Citrus Sinensis ID: 026274
Local Sequence Feature Prediction
| Prediction and (Method) | Result |
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Close Homologs for Annotation Transfer
Close Homologs in SWISS-PROT Database Detected by BLAST 
Original result of BLAST against SWISS-PROT Database
| ID | Alignment graph | Length |
Definition |
RBH(Q2H) |
RBH(H2Q) |
Q cover |
H cover |
Identity |
E-value |
| Query | 241 | 2.2.26 [Sep-21-2011] | |||||||
| Q6DJF8 | 234 | Methyltransferase-like pr | N/A | no | 0.701 | 0.722 | 0.426 | 1e-38 | |
| A2AA28 | 253 | Methyltransferase-like pr | yes | no | 0.726 | 0.691 | 0.401 | 1e-35 | |
| Q5RJL2 | 225 | Methyltransferase-like pr | yes | no | 0.713 | 0.764 | 0.385 | 3e-34 | |
| Q86XA0 | 190 | Methyltransferase-like pr | yes | no | 0.634 | 0.805 | 0.419 | 9e-33 | |
| Q96AZ1 | 226 | Protein-lysine methyltran | no | no | 0.576 | 0.615 | 0.300 | 3e-12 | |
| A6QP81 | 257 | Protein-lysine methyltran | no | no | 0.535 | 0.501 | 0.326 | 7e-12 | |
| Q28IN4 | 224 | Protein-lysine methyltran | no | no | 0.614 | 0.660 | 0.299 | 1e-11 | |
| Q8WXB1 | 218 | Protein-lysine methyltran | no | no | 0.477 | 0.527 | 0.358 | 2e-11 | |
| A4FV98 | 226 | Protein-lysine methyltran | no | no | 0.568 | 0.606 | 0.304 | 4e-11 | |
| A4IGU3 | 215 | Protein-lysine methyltran | no | no | 0.593 | 0.665 | 0.329 | 6e-11 |
| >sp|Q6DJF8|MET23_XENLA Methyltransferase-like protein 23 OS=Xenopus laevis GN=mettl23 PE=2 SV=1 | Back alignment and function desciption |
|---|
Score = 159 bits (403), Expect = 1e-38, Method: Compositional matrix adjust.
Identities = 73/171 (42%), Positives = 110/171 (64%), Gaps = 2/171 (1%)
Query: 30 SDKPSFSIAIIENMKEEYGLFVWPCSVILAEYVWQQRYRFSGANVVELGAGTSLPGLVAA 89
D+ + I E + +YG++VWPC+V+LA+Y+W R + V+E+GAG SLPG++AA
Sbjct: 22 KDEQKMRVTIPEVLNCQYGMYVWPCAVVLAQYLWYHRKNLADKRVLEVGAGVSLPGILAA 81
Query: 90 KVGSNVTLTDDSNRIEVLKNMRRVCEMNKL-NCRVMGLTWGFLDASIFDLNP-NIILGAD 147
K G+ V L+D + + L+N RR C+MN + V+GLTWG + + DL P +IILG+D
Sbjct: 82 KCGAKVILSDSAEMPQCLENCRRSCKMNNIVGVPVIGLTWGEVSPDLLDLPPIDIILGSD 141
Query: 148 VFYDASAFDDLFATITYLLQSSPGSVFITTYHNRSGHHLIEFLMVKWGLKC 198
VFY+ F+D+ T+ +L++ P + F TTY RS +E L+ KW LKC
Sbjct: 142 VFYEPKDFEDILLTVRFLMERMPQAEFWTTYQVRSADWSVEALLCKWNLKC 192
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Probable methyltransferase. Xenopus laevis (taxid: 8355) EC: 2EC: .EC: 1EC: .EC: 1EC: .EC: - |
| >sp|A2AA28|MET23_MOUSE Methyltransferase-like protein 23 OS=Mus musculus GN=Mettl23 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 150 bits (378), Expect = 1e-35, Method: Compositional matrix adjust.
Identities = 71/177 (40%), Positives = 109/177 (61%), Gaps = 2/177 (1%)
Query: 27 VDESDKPSFSIAIIENMKEEYGLFVWPCSVILAEYVWQQRYRFSGANVVELGAGTSLPGL 86
V ++ + + + + +YG++VWPC+V+LA+Y+W R G V+E+GAG SLPG+
Sbjct: 42 VPGGNRAVLEVRVPQVLHVQYGMYVWPCAVVLAQYLWFHRRSLPGKAVLEVGAGVSLPGI 101
Query: 87 VAAKVGSNVTLTDDSNRIEVLKNMRRVCEMNKL-NCRVMGLTWGFLDASIFDLNP-NIIL 144
+AAK G+ V L+D S L R+ C+MN L V+GLTWG + I L P +IIL
Sbjct: 102 LAAKCGAKVILSDSSEFPHCLDICRQSCQMNNLPQVEVVGLTWGHISKDILSLPPQDIIL 161
Query: 145 GADVFYDASAFDDLFATITYLLQSSPGSVFITTYHNRSGHHLIEFLMVKWGLKCVKL 201
G+DVF++ F+ + AT+ +L+Q +P F +TY RS +E L+ KW +KCV +
Sbjct: 162 GSDVFFEPEDFESILATVYFLMQKNPKVQFWSTYQVRSADWSLEGLLYKWDMKCVHI 218
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Probable methyltransferase. Mus musculus (taxid: 10090) EC: 2 EC: . EC: 1 EC: . EC: 1 EC: . EC: - |
| >sp|Q5RJL2|MET23_RAT Methyltransferase-like protein 23 OS=Rattus norvegicus GN=Mettl23 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 145 bits (366), Expect = 3e-34, Method: Compositional matrix adjust.
Identities = 67/174 (38%), Positives = 107/174 (61%), Gaps = 2/174 (1%)
Query: 30 SDKPSFSIAIIENMKEEYGLFVWPCSVILAEYVWQQRYRFSGANVVELGAGTSLPGLVAA 89
+D + + + + +YG++VWPC+V+LA+Y+W R G V+E+GAG SLPG++AA
Sbjct: 17 ADPTVLEVRVPQVLHVQYGMYVWPCAVVLAQYLWFHRRVLPGKAVLEIGAGVSLPGILAA 76
Query: 90 KVGSNVTLTDDSNRIEVLKNMRRVCEMNKL-NCRVMGLTWGFLDASIFDLNP-NIILGAD 147
K G+ VTL+D L + C+MN L +++GLTWG + L P +IILG+D
Sbjct: 77 KCGAKVTLSDSPELPHCLDICWQSCQMNNLPQVQIVGLTWGHISKDTLSLPPQDIILGSD 136
Query: 148 VFYDASAFDDLFATITYLLQSSPGSVFITTYHNRSGHHLIEFLMVKWGLKCVKL 201
VF++ F+ + AT+ +L+Q +P F +TY RS +E L+ KW ++CV +
Sbjct: 137 VFFEPEDFESILATVYFLMQKNPKVQFWSTYQVRSADWSLEGLLYKWDMRCVHI 190
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Probable methyltransferase. Rattus norvegicus (taxid: 10116) EC: 2 EC: . EC: 1 EC: . EC: 1 EC: . EC: - |
| >sp|Q86XA0|MET23_HUMAN Methyltransferase-like protein 23 OS=Homo sapiens GN=METTL23 PE=2 SV=3 | Back alignment and function description |
|---|
Score = 140 bits (352), Expect = 9e-33, Method: Compositional matrix adjust.
Identities = 65/155 (41%), Positives = 100/155 (64%), Gaps = 2/155 (1%)
Query: 49 LFVWPCSVILAEYVWQQRYRFSGANVVELGAGTSLPGLVAAKVGSNVTLTDDSNRIEVLK 108
++VWPC+V+LA+Y+W R G ++E+GAG SLPG++AAK G+ V L+D S L+
Sbjct: 1 MYVWPCAVVLAQYLWFHRRSLPGKAILEIGAGVSLPGILAAKCGAEVILSDSSELPHCLE 60
Query: 109 NMRRVCEMNKL-NCRVMGLTWGFLDASIFDLNP-NIILGADVFYDASAFDDLFATITYLL 166
R+ C+MN L + +V+GLTWG + + L P +IIL +DVF++ F+D+ ATI +L+
Sbjct: 61 VCRQSCQMNNLPHLQVVGLTWGHISWDLLALPPQDIILASDVFFEPEDFEDILATIYFLM 120
Query: 167 QSSPGSVFITTYHNRSGHHLIEFLMVKWGLKCVKL 201
+P +TY RS +E L+ KW +KCV +
Sbjct: 121 HKNPKVQLWSTYQVRSADWSLEALLYKWDMKCVHI 155
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Probable methyltransferase. Homo sapiens (taxid: 9606) EC: 2 EC: . EC: 1 EC: . EC: 1 EC: . EC: - |
| >sp|Q96AZ1|MT21B_HUMAN Protein-lysine methyltransferase METTL21B OS=Homo sapiens GN=METTL21B PE=2 SV=1 | Back alignment and function description |
|---|
Score = 72.0 bits (175), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 43/143 (30%), Positives = 74/143 (51%), Gaps = 4/143 (2%)
Query: 37 IAIIENMKEEYGLF--VWPCSVILAEYVWQQRYRFSGANVVELGAGTSLPGLVAAKVGSN 94
+ I +N G+ VW ++ L Y Q F G V+ELGAGT + G++AA G +
Sbjct: 40 LTITQNFGSRLGVAARVWDAALSLCNYFESQNVDFRGKKVIELGAGTGIVGILAALQGGD 99
Query: 95 VTLTDDSNRIEVLKNMRRVCEMNKLNCRVMGLTWGFLDASIFDLNPNIILGADVFYDASA 154
VT+TD +E ++ + +V L+WG +D +F N +++LGAD+ Y
Sbjct: 100 VTITDLPLALEQIQGNVQANVPAGGQAQVRALSWG-IDHHVFPANYDLVLGADIVYLEPT 158
Query: 155 FDDLFATITYLLQSSPGSVFITT 177
F L T+ +L + G++++ +
Sbjct: 159 FPLLLGTLQHLCRPH-GTIYLAS 180
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Probable methyltransferase. Homo sapiens (taxid: 9606) EC: 2 EC: . EC: 1 EC: . EC: 1 EC: . EC: - |
| >sp|A6QP81|MT21C_BOVIN Protein-lysine methyltransferase METTL21C OS=Bos taurus GN=METTL21C PE=2 SV=1 | Back alignment and function description |
|---|
Score = 70.9 bits (172), Expect = 7e-12, Method: Compositional matrix adjust.
Identities = 49/150 (32%), Positives = 77/150 (51%), Gaps = 21/150 (14%)
Query: 39 IIENMKEEYGLFVWPCSVILAEYVWQ--QRYRFSGANVVELGAGTSLPGLVAAKVGSNVT 96
+I+ E YG VWP ++ L +Y+ + + GA ++E+GAG L +VA+ +G+ VT
Sbjct: 72 VIQESIESYGAVVWPGAMALCQYLEEHTEELNLRGAKILEIGAGPGLVSIVASILGAQVT 131
Query: 97 LTDDSNRIEVLKNMRRVCEMNKLNC-----RVMGLTWG------FLDASIFDLNPNIILG 145
TD + VL N++ N LNC V L WG F ++++ + +L
Sbjct: 132 ATDLPD---VLGNLQYNLLKNTLNCTTYLPEVKELVWGEGLEQSFPKSTLYY---DYVLA 185
Query: 146 ADVFYDASAFDDLFATITYLLQSSPGSVFI 175
+DV Y D L AT+ YL Q PG+V +
Sbjct: 186 SDVVYHHYFLDKLLATMVYLCQ--PGTVLL 213
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Probable methyltransferase. Bos taurus (taxid: 9913) EC: 2 EC: . EC: 1 EC: . EC: 1 EC: . EC: - |
| >sp|Q28IN4|MT21B_XENTR Protein-lysine methyltransferase METTL21B OS=Xenopus tropicalis GN=mettl21b PE=2 SV=1 | Back alignment and function description |
|---|
Score = 70.1 bits (170), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 50/167 (29%), Positives = 77/167 (46%), Gaps = 19/167 (11%)
Query: 51 VWPCSVILAEYVWQQRYRFSGANVVELGAGTSLPGLVAAKVGSNVTLTDDSNRI-EVLKN 109
VW ++ L Y +Q+ F G V+ELGAGT + G++ + +G +VTLTD + + ++ KN
Sbjct: 57 VWDAALFLCGYFEEQKLDFKGKKVIELGAGTGIVGILVSLLGGHVTLTDLPHALSQIQKN 116
Query: 110 MRRVCEMNKLNCRVMGLTWGFLDASIFDLNPNIILGADVFYDASAFDDLFATITYLLQSS 169
+ N +V L+WG LD F + + +LGAD+ Y + L T+ YL
Sbjct: 117 VSANVSSNN-PPQVCALSWG-LDQEKFPQDYDFVLGADIVYLHDTYPLLIQTLQYL--CG 172
Query: 170 PGSVFITTYHNRSGHHLIEFLMVKWGLKCVKLVDGFSFLPHYKAREL 216
P + + R H + F LP Y A EL
Sbjct: 173 PQTSIFLSSKMRQEHGTMHFFQ--------------DILPQYFASEL 205
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Probable methyltransferase. Xenopus tropicalis (taxid: 8364) EC: 2 EC: . EC: 1 EC: . EC: 1 EC: . EC: - |
| >sp|Q8WXB1|MT21A_HUMAN Protein-lysine methyltransferase METTL21A OS=Homo sapiens GN=METTL21A PE=1 SV=2 | Back alignment and function description |
|---|
Score = 69.3 bits (168), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 42/117 (35%), Positives = 63/117 (53%), Gaps = 2/117 (1%)
Query: 51 VWPCSVILAEYVWQQRYRFSGANVVELGAGTSLPGLVAAKVGSNVTLTDDSNRIEVLKNM 110
VW +++L+ Y+ G + VELGAGT L G+VAA +G++VT+TD +E LK+
Sbjct: 46 VWDAAIVLSTYLEMGAVELRGRSAVELGAGTGLVGIVAALLGAHVTITDRKVALEFLKSN 105
Query: 111 RRVCEMNKLNCR--VMGLTWGFLDASIFDLNPNIILGADVFYDASAFDDLFATITYL 165
+ + + V LTWG S ++ILGAD+ Y F DL T+ +L
Sbjct: 106 VQANLPPHIQTKTVVKELTWGQNLGSFSPGEFDLILGADIIYLEETFTDLLQTLEHL 162
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Probable methyltransferase. Homo sapiens (taxid: 9606) EC: 2 EC: . EC: 1 EC: . EC: 1 EC: . EC: - |
| >sp|A4FV98|MT21B_BOVIN Protein-lysine methyltransferase METTL21B OS=Bos taurus GN=METTL21B PE=2 SV=1 | Back alignment and function description |
|---|
Score = 68.6 bits (166), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 43/141 (30%), Positives = 72/141 (51%), Gaps = 4/141 (2%)
Query: 39 IIENMKEEYGLF--VWPCSVILAEYVWQQRYRFSGANVVELGAGTSLPGLVAAKVGSNVT 96
I EN G+ VW ++ L Y Q F G V+ELGAGT + G++AA G +VT
Sbjct: 42 ITENFGSRLGVAARVWDAALSLCNYFESQNVDFRGKKVIELGAGTGIVGILAALQGGDVT 101
Query: 97 LTDDSNRIEVLKNMRRVCEMNKLNCRVMGLTWGFLDASIFDLNPNIILGADVFYDASAFD 156
+TD +E ++ + +V L+WG +D +F + +++LGAD+ Y F
Sbjct: 102 ITDLPLVLEQIQGNVQANVPPGGRAQVRALSWG-IDQHVFPGDYDLVLGADIVYLEPTFP 160
Query: 157 DLFATITYLLQSSPGSVFITT 177
L T+ +L G++++ +
Sbjct: 161 LLLGTLRHLCGPH-GTIYLAS 180
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Probable methyltransferase. Bos taurus (taxid: 9913) EC: 2 EC: . EC: 1 EC: . EC: 1 EC: . EC: - |
| >sp|A4IGU3|MT21A_XENTR Protein-lysine methyltransferase METTL21A OS=Xenopus tropicalis GN=mettl21a PE=2 SV=1 | Back alignment and function description |
|---|
Score = 67.8 bits (164), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 51/155 (32%), Positives = 79/155 (50%), Gaps = 12/155 (7%)
Query: 51 VWPCSVILAEYVWQQRYRFSGANVVELGAGTSLPGLVAAKVGSNVTLTDDSNRIEVLK-N 109
VW +++L Y+ + ++V+ELGAGT L G+VAA +G+ VT+TD +E L+ N
Sbjct: 46 VWDAALVLCMYLESEGIHLQNSSVIELGAGTGLVGIVAALLGAQVTITDRDLAMEFLRMN 105
Query: 110 MRRVCEMNKLN-CRVMGLTWG--FLDASIFDLNPNIILGADVFYDASAFDDLFATITYLL 166
+R + L+ V L WG + S +D ILGAD+ Y F DL T +L
Sbjct: 106 VRDNIPKDSLHRVSVRALNWGKSLEEFSTYDF----ILGADIIYLEETFPDLLQTFLHL- 160
Query: 167 QSSPGSVFITTYHNR--SGHHLIEFLMVKWGLKCV 199
SS SV + + R H +E + + + + V
Sbjct: 161 -SSQQSVILLSSRLRYQRDHDFLEMMKLHFTIADV 194
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Probable methyltransferase. Xenopus tropicalis (taxid: 8364) EC: 2 EC: . EC: 1 EC: . EC: 1 EC: . EC: - |
Close Homologs in the Non-Redundant Database Detected by BLAST
Original result of BLAST against Nonredundant Database
| GI | Alignment Graph | Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 241 | ||||||
| 255580627 | 238 | conserved hypothetical protein [Ricinus | 0.979 | 0.991 | 0.729 | 1e-100 | |
| 449434120 | 242 | PREDICTED: methyltransferase-like protei | 0.954 | 0.950 | 0.726 | 4e-97 | |
| 449517136 | 242 | PREDICTED: methyltransferase-like protei | 0.954 | 0.950 | 0.721 | 1e-96 | |
| 225431332 | 236 | PREDICTED: methyltransferase-like protei | 0.937 | 0.957 | 0.718 | 1e-93 | |
| 357145015 | 240 | PREDICTED: methyltransferase-like protei | 0.896 | 0.9 | 0.706 | 1e-86 | |
| 218189941 | 253 | hypothetical protein OsI_05627 [Oryza sa | 0.908 | 0.865 | 0.669 | 1e-84 | |
| 115443857 | 253 | Os02g0120300 [Oryza sativa Japonica Grou | 0.908 | 0.865 | 0.669 | 3e-84 | |
| 356495346 | 203 | PREDICTED: methyltransferase-like protei | 0.817 | 0.970 | 0.634 | 8e-76 | |
| 242060244 | 220 | hypothetical protein SORBIDRAFT_04g00162 | 0.858 | 0.940 | 0.629 | 2e-75 | |
| 297836997 | 194 | predicted protein [Arabidopsis lyrata su | 0.767 | 0.953 | 0.671 | 5e-75 |
| >gi|255580627|ref|XP_002531136.1| conserved hypothetical protein [Ricinus communis] gi|223529249|gb|EEF31221.1| conserved hypothetical protein [Ricinus communis] | Back alignment and taxonomy information |
|---|
Score = 370 bits (949), Expect = e-100, Method: Compositional matrix adjust.
Identities = 173/237 (72%), Positives = 205/237 (86%), Gaps = 1/237 (0%)
Query: 5 GSDKDEDEMTDKHMTTVSQHYFVDESDKPSFSIAIIENMKEEYGLFVWPCSVILAEYVWQ 64
G D DE E + ++M+TVS H F D +KP+FS++ IENMKEEYGLFVWPCSVILAEY+WQ
Sbjct: 3 GKDDDE-EPSHRNMSTVSHHVFGDGLEKPAFSVSTIENMKEEYGLFVWPCSVILAEYIWQ 61
Query: 65 QRYRFSGANVVELGAGTSLPGLVAAKVGSNVTLTDDSNRIEVLKNMRRVCEMNKLNCRVM 124
QR RFSGA+VVELGAGTSLPGL AAK+GS+VTLTDDSN +EVL N+R+VC +NKL C+V+
Sbjct: 62 QRERFSGADVVELGAGTSLPGLAAAKLGSHVTLTDDSNSLEVLDNIRKVCYLNKLKCKVL 121
Query: 125 GLTWGFLDASIFDLNPNIILGADVFYDASAFDDLFATITYLLQSSPGSVFITTYHNRSGH 184
GLTWG + SIFDL PNIILGADV Y++SAFDDLFAT+T+LLQ SPGSVFITTYHNRSGH
Sbjct: 122 GLTWGIWNISIFDLKPNIILGADVLYESSAFDDLFATVTFLLQKSPGSVFITTYHNRSGH 181
Query: 185 HLIEFLMVKWGLKCVKLVDGFSFLPHYKARELNGNIQLAEIVLNHESPEETSTSTVR 241
HLIEFLMVKWGLKCVKL+DGFSF+P +KA L+GNIQLAEI+LN+E E++ + R
Sbjct: 182 HLIEFLMVKWGLKCVKLLDGFSFMPSHKASGLSGNIQLAEIMLNNEQTNESNIAKAR 238
|
Source: Ricinus communis Species: Ricinus communis Genus: Ricinus Family: Euphorbiaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|449434120|ref|XP_004134844.1| PREDICTED: methyltransferase-like protein 23-like [Cucumis sativus] | Back alignment and taxonomy information |
|---|
Score = 359 bits (922), Expect = 4e-97, Method: Compositional matrix adjust.
Identities = 167/230 (72%), Positives = 197/230 (85%)
Query: 7 DKDEDEMTDKHMTTVSQHYFVDESDKPSFSIAIIENMKEEYGLFVWPCSVILAEYVWQQR 66
D D D+ D +TT S H F D++ K FSIAIIENM+EEYGL+VWPCS+ILAEYVWQQ+
Sbjct: 10 DGDPDKPADPSLTTTSHHVFEDDAGKSVFSIAIIENMEEEYGLYVWPCSIILAEYVWQQK 69
Query: 67 YRFSGANVVELGAGTSLPGLVAAKVGSNVTLTDDSNRIEVLKNMRRVCEMNKLNCRVMGL 126
RF+GANVVELGAGTSLPGLVAAK+G++VTLTDD+NR+EVL N+R+VC++N LNC +MGL
Sbjct: 70 ARFAGANVVELGAGTSLPGLVAAKLGASVTLTDDANRVEVLDNIRKVCDLNNLNCNIMGL 129
Query: 127 TWGFLDASIFDLNPNIILGADVFYDASAFDDLFATITYLLQSSPGSVFITTYHNRSGHHL 186
TWG D SIF+L P II+GADV Y+ SAFDDLF+T+ +LLQ+SPGSVFITTYHNRSGHHL
Sbjct: 130 TWGIWDISIFNLRPTIIIGADVLYENSAFDDLFSTVAFLLQNSPGSVFITTYHNRSGHHL 189
Query: 187 IEFLMVKWGLKCVKLVDGFSFLPHYKARELNGNIQLAEIVLNHESPEETS 236
IEFLMVKWGLKC KLVDGF+FLP KA +L+GNIQLAEIVLN +ETS
Sbjct: 190 IEFLMVKWGLKCEKLVDGFAFLPSQKASKLSGNIQLAEIVLNCGPVKETS 239
|
Source: Cucumis sativus Species: Cucumis sativus Genus: Cucumis Family: Cucurbitaceae Order: Cucurbitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|449517136|ref|XP_004165602.1| PREDICTED: methyltransferase-like protein 23-like [Cucumis sativus] | Back alignment and taxonomy information |
|---|
Score = 358 bits (919), Expect = 1e-96, Method: Compositional matrix adjust.
Identities = 166/230 (72%), Positives = 197/230 (85%)
Query: 7 DKDEDEMTDKHMTTVSQHYFVDESDKPSFSIAIIENMKEEYGLFVWPCSVILAEYVWQQR 66
D D D+ D +TT S H F D++ K FSIAIIENM+EEYGL++WPCS+ILAEYVWQQ+
Sbjct: 10 DGDPDKPADPSLTTTSHHVFEDDAGKSVFSIAIIENMEEEYGLYMWPCSIILAEYVWQQK 69
Query: 67 YRFSGANVVELGAGTSLPGLVAAKVGSNVTLTDDSNRIEVLKNMRRVCEMNKLNCRVMGL 126
RF+GANVVELGAGTSLPGLVAAK+G++VTLTDD+NR+EVL N+R+VC++N LNC +MGL
Sbjct: 70 ARFAGANVVELGAGTSLPGLVAAKLGASVTLTDDANRVEVLDNIRKVCDLNNLNCNIMGL 129
Query: 127 TWGFLDASIFDLNPNIILGADVFYDASAFDDLFATITYLLQSSPGSVFITTYHNRSGHHL 186
TWG D SIF+L P II+GADV Y+ SAFDDLF+T+ +LLQ+SPGSVFITTYHNRSGHHL
Sbjct: 130 TWGIWDISIFNLRPTIIIGADVLYENSAFDDLFSTVAFLLQNSPGSVFITTYHNRSGHHL 189
Query: 187 IEFLMVKWGLKCVKLVDGFSFLPHYKARELNGNIQLAEIVLNHESPEETS 236
IEFLMVKWGLKC KLVDGF+FLP KA +L+GNIQLAEIVLN +ETS
Sbjct: 190 IEFLMVKWGLKCEKLVDGFAFLPSQKASKLSGNIQLAEIVLNCGPVKETS 239
|
Source: Cucumis sativus Species: Cucumis sativus Genus: Cucumis Family: Cucurbitaceae Order: Cucurbitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|225431332|ref|XP_002277720.1| PREDICTED: methyltransferase-like protein 23 [Vitis vinifera] gi|296084695|emb|CBI25837.3| unnamed protein product [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 348 bits (892), Expect = 1e-93, Method: Compositional matrix adjust.
Identities = 166/231 (71%), Positives = 198/231 (85%), Gaps = 5/231 (2%)
Query: 5 GSDKDE----DEMTDKHMTTVSQHYFVDESDK-PSFSIAIIENMKEEYGLFVWPCSVILA 59
GSD+DE +D+HMTT S+H+F + D +FSI IIE+MKE+YGLFVWPCSV+LA
Sbjct: 3 GSDEDEPAGASSQSDQHMTTTSRHHFGNARDSGDAFSITIIESMKEDYGLFVWPCSVVLA 62
Query: 60 EYVWQQRYRFSGANVVELGAGTSLPGLVAAKVGSNVTLTDDSNRIEVLKNMRRVCEMNKL 119
EYVWQQR RF GA+VVELGAGTSLPGLVAAK+GS+VTLTD++ R+EVL NMRRVC++N+L
Sbjct: 63 EYVWQQRSRFLGASVVELGAGTSLPGLVAAKLGSDVTLTDNAVRLEVLDNMRRVCDLNEL 122
Query: 120 NCRVMGLTWGFLDASIFDLNPNIILGADVFYDASAFDDLFATITYLLQSSPGSVFITTYH 179
C V+GLTWG DA++F+L P IILGADV YD +AFDDLFAT+T+LLQ++ GSVFITTYH
Sbjct: 123 KCEVLGLTWGMWDAAVFNLKPKIILGADVLYDTNAFDDLFATVTFLLQNTLGSVFITTYH 182
Query: 180 NRSGHHLIEFLMVKWGLKCVKLVDGFSFLPHYKARELNGNIQLAEIVLNHE 230
NRSGHHLIEFLMVKWGLKCVKL+DGFSF+P KA L+G+IQLAEIVLN E
Sbjct: 183 NRSGHHLIEFLMVKWGLKCVKLLDGFSFMPSDKASGLSGSIQLAEIVLNCE 233
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|357145015|ref|XP_003573493.1| PREDICTED: methyltransferase-like protein 23-like [Brachypodium distachyon] | Back alignment and taxonomy information |
|---|
Score = 325 bits (832), Expect = 1e-86, Method: Compositional matrix adjust.
Identities = 154/218 (70%), Positives = 181/218 (83%), Gaps = 2/218 (0%)
Query: 18 MTTVSQHYFVDESDKPS--FSIAIIENMKEEYGLFVWPCSVILAEYVWQQRYRFSGANVV 75
MTTVS+HYF S + I+ENM+E+YG+FVWPCSVILAEYVWQQR RFSG+ VV
Sbjct: 23 MTTVSRHYFGGASSDRDHHLRVDILENMQEDYGMFVWPCSVILAEYVWQQRPRFSGSAVV 82
Query: 76 ELGAGTSLPGLVAAKVGSNVTLTDDSNRIEVLKNMRRVCEMNKLNCRVMGLTWGFLDASI 135
ELGAGTSLPGLVAAKVG+NVTLTD ++ EVL N+R++C +N NC V+GLTWG D I
Sbjct: 83 ELGAGTSLPGLVAAKVGANVTLTDIADNTEVLDNIRQICGVNDANCNVLGLTWGDWDEPI 142
Query: 136 FDLNPNIILGADVFYDASAFDDLFATITYLLQSSPGSVFITTYHNRSGHHLIEFLMVKWG 195
FDL+P+IILGADV YD++ FDDLFAT+T+LL+SSPG+VFITTYHNRSGHHLIEFLMVKWG
Sbjct: 143 FDLHPDIILGADVLYDSAKFDDLFATVTFLLESSPGAVFITTYHNRSGHHLIEFLMVKWG 202
Query: 196 LKCVKLVDGFSFLPHYKARELNGNIQLAEIVLNHESPE 233
LKC+KL+DGFSFLP KA L GNIQL EI L+ E P+
Sbjct: 203 LKCLKLLDGFSFLPSCKAASLQGNIQLVEITLDKEKPK 240
|
Source: Brachypodium distachyon Species: Brachypodium distachyon Genus: Brachypodium Family: Poaceae Order: Poales Class: Liliopsida Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|218189941|gb|EEC72368.1| hypothetical protein OsI_05627 [Oryza sativa Indica Group] | Back alignment and taxonomy information |
|---|
Score = 318 bits (815), Expect = 1e-84, Method: Compositional matrix adjust.
Identities = 148/221 (66%), Positives = 182/221 (82%), Gaps = 2/221 (0%)
Query: 18 MTTVSQHYFVDESDKPS--FSIAIIENMKEEYGLFVWPCSVILAEYVWQQRYRFSGANVV 75
MTTVS+HYF S + + IIEN++E+YG+FVWPCSVILAEYVWQQR RF+ + VV
Sbjct: 27 MTTVSKHYFGGASSAHNHDLRVDIIENIEEDYGMFVWPCSVILAEYVWQQRSRFTASTVV 86
Query: 76 ELGAGTSLPGLVAAKVGSNVTLTDDSNRIEVLKNMRRVCEMNKLNCRVMGLTWGFLDASI 135
ELGAGTSLPGLVAAKVG++VTLTD ++ EVL N+R+VC +N +NC V+GLTWG D
Sbjct: 87 ELGAGTSLPGLVAAKVGADVTLTDIAHNTEVLNNIRQVCGLNNVNCTVLGLTWGEWDEPT 146
Query: 136 FDLNPNIILGADVFYDASAFDDLFATITYLLQSSPGSVFITTYHNRSGHHLIEFLMVKWG 195
FDL+P++ILGADV YD++ FDDLFAT+++LL++SPG++FITTYHNRSGHHLIEFLMVKWG
Sbjct: 147 FDLHPDVILGADVLYDSAKFDDLFATVSFLLENSPGAMFITTYHNRSGHHLIEFLMVKWG 206
Query: 196 LKCVKLVDGFSFLPHYKARELNGNIQLAEIVLNHESPEETS 236
LKC+KL+DGFSFLP KA L GNIQL EI L+ E P +S
Sbjct: 207 LKCLKLLDGFSFLPSCKAASLQGNIQLVEIALDKEKPNCSS 247
|
Source: Oryza sativa Indica Group Species: Oryza sativa Genus: Oryza Family: Poaceae Order: Poales Class: Liliopsida Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|115443857|ref|NP_001045708.1| Os02g0120300 [Oryza sativa Japonica Group] gi|41052624|dbj|BAD08133.1| unknown protein [Oryza sativa Japonica Group] gi|41052737|dbj|BAD07593.1| unknown protein [Oryza sativa Japonica Group] gi|113535239|dbj|BAF07622.1| Os02g0120300 [Oryza sativa Japonica Group] gi|222622065|gb|EEE56197.1| hypothetical protein OsJ_05156 [Oryza sativa Japonica Group] | Back alignment and taxonomy information |
|---|
Score = 317 bits (812), Expect = 3e-84, Method: Compositional matrix adjust.
Identities = 148/221 (66%), Positives = 181/221 (81%), Gaps = 2/221 (0%)
Query: 18 MTTVSQHYFVDESDKPS--FSIAIIENMKEEYGLFVWPCSVILAEYVWQQRYRFSGANVV 75
MTTVS+HYF S + + IIEN++E+YG+FVWPCSVILAEYVWQQR RF+ + VV
Sbjct: 27 MTTVSKHYFGGASSAHNHDLRVDIIENIEEDYGMFVWPCSVILAEYVWQQRSRFTASTVV 86
Query: 76 ELGAGTSLPGLVAAKVGSNVTLTDDSNRIEVLKNMRRVCEMNKLNCRVMGLTWGFLDASI 135
ELGAGTSLPGLVAAKVG++VTLTD ++ EVL N+R+VC +N +NC V+GLTWG D
Sbjct: 87 ELGAGTSLPGLVAAKVGADVTLTDIAHNTEVLNNIRQVCGLNNVNCTVLGLTWGEWDEPT 146
Query: 136 FDLNPNIILGADVFYDASAFDDLFATITYLLQSSPGSVFITTYHNRSGHHLIEFLMVKWG 195
FDL+P++ILGADV YD++ FDDLFAT+++LL++SPG++FITTYHNRSGHHLIEFLMVKWG
Sbjct: 147 FDLHPDVILGADVLYDSAKFDDLFATVSFLLENSPGAMFITTYHNRSGHHLIEFLMVKWG 206
Query: 196 LKCVKLVDGFSFLPHYKARELNGNIQLAEIVLNHESPEETS 236
LKC+KL DGFSFLP KA L GNIQL EI L+ E P +S
Sbjct: 207 LKCLKLRDGFSFLPSCKAASLQGNIQLVEIALDKEKPNCSS 247
|
Source: Oryza sativa Japonica Group Species: Oryza sativa Genus: Oryza Family: Poaceae Order: Poales Class: Liliopsida Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|356495346|ref|XP_003516539.1| PREDICTED: methyltransferase-like protein 23-like [Glycine max] | Back alignment and taxonomy information |
|---|
Score = 289 bits (739), Expect = 8e-76, Method: Compositional matrix adjust.
Identities = 144/227 (63%), Positives = 168/227 (74%), Gaps = 30/227 (13%)
Query: 1 MRDVGSDKDEDEMTDKHMTTVSQHYFVDESDKPSFSIAIIENMKEEYGLFVWPCSVILAE 60
M D ++ +D +T MTTVSQH+F D+S+ PSFSI+IIENMKE+YGLFVWPCSV+LAE
Sbjct: 1 MEDWNDEQCDDTLT---MTTVSQHFFGDDSETPSFSISIIENMKEDYGLFVWPCSVVLAE 57
Query: 61 YVWQQRYRFSGANVVELGAGTSLPGLVAAKVGSNVTLTDDSNRIEVLKNMRRVCEMNKLN 120
Y+WQ ++RFSGA VVELGAGTSLPGLVAAK+G+ VTLTDDS R+EVL NMRRVC++NKL
Sbjct: 58 YIWQHKHRFSGATVVELGAGTSLPGLVAAKLGARVTLTDDSTRLEVLDNMRRVCDLNKLE 117
Query: 121 CRVMGLTWGFLDASIFDLNPNIILGADVFYDASAFDDLFATITYLLQSSPGSVFITTYHN 180
C V+GLTWG D+SIF L P IILGADV YD+
Sbjct: 118 CNVLGLTWGVWDSSIFSLQPTIILGADVLYDSKG-------------------------- 151
Query: 181 RSGHHLIEFLMVKWGLKCVKLVDGFSFLPHYKARELNGNIQLAEIVL 227
SGHHLIEFLM KWGLKC+KL+DGFSFLP KA L+GNIQLAEI L
Sbjct: 152 -SGHHLIEFLMGKWGLKCLKLLDGFSFLPPDKASLLSGNIQLAEIGL 197
|
Source: Glycine max Species: Glycine max Genus: Glycine Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|242060244|ref|XP_002451411.1| hypothetical protein SORBIDRAFT_04g001620 [Sorghum bicolor] gi|241931242|gb|EES04387.1| hypothetical protein SORBIDRAFT_04g001620 [Sorghum bicolor] | Back alignment and taxonomy information |
|---|
Score = 287 bits (735), Expect = 2e-75, Method: Compositional matrix adjust.
Identities = 141/224 (62%), Positives = 166/224 (74%), Gaps = 17/224 (7%)
Query: 9 DEDEMTDKHMTTVSQHYFVDESDKP--SFSIAIIENMKEEYGLFVWPCSVILAEYVWQQR 66
D T MTTVS+HYF + + + IIEN++E+YG+FVWPCSVILAEYVWQQR
Sbjct: 9 DRAAATPTRMTTVSRHYFGGSASERHHDLRVDIIENIEEDYGMFVWPCSVILAEYVWQQR 68
Query: 67 YRFSGANVVELGAGTSLPGLVAAKVGSNVTLTDDSNRIEVLKNMRRVCEMNKLNCRVMGL 126
RFS + VVELGAGTSLPGLVAAKV L N+R +C +N +C V GL
Sbjct: 69 SRFSASRVVELGAGTSLPGLVAAKV---------------LNNIRSICALNNASCTVSGL 113
Query: 127 TWGFLDASIFDLNPNIILGADVFYDASAFDDLFATITYLLQSSPGSVFITTYHNRSGHHL 186
TWG D ++FDL P+IILGADV YD+S FDDLFAT+T+LL++S G+VFITTYHNRSGHHL
Sbjct: 114 TWGDWDETVFDLRPDIILGADVLYDSSNFDDLFATVTFLLENSSGAVFITTYHNRSGHHL 173
Query: 187 IEFLMVKWGLKCVKLVDGFSFLPHYKARELNGNIQLAEIVLNHE 230
IEFLMVKWGLKC+KL+DGFSFLP KA L GNIQL EI L+ E
Sbjct: 174 IEFLMVKWGLKCLKLLDGFSFLPPCKAASLQGNIQLVEITLDKE 217
|
Source: Sorghum bicolor Species: Sorghum bicolor Genus: Sorghum Family: Poaceae Order: Poales Class: Liliopsida Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|297836997|ref|XP_002886380.1| predicted protein [Arabidopsis lyrata subsp. lyrata] gi|297332221|gb|EFH62639.1| predicted protein [Arabidopsis lyrata subsp. lyrata] | Back alignment and taxonomy information |
|---|
Score = 286 bits (732), Expect = 5e-75, Method: Compositional matrix adjust.
Identities = 145/216 (67%), Positives = 163/216 (75%), Gaps = 31/216 (14%)
Query: 19 TTVSQHYFVDESD-KPSFSIAIIENMKEEYGLFVWPCSVILAEYVWQQRYRFSGANVVEL 77
TT+SQH F + D + S SI++IEN+KEEYGLFVWPCSVILAEYVWQQR RF ++V+EL
Sbjct: 5 TTISQHDFYGDGDSETSISISVIENLKEEYGLFVWPCSVILAEYVWQQRSRFRHSSVLEL 64
Query: 78 GAGTSLPGLVAAKVGSNVTLTDDSNRIEVLKNMRRVCEMNKLNCRVMGLTWGFLDASIFD 137
GAGTSLPGLVAAKVG+NVTLTDD+++ EVL NMRRVCE+NKLNC VMGLTWG DA IFD
Sbjct: 65 GAGTSLPGLVAAKVGANVTLTDDASKPEVLDNMRRVCELNKLNCNVMGLTWGVWDAPIFD 124
Query: 138 LNPNIILGADVFYDASAFDDLFATITYLLQSSPGSVFITTYHNRSGHHLIEFLMVKWGLK 197
L PNIILGADV YD+S + GHHLIEFLMVKWGLK
Sbjct: 125 LRPNIILGADVLYDSSGY---------------------------GHHLIEFLMVKWGLK 157
Query: 198 CVKLVDGFSFLPHYKARELNGNIQLAEIVL---NHE 230
CVKL+DGFSFLP YKA L+GNIQL EIVL NHE
Sbjct: 158 CVKLLDGFSFLPSYKASLLSGNIQLVEIVLSSKNHE 193
|
Source: Arabidopsis lyrata subsp. lyrata Species: Arabidopsis lyrata Genus: Arabidopsis Family: Brassicaceae Order: Brassicales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
Prediction of Gene Ontology (GO) Terms
Close Homologs with Gene Ontology terms Detected by BLAST
Original result of BLAST against Gene Ontology (AMIGO)
| ID |
Alignment graph |
Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 241 | ||||||
| TAIR|locus:504956172 | 196 | AT1G63855 "AT1G63855" [Arabido | 0.556 | 0.683 | 0.725 | 2.6e-69 | |
| MGI|MGI:1921569 | 253 | Mettl23 "methyltransferase lik | 0.726 | 0.691 | 0.401 | 9.5e-34 | |
| RGD|1306284 | 225 | Mettl23 "methyltransferase lik | 0.713 | 0.764 | 0.385 | 2.3e-32 | |
| UNIPROTKB|Q86XA0 | 190 | METTL23 "Methyltransferase-lik | 0.634 | 0.805 | 0.419 | 5.4e-31 | |
| ZFIN|ZDB-GENE-060825-19 | 223 | mettl21d "methyltransferase li | 0.634 | 0.686 | 0.310 | 1.4e-14 | |
| UNIPROTKB|Q96AZ1 | 226 | METTL21B "Protein-lysine methy | 0.713 | 0.761 | 0.297 | 3.8e-14 | |
| UNIPROTKB|A4IGU3 | 215 | mettl21a "Protein-lysine methy | 0.713 | 0.8 | 0.304 | 1e-13 | |
| UNIPROTKB|A6QP81 | 257 | METTL21C "Protein-lysine methy | 0.547 | 0.513 | 0.346 | 1.8e-13 | |
| UNIPROTKB|I3LNJ7 | 226 | METTL21B "Uncharacterized prot | 0.622 | 0.663 | 0.3 | 2.1e-13 | |
| UNIPROTKB|A4FV42 | 218 | METTL21A "Protein-lysine methy | 0.464 | 0.513 | 0.375 | 4.4e-13 |
| TAIR|locus:504956172 AT1G63855 "AT1G63855" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 515 (186.3 bits), Expect = 2.6e-69, Sum P(2) = 2.6e-69
Identities = 98/135 (72%), Positives = 112/135 (82%)
Query: 19 TTVSQHYFVDESDKPSFSIAIIENMKEEYGLFVWPCSVILAEYVWQQRYRFSGANVVELG 78
TT+SQH F D + I+IIEN+KEEYGLFVWPCSVILAEYVWQ R RF ++++ELG
Sbjct: 7 TTISQHNFYGAGDSET-CISIIENLKEEYGLFVWPCSVILAEYVWQHRSRFRDSSILELG 65
Query: 79 AGTSLPGLVAAKVGSNVTLTDDSNRIEVLKNMRRVCEMNKLNCRVMGLTWGFLDASIFDL 138
AGTSLPGLVAAKVG+NVTLTDD+ + EVL NMRRVCE+NKLNC V+GLTWG DA I DL
Sbjct: 66 AGTSLPGLVAAKVGANVTLTDDATKPEVLDNMRRVCELNKLNCNVLGLTWGVWDAPILDL 125
Query: 139 NPNIILGADVFYDAS 153
PNIILGADV YD+S
Sbjct: 126 RPNIILGADVLYDSS 140
|
|
| MGI|MGI:1921569 Mettl23 "methyltransferase like 23" [Mus musculus (taxid:10090)] | Back alignment and assigned GO terms |
|---|
Score = 367 (134.2 bits), Expect = 9.5e-34, P = 9.5e-34
Identities = 71/177 (40%), Positives = 109/177 (61%)
Query: 27 VDESDKPSFSIAIIENMKEEYGLFVWPCSVILAEYVWQQRYRFSGANVVELGAGTSLPGL 86
V ++ + + + + +YG++VWPC+V+LA+Y+W R G V+E+GAG SLPG+
Sbjct: 42 VPGGNRAVLEVRVPQVLHVQYGMYVWPCAVVLAQYLWFHRRSLPGKAVLEVGAGVSLPGI 101
Query: 87 VAAKVGSNVTLTDDSNRIEVLKNMRRVCEMNKL-NCRVMGLTWGFLDASIFDLNP-NIIL 144
+AAK G+ V L+D S L R+ C+MN L V+GLTWG + I L P +IIL
Sbjct: 102 LAAKCGAKVILSDSSEFPHCLDICRQSCQMNNLPQVEVVGLTWGHISKDILSLPPQDIIL 161
Query: 145 GADVFYDASAFDDLFATITYLLQSSPGSVFITTYHNRSGHHLIEFLMVKWGLKCVKL 201
G+DVF++ F+ + AT+ +L+Q +P F +TY RS +E L+ KW +KCV +
Sbjct: 162 GSDVFFEPEDFESILATVYFLMQKNPKVQFWSTYQVRSADWSLEGLLYKWDMKCVHI 218
|
|
| RGD|1306284 Mettl23 "methyltransferase like 23" [Rattus norvegicus (taxid:10116)] | Back alignment and assigned GO terms |
|---|
Score = 354 (129.7 bits), Expect = 2.3e-32, P = 2.3e-32
Identities = 67/174 (38%), Positives = 107/174 (61%)
Query: 30 SDKPSFSIAIIENMKEEYGLFVWPCSVILAEYVWQQRYRFSGANVVELGAGTSLPGLVAA 89
+D + + + + +YG++VWPC+V+LA+Y+W R G V+E+GAG SLPG++AA
Sbjct: 17 ADPTVLEVRVPQVLHVQYGMYVWPCAVVLAQYLWFHRRVLPGKAVLEIGAGVSLPGILAA 76
Query: 90 KVGSNVTLTDDSNRIEVLKNMRRVCEMNKL-NCRVMGLTWGFLDASIFDLNP-NIILGAD 147
K G+ VTL+D L + C+MN L +++GLTWG + L P +IILG+D
Sbjct: 77 KCGAKVTLSDSPELPHCLDICWQSCQMNNLPQVQIVGLTWGHISKDTLSLPPQDIILGSD 136
Query: 148 VFYDASAFDDLFATITYLLQSSPGSVFITTYHNRSGHHLIEFLMVKWGLKCVKL 201
VF++ F+ + AT+ +L+Q +P F +TY RS +E L+ KW ++CV +
Sbjct: 137 VFFEPEDFESILATVYFLMQKNPKVQFWSTYQVRSADWSLEGLLYKWDMRCVHI 190
|
|
| UNIPROTKB|Q86XA0 METTL23 "Methyltransferase-like protein 23" [Homo sapiens (taxid:9606)] | Back alignment and assigned GO terms |
|---|
Score = 341 (125.1 bits), Expect = 5.4e-31, P = 5.4e-31
Identities = 65/155 (41%), Positives = 100/155 (64%)
Query: 49 LFVWPCSVILAEYVWQQRYRFSGANVVELGAGTSLPGLVAAKVGSNVTLTDDSNRIEVLK 108
++VWPC+V+LA+Y+W R G ++E+GAG SLPG++AAK G+ V L+D S L+
Sbjct: 1 MYVWPCAVVLAQYLWFHRRSLPGKAILEIGAGVSLPGILAAKCGAEVILSDSSELPHCLE 60
Query: 109 NMRRVCEMNKL-NCRVMGLTWGFLDASIFDLNP-NIILGADVFYDASAFDDLFATITYLL 166
R+ C+MN L + +V+GLTWG + + L P +IIL +DVF++ F+D+ ATI +L+
Sbjct: 61 VCRQSCQMNNLPHLQVVGLTWGHISWDLLALPPQDIILASDVFFEPEDFEDILATIYFLM 120
Query: 167 QSSPGSVFITTYHNRSGHHLIEFLMVKWGLKCVKL 201
+P +TY RS +E L+ KW +KCV +
Sbjct: 121 HKNPKVQLWSTYQVRSADWSLEALLYKWDMKCVHI 155
|
|
| ZFIN|ZDB-GENE-060825-19 mettl21d "methyltransferase like 21D" [Danio rerio (taxid:7955)] | Back alignment and assigned GO terms |
|---|
Score = 186 (70.5 bits), Expect = 1.4e-14, P = 1.4e-14
Identities = 55/177 (31%), Positives = 93/177 (52%)
Query: 22 SQHYFVDESDKPSFSIA-IIENMKEEYGLFVWPCSVILAEYVWQQRY--------RFSGA 72
S+ YFV E +K S+ + + K + G VW +++L++Y+ +++ +S
Sbjct: 7 SEDYFVREIEKNDGSVLRMYQCSKGDVGCVVWDAAIVLSKYLETEQFCSIGSGVSMWSSK 66
Query: 73 NVVELGAGTSLPGLVAAKVGSNVTLTDDSN-----RIEVLKNMRRVCEMNKLNCRVMGLT 127
N++ELGAGT L GLVAA +G+NVTLTD + ++ + KN + + + +V L
Sbjct: 67 NIIELGAGTGLVGLVAASLGANVTLTDLEDLQPLLQLNIKKNQQLI-HTGSVTAKV--LK 123
Query: 128 WGFLDASIFDL--NPNIILGADVFYDASAFDDLFATITYLLQSSPGSVFITTYHNRS 182
WG A++ D +P+ IL AD Y + + L T+ L + P + I Y R+
Sbjct: 124 WG---ANVDDFLPHPHYILMADCIYYEQSVEPLVETLKLL--AGPETCIICCYEQRT 175
|
|
| UNIPROTKB|Q96AZ1 METTL21B "Protein-lysine methyltransferase METTL21B" [Homo sapiens (taxid:9606)] | Back alignment and assigned GO terms |
|---|
Score = 182 (69.1 bits), Expect = 3.8e-14, P = 3.8e-14
Identities = 55/185 (29%), Positives = 87/185 (47%)
Query: 1 MRDVGSDKDEDEMTDKHMTTVSQHYFVDE-SDKPSFS-----IAIIENMKEEYGLF--VW 52
M D G D E E V F D S+K F + I +N G+ VW
Sbjct: 1 MADPGPDP-ESESESVFPREVG--LFADSYSEKSQFCFCGHVLTITQNFGSRLGVAARVW 57
Query: 53 PCSVILAEYVWQQRYRFSGANVVELGAGTSLPGLVAAKVGSNVTLTDDSNRIEVLKNMRR 112
++ L Y Q F G V+ELGAGT + G++AA G +VT+TD +E ++ +
Sbjct: 58 DAALSLCNYFESQNVDFRGKKVIELGAGTGIVGILAALQGGDVTITDLPLALEQIQGNVQ 117
Query: 113 VCEMNKLNCRVMGLTWGFLDASIFDLNPNIILGADVFYDASAFDDLFATITYLLQSSPGS 172
+V L+WG +D +F N +++LGAD+ Y F L T+ +L + G+
Sbjct: 118 ANVPAGGQAQVRALSWG-IDHHVFPANYDLVLGADIVYLEPTFPLLLGTLQHLCRPH-GT 175
Query: 173 VFITT 177
+++ +
Sbjct: 176 IYLAS 180
|
|
| UNIPROTKB|A4IGU3 mettl21a "Protein-lysine methyltransferase METTL21A" [Xenopus (Silurana) tropicalis (taxid:8364)] | Back alignment and assigned GO terms |
|---|
Score = 178 (67.7 bits), Expect = 1.0e-13, P = 1.0e-13
Identities = 56/184 (30%), Positives = 93/184 (50%)
Query: 14 TDKHMTTVSQHYFVDESDK-PSFSIAIIENMKE-EYGLFVWPCSVILAEYVWQQRYRFSG 71
TD + ++ + + S K + +I I ++ K+ VW +++L Y+ +
Sbjct: 7 TDSGVQSLKRFHDSSASFKFVNHNIEIKQDWKQLGVAAVVWDAALVLCMYLESEGIHLQN 66
Query: 72 ANVVELGAGTSLPGLVAAKVGSNVTLTDDSNRIEVLK-NMRRVCEMNKLN-CRVMGLTWG 129
++V+ELGAGT L G+VAA +G+ VT+TD +E L+ N+R + L+ V L WG
Sbjct: 67 SSVIELGAGTGLVGIVAALLGAQVTITDRDLAMEFLRMNVRDNIPKDSLHRVSVRALNWG 126
Query: 130 FLDASIFDLNP-NIILGADVFYDASAFDDLFATITYLLQSSPGSVFITTYHNR--SGHHL 186
S+ + + + ILGAD+ Y F DL T +L SS SV + + R H
Sbjct: 127 ---KSLEEFSTYDFILGADIIYLEETFPDLLQTFLHL--SSQQSVILLSSRLRYQRDHDF 181
Query: 187 IEFL 190
+E +
Sbjct: 182 LEMM 185
|
|
| UNIPROTKB|A6QP81 METTL21C "Protein-lysine methyltransferase METTL21C" [Bos taurus (taxid:9913)] | Back alignment and assigned GO terms |
|---|
Score = 176 (67.0 bits), Expect = 1.8e-13, P = 1.8e-13
Identities = 51/147 (34%), Positives = 76/147 (51%)
Query: 39 IIENMKEEYGLFVWPCSVILAEYVWQ--QRYRFSGANVVELGAGTSLPGLVAAKVGSNVT 96
+I+ E YG VWP ++ L +Y+ + + GA ++E+GAG L +VA+ +G+ VT
Sbjct: 72 VIQESIESYGAVVWPGAMALCQYLEEHTEELNLRGAKILEIGAGPGLVSIVASILGAQVT 131
Query: 97 LTDDSNRIEVLKNMRRVCEMNKLNC-----RVMGLTWGF-LDASI--FDLNPNIILGADV 148
TD +VL N++ N LNC V L WG L+ S L + +L +DV
Sbjct: 132 ATDLP---DVLGNLQYNLLKNTLNCTTYLPEVKELVWGEGLEQSFPKSTLYYDYVLASDV 188
Query: 149 FYDASAFDDLFATITYLLQSSPGSVFI 175
Y D L AT+ YL Q PG+V +
Sbjct: 189 VYHHYFLDKLLATMVYLCQ--PGTVLL 213
|
|
| UNIPROTKB|I3LNJ7 METTL21B "Uncharacterized protein" [Sus scrofa (taxid:9823)] | Back alignment and assigned GO terms |
|---|
Score = 175 (66.7 bits), Expect = 2.1e-13, P = 2.1e-13
Identities = 48/160 (30%), Positives = 80/160 (50%)
Query: 26 FVDE-SDKPSF-----SIAIIENMKEEYGLF--VWPCSVILAEYVWQQRYRFSGANVVEL 77
F D S+K F ++I EN G+ VW ++ L Y Q F G V+EL
Sbjct: 23 FADSYSEKSRFCFCGHELSITENFGSRLGVAARVWDAALSLCNYFESQNVDFRGKKVIEL 82
Query: 78 GAGTSLPGLVAAKVGSNVTLTDDSNRIEVLKNMRRVCEMNKLNCRVMGLTWGFLDASIFD 137
GAGT + G++AA G +VT+TD +E ++ + +V L+WG +D +F
Sbjct: 83 GAGTGIVGILAALQGGDVTITDLPLVLEQIQGNVQANVPTGGRAQVRALSWG-IDQHVFP 141
Query: 138 LNPNIILGADVFYDASAFDDLFATITYLLQSSPGSVFITT 177
+ +++LGAD+ Y F L T+ +L G++++ +
Sbjct: 142 GDYDLVLGADIVYLEPTFPLLLGTLRHLC-GPHGTIYLAS 180
|
|
| UNIPROTKB|A4FV42 METTL21A "Protein-lysine methyltransferase METTL21A" [Bos taurus (taxid:9913)] | Back alignment and assigned GO terms |
|---|
Score = 172 (65.6 bits), Expect = 4.4e-13, P = 4.4e-13
Identities = 45/120 (37%), Positives = 67/120 (55%)
Query: 51 VWPCSVILAEYVWQQRYRFSGANVVELGAGTSLPGLVAAKVGSNVTLTDDSNRIEVLK-N 109
VW +V+LA Y+ G + VELGAGT L G+VAA +G++VT+TD +E LK N
Sbjct: 46 VWDAAVVLATYLEMGTVELRGCSAVELGAGTGLVGIVAALLGAHVTITDRKVALEFLKSN 105
Query: 110 MRRVCEMN-KLNCRVMGLTWGFLDASIFDLNP---NIILGADVFYDASAFDDLFATITYL 165
++ + + V LTWG ++ +P ++ILGAD+ Y F DL T+ +L
Sbjct: 106 VQANLPPHIQPKAVVKELTWG---QNLGRFSPGEFDLILGADIIYLEETFTDLLQTLEHL 162
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Prediction of Enzyme Commission (EC) Number
EC Number Prediction by Annotation Transfer from SWISS-PROT Entries
Original result of BLAST against SWISS-PROT
No confident hit for EC number transfering in SWISSPROT detected by BLAST
EC Number Prediction by Ezypred Server
Original result from Ezypred Server
Fail to connect to Ezypred Server
EC Number Prediction by EFICAz Software
No EC number assignment, probably not an enzyme!
Prediction of Functionally Associated Proteins
Functionally Associated Proteins Detected by STRING
Original result from the STRING server
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 | GSVIVG00011735001 | SubName- Full=Chromosome chr4 scaffold_333, whole genome shotgun sequence; (236 aa) | |||||||||
(Vitis vinifera) | |||||||||||
Predicted Functional Partners: | |||||||||||
| Sorry, there are no predicted associations at the current settings. | |||||||||||
Conserved Domains and Related Protein Families
Conserved Domains Detected by RPS-BLAST
Original result of RPS-BLAST against CDD database part I
| ID | Alignment Graph | Length |
Definition |
E-value |
| Query | 241 | |||
| pfam10294 | 170 | pfam10294, Methyltransf_16, Putative methyltransfe | 2e-21 | |
| COG3897 | 218 | COG3897, COG3897, Predicted methyltransferase [Gen | 2e-04 |
| >gnl|CDD|220679 pfam10294, Methyltransf_16, Putative methyltransferase | Back alignment and domain information |
|---|
Score = 87.0 bits (216), Expect = 2e-21
Identities = 51/165 (30%), Positives = 73/165 (44%), Gaps = 23/165 (13%)
Query: 32 KPSFSIAIIENMKEEYGLFVWPCSVILAEYVWQ----QRYRFSGANVVELGAGTSLPGLV 87
S + I E+ G VW +V+L++Y+ SG NV+ELG+GT L G+
Sbjct: 2 LDSPELKIEEDTGNGIGGHVWDAAVVLSKYLEMKITPGGNNLSGLNVLELGSGTGLVGIA 61
Query: 88 AAKV--GSNVTLTDDSNRIEVLKNMRRVCEMNKLN--CRVMGLTWG------FLDASIFD 137
A + G++VT+TD IE M++ E+N L+ L WG D D
Sbjct: 62 VALLLPGASVTITDLEEAIE---LMKKNIELNGLSSKVTAKVLDWGEDLPDDVFDPHPVD 118
Query: 138 LNPNIILGADVFYDASAFDDLFATITYLLQSSPGSVFITTYHNRS 182
L IL AD Y+ +F L T+ LL V + Y R
Sbjct: 119 L----ILAADCVYNEDSFPLLEKTLNDLLGKET--VILVAYKKRR 157
|
Length = 170 |
| >gnl|CDD|226413 COG3897, COG3897, Predicted methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Score = 40.9 bits (96), Expect = 2e-04
Identities = 31/135 (22%), Positives = 52/135 (38%), Gaps = 11/135 (8%)
Query: 47 YGLFVWPCSVILAEYVWQQRYRFSGANVVELGAGTSLPGLVAAKVGS-NVTLTD-DSNRI 104
+ F W +LA Y+ G V++LGAG+ L + AA+ G+ V D D
Sbjct: 56 FWAFAWAGGQVLARYIDDHPETVRGKRVLDLGAGSGLVAIAAARAGAAEVVAADIDPWLE 115
Query: 105 EVLKNMRRVCEMNKLNCRVMGLTWGFLDASIFDLNPNIILGADVFYDASAFDDLFATITY 164
+ +R N ++ + FDL +L D+FY+ + D L
Sbjct: 116 Q---AIRLNAAANGVSILFTHADLIGSPPA-FDL----LLAGDLFYNHTEADRLIPWKD- 166
Query: 165 LLQSSPGSVFITTYH 179
L + +V +
Sbjct: 167 RLAEAGAAVLVGDPG 181
|
Length = 218 |
Conserved Domains Detected by HHsearch
Original result of HHsearch against CDD database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 241 | |||
| PF10294 | 173 | Methyltransf_16: Putative methyltransferase; Inter | 99.96 | |
| COG2264 | 300 | PrmA Ribosomal protein L11 methylase [Translation, | 99.78 | |
| COG3897 | 218 | Predicted methyltransferase [General function pred | 99.76 | |
| KOG3201 | 201 | consensus Uncharacterized conserved protein [Funct | 99.76 | |
| PF06325 | 295 | PrmA: Ribosomal protein L11 methyltransferase (Prm | 99.76 | |
| COG2227 | 243 | UbiG 2-polyprenyl-3-methyl-5-hydroxy-6-metoxy-1,4- | 99.71 | |
| COG4123 | 248 | Predicted O-methyltransferase [General function pr | 99.7 | |
| KOG2793 | 248 | consensus Putative N2,N2-dimethylguanosine tRNA me | 99.69 | |
| PF05175 | 170 | MTS: Methyltransferase small domain; InterPro: IPR | 99.69 | |
| TIGR00537 | 179 | hemK_rel_arch HemK-related putative methylase. The | 99.67 | |
| PLN02396 | 322 | hexaprenyldihydroxybenzoate methyltransferase | 99.65 | |
| PRK00107 | 187 | gidB 16S rRNA methyltransferase GidB; Reviewed | 99.59 | |
| PRK11036 | 255 | putative S-adenosyl-L-methionine-dependent methylt | 99.59 | |
| PRK00517 | 250 | prmA ribosomal protein L11 methyltransferase; Revi | 99.59 | |
| PF12847 | 112 | Methyltransf_18: Methyltransferase domain; PDB: 3G | 99.59 | |
| KOG1270 | 282 | consensus Methyltransferases [Coenzyme transport a | 99.58 | |
| TIGR00406 | 288 | prmA ribosomal protein L11 methyltransferase. Ribo | 99.58 | |
| PF13847 | 152 | Methyltransf_31: Methyltransferase domain; PDB: 3T | 99.58 | |
| PRK14968 | 188 | putative methyltransferase; Provisional | 99.58 | |
| PRK14967 | 223 | putative methyltransferase; Provisional | 99.57 | |
| TIGR00477 | 195 | tehB tellurite resistance protein TehB. Part of a | 99.56 | |
| PLN02244 | 340 | tocopherol O-methyltransferase | 99.55 | |
| PRK11207 | 197 | tellurite resistance protein TehB; Provisional | 99.54 | |
| PRK15068 | 322 | tRNA mo(5)U34 methyltransferase; Provisional | 99.54 | |
| COG2263 | 198 | Predicted RNA methylase [Translation, ribosomal st | 99.53 | |
| PF08241 | 95 | Methyltransf_11: Methyltransferase domain; InterPr | 99.52 | |
| TIGR00452 | 314 | methyltransferase, putative. Known examples to dat | 99.51 | |
| PRK12335 | 287 | tellurite resistance protein TehB; Provisional | 99.51 | |
| PLN02336 | 475 | phosphoethanolamine N-methyltransferase | 99.51 | |
| PF13489 | 161 | Methyltransf_23: Methyltransferase domain; PDB: 3J | 99.5 | |
| PRK15001 | 378 | SAM-dependent 23S ribosomal RNA mG1835 methyltrans | 99.5 | |
| PRK13168 | 443 | rumA 23S rRNA m(5)U1939 methyltransferase; Reviewe | 99.5 | |
| TIGR00138 | 181 | gidB 16S rRNA methyltransferase GidB. GidB (glucos | 99.49 | |
| PRK05134 | 233 | bifunctional 3-demethylubiquinone-9 3-methyltransf | 99.49 | |
| PF03848 | 192 | TehB: Tellurite resistance protein TehB; InterPro: | 99.48 | |
| PTZ00098 | 263 | phosphoethanolamine N-methyltransferase; Provision | 99.47 | |
| PRK03522 | 315 | rumB 23S rRNA methyluridine methyltransferase; Rev | 99.47 | |
| TIGR03704 | 251 | PrmC_rel_meth putative protein-(glutamine-N5) meth | 99.46 | |
| PRK14966 | 423 | unknown domain/N5-glutamine S-adenosyl-L-methionin | 99.46 | |
| PLN02233 | 261 | ubiquinone biosynthesis methyltransferase | 99.45 | |
| COG2890 | 280 | HemK Methylase of polypeptide chain release factor | 99.45 | |
| TIGR01983 | 224 | UbiG ubiquinone biosynthesis O-methyltransferase. | 99.45 | |
| TIGR02085 | 374 | meth_trns_rumB 23S rRNA (uracil-5-)-methyltransfer | 99.45 | |
| PRK08287 | 187 | cobalt-precorrin-6Y C(15)-methyltransferase; Valid | 99.44 | |
| COG2813 | 300 | RsmC 16S RNA G1207 methylase RsmC [Translation, ri | 99.44 | |
| PRK10258 | 251 | biotin biosynthesis protein BioC; Provisional | 99.44 | |
| TIGR02021 | 219 | BchM-ChlM magnesium protoporphyrin O-methyltransfe | 99.43 | |
| PLN02585 | 315 | magnesium protoporphyrin IX methyltransferase | 99.42 | |
| TIGR02752 | 231 | MenG_heptapren 2-heptaprenyl-1,4-naphthoquinone me | 99.42 | |
| PRK00121 | 202 | trmB tRNA (guanine-N(7)-)-methyltransferase; Revie | 99.42 | |
| PF02353 | 273 | CMAS: Mycolic acid cyclopropane synthetase; InterP | 99.41 | |
| COG2230 | 283 | Cfa Cyclopropane fatty acid synthase and related m | 99.41 | |
| TIGR00536 | 284 | hemK_fam HemK family putative methylases. The gene | 99.4 | |
| PF01209 | 233 | Ubie_methyltran: ubiE/COQ5 methyltransferase famil | 99.4 | |
| TIGR03534 | 251 | RF_mod_PrmC protein-(glutamine-N5) methyltransfera | 99.39 | |
| PF08242 | 99 | Methyltransf_12: Methyltransferase domain; InterPr | 99.39 | |
| PRK00377 | 198 | cbiT cobalt-precorrin-6Y C(15)-methyltransferase; | 99.39 | |
| COG2226 | 238 | UbiE Methylase involved in ubiquinone/menaquinone | 99.39 | |
| smart00828 | 224 | PKS_MT Methyltransferase in polyketide synthase (P | 99.39 | |
| PRK11873 | 272 | arsM arsenite S-adenosylmethyltransferase; Reviewe | 99.38 | |
| PRK14103 | 255 | trans-aconitate 2-methyltransferase; Provisional | 99.38 | |
| PRK09489 | 342 | rsmC 16S ribosomal RNA m2G1207 methyltransferase; | 99.37 | |
| PRK01683 | 258 | trans-aconitate 2-methyltransferase; Provisional | 99.37 | |
| PF08003 | 315 | Methyltransf_9: Protein of unknown function (DUF16 | 99.36 | |
| PF13659 | 117 | Methyltransf_26: Methyltransferase domain; PDB: 3G | 99.36 | |
| COG4976 | 287 | Predicted methyltransferase (contains TPR repeat) | 99.36 | |
| KOG3191 | 209 | consensus Predicted N6-DNA-methyltransferase [Tran | 99.36 | |
| TIGR03533 | 284 | L3_gln_methyl protein-(glutamine-N5) methyltransfe | 99.36 | |
| PRK09328 | 275 | N5-glutamine S-adenosyl-L-methionine-dependent met | 99.36 | |
| TIGR00479 | 431 | rumA 23S rRNA (uracil-5-)-methyltransferase RumA. | 99.35 | |
| PRK11783 | 702 | rlmL 23S rRNA m(2)G2445 methyltransferase; Provisi | 99.35 | |
| PRK08317 | 241 | hypothetical protein; Provisional | 99.35 | |
| PRK00216 | 239 | ubiE ubiquinone/menaquinone biosynthesis methyltra | 99.35 | |
| PRK05031 | 362 | tRNA (uracil-5-)-methyltransferase; Validated | 99.33 | |
| PLN02490 | 340 | MPBQ/MSBQ methyltransferase | 99.33 | |
| PRK10909 | 199 | rsmD 16S rRNA m(2)G966-methyltransferase; Provisio | 99.31 | |
| PRK01544 | 506 | bifunctional N5-glutamine S-adenosyl-L-methionine- | 99.31 | |
| TIGR02469 | 124 | CbiT precorrin-6Y C5,15-methyltransferase (decarbo | 99.31 | |
| TIGR03587 | 204 | Pse_Me-ase pseudaminic acid biosynthesis-associate | 99.3 | |
| PLN02672 | 1082 | methionine S-methyltransferase | 99.3 | |
| TIGR02072 | 240 | BioC biotin biosynthesis protein BioC. This enzyme | 99.3 | |
| PRK11705 | 383 | cyclopropane fatty acyl phospholipid synthase; Pro | 99.3 | |
| PRK07580 | 230 | Mg-protoporphyrin IX methyl transferase; Validated | 99.3 | |
| PRK11805 | 307 | N5-glutamine S-adenosyl-L-methionine-dependent met | 99.28 | |
| TIGR02143 | 353 | trmA_only tRNA (uracil-5-)-methyltransferase. This | 99.28 | |
| PF05401 | 201 | NodS: Nodulation protein S (NodS); InterPro: IPR00 | 99.28 | |
| TIGR00080 | 215 | pimt protein-L-isoaspartate(D-aspartate) O-methylt | 99.27 | |
| PRK04266 | 226 | fibrillarin; Provisional | 99.27 | |
| PRK13944 | 205 | protein-L-isoaspartate O-methyltransferase; Provis | 99.27 | |
| PRK15451 | 247 | tRNA cmo(5)U34 methyltransferase; Provisional | 99.26 | |
| TIGR00095 | 189 | RNA methyltransferase, RsmD family. This model rep | 99.26 | |
| TIGR01177 | 329 | conserved hypothetical protein TIGR01177. This fam | 99.26 | |
| PF13649 | 101 | Methyltransf_25: Methyltransferase domain; PDB: 3B | 99.25 | |
| PRK05785 | 226 | hypothetical protein; Provisional | 99.25 | |
| TIGR01934 | 223 | MenG_MenH_UbiE ubiquinone/menaquinone biosynthesis | 99.24 | |
| PRK06202 | 232 | hypothetical protein; Provisional | 99.24 | |
| PRK07402 | 196 | precorrin-6B methylase; Provisional | 99.23 | |
| TIGR00091 | 194 | tRNA (guanine-N(7)-)-methyltransferase. In E. coli | 99.22 | |
| PRK15128 | 396 | 23S rRNA m(5)C1962 methyltransferase; Provisional | 99.22 | |
| TIGR00740 | 239 | methyltransferase, putative. A simple BLAST search | 99.22 | |
| KOG1499 | 346 | consensus Protein arginine N-methyltransferase PRM | 99.22 | |
| PLN02336 | 475 | phosphoethanolamine N-methyltransferase | 99.2 | |
| PRK06922 | 677 | hypothetical protein; Provisional | 99.2 | |
| PRK00312 | 212 | pcm protein-L-isoaspartate O-methyltransferase; Re | 99.17 | |
| PRK13942 | 212 | protein-L-isoaspartate O-methyltransferase; Provis | 99.16 | |
| smart00650 | 169 | rADc Ribosomal RNA adenine dimethylases. | 99.16 | |
| COG2265 | 432 | TrmA SAM-dependent methyltransferases related to t | 99.15 | |
| KOG1271 | 227 | consensus Methyltransferases [General function pre | 99.15 | |
| COG2242 | 187 | CobL Precorrin-6B methylase 2 [Coenzyme metabolism | 99.14 | |
| PRK14121 | 390 | tRNA (guanine-N(7)-)-methyltransferase; Provisiona | 99.14 | |
| TIGR03840 | 213 | TMPT_Se_Te thiopurine S-methyltransferase, Se/Te d | 99.13 | |
| PRK13255 | 218 | thiopurine S-methyltransferase; Reviewed | 99.12 | |
| PHA03411 | 279 | putative methyltransferase; Provisional | 99.11 | |
| smart00138 | 264 | MeTrc Methyltransferase, chemotaxis proteins. Meth | 99.11 | |
| TIGR02081 | 194 | metW methionine biosynthesis protein MetW. This pr | 99.1 | |
| PF05958 | 352 | tRNA_U5-meth_tr: tRNA (Uracil-5-)-methyltransferas | 99.1 | |
| KOG2920 | 282 | consensus Predicted methyltransferase [General fun | 99.09 | |
| PF07021 | 193 | MetW: Methionine biosynthesis protein MetW; InterP | 99.09 | |
| TIGR02716 | 306 | C20_methyl_CrtF C-20 methyltransferase BchU. Membe | 99.08 | |
| PRK11188 | 209 | rrmJ 23S rRNA methyltransferase J; Provisional | 99.07 | |
| PRK10901 | 427 | 16S rRNA methyltransferase B; Provisional | 99.06 | |
| KOG3010 | 261 | consensus Methyltransferase [General function pred | 99.05 | |
| cd02440 | 107 | AdoMet_MTases S-adenosylmethionine-dependent methy | 99.04 | |
| PRK14902 | 444 | 16S rRNA methyltransferase B; Provisional | 99.04 | |
| KOG1540 | 296 | consensus Ubiquinone biosynthesis methyltransferas | 99.03 | |
| KOG4300 | 252 | consensus Predicted methyltransferase [General fun | 99.03 | |
| PF03602 | 183 | Cons_hypoth95: Conserved hypothetical protein 95; | 99.01 | |
| TIGR03438 | 301 | probable methyltransferase. This model represents | 99.01 | |
| PRK11727 | 321 | 23S rRNA mA1618 methyltransferase; Provisional | 98.98 | |
| PHA03412 | 241 | putative methyltransferase; Provisional | 98.98 | |
| PLN03075 | 296 | nicotianamine synthase; Provisional | 98.97 | |
| PTZ00146 | 293 | fibrillarin; Provisional | 98.97 | |
| PLN02781 | 234 | Probable caffeoyl-CoA O-methyltransferase | 98.97 | |
| COG2518 | 209 | Pcm Protein-L-isoaspartate carboxylmethyltransfera | 98.96 | |
| TIGR00438 | 188 | rrmJ cell division protein FtsJ. | 98.96 | |
| TIGR00478 | 228 | tly hemolysin TlyA family protein. Hemolysins are | 98.95 | |
| COG4106 | 257 | Tam Trans-aconitate methyltransferase [General fun | 98.94 | |
| PRK00274 | 272 | ksgA 16S ribosomal RNA methyltransferase KsgA/Dim1 | 98.94 | |
| PRK04148 | 134 | hypothetical protein; Provisional | 98.92 | |
| PRK13943 | 322 | protein-L-isoaspartate O-methyltransferase; Provis | 98.91 | |
| KOG1500 | 517 | consensus Protein arginine N-methyltransferase CAR | 98.9 | |
| PRK11088 | 272 | rrmA 23S rRNA methyltransferase A; Provisional | 98.89 | |
| COG2519 | 256 | GCD14 tRNA(1-methyladenosine) methyltransferase an | 98.89 | |
| PRK14901 | 434 | 16S rRNA methyltransferase B; Provisional | 98.88 | |
| PRK14904 | 445 | 16S rRNA methyltransferase B; Provisional | 98.86 | |
| TIGR00563 | 426 | rsmB ribosomal RNA small subunit methyltransferase | 98.86 | |
| COG1092 | 393 | Predicted SAM-dependent methyltransferases [Genera | 98.83 | |
| KOG3420 | 185 | consensus Predicted RNA methylase [Translation, ri | 98.83 | |
| KOG2904 | 328 | consensus Predicted methyltransferase [General fun | 98.82 | |
| COG0742 | 187 | N6-adenine-specific methylase [DNA replication, re | 98.82 | |
| KOG1541 | 270 | consensus Predicted protein carboxyl methylase [Ge | 98.82 | |
| PTZ00338 | 294 | dimethyladenosine transferase-like protein; Provis | 98.81 | |
| TIGR00446 | 264 | nop2p NOL1/NOP2/sun family putative RNA methylase. | 98.8 | |
| PRK14896 | 258 | ksgA 16S ribosomal RNA methyltransferase KsgA/Dim1 | 98.8 | |
| KOG2187 | 534 | consensus tRNA uracil-5-methyltransferase and rela | 98.78 | |
| PRK00811 | 283 | spermidine synthase; Provisional | 98.77 | |
| PRK14903 | 431 | 16S rRNA methyltransferase B; Provisional | 98.77 | |
| PRK04457 | 262 | spermidine synthase; Provisional | 98.75 | |
| PRK04338 | 382 | N(2),N(2)-dimethylguanosine tRNA methyltransferase | 98.74 | |
| COG4122 | 219 | Predicted O-methyltransferase [General function pr | 98.72 | |
| PLN02476 | 278 | O-methyltransferase | 98.71 | |
| PF01135 | 209 | PCMT: Protein-L-isoaspartate(D-aspartate) O-methyl | 98.71 | |
| PF01596 | 205 | Methyltransf_3: O-methyltransferase; InterPro: IPR | 98.66 | |
| TIGR00308 | 374 | TRM1 tRNA(guanine-26,N2-N2) methyltransferase. Thi | 98.65 | |
| TIGR00755 | 253 | ksgA dimethyladenosine transferase. Alternate name | 98.65 | |
| PF08704 | 247 | GCD14: tRNA methyltransferase complex GCD14 subuni | 98.64 | |
| PRK03612 | 521 | spermidine synthase; Provisional | 98.63 | |
| PF10672 | 286 | Methyltrans_SAM: S-adenosylmethionine-dependent me | 98.62 | |
| PRK13256 | 226 | thiopurine S-methyltransferase; Reviewed | 98.61 | |
| KOG2899 | 288 | consensus Predicted methyltransferase [General fun | 98.59 | |
| PF05724 | 218 | TPMT: Thiopurine S-methyltransferase (TPMT); Inter | 98.58 | |
| PF01861 | 243 | DUF43: Protein of unknown function DUF43; InterPro | 98.57 | |
| PRK01581 | 374 | speE spermidine synthase; Validated | 98.55 | |
| TIGR00417 | 270 | speE spermidine synthase. the SpeE subunit of sper | 98.55 | |
| PF00891 | 241 | Methyltransf_2: O-methyltransferase; InterPro: IPR | 98.5 | |
| COG1041 | 347 | Predicted DNA modification methylase [DNA replicat | 98.49 | |
| PLN02366 | 308 | spermidine synthase | 98.48 | |
| PF02475 | 200 | Met_10: Met-10+ like-protein; InterPro: IPR003402 | 98.47 | |
| PF05219 | 265 | DREV: DREV methyltransferase; InterPro: IPR007884 | 98.46 | |
| PF05185 | 448 | PRMT5: PRMT5 arginine-N-methyltransferase; InterPr | 98.46 | |
| PLN02589 | 247 | caffeoyl-CoA O-methyltransferase | 98.46 | |
| COG0357 | 215 | GidB Predicted S-adenosylmethionine-dependent meth | 98.45 | |
| PF01170 | 179 | UPF0020: Putative RNA methylase family UPF0020; In | 98.44 | |
| KOG2361 | 264 | consensus Predicted methyltransferase [General fun | 98.39 | |
| PF09445 | 163 | Methyltransf_15: RNA cap guanine-N2 methyltransfer | 98.27 | |
| PF06080 | 204 | DUF938: Protein of unknown function (DUF938); Inte | 98.27 | |
| COG2520 | 341 | Predicted methyltransferase [General function pred | 98.22 | |
| PF01739 | 196 | CheR: CheR methyltransferase, SAM binding domain; | 98.17 | |
| COG2521 | 287 | Predicted archaeal methyltransferase [General func | 98.16 | |
| PF03291 | 331 | Pox_MCEL: mRNA capping enzyme; InterPro: IPR004971 | 98.15 | |
| PF02390 | 195 | Methyltransf_4: Putative methyltransferase ; Inter | 98.15 | |
| PRK11783 | 702 | rlmL 23S rRNA m(2)G2445 methyltransferase; Provisi | 98.14 | |
| KOG2497 | 262 | consensus Predicted methyltransferase [General fun | 98.14 | |
| COG1352 | 268 | CheR Methylase of chemotaxis methyl-accepting prot | 98.14 | |
| PRK10611 | 287 | chemotaxis methyltransferase CheR; Provisional | 98.1 | |
| PF02384 | 311 | N6_Mtase: N-6 DNA Methylase; InterPro: IPR003356 T | 98.09 | |
| PRK11760 | 357 | putative 23S rRNA C2498 ribose 2'-O-ribose methylt | 98.08 | |
| PF02527 | 184 | GidB: rRNA small subunit methyltransferase G; Inte | 98.08 | |
| COG1189 | 245 | Predicted rRNA methylase [Translation, ribosomal s | 98.04 | |
| PF05971 | 299 | Methyltransf_10: Protein of unknown function (DUF8 | 97.99 | |
| COG3963 | 194 | Phospholipid N-methyltransferase [Lipid metabolism | 97.99 | |
| COG0030 | 259 | KsgA Dimethyladenosine transferase (rRNA methylati | 97.98 | |
| COG0220 | 227 | Predicted S-adenosylmethionine-dependent methyltra | 97.97 | |
| KOG2940 | 325 | consensus Predicted methyltransferase [General fun | 97.96 | |
| PLN02823 | 336 | spermine synthase | 97.93 | |
| TIGR02987 | 524 | met_A_Alw26 type II restriction m6 adenine DNA met | 97.89 | |
| PLN02232 | 160 | ubiquinone biosynthesis methyltransferase | 97.82 | |
| PF05891 | 218 | Methyltransf_PK: AdoMet dependent proline di-methy | 97.8 | |
| PF09243 | 274 | Rsm22: Mitochondrial small ribosomal subunit Rsm22 | 97.79 | |
| TIGR01444 | 143 | fkbM_fam methyltransferase, FkbM family. Members o | 97.76 | |
| PF05148 | 219 | Methyltransf_8: Hypothetical methyltransferase; In | 97.75 | |
| PF00398 | 262 | RrnaAD: Ribosomal RNA adenine dimethylase; InterPr | 97.74 | |
| KOG0820 | 315 | consensus Ribosomal RNA adenine dimethylase [RNA p | 97.71 | |
| PRK11933 | 470 | yebU rRNA (cytosine-C(5)-)-methyltransferase RsmF; | 97.71 | |
| COG0116 | 381 | Predicted N6-adenine-specific DNA methylase [DNA r | 97.7 | |
| KOG1709 | 271 | consensus Guanidinoacetate methyltransferase and r | 97.69 | |
| COG4076 | 252 | Predicted RNA methylase [General function predicti | 97.68 | |
| COG0500 | 257 | SmtA SAM-dependent methyltransferases [Secondary m | 97.67 | |
| PRK00536 | 262 | speE spermidine synthase; Provisional | 97.64 | |
| KOG1975 | 389 | consensus mRNA cap methyltransferase [RNA processi | 97.63 | |
| PF08123 | 205 | DOT1: Histone methylation protein DOT1 ; InterPro: | 97.58 | |
| KOG1661 | 237 | consensus Protein-L-isoaspartate(D-aspartate) O-me | 97.55 | |
| PF07942 | 270 | N2227: N2227-like protein; InterPro: IPR012901 Thi | 97.55 | |
| PF12147 | 311 | Methyltransf_20: Putative methyltransferase; Inter | 97.54 | |
| PRK10742 | 250 | putative methyltransferase; Provisional | 97.52 | |
| KOG1501 | 636 | consensus Arginine N-methyltransferase [General fu | 97.51 | |
| PF13679 | 141 | Methyltransf_32: Methyltransferase domain | 97.5 | |
| PRK01544 | 506 | bifunctional N5-glutamine S-adenosyl-L-methionine- | 97.44 | |
| PF11968 | 219 | DUF3321: Putative methyltransferase (DUF3321); Int | 97.43 | |
| PRK00050 | 296 | 16S rRNA m(4)C1402 methyltranserfase; Provisional | 97.41 | |
| PF01564 | 246 | Spermine_synth: Spermine/spermidine synthase; Inte | 97.39 | |
| COG0293 | 205 | FtsJ 23S rRNA methylase [Translation, ribosomal st | 97.39 | |
| KOG2915 | 314 | consensus tRNA(1-methyladenosine) methyltransferas | 97.34 | |
| PHA01634 | 156 | hypothetical protein | 97.32 | |
| PF04816 | 205 | DUF633: Family of unknown function (DUF633) ; Inte | 97.31 | |
| KOG3045 | 325 | consensus Predicted RNA methylase involved in rRNA | 97.3 | |
| COG0421 | 282 | SpeE Spermidine synthase [Amino acid transport and | 97.22 | |
| PF03141 | 506 | Methyltransf_29: Putative S-adenosyl-L-methionine- | 97.14 | |
| PF01234 | 256 | NNMT_PNMT_TEMT: NNMT/PNMT/TEMT family; InterPro: I | 97.11 | |
| KOG3987 | 288 | consensus Uncharacterized conserved protein DREV/C | 97.1 | |
| COG1568 | 354 | Predicted methyltransferases [General function pre | 97.08 | |
| KOG1663 | 237 | consensus O-methyltransferase [Secondary metabolit | 96.96 | |
| TIGR03439 | 319 | methyl_EasF probable methyltransferase domain, Eas | 96.95 | |
| cd00315 | 275 | Cyt_C5_DNA_methylase Cytosine-C5 specific DNA meth | 96.82 | |
| COG0144 | 355 | Sun tRNA and rRNA cytosine-C5-methylases [Translat | 96.77 | |
| PF01728 | 181 | FtsJ: FtsJ-like methyltransferase; InterPro: IPR00 | 96.43 | |
| PF03059 | 276 | NAS: Nicotianamine synthase protein; InterPro: IPR | 96.25 | |
| PF01189 | 283 | Nol1_Nop2_Fmu: NOL1/NOP2/sun family; InterPro: IPR | 96.13 | |
| KOG1269 | 364 | consensus SAM-dependent methyltransferases [Lipid | 96.04 | |
| PF07757 | 112 | AdoMet_MTase: Predicted AdoMet-dependent methyltra | 95.92 | |
| KOG2730 | 263 | consensus Methylase [General function prediction o | 95.87 | |
| COG3129 | 292 | Predicted SAM-dependent methyltransferase [General | 95.85 | |
| KOG4589 | 232 | consensus Cell division protein FtsJ [Cell cycle c | 95.8 | |
| PF01269 | 229 | Fibrillarin: Fibrillarin; InterPro: IPR000692 Fibr | 95.73 | |
| KOG0024 | 354 | consensus Sorbitol dehydrogenase [Secondary metabo | 95.72 | |
| COG5459 | 484 | Predicted rRNA methylase [Translation, ribosomal s | 95.53 | |
| PF02005 | 377 | TRM: N2,N2-dimethylguanosine tRNA methyltransferas | 95.25 | |
| COG2384 | 226 | Predicted SAM-dependent methyltransferase [General | 95.18 | |
| PF04445 | 234 | SAM_MT: Putative SAM-dependent methyltransferase; | 95.0 | |
| KOG2078 | 495 | consensus tRNA modification enzyme [RNA processing | 94.94 | |
| KOG2352 | 482 | consensus Predicted spermine/spermidine synthase [ | 94.8 | |
| PF00145 | 335 | DNA_methylase: C-5 cytosine-specific DNA methylase | 94.79 | |
| PF13578 | 106 | Methyltransf_24: Methyltransferase domain; PDB: 3S | 94.7 | |
| COG4262 | 508 | Predicted spermidine synthase with an N-terminal m | 94.68 | |
| KOG3178 | 342 | consensus Hydroxyindole-O-methyltransferase and re | 94.37 | |
| KOG2798 | 369 | consensus Putative trehalase [Carbohydrate transpo | 94.15 | |
| COG1867 | 380 | TRM1 N2,N2-dimethylguanosine tRNA methyltransferas | 93.66 | |
| PF07091 | 251 | FmrO: Ribosomal RNA methyltransferase (FmrO); PDB: | 93.48 | |
| KOG1122 | 460 | consensus tRNA and rRNA cytosine-C5-methylase (nuc | 93.45 | |
| PRK09424 | 509 | pntA NAD(P) transhydrogenase subunit alpha; Provis | 93.3 | |
| TIGR00675 | 315 | dcm DNA-methyltransferase (dcm). All proteins in t | 92.9 | |
| COG1064 | 339 | AdhP Zn-dependent alcohol dehydrogenases [General | 92.74 | |
| PF10237 | 162 | N6-adenineMlase: Probable N6-adenine methyltransfe | 92.53 | |
| PF02636 | 252 | Methyltransf_28: Putative S-adenosyl-L-methionine- | 92.48 | |
| PF01555 | 231 | N6_N4_Mtase: DNA methylase; InterPro: IPR002941 Th | 92.46 | |
| KOG1227 | 351 | consensus Putative methyltransferase [General func | 92.4 | |
| PF03686 | 127 | UPF0146: Uncharacterised protein family (UPF0146); | 92.28 | |
| TIGR00006 | 305 | S-adenosyl-methyltransferase MraW. Genetics paper | 92.27 | |
| KOG1331 | 293 | consensus Predicted methyltransferase [General fun | 91.71 | |
| PF04672 | 267 | Methyltransf_19: S-adenosyl methyltransferase; Int | 91.59 | |
| COG1889 | 231 | NOP1 Fibrillarin-like rRNA methylase [Translation, | 91.47 | |
| PRK11524 | 284 | putative methyltransferase; Provisional | 91.42 | |
| COG1565 | 370 | Uncharacterized conserved protein [Function unknow | 91.36 | |
| PRK13699 | 227 | putative methylase; Provisional | 91.29 | |
| KOG2671 | 421 | consensus Putative RNA methylase [Replication, rec | 91.22 | |
| COG1255 | 129 | Uncharacterized protein conserved in archaea [Func | 90.96 | |
| COG0270 | 328 | Dcm Site-specific DNA methylase [DNA replication, | 90.85 | |
| KOG4058 | 199 | consensus Uncharacterized conserved protein [Funct | 90.64 | |
| PRK12548 | 289 | shikimate 5-dehydrogenase; Provisional | 89.76 | |
| KOG1201 | 300 | consensus Hydroxysteroid 17-beta dehydrogenase 11 | 89.63 | |
| PRK15001 | 378 | SAM-dependent 23S ribosomal RNA mG1835 methyltrans | 89.61 | |
| PF03141 | 506 | Methyltransf_29: Putative S-adenosyl-L-methionine- | 89.53 | |
| COG1063 | 350 | Tdh Threonine dehydrogenase and related Zn-depende | 89.5 | |
| COG2961 | 279 | ComJ Protein involved in catabolism of external DN | 89.28 | |
| PRK07523 | 255 | gluconate 5-dehydrogenase; Provisional | 88.98 | |
| PLN02668 | 386 | indole-3-acetate carboxyl methyltransferase | 88.85 | |
| COG1748 | 389 | LYS9 Saccharopine dehydrogenase and related protei | 88.52 | |
| PRK06124 | 256 | gluconate 5-dehydrogenase; Provisional | 88.51 | |
| PF04989 | 206 | CmcI: Cephalosporin hydroxylase; InterPro: IPR0070 | 88.37 | |
| KOG3115 | 249 | consensus Methyltransferase-like protein [General | 88.32 | |
| KOG0725 | 270 | consensus Reductases with broad range of substrate | 88.3 | |
| TIGR02354 | 200 | thiF_fam2 thiamine biosynthesis protein ThiF, fami | 87.89 | |
| PRK01438 | 480 | murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn | 87.48 | |
| PRK12549 | 284 | shikimate 5-dehydrogenase; Reviewed | 87.39 | |
| KOG2651 | 476 | consensus rRNA adenine N-6-methyltransferase [RNA | 86.91 | |
| PRK09880 | 343 | L-idonate 5-dehydrogenase; Provisional | 86.75 | |
| PRK10458 | 467 | DNA cytosine methylase; Provisional | 86.72 | |
| PF05206 | 259 | TRM13: Methyltransferase TRM13; InterPro: IPR00787 | 86.6 | |
| cd08281 | 371 | liver_ADH_like1 Zinc-dependent alcohol dehydrogena | 86.44 | |
| PRK08267 | 260 | short chain dehydrogenase; Provisional | 86.05 | |
| PRK07326 | 237 | short chain dehydrogenase; Provisional | 85.86 | |
| COG4301 | 321 | Uncharacterized conserved protein [Function unknow | 85.41 | |
| PRK07109 | 334 | short chain dehydrogenase; Provisional | 85.34 | |
| TIGR00561 | 511 | pntA NAD(P) transhydrogenase, alpha subunit. In so | 84.59 | |
| PLN02740 | 381 | Alcohol dehydrogenase-like | 84.59 | |
| COG0286 | 489 | HsdM Type I restriction-modification system methyl | 84.44 | |
| PF11599 | 246 | AviRa: RRNA methyltransferase AviRa; InterPro: IPR | 84.39 | |
| PRK06181 | 263 | short chain dehydrogenase; Provisional | 84.19 | |
| TIGR01809 | 282 | Shik-DH-AROM shikimate-5-dehydrogenase, fungal ARO | 83.95 | |
| PF03492 | 334 | Methyltransf_7: SAM dependent carboxyl methyltrans | 83.82 | |
| PRK13699 | 227 | putative methylase; Provisional | 83.75 | |
| PRK08265 | 261 | short chain dehydrogenase; Provisional | 83.58 | |
| PF06962 | 140 | rRNA_methylase: Putative rRNA methylase; InterPro: | 83.3 | |
| COG3392 | 330 | Adenine-specific DNA methylase [DNA replication, r | 82.89 | |
| PRK05872 | 296 | short chain dehydrogenase; Provisional | 82.89 | |
| PRK05867 | 253 | short chain dehydrogenase; Provisional | 82.84 | |
| PRK05650 | 270 | short chain dehydrogenase; Provisional | 82.49 | |
| PRK07454 | 241 | short chain dehydrogenase; Provisional | 82.46 | |
| PF02086 | 260 | MethyltransfD12: D12 class N6 adenine-specific DNA | 82.34 | |
| PF10354 | 166 | DUF2431: Domain of unknown function (DUF2431); Int | 82.24 | |
| PRK09291 | 257 | short chain dehydrogenase; Provisional | 82.09 | |
| TIGR01202 | 308 | bchC 2-desacetyl-2-hydroxyethyl bacteriochlorophyl | 81.97 | |
| TIGR02822 | 329 | adh_fam_2 zinc-binding alcohol dehydrogenase famil | 81.96 | |
| cd00401 | 413 | AdoHcyase S-adenosyl-L-homocysteine hydrolase (Ado | 81.88 | |
| PRK14027 | 283 | quinate/shikimate dehydrogenase; Provisional | 81.57 | |
| PRK06114 | 254 | short chain dehydrogenase; Provisional | 81.43 | |
| PRK12475 | 338 | thiamine/molybdopterin biosynthesis MoeB-like prot | 81.19 | |
| PRK12749 | 288 | quinate/shikimate dehydrogenase; Reviewed | 80.86 | |
| PRK08862 | 227 | short chain dehydrogenase; Provisional | 80.75 | |
| PRK07904 | 253 | short chain dehydrogenase; Provisional | 80.74 | |
| PRK11524 | 284 | putative methyltransferase; Provisional | 80.35 | |
| PF01488 | 135 | Shikimate_DH: Shikimate / quinate 5-dehydrogenase; | 80.23 | |
| PF07279 | 218 | DUF1442: Protein of unknown function (DUF1442); In | 80.19 |
| >PF10294 Methyltransf_16: Putative methyltransferase; InterPro: IPR019410 There are a number of unidentified genes that have a high probability of coding for methyltransferases | Back alignment and domain information |
|---|
Probab=99.96 E-value=9.9e-29 Score=200.16 Aligned_cols=144 Identities=35% Similarity=0.557 Sum_probs=94.4
Q ss_pred eEEEEeccCcCCcceEEeccHHHHHHHHHhc------cCCCCCCeEEEecCCCCHHHHHHHHh--CCEEEEEcCCCcHHH
Q 026274 35 FSIAIIENMKEEYGLFVWPCSVILAEYVWQQ------RYRFSGANVVELGAGTSLPGLVAAKV--GSNVTLTDDSNRIEV 106 (241)
Q Consensus 35 ~~i~i~~~~~~~~g~~~W~~s~~L~~~l~~~------~~~~~~~~VLElGcGtGl~sl~la~~--g~~V~~tD~~~~~~~ 106 (241)
.+|.|.+....++|.++|+++++|++||..+ ...+++++|||||||+|++|+++++. +++|++||+++ +
T Consensus 4 ~~l~i~e~~~~~~G~~vW~aa~~La~~l~~~~~~~~~~~~~~~~~VLELGaG~Gl~gi~~a~~~~~~~Vv~TD~~~---~ 80 (173)
T PF10294_consen 4 KTLQIEEDWGDGTGGKVWPAALVLARYLLSHSESEFNPELFRGKRVLELGAGTGLPGIAAAKLFGAARVVLTDYNE---V 80 (173)
T ss_dssp -------------------HHHHHHHHHHH-------GGGTTTSEEEETT-TTSHHHHHHHHT-T-SEEEEEE-S----H
T ss_pred cccccccccccCCcEEEechHHHHHHHHHHhcccccchhhcCCceEEEECCccchhHHHHHhccCCceEEEeccch---h
Confidence 4677888888899999999999999999984 56789999999999999999999999 55999999994 9
Q ss_pred HHHHHHHHHHcC----CceEEEEeecCCCCc-C-cCCCCCcEEEEcCCcCCCccHHHHHHHHHHHhhcCCCeEEEEEeec
Q 026274 107 LKNMRRVCEMNK----LNCRVMGLTWGFLDA-S-IFDLNPNIILGADVFYDASAFDDLFATITYLLQSSPGSVFITTYHN 180 (241)
Q Consensus 107 l~~~~~n~~~n~----~~~~~~~l~w~~~~~-~-~~~~~fDlIl~~dvly~~~~~~~ll~~~~~lL~~~~~~~~~~~~~~ 180 (241)
+++++.|++.|+ .++.+..++|++... . ....+||+|+++||+|+...+++|++++.+++++++. +++++..
T Consensus 81 l~~l~~Ni~~N~~~~~~~v~v~~L~Wg~~~~~~~~~~~~~D~IlasDv~Y~~~~~~~L~~tl~~ll~~~~~--vl~~~~~ 158 (173)
T PF10294_consen 81 LELLRRNIELNGSLLDGRVSVRPLDWGDELDSDLLEPHSFDVILASDVLYDEELFEPLVRTLKRLLKPNGK--VLLAYKR 158 (173)
T ss_dssp HHHHHHHHHTT--------EEEE--TTS-HHHHHHS-SSBSEEEEES--S-GGGHHHHHHHHHHHBTT-TT--EEEEEE-
T ss_pred hHHHHHHHHhccccccccccCcEEEecCcccccccccccCCEEEEecccchHHHHHHHHHHHHHHhCCCCE--EEEEeCE
Confidence 999999999987 478899999998431 1 1235899999999999999999999999999985544 8888887
Q ss_pred cCc
Q 026274 181 RSG 183 (241)
Q Consensus 181 r~~ 183 (241)
|..
T Consensus 159 R~~ 161 (173)
T PF10294_consen 159 RRK 161 (173)
T ss_dssp S-T
T ss_pred ecH
Confidence 754
|
They make up approximately 0.6-1.6% of the genes in the yeast, human, mouse, Drosophila melanogaster, Caenorhabditis elegans, Arabidopsis thaliana, and Escherichia coli genomes []. This entry represents putative nicotinamide N-methyltransferases involved in rDNA silencing and in lifespan determination. ; PDB: 3BZB_A. |
| >COG2264 PrmA Ribosomal protein L11 methylase [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=99.78 E-value=9.9e-18 Score=144.92 Aligned_cols=159 Identities=18% Similarity=0.206 Sum_probs=121.6
Q ss_pred CceEEEEeccCcCCcceEEeccHHHHHHHHHhccCCCCCCeEEEecCCCCHHHHHHHHhCC-EEEEEcCCCcHHHHHHHH
Q 026274 33 PSFSIAIIENMKEEYGLFVWPCSVILAEYVWQQRYRFSGANVVELGAGTSLPGLVAAKVGS-NVTLTDDSNRIEVLKNMR 111 (241)
Q Consensus 33 ~~~~i~i~~~~~~~~g~~~W~~s~~L~~~l~~~~~~~~~~~VLElGcGtGl~sl~la~~g~-~V~~tD~~~~~~~l~~~~ 111 (241)
..+.|++....+.++|++ |.+.+..++|.+... ++++|||+|||+|++|++++++|+ +|+++|++| .+++.++
T Consensus 129 ~~~~i~lDPGlAFGTG~H--pTT~lcL~~Le~~~~--~g~~vlDvGcGSGILaIAa~kLGA~~v~g~DiDp--~AV~aa~ 202 (300)
T COG2264 129 DELNIELDPGLAFGTGTH--PTTSLCLEALEKLLK--KGKTVLDVGCGSGILAIAAAKLGAKKVVGVDIDP--QAVEAAR 202 (300)
T ss_pred CceEEEEccccccCCCCC--hhHHHHHHHHHHhhc--CCCEEEEecCChhHHHHHHHHcCCceEEEecCCH--HHHHHHH
Confidence 467888888888888887 999999999987543 889999999999999999999999 699999996 6999999
Q ss_pred HHHHHcCCceEEEEeecCCCCcCcCCCCCcEEEEcCCcCCCccHHHHHHHHHHHhhcCCCeEEEEEeeccCchhHHHHHH
Q 026274 112 RVCEMNKLNCRVMGLTWGFLDASIFDLNPNIILGADVFYDASAFDDLFATITYLLQSSPGSVFITTYHNRSGHHLIEFLM 191 (241)
Q Consensus 112 ~n~~~n~~~~~~~~l~w~~~~~~~~~~~fDlIl~~dvly~~~~~~~ll~~~~~lL~~~~~~~~~~~~~~r~~~~~~~~~~ 191 (241)
+|++.|++.... ...+..........+||+|+|+= -...+..|...+.++++ |+|.++++---......+....
T Consensus 203 eNa~~N~v~~~~-~~~~~~~~~~~~~~~~DvIVANI---LA~vl~~La~~~~~~lk--pgg~lIlSGIl~~q~~~V~~a~ 276 (300)
T COG2264 203 ENARLNGVELLV-QAKGFLLLEVPENGPFDVIVANI---LAEVLVELAPDIKRLLK--PGGRLILSGILEDQAESVAEAY 276 (300)
T ss_pred HHHHHcCCchhh-hcccccchhhcccCcccEEEehh---hHHHHHHHHHHHHHHcC--CCceEEEEeehHhHHHHHHHHH
Confidence 999999997411 22222222222335899999862 23456688888999998 6777777754444455566666
Q ss_pred HHcCCEEEEEec
Q 026274 192 VKWGLKCVKLVD 203 (241)
Q Consensus 192 ~~~g~~~~~i~~ 203 (241)
.+.||.+.....
T Consensus 277 ~~~gf~v~~~~~ 288 (300)
T COG2264 277 EQAGFEVVEVLE 288 (300)
T ss_pred HhCCCeEeEEEe
Confidence 788999988743
|
|
| >COG3897 Predicted methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.76 E-value=1e-18 Score=140.70 Aligned_cols=162 Identities=19% Similarity=0.258 Sum_probs=123.8
Q ss_pred cCCCCcceEEEEeecCCCCC-CceEEEEecc-CcCCcceEEeccHHHHHHHHHhccCCCCCCeEEEecCCCCHHHHHHHH
Q 026274 13 MTDKHMTTVSQHYFVDESDK-PSFSIAIIEN-MKEEYGLFVWPCSVILAEYVWQQRYRFSGANVVELGAGTSLPGLVAAK 90 (241)
Q Consensus 13 ~~~~~~~~~~~~~f~~~~~~-~~~~i~i~~~-~~~~~g~~~W~~s~~L~~~l~~~~~~~~~~~VLElGcGtGl~sl~la~ 90 (241)
+++|..+.++-++-...++. ......+..- ....+|...|.+++.|++|+..+++..+|++|||+|+|+|+.++++++
T Consensus 20 ~p~p~~Pe~rl~la~~~~~l~~~~~e~l~~ig~pPpfwa~~WagG~~lAR~i~~~PetVrgkrVLd~gagsgLvaIAaa~ 99 (218)
T COG3897 20 LPPPHVPEIRLHLADEAHELWDRAKEELRLIGLPPPFWAFAWAGGQVLARYIDDHPETVRGKRVLDLGAGSGLVAIAAAR 99 (218)
T ss_pred CCCCCCchhheeecccccchHhHhHHHHHhcCCCchHHHHHHhhhHHHHHHHhcCccccccceeeecccccChHHHHHHH
Confidence 45666666666655443321 1111111111 124589999999999999999999999999999999999999999999
Q ss_pred hCC-EEEEEcCCCcHHHHHHHHHHHHHcCCceEEEEeecCCCCcCcCCCCCcEEEEcCCcCCCccHHHHHHHHHHHhhcC
Q 026274 91 VGS-NVTLTDDSNRIEVLKNMRRVCEMNKLNCRVMGLTWGFLDASIFDLNPNIILGADVFYDASAFDDLFATITYLLQSS 169 (241)
Q Consensus 91 ~g~-~V~~tD~~~~~~~l~~~~~n~~~n~~~~~~~~l~w~~~~~~~~~~~fDlIl~~dvly~~~~~~~ll~~~~~lL~~~ 169 (241)
.|+ .|+.+|+.+ -..++++.|++.|+..+.+...+... .+..||+|+++|++|+......++.+..++..
T Consensus 100 aGA~~v~a~d~~P--~~~~ai~lNa~angv~i~~~~~d~~g-----~~~~~Dl~LagDlfy~~~~a~~l~~~~~~l~~-- 170 (218)
T COG3897 100 AGAAEVVAADIDP--WLEQAIRLNAAANGVSILFTHADLIG-----SPPAFDLLLAGDLFYNHTEADRLIPWKDRLAE-- 170 (218)
T ss_pred hhhHHHHhcCCCh--HHHHHhhcchhhccceeEEeeccccC-----CCcceeEEEeeceecCchHHHHHHHHHHHHHh--
Confidence 998 799999996 59999999999999998888766543 23479999999999999999999997776654
Q ss_pred CCeEEEEEeeccCc
Q 026274 170 PGSVFITTYHNRSG 183 (241)
Q Consensus 170 ~~~~~~~~~~~r~~ 183 (241)
.|..+++..+.|..
T Consensus 171 ~g~~vlvgdp~R~~ 184 (218)
T COG3897 171 AGAAVLVGDPGRAY 184 (218)
T ss_pred CCCEEEEeCCCCCC
Confidence 45555555555543
|
|
| >KOG3201 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.76 E-value=4.3e-19 Score=138.60 Aligned_cols=150 Identities=27% Similarity=0.415 Sum_probs=113.0
Q ss_pred cc-eEEeccHHHHHHHHHhccCCCCCCeEEEecCC-CCHHHHHHHHhC--CEEEEEcCCCcHHHHHHHHHHHHHcCCc--
Q 026274 47 YG-LFVWPCSVILAEYVWQQRYRFSGANVVELGAG-TSLPGLVAAKVG--SNVTLTDDSNRIEVLKNMRRVCEMNKLN-- 120 (241)
Q Consensus 47 ~g-~~~W~~s~~L~~~l~~~~~~~~~~~VLElGcG-tGl~sl~la~~g--~~V~~tD~~~~~~~l~~~~~n~~~n~~~-- 120 (241)
+| .++||+...|+.++++++..++|++|||||.| ||+.|+++|... ..|..||.++ +.++++++....|...
T Consensus 5 tgnvciwpseeala~~~l~~~n~~rg~~ilelgggft~laglmia~~a~~~~v~ltdgne--~svrnv~ki~~~n~~s~~ 82 (201)
T KOG3201|consen 5 TGNVCIWPSEEALAWTILRDPNKIRGRRILELGGGFTGLAGLMIACKAPDSSVWLTDGNE--ESVRNVEKIRNSNMASSL 82 (201)
T ss_pred CCcEEecccHHHHHHHHHhchhHHhHHHHHHhcCchhhhhhhheeeecCCceEEEecCCH--HHHHHHHHHHhccccccc
Confidence 44 58999999999999999999999999999999 999999999874 3899999996 6999999877777321
Q ss_pred eEEEEeecCCCC--cCcCCCCCcEEEEcCCcCCCccHHHHHHHHHHHhhcCCCeEEEEEeeccCchhHHHH--HHHHcCC
Q 026274 121 CRVMGLTWGFLD--ASIFDLNPNIILGADVFYDASAFDDLFATITYLLQSSPGSVFITTYHNRSGHHLIEF--LMVKWGL 196 (241)
Q Consensus 121 ~~~~~l~w~~~~--~~~~~~~fDlIl~~dvly~~~~~~~ll~~~~~lL~~~~~~~~~~~~~~r~~~~~~~~--~~~~~g~ 196 (241)
-+...+.|.... .......||+|+++||+|..+..+.|+++++.+|+|.+.++ +++ +|++..+..| ..+..||
T Consensus 83 tsc~vlrw~~~~aqsq~eq~tFDiIlaADClFfdE~h~sLvdtIk~lL~p~g~Al-~fs--PRRg~sL~kF~de~~~~gf 159 (201)
T KOG3201|consen 83 TSCCVLRWLIWGAQSQQEQHTFDIILAADCLFFDEHHESLVDTIKSLLRPSGRAL-LFS--PRRGQSLQKFLDEVGTVGF 159 (201)
T ss_pred ceehhhHHHHhhhHHHHhhCcccEEEeccchhHHHHHHHHHHHHHHHhCccccee-Eec--CcccchHHHHHHHHHhcee
Confidence 122233333222 22234589999999999999999999999999999755533 333 3444444444 3577888
Q ss_pred EEEEE
Q 026274 197 KCVKL 201 (241)
Q Consensus 197 ~~~~i 201 (241)
.+..-
T Consensus 160 ~v~l~ 164 (201)
T KOG3201|consen 160 TVCLE 164 (201)
T ss_pred EEEec
Confidence 76654
|
|
| >PF06325 PrmA: Ribosomal protein L11 methyltransferase (PrmA); InterPro: IPR010456 This family consists of several Ribosomal protein L11 methyltransferase sequences | Back alignment and domain information |
|---|
Probab=99.76 E-value=1.6e-17 Score=144.47 Aligned_cols=153 Identities=20% Similarity=0.242 Sum_probs=114.5
Q ss_pred CceEEEEeccCcCCcceEEeccHHHHHHHHHhccCCCCCCeEEEecCCCCHHHHHHHHhCC-EEEEEcCCCcHHHHHHHH
Q 026274 33 PSFSIAIIENMKEEYGLFVWPCSVILAEYVWQQRYRFSGANVVELGAGTSLPGLVAAKVGS-NVTLTDDSNRIEVLKNMR 111 (241)
Q Consensus 33 ~~~~i~i~~~~~~~~g~~~W~~s~~L~~~l~~~~~~~~~~~VLElGcGtGl~sl~la~~g~-~V~~tD~~~~~~~l~~~~ 111 (241)
....|.|...++.++|.+ +++.+..++|.+. ..++++|||+|||||++|++++++|+ +|+++|+++ .+++.++
T Consensus 128 ~~~~I~idPg~AFGTG~H--~TT~lcl~~l~~~--~~~g~~vLDvG~GSGILaiaA~klGA~~v~a~DiDp--~Av~~a~ 201 (295)
T PF06325_consen 128 DEIVIEIDPGMAFGTGHH--PTTRLCLELLEKY--VKPGKRVLDVGCGSGILAIAAAKLGAKKVVAIDIDP--LAVEAAR 201 (295)
T ss_dssp TSEEEEESTTSSS-SSHC--HHHHHHHHHHHHH--SSTTSEEEEES-TTSHHHHHHHHTTBSEEEEEESSC--HHHHHHH
T ss_pred CcEEEEECCCCcccCCCC--HHHHHHHHHHHHh--ccCCCEEEEeCCcHHHHHHHHHHcCCCeEEEecCCH--HHHHHHH
Confidence 567888888888888888 9999999999876 45778999999999999999999999 799999997 5999999
Q ss_pred HHHHHcCCceEEEEeecCCCCcCcCCCCCcEEEEcCCcCCCccHHHHHHHHHHHhhcCCCeEEEEEeeccCchhHHHHHH
Q 026274 112 RVCEMNKLNCRVMGLTWGFLDASIFDLNPNIILGADVFYDASAFDDLFATITYLLQSSPGSVFITTYHNRSGHHLIEFLM 191 (241)
Q Consensus 112 ~n~~~n~~~~~~~~l~w~~~~~~~~~~~fDlIl~~dvly~~~~~~~ll~~~~~lL~~~~~~~~~~~~~~r~~~~~~~~~~ 191 (241)
+|+..|++..++.... .......+||+|+|+ -..+.+..++..+.++|+ ++|.++++--.......+...+
T Consensus 202 ~N~~~N~~~~~~~v~~----~~~~~~~~~dlvvAN---I~~~vL~~l~~~~~~~l~--~~G~lIlSGIl~~~~~~v~~a~ 272 (295)
T PF06325_consen 202 ENAELNGVEDRIEVSL----SEDLVEGKFDLVVAN---ILADVLLELAPDIASLLK--PGGYLILSGILEEQEDEVIEAY 272 (295)
T ss_dssp HHHHHTT-TTCEEESC----TSCTCCS-EEEEEEE---S-HHHHHHHHHHCHHHEE--EEEEEEEEEEEGGGHHHHHHHH
T ss_pred HHHHHcCCCeeEEEEE----ecccccccCCEEEEC---CCHHHHHHHHHHHHHhhC--CCCEEEEccccHHHHHHHHHHH
Confidence 9999999876554321 122234789999986 223456678888888998 5677666654444444444445
Q ss_pred HHcCCEEEEE
Q 026274 192 VKWGLKCVKL 201 (241)
Q Consensus 192 ~~~g~~~~~i 201 (241)
++ ||.+...
T Consensus 273 ~~-g~~~~~~ 281 (295)
T PF06325_consen 273 KQ-GFELVEE 281 (295)
T ss_dssp HT-TEEEEEE
T ss_pred HC-CCEEEEE
Confidence 55 9998765
|
Its genetic determinant is prmA, which forms a bifunctional operon with the downstream panF gene []. The role of L11 methylation in ribosome function is, as yet, unknown. Deletion of the prmA gene in Escherichia coli showed no obvious effect [] except for the production of undermethylated forms of L11 []. Methylation is the most common post-transcriptional modification to ribosomal proteins in all organisms. PrmA is the only bacterial enzyme that catalyses the methylation of a ribosomal protein [].; GO: 0008276 protein methyltransferase activity, 0006479 protein methylation, 0005737 cytoplasm; PDB: 3GRZ_B 1F3L_A 2NXJ_B 3CJT_I 3CJQ_G 2NXE_A 2NXC_A 2ZBP_A 3EGV_A 3CJS_A .... |
| >COG2227 UbiG 2-polyprenyl-3-methyl-5-hydroxy-6-metoxy-1,4-benzoquinol methylase [Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=99.71 E-value=4.2e-17 Score=135.87 Aligned_cols=113 Identities=17% Similarity=0.238 Sum_probs=95.3
Q ss_pred CCCCeEEEecCCCCHHHHHHHHhCCEEEEEcCCCcHHHHHHHHHHHHHcCCceEEEEeecCCCCcCcCCCCCcEEEEcCC
Q 026274 69 FSGANVVELGAGTSLPGLVAAKVGSNVTLTDDSNRIEVLKNMRRVCEMNKLNCRVMGLTWGFLDASIFDLNPNIILGADV 148 (241)
Q Consensus 69 ~~~~~VLElGcGtGl~sl~la~~g~~V~~tD~~~~~~~l~~~~~n~~~n~~~~~~~~l~w~~~~~~~~~~~fDlIl~~dv 148 (241)
..|++|||+|||-|+++..+|+.|++|+++|+++ ++++.++..+..+++.+.......++.... .++||+|++.+|
T Consensus 58 l~g~~vLDvGCGgG~Lse~mAr~Ga~VtgiD~se--~~I~~Ak~ha~e~gv~i~y~~~~~edl~~~--~~~FDvV~cmEV 133 (243)
T COG2227 58 LPGLRVLDVGCGGGILSEPLARLGASVTGIDASE--KPIEVAKLHALESGVNIDYRQATVEDLASA--GGQFDVVTCMEV 133 (243)
T ss_pred CCCCeEEEecCCccHhhHHHHHCCCeeEEecCCh--HHHHHHHHhhhhccccccchhhhHHHHHhc--CCCccEEEEhhH
Confidence 6889999999999999999999999999999997 699999999999998866555444433221 269999999999
Q ss_pred cCCCccHHHHHHHHHHHhhcCCCeEEEEEeeccCchhHH
Q 026274 149 FYDASAFDDLFATITYLLQSSPGSVFITTYHNRSGHHLI 187 (241)
Q Consensus 149 ly~~~~~~~ll~~~~~lL~~~~~~~~~~~~~~r~~~~~~ 187 (241)
+.|.++++.+++.+.+++| |+|.++++...|+.....
T Consensus 134 lEHv~dp~~~~~~c~~lvk--P~G~lf~STinrt~ka~~ 170 (243)
T COG2227 134 LEHVPDPESFLRACAKLVK--PGGILFLSTINRTLKAYL 170 (243)
T ss_pred HHccCCHHHHHHHHHHHcC--CCcEEEEeccccCHHHHH
Confidence 9999999999999999998 778888887776665433
|
|
| >COG4123 Predicted O-methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.70 E-value=1e-15 Score=129.19 Aligned_cols=170 Identities=16% Similarity=0.203 Sum_probs=128.1
Q ss_pred CcceEEeccHHHHHHHHHhccCCCCCCeEEEecCCCCHHHHHHHHh-C-CEEEEEcCCCcHHHHHHHHHHHHHcCC--ce
Q 026274 46 EYGLFVWPCSVILAEYVWQQRYRFSGANVVELGAGTSLPGLVAAKV-G-SNVTLTDDSNRIEVLKNMRRVCEMNKL--NC 121 (241)
Q Consensus 46 ~~g~~~W~~s~~L~~~l~~~~~~~~~~~VLElGcGtGl~sl~la~~-g-~~V~~tD~~~~~~~l~~~~~n~~~n~~--~~ 121 (241)
..|++.=-.+++|+.|... ...++|||||||+|++|+++|++ . ++++++++.+ ++.+.+++|++.|++ ++
T Consensus 24 ~~~~~~~~DaiLL~~~~~~----~~~~~IlDlGaG~G~l~L~la~r~~~a~I~~VEiq~--~~a~~A~~nv~ln~l~~ri 97 (248)
T COG4123 24 RCGFRYGTDAILLAAFAPV----PKKGRILDLGAGNGALGLLLAQRTEKAKIVGVEIQE--EAAEMAQRNVALNPLEERI 97 (248)
T ss_pred CCccccccHHHHHHhhccc----ccCCeEEEecCCcCHHHHHHhccCCCCcEEEEEeCH--HHHHHHHHHHHhCcchhce
Confidence 4778888899999999753 23679999999999999999998 4 6999999995 799999999999987 56
Q ss_pred EEEEeecCCCCcCcCCCCCcEEEEcCCcCCCc------------------cHHHHHHHHHHHhhcCCCeEEEEEeeccCc
Q 026274 122 RVMGLTWGFLDASIFDLNPNIILGADVFYDAS------------------AFDDLFATITYLLQSSPGSVFITTYHNRSG 183 (241)
Q Consensus 122 ~~~~l~w~~~~~~~~~~~fDlIl~~dvly~~~------------------~~~~ll~~~~~lL~~~~~~~~~~~~~~r~~ 183 (241)
++.+.|..+........+||+|++++++|... +++.+++...++|+ ++|.+.+.++....
T Consensus 98 ~v~~~Di~~~~~~~~~~~fD~Ii~NPPyf~~~~~~~~~~~~~~Ar~e~~~~le~~i~~a~~~lk--~~G~l~~V~r~erl 175 (248)
T COG4123 98 QVIEADIKEFLKALVFASFDLIICNPPYFKQGSRLNENPLRAIARHEITLDLEDLIRAAAKLLK--PGGRLAFVHRPERL 175 (248)
T ss_pred eEehhhHHHhhhcccccccCEEEeCCCCCCCccccCcChhhhhhhhhhcCCHHHHHHHHHHHcc--CCCEEEEEecHHHH
Confidence 77777776665444444799999999998753 58999999999998 55666666555333
Q ss_pred hhHHHHHHHHcCCEEEEEecCCCCCCcccccccCCCeEEEEEEeccC
Q 026274 184 HHLIEFLMVKWGLKCVKLVDGFSFLPHYKARELNGNIQLAEIVLNHE 230 (241)
Q Consensus 184 ~~~~~~~~~~~g~~~~~i~~~~~~~p~~~~~~~~~~~~l~~i~~~~~ 230 (241)
. .+..++++++|.+.++...++.. .-..++-+++..+..+
T Consensus 176 ~-ei~~~l~~~~~~~k~i~~V~p~~------~k~A~~vLv~~~k~~~ 215 (248)
T COG4123 176 A-EIIELLKSYNLEPKRIQFVYPKI------GKAANRVLVEAIKGGK 215 (248)
T ss_pred H-HHHHHHHhcCCCceEEEEecCCC------CCcceEEEEEEecCCC
Confidence 2 34556789999998884433322 3334566666655443
|
|
| >KOG2793 consensus Putative N2,N2-dimethylguanosine tRNA methyltransferase [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.69 E-value=5.7e-16 Score=130.79 Aligned_cols=144 Identities=31% Similarity=0.534 Sum_probs=112.0
Q ss_pred eEEEEeccCcCCcceEEeccHHHHHHHHHhccC------CC-----CCCeEEEecCCCCHHHHHHHH-hCCEEEEEcCCC
Q 026274 35 FSIAIIENMKEEYGLFVWPCSVILAEYVWQQRY------RF-----SGANVVELGAGTSLPGLVAAK-VGSNVTLTDDSN 102 (241)
Q Consensus 35 ~~i~i~~~~~~~~g~~~W~~s~~L~~~l~~~~~------~~-----~~~~VLElGcGtGl~sl~la~-~g~~V~~tD~~~ 102 (241)
.++.+......+.+..+|+++-.++.++..+.. .. +..+|||||+|||+.|+.+|. .+++|+.||...
T Consensus 40 ~~~~~~~~~~~~~~~~~w~~~~~la~~~~~~~~~~~~~~~~~g~~~~~~~vlELGsGtglvG~~aa~~~~~~v~ltD~~~ 119 (248)
T KOG2793|consen 40 SKTVIESGLEQGISAYLWSCATTLAQPLWERRRDSELTATLIGFKTKYINVLELGSGTGLVGILAALLLGAEVVLTDLPK 119 (248)
T ss_pred eeeecccccccceeeEEeehhhccchhhhhhhcCchhhhccccccccceeEEEecCCccHHHHHHHHHhcceeccCCchh
Confidence 344444445678899999999999999887654 22 245699999999999999999 578999999986
Q ss_pred cHHHHHHHHHHHHHc-----C--CceEEEEeecCCCCcCcC-CCC-CcEEEEcCCcCCCccHHHHHHHHHHHhhcCCCeE
Q 026274 103 RIEVLKNMRRVCEMN-----K--LNCRVMGLTWGFLDASIF-DLN-PNIILGADVFYDASAFDDLFATITYLLQSSPGSV 173 (241)
Q Consensus 103 ~~~~l~~~~~n~~~n-----~--~~~~~~~l~w~~~~~~~~-~~~-fDlIl~~dvly~~~~~~~ll~~~~~lL~~~~~~~ 173 (241)
.+.++..|...| + ..+.+..++|++...... ... +|+|+++||+|++...+.|+.++..+|..+ ++
T Consensus 120 ---~~~~L~~~~~~~~~~l~~~g~~v~v~~L~Wg~~~~~~~~~~~~~DlilasDvvy~~~~~e~Lv~tla~ll~~~--~~ 194 (248)
T KOG2793|consen 120 ---VVENLKFNRDKNNIALNQLGGSVIVAILVWGNALDVSFRLPNPFDLILASDVVYEEESFEGLVKTLAFLLAKD--GT 194 (248)
T ss_pred ---hHHHHHHhhhhhhhhhhhcCCceeEEEEecCCcccHhhccCCcccEEEEeeeeecCCcchhHHHHHHHHHhcC--Ce
Confidence 666665554433 2 267889999998764322 224 899999999999999999999999999844 37
Q ss_pred EEEEeeccCc
Q 026274 174 FITTYHNRSG 183 (241)
Q Consensus 174 ~~~~~~~r~~ 183 (241)
+++.++.|..
T Consensus 195 i~l~~~lr~~ 204 (248)
T KOG2793|consen 195 IFLAYPLRRD 204 (248)
T ss_pred EEEEEecccc
Confidence 8888888775
|
|
| >PF05175 MTS: Methyltransferase small domain; InterPro: IPR007848 This domain is found in ribosomal RNA small subunit methyltransferase C and in other methyltransferases | Back alignment and domain information |
|---|
Probab=99.69 E-value=1.5e-15 Score=122.55 Aligned_cols=130 Identities=22% Similarity=0.317 Sum_probs=97.5
Q ss_pred ccHHHHHHHHHhccCCCCCCeEEEecCCCCHHHHHHHHhCC--EEEEEcCCCcHHHHHHHHHHHHHcCCc-eEEEEeecC
Q 026274 53 PCSVILAEYVWQQRYRFSGANVVELGAGTSLPGLVAAKVGS--NVTLTDDSNRIEVLKNMRRVCEMNKLN-CRVMGLTWG 129 (241)
Q Consensus 53 ~~s~~L~~~l~~~~~~~~~~~VLElGcGtGl~sl~la~~g~--~V~~tD~~~~~~~l~~~~~n~~~n~~~-~~~~~l~w~ 129 (241)
+++.+|++++... ++.+|||+|||+|.+|+.+++.+. +|+++|+++ .+++.+++|++.|+.. +++...|+.
T Consensus 18 ~~t~lL~~~l~~~----~~~~vLDlG~G~G~i~~~la~~~~~~~v~~vDi~~--~a~~~a~~n~~~n~~~~v~~~~~d~~ 91 (170)
T PF05175_consen 18 AGTRLLLDNLPKH----KGGRVLDLGCGSGVISLALAKRGPDAKVTAVDINP--DALELAKRNAERNGLENVEVVQSDLF 91 (170)
T ss_dssp HHHHHHHHHHHHH----TTCEEEEETSTTSHHHHHHHHTSTCEEEEEEESBH--HHHHHHHHHHHHTTCTTEEEEESSTT
T ss_pred HHHHHHHHHHhhc----cCCeEEEecCChHHHHHHHHHhCCCCEEEEEcCCH--HHHHHHHHHHHhcCcccccccccccc
Confidence 5777888888765 667899999999999999999876 599999995 7999999999999987 666665554
Q ss_pred CCCcCcCCCCCcEEEEcCCcCCCc-----cHHHHHHHHHHHhhcCCCeEEEEEeeccCchhHHHHHHHHcC
Q 026274 130 FLDASIFDLNPNIILGADVFYDAS-----AFDDLFATITYLLQSSPGSVFITTYHNRSGHHLIEFLMVKWG 195 (241)
Q Consensus 130 ~~~~~~~~~~fDlIl~~dvly~~~-----~~~~ll~~~~~lL~~~~~~~~~~~~~~r~~~~~~~~~~~~~g 195 (241)
+ ...+.+||+|+++.+++.-. ....+++...++|+ ++|.+++.+....... ..+.+.+|
T Consensus 92 ~---~~~~~~fD~Iv~NPP~~~~~~~~~~~~~~~i~~a~~~Lk--~~G~l~lv~~~~~~~~--~~l~~~f~ 155 (170)
T PF05175_consen 92 E---ALPDGKFDLIVSNPPFHAGGDDGLDLLRDFIEQARRYLK--PGGRLFLVINSHLGYE--RLLKELFG 155 (170)
T ss_dssp T---TCCTTCEEEEEE---SBTTSHCHHHHHHHHHHHHHHHEE--EEEEEEEEEETTSCHH--HHHHHHHS
T ss_pred c---cccccceeEEEEccchhcccccchhhHHHHHHHHHHhcc--CCCEEEEEeecCCChH--HHHHHhcC
Confidence 4 33357999999999977654 37889999999998 6676665554433322 22445555
|
; GO: 0008168 methyltransferase activity; PDB: 1WY7_A 1DUS_A 2OZV_A 2PJD_A 1VQ1_A 1NV9_A 1SG9_C 1NV8_A 3Q87_B 3DMF_A .... |
| >TIGR00537 hemK_rel_arch HemK-related putative methylase | Back alignment and domain information |
|---|
Probab=99.67 E-value=4e-15 Score=120.86 Aligned_cols=137 Identities=17% Similarity=0.179 Sum_probs=104.0
Q ss_pred HHHHHHHHHhccCCCCCCeEEEecCCCCHHHHHHHHhCCEEEEEcCCCcHHHHHHHHHHHHHcCCceEEEEeecCCCCcC
Q 026274 55 SVILAEYVWQQRYRFSGANVVELGAGTSLPGLVAAKVGSNVTLTDDSNRIEVLKNMRRVCEMNKLNCRVMGLTWGFLDAS 134 (241)
Q Consensus 55 s~~L~~~l~~~~~~~~~~~VLElGcGtGl~sl~la~~g~~V~~tD~~~~~~~l~~~~~n~~~n~~~~~~~~l~w~~~~~~ 134 (241)
+..|..++. ..++.+|||+|||+|.+++.+++.+.+|+++|+++ ++++.+++|+..++.++++...++.+.
T Consensus 8 ~~~l~~~l~----~~~~~~vLdlG~G~G~~~~~l~~~~~~v~~vD~s~--~~~~~a~~~~~~~~~~~~~~~~d~~~~--- 78 (179)
T TIGR00537 8 SLLLEANLR----ELKPDDVLEIGAGTGLVAIRLKGKGKCILTTDINP--FAVKELRENAKLNNVGLDVVMTDLFKG--- 78 (179)
T ss_pred HHHHHHHHH----hcCCCeEEEeCCChhHHHHHHHhcCCEEEEEECCH--HHHHHHHHHHHHcCCceEEEEcccccc---
Confidence 455555553 34557899999999999999999988999999995 799999999999988877777776543
Q ss_pred cCCCCCcEEEEcCCcCCCcc---------------------HHHHHHHHHHHhhcCCCeEEEEEeeccCchhHHHHHHHH
Q 026274 135 IFDLNPNIILGADVFYDASA---------------------FDDLFATITYLLQSSPGSVFITTYHNRSGHHLIEFLMVK 193 (241)
Q Consensus 135 ~~~~~fDlIl~~dvly~~~~---------------------~~~ll~~~~~lL~~~~~~~~~~~~~~r~~~~~~~~~~~~ 193 (241)
...+||+|+++.++++... ...+++.+.++|+ +||.+++.............++++
T Consensus 79 -~~~~fD~Vi~n~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~Lk--~gG~~~~~~~~~~~~~~~~~~l~~ 155 (179)
T TIGR00537 79 -VRGKFDVILFNPPYLPLEDDLRRGDWLDVAIDGGKDGRKVIDRFLDELPEILK--EGGRVQLIQSSLNGEPDTFDKLDE 155 (179)
T ss_pred -cCCcccEEEECCCCCCCcchhcccchhhhhhhcCCchHHHHHHHHHhHHHhhC--CCCEEEEEEeccCChHHHHHHHHh
Confidence 2348999999988765432 4678899999998 556665555444444455666788
Q ss_pred cCCEEEEEec
Q 026274 194 WGLKCVKLVD 203 (241)
Q Consensus 194 ~g~~~~~i~~ 203 (241)
.||+.+.+..
