHHHHHHcCCCCC
Confidence            211 111  1234678889 6877              888887    77888997  5899999999999999887653

>1yt8_A Thiosulfate sulfurtransferase; rhodanase domains, cyanide detoxification, structural genomics, PSI, protein structure initiative; 1.90A {Pseudomonas aeruginosa} SCOP: c.46.1.2 c.46.1.2 c.46.1.2 c.46.1.2

Probab=99.80  E-value=1.1e-19  Score=173.95  Aligned_cols=106  Identities=27%  Similarity=0.312  Sum_probs=92.1

Q ss_pred             ccccccHHHHHHHhcCC-CeEEEEcCChhhhhhCCCCCCeeechhhHHhhhhhHHHHHHhhhhhccccCCCCCChHHHhh
Q 026264           91 RVRSVEAKEALRLQKEN-NFVILDVRPEAEFKEAHPPGAINVQIYRLIKEWTAWDIARRAAFAFFGIFSGTEENPEFLQT  169 (241)
Q Consensus        91 ~~~~Is~~el~~~l~~~-~~~lIDvR~~~Ey~~ghIpGAinip~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  169 (241)
                      .+..|+++++.++++++ +++|||||++.||..||||||+|||+..+...                           +  
T Consensus         5 ~~~~is~~~l~~~l~~~~~~~liDvR~~~e~~~ghIpgAv~ip~~~~~~~---------------------------~--   55 (539)
T 1yt8_A            5 QIAVRTFHDIRAALLARRELALLDVREEDPFAQAHPLFAANLPLSRLELE---------------------------I--   55 (539)
T ss_dssp             -CEEECHHHHHHHHHHTCCBEEEECSCHHHHTTSBCTTCEECCGGGHHHH---------------------------H--
T ss_pred             cCcccCHHHHHHHHhCCCCeEEEECCCHHHHhcCcCCCCEECCHHHHHHH---------------------------H--
Confidence            35689999999998754 79999999999999999999999999876431                           1  


Q ss_pred             hhhcCCCCCCeEEEEcCCCCCCCCCCCCCCchhhHHHHHHHHHHHcCCcceeEccccHHHHHhCCCCcccC
Q 026264          170 GVESQLDKDAKIIVACATGGTMKPSQNLPEGQQSRSLIAAYLLVLNGYKNVYHLEGGLYKWFKEELPEVSE  240 (241)
Q Consensus       170 ~~~~~i~~~~~IVvyC~~G~~~~~~~~~~~~~~~rs~~aa~~L~~~Gy~nV~~l~GG~~~W~~~g~p~~~g  240 (241)
                       .....+++++|||||++|.              +|.++++.|+.+||+||++|+||+.+|.++|+|++++
T Consensus        56 -~~l~~~~~~~iVvyc~~g~--------------~s~~a~~~L~~~G~~~V~~L~GG~~~W~~~g~p~~~~  111 (539)
T 1yt8_A           56 -HARVPRRDTPITVYDDGEG--------------LAPVAAQRLHDLGYSDVALLDGGLSGWRNAGGELFRD  111 (539)
T ss_dssp             -HHHSCCTTSCEEEECSSSS--------------HHHHHHHHHHHTTCSSEEEETTHHHHHHHTTCCCBCS
T ss_pred             -HhhCCCCCCeEEEEECCCC--------------hHHHHHHHHHHcCCCceEEeCCCHHHHHhcCCCcccC
Confidence             1123468899999999987              9999999999999999999999999999999999875

>2eg4_A Probable thiosulfate sulfurtransferase; structural genomics, NPPSFA, national Pro protein structural and functional analyses; 1.70A {Thermus thermophilus} PDB: 2eg3_A

Probab=99.80  E-value=7e-20  Score=156.89  Aligned_cols=100  Identities=28%  Similarity=0.456  Sum_probs=85.7

Q ss_pred             ccccHHHHHHHhcCCCeEEEEcCChhhhhh----------CCCCCCeeechhhHHhhhhhHHHHHHhhhhhccccCCCCC
Q 026264           93 RSVEAKEALRLQKENNFVILDVRPEAEFKE----------AHPPGAINVQIYRLIKEWTAWDIARRAAFAFFGIFSGTEE  162 (241)
Q Consensus        93 ~~Is~~el~~~l~~~~~~lIDvR~~~Ey~~----------ghIpGAinip~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~  162 (241)
                      ..|+++++.+     +++|||||++.||..          ||||||+|+|+..+.+..                      
T Consensus       121 ~~i~~~e~~~-----~~~liDvR~~~e~~~~~~~~~~~~~ghIpgA~~ip~~~~~~~~----------------------  173 (230)
T 2eg4_A          121 WLLTADEAAR-----HPLLLDVRSPEEFQGKVHPPCCPRGGRIPGSKNAPLELFLSPE----------------------  173 (230)
T ss_dssp             GBCCHHHHHT-----CSCEEECSCHHHHTTSCCCTTSSSCCBCTTCEECCGGGGGCCT----------------------
T ss_pred             ceeCHHHHhh-----CCeEEeCCCHHHcCcccCCCCCccCCCCCCcEEcCHHHhCChH----------------------
Confidence            3588888876     688999999999999          999999999998875420                      


Q ss_pred             ChHHHhhhhhcCCCCCCeEEEEcCCCCCCCCCCCCCCchhhHHHHHHHHHHHcCCcceeEccccHHHHHhCCCCccc
Q 026264          163 NPEFLQTGVESQLDKDAKIIVACATGGTMKPSQNLPEGQQSRSLIAAYLLVLNGYKNVYHLEGGLYKWFKEELPEVS  239 (241)
Q Consensus       163 ~~~~~~~~~~~~i~~~~~IVvyC~~G~~~~~~~~~~~~~~~rs~~aa~~L~~~Gy~nV~~l~GG~~~W~~~g~p~~~  239 (241)
                        +.++   ..+++++++||+||++|.              ||..++..|+++| .||++|+|||.+|...|+|+++
T Consensus       174 --e~~~---~~~~~~~~~iv~~C~~G~--------------rs~~a~~~L~~~G-~~v~~~~Gg~~~W~~~g~p~~~  230 (230)
T 2eg4_A          174 --GLLE---RLGLQPGQEVGVYCHSGA--------------RSAVAFFVLRSLG-VRARNYLGSMHEWLQEGLPTEP  230 (230)
T ss_dssp             --THHH---HHTCCTTCEEEEECSSSH--------------HHHHHHHHHHHTT-CEEEECSSHHHHHHHTTCCCBC
T ss_pred             --HHHH---hcCCCCCCCEEEEcCChH--------------HHHHHHHHHHHcC-CCcEEecCcHHHHhhcCCCCCC
Confidence              1111   236889999999999997              9999999999999 8999999999999999999874

>1yt8_A Thiosulfate sulfurtransferase; rhodanase domains, cyanide detoxification, structural genomics, PSI, protein structure initiative; 1.90A {Pseudomonas aeruginosa} SCOP: c.46.1.2 c.46.1.2 c.46.1.2 c.46.1.2

Probab=99.79  E-value=1.3e-19  Score=173.57  Aligned_cols=106  Identities=22%  Similarity=0.322  Sum_probs=95.0

Q ss_pred             hccccccHHHHHHHhcCCCeEEEEcCChhhhhhCCCCCCeeechhhHHhhhhhHHHHHHhhhhhccccCCCCCChHHHhh
Q 026264           90 KRVRSVEAKEALRLQKENNFVILDVRPEAEFKEAHPPGAINVQIYRLIKEWTAWDIARRAAFAFFGIFSGTEENPEFLQT  169 (241)
Q Consensus        90 ~~~~~Is~~el~~~l~~~~~~lIDvR~~~Ey~~ghIpGAinip~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  169 (241)
                      ..+..|+++++.+++++++.+|||||++.||..||||||+|+|..++...                              
T Consensus       374 ~~~~~i~~~~l~~~l~~~~~~liDvR~~~e~~~ghIpgA~~ip~~~l~~~------------------------------  423 (539)
T 1yt8_A          374 PRADTIDPTTLADWLGEPGTRVLDFTASANYAKRHIPGAAWVLRSQLKQA------------------------------  423 (539)
T ss_dssp             CCCCEECHHHHHHHTTSTTEEEEECSCHHHHHHCBCTTCEECCGGGHHHH------------------------------
T ss_pred             CcCCccCHHHHHHHhcCCCeEEEEeCCHHHhhcCcCCCchhCCHHHHHHH------------------------------
Confidence            34578999999999988889999999999999999999999999876542                              


Q ss_pred             hhhcCCCCCCeEEEEcCCCCCCCCCCCCCCchhhHHHHHHHHHHHcCCcceeEccccHHHHHhCCCCcccCC
Q 026264          170 GVESQLDKDAKIIVACATGGTMKPSQNLPEGQQSRSLIAAYLLVLNGYKNVYHLEGGLYKWFKEELPEVSEE  241 (241)
Q Consensus       170 ~~~~~i~~~~~IVvyC~~G~~~~~~~~~~~~~~~rs~~aa~~L~~~Gy~nV~~l~GG~~~W~~~g~p~~~g~  241 (241)
                        ...++++++|||||.+|.              ||..++..|+.+||++|++|+||+.+|.++|+|+++++
T Consensus       424 --l~~l~~~~~ivv~C~sG~--------------rs~~aa~~L~~~G~~~v~~l~GG~~~W~~~g~pv~~~~  479 (539)
T 1yt8_A          424 --LERLGTAERYVLTCGSSL--------------LARFAVAEVQALSGKPVFLLDGGTSAWVAAGLPTEDGE  479 (539)
T ss_dssp             --HHHHCCCSEEEEECSSSH--------------HHHHHHHHHHHHHCSCEEEETTHHHHHHHTTCCCBCSS
T ss_pred             --HHhCCCCCeEEEEeCCCh--------------HHHHHHHHHHHcCCCCEEEeCCcHHHHHhCCCCcccCC
Confidence              123588899999999997              99999999999999999999999999999999998863

>3op3_A M-phase inducer phosphatase 3; structural genomics, structural genomics consortium, SGC, Al alpha sandwich, kinase, cytosol, hydrolase; 2.63A {Homo sapiens}

Probab=99.79  E-value=1.8e-19  Score=154.55  Aligned_cols=106  Identities=24%  Similarity=0.379  Sum_probs=81.7

Q ss_pred             ccccccHHHHHHHhcCC------CeEEEEcCChhhhhhCCCCCCeeechhhHHhhhhhHHHHHHhhhhhccccCCCCCCh
Q 026264           91 RVRSVEAKEALRLQKEN------NFVILDVRPEAEFKEAHPPGAINVQIYRLIKEWTAWDIARRAAFAFFGIFSGTEENP  164 (241)
Q Consensus        91 ~~~~Is~~el~~~l~~~------~~~lIDvR~~~Ey~~ghIpGAinip~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~  164 (241)
                      .++.|+++++.++++.+      +++|||||++.||..||||||+|||+.+...+.                        
T Consensus        55 ~~~~Is~~eL~~~l~~~~~~~~~~~~lIDVR~~~Ey~~GHIpGAinIP~~~~l~~~------------------------  110 (216)
T 3op3_A           55 DLKYVNPETVAALLSGKFQGLIEKFYVIDCRYPYEYLGGHIQGALNLYSQEELFNF------------------------  110 (216)
T ss_dssp             SSEEECHHHHHHHHTTTTTTTEEEEEEEECSCHHHHHTSEETTCEECCSHHHHHHH------------------------
T ss_pred             CCCEeCHHHHHHHHhCCCccccCCEEEEEeCcHHHHhcCCccCCEECChHHHHHHH------------------------
Confidence            46789999999999875      689999999999999999999999997633210                        


Q ss_pred             HHHhhhhhcCCCCCC--eEEEEcC-CCCCCCCCCCCCCchhhHHHHHHHHHHHc----------CCcceeEccccHHHHH
Q 026264          165 EFLQTGVESQLDKDA--KIIVACA-TGGTMKPSQNLPEGQQSRSLIAAYLLVLN----------GYKNVYHLEGGLYKWF  231 (241)
Q Consensus       165 ~~~~~~~~~~i~~~~--~IVvyC~-~G~~~~~~~~~~~~~~~rs~~aa~~L~~~----------Gy~nV~~l~GG~~~W~  231 (241)
                       +.+. .....++++  .|||||. +|.              ||..++..|+..          ||++|++|+||+.+|.
T Consensus       111 -l~~~-~~~~~~~~k~~~VVvyC~~SG~--------------Rs~~aa~~L~~~~~~~~~y~~lGf~~V~~L~GG~~aW~  174 (216)
T 3op3_A          111 -FLKK-PIVPLDTQKRIIIVFHCEFSSE--------------RGPRMCRCLREEDRSLNQYPALYYPELYILKGGYRDFF  174 (216)
T ss_dssp             -HTSS-CCCCSSTTSEEEEEEECCC--C--------------CHHHHHHHHHHHHHHTSSTTCCSCCCEEEETTHHHHHT
T ss_pred             -Hhhc-cccccccCCCCEEEEEeCCCCh--------------HHHHHHHHHHHcCcccccccccCCCcEEEECCcHHHHH
Confidence             0000 001122344  4999999 887              999999999987          8999999999999999


Q ss_pred             hCCCC
Q 026264          232 KEELP  236 (241)
Q Consensus       232 ~~g~p  236 (241)
                      +....
T Consensus       175 ~~~~~  179 (216)
T 3op3_A          175 PEYME  179 (216)
T ss_dssp             TTCGG
T ss_pred             HhCcc
Confidence            87443

>3f4a_A Uncharacterized protein YGR203W; protein phosphatase, rhodanese-like family, structural genomics, PSI-2, protein structure initiative; HET: MSE; 1.80A {Saccharomyces cerevisiae} PDB: 3fs5_A*

Probab=99.79  E-value=8.2e-20  Score=150.80  Aligned_cols=115  Identities=22%  Similarity=0.292  Sum_probs=84.7

Q ss_pred             hccccccHHHHHHHhcCC-------CeEEEEcCChhhhhhCCCCCCeeechhhHHhhhhhHHHHHHhhhhhccccCCCCC
Q 026264           90 KRVRSVEAKEALRLQKEN-------NFVILDVRPEAEFKEAHPPGAINVQIYRLIKEWTAWDIARRAAFAFFGIFSGTEE  162 (241)
Q Consensus        90 ~~~~~Is~~el~~~l~~~-------~~~lIDvR~~~Ey~~ghIpGAinip~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~  162 (241)
                      ..++.|+++++.++++++       +++|||||+ .||..||||||+|||+..+......                    
T Consensus        28 ~~~~~Is~~eL~~~l~~~~~~~~~~~~~iIDVR~-~Ey~~GHIpGAiniP~~~l~~~~~~--------------------   86 (169)
T 3f4a_A           28 TNVKYLDPTELHRWMQEGHTTTLREPFQVVDVRG-SDYMGGHIKDGWHYAYSRLKQDPEY--------------------   86 (169)
T ss_dssp             CSEEEECHHHHHHHHHHTSCTTTCCCEEEEECCS-TTCTTCEETTCEECCHHHHHHCHHH--------------------
T ss_pred             CCCcEeCHHHHHHHHhcCCccCcCCCEEEEECCc-hHHccCcCCCCEECCHHHhhccccc--------------------
Confidence            346789999999998753       499999999 9999999999999999987653100                    


Q ss_pred             ChHHHhhhhhcCC--CCCCeEEEEcCCCCCCCCCCCCCCchhhHHHHHHHHHHH----cC--CcceeEccccHHHHHhCC
Q 026264          163 NPEFLQTGVESQL--DKDAKIIVACATGGTMKPSQNLPEGQQSRSLIAAYLLVL----NG--YKNVYHLEGGLYKWFKEE  234 (241)
Q Consensus       163 ~~~~~~~~~~~~i--~~~~~IVvyC~~G~~~~~~~~~~~~~~~rs~~aa~~L~~----~G--y~nV~~l~GG~~~W~~~g  234 (241)
                      .+++.+.+....+  ..+++|||||.+|.             .|+..++.+|.+    .|  |.+|++|+||+.+|.+++
T Consensus        87 l~~l~~~~~~~~~~~~~~~~IVvyC~sG~-------------~Rs~~aa~~l~~~L~~~G~~~~~V~~L~GG~~aW~~~~  153 (169)
T 3f4a_A           87 LRELKHRLLEKQADGRGALNVIFHCMLSQ-------------QRGPSAAMLLLRSLDTAELSRCRLWVLRGGFSRWQSVY  153 (169)
T ss_dssp             HHHHHHHHHHHHHTSSSCEEEEEECSSSS-------------SHHHHHHHHHHHTCCHHHHTTEEEEEETTHHHHHHHHH
T ss_pred             HHHHHHHHHhhcccccCCCeEEEEeCCCC-------------CcHHHHHHHHHHHHHHcCCCCCCEEEECCCHHHHHHHc
Confidence            1111111001111  22479999999984             299988877765    36  578999999999999998


Q ss_pred             CCcc
Q 026264          235 LPEV  238 (241)
Q Consensus       235 ~p~~  238 (241)
                      .|.+
T Consensus       154 ~~~~  157 (169)
T 3f4a_A          154 GDDE  157 (169)
T ss_dssp             TTCT
T ss_pred             CCcc
Confidence            7764

>2wlr_A Putative thiosulfate sulfurtransferase YNJE; rhodanese domains; HET: EPE; 1.45A {Escherichia coli} PDB: 2wlx_A* 3ipo_A* 3ipp_A

Probab=99.79  E-value=1.9e-19  Score=167.54  Aligned_cols=124  Identities=19%  Similarity=0.248  Sum_probs=94.2

Q ss_pred             ccccHHHHHHHhcCCCeEEEEcCChhhh-----------hhCCCCCCeeechhhHHhhhhhHHHHHHhhhhhccccCCCC
Q 026264           93 RSVEAKEALRLQKENNFVILDVRPEAEF-----------KEAHPPGAINVQIYRLIKEWTAWDIARRAAFAFFGIFSGTE  161 (241)
Q Consensus        93 ~~Is~~el~~~l~~~~~~lIDvR~~~Ey-----------~~ghIpGAinip~~~l~~~~~~~~~~~~~~~~~~~~~~~~~  161 (241)
                      ..|+.+++.++++.++.+|||||++.||           ..||||||+|+|+......+..+       +.-    .+.-
T Consensus       272 ~~i~~~e~~~~l~~~~~~liDvR~~~e~~G~~~~~~~~~~~GhIpgAi~ip~~~~~~~~~~~-------~~~----~~~~  340 (423)
T 2wlr_A          272 LMLDMEQARGLLHRQDASLVSIRSWPEFIGTTSGYSYIKPKGEIAGARWGHAGSDSTHMEDF-------HNP----DGTM  340 (423)
T ss_dssp             GEECHHHHHTTTTCSSEEEEECSCHHHHHTSCCSSTTCCCCSEETTCEECCCCSSTTCCGGG-------BCT----TSSB
T ss_pred             heecHHHHHHHhcCCCceEEecCchhheeeeccCCCCCCcCCCCCCccccccccccccHHHH-------cCC----CCcC
Confidence            3589999999888778999999999999           89999999999986210000000       000    0111


Q ss_pred             CCh-HHHhhhhhcCCCCCCeEEEEcCCCCCCCCCCCCCCchhhHHHHHHHHHHHcCCcceeEccccHHHHHh-CCCCccc
Q 026264          162 ENP-EFLQTGVESQLDKDAKIIVACATGGTMKPSQNLPEGQQSRSLIAAYLLVLNGYKNVYHLEGGLYKWFK-EELPEVS  239 (241)
Q Consensus       162 ~~~-~~~~~~~~~~i~~~~~IVvyC~~G~~~~~~~~~~~~~~~rs~~aa~~L~~~Gy~nV~~l~GG~~~W~~-~g~p~~~  239 (241)
                      ..+ ++.+.+...+++++++||+||++|.              ||..++..|+.+||+||++|+|||.+|.. .|+|+++
T Consensus       341 ~~~~~l~~~~~~~~~~~~~~ivvyC~sG~--------------rs~~aa~~L~~~G~~~v~~~~GG~~~W~~~~~~Pv~~  406 (423)
T 2wlr_A          341 RSADDITAMWKAWNIKPEQQVSFYCGTGW--------------RASETFMYARAMGWKNVSVYDGGWYEWSSDPKNPVAT  406 (423)
T ss_dssp             CCHHHHHHHHHTTTCCTTSEEEEECSSSH--------------HHHHHHHHHHHTTCSSEEEESSHHHHHTTSTTSCEEC
T ss_pred             CCHHHHHHHHHHcCCCCCCcEEEECCcHH--------------HHHHHHHHHHHcCCCCcceeCccHHHHhcCCCCCccc
Confidence            222 3333322257889999999999997              99999999999999999999999999998 8999998


Q ss_pred             CC
Q 026264          240 EE  241 (241)
Q Consensus       240 g~  241 (241)
                      |+
T Consensus       407 ~~  408 (423)
T 2wlr_A          407 GE  408 (423)
T ss_dssp             SS
T ss_pred             CC
Confidence            74

>2wlr_A Putative thiosulfate sulfurtransferase YNJE; rhodanese domains; HET: EPE; 1.45A {Escherichia coli} PDB: 2wlx_A* 3ipo_A* 3ipp_A

Probab=99.78  E-value=2.9e-19  Score=166.28  Aligned_cols=118  Identities=17%  Similarity=0.207  Sum_probs=95.1

Q ss_pred             ccccHHHHHHHhc--------CCCeEEEEcC--ChhhhhhCCCCCCeeechhhHHhhhhhHHHHHHhhhhhccccCCCCC
Q 026264           93 RSVEAKEALRLQK--------ENNFVILDVR--PEAEFKEAHPPGAINVQIYRLIKEWTAWDIARRAAFAFFGIFSGTEE  162 (241)
Q Consensus        93 ~~Is~~el~~~l~--------~~~~~lIDvR--~~~Ey~~ghIpGAinip~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~  162 (241)
                      ..|+++++.++++        .++++|||||  ++.||..||||||+|+|+..+....             .+.+   ..
T Consensus       124 ~~i~~~~l~~~~~~~~~~~~~~~~~~liDvR~~~~~e~~~ghIpgA~nip~~~~~~~~-------------~~~~---~~  187 (423)
T 2wlr_A          124 QLVYPQWLHDLQQGKEVTAKPAGDWKVIEAAWGAPKLYLISHIPGADYIDTNEVESEP-------------LWNK---VS  187 (423)
T ss_dssp             GEECHHHHHHHHTTCCCTTCCSSCEEEEEEESSSCSHHHHCBCTTCEEEEGGGTEETT-------------TTEE---CC
T ss_pred             cccCHHHHHHHhhccccccccCCCeEEEEecCCCchhhccCcCCCcEEcCHHHhccCC-------------CCCC---CC
Confidence            4688899988886        3478999999  9999999999999999998764310             0111   11


Q ss_pred             ChHHHhhhhhcCCCCCCeEEEEcCCCCCCCCCCCCCCchhhHHHHHHHHHHHcCCcceeEccccHHHHHhCCCCcccC
Q 026264          163 NPEFLQTGVESQLDKDAKIIVACATGGTMKPSQNLPEGQQSRSLIAAYLLVLNGYKNVYHLEGGLYKWFKEELPEVSE  240 (241)
Q Consensus       163 ~~~~~~~~~~~~i~~~~~IVvyC~~G~~~~~~~~~~~~~~~rs~~aa~~L~~~Gy~nV~~l~GG~~~W~~~g~p~~~g  240 (241)
                      ..++.+.+...+++++++||+||++|.              +|..+++.|+.+||++|++|+|||.+|.+.|+|+++|
T Consensus       188 ~~~l~~~~~~~gi~~~~~ivvyC~~G~--------------~a~~~~~~L~~~G~~~v~~l~Gg~~~W~~~g~pv~~g  251 (423)
T 2wlr_A          188 DEQLKAMLAKHGIRHDTTVILYGRDVY--------------AAARVAQIMLYAGVKDVRLLDGGWQTWSDAGLPVERG  251 (423)
T ss_dssp             HHHHHHHHHHTTCCTTSEEEEECSSHH--------------HHHHHHHHHHHHTCSCEEEETTTHHHHHHTTCCCBCS
T ss_pred             HHHHHHHHHHcCCCCCCeEEEECCCch--------------HHHHHHHHHHHcCCCCeEEECCCHHHHhhCCCCcccC
Confidence            233333323357899999999999886              9999999999999999999999999999999999886

>1okg_A Possible 3-mercaptopyruvate sulfurtransferase; rhodanese, prolyl isomerase, catalytic triad, serine protease, leishmania pyruvate; HET: CSR; 2.10A {Leishmania major} SCOP: c.46.1.2 c.46.1.2 d.26.1.3

Probab=99.78  E-value=2e-19  Score=165.46  Aligned_cols=120  Identities=17%  Similarity=0.161  Sum_probs=92.4

Q ss_pred             ccccHHHHHHHhcCCCeEEEEcCC--------hhhhhhCCCCCCeeechhh-HHhhhhhHHHHHHhhhhhccccCCCCCC
Q 026264           93 RSVEAKEALRLQKENNFVILDVRP--------EAEFKEAHPPGAINVQIYR-LIKEWTAWDIARRAAFAFFGIFSGTEEN  163 (241)
Q Consensus        93 ~~Is~~el~~~l~~~~~~lIDvR~--------~~Ey~~ghIpGAinip~~~-l~~~~~~~~~~~~~~~~~~~~~~~~~~~  163 (241)
                      ..|+++++.+++++  ++|||||+        +.||..||||||+|||+.. +.+...           -.......+..
T Consensus        14 ~~Is~~el~~~l~~--~~iIDvR~~~~~~~~~~~ey~~gHIpGAi~ip~~~~l~~~~~-----------~~~~~~~lp~~   80 (373)
T 1okg_A           14 VFLDPSEVADHLAE--YRIVDCRYSLKIKDHGSIQYAKEHVKSAIRADVDTNLSKLVP-----------TSTARHPLPPX   80 (373)
T ss_dssp             CEECHHHHTTCGGG--SEEEECCCCSSSTTTTTTHHHHCEETTCEECCTTTTSCCCCT-----------TCCCSSCCCCH
T ss_pred             cEEcHHHHHHHcCC--cEEEEecCCccccccchhHHhhCcCCCCEEeCchhhhhcccc-----------cCCccccCCCH
Confidence            57999999998875  99999998        6999999999999999986 432100           00001111223


Q ss_pred             hHHHhhhhhcCCCCCCeEEEEc-CCCCCCCCCCCCCCchhhHHH-HHHHHHHHcCCcceeEccccHHHHHhCCCCcccC
Q 026264          164 PEFLQTGVESQLDKDAKIIVAC-ATGGTMKPSQNLPEGQQSRSL-IAAYLLVLNGYKNVYHLEGGLYKWFKEELPEVSE  240 (241)
Q Consensus       164 ~~~~~~~~~~~i~~~~~IVvyC-~~G~~~~~~~~~~~~~~~rs~-~aa~~L~~~Gy~nV~~l~GG~~~W~~~g~p~~~g  240 (241)
                      .+|.+.+...+++++++||||| ..|.              ++. ++++.|+.+|| ||++|+||+.+|.++|+|++++
T Consensus        81 ~~f~~~l~~~gi~~d~~VVvYc~~~G~--------------rsa~ra~~~L~~~G~-~V~~L~GG~~aW~~~g~pv~~~  144 (373)
T 1okg_A           81 AEFIDWCMANGMAGELPVLCYDDECGA--------------MGGCRLWWMLNSLGA-DAYVINGGFQACKAAGLEMESG  144 (373)
T ss_dssp             HHHHHHHHHTTCSSSSCEEEECSSTTT--------------TTHHHHHHHHHHHTC-CEEEETTTTHHHHTTTCCEECS
T ss_pred             HHHHHHHHHcCCCCCCeEEEEeCCCCc--------------hHHHHHHHHHHHcCC-eEEEeCCCHHHHHhhcCCcccC
Confidence            3454443446889999999999 6665              675 99999999999 9999999999999999999875

>3tg1_B Dual specificity protein phosphatase 10; kinase/rhodanese-like domain, docking interaction, transfera hydrolase complex; 2.71A {Homo sapiens}

Probab=99.76  E-value=1.8e-18  Score=140.54  Aligned_cols=124  Identities=17%  Similarity=0.187  Sum_probs=81.8

Q ss_pred             hccccccHHHHHHHhc--------CCCeEEEEcCChhhhhhCCCCCCeeechhhHHhhhhhHHHHHHhhhhhccccCCCC
Q 026264           90 KRVRSVEAKEALRLQK--------ENNFVILDVRPEAEFKEAHPPGAINVQIYRLIKEWTAWDIARRAAFAFFGIFSGTE  161 (241)
Q Consensus        90 ~~~~~Is~~el~~~l~--------~~~~~lIDvR~~~Ey~~ghIpGAinip~~~l~~~~~~~~~~~~~~~~~~~~~~~~~  161 (241)
                      ..+..|+++++.++++        .++.+|||||++.||..||||||+|+|+..+.....         +.     .+..
T Consensus         8 ~~~~~is~~el~~~l~~~~~~~~~~~~~~liDvR~~~e~~~ghI~ga~~i~~~~l~~~~~---------~~-----~~~~   73 (158)
T 3tg1_B            8 ASIKIIYPNDLAKKMTKCSKSHLPSQGPVIIDCRPFMEYNKSHIQGAVHINCADKISRRR---------LQ-----QGKI   73 (158)
T ss_dssp             ---CEECHHHHHHHHCC----------CEEEECSCHHHHHHCCBTTCEECCCSSHHHHHH---------HT-----TSSC
T ss_pred             CCCcEecHHHHHHHHHhcccccCCCCCEEEEEcCCHHHHHhCCCCCceeechhHHHHHhh---------hh-----cCcc
Confidence            3467899999999997        347899999999999999999999999998752110         00     0000


Q ss_pred             CChHHHhhh---hhcCCCCCCeEEEEcCCCCCCCCCCCCCCchhhHHHHHHHHHHHcCCcceeEccccHHHHHhC
Q 026264          162 ENPEFLQTG---VESQLDKDAKIIVACATGGTMKPSQNLPEGQQSRSLIAAYLLVLNGYKNVYHLEGGLYKWFKE  233 (241)
Q Consensus       162 ~~~~~~~~~---~~~~i~~~~~IVvyC~~G~~~~~~~~~~~~~~~rs~~aa~~L~~~Gy~nV~~l~GG~~~W~~~  233 (241)
                      ....++..-   ......++++|||||.+|..+...+.     ..++..++..|...|| +|++|+|||.+|.+.
T Consensus        74 ~~~~~~~~~~~~~~~~~~~~~~IVvyc~~g~~~~~~~~-----~~~s~~a~~~L~~~G~-~v~~L~GG~~~W~~~  142 (158)
T 3tg1_B           74 TVLDLISCREGKDSFKRIFSKEIIVYDENTNEPSRVMP-----SQPLHIVLESLKREGK-EPLVLKGGLSSFKQN  142 (158)
T ss_dssp             CHHHHTCCCCSSCSSTTTTTSCEEEECSCCSCTTSCCS-----SSHHHHHHHHHHTTTC-CEEEETTHHHHHTSS
T ss_pred             cHHhhcCCHHHHHHHhccCCCeEEEEECCCCcccccCc-----chHHHHHHHHHHhCCC-cEEEeCCcHHHHHHH
Confidence            000011000   00011357899999999952210000     0179999999999999 699999999999876

>1hzm_A Dual specificity protein phosphatase 6; hydrolase; NMR {Homo sapiens} SCOP: c.46.1.1

Probab=99.76  E-value=1.7e-19  Score=145.05  Aligned_cols=123  Identities=18%  Similarity=0.219  Sum_probs=78.9

Q ss_pred             cccccHHHHHHHhcCC--CeEEEEcCChhhhhhCCCCCCeeechhhHHhhhhhHHHHHHhhhhhccccCCCCCChHHHhh
Q 026264           92 VRSVEAKEALRLQKEN--NFVILDVRPEAEFKEAHPPGAINVQIYRLIKEWTAWDIARRAAFAFFGIFSGTEENPEFLQT  169 (241)
Q Consensus        92 ~~~Is~~el~~~l~~~--~~~lIDvR~~~Ey~~ghIpGAinip~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  169 (241)
                      +..|+++++.++++++  +++|||||++.||..||||||+|||+..+........     ...+.+.+    ..++..+ 
T Consensus        15 ~~~is~~~l~~~l~~~~~~~~liDvR~~~ey~~gHIpgAinip~~~~~~~~~~~~-----~~~~~~~l----~~~~~~~-   84 (154)
T 1hzm_A           15 AISKTVAWLNEQLELGNERLLLMDCRPQELYESSHIESAINVAIPGIMLRRLQKG-----NLPVRALF----TRGEDRD-   84 (154)
T ss_dssp             SSBSCCCCHHHHHHHCSSSCEEECCSTTHHHHHHTSSSCCCCCCSSHHHHTBCCS-----CCCTTTTS----TTSHHHH-
T ss_pred             ccccCHHHHHHHHhCCCCCEEEEEcCCHHHHhhccccCceEeCccHHHHhhhhcC-----cccHHHhC----CCHHHHH-
Confidence            4578889998888765  7999999999999999999999999987541000000     00000011    0111111 


Q ss_pred             hhhcCCCCCCeEEEEcCCCCCCCCCCCCCCchhhHHHHHHHHHHHc---CCcceeEccccHHHHHhC
Q 026264          170 GVESQLDKDAKIIVACATGGTMKPSQNLPEGQQSRSLIAAYLLVLN---GYKNVYHLEGGLYKWFKE  233 (241)
Q Consensus       170 ~~~~~i~~~~~IVvyC~~G~~~~~~~~~~~~~~~rs~~aa~~L~~~---Gy~nV~~l~GG~~~W~~~  233 (241)
                       ...+++++++|||||..|..+...    .|   .+..+++.|+.+   ||+ |++|+||+.+|...
T Consensus        85 -~~~~~~~~~~iVvyc~~g~~~~~~----~~---aa~~~~~~l~~l~~~G~~-v~~L~GG~~~W~~~  142 (154)
T 1hzm_A           85 -RFTRRCGTDTVVLYDESSSDWNEN----TG---GESLLGLLLKKLKDEGCR-AFYLEGGFSKFQAE  142 (154)
T ss_dssp             -HHHHSTTSSCEEECCCSSSSSCSC----SS---CCSHHHHHHHHHHHTTCC-CEECCCCHHHHHHH
T ss_pred             -HHhccCCCCeEEEEeCCCCccccc----cc---cchHHHHHHHHHHHCCCc-eEEEcChHHHHHHH
Confidence             123467889999999998721000    00   013345556654   998 99999999999875

>3ntd_A FAD-dependent pyridine nucleotide-disulphide oxidoreductase; COA, persulfide reductase, rhodanese; HET: COA FAD; 1.99A {Shewanella loihica} PDB: 3nta_A* 3nt6_A*

Probab=99.73  E-value=2.8e-18  Score=163.38  Aligned_cols=97  Identities=27%  Similarity=0.365  Sum_probs=86.1

Q ss_pred             hhccccccHHHHHHHhcCCCeEEEEcCChhhhhhCCCCCCeeechhhHHhhhhhHHHHHHhhhhhccccCCCCCChHHHh
Q 026264           89 QKRVRSVEAKEALRLQKENNFVILDVRPEAEFKEAHPPGAINVQIYRLIKEWTAWDIARRAAFAFFGIFSGTEENPEFLQ  168 (241)
Q Consensus        89 ~~~~~~Is~~el~~~l~~~~~~lIDvR~~~Ey~~ghIpGAinip~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  168 (241)
                      ...+..|+++++.++  .++++|||||++.||..||||||+|+|+.++..                              
T Consensus       469 ~~~~~~i~~~~~~~~--~~~~~~iDvR~~~e~~~~~i~ga~~ip~~~l~~------------------------------  516 (565)
T 3ntd_A          469 KGDATPIHFDQIDNL--SEDQLLLDVRNPGELQNGGLEGAVNIPVDELRD------------------------------  516 (565)
T ss_dssp             HTSCCEECTTTTTSC--CTTEEEEECSCGGGGGGCCCTTCEECCGGGTTT------------------------------
T ss_pred             ccccceeeHHHHHhC--CCCcEEEEeCCHHHHhcCCCCCcEECCHHHHHH------------------------------
Confidence            356788999998877  558999999999999999999999999987654                              


Q ss_pred             hhhhcCCCCCCeEEEEcCCCCCCCCCCCCCCchhhHHHHHHHHHHHcCCcceeEccccHHHHHhCC
Q 026264          169 TGVESQLDKDAKIIVACATGGTMKPSQNLPEGQQSRSLIAAYLLVLNGYKNVYHLEGGLYKWFKEE  234 (241)
Q Consensus       169 ~~~~~~i~~~~~IVvyC~~G~~~~~~~~~~~~~~~rs~~aa~~L~~~Gy~nV~~l~GG~~~W~~~g  234 (241)
                        ....++++++||+||++|.              ||..+++.|++.|| ||++|+||+.+|.++|
T Consensus       517 --~~~~~~~~~~iv~~c~~g~--------------rs~~a~~~l~~~G~-~v~~l~gG~~~w~~~g  565 (565)
T 3ntd_A          517 --RMHELPKDKEIIIFSQVGL--------------RGNVAYRQLVNNGY-RARNLIGGYRTYKFAS  565 (565)
T ss_dssp             --SGGGSCTTSEEEEECSSSH--------------HHHHHHHHHHHTTC-CEEEETTHHHHHHHTC
T ss_pred             --HHhhcCCcCeEEEEeCCch--------------HHHHHHHHHHHcCC-CEEEEcChHHHHHhCc
Confidence              2244789999999999987              99999999999999 9999999999999876

>3ics_A Coenzyme A-disulfide reductase; pyridine nucleotide-disulfide oxidoreductase class I, rhodan coenzyme A, flavin adenine dinucleotide; HET: FAD COA ADP; 1.94A {Bacillus anthracis} PDB: 3icr_A* 3ict_A*

Probab=99.73  E-value=4.9e-18  Score=163.09  Aligned_cols=99  Identities=27%  Similarity=0.404  Sum_probs=87.9

Q ss_pred             hhhccccccHHHHHHHhcCCCeEEEEcCChhhhhhCCCCCCeeechhhHHhhhhhHHHHHHhhhhhccccCCCCCChHHH
Q 026264           88 LQKRVRSVEAKEALRLQKENNFVILDVRPEAEFKEAHPPGAINVQIYRLIKEWTAWDIARRAAFAFFGIFSGTEENPEFL  167 (241)
Q Consensus        88 ~~~~~~~Is~~el~~~l~~~~~~lIDvR~~~Ey~~ghIpGAinip~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  167 (241)
                      ....+..|+++++.+++++ +++|||||++.||..||||||+|||+..+..                             
T Consensus       484 ~~~~~~~i~~~~~~~~~~~-~~~~iDvR~~~e~~~ghi~ga~~ip~~~l~~-----------------------------  533 (588)
T 3ics_A          484 VDGFVDTVQWHEIDRIVEN-GGYLIDVREPNELKQGMIKGSINIPLDELRD-----------------------------  533 (588)
T ss_dssp             HTTSCCEECTTTHHHHHHT-TCEEEECSCGGGGGGCBCTTEEECCHHHHTT-----------------------------
T ss_pred             cccccceecHHHHHHHhcC-CCEEEEcCCHHHHhcCCCCCCEECCHHHHHH-----------------------------
Confidence            3467889999999999865 7899999999999999999999999987654                             


Q ss_pred             hhhhhcCCCCCCeEEEEcCCCCCCCCCCCCCCchhhHHHHHHHHHHHcCCcceeEccccHHHHHhCC
Q 026264          168 QTGVESQLDKDAKIIVACATGGTMKPSQNLPEGQQSRSLIAAYLLVLNGYKNVYHLEGGLYKWFKEE  234 (241)
Q Consensus       168 ~~~~~~~i~~~~~IVvyC~~G~~~~~~~~~~~~~~~rs~~aa~~L~~~Gy~nV~~l~GG~~~W~~~g  234 (241)
                         ....++++++||+||++|.              ||..+++.|++.||+ |++|+||+.+|.+..
T Consensus       534 ---~~~~l~~~~~iv~~C~~g~--------------rs~~a~~~l~~~G~~-v~~l~GG~~~w~~~~  582 (588)
T 3ics_A          534 ---RLEEVPVDKDIYITCQLGM--------------RGYVAARMLMEKGYK-VKNVDGGFKLYGTVL  582 (588)
T ss_dssp             ---CGGGSCSSSCEEEECSSSH--------------HHHHHHHHHHHTTCC-EEEETTHHHHHHHHC
T ss_pred             ---HHhhCCCCCeEEEECCCCc--------------HHHHHHHHHHHcCCc-EEEEcchHHHHHhhh
Confidence               2345788999999999987              999999999999998 999999999998763

>1whb_A KIAA0055; deubiqutinating enzyme, UBPY, structural genomics, riken structural genomics/proteomics initiative, RSGI, hydrolase; NMR {Homo sapiens} SCOP: c.46.1.4

Probab=99.72  E-value=1e-17  Score=136.04  Aligned_cols=123  Identities=14%  Similarity=0.157  Sum_probs=78.7

Q ss_pred             ccccccHHHHHHHhcCC--CeEEEEcCChhhhhhCCCCCCeeechhhHHhhhhhHHHHHHhhhhhccccCCCCCChHHHh
Q 026264           91 RVRSVEAKEALRLQKEN--NFVILDVRPEAEFKEAHPPGAINVQIYRLIKEWTAWDIARRAAFAFFGIFSGTEENPEFLQ  168 (241)
Q Consensus        91 ~~~~Is~~el~~~l~~~--~~~lIDvR~~~Ey~~ghIpGAinip~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  168 (241)
                      ....|+++++.++++.+  +++|||||++.||..||||||+|||+..+........+..        .+.  ....+.. 
T Consensus        13 ~~~~i~~~~l~~~l~~~~~~~~liDvR~~~ey~~gHI~gainip~~~~~~~~~~~~l~~--------~lp--~~~~~~~-   81 (157)
T 1whb_A           13 EKGAITAKELYTMMTDKNISLIIMDARRMQDYQDSCILHSLSVPEEAISPGVTASWIEA--------HLP--DDSKDTW-   81 (157)
T ss_dssp             CCSEECHHHHHHHHTCSSSCEEEEEESCHHHHHHCCBTTCEEECSSSCCTTCCHHHHHH--------SCC--TTHHHHH-
T ss_pred             cCCccCHHHHHHHHhcCCCCeEEEECCCHHHHHhccccCCcccCHHHccCCCcHHHHHH--------HCC--hHHHHHH-
Confidence            34679999999999876  8999999999999999999999999876532110001100        000  0000111 


Q ss_pred             hhhhcCCCCCCeEEEEcCCCCCCCCCCCCCCchhhHHHHHHHHHHH----c----CCc-ceeEccccHHHHHhCCCCccc
Q 026264          169 TGVESQLDKDAKIIVACATGGTMKPSQNLPEGQQSRSLIAAYLLVL----N----GYK-NVYHLEGGLYKWFKEELPEVS  239 (241)
Q Consensus       169 ~~~~~~i~~~~~IVvyC~~G~~~~~~~~~~~~~~~rs~~aa~~L~~----~----Gy~-nV~~l~GG~~~W~~~g~p~~~  239 (241)
                          ....+...|||||..+...          ..++..+++.|.+    .    ||. +|++|+|||.+|.+. +|...
T Consensus        82 ----~~~~~~~~VVvy~~~~~~~----------~~~a~~~~~~L~~~L~~~~~~~~~~~~V~~L~GG~~aW~~~-~p~~~  146 (157)
T 1whb_A           82 ----KKRGNVEYVVLLDWFSSAK----------DLQIGTTLRSLKDALFKWESKTVLRNEPLVLEGGYENWLLC-YPQYT  146 (157)
T ss_dssp             ----HGGGTSSEEEEECSSCCGG----------GCCTTCHHHHHHHTTTTTCSSCCCSSCCEEESSCHHHHHHH-CGGGB
T ss_pred             ----HhcCCCCEEEEECCCCCcc----------ccccccHHHHHHHHHHHhccccccCCCeEEEcchHHHHHHH-Chhhh
Confidence                1122345699999887510          0023445566652    2    454 499999999999985 87654

>2gwf_A Ubiquitin carboxyl-terminal hydrolase 8; protein-protein complex, E3 ligase, protein ubiquitination, hydrolase, protease, UBL conjugation pathway; 2.30A {Homo sapiens} SCOP: c.46.1.4

Probab=99.72  E-value=1.8e-17  Score=134.87  Aligned_cols=124  Identities=15%  Similarity=0.145  Sum_probs=78.2

Q ss_pred             hccccccHHHHHHHhcCC--CeEEEEcCChhhhhhCCCCCCeeechhhHHhhhhhHHHHHHhhhhhccccCCCCCChHHH
Q 026264           90 KRVRSVEAKEALRLQKEN--NFVILDVRPEAEFKEAHPPGAINVQIYRLIKEWTAWDIARRAAFAFFGIFSGTEENPEFL  167 (241)
Q Consensus        90 ~~~~~Is~~el~~~l~~~--~~~lIDvR~~~Ey~~ghIpGAinip~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  167 (241)
                      .....|+++++.++++++  +++|||||++.||..||||||+|||+..+........+..              ..++..
T Consensus        17 ~~~~~is~~~l~~~l~~~~~~~~liDvR~~~ey~~gHI~gAinip~~~l~~~~~~~~l~~--------------~lp~~~   82 (157)
T 2gwf_A           17 RGSGAITAKELYTMMTDKNISLIIMDARRMQDYQDSCILHSLSVPEEAISPGVTASWIEA--------------HLPDDS   82 (157)
T ss_dssp             --CCEECHHHHHHHHHSTTSCEEEEECSCHHHHHHSCBTTCEECCGGGCCTTCCHHHHHH--------------TSCHHH
T ss_pred             CCCCccCHHHHHHHHhcCCCCeEEEECCCHHHHHhcCccCCcccCHHHcCCCCcHHHHHH--------------HcCHHH
Confidence            345689999999999876  8999999999999999999999999976532110001100              011111


Q ss_pred             hhhhhcCCCCCCeEEEEcCCCCCCCCCCCCCCchhhHHHHHHHHHH----Hc----CCc-ceeEccccHHHHHhCCCCcc
Q 026264          168 QTGVESQLDKDAKIIVACATGGTMKPSQNLPEGQQSRSLIAAYLLV----LN----GYK-NVYHLEGGLYKWFKEELPEV  238 (241)
Q Consensus       168 ~~~~~~~i~~~~~IVvyC~~G~~~~~~~~~~~~~~~rs~~aa~~L~----~~----Gy~-nV~~l~GG~~~W~~~g~p~~  238 (241)
                      +. ......+...||+||..|....          .++..+++.|.    +.    ||. +|++|+|||.+|.+. +|..
T Consensus        83 ~~-l~~~~~~~~~VVvy~~~~~~~~----------~~a~~~l~~L~~~L~~~~~~~~~~~~V~~L~GG~~aW~~~-~p~~  150 (157)
T 2gwf_A           83 KD-TWKKRGNVEYVVLLDWFSSAKD----------LQIGTTLRSLKDALFKWESKTVLRNEPLVLEGGYENWLLC-YPQY  150 (157)
T ss_dssp             HH-HHHTTTTSSEEEEECSSCCGGG----------CCTTCHHHHHHHHHHTSCCSSCCSSCCEEETTHHHHHHHH-CGGG
T ss_pred             HH-HHHhcCCCCEEEEEcCCCCccc----------cCcccHHHHHHHHHHhhccccccCCceEEEccHHHHHHHH-Chhh
Confidence            11 1122334556999998875100          02233445544    32    454 499999999999984 7764


Q ss_pred             c
Q 026264          239 S  239 (241)
Q Consensus       239 ~  239 (241)
                      .
T Consensus       151 ~  151 (157)
T 2gwf_A          151 T  151 (157)
T ss_dssp             B
T ss_pred             c
Confidence            3

>3utn_X Thiosulfate sulfurtransferase TUM1; rhodanese-like domain; 1.90A {Saccharomyces cerevisiae}

Probab=99.71  E-value=2.7e-17  Score=149.02  Aligned_cols=122  Identities=19%  Similarity=0.230  Sum_probs=96.6

Q ss_pred             ccccHHHHHHHhcCC---CeEEEEcC---------Chhhh-hhCCCCCCeeechhhHHhhhhhHHHHHHhhhhhccccCC
Q 026264           93 RSVEAKEALRLQKEN---NFVILDVR---------PEAEF-KEAHPPGAINVQIYRLIKEWTAWDIARRAAFAFFGIFSG  159 (241)
Q Consensus        93 ~~Is~~el~~~l~~~---~~~lIDvR---------~~~Ey-~~ghIpGAinip~~~l~~~~~~~~~~~~~~~~~~~~~~~  159 (241)
                      +.|+++++.++++++   .+++||++         ...|| ++||||||++++++.+.+...          .+.+++  
T Consensus        28 ~LIsp~~l~~ll~~~~~~rvv~lDasw~lP~~~r~~~~E~~~~~HIPGAv~~Dld~~~d~~~----------~~ph~L--   95 (327)
T 3utn_X           28 DLISPKAFVKLVASEKVHRIVPVDATWYLPSWKLDNKVDFLTKPRIPNSIFFDIDAISDKKS----------PYPHMF--   95 (327)
T ss_dssp             EEECHHHHHHHHHHCSSSCEEEEECCCCCGGGCCCHHHHHHHSCBCTTCEECCTTTSSCTTS----------SSTTCC--
T ss_pred             cccCHHHHHHHHhCCCCCcEEEEEecCCCCCCCCCHHHHHHhhCcCCCCeeeChHHhcCCCC----------CCCCCC--
Confidence            369999999998643   48999985         24577 679999999999986544221          112222  