T Consensus 156 ~gf~~~~~~~ 165 (179)
T TIGR00537 156 RGFRYEIVAE 165 (179)
T ss_pred CCCeEEEEEE
Confidence 9999988843
|
The gene hemK from E. coli was found to contribute to heme biosynthesis and originally suggested to be protoporphyrinogen oxidase (Medline 95189105). Functional analysis of the nearest homolog in Saccharomyces cerevisiae, YNL063w, finds it is not protoporphyrinogen oxidase and sequence analysis suggests that HemK homologs have S-adenosyl-methionine-dependent methyltransferase activity (Medline 99237242). Homologs are found, usually in a single copy, in nearly all completed genomes, but varying somewhat in apparent domain architecture. This model represents an archaeal and eukaryotic protein family that lacks an N-terminal domain found in HemK and its eubacterial homologs. It is found in a single copy in the first six completed archaeal and eukaryotic genomes. |
| >PLN02396 hexaprenyldihydroxybenzoate methyltransferase | Back alignment and domain information |
|---|
Probab=99.65 E-value=5.8e-15 Score=130.30 Aligned_cols=137 Identities=17% Similarity=0.250 Sum_probs=102.4
Q ss_pred CCCCeEEEecCCCCHHHHHHHHhCCEEEEEcCCCcHHHHHHHHHHHHHcCC--ceEEEEeecCCCCcCcCCCCCcEEEEc
Q 026274 69 FSGANVVELGAGTSLPGLVAAKVGSNVTLTDDSNRIEVLKNMRRVCEMNKL--NCRVMGLTWGFLDASIFDLNPNIILGA 146 (241)
Q Consensus 69 ~~~~~VLElGcGtGl~sl~la~~g~~V~~tD~~~~~~~l~~~~~n~~~n~~--~~~~~~l~w~~~~~~~~~~~fDlIl~~ 146 (241)
.++.+|||+|||+|.++..+++.|++|+++|.++ ++++.+++++..++. ++.+...+..+. +..+++||+|++.
T Consensus 130 ~~g~~ILDIGCG~G~~s~~La~~g~~V~GID~s~--~~i~~Ar~~~~~~~~~~~i~~~~~dae~l--~~~~~~FD~Vi~~ 205 (322)
T PLN02396 130 FEGLKFIDIGCGGGLLSEPLARMGATVTGVDAVD--KNVKIARLHADMDPVTSTIEYLCTTAEKL--ADEGRKFDAVLSL 205 (322)
T ss_pred CCCCEEEEeeCCCCHHHHHHHHcCCEEEEEeCCH--HHHHHHHHHHHhcCcccceeEEecCHHHh--hhccCCCCEEEEh
Confidence 4677999999999999999999999999999995 799999988776543 455555544332 2234689999999
Q ss_pred CCcCCCccHHHHHHHHHHHhhcCCCeEEEEEeeccC-----------------------------chhHHHHHHHHcCCE
Q 026274 147 DVFYDASAFDDLFATITYLLQSSPGSVFITTYHNRS-----------------------------GHHLIEFLMVKWGLK 197 (241)
Q Consensus 147 dvly~~~~~~~ll~~~~~lL~~~~~~~~~~~~~~r~-----------------------------~~~~~~~~~~~~g~~ 197 (241)
++++|..+...+++.+.++|+ |||.+++....+. ....+..++++.||+
T Consensus 206 ~vLeHv~d~~~~L~~l~r~Lk--PGG~liist~nr~~~~~~~~i~~~eyi~~~lp~gth~~~~f~tp~eL~~lL~~aGf~ 283 (322)
T PLN02396 206 EVIEHVANPAEFCKSLSALTI--PNGATVLSTINRTMRAYASTIVGAEYILRWLPKGTHQWSSFVTPEELSMILQRASVD 283 (322)
T ss_pred hHHHhcCCHHHHHHHHHHHcC--CCcEEEEEECCcCHHHHHHhhhhHHHHHhcCCCCCcCccCCCCHHHHHHHHHHcCCe
Confidence 999999999999999999998 6666665532221 223455567889999
Q ss_pred EEEEecCCCCCCccc
Q 026274 198 CVKLVDGFSFLPHYK 212 (241)
Q Consensus 198 ~~~i~~~~~~~p~~~ 212 (241)
+..+.. +.+.|...
T Consensus 284 i~~~~G-~~~~p~~~ 297 (322)
T PLN02396 284 VKEMAG-FVYNPITG 297 (322)
T ss_pred EEEEee-eEEcCcCC
Confidence 988722 33344443
|
|
| >PRK00107 gidB 16S rRNA methyltransferase GidB; Reviewed | Back alignment and domain information |
|---|
Probab=99.59 E-value=2e-13 Score=111.87 Aligned_cols=139 Identities=22% Similarity=0.291 Sum_probs=103.5
Q ss_pred CCCeEEEecCCCCHHHHHHHHh--CCEEEEEcCCCcHHHHHHHHHHHHHcCCc-eEEEEeecCCCCcCcCCCCCcEEEEc
Q 026274 70 SGANVVELGAGTSLPGLVAAKV--GSNVTLTDDSNRIEVLKNMRRVCEMNKLN-CRVMGLTWGFLDASIFDLNPNIILGA 146 (241)
Q Consensus 70 ~~~~VLElGcGtGl~sl~la~~--g~~V~~tD~~~~~~~l~~~~~n~~~n~~~-~~~~~l~w~~~~~~~~~~~fDlIl~~ 146 (241)
++.+|||+|||+|..++.+++. +++|+++|.++ +|++.+++|++.++.+ +++...+..+.. . ..+||+|++.
T Consensus 45 ~g~~VLDiGcGtG~~al~la~~~~~~~V~giD~s~--~~l~~A~~~~~~~~l~~i~~~~~d~~~~~--~-~~~fDlV~~~ 119 (187)
T PRK00107 45 GGERVLDVGSGAGFPGIPLAIARPELKVTLVDSLG--KKIAFLREVAAELGLKNVTVVHGRAEEFG--Q-EEKFDVVTSR 119 (187)
T ss_pred CCCeEEEEcCCCCHHHHHHHHHCCCCeEEEEeCcH--HHHHHHHHHHHHcCCCCEEEEeccHhhCC--C-CCCccEEEEc
Confidence 3789999999999999999874 46999999996 6999999999998874 777777665532 1 4589999986
Q ss_pred CCcCCCccHHHHHHHHHHHhhcCCCeEEEEEeeccCchhHHHHHHHHcCCEEEEEecCCCCCCcccccccCCCeEEEEEE
Q 026274 147 DVFYDASAFDDLFATITYLLQSSPGSVFITTYHNRSGHHLIEFLMVKWGLKCVKLVDGFSFLPHYKARELNGNIQLAEIV 226 (241)
Q Consensus 147 dvly~~~~~~~ll~~~~~lL~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~i~~~~~~~p~~~~~~~~~~~~l~~i~ 226 (241)
. ...++.+++.+.++|+ +||.+++.... .....+..+.++.|+.+..... +. -.++.+..++..|+
T Consensus 120 ~----~~~~~~~l~~~~~~Lk--pGG~lv~~~~~-~~~~~l~~~~~~~~~~~~~~~~-~~------~~~~~~~~~~~~~~ 185 (187)
T PRK00107 120 A----VASLSDLVELCLPLLK--PGGRFLALKGR-DPEEEIAELPKALGGKVEEVIE-LT------LPGLDGERHLVIIR 185 (187)
T ss_pred c----ccCHHHHHHHHHHhcC--CCeEEEEEeCC-ChHHHHHHHHHhcCceEeeeEE-Ee------cCCCCCcEEEEEEe
Confidence 4 3567899999999998 66666655433 3344556677888999887733 11 23566677777665
Q ss_pred e
Q 026274 227 L 227 (241)
Q Consensus 227 ~ 227 (241)
+
T Consensus 186 ~ 186 (187)
T PRK00107 186 K 186 (187)
T ss_pred c
Confidence 4
|
|
| >PRK11036 putative S-adenosyl-L-methionine-dependent methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.59 E-value=3.9e-14 Score=121.41 Aligned_cols=104 Identities=18% Similarity=0.273 Sum_probs=85.8
Q ss_pred CCCeEEEecCCCCHHHHHHHHhCCEEEEEcCCCcHHHHHHHHHHHHHcCC--ceEEEEeecCCCCcCcCCCCCcEEEEcC
Q 026274 70 SGANVVELGAGTSLPGLVAAKVGSNVTLTDDSNRIEVLKNMRRVCEMNKL--NCRVMGLTWGFLDASIFDLNPNIILGAD 147 (241)
Q Consensus 70 ~~~~VLElGcGtGl~sl~la~~g~~V~~tD~~~~~~~l~~~~~n~~~n~~--~~~~~~l~w~~~~~~~~~~~fDlIl~~d 147 (241)
++.+|||+|||+|..+..+++.|.+|+++|+++ +|++.+++++...+. ++++...+..+.. +..+.+||+|++..
T Consensus 44 ~~~~vLDiGcG~G~~a~~la~~g~~v~~vD~s~--~~l~~a~~~~~~~g~~~~v~~~~~d~~~l~-~~~~~~fD~V~~~~ 120 (255)
T PRK11036 44 RPLRVLDAGGGEGQTAIKLAELGHQVILCDLSA--EMIQRAKQAAEAKGVSDNMQFIHCAAQDIA-QHLETPVDLILFHA 120 (255)
T ss_pred CCCEEEEeCCCchHHHHHHHHcCCEEEEEECCH--HHHHHHHHHHHhcCCccceEEEEcCHHHHh-hhcCCCCCEEEehh
Confidence 467999999999999999999999999999995 799999999887765 4566665654432 22346899999999
Q ss_pred CcCCCccHHHHHHHHHHHhhcCCCeEEEEEe
Q 026274 148 VFYDASAFDDLFATITYLLQSSPGSVFITTY 178 (241)
Q Consensus 148 vly~~~~~~~ll~~~~~lL~~~~~~~~~~~~ 178 (241)
++++..+...+++.+.++|+ |||.+++.+
T Consensus 121 vl~~~~~~~~~l~~~~~~Lk--pgG~l~i~~ 149 (255)
T PRK11036 121 VLEWVADPKSVLQTLWSVLR--PGGALSLMF 149 (255)
T ss_pred HHHhhCCHHHHHHHHHHHcC--CCeEEEEEE
Confidence 99999999999999999998 667665543
|
|
| >PRK00517 prmA ribosomal protein L11 methyltransferase; Reviewed | Back alignment and domain information |
|---|
Probab=99.59 E-value=9.5e-14 Score=118.77 Aligned_cols=150 Identities=21% Similarity=0.306 Sum_probs=111.3
Q ss_pred CceEEEEeccCcCCcceEEeccHHHHHHHHHhccCCCCCCeEEEecCCCCHHHHHHHHhCC-EEEEEcCCCcHHHHHHHH
Q 026274 33 PSFSIAIIENMKEEYGLFVWPCSVILAEYVWQQRYRFSGANVVELGAGTSLPGLVAAKVGS-NVTLTDDSNRIEVLKNMR 111 (241)
Q Consensus 33 ~~~~i~i~~~~~~~~g~~~W~~s~~L~~~l~~~~~~~~~~~VLElGcGtGl~sl~la~~g~-~V~~tD~~~~~~~l~~~~ 111 (241)
....|.+.+.+..++|. .+.+..+.+++... ..++++|||+|||+|.+++.+++.|+ +|+++|+++ .+++.++
T Consensus 86 ~~~~i~i~p~~afgtg~--h~tt~~~l~~l~~~--~~~~~~VLDiGcGsG~l~i~~~~~g~~~v~giDis~--~~l~~A~ 159 (250)
T PRK00517 86 DEINIELDPGMAFGTGT--HPTTRLCLEALEKL--VLPGKTVLDVGCGSGILAIAAAKLGAKKVLAVDIDP--QAVEAAR 159 (250)
T ss_pred CeEEEEECCCCccCCCC--CHHHHHHHHHHHhh--cCCCCEEEEeCCcHHHHHHHHHHcCCCeEEEEECCH--HHHHHHH
Confidence 44667777777667776 58888888888754 34678999999999999999999888 599999995 6999999
Q ss_pred HHHHHcCCceEEEEeecCCCCcCcCCCCCcEEEEcCCcCCCccHHHHHHHHHHHhhcCCCeEEEEEeeccCchhHHHHHH
Q 026274 112 RVCEMNKLNCRVMGLTWGFLDASIFDLNPNIILGADVFYDASAFDDLFATITYLLQSSPGSVFITTYHNRSGHHLIEFLM 191 (241)
Q Consensus 112 ~n~~~n~~~~~~~~l~w~~~~~~~~~~~fDlIl~~dvly~~~~~~~ll~~~~~lL~~~~~~~~~~~~~~r~~~~~~~~~~ 191 (241)
+|+..|++...+. +.-+ +.+||+|+++-. ...+..+++.+.++|+ +||.++++.........+...+
T Consensus 160 ~n~~~~~~~~~~~-~~~~-------~~~fD~Vvani~---~~~~~~l~~~~~~~Lk--pgG~lilsgi~~~~~~~v~~~l 226 (250)
T PRK00517 160 ENAELNGVELNVY-LPQG-------DLKADVIVANIL---ANPLLELAPDLARLLK--PGGRLILSGILEEQADEVLEAY 226 (250)
T ss_pred HHHHHcCCCceEE-EccC-------CCCcCEEEEcCc---HHHHHHHHHHHHHhcC--CCcEEEEEECcHhhHHHHHHHH
Confidence 9999998742221 1111 127999998622 3346778889999998 6777777654444444555667
Q ss_pred HHcCCEEEEE
Q 026274 192 VKWGLKCVKL 201 (241)
Q Consensus 192 ~~~g~~~~~i 201 (241)
++.||.....
T Consensus 227 ~~~Gf~~~~~ 236 (250)
T PRK00517 227 EEAGFTLDEV 236 (250)
T ss_pred HHCCCEEEEE
Confidence 8899998776
|
|
| >PF12847 Methyltransf_18: Methyltransferase domain; PDB: 3G2Q_A 3G2O_A 3G2M_B 3G2P_B 3D2L_B 1IM8_B 3NJR_A 3E05_H 3EVZ_A 3HM2_A | Back alignment and domain information |
|---|
Probab=99.59 E-value=1.1e-14 Score=108.63 Aligned_cols=103 Identities=19% Similarity=0.209 Sum_probs=80.9
Q ss_pred CCCeEEEecCCCCHHHHHHHH--hCCEEEEEcCCCcHHHHHHHHHHHHHcC--CceEEEEeecCCCCcCcCCCCCcEEEE
Q 026274 70 SGANVVELGAGTSLPGLVAAK--VGSNVTLTDDSNRIEVLKNMRRVCEMNK--LNCRVMGLTWGFLDASIFDLNPNIILG 145 (241)
Q Consensus 70 ~~~~VLElGcGtGl~sl~la~--~g~~V~~tD~~~~~~~l~~~~~n~~~n~--~~~~~~~l~w~~~~~~~~~~~fDlIl~ 145 (241)
++.+|||||||+|..++.+++ .+++|+++|+++ ++++.+++++...+ .++++...++ .. ......+||+|++
T Consensus 1 p~~~vLDlGcG~G~~~~~l~~~~~~~~v~gvD~s~--~~~~~a~~~~~~~~~~~~i~~~~~d~-~~-~~~~~~~~D~v~~ 76 (112)
T PF12847_consen 1 PGGRVLDLGCGTGRLSIALARLFPGARVVGVDISP--EMLEIARERAAEEGLSDRITFVQGDA-EF-DPDFLEPFDLVIC 76 (112)
T ss_dssp TTCEEEEETTTTSHHHHHHHHHHTTSEEEEEESSH--HHHHHHHHHHHHTTTTTTEEEEESCC-HG-GTTTSSCEEEEEE
T ss_pred CCCEEEEEcCcCCHHHHHHHhcCCCCEEEEEeCCH--HHHHHHHHHHHhcCCCCCeEEEECcc-cc-CcccCCCCCEEEE
Confidence 468999999999999999999 688999999995 79999999995544 4678888777 21 2223457999999
Q ss_pred cC-CcCC---CccHHHHHHHHHHHhhcCCCeEEEEEe
Q 026274 146 AD-VFYD---ASAFDDLFATITYLLQSSPGSVFITTY 178 (241)
Q Consensus 146 ~d-vly~---~~~~~~ll~~~~~lL~~~~~~~~~~~~ 178 (241)
.. +..+ .+....+++.+.++|+ |||.+++..
T Consensus 77 ~~~~~~~~~~~~~~~~~l~~~~~~L~--pgG~lvi~~ 111 (112)
T PF12847_consen 77 SGFTLHFLLPLDERRRVLERIRRLLK--PGGRLVINT 111 (112)
T ss_dssp CSGSGGGCCHHHHHHHHHHHHHHHEE--EEEEEEEEE
T ss_pred CCCccccccchhHHHHHHHHHHHhcC--CCcEEEEEE
Confidence 98 4332 2456888999999998 678877764
|
... |
| >KOG1270 consensus Methyltransferases [Coenzyme transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.58 E-value=3.6e-15 Score=125.31 Aligned_cols=108 Identities=18% Similarity=0.249 Sum_probs=80.4
Q ss_pred CCCeEEEecCCCCHHHHHHHHhCCEEEEEcCCCcHHHHHHHHHHHHHcCCceE--EEEeecCCCCcCcCCCCCcEEEEcC
Q 026274 70 SGANVVELGAGTSLPGLVAAKVGSNVTLTDDSNRIEVLKNMRRVCEMNKLNCR--VMGLTWGFLDASIFDLNPNIILGAD 147 (241)
Q Consensus 70 ~~~~VLElGcGtGl~sl~la~~g~~V~~tD~~~~~~~l~~~~~n~~~n~~~~~--~~~l~w~~~~~~~~~~~fDlIl~~d 147 (241)
.|++|||+|||+|++|.-||+.|++|+++|.++ +|++.+++....+-.... .+.+...+...+...++||.|++++
T Consensus 89 ~g~~ilDvGCGgGLLSepLArlga~V~GID~s~--~~V~vA~~h~~~dP~~~~~~~y~l~~~~~~~E~~~~~fDaVvcse 166 (282)
T KOG1270|consen 89 LGMKILDVGCGGGLLSEPLARLGAQVTGIDASD--DMVEVANEHKKMDPVLEGAIAYRLEYEDTDVEGLTGKFDAVVCSE 166 (282)
T ss_pred CCceEEEeccCccccchhhHhhCCeeEeecccH--HHHHHHHHhhhcCchhccccceeeehhhcchhhcccccceeeeHH
Confidence 468899999999999999999999999999995 699999887443322111 1122222222233345799999999
Q ss_pred CcCCCccHHHHHHHHHHHhhcCCCeEEEEEeecc
Q 026274 148 VFYDASAFDDLFATITYLLQSSPGSVFITTYHNR 181 (241)
Q Consensus 148 vly~~~~~~~ll~~~~~lL~~~~~~~~~~~~~~r 181 (241)
++.|..+++.+++.+.++|+| +|.++++.-.|
T Consensus 167 vleHV~dp~~~l~~l~~~lkP--~G~lfittinr 198 (282)
T KOG1270|consen 167 VLEHVKDPQEFLNCLSALLKP--NGRLFITTINR 198 (282)
T ss_pred HHHHHhCHHHHHHHHHHHhCC--CCceEeeehhh
Confidence 999999999999999999994 45555543343
|
|
| >TIGR00406 prmA ribosomal protein L11 methyltransferase | Back alignment and domain information |
|---|
Probab=99.58 E-value=1.1e-13 Score=120.73 Aligned_cols=155 Identities=17% Similarity=0.272 Sum_probs=108.2
Q ss_pred CceEEEEeccCcCCcceEEeccHHHHHHHHHhccCCCCCCeEEEecCCCCHHHHHHHHhCC-EEEEEcCCCcHHHHHHHH
Q 026274 33 PSFSIAIIENMKEEYGLFVWPCSVILAEYVWQQRYRFSGANVVELGAGTSLPGLVAAKVGS-NVTLTDDSNRIEVLKNMR 111 (241)
Q Consensus 33 ~~~~i~i~~~~~~~~g~~~W~~s~~L~~~l~~~~~~~~~~~VLElGcGtGl~sl~la~~g~-~V~~tD~~~~~~~l~~~~ 111 (241)
....|.+...+..++|.+ +.+.+..+++.... .++++|||+|||+|.+++.+++.|+ +|+++|+++ .+++.++
T Consensus 126 ~~~~i~ldpg~aFgtG~h--~tt~l~l~~l~~~~--~~g~~VLDvGcGsG~lai~aa~~g~~~V~avDid~--~al~~a~ 199 (288)
T TIGR00406 126 DALIIMLDPGLAFGTGTH--PTTSLCLEWLEDLD--LKDKNVIDVGCGSGILSIAALKLGAAKVVGIDIDP--LAVESAR 199 (288)
T ss_pred CcEEEEECCCCcccCCCC--HHHHHHHHHHHhhc--CCCCEEEEeCCChhHHHHHHHHcCCCeEEEEECCH--HHHHHHH
Confidence 456677777766666655 88888778776542 3678999999999999999999887 899999995 6999999
Q ss_pred HHHHHcCCceEEEEeecCCCCcCcCCCCCcEEEEcCCcCCCccHHHHHHHHHHHhhcCCCeEEEEEeeccCchhHHHHHH
Q 026274 112 RVCEMNKLNCRVMGLTWGFLDASIFDLNPNIILGADVFYDASAFDDLFATITYLLQSSPGSVFITTYHNRSGHHLIEFLM 191 (241)
Q Consensus 112 ~n~~~n~~~~~~~~l~w~~~~~~~~~~~fDlIl~~dvly~~~~~~~ll~~~~~lL~~~~~~~~~~~~~~r~~~~~~~~~~ 191 (241)
+|+..|+....+... ..+. ......+||+|+++-. ...+..++..+.++|+ |||.++++.-.+.....+...+
T Consensus 200 ~n~~~n~~~~~~~~~-~~~~-~~~~~~~fDlVvan~~---~~~l~~ll~~~~~~Lk--pgG~li~sgi~~~~~~~v~~~~ 272 (288)
T TIGR00406 200 KNAELNQVSDRLQVK-LIYL-EQPIEGKADVIVANIL---AEVIKELYPQFSRLVK--PGGWLILSGILETQAQSVCDAY 272 (288)
T ss_pred HHHHHcCCCcceEEE-eccc-ccccCCCceEEEEecC---HHHHHHHHHHHHHHcC--CCcEEEEEeCcHhHHHHHHHHH
Confidence 999999875332211 1111 1223458999998633 3355678899999998 5676666544433333344444
Q ss_pred HHcCCEEEEE
Q 026274 192 VKWGLKCVKL 201 (241)
Q Consensus 192 ~~~g~~~~~i 201 (241)
++. |+....
T Consensus 273 ~~~-f~~~~~ 281 (288)
T TIGR00406 273 EQG-FTVVEI 281 (288)
T ss_pred Hcc-CceeeE
Confidence 444 776655
|
Ribosomal protein L11 methyltransferase is an S-adenosyl-L-methionine-dependent methyltransferase required for the modification of ribosomal protein L11. This protein is found in bacteria and (with a probable transit peptide) in Arabidopsis. |
| >PF13847 Methyltransf_31: Methyltransferase domain; PDB: 3T0I_B 3SVZ_B 3SXJ_A 3F4K_A 3GU3_B 2GH1_A 1R8Y_E 1R8X_B 2B3T_A 1T43_A | Back alignment and domain information |
|---|
Probab=99.58 E-value=2.8e-14 Score=112.84 Aligned_cols=106 Identities=23% Similarity=0.314 Sum_probs=88.4
Q ss_pred CCCeEEEecCCCCHHHHHHHH-h--CCEEEEEcCCCcHHHHHHHHHHHHHcCC-ceEEEEeecCCCCcCcCCCCCcEEEE
Q 026274 70 SGANVVELGAGTSLPGLVAAK-V--GSNVTLTDDSNRIEVLKNMRRVCEMNKL-NCRVMGLTWGFLDASIFDLNPNIILG 145 (241)
Q Consensus 70 ~~~~VLElGcGtGl~sl~la~-~--g~~V~~tD~~~~~~~l~~~~~n~~~n~~-~~~~~~l~w~~~~~~~~~~~fDlIl~ 145 (241)
++.+|||+|||+|..+..+++ . +++++++|+++ +|++.++.+++.++. ++++...|+.+.... ...+||+|++
T Consensus 3 ~~~~iLDlGcG~G~~~~~l~~~~~~~~~i~gvD~s~--~~i~~a~~~~~~~~~~ni~~~~~d~~~l~~~-~~~~~D~I~~ 79 (152)
T PF13847_consen 3 SNKKILDLGCGTGRLLIQLAKELNPGAKIIGVDISE--EMIEYAKKRAKELGLDNIEFIQGDIEDLPQE-LEEKFDIIIS 79 (152)
T ss_dssp TTSEEEEET-TTSHHHHHHHHHSTTTSEEEEEESSH--HHHHHHHHHHHHTTSTTEEEEESBTTCGCGC-SSTTEEEEEE
T ss_pred CCCEEEEecCcCcHHHHHHHHhcCCCCEEEEEECcH--HHHHHhhcccccccccccceEEeehhccccc-cCCCeeEEEE
Confidence 567999999999999999994 4 56999999995 799999999988877 589999888874322 2368999999
Q ss_pred cCCcCCCccHHHHHHHHHHHhhcCCCeEEEEEeec
Q 026274 146 ADVFYDASAFDDLFATITYLLQSSPGSVFITTYHN 180 (241)
Q Consensus 146 ~dvly~~~~~~~ll~~~~~lL~~~~~~~~~~~~~~ 180 (241)
+.++++..+...+++.+.++|+ ++|.+++....
T Consensus 80 ~~~l~~~~~~~~~l~~~~~~lk--~~G~~i~~~~~ 112 (152)
T PF13847_consen 80 NGVLHHFPDPEKVLKNIIRLLK--PGGILIISDPN 112 (152)
T ss_dssp ESTGGGTSHHHHHHHHHHHHEE--EEEEEEEEEEE
T ss_pred cCchhhccCHHHHHHHHHHHcC--CCcEEEEEECC
Confidence 9999999999999999999998 56766666544
|
... |
| >PRK14968 putative methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.58 E-value=2.5e-13 Score=110.37 Aligned_cols=141 Identities=19% Similarity=0.216 Sum_probs=103.6
Q ss_pred EEeccHHHHHHHHHhccCCCCCCeEEEecCCCCHHHHHHHHhCCEEEEEcCCCcHHHHHHHHHHHHHcCCc---eEEEEe
Q 026274 50 FVWPCSVILAEYVWQQRYRFSGANVVELGAGTSLPGLVAAKVGSNVTLTDDSNRIEVLKNMRRVCEMNKLN---CRVMGL 126 (241)
Q Consensus 50 ~~W~~s~~L~~~l~~~~~~~~~~~VLElGcGtGl~sl~la~~g~~V~~tD~~~~~~~l~~~~~n~~~n~~~---~~~~~l 126 (241)
..|+.+.++.+++.. .++++|||+|||+|..+..+++.+++|+++|+++ ++++.+++|+..++.. +.+...
T Consensus 7 ~p~~~~~~l~~~~~~----~~~~~vLd~G~G~G~~~~~l~~~~~~v~~~D~s~--~~~~~a~~~~~~~~~~~~~~~~~~~ 80 (188)
T PRK14968 7 EPAEDSFLLAENAVD----KKGDRVLEVGTGSGIVAIVAAKNGKKVVGVDINP--YAVECAKCNAKLNNIRNNGVEVIRS 80 (188)
T ss_pred CcchhHHHHHHhhhc----cCCCEEEEEccccCHHHHHHHhhcceEEEEECCH--HHHHHHHHHHHHcCCCCcceEEEec
Confidence 346777888887753 4677999999999999999999988999999995 6999999999888764 666666
Q ss_pred ecCCCCcCcCCCCCcEEEEcCCcCCC---------------------ccHHHHHHHHHHHhhcCCCeEEEEEeeccCchh
Q 026274 127 TWGFLDASIFDLNPNIILGADVFYDA---------------------SAFDDLFATITYLLQSSPGSVFITTYHNRSGHH 185 (241)
Q Consensus 127 ~w~~~~~~~~~~~fDlIl~~dvly~~---------------------~~~~~ll~~~~~lL~~~~~~~~~~~~~~r~~~~ 185 (241)
|+.+. ..+.+||+|+++.+++.. ..+..+++.+.++|+ ++|.+++.........
T Consensus 81 d~~~~---~~~~~~d~vi~n~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~Lk--~gG~~~~~~~~~~~~~ 155 (188)
T PRK14968 81 DLFEP---FRGDKFDVILFNPPYLPTEEEEEWDDWLNYALSGGKDGREVIDRFLDEVGRYLK--PGGRILLLQSSLTGED 155 (188)
T ss_pred ccccc---ccccCceEEEECCCcCCCCchhhhhhhhhhhhccCcChHHHHHHHHHHHHHhcC--CCeEEEEEEcccCCHH
Confidence 65442 233479999998776542 124668899999998 4454444433333334
Q ss_pred HHHHHHHHcCCEEEEE
Q 026274 186 LIEFLMVKWGLKCVKL 201 (241)
Q Consensus 186 ~~~~~~~~~g~~~~~i 201 (241)
....++.+.||+...+
T Consensus 156 ~l~~~~~~~g~~~~~~ 171 (188)
T PRK14968 156 EVLEYLEKLGFEAEVV 171 (188)
T ss_pred HHHHHHHHCCCeeeee
Confidence 4566778899987765
|
|
| >PRK14967 putative methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.57 E-value=1.8e-13 Score=115.09 Aligned_cols=140 Identities=19% Similarity=0.229 Sum_probs=103.6
Q ss_pred cHHHHHHHHHhccCCCCCCeEEEecCCCCHHHHHHHHhCC-EEEEEcCCCcHHHHHHHHHHHHHcCCceEEEEeecCCCC
Q 026274 54 CSVILAEYVWQQRYRFSGANVVELGAGTSLPGLVAAKVGS-NVTLTDDSNRIEVLKNMRRVCEMNKLNCRVMGLTWGFLD 132 (241)
Q Consensus 54 ~s~~L~~~l~~~~~~~~~~~VLElGcGtGl~sl~la~~g~-~V~~tD~~~~~~~l~~~~~n~~~n~~~~~~~~l~w~~~~ 132 (241)
.+..+++++.... ..++.+|||+|||+|.+++.+++.++ +|+++|+++ ++++.+++|+..++.++.+...++.+.
T Consensus 21 ds~~l~~~l~~~~-~~~~~~vLDlGcG~G~~~~~la~~~~~~v~~vD~s~--~~l~~a~~n~~~~~~~~~~~~~d~~~~- 96 (223)
T PRK14967 21 DTQLLADALAAEG-LGPGRRVLDLCTGSGALAVAAAAAGAGSVTAVDISR--RAVRSARLNALLAGVDVDVRRGDWARA- 96 (223)
T ss_pred cHHHHHHHHHhcc-cCCCCeEEEecCCHHHHHHHHHHcCCCeEEEEECCH--HHHHHHHHHHHHhCCeeEEEECchhhh-
Confidence 5677888876532 34567999999999999999999877 999999995 699999999998888877777776543
Q ss_pred cCcCCCCCcEEEEcCCcCCCc---------------------cHHHHHHHHHHHhhcCCCeEEEEEeeccCchhHHHHHH
Q 026274 133 ASIFDLNPNIILGADVFYDAS---------------------AFDDLFATITYLLQSSPGSVFITTYHNRSGHHLIEFLM 191 (241)
Q Consensus 133 ~~~~~~~fDlIl~~dvly~~~---------------------~~~~ll~~~~~lL~~~~~~~~~~~~~~r~~~~~~~~~~ 191 (241)
..+.+||+|+++.+++... .+..+++.+.++|+ +||.+++.+............+
T Consensus 97 --~~~~~fD~Vi~npPy~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~a~~~Lk--~gG~l~~~~~~~~~~~~~~~~l 172 (223)
T PRK14967 97 --VEFRPFDVVVSNPPYVPAPPDAPPSRGPARAWDAGPDGRAVLDRLCDAAPALLA--PGGSLLLVQSELSGVERTLTRL 172 (223)
T ss_pred --ccCCCeeEEEECCCCCCCCcccccccChhHhhhCCCcHHHHHHHHHHHHHHhcC--CCcEEEEEEecccCHHHHHHHH
Confidence 2345899999987644321 14567888899998 5666666554443333344456
Q ss_pred HHcCCEEEEE
Q 026274 192 VKWGLKCVKL 201 (241)
Q Consensus 192 ~~~g~~~~~i 201 (241)
++.||.+..+
T Consensus 173 ~~~g~~~~~~ 182 (223)
T PRK14967 173 SEAGLDAEVV 182 (223)
T ss_pred HHCCCCeEEE
Confidence 7789887776
|
|
| >TIGR00477 tehB tellurite resistance protein TehB | Back alignment and domain information |
|---|
Probab=99.56 E-value=6.3e-14 Score=115.58 Aligned_cols=101 Identities=16% Similarity=0.237 Sum_probs=81.2
Q ss_pred CCCCeEEEecCCCCHHHHHHHHhCCEEEEEcCCCcHHHHHHHHHHHHHcCCceEEEEeecCCCCcCcCCCCCcEEEEcCC
Q 026274 69 FSGANVVELGAGTSLPGLVAAKVGSNVTLTDDSNRIEVLKNMRRVCEMNKLNCRVMGLTWGFLDASIFDLNPNIILGADV 148 (241)
Q Consensus 69 ~~~~~VLElGcGtGl~sl~la~~g~~V~~tD~~~~~~~l~~~~~n~~~n~~~~~~~~l~w~~~~~~~~~~~fDlIl~~dv 148 (241)
.++.+|||+|||+|..++.+++.|.+|+++|+++ .|++.+++++..+++++.+...+.... + .+.+||+|+++.+
T Consensus 29 ~~~~~vLDiGcG~G~~a~~la~~g~~V~~iD~s~--~~l~~a~~~~~~~~~~v~~~~~d~~~~--~-~~~~fD~I~~~~~ 103 (195)
T TIGR00477 29 VAPCKTLDLGCGQGRNSLYLSLAGYDVRAWDHNP--ASIASVLDMKARENLPLRTDAYDINAA--A-LNEDYDFIFSTVV 103 (195)
T ss_pred CCCCcEEEeCCCCCHHHHHHHHCCCeEEEEECCH--HHHHHHHHHHHHhCCCceeEeccchhc--c-ccCCCCEEEEecc
Confidence 3567999999999999999999999999999995 699999999888887766655554332 1 2357999999999
Q ss_pred cCCC--ccHHHHHHHHHHHhhcCCCeE-EEE
Q 026274 149 FYDA--SAFDDLFATITYLLQSSPGSV-FIT 176 (241)
Q Consensus 149 ly~~--~~~~~ll~~~~~lL~~~~~~~-~~~ 176 (241)
+++. .....+++.+.++|+ |||. +++
T Consensus 104 ~~~~~~~~~~~~l~~~~~~Lk--pgG~lli~ 132 (195)
T TIGR00477 104 FMFLQAGRVPEIIANMQAHTR--PGGYNLIV 132 (195)
T ss_pred cccCCHHHHHHHHHHHHHHhC--CCcEEEEE
Confidence 8765 467899999999998 5554 444
|
Part of a tellurite-reducing operon tehA and tehB |
| >PLN02244 tocopherol O-methyltransferase | Back alignment and domain information |
|---|
Probab=99.55 E-value=5e-13 Score=119.25 Aligned_cols=102 Identities=13% Similarity=0.058 Sum_probs=84.7
Q ss_pred CCCCeEEEecCCCCHHHHHHHHh-CCEEEEEcCCCcHHHHHHHHHHHHHcCC--ceEEEEeecCCCCcCcCCCCCcEEEE
Q 026274 69 FSGANVVELGAGTSLPGLVAAKV-GSNVTLTDDSNRIEVLKNMRRVCEMNKL--NCRVMGLTWGFLDASIFDLNPNIILG 145 (241)
Q Consensus 69 ~~~~~VLElGcGtGl~sl~la~~-g~~V~~tD~~~~~~~l~~~~~n~~~n~~--~~~~~~l~w~~~~~~~~~~~fDlIl~ 145 (241)
.++.+|||+|||+|..+..+++. |++|+++|+++ .+++.+++++..++. ++++...|..+. +..+++||+|++
T Consensus 117 ~~~~~VLDiGCG~G~~~~~La~~~g~~v~gvD~s~--~~i~~a~~~~~~~g~~~~v~~~~~D~~~~--~~~~~~FD~V~s 192 (340)
T PLN02244 117 KRPKRIVDVGCGIGGSSRYLARKYGANVKGITLSP--VQAARANALAAAQGLSDKVSFQVADALNQ--PFEDGQFDLVWS 192 (340)
T ss_pred CCCCeEEEecCCCCHHHHHHHHhcCCEEEEEECCH--HHHHHHHHHHHhcCCCCceEEEEcCcccC--CCCCCCccEEEE
Confidence 46789999999999999999986 78999999995 699999999888775 467776666543 334568999999
Q ss_pred cCCcCCCccHHHHHHHHHHHhhcCCCeEEEE
Q 026274 146 ADVFYDASAFDDLFATITYLLQSSPGSVFIT 176 (241)
Q Consensus 146 ~dvly~~~~~~~ll~~~~~lL~~~~~~~~~~ 176 (241)
..+++|..+...+++.+.++|+ |||.+++
T Consensus 193 ~~~~~h~~d~~~~l~e~~rvLk--pGG~lvi 221 (340)
T PLN02244 193 MESGEHMPDKRKFVQELARVAA--PGGRIII 221 (340)
T ss_pred CCchhccCCHHHHHHHHHHHcC--CCcEEEE
Confidence 9999999999999999999998 5555444
|
|
| >PRK11207 tellurite resistance protein TehB; Provisional | Back alignment and domain information |
|---|
Probab=99.54 E-value=1.2e-13 Score=114.14 Aligned_cols=98 Identities=22% Similarity=0.294 Sum_probs=80.1
Q ss_pred CCCCeEEEecCCCCHHHHHHHHhCCEEEEEcCCCcHHHHHHHHHHHHHcCCc-eEEEEeecCCCCcCcCCCCCcEEEEcC
Q 026274 69 FSGANVVELGAGTSLPGLVAAKVGSNVTLTDDSNRIEVLKNMRRVCEMNKLN-CRVMGLTWGFLDASIFDLNPNIILGAD 147 (241)
Q Consensus 69 ~~~~~VLElGcGtGl~sl~la~~g~~V~~tD~~~~~~~l~~~~~n~~~n~~~-~~~~~l~w~~~~~~~~~~~fDlIl~~d 147 (241)
.++.+|||+|||+|..++.+|+.|++|+++|+|+ +|++.+++++..++.. +++...++.+.. .+.+||+|+++.
T Consensus 29 ~~~~~vLDiGcG~G~~a~~La~~g~~V~gvD~S~--~~i~~a~~~~~~~~~~~v~~~~~d~~~~~---~~~~fD~I~~~~ 103 (197)
T PRK11207 29 VKPGKTLDLGCGNGRNSLYLAANGFDVTAWDKNP--MSIANLERIKAAENLDNLHTAVVDLNNLT---FDGEYDFILSTV 103 (197)
T ss_pred CCCCcEEEECCCCCHHHHHHHHCCCEEEEEeCCH--HHHHHHHHHHHHcCCCcceEEecChhhCC---cCCCcCEEEEec
Confidence 4567999999999999999999999999999995 7999999998887764 566666654431 245799999999
Q ss_pred CcCCC--ccHHHHHHHHHHHhhcCCCeE
Q 026274 148 VFYDA--SAFDDLFATITYLLQSSPGSV 173 (241)
Q Consensus 148 vly~~--~~~~~ll~~~~~lL~~~~~~~ 173 (241)
++++. .....+++.+.++|+ |||.
T Consensus 104 ~~~~~~~~~~~~~l~~i~~~Lk--pgG~ 129 (197)
T PRK11207 104 VLMFLEAKTIPGLIANMQRCTK--PGGY 129 (197)
T ss_pred chhhCCHHHHHHHHHHHHHHcC--CCcE
Confidence 98764 367899999999998 4554
|
|
| >PRK15068 tRNA mo(5)U34 methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.54 E-value=4.4e-13 Score=118.68 Aligned_cols=146 Identities=18% Similarity=0.214 Sum_probs=102.1
Q ss_pred EEeccHHHHHHHHHhccCCCCCCeEEEecCCCCHHHHHHHHhCC-EEEEEcCCCcHHHHHHHHHHHHH--cCCceEEEEe
Q 026274 50 FVWPCSVILAEYVWQQRYRFSGANVVELGAGTSLPGLVAAKVGS-NVTLTDDSNRIEVLKNMRRVCEM--NKLNCRVMGL 126 (241)
Q Consensus 50 ~~W~~s~~L~~~l~~~~~~~~~~~VLElGcGtGl~sl~la~~g~-~V~~tD~~~~~~~l~~~~~n~~~--n~~~~~~~~l 126 (241)
..|++....... ..+....++++|||||||+|..+..++..|+ .|+++|.++ .++...+..... +..++.+...
T Consensus 103 ~ew~s~~k~~~l-~~~l~~l~g~~VLDIGCG~G~~~~~la~~g~~~V~GiD~S~--~~l~q~~a~~~~~~~~~~i~~~~~ 179 (322)
T PRK15068 103 TEWRSDWKWDRV-LPHLSPLKGRTVLDVGCGNGYHMWRMLGAGAKLVVGIDPSQ--LFLCQFEAVRKLLGNDQRAHLLPL 179 (322)
T ss_pred ceehHHhHHHHH-HHhhCCCCCCEEEEeccCCcHHHHHHHHcCCCEEEEEcCCH--HHHHHHHHHHHhcCCCCCeEEEeC
Confidence 458776664433 3333446789999999999999999999887 699999995 466544332222 2345677766
Q ss_pred ecCCCCcCcCCCCCcEEEEcCCcCCCccHHHHHHHHHHHhhcCCCeEEEEEee-------------ccC----------c
Q 026274 127 TWGFLDASIFDLNPNIILGADVFYDASAFDDLFATITYLLQSSPGSVFITTYH-------------NRS----------G 183 (241)
Q Consensus 127 ~w~~~~~~~~~~~fDlIl~~dvly~~~~~~~ll~~~~~lL~~~~~~~~~~~~~-------------~r~----------~ 183 (241)
+..+. +. +.+||+|++..++||..+...+++.+.+.|+ +||.+++..- .|+ +
T Consensus 180 d~e~l--p~-~~~FD~V~s~~vl~H~~dp~~~L~~l~~~Lk--pGG~lvl~~~~i~~~~~~~l~p~~~y~~~~~~~~lps 254 (322)
T PRK15068 180 GIEQL--PA-LKAFDTVFSMGVLYHRRSPLDHLKQLKDQLV--PGGELVLETLVIDGDENTVLVPGDRYAKMRNVYFIPS 254 (322)
T ss_pred CHHHC--CC-cCCcCEEEECChhhccCCHHHHHHHHHHhcC--CCcEEEEEEEEecCCCccccCchhHHhcCccceeCCC
Confidence 66544 22 5689999999999999999999999999998 5565554310 011 1
Q ss_pred hhHHHHHHHHcCCEEEEEec
Q 026274 184 HHLIEFLMVKWGLKCVKLVD 203 (241)
Q Consensus 184 ~~~~~~~~~~~g~~~~~i~~ 203 (241)
......++++.||....+.+
T Consensus 255 ~~~l~~~L~~aGF~~i~~~~ 274 (322)
T PRK15068 255 VPALKNWLERAGFKDVRIVD 274 (322)
T ss_pred HHHHHHHHHHcCCceEEEEe
Confidence 22345567899999888744
|
|
| >COG2263 Predicted RNA methylase [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=99.53 E-value=1.6e-12 Score=104.73 Aligned_cols=150 Identities=16% Similarity=0.144 Sum_probs=107.4
Q ss_pred ccCCCCCCeEEEecCCCCHHHHHHHHhCC-EEEEEcCCCcHHHHHHHHHHHHHcCCceEEEEeecCCCCcCcCCCCCcEE
Q 026274 65 QRYRFSGANVVELGAGTSLPGLVAAKVGS-NVTLTDDSNRIEVLKNMRRVCEMNKLNCRVMGLTWGFLDASIFDLNPNII 143 (241)
Q Consensus 65 ~~~~~~~~~VLElGcGtGl~sl~la~~g~-~V~~tD~~~~~~~l~~~~~n~~~n~~~~~~~~l~w~~~~~~~~~~~fDlI 143 (241)
......|+.|+|||||||.+|+.++.+|+ .|+++|+++ ++++.+++|+.....++.+...|..+. ..++|.+
T Consensus 40 ~~g~l~g~~V~DlG~GTG~La~ga~~lGa~~V~~vdiD~--~a~ei~r~N~~~l~g~v~f~~~dv~~~-----~~~~dtv 112 (198)
T COG2263 40 LRGDLEGKTVLDLGAGTGILAIGAALLGASRVLAVDIDP--EALEIARANAEELLGDVEFVVADVSDF-----RGKFDTV 112 (198)
T ss_pred HcCCcCCCEEEEcCCCcCHHHHHHHhcCCcEEEEEecCH--HHHHHHHHHHHhhCCceEEEEcchhhc-----CCccceE
Confidence 34667899999999999999999999998 899999995 799999999999877888877666543 4579999
Q ss_pred EEcCCcCC--CccHHHHHHHHHHHhhcCCCeEEEEEeeccCchhHHHHHHHHcCCEEEEE-ecCCCCCCcccccccCC--
Q 026274 144 LGADVFYD--ASAFDDLFATITYLLQSSPGSVFITTYHNRSGHHLIEFLMVKWGLKCVKL-VDGFSFLPHYKARELNG-- 218 (241)
Q Consensus 144 l~~dvly~--~~~~~~ll~~~~~lL~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~i-~~~~~~~p~~~~~~~~~-- 218 (241)
+.++++=- ...-.+++....++- -++.+.++..+....+.+.+..|+.+... ...|..++.+..+....
T Consensus 113 imNPPFG~~~rhaDr~Fl~~Ale~s------~vVYsiH~a~~~~f~~~~~~~~G~~v~~~~~~~~~iP~~y~fH~k~~~~ 186 (198)
T COG2263 113 IMNPPFGSQRRHADRPFLLKALEIS------DVVYSIHKAGSRDFVEKFAADLGGTVTHIERARFPIPRTYPFHRKRVRR 186 (198)
T ss_pred EECCCCccccccCCHHHHHHHHHhh------heEEEeeccccHHHHHHHHHhcCCeEEEEEEEEEecCccCchhhheeee
Confidence 99888743 223344444444442 23444455566777788889999999888 34455555554444433
Q ss_pred -CeEEEEEEe
Q 026274 219 -NIQLAEIVL 227 (241)
Q Consensus 219 -~~~l~~i~~ 227 (241)
.+.++.+.+
T Consensus 187 I~v~i~r~~k 196 (198)
T COG2263 187 IEVDIFRFEK 196 (198)
T ss_pred eeEEEEEEEe
Confidence 445555543
|
|
| >PF08241 Methyltransf_11: Methyltransferase domain; InterPro: IPR013216 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (SAM) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals | Back alignment and domain information |
|---|
Probab=99.52 E-value=5.8e-14 Score=100.95 Aligned_cols=94 Identities=21% Similarity=0.251 Sum_probs=76.1
Q ss_pred EEecCCCCHHHHHHHHh-CCEEEEEcCCCcHHHHHHHHHHHHHcCCceEEEEeecCCCCcCcCCCCCcEEEEcCCcCCCc
Q 026274 75 VELGAGTSLPGLVAAKV-GSNVTLTDDSNRIEVLKNMRRVCEMNKLNCRVMGLTWGFLDASIFDLNPNIILGADVFYDAS 153 (241)
Q Consensus 75 LElGcGtGl~sl~la~~-g~~V~~tD~~~~~~~l~~~~~n~~~n~~~~~~~~l~w~~~~~~~~~~~fDlIl~~dvly~~~ 153 (241)
||+|||+|..+..+++. +.+|+++|+++ ++++.++++....+.. +...+..+. +..+.+||+|++..++++.+
T Consensus 1 LdiG~G~G~~~~~l~~~~~~~v~~~D~~~--~~~~~~~~~~~~~~~~--~~~~d~~~l--~~~~~sfD~v~~~~~~~~~~ 74 (95)
T PF08241_consen 1 LDIGCGTGRFAAALAKRGGASVTGIDISE--EMLEQARKRLKNEGVS--FRQGDAEDL--PFPDNSFDVVFSNSVLHHLE 74 (95)
T ss_dssp EEET-TTSHHHHHHHHTTTCEEEEEES-H--HHHHHHHHHTTTSTEE--EEESBTTSS--SS-TT-EEEEEEESHGGGSS
T ss_pred CEecCcCCHHHHHHHhccCCEEEEEeCCH--HHHHHHHhcccccCch--heeehHHhC--ccccccccccccccceeecc
Confidence 89999999999999999 77999999995 6999999877655544 666666654 45567999999999999999
Q ss_pred cHHHHHHHHHHHhhcCCCeEEEE
Q 026274 154 AFDDLFATITYLLQSSPGSVFIT 176 (241)
Q Consensus 154 ~~~~ll~~~~~lL~~~~~~~~~~ 176 (241)
+...+++.+.++|+ |+|.+++
T Consensus 75 ~~~~~l~e~~rvLk--~gG~l~~ 95 (95)
T PF08241_consen 75 DPEAALREIYRVLK--PGGRLVI 95 (95)
T ss_dssp HHHHHHHHHHHHEE--EEEEEEE
T ss_pred CHHHHHHHHHHHcC--cCeEEeC
Confidence 99999999999999 6666553
|
The reaction is catalyzed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. This entry represents a methyltransferase domain found in a large variety of SAM-dependent methyltransferases including, but not limited to: Arsenite methyltransferase (2.1.1.137 from EC) which converts arsenical compounds to their methylated forms [] Biotin synthesis protein bioC, which is involved in the early stages of biotin biosyntheis [] Arginine N-methyltransferase 1, an arginine-methylating enzyme which acts on residues present in a glycine and argine-rich domain and can methylate histones [] Hexaprenyldihydroxybenzoate methyltransferase (2.1.1.114 from EC), a mitochodrial enzyme involved in ubiquinone biosynthesis [] A probable cobalt-precorrin-6Y C(15)-methyltransferase thought to be involved in adenosylcobalamin biosynthesis [] Sterol 24-C-methyltransferase (2.1.1.41 from EC), shown to participate in ergosterol biosynthesis [] 3-demethylubiquinone-9 3-methyltransferase (2.1.1.64 from EC) involved in ubiquinone biosynthesis [] Structural studies show that this domain forms the Rossman-like alpha-beta fold typical of SAM-dependent methyltransferases [, , ]. ; GO: 0008168 methyltransferase activity, 0008152 metabolic process; PDB: 3CGG_B 3CCF_B 3BKW_B 2PXX_A 3I9F_A 2YQZ_B 2YR0_A 3BUS_A 3EGE_A 3G5L_B .... |
| >TIGR00452 methyltransferase, putative | Back alignment and domain information |
|---|
Probab=99.51 E-value=8.1e-13 Score=116.29 Aligned_cols=148 Identities=12% Similarity=0.140 Sum_probs=101.4
Q ss_pred EeccHHHHHHHHHhccCCCCCCeEEEecCCCCHHHHHHHHhCC-EEEEEcCCCcHHHHHHHHHHHH--HcCCceEEEEee
Q 026274 51 VWPCSVILAEYVWQQRYRFSGANVVELGAGTSLPGLVAAKVGS-NVTLTDDSNRIEVLKNMRRVCE--MNKLNCRVMGLT 127 (241)
Q Consensus 51 ~W~~s~~L~~~l~~~~~~~~~~~VLElGcGtGl~sl~la~~g~-~V~~tD~~~~~~~l~~~~~n~~--~n~~~~~~~~l~ 127 (241)
.|.+......++.. ....++++|||+|||+|..+..++..|+ .|+++|.++ .|+..++...+ .+...+.+..++
T Consensus 103 e~~s~~~~~~~l~~-l~~~~g~~VLDvGCG~G~~~~~~~~~g~~~v~GiDpS~--~ml~q~~~~~~~~~~~~~v~~~~~~ 179 (314)
T TIGR00452 103 EWRSDIKWDRVLPH-LSPLKGRTILDVGCGSGYHMWRMLGHGAKSLVGIDPTV--LFLCQFEAVRKLLDNDKRAILEPLG 179 (314)
T ss_pred HHHHHHHHHHHHHh-cCCCCCCEEEEeccCCcHHHHHHHHcCCCEEEEEcCCH--HHHHHHHHHHHHhccCCCeEEEECC
Confidence 47766665555543 3456789999999999999999998887 799999996 57765433222 223345555555
Q ss_pred cCCCCcCcCCCCCcEEEEcCCcCCCccHHHHHHHHHHHhhcCCCeEEEEEee-------------ccC----------ch
Q 026274 128 WGFLDASIFDLNPNIILGADVFYDASAFDDLFATITYLLQSSPGSVFITTYH-------------NRS----------GH 184 (241)
Q Consensus 128 w~~~~~~~~~~~fDlIl~~dvly~~~~~~~ll~~~~~lL~~~~~~~~~~~~~-------------~r~----------~~ 184 (241)
..+... ..+||+|++..++||..+...+++.++++|+ +||.+++... .|+ ..
T Consensus 180 ie~lp~---~~~FD~V~s~gvL~H~~dp~~~L~el~r~Lk--pGG~Lvletl~i~g~~~~~l~p~~ry~k~~nv~flpS~ 254 (314)
T TIGR00452 180 IEQLHE---LYAFDTVFSMGVLYHRKSPLEHLKQLKHQLV--IKGELVLETLVIDGDLNTVLVPKDRYAKMKNVYFIPSV 254 (314)
T ss_pred HHHCCC---CCCcCEEEEcchhhccCCHHHHHHHHHHhcC--CCCEEEEEEEEecCccccccCchHHHHhccccccCCCH
Confidence 444321 2479999999999999999999999999998 4555443310 010 11
Q ss_pred hHHHHHHHHcCCEEEEEecCCC
Q 026274 185 HLIEFLMVKWGLKCVKLVDGFS 206 (241)
Q Consensus 185 ~~~~~~~~~~g~~~~~i~~~~~ 206 (241)
..+...+++.||+...+.+...
T Consensus 255 ~~L~~~L~~aGF~~V~i~~~~~ 276 (314)
T TIGR00452 255 SALKNWLEKVGFENFRILDVLK 276 (314)
T ss_pred HHHHHHHHHCCCeEEEEEeccC
Confidence 2334457899999988765444
|
Known examples to date are restricted to the proteobacteria. |
| >PRK12335 tellurite resistance protein TehB; Provisional | Back alignment and domain information |
|---|
Probab=99.51 E-value=1.1e-12 Score=114.38 Aligned_cols=98 Identities=20% Similarity=0.257 Sum_probs=81.7
Q ss_pred CCCCeEEEecCCCCHHHHHHHHhCCEEEEEcCCCcHHHHHHHHHHHHHcCCceEEEEeecCCCCcCcCCCCCcEEEEcCC
Q 026274 69 FSGANVVELGAGTSLPGLVAAKVGSNVTLTDDSNRIEVLKNMRRVCEMNKLNCRVMGLTWGFLDASIFDLNPNIILGADV 148 (241)
Q Consensus 69 ~~~~~VLElGcGtGl~sl~la~~g~~V~~tD~~~~~~~l~~~~~n~~~n~~~~~~~~l~w~~~~~~~~~~~fDlIl~~dv 148 (241)
.++.+|||+|||+|..++.+++.|.+|+++|+++ .+++.+++++..+++++++...|.... ..+++||+|+++.+
T Consensus 119 ~~~~~vLDlGcG~G~~~~~la~~g~~V~avD~s~--~ai~~~~~~~~~~~l~v~~~~~D~~~~---~~~~~fD~I~~~~v 193 (287)
T PRK12335 119 VKPGKALDLGCGQGRNSLYLALLGFDVTAVDINQ--QSLENLQEIAEKENLNIRTGLYDINSA---SIQEEYDFILSTVV 193 (287)
T ss_pred cCCCCEEEeCCCCCHHHHHHHHCCCEEEEEECCH--HHHHHHHHHHHHcCCceEEEEechhcc---cccCCccEEEEcch
Confidence 3456999999999999999999999999999995 699999999998888777766665432 23568999999999
Q ss_pred cCCC--ccHHHHHHHHHHHhhcCCCeE
Q 026274 149 FYDA--SAFDDLFATITYLLQSSPGSV 173 (241)
Q Consensus 149 ly~~--~~~~~ll~~~~~lL~~~~~~~ 173 (241)
+++. +....+++.+.++|+ +||.
T Consensus 194 l~~l~~~~~~~~l~~~~~~Lk--pgG~ 218 (287)
T PRK12335 194 LMFLNRERIPAIIKNMQEHTN--PGGY 218 (287)
T ss_pred hhhCCHHHHHHHHHHHHHhcC--CCcE
Confidence 8864 478899999999998 4554
|
|
| >PLN02336 phosphoethanolamine N-methyltransferase | Back alignment and domain information |
|---|
Probab=99.51 E-value=1.3e-12 Score=121.47 Aligned_cols=104 Identities=16% Similarity=0.123 Sum_probs=85.5
Q ss_pred CCCCCeEEEecCCCCHHHHHHHHh-CCEEEEEcCCCcHHHHHHHHHHHHHcCCceEEEEeecCCCCcCcCCCCCcEEEEc
Q 026274 68 RFSGANVVELGAGTSLPGLVAAKV-GSNVTLTDDSNRIEVLKNMRRVCEMNKLNCRVMGLTWGFLDASIFDLNPNIILGA 146 (241)
Q Consensus 68 ~~~~~~VLElGcGtGl~sl~la~~-g~~V~~tD~~~~~~~l~~~~~n~~~n~~~~~~~~l~w~~~~~~~~~~~fDlIl~~ 146 (241)
..++.+|||+|||+|..++.+++. +++|+++|+|+ ++++.+++|+.....++.+...|+... +..+.+||+|++.
T Consensus 264 ~~~~~~vLDiGcG~G~~~~~la~~~~~~v~gvDiS~--~~l~~A~~~~~~~~~~v~~~~~d~~~~--~~~~~~fD~I~s~ 339 (475)
T PLN02336 264 LKPGQKVLDVGCGIGGGDFYMAENFDVHVVGIDLSV--NMISFALERAIGRKCSVEFEVADCTKK--TYPDNSFDVIYSR 339 (475)
T ss_pred CCCCCEEEEEeccCCHHHHHHHHhcCCEEEEEECCH--HHHHHHHHHhhcCCCceEEEEcCcccC--CCCCCCEEEEEEC
Confidence 346779999999999999998875 77999999995 699999988765555677777777653 2234589999999
Q ss_pred CCcCCCccHHHHHHHHHHHhhcCCCeEEEEE
Q 026274 147 DVFYDASAFDDLFATITYLLQSSPGSVFITT 177 (241)
Q Consensus 147 dvly~~~~~~~ll~~~~~lL~~~~~~~~~~~ 177 (241)
++++|..+.+.+++.+.++|+ |||.+++.
T Consensus 340 ~~l~h~~d~~~~l~~~~r~Lk--pgG~l~i~ 368 (475)
T PLN02336 340 DTILHIQDKPALFRSFFKWLK--PGGKVLIS 368 (475)
T ss_pred CcccccCCHHHHHHHHHHHcC--CCeEEEEE
Confidence 999999999999999999998 56666655
|
|
| >PF13489 Methyltransf_23: Methyltransferase domain; PDB: 3JWJ_A 3JWH_B 2AOV_B 2AOT_A 1JQD_B 2AOX_A 1JQE_A 2AOU_B 2AOW_A 3DLI_C | Back alignment and domain information |
|---|
Probab=99.50 E-value=1.2e-13 Score=109.01 Aligned_cols=100 Identities=24% Similarity=0.294 Sum_probs=77.1
Q ss_pred CCCCCeEEEecCCCCHHHHHHHHhCCEEEEEcCCCcHHHHHHHHHHHHHcCCceEEEEeecCCCCcCcCCCCCcEEEEcC
Q 026274 68 RFSGANVVELGAGTSLPGLVAAKVGSNVTLTDDSNRIEVLKNMRRVCEMNKLNCRVMGLTWGFLDASIFDLNPNIILGAD 147 (241)
Q Consensus 68 ~~~~~~VLElGcGtGl~sl~la~~g~~V~~tD~~~~~~~l~~~~~n~~~n~~~~~~~~l~w~~~~~~~~~~~fDlIl~~d 147 (241)
..++++|||+|||+|..+..+++.|.+|+++|+++ .+++. ........+-. .....+.+||+|++++
T Consensus 20 ~~~~~~vLDiGcG~G~~~~~l~~~~~~~~g~D~~~--~~~~~---------~~~~~~~~~~~--~~~~~~~~fD~i~~~~ 86 (161)
T PF13489_consen 20 LKPGKRVLDIGCGTGSFLRALAKRGFEVTGVDISP--QMIEK---------RNVVFDNFDAQ--DPPFPDGSFDLIICND 86 (161)
T ss_dssp TTTTSEEEEESSTTSHHHHHHHHTTSEEEEEESSH--HHHHH---------TTSEEEEEECH--THHCHSSSEEEEEEES
T ss_pred cCCCCEEEEEcCCCCHHHHHHHHhCCEEEEEECCH--HHHhh---------hhhhhhhhhhh--hhhccccchhhHhhHH
Confidence 45778999999999999999999999999999995 46655 22222222111 1122356899999999
Q ss_pred CcCCCccHHHHHHHHHHHhhcCCCeEEEEEeeccC
Q 026274 148 VFYDASAFDDLFATITYLLQSSPGSVFITTYHNRS 182 (241)
Q Consensus 148 vly~~~~~~~ll~~~~~lL~~~~~~~~~~~~~~r~ 182 (241)
+++|.++...+++.+.++|+ |||.+++....+.
T Consensus 87 ~l~~~~d~~~~l~~l~~~Lk--pgG~l~~~~~~~~ 119 (161)
T PF13489_consen 87 VLEHLPDPEEFLKELSRLLK--PGGYLVISDPNRD 119 (161)
T ss_dssp SGGGSSHHHHHHHHHHHCEE--EEEEEEEEEEBTT
T ss_pred HHhhcccHHHHHHHHHHhcC--CCCEEEEEEcCCc
Confidence 99999999999999999999 6687777766553
|
... |
| >PRK15001 SAM-dependent 23S ribosomal RNA mG1835 methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.50 E-value=1.7e-12 Score=116.82 Aligned_cols=115 Identities=17% Similarity=0.178 Sum_probs=82.5
Q ss_pred ccHHHHHHHHHhccCCCCCCeEEEecCCCCHHHHHHHHhC--CEEEEEcCCCcHHHHHHHHHHHHHcCCc----eEEEEe
Q 026274 53 PCSVILAEYVWQQRYRFSGANVVELGAGTSLPGLVAAKVG--SNVTLTDDSNRIEVLKNMRRVCEMNKLN----CRVMGL 126 (241)
Q Consensus 53 ~~s~~L~~~l~~~~~~~~~~~VLElGcGtGl~sl~la~~g--~~V~~tD~~~~~~~l~~~~~n~~~n~~~----~~~~~l 126 (241)
.++.+|.+++.. ..+.+|||||||+|.+|+.+++.+ ++|+++|+|+ .|++.+++|++.|+.. +++.
T Consensus 215 ~GtrllL~~lp~----~~~~~VLDLGCGtGvi~i~la~~~P~~~V~~vD~S~--~Av~~A~~N~~~n~~~~~~~v~~~-- 286 (378)
T PRK15001 215 IGARFFMQHLPE----NLEGEIVDLGCGNGVIGLTLLDKNPQAKVVFVDESP--MAVASSRLNVETNMPEALDRCEFM-- 286 (378)
T ss_pred hHHHHHHHhCCc----ccCCeEEEEeccccHHHHHHHHhCCCCEEEEEECCH--HHHHHHHHHHHHcCcccCceEEEE--
Confidence 344555555432 234589999999999999999974 5999999995 6999999999988743 3443
Q ss_pred ecCCCCcCcCCCCCcEEEEcCCcCCC-----ccHHHHHHHHHHHhhcCCCeEEEEEe
Q 026274 127 TWGFLDASIFDLNPNIILGADVFYDA-----SAFDDLFATITYLLQSSPGSVFITTY 178 (241)
Q Consensus 127 ~w~~~~~~~~~~~fDlIl~~dvly~~-----~~~~~ll~~~~~lL~~~~~~~~~~~~ 178 (241)
+++......+.+||+|+++.+++.. .....+++...++|+ +||.+++..
T Consensus 287 -~~D~l~~~~~~~fDlIlsNPPfh~~~~~~~~ia~~l~~~a~~~Lk--pGG~L~iV~ 340 (378)
T PRK15001 287 -INNALSGVEPFRFNAVLCNPPFHQQHALTDNVAWEMFHHARRCLK--INGELYIVA 340 (378)
T ss_pred -EccccccCCCCCEEEEEECcCcccCccCCHHHHHHHHHHHHHhcc--cCCEEEEEE
Confidence 3433333334589999998887653 235678888999998 566666554
|
|
| >PRK13168 rumA 23S rRNA m(5)U1939 methyltransferase; Reviewed | Back alignment and domain information |
|---|
Probab=99.50 E-value=7.5e-13 Score=122.04 Aligned_cols=150 Identities=13% Similarity=0.071 Sum_probs=109.3
Q ss_pred HHHHHHHHHhccCCCCCCeEEEecCCCCHHHHHHHHhCCEEEEEcCCCcHHHHHHHHHHHHHcCC-ceEEEEeecCCCCc
Q 026274 55 SVILAEYVWQQRYRFSGANVVELGAGTSLPGLVAAKVGSNVTLTDDSNRIEVLKNMRRVCEMNKL-NCRVMGLTWGFLDA 133 (241)
Q Consensus 55 s~~L~~~l~~~~~~~~~~~VLElGcGtGl~sl~la~~g~~V~~tD~~~~~~~l~~~~~n~~~n~~-~~~~~~l~w~~~~~ 133 (241)
+..|.+.+.......++.+|||+|||+|.+++.+|+.+.+|+++|+++ +|++.+++|++.|+. ++++...|+.+...
T Consensus 282 ~e~l~~~vl~~l~~~~~~~VLDlgcGtG~~sl~la~~~~~V~gvD~s~--~al~~A~~n~~~~~~~~v~~~~~d~~~~l~ 359 (443)
T PRK13168 282 NQKMVARALEWLDPQPGDRVLDLFCGLGNFTLPLARQAAEVVGVEGVE--AMVERARENARRNGLDNVTFYHANLEEDFT 359 (443)
T ss_pred HHHHHHHHHHHhcCCCCCEEEEEeccCCHHHHHHHHhCCEEEEEeCCH--HHHHHHHHHHHHcCCCceEEEEeChHHhhh
Confidence 455666665544445678999999999999999999988999999995 799999999998886 57888888765322
Q ss_pred C--cCCCCCcEEEEcCCcCCCccHHHHHHHHHHHhhcCCCeEEEEEeeccCchhHHHHHHHHcCCEEEEE--ecCCCCCC
Q 026274 134 S--IFDLNPNIILGADVFYDASAFDDLFATITYLLQSSPGSVFITTYHNRSGHHLIEFLMVKWGLKCVKL--VDGFSFLP 209 (241)
Q Consensus 134 ~--~~~~~fDlIl~~dvly~~~~~~~ll~~~~~lL~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~i--~~~~~~~p 209 (241)
. ..+.+||+|++..+ |.- ....++.+.++ .++.++|+++.+.........+ .+.||+++.+ .|.|+.++
T Consensus 360 ~~~~~~~~fD~Vi~dPP-r~g--~~~~~~~l~~~---~~~~ivyvSCnp~tlaRDl~~L-~~~gY~l~~i~~~DmFP~T~ 432 (443)
T PRK13168 360 DQPWALGGFDKVLLDPP-RAG--AAEVMQALAKL---GPKRIVYVSCNPATLARDAGVL-VEAGYRLKRAGMLDMFPHTG 432 (443)
T ss_pred hhhhhcCCCCEEEECcC-CcC--hHHHHHHHHhc---CCCeEEEEEeChHHhhccHHHH-hhCCcEEEEEEEeccCCCCC
Confidence 1 22357999997544 331 33445555553 4788899988776655555554 3578999887 88888887
Q ss_pred cccc
Q 026274 210 HYKA 213 (241)
Q Consensus 210 ~~~~ 213 (241)
|.+.
T Consensus 433 HvE~ 436 (443)
T PRK13168 433 HVES 436 (443)
T ss_pred cEEE
Confidence 7753
|
|
| >TIGR00138 gidB 16S rRNA methyltransferase GidB | Back alignment and domain information |
|---|
Probab=99.49 E-value=1.1e-12 Score=107.04 Aligned_cols=121 Identities=18% Similarity=0.267 Sum_probs=89.5
Q ss_pred CCCCeEEEecCCCCHHHHHHHHhC--CEEEEEcCCCcHHHHHHHHHHHHHcCC-ceEEEEeecCCCCcCcCCCCCcEEEE
Q 026274 69 FSGANVVELGAGTSLPGLVAAKVG--SNVTLTDDSNRIEVLKNMRRVCEMNKL-NCRVMGLTWGFLDASIFDLNPNIILG 145 (241)
Q Consensus 69 ~~~~~VLElGcGtGl~sl~la~~g--~~V~~tD~~~~~~~l~~~~~n~~~n~~-~~~~~~l~w~~~~~~~~~~~fDlIl~ 145 (241)
.++.+|||+|||+|.+++.++..+ ++|+++|.++ +|++.+++|++.++. ++++...++.+.. ...+||+|++
T Consensus 41 ~~~~~vLDiGcGtG~~s~~la~~~~~~~V~~iD~s~--~~~~~a~~~~~~~~~~~i~~i~~d~~~~~---~~~~fD~I~s 115 (181)
T TIGR00138 41 LDGKKVIDIGSGAGFPGIPLAIARPELKLTLLESNH--KKVAFLREVKAELGLNNVEIVNGRAEDFQ---HEEQFDVITS 115 (181)
T ss_pred cCCCeEEEecCCCCccHHHHHHHCCCCeEEEEeCcH--HHHHHHHHHHHHhCCCCeEEEecchhhcc---ccCCccEEEe
Confidence 357899999999999999998764 4899999996 699999999988876 4777777776531 2458999987
Q ss_pred cCCcCCCccHHHHHHHHHHHhhcCCCeEEEEEeeccCchhHHHHH---HHHcCCEEEEE
Q 026274 146 ADVFYDASAFDDLFATITYLLQSSPGSVFITTYHNRSGHHLIEFL---MVKWGLKCVKL 201 (241)
Q Consensus 146 ~dvly~~~~~~~ll~~~~~lL~~~~~~~~~~~~~~r~~~~~~~~~---~~~~g~~~~~i 201 (241)
.. ..+++.+++.+.++|+ +||.+++.+..... .....+ +...|++....
T Consensus 116 ~~----~~~~~~~~~~~~~~Lk--pgG~lvi~~~~~~~-~~~~~~~e~~~~~~~~~~~~ 167 (181)
T TIGR00138 116 RA----LASLNVLLELTLNLLK--VGGYFLAYKGKKYL-DEIEEAKRKCQVLGVEPLEV 167 (181)
T ss_pred hh----hhCHHHHHHHHHHhcC--CCCEEEEEcCCCcH-HHHHHHHHhhhhcCceEeec
Confidence 54 3457788899999998 66766665443332 223333 33478887776
|
GidB (glucose-inhibited division protein B) appears to be present and in a single copy in nearly all complete eubacterial genomes. It is missing only from some obligate intracellular species of various lineages (Chlamydiae, Ehrlichia, Wolbachia, Anaplasma, Buchnera, etc.). GidB shows a methytransferase fold in its the crystal structure, and acts as a 7-methylguanosine (m(7)G) methyltransferase, apparently specific to 16S rRNA. |
| >PRK05134 bifunctional 3-demethylubiquinone-9 3-methyltransferase/ 2-octaprenyl-6-hydroxy phenol methylase; Provisional | Back alignment and domain information |
|---|
Probab=99.49 E-value=1.6e-12 Score=109.73 Aligned_cols=117 Identities=17% Similarity=0.200 Sum_probs=93.6
Q ss_pred HHHHHHHhccCCCCCCeEEEecCCCCHHHHHHHHhCCEEEEEcCCCcHHHHHHHHHHHHHcCCceEEEEeecCCCCcCcC
Q 026274 57 ILAEYVWQQRYRFSGANVVELGAGTSLPGLVAAKVGSNVTLTDDSNRIEVLKNMRRVCEMNKLNCRVMGLTWGFLDASIF 136 (241)
Q Consensus 57 ~L~~~l~~~~~~~~~~~VLElGcGtGl~sl~la~~g~~V~~tD~~~~~~~l~~~~~n~~~n~~~~~~~~l~w~~~~~~~~ 136 (241)
.-.+|+.......++.+|||||||+|.++..+++.+++|+++|.++ ++++.+++++..++..+.+...++.+... ..
T Consensus 35 ~~~~~l~~~~~~~~~~~vLdiG~G~G~~~~~l~~~~~~v~~iD~s~--~~~~~a~~~~~~~~~~~~~~~~~~~~~~~-~~ 111 (233)
T PRK05134 35 LRLNYIREHAGGLFGKRVLDVGCGGGILSESMARLGADVTGIDASE--ENIEVARLHALESGLKIDYRQTTAEELAA-EH 111 (233)
T ss_pred HHHHHHHHhccCCCCCeEEEeCCCCCHHHHHHHHcCCeEEEEcCCH--HHHHHHHHHHHHcCCceEEEecCHHHhhh-hc
Confidence 3346666655556788999999999999999999999999999995 69999999888777777776666654421 12
Q ss_pred CCCCcEEEEcCCcCCCccHHHHHHHHHHHhhcCCCeEEEEEe
Q 026274 137 DLNPNIILGADVFYDASAFDDLFATITYLLQSSPGSVFITTY 178 (241)
Q Consensus 137 ~~~fDlIl~~dvly~~~~~~~ll~~~~~lL~~~~~~~~~~~~ 178 (241)
..+||+|+++.++++..+...+++.+.++|+ ++|.+++..
T Consensus 112 ~~~fD~Ii~~~~l~~~~~~~~~l~~~~~~L~--~gG~l~v~~ 151 (233)
T PRK05134 112 PGQFDVVTCMEMLEHVPDPASFVRACAKLVK--PGGLVFFST 151 (233)
T ss_pred CCCccEEEEhhHhhccCCHHHHHHHHHHHcC--CCcEEEEEe
Confidence 3589999999999999999999999999998 556665553
|
|
| >PF03848 TehB: Tellurite resistance protein TehB; InterPro: IPR015985 Tellurite resistance protein TehB is part of a tellurite-reducing operon tehA and tehB | Back alignment and domain information |
|---|
Probab=99.48 E-value=5e-13 Score=109.38 Aligned_cols=103 Identities=21% Similarity=0.262 Sum_probs=81.3
Q ss_pred CCCCCCeEEEecCCCCHHHHHHHHhCCEEEEEcCCCcHHHHHHHHHHHHHcCCceEEEEeecCCCCcCcCCCCCcEEEEc
Q 026274 67 YRFSGANVVELGAGTSLPGLVAAKVGSNVTLTDDSNRIEVLKNMRRVCEMNKLNCRVMGLTWGFLDASIFDLNPNIILGA 146 (241)
Q Consensus 67 ~~~~~~~VLElGcGtGl~sl~la~~g~~V~~tD~~~~~~~l~~~~~n~~~n~~~~~~~~l~w~~~~~~~~~~~fDlIl~~ 146 (241)
...++.++||||||.|..+++||++|..|+++|+|+ .+++.+++.++..+++++....|..+.. .+..||+|++.
T Consensus 27 ~~~~~g~~LDlgcG~GRNalyLA~~G~~VtAvD~s~--~al~~l~~~a~~~~l~i~~~~~Dl~~~~---~~~~yD~I~st 101 (192)
T PF03848_consen 27 PLLKPGKALDLGCGEGRNALYLASQGFDVTAVDISP--VALEKLQRLAEEEGLDIRTRVADLNDFD---FPEEYDFIVST 101 (192)
T ss_dssp TTS-SSEEEEES-TTSHHHHHHHHTT-EEEEEESSH--HHHHHHHHHHHHTT-TEEEEE-BGCCBS----TTTEEEEEEE
T ss_pred hhcCCCcEEEcCCCCcHHHHHHHHCCCeEEEEECCH--HHHHHHHHHHhhcCceeEEEEecchhcc---ccCCcCEEEEE
Confidence 345678999999999999999999999999999995 6999999999999999988888876543 34589999988
Q ss_pred CCcCC--CccHHHHHHHHHHHhhcCCCeEEEE
Q 026274 147 DVFYD--ASAFDDLFATITYLLQSSPGSVFIT 176 (241)
Q Consensus 147 dvly~--~~~~~~ll~~~~~lL~~~~~~~~~~ 176 (241)
-|+++ ++..+.+++.++..++ |||++++
T Consensus 102 ~v~~fL~~~~~~~i~~~m~~~~~--pGG~~li 131 (192)
T PF03848_consen 102 VVFMFLQRELRPQIIENMKAATK--PGGYNLI 131 (192)
T ss_dssp SSGGGS-GGGHHHHHHHHHHTEE--EEEEEEE
T ss_pred EEeccCCHHHHHHHHHHHHhhcC--CcEEEEE
Confidence 77765 5678889999999998 5665443
|
When present in high copy number, TehB is responsible for potassium tellurite resistance, probably by increasing the reduction rate of tellurite to metallic tellurium within the bacterium. TehB is a cytoplasmic protein which possesses three conserved motifs (I, II, and III) found in S-adenosyl-L-methionine (SAM)-dependent non-nucleic acid methyltransferases []. Conformational changes in TehB are observed upon binding of both tellurite and SAM, suggesting that TehB utilises a methyltransferase activity in the detoxification of tellurite. This entry represents the methyltransferase domain found in all TehB proteins.; PDB: 2KW5_A 3MER_B 3M70_A 2I6G_A 4DQ0_D 2XVA_B 2XVM_A. |
| >PTZ00098 phosphoethanolamine N-methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.47 E-value=1.9e-12 Score=111.57 Aligned_cols=118 Identities=13% Similarity=0.085 Sum_probs=86.7
Q ss_pred ccHHHHHHHHHhccCCCCCCeEEEecCCCCHHHHHHHHh-CCEEEEEcCCCcHHHHHHHHHHHHHcCCceEEEEeecCCC
Q 026274 53 PCSVILAEYVWQQRYRFSGANVVELGAGTSLPGLVAAKV-GSNVTLTDDSNRIEVLKNMRRVCEMNKLNCRVMGLTWGFL 131 (241)
Q Consensus 53 ~~s~~L~~~l~~~~~~~~~~~VLElGcGtGl~sl~la~~-g~~V~~tD~~~~~~~l~~~~~n~~~n~~~~~~~~l~w~~~ 131 (241)
+.+..-+..+.......++.+|||+|||+|..+..+++. +++|+++|+++ ++++.++++... ..++.+...+..+.
T Consensus 35 ~gg~~~~~~~l~~l~l~~~~~VLDiGcG~G~~a~~la~~~~~~v~giD~s~--~~~~~a~~~~~~-~~~i~~~~~D~~~~ 111 (263)
T PTZ00098 35 SGGIEATTKILSDIELNENSKVLDIGSGLGGGCKYINEKYGAHVHGVDICE--KMVNIAKLRNSD-KNKIEFEANDILKK 111 (263)
T ss_pred CCchHHHHHHHHhCCCCCCCEEEEEcCCCChhhHHHHhhcCCEEEEEECCH--HHHHHHHHHcCc-CCceEEEECCcccC
Confidence 333434444544445567789999999999999888764 67999999995 699988887654 33466666655432
Q ss_pred CcCcCCCCCcEEEEcCCcCCCc--cHHHHHHHHHHHhhcCCCeEEEEE
Q 026274 132 DASIFDLNPNIILGADVFYDAS--AFDDLFATITYLLQSSPGSVFITT 177 (241)
Q Consensus 132 ~~~~~~~~fDlIl~~dvly~~~--~~~~ll~~~~~lL~~~~~~~~~~~ 177 (241)
+..+.+||+|++.++++|.. +...+++.+.++|+ |||.+++.
T Consensus 112 --~~~~~~FD~V~s~~~l~h~~~~d~~~~l~~i~r~Lk--PGG~lvi~ 155 (263)
T PTZ00098 112 --DFPENTFDMIYSRDAILHLSYADKKKLFEKCYKWLK--PNGILLIT 155 (263)
T ss_pred --CCCCCCeEEEEEhhhHHhCCHHHHHHHHHHHHHHcC--CCcEEEEE
Confidence 33456899999999998864 78899999999998 55655544
|
|
| >PRK03522 rumB 23S rRNA methyluridine methyltransferase; Reviewed | Back alignment and domain information |
|---|
Probab=99.47 E-value=1.5e-12 Score=115.02 Aligned_cols=134 Identities=16% Similarity=0.182 Sum_probs=100.0
Q ss_pred CCCCeEEEecCCCCHHHHHHHHhCCEEEEEcCCCcHHHHHHHHHHHHHcCC-ceEEEEeecCCCCcCcCCCCCcEEEEcC
Q 026274 69 FSGANVVELGAGTSLPGLVAAKVGSNVTLTDDSNRIEVLKNMRRVCEMNKL-NCRVMGLTWGFLDASIFDLNPNIILGAD 147 (241)
Q Consensus 69 ~~~~~VLElGcGtGl~sl~la~~g~~V~~tD~~~~~~~l~~~~~n~~~n~~-~~~~~~l~w~~~~~~~~~~~fDlIl~~d 147 (241)
.++.+|||+|||+|.+++.+|+.+.+|+++|+++ ++++.+++|++.+++ ++++...|..+.... ...+||+|+..+
T Consensus 172 ~~~~~VLDl~cG~G~~sl~la~~~~~V~gvD~s~--~av~~A~~n~~~~~l~~v~~~~~D~~~~~~~-~~~~~D~Vv~dP 248 (315)
T PRK03522 172 LPPRSMWDLFCGVGGFGLHCATPGMQLTGIEISA--EAIACAKQSAAELGLTNVQFQALDSTQFATA-QGEVPDLVLVNP 248 (315)
T ss_pred cCCCEEEEccCCCCHHHHHHHhcCCEEEEEeCCH--HHHHHHHHHHHHcCCCceEEEEcCHHHHHHh-cCCCCeEEEECC
Confidence 3567999999999999999999999999999995 799999999999987 477777776543221 234799999876
Q ss_pred CcCCCccHHHHHHHHHHHhhcCCCeEEEEEeeccCchhHHHHHHHHcCCEEEEE--ecCCCCCCcccc
Q 026274 148 VFYDASAFDDLFATITYLLQSSPGSVFITTYHNRSGHHLIEFLMVKWGLKCVKL--VDGFSFLPHYKA 213 (241)
Q Consensus 148 vly~~~~~~~ll~~~~~lL~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~i--~~~~~~~p~~~~ 213 (241)
+- ......+++.+.. .+++.++|+++.+.........+ .||++..+ .|.|+.++|.+.
T Consensus 249 Pr--~G~~~~~~~~l~~---~~~~~ivyvsc~p~t~~rd~~~l---~~y~~~~~~~~DmFP~T~HvE~ 308 (315)
T PRK03522 249 PR--RGIGKELCDYLSQ---MAPRFILYSSCNAQTMAKDLAHL---PGYRIERVQLFDMFPHTAHYEV 308 (315)
T ss_pred CC--CCccHHHHHHHHH---cCCCeEEEEECCcccchhHHhhc---cCcEEEEEEEeccCCCCCeEEE
Confidence 62 2233445455444 34678999888776666555555 48888877 888888877653
|
|
| >TIGR03704 PrmC_rel_meth putative protein-(glutamine-N5) methyltransferase, unknown substrate-specific | Back alignment and domain information |
|---|
Probab=99.46 E-value=3.6e-12 Score=109.12 Aligned_cols=141 Identities=16% Similarity=0.086 Sum_probs=99.2
Q ss_pred cHHHHHHHHHhccC-CCCCCeEEEecCCCCHHHHHHHHh--CCEEEEEcCCCcHHHHHHHHHHHHHcCCceEEEEeecCC
Q 026274 54 CSVILAEYVWQQRY-RFSGANVVELGAGTSLPGLVAAKV--GSNVTLTDDSNRIEVLKNMRRVCEMNKLNCRVMGLTWGF 130 (241)
Q Consensus 54 ~s~~L~~~l~~~~~-~~~~~~VLElGcGtGl~sl~la~~--g~~V~~tD~~~~~~~l~~~~~n~~~n~~~~~~~~l~w~~ 130 (241)
.+..|.+.+..... ...+.+|||+|||+|.+++.+++. +.+|+++|+++ .+++.+++|+..|+. ++...|+.+
T Consensus 69 ~Te~Lv~~~l~~~~~~~~~~~vLDlg~GsG~i~l~la~~~~~~~v~~vDis~--~al~~A~~N~~~~~~--~~~~~D~~~ 144 (251)
T TIGR03704 69 RTEFLVDEAAALARPRSGTLVVVDLCCGSGAVGAALAAALDGIELHAADIDP--AAVRCARRNLADAGG--TVHEGDLYD 144 (251)
T ss_pred cHHHHHHHHHHhhcccCCCCEEEEecCchHHHHHHHHHhCCCCEEEEEECCH--HHHHHHHHHHHHcCC--EEEEeechh
Confidence 45666666554322 123458999999999999999875 45999999995 799999999998874 566677654
Q ss_pred CCcCcCCCCCcEEEEcCCcCCCc--------------------------cHHHHHHHHHHHhhcCCCeEEEEEeeccCch
Q 026274 131 LDASIFDLNPNIILGADVFYDAS--------------------------AFDDLFATITYLLQSSPGSVFITTYHNRSGH 184 (241)
Q Consensus 131 ~~~~~~~~~fDlIl~~dvly~~~--------------------------~~~~ll~~~~~lL~~~~~~~~~~~~~~r~~~ 184 (241)
........+||+|+++.+..-.. .+..+++...++|+ ++|.+++.+...+.
T Consensus 145 ~l~~~~~~~fDlVv~NPPy~~~~~~~~~~~e~~~~ep~~al~gg~dgl~~~~~i~~~a~~~L~--~gG~l~l~~~~~~~- 221 (251)
T TIGR03704 145 ALPTALRGRVDILAANAPYVPTDAIALMPPEARDHEPRVALDGGADGLDVLRRVAAGAPDWLA--PGGHLLVETSERQA- 221 (251)
T ss_pred hcchhcCCCEeEEEECCCCCCchhhhcCCHHHHhCCCHHHhcCCCcHHHHHHHHHHHHHHhcC--CCCEEEEEECcchH-
Confidence 32221234799999887754211 14577788889998 66777777665444
Q ss_pred hHHHHHHHHcCCEEEEE
Q 026274 185 HLIEFLMVKWGLKCVKL 201 (241)
Q Consensus 185 ~~~~~~~~~~g~~~~~i 201 (241)
..+..+++++||....+
T Consensus 222 ~~v~~~l~~~g~~~~~~ 238 (251)
T TIGR03704 222 PLAVEAFARAGLIARVA 238 (251)
T ss_pred HHHHHHHHHCCCCceee
Confidence 34555677889987776
|
This protein family is closely related to two different families of protein-(glutamine-N5) methyltransferase. The first is PrmB, which modifies ribosomal protein L3 in some bacteria. The second is PrmC (HemK), which modifies peptide chain release factors 1 and 2 in most bacteria and also in eukaryotes. The glutamine side chain-binding motif NPPY shared by PrmB and PrmC is N[VAT]PY in this family. The protein substrate is unknown. |
| >PRK14966 unknown domain/N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase fusion protein; Provisional | Back alignment and domain information |
|---|
Probab=99.46 E-value=5e-12 Score=114.31 Aligned_cols=141 Identities=16% Similarity=0.132 Sum_probs=101.3
Q ss_pred ccHHHHHHHHHhccCCCCCCeEEEecCCCCHHHHHHHHh--CCEEEEEcCCCcHHHHHHHHHHHHHcCCceEEEEeecCC
Q 026274 53 PCSVILAEYVWQQRYRFSGANVVELGAGTSLPGLVAAKV--GSNVTLTDDSNRIEVLKNMRRVCEMNKLNCRVMGLTWGF 130 (241)
Q Consensus 53 ~~s~~L~~~l~~~~~~~~~~~VLElGcGtGl~sl~la~~--g~~V~~tD~~~~~~~l~~~~~n~~~n~~~~~~~~l~w~~ 130 (241)
+.+..+.+.+..... ++.+|||+|||+|.+++.+++. +++|+++|+|+ +|++.+++|++.++.++++...||.+
T Consensus 236 peTE~LVe~aL~~l~--~~~rVLDLGcGSG~IaiaLA~~~p~a~VtAVDiS~--~ALe~AreNa~~~g~rV~fi~gDl~e 311 (423)
T PRK14966 236 PETEHLVEAVLARLP--ENGRVWDLGTGSGAVAVTVALERPDAFVRASDISP--PALETARKNAADLGARVEFAHGSWFD 311 (423)
T ss_pred ccHHHHHHHhhhccC--CCCEEEEEeChhhHHHHHHHHhCCCCEEEEEECCH--HHHHHHHHHHHHcCCcEEEEEcchhc
Confidence 556677777765422 4568999999999999999875 45999999995 79999999999988888888888854
Q ss_pred CCcCcCCCCCcEEEEcCCcCCCc-------------------------cHHHHHHHHHHHhhcCCCeEEEEEeeccCchh
Q 026274 131 LDASIFDLNPNIILGADVFYDAS-------------------------AFDDLFATITYLLQSSPGSVFITTYHNRSGHH 185 (241)
Q Consensus 131 ~~~~~~~~~fDlIl~~dvly~~~-------------------------~~~~ll~~~~~lL~~~~~~~~~~~~~~r~~~~ 185 (241)
...+ ...+||+|+++++..... .+..+++.+.+.|+ ++|.+++..... ...
T Consensus 312 ~~l~-~~~~FDLIVSNPPYI~~~e~~l~~~~v~~EP~~AL~gG~dGL~~yr~Ii~~a~~~Lk--pgG~lilEiG~~-Q~e 387 (423)
T PRK14966 312 TDMP-SEGKWDIIVSNPPYIENGDKHLLQGDLRFEPQIALTDFSDGLSCIRTLAQGAPDRLA--EGGFLLLEHGFD-QGA 387 (423)
T ss_pred cccc-cCCCccEEEECCCCCCcchhhhcchhhhcCHHHHhhCCCchHHHHHHHHHHHHHhcC--CCcEEEEEECcc-HHH
Confidence 3211 134799999988753211 24567777788887 566666654443 234
Q ss_pred HHHHHHHHcCCEEEEE
Q 026274 186 LIEFLMVKWGLKCVKL 201 (241)
Q Consensus 186 ~~~~~~~~~g~~~~~i 201 (241)
....++++.||....+
T Consensus 388 ~V~~ll~~~Gf~~v~v 403 (423)
T PRK14966 388 AVRGVLAENGFSGVET 403 (423)
T ss_pred HHHHHHHHCCCcEEEE
Confidence 4566667789876665
|
|
| >PLN02233 ubiquinone biosynthesis methyltransferase | Back alignment and domain information |
|---|
Probab=99.45 E-value=6.1e-12 Score=108.32 Aligned_cols=102 Identities=19% Similarity=0.067 Sum_probs=79.7
Q ss_pred CCCCCeEEEecCCCCHHHHHHHHh-C--CEEEEEcCCCcHHHHHHHHHHHHH----cCCceEEEEeecCCCCcCcCCCCC
Q 026274 68 RFSGANVVELGAGTSLPGLVAAKV-G--SNVTLTDDSNRIEVLKNMRRVCEM----NKLNCRVMGLTWGFLDASIFDLNP 140 (241)
Q Consensus 68 ~~~~~~VLElGcGtGl~sl~la~~-g--~~V~~tD~~~~~~~l~~~~~n~~~----n~~~~~~~~l~w~~~~~~~~~~~f 140 (241)
..++.+|||+|||||..+..+++. + .+|+++|+++ +|++.++++... ...++++...+..+. +..+++|
T Consensus 71 ~~~~~~VLDlGcGtG~~~~~la~~~~~~~~V~gvD~S~--~ml~~A~~r~~~~~~~~~~~i~~~~~d~~~l--p~~~~sf 146 (261)
T PLN02233 71 AKMGDRVLDLCCGSGDLAFLLSEKVGSDGKVMGLDFSS--EQLAVAASRQELKAKSCYKNIEWIEGDATDL--PFDDCYF 146 (261)
T ss_pred CCCCCEEEEECCcCCHHHHHHHHHhCCCCEEEEEECCH--HHHHHHHHHhhhhhhccCCCeEEEEcccccC--CCCCCCE
Confidence 345789999999999999988875 4 4899999995 799999876532 123566666665543 3445689
Q ss_pred cEEEEcCCcCCCccHHHHHHHHHHHhhcCCCeEEE
Q 026274 141 NIILGADVFYDASAFDDLFATITYLLQSSPGSVFI 175 (241)
Q Consensus 141 DlIl~~dvly~~~~~~~ll~~~~~lL~~~~~~~~~ 175 (241)
|+|+++.++++.++...+++.+.++|+ |||.++
T Consensus 147 D~V~~~~~l~~~~d~~~~l~ei~rvLk--pGG~l~ 179 (261)
T PLN02233 147 DAITMGYGLRNVVDRLKAMQEMYRVLK--PGSRVS 179 (261)
T ss_pred eEEEEecccccCCCHHHHHHHHHHHcC--cCcEEE
Confidence 999999999999999999999999998 455443
|
|
| >COG2890 HemK Methylase of polypeptide chain release factors [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=99.45 E-value=4.7e-12 Score=109.98 Aligned_cols=139 Identities=20% Similarity=0.254 Sum_probs=94.4
Q ss_pred ccHHHHHHHHHhccCCCCCCeEEEecCCCCHHHHHHHHhCC--EEEEEcCCCcHHHHHHHHHHHHHcCC-ceEEEEeecC
Q 026274 53 PCSVILAEYVWQQRYRFSGANVVELGAGTSLPGLVAAKVGS--NVTLTDDSNRIEVLKNMRRVCEMNKL-NCRVMGLTWG 129 (241)
Q Consensus 53 ~~s~~L~~~l~~~~~~~~~~~VLElGcGtGl~sl~la~~g~--~V~~tD~~~~~~~l~~~~~n~~~n~~-~~~~~~l~w~ 129 (241)
+.+..|.+.+...... .+.+|||||||||.+++.+++.+. +|+++|+|+ ++++.+++|+..|++ ++.+...+|.
T Consensus 94 ~dTe~Lve~~l~~~~~-~~~~ilDlGTGSG~iai~la~~~~~~~V~a~Dis~--~Al~~A~~Na~~~~l~~~~~~~~dlf 170 (280)
T COG2890 94 PDTELLVEAALALLLQ-LDKRILDLGTGSGAIAIALAKEGPDAEVIAVDISP--DALALARENAERNGLVRVLVVQSDLF 170 (280)
T ss_pred CchHHHHHHHHHhhhh-cCCcEEEecCChHHHHHHHHhhCcCCeEEEEECCH--HHHHHHHHHHHHcCCccEEEEeeecc
Confidence 4455566664421111 111799999999999999999875 999999995 799999999999995 3333444665
Q ss_pred CCCcCcCCCCCcEEEEcCCcCCCc-------------------------cHHHHHHHHHHHhhcCCCeEEEEEeeccCch
Q 026274 130 FLDASIFDLNPNIILGADVFYDAS-------------------------AFDDLFATITYLLQSSPGSVFITTYHNRSGH 184 (241)
Q Consensus 130 ~~~~~~~~~~fDlIl~~dvly~~~-------------------------~~~~ll~~~~~lL~~~~~~~~~~~~~~r~~~ 184 (241)
+. . .++||+|++++++--.+ .+..++..+.+.|+ +++++++.+...+ .
T Consensus 171 ~~---~-~~~fDlIVsNPPYip~~~~~~~~~~~~~EP~~Al~~g~dGl~~~~~i~~~a~~~l~--~~g~l~le~g~~q-~ 243 (280)
T COG2890 171 EP---L-RGKFDLIVSNPPYIPAEDPELLPEVVRYEPLLALVGGGDGLEVYRRILGEAPDILK--PGGVLILEIGLTQ-G 243 (280)
T ss_pred cc---c-CCceeEEEeCCCCCCCcccccChhhhccCHHHHHccCccHHHHHHHHHHhhHHHcC--CCcEEEEEECCCc-H
Confidence 43 2 23899999988763322 35667777888887 5677776654433 3
Q ss_pred hHHHHHHHHcC-CEEEEE
Q 026274 185 HLIEFLMVKWG-LKCVKL 201 (241)
Q Consensus 185 ~~~~~~~~~~g-~~~~~i 201 (241)
..+..+..+.| |.....
T Consensus 244 ~~v~~~~~~~~~~~~v~~ 261 (280)
T COG2890 244 EAVKALFEDTGFFEIVET 261 (280)
T ss_pred HHHHHHHHhcCCceEEEE
Confidence 44566666777 443333
|
|
| >TIGR01983 UbiG ubiquinone biosynthesis O-methyltransferase | Back alignment and domain information |
|---|
Probab=99.45 E-value=4.5e-12 Score=106.10 Aligned_cols=121 Identities=17% Similarity=0.223 Sum_probs=92.1
Q ss_pred eccHHHHHHHHHhcc----CCCCCCeEEEecCCCCHHHHHHHHhCCEEEEEcCCCcHHHHHHHHHHHHHcCC-ceEEEEe
Q 026274 52 WPCSVILAEYVWQQR----YRFSGANVVELGAGTSLPGLVAAKVGSNVTLTDDSNRIEVLKNMRRVCEMNKL-NCRVMGL 126 (241)
Q Consensus 52 W~~s~~L~~~l~~~~----~~~~~~~VLElGcGtGl~sl~la~~g~~V~~tD~~~~~~~l~~~~~n~~~n~~-~~~~~~l 126 (241)
|........|+.... ...++.+|||+|||+|..+..+++.+++++++|.++ .+++.+++++..++. ++++...
T Consensus 23 ~~~~~~~~~~i~~~~~~~~~~~~~~~vLdlG~G~G~~~~~l~~~~~~v~~iD~s~--~~~~~a~~~~~~~~~~~~~~~~~ 100 (224)
T TIGR01983 23 HKMNPLRLDYIRDTIRKNKKPLFGLRVLDVGCGGGLLSEPLARLGANVTGIDASE--ENIEVAKLHAKKDPLLKIEYRCT 100 (224)
T ss_pred HHhhHHHHHHHHHHHHhcccCCCCCeEEEECCCCCHHHHHHHhcCCeEEEEeCCH--HHHHHHHHHHHHcCCCceEEEeC
Confidence 334444455555332 234688999999999999999999888999999995 699999999887776 5666666
Q ss_pred ecCCCCcCcCCCCCcEEEEcCCcCCCccHHHHHHHHHHHhhcCCCeEEEEE
Q 026274 127 TWGFLDASIFDLNPNIILGADVFYDASAFDDLFATITYLLQSSPGSVFITT 177 (241)
Q Consensus 127 ~w~~~~~~~~~~~fDlIl~~dvly~~~~~~~ll~~~~~lL~~~~~~~~~~~ 177 (241)
++.+..... ..+||+|+++.++++..+...+++.+.++|+ ++|.+++.
T Consensus 101 d~~~~~~~~-~~~~D~i~~~~~l~~~~~~~~~l~~~~~~L~--~gG~l~i~ 148 (224)
T TIGR01983 101 SVEDLAEKG-AKSFDVVTCMEVLEHVPDPQAFIRACAQLLK--PGGILFFS 148 (224)
T ss_pred CHHHhhcCC-CCCccEEEehhHHHhCCCHHHHHHHHHHhcC--CCcEEEEE
Confidence 554432221 3589999999999999999999999999998 45555554
|
This model represents an O-methyltransferase believed to act at two points in the ubiquinone biosynthetic pathway in bacteria (UbiG) and fungi (COQ3). A separate methylase (MenG/UbiE) catalyzes the single C-methylation step. The most commonly used names for genes in this family do not indicate whether this gene is an O-methyl, or C-methyl transferase. |
| >TIGR02085 meth_trns_rumB 23S rRNA (uracil-5-)-methyltransferase RumB | Back alignment and domain information |
|---|
Probab=99.45 E-value=2.2e-12 Score=116.54 Aligned_cols=134 Identities=16% Similarity=0.180 Sum_probs=101.0
Q ss_pred CCCCeEEEecCCCCHHHHHHHHhCCEEEEEcCCCcHHHHHHHHHHHHHcCC-ceEEEEeecCCCCcCcCCCCCcEEEEcC
Q 026274 69 FSGANVVELGAGTSLPGLVAAKVGSNVTLTDDSNRIEVLKNMRRVCEMNKL-NCRVMGLTWGFLDASIFDLNPNIILGAD 147 (241)
Q Consensus 69 ~~~~~VLElGcGtGl~sl~la~~g~~V~~tD~~~~~~~l~~~~~n~~~n~~-~~~~~~l~w~~~~~~~~~~~fDlIl~~d 147 (241)
..+.+|||||||+|.+++.+|..+.+|+++|+++ .+++.+++|++.|+. ++++...+..+.... ...+||+|+..+
T Consensus 232 ~~~~~vLDL~cG~G~~~l~la~~~~~v~~vE~~~--~av~~a~~N~~~~~~~~~~~~~~d~~~~~~~-~~~~~D~vi~DP 308 (374)
T TIGR02085 232 IPVTQMWDLFCGVGGFGLHCAGPDTQLTGIEIES--EAIACAQQSAQMLGLDNLSFAALDSAKFATA-QMSAPELVLVNP 308 (374)
T ss_pred cCCCEEEEccCCccHHHHHHhhcCCeEEEEECCH--HHHHHHHHHHHHcCCCcEEEEECCHHHHHHh-cCCCCCEEEECC
Confidence 3567999999999999999999888999999995 699999999999987 567777666443211 123699999866
Q ss_pred CcCCCccHHHHHHHHHHHhhcCCCeEEEEEeeccCchhHHHHHHHHcCCEEEEE--ecCCCCCCcccc
Q 026274 148 VFYDASAFDDLFATITYLLQSSPGSVFITTYHNRSGHHLIEFLMVKWGLKCVKL--VDGFSFLPHYKA 213 (241)
Q Consensus 148 vly~~~~~~~ll~~~~~lL~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~i--~~~~~~~p~~~~ 213 (241)
+ | ....+.+++.+..+ .|+.++|+++.+.........+ .||+++.+ .|+|+.++|.+.
T Consensus 309 P-r-~G~~~~~l~~l~~~---~p~~ivyvsc~p~TlaRDl~~L---~gy~l~~~~~~DmFPqT~HvE~ 368 (374)
T TIGR02085 309 P-R-RGIGKELCDYLSQM---APKFILYSSCNAQTMAKDIAEL---SGYQIERVQLFDMFPHTSHYEV 368 (374)
T ss_pred C-C-CCCcHHHHHHHHhc---CCCeEEEEEeCHHHHHHHHHHh---cCceEEEEEEeccCCCCCcEEE
Confidence 6 3 24556666666543 4788999998776655555555 58888887 888888877654
|
This family consists of RNA methyltransferases designated RumB, formerly YbjF. Members act on 23S rRNA U747 and the equivalent position in other proteobacterial species. This family is homologous to the other 23S rRNA methyltransferase RumA and to the tRNA methyltransferase TrmA. |
| >PRK08287 cobalt-precorrin-6Y C(15)-methyltransferase; Validated | Back alignment and domain information |
|---|
Probab=99.44 E-value=2.4e-11 Score=99.37 Aligned_cols=123 Identities=15% Similarity=0.108 Sum_probs=89.1
Q ss_pred CCCCCeEEEecCCCCHHHHHHHHhC--CEEEEEcCCCcHHHHHHHHHHHHHcCC-ceEEEEeecCCCCcCcCCCCCcEEE
Q 026274 68 RFSGANVVELGAGTSLPGLVAAKVG--SNVTLTDDSNRIEVLKNMRRVCEMNKL-NCRVMGLTWGFLDASIFDLNPNIIL 144 (241)
Q Consensus 68 ~~~~~~VLElGcGtGl~sl~la~~g--~~V~~tD~~~~~~~l~~~~~n~~~n~~-~~~~~~l~w~~~~~~~~~~~fDlIl 144 (241)
..++.+|||+|||+|.+++.+++.+ .+|+++|+++ ++++.+++|+..++. ++++...+.. .. ...+||+|+
T Consensus 29 ~~~~~~vLDiG~G~G~~~~~la~~~~~~~v~~vD~s~--~~~~~a~~n~~~~~~~~i~~~~~d~~---~~-~~~~~D~v~ 102 (187)
T PRK08287 29 LHRAKHLIDVGAGTGSVSIEAALQFPSLQVTAIERNP--DALRLIKENRQRFGCGNIDIIPGEAP---IE-LPGKADAIF 102 (187)
T ss_pred CCCCCEEEEECCcCCHHHHHHHHHCCCCEEEEEECCH--HHHHHHHHHHHHhCCCCeEEEecCch---hh-cCcCCCEEE
Confidence 3467899999999999999999874 4899999995 699999999988765 3555543321 11 235799999
Q ss_pred EcCCcCCCccHHHHHHHHHHHhhcCCCeEEEEEeeccCchhHHHHHHHHcCCEEEEE
Q 026274 145 GADVFYDASAFDDLFATITYLLQSSPGSVFITTYHNRSGHHLIEFLMVKWGLKCVKL 201 (241)
Q Consensus 145 ~~dvly~~~~~~~ll~~~~~lL~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~i 201 (241)
++... ..+..+++.+.++|+ +||.+++.............++++.||....+
T Consensus 103 ~~~~~---~~~~~~l~~~~~~Lk--~gG~lv~~~~~~~~~~~~~~~l~~~g~~~~~~ 154 (187)
T PRK08287 103 IGGSG---GNLTAIIDWSLAHLH--PGGRLVLTFILLENLHSALAHLEKCGVSELDC 154 (187)
T ss_pred ECCCc---cCHHHHHHHHHHhcC--CCeEEEEEEecHhhHHHHHHHHHHCCCCcceE
Confidence 87543 346788999999998 67777766533333344455678889865443
|
|
| >COG2813 RsmC 16S RNA G1207 methylase RsmC [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=99.44 E-value=9.4e-12 Score=107.47 Aligned_cols=132 Identities=20% Similarity=0.258 Sum_probs=90.2
Q ss_pred HHHHHhccCCCCCCeEEEecCCCCHHHHHHHHhCC--EEEEEcCCCcHHHHHHHHHHHHHcCCceE-EEEeecCCCCcCc
Q 026274 59 AEYVWQQRYRFSGANVVELGAGTSLPGLVAAKVGS--NVTLTDDSNRIEVLKNMRRVCEMNKLNCR-VMGLTWGFLDASI 135 (241)
Q Consensus 59 ~~~l~~~~~~~~~~~VLElGcGtGl~sl~la~~g~--~V~~tD~~~~~~~l~~~~~n~~~n~~~~~-~~~l~w~~~~~~~ 135 (241)
++.|.++.....+.+|||+|||.|.+|+.+++... +++++|+|. .+++.+++|+..|++... +.. .+..++.
T Consensus 147 S~lLl~~l~~~~~~~vlDlGCG~Gvlg~~la~~~p~~~vtmvDvn~--~Av~~ar~Nl~~N~~~~~~v~~---s~~~~~v 221 (300)
T COG2813 147 SRLLLETLPPDLGGKVLDLGCGYGVLGLVLAKKSPQAKLTLVDVNA--RAVESARKNLAANGVENTEVWA---SNLYEPV 221 (300)
T ss_pred HHHHHHhCCccCCCcEEEeCCCccHHHHHHHHhCCCCeEEEEecCH--HHHHHHHHhHHHcCCCccEEEE---ecccccc
Confidence 34444443333344999999999999999999864 899999995 699999999999998753 332 2333343
Q ss_pred CCCCCcEEEEcCCcCCCc-----cHHHHHHHHHHHhhcCCCeEEEEEeeccCchhHHHHHHHHcCCEEEEE
Q 026274 136 FDLNPNIILGADVFYDAS-----AFDDLFATITYLLQSSPGSVFITTYHNRSGHHLIEFLMVKWGLKCVKL 201 (241)
Q Consensus 136 ~~~~fDlIl~~dvly~~~-----~~~~ll~~~~~lL~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~i 201 (241)
.+ +||+|+++++++.-. ....++....+.|++ +|-+.++.... ......+.+.+| +|..+
T Consensus 222 ~~-kfd~IisNPPfh~G~~v~~~~~~~~i~~A~~~L~~-gGeL~iVan~~---l~y~~~L~~~Fg-~v~~l 286 (300)
T COG2813 222 EG-KFDLIISNPPFHAGKAVVHSLAQEIIAAAARHLKP-GGELWIVANRH---LPYEKKLKELFG-NVEVL 286 (300)
T ss_pred cc-cccEEEeCCCccCCcchhHHHHHHHHHHHHHhhcc-CCEEEEEEcCC---CChHHHHHHhcC-CEEEE
Confidence 34 899999999998732 334788899999984 33445555422 223334445555 44444
|
|
| >PRK10258 biotin biosynthesis protein BioC; Provisional | Back alignment and domain information |
|---|
Probab=99.44 E-value=3.2e-12 Score=109.16 Aligned_cols=99 Identities=16% Similarity=0.115 Sum_probs=79.1
Q ss_pred CCCeEEEecCCCCHHHHHHHHhCCEEEEEcCCCcHHHHHHHHHHHHHcCCceEEEEeecCCCCcCcCCCCCcEEEEcCCc
Q 026274 70 SGANVVELGAGTSLPGLVAAKVGSNVTLTDDSNRIEVLKNMRRVCEMNKLNCRVMGLTWGFLDASIFDLNPNIILGADVF 149 (241)
Q Consensus 70 ~~~~VLElGcGtGl~sl~la~~g~~V~~tD~~~~~~~l~~~~~n~~~n~~~~~~~~l~w~~~~~~~~~~~fDlIl~~dvl 149 (241)
.+.+|||+|||+|..+..+++.|.+|+++|+++ +|++.++++.. ...+...|+.+. +..+.+||+|+++.++
T Consensus 42 ~~~~vLDiGcG~G~~~~~l~~~~~~v~~~D~s~--~~l~~a~~~~~----~~~~~~~d~~~~--~~~~~~fD~V~s~~~l 113 (251)
T PRK10258 42 KFTHVLDAGCGPGWMSRYWRERGSQVTALDLSP--PMLAQARQKDA----ADHYLAGDIESL--PLATATFDLAWSNLAV 113 (251)
T ss_pred CCCeEEEeeCCCCHHHHHHHHcCCeEEEEECCH--HHHHHHHhhCC----CCCEEEcCcccC--cCCCCcEEEEEECchh
Confidence 467899999999999999999899999999995 69988887643 223445555442 3345689999999999
Q ss_pred CCCccHHHHHHHHHHHhhcCCCeEEEEEe
Q 026274 150 YDASAFDDLFATITYLLQSSPGSVFITTY 178 (241)
Q Consensus 150 y~~~~~~~ll~~~~~lL~~~~~~~~~~~~ 178 (241)
++..+...+++.+.++|+ |||.+++..
T Consensus 114 ~~~~d~~~~l~~~~~~Lk--~gG~l~~~~ 140 (251)
T PRK10258 114 QWCGNLSTALRELYRVVR--PGGVVAFTT 140 (251)
T ss_pred hhcCCHHHHHHHHHHHcC--CCeEEEEEe
Confidence 999999999999999998 667666553
|
|
| >TIGR02021 BchM-ChlM magnesium protoporphyrin O-methyltransferase | Back alignment and domain information |
|---|
Probab=99.43 E-value=6.9e-12 Score=104.99 Aligned_cols=100 Identities=21% Similarity=0.230 Sum_probs=78.2
Q ss_pred CCCCCeEEEecCCCCHHHHHHHHhCCEEEEEcCCCcHHHHHHHHHHHHHcCC--ceEEEEeecCCCCcCcCCCCCcEEEE
Q 026274 68 RFSGANVVELGAGTSLPGLVAAKVGSNVTLTDDSNRIEVLKNMRRVCEMNKL--NCRVMGLTWGFLDASIFDLNPNIILG 145 (241)
Q Consensus 68 ~~~~~~VLElGcGtGl~sl~la~~g~~V~~tD~~~~~~~l~~~~~n~~~n~~--~~~~~~l~w~~~~~~~~~~~fDlIl~ 145 (241)
..++.+|||+|||+|..+..+++.+.+|+++|+++ +|+..++++...++. ++.+...++.+. ..+||+|++
T Consensus 53 ~~~~~~vLDiGcG~G~~~~~la~~~~~v~gvD~s~--~~i~~a~~~~~~~~~~~~i~~~~~d~~~~-----~~~fD~ii~ 125 (219)
T TIGR02021 53 PLKGKRVLDAGCGTGLLSIELAKRGAIVKAVDISE--QMVQMARNRAQGRDVAGNVEFEVNDLLSL-----CGEFDIVVC 125 (219)
T ss_pred CCCCCEEEEEeCCCCHHHHHHHHCCCEEEEEECCH--HHHHHHHHHHHhcCCCCceEEEECChhhC-----CCCcCEEEE
Confidence 45678999999999999999999888999999995 799999999887764 566666665443 158999999
Q ss_pred cCCcCCC--ccHHHHHHHHHHHhhcCCCeEEEE
Q 026274 146 ADVFYDA--SAFDDLFATITYLLQSSPGSVFIT 176 (241)
Q Consensus 146 ~dvly~~--~~~~~ll~~~~~lL~~~~~~~~~~ 176 (241)
++++++. .....+++.+.++++ ++.++.+
T Consensus 126 ~~~l~~~~~~~~~~~l~~i~~~~~--~~~~i~~ 156 (219)
T TIGR02021 126 MDVLIHYPASDMAKALGHLASLTK--ERVIFTF 156 (219)
T ss_pred hhHHHhCCHHHHHHHHHHHHHHhC--CCEEEEE
Confidence 9999774 346677788877765 4544443
|
This model represents the S-adenosylmethionine-dependent O-methyltransferase responsible for methylation of magnesium protoporphyrin IX. This step is essentiasl for the biosynthesis of both chlorophyll and bacteriochlorophyll. This model encompasses two closely related clades, from cyanobacteria (and plants) where it is called ChlM and other photosynthetic bacteria where it is known as BchM. |
| >PLN02585 magnesium protoporphyrin IX methyltransferase | Back alignment and domain information |
|---|
Probab=99.42 E-value=8.2e-12 Score=110.04 Aligned_cols=97 Identities=18% Similarity=0.206 Sum_probs=72.1
Q ss_pred CCCCeEEEecCCCCHHHHHHHHhCCEEEEEcCCCcHHHHHHHHHHHHHc------CCceEEEEeecCCCCcCcCCCCCcE
Q 026274 69 FSGANVVELGAGTSLPGLVAAKVGSNVTLTDDSNRIEVLKNMRRVCEMN------KLNCRVMGLTWGFLDASIFDLNPNI 142 (241)
Q Consensus 69 ~~~~~VLElGcGtGl~sl~la~~g~~V~~tD~~~~~~~l~~~~~n~~~n------~~~~~~~~l~w~~~~~~~~~~~fDl 142 (241)
.++.+|||+|||+|.+++.+++.|.+|+++|+++ +|++.+++++... ...+++...|+.+ .+++||+
T Consensus 143 ~~~~~VLDlGcGtG~~a~~la~~g~~V~gvD~S~--~ml~~A~~~~~~~~~~~~~~~~~~f~~~Dl~~-----l~~~fD~ 215 (315)
T PLN02585 143 LAGVTVCDAGCGTGSLAIPLALEGAIVSASDISA--AMVAEAERRAKEALAALPPEVLPKFEANDLES-----LSGKYDT 215 (315)
T ss_pred CCCCEEEEecCCCCHHHHHHHHCCCEEEEEECCH--HHHHHHHHHHHhcccccccccceEEEEcchhh-----cCCCcCE
Confidence 4678999999999999999999999999999995 6999999988754 2345555555432 2468999
Q ss_pred EEEcCCcCCCcc--HHHHHHHHHHHhhcCCCeEEE
Q 026274 143 ILGADVFYDASA--FDDLFATITYLLQSSPGSVFI 175 (241)
Q Consensus 143 Il~~dvly~~~~--~~~ll~~~~~lL~~~~~~~~~ 175 (241)
|++.++++|.+. ...+++.+.++ .++++++
T Consensus 216 Vv~~~vL~H~p~~~~~~ll~~l~~l---~~g~liI 247 (315)
T PLN02585 216 VTCLDVLIHYPQDKADGMIAHLASL---AEKRLII 247 (315)
T ss_pred EEEcCEEEecCHHHHHHHHHHHHhh---cCCEEEE
Confidence 999999977544 33455555544 2455544
|
|
| >TIGR02752 MenG_heptapren 2-heptaprenyl-1,4-naphthoquinone methyltransferase | Back alignment and domain information |
|---|
Probab=99.42 E-value=1.5e-11 Score=103.58 Aligned_cols=104 Identities=15% Similarity=0.133 Sum_probs=81.6
Q ss_pred CCCCCeEEEecCCCCHHHHHHHHh-C--CEEEEEcCCCcHHHHHHHHHHHHHcCC-ceEEEEeecCCCCcCcCCCCCcEE
Q 026274 68 RFSGANVVELGAGTSLPGLVAAKV-G--SNVTLTDDSNRIEVLKNMRRVCEMNKL-NCRVMGLTWGFLDASIFDLNPNII 143 (241)
Q Consensus 68 ~~~~~~VLElGcGtGl~sl~la~~-g--~~V~~tD~~~~~~~l~~~~~n~~~n~~-~~~~~~l~w~~~~~~~~~~~fDlI 143 (241)
..++.+|||+|||+|..+..+++. + .+|+++|+++ ++++.+++++..++. ++.+...+..+. +..+.+||+|
T Consensus 43 ~~~~~~vLDiGcG~G~~~~~la~~~~~~~~v~gvD~s~--~~~~~a~~~~~~~~~~~v~~~~~d~~~~--~~~~~~fD~V 118 (231)
T TIGR02752 43 VQAGTSALDVCCGTADWSIALAEAVGPEGHVIGLDFSE--NMLSVGRQKVKDAGLHNVELVHGNAMEL--PFDDNSFDYV 118 (231)
T ss_pred CCCCCEEEEeCCCcCHHHHHHHHHhCCCCEEEEEECCH--HHHHHHHHHHHhcCCCceEEEEechhcC--CCCCCCccEE
Confidence 345789999999999999999875 3 4899999995 699999998876655 455555555432 2234689999
Q ss_pred EEcCCcCCCccHHHHHHHHHHHhhcCCCeEEEEE
Q 026274 144 LGADVFYDASAFDDLFATITYLLQSSPGSVFITT 177 (241)
Q Consensus 144 l~~dvly~~~~~~~ll~~~~~lL~~~~~~~~~~~ 177 (241)
+++.++.+.++...+++.+.++|+ +||.+++.
T Consensus 119 ~~~~~l~~~~~~~~~l~~~~~~Lk--~gG~l~~~ 150 (231)
T TIGR02752 119 TIGFGLRNVPDYMQVLREMYRVVK--PGGKVVCL 150 (231)
T ss_pred EEecccccCCCHHHHHHHHHHHcC--cCeEEEEE
Confidence 999999898999999999999998 56655543
|
MenG is a generic term for a methyltransferase that catalyzes the last step in menaquinone biosynthesis; the exact enzymatic activity differs for different MenG because the menaquinone differ in their prenoid side chains in different species. Members of this MenG protein family are 2-heptaprenyl-1,4-naphthoquinone methyltransferase, and are found together in operons with the two subunits of the heptaprenyl diphosphate synthase in Bacillus subtilis and related species. |
| >PRK00121 trmB tRNA (guanine-N(7)-)-methyltransferase; Reviewed | Back alignment and domain information |
|---|
Probab=99.42 E-value=1.8e-12 Score=107.55 Aligned_cols=127 Identities=15% Similarity=-0.034 Sum_probs=93.3
Q ss_pred CCCeEEEecCCCCHHHHHHHHhC--CEEEEEcCCCcHHHHHHHHHHHHHcCC-ceEEEEeec-CCCCcCcCCCCCcEEEE
Q 026274 70 SGANVVELGAGTSLPGLVAAKVG--SNVTLTDDSNRIEVLKNMRRVCEMNKL-NCRVMGLTW-GFLDASIFDLNPNIILG 145 (241)
Q Consensus 70 ~~~~VLElGcGtGl~sl~la~~g--~~V~~tD~~~~~~~l~~~~~n~~~n~~-~~~~~~l~w-~~~~~~~~~~~fDlIl~ 145 (241)
.+.+|||+|||+|..+..+++.. .+|+++|+++ ++++.+++++..++. ++.+...++ ........+.+||+|++
T Consensus 40 ~~~~VLDiGcGtG~~~~~la~~~p~~~v~gVD~s~--~~i~~a~~~~~~~~~~~v~~~~~d~~~~l~~~~~~~~~D~V~~ 117 (202)
T PRK00121 40 DAPIHLEIGFGKGEFLVEMAKANPDINFIGIEVHE--PGVGKALKKIEEEGLTNLRLLCGDAVEVLLDMFPDGSLDRIYL 117 (202)
T ss_pred CCCeEEEEccCCCHHHHHHHHHCCCccEEEEEech--HHHHHHHHHHHHcCCCCEEEEecCHHHHHHHHcCccccceEEE
Confidence 45789999999999999998863 4899999996 699999999988775 577777776 43221133468999998
Q ss_pred cCCcCCCc--------cHHHHHHHHHHHhhcCCCeEEEEEeeccCchhHHHHHHHHcCCEEEE
Q 026274 146 ADVFYDAS--------AFDDLFATITYLLQSSPGSVFITTYHNRSGHHLIEFLMVKWGLKCVK 200 (241)
Q Consensus 146 ~dvly~~~--------~~~~ll~~~~~lL~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~ 200 (241)
+-+..+.. ..+.+++.+.++|+ |+|.+++....+.........+.+.|+.+..
T Consensus 118 ~~~~p~~~~~~~~~~~~~~~~l~~i~~~Lk--pgG~l~i~~~~~~~~~~~~~~~~~~g~~~~~ 178 (202)
T PRK00121 118 NFPDPWPKKRHHKRRLVQPEFLALYARKLK--PGGEIHFATDWEGYAEYMLEVLSAEGGFLVS 178 (202)
T ss_pred ECCCCCCCccccccccCCHHHHHHHHHHcC--CCCEEEEEcCCHHHHHHHHHHHHhCcccccc
Confidence 64332111 25789999999998 6777777766555544555567788987773
|
|
| >PF02353 CMAS: Mycolic acid cyclopropane synthetase; InterPro: IPR003333 This entry represents mycolic acid cyclopropane synthases and related enzymes, including CmaA1, CmaA2 (cyclopropane mycolic acid synthase A1 and A2) and MmaA1-4 (methoxymycolic acid synthase A1-4) | Back alignment and domain information |
|---|
Probab=99.41 E-value=7.9e-12 Score=108.18 Aligned_cols=115 Identities=20% Similarity=0.218 Sum_probs=85.1
Q ss_pred cHHHHHHHHHhccCCCCCCeEEEecCCCCHHHHHHHHh-CCEEEEEcCCCcHHHHHHHHHHHHHcCCc--eEEEEeecCC
Q 026274 54 CSVILAEYVWQQRYRFSGANVVELGAGTSLPGLVAAKV-GSNVTLTDDSNRIEVLKNMRRVCEMNKLN--CRVMGLTWGF 130 (241)
Q Consensus 54 ~s~~L~~~l~~~~~~~~~~~VLElGcGtGl~sl~la~~-g~~V~~tD~~~~~~~l~~~~~n~~~n~~~--~~~~~l~w~~ 130 (241)
+.....+++.......+|.+|||||||.|-+++.+|+. |++|+++.+|+ +..+.+++.+...++. +.+...||.+
T Consensus 46 AQ~~k~~~~~~~~~l~~G~~vLDiGcGwG~~~~~~a~~~g~~v~gitlS~--~Q~~~a~~~~~~~gl~~~v~v~~~D~~~ 123 (273)
T PF02353_consen 46 AQERKLDLLCEKLGLKPGDRVLDIGCGWGGLAIYAAERYGCHVTGITLSE--EQAEYARERIREAGLEDRVEVRLQDYRD 123 (273)
T ss_dssp HHHHHHHHHHTTTT--TT-EEEEES-TTSHHHHHHHHHH--EEEEEES-H--HHHHHHHHHHHCSTSSSTEEEEES-GGG
T ss_pred HHHHHHHHHHHHhCCCCCCEEEEeCCCccHHHHHHHHHcCcEEEEEECCH--HHHHHHHHHHHhcCCCCceEEEEeeccc
Confidence 34445566666667778999999999999999999998 99999999995 6888999999888864 6666667654
Q ss_pred CCcCcCCCCCcEEEEcCCcCCC--ccHHHHHHHHHHHhhcCCCeEEEEE
Q 026274 131 LDASIFDLNPNIILGADVFYDA--SAFDDLFATITYLLQSSPGSVFITT 177 (241)
Q Consensus 131 ~~~~~~~~~fDlIl~~dvly~~--~~~~~ll~~~~~lL~~~~~~~~~~~ 177 (241)
. +.+||.|++-+++.|. .+.+.+++.+.++|+ |||.+++.
T Consensus 124 ~-----~~~fD~IvSi~~~Ehvg~~~~~~~f~~~~~~Lk--pgG~~~lq 165 (273)
T PF02353_consen 124 L-----PGKFDRIVSIEMFEHVGRKNYPAFFRKISRLLK--PGGRLVLQ 165 (273)
T ss_dssp --------S-SEEEEESEGGGTCGGGHHHHHHHHHHHSE--TTEEEEEE
T ss_pred c-----CCCCCEEEEEechhhcChhHHHHHHHHHHHhcC--CCcEEEEE
Confidence 3 2389999999999997 688999999999998 66766543
|
All are thought to be S-adenosyl-L-methionine (SAM) utilising methyltransferases []. Mycolic acid cyclopropane synthase or cyclopropane-fatty-acyl-phospholipid synthase (CFA synthase) 2.1.1.79 from EC catalyses the reaction: |
| >COG2230 Cfa Cyclopropane fatty acid synthase and related methyltransferases [Cell envelope biogenesis, outer membrane] | Back alignment and domain information |
|---|
Probab=99.41 E-value=3.5e-12 Score=109.68 Aligned_cols=109 Identities=17% Similarity=0.200 Sum_probs=92.5
Q ss_pred ccHHHHHHHHHhccCCCCCCeEEEecCCCCHHHHHHHHh-CCEEEEEcCCCcHHHHHHHHHHHHHcCCc--eEEEEeecC
Q 026274 53 PCSVILAEYVWQQRYRFSGANVVELGAGTSLPGLVAAKV-GSNVTLTDDSNRIEVLKNMRRVCEMNKLN--CRVMGLTWG 129 (241)
Q Consensus 53 ~~s~~L~~~l~~~~~~~~~~~VLElGcGtGl~sl~la~~-g~~V~~tD~~~~~~~l~~~~~n~~~n~~~--~~~~~l~w~ 129 (241)
++...-.+.+++.....+|++|||||||.|.+++.+|+. |++|+++++|+ +..+.+++.+...|+. +++.-.||.
T Consensus 55 eAQ~~k~~~~~~kl~L~~G~~lLDiGCGWG~l~~~aA~~y~v~V~GvTlS~--~Q~~~~~~r~~~~gl~~~v~v~l~d~r 132 (283)
T COG2230 55 EAQRAKLDLILEKLGLKPGMTLLDIGCGWGGLAIYAAEEYGVTVVGVTLSE--EQLAYAEKRIAARGLEDNVEVRLQDYR 132 (283)
T ss_pred HHHHHHHHHHHHhcCCCCCCEEEEeCCChhHHHHHHHHHcCCEEEEeeCCH--HHHHHHHHHHHHcCCCcccEEEecccc
Confidence 455555666777777889999999999999999999997 79999999996 6999999999888875 677777887
Q ss_pred CCCcCcCCCCCcEEEEcCCcCCCc--cHHHHHHHHHHHhhc
Q 026274 130 FLDASIFDLNPNIILGADVFYDAS--AFDDLFATITYLLQS 168 (241)
Q Consensus 130 ~~~~~~~~~~fDlIl~~dvly~~~--~~~~ll~~~~~lL~~ 168 (241)
+.. ++||-|++.+.+.|.. ..+.+++.++++|++
T Consensus 133 d~~-----e~fDrIvSvgmfEhvg~~~~~~ff~~~~~~L~~ 168 (283)
T COG2230 133 DFE-----EPFDRIVSVGMFEHVGKENYDDFFKKVYALLKP 168 (283)
T ss_pred ccc-----cccceeeehhhHHHhCcccHHHHHHHHHhhcCC
Confidence 653 3599999999999865 499999999999983
|
|
| >TIGR00536 hemK_fam HemK family putative methylases | Back alignment and domain information |
|---|
Probab=99.40 E-value=1.5e-11 Score=107.16 Aligned_cols=142 Identities=18% Similarity=0.178 Sum_probs=96.6
Q ss_pred ccHHHHHHHHHhcc-CCCCCCeEEEecCCCCHHHHHHHHhC--CEEEEEcCCCcHHHHHHHHHHHHHcCCc--eEEEEee
Q 026274 53 PCSVILAEYVWQQR-YRFSGANVVELGAGTSLPGLVAAKVG--SNVTLTDDSNRIEVLKNMRRVCEMNKLN--CRVMGLT 127 (241)
Q Consensus 53 ~~s~~L~~~l~~~~-~~~~~~~VLElGcGtGl~sl~la~~g--~~V~~tD~~~~~~~l~~~~~n~~~n~~~--~~~~~l~ 127 (241)
+.+..|.+.+.... ....+.+|||+|||+|.+++.+++.. ++|+++|+++ ++++.+++|+..++.. +.+...|
T Consensus 96 ~ete~lv~~~l~~~~~~~~~~~vLDlG~GsG~i~l~la~~~~~~~v~avDis~--~al~~a~~n~~~~~~~~~v~~~~~d 173 (284)
T TIGR00536 96 PETEELVEKALASLISQNPILHILDLGTGSGCIALALAYEFPNAEVIAVDISP--DALAVAEENAEKNQLEHRVEFIQSN 173 (284)
T ss_pred CccHHHHHHHHHHhhhcCCCCEEEEEeccHhHHHHHHHHHCCCCEEEEEECCH--HHHHHHHHHHHHcCCCCcEEEEECc
Confidence 34455555544321 11123689999999999999999874 5899999995 6999999999988874 7788777
Q ss_pred cCCCCcCcCCCCCcEEEEcCCcCCCc-------------------------cHHHHHHHHHHHhhcCCCeEEEEEeeccC
Q 026274 128 WGFLDASIFDLNPNIILGADVFYDAS-------------------------AFDDLFATITYLLQSSPGSVFITTYHNRS 182 (241)
Q Consensus 128 w~~~~~~~~~~~fDlIl~~dvly~~~-------------------------~~~~ll~~~~~lL~~~~~~~~~~~~~~r~ 182 (241)
|.+. ....+||+|+++++..... ....+++.+.++|+ +||.+++......
T Consensus 174 ~~~~---~~~~~fDlIvsNPPyi~~~~~~~~~~~~~~eP~~AL~gg~dgl~~~~~ii~~a~~~L~--~gG~l~~e~g~~q 248 (284)
T TIGR00536 174 LFEP---LAGQKIDIIVSNPPYIDEEDLADLPNVVRFEPLLALVGGDDGLNILRQIIELAPDYLK--PNGFLVCEIGNWQ 248 (284)
T ss_pred hhcc---CcCCCccEEEECCCCCCcchhhcCCcccccCcHHHhcCCCcHHHHHHHHHHHHHHhcc--CCCEEEEEECccH
Confidence 7643 2223799999975442211 35677888888987 6677777766544
Q ss_pred chhHHHHHHHHcCCEEEEE
Q 026274 183 GHHLIEFLMVKWGLKCVKL 201 (241)
Q Consensus 183 ~~~~~~~~~~~~g~~~~~i 201 (241)
.......+....||....+
T Consensus 249 ~~~~~~~~~~~~~~~~~~~ 267 (284)
T TIGR00536 249 QKSLKELLRIKFTWYDVEN 267 (284)
T ss_pred HHHHHHHHHhcCCCceeEE
Confidence 4433333333567764444
|
The gene hemK from E. coli was found to contribute to heme biosynthesis and originally suggested to be protoporphyrinogen oxidase (Medline 95189105). Functional analysis of the nearest homolog in Saccharomyces cerevisiae, YNL063w, finds it is not protoporphyrinogen oxidase and sequence analysis suggests that HemK homologs have S-adenosyl-methionine-dependent methyltransferase activity (Medline 99237242). Homologs are found, usually in a single copy, in nearly all completed genomes, but varying somewhat in apparent domain architecture. Both E. coli and H. influenzae have two members rather than one. The members from the Mycoplasmas have an additional C-terminal domain. |
| >PF01209 Ubie_methyltran: ubiE/COQ5 methyltransferase family; InterPro: IPR004033 A number of methyltransferases have been shown to share regions of similarities [] | Back alignment and domain information |
|---|
Probab=99.40 E-value=5.1e-12 Score=107.00 Aligned_cols=123 Identities=18% Similarity=0.167 Sum_probs=80.4
Q ss_pred cc-eEEeccHHHHHHHHHhccCCCCCCeEEEecCCCCHHHHHHHHh-C--CEEEEEcCCCcHHHHHHHHHHHHHcCC-ce
Q 026274 47 YG-LFVWPCSVILAEYVWQQRYRFSGANVVELGAGTSLPGLVAAKV-G--SNVTLTDDSNRIEVLKNMRRVCEMNKL-NC 121 (241)
Q Consensus 47 ~g-~~~W~~s~~L~~~l~~~~~~~~~~~VLElGcGtGl~sl~la~~-g--~~V~~tD~~~~~~~l~~~~~n~~~n~~-~~ 121 (241)
.| .+.|.. .+.+.+ ...+|.+|||+|||||.++..+++. + .+|+++|+++ +||+.+++.+...+. ++
T Consensus 29 ~g~~~~wr~--~~~~~~----~~~~g~~vLDv~~GtG~~~~~l~~~~~~~~~v~~vD~s~--~ML~~a~~k~~~~~~~~i 100 (233)
T PF01209_consen 29 FGQDRRWRR--KLIKLL----GLRPGDRVLDVACGTGDVTRELARRVGPNGKVVGVDISP--GMLEVARKKLKREGLQNI 100 (233)
T ss_dssp --------S--HHHHHH----T--S--EEEEET-TTSHHHHHHGGGSS---EEEEEES-H--HHHHHHHHHHHHTT--SE
T ss_pred CcHHHHHHH--HHHhcc----CCCCCCEEEEeCCChHHHHHHHHHHCCCccEEEEecCCH--HHHHHHHHHHHhhCCCCe
Confidence 44 356876 333443 2346779999999999999999875 3 4899999995 799999998887654 67
Q ss_pred EEEEeecCCCCcCcCCCCCcEEEEcCCcCCCccHHHHHHHHHHHhhcCCCe-EEEEEeecc
Q 026274 122 RVMGLTWGFLDASIFDLNPNIILGADVFYDASAFDDLFATITYLLQSSPGS-VFITTYHNR 181 (241)
Q Consensus 122 ~~~~l~w~~~~~~~~~~~fDlIl~~dvly~~~~~~~ll~~~~~lL~~~~~~-~~~~~~~~r 181 (241)
++...|..+. +..+++||+|.++=.+.+.++.+..++.+.++|+ ||| ++++.+...
T Consensus 101 ~~v~~da~~l--p~~d~sfD~v~~~fglrn~~d~~~~l~E~~RVLk--PGG~l~ile~~~p 157 (233)
T PF01209_consen 101 EFVQGDAEDL--PFPDNSFDAVTCSFGLRNFPDRERALREMYRVLK--PGGRLVILEFSKP 157 (233)
T ss_dssp EEEE-BTTB----S-TT-EEEEEEES-GGG-SSHHHHHHHHHHHEE--EEEEEEEEEEEB-
T ss_pred eEEEcCHHHh--cCCCCceeEEEHHhhHHhhCCHHHHHHHHHHHcC--CCeEEEEeeccCC
Confidence 7777776654 4456799999999999999999999999999999 455 445555443
|
Apart from the ubiquinone/menaquinone biosynthesis methyltransferases (for example, the C-methyltransferase from the ubiE gene of Escherichia coli), the ubiquinone biosynthesis methyltransferases (for example, the C-methyltransferase from the COQ5 gene of Saccharomyces cerevisiae) and the menaquinone biosynthesis methyltransferases (for example, the C-methyltransferase from the MENH gene of Bacillus subtilis), this family also includes methyltransferases involved in biotin and sterol biosynthesis and in phosphatidylethanolamine methylation.; GO: 0008168 methyltransferase activity; PDB: 1VL5_C. |
| >TIGR03534 RF_mod_PrmC protein-(glutamine-N5) methyltransferase, release factor-specific | Back alignment and domain information |
|---|
Probab=99.39 E-value=2.1e-11 Score=103.66 Aligned_cols=144 Identities=20% Similarity=0.220 Sum_probs=102.5
Q ss_pred EeccHHHHHHHHHhccCCCCCCeEEEecCCCCHHHHHHHHh--CCEEEEEcCCCcHHHHHHHHHHHHHcCCc-eEEEEee
Q 026274 51 VWPCSVILAEYVWQQRYRFSGANVVELGAGTSLPGLVAAKV--GSNVTLTDDSNRIEVLKNMRRVCEMNKLN-CRVMGLT 127 (241)
Q Consensus 51 ~W~~s~~L~~~l~~~~~~~~~~~VLElGcGtGl~sl~la~~--g~~V~~tD~~~~~~~l~~~~~n~~~n~~~-~~~~~l~ 127 (241)
.++.+..+.+.+..... ..+.+|||+|||+|..++.+++. +.+++++|+++ .+++.+++|+..++.. +.+...+
T Consensus 69 p~~~~~~l~~~~l~~~~-~~~~~ilDig~G~G~~~~~l~~~~~~~~v~~iD~~~--~~~~~a~~~~~~~~~~~~~~~~~d 145 (251)
T TIGR03534 69 PRPDTEELVEAALERLK-KGPLRVLDLGTGSGAIALALAKERPDARVTAVDISP--EALAVARKNAARLGLDNVTFLQSD 145 (251)
T ss_pred CCCChHHHHHHHHHhcc-cCCCeEEEEeCcHhHHHHHHHHHCCCCEEEEEECCH--HHHHHHHHHHHHcCCCeEEEEECc
Confidence 35667777777665432 24568999999999999999987 45999999995 6999999999888774 6677766
Q ss_pred cCCCCcCcCCCCCcEEEEcCCcCCCc--------------------------cHHHHHHHHHHHhhcCCCeEEEEEeecc
Q 026274 128 WGFLDASIFDLNPNIILGADVFYDAS--------------------------AFDDLFATITYLLQSSPGSVFITTYHNR 181 (241)
Q Consensus 128 w~~~~~~~~~~~fDlIl~~dvly~~~--------------------------~~~~ll~~~~~lL~~~~~~~~~~~~~~r 181 (241)
+.+. ....+||+|+++.++.... ....+++.+.++|+ +||.+++.....
T Consensus 146 ~~~~---~~~~~fD~Vi~npPy~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~i~~~~~~L~--~gG~~~~~~~~~ 220 (251)
T TIGR03534 146 WFEP---LPGGKFDLIVSNPPYIPEADIHLLDPEVRFHEPRLALFGGEDGLDFYRRIIAQAPRLLK--PGGWLLLEIGYD 220 (251)
T ss_pred hhcc---CcCCceeEEEECCCCCchhhhhhcChhhhhcCCHHHHcCCCcHHHHHHHHHHHHHHhcc--cCCEEEEEECcc
Confidence 6542 2346899999977654311 12467788889998 566777665443
Q ss_pred CchhHHHHHHHHcCCEEEEEec
Q 026274 182 SGHHLIEFLMVKWGLKCVKLVD 203 (241)
Q Consensus 182 ~~~~~~~~~~~~~g~~~~~i~~ 203 (241)
.. .....+++++||....+..
T Consensus 221 ~~-~~~~~~l~~~gf~~v~~~~ 241 (251)
T TIGR03534 221 QG-EAVRALFEAAGFADVETRK 241 (251)
T ss_pred HH-HHHHHHHHhCCCCceEEEe
Confidence 33 3345556779997666643
|
Members of this protein family are HemK (PrmC), a protein once thought to be involved in heme biosynthesis but now recognized to be a protein-glutamine methyltransferase that modifies the peptide chain release factors. All members of the seed alignment are encoded next to the release factor 1 gene (prfA) and confirmed by phylogenetic analysis. SIMBAL analysis (manuscript in prep.) shows the motif [LIV]PRx[DE]TE (in Escherichia coli, IPRPDTE) confers specificity for the release factors rather than for ribosomal protein L3. |
| >PF08242 Methyltransf_12: Methyltransferase domain; InterPro: IPR013217 Methyl transfer from the ubiquitous donor S-adenosyl-L-methionine (SAM) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals | Back alignment and domain information |
|---|
Probab=99.39 E-value=1.1e-13 Score=101.39 Aligned_cols=96 Identities=17% Similarity=0.137 Sum_probs=59.9
Q ss_pred EEecCCCCHHHHHHHHh--CCEEEEEcCCCcHHHHHHHHHHHHHcCC-ceEEEEeecCCCCcCcCCCCCcEEEEcCCcCC
Q 026274 75 VELGAGTSLPGLVAAKV--GSNVTLTDDSNRIEVLKNMRRVCEMNKL-NCRVMGLTWGFLDASIFDLNPNIILGADVFYD 151 (241)
Q Consensus 75 LElGcGtGl~sl~la~~--g~~V~~tD~~~~~~~l~~~~~n~~~n~~-~~~~~~l~w~~~~~~~~~~~fDlIl~~dvly~ 151 (241)
||+|||+|.+...+... +.+++++|+|+. |++.+++....... ......+.-.+.......++||+|+++.+++|
T Consensus 1 LdiGcG~G~~~~~l~~~~~~~~~~~~D~s~~--~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fD~V~~~~vl~~ 78 (99)
T PF08242_consen 1 LDIGCGTGRLLRALLEELPDARYTGVDISPS--MLERARERLAELGNDNFERLRFDVLDLFDYDPPESFDLVVASNVLHH 78 (99)
T ss_dssp -EESTTTS-TTTTHHHHC-EEEEEEEESSSS--TTSTTCCCHHHCT---EEEEE--SSS---CCC----SEEEEE-TTS-
T ss_pred CEeCccChHHHHHHHHhCCCCEEEEEECCHH--HHHHHHHHhhhcCCcceeEEEeecCChhhcccccccceehhhhhHhh
Confidence 79999999999888887 669999999984 88777776665543 22222222222211222258999999999999
Q ss_pred CccHHHHHHHHHHHhhcCCCeEE
Q 026274 152 ASAFDDLFATITYLLQSSPGSVF 174 (241)
Q Consensus 152 ~~~~~~ll~~~~~lL~~~~~~~~ 174 (241)
.++.+.+++.+.++|+ |||.+
T Consensus 79 l~~~~~~l~~~~~~L~--pgG~l 99 (99)
T PF08242_consen 79 LEDIEAVLRNIYRLLK--PGGIL 99 (99)
T ss_dssp -S-HHHHHHHHTTT-T--SS-EE
T ss_pred hhhHHHHHHHHHHHcC--CCCCC
Confidence 9999999999999998 55643
|
The reaction is catalyzed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. This entry represents a methyltransferase domain found in a large variety of SAM-dependent methyltransferases including, but not limited to: Hexaprenyldihydroxybenzoate methyltransferase (2.1.1.114 from EC), a mitochodrial enzyme involved in ubiquinone biosynthesis [] Fatty acid synthase (2.3.1.85 from EC), a biosynthetic enzyme catalysing the formation of long-chain fatty acids Glycine N-methyltransferase (2.1.1.20 from EC) which catalyses the SAM-dependent methylation of glycine to form sarcosine and may play a role in regulating the methylation potential of the cell [] Enniatin synthetase, involved in non-ribosomal biosynthesis of cyclohexadepsipeptidase, enniatin [] Histamine N-methyltransferase (2.1.1.8 from EC), a SAM-dependent histamine-inactivating enzyme [] A probable cobalt-precorrin-6Y C(15)-methyltransferase thought to be involved in adenosylcobalamin biosynthesis [] Structural studies show that this domain forms the Rossman-like alpha-beta fold typical of SAM-dependent methyltransferases [, , ].; PDB: 2VZ8_A 2VZ9_A. |
| >PRK00377 cbiT cobalt-precorrin-6Y C(15)-methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.39 E-value=4.4e-11 Score=98.76 Aligned_cols=127 Identities=12% Similarity=0.082 Sum_probs=88.4
Q ss_pred CCCCCCeEEEecCCCCHHHHHHHHh-C--CEEEEEcCCCcHHHHHHHHHHHHHcCC--ceEEEEeecCCCCcCcCCCCCc
Q 026274 67 YRFSGANVVELGAGTSLPGLVAAKV-G--SNVTLTDDSNRIEVLKNMRRVCEMNKL--NCRVMGLTWGFLDASIFDLNPN 141 (241)
Q Consensus 67 ~~~~~~~VLElGcGtGl~sl~la~~-g--~~V~~tD~~~~~~~l~~~~~n~~~n~~--~~~~~~l~w~~~~~~~~~~~fD 141 (241)
...++.+|||+|||+|.+++.+++. + .+|+++|+++ ++++.+++|++.+++ ++.+...+..+... ....+||
T Consensus 37 ~~~~~~~vlDlG~GtG~~s~~~a~~~~~~~~v~avD~~~--~~~~~a~~n~~~~g~~~~v~~~~~d~~~~l~-~~~~~~D 113 (198)
T PRK00377 37 RLRKGDMILDIGCGTGSVTVEASLLVGETGKVYAVDKDE--KAINLTRRNAEKFGVLNNIVLIKGEAPEILF-TINEKFD 113 (198)
T ss_pred CCCCcCEEEEeCCcCCHHHHHHHHHhCCCCEEEEEECCH--HHHHHHHHHHHHhCCCCCeEEEEechhhhHh-hcCCCCC
Confidence 4557889999999999999999875 3 4899999995 699999999998874 45665555543211 1235799
Q ss_pred EEEEcCCcCCCccHHHHHHHHHHHhhcCCCeEEEEEeeccCchhHHHHHHHHcCCEEEEE
Q 026274 142 IILGADVFYDASAFDDLFATITYLLQSSPGSVFITTYHNRSGHHLIEFLMVKWGLKCVKL 201 (241)
Q Consensus 142 lIl~~dvly~~~~~~~ll~~~~~lL~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~i 201 (241)
.|+..- ....+..+++.+.++|+ |+|.+++....-.........+++.||+...+
T Consensus 114 ~V~~~~---~~~~~~~~l~~~~~~Lk--pgG~lv~~~~~~~~~~~~~~~l~~~g~~~~~~ 168 (198)
T PRK00377 114 RIFIGG---GSEKLKEIISASWEIIK--KGGRIVIDAILLETVNNALSALENIGFNLEIT 168 (198)
T ss_pred EEEECC---CcccHHHHHHHHHHHcC--CCcEEEEEeecHHHHHHHHHHHHHcCCCeEEE
Confidence 999743 34567889999999998 56665554322222223334457889855443
|
|
| >COG2226 UbiE Methylase involved in ubiquinone/menaquinone biosynthesis [Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=99.39 E-value=7.1e-12 Score=105.82 Aligned_cols=122 Identities=19% Similarity=0.210 Sum_probs=94.1
Q ss_pred cce-EEeccHHHHHHHHHhccCCCCCCeEEEecCCCCHHHHHHHHhC--CEEEEEcCCCcHHHHHHHHHHHHHcCC-ceE
Q 026274 47 YGL-FVWPCSVILAEYVWQQRYRFSGANVVELGAGTSLPGLVAAKVG--SNVTLTDDSNRIEVLKNMRRVCEMNKL-NCR 122 (241)
Q Consensus 47 ~g~-~~W~~s~~L~~~l~~~~~~~~~~~VLElGcGtGl~sl~la~~g--~~V~~tD~~~~~~~l~~~~~n~~~n~~-~~~ 122 (241)
.|. +.|.....- .....+|.+|||+|||||-+++.+++.. ++|+++|+|+ .||+.+++.+..-+. .++
T Consensus 33 ~g~~~~Wr~~~i~------~~~~~~g~~vLDva~GTGd~a~~~~k~~g~g~v~~~D~s~--~ML~~a~~k~~~~~~~~i~ 104 (238)
T COG2226 33 FGLHRLWRRALIS------LLGIKPGDKVLDVACGTGDMALLLAKSVGTGEVVGLDISE--SMLEVAREKLKKKGVQNVE 104 (238)
T ss_pred CcchHHHHHHHHH------hhCCCCCCEEEEecCCccHHHHHHHHhcCCceEEEEECCH--HHHHHHHHHhhccCccceE
Confidence 443 577743332 2222378999999999999999999975 5999999996 699999998876443 377
Q ss_pred EEEeecCCCCcCcCCCCCcEEEEcCCcCCCccHHHHHHHHHHHhhcCCCeE-EEEEeec
Q 026274 123 VMGLTWGFLDASIFDLNPNIILGADVFYDASAFDDLFATITYLLQSSPGSV-FITTYHN 180 (241)
Q Consensus 123 ~~~l~w~~~~~~~~~~~fDlIl~~dvly~~~~~~~ll~~~~~lL~~~~~~~-~~~~~~~ 180 (241)
+...+..+. +..+.+||++.++=.+.+.++.+..++.+.|+|+ |||. +++....
T Consensus 105 fv~~dAe~L--Pf~D~sFD~vt~~fglrnv~d~~~aL~E~~RVlK--pgG~~~vle~~~ 159 (238)
T COG2226 105 FVVGDAENL--PFPDNSFDAVTISFGLRNVTDIDKALKEMYRVLK--PGGRLLVLEFSK 159 (238)
T ss_pred EEEechhhC--CCCCCccCEEEeeehhhcCCCHHHHHHHHHHhhc--CCeEEEEEEcCC
Confidence 777766654 5667899999999999999999999999999999 5554 3444433
|
|
| >smart00828 PKS_MT Methyltransferase in polyketide synthase (PKS) enzymes | Back alignment and domain information |
|---|
Probab=99.39 E-value=1.4e-11 Score=103.19 Aligned_cols=124 Identities=18% Similarity=0.115 Sum_probs=92.7
Q ss_pred CeEEEecCCCCHHHHHHHHhC--CEEEEEcCCCcHHHHHHHHHHHHHcCC--ceEEEEeecCCCCcCcCCCCCcEEEEcC
Q 026274 72 ANVVELGAGTSLPGLVAAKVG--SNVTLTDDSNRIEVLKNMRRVCEMNKL--NCRVMGLTWGFLDASIFDLNPNIILGAD 147 (241)
Q Consensus 72 ~~VLElGcGtGl~sl~la~~g--~~V~~tD~~~~~~~l~~~~~n~~~n~~--~~~~~~l~w~~~~~~~~~~~fDlIl~~d 147 (241)
++|||+|||+|..+..+++.. .+|+++|+++ ++++.+++++...+. ++++...|.... + ...+||+|++..
T Consensus 1 ~~vLDiGcG~G~~~~~la~~~~~~~v~gid~s~--~~~~~a~~~~~~~gl~~~i~~~~~d~~~~--~-~~~~fD~I~~~~ 75 (224)
T smart00828 1 KRVLDFGCGYGSDLIDLAERHPHLQLHGYTISP--EQAEVGRERIRALGLQGRIRIFYRDSAKD--P-FPDTYDLVFGFE 75 (224)
T ss_pred CeEEEECCCCCHHHHHHHHHCCCCEEEEEECCH--HHHHHHHHHHHhcCCCcceEEEecccccC--C-CCCCCCEeehHH
Confidence 479999999999999988863 5899999995 799999999887765 356666665432 1 235899999999
Q ss_pred CcCCCccHHHHHHHHHHHhhcCCCeEEEEEeecc---------------CchhHHHHHHHHcCCEEEEEe
Q 026274 148 VFYDASAFDDLFATITYLLQSSPGSVFITTYHNR---------------SGHHLIEFLMVKWGLKCVKLV 202 (241)
Q Consensus 148 vly~~~~~~~ll~~~~~lL~~~~~~~~~~~~~~r---------------~~~~~~~~~~~~~g~~~~~i~ 202 (241)
++++..+...+++.+.++|+ |||.+++..... .+......++++.||++....
T Consensus 76 ~l~~~~~~~~~l~~~~~~Lk--pgG~l~i~~~~~~~~~~~~~~~~~~~~~s~~~~~~~l~~~Gf~~~~~~ 143 (224)
T smart00828 76 VIHHIKDKMDLFSNISRHLK--DGGHLVLADFIANLLSAIEHEETTSYLVTREEWAELLARNNLRVVEGV 143 (224)
T ss_pred HHHhCCCHHHHHHHHHHHcC--CCCEEEEEEcccccCccccccccccccCCHHHHHHHHHHCCCeEEEeE
Confidence 99999999999999999998 555555432110 011223445688999998763
|
|
| >PRK11873 arsM arsenite S-adenosylmethyltransferase; Reviewed | Back alignment and domain information |
|---|
Probab=99.38 E-value=2.2e-11 Score=105.25 Aligned_cols=103 Identities=22% Similarity=0.279 Sum_probs=81.7
Q ss_pred CCCCCeEEEecCCCCHHHHHHHHh-CC--EEEEEcCCCcHHHHHHHHHHHHHcCC-ceEEEEeecCCCCcCcCCCCCcEE
Q 026274 68 RFSGANVVELGAGTSLPGLVAAKV-GS--NVTLTDDSNRIEVLKNMRRVCEMNKL-NCRVMGLTWGFLDASIFDLNPNII 143 (241)
Q Consensus 68 ~~~~~~VLElGcGtGl~sl~la~~-g~--~V~~tD~~~~~~~l~~~~~n~~~n~~-~~~~~~l~w~~~~~~~~~~~fDlI 143 (241)
..++.+|||+|||+|..++.+++. +. +|+++|+++ ++++.+++|....+. ++++...++.+. +..+.+||+|
T Consensus 75 ~~~g~~VLDiG~G~G~~~~~~a~~~g~~~~v~gvD~s~--~~l~~A~~~~~~~g~~~v~~~~~d~~~l--~~~~~~fD~V 150 (272)
T PRK11873 75 LKPGETVLDLGSGGGFDCFLAARRVGPTGKVIGVDMTP--EMLAKARANARKAGYTNVEFRLGEIEAL--PVADNSVDVI 150 (272)
T ss_pred CCCCCEEEEeCCCCCHHHHHHHHHhCCCCEEEEECCCH--HHHHHHHHHHHHcCCCCEEEEEcchhhC--CCCCCceeEE
Confidence 346789999999999988877764 54 799999995 699999999887765 456666665443 2334589999
Q ss_pred EEcCCcCCCccHHHHHHHHHHHhhcCCCeEEEE
Q 026274 144 LGADVFYDASAFDDLFATITYLLQSSPGSVFIT 176 (241)
Q Consensus 144 l~~dvly~~~~~~~ll~~~~~lL~~~~~~~~~~ 176 (241)
+++.++++.++...+++.+.++|+ |||.+++
T Consensus 151 i~~~v~~~~~d~~~~l~~~~r~Lk--pGG~l~i 181 (272)
T PRK11873 151 ISNCVINLSPDKERVFKEAFRVLK--PGGRFAI 181 (272)
T ss_pred EEcCcccCCCCHHHHHHHHHHHcC--CCcEEEE
Confidence 999999988899999999999998 5565554
|
|
| >PRK14103 trans-aconitate 2-methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.38 E-value=5.9e-12 Score=107.86 Aligned_cols=97 Identities=18% Similarity=0.149 Sum_probs=76.7
Q ss_pred CCCCCeEEEecCCCCHHHHHHHHh--CCEEEEEcCCCcHHHHHHHHHHHHHcCCceEEEEeecCCCCcCcCCCCCcEEEE
Q 026274 68 RFSGANVVELGAGTSLPGLVAAKV--GSNVTLTDDSNRIEVLKNMRRVCEMNKLNCRVMGLTWGFLDASIFDLNPNIILG 145 (241)
Q Consensus 68 ~~~~~~VLElGcGtGl~sl~la~~--g~~V~~tD~~~~~~~l~~~~~n~~~n~~~~~~~~l~w~~~~~~~~~~~fDlIl~ 145 (241)
...+.+|||+|||+|.++..+++. +.+|+++|+++ .|++.++++ + +++...|..+.. .+.+||+|++
T Consensus 27 ~~~~~~vLDlGcG~G~~~~~l~~~~p~~~v~gvD~s~--~~~~~a~~~----~--~~~~~~d~~~~~---~~~~fD~v~~ 95 (255)
T PRK14103 27 AERARRVVDLGCGPGNLTRYLARRWPGAVIEALDSSP--EMVAAARER----G--VDARTGDVRDWK---PKPDTDVVVS 95 (255)
T ss_pred CCCCCEEEEEcCCCCHHHHHHHHHCCCCEEEEEECCH--HHHHHHHhc----C--CcEEEcChhhCC---CCCCceEEEE
Confidence 346789999999999999999987 67999999995 698887652 2 455555544321 2358999999
Q ss_pred cCCcCCCccHHHHHHHHHHHhhcCCCeEEEEE
Q 026274 146 ADVFYDASAFDDLFATITYLLQSSPGSVFITT 177 (241)
Q Consensus 146 ~dvly~~~~~~~ll~~~~~lL~~~~~~~~~~~ 177 (241)
+.++++.++...+++.+.++|+ |||.+++.
T Consensus 96 ~~~l~~~~d~~~~l~~~~~~Lk--pgG~l~~~ 125 (255)
T PRK14103 96 NAALQWVPEHADLLVRWVDELA--PGSWIAVQ 125 (255)
T ss_pred ehhhhhCCCHHHHHHHHHHhCC--CCcEEEEE
Confidence 9999999999999999999998 55665553
|
|
| >PRK09489 rsmC 16S ribosomal RNA m2G1207 methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.37 E-value=8.9e-12 Score=111.12 Aligned_cols=98 Identities=21% Similarity=0.246 Sum_probs=76.6
Q ss_pred CCeEEEecCCCCHHHHHHHHhC--CEEEEEcCCCcHHHHHHHHHHHHHcCCceEEEEeecCCCCcCcCCCCCcEEEEcCC
Q 026274 71 GANVVELGAGTSLPGLVAAKVG--SNVTLTDDSNRIEVLKNMRRVCEMNKLNCRVMGLTWGFLDASIFDLNPNIILGADV 148 (241)
Q Consensus 71 ~~~VLElGcGtGl~sl~la~~g--~~V~~tD~~~~~~~l~~~~~n~~~n~~~~~~~~l~w~~~~~~~~~~~fDlIl~~dv 148 (241)
..+|||+|||+|.+++.+++.+ .+|+++|+++ .|++.+++|++.|++..++...|.. .. ..++||+|+++.+
T Consensus 197 ~g~VLDlGCG~G~ls~~la~~~p~~~v~~vDis~--~Al~~A~~nl~~n~l~~~~~~~D~~---~~-~~~~fDlIvsNPP 270 (342)
T PRK09489 197 KGKVLDVGCGAGVLSAVLARHSPKIRLTLSDVSA--AALESSRATLAANGLEGEVFASNVF---SD-IKGRFDMIISNPP 270 (342)
T ss_pred CCeEEEeccCcCHHHHHHHHhCCCCEEEEEECCH--HHHHHHHHHHHHcCCCCEEEEcccc---cc-cCCCccEEEECCC
Confidence 3479999999999999999975 3899999995 6999999999999987665544332 22 2468999999988
Q ss_pred cCC-----CccHHHHHHHHHHHhhcCCCeEEEE
Q 026274 149 FYD-----ASAFDDLFATITYLLQSSPGSVFIT 176 (241)
Q Consensus 149 ly~-----~~~~~~ll~~~~~lL~~~~~~~~~~ 176 (241)
+++ ....+.+++.+.++|+ +||.+++
T Consensus 271 FH~g~~~~~~~~~~~i~~a~~~Lk--pgG~L~i 301 (342)
T PRK09489 271 FHDGIQTSLDAAQTLIRGAVRHLN--SGGELRI 301 (342)
T ss_pred ccCCccccHHHHHHHHHHHHHhcC--cCCEEEE
Confidence 765 2356889999999998 4444433
|
|
| >PRK01683 trans-aconitate 2-methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.37 E-value=1.3e-11 Score=105.72 Aligned_cols=100 Identities=19% Similarity=0.238 Sum_probs=78.0
Q ss_pred CCCCCeEEEecCCCCHHHHHHHHh--CCEEEEEcCCCcHHHHHHHHHHHHHcCCceEEEEeecCCCCcCcCCCCCcEEEE
Q 026274 68 RFSGANVVELGAGTSLPGLVAAKV--GSNVTLTDDSNRIEVLKNMRRVCEMNKLNCRVMGLTWGFLDASIFDLNPNIILG 145 (241)
Q Consensus 68 ~~~~~~VLElGcGtGl~sl~la~~--g~~V~~tD~~~~~~~l~~~~~n~~~n~~~~~~~~l~w~~~~~~~~~~~fDlIl~ 145 (241)
..++.+|||||||+|.++..+++. +.+|+++|+++ .|++.++++.. ++.+...|..+.. .+.+||+|++
T Consensus 29 ~~~~~~vLDiGcG~G~~~~~la~~~~~~~v~gvD~s~--~~i~~a~~~~~----~~~~~~~d~~~~~---~~~~fD~v~~ 99 (258)
T PRK01683 29 LENPRYVVDLGCGPGNSTELLVERWPAARITGIDSSP--AMLAEARSRLP----DCQFVEADIASWQ---PPQALDLIFA 99 (258)
T ss_pred CcCCCEEEEEcccCCHHHHHHHHHCCCCEEEEEECCH--HHHHHHHHhCC----CCeEEECchhccC---CCCCccEEEE
Confidence 346789999999999999999886 46999999995 69998887642 3445544443321 2348999999
Q ss_pred cCCcCCCccHHHHHHHHHHHhhcCCCeEEEEEe
Q 026274 146 ADVFYDASAFDDLFATITYLLQSSPGSVFITTY 178 (241)
Q Consensus 146 ~dvly~~~~~~~ll~~~~~lL~~~~~~~~~~~~ 178 (241)
+.++++..+...+++.+.++|+ +||.+++..
T Consensus 100 ~~~l~~~~d~~~~l~~~~~~Lk--pgG~~~~~~ 130 (258)
T PRK01683 100 NASLQWLPDHLELFPRLVSLLA--PGGVLAVQM 130 (258)
T ss_pred ccChhhCCCHHHHHHHHHHhcC--CCcEEEEEC
Confidence 9999999999999999999998 566666643
|
|
| >PF08003 Methyltransf_9: Protein of unknown function (DUF1698); InterPro: IPR010017 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals | Back alignment and domain information |
|---|
Probab=99.36 E-value=3.7e-11 Score=103.84 Aligned_cols=149 Identities=15% Similarity=0.154 Sum_probs=98.3
Q ss_pred EEeccHHHHHHHHHhccCCCCCCeEEEecCCCCHHHHHHHHhCC-EEEEEcCCCcHHHHHHHHHHHHHcCCceEEEEeec
Q 026274 50 FVWPCSVILAEYVWQQRYRFSGANVVELGAGTSLPGLVAAKVGS-NVTLTDDSNRIEVLKNMRRVCEMNKLNCRVMGLTW 128 (241)
Q Consensus 50 ~~W~~s~~L~~~l~~~~~~~~~~~VLElGcGtGl~sl~la~~g~-~V~~tD~~~~~~~l~~~~~n~~~n~~~~~~~~l~w 128 (241)
.-|.|......... +-...+|++|||||||.|..+.-++..|+ .|+|+|-+.. ..-+.+-..+.-+....+..+..
T Consensus 96 tEWrSd~KW~rl~p-~l~~L~gk~VLDIGC~nGY~~frM~~~GA~~ViGiDP~~l--f~~QF~~i~~~lg~~~~~~~lpl 172 (315)
T PF08003_consen 96 TEWRSDWKWDRLLP-HLPDLKGKRVLDIGCNNGYYSFRMLGRGAKSVIGIDPSPL--FYLQFEAIKHFLGQDPPVFELPL 172 (315)
T ss_pred ccccccchHHHHHh-hhCCcCCCEEEEecCCCcHHHHHHhhcCCCEEEEECCChH--HHHHHHHHHHHhCCCccEEEcCc
Confidence 35888887766443 33468999999999999999999999999 6999999852 22111111111122222233322
Q ss_pred CCCCcCcCCCCCcEEEEcCCcCCCccHHHHHHHHHHHhhcCCCeEEEEE-------------eeccCc----------hh
Q 026274 129 GFLDASIFDLNPNIILGADVFYDASAFDDLFATITYLLQSSPGSVFITT-------------YHNRSG----------HH 185 (241)
Q Consensus 129 ~~~~~~~~~~~fDlIl~~dvly~~~~~~~ll~~~~~lL~~~~~~~~~~~-------------~~~r~~----------~~ 185 (241)
+-...+. .+.||+|++.-|+||..+.-..++.++..|++ ||.+++. ...|+. ..
T Consensus 173 gvE~Lp~-~~~FDtVF~MGVLYHrr~Pl~~L~~Lk~~L~~--gGeLvLETlvi~g~~~~~L~P~~rYa~m~nv~FiPs~~ 249 (315)
T PF08003_consen 173 GVEDLPN-LGAFDTVFSMGVLYHRRSPLDHLKQLKDSLRP--GGELVLETLVIDGDENTVLVPEDRYAKMRNVWFIPSVA 249 (315)
T ss_pred chhhccc-cCCcCEEEEeeehhccCCHHHHHHHHHHhhCC--CCEEEEEEeeecCCCceEEccCCcccCCCceEEeCCHH
Confidence 2211122 45899999999999999999999999999984 3333321 222332 23
Q ss_pred HHHHHHHHcCCEEEEEecC
Q 026274 186 LIEFLMVKWGLKCVKLVDG 204 (241)
Q Consensus 186 ~~~~~~~~~g~~~~~i~~~ 204 (241)
.+...+++.||.-.++.+.
T Consensus 250 ~L~~wl~r~gF~~v~~v~~ 268 (315)
T PF08003_consen 250 ALKNWLERAGFKDVRCVDV 268 (315)
T ss_pred HHHHHHHHcCCceEEEecC
Confidence 3455678999988887543
|
The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. This entry represents a set of bacterial AdoMet-dependent tRNA (mo5U34)-methyltransferases. These enzymes catalyse the conversion of 5-hydroxyuridine (ho5U) to 5-methoxyuridine (mo5U) at the wobble position (34) of tRNA []. The 5-methoxyuridine is subsequently converted to uridine-5-oxyacetic acid, a modified nucleoside that is apparently necessary for the efficient decoding of G-ending Pro, Ala, and Val codons in these organisms [].; GO: 0016300 tRNA (uracil) methyltransferase activity, 0002098 tRNA wobble uridine modification |
| >PF13659 Methyltransf_26: Methyltransferase domain; PDB: 3GJY_A 3LPM_B 2NP6_D 1AQI_B 2ADM_B 2IH2_A 2JG3_A 2IBS_D 2NP7_A 2IBT_A | Back alignment and domain information |
|---|
Probab=99.36 E-value=3.4e-12 Score=95.94 Aligned_cols=103 Identities=23% Similarity=0.261 Sum_probs=80.7
Q ss_pred CCeEEEecCCCCHHHHHHHHhC-CEEEEEcCCCcHHHHHHHHHHHHHcCC--ceEEEEeecCCCCcCcCCCCCcEEEEcC
Q 026274 71 GANVVELGAGTSLPGLVAAKVG-SNVTLTDDSNRIEVLKNMRRVCEMNKL--NCRVMGLTWGFLDASIFDLNPNIILGAD 147 (241)
Q Consensus 71 ~~~VLElGcGtGl~sl~la~~g-~~V~~tD~~~~~~~l~~~~~n~~~n~~--~~~~~~l~w~~~~~~~~~~~fDlIl~~d 147 (241)
|.+|||+|||+|.+++.+++.+ .+++++|+++ .+++.++.|+..++. ++++...|+.+......+.+||+|+++.
T Consensus 1 g~~vlD~~~G~G~~~~~~~~~~~~~~~gvdi~~--~~~~~a~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~D~Iv~np 78 (117)
T PF13659_consen 1 GDRVLDPGCGSGTFLLAALRRGAARVTGVDIDP--EAVELARRNLPRNGLDDRVEVIVGDARDLPEPLPDGKFDLIVTNP 78 (117)
T ss_dssp TEEEEEETSTTCHHHHHHHHHCTCEEEEEESSH--HHHHHHHHHCHHCTTTTTEEEEESHHHHHHHTCTTT-EEEEEE--
T ss_pred CCEEEEcCcchHHHHHHHHHHCCCeEEEEEECH--HHHHHHHHHHHHccCCceEEEEECchhhchhhccCceeEEEEECC
Confidence 4689999999999999999999 7999999995 799999999999876 5777777776554344567999999998
Q ss_pred CcCCC--------ccHHHHHHHHHHHhhcCCCeEEEEE
Q 026274 148 VFYDA--------SAFDDLFATITYLLQSSPGSVFITT 177 (241)
Q Consensus 148 vly~~--------~~~~~ll~~~~~lL~~~~~~~~~~~ 177 (241)
++... .....+++.+.++|+ ++|.+++.
T Consensus 79 P~~~~~~~~~~~~~~~~~~~~~~~~~L~--~gG~~~~~ 114 (117)
T PF13659_consen 79 PYGPRSGDKAALRRLYSRFLEAAARLLK--PGGVLVFI 114 (117)
T ss_dssp STTSBTT----GGCHHHHHHHHHHHHEE--EEEEEEEE
T ss_pred CCccccccchhhHHHHHHHHHHHHHHcC--CCeEEEEE
Confidence 88753 245788999999998 55655543
|
... |
| >COG4976 Predicted methyltransferase (contains TPR repeat) [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.36 E-value=6.6e-13 Score=109.71 Aligned_cols=125 Identities=23% Similarity=0.311 Sum_probs=90.9
Q ss_pred CCeEEEecCCCCHHHHHHHHhCCEEEEEcCCCcHHHHHHHHHHHHHcCCceEEEEeecCCCCcCcCCCCCcEEEEcCCcC
Q 026274 71 GANVVELGAGTSLPGLVAAKVGSNVTLTDDSNRIEVLKNMRRVCEMNKLNCRVMGLTWGFLDASIFDLNPNIILGADVFY 150 (241)
Q Consensus 71 ~~~VLElGcGtGl~sl~la~~g~~V~~tD~~~~~~~l~~~~~n~~~n~~~~~~~~l~w~~~~~~~~~~~fDlIl~~dvly 150 (241)
-+++||||||||+.|..+-.+..+.+++|+|+ .|++.+.+ .++-....+.+...+.....+++||+|.++||+-
T Consensus 126 F~~~lDLGCGTGL~G~~lR~~a~~ltGvDiS~--nMl~kA~e----Kg~YD~L~~Aea~~Fl~~~~~er~DLi~AaDVl~ 199 (287)
T COG4976 126 FRRMLDLGCGTGLTGEALRDMADRLTGVDISE--NMLAKAHE----KGLYDTLYVAEAVLFLEDLTQERFDLIVAADVLP 199 (287)
T ss_pred cceeeecccCcCcccHhHHHHHhhccCCchhH--HHHHHHHh----ccchHHHHHHHHHHHhhhccCCcccchhhhhHHH
Confidence 46899999999999999999988999999996 48876654 2321111111111122233456899999999999
Q ss_pred CCccHHHHHHHHHHHhhcCCCeEEEEEe-------------eccCc--hhHHHHHHHHcCCEEEEEec
Q 026274 151 DASAFDDLFATITYLLQSSPGSVFITTY-------------HNRSG--HHLIEFLMVKWGLKCVKLVD 203 (241)
Q Consensus 151 ~~~~~~~ll~~~~~lL~~~~~~~~~~~~-------------~~r~~--~~~~~~~~~~~g~~~~~i~~ 203 (241)
|...++.++-....+|+ +||.|.++. +.|+. ...+...++..||++..+.+
T Consensus 200 YlG~Le~~~~~aa~~L~--~gGlfaFSvE~l~~~~~f~l~ps~RyAH~~~YVr~~l~~~Gl~~i~~~~ 265 (287)
T COG4976 200 YLGALEGLFAGAAGLLA--PGGLFAFSVETLPDDGGFVLGPSQRYAHSESYVRALLAASGLEVIAIED 265 (287)
T ss_pred hhcchhhHHHHHHHhcC--CCceEEEEecccCCCCCeecchhhhhccchHHHHHHHHhcCceEEEeec
Confidence 99999999999999998 666666553 23333 33566678889999888743
|
|
| >KOG3191 consensus Predicted N6-DNA-methyltransferase [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=99.36 E-value=3.6e-11 Score=96.13 Aligned_cols=159 Identities=14% Similarity=0.139 Sum_probs=114.1
Q ss_pred ccHHHHHHHHHhccCCCC---CCeEEEecCCCCHHHHHHHHh-C--CEEEEEcCCCcHHHHHHHHHHHHHcCCceEEEEe
Q 026274 53 PCSVILAEYVWQQRYRFS---GANVVELGAGTSLPGLVAAKV-G--SNVTLTDDSNRIEVLKNMRRVCEMNKLNCRVMGL 126 (241)
Q Consensus 53 ~~s~~L~~~l~~~~~~~~---~~~VLElGcGtGl~sl~la~~-g--~~V~~tD~~~~~~~l~~~~~n~~~n~~~~~~~~l 126 (241)
+.+++|.+-|.+.....+ .+-++|||||+|.++-++++. + +.+.+||+|+ .+++...+.++.|+..+.+.+-
T Consensus 23 EDTFlLlDaLekd~~eL~~~~~~i~lEIG~GSGvvstfL~~~i~~~~~~latDiNp--~A~~~Tl~TA~~n~~~~~~V~t 100 (209)
T KOG3191|consen 23 EDTFLLLDALEKDAAELKGHNPEICLEIGCGSGVVSTFLASVIGPQALYLATDINP--EALEATLETARCNRVHIDVVRT 100 (209)
T ss_pred chhhHHHHHHHHHHHHHhhcCceeEEEecCCcchHHHHHHHhcCCCceEEEecCCH--HHHHHHHHHHHhcCCccceeeh
Confidence 456777777765433222 456999999999999999986 3 3799999995 7999999999999998777776
Q ss_pred ecCCCCcCcCCCCCcEEEEcCCcCCC---------------------ccHHHHHHHHHHHhhcCCCeEEEEEeeccCchh
Q 026274 127 TWGFLDASIFDLNPNIILGADVFYDA---------------------SAFDDLFATITYLLQSSPGSVFITTYHNRSGHH 185 (241)
Q Consensus 127 ~w~~~~~~~~~~~fDlIl~~dvly~~---------------------~~~~~ll~~~~~lL~~~~~~~~~~~~~~r~~~~ 185 (241)
|...... .++.|+++-+.++--. .....|+..+..+|+ |.|+||+-.-.++..+
T Consensus 101 dl~~~l~---~~~VDvLvfNPPYVpt~~~~i~~~~i~~a~aGG~~Gr~v~d~ll~~v~~iLS--p~Gv~Ylv~~~~N~p~ 175 (209)
T KOG3191|consen 101 DLLSGLR---NESVDVLVFNPPYVPTSDEEIGDEGIASAWAGGKDGREVTDRLLPQVPDILS--PRGVFYLVALRANKPK 175 (209)
T ss_pred hHHhhhc---cCCccEEEECCCcCcCCcccchhHHHHHHHhcCcchHHHHHHHHhhhhhhcC--cCceEEeeehhhcCHH
Confidence 6654332 3689999877654221 125667777888886 7788887766677666
Q ss_pred HHHHHHHHcCCEEEEEecCCCCCCcccccccCCCeEEEEEEe
Q 026274 186 LIEFLMVKWGLKCVKLVDGFSFLPHYKARELNGNIQLAEIVL 227 (241)
Q Consensus 186 ~~~~~~~~~g~~~~~i~~~~~~~p~~~~~~~~~~~~l~~i~~ 227 (241)
.+-.+++..||.....+.+ ........+++++|
T Consensus 176 ei~k~l~~~g~~~~~~~~R---------k~~~E~l~ilkf~r 208 (209)
T KOG3191|consen 176 EILKILEKKGYGVRIAMQR---------KAGGETLSILKFTR 208 (209)
T ss_pred HHHHHHhhcccceeEEEEE---------ecCCceEEEEEEEe
Confidence 6666888999998887554 23334556666654
|
|
| >TIGR03533 L3_gln_methyl protein-(glutamine-N5) methyltransferase, ribosomal protein L3-specific | Back alignment and domain information |
|---|
Probab=99.36 E-value=5.5e-11 Score=103.61 Aligned_cols=122 Identities=14% Similarity=0.125 Sum_probs=89.0
Q ss_pred CCCeEEEecCCCCHHHHHHHHh--CCEEEEEcCCCcHHHHHHHHHHHHHcCC--ceEEEEeecCCCCcCcCCCCCcEEEE
Q 026274 70 SGANVVELGAGTSLPGLVAAKV--GSNVTLTDDSNRIEVLKNMRRVCEMNKL--NCRVMGLTWGFLDASIFDLNPNIILG 145 (241)
Q Consensus 70 ~~~~VLElGcGtGl~sl~la~~--g~~V~~tD~~~~~~~l~~~~~n~~~n~~--~~~~~~l~w~~~~~~~~~~~fDlIl~ 145 (241)
.+.+|||+|||+|.+++.+++. +++|+++|+++ ++++.+++|+..++. ++.+...|+.+. ..+.+||+|++
T Consensus 121 ~~~~vLDlG~GsG~i~~~la~~~~~~~v~avDis~--~al~~A~~n~~~~~~~~~i~~~~~D~~~~---~~~~~fD~Iv~ 195 (284)
T TIGR03533 121 PVKRILDLCTGSGCIAIACAYAFPEAEVDAVDISP--DALAVAEINIERHGLEDRVTLIQSDLFAA---LPGRKYDLIVS 195 (284)
T ss_pred CCCEEEEEeCchhHHHHHHHHHCCCCEEEEEECCH--HHHHHHHHHHHHcCCCCcEEEEECchhhc---cCCCCccEEEE
Confidence 3568999999999999999987 45999999995 799999999999886 467777776432 22347999999
Q ss_pred cCCcCCCc-------------------------cHHHHHHHHHHHhhcCCCeEEEEEeeccCchhHHHHHHHHcCCEEEE
Q 026274 146 ADVFYDAS-------------------------AFDDLFATITYLLQSSPGSVFITTYHNRSGHHLIEFLMVKWGLKCVK 200 (241)
Q Consensus 146 ~dvly~~~-------------------------~~~~ll~~~~~lL~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~ 200 (241)
+++..... ....+++.+.++|+ +||.+++.... ....+..++...||....
T Consensus 196 NPPy~~~~~~~~l~~~~~~ep~~al~gg~dGl~~~~~il~~a~~~L~--~gG~l~~e~g~--~~~~v~~~~~~~~~~~~~ 271 (284)
T TIGR03533 196 NPPYVDAEDMADLPAEYHHEPELALASGEDGLDLVRRILAEAADHLN--ENGVLVVEVGN--SMEALEEAYPDVPFTWLE 271 (284)
T ss_pred CCCCCCccchhhCCHhhhcCHHHHhcCCCcHHHHHHHHHHHHHHhcC--CCCEEEEEECc--CHHHHHHHHHhCCCceee
Confidence 86643211 23567888888998 66777766543 223455566677776543
|
Members of this protein family methylate ribosomal protein L3 on a glutamine side chain. This family is related to HemK, a protein-glutamine methyltranferase for peptide chain release factors. |
| >PRK09328 N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.36 E-value=5.3e-11 Score=102.70 Aligned_cols=142 Identities=19% Similarity=0.196 Sum_probs=100.1
Q ss_pred eccHHHHHHHHHhccCCCCCCeEEEecCCCCHHHHHHHHhC--CEEEEEcCCCcHHHHHHHHHHHH-HcCCceEEEEeec
Q 026274 52 WPCSVILAEYVWQQRYRFSGANVVELGAGTSLPGLVAAKVG--SNVTLTDDSNRIEVLKNMRRVCE-MNKLNCRVMGLTW 128 (241)
Q Consensus 52 W~~s~~L~~~l~~~~~~~~~~~VLElGcGtGl~sl~la~~g--~~V~~tD~~~~~~~l~~~~~n~~-~n~~~~~~~~l~w 128 (241)
.+.+..+.+++.......++.+|||+|||+|.+++.+++.. .+|+++|+++ .+++.+++|+. ....++.+...++
T Consensus 90 r~~te~l~~~~~~~~~~~~~~~vLDiG~GsG~~~~~la~~~~~~~v~~iDis~--~~l~~a~~n~~~~~~~~i~~~~~d~ 167 (275)
T PRK09328 90 RPETEELVEWALEALLLKEPLRVLDLGTGSGAIALALAKERPDAEVTAVDISP--EALAVARRNAKHGLGARVEFLQGDW 167 (275)
T ss_pred CCCcHHHHHHHHHhccccCCCEEEEEcCcHHHHHHHHHHHCCCCEEEEEECCH--HHHHHHHHHHHhCCCCcEEEEEccc
Confidence 45566777777644444567799999999999999999875 5899999995 69999999988 2234577777777
Q ss_pred CCCCcCcCCCCCcEEEEcCCcCCC--------------------------ccHHHHHHHHHHHhhcCCCeEEEEEeeccC
Q 026274 129 GFLDASIFDLNPNIILGADVFYDA--------------------------SAFDDLFATITYLLQSSPGSVFITTYHNRS 182 (241)
Q Consensus 129 ~~~~~~~~~~~fDlIl~~dvly~~--------------------------~~~~~ll~~~~~lL~~~~~~~~~~~~~~r~ 182 (241)
.+.. ...+||+|+++.+.... ..+..+++.+.++|+ +||.+++......
T Consensus 168 ~~~~---~~~~fD~Iv~npPy~~~~~~~~~~~~v~~~ep~~al~~g~~g~~~~~~~~~~~~~~Lk--~gG~l~~e~g~~~ 242 (275)
T PRK09328 168 FEPL---PGGRFDLIVSNPPYIPEADIHLLQPEVRDHEPHLALFGGEDGLDFYRRIIEQAPRYLK--PGGWLLLEIGYDQ 242 (275)
T ss_pred cCcC---CCCceeEEEECCCcCCcchhhhCCchhhhcCCchhhcCCCCHHHHHHHHHHHHHHhcc--cCCEEEEEECchH
Confidence 4432 24589999987664321 124567778889998 5677776654433
Q ss_pred chhHHHHHHHHcCCEEEEE
Q 026274 183 GHHLIEFLMVKWGLKCVKL 201 (241)
Q Consensus 183 ~~~~~~~~~~~~g~~~~~i 201 (241)
. ..+..++++.||.....
T Consensus 243 ~-~~~~~~l~~~gf~~v~~ 260 (275)
T PRK09328 243 G-EAVRALLAAAGFADVET 260 (275)
T ss_pred H-HHHHHHHHhCCCceeEE
Confidence 3 34555667889874444
|
|
| >TIGR00479 rumA 23S rRNA (uracil-5-)-methyltransferase RumA | Back alignment and domain information |
|---|
Probab=99.35 E-value=1.4e-11 Score=113.30 Aligned_cols=150 Identities=19% Similarity=0.153 Sum_probs=103.8
Q ss_pred HHHHHHHHHhccCCCCCCeEEEecCCCCHHHHHHHHhCCEEEEEcCCCcHHHHHHHHHHHHHcCC-ceEEEEeecCCCCc
Q 026274 55 SVILAEYVWQQRYRFSGANVVELGAGTSLPGLVAAKVGSNVTLTDDSNRIEVLKNMRRVCEMNKL-NCRVMGLTWGFLDA 133 (241)
Q Consensus 55 s~~L~~~l~~~~~~~~~~~VLElGcGtGl~sl~la~~g~~V~~tD~~~~~~~l~~~~~n~~~n~~-~~~~~~l~w~~~~~ 133 (241)
+..+.+.+.......++.+|||+|||+|.+++.+|+.+.+|+++|+++ ++++.+++|+..|+. ++++...|+.+...
T Consensus 277 ~~~l~~~~~~~l~~~~~~~vLDl~cG~G~~sl~la~~~~~V~~vE~~~--~av~~a~~n~~~~~~~nv~~~~~d~~~~l~ 354 (431)
T TIGR00479 277 NEKLVDRALEALELQGEELVVDAYCGVGTFTLPLAKQAKSVVGIEVVP--ESVEKAQQNAELNGIANVEFLAGTLETVLP 354 (431)
T ss_pred HHHHHHHHHHHhccCCCCEEEEcCCCcCHHHHHHHHhCCEEEEEEcCH--HHHHHHHHHHHHhCCCceEEEeCCHHHHHH
Confidence 334444444433334567999999999999999999888999999995 699999999999886 57777776654221
Q ss_pred C--cCCCCCcEEEEcCCcCCCccHHHHHHHHHHHhhcCCCeEEEEEeeccCchhHHHHHHHHcCCEEEEE--ecCCCCCC
Q 026274 134 S--IFDLNPNIILGADVFYDASAFDDLFATITYLLQSSPGSVFITTYHNRSGHHLIEFLMVKWGLKCVKL--VDGFSFLP 209 (241)
Q Consensus 134 ~--~~~~~fDlIl~~dvly~~~~~~~ll~~~~~lL~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~i--~~~~~~~p 209 (241)
. ..+.+||+|+...+-. .....+++.+.+ ++ +++++|+++.+.........+ .+.||++..+ .|+|+.++
T Consensus 355 ~~~~~~~~~D~vi~dPPr~--G~~~~~l~~l~~-l~--~~~ivyvsc~p~tlard~~~l-~~~gy~~~~~~~~DmFP~T~ 428 (431)
T TIGR00479 355 KQPWAGQIPDVLLLDPPRK--GCAAEVLRTIIE-LK--PERIVYVSCNPATLARDLEFL-CKEGYGITWVQPVDMFPHTA 428 (431)
T ss_pred HHHhcCCCCCEEEECcCCC--CCCHHHHHHHHh-cC--CCEEEEEcCCHHHHHHHHHHH-HHCCeeEEEEEEeccCCCCC
Confidence 1 1134699999755532 335666666665 33 677888887654443344444 4567877776 88888887
Q ss_pred ccc
Q 026274 210 HYK 212 (241)
Q Consensus 210 ~~~ 212 (241)
|.+
T Consensus 429 HvE 431 (431)
T TIGR00479 429 HVE 431 (431)
T ss_pred CCC
Confidence 753
|
This protein family was first proposed to be RNA methyltransferases by homology to the TrmA family. The member from E. coli has now been shown to act as the 23S RNA methyltransferase for the conserved U1939. The gene is now designated rumA and was previously designated ygcA. |
| >PRK11783 rlmL 23S rRNA m(2)G2445 methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.35 E-value=2.4e-11 Score=117.76 Aligned_cols=129 Identities=22% Similarity=0.168 Sum_probs=96.4
Q ss_pred CCCCeEEEecCCCCHHHHHHHHhCC-EEEEEcCCCcHHHHHHHHHHHHHcCCc---eEEEEeecCCCCcCcCCCCCcEEE
Q 026274 69 FSGANVVELGAGTSLPGLVAAKVGS-NVTLTDDSNRIEVLKNMRRVCEMNKLN---CRVMGLTWGFLDASIFDLNPNIIL 144 (241)
Q Consensus 69 ~~~~~VLElGcGtGl~sl~la~~g~-~V~~tD~~~~~~~l~~~~~n~~~n~~~---~~~~~l~w~~~~~~~~~~~fDlIl 144 (241)
.++++|||||||||.+|+.+++.|+ +|+++|+|+ .+++.+++|++.|+.. +++...|..+.... ...+||+|+
T Consensus 537 ~~g~rVLDlf~gtG~~sl~aa~~Ga~~V~~vD~s~--~al~~a~~N~~~ng~~~~~v~~i~~D~~~~l~~-~~~~fDlIi 613 (702)
T PRK11783 537 AKGKDFLNLFAYTGTASVHAALGGAKSTTTVDMSN--TYLEWAERNFALNGLSGRQHRLIQADCLAWLKE-AREQFDLIF 613 (702)
T ss_pred cCCCeEEEcCCCCCHHHHHHHHCCCCEEEEEeCCH--HHHHHHHHHHHHhCCCccceEEEEccHHHHHHH-cCCCcCEEE
Confidence 3578999999999999999999988 699999995 6999999999999874 67777765443222 145899999
Q ss_pred EcCCcCCC-----------ccHHHHHHHHHHHhhcCCCeEEEEEeeccCchhHHHHHHHHcCCEEEEEec
Q 026274 145 GADVFYDA-----------SAFDDLFATITYLLQSSPGSVFITTYHNRSGHHLIEFLMVKWGLKCVKLVD 203 (241)
Q Consensus 145 ~~dvly~~-----------~~~~~ll~~~~~lL~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~i~~ 203 (241)
+..+.+-. .++..++..+.++|+ +||+++++...+..... ...+.+.|+.+..+..
T Consensus 614 lDPP~f~~~~~~~~~~~~~~~y~~l~~~a~~lL~--~gG~l~~~~~~~~~~~~-~~~~~~~g~~~~~i~~ 680 (702)
T PRK11783 614 IDPPTFSNSKRMEDSFDVQRDHVALIKDAKRLLR--PGGTLYFSNNKRGFKMD-EEGLAKLGLKAEEITA 680 (702)
T ss_pred ECCCCCCCCCccchhhhHHHHHHHHHHHHHHHcC--CCCEEEEEeCCccCChh-HHHHHhCCCeEEEEec
Confidence 87765532 245678888889998 56666665544433322 4455778999988843
|
|
| >PRK08317 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=99.35 E-value=2.8e-11 Score=101.48 Aligned_cols=118 Identities=16% Similarity=0.092 Sum_probs=88.5
Q ss_pred ccHHHHHHHHHhccCCCCCCeEEEecCCCCHHHHHHHHhC---CEEEEEcCCCcHHHHHHHHHHHHHcCCceEEEEeecC
Q 026274 53 PCSVILAEYVWQQRYRFSGANVVELGAGTSLPGLVAAKVG---SNVTLTDDSNRIEVLKNMRRVCEMNKLNCRVMGLTWG 129 (241)
Q Consensus 53 ~~s~~L~~~l~~~~~~~~~~~VLElGcGtGl~sl~la~~g---~~V~~tD~~~~~~~l~~~~~n~~~n~~~~~~~~l~w~ 129 (241)
|-....-+.+.......++.+|||+|||+|..+..+++.. .+|+++|+++ .+++.++++......++.+...+..
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~~vLdiG~G~G~~~~~~a~~~~~~~~v~~~d~~~--~~~~~a~~~~~~~~~~~~~~~~d~~ 79 (241)
T PRK08317 2 PDFRRYRARTFELLAVQPGDRVLDVGCGPGNDARELARRVGPEGRVVGIDRSE--AMLALAKERAAGLGPNVEFVRGDAD 79 (241)
T ss_pred chHHHHHHHHHHHcCCCCCCEEEEeCCCCCHHHHHHHHhcCCCcEEEEEeCCH--HHHHHHHHHhhCCCCceEEEecccc
Confidence 3444444555555555678899999999999999988763 4899999995 6888888874444455666666554
Q ss_pred CCCcCcCCCCCcEEEEcCCcCCCccHHHHHHHHHHHhhcCCCeEEEE
Q 026274 130 FLDASIFDLNPNIILGADVFYDASAFDDLFATITYLLQSSPGSVFIT 176 (241)
Q Consensus 130 ~~~~~~~~~~fDlIl~~dvly~~~~~~~ll~~~~~lL~~~~~~~~~~ 176 (241)
.. +..+.+||+|++..++.+..+...+++.+.++|+ +||.+++
T Consensus 80 ~~--~~~~~~~D~v~~~~~~~~~~~~~~~l~~~~~~L~--~gG~l~~ 122 (241)
T PRK08317 80 GL--PFPDGSFDAVRSDRVLQHLEDPARALAEIARVLR--PGGRVVV 122 (241)
T ss_pred cC--CCCCCCceEEEEechhhccCCHHHHHHHHHHHhc--CCcEEEE
Confidence 43 2334689999999999999999999999999998 4554443
|
|
| >PRK00216 ubiE ubiquinone/menaquinone biosynthesis methyltransferase; Reviewed | Back alignment and domain information |
|---|
Probab=99.35 E-value=8.2e-11 Score=98.91 Aligned_cols=101 Identities=21% Similarity=0.157 Sum_probs=80.6
Q ss_pred CCCeEEEecCCCCHHHHHHHHhC---CEEEEEcCCCcHHHHHHHHHHHHHcCC--ceEEEEeecCCCCcCcCCCCCcEEE
Q 026274 70 SGANVVELGAGTSLPGLVAAKVG---SNVTLTDDSNRIEVLKNMRRVCEMNKL--NCRVMGLTWGFLDASIFDLNPNIIL 144 (241)
Q Consensus 70 ~~~~VLElGcGtGl~sl~la~~g---~~V~~tD~~~~~~~l~~~~~n~~~n~~--~~~~~~l~w~~~~~~~~~~~fDlIl 144 (241)
++.+|||+|||+|..+..+++.+ .+++++|+++ .+++.+++++..++. ++.+...++.+.. ....+||+|+
T Consensus 51 ~~~~vldiG~G~G~~~~~l~~~~~~~~~v~~~D~s~--~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~--~~~~~~D~I~ 126 (239)
T PRK00216 51 PGDKVLDLACGTGDLAIALAKAVGKTGEVVGLDFSE--GMLAVGREKLRDLGLSGNVEFVQGDAEALP--FPDNSFDAVT 126 (239)
T ss_pred CCCeEEEeCCCCCHHHHHHHHHcCCCCeEEEEeCCH--HHHHHHHHhhcccccccCeEEEecccccCC--CCCCCccEEE
Confidence 56899999999999999998876 6999999996 699999998876433 4566666655432 2245899999
Q ss_pred EcCCcCCCccHHHHHHHHHHHhhcCCCeEEEE
Q 026274 145 GADVFYDASAFDDLFATITYLLQSSPGSVFIT 176 (241)
Q Consensus 145 ~~dvly~~~~~~~ll~~~~~lL~~~~~~~~~~ 176 (241)
++.++++..+...+++.+.++|+ ++|.+++
T Consensus 127 ~~~~l~~~~~~~~~l~~~~~~L~--~gG~li~ 156 (239)
T PRK00216 127 IAFGLRNVPDIDKALREMYRVLK--PGGRLVI 156 (239)
T ss_pred EecccccCCCHHHHHHHHHHhcc--CCcEEEE
Confidence 99999999999999999999998 4554443
|
|
| >PRK05031 tRNA (uracil-5-)-methyltransferase; Validated | Back alignment and domain information |
|---|
Probab=99.33 E-value=1.8e-11 Score=110.08 Aligned_cols=148 Identities=15% Similarity=0.128 Sum_probs=103.7
Q ss_pred cHHHHHHHHHhccCCCCCCeEEEecCCCCHHHHHHHHhCCEEEEEcCCCcHHHHHHHHHHHHHcCC-ceEEEEeecCCCC
Q 026274 54 CSVILAEYVWQQRYRFSGANVVELGAGTSLPGLVAAKVGSNVTLTDDSNRIEVLKNMRRVCEMNKL-NCRVMGLTWGFLD 132 (241)
Q Consensus 54 ~s~~L~~~l~~~~~~~~~~~VLElGcGtGl~sl~la~~g~~V~~tD~~~~~~~l~~~~~n~~~n~~-~~~~~~l~w~~~~ 132 (241)
.+..|.+++...... .+.+||||+||+|.+|+.+++...+|+++|+++ .+++.+++|+..|++ ++++...|..+..
T Consensus 191 ~~e~l~~~v~~~~~~-~~~~vLDl~~G~G~~sl~la~~~~~v~~vE~~~--~ai~~a~~N~~~~~~~~v~~~~~d~~~~l 267 (362)
T PRK05031 191 VNEKMLEWALDATKG-SKGDLLELYCGNGNFTLALARNFRRVLATEISK--PSVAAAQYNIAANGIDNVQIIRMSAEEFT 267 (362)
T ss_pred HHHHHHHHHHHHhhc-CCCeEEEEeccccHHHHHHHhhCCEEEEEECCH--HHHHHHHHHHHHhCCCcEEEEECCHHHHH
Confidence 355566665543221 235799999999999999998877999999995 699999999999987 5777777765432
Q ss_pred cCcC--------------CCCCcEEEEcCCcCCCccHHHHHHHHHHHhhcCCCeEEEEEeeccCchhHHHHHHHHcCCEE
Q 026274 133 ASIF--------------DLNPNIILGADVFYDASAFDDLFATITYLLQSSPGSVFITTYHNRSGHHLIEFLMVKWGLKC 198 (241)
Q Consensus 133 ~~~~--------------~~~fDlIl~~dvly~~~~~~~ll~~~~~lL~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~ 198 (241)
.... ..+||+|+.-++ + ....+.+++.+.+ ++.++|+++.+.........+.+ ||++
T Consensus 268 ~~~~~~~~~~~~~~~~~~~~~~D~v~lDPP-R-~G~~~~~l~~l~~-----~~~ivyvSC~p~tlarDl~~L~~--gY~l 338 (362)
T PRK05031 268 QAMNGVREFNRLKGIDLKSYNFSTIFVDPP-R-AGLDDETLKLVQA-----YERILYISCNPETLCENLETLSQ--THKV 338 (362)
T ss_pred HHHhhcccccccccccccCCCCCEEEECCC-C-CCCcHHHHHHHHc-----cCCEEEEEeCHHHHHHHHHHHcC--CcEE
Confidence 1110 125899998555 4 3445555555533 46788988887555455555543 8998
Q ss_pred EEE--ecCCCCCCcccc
Q 026274 199 VKL--VDGFSFLPHYKA 213 (241)
Q Consensus 199 ~~i--~~~~~~~p~~~~ 213 (241)
+.+ .|+|+.++|.+.
T Consensus 339 ~~v~~~DmFPqT~HvE~ 355 (362)
T PRK05031 339 ERFALFDQFPYTHHMEC 355 (362)
T ss_pred EEEEEcccCCCCCcEEE
Confidence 887 888888877653
|
|
| >PLN02490 MPBQ/MSBQ methyltransferase | Back alignment and domain information |
|---|
Probab=99.33 E-value=2.7e-10 Score=101.28 Aligned_cols=126 Identities=20% Similarity=0.137 Sum_probs=91.6
Q ss_pred CCCeEEEecCCCCHHHHHHHHh--CCEEEEEcCCCcHHHHHHHHHHHHHcCCceEEEEeecCCCCcCcCCCCCcEEEEcC
Q 026274 70 SGANVVELGAGTSLPGLVAAKV--GSNVTLTDDSNRIEVLKNMRRVCEMNKLNCRVMGLTWGFLDASIFDLNPNIILGAD 147 (241)
Q Consensus 70 ~~~~VLElGcGtGl~sl~la~~--g~~V~~tD~~~~~~~l~~~~~n~~~n~~~~~~~~l~w~~~~~~~~~~~fDlIl~~d 147 (241)
.+.+|||||||+|..++.+++. +.+|+++|.++ +|++.++++...++ +++...+..+. +..+.+||+|+++.
T Consensus 113 ~~~~VLDLGcGtG~~~l~La~~~~~~~VtgVD~S~--~mL~~A~~k~~~~~--i~~i~gD~e~l--p~~~~sFDvVIs~~ 186 (340)
T PLN02490 113 RNLKVVDVGGGTGFTTLGIVKHVDAKNVTILDQSP--HQLAKAKQKEPLKE--CKIIEGDAEDL--PFPTDYADRYVSAG 186 (340)
T ss_pred CCCEEEEEecCCcHHHHHHHHHCCCCEEEEEECCH--HHHHHHHHhhhccC--CeEEeccHHhC--CCCCCceeEEEEcC
Confidence 4679999999999998888875 35899999995 69999988765433 44555555432 23346899999999
Q ss_pred CcCCCccHHHHHHHHHHHhhcCCCeEEEE-Eee-c-----c---------CchhHHHHHHHHcCCEEEEEec
Q 026274 148 VFYDASAFDDLFATITYLLQSSPGSVFIT-TYH-N-----R---------SGHHLIEFLMVKWGLKCVKLVD 203 (241)
Q Consensus 148 vly~~~~~~~ll~~~~~lL~~~~~~~~~~-~~~-~-----r---------~~~~~~~~~~~~~g~~~~~i~~ 203 (241)
++++..+.+.+++.+.++|+ +||.+++ ... . + ...+....++++.||+...+.+
T Consensus 187 ~L~~~~d~~~~L~e~~rvLk--PGG~LvIi~~~~p~~~~~r~~~~~~~~~~t~eEl~~lL~~aGF~~V~i~~ 256 (340)
T PLN02490 187 SIEYWPDPQRGIKEAYRVLK--IGGKACLIGPVHPTFWLSRFFADVWMLFPKEEEYIEWFTKAGFKDVKLKR 256 (340)
T ss_pred hhhhCCCHHHHHHHHHHhcC--CCcEEEEEEecCcchhHHHHhhhhhccCCCHHHHHHHHHHCCCeEEEEEE
Confidence 99998899999999999998 4555443 211 1 0 1123344567889999888743
|
|
| >PRK10909 rsmD 16S rRNA m(2)G966-methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.31 E-value=3.2e-11 Score=99.72 Aligned_cols=108 Identities=15% Similarity=0.103 Sum_probs=80.8
Q ss_pred CCCCeEEEecCCCCHHHHHHHHhC-CEEEEEcCCCcHHHHHHHHHHHHHcCC-ceEEEEeecCCCCcCcCCCCCcEEEEc
Q 026274 69 FSGANVVELGAGTSLPGLVAAKVG-SNVTLTDDSNRIEVLKNMRRVCEMNKL-NCRVMGLTWGFLDASIFDLNPNIILGA 146 (241)
Q Consensus 69 ~~~~~VLElGcGtGl~sl~la~~g-~~V~~tD~~~~~~~l~~~~~n~~~n~~-~~~~~~l~w~~~~~~~~~~~fDlIl~~ 146 (241)
..+.+|||||||+|.+|+.++..+ ++|+++|.++ ++++.+++|++.++. ++++...|+.+.... ...+||+|++.
T Consensus 52 ~~~~~vLDl~~GsG~l~l~~lsr~a~~V~~vE~~~--~a~~~a~~Nl~~~~~~~v~~~~~D~~~~l~~-~~~~fDlV~~D 128 (199)
T PRK10909 52 IVDARCLDCFAGSGALGLEALSRYAAGATLLEMDR--AVAQQLIKNLATLKAGNARVVNTNALSFLAQ-PGTPHNVVFVD 128 (199)
T ss_pred cCCCEEEEcCCCccHHHHHHHHcCCCEEEEEECCH--HHHHHHHHHHHHhCCCcEEEEEchHHHHHhh-cCCCceEEEEC
Confidence 456799999999999999755555 4999999995 799999999998886 467777666543211 23469999977
Q ss_pred CCcCCCccHHHHHHHHHHH--hhcCCCeEEEEEeeccC
Q 026274 147 DVFYDASAFDDLFATITYL--LQSSPGSVFITTYHNRS 182 (241)
Q Consensus 147 dvly~~~~~~~ll~~~~~l--L~~~~~~~~~~~~~~r~ 182 (241)
++ |.....+.+++.+... |+ +++++++.+..+.
T Consensus 129 PP-y~~g~~~~~l~~l~~~~~l~--~~~iv~ve~~~~~ 163 (199)
T PRK10909 129 PP-FRKGLLEETINLLEDNGWLA--DEALIYVESEVEN 163 (199)
T ss_pred CC-CCCChHHHHHHHHHHCCCcC--CCcEEEEEecCCC
Confidence 76 6666677777777663 43 6889999876643
|
|
| >PRK01544 bifunctional N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase/tRNA (m7G46) methyltransferase; Reviewed | Back alignment and domain information |
|---|
Probab=99.31 E-value=9e-11 Score=109.81 Aligned_cols=124 Identities=15% Similarity=0.179 Sum_probs=89.6
Q ss_pred CCeEEEecCCCCHHHHHHHHh--CCEEEEEcCCCcHHHHHHHHHHHHHcCC--ceEEEEeecCCCCcCcCCCCCcEEEEc
Q 026274 71 GANVVELGAGTSLPGLVAAKV--GSNVTLTDDSNRIEVLKNMRRVCEMNKL--NCRVMGLTWGFLDASIFDLNPNIILGA 146 (241)
Q Consensus 71 ~~~VLElGcGtGl~sl~la~~--g~~V~~tD~~~~~~~l~~~~~n~~~n~~--~~~~~~l~w~~~~~~~~~~~fDlIl~~ 146 (241)
+.+|||+|||+|.+++.+++. +++|+++|+|+ ++++.+++|+..+++ ++.+...+|.+. ....+||+|+++
T Consensus 139 ~~~VLDlG~GsG~iai~la~~~p~~~v~avDis~--~al~~A~~N~~~~~l~~~v~~~~~D~~~~---~~~~~fDlIvsN 213 (506)
T PRK01544 139 FLNILELGTGSGCIAISLLCELPNANVIATDISL--DAIEVAKSNAIKYEVTDRIQIIHSNWFEN---IEKQKFDFIVSN 213 (506)
T ss_pred CCEEEEccCchhHHHHHHHHHCCCCeEEEEECCH--HHHHHHHHHHHHcCCccceeeeecchhhh---CcCCCccEEEEC
Confidence 468999999999999998875 46999999995 699999999998876 466676666432 223579999997
Q ss_pred CCcCCCc--------------------------cHHHHHHHHHHHhhcCCCeEEEEEeeccCchhHHHHHHHHcCCEEEE
Q 026274 147 DVFYDAS--------------------------AFDDLFATITYLLQSSPGSVFITTYHNRSGHHLIEFLMVKWGLKCVK 200 (241)
Q Consensus 147 dvly~~~--------------------------~~~~ll~~~~~lL~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~ 200 (241)
.+..... .+..+++.+.++|+ ++|.+++..... ....+..++.+.||....
T Consensus 214 PPYi~~~~~~~l~~~v~~~EP~~AL~gg~dGl~~~~~il~~a~~~L~--~gG~l~lEig~~-q~~~v~~~~~~~g~~~~~ 290 (506)
T PRK01544 214 PPYISHSEKSEMAIETINYEPSIALFAEEDGLQAYFIIAENAKQFLK--PNGKIILEIGFK-QEEAVTQIFLDHGYNIES 290 (506)
T ss_pred CCCCCchhhhhcCchhhccCcHHHhcCCccHHHHHHHHHHHHHHhcc--CCCEEEEEECCc-hHHHHHHHHHhcCCCceE
Confidence 6543211 24456777888887 667777765443 334455566778988766
Q ss_pred Ee
Q 026274 201 LV 202 (241)
Q Consensus 201 i~ 202 (241)
+.
T Consensus 291 ~~ 292 (506)
T PRK01544 291 VY 292 (506)
T ss_pred EE
Confidence 53
|
|
| >TIGR02469 CbiT precorrin-6Y C5,15-methyltransferase (decarboxylating), CbiT subunit | Back alignment and domain information |
|---|
Probab=99.31 E-value=1.5e-10 Score=87.39 Aligned_cols=109 Identities=15% Similarity=0.118 Sum_probs=78.3
Q ss_pred HHhccCCCCCCeEEEecCCCCHHHHHHHHh--CCEEEEEcCCCcHHHHHHHHHHHHHcCC-ceEEEEeecCCCCcCcCCC
Q 026274 62 VWQQRYRFSGANVVELGAGTSLPGLVAAKV--GSNVTLTDDSNRIEVLKNMRRVCEMNKL-NCRVMGLTWGFLDASIFDL 138 (241)
Q Consensus 62 l~~~~~~~~~~~VLElGcGtGl~sl~la~~--g~~V~~tD~~~~~~~l~~~~~n~~~n~~-~~~~~~l~w~~~~~~~~~~ 138 (241)
+.......++.+|||+|||+|..+..+++. +.+|+++|+++ .+++.+++|++.++. ++.+...+..... +....
T Consensus 11 ~~~~~~~~~~~~vldlG~G~G~~~~~l~~~~~~~~v~~vD~s~--~~~~~a~~~~~~~~~~~~~~~~~~~~~~~-~~~~~ 87 (124)
T TIGR02469 11 TLSKLRLRPGDVLWDIGAGSGSITIEAARLVPNGRVYAIERNP--EALRLIERNARRFGVSNIVIVEGDAPEAL-EDSLP 87 (124)
T ss_pred HHHHcCCCCCCEEEEeCCCCCHHHHHHHHHCCCceEEEEcCCH--HHHHHHHHHHHHhCCCceEEEeccccccC-hhhcC
Confidence 333333445779999999999999999986 34899999996 699999999887765 3555544433211 11234
Q ss_pred CCcEEEEcCCcCCCccHHHHHHHHHHHhhcCCCeEEEEEe
Q 026274 139 NPNIILGADVFYDASAFDDLFATITYLLQSSPGSVFITTY 178 (241)
Q Consensus 139 ~fDlIl~~dvly~~~~~~~ll~~~~~lL~~~~~~~~~~~~ 178 (241)
+||+|++.... .....+++.+.++|+ ++|.+++..
T Consensus 88 ~~D~v~~~~~~---~~~~~~l~~~~~~Lk--~gG~li~~~ 122 (124)
T TIGR02469 88 EPDRVFIGGSG---GLLQEILEAIWRRLR--PGGRIVLNA 122 (124)
T ss_pred CCCEEEECCcc---hhHHHHHHHHHHHcC--CCCEEEEEe
Confidence 89999986543 345789999999998 667776653
|
This model recognizes the CbiT methylase which is responsible, in part (along with CbiE), for methylating precorrin-6y (or cobalt-precorrin-6y) at both the 5 and 15 positions as well as the concomitant decarbozylation at C-12. In many organisms, this protein is fused to the CbiE subunit. The fused protein, when found in organisms catalyzing the oxidative version of the cobalamin biosynthesis pathway, is called CobL. |
| >TIGR03587 Pse_Me-ase pseudaminic acid biosynthesis-associated methylase | Back alignment and domain information |
|---|
Probab=99.30 E-value=5.2e-11 Score=98.92 Aligned_cols=98 Identities=11% Similarity=0.089 Sum_probs=69.8
Q ss_pred CCCCeEEEecCCCCHHHHHHHHh--CCEEEEEcCCCcHHHHHHHHHHHHHcCCceEEEEeecCCCCcCcCCCCCcEEEEc
Q 026274 69 FSGANVVELGAGTSLPGLVAAKV--GSNVTLTDDSNRIEVLKNMRRVCEMNKLNCRVMGLTWGFLDASIFDLNPNIILGA 146 (241)
Q Consensus 69 ~~~~~VLElGcGtGl~sl~la~~--g~~V~~tD~~~~~~~l~~~~~n~~~n~~~~~~~~l~w~~~~~~~~~~~fDlIl~~ 146 (241)
.++.+|||+|||+|..+..+++. +.+++++|+|+ +|++.++++.. .+.+...+..+ +..+.+||+|+++
T Consensus 42 ~~~~~VLDiGCG~G~~~~~L~~~~~~~~v~giDiS~--~~l~~A~~~~~----~~~~~~~d~~~---~~~~~sfD~V~~~ 112 (204)
T TIGR03587 42 PKIASILELGANIGMNLAALKRLLPFKHIYGVEINE--YAVEKAKAYLP----NINIIQGSLFD---PFKDNFFDLVLTK 112 (204)
T ss_pred CCCCcEEEEecCCCHHHHHHHHhCCCCeEEEEECCH--HHHHHHHhhCC----CCcEEEeeccC---CCCCCCEEEEEEC
Confidence 35678999999999999999886 56999999995 69998887642 23444555443 3345689999999
Q ss_pred CCcCCCc--cHHHHHHHHHHHhhcCCCeEEEEEe
Q 026274 147 DVFYDAS--AFDDLFATITYLLQSSPGSVFITTY 178 (241)
Q Consensus 147 dvly~~~--~~~~ll~~~~~lL~~~~~~~~~~~~ 178 (241)
.+++|.. ....+++.+.+++ ++.+++..+
T Consensus 113 ~vL~hl~p~~~~~~l~el~r~~---~~~v~i~e~ 143 (204)
T TIGR03587 113 GVLIHINPDNLPTAYRELYRCS---NRYILIAEY 143 (204)
T ss_pred ChhhhCCHHHHHHHHHHHHhhc---CcEEEEEEe
Confidence 9998864 3445555555553 455555543
|
Members of this small clade are methyltransferases of the pfam08241 family and are observed within operons for the biosynthesis of pseudaminic acid, a component of exopolysaccharide and flagellin glycosyl modifications. Notable among these genomes is Pseudomonas fluorescens PfO-1. Possibly one of the two hydroxyl groups of pseudaminic acid, at positions 4 and 8 is converted to a methoxy group by this enzyme |
| >PLN02672 methionine S-methyltransferase | Back alignment and domain information |
|---|
Probab=99.30 E-value=7.5e-11 Score=117.41 Aligned_cols=147 Identities=18% Similarity=0.117 Sum_probs=106.9
Q ss_pred ccHHHHHHHHHhccC-CCCCCeEEEecCCCCHHHHHHHHhC--CEEEEEcCCCcHHHHHHHHHHHHHcCC----------
Q 026274 53 PCSVILAEYVWQQRY-RFSGANVVELGAGTSLPGLVAAKVG--SNVTLTDDSNRIEVLKNMRRVCEMNKL---------- 119 (241)
Q Consensus 53 ~~s~~L~~~l~~~~~-~~~~~~VLElGcGtGl~sl~la~~g--~~V~~tD~~~~~~~l~~~~~n~~~n~~---------- 119 (241)
+.+..|.+.+...+. .+++++|||||||+|.+++.+++.. ++|+++|+++ ++++.+++|+..|++
T Consensus 100 peTE~lve~L~~~~~~~~~~~~VLDlG~GSG~Iai~La~~~~~~~v~avDis~--~Al~~A~~Na~~n~l~~~~~~~~~~ 177 (1082)
T PLN02672 100 DWSFTFYEGLNRHPDSIFRDKTVAELGCGNGWISIAIAEKWLPSKVYGLDINP--RAVKVAWINLYLNALDDDGLPVYDG 177 (1082)
T ss_pred hhHHHHHHHHHhcccccCCCCEEEEEecchHHHHHHHHHHCCCCEEEEEECCH--HHHHHHHHHHHHcCccccccccccc
Confidence 667777777654432 2467799999999999999999874 4899999995 799999999998753
Q ss_pred -------ceEEEEeecCCCCcCcCCCCCcEEEEcCCcCCCc--------------------------------------c
Q 026274 120 -------NCRVMGLTWGFLDASIFDLNPNIILGADVFYDAS--------------------------------------A 154 (241)
Q Consensus 120 -------~~~~~~l~w~~~~~~~~~~~fDlIl~~dvly~~~--------------------------------------~ 154 (241)
++++...||.+.... ...+||+|+++.+.--.. .
T Consensus 178 ~~~~l~~rV~f~~sDl~~~~~~-~~~~fDlIVSNPPYI~~~e~~~l~~eV~~~ep~~~~~~~~p~~AL~g~~~g~dGL~~ 256 (1082)
T PLN02672 178 EGKTLLDRVEFYESDLLGYCRD-NNIELDRIVGCIPQILNPNPEAMSKLVTENASEEFLYSLSNYCALQGFVEDQFGLGL 256 (1082)
T ss_pred ccccccccEEEEECchhhhccc-cCCceEEEEECCCcCCCcchhhcChhhhhccccccccccCccccccCCCCCCcHHHH
Confidence 367777777654311 112699999987742111 1
Q ss_pred HHHHHHHHHHHhhcCCCeEEEEEeeccCchhHHHHHHHHcCCEEEEEecC
Q 026274 155 FDDLFATITYLLQSSPGSVFITTYHNRSGHHLIEFLMVKWGLKCVKLVDG 204 (241)
Q Consensus 155 ~~~ll~~~~~lL~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~i~~~ 204 (241)
++.++....++|+ ++|.+++....+........++++.||....++..
T Consensus 257 yr~i~~~a~~~L~--pgG~l~lEiG~~q~~~v~~~l~~~~gf~~~~~~~~ 304 (1082)
T PLN02672 257 IARAVEEGISVIK--PMGIMIFNMGGRPGQAVCERLFERRGFRITKLWQT 304 (1082)
T ss_pred HHHHHHHHHHhcc--CCCEEEEEECccHHHHHHHHHHHHCCCCeeEEeee
Confidence 2566777778887 67888888777766555435777899999888553
|
|
| >TIGR02072 BioC biotin biosynthesis protein BioC | Back alignment and domain information |
|---|
Probab=99.30 E-value=7.5e-11 Score=99.00 Aligned_cols=100 Identities=17% Similarity=0.186 Sum_probs=78.5
Q ss_pred CCCCeEEEecCCCCHHHHHHHHhCC--EEEEEcCCCcHHHHHHHHHHHHHcCCceEEEEeecCCCCcCcCCCCCcEEEEc
Q 026274 69 FSGANVVELGAGTSLPGLVAAKVGS--NVTLTDDSNRIEVLKNMRRVCEMNKLNCRVMGLTWGFLDASIFDLNPNIILGA 146 (241)
Q Consensus 69 ~~~~~VLElGcGtGl~sl~la~~g~--~V~~tD~~~~~~~l~~~~~n~~~n~~~~~~~~l~w~~~~~~~~~~~fDlIl~~ 146 (241)
.++.+|||+|||+|..+..+++.+. +++++|+++ ++++.++.+.. .++.+...+..+. +..+.+||+|+++
T Consensus 33 ~~~~~vLDlG~G~G~~~~~l~~~~~~~~~~~~D~~~--~~~~~~~~~~~---~~~~~~~~d~~~~--~~~~~~fD~vi~~ 105 (240)
T TIGR02072 33 FIPASVLDIGCGTGYLTRALLKRFPQAEFIALDISA--GMLAQAKTKLS---ENVQFICGDAEKL--PLEDSSFDLIVSN 105 (240)
T ss_pred CCCCeEEEECCCccHHHHHHHHhCCCCcEEEEeChH--HHHHHHHHhcC---CCCeEEecchhhC--CCCCCceeEEEEh
Confidence 4457899999999999999999864 689999995 68877776554 2455555665543 2234689999999
Q ss_pred CCcCCCccHHHHHHHHHHHhhcCCCeEEEEE
Q 026274 147 DVFYDASAFDDLFATITYLLQSSPGSVFITT 177 (241)
Q Consensus 147 dvly~~~~~~~ll~~~~~lL~~~~~~~~~~~ 177 (241)
.++++..+...+++.+.++|+ ++|.+++.
T Consensus 106 ~~l~~~~~~~~~l~~~~~~L~--~~G~l~~~ 134 (240)
T TIGR02072 106 LALQWCDDLSQALSELARVLK--PGGLLAFS 134 (240)
T ss_pred hhhhhccCHHHHHHHHHHHcC--CCcEEEEE
Confidence 999999999999999999998 56666654
|
This enzyme, which is found in biotin biosynthetic gene clusters in proteobacteria, firmicutes, green-sulfur bacteria, fusobacterium and bacteroides, is believed to carry out an enzymatic step prior to the formation of pimeloyl-CoA (although attribution of this annotation is not traceable). The enzyme appears related to methyltransferases by homology. |
| >PRK11705 cyclopropane fatty acyl phospholipid synthase; Provisional | Back alignment and domain information |
|---|
Probab=99.30 E-value=4e-11 Score=108.59 Aligned_cols=106 Identities=19% Similarity=0.239 Sum_probs=81.5
Q ss_pred HHHhccCCCCCCeEEEecCCCCHHHHHHHHh-CCEEEEEcCCCcHHHHHHHHHHHHHcCCceEEEEeecCCCCcCcCCCC
Q 026274 61 YVWQQRYRFSGANVVELGAGTSLPGLVAAKV-GSNVTLTDDSNRIEVLKNMRRVCEMNKLNCRVMGLTWGFLDASIFDLN 139 (241)
Q Consensus 61 ~l~~~~~~~~~~~VLElGcGtGl~sl~la~~-g~~V~~tD~~~~~~~l~~~~~n~~~n~~~~~~~~l~w~~~~~~~~~~~ 139 (241)
++.+.....++.+|||+|||+|.+++.+++. |++|+++|+++ ++++.+++++. +..+++...++.+. +++
T Consensus 158 ~l~~~l~l~~g~rVLDIGcG~G~~a~~la~~~g~~V~giDlS~--~~l~~A~~~~~--~l~v~~~~~D~~~l-----~~~ 228 (383)
T PRK11705 158 LICRKLQLKPGMRVLDIGCGWGGLARYAAEHYGVSVVGVTISA--EQQKLAQERCA--GLPVEIRLQDYRDL-----NGQ 228 (383)
T ss_pred HHHHHhCCCCCCEEEEeCCCccHHHHHHHHHCCCEEEEEeCCH--HHHHHHHHHhc--cCeEEEEECchhhc-----CCC
Confidence 3444444457889999999999999999875 78999999995 79999998874 44556655555432 358
Q ss_pred CcEEEEcCCcCCC--ccHHHHHHHHHHHhhcCCCeEEEEE
Q 026274 140 PNIILGADVFYDA--SAFDDLFATITYLLQSSPGSVFITT 177 (241)
Q Consensus 140 fDlIl~~dvly~~--~~~~~ll~~~~~lL~~~~~~~~~~~ 177 (241)
||.|++..++++. .+.+.+++.+.++|+ |||.+++.
T Consensus 229 fD~Ivs~~~~ehvg~~~~~~~l~~i~r~Lk--pGG~lvl~ 266 (383)
T PRK11705 229 FDRIVSVGMFEHVGPKNYRTYFEVVRRCLK--PDGLFLLH 266 (383)
T ss_pred CCEEEEeCchhhCChHHHHHHHHHHHHHcC--CCcEEEEE
Confidence 9999999999886 456889999999998 55655543
|
|
| >PRK07580 Mg-protoporphyrin IX methyl transferase; Validated | Back alignment and domain information |
|---|
Probab=99.30 E-value=6.3e-11 Score=99.45 Aligned_cols=91 Identities=16% Similarity=0.188 Sum_probs=71.3
Q ss_pred CCCCeEEEecCCCCHHHHHHHHhCCEEEEEcCCCcHHHHHHHHHHHHHcCC--ceEEEEeecCCCCcCcCCCCCcEEEEc
Q 026274 69 FSGANVVELGAGTSLPGLVAAKVGSNVTLTDDSNRIEVLKNMRRVCEMNKL--NCRVMGLTWGFLDASIFDLNPNIILGA 146 (241)
Q Consensus 69 ~~~~~VLElGcGtGl~sl~la~~g~~V~~tD~~~~~~~l~~~~~n~~~n~~--~~~~~~l~w~~~~~~~~~~~fDlIl~~ 146 (241)
.++.+|||+|||+|..+..+++.+.+|+++|+++ ++++.++++....+. .+.+...++.. .+.+||+|++.
T Consensus 62 ~~~~~vLDvGcG~G~~~~~l~~~~~~v~~~D~s~--~~i~~a~~~~~~~~~~~~i~~~~~d~~~-----~~~~fD~v~~~ 134 (230)
T PRK07580 62 LTGLRILDAGCGVGSLSIPLARRGAKVVASDISP--QMVEEARERAPEAGLAGNITFEVGDLES-----LLGRFDTVVCL 134 (230)
T ss_pred CCCCEEEEEeCCCCHHHHHHHHcCCEEEEEECCH--HHHHHHHHHHHhcCCccCcEEEEcCchh-----ccCCcCEEEEc
Confidence 4567999999999999999999999999999995 699999998877665 56666555322 24579999999
Q ss_pred CCcCCC--ccHHHHHHHHHHHh
Q 026274 147 DVFYDA--SAFDDLFATITYLL 166 (241)
Q Consensus 147 dvly~~--~~~~~ll~~~~~lL 166 (241)
+++++. +....+++.+.+++
T Consensus 135 ~~l~~~~~~~~~~~l~~l~~~~ 156 (230)
T PRK07580 135 DVLIHYPQEDAARMLAHLASLT 156 (230)
T ss_pred chhhcCCHHHHHHHHHHHHhhc
Confidence 999663 35556667776664
|
|
| >PRK11805 N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.28 E-value=2.6e-10 Score=100.43 Aligned_cols=120 Identities=14% Similarity=0.137 Sum_probs=86.4
Q ss_pred CeEEEecCCCCHHHHHHHHh--CCEEEEEcCCCcHHHHHHHHHHHHHcCC--ceEEEEeecCCCCcCcCCCCCcEEEEcC
Q 026274 72 ANVVELGAGTSLPGLVAAKV--GSNVTLTDDSNRIEVLKNMRRVCEMNKL--NCRVMGLTWGFLDASIFDLNPNIILGAD 147 (241)
Q Consensus 72 ~~VLElGcGtGl~sl~la~~--g~~V~~tD~~~~~~~l~~~~~n~~~n~~--~~~~~~l~w~~~~~~~~~~~fDlIl~~d 147 (241)
.+|||+|||+|.+++.+++. +++|+++|+++ .+++.+++|++.++. ++.+...|+.+. ..+.+||+|+++.
T Consensus 135 ~~VLDlG~GsG~iai~la~~~p~~~V~avDis~--~al~~A~~n~~~~~l~~~i~~~~~D~~~~---l~~~~fDlIvsNP 209 (307)
T PRK11805 135 TRILDLCTGSGCIAIACAYAFPDAEVDAVDISP--DALAVAEINIERHGLEDRVTLIESDLFAA---LPGRRYDLIVSNP 209 (307)
T ss_pred CEEEEEechhhHHHHHHHHHCCCCEEEEEeCCH--HHHHHHHHHHHHhCCCCcEEEEECchhhh---CCCCCccEEEECC
Confidence 68999999999999999987 45999999995 799999999998886 467777776432 2234799999986
Q ss_pred CcCCC-------------------------ccHHHHHHHHHHHhhcCCCeEEEEEeeccCchhHHHHHHHHcCCEEEE
Q 026274 148 VFYDA-------------------------SAFDDLFATITYLLQSSPGSVFITTYHNRSGHHLIEFLMVKWGLKCVK 200 (241)
Q Consensus 148 vly~~-------------------------~~~~~ll~~~~~lL~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~ 200 (241)
+.... .....+++.+.++|+ +||.+++..... ...+..++...|+....
T Consensus 210 Pyi~~~~~~~l~~~~~~eP~~AL~gg~dGl~~~~~i~~~a~~~L~--pgG~l~~E~g~~--~~~~~~~~~~~~~~~~~ 283 (307)
T PRK11805 210 PYVDAEDMADLPAEYRHEPELALAAGDDGLDLVRRILAEAPDYLT--EDGVLVVEVGNS--RVHLEEAYPDVPFTWLE 283 (307)
T ss_pred CCCCccchhhcCHhhccCccceeeCCCchHHHHHHHHHHHHHhcC--CCCEEEEEECcC--HHHHHHHHhhCCCEEEE
Confidence 54221 123577888889998 667777654432 22344455566665433
|
|
| >TIGR02143 trmA_only tRNA (uracil-5-)-methyltransferase | Back alignment and domain information |
|---|
Probab=99.28 E-value=5e-11 Score=106.85 Aligned_cols=146 Identities=14% Similarity=0.161 Sum_probs=101.7
Q ss_pred HHHHHHHHhccCCCCCCeEEEecCCCCHHHHHHHHhCCEEEEEcCCCcHHHHHHHHHHHHHcCC-ceEEEEeecCCCCcC
Q 026274 56 VILAEYVWQQRYRFSGANVVELGAGTSLPGLVAAKVGSNVTLTDDSNRIEVLKNMRRVCEMNKL-NCRVMGLTWGFLDAS 134 (241)
Q Consensus 56 ~~L~~~l~~~~~~~~~~~VLElGcGtGl~sl~la~~g~~V~~tD~~~~~~~l~~~~~n~~~n~~-~~~~~~l~w~~~~~~ 134 (241)
..|.+++.+.... .+.+|||||||+|.+|+.+++...+|+++|+++ ++++.+++|+..|++ ++++...+..+....
T Consensus 184 ~~l~~~v~~~~~~-~~~~vlDl~~G~G~~sl~la~~~~~v~~vE~~~--~av~~a~~n~~~~~~~~v~~~~~d~~~~~~~ 260 (353)
T TIGR02143 184 IKMLEWACEVTQG-SKGDLLELYCGNGNFSLALAQNFRRVLATEIAK--PSVNAAQYNIAANNIDNVQIIRMSAEEFTQA 260 (353)
T ss_pred HHHHHHHHHHhhc-CCCcEEEEeccccHHHHHHHHhCCEEEEEECCH--HHHHHHHHHHHHcCCCcEEEEEcCHHHHHHH
Confidence 4444454443221 234699999999999999999877999999995 799999999999987 577777676543221
Q ss_pred c-----C---------CCCCcEEEEcCCcCCCccHHHHHHHHHHHhhcCCCeEEEEEeeccCchhHHHHHHHHcCCEEEE
Q 026274 135 I-----F---------DLNPNIILGADVFYDASAFDDLFATITYLLQSSPGSVFITTYHNRSGHHLIEFLMVKWGLKCVK 200 (241)
Q Consensus 135 ~-----~---------~~~fDlIl~~dvly~~~~~~~ll~~~~~lL~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~ 200 (241)
. . ..+||+|+.-++ .....+.+++.+. + ++.++|+++.+.........+.+ ||++..
T Consensus 261 ~~~~~~~~~~~~~~~~~~~~d~v~lDPP--R~G~~~~~l~~l~---~--~~~ivYvsC~p~tlaRDl~~L~~--~Y~l~~ 331 (353)
T TIGR02143 261 MNGVREFRRLKGIDLKSYNCSTIFVDPP--RAGLDPDTCKLVQ---A--YERILYISCNPETLKANLEQLSE--THRVER 331 (353)
T ss_pred HhhccccccccccccccCCCCEEEECCC--CCCCcHHHHHHHH---c--CCcEEEEEcCHHHHHHHHHHHhc--CcEEEE
Confidence 0 0 124899998555 2344555555543 3 57899999888766666666653 377766
Q ss_pred E--ecCCCCCCcccc
Q 026274 201 L--VDGFSFLPHYKA 213 (241)
Q Consensus 201 i--~~~~~~~p~~~~ 213 (241)
+ .|+|+.++|.+.
T Consensus 332 v~~~DmFP~T~HvE~ 346 (353)
T TIGR02143 332 FALFDQFPYTHHMEC 346 (353)
T ss_pred EEEcccCCCCCcEEE
Confidence 6 888888877754
|
This family consists exclusively of proteins believed to act as tRNA (uracil-5-)-methyltransferase. All members of far are proteobacterial. The seed alignment was taken directly from pfam05958 in Pfam 12.0, but higher cutoffs are used to select only functionally equivalent proteins. Homologous proteins excluded by the higher cutoff scores of this model include other uracil methyltransferases, such as RumA, active on rRNA. |
| >PF05401 NodS: Nodulation protein S (NodS); InterPro: IPR008715 This entry consists of nodulation S (NodS) proteins | Back alignment and domain information |
|---|
Probab=99.28 E-value=1.9e-11 Score=99.53 Aligned_cols=100 Identities=13% Similarity=0.077 Sum_probs=73.4
Q ss_pred CeEEEecCCCCHHHHHHHHhCCEEEEEcCCCcHHHHHHHHHHHHHcCCceEEEEeecCCCCcCcCCCCCcEEEEcCCcCC
Q 026274 72 ANVVELGAGTSLPGLVAAKVGSNVTLTDDSNRIEVLKNMRRVCEMNKLNCRVMGLTWGFLDASIFDLNPNIILGADVFYD 151 (241)
Q Consensus 72 ~~VLElGcGtGl~sl~la~~g~~V~~tD~~~~~~~l~~~~~n~~~n~~~~~~~~l~w~~~~~~~~~~~fDlIl~~dvly~ 151 (241)
.++||+|||.|.++..||....+++++|+++ .+++.+++.... ...+++...+..+. .++++||+|+.++++||
T Consensus 45 ~~alEvGCs~G~lT~~LA~rCd~LlavDis~--~Al~~Ar~Rl~~-~~~V~~~~~dvp~~---~P~~~FDLIV~SEVlYY 118 (201)
T PF05401_consen 45 RRALEVGCSIGVLTERLAPRCDRLLAVDISP--RALARARERLAG-LPHVEWIQADVPEF---WPEGRFDLIVLSEVLYY 118 (201)
T ss_dssp EEEEEE--TTSHHHHHHGGGEEEEEEEES-H--HHHHHHHHHTTT--SSEEEEES-TTT------SS-EEEEEEES-GGG
T ss_pred ceeEecCCCccHHHHHHHHhhCceEEEeCCH--HHHHHHHHhcCC-CCCeEEEECcCCCC---CCCCCeeEEEEehHhHc
Confidence 4799999999999999999988999999995 699999887763 24677777665443 34579999999999999
Q ss_pred Ccc---HHHHHHHHHHHhhcCCCeEEEEEee
Q 026274 152 ASA---FDDLFATITYLLQSSPGSVFITTYH 179 (241)
Q Consensus 152 ~~~---~~~ll~~~~~lL~~~~~~~~~~~~~ 179 (241)
..+ +..+++.+...|+ |||.+++++.
T Consensus 119 L~~~~~L~~~l~~l~~~L~--pgG~LV~g~~ 147 (201)
T PF05401_consen 119 LDDAEDLRAALDRLVAALA--PGGHLVFGHA 147 (201)
T ss_dssp SSSHHHHHHHHHHHHHTEE--EEEEEEEEEE
T ss_pred CCCHHHHHHHHHHHHHHhC--CCCEEEEEEe
Confidence 865 4567777888887 7788887754
|
The products of the rhizobial nodulation genes are involved in the biosynthesis of lipochitin oligosaccharides (LCOs), which are host-specific signal molecules required for nodule formation. NodS is an S-adenosyl-L-methionine (SAM)-dependent methyltransferase involved in N methylation of LCOs. NodS uses N-deacetylated chitooligosaccharides, the products of the NodBC proteins, as its methyl acceptors [].; GO: 0008757 S-adenosylmethionine-dependent methyltransferase activity, 0009312 oligosaccharide biosynthetic process, 0009877 nodulation; PDB: 3OFK_D 3OFJ_A. |
| >TIGR00080 pimt protein-L-isoaspartate(D-aspartate) O-methyltransferase | Back alignment and domain information |
|---|
Probab=99.27 E-value=5.6e-11 Score=99.36 Aligned_cols=114 Identities=14% Similarity=0.025 Sum_probs=80.8
Q ss_pred cHHHHHHHHHhccCCCCCCeEEEecCCCCHHHHHHHHhCC---EEEEEcCCCcHHHHHHHHHHHHHcCC-ceEEEEeecC
Q 026274 54 CSVILAEYVWQQRYRFSGANVVELGAGTSLPGLVAAKVGS---NVTLTDDSNRIEVLKNMRRVCEMNKL-NCRVMGLTWG 129 (241)
Q Consensus 54 ~s~~L~~~l~~~~~~~~~~~VLElGcGtGl~sl~la~~g~---~V~~tD~~~~~~~l~~~~~n~~~n~~-~~~~~~l~w~ 129 (241)
++..+...+.......++.+|||+|||+|..+..+++... +|+++|+++ ++++.+++|++.++. ++++...|..
T Consensus 61 ~~p~~~~~~~~~l~~~~~~~VLDiG~GsG~~a~~la~~~~~~g~V~~vD~~~--~~~~~A~~~~~~~g~~~v~~~~~d~~ 138 (215)
T TIGR00080 61 SAPHMVAMMTELLELKPGMKVLEIGTGSGYQAAVLAEIVGRDGLVVSIERIP--ELAEKAERRLRKLGLDNVIVIVGDGT 138 (215)
T ss_pred chHHHHHHHHHHhCCCCcCEEEEECCCccHHHHHHHHHhCCCCEEEEEeCCH--HHHHHHHHHHHHCCCCCeEEEECCcc
Confidence 3344444554444456788999999999999999998743 599999995 799999999998876 4666665554
Q ss_pred CCCcCcCCCCCcEEEEcCCcCCCccHHHHHHHHHHHhhcCCCeEEEEEee
Q 026274 130 FLDASIFDLNPNIILGADVFYDASAFDDLFATITYLLQSSPGSVFITTYH 179 (241)
Q Consensus 130 ~~~~~~~~~~fDlIl~~dvly~~~~~~~ll~~~~~lL~~~~~~~~~~~~~ 179 (241)
+... ...+||+|++.....+ +.+.+.+.|+ +||.+++...
T Consensus 139 ~~~~--~~~~fD~Ii~~~~~~~------~~~~~~~~L~--~gG~lv~~~~ 178 (215)
T TIGR00080 139 QGWE--PLAPYDRIYVTAAGPK------IPEALIDQLK--EGGILVMPVG 178 (215)
T ss_pred cCCc--ccCCCCEEEEcCCccc------ccHHHHHhcC--cCcEEEEEEc
Confidence 3221 1247999998755433 3455778887 6777776643
|
Among the prokaryotes, the gene name is pcm. Among eukaryotes, pimt. |
| >PRK04266 fibrillarin; Provisional | Back alignment and domain information |
|---|
Probab=99.27 E-value=3.9e-10 Score=95.04 Aligned_cols=151 Identities=12% Similarity=0.070 Sum_probs=90.6
Q ss_pred CcceEEeccHH-HHHHHHHh---ccCCCCCCeEEEecCCCCHHHHHHHHhC--CEEEEEcCCCcHHHHHHHHHHHHHcCC
Q 026274 46 EYGLFVWPCSV-ILAEYVWQ---QRYRFSGANVVELGAGTSLPGLVAAKVG--SNVTLTDDSNRIEVLKNMRRVCEMNKL 119 (241)
Q Consensus 46 ~~g~~~W~~s~-~L~~~l~~---~~~~~~~~~VLElGcGtGl~sl~la~~g--~~V~~tD~~~~~~~l~~~~~n~~~n~~ 119 (241)
..+.++|.... .++.++.. .....++.+|||+|||+|..++.+++.. .+|+++|+++ +|++.+.++++.. .
T Consensus 44 ~~~~~~~~~~r~~~~~~ll~~~~~l~i~~g~~VlD~G~G~G~~~~~la~~v~~g~V~avD~~~--~ml~~l~~~a~~~-~ 120 (226)
T PRK04266 44 GVEYREWNPRRSKLAAAILKGLKNFPIKKGSKVLYLGAASGTTVSHVSDIVEEGVVYAVEFAP--RPMRELLEVAEER-K 120 (226)
T ss_pred CcEEEEECCCccchHHHHHhhHhhCCCCCCCEEEEEccCCCHHHHHHHHhcCCCeEEEEECCH--HHHHHHHHHhhhc-C
Confidence 34556775422 22222222 2344577899999999999999999873 4899999995 6998887776643 3
Q ss_pred ceEEEEeecCCCCc-CcCCCCCcEEEEcCCcCCCccHHHHHHHHHHHhhcCCCeEEEEEeec-----cCch----hHHHH
Q 026274 120 NCRVMGLTWGFLDA-SIFDLNPNIILGADVFYDASAFDDLFATITYLLQSSPGSVFITTYHN-----RSGH----HLIEF 189 (241)
Q Consensus 120 ~~~~~~l~w~~~~~-~~~~~~fDlIl~~dvly~~~~~~~ll~~~~~lL~~~~~~~~~~~~~~-----r~~~----~~~~~ 189 (241)
++.+...|..+... .....+||+|+..-. .+.....+++.+.++|+ |||.+++..+. +... .....
T Consensus 121 nv~~i~~D~~~~~~~~~l~~~~D~i~~d~~--~p~~~~~~L~~~~r~LK--pGG~lvI~v~~~~~d~~~~~~~~~~~~~~ 196 (226)
T PRK04266 121 NIIPILADARKPERYAHVVEKVDVIYQDVA--QPNQAEIAIDNAEFFLK--DGGYLLLAIKARSIDVTKDPKEIFKEEIR 196 (226)
T ss_pred CcEEEECCCCCcchhhhccccCCEEEECCC--ChhHHHHHHHHHHHhcC--CCcEEEEEEecccccCcCCHHHHHHHHHH
Confidence 34444444332110 112346999985311 12233456899999998 55655553221 1111 11224
Q ss_pred HHHHcCCEEEEEec
Q 026274 190 LMVKWGLKCVKLVD 203 (241)
Q Consensus 190 ~~~~~g~~~~~i~~ 203 (241)
.+++.||+.....+
T Consensus 197 ~l~~aGF~~i~~~~ 210 (226)
T PRK04266 197 KLEEGGFEILEVVD 210 (226)
T ss_pred HHHHcCCeEEEEEc
Confidence 56788999988744
|
|
| >PRK13944 protein-L-isoaspartate O-methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.27 E-value=7.1e-11 Score=98.12 Aligned_cols=111 Identities=13% Similarity=0.038 Sum_probs=79.3
Q ss_pred HHHHHHHhccCCCCCCeEEEecCCCCHHHHHHHHh---CCEEEEEcCCCcHHHHHHHHHHHHHcCCc--eEEEEeecCCC
Q 026274 57 ILAEYVWQQRYRFSGANVVELGAGTSLPGLVAAKV---GSNVTLTDDSNRIEVLKNMRRVCEMNKLN--CRVMGLTWGFL 131 (241)
Q Consensus 57 ~L~~~l~~~~~~~~~~~VLElGcGtGl~sl~la~~---g~~V~~tD~~~~~~~l~~~~~n~~~n~~~--~~~~~l~w~~~ 131 (241)
.+..++.+.....++.+|||+|||+|..+..+++. +.+|+++|+++ ++++.+++|+..++.. +++...|..+.
T Consensus 59 ~~~~~~~~~l~~~~~~~VLDiG~GsG~~~~~la~~~~~~g~V~~iD~~~--~~~~~a~~~l~~~~~~~~v~~~~~d~~~~ 136 (205)
T PRK13944 59 HMVAMMCELIEPRPGMKILEVGTGSGYQAAVCAEAIERRGKVYTVEIVK--ELAIYAAQNIERLGYWGVVEVYHGDGKRG 136 (205)
T ss_pred HHHHHHHHhcCCCCCCEEEEECcCccHHHHHHHHhcCCCCEEEEEeCCH--HHHHHHHHHHHHcCCCCcEEEEECCcccC
Confidence 33444444434456789999999999999888875 35899999995 6999999999888763 56666555432
Q ss_pred CcCcCCCCCcEEEEcCCcCCCccHHHHHHHHHHHhhcCCCeEEEEEee
Q 026274 132 DASIFDLNPNIILGADVFYDASAFDDLFATITYLLQSSPGSVFITTYH 179 (241)
Q Consensus 132 ~~~~~~~~fDlIl~~dvly~~~~~~~ll~~~~~lL~~~~~~~~~~~~~ 179 (241)
.. ...+||+|++..++.+. .+.+.+.|+ +||.++++..
T Consensus 137 ~~--~~~~fD~Ii~~~~~~~~------~~~l~~~L~--~gG~lvi~~~ 174 (205)
T PRK13944 137 LE--KHAPFDAIIVTAAASTI------PSALVRQLK--DGGVLVIPVE 174 (205)
T ss_pred Cc--cCCCccEEEEccCcchh------hHHHHHhcC--cCcEEEEEEc
Confidence 21 13589999988776543 346778887 6777777653
|
|
| >PRK15451 tRNA cmo(5)U34 methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.26 E-value=7.8e-11 Score=100.57 Aligned_cols=101 Identities=17% Similarity=0.188 Sum_probs=78.3
Q ss_pred CCCeEEEecCCCCHHHHHHHHh----CCEEEEEcCCCcHHHHHHHHHHHHHcCC--ceEEEEeecCCCCcCcCCCCCcEE
Q 026274 70 SGANVVELGAGTSLPGLVAAKV----GSNVTLTDDSNRIEVLKNMRRVCEMNKL--NCRVMGLTWGFLDASIFDLNPNII 143 (241)
Q Consensus 70 ~~~~VLElGcGtGl~sl~la~~----g~~V~~tD~~~~~~~l~~~~~n~~~n~~--~~~~~~l~w~~~~~~~~~~~fDlI 143 (241)
.+.+|||+|||+|..+..+++. +.+|+++|.++ +|++.+++++..++. ++++...+..+.. ...+|+|
T Consensus 56 ~~~~vLDlGcGtG~~~~~l~~~~~~~~~~v~gvD~S~--~ml~~A~~~~~~~~~~~~v~~~~~d~~~~~----~~~~D~v 129 (247)
T PRK15451 56 PGTQVYDLGCSLGAATLSVRRNIHHDNCKIIAIDNSP--AMIERCRRHIDAYKAPTPVDVIEGDIRDIA----IENASMV 129 (247)
T ss_pred CCCEEEEEcccCCHHHHHHHHhcCCCCCeEEEEeCCH--HHHHHHHHHHHhcCCCCCeEEEeCChhhCC----CCCCCEE
Confidence 5679999999999998888772 46999999995 799999999987655 5666665554321 2359999
Q ss_pred EEcCCcCCCc--cHHHHHHHHHHHhhcCCCeEEEEEe
Q 026274 144 LGADVFYDAS--AFDDLFATITYLLQSSPGSVFITTY 178 (241)
Q Consensus 144 l~~dvly~~~--~~~~ll~~~~~lL~~~~~~~~~~~~ 178 (241)
+++-++++.+ ....+++.+.+.|+ |||.+++..
T Consensus 130 v~~~~l~~l~~~~~~~~l~~i~~~Lk--pGG~l~l~e 164 (247)
T PRK15451 130 VLNFTLQFLEPSERQALLDKIYQGLN--PGGALVLSE 164 (247)
T ss_pred ehhhHHHhCCHHHHHHHHHHHHHhcC--CCCEEEEEE
Confidence 9998887754 34689999999998 666666653
|
|
| >TIGR00095 RNA methyltransferase, RsmD family | Back alignment and domain information |
|---|
Probab=99.26 E-value=7.8e-11 Score=96.73 Aligned_cols=111 Identities=14% Similarity=0.120 Sum_probs=80.8
Q ss_pred CCCCCCeEEEecCCCCHHHHHHHHhCC-EEEEEcCCCcHHHHHHHHHHHHHcCCc--eEEEEeecCCCCcCcC-CCCCcE
Q 026274 67 YRFSGANVVELGAGTSLPGLVAAKVGS-NVTLTDDSNRIEVLKNMRRVCEMNKLN--CRVMGLTWGFLDASIF-DLNPNI 142 (241)
Q Consensus 67 ~~~~~~~VLElGcGtGl~sl~la~~g~-~V~~tD~~~~~~~l~~~~~n~~~n~~~--~~~~~l~w~~~~~~~~-~~~fDl 142 (241)
....+.+||||+||+|.+|+.++++|+ +|+++|.++ .+++.+++|++.++.. +++...|..+...... ..+++.
T Consensus 46 ~~~~g~~vLDLfaGsG~lglea~srga~~v~~vE~~~--~a~~~~~~N~~~~~~~~~~~~~~~D~~~~l~~~~~~~~~~d 123 (189)
T TIGR00095 46 PEIQGAHLLDVFAGSGLLGEEALSRGAKVAFLEEDDR--KANQTLKENLALLKSGEQAEVVRNSALRALKFLAKKPTFDN 123 (189)
T ss_pred HhcCCCEEEEecCCCcHHHHHHHhCCCCEEEEEeCCH--HHHHHHHHHHHHhCCcccEEEEehhHHHHHHHhhccCCCce
Confidence 345788999999999999999999998 899999996 6999999999999864 5555555433211111 223455
Q ss_pred EEEcCCcCCCccHHHHHHHHHH--HhhcCCCeEEEEEeecc
Q 026274 143 ILGADVFYDASAFDDLFATITY--LLQSSPGSVFITTYHNR 181 (241)
Q Consensus 143 Il~~dvly~~~~~~~ll~~~~~--lL~~~~~~~~~~~~~~r 181 (241)
|+..|+-|.......+++.+.. +| ++++++++.+..+
T Consensus 124 vv~~DPPy~~~~~~~~l~~l~~~~~l--~~~~iiv~E~~~~ 162 (189)
T TIGR00095 124 VIYLDPPFFNGALQALLELCENNWIL--EDTVLIVVEEDRE 162 (189)
T ss_pred EEEECcCCCCCcHHHHHHHHHHCCCC--CCCeEEEEEecCC
Confidence 5557888877777777776654 34 3778888876654
|
This model represents a family of uncharacterized bacterial proteins. Members are present in nearly every complete bacterial genome, always in a single copy. PSI-BLAST analysis shows homology to several families of SAM-dependent methyltransferases, including ribosomal RNA adenine dimethylases. |
| >TIGR01177 conserved hypothetical protein TIGR01177 | Back alignment and domain information |
|---|
Probab=99.26 E-value=2.2e-10 Score=101.80 Aligned_cols=135 Identities=16% Similarity=0.027 Sum_probs=94.7
Q ss_pred HHHHHHHhccCCCCCCeEEEecCCCCHHHHHHHHhCCEEEEEcCCCcHHHHHHHHHHHHHcCCc-eEEEEeecCCCCcCc
Q 026274 57 ILAEYVWQQRYRFSGANVVELGAGTSLPGLVAAKVGSNVTLTDDSNRIEVLKNMRRVCEMNKLN-CRVMGLTWGFLDASI 135 (241)
Q Consensus 57 ~L~~~l~~~~~~~~~~~VLElGcGtGl~sl~la~~g~~V~~tD~~~~~~~l~~~~~n~~~n~~~-~~~~~l~w~~~~~~~ 135 (241)
.++..+.......++.+|||.|||||.+.+.++..|++|+++|+++ .|+..++.|++..+.. +.+...|..+. +.
T Consensus 169 ~la~~~~~l~~~~~g~~vLDp~cGtG~~lieaa~~~~~v~g~Di~~--~~~~~a~~nl~~~g~~~i~~~~~D~~~l--~~ 244 (329)
T TIGR01177 169 KLARAMVNLARVTEGDRVLDPFCGTGGFLIEAGLMGAKVIGCDIDW--KMVAGARINLEHYGIEDFFVKRGDATKL--PL 244 (329)
T ss_pred HHHHHHHHHhCCCCcCEEEECCCCCCHHHHHHHHhCCeEEEEcCCH--HHHHHHHHHHHHhCCCCCeEEecchhcC--Cc
Confidence 4555555444445678999999999999999999999999999995 6999999999887764 34555554432 23
Q ss_pred CCCCCcEEEEcCCcCCC---------ccHHHHHHHHHHHhhcCCCeEEEEEeeccCchhHHHHHHHHcCCEEEEE
Q 026274 136 FDLNPNIILGADVFYDA---------SAFDDLFATITYLLQSSPGSVFITTYHNRSGHHLIEFLMVKWGLKCVKL 201 (241)
Q Consensus 136 ~~~~fDlIl~~dvly~~---------~~~~~ll~~~~~lL~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~i 201 (241)
.+.+||+|+++.++-.. .....+++.+.+.|+ +||.+++....+. ....+++++|| +...
T Consensus 245 ~~~~~D~Iv~dPPyg~~~~~~~~~~~~l~~~~l~~~~r~Lk--~gG~lv~~~~~~~---~~~~~~~~~g~-i~~~ 313 (329)
T TIGR01177 245 SSESVDAIATDPPYGRSTTAAGDGLESLYERSLEEFHEVLK--SEGWIVYAVPTRI---DLESLAEDAFR-VVKR 313 (329)
T ss_pred ccCCCCEEEECCCCcCcccccCCchHHHHHHHHHHHHHHcc--CCcEEEEEEcCCC---CHHHHHhhcCc-chhe
Confidence 34689999987654221 225788999999998 4554444433322 24456788899 6554
|
This family is found exclusively in the Archaea. |
| >PF13649 Methyltransf_25: Methyltransferase domain; PDB: 3BXO_B 3GGD_A 3PX2_A 3PX3_A 3PFH_D 3PFG_A 1Y8C_A | Back alignment and domain information |
|---|
Probab=99.25 E-value=1.4e-11 Score=90.58 Aligned_cols=91 Identities=20% Similarity=0.210 Sum_probs=71.7
Q ss_pred EEEecCCCCHHHHHHHHhC-----CEEEEEcCCCcHHHHHHHHHHHHHcCCceEEEEeecCCCCcCcCCCCCcEEEEcCC
Q 026274 74 VVELGAGTSLPGLVAAKVG-----SNVTLTDDSNRIEVLKNMRRVCEMNKLNCRVMGLTWGFLDASIFDLNPNIILGADV 148 (241)
Q Consensus 74 VLElGcGtGl~sl~la~~g-----~~V~~tD~~~~~~~l~~~~~n~~~n~~~~~~~~l~w~~~~~~~~~~~fDlIl~~dv 148 (241)
|||+|||+|.....+++.. .+++++|+++ +|++.++++....+.++++...|+.+. +...++||+|+++..
T Consensus 1 ILDlgcG~G~~~~~l~~~~~~~~~~~~~gvD~s~--~~l~~~~~~~~~~~~~~~~~~~D~~~l--~~~~~~~D~v~~~~~ 76 (101)
T PF13649_consen 1 ILDLGCGTGRVTRALARRFDAGPSSRVIGVDISP--EMLELAKKRFSEDGPKVRFVQADARDL--PFSDGKFDLVVCSGL 76 (101)
T ss_dssp -EEET-TTSHHHHHHHHHS-----SEEEEEES-H--HHHHHHHHHSHHTTTTSEEEESCTTCH--HHHSSSEEEEEE-TT
T ss_pred CEEeecCCcHHHHHHHHHhhhcccceEEEEECCH--HHHHHHHHhchhcCCceEEEECCHhHC--cccCCCeeEEEEcCC
Confidence 7999999999999999874 6999999995 799999999888777888888888664 223458999999655
Q ss_pred -cCC--CccHHHHHHHHHHHhhc
Q 026274 149 -FYD--ASAFDDLFATITYLLQS 168 (241)
Q Consensus 149 -ly~--~~~~~~ll~~~~~lL~~ 168 (241)
+.| .+....+++.+.++++|
T Consensus 77 ~~~~~~~~~~~~ll~~~~~~l~p 99 (101)
T PF13649_consen 77 SLHHLSPEELEALLRRIARLLRP 99 (101)
T ss_dssp GGGGSSHHHHHHHHHHHHHTEEE
T ss_pred ccCCCCHHHHHHHHHHHHHHhCC
Confidence 555 34688999999999984
|
|
| >PRK05785 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=99.25 E-value=8.4e-11 Score=99.15 Aligned_cols=87 Identities=15% Similarity=0.122 Sum_probs=71.2
Q ss_pred CCeEEEecCCCCHHHHHHHHh-CCEEEEEcCCCcHHHHHHHHHHHHHcCCceEEEEeecCCCCcCcCCCCCcEEEEcCCc
Q 026274 71 GANVVELGAGTSLPGLVAAKV-GSNVTLTDDSNRIEVLKNMRRVCEMNKLNCRVMGLTWGFLDASIFDLNPNIILGADVF 149 (241)
Q Consensus 71 ~~~VLElGcGtGl~sl~la~~-g~~V~~tD~~~~~~~l~~~~~n~~~n~~~~~~~~l~w~~~~~~~~~~~fDlIl~~dvl 149 (241)
+.+|||+|||||..+..+++. +.+|+++|+++ +|++.++... .....+..+. +..+++||+|+++.++
T Consensus 52 ~~~VLDlGcGtG~~~~~l~~~~~~~v~gvD~S~--~Ml~~a~~~~-------~~~~~d~~~l--p~~d~sfD~v~~~~~l 120 (226)
T PRK05785 52 PKKVLDVAAGKGELSYHFKKVFKYYVVALDYAE--NMLKMNLVAD-------DKVVGSFEAL--PFRDKSFDVVMSSFAL 120 (226)
T ss_pred CCeEEEEcCCCCHHHHHHHHhcCCEEEEECCCH--HHHHHHHhcc-------ceEEechhhC--CCCCCCEEEEEecChh
Confidence 579999999999999999988 67999999995 6999877531 1233444332 4456789999999999
Q ss_pred CCCccHHHHHHHHHHHhhc
Q 026274 150 YDASAFDDLFATITYLLQS 168 (241)
Q Consensus 150 y~~~~~~~ll~~~~~lL~~ 168 (241)
++.++.+.+++.+.++|++
T Consensus 121 ~~~~d~~~~l~e~~RvLkp 139 (226)
T PRK05785 121 HASDNIEKVIAEFTRVSRK 139 (226)
T ss_pred hccCCHHHHHHHHHHHhcC
Confidence 9999999999999999984
|
|
| >TIGR01934 MenG_MenH_UbiE ubiquinone/menaquinone biosynthesis methyltransferases | Back alignment and domain information |
|---|
Probab=99.24 E-value=6.4e-10 Score=92.47 Aligned_cols=101 Identities=22% Similarity=0.244 Sum_probs=78.7
Q ss_pred CCCCeEEEecCCCCHHHHHHHHhCC---EEEEEcCCCcHHHHHHHHHHHHHcCCceEEEEeecCCCCcCcCCCCCcEEEE
Q 026274 69 FSGANVVELGAGTSLPGLVAAKVGS---NVTLTDDSNRIEVLKNMRRVCEMNKLNCRVMGLTWGFLDASIFDLNPNIILG 145 (241)
Q Consensus 69 ~~~~~VLElGcGtGl~sl~la~~g~---~V~~tD~~~~~~~l~~~~~n~~~n~~~~~~~~l~w~~~~~~~~~~~fDlIl~ 145 (241)
.++.+|||+|||+|..+..+++.+. +++++|+++ .+++.++++.. ...++.+...+..+.. ....+||+|++
T Consensus 38 ~~~~~vldiG~G~G~~~~~~~~~~~~~~~~~~iD~~~--~~~~~~~~~~~-~~~~i~~~~~d~~~~~--~~~~~~D~i~~ 112 (223)
T TIGR01934 38 FKGQKVLDVACGTGDLAIELAKSAPDRGKVTGVDFSS--EMLEVAKKKSE-LPLNIEFIQADAEALP--FEDNSFDAVTI 112 (223)
T ss_pred CCCCeEEEeCCCCChhHHHHHHhcCCCceEEEEECCH--HHHHHHHHHhc-cCCCceEEecchhcCC--CCCCcEEEEEE
Confidence 3678999999999999998888654 899999995 68888888775 2334566665554432 22458999999
Q ss_pred cCCcCCCccHHHHHHHHHHHhhcCCCeEEEE
Q 026274 146 ADVFYDASAFDDLFATITYLLQSSPGSVFIT 176 (241)
Q Consensus 146 ~dvly~~~~~~~ll~~~~~lL~~~~~~~~~~ 176 (241)
+.++.+..+...+++.+.++|+ +||.+++
T Consensus 113 ~~~~~~~~~~~~~l~~~~~~L~--~gG~l~~ 141 (223)
T TIGR01934 113 AFGLRNVTDIQKALREMYRVLK--PGGRLVI 141 (223)
T ss_pred eeeeCCcccHHHHHHHHHHHcC--CCcEEEE
Confidence 9999999999999999999998 4555443
|
Note that a number of non-orthologous genes which are members of pfam03737 have been erroneously annotated as MenG methyltransferases. |
| >PRK06202 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=99.24 E-value=2.6e-10 Score=96.30 Aligned_cols=93 Identities=13% Similarity=0.042 Sum_probs=69.1
Q ss_pred CCCCeEEEecCCCCHHHHHHHHh----C--CEEEEEcCCCcHHHHHHHHHHHHHcCCceEEEEeecCCCCcCcCCCCCcE
Q 026274 69 FSGANVVELGAGTSLPGLVAAKV----G--SNVTLTDDSNRIEVLKNMRRVCEMNKLNCRVMGLTWGFLDASIFDLNPNI 142 (241)
Q Consensus 69 ~~~~~VLElGcGtGl~sl~la~~----g--~~V~~tD~~~~~~~l~~~~~n~~~n~~~~~~~~l~w~~~~~~~~~~~fDl 142 (241)
.++.+|||||||+|.++..+++. | .+|+++|+++ +|++.++++...++..+ ...+-+... ..+.+||+
T Consensus 59 ~~~~~iLDlGcG~G~~~~~L~~~~~~~g~~~~v~gvD~s~--~~l~~a~~~~~~~~~~~--~~~~~~~l~--~~~~~fD~ 132 (232)
T PRK06202 59 DRPLTLLDIGCGGGDLAIDLARWARRDGLRLEVTAIDPDP--RAVAFARANPRRPGVTF--RQAVSDELV--AEGERFDV 132 (232)
T ss_pred CCCcEEEEeccCCCHHHHHHHHHHHhCCCCcEEEEEcCCH--HHHHHHHhccccCCCeE--EEEeccccc--ccCCCccE
Confidence 35679999999999988888753 4 4899999996 69999988766555443 333332221 23468999
Q ss_pred EEEcCCcCCCcc--HHHHHHHHHHHhh
Q 026274 143 ILGADVFYDASA--FDDLFATITYLLQ 167 (241)
Q Consensus 143 Il~~dvly~~~~--~~~ll~~~~~lL~ 167 (241)
|+++.+++|.++ ...+++.+.++++
T Consensus 133 V~~~~~lhh~~d~~~~~~l~~~~r~~~ 159 (232)
T PRK06202 133 VTSNHFLHHLDDAEVVRLLADSAALAR 159 (232)
T ss_pred EEECCeeecCChHHHHHHHHHHHHhcC
Confidence 999999999766 4568888888875
|
|
| >PRK07402 precorrin-6B methylase; Provisional | Back alignment and domain information |
|---|
Probab=99.23 E-value=2.7e-09 Score=87.86 Aligned_cols=126 Identities=17% Similarity=0.203 Sum_probs=83.1
Q ss_pred CCCCCCeEEEecCCCCHHHHHHHHh--CCEEEEEcCCCcHHHHHHHHHHHHHcCC-ceEEEEeecCCCCcCcCCCCCcEE
Q 026274 67 YRFSGANVVELGAGTSLPGLVAAKV--GSNVTLTDDSNRIEVLKNMRRVCEMNKL-NCRVMGLTWGFLDASIFDLNPNII 143 (241)
Q Consensus 67 ~~~~~~~VLElGcGtGl~sl~la~~--g~~V~~tD~~~~~~~l~~~~~n~~~n~~-~~~~~~l~w~~~~~~~~~~~fDlI 143 (241)
...++.+|||+|||+|..++.+++. +.+|+++|.++ ++++.+++|++.++. ++++...+..+.... ....+|.+
T Consensus 37 ~~~~~~~VLDiG~G~G~~~~~la~~~~~~~V~~vD~s~--~~~~~a~~n~~~~~~~~v~~~~~d~~~~~~~-~~~~~d~v 113 (196)
T PRK07402 37 RLEPDSVLWDIGAGTGTIPVEAGLLCPKGRVIAIERDE--EVVNLIRRNCDRFGVKNVEVIEGSAPECLAQ-LAPAPDRV 113 (196)
T ss_pred CCCCCCEEEEeCCCCCHHHHHHHHHCCCCEEEEEeCCH--HHHHHHHHHHHHhCCCCeEEEECchHHHHhh-CCCCCCEE
Confidence 3446789999999999999999875 35999999995 799999999988775 455555444321111 12245666
Q ss_pred EEcCCcCCCccHHHHHHHHHHHhhcCCCeEEEEEeeccCchhHHHHHH---HHcCCEEEEE
Q 026274 144 LGADVFYDASAFDDLFATITYLLQSSPGSVFITTYHNRSGHHLIEFLM---VKWGLKCVKL 201 (241)
Q Consensus 144 l~~dvly~~~~~~~ll~~~~~lL~~~~~~~~~~~~~~r~~~~~~~~~~---~~~g~~~~~i 201 (241)
+.. .......+++.+.++|+ +||.+++..............+ +..++++..+
T Consensus 114 ~~~----~~~~~~~~l~~~~~~Lk--pgG~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 168 (196)
T PRK07402 114 CIE----GGRPIKEILQAVWQYLK--PGGRLVATASSLEGLYAISEGLAQLQARNIEVVQA 168 (196)
T ss_pred EEE----CCcCHHHHHHHHHHhcC--CCeEEEEEeecHHHHHHHHHHHHhcCCCCceEEEE
Confidence 542 23456889999999998 5666666544432222222223 2357777666
|
|
| >TIGR00091 tRNA (guanine-N(7)-)-methyltransferase | Back alignment and domain information |
|---|
Probab=99.22 E-value=1.4e-10 Score=95.42 Aligned_cols=128 Identities=13% Similarity=0.015 Sum_probs=87.4
Q ss_pred CCCeEEEecCCCCHHHHHHHHh--CCEEEEEcCCCcHHHHHHHHHHHHHcCC-ceEEEEeecCCCCcCcC-CCCCcEEEE
Q 026274 70 SGANVVELGAGTSLPGLVAAKV--GSNVTLTDDSNRIEVLKNMRRVCEMNKL-NCRVMGLTWGFLDASIF-DLNPNIILG 145 (241)
Q Consensus 70 ~~~~VLElGcGtGl~sl~la~~--g~~V~~tD~~~~~~~l~~~~~n~~~n~~-~~~~~~l~w~~~~~~~~-~~~fDlIl~ 145 (241)
...++||||||+|..+..+|+. ..+|+++|+++ ++++.+++++..+++ ++++...+..+...... +..+|.|+.