Q ss_pred             CCCChHHHhhhhhcCCCCCCeEEEEcCCCCCCCCCCCCCCchhhHHHHHHHHHHHcCCcceeEccccHHHHHhCCCCccc
Q 026264          160 TEENPEFLQTGVESQLDKDAKIIVACATGGTMKPSQNLPEGQQSRSLIAAYLLVLNGYKNVYHLEGGLYKWFKEELPEVS  239 (241)
Q Consensus       160 ~~~~~~~~~~~~~~~i~~~~~IVvyC~~G~~~~~~~~~~~~~~~rs~~aa~~L~~~Gy~nV~~l~GG~~~W~~~g~p~~~  239 (241)
                       +....|.+.+...+|+++++||||++.|.             ..|.+++|.|+.+|++||++|+|| .+|.++|+|+++
T Consensus        96 -P~~~~f~~~l~~lGI~~d~~VVvYD~~~~-------------~~AaR~wW~Lr~~Gh~~V~vLdGg-~aW~~~g~p~~~  160 (327)
T 3utn_X           96 -PTKKVFDDAMSNLGVQKDDILVVYDRVGN-------------FSSPRCAWTLGVMGHPKVYLLNNF-NQYREFKYPLDS  160 (327)
T ss_dssp             -CCHHHHHHHHHHTTCCTTCEEEEECSSSS-------------SSHHHHHHHHHHTTCSEEEEESCH-HHHHHTTCCCBC
T ss_pred             -cCHHHHHHHHHHcCCCCCCEEEEEeCCCC-------------cHHHHHHHHHHHcCCCceeecccH-HHHHHhCCCccc
Confidence             34456777767789999999999999887             379999999999999999999877 899999999987


Q ss_pred             CC
Q 026264          240 EE  241 (241)
Q Consensus       240 g~  241 (241)
                      ++
T Consensus       161 ~~  162 (327)
T 3utn_X          161 SK  162 (327)
T ss_dssp             CC
T ss_pred             CC
Confidence            63

>1okg_A Possible 3-mercaptopyruvate sulfurtransferase; rhodanese, prolyl isomerase, catalytic triad, serine protease, leishmania pyruvate; HET: CSR; 2.10A {Leishmania major} SCOP: c.46.1.2 c.46.1.2 d.26.1.3

Probab=99.70  E-value=5.7e-18  Score=155.74  Aligned_cols=103  Identities=17%  Similarity=0.225  Sum_probs=78.0

Q ss_pred             CCCeEEEEcCChhhhh-----------hCCCCCCeeechhhHH--hhhhhHHHHHHhhhhhccccCCC-CCChHHHhhhh
Q 026264          106 ENNFVILDVRPEAEFK-----------EAHPPGAINVQIYRLI--KEWTAWDIARRAAFAFFGIFSGT-EENPEFLQTGV  171 (241)
Q Consensus       106 ~~~~~lIDvR~~~Ey~-----------~ghIpGAinip~~~l~--~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~  171 (241)
                      .++.+|||||++.||.           .||||||+|||+..+.  +..                  +. -..++.+++..
T Consensus       172 ~~~~~lIDvR~~~Ef~G~~~~~~~~~~~GhIpGAiniP~~~l~~~~~~------------------~~~~~~~~~l~~~~  233 (373)
T 1okg_A          172 PPQAIITDARSADRFASTVRPYAADKMPGHIEGARNLPYTSHLVTRGD------------------GKVLRSEEEIRHNI  233 (373)
T ss_dssp             CTTCCEEECSCHHHHTCCSSCCTTCSSSSCSTTCEECCGGGGEECCSS------------------SCEECCHHHHHHHH
T ss_pred             ccCceEEeCCCHHHccccccccccCCcCccCCCcEEecHHHhhccCCC------------------CCccCCHHHHHHHH
Confidence            4578999999999999           9999999999998874  210                  00 01222232211


Q ss_pred             h-c--CCCC---CCeEEEEcCCCCCCCCCCCCCCchhhHHHHHHHHHHHcCCcceeEccccHHHHHh-CCCCcccC
Q 026264          172 E-S--QLDK---DAKIIVACATGGTMKPSQNLPEGQQSRSLIAAYLLVLNGYKNVYHLEGGLYKWFK-EELPEVSE  240 (241)
Q Consensus       172 ~-~--~i~~---~~~IVvyC~~G~~~~~~~~~~~~~~~rs~~aa~~L~~~Gy~nV~~l~GG~~~W~~-~g~p~~~g  240 (241)
                      . .  ++++   +++||+||++|.              ||..++..|+.+||+||++|+|||.+|.. .|+|++++
T Consensus       234 ~~~~~gi~~~~~d~~ivvyC~sG~--------------rs~~a~~~L~~~G~~~v~~~~GG~~~W~~~~~~pv~~~  295 (373)
T 1okg_A          234 MTVVQGAGDAADLSSFVFSCGSGV--------------TACINIALVHHLGLGHPYLYCGSWSEYSGLFRPPIMRS  295 (373)
T ss_dssp             HTTCC-----CCCTTSEEECSSSS--------------THHHHHHHHHHTTSCCCEECSSHHHHHHHHTHHHHHHH
T ss_pred             HhhhcCCCcccCCCCEEEECCchH--------------HHHHHHHHHHHcCCCCeeEeCChHHHHhcCCCCCcccC
Confidence            1 1  4577   899999999998              99999999999999999999999999997 68887654

>2eg4_A Probable thiosulfate sulfurtransferase; structural genomics, NPPSFA, national Pro protein structural and functional analyses; 1.70A {Thermus thermophilus} PDB: 2eg3_A

Probab=99.67  E-value=9.2e-17  Score=137.42  Aligned_cols=98  Identities=21%  Similarity=0.228  Sum_probs=70.8

Q ss_pred             CCeEEEEcCChhhhhhCCCCCCeeechh--hHHhhhhhHHHHHHhhhhhccccCCCCCChHHHhhhhhcCCCCCCeEEEE
Q 026264          107 NNFVILDVRPEAEFKEAHPPGAINVQIY--RLIKEWTAWDIARRAAFAFFGIFSGTEENPEFLQTGVESQLDKDAKIIVA  184 (241)
Q Consensus       107 ~~~~lIDvR~~~Ey~~ghIpGAinip~~--~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~IVvy  184 (241)
                      ++++|||||++.||..||||||+|+|+.  .+..........               ...+|.+.  ...++.+++||||
T Consensus         5 ~~~~iiDvR~~~ey~~ghIpgAi~ip~~~~~~~~~~~~~~~~---------------~~~~~~~~--~~~l~~~~~ivvy   67 (230)
T 2eg4_A            5 EDAVLVDTRPRPAYEAGHLPGARHLDLSAPKLRLREEAELKA---------------LEGGLTEL--FQTLGLRSPVVLY   67 (230)
T ss_dssp             TTCEEEECSCHHHHHHCBCTTCEECCCCSCCCCCCSHHHHHH---------------HHHHHHHH--HHHTTCCSSEEEE
T ss_pred             CCEEEEECCChhhHhhCcCCCCEECCccchhcccCCCCCcCC---------------CHHHHHHH--HHhcCCCCEEEEE
Confidence            4789999999999999999999999998  432110000000               00112211  1223448899999


Q ss_pred             cCCCCCCCCCCCCCCchhhHHHHHHHHHHHcCCcceeEccccHHHHHhCCCCcccC
Q 026264          185 CATGGTMKPSQNLPEGQQSRSLIAAYLLVLNGYKNVYHLEGGLYKWFKEELPEVSE  240 (241)
Q Consensus       185 C~~G~~~~~~~~~~~~~~~rs~~aa~~L~~~Gy~nV~~l~GG~~~W~~~g~p~~~g  240 (241)
                      |++|.             .+|.++++.|+ +||+||++|+||   |.+  +|++++
T Consensus        68 c~~g~-------------~~s~~a~~~L~-~G~~~v~~l~GG---W~~--~p~~~~  104 (230)
T 2eg4_A           68 DEGLT-------------SRLCRTAFFLG-LGGLEVQLWTEG---WEP--YATEKE  104 (230)
T ss_dssp             CSSSC-------------HHHHHHHHHHH-HTTCCEEEECSS---CGG--GCCBCS
T ss_pred             cCCCC-------------ccHHHHHHHHH-cCCceEEEeCCC---Ccc--CcccCC
Confidence            99986             38999999999 999999999999   877  887654

>3r2u_A Metallo-beta-lactamase family protein; structural genomics, for structural genomics of infectious diseases, csgid, HYDR; 2.10A {Staphylococcus aureus}

Probab=99.65  E-value=8e-18  Score=158.54  Aligned_cols=87  Identities=29%  Similarity=0.391  Sum_probs=0.0

Q ss_pred             HHHHhcCCCeEEEEcCChhhhhhCCCCCCeeechhhHHhhhhhHHHHHHhhhhhccccCCCCCChHHHhhhhhcCCCCCC
Q 026264          100 ALRLQKENNFVILDVRPEAEFKEAHPPGAINVQIYRLIKEWTAWDIARRAAFAFFGIFSGTEENPEFLQTGVESQLDKDA  179 (241)
Q Consensus       100 l~~~l~~~~~~lIDvR~~~Ey~~ghIpGAinip~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~  179 (241)
                      +.+++++++++|||||++.||..||||||+|+|+.++.+                                ....+++++
T Consensus       379 ~~~~~~~~~~~liDvR~~~e~~~ghIpgA~~ip~~~l~~--------------------------------~~~~l~~~~  426 (466)
T 3r2u_A          379 HSEDITGNESHILDVRNDNEWNNGHLSQAVHVPHGKLLE--------------------------------TDLPFNKND  426 (466)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             HHHHHhCCCcEEEEeCCHHHHhcCcCCCCEECCHHHHHH--------------------------------HHhhCCCCC
Confidence            445555668899999999999999999999999987654                                224478899


Q ss_pred             eEEEEcCCCCCCCCCCCCCCchhhHHHHHHHHHHHcCCcceeEccccHHHHHh
Q 026264          180 KIIVACATGGTMKPSQNLPEGQQSRSLIAAYLLVLNGYKNVYHLEGGLYKWFK  232 (241)
Q Consensus       180 ~IVvyC~~G~~~~~~~~~~~~~~~rs~~aa~~L~~~Gy~nV~~l~GG~~~W~~  232 (241)
                      +||+||++|.              ||..++..|+++||+||++|+|||.+|.+
T Consensus       427 ~iv~~C~~G~--------------rs~~a~~~L~~~G~~~v~~l~GG~~~W~~  465 (466)
T 3r2u_A          427 VIYVHCQSGI--------------RSSIAIGILEHKGYHNIINVNEGYKDIQL  465 (466)
T ss_dssp             -----------------------------------------------------
T ss_pred             eEEEECCCCh--------------HHHHHHHHHHHcCCCCEEEecChHHHHhh
Confidence            9999999998              99999999999999999999999999975

>3utn_X Thiosulfate sulfurtransferase TUM1; rhodanese-like domain; 1.90A {Saccharomyces cerevisiae}

Probab=99.65  E-value=1.5e-16  Score=144.15  Aligned_cols=113  Identities=27%  Similarity=0.418  Sum_probs=87.5

Q ss_pred             cccHHHHHHHhcCC----CeEEEEcCChhhhh-----------hCCCCCCeeechhhHHhhhhhHHHHHHhhhhhccccC
Q 026264           94 SVEAKEALRLQKEN----NFVILDVRPEAEFK-----------EAHPPGAINVQIYRLIKEWTAWDIARRAAFAFFGIFS  158 (241)
Q Consensus        94 ~Is~~el~~~l~~~----~~~lIDvR~~~Ey~-----------~ghIpGAinip~~~l~~~~~~~~~~~~~~~~~~~~~~  158 (241)
                      .++.+++++.++++    +++|||+|++.+|.           .||||||+|+|+..+.+....             .+ 
T Consensus       185 v~~~~~v~~~v~~~~~~~~~~lvDaRs~~rf~G~~~ep~~~~r~GHIPGA~nlP~~~~ld~~~~-------------~~-  250 (327)
T 3utn_X          185 IVDYEEMFQLVKSGELAKKFNAFDARSLGRFEGTEPEPRSDIPSGHIPGTQPLPYGSLLDPETK-------------TY-  250 (327)
T ss_dssp             EECHHHHHHHHHTTCHHHHCEEEECSCHHHHHTSSCCSSSSCCCCBCTTEEECCGGGGSCTTTC-------------CC-
T ss_pred             eecHHHHhhhhhcccccccceeeccCccceecccccCccccccCCCCCCCcccChhhccCCCCC-------------CC-
Confidence            57888998888764    47899999999996           599999999999988653210             00 


Q ss_pred             CCCCChH----HHhhh---hhcCCCCCCeEEEEcCCCCCCCCCCCCCCchhhHHHHHHHHHHHcCCcceeEccccHHHHH
Q 026264          159 GTEENPE----FLQTG---VESQLDKDAKIIVACATGGTMKPSQNLPEGQQSRSLIAAYLLVLNGYKNVYHLEGGLYKWF  231 (241)
Q Consensus       159 ~~~~~~~----~~~~~---~~~~i~~~~~IVvyC~~G~~~~~~~~~~~~~~~rs~~aa~~L~~~Gy~nV~~l~GG~~~W~  231 (241)
                        .+..+    .+++.   ...+++++++||+||++|.              +|+..+..|..+||+||++|+|+|.+|.
T Consensus       251 --~~~~e~l~~~l~~~~~~~~~gid~~k~vI~yCgsGv--------------tA~~~~laL~~lG~~~v~lYdGSWsEW~  314 (327)
T 3utn_X          251 --PEAGEAIHATLEKALKDFHCTLDPSKPTICSCGTGV--------------SGVIIKTALELAGVPNVRLYDGSWTEWV  314 (327)
T ss_dssp             --CCTTHHHHHHHHHHHHHTTCCCCTTSCEEEECSSSH--------------HHHHHHHHHHHTTCCSEEEESSHHHHHH
T ss_pred             --CCcHHHHHHHHHHHHHHhhcCCCCCCCEEEECChHH--------------HHHHHHHHHHHcCCCCceeCCCcHHHhc
Confidence              01111    11110   2347899999999999997              9999999999999999999999999998


Q ss_pred             hCCCC
Q 026264          232 KEELP  236 (241)
Q Consensus       232 ~~g~p  236 (241)
                      ....|
T Consensus       315 ~r~~p  319 (327)
T 3utn_X          315 LKSGP  319 (327)
T ss_dssp             HHHCG
T ss_pred             cccCC
Confidence            76555

>3tp9_A Beta-lactamase and rhodanese domain protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG; 2.70A {Alicyclobacillus acidocaldarius subsp}

Probab=99.62  E-value=2.8e-16  Score=147.72  Aligned_cols=103  Identities=17%  Similarity=0.119  Sum_probs=85.5

Q ss_pred             hccccccHHHHHHHhcCCCeEEEEcCChhhhhhCCCCCCeeechhhHHhhhhhHHHHHHhhhhhccccCCCCCChHHHhh
Q 026264           90 KRVRSVEAKEALRLQKENNFVILDVRPEAEFKEAHPPGAINVQIYRLIKEWTAWDIARRAAFAFFGIFSGTEENPEFLQT  169 (241)
Q Consensus        90 ~~~~~Is~~el~~~l~~~~~~lIDvR~~~Ey~~ghIpGAinip~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  169 (241)
                      ..+..|+++++.+.+++ + +|||+|++.||.+||||||+|+|+...+..                          ++..
T Consensus       270 ~~~~~is~~~l~~~l~~-~-~iiD~R~~~~y~~ghIpGA~~i~~~~~~~~--------------------------~~~~  321 (474)
T 3tp9_A          270 PERVDLPPERVRAWREG-G-VVLDVRPADAFAKRHLAGSLNIPWNKSFVT--------------------------WAGW  321 (474)
T ss_dssp             CEECCCCGGGHHHHHHT-S-EEEECSCHHHHHHSEETTCEECCSSTTHHH--------------------------HHHH
T ss_pred             CCCceeCHHHHHHHhCC-C-EEEECCChHHHhccCCCCeEEECcchHHHH--------------------------HHHh
Confidence            34668999999999987 4 999999999999999999999998753332                          2222


Q ss_pred             hhhcCCCCCCeEEEEcCCCCCCCCCCCCCCchhhHHHHHHHHHHHcCCcceeEccccHHHHHhCCCCccc
Q 026264          170 GVESQLDKDAKIIVACATGGTMKPSQNLPEGQQSRSLIAAYLLVLNGYKNVYHLEGGLYKWFKEELPEVS  239 (241)
Q Consensus       170 ~~~~~i~~~~~IVvyC~~G~~~~~~~~~~~~~~~rs~~aa~~L~~~Gy~nV~~l~GG~~~W~~~g~p~~~  239 (241)
                         . .+++++|||||..|.               +.++++.|+.+||++|+.|.+|+.+|..+|+|++.
T Consensus       322 ---l-~~~~~~vvvy~~~~~---------------~~~~~~~L~~~G~~~v~~~l~G~~~W~~~g~~~~~  372 (474)
T 3tp9_A          322 ---L-LPADRPIHLLAADAI---------------APDVIRALRSIGIDDVVDWTDPAAVDRAAPDDVAS  372 (474)
T ss_dssp             ---H-CCSSSCEEEECCTTT---------------HHHHHHHHHHTTCCCEEEEECGGGGTTCCGGGEEC
T ss_pred             ---c-CCCCCeEEEEECCCc---------------HHHHHHHHHHcCCcceEEecCcHHHHHhccccccc
Confidence               1 378899999999874               56699999999999999877799999999988764

>3r2u_A Metallo-beta-lactamase family protein; structural genomics, for structural genomics of infectious diseases, csgid, HYDR; 2.10A {Staphylococcus aureus}

Probab=99.28  E-value=3.5e-12  Score=119.99  Aligned_cols=80  Identities=19%  Similarity=0.137  Sum_probs=62.1

Q ss_pred             CCeEEEEcCChhhhhhCCCCCCeeechhhHHhhhhhHHHHHHhhhhhccccCCCCCChHHHhhhhhcCCCCCCeEEEEcC
Q 026264          107 NNFVILDVRPEAEFKEAHPPGAINVQIYRLIKEWTAWDIARRAAFAFFGIFSGTEENPEFLQTGVESQLDKDAKIIVACA  186 (241)
Q Consensus       107 ~~~~lIDvR~~~Ey~~ghIpGAinip~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~IVvyC~  186 (241)
                      ++++|||+|++.+|.+||||||+|+|+......+                              ....++++++||+||.
T Consensus       295 ~~~~ilD~R~~~~y~~gHIpGAv~ip~~~~~~~~------------------------------~~~~~~~~~~vvly~~  344 (466)
T 3r2u_A          295 TNRLTFDLRSKEAYHGGHIEGTINIPYDKNFINQ------------------------------IGWYLNYDQEINLIGD  344 (466)
T ss_dssp             CCSEEEECSCHHHHHHSCCTTCEECCSSTTHHHH------------------------------HTTTCCTTSCEEEESC
T ss_pred             CCeEEEECCCHHHHhhCCCCCcEECCccHHHHHH------------------------------HHhccCCCCeEEEEEC
Confidence            4689999999999999999999999987543322                              2234588999999999


Q ss_pred             CCCCCCCCCCCCCchhhHHHHHHHHHHHcCCcceeE-ccccHHHHH
Q 026264          187 TGGTMKPSQNLPEGQQSRSLIAAYLLVLNGYKNVYH-LEGGLYKWF  231 (241)
Q Consensus       187 ~G~~~~~~~~~~~~~~~rs~~aa~~L~~~Gy~nV~~-l~GG~~~W~  231 (241)
                       +.              ++.++++.|+.+||++|+. ++|+...|.
T Consensus       345 -~~--------------~a~~a~~~L~~~G~~~v~~~l~g~~~~~~  375 (466)
T 3r2u_A          345 -YH--------------LVSKATHTLQLIGYDDIAGYQLPQSKIQT  375 (466)
T ss_dssp             -HH--------------HHHHHHHHHHTTTCCCEEEEECCC-----
T ss_pred             -Cc--------------hHHHHHHHhhhhhcccccccccCcccccH
Confidence             44              7999999999999999987 666554443

>2f46_A Hypothetical protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2, hydrolase; HET: MSE; 1.41A {Neisseria meningitidis Z2491}

Probab=97.48  E-value=6.9e-05  Score=59.84  Aligned_cols=41  Identities=17%  Similarity=0.195  Sum_probs=28.7

Q ss_pred             ccHHHHHHHhcCCCeEEEEcCChhh------------hhhC-CCCCCeeechhh
Q 026264           95 VEAKEALRLQKENNFVILDVRPEAE------------FKEA-HPPGAINVQIYR  135 (241)
Q Consensus        95 Is~~el~~~l~~~~~~lIDvR~~~E------------y~~g-hIpGAinip~~~  135 (241)
                      ++++++..+.+.+-..|||+|++.|            |.++ +|.|.+|+|+..
T Consensus        30 ~~~~d~~~L~~~Gi~~IIdlR~~~E~~~~p~~~~~~~~~~~~gi~~~~~iPv~~   83 (156)
T 2f46_A           30 LTKADAEQIAQLGIKTIICNRPDREEESQPDFAQIKQWLEQAGVTGFHHQPVTA   83 (156)
T ss_dssp             CCGGGHHHHHHHTCCEEEECSCTTSSTTCCCHHHHHHHHGGGTCCEEEECCCCT
T ss_pred             CCHHHHHHHHHCCCCEEEECCCCccccCCCcHHHHHHHHHHCCCHhheECccCC
Confidence            5566666655544578999998765            3334 598899999864

>4erc_A Dual specificity protein phosphatase 23; alpha beta, phosphatase(hydrolase), hydrolase; 1.15A {Homo sapiens} PDB: 2img_A

Probab=92.20  E-value=0.11  Score=39.83  Aligned_cols=89  Identities=19%  Similarity=0.198  Sum_probs=46.1

Q ss_pred             HHHHHHHhcCCCeEEEEcCChhhhhhCCCCCC--eeechhhHHhhhhhHHHHHHhhhhhccccCCCCCChHHHhhhhhcC
Q 026264           97 AKEALRLQKENNFVILDVRPEAEFKEAHPPGA--INVQIYRLIKEWTAWDIARRAAFAFFGIFSGTEENPEFLQTGVESQ  174 (241)
Q Consensus        97 ~~el~~~l~~~~~~lIDvR~~~Ey~~ghIpGA--inip~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  174 (241)
                      ++++..+.+.+-..|||+|.+.|......+|-  +++|+.+......  .                 ...++++. ....
T Consensus        25 ~~~~~~L~~~gi~~Vi~l~~~~~~~~~~~~~~~~~~~~~~d~~~~~~--~-----------------~~~~~~~~-i~~~   84 (150)
T 4erc_A           25 PAHYQFLLDLGVRHLVSLTERGPPHSDSCPGLTLHRLRIPDFCPPAP--D-----------------QIDRFVQI-VDEA   84 (150)
T ss_dssp             HHHHHHHHHTTEEEEEECSSSCCTTGGGCTTSEEEECCCCTTSCCCH--H-----------------HHHHHHHH-HHHH
T ss_pred             HHHHHHHHHCCCCEEEEcCCCCCCcccccCCceEEEEecCCCCCCCH--H-----------------HHHHHHHH-HHHH
Confidence            44454444444468999999766544444453  3444433211000  0                 00122222 2222


Q ss_pred             CCCCCeEEEEcCCCCCCCCCCCCCCchhhHHHH--HHHHHHHcCCc
Q 026264          175 LDKDAKIIVACATGGTMKPSQNLPEGQQSRSLI--AAYLLVLNGYK  218 (241)
Q Consensus       175 i~~~~~IVvyC~~G~~~~~~~~~~~~~~~rs~~--aa~~L~~~Gy~  218 (241)
                      ...+.+|+|+|..|.             .|+..  +++.+...|++
T Consensus        85 ~~~~~~vlVHC~~G~-------------~Rsg~~~a~~l~~~~~~~  117 (150)
T 4erc_A           85 NARGEAVGVHCALGF-------------GRTGTMLACYLVKERGLA  117 (150)
T ss_dssp             HHTTCEEEEECSSSS-------------HHHHHHHHHHHHHHHTCC
T ss_pred             HHCCCCEEEECCCCC-------------CHHHHHHHHHHHHHcCCC
Confidence            345689999999998             37763  34445556764

>1v8c_A MOAD related protein; riken structural genomics/proteomics initiative, RSGI, structural genomics, protein binding; 1.60A {Thermus thermophilus} SCOP: d.15.3.1 d.129.5.1

Probab=92.16  E-value=0.0099  Score=48.39  Aligned_cols=25  Identities=16%  Similarity=0.282  Sum_probs=22.2

Q ss_pred             eEEEEcCChhhhhhCCCCCCeeechhhHH
Q 026264          109 FVILDVRPEAEFKEAHPPGAINVQIYRLI  137 (241)
Q Consensus       109 ~~lIDvR~~~Ey~~ghIpGAinip~~~l~  137 (241)
                      .++||||.+.||.    |||+|||-..+.
T Consensus       122 ~~liDvRe~~E~~----pgA~~iprg~lE  146 (168)
T 1v8c_A          122 GAVVRFREVEPLK----VGSLSIPQLRVE  146 (168)
T ss_dssp             TEEEEEEEEEEEE----ETTEEEEEEEEE
T ss_pred             eEEEECCChhhcC----CCCEEcChhHHH
Confidence            4999999999999    999999987653