T Consensus 16 ~~~~ilDiGcG~G~~~~~la~~~p~~~v~gvD~~~--~~l~~a~~~~~~~~l~ni~~i~~d~~~~~~~~~~~~~~d~v~~ 93 (194)
T TIGR00091 16 KAPLHLEIGCGKGRFLIDMAKQNPDKNFLGIEIHT--PIVLAANNKANKLGLKNLHVLCGDANELLDKFFPDGSLSKVFL 93 (194)
T ss_pred CCceEEEeCCCccHHHHHHHHhCCCCCEEEEEeeH--HHHHHHHHHHHHhCCCCEEEEccCHHHHHHhhCCCCceeEEEE
Confidence 3458999999999999999987 34899999996 699999999887765 57777766654322222 347999987
Q ss_pred cC--CcCCCc------cHHHHHHHHHHHhhcCCCeEEEEEeeccCchhHHHHHHHHc-CCEEEEE
Q 026274 146 AD--VFYDAS------AFDDLFATITYLLQSSPGSVFITTYHNRSGHHLIEFLMVKW-GLKCVKL 201 (241)
Q Consensus 146 ~d--vly~~~------~~~~ll~~~~~lL~~~~~~~~~~~~~~r~~~~~~~~~~~~~-g~~~~~i 201 (241)
+- +.+... ..+.+++.+.++|+ +||.+++..........+...+.+. +|.....
T Consensus 94 ~~pdpw~k~~h~~~r~~~~~~l~~~~r~Lk--pgG~l~~~td~~~~~~~~~~~~~~~~~f~~~~~ 156 (194)
T TIGR00091 94 NFPDPWPKKRHNKRRITQPHFLKEYANVLK--KGGVIHFKTDNEPLFEDMLKVLSENDLFENTSK 156 (194)
T ss_pred ECCCcCCCCCccccccCCHHHHHHHHHHhC--CCCEEEEEeCCHHHHHHHHHHHHhCCCeEeccc
Confidence 63 222211 12679999999998 6777777665554333333333334 4766544
|
In E. coli, this protein flanks the DNA repair protein MutY, also called micA. |
| >PRK15128 23S rRNA m(5)C1962 methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.22 E-value=4.5e-10 Score=102.02 Aligned_cols=129 Identities=19% Similarity=0.155 Sum_probs=88.8
Q ss_pred CCCCeEEEecCCCCHHHHHHHHhCC-EEEEEcCCCcHHHHHHHHHHHHHcCC---ceEEEEeecCCCCcCc--CCCCCcE
Q 026274 69 FSGANVVELGAGTSLPGLVAAKVGS-NVTLTDDSNRIEVLKNMRRVCEMNKL---NCRVMGLTWGFLDASI--FDLNPNI 142 (241)
Q Consensus 69 ~~~~~VLElGcGtGl~sl~la~~g~-~V~~tD~~~~~~~l~~~~~n~~~n~~---~~~~~~l~w~~~~~~~--~~~~fDl 142 (241)
.++++|||+|||||.+++.++..|+ +|+++|+++ .+++.+++|+..|++ ++++...|+.+..... ...+||+
T Consensus 219 ~~g~rVLDlfsgtG~~~l~aa~~ga~~V~~VD~s~--~al~~a~~N~~~Ngl~~~~v~~i~~D~~~~l~~~~~~~~~fDl 296 (396)
T PRK15128 219 VENKRVLNCFSYTGGFAVSALMGGCSQVVSVDTSQ--EALDIARQNVELNKLDLSKAEFVRDDVFKLLRTYRDRGEKFDV 296 (396)
T ss_pred cCCCeEEEeccCCCHHHHHHHhCCCCEEEEEECCH--HHHHHHHHHHHHcCCCCCcEEEEEccHHHHHHHHHhcCCCCCE
Confidence 3678999999999999998887777 899999995 699999999999987 3567766655432211 1347999
Q ss_pred EEEcCCcCCCc---------cHHHHHHHHHHHhhcCCCeEEEE-EeeccCchhHHHHH----HHHcCCEEEEE
Q 026274 143 ILGADVFYDAS---------AFDDLFATITYLLQSSPGSVFIT-TYHNRSGHHLIEFL----MVKWGLKCVKL 201 (241)
Q Consensus 143 Il~~dvly~~~---------~~~~ll~~~~~lL~~~~~~~~~~-~~~~r~~~~~~~~~----~~~~g~~~~~i 201 (241)
|++..+.|... .+..++....++|+ +||.+++ ++......+.+..+ +.+.|-++..+
T Consensus 297 VilDPP~f~~~k~~l~~~~~~y~~l~~~a~~lLk--~gG~lv~~scs~~~~~~~f~~~v~~aa~~~~~~~~~l 367 (396)
T PRK15128 297 IVMDPPKFVENKSQLMGACRGYKDINMLAIQLLN--PGGILLTFSCSGLMTSDLFQKIIADAAIDAGRDVQFI 367 (396)
T ss_pred EEECCCCCCCChHHHHHHHHHHHHHHHHHHHHcC--CCeEEEEEeCCCcCCHHHHHHHHHHHHHHcCCeEEEE
Confidence 99777765432 35566667788887 5565554 43333333333332 34556666555
|
|
| >TIGR00740 methyltransferase, putative | Back alignment and domain information |
|---|
Probab=99.22 E-value=3e-10 Score=96.31 Aligned_cols=102 Identities=15% Similarity=0.165 Sum_probs=79.8
Q ss_pred CCCeEEEecCCCCHHHHHHHHh----CCEEEEEcCCCcHHHHHHHHHHHHHcC--CceEEEEeecCCCCcCcCCCCCcEE
Q 026274 70 SGANVVELGAGTSLPGLVAAKV----GSNVTLTDDSNRIEVLKNMRRVCEMNK--LNCRVMGLTWGFLDASIFDLNPNII 143 (241)
Q Consensus 70 ~~~~VLElGcGtGl~sl~la~~----g~~V~~tD~~~~~~~l~~~~~n~~~n~--~~~~~~~l~w~~~~~~~~~~~fDlI 143 (241)
.+.+|||+|||+|..+..+++. +.+|+++|+++ +|++.+++++...+ .++++...++.+.. ...+|+|
T Consensus 53 ~~~~iLDlGcG~G~~~~~l~~~~~~p~~~v~gvD~s~--~ml~~a~~~~~~~~~~~~v~~~~~d~~~~~----~~~~d~v 126 (239)
T TIGR00740 53 PDSNVYDLGCSRGAATLSARRNINQPNVKIIGIDNSQ--PMVERCRQHIAAYHSEIPVEILCNDIRHVE----IKNASMV 126 (239)
T ss_pred CCCEEEEecCCCCHHHHHHHHhcCCCCCeEEEEeCCH--HHHHHHHHHHHhcCCCCCeEEEECChhhCC----CCCCCEE
Confidence 5678999999999999988874 45899999995 79999999887644 35677776665432 1258999
Q ss_pred EEcCCcCCCc--cHHHHHHHHHHHhhcCCCeEEEEEee
Q 026274 144 LGADVFYDAS--AFDDLFATITYLLQSSPGSVFITTYH 179 (241)
Q Consensus 144 l~~dvly~~~--~~~~ll~~~~~lL~~~~~~~~~~~~~ 179 (241)
+++.++++.. ....+++.+.+.|+ |||.+++...
T Consensus 127 ~~~~~l~~~~~~~~~~~l~~i~~~Lk--pgG~l~i~d~ 162 (239)
T TIGR00740 127 ILNFTLQFLPPEDRIALLTKIYEGLN--PNGVLVLSEK 162 (239)
T ss_pred eeecchhhCCHHHHHHHHHHHHHhcC--CCeEEEEeec
Confidence 9999887754 45789999999998 6677776643
|
A simple BLAST search finds all members of this family and weaker hits to a large number of known and predicted methyltransferases. A single iteration with PSI-BLAST, keeping only clear members of the family, leads to a large number of highly significant hits to a set of known and predicted methyltransferases with a large repertoire of different specifities. This model is restricted to a subfamily found so far only in the Proteobacteria, sharing consistent length, full-length homology, and on average better than 35 % identity. It is reasonable to predict equivalent function within this subfamily. |
| >KOG1499 consensus Protein arginine N-methyltransferase PRMT1 and related enzymes [Posttranslational modification, protein turnover, chaperones; Transcription; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.22 E-value=3e-11 Score=105.71 Aligned_cols=133 Identities=20% Similarity=0.281 Sum_probs=93.4
Q ss_pred HHhccCCCCCCeEEEecCCCCHHHHHHHHhCC-EEEEEcCCCcHHHHHHHHHHHHHcCCc--eEEEEeecCCCCcCcCCC
Q 026274 62 VWQQRYRFSGANVVELGAGTSLPGLVAAKVGS-NVTLTDDSNRIEVLKNMRRVCEMNKLN--CRVMGLTWGFLDASIFDL 138 (241)
Q Consensus 62 l~~~~~~~~~~~VLElGcGtGl~sl~la~~g~-~V~~tD~~~~~~~l~~~~~n~~~n~~~--~~~~~l~w~~~~~~~~~~ 138 (241)
+.+++..++++.|||+|||||++|+++|+.|| +|.++|.+. +++.+++.+..|+.. +++.+....+...| .+
T Consensus 52 i~~n~~lf~dK~VlDVGcGtGILS~F~akAGA~~V~aVe~S~---ia~~a~~iv~~N~~~~ii~vi~gkvEdi~LP--~e 126 (346)
T KOG1499|consen 52 ILQNKHLFKDKTVLDVGCGTGILSMFAAKAGARKVYAVEASS---IADFARKIVKDNGLEDVITVIKGKVEDIELP--VE 126 (346)
T ss_pred HhcchhhcCCCEEEEcCCCccHHHHHHHHhCcceEEEEechH---HHHHHHHHHHhcCccceEEEeecceEEEecC--cc
Confidence 44566789999999999999999999999999 899999994 889999999999885 44444444444223 46
Q ss_pred CCcEEEEc---CCcCCCccHHHHHHHHHHHhhcCCCeEE--------EEEeeccCchhH-HHHHHHHcCCEEEEE
Q 026274 139 NPNIILGA---DVFYDASAFDDLFATITYLLQSSPGSVF--------ITTYHNRSGHHL-IEFLMVKWGLKCVKL 201 (241)
Q Consensus 139 ~fDlIl~~---dvly~~~~~~~ll~~~~~lL~~~~~~~~--------~~~~~~r~~~~~-~~~~~~~~g~~~~~i 201 (241)
+.|+|++- -++++...+..++-.-.+.|+ +||++ +.+...+..... +.+...-+||....+
T Consensus 127 KVDiIvSEWMGy~Ll~EsMldsVl~ARdkwL~--~~G~i~P~~a~l~l~~i~d~~~~~~~i~fW~~Vygfdms~~ 199 (346)
T KOG1499|consen 127 KVDIIVSEWMGYFLLYESMLDSVLYARDKWLK--EGGLIYPDRATLYLAAIEDDSYKDDKIGFWDDVYGFDMSCI 199 (346)
T ss_pred ceeEEeehhhhHHHHHhhhhhhhhhhhhhccC--CCceEccccceEEEEeccCchhhhhhcCccccccccchhhh
Confidence 89999842 344455667777777778887 44443 344444433322 334556667666555
|
|
| >PLN02336 phosphoethanolamine N-methyltransferase | Back alignment and domain information |
|---|
Probab=99.20 E-value=1.9e-10 Score=107.00 Aligned_cols=103 Identities=22% Similarity=0.209 Sum_probs=77.7
Q ss_pred CCCCeEEEecCCCCHHHHHHHHhCCEEEEEcCCCcHHHHHHHHHHHHHcCCceEEEEeecCCCCcCcCCCCCcEEEEcCC
Q 026274 69 FSGANVVELGAGTSLPGLVAAKVGSNVTLTDDSNRIEVLKNMRRVCEMNKLNCRVMGLTWGFLDASIFDLNPNIILGADV 148 (241)
Q Consensus 69 ~~~~~VLElGcGtGl~sl~la~~g~~V~~tD~~~~~~~l~~~~~n~~~n~~~~~~~~l~w~~~~~~~~~~~fDlIl~~dv 148 (241)
.++.+|||||||+|..+..+++.+.+|+++|+++ +|++.++.... ...++.+...+......+..+.+||+|+++.+
T Consensus 36 ~~~~~vLDlGcG~G~~~~~la~~~~~v~giD~s~--~~l~~a~~~~~-~~~~i~~~~~d~~~~~~~~~~~~fD~I~~~~~ 112 (475)
T PLN02336 36 YEGKSVLELGAGIGRFTGELAKKAGQVIALDFIE--SVIKKNESING-HYKNVKFMCADVTSPDLNISDGSVDLIFSNWL 112 (475)
T ss_pred cCCCEEEEeCCCcCHHHHHHHhhCCEEEEEeCCH--HHHHHHHHHhc-cCCceEEEEecccccccCCCCCCEEEEehhhh
Confidence 4567999999999999999999988999999996 68875543211 12356666666654323344568999999999
Q ss_pred cCCCcc--HHHHHHHHHHHhhcCCCeEEEE
Q 026274 149 FYDASA--FDDLFATITYLLQSSPGSVFIT 176 (241)
Q Consensus 149 ly~~~~--~~~ll~~~~~lL~~~~~~~~~~ 176 (241)
+++..+ ...+++.+.++|+ ++|.+++
T Consensus 113 l~~l~~~~~~~~l~~~~r~Lk--~gG~l~~ 140 (475)
T PLN02336 113 LMYLSDKEVENLAERMVKWLK--VGGYIFF 140 (475)
T ss_pred HHhCCHHHHHHHHHHHHHhcC--CCeEEEE
Confidence 998765 6789999999998 5666554
|
|
| >PRK06922 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=99.20 E-value=1.6e-10 Score=109.28 Aligned_cols=105 Identities=15% Similarity=0.178 Sum_probs=79.6
Q ss_pred CCCCeEEEecCCCCHHHHHHHHh--CCEEEEEcCCCcHHHHHHHHHHHHHcCCceEEEEeecCCCCcCcCCCCCcEEEEc
Q 026274 69 FSGANVVELGAGTSLPGLVAAKV--GSNVTLTDDSNRIEVLKNMRRVCEMNKLNCRVMGLTWGFLDASIFDLNPNIILGA 146 (241)
Q Consensus 69 ~~~~~VLElGcGtGl~sl~la~~--g~~V~~tD~~~~~~~l~~~~~n~~~n~~~~~~~~l~w~~~~~~~~~~~fDlIl~~ 146 (241)
.++.+|||+|||+|..+..+++. +.+|+++|+++ .|++.++++...++.++.+...+..+......+++||+|+++
T Consensus 417 ~~g~rVLDIGCGTG~ls~~LA~~~P~~kVtGIDIS~--~MLe~Ararl~~~g~~ie~I~gDa~dLp~~fedeSFDvVVsn 494 (677)
T PRK06922 417 IKGDTIVDVGAGGGVMLDMIEEETEDKRIYGIDISE--NVIDTLKKKKQNEGRSWNVIKGDAINLSSSFEKESVDTIVYS 494 (677)
T ss_pred cCCCEEEEeCCCCCHHHHHHHHhCCCCEEEEEECCH--HHHHHHHHHhhhcCCCeEEEEcchHhCccccCCCCEEEEEEc
Confidence 46789999999999998888875 45999999995 699999988876666666666555443212345689999998
Q ss_pred CCcCC-------------CccHHHHHHHHHHHhhcCCCeEEEEE
Q 026274 147 DVFYD-------------ASAFDDLFATITYLLQSSPGSVFITT 177 (241)
Q Consensus 147 dvly~-------------~~~~~~ll~~~~~lL~~~~~~~~~~~ 177 (241)
.++++ ......+++.+.++|+ |||.+++.
T Consensus 495 ~vLH~L~syIp~~g~~f~~edl~kiLreI~RVLK--PGGrLII~ 536 (677)
T PRK06922 495 SILHELFSYIEYEGKKFNHEVIKKGLQSAYEVLK--PGGRIIIR 536 (677)
T ss_pred hHHHhhhhhcccccccccHHHHHHHHHHHHHHcC--CCcEEEEE
Confidence 87754 2456889999999998 56655554
|
|
| >PRK00312 pcm protein-L-isoaspartate O-methyltransferase; Reviewed | Back alignment and domain information |
|---|
Probab=99.17 E-value=9.6e-10 Score=91.60 Aligned_cols=114 Identities=14% Similarity=0.031 Sum_probs=80.8
Q ss_pred cHHHHHHHHHhccCCCCCCeEEEecCCCCHHHHHHHHhCCEEEEEcCCCcHHHHHHHHHHHHHcCC-ceEEEEeecCCCC
Q 026274 54 CSVILAEYVWQQRYRFSGANVVELGAGTSLPGLVAAKVGSNVTLTDDSNRIEVLKNMRRVCEMNKL-NCRVMGLTWGFLD 132 (241)
Q Consensus 54 ~s~~L~~~l~~~~~~~~~~~VLElGcGtGl~sl~la~~g~~V~~tD~~~~~~~l~~~~~n~~~n~~-~~~~~~l~w~~~~ 132 (241)
++..+..++.......++.+|||+|||+|..+..+++.+.+|+++|+++ ++++.+++|+..++. ++++...+..+..
T Consensus 62 ~~p~~~~~l~~~l~~~~~~~VLeiG~GsG~~t~~la~~~~~v~~vd~~~--~~~~~a~~~~~~~~~~~v~~~~~d~~~~~ 139 (212)
T PRK00312 62 SQPYMVARMTELLELKPGDRVLEIGTGSGYQAAVLAHLVRRVFSVERIK--TLQWEAKRRLKQLGLHNVSVRHGDGWKGW 139 (212)
T ss_pred CcHHHHHHHHHhcCCCCCCEEEEECCCccHHHHHHHHHhCEEEEEeCCH--HHHHHHHHHHHHCCCCceEEEECCcccCC
Confidence 3444445554444455778999999999999999998877999999995 799999999987766 4666665543321
Q ss_pred cCcCCCCCcEEEEcCCcCCCccHHHHHHHHHHHhhcCCCeEEEEEee
Q 026274 133 ASIFDLNPNIILGADVFYDASAFDDLFATITYLLQSSPGSVFITTYH 179 (241)
Q Consensus 133 ~~~~~~~fDlIl~~dvly~~~~~~~ll~~~~~lL~~~~~~~~~~~~~ 179 (241)
. ...+||+|++...+. .+.+.+.++|+ +||.+++...
T Consensus 140 ~--~~~~fD~I~~~~~~~------~~~~~l~~~L~--~gG~lv~~~~ 176 (212)
T PRK00312 140 P--AYAPFDRILVTAAAP------EIPRALLEQLK--EGGILVAPVG 176 (212)
T ss_pred C--cCCCcCEEEEccCch------hhhHHHHHhcC--CCcEEEEEEc
Confidence 1 125799999865443 33456778887 6677666654
|
|
| >PRK13942 protein-L-isoaspartate O-methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.16 E-value=9.6e-10 Score=91.83 Aligned_cols=114 Identities=14% Similarity=0.128 Sum_probs=80.4
Q ss_pred ccHHHHHHHHHhccCCCCCCeEEEecCCCCHHHHHHHHh-C--CEEEEEcCCCcHHHHHHHHHHHHHcCC-ceEEEEeec
Q 026274 53 PCSVILAEYVWQQRYRFSGANVVELGAGTSLPGLVAAKV-G--SNVTLTDDSNRIEVLKNMRRVCEMNKL-NCRVMGLTW 128 (241)
Q Consensus 53 ~~s~~L~~~l~~~~~~~~~~~VLElGcGtGl~sl~la~~-g--~~V~~tD~~~~~~~l~~~~~n~~~n~~-~~~~~~l~w 128 (241)
-++-.+..++.......++.+|||+|||+|..+..+++. + .+|+++|+++ ++++.+++|++.++. ++++...|.
T Consensus 59 ~~~p~~~~~~~~~l~~~~g~~VLdIG~GsG~~t~~la~~~~~~~~V~~vE~~~--~~~~~a~~~l~~~g~~~v~~~~gd~ 136 (212)
T PRK13942 59 ISAIHMVAIMCELLDLKEGMKVLEIGTGSGYHAAVVAEIVGKSGKVVTIERIP--ELAEKAKKTLKKLGYDNVEVIVGDG 136 (212)
T ss_pred eCcHHHHHHHHHHcCCCCcCEEEEECCcccHHHHHHHHhcCCCCEEEEEeCCH--HHHHHHHHHHHHcCCCCeEEEECCc
Confidence 344555555555555567889999999999999998886 3 4899999995 799999999988776 466665553
Q ss_pred CCCCcCcCCCCCcEEEEcCCcCCCccHHHHHHHHHHHhhcCCCeEEEEEe
Q 026274 129 GFLDASIFDLNPNIILGADVFYDASAFDDLFATITYLLQSSPGSVFITTY 178 (241)
Q Consensus 129 ~~~~~~~~~~~fDlIl~~dvly~~~~~~~ll~~~~~lL~~~~~~~~~~~~ 178 (241)
.... ....+||+|++...+.+ +.+.+.+.|+ +||.+++..
T Consensus 137 ~~~~--~~~~~fD~I~~~~~~~~------~~~~l~~~Lk--pgG~lvi~~ 176 (212)
T PRK13942 137 TLGY--EENAPYDRIYVTAAGPD------IPKPLIEQLK--DGGIMVIPV 176 (212)
T ss_pred ccCC--CcCCCcCEEEECCCccc------chHHHHHhhC--CCcEEEEEE
Confidence 3221 12358999998654432 3345667887 667776654
|
|
| >smart00650 rADc Ribosomal RNA adenine dimethylases | Back alignment and domain information |
|---|
Probab=99.16 E-value=2.6e-09 Score=85.91 Aligned_cols=110 Identities=15% Similarity=0.107 Sum_probs=72.6
Q ss_pred HHHhccCCCCCCeEEEecCCCCHHHHHHHHhCCEEEEEcCCCcHHHHHHHHHHHHHcCCceEEEEeecCCCCcCcCCCCC
Q 026274 61 YVWQQRYRFSGANVVELGAGTSLPGLVAAKVGSNVTLTDDSNRIEVLKNMRRVCEMNKLNCRVMGLTWGFLDASIFDLNP 140 (241)
Q Consensus 61 ~l~~~~~~~~~~~VLElGcGtGl~sl~la~~g~~V~~tD~~~~~~~l~~~~~n~~~n~~~~~~~~l~w~~~~~~~~~~~f 140 (241)
.+........+.+|||+|||+|.++..+++.+.+|+++|+++ .+++.+++|+.. ..++++...|..+... .+.+|
T Consensus 4 ~i~~~~~~~~~~~vLEiG~G~G~lt~~l~~~~~~v~~vE~~~--~~~~~~~~~~~~-~~~v~ii~~D~~~~~~--~~~~~ 78 (169)
T smart00650 4 KIVRAANLRPGDTVLEIGPGKGALTEELLERAARVTAIEIDP--RLAPRLREKFAA-ADNLTVIHGDALKFDL--PKLQP 78 (169)
T ss_pred HHHHhcCCCCcCEEEEECCCccHHHHHHHhcCCeEEEEECCH--HHHHHHHHHhcc-CCCEEEEECchhcCCc--cccCC
Confidence 333333445677999999999999999999988999999996 699999988854 2356666666655421 22369
Q ss_pred cEEEEcCCcCCCccHHHHHHHHHHHhhcCCCeEEEEEe
Q 026274 141 NIILGADVFYDASAFDDLFATITYLLQSSPGSVFITTY 178 (241)
Q Consensus 141 DlIl~~dvly~~~~~~~ll~~~~~lL~~~~~~~~~~~~ 178 (241)
|+|+++. .|+.. .+++..+......-+++++++-.
T Consensus 79 d~vi~n~-Py~~~--~~~i~~~l~~~~~~~~~~l~~q~ 113 (169)
T smart00650 79 YKVVGNL-PYNIS--TPILFKLLEEPPAFRDAVLMVQK 113 (169)
T ss_pred CEEEECC-CcccH--HHHHHHHHhcCCCcceEEEEEEH
Confidence 9998764 45532 33333333222122566666653
|
|
| >COG2265 TrmA SAM-dependent methyltransferases related to tRNA (uracil-5-)-methyltransferase [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=99.15 E-value=5.3e-10 Score=102.36 Aligned_cols=151 Identities=15% Similarity=0.135 Sum_probs=109.1
Q ss_pred cHHHHHHHHHhccCCCCCCeEEEecCCCCHHHHHHHHhCCEEEEEcCCCcHHHHHHHHHHHHHcCCc-eEEEEeecCCCC
Q 026274 54 CSVILAEYVWQQRYRFSGANVVELGAGTSLPGLVAAKVGSNVTLTDDSNRIEVLKNMRRVCEMNKLN-CRVMGLTWGFLD 132 (241)
Q Consensus 54 ~s~~L~~~l~~~~~~~~~~~VLElGcGtGl~sl~la~~g~~V~~tD~~~~~~~l~~~~~n~~~n~~~-~~~~~l~w~~~~ 132 (241)
.+..|..+........++.++||+-||.|.+|+.+|+...+|+++++++ ++++.+++|++.|++. +.+...+-.+..
T Consensus 277 ~~ekl~~~a~~~~~~~~~~~vlDlYCGvG~f~l~lA~~~~~V~gvEi~~--~aV~~A~~NA~~n~i~N~~f~~~~ae~~~ 354 (432)
T COG2265 277 VAEKLYETALEWLELAGGERVLDLYCGVGTFGLPLAKRVKKVHGVEISP--EAVEAAQENAAANGIDNVEFIAGDAEEFT 354 (432)
T ss_pred HHHHHHHHHHHHHhhcCCCEEEEeccCCChhhhhhcccCCEEEEEecCH--HHHHHHHHHHHHcCCCcEEEEeCCHHHHh
Confidence 3455666666655556778999999999999999999999999999995 7999999999999985 777766655543
Q ss_pred cCc-CCCCCcEEEEcCCcCCCccHHHHHHHHHHHhhcCCCeEEEEEeeccCchhHHHHHHHHcCCEEEEE--ecCCCCCC
Q 026274 133 ASI-FDLNPNIILGADVFYDASAFDDLFATITYLLQSSPGSVFITTYHNRSGHHLIEFLMVKWGLKCVKL--VDGFSFLP 209 (241)
Q Consensus 133 ~~~-~~~~fDlIl~~dvly~~~~~~~ll~~~~~lL~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~i--~~~~~~~p 209 (241)
... ....||+|+..++-- ...+.+++.+.++ ++..++|+++.+-........ +...|+.+..+ .|+|.+++
T Consensus 355 ~~~~~~~~~d~VvvDPPR~--G~~~~~lk~l~~~---~p~~IvYVSCNP~TlaRDl~~-L~~~gy~i~~v~~~DmFP~T~ 428 (432)
T COG2265 355 PAWWEGYKPDVVVVDPPRA--GADREVLKQLAKL---KPKRIVYVSCNPATLARDLAI-LASTGYEIERVQPFDMFPHTH 428 (432)
T ss_pred hhccccCCCCEEEECCCCC--CCCHHHHHHHHhc---CCCcEEEEeCCHHHHHHHHHH-HHhCCeEEEEEEEeccCCCcc
Confidence 322 124789999643322 1334666666655 477889998877554444444 35678777766 88888887
Q ss_pred ccc
Q 026274 210 HYK 212 (241)
Q Consensus 210 ~~~ 212 (241)
|.+
T Consensus 429 HvE 431 (432)
T COG2265 429 HVE 431 (432)
T ss_pred ccC
Confidence 764
|
|
| >KOG1271 consensus Methyltransferases [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.15 E-value=1.7e-09 Score=86.74 Aligned_cols=141 Identities=17% Similarity=0.217 Sum_probs=96.6
Q ss_pred ccHHHHHHHHHhccC---CCCCC-eEEEecCCCCHHHHHHHHhCC--EEEEEcCCCcHHHHHHHHHHHHHcCCc--eEEE
Q 026274 53 PCSVILAEYVWQQRY---RFSGA-NVVELGAGTSLPGLVAAKVGS--NVTLTDDSNRIEVLKNMRRVCEMNKLN--CRVM 124 (241)
Q Consensus 53 ~~s~~L~~~l~~~~~---~~~~~-~VLElGcGtGl~sl~la~~g~--~V~~tD~~~~~~~l~~~~~n~~~n~~~--~~~~ 124 (241)
++-..+.+|+..+.. ..+.. +|||||||.|.+-.-|++.|. +.+++|+++ ++++.|+..++.++.. ++++
T Consensus 46 ~ae~riv~wl~d~~~~~rv~~~A~~VlDLGtGNG~~L~~L~~egf~~~L~GvDYs~--~AV~LA~niAe~~~~~n~I~f~ 123 (227)
T KOG1271|consen 46 DAEERIVDWLKDLIVISRVSKQADRVLDLGTGNGHLLFQLAKEGFQSKLTGVDYSE--KAVELAQNIAERDGFSNEIRFQ 123 (227)
T ss_pred cHHHHHHHHHHhhhhhhhhcccccceeeccCCchHHHHHHHHhcCCCCccccccCH--HHHHHHHHHHHhcCCCcceeEE
Confidence 455677888876543 22333 899999999999999999887 599999996 6999988888888875 8999
Q ss_pred EeecCCCCcCcCCCCCcEEEEcCC---cCC-C----ccHHHHHHHHHHHhhcCCCeEEEEEeeccCchhHHHHHHHHcCC
Q 026274 125 GLTWGFLDASIFDLNPNIILGADV---FYD-A----SAFDDLFATITYLLQSSPGSVFITTYHNRSGHHLIEFLMVKWGL 196 (241)
Q Consensus 125 ~l~w~~~~~~~~~~~fDlIl~~dv---ly~-~----~~~~~ll~~~~~lL~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~ 196 (241)
++|..++ ..+..+||+|+--.+ +-- + .-+..-+..+.++|+ ++++|++...+..-.++.+. .+..||
T Consensus 124 q~DI~~~--~~~~~qfdlvlDKGT~DAisLs~d~~~~r~~~Y~d~v~~ll~--~~gifvItSCN~T~dELv~~-f~~~~f 198 (227)
T KOG1271|consen 124 QLDITDP--DFLSGQFDLVLDKGTLDAISLSPDGPVGRLVVYLDSVEKLLS--PGGIFVITSCNFTKDELVEE-FENFNF 198 (227)
T ss_pred EeeccCC--cccccceeEEeecCceeeeecCCCCcccceeeehhhHhhccC--CCcEEEEEecCccHHHHHHH-HhcCCe
Confidence 9988765 344568888863322 211 1 122445688999998 77877776444333333333 345666
Q ss_pred EEEE
Q 026274 197 KCVK 200 (241)
Q Consensus 197 ~~~~ 200 (241)
....
T Consensus 199 ~~~~ 202 (227)
T KOG1271|consen 199 EYLS 202 (227)
T ss_pred EEEE
Confidence 5543
|
|
| >COG2242 CobL Precorrin-6B methylase 2 [Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=99.14 E-value=3.1e-09 Score=85.96 Aligned_cols=124 Identities=18% Similarity=0.150 Sum_probs=89.3
Q ss_pred CCCCCCeEEEecCCCCHHHHHHHHhCC--EEEEEcCCCcHHHHHHHHHHHHHcCC-ceEEEEeecCCCCcCcCCC-CCcE
Q 026274 67 YRFSGANVVELGAGTSLPGLVAAKVGS--NVTLTDDSNRIEVLKNMRRVCEMNKL-NCRVMGLTWGFLDASIFDL-NPNI 142 (241)
Q Consensus 67 ~~~~~~~VLElGcGtGl~sl~la~~g~--~V~~tD~~~~~~~l~~~~~n~~~n~~-~~~~~~l~w~~~~~~~~~~-~fDl 142 (241)
...+|.+++|+|||||-+++.++..+. +|+++|.++ ++++.+++|++..+. ++.+...+.-+.. .+. +||.
T Consensus 31 ~~~~g~~l~DIGaGtGsi~iE~a~~~p~~~v~AIe~~~--~a~~~~~~N~~~fg~~n~~vv~g~Ap~~L---~~~~~~da 105 (187)
T COG2242 31 RPRPGDRLWDIGAGTGSITIEWALAGPSGRVIAIERDE--EALELIERNAARFGVDNLEVVEGDAPEAL---PDLPSPDA 105 (187)
T ss_pred CCCCCCEEEEeCCCccHHHHHHHHhCCCceEEEEecCH--HHHHHHHHHHHHhCCCcEEEEeccchHhh---cCCCCCCE
Confidence 445788999999999999999997654 899999996 799999999998875 4555544333222 222 6999
Q ss_pred EEEcCCcCCCccHHHHHHHHHHHhhcCCCeEEEEEeeccCchhHHHHHHHHcCC-EEEEE
Q 026274 143 ILGADVFYDASAFDDLFATITYLLQSSPGSVFITTYHNRSGHHLIEFLMVKWGL-KCVKL 201 (241)
Q Consensus 143 Il~~dvly~~~~~~~ll~~~~~lL~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~-~~~~i 201 (241)
|+..-- ..++.+++++...|+ +++.+++..-.-.........++++|+ +++.+
T Consensus 106 iFIGGg----~~i~~ile~~~~~l~--~ggrlV~naitlE~~~~a~~~~~~~g~~ei~~v 159 (187)
T COG2242 106 IFIGGG----GNIEEILEAAWERLK--PGGRLVANAITLETLAKALEALEQLGGREIVQV 159 (187)
T ss_pred EEECCC----CCHHHHHHHHHHHcC--cCCeEEEEeecHHHHHHHHHHHHHcCCceEEEE
Confidence 987644 688999999999998 566666554332222223334678888 66665
|
|
| >PRK14121 tRNA (guanine-N(7)-)-methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.14 E-value=2.2e-09 Score=96.67 Aligned_cols=107 Identities=14% Similarity=0.084 Sum_probs=79.9
Q ss_pred CCCeEEEecCCCCHHHHHHHHhC--CEEEEEcCCCcHHHHHHHHHHHHHcCC-ceEEEEeecCCCCcCcCCCCCcEEEEc
Q 026274 70 SGANVVELGAGTSLPGLVAAKVG--SNVTLTDDSNRIEVLKNMRRVCEMNKL-NCRVMGLTWGFLDASIFDLNPNIILGA 146 (241)
Q Consensus 70 ~~~~VLElGcGtGl~sl~la~~g--~~V~~tD~~~~~~~l~~~~~n~~~n~~-~~~~~~l~w~~~~~~~~~~~fDlIl~~ 146 (241)
.+..+||||||+|...+.+|+.. ..++|+|+++ .++..+.+++..+++ ++.+...|.........++++|.|+.+
T Consensus 122 ~~p~vLEIGcGsG~~ll~lA~~~P~~~~iGIEI~~--~~i~~a~~ka~~~gL~NV~~i~~DA~~ll~~~~~~s~D~I~ln 199 (390)
T PRK14121 122 QEKILIEIGFGSGRHLLYQAKNNPNKLFIGIEIHT--PSIEQVLKQIELLNLKNLLIINYDARLLLELLPSNSVEKIFVH 199 (390)
T ss_pred CCCeEEEEcCcccHHHHHHHHhCCCCCEEEEECCH--HHHHHHHHHHHHcCCCcEEEEECCHHHhhhhCCCCceeEEEEe
Confidence 45689999999999999999974 5899999995 699999999988876 577777776543333445789999876
Q ss_pred CCcCCCc------cHHHHHHHHHHHhhcCCCeEEEEEeec
Q 026274 147 DVFYDAS------AFDDLFATITYLLQSSPGSVFITTYHN 180 (241)
Q Consensus 147 dvly~~~------~~~~ll~~~~~lL~~~~~~~~~~~~~~ 180 (241)
-+..++. ..+.+++.+.++|+ +||.+.+....
T Consensus 200 FPdPW~KkrHRRlv~~~fL~e~~RvLk--pGG~l~l~TD~ 237 (390)
T PRK14121 200 FPVPWDKKPHRRVISEDFLNEALRVLK--PGGTLELRTDS 237 (390)
T ss_pred CCCCccccchhhccHHHHHHHHHHHcC--CCcEEEEEEEC
Confidence 4333322 12689999999998 56666665444
|
|
| >TIGR03840 TMPT_Se_Te thiopurine S-methyltransferase, Se/Te detoxification family | Back alignment and domain information |
|---|
Probab=99.13 E-value=8e-10 Score=92.37 Aligned_cols=119 Identities=17% Similarity=0.052 Sum_probs=81.0
Q ss_pred cHHHHHHHHHhccCCCCCCeEEEecCCCCHHHHHHHHhCCEEEEEcCCCcHHHHHHHHHHHHH-------------cCCc
Q 026274 54 CSVILAEYVWQQRYRFSGANVVELGAGTSLPGLVAAKVGSNVTLTDDSNRIEVLKNMRRVCEM-------------NKLN 120 (241)
Q Consensus 54 ~s~~L~~~l~~~~~~~~~~~VLElGcGtGl~sl~la~~g~~V~~tD~~~~~~~l~~~~~n~~~-------------n~~~ 120 (241)
....|.+++..... .++.+|||+|||.|.-++++|++|.+|+++|+|+ .+++.+...... .+.+
T Consensus 19 p~~~l~~~~~~l~~-~~~~rvLd~GCG~G~da~~LA~~G~~V~gvD~S~--~Ai~~~~~~~~~~~~~~~~~~~~~~~~~~ 95 (213)
T TIGR03840 19 VNPLLVKHWPALGL-PAGARVFVPLCGKSLDLAWLAEQGHRVLGVELSE--IAVEQFFAENGLTPTVTQQGEFTRYRAGN 95 (213)
T ss_pred CCHHHHHHHHhhCC-CCCCeEEEeCCCchhHHHHHHhCCCeEEEEeCCH--HHHHHHHHHcCCCcceeccccceeeecCc
Confidence 45566677654321 2567999999999999999999999999999996 588765331111 1234
Q ss_pred eEEEEeecCCCCcCcCCCCCcEEEEcCCcCCC--ccHHHHHHHHHHHhhcCCCe-EEEEEe
Q 026274 121 CRVMGLTWGFLDASIFDLNPNIILGADVFYDA--SAFDDLFATITYLLQSSPGS-VFITTY 178 (241)
Q Consensus 121 ~~~~~l~w~~~~~~~~~~~fDlIl~~dvly~~--~~~~~ll~~~~~lL~~~~~~-~~~~~~ 178 (241)
+++...|..+.... ...+||.|+-.-++.+. +..+..++.+.++|+ ||| ++++++
T Consensus 96 v~~~~~D~~~~~~~-~~~~fD~i~D~~~~~~l~~~~R~~~~~~l~~lLk--pgG~~ll~~~ 153 (213)
T TIGR03840 96 IEIFCGDFFALTAA-DLGPVDAVYDRAALIALPEEMRQRYAAHLLALLP--PGARQLLITL 153 (213)
T ss_pred eEEEEccCCCCCcc-cCCCcCEEEechhhccCCHHHHHHHHHHHHHHcC--CCCeEEEEEE
Confidence 55666665543221 12479999987776553 455678999999998 444 455554
|
Members of this family are thiopurine S-methyltransferase from a branch in which at least some member proteins can perform selenium methylation as a means to detoxify selenium, or perform a related detoxification of tellurium. Note that the EC number definition does not specify a particular thiopurine, but rather represents a class of activity. |
| >PRK13255 thiopurine S-methyltransferase; Reviewed | Back alignment and domain information |
|---|
Probab=99.12 E-value=3.6e-09 Score=88.78 Aligned_cols=111 Identities=14% Similarity=0.058 Sum_probs=74.8
Q ss_pred cHHHHHHHHHhccCCCCCCeEEEecCCCCHHHHHHHHhCCEEEEEcCCCcHHHHHHHHHHHHH-------------cCCc
Q 026274 54 CSVILAEYVWQQRYRFSGANVVELGAGTSLPGLVAAKVGSNVTLTDDSNRIEVLKNMRRVCEM-------------NKLN 120 (241)
Q Consensus 54 ~s~~L~~~l~~~~~~~~~~~VLElGcGtGl~sl~la~~g~~V~~tD~~~~~~~l~~~~~n~~~-------------n~~~ 120 (241)
..-.|.+|+.... ..++.+||++|||.|.-+++||++|.+|+++|+++ .+++.+...... ...+
T Consensus 22 p~~~L~~~~~~~~-~~~~~rvL~~gCG~G~da~~LA~~G~~V~avD~s~--~Ai~~~~~~~~l~~~~~~~~~~~~~~~~~ 98 (218)
T PRK13255 22 VNPLLQKYWPALA-LPAGSRVLVPLCGKSLDMLWLAEQGHEVLGVELSE--LAVEQFFAENGLTPQTRQSGEFEHYQAGE 98 (218)
T ss_pred CCHHHHHHHHhhC-CCCCCeEEEeCCCChHhHHHHHhCCCeEEEEccCH--HHHHHHHHHcCCCccccccccccccccCc
Confidence 3445556664321 13567999999999999999999999999999996 588765321100 1123
Q ss_pred eEEEEeecCCCCcCcCCCCCcEEEEcCCcCCC--ccHHHHHHHHHHHhhc
Q 026274 121 CRVMGLTWGFLDASIFDLNPNIILGADVFYDA--SAFDDLFATITYLLQS 168 (241)
Q Consensus 121 ~~~~~l~w~~~~~~~~~~~fDlIl~~dvly~~--~~~~~ll~~~~~lL~~ 168 (241)
+++...|..+.... ....||.|+-.-++.+. +.....++.+.++|++
T Consensus 99 v~~~~~D~~~l~~~-~~~~fd~v~D~~~~~~l~~~~R~~~~~~l~~lL~p 147 (218)
T PRK13255 99 ITIYCGDFFALTAA-DLADVDAVYDRAALIALPEEMRERYVQQLAALLPA 147 (218)
T ss_pred eEEEECcccCCCcc-cCCCeeEEEehHhHhhCCHHHHHHHHHHHHHHcCC
Confidence 45555554443211 12379999987776553 4567889999999984
|
|
| >PHA03411 putative methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.11 E-value=1.5e-09 Score=93.24 Aligned_cols=119 Identities=12% Similarity=0.081 Sum_probs=83.0
Q ss_pred CCeEEEecCCCCHHHHHHHHh--CCEEEEEcCCCcHHHHHHHHHHHHHcCCceEEEEeecCCCCcCcCCCCCcEEEEcCC
Q 026274 71 GANVVELGAGTSLPGLVAAKV--GSNVTLTDDSNRIEVLKNMRRVCEMNKLNCRVMGLTWGFLDASIFDLNPNIILGADV 148 (241)
Q Consensus 71 ~~~VLElGcGtGl~sl~la~~--g~~V~~tD~~~~~~~l~~~~~n~~~n~~~~~~~~l~w~~~~~~~~~~~fDlIl~~dv 148 (241)
+.+|||+|||+|.+++.+++. +.+|+++|+++ .|++.+++|.. ++.+...|..+. ....+||+|+++++
T Consensus 65 ~grVLDLGcGsGilsl~la~r~~~~~V~gVDisp--~al~~Ar~n~~----~v~~v~~D~~e~---~~~~kFDlIIsNPP 135 (279)
T PHA03411 65 TGKVLDLCAGIGRLSFCMLHRCKPEKIVCVELNP--EFARIGKRLLP----EAEWITSDVFEF---ESNEKFDVVISNPP 135 (279)
T ss_pred CCeEEEcCCCCCHHHHHHHHhCCCCEEEEEECCH--HHHHHHHHhCc----CCEEEECchhhh---cccCCCcEEEEcCC
Confidence 458999999999999988875 45999999995 69998888642 344444444332 12358999999999
Q ss_pred cCCCcc--------------------HHHHHHHHHHHhhcCCCeEEEEEeeccCc------hhHHHHHHHHcCCEEEE
Q 026274 149 FYDASA--------------------FDDLFATITYLLQSSPGSVFITTYHNRSG------HHLIEFLMVKWGLKCVK 200 (241)
Q Consensus 149 ly~~~~--------------------~~~ll~~~~~lL~~~~~~~~~~~~~~r~~------~~~~~~~~~~~g~~~~~ 200 (241)
+++... +..+++....+|++ +|.+++++..+.. ......++++.||....
T Consensus 136 F~~l~~~d~~~~~~~~GG~~g~~~l~~~~~l~~v~~~L~p--~G~~~~~yss~~~y~~sl~~~~y~~~l~~~g~~~~~ 211 (279)
T PHA03411 136 FGKINTTDTKDVFEYTGGEFEFKVMTLGQKFADVGYFIVP--TGSAGFAYSGRPYYDGTMKSNKYLKWSKQTGLVTYA 211 (279)
T ss_pred ccccCchhhhhhhhhccCccccccccHHHHHhhhHheecC--CceEEEEEeccccccccCCHHHHHHHHHhcCcEecC
Confidence 987321 35677777888874 4455555443322 34556678899998654
|
|
| >smart00138 MeTrc Methyltransferase, chemotaxis proteins | Back alignment and domain information |
|---|
Probab=99.11 E-value=7.3e-10 Score=95.57 Aligned_cols=104 Identities=13% Similarity=0.076 Sum_probs=75.2
Q ss_pred CCCeEEEecCCCCH----HHHHHHHh-------CCEEEEEcCCCcHHHHHHHHHHHH----HcC----------------
Q 026274 70 SGANVVELGAGTSL----PGLVAAKV-------GSNVTLTDDSNRIEVLKNMRRVCE----MNK---------------- 118 (241)
Q Consensus 70 ~~~~VLElGcGtGl----~sl~la~~-------g~~V~~tD~~~~~~~l~~~~~n~~----~n~---------------- 118 (241)
++.+|+|+|||||- +++.+++. +.+|++||+|+ +||+.+++.+- ..+
T Consensus 99 ~~~ri~d~GCgtGee~YslA~~l~e~~~~~~~~~~~I~g~Dis~--~~L~~Ar~~~y~~~~~~~~~~~~~~~yf~~~~~~ 176 (264)
T smart00138 99 RRVRIWSAGCSTGEEPYSLAMLLAETLPKAREPDVKILATDIDL--KALEKARAGIYPERELEDLPKALLARYFSRVEDK 176 (264)
T ss_pred CCEEEEeccccCChHHHHHHHHHHHHhhhcCCCCeEEEEEECCH--HHHHHHHcCCCCHHHHhcCCHHHHhhhEEeCCCe
Confidence 45799999999995 45666654 24899999995 69999987541 011
Q ss_pred --------CceEEEEeecCCCCcCcCCCCCcEEEEcCCcCCCc--cHHHHHHHHHHHhhcCCCeEEEEEee
Q 026274 119 --------LNCRVMGLTWGFLDASIFDLNPNIILGADVFYDAS--AFDDLFATITYLLQSSPGSVFITTYH 179 (241)
Q Consensus 119 --------~~~~~~~l~w~~~~~~~~~~~fDlIl~~dvly~~~--~~~~ll~~~~~lL~~~~~~~~~~~~~ 179 (241)
..+.+...+..+.. ...++||+|++..++.|.+ ....+++.+.++|+ |||.+++++.
T Consensus 177 ~~v~~~ir~~V~F~~~dl~~~~--~~~~~fD~I~crnvl~yf~~~~~~~~l~~l~~~L~--pGG~L~lg~~ 243 (264)
T smart00138 177 YRVKPELKERVRFAKHNLLAES--PPLGDFDLIFCRNVLIYFDEPTQRKLLNRFAEALK--PGGYLFLGHS 243 (264)
T ss_pred EEEChHHhCcCEEeeccCCCCC--CccCCCCEEEechhHHhCCHHHHHHHHHHHHHHhC--CCeEEEEECc
Confidence 13455555554432 2356899999999997764 56689999999998 7888888753
|
Methylates methyl-accepting chemotaxis proteins to form gamma-glutamyl methyl ester residues. |
| >TIGR02081 metW methionine biosynthesis protein MetW | Back alignment and domain information |
|---|
Probab=99.10 E-value=1.8e-09 Score=88.76 Aligned_cols=90 Identities=8% Similarity=0.004 Sum_probs=67.2
Q ss_pred CCCeEEEecCCCCHHHHHHHHh-CCEEEEEcCCCcHHHHHHHHHHHHHcCCceEEEEeecCCCCcCcCCCCCcEEEEcCC
Q 026274 70 SGANVVELGAGTSLPGLVAAKV-GSNVTLTDDSNRIEVLKNMRRVCEMNKLNCRVMGLTWGFLDASIFDLNPNIILGADV 148 (241)
Q Consensus 70 ~~~~VLElGcGtGl~sl~la~~-g~~V~~tD~~~~~~~l~~~~~n~~~n~~~~~~~~l~w~~~~~~~~~~~fDlIl~~dv 148 (241)
.+.+|||+|||+|..+..+++. +.+++++|+++ ++++.++. ++ +++...+..+...+..+.+||+|+++.+
T Consensus 13 ~~~~iLDiGcG~G~~~~~l~~~~~~~~~giD~s~--~~i~~a~~----~~--~~~~~~d~~~~l~~~~~~sfD~Vi~~~~ 84 (194)
T TIGR02081 13 PGSRVLDLGCGDGELLALLRDEKQVRGYGIEIDQ--DGVLACVA----RG--VNVIQGDLDEGLEAFPDKSFDYVILSQT 84 (194)
T ss_pred CCCEEEEeCCCCCHHHHHHHhccCCcEEEEeCCH--HHHHHHHH----cC--CeEEEEEhhhcccccCCCCcCEEEEhhH
Confidence 4678999999999998888764 55899999995 57776643 23 3455555543222233468999999999
Q ss_pred cCCCccHHHHHHHHHHHhh
Q 026274 149 FYDASAFDDLFATITYLLQ 167 (241)
Q Consensus 149 ly~~~~~~~ll~~~~~lL~ 167 (241)
++|..+...+++.+.+.++
T Consensus 85 l~~~~d~~~~l~e~~r~~~ 103 (194)
T TIGR02081 85 LQATRNPEEILDEMLRVGR 103 (194)
T ss_pred hHcCcCHHHHHHHHHHhCC
Confidence 9999999999888877754
|
This protein is found alongside MetX, of the enzyme that acylates homoserine as a first step toward methionine biosynthesis, in many species. It appears to act in methionine biosynthesis but is not fully characterized. |
| >PF05958 tRNA_U5-meth_tr: tRNA (Uracil-5-)-methyltransferase; InterPro: IPR010280 This family consists of (uracil-5-)-methyltransferases 2 | Back alignment and domain information |
|---|
Probab=99.10 E-value=6.6e-10 Score=99.64 Aligned_cols=152 Identities=15% Similarity=0.090 Sum_probs=97.8
Q ss_pred EEeccHHHHHHHHHhccCCCCCCeEEEecCCCCHHHHHHHHhCCEEEEEcCCCcHHHHHHHHHHHHHcCC-ceEEEEeec
Q 026274 50 FVWPCSVILAEYVWQQRYRFSGANVVELGAGTSLPGLVAAKVGSNVTLTDDSNRIEVLKNMRRVCEMNKL-NCRVMGLTW 128 (241)
Q Consensus 50 ~~W~~s~~L~~~l~~~~~~~~~~~VLElGcGtGl~sl~la~~g~~V~~tD~~~~~~~l~~~~~n~~~n~~-~~~~~~l~w 128 (241)
.-+.....|.+++.......++ +||||-||+|.+|+.+|+.+.+|+++|+++ ++++.+++|++.|++ ++++...+.
T Consensus 177 vN~~~~~~l~~~~~~~l~~~~~-~vlDlycG~G~fsl~la~~~~~V~gvE~~~--~av~~A~~Na~~N~i~n~~f~~~~~ 253 (352)
T PF05958_consen 177 VNPEQNEKLYEQALEWLDLSKG-DVLDLYCGVGTFSLPLAKKAKKVIGVEIVE--EAVEDARENAKLNGIDNVEFIRGDA 253 (352)
T ss_dssp SBHHHHHHHHHHHHHHCTT-TT-EEEEES-TTTCCHHHHHCCSSEEEEEES-H--HHHHHHHHHHHHTT--SEEEEE--S
T ss_pred CcHHHHHHHHHHHHHHhhcCCC-cEEEEeecCCHHHHHHHhhCCeEEEeeCCH--HHHHHHHHHHHHcCCCcceEEEeec
Confidence 3455666777777665554444 799999999999999999999999999995 799999999999998 467766544
Q ss_pred CCCCcC--------------cCCCCCcEEEEcCCcCCCccHHHHHHHHHHHhhcCCCeEEEEEeeccCchhHHHHHHHHc
Q 026274 129 GFLDAS--------------IFDLNPNIILGADVFYDASAFDDLFATITYLLQSSPGSVFITTYHNRSGHHLIEFLMVKW 194 (241)
Q Consensus 129 ~~~~~~--------------~~~~~fDlIl~~dvly~~~~~~~ll~~~~~lL~~~~~~~~~~~~~~r~~~~~~~~~~~~~ 194 (241)
.+.... .....+|+|+.-++--- ..+.+++.+. + ..-++|+++.+.........+.+
T Consensus 254 ~~~~~~~~~~r~~~~~~~~~~~~~~~d~vilDPPR~G--~~~~~~~~~~---~--~~~ivYvSCnP~tlaRDl~~L~~-- 324 (352)
T PF05958_consen 254 EDFAKALAKAREFNRLKGIDLKSFKFDAVILDPPRAG--LDEKVIELIK---K--LKRIVYVSCNPATLARDLKILKE-- 324 (352)
T ss_dssp HHCCCHHCCS-GGTTGGGS-GGCTTESEEEE---TT---SCHHHHHHHH---H--SSEEEEEES-HHHHHHHHHHHHC--
T ss_pred cchhHHHHhhHHHHhhhhhhhhhcCCCEEEEcCCCCC--chHHHHHHHh---c--CCeEEEEECCHHHHHHHHHHHhh--
Confidence 332110 11226898886443322 2234444443 2 35789999888766666666643
Q ss_pred CCEEEEE--ecCCCCCCcccc
Q 026274 195 GLKCVKL--VDGFSFLPHYKA 213 (241)
Q Consensus 195 g~~~~~i--~~~~~~~p~~~~ 213 (241)
||++..+ .|+|+.++|.+.
T Consensus 325 ~y~~~~v~~~DmFP~T~HvE~ 345 (352)
T PF05958_consen 325 GYKLEKVQPVDMFPQTHHVET 345 (352)
T ss_dssp CEEEEEEEEE-SSTTSS--EE
T ss_pred cCEEEEEEEeecCCCCCcEEE
Confidence 8888877 888888877754
|
1.1.35 from EC from bacteria, archaea and eukaryotes. A 5-methyluridine (m(5)U) residue at position 54 is a conserved feature of bacterial and eukaryotic tRNAs. The methylation of U54 is catalysed by the tRNA(m5U54)methyltransferase, which in Saccharomyces cerevisiae is encoded by the nonessential TRM2 gene. It is thought that tRNA modification enzymes might have a role in tRNA maturation not necessarily linked to their known catalytic activity []. This protein family also contains the 23SrRNA methyltransferases, first proposed to be RNA methyltransferases by homology to the TrmA family. The member from Escherichia coli has now been shown to act as the 23S RNA methyltransferase for the conserved U1939. The gene is now designated rumA and was previously designated ygcA [].; GO: 0008173 RNA methyltransferase activity, 0006396 RNA processing; PDB: 2VS1_A 2JJQ_A 2BH2_A 1UWV_A 3BT7_B. |
| >KOG2920 consensus Predicted methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.09 E-value=1e-10 Score=99.95 Aligned_cols=126 Identities=29% Similarity=0.474 Sum_probs=87.6
Q ss_pred CcceEEeccHHHHHHHHHhc---cCCCCCCeEEEecCCCCHHHHHHHHhCC-EEEEEcCCCcHHHHH-----HHHHHHHH
Q 026274 46 EYGLFVWPCSVILAEYVWQQ---RYRFSGANVVELGAGTSLPGLVAAKVGS-NVTLTDDSNRIEVLK-----NMRRVCEM 116 (241)
Q Consensus 46 ~~g~~~W~~s~~L~~~l~~~---~~~~~~~~VLElGcGtGl~sl~la~~g~-~V~~tD~~~~~~~l~-----~~~~n~~~ 116 (241)
..|+++|.++..|..++... .-.+.+++|||||||+|+.++.+...|+ .+.+.|++. +.++ ++..|...
T Consensus 89 EGg~k~wecS~dl~~~l~~e~~~~~~~~~k~vLELgCg~~Lp~i~~~~~~~~~~~fqD~na--~vl~~~t~pn~~~~~~~ 166 (282)
T KOG2920|consen 89 EGGLKLWECSVDLLPYLKEEIGAQMSFSGKRVLELGCGAALPGIFAFVKGAVSVHFQDFNA--EVLRLVTLPNILVNSHA 166 (282)
T ss_pred ecceEEeecHHHHHHHHHHHhhhheEecCceeEecCCcccccchhhhhhccceeeeEecch--hheeeecccceecchhh
Confidence 58899999999999999854 4567899999999999999999999995 899999994 5662 22222211
Q ss_pred c------CCceEEEEe---ecCCCCcCcCCCCCcEEEEcCCcCCCccHHHH-HHHHHHHhhcCCCeEEEEE
Q 026274 117 N------KLNCRVMGL---TWGFLDASIFDLNPNIILGADVFYDASAFDDL-FATITYLLQSSPGSVFITT 177 (241)
Q Consensus 117 n------~~~~~~~~l---~w~~~~~~~~~~~fDlIl~~dvly~~~~~~~l-l~~~~~lL~~~~~~~~~~~ 177 (241)
+ .....+..- ||.-.... ...||+|+++..+|.....+.+ ......+++ ++++++.+
T Consensus 167 ~~~~~e~~~~~~i~~s~l~dg~~~~t~--~~~ydlIlsSetiy~~~~~~~~~~~~r~~l~~--~D~~~~~a 233 (282)
T KOG2920|consen 167 GVEEKENHKVDEILNSLLSDGVFNHTE--RTHYDLILSSETIYSIDSLAVLYLLHRPCLLK--TDGVFYVA 233 (282)
T ss_pred hhhhhhcccceeccccccccchhhhcc--ccchhhhhhhhhhhCcchhhhhHhhhhhhcCC--ccchhhhh
Confidence 1 111122222 45211111 1389999999999999999888 455555544 56665554
|
|
| >PF07021 MetW: Methionine biosynthesis protein MetW; InterPro: IPR010743 This family consists of several bacterial and one archaeal methionine biosynthesis MetW proteins | Back alignment and domain information |
|---|
Probab=99.09 E-value=1.1e-09 Score=89.17 Aligned_cols=88 Identities=11% Similarity=0.084 Sum_probs=68.9
Q ss_pred CCCeEEEecCCCCHHHHHHHH-hCCEEEEEcCCCcHHHHHHHHHHHHHcCCceEEEEeecCCCCcCcCCCCCcEEEEcCC
Q 026274 70 SGANVVELGAGTSLPGLVAAK-VGSNVTLTDDSNRIEVLKNMRRVCEMNKLNCRVMGLTWGFLDASIFDLNPNIILGADV 148 (241)
Q Consensus 70 ~~~~VLElGcGtGl~sl~la~-~g~~V~~tD~~~~~~~l~~~~~n~~~n~~~~~~~~l~w~~~~~~~~~~~fDlIl~~dv 148 (241)
+|.+|||||||.|.+-..|.. ++.+..++|+++ +.+ .+ +-.+|++ +.+.|..+......+.+||+||.+.+
T Consensus 13 pgsrVLDLGCGdG~LL~~L~~~k~v~g~GvEid~--~~v---~~-cv~rGv~--Viq~Dld~gL~~f~d~sFD~VIlsqt 84 (193)
T PF07021_consen 13 PGSRVLDLGCGDGELLAYLKDEKQVDGYGVEIDP--DNV---AA-CVARGVS--VIQGDLDEGLADFPDQSFDYVILSQT 84 (193)
T ss_pred CCCEEEecCCCchHHHHHHHHhcCCeEEEEecCH--HHH---HH-HHHcCCC--EEECCHHHhHhhCCCCCccEEehHhH
Confidence 578999999999966666665 678999999996 222 22 2235665 57888887766677889999999999
Q ss_pred cCCCccHHHHHHHHHHH
Q 026274 149 FYDASAFDDLFATITYL 165 (241)
Q Consensus 149 ly~~~~~~~ll~~~~~l 165 (241)
+.+....+.+++.+.++
T Consensus 85 LQ~~~~P~~vL~EmlRV 101 (193)
T PF07021_consen 85 LQAVRRPDEVLEEMLRV 101 (193)
T ss_pred HHhHhHHHHHHHHHHHh
Confidence 99999999998887666
|
Biosynthesis of methionine from homoserine in Pseudomonas putida takes place in three steps. The first step is the acylation of homoserine to yield an acyl-L-homoserine. This reaction is catalysed by the products of the metXW genes and is equivalent to the first step in enterobacteria, Gram-positive bacteria and fungi, except that in these microorganisms the reaction is catalysed by a single polypeptide (the product of the metA gene in Escherichia coli and the met5 gene product in Neurospora crassa). In P. putida, as in Gram-positive bacteria and certain fungi, the second and third steps are a direct sulphydrylation that converts the O-acyl-L-homoserine into homocysteine and further methylation to yield methionine. The latter reaction can be mediated by either of the two methionine synthetases present in the cells []. |
| >TIGR02716 C20_methyl_CrtF C-20 methyltransferase BchU | Back alignment and domain information |
|---|
Probab=99.08 E-value=4.3e-09 Score=92.55 Aligned_cols=108 Identities=9% Similarity=0.081 Sum_probs=79.0
Q ss_pred HHHHhccCCCCCCeEEEecCCCCHHHHHHHHhC--CEEEEEcCCCcHHHHHHHHHHHHHcCCc--eEEEEeecCCCCcCc
Q 026274 60 EYVWQQRYRFSGANVVELGAGTSLPGLVAAKVG--SNVTLTDDSNRIEVLKNMRRVCEMNKLN--CRVMGLTWGFLDASI 135 (241)
Q Consensus 60 ~~l~~~~~~~~~~~VLElGcGtGl~sl~la~~g--~~V~~tD~~~~~~~l~~~~~n~~~n~~~--~~~~~l~w~~~~~~~ 135 (241)
+.+.......++.+|||+|||+|..++.+++.. .+++++|.. ++++.+++|+...+.. +++...|..+. +
T Consensus 139 ~~l~~~~~~~~~~~vlDiG~G~G~~~~~~~~~~p~~~~~~~D~~---~~~~~a~~~~~~~gl~~rv~~~~~d~~~~--~- 212 (306)
T TIGR02716 139 QLLLEEAKLDGVKKMIDVGGGIGDISAAMLKHFPELDSTILNLP---GAIDLVNENAAEKGVADRMRGIAVDIYKE--S- 212 (306)
T ss_pred HHHHHHcCCCCCCEEEEeCCchhHHHHHHHHHCCCCEEEEEecH---HHHHHHHHHHHhCCccceEEEEecCccCC--C-
Confidence 333333344456799999999999999999874 489999984 5999999999888763 56666655432 2
Q ss_pred CCCCCcEEEEcCCcCCCc--cHHHHHHHHHHHhhcCCCeEEEE
Q 026274 136 FDLNPNIILGADVFYDAS--AFDDLFATITYLLQSSPGSVFIT 176 (241)
Q Consensus 136 ~~~~fDlIl~~dvly~~~--~~~~ll~~~~~lL~~~~~~~~~~ 176 (241)
. ..+|+|+.+.++|+.. ....+++.+.+.|+ |||.+++
T Consensus 213 ~-~~~D~v~~~~~lh~~~~~~~~~il~~~~~~L~--pgG~l~i 252 (306)
T TIGR02716 213 Y-PEADAVLFCRILYSANEQLSTIMCKKAFDAMR--SGGRLLI 252 (306)
T ss_pred C-CCCCEEEeEhhhhcCChHHHHHHHHHHHHhcC--CCCEEEE
Confidence 2 2479999999988653 34679999999998 4454443
|
Members of this protein family are the S-adenosylmethionine-depenedent C-20 methyltransferase BchU, part of the pathway of bacteriochlorophyll c production in photosynthetic green sulfur bacteria. The position modified by this enzyme represents the difference between bacteriochlorophylls c and d; strains lacking this protein can only produced bacteriochlorophyll d. |
| >PRK11188 rrmJ 23S rRNA methyltransferase J; Provisional | Back alignment and domain information |
|---|
Probab=99.07 E-value=1.1e-08 Score=85.25 Aligned_cols=110 Identities=15% Similarity=0.056 Sum_probs=72.6
Q ss_pred HHHHHHHHHhccCCCCCCeEEEecCCCCHHHHHHHHhC---CEEEEEcCCCcHHHHHHHHHHHHHcCCceEEEEeecCCC
Q 026274 55 SVILAEYVWQQRYRFSGANVVELGAGTSLPGLVAAKVG---SNVTLTDDSNRIEVLKNMRRVCEMNKLNCRVMGLTWGFL 131 (241)
Q Consensus 55 s~~L~~~l~~~~~~~~~~~VLElGcGtGl~sl~la~~g---~~V~~tD~~~~~~~l~~~~~n~~~n~~~~~~~~l~w~~~ 131 (241)
.+.|.+.........++.+|||||||||.++..+++.. .+|+++|+++ |. +..++.+.+.|+.+.
T Consensus 36 ~~kl~~~~~~~~~~~~~~~VLDlG~GtG~~t~~l~~~~~~~~~V~aVDi~~---~~---------~~~~v~~i~~D~~~~ 103 (209)
T PRK11188 36 WFKLDEIQQSDKLFKPGMTVVDLGAAPGGWSQYAVTQIGDKGRVIACDILP---MD---------PIVGVDFLQGDFRDE 103 (209)
T ss_pred HHhhHHHHHHhccCCCCCEEEEEcccCCHHHHHHHHHcCCCceEEEEeccc---cc---------CCCCcEEEecCCCCh
Confidence 33343333333334567899999999999999888863 3899999985 21 112356777777653
Q ss_pred C------cCcCCCCCcEEEEcCCcCCCcc-----------HHHHHHHHHHHhhcCCCeEEEEEe
Q 026274 132 D------ASIFDLNPNIILGADVFYDASA-----------FDDLFATITYLLQSSPGSVFITTY 178 (241)
Q Consensus 132 ~------~~~~~~~fDlIl~~dvly~~~~-----------~~~ll~~~~~lL~~~~~~~~~~~~ 178 (241)
. ......+||+|+++.+.+.... ...+++.+.++|+ +||.+++..
T Consensus 104 ~~~~~i~~~~~~~~~D~V~S~~~~~~~g~~~~d~~~~~~~~~~~L~~~~~~Lk--pGG~~vi~~ 165 (209)
T PRK11188 104 LVLKALLERVGDSKVQVVMSDMAPNMSGTPAVDIPRAMYLVELALDMCRDVLA--PGGSFVVKV 165 (209)
T ss_pred HHHHHHHHHhCCCCCCEEecCCCCccCCChHHHHHHHHHHHHHHHHHHHHHcC--CCCEEEEEE
Confidence 2 1123468999998765544321 2568899999998 566666643
|
|
| >PRK10901 16S rRNA methyltransferase B; Provisional | Back alignment and domain information |
|---|
Probab=99.06 E-value=4.1e-09 Score=96.85 Aligned_cols=128 Identities=13% Similarity=0.062 Sum_probs=85.9
Q ss_pred CCCCeEEEecCCCCHHHHHHHHhC--CEEEEEcCCCcHHHHHHHHHHHHHcCCceEEEEeecCCCCcCcCCCCCcEEEEc
Q 026274 69 FSGANVVELGAGTSLPGLVAAKVG--SNVTLTDDSNRIEVLKNMRRVCEMNKLNCRVMGLTWGFLDASIFDLNPNIILGA 146 (241)
Q Consensus 69 ~~~~~VLElGcGtGl~sl~la~~g--~~V~~tD~~~~~~~l~~~~~n~~~n~~~~~~~~l~w~~~~~~~~~~~fDlIl~~ 146 (241)
.+|.+|||+|||+|..++.+++.+ .+|+++|+++ .+++.+++|++.++..+++...|..+........+||.|++.
T Consensus 243 ~~g~~VLDlgaG~G~~t~~la~~~~~~~v~a~D~s~--~~l~~~~~n~~~~g~~~~~~~~D~~~~~~~~~~~~fD~Vl~D 320 (427)
T PRK10901 243 QNGERVLDACAAPGGKTAHILELAPQAQVVALDIDA--QRLERVRENLQRLGLKATVIVGDARDPAQWWDGQPFDRILLD 320 (427)
T ss_pred CCCCEEEEeCCCCChHHHHHHHHcCCCEEEEEeCCH--HHHHHHHHHHHHcCCCeEEEEcCcccchhhcccCCCCEEEEC
Confidence 467899999999999999999874 4899999996 699999999999988777666665432111123579999965
Q ss_pred CCcCCC---------------c-------cHHHHHHHHHHHhhcCCCeEEEEEe---eccCchhHHHHHHHHc-CCEEEE
Q 026274 147 DVFYDA---------------S-------AFDDLFATITYLLQSSPGSVFITTY---HNRSGHHLIEFLMVKW-GLKCVK 200 (241)
Q Consensus 147 dvly~~---------------~-------~~~~ll~~~~~lL~~~~~~~~~~~~---~~r~~~~~~~~~~~~~-g~~~~~ 200 (241)
.+.... . ....+++...++|+ |||.++.+. ........+..+++++ +|.+..
T Consensus 321 ~Pcs~~G~~~~~p~~~~~~~~~~l~~l~~~q~~iL~~a~~~Lk--pGG~lvystcs~~~~Ene~~v~~~l~~~~~~~~~~ 398 (427)
T PRK10901 321 APCSATGVIRRHPDIKWLRRPEDIAALAALQSEILDALWPLLK--PGGTLLYATCSILPEENEQQIKAFLARHPDAELLD 398 (427)
T ss_pred CCCCcccccccCccccccCCHHHHHHHHHHHHHHHHHHHHhcC--CCCEEEEEeCCCChhhCHHHHHHHHHhCCCCEEec
Confidence 443211 1 12468888999998 445444332 2233334455555444 666543
|
|
| >KOG3010 consensus Methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.05 E-value=5e-10 Score=93.44 Aligned_cols=101 Identities=15% Similarity=0.135 Sum_probs=72.7
Q ss_pred eEEEecCCCCHHHHHHHHhCCEEEEEcCCCcHHHHHHHHHHHHHcCCceEEEEeecC-CCCcCcC--CCCCcEEEEcCCc
Q 026274 73 NVVELGAGTSLPGLVAAKVGSNVTLTDDSNRIEVLKNMRRVCEMNKLNCRVMGLTWG-FLDASIF--DLNPNIILGADVF 149 (241)
Q Consensus 73 ~VLElGcGtGl~sl~la~~g~~V~~tD~~~~~~~l~~~~~n~~~n~~~~~~~~l~w~-~~~~~~~--~~~fDlIl~~dvl 149 (241)
.++|+|||+|..++.+|..-.+|++||+++ +||+.+++.-....... ..... +...++. +++.|+|+++.++
T Consensus 36 ~a~DvG~G~Gqa~~~iae~~k~VIatD~s~--~mL~~a~k~~~~~y~~t---~~~ms~~~~v~L~g~e~SVDlI~~Aqa~ 110 (261)
T KOG3010|consen 36 LAWDVGTGNGQAARGIAEHYKEVIATDVSE--AMLKVAKKHPPVTYCHT---PSTMSSDEMVDLLGGEESVDLITAAQAV 110 (261)
T ss_pred eEEEeccCCCcchHHHHHhhhhheeecCCH--HHHHHhhcCCCcccccC---CccccccccccccCCCcceeeehhhhhH
Confidence 799999999999999999877999999996 69987765322111111 00111 1111222 5699999999999
Q ss_pred CCCccHHHHHHHHHHHhhcCCCeEEEEEee
Q 026274 150 YDASAFDDLFATITYLLQSSPGSVFITTYH 179 (241)
Q Consensus 150 y~~~~~~~ll~~~~~lL~~~~~~~~~~~~~ 179 (241)
++. +++.+.+.++++|++++|.+.+-.|.
T Consensus 111 HWF-dle~fy~~~~rvLRk~Gg~iavW~Y~ 139 (261)
T KOG3010|consen 111 HWF-DLERFYKEAYRVLRKDGGLIAVWNYN 139 (261)
T ss_pred Hhh-chHHHHHHHHHHcCCCCCEEEEEEcc
Confidence 886 67799999999999876666666665
|
|
| >cd02440 AdoMet_MTases S-adenosylmethionine-dependent methyltransferases (SAM or AdoMet-MTase), class I; AdoMet-MTases are enzymes that use S-adenosyl-L-methionine (SAM or AdoMet) as a substrate for methyltransfer, creating the product S-adenosyl-L-homocysteine (AdoHcy) | Back alignment and domain information |
|---|
Probab=99.04 E-value=2.3e-09 Score=76.76 Aligned_cols=100 Identities=25% Similarity=0.266 Sum_probs=75.9
Q ss_pred eEEEecCCCCHHHHHHHH-hCCEEEEEcCCCcHHHHHHHHHHHHHcC-CceEEEEeecCCCCcCcCCCCCcEEEEcCCcC
Q 026274 73 NVVELGAGTSLPGLVAAK-VGSNVTLTDDSNRIEVLKNMRRVCEMNK-LNCRVMGLTWGFLDASIFDLNPNIILGADVFY 150 (241)
Q Consensus 73 ~VLElGcGtGl~sl~la~-~g~~V~~tD~~~~~~~l~~~~~n~~~n~-~~~~~~~l~w~~~~~~~~~~~fDlIl~~dvly 150 (241)
+++|+|||+|..+..+++ .+.+++++|.++ ++++.++++...+. ..+++...++.+... ....+||+|+++.+++
T Consensus 1 ~ildig~G~G~~~~~~~~~~~~~~~~~d~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~d~i~~~~~~~ 77 (107)
T cd02440 1 RVLDLGCGTGALALALASGPGARVTGVDISP--VALELARKAAAALLADNVEVLKGDAEELPP-EADESFDVIISDPPLH 77 (107)
T ss_pred CeEEEcCCccHHHHHHhcCCCCEEEEEeCCH--HHHHHHHHHHhcccccceEEEEcChhhhcc-ccCCceEEEEEcccee
Confidence 589999999999988887 455999999996 57777775433332 356666666665432 1345899999999999
Q ss_pred C-CccHHHHHHHHHHHhhcCCCeEEEEE
Q 026274 151 D-ASAFDDLFATITYLLQSSPGSVFITT 177 (241)
Q Consensus 151 ~-~~~~~~ll~~~~~lL~~~~~~~~~~~ 177 (241)
+ ......+++.+.++++ ++|.+++.
T Consensus 78 ~~~~~~~~~l~~~~~~l~--~~g~~~~~ 103 (107)
T cd02440 78 HLVEDLARFLEEARRLLK--PGGVLVLT 103 (107)
T ss_pred ehhhHHHHHHHHHHHHcC--CCCEEEEE
Confidence 8 8899999999999997 56666654
|
There are at least five structurally distinct families of AdoMet-MTases, class I being the largest and most diverse. Within this class enzymes can be classified by different substrate specificities (small molecules, lipids, nucleic acids, etc.) and different target atoms for methylation (nitrogen, oxygen, carbon, sulfur, etc.). |
| >PRK14902 16S rRNA methyltransferase B; Provisional | Back alignment and domain information |
|---|
Probab=99.04 E-value=1.5e-08 Score=93.66 Aligned_cols=140 Identities=16% Similarity=0.152 Sum_probs=91.3
Q ss_pred ccHHHHHHHHHhccCCCCCCeEEEecCCCCHHHHHHHHh---CCEEEEEcCCCcHHHHHHHHHHHHHcCCc-eEEEEeec
Q 026274 53 PCSVILAEYVWQQRYRFSGANVVELGAGTSLPGLVAAKV---GSNVTLTDDSNRIEVLKNMRRVCEMNKLN-CRVMGLTW 128 (241)
Q Consensus 53 ~~s~~L~~~l~~~~~~~~~~~VLElGcGtGl~sl~la~~---g~~V~~tD~~~~~~~l~~~~~n~~~n~~~-~~~~~l~w 128 (241)
.++..++.++. ..++.+|||+|||+|..++.+++. +.+|+++|+++ ++++.+++|++.+++. +++...|+
T Consensus 237 ~~s~lv~~~l~----~~~g~~VLDlgaG~G~~t~~la~~~~~~~~v~avDi~~--~~l~~~~~n~~~~g~~~v~~~~~D~ 310 (444)
T PRK14902 237 ESSMLVAPALD----PKGGDTVLDACAAPGGKTTHIAELLKNTGKVVALDIHE--HKLKLIEENAKRLGLTNIETKALDA 310 (444)
T ss_pred hHHHHHHHHhC----CCCCCEEEEeCCCCCHHHHHHHHHhCCCCEEEEEeCCH--HHHHHHHHHHHHcCCCeEEEEeCCc
Confidence 34445554442 245679999999999999999885 34899999995 6999999999988863 56666666
Q ss_pred CCCCcCcCCCCCcEEEEcCCcCCCc---------------c-------HHHHHHHHHHHhhcCCCeEEE-EEe--eccCc
Q 026274 129 GFLDASIFDLNPNIILGADVFYDAS---------------A-------FDDLFATITYLLQSSPGSVFI-TTY--HNRSG 183 (241)
Q Consensus 129 ~~~~~~~~~~~fDlIl~~dvly~~~---------------~-------~~~ll~~~~~lL~~~~~~~~~-~~~--~~r~~ 183 (241)
.+.... ...+||+|++..+.+... . ...+++.+.++|+ +||.++ .++ .....
T Consensus 311 ~~~~~~-~~~~fD~Vl~D~Pcsg~G~~~~~p~~~~~~~~~~~~~l~~~q~~iL~~a~~~Lk--pGG~lvystcs~~~~En 387 (444)
T PRK14902 311 RKVHEK-FAEKFDKILVDAPCSGLGVIRRKPDIKYNKTKEDIESLQEIQLEILESVAQYLK--KGGILVYSTCTIEKEEN 387 (444)
T ss_pred ccccch-hcccCCEEEEcCCCCCCeeeccCcchhhcCCHHHHHHHHHHHHHHHHHHHHHcC--CCCEEEEEcCCCChhhh
Confidence 543222 225799999754432211 1 2457888889998 455444 322 22223
Q ss_pred hhHHHHHHHHc-CCEEEEE
Q 026274 184 HHLIEFLMVKW-GLKCVKL 201 (241)
Q Consensus 184 ~~~~~~~~~~~-g~~~~~i 201 (241)
...+..+++++ +|+...+
T Consensus 388 e~vv~~~l~~~~~~~~~~~ 406 (444)
T PRK14902 388 EEVIEAFLEEHPEFELVPL 406 (444)
T ss_pred HHHHHHHHHhCCCcEEecc
Confidence 33455556655 4776655
|
|
| >KOG1540 consensus Ubiquinone biosynthesis methyltransferase COQ5 [Coenzyme transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.03 E-value=7.5e-09 Score=87.14 Aligned_cols=129 Identities=12% Similarity=0.090 Sum_probs=94.1
Q ss_pred CCCCCCeEEEecCCCCHHHHHHHHh--------CCEEEEEcCCCcHHHHHHHHHHHHHcCCc----eEEEEeecCCCCcC
Q 026274 67 YRFSGANVVELGAGTSLPGLVAAKV--------GSNVTLTDDSNRIEVLKNMRRVCEMNKLN----CRVMGLTWGFLDAS 134 (241)
Q Consensus 67 ~~~~~~~VLElGcGtGl~sl~la~~--------g~~V~~tD~~~~~~~l~~~~~n~~~n~~~----~~~~~l~w~~~~~~ 134 (241)
...++.++||++||||-++.-+.+. ..+|++.|+|+ +||...++.+...++. ..+...|..+ .+
T Consensus 97 ~p~~~m~~lDvaGGTGDiaFril~~v~s~~~~~~~~V~v~Dinp--~mL~vgkqRa~~~~l~~~~~~~w~~~dAE~--Lp 172 (296)
T KOG1540|consen 97 GPGKGMKVLDVAGGTGDIAFRILRHVKSQFGDRESKVTVLDINP--HMLAVGKQRAKKRPLKASSRVEWVEGDAED--LP 172 (296)
T ss_pred CCCCCCeEEEecCCcchhHHHHHHhhccccCCCCceEEEEeCCH--HHHHHHHHHHhhcCCCcCCceEEEeCCccc--CC
Confidence 4567799999999999887777664 14899999995 7999888888665553 2333333333 24
Q ss_pred cCCCCCcEEEEcCCcCCCccHHHHHHHHHHHhhcCCCeEEEEEeeccCchhHHHHHHHHcCCEEEEE
Q 026274 135 IFDLNPNIILGADVFYDASAFDDLFATITYLLQSSPGSVFITTYHNRSGHHLIEFLMVKWGLKCVKL 201 (241)
Q Consensus 135 ~~~~~fDlIl~~dvly~~~~~~~ll~~~~~lL~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~i 201 (241)
..+.+||....+--|-+..+++..+++.+++|| |||.|++---.....+.+.++..++-|++..+
T Consensus 173 Fdd~s~D~yTiafGIRN~th~~k~l~EAYRVLK--pGGrf~cLeFskv~~~~l~~fy~~ysf~Vlpv 237 (296)
T KOG1540|consen 173 FDDDSFDAYTIAFGIRNVTHIQKALREAYRVLK--PGGRFSCLEFSKVENEPLKWFYDQYSFDVLPV 237 (296)
T ss_pred CCCCcceeEEEecceecCCCHHHHHHHHHHhcC--CCcEEEEEEccccccHHHHHHHHhhhhhhhch
Confidence 556799999999889999999999999999999 56655533222233345677788888877554
|
|
| >KOG4300 consensus Predicted methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.03 E-value=1.9e-09 Score=88.03 Aligned_cols=106 Identities=17% Similarity=0.117 Sum_probs=77.8
Q ss_pred eEEEecCCCCHHHHHHH-HhCCEEEEEcCCCcHHHHHHHHHHHHHcCC-ceE-EEEeecCCCCcCcCCCCCcEEEEcCCc
Q 026274 73 NVVELGAGTSLPGLVAA-KVGSNVTLTDDSNRIEVLKNMRRVCEMNKL-NCR-VMGLTWGFLDASIFDLNPNIILGADVF 149 (241)
Q Consensus 73 ~VLElGcGtGl~sl~la-~~g~~V~~tD~~~~~~~l~~~~~n~~~n~~-~~~-~~~l~w~~~~~~~~~~~fDlIl~~dvl 149 (241)
.|||+|||||..--+.- +.+.+|++.|-++ .|-+.+.+.+..+.. ++. ++..+-.+ ...+.+.++|+|++.=|+
T Consensus 79 ~vLEvgcGtG~Nfkfy~~~p~~svt~lDpn~--~mee~~~ks~~E~k~~~~~~fvva~ge~-l~~l~d~s~DtVV~TlvL 155 (252)
T KOG4300|consen 79 DVLEVGCGTGANFKFYPWKPINSVTCLDPNE--KMEEIADKSAAEKKPLQVERFVVADGEN-LPQLADGSYDTVVCTLVL 155 (252)
T ss_pred ceEEecccCCCCcccccCCCCceEEEeCCcH--HHHHHHHHHHhhccCcceEEEEeechhc-CcccccCCeeeEEEEEEE
Confidence 58999999995544443 2466999999996 588888888877643 343 44433333 234567899999999999
Q ss_pred CCCccHHHHHHHHHHHhhcCCCeEEEEEeeccCc
Q 026274 150 YDASAFDDLFATITYLLQSSPGSVFITTYHNRSG 183 (241)
Q Consensus 150 y~~~~~~~ll~~~~~lL~~~~~~~~~~~~~~r~~ 183 (241)
....+....++.+.++|+ |||.+++--|-+..
T Consensus 156 CSve~~~k~L~e~~rlLR--pgG~iifiEHva~~ 187 (252)
T KOG4300|consen 156 CSVEDPVKQLNEVRRLLR--PGGRIIFIEHVAGE 187 (252)
T ss_pred eccCCHHHHHHHHHHhcC--CCcEEEEEeccccc
Confidence 999999999999999998 56655554444433
|
|
| >PF03602 Cons_hypoth95: Conserved hypothetical protein 95; InterPro: IPR004398 This entry contains Ribosomal RNA small subunit methyltransferase D as well as the putative rRNA methyltransferase YlbH | Back alignment and domain information |
|---|
Probab=99.01 E-value=7.4e-10 Score=90.45 Aligned_cols=109 Identities=22% Similarity=0.285 Sum_probs=76.8
Q ss_pred CCCCeEEEecCCCCHHHHHHHHhCC-EEEEEcCCCcHHHHHHHHHHHHHcCCc--eEEEEeecCCCCcCc--CCCCCcEE
Q 026274 69 FSGANVVELGAGTSLPGLVAAKVGS-NVTLTDDSNRIEVLKNMRRVCEMNKLN--CRVMGLTWGFLDASI--FDLNPNII 143 (241)
Q Consensus 69 ~~~~~VLElGcGtGl~sl~la~~g~-~V~~tD~~~~~~~l~~~~~n~~~n~~~--~~~~~l~w~~~~~~~--~~~~fDlI 143 (241)
..|.++|||-||||.+|+.+.++|| +|+++|.+. .++..+++|++.-+.. +.+...|........ ...+||+|
T Consensus 41 ~~g~~vLDLFaGSGalGlEALSRGA~~v~fVE~~~--~a~~~i~~N~~~l~~~~~~~v~~~d~~~~l~~~~~~~~~fDiI 118 (183)
T PF03602_consen 41 LEGARVLDLFAGSGALGLEALSRGAKSVVFVEKNR--KAIKIIKKNLEKLGLEDKIRVIKGDAFKFLLKLAKKGEKFDII 118 (183)
T ss_dssp HTT-EEEETT-TTSHHHHHHHHTT-SEEEEEES-H--HHHHHHHHHHHHHT-GGGEEEEESSHHHHHHHHHHCTS-EEEE
T ss_pred cCCCeEEEcCCccCccHHHHHhcCCCeEEEEECCH--HHHHHHHHHHHHhCCCcceeeeccCHHHHHHhhcccCCCceEE
Confidence 6899999999999999999999998 899999995 7999999999987764 444444432222111 24689999
Q ss_pred EEcCCcCCCcc-HHHHHHHHH--HHhhcCCCeEEEEEeeccC
Q 026274 144 LGADVFYDASA-FDDLFATIT--YLLQSSPGSVFITTYHNRS 182 (241)
Q Consensus 144 l~~dvly~~~~-~~~ll~~~~--~lL~~~~~~~~~~~~~~r~ 182 (241)
++ |+-|.... ...+++.+. .+|+ +++++++.+..+.
T Consensus 119 fl-DPPY~~~~~~~~~l~~l~~~~~l~--~~~~ii~E~~~~~ 157 (183)
T PF03602_consen 119 FL-DPPYAKGLYYEELLELLAENNLLN--EDGLIIIEHSKKE 157 (183)
T ss_dssp EE---STTSCHHHHHHHHHHHHTTSEE--EEEEEEEEEETTS
T ss_pred EE-CCCcccchHHHHHHHHHHHCCCCC--CCEEEEEEecCCC
Confidence 85 56666665 488888877 5665 7889999887763
|
They methylate the guanosine in position 966 of 16S rRNA in the assembled 30S particle [].; GO: 0008168 methyltransferase activity, 0031167 rRNA methylation; PDB: 3P9N_A 2ESR_B 2IFT_A 1WS6_A 2FPO_B 2FHP_A. |
| >TIGR03438 probable methyltransferase | Back alignment and domain information |
|---|
Probab=99.01 E-value=6.4e-09 Score=91.37 Aligned_cols=109 Identities=16% Similarity=0.127 Sum_probs=75.2
Q ss_pred CCCeEEEecCCCCHHHHHHHHh---CCEEEEEcCCCcHHHHHHHHHHHHHcC--CceEEEEeecCCCCcCcCCC---CCc
Q 026274 70 SGANVVELGAGTSLPGLVAAKV---GSNVTLTDDSNRIEVLKNMRRVCEMNK--LNCRVMGLTWGFLDASIFDL---NPN 141 (241)
Q Consensus 70 ~~~~VLElGcGtGl~sl~la~~---g~~V~~tD~~~~~~~l~~~~~n~~~n~--~~~~~~~l~w~~~~~~~~~~---~fD 141 (241)
.+.+|||||||||..+..+++. +.+|+++|+|+ +||+.+++++.... +++.....|..+.. +.... ...
T Consensus 63 ~~~~iLELGcGtG~~t~~Ll~~l~~~~~~~~iDiS~--~mL~~a~~~l~~~~p~~~v~~i~gD~~~~~-~~~~~~~~~~~ 139 (301)
T TIGR03438 63 AGCELVELGSGSSRKTRLLLDALRQPARYVPIDISA--DALKESAAALAADYPQLEVHGICADFTQPL-ALPPEPAAGRR 139 (301)
T ss_pred CCCeEEecCCCcchhHHHHHHhhccCCeEEEEECCH--HHHHHHHHHHHhhCCCceEEEEEEcccchh-hhhcccccCCe
Confidence 5678999999999998888876 56999999996 79999988876543 45555555554321 11111 133
Q ss_pred -EEEEcCCcCCC--ccHHHHHHHHHHHhhcCCCeEEEEEeeccCc
Q 026274 142 -IILGADVFYDA--SAFDDLFATITYLLQSSPGSVFITTYHNRSG 183 (241)
Q Consensus 142 -lIl~~dvly~~--~~~~~ll~~~~~lL~~~~~~~~~~~~~~r~~ 183 (241)
+++..-++++. +....+++.+.+.|+ |||.++++......
T Consensus 140 ~~~~~gs~~~~~~~~e~~~~L~~i~~~L~--pgG~~lig~d~~~~ 182 (301)
T TIGR03438 140 LGFFPGSTIGNFTPEEAVAFLRRIRQLLG--PGGGLLIGVDLVKD 182 (301)
T ss_pred EEEEecccccCCCHHHHHHHHHHHHHhcC--CCCEEEEeccCCCC
Confidence 44444566654 456789999999998 67888876544433
|
This model represents a distinct set of uncharacterized proteins found in the bacteria. Analysis by PSI-BLAST shows remote sequence homology to methyltransferases |
| >PRK11727 23S rRNA mA1618 methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=98.98 E-value=2e-08 Score=88.67 Aligned_cols=82 Identities=16% Similarity=0.111 Sum_probs=59.1
Q ss_pred CCCeEEEecCCCCHHHHHHHHh--CCEEEEEcCCCcHHHHHHHHHHHHHc-CCc--eEEEE-eecCCCCcCc--CCCCCc
Q 026274 70 SGANVVELGAGTSLPGLVAAKV--GSNVTLTDDSNRIEVLKNMRRVCEMN-KLN--CRVMG-LTWGFLDASI--FDLNPN 141 (241)
Q Consensus 70 ~~~~VLElGcGtGl~sl~la~~--g~~V~~tD~~~~~~~l~~~~~n~~~n-~~~--~~~~~-l~w~~~~~~~--~~~~fD 141 (241)
.+.++||||||+|.+...++.. +.++++||+++ .+++.+++|++.| ++. +.+.. -+-.+..... ..++||
T Consensus 114 ~~~~vLDIGtGag~I~~lLa~~~~~~~~~atDId~--~Al~~A~~Nv~~Np~l~~~I~~~~~~~~~~i~~~i~~~~~~fD 191 (321)
T PRK11727 114 ANVRVLDIGVGANCIYPLIGVHEYGWRFVGSDIDP--QALASAQAIISANPGLNGAIRLRLQKDSKAIFKGIIHKNERFD 191 (321)
T ss_pred CCceEEEecCCccHHHHHHHhhCCCCEEEEEeCCH--HHHHHHHHHHHhccCCcCcEEEEEccchhhhhhcccccCCceE
Confidence 4578999999999777666654 66999999995 7999999999999 664 33322 1212211111 245899
Q ss_pred EEEEcCCcCCCc
Q 026274 142 IILGADVFYDAS 153 (241)
Q Consensus 142 lIl~~dvly~~~ 153 (241)
+|++++++|...
T Consensus 192 livcNPPf~~s~ 203 (321)
T PRK11727 192 ATLCNPPFHASA 203 (321)
T ss_pred EEEeCCCCcCcc
Confidence 999999988654
|
|
| >PHA03412 putative methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=98.98 E-value=5.3e-09 Score=88.03 Aligned_cols=96 Identities=13% Similarity=0.115 Sum_probs=68.8
Q ss_pred CCCeEEEecCCCCHHHHHHHHh-----CCEEEEEcCCCcHHHHHHHHHHHHHcCCceEEEEeecCCCCcCcCCCCCcEEE
Q 026274 70 SGANVVELGAGTSLPGLVAAKV-----GSNVTLTDDSNRIEVLKNMRRVCEMNKLNCRVMGLTWGFLDASIFDLNPNIIL 144 (241)
Q Consensus 70 ~~~~VLElGcGtGl~sl~la~~-----g~~V~~tD~~~~~~~l~~~~~n~~~n~~~~~~~~l~w~~~~~~~~~~~fDlIl 144 (241)
.+.+|||+|||+|.+++.+++. ..+|+++|+++ .+++.+++|.. .+.+...|.... ..+.+||+||
T Consensus 49 ~~grVLDlG~GSG~Lalala~~~~~~~~~~V~aVEID~--~Al~~Ar~n~~----~~~~~~~D~~~~---~~~~~FDlII 119 (241)
T PHA03412 49 TSGSVVDLCAGIGGLSFAMVHMMMYAKPREIVCVELNH--TYYKLGKRIVP----EATWINADALTT---EFDTLFDMAI 119 (241)
T ss_pred CCCEEEEccChHHHHHHHHHHhcccCCCcEEEEEECCH--HHHHHHHhhcc----CCEEEEcchhcc---cccCCccEEE
Confidence 4679999999999999999874 34899999996 69999998763 244444444322 1345899999
Q ss_pred EcCCcCCCc------------cHHHHHHHHHHHhhcCCCeEEEEE
Q 026274 145 GADVFYDAS------------AFDDLFATITYLLQSSPGSVFITT 177 (241)
Q Consensus 145 ~~dvly~~~------------~~~~ll~~~~~lL~~~~~~~~~~~ 177 (241)
++++++... ....++....++++ +|+. +++
T Consensus 120 sNPPY~~~~~~d~~ar~~g~~~~~~li~~A~~Ll~--~G~~-ILP 161 (241)
T PHA03412 120 SNPPFGKIKTSDFKGKYTGAEFEYKVIERASQIAR--QGTF-IIP 161 (241)
T ss_pred ECCCCCCccccccCCcccccHHHHHHHHHHHHHcC--CCEE-EeC
Confidence 999988432 25567888888765 5554 443
|
|
| >PLN03075 nicotianamine synthase; Provisional | Back alignment and domain information |
|---|
Probab=98.97 E-value=1.3e-08 Score=88.49 Aligned_cols=103 Identities=14% Similarity=0.071 Sum_probs=78.4
Q ss_pred CCCeEEEecCCCC-HHHHHHHHh---CCEEEEEcCCCcHHHHHHHHHHHHH-cCC--ceEEEEeecCCCCcCcCCCCCcE
Q 026274 70 SGANVVELGAGTS-LPGLVAAKV---GSNVTLTDDSNRIEVLKNMRRVCEM-NKL--NCRVMGLTWGFLDASIFDLNPNI 142 (241)
Q Consensus 70 ~~~~VLElGcGtG-l~sl~la~~---g~~V~~tD~~~~~~~l~~~~~n~~~-n~~--~~~~~~l~w~~~~~~~~~~~fDl 142 (241)
.+++|+|+|||.| +.++.+++. +.+++++|+++ ++++.+++++.. .++ .++|...|..+... ...+||+
T Consensus 123 ~p~~VldIGcGpgpltaiilaa~~~p~~~~~giD~d~--~ai~~Ar~~~~~~~gL~~rV~F~~~Da~~~~~--~l~~FDl 198 (296)
T PLN03075 123 VPTKVAFVGSGPLPLTSIVLAKHHLPTTSFHNFDIDP--SANDVARRLVSSDPDLSKRMFFHTADVMDVTE--SLKEYDV 198 (296)
T ss_pred CCCEEEEECCCCcHHHHHHHHHhcCCCCEEEEEeCCH--HHHHHHHHHhhhccCccCCcEEEECchhhccc--ccCCcCE
Confidence 6789999999955 767777653 34899999995 799999999864 443 47777777655321 1357999
Q ss_pred EEEcCCcCC-CccHHHHHHHHHHHhhcCCCeEEEEEe
Q 026274 143 ILGADVFYD-ASAFDDLFATITYLLQSSPGSVFITTY 178 (241)
Q Consensus 143 Il~~dvly~-~~~~~~ll~~~~~lL~~~~~~~~~~~~ 178 (241)
|++.-++|. .+..+.+++.+.+.|+ |||.+++..
T Consensus 199 VF~~ALi~~dk~~k~~vL~~l~~~Lk--PGG~Lvlr~ 233 (296)
T PLN03075 199 VFLAALVGMDKEEKVKVIEHLGKHMA--PGALLMLRS 233 (296)
T ss_pred EEEecccccccccHHHHHHHHHHhcC--CCcEEEEec
Confidence 999944444 3899999999999998 778887774
|
|
| >PTZ00146 fibrillarin; Provisional | Back alignment and domain information |
|---|
Probab=98.97 E-value=3.7e-08 Score=85.50 Aligned_cols=150 Identities=15% Similarity=0.097 Sum_probs=92.0
Q ss_pred cceEEeccHH-HHHHHHHhc---cCCCCCCeEEEecCCCCHHHHHHHHh-C--CEEEEEcCCCcHHHHHHHHHHHHHcCC
Q 026274 47 YGLFVWPCSV-ILAEYVWQQ---RYRFSGANVVELGAGTSLPGLVAAKV-G--SNVTLTDDSNRIEVLKNMRRVCEMNKL 119 (241)
Q Consensus 47 ~g~~~W~~s~-~L~~~l~~~---~~~~~~~~VLElGcGtGl~sl~la~~-g--~~V~~tD~~~~~~~l~~~~~n~~~n~~ 119 (241)
.-.++|.--. .|+.-|... ....++.+|||||||+|..+..+|.. + ..|+++|+++ .|++.+...+... .
T Consensus 105 ~eyR~w~p~rSKlaa~i~~g~~~l~IkpG~~VLDLGaG~G~~t~~lAdiVG~~G~VyAVD~s~--r~~~dLl~~ak~r-~ 181 (293)
T PTZ00146 105 IEYRVWNPFRSKLAAAIIGGVANIPIKPGSKVLYLGAASGTTVSHVSDLVGPEGVVYAVEFSH--RSGRDLTNMAKKR-P 181 (293)
T ss_pred ceeeeeCCcccHHHHHHHCCcceeccCCCCEEEEeCCcCCHHHHHHHHHhCCCCEEEEEECcH--HHHHHHHHHhhhc-C
Confidence 4489997532 344344322 23457889999999999999999986 3 3799999995 5665554433321 2
Q ss_pred ceEEEEeecCCCC-cCcCCCCCcEEEEcCCcCCCccHHHHHHHHHHHhhcCCCeEEEEEeeccCch------hHH---HH
Q 026274 120 NCRVMGLTWGFLD-ASIFDLNPNIILGADVFYDASAFDDLFATITYLLQSSPGSVFITTYHNRSGH------HLI---EF 189 (241)
Q Consensus 120 ~~~~~~l~w~~~~-~~~~~~~fDlIl~~dvly~~~~~~~ll~~~~~lL~~~~~~~~~~~~~~r~~~------~~~---~~ 189 (241)
++.+...|..... ......++|+|++.- ..+.....++..+.++|+ +++.|++....+... ..+ ..
T Consensus 182 NI~~I~~Da~~p~~y~~~~~~vDvV~~Dv--a~pdq~~il~~na~r~LK--pGG~~vI~ika~~id~g~~pe~~f~~ev~ 257 (293)
T PTZ00146 182 NIVPIIEDARYPQKYRMLVPMVDVIFADV--AQPDQARIVALNAQYFLK--NGGHFIISIKANCIDSTAKPEVVFASEVQ 257 (293)
T ss_pred CCEEEECCccChhhhhcccCCCCEEEEeC--CCcchHHHHHHHHHHhcc--CCCEEEEEEeccccccCCCHHHHHHHHHH
Confidence 3444444443221 011224799998654 245566677778999998 556666554433321 111 23
Q ss_pred HHHHcCCEEEEEec
Q 026274 190 LMVKWGLKCVKLVD 203 (241)
Q Consensus 190 ~~~~~g~~~~~i~~ 203 (241)
.+++.||+.....+
T Consensus 258 ~L~~~GF~~~e~v~ 271 (293)
T PTZ00146 258 KLKKEGLKPKEQLT 271 (293)
T ss_pred HHHHcCCceEEEEe
Confidence 46788999887743
|
|
| >PLN02781 Probable caffeoyl-CoA O-methyltransferase | Back alignment and domain information |
|---|
Probab=98.97 E-value=4.3e-09 Score=89.25 Aligned_cols=104 Identities=12% Similarity=0.069 Sum_probs=76.5
Q ss_pred CCCCCCeEEEecCCCCHHHHHHHHh---CCEEEEEcCCCcHHHHHHHHHHHHHcCCc--eEEEEeecCCCCcCc----CC
Q 026274 67 YRFSGANVVELGAGTSLPGLVAAKV---GSNVTLTDDSNRIEVLKNMRRVCEMNKLN--CRVMGLTWGFLDASI----FD 137 (241)
Q Consensus 67 ~~~~~~~VLElGcGtGl~sl~la~~---g~~V~~tD~~~~~~~l~~~~~n~~~n~~~--~~~~~l~w~~~~~~~----~~ 137 (241)
...+.++|||+|||+|..++.+++. +.+|+++|+++ ++++.+++|++.+++. +++...++.+....+ ..
T Consensus 65 ~~~~~~~vLEiGt~~G~s~l~la~~~~~~g~v~tiD~d~--~~~~~A~~n~~~~gl~~~i~~~~gda~~~L~~l~~~~~~ 142 (234)
T PLN02781 65 KIMNAKNTLEIGVFTGYSLLTTALALPEDGRITAIDIDK--EAYEVGLEFIKKAGVDHKINFIQSDALSALDQLLNNDPK 142 (234)
T ss_pred HHhCCCEEEEecCcccHHHHHHHHhCCCCCEEEEEECCH--HHHHHHHHHHHHcCCCCcEEEEEccHHHHHHHHHhCCCC
Confidence 3456789999999999988888764 34999999995 7999999999999874 566666654432211 13
Q ss_pred CCCcEEEEcCCcCCCccHHHHHHHHHHHhhcCCCeEEEEE
Q 026274 138 LNPNIILGADVFYDASAFDDLFATITYLLQSSPGSVFITT 177 (241)
Q Consensus 138 ~~fDlIl~~dvly~~~~~~~ll~~~~~lL~~~~~~~~~~~ 177 (241)
.+||+|+.. . ..+....+++.+.++|+ +||++++.
T Consensus 143 ~~fD~VfiD-a--~k~~y~~~~~~~~~ll~--~GG~ii~d 177 (234)
T PLN02781 143 PEFDFAFVD-A--DKPNYVHFHEQLLKLVK--VGGIIAFD 177 (234)
T ss_pred CCCCEEEEC-C--CHHHHHHHHHHHHHhcC--CCeEEEEE
Confidence 589999863 2 12456678888889998 67777764
|
|
| >COG2518 Pcm Protein-L-isoaspartate carboxylmethyltransferase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=98.96 E-value=4.3e-09 Score=86.78 Aligned_cols=146 Identities=16% Similarity=0.115 Sum_probs=94.0
Q ss_pred cceEEEEeecCCCCCCceEEEEeccCcCCcceEEeccHHHHHHHHHhccCCCCCCeEEEecCCCCHHHHHHHHhCCEEEE
Q 026274 18 MTTVSQHYFVDESDKPSFSIAIIENMKEEYGLFVWPCSVILAEYVWQQRYRFSGANVVELGAGTSLPGLVAAKVGSNVTL 97 (241)
Q Consensus 18 ~~~~~~~~f~~~~~~~~~~i~i~~~~~~~~g~~~W~~s~~L~~~l~~~~~~~~~~~VLElGcGtGl~sl~la~~g~~V~~ 97 (241)
|..+.|+.|-+.. +.=.-..++.-..|.-.|-++-.+...+.......++.+|||||||+|..+-.+|+...+|+.
T Consensus 24 ~~~vPRe~FVp~~----~~~~AY~d~~lpi~~gqtis~P~~vA~m~~~L~~~~g~~VLEIGtGsGY~aAvla~l~~~V~s 99 (209)
T COG2518 24 FLAVPRELFVPAA----YKHLAYEDRALPIGCGQTISAPHMVARMLQLLELKPGDRVLEIGTGSGYQAAVLARLVGRVVS 99 (209)
T ss_pred HHhCCHHhccCch----hhcccccCCcccCCCCceecCcHHHHHHHHHhCCCCCCeEEEECCCchHHHHHHHHHhCeEEE
Confidence 4455666665532 111112222233444455555555555555556678899999999999999999999889999
Q ss_pred EcCCCcHHHHHHHHHHHHHcCC-ceEEEEeecCCCCcCcCCCCCcEEEEcCCcCCCccHHHHHHHHHHHhhcCCCeEEEE
Q 026274 98 TDDSNRIEVLKNMRRVCEMNKL-NCRVMGLTWGFLDASIFDLNPNIILGADVFYDASAFDDLFATITYLLQSSPGSVFIT 176 (241)
Q Consensus 98 tD~~~~~~~l~~~~~n~~~n~~-~~~~~~l~w~~~~~~~~~~~fDlIl~~dvly~~~~~~~ll~~~~~lL~~~~~~~~~~ 176 (241)
+|..+ ++.+.+++|.+..+. ++.+...|-.....+ ..+||.|+.+-..- .+-+.+.+.|+ +||..++
T Consensus 100 iEr~~--~L~~~A~~~L~~lg~~nV~v~~gDG~~G~~~--~aPyD~I~Vtaaa~------~vP~~Ll~QL~--~gGrlv~ 167 (209)
T COG2518 100 IERIE--ELAEQARRNLETLGYENVTVRHGDGSKGWPE--EAPYDRIIVTAAAP------EVPEALLDQLK--PGGRLVI 167 (209)
T ss_pred EEEcH--HHHHHHHHHHHHcCCCceEEEECCcccCCCC--CCCcCEEEEeeccC------CCCHHHHHhcc--cCCEEEE
Confidence 99995 699999999998887 666665553322111 24899998643332 23344556676 5666665
Q ss_pred Eee
Q 026274 177 TYH 179 (241)
Q Consensus 177 ~~~ 179 (241)
+..
T Consensus 168 PvG 170 (209)
T COG2518 168 PVG 170 (209)
T ss_pred EEc
Confidence 544
|
|
| >TIGR00438 rrmJ cell division protein FtsJ | Back alignment and domain information |
|---|
Probab=98.96 E-value=8.4e-08 Score=78.43 Aligned_cols=108 Identities=15% Similarity=0.096 Sum_probs=70.0
Q ss_pred HHHHHHHHhccCCCCCCeEEEecCCCCHHHHHHHHhC---CEEEEEcCCCcHHHHHHHHHHHHHcCCceEEEEeecCCCC
Q 026274 56 VILAEYVWQQRYRFSGANVVELGAGTSLPGLVAAKVG---SNVTLTDDSNRIEVLKNMRRVCEMNKLNCRVMGLTWGFLD 132 (241)
Q Consensus 56 ~~L~~~l~~~~~~~~~~~VLElGcGtGl~sl~la~~g---~~V~~tD~~~~~~~l~~~~~n~~~n~~~~~~~~l~w~~~~ 132 (241)
+.+.+.........++.+|||+|||+|.++..+++.. .+|+++|+++. + . ..++.+...++.+..
T Consensus 18 ~~~~~~~~~~~~i~~g~~VLDiG~GtG~~~~~l~~~~~~~~~v~~vDis~~--~--------~--~~~i~~~~~d~~~~~ 85 (188)
T TIGR00438 18 FKLLQLNQKFKLIKPGDTVLDLGAAPGGWSQVAVEQVGGKGRVIAVDLQPM--K--------P--IENVDFIRGDFTDEE 85 (188)
T ss_pred HHHHHHHHHhcccCCCCEEEEecCCCCHHHHHHHHHhCCCceEEEEecccc--c--------c--CCCceEEEeeCCChh
Confidence 3455555555566688999999999999988888763 37999999962 2 1 123455666665421
Q ss_pred c------CcCCCCCcEEEEcCCcC-----CCc------cHHHHHHHHHHHhhcCCCeEEEEE
Q 026274 133 A------SIFDLNPNIILGADVFY-----DAS------AFDDLFATITYLLQSSPGSVFITT 177 (241)
Q Consensus 133 ~------~~~~~~fDlIl~~dvly-----~~~------~~~~ll~~~~~lL~~~~~~~~~~~ 177 (241)
. .....+||+|++.-..+ ... ..+.+++.+.++|+ +||.+++.
T Consensus 86 ~~~~l~~~~~~~~~D~V~~~~~~~~~g~~~~~~~~~~~~~~~~l~~~~~~Lk--pgG~lvi~ 145 (188)
T TIGR00438 86 VLNKIRERVGDDKVDVVMSDAAPNISGYWDIDHLRSIDLVELALDIAKEVLK--PKGNFVVK 145 (188)
T ss_pred HHHHHHHHhCCCCccEEEcCCCCCCCCCccccHHHHHHHHHHHHHHHHHHcc--CCCEEEEE
Confidence 0 12245799999753321 111 23678899999998 55555553
|
|
| >TIGR00478 tly hemolysin TlyA family protein | Back alignment and domain information |
|---|
Probab=98.95 E-value=4.2e-09 Score=88.77 Aligned_cols=107 Identities=15% Similarity=0.061 Sum_probs=74.0
Q ss_pred EEeccHHHHHHHHHhccCCCCCCeEEEecCCCCHHHHHHHHhCC-EEEEEcCCCcHHHHH-HHHHHHHHc-CCceEEEEe
Q 026274 50 FVWPCSVILAEYVWQQRYRFSGANVVELGAGTSLPGLVAAKVGS-NVTLTDDSNRIEVLK-NMRRVCEMN-KLNCRVMGL 126 (241)
Q Consensus 50 ~~W~~s~~L~~~l~~~~~~~~~~~VLElGcGtGl~sl~la~~g~-~V~~tD~~~~~~~l~-~~~~n~~~n-~~~~~~~~l 126 (241)
.++.++..|...+.......++++|||+|||||.++..+++.|+ +|+++|+++ +++. .++.+.+-. -....+..+
T Consensus 55 ~vsr~~~kL~~~l~~~~~~~~~~~vlDiG~gtG~~t~~l~~~ga~~v~avD~~~--~~l~~~l~~~~~v~~~~~~ni~~~ 132 (228)
T TIGR00478 55 FVSRGGEKLKEALEEFNIDVKNKIVLDVGSSTGGFTDCALQKGAKEVYGVDVGY--NQLAEKLRQDERVKVLERTNIRYV 132 (228)
T ss_pred hhhhhHHHHHHHHHhcCCCCCCCEEEEcccCCCHHHHHHHHcCCCEEEEEeCCH--HHHHHHHhcCCCeeEeecCCcccC
Confidence 67899999999998877667899999999999999999999987 899999996 3554 355443210 001122345
Q ss_pred ecCCCCcCcCCCCCcEEEEcCCcCCCccHHHHHHHHHHHhhc
Q 026274 127 TWGFLDASIFDLNPNIILGADVFYDASAFDDLFATITYLLQS 168 (241)
Q Consensus 127 ~w~~~~~~~~~~~fDlIl~~dvly~~~~~~~ll~~~~~lL~~ 168 (241)
+|.+...+. ..+|++++|- ..++..+..+|++
T Consensus 133 ~~~~~~~d~--~~~DvsfiS~--------~~~l~~i~~~l~~ 164 (228)
T TIGR00478 133 TPADIFPDF--ATFDVSFISL--------ISILPELDLLLNP 164 (228)
T ss_pred CHhHcCCCc--eeeeEEEeeh--------HhHHHHHHHHhCc
Confidence 666543111 2567666542 2357788888874
|
Hemolysins are exotoxins that attack blood cell membranes and cause cell rupture, often by forming a pore in the membrane. At least two members of this protein family have been characterized indirectly as pore-forming hemolysins, one from the spirochete Serpula (Treponema) hyodysenteriae and one from Mycobacterium tuberculosis. However, homology domains in this protein suggest methyltransferase activity (pfam01728) and RNA-binding activity (pfam01479). |
| >COG4106 Tam Trans-aconitate methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.94 E-value=9.1e-09 Score=84.72 Aligned_cols=98 Identities=16% Similarity=0.191 Sum_probs=78.3
Q ss_pred CCCCeEEEecCCCCHHHHHHHHh--CCEEEEEcCCCcHHHHHHHHHHHHHcCCceEEEEeecCCCCcCcCCCCCcEEEEc
Q 026274 69 FSGANVVELGAGTSLPGLVAAKV--GSNVTLTDDSNRIEVLKNMRRVCEMNKLNCRVMGLTWGFLDASIFDLNPNIILGA 146 (241)
Q Consensus 69 ~~~~~VLElGcGtGl~sl~la~~--g~~V~~tD~~~~~~~l~~~~~n~~~n~~~~~~~~l~w~~~~~~~~~~~fDlIl~~ 146 (241)
..-.+|.|||||+|.....++++ ++.++++|-|+ +|++.++. ...++++...|..++. .+.+.|+|+++
T Consensus 29 ~~~~~v~DLGCGpGnsTelL~~RwP~A~i~GiDsS~--~Mla~Aa~----rlp~~~f~~aDl~~w~---p~~~~dllfaN 99 (257)
T COG4106 29 ERPRRVVDLGCGPGNSTELLARRWPDAVITGIDSSP--AMLAKAAQ----RLPDATFEEADLRTWK---PEQPTDLLFAN 99 (257)
T ss_pred cccceeeecCCCCCHHHHHHHHhCCCCeEeeccCCH--HHHHHHHH----hCCCCceecccHhhcC---CCCccchhhhh
Confidence 34568999999999999999887 67999999995 79987754 4556777666655442 23479999999
Q ss_pred CCcCCCccHHHHHHHHHHHhhcCCCeEEEEE
Q 026274 147 DVFYDASAFDDLFATITYLLQSSPGSVFITT 177 (241)
Q Consensus 147 dvly~~~~~~~ll~~~~~lL~~~~~~~~~~~ 177 (241)
-++.+.+++..++..+-..|. |||++-+-
T Consensus 100 AvlqWlpdH~~ll~rL~~~L~--Pgg~LAVQ 128 (257)
T COG4106 100 AVLQWLPDHPELLPRLVSQLA--PGGVLAVQ 128 (257)
T ss_pred hhhhhccccHHHHHHHHHhhC--CCceEEEE
Confidence 999999999999999999998 66665544
|
|
| >PRK00274 ksgA 16S ribosomal RNA methyltransferase KsgA/Dim1 family protein; Reviewed | Back alignment and domain information |
|---|
Probab=98.94 E-value=3.1e-08 Score=85.80 Aligned_cols=88 Identities=16% Similarity=0.143 Sum_probs=64.5
Q ss_pred HHHHHHhccCCCCCCeEEEecCCCCHHHHHHHHhCCEEEEEcCCCcHHHHHHHHHHHHHcCCceEEEEeecCCCCcCcCC
Q 026274 58 LAEYVWQQRYRFSGANVVELGAGTSLPGLVAAKVGSNVTLTDDSNRIEVLKNMRRVCEMNKLNCRVMGLTWGFLDASIFD 137 (241)
Q Consensus 58 L~~~l~~~~~~~~~~~VLElGcGtGl~sl~la~~g~~V~~tD~~~~~~~l~~~~~n~~~n~~~~~~~~l~w~~~~~~~~~ 137 (241)
+++.+.......++.+|||+|||+|.++..+++.+.+|+++|+++ +|++.++++... .++.+...|+.+...+ +
T Consensus 30 i~~~i~~~l~~~~~~~VLEiG~G~G~lt~~L~~~~~~v~avE~d~--~~~~~~~~~~~~--~~v~~i~~D~~~~~~~--~ 103 (272)
T PRK00274 30 ILDKIVDAAGPQPGDNVLEIGPGLGALTEPLLERAAKVTAVEIDR--DLAPILAETFAE--DNLTIIEGDALKVDLS--E 103 (272)
T ss_pred HHHHHHHhcCCCCcCeEEEeCCCccHHHHHHHHhCCcEEEEECCH--HHHHHHHHhhcc--CceEEEEChhhcCCHH--H
Confidence 445555544455778999999999999999999988999999996 699999887743 4567777777654221 1
Q ss_pred CCCcEEEEcCCcCCC
Q 026274 138 LNPNIILGADVFYDA 152 (241)
Q Consensus 138 ~~fDlIl~~dvly~~ 152 (241)
..++.|+++-+ |+.
T Consensus 104 ~~~~~vv~NlP-Y~i 117 (272)
T PRK00274 104 LQPLKVVANLP-YNI 117 (272)
T ss_pred cCcceEEEeCC-ccc
Confidence 11588888866 443
|
|
| >PRK04148 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=98.92 E-value=8.6e-09 Score=79.53 Aligned_cols=80 Identities=16% Similarity=0.187 Sum_probs=56.9
Q ss_pred HHHHHHHhccCCCCCCeEEEecCCCCH-HHHHHHHhCCEEEEEcCCCcHHHHHHHHHHHHHcCCceEEEEeecCCCCcCc
Q 026274 57 ILAEYVWQQRYRFSGANVVELGAGTSL-PGLVAAKVGSNVTLTDDSNRIEVLKNMRRVCEMNKLNCRVMGLTWGFLDASI 135 (241)
Q Consensus 57 ~L~~~l~~~~~~~~~~~VLElGcGtGl-~sl~la~~g~~V~~tD~~~~~~~l~~~~~n~~~n~~~~~~~~l~w~~~~~~~ 135 (241)
.+++||..+....+++++||+|||+|. ++..|++.|.+|+++|+++ ++++.++++ + ..+...|+.+.....
T Consensus 3 ~i~~~l~~~~~~~~~~kileIG~GfG~~vA~~L~~~G~~ViaIDi~~--~aV~~a~~~----~--~~~v~dDlf~p~~~~ 74 (134)
T PRK04148 3 TIAEFIAENYEKGKNKKIVELGIGFYFKVAKKLKESGFDVIVIDINE--KAVEKAKKL----G--LNAFVDDLFNPNLEI 74 (134)
T ss_pred HHHHHHHHhcccccCCEEEEEEecCCHHHHHHHHHCCCEEEEEECCH--HHHHHHHHh----C--CeEEECcCCCCCHHH
Confidence 477888876655677899999999996 9999999999999999996 566666554 3 345566665432211
Q ss_pred CCCCCcEEEE
Q 026274 136 FDLNPNIILG 145 (241)
Q Consensus 136 ~~~~fDlIl~ 145 (241)
-..+|+|.+
T Consensus 75 -y~~a~liys 83 (134)
T PRK04148 75 -YKNAKLIYS 83 (134)
T ss_pred -HhcCCEEEE
Confidence 124566654
|
|
| >PRK13943 protein-L-isoaspartate O-methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=98.91 E-value=3.5e-08 Score=87.32 Aligned_cols=109 Identities=16% Similarity=0.050 Sum_probs=73.3
Q ss_pred HHHHHHhccCCCCCCeEEEecCCCCHHHHHHHHhC---CEEEEEcCCCcHHHHHHHHHHHHHcCCc-eEEEEeecCCCCc
Q 026274 58 LAEYVWQQRYRFSGANVVELGAGTSLPGLVAAKVG---SNVTLTDDSNRIEVLKNMRRVCEMNKLN-CRVMGLTWGFLDA 133 (241)
Q Consensus 58 L~~~l~~~~~~~~~~~VLElGcGtGl~sl~la~~g---~~V~~tD~~~~~~~l~~~~~n~~~n~~~-~~~~~l~w~~~~~ 133 (241)
+..++.+.....++.+|||+|||+|..+..+++.. .+|+++|+++ ++++.+++|++.++.. +.+...|..+...
T Consensus 68 l~a~ll~~L~i~~g~~VLDIG~GtG~~a~~LA~~~~~~g~VvgVDis~--~~l~~Ar~~l~~~g~~nV~~i~gD~~~~~~ 145 (322)
T PRK13943 68 LMALFMEWVGLDKGMRVLEIGGGTGYNAAVMSRVVGEKGLVVSVEYSR--KICEIAKRNVRRLGIENVIFVCGDGYYGVP 145 (322)
T ss_pred HHHHHHHhcCCCCCCEEEEEeCCccHHHHHHHHhcCCCCEEEEEECCH--HHHHHHHHHHHHcCCCcEEEEeCChhhccc
Confidence 33344443344567899999999999999999863 2699999995 7999999999888763 5555544332211
Q ss_pred CcCCCCCcEEEEcCCcCCCccHHHHHHHHHHHhhcCCCeEEEEEe
Q 026274 134 SIFDLNPNIILGADVFYDASAFDDLFATITYLLQSSPGSVFITTY 178 (241)
Q Consensus 134 ~~~~~~fDlIl~~dvly~~~~~~~ll~~~~~lL~~~~~~~~~~~~ 178 (241)
. ..+||+|+.+-.+. .+...+.+.|+ ++|.+++..
T Consensus 146 ~--~~~fD~Ii~~~g~~------~ip~~~~~~Lk--pgG~Lvv~~ 180 (322)
T PRK13943 146 E--FAPYDVIFVTVGVD------EVPETWFTQLK--EGGRVIVPI 180 (322)
T ss_pred c--cCCccEEEECCchH------HhHHHHHHhcC--CCCEEEEEe
Confidence 1 24799999864332 23345667787 566655543
|
|
| >KOG1500 consensus Protein arginine N-methyltransferase CARM1 [Posttranslational modification, protein turnover, chaperones; Transcription] | Back alignment and domain information |
|---|
Probab=98.90 E-value=9.1e-09 Score=89.69 Aligned_cols=99 Identities=17% Similarity=0.297 Sum_probs=74.5
Q ss_pred hccCCCCCCeEEEecCCCCHHHHHHHHhCC-EEEEEcCCCcHHHHHHHHHHHHHcCCc--eEEEEeecCCCCcCcCCCCC
Q 026274 64 QQRYRFSGANVVELGAGTSLPGLVAAKVGS-NVTLTDDSNRIEVLKNMRRVCEMNKLN--CRVMGLTWGFLDASIFDLNP 140 (241)
Q Consensus 64 ~~~~~~~~~~VLElGcGtGl~sl~la~~g~-~V~~tD~~~~~~~l~~~~~n~~~n~~~--~~~~~l~w~~~~~~~~~~~f 140 (241)
.+...++++.|||+|||+|+++.++|+.|+ +|.+++.+ +|.+.+++-++.|++. +.++....++. ..+++.
T Consensus 171 ~N~sDF~~kiVlDVGaGSGILS~FAaqAGA~~vYAvEAS---~MAqyA~~Lv~~N~~~~rItVI~GKiEdi---eLPEk~ 244 (517)
T KOG1500|consen 171 ENHSDFQDKIVLDVGAGSGILSFFAAQAGAKKVYAVEAS---EMAQYARKLVASNNLADRITVIPGKIEDI---ELPEKV 244 (517)
T ss_pred hcccccCCcEEEEecCCccHHHHHHHHhCcceEEEEehh---HHHHHHHHHHhcCCccceEEEccCccccc---cCchhc
Confidence 455678999999999999999999999998 89999999 4999999999988774 44554444433 345789
Q ss_pred cEEEEcCC---cCCCccHHHHHHHHHHHhhcC
Q 026274 141 NIILGADV---FYDASAFDDLFATITYLLQSS 169 (241)
Q Consensus 141 DlIl~~dv---ly~~~~~~~ll~~~~~lL~~~ 169 (241)
|+||+-+. +++...++.-+..- +.|+|+
T Consensus 245 DviISEPMG~mL~NERMLEsYl~Ar-k~l~P~ 275 (517)
T KOG1500|consen 245 DVIISEPMGYMLVNERMLESYLHAR-KWLKPN 275 (517)
T ss_pred cEEEeccchhhhhhHHHHHHHHHHH-hhcCCC
Confidence 99996553 34445555554443 778754
|
|
| >PRK11088 rrmA 23S rRNA methyltransferase A; Provisional | Back alignment and domain information |
|---|
Probab=98.89 E-value=4.5e-08 Score=84.72 Aligned_cols=91 Identities=14% Similarity=0.121 Sum_probs=63.1
Q ss_pred CCCeEEEecCCCCHHHHHHHHhC-----CEEEEEcCCCcHHHHHHHHHHHHHcCCceEEEEeecCCCCcCcCCCCCcEEE
Q 026274 70 SGANVVELGAGTSLPGLVAAKVG-----SNVTLTDDSNRIEVLKNMRRVCEMNKLNCRVMGLTWGFLDASIFDLNPNIIL 144 (241)
Q Consensus 70 ~~~~VLElGcGtGl~sl~la~~g-----~~V~~tD~~~~~~~l~~~~~n~~~n~~~~~~~~l~w~~~~~~~~~~~fDlIl 144 (241)
.+.+|||+|||+|..+..+++.. .+|+++|+++ +|++.++++. .++.+...+..+. +..+++||+|+
T Consensus 85 ~~~~vLDiGcG~G~~~~~l~~~~~~~~~~~v~giD~s~--~~l~~A~~~~----~~~~~~~~d~~~l--p~~~~sfD~I~ 156 (272)
T PRK11088 85 KATALLDIGCGEGYYTHALADALPEITTMQLFGLDISK--VAIKYAAKRY----PQVTFCVASSHRL--PFADQSLDAII 156 (272)
T ss_pred CCCeEEEECCcCCHHHHHHHHhcccccCCeEEEECCCH--HHHHHHHHhC----CCCeEEEeecccC--CCcCCceeEEE
Confidence 45689999999999988887652 3799999995 6888876642 3455555554432 33456899999
Q ss_pred EcCCcCCCccHHHHHHHHHHHhhcCCCeEEEEE
Q 026274 145 GADVFYDASAFDDLFATITYLLQSSPGSVFITT 177 (241)
Q Consensus 145 ~~dvly~~~~~~~ll~~~~~lL~~~~~~~~~~~ 177 (241)
+.. .+ ..++.+.++|+ |||.+++.
T Consensus 157 ~~~---~~----~~~~e~~rvLk--pgG~li~~ 180 (272)
T PRK11088 157 RIY---AP----CKAEELARVVK--PGGIVITV 180 (272)
T ss_pred Eec---CC----CCHHHHHhhcc--CCCEEEEE
Confidence 753 22 23577889998 55555544
|
|
| >COG2519 GCD14 tRNA(1-methyladenosine) methyltransferase and related methyltransferases [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=98.89 E-value=6.7e-08 Score=81.62 Aligned_cols=123 Identities=16% Similarity=0.140 Sum_probs=87.0
Q ss_pred CCCCCCeEEEecCCCCHHHHHHHH-hCC--EEEEEcCCCcHHHHHHHHHHHHHcCCc--eEEEEeecCCCCcCcCCCCCc
Q 026274 67 YRFSGANVVELGAGTSLPGLVAAK-VGS--NVTLTDDSNRIEVLKNMRRVCEMNKLN--CRVMGLTWGFLDASIFDLNPN 141 (241)
Q Consensus 67 ~~~~~~~VLElGcGtGl~sl~la~-~g~--~V~~tD~~~~~~~l~~~~~n~~~n~~~--~~~~~l~w~~~~~~~~~~~fD 141 (241)
....|.+|||.|.|+|.++.++|+ .|. +|+..|+.+ +.++.|++|++.-++. +.+.. ++..+......||
T Consensus 91 gi~pg~rVlEAGtGSG~lt~~La~~vg~~G~v~tyE~r~--d~~k~A~~Nl~~~~l~d~v~~~~---~Dv~~~~~~~~vD 165 (256)
T COG2519 91 GISPGSRVLEAGTGSGALTAYLARAVGPEGHVTTYEIRE--DFAKTARENLSEFGLGDRVTLKL---GDVREGIDEEDVD 165 (256)
T ss_pred CCCCCCEEEEcccCchHHHHHHHHhhCCCceEEEEEecH--HHHHHHHHHHHHhccccceEEEe---ccccccccccccC
Confidence 456889999999999999999997 343 899999995 7999999999986653 33333 4443334445899
Q ss_pred EEEEcCCcCCCccHHHHHHHHHHHhhcCCCeEEEEEeeccCchhHHHHHHHHcCCEEEEE
Q 026274 142 IILGADVFYDASAFDDLFATITYLLQSSPGSVFITTYHNRSGHHLIEFLMVKWGLKCVKL 201 (241)
Q Consensus 142 lIl~~dvly~~~~~~~ll~~~~~lL~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~i 201 (241)
.|+. +.+++...++.++.+|++++..++++++- .+..+..+ .+++.||.-.+.
T Consensus 166 av~L-----Dmp~PW~~le~~~~~Lkpgg~~~~y~P~v-eQv~kt~~-~l~~~g~~~ie~ 218 (256)
T COG2519 166 AVFL-----DLPDPWNVLEHVSDALKPGGVVVVYSPTV-EQVEKTVE-ALRERGFVDIEA 218 (256)
T ss_pred EEEE-----cCCChHHHHHHHHHHhCCCcEEEEEcCCH-HHHHHHHH-HHHhcCccchhh
Confidence 9986 78899999999999999654444554432 11222222 245668765444
|
|
| >PRK14901 16S rRNA methyltransferase B; Provisional | Back alignment and domain information |
|---|
Probab=98.88 E-value=5.2e-08 Score=89.77 Aligned_cols=128 Identities=16% Similarity=0.147 Sum_probs=85.3
Q ss_pred CCCCCeEEEecCCCCHHHHHHHHhC---CEEEEEcCCCcHHHHHHHHHHHHHcCC-ceEEEEeecCCCCcC--cCCCCCc
Q 026274 68 RFSGANVVELGAGTSLPGLVAAKVG---SNVTLTDDSNRIEVLKNMRRVCEMNKL-NCRVMGLTWGFLDAS--IFDLNPN 141 (241)
Q Consensus 68 ~~~~~~VLElGcGtGl~sl~la~~g---~~V~~tD~~~~~~~l~~~~~n~~~n~~-~~~~~~l~w~~~~~~--~~~~~fD 141 (241)
..+|.+|||+|||+|..++.+++.. .+|+++|+++ ++++.+++|++.++. ++.+...|..+.... ....+||
T Consensus 250 ~~~g~~VLDl~ag~G~kt~~la~~~~~~g~v~a~D~~~--~rl~~~~~n~~r~g~~~v~~~~~D~~~~~~~~~~~~~~fD 327 (434)
T PRK14901 250 PQPGEVILDACAAPGGKTTHIAELMGDQGEIWAVDRSA--SRLKKLQENAQRLGLKSIKILAADSRNLLELKPQWRGYFD 327 (434)
T ss_pred CCCcCEEEEeCCCCchhHHHHHHHhCCCceEEEEcCCH--HHHHHHHHHHHHcCCCeEEEEeCChhhcccccccccccCC
Confidence 3467899999999999999998862 4899999995 699999999999887 456665555433211 2245799
Q ss_pred EEEEcC------CcCCCcc----------------HHHHHHHHHHHhhcCCCeE-EEEE--eeccCchhHHHHHHHHc-C
Q 026274 142 IILGAD------VFYDASA----------------FDDLFATITYLLQSSPGSV-FITT--YHNRSGHHLIEFLMVKW-G 195 (241)
Q Consensus 142 lIl~~d------vly~~~~----------------~~~ll~~~~~lL~~~~~~~-~~~~--~~~r~~~~~~~~~~~~~-g 195 (241)
.|+... ++...++ ...+++.+.++|+ +||. +|.. ..+......+..+++++ +
T Consensus 328 ~Vl~DaPCSg~G~~~r~p~~~~~~~~~~~~~l~~~Q~~iL~~a~~~lk--pgG~lvystcsi~~~Ene~~v~~~l~~~~~ 405 (434)
T PRK14901 328 RILLDAPCSGLGTLHRHPDARWRQTPEKIQELAPLQAELLESLAPLLK--PGGTLVYATCTLHPAENEAQIEQFLARHPD 405 (434)
T ss_pred EEEEeCCCCcccccccCcchhhhCCHHHHHHHHHHHHHHHHHHHHhcC--CCCEEEEEeCCCChhhHHHHHHHHHHhCCC
Confidence 999632 2222221 4678888899998 4454 4443 23333344555566555 5
Q ss_pred CEEE
Q 026274 196 LKCV 199 (241)
Q Consensus 196 ~~~~ 199 (241)
|+..
T Consensus 406 ~~~~ 409 (434)
T PRK14901 406 WKLE 409 (434)
T ss_pred cEec
Confidence 7643
|
|
| >PRK14904 16S rRNA methyltransferase B; Provisional | Back alignment and domain information |
|---|
Probab=98.86 E-value=5.1e-08 Score=90.12 Aligned_cols=142 Identities=16% Similarity=0.161 Sum_probs=91.6
Q ss_pred eEEeccHHHHHHHHHhccCCCCCCeEEEecCCCCHHHHHHHHh---CCEEEEEcCCCcHHHHHHHHHHHHHcCCc-eEEE
Q 026274 49 LFVWPCSVILAEYVWQQRYRFSGANVVELGAGTSLPGLVAAKV---GSNVTLTDDSNRIEVLKNMRRVCEMNKLN-CRVM 124 (241)
Q Consensus 49 ~~~W~~s~~L~~~l~~~~~~~~~~~VLElGcGtGl~sl~la~~---g~~V~~tD~~~~~~~l~~~~~n~~~n~~~-~~~~ 124 (241)
..+++.+..++..+.. ..+|.+|||+|||+|..++.+++. +.+|+++|+++ ++++.+++|++..++. +++.
T Consensus 232 ~~vqd~~s~l~~~~l~---~~~g~~VLDlgaG~G~kt~~la~~~~~~~~V~avD~s~--~~l~~~~~~~~~~g~~~v~~~ 306 (445)
T PRK14904 232 VSVQNPTQALACLLLN---PQPGSTVLDLCAAPGGKSTFMAELMQNRGQITAVDRYP--QKLEKIRSHASALGITIIETI 306 (445)
T ss_pred EEEeCHHHHHHHHhcC---CCCCCEEEEECCCCCHHHHHHHHHhCCCcEEEEEECCH--HHHHHHHHHHHHhCCCeEEEE
Confidence 4677655555555443 346789999999999999888874 34899999996 6999999999988874 5666
Q ss_pred EeecCCCCcCcCCCCCcEEEEcCC------cC-------CC--c-------cHHHHHHHHHHHhhcCCCeEEEEEe-e--
Q 026274 125 GLTWGFLDASIFDLNPNIILGADV------FY-------DA--S-------AFDDLFATITYLLQSSPGSVFITTY-H-- 179 (241)
Q Consensus 125 ~l~w~~~~~~~~~~~fDlIl~~dv------ly-------~~--~-------~~~~ll~~~~~lL~~~~~~~~~~~~-~-- 179 (241)
..|..+.. .+.+||+|+.-.+ +. .. . ....++..+.++|+ +||.++.+. .
T Consensus 307 ~~Da~~~~---~~~~fD~Vl~D~Pcsg~g~~~r~p~~~~~~~~~~~~~l~~~q~~iL~~a~~~lk--pgG~lvystcs~~ 381 (445)
T PRK14904 307 EGDARSFS---PEEQPDAILLDAPCTGTGVLGRRAELRWKLTPEKLAELVGLQAELLDHAASLLK--PGGVLVYATCSIE 381 (445)
T ss_pred eCcccccc---cCCCCCEEEEcCCCCCcchhhcCcchhhcCCHHHHHHHHHHHHHHHHHHHHhcC--CCcEEEEEeCCCC
Confidence 66654432 2357999985211 11 11 1 13468889999998 455444332 2
Q ss_pred ccCchhHHHHHHHHc-CCEEEE
Q 026274 180 NRSGHHLIEFLMVKW-GLKCVK 200 (241)
Q Consensus 180 ~r~~~~~~~~~~~~~-g~~~~~ 200 (241)
+......+..+++++ +|....
T Consensus 382 ~~Ene~~v~~~l~~~~~~~~~~ 403 (445)
T PRK14904 382 PEENELQIEAFLQRHPEFSAEP 403 (445)
T ss_pred hhhHHHHHHHHHHhCCCCEEec
Confidence 222333445566555 566543
|
|
| >TIGR00563 rsmB ribosomal RNA small subunit methyltransferase RsmB | Back alignment and domain information |
|---|
Probab=98.86 E-value=7.9e-08 Score=88.39 Aligned_cols=139 Identities=12% Similarity=0.030 Sum_probs=88.9
Q ss_pred ccHHHHHHHHHhccCCCCCCeEEEecCCCCHHHHHHHHh-C-CEEEEEcCCCcHHHHHHHHHHHHHcCCceEE--EEeec
Q 026274 53 PCSVILAEYVWQQRYRFSGANVVELGAGTSLPGLVAAKV-G-SNVTLTDDSNRIEVLKNMRRVCEMNKLNCRV--MGLTW 128 (241)
Q Consensus 53 ~~s~~L~~~l~~~~~~~~~~~VLElGcGtGl~sl~la~~-g-~~V~~tD~~~~~~~l~~~~~n~~~n~~~~~~--~~l~w 128 (241)
.++..++.++. ..+|.+|||+|||+|..++.+++. + ++|+++|+++ ++++.+++|++..+..+.+ ...+.
T Consensus 225 ~~s~~~~~~L~----~~~g~~VLDlcag~G~kt~~la~~~~~~~v~a~D~~~--~~l~~~~~n~~r~g~~~~v~~~~~d~ 298 (426)
T TIGR00563 225 ASAQWVATWLA----PQNEETILDACAAPGGKTTHILELAPQAQVVALDIHE--HRLKRVYENLKRLGLTIKAETKDGDG 298 (426)
T ss_pred HHHHHHHHHhC----CCCCCeEEEeCCCccHHHHHHHHHcCCCeEEEEeCCH--HHHHHHHHHHHHcCCCeEEEEecccc
Confidence 45666666653 346789999999999999999885 3 5999999996 6999999999998876544 32232
Q ss_pred CCCCcCcCCCCCcEEEEc------CCcCCCcc----------------HHHHHHHHHHHhhcCCCeEEEEEe--eccCch
Q 026274 129 GFLDASIFDLNPNIILGA------DVFYDASA----------------FDDLFATITYLLQSSPGSVFITTY--HNRSGH 184 (241)
Q Consensus 129 ~~~~~~~~~~~fDlIl~~------dvly~~~~----------------~~~ll~~~~~lL~~~~~~~~~~~~--~~r~~~ 184 (241)
..........+||.|+.. .++...+. ...+++...++|++ +|.++|..+ ....+.
T Consensus 299 ~~~~~~~~~~~fD~VllDaPcSg~G~~~~~p~~~~~~~~~~~~~l~~lQ~~lL~~a~~~Lkp-gG~lvystcs~~~~Ene 377 (426)
T TIGR00563 299 RGPSQWAENEQFDRILLDAPCSATGVIRRHPDIKWLRKPRDIAELAELQSEILDAIWPLLKT-GGTLVYATCSVLPEENS 377 (426)
T ss_pred ccccccccccccCEEEEcCCCCCCcccccCcchhhcCCHHHHHHHHHHHHHHHHHHHHhcCC-CcEEEEEeCCCChhhCH
Confidence 211110123579999853 23332222 36788889999984 233444332 223344
Q ss_pred hHHHHHHHHc-CCEE
Q 026274 185 HLIEFLMVKW-GLKC 198 (241)
Q Consensus 185 ~~~~~~~~~~-g~~~ 198 (241)
..+..+++++ +|..
T Consensus 378 ~~v~~~l~~~~~~~~ 392 (426)
T TIGR00563 378 EQIKAFLQEHPDFPF 392 (426)
T ss_pred HHHHHHHHhCCCCee
Confidence 4556666655 4543
|
The seed alignment is built from bacterial sequences only. Eukaryotic homologs include Nop2, a protein required for processing pre-rRNA, that is likely also a rRNA methyltransferase, although the fine specificity may differ. Cutoff scores are set to avoid treating archaeal and eukaroytic homologs automatically as functionally equivalent, although they may have very similar roles. |
| >COG1092 Predicted SAM-dependent methyltransferases [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.83 E-value=1.1e-07 Score=85.78 Aligned_cols=130 Identities=22% Similarity=0.166 Sum_probs=90.8
Q ss_pred CCCCCeEEEecCCCCHHHHHHHHhCC-EEEEEcCCCcHHHHHHHHHHHHHcCCce---EEEEeecCCCCc--CcCCCCCc
Q 026274 68 RFSGANVVELGAGTSLPGLVAAKVGS-NVTLTDDSNRIEVLKNMRRVCEMNKLNC---RVMGLTWGFLDA--SIFDLNPN 141 (241)
Q Consensus 68 ~~~~~~VLElGcGtGl~sl~la~~g~-~V~~tD~~~~~~~l~~~~~n~~~n~~~~---~~~~l~w~~~~~--~~~~~~fD 141 (241)
..+|++||++-|=||..|+.+|..|| +||.+|+|. .+|+.+++|+++|++.. .+...|.-+... .....+||
T Consensus 215 ~~~GkrvLNlFsYTGgfSv~Aa~gGA~~vt~VD~S~--~al~~a~~N~~LNg~~~~~~~~i~~Dvf~~l~~~~~~g~~fD 292 (393)
T COG1092 215 LAAGKRVLNLFSYTGGFSVHAALGGASEVTSVDLSK--RALEWARENAELNGLDGDRHRFIVGDVFKWLRKAERRGEKFD 292 (393)
T ss_pred hccCCeEEEecccCcHHHHHHHhcCCCceEEEeccH--HHHHHHHHHHHhcCCCccceeeehhhHHHHHHHHHhcCCccc
Confidence 34699999999999999999999999 999999996 59999999999999853 344433322221 11234899
Q ss_pred EEEEcCCcCCC---------ccHHHHHHHHHHHhhcCCCeEEEEEe--eccCchhHHHHH---HHHcCCEEEEE
Q 026274 142 IILGADVFYDA---------SAFDDLFATITYLLQSSPGSVFITTY--HNRSGHHLIEFL---MVKWGLKCVKL 201 (241)
Q Consensus 142 lIl~~dvly~~---------~~~~~ll~~~~~lL~~~~~~~~~~~~--~~r~~~~~~~~~---~~~~g~~~~~i 201 (241)
+|+.-++-|-. .++..|+..+.++|+ |+|+++++. .........+.+ ....|.....+
T Consensus 293 lIilDPPsF~r~k~~~~~~~rdy~~l~~~~~~iL~--pgG~l~~~s~~~~~~~~~f~~~i~~a~~~~~~~~~~~ 364 (393)
T COG1092 293 LIILDPPSFARSKKQEFSAQRDYKDLNDLALRLLA--PGGTLVTSSCSRHFSSDLFLEIIARAAAAAGRRAQEI 364 (393)
T ss_pred EEEECCcccccCcccchhHHHHHHHHHHHHHHHcC--CCCEEEEEecCCccCHHHHHHHHHHHHHhcCCcEEEe
Confidence 99987777653 367889999999998 455544443 333333333333 23445555555
|
|
| >KOG3420 consensus Predicted RNA methylase [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=98.83 E-value=9.3e-09 Score=79.62 Aligned_cols=84 Identities=14% Similarity=0.062 Sum_probs=68.4
Q ss_pred hccCCCCCCeEEEecCCCCHHHHHHHHhCC-EEEEEcCCCcHHHHHHHHHHHHHcCCceEEEEeecCCCCcCcCCCCCcE
Q 026274 64 QQRYRFSGANVVELGAGTSLPGLVAAKVGS-NVTLTDDSNRIEVLKNMRRVCEMNKLNCRVMGLTWGFLDASIFDLNPNI 142 (241)
Q Consensus 64 ~~~~~~~~~~VLElGcGtGl~sl~la~~g~-~V~~tD~~~~~~~l~~~~~n~~~n~~~~~~~~l~w~~~~~~~~~~~fDl 142 (241)
.....+.|+.++|||||+|.+++.++-.+. .|+|.|+++ ++|+..++|++.-.+++.+.+.+..+.... .+.||.
T Consensus 42 ~TygdiEgkkl~DLgcgcGmLs~a~sm~~~e~vlGfDIdp--eALEIf~rNaeEfEvqidlLqcdildle~~--~g~fDt 117 (185)
T KOG3420|consen 42 NTYGDIEGKKLKDLGCGCGMLSIAFSMPKNESVLGFDIDP--EALEIFTRNAEEFEVQIDLLQCDILDLELK--GGIFDT 117 (185)
T ss_pred hhhccccCcchhhhcCchhhhHHHhhcCCCceEEeeecCH--HHHHHHhhchHHhhhhhheeeeeccchhcc--CCeEee
Confidence 344668999999999999999988888777 799999995 799999999998888877777776654322 357999
Q ss_pred EEEcCCcCC
Q 026274 143 ILGADVFYD 151 (241)
Q Consensus 143 Il~~dvly~ 151 (241)
.+.+..+-.
T Consensus 118 aviNppFGT 126 (185)
T KOG3420|consen 118 AVINPPFGT 126 (185)
T ss_pred EEecCCCCc
Confidence 998877754
|
|
| >KOG2904 consensus Predicted methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.82 E-value=1.2e-07 Score=80.71 Aligned_cols=126 Identities=16% Similarity=0.146 Sum_probs=86.1
Q ss_pred eccHHHHHHHHHh---ccCCCCCCeEEEecCCCCHHHHHHHHh-C-CEEEEEcCCCcHHHHHHHHHHHHHcCCc--eEEE
Q 026274 52 WPCSVILAEYVWQ---QRYRFSGANVVELGAGTSLPGLVAAKV-G-SNVTLTDDSNRIEVLKNMRRVCEMNKLN--CRVM 124 (241)
Q Consensus 52 W~~s~~L~~~l~~---~~~~~~~~~VLElGcGtGl~sl~la~~-g-~~V~~tD~~~~~~~l~~~~~n~~~n~~~--~~~~ 124 (241)
|+... +.+++.. +...+++..+||+|||+|.+|+.++.. + ..|+++|.++ .++..+.+|+..+++. +.++
T Consensus 128 pETEE-~V~~Vid~~~~~~~~~~~~ildlgtGSGaIslsll~~L~~~~v~AiD~S~--~Ai~La~eN~qr~~l~g~i~v~ 204 (328)
T KOG2904|consen 128 PETEE-WVEAVIDALNNSEHSKHTHILDLGTGSGAISLSLLHGLPQCTVTAIDVSK--AAIKLAKENAQRLKLSGRIEVI 204 (328)
T ss_pred ccHHH-HHHHHHHHHhhhhhcccceEEEecCCccHHHHHHHhcCCCceEEEEeccH--HHHHHHHHHHHHHhhcCceEEE
Confidence 55444 4455433 234456678999999999999998885 3 3799999996 5999999999988764 3344
Q ss_pred ----EeecCCCCcCcCCCCCcEEEEcCCcCCCc--------------------------cHHHHHHHHHHHhhcCCCeEE
Q 026274 125 ----GLTWGFLDASIFDLNPNIILGADVFYDAS--------------------------AFDDLFATITYLLQSSPGSVF 174 (241)
Q Consensus 125 ----~l~w~~~~~~~~~~~fDlIl~~dvly~~~--------------------------~~~~ll~~~~~lL~~~~~~~~ 174 (241)
..+|.+. .+...+++|+++++.++-... .+-.++.-..++|+ +|+.+
T Consensus 205 ~~~me~d~~~~-~~l~~~~~dllvsNPPYI~~dD~~~l~~eV~~yEp~lALdGg~eG~~~~~~~~~~a~R~Lq--~gg~~ 281 (328)
T KOG2904|consen 205 HNIMESDASDE-HPLLEGKIDLLVSNPPYIRKDDNRQLKPEVRLYEPKLALDGGLEGYDNLVHYWLLATRMLQ--PGGFE 281 (328)
T ss_pred ecccccccccc-cccccCceeEEecCCCcccccchhhcCchheecCchhhhccccchhHHHHHHHHhhHhhcc--cCCeE
Confidence 3344433 234567999999987764322 34455666778887 57777
Q ss_pred EEEeeccCc
Q 026274 175 ITTYHNRSG 183 (241)
Q Consensus 175 ~~~~~~r~~ 183 (241)
.+....|..
T Consensus 282 ~le~~~~~~ 290 (328)
T KOG2904|consen 282 QLELVERKE 290 (328)
T ss_pred EEEeccccc
Confidence 777764433
|
|
| >COG0742 N6-adenine-specific methylase [DNA replication, recombination, and repair] | Back alignment and domain information |
|---|
Probab=98.82 E-value=4.4e-08 Score=79.56 Aligned_cols=110 Identities=20% Similarity=0.238 Sum_probs=78.1
Q ss_pred CCCCCeEEEecCCCCHHHHHHHHhCC-EEEEEcCCCcHHHHHHHHHHHHHcCC--ceEEEEeecCCCCcCcCC-CCCcEE
Q 026274 68 RFSGANVVELGAGTSLPGLVAAKVGS-NVTLTDDSNRIEVLKNMRRVCEMNKL--NCRVMGLTWGFLDASIFD-LNPNII 143 (241)
Q Consensus 68 ~~~~~~VLElGcGtGl~sl~la~~g~-~V~~tD~~~~~~~l~~~~~n~~~n~~--~~~~~~l~w~~~~~~~~~-~~fDlI 143 (241)
.+.|.++|||-||+|.+|+.+.++|| +++++|.+. .++..+++|++.-+. ++.+...|-......... .+||+|
T Consensus 41 ~i~g~~~LDlFAGSGaLGlEAlSRGA~~~~~vE~~~--~a~~~l~~N~~~l~~~~~~~~~~~da~~~L~~~~~~~~FDlV 118 (187)
T COG0742 41 EIEGARVLDLFAGSGALGLEALSRGAARVVFVEKDR--KAVKILKENLKALGLEGEARVLRNDALRALKQLGTREPFDLV 118 (187)
T ss_pred ccCCCEEEEecCCccHhHHHHHhCCCceEEEEecCH--HHHHHHHHHHHHhCCccceEEEeecHHHHHHhcCCCCcccEE
Confidence 47899999999999999999999998 899999995 699999999988774 444444443322112111 259999
Q ss_pred EEcCCcCCCccHHHHHHHHH----HHhhcCCCeEEEEEeeccC
Q 026274 144 LGADVFYDASAFDDLFATIT----YLLQSSPGSVFITTYHNRS 182 (241)
Q Consensus 144 l~~dvly~~~~~~~ll~~~~----~lL~~~~~~~~~~~~~~r~ 182 (241)
+. |+-|+....+.....+. .+|+ +++.+++.++...
T Consensus 119 fl-DPPy~~~l~~~~~~~~~~~~~~~L~--~~~~iv~E~~~~~ 158 (187)
T COG0742 119 FL-DPPYAKGLLDKELALLLLEENGWLK--PGALIVVEHDKDV 158 (187)
T ss_pred Ee-CCCCccchhhHHHHHHHHHhcCCcC--CCcEEEEEeCCCc
Confidence 95 66666555533333333 4454 7888888876653
|
|
| >KOG1541 consensus Predicted protein carboxyl methylase [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.82 E-value=3.7e-08 Score=81.39 Aligned_cols=125 Identities=17% Similarity=0.179 Sum_probs=84.6
Q ss_pred CCCeEEEecCCCCHHHHHHHHhCCEEEEEcCCCcHHHHHHHHHHHHHcCCceEEEEeecCCCCcCcCCCCCcEEEEcCCc
Q 026274 70 SGANVVELGAGTSLPGLVAAKVGSNVTLTDDSNRIEVLKNMRRVCEMNKLNCRVMGLTWGFLDASIFDLNPNIILGADVF 149 (241)
Q Consensus 70 ~~~~VLElGcGtGl~sl~la~~g~~V~~tD~~~~~~~l~~~~~n~~~n~~~~~~~~l~w~~~~~~~~~~~fDlIl~~dvl 149 (241)
+..-|||||||||+.|-.+...|+..+++|+|+ .||+.+.+ -+ +.-.+.-.|.+.. .+..++.||-+|+--.+
T Consensus 50 ~~~~iLDIGCGsGLSg~vL~~~Gh~wiGvDiSp--sML~~a~~-~e---~egdlil~DMG~G-lpfrpGtFDg~ISISAv 122 (270)
T KOG1541|consen 50 KSGLILDIGCGSGLSGSVLSDSGHQWIGVDISP--SMLEQAVE-RE---LEGDLILCDMGEG-LPFRPGTFDGVISISAV 122 (270)
T ss_pred CCcEEEEeccCCCcchheeccCCceEEeecCCH--HHHHHHHH-hh---hhcCeeeeecCCC-CCCCCCccceEEEeeee
Confidence 556799999999999999999999999999995 69998876 11 1223455677754 35556789977643333
Q ss_pred ---------CCCc--cHHHHHHHHHHHhhcCCCeEEEEEeeccCchh--HHHHHHHHcCCEEEEEec
Q 026274 150 ---------YDAS--AFDDLFATITYLLQSSPGSVFITTYHNRSGHH--LIEFLMVKWGLKCVKLVD 203 (241)
Q Consensus 150 ---------y~~~--~~~~ll~~~~~lL~~~~~~~~~~~~~~r~~~~--~~~~~~~~~g~~~~~i~~ 203 (241)
+|.+ -+..++.++..+|+ .++..++-+.+.+..+ .+..-..+.||.--.+.+
T Consensus 123 QWLcnA~~s~~~P~~Rl~~FF~tLy~~l~--rg~raV~QfYpen~~q~d~i~~~a~~aGF~GGlvVd 187 (270)
T KOG1541|consen 123 QWLCNADKSLHVPKKRLLRFFGTLYSCLK--RGARAVLQFYPENEAQIDMIMQQAMKAGFGGGLVVD 187 (270)
T ss_pred eeecccCccccChHHHHHHHhhhhhhhhc--cCceeEEEecccchHHHHHHHHHHHhhccCCceeee
Confidence 2221 24557888999998 5566666666655533 333334567876655544
|
|
| >PTZ00338 dimethyladenosine transferase-like protein; Provisional | Back alignment and domain information |
|---|
Probab=98.81 E-value=2.2e-07 Score=81.34 Aligned_cols=88 Identities=8% Similarity=0.009 Sum_probs=65.2
Q ss_pred HHHHHHhccCCCCCCeEEEecCCCCHHHHHHHHhCCEEEEEcCCCcHHHHHHHHHHHHHcC--CceEEEEeecCCCCcCc
Q 026274 58 LAEYVWQQRYRFSGANVVELGAGTSLPGLVAAKVGSNVTLTDDSNRIEVLKNMRRVCEMNK--LNCRVMGLTWGFLDASI 135 (241)
Q Consensus 58 L~~~l~~~~~~~~~~~VLElGcGtGl~sl~la~~g~~V~~tD~~~~~~~l~~~~~n~~~n~--~~~~~~~l~w~~~~~~~ 135 (241)
+.+.+.......++.+|||+|||+|.++..+++.+.+|+++|+++ .+++.+++++..++ .++++...|+.+..
T Consensus 24 i~~~Iv~~~~~~~~~~VLEIG~G~G~LT~~Ll~~~~~V~avEiD~--~li~~l~~~~~~~~~~~~v~ii~~Dal~~~--- 98 (294)
T PTZ00338 24 VLDKIVEKAAIKPTDTVLEIGPGTGNLTEKLLQLAKKVIAIEIDP--RMVAELKKRFQNSPLASKLEVIEGDALKTE--- 98 (294)
T ss_pred HHHHHHHhcCCCCcCEEEEecCchHHHHHHHHHhCCcEEEEECCH--HHHHHHHHHHHhcCCCCcEEEEECCHhhhc---
Confidence 344555544555778999999999999999999888999999995 69999999987665 35666666654432
Q ss_pred CCCCCcEEEEcCCcCC
Q 026274 136 FDLNPNIILGADVFYD 151 (241)
Q Consensus 136 ~~~~fDlIl~~dvly~ 151 (241)
-..||.|+++-++|-
T Consensus 99 -~~~~d~VvaNlPY~I 113 (294)
T PTZ00338 99 -FPYFDVCVANVPYQI 113 (294)
T ss_pred -ccccCEEEecCCccc
Confidence 136898887544443
|
|
| >TIGR00446 nop2p NOL1/NOP2/sun family putative RNA methylase | Back alignment and domain information |
|---|
Probab=98.80 E-value=2.4e-07 Score=79.98 Aligned_cols=137 Identities=13% Similarity=0.085 Sum_probs=87.2
Q ss_pred EeccHHHHHHHHHhccCCCCCCeEEEecCCCCHHHHHHHHh---CCEEEEEcCCCcHHHHHHHHHHHHHcCC-ceEEEEe
Q 026274 51 VWPCSVILAEYVWQQRYRFSGANVVELGAGTSLPGLVAAKV---GSNVTLTDDSNRIEVLKNMRRVCEMNKL-NCRVMGL 126 (241)
Q Consensus 51 ~W~~s~~L~~~l~~~~~~~~~~~VLElGcGtGl~sl~la~~---g~~V~~tD~~~~~~~l~~~~~n~~~n~~-~~~~~~l 126 (241)
.-.++.+.+..+ . ..+|.+|||+|||+|..++.+++. ...|+++|+++ .+++.+++|++.++. ++.+...
T Consensus 56 qd~~s~~~~~~l-~---~~~g~~VLDl~ag~G~kt~~la~~~~~~g~v~a~D~~~--~~l~~~~~n~~~~g~~~v~~~~~ 129 (264)
T TIGR00446 56 QEASSMIPPLAL-E---PDPPERVLDMAAAPGGKTTQISALMKNEGAIVANEFSK--SRTKVLIANINRCGVLNVAVTNF 129 (264)
T ss_pred ECHHHHHHHHHh-C---CCCcCEEEEECCCchHHHHHHHHHcCCCCEEEEEcCCH--HHHHHHHHHHHHcCCCcEEEecC
Confidence 345555444433 2 346789999999999999998875 24899999995 699999999999886 4555555
Q ss_pred ecCCCCcCcCCCCCcEEEEcCCcCCC---------------c-------cHHHHHHHHHHHhhcCCCeE-EEEEee--cc
Q 026274 127 TWGFLDASIFDLNPNIILGADVFYDA---------------S-------AFDDLFATITYLLQSSPGSV-FITTYH--NR 181 (241)
Q Consensus 127 ~w~~~~~~~~~~~fDlIl~~dvly~~---------------~-------~~~~ll~~~~~lL~~~~~~~-~~~~~~--~r 181 (241)
|..... ....+||.|+...+.... . ....+++...++|+ +||. +|.++. ..
T Consensus 130 D~~~~~--~~~~~fD~Vl~D~Pcsg~G~~~~~p~~~~~~~~~~~~~l~~~q~~iL~~a~~~lk--pgG~lvYstcs~~~~ 205 (264)
T TIGR00446 130 DGRVFG--AAVPKFDAILLDAPCSGEGVIRKDPSRKKNWSEEDIQEISALQKELIDSAFDALK--PGGVLVYSTCSLEPE 205 (264)
T ss_pred CHHHhh--hhccCCCEEEEcCCCCCCcccccChhhhhcCCHHHHHHHHHHHHHHHHHHHHhcC--CCCEEEEEeCCCChH
Confidence 543321 123469999865433221 1 23458888888887 4444 444322 22
Q ss_pred CchhHHHHHHHHc-CCE
Q 026274 182 SGHHLIEFLMVKW-GLK 197 (241)
Q Consensus 182 ~~~~~~~~~~~~~-g~~ 197 (241)
.....+.++++++ ++.
T Consensus 206 Ene~vv~~~l~~~~~~~ 222 (264)
T TIGR00446 206 ENEAVVDYLLEKRPDVV 222 (264)
T ss_pred HHHHHHHHHHHhCCCcE
Confidence 2244556666654 454
|
|
| >PRK14896 ksgA 16S ribosomal RNA methyltransferase KsgA/Dim1 family protein; Provisional | Back alignment and domain information |
|---|
Probab=98.80 E-value=3.7e-08 Score=84.67 Aligned_cols=87 Identities=14% Similarity=0.027 Sum_probs=65.0
Q ss_pred HHHHHHhccCCCCCCeEEEecCCCCHHHHHHHHhCCEEEEEcCCCcHHHHHHHHHHHHHcCCceEEEEeecCCCCcCcCC
Q 026274 58 LAEYVWQQRYRFSGANVVELGAGTSLPGLVAAKVGSNVTLTDDSNRIEVLKNMRRVCEMNKLNCRVMGLTWGFLDASIFD 137 (241)
Q Consensus 58 L~~~l~~~~~~~~~~~VLElGcGtGl~sl~la~~g~~V~~tD~~~~~~~l~~~~~n~~~n~~~~~~~~l~w~~~~~~~~~ 137 (241)
+++.+.+.....++.+|||+|||+|.++..+++.+.+|+++|+++ .+++.+++++.. ..++.+...|+.+...
T Consensus 17 ~~~~iv~~~~~~~~~~VLEIG~G~G~lt~~L~~~~~~v~~vEid~--~~~~~l~~~~~~-~~~v~ii~~D~~~~~~---- 89 (258)
T PRK14896 17 VVDRIVEYAEDTDGDPVLEIGPGKGALTDELAKRAKKVYAIELDP--RLAEFLRDDEIA-AGNVEIIEGDALKVDL---- 89 (258)
T ss_pred HHHHHHHhcCCCCcCeEEEEeCccCHHHHHHHHhCCEEEEEECCH--HHHHHHHHHhcc-CCCEEEEEeccccCCc----
Confidence 445555544555778999999999999999999988999999996 699999988754 2356666666654321
Q ss_pred CCCcEEEEcCCcCC
Q 026274 138 LNPNIILGADVFYD 151 (241)
Q Consensus 138 ~~fDlIl~~dvly~ 151 (241)
..||.|+++-+++.
T Consensus 90 ~~~d~Vv~NlPy~i 103 (258)
T PRK14896 90 PEFNKVVSNLPYQI 103 (258)
T ss_pred hhceEEEEcCCccc
Confidence 25899998877543
|
|
| >KOG2187 consensus tRNA uracil-5-methyltransferase and related tRNA-modifying enzymes [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=98.78 E-value=6e-08 Score=88.83 Aligned_cols=155 Identities=15% Similarity=0.115 Sum_probs=107.0
Q ss_pred ccHHHHHHHHHhccCCCCCCeEEEecCCCCHHHHHHHHhCCEEEEEcCCCcHHHHHHHHHHHHHcCC-ceEEEEeecCCC
Q 026274 53 PCSVILAEYVWQQRYRFSGANVVELGAGTSLPGLVAAKVGSNVTLTDDSNRIEVLKNMRRVCEMNKL-NCRVMGLTWGFL 131 (241)
Q Consensus 53 ~~s~~L~~~l~~~~~~~~~~~VLElGcGtGl~sl~la~~g~~V~~tD~~~~~~~l~~~~~n~~~n~~-~~~~~~l~w~~~ 131 (241)
.++.+|..++..+.....++.+||+-||||++|+++|+.-.+|+++++++ ++++.|+.|+..|++ +++|....-.+.
T Consensus 366 ~~aevLys~i~e~~~l~~~k~llDv~CGTG~iglala~~~~~ViGvEi~~--~aV~dA~~nA~~NgisNa~Fi~gqaE~~ 443 (534)
T KOG2187|consen 366 SAAEVLYSTIGEWAGLPADKTLLDVCCGTGTIGLALARGVKRVIGVEISP--DAVEDAEKNAQINGISNATFIVGQAEDL 443 (534)
T ss_pred HHHHHHHHHHHHHhCCCCCcEEEEEeecCCceehhhhccccceeeeecCh--hhcchhhhcchhcCccceeeeecchhhc
Confidence 57788999999888877889999999999999999999888999999995 799999999999998 577777644444
Q ss_pred CcCcCCC---CCcEEEEcCCcCCCccHHHHHHHHHHHhhcCCCeEEEEEeeccCchhHHHHHH-------HHcCCEEEEE
Q 026274 132 DASIFDL---NPNIILGADVFYDASAFDDLFATITYLLQSSPGSVFITTYHNRSGHHLIEFLM-------VKWGLKCVKL 201 (241)
Q Consensus 132 ~~~~~~~---~fDlIl~~dvly~~~~~~~ll~~~~~lL~~~~~~~~~~~~~~r~~~~~~~~~~-------~~~g~~~~~i 201 (241)
...+... +-+++...|.-- ......+++.+...-+ +.-++|++...+........++ .+-+|....+
T Consensus 444 ~~sl~~~~~~~~~~v~iiDPpR-~Glh~~~ik~l~~~~~--~~rlvyvSCn~~t~ar~v~~lc~~~~~~~~~g~fr~~~~ 520 (534)
T KOG2187|consen 444 FPSLLTPCCDSETLVAIIDPPR-KGLHMKVIKALRAYKN--PRRLVYVSCNPHTAARNVIDLCSSPKYRLKKGFFRLVKA 520 (534)
T ss_pred cchhcccCCCCCceEEEECCCc-ccccHHHHHHHHhccC--ccceEEEEcCHHHhhhhHHHhhcCccccccccccceeee
Confidence 3333332 345555444433 4456677777777643 5666676665543222233332 2234555555
Q ss_pred --ecCCCCCCccc
Q 026274 202 --VDGFSFLPHYK 212 (241)
Q Consensus 202 --~~~~~~~p~~~ 212 (241)
.+.|.+.||.+
T Consensus 521 ~~VDlfP~T~h~E 533 (534)
T KOG2187|consen 521 VGVDLFPHTPHCE 533 (534)
T ss_pred eecccCCCCCcCC
Confidence 56677666653
|
|
| >PRK00811 spermidine synthase; Provisional | Back alignment and domain information |
|---|
Probab=98.77 E-value=6e-08 Score=84.50 Aligned_cols=103 Identities=14% Similarity=0.093 Sum_probs=71.2
Q ss_pred CCCeEEEecCCCCHHHHHHHHh-CC-EEEEEcCCCcHHHHHHHHHHHHHc------CCceEEEEeecCCCCcCcCCCCCc
Q 026274 70 SGANVVELGAGTSLPGLVAAKV-GS-NVTLTDDSNRIEVLKNMRRVCEMN------KLNCRVMGLTWGFLDASIFDLNPN 141 (241)
Q Consensus 70 ~~~~VLElGcGtGl~sl~la~~-g~-~V~~tD~~~~~~~l~~~~~n~~~n------~~~~~~~~l~w~~~~~~~~~~~fD 141 (241)
+.++||+||||+|..+..+++. +. +|+++|+++ ++++.++++.... ..++++...|....... .+.+||
T Consensus 76 ~p~~VL~iG~G~G~~~~~~l~~~~~~~V~~VEid~--~vv~~a~~~~~~~~~~~~~d~rv~v~~~Da~~~l~~-~~~~yD 152 (283)
T PRK00811 76 NPKRVLIIGGGDGGTLREVLKHPSVEKITLVEIDE--RVVEVCRKYLPEIAGGAYDDPRVELVIGDGIKFVAE-TENSFD 152 (283)
T ss_pred CCCEEEEEecCchHHHHHHHcCCCCCEEEEEeCCH--HHHHHHHHHhHHhccccccCCceEEEECchHHHHhh-CCCccc
Confidence 4679999999999999988886 43 899999996 6999999877532 33455655554333222 345899
Q ss_pred EEEEc--CCcCCCc--cHHHHHHHHHHHhhcCCCeEEEEE
Q 026274 142 IILGA--DVFYDAS--AFDDLFATITYLLQSSPGSVFITT 177 (241)
Q Consensus 142 lIl~~--dvly~~~--~~~~ll~~~~~lL~~~~~~~~~~~ 177 (241)
+|++. |...-.. .-..+++.+++.|+ ++|++++-
T Consensus 153 vIi~D~~dp~~~~~~l~t~ef~~~~~~~L~--~gGvlv~~ 190 (283)
T PRK00811 153 VIIVDSTDPVGPAEGLFTKEFYENCKRALK--EDGIFVAQ 190 (283)
T ss_pred EEEECCCCCCCchhhhhHHHHHHHHHHhcC--CCcEEEEe
Confidence 99963 2221111 12677889999998 66776654
|
|
| >PRK14903 16S rRNA methyltransferase B; Provisional | Back alignment and domain information |
|---|
Probab=98.77 E-value=2.3e-07 Score=85.47 Aligned_cols=129 Identities=12% Similarity=0.060 Sum_probs=84.4
Q ss_pred CCCCCeEEEecCCCCHHHHHHHHh---CCEEEEEcCCCcHHHHHHHHHHHHHcCCc-eEEEEeecCCCCcCcCCCCCcEE
Q 026274 68 RFSGANVVELGAGTSLPGLVAAKV---GSNVTLTDDSNRIEVLKNMRRVCEMNKLN-CRVMGLTWGFLDASIFDLNPNII 143 (241)
Q Consensus 68 ~~~~~~VLElGcGtGl~sl~la~~---g~~V~~tD~~~~~~~l~~~~~n~~~n~~~-~~~~~l~w~~~~~~~~~~~fDlI 143 (241)
..+|.+|||+|||+|..++.++.. +.+|+++|+++ .+++.+++|++..++. +++...|+.... ....++||.|
T Consensus 235 ~~~g~~VLD~cagpGgkt~~la~~~~~~g~V~a~Dis~--~rl~~~~~n~~r~g~~~v~~~~~Da~~l~-~~~~~~fD~V 311 (431)
T PRK14903 235 LEPGLRVLDTCAAPGGKTTAIAELMKDQGKILAVDISR--EKIQLVEKHAKRLKLSSIEIKIADAERLT-EYVQDTFDRI 311 (431)
T ss_pred CCCCCEEEEeCCCccHHHHHHHHHcCCCCEEEEEECCH--HHHHHHHHHHHHcCCCeEEEEECchhhhh-hhhhccCCEE
Confidence 346789999999999999988886 45999999995 6999999999988874 566666655432 1224579999
Q ss_pred EEcCCcCCC------c----------------cHHHHHHHHHHHhhcCCCeEEEEEee--ccCchhHHHHHHHH-cCCEE
Q 026274 144 LGADVFYDA------S----------------AFDDLFATITYLLQSSPGSVFITTYH--NRSGHHLIEFLMVK-WGLKC 198 (241)
Q Consensus 144 l~~dvly~~------~----------------~~~~ll~~~~~lL~~~~~~~~~~~~~--~r~~~~~~~~~~~~-~g~~~ 198 (241)
++..+.... + ....++..+.++|++ +|.++|..+. .......+..++++ -+|..
T Consensus 312 l~DaPCsg~G~~~~~p~~~~~~~~~~~~~l~~~Q~~iL~~a~~~Lkp-GG~LvYsTCs~~~eEne~vv~~fl~~~~~~~~ 390 (431)
T PRK14903 312 LVDAPCTSLGTARNHPEVLRRVNKEDFKKLSEIQLRIVSQAWKLLEK-GGILLYSTCTVTKEENTEVVKRFVYEQKDAEV 390 (431)
T ss_pred EECCCCCCCccccCChHHHHhCCHHHHHHHHHHHHHHHHHHHHhcCC-CCEEEEEECCCChhhCHHHHHHHHHhCCCcEE
Confidence 864333211 1 235678888899883 2334443332 22233444545543 46664
Q ss_pred EE
Q 026274 199 VK 200 (241)
Q Consensus 199 ~~ 200 (241)
..
T Consensus 391 ~~ 392 (431)
T PRK14903 391 ID 392 (431)
T ss_pred ec
Confidence 43
|
|
| >PRK04457 spermidine synthase; Provisional | Back alignment and domain information |
|---|
Probab=98.75 E-value=6.2e-08 Score=83.52 Aligned_cols=102 Identities=15% Similarity=0.191 Sum_probs=73.9
Q ss_pred CCCeEEEecCCCCHHHHHHHHh--CCEEEEEcCCCcHHHHHHHHHHHHHcC--CceEEEEeecCCCCcCcCCCCCcEEEE
Q 026274 70 SGANVVELGAGTSLPGLVAAKV--GSNVTLTDDSNRIEVLKNMRRVCEMNK--LNCRVMGLTWGFLDASIFDLNPNIILG 145 (241)
Q Consensus 70 ~~~~VLElGcGtGl~sl~la~~--g~~V~~tD~~~~~~~l~~~~~n~~~n~--~~~~~~~l~w~~~~~~~~~~~fDlIl~ 145 (241)
++++|||||||+|.++..+++. +.+|+++|+++ ++++.++++...++ .++++...|..+.... ...+||+|+.
T Consensus 66 ~~~~vL~IG~G~G~l~~~l~~~~p~~~v~~VEidp--~vi~~A~~~f~~~~~~~rv~v~~~Da~~~l~~-~~~~yD~I~~ 142 (262)
T PRK04457 66 RPQHILQIGLGGGSLAKFIYTYLPDTRQTAVEINP--QVIAVARNHFELPENGERFEVIEADGAEYIAV-HRHSTDVILV 142 (262)
T ss_pred CCCEEEEECCCHhHHHHHHHHhCCCCeEEEEECCH--HHHHHHHHHcCCCCCCCceEEEECCHHHHHHh-CCCCCCEEEE
Confidence 4578999999999999988876 35899999995 79999999876553 4566666554433221 2358999986
Q ss_pred cCCcCCCc------cHHHHHHHHHHHhhcCCCeEEEEEe
Q 026274 146 ADVFYDAS------AFDDLFATITYLLQSSPGSVFITTY 178 (241)
Q Consensus 146 ~dvly~~~------~~~~ll~~~~~lL~~~~~~~~~~~~ 178 (241)
|. |+.. ....+++.+.++|+ ++|++++..
T Consensus 143 -D~-~~~~~~~~~l~t~efl~~~~~~L~--pgGvlvin~ 177 (262)
T PRK04457 143 -DG-FDGEGIIDALCTQPFFDDCRNALS--SDGIFVVNL 177 (262)
T ss_pred -eC-CCCCCCccccCcHHHHHHHHHhcC--CCcEEEEEc
Confidence 33 2211 23789999999998 677777653
|
|
| >PRK04338 N(2),N(2)-dimethylguanosine tRNA methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=98.74 E-value=7.9e-08 Score=87.04 Aligned_cols=97 Identities=18% Similarity=0.226 Sum_probs=72.0
Q ss_pred CCeEEEecCCCCHHHHHHHHh-CC-EEEEEcCCCcHHHHHHHHHHHHHcCCc-eEEEEeecCCCCcCcCCCCCcEEEEcC
Q 026274 71 GANVVELGAGTSLPGLVAAKV-GS-NVTLTDDSNRIEVLKNMRRVCEMNKLN-CRVMGLTWGFLDASIFDLNPNIILGAD 147 (241)
Q Consensus 71 ~~~VLElGcGtGl~sl~la~~-g~-~V~~tD~~~~~~~l~~~~~n~~~n~~~-~~~~~l~w~~~~~~~~~~~fDlIl~~d 147 (241)
+.+|||++||+|..|+.+++. ++ +|++.|+++ ++++.+++|++.|++. ..+...|....... ..+||+|+. |
T Consensus 58 ~~~vLDl~aGsG~~~l~~a~~~~~~~V~a~Din~--~Av~~a~~N~~~N~~~~~~v~~~Da~~~l~~--~~~fD~V~l-D 132 (382)
T PRK04338 58 RESVLDALSASGIRGIRYALETGVEKVTLNDINP--DAVELIKKNLELNGLENEKVFNKDANALLHE--ERKFDVVDI-D 132 (382)
T ss_pred CCEEEECCCcccHHHHHHHHHCCCCEEEEEeCCH--HHHHHHHHHHHHhCCCceEEEhhhHHHHHhh--cCCCCEEEE-C
Confidence 468999999999999999875 43 899999995 6999999999999875 34555554332111 347999998 5
Q ss_pred CcCCCccHHHHHHHHHHHhhcCCCeEEEEE
Q 026274 148 VFYDASAFDDLFATITYLLQSSPGSVFITT 177 (241)
Q Consensus 148 vly~~~~~~~ll~~~~~lL~~~~~~~~~~~ 177 (241)
+. ....++++.....++ ++++++++
T Consensus 133 P~---Gs~~~~l~~al~~~~--~~gilyvS 157 (382)
T PRK04338 133 PF---GSPAPFLDSAIRSVK--RGGLLCVT 157 (382)
T ss_pred CC---CCcHHHHHHHHHHhc--CCCEEEEE
Confidence 52 455677777555555 57777766
|
|
| >COG4122 Predicted O-methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.72 E-value=1.2e-07 Score=79.27 Aligned_cols=115 Identities=14% Similarity=0.156 Sum_probs=84.4
Q ss_pred ccHHHHHHHHHhccCCCCCCeEEEecCCCCHHHHHHHHh-C--CEEEEEcCCCcHHHHHHHHHHHHHcCCceE--EEE-e
Q 026274 53 PCSVILAEYVWQQRYRFSGANVVELGAGTSLPGLVAAKV-G--SNVTLTDDSNRIEVLKNMRRVCEMNKLNCR--VMG-L 126 (241)
Q Consensus 53 ~~s~~L~~~l~~~~~~~~~~~VLElGcGtGl~sl~la~~-g--~~V~~tD~~~~~~~l~~~~~n~~~n~~~~~--~~~-l 126 (241)
+..-.+..+|.+ ....++|||||.++|.-++.+|.. . .+++.+|+++ ++.+.+++|++.-+..-+ ... +
T Consensus 45 ~e~g~~L~~L~~---~~~~k~iLEiGT~~GySal~mA~~l~~~g~l~tiE~~~--e~~~~A~~n~~~ag~~~~i~~~~~g 119 (219)
T COG4122 45 PETGALLRLLAR---LSGPKRILEIGTAIGYSALWMALALPDDGRLTTIERDE--ERAEIARENLAEAGVDDRIELLLGG 119 (219)
T ss_pred hhHHHHHHHHHH---hcCCceEEEeecccCHHHHHHHhhCCCCCeEEEEeCCH--HHHHHHHHHHHHcCCcceEEEEecC
Confidence 444444444443 346789999999999999999985 2 3899999996 799999999999987544 333 3
Q ss_pred ecCCCCcCcCCCCCcEEEEcCCcCCCccHHHHHHHHHHHhhcCCCeEEEEE
Q 026274 127 TWGFLDASIFDLNPNIILGADVFYDASAFDDLFATITYLLQSSPGSVFITT 177 (241)
Q Consensus 127 ~w~~~~~~~~~~~fDlIl~~dvly~~~~~~~ll~~~~~lL~~~~~~~~~~~ 177 (241)
++.+.......++||+|+.- ......+..++.+.++|+ +||++++.
T Consensus 120 dal~~l~~~~~~~fDliFID---adK~~yp~~le~~~~lLr--~GGliv~D 165 (219)
T COG4122 120 DALDVLSRLLDGSFDLVFID---ADKADYPEYLERALPLLR--PGGLIVAD 165 (219)
T ss_pred cHHHHHHhccCCCccEEEEe---CChhhCHHHHHHHHHHhC--CCcEEEEe
Confidence 44443333345799999853 235677888999999998 78888876
|
|
| >PLN02476 O-methyltransferase | Back alignment and domain information |
|---|
Probab=98.71 E-value=1e-07 Score=82.54 Aligned_cols=102 Identities=17% Similarity=0.206 Sum_probs=76.2
Q ss_pred CCCCeEEEecCCCCHHHHHHHHh---CCEEEEEcCCCcHHHHHHHHHHHHHcCCc--eEEEEeecCCCCcCc----CCCC
Q 026274 69 FSGANVVELGAGTSLPGLVAAKV---GSNVTLTDDSNRIEVLKNMRRVCEMNKLN--CRVMGLTWGFLDASI----FDLN 139 (241)
Q Consensus 69 ~~~~~VLElGcGtGl~sl~la~~---g~~V~~tD~~~~~~~l~~~~~n~~~n~~~--~~~~~l~w~~~~~~~----~~~~ 139 (241)
.+.++|||+|+|+|..++.+|+. +.+|+.+|.++ +.++.+++|++..|.. +++...+..+..... ...+
T Consensus 117 ~~ak~VLEIGT~tGySal~lA~al~~~G~V~TiE~d~--e~~~~Ar~n~~~aGl~~~I~li~GdA~e~L~~l~~~~~~~~ 194 (278)
T PLN02476 117 LGAERCIEVGVYTGYSSLAVALVLPESGCLVACERDS--NSLEVAKRYYELAGVSHKVNVKHGLAAESLKSMIQNGEGSS 194 (278)
T ss_pred cCCCeEEEecCCCCHHHHHHHHhCCCCCEEEEEECCH--HHHHHHHHHHHHcCCCCcEEEEEcCHHHHHHHHHhcccCCC
Confidence 45689999999999999999984 34799999995 7999999999999885 555544443322111 1357
Q ss_pred CcEEEEcCCcCCCccHHHHHHHHHHHhhcCCCeEEEEE
Q 026274 140 PNIILGADVFYDASAFDDLFATITYLLQSSPGSVFITT 177 (241)
Q Consensus 140 fDlIl~~dvly~~~~~~~ll~~~~~lL~~~~~~~~~~~ 177 (241)
||+|+.-- ........++.+.++|+ +||++++.
T Consensus 195 FD~VFIDa---~K~~Y~~y~e~~l~lL~--~GGvIV~D 227 (278)
T PLN02476 195 YDFAFVDA---DKRMYQDYFELLLQLVR--VGGVIVMD 227 (278)
T ss_pred CCEEEECC---CHHHHHHHHHHHHHhcC--CCcEEEEe
Confidence 99998532 24567888888889987 67877766
|
|
| >PF01135 PCMT: Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT); InterPro: IPR000682 Protein-L-isoaspartate(D-aspartate) O-methyltransferase (2 | Back alignment and domain information |
|---|
Probab=98.71 E-value=1.9e-07 Score=77.74 Aligned_cols=115 Identities=15% Similarity=0.141 Sum_probs=76.5
Q ss_pred cHHHHHHHHHhccCCCCCCeEEEecCCCCHHHHHHHHh-CC--EEEEEcCCCcHHHHHHHHHHHHHcCC-ceEEEEeecC
Q 026274 54 CSVILAEYVWQQRYRFSGANVVELGAGTSLPGLVAAKV-GS--NVTLTDDSNRIEVLKNMRRVCEMNKL-NCRVMGLTWG 129 (241)
Q Consensus 54 ~s~~L~~~l~~~~~~~~~~~VLElGcGtGl~sl~la~~-g~--~V~~tD~~~~~~~l~~~~~n~~~n~~-~~~~~~l~w~ 129 (241)
++-.+...+.+.....+|.+|||||||||..+-.+|.+ |. +|+++|.++ ++.+.+++|+...+. ++.+...|-.
T Consensus 56 s~P~~~a~~l~~L~l~pg~~VLeIGtGsGY~aAlla~lvg~~g~Vv~vE~~~--~l~~~A~~~l~~~~~~nv~~~~gdg~ 133 (209)
T PF01135_consen 56 SAPSMVARMLEALDLKPGDRVLEIGTGSGYQAALLAHLVGPVGRVVSVERDP--ELAERARRNLARLGIDNVEVVVGDGS 133 (209)
T ss_dssp --HHHHHHHHHHTTC-TT-EEEEES-TTSHHHHHHHHHHSTTEEEEEEESBH--HHHHHHHHHHHHHTTHSEEEEES-GG
T ss_pred hHHHHHHHHHHHHhcCCCCEEEEecCCCcHHHHHHHHhcCccceEEEECccH--HHHHHHHHHHHHhccCceeEEEcchh
Confidence 44444444444455678899999999999999999986 44 799999995 699999999998887 5677666543
Q ss_pred CCCcCcCCCCCcEEEEcCCcCCCccHHHHHHHHHHHhhcCCCeEEEEEeec
Q 026274 130 FLDASIFDLNPNIILGADVFYDASAFDDLFATITYLLQSSPGSVFITTYHN 180 (241)
Q Consensus 130 ~~~~~~~~~~fDlIl~~dvly~~~~~~~ll~~~~~lL~~~~~~~~~~~~~~ 180 (241)
.... ...+||.|+..-.+.. +-..+.+.|+ +||.++++...
T Consensus 134 ~g~~--~~apfD~I~v~~a~~~------ip~~l~~qL~--~gGrLV~pi~~ 174 (209)
T PF01135_consen 134 EGWP--EEAPFDRIIVTAAVPE------IPEALLEQLK--PGGRLVAPIGQ 174 (209)
T ss_dssp GTTG--GG-SEEEEEESSBBSS--------HHHHHTEE--EEEEEEEEESS
T ss_pred hccc--cCCCcCEEEEeeccch------HHHHHHHhcC--CCcEEEEEEcc
Confidence 3221 1247999998765543 2234556677 67888877654
|
1.1.77 from EC) (PCMT) [] (which is also known as L-isoaspartyl protein carboxyl methyltransferase) is an enzyme that catalyses the transfer of a methyl group from S-adenosylmethionine to the free carboxyl groups of D-aspartyl or L-isoaspartyl residues in a variety of peptides and proteins. The enzyme does not act on normal L-aspartyl residues L-isoaspartyl and D-aspartyl are the products of the spontaneous deamidation and/or isomerisation of normal L-aspartyl and L-asparaginyl residues in proteins. PCMT plays a role in the repair and/or degradation of these damaged proteins; the enzymatic methyl esterification of the abnormal residues can lead to their conversion to normal L-aspartyl residues. The SAM domain is present in most of these proteins.; GO: 0004719 protein-L-isoaspartate (D-aspartate) O-methyltransferase activity, 0006464 protein modification process; PDB: 3LBF_A 1DL5_B 1JG3_B 1JG2_A 1JG1_A 1JG4_A 2YXE_A 2PBF_B 1VBF_C 1R18_A .... |
| >PF01596 Methyltransf_3: O-methyltransferase; InterPro: IPR002935 Members of this family are O-methyltransferases | Back alignment and domain information |
|---|
Probab=98.66 E-value=7.1e-08 Score=80.13 Aligned_cols=116 Identities=17% Similarity=0.112 Sum_probs=83.3
Q ss_pred HHHHHHHHHhccCCCCCCeEEEecCCCCHHHHHHHHh---CCEEEEEcCCCcHHHHHHHHHHHHHcCC--ceEEEEeecC
Q 026274 55 SVILAEYVWQQRYRFSGANVVELGAGTSLPGLVAAKV---GSNVTLTDDSNRIEVLKNMRRVCEMNKL--NCRVMGLTWG 129 (241)
Q Consensus 55 s~~L~~~l~~~~~~~~~~~VLElGcGtGl~sl~la~~---g~~V~~tD~~~~~~~l~~~~~n~~~n~~--~~~~~~l~w~ 129 (241)
+..-+++|.......+.++|||||||+|.-++.+|+. +++|+.+|.++ +..+.++++++..+. ++++...+..
T Consensus 30 ~~~~g~lL~~l~~~~~~k~vLEIGt~~GySal~la~~l~~~g~i~tiE~~~--~~~~~A~~~~~~ag~~~~I~~~~gda~ 107 (205)
T PF01596_consen 30 SPETGQLLQMLVRLTRPKRVLEIGTFTGYSALWLAEALPEDGKITTIEIDP--ERAEIARENFRKAGLDDRIEVIEGDAL 107 (205)
T ss_dssp HHHHHHHHHHHHHHHT-SEEEEESTTTSHHHHHHHHTSTTTSEEEEEESSH--HHHHHHHHHHHHTTGGGGEEEEES-HH
T ss_pred CHHHHHHHHHHHHhcCCceEEEeccccccHHHHHHHhhcccceEEEecCcH--HHHHHHHHHHHhcCCCCcEEEEEeccH
Confidence 3344444443333456689999999999999999985 56999999995 799999999998886 4666665554
Q ss_pred CCCcCc----CCCCCcEEEEcCCcCCCccHHHHHHHHHHHhhcCCCeEEEEE
Q 026274 130 FLDASI----FDLNPNIILGADVFYDASAFDDLFATITYLLQSSPGSVFITT 177 (241)
Q Consensus 130 ~~~~~~----~~~~fDlIl~~dvly~~~~~~~ll~~~~~lL~~~~~~~~~~~ 177 (241)
+....+ ..++||+|+.-. ........++.+.++|+ +||++++.
T Consensus 108 ~~l~~l~~~~~~~~fD~VFiDa---~K~~y~~y~~~~~~ll~--~ggvii~D 154 (205)
T PF01596_consen 108 EVLPELANDGEEGQFDFVFIDA---DKRNYLEYFEKALPLLR--PGGVIIAD 154 (205)
T ss_dssp HHHHHHHHTTTTTSEEEEEEES---TGGGHHHHHHHHHHHEE--EEEEEEEE
T ss_pred hhHHHHHhccCCCceeEEEEcc---cccchhhHHHHHhhhcc--CCeEEEEc
Confidence 332211 124799999642 35677788888889998 78888887
|
The family includes also bacterial O-methyltransferases that may be involved in antibiotic production [].; GO: 0008171 O-methyltransferase activity; PDB: 1SUI_C 1SUS_D 3CBG_A 2GPY_B 3TR6_A 2AVD_A 3DUL_B 3DUW_B 2ZTH_A 1VID_A .... |
| >TIGR00308 TRM1 tRNA(guanine-26,N2-N2) methyltransferase | Back alignment and domain information |
|---|
Probab=98.65 E-value=2.6e-07 Score=83.41 Aligned_cols=98 Identities=11% Similarity=0.072 Sum_probs=72.9
Q ss_pred CCeEEEecCCCCHHHHHHHHh--CC-EEEEEcCCCcHHHHHHHHHHHHHcCCc-eEEEEeecCCCCcCcCCCCCcEEEEc
Q 026274 71 GANVVELGAGTSLPGLVAAKV--GS-NVTLTDDSNRIEVLKNMRRVCEMNKLN-CRVMGLTWGFLDASIFDLNPNIILGA 146 (241)
Q Consensus 71 ~~~VLElGcGtGl~sl~la~~--g~-~V~~tD~~~~~~~l~~~~~n~~~n~~~-~~~~~l~w~~~~~~~~~~~fDlIl~~ 146 (241)
+.+|||+.||+|..|+.+++. |+ +|++.|+++ ++++.+++|++.|+.. +.+...|....... ...+||+|..
T Consensus 45 ~~~vLD~faGsG~rgir~a~e~~ga~~Vv~nD~n~--~Av~~i~~N~~~N~~~~~~v~~~Da~~~l~~-~~~~fDvIdl- 120 (374)
T TIGR00308 45 YINIADALSASGIRAIRYAHEIEGVREVFANDINP--KAVESIKNNVEYNSVENIEVPNEDAANVLRY-RNRKFHVIDI- 120 (374)
T ss_pred CCEEEECCCchhHHHHHHHhhCCCCCEEEEEeCCH--HHHHHHHHHHHHhCCCcEEEEchhHHHHHHH-hCCCCCEEEe-
Confidence 358999999999999999997 55 899999995 7999999999999874 56665555433221 1247999987
Q ss_pred CCcCCCccHHHHHHHHHHHhhcCCCeEEEEE
Q 026274 147 DVFYDASAFDDLFATITYLLQSSPGSVFITT 177 (241)
Q Consensus 147 dvly~~~~~~~ll~~~~~lL~~~~~~~~~~~ 177 (241)
|+ |. ...++++.+.+.++ .++++++.
T Consensus 121 DP-fG--s~~~fld~al~~~~--~~glL~vT 146 (374)
T TIGR00308 121 DP-FG--TPAPFVDSAIQASA--ERGLLLVT 146 (374)
T ss_pred CC-CC--CcHHHHHHHHHhcc--cCCEEEEE
Confidence 66 53 44578887777776 44554444
|
This enzyme is responsible for two methylations of a characteristic guanine of most tRNA molecules. The activity has been demonstrated for eukaryotic and archaeal proteins, which are active when expressed in E. coli, a species that lacks this enzyme. At least one Eubacterium, Aquifex aeolicus, has an ortholog, as do all completed archaeal genomes. |
| >TIGR00755 ksgA dimethyladenosine transferase | Back alignment and domain information |
|---|
Probab=98.65 E-value=9.4e-07 Score=75.68 Aligned_cols=86 Identities=14% Similarity=0.117 Sum_probs=60.6
Q ss_pred HHHHHHhccCCCCCCeEEEecCCCCHHHHHHHHhCCEEEEEcCCCcHHHHHHHHHHHHHcCCceEEEEeecCCCCcCcCC
Q 026274 58 LAEYVWQQRYRFSGANVVELGAGTSLPGLVAAKVGSNVTLTDDSNRIEVLKNMRRVCEMNKLNCRVMGLTWGFLDASIFD 137 (241)
Q Consensus 58 L~~~l~~~~~~~~~~~VLElGcGtGl~sl~la~~g~~V~~tD~~~~~~~l~~~~~n~~~n~~~~~~~~l~w~~~~~~~~~ 137 (241)
+.+.+.......++.+|||+|||+|.++..+++.+.+|+++|+++ .+++.++.+... ..++.+...|+.+...+
T Consensus 17 i~~~i~~~~~~~~~~~VLEiG~G~G~lt~~L~~~~~~v~~iE~d~--~~~~~l~~~~~~-~~~v~v~~~D~~~~~~~--- 90 (253)
T TIGR00755 17 VIQKIVEAANVLEGDVVLEIGPGLGALTEPLLKRAKKVTAIEIDP--RLAEILRKLLSL-YERLEVIEGDALKVDLP--- 90 (253)
T ss_pred HHHHHHHhcCCCCcCEEEEeCCCCCHHHHHHHHhCCcEEEEECCH--HHHHHHHHHhCc-CCcEEEEECchhcCChh---
Confidence 344444444445678999999999999999999988999999996 699998887753 33556666565443222
Q ss_pred CCCc---EEEEcCCcCC
Q 026274 138 LNPN---IILGADVFYD 151 (241)
Q Consensus 138 ~~fD---lIl~~dvly~ 151 (241)
.+| +|+++-+ |+
T Consensus 91 -~~d~~~~vvsNlP-y~ 105 (253)
T TIGR00755 91 -DFPKQLKVVSNLP-YN 105 (253)
T ss_pred -HcCCcceEEEcCC-hh
Confidence 355 7776544 44
|
Alternate name: S-adenosylmethionine--6-N',N'-adenosyl (rRNA) dimethyltransferase |
| >PF08704 GCD14: tRNA methyltransferase complex GCD14 subunit; InterPro: IPR014816 GCD14 is a subunit of the tRNA methyltransferase complex and is required for 1-methyladenosine modification and maturation of initiator methionyl-tRNA [] | Back alignment and domain information |
|---|
Probab=98.64 E-value=6e-07 Score=76.53 Aligned_cols=130 Identities=15% Similarity=0.127 Sum_probs=84.5
Q ss_pred HHhccCCCCCCeEEEecCCCCHHHHHHHHh-C--CEEEEEcCCCcHHHHHHHHHHHHHcCC--ceEEEEeecCCC-CcCc
Q 026274 62 VWQQRYRFSGANVVELGAGTSLPGLVAAKV-G--SNVTLTDDSNRIEVLKNMRRVCEMNKL--NCRVMGLTWGFL-DASI 135 (241)
Q Consensus 62 l~~~~~~~~~~~VLElGcGtGl~sl~la~~-g--~~V~~tD~~~~~~~l~~~~~n~~~n~~--~~~~~~l~w~~~-~~~~ 135 (241)
|....+..+|.+|||-|.|+|.++.++++. | .+|.-.|..+ +.++.+++|++.+++ ++++..-|..+. ....
T Consensus 32 I~~~l~i~pG~~VlEaGtGSG~lt~~l~r~v~p~G~v~t~E~~~--~~~~~A~~n~~~~gl~~~v~~~~~Dv~~~g~~~~ 109 (247)
T PF08704_consen 32 ILMRLDIRPGSRVLEAGTGSGSLTHALARAVGPTGHVYTYEFRE--DRAEKARKNFERHGLDDNVTVHHRDVCEEGFDEE 109 (247)
T ss_dssp HHHHTT--TT-EEEEE--TTSHHHHHHHHHHTTTSEEEEEESSH--HHHHHHHHHHHHTTCCTTEEEEES-GGCG--STT
T ss_pred HHHHcCCCCCCEEEEecCCcHHHHHHHHHHhCCCeEEEccccCH--HHHHHHHHHHHHcCCCCCceeEecceeccccccc
Confidence 344456678999999999999999999985 4 3899999995 799999999999987 467777776432 1112
Q ss_pred CCCCCcEEEEcCCcCCCccHHHHHHHHHHHh-hcCCCeEEEEEeeccCchhHHH--HHHHHcCCEEEEEe
Q 026274 136 FDLNPNIILGADVFYDASAFDDLFATITYLL-QSSPGSVFITTYHNRSGHHLIE--FLMVKWGLKCVKLV 202 (241)
Q Consensus 136 ~~~~fDlIl~~dvly~~~~~~~ll~~~~~lL-~~~~~~~~~~~~~~r~~~~~~~--~~~~~~g~~~~~i~ 202 (241)
.+..+|.|+. +.+.+-..+..+.+.| + +||. +++|.+ .-.+... ..+++.||....+.
T Consensus 110 ~~~~~DavfL-----Dlp~Pw~~i~~~~~~L~~--~gG~-i~~fsP-~ieQv~~~~~~L~~~gf~~i~~~ 170 (247)
T PF08704_consen 110 LESDFDAVFL-----DLPDPWEAIPHAKRALKK--PGGR-ICCFSP-CIEQVQKTVEALREHGFTDIETV 170 (247)
T ss_dssp -TTSEEEEEE-----ESSSGGGGHHHHHHHE-E--EEEE-EEEEES-SHHHHHHHHHHHHHTTEEEEEEE
T ss_pred ccCcccEEEE-----eCCCHHHHHHHHHHHHhc--CCce-EEEECC-CHHHHHHHHHHHHHCCCeeeEEE
Confidence 2357999885 6777888888899999 5 3332 222221 1122222 23567899776653
|
; GO: 0016429 tRNA (adenine-N1-)-methyltransferase activity, 0030488 tRNA methylation; PDB: 2YVL_C 1YB2_A 2B25_B 1O54_A 2PWY_B 1I9G_A 3LGA_B 3LHD_C 3MB5_A. |
| >PRK03612 spermidine synthase; Provisional | Back alignment and domain information |
|---|
Probab=98.63 E-value=2.7e-07 Score=86.90 Aligned_cols=126 Identities=16% Similarity=0.068 Sum_probs=79.8
Q ss_pred CCCeEEEecCCCCHHHHHHHHhC--CEEEEEcCCCcHHHHHHHHHHHHH---c-----CCceEEEEeecCCCCcCcCCCC
Q 026274 70 SGANVVELGAGTSLPGLVAAKVG--SNVTLTDDSNRIEVLKNMRRVCEM---N-----KLNCRVMGLTWGFLDASIFDLN 139 (241)
Q Consensus 70 ~~~~VLElGcGtGl~sl~la~~g--~~V~~tD~~~~~~~l~~~~~n~~~---n-----~~~~~~~~l~w~~~~~~~~~~~ 139 (241)
+.++||+||||+|..+..+++.+ .+|+++|+++ ++++.+++|... | +.++++...|..+.... .+++
T Consensus 297 ~~~rVL~IG~G~G~~~~~ll~~~~v~~v~~VEid~--~vi~~ar~~~~l~~~~~~~~~dprv~vi~~Da~~~l~~-~~~~ 373 (521)
T PRK03612 297 RPRRVLVLGGGDGLALREVLKYPDVEQVTLVDLDP--AMTELARTSPALRALNGGALDDPRVTVVNDDAFNWLRK-LAEK 373 (521)
T ss_pred CCCeEEEEcCCccHHHHHHHhCCCcCeEEEEECCH--HHHHHHHhCCcchhhhccccCCCceEEEEChHHHHHHh-CCCC
Confidence 56799999999999998888874 4899999996 799999985322 1 23455555443332211 2358
Q ss_pred CcEEEEcCCcCCCc-----cHHHHHHHHHHHhhcCCCeEEEEEeeccC-ch---hHHHHHHHHcCCEEEE
Q 026274 140 PNIILGADVFYDAS-----AFDDLFATITYLLQSSPGSVFITTYHNRS-GH---HLIEFLMVKWGLKCVK 200 (241)
Q Consensus 140 fDlIl~~dvly~~~-----~~~~ll~~~~~lL~~~~~~~~~~~~~~r~-~~---~~~~~~~~~~g~~~~~ 200 (241)
||+|++.-.-...+ .-+.+++.++++|+ ++|++++...... .. ......+++.||.+..
T Consensus 374 fDvIi~D~~~~~~~~~~~L~t~ef~~~~~~~L~--pgG~lv~~~~~~~~~~~~~~~i~~~l~~~gf~v~~ 441 (521)
T PRK03612 374 FDVIIVDLPDPSNPALGKLYSVEFYRLLKRRLA--PDGLLVVQSTSPYFAPKAFWSIEATLEAAGLATTP 441 (521)
T ss_pred CCEEEEeCCCCCCcchhccchHHHHHHHHHhcC--CCeEEEEecCCcccchHHHHHHHHHHHHcCCEEEE
Confidence 99999852211111 12457889999998 6777776432211 11 1223346788894433
|
|
| >PF10672 Methyltrans_SAM: S-adenosylmethionine-dependent methyltransferase; InterPro: IPR019614 Members of this entry are S-adenosylmethionine-dependent methyltransferases from gamma-proteobacterial species | Back alignment and domain information |
|---|
Probab=98.62 E-value=9.5e-08 Score=83.06 Aligned_cols=117 Identities=18% Similarity=0.170 Sum_probs=78.4
Q ss_pred CCCCeEEEecCCCCHHHHHHHHhCC-EEEEEcCCCcHHHHHHHHHHHHHcCCc---eEEEEeecCCCCcCc-CCCCCcEE
Q 026274 69 FSGANVVELGAGTSLPGLVAAKVGS-NVTLTDDSNRIEVLKNMRRVCEMNKLN---CRVMGLTWGFLDASI-FDLNPNII 143 (241)
Q Consensus 69 ~~~~~VLElGcGtGl~sl~la~~g~-~V~~tD~~~~~~~l~~~~~n~~~n~~~---~~~~~l~w~~~~~~~-~~~~fDlI 143 (241)
.+|++||++-|=||-+|++++..|| +|+.+|.|. .+++.+++|+.+|+++ +++...|..+..... ...+||+|
T Consensus 122 ~~gkrvLnlFsYTGgfsv~Aa~gGA~~v~~VD~S~--~al~~a~~N~~lNg~~~~~~~~~~~Dvf~~l~~~~~~~~fD~I 199 (286)
T PF10672_consen 122 AKGKRVLNLFSYTGGFSVAAAAGGAKEVVSVDSSK--RALEWAKENAALNGLDLDRHRFIQGDVFKFLKRLKKGGRFDLI 199 (286)
T ss_dssp CTTCEEEEET-TTTHHHHHHHHTTESEEEEEES-H--HHHHHHHHHHHHTT-CCTCEEEEES-HHHHHHHHHHTT-EEEE
T ss_pred cCCCceEEecCCCCHHHHHHHHCCCCEEEEEeCCH--HHHHHHHHHHHHcCCCccceEEEecCHHHHHHHHhcCCCCCEE
Confidence 4689999999999999999999998 799999995 6999999999999964 456655544322111 23589999
Q ss_pred EEcCCcCCC------ccHHHHHHHHHHHhhcCCCeEEEEE-eeccCchhHHHH
Q 026274 144 LGADVFYDA------SAFDDLFATITYLLQSSPGSVFITT-YHNRSGHHLIEF 189 (241)
Q Consensus 144 l~~dvly~~------~~~~~ll~~~~~lL~~~~~~~~~~~-~~~r~~~~~~~~ 189 (241)
|+-++-|-. .++..|+..+.++|+ +||.++++ +...-..+.+..
T Consensus 200 IlDPPsF~k~~~~~~~~y~~L~~~a~~ll~--~gG~l~~~scs~~i~~~~l~~ 250 (286)
T PF10672_consen 200 ILDPPSFAKSKFDLERDYKKLLRRAMKLLK--PGGLLLTCSCSHHISPDFLLE 250 (286)
T ss_dssp EE--SSEESSTCEHHHHHHHHHHHHHHTEE--EEEEEEEEE--TTS-HHHHHH
T ss_pred EECCCCCCCCHHHHHHHHHHHHHHHHHhcC--CCCEEEEEcCCcccCHHHHHH
Confidence 988777653 256778888888887 56655544 333333343333
|
The diversity in the roles of methylation is matched by the almost bewildering number of methyltransferase enzymes that catalyse the methylation reaction. Although several classes of methyltransferase enzymes are known, the great majority of methylation reactions are catalysed by the S-adenosylmethionine-dependent methyltransferases. SAM (S-adenosylmethionine, also known as AdoMet) is well known as the methyl donor for the majority of methyltransferases that modify DNA, RNA, histones and other proteins, dictating replicational, transcriptional and translational fidelity, mismatch repair, chromatin modelling, epigenetic modifications and imprinting [].; GO: 0008168 methyltransferase activity; PDB: 2IGT_B 1WXX_A 1WXW_D 2CWW_B 2AS0_B 3V8V_B 3V97_A 3C0K_A 2B78_A 3LDF_A. |
| >PRK13256 thiopurine S-methyltransferase; Reviewed | Back alignment and domain information |
|---|
Probab=98.61 E-value=7.9e-07 Score=74.83 Aligned_cols=129 Identities=8% Similarity=-0.065 Sum_probs=85.5
Q ss_pred CcceEEeccHHHHHHHHHhccCCCCCCeEEEecCCCCHHHHHHHHhCCEEEEEcCCCcHHHHHHHHHHH-----------
Q 026274 46 EYGLFVWPCSVILAEYVWQQRYRFSGANVVELGAGTSLPGLVAAKVGSNVTLTDDSNRIEVLKNMRRVC----------- 114 (241)
Q Consensus 46 ~~g~~~W~~s~~L~~~l~~~~~~~~~~~VLElGcGtGl~sl~la~~g~~V~~tD~~~~~~~l~~~~~n~----------- 114 (241)
.+|+..=...-.|.+|+..... .++.+||..|||.|.-.+.||.+|++|+++|+|+ .+++.+.+..
T Consensus 20 ~~~f~~~~pnp~L~~~~~~l~~-~~~~rvLvPgCGkg~D~~~LA~~G~~V~GvDlS~--~Ai~~~~~e~~~~~~~~~~~~ 96 (226)
T PRK13256 20 DVGFCQESPNEFLVKHFSKLNI-NDSSVCLIPMCGCSIDMLFFLSKGVKVIGIELSE--KAVLSFFSQNTINYEVIHGND 96 (226)
T ss_pred CCCCccCCCCHHHHHHHHhcCC-CCCCeEEEeCCCChHHHHHHHhCCCcEEEEecCH--HHHHHHHHHcCCCcceecccc
Confidence 4444333445566677655332 2567999999999999999999999999999996 5777654411
Q ss_pred --HHcCCceEEEEeecCCCCcC-cCCCCCcEEEEcCCcC--CCccHHHHHHHHHHHhhcCCCeEEEEEe
Q 026274 115 --EMNKLNCRVMGLTWGFLDAS-IFDLNPNIILGADVFY--DASAFDDLFATITYLLQSSPGSVFITTY 178 (241)
Q Consensus 115 --~~n~~~~~~~~l~w~~~~~~-~~~~~fDlIl~~dvly--~~~~~~~ll~~~~~lL~~~~~~~~~~~~ 178 (241)
...+..+++...|+.+.... ....+||+|+=.-++. .++.-...++.+.++|+++ +..+++.+
T Consensus 97 ~~~~~~~~i~~~~gD~f~l~~~~~~~~~fD~VyDra~~~Alpp~~R~~Y~~~l~~lL~pg-g~llll~~ 164 (226)
T PRK13256 97 YKLYKGDDIEIYVADIFNLPKIANNLPVFDIWYDRGAYIALPNDLRTNYAKMMLEVCSNN-TQILLLVM 164 (226)
T ss_pred cceeccCceEEEEccCcCCCccccccCCcCeeeeehhHhcCCHHHHHHHHHHHHHHhCCC-cEEEEEEE
Confidence 01234667777776654321 1124799987554443 4567788889999999853 33444443
|
|
| >KOG2899 consensus Predicted methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.59 E-value=3.2e-07 Score=76.85 Aligned_cols=112 Identities=16% Similarity=0.213 Sum_probs=77.8
Q ss_pred CCCCCCeEEEecCCCCHHHHHHHHh-CC-EEEEEcCCCcHHHHHHHHHHHHHcCC-----c-------------------
Q 026274 67 YRFSGANVVELGAGTSLPGLVAAKV-GS-NVTLTDDSNRIEVLKNMRRVCEMNKL-----N------------------- 120 (241)
Q Consensus 67 ~~~~~~~VLElGcGtGl~sl~la~~-g~-~V~~tD~~~~~~~l~~~~~n~~~n~~-----~------------------- 120 (241)
..+.++.+||+||-+|.+++.+|+. |+ .|+++||++ -+++.|+++++.-.- .
T Consensus 55 ~~f~~~~~LDIGCNsG~lt~~iak~F~~r~iLGvDID~--~LI~~Ark~~r~~~~~~~~~~~~~~~~~~~~~~~is~~~~ 132 (288)
T KOG2899|consen 55 DWFEPKQALDIGCNSGFLTLSIAKDFGPRRILGVDIDP--VLIQRARKEIRFPCDHETEVSGKFPASFGVQFGPISQRNE 132 (288)
T ss_pred cccCcceeEeccCCcchhHHHHHHhhccceeeEeeccH--HHHHHHHHhccccccccccccCCCcccccccccccccccc
Confidence 4567889999999999999999995 66 799999996 488999988764210 0
Q ss_pred ------------eEEE----EeecCCCCcCcCCCCCcEEEEcCCcC------CCccHHHHHHHHHHHhhcCCCeEEEEEe
Q 026274 121 ------------CRVM----GLTWGFLDASIFDLNPNIILGADVFY------DASAFDDLFATITYLLQSSPGSVFITTY 178 (241)
Q Consensus 121 ------------~~~~----~l~w~~~~~~~~~~~fDlIl~~dvly------~~~~~~~ll~~~~~lL~~~~~~~~~~~~ 178 (241)
+.++ .++-.++. ......||+|+|--+-- +.+-+..++..+.++|. |||++++..
T Consensus 133 a~~a~t~~~p~n~~f~~~n~vle~~dfl-~~~~~~fDiIlcLSiTkWIHLNwgD~GL~~ff~kis~ll~--pgGiLvvEP 209 (288)
T KOG2899|consen 133 ADRAFTTDFPDNVWFQKENYVLESDDFL-DMIQPEFDIILCLSITKWIHLNWGDDGLRRFFRKISSLLH--PGGILVVEP 209 (288)
T ss_pred ccccccccCCcchhcccccEEEecchhh-hhccccccEEEEEEeeeeEecccccHHHHHHHHHHHHhhC--cCcEEEEcC
Confidence 0000 01111111 11234799999876653 35678999999999998 788888875
Q ss_pred eccCc
Q 026274 179 HNRSG 183 (241)
Q Consensus 179 ~~r~~ 183 (241)
.....
T Consensus 210 QpWks 214 (288)
T KOG2899|consen 210 QPWKS 214 (288)
T ss_pred CchHH
Confidence 55443
|
|
| >PF05724 TPMT: Thiopurine S-methyltransferase (TPMT); InterPro: IPR008854 This family consists of thiopurine S-methyltransferase proteins from both eukaryotes and prokaryotes | Back alignment and domain information |
|---|
Probab=98.58 E-value=9.1e-07 Score=74.23 Aligned_cols=119 Identities=14% Similarity=-0.000 Sum_probs=77.7
Q ss_pred cceEEeccHHHHHHHHHhccCCCCCCeEEEecCCCCHHHHHHHHhCCEEEEEcCCCcHHHHHHHH-HHHH-Hc-------
Q 026274 47 YGLFVWPCSVILAEYVWQQRYRFSGANVVELGAGTSLPGLVAAKVGSNVTLTDDSNRIEVLKNMR-RVCE-MN------- 117 (241)
Q Consensus 47 ~g~~~W~~s~~L~~~l~~~~~~~~~~~VLElGcGtGl~sl~la~~g~~V~~tD~~~~~~~l~~~~-~n~~-~n------- 117 (241)
+|+..=..+..|.+|+... ....+.+||..|||.|.-.+.||..|.+|+++|+++ .+++.+. +|.. .+
T Consensus 15 ~~w~~~~~~p~L~~~~~~l-~~~~~~rvLvPgCG~g~D~~~La~~G~~VvGvDls~--~Ai~~~~~e~~~~~~~~~~~~~ 91 (218)
T PF05724_consen 15 TPWDQGEPNPALVEYLDSL-ALKPGGRVLVPGCGKGYDMLWLAEQGHDVVGVDLSP--TAIEQAFEENNLEPTVTSVGGF 91 (218)
T ss_dssp -TT--TTSTHHHHHHHHHH-TTSTSEEEEETTTTTSCHHHHHHHTTEEEEEEES-H--HHHHHHHHHCTTEEECTTCTTE
T ss_pred CCCCCCCCCHHHHHHHHhc-CCCCCCeEEEeCCCChHHHHHHHHCCCeEEEEecCH--HHHHHHHHHhccCCCcccccce
Confidence 4443334477788888762 234567999999999999999999999999999996 5777663 2221 11
Q ss_pred ----CCceEEEEeecCCCCcCcCCCCCcEEEEcCCc--CCCccHHHHHHHHHHHhhcC
Q 026274 118 ----KLNCRVMGLTWGFLDASIFDLNPNIILGADVF--YDASAFDDLFATITYLLQSS 169 (241)
Q Consensus 118 ----~~~~~~~~l~w~~~~~~~~~~~fDlIl~~dvl--y~~~~~~~ll~~~~~lL~~~ 169 (241)
..++++...|.-+.... ..++||+|+=.-++ -.++.-+.-.+.+.++|+++
T Consensus 92 ~~~~~~~i~~~~gDfF~l~~~-~~g~fD~iyDr~~l~Alpp~~R~~Ya~~l~~ll~p~ 148 (218)
T PF05724_consen 92 KRYQAGRITIYCGDFFELPPE-DVGKFDLIYDRTFLCALPPEMRERYAQQLASLLKPG 148 (218)
T ss_dssp EEETTSSEEEEES-TTTGGGS-CHHSEEEEEECSSTTTS-GGGHHHHHHHHHHCEEEE
T ss_pred eeecCCceEEEEcccccCChh-hcCCceEEEEecccccCCHHHHHHHHHHHHHHhCCC
Confidence 01345555555443222 11379999855544 34678888999999999843
|
Thiopurine S-methyltransferase (TPMT) is a cytosolic enzyme that catalyses S-methylation of aromatic and heterocyclic sulphydryl compounds, including anticancer and immunosuppressive thiopurines [].; GO: 0008119 thiopurine S-methyltransferase activity, 0008152 metabolic process, 0005737 cytoplasm; PDB: 1PJZ_A 2H11_A 2BZG_A 3LCC_A 3BGD_A 2GB4_A 3BGI_B. |
| >PF01861 DUF43: Protein of unknown function DUF43; InterPro: IPR002723 This family of prokaryotic proteins have not been characterised | Back alignment and domain information |
|---|
Probab=98.57 E-value=2.3e-06 Score=72.00 Aligned_cols=153 Identities=14% Similarity=0.168 Sum_probs=98.7
Q ss_pred CCcceEEeccHHHHHHHHHhccCCCCCCeEEEecCCCCHHHHHHHHh--CCEEEEEcCCCcHHHHHHHHHHHHHcCCceE
Q 026274 45 EEYGLFVWPCSVILAEYVWQQRYRFSGANVVELGAGTSLPGLVAAKV--GSNVTLTDDSNRIEVLKNMRRVCEMNKLNCR 122 (241)
Q Consensus 45 ~~~g~~~W~~s~~L~~~l~~~~~~~~~~~VLElGcGtGl~sl~la~~--g~~V~~tD~~~~~~~l~~~~~n~~~n~~~~~ 122 (241)
-+.+..+++.++.=+.|+.+.. ...|++||=+|=+ =+.|+++|.. ..+|+..|+++ .+++.+++.++..+++++
T Consensus 20 ~DQ~~~T~eT~~~Ra~~~~~~g-dL~gk~il~lGDD-DLtSlA~al~~~~~~I~VvDiDe--Rll~fI~~~a~~~gl~i~ 95 (243)
T PF01861_consen 20 LDQGYATPETTLRRAALMAERG-DLEGKRILFLGDD-DLTSLALALTGLPKRITVVDIDE--RLLDFINRVAEEEGLPIE 95 (243)
T ss_dssp GT---B-HHHHHHHHHHHHHTT--STT-EEEEES-T-T-HHHHHHHHT--SEEEEE-S-H--HHHHHHHHHHHHHT--EE
T ss_pred cccccccHHHHHHHHHHHHhcC-cccCCEEEEEcCC-cHHHHHHHhhCCCCeEEEEEcCH--HHHHHHHHHHHHcCCceE
Confidence 3677888899999889988754 4689999999833 3777777765 45999999996 599999999999999999
Q ss_pred EEEeecCCCCcCcCCCCCcEEEEcCCcCCCccHHHHHHHHHHHhhcCCCeEEEEEeeccCch--h--HHHHHHHHcCCEE
Q 026274 123 VMGLTWGFLDASIFDLNPNIILGADVFYDASAFDDLFATITYLLQSSPGSVFITTYHNRSGH--H--LIEFLMVKWGLKC 198 (241)
Q Consensus 123 ~~~l~w~~~~~~~~~~~fDlIl~~dvly~~~~~~~ll~~~~~lL~~~~~~~~~~~~~~r~~~--~--~~~~~~~~~g~~~ 198 (241)
+...|..+...+...++||+++ .|+.|..+.+.-++..--..|+ ++|+..++++..+... . .++.+.-+.||-+
T Consensus 96 ~~~~DlR~~LP~~~~~~fD~f~-TDPPyT~~G~~LFlsRgi~~Lk-~~g~~gy~~~~~~~~s~~~~~~~Q~~l~~~gl~i 173 (243)
T PF01861_consen 96 AVHYDLRDPLPEELRGKFDVFF-TDPPYTPEGLKLFLSRGIEALK-GEGCAGYFGFTHKEASPDKWLEVQRFLLEMGLVI 173 (243)
T ss_dssp EE---TTS---TTTSS-BSEEE-E---SSHHHHHHHHHHHHHTB--STT-EEEEEE-TTT--HHHHHHHHHHHHTS--EE
T ss_pred EEEecccccCCHHHhcCCCEEE-eCCCCCHHHHHHHHHHHHHHhC-CCCceEEEEEecCcCcHHHHHHHHHHHHHCCcCH
Confidence 9999998877666678999998 6889999999999988888887 4566778887776532 1 2344455899999
Q ss_pred EEEec
Q 026274 199 VKLVD 203 (241)
Q Consensus 199 ~~i~~ 203 (241)
+.+..
T Consensus 174 ~dii~ 178 (243)
T PF01861_consen 174 TDIIP 178 (243)
T ss_dssp EEEEE
T ss_pred HHHHh
Confidence 98843
|
All the members are 350-400 amino acids long.; PDB: 2QM3_A. |
| >PRK01581 speE spermidine synthase; Validated | Back alignment and domain information |
|---|
Probab=98.55 E-value=9.2e-07 Score=79.00 Aligned_cols=125 Identities=20% Similarity=0.154 Sum_probs=79.1
Q ss_pred CCCeEEEecCCCCHHHHHHHHhC--CEEEEEcCCCcHHHHHHHHHHHH---H-----cCCceEEEEeecCCCCcCcCCCC
Q 026274 70 SGANVVELGAGTSLPGLVAAKVG--SNVTLTDDSNRIEVLKNMRRVCE---M-----NKLNCRVMGLTWGFLDASIFDLN 139 (241)
Q Consensus 70 ~~~~VLElGcGtGl~sl~la~~g--~~V~~tD~~~~~~~l~~~~~n~~---~-----n~~~~~~~~l~w~~~~~~~~~~~ 139 (241)
..++||+||||+|.....+.+.. .+|+++|+++ +|++.++..-. . .+.++++...|..+.... ...+
T Consensus 150 ~PkrVLIIGgGdG~tlrelLk~~~v~~It~VEIDp--eVIelAr~~~~L~~~~~~~~~DpRV~vvi~Da~~fL~~-~~~~ 226 (374)
T PRK01581 150 DPKRVLILGGGDGLALREVLKYETVLHVDLVDLDG--SMINMARNVPELVSLNKSAFFDNRVNVHVCDAKEFLSS-PSSL 226 (374)
T ss_pred CCCEEEEECCCHHHHHHHHHhcCCCCeEEEEeCCH--HHHHHHHhccccchhccccCCCCceEEEECcHHHHHHh-cCCC
Confidence 45799999999998888777764 4899999995 79999886211 1 233555555554433222 2458
Q ss_pred CcEEEEcCCcCCCc-------cHHHHHHHHHHHhhcCCCeEEEEEeeccCch-hH---HHHHHHHcCCEEEEE
Q 026274 140 PNIILGADVFYDAS-------AFDDLFATITYLLQSSPGSVFITTYHNRSGH-HL---IEFLMVKWGLKCVKL 201 (241)
Q Consensus 140 fDlIl~~dvly~~~-------~~~~ll~~~~~lL~~~~~~~~~~~~~~r~~~-~~---~~~~~~~~g~~~~~i 201 (241)
||+|+.. + .++. .-..+++.+++.|+ |||++++-....... .. +...+++.++.+...
T Consensus 227 YDVIIvD-l-~DP~~~~~~~LyT~EFy~~~~~~Lk--PgGV~V~Qs~sp~~~~~~~~~i~~tL~~af~~v~~y 295 (374)
T PRK01581 227 YDVIIID-F-PDPATELLSTLYTSELFARIATFLT--EDGAFVCQSNSPADAPLVYWSIGNTIEHAGLTVKSY 295 (374)
T ss_pred ccEEEEc-C-CCccccchhhhhHHHHHHHHHHhcC--CCcEEEEecCChhhhHHHHHHHHHHHHHhCCceEEE
Confidence 9999964 2 1211 12568899999998 677766543221111 11 223357778877655
|
|
| >TIGR00417 speE spermidine synthase | Back alignment and domain information |
|---|
Probab=98.55 E-value=7.9e-07 Score=76.95 Aligned_cols=103 Identities=13% Similarity=0.046 Sum_probs=68.0
Q ss_pred CCCeEEEecCCCCHHHHHHHHhC--CEEEEEcCCCcHHHHHHHHHHHHHcC-----CceEEEEeecCCCCcCcCCCCCcE
Q 026274 70 SGANVVELGAGTSLPGLVAAKVG--SNVTLTDDSNRIEVLKNMRRVCEMNK-----LNCRVMGLTWGFLDASIFDLNPNI 142 (241)
Q Consensus 70 ~~~~VLElGcGtGl~sl~la~~g--~~V~~tD~~~~~~~l~~~~~n~~~n~-----~~~~~~~l~w~~~~~~~~~~~fDl 142 (241)
+.++||+||||+|.++..+++.. .+|+++|+++ ++++.++++....+ .++++...|..+... ....+||+
T Consensus 72 ~p~~VL~iG~G~G~~~~~ll~~~~~~~v~~veid~--~vi~~a~~~~~~~~~~~~~~~v~i~~~D~~~~l~-~~~~~yDv 148 (270)
T TIGR00417 72 NPKHVLVIGGGDGGVLREVLKHKSVEKATLVDIDE--KVIELSKKFLPSLAGSYDDPRVDLQIDDGFKFLA-DTENTFDV 148 (270)
T ss_pred CCCEEEEEcCCchHHHHHHHhCCCcceEEEEeCCH--HHHHHHHHHhHhhcccccCCceEEEECchHHHHH-hCCCCccE
Confidence 45699999999998888877764 3899999995 69999998764322 234444433222111 12458999
Q ss_pred EEEcCCc--CCCcc--HHHHHHHHHHHhhcCCCeEEEEE
Q 026274 143 ILGADVF--YDASA--FDDLFATITYLLQSSPGSVFITT 177 (241)
Q Consensus 143 Il~~dvl--y~~~~--~~~ll~~~~~lL~~~~~~~~~~~ 177 (241)
|+..-.- ..... ...+++.+.++|+ ++|++++.
T Consensus 149 Ii~D~~~~~~~~~~l~~~ef~~~~~~~L~--pgG~lv~~ 185 (270)
T TIGR00417 149 IIVDSTDPVGPAETLFTKEFYELLKKALN--EDGIFVAQ 185 (270)
T ss_pred EEEeCCCCCCcccchhHHHHHHHHHHHhC--CCcEEEEc
Confidence 9974331 11111 4677889999998 66766654
|
the SpeE subunit of spermidine synthase catalysesthe reaction (putrescine + S-adenosylmethioninamine = spermidine + 5'-methylthioadenosine) and is involved in polyamine biosynthesis and in the biosynthesis of spermidine from arganine. The region between residues 77 and 120 of the seed alignment is thought to be involved in binding to decarboxylated SAM. |
| >PF00891 Methyltransf_2: O-methyltransferase; InterPro: IPR001077 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals | Back alignment and domain information |
|---|
Probab=98.50 E-value=1.5e-06 Score=73.69 Aligned_cols=99 Identities=13% Similarity=0.122 Sum_probs=72.0
Q ss_pred cCCCCCCeEEEecCCCCHHHHHHHHh--CCEEEEEcCCCcHHHHHHHHHHHHHcCCceEEEEeecCCCCcCcCCCCCcEE
Q 026274 66 RYRFSGANVVELGAGTSLPGLVAAKV--GSNVTLTDDSNRIEVLKNMRRVCEMNKLNCRVMGLTWGFLDASIFDLNPNII 143 (241)
Q Consensus 66 ~~~~~~~~VLElGcGtGl~sl~la~~--g~~V~~tD~~~~~~~l~~~~~n~~~n~~~~~~~~l~w~~~~~~~~~~~fDlI 143 (241)
......++|+|||+|+|..+..+++. +.+++..|.. ++++.+++ ..++++...|+.+ +. +. +|++
T Consensus 96 ~d~~~~~~vvDvGGG~G~~~~~l~~~~P~l~~~v~Dlp---~v~~~~~~-----~~rv~~~~gd~f~---~~-P~-~D~~ 162 (241)
T PF00891_consen 96 FDFSGFKTVVDVGGGSGHFAIALARAYPNLRATVFDLP---EVIEQAKE-----ADRVEFVPGDFFD---PL-PV-ADVY 162 (241)
T ss_dssp STTTTSSEEEEET-TTSHHHHHHHHHSTTSEEEEEE-H---HHHCCHHH-----TTTEEEEES-TTT---CC-SS-ESEE
T ss_pred ccccCccEEEeccCcchHHHHHHHHHCCCCcceeeccH---hhhhcccc-----ccccccccccHHh---hh-cc-ccce
Confidence 33345578999999999999999987 4489999994 68887777 5567777777652 32 23 9999
Q ss_pred EEcCCcCC--CccHHHHHHHHHHHhhcCCCeEEEEE
Q 026274 144 LGADVFYD--ASAFDDLFATITYLLQSSPGSVFITT 177 (241)
Q Consensus 144 l~~dvly~--~~~~~~ll~~~~~lL~~~~~~~~~~~ 177 (241)
+.+.++++ .+....+++.+.+.|+|++.+.+++.
T Consensus 163 ~l~~vLh~~~d~~~~~iL~~~~~al~pg~~g~llI~ 198 (241)
T PF00891_consen 163 LLRHVLHDWSDEDCVKILRNAAAALKPGKDGRLLII 198 (241)
T ss_dssp EEESSGGGS-HHHHHHHHHHHHHHSEECTTEEEEEE
T ss_pred eeehhhhhcchHHHHHHHHHHHHHhCCCCCCeEEEE
Confidence 99999976 46778899999999985422544433
|
The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. This domain includes a range of O-methyltransferases some of which utilise S-adenosyl methionine as substrate []. In prokaryotes, the major role of DNA methylation is to protect host DNA against degradation by restriction enzymes. In eukaryotes, DNA methylation has been implicated in the control of several cellular processes, including differentiation, gene regulation, and embryonic development. O-methyltransferases have a common catalytic domain structure, which might be universal among S-adenosyl-L-methionine (AdoMet)-dependent methyltransferases []. Comparative analysis of the predicted amino acid sequences of a number of plant O-methyltransferase cDNA clones show that they share some 32-71% sequence identity, and can be grouped according to the different compounds they utilise as substrates [].; GO: 0008171 O-methyltransferase activity; PDB: 1FPQ_A 1FP1_D 3P9K_B 3P9I_D 3P9C_A 3I53_A 3I5U_A 3I64_A 3I58_A 1ZG3_A .... |
| >COG1041 Predicted DNA modification methylase [DNA replication, recombination, and repair] | Back alignment and domain information |
|---|
Probab=98.49 E-value=2.8e-06 Score=75.05 Aligned_cols=138 Identities=17% Similarity=0.156 Sum_probs=99.7
Q ss_pred HHHHHHHHhccCCCCCCeEEEecCCCCHHHHHHHHhCCEEEEEcCCCcHHHHHHHHHHHHHcCCc-eEEEEe-ecCCCCc
Q 026274 56 VILAEYVWQQRYRFSGANVVELGAGTSLPGLVAAKVGSNVTLTDDSNRIEVLKNMRRVCEMNKLN-CRVMGL-TWGFLDA 133 (241)
Q Consensus 56 ~~L~~~l~~~~~~~~~~~VLElGcGtGl~sl~la~~g~~V~~tD~~~~~~~l~~~~~n~~~n~~~-~~~~~l-~w~~~~~ 133 (241)
-.||+.+.......+|..|||==||||-+-+.+...|++++|+|++. .|+.-++.|.+.-++. ..+... |..+.
T Consensus 183 P~lAR~mVNLa~v~~G~~vlDPFcGTGgiLiEagl~G~~viG~Did~--~mv~gak~Nl~~y~i~~~~~~~~~Da~~l-- 258 (347)
T COG1041 183 PRLARAMVNLARVKRGELVLDPFCGTGGILIEAGLMGARVIGSDIDE--RMVRGAKINLEYYGIEDYPVLKVLDATNL-- 258 (347)
T ss_pred HHHHHHHHHHhccccCCEeecCcCCccHHHHhhhhcCceEeecchHH--HHHhhhhhhhhhhCcCceeEEEecccccC--
Confidence 46777777666777899999999999999999999999999999996 6999999999988753 222222 33332
Q ss_pred CcCCCCCcEEEEcCCcCCCc----------cHHHHHHHHHHHhhcCCCeEEEEEeeccCchhHHHHHHHHcCCEEEEEec
Q 026274 134 SIFDLNPNIILGADVFYDAS----------AFDDLFATITYLLQSSPGSVFITTYHNRSGHHLIEFLMVKWGLKCVKLVD 203 (241)
Q Consensus 134 ~~~~~~fDlIl~~dvly~~~----------~~~~ll~~~~~lL~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~i~~ 203 (241)
++.+.++|.|+ .|+-|-.. ....+++++++.|+ +||.+.+... +. ........||++.....
T Consensus 259 pl~~~~vdaIa-tDPPYGrst~~~~~~l~~Ly~~~le~~~evLk--~gG~~vf~~p-~~----~~~~~~~~~f~v~~~~~ 330 (347)
T COG1041 259 PLRDNSVDAIA-TDPPYGRSTKIKGEGLDELYEEALESASEVLK--PGGRIVFAAP-RD----PRHELEELGFKVLGRFT 330 (347)
T ss_pred CCCCCccceEE-ecCCCCcccccccccHHHHHHHHHHHHHHHhh--cCcEEEEecC-Cc----chhhHhhcCceEEEEEE
Confidence 34444699987 46666542 37888999999998 4565555544 11 22335678999988755
Q ss_pred CC
Q 026274 204 GF 205 (241)
Q Consensus 204 ~~ 205 (241)
.+
T Consensus 331 ~~ 332 (347)
T COG1041 331 MR 332 (347)
T ss_pred Ee
Confidence 44
|
|
| >PLN02366 spermidine synthase | Back alignment and domain information |
|---|
Probab=98.48 E-value=1.6e-06 Score=76.40 Aligned_cols=102 Identities=13% Similarity=0.068 Sum_probs=69.7
Q ss_pred CCCeEEEecCCCCHHHHHHHHhC--CEEEEEcCCCcHHHHHHHHHHHHH-----cCCceEEEEeecCCCCcCcCCCCCcE
Q 026274 70 SGANVVELGAGTSLPGLVAAKVG--SNVTLTDDSNRIEVLKNMRRVCEM-----NKLNCRVMGLTWGFLDASIFDLNPNI 142 (241)
Q Consensus 70 ~~~~VLElGcGtGl~sl~la~~g--~~V~~tD~~~~~~~l~~~~~n~~~-----n~~~~~~~~l~w~~~~~~~~~~~fDl 142 (241)
+.++||+||||.|.+...+++.. .+|+++|+++ ++++.+++.... ++.++++...|.........+++||+
T Consensus 91 ~pkrVLiIGgG~G~~~rellk~~~v~~V~~VEiD~--~Vi~~ar~~f~~~~~~~~dpRv~vi~~Da~~~l~~~~~~~yDv 168 (308)
T PLN02366 91 NPKKVLVVGGGDGGVLREIARHSSVEQIDICEIDK--MVIDVSKKFFPDLAVGFDDPRVNLHIGDGVEFLKNAPEGTYDA 168 (308)
T ss_pred CCCeEEEEcCCccHHHHHHHhCCCCCeEEEEECCH--HHHHHHHHhhhhhccccCCCceEEEEChHHHHHhhccCCCCCE
Confidence 46899999999999988888873 3899999995 699999887643 23355555555332222222457999
Q ss_pred EEEcCCcCC--Cc---cHHHHHHHHHHHhhcCCCeEEEE
Q 026274 143 ILGADVFYD--AS---AFDDLFATITYLLQSSPGSVFIT 176 (241)
Q Consensus 143 Il~~dvly~--~~---~~~~ll~~~~~lL~~~~~~~~~~ 176 (241)
|+. |..-. +. .-..+++.+++.|+ ++|+++.
T Consensus 169 Ii~-D~~dp~~~~~~L~t~ef~~~~~~~L~--pgGvlv~ 204 (308)
T PLN02366 169 IIV-DSSDPVGPAQELFEKPFFESVARALR--PGGVVCT 204 (308)
T ss_pred EEE-cCCCCCCchhhhhHHHHHHHHHHhcC--CCcEEEE
Confidence 996 33211 11 13467889999998 6777654
|
|
| >PF02475 Met_10: Met-10+ like-protein; InterPro: IPR003402 This entry represents the Trm5 family | Back alignment and domain information |
|---|
Probab=98.47 E-value=6.6e-07 Score=73.99 Aligned_cols=91 Identities=15% Similarity=0.100 Sum_probs=62.3
Q ss_pred CCCCCeEEEecCCCCHHHHHHHH--hCCEEEEEcCCCcHHHHHHHHHHHHHcCCc--eEEEEeecCCCCcCcCCCCCcEE
Q 026274 68 RFSGANVVELGAGTSLPGLVAAK--VGSNVTLTDDSNRIEVLKNMRRVCEMNKLN--CRVMGLTWGFLDASIFDLNPNII 143 (241)
Q Consensus 68 ~~~~~~VLElGcGtGl~sl~la~--~g~~V~~tD~~~~~~~l~~~~~n~~~n~~~--~~~~~l~w~~~~~~~~~~~fDlI 143 (241)
..+|..|+|+.||.|..++.+|+ .+..|++.|++| .+++.+++|++.|++. +.+...|..+... ...+|-|
T Consensus 99 v~~~e~VlD~faGIG~f~l~~ak~~~~~~V~A~d~Np--~a~~~L~~Ni~lNkv~~~i~~~~~D~~~~~~---~~~~drv 173 (200)
T PF02475_consen 99 VKPGEVVLDMFAGIGPFSLPIAKHGKAKRVYAVDLNP--DAVEYLKENIRLNKVENRIEVINGDAREFLP---EGKFDRV 173 (200)
T ss_dssp --TT-EEEETT-TTTTTHHHHHHHT-SSEEEEEES-H--HHHHHHHHHHHHTT-TTTEEEEES-GGG------TT-EEEE
T ss_pred CCcceEEEEccCCccHHHHHHhhhcCccEEEEecCCH--HHHHHHHHHHHHcCCCCeEEEEcCCHHHhcC---ccccCEE
Confidence 34678999999999999999999 566899999995 7999999999999986 4556666554432 5689999
Q ss_pred EEcCCcCCCccHHHHHHHHHHHhh
Q 026274 144 LGADVFYDASAFDDLFATITYLLQ 167 (241)
Q Consensus 144 l~~dvly~~~~~~~ll~~~~~lL~ 167 (241)
++.- +.....++..+..+++
T Consensus 174 im~l----p~~~~~fl~~~~~~~~ 193 (200)
T PF02475_consen 174 IMNL----PESSLEFLDAALSLLK 193 (200)
T ss_dssp EE------TSSGGGGHHHHHHHEE
T ss_pred EECC----hHHHHHHHHHHHHHhc
Confidence 9864 3334456667777776
|
Trm5 specifically methylates the N1 position of guanosine-37 in various tRNAs [, , ]. Another members of this family, tRNA wybutosine-synthesizing protein 2 (Tyw2) and its homologues, are S-adenosyl-L-methionine-dependent transferases that act as a component of the wybutosine biosynthesis pathway [, ]. tRNA wybutosine-synthesizing protein 2 was originally thought to be a methyltransferase [].; GO: 0016740 transferase activity; PDB: 3A27_A 2ZZN_B 2YX1_A 2ZZM_A 3AY0_B 3K6R_A 3A26_A 3A25_A. |
| >PF05219 DREV: DREV methyltransferase; InterPro: IPR007884 This family contains DREV protein homologues from several eukaryotes | Back alignment and domain information |
|---|
Probab=98.46 E-value=3.1e-06 Score=71.94 Aligned_cols=94 Identities=17% Similarity=0.147 Sum_probs=71.7
Q ss_pred CCCeEEEecCCCCHHHHHHHHhCCEEEEEcCCCcHHHHHHHHHHHHHcCCceEEEEeecCCCCcCcCCCCCcEEEEcCCc
Q 026274 70 SGANVVELGAGTSLPGLVAAKVGSNVTLTDDSNRIEVLKNMRRVCEMNKLNCRVMGLTWGFLDASIFDLNPNIILGADVF 149 (241)
Q Consensus 70 ~~~~VLElGcGtGl~sl~la~~g~~V~~tD~~~~~~~l~~~~~n~~~n~~~~~~~~l~w~~~~~~~~~~~fDlIl~~dvl 149 (241)
+..++||||||.|-+...++..-.+|.+|+.|. .|...++ ..|.++ +-..+|.+. +.+||+|.|..++
T Consensus 94 ~~~~lLDlGAGdG~VT~~l~~~f~~v~aTE~S~--~Mr~rL~----~kg~~v-l~~~~w~~~-----~~~fDvIscLNvL 161 (265)
T PF05219_consen 94 KDKSLLDLGAGDGEVTERLAPLFKEVYATEASP--PMRWRLS----KKGFTV-LDIDDWQQT-----DFKFDVISCLNVL 161 (265)
T ss_pred cCCceEEecCCCcHHHHHHHhhcceEEeecCCH--HHHHHHH----hCCCeE-Eehhhhhcc-----CCceEEEeehhhh
Confidence 567899999999999999999888999999995 3544333 345443 223456532 3579999999999
Q ss_pred CCCccHHHHHHHHHHHhhcCCCeEEEEE
Q 026274 150 YDASAFDDLFATITYLLQSSPGSVFITT 177 (241)
Q Consensus 150 y~~~~~~~ll~~~~~lL~~~~~~~~~~~ 177 (241)
=....+..|++.+++.|+| +|.++++
T Consensus 162 DRc~~P~~LL~~i~~~l~p--~G~lilA 187 (265)
T PF05219_consen 162 DRCDRPLTLLRDIRRALKP--NGRLILA 187 (265)
T ss_pred hccCCHHHHHHHHHHHhCC--CCEEEEE
Confidence 8888999999999999985 5554443
|
The function of this protein is unknown []. However, these proteins appear to be related to other methyltransferases. |
| >PF05185 PRMT5: PRMT5 arginine-N-methyltransferase; InterPro: IPR007857 The human homologue of Saccharomyces cerevisiae Skb1 (Shk1 kinase-binding protein 1) is a protein methyltransferase [] | Back alignment and domain information |
|---|
Probab=98.46 E-value=1.6e-06 Score=80.04 Aligned_cols=98 Identities=14% Similarity=0.246 Sum_probs=66.6
Q ss_pred CCCeEEEecCCCCHHHHHHHHhC-----C-EEEEEcCCCcHHHHHHHHHHHHHcCC--ceEEEEeecCCCCcCcCCCCCc
Q 026274 70 SGANVVELGAGTSLPGLVAAKVG-----S-NVTLTDDSNRIEVLKNMRRVCEMNKL--NCRVMGLTWGFLDASIFDLNPN 141 (241)
Q Consensus 70 ~~~~VLElGcGtGl~sl~la~~g-----~-~V~~tD~~~~~~~l~~~~~n~~~n~~--~~~~~~l~w~~~~~~~~~~~fD 141 (241)
+++.|+|+|||+|.++.++++.| + +|.+++.++ .+...+++.+..|+. .+++...+..+... +.++|
T Consensus 186 ~~~vVldVGAGrGpL~~~al~A~~~~~~a~~VyAVEkn~--~A~~~l~~~v~~n~w~~~V~vi~~d~r~v~l---pekvD 260 (448)
T PF05185_consen 186 KDKVVLDVGAGRGPLSMFALQAGARAGGAVKVYAVEKNP--NAVVTLQKRVNANGWGDKVTVIHGDMREVEL---PEKVD 260 (448)
T ss_dssp TT-EEEEES-TTSHHHHHHHHTTHHHCCESEEEEEESST--HHHHHHHHHHHHTTTTTTEEEEES-TTTSCH---SS-EE
T ss_pred cceEEEEeCCCccHHHHHHHHHHHHhCCCeEEEEEcCCH--hHHHHHHHHHHhcCCCCeEEEEeCcccCCCC---CCcee
Confidence 57889999999999999988876 3 899999997 366666666677765 57778777766543 34899
Q ss_pred EEEEcCCc---CCCccHHHHHHHHHHHhhcCCCeEEE
Q 026274 142 IILGADVF---YDASAFDDLFATITYLLQSSPGSVFI 175 (241)
Q Consensus 142 lIl~~dvl---y~~~~~~~ll~~~~~lL~~~~~~~~~ 175 (241)
+||+ +.+ -.-+.....+....+.|++ +|+++
T Consensus 261 IIVS-ElLGsfg~nEl~pE~Lda~~rfLkp--~Gi~I 294 (448)
T PF05185_consen 261 IIVS-ELLGSFGDNELSPECLDAADRFLKP--DGIMI 294 (448)
T ss_dssp EEEE----BTTBTTTSHHHHHHHGGGGEEE--EEEEE
T ss_pred EEEE-eccCCccccccCHHHHHHHHhhcCC--CCEEe
Confidence 9983 333 1223555678888899984 45444
|
These proteins seem to play a role in Jak signalling.; GO: 0008168 methyltransferase activity, 0005737 cytoplasm; PDB: 2Y1W_C 2Y1X_D 2V7E_B 2V74_H 3R0Q_G 3B3F_B 3B3J_A 3B3G_A 3UA3_A 3UA4_B .... |
| >PLN02589 caffeoyl-CoA O-methyltransferase | Back alignment and domain information |
|---|
Probab=98.46 E-value=8.8e-07 Score=75.59 Aligned_cols=103 Identities=14% Similarity=0.041 Sum_probs=75.1
Q ss_pred CCCCCeEEEecCCCCHHHHHHHHh---CCEEEEEcCCCcHHHHHHHHHHHHHcCCc--eEEEEeecCCCCcCcC-----C
Q 026274 68 RFSGANVVELGAGTSLPGLVAAKV---GSNVTLTDDSNRIEVLKNMRRVCEMNKLN--CRVMGLTWGFLDASIF-----D 137 (241)
Q Consensus 68 ~~~~~~VLElGcGtGl~sl~la~~---g~~V~~tD~~~~~~~l~~~~~n~~~n~~~--~~~~~l~w~~~~~~~~-----~ 137 (241)
..+.++|||||+++|.-++.+|+. +.+|+.+|.++ +..+.++.+++..+.. +++...+..+....+. .
T Consensus 77 ~~~ak~iLEiGT~~GySal~la~al~~~g~v~tiE~~~--~~~~~Ar~~~~~ag~~~~I~~~~G~a~e~L~~l~~~~~~~ 154 (247)
T PLN02589 77 LINAKNTMEIGVYTGYSLLATALALPEDGKILAMDINR--ENYELGLPVIQKAGVAHKIDFREGPALPVLDQMIEDGKYH 154 (247)
T ss_pred HhCCCEEEEEeChhhHHHHHHHhhCCCCCEEEEEeCCH--HHHHHHHHHHHHCCCCCceEEEeccHHHHHHHHHhccccC
Confidence 345679999999999999999874 45899999995 6889999999988863 5555544433222211 2
Q ss_pred CCCcEEEEcCCcCCCccHHHHHHHHHHHhhcCCCeEEEEE
Q 026274 138 LNPNIILGADVFYDASAFDDLFATITYLLQSSPGSVFITT 177 (241)
Q Consensus 138 ~~fDlIl~~dvly~~~~~~~ll~~~~~lL~~~~~~~~~~~ 177 (241)
++||+|+.- .+.......++.+.++|+ +||++++.
T Consensus 155 ~~fD~iFiD---adK~~Y~~y~~~~l~ll~--~GGviv~D 189 (247)
T PLN02589 155 GTFDFIFVD---ADKDNYINYHKRLIDLVK--VGGVIGYD 189 (247)
T ss_pred CcccEEEec---CCHHHhHHHHHHHHHhcC--CCeEEEEc
Confidence 589999853 224456677777788987 78887766
|
|
| >COG0357 GidB Predicted S-adenosylmethionine-dependent methyltransferase involved in bacterial cell division [Cell envelope biogenesis, outer membrane] | Back alignment and domain information |
|---|
Probab=98.45 E-value=4.8e-06 Score=69.44 Aligned_cols=122 Identities=16% Similarity=0.183 Sum_probs=82.7
Q ss_pred CCeEEEecCCCCHHHHHHHHhC--CEEEEEcCCCcHHHHHHHHHHHHHcCCc-eEEEEeecCCCCcCcCCCC-CcEEEEc
Q 026274 71 GANVVELGAGTSLPGLVAAKVG--SNVTLTDDSNRIEVLKNMRRVCEMNKLN-CRVMGLTWGFLDASIFDLN-PNIILGA 146 (241)
Q Consensus 71 ~~~VLElGcGtGl~sl~la~~g--~~V~~tD~~~~~~~l~~~~~n~~~n~~~-~~~~~l~w~~~~~~~~~~~-fDlIl~~ 146 (241)
+++++|||+|.|++|+.+|-.. .+|+..|-... =+..++.-...-+++ +++.....++.... .+ ||+|.+-
T Consensus 68 ~~~~~DIGSGaGfPGipLAI~~p~~~vtLles~~K--k~~FL~~~~~eL~L~nv~i~~~RaE~~~~~---~~~~D~vtsR 142 (215)
T COG0357 68 AKRVLDIGSGAGFPGIPLAIAFPDLKVTLLESLGK--KIAFLREVKKELGLENVEIVHGRAEEFGQE---KKQYDVVTSR 142 (215)
T ss_pred CCEEEEeCCCCCCchhhHHHhccCCcEEEEccCch--HHHHHHHHHHHhCCCCeEEehhhHhhcccc---cccCcEEEee
Confidence 6899999999999999999653 37999999863 444555554444544 66666555543221 13 9999873
Q ss_pred CCcCCCccHHHHHHHHHHHhhcCCCeEEEEEeeccCchhHHHHHHHHcCCEEEEE
Q 026274 147 DVFYDASAFDDLFATITYLLQSSPGSVFITTYHNRSGHHLIEFLMVKWGLKCVKL 201 (241)
Q Consensus 147 dvly~~~~~~~ll~~~~~lL~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~i 201 (241)
-...+..+.+.+..+++.+++.+++.....+.-....+..+..+|+.+..+
T Consensus 143 ----Ava~L~~l~e~~~pllk~~g~~~~~k~~~~~~e~~e~~~a~~~~~~~~~~~ 193 (215)
T COG0357 143 ----AVASLNVLLELCLPLLKVGGGFLAYKGLAGKDELPEAEKAILPLGGQVEKV 193 (215)
T ss_pred ----hccchHHHHHHHHHhcccCCcchhhhHHhhhhhHHHHHHHHHhhcCcEEEE
Confidence 456888999999999985444444444444433444555667888887776
|
|
| >PF01170 UPF0020: Putative RNA methylase family UPF0020; InterPro: IPR000241 This domain is probably a methylase | Back alignment and domain information |
|---|
Probab=98.44 E-value=2e-06 Score=70.00 Aligned_cols=134 Identities=19% Similarity=0.190 Sum_probs=83.3
Q ss_pred HHHHHHHhccCCCCCCeEEEecCCCCHHHHHHHHhCC--E---------EEEEcCCCcHHHHHHHHHHHHHcCCc--eEE
Q 026274 57 ILAEYVWQQRYRFSGANVVELGAGTSLPGLVAAKVGS--N---------VTLTDDSNRIEVLKNMRRVCEMNKLN--CRV 123 (241)
Q Consensus 57 ~L~~~l~~~~~~~~~~~VLElGcGtGl~sl~la~~g~--~---------V~~tD~~~~~~~l~~~~~n~~~n~~~--~~~ 123 (241)
.+|.-|.......++..|||--||+|.+-+.++..+. . +++.|+++ ++++.+++|++..+.. +.+
T Consensus 15 ~lA~~ll~la~~~~~~~vlDP~CGsGtiliEaa~~~~~~~~~~~~~~~~~~g~Di~~--~~v~~a~~N~~~ag~~~~i~~ 92 (179)
T PF01170_consen 15 TLAAALLNLAGWRPGDVVLDPFCGSGTILIEAALMGANIPPLNDINELKIIGSDIDP--KAVRGARENLKAAGVEDYIDF 92 (179)
T ss_dssp HHHHHHHHHTT--TTS-EEETT-TTSHHHHHHHHHHTTTSTTTH-CH--EEEEESSH--HHHHHHHHHHHHTT-CGGEEE
T ss_pred HHHHHHHHHhCCCCCCEEeecCCCCCHHHHHHHHHhhCcccccccccccEEecCCCH--HHHHHHHHHHHhcccCCceEE
Confidence 3444444444445678999999999999999888754 3 67999995 7999999999988774 455
Q ss_pred EEeecCCCCcCcCCCCCcEEEEcCCcCCC--------ccHHHHHHHHHHHhhcCCCeEEEEEeeccCchhHHHHHHHHcC
Q 026274 124 MGLTWGFLDASIFDLNPNIILGADVFYDA--------SAFDDLFATITYLLQSSPGSVFITTYHNRSGHHLIEFLMVKWG 195 (241)
Q Consensus 124 ~~l~w~~~~~~~~~~~fDlIl~~dvly~~--------~~~~~ll~~~~~lL~~~~~~~~~~~~~~r~~~~~~~~~~~~~g 195 (241)
...|..+. +..++++|+|+++.++-.. ..+..+++.+.++++ +..+++++ ..+. +.......+
T Consensus 93 ~~~D~~~l--~~~~~~~d~IvtnPPyG~r~~~~~~~~~ly~~~~~~~~~~l~--~~~v~l~~-~~~~----~~~~~~~~~ 163 (179)
T PF01170_consen 93 IQWDAREL--PLPDGSVDAIVTNPPYGRRLGSKKDLEKLYRQFLRELKRVLK--PRAVFLTT-SNRE----LEKALGLKG 163 (179)
T ss_dssp EE--GGGG--GGTTSBSCEEEEE--STTSHCHHHHHHHHHHHHHHHHHCHST--TCEEEEEE-SCCC----HHHHHTSTT
T ss_pred Eecchhhc--ccccCCCCEEEECcchhhhccCHHHHHHHHHHHHHHHHHHCC--CCEEEEEE-CCHH----HHHHhcchh
Confidence 55555443 3345689999988777553 234455666777776 45555554 3222 344444557
Q ss_pred CEEEEE
Q 026274 196 LKCVKL 201 (241)
Q Consensus 196 ~~~~~i 201 (241)
+...+.
T Consensus 164 ~~~~~~ 169 (179)
T PF01170_consen 164 WRKRKL 169 (179)
T ss_dssp SEEEEE
T ss_pred hceEEE
Confidence 766655
|
It is associated with the THUMP domain that also occurs with RNA modification domains [].; PDB: 3LDU_A 3LDG_A 3K0B_A 3V8V_B 3V97_A 3TLJ_A 3TM5_B 3TM4_A 3TMA_A. |
| >KOG2361 consensus Predicted methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.39 E-value=9.4e-07 Score=74.05 Aligned_cols=107 Identities=14% Similarity=0.142 Sum_probs=75.4
Q ss_pred eEEEecCCCCHHHHHHHHhC----CEEEEEcCCCcHHHHHHHHHHHHHcCCceEEEEeecCCC--CcCcCCCCCcEEEEc
Q 026274 73 NVVELGAGTSLPGLVAAKVG----SNVTLTDDSNRIEVLKNMRRVCEMNKLNCRVMGLTWGFL--DASIFDLNPNIILGA 146 (241)
Q Consensus 73 ~VLElGcGtGl~sl~la~~g----~~V~~tD~~~~~~~l~~~~~n~~~n~~~~~~~~l~w~~~--~~~~~~~~fDlIl~~ 146 (241)
+|||+|||.|-...-+.+-. -+|.+.|.++ .+++.+++|...+...+..-..|.... ..+...+++|+|.+-
T Consensus 74 ~ilEvGCGvGNtvfPll~~~~n~~l~v~acDfsp--~Ai~~vk~~~~~~e~~~~afv~Dlt~~~~~~~~~~~svD~it~I 151 (264)
T KOG2361|consen 74 TILEVGCGVGNTVFPLLKTSPNNRLKVYACDFSP--RAIELVKKSSGYDESRVEAFVWDLTSPSLKEPPEEGSVDIITLI 151 (264)
T ss_pred hheeeccCCCcccchhhhcCCCCCeEEEEcCCCh--HHHHHHHhccccchhhhcccceeccchhccCCCCcCccceEEEE
Confidence 69999999997777766643 3799999996 599999988766554443322332222 234445689998776
Q ss_pred CCcC--CCccHHHHHHHHHHHhhcCCCeEEEEEeeccCc
Q 026274 147 DVFY--DASAFDDLFATITYLLQSSPGSVFITTYHNRSG 183 (241)
Q Consensus 147 dvly--~~~~~~~ll~~~~~lL~~~~~~~~~~~~~~r~~ 183 (241)
=|+- +++.....++.+.++|| |||.+++....++.
T Consensus 152 FvLSAi~pek~~~a~~nl~~llK--PGG~llfrDYg~~D 188 (264)
T KOG2361|consen 152 FVLSAIHPEKMQSVIKNLRTLLK--PGGSLLFRDYGRYD 188 (264)
T ss_pred EEEeccChHHHHHHHHHHHHHhC--CCcEEEEeecccch
Confidence 5553 46788999999999998 67777766444433
|
|
| >PF09445 Methyltransf_15: RNA cap guanine-N2 methyltransferase; InterPro: IPR019012 RNA cap guanine-N2 methyltransferases such as Schizosaccharomyces pombe (Fission yeast) trimethylguanosine synthase (Tgs1) and Giardia lamblia (Giardia intestinalis) Tgs2, catalyse the methylation step(s) for the conversion of the 7-monomethylguanosine (m(7)G) caps of snRNAs and snoRNAs to a 2,2,7-trimethylguanosine (m(2,2,7)G) cap structure [, , ] | Back alignment and domain information |
|---|
Probab=98.27 E-value=2.5e-06 Score=68.22 Aligned_cols=100 Identities=15% Similarity=0.118 Sum_probs=64.8
Q ss_pred eEEEecCCCCHHHHHHHHhCCEEEEEcCCCcHHHHHHHHHHHHHcCC--ceEEEEeecCCCCcCcCCCC-CcEEEEcCCc
Q 026274 73 NVVELGAGTSLPGLVAAKVGSNVTLTDDSNRIEVLKNMRRVCEMNKL--NCRVMGLTWGFLDASIFDLN-PNIILGADVF 149 (241)
Q Consensus 73 ~VLElGcGtGl~sl~la~~g~~V~~tD~~~~~~~l~~~~~n~~~n~~--~~~~~~l~w~~~~~~~~~~~-fDlIl~~dvl 149 (241)
.|+|+.||.|--++.+|+.+.+|+++|+++ ..++.++.|++.-|+ ++.+...||.+......... +|+|+++++.
T Consensus 2 ~vlD~fcG~GGNtIqFA~~~~~Viaidid~--~~~~~a~hNa~vYGv~~~I~~i~gD~~~~~~~~~~~~~~D~vFlSPPW 79 (163)
T PF09445_consen 2 TVLDAFCGVGGNTIQFARTFDRVIAIDIDP--ERLECAKHNAEVYGVADNIDFICGDFFELLKRLKSNKIFDVVFLSPPW 79 (163)
T ss_dssp EEEETT-TTSHHHHHHHHTT-EEEEEES-H--HHHHHHHHHHHHTT-GGGEEEEES-HHHHGGGB------SEEEE---B
T ss_pred EEEEeccCcCHHHHHHHHhCCeEEEEECCH--HHHHHHHHHHHHcCCCCcEEEEeCCHHHHHhhccccccccEEEECCCC
Confidence 699999999999999999999999999995 799999999999986 57888888887543322222 8999988754
Q ss_pred C----------CC------ccHHHHHHHHHHHhhcCCCeEEEEE
Q 026274 150 Y----------DA------SAFDDLFATITYLLQSSPGSVFITT 177 (241)
Q Consensus 150 y----------~~------~~~~~ll~~~~~lL~~~~~~~~~~~ 177 (241)
= .. -+...+++...++ .+..+++++
T Consensus 80 GGp~Y~~~~~fdL~~~~~p~~~~~l~~~~~~~---t~nv~l~LP 120 (163)
T PF09445_consen 80 GGPSYSKKDVFDLEKSMQPFNLEDLLKAARKI---TPNVVLFLP 120 (163)
T ss_dssp SSGGGGGSSSB-TTTSSSS--HHHHHHHHHHH----S-EEEEEE
T ss_pred CCccccccCccCHHHccCCCCHHHHHHHHHhh---CCCEEEEeC
Confidence 2 22 1355555555555 355555554
|
Trimethylguanosine synthase is specific for guanine, and N7 methylation must precede N2 methylation. This enzyme is required for pre-mRNA splicing, pre-rRNA processing and small ribosomal subunit synthesis. As such, this enzyme plays a role in transcriptional regulation. ; GO: 0008168 methyltransferase activity, 0001510 RNA methylation, 0009452 RNA capping; PDB: 3EGI_B 3GDH_A. |
| >PF06080 DUF938: Protein of unknown function (DUF938); InterPro: IPR010342 This family consists of several hypothetical proteins from both prokaryotes and eukaryotes | Back alignment and domain information |
|---|
Probab=98.27 E-value=6.7e-06 Score=67.87 Aligned_cols=94 Identities=18% Similarity=0.153 Sum_probs=68.4
Q ss_pred eEEEecCCCCHHHHHHHHhCC--EEEEEcCCCcHHHHHHHHHHHHHcCCc-e-EEEEeecCCCCcCc------CCCCCcE
Q 026274 73 NVVELGAGTSLPGLVAAKVGS--NVTLTDDSNRIEVLKNMRRVCEMNKLN-C-RVMGLTWGFLDASI------FDLNPNI 142 (241)
Q Consensus 73 ~VLElGcGtGl~sl~la~~g~--~V~~tD~~~~~~~l~~~~~n~~~n~~~-~-~~~~l~w~~~~~~~------~~~~fDl 142 (241)
+|||||||||.=+.++|+.-. ...-+|.++ ..+..++..+...+.. + ....+|......+. ...+||.
T Consensus 28 ~vLEiaSGtGqHa~~FA~~lP~l~WqPSD~~~--~~~~sI~a~~~~~~~~Nv~~P~~lDv~~~~w~~~~~~~~~~~~~D~ 105 (204)
T PF06080_consen 28 RVLEIASGTGQHAVYFAQALPHLTWQPSDPDD--NLRPSIRAWIAEAGLPNVRPPLALDVSAPPWPWELPAPLSPESFDA 105 (204)
T ss_pred eEEEEcCCccHHHHHHHHHCCCCEEcCCCCCh--HHHhhHHHHHHhcCCcccCCCeEeecCCCCCccccccccCCCCcce
Confidence 699999999999999998743 778899996 4667777766655432 1 12344444332222 2458999
Q ss_pred EEEcCCcCCC--ccHHHHHHHHHHHhhc
Q 026274 143 ILGADVFYDA--SAFDDLFATITYLLQS 168 (241)
Q Consensus 143 Il~~dvly~~--~~~~~ll~~~~~lL~~ 168 (241)
|++..+++-. ...+.|++...++|++
T Consensus 106 i~~~N~lHI~p~~~~~~lf~~a~~~L~~ 133 (204)
T PF06080_consen 106 IFCINMLHISPWSAVEGLFAGAARLLKP 133 (204)
T ss_pred eeehhHHHhcCHHHHHHHHHHHHHhCCC
Confidence 9999999875 5788999999999984
|
The function of this family is unknown. |
| >COG2520 Predicted methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.22 E-value=2.4e-05 Score=69.54 Aligned_cols=123 Identities=17% Similarity=0.156 Sum_probs=81.8
Q ss_pred CCCeEEEecCCCCHHHHHHHHhCC-EEEEEcCCCcHHHHHHHHHHHHHcCCceE--EEEeecCCCCcCcCCCCCcEEEEc
Q 026274 70 SGANVVELGAGTSLPGLVAAKVGS-NVTLTDDSNRIEVLKNMRRVCEMNKLNCR--VMGLTWGFLDASIFDLNPNIILGA 146 (241)
Q Consensus 70 ~~~~VLElGcGtGl~sl~la~~g~-~V~~tD~~~~~~~l~~~~~n~~~n~~~~~--~~~l~w~~~~~~~~~~~fDlIl~~ 146 (241)
.|.+|||+=||.|-+++.+|+.|+ +|+++|+|| .+++.+++|+++|+.... ....|-.+..... ..+|-|++.
T Consensus 188 ~GE~V~DmFAGVGpfsi~~Ak~g~~~V~A~diNP--~A~~~L~eNi~LN~v~~~v~~i~gD~rev~~~~--~~aDrIim~ 263 (341)
T COG2520 188 EGETVLDMFAGVGPFSIPIAKKGRPKVYAIDINP--DAVEYLKENIRLNKVEGRVEPILGDAREVAPEL--GVADRIIMG 263 (341)
T ss_pred CCCEEEEccCCcccchhhhhhcCCceEEEEecCH--HHHHHHHHHHHhcCccceeeEEeccHHHhhhcc--ccCCEEEeC
Confidence 588999999999999999999998 499999995 799999999999998654 4444444332221 579999986
Q ss_pred CCcCCCccHHHHHHHHHHHhhcCCCeEEEEEe-eccC----chhHHHHHHHHcCCEEEEE
Q 026274 147 DVFYDASAFDDLFATITYLLQSSPGSVFITTY-HNRS----GHHLIEFLMVKWGLKCVKL 201 (241)
Q Consensus 147 dvly~~~~~~~ll~~~~~lL~~~~~~~~~~~~-~~r~----~~~~~~~~~~~~g~~~~~i 201 (241)
- +.....++.....+++. ++.+-+-.. +... ....+...+.+.|.++...