>2img_A Dual specificity protein phosphatase 23; DUSP23, VHZ, LDP-3, dual specicity protein phosphatase 23, DUS23_human, malate, structural genomics, PSI; 1.93A {Homo sapiens}

Probab=86.27  E-value=0.5  Score=35.89  Aligned_cols=15  Identities=27%  Similarity=0.361  Sum_probs=12.4

Q ss_pred             CCCCeEEEEcCCCCC
Q 026264          176 DKDAKIIVACATGGT  190 (241)
Q Consensus       176 ~~~~~IVvyC~~G~~  190 (241)
                      ..+.+|+|+|..|..
T Consensus        87 ~~~~~vlVHC~aG~~  101 (151)
T 2img_A           87 ARGEAVGVHCALGFG  101 (151)
T ss_dssp             HTTCEEEEECSSSSS
T ss_pred             hCCCcEEEECCCCCC
Confidence            356899999999973

>2hcm_A Dual specificity protein phosphatase; structural genomics, PSI, protein structure INI NEW YORK SGX research center for structural genomics; 2.00A {Mus musculus}

Probab=81.80  E-value=1.1  Score=34.92  Aligned_cols=30  Identities=33%  Similarity=0.513  Sum_probs=22.7

Q ss_pred             CCCCeEEEEcCCCCCCCCCCCCCCchhhHHHHH--HHHHHHcCCc
Q 026264          176 DKDAKIIVACATGGTMKPSQNLPEGQQSRSLIA--AYLLVLNGYK  218 (241)
Q Consensus       176 ~~~~~IVvyC~~G~~~~~~~~~~~~~~~rs~~a--a~~L~~~Gy~  218 (241)
                      ..+.+|+|+|..|.             .|+..+  ++.+...|++
T Consensus        87 ~~~~~VlVHC~aG~-------------~RSg~~~~ayLm~~~~~~  118 (164)
T 2hcm_A           87 RDGGSCLVYCKNGR-------------SRSAAVCTAYLMRHRGHS  118 (164)
T ss_dssp             HTTCEEEEEESSSS-------------HHHHHHHHHHHHHHSCCC
T ss_pred             HcCCEEEEECCCCC-------------chHHHHHHHHHHHHhCCC
Confidence            35689999999997             487743  6777777864

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	241
d1tq1a_	119	c.46.1.3 (A:) Thiosulfate sulfurtransferase/Senesc	5e-15
d1gmxa_	108	c.46.1.3 (A:) Sulfurtransferase GlpE {Escherichia	3e-13
d2gwfa1	135	c.46.1.4 (A:181-315) Ubiquitin carboxyl-terminal h	3e-12
d1c25a_	161	c.46.1.1 (A:) CDC25a {Human (Homo sapiens) [TaxId:	1e-11
d1hzma_	154	c.46.1.1 (A:) Erk2 binding domain of Mapk phosphat	2e-11
d1ymka1	174	c.46.1.1 (A:377-550) CDC25b {Human (Homo sapiens)	8e-11
d1e0ca2	136	c.46.1.2 (A:136-271) Sulfurtransferase {Azotobacte	1e-10
d1rhsa2	144	c.46.1.2 (A:150-293) Rhodanese {Cow (Bos taurus) [	1e-10
d1uara2	141	c.46.1.2 (A:145-285) Sulfurtransferase {Thermus th	4e-10
d1urha2	120	c.46.1.2 (A:149-268) 3-mercaptopyruvate sulfurtran	2e-09
d1qxna_	137	c.46.1.3 (A:) Polysulfide-sulfur transferase (sulf	1e-08
d1rhsa1	149	c.46.1.2 (A:1-149) Rhodanese {Cow (Bos taurus) [Ta	5e-08
d1e0ca1	135	c.46.1.2 (A:1-135) Sulfurtransferase {Azotobacter	3e-07
d1yt8a2	101	c.46.1.2 (A:6-106) Thiosulfate sulfurtransferase P	4e-07
d1okga2	139	c.46.1.2 (A:163-301) 3-mercaptopyruvate sulfurtran	5e-07
d1uara1	143	c.46.1.2 (A:2-144) Sulfurtransferase {Thermus ther	5e-07
d1t3ka_	132	c.46.1.1 (A:) Dual specificity phosphatase Cdc25 {	8e-07
d1yt8a1	136	c.46.1.2 (A:107-242) Thiosulfate sulfurtransferase	1e-06
d1yt8a4	130	c.46.1.2 (A:243-372) Thiosulfate sulfurtransferase	2e-06
d1okga1	156	c.46.1.2 (A:7-162) 3-mercaptopyruvate sulfurtransf	1e-05
d1yt8a3	157	c.46.1.2 (A:373-529) Thiosulfate sulfurtransferase	4e-05
d1urha1	147	c.46.1.2 (A:2-148) 3-mercaptopyruvate sulfurtransf	7e-05

>d1tq1a_ c.46.1.3 (A:) Thiosulfate sulfurtransferase/Senescence-associated protein {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} Length = 119

class: Alpha and beta proteins (a/b)
fold: Rhodanese/Cell cycle control phosphatase
superfamily: Rhodanese/Cell cycle control phosphatase
family: Single-domain sulfurtransferase
domain: Thiosulfate sulfurtransferase/Senescence-associated protein
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

 Score = 67.2 bits (163), Expect = 5e-15
 Identities = 39/150 (26%), Positives = 51/150 (34%), Gaps = 35/150 (23%)

Query: 90  KRVRSVEAKEALRLQKENNFVILDVRPEAEFKEAHPPGAINVQIYRLIKEWTAWDIARRA 149
           +   SV    A  L        LDVR   EF + H  GAINV          +       
Sbjct: 5   RVPSSVSVTVAHDLLLAG-HRYLDVRTPEEFSQGHACGAINVPYMNRGASGMSK------ 57

Query: 150 AFAFFGIFSGTEENPEFLQTGVESQLDKDAKIIVACATGGTMKPSQNLPEGQQSRSLIAA 209
                        N +FL+  V S   +   IIV C +GG              RS+ A 
Sbjct: 58  -------------NTDFLEQ-VSSHFGQSDNIIVGCQSGG--------------RSIKAT 89

Query: 210 YLLVLNGYKNVYHLEGGLYKWFKEELPEVS 239
             L+  G+  V  + GG   W K  LP  +
Sbjct: 90  TDLLHAGFTGVKDIVGGYSAWAKNGLPTKA 119

>d1gmxa_ c.46.1.3 (A:) Sulfurtransferase GlpE {Escherichia coli [TaxId: 562]} Length = 108

class: Alpha and beta proteins (a/b)
fold: Rhodanese/Cell cycle control phosphatase
superfamily: Rhodanese/Cell cycle control phosphatase
family: Single-domain sulfurtransferase
domain: Sulfurtransferase GlpE
species: Escherichia coli [TaxId: 562]

 Score = 61.7 bits (149), Expect = 3e-13
 Identities = 26/148 (17%), Positives = 44/148 (29%), Gaps = 47/148 (31%)

Query: 90  KRVRSVEAKEALRLQKENNFVILDVRPEAEFKEAHPPGAINVQIYRLIKEWTAWDIARRA 149
            +   +   +A +  +E   V++D+R    F   H   A ++    L       D     
Sbjct: 2   DQFECINVADAHQKLQEKEAVLVDIRDPQSFAMGHAVQAFHLTNDTLGAFMRDND----- 56

Query: 150 AFAFFGIFSGTEENPEFLQTGVESQLDKDAKIIVACATGGTMKPSQNLPEGQQSRSLIAA 209
                                       D  ++V C  G              + S  AA
Sbjct: 57  ---------------------------FDTPVMVMCYHG--------------NSSKGAA 75

Query: 210 YLLVLNGYKNVYHLEGGLYKWFKEELPE 237
             L+  GY  VY ++GG   W + + P 
Sbjct: 76  QYLLQQGYDVVYSIDGGFEAW-QRQFPA 102

>d2gwfa1 c.46.1.4 (A:181-315) Ubiquitin carboxyl-terminal hydrolase 8, USP8 {Human (Homo sapiens) [TaxId: 9606]} Length = 135

class: Alpha and beta proteins (a/b)
fold: Rhodanese/Cell cycle control phosphatase
superfamily: Rhodanese/Cell cycle control phosphatase
family: Ubiquitin carboxyl-terminal hydrolase 8, USP8
domain: Ubiquitin carboxyl-terminal hydrolase 8, USP8
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 59.9 bits (144), Expect = 3e-12
 Identities = 17/142 (11%), Positives = 39/142 (27%), Gaps = 18/142 (12%)

Query: 94  SVEAKEALRLQKENN--FVILDVRPEAEFKEAHPPGAINVQIYRLIKEWTAWDIARRAAF 151
           ++ AKE   +  + N   +I+D R   +++++    +++V    +    TA  I      
Sbjct: 2   AITAKELYTMMTDKNISLIIMDARRMQDYQDSCILHSLSVPEEAISPGVTASWIEAHLPD 61

Query: 152 AFFGIFSGTEENPEFLQTGVESQLDKDAKIIVACATGGTMKPSQNLPEGQQSRSLIAAYL 211
                +                +      +++                     +L     
Sbjct: 62  DSKDTW---------------KKRGNVEYVVLLDWFSSAKDLQIGTTLRSLKDALFKWES 106

Query: 212 LVLNGYKNVYHLEGGLYKWFKE 233
             +        LEGG   W   
Sbjct: 107 KTV-LRNEPLVLEGGYENWLLC 127

>d1c25a_ c.46.1.1 (A:) CDC25a {Human (Homo sapiens) [TaxId: 9606]} Length = 161

class: Alpha and beta proteins (a/b)
fold: Rhodanese/Cell cycle control phosphatase
superfamily: Rhodanese/Cell cycle control phosphatase
family: Cell cycle control phosphatase, catalytic domain
domain: CDC25a
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 58.6 bits (141), Expect = 1e-11
 Identities = 21/156 (13%), Positives = 48/156 (30%), Gaps = 44/156 (28%)

Query: 89  QKRVRSVEAKEALRL------QKENNFVILDVRPEAEFKEAHPPGAINVQIYRLIKEWTA 142
            + ++ +  +    +           FVI+D R   E++  H  GA+N+ +   +++   
Sbjct: 19  HQDLKYISPEIMASVLNGKFANLIKEFVIIDCRYPYEYEGGHIKGAVNLHMEEEVED--- 75

Query: 143 WDIARRAAFAFFGIFSGTEENPEFLQTGVESQLDKDAKIIVACATGGTMKPSQNLPEGQQ 202
                                   L+  +     K   ++  C              G +
Sbjct: 76  ----------------------FLLKKPIVPTDGKRVIVVFHCEFSSE--------RGPR 105

Query: 203 SRSLIAAYLLVLN-----GYKNVYHLEGGLYKWFKE 233
               +     + N      Y  +Y L+GG  ++F +
Sbjct: 106 MCRYVRERDRLGNEYPKLHYPELYVLKGGYKEFFMK 141

>d1hzma_ c.46.1.1 (A:) Erk2 binding domain of Mapk phosphatase mkp-3 {Human (Homo sapiens) [TaxId: 9606]} Length = 154

class: Alpha and beta proteins (a/b)
fold: Rhodanese/Cell cycle control phosphatase
superfamily: Rhodanese/Cell cycle control phosphatase
family: Cell cycle control phosphatase, catalytic domain
domain: Erk2 binding domain of Mapk phosphatase mkp-3
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 57.9 bits (139), Expect = 2e-11
 Identities = 24/145 (16%), Positives = 46/145 (31%), Gaps = 18/145 (12%)

Query: 96  EAKEALRLQKENNFVILDVRPEAEFKEAHPPGAINVQIYRLIKEWTAWDIARRAAFAFFG 155
              E L L  E   +++D RP+  ++ +H   AINV I  ++            A     
Sbjct: 22  WLNEQLELGNER-LLLMDCRPQELYESSHIESAINVAIPGIMLRRLQKGNLPVRALF--- 77

Query: 156 IFSGTEENPEFLQTGVESQLDKDAKIIVACATGGTMKPSQNLPEGQQSRSLIAAYLLVLN 215
                            ++      +++   +      +       +S   +    L   
Sbjct: 78  --------TRGEDRDRFTRRCGTDTVVLYDESSSDWNENTG----GESLLGLLLKKLKDE 125

Query: 216 GYKNVYHLEGGLYKWFKEELPEVSE 240
           G    ++LEGG +  F+ E     E
Sbjct: 126 GC-RAFYLEGG-FSKFQAEFSLHCE 148

>d1ymka1 c.46.1.1 (A:377-550) CDC25b {Human (Homo sapiens) [TaxId: 9606]} Length = 174

class: Alpha and beta proteins (a/b)
fold: Rhodanese/Cell cycle control phosphatase
superfamily: Rhodanese/Cell cycle control phosphatase
family: Cell cycle control phosphatase, catalytic domain
domain: CDC25b
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 56.7 bits (136), Expect = 8e-11
 Identities = 28/155 (18%), Positives = 50/155 (32%), Gaps = 34/155 (21%)

Query: 92  VRSVEAKEALRLQKE------NNFVILDVRPEAEFKEAHPPGAINVQIYRLIKEWTAWDI 145
           ++ +  +  + L         + FVI+D R   E++  H   A+N+ + R  + +     
Sbjct: 22  LKYISPETMVALLTGKFSNIVDKFVIVDCRYPYEYEGGHIKTAVNLPLERDAESFL---- 77

Query: 146 ARRAAFAFFGIFSGTEENPEFLQTGVESQLDKDAKIIVACATGGTMKPSQNLPEGQQSRS 205
                                        LDK   +I  C       P       ++ R+
Sbjct: 78  --------------------LKSPIAPCSLDKRVILIFHCEFSSERGPRMCRFIRERDRA 117

Query: 206 LIAAYLLVLNGYKNVYHLEGGLYKWFKEELPEVSE 240
           +          Y  +Y L+GG YK F  + P   E
Sbjct: 118 V---NDYPSLYYPEMYILKGG-YKEFFPQHPNFCE 148

>d1e0ca2 c.46.1.2 (A:136-271) Sulfurtransferase {Azotobacter vinelandii [TaxId: 354]} Length = 136

class: Alpha and beta proteins (a/b)
fold: Rhodanese/Cell cycle control phosphatase
superfamily: Rhodanese/Cell cycle control phosphatase
family: Multidomain sulfurtransferase (rhodanese)
domain: Sulfurtransferase
species: Azotobacter vinelandii [TaxId: 354]

 Score = 55.7 bits (133), Expect = 1e-10
 Identities = 21/146 (14%), Positives = 34/146 (23%), Gaps = 25/146 (17%)

Query: 95  VEAKEALRLQKENNFVILDVRPEAEFKEAHPPGAINVQIYRLIKEWTAWDIARRAAFAFF 154
                 L      +  I D R   E++      A    I   +                 
Sbjct: 14  ASRDYLLGRLGAADLAIWDARSPQEYRGEKVLAAKGGHIPGAVNFEWTA---------AM 64

Query: 155 GIFSGTEENPEFLQTGVESQLDKDAKIIVACATGGTMKPSQNLPEGQQSRSLIAAYLLVL 214
                     +      E  +  D +I+  C T                RS +   +   
Sbjct: 65  DPSRALRIRTDIAGRLEELGITPDKEIVTHCQTHH--------------RSGLTYLIAKA 110

Query: 215 NGYKNVYHLEGGLYKWFK-EELP-EV 238
            GY  V    G   +W    + P E+
Sbjct: 111 LGYPRVKGYAGSWGEWGNHPDTPVEL 136

>d1rhsa2 c.46.1.2 (A:150-293) Rhodanese {Cow (Bos taurus) [TaxId: 9913]} Length = 144

class: Alpha and beta proteins (a/b)
fold: Rhodanese/Cell cycle control phosphatase
superfamily: Rhodanese/Cell cycle control phosphatase
family: Multidomain sulfurtransferase (rhodanese)
domain: Rhodanese
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 55.6 bits (133), Expect = 1e-10
 Identities = 23/144 (15%), Positives = 41/144 (28%), Gaps = 21/144 (14%)

Query: 95  VEAKEALRLQKENNFVILDVRPEAEFKEAHPPGAINVQIYRLIKEWTAWDIARRAAFAFF 154
              ++ L   +   F ++D R +  +    P           I+               F
Sbjct: 13  KTYEQVLENLESKRFQLVDSRAQGRYLGTQPEPDAVGLDSGHIRGSVNMPFMNFLTEDGF 72

Query: 155 GIFSGTEENPEFLQT-GVESQLDKDAKIIVACATGGTMKPSQNLPEGQQSRSLIAAYLLV 213
                   +PE L+      ++D    +I  C  G                +   A    
Sbjct: 73  EK------SPEELRAMFEAKKVDLTKPLIATCRKGV--------------TACHIALAAY 112

Query: 214 LNGYKNVYHLEGGLYKWFKEELPE 237
           L G  +V   +G  ++WF    PE
Sbjct: 113 LCGKPDVAIYDGSWFEWFHRAPPE 136

>d1uara2 c.46.1.2 (A:145-285) Sulfurtransferase {Thermus thermophilus [TaxId: 274]} Length = 141

class: Alpha and beta proteins (a/b)
fold: Rhodanese/Cell cycle control phosphatase
superfamily: Rhodanese/Cell cycle control phosphatase
family: Multidomain sulfurtransferase (rhodanese)
domain: Sulfurtransferase
species: Thermus thermophilus [TaxId: 274]

 Score = 54.1 bits (129), Expect = 4e-10
 Identities = 34/155 (21%), Positives = 49/155 (31%), Gaps = 20/155 (12%)

Query: 91  RVRSVEAKEALRLQKENNFVILDVRPEAEF--KEAHPPGAINVQIYRLIKEWTAWDIARR 148
           R    +  E +   KE    ++DVR   E+  +  H P        R      A +I   
Sbjct: 3   RAYRDDVLEHIIKVKEGKGALVDVRSPQEYRGELTHMPDYPQEGALRAGHIPGAKNIPWA 62

Query: 149 AAFAFFGIFSGTEENPEFLQTGVESQLDKDAKIIVACATGGTMKPSQNLPEGQQSRSLIA 208
            A    G F   EE     +      + KD  I+V C                   S   
Sbjct: 63  KAVNPDGTFKSAEELRALYE---PLGITKDKDIVVYCRIAERS-------------SHSW 106

Query: 209 AYLLVLNGYKNVYHLEGGLYKWFK-EELP-EVSEE 241
             L  L GY +V + +G   +W     +P    EE
Sbjct: 107 FVLKYLLGYPHVKNYDGSWTEWGNLVGVPIAKGEE 141

>d1urha2 c.46.1.2 (A:149-268) 3-mercaptopyruvate sulfurtransferase {Escherichia coli [TaxId: 562]} Length = 120

class: Alpha and beta proteins (a/b)
fold: Rhodanese/Cell cycle control phosphatase
superfamily: Rhodanese/Cell cycle control phosphatase
family: Multidomain sulfurtransferase (rhodanese)
domain: 3-mercaptopyruvate sulfurtransferase
species: Escherichia coli [TaxId: 562]

 Score = 51.9 bits (123), Expect = 2e-09
 Identities = 24/136 (17%), Positives = 41/136 (30%), Gaps = 21/136 (15%)

Query: 95  VEAKEALRLQKENNFVILDVRPEAEFKEAHPPGAINVQIYRLIKEWTAWDIARRAAFAFF 154
           V+  + L    EN   I+D RP A F          ++   +     A ++         
Sbjct: 6   VKVTDVLLASHENTAQIIDARPAARFNAEVDEPRPGLRRGHI---PGALNVPWTELVREG 62

Query: 155 GIFSGTEENPEFLQTGVESQLDKDAKIIVACATGGTMKPSQNLPEGQQSRSLIAAYLLVL 214
            + +  E +  F        +  D  IIV+C              G    + +    L  
Sbjct: 63  ELKTTDELDAIFFGR----GVSYDKPIIVSC--------------GSGVTAAVVLLALAT 104

Query: 215 NGYKNVYHLEGGLYKW 230
               NV   +G   +W
Sbjct: 105 LDVPNVKLYDGAWSEW 120

>d1qxna_ c.46.1.3 (A:) Polysulfide-sulfur transferase (sulfide dehydrogenase, Sud) {Wolinella succinogenes [TaxId: 844]} Length = 137

class: Alpha and beta proteins (a/b)
fold: Rhodanese/Cell cycle control phosphatase
superfamily: Rhodanese/Cell cycle control phosphatase
family: Single-domain sulfurtransferase
domain: Polysulfide-sulfur transferase (sulfide dehydrogenase, Sud)
species: Wolinella succinogenes [TaxId: 844]

 Score = 50.2 bits (119), Expect = 1e-08
 Identities = 33/154 (21%), Positives = 55/154 (35%), Gaps = 42/154 (27%)

Query: 89  QKRVRSVEAKEALRLQKEN-NFVILDVRPEAEFKEAHPPGAINVQIYRLIKEWTAWDIAR 147
           +  +  +  K+A +L +EN +  ++DVR   E K    P   N +     K         
Sbjct: 19  KADMVMLSPKDAYKLLQENPDITLIDVRDPDELKAMGKPDVKNYKHMSRGKLEPLLAK-- 76

Query: 148 RAAFAFFGIFSGTEENPEFLQTGVESQLDKDAKIIVACATGGTMKPSQNLPEGQQSRSLI 207
                                    S LD +  ++V C T               +R+ +
Sbjct: 77  -------------------------SGLDPEKPVVVFCKT--------------AARAAL 97

Query: 208 AAYLLVLNGYKNVYHLEGGLYKWFKEELPEVSEE 241
           A   L   G+K +Y+ EGG+ KW +E LP +   
Sbjct: 98  AGKTLREYGFKTIYNSEGGMDKWLEEGLPSLDRS 131

>d1rhsa1 c.46.1.2 (A:1-149) Rhodanese {Cow (Bos taurus) [TaxId: 9913]} Length = 149

class: Alpha and beta proteins (a/b)
fold: Rhodanese/Cell cycle control phosphatase
superfamily: Rhodanese/Cell cycle control phosphatase
family: Multidomain sulfurtransferase (rhodanese)
domain: Rhodanese
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 48.7 bits (115), Expect = 5e-08
 Identities = 25/155 (16%), Positives = 45/155 (29%), Gaps = 33/155 (21%)

Query: 96  EAKEALRLQKEN-NFVILDVR--------PEAEFKEAHPPGAINVQIYRLIKEWTAWDIA 146
              E++R  K      +LD             E+ E H PGA    I     + + +++ 
Sbjct: 14  WLAESVRAGKVGPGLRVLDASWYSPGTREARKEYLERHVPGASFFDIEECRDKASPYEVM 73

Query: 147 RRAAFAFFGIFSGTEENPEFLQTGVESQLDKDAKIIVACATGGTMKPSQNLPEGQQSRSL 206
             +   F         +                 ++      G+    +           
Sbjct: 74  LPSEAGFADYVGSLGISN------------DTHVVVYDGDDLGSFYAPRV---------- 111

Query: 207 IAAYLLVLNGYKNVYHLEGGLYKWFKEELPEVSEE 241
              ++  + G++ V  L GG   W KE  P  SE 
Sbjct: 112 --WWMFRVFGHRTVSVLNGGFRNWLKEGHPVTSEP 144

>d1e0ca1 c.46.1.2 (A:1-135) Sulfurtransferase {Azotobacter vinelandii [TaxId: 354]} Length = 135

class: Alpha and beta proteins (a/b)
fold: Rhodanese/Cell cycle control phosphatase
superfamily: Rhodanese/Cell cycle control phosphatase
family: Multidomain sulfurtransferase (rhodanese)
domain: Sulfurtransferase
species: Azotobacter vinelandii [TaxId: 354]

 Score = 46.2 bits (108), Expect = 3e-07
 Identities = 24/147 (16%), Positives = 41/147 (27%), Gaps = 26/147 (17%)

Query: 95  VEAKEALRLQKENNFVILDVRPEAEFKEAHPPGAINVQIYRLIKEWTAWDIARRAAFAFF 154
           +E  +          +++D+   A + E H PGA  V   R           +       
Sbjct: 11  IEPADLQARLSAPELILVDLTSAARYAEGHIPGARFVDPKRTQLGQPPAPGLQPPREQLE 70

Query: 155 GIFSGTEENPEFLQTGVESQLDKDAKIIVACATGGTMKPSQNLPEGQQSRSLIAAYLLVL 214
            +F      PE +             ++     GG       L +               
Sbjct: 71  SLFGELGHRPEAVY------------VVYDDEGGGWAGRFIWLLDVIG------------ 106

Query: 215 NGYKNVYHLEGGLYKWFKEELPEVSEE 241
              +  ++L GGL  W  E+ P   E 
Sbjct: 107 --QQRYHYLNGGLTAWLAEDRPLSREL 131

>d1yt8a2 c.46.1.2 (A:6-106) Thiosulfate sulfurtransferase PA2603 {Pseudomonas aeruginosa [TaxId: 287]} Length = 101

class: Alpha and beta proteins (a/b)
fold: Rhodanese/Cell cycle control phosphatase
superfamily: Rhodanese/Cell cycle control phosphatase
family: Multidomain sulfurtransferase (rhodanese)
domain: Thiosulfate sulfurtransferase PA2603
species: Pseudomonas aeruginosa [TaxId: 287]

 Score = 45.0 bits (105), Expect = 4e-07
 Identities = 33/142 (23%), Positives = 44/142 (30%), Gaps = 45/142 (31%)

Query: 92  VRSVEAKEALRLQKENNFVILDVRPEAEFKEAHPPGAINVQIYRLIKEWTAWDIARRAAF 151
           VR+     A  L       +LDVR E  F +AHP  A N+ + RL  E  A         
Sbjct: 3   VRTFHDIRA-ALLARRELALLDVREEDPFAQAHPLFAANLPLSRLELEIHARVP------ 55

Query: 152 AFFGIFSGTEENPEFLQTGVESQLDKDAKIIVACATGGTMKPSQNLPEGQQSRSLIAAYL 211
                                    +D  I V                  +  + +AA  
Sbjct: 56  ------------------------RRDTPITVYD--------------DGEGLAPVAAQR 77

Query: 212 LVLNGYKNVYHLEGGLYKWFKE 233
           L   GY +V  L+GGL  W   
Sbjct: 78  LHDLGYSDVALLDGGLSGWRNA 99

>d1okga2 c.46.1.2 (A:163-301) 3-mercaptopyruvate sulfurtransferase {Leishmania major [TaxId: 5664]} Length = 139

class: Alpha and beta proteins (a/b)
fold: Rhodanese/Cell cycle control phosphatase
superfamily: Rhodanese/Cell cycle control phosphatase
family: Multidomain sulfurtransferase (rhodanese)
domain: 3-mercaptopyruvate sulfurtransferase
species: Leishmania major [TaxId: 5664]

 Score = 45.6 bits (107), Expect = 5e-07
 Identities = 17/134 (12%), Positives = 32/134 (23%), Gaps = 34/134 (25%)

Query: 108 NFVILDVRPEAEF-----------KEAHPPGAINVQIYRLIKEWTAWDIARRAAFAFFGI 156
             +I D R    F              H  GA N+     +       + R        I
Sbjct: 12  QAIITDARSADRFASTVRPYAADKMPGHIEGARNLPYTSHLVTRGDGKVLRSEEEIRHNI 71

Query: 157 FSGTEENPEFLQTGVESQLDKDAKIIVACATGGTMKPSQNLPEGQQSRSLIAAYLLVLNG 216
            +  +                 +  + +C +G                + I   L+   G
Sbjct: 72  MTVVQG---------AGDAADLSSFVFSCGSG--------------VTACINIALVHHLG 108

Query: 217 YKNVYHLEGGLYKW 230
             + Y   G   ++
Sbjct: 109 LGHPYLYCGSWSEY 122

>d1uara1 c.46.1.2 (A:2-144) Sulfurtransferase {Thermus thermophilus [TaxId: 274]} Length = 143

class: Alpha and beta proteins (a/b)
fold: Rhodanese/Cell cycle control phosphatase
superfamily: Rhodanese/Cell cycle control phosphatase
family: Multidomain sulfurtransferase (rhodanese)
domain: Sulfurtransferase
species: Thermus thermophilus [TaxId: 274]

 Score = 45.6 bits (107), Expect = 5e-07
 Identities = 23/148 (15%), Positives = 40/148 (27%), Gaps = 29/148 (19%)

Query: 95  VEAKEALRLQKENNFVILDVR-PEAEFKEAHPPGAINVQIYRLIKEWTAWDIARRAAFAF 153
           V         ++    +L+V      +   H PGA  +   R   +    D      FA 
Sbjct: 9   VSTDWVQEHLEDPKVRVLEVDEDILLYDTGHIPGAQKIDWQRDFWDPVVRDFISEEEFAK 68

Query: 154 FGIFSGTEENPEFLQTGVESQLDKDAKIIVACATGGTMKPSQNLPEGQQSRSLIAAYLLV 213
                                +  D  +++                          +   
Sbjct: 69  LMERL---------------GISNDTTVVLYGDKNNWWAAYAF-------------WFFK 100

Query: 214 LNGYKNVYHLEGGLYKWFKEELPEVSEE 241
            NG+K+V  + GG  KW +E  P  +E 
Sbjct: 101 YNGHKDVRLMNGGRQKWVEEGRPLTTEV 128

>d1t3ka_ c.46.1.1 (A:) Dual specificity phosphatase Cdc25 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} Length = 132

class: Alpha and beta proteins (a/b)
fold: Rhodanese/Cell cycle control phosphatase
superfamily: Rhodanese/Cell cycle control phosphatase
family: Cell cycle control phosphatase, catalytic domain
domain: Dual specificity phosphatase Cdc25
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

 Score = 44.7 bits (104), Expect = 8e-07
 Identities = 20/149 (13%), Positives = 40/149 (26%), Gaps = 33/149 (22%)

Query: 88  LQKRVRSVEAKEALRLQKENNFVILDVRPEAEFKEAHPPGAINVQIYRLIKEWTAWDIAR 147
           + + +  + + + L L +  N  I+DVR E    + H  G+++        + +      
Sbjct: 3   MARSISYITSTQLLPLHRRPNIAIIDVRDEERNYDGHIAGSLHYASGSFDDKISHLVQ-- 60

Query: 148 RAAFAFFGIFSGTEENPEFLQTGVESQLDKDAKIIVACATGGTMKPSQNLPEGQQSRSLI 207
                                      +     ++   A      P+       +     
Sbjct: 61  --------------------------NVKDKDTLVFHSALSQVRGPTC-----ARRLVNY 89

Query: 208 AAYLLVLNGYKNVYHLEGGLYKWFKEELP 236
                   G KN+  LE G   W     P
Sbjct: 90  LDEKKEDTGIKNIMILERGFNGWEASGKP 118

>d1yt8a1 c.46.1.2 (A:107-242) Thiosulfate sulfurtransferase PA2603 {Pseudomonas aeruginosa [TaxId: 287]} Length = 136

class: Alpha and beta proteins (a/b)
fold: Rhodanese/Cell cycle control phosphatase
superfamily: Rhodanese/Cell cycle control phosphatase
family: Multidomain sulfurtransferase (rhodanese)
domain: Thiosulfate sulfurtransferase PA2603
species: Pseudomonas aeruginosa [TaxId: 287]

 Score = 44.5 bits (104), Expect = 1e-06
 Identities = 30/158 (18%), Positives = 40/158 (25%), Gaps = 45/158 (28%)

Query: 81  KTKRELLLQKR-VRSVEAKEAL-RLQKENNFVILDVRPEAEFKEAHPPGAINVQIYRLIK 138
           K   EL+  +R   S+ A+E    L      VILD R   E++    PG I+V    L+ 
Sbjct: 11  KAFGELVEAERHTPSLAAEEVQALLDARAEAVILDARRFDEYQTMSIPGGISVPGAELVL 70

Query: 139 EWTAWDIARRAAFAFFGIFSGTEENPEFLQTGVESQLDKDAKIIVACATGGTMKPSQNLP 198
                                                D   ++IV CA            
Sbjct: 71  RVAELAP------------------------------DPRTRVIVNCAGRTRSII----- 95

Query: 199 EGQQSRSLIAAYLLVLNGYKNVYHLEGGLYKWFKEELP 236
                       LL       V  L  G   W      
Sbjct: 96  --------GTQSLLNAGIPNPVAALRNGTIGWTLAGQQ 125

>d1yt8a4 c.46.1.2 (A:243-372) Thiosulfate sulfurtransferase PA2603 {Pseudomonas aeruginosa [TaxId: 287]} Length = 130

class: Alpha and beta proteins (a/b)
fold: Rhodanese/Cell cycle control phosphatase
superfamily: Rhodanese/Cell cycle control phosphatase
family: Multidomain sulfurtransferase (rhodanese)
domain: Thiosulfate sulfurtransferase PA2603
species: Pseudomonas aeruginosa [TaxId: 287]

 Score = 44.2 bits (103), Expect = 2e-06
 Identities = 25/152 (16%), Positives = 49/152 (32%), Gaps = 47/152 (30%)

Query: 84  RELLLQKRVRSVEAKEALRLQKEN--NFVILDVRPEAEFKEAHPPGAINVQIYRLIKEWT 141
           R +  +  V  ++     + Q E+     +LDVR   E++  H PG+ +    +L++E  
Sbjct: 14  RAVADRAGVERLDLAGLAQWQDEHDRTTYLLDVRTPEEYEAGHLPGSRSTPGGQLVQETD 73

Query: 142 AWDIARRAAFAFFGIFSGTEENPEFLQTGVESQLDKDAKIIVACATGGTMKPSQNLPEGQ 201
                                              + A++++    G             
Sbjct: 74  HVAS------------------------------VRGARLVLVDDDGV------------ 91

Query: 202 QSRSLIAAYLLVLNGYKNVYHLEGGLYKWFKE 233
             R+ ++A  L   G+  V  L+G     F E
Sbjct: 92  --RANMSASWLAQMGW-QVAVLDGLSEADFSE 120

>d1okga1 c.46.1.2 (A:7-162) 3-mercaptopyruvate sulfurtransferase {Leishmania major [TaxId: 5664]} Length = 156

class: Alpha and beta proteins (a/b)
fold: Rhodanese/Cell cycle control phosphatase
superfamily: Rhodanese/Cell cycle control phosphatase
family: Multidomain sulfurtransferase (rhodanese)
domain: 3-mercaptopyruvate sulfurtransferase
species: Leishmania major [TaxId: 5664]

 Score = 41.6 bits (97), Expect = 1e-05
 Identities = 20/143 (13%), Positives = 40/143 (27%), Gaps = 31/143 (21%)

Query: 107 NNFVILDVR--------PEAEFKEAHPPGAINVQIYRLIKEWTAWDIARRAAFAFFGIFS 158
             + I+D R           ++ + H   AI   +   + +      AR           
Sbjct: 20  AEYRIVDCRYSLKIKDHGSIQYAKEHVKSAIRADVDTNLSKLVPTSTARHP--------- 70

Query: 159 GTEENPEFLQTGVESQLDKDAKIIVACATGGTMKPSQNLPEGQQSRSLIAAYLLVLNGYK 218
                 EF+   + + +  +  ++      G M   +              ++L   G  
Sbjct: 71  -LPPCAEFIDWCMANGMAGELPVLCYDDECGAMGGCR------------LWWMLNSLGA- 116

Query: 219 NVYHLEGGLYKWFKEELPEVSEE 241
           + Y + GG        L   S E
Sbjct: 117 DAYVINGGFQACKAAGLEMESGE 139

>d1yt8a3 c.46.1.2 (A:373-529) Thiosulfate sulfurtransferase PA2603 {Pseudomonas aeruginosa [TaxId: 287]} Length = 157

class: Alpha and beta proteins (a/b)
fold: Rhodanese/Cell cycle control phosphatase
superfamily: Rhodanese/Cell cycle control phosphatase
family: Multidomain sulfurtransferase (rhodanese)
domain: Thiosulfate sulfurtransferase PA2603
species: Pseudomonas aeruginosa [TaxId: 287]

 Score = 40.7 bits (94), Expect = 4e-05
 Identities = 22/148 (14%), Positives = 38/148 (25%), Gaps = 46/148 (31%)

Query: 89  QKRVRSVEAKEALRLQKENNFVILDVRPEAEFKEAHPPGAINVQIYRLIKEWTAWDIARR 148
           Q R  +++         E    +LD    A + + H PGA  V   +L +          
Sbjct: 1   QPRADTIDPTTLADWLGEPGTRVLDFTASANYAKRHIPGAAWVLRSQLKQALERL----- 55

Query: 149 AAFAFFGIFSGTEENPEFLQTGVESQLDKDAKIIVACATGGTMKPSQNLPEGQQSRSLIA 208
                                          + ++ C +                 +  A
Sbjct: 56  ---------------------------GTAERYVLTCGSSL--------------LARFA 74

Query: 209 AYLLVLNGYKNVYHLEGGLYKWFKEELP 236
              +     K V+ L+GG   W    LP
Sbjct: 75  VAEVQALSGKPVFLLDGGTSAWVAAGLP 102

>d1urha1 c.46.1.2 (A:2-148) 3-mercaptopyruvate sulfurtransferase {Escherichia coli [TaxId: 562]} Length = 147

class: Alpha and beta proteins (a/b)
fold: Rhodanese/Cell cycle control phosphatase
superfamily: Rhodanese/Cell cycle control phosphatase
family: Multidomain sulfurtransferase (rhodanese)
domain: 3-mercaptopyruvate sulfurtransferase
species: Escherichia coli [TaxId: 562]

 Score = 39.5 bits (91), Expect = 7e-05
 Identities = 27/152 (17%), Positives = 43/152 (28%), Gaps = 36/152 (23%)

Query: 95  VEAKEALRLQKENNFVILDVR----------PEAEFKEAHPPGAINVQIYRLIKEWTAWD 144
           V A        +    I+D R             E+   H PGA+   I  L    +   
Sbjct: 5   VGADWLAEHIDDPEIQIIDARMASPGQEDRNVAQEYLNGHIPGAVFFDIEALSDHTSPLP 64

Query: 145 IARRAAFAFFGIFSGTEENPEFLQTGVESQLDKDAKIIVACATGGTMKPSQNLPEGQQSR 204
                   F                  E  +++D  +IV                     
Sbjct: 65  HMLPRPETFAVAM-------------RELGVNQDKHLIVYDEGNLFS------------- 98

Query: 205 SLIAAYLLVLNGYKNVYHLEGGLYKWFKEELP 236
           +  A ++L   G + V  L GGL  W +++L 
Sbjct: 99  APRAWWMLRTFGVEKVSILGGGLAGWQRDDLL 130

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	241
d1yt8a1	136	Thiosulfate sulfurtransferase PA2603 {Pseudomonas	99.92
d1tq1a_	119	Thiosulfate sulfurtransferase/Senescence-associate	99.92
d1e0ca2	136	Sulfurtransferase {Azotobacter vinelandii [TaxId:	99.92
d1gmxa_	108	Sulfurtransferase GlpE {Escherichia coli [TaxId: 5	99.92
d1urha1	147	3-mercaptopyruvate sulfurtransferase {Escherichia	99.91
d1yt8a3	157	Thiosulfate sulfurtransferase PA2603 {Pseudomonas	99.91
d1e0ca1	135	Sulfurtransferase {Azotobacter vinelandii [TaxId:	99.9
d1uara1	143	Sulfurtransferase {Thermus thermophilus [TaxId: 27	99.9
d1qxna_	137	Polysulfide-sulfur transferase (sulfide dehydrogen	99.89
d1yt8a2	101	Thiosulfate sulfurtransferase PA2603 {Pseudomonas	99.89
d1rhsa2	144	Rhodanese {Cow (Bos taurus) [TaxId: 9913]}	99.89
d1uara2	141	Sulfurtransferase {Thermus thermophilus [TaxId: 27	99.89
d1rhsa1	149	Rhodanese {Cow (Bos taurus) [TaxId: 9913]}	99.88
d1yt8a4	130	Thiosulfate sulfurtransferase PA2603 {Pseudomonas	99.88
d1t3ka_	132	Dual specificity phosphatase Cdc25 {Thale cress (A	99.87
d1urha2	120	3-mercaptopyruvate sulfurtransferase {Escherichia	99.84
d1okga1	156	3-mercaptopyruvate sulfurtransferase {Leishmania m	99.83
d1okga2	139	3-mercaptopyruvate sulfurtransferase {Leishmania m	99.81
d1c25a_	161	CDC25a {Human (Homo sapiens) [TaxId: 9606]}	99.78
d2gwfa1	135	Ubiquitin carboxyl-terminal hydrolase 8, USP8 {Hum	99.73
d1ymka1	174	CDC25b {Human (Homo sapiens) [TaxId: 9606]}	99.73
d1hzma_	154	Erk2 binding domain of Mapk phosphatase mkp-3 {Hum	99.63
d1jl3a_	137	Arsenate reductase ArsC {Bacillus subtilis [TaxId:	89.74
d1xria_	151	Putative phosphatase At1g05000 {Thale cress (Arabi	82.29
d1c4oa2	174	Nucleotide excision repair enzyme UvrB {Thermus th	81.67
d1npya1	167	Shikimate 5-dehydrogenase-like protein HI0607 {Hae	81.33
d1ywfa1	272	Phosphotyrosine protein phosphatase PtpB {Mycobact	80.3

>d1yt8a1 c.46.1.2 (A:107-242) Thiosulfate sulfurtransferase PA2603 {Pseudomonas aeruginosa [TaxId: 287]}

class: Alpha and beta proteins (a/b)
fold: Rhodanese/Cell cycle control phosphatase
superfamily: Rhodanese/Cell cycle control phosphatase
family: Multidomain sulfurtransferase (rhodanese)
domain: Thiosulfate sulfurtransferase PA2603
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=99.92  E-value=2.8e-25  Score=175.66  Aligned_cols=108  Identities=29%  Similarity=0.362  Sum_probs=94.4

Q ss_pred             hccccccHHHHHHHhcCC-CeEEEEcCChhhhhhCCCCCCeeechhhHHhhhhhHHHHHHhhhhhccccCCCCCChHHHh
Q 026264           90 KRVRSVEAKEALRLQKEN-NFVILDVRPEAEFKEAHPPGAINVQIYRLIKEWTAWDIARRAAFAFFGIFSGTEENPEFLQ  168 (241)
Q Consensus        90 ~~~~~Is~~el~~~l~~~-~~~lIDvR~~~Ey~~ghIpGAinip~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  168 (241)
                      ..++.|+++++.++++++ +++|||||++.||..||||||+|||...+....                            
T Consensus        21 ~~~~~Is~~el~~~l~~~~~~~liDvR~~~e~~~ghIpGAi~ip~~~l~~~~----------------------------   72 (136)
T d1yt8a1          21 RHTPSLAAEEVQALLDARAEAVILDARRFDEYQTMSIPGGISVPGAELVLRV----------------------------   72 (136)
T ss_dssp             HCCCEECHHHHHHHHHTTCSEEEEECSCHHHHHHSBCTTCEECCGGGHHHHH----------------------------
T ss_pred             cCCCccCHHHHHHHHhcCCCcEEEEcCChhhccceecCCchhhhhhHHHHHh----------------------------
Confidence            567889999999988654 689999999999999999999999998765421                            


Q ss_pred             hhhhcCCCCCCeEEEEcCCCCCCCCCCCCCCchhhHHHHHHHHHHHcCCcc-eeEccccHHHHHhCCCCcccCC
Q 026264          169 TGVESQLDKDAKIIVACATGGTMKPSQNLPEGQQSRSLIAAYLLVLNGYKN-VYHLEGGLYKWFKEELPEVSEE  241 (241)
Q Consensus       169 ~~~~~~i~~~~~IVvyC~~G~~~~~~~~~~~~~~~rs~~aa~~L~~~Gy~n-V~~l~GG~~~W~~~g~p~~~g~  241 (241)
                        .....+++++||+||.+|.              ||..++..|+..||+| |++|+||+.+|..+|+|+++|+
T Consensus        73 --~~l~~~~~~~iV~~C~~g~--------------rs~~aa~~L~~~G~~~~V~~L~GG~~~W~~~G~pve~g~  130 (136)
T d1yt8a1          73 --AELAPDPRTRVIVNCAGRT--------------RSIIGTQSLLNAGIPNPVAALRNGTIGWTLAGQQLEHGQ  130 (136)
T ss_dssp             --HHHCCSTTSEEEEECSSSH--------------HHHHHHHHHHHTTCSSCEEEETTHHHHHHHTTCCCBCSC
T ss_pred             --hcccccccceEEEEcCCCC--------------chHHHHHHHHHcCCCceEEEeCCcHHHHHHCCCCceeCC
Confidence              1133567889999999997              9999999999999986 9999999999999999999985

>d1tq1a_ c.46.1.3 (A:) Thiosulfate sulfurtransferase/Senescence-associated protein {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Alpha and beta proteins (a/b)
fold: Rhodanese/Cell cycle control phosphatase
superfamily: Rhodanese/Cell cycle control phosphatase
family: Single-domain sulfurtransferase
domain: Thiosulfate sulfurtransferase/Senescence-associated protein
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=99.92  E-value=4.4e-26  Score=175.92  Aligned_cols=111  Identities=36%  Similarity=0.548  Sum_probs=96.1

Q ss_pred             ccccHHHHHHHhcCCCeEEEEcCChhhhhhCCCCCCeeechhhHHhhhhhHHHHHHhhhhhccccCCCCCChHHHhhhhh
Q 026264           93 RSVEAKEALRLQKENNFVILDVRPEAEFKEAHPPGAINVQIYRLIKEWTAWDIARRAAFAFFGIFSGTEENPEFLQTGVE  172 (241)
Q Consensus        93 ~~Is~~el~~~l~~~~~~lIDvR~~~Ey~~ghIpGAinip~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  172 (241)
                      ..|++.++.++++. +.+|||||++.||..||||||+|+|+..+...                   .....++|+++ ..
T Consensus         8 ~~i~~~~a~~l~~~-g~~liDvR~~~e~~~ghi~ga~~ip~~~~~~~-------------------~~~~~~~~~~~-~~   66 (119)
T d1tq1a_           8 SSVSVTVAHDLLLA-GHRYLDVRTPEEFSQGHACGAINVPYMNRGAS-------------------GMSKNTDFLEQ-VS   66 (119)
T ss_dssp             EEEEHHHHHHHHHH-TCCEEEESCHHHHHHCCBTTBEECCSCCCSTT-------------------TCCCTTTHHHH-HT
T ss_pred             CccCHHHHHHHHHC-cCEEEECCCHHHHHcCCCCCccchhhcccccc-------------------cccccHHHHHH-HH
Confidence            46888888888876 67899999999999999999999998764331                   12345677777 66


Q ss_pred             cCCCCCCeEEEEcCCCCCCCCCCCCCCchhhHHHHHHHHHHHcCCcceeEccccHHHHHhCCCCcc
Q 026264          173 SQLDKDAKIIVACATGGTMKPSQNLPEGQQSRSLIAAYLLVLNGYKNVYHLEGGLYKWFKEELPEV  238 (241)
Q Consensus       173 ~~i~~~~~IVvyC~~G~~~~~~~~~~~~~~~rs~~aa~~L~~~Gy~nV~~l~GG~~~W~~~g~p~~  238 (241)
                      ..++++++|||||++|.              ||..++..|.++||+||++|+||+.+|.++|+|++
T Consensus        67 ~~~~~~~~iv~~C~~G~--------------rs~~a~~~L~~~G~~nv~~l~GG~~~W~~~g~P~e  118 (119)
T d1tq1a_          67 SHFGQSDNIIVGCQSGG--------------RSIKATTDLLHAGFTGVKDIVGGYSAWAKNGLPTK  118 (119)
T ss_dssp             TTCCTTSSEEEEESSCS--------------HHHHHHHHHHHHHCCSEEEEECCHHHHHHHTCCCC
T ss_pred             HhcCCCcEEEEEcCCcC--------------cHHHHHHHHHhcccCCeEEecChHHHHHHCCCCcc
Confidence            67889999999999998              99999999999999999999999999999999987

>d1e0ca2 c.46.1.2 (A:136-271) Sulfurtransferase {Azotobacter vinelandii [TaxId: 354]}

class: Alpha and beta proteins (a/b)
fold: Rhodanese/Cell cycle control phosphatase
superfamily: Rhodanese/Cell cycle control phosphatase
family: Multidomain sulfurtransferase (rhodanese)
domain: Sulfurtransferase
species: Azotobacter vinelandii [TaxId: 354]

Probab=99.92  E-value=5.8e-25  Score=173.91  Aligned_cols=115  Identities=20%  Similarity=0.269  Sum_probs=95.7

Q ss_pred             ccccHHHHHHHhcCCCeEEEEcCChhhhh--------hCCCCCCeeechhhHHhhhhhHHHHHHhhhhhccccCCCCCCh
Q 026264           93 RSVEAKEALRLQKENNFVILDVRPEAEFK--------EAHPPGAINVQIYRLIKEWTAWDIARRAAFAFFGIFSGTEENP  164 (241)
Q Consensus        93 ~~Is~~el~~~l~~~~~~lIDvR~~~Ey~--------~ghIpGAinip~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~  164 (241)
                      ..++.+++++.+++++++|||+|++.||.        .||||||+|+|+..+.+..              +.+...+   
T Consensus        12 ~~~s~d~l~~~l~~~~~~liD~R~~~ey~G~~~~~~~~GhIPGAinip~~~~~~~~--------------~~~~~~~---   74 (136)
T d1e0ca2          12 PTASRDYLLGRLGAADLAIWDARSPQEYRGEKVLAAKGGHIPGAVNFEWTAAMDPS--------------RALRIRT---   74 (136)
T ss_dssp             TBCCHHHHHHHTTCTTEEEEECSCHHHHTTSSCCSSSCSBCTTCEECCGGGGEEGG--------------GTTEECT---
T ss_pred             ceEcHHHHHHhhCCCCeEEEECcChHHhcccccccccCCcchhHhhhhhhhhhccc--------------cccchhH---
Confidence            46999999999998899999999999996        7999999999998875431              1122222   