T Consensus 264 ~----p~~a~~fl~~A~~~~k~-~g~iHyy~~~~e~~~~~~~~~~i~~~~~~~~~~~~v~ 318 (341)
T COG2520 264 L----PKSAHEFLPLALELLKD-GGIIHYYEFVPEDDIEERPEKRIKSAARKGGYKVEVL 318 (341)
T ss_pred C----CCcchhhHHHHHHHhhc-CcEEEEEeccchhhcccchHHHHHHHHhhccCcceEE
Confidence 3 33445566666667763 232222221 1111 1233444566677655544
|
|
| >PF01739 CheR: CheR methyltransferase, SAM binding domain; InterPro: IPR022642 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals | Back alignment and domain information |
|---|
Probab=98.17 E-value=3.1e-06 Score=69.87 Aligned_cols=104 Identities=13% Similarity=0.072 Sum_probs=64.6
Q ss_pred CCCeEEEecCCCC--H--HHHHHHHh-----C--CEEEEEcCCCcHHHHHHHHHHH----HHcC----------------
Q 026274 70 SGANVVELGAGTS--L--PGLVAAKV-----G--SNVTLTDDSNRIEVLKNMRRVC----EMNK---------------- 118 (241)
Q Consensus 70 ~~~~VLElGcGtG--l--~sl~la~~-----g--~~V~~tD~~~~~~~l~~~~~n~----~~n~---------------- 118 (241)
+..+|+-.||+|| . +++.+... + .+|++||+|+ .+|+.|++-+ ...+
T Consensus 31 ~~lrIWSagCStGeE~YSlAmll~e~~~~~~~~~~~I~atDi~~--~~L~~Ar~G~Y~~~~~~~~~~~~~~ryf~~~~~~ 108 (196)
T PF01739_consen 31 RPLRIWSAGCSTGEEPYSLAMLLLELLPGALGWDFRILATDISP--SALEKARAGIYPERSLRGLPPAYLRRYFTERDGG 108 (196)
T ss_dssp S-EEEEETT-TTTHHHHHHHHHHHHHH-S-TT-SEEEEEEES-H--HHHHHHHHTEEEGGGGTTS-HHHHHHHEEEE-CC
T ss_pred CCeEEEECCCCCChhHHHHHHHHHHHhcccCCCceEEEEEECCH--HHHHHHHhCCCCHHHHhhhHHHHHHHhccccCCC
Confidence 4468999999999 3 34444441 2 2899999995 6898887521 0001
Q ss_pred ---------CceEEEEeecCCCCcCcCCCCCcEEEEcCCcCC--CccHHHHHHHHHHHhhcCCCeEEEEEee
Q 026274 119 ---------LNCRVMGLTWGFLDASIFDLNPNIILGADVFYD--ASAFDDLFATITYLLQSSPGSVFITTYH 179 (241)
Q Consensus 119 ---------~~~~~~~l~w~~~~~~~~~~~fDlIl~~dvly~--~~~~~~ll~~~~~lL~~~~~~~~~~~~~ 179 (241)
..++|...+..+. ......||+|+|-+|+.| .+....+++.+.+.|+ |||.+++++.
T Consensus 109 ~~~v~~~lr~~V~F~~~NL~~~--~~~~~~fD~I~CRNVlIYF~~~~~~~vl~~l~~~L~--pgG~L~lG~s 176 (196)
T PF01739_consen 109 GYRVKPELRKMVRFRRHNLLDP--DPPFGRFDLIFCRNVLIYFDPETQQRVLRRLHRSLK--PGGYLFLGHS 176 (196)
T ss_dssp CTTE-HHHHTTEEEEE--TT-S--------EEEEEE-SSGGGS-HHHHHHHHHHHGGGEE--EEEEEEE-TT
T ss_pred ceeEChHHcCceEEEecccCCC--CcccCCccEEEecCEEEEeCHHHHHHHHHHHHHHcC--CCCEEEEecC
Confidence 1367777766651 223458999999999954 5677899999999998 7899998854
|
The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. Flagellated bacteria swim towards favourable chemicals and away from deleterious ones. Sensing of chemoeffector gradients involves chemotaxis receptors, transmembrane (TM) proteins that detect stimuli through their periplasmic domains and transduce the signals via their cytoplasmic domains []. Signalling outputs from these receptors are influenced both by the binding of the chemoeffector ligand to their periplasmic domains and by methylation of specific glutamate residues on their cytoplasmic domains. Methylation is catalysed by CheR, an S-adenosylmethionine-dependent methyltransferase [], which reversibly methylates specific glutamate residues within a coiled coil region, to form gamma-glutamyl methyl ester residues [, ]. The structure of the Salmonella typhimurium chemotaxis receptor methyltransferase CheR, bound to S-adenosylhomocysteine, has been determined to a resolution of 2.0 A []. The structure reveals CheR to be a two-domain protein, with a smaller N-terminal helical domain linked via a single polypeptide connection to a larger C-terminal alpha/beta domain. The C-terminal domain has the characteristics of a nucleotide-binding fold, with an insertion of a small anti-parallel beta-sheet subdomain. The S-adenosylhomocysteine-binding site is formed mainly by the large domain, with contributions from residues within the N-terminal domain and the linker region []. CheR proteins are part of the chemotaxis signaling mechanism which methylates the chemotaxis receptor at specific glutamate residues. This entry refers to the C-terminal SAM-binding domain of the CherR-type MCP methyltransferases, which are found in bacteria, archaea and green plants. This entry is found in association with PF03705 from PFAM. ; PDB: 1AF7_A 1BC5_A. |
| >COG2521 Predicted archaeal methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.16 E-value=7.2e-06 Score=68.56 Aligned_cols=132 Identities=11% Similarity=0.058 Sum_probs=90.2
Q ss_pred CCCCCeEEEecCCCCHHHHHHHHhCC-EEEEEcCCCcHHHHHHHHHHHHHcCC---ceEEEEeecCCCCcCcCCCCCcEE
Q 026274 68 RFSGANVVELGAGTSLPGLVAAKVGS-NVTLTDDSNRIEVLKNMRRVCEMNKL---NCRVMGLTWGFLDASIFDLNPNII 143 (241)
Q Consensus 68 ~~~~~~VLElGcGtGl~sl~la~~g~-~V~~tD~~~~~~~l~~~~~n~~~n~~---~~~~~~l~w~~~~~~~~~~~fDlI 143 (241)
..+|.+|||-..|.|..++.+.+.|| +|+-++.+++ +|+.+.-|-=..++ .+++...|.-+.-....+.+||+|
T Consensus 132 ~~~G~rVLDtC~GLGYtAi~a~~rGA~~VitvEkdp~--VLeLa~lNPwSr~l~~~~i~iilGD~~e~V~~~~D~sfDaI 209 (287)
T COG2521 132 VKRGERVLDTCTGLGYTAIEALERGAIHVITVEKDPN--VLELAKLNPWSRELFEIAIKIILGDAYEVVKDFDDESFDAI 209 (287)
T ss_pred cccCCEeeeeccCccHHHHHHHHcCCcEEEEEeeCCC--eEEeeccCCCCccccccccEEecccHHHHHhcCCccccceE
Confidence 34789999999999999999999999 9999999974 88877765322222 344444444333345556789999
Q ss_pred EEcCCcCCCc---cHHHHHHHHHHHhhcCCCeEEEEEeec-----cCchhHHHHHHHHcCCEEEEE
Q 026274 144 LGADVFYDAS---AFDDLFATITYLLQSSPGSVFITTYHN-----RSGHHLIEFLMVKWGLKCVKL 201 (241)
Q Consensus 144 l~~dvly~~~---~~~~ll~~~~~lL~~~~~~~~~~~~~~-----r~~~~~~~~~~~~~g~~~~~i 201 (241)
+--++-|... .-+.+.+.+.++|+++++..-|++.+. +....-+...+.+.||..+..
T Consensus 210 iHDPPRfS~AgeLYseefY~El~RiLkrgGrlFHYvG~Pg~ryrG~d~~~gVa~RLr~vGF~~v~~ 275 (287)
T COG2521 210 IHDPPRFSLAGELYSEEFYRELYRILKRGGRLFHYVGNPGKRYRGLDLPKGVAERLRRVGFEVVKK 275 (287)
T ss_pred eeCCCccchhhhHhHHHHHHHHHHHcCcCCcEEEEeCCCCcccccCChhHHHHHHHHhcCceeeee
Confidence 9655555432 356788999999997655555665332 222333344568899996554
|
|
| >PF03291 Pox_MCEL: mRNA capping enzyme; InterPro: IPR004971 This is a family of viral mRNA capping enzymes | Back alignment and domain information |
|---|
Probab=98.15 E-value=1.8e-05 Score=70.43 Aligned_cols=126 Identities=16% Similarity=0.156 Sum_probs=79.6
Q ss_pred EeccHHHHHHHHHhccCCCCCCeEEEecCCCC-HHHHHHHHhCCEEEEEcCCCcHHHHHHHHHHHHH-c------CC---
Q 026274 51 VWPCSVILAEYVWQQRYRFSGANVVELGAGTS-LPGLVAAKVGSNVTLTDDSNRIEVLKNMRRVCEM-N------KL--- 119 (241)
Q Consensus 51 ~W~~s~~L~~~l~~~~~~~~~~~VLElGcGtG-l~sl~la~~g~~V~~tD~~~~~~~l~~~~~n~~~-n------~~--- 119 (241)
-|=-+.++..|+.......++.+|||||||-| =+.-.....-..++++|++. +.++.+++.... + ..
T Consensus 43 NwvKs~LI~~~~~~~~~~~~~~~VLDl~CGkGGDL~Kw~~~~i~~~vg~Dis~--~si~ea~~Ry~~~~~~~~~~~~~~~ 120 (331)
T PF03291_consen 43 NWVKSVLIQKYAKKVKQNRPGLTVLDLCCGKGGDLQKWQKAKIKHYVGIDISE--ESIEEARERYKQLKKRNNSKQYRFD 120 (331)
T ss_dssp HHHHHHHHHHHCHCCCCTTTT-EEEEET-TTTTTHHHHHHTT-SEEEEEES-H--HHHHHHHHHHHHHHTSTT-HTSEEC
T ss_pred HHHHHHHHHHHHHhhhccCCCCeEEEecCCCchhHHHHHhcCCCEEEEEeCCH--HHHHHHHHHHHHhcccccccccccc
Confidence 48889999998875544447889999999966 34444444344899999995 688888876621 1 11
Q ss_pred -ceEEEEeecCCCC--cCcCC--CCCcEEEEcCCcCCC----ccHHHHHHHHHHHhhcCCCeEEEEEeec
Q 026274 120 -NCRVMGLTWGFLD--ASIFD--LNPNIILGADVFYDA----SAFDDLFATITYLLQSSPGSVFITTYHN 180 (241)
Q Consensus 120 -~~~~~~l~w~~~~--~~~~~--~~fDlIl~~dvly~~----~~~~~ll~~~~~lL~~~~~~~~~~~~~~ 180 (241)
...+...|-.... ....+ .+||+|=+--.++|. +....+++.+..+|+ |||.|+.+...
T Consensus 121 f~a~f~~~D~f~~~l~~~~~~~~~~FDvVScQFalHY~Fese~~ar~~l~Nvs~~Lk--~GG~FIgT~~d 188 (331)
T PF03291_consen 121 FIAEFIAADCFSESLREKLPPRSRKFDVVSCQFALHYAFESEEKARQFLKNVSSLLK--PGGYFIGTTPD 188 (331)
T ss_dssp CEEEEEESTTCCSHHHCTSSSTTS-EEEEEEES-GGGGGSSHHHHHHHHHHHHHTEE--EEEEEEEEEE-
T ss_pred chhheeccccccchhhhhccccCCCcceeehHHHHHHhcCCHHHHHHHHHHHHHhcC--CCCEEEEEecC
Confidence 2223332211110 11122 489999988888773 567789999999998 78888877554
|
The enzyme catalyses the first two reactions in the mRNA cap formation pathway. It is a heterodimer consisting of a large and small subunit. This entry is the large subunit. ; GO: 0006370 mRNA capping; PDB: 3EPP_A 3BGV_C 2VDW_C 1RI5_A 1RI3_A 1RI1_A 1Z3C_A 1RI2_A 2HV9_A 1RI4_A. |
| >PF02390 Methyltransf_4: Putative methyltransferase ; InterPro: IPR003358 This entry represents tRNA (guanine-N-7) methyltransferase (2 | Back alignment and domain information |
|---|
Probab=98.15 E-value=2.3e-05 Score=64.62 Aligned_cols=124 Identities=15% Similarity=0.107 Sum_probs=77.5
Q ss_pred eEEEecCCCCHHHHHHHHh--CCEEEEEcCCCcHHHHHHHHHHHHHcCC-ceEEEEeecCCCCcCcC-CCCCcEEEE--c
Q 026274 73 NVVELGAGTSLPGLVAAKV--GSNVTLTDDSNRIEVLKNMRRVCEMNKL-NCRVMGLTWGFLDASIF-DLNPNIILG--A 146 (241)
Q Consensus 73 ~VLElGcGtGl~sl~la~~--g~~V~~tD~~~~~~~l~~~~~n~~~n~~-~~~~~~l~w~~~~~~~~-~~~fDlIl~--~ 146 (241)
.+||||||.|-..+.+|+. ...++|+|+.. ..+..+.+.+...++ ++.+...+........+ ++++|-|.. .
T Consensus 20 l~lEIG~G~G~~l~~~A~~~Pd~n~iGiE~~~--~~v~~a~~~~~~~~l~Nv~~~~~da~~~l~~~~~~~~v~~i~i~FP 97 (195)
T PF02390_consen 20 LILEIGCGKGEFLIELAKRNPDINFIGIEIRK--KRVAKALRKAEKRGLKNVRFLRGDARELLRRLFPPGSVDRIYINFP 97 (195)
T ss_dssp EEEEET-TTSHHHHHHHHHSTTSEEEEEES-H--HHHHHHHHHHHHHTTSSEEEEES-CTTHHHHHSTTTSEEEEEEES-
T ss_pred eEEEecCCCCHHHHHHHHHCCCCCEEEEecch--HHHHHHHHHHHhhcccceEEEEccHHHHHhhcccCCchheEEEeCC
Confidence 7999999999888888887 44899999995 577777666666565 67777766655333233 357777654 3
Q ss_pred CCcCCCc------cHHHHHHHHHHHhhcCCCeEEEEEeeccCchhHHHHHHHH--cCCEEEE
Q 026274 147 DVFYDAS------AFDDLFATITYLLQSSPGSVFITTYHNRSGHHLIEFLMVK--WGLKCVK 200 (241)
Q Consensus 147 dvly~~~------~~~~ll~~~~~lL~~~~~~~~~~~~~~r~~~~~~~~~~~~--~g~~~~~ 200 (241)
|+..... .-.++++.+.++|+ +||.+.+..............+.. .+|+...
T Consensus 98 DPWpK~rH~krRl~~~~fl~~~~~~L~--~gG~l~~~TD~~~y~~~~~~~~~~~~~~f~~~~ 157 (195)
T PF02390_consen 98 DPWPKKRHHKRRLVNPEFLELLARVLK--PGGELYFATDVEEYAEWMLEQFEESHPGFENIE 157 (195)
T ss_dssp ----SGGGGGGSTTSHHHHHHHHHHEE--EEEEEEEEES-HHHHHHHHHHHHHHSTTEEEE-
T ss_pred CCCcccchhhhhcCCchHHHHHHHHcC--CCCEEEEEeCCHHHHHHHHHHHHhcCcCeEEcc
Confidence 4433321 46789999999998 567776665554443333333344 4777664
|
1.1.33 from EC), which catalyses the formation of N(7)-methylguanine at position 46 (m7G46) in tRNA. Capping of the pre-mRNA 5' end by addition a monomethylated guanosine cap (m(7)G) is an essential and the earliest modification in the biogenesis of mRNA []. The reaction is catalysed by three enzymes: triphosphatase, guanylyltransferase, and tRNA (guanine-N-7) methyltransferase [, ].; GO: 0008176 tRNA (guanine-N7-)-methyltransferase activity, 0006400 tRNA modification; PDB: 3DXZ_A 3DXY_A 3DXX_A 3CKK_A 3P2I_B 3P2K_D 3P2E_A 3MTE_B 3PB3_B 1YZH_B .... |
| >PRK11783 rlmL 23S rRNA m(2)G2445 methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=98.14 E-value=3.5e-05 Score=75.16 Aligned_cols=111 Identities=13% Similarity=0.080 Sum_probs=77.0
Q ss_pred HHHHHHHHHhccCC-CCCCeEEEecCCCCHHHHHHHHhC-----------------------------------------
Q 026274 55 SVILAEYVWQQRYR-FSGANVVELGAGTSLPGLVAAKVG----------------------------------------- 92 (241)
Q Consensus 55 s~~L~~~l~~~~~~-~~~~~VLElGcGtGl~sl~la~~g----------------------------------------- 92 (241)
-..||.-|...... ..+..++|-+||+|.+.+.+|..+
T Consensus 174 ~etlAaa~l~~a~w~~~~~~l~DP~CGSGTilIEAa~~~~~~~pg~~r~~f~f~~~~~~~~~~w~~~~~~a~~~~~~~~~ 253 (702)
T PRK11783 174 KENLAAAILLRSGWPQEGTPLLDPMCGSGTLLIEAAMMAADIAPGLHRERWGFSGWLGHDEALWQELLEEAQERARAGLA 253 (702)
T ss_pred cHHHHHHHHHHcCCCCCCCeEEccCCCccHHHHHHHHHHhcCCCCccccccccccCCCCCHHHHHHHHHHHHHHHhhccc
Confidence 34555555544332 346789999999999988887631
Q ss_pred ---CEEEEEcCCCcHHHHHHHHHHHHHcCCc--eEEEEeecCCCCcCcCCCCCcEEEEcCCcCCC----ccHHHHHHHHH
Q 026274 93 ---SNVTLTDDSNRIEVLKNMRRVCEMNKLN--CRVMGLTWGFLDASIFDLNPNIILGADVFYDA----SAFDDLFATIT 163 (241)
Q Consensus 93 ---~~V~~tD~~~~~~~l~~~~~n~~~n~~~--~~~~~l~w~~~~~~~~~~~fDlIl~~dvly~~----~~~~~ll~~~~ 163 (241)
.+++++|+++ ++++.+++|+..+++. +.+...|+.+...+...++||+|+++.++... .....+.+.+-
T Consensus 254 ~~~~~i~G~Did~--~av~~A~~N~~~~g~~~~i~~~~~D~~~~~~~~~~~~~d~IvtNPPYg~r~~~~~~l~~lY~~lg 331 (702)
T PRK11783 254 ELPSKFYGSDIDP--RVIQAARKNARRAGVAELITFEVKDVADLKNPLPKGPTGLVISNPPYGERLGEEPALIALYSQLG 331 (702)
T ss_pred ccCceEEEEECCH--HHHHHHHHHHHHcCCCcceEEEeCChhhcccccccCCCCEEEECCCCcCccCchHHHHHHHHHHH
Confidence 2699999995 7999999999999884 56666677654333223479999998887543 23445555555
Q ss_pred HHhh
Q 026274 164 YLLQ 167 (241)
Q Consensus 164 ~lL~ 167 (241)
+.++
T Consensus 332 ~~lk 335 (702)
T PRK11783 332 RRLK 335 (702)
T ss_pred HHHH
Confidence 5554
|
|
| >KOG2497 consensus Predicted methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.14 E-value=1.5e-06 Score=74.43 Aligned_cols=125 Identities=25% Similarity=0.308 Sum_probs=83.8
Q ss_pred CCcceEEeccHHHHHHHHHhccCCCCCCeEEEecCCCCHHHHHHHHhCCEEEEEcCCCcHHHHHHHHHHHHHcC---C--
Q 026274 45 EEYGLFVWPCSVILAEYVWQQRYRFSGANVVELGAGTSLPGLVAAKVGSNVTLTDDSNRIEVLKNMRRVCEMNK---L-- 119 (241)
Q Consensus 45 ~~~g~~~W~~s~~L~~~l~~~~~~~~~~~VLElGcGtGl~sl~la~~g~~V~~tD~~~~~~~l~~~~~n~~~n~---~-- 119 (241)
..+|..+|+++..|.+++.+++....+.++.++|||+++.++..++..-.|...+.... +.-++..+...+. .
T Consensus 65 ~~tg~~~w~~al~L~~~l~~~~d~~~~~~v~~l~~gi~~~~~~~a~~~~~v~~~~~~~~--~~~~l~~~~~~~~~~~~~~ 142 (262)
T KOG2497|consen 65 ARTGLSVWESALSLEADLRDKPDLSSELTVEELGCDIALKHVLAARVPDCVVTLDSLRC--AGLLLEEIILLSRDLSLEV 142 (262)
T ss_pred HHhccccchHHHHHHHHHhhCcccccccchHhhccCHHHHHHHHHhcccceecCCccCc--HHHHHHHHHhccccccccc
Confidence 47999999999999999999988888999999999999999777776544444444432 2223333332221 1
Q ss_pred ceEEEEeecCCCC--cCcCCCCCcEEEEcCCcCCCccHHHHHHHHHHHhhcCCCe
Q 026274 120 NCRVMGLTWGFLD--ASIFDLNPNIILGADVFYDASAFDDLFATITYLLQSSPGS 172 (241)
Q Consensus 120 ~~~~~~l~w~~~~--~~~~~~~fDlIl~~dvly~~~~~~~ll~~~~~lL~~~~~~ 172 (241)
..+...+.|.... +......+|+|+++||+|. ....+++.++..+|....++
T Consensus 143 ~~~~~~~~~~~~~~~~~~~~~~~dll~~AdV~yd-~~~~~~~~~~~~lL~~~~~~ 196 (262)
T KOG2497|consen 143 RDSAPELNQAFLESKPETSQEFTDLLGGADVIYD-TELRHLLETLMTLLLRWRGT 196 (262)
T ss_pred cccchhHHHHHHhcCcccccchhhheeccCeeeh-hhhhHHHHHHHHHHHhcccc
Confidence 1122223332111 1111235999999999999 88888999988877654443
|
|
| >COG1352 CheR Methylase of chemotaxis methyl-accepting proteins [Cell motility and secretion / Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=98.14 E-value=2.8e-05 Score=67.10 Aligned_cols=106 Identities=13% Similarity=0.067 Sum_probs=72.9
Q ss_pred CCCeEEEecCCCC----HHHHHHHHhC-------CEEEEEcCCCcHHHHHHHHHHHHH-----cCC--------------
Q 026274 70 SGANVVELGAGTS----LPGLVAAKVG-------SNVTLTDDSNRIEVLKNMRRVCEM-----NKL-------------- 119 (241)
Q Consensus 70 ~~~~VLElGcGtG----l~sl~la~~g-------~~V~~tD~~~~~~~l~~~~~n~~~-----n~~-------------- 119 (241)
+.-+|+-.||+|| -+++.+...+ .+|++||+|. .+|+.|+.-+-. .++
T Consensus 96 ~~irIWSaaCStGEEpYSiAm~l~e~~~~~~~~~~~I~AtDId~--~~L~~A~~G~Y~~~~~~~~~~~~~~~ryF~~~~~ 173 (268)
T COG1352 96 RPIRIWSAACSTGEEPYSLAMLLLEALGKLAGFRVKILATDIDL--SVLEKARAGIYPSRELLRGLPPELLRRYFERGGD 173 (268)
T ss_pred CceEEEecCcCCCccHHHHHHHHHHHhccccCCceEEEEEECCH--HHHHHHhcCCCChhHhhccCCHHHHhhhEeecCC
Confidence 4568999999999 3444454443 2899999996 599888642110 110
Q ss_pred -----------ceEEEEeecCCCCcCcCCCCCcEEEEcCCcCC--CccHHHHHHHHHHHhhcCCCeEEEEEeecc
Q 026274 120 -----------NCRVMGLTWGFLDASIFDLNPNIILGADVFYD--ASAFDDLFATITYLLQSSPGSVFITTYHNR 181 (241)
Q Consensus 120 -----------~~~~~~l~w~~~~~~~~~~~fDlIl~~dvly~--~~~~~~ll~~~~~lL~~~~~~~~~~~~~~r 181 (241)
.+.|..++...... ....||+|+|-+|+-+ .+.-..+++.++..|+ +||.+++++...
T Consensus 174 ~~y~v~~~ir~~V~F~~~NLl~~~~--~~~~fD~IfCRNVLIYFd~~~q~~il~~f~~~L~--~gG~LflG~sE~ 244 (268)
T COG1352 174 GSYRVKEELRKMVRFRRHNLLDDSP--FLGKFDLIFCRNVLIYFDEETQERILRRFADSLK--PGGLLFLGHSET 244 (268)
T ss_pred CcEEEChHHhcccEEeecCCCCCcc--ccCCCCEEEEcceEEeeCHHHHHHHHHHHHHHhC--CCCEEEEccCcc
Confidence 14444444433211 4568999999999844 5678899999999998 788899886543
|
|
| >PRK10611 chemotaxis methyltransferase CheR; Provisional | Back alignment and domain information |
|---|
Probab=98.10 E-value=1.7e-05 Score=69.20 Aligned_cols=104 Identities=15% Similarity=0.048 Sum_probs=71.4
Q ss_pred CCeEEEecCCCC--H--HHHHHHHhC------CEEEEEcCCCcHHHHHHHHHHHHH-----------------------c
Q 026274 71 GANVVELGAGTS--L--PGLVAAKVG------SNVTLTDDSNRIEVLKNMRRVCEM-----------------------N 117 (241)
Q Consensus 71 ~~~VLElGcGtG--l--~sl~la~~g------~~V~~tD~~~~~~~l~~~~~n~~~-----------------------n 117 (241)
..+|+-.||.|| . +++.+...+ .+|++||+|+ .+|+.+++.+-. .
T Consensus 116 ~irIWSAgCStGEEpYSlAmll~e~~~~~~~~~~I~atDIs~--~aL~~Ar~G~Y~~~~~r~~p~~~~~ryF~~~~~~~~ 193 (287)
T PRK10611 116 EYRVWSAAASTGEEPYSIAMTLADTLGTAPGRWKVFASDIDT--EVLEKARSGIYRQEELKTLSPQQLQRYFMRGTGPHE 193 (287)
T ss_pred CEEEEEccccCCHHHHHHHHHHHHhhcccCCCcEEEEEECCH--HHHHHHHhCCCCHHHHhcCCHHHHHHHcccccCCCC
Confidence 368999999999 3 344444431 3799999995 699888764200 0
Q ss_pred C---------CceEEEEeecCCCCcCcCCCCCcEEEEcCCcCCC--ccHHHHHHHHHHHhhcCCCeEEEEEee
Q 026274 118 K---------LNCRVMGLTWGFLDASIFDLNPNIILGADVFYDA--SAFDDLFATITYLLQSSPGSVFITTYH 179 (241)
Q Consensus 118 ~---------~~~~~~~l~w~~~~~~~~~~~fDlIl~~dvly~~--~~~~~ll~~~~~lL~~~~~~~~~~~~~ 179 (241)
+ ..++|...+..+...+ ...+||+|+|-+|+.|. +....+++.+.+.|+ |||.+++++.
T Consensus 194 ~~~~v~~~lr~~V~F~~~NL~~~~~~-~~~~fD~I~cRNvliyF~~~~~~~vl~~l~~~L~--pgG~L~lG~s 263 (287)
T PRK10611 194 GLVRVRQELANYVDFQQLNLLAKQWA-VPGPFDAIFCRNVMIYFDKTTQERILRRFVPLLK--PDGLLFAGHS 263 (287)
T ss_pred ceEEEChHHHccCEEEcccCCCCCCc-cCCCcceeeHhhHHhcCCHHHHHHHHHHHHHHhC--CCcEEEEeCc
Confidence 1 0245555555432111 13589999999998654 678999999999998 7788888863
|
|
| >PF02384 N6_Mtase: N-6 DNA Methylase; InterPro: IPR003356 This domain is fpound in N-6 adenine-specific DNA methylase (2 | Back alignment and domain information |
|---|
Probab=98.09 E-value=7e-05 Score=65.86 Aligned_cols=167 Identities=11% Similarity=0.037 Sum_probs=88.9
Q ss_pred HHHHHHHHhccCCCCCCeEEEecCCCCHHHHHHHH---------hCCEEEEEcCCCcHHHHHHHHHHHHHcCCceE---E
Q 026274 56 VILAEYVWQQRYRFSGANVVELGAGTSLPGLVAAK---------VGSNVTLTDDSNRIEVLKNMRRVCEMNKLNCR---V 123 (241)
Q Consensus 56 ~~L~~~l~~~~~~~~~~~VLElGcGtGl~sl~la~---------~g~~V~~tD~~~~~~~l~~~~~n~~~n~~~~~---~ 123 (241)
..+++++.......++.+|+|-.||+|.+-+.+.+ ...++.|.|+++ .++..++.|+..++.... +
T Consensus 32 ~~i~~l~~~~~~~~~~~~VlDPacGsG~fL~~~~~~i~~~~~~~~~~~i~G~ei~~--~~~~la~~nl~l~~~~~~~~~i 109 (311)
T PF02384_consen 32 REIVDLMVKLLNPKKGDSVLDPACGSGGFLVAAMEYIKEKRNKIKEINIYGIEIDP--EAVALAKLNLLLHGIDNSNINI 109 (311)
T ss_dssp HHHHHHHHHHHTT-TTEEEEETT-TTSHHHHHHHHHHHTCHHHHCCEEEEEEES-H--HHHHHHHHHHHHTTHHCBGCEE
T ss_pred HHHHHHHHhhhhccccceeechhhhHHHHHHHHHHhhcccccccccceeEeecCcH--HHHHHHHhhhhhhccccccccc
Confidence 33445555544555677899999999977666665 244899999995 688888888877765433 3
Q ss_pred EEeecCCCCcCcCCCCCcEEEEcCCcCCC--c-------------------cHHHHHHHHHHHhhcCCCeEEEEEeec--
Q 026274 124 MGLTWGFLDASIFDLNPNIILGADVFYDA--S-------------------AFDDLFATITYLLQSSPGSVFITTYHN-- 180 (241)
Q Consensus 124 ~~l~w~~~~~~~~~~~fDlIl~~dvly~~--~-------------------~~~~ll~~~~~lL~~~~~~~~~~~~~~-- 180 (241)
...+.-.........+||+|++++++-.. . ..-.++....+.|++++...++++...
T Consensus 110 ~~~d~l~~~~~~~~~~~D~ii~NPPf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Fi~~~l~~Lk~~G~~~~Ilp~~~L~ 189 (311)
T PF02384_consen 110 IQGDSLENDKFIKNQKFDVIIGNPPFGSKEWKDEELEKDERFKKYFPPKSNAEYAFIEHALSLLKPGGRAAIILPNGFLF 189 (311)
T ss_dssp EES-TTTSHSCTST--EEEEEEE--CTCES-STGGGCTTCCCTTCSSSTTEHHHHHHHHHHHTEEEEEEEEEEEEHHHHH
T ss_pred cccccccccccccccccccccCCCCccccccccccccccccccccCCCccchhhhhHHHHHhhcccccceeEEecchhhh
Confidence 33332211111113589999999877432 0 112466667778875544456666322
Q ss_pred cCc--hhHHHHHHHHcCCEEEEEecCCCCCCcccccccCCCeEEEEEEeccC
Q 026274 181 RSG--HHLIEFLMVKWGLKCVKLVDGFSFLPHYKARELNGNIQLAEIVLNHE 230 (241)
Q Consensus 181 r~~--~~~~~~~~~~~g~~~~~i~~~~~~~p~~~~~~~~~~~~l~~i~~~~~ 230 (241)
+.. ....+.++++.........-.--+ ..-.....++.+.+...
T Consensus 190 ~~~~~~~iR~~ll~~~~i~aVI~Lp~~~F------~~t~v~t~ilil~k~~~ 235 (311)
T PF02384_consen 190 SSSSEKKIRKYLLENGYIEAVISLPSNLF------KPTGVPTSILILNKKKP 235 (311)
T ss_dssp GSTHHHHHHHHHHHHEEEEEEEE--TTSS------SSSSS-EEEEEEEESSS
T ss_pred ccchHHHHHHHHHhhchhhEEeeccccee------cccCcCceEEEEeeccc
Confidence 222 234455666655544332111111 12333566666665553
|
1.1.72 from EC) from Type I and Type IC restriction systems. These enzymes are responsible for the methylation of specific DNA sequences in order to prevent the host from digesting its own genome via its restriction enzymes. These methylases have the same sequence specificity as their corresponding restriction enzymes. The type I restriction and modification system is composed of three polypeptides R, M and S. The M and S subunits together form a methyltransferase that methylates two adenine residues in complementary strands of a bipartite DNA recognition sequence. In the presence of the R subunit, the complex can also act as an endonuclease, binding to the same target sequence but cutting the DNA some distance from this site. Whether the DNA is cut or modified depends on the methylation state of the target sequence. When the target site is unmodified, the DNA is cut. When the target site is hemimethylated, the complex acts as a maintenance methyltransferase, modifying the DNA so that both strands become methylated.; GO: 0003677 DNA binding, 0008170 N-methyltransferase activity, 0006306 DNA methylation; PDB: 2F8L_A 2Y7C_C 2Y7H_C 2AR0_B 3KHK_A 3LKD_A 2OKC_B. |
| >PRK11760 putative 23S rRNA C2498 ribose 2'-O-ribose methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=98.08 E-value=0.0001 Score=65.42 Aligned_cols=102 Identities=14% Similarity=0.081 Sum_probs=64.5
Q ss_pred ccHHHHHHHHHhcc-------CCCCCCeEEEecCCCCHHHHHHHHhCCEEEEEcCCCcHHHHHHHHHHHHHcCCceEEEE
Q 026274 53 PCSVILAEYVWQQR-------YRFSGANVVELGAGTSLPGLVAAKVGSNVTLTDDSNRIEVLKNMRRVCEMNKLNCRVMG 125 (241)
Q Consensus 53 ~~s~~L~~~l~~~~-------~~~~~~~VLElGcGtGl~sl~la~~g~~V~~tD~~~~~~~l~~~~~n~~~n~~~~~~~~ 125 (241)
.|++.|.+.+..-. ...+|+++|||||++|-++-.+.+.|++|+++|..+ |-+.+. +...+....
T Consensus 187 Rs~lKLeEA~~~F~~~~~~~~~~~~g~~vlDLGAsPGGWT~~L~~rG~~V~AVD~g~---l~~~L~-----~~~~V~h~~ 258 (357)
T PRK11760 187 RSTLKLEEAFHVFIPRDEWDERLAPGMRAVDLGAAPGGWTYQLVRRGMFVTAVDNGP---MAQSLM-----DTGQVEHLR 258 (357)
T ss_pred hHHHHHHHHHHhcccchhhhcccCCCCEEEEeCCCCcHHHHHHHHcCCEEEEEechh---cCHhhh-----CCCCEEEEe
Confidence 45555555544322 235789999999999999999999999999999774 433332 233344443
Q ss_pred eecCCCCcCcCCCCCcEEEEcCCcCCCccHHHHHHHHHHHhhc
Q 026274 126 LTWGFLDASIFDLNPNIILGADVFYDASAFDDLFATITYLLQS 168 (241)
Q Consensus 126 l~w~~~~~~~~~~~fDlIl~~dvly~~~~~~~ll~~~~~lL~~ 168 (241)
.+-.....+ ..++|+++ +|++..+. .+++.+.+.+..
T Consensus 259 ~d~fr~~p~--~~~vDwvV-cDmve~P~---rva~lm~~Wl~~ 295 (357)
T PRK11760 259 ADGFKFRPP--RKNVDWLV-CDMVEKPA---RVAELMAQWLVN 295 (357)
T ss_pred ccCcccCCC--CCCCCEEE-EecccCHH---HHHHHHHHHHhc
Confidence 332222111 45799988 57776554 445555566653
|
|
| >PF02527 GidB: rRNA small subunit methyltransferase G; InterPro: IPR003682 This entry represents a rRNA small subunit methyltransferase G | Back alignment and domain information |
|---|
Probab=98.08 E-value=9.6e-05 Score=60.40 Aligned_cols=117 Identities=20% Similarity=0.321 Sum_probs=75.1
Q ss_pred eEEEecCCCCHHHHHHHHhCC--EEEEEcCCCcHHHHHHHHHHHHHcCCc-eEEEEeecCCCCcCcCCCCCcEEEEcCCc
Q 026274 73 NVVELGAGTSLPGLVAAKVGS--NVTLTDDSNRIEVLKNMRRVCEMNKLN-CRVMGLTWGFLDASIFDLNPNIILGADVF 149 (241)
Q Consensus 73 ~VLElGcGtGl~sl~la~~g~--~V~~tD~~~~~~~l~~~~~n~~~n~~~-~~~~~l~w~~~~~~~~~~~fDlIl~~dvl 149 (241)
+++|+|+|.|++|+.+|-... +++++|-.. .=+..++.-+..-+++ +++...+.++ .....+||+|++-
T Consensus 51 ~~lDiGSGaGfPGipLaI~~p~~~~~LvEs~~--KK~~FL~~~~~~L~L~nv~v~~~R~E~---~~~~~~fd~v~aR--- 122 (184)
T PF02527_consen 51 KVLDIGSGAGFPGIPLAIARPDLQVTLVESVG--KKVAFLKEVVRELGLSNVEVINGRAEE---PEYRESFDVVTAR--- 122 (184)
T ss_dssp EEEEETSTTTTTHHHHHHH-TTSEEEEEESSH--HHHHHHHHHHHHHT-SSEEEEES-HHH---TTTTT-EEEEEEE---
T ss_pred eEEecCCCCCChhHHHHHhCCCCcEEEEeCCc--hHHHHHHHHHHHhCCCCEEEEEeeecc---cccCCCccEEEee---
Confidence 799999999999999998743 899999995 3444555544444443 6677666554 2345689999984
Q ss_pred CCCccHHHHHHHHHHHhhcCCCeEEEEEeeccCchhHHHHH---HHHcCCEEEEE
Q 026274 150 YDASAFDDLFATITYLLQSSPGSVFITTYHNRSGHHLIEFL---MVKWGLKCVKL 201 (241)
Q Consensus 150 y~~~~~~~ll~~~~~lL~~~~~~~~~~~~~~r~~~~~~~~~---~~~~g~~~~~i 201 (241)
-...+..+++.+..+++ ++|.+++- ..+...+..... .+..+.+...+
T Consensus 123 -Av~~l~~l~~~~~~~l~--~~G~~l~~-KG~~~~~El~~~~~~~~~~~~~~~~v 173 (184)
T PF02527_consen 123 -AVAPLDKLLELARPLLK--PGGRLLAY-KGPDAEEELEEAKKAWKKLGLKVLSV 173 (184)
T ss_dssp -SSSSHHHHHHHHGGGEE--EEEEEEEE-ESS--HHHHHTHHHHHHCCCEEEEEE
T ss_pred -hhcCHHHHHHHHHHhcC--CCCEEEEE-cCCChHHHHHHHHhHHHHhCCEEeee
Confidence 34578899999999988 55554443 333333333333 34555555555
|
Previously identified as a glucose-inhibited division protein B that appears to be present and in a single copy in all complete eubacterial genomes so far sequenced. Specifically methylates the N7 position of a guanosine in 16S rRNA [, , ].; GO: 0008649 rRNA methyltransferase activity, 0006364 rRNA processing, 0005737 cytoplasm; PDB: 1XDZ_A 3G88_A 3G8A_B 3G89_B 3G8B_B 1JSX_A. |
| >COG1189 Predicted rRNA methylase [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=98.04 E-value=0.00022 Score=59.95 Aligned_cols=162 Identities=18% Similarity=0.232 Sum_probs=100.0
Q ss_pred EEeccHHHHHHHHHhccCCCCCCeEEEecCCCCHHHHHHHHhCC-EEEEEcCCCcHHHHHHHHHHHHHcCCceE-EEEee
Q 026274 50 FVWPCSVILAEYVWQQRYRFSGANVVELGAGTSLPGLVAAKVGS-NVTLTDDSNRIEVLKNMRRVCEMNKLNCR-VMGLT 127 (241)
Q Consensus 50 ~~W~~s~~L~~~l~~~~~~~~~~~VLElGcGtGl~sl~la~~g~-~V~~tD~~~~~~~l~~~~~n~~~n~~~~~-~~~l~ 127 (241)
.+=.+++.|...+....-..+|+.+||+|+-||-+...+.+.|| +|+++|..-+ ++-..+|. ..++. ....+
T Consensus 59 yVSRG~~KL~~ale~F~l~~k~kv~LDiGsSTGGFTd~lLq~gAk~VyavDVG~~-Ql~~kLR~-----d~rV~~~E~tN 132 (245)
T COG1189 59 YVSRGGLKLEKALEEFELDVKGKVVLDIGSSTGGFTDVLLQRGAKHVYAVDVGYG-QLHWKLRN-----DPRVIVLERTN 132 (245)
T ss_pred ccccHHHHHHHHHHhcCcCCCCCEEEEecCCCccHHHHHHHcCCcEEEEEEccCC-ccCHhHhc-----CCcEEEEecCC
Confidence 34478899999998888888999999999999999999999998 8999999964 23233332 22222 23333
Q ss_pred cCCCCcCcCCCCCcEEEEcCCcCCCccHHHHHHHHHHHhhcCCCeEEEEEeec-------------cCc--h----hHHH
Q 026274 128 WGFLDASIFDLNPNIILGADVFYDASAFDDLFATITYLLQSSPGSVFITTYHN-------------RSG--H----HLIE 188 (241)
Q Consensus 128 w~~~~~~~~~~~fDlIl~~dvly~~~~~~~ll~~~~~lL~~~~~~~~~~~~~~-------------r~~--~----~~~~ 188 (241)
......+.+.+.+|+|++- +=|- .+..++..+..+++++...+.++-... |.. + ..+.
T Consensus 133 ~r~l~~~~~~~~~d~~v~D-vSFI--SL~~iLp~l~~l~~~~~~~v~LvKPQFEagr~~v~kkGvv~d~~~~~~v~~~i~ 209 (245)
T COG1189 133 VRYLTPEDFTEKPDLIVID-VSFI--SLKLILPALLLLLKDGGDLVLLVKPQFEAGREQVGKKGVVRDPKLHAEVLSKIE 209 (245)
T ss_pred hhhCCHHHcccCCCeEEEE-eehh--hHHHHHHHHHHhcCCCceEEEEecchhhhhhhhcCcCceecCcchHHHHHHHHH
Confidence 3333333344578888853 3332 567778888888874433333322110 111 1 1223
Q ss_pred HHHHHcCCEEEEEecCCCCCCcccccccCCCeEEEEEEe
Q 026274 189 FLMVKWGLKCVKLVDGFSFLPHYKARELNGNIQLAEIVL 227 (241)
Q Consensus 189 ~~~~~~g~~~~~i~~~~~~~p~~~~~~~~~~~~l~~i~~ 227 (241)
.++...||.+..+... |- .+-.+++|.+-.-+
T Consensus 210 ~~~~~~g~~~~gl~~S----pi---~G~~GNiE~l~~~~ 241 (245)
T COG1189 210 NFAKELGFQVKGLIKS----PI---KGGKGNIEFLLLLK 241 (245)
T ss_pred HHHhhcCcEEeeeEcc----Cc---cCCCCcEeeeeeee
Confidence 3466779999887321 11 24455777665543
|
|
| >PF05971 Methyltransf_10: Protein of unknown function (DUF890); InterPro: IPR010286 This family consists of several conserved hypothetical proteins from both eukaryotes and prokaryotes | Back alignment and domain information |
|---|
Probab=97.99 E-value=5e-05 Score=66.32 Aligned_cols=82 Identities=21% Similarity=0.232 Sum_probs=45.7
Q ss_pred CCeEEEecCCCC-HHHHHHHH-hCCEEEEEcCCCcHHHHHHHHHHHHHc-CCc--eEEEEeec-CCCCcCc--CCCCCcE
Q 026274 71 GANVVELGAGTS-LPGLVAAK-VGSNVTLTDDSNRIEVLKNMRRVCEMN-KLN--CRVMGLTW-GFLDASI--FDLNPNI 142 (241)
Q Consensus 71 ~~~VLElGcGtG-l~sl~la~-~g~~V~~tD~~~~~~~l~~~~~n~~~n-~~~--~~~~~l~w-~~~~~~~--~~~~fDl 142 (241)
..++||||+|.. +..+..++ .|-++++||+++ ..++.|++|++.| ++. +++....= ....... ..+.||+
T Consensus 103 ~v~glDIGTGAscIYpLLg~~~~~W~fvaTdID~--~sl~~A~~nv~~N~~L~~~I~l~~~~~~~~i~~~i~~~~e~~df 180 (299)
T PF05971_consen 103 KVRGLDIGTGASCIYPLLGAKLYGWSFVATDIDP--KSLESARENVERNPNLESRIELRKQKNPDNIFDGIIQPNERFDF 180 (299)
T ss_dssp --EEEEES-TTTTHHHHHHHHHH--EEEEEES-H--HHHHHHHHHHHHT-T-TTTEEEEE--ST-SSTTTSTT--S-EEE
T ss_pred ceEeecCCccHHHHHHHHhhhhcCCeEEEecCCH--HHHHHHHHHHHhccccccceEEEEcCCccccchhhhcccceeeE
Confidence 457999999966 55666666 477999999995 6999999999999 664 54443321 1111111 1248999
Q ss_pred EEEcCCcCCCcc
Q 026274 143 ILGADVFYDASA 154 (241)
Q Consensus 143 Il~~dvly~~~~ 154 (241)
.+|++++|....
T Consensus 181 tmCNPPFy~s~~ 192 (299)
T PF05971_consen 181 TMCNPPFYSSQE 192 (299)
T ss_dssp EEE-----SS--
T ss_pred EecCCccccChh
Confidence 999999998543
|
The function of members of this family are unknown but are predicted to be SAM-dependent methyltransferases.; GO: 0008168 methyltransferase activity; PDB: 2H00_A. |
| >COG3963 Phospholipid N-methyltransferase [Lipid metabolism] | Back alignment and domain information |
|---|
Probab=97.99 E-value=0.00012 Score=58.32 Aligned_cols=124 Identities=18% Similarity=0.142 Sum_probs=84.9
Q ss_pred EEeccHHHHHHHHHhccCCCCCCeEEEecCCCCHHHHHHHHhCC---EEEEEcCCCcHHHHHHHHHHHHHcCCceEEEEe
Q 026274 50 FVWPCSVILAEYVWQQRYRFSGANVVELGAGTSLPGLVAAKVGS---NVTLTDDSNRIEVLKNMRRVCEMNKLNCRVMGL 126 (241)
Q Consensus 50 ~~W~~s~~L~~~l~~~~~~~~~~~VLElGcGtGl~sl~la~~g~---~V~~tD~~~~~~~l~~~~~n~~~n~~~~~~~~l 126 (241)
.+=|+|-.+|+-+.+.-..-.|.-|||+|.|||.+.-.+.+.|. +++++++++ +....+.+.... .++...
T Consensus 28 aI~PsSs~lA~~M~s~I~pesglpVlElGPGTGV~TkaIL~~gv~~~~L~~iE~~~--dF~~~L~~~~p~----~~ii~g 101 (194)
T COG3963 28 AILPSSSILARKMASVIDPESGLPVLELGPGTGVITKAILSRGVRPESLTAIEYSP--DFVCHLNQLYPG----VNIING 101 (194)
T ss_pred eecCCcHHHHHHHHhccCcccCCeeEEEcCCccHhHHHHHhcCCCccceEEEEeCH--HHHHHHHHhCCC----cccccc
Confidence 34588888888888877777899999999999999999888875 799999995 677766653321 122333
Q ss_pred ecCCCC---cCcCCCCCcEEEEcCCcCCCcc--HHHHHHHHHHHhhcCCCeEEEEEeec
Q 026274 127 TWGFLD---ASIFDLNPNIILGADVFYDASA--FDDLFATITYLLQSSPGSVFITTYHN 180 (241)
Q Consensus 127 ~w~~~~---~~~~~~~fDlIl~~dvly~~~~--~~~ll~~~~~lL~~~~~~~~~~~~~~ 180 (241)
|..+.. .+..+..||.|+++=++-+.+. --++++.+...|. .+|.++.+.|.+
T Consensus 102 da~~l~~~l~e~~gq~~D~viS~lPll~~P~~~~iaile~~~~rl~-~gg~lvqftYgp 159 (194)
T COG3963 102 DAFDLRTTLGEHKGQFFDSVISGLPLLNFPMHRRIAILESLLYRLP-AGGPLVQFTYGP 159 (194)
T ss_pred chhhHHHHHhhcCCCeeeeEEeccccccCcHHHHHHHHHHHHHhcC-CCCeEEEEEecC
Confidence 322221 1223447999999888766543 3455666666664 356677777663
|
|
| >COG0030 KsgA Dimethyladenosine transferase (rRNA methylation) [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=97.98 E-value=6.5e-05 Score=64.33 Aligned_cols=89 Identities=15% Similarity=0.112 Sum_probs=61.6
Q ss_pred HHHHHhccCCCCCCeEEEecCCCCHHHHHHHHhCCEEEEEcCCCcHHHHHHHHHHHHHcCCceEEEEeecCCCCcCcCCC
Q 026274 59 AEYVWQQRYRFSGANVVELGAGTSLPGLVAAKVGSNVTLTDDSNRIEVLKNMRRVCEMNKLNCRVMGLTWGFLDASIFDL 138 (241)
Q Consensus 59 ~~~l~~~~~~~~~~~VLElGcGtGl~sl~la~~g~~V~~tD~~~~~~~l~~~~~n~~~n~~~~~~~~l~w~~~~~~~~~~ 138 (241)
.+.+.......++.+|||||+|.|.+...|++.+++|+++++++ .+++.+++... ...++++...|.-....+...
T Consensus 19 ~~kIv~~a~~~~~d~VlEIGpG~GaLT~~Ll~~~~~v~aiEiD~--~l~~~L~~~~~-~~~n~~vi~~DaLk~d~~~l~- 94 (259)
T COG0030 19 IDKIVEAANISPGDNVLEIGPGLGALTEPLLERAARVTAIEIDR--RLAEVLKERFA-PYDNLTVINGDALKFDFPSLA- 94 (259)
T ss_pred HHHHHHhcCCCCCCeEEEECCCCCHHHHHHHhhcCeEEEEEeCH--HHHHHHHHhcc-cccceEEEeCchhcCcchhhc-
Confidence 45555555555678999999999999999999999999999996 58888887654 334455555444433211111
Q ss_pred CCcEEEEcCCcCCC
Q 026274 139 NPNIILGADVFYDA 152 (241)
Q Consensus 139 ~fDlIl~~dvly~~ 152 (241)
.++.|+++=+ |+.
T Consensus 95 ~~~~vVaNlP-Y~I 107 (259)
T COG0030 95 QPYKVVANLP-YNI 107 (259)
T ss_pred CCCEEEEcCC-Ccc
Confidence 5778886644 443
|
|
| >COG0220 Predicted S-adenosylmethionine-dependent methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.97 E-value=7.3e-05 Score=63.05 Aligned_cols=108 Identities=16% Similarity=0.037 Sum_probs=81.4
Q ss_pred CeEEEecCCCCHHHHHHHHhCC--EEEEEcCCCcHHHHHHHHHHHHHcCC-ceEEEEeecCCCCcCcCCC-CCcEEEE--
Q 026274 72 ANVVELGAGTSLPGLVAAKVGS--NVTLTDDSNRIEVLKNMRRVCEMNKL-NCRVMGLTWGFLDASIFDL-NPNIILG-- 145 (241)
Q Consensus 72 ~~VLElGcGtGl~sl~la~~g~--~V~~tD~~~~~~~l~~~~~n~~~n~~-~~~~~~l~w~~~~~~~~~~-~fDlIl~-- 145 (241)
..+||||||.|-.-+.+|+... .++|+++.. ..+..+.+.+...++ ++++...|.....+...+. +.|-|..
T Consensus 50 pi~lEIGfG~G~~l~~~A~~nP~~nfiGiEi~~--~~v~~~l~k~~~~~l~Nlri~~~DA~~~l~~~~~~~sl~~I~i~F 127 (227)
T COG0220 50 PIVLEIGFGMGEFLVEMAKKNPEKNFLGIEIRV--PGVAKALKKIKELGLKNLRLLCGDAVEVLDYLIPDGSLDKIYINF 127 (227)
T ss_pred cEEEEECCCCCHHHHHHHHHCCCCCEEEEEEeh--HHHHHHHHHHHHcCCCcEEEEcCCHHHHHHhcCCCCCeeEEEEEC
Confidence 4799999999999999999865 799999996 477777777888888 8988887776655555554 7776653
Q ss_pred cCCcCCCc------cHHHHHHHHHHHhhcCCCeEEEEEeeccCc
Q 026274 146 ADVFYDAS------AFDDLFATITYLLQSSPGSVFITTYHNRSG 183 (241)
Q Consensus 146 ~dvly~~~------~~~~ll~~~~~lL~~~~~~~~~~~~~~r~~ 183 (241)
.|+.+-.. ....+++.+.+.|+ +||.+.+.......
T Consensus 128 PDPWpKkRH~KRRl~~~~fl~~~a~~Lk--~gG~l~~aTD~~~y 169 (227)
T COG0220 128 PDPWPKKRHHKRRLTQPEFLKLYARKLK--PGGVLHFATDNEEY 169 (227)
T ss_pred CCCCCCccccccccCCHHHHHHHHHHcc--CCCEEEEEecCHHH
Confidence 45554322 46789999999998 67777777655444
|
|
| >KOG2940 consensus Predicted methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.96 E-value=2.2e-05 Score=65.59 Aligned_cols=100 Identities=11% Similarity=0.116 Sum_probs=76.7
Q ss_pred CCeEEEecCCCCHHHHHHHHhCC-EEEEEcCCCcHHHHHHHHHHHHHcCCceEEEEeecCCCCcCcCCCCCcEEEEcCCc
Q 026274 71 GANVVELGAGTSLPGLVAAKVGS-NVTLTDDSNRIEVLKNMRRVCEMNKLNCRVMGLTWGFLDASIFDLNPNIILGADVF 149 (241)
Q Consensus 71 ~~~VLElGcGtGl~sl~la~~g~-~V~~tD~~~~~~~l~~~~~n~~~n~~~~~~~~l~w~~~~~~~~~~~fDlIl~~dvl 149 (241)
...++|||||.|.++-.+...|. +++.+|.|- .|++.++. ++.+++.......| +...+..++++|+|+++-.+
T Consensus 73 fp~a~diGcs~G~v~rhl~~e~vekli~~DtS~--~M~~s~~~-~qdp~i~~~~~v~D--EE~Ldf~ens~DLiisSlsl 147 (325)
T KOG2940|consen 73 FPTAFDIGCSLGAVKRHLRGEGVEKLIMMDTSY--DMIKSCRD-AQDPSIETSYFVGD--EEFLDFKENSVDLIISSLSL 147 (325)
T ss_pred CcceeecccchhhhhHHHHhcchhheeeeecch--HHHHHhhc-cCCCceEEEEEecc--hhcccccccchhhhhhhhhh
Confidence 35799999999999988888776 899999995 68887775 33344443333222 22224456799999999999
Q ss_pred CCCccHHHHHHHHHHHhhcCCCeEEEEE
Q 026274 150 YDASAFDDLFATITYLLQSSPGSVFITT 177 (241)
Q Consensus 150 y~~~~~~~ll~~~~~lL~~~~~~~~~~~ 177 (241)
++..+++.-+..++..|| |++.|+.+
T Consensus 148 HW~NdLPg~m~~ck~~lK--PDg~Fias 173 (325)
T KOG2940|consen 148 HWTNDLPGSMIQCKLALK--PDGLFIAS 173 (325)
T ss_pred hhhccCchHHHHHHHhcC--CCccchhH
Confidence 999999999999999998 77887755
|
|
| >PLN02823 spermine synthase | Back alignment and domain information |
|---|
Probab=97.93 E-value=7e-05 Score=66.78 Aligned_cols=102 Identities=19% Similarity=0.229 Sum_probs=69.0
Q ss_pred CCCeEEEecCCCCHHHHHHHHhC--CEEEEEcCCCcHHHHHHHHHHHHHc-----CCceEEEEeecCCCCcCcCCCCCcE
Q 026274 70 SGANVVELGAGTSLPGLVAAKVG--SNVTLTDDSNRIEVLKNMRRVCEMN-----KLNCRVMGLTWGFLDASIFDLNPNI 142 (241)
Q Consensus 70 ~~~~VLElGcGtGl~sl~la~~g--~~V~~tD~~~~~~~l~~~~~n~~~n-----~~~~~~~~l~w~~~~~~~~~~~fDl 142 (241)
+.++||.||+|.|.....+.+.. .+|+++|+++ ++++.+++....+ +.++++...|...... ...++||+
T Consensus 103 ~pk~VLiiGgG~G~~~re~l~~~~~~~v~~VEiD~--~vv~lar~~~~~~~~~~~dprv~v~~~Da~~~L~-~~~~~yDv 179 (336)
T PLN02823 103 NPKTVFIMGGGEGSTAREVLRHKTVEKVVMCDIDQ--EVVDFCRKHLTVNREAFCDKRLELIINDARAELE-KRDEKFDV 179 (336)
T ss_pred CCCEEEEECCCchHHHHHHHhCCCCCeEEEEECCH--HHHHHHHHhcccccccccCCceEEEEChhHHHHh-hCCCCccE
Confidence 45789999999998888777753 3899999995 7999999887644 2345555544333321 22458999
Q ss_pred EEEcCCcCCC-----c---cHHHHHH-HHHHHhhcCCCeEEEEEe
Q 026274 143 ILGADVFYDA-----S---AFDDLFA-TITYLLQSSPGSVFITTY 178 (241)
Q Consensus 143 Il~~dvly~~-----~---~~~~ll~-~~~~lL~~~~~~~~~~~~ 178 (241)
|+. |+. .+ . .-..+++ .+++.|+ ++|++++-.
T Consensus 180 Ii~-D~~-dp~~~~~~~~Lyt~eF~~~~~~~~L~--p~Gvlv~q~ 220 (336)
T PLN02823 180 IIG-DLA-DPVEGGPCYQLYTKSFYERIVKPKLN--PGGIFVTQA 220 (336)
T ss_pred EEe-cCC-CccccCcchhhccHHHHHHHHHHhcC--CCcEEEEec
Confidence 995 331 21 1 1235666 7889998 677776543
|
|
| >TIGR02987 met_A_Alw26 type II restriction m6 adenine DNA methyltransferase, Alw26I/Eco31I/Esp3I family | Back alignment and domain information |
|---|
Probab=97.89 E-value=0.001 Score=62.95 Aligned_cols=80 Identities=11% Similarity=0.066 Sum_probs=53.1
Q ss_pred CCCeEEEecCCCCHHHHHHHHhC----------CEEEEEcCCCcHHHHHHHHHHHHHcC-CceEEEEeecCCCC---cCc
Q 026274 70 SGANVVELGAGTSLPGLVAAKVG----------SNVTLTDDSNRIEVLKNMRRVCEMNK-LNCRVMGLTWGFLD---ASI 135 (241)
Q Consensus 70 ~~~~VLElGcGtGl~sl~la~~g----------~~V~~tD~~~~~~~l~~~~~n~~~n~-~~~~~~~l~w~~~~---~~~ 135 (241)
...+|||.|||+|.+.+.++... .++++.|+++ .+++.++.|+...+ ....+...+..... ...
T Consensus 31 ~~~~ilDP~cGsG~fl~~~~~~~~~~~~~~~~~~~i~g~DId~--~a~~~a~~~l~~~~~~~~~i~~~d~l~~~~~~~~~ 108 (524)
T TIGR02987 31 TKTKIIDPCCGDGRLIAALLKKNEEINYFKEVELNIYFADIDK--TLLKRAKKLLGEFALLEINVINFNSLSYVLLNIES 108 (524)
T ss_pred cceEEEeCCCCccHHHHHHHHHHHhcCCcccceeeeeeechhH--HHHHHHHHHHhhcCCCCceeeeccccccccccccc
Confidence 45689999999998877776532 3689999995 69999998887654 22333322211110 011
Q ss_pred CCCCCcEEEEcCCcCC
Q 026274 136 FDLNPNIILGADVFYD 151 (241)
Q Consensus 136 ~~~~fDlIl~~dvly~ 151 (241)
..++||+|+++++.-.
T Consensus 109 ~~~~fD~IIgNPPy~~ 124 (524)
T TIGR02987 109 YLDLFDIVITNPPYGR 124 (524)
T ss_pred ccCcccEEEeCCCccc
Confidence 1247999999998753
|
Members of this family are the m6-adenine DNA methyltransferase protein, or domain of a fusion protein that also carries m5 cytosine methyltransferase activity, of type II restriction systems of the Alw26I/Eco31I/Esp3I family. A methyltransferase of this family is alway accompanied by a type II restriction endonuclease from the Alw26I/Eco31I/Esp3I family (TIGR02986) and by an adenine-specific modification methyltransferase. Members of this family are unusual in that regions of similarity to homologs outside this family are circularly permuted. |
| >PLN02232 ubiquinone biosynthesis methyltransferase | Back alignment and domain information |
|---|
Probab=97.82 E-value=0.0002 Score=57.01 Aligned_cols=78 Identities=13% Similarity=-0.048 Sum_probs=58.0
Q ss_pred EEEcCCCcHHHHHHHHHHHHHcC----CceEEEEeecCCCCcCcCCCCCcEEEEcCCcCCCccHHHHHHHHHHHhhcCCC
Q 026274 96 TLTDDSNRIEVLKNMRRVCEMNK----LNCRVMGLTWGFLDASIFDLNPNIILGADVFYDASAFDDLFATITYLLQSSPG 171 (241)
Q Consensus 96 ~~tD~~~~~~~l~~~~~n~~~n~----~~~~~~~l~w~~~~~~~~~~~fDlIl~~dvly~~~~~~~ll~~~~~lL~~~~~ 171 (241)
+++|+|+ +||+.++++....+ .++++...+..+. +..+++||+|+++.++.+..+...+++.+.++|+ ||
T Consensus 1 ~GvD~S~--~ML~~A~~~~~~~~~~~~~~i~~~~~d~~~l--p~~~~~fD~v~~~~~l~~~~d~~~~l~ei~rvLk--pG 74 (160)
T PLN02232 1 MGLDFSS--EQLAVAATRQSLKARSCYKCIEWIEGDAIDL--PFDDCEFDAVTMGYGLRNVVDRLRAMKEMYRVLK--PG 74 (160)
T ss_pred CeEcCCH--HHHHHHHHhhhcccccCCCceEEEEechhhC--CCCCCCeeEEEecchhhcCCCHHHHHHHHHHHcC--cC
Confidence 4789995 79999987665322 2467777666543 3445689999999999999999999999999998 55
Q ss_pred eEEE-EEee
Q 026274 172 SVFI-TTYH 179 (241)
Q Consensus 172 ~~~~-~~~~ 179 (241)
|.++ +.+.
T Consensus 75 G~l~i~d~~ 83 (160)
T PLN02232 75 SRVSILDFN 83 (160)
T ss_pred eEEEEEECC
Confidence 5544 4443
|
|
| >PF05891 Methyltransf_PK: AdoMet dependent proline di-methyltransferase; InterPro: IPR008576 This family consists of several eukaryotic proteins of unknown function that are S-adenosyl-L-methionine-dependent methyltransferase-like | Back alignment and domain information |
|---|
Probab=97.80 E-value=0.00019 Score=59.73 Aligned_cols=133 Identities=13% Similarity=0.093 Sum_probs=80.7
Q ss_pred CCCeEEEecCCCCHHHHHH-HHhCCEEEEEcCCCcHHHHHHHHHHHHHcCC-ceEEEEeecCCCCcCcCCCCCcEEEEcC
Q 026274 70 SGANVVELGAGTSLPGLVA-AKVGSNVTLTDDSNRIEVLKNMRRVCEMNKL-NCRVMGLTWGFLDASIFDLNPNIILGAD 147 (241)
Q Consensus 70 ~~~~VLElGcGtGl~sl~l-a~~g~~V~~tD~~~~~~~l~~~~~n~~~n~~-~~~~~~l~w~~~~~~~~~~~fDlIl~~d 147 (241)
...++||.|||.|.++-.+ ...-.+|-++|..+ ..++.+++....... ..++...-..++..+ ..+||+|++-=
T Consensus 55 ~~~~alDcGAGIGRVTk~lLl~~f~~VDlVEp~~--~Fl~~a~~~l~~~~~~v~~~~~~gLQ~f~P~--~~~YDlIW~QW 130 (218)
T PF05891_consen 55 KFNRALDCGAGIGRVTKGLLLPVFDEVDLVEPVE--KFLEQAKEYLGKDNPRVGEFYCVGLQDFTPE--EGKYDLIWIQW 130 (218)
T ss_dssp --SEEEEET-TTTHHHHHTCCCC-SEEEEEES-H--HHHHHHHHHTCCGGCCEEEEEES-GGG------TT-EEEEEEES
T ss_pred CcceEEecccccchhHHHHHHHhcCEeEEeccCH--HHHHHHHHHhcccCCCcceEEecCHhhccCC--CCcEeEEEehH
Confidence 4568999999999988755 44545899999995 588888876554222 234444333333211 35899999887
Q ss_pred CcCCC--ccHHHHHHHHHHHhhcCCCeEEEEE----------eec-----cCchhHHHHHHHHcCCEEEEEecCCCCC
Q 026274 148 VFYDA--SAFDDLFATITYLLQSSPGSVFITT----------YHN-----RSGHHLIEFLMVKWGLKCVKLVDGFSFL 208 (241)
Q Consensus 148 vly~~--~~~~~ll~~~~~lL~~~~~~~~~~~----------~~~-----r~~~~~~~~~~~~~g~~~~~i~~~~~~~ 208 (241)
|+-|. .++-.+++.++..|+ |+|+|++- +.. .++...+..+.++.|+++..-..+-.++
T Consensus 131 ~lghLTD~dlv~fL~RCk~~L~--~~G~IvvKEN~~~~~~~~~D~~DsSvTRs~~~~~~lF~~AGl~~v~~~~Q~~fP 206 (218)
T PF05891_consen 131 CLGHLTDEDLVAFLKRCKQALK--PNGVIVVKENVSSSGFDEFDEEDSSVTRSDEHFRELFKQAGLRLVKEEKQKGFP 206 (218)
T ss_dssp -GGGS-HHHHHHHHHHHHHHEE--EEEEEEEEEEEESSSEEEEETTTTEEEEEHHHHHHHHHHCT-EEEEEEE-TT--
T ss_pred hhccCCHHHHHHHHHHHHHhCc--CCcEEEEEecCCCCCCcccCCccCeeecCHHHHHHHHHHcCCEEEEeccccCCC
Confidence 77664 578889999999998 45665532 111 1123456777899999998874443333
|
; GO: 0008168 methyltransferase activity; PDB: 1XTP_A 2EX4_B. |
| >PF09243 Rsm22: Mitochondrial small ribosomal subunit Rsm22; InterPro: IPR015324 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms | Back alignment and domain information |
|---|
Probab=97.79 E-value=0.00047 Score=59.82 Aligned_cols=126 Identities=16% Similarity=0.186 Sum_probs=74.5
Q ss_pred CCCCCCeEEEecCCCCHHHHHHHHh-C--CEEEEEcCCCcHHHHHHHHHHHHHcCCceEEEEeecCCCCc--CcCCCCCc
Q 026274 67 YRFSGANVVELGAGTSLPGLVAAKV-G--SNVTLTDDSNRIEVLKNMRRVCEMNKLNCRVMGLTWGFLDA--SIFDLNPN 141 (241)
Q Consensus 67 ~~~~~~~VLElGcGtGl~sl~la~~-g--~~V~~tD~~~~~~~l~~~~~n~~~n~~~~~~~~l~w~~~~~--~~~~~~fD 141 (241)
..++..+|||+|||+|....++... + .+++++|.|+ .|++..+.-... ..... ...|..... ...-...|
T Consensus 30 p~f~P~~vLD~GsGpGta~wAa~~~~~~~~~~~~vd~s~--~~~~l~~~l~~~-~~~~~--~~~~~~~~~~~~~~~~~~D 104 (274)
T PF09243_consen 30 PDFRPRSVLDFGSGPGTALWAAREVWPSLKEYTCVDRSP--EMLELAKRLLRA-GPNNR--NAEWRRVLYRDFLPFPPDD 104 (274)
T ss_pred cCCCCceEEEecCChHHHHHHHHHHhcCceeeeeecCCH--HHHHHHHHHHhc-ccccc--cchhhhhhhcccccCCCCc
Confidence 3567789999999999766555543 2 3799999995 688877664432 22111 111211110 11112459
Q ss_pred EEEEcCCcCCCccHHHHHHHHHHHhhcCCCeEEEEEeeccCchhHHHHH---HHHcCCEE
Q 026274 142 IILGADVFYDASAFDDLFATITYLLQSSPGSVFITTYHNRSGHHLIEFL---MVKWGLKC 198 (241)
Q Consensus 142 lIl~~dvly~~~~~~~ll~~~~~lL~~~~~~~~~~~~~~r~~~~~~~~~---~~~~g~~~ 198 (241)
+|+++.++-..+. +...+.+..+-+...+.++++....+.+...+..+ +.+.|+.+
T Consensus 105 Lvi~s~~L~EL~~-~~r~~lv~~LW~~~~~~LVlVEpGt~~Gf~~i~~aR~~l~~~~~~v 163 (274)
T PF09243_consen 105 LVIASYVLNELPS-AARAELVRSLWNKTAPVLVLVEPGTPAGFRRIAEARDQLLEKGAHV 163 (274)
T ss_pred EEEEehhhhcCCc-hHHHHHHHHHHHhccCcEEEEcCCChHHHHHHHHHHHHHhhCCCce
Confidence 9999999988766 55555566553333446777776666665544433 33445444
|
The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. Rsm22 has been identified as a mitochondrial small ribosomal subunit [] and is a methyltransferase. In Schizosaccharomyces pombe (Fission yeast), Rsm22 is tandemly fused to Cox11 (a factor required for copper insertion into cytochrome oxidase) and the two proteins are proteolytically cleaved after import into the mitochondria []. This entry consists of mitochondrial Rsm22 and homologous sequences from bacteria.; GO: 0008168 methyltransferase activity, 0006412 translation |
| >TIGR01444 fkbM_fam methyltransferase, FkbM family | Back alignment and domain information |
|---|
Probab=97.76 E-value=0.00012 Score=56.65 Aligned_cols=56 Identities=20% Similarity=0.274 Sum_probs=46.8
Q ss_pred eEEEecCCCCHHHHHHHHhCC--EEEEEcCCCcHHHHHHHHHHHHHcCC-ceEEEEeecCC
Q 026274 73 NVVELGAGTSLPGLVAAKVGS--NVTLTDDSNRIEVLKNMRRVCEMNKL-NCRVMGLTWGF 130 (241)
Q Consensus 73 ~VLElGcGtGl~sl~la~~g~--~V~~tD~~~~~~~l~~~~~n~~~n~~-~~~~~~l~w~~ 130 (241)
.+||+|||+|..++.+++.+. +|++.|.++ ++.+.+++|++.|+. ++.+....+.+
T Consensus 1 ~vlDiGa~~G~~~~~~~~~~~~~~v~~~E~~~--~~~~~l~~~~~~n~~~~v~~~~~al~~ 59 (143)
T TIGR01444 1 VVIDVGANIGDTSLYFARKGAEGRVIAFEPLP--DAYEILEENVKLNNLPNVVLLNAAVGD 59 (143)
T ss_pred CEEEccCCccHHHHHHHHhCCCCEEEEEecCH--HHHHHHHHHHHHcCCCcEEEEEeeeeC
Confidence 489999999999999999876 699999995 799999999998875 46666665554
|
Members of this family are characterized by two well-conserved short regions separated by a variable in both sequence and length. The first of the two regions is found in a large number of proteins outside this subfamily, a number of which have been characterized as methyltransferases. One member of the present family, FkbM, was shown to be required for a specific methylation in the biosynthesis of the immunosuppressant FK506 in Streptomyces strain MA6548. |
| >PF05148 Methyltransf_8: Hypothetical methyltransferase; InterPro: IPR007823 This family consists of uncharacterised eukaryotic proteins which are related to S-adenosyl-L-methionine-dependent methyltransferases | Back alignment and domain information |
|---|
Probab=97.75 E-value=0.0014 Score=54.29 Aligned_cols=148 Identities=15% Similarity=0.179 Sum_probs=80.1
Q ss_pred EEeccHH--HHHHHHHhccCCCCCCeEEEecCCCCHHHHHHHHhCCEEEEEcCCCcHHHHHHHHHHHHHcCCceEEEEee
Q 026274 50 FVWPCSV--ILAEYVWQQRYRFSGANVVELGAGTSLPGLVAAKVGSNVTLTDDSNRIEVLKNMRRVCEMNKLNCRVMGLT 127 (241)
Q Consensus 50 ~~W~~s~--~L~~~l~~~~~~~~~~~VLElGcGtGl~sl~la~~g~~V~~tD~~~~~~~l~~~~~n~~~n~~~~~~~~l~ 127 (241)
..||..- .+.+||.+. .++..|-|+|||-+.++..+. .+.+|...|+-.. +. .+..-|
T Consensus 53 ~~WP~nPvd~iI~~l~~~---~~~~viaD~GCGdA~la~~~~-~~~~V~SfDLva~--------------n~--~Vtacd 112 (219)
T PF05148_consen 53 KKWPVNPVDVIIEWLKKR---PKSLVIADFGCGDAKLAKAVP-NKHKVHSFDLVAP--------------NP--RVTACD 112 (219)
T ss_dssp CTSSS-HHHHHHHHHCTS----TTS-EEEES-TT-HHHHH---S---EEEEESS-S--------------ST--TEEES-
T ss_pred hcCCCCcHHHHHHHHHhc---CCCEEEEECCCchHHHHHhcc-cCceEEEeeccCC--------------CC--CEEEec
Confidence 3577654 345565532 345689999999998885543 3457999998731 11 234444
Q ss_pred cCCCCcCcCCCCCcEEEEcCCcCCCccHHHHHHHHHHHhhcCCCeEEE-EEeeccCch-hHHHHHHHHcCCEEEEEecCC
Q 026274 128 WGFLDASIFDLNPNIILGADVFYDASAFDDLFATITYLLQSSPGSVFI-TTYHNRSGH-HLIEFLMVKWGLKCVKLVDGF 205 (241)
Q Consensus 128 w~~~~~~~~~~~fDlIl~~dvly~~~~~~~ll~~~~~lL~~~~~~~~~-~~~~~r~~~-~~~~~~~~~~g~~~~~i~~~~ 205 (241)
... -|+.+++.|+++.+=.+-. .+....+....++|+ ++|.++ .....|-.. ..+....++.||++....
T Consensus 113 ia~--vPL~~~svDv~VfcLSLMG-Tn~~~fi~EA~RvLK--~~G~L~IAEV~SRf~~~~~F~~~~~~~GF~~~~~d--- 184 (219)
T PF05148_consen 113 IAN--VPLEDESVDVAVFCLSLMG-TNWPDFIREANRVLK--PGGILKIAEVKSRFENVKQFIKALKKLGFKLKSKD--- 184 (219)
T ss_dssp TTS---S--TT-EEEEEEES---S-S-HHHHHHHHHHHEE--EEEEEEEEEEGGG-S-HHHHHHHHHCTTEEEEEEE---
T ss_pred Ccc--CcCCCCceeEEEEEhhhhC-CCcHHHHHHHHheec--cCcEEEEEEecccCcCHHHHHHHHHHCCCeEEecc---
Confidence 433 2566778999987655554 478899999999999 556554 445555542 233344689999988751
Q ss_pred CCCCcccccccCCCeEEEEEEeccCCCCC
Q 026274 206 SFLPHYKARELNGNIQLAEIVLNHESPEE 234 (241)
Q Consensus 206 ~~~p~~~~~~~~~~~~l~~i~~~~~~~~~ 234 (241)
.......++++.+.....++
T Consensus 185 ---------~~n~~F~~f~F~K~~~~~~~ 204 (219)
T PF05148_consen 185 ---------ESNKHFVLFEFKKIRKKEPK 204 (219)
T ss_dssp -----------STTEEEEEEEE-SSS-TT
T ss_pred ---------cCCCeEEEEEEEEcCccccc
Confidence 23445677777766655443
|
; GO: 0008168 methyltransferase activity; PDB: 2ZFU_B. |
| >PF00398 RrnaAD: Ribosomal RNA adenine dimethylase; InterPro: IPR001737 This family of proteins include rRNA adenine dimethylases (e | Back alignment and domain information |
|---|
Probab=97.74 E-value=0.00041 Score=59.76 Aligned_cols=106 Identities=16% Similarity=0.185 Sum_probs=71.6
Q ss_pred HHHHHHHHHhccCCCCCCeEEEecCCCCHHHHHHHHhCCEEEEEcCCCcHHHHHHHHHHHHHcCCceEEEEeecCCCCcC
Q 026274 55 SVILAEYVWQQRYRFSGANVVELGAGTSLPGLVAAKVGSNVTLTDDSNRIEVLKNMRRVCEMNKLNCRVMGLTWGFLDAS 134 (241)
Q Consensus 55 s~~L~~~l~~~~~~~~~~~VLElGcGtGl~sl~la~~g~~V~~tD~~~~~~~l~~~~~n~~~n~~~~~~~~l~w~~~~~~ 134 (241)
..-+++.+.......++..|||+|+|+|.++..+++.+.+|+++++++ .+.+.+++... ...++++...|.-+....
T Consensus 15 ~~~~~~~Iv~~~~~~~~~~VlEiGpG~G~lT~~L~~~~~~v~~vE~d~--~~~~~L~~~~~-~~~~~~vi~~D~l~~~~~ 91 (262)
T PF00398_consen 15 DPNIADKIVDALDLSEGDTVLEIGPGPGALTRELLKRGKRVIAVEIDP--DLAKHLKERFA-SNPNVEVINGDFLKWDLY 91 (262)
T ss_dssp HHHHHHHHHHHHTCGTTSEEEEESSTTSCCHHHHHHHSSEEEEEESSH--HHHHHHHHHCT-TCSSEEEEES-TTTSCGG
T ss_pred CHHHHHHHHHhcCCCCCCEEEEeCCCCccchhhHhcccCcceeecCcH--hHHHHHHHHhh-hcccceeeecchhccccH
Confidence 344555555555555888999999999999999999999999999995 68888887665 455677777766654332
Q ss_pred c-CCCCCcEEEEcCCcCCCccHHHHHHHHHHHh
Q 026274 135 I-FDLNPNIILGADVFYDASAFDDLFATITYLL 166 (241)
Q Consensus 135 ~-~~~~fDlIl~~dvly~~~~~~~ll~~~~~lL 166 (241)
. .......|+++=+ |+ .-.+++..+...-
T Consensus 92 ~~~~~~~~~vv~NlP-y~--is~~il~~ll~~~ 121 (262)
T PF00398_consen 92 DLLKNQPLLVVGNLP-YN--ISSPILRKLLELY 121 (262)
T ss_dssp GHCSSSEEEEEEEET-GT--GHHHHHHHHHHHG
T ss_pred HhhcCCceEEEEEec-cc--chHHHHHHHhhcc
Confidence 1 1234557777643 43 3345555555443
|
g. KsgA) and the Erythromycin resistance methylases (Erm). The bacterial enzyme KsgA catalyses the transfer of a total of four methyl groups from S-adenosyl-l-methionine (S-AdoMet) to two adjacent adenosine bases in 16S rRNA. This enzyme and the resulting modified adenosine bases appear to be conserved in all species of eubacteria, eukaryotes, and archaea, and in eukaryotic organelles. Bacterial resistance to the aminoglycoside antibiotic kasugamycin involves inactivation of KsgA and resulting loss of the dimethylations, with modest consequences to the overall fitness of the organism. In contrast, the yeast ortholog, Dim1, is essential. In Saccharomyces cerevisiae (Baker's yeast), and presumably in other eukaryotes, the enzyme performs a vital role in pre-rRNA processing in addition to its methylating activity. The best conserved region in these enzymes is located in the N-terminal section and corresponds to a region that is probably involved in S-adenosyl methionine (SAM) binding domain. The crystal structure of KsgA from Escherichia coli has been solved to a resolution of 2.1A. It bears a strong similarity to the crystal structure of ErmC' from Bacillus stearothermophilus and a lesser similarity to the yeast mitochondrial transcription factor, sc-mtTFB []. The Erm family of RNA methyltransferases, which methylate a single adenosine base in 23S rRNA confer resistance to the MLS-B group of antibiotics. Despite their sequence similarity, the two enzyme families have strikingly different levels of regulation that remain to be elucidated. Other orthologs, of this family include the yeast and Homo sapiens (Human) mitochondrial transcription factors (MTF1 and h-mtTFB respectively), which are nuclear encoded []. Human-mtTFB is able to stimulate transcription in vitro independently of its S-adenosylmethionine binding and rRNA methyltransferase activity [].; GO: 0000179 rRNA (adenine-N6,N6-)-dimethyltransferase activity, 0008649 rRNA methyltransferase activity, 0000154 rRNA modification; PDB: 3FTF_A 3R9X_B 3FTE_A 3FTC_A 3FTD_A 3GRY_A 3FYC_A 3GRU_A 3FYD_A 3GRV_A .... |
| >KOG0820 consensus Ribosomal RNA adenine dimethylase [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=97.71 E-value=0.00028 Score=60.40 Aligned_cols=94 Identities=12% Similarity=0.115 Sum_probs=64.5
Q ss_pred CcceEEeccHHHHHHHHHhccCCCCCCeEEEecCCCCHHHHHHHHhCCEEEEEcCCCcHHHHHHHHHHHHHcC--CceEE
Q 026274 46 EYGLFVWPCSVILAEYVWQQRYRFSGANVVELGAGTSLPGLVAAKVGSNVTLTDDSNRIEVLKNMRRVCEMNK--LNCRV 123 (241)
Q Consensus 46 ~~g~~~W~~s~~L~~~l~~~~~~~~~~~VLElGcGtGl~sl~la~~g~~V~~tD~~~~~~~l~~~~~n~~~n~--~~~~~ 123 (241)
+.|.++-.-..++...+. ......+..|||+|-|||.+...+...|++|+++++++ .|+..+.+..+.-. ...++
T Consensus 35 d~GQHilkNp~v~~~I~~-ka~~k~tD~VLEvGPGTGnLT~~lLe~~kkVvA~E~Dp--rmvael~krv~gtp~~~kLqV 111 (315)
T KOG0820|consen 35 DFGQHILKNPLVIDQIVE-KADLKPTDVVLEVGPGTGNLTVKLLEAGKKVVAVEIDP--RMVAELEKRVQGTPKSGKLQV 111 (315)
T ss_pred ccchhhhcCHHHHHHHHh-ccCCCCCCEEEEeCCCCCHHHHHHHHhcCeEEEEecCc--HHHHHHHHHhcCCCccceeeE
Confidence 455555555555544443 33445667899999999999999999999999999997 59988888776433 23455
Q ss_pred EEeecCCCCcCcCCCCCcEEEEc
Q 026274 124 MGLTWGFLDASIFDLNPNIILGA 146 (241)
Q Consensus 124 ~~l~w~~~~~~~~~~~fDlIl~~ 146 (241)
...|.-..+. ..||+++++
T Consensus 112 ~~gD~lK~d~----P~fd~cVsN 130 (315)
T KOG0820|consen 112 LHGDFLKTDL----PRFDGCVSN 130 (315)
T ss_pred EecccccCCC----cccceeecc
Confidence 5555443322 257887753
|
|
| >PRK11933 yebU rRNA (cytosine-C(5)-)-methyltransferase RsmF; Reviewed | Back alignment and domain information |
|---|
Probab=97.71 E-value=0.00077 Score=62.77 Aligned_cols=137 Identities=9% Similarity=0.090 Sum_probs=84.9
Q ss_pred ccHHHHHHHHHhccCCCCCCeEEEecCCCCHHHHHHHHhC---CEEEEEcCCCcHHHHHHHHHHHHHcCCc-eEEEEeec
Q 026274 53 PCSVILAEYVWQQRYRFSGANVVELGAGTSLPGLVAAKVG---SNVTLTDDSNRIEVLKNMRRVCEMNKLN-CRVMGLTW 128 (241)
Q Consensus 53 ~~s~~L~~~l~~~~~~~~~~~VLElGcGtGl~sl~la~~g---~~V~~tD~~~~~~~l~~~~~n~~~n~~~-~~~~~l~w 128 (241)
++|...+..+.. ...+|.+|||++||.|--+..+|... ..|++.|+++ .-++.+++|++.-|+. +.+...|-
T Consensus 98 ~sS~l~~~~L~~--~~~pg~~VLD~CAAPGgKTt~la~~l~~~g~lvA~D~~~--~R~~~L~~nl~r~G~~nv~v~~~D~ 173 (470)
T PRK11933 98 ASSMLPVAALFA--DDNAPQRVLDMAAAPGSKTTQIAALMNNQGAIVANEYSA--SRVKVLHANISRCGVSNVALTHFDG 173 (470)
T ss_pred HHHHHHHHHhcc--CCCCCCEEEEeCCCccHHHHHHHHHcCCCCEEEEEeCCH--HHHHHHHHHHHHcCCCeEEEEeCch
Confidence 344444444432 23467899999999998888888752 3899999996 5889999999988874 34444333
Q ss_pred CCCCcCcCCCCCcEEEE----c--CCcCCCc----------------cHHHHHHHHHHHhhcCCCeEEEEEe--eccCch
Q 026274 129 GFLDASIFDLNPNIILG----A--DVFYDAS----------------AFDDLFATITYLLQSSPGSVFITTY--HNRSGH 184 (241)
Q Consensus 129 ~~~~~~~~~~~fDlIl~----~--dvly~~~----------------~~~~ll~~~~~lL~~~~~~~~~~~~--~~r~~~ 184 (241)
.... ......||.|+. | -++...+ ....+++...++|++ +|.++|.++ ......
T Consensus 174 ~~~~-~~~~~~fD~ILvDaPCSG~G~~rk~p~~~~~~s~~~v~~l~~lQ~~iL~~A~~~Lkp-GG~LVYSTCT~~~eENE 251 (470)
T PRK11933 174 RVFG-AALPETFDAILLDAPCSGEGTVRKDPDALKNWSPESNLEIAATQRELIESAFHALKP-GGTLVYSTCTLNREENQ 251 (470)
T ss_pred hhhh-hhchhhcCeEEEcCCCCCCcccccCHHHhhhCCHHHHHHHHHHHHHHHHHHHHHcCC-CcEEEEECCCCCHHHHH
Confidence 2211 123457999983 2 1121111 236778888888883 334455443 233344
Q ss_pred hHHHHHHHHcC
Q 026274 185 HLIEFLMVKWG 195 (241)
Q Consensus 185 ~~~~~~~~~~g 195 (241)
..+.+++++++
T Consensus 252 ~vV~~~L~~~~ 262 (470)
T PRK11933 252 AVCLWLKETYP 262 (470)
T ss_pred HHHHHHHHHCC
Confidence 55667777764
|
|
| >COG0116 Predicted N6-adenine-specific DNA methylase [DNA replication, recombination, and repair] | Back alignment and domain information |
|---|
Probab=97.70 E-value=0.00082 Score=60.42 Aligned_cols=115 Identities=10% Similarity=0.059 Sum_probs=81.9
Q ss_pred HHHHHHHhccCCCCCCeEEEecCCCCHHHHHHHHhCC-----------------------------------------EE
Q 026274 57 ILAEYVWQQRYRFSGANVVELGAGTSLPGLVAAKVGS-----------------------------------------NV 95 (241)
Q Consensus 57 ~L~~~l~~~~~~~~~~~VLElGcGtGl~sl~la~~g~-----------------------------------------~V 95 (241)
.||.-|.....-..+..++|-=||+|.+.+.+|..+. .+
T Consensus 178 tLAaAil~lagw~~~~pl~DPmCGSGTi~IEAAl~~~niAPg~~R~~~f~~w~~~~~~lw~~~~~ea~~~a~~~~~~~~~ 257 (381)
T COG0116 178 TLAAAILLLAGWKPDEPLLDPMCGSGTILIEAALIAANIAPGLNRRFGFEFWDWFDKDLWDKLREEAEERARRGKELPII 257 (381)
T ss_pred HHHHHHHHHcCCCCCCccccCCCCccHHHHHHHHhccccCCccccccchhhhhhccHHHHHHHHHHHHHHHhhcCccceE
Confidence 3444444444444557899999999999999999875 27
Q ss_pred EEEcCCCcHHHHHHHHHHHHHcCCc--eEEEEeecCCCCcCcCCCCCcEEEEcCCcCC----Cc----cHHHHHHHHHHH
Q 026274 96 TLTDDSNRIEVLKNMRRVCEMNKLN--CRVMGLTWGFLDASIFDLNPNIILGADVFYD----AS----AFDDLFATITYL 165 (241)
Q Consensus 96 ~~tD~~~~~~~l~~~~~n~~~n~~~--~~~~~l~w~~~~~~~~~~~fDlIl~~dvly~----~~----~~~~ll~~~~~l 165 (241)
++.|+++ .+++.++.|++..|+. +.+.+.+..+...+. ..+|+||++.+.=. .. ....+.+++++.
T Consensus 258 ~G~Did~--r~i~~Ak~NA~~AGv~d~I~f~~~d~~~l~~~~--~~~gvvI~NPPYGeRlg~~~~v~~LY~~fg~~lk~~ 333 (381)
T COG0116 258 YGSDIDP--RHIEGAKANARAAGVGDLIEFKQADATDLKEPL--EEYGVVISNPPYGERLGSEALVAKLYREFGRTLKRL 333 (381)
T ss_pred EEecCCH--HHHHHHHHHHHhcCCCceEEEEEcchhhCCCCC--CcCCEEEeCCCcchhcCChhhHHHHHHHHHHHHHHH
Confidence 7999995 6999999999999885 777777777664443 58999998877633 11 344555667677
Q ss_pred hhcCCCeEEEEE
Q 026274 166 LQSSPGSVFITT 177 (241)
Q Consensus 166 L~~~~~~~~~~~ 177 (241)
++ +...++++
T Consensus 334 ~~--~ws~~v~t 343 (381)
T COG0116 334 LA--GWSRYVFT 343 (381)
T ss_pred hc--CCceEEEE
Confidence 65 44444444
|
|
| >KOG1709 consensus Guanidinoacetate methyltransferase and related proteins [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=97.69 E-value=0.00022 Score=59.09 Aligned_cols=104 Identities=19% Similarity=0.223 Sum_probs=81.3
Q ss_pred CCCCeEEEecCCCCHHHHHHHHhCC-EEEEEcCCCcHHHHHHHHHHHHHcCCceEEEEeecCCCCcCcCCCCCcEEEEcC
Q 026274 69 FSGANVVELGAGTSLPGLVAAKVGS-NVTLTDDSNRIEVLKNMRRVCEMNKLNCRVMGLTWGFLDASIFDLNPNIILGAD 147 (241)
Q Consensus 69 ~~~~~VLElGcGtGl~sl~la~~g~-~V~~tD~~~~~~~l~~~~~n~~~n~~~~~~~~l~w~~~~~~~~~~~fDlIl~~d 147 (241)
.+|.+||++|=|.|++.-++..... .=+.++.++ ++++.++++.-...-++.+....|.+....+.+..||=|+ -|
T Consensus 100 tkggrvLnVGFGMgIidT~iQe~~p~~H~IiE~hp--~V~krmr~~gw~ek~nViil~g~WeDvl~~L~d~~FDGI~-yD 176 (271)
T KOG1709|consen 100 TKGGRVLNVGFGMGIIDTFIQEAPPDEHWIIEAHP--DVLKRMRDWGWREKENVIILEGRWEDVLNTLPDKHFDGIY-YD 176 (271)
T ss_pred hCCceEEEeccchHHHHHHHhhcCCcceEEEecCH--HHHHHHHhcccccccceEEEecchHhhhccccccCcceeE-ee
Confidence 5788999999999999888887654 556677774 7999999877666667778888999988888888999987 34
Q ss_pred Cc-CCCccHHHHHHHHHHHhhcCCCeEEEEE
Q 026274 148 VF-YDASAFDDLFATITYLLQSSPGSVFITT 177 (241)
Q Consensus 148 vl-y~~~~~~~ll~~~~~lL~~~~~~~~~~~ 177 (241)
.+ .+-++...+.+-+-+||| |+|++-..
T Consensus 177 Ty~e~yEdl~~~hqh~~rLLk--P~gv~Syf 205 (271)
T KOG1709|consen 177 TYSELYEDLRHFHQHVVRLLK--PEGVFSYF 205 (271)
T ss_pred chhhHHHHHHHHHHHHhhhcC--CCceEEEe
Confidence 44 445677788888999999 55655443
|
|
| >COG4076 Predicted RNA methylase [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.68 E-value=8.4e-05 Score=60.34 Aligned_cols=92 Identities=16% Similarity=0.161 Sum_probs=66.5
Q ss_pred CCeEEEecCCCCHHHHHHHHhCCEEEEEcCCCcHHHHHHHHHHHHHcCC-ceEEEEeecCCCCcCcCCCCCcEEEEc--C
Q 026274 71 GANVVELGAGTSLPGLVAAKVGSNVTLTDDSNRIEVLKNMRRVCEMNKL-NCRVMGLTWGFLDASIFDLNPNIILGA--D 147 (241)
Q Consensus 71 ~~~VLElGcGtGl~sl~la~~g~~V~~tD~~~~~~~l~~~~~n~~~n~~-~~~~~~l~w~~~~~~~~~~~fDlIl~~--d 147 (241)
...+-|||+|+|.+|+.+|+...+|++++.++ .....+.+|+..++. +.++...|..+.. + ++.|+|+|- |
T Consensus 33 ~d~~~DLGaGsGiLs~~Aa~~A~rViAiE~dP--k~a~~a~eN~~v~g~~n~evv~gDA~~y~---f-e~ADvvicEmlD 106 (252)
T COG4076 33 EDTFADLGAGSGILSVVAAHAAERVIAIEKDP--KRARLAEENLHVPGDVNWEVVVGDARDYD---F-ENADVVICEMLD 106 (252)
T ss_pred hhceeeccCCcchHHHHHHhhhceEEEEecCc--HHHHHhhhcCCCCCCcceEEEeccccccc---c-cccceeHHHHhh
Confidence 35799999999999999999966999999997 478899999887775 5666665544331 2 367888753 3
Q ss_pred CcCCCccHHHHHHHHHHHhhc
Q 026274 148 VFYDASAFDDLFATITYLLQS 168 (241)
Q Consensus 148 vly~~~~~~~ll~~~~~lL~~ 168 (241)
+.--.+...+.+..+...|+.
T Consensus 107 TaLi~E~qVpV~n~vleFLr~ 127 (252)
T COG4076 107 TALIEEKQVPVINAVLEFLRY 127 (252)
T ss_pred HHhhcccccHHHHHHHHHhhc
Confidence 333344555666666667763
|
|
| >COG0500 SmtA SAM-dependent methyltransferases [Secondary metabolites biosynthesis, transport, and catabolism / General function prediction only] | Back alignment and domain information |
|---|
Probab=97.67 E-value=0.0016 Score=48.59 Aligned_cols=101 Identities=19% Similarity=0.135 Sum_probs=61.9
Q ss_pred EEEecCCCCHHHHHHHHhC---CEEEEEcCCCcHHHHHHHHHHHHHcCCc-eEEEEeecCCCCcCcCC-CCCcEEEEcCC
Q 026274 74 VVELGAGTSLPGLVAAKVG---SNVTLTDDSNRIEVLKNMRRVCEMNKLN-CRVMGLTWGFLDASIFD-LNPNIILGADV 148 (241)
Q Consensus 74 VLElGcGtGl~sl~la~~g---~~V~~tD~~~~~~~l~~~~~n~~~n~~~-~~~~~l~w~~~~~~~~~-~~fDlIl~~dv 148 (241)
++|+|||+|... .++... ..++++|.++ .++...+......... +.+...++.....+... ..||++.....
T Consensus 52 ~ld~~~g~g~~~-~~~~~~~~~~~~~~~d~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~ 128 (257)
T COG0500 52 VLDIGCGTGRLA-LLARLGGRGAYVVGVDLSP--EMLALARARAEGAGLGLVDFVVADALGGVLPFEDSASFDLVISLLV 128 (257)
T ss_pred eEEecCCcCHHH-HHHHhCCCCceEEEEeCCH--HHHHHHHhhhhhcCCCceEEEEeccccCCCCCCCCCceeEEeeeee
Confidence 999999999876 444443 3789999995 5676644333222221 34555554432122222 37999944444
Q ss_pred cCCCccHHHHHHHHHHHhhcCCCeEEEEEeec
Q 026274 149 FYDASAFDDLFATITYLLQSSPGSVFITTYHN 180 (241)
Q Consensus 149 ly~~~~~~~ll~~~~~lL~~~~~~~~~~~~~~ 180 (241)
.++.. ...++..+.+.++ +++.+++....
T Consensus 129 ~~~~~-~~~~~~~~~~~l~--~~g~~~~~~~~ 157 (257)
T COG0500 129 LHLLP-PAKALRELLRVLK--PGGRLVLSDLL 157 (257)
T ss_pred hhcCC-HHHHHHHHHHhcC--CCcEEEEEecc
Confidence 44444 8889999999998 46666555433
|
|
| >PRK00536 speE spermidine synthase; Provisional | Back alignment and domain information |
|---|
Probab=97.64 E-value=0.00069 Score=58.35 Aligned_cols=94 Identities=13% Similarity=0.039 Sum_probs=67.6
Q ss_pred CCCeEEEecCCCCHHHHHHHHhCCEEEEEcCCCcHHHHHHHHHHH-----HHcCCceEEEEeecCCCCcCcCCCCCcEEE
Q 026274 70 SGANVVELGAGTSLPGLVAAKVGSNVTLTDDSNRIEVLKNMRRVC-----EMNKLNCRVMGLTWGFLDASIFDLNPNIIL 144 (241)
Q Consensus 70 ~~~~VLElGcGtGl~sl~la~~g~~V~~tD~~~~~~~l~~~~~n~-----~~n~~~~~~~~l~w~~~~~~~~~~~fDlIl 144 (241)
+.++||=+|.|-|.....+.+...+|+.+|+++ ++++.+++-. ..++.++++.. |-. ....++||+||
T Consensus 72 ~pk~VLIiGGGDGg~~REvLkh~~~v~mVeID~--~Vv~~~k~~lP~~~~~~~DpRv~l~~--~~~---~~~~~~fDVII 144 (262)
T PRK00536 72 ELKEVLIVDGFDLELAHQLFKYDTHVDFVQADE--KILDSFISFFPHFHEVKNNKNFTHAK--QLL---DLDIKKYDLII 144 (262)
T ss_pred CCCeEEEEcCCchHHHHHHHCcCCeeEEEECCH--HHHHHHHHHCHHHHHhhcCCCEEEee--hhh---hccCCcCCEEE
Confidence 458999999999999999999866999999996 6998888722 22334454443 321 11235899999
Q ss_pred EcCCcCCCccHHHHHHHHHHHhhcCCCeEEEEE
Q 026274 145 GADVFYDASAFDDLFATITYLLQSSPGSVFITT 177 (241)
Q Consensus 145 ~~dvly~~~~~~~ll~~~~~lL~~~~~~~~~~~ 177 (241)
.|..|. +.+.+.+++.|+ ++|+++.-
T Consensus 145 -vDs~~~----~~fy~~~~~~L~--~~Gi~v~Q 170 (262)
T PRK00536 145 -CLQEPD----IHKIDGLKRMLK--EDGVFISV 170 (262)
T ss_pred -EcCCCC----hHHHHHHHHhcC--CCcEEEEC
Confidence 566554 567788999998 67776653
|
|
| >KOG1975 consensus mRNA cap methyltransferase [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=97.63 E-value=0.00026 Score=62.01 Aligned_cols=119 Identities=20% Similarity=0.182 Sum_probs=75.4
Q ss_pred eccHHHHHHHHHhccCCCCCCeEEEecCCCCHHHHHHHHhCC-EEEEEcCCCcHHHHHHHHHHHHHc---CC----ceEE
Q 026274 52 WPCSVILAEYVWQQRYRFSGANVVELGAGTSLPGLVAAKVGS-NVTLTDDSNRIEVLKNMRRVCEMN---KL----NCRV 123 (241)
Q Consensus 52 W~~s~~L~~~l~~~~~~~~~~~VLElGcGtGl~sl~la~~g~-~V~~tD~~~~~~~l~~~~~n~~~n---~~----~~~~ 123 (241)
|--+.++-.|. .++..+++||||-|-=-+---+.|. .++++||.+. .++.+++..+.. .. .+.+
T Consensus 105 wIKs~LI~~y~------~~~~~~~~LgCGKGGDLlKw~kAgI~~~igiDIAev--SI~qa~~RYrdm~~r~~~~~f~a~f 176 (389)
T KOG1975|consen 105 WIKSVLINLYT------KRGDDVLDLGCGKGGDLLKWDKAGIGEYIGIDIAEV--SINQARKRYRDMKNRFKKFIFTAVF 176 (389)
T ss_pred HHHHHHHHHHh------ccccccceeccCCcccHhHhhhhcccceEeeehhhc--cHHHHHHHHHHHHhhhhcccceeEE
Confidence 55555555543 2456799999998844333334455 7999999974 777777654321 11 2344
Q ss_pred EEeecCCCC-c---CcCCCCCcEEEEcCCcCC----CccHHHHHHHHHHHhhcCCCeEEEEEeec
Q 026274 124 MGLTWGFLD-A---SIFDLNPNIILGADVFYD----ASAFDDLFATITYLLQSSPGSVFITTYHN 180 (241)
Q Consensus 124 ~~l~w~~~~-~---~~~~~~fDlIl~~dvly~----~~~~~~ll~~~~~lL~~~~~~~~~~~~~~ 180 (241)
...|-.... . +..+.+||+|=+-=++++ .+...-++..+..+|+ |||+|+-+.+.
T Consensus 177 ~~~Dc~~~~l~d~~e~~dp~fDivScQF~~HYaFetee~ar~~l~Nva~~Lk--pGG~FIgTiPd 239 (389)
T KOG1975|consen 177 IAADCFKERLMDLLEFKDPRFDIVSCQFAFHYAFETEESARIALRNVAKCLK--PGGVFIGTIPD 239 (389)
T ss_pred EEeccchhHHHHhccCCCCCcceeeeeeeEeeeeccHHHHHHHHHHHHhhcC--CCcEEEEecCc
Confidence 443322111 1 112345999977777765 3577888999999998 88888887654
|
|
| >PF08123 DOT1: Histone methylation protein DOT1 ; InterPro: IPR013110 The DOT1 domain regulates gene expression by methylating histone H3 [] | Back alignment and domain information |
|---|
Probab=97.58 E-value=0.00056 Score=56.84 Aligned_cols=123 Identities=15% Similarity=0.114 Sum_probs=58.3
Q ss_pred CCcceEEeccHHHHHHHHHhccCCCCCCeEEEecCCCCHHHHHHHH-hCC-EEEEEcCCCcHHHHHHHHH-------HHH
Q 026274 45 EEYGLFVWPCSVILAEYVWQQRYRFSGANVVELGAGTSLPGLVAAK-VGS-NVTLTDDSNRIEVLKNMRR-------VCE 115 (241)
Q Consensus 45 ~~~g~~~W~~s~~L~~~l~~~~~~~~~~~VLElGcGtGl~sl~la~-~g~-~V~~tD~~~~~~~l~~~~~-------n~~ 115 (241)
..+|=..+..- ++.+ ......++...+|||||.|-+-+.+|. .++ +.+|+++.+ ...+.++. ..+
T Consensus 21 ~~YGEi~~~~~---~~il-~~~~l~~~dvF~DlGSG~G~~v~~aal~~~~~~~~GIEi~~--~~~~~a~~~~~~~~~~~~ 94 (205)
T PF08123_consen 21 ETYGEISPEFV---SKIL-DELNLTPDDVFYDLGSGVGNVVFQAALQTGCKKSVGIEILP--ELHDLAEELLEELKKRMK 94 (205)
T ss_dssp CCGGGCHHHHH---HHHH-HHTT--TT-EEEEES-TTSHHHHHHHHHH--SEEEEEE-SH--HHHHHHHHHHHHHHHHHH
T ss_pred cceeecCHHHH---HHHH-HHhCCCCCCEEEECCCCCCHHHHHHHHHcCCcEEEEEEech--HHHHHHHHHHHHHHHHHH
Confidence 35665544332 2222 223345677899999999977666664 466 599999996 34433332 222
Q ss_pred HcCCceEEEEeecCCCCcCcC----CCCCcEEEEcCCcCCCccHHHHHHHHHHHhhcCCCeEEEE
Q 026274 116 MNKLNCRVMGLTWGFLDASIF----DLNPNIILGADVFYDASAFDDLFATITYLLQSSPGSVFIT 176 (241)
Q Consensus 116 ~n~~~~~~~~l~w~~~~~~~~----~~~fDlIl~~dvly~~~~~~~ll~~~~~lL~~~~~~~~~~ 176 (241)
..+....-..+.-+++..... -...|+|+++...|.++....|.+.+. -|+ +|..|+.
T Consensus 95 ~~g~~~~~v~l~~gdfl~~~~~~~~~s~AdvVf~Nn~~F~~~l~~~L~~~~~-~lk--~G~~IIs 156 (205)
T PF08123_consen 95 HYGKRPGKVELIHGDFLDPDFVKDIWSDADVVFVNNTCFDPDLNLALAELLL-ELK--PGARIIS 156 (205)
T ss_dssp HCTB---EEEEECS-TTTHHHHHHHGHC-SEEEE--TTT-HHHHHHHHHHHT-TS---TT-EEEE
T ss_pred HhhcccccceeeccCccccHhHhhhhcCCCEEEEeccccCHHHHHHHHHHHh-cCC--CCCEEEE
Confidence 333322222232333322110 025799999999998776666644443 333 5666554
|
H3 methylation by DOT1 has been shown to be required for the DNA damage checkpoint in yeast [].; GO: 0018024 histone-lysine N-methyltransferase activity; PDB: 4ER3_A 4ER6_A 4EQZ_A 1NW3_A 3UWP_A 4ER5_A 3QOX_A 3SX0_A 4ER7_A 3SR4_A .... |
| >KOG1661 consensus Protein-L-isoaspartate(D-aspartate) O-methyltransferase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=97.55 E-value=0.001 Score=55.00 Aligned_cols=119 Identities=14% Similarity=0.091 Sum_probs=73.8
Q ss_pred cceEEeccHHHHHHHHHhccC--CCCCCeEEEecCCCCHHHHHHHHh-CC---EEEEEcCCCcHHHHHHHHHHHHHcC--
Q 026274 47 YGLFVWPCSVILAEYVWQQRY--RFSGANVVELGAGTSLPGLVAAKV-GS---NVTLTDDSNRIEVLKNMRRVCEMNK-- 118 (241)
Q Consensus 47 ~g~~~W~~s~~L~~~l~~~~~--~~~~~~VLElGcGtGl~sl~la~~-g~---~V~~tD~~~~~~~l~~~~~n~~~n~-- 118 (241)
.|..+--++..+-.++..... ..+|.+.||+|+|||.++..++++ |+ .++++|.-+ ++++..++|+...-
T Consensus 57 ~G~n~~iSAp~mha~~le~L~~~L~pG~s~LdvGsGSGYLt~~~~~mvg~~g~~~~GIEh~~--eLVe~Sk~nl~k~i~~ 134 (237)
T KOG1661|consen 57 IGYNLTISAPHMHATALEYLDDHLQPGASFLDVGSGSGYLTACFARMVGATGGNVHGIEHIP--ELVEYSKKNLDKDITT 134 (237)
T ss_pred cCCceEEcchHHHHHHHHHHHHhhccCcceeecCCCccHHHHHHHHHhcCCCccccchhhhH--HHHHHHHHHHHhhccC
Confidence 443333455555555554433 568999999999999998888865 44 458999884 79999999887532
Q ss_pred ---------CceEEEEeecCCCCcCcCCCCCcEEEEcCCcCCCccHHHHHHHHHHHhhcCCCeEEEEE
Q 026274 119 ---------LNCRVMGLTWGFLDASIFDLNPNIILGADVFYDASAFDDLFATITYLLQSSPGSVFITT 177 (241)
Q Consensus 119 ---------~~~~~~~l~w~~~~~~~~~~~fDlIl~~dvly~~~~~~~ll~~~~~lL~~~~~~~~~~~ 177 (241)
.+..+...|-..... ...+||.|... .....+.+.+-..|+ ++|.++++
T Consensus 135 ~e~~~~~~~~~l~ivvGDgr~g~~--e~a~YDaIhvG------Aaa~~~pq~l~dqL~--~gGrllip 192 (237)
T KOG1661|consen 135 SESSSKLKRGELSIVVGDGRKGYA--EQAPYDAIHVG------AAASELPQELLDQLK--PGGRLLIP 192 (237)
T ss_pred chhhhhhccCceEEEeCCccccCC--ccCCcceEEEc------cCccccHHHHHHhhc--cCCeEEEe
Confidence 123333333322211 13489998754 344455566666676 44444544
|
|
| >PF07942 N2227: N2227-like protein; InterPro: IPR012901 This family features sequences that are similar to a region of hypothetical yeast gene product N2227 (P53934 from SWISSPROT) | Back alignment and domain information |
|---|
Probab=97.55 E-value=0.0027 Score=54.86 Aligned_cols=123 Identities=23% Similarity=0.222 Sum_probs=76.7
Q ss_pred CCCeEEEecCCCCHHHHHHHHhCCEEEEEcCCCcHHHHHHHHHHHHHcCC----c----------------------eE-
Q 026274 70 SGANVVELGAGTSLPGLVAAKVGSNVTLTDDSNRIEVLKNMRRVCEMNKL----N----------------------CR- 122 (241)
Q Consensus 70 ~~~~VLElGcGtGl~sl~la~~g~~V~~tD~~~~~~~l~~~~~n~~~n~~----~----------------------~~- 122 (241)
...+||==|||.|.++..+|++|..+.+.+.|- -|+ +..|.-+|+. . +.
T Consensus 56 ~~~~VLVPGsGLGRLa~Eia~~G~~~~gnE~S~--~Ml--l~s~fiLn~~~~~~~~~I~Pf~~~~sn~~~~~dqlr~v~i 131 (270)
T PF07942_consen 56 SKIRVLVPGSGLGRLAWEIAKLGYAVQGNEFSY--FML--LASNFILNHCSQPNQFTIYPFVHSFSNQKSREDQLRPVRI 131 (270)
T ss_pred CccEEEEcCCCcchHHHHHhhccceEEEEEchH--HHH--HHHHHHHcccCCCCcEEEecceecccCCCCHHHhCCceEe
Confidence 456899999999999999999999999999994 243 3333333320 0 00
Q ss_pred -------------EEEeecCCCCcCcC----CCCCcEEEEcCCcCC---CccHHHHHHHHHHHhhcCCCeEEE-EE---e
Q 026274 123 -------------VMGLTWGFLDASIF----DLNPNIILGADVFYD---ASAFDDLFATITYLLQSSPGSVFI-TT---Y 178 (241)
Q Consensus 123 -------------~~~l~w~~~~~~~~----~~~fDlIl~~dvly~---~~~~~~ll~~~~~lL~~~~~~~~~-~~---~ 178 (241)
-..+-+|++.+-.. .++||.|+.+ |. ..++-..++++.++|| |||+.+ ++ |
T Consensus 132 PDv~p~~~~~~~~~~sm~aGDF~e~y~~~~~~~~~d~VvT~---FFIDTA~Ni~~Yi~tI~~lLk--pgG~WIN~GPLly 206 (270)
T PF07942_consen 132 PDVDPSSELPSPSNLSMCAGDFLEVYGPDENKGSFDVVVTC---FFIDTAENIIEYIETIEHLLK--PGGYWINFGPLLY 206 (270)
T ss_pred CCcCcccccCCCCceeEecCccEEecCCcccCCcccEEEEE---EEeechHHHHHHHHHHHHHhc--cCCEEEecCCccc
Confidence 01122333322111 2489999987 43 3467778899999998 455443 11 2
Q ss_pred eccC-----------chhHHHHHHHHcCCEEEEE
Q 026274 179 HNRS-----------GHHLIEFLMVKWGLKCVKL 201 (241)
Q Consensus 179 ~~r~-----------~~~~~~~~~~~~g~~~~~i 201 (241)
+... +.+.+..+.++.||+...-
T Consensus 207 h~~~~~~~~~~sveLs~eEi~~l~~~~GF~~~~~ 240 (270)
T PF07942_consen 207 HFEPMSIPNEMSVELSLEEIKELIEKLGFEIEKE 240 (270)
T ss_pred cCCCCCCCCCcccCCCHHHHHHHHHHCCCEEEEE
Confidence 2222 1334556678999998764
|
This is thought to be expressed during meiosis and may be involved in the defence response to stressful conditions []. |
| >PF12147 Methyltransf_20: Putative methyltransferase; InterPro: IPR022744 This C-terminal region is found in bacteria and eukaryotes and is approximately 110 amino acids in length | Back alignment and domain information |
|---|
Probab=97.54 E-value=0.0054 Score=53.28 Aligned_cols=105 Identities=19% Similarity=0.157 Sum_probs=73.4
Q ss_pred CCCeEEEecCCCCHHHHHHH-HhC---CEEEEEcCCCcHHHHHHHHHHHHHcCCc--eEEEEeecCCCCc-CcCCCCCcE
Q 026274 70 SGANVVELGAGTSLPGLVAA-KVG---SNVTLTDDSNRIEVLKNMRRVCEMNKLN--CRVMGLTWGFLDA-SIFDLNPNI 142 (241)
Q Consensus 70 ~~~~VLElGcGtGl~sl~la-~~g---~~V~~tD~~~~~~~l~~~~~n~~~n~~~--~~~~~l~w~~~~~-~~~~~~fDl 142 (241)
+.-+||||-||.|.-=+-+. +.. .+|.+.|+++ ..++.-++-++.+++. +++.+.|..+... .....++++
T Consensus 135 ~pvrIlDIAaG~GRYvlDal~~~~~~~~~i~LrDys~--~Nv~~g~~li~~~gL~~i~~f~~~dAfd~~~l~~l~p~P~l 212 (311)
T PF12147_consen 135 RPVRILDIAAGHGRYVLDALEKHPERPDSILLRDYSP--INVEKGRALIAERGLEDIARFEQGDAFDRDSLAALDPAPTL 212 (311)
T ss_pred CceEEEEeccCCcHHHHHHHHhCCCCCceEEEEeCCH--HHHHHHHHHHHHcCCccceEEEecCCCCHhHhhccCCCCCE
Confidence 45689999999995433333 332 3899999996 5888888888888874 3777777655321 122347899
Q ss_pred EEEcCCcCCCcc---HHHHHHHHHHHhhcCCCeEEEEEe
Q 026274 143 ILGADVFYDASA---FDDLFATITYLLQSSPGSVFITTY 178 (241)
Q Consensus 143 Il~~dvly~~~~---~~~ll~~~~~lL~~~~~~~~~~~~ 178 (241)
++.+-++...++ +...++.+..++. |||.++.+.
T Consensus 213 ~iVsGL~ElF~Dn~lv~~sl~gl~~al~--pgG~lIyTg 249 (311)
T PF12147_consen 213 AIVSGLYELFPDNDLVRRSLAGLARALE--PGGYLIYTG 249 (311)
T ss_pred EEEecchhhCCcHHHHHHHHHHHHHHhC--CCcEEEEcC
Confidence 999998876555 5566777888886 566555543
|
It is found in association with PF00561 from PFAM. Many members are annotated as being lysophospholipases, and others as alpha-beta hydrolase fold-containing proteins. This domain belongs to the S-adenosyl-L-methionine-dependent methyltransferases superfamily. |
| >PRK10742 putative methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=97.52 E-value=0.00077 Score=57.36 Aligned_cols=81 Identities=15% Similarity=0.146 Sum_probs=57.0
Q ss_pred eEEEecCCCCHHHHHHHHhCCEEEEEcCCCcHHHHHHHHHHHHHc------C----CceEEEEeecCCCCcCcCCCCCcE
Q 026274 73 NVVELGAGTSLPGLVAAKVGSNVTLTDDSNRIEVLKNMRRVCEMN------K----LNCRVMGLTWGFLDASIFDLNPNI 142 (241)
Q Consensus 73 ~VLElGcGtGl~sl~la~~g~~V~~tD~~~~~~~l~~~~~n~~~n------~----~~~~~~~l~w~~~~~~~~~~~fDl 142 (241)
+|||+-||+|..|+.++..|++|+++|.++ .+...+++|++.- + -++++...+-.+.... ....||+
T Consensus 91 ~VLD~TAGlG~Da~~las~G~~V~~vEr~p--~vaalL~dgL~ra~~~~~~~~~~~~ri~l~~~da~~~L~~-~~~~fDV 167 (250)
T PRK10742 91 DVVDATAGLGRDAFVLASVGCRVRMLERNP--VVAALLDDGLARGYADAEIGGWLQERLQLIHASSLTALTD-ITPRPQV 167 (250)
T ss_pred EEEECCCCccHHHHHHHHcCCEEEEEECCH--HHHHHHHHHHHHhhhccccchhhhceEEEEeCcHHHHHhh-CCCCCcE
Confidence 899999999999999999999999999996 5777888887652 1 1244444443333222 2237999
Q ss_pred EEEcCCcCCCccHHH
Q 026274 143 ILGADVFYDASAFDD 157 (241)
Q Consensus 143 Il~~dvly~~~~~~~ 157 (241)
|+ .|+.|-...-..
T Consensus 168 VY-lDPMfp~~~ksa 181 (250)
T PRK10742 168 VY-LDPMFPHKQKSA 181 (250)
T ss_pred EE-ECCCCCCCcccc
Confidence 99 566665544333
|
|
| >KOG1501 consensus Arginine N-methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.51 E-value=0.00025 Score=64.39 Aligned_cols=96 Identities=18% Similarity=0.240 Sum_probs=61.9
Q ss_pred eEEEecCCCCHHHHHHHHhCC-EEEEEcCCCcHHHHHHHHHHHHHcCCceEEEEeecCCCCcCcC-CCCCcEEEEcCCcC
Q 026274 73 NVVELGAGTSLPGLVAAKVGS-NVTLTDDSNRIEVLKNMRRVCEMNKLNCRVMGLTWGFLDASIF-DLNPNIILGADVFY 150 (241)
Q Consensus 73 ~VLElGcGtGl~sl~la~~g~-~V~~tD~~~~~~~l~~~~~n~~~n~~~~~~~~l~w~~~~~~~~-~~~fDlIl~~dvly 150 (241)
-|||+|+|||++|+++++.|+ +|++.+.-. -|.+.+++....|+....+....-...+-... ....|+++..+..-
T Consensus 69 ~vLdigtGTGLLSmMAvragaD~vtA~Evfk--PM~d~arkI~~kng~SdkI~vInkrStev~vg~~~RadI~v~e~fdt 146 (636)
T KOG1501|consen 69 FVLDIGTGTGLLSMMAVRAGADSVTACEVFK--PMVDLARKIMHKNGMSDKINVINKRSTEVKVGGSSRADIAVREDFDT 146 (636)
T ss_pred EEEEccCCccHHHHHHHHhcCCeEEeehhhc--hHHHHHHHHHhcCCCccceeeeccccceeeecCcchhhhhhHhhhhh
Confidence 489999999999999999998 899999986 39999999999998643332221111100000 12466666554432
Q ss_pred C---CccHHHHHHHHHHHhhcCC
Q 026274 151 D---ASAFDDLFATITYLLQSSP 170 (241)
Q Consensus 151 ~---~~~~~~ll~~~~~lL~~~~ 170 (241)
. ...++.+-.....|+.++.
T Consensus 147 EligeGalps~qhAh~~L~~~nc 169 (636)
T KOG1501|consen 147 ELIGEGALPSLQHAHDMLLVDNC 169 (636)
T ss_pred hhhccccchhHHHHHHHhcccCC
Confidence 2 2345555555666666543
|
|
| >PF13679 Methyltransf_32: Methyltransferase domain | Back alignment and domain information |
|---|
Probab=97.50 E-value=0.0005 Score=53.56 Aligned_cols=48 Identities=17% Similarity=0.158 Sum_probs=38.9
Q ss_pred CCCCeEEEecCCCCHHHHHHHH-----h-CCEEEEEcCCCcHHHHHHHHHHHHHcC
Q 026274 69 FSGANVVELGAGTSLPGLVAAK-----V-GSNVTLTDDSNRIEVLKNMRRVCEMNK 118 (241)
Q Consensus 69 ~~~~~VLElGcGtGl~sl~la~-----~-g~~V~~tD~~~~~~~l~~~~~n~~~n~ 118 (241)
.+...|+|+|||-|.+|..++. . +.+|+++|.++ ..++.+++..+..+
T Consensus 24 ~~~~~vvD~GsG~GyLs~~La~~l~~~~~~~~v~~iD~~~--~~~~~a~~~~~~~~ 77 (141)
T PF13679_consen 24 KRCITVVDLGSGKGYLSRALAHLLCNSSPNLRVLGIDCNE--SLVESAQKRAQKLG 77 (141)
T ss_pred CCCCEEEEeCCChhHHHHHHHHHHHhcCCCCeEEEEECCc--HHHHHHHHHHHHhc
Confidence 4567899999999999999999 3 55999999996 47777776665544
|
|
| >PRK01544 bifunctional N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase/tRNA (m7G46) methyltransferase; Reviewed | Back alignment and domain information |
|---|
Probab=97.44 E-value=0.0013 Score=61.85 Aligned_cols=126 Identities=9% Similarity=0.007 Sum_probs=77.3
Q ss_pred CCCeEEEecCCCCHHHHHHHHhCC--EEEEEcCCCcHHHHHHHHHHHHHcCC-ceEEEEeecCCCCcCcCCCCCcEEEE-
Q 026274 70 SGANVVELGAGTSLPGLVAAKVGS--NVTLTDDSNRIEVLKNMRRVCEMNKL-NCRVMGLTWGFLDASIFDLNPNIILG- 145 (241)
Q Consensus 70 ~~~~VLElGcGtGl~sl~la~~g~--~V~~tD~~~~~~~l~~~~~n~~~n~~-~~~~~~l~w~~~~~~~~~~~fDlIl~- 145 (241)
.+..+||||||.|-..+.+|+... .++|+|+.. ..+..+.+.+...++ ++.+...++........+.++|-|..
T Consensus 347 ~~p~~lEIG~G~G~~~~~~A~~~p~~~~iGiE~~~--~~~~~~~~~~~~~~l~N~~~~~~~~~~~~~~~~~~sv~~i~i~ 424 (506)
T PRK01544 347 KRKVFLEIGFGMGEHFINQAKMNPDALFIGVEVYL--NGVANVLKLAGEQNITNFLLFPNNLDLILNDLPNNSLDGIYIL 424 (506)
T ss_pred CCceEEEECCCchHHHHHHHHhCCCCCEEEEEeeH--HHHHHHHHHHHHcCCCeEEEEcCCHHHHHHhcCcccccEEEEE
Confidence 356799999999988888888754 799999996 355444444555554 45555444332222233456777654
Q ss_pred -cCCcCCCc------cHHHHHHHHHHHhhcCCCeEEEEEeeccCchhHHHHHHHHc-CCEEE
Q 026274 146 -ADVFYDAS------AFDDLFATITYLLQSSPGSVFITTYHNRSGHHLIEFLMVKW-GLKCV 199 (241)
Q Consensus 146 -~dvly~~~------~~~~ll~~~~~lL~~~~~~~~~~~~~~r~~~~~~~~~~~~~-g~~~~ 199 (241)
.|+.+... .-+.+++.+.++|+ +||.+.+................+. +|+..
T Consensus 425 FPDPWpKkrh~krRl~~~~fl~~~~~~Lk--~gG~i~~~TD~~~y~~~~~~~~~~~~~f~~~ 484 (506)
T PRK01544 425 FPDPWIKNKQKKKRIFNKERLKILQDKLK--DNGNLVFASDIENYFYEAIELIQQNGNFEII 484 (506)
T ss_pred CCCCCCCCCCccccccCHHHHHHHHHhcC--CCCEEEEEcCCHHHHHHHHHHHHhCCCeEec
Confidence 45554322 46788999999998 6677766654433332222223334 36543
|
|
| >PF11968 DUF3321: Putative methyltransferase (DUF3321); InterPro: IPR021867 This family is conserved in fungi and is annotated as being a nucleolar protein | Back alignment and domain information |
|---|
Probab=97.43 E-value=0.0049 Score=51.33 Aligned_cols=132 Identities=14% Similarity=0.073 Sum_probs=86.1
Q ss_pred eccHHHHHHHHHhccCCCC----CCeEEEecCCCCHHHHHHHHhCC-EEEEEcCCCcHHHHHHHHHHHHHcCCceEEEEe
Q 026274 52 WPCSVILAEYVWQQRYRFS----GANVVELGAGTSLPGLVAAKVGS-NVTLTDDSNRIEVLKNMRRVCEMNKLNCRVMGL 126 (241)
Q Consensus 52 W~~s~~L~~~l~~~~~~~~----~~~VLElGcGtGl~sl~la~~g~-~V~~tD~~~~~~~l~~~~~n~~~n~~~~~~~~l 126 (241)
-+++..|.+||.......+ ..++||+||=+.-.. ++..+. .|+.+|+++. . -.+.+.
T Consensus 29 GdSSK~lv~wL~~~~~~~~~~~~~lrlLEVGals~~N~--~s~~~~fdvt~IDLns~--------------~--~~I~qq 90 (219)
T PF11968_consen 29 GDSSKWLVEWLKELGVRPKNGRPKLRLLEVGALSTDNA--CSTSGWFDVTRIDLNSQ--------------H--PGILQQ 90 (219)
T ss_pred CchhHHHHHHhhhhccccccccccceEEeecccCCCCc--ccccCceeeEEeecCCC--------------C--CCceee
Confidence 4789999999987643332 258999999744322 223333 7999999962 1 133456
Q ss_pred ecCCCCcC-cCCCCCcEEEEcCCcCCCcc---HHHHHHHHHHHhhcCCC-----eEEEEEe----eccCc-hhHHHHHHH
Q 026274 127 TWGFLDAS-IFDLNPNIILGADVFYDASA---FDDLFATITYLLQSSPG-----SVFITTY----HNRSG-HHLIEFLMV 192 (241)
Q Consensus 127 ~w~~~~~~-~~~~~fDlIl~~dvly~~~~---~~~ll~~~~~lL~~~~~-----~~~~~~~----~~r~~-~~~~~~~~~ 192 (241)
|+-+...+ ...++||+|.+|=|+-+.++ --..++.+.++|++++. ..++++. ..|+. .+.+..+++
T Consensus 91 DFm~rplp~~~~e~FdvIs~SLVLNfVP~p~~RG~Ml~r~~~fL~~~g~~~~~~LFlVlP~~Cv~NSRy~~~~~l~~im~ 170 (219)
T PF11968_consen 91 DFMERPLPKNESEKFDVISLSLVLNFVPDPKQRGEMLRRAHKFLKPPGLSLFPSLFLVLPLPCVTNSRYMTEERLREIME 170 (219)
T ss_pred ccccCCCCCCcccceeEEEEEEEEeeCCCHHHHHHHHHHHHHHhCCCCccCcceEEEEeCchHhhcccccCHHHHHHHHH
Confidence 66554322 23468999999999977554 44678888899986554 3333332 22333 345567889
Q ss_pred HcCCEEEEE
Q 026274 193 KWGLKCVKL 201 (241)
Q Consensus 193 ~~g~~~~~i 201 (241)
..||.....
T Consensus 171 ~LGf~~~~~ 179 (219)
T PF11968_consen 171 SLGFTRVKY 179 (219)
T ss_pred hCCcEEEEE
Confidence 999998875
|
|
| >PRK00050 16S rRNA m(4)C1402 methyltranserfase; Provisional | Back alignment and domain information |
|---|
Probab=97.41 E-value=0.00047 Score=60.38 Aligned_cols=58 Identities=5% Similarity=-0.093 Sum_probs=44.2
Q ss_pred CCCCeEEEecCCCCHHHHHHHHhC---CEEEEEcCCCcHHHHHHHHHHHHHcCCceEEEEeecC
Q 026274 69 FSGANVVELGAGTSLPGLVAAKVG---SNVTLTDDSNRIEVLKNMRRVCEMNKLNCRVMGLTWG 129 (241)
Q Consensus 69 ~~~~~VLElGcGtGl~sl~la~~g---~~V~~tD~~~~~~~l~~~~~n~~~n~~~~~~~~l~w~ 129 (241)
.++..+||.+||.|--+..+++.. .+|++.|.++ +|++.++++... ..++.+...+..
T Consensus 18 ~pg~~vlD~TlG~GGhS~~il~~~~~~g~VigiD~D~--~al~~ak~~L~~-~~ri~~i~~~f~ 78 (296)
T PRK00050 18 KPDGIYVDGTFGGGGHSRAILERLGPKGRLIAIDRDP--DAIAAAKDRLKP-FGRFTLVHGNFS 78 (296)
T ss_pred CCCCEEEEeCcCChHHHHHHHHhCCCCCEEEEEcCCH--HHHHHHHHhhcc-CCcEEEEeCCHH
Confidence 456799999999999999999873 5899999995 799999877654 334555444443
|
|
| >PF01564 Spermine_synth: Spermine/spermidine synthase; InterPro: IPR001045 Synonym(s): Spermidine aminopropyltransferase A group of polyamine biosynthetic enzymes involved in the fifth (last) step in the biosynthesis of spermidine from arginine and methionine which includes; spermidine synthase (2 | Back alignment and domain information |
|---|
Probab=97.39 E-value=0.0016 Score=55.61 Aligned_cols=105 Identities=14% Similarity=0.108 Sum_probs=69.5
Q ss_pred CCCeEEEecCCCCHHHHHHHHhC--CEEEEEcCCCcHHHHHHHHHHHHH-----cCCceEEEEeecCCCCcCcCCCCCcE
Q 026274 70 SGANVVELGAGTSLPGLVAAKVG--SNVTLTDDSNRIEVLKNMRRVCEM-----NKLNCRVMGLTWGFLDASIFDLNPNI 142 (241)
Q Consensus 70 ~~~~VLElGcGtGl~sl~la~~g--~~V~~tD~~~~~~~l~~~~~n~~~-----n~~~~~~~~l~w~~~~~~~~~~~fDl 142 (241)
+.++||-||-|.|...-.+.+.. .+|+++|+++ ++++.+++-... ++.++++...|-..........+||+
T Consensus 76 ~p~~VLiiGgG~G~~~~ell~~~~~~~i~~VEiD~--~Vv~~a~~~f~~~~~~~~d~r~~i~~~Dg~~~l~~~~~~~yDv 153 (246)
T PF01564_consen 76 NPKRVLIIGGGDGGTARELLKHPPVESITVVEIDP--EVVELARKYFPEFSEGLDDPRVRIIIGDGRKFLKETQEEKYDV 153 (246)
T ss_dssp ST-EEEEEESTTSHHHHHHTTSTT-SEEEEEES-H--HHHHHHHHHTHHHHTTGGSTTEEEEESTHHHHHHTSSST-EEE
T ss_pred CcCceEEEcCCChhhhhhhhhcCCcceEEEEecCh--HHHHHHHHhchhhccccCCCceEEEEhhhHHHHHhccCCcccE
Confidence 57899999999998888888865 4899999995 699988875443 23456666544433322222228999
Q ss_pred EEE--cCCcCCCc--cHHHHHHHHHHHhhcCCCeEEEEEe
Q 026274 143 ILG--ADVFYDAS--AFDDLFATITYLLQSSPGSVFITTY 178 (241)
Q Consensus 143 Il~--~dvly~~~--~~~~ll~~~~~lL~~~~~~~~~~~~ 178 (241)
|+. .|...... .-..+++.+++.|+ ++|++++-.
T Consensus 154 Ii~D~~dp~~~~~~l~t~ef~~~~~~~L~--~~Gv~v~~~ 191 (246)
T PF01564_consen 154 IIVDLTDPDGPAPNLFTREFYQLCKRRLK--PDGVLVLQA 191 (246)
T ss_dssp EEEESSSTTSCGGGGSSHHHHHHHHHHEE--EEEEEEEEE
T ss_pred EEEeCCCCCCCcccccCHHHHHHHHhhcC--CCcEEEEEc
Confidence 995 33222111 24688999999998 677766554
|
5.1.16 from EC), spermine synthase (2.5.1.22 from EC) and putrescine N-methyltransferase (2.1.1.53 from EC) []. The Thermotoga maritima spermidine synthase monomer consists of two domains: an N-terminal domain composed of six beta-strands, and a Rossmann-like C- terminal domain []. The larger C-terminal catalytic core domain consists of a seven-stranded beta-sheet flanked by nine alpha helices. This domain resembles a topology observed in a number of nucleotide and dinucleotide-binding enzymes, and in S-adenosyl-L-methionine (AdoMet)- dependent methyltransferase (MTases) [].; GO: 0003824 catalytic activity; PDB: 2E5W_C 2ZSU_E 2O0L_B 2O05_B 2O06_B 2O07_B 3RW9_B 2PWP_A 2HTE_B 3RIE_B .... |
| >COG0293 FtsJ 23S rRNA methylase [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=97.39 E-value=0.021 Score=47.24 Aligned_cols=151 Identities=17% Similarity=0.127 Sum_probs=88.2
Q ss_pred ccHHHHHHHHHhccCCCCCCeEEEecCCCCHHHHHHHHhC-C--EEEEEcCCCcHHHHHHHHHHHHHcCCceEEEEeecC
Q 026274 53 PCSVILAEYVWQQRYRFSGANVVELGAGTSLPGLVAAKVG-S--NVTLTDDSNRIEVLKNMRRVCEMNKLNCRVMGLTWG 129 (241)
Q Consensus 53 ~~s~~L~~~l~~~~~~~~~~~VLElGcGtGl~sl~la~~g-~--~V~~tD~~~~~~~l~~~~~n~~~n~~~~~~~~l~w~ 129 (241)
.+++.|.+...++.-..++.+|+||||-.|-++..++++. . .|+++|+.|- +.+ ..+.+.+.|..
T Consensus 28 RAa~KL~el~~k~~i~~~~~~ViDLGAAPGgWsQva~~~~~~~~~ivavDi~p~-~~~-----------~~V~~iq~d~~ 95 (205)
T COG0293 28 RAAYKLLELNEKFKLFKPGMVVVDLGAAPGGWSQVAAKKLGAGGKIVAVDILPM-KPI-----------PGVIFLQGDIT 95 (205)
T ss_pred hHHHHHHHHHHhcCeecCCCEEEEcCCCCCcHHHHHHHHhCCCCcEEEEECccc-ccC-----------CCceEEeeecc
Confidence 5677787777777444567899999999999999999873 3 4999999972 111 12566667666
Q ss_pred CCCc------CcCCCCCcEEEEcCCcCCC------------ccHHHHHHHHHHHhhcCCCeEEEEE-eeccCchhHHHHH
Q 026274 130 FLDA------SIFDLNPNIILGADVFYDA------------SAFDDLFATITYLLQSSPGSVFITT-YHNRSGHHLIEFL 190 (241)
Q Consensus 130 ~~~~------~~~~~~fDlIl~~dvly~~------------~~~~~ll~~~~~lL~~~~~~~~~~~-~~~r~~~~~~~~~ 190 (241)
+... .....++|+|++ |.--+. .....+++.....|+ ++|.|++- ++.......+..+
T Consensus 96 ~~~~~~~l~~~l~~~~~DvV~s-D~ap~~~g~~~~Dh~r~~~L~~~a~~~a~~vL~--~~G~fv~K~fqg~~~~~~l~~~ 172 (205)
T COG0293 96 DEDTLEKLLEALGGAPVDVVLS-DMAPNTSGNRSVDHARSMYLCELALEFALEVLK--PGGSFVAKVFQGEDFEDLLKAL 172 (205)
T ss_pred CccHHHHHHHHcCCCCcceEEe-cCCCCcCCCccccHHHHHHHHHHHHHHHHHeeC--CCCeEEEEEEeCCCHHHHHHHH
Confidence 5431 111234699882 322211 234455566667776 55555554 4444444444444
Q ss_pred HHHcCCEEEEEecCCCCCCccccc-ccCCCeEEEEEEecc
Q 026274 191 MVKWGLKCVKLVDGFSFLPHYKAR-ELNGNIQLAEIVLNH 229 (241)
Q Consensus 191 ~~~~g~~~~~i~~~~~~~p~~~~~-~~~~~~~l~~i~~~~ 229 (241)
.+ .|....+. ++. ..+...|++-+-+..
T Consensus 173 ~~--~F~~v~~~---------KP~aSR~~S~E~y~v~~~~ 201 (205)
T COG0293 173 RR--LFRKVKIF---------KPKASRKRSREIYLVAKGF 201 (205)
T ss_pred HH--hhceeEEe---------cCccccCCCceEEEEEecc
Confidence 33 34444331 112 233445777776554
|
|
| >KOG2915 consensus tRNA(1-methyladenosine) methyltransferase, subunit GCD14 [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=97.34 E-value=0.0085 Score=51.51 Aligned_cols=128 Identities=13% Similarity=0.054 Sum_probs=77.8
Q ss_pred cCCCCCCeEEEecCCCCHHHHHHHHhC---CEEEEEcCCCcHHHHHHHHHHHHHcCC--ceEEEEeecCCCCcCcCCCCC
Q 026274 66 RYRFSGANVVELGAGTSLPGLVAAKVG---SNVTLTDDSNRIEVLKNMRRVCEMNKL--NCRVMGLTWGFLDASIFDLNP 140 (241)
Q Consensus 66 ~~~~~~~~VLElGcGtGl~sl~la~~g---~~V~~tD~~~~~~~l~~~~~n~~~n~~--~~~~~~l~w~~~~~~~~~~~f 140 (241)
.+...|.+|||-|.|+|-+|.++++.- .++.-.|+.+ .-.+.+++-.+..++ ++++..-|............+
T Consensus 101 L~i~PGsvV~EsGTGSGSlShaiaraV~ptGhl~tfefH~--~Ra~ka~eeFr~hgi~~~vt~~hrDVc~~GF~~ks~~a 178 (314)
T KOG2915|consen 101 LEIRPGSVVLESGTGSGSLSHAIARAVAPTGHLYTFEFHE--TRAEKALEEFREHGIGDNVTVTHRDVCGSGFLIKSLKA 178 (314)
T ss_pred hcCCCCCEEEecCCCcchHHHHHHHhhCcCcceEEEEecH--HHHHHHHHHHHHhCCCcceEEEEeecccCCcccccccc
Confidence 345678999999999999999999963 2799999985 355666666777765 455555554433222223466
Q ss_pred cEEEEcCCcCCCccHHHHHHHHHHHhhcCCCeEEEEEeeccCchhHHH---HHHHHcCCEEEEEecC
Q 026274 141 NIILGADVFYDASAFDDLFATITYLLQSSPGSVFITTYHNRSGHHLIE---FLMVKWGLKCVKLVDG 204 (241)
Q Consensus 141 DlIl~~dvly~~~~~~~ll~~~~~lL~~~~~~~~~~~~~~r~~~~~~~---~~~~~~g~~~~~i~~~ 204 (241)
|.|+. +.+.+-..+.-+..+|+..++ .++++.+ .-+..+ ..+.+.||.-..+.+.
T Consensus 179 DaVFL-----DlPaPw~AiPha~~~lk~~g~--r~csFSP--CIEQvqrtce~l~~~gf~~i~~vEv 236 (314)
T KOG2915|consen 179 DAVFL-----DLPAPWEAIPHAAKILKDEGG--RLCSFSP--CIEQVQRTCEALRSLGFIEIETVEV 236 (314)
T ss_pred ceEEE-----cCCChhhhhhhhHHHhhhcCc--eEEeccH--HHHHHHHHHHHHHhCCCceEEEEEe
Confidence 66664 344444455555557774433 3333321 111111 2356789877666443
|
|
| >PHA01634 hypothetical protein | Back alignment and domain information |
|---|
Probab=97.32 E-value=0.0012 Score=50.41 Aligned_cols=70 Identities=17% Similarity=0.192 Sum_probs=54.9
Q ss_pred CCCCCeEEEecCCCCHHHHHHHHhCC-EEEEEcCCCcHHHHHHHHHHHHHcCCceE-EEEeecCCCCcCcCCCCCcEEE
Q 026274 68 RFSGANVVELGAGTSLPGLVAAKVGS-NVTLTDDSNRIEVLKNMRRVCEMNKLNCR-VMGLTWGFLDASIFDLNPNIIL 144 (241)
Q Consensus 68 ~~~~~~VLElGcGtGl~sl~la~~g~-~V~~tD~~~~~~~l~~~~~n~~~n~~~~~-~~~l~w~~~~~~~~~~~fDlIl 144 (241)
.+++++|+|+|++.|--+++++..|| .|++.+.++ .+.+..++|++.|.+-.. +....|... -++||+..
T Consensus 26 dvk~KtV~dIGA~iGdSaiYF~l~GAK~Vva~E~~~--kl~k~~een~k~nnI~DK~v~~~eW~~~-----Y~~~Di~~ 97 (156)
T PHA01634 26 NVYQRTIQIVGADCGSSALYFLLRGASFVVQYEKEE--KLRKKWEEVCAYFNICDKAVMKGEWNGE-----YEDVDIFV 97 (156)
T ss_pred eecCCEEEEecCCccchhhHHhhcCccEEEEeccCH--HHHHHHHHHhhhheeeeceeeccccccc-----CCCcceEE
Confidence 46899999999999999999999999 799999996 588899999998876432 233467541 23677654
|
|
| >PF04816 DUF633: Family of unknown function (DUF633) ; InterPro: IPR006901 This is a family of uncharacterised bacterial proteins | Back alignment and domain information |
|---|
Probab=97.31 E-value=0.0026 Score=52.87 Aligned_cols=116 Identities=13% Similarity=0.037 Sum_probs=68.1
Q ss_pred EEEecCCCCHHHHHHHHhCC--EEEEEcCCCcHHHHHHHHHHHHHcCCc--eEEEEeecCCCCcCcCCC-CCcEEEEcCC
Q 026274 74 VVELGAGTSLPGLVAAKVGS--NVTLTDDSNRIEVLKNMRRVCEMNKLN--CRVMGLTWGFLDASIFDL-NPNIILGADV 148 (241)
Q Consensus 74 VLElGcGtGl~sl~la~~g~--~V~~tD~~~~~~~l~~~~~n~~~n~~~--~~~~~l~w~~~~~~~~~~-~fDlIl~~dv 148 (241)
|.|+||-=|.++++|.+.|. +++++|+++ .-++.+++|+..+++. +.++. ++....+... ..|+|+.+-+
T Consensus 1 vaDIGtDHgyLpi~L~~~~~~~~~ia~DI~~--gpL~~A~~~i~~~~l~~~i~~rl---gdGL~~l~~~e~~d~ivIAGM 75 (205)
T PF04816_consen 1 VADIGTDHGYLPIYLLKNGKAPKAIAVDINP--GPLEKAKENIAKYGLEDRIEVRL---GDGLEVLKPGEDVDTIVIAGM 75 (205)
T ss_dssp EEEET-STTHHHHHHHHTTSEEEEEEEESSH--HHHHHHHHHHHHTT-TTTEEEEE----SGGGG--GGG---EEEEEEE
T ss_pred CceeccchhHHHHHHHhcCCCCEEEEEeCCH--HHHHHHHHHHHHcCCcccEEEEE---CCcccccCCCCCCCEEEEecC
Confidence 68999999999999999987 799999995 6999999999998864 44333 3333333332 3677764422
Q ss_pred cCCCccHHHHHHHHHHHhhcCCCeEEEEEeeccCchhHHHHHHHHcCCEEEE
Q 026274 149 FYDASAFDDLFATITYLLQSSPGSVFITTYHNRSGHHLIEFLMVKWGLKCVK 200 (241)
Q Consensus 149 ly~~~~~~~ll~~~~~lL~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~ 200 (241)
=- ..+..+++.....++ +...+++.. .. ....++..+.++||....
T Consensus 76 GG--~lI~~ILe~~~~~~~--~~~~lILqP-~~-~~~~LR~~L~~~gf~I~~ 121 (205)
T PF04816_consen 76 GG--ELIIEILEAGPEKLS--SAKRLILQP-NT-HAYELRRWLYENGFEIID 121 (205)
T ss_dssp -H--HHHHHHHHHTGGGGT--T--EEEEEE-SS--HHHHHHHHHHTTEEEEE
T ss_pred CH--HHHHHHHHhhHHHhc--cCCeEEEeC-CC-ChHHHHHHHHHCCCEEEE
Confidence 11 133344444433332 223455542 22 334455666788988765
|
; GO: 0016429 tRNA (adenine-N1-)-methyltransferase activity; PDB: 3LEC_A 3KU1_G 3KR9_A 3GNL_B. |
| >KOG3045 consensus Predicted RNA methylase involved in rRNA processing [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=97.30 E-value=0.0057 Score=52.23 Aligned_cols=108 Identities=14% Similarity=0.160 Sum_probs=71.9
Q ss_pred CCCeEEEecCCCCHHHHHHHHhCCEEEEEcCCCcHHHHHHHHHHHHHcCCceEEEEeecCCCCcCcCCCCCcEEEEcCCc
Q 026274 70 SGANVVELGAGTSLPGLVAAKVGSNVTLTDDSNRIEVLKNMRRVCEMNKLNCRVMGLTWGFLDASIFDLNPNIILGADVF 149 (241)
Q Consensus 70 ~~~~VLElGcGtGl~sl~la~~g~~V~~tD~~~~~~~l~~~~~n~~~n~~~~~~~~l~w~~~~~~~~~~~fDlIl~~dvl 149 (241)
....|-|+|||-+-++. +...+|...|+-.. +-++...|..+ -++.+++.|+++.+=.+
T Consensus 180 ~~~vIaD~GCGEakiA~---~~~~kV~SfDL~a~----------------~~~V~~cDm~~--vPl~d~svDvaV~CLSL 238 (325)
T KOG3045|consen 180 KNIVIADFGCGEAKIAS---SERHKVHSFDLVAV----------------NERVIACDMRN--VPLEDESVDVAVFCLSL 238 (325)
T ss_pred CceEEEecccchhhhhh---ccccceeeeeeecC----------------CCceeeccccC--CcCccCcccEEEeeHhh
Confidence 44579999999986554 44457888888741 22344445544 35667899999876544
Q ss_pred CCCccHHHHHHHHHHHhhcCCCeEEEEE-eeccCch-hHHHHHHHHcCCEEEEE
Q 026274 150 YDASAFDDLFATITYLLQSSPGSVFITT-YHNRSGH-HLIEFLMVKWGLKCVKL 201 (241)
Q Consensus 150 y~~~~~~~ll~~~~~lL~~~~~~~~~~~-~~~r~~~-~~~~~~~~~~g~~~~~i 201 (241)
.- .++..+++...++|+ +||.++++ ...|... ..+.......||.+.+.
T Consensus 239 Mg-tn~~df~kEa~RiLk--~gG~l~IAEv~SRf~dv~~f~r~l~~lGF~~~~~ 289 (325)
T KOG3045|consen 239 MG-TNLADFIKEANRILK--PGGLLYIAEVKSRFSDVKGFVRALTKLGFDVKHK 289 (325)
T ss_pred hc-ccHHHHHHHHHHHhc--cCceEEEEehhhhcccHHHHHHHHHHcCCeeeeh
Confidence 43 578899999999998 56666655 4444332 12333457889998876
|
|
| >COG0421 SpeE Spermidine synthase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=97.22 E-value=0.0032 Score=54.87 Aligned_cols=100 Identities=11% Similarity=0.086 Sum_probs=68.3
Q ss_pred CeEEEecCCCCHHHHHHHHhC--CEEEEEcCCCcHHHHHHHHHHHHHc-----CCceEEEEeecCCCCcCcCCCCCcEEE
Q 026274 72 ANVVELGAGTSLPGLVAAKVG--SNVTLTDDSNRIEVLKNMRRVCEMN-----KLNCRVMGLTWGFLDASIFDLNPNIIL 144 (241)
Q Consensus 72 ~~VLElGcGtGl~sl~la~~g--~~V~~tD~~~~~~~l~~~~~n~~~n-----~~~~~~~~l~w~~~~~~~~~~~fDlIl 144 (241)
++||-||-|.|-..-.+.+.. .+++.+|+++ ++++.+++-...- ..++.+..-|-.++... ...+||+|+
T Consensus 78 k~VLiiGgGdG~tlRevlkh~~ve~i~~VEID~--~Vi~~ar~~l~~~~~~~~dpRv~i~i~Dg~~~v~~-~~~~fDvIi 154 (282)
T COG0421 78 KRVLIIGGGDGGTLREVLKHLPVERITMVEIDP--AVIELARKYLPEPSGGADDPRVEIIIDDGVEFLRD-CEEKFDVII 154 (282)
T ss_pred CeEEEECCCccHHHHHHHhcCCcceEEEEEcCH--HHHHHHHHhccCcccccCCCceEEEeccHHHHHHh-CCCcCCEEE
Confidence 699999999999999999986 4899999996 6998888754322 23444444443333222 233899999
Q ss_pred Ec--CCcCCC---ccHHHHHHHHHHHhhcCCCeEEEEE
Q 026274 145 GA--DVFYDA---SAFDDLFATITYLLQSSPGSVFITT 177 (241)
Q Consensus 145 ~~--dvly~~---~~~~~ll~~~~~lL~~~~~~~~~~~ 177 (241)
.- |.. -+ -.-..+++.++++|+ ++|+++.-
T Consensus 155 ~D~tdp~-gp~~~Lft~eFy~~~~~~L~--~~Gi~v~q 189 (282)
T COG0421 155 VDSTDPV-GPAEALFTEEFYEGCRRALK--EDGIFVAQ 189 (282)
T ss_pred EcCCCCC-CcccccCCHHHHHHHHHhcC--CCcEEEEe
Confidence 42 221 11 124788999999998 66766655
|
|
| >PF03141 Methyltransf_29: Putative S-adenosyl-L-methionine-dependent methyltransferase; InterPro: IPR004159 Members of this family of hypothetical plant proteins are putative methyltransferases | Back alignment and domain information |
|---|
Probab=97.14 E-value=0.0011 Score=61.33 Aligned_cols=128 Identities=9% Similarity=-0.004 Sum_probs=77.1
Q ss_pred CcceEEeccHHHHHHHHHhccCC-CCC---CeEEEecCCCCHHHHHHHHhCCEEEEEcCCCc-HHHHHHHHHHHHHcCCc
Q 026274 46 EYGLFVWPCSVILAEYVWQQRYR-FSG---ANVVELGAGTSLPGLVAAKVGSNVTLTDDSNR-IEVLKNMRRVCEMNKLN 120 (241)
Q Consensus 46 ~~g~~~W~~s~~L~~~l~~~~~~-~~~---~~VLElGcGtGl~sl~la~~g~~V~~tD~~~~-~~~l~~~~~n~~~n~~~ 120 (241)
+.|.....++..-.++|.+.... ..+ ..+||+|||+|.+|..+..++..+..+-..+. +..++.+. ..|+.
T Consensus 89 gggt~F~~Ga~~Yid~i~~~~~~~~~~g~iR~~LDvGcG~aSF~a~l~~r~V~t~s~a~~d~~~~qvqfal----eRGvp 164 (506)
T PF03141_consen 89 GGGTMFPHGADHYIDQIAEMIPLIKWGGGIRTALDVGCGVASFGAYLLERNVTTMSFAPNDEHEAQVQFAL----ERGVP 164 (506)
T ss_pred CCCccccCCHHHHHHHHHHHhhccccCCceEEEEeccceeehhHHHHhhCCceEEEcccccCCchhhhhhh----hcCcc
Confidence 45555555666656666554332 122 35899999999999999998864433333211 11222222 23543
Q ss_pred eEEEEeecCCCCcCcCCCCCcEEEEcCCcCC-CccHHHHHHHHHHHhhcCCCeEEEEEeecc
Q 026274 121 CRVMGLTWGFLDASIFDLNPNIILGADVFYD-ASAFDDLFATITYLLQSSPGSVFITTYHNR 181 (241)
Q Consensus 121 ~~~~~l~w~~~~~~~~~~~fDlIl~~dvly~-~~~~~~ll~~~~~lL~~~~~~~~~~~~~~r 181 (241)
.-+.. .+....+.++..||+|-++.|+-. ...-.-++-.+.++|+ |||.|+.+...-
T Consensus 165 a~~~~--~~s~rLPfp~~~fDmvHcsrc~i~W~~~~g~~l~evdRvLR--pGGyfv~S~ppv 222 (506)
T PF03141_consen 165 AMIGV--LGSQRLPFPSNAFDMVHCSRCLIPWHPNDGFLLFEVDRVLR--PGGYFVLSGPPV 222 (506)
T ss_pred hhhhh--hccccccCCccchhhhhcccccccchhcccceeehhhhhhc--cCceEEecCCcc
Confidence 22111 122224666789999999998843 3333567888999998 778888775543
|
; GO: 0008168 methyltransferase activity |
| >PF01234 NNMT_PNMT_TEMT: NNMT/PNMT/TEMT family; InterPro: IPR000940 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals | Back alignment and domain information |
|---|
Probab=97.11 E-value=0.0022 Score=55.02 Aligned_cols=131 Identities=13% Similarity=0.177 Sum_probs=75.6
Q ss_pred CCCCCCeEEEecCCCCHHHHHHHHhCC-EEEEEcCCCcHHHHHHHHHHHHHc----------------CC----------
Q 026274 67 YRFSGANVVELGAGTSLPGLVAAKVGS-NVTLTDDSNRIEVLKNMRRVCEMN----------------KL---------- 119 (241)
Q Consensus 67 ~~~~~~~VLElGcGtGl~sl~la~~g~-~V~~tD~~~~~~~l~~~~~n~~~n----------------~~---------- 119 (241)
...+|.++||+|||.-+..+..|..-+ +++++|+.+ .-.+.+++-++.. |.
T Consensus 53 g~~~g~~llDiGsGPtiy~~lsa~~~f~~I~l~dy~~--~N~~el~kWl~~~~a~DWs~~~~~v~~lEg~~~~~~e~e~~ 130 (256)
T PF01234_consen 53 GGVKGETLLDIGSGPTIYQLLSACEWFEEIVLSDYSE--QNREELEKWLRKEGAFDWSPFWKYVCELEGKREKWEEKEEK 130 (256)
T ss_dssp SSS-EEEEEEES-TT--GGGTTGGGTEEEEEEEESSH--HHHHHHHHHHTT-TS--THHHHHHHHHHTTSSSGHHHHHHH
T ss_pred cCcCCCEEEEeCCCcHHHhhhhHHHhhcceEEeeccH--hhHHHHHHHHCCCCCCCccHHHHHHHhccCCcchhhhHHHH
Confidence 445788999999999877665555544 799999996 3444444433221 10
Q ss_pred -c--e-EEEEeecCCCCcCc-----CCCCCcEEEEcCCcCC----CccHHHHHHHHHHHhhcCCCeEEEEEeec------
Q 026274 120 -N--C-RVMGLTWGFLDASI-----FDLNPNIILGADVFYD----ASAFDDLFATITYLLQSSPGSVFITTYHN------ 180 (241)
Q Consensus 120 -~--~-~~~~l~w~~~~~~~-----~~~~fDlIl~~dvly~----~~~~~~ll~~~~~lL~~~~~~~~~~~~~~------ 180 (241)
+ + .+...|..... ++ .+.+||+|+++=|+.. .+.....++.+.++|| |||.+++..-.
T Consensus 131 lR~~Vk~Vv~cDV~~~~-pl~~~~~~p~~~D~v~s~fcLE~a~~d~~~y~~al~ni~~lLk--pGG~Lil~~~l~~t~Y~ 207 (256)
T PF01234_consen 131 LRRAVKQVVPCDVTQPN-PLDPPVVLPPKFDCVISSFCLESACKDLDEYRRALRNISSLLK--PGGHLILAGVLGSTYYM 207 (256)
T ss_dssp HHHHEEEEEE--TTSSS-TTTTS-SS-SSEEEEEEESSHHHH-SSHHHHHHHHHHHHTTEE--EEEEEEEEEESS-SEEE
T ss_pred HHHhhceEEEeeccCCC-CCCccccCccchhhhhhhHHHHHHcCCHHHHHHHHHHHHHHcC--CCcEEEEEEEcCceeEE
Confidence 0 2 12333333221 11 1235999999887754 4567788888899998 55655544111
Q ss_pred ---------cCchhHHHHHHHHcCCEEEEEe
Q 026274 181 ---------RSGHHLIEFLMVKWGLKCVKLV 202 (241)
Q Consensus 181 ---------r~~~~~~~~~~~~~g~~~~~i~ 202 (241)
.-....+...+++.||.+....
T Consensus 208 vG~~~F~~l~l~ee~v~~al~~aG~~i~~~~ 238 (256)
T PF01234_consen 208 VGGHKFPCLPLNEEFVREALEEAGFDIEDLE 238 (256)
T ss_dssp ETTEEEE---B-HHHHHHHHHHTTEEEEEEE
T ss_pred ECCEecccccCCHHHHHHHHHHcCCEEEecc
Confidence 1123455556789999988874
|
The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. Several cytoplasmic vertebrate methyltransferases are evolutionary related [], including nicotinamide N-methyltransferase (2.1.1.1 from EC) (NNMT); phenylethanolamine N-methyltransferase (2.1.1.28 from EC) (PNMT); and thioether S-methyltransferase (2.1.1.96 from EC) (TEMT). NNMT catalyzes the N-methylation of nicotinamide and other pyridines to form pyridinium ions. This activity is important for the biotransformation of many drugs and xenobiotic compounds. PNMT catalyzes the last step in catecholamine biosynthesis, the conversion of noradrenalin to adrenalin; and TEMT catalyzes the methylation of dimethyl sulphide into trimethylsulphonium. These three enzymes use S-adenosyl-L-methionine as the methyl donor. They are proteins of 30 to 32 kDa.; GO: 0008168 methyltransferase activity; PDB: 2IIP_C 3ROD_A 2OBF_A 3HCA_B 2ONY_B 3KR1_A 2OPB_B 3KQP_B 2AN4_B 3KQM_A .... |
| >KOG3987 consensus Uncharacterized conserved protein DREV/CGI-81 [Function unknown] | Back alignment and domain information |
|---|
Probab=97.10 E-value=0.00035 Score=57.61 Aligned_cols=91 Identities=22% Similarity=0.275 Sum_probs=67.0
Q ss_pred CCeEEEecCCCCHHHHHHHHhCCEEEEEcCCCcHHHHHHHHHHHHHcCCceEEEEeecCCCCcCcCCCCCcEEEEcCCcC
Q 026274 71 GANVVELGAGTSLPGLVAAKVGSNVTLTDDSNRIEVLKNMRRVCEMNKLNCRVMGLTWGFLDASIFDLNPNIILGADVFY 150 (241)
Q Consensus 71 ~~~VLElGcGtGl~sl~la~~g~~V~~tD~~~~~~~l~~~~~n~~~n~~~~~~~~l~w~~~~~~~~~~~fDlIl~~dvly 150 (241)
+.++||||+|-|-++..++..-.+|.+|+.|. .|...++. .+-++ ...++|.+. +-+||+|.|-.++-
T Consensus 113 ~~~lLDlGAGdGeit~~m~p~feevyATElS~--tMr~rL~k----k~ynV-l~~~ew~~t-----~~k~dli~clNlLD 180 (288)
T KOG3987|consen 113 PVTLLDLGAGDGEITLRMAPTFEEVYATELSW--TMRDRLKK----KNYNV-LTEIEWLQT-----DVKLDLILCLNLLD 180 (288)
T ss_pred CeeEEeccCCCcchhhhhcchHHHHHHHHhhH--HHHHHHhh----cCCce-eeehhhhhc-----CceeehHHHHHHHH
Confidence 47899999999999988887766899999995 36554443 23222 234566542 34799999988886
Q ss_pred CCccHHHHHHHHHHHhhcCCCeE
Q 026274 151 DASAFDDLFATITYLLQSSPGSV 173 (241)
Q Consensus 151 ~~~~~~~ll~~~~~lL~~~~~~~ 173 (241)
-..+.-.|++-++..|+|+.|-+
T Consensus 181 Rc~~p~kLL~Di~~vl~psngrv 203 (288)
T KOG3987|consen 181 RCFDPFKLLEDIHLVLAPSNGRV 203 (288)
T ss_pred hhcChHHHHHHHHHHhccCCCcE
Confidence 66678899999999999755443
|
|
| >COG1568 Predicted methyltransferases [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.08 E-value=0.0026 Score=54.69 Aligned_cols=130 Identities=15% Similarity=0.152 Sum_probs=91.8
Q ss_pred CCCCCeEEEecCCCCHHHHHHHHhCC--EEEEEcCCCcHHHHHHHHHHHHHcCCc-eEEEEeecCCCCcCcCCCCCcEEE
Q 026274 68 RFSGANVVELGAGTSLPGLVAAKVGS--NVTLTDDSNRIEVLKNMRRVCEMNKLN-CRVMGLTWGFLDASIFDLNPNIIL 144 (241)
Q Consensus 68 ~~~~~~VLElGcGtGl~sl~la~~g~--~V~~tD~~~~~~~l~~~~~n~~~n~~~-~~~~~l~w~~~~~~~~~~~fDlIl 144 (241)
...|+.|+=+| ---+.|+++|.-|- +|..+|+++ .+++.+.+-++.-+.+ +.+..+|..++..+....+||+++
T Consensus 150 DL~gK~I~vvG-DDDLtsia~aLt~mpk~iaVvDIDE--Rli~fi~k~aee~g~~~ie~~~~Dlr~plpe~~~~kFDvfi 226 (354)
T COG1568 150 DLEGKEIFVVG-DDDLTSIALALTGMPKRIAVVDIDE--RLIKFIEKVAEELGYNNIEAFVFDLRNPLPEDLKRKFDVFI 226 (354)
T ss_pred CcCCCeEEEEc-CchhhHHHHHhcCCCceEEEEechH--HHHHHHHHHHHHhCccchhheeehhcccChHHHHhhCCeee
Confidence 45788999999 66688888887654 899999997 4899999988888876 777888887776555567999887
Q ss_pred EcCCcCCCccHHHHHHHHHHHhhc-CCCeEEEEEeeccCchh--HHHH-HHHHcCCEEEEE
Q 026274 145 GADVFYDASAFDDLFATITYLLQS-SPGSVFITTYHNRSGHH--LIEF-LMVKWGLKCVKL 201 (241)
Q Consensus 145 ~~dvly~~~~~~~ll~~~~~lL~~-~~~~~~~~~~~~r~~~~--~~~~-~~~~~g~~~~~i 201 (241)
.|+.+....+..++..=-..|+. +..|.|.++....+-.. .++. +...+||-.+.+
T Consensus 227 -TDPpeTi~alk~FlgRGI~tLkg~~~aGyfgiT~ressidkW~eiQr~lIn~~gvVITdi 286 (354)
T COG1568 227 -TDPPETIKALKLFLGRGIATLKGEGCAGYFGITRRESSIDKWREIQRILINEMGVVITDI 286 (354)
T ss_pred -cCchhhHHHHHHHHhccHHHhcCCCccceEeeeeccccHHHHHHHHHHHHHhcCeeeHhh
Confidence 67777777777777554444542 22256666654433222 2223 457788877776
|
|
| >KOG1663 consensus O-methyltransferase [Secondary metabolites biosynthesis, transport and catabolism] | Back alignment and domain information |
|---|
Probab=96.96 E-value=0.006 Score=51.13 Aligned_cols=105 Identities=11% Similarity=0.071 Sum_probs=71.7
Q ss_pred CCCCCCeEEEecCCCCHHHHHHHHh---CCEEEEEcCCCcHHHHHHHHHHHHHcCC--ceEEEEeecCCCCcC----cCC
Q 026274 67 YRFSGANVVELGAGTSLPGLVAAKV---GSNVTLTDDSNRIEVLKNMRRVCEMNKL--NCRVMGLTWGFLDAS----IFD 137 (241)
Q Consensus 67 ~~~~~~~VLElGcGtGl~sl~la~~---g~~V~~tD~~~~~~~l~~~~~n~~~n~~--~~~~~~l~w~~~~~~----~~~ 137 (241)
...+.+++||||.=||.-++..|.. +.+|++.|+++ +..+...+-++..+. .+++.+..--+...+ ...
T Consensus 70 ~~~~ak~~lelGvfTGySaL~~Alalp~dGrv~a~eid~--~~~~~~~~~~k~agv~~KI~~i~g~a~esLd~l~~~~~~ 147 (237)
T KOG1663|consen 70 RLLNAKRTLELGVFTGYSALAVALALPEDGRVVAIEIDA--DAYEIGLELVKLAGVDHKITFIEGPALESLDELLADGES 147 (237)
T ss_pred HHhCCceEEEEecccCHHHHHHHHhcCCCceEEEEecCh--HHHHHhHHHHHhccccceeeeeecchhhhHHHHHhcCCC
Confidence 3467789999999999887777765 56999999996 577777776766665 455555443332221 123
Q ss_pred CCCcEEEEcCCcCCCccHHHHHHHHHHHhhcCCCeEEEEEe
Q 026274 138 LNPNIILGADVFYDASAFDDLFATITYLLQSSPGSVFITTY 178 (241)
Q Consensus 138 ~~fDlIl~~dvly~~~~~~~ll~~~~~lL~~~~~~~~~~~~ 178 (241)
+.||.++.- .+-.+.....+.+-+|++ +||++++..
T Consensus 148 ~tfDfaFvD---adK~nY~~y~e~~l~Llr--~GGvi~~DN 183 (237)
T KOG1663|consen 148 GTFDFAFVD---ADKDNYSNYYERLLRLLR--VGGVIVVDN 183 (237)
T ss_pred CceeEEEEc---cchHHHHHHHHHHHhhcc--cccEEEEec
Confidence 489999853 223344477788888988 678777663
|
|
| >TIGR03439 methyl_EasF probable methyltransferase domain, EasF family | Back alignment and domain information |
|---|
Probab=96.95 E-value=0.018 Score=51.08 Aligned_cols=107 Identities=21% Similarity=0.165 Sum_probs=64.4
Q ss_pred CCCeEEEecCCCCHH-HHHHHHh-----CCEEEEEcCCCcHHHHHHHHHHHH-HcCCceEE--EEeecCCCCcCc----C
Q 026274 70 SGANVVELGAGTSLP-GLVAAKV-----GSNVTLTDDSNRIEVLKNMRRVCE-MNKLNCRV--MGLTWGFLDASI----F 136 (241)
Q Consensus 70 ~~~~VLElGcGtGl~-sl~la~~-----g~~V~~tD~~~~~~~l~~~~~n~~-~n~~~~~~--~~l~w~~~~~~~----~ 136 (241)
.+..++|||||.|.= .+.|..+ ...++.+|+|. ++|+.+..++. ..-..+.+ ...+..+....+ .
T Consensus 76 ~~~~lIELGsG~~~Kt~~LL~aL~~~~~~~~Y~plDIS~--~~L~~a~~~L~~~~~p~l~v~~l~gdy~~~l~~l~~~~~ 153 (319)
T TIGR03439 76 SGSMLVELGSGNLRKVGILLEALERQKKSVDYYALDVSR--SELQRTLAELPLGNFSHVRCAGLLGTYDDGLAWLKRPEN 153 (319)
T ss_pred CCCEEEEECCCchHHHHHHHHHHHhcCCCceEEEEECCH--HHHHHHHHhhhhccCCCeEEEEEEecHHHHHhhcccccc
Confidence 456899999999953 3333332 34799999995 69988888887 33233444 333333221111 1
Q ss_pred CCCCcEEEEc-CCcCC--CccHHHHHHHHHH-HhhcCCCeEEEEEeec
Q 026274 137 DLNPNIILGA-DVFYD--ASAFDDLFATITY-LLQSSPGSVFITTYHN 180 (241)
Q Consensus 137 ~~~fDlIl~~-dvly~--~~~~~~ll~~~~~-lL~~~~~~~~~~~~~~ 180 (241)
.....+++.- -.+-+ +.....+++.+.+ .|+ +++.++++...
T Consensus 154 ~~~~r~~~flGSsiGNf~~~ea~~fL~~~~~~~l~--~~d~lLiG~D~ 199 (319)
T TIGR03439 154 RSRPTTILWLGSSIGNFSRPEAAAFLAGFLATALS--PSDSFLIGLDG 199 (319)
T ss_pred cCCccEEEEeCccccCCCHHHHHHHHHHHHHhhCC--CCCEEEEecCC
Confidence 2235566543 35544 4566688888888 886 55666666433
|
This model represents an uncharacterized domain of about 300 amino acids with homology to S-adenosylmethionine-dependent methyltransferases. Proteins with this domain are exclusively fungal. A few, such as EasF from Neotyphodium lolii, are associated with the biosynthesis of ergot alkaloids, a class of fungal secondary metabolites. EasF may, in fact, be the AdoMet:dimethylallyltryptophan N-methyltransferase, the enzyme that follows tryptophan dimethylallyltransferase (DMATS) in ergot alkaloid biosynthesis. Several other members of this family, including mug158 (meiotically up-regulated gene 158 protein) from Schizosaccharomyces pombe, contain an additional uncharacterized domain DUF323 (pfam03781). |
| >cd00315 Cyt_C5_DNA_methylase Cytosine-C5 specific DNA methylases; Methyl transfer reactions play an important role in many aspects of biology | Back alignment and domain information |
|---|
Probab=96.82 E-value=0.049 Score=47.23 Aligned_cols=122 Identities=14% Similarity=0.079 Sum_probs=70.3
Q ss_pred eEEEecCCCCHHHHHHHHhCCE-EEEEcCCCcHHHHHHHHHHHHHcCCceEEEEeecCCCCcCcCCCCCcEEEEcCCcCC
Q 026274 73 NVVELGAGTSLPGLVAAKVGSN-VTLTDDSNRIEVLKNMRRVCEMNKLNCRVMGLTWGFLDASIFDLNPNIILGADVFYD 151 (241)
Q Consensus 73 ~VLElGcGtGl~sl~la~~g~~-V~~tD~~~~~~~l~~~~~n~~~n~~~~~~~~l~w~~~~~~~~~~~fDlIl~~dvly~ 151 (241)
+|+||-||.|.+++.+.+.|++ |.++|+++ .+++..+.|....-....+..++..+ ....+|+|+++.+.-.
T Consensus 2 ~v~dLFsG~Gg~~~gl~~~G~~~v~a~e~~~--~a~~~~~~N~~~~~~~~Di~~~~~~~-----~~~~~D~l~~gpPCq~ 74 (275)
T cd00315 2 RVIDLFAGIGGFRLGLEKAGFEIVAANEIDK--SAAETYEANFPNKLIEGDITKIDEKD-----FIPDIDLLTGGFPCQP 74 (275)
T ss_pred cEEEEccCcchHHHHHHHcCCEEEEEEeCCH--HHHHHHHHhCCCCCccCccccCchhh-----cCCCCCEEEeCCCChh
Confidence 6999999999999999999985 78899995 58887777764221111222222211 1246999998876532
Q ss_pred C----------ccHHHHHHHHHHHhhcCCCeEEEEEeecc-------CchhHHHHHHHHcCCEEEEE
Q 026274 152 A----------SAFDDLFATITYLLQSSPGSVFITTYHNR-------SGHHLIEFLMVKWGLKCVKL 201 (241)
Q Consensus 152 ~----------~~~~~ll~~~~~lL~~~~~~~~~~~~~~r-------~~~~~~~~~~~~~g~~~~~i 201 (241)
. +.-..|+..+.++++.-.-.+|++.--.. .....+...+++.|+.+...
T Consensus 75 fS~ag~~~~~~d~r~~L~~~~~~~i~~~~P~~~v~ENV~g~~~~~~~~~~~~i~~~l~~~GY~~~~~ 141 (275)
T cd00315 75 FSIAGKRKGFEDTRGTLFFEIIRILKEKKPKYFLLENVKGLLTHDNGNTLKVILNTLEELGYNVYWK 141 (275)
T ss_pred hhHHhhcCCCCCchHHHHHHHHHHHHhcCCCEEEEEcCcchhccCchHHHHHHHHHHHhCCcEEEEE
Confidence 1 12233554444555432223444432111 11122333457889887654
|
Cytosine-specific DNA methylases are found both in prokaryotes and eukaryotes. DNA methylation, or the covalent addition of a methyl group to cytosine within the context of the CpG dinucleotide, has profound effects on the mammalian genome. These effects include transcriptional repression via inhibition of transcription factor binding or the recruitment of methyl-binding proteins and their associated chromatin remodeling factors, X chromosome inactivation, imprinting and the suppression of parasitic DNA sequences. DNA methylation is also essential for proper embryonic development and is an important player in both DNA repair and genome stability. |
| >COG0144 Sun tRNA and rRNA cytosine-C5-methylases [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=96.77 E-value=0.072 Score=47.98 Aligned_cols=131 Identities=17% Similarity=0.131 Sum_probs=82.3
Q ss_pred CCCCCeEEEecCCCCHHHHHHHHhC----CEEEEEcCCCcHHHHHHHHHHHHHcCCce-EEEEeecCCCCcCcCC-CCCc
Q 026274 68 RFSGANVVELGAGTSLPGLVAAKVG----SNVTLTDDSNRIEVLKNMRRVCEMNKLNC-RVMGLTWGFLDASIFD-LNPN 141 (241)
Q Consensus 68 ~~~~~~VLElGcGtGl~sl~la~~g----~~V~~tD~~~~~~~l~~~~~n~~~n~~~~-~~~~l~w~~~~~~~~~-~~fD 141 (241)
...|.+|||+.++.|-=+..+|++. ..|++.|.++ .=++.++.|++.-|... .+...|-......... .+||
T Consensus 154 p~pge~VlD~cAAPGGKTthla~~~~~~~~iV~A~D~~~--~Rl~~l~~nl~RlG~~nv~~~~~d~~~~~~~~~~~~~fD 231 (355)
T COG0144 154 PKPGERVLDLCAAPGGKTTHLAELMENEGAIVVAVDVSP--KRLKRLRENLKRLGVRNVIVVNKDARRLAELLPGGEKFD 231 (355)
T ss_pred CCCcCEEEEECCCCCCHHHHHHHhcCCCCceEEEEcCCH--HHHHHHHHHHHHcCCCceEEEecccccccccccccCcCc
Confidence 4567899999999997777777764 3589999996 58889999999888763 3344333222212122 2599
Q ss_pred EEEEc------CCc-------CCC---------ccHHHHHHHHHHHhhcCCCeEEEEE--eeccCchhHHHHHHHHc-CC
Q 026274 142 IILGA------DVF-------YDA---------SAFDDLFATITYLLQSSPGSVFITT--YHNRSGHHLIEFLMVKW-GL 196 (241)
Q Consensus 142 lIl~~------dvl-------y~~---------~~~~~ll~~~~~lL~~~~~~~~~~~--~~~r~~~~~~~~~~~~~-g~ 196 (241)
.|+.- -++ +.. .....+++...+++++ +|.++|.. .....+...+..+++++ ++
T Consensus 232 ~iLlDaPCSg~G~irr~Pd~~~~~~~~~i~~l~~lQ~~iL~~a~~~lk~-GG~LVYSTCS~~~eENE~vV~~~L~~~~~~ 310 (355)
T COG0144 232 RILLDAPCSGTGVIRRDPDVKWRRTPEDIAELAKLQKEILAAALKLLKP-GGVLVYSTCSLTPEENEEVVERFLERHPDF 310 (355)
T ss_pred EEEECCCCCCCcccccCccccccCCHHHHHHHHHHHHHHHHHHHHhcCC-CCEEEEEccCCchhcCHHHHHHHHHhCCCc
Confidence 99842 222 111 1356778888888873 33344433 23344455566666554 77
Q ss_pred EEEEE
Q 026274 197 KCVKL 201 (241)
Q Consensus 197 ~~~~i 201 (241)
+...+
T Consensus 311 ~~~~~ 315 (355)
T COG0144 311 ELEPV 315 (355)
T ss_pred eeecc
Confidence 77665
|
|
| >PF01728 FtsJ: FtsJ-like methyltransferase; InterPro: IPR002877 RrmJ (FtsJ) is a well conserved heat shock protein present in prokaryotes, archaea, and eukaryotes | Back alignment and domain information |
|---|
Probab=96.43 E-value=0.0066 Score=48.99 Aligned_cols=50 Identities=22% Similarity=0.116 Sum_probs=40.0
Q ss_pred ccHHHHHHHHHhccCCC--CCCeEEEecCCCCHHHHHHHHhC---CEEEEEcCCC
Q 026274 53 PCSVILAEYVWQQRYRF--SGANVVELGAGTSLPGLVAAKVG---SNVTLTDDSN 102 (241)
Q Consensus 53 ~~s~~L~~~l~~~~~~~--~~~~VLElGcGtGl~sl~la~~g---~~V~~tD~~~ 102 (241)
.|++.|.+.+....... .+.+||||||++|-++.++.+.+ .+|+++|+.+
T Consensus 4 Ra~~KL~ei~~~~~~~~~~~~~~vlDlG~aPGGws~~~~~~~~~~~~v~avDl~~ 58 (181)
T PF01728_consen 4 RAAFKLYEIDEKFKIFKPGKGFTVLDLGAAPGGWSQVLLQRGGPAGRVVAVDLGP 58 (181)
T ss_dssp THHHHHHHHHHTTSSS-TTTTEEEEEET-TTSHHHHHHHTSTTTEEEEEEEESSS
T ss_pred HHHHHHHHHHHHCCCCCcccccEEEEcCCcccceeeeeeecccccceEEEEeccc
Confidence 46778888877766222 45899999999999999999988 5899999997
|
RrmJ is responsible for methylating 23 S rRNA at position U2552 in the aminoacyl (A)1-site of the ribosome []. U2552 is one of the five universally conserved A-loop residues and has been shown to be methylated at the ribose 2'-OH group in the majority of organisms investigated so far. This suggests that this modification plays an important role in the A-loop function. RrmJ recognises its methylation target only when the 23 S rRNA is present in 50 S ribosomal subunits. This suggests that the RrmJ-mediated methylation must occur late in the maturation process of the ribosome. This is in contrast to other known 23 S rRNA modifications that occur in earlier maturation steps. The 1.5 A crystal structure of RrmJ in complex with its cofactor S-adenosylmethionine revealed that RrmJ has a methyltransferase fold. The active site of RrmJ appears to be formed by a catalytic triad consisting of two lysine residues and the negatively charged aspartate residue. Another highly conserved glutamate residue that is present in the active site of RrmJ appears to play only a minor role in the methyltransfer reaction in vivo []. ; GO: 0003676 nucleic acid binding, 0008168 methyltransferase activity, 0032259 methylation; PDB: 3GCZ_A 2PLW_A 2NYU_A 2OXT_C 3EMD_A 3ELY_A 3ELW_A 3ELU_A 3ELD_A 3EMB_A .... |
| >PF03059 NAS: Nicotianamine synthase protein; InterPro: IPR004298 Nicotianamine synthase 2 | Back alignment and domain information |
|---|
Probab=96.25 E-value=0.07 Score=46.33 Aligned_cols=100 Identities=18% Similarity=0.203 Sum_probs=59.3
Q ss_pred CeEEEecCC-CCHHHHHHHHh---CCEEEEEcCCCcHHHHHHHHHHHH-Hc--CCceEEEEeecCCCCcCcCCCCCcEEE
Q 026274 72 ANVVELGAG-TSLPGLVAAKV---GSNVTLTDDSNRIEVLKNMRRVCE-MN--KLNCRVMGLTWGFLDASIFDLNPNIIL 144 (241)
Q Consensus 72 ~~VLElGcG-tGl~sl~la~~---g~~V~~tD~~~~~~~l~~~~~n~~-~n--~~~~~~~~l~w~~~~~~~~~~~fDlIl 144 (241)
++|+=|||| .-+.++.+++. ++.|++.|+++ ++.+.+++-+. .. +..+++...|..+...+ -..||+|+
T Consensus 122 ~rVaFIGSGPLPlT~i~la~~~~~~~~v~~iD~d~--~A~~~a~~lv~~~~~L~~~m~f~~~d~~~~~~d--l~~~DvV~ 197 (276)
T PF03059_consen 122 SRVAFIGSGPLPLTSIVLAKQHGPGARVHNIDIDP--EANELARRLVASDLGLSKRMSFITADVLDVTYD--LKEYDVVF 197 (276)
T ss_dssp -EEEEE---SS-HHHHHHH--HTT--EEEEEESSH--HHHHHHHHHHH---HH-SSEEEEES-GGGG-GG------SEEE
T ss_pred ceEEEEcCCCcchHHHHHHHHhCCCCeEEEEeCCH--HHHHHHHHHHhhcccccCCeEEEecchhccccc--cccCCEEE
Confidence 599999999 66999999975 45899999995 68888887666 22 34567776665433211 13799998
Q ss_pred EcCCcC-CCccHHHHHHHHHHHhhcCCCeEEEEE
Q 026274 145 GADVFY-DASAFDDLFATITYLLQSSPGSVFITT 177 (241)
Q Consensus 145 ~~dvly-~~~~~~~ll~~~~~lL~~~~~~~~~~~ 177 (241)
.+-.+. ..+.-..+++.+.+.++ +|+.+++=
T Consensus 198 lAalVg~~~e~K~~Il~~l~~~m~--~ga~l~~R 229 (276)
T PF03059_consen 198 LAALVGMDAEPKEEILEHLAKHMA--PGARLVVR 229 (276)
T ss_dssp E-TT-S----SHHHHHHHHHHHS---TTSEEEEE
T ss_pred EhhhcccccchHHHHHHHHHhhCC--CCcEEEEe
Confidence 777776 46688899999999987 66766654
|
5.1.43 from EC catalyzes the trimerization of S-adenosylmethionine to yield one molecule of nicotianamine. Nicotianamine has an important role in plant iron uptake mechanisms. Plants adopt two strategies (termed I and II) of iron acquisition. Strategy I is adopted by all higher plants except graminaceous plants, which adopt strategy II [, ]. In strategy I plants, the role of nicotianamine is not fully determined: possible roles include the formation of more stable complexes with ferrous than with ferric ion, which might serve as a sensor of the physiological status of iron within a plant, or which might be involved in the transport of iron []. In strategy II (graminaceous) plants, nicotianamine is the key intermediate (and nicotianamine synthase the key enzyme) in the synthesis of the mugineic family (the only known family in plants) of phytosiderophores. Phytosiderophores are iron chelators whose secretion by the roots is greatly increased in instances of iron deficiency []. The 3D structures of five example NAS from Methanothermobacter thermautotrophicus reveal the monomer to consist of a five-helical bundle N-terminal domain on top of a classic Rossmann fold C-terminal domain. The N-terminal domain is unique to the NAS family, whereas the C-terminal domain is homologous to the class I family of SAM-dependent methyltransferases. An active site is created at the interface of the two domains, at the rim of a large cavity that corresponds to the nucleotide binding site such as is found in other proteins adopting a Rossmann fold [].; GO: 0030410 nicotianamine synthase activity, 0030418 nicotianamine biosynthetic process; PDB: 3O31_B 3FPH_A 3FPJ_A 3FPE_B 3FPF_B 3FPG_B. |
| >PF01189 Nol1_Nop2_Fmu: NOL1/NOP2/sun family; InterPro: IPR001678 This domain is found in archaeal, bacterial and eukaryotic proteins | Back alignment and domain information |
|---|
Probab=96.13 E-value=0.083 Score=46.07 Aligned_cols=148 Identities=15% Similarity=0.141 Sum_probs=92.0
Q ss_pred cceEEeccHHHHHHHHHhccCCCCCCeEEEecCCCCHHHHHHHHhC---CEEEEEcCCCcHHHHHHHHHHHHHcCCc-eE
Q 026274 47 YGLFVWPCSVILAEYVWQQRYRFSGANVVELGAGTSLPGLVAAKVG---SNVTLTDDSNRIEVLKNMRRVCEMNKLN-CR 122 (241)
Q Consensus 47 ~g~~~W~~s~~L~~~l~~~~~~~~~~~VLElGcGtGl~sl~la~~g---~~V~~tD~~~~~~~l~~~~~n~~~n~~~-~~ 122 (241)
....+++.+-.++..+.. ...+.+|||+.||.|-=+..++... ..|++.|++. .-+..++.|++..|.. +.
T Consensus 65 G~~~vQd~sS~l~~~~L~---~~~~~~VLD~CAapGgKt~~la~~~~~~g~i~A~D~~~--~Rl~~l~~~~~r~g~~~v~ 139 (283)
T PF01189_consen 65 GLFYVQDESSQLVALALD---PQPGERVLDMCAAPGGKTTHLAELMGNKGEIVANDISP--KRLKRLKENLKRLGVFNVI 139 (283)
T ss_dssp TSEEEHHHHHHHHHHHHT---TTTTSEEEESSCTTSHHHHHHHHHTTTTSEEEEEESSH--HHHHHHHHHHHHTT-SSEE
T ss_pred CcEEeccccccccccccc---ccccccccccccCCCCceeeeeecccchhHHHHhccCH--HHHHHHHHHHHhcCCceEE
Confidence 335677777666666553 3467789999999998888888763 3899999995 6888899999887774 33
Q ss_pred EEEeecCCCCcCcCCCCCcEEEEcC------CcCCCc----------------cHHHHHHHHHHHh----hcCCCe-EEE
Q 026274 123 VMGLTWGFLDASIFDLNPNIILGAD------VFYDAS----------------AFDDLFATITYLL----QSSPGS-VFI 175 (241)
Q Consensus 123 ~~~l~w~~~~~~~~~~~fDlIl~~d------vly~~~----------------~~~~ll~~~~~lL----~~~~~~-~~~ 175 (241)
+...|............||.|+.-. ++...+ ....+++...+++ + +|| ++|
T Consensus 140 ~~~~D~~~~~~~~~~~~fd~VlvDaPCSg~G~i~r~p~~~~~~~~~~~~~l~~~Q~~iL~~a~~~~~~~~k--~gG~lvY 217 (283)
T PF01189_consen 140 VINADARKLDPKKPESKFDRVLVDAPCSGLGTIRRNPDIKWRRSPEDIEKLAELQREILDNAAKLLNIDFK--PGGRLVY 217 (283)
T ss_dssp EEESHHHHHHHHHHTTTEEEEEEECSCCCGGGTTTCTTHHHHE-TTHHHHHHHHHHHHHHHHHHCEHHHBE--EEEEEEE
T ss_pred EEeeccccccccccccccchhhcCCCccchhhhhhccchhhcccccccchHHHHHHHHHHHHHHhhccccc--CCCeEEE
Confidence 3333332221112233699998422 122111 3456677777787 7 444 455
Q ss_pred EEe--eccCchhHHHHHHHHc-CCEEEEE
Q 026274 176 TTY--HNRSGHHLIEFLMVKW-GLKCVKL 201 (241)
Q Consensus 176 ~~~--~~r~~~~~~~~~~~~~-g~~~~~i 201 (241)
..+ ........++.+++++ .|.+..+
T Consensus 218 sTCS~~~eENE~vV~~fl~~~~~~~l~~~ 246 (283)
T PF01189_consen 218 STCSLSPEENEEVVEKFLKRHPDFELVPI 246 (283)
T ss_dssp EESHHHGGGTHHHHHHHHHHSTSEEEECC
T ss_pred EeccHHHHHHHHHHHHHHHhCCCcEEEec
Confidence 443 3444455666666655 6666554
|
In the archaea and bacteria, they are annotated as putative nucleolar protein, Sun (Fmu) family protein or tRNA/rRNA cytosine-C5-methylase. The majority have the S-adenosyl methionine (SAM) binding domain and are related to Escherichia coli Fmu (Sun) protein (16S rRNA m5C 967 methyltransferase) whose structure has been determined []. In the eukaryota, the majority are annotated as being 'hypothetical protein', nucleolar protein or the Nop2/Sun (Fmu) family. Unlike their bacterial homologues, few of the eukaryotic members in this family have a the SAM binding signature. Despite this, Saccharomyces cerevisiae (Baker's yeast) Nop2p is a probable RNA m5C methyltransferase []. It is essential for processing and maturation of 27S pre-rRNA and large ribosomal subunit biogenesis []; localized to the nucleolus and is essential for viability []. Reduced Nop2p expression limits yeast growth and decreases levels of mature 60S ribosomal subunits while altering rRNA processing []. There is substantial identity between Nop2p and Homo sapiens (Human) p120 (NOL1), which is also called the proliferation-associated nucleolar antigen [, ].; PDB: 3M4X_A 2FRX_B 2YXL_A 1IXK_A 1SQG_A 1SQF_A 3M6U_B 3M6V_B 3M6W_A 3M6X_A .... |
| >KOG1269 consensus SAM-dependent methyltransferases [Lipid transport and metabolism; General function prediction only] | Back alignment and domain information |
|---|
Probab=96.04 E-value=0.018 Score=51.97 Aligned_cols=102 Identities=22% Similarity=0.375 Sum_probs=69.4
Q ss_pred CCCCeEEEecCCCCHHHHHHHHhC-CEEEEEcCCCcHHHHHHHHHHHH--HcCCceEEEEeecCCCCcCcCCCCCcEEEE
Q 026274 69 FSGANVVELGAGTSLPGLVAAKVG-SNVTLTDDSNRIEVLKNMRRVCE--MNKLNCRVMGLTWGFLDASIFDLNPNIILG 145 (241)
Q Consensus 69 ~~~~~VLElGcGtGl~sl~la~~g-~~V~~tD~~~~~~~l~~~~~n~~--~n~~~~~~~~l~w~~~~~~~~~~~fDlIl~ 145 (241)
..+..++++|||.|-+....+..+ +.+++.|+++. ++...-..+.. .++ ...++.-+... .+..+..||.+-+
T Consensus 109 ~~~~~~~~~~~g~~~~~~~i~~f~~~~~~Gl~~n~~-e~~~~~~~~~~~~l~~-k~~~~~~~~~~--~~fedn~fd~v~~ 184 (364)
T KOG1269|consen 109 FPGSKVLDVGTGVGGPSRYIAVFKKAGVVGLDNNAY-EAFRANELAKKAYLDN-KCNFVVADFGK--MPFEDNTFDGVRF 184 (364)
T ss_pred cccccccccCcCcCchhHHHHHhccCCccCCCcCHH-HHHHHHHHHHHHHhhh-hcceehhhhhc--CCCCccccCcEEE
Confidence 455679999999999999999875 69999999963 22211111111 111 11222222222 1334568999999
Q ss_pred cCCcCCCccHHHHHHHHHHHhhcCCCeEEEE
Q 026274 146 ADVFYDASAFDDLFATITYLLQSSPGSVFIT 176 (241)
Q Consensus 146 ~dvly~~~~~~~ll~~~~~lL~~~~~~~~~~ 176 (241)
.|+..|.++...+++.+.+.++ |||+++.
T Consensus 185 ld~~~~~~~~~~~y~Ei~rv~k--pGG~~i~ 213 (364)
T KOG1269|consen 185 LEVVCHAPDLEKVYAEIYRVLK--PGGLFIV 213 (364)
T ss_pred EeecccCCcHHHHHHHHhcccC--CCceEEe
Confidence 9999999999999999999988 6666553
|
|
| >PF07757 AdoMet_MTase: Predicted AdoMet-dependent methyltransferase; InterPro: IPR011671 tRNA (uracil-O(2)-)-methyltransferase catalyses the formation of O(2)-methyl-uracil at position 44 (m2U44) in tRNA(Ser) [] | Back alignment and domain information |
|---|
Probab=95.92 E-value=0.012 Score=43.64 Aligned_cols=32 Identities=22% Similarity=0.153 Sum_probs=28.7
Q ss_pred CCeEEEecCCCCHHHHHHHHhCCEEEEEcCCC
Q 026274 71 GANVVELGAGTSLPGLVAAKVGSNVTLTDDSN 102 (241)
Q Consensus 71 ~~~VLElGcGtGl~sl~la~~g~~V~~tD~~~ 102 (241)
....+|||||.|++--.|.+.|.+-.++|.-.
T Consensus 59 ~~~FVDlGCGNGLLV~IL~~EGy~G~GiD~R~ 90 (112)
T PF07757_consen 59 FQGFVDLGCGNGLLVYILNSEGYPGWGIDARR 90 (112)
T ss_pred CCceEEccCCchHHHHHHHhCCCCcccccccc
Confidence 34699999999999999999999999999864
|
; GO: 0008168 methyltransferase activity |
| >KOG2730 consensus Methylase [General function prediction only] | Back alignment and domain information |
|---|
Probab=95.87 E-value=0.0087 Score=49.95 Aligned_cols=81 Identities=11% Similarity=0.031 Sum_probs=63.0
Q ss_pred CCCeEEEecCCCCHHHHHHHHhCCEEEEEcCCCcHHHHHHHHHHHHHcCC--ceEEEEeecCCCCcCc--CCCCCcEEEE
Q 026274 70 SGANVVELGAGTSLPGLVAAKVGSNVTLTDDSNRIEVLKNMRRVCEMNKL--NCRVMGLTWGFLDASI--FDLNPNIILG 145 (241)
Q Consensus 70 ~~~~VLElGcGtGl~sl~la~~g~~V~~tD~~~~~~~l~~~~~n~~~n~~--~~~~~~l~w~~~~~~~--~~~~fDlIl~ 145 (241)
....|+|.-||.|-..+..|..|+.|+++|+++ .-+..++.|++.-|+ .+.+.+.||-+....+ ....+|++..
T Consensus 94 ~~~~iidaf~g~gGntiqfa~~~~~VisIdiDP--ikIa~AkhNaeiYGI~~rItFI~GD~ld~~~~lq~~K~~~~~vf~ 171 (263)
T KOG2730|consen 94 NAEVIVDAFCGVGGNTIQFALQGPYVIAIDIDP--VKIACARHNAEVYGVPDRITFICGDFLDLASKLKADKIKYDCVFL 171 (263)
T ss_pred CcchhhhhhhcCCchHHHHHHhCCeEEEEeccH--HHHHHHhccceeecCCceeEEEechHHHHHHHHhhhhheeeeeec
Confidence 445799999999999999999999999999996 688999999998887 4778888887643221 1124678887
Q ss_pred cCCcCCC
Q 026274 146 ADVFYDA 152 (241)
Q Consensus 146 ~dvly~~ 152 (241)
+...-.+
T Consensus 172 sppwggp 178 (263)
T KOG2730|consen 172 SPPWGGP 178 (263)
T ss_pred CCCCCCc
Confidence 7766444
|
|
| >COG3129 Predicted SAM-dependent methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=95.85 E-value=0.027 Score=47.49 Aligned_cols=93 Identities=15% Similarity=0.176 Sum_probs=56.8
Q ss_pred HHHHHHHhccCCC--CCCeEEEecCCCCH--HHHHHHHhCCEEEEEcCCCcHHHHHHHHHHHHHc-CCceEEEEeecCCC
Q 026274 57 ILAEYVWQQRYRF--SGANVVELGAGTSL--PGLVAAKVGSNVTLTDDSNRIEVLKNMRRVCEMN-KLNCRVMGLTWGFL 131 (241)
Q Consensus 57 ~L~~~l~~~~~~~--~~~~VLElGcGtGl--~sl~la~~g~~V~~tD~~~~~~~l~~~~~n~~~n-~~~~~~~~l~w~~~ 131 (241)
.|++.|.+..... ++.++||+|.|.-- +-+-.-..|.+.+++|+++ ..++.++.++..| ++.-. ..+.-...
T Consensus 63 ~laDLL~s~~g~~~~~~i~~LDIGvGAnCIYPliG~~eYgwrfvGseid~--~sl~sA~~ii~~N~~l~~~-I~lr~qk~ 139 (292)
T COG3129 63 HLADLLASTSGQIPGKNIRILDIGVGANCIYPLIGVHEYGWRFVGSEIDS--QSLSSAKAIISANPGLERA-IRLRRQKD 139 (292)
T ss_pred HHHHHHHhcCCCCCcCceEEEeeccCcccccccccceeecceeecCccCH--HHHHHHHHHHHcCcchhhh-eeEEeccC
Confidence 3555555433322 45578999888542 2222333477999999996 5999999999988 44211 11111111
Q ss_pred CcCc------CCCCCcEEEEcCCcCCC
Q 026274 132 DASI------FDLNPNIILGADVFYDA 152 (241)
Q Consensus 132 ~~~~------~~~~fDlIl~~dvly~~ 152 (241)
.... ..+.||..+|++++|..
T Consensus 140 ~~~if~giig~nE~yd~tlCNPPFh~s 166 (292)
T COG3129 140 SDAIFNGIIGKNERYDATLCNPPFHDS 166 (292)
T ss_pred ccccccccccccceeeeEecCCCcchh
Confidence 1111 23589999999999874
|
|
| >KOG4589 consensus Cell division protein FtsJ [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=95.80 E-value=0.14 Score=41.96 Aligned_cols=105 Identities=14% Similarity=0.066 Sum_probs=58.8
Q ss_pred CCCCCCeEEEecCCCCHHHHHHHHhC-C--EEEEEcCCCcHHHHHHHHHHHHHcCCceEEEEeecCCCC------cCcCC
Q 026274 67 YRFSGANVVELGAGTSLPGLVAAKVG-S--NVTLTDDSNRIEVLKNMRRVCEMNKLNCRVMGLTWGFLD------ASIFD 137 (241)
Q Consensus 67 ~~~~~~~VLElGcGtGl~sl~la~~g-~--~V~~tD~~~~~~~l~~~~~n~~~n~~~~~~~~l~w~~~~------~~~~~ 137 (241)
...++.+|||+||-.|.++..+-+.. . .|.++|+-. .. ...|.. -+...|..+.. +.+..
T Consensus 66 ~l~p~~~VlD~G~APGsWsQVavqr~~p~g~v~gVDllh---~~-------p~~Ga~-~i~~~dvtdp~~~~ki~e~lp~ 134 (232)
T KOG4589|consen 66 FLRPEDTVLDCGAAPGSWSQVAVQRVNPNGMVLGVDLLH---IE-------PPEGAT-IIQGNDVTDPETYRKIFEALPN 134 (232)
T ss_pred ccCCCCEEEEccCCCChHHHHHHHhhCCCceEEEEeeee---cc-------CCCCcc-cccccccCCHHHHHHHHHhCCC
Confidence 34468899999999999999988863 3 699999863 11 011111 01111332221 12234
Q ss_pred CCCcEEEEcCCcCCC-----ccHHHHHHHHHHHhhc-----CCCeEEEEEeeccCc
Q 026274 138 LNPNIILGADVFYDA-----SAFDDLFATITYLLQS-----SPGSVFITTYHNRSG 183 (241)
Q Consensus 138 ~~fDlIl~~dvly~~-----~~~~~ll~~~~~lL~~-----~~~~~~~~~~~~r~~ 183 (241)
.+.|+|+ ||...+. .++..+++.+..+|.- -|+|.|++-.-.-..
T Consensus 135 r~VdvVl-SDMapnaTGvr~~Dh~~~i~LC~s~l~~al~~~~p~g~fvcK~w~g~e 189 (232)
T KOG4589|consen 135 RPVDVVL-SDMAPNATGVRIRDHYRSIELCDSALLFALTLLIPNGSFVCKLWDGSE 189 (232)
T ss_pred CcccEEE-eccCCCCcCcchhhHHHHHHHHHHHHHHhhhhcCCCcEEEEEEecCCc
Confidence 5789888 5666664 3455555544333211 266777766544333
|
|
| >PF01269 Fibrillarin: Fibrillarin; InterPro: IPR000692 Fibrillarin is a component of a nucleolar small nuclear ribonucleoprotein (SnRNP), functioning in vivo in ribosomal RNA processing [, ] | Back alignment and domain information |
|---|
Probab=95.73 E-value=0.48 Score=39.79 Aligned_cols=150 Identities=16% Similarity=0.141 Sum_probs=84.8
Q ss_pred CCcceEEeccHH-HHHHHHHhc---cCCCCCCeEEEecCCCCHHHHHHHHh-CC--EEEEEcCCCcHHHHHHHHHHHHHc
Q 026274 45 EEYGLFVWPCSV-ILAEYVWQQ---RYRFSGANVVELGAGTSLPGLVAAKV-GS--NVTLTDDSNRIEVLKNMRRVCEMN 117 (241)
Q Consensus 45 ~~~g~~~W~~s~-~L~~~l~~~---~~~~~~~~VLElGcGtGl~sl~la~~-g~--~V~~tD~~~~~~~l~~~~~n~~~n 117 (241)
...+.++|.--. .|+..+... ....+|.+||=||+.+|..--.++.. |. .|.+++.++ ...+.+-.-+ ..
T Consensus 44 ~~~eYR~W~P~RSKLaAai~~Gl~~~~ik~gskVLYLGAasGTTVSHvSDIvg~~G~VYaVEfs~--r~~rdL~~la-~~ 120 (229)
T PF01269_consen 44 KKVEYRVWNPFRSKLAAAILKGLENIPIKPGSKVLYLGAASGTTVSHVSDIVGPDGVVYAVEFSP--RSMRDLLNLA-KK 120 (229)
T ss_dssp --EEEEEE-TTT-HHHHHHHTT-S--S--TT-EEEEETTTTSHHHHHHHHHHTTTSEEEEEESSH--HHHHHHHHHH-HH
T ss_pred CccceeecCchhhHHHHHHHcCccccCCCCCCEEEEecccCCCccchhhhccCCCCcEEEEEecc--hhHHHHHHHh-cc
Confidence 456788997532 455555433 24457899999999999776666664 42 899999996 3554444322 23
Q ss_pred CCceEEEEeecCCCCc-CcCCCCCcEEEEcCCcCCCccHHHHHHHHHHHhhcCCCeEEEEEeeccC------chhHHHH-
Q 026274 118 KLNCRVMGLTWGFLDA-SIFDLNPNIILGADVFYDASAFDDLFATITYLLQSSPGSVFITTYHNRS------GHHLIEF- 189 (241)
Q Consensus 118 ~~~~~~~~l~w~~~~~-~~~~~~fDlIl~~dvly~~~~~~~ll~~~~~lL~~~~~~~~~~~~~~r~------~~~~~~~- 189 (241)
..++-..--|...+.. ...-+..|+|++ |+- .+...+-++......|+ +||.+++....|. +...+..
T Consensus 121 R~NIiPIl~DAr~P~~Y~~lv~~VDvI~~-DVa-Qp~Qa~I~~~Na~~fLk--~gG~~~i~iKa~siD~t~~p~~vf~~e 196 (229)
T PF01269_consen 121 RPNIIPILEDARHPEKYRMLVEMVDVIFQ-DVA-QPDQARIAALNARHFLK--PGGHLIISIKARSIDSTADPEEVFAEE 196 (229)
T ss_dssp STTEEEEES-TTSGGGGTTTS--EEEEEE-E-S-STTHHHHHHHHHHHHEE--EEEEEEEEEEHHHH-SSSSHHHHHHHH
T ss_pred CCceeeeeccCCChHHhhcccccccEEEe-cCC-ChHHHHHHHHHHHhhcc--CCcEEEEEEecCcccCcCCHHHHHHHH
Confidence 3444333333332211 111237888884 444 56778888899999998 5666666654432 2222222
Q ss_pred --HHHHcCCEEEEE
Q 026274 190 --LMVKWGLKCVKL 201 (241)
Q Consensus 190 --~~~~~g~~~~~i 201 (241)
.+++.||+....
T Consensus 197 ~~~L~~~~~~~~e~ 210 (229)
T PF01269_consen 197 VKKLKEEGFKPLEQ 210 (229)
T ss_dssp HHHHHCTTCEEEEE
T ss_pred HHHHHHcCCChheE
Confidence 246678998776
|
It is associated with U3, U8 and U13 small nuclear RNAs in mammals [] and is similar to the yeast NOP1 protein []. Fibrillarin has a well conserved sequence of around 320 amino acids, and contains 3 domains, an N-terminal Gly/Arg-rich region; a central domain resembling other RNA-binding proteins and containing an RNP-2-like consensus sequence; and a C-terminal alpha-helical domain. An evolutionarily related pre-rRNA processing protein, which lacks the Gly/Arg-rich domain, has been found in various archaebacteria.; GO: 0003723 RNA binding, 0008168 methyltransferase activity, 0006364 rRNA processing, 0008033 tRNA processing; PDB: 3PLA_E 3ID6_C 3ID5_B 1NT2_A 3NVK_J 2NNW_B 3NVM_B 3NMU_J 1PRY_A 1G8A_A .... |
| >KOG0024 consensus Sorbitol dehydrogenase [Secondary metabolites biosynthesis, transport and catabolism] | Back alignment and domain information |
|---|
Probab=95.72 E-value=0.039 Score=48.64 Aligned_cols=144 Identities=21% Similarity=0.226 Sum_probs=86.8
Q ss_pred eEEEEeecCCCCCCceEEEEeccCcCCcceEEeccHHHHHHHHHhccCCCCCCeEEEecCC-CCHHHHHHHH-hCC-EEE
Q 026274 20 TVSQHYFVDESDKPSFSIAIIENMKEEYGLFVWPCSVILAEYVWQQRYRFSGANVVELGAG-TSLPGLVAAK-VGS-NVT 96 (241)
Q Consensus 20 ~~~~~~f~~~~~~~~~~i~i~~~~~~~~g~~~W~~s~~L~~~l~~~~~~~~~~~VLElGcG-tGl~sl~la~-~g~-~V~ 96 (241)
...+|+..+ ..+-.++.++.+.+-|..+=| +..+-...+......|.+||=+||| .|++.+..|+ .|+ +|+
T Consensus 125 ~la~y~~~~----~dfc~KLPd~vs~eeGAl~eP--LsV~~HAcr~~~vk~Gs~vLV~GAGPIGl~t~l~Aka~GA~~VV 198 (354)
T KOG0024|consen 125 TLAEYYVHP----ADFCYKLPDNVSFEEGALIEP--LSVGVHACRRAGVKKGSKVLVLGAGPIGLLTGLVAKAMGASDVV 198 (354)
T ss_pred ceEEEEEec----hHheeeCCCCCchhhcccccc--hhhhhhhhhhcCcccCCeEEEECCcHHHHHHHHHHHHcCCCcEE
Confidence 556666664 458888888888777776655 4444444555566789999999999 8988888887 587 899
Q ss_pred EEcCCCcHHHHHHHHHHHHHcCCceEEEEeecCCCCcCcCCCCCcEEEE---cCCcCCCccHHHHHHHHHHHhhcCCCeE
Q 026274 97 LTDDSNRIEVLKNMRRVCEMNKLNCRVMGLTWGFLDASIFDLNPNIILG---ADVFYDASAFDDLFATITYLLQSSPGSV 173 (241)
Q Consensus 97 ~tD~~~~~~~l~~~~~n~~~n~~~~~~~~l~w~~~~~~~~~~~fDlIl~---~dvly~~~~~~~ll~~~~~lL~~~~~~~ 173 (241)
++|+++ .-|+.+++ + |...... .-.....+...+...-.++ .|+.|+-.-.+.-+++.-..++. +|.+
T Consensus 199 i~d~~~--~Rle~Ak~-~---Ga~~~~~--~~~~~~~~~~~~~v~~~~g~~~~d~~~dCsG~~~~~~aai~a~r~-gGt~ 269 (354)
T KOG0024|consen 199 ITDLVA--NRLELAKK-F---GATVTDP--SSHKSSPQELAELVEKALGKKQPDVTFDCSGAEVTIRAAIKATRS-GGTV 269 (354)
T ss_pred EeecCH--HHHHHHHH-h---CCeEEee--ccccccHHHHHHHHHhhccccCCCeEEEccCchHHHHHHHHHhcc-CCEE
Confidence 999996 47777776 2 2221111 0000000000000111111 44445566677777777777763 4455
Q ss_pred EEEEe
Q 026274 174 FITTY 178 (241)
Q Consensus 174 ~~~~~ 178 (241)
+++.+
T Consensus 270 vlvg~ 274 (354)
T KOG0024|consen 270 VLVGM 274 (354)
T ss_pred EEecc
Confidence 55553
|
|
| >COG5459 Predicted rRNA methylase [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=95.53 E-value=0.029 Score=50.01 Aligned_cols=103 Identities=15% Similarity=0.183 Sum_probs=60.6
Q ss_pred CCCCCCeEEEecCCCCHHHHHHHHhCC---EEEEEcCCCcHHHHHHHHHHHHHcCCceEEEEeecCCCCc-----Cc-CC
Q 026274 67 YRFSGANVVELGAGTSLPGLVAAKVGS---NVTLTDDSNRIEVLKNMRRVCEMNKLNCRVMGLTWGFLDA-----SI-FD 137 (241)
Q Consensus 67 ~~~~~~~VLElGcGtGl~sl~la~~g~---~V~~tD~~~~~~~l~~~~~n~~~n~~~~~~~~l~w~~~~~-----~~-~~ 137 (241)
..++.++|||+|+|.|....++-..-. +++..+.|+ ++..+-..+..|-.. ...+|....- ++ ..
T Consensus 110 ~dfapqsiLDvG~GPgtgl~A~n~i~Pdl~sa~ile~sp---~lrkV~~tl~~nv~t---~~td~r~s~vt~dRl~lp~a 183 (484)
T COG5459 110 PDFAPQSILDVGAGPGTGLWALNDIWPDLKSAVILEASP---ALRKVGDTLAENVST---EKTDWRASDVTEDRLSLPAA 183 (484)
T ss_pred CCcCcchhhccCCCCchhhhhhcccCCCchhhhhhccCH---HHHHHHHHHHhhccc---ccCCCCCCccchhccCCCcc
Confidence 567788999999998865555544422 677788775 555444444444322 2245543221 11 12
Q ss_pred CCCcEEEEcCCcCCCccHHHHH---HHHHHHhhcCCCeEEEEE
Q 026274 138 LNPNIILGADVFYDASAFDDLF---ATITYLLQSSPGSVFITT 177 (241)
Q Consensus 138 ~~fDlIl~~dvly~~~~~~~ll---~~~~~lL~~~~~~~~~~~ 177 (241)
..|++++..|=+-+.....++. +.+..++. +|+.++++
T Consensus 184 d~ytl~i~~~eLl~d~~ek~i~~~ie~lw~l~~--~gg~lViv 224 (484)
T COG5459 184 DLYTLAIVLDELLPDGNEKPIQVNIERLWNLLA--PGGHLVIV 224 (484)
T ss_pred ceeehhhhhhhhccccCcchHHHHHHHHHHhcc--CCCeEEEE
Confidence 3689999888887766655554 44555555 35544443
|
|
| >PF02005 TRM: N2,N2-dimethylguanosine tRNA methyltransferase; InterPro: IPR002905 This enzyme 2 | Back alignment and domain information |
|---|
Probab=95.25 E-value=0.096 Score=47.59 Aligned_cols=99 Identities=22% Similarity=0.211 Sum_probs=65.0
Q ss_pred CCCeEEEecCCCCHHHHHHHHh--CC-EEEEEcCCCcHHHHHHHHHHHHHcCCce---EEEEeecCCCCcCcCCCCCcEE
Q 026274 70 SGANVVELGAGTSLPGLVAAKV--GS-NVTLTDDSNRIEVLKNMRRVCEMNKLNC---RVMGLTWGFLDASIFDLNPNII 143 (241)
Q Consensus 70 ~~~~VLElGcGtGl~sl~la~~--g~-~V~~tD~~~~~~~l~~~~~n~~~n~~~~---~~~~l~w~~~~~~~~~~~fDlI 143 (241)
.+.+|||-=||||+=|+-.++. +. +|++-|+++ ++++.+++|++.|++.. ++...|...... .....||+|
T Consensus 49 ~~~~~lDalaasGvR~iRy~~E~~~~~~v~~NDi~~--~a~~~i~~N~~~N~~~~~~~~v~~~DAn~ll~-~~~~~fD~I 125 (377)
T PF02005_consen 49 GPIRVLDALAASGVRGIRYAKELAGVDKVTANDISP--EAVELIKRNLELNGLEDERIEVSNMDANVLLY-SRQERFDVI 125 (377)
T ss_dssp S-EEEEETT-TTSHHHHHHHHH-SSECEEEEEES-H--HHHHHHHHHHHHCT-SGCCEEEEES-HHHHHC-HSTT-EEEE
T ss_pred CCceEEeccccccHHHHHHHHHcCCCCEEEEecCCH--HHHHHHHHhHhhccccCceEEEehhhHHHHhh-hccccCCEE
Confidence 3458999999999999999987 33 899999995 79999999999999865 333333332211 134589998
Q ss_pred EEcCCcCCCccHHHHHHHHHHHhhcCCCeEEEEE
Q 026274 144 LGADVFYDASAFDDLFATITYLLQSSPGSVFITT 177 (241)
Q Consensus 144 l~~dvly~~~~~~~ll~~~~~lL~~~~~~~~~~~ 177 (241)
=. |++ ....++++..-+.++ .||++.++
T Consensus 126 Dl-DPf---GSp~pfldsA~~~v~--~gGll~vT 153 (377)
T PF02005_consen 126 DL-DPF---GSPAPFLDSALQAVK--DGGLLCVT 153 (377)
T ss_dssp EE---S---S--HHHHHHHHHHEE--EEEEEEEE
T ss_pred Ee-CCC---CCccHhHHHHHHHhh--cCCEEEEe
Confidence 53 222 356788888888887 45665554
|
1.1.32 from EC uses S-adenosyl-L-methionine to methylate tRNA: |
| >COG2384 Predicted SAM-dependent methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=95.18 E-value=0.93 Score=38.00 Aligned_cols=122 Identities=13% Similarity=0.061 Sum_probs=75.5
Q ss_pred CCCeEEEecCCCCHHHHHHHHhCC--EEEEEcCCCcHHHHHHHHHHHHHcCCceEEEEeecCCCCcCcCC-CCCcEEEEc
Q 026274 70 SGANVVELGAGTSLPGLVAAKVGS--NVTLTDDSNRIEVLKNMRRVCEMNKLNCRVMGLTWGFLDASIFD-LNPNIILGA 146 (241)
Q Consensus 70 ~~~~VLElGcGtGl~sl~la~~g~--~V~~tD~~~~~~~l~~~~~n~~~n~~~~~~~~l~w~~~~~~~~~-~~fDlIl~~ 146 (241)
++.++.|+||-=|.+..+|-+.+. .+++.|+++ ..++.+.+|+..+++.-++ ..+-++...+... ..+|+|+-+
T Consensus 16 ~~~~iaDIGsDHAYLp~~Lv~~~~~~~~va~eV~~--gpl~~a~~~v~~~~l~~~i-~vr~~dgl~~l~~~d~~d~ivIA 92 (226)
T COG2384 16 QGARIADIGSDHAYLPIYLVKNNPASTAVAGEVVP--GPLESAIRNVKKNNLSERI-DVRLGDGLAVLELEDEIDVIVIA 92 (226)
T ss_pred cCCceeeccCchhHhHHHHHhcCCcceEEEeeccc--CHHHHHHHHHHhcCCcceE-EEeccCCccccCccCCcCEEEEe
Confidence 455699999999999999999764 799999997 4899999999999875332 2233343333332 368887754
Q ss_pred CCcCCCccHHHHHHHHHHHhhcCCCeEEEEEeeccCchhHHHHHHHHcCCEEEE
Q 026274 147 DVFYDASAFDDLFATITYLLQSSPGSVFITTYHNRSGHHLIEFLMVKWGLKCVK 200 (241)
Q Consensus 147 dvly~~~~~~~ll~~~~~lL~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~ 200 (241)
.+= -..+..+++.-..-|+ +-..+++. +.-+.. .++.++..++|....
T Consensus 93 GMG--G~lI~~ILee~~~~l~--~~~rlILQ-Pn~~~~-~LR~~L~~~~~~I~~ 140 (226)
T COG2384 93 GMG--GTLIREILEEGKEKLK--GVERLILQ-PNIHTY-ELREWLSANSYEIKA 140 (226)
T ss_pred CCc--HHHHHHHHHHhhhhhc--CcceEEEC-CCCCHH-HHHHHHHhCCceeee
Confidence 321 1245555555555553 11233433 222233 344455667766543
|
|
| >PF04445 SAM_MT: Putative SAM-dependent methyltransferase; InterPro: IPR007536 This family of proteins is functionally uncharacterised | Back alignment and domain information |
|---|
Probab=95.00 E-value=0.096 Score=44.34 Aligned_cols=93 Identities=17% Similarity=0.121 Sum_probs=46.0
Q ss_pred CeEEEecCCCCHHHHHHHHhCCEEEEEcCCCcH-HHHHHHHHHHHHcC-C------ceEEEEeecCCCCcCcCCCCCcEE
Q 026274 72 ANVVELGAGTSLPGLVAAKVGSNVTLTDDSNRI-EVLKNMRRVCEMNK-L------NCRVMGLTWGFLDASIFDLNPNII 143 (241)
Q Consensus 72 ~~VLElGcGtGl~sl~la~~g~~V~~tD~~~~~-~~l~~~~~n~~~n~-~------~~~~~~l~w~~~~~~~~~~~fDlI 143 (241)
.+|||.-||.|.=++.+|..|++|++++.|+.- .+++..-+++..+. . ++++...+..+... ..+.+||+|
T Consensus 77 ~~VLDaTaGLG~Da~vlA~~G~~V~~lErspvia~Ll~dGL~r~~~~~~~~~~~~~ri~l~~~d~~~~L~-~~~~s~DVV 155 (234)
T PF04445_consen 77 PSVLDATAGLGRDAFVLASLGCKVTGLERSPVIAALLKDGLKRAQQDPELLAEAMRRIQLIHGDALEYLR-QPDNSFDVV 155 (234)
T ss_dssp --EEETT-TTSHHHHHHHHHT--EEEEE--HHHHHHHHHHHHHHHHSTTTHHHHHHHEEEEES-CCCHCC-CHSS--SEE
T ss_pred CEEEECCCcchHHHHHHHccCCeEEEEECCHHHHHHHHHHHHHHHhCcHhHHHHHhCCEEEcCCHHHHHh-hcCCCCCEE
Confidence 389999999999999999999999999999620 12222222333222 1 35555555444433 345689999
Q ss_pred EEcCCcCCCccHH----HHHHHHHHHh
Q 026274 144 LGADVFYDASAFD----DLFATITYLL 166 (241)
Q Consensus 144 l~~dvly~~~~~~----~ll~~~~~lL 166 (241)
.. |++|-...-. .=++.++.+.
T Consensus 156 Y~-DPMFp~~~ksa~vkk~m~~lr~L~ 181 (234)
T PF04445_consen 156 YF-DPMFPERKKSALVKKEMRVLRDLA 181 (234)
T ss_dssp EE---S-----TTTT-SHHHHHHHHHH
T ss_pred EE-CCCCCCcccccccccchHHHHHhh
Confidence 96 7777543322 2345555554
|
; PDB: 2PGX_A 2OYR_A 2R6Z_A 2PKW_A. |
| >KOG2078 consensus tRNA modification enzyme [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=94.94 E-value=0.047 Score=49.73 Aligned_cols=94 Identities=19% Similarity=0.197 Sum_probs=67.2
Q ss_pred eEEEEeccC---cCCcceEEeccHHHHHHHHHhccCCCCCCeEEEecCCCCHHHHHHHHhCCEEEEEcCCCcHHHHHHHH
Q 026274 35 FSIAIIENM---KEEYGLFVWPCSVILAEYVWQQRYRFSGANVVELGAGTSLPGLVAAKVGSNVTLTDDSNRIEVLKNMR 111 (241)
Q Consensus 35 ~~i~i~~~~---~~~~g~~~W~~s~~L~~~l~~~~~~~~~~~VLElGcGtGl~sl~la~~g~~V~~tD~~~~~~~l~~~~ 111 (241)
+...+++.- ..++|-.-|.+-+..-+--... -...|..|-|+-||.|-.++-+++.|+.|++-|.++ ++++.++
T Consensus 212 ~vtevre~~~~Fk~DfskVYWnsRL~~Eherlsg-~fk~gevv~D~FaGvGPfa~Pa~kK~crV~aNDLNp--esik~Lk 288 (495)
T KOG2078|consen 212 LVTEVREGGERFKFDFSKVYWNSRLSHEHERLSG-LFKPGEVVCDVFAGVGPFALPAAKKGCRVYANDLNP--ESIKWLK 288 (495)
T ss_pred eEEEEecCCeeEEEecceEEeeccchhHHHHHhh-ccCCcchhhhhhcCcCccccchhhcCcEEEecCCCH--HHHHHHH
Confidence 444444443 2367778899544433332222 233577899999999999999999999999999995 7999999
Q ss_pred HHHHHcCCc---eEEEEeecCCC
Q 026274 112 RVCEMNKLN---CRVMGLTWGFL 131 (241)
Q Consensus 112 ~n~~~n~~~---~~~~~l~w~~~ 131 (241)
.|+..|.+. +.+..+|..++
T Consensus 289 ~ni~lNkv~~~~iei~Nmda~~F 311 (495)
T KOG2078|consen 289 ANIKLNKVDPSAIEIFNMDAKDF 311 (495)
T ss_pred HhccccccchhheeeecccHHHH
Confidence 999999874 44555554443
|
|
| >KOG2352 consensus Predicted spermine/spermidine synthase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=94.80 E-value=0.19 Score=46.65 Aligned_cols=93 Identities=16% Similarity=0.220 Sum_probs=61.4
Q ss_pred CeEEEecCCCCHHHHHHHHhCC-EEEEEcCCCcHHHHHHHHHHHHHcCCceEEEEeecCCCCcCcCCCCCcEEEEcCCc-
Q 026274 72 ANVVELGAGTSLPGLVAAKVGS-NVTLTDDSNRIEVLKNMRRVCEMNKLNCRVMGLTWGFLDASIFDLNPNIILGADVF- 149 (241)
Q Consensus 72 ~~VLElGcGtGl~sl~la~~g~-~V~~tD~~~~~~~l~~~~~n~~~n~~~~~~~~l~w~~~~~~~~~~~fDlIl~~dvl- 149 (241)
-++|.+|||.--++..+-+-|. .|+.+|+|+. .+......|+ .......+...+.... ...+++||+|+.-..+
T Consensus 50 ~~~l~lGCGNS~l~e~ly~~G~~dI~~iD~S~V-~V~~m~~~~~-~~~~~~~~~~~d~~~l--~fedESFdiVIdkGtlD 125 (482)
T KOG2352|consen 50 FKILQLGCGNSELSEHLYKNGFEDITNIDSSSV-VVAAMQVRNA-KERPEMQMVEMDMDQL--VFEDESFDIVIDKGTLD 125 (482)
T ss_pred ceeEeecCCCCHHHHHHHhcCCCCceeccccHH-HHHHHHhccc-cCCcceEEEEecchhc--cCCCcceeEEEecCccc
Confidence 4899999999999999999888 7999999973 2333445554 2333344444444332 3345689998854332
Q ss_pred ---------CCCccHHHHHHHHHHHhhc
Q 026274 150 ---------YDASAFDDLFATITYLLQS 168 (241)
Q Consensus 150 ---------y~~~~~~~ll~~~~~lL~~ 168 (241)
++......-+..+++++++
T Consensus 126 al~~de~a~~~~~~v~~~~~eVsrvl~~ 153 (482)
T KOG2352|consen 126 ALFEDEDALLNTAHVSNMLDEVSRVLAP 153 (482)
T ss_pred cccCCchhhhhhHHhhHHHhhHHHHhcc
Confidence 2233455667888999984
|
|
| >PF00145 DNA_methylase: C-5 cytosine-specific DNA methylase; InterPro: IPR001525 C-5 cytosine-specific DNA methylases (2 | Back alignment and domain information |
|---|
Probab=94.79 E-value=0.6 Score=40.64 Aligned_cols=70 Identities=14% Similarity=0.104 Sum_probs=45.6
Q ss_pred eEEEecCCCCHHHHHHHHhCC-EEEEEcCCCcHHHHHHHHHHHHHcCCceEEEEeecCCCCcCcCCCCCcEEEEcCCcC
Q 026274 73 NVVELGAGTSLPGLVAAKVGS-NVTLTDDSNRIEVLKNMRRVCEMNKLNCRVMGLTWGFLDASIFDLNPNIILGADVFY 150 (241)
Q Consensus 73 ~VLElGcGtGl~sl~la~~g~-~V~~tD~~~~~~~l~~~~~n~~~n~~~~~~~~l~w~~~~~~~~~~~fDlIl~~dvly 150 (241)
+++||-||.|.+++.+.+.|. -|.++|+++ .+.+..+.|.. .....|..+......+..+|+++++.+.-
T Consensus 2 ~~~dlFsG~Gg~~~g~~~ag~~~~~a~e~~~--~a~~~y~~N~~------~~~~~Di~~~~~~~l~~~~D~l~ggpPCQ 72 (335)
T PF00145_consen 2 KVIDLFSGIGGFSLGLEQAGFEVVWAVEIDP--DACETYKANFP------EVICGDITEIDPSDLPKDVDLLIGGPPCQ 72 (335)
T ss_dssp EEEEET-TTTHHHHHHHHTTEEEEEEEESSH--HHHHHHHHHHT------EEEESHGGGCHHHHHHHT-SEEEEE---T
T ss_pred cEEEEccCccHHHHHHHhcCcEEEEEeecCH--HHHHhhhhccc------ccccccccccccccccccceEEEeccCCc
Confidence 699999999999999999997 589999995 57777777776 22333333322111111599999887653
|
1.1.37 from EC) (C5 Mtase) are enzymes that specifically methylate the C-5 carbon of cytosines in DNA to produce C5-methylcytosine [, , ]. In mammalian cells, cytosine-specific methyltransferases methylate certain CpG sequences, which are believed to modulate gene expression and cell differentiation. In bacteria, these enzymes are a component of restriction-modification systems and serve as valuable tools for the manipulation of DNA [, ]. The structure of HhaI methyltransferase (M.HhaI) has been resolved to 2.5 A []: the molecule folds into 2 domains - a larger catalytic domain containing catalytic and cofactor binding sites, and a smaller DNA recognition domain.; GO: 0003677 DNA binding, 0006306 DNA methylation; PDB: 4DA4_A 3PT6_B 3AV6_A 3AV5_A 3AV4_A 3PT9_A 1DCT_A 3LX6_A 3ME5_A 2QRV_A .... |
| >PF13578 Methyltransf_24: Methyltransferase domain; PDB: 3SSO_A 3SSN_C 3SSM_D | Back alignment and domain information |
|---|
Probab=94.70 E-value=0.0041 Score=45.58 Aligned_cols=97 Identities=16% Similarity=0.076 Sum_probs=31.1
Q ss_pred EEecCCCCHHHHHHHHh----C-CEEEEEcCCCcHHHHHHHHHHHHHcCC--ceEEEEeecCCCCcCcCCCCCcEEEEcC
Q 026274 75 VELGAGTSLPGLVAAKV----G-SNVTLTDDSNRIEVLKNMRRVCEMNKL--NCRVMGLTWGFLDASIFDLNPNIILGAD 147 (241)
Q Consensus 75 LElGcGtGl~sl~la~~----g-~~V~~tD~~~~~~~l~~~~~n~~~n~~--~~~~~~l~w~~~~~~~~~~~fDlIl~~d 147 (241)
||+|+..|..++.+++. + .+++++|..+ . .+..+++++..+. ++++...+..+........++|+|+. |
T Consensus 1 lEiG~~~G~st~~l~~~~~~~~~~~~~~vD~~~--~-~~~~~~~~~~~~~~~~~~~~~g~s~~~l~~~~~~~~dli~i-D 76 (106)
T PF13578_consen 1 LEIGTYSGYSTLWLASALRDNGRGKLYSVDPFP--G-DEQAQEIIKKAGLSDRVEFIQGDSPDFLPSLPDGPIDLIFI-D 76 (106)
T ss_dssp --------------------------EEEESS---------------GGG-BTEEEEES-THHHHHHHHH--EEEEEE-E
T ss_pred CccccccccccccccccccccccCCEEEEECCC--c-ccccchhhhhcCCCCeEEEEEcCcHHHHHHcCCCCEEEEEE-C
Confidence 79999999888777663 2 2799999996 1 3334444443332 34444433322212222358898884 3
Q ss_pred CcCCCccHHHHHHHHHHHhhcCCCeEEEEE
Q 026274 148 VFYDASAFDDLFATITYLLQSSPGSVFITT 177 (241)
Q Consensus 148 vly~~~~~~~ll~~~~~lL~~~~~~~~~~~ 177 (241)
.-+..+....-++.+...|+ +++++++.
T Consensus 77 g~H~~~~~~~dl~~~~~~l~--~ggviv~d 104 (106)
T PF13578_consen 77 GDHSYEAVLRDLENALPRLA--PGGVIVFD 104 (106)
T ss_dssp S---HHHHHHHHHHHGGGEE--EEEEEEEE
T ss_pred CCCCHHHHHHHHHHHHHHcC--CCeEEEEe
Confidence 32223344445555566665 66766653
|
|
| >COG4262 Predicted spermidine synthase with an N-terminal membrane domain [General function prediction only] | Back alignment and domain information |
|---|
Probab=94.68 E-value=0.43 Score=43.04 Aligned_cols=126 Identities=12% Similarity=0.059 Sum_probs=75.1
Q ss_pred CCeEEEecCCCCHHHHHHHHhC-C-EEEEEcCCCcHHHHHHHHHHHHH---cC-----CceEEEEeecCCCCcCcCCCCC
Q 026274 71 GANVVELGAGTSLPGLVAAKVG-S-NVTLTDDSNRIEVLKNMRRVCEM---NK-----LNCRVMGLTWGFLDASIFDLNP 140 (241)
Q Consensus 71 ~~~VLElGcGtGl~sl~la~~g-~-~V~~tD~~~~~~~l~~~~~n~~~---n~-----~~~~~~~l~w~~~~~~~~~~~f 140 (241)
-.+||=||-|-|+....+.+.- . +++.+|.+| +|++.+++|.-. |+ .++++..-|..++... ....|
T Consensus 290 a~~vLvlGGGDGLAlRellkyP~~~qI~lVdLDP--~miela~~~~vlr~~N~~sf~dpRv~Vv~dDAf~wlr~-a~~~f 366 (508)
T COG4262 290 ARSVLVLGGGDGLALRELLKYPQVEQITLVDLDP--RMIELASHATVLRALNQGSFSDPRVTVVNDDAFQWLRT-AADMF 366 (508)
T ss_pred cceEEEEcCCchHHHHHHHhCCCcceEEEEecCH--HHHHHhhhhhHhhhhccCCccCCeeEEEeccHHHHHHh-hcccc
Confidence 3579999999999999999874 3 899999995 799999876433 32 2344444443333222 23489
Q ss_pred cEEEEcCCcCCCcc-----HHHHHHHHHHHhhcCCCeEEEEE----eeccCchhHHHHHHHHcCCEEEEE
Q 026274 141 NIILGADVFYDASA-----FDDLFATITYLLQSSPGSVFITT----YHNRSGHHLIEFLMVKWGLKCVKL 201 (241)
Q Consensus 141 DlIl~~dvly~~~~-----~~~ll~~~~~lL~~~~~~~~~~~----~~~r~~~~~~~~~~~~~g~~~~~i 201 (241)
|.||--=.=-..+. -.++...+++.|+ ++|++++- |..+.....+..-.++.|+.+...
T Consensus 367 D~vIVDl~DP~tps~~rlYS~eFY~ll~~~l~--e~Gl~VvQags~y~tp~vfw~i~aTik~AG~~~~Py 434 (508)
T COG4262 367 DVVIVDLPDPSTPSIGRLYSVEFYRLLSRHLA--ETGLMVVQAGSPYFTPRVFWRIDATIKSAGYRVWPY 434 (508)
T ss_pred cEEEEeCCCCCCcchhhhhhHHHHHHHHHhcC--cCceEEEecCCCccCCceeeeehhHHHhCcceeeee
Confidence 99884211111112 2345556667776 55655543 222323333344467888776543
|
|
| >KOG3178 consensus Hydroxyindole-O-methyltransferase and related SAM-dependent methyltransferases [General function prediction only] | Back alignment and domain information |
|---|
Probab=94.37 E-value=0.19 Score=44.76 Aligned_cols=95 Identities=11% Similarity=0.002 Sum_probs=62.1
Q ss_pred CeEEEecCCCCHHHHHHHHhCCEEEEEcCCCcHHHHHHHHHHHHHcCCceEEEEeecCCCCcCcCCCCCcEEEEcCCcCC
Q 026274 72 ANVVELGAGTSLPGLVAAKVGSNVTLTDDSNRIEVLKNMRRVCEMNKLNCRVMGLTWGFLDASIFDLNPNIILGADVFYD 151 (241)
Q Consensus 72 ~~VLElGcGtGl~sl~la~~g~~V~~tD~~~~~~~l~~~~~n~~~n~~~~~~~~l~w~~~~~~~~~~~fDlIl~~dvly~ 151 (241)
...+|+|.|.|.+.-.+.+.-.+|-+++.+. |.+++.+.. .. .+ +.... ++..... .+-|+|+.-=|+++
T Consensus 179 ~~avDvGgGiG~v~k~ll~~fp~ik~infdl-p~v~~~a~~-~~-~g--V~~v~---gdmfq~~--P~~daI~mkWiLhd 248 (342)
T KOG3178|consen 179 NVAVDVGGGIGRVLKNLLSKYPHIKGINFDL-PFVLAAAPY-LA-PG--VEHVA---GDMFQDT--PKGDAIWMKWILHD 248 (342)
T ss_pred ceEEEcCCcHhHHHHHHHHhCCCCceeecCH-HHHHhhhhh-hc-CC--cceec---ccccccC--CCcCeEEEEeeccc
Confidence 5789999999966555555655788888886 344444433 32 33 32222 3333332 25779999999987
Q ss_pred --CccHHHHHHHHHHHhhcCCCeEEEEE
Q 026274 152 --ASAFDDLFATITYLLQSSPGSVFITT 177 (241)
Q Consensus 152 --~~~~~~ll~~~~~lL~~~~~~~~~~~ 177 (241)
.++...+++.++..|++ +|.+++..
T Consensus 249 wtDedcvkiLknC~~sL~~-~GkIiv~E 275 (342)
T KOG3178|consen 249 WTDEDCVKILKNCKKSLPP-GGKIIVVE 275 (342)
T ss_pred CChHHHHHHHHHHHHhCCC-CCEEEEEe
Confidence 56788999999999974 44455544
|
|
| >KOG2798 consensus Putative trehalase [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=94.15 E-value=0.68 Score=40.87 Aligned_cols=32 Identities=19% Similarity=0.073 Sum_probs=28.2
Q ss_pred CCeEEEecCCCCHHHHHHHHhCCEEEEEcCCC
Q 026274 71 GANVVELGAGTSLPGLVAAKVGSNVTLTDDSN 102 (241)
Q Consensus 71 ~~~VLElGcGtGl~sl~la~~g~~V~~tD~~~ 102 (241)
..+||==|||.|.++..+|..|.++-+-+.|-
T Consensus 151 ki~iLvPGaGlGRLa~dla~~G~~~qGNEfSy 182 (369)
T KOG2798|consen 151 KIRILVPGAGLGRLAYDLACLGFKCQGNEFSY 182 (369)
T ss_pred CceEEecCCCchhHHHHHHHhcccccccHHHH
Confidence 45799999999999999999999888887773
|
|
| >COG1867 TRM1 N2,N2-dimethylguanosine tRNA methyltransferase [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=93.66 E-value=0.14 Score=45.90 Aligned_cols=90 Identities=17% Similarity=0.173 Sum_probs=62.1
Q ss_pred CCeEEEecCCCCHHHHHHHHh-CC-EEEEEcCCCcHHHHHHHHHHHHHc-CCceEEEEeecCCCCcCcCCCCCcEEEEcC
Q 026274 71 GANVVELGAGTSLPGLVAAKV-GS-NVTLTDDSNRIEVLKNMRRVCEMN-KLNCRVMGLTWGFLDASIFDLNPNIILGAD 147 (241)
Q Consensus 71 ~~~VLElGcGtGl~sl~la~~-g~-~V~~tD~~~~~~~l~~~~~n~~~n-~~~~~~~~l~w~~~~~~~~~~~fDlIl~~d 147 (241)
..+|+|-=||||+=|+-.|.. +. +|++-|+|+ ++.+.+++|++.| +.+..+..-|........ ...||+|= -|
T Consensus 53 ~~~v~DalsatGiRgIRya~E~~~~~v~lNDisp--~Avelik~Nv~~N~~~~~~v~n~DAN~lm~~~-~~~fd~ID-iD 128 (380)
T COG1867 53 PKRVLDALSATGIRGIRYAVETGVVKVVLNDISP--KAVELIKENVRLNSGEDAEVINKDANALLHEL-HRAFDVID-ID 128 (380)
T ss_pred CeEEeecccccchhHhhhhhhcCccEEEEccCCH--HHHHHHHHHHHhcCcccceeecchHHHHHHhc-CCCccEEe-cC
Confidence 678999999999999999985 55 899999995 7999999999999 445444433332221111 24788873 12
Q ss_pred CcCCCccHHHHHHHHHHHhh
Q 026274 148 VFYDASAFDDLFATITYLLQ 167 (241)
Q Consensus 148 vly~~~~~~~ll~~~~~lL~ 167 (241)
++ ....|+++...+..+
T Consensus 129 PF---GSPaPFlDaA~~s~~ 145 (380)
T COG1867 129 PF---GSPAPFLDAALRSVR 145 (380)
T ss_pred CC---CCCchHHHHHHHHhh
Confidence 22 245566666666665
|
|
| >PF07091 FmrO: Ribosomal RNA methyltransferase (FmrO); PDB: 3LCU_A 3LCV_B 3FRH_A 3FRI_A 3B89_A 3FZG_A | Back alignment and domain information |
|---|
Probab=93.48 E-value=0.39 Score=41.04 Aligned_cols=104 Identities=10% Similarity=0.008 Sum_probs=60.9
Q ss_pred CCeEEEecCCCCHHHHHHHHh--CCEEEEEcCCCcHHHHHHHHHHHHHcCCceEEEEeecCCCCcCcCCCCCcEEEEcCC
Q 026274 71 GANVVELGAGTSLPGLVAAKV--GSNVTLTDDSNRIEVLKNMRRVCEMNKLNCRVMGLTWGFLDASIFDLNPNIILGADV 148 (241)
Q Consensus 71 ~~~VLElGcGtGl~sl~la~~--g~~V~~tD~~~~~~~l~~~~~n~~~n~~~~~~~~l~w~~~~~~~~~~~fDlIl~~dv 148 (241)
..+|+|||||.=-+++..... ++.+++.|++. .+++.+..-...-+.+.++...|.-. .......|+.+.-=+
T Consensus 106 p~sVlDigCGlNPlalp~~~~~~~a~Y~a~DID~--~~ve~l~~~l~~l~~~~~~~v~Dl~~---~~~~~~~DlaLllK~ 180 (251)
T PF07091_consen 106 PDSVLDIGCGLNPLALPWMPEAPGATYIAYDIDS--QLVEFLNAFLAVLGVPHDARVRDLLS---DPPKEPADLALLLKT 180 (251)
T ss_dssp -SEEEEET-TTCHHHHHTTTSSTT-EEEEEESBH--HHHHHHHHHHHHTT-CEEEEEE-TTT---SHTTSEESEEEEET-
T ss_pred CchhhhhhccCCceehhhcccCCCcEEEEEeCCH--HHHHHHHHHHHhhCCCcceeEeeeec---cCCCCCcchhhHHHH
Confidence 568999999988777755544 46999999995 69999988888778777766554432 233456899886544
Q ss_pred cCCCcc--HHHHHHHHHHHhhcCCCeEEEEEeeccCc
Q 026274 149 FYDASA--FDDLFATITYLLQSSPGSVFITTYHNRSG 183 (241)
Q Consensus 149 ly~~~~--~~~ll~~~~~lL~~~~~~~~~~~~~~r~~ 183 (241)
+.-.+. -...++.+..+ ..-.++++++.|+.
T Consensus 181 lp~le~q~~g~g~~ll~~~----~~~~~vVSfPtrSL 213 (251)
T PF07091_consen 181 LPCLERQRRGAGLELLDAL----RSPHVVVSFPTRSL 213 (251)
T ss_dssp HHHHHHHSTTHHHHHHHHS----CESEEEEEEES---
T ss_pred HHHHHHHhcchHHHHHHHh----CCCeEEEecccccc
Confidence 432111 11222233333 23466777776554
|
|
| >KOG1122 consensus tRNA and rRNA cytosine-C5-methylase (nucleolar protein NOL1/NOP2) [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=93.45 E-value=2.3 Score=39.01 Aligned_cols=131 Identities=13% Similarity=0.125 Sum_probs=82.3
Q ss_pred CCCCCeEEEecCCCCHHHHHHHHh-C--CEEEEEcCCCcHHHHHHHHHHHHHcCCce-EEEEeecCCCCcCcCCCCCcEE
Q 026274 68 RFSGANVVELGAGTSLPGLVAAKV-G--SNVTLTDDSNRIEVLKNMRRVCEMNKLNC-RVMGLTWGFLDASIFDLNPNII 143 (241)
Q Consensus 68 ~~~~~~VLElGcGtGl~sl~la~~-g--~~V~~tD~~~~~~~l~~~~~n~~~n~~~~-~~~~l~w~~~~~~~~~~~fDlI 143 (241)
+.+|.||||+.|-.|-=..++|.+ . ..|++.|.+. .-+..++.|+..-|.+- -+..+|-.++....+..+||-|
T Consensus 239 Pq~gERIlDmcAAPGGKTt~IAalMkn~G~I~AnD~n~--~r~~~l~~n~~rlGv~ntiv~n~D~~ef~~~~~~~~fDRV 316 (460)
T KOG1122|consen 239 PQPGERILDMCAAPGGKTTHIAALMKNTGVIFANDSNE--NRLKSLKANLHRLGVTNTIVSNYDGREFPEKEFPGSFDRV 316 (460)
T ss_pred CCCCCeecchhcCCCchHHHHHHHHcCCceEEecccch--HHHHHHHHHHHHhCCCceEEEccCcccccccccCccccee
Confidence 347889999999988655555554 2 2799999996 48889999999888753 3344555444333444589988
Q ss_pred E----EcC--CcCCCc----------------cHHHHHHHHHHHhhcCCCeEEEEEeec--cCchhHHHHHHHHc-CCEE
Q 026274 144 L----GAD--VFYDAS----------------AFDDLFATITYLLQSSPGSVFITTYHN--RSGHHLIEFLMVKW-GLKC 198 (241)
Q Consensus 144 l----~~d--vly~~~----------------~~~~ll~~~~~lL~~~~~~~~~~~~~~--r~~~~~~~~~~~~~-g~~~ 198 (241)
+ ||- +++-+. ....|+....+++++ +|.++|..+.. ......+.++++++ .++.
T Consensus 317 LLDAPCSGtgvi~K~~~vkt~k~~~di~~~~~LQr~LllsAi~lv~~-GGvLVYSTCSI~~~ENE~vV~yaL~K~p~~kL 395 (460)
T KOG1122|consen 317 LLDAPCSGTGVISKDQSVKTNKTVKDILRYAHLQRELLLSAIDLVKA-GGVLVYSTCSITVEENEAVVDYALKKRPEVKL 395 (460)
T ss_pred eecCCCCCCcccccccccccchhHHHHHHhHHHHHHHHHHHHhhccC-CcEEEEEeeecchhhhHHHHHHHHHhCCceEe
Confidence 7 333 444432 456677777778873 33345544322 22344556666666 5555
Q ss_pred EEE
Q 026274 199 VKL 201 (241)
Q Consensus 199 ~~i 201 (241)
...
T Consensus 396 ~p~ 398 (460)
T KOG1122|consen 396 VPT 398 (460)
T ss_pred ccc
Confidence 443
|
|
| >PRK09424 pntA NAD(P) transhydrogenase subunit alpha; Provisional | Back alignment and domain information |
|---|
Probab=93.30 E-value=1 Score=42.66 Aligned_cols=43 Identities=30% Similarity=0.428 Sum_probs=34.4
Q ss_pred CCCCCeEEEecCC-CCHHHHHHHH-hCCEEEEEcCCCcHHHHHHHHH
Q 026274 68 RFSGANVVELGAG-TSLPGLVAAK-VGSNVTLTDDSNRIEVLKNMRR 112 (241)
Q Consensus 68 ~~~~~~VLElGcG-tGl~sl~la~-~g~~V~~tD~~~~~~~l~~~~~ 112 (241)
...+.+|+=+||| .|+.++..|+ +|+.|+++|.++ +.++.++.
T Consensus 162 ~~pg~kVlViGaG~iGL~Ai~~Ak~lGA~V~a~D~~~--~rle~aes 206 (509)
T PRK09424 162 KVPPAKVLVIGAGVAGLAAIGAAGSLGAIVRAFDTRP--EVAEQVES 206 (509)
T ss_pred CcCCCEEEEECCcHHHHHHHHHHHHCCCEEEEEeCCH--HHHHHHHH
Confidence 3468899999999 7888888887 599999999995 46655554
|
|
| >TIGR00675 dcm DNA-methyltransferase (dcm) | Back alignment and domain information |
|---|
Probab=92.90 E-value=2.7 Score=37.14 Aligned_cols=120 Identities=17% Similarity=0.063 Sum_probs=65.8
Q ss_pred EEEecCCCCHHHHHHHHhCCE-EEEEcCCCcHHHHHHHHHHHHHcCCceEEEEeecCCCCcCcCCCCCcEEEEcCCcCCC
Q 026274 74 VVELGAGTSLPGLVAAKVGSN-VTLTDDSNRIEVLKNMRRVCEMNKLNCRVMGLTWGFLDASIFDLNPNIILGADVFYDA 152 (241)
Q Consensus 74 VLElGcGtGl~sl~la~~g~~-V~~tD~~~~~~~l~~~~~n~~~n~~~~~~~~l~w~~~~~~~~~~~fDlIl~~dvly~~ 152 (241)
|+||-||.|-+++.+.+.|.+ +.+.|+++ .+.+..+.|.... +...|..+...... ..+|+++++.+.-..
T Consensus 1 vidLF~G~GG~~~Gl~~aG~~~~~a~e~~~--~a~~ty~~N~~~~-----~~~~Di~~~~~~~~-~~~dvl~gg~PCq~f 72 (315)
T TIGR00675 1 FIDLFAGIGGIRLGFEQAGFKCVFASEIDK--YAQKTYEANFGNK-----VPFGDITKISPSDI-PDFDILLGGFPCQPF 72 (315)
T ss_pred CEEEecCccHHHHHHHHcCCeEEEEEeCCH--HHHHHHHHhCCCC-----CCccChhhhhhhhC-CCcCEEEecCCCccc
Confidence 689999999999999999986 56799995 5777777765421 11122222211111 258999887654321
Q ss_pred ----------ccHHHHHHHHHHHhhcCCCeEEEEEeecc-----C--chhHHHHHHHHcCCEEEEE
Q 026274 153 ----------SAFDDLFATITYLLQSSPGSVFITTYHNR-----S--GHHLIEFLMVKWGLKCVKL 201 (241)
Q Consensus 153 ----------~~~~~ll~~~~~lL~~~~~~~~~~~~~~r-----~--~~~~~~~~~~~~g~~~~~i 201 (241)
+.-..|+..+.++++.-.-.+|++.--.. . ....+...++..|+.+...
T Consensus 73 S~ag~~~~~~d~r~~L~~~~~r~i~~~~P~~~v~ENV~~l~~~~~~~~~~~i~~~l~~~GY~v~~~ 138 (315)
T TIGR00675 73 SIAGKRKGFEDTRGTLFFEIVRILKEKKPKFFLLENVKGLVSHDKGRTFKVIIETLEELGYKVYYK 138 (315)
T ss_pred chhcccCCCCCchhhHHHHHHHHHhhcCCCEEEeeccHHHHhcccchHHHHHHHHHHhCCCEEEEE
Confidence 12224555555555432223444442211 1 1122223356789887553
|
All proteins in this family for which functions are known are DNA-cytosine methyltransferases. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). |
| >COG1064 AdhP Zn-dependent alcohol dehydrogenases [General function prediction only] | Back alignment and domain information |
|---|
Probab=92.74 E-value=0.85 Score=40.80 Aligned_cols=96 Identities=17% Similarity=0.113 Sum_probs=56.9
Q ss_pred CCCCCCeEEEecCC-CCHHHHHHHH-hCCEEEEEcCCCcHHHHHHHHHHHHHcCCceEEEEeecCCCC-cCcCCCCCcEE
Q 026274 67 YRFSGANVVELGAG-TSLPGLVAAK-VGSNVTLTDDSNRIEVLKNMRRVCEMNKLNCRVMGLTWGFLD-ASIFDLNPNII 143 (241)
Q Consensus 67 ~~~~~~~VLElGcG-tGl~sl~la~-~g~~V~~tD~~~~~~~l~~~~~n~~~n~~~~~~~~l~w~~~~-~~~~~~~fDlI 143 (241)
...+|++|+=.|+| .|..++.+|+ +|++|++.|.++ +-++.+++ -+.+. ..++.+.. .+...+.||+|
T Consensus 163 ~~~pG~~V~I~G~GGlGh~avQ~Aka~ga~Via~~~~~--~K~e~a~~----lGAd~---~i~~~~~~~~~~~~~~~d~i 233 (339)
T COG1064 163 NVKPGKWVAVVGAGGLGHMAVQYAKAMGAEVIAITRSE--EKLELAKK----LGADH---VINSSDSDALEAVKEIADAI 233 (339)
T ss_pred CCCCCCEEEEECCcHHHHHHHHHHHHcCCeEEEEeCCh--HHHHHHHH----hCCcE---EEEcCCchhhHHhHhhCcEE
Confidence 44578999999998 4466777787 799999999996 35555554 22222 22333111 11111248888
Q ss_pred EEcCCcCCCccHHHHHHHHHHHhhcCCCeEEEEEee
Q 026274 144 LGADVFYDASAFDDLFATITYLLQSSPGSVFITTYH 179 (241)
Q Consensus 144 l~~dvly~~~~~~~ll~~~~~lL~~~~~~~~~~~~~ 179 (241)
+-.-. ...+....++|++ +|.+++++..
T Consensus 234 i~tv~-------~~~~~~~l~~l~~-~G~~v~vG~~ 261 (339)
T COG1064 234 IDTVG-------PATLEPSLKALRR-GGTLVLVGLP 261 (339)
T ss_pred EECCC-------hhhHHHHHHHHhc-CCEEEEECCC
Confidence 85322 4455555566663 4556666655
|
|
| >PF10237 N6-adenineMlase: Probable N6-adenine methyltransferase; InterPro: IPR019369 This family of proteins, which are of approximately 200 residues in length, contain a highly conserved Glu-Phe-Trp (QFW) motif close to the N terminus and an Asp/Asn-Pro-Pro-Tyr/Phe motif in the centre | Back alignment and domain information |
|---|
Probab=92.53 E-value=4.3 Score=32.43 Aligned_cols=129 Identities=15% Similarity=0.160 Sum_probs=77.8
Q ss_pred cHHHHHHHHHhccCCCCCCeEEEecCCCCHHHHHH-HHhCCEEEEEcCCCcHHHHHHHHHHHHHcCCceEEEEeecCCCC
Q 026274 54 CSVILAEYVWQQRYRFSGANVVELGAGTSLPGLVA-AKVGSNVTLTDDSNRIEVLKNMRRVCEMNKLNCRVMGLTWGFLD 132 (241)
Q Consensus 54 ~s~~L~~~l~~~~~~~~~~~VLElGcGtGl~sl~l-a~~g~~V~~tD~~~~~~~l~~~~~n~~~n~~~~~~~~l~w~~~~ 132 (241)
++..|++.+.+.. ..+.+|+=|||=+-...+.- ...+.++.+.|++.. ...-+.+ .+.-.|...+.
T Consensus 11 T~~~l~~~l~~~~--~~~~~iaclstPsl~~~l~~~~~~~~~~~Lle~D~R----------F~~~~~~-~F~fyD~~~p~ 77 (162)
T PF10237_consen 11 TAEFLARELLDGA--LDDTRIACLSTPSLYEALKKESKPRIQSFLLEYDRR----------FEQFGGD-EFVFYDYNEPE 77 (162)
T ss_pred HHHHHHHHHHHhc--CCCCEEEEEeCcHHHHHHHhhcCCCccEEEEeecch----------HHhcCCc-ceEECCCCChh
Confidence 4455666665532 24578999998776555554 122458999999962 2222333 45566665543
Q ss_pred c--CcCCCCCcEEEEcCCcCCCccHHHHHHHHHHHhhcCCCeEEEEEeeccCchhHHHHHHHHcCCEEEEE
Q 026274 133 A--SIFDLNPNIILGADVFYDASAFDDLFATITYLLQSSPGSVFITTYHNRSGHHLIEFLMVKWGLKCVKL 201 (241)
Q Consensus 133 ~--~~~~~~fDlIl~~dvly~~~~~~~ll~~~~~lL~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~i 201 (241)
. ....++||+|++-+++...+.......+++.+++ +++.++++... .....+.+.+|++....
T Consensus 78 ~~~~~l~~~~d~vv~DPPFl~~ec~~k~a~ti~~L~k--~~~kii~~Tg~----~~~~~~~~ll~~~~~~f 142 (162)
T PF10237_consen 78 ELPEELKGKFDVVVIDPPFLSEECLTKTAETIRLLLK--PGGKIILCTGE----EMEELIKKLLGLRMCDF 142 (162)
T ss_pred hhhhhcCCCceEEEECCCCCCHHHHHHHHHHHHHHhC--ccceEEEecHH----HHHHHHHHHhCeeEEeE
Confidence 2 1224689999988888777777888899999987 35555555322 22233334446665543
|
This latter motif is characteristic of N-6 adenine-specific DNA methylases and could be involved in substrate binding or in the catalytic activity (, ). |
| >PF02636 Methyltransf_28: Putative S-adenosyl-L-methionine-dependent methyltransferase; InterPro: IPR003788 This entry describes proteins of unknown function | Back alignment and domain information |
|---|
Probab=92.48 E-value=0.7 Score=39.39 Aligned_cols=33 Identities=18% Similarity=0.150 Sum_probs=23.2
Q ss_pred CCeEEEecCCCCHHHHHHHHh----------CCEEEEEcCCCc
Q 026274 71 GANVVELGAGTSLPGLVAAKV----------GSNVTLTDDSNR 103 (241)
Q Consensus 71 ~~~VLElGcGtGl~sl~la~~----------g~~V~~tD~~~~ 103 (241)
.-+|+|+|+|+|.++.-+.+. ..+++.++.|+.
T Consensus 19 ~~~ivE~GaG~G~La~diL~~l~~~~p~~~~~~~y~ivE~Sp~ 61 (252)
T PF02636_consen 19 PLRIVEIGAGRGTLARDILRYLRKFSPEVYKRLRYHIVEISPY 61 (252)
T ss_dssp -EEEEEES-TTSHHHHHHHHHHCCTTHHHHTTCEEEEE-TTCC
T ss_pred CcEEEEECCCchHHHHHHHHHHHHhChhhhhcceEEEEcCCHH
Confidence 468999999999776665553 127999999983
|
; PDB: 4F3N_A 1ZKD_B. |
| >PF01555 N6_N4_Mtase: DNA methylase; InterPro: IPR002941 This domain is found in DNA methylases | Back alignment and domain information |
|---|
Probab=92.46 E-value=0.5 Score=38.69 Aligned_cols=57 Identities=18% Similarity=0.115 Sum_probs=39.6
Q ss_pred eccHHHHHHHHHhccCCCCCCeEEEecCCCCHHHHHHHHhCCEEEEEcCCCcHHHHHHHH
Q 026274 52 WPCSVILAEYVWQQRYRFSGANVVELGAGTSLPGLVAAKVGSNVTLTDDSNRIEVLKNMR 111 (241)
Q Consensus 52 W~~s~~L~~~l~~~~~~~~~~~VLElGcGtGl~sl~la~~g~~V~~tD~~~~~~~l~~~~ 111 (241)
-+-...|.+.+..... .+|..|||-=||+|..++++.++|.+.+++|+++ +..+.++
T Consensus 174 ~~kP~~l~~~lI~~~t-~~gdiVlDpF~GSGTT~~aa~~l~R~~ig~E~~~--~y~~~a~ 230 (231)
T PF01555_consen 174 TQKPVELIERLIKAST-NPGDIVLDPFAGSGTTAVAAEELGRRYIGIEIDE--EYCEIAK 230 (231)
T ss_dssp T-S-HHHHHHHHHHHS--TT-EEEETT-TTTHHHHHHHHTT-EEEEEESSH--HHHHHHH
T ss_pred ecCCHHHHHHHHHhhh-ccceeeehhhhccChHHHHHHHcCCeEEEEeCCH--HHHHHhc
Confidence 3444555566554332 3578999999999999999999999999999995 5776654
|
In prokaryotes, the major role of DNA methylation is to protect host DNA against degradation by restriction enzymes. This family contains both N-4 cytosine-specific DNA methylases and N-6 Adenine-specific DNA methylases. N-4 cytosine-specific DNA methylases (2.1.1.113 from EC) [] are enzymes that specifically methylate the amino group at the C-4 position of cytosines in DNA. Such enzymes are found as components of type II restriction-modification systems in prokaryotes. Such enzymes recognise a specific sequence in DNA and methylate a cytosine in that sequence. By this action they protect DNA from cleavage by type II restriction enzymes that recognise the same sequence. N-6 adenine-specific DNA methylases (2.1.1.72 from EC) (A-Mtase) are enzymes that specifically methylate the amino group at the C-6 position of adenines in DNA. Such enzymes are found in the three existing types of bacterial restriction-modification systems (in type I system the A-Mtase is the product of the hsdM gene, and in type III it is the product of the mod gene). All of these enzymes recognise a specific sequence in DNA and methylate an adenine in that sequence.; GO: 0003677 DNA binding, 0008170 N-methyltransferase activity, 0006306 DNA methylation; PDB: 2ZIF_A 2ZIE_A 2ZIG_A 1NW6_A 1NW8_A 1NW7_A 1NW5_A 1EG2_A 1BOO_A 1G60_B .... |
| >KOG1227 consensus Putative methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=92.40 E-value=0.081 Score=46.21 Aligned_cols=71 Identities=18% Similarity=0.200 Sum_probs=55.7
Q ss_pred eEEeccHHHHHHHH--Hhcc----CCCCCCeEEEecCCCCHHHH-HHHHhCC-EEEEEcCCCcHHHHHHHHHHHHHcCCc
Q 026274 49 LFVWPCSVILAEYV--WQQR----YRFSGANVVELGAGTSLPGL-VAAKVGS-NVTLTDDSNRIEVLKNMRRVCEMNKLN 120 (241)
Q Consensus 49 ~~~W~~s~~L~~~l--~~~~----~~~~~~~VLElGcGtGl~sl-~la~~g~-~V~~tD~~~~~~~l~~~~~n~~~n~~~ 120 (241)
...|++.+.+-.+= .... -...+..|.||-+|.|...+ ++-++|| .|.+.|.+| ..++.+++|++.|+..
T Consensus 167 ~~~~d~t~~MFS~GN~~EK~Rv~~~sc~~eviVDLYAGIGYFTlpflV~agAk~V~A~EwNp--~svEaLrR~~~~N~V~ 244 (351)
T KOG1227|consen 167 TQIWDPTKTMFSRGNIKEKKRVLNTSCDGEVIVDLYAGIGYFTLPFLVTAGAKTVFACEWNP--WSVEALRRNAEANNVM 244 (351)
T ss_pred EEEechhhhhhhcCcHHHHHHhhhcccccchhhhhhcccceEEeehhhccCccEEEEEecCH--HHHHHHHHHHHhcchH
Confidence 36899988886661 1111 11245679999999999999 8889998 799999995 7999999999999875
Q ss_pred e
Q 026274 121 C 121 (241)
Q Consensus 121 ~ 121 (241)
.
T Consensus 245 ~ 245 (351)
T KOG1227|consen 245 D 245 (351)
T ss_pred H
Confidence 3
|
|
| >PF03686 UPF0146: Uncharacterised protein family (UPF0146); InterPro: IPR005353 The function of this family of proteins is unknown | Back alignment and domain information |
|---|
Probab=92.28 E-value=0.47 Score=36.25 Aligned_cols=43 Identities=26% Similarity=0.262 Sum_probs=30.3
Q ss_pred HHHHHHHhccCCCCCCeEEEecCCCC-HHHHHHHHhCCEEEEEcCCC
Q 026274 57 ILAEYVWQQRYRFSGANVVELGAGTS-LPGLVAAKVGSNVTLTDDSN 102 (241)
Q Consensus 57 ~L~~~l~~~~~~~~~~~VLElGcGtG-l~sl~la~~g~~V~~tD~~~ 102 (241)
.+++|+.... ...+|+|+|-|-= -.+..|+..|..|++||+++
T Consensus 3 ~~a~~ia~~~---~~~kiVEVGiG~~~~vA~~L~~~G~dV~~tDi~~ 46 (127)
T PF03686_consen 3 DFAEYIARLN---NYGKIVEVGIGFNPEVAKKLKERGFDVIATDINP 46 (127)
T ss_dssp HHHHHHHHHS----SSEEEEET-TT--HHHHHHHHHS-EEEEE-SS-
T ss_pred hHHHHHHHhC---CCCcEEEECcCCCHHHHHHHHHcCCcEEEEECcc
Confidence 4778887533 2349999999955 67888999999999999996
|
; PDB: 2K4M_A. |
| >TIGR00006 S-adenosyl-methyltransferase MraW | Back alignment and domain information |
|---|
Probab=92.27 E-value=0.86 Score=40.21 Aligned_cols=66 Identities=5% Similarity=-0.123 Sum_probs=45.7
Q ss_pred HHHHhccCCCCCCeEEEecCCCCHHHHHHHHh--CCEEEEEcCCCcHHHHHHHHHHHHHcCCceEEEEee
Q 026274 60 EYVWQQRYRFSGANVVELGAGTSLPGLVAAKV--GSNVTLTDDSNRIEVLKNMRRVCEMNKLNCRVMGLT 127 (241)
Q Consensus 60 ~~l~~~~~~~~~~~VLElGcGtGl~sl~la~~--g~~V~~tD~~~~~~~l~~~~~n~~~n~~~~~~~~l~ 127 (241)
+-+.......++..++|--+|.|-=+.++++. ..+|++.|.++ ++++.+++.....+.++.+...+
T Consensus 10 ~Evl~~L~~~~ggiyVD~TlG~GGHS~~iL~~l~~g~vigiD~D~--~Al~~ak~~L~~~~~R~~~i~~n 77 (305)
T TIGR00006 10 DEVVEGLNIKPDGIYIDCTLGFGGHSKAILEQLGTGRLIGIDRDP--QAIAFAKERLSDFEGRVVLIHDN 77 (305)
T ss_pred HHHHHhcCcCCCCEEEEeCCCChHHHHHHHHhCCCCEEEEEcCCH--HHHHHHHHHHhhcCCcEEEEeCC
Confidence 33333333346678999999999888888875 25899999995 79988888765443344444333
|
Genetics paper in 1972 links mra cluster to peptidoglycan biosynthesis in E. coli. Seems to be common in proteobacteria.wn. |
| >KOG1331 consensus Predicted methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=91.71 E-value=0.31 Score=42.26 Aligned_cols=113 Identities=12% Similarity=0.091 Sum_probs=68.6
Q ss_pred CcceEEeccHHHHHHHHHhccCCCCCCeEEEecCCCC-HHHHHHHHhCCEEEEEcCCCcHHHHHHHHHHHHHcCCceEEE
Q 026274 46 EYGLFVWPCSVILAEYVWQQRYRFSGANVVELGAGTS-LPGLVAAKVGSNVTLTDDSNRIEVLKNMRRVCEMNKLNCRVM 124 (241)
Q Consensus 46 ~~g~~~W~~s~~L~~~l~~~~~~~~~~~VLElGcGtG-l~sl~la~~g~~V~~tD~~~~~~~l~~~~~n~~~n~~~~~~~ 124 (241)
.+-...||....+.+.. ..+..++|.|||.| ..+.. -...+++.|++. .++.-+++ .+.. ...
T Consensus 27 ~tr~~~Wp~v~qfl~~~------~~gsv~~d~gCGngky~~~~---p~~~~ig~D~c~--~l~~~ak~----~~~~-~~~ 90 (293)
T KOG1331|consen 27 ATRAAPWPMVRQFLDSQ------PTGSVGLDVGCGNGKYLGVN---PLCLIIGCDLCT--GLLGGAKR----SGGD-NVC 90 (293)
T ss_pred ccccCccHHHHHHHhcc------CCcceeeecccCCcccCcCC---Ccceeeecchhh--hhcccccc----CCCc-eee
Confidence 45567898665554442 23678999999999 22221 123689999985 34433332 2221 111
Q ss_pred EeecCCCCcCcCCCCCcEEEEcCCcCCCc---cHHHHHHHHHHHhhcCCCeEEEE
Q 026274 125 GLTWGFLDASIFDLNPNIILGADVFYDAS---AFDDLFATITYLLQSSPGSVFIT 176 (241)
Q Consensus 125 ~l~w~~~~~~~~~~~fDlIl~~dvly~~~---~~~~ll~~~~~lL~~~~~~~~~~ 176 (241)
.-|.-+ .+..+.+||.+++.-+++|.. --..+++.+.+.+++++...+++
T Consensus 91 ~ad~l~--~p~~~~s~d~~lsiavihhlsT~~RR~~~l~e~~r~lrpgg~~lvyv 143 (293)
T KOG1331|consen 91 RADALK--LPFREESFDAALSIAVIHHLSTRERRERALEELLRVLRPGGNALVYV 143 (293)
T ss_pred hhhhhc--CCCCCCccccchhhhhhhhhhhHHHHHHHHHHHHHHhcCCCceEEEE
Confidence 112211 234456899999999999964 45667788888888665555553
|
|
| >PF04672 Methyltransf_19: S-adenosyl methyltransferase; InterPro: IPR006764 This is a family of uncharacterised proteins | Back alignment and domain information |
|---|
Probab=91.59 E-value=0.9 Score=39.26 Aligned_cols=107 Identities=21% Similarity=0.223 Sum_probs=60.4
Q ss_pred CeEEEecCC---CCHHHHHHHHh--CCEEEEEcCCCcHHHHHHHHHHHHHcCC-ceEEEEeecCCCCc--------CcCC
Q 026274 72 ANVVELGAG---TSLPGLVAAKV--GSNVTLTDDSNRIEVLKNMRRVCEMNKL-NCRVMGLTWGFLDA--------SIFD 137 (241)
Q Consensus 72 ~~VLElGcG---tGl~sl~la~~--g~~V~~tD~~~~~~~l~~~~~n~~~n~~-~~~~~~l~w~~~~~--------~~~~ 137 (241)
...|||||| .|-+-..+.+. .++|+-+|.++ -++...+.-...+.. ...+...|..+... ...+
T Consensus 70 rQFLDlGsGlPT~~nvHevAq~~~P~aRVVYVD~DP--vv~ah~ralL~~~~~g~t~~v~aD~r~p~~iL~~p~~~~~lD 147 (267)
T PF04672_consen 70 RQFLDLGSGLPTAGNVHEVAQRVAPDARVVYVDNDP--VVLAHARALLADNPRGRTAYVQADLRDPEAILAHPEVRGLLD 147 (267)
T ss_dssp -EEEEET--S--SS-HHHHHHHH-TT-EEEEEESSH--HHHHCCHHHHTT-TTSEEEEEE--TT-HHHHHCSHHHHCC--
T ss_pred ceEEEcccCCCCCCCHhHHHHhhCCCceEEEECCCc--hHHHHHHhhhcCCCCccEEEEeCCCCCHHHHhcCHHHHhcCC
Confidence 469999999 34443333332 56999999995 578777776655432 35666777665431 1111
Q ss_pred -CCCcEEEEcCCcCCC---ccHHHHHHHHHHHhhcCCCeEEEEEeeccC
Q 026274 138 -LNPNIILGADVFYDA---SAFDDLFATITYLLQSSPGSVFITTYHNRS 182 (241)
Q Consensus 138 -~~fDlIl~~dvly~~---~~~~~ll~~~~~lL~~~~~~~~~~~~~~r~ 182 (241)
..+=-++...++++. ++...++.++...|. +|..+.+++....