Q ss_pred             HHHhhhhhcCCCCCCeEEEEcCCCCCCCCCCCCCCchhhHHHHHHHHHHHcCCcceeEccccHHHHHh-CCCCcc
Q 026264          165 EFLQTGVESQLDKDAKIIVACATGGTMKPSQNLPEGQQSRSLIAAYLLVLNGYKNVYHLEGGLYKWFK-EELPEV  238 (241)
Q Consensus       165 ~~~~~~~~~~i~~~~~IVvyC~~G~~~~~~~~~~~~~~~rs~~aa~~L~~~Gy~nV~~l~GG~~~W~~-~g~p~~  238 (241)
                      ++.+.+...+++++++||+||++|.              ||..+++.|+.+||+||++|+|||.+|.. .++|+|
T Consensus        75 ~l~~~~~~~gi~~~~~vV~yC~~G~--------------~a~~~~~~l~~~G~~~v~~ydGg~~eW~~~~~~PvE  135 (136)
T d1e0ca2          75 DIAGRLEELGITPDKEIVTHCQTHH--------------RSGLTYLIAKALGYPRVKGYAGSWGEWGNHPDTPVE  135 (136)
T ss_dssp             THHHHHHHTTCCTTSEEEEECSSSS--------------HHHHHHHHHHHTTCSCEEECSSHHHHHTTCTTCCCB
T ss_pred             HHhhhhhhcccCCCCceEEeCCChH--------------HHHHHHHHHHHcCCCCcEEecCCHHHHhcCCCCCCc
Confidence            3333334478999999999999997              99999999999999999999999999976 499987

>d1gmxa_ c.46.1.3 (A:) Sulfurtransferase GlpE {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Rhodanese/Cell cycle control phosphatase
superfamily: Rhodanese/Cell cycle control phosphatase
family: Single-domain sulfurtransferase
domain: Sulfurtransferase GlpE
species: Escherichia coli [TaxId: 562]

Probab=99.92  E-value=2e-25  Score=169.53  Aligned_cols=102  Identities=25%  Similarity=0.434  Sum_probs=91.1

Q ss_pred             ccccccHHHHHHHhcCCCeEEEEcCChhhhhhCCCCCCeeechhhHHhhhhhHHHHHHhhhhhccccCCCCCChHHHhhh
Q 026264           91 RVRSVEAKEALRLQKENNFVILDVRPEAEFKEAHPPGAINVQIYRLIKEWTAWDIARRAAFAFFGIFSGTEENPEFLQTG  170 (241)
Q Consensus        91 ~~~~Is~~el~~~l~~~~~~lIDvR~~~Ey~~ghIpGAinip~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  170 (241)
                      .++.|+++|+.+++++++++|||||++.||..||||||+|+|...+..                                
T Consensus         3 ~~~~Is~~e~~~~l~~~~~~liDvR~~~e~~~ghI~gA~~ip~~~l~~--------------------------------   50 (108)
T d1gmxa_           3 QFECINVADAHQKLQEKEAVLVDIRDPQSFAMGHAVQAFHLTNDTLGA--------------------------------   50 (108)
T ss_dssp             SCEEECHHHHHHHHHTTCCEEEECSCHHHHHHCEETTCEECCHHHHHH--------------------------------
T ss_pred             CCCEeCHHHHHHHHHCCCeEEEECCCHHHHHhcCCCCcccccchhHHH--------------------------------
Confidence            467899999999999889999999999999999999999999987654                                


Q ss_pred             hhcCCCCCCeEEEEcCCCCCCCCCCCCCCchhhHHHHHHHHHHHcCCcceeEccccHHHHHhCCCCccc
Q 026264          171 VESQLDKDAKIIVACATGGTMKPSQNLPEGQQSRSLIAAYLLVLNGYKNVYHLEGGLYKWFKEELPEVS  239 (241)
Q Consensus       171 ~~~~i~~~~~IVvyC~~G~~~~~~~~~~~~~~~rs~~aa~~L~~~Gy~nV~~l~GG~~~W~~~g~p~~~  239 (241)
                      ....++++++|||||.+|.              ||..++..|.+.||+||++|+||+.+|.+. +|++.
T Consensus        51 ~~~~~~~~~~ivv~c~~g~--------------rs~~~a~~L~~~G~~~v~~l~GG~~~W~~~-~p~e~  104 (108)
T d1gmxa_          51 FMRDNDFDTPVMVMCYHGN--------------SSKGAAQYLLQQGYDVVYSIDGGFEAWQRQ-FPAEV  104 (108)
T ss_dssp             HHHHSCTTSCEEEECSSSS--------------HHHHHHHHHHHHTCSSEEEETTHHHHHHHH-CGGGE
T ss_pred             HhhhccccCcccccCCCCh--------------HHHHHHHHHHHcCCCCEEEEcChHHHHHHc-CCCcc
Confidence            2234788999999999987              999999999999999999999999999754 88754

>d1urha1 c.46.1.2 (A:2-148) 3-mercaptopyruvate sulfurtransferase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Rhodanese/Cell cycle control phosphatase
superfamily: Rhodanese/Cell cycle control phosphatase
family: Multidomain sulfurtransferase (rhodanese)
domain: 3-mercaptopyruvate sulfurtransferase
species: Escherichia coli [TaxId: 562]

Probab=99.91  E-value=8e-25  Score=175.15  Aligned_cols=122  Identities=22%  Similarity=0.232  Sum_probs=99.2

Q ss_pred             cccHHHHHHHhcCCCeEEEEcC----------ChhhhhhCCCCCCeeechhhHHhhhhhHHHHHHhhhhhccccCCCCCC
Q 026264           94 SVEAKEALRLQKENNFVILDVR----------PEAEFKEAHPPGAINVQIYRLIKEWTAWDIARRAAFAFFGIFSGTEEN  163 (241)
Q Consensus        94 ~Is~~el~~~l~~~~~~lIDvR----------~~~Ey~~ghIpGAinip~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~  163 (241)
                      -|++++|.+.|++++++|||+|          ...+|..||||||+|+++..+.+...          .+.+.   .+..
T Consensus         4 lVs~~wL~~~L~~~~v~iiD~r~~~~~~~~~~~~~~y~~gHIPGAi~~~~~~~~~~~~----------~~~~~---~p~~   70 (147)
T d1urha1           4 FVGADWLAEHIDDPEIQIIDARMASPGQEDRNVAQEYLNGHIPGAVFFDIEALSDHTS----------PLPHM---LPRP   70 (147)
T ss_dssp             EECHHHHHTTTTCTTEEEEECCCCCSSCTTCCHHHHHHHSBCTTCEECCGGGGSCSSS----------SSSSC---CCCH
T ss_pred             cCcHHHHHHHhCCCCeEEEEeeCCCCCccCccHHHHHHhCCccccEEeehhhhccccc----------ccccc---CCCH
Confidence            4899999999999899999999          34689999999999999877643211          01111   1234


Q ss_pred             hHHHhhhhhcCCCCCCeEEEEcCCCCCCCCCCCCCCchhhHHHHHHHHHHHcCCcceeEccccHHHHHhCCCCcccCC
Q 026264          164 PEFLQTGVESQLDKDAKIIVACATGGTMKPSQNLPEGQQSRSLIAAYLLVLNGYKNVYHLEGGLYKWFKEELPEVSEE  241 (241)
Q Consensus       164 ~~~~~~~~~~~i~~~~~IVvyC~~G~~~~~~~~~~~~~~~rs~~aa~~L~~~Gy~nV~~l~GG~~~W~~~g~p~~~g~  241 (241)
                      .+|.+.+...+++++++||+||..++.             .|.++++.|+.+||+||++|+||+.+|.++|+|+++|+
T Consensus        71 ~~~~~~l~~~Gi~~~~~vVvY~~~~~~-------------~A~r~~~~L~~~G~~~V~vLdGG~~~W~~~g~pv~~~~  135 (147)
T d1urha1          71 ETFAVAMRELGVNQDKHLIVYDEGNLF-------------SAPRAWWMLRTFGVEKVSILGGGLAGWQRDDLLLEEGA  135 (147)
T ss_dssp             HHHHHHHHHTTCCTTSEEEEECSSSCS-------------SHHHHHHHHHHTTCSCEEEETTHHHHHHHTTCCCBBSC
T ss_pred             HHHHHHHHHhCcCCCCeEEEEeCCCcc-------------cchhHHHHHHhhcccceEEeCChHHHHHHcCCCccCCC
Confidence            455555566899999999999987762             78999999999999999999999999999999999874

>d1yt8a3 c.46.1.2 (A:373-529) Thiosulfate sulfurtransferase PA2603 {Pseudomonas aeruginosa [TaxId: 287]}

class: Alpha and beta proteins (a/b)
fold: Rhodanese/Cell cycle control phosphatase
superfamily: Rhodanese/Cell cycle control phosphatase
family: Multidomain sulfurtransferase (rhodanese)
domain: Thiosulfate sulfurtransferase PA2603
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=99.91  E-value=4.8e-25  Score=177.88  Aligned_cols=105  Identities=22%  Similarity=0.327  Sum_probs=95.0

Q ss_pred             ccccccHHHHHHHhcCCCeEEEEcCChhhhhhCCCCCCeeechhhHHhhhhhHHHHHHhhhhhccccCCCCCChHHHhhh
Q 026264           91 RVRSVEAKEALRLQKENNFVILDVRPEAEFKEAHPPGAINVQIYRLIKEWTAWDIARRAAFAFFGIFSGTEENPEFLQTG  170 (241)
Q Consensus        91 ~~~~Is~~el~~~l~~~~~~lIDvR~~~Ey~~ghIpGAinip~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  170 (241)
                      .+..|+++++.+++++++.+|||||++.||..||||||+|+|...+..                                
T Consensus         3 ~~~~Is~~el~~~l~~~~~~ivDvR~~~e~~~ghIpga~~~~~~~~~~--------------------------------   50 (157)
T d1yt8a3           3 RADTIDPTTLADWLGEPGTRVLDFTASANYAKRHIPGAAWVLRSQLKQ--------------------------------   50 (157)
T ss_dssp             CCCEECHHHHHHHTTSTTEEEEECSCHHHHHHCBCTTCEECCGGGHHH--------------------------------
T ss_pred             CCCEECHHHHHHHHhCCCeEEEEeCCHHHHhhcccccceecccccccc--------------------------------
Confidence            467899999999999889999999999999999999999999987654                                


Q ss_pred             hhcCCCCCCeEEEEcCCCCCCCCCCCCCCchhhHHHHHHHHHHHcCCcceeEccccHHHHHhCCCCcccCC
Q 026264          171 VESQLDKDAKIIVACATGGTMKPSQNLPEGQQSRSLIAAYLLVLNGYKNVYHLEGGLYKWFKEELPEVSEE  241 (241)
Q Consensus       171 ~~~~i~~~~~IVvyC~~G~~~~~~~~~~~~~~~rs~~aa~~L~~~Gy~nV~~l~GG~~~W~~~g~p~~~g~  241 (241)
                      ....++++++||+||.+|.              +|..++..|..+||+||++|+||+.+|.++|+|+++++
T Consensus        51 ~~~~~~~~~~vv~~c~~g~--------------rs~~~a~~l~~~G~~~v~~L~GG~~~W~~aGlp~~~~~  107 (157)
T d1yt8a3          51 ALERLGTAERYVLTCGSSL--------------LARFAVAEVQALSGKPVFLLDGGTSAWVAAGLPTEDGE  107 (157)
T ss_dssp             HHHHHCCCSEEEEECSSSH--------------HHHHHHHHHHHHHCSCEEEETTHHHHHHHTTCCCBCSS
T ss_pred             cccccccCcceeeccCCcc--------------hHHHHHHHHhcccCceEEEecCCHHHHhhCCCCCcCCC
Confidence            2234678899999999987              99999999999999999999999999999999999864

>d1e0ca1 c.46.1.2 (A:1-135) Sulfurtransferase {Azotobacter vinelandii [TaxId: 354]}

class: Alpha and beta proteins (a/b)
fold: Rhodanese/Cell cycle control phosphatase
superfamily: Rhodanese/Cell cycle control phosphatase
family: Multidomain sulfurtransferase (rhodanese)
domain: Sulfurtransferase
species: Azotobacter vinelandii [TaxId: 354]

Probab=99.90  E-value=6e-24  Score=165.34  Aligned_cols=121  Identities=22%  Similarity=0.254  Sum_probs=96.1

Q ss_pred             cccHHHHHHHhcCCCeEEEEcCChhhhhhCCCCCCeeechhhHHhhhhhHHHHHHhhhhhccccCCCCCCh-HHHhhhhh
Q 026264           94 SVEAKEALRLQKENNFVILDVRPEAEFKEAHPPGAINVQIYRLIKEWTAWDIARRAAFAFFGIFSGTEENP-EFLQTGVE  172 (241)
Q Consensus        94 ~Is~~el~~~l~~~~~~lIDvR~~~Ey~~ghIpGAinip~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~  172 (241)
                      .|+++||.+++++++++|||||++.||..||||||+|+|+..+......              ........ .+......
T Consensus        10 lIs~~el~~~l~~~~~viiDvR~~~ey~~gHIpgA~~~~~~~~~~~~~~--------------~~~~~~~~~~~~~~~~~   75 (135)
T d1e0ca1          10 VIEPADLQARLSAPELILVDLTSAARYAEGHIPGARFVDPKRTQLGQPP--------------APGLQPPREQLESLFGE   75 (135)
T ss_dssp             EECHHHHHTTTTCTTEEEEECSCHHHHHHCBSTTCEECCGGGGSCCCTT--------------CTTSCCCHHHHHHHHHH
T ss_pred             EeeHHHHHHHhcCCCeEEEECCCHHHHhcccCccccccchhhhhhcccc--------------cchhhcchhhhhhhhcc
Confidence            5899999999998899999999999999999999999998876432110              11111122 22222234


Q ss_pred             cCCCCCCeEEEEcCCCCCCCCCCCCCCchhhHHHHHHHHHHHcCCcceeEccccHHHHHhCCCCcccCC
Q 026264          173 SQLDKDAKIIVACATGGTMKPSQNLPEGQQSRSLIAAYLLVLNGYKNVYHLEGGLYKWFKEELPEVSEE  241 (241)
Q Consensus       173 ~~i~~~~~IVvyC~~G~~~~~~~~~~~~~~~rs~~aa~~L~~~Gy~nV~~l~GG~~~W~~~g~p~~~g~  241 (241)
                      .....+..+|+||..++             .++.++++.|+.+||+||++|+||+.+|+++|+|+++++
T Consensus        76 ~~~~~~~~~i~~~~~~~-------------~~~~~~~~~l~~~G~~~V~~l~GG~~~W~~~g~p~~~~~  131 (135)
T d1e0ca1          76 LGHRPEAVYVVYDDEGG-------------GWAGRFIWLLDVIGQQRYHYLNGGLTAWLAEDRPLSREL  131 (135)
T ss_dssp             HTCCTTCEEEEECSSSS-------------HHHHHHHHHHHHTTCCCEEEETTHHHHHHHTTCCCBCCC
T ss_pred             ccccccccccccccccC-------------ccchhhHHHHHhccCCCEEEecChHHHHHHCCCCCCCCC
Confidence            56778888899988776             389999999999999999999999999999999999874

>d1uara1 c.46.1.2 (A:2-144) Sulfurtransferase {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: Rhodanese/Cell cycle control phosphatase
superfamily: Rhodanese/Cell cycle control phosphatase
family: Multidomain sulfurtransferase (rhodanese)
domain: Sulfurtransferase
species: Thermus thermophilus [TaxId: 274]

Probab=99.90  E-value=3.1e-24  Score=170.90  Aligned_cols=119  Identities=20%  Similarity=0.267  Sum_probs=97.1

Q ss_pred             cccHHHHHHHhcCCCeEEEEcCC-hhhhhhCCCCCCeeechhhHHhhhhhHHHHHHhhhhhccccCCCCCChHHHhhhhh
Q 026264           94 SVEAKEALRLQKENNFVILDVRP-EAEFKEAHPPGAINVQIYRLIKEWTAWDIARRAAFAFFGIFSGTEENPEFLQTGVE  172 (241)
Q Consensus        94 ~Is~~el~~~l~~~~~~lIDvR~-~~Ey~~ghIpGAinip~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  172 (241)
                      .|+++||.+.+++++++|||||. ..+|..||||||+|+++.......            ..+.+   ....+|.+.+..
T Consensus         8 lVs~~~l~~~l~~~~v~iiDvr~~~~~y~~gHIPgAi~~~~~~~~~~~------------~~~~l---~~~~~l~~~~~~   72 (143)
T d1uara1           8 LVSTDWVQEHLEDPKVRVLEVDEDILLYDTGHIPGAQKIDWQRDFWDP------------VVRDF---ISEEEFAKLMER   72 (143)
T ss_dssp             EECHHHHHTTTTCTTEEEEEECSSTTHHHHCBCTTCEEECHHHHHBCS------------SSSSB---CCHHHHHHHHHH
T ss_pred             cCcHHHHHHHhCCCCeEEEECCCCHHHHhcCCCCCccccccccccccc------------ccccc---hhhHHHHHHhhh
Confidence            58999999999888999999995 788999999999999987543211            11111   123344444455


Q ss_pred             cCCCCCCeEEEEcCCCCCCCCCCCCCCchhhHHHHHHHHHHHcCCcceeEccccHHHHHhCCCCcccC
Q 026264          173 SQLDKDAKIIVACATGGTMKPSQNLPEGQQSRSLIAAYLLVLNGYKNVYHLEGGLYKWFKEELPEVSE  240 (241)
Q Consensus       173 ~~i~~~~~IVvyC~~G~~~~~~~~~~~~~~~rs~~aa~~L~~~Gy~nV~~l~GG~~~W~~~g~p~~~g  240 (241)
                      .+++++++||+||..|.             ..|.++++.|+.+||++|++|+||+.+|..+|+|++++
T Consensus        73 ~Gi~~~~~iVvy~~~~~-------------~~a~~~~~~l~~~G~~~V~vldGG~~~W~~~g~p~~~~  127 (143)
T d1uara1          73 LGISNDTTVVLYGDKNN-------------WWAAYAFWFFKYNGHKDVRLMNGGRQKWVEEGRPLTTE  127 (143)
T ss_dssp             TTCCTTCEEEEECHHHH-------------HHHHHHHHHHHHTTCSCEEEETTHHHHHHHHTCCCBCC
T ss_pred             hccCCCceEEEecCCCc-------------ccchhHHHHHHHhCCceEEEEcCcHHHHHHCCCCccCC
Confidence            78899999999998876             37889999999999999999999999999999999986

>d1qxna_ c.46.1.3 (A:) Polysulfide-sulfur transferase (sulfide dehydrogenase, Sud) {Wolinella succinogenes [TaxId: 844]}

class: Alpha and beta proteins (a/b)
fold: Rhodanese/Cell cycle control phosphatase
superfamily: Rhodanese/Cell cycle control phosphatase
family: Single-domain sulfurtransferase
domain: Polysulfide-sulfur transferase (sulfide dehydrogenase, Sud)
species: Wolinella succinogenes [TaxId: 844]

Probab=99.89  E-value=1.1e-23  Score=166.66  Aligned_cols=107  Identities=29%  Similarity=0.493  Sum_probs=93.4

Q ss_pred             hccccccHHHHHHHhcC-CCeEEEEcCChhhhhhCC---CCCCeeechhhHHhhhhhHHHHHHhhhhhccccCCCCCChH
Q 026264           90 KRVRSVEAKEALRLQKE-NNFVILDVRPEAEFKEAH---PPGAINVQIYRLIKEWTAWDIARRAAFAFFGIFSGTEENPE  165 (241)
Q Consensus        90 ~~~~~Is~~el~~~l~~-~~~~lIDvR~~~Ey~~gh---IpGAinip~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  165 (241)
                      ..+..|+++|+.+++++ ++++|||||++.||..+|   |+||+|+|...+...                          
T Consensus        20 ~~~~~Isp~e~~~ll~~~~~~~lIDvR~~~E~~~~hip~i~~a~~ip~~~l~~~--------------------------   73 (137)
T d1qxna_          20 ADMVMLSPKDAYKLLQENPDITLIDVRDPDELKAMGKPDVKNYKHMSRGKLEPL--------------------------   73 (137)
T ss_dssp             HSSEEECHHHHHHHHHHCTTSEEEECCCHHHHHHTCEECCSSEEECCTTTSHHH--------------------------
T ss_pred             ccCCEEcHHHHHHHHHcCcCEEEEECCcHHHHHHhccccccccccCCccccccc--------------------------
Confidence            57889999999999964 579999999999999999   667899998765432                          


Q ss_pred             HHhhhhhcCCCCCCeEEEEcCCCCCCCCCCCCCCchhhHHHHHHHHHHHcCCcceeEccccHHHHHhCCCCcccC
Q 026264          166 FLQTGVESQLDKDAKIIVACATGGTMKPSQNLPEGQQSRSLIAAYLLVLNGYKNVYHLEGGLYKWFKEELPEVSE  240 (241)
Q Consensus       166 ~~~~~~~~~i~~~~~IVvyC~~G~~~~~~~~~~~~~~~rs~~aa~~L~~~Gy~nV~~l~GG~~~W~~~g~p~~~g  240 (241)
                       +   ....++++++|||||.+|.              ||..++..|.++||+||++|+||+.+|.++|+|++..
T Consensus        74 -~---~~~~~~~~~~ivvyC~~G~--------------rs~~aa~~L~~~G~~nV~~l~GG~~~W~~~g~P~~~~  130 (137)
T d1qxna_          74 -L---AKSGLDPEKPVVVFCKTAA--------------RAALAGKTLREYGFKTIYNSEGGMDKWLEEGLPSLDR  130 (137)
T ss_dssp             -H---HHHCCCTTSCEEEECCSSS--------------CHHHHHHHHHHHTCSCEEEESSCHHHHHHTTCCEECC
T ss_pred             -c---cccccCcccceeeeecccc--------------hHHHHHHHHHHcCCCcEEEecCHHHHHHHcCCCCCCC
Confidence             1   2246789999999999998              9999999999999999999999999999999998764

>d1yt8a2 c.46.1.2 (A:6-106) Thiosulfate sulfurtransferase PA2603 {Pseudomonas aeruginosa [TaxId: 287]}

class: Alpha and beta proteins (a/b)
fold: Rhodanese/Cell cycle control phosphatase
superfamily: Rhodanese/Cell cycle control phosphatase
family: Multidomain sulfurtransferase (rhodanese)
domain: Thiosulfate sulfurtransferase PA2603
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=99.89  E-value=1.8e-23  Score=156.07  Aligned_cols=99  Identities=29%  Similarity=0.313  Sum_probs=84.8

Q ss_pred             ccccHHHHHHHh-cCCCeEEEEcCChhhhhhCCCCCCeeechhhHHhhhhhHHHHHHhhhhhccccCCCCCChHHHhhhh
Q 026264           93 RSVEAKEALRLQ-KENNFVILDVRPEAEFKEAHPPGAINVQIYRLIKEWTAWDIARRAAFAFFGIFSGTEENPEFLQTGV  171 (241)
Q Consensus        93 ~~Is~~el~~~l-~~~~~~lIDvR~~~Ey~~ghIpGAinip~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  171 (241)
                      ..++.+|+++.+ +.++++|||||++.||..||||||+|+|...+....                              .
T Consensus         2 ~v~S~~~l~~~l~~~~~~~liDvR~~~e~~~ghIpgAi~~~~~~~~~~~------------------------------~   51 (101)
T d1yt8a2           2 AVRTFHDIRAALLARRELALLDVREEDPFAQAHPLFAANLPLSRLELEI------------------------------H   51 (101)
T ss_dssp             EEECHHHHHHHHHHTCCBEEEECSCHHHHTTSBCTTCEECCGGGHHHHH------------------------------H
T ss_pred             CcCcHHHHHHHHHCCCCeEEEECCCHHHHHhccCCCcccccccchhhhh------------------------------h
Confidence            457889999876 455899999999999999999999999998765421                              1


Q ss_pred             hcCCCCCCeEEEEcCCCCCCCCCCCCCCchhhHHHHHHHHHHHcCCcceeEccccHHHHHhCCC
Q 026264          172 ESQLDKDAKIIVACATGGTMKPSQNLPEGQQSRSLIAAYLLVLNGYKNVYHLEGGLYKWFKEEL  235 (241)
Q Consensus       172 ~~~i~~~~~IVvyC~~G~~~~~~~~~~~~~~~rs~~aa~~L~~~Gy~nV~~l~GG~~~W~~~g~  235 (241)
                      .....++++||+||.+|.              +|..++..|.++||+||++|+||+.+|+++|.
T Consensus        52 ~~~~~~~~~vv~~~~~g~--------------~s~~~~~~l~~~G~~nV~~l~GG~~~W~~aGg  101 (101)
T d1yt8a2          52 ARVPRRDTPITVYDDGEG--------------LAPVAAQRLHDLGYSDVALLDGGLSGWRNAGG  101 (101)
T ss_dssp             HHSCCTTSCEEEECSSSS--------------HHHHHHHHHHHTTCSSEEEETTHHHHHHHTTC
T ss_pred             hcccccCceeeeccchhh--------------hHHHHHHHHHHcCCCcEEEeCChHHHHHHCcC
Confidence            233567789999999998              99999999999999999999999999999873

>d1rhsa2 c.46.1.2 (A:150-293) Rhodanese {Cow (Bos taurus) [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: Rhodanese/Cell cycle control phosphatase
superfamily: Rhodanese/Cell cycle control phosphatase
family: Multidomain sulfurtransferase (rhodanese)
domain: Rhodanese
species: Cow (Bos taurus) [TaxId: 9913]

Probab=99.89  E-value=1.2e-23  Score=167.95  Aligned_cols=116  Identities=21%  Similarity=0.352  Sum_probs=96.1

Q ss_pred             cccHHHHHHHhcCCCeEEEEcCChhhhh------------hCCCCCCeeechhhHHhhhhhHHHHHHhhhhhccccCCCC
Q 026264           94 SVEAKEALRLQKENNFVILDVRPEAEFK------------EAHPPGAINVQIYRLIKEWTAWDIARRAAFAFFGIFSGTE  161 (241)
Q Consensus        94 ~Is~~el~~~l~~~~~~lIDvR~~~Ey~------------~ghIpGAinip~~~l~~~~~~~~~~~~~~~~~~~~~~~~~  161 (241)
                      .++.+|+++.+++++++|||+|++.||.            .||||||+|+|+..+.+..                  +.-
T Consensus        12 i~~~~ev~~~l~~~~~~iiD~R~~~ef~G~~~~~~~~~~~~GhIpgA~~ip~~~~~~~~------------------~~~   73 (144)
T d1rhsa2          12 LKTYEQVLENLESKRFQLVDSRAQGRYLGTQPEPDAVGLDSGHIRGSVNMPFMNFLTED------------------GFE   73 (144)
T ss_dssp             EECHHHHHHHHHHCCSEEEECSCHHHHHTSSCCSSSSSCCCCEETTCEECCGGGGBCTT------------------SCB
T ss_pred             eecHHHHHHHhcCCCcEEEECCCCHHHcCCCCCCccccceeeehhhhhhcchhhhhhhh------------------ccc
Confidence            5889999999998899999999999995            6999999999998875421                  111


Q ss_pred             CChHHHhh-hhhcCCCCCCeEEEEcCCCCCCCCCCCCCCchhhHHHHHHHHHHHcCCcceeEccccHHHHHhCC---CCc
Q 026264          162 ENPEFLQT-GVESQLDKDAKIIVACATGGTMKPSQNLPEGQQSRSLIAAYLLVLNGYKNVYHLEGGLYKWFKEE---LPE  237 (241)
Q Consensus       162 ~~~~~~~~-~~~~~i~~~~~IVvyC~~G~~~~~~~~~~~~~~~rs~~aa~~L~~~Gy~nV~~l~GG~~~W~~~g---~p~  237 (241)
                      ..++.+++ +...+++++++||+||++|.              ||..+++.|..+||+||++|+|||.+|...+   .||
T Consensus        74 ~~~~~l~~~~~~~gi~~~~~iI~yC~sG~--------------~A~~~~~~l~~lG~~~v~~YdGsw~eW~~~~~p~~pV  139 (144)
T d1rhsa2          74 KSPEELRAMFEAKKVDLTKPLIATCRKGV--------------TACHIALAAYLCGKPDVAIYDGSWFEWFHRAPPETWV  139 (144)
T ss_dssp             CCHHHHHHHHHHTTCCTTSCEEEECSSSS--------------THHHHHHHHHHTTCCCCEEESSHHHHHHHHSCGGGEE
T ss_pred             CCHHHHHHHHHHcCCCCCCCEEEEecccc--------------hHHHHHHHHHHcCCCCCEEeCCCHHHHhhcCCCCCCc
Confidence            23433333 23468899999999999998              9999999999999999999999999998765   678


Q ss_pred             ccCC
Q 026264          238 VSEE  241 (241)
Q Consensus       238 ~~g~  241 (241)
                      ++|+
T Consensus       140 ~~G~  143 (144)
T d1rhsa2         140 SQGK  143 (144)
T ss_dssp             BTTB
T ss_pred             CCCC
Confidence            8775

>d1uara2 c.46.1.2 (A:145-285) Sulfurtransferase {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: Rhodanese/Cell cycle control phosphatase
superfamily: Rhodanese/Cell cycle control phosphatase
family: Multidomain sulfurtransferase (rhodanese)
domain: Sulfurtransferase
species: Thermus thermophilus [TaxId: 274]

Probab=99.89  E-value=2.9e-23  Score=165.12  Aligned_cols=108  Identities=28%  Similarity=0.391  Sum_probs=87.2

Q ss_pred             HHhcCCCeEEEEcCChhhhh----------------hCCCCCCeeechhhHHhhhhhHHHHHHhhhhhccccCCCCCChH
Q 026264          102 RLQKENNFVILDVRPEAEFK----------------EAHPPGAINVQIYRLIKEWTAWDIARRAAFAFFGIFSGTEENPE  165 (241)
Q Consensus       102 ~~l~~~~~~lIDvR~~~Ey~----------------~ghIpGAinip~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  165 (241)
                      ..+++++.+|||+|++.||.                .||||||+|+|+..+.+..                  +...+++
T Consensus        14 ~~~~~~~~~lvD~R~~~ey~G~~~~~~~~~~~~~~r~GhIpgA~nlp~~~~~~~~------------------~~~~~~~   75 (141)
T d1uara2          14 IKVKEGKGALVDVRSPQEYRGELTHMPDYPQEGALRAGHIPGAKNIPWAKAVNPD------------------GTFKSAE   75 (141)
T ss_dssp             HHHHTTSEEEEECSCHHHHHTCC--------CCCSCCSBCTTCEECCGGGGBCTT------------------SCBCCHH
T ss_pred             HHhhCCCcEEEeCCCHHHcCCccCcccccCcccceeeeEeCCccccccccccccc------------------cccccHH
Confidence            33456689999999999996                7999999999998875421                  1122333


Q ss_pred             HHh-hhhhcCCCCCCeEEEEcCCCCCCCCCCCCCCchhhHHHHHHHHHHH-cCCcceeEccccHHHHHh-CCCCcccCC
Q 026264          166 FLQ-TGVESQLDKDAKIIVACATGGTMKPSQNLPEGQQSRSLIAAYLLVL-NGYKNVYHLEGGLYKWFK-EELPEVSEE  241 (241)
Q Consensus       166 ~~~-~~~~~~i~~~~~IVvyC~~G~~~~~~~~~~~~~~~rs~~aa~~L~~-~Gy~nV~~l~GG~~~W~~-~g~p~~~g~  241 (241)
                      .++ .+...+++++++||+||++|.              +|..+++.|.. +||+||++|+|||.+|.. .++|+++||
T Consensus        76 ~~~~~~~~~gi~~d~~vV~yC~~G~--------------~As~~~~~l~~~~G~~~v~~ydGs~~eW~~~~~~Pv~~g~  140 (141)
T d1uara2          76 ELRALYEPLGITKDKDIVVYCRIAE--------------RSSHSWFVLKYLLGYPHVKNYDGSWTEWGNLVGVPIAKGE  140 (141)
T ss_dssp             HHHHHHGGGTCCTTSEEEEECSSHH--------------HHHHHHHHHHTTSCCSCEEEESSHHHHHTTSTTCCCBCSC
T ss_pred             HHHHHHHHhCCCCCCeEEEEecCcc--------------hHHHHHHHHHHHcCCCCeeEeCCcHHHHhcCCCCCcccCC
Confidence            333 334568999999999999997              99999999985 899999999999999966 699999996

>d1rhsa1 c.46.1.2 (A:1-149) Rhodanese {Cow (Bos taurus) [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: Rhodanese/Cell cycle control phosphatase
superfamily: Rhodanese/Cell cycle control phosphatase
family: Multidomain sulfurtransferase (rhodanese)
domain: Rhodanese
species: Cow (Bos taurus) [TaxId: 9913]

Probab=99.88  E-value=5e-23  Score=164.98  Aligned_cols=125  Identities=20%  Similarity=0.249  Sum_probs=96.0

Q ss_pred             ccccHHHHHHHhcC----CCeEEEEcC--------ChhhhhhCCCCCCeeechhhHHhhhhhHHHHHHhhhhhccccCCC
Q 026264           93 RSVEAKEALRLQKE----NNFVILDVR--------PEAEFKEAHPPGAINVQIYRLIKEWTAWDIARRAAFAFFGIFSGT  160 (241)
Q Consensus        93 ~~Is~~el~~~l~~----~~~~lIDvR--------~~~Ey~~ghIpGAinip~~~l~~~~~~~~~~~~~~~~~~~~~~~~  160 (241)
                      ..|++++|.+.+++    ++++|||||        ...+|.+||||||+|+++..+.....          ...+.+   
T Consensus         8 ~lVs~~wL~~~L~~~~~~~~~~IiD~r~~~~~~~~~~~~y~~gHIPGAv~~~~~~~~~~~~----------~~~~~~---   74 (149)
T d1rhsa1           8 ALVSTKWLAESVRAGKVGPGLRVLDASWYSPGTREARKEYLERHVPGASFFDIEECRDKAS----------PYEVML---   74 (149)
T ss_dssp             SEECHHHHHHHHHTTCCBTTEEEEECCCCCTTSCCHHHHHHHSBCTTCEECCTTTSSCTTS----------SSSSCC---
T ss_pred             CccCHHHHHHHHhccCCCCCEEEEEecCcCCCCcchHHHHHHhcccCceeccHHhhccccc----------chhhhh---
Confidence            35899999999873    479999999        45789999999999999876543210          011111   


Q ss_pred             CCChHHHhhhhhcCCCCCCeEEEEcCCCCCCCCCCCCCCchhhHHHHHHHHHHHcCCcceeEccccHHHHHhCCCCcccC
Q 026264          161 EENPEFLQTGVESQLDKDAKIIVACATGGTMKPSQNLPEGQQSRSLIAAYLLVLNGYKNVYHLEGGLYKWFKEELPEVSE  240 (241)
Q Consensus       161 ~~~~~~~~~~~~~~i~~~~~IVvyC~~G~~~~~~~~~~~~~~~rs~~aa~~L~~~Gy~nV~~l~GG~~~W~~~g~p~~~g  240 (241)
                      .....|.+.+...+++++++|||||.....     +      ..+.++++.|+.+||+||++|+||+.+|+++|+|++++
T Consensus        75 ~~~~~~~~~l~~~Gi~~~~~vVvy~~~~~~-----~------~~a~r~~w~L~~~G~~~V~vLdGG~~~W~~~G~pv~~~  143 (149)
T d1rhsa1          75 PSEAGFADYVGSLGISNDTHVVVYDGDDLG-----S------FYAPRVWWMFRVFGHRTVSVLNGGFRNWLKEGHPVTSE  143 (149)
T ss_dssp             CCHHHHHHHHHHTTCCTTCEEEEECCCSSS-----C------SSHHHHHHHHHHTTCCCEEEETTHHHHHHHTTCCCBCS
T ss_pred             hhhHHHHHHHhhhhccCCceeEEeeccCCc-----c------hhhhHHHHHHHHcCCCceEEeCCcHHHHHHCcCcccCC
Confidence            223345555566889999999999975210     0      27889999999999999999999999999999999886


Q ss_pred             C
Q 026264          241 E  241 (241)
Q Consensus       241 ~  241 (241)
                      .
T Consensus       144 ~  144 (149)
T d1rhsa1         144 P  144 (149)
T ss_dssp             C
T ss_pred             C
Confidence            3

>d1yt8a4 c.46.1.2 (A:243-372) Thiosulfate sulfurtransferase PA2603 {Pseudomonas aeruginosa [TaxId: 287]}

class: Alpha and beta proteins (a/b)
fold: Rhodanese/Cell cycle control phosphatase
superfamily: Rhodanese/Cell cycle control phosphatase
family: Multidomain sulfurtransferase (rhodanese)
domain: Thiosulfate sulfurtransferase PA2603
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=99.88  E-value=1.3e-22  Score=158.67  Aligned_cols=104  Identities=23%  Similarity=0.264  Sum_probs=89.5

Q ss_pred             HhhhccccccHHHHHHHhcCC--CeEEEEcCChhhhhhCCCCCCeeechhhHHhhhhhHHHHHHhhhhhccccCCCCCCh
Q 026264           87 LLQKRVRSVEAKEALRLQKEN--NFVILDVRPEAEFKEAHPPGAINVQIYRLIKEWTAWDIARRAAFAFFGIFSGTEENP  164 (241)
Q Consensus        87 l~~~~~~~Is~~el~~~l~~~--~~~lIDvR~~~Ey~~ghIpGAinip~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~  164 (241)
                      .....++.|+++++.++++++  +++|||||++.||..||||||+|+|+..+....                        
T Consensus        17 ~~~~~~~~I~~~e~~~~l~~~~~~~~liDvR~~~e~~~ghipgai~~p~~~~~~~~------------------------   72 (130)
T d1yt8a4          17 ADRAGVERLDLAGLAQWQDEHDRTTYLLDVRTPEEYEAGHLPGSRSTPGGQLVQET------------------------   72 (130)
T ss_dssp             HHHHTCEEECHHHHHHHHHCTTSCEEEEECSCHHHHHHCBCTTCEECCHHHHHHSH------------------------
T ss_pred             HHHcCCcccCHHHHHHHHHccCCCEEEEECCCcHHHhcCccCCccccccccccccc------------------------
Confidence            344678999999999999754  589999999999999999999999998876521                        


Q ss_pred             HHHhhhhhcCCCCCCeEEEEcCCCCCCCCCCCCCCchhhHHHHHHHHHHHcCCcceeEccccHHHHHhCCC
Q 026264          165 EFLQTGVESQLDKDAKIIVACATGGTMKPSQNLPEGQQSRSLIAAYLLVLNGYKNVYHLEGGLYKWFKEEL  235 (241)
Q Consensus       165 ~~~~~~~~~~i~~~~~IVvyC~~G~~~~~~~~~~~~~~~rs~~aa~~L~~~Gy~nV~~l~GG~~~W~~~g~  235 (241)
                            .....+++++||+||.+|.              ||..++..|+++|| +|++|+||+.+|..++.
T Consensus        73 ------~~~~~~~~~~ivl~C~~G~--------------rS~~aa~~L~~~G~-~v~~l~GG~~aw~~~~g  122 (130)
T d1yt8a4          73 ------DHVASVRGARLVLVDDDGV--------------RANMSASWLAQMGW-QVAVLDGLSEADFSERG  122 (130)
T ss_dssp             ------HHHCCSBTCEEEEECSSSS--------------HHHHHHHHHHHTTC-EEEEECSCCGGGCCBCS
T ss_pred             ------ccccCCccceEEeecCCCc--------------cHHHHHHHHHHcCC-CeEEEcCchHHHHHhcC
Confidence                  1235678899999999987              99999999999999 69999999999987753

>d1t3ka_ c.46.1.1 (A:) Dual specificity phosphatase Cdc25 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Alpha and beta proteins (a/b)
fold: Rhodanese/Cell cycle control phosphatase
superfamily: Rhodanese/Cell cycle control phosphatase
family: Cell cycle control phosphatase, catalytic domain
domain: Dual specificity phosphatase Cdc25
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=99.87  E-value=1.6e-23  Score=163.93  Aligned_cols=110  Identities=21%  Similarity=0.309  Sum_probs=90.1

Q ss_pred             hccccccHHHHHHHhcCCCeEEEEcCChhhhhhCCCCCCeeechhhHHhhhhhHHHHHHhhhhhccccCCCCCChHHHhh
Q 026264           90 KRVRSVEAKEALRLQKENNFVILDVRPEAEFKEAHPPGAINVQIYRLIKEWTAWDIARRAAFAFFGIFSGTEENPEFLQT  169 (241)
Q Consensus        90 ~~~~~Is~~el~~~l~~~~~~lIDvR~~~Ey~~ghIpGAinip~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  169 (241)
                      ..++.|+++|+.+++++++++|||||++.||..||||||+|+|+..+...                       .+++   
T Consensus         5 ~~v~~I~~~el~~~~~~~~v~iIDvR~~~e~~~ghIpgAinip~~~~~~~-----------------------~~~~---   58 (132)
T d1t3ka_           5 RSISYITSTQLLPLHRRPNIAIIDVRDEERNYDGHIAGSLHYASGSFDDK-----------------------ISHL---   58 (132)
T ss_dssp             SSSEEECTTTTTTCCCCTTEEEEEESCSHHHHSSCCCSSEEECCSSSSTT-----------------------HHHH---
T ss_pred             cCCCEECHHHHHHHHhCCCeEEEEccCHHHHHhccCcccceeeeeccccc-----------------------cccc---
Confidence            45788999999999998899999999999999999999999999765431                       1222   


Q ss_pred             hhhcCCCCCCeEEEEcCCCCCCCCCCCCCCchhhHHHHHHHHHH--------HcCCcceeEccccHHHHHhCCCCcccC
Q 026264          170 GVESQLDKDAKIIVACATGGTMKPSQNLPEGQQSRSLIAAYLLV--------LNGYKNVYHLEGGLYKWFKEELPEVSE  240 (241)
Q Consensus       170 ~~~~~i~~~~~IVvyC~~G~~~~~~~~~~~~~~~rs~~aa~~L~--------~~Gy~nV~~l~GG~~~W~~~g~p~~~g  240 (241)
                        .....+++.||+||..|..             |+..++..|.        ..||+||++|+||+.+|.++|+|+.++
T Consensus        59 --~~~~~~~~~iv~~c~~~~~-------------~~~~aa~~l~~~~~~~l~~~G~~~v~~l~GG~~~W~~~g~pv~~~  122 (132)
T d1t3ka_          59 --VQNVKDKDTLVFHSALSQV-------------RGPTCARRLVNYLDEKKEDTGIKNIMILERGFNGWEASGKPVCRC  122 (132)
T ss_dssp             --HHTCCSCCEEEESSSCCSS-------------SHHHHHHHHHHHHHHSSSCCCSSEEEEESSTTHHHHHHSCSSCCC
T ss_pred             --ccccccccceEEEeccccc-------------cchHHHHHHHHHHHHHHHhcCCCEEEEeCChHHHHHHcCCCcccC
Confidence              2346778899999988763             6665555544        469999999999999999999999865

>d1urha2 c.46.1.2 (A:149-268) 3-mercaptopyruvate sulfurtransferase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Rhodanese/Cell cycle control phosphatase
superfamily: Rhodanese/Cell cycle control phosphatase
family: Multidomain sulfurtransferase (rhodanese)
domain: 3-mercaptopyruvate sulfurtransferase
species: Escherichia coli [TaxId: 562]

Probab=99.84  E-value=1.9e-21  Score=148.91  Aligned_cols=104  Identities=30%  Similarity=0.463  Sum_probs=85.8

Q ss_pred             cccHHHHHHHhcCCCeEEEEcCChhhhh-----------hCCCCCCeeechhhHHhhhhhHHHHHHhhhhhccccCCCCC
Q 026264           94 SVEAKEALRLQKENNFVILDVRPEAEFK-----------EAHPPGAINVQIYRLIKEWTAWDIARRAAFAFFGIFSGTEE  162 (241)
Q Consensus        94 ~Is~~el~~~l~~~~~~lIDvR~~~Ey~-----------~ghIpGAinip~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~  162 (241)
                      .++.+|++..+++++++|||+|++.||.           .||||||+|+|+..+...                   +...
T Consensus         5 ~~~~~ev~~~~~~~~~~liD~R~~~~f~G~~~~~~~~~~~G~Ipga~~~~~~~~~~~-------------------~~~~   65 (120)
T d1urha2           5 VVKVTDVLLASHENTAQIIDARPAARFNAEVDEPRPGLRRGHIPGALNVPWTELVRE-------------------GELK   65 (120)
T ss_dssp             BCCHHHHHHHHHHTCSEEEECSCHHHHSSCCCC----CCSSSCTTCEECCGGGGBSS-------------------SSBC
T ss_pred             HccHHHHHHHhhCCCcEEEeCCCHHHcCcccCCcccccccccccccchhchhhcccc-------------------cccC
Confidence            4788999999998899999999999995           799999999998765432                   1112


Q ss_pred             Ch-HHHhhhhhcCCCCCCeEEEEcCCCCCCCCCCCCCCchhhHHHHHHHHHHHcCCcceeEccccHHHH
Q 026264          163 NP-EFLQTGVESQLDKDAKIIVACATGGTMKPSQNLPEGQQSRSLIAAYLLVLNGYKNVYHLEGGLYKW  230 (241)
Q Consensus       163 ~~-~~~~~~~~~~i~~~~~IVvyC~~G~~~~~~~~~~~~~~~rs~~aa~~L~~~Gy~nV~~l~GG~~~W  230 (241)
                      .+ ++.+.+...+++++++||+||++|.              ||..+++.|+.+||+||++|+|||.+|
T Consensus        66 ~~~~~~~~~~~~g~~~~~~ii~yC~sG~--------------~A~~~~~~L~~lG~~~v~~y~Gs~~eW  120 (120)
T d1urha2          66 TTDELDAIFFGRGVSYDKPIIVSCGSGV--------------TAAVVLLALATLDVPNVKLYDGAWSEW  120 (120)
T ss_dssp             CHHHHHHHHHTTTCCSSSCEEEECCSSS--------------THHHHHHHHHHTTCSSCEEECCSCCC-
T ss_pred             CHHHhhhhhhhcccCccCceEEEccchh--------------HHHHHHHHHHHcCCCCceEcCCChhhC
Confidence            22 3333334568899999999999998              999999999999999999999999998

>d1okga1 c.46.1.2 (A:7-162) 3-mercaptopyruvate sulfurtransferase {Leishmania major [TaxId: 5664]}

class: Alpha and beta proteins (a/b)
fold: Rhodanese/Cell cycle control phosphatase
superfamily: Rhodanese/Cell cycle control phosphatase
family: Multidomain sulfurtransferase (rhodanese)
domain: 3-mercaptopyruvate sulfurtransferase
species: Leishmania major [TaxId: 5664]

Probab=99.83  E-value=3.8e-21  Score=155.29  Aligned_cols=123  Identities=15%  Similarity=0.164  Sum_probs=93.9

Q ss_pred             cccHHHHHHHhcCCCeEEEEcC--------ChhhhhhCCCCCCeeechhhHHhhhhhHHHHHHhhhhhccccCCCCCChH
Q 026264           94 SVEAKEALRLQKENNFVILDVR--------PEAEFKEAHPPGAINVQIYRLIKEWTAWDIARRAAFAFFGIFSGTEENPE  165 (241)
Q Consensus        94 ~Is~~el~~~l~~~~~~lIDvR--------~~~Ey~~ghIpGAinip~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  165 (241)
                      .|+++||.+.++  ++.|||||        .+.+|.+||||||++++++.........          .....-.+...+
T Consensus         9 lvs~~~L~~~l~--d~~iiD~r~~l~~~~~g~~~Y~~gHIPGA~~~d~~~~l~~~~~~----------~~~~~~lP~~~~   76 (156)
T d1okga1           9 FLDPSEVADHLA--EYRIVDCRYSLKIKDHGSIQYAKEHVKSAIRADVDTNLSKLVPT----------STARHPLPPCAE   76 (156)
T ss_dssp             EECHHHHTTCGG--GSEEEECCCCSSSTTTTTTHHHHCEETTCEECCTTTTSCCCCTT----------CCCSSCCCCHHH
T ss_pred             EeCHHHHHHhcC--CCEEEEeeccCCCCcchHHHHHHcCCCCCeEcCHHHhcccccCC----------CCCccccCCHHH
Confidence            599999998886  59999999        4688999999999999986543211000          000001223456


Q ss_pred             HHhhhhhcCCCCCCeEEEEcCCCCCCCCCCCCCCchhhHHHHHHHHHHHcCCcceeEccccHHHHHhCCCCcccCC
Q 026264          166 FLQTGVESQLDKDAKIIVACATGGTMKPSQNLPEGQQSRSLIAAYLLVLNGYKNVYHLEGGLYKWFKEELPEVSEE  241 (241)
Q Consensus       166 ~~~~~~~~~i~~~~~IVvyC~~G~~~~~~~~~~~~~~~rs~~aa~~L~~~Gy~nV~~l~GG~~~W~~~g~p~~~g~  241 (241)
                      |.+.+...+|+++++||+||+.++.            ..|.+++|.|+.+|+ ||++|+||+.+|+++|+|+++++
T Consensus        77 ~~~~l~~lGI~~~~~VVvYd~~~g~------------~~A~R~~w~L~~~G~-~v~iLdGG~~aW~~~G~pv~t~~  139 (156)
T d1okga1          77 FIDWCMANGMAGELPVLCYDDECGA------------MGGCRLWWMLNSLGA-DAYVINGGFQACKAAGLEMESGE  139 (156)
T ss_dssp             HHHHHHHTTCSSSSCEEEECSSTTT------------TTHHHHHHHHHHHTC-CEEEETTTTHHHHTTTCCEECSC
T ss_pred             HHHHHHhccccCCceEEEEeCCCCc------------hHHHHHHHHHHHcCC-eeEEeCCCHHHHHHCCCCCCCCC
Confidence            6666566899999999999966431            278999999999997 79999999999999999998874

>d1okga2 c.46.1.2 (A:163-301) 3-mercaptopyruvate sulfurtransferase {Leishmania major [TaxId: 5664]}

class: Alpha and beta proteins (a/b)
fold: Rhodanese/Cell cycle control phosphatase
superfamily: Rhodanese/Cell cycle control phosphatase
family: Multidomain sulfurtransferase (rhodanese)
domain: 3-mercaptopyruvate sulfurtransferase
species: Leishmania major [TaxId: 5664]

Probab=99.81  E-value=4.1e-21  Score=152.01  Aligned_cols=105  Identities=16%  Similarity=0.210  Sum_probs=77.9

Q ss_pred             CCeEEEEcCChhhhh-----------hCCCCCCeeechhhHHhhhhhHHHHHHhhhhhccccCCCCCChHHHhhhh----
Q 026264          107 NNFVILDVRPEAEFK-----------EAHPPGAINVQIYRLIKEWTAWDIARRAAFAFFGIFSGTEENPEFLQTGV----  171 (241)
Q Consensus       107 ~~~~lIDvR~~~Ey~-----------~ghIpGAinip~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----  171 (241)
                      ++++|||+|++.||.           .||||||+|+|+..+......               ......++.+.+..    
T Consensus        11 p~~vlvD~R~~~ef~G~~~~~~~~~~~GHIpgAvnip~~~~~~~~~~---------------~~~~~~~~~l~~~~~~~~   75 (139)
T d1okga2          11 PQAIITDARSADRFASTVRPYAADKMPGHIEGARNLPYTSHLVTRGD---------------GKVLRSEEEIRHNIMTVV   75 (139)
T ss_dssp             TTCCEEECSCHHHHTCCSSCCTTCSSSSCSTTCEECCGGGGEECCSS---------------SCEECCHHHHHHHHHTTC
T ss_pred             CCeEEEeCCCHHHhCCcCCCcccCCcCceeCCCeeccchhhcccccc---------------ccccCCHHHhhhhhhhhh
Confidence            589999999999997           799999999999865432100               00011222221101    


Q ss_pred             --hcCCCCCCeEEEEcCCCCCCCCCCCCCCchhhHHHHHHHHHHHcCCcceeEccccHHHHHh-CCCCcccC
Q 026264          172 --ESQLDKDAKIIVACATGGTMKPSQNLPEGQQSRSLIAAYLLVLNGYKNVYHLEGGLYKWFK-EELPEVSE  240 (241)
Q Consensus       172 --~~~i~~~~~IVvyC~~G~~~~~~~~~~~~~~~rs~~aa~~L~~~Gy~nV~~l~GG~~~W~~-~g~p~~~g  240 (241)
                        ...+.++++||+||++|.              +|+.+++.|+.+||+||++|+|||.+|.. .++|+++|
T Consensus        76 ~~~~~~~~~~~vV~yC~sG~--------------~Aa~~~~~L~~~G~~~v~vydGsw~eW~~~~~~Pv~~~  133 (139)
T d1okga2          76 QGAGDAADLSSFVFSCGSGV--------------TACINIALVHHLGLGHPYLYCGSWSEYSGLFRPPIMRS  133 (139)
T ss_dssp             C-----CCCTTSEEECSSSS--------------THHHHHHHHHHTTSCCCEECSSHHHHHHHHTHHHHHHH
T ss_pred             hhccCCCCCCeEEEECCCcH--------------HHHHHHHHHHHhCCCCccCCCCCHHHHhCCCCCCeeec
Confidence              124677889999999998              99999999999999999999999999965 68999875

>d1c25a_ c.46.1.1 (A:) CDC25a {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Rhodanese/Cell cycle control phosphatase
superfamily: Rhodanese/Cell cycle control phosphatase
family: Cell cycle control phosphatase, catalytic domain
domain: CDC25a
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.78  E-value=4.3e-19  Score=143.50  Aligned_cols=106  Identities=19%  Similarity=0.377  Sum_probs=81.2

Q ss_pred             ccccccHHHHHHHhcCC------CeEEEEcCChhhhhhCCCCCCeeechhhHHhhhhhHHHHHHhhhhhccccCCCCCCh
Q 026264           91 RVRSVEAKEALRLQKEN------NFVILDVRPEAEFKEAHPPGAINVQIYRLIKEWTAWDIARRAAFAFFGIFSGTEENP  164 (241)
Q Consensus        91 ~~~~Is~~el~~~l~~~------~~~lIDvR~~~Ey~~ghIpGAinip~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~  164 (241)
                      .++.|+++++.+++++.      +++|||||++.||..||||||+|+|..+...+.                        
T Consensus        21 ~~k~Is~~~l~~ll~~~~~~~~~~~~IIDvR~~~Ey~~gHI~gAinip~~~~~~~~------------------------   76 (161)
T d1c25a_          21 DLKYISPEIMASVLNGKFANLIKEFVIIDCRYPYEYEGGHIKGAVNLHMEEEVEDF------------------------   76 (161)
T ss_dssp             TSCEECHHHHHHHHTTTTTTTEEEEEEEECSCHHHHHTCEETTCEECCSHHHHHHH------------------------
T ss_pred             CCCccCHHHHHHHHhhhhhcccCCEEEEECCCHHHHHhhhcCCcEEcCcHHHHHHH------------------------
Confidence            45789999999998742      689999999999999999999999976654321                        


Q ss_pred             HHHhhhhhcCCCCCCeEEEEcCCCCCCCCCCCCCCchhhHHHHHHHHHHHc----------CCcceeEccccHHHHHhCC
Q 026264          165 EFLQTGVESQLDKDAKIIVACATGGTMKPSQNLPEGQQSRSLIAAYLLVLN----------GYKNVYHLEGGLYKWFKEE  234 (241)
Q Consensus       165 ~~~~~~~~~~i~~~~~IVvyC~~G~~~~~~~~~~~~~~~rs~~aa~~L~~~----------Gy~nV~~l~GG~~~W~~~g  234 (241)
                       +.+........++..||+||..++             .|+..++..|+..          ||++|++|+|||.+|.+..
T Consensus        77 -l~~~~~~~~~~~~~~vV~yc~~s~-------------~rs~~~a~~l~~~~~~~~~~~~~g~~~V~vL~GG~~~w~~~~  142 (161)
T d1c25a_          77 -LLKKPIVPTDGKRVIVVFHCEFSS-------------ERGPRMCRYVRERDRLGNEYPKLHYPELYVLKGGYKEFFMKC  142 (161)
T ss_dssp             -TTTSCCCCCTTSEEEEEEECSSSS-------------SHHHHHHHHHHHHHHHTSSTTCCSSCCEEEETTHHHHHHHHH
T ss_pred             -HhhhhhhhhhccCCeEEEEecccc-------------ccHHHHHHHHHHHHHhhccccccCCCeEEEECCcHHHHHHHC
Confidence             111101122345567899998544             2999999998764          9999999999999998753

>d2gwfa1 c.46.1.4 (A:181-315) Ubiquitin carboxyl-terminal hydrolase 8, USP8 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Rhodanese/Cell cycle control phosphatase
superfamily: Rhodanese/Cell cycle control phosphatase
family: Ubiquitin carboxyl-terminal hydrolase 8, USP8
domain: Ubiquitin carboxyl-terminal hydrolase 8, USP8
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.73  E-value=7.6e-18  Score=130.74  Aligned_cols=119  Identities=14%  Similarity=0.107  Sum_probs=81.0

Q ss_pred             cccHHHHHHHhcCC--CeEEEEcCChhhhhhCCCCCCeeechhhHHhhhhhHHHHHHhhhhhccccCCCCCChHHHhhhh
Q 026264           94 SVEAKEALRLQKEN--NFVILDVRPEAEFKEAHPPGAINVQIYRLIKEWTAWDIARRAAFAFFGIFSGTEENPEFLQTGV  171 (241)
Q Consensus        94 ~Is~~el~~~l~~~--~~~lIDvR~~~Ey~~ghIpGAinip~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  171 (241)
                      .|+++||.++++++  +++|||||++.||..||||||+|||...+........+..              ..+..... .
T Consensus         2 ~Is~~eL~~~l~~~~~~~liiDvR~~~ey~~~hI~gAinip~~~l~~~~~~~~l~~--------------~~~~~~~~-~   66 (135)
T d2gwfa1           2 AITAKELYTMMTDKNISLIIMDARRMQDYQDSCILHSLSVPEEAISPGVTASWIEA--------------HLPDDSKD-T   66 (135)
T ss_dssp             EECHHHHHHHHHSTTSCEEEEECSCHHHHHHSCBTTCEECCGGGCCTTCCHHHHHH--------------TSCHHHHH-H
T ss_pred             eECHHHHHHHHhcCCCCEEEEEecCCccccCCccCCeEEeCHHHcccccchhhhhh--------------hhhHHHHH-H
Confidence            58999999999764  5999999999999999999999999987754221111110              00111111 2


Q ss_pred             hcCCCCCCeEEEEcCCCCCCCCCCCCCCchhhHHHHHHHHHHH-----cCCcceeEccccHHHHHhC
Q 026264          172 ESQLDKDAKIIVACATGGTMKPSQNLPEGQQSRSLIAAYLLVL-----NGYKNVYHLEGGLYKWFKE  233 (241)
Q Consensus       172 ~~~i~~~~~IVvyC~~G~~~~~~~~~~~~~~~rs~~aa~~L~~-----~Gy~nV~~l~GG~~~W~~~  233 (241)
                      .......+.||+||..+....|....      ........|..     .|..+|++|+|||.+|...
T Consensus        67 ~~~~~~~~~iV~yd~~s~~~~~~~~~------~~~~~~~~l~~~~~~~~~~~~v~iL~GG~~~w~~~  127 (135)
T d2gwfa1          67 WKKRGNVEYVVLLDWFSSAKDLQIGT------TLRSLKDALFKWESKTVLRNEPLVLEGGYENWLLC  127 (135)
T ss_dssp             HHTTTTSSEEEEECSSCCGGGCCTTC------HHHHHHHHHHTSCCSSCCSSCCEEETTHHHHHHHH
T ss_pred             HhccCCCCeEEEEeCCCCcccHHHHH------HHHHHHHHHhcccccccCCCcEEEEechHHHHHHh
Confidence            23456778999999998743332221      22334444543     4678899999999999987

>d1ymka1 c.46.1.1 (A:377-550) CDC25b {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Rhodanese/Cell cycle control phosphatase
superfamily: Rhodanese/Cell cycle control phosphatase
family: Cell cycle control phosphatase, catalytic domain
domain: CDC25b
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.73  E-value=3.3e-18  Score=139.87  Aligned_cols=107  Identities=21%  Similarity=0.351  Sum_probs=81.9

Q ss_pred             hccccccHHHHHHHhcCC------CeEEEEcCChhhhhhCCCCCCeeechhhHHhhhhhHHHHHHhhhhhccccCCCCCC
Q 026264           90 KRVRSVEAKEALRLQKEN------NFVILDVRPEAEFKEAHPPGAINVQIYRLIKEWTAWDIARRAAFAFFGIFSGTEEN  163 (241)
Q Consensus        90 ~~~~~Is~~el~~~l~~~------~~~lIDvR~~~Ey~~ghIpGAinip~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~  163 (241)
                      ..++.|+++++.+++++.      +++|||||++.||..|||+||+|+|...+..+...                     
T Consensus        20 ~~~k~Isp~eL~~ll~~~~~~~~~~~lIID~R~~~Ey~~gHI~gAiNi~~~~~~~~~~~---------------------   78 (174)
T d1ymka1          20 QDLKYISPETMVALLTGKFSNIVDKFVIVDCRYPYEYEGGHIKTAVNLPLERDAESFLL---------------------   78 (174)
T ss_dssp             TTSCEECHHHHHHHHTTTTTTTEEEEEEEECSCHHHHHTCEETTCEECCSHHHHHHHHH---------------------
T ss_pred             CCCcEeCHHHHHHHHhhhhhcccCCEEEEECCCchhhhhhhcCCccccCchHHHHHHHH---------------------
Confidence            456789999999999753      58999999999999999999999999876542100                     


Q ss_pred             hHHHhhhhhcCCCCCCeEEEEcCCCCCCCCCCCCCCchhhHHHHHHHHHHH----------cCCcceeEccccHHHHHhC
Q 026264          164 PEFLQTGVESQLDKDAKIIVACATGGTMKPSQNLPEGQQSRSLIAAYLLVL----------NGYKNVYHLEGGLYKWFKE  233 (241)
Q Consensus       164 ~~~~~~~~~~~i~~~~~IVvyC~~G~~~~~~~~~~~~~~~rs~~aa~~L~~----------~Gy~nV~~l~GG~~~W~~~  233 (241)
                         .........+++..||+||..+.             .|+..++..|+.          .||++|++|+|||.+|...
T Consensus        79 ---~~~~~~~~~~~~~~vV~yc~~s~-------------~r~~~~a~~l~~~~~~~~~~~~~g~~~VyiL~GGf~~f~~~  142 (174)
T d1ymka1          79 ---KSPIAPCSLDKRVILIFHCEFSS-------------ERGPRMCRFIRERDRAVNDYPSLYYPEMYILKGGYKEFFPQ  142 (174)
T ss_dssp             ---TTTCCC----CEEEEEEECSSSS-------------SHHHHHHHHHHHHHHHTSSTTCCSCCCEEEETTHHHHHTTT
T ss_pred             ---HhhhhhhhhccCceEEEEeCCCC-------------chHHHHHHHHHHHHHHhhhccccCCceEEEecCcHHHHHHh
Confidence               00001122355677999998765             299999999875          3999999999999999765

>d1hzma_ c.46.1.1 (A:) Erk2 binding domain of Mapk phosphatase mkp-3 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Rhodanese/Cell cycle control phosphatase
superfamily: Rhodanese/Cell cycle control phosphatase
family: Cell cycle control phosphatase, catalytic domain
domain: Erk2 binding domain of Mapk phosphatase mkp-3
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.63  E-value=1.9e-16  Score=125.67  Aligned_cols=126  Identities=17%  Similarity=0.158  Sum_probs=80.7

Q ss_pred             cccHHHHHHHhc--CCCeEEEEcCChhhhhhCCCCCCeeechhhHHhhhhhHHHHHHhhhhhccccCCCCCChHHHhhhh
Q 026264           94 SVEAKEALRLQK--ENNFVILDVRPEAEFKEAHPPGAINVQIYRLIKEWTAWDIARRAAFAFFGIFSGTEENPEFLQTGV  171 (241)
Q Consensus        94 ~Is~~el~~~l~--~~~~~lIDvR~~~Ey~~ghIpGAinip~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  171 (241)
                      .++++++.+.++  +++++|||||++.||.+||||||+|+|+.......        ...... .+.......+..+  .
T Consensus        17 ~~s~e~L~~~l~~~~~~~lilDvR~~~ey~~~HI~gAini~~~~~~~~~--------~~~~~~-~~~~~~~~~~~~~--~   85 (154)
T d1hzma_          17 SKTVAWLNEQLELGNERLLLMDCRPQELYESSHIESAINVAIPGIMLRR--------LQKGNL-PVRALFTRGEDRD--R   85 (154)
T ss_dssp             BSCCCCHHHHHHHCSSSCEEECCSTTHHHHHHTSSSCCCCCCSSHHHHT--------BCCSCC-CTTTTSTTSHHHH--H
T ss_pred             ccCHHHHHHHHhcCCCCEEEEECCCHHHHhcCCCCCCcccCcHHHHhhh--------ccCCcc-cccccCCcHHHHH--H
Confidence            588899999885  34799999999999999999999999987654321        000000 0111111112211  2


Q ss_pred             hcCCCCCCeEEEEcCCCCCCCCCCCCCCchhhHHHHHHHHHHHcCCcceeEccccHHHHHhCCCC
Q 026264          172 ESQLDKDAKIIVACATGGTMKPSQNLPEGQQSRSLIAAYLLVLNGYKNVYHLEGGLYKWFKEELP  236 (241)
Q Consensus       172 ~~~i~~~~~IVvyC~~G~~~~~~~~~~~~~~~rs~~aa~~L~~~Gy~nV~~l~GG~~~W~~~g~p  236 (241)
                      ......++.||+||..|..+..+.    ....+...+...|...|+ +|++|+|||.+|.+. +|
T Consensus        86 ~~~~~~~~~VVvYd~~~~~~~~~~----~~~~~~~~l~~~l~~~~~-~v~iL~GG~~~w~~~-yp  144 (154)
T d1hzma_          86 FTRRCGTDTVVLYDESSSDWNENT----GGESLLGLLLKKLKDEGC-RAFYLEGGFSKFQAE-FS  144 (154)
T ss_dssp             HHHSTTSSCEEECCCSSSSSCSCS----SCCSHHHHHHHHHHHTTC-CCEECCCCHHHHHHH-HC
T ss_pred             HhhcCCCCeEEEEcCCCchhhhhH----HHHHHHHHHHHHHHhcCC-eEEEEeCcHHHHHHH-Ch
Confidence            234566789999999876432111    111255555566666665 799999999999875 44

>d1jl3a_ c.44.1.1 (A:) Arsenate reductase ArsC {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: Phosphotyrosine protein phosphatases I-like
superfamily: Phosphotyrosine protein phosphatases I
family: Low-molecular-weight phosphotyrosine protein phosphatases
domain: Arsenate reductase ArsC
species: Bacillus subtilis [TaxId: 1423]

Probab=89.74  E-value=0.088  Score=38.56  Aligned_cols=39  Identities=15%  Similarity=0.055  Sum_probs=33.9

Q ss_pred             CCeEEEEcCCCCCCCCCCCCCCchhhHHHHHHHHHHHcCCcceeEccccHHH
Q 026264          178 DAKIIVACATGGTMKPSQNLPEGQQSRSLIAAYLLVLNGYKNVYHLEGGLYK  229 (241)
Q Consensus       178 ~~~IVvyC~~G~~~~~~~~~~~~~~~rs~~aa~~L~~~Gy~nV~~l~GG~~~  229 (241)
                      +++|+|.|.+..|             ||.+|..+|+..+-+++.+..+|+..
T Consensus         1 ~K~ILFVC~gN~c-------------RSpmAEai~~~~~~~~~~~~Sag~~~   39 (137)
T d1jl3a_           1 NKIIYFLCTGNSC-------------RSQMAEGWAKQYLGDEWKVYSAGIEA   39 (137)
T ss_dssp             CEEEEEEESSSSS-------------HHHHHHHHHHHHSCTTEEEEEEESSC
T ss_pred             CCEEEEEeCCChh-------------HHHHHHHHHHHhCCCCeeeccccccc
Confidence            4689999999987             99999999999887788888888753

>d1xria_ c.45.1.1 (A:) Putative phosphatase At1g05000 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Alpha and beta proteins (a/b)
fold: (Phosphotyrosine protein) phosphatases II
superfamily: (Phosphotyrosine protein) phosphatases II
family: Dual specificity phosphatase-like
domain: Putative phosphatase At1g05000
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=82.29  E-value=0.44  Score=35.14  Aligned_cols=30  Identities=20%  Similarity=0.396  Sum_probs=21.9

Q ss_pred             CCCCeEEEEcCCCCCCCCCCCCCCchhhHHHHH-HHHHHHcCCc
Q 026264          176 DKDAKIIVACATGGTMKPSQNLPEGQQSRSLIA-AYLLVLNGYK  218 (241)
Q Consensus       176 ~~~~~IVvyC~~G~~~~~~~~~~~~~~~rs~~a-a~~L~~~Gy~  218 (241)
                      ..+.+|+|+|..|.+             |+..+ +..|...|++
T Consensus        90 ~~~~pvlvHC~~Gkd-------------RTG~v~a~~l~~~g~~  120 (151)
T d1xria_          90 EKNHPVLIHCKRGKH-------------RTGCLVGCLRKLQKWC  120 (151)
T ss_dssp             GGGCSEEEECSSSSS-------------HHHHHHHHHHHHTTBC
T ss_pred             CCCCCEEEEcCCCch-------------HHHHHHHHHHHHcCCC
Confidence            356789999999975             77665 4455667875

>d1c4oa2 c.37.1.19 (A:410-583) Nucleotide excision repair enzyme UvrB {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Tandem AAA-ATPase domain
domain: Nucleotide excision repair enzyme UvrB
species: Thermus thermophilus [TaxId: 274]

Probab=81.67  E-value=0.3  Score=37.75  Aligned_cols=41  Identities=17%  Similarity=0.134  Sum_probs=35.0

Q ss_pred             cCCCCCCeEEEEcCCCCCCCCCCCCCCchhhHHHHHHHHHHHcCCcceeEccccHH
Q 026264          173 SQLDKDAKIIVACATGGTMKPSQNLPEGQQSRSLIAAYLLVLNGYKNVYHLEGGLY  228 (241)
Q Consensus       173 ~~i~~~~~IVvyC~~G~~~~~~~~~~~~~~~rs~~aa~~L~~~Gy~nV~~l~GG~~  228 (241)
                      ..+.++.++++||.+-.              .+...+..|.+.|++ +.+|.|++.
T Consensus        26 ~~~~~g~r~lvfc~t~~--------------~~~~l~~~L~~~Gi~-a~~~Hg~~~   66 (174)
T d1c4oa2          26 ERAARGERTLVTVLTVR--------------MAEELTSFLVEHGIR-ARYLHHELD   66 (174)
T ss_dssp             HHHHTTCEEEEECSSHH--------------HHHHHHHHHHHTTCC-EEEECTTCC
T ss_pred             HHHhcCCcEEEEEcchh--------------HHHHHHHHHHhcCCc-eEEEecccc
Confidence            34457889999999976              889999999999995 889999976

>d1npya1 c.2.1.7 (A:103-269) Shikimate 5-dehydrogenase-like protein HI0607 {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Shikimate 5-dehydrogenase-like protein HI0607
species: Haemophilus influenzae [TaxId: 727]

Probab=81.33  E-value=1.3  Score=33.14  Aligned_cols=40  Identities=20%  Similarity=0.286  Sum_probs=31.6

Q ss_pred             hcCCCCCCeEEEEcCCCCCCCCCCCCCCchhhHHHHHHHHHHHcCCcceeEcccc
Q 026264          172 ESQLDKDAKIIVACATGGTMKPSQNLPEGQQSRSLIAAYLLVLNGYKNVYHLEGG  226 (241)
Q Consensus       172 ~~~i~~~~~IVvyC~~G~~~~~~~~~~~~~~~rs~~aa~~L~~~Gy~nV~~l~GG  226 (241)
                      ...++++++|+|+..+|               .+..+++.|.+.|+++|.++.=.
T Consensus        11 ~~~~~~~~~vlIlGaGG---------------aarai~~aL~~~g~~~I~I~nR~   50 (167)
T d1npya1          11 KYHLNKNAKVIVHGSGG---------------MAKAVVAAFKNSGFEKLKIYARN   50 (167)
T ss_dssp             HTTCCTTSCEEEECSST---------------THHHHHHHHHHTTCCCEEEECSC
T ss_pred             HcCCCCCCeEEEECCCH---------------HHHHHHHHHHHCCCCEEEEeccc
Confidence            35677889999997766               46668899999999989887543

>d1ywfa1 c.45.1.5 (A:4-275) Phosphotyrosine protein phosphatase PtpB {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: (Phosphotyrosine protein) phosphatases II
superfamily: (Phosphotyrosine protein) phosphatases II
family: Mycobacterial PtpB-like
domain: Phosphotyrosine protein phosphatase PtpB
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=80.30  E-value=2.2  Score=34.43  Aligned_cols=32  Identities=13%  Similarity=0.181  Sum_probs=22.2

Q ss_pred             hccccccHHHHHHHhcCCCeEEEEcCChhhhh
Q 026264           90 KRVRSVEAKEALRLQKENNFVILDVRPEAEFK  121 (241)
Q Consensus        90 ~~~~~Is~~el~~~l~~~~~~lIDvR~~~Ey~  121 (241)
                      ..+..++.++...+.+-+=..|||.|++.|..
T Consensus        28 ~~l~~lt~~d~~~L~~lgI~tViDLRs~~E~~   59 (272)
T d1ywfa1          28 SELSRLDDAGRATLRRLGITDVADLRSSREVA   59 (272)
T ss_dssp             SCCTTCCHHHHHHHHHHTCCEEEECCCHHHHH
T ss_pred             CCcCcCCHHHHHHHHHCCCcEEEECCCHHHHh
Confidence            44556777776655333346899999999965