T Consensus 148 ~~rPVavll~~vLh~v~D~~dp~~iv~~l~d~la--pGS~L~ish~t~d 194 (267)
T PF04672_consen 148 FDRPVAVLLVAVLHFVPDDDDPAGIVARLRDALA--PGSYLAISHATDD 194 (267)
T ss_dssp TTS--EEEECT-GGGS-CGCTHHHHHHHHHCCS---TT-EEEEEEEB-T
T ss_pred CCCCeeeeeeeeeccCCCccCHHHHHHHHHHhCC--CCceEEEEecCCC
Confidence 123357778888774 468888888888886 7788888876544
|
; PDB: 3GIW_A 3GO4_A 2QE6_A. |
| >COG1889 NOP1 Fibrillarin-like rRNA methylase [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=91.47 E-value=7.4 Score=32.44 Aligned_cols=155 Identities=16% Similarity=0.153 Sum_probs=81.6
Q ss_pred eEEecc--HHHHHHHHHhc--cCCCCCCeEEEecCCCCHHHHHHHH-hCC-EEEEEcCCCcHHHHHHHHHHHHH-cCCce
Q 026274 49 LFVWPC--SVILAEYVWQQ--RYRFSGANVVELGAGTSLPGLVAAK-VGS-NVTLTDDSNRIEVLKNMRRVCEM-NKLNC 121 (241)
Q Consensus 49 ~~~W~~--s~~L~~~l~~~--~~~~~~~~VLElGcGtGl~sl~la~-~g~-~V~~tD~~~~~~~l~~~~~n~~~-n~~~~ 121 (241)
.+.|+. |.+.|..+... ....+|.+||=||+-+|..--..+. .|. .+.+++.++. +...+-.-++. +++
T Consensus 51 YR~Wnp~RSKLaAaIl~Gl~~~pi~~g~~VLYLGAasGTTvSHVSDIv~~G~iYaVEfs~R--~~reLl~~a~~R~Ni-- 126 (231)
T COG1889 51 YREWNPRRSKLAAAILKGLKNFPIKEGSKVLYLGAASGTTVSHVSDIVGEGRIYAVEFSPR--PMRELLDVAEKRPNI-- 126 (231)
T ss_pred eeeeCcchhHHHHHHHcCcccCCcCCCCEEEEeeccCCCcHhHHHhccCCCcEEEEEecch--hHHHHHHHHHhCCCc--
Confidence 578876 34444444432 2445789999999999976656665 353 7999999973 44433333322 222
Q ss_pred EEEEeecCCCCc-CcCCCCCcEEEEcCCcCCCccHHHHHHHHHHHhhcCCCeEEEEEeeccC------chhHHHH---HH
Q 026274 122 RVMGLTWGFLDA-SIFDLNPNIILGADVFYDASAFDDLFATITYLLQSSPGSVFITTYHNRS------GHHLIEF---LM 191 (241)
Q Consensus 122 ~~~~l~w~~~~~-~~~~~~fDlIl~~dvly~~~~~~~ll~~~~~lL~~~~~~~~~~~~~~r~------~~~~~~~---~~ 191 (241)
-..-.|...+.. ...-+..|+|.. |+ -.+...+-+.......|+++ |..+++...|. +...+.. .+
T Consensus 127 ~PIL~DA~~P~~Y~~~Ve~VDviy~-DV-AQp~Qa~I~~~Na~~FLk~~--G~~~i~iKArSIdvT~dp~~vf~~ev~kL 202 (231)
T COG1889 127 IPILEDARKPEKYRHLVEKVDVIYQ-DV-AQPNQAEILADNAEFFLKKG--GYVVIAIKARSIDVTADPEEVFKDEVEKL 202 (231)
T ss_pred eeeecccCCcHHhhhhcccccEEEE-ec-CCchHHHHHHHHHHHhcccC--CeEEEEEEeecccccCCHHHHHHHHHHHH
Confidence 111112221100 001124555542 22 12456667778889999844 33333333332 2223332 24
Q ss_pred HHcCCEEEEEecCCCCCCccccc
Q 026274 192 VKWGLKCVKLVDGFSFLPHYKAR 214 (241)
Q Consensus 192 ~~~g~~~~~i~~~~~~~p~~~~~ 214 (241)
.+.+|+..... ...|+.+.+
T Consensus 203 ~~~~f~i~e~~---~LePye~DH 222 (231)
T COG1889 203 EEGGFEILEVV---DLEPYEKDH 222 (231)
T ss_pred HhcCceeeEEe---ccCCcccce
Confidence 67788887763 334555443
|
|
| >PRK11524 putative methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=91.42 E-value=0.92 Score=39.45 Aligned_cols=45 Identities=24% Similarity=0.180 Sum_probs=39.9
Q ss_pred CCCCeEEEecCCCCHHHHHHHHhCCEEEEEcCCCcHHHHHHHHHHHH
Q 026274 69 FSGANVVELGAGTSLPGLVAAKVGSNVTLTDDSNRIEVLKNMRRVCE 115 (241)
Q Consensus 69 ~~~~~VLElGcGtGl~sl~la~~g~~V~~tD~~~~~~~l~~~~~n~~ 115 (241)
.+|..|||-=||+|..++++.++|-+.+|+|+++ +..+.+++.+.
T Consensus 207 ~~GD~VLDPF~GSGTT~~AA~~lgR~~IG~Ei~~--~Y~~~a~~Rl~ 251 (284)
T PRK11524 207 NPGDIVLDPFAGSFTTGAVAKASGRKFIGIEINS--EYIKMGLRRLD 251 (284)
T ss_pred CCCCEEEECCCCCcHHHHHHHHcCCCEEEEeCCH--HHHHHHHHHHH
Confidence 4678999999999999999999999999999995 68888877664
|
|
| >COG1565 Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=91.36 E-value=0.74 Score=41.39 Aligned_cols=47 Identities=23% Similarity=0.198 Sum_probs=30.3
Q ss_pred HHHHHHHHhcc---CCCCCCeEEEecCCCCHHHHHHHH-h---------CCEEEEEcCCC
Q 026274 56 VILAEYVWQQR---YRFSGANVVELGAGTSLPGLVAAK-V---------GSNVTLTDDSN 102 (241)
Q Consensus 56 ~~L~~~l~~~~---~~~~~~~VLElGcGtGl~sl~la~-~---------g~~V~~tD~~~ 102 (241)
..++.|+.+.- .......++|||+|+|.+.--+.+ . ..++..++.|+
T Consensus 60 ella~~~~~~wq~~g~p~~~~lvEiGaG~G~l~~DiL~~l~~L~P~~~~~~~~~iiE~s~ 119 (370)
T COG1565 60 ELLAEQFLQLWQELGRPAPLKLVEIGAGRGTLASDILRTLRRLYPELYEALSYYIIEPSP 119 (370)
T ss_pred HHHHHHHHHHHHHhcCCCCceEEEeCCCcChHHHHHHHHHHHhCHHHHhcceEEEEecCH
Confidence 34555554422 222345799999999966554443 3 34899999996
|
|
| >PRK13699 putative methylase; Provisional | Back alignment and domain information |
|---|
Probab=91.29 E-value=1.1 Score=37.68 Aligned_cols=45 Identities=13% Similarity=0.041 Sum_probs=38.5
Q ss_pred CCCeEEEecCCCCHHHHHHHHhCCEEEEEcCCCcHHHHHHHHHHHHH
Q 026274 70 SGANVVELGAGTSLPGLVAAKVGSNVTLTDDSNRIEVLKNMRRVCEM 116 (241)
Q Consensus 70 ~~~~VLElGcGtGl~sl~la~~g~~V~~tD~~~~~~~l~~~~~n~~~ 116 (241)
+|..|||-=||+|..++++.++|.+.+++|+++ +..+.+.+.++.
T Consensus 163 ~g~~vlDpf~Gsgtt~~aa~~~~r~~~g~e~~~--~y~~~~~~r~~~ 207 (227)
T PRK13699 163 PNAIVLDPFAGSGSTCVAALQSGRRYIGIELLE--QYHRAGQQRLAA 207 (227)
T ss_pred CCCEEEeCCCCCCHHHHHHHHcCCCEEEEecCH--HHHHHHHHHHHH
Confidence 677899999999999999999999999999995 577766665543
|
|
| >KOG2671 consensus Putative RNA methylase [Replication, recombination and repair] | Back alignment and domain information |
|---|
Probab=91.22 E-value=0.3 Score=43.59 Aligned_cols=80 Identities=20% Similarity=0.130 Sum_probs=54.4
Q ss_pred CCCCCeEEEecCCCCHHHHHHHHhCCEEEEEcCCCcHHHHH-------HHHHHHHHcCCc---eEEEEeecCCCCcCcCC
Q 026274 68 RFSGANVVELGAGTSLPGLVAAKVGSNVTLTDDSNRIEVLK-------NMRRVCEMNKLN---CRVMGLTWGFLDASIFD 137 (241)
Q Consensus 68 ~~~~~~VLElGcGtGl~sl~la~~g~~V~~tD~~~~~~~l~-------~~~~n~~~n~~~---~~~~~l~w~~~~~~~~~ 137 (241)
...|+-|.|==.|||-+-+.+|..|+.|+|+||+-. ++. +++.|.+.-+.. +.+...|..+..... .
T Consensus 206 v~pGdivyDPFVGTGslLvsaa~FGa~viGtDIDyr--~vragrg~~~si~aNFkQYg~~~~fldvl~~D~sn~~~rs-n 282 (421)
T KOG2671|consen 206 VKPGDIVYDPFVGTGSLLVSAAHFGAYVIGTDIDYR--TVRAGRGEDESIKANFKQYGSSSQFLDVLTADFSNPPLRS-N 282 (421)
T ss_pred cCCCCEEecCccccCceeeehhhhcceeeccccchh--eeecccCCCcchhHhHHHhCCcchhhheeeecccCcchhh-c
Confidence 446888999999999999999999999999999963 553 455566655542 233444444332211 3
Q ss_pred CCCcEEEEcCCcCC
Q 026274 138 LNPNIILGADVFYD 151 (241)
Q Consensus 138 ~~fDlIl~~dvly~ 151 (241)
..||.|+| |+-|-
T Consensus 283 ~~fDaIvc-DPPYG 295 (421)
T KOG2671|consen 283 LKFDAIVC-DPPYG 295 (421)
T ss_pred ceeeEEEe-CCCcc
Confidence 47999995 44444
|
|
| >COG1255 Uncharacterized protein conserved in archaea [Function unknown] | Back alignment and domain information |
|---|
Probab=90.96 E-value=1.9 Score=32.46 Aligned_cols=98 Identities=23% Similarity=0.245 Sum_probs=59.6
Q ss_pred HHHHHHhccCCCCCCeEEEecCCCC-HHHHHHHHhCCEEEEEcCCCcHHHHHHHHHHHHHcCCceEEEEeecCCCCcCcC
Q 026274 58 LAEYVWQQRYRFSGANVVELGAGTS-LPGLVAAKVGSNVTLTDDSNRIEVLKNMRRVCEMNKLNCRVMGLTWGFLDASIF 136 (241)
Q Consensus 58 L~~~l~~~~~~~~~~~VLElGcGtG-l~sl~la~~g~~V~~tD~~~~~~~l~~~~~n~~~n~~~~~~~~l~w~~~~~~~~ 136 (241)
+++|+... ....+|.|+|.|-= -++-.+++.|..|++||+++. ++. .+ +++..-|..++
T Consensus 4 ~a~~iAre---~~~gkVvEVGiG~~~~VA~~L~e~g~dv~atDI~~~---------~a~-~g--~~~v~DDitnP----- 63 (129)
T COG1255 4 VAEYIARE---NARGKVVEVGIGFFLDVAKRLAERGFDVLATDINEK---------TAP-EG--LRFVVDDITNP----- 63 (129)
T ss_pred HHHHHHHH---hcCCcEEEEccchHHHHHHHHHHcCCcEEEEecccc---------cCc-cc--ceEEEccCCCc-----
Confidence 44555432 22348999999965 568888999999999999961 122 23 33444333322
Q ss_pred CCCCcEEEEcCCcCCCccHHHHHHHHHHHhhcCCCeEEEEE
Q 026274 137 DLNPNIILGADVFYDASAFDDLFATITYLLQSSPGSVFITT 177 (241)
Q Consensus 137 ~~~fDlIl~~dvly~~~~~~~ll~~~~~lL~~~~~~~~~~~ 177 (241)
..-+=-++|.+|.....+.+.+.+.++-+.=+-.+++.+
T Consensus 64 --~~~iY~~A~lIYSiRpppEl~~~ildva~aVga~l~I~p 102 (129)
T COG1255 64 --NISIYEGADLIYSIRPPPELQSAILDVAKAVGAPLYIKP 102 (129)
T ss_pred --cHHHhhCccceeecCCCHHHHHHHHHHHHhhCCCEEEEe
Confidence 233344667777777777777777777654333345544
|
|
| >COG0270 Dcm Site-specific DNA methylase [DNA replication, recombination, and repair] | Back alignment and domain information |
|---|
Probab=90.85 E-value=0.91 Score=40.36 Aligned_cols=74 Identities=15% Similarity=0.122 Sum_probs=49.5
Q ss_pred CeEEEecCCCCHHHHHHHHhCCE-EEEEcCCCcHHHHHHHHHHHHHcCCceEEEEeecCCCCcCcCCC-CCcEEEEcCCc
Q 026274 72 ANVVELGAGTSLPGLVAAKVGSN-VTLTDDSNRIEVLKNMRRVCEMNKLNCRVMGLTWGFLDASIFDL-NPNIILGADVF 149 (241)
Q Consensus 72 ~~VLElGcGtGl~sl~la~~g~~-V~~tD~~~~~~~l~~~~~n~~~n~~~~~~~~l~w~~~~~~~~~~-~fDlIl~~dvl 149 (241)
.+++||-||.|-+++.+...|.+ +.+.|+++ .+++..+.|... ..+...|........... .+|+|++..+.
T Consensus 4 ~~~idLFsG~GG~~lGf~~agf~~~~a~Eid~--~a~~ty~~n~~~----~~~~~~di~~~~~~~~~~~~~DvligGpPC 77 (328)
T COG0270 4 MKVIDLFAGIGGLSLGFEEAGFEIVFANEIDP--PAVATYKANFPH----GDIILGDIKELDGEALRKSDVDVLIGGPPC 77 (328)
T ss_pred ceEEeeccCCchHHHHHHhcCCeEEEEEecCH--HHHHHHHHhCCC----CceeechHhhcChhhccccCCCEEEeCCCC
Confidence 57999999999999999999985 88999995 577666666543 122222222221111122 78999988776
Q ss_pred CC
Q 026274 150 YD 151 (241)
Q Consensus 150 y~ 151 (241)
-.
T Consensus 78 Q~ 79 (328)
T COG0270 78 QD 79 (328)
T ss_pred cc
Confidence 44
|
|
| >KOG4058 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=90.64 E-value=2.3 Score=33.62 Aligned_cols=94 Identities=20% Similarity=0.239 Sum_probs=55.6
Q ss_pred CeEEEecCCCCHHHHHHHHhCC-EEEEEcCCCcHHHHHHHHHHHHHcCC--ceEEEEee-cCCCCcCcCCCCCcEEEEcC
Q 026274 72 ANVVELGAGTSLPGLVAAKVGS-NVTLTDDSNRIEVLKNMRRVCEMNKL--NCRVMGLT-WGFLDASIFDLNPNIILGAD 147 (241)
Q Consensus 72 ~~VLElGcGtGl~sl~la~~g~-~V~~tD~~~~~~~l~~~~~n~~~n~~--~~~~~~l~-w~~~~~~~~~~~fDlIl~~d 147 (241)
.+.+|||+|-|.+-+.++++|. .-+++++++ =++...+-.+-..+. ..++..-| |.- .+.+-.+-+|++++
T Consensus 74 GklvDlGSGDGRiVlaaar~g~~~a~GvELNp--wLVaysrl~a~R~g~~k~trf~RkdlwK~---dl~dy~~vviFgae 148 (199)
T KOG4058|consen 74 GKLVDLGSGDGRIVLAAARCGLRPAVGVELNP--WLVAYSRLHAWRAGCAKSTRFRRKDLWKV---DLRDYRNVVIFGAE 148 (199)
T ss_pred CcEEeccCCCceeehhhhhhCCCcCCceeccH--HHHHHHHHHHHHHhcccchhhhhhhhhhc---cccccceEEEeehH
Confidence 3699999999999999999996 899999996 355555554443333 33333222 332 12222455566543
Q ss_pred CcCCCccHHHHHHHHHHHhhcCCCeEEEEE
Q 026274 148 VFYDASAFDDLFATITYLLQSSPGSVFITT 177 (241)
Q Consensus 148 vly~~~~~~~ll~~~~~lL~~~~~~~~~~~ 177 (241)
.....|-..+..-+. .++.++.+
T Consensus 149 -----s~m~dLe~KL~~E~p--~nt~vvac 171 (199)
T KOG4058|consen 149 -----SVMPDLEDKLRTELP--ANTRVVAC 171 (199)
T ss_pred -----HHHhhhHHHHHhhCc--CCCeEEEE
Confidence 333445555554442 34555554
|
|
| >PRK12548 shikimate 5-dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=89.76 E-value=6.3 Score=34.34 Aligned_cols=140 Identities=14% Similarity=0.091 Sum_probs=69.7
Q ss_pred HHHHHHHHHhccCCCCCCeEEEecCCCCHH---HHHHHHhCC-EEEEEcCCCc-HHHHHHHHHHHHHcCCceEEEEeecC
Q 026274 55 SVILAEYVWQQRYRFSGANVVELGAGTSLP---GLVAAKVGS-NVTLTDDSNR-IEVLKNMRRVCEMNKLNCRVMGLTWG 129 (241)
Q Consensus 55 s~~L~~~l~~~~~~~~~~~VLElGcGtGl~---sl~la~~g~-~V~~tD~~~~-~~~l~~~~~n~~~n~~~~~~~~l~w~ 129 (241)
..-+...|.......+++++|=+|+| |.. ...+++.|+ +|++++.++. .+-.+.+.+.+...+..+.+...+|.
T Consensus 110 ~~G~~~~l~~~~~~~~~k~vlI~GAG-GagrAia~~La~~G~~~V~I~~R~~~~~~~a~~l~~~l~~~~~~~~~~~~d~~ 188 (289)
T PRK12548 110 GLGFVRNLREHGVDVKGKKLTVIGAG-GAATAIQVQCALDGAKEITIFNIKDDFYERAEQTAEKIKQEVPECIVNVYDLN 188 (289)
T ss_pred HHHHHHHHHhcCCCcCCCEEEEECCc-HHHHHHHHHHHHCCCCEEEEEeCCchHHHHHHHHHHHHhhcCCCceeEEechh
Confidence 34444555444334578899999998 633 223456687 5999998841 01233333333333333334445665
Q ss_pred CCCc-CcCCCCCcEEEEcCCcCCCc--cHHHHHHHHHHHhhcCCCeEEEEEeeccCchhHHHHHHHHcCCEEEE
Q 026274 130 FLDA-SIFDLNPNIILGADVFYDAS--AFDDLFATITYLLQSSPGSVFITTYHNRSGHHLIEFLMVKWGLKCVK 200 (241)
Q Consensus 130 ~~~~-~~~~~~fDlIl~~dvly~~~--~~~~ll~~~~~lL~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~ 200 (241)
+... ...-..+|+|+.+-++-..+ +..++.. ...|. +...++=+.|.++.+ .+...+++.|..+..
T Consensus 189 ~~~~~~~~~~~~DilINaTp~Gm~~~~~~~~~~~--~~~l~-~~~~v~D~vY~P~~T--~ll~~A~~~G~~~~~ 257 (289)
T PRK12548 189 DTEKLKAEIASSDILVNATLVGMKPNDGETNIKD--TSVFR-KDLVVADTVYNPKKT--KLLEDAEAAGCKTVG 257 (289)
T ss_pred hhhHHHhhhccCCEEEEeCCCCCCCCCCCCCCCc--HHhcC-CCCEEEEecCCCCCC--HHHHHHHHCCCeeeC
Confidence 3211 00112579999877664322 1111101 13343 122333355655543 344556778876654
|
|
| >KOG1201 consensus Hydroxysteroid 17-beta dehydrogenase 11 [Secondary metabolites biosynthesis, transport and catabolism] | Back alignment and domain information |
|---|
Probab=89.63 E-value=1.9 Score=37.82 Aligned_cols=78 Identities=17% Similarity=0.113 Sum_probs=52.3
Q ss_pred CCCCCCeEEEecCCCC---HHHHHHHHhCCEEEEEcCCCcHHHHHHHHHHHHHcCCceEEEEeecCCCCcC------c--
Q 026274 67 YRFSGANVVELGAGTS---LPGLVAAKVGSNVTLTDDSNRIEVLKNMRRVCEMNKLNCRVMGLTWGFLDAS------I-- 135 (241)
Q Consensus 67 ~~~~~~~VLElGcGtG---l~sl~la~~g~~V~~tD~~~~~~~l~~~~~n~~~n~~~~~~~~l~w~~~~~~------~-- 135 (241)
...+|..||==|.|.| .+++.+|++|+++++.|++.. -.+...+.++.+| .+.....|..+..+- .
T Consensus 34 k~v~g~~vLITGgg~GlGr~ialefa~rg~~~vl~Din~~--~~~etv~~~~~~g-~~~~y~cdis~~eei~~~a~~Vk~ 110 (300)
T KOG1201|consen 34 KSVSGEIVLITGGGSGLGRLIALEFAKRGAKLVLWDINKQ--GNEETVKEIRKIG-EAKAYTCDISDREEIYRLAKKVKK 110 (300)
T ss_pred hhccCCEEEEeCCCchHHHHHHHHHHHhCCeEEEEecccc--chHHHHHHHHhcC-ceeEEEecCCCHHHHHHHHHHHHH
Confidence 3457889999999988 578889999999999999973 4444444444445 566666666554320 0
Q ss_pred CCCCCcEEEEcC
Q 026274 136 FDLNPNIILGAD 147 (241)
Q Consensus 136 ~~~~fDlIl~~d 147 (241)
.-+..|+++.+-
T Consensus 111 e~G~V~ILVNNA 122 (300)
T KOG1201|consen 111 EVGDVDILVNNA 122 (300)
T ss_pred hcCCceEEEecc
Confidence 113678887654
|
|
| >PRK15001 SAM-dependent 23S ribosomal RNA mG1835 methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=89.61 E-value=16 Score=33.29 Aligned_cols=120 Identities=14% Similarity=0.137 Sum_probs=73.5
Q ss_pred cceEEeccHH-HHHHHHHhccCCCCCCeEEEecCCCCHHHHHHHHhCCEEEEEcCCCcHHHHHHHHHHHHHcCCceE-EE
Q 026274 47 YGLFVWPCSV-ILAEYVWQQRYRFSGANVVELGAGTSLPGLVAAKVGSNVTLTDDSNRIEVLKNMRRVCEMNKLNCR-VM 124 (241)
Q Consensus 47 ~g~~~W~~s~-~L~~~l~~~~~~~~~~~VLElGcGtGl~sl~la~~g~~V~~tD~~~~~~~l~~~~~n~~~n~~~~~-~~ 124 (241)
.-++.|+++- .|.+++.... ..+ +||=++=.-|.++..++..+.. ..+|-- -.-..++.|++.|++... +.
T Consensus 23 ~~l~awdaade~ll~~~~~~~--~~~-~~~i~nd~fGal~~~l~~~~~~-~~~ds~---~~~~~~~~n~~~n~~~~~~~~ 95 (378)
T PRK15001 23 NPLQAWEAADEYLLQQLDDTE--IRG-PVLILNDAFGALSCALAEHKPY-SIGDSY---ISELATRENLRLNGIDESSVK 95 (378)
T ss_pred CcccccccHHHHHHHHHhhcc--cCC-CEEEEcCchhHHHHHHHhCCCC-eeehHH---HHHHHHHHHHHHcCCCcccce
Confidence 4589999885 3333433321 122 7999999999999999965543 234443 244577889999988644 33
Q ss_pred EeecCCCCcCcCCCCCcEEEEcCCcCCCcc---HHHHHHHHHHHhhcCCCeEEEEEeeccCc
Q 026274 125 GLTWGFLDASIFDLNPNIILGADVFYDASA---FDDLFATITYLLQSSPGSVFITTYHNRSG 183 (241)
Q Consensus 125 ~l~w~~~~~~~~~~~fDlIl~~dvly~~~~---~~~ll~~~~~lL~~~~~~~~~~~~~~r~~ 183 (241)
.++-. ++ ....+|+|+. |.+.. ++..+..+...+. +++.++++...+..
T Consensus 96 ~~~~~---~~-~~~~~d~vl~----~~PK~~~~l~~~l~~l~~~l~--~~~~ii~g~~~k~i 147 (378)
T PRK15001 96 FLDST---AD-YPQQPGVVLI----KVPKTLALLEQQLRALRKVVT--SDTRIIAGAKARDI 147 (378)
T ss_pred eeccc---cc-ccCCCCEEEE----EeCCCHHHHHHHHHHHHhhCC--CCCEEEEEEecCCC
Confidence 33222 22 3346999884 55554 4444555556665 67777776655544
|
|
| >PF03141 Methyltransf_29: Putative S-adenosyl-L-methionine-dependent methyltransferase; InterPro: IPR004159 Members of this family of hypothetical plant proteins are putative methyltransferases | Back alignment and domain information |
|---|
Probab=89.53 E-value=1.2 Score=41.63 Aligned_cols=117 Identities=15% Similarity=0.115 Sum_probs=73.6
Q ss_pred CeEEEecCCCCHHHHHHHHhCC---EEEEEcCCCcHHHHHHHHHHHHHcCCceEEEEeecCCCCcCcCCCCCcEEEEcCC
Q 026274 72 ANVVELGAGTSLPGLVAAKVGS---NVTLTDDSNRIEVLKNMRRVCEMNKLNCRVMGLTWGFLDASIFDLNPNIILGADV 148 (241)
Q Consensus 72 ~~VLElGcGtGl~sl~la~~g~---~V~~tD~~~~~~~l~~~~~n~~~n~~~~~~~~l~w~~~~~~~~~~~fDlIl~~dv 148 (241)
.+|+|..+|.|-++.+|..... +|+-++... .|. .+-..|+-- .-.||.+... ..+..||+|-++.+
T Consensus 367 RNVMDMnAg~GGFAAAL~~~~VWVMNVVP~~~~n---tL~----vIydRGLIG--~yhDWCE~fs-TYPRTYDLlHA~~l 436 (506)
T PF03141_consen 367 RNVMDMNAGYGGFAAALIDDPVWVMNVVPVSGPN---TLP----VIYDRGLIG--VYHDWCEAFS-TYPRTYDLLHADGL 436 (506)
T ss_pred eeeeeecccccHHHHHhccCCceEEEecccCCCC---cch----hhhhcccch--hccchhhccC-CCCcchhheehhhh
Confidence 4799999999977766665543 444443322 222 222234321 2357887643 35679999998877
Q ss_pred cCC---CccHHHHHHHHHHHhhcCCCeEEEEEeeccCchhHHHHHHHHcCCEEEEE
Q 026274 149 FYD---ASAFDDLFATITYLLQSSPGSVFITTYHNRSGHHLIEFLMVKWGLKCVKL 201 (241)
Q Consensus 149 ly~---~~~~~~ll~~~~~lL~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~i 201 (241)
+-. .-.++.++-.+.++|+ |+|.+++-...- .-..++.+++...+++...
T Consensus 437 fs~~~~rC~~~~illEmDRILR--P~G~~iiRD~~~-vl~~v~~i~~~lrW~~~~~ 489 (506)
T PF03141_consen 437 FSLYKDRCEMEDILLEMDRILR--PGGWVIIRDTVD-VLEKVKKIAKSLRWEVRIH 489 (506)
T ss_pred hhhhcccccHHHHHHHhHhhcC--CCceEEEeccHH-HHHHHHHHHHhCcceEEEE
Confidence 633 3468899999999998 677777642221 1123445677788887766
|
; GO: 0008168 methyltransferase activity |
| >COG1063 Tdh Threonine dehydrogenase and related Zn-dependent dehydrogenases [Amino acid transport and metabolism / General function prediction only] | Back alignment and domain information |
|---|
Probab=89.50 E-value=1.8 Score=38.73 Aligned_cols=101 Identities=21% Similarity=0.213 Sum_probs=57.4
Q ss_pred CCCeEEEecCC-CCHHHHHHHHh-CC-EEEEEcCCCcHHHHHHHHHHHHHcCCceEEEEee--cCCCCcCcC-CCCCcEE
Q 026274 70 SGANVVELGAG-TSLPGLVAAKV-GS-NVTLTDDSNRIEVLKNMRRVCEMNKLNCRVMGLT--WGFLDASIF-DLNPNII 143 (241)
Q Consensus 70 ~~~~VLElGcG-tGl~sl~la~~-g~-~V~~tD~~~~~~~l~~~~~n~~~n~~~~~~~~l~--w~~~~~~~~-~~~fDlI 143 (241)
.+.+|+=+||| .|++++.+++. |+ +|+++|.++ +=++.+++-. +....+.... ......... ...+|++
T Consensus 168 ~~~~V~V~GaGpIGLla~~~a~~~Ga~~Viv~d~~~--~Rl~~A~~~~---g~~~~~~~~~~~~~~~~~~~t~g~g~D~v 242 (350)
T COG1063 168 PGGTVVVVGAGPIGLLAIALAKLLGASVVIVVDRSP--ERLELAKEAG---GADVVVNPSEDDAGAEILELTGGRGADVV 242 (350)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHcCCceEEEeCCCH--HHHHHHHHhC---CCeEeecCccccHHHHHHHHhCCCCCCEE
Confidence 44489999999 89998888875 66 899999996 4566555411 1111110000 000000111 1258887
Q ss_pred EEcCCcCCCccHHHHHHHHHHHhhcCCCeEEEEEeeccC
Q 026274 144 LGADVFYDASAFDDLFATITYLLQSSPGSVFITTYHNRS 182 (241)
Q Consensus 144 l~~dvly~~~~~~~ll~~~~~lL~~~~~~~~~~~~~~r~ 182 (241)
+=+- -....+....+++++ +|.+.+++.....
T Consensus 243 ie~~------G~~~~~~~ai~~~r~-gG~v~~vGv~~~~ 274 (350)
T COG1063 243 IEAV------GSPPALDQALEALRP-GGTVVVVGVYGGE 274 (350)
T ss_pred EECC------CCHHHHHHHHHHhcC-CCEEEEEeccCCc
Confidence 7322 244566677777763 4567777765544
|
|
| >COG2961 ComJ Protein involved in catabolism of external DNA [General function prediction only] | Back alignment and domain information |
|---|
Probab=89.28 E-value=11 Score=32.31 Aligned_cols=143 Identities=14% Similarity=0.168 Sum_probs=90.5
Q ss_pred EEeccH---HHHHHHHHhccCCCCCCeEEEecCCCCHHHHHHHHhCCEEEEEcCCCcHHHHHHHHHHHHHcCCceEEEEe
Q 026274 50 FVWPCS---VILAEYVWQQRYRFSGANVVELGAGTSLPGLVAAKVGSNVTLTDDSNRIEVLKNMRRVCEMNKLNCRVMGL 126 (241)
Q Consensus 50 ~~W~~s---~~L~~~l~~~~~~~~~~~VLElGcGtGl~sl~la~~g~~V~~tD~~~~~~~l~~~~~n~~~n~~~~~~~~l 126 (241)
++|.+. -.|..|+..-.....+.+ |..-||+-+++-.+.+..-++.++++.+. =...++.|.. .+-++++...
T Consensus 66 RL~~a~~lpa~l~~yl~~i~~lN~~~~-l~~YpGSP~lA~~llR~qDRl~l~ELHp~--D~~~L~~~f~-~d~~vrv~~~ 141 (279)
T COG2961 66 RLWQAADLPAELEPYLDAVRQLNPGGG-LRYYPGSPLLARQLLREQDRLVLTELHPS--DAPLLRNNFA-GDRRVRVLRG 141 (279)
T ss_pred HHHhcCCchHHHHHHHHHHHHhCCCCC-cccCCCCHHHHHHHcchhceeeeeecCcc--HHHHHHHHhC-CCcceEEEec
Confidence 556543 345666655444334433 89999999988888887779999999974 4456666665 4456666666
Q ss_pred e-cCCCCcCcCC-CCCcEEEEcCCcCCCccHHHHHHHHHHHhhcCCCeEEEEEeeccCchhHHHHH--HHHcCC
Q 026274 127 T-WGFLDASIFD-LNPNIILGADVFYDASAFDDLFATITYLLQSSPGSVFITTYHNRSGHHLIEFL--MVKWGL 196 (241)
Q Consensus 127 ~-w~~~~~~~~~-~~fDlIl~~dvly~~~~~~~ll~~~~~lL~~~~~~~~~~~~~~r~~~~~~~~~--~~~~g~ 196 (241)
| |......+.+ ++--+|+.-.++....+.+.+++++.+.++.=++|++.+=|+.........++ +++.|.
T Consensus 142 DG~~~l~a~LPP~erRglVLIDPPfE~~~eY~rvv~~l~~~~kRf~~g~yaiWYPik~r~~~~~f~~~L~~~~i 215 (279)
T COG2961 142 DGFLALKAHLPPKERRGLVLIDPPFELKDEYQRVVEALAEAYKRFATGTYAIWYPIKDRRQIRRFLRALEALGI 215 (279)
T ss_pred CcHHHHhhhCCCCCcceEEEeCCCcccccHHHHHHHHHHHHHHhhcCceEEEEEeecchHHHHHHHHHHhhcCc
Confidence 5 3322222222 24557777667667789999999999999876666555444444333333333 455554
|
|
| >PRK07523 gluconate 5-dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=88.98 E-value=9.4 Score=31.84 Aligned_cols=79 Identities=15% Similarity=0.154 Sum_probs=48.1
Q ss_pred CCCCeEEEecCCCCHHHHHHHH----hCCEEEEEcCCCcHHHHHHHHHHHHHcCCceEEEEeecCCCCc--CcC------
Q 026274 69 FSGANVVELGAGTSLPGLVAAK----VGSNVTLTDDSNRIEVLKNMRRVCEMNKLNCRVMGLTWGFLDA--SIF------ 136 (241)
Q Consensus 69 ~~~~~VLElGcGtGl~sl~la~----~g~~V~~tD~~~~~~~l~~~~~n~~~n~~~~~~~~l~w~~~~~--~~~------ 136 (241)
+++++||=.|+ +|-+|..+++ .|++|++++.++ +.++.+...++..+.++.+...|..+... ...
T Consensus 8 ~~~k~vlItGa-~g~iG~~ia~~l~~~G~~V~~~~r~~--~~~~~~~~~i~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~ 84 (255)
T PRK07523 8 LTGRRALVTGS-SQGIGYALAEGLAQAGAEVILNGRDP--AKLAAAAESLKGQGLSAHALAFDVTDHDAVRAAIDAFEAE 84 (255)
T ss_pred CCCCEEEEECC-cchHHHHHHHHHHHcCCEEEEEeCCH--HHHHHHHHHHHhcCceEEEEEccCCCHHHHHHHHHHHHHh
Confidence 56889999996 4444555444 588999999985 34455555555445556666666655321 001
Q ss_pred CCCCcEEEEcCCcC
Q 026274 137 DLNPNIILGADVFY 150 (241)
Q Consensus 137 ~~~fDlIl~~dvly 150 (241)
-.+.|+++.+--..
T Consensus 85 ~~~~d~li~~ag~~ 98 (255)
T PRK07523 85 IGPIDILVNNAGMQ 98 (255)
T ss_pred cCCCCEEEECCCCC
Confidence 13578888665443
|
|
| >PLN02668 indole-3-acetate carboxyl methyltransferase | Back alignment and domain information |
|---|
Probab=88.85 E-value=6.4 Score=35.92 Aligned_cols=33 Identities=18% Similarity=0.240 Sum_probs=24.7
Q ss_pred CCeEEEecCCCCHHHHHHHHh------------C-----CEEEEEcCCCc
Q 026274 71 GANVVELGAGTSLPGLVAAKV------------G-----SNVTLTDDSNR 103 (241)
Q Consensus 71 ~~~VLElGcGtGl~sl~la~~------------g-----~~V~~tD~~~~ 103 (241)
..+|+|+|||+|..++.+... + .+|...|...+
T Consensus 64 ~~~iaDlGcs~G~ntl~~vs~iI~~i~~~~~~~~~~~pe~qv~~nDLP~N 113 (386)
T PLN02668 64 PFTAVDLGCSSGSNTIHIIDVIVKHMSKRYESAGLDPPEFSAFFSDLPSN 113 (386)
T ss_pred ceeEEEecCCCCccHHHHHHHHHHHHHHHhhhcCCCCCcceEEecCCCCC
Confidence 457999999999777665332 1 37999999864
|
|
| >COG1748 LYS9 Saccharopine dehydrogenase and related proteins [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=88.52 E-value=4.2 Score=37.12 Aligned_cols=74 Identities=20% Similarity=0.308 Sum_probs=45.6
Q ss_pred CeEEEecCC-CC-HHHHHHHHhC-CEEEEEcCCCcHHHHHHHHHHHHHcCCceEEEEeecCCCCc--CcCCCCCcEEEEc
Q 026274 72 ANVVELGAG-TS-LPGLVAAKVG-SNVTLTDDSNRIEVLKNMRRVCEMNKLNCRVMGLTWGFLDA--SIFDLNPNIILGA 146 (241)
Q Consensus 72 ~~VLElGcG-tG-l~sl~la~~g-~~V~~tD~~~~~~~l~~~~~n~~~n~~~~~~~~l~w~~~~~--~~~~~~fDlIl~~ 146 (241)
++||=|||| .| .++..||+.+ .+|++.|.+. +- +++-....+.++++..+|..+... ... ..+|+||.+
T Consensus 2 ~~ilviGaG~Vg~~va~~la~~~d~~V~iAdRs~--~~---~~~i~~~~~~~v~~~~vD~~d~~al~~li-~~~d~VIn~ 75 (389)
T COG1748 2 MKILVIGAGGVGSVVAHKLAQNGDGEVTIADRSK--EK---CARIAELIGGKVEALQVDAADVDALVALI-KDFDLVINA 75 (389)
T ss_pred CcEEEECCchhHHHHHHHHHhCCCceEEEEeCCH--HH---HHHHHhhccccceeEEecccChHHHHHHH-hcCCEEEEe
Confidence 479999996 44 3344456667 5999999995 23 333333334477788888776531 111 256888876
Q ss_pred CCcCC
Q 026274 147 DVFYD 151 (241)
Q Consensus 147 dvly~ 151 (241)
-.-|+
T Consensus 76 ~p~~~ 80 (389)
T COG1748 76 APPFV 80 (389)
T ss_pred CCchh
Confidence 55544
|
|
| >PRK06124 gluconate 5-dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=88.51 E-value=9.8 Score=31.70 Aligned_cols=79 Identities=14% Similarity=0.167 Sum_probs=49.5
Q ss_pred CCCCCeEEEecCCCCHHHHH----HHHhCCEEEEEcCCCcHHHHHHHHHHHHHcCCceEEEEeecCCCCc--CcC-----
Q 026274 68 RFSGANVVELGAGTSLPGLV----AAKVGSNVTLTDDSNRIEVLKNMRRVCEMNKLNCRVMGLTWGFLDA--SIF----- 136 (241)
Q Consensus 68 ~~~~~~VLElGcGtGl~sl~----la~~g~~V~~tD~~~~~~~l~~~~~n~~~n~~~~~~~~l~w~~~~~--~~~----- 136 (241)
..+++++|=.|++.|+ |.. +++.|++|++++.++ +.++.+...++..+..+.+...|..+... ...
T Consensus 8 ~~~~k~ilItGas~~I-G~~la~~l~~~G~~v~~~~r~~--~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~ 84 (256)
T PRK06124 8 SLAGQVALVTGSARGL-GFEIARALAGAGAHVLVNGRNA--ATLEAAVAALRAAGGAAEALAFDIADEEAVAAAFARIDA 84 (256)
T ss_pred CCCCCEEEEECCCchH-HHHHHHHHHHcCCeEEEEeCCH--HHHHHHHHHHHhcCCceEEEEccCCCHHHHHHHHHHHHH
Confidence 3578899999976554 443 344589999999985 45555555555555566677777765431 000
Q ss_pred -CCCCcEEEEcCCc
Q 026274 137 -DLNPNIILGADVF 149 (241)
Q Consensus 137 -~~~fDlIl~~dvl 149 (241)
-.++|.++.+-..
T Consensus 85 ~~~~id~vi~~ag~ 98 (256)
T PRK06124 85 EHGRLDILVNNVGA 98 (256)
T ss_pred hcCCCCEEEECCCC
Confidence 1367888866443
|
|
| >PF04989 CmcI: Cephalosporin hydroxylase; InterPro: IPR007072 This entry contains Rhamnosyl O-methyltransferase which catalyses the O-methylation of the hydroxyl group located on C-2 of the first rhamnosyl residue linked to the phenolic group of glycosylated phenolphthiocerol dimycocerosates (PGL) and p-hydroxybenzoic acid derivatives (p-HBAD) [] | Back alignment and domain information |
|---|
Probab=88.37 E-value=2.8 Score=34.79 Aligned_cols=102 Identities=14% Similarity=0.042 Sum_probs=51.4
Q ss_pred CCCCeEEEecCCCCHHHHHHHHh------CCEEEEEcCCCcHHHHHHHHHHHHHc--CCceEEEEeecCCCCc--CcC--
Q 026274 69 FSGANVVELGAGTSLPGLVAAKV------GSNVTLTDDSNRIEVLKNMRRVCEMN--KLNCRVMGLTWGFLDA--SIF-- 136 (241)
Q Consensus 69 ~~~~~VLElGcGtGl~sl~la~~------g~~V~~tD~~~~~~~l~~~~~n~~~n--~~~~~~~~l~w~~~~~--~~~-- 136 (241)
.+.+.|+|+|.=.|--.++.|.. .++|+++|++.. ..-+..++.+ ...+++.+.+..+... ...
T Consensus 31 ~kPd~IIE~Gi~~GGSli~~A~ml~~~~~~~~VigiDIdir----~~~~~a~e~hp~~~rI~~i~Gds~d~~~~~~v~~~ 106 (206)
T PF04989_consen 31 LKPDLIIETGIAHGGSLIFWASMLELLGGKGKVIGIDIDIR----PHNRKAIESHPMSPRITFIQGDSIDPEIVDQVREL 106 (206)
T ss_dssp H--SEEEEE--TTSHHHHHHHHHHHHTT---EEEEEES-GT----T--S-GGGG----TTEEEEES-SSSTHHHHTSGSS
T ss_pred hCCCeEEEEecCCCchHHHHHHHHHHhCCCceEEEEeCCcc----hhchHHHhhccccCceEEEECCCCCHHHHHHHHHh
Confidence 46679999999998777766653 248999999632 1111112211 2467777777655431 111
Q ss_pred -CCCCcEEEEcCCcCCCccHHHHHHHHHHHhhcCCCeEEEE
Q 026274 137 -DLNPNIILGADVFYDASAFDDLFATITYLLQSSPGSVFIT 176 (241)
Q Consensus 137 -~~~fDlIl~~dvly~~~~~~~ll~~~~~lL~~~~~~~~~~ 176 (241)
...--+++.-|.=+...+.-.-++....+++ +|..+++
T Consensus 107 ~~~~~~vlVilDs~H~~~hvl~eL~~y~plv~--~G~Y~IV 145 (206)
T PF04989_consen 107 ASPPHPVLVILDSSHTHEHVLAELEAYAPLVS--PGSYLIV 145 (206)
T ss_dssp ----SSEEEEESS----SSHHHHHHHHHHT----TT-EEEE
T ss_pred hccCCceEEEECCCccHHHHHHHHHHhCccCC--CCCEEEE
Confidence 1122345567777777888888888999987 5555553
|
Members of this family are about 220 amino acids long. It also includes the CmcI protein O85726 from SWISSPROT, which is presumed to represent the cephalosporin-7--hydroxylase []. However this has not been experimentally verified.; GO: 0008168 methyltransferase activity, 0008610 lipid biosynthetic process; PDB: 2BR4_B 2BR3_E 2BR5_E 2BM8_J 2BM9_E. |
| >KOG3115 consensus Methyltransferase-like protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=88.32 E-value=3 Score=34.78 Aligned_cols=105 Identities=15% Similarity=0.162 Sum_probs=58.5
Q ss_pred CeEEEecCCCCHHHHHHHHhCC--EEEEEcCCCcHHHHHHHHHHHHHcC-------C-ceEEEEeecCCCCcCcCC---C
Q 026274 72 ANVVELGAGTSLPGLVAAKVGS--NVTLTDDSNRIEVLKNMRRVCEMNK-------L-NCRVMGLTWGFLDASIFD---L 138 (241)
Q Consensus 72 ~~VLElGcGtGl~sl~la~~g~--~V~~tD~~~~~~~l~~~~~n~~~n~-------~-~~~~~~l~w~~~~~~~~~---~ 138 (241)
-.+.|||||-|-+-+.++-+-. -+++.+|-. .+-+.+++.+++-. . ++.+....-.......+. -
T Consensus 62 vefaDIGCGyGGLlv~Lsp~fPdtLiLGmEIR~--KVsdYVk~RI~ALR~~~a~~~~~ni~vlr~namk~lpn~f~kgqL 139 (249)
T KOG3115|consen 62 VEFADIGCGYGGLLMKLAPKFPDTLILGMEIRD--KVSDYVKERIQALRRTSAEGQYPNISVLRTNAMKFLPNFFEKGQL 139 (249)
T ss_pred ceEEeeccCccchhhhccccCccceeeeehhhH--HHHHHHHHHHHHHhccccccccccceeeeccchhhccchhhhccc
Confidence 4589999999988888887744 588888875 47777776665432 1 233333222222111111 1
Q ss_pred CCcEEEEcCCcCCCc------cHHHHHHHHHHHhhcCCCeEEEEEeec
Q 026274 139 NPNIILGADVFYDAS------AFDDLFATITYLLQSSPGSVFITTYHN 180 (241)
Q Consensus 139 ~fDlIl~~dvly~~~------~~~~ll~~~~~lL~~~~~~~~~~~~~~ 180 (241)
+-+..+--|.=|... .-..++....-+|+ .+|.++.....
T Consensus 140 skmff~fpdpHfk~~khk~rii~~~l~~eyay~l~--~gg~~ytitDv 185 (249)
T KOG3115|consen 140 SKMFFLFPDPHFKARKHKWRIITSTLLSEYAYVLR--EGGILYTITDV 185 (249)
T ss_pred ccceeecCChhHhhhhccceeechhHHHHHHhhhh--cCceEEEEeeH
Confidence 334444444433321 22356677777777 56666655444
|
|
| >KOG0725 consensus Reductases with broad range of substrate specificities [General function prediction only] | Back alignment and domain information |
|---|
Probab=88.30 E-value=12 Score=32.22 Aligned_cols=81 Identities=17% Similarity=0.115 Sum_probs=52.6
Q ss_pred CCCCCCeEEEecCCCCH---HHHHHHHhCCEEEEEcCCCcHHHHHHHHHHHHHcCC---ceEEEEeecCCCCc-------
Q 026274 67 YRFSGANVVELGAGTSL---PGLVAAKVGSNVTLTDDSNRIEVLKNMRRVCEMNKL---NCRVMGLTWGFLDA------- 133 (241)
Q Consensus 67 ~~~~~~~VLElGcGtGl---~sl~la~~g~~V~~tD~~~~~~~l~~~~~n~~~n~~---~~~~~~l~w~~~~~------- 133 (241)
..+.++.+|-=|+..|+ ++..+++.|++|+.++.++ +.++.+.......+. ++.....|..+...
T Consensus 4 ~~l~gkvalVTG~s~GIG~aia~~la~~Ga~v~i~~r~~--~~~~~~~~~~~~~~~~~~~~~~~~~Dv~~~~~~~~l~~~ 81 (270)
T KOG0725|consen 4 GRLAGKVALVTGGSSGIGKAIALLLAKAGAKVVITGRSE--ERLEETAQELGGLGYTGGKVLAIVCDVSKEVDVEKLVEF 81 (270)
T ss_pred ccCCCcEEEEECCCChHHHHHHHHHHHCCCEEEEEeCCH--HHHHHHHHHHHhcCCCCCeeEEEECcCCCHHHHHHHHHH
Confidence 35688999999999884 4677888999999999996 566655554444333 34444555443221
Q ss_pred --CcCCCCCcEEEEcCCc
Q 026274 134 --SIFDLNPNIILGADVF 149 (241)
Q Consensus 134 --~~~~~~fDlIl~~dvl 149 (241)
..+..+.|+++.+.-.
T Consensus 82 ~~~~~~GkidiLvnnag~ 99 (270)
T KOG0725|consen 82 AVEKFFGKIDILVNNAGA 99 (270)
T ss_pred HHHHhCCCCCEEEEcCCc
Confidence 1123578988866544
|
|
| >TIGR02354 thiF_fam2 thiamine biosynthesis protein ThiF, family 2 | Back alignment and domain information |
|---|
Probab=87.89 E-value=2.7 Score=34.63 Aligned_cols=35 Identities=23% Similarity=0.262 Sum_probs=28.6
Q ss_pred CCCCCCeEEEecCC-CC-HHHHHHHHhCC-EEEEEcCC
Q 026274 67 YRFSGANVVELGAG-TS-LPGLVAAKVGS-NVTLTDDS 101 (241)
Q Consensus 67 ~~~~~~~VLElGcG-tG-l~sl~la~~g~-~V~~tD~~ 101 (241)
...+..+|+=+||| .| -++..+++.|. ++++.|.+
T Consensus 17 ~~L~~~~V~IvG~GglGs~ia~~La~~Gvg~i~lvD~D 54 (200)
T TIGR02354 17 QKLEQATVAICGLGGLGSNVAINLARAGIGKLILVDFD 54 (200)
T ss_pred HHHhCCcEEEECcCHHHHHHHHHHHHcCCCEEEEECCC
Confidence 34567899999999 45 56777888888 79999998
|
Members of the HesA/MoeB/ThiF family of proteins (pfam00899) include a number of members encoded in the midst of thiamine biosynthetic operons. This mix of known and putative ThiF proteins shows a deep split in phylogenetic trees, with one the E. coli ThiF and the E. coli MoeB proteins seemingly more closely related than E. coli ThiF and Campylobacter (for example) ThiF. This model represents the divergent clade of putative ThiF proteins such found in Campylobacter. |
| >PRK01438 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional | Back alignment and domain information |
|---|
Probab=87.48 E-value=2.7 Score=39.13 Aligned_cols=75 Identities=19% Similarity=0.314 Sum_probs=45.3
Q ss_pred CCCCCCeEEEecCC-CCH-HHHHHHHhCCEEEEEcCCCcHHHHHHHHHHHHHcCCceEEEEeecCCCCcCcCCCCCcEEE
Q 026274 67 YRFSGANVVELGAG-TSL-PGLVAAKVGSNVTLTDDSNRIEVLKNMRRVCEMNKLNCRVMGLTWGFLDASIFDLNPNIIL 144 (241)
Q Consensus 67 ~~~~~~~VLElGcG-tGl-~sl~la~~g~~V~~tD~~~~~~~l~~~~~n~~~n~~~~~~~~l~w~~~~~~~~~~~fDlIl 144 (241)
...++++|+=+|+| +|+ ++..|++.|.+|+++|.++. +....+.+.++..++.+.. +.... ....+|+|+
T Consensus 12 ~~~~~~~v~viG~G~~G~~~A~~L~~~G~~V~~~d~~~~-~~~~~~~~~l~~~gv~~~~-----~~~~~--~~~~~D~Vv 83 (480)
T PRK01438 12 SDWQGLRVVVAGLGVSGFAAADALLELGARVTVVDDGDD-ERHRALAAILEALGATVRL-----GPGPT--LPEDTDLVV 83 (480)
T ss_pred cCcCCCEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCch-hhhHHHHHHHHHcCCEEEE-----CCCcc--ccCCCCEEE
Confidence 34567899999998 664 34455567999999997762 3444444445555654421 11101 123589888
Q ss_pred EcCCc
Q 026274 145 GADVF 149 (241)
Q Consensus 145 ~~dvl 149 (241)
.+.-+
T Consensus 84 ~s~Gi 88 (480)
T PRK01438 84 TSPGW 88 (480)
T ss_pred ECCCc
Confidence 77554
|
|
| >PRK12549 shikimate 5-dehydrogenase; Reviewed | Back alignment and domain information |
|---|
Probab=87.39 E-value=16 Score=31.71 Aligned_cols=132 Identities=19% Similarity=0.048 Sum_probs=66.9
Q ss_pred HHHHHHHHhccCCCCCCeEEEecCC-CC-HHHHHHHHhCC-EEEEEcCCCcHHHHHHHHHHHHHcCCceEEEEeecCCCC
Q 026274 56 VILAEYVWQQRYRFSGANVVELGAG-TS-LPGLVAAKVGS-NVTLTDDSNRIEVLKNMRRVCEMNKLNCRVMGLTWGFLD 132 (241)
Q Consensus 56 ~~L~~~l~~~~~~~~~~~VLElGcG-tG-l~sl~la~~g~-~V~~tD~~~~~~~l~~~~~n~~~n~~~~~~~~l~w~~~~ 132 (241)
.-+..-|.......++++|+=|||| .| .+...+++.|+ +|+.+|.+. +-.+.+.+.+........+ ..|.+..
T Consensus 112 ~G~~~~l~~~~~~~~~k~vlIlGaGGaaraia~aL~~~G~~~I~I~nR~~--~ka~~la~~l~~~~~~~~~--~~~~~~~ 187 (284)
T PRK12549 112 SGFAESFRRGLPDASLERVVQLGAGGAGAAVAHALLTLGVERLTIFDVDP--ARAAALADELNARFPAARA--TAGSDLA 187 (284)
T ss_pred HHHHHHHHhhccCccCCEEEEECCcHHHHHHHHHHHHcCCCEEEEECCCH--HHHHHHHHHHHhhCCCeEE--EeccchH
Confidence 3344444333334567899999999 33 34445556787 899999985 3334343333222222222 2233211
Q ss_pred cCcCCCCCcEEEEcCCcCCCccH-HHHHHHHHHHhhcCCCe-EEEEEeeccCchhHHHHHHHHcCCEEEE
Q 026274 133 ASIFDLNPNIILGADVFYDASAF-DDLFATITYLLQSSPGS-VFITTYHNRSGHHLIEFLMVKWGLKCVK 200 (241)
Q Consensus 133 ~~~~~~~fDlIl~~dvly~~~~~-~~ll~~~~~lL~~~~~~-~~~~~~~~r~~~~~~~~~~~~~g~~~~~ 200 (241)
.. -..+|+||.+-++--.+.. .++- ...++ ++. ++=+.|.+..+ .+...+++.|..+..
T Consensus 188 ~~--~~~aDiVInaTp~Gm~~~~~~~~~---~~~l~--~~~~v~DivY~P~~T--~ll~~A~~~G~~~~~ 248 (284)
T PRK12549 188 AA--LAAADGLVHATPTGMAKHPGLPLP---AELLR--PGLWVADIVYFPLET--ELLRAARALGCRTLD 248 (284)
T ss_pred hh--hCCCCEEEECCcCCCCCCCCCCCC---HHHcC--CCcEEEEeeeCCCCC--HHHHHHHHCCCeEec
Confidence 11 1358999987655421111 0111 13344 333 33355655443 344556778876654
|
|
| >KOG2651 consensus rRNA adenine N-6-methyltransferase [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=86.91 E-value=2.1 Score=38.87 Aligned_cols=33 Identities=24% Similarity=0.276 Sum_probs=28.6
Q ss_pred CCCeEEEecCCCCHHHHHHHH-hCCEEEEEcCCC
Q 026274 70 SGANVVELGAGTSLPGLVAAK-VGSNVTLTDDSN 102 (241)
Q Consensus 70 ~~~~VLElGcGtGl~sl~la~-~g~~V~~tD~~~ 102 (241)
.-..|+|+|+|.|-++-+++- .|.+|.++|-+.
T Consensus 153 gi~~vvD~GaG~G~LSr~lSl~y~lsV~aIegsq 186 (476)
T KOG2651|consen 153 GIDQVVDVGAGQGHLSRFLSLGYGLSVKAIEGSQ 186 (476)
T ss_pred CCCeeEEcCCCchHHHHHHhhccCceEEEeccch
Confidence 346799999999999999886 477999999995
|
|
| >PRK09880 L-idonate 5-dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=86.75 E-value=10 Score=33.38 Aligned_cols=43 Identities=26% Similarity=0.319 Sum_probs=29.5
Q ss_pred CCCCCeEEEecCC-CCHHHHHHHH-hCC-EEEEEcCCCcHHHHHHHHH
Q 026274 68 RFSGANVVELGAG-TSLPGLVAAK-VGS-NVTLTDDSNRIEVLKNMRR 112 (241)
Q Consensus 68 ~~~~~~VLElGcG-tGl~sl~la~-~g~-~V~~tD~~~~~~~l~~~~~ 112 (241)
..++.+||=.||| .|+.++.+|+ .|+ +|+++|.++ +-++.+++
T Consensus 167 ~~~g~~VlV~G~G~vG~~aiqlak~~G~~~Vi~~~~~~--~~~~~a~~ 212 (343)
T PRK09880 167 DLQGKRVFVSGVGPIGCLIVAAVKTLGAAEIVCADVSP--RSLSLARE 212 (343)
T ss_pred CCCCCEEEEECCCHHHHHHHHHHHHcCCcEEEEEeCCH--HHHHHHHH
Confidence 3468889988886 5556666666 377 699999985 45555443
|
|
| >PRK10458 DNA cytosine methylase; Provisional | Back alignment and domain information |
|---|
Probab=86.72 E-value=21 Score=33.48 Aligned_cols=42 Identities=12% Similarity=0.073 Sum_probs=34.1
Q ss_pred CCeEEEecCCCCHHHHHHHHhCC-EEEEEcCCCcHHHHHHHHHHH
Q 026274 71 GANVVELGAGTSLPGLVAAKVGS-NVTLTDDSNRIEVLKNMRRVC 114 (241)
Q Consensus 71 ~~~VLElGcGtGl~sl~la~~g~-~V~~tD~~~~~~~l~~~~~n~ 114 (241)
..+++||-||.|-+++.+-+.|. -|.++|+++ .+.+.-+.|.
T Consensus 88 ~~~~iDLFsGiGGl~lGfe~aG~~~v~a~Eid~--~A~~TY~~N~ 130 (467)
T PRK10458 88 AFRFIDLFAGIGGIRRGFEAIGGQCVFTSEWNK--HAVRTYKANW 130 (467)
T ss_pred CceEEEeCcCccHHHHHHHHcCCEEEEEEechH--HHHHHHHHHc
Confidence 45899999999999999988888 478899995 4666666664
|
|
| >PF05206 TRM13: Methyltransferase TRM13; InterPro: IPR007871 This entry consists of eukaryotic and bacterial proteins that specifically methylates guanosine-4 in various tRNAs with a Gly(CCG), His or Pro signatures [] | Back alignment and domain information |
|---|
Probab=86.60 E-value=1.6 Score=37.58 Aligned_cols=43 Identities=23% Similarity=0.161 Sum_probs=32.2
Q ss_pred HHHHhccCCCCCCeEEEecCCCCHHHHHHHHhC-------CEEEEEcCCC
Q 026274 60 EYVWQQRYRFSGANVVELGAGTSLPGLVAAKVG-------SNVTLTDDSN 102 (241)
Q Consensus 60 ~~l~~~~~~~~~~~VLElGcGtGl~sl~la~~g-------~~V~~tD~~~ 102 (241)
..|....-..++..++|+|||.|.+|-++++.- ..++++|...
T Consensus 8 ~~l~~~~ll~~~~~~vEfGaGrg~LS~~v~~~~~~~~~~~~~~~lIDR~~ 57 (259)
T PF05206_consen 8 GNLEQRGLLNPDSCFVEFGAGRGELSRWVAQALQEDKPSNSRFVLIDRAS 57 (259)
T ss_pred HHHHHcCCCCCCCEEEEECCCchHHHHHHHHHhhhcccCCccEEEEecCc
Confidence 344443333456689999999999999999863 3799999975
|
The alignment contains some conserved cysteines and histidines that might form a zinc binding site.; GO: 0008168 methyltransferase activity, 0008033 tRNA processing |
| >cd08281 liver_ADH_like1 Zinc-dependent alcohol dehydrogenases (ADH) and class III ADG (AKA formaldehyde dehydrogenase) | Back alignment and domain information |
|---|
Probab=86.44 E-value=2.2 Score=38.12 Aligned_cols=43 Identities=28% Similarity=0.350 Sum_probs=28.5
Q ss_pred CCCCCCeEEEecCC-CCHHHHHHHH-hCC-EEEEEcCCCcHHHHHHHH
Q 026274 67 YRFSGANVVELGAG-TSLPGLVAAK-VGS-NVTLTDDSNRIEVLKNMR 111 (241)
Q Consensus 67 ~~~~~~~VLElGcG-tGl~sl~la~-~g~-~V~~tD~~~~~~~l~~~~ 111 (241)
....+.+||=.|+| .|++.+.+|+ .|+ +|+++|.++ +-++.++
T Consensus 188 ~i~~g~~VlV~G~G~vG~~a~~lak~~G~~~Vi~~~~~~--~r~~~a~ 233 (371)
T cd08281 188 GVRPGQSVAVVGLGGVGLSALLGAVAAGASQVVAVDLNE--DKLALAR 233 (371)
T ss_pred CCCCCCEEEEECCCHHHHHHHHHHHHcCCCcEEEEcCCH--HHHHHHH
Confidence 34567888888876 4555555555 488 699999985 3444443
|
NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. This group contains members identified as zinc dependent alcohol dehydrogenases (ADH), and class III ADG (aka formaldehyde dehydrogenase, FDH). Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. Class III ADH are also know as glutathione-dependent formaldehyde dehyd |
| >PRK08267 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=86.05 E-value=11 Score=31.60 Aligned_cols=74 Identities=15% Similarity=0.060 Sum_probs=43.5
Q ss_pred CeEEEecCCCCH---HHHHHHHhCCEEEEEcCCCcHHHHHHHHHHHHHcCCceEEEEeecCCCCc--C----c---CCCC
Q 026274 72 ANVVELGAGTSL---PGLVAAKVGSNVTLTDDSNRIEVLKNMRRVCEMNKLNCRVMGLTWGFLDA--S----I---FDLN 139 (241)
Q Consensus 72 ~~VLElGcGtGl---~sl~la~~g~~V~~tD~~~~~~~l~~~~~n~~~n~~~~~~~~l~w~~~~~--~----~---~~~~ 139 (241)
+++|=.|++.|+ ++..+++.|++|++++.++ +-++.+..... +..+.+...|..+... . . ...+
T Consensus 2 k~vlItGasg~iG~~la~~l~~~G~~V~~~~r~~--~~~~~~~~~~~--~~~~~~~~~D~~~~~~v~~~~~~~~~~~~~~ 77 (260)
T PRK08267 2 KSIFITGAASGIGRATALLFAAEGWRVGAYDINE--AGLAALAAELG--AGNAWTGALDVTDRAAWDAALADFAAATGGR 77 (260)
T ss_pred cEEEEeCCCchHHHHHHHHHHHCCCeEEEEeCCH--HHHHHHHHHhc--CCceEEEEecCCCHHHHHHHHHHHHHHcCCC
Confidence 467888876542 2333445588999999885 35555444332 4456677777765431 0 0 0246
Q ss_pred CcEEEEcCCc
Q 026274 140 PNIILGADVF 149 (241)
Q Consensus 140 fDlIl~~dvl 149 (241)
+|+++.+--+
T Consensus 78 id~vi~~ag~ 87 (260)
T PRK08267 78 LDVLFNNAGI 87 (260)
T ss_pred CCEEEECCCC
Confidence 7988865443
|
|
| >PRK07326 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=85.86 E-value=13 Score=30.45 Aligned_cols=76 Identities=12% Similarity=0.034 Sum_probs=43.2
Q ss_pred CCCeEEEecCCCCHHHHHHH----HhCCEEEEEcCCCcHHHHHHHHHHHHHcCCceEEEEeecCCCCc--CcC------C
Q 026274 70 SGANVVELGAGTSLPGLVAA----KVGSNVTLTDDSNRIEVLKNMRRVCEMNKLNCRVMGLTWGFLDA--SIF------D 137 (241)
Q Consensus 70 ~~~~VLElGcGtGl~sl~la----~~g~~V~~tD~~~~~~~l~~~~~n~~~n~~~~~~~~l~w~~~~~--~~~------~ 137 (241)
.+++||=.|+ +|.+|..++ ..|++|++++.++ +-++.+.+.+... ..+.+...|..+... ... -
T Consensus 5 ~~~~ilItGa-tg~iG~~la~~l~~~g~~V~~~~r~~--~~~~~~~~~l~~~-~~~~~~~~D~~~~~~~~~~~~~~~~~~ 80 (237)
T PRK07326 5 KGKVALITGG-SKGIGFAIAEALLAEGYKVAITARDQ--KELEEAAAELNNK-GNVLGLAADVRDEADVQRAVDAIVAAF 80 (237)
T ss_pred CCCEEEEECC-CCcHHHHHHHHHHHCCCEEEEeeCCH--HHHHHHHHHHhcc-CcEEEEEccCCCHHHHHHHHHHHHHHc
Confidence 4678999996 555555544 3488999999885 3444444333322 345555666554321 001 1
Q ss_pred CCCcEEEEcCCc
Q 026274 138 LNPNIILGADVF 149 (241)
Q Consensus 138 ~~fDlIl~~dvl 149 (241)
..+|+|+.+.-.
T Consensus 81 ~~~d~vi~~ag~ 92 (237)
T PRK07326 81 GGLDVLIANAGV 92 (237)
T ss_pred CCCCEEEECCCC
Confidence 268888866443
|
|
| >COG4301 Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=85.41 E-value=12 Score=32.20 Aligned_cols=114 Identities=17% Similarity=0.187 Sum_probs=65.3
Q ss_pred CCCCCCeEEEecCCCCHHHHH----HHHhCC--EEEEEcCCCcHHHHHHHHHHHHHc--CCceEEEEeecCCCCcCcCCC
Q 026274 67 YRFSGANVVELGAGTSLPGLV----AAKVGS--NVTLTDDSNRIEVLKNMRRVCEMN--KLNCRVMGLTWGFLDASIFDL 138 (241)
Q Consensus 67 ~~~~~~~VLElGcGtGl~sl~----la~~g~--~V~~tD~~~~~~~l~~~~~n~~~n--~~~~~~~~l~w~~~~~~~~~~ 138 (241)
....+...+|||+|+-.-.-. ++..|. ..+.+|++. ..|....+.+... ++.+.....+...........
T Consensus 75 ~~~g~~~lveLGsGns~Ktr~Llda~~~~~~~~ryvpiDv~a--~iL~~ta~ai~~~y~~l~v~~l~~~~~~~La~~~~~ 152 (321)
T COG4301 75 SITGACTLVELGSGNSTKTRILLDALAHRGSLLRYVPIDVSA--SILRATATAILREYPGLEVNALCGDYELALAELPRG 152 (321)
T ss_pred HhhCcceEEEecCCccHHHHHHHHHhhhcCCcceeeeecccH--HHHHHHHHHHHHhCCCCeEeehhhhHHHHHhcccCC
Confidence 344578999999997744333 344454 899999995 4665444433333 334433333333222222221
Q ss_pred CCcE-EEEcCCc--CCCccHHHHHHHHHHHhhcCCCeEEEEEeeccCch
Q 026274 139 NPNI-ILGADVF--YDASAFDDLFATITYLLQSSPGSVFITTYHNRSGH 184 (241)
Q Consensus 139 ~fDl-Il~~dvl--y~~~~~~~ll~~~~~lL~~~~~~~~~~~~~~r~~~ 184 (241)
+--+ ++..-.+ +.+..-..++..+...++ ||-.|+++...+...
T Consensus 153 ~~Rl~~flGStlGN~tp~e~~~Fl~~l~~a~~--pGd~~LlGvDl~k~A 199 (321)
T COG4301 153 GRRLFVFLGSTLGNLTPGECAVFLTQLRGALR--PGDYFLLGVDLRKPA 199 (321)
T ss_pred CeEEEEEecccccCCChHHHHHHHHHHHhcCC--CcceEEEeccccCHH
Confidence 2222 2222333 446677888899999987 677788776555543
|
|
| >PRK07109 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=85.34 E-value=19 Score=31.78 Aligned_cols=79 Identities=14% Similarity=0.021 Sum_probs=49.6
Q ss_pred CCCCeEEEecCCCCHH---HHHHHHhCCEEEEEcCCCcHHHHHHHHHHHHHcCCceEEEEeecCCCCcC--cC------C
Q 026274 69 FSGANVVELGAGTSLP---GLVAAKVGSNVTLTDDSNRIEVLKNMRRVCEMNKLNCRVMGLTWGFLDAS--IF------D 137 (241)
Q Consensus 69 ~~~~~VLElGcGtGl~---sl~la~~g~~V~~tD~~~~~~~l~~~~~n~~~n~~~~~~~~l~w~~~~~~--~~------~ 137 (241)
.++++||=.|++.|+- ...+++.|++|++++.++ +-++.+.+.+...+.++.+...|..+...- .. -
T Consensus 6 l~~k~vlITGas~gIG~~la~~la~~G~~Vvl~~R~~--~~l~~~~~~l~~~g~~~~~v~~Dv~d~~~v~~~~~~~~~~~ 83 (334)
T PRK07109 6 IGRQVVVITGASAGVGRATARAFARRGAKVVLLARGE--EGLEALAAEIRAAGGEALAVVADVADAEAVQAAADRAEEEL 83 (334)
T ss_pred CCCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEECCH--HHHHHHHHHHHHcCCcEEEEEecCCCHHHHHHHHHHHHHHC
Confidence 4677899999766532 233455689999999885 456656555655566666667776654310 00 1
Q ss_pred CCCcEEEEcCCc
Q 026274 138 LNPNIILGADVF 149 (241)
Q Consensus 138 ~~fDlIl~~dvl 149 (241)
.++|+++.+--+
T Consensus 84 g~iD~lInnAg~ 95 (334)
T PRK07109 84 GPIDTWVNNAMV 95 (334)
T ss_pred CCCCEEEECCCc
Confidence 368998866543
|
|
| >TIGR00561 pntA NAD(P) transhydrogenase, alpha subunit | Back alignment and domain information |
|---|
Probab=84.59 E-value=8.8 Score=36.38 Aligned_cols=92 Identities=18% Similarity=0.214 Sum_probs=53.5
Q ss_pred CCCCeEEEecCC-CCHHHHHHHH-hCCEEEEEcCCCcHHHHHHHHHHHHHcCCceEEEEeecCCCC-----------cC-
Q 026274 69 FSGANVVELGAG-TSLPGLVAAK-VGSNVTLTDDSNRIEVLKNMRRVCEMNKLNCRVMGLTWGFLD-----------AS- 134 (241)
Q Consensus 69 ~~~~~VLElGcG-tGl~sl~la~-~g~~V~~tD~~~~~~~l~~~~~n~~~n~~~~~~~~l~w~~~~-----------~~- 134 (241)
..+.+|+=+||| .|+..+.+++ +|+.|+++|.++ +.++.++. -+. ++..++..+.. .+
T Consensus 162 vp~akVlViGaG~iGl~Aa~~ak~lGA~V~v~d~~~--~rle~a~~----lGa--~~v~v~~~e~g~~~~gYa~~~s~~~ 233 (511)
T TIGR00561 162 VPPAKVLVIGAGVAGLAAIGAANSLGAIVRAFDTRP--EVKEQVQS----MGA--EFLELDFKEEGGSGDGYAKVMSEEF 233 (511)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCH--HHHHHHHH----cCC--eEEeccccccccccccceeecCHHH
Confidence 356799999999 6777776666 589999999995 35444443 222 22222211100 00
Q ss_pred -------cC--CCCCcEEEEcCCcCCCccHHHHHHHHHHHhhc
Q 026274 135 -------IF--DLNPNIILGADVFYDASAFDDLFATITYLLQS 168 (241)
Q Consensus 135 -------~~--~~~fDlIl~~dvly~~~~~~~ll~~~~~lL~~ 168 (241)
.. -..+|+|+.+-.+--.+...-+.+...+.+++
T Consensus 234 ~~~~~~~~~e~~~~~DIVI~TalipG~~aP~Lit~emv~~MKp 276 (511)
T TIGR00561 234 IAAEMELFAAQAKEVDIIITTALIPGKPAPKLITEEMVDSMKA 276 (511)
T ss_pred HHHHHHHHHHHhCCCCEEEECcccCCCCCCeeehHHHHhhCCC
Confidence 00 13689998776554433333355666777774
|
In some species, such as Rhodospirillum rubrum, the alpha chain is replaced by two shorter chains, both with some homology to the full-length alpha chain modeled here. These score below the trusted cutoff. |
| >PLN02740 Alcohol dehydrogenase-like | Back alignment and domain information |
|---|
Probab=84.59 E-value=2.4 Score=38.21 Aligned_cols=43 Identities=21% Similarity=0.258 Sum_probs=29.4
Q ss_pred CCCCCCeEEEecCC-CCHHHHHHHH-hCC-EEEEEcCCCcHHHHHHHH
Q 026274 67 YRFSGANVVELGAG-TSLPGLVAAK-VGS-NVTLTDDSNRIEVLKNMR 111 (241)
Q Consensus 67 ~~~~~~~VLElGcG-tGl~sl~la~-~g~-~V~~tD~~~~~~~l~~~~ 111 (241)
...+|.+||=.||| .|+..+.+|+ .|+ +|+++|.++ +-++.++
T Consensus 195 ~~~~g~~VlV~G~G~vG~~a~q~ak~~G~~~Vi~~~~~~--~r~~~a~ 240 (381)
T PLN02740 195 NVQAGSSVAIFGLGAVGLAVAEGARARGASKIIGVDINP--EKFEKGK 240 (381)
T ss_pred CCCCCCEEEEECCCHHHHHHHHHHHHCCCCcEEEEcCCh--HHHHHHH
Confidence 44568899999876 4555555555 477 699999985 3555554
|
|
| >COG0286 HsdM Type I restriction-modification system methyltransferase subunit [Defense mechanisms] | Back alignment and domain information |
|---|
Probab=84.44 E-value=6.2 Score=37.18 Aligned_cols=105 Identities=11% Similarity=0.048 Sum_probs=65.4
Q ss_pred CCCeEEEecCCCCHHHHHHHH-hC-----CEEEEEcCCCcHHHHHHHHHHHHHcCCceEEEEeecCCCCc-Cc-----CC
Q 026274 70 SGANVVELGAGTSLPGLVAAK-VG-----SNVTLTDDSNRIEVLKNMRRVCEMNKLNCRVMGLTWGFLDA-SI-----FD 137 (241)
Q Consensus 70 ~~~~VLElGcGtGl~sl~la~-~g-----~~V~~tD~~~~~~~l~~~~~n~~~n~~~~~~~~l~w~~~~~-~~-----~~ 137 (241)
...+|.|--||+|-+-+.+++ .+ ....|.++++ .....++.|.-.++++. ......++... +. ..
T Consensus 186 ~~~~i~DpacGsgg~l~~a~~~~~~~~~~~~~yGqE~~~--~t~~l~~mN~~lhgi~~-~~~i~~~dtl~~~~~~~~~~~ 262 (489)
T COG0286 186 PRNSIYDPACGSGGMLLQAAKYLKRHQDEIFIYGQEIND--TTYRLAKMNLILHGIEG-DANIRHGDTLSNPKHDDKDDK 262 (489)
T ss_pred CCCeecCCCCchhHHHHHHHHHHHhhccceeEEEEeCCH--HHHHHHHHHHHHhCCCc-cccccccccccCCcccccCCc
Confidence 445899999999954444333 22 3588999985 68999999999998864 11222222111 11 22
Q ss_pred CCCcEEEEcCCcCCC-------------------------ccHHHHHHHHHHHhhcCCCeEEEEE
Q 026274 138 LNPNIILGADVFYDA-------------------------SAFDDLFATITYLLQSSPGSVFITT 177 (241)
Q Consensus 138 ~~fDlIl~~dvly~~-------------------------~~~~~ll~~~~~lL~~~~~~~~~~~ 177 (241)
.+||+|++++++.-. ......+..+...|++++.+.++++
T Consensus 263 ~~~D~viaNPPf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~af~~h~~~~l~~~g~aaivl~ 327 (489)
T COG0286 263 GKFDFVIANPPFSGKGWGGDLLESEQDERFFFYGVFPTKNSADLAFLQHILYKLKPGGRAAIVLP 327 (489)
T ss_pred cceeEEEeCCCCCccccccccccccccccccccCCCCCCCchHHHHHHHHHHhcCCCceEEEEec
Confidence 479999998887510 1225566667777765444555555
|
|
| >PF11599 AviRa: RRNA methyltransferase AviRa; InterPro: IPR024268 This family of proteins includes the methyltransferase AviRa from Streptomyces viridochromogenes | Back alignment and domain information |
|---|
Probab=84.39 E-value=5.2 Score=33.64 Aligned_cols=45 Identities=13% Similarity=0.104 Sum_probs=31.6
Q ss_pred CCCeEEEecCCCCHHHHHHHHh-C---CEEEEEcCCCcHHHHHHHHHHHHH
Q 026274 70 SGANVVELGAGTSLPGLVAAKV-G---SNVTLTDDSNRIEVLKNMRRVCEM 116 (241)
Q Consensus 70 ~~~~VLElGcGtGl~sl~la~~-g---~~V~~tD~~~~~~~l~~~~~n~~~ 116 (241)
.+-++-|=.||.|.+--.+.-+ + ..|+++|+++ ++|+.+++|..+
T Consensus 51 ~p~tLyDPCCG~gyLLTVlGLLh~~~l~~v~aSDId~--~aL~lA~kNL~L 99 (246)
T PF11599_consen 51 GPYTLYDPCCGSGYLLTVLGLLHRRRLRRVYASDIDE--DALELARKNLSL 99 (246)
T ss_dssp S-EEEEETT-TTSHHHHHHHHHTGGGEEEEEEEES-H--HHHHHHHHHHHC
T ss_pred CCeeeeccCCCccHHHHHHHHhhhHHHHhHhcccCCH--HHHHHHHHhhhh
Confidence 3457999999999554444433 2 2799999995 799999999865
|
This protein mediates the resistance to the antibiotic avilamycin. AviRa methylates a specific guanine base within the peptidyl-transferase loop of the 23S ribosomal RNA [].; PDB: 1O9H_A 1O9G_A. |
| >PRK06181 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=84.19 E-value=17 Score=30.30 Aligned_cols=75 Identities=15% Similarity=0.097 Sum_probs=42.8
Q ss_pred CeEEEecCCCCHHHHHH----HHhCCEEEEEcCCCcHHHHHHHHHHHHHcCCceEEEEeecCCCCc--CcC------CCC
Q 026274 72 ANVVELGAGTSLPGLVA----AKVGSNVTLTDDSNRIEVLKNMRRVCEMNKLNCRVMGLTWGFLDA--SIF------DLN 139 (241)
Q Consensus 72 ~~VLElGcGtGl~sl~l----a~~g~~V~~tD~~~~~~~l~~~~~n~~~n~~~~~~~~l~w~~~~~--~~~------~~~ 139 (241)
++||=.|+.. .+|..+ ++.|++|++++.++ .-.+.+...+...+..+.+...|..+... ... -..
T Consensus 2 ~~vlVtGasg-~iG~~la~~l~~~g~~Vi~~~r~~--~~~~~~~~~l~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~~~~~ 78 (263)
T PRK06181 2 KVVIITGASE-GIGRALAVRLARAGAQLVLAARNE--TRLASLAQELADHGGEALVVPTDVSDAEACERLIEAAVARFGG 78 (263)
T ss_pred CEEEEecCCc-HHHHHHHHHHHHCCCEEEEEeCCH--HHHHHHHHHHHhcCCcEEEEEccCCCHHHHHHHHHHHHHHcCC
Confidence 4677777544 444444 44588999999885 34444444444444456666666655321 000 125
Q ss_pred CcEEEEcCCc
Q 026274 140 PNIILGADVF 149 (241)
Q Consensus 140 fDlIl~~dvl 149 (241)
.|+|+.+-..
T Consensus 79 id~vi~~ag~ 88 (263)
T PRK06181 79 IDILVNNAGI 88 (263)
T ss_pred CCEEEECCCc
Confidence 7888866544
|
|
| >TIGR01809 Shik-DH-AROM shikimate-5-dehydrogenase, fungal AROM-type | Back alignment and domain information |
|---|
Probab=83.95 E-value=28 Score=30.20 Aligned_cols=125 Identities=18% Similarity=0.245 Sum_probs=61.0
Q ss_pred CCCCCeEEEecCC-CC-HHHHHHHHhCC-EEEEEcCCCcHHHHHHHHHHHHHcCCceEEEEeecCCCCcCcCCCCCcEEE
Q 026274 68 RFSGANVVELGAG-TS-LPGLVAAKVGS-NVTLTDDSNRIEVLKNMRRVCEMNKLNCRVMGLTWGFLDASIFDLNPNIIL 144 (241)
Q Consensus 68 ~~~~~~VLElGcG-tG-l~sl~la~~g~-~V~~tD~~~~~~~l~~~~~n~~~n~~~~~~~~l~w~~~~~~~~~~~fDlIl 144 (241)
..++++||=|||| +| .+...+++.|+ +|+.++.+. +-.+.+.+..... . .+..+.+.+.... .-..+|+||
T Consensus 122 ~~~~k~vlvlGaGGaarai~~aL~~~G~~~i~I~nRt~--~ka~~La~~~~~~-~--~~~~~~~~~~~~~-~~~~~DiVI 195 (282)
T TIGR01809 122 PLAGFRGLVIGAGGTSRAAVYALASLGVTDITVINRNP--DKLSRLVDLGVQV-G--VITRLEGDSGGLA-IEKAAEVLV 195 (282)
T ss_pred ccCCceEEEEcCcHHHHHHHHHHHHcCCCeEEEEeCCH--HHHHHHHHHhhhc-C--cceeccchhhhhh-cccCCCEEE
Confidence 3578899999999 44 33444566786 799998884 2223332222211 1 1122222111011 113689999
Q ss_pred EcCCcCCCccHHHHHHHHHHHh---hcCCCeEEEEEeeccCchhHHHHHHHHcCCEEEE
Q 026274 145 GADVFYDASAFDDLFATITYLL---QSSPGSVFITTYHNRSGHHLIEFLMVKWGLKCVK 200 (241)
Q Consensus 145 ~~dvly~~~~~~~ll~~~~~lL---~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~ 200 (241)
.+=.+-.+.....+......++ .++...++=+.|.++.+ .+....++.|..+..
T Consensus 196 naTp~g~~~~~~~l~~~~~~~~~~~~~~~~~v~D~vY~P~~T--~ll~~A~~~G~~~~~ 252 (282)
T TIGR01809 196 STVPADVPADYVDLFATVPFLLLKRKSSEGIFLDAAYDPWPT--PLVAIVSAAGWRVIS 252 (282)
T ss_pred ECCCCCCCCCHHHhhhhhhhhccccCCCCcEEEEEeeCCCCC--HHHHHHHHCCCEEEC
Confidence 8866654433322211111111 01122233355655544 344556778876654
|
This model represents a clade of shikimate-5-dehydrogenases found in Corynebacterium, Mycobacteria and fungi. The fungal sequences are pentafunctional proteins known as AroM which contain the central five seven steps in the chorismate biosynthesis pathway. The Corynebacterium and Mycobacterial sequences represent the sole shikimate-5-dehydrogenases in species which otherwise have every enzyme of the chorismate biosynthesis pathway. |
| >PF03492 Methyltransf_7: SAM dependent carboxyl methyltransferase; InterPro: IPR005299 This family of plant methyltransferases contains enzymes that act on a variety of substrates including salicylic acid, jasmonic acid and 7-Methylxanthine | Back alignment and domain information |
|---|
Probab=83.82 E-value=12 Score=33.52 Aligned_cols=81 Identities=12% Similarity=0.096 Sum_probs=40.5
Q ss_pred CCCeEEEecCCCCHHHHHHHHh------------C------CEEEEEcCCCcHH---HHHHHHHHHHH--cCCceEEEEe
Q 026274 70 SGANVVELGAGTSLPGLVAAKV------------G------SNVTLTDDSNRIE---VLKNMRRVCEM--NKLNCRVMGL 126 (241)
Q Consensus 70 ~~~~VLElGcGtGl~sl~la~~------------g------~~V~~tD~~~~~~---~l~~~~~n~~~--n~~~~~~~~l 126 (241)
+.-+|+|+||.+|-.++.+... + .+|+..|+..+ + +...+-.+... ...++ +...
T Consensus 16 ~~~~iaD~GcS~G~Nsl~~~~~ii~~i~~~~~~~~~~~~~e~~v~~nDlP~N-DFn~lF~~l~~~~~~~~~~~~~-f~~g 93 (334)
T PF03492_consen 16 KPFRIADLGCSSGPNSLLAVSNIIDAIRERCRSSNNQPPPEFQVFFNDLPSN-DFNTLFKSLPSFQQSLKKFRNY-FVSG 93 (334)
T ss_dssp TEEEEEEES--SSHHHHHHHHHHHHHHHHHHHCTT-SS--EEEEEEEE-TTS--HHHHHHCHHHHHHHHHHTTSE-EEEE
T ss_pred CceEEEecCCCCCccHHHHHHHHHHHHHHHhhhhcCCCCCeEEEEeCCCCCc-cHHHHHHhChhhhhccCCCceE-EEEe
Confidence 3458999999999888876553 2 28999999875 2 33333332211 11222 2222
Q ss_pred ecCCCCcCcC-CCCCcEEEEcCCcCCC
Q 026274 127 TWGFLDASIF-DLNPNIILGADVFYDA 152 (241)
Q Consensus 127 ~w~~~~~~~~-~~~fDlIl~~dvly~~ 152 (241)
--+.+...++ +.+.|+++++-.+++.
T Consensus 94 vpgSFy~rLfP~~Svh~~~Ss~alHWL 120 (334)
T PF03492_consen 94 VPGSFYGRLFPSNSVHFGHSSYALHWL 120 (334)
T ss_dssp EES-TTS--S-TT-EEEEEEES-TTB-
T ss_pred cCchhhhccCCCCceEEEEEechhhhc
Confidence 2233333333 3478888877777663
|
Caffeine is synthesized through sequential three-step methylation of xanthine derivatives at positions 7-N, 3-N, and 1-N. The protein 7-methylxanthine methyltransferase (designated as CaMXMT) catalyses the second step to produce theobromine [].; GO: 0008168 methyltransferase activity; PDB: 2EFJ_A 1M6E_X 2EG5_C 3B5I_B. |
| >PRK13699 putative methylase; Provisional | Back alignment and domain information |
|---|
Probab=83.75 E-value=10 Score=31.89 Aligned_cols=65 Identities=11% Similarity=0.080 Sum_probs=38.0
Q ss_pred CcCCCCCcEEEEcCCcCC---------------CccHHHHHHHHHHHhhcCCCeEEEEEeeccCchhHHHHHHHHcCCEE
Q 026274 134 SIFDLNPNIILGADVFYD---------------ASAFDDLFATITYLLQSSPGSVFITTYHNRSGHHLIEFLMVKWGLKC 198 (241)
Q Consensus 134 ~~~~~~fDlIl~~dvly~---------------~~~~~~ll~~~~~lL~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~ 198 (241)
.+.++++|+|+..++... .+.....++.+.++|++ |+.+++-...+.... +...+++.||.+
T Consensus 15 ~lpd~SVDLIiTDPPY~i~~~~~~~~~~~~~~~~ew~~~~l~E~~RVLKp--gg~l~if~~~~~~~~-~~~al~~~GF~l 91 (227)
T PRK13699 15 RFPDNAVDFILTDPPYLVGFRDRQGRTIAGDKTDEWLQPACNEMYRVLKK--DALMVSFYGWNRVDR-FMAAWKNAGFSV 91 (227)
T ss_pred hCCccccceEEeCCCcccccccCCCcccccccHHHHHHHHHHHHHHHcCC--CCEEEEEeccccHHH-HHHHHHHCCCEE
Confidence 445678899987665531 02245778889999984 454443222222222 233457889987
Q ss_pred EEE
Q 026274 199 VKL 201 (241)
Q Consensus 199 ~~i 201 (241)
...
T Consensus 92 ~~~ 94 (227)
T PRK13699 92 VGH 94 (227)
T ss_pred eeE
Confidence 653
|
|
| >PRK08265 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=83.58 E-value=16 Score=30.65 Aligned_cols=76 Identities=12% Similarity=0.058 Sum_probs=44.4
Q ss_pred CCCCeEEEecCCCCH---HHHHHHHhCCEEEEEcCCCcHHHHHHHHHHHHHcCCceEEEEeecCCCCc--CcC------C
Q 026274 69 FSGANVVELGAGTSL---PGLVAAKVGSNVTLTDDSNRIEVLKNMRRVCEMNKLNCRVMGLTWGFLDA--SIF------D 137 (241)
Q Consensus 69 ~~~~~VLElGcGtGl---~sl~la~~g~~V~~tD~~~~~~~l~~~~~n~~~n~~~~~~~~l~w~~~~~--~~~------~ 137 (241)
.+++++|=.|++.|+ +...+++.|++|+++|.++ +-++.+.+.. +..+.+...|..+... ... -
T Consensus 4 ~~~k~vlItGas~gIG~~ia~~l~~~G~~V~~~~r~~--~~~~~~~~~~---~~~~~~~~~Dl~~~~~~~~~~~~~~~~~ 78 (261)
T PRK08265 4 LAGKVAIVTGGATLIGAAVARALVAAGARVAIVDIDA--DNGAAVAASL---GERARFIATDITDDAAIERAVATVVARF 78 (261)
T ss_pred CCCCEEEEECCCChHHHHHHHHHHHCCCEEEEEeCCH--HHHHHHHHHh---CCeeEEEEecCCCHHHHHHHHHHHHHHh
Confidence 467889999976552 3334555699999999985 2333322211 3345666777765431 000 1
Q ss_pred CCCcEEEEcCCc
Q 026274 138 LNPNIILGADVF 149 (241)
Q Consensus 138 ~~fDlIl~~dvl 149 (241)
.+.|+++.+--.
T Consensus 79 g~id~lv~~ag~ 90 (261)
T PRK08265 79 GRVDILVNLACT 90 (261)
T ss_pred CCCCEEEECCCC
Confidence 367988866443
|
|
| >PF06962 rRNA_methylase: Putative rRNA methylase; InterPro: IPR010719 This family contains a number of putative rRNA methylases | Back alignment and domain information |
|---|
Probab=83.30 E-value=12 Score=29.24 Aligned_cols=85 Identities=18% Similarity=0.145 Sum_probs=43.3
Q ss_pred EEEEEcCCCcHHHHHHHHHHHHHcCCc--eEEEEeecCCCCcCcCC-CCCcEEEEcC---------CcCCCccHHHHHHH
Q 026274 94 NVTLTDDSNRIEVLKNMRRVCEMNKLN--CRVMGLTWGFLDASIFD-LNPNIILGAD---------VFYDASAFDDLFAT 161 (241)
Q Consensus 94 ~V~~tD~~~~~~~l~~~~~n~~~n~~~--~~~~~l~w~~~~~~~~~-~~fDlIl~~d---------vly~~~~~~~ll~~ 161 (241)
+|.+.|+-+ +++++.++..+.++.. +++..-.-... ....+ .++|+++.+= ++=.++.--..++.
T Consensus 1 kVyaFDIQ~--~Ai~~T~~rL~~~~~~~~v~li~~sHe~l-~~~i~~~~v~~~iFNLGYLPggDk~i~T~~~TTl~Al~~ 77 (140)
T PF06962_consen 1 KVYAFDIQE--EAIENTRERLEEAGLEDRVTLILDSHENL-DEYIPEGPVDAAIFNLGYLPGGDKSITTKPETTLKALEA 77 (140)
T ss_dssp EEEEEES-H--HHHHHHHHHHHHTT-GSGEEEEES-GGGG-GGT--S--EEEEEEEESB-CTS-TTSB--HHHHHHHHHH
T ss_pred CEEEEECHH--HHHHHHHHHHHhcCCCCcEEEEECCHHHH-HhhCccCCcCEEEEECCcCCCCCCCCCcCcHHHHHHHHH
Confidence 689999995 7999999999888763 44443222222 12223 3788887431 11111233445566
Q ss_pred HHHHhhcCCCeE-EEEEeeccCc
Q 026274 162 ITYLLQSSPGSV-FITTYHNRSG 183 (241)
Q Consensus 162 ~~~lL~~~~~~~-~~~~~~~r~~ 183 (241)
+..+|+ +||+ .++.|....+
T Consensus 78 al~lL~--~gG~i~iv~Y~GH~g 98 (140)
T PF06962_consen 78 ALELLK--PGGIITIVVYPGHPG 98 (140)
T ss_dssp HHHHEE--EEEEEEEEE--STCH
T ss_pred HHHhhc--cCCEEEEEEeCCCCC
Confidence 666776 4554 5555554443
|
; PDB: 3EEY_H 3LBY_A 3MTI_A. |
| >COG3392 Adenine-specific DNA methylase [DNA replication, recombination, and repair] | Back alignment and domain information |
|---|
Probab=82.89 E-value=1.5 Score=37.79 Aligned_cols=49 Identities=20% Similarity=0.283 Sum_probs=40.3
Q ss_pred cHHHHHHHHHhc-----cCCCCCCeEEEecCCCCHHHHHHHHhCCEEEEEcCCC
Q 026274 54 CSVILAEYVWQQ-----RYRFSGANVVELGAGTSLPGLVAAKVGSNVTLTDDSN 102 (241)
Q Consensus 54 ~s~~L~~~l~~~-----~~~~~~~~VLElGcGtGl~sl~la~~g~~V~~tD~~~ 102 (241)
+-..|..|+... .+..+|+.+.||=+|||++|-.+.+.|..|++-|+..
T Consensus 6 sK~~LlsFi~~~i~~~~k~~~s~k~f~DiFaGtGVV~~~fkk~~n~iiaNDle~ 59 (330)
T COG3392 6 SKYKLLSFIKENIHEVKKEDLSGKIFCDIFAGTGVVGRFFKKAGNKIIANDLEY 59 (330)
T ss_pred hHHHHHHHHHHHHHHHhhcccCCCeeeeeccCccHHHHHHHHhcchhhhchHHH
Confidence 345677787754 2456788999999999999999999999999999864
|
|
| >PRK05872 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=82.89 E-value=16 Score=31.52 Aligned_cols=79 Identities=14% Similarity=0.040 Sum_probs=46.0
Q ss_pred CCCCCeEEEecCCCCH---HHHHHHHhCCEEEEEcCCCcHHHHHHHHHHHHHcCCceEEEEeecCCCCc--CcC------
Q 026274 68 RFSGANVVELGAGTSL---PGLVAAKVGSNVTLTDDSNRIEVLKNMRRVCEMNKLNCRVMGLTWGFLDA--SIF------ 136 (241)
Q Consensus 68 ~~~~~~VLElGcGtGl---~sl~la~~g~~V~~tD~~~~~~~l~~~~~n~~~n~~~~~~~~l~w~~~~~--~~~------ 136 (241)
..+++++|=.|++.|+ ++..+++.|++|++++.++ +-++.+.+.+.. +..+.....|..+... ...
T Consensus 6 ~l~gk~vlItGas~gIG~~ia~~l~~~G~~V~~~~r~~--~~l~~~~~~l~~-~~~~~~~~~Dv~d~~~v~~~~~~~~~~ 82 (296)
T PRK05872 6 SLAGKVVVVTGAARGIGAELARRLHARGAKLALVDLEE--AELAALAAELGG-DDRVLTVVADVTDLAAMQAAAEEAVER 82 (296)
T ss_pred CCCCCEEEEECCCchHHHHHHHHHHHCCCEEEEEeCCH--HHHHHHHHHhcC-CCcEEEEEecCCCHHHHHHHHHHHHHH
Confidence 3578899999977663 3444555689999999985 344444333321 2333344466654321 000
Q ss_pred CCCCcEEEEcCCc
Q 026274 137 DLNPNIILGADVF 149 (241)
Q Consensus 137 ~~~fDlIl~~dvl 149 (241)
-.++|+++.+--+
T Consensus 83 ~g~id~vI~nAG~ 95 (296)
T PRK05872 83 FGGIDVVVANAGI 95 (296)
T ss_pred cCCCCEEEECCCc
Confidence 1368999876554
|
|
| >PRK05867 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=82.84 E-value=7 Score=32.62 Aligned_cols=79 Identities=13% Similarity=0.106 Sum_probs=49.4
Q ss_pred CCCCeEEEecCCCCH---HHHHHHHhCCEEEEEcCCCcHHHHHHHHHHHHHcCCceEEEEeecCCCCc--CcC------C
Q 026274 69 FSGANVVELGAGTSL---PGLVAAKVGSNVTLTDDSNRIEVLKNMRRVCEMNKLNCRVMGLTWGFLDA--SIF------D 137 (241)
Q Consensus 69 ~~~~~VLElGcGtGl---~sl~la~~g~~V~~tD~~~~~~~l~~~~~n~~~n~~~~~~~~l~w~~~~~--~~~------~ 137 (241)
.+++++|=.|++.|+ ++..+++.|++|++++.++ +.++.+...+...+.++.+...|..+... ... -
T Consensus 7 ~~~k~vlVtGas~gIG~~ia~~l~~~G~~V~~~~r~~--~~~~~~~~~l~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~ 84 (253)
T PRK05867 7 LHGKRALITGASTGIGKRVALAYVEAGAQVAIAARHL--DALEKLADEIGTSGGKVVPVCCDVSQHQQVTSMLDQVTAEL 84 (253)
T ss_pred CCCCEEEEECCCchHHHHHHHHHHHCCCEEEEEcCCH--HHHHHHHHHHHhcCCeEEEEEccCCCHHHHHHHHHHHHHHh
Confidence 468899999987663 3344555689999999985 45555555555445555566666654321 000 1
Q ss_pred CCCcEEEEcCCc
Q 026274 138 LNPNIILGADVF 149 (241)
Q Consensus 138 ~~fDlIl~~dvl 149 (241)
.+.|+++.+--+
T Consensus 85 g~id~lv~~ag~ 96 (253)
T PRK05867 85 GGIDIAVCNAGI 96 (253)
T ss_pred CCCCEEEECCCC
Confidence 368998876544
|
|
| >PRK05650 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=82.49 E-value=16 Score=30.83 Aligned_cols=75 Identities=15% Similarity=0.017 Sum_probs=43.1
Q ss_pred eEEEecCCCCH---HHHHHHHhCCEEEEEcCCCcHHHHHHHHHHHHHcCCceEEEEeecCCCCc--CcC------CCCCc
Q 026274 73 NVVELGAGTSL---PGLVAAKVGSNVTLTDDSNRIEVLKNMRRVCEMNKLNCRVMGLTWGFLDA--SIF------DLNPN 141 (241)
Q Consensus 73 ~VLElGcGtGl---~sl~la~~g~~V~~tD~~~~~~~l~~~~~n~~~n~~~~~~~~l~w~~~~~--~~~------~~~fD 141 (241)
+||=.|+..|+ ++..+++.|++|++++.+. +-++.+...+...+.++.+...|+.+... ... -.++|
T Consensus 2 ~vlVtGasggIG~~la~~l~~~g~~V~~~~r~~--~~~~~~~~~l~~~~~~~~~~~~D~~~~~~~~~~~~~i~~~~~~id 79 (270)
T PRK05650 2 RVMITGAASGLGRAIALRWAREGWRLALADVNE--EGGEETLKLLREAGGDGFYQRCDVRDYSQLTALAQACEEKWGGID 79 (270)
T ss_pred EEEEecCCChHHHHHHHHHHHCCCEEEEEeCCH--HHHHHHHHHHHhcCCceEEEEccCCCHHHHHHHHHHHHHHcCCCC
Confidence 57777765543 2333445588999999885 34444444444445566666777765321 001 13688
Q ss_pred EEEEcCCc
Q 026274 142 IILGADVF 149 (241)
Q Consensus 142 lIl~~dvl 149 (241)
+++.+--+
T Consensus 80 ~lI~~ag~ 87 (270)
T PRK05650 80 VIVNNAGV 87 (270)
T ss_pred EEEECCCC
Confidence 88866443
|
|
| >PRK07454 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=82.46 E-value=25 Score=28.89 Aligned_cols=78 Identities=17% Similarity=0.164 Sum_probs=46.0
Q ss_pred CCCeEEEecCCCCHHHHHHH----HhCCEEEEEcCCCcHHHHHHHHHHHHHcCCceEEEEeecCCCCc--CcC------C
Q 026274 70 SGANVVELGAGTSLPGLVAA----KVGSNVTLTDDSNRIEVLKNMRRVCEMNKLNCRVMGLTWGFLDA--SIF------D 137 (241)
Q Consensus 70 ~~~~VLElGcGtGl~sl~la----~~g~~V~~tD~~~~~~~l~~~~~n~~~n~~~~~~~~l~w~~~~~--~~~------~ 137 (241)
+.+++|=.|+ +|.+|..++ +.|++|++++.++ +-.+.+...+...+.++.+...|..+... ... -
T Consensus 5 ~~k~vlItG~-sg~iG~~la~~l~~~G~~V~~~~r~~--~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~ 81 (241)
T PRK07454 5 SMPRALITGA-SSGIGKATALAFAKAGWDLALVARSQ--DALEALAAELRSTGVKAAAYSIDLSNPEAIAPGIAELLEQF 81 (241)
T ss_pred CCCEEEEeCC-CchHHHHHHHHHHHCCCEEEEEeCCH--HHHHHHHHHHHhCCCcEEEEEccCCCHHHHHHHHHHHHHHc
Confidence 3567888885 455555544 4588999999985 33444444344334456666677665421 001 1
Q ss_pred CCCcEEEEcCCcC
Q 026274 138 LNPNIILGADVFY 150 (241)
Q Consensus 138 ~~fDlIl~~dvly 150 (241)
.+.|+++.+.-..
T Consensus 82 ~~id~lv~~ag~~ 94 (241)
T PRK07454 82 GCPDVLINNAGMA 94 (241)
T ss_pred CCCCEEEECCCcc
Confidence 3589998766543
|
|
| >PF02086 MethyltransfD12: D12 class N6 adenine-specific DNA methyltransferase; InterPro: IPR012327 In prokaryotes, the major role of DNA methylation is to protect host DNA against degradation by restriction enzymes | Back alignment and domain information |
|---|
Probab=82.34 E-value=1.9 Score=36.42 Aligned_cols=45 Identities=22% Similarity=0.132 Sum_probs=30.3
Q ss_pred HHHHHHhccCCCCCCeEEEecCCCCHHHHHHHHhCCEEEEEcCCC
Q 026274 58 LAEYVWQQRYRFSGANVVELGAGTSLPGLVAAKVGSNVTLTDDSN 102 (241)
Q Consensus 58 L~~~l~~~~~~~~~~~VLElGcGtGl~sl~la~~g~~V~~tD~~~ 102 (241)
|+.+|..........+++|.=||+|.+++.+.+.+..|++-|+++
T Consensus 8 l~~~I~~~ip~~~~~~~vepF~G~g~V~~~~~~~~~~vi~ND~~~ 52 (260)
T PF02086_consen 8 LAKWIIELIPKNKHKTYVEPFAGGGSVFLNLKQPGKRVIINDINP 52 (260)
T ss_dssp GHHHHHHHS-S-S-SEEEETT-TTSHHHHCC---SSEEEEEES-H
T ss_pred HHHHHHHHcCCCCCCEEEEEecchhHHHHHhcccccceeeeechH
Confidence 556666543322678999999999999999988888999999995
|
There are 2 major classes of DNA methyltransferase that differ in the nature of the modifications they effect. The members of one class (C-MTases) methylate a ring carbon and form C5-methylcytosine (see IPR001525 from INTERPRO). Members of the second class (N-MTases) methylate exocyclic nitrogens and form either N4-methylcytosine (N4-MTases) or N6-methyladenine (N6-MTases). Both classes of MTase utilise the cofactor S-adenosyl-L-methionine (SAM) as the methyl donor and are active as monomeric enzymes []. N-6 adenine-specific DNA methylases (2.1.1.72 from EC) (A-Mtase) are enzymes that specifically methylate the amino group at the C-6 position of adenines in DNA. Such enzymes are found in the three existing types of bacterial restriction-modification systems (in type I system the A-Mtase is the product of the hsdM gene, and in type III it is the product of the mod gene). All of these enzymes recognise a specific sequence in DNA and methylate an adenine in that sequence. It has been shown [, , , ] that A-Mtases contain a conserved motif Asp/Asn-Pro-Pro-Tyr/Phe in their N-terminal section, this conserved region could be involved in substrate binding or in the catalytic activity. The structure of N6-MTase TaqI (M.TaqI) has been resolved to 2.4 A []. The molecule folds into 2 domains, an N-terminal catalytic domain, which contains the catalytic and cofactor binding sites, and comprises a central 9-stranded beta-sheet, surrounded by 5 helices; and a C-terminal DNA recognition domain, which is formed by 4 small beta-sheets and 8 alpha-helices. The N- and C-terminal domains form a cleft that accommodates the DNA substrate. A classification of N-MTases has been proposed, based on conserved motif (CM) arrangements []. According to this classification, N6-MTases that have a DPPY motif (CM II) occuring after the FxGxG motif (CM I) are designated D12 class N6-adenine MTases.; GO: 0009007 site-specific DNA-methyltransferase (adenine-specific) activity, 0032775 DNA methylation on adenine; PDB: 1Q0T_B 1YFJ_B 1Q0S_A 1YFL_B 1YF3_B 2DPM_A 2ORE_F 2G1P_B. |
| >PF10354 DUF2431: Domain of unknown function (DUF2431); InterPro: IPR019446 This entry represents the N-terminal domain of a family of proteins whose function is not known | Back alignment and domain information |
|---|
Probab=82.24 E-value=24 Score=28.18 Aligned_cols=121 Identities=20% Similarity=0.181 Sum_probs=72.9
Q ss_pred cCCCCHHHHHHHHh-C--CEEEEEcCCCcHHHHH---HHHHHHHH---cCCceEEEEeecCCCCcCc--CCCCCcEEEEc
Q 026274 78 GAGTSLPGLVAAKV-G--SNVTLTDDSNRIEVLK---NMRRVCEM---NKLNCRVMGLTWGFLDASI--FDLNPNIILGA 146 (241)
Q Consensus 78 GcGtGl~sl~la~~-g--~~V~~tD~~~~~~~l~---~~~~n~~~---n~~~~~~~~l~w~~~~~~~--~~~~fDlIl~~ 146 (241)
|=|-=-.|+.+++. + .++++|-++...++++ .+..|++. .+..+ ....|..+..... ...+||.|+-+
T Consensus 4 GeGdfSFs~sL~~~~~~~~~l~ATs~ds~~~l~~kY~~~~~nl~~L~~~g~~V-~~~VDat~l~~~~~~~~~~FDrIiFN 82 (166)
T PF10354_consen 4 GEGDFSFSLSLARAFGSATNLVATSYDSEEELLQKYPDAEENLEELRELGVTV-LHGVDATKLHKHFRLKNQRFDRIIFN 82 (166)
T ss_pred eccchHHHHHHHHHcCCCCeEEEeecCchHHHHHhcccHHHHHHHHhhcCCcc-ccCCCCCcccccccccCCcCCEEEEe
Confidence 44444566777765 3 3899999987433443 23344432 23322 1234443333222 34589999855
Q ss_pred CCcCC-------------CccHHHHHHHHHHHhhcCCCeEEEEEeeccCc--hhHHHHHHHHcCCEEEEE
Q 026274 147 DVFYD-------------ASAFDDLFATITYLLQSSPGSVFITTYHNRSG--HHLIEFLMVKWGLKCVKL 201 (241)
Q Consensus 147 dvly~-------------~~~~~~ll~~~~~lL~~~~~~~~~~~~~~r~~--~~~~~~~~~~~g~~~~~i 201 (241)
-+--- ...+..+++....+|+ ++|.|.++.....+ ...+..++++.||.+...
T Consensus 83 FPH~G~~~~~~~~~i~~nr~Ll~~Ff~Sa~~~L~--~~G~IhVTl~~~~py~~W~i~~lA~~~gl~l~~~ 150 (166)
T PF10354_consen 83 FPHVGGGSEDGKRNIRLNRELLRGFFKSASQLLK--PDGEIHVTLKDGQPYDSWNIEELAAEAGLVLVRK 150 (166)
T ss_pred CCCCCCCccchhHHHHHHHHHHHHHHHHHHHhcC--CCCEEEEEeCCCCCCccccHHHHHHhcCCEEEEE
Confidence 33222 2357778888899987 56777777655533 456778889999999876
|
|
| >PRK09291 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=82.09 E-value=8.9 Score=31.88 Aligned_cols=75 Identities=19% Similarity=0.171 Sum_probs=46.4
Q ss_pred CCeEEEecCCCCHHHHHH----HHhCCEEEEEcCCCcHHHHHHHHHHHHHcCCceEEEEeecCCCCc--CcCCCCCcEEE
Q 026274 71 GANVVELGAGTSLPGLVA----AKVGSNVTLTDDSNRIEVLKNMRRVCEMNKLNCRVMGLTWGFLDA--SIFDLNPNIIL 144 (241)
Q Consensus 71 ~~~VLElGcGtGl~sl~l----a~~g~~V~~tD~~~~~~~l~~~~~n~~~n~~~~~~~~l~w~~~~~--~~~~~~fDlIl 144 (241)
++++|=.|++.| +|..+ ++.|++|++++.++ .-++.++......+..+.+...|+.+... .....+.|+++
T Consensus 2 ~~~vlVtGasg~-iG~~ia~~l~~~G~~v~~~~r~~--~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~id~vi 78 (257)
T PRK09291 2 SKTILITGAGSG-FGREVALRLARKGHNVIAGVQIA--PQVTALRAEAARRGLALRVEKLDLTDAIDRAQAAEWDVDVLL 78 (257)
T ss_pred CCEEEEeCCCCH-HHHHHHHHHHHCCCEEEEEeCCH--HHHHHHHHHHHhcCCcceEEEeeCCCHHHHHHHhcCCCCEEE
Confidence 357888888655 34443 44588999999875 34444444444445567777888876432 11223789888
Q ss_pred EcCC
Q 026274 145 GADV 148 (241)
Q Consensus 145 ~~dv 148 (241)
.+--
T Consensus 79 ~~ag 82 (257)
T PRK09291 79 NNAG 82 (257)
T ss_pred ECCC
Confidence 7643
|
|
| >TIGR01202 bchC 2-desacetyl-2-hydroxyethyl bacteriochlorophyllide A dehydrogenase | Back alignment and domain information |
|---|
Probab=81.97 E-value=6.3 Score=34.28 Aligned_cols=87 Identities=15% Similarity=0.076 Sum_probs=46.7
Q ss_pred CCCCeEEEecCC-CCHHHHHHHH-hCCE-EEEEcCCCcHHHHHHHHHHHHHcCCceEEEEeecCCCCcCcCCCCCcEEEE
Q 026274 69 FSGANVVELGAG-TSLPGLVAAK-VGSN-VTLTDDSNRIEVLKNMRRVCEMNKLNCRVMGLTWGFLDASIFDLNPNIILG 145 (241)
Q Consensus 69 ~~~~~VLElGcG-tGl~sl~la~-~g~~-V~~tD~~~~~~~l~~~~~n~~~n~~~~~~~~l~w~~~~~~~~~~~fDlIl~ 145 (241)
.++.+||=+||| .|++++.+|+ .|++ |+++|.++ +-++.+... . + .+-.+ . ....+|+|+-
T Consensus 143 ~~~~~vlV~G~G~vG~~a~q~ak~~G~~~v~~~~~~~--~rl~~a~~~----~----~--i~~~~---~-~~~g~Dvvid 206 (308)
T TIGR01202 143 VKVLPDLIVGHGTLGRLLARLTKAAGGSPPAVWETNP--RRRDGATGY----E----V--LDPEK---D-PRRDYRAIYD 206 (308)
T ss_pred cCCCcEEEECCCHHHHHHHHHHHHcCCceEEEeCCCH--HHHHhhhhc----c----c--cChhh---c-cCCCCCEEEE
Confidence 356788888887 5666666665 4875 77788874 344433321 1 0 11000 0 1235777763
Q ss_pred cCCcCCCccHHHHHHHHHHHhhcCCCeEEEEEe
Q 026274 146 ADVFYDASAFDDLFATITYLLQSSPGSVFITTY 178 (241)
Q Consensus 146 ~dvly~~~~~~~ll~~~~~lL~~~~~~~~~~~~ 178 (241)
+ ..-...++...+++++ +|.+++++.
T Consensus 207 ~------~G~~~~~~~~~~~l~~-~G~iv~~G~ 232 (308)
T TIGR01202 207 A------SGDPSLIDTLVRRLAK-GGEIVLAGF 232 (308)
T ss_pred C------CCCHHHHHHHHHhhhc-CcEEEEEee
Confidence 2 2233456666677773 344455554
|
|
| >TIGR02822 adh_fam_2 zinc-binding alcohol dehydrogenase family protein | Back alignment and domain information |
|---|
Probab=81.96 E-value=29 Score=30.46 Aligned_cols=92 Identities=10% Similarity=-0.095 Sum_probs=50.5
Q ss_pred CCCCCCeEEEecCC-CCHHHHHHHH-hCCEEEEEcCCCcHHHHHHHHHHHHHcCCceEEEEeecCCCCcCcCCCCCcEEE
Q 026274 67 YRFSGANVVELGAG-TSLPGLVAAK-VGSNVTLTDDSNRIEVLKNMRRVCEMNKLNCRVMGLTWGFLDASIFDLNPNIIL 144 (241)
Q Consensus 67 ~~~~~~~VLElGcG-tGl~sl~la~-~g~~V~~tD~~~~~~~l~~~~~n~~~n~~~~~~~~l~w~~~~~~~~~~~fDlIl 144 (241)
...+|.+||=.|+| .|...+.+|+ .|++|++++.++ +-++.+++ .|....+ +-.+. ....+|+++
T Consensus 162 ~~~~g~~VlV~G~g~iG~~a~~~a~~~G~~vi~~~~~~--~~~~~a~~----~Ga~~vi---~~~~~----~~~~~d~~i 228 (329)
T TIGR02822 162 SLPPGGRLGLYGFGGSAHLTAQVALAQGATVHVMTRGA--AARRLALA----LGAASAG---GAYDT----PPEPLDAAI 228 (329)
T ss_pred CCCCCCEEEEEcCCHHHHHHHHHHHHCCCeEEEEeCCh--HHHHHHHH----hCCceec---ccccc----CcccceEEE
Confidence 34468899999975 4444455555 488999999986 33444433 3332211 10110 123578776
Q ss_pred EcCCcCCCccHHHHHHHHHHHhhcCCCeEEEEEe
Q 026274 145 GADVFYDASAFDDLFATITYLLQSSPGSVFITTY 178 (241)
Q Consensus 145 ~~dvly~~~~~~~ll~~~~~lL~~~~~~~~~~~~ 178 (241)
-.+.. ...+....+++++ +|.+++++.
T Consensus 229 ~~~~~------~~~~~~~~~~l~~-~G~~v~~G~ 255 (329)
T TIGR02822 229 LFAPA------GGLVPPALEALDR-GGVLAVAGI 255 (329)
T ss_pred ECCCc------HHHHHHHHHhhCC-CcEEEEEec
Confidence 55443 2356666677763 344555554
|
Members of this model form a distinct subset of the larger family of oxidoreductases that includes zinc-binding alcohol dehydrogenases and NADPH:quinone reductases (pfam00107). The gene neighborhood of members of this family is not conserved and it appears that no members are characterized. The sequence of the family includes 6 invariant cysteine residues and one invariant histidine. It appears that no member is characterized. |
| >cd00401 AdoHcyase S-adenosyl-L-homocysteine hydrolase (AdoHycase) catalyzes the hydrolysis of S-adenosyl-L-homocysteine (AdoHyc) to form adenosine (Ado) and homocysteine (Hcy) | Back alignment and domain information |
|---|
Probab=81.88 E-value=2.9 Score=38.55 Aligned_cols=36 Identities=19% Similarity=0.208 Sum_probs=27.9
Q ss_pred CCCCCCeEEEecCC-CCHHHHHHHH-hCCEEEEEcCCC
Q 026274 67 YRFSGANVVELGAG-TSLPGLVAAK-VGSNVTLTDDSN 102 (241)
Q Consensus 67 ~~~~~~~VLElGcG-tGl~sl~la~-~g~~V~~tD~~~ 102 (241)
....|++|+=+||| .|......++ .|++|+++|.++
T Consensus 198 ~~l~GktVvViG~G~IG~~va~~ak~~Ga~ViV~d~d~ 235 (413)
T cd00401 198 VMIAGKVAVVAGYGDVGKGCAQSLRGQGARVIVTEVDP 235 (413)
T ss_pred CCCCCCEEEEECCCHHHHHHHHHHHHCCCEEEEEECCh
Confidence 34689999999999 6755444444 589999999996
|
The equilibrium lies far on the side of AdoHyc synthesis, but in nature the removal of Ado and Hyc is sufficiently fast, so that the net reaction is in the direction of hydrolysis. Since AdoHyc is a potent inhibitor of S-adenosyl-L-methionine dependent methyltransferases, AdoHycase plays a critical role in the modulation of the activity of various methyltransferases. The enzyme forms homooligomers of 45-50kDa subunits, each binding one molecule of NAD+. |
| >PRK14027 quinate/shikimate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=81.57 E-value=24 Score=30.73 Aligned_cols=133 Identities=11% Similarity=-0.015 Sum_probs=63.1
Q ss_pred HHHHHHHhccCCCCCCeEEEecCCCCHH--HHHHHHhCC-EEEEEcCCCcHHHHHHHHHHHHHcCCceEEEEeecCCCCc
Q 026274 57 ILAEYVWQQRYRFSGANVVELGAGTSLP--GLVAAKVGS-NVTLTDDSNRIEVLKNMRRVCEMNKLNCRVMGLTWGFLDA 133 (241)
Q Consensus 57 ~L~~~l~~~~~~~~~~~VLElGcGtGl~--sl~la~~g~-~V~~tD~~~~~~~l~~~~~n~~~n~~~~~~~~l~w~~~~~ 133 (241)
-+.+-|.......++++||=||||-..- ...+++.|+ +++..+.+. +-.+.+.+.+........+...++....
T Consensus 113 Gf~~~L~~~~~~~~~k~vlilGaGGaarAi~~aL~~~g~~~i~i~nR~~--~ka~~La~~~~~~~~~~~~~~~~~~~~~- 189 (283)
T PRK14027 113 GFGRGMEEGLPNAKLDSVVQVGAGGVGNAVAYALVTHGVQKLQVADLDT--SRAQALADVINNAVGREAVVGVDARGIE- 189 (283)
T ss_pred HHHHHHHhcCcCcCCCeEEEECCcHHHHHHHHHHHHCCCCEEEEEcCCH--HHHHHHHHHHhhccCcceEEecCHhHHH-
Confidence 3444444333345688999999994433 333455676 799999885 2223332222211111111122222111
Q ss_pred CcCCCCCcEEEEcCCcCCCccH-HHHHHHHHHHhhcCCCeE-EEEEeeccCchhHHHHHHHHcCCEEEE
Q 026274 134 SIFDLNPNIILGADVFYDASAF-DDLFATITYLLQSSPGSV-FITTYHNRSGHHLIEFLMVKWGLKCVK 200 (241)
Q Consensus 134 ~~~~~~fDlIl~~dvly~~~~~-~~ll~~~~~lL~~~~~~~-~~~~~~~r~~~~~~~~~~~~~g~~~~~ 200 (241)
. ....+|+|+-+-++-..+.. .++ . . ..+. ++.+ +=+.|.++.+ .+...+++.|..+..
T Consensus 190 ~-~~~~~divINaTp~Gm~~~~~~~~-~-~-~~l~--~~~~v~D~vY~P~~T--~ll~~A~~~G~~~~~ 250 (283)
T PRK14027 190 D-VIAAADGVVNATPMGMPAHPGTAF-D-V-SCLT--KDHWVGDVVYMPIET--ELLKAARALGCETLD 250 (283)
T ss_pred H-HHhhcCEEEEcCCCCCCCCCCCCC-C-H-HHcC--CCcEEEEcccCCCCC--HHHHHHHHCCCEEEc
Confidence 0 11368999977665322111 111 1 1 2343 3332 2244555443 344556778876654
|
|
| >PRK06114 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=81.43 E-value=30 Score=28.80 Aligned_cols=80 Identities=16% Similarity=0.093 Sum_probs=47.1
Q ss_pred CCCCeEEEecCCCCHHHHHHH----HhCCEEEEEcCCCcHHHHHHHHHHHHHcCCceEEEEeecCCCCc--CcC------
Q 026274 69 FSGANVVELGAGTSLPGLVAA----KVGSNVTLTDDSNRIEVLKNMRRVCEMNKLNCRVMGLTWGFLDA--SIF------ 136 (241)
Q Consensus 69 ~~~~~VLElGcGtGl~sl~la----~~g~~V~~tD~~~~~~~l~~~~~n~~~n~~~~~~~~l~w~~~~~--~~~------ 136 (241)
.+++.+|=.|++.| +|..++ +.|++|++++.++. ..++.+.+.+...+.++.+...|..+... ...
T Consensus 6 ~~~k~~lVtG~s~g-IG~~ia~~l~~~G~~v~~~~r~~~-~~~~~~~~~l~~~~~~~~~~~~D~~~~~~i~~~~~~~~~~ 83 (254)
T PRK06114 6 LDGQVAFVTGAGSG-IGQRIAIGLAQAGADVALFDLRTD-DGLAETAEHIEAAGRRAIQIAADVTSKADLRAAVARTEAE 83 (254)
T ss_pred CCCCEEEEECCCch-HHHHHHHHHHHCCCEEEEEeCCcc-hHHHHHHHHHHhcCCceEEEEcCCCCHHHHHHHHHHHHHH
Confidence 46788998886655 444444 45889999998752 23444444444444455556666654321 000
Q ss_pred CCCCcEEEEcCCcC
Q 026274 137 DLNPNIILGADVFY 150 (241)
Q Consensus 137 ~~~fDlIl~~dvly 150 (241)
-.+.|+++.+--+.
T Consensus 84 ~g~id~li~~ag~~ 97 (254)
T PRK06114 84 LGALTLAVNAAGIA 97 (254)
T ss_pred cCCCCEEEECCCCC
Confidence 13579888776554
|
|
| >PRK12475 thiamine/molybdopterin biosynthesis MoeB-like protein; Provisional | Back alignment and domain information |
|---|
Probab=81.19 E-value=4.6 Score=36.11 Aligned_cols=36 Identities=19% Similarity=0.325 Sum_probs=28.6
Q ss_pred CCCCCCeEEEecCC-CC-HHHHHHHHhCC-EEEEEcCCC
Q 026274 67 YRFSGANVVELGAG-TS-LPGLVAAKVGS-NVTLTDDSN 102 (241)
Q Consensus 67 ~~~~~~~VLElGcG-tG-l~sl~la~~g~-~V~~tD~~~ 102 (241)
...++++||=+||| .| .++..|++.|. +++++|.+.
T Consensus 20 ~~L~~~~VlIiG~GglGs~va~~La~aGvg~i~lvD~D~ 58 (338)
T PRK12475 20 RKIREKHVLIVGAGALGAANAEALVRAGIGKLTIADRDY 58 (338)
T ss_pred HhhcCCcEEEECCCHHHHHHHHHHHHcCCCEEEEEcCCc
Confidence 34577899999999 45 56777888887 899999974
|
|
| >PRK12749 quinate/shikimate dehydrogenase; Reviewed | Back alignment and domain information |
|---|
Probab=80.86 E-value=28 Score=30.32 Aligned_cols=137 Identities=15% Similarity=0.164 Sum_probs=64.1
Q ss_pred HHHHHHhccCCCCCCeEEEecCCCCHHHHH--HHHhCC-EEEEEcCCCc-HHHHHHHHHHHHHcCCceEEEEeecCCCC-
Q 026274 58 LAEYVWQQRYRFSGANVVELGAGTSLPGLV--AAKVGS-NVTLTDDSNR-IEVLKNMRRVCEMNKLNCRVMGLTWGFLD- 132 (241)
Q Consensus 58 L~~~l~~~~~~~~~~~VLElGcGtGl~sl~--la~~g~-~V~~tD~~~~-~~~l~~~~~n~~~n~~~~~~~~l~w~~~~- 132 (241)
+.+-|.......+++++|=||||-..-++. ++..|+ +++.++.++. .+-.+.+.+.+.... ...+....|.+..
T Consensus 111 f~~~l~~~~~~~~~k~vlvlGaGGaarAi~~~l~~~g~~~i~i~nRt~~~~~ka~~la~~~~~~~-~~~~~~~~~~~~~~ 189 (288)
T PRK12749 111 HIRAIKESGFDIKGKTMVLLGAGGASTAIGAQGAIEGLKEIKLFNRRDEFFDKALAFAQRVNENT-DCVVTVTDLADQQA 189 (288)
T ss_pred HHHHHHhcCCCcCCCEEEEECCcHHHHHHHHHHHHCCCCEEEEEeCCccHHHHHHHHHHHhhhcc-CceEEEechhhhhh
Confidence 333443333345788999999994433333 455676 8999999841 012222222222111 1111223332210
Q ss_pred cCcCCCCCcEEEEcCCcCCCccH-HHHHHHHHHHhhcCCCeEEE-EEeeccCchhHHHHHHHHcCCEEEE
Q 026274 133 ASIFDLNPNIILGADVFYDASAF-DDLFATITYLLQSSPGSVFI-TTYHNRSGHHLIEFLMVKWGLKCVK 200 (241)
Q Consensus 133 ~~~~~~~fDlIl~~dvly~~~~~-~~ll~~~~~lL~~~~~~~~~-~~~~~r~~~~~~~~~~~~~g~~~~~ 200 (241)
.......+|+|+.+-++=..+.. ..+... ...++ ++.+++ +.|.+..+ .+...+++.|..+..
T Consensus 190 l~~~~~~aDivINaTp~Gm~~~~~~~~~~~-~~~l~--~~~~v~D~vY~P~~T--~ll~~A~~~G~~~~~ 254 (288)
T PRK12749 190 FAEALASADILTNGTKVGMKPLENESLVND-ISLLH--PGLLVTECVYNPHMT--KLLQQAQQAGCKTID 254 (288)
T ss_pred hhhhcccCCEEEECCCCCCCCCCCCCCCCc-HHHCC--CCCEEEEecCCCccC--HHHHHHHHCCCeEEC
Confidence 00011368999987766322211 101100 12343 344333 55555433 344455777876654
|
|
| >PRK08862 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=80.75 E-value=8.9 Score=31.84 Aligned_cols=77 Identities=18% Similarity=0.261 Sum_probs=48.9
Q ss_pred CCCCeEEEecCCCCH---HHHHHHHhCCEEEEEcCCCcHHHHHHHHHHHHHcCCceEEEEeecCCCCc--Cc-------C
Q 026274 69 FSGANVVELGAGTSL---PGLVAAKVGSNVTLTDDSNRIEVLKNMRRVCEMNKLNCRVMGLTWGFLDA--SI-------F 136 (241)
Q Consensus 69 ~~~~~VLElGcGtGl---~sl~la~~g~~V~~tD~~~~~~~l~~~~~n~~~n~~~~~~~~l~w~~~~~--~~-------~ 136 (241)
.+++++|=.|++.|+ ++..+++.|++|++++.++ +.++.+.+.+...+..+.....|..+... .. +
T Consensus 3 ~~~k~~lVtGas~GIG~aia~~la~~G~~V~~~~r~~--~~l~~~~~~i~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~ 80 (227)
T PRK08862 3 IKSSIILITSAGSVLGRTISCHFARLGATLILCDQDQ--SALKDTYEQCSALTDNVYSFQLKDFSQESIRHLFDAIEQQF 80 (227)
T ss_pred CCCeEEEEECCccHHHHHHHHHHHHCCCEEEEEcCCH--HHHHHHHHHHHhcCCCeEEEEccCCCHHHHHHHHHHHHHHh
Confidence 467899999999885 4555666799999999885 46655555455445444445555443321 00 1
Q ss_pred CCCCcEEEEcC
Q 026274 137 DLNPNIILGAD 147 (241)
Q Consensus 137 ~~~fDlIl~~d 147 (241)
..++|+++.+-
T Consensus 81 g~~iD~li~na 91 (227)
T PRK08862 81 NRAPDVLVNNW 91 (227)
T ss_pred CCCCCEEEECC
Confidence 12689888764
|
|
| >PRK07904 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=80.74 E-value=24 Score=29.61 Aligned_cols=75 Identities=15% Similarity=0.143 Sum_probs=44.4
Q ss_pred CCCeEEEecCCCCHHHHHH----HHhC-CEEEEEcCCCcHHHHHHHHHHHHHcC-CceEEEEeecCCCCc------CcC-
Q 026274 70 SGANVVELGAGTSLPGLVA----AKVG-SNVTLTDDSNRIEVLKNMRRVCEMNK-LNCRVMGLTWGFLDA------SIF- 136 (241)
Q Consensus 70 ~~~~VLElGcGtGl~sl~l----a~~g-~~V~~tD~~~~~~~l~~~~~n~~~n~-~~~~~~~l~w~~~~~------~~~- 136 (241)
.+++||=.||+.|+ |..+ ++.| ++|++++.++. ..++.+.+.+...+ .++.+..+|..+... ...
T Consensus 7 ~~~~vlItGas~gi-G~~la~~l~~~gg~~V~~~~r~~~-~~~~~~~~~l~~~~~~~v~~~~~D~~~~~~~~~~~~~~~~ 84 (253)
T PRK07904 7 NPQTILLLGGTSEI-GLAICERYLKNAPARVVLAALPDD-PRRDAAVAQMKAAGASSVEVIDFDALDTDSHPKVIDAAFA 84 (253)
T ss_pred CCcEEEEEcCCcHH-HHHHHHHHHhcCCCeEEEEeCCcc-hhHHHHHHHHHhcCCCceEEEEecCCChHHHHHHHHHHHh
Confidence 56789999997663 3333 3444 79999998863 22444444444433 356777777765431 000
Q ss_pred CCCCcEEEEc
Q 026274 137 DLNPNIILGA 146 (241)
Q Consensus 137 ~~~fDlIl~~ 146 (241)
....|+++.+
T Consensus 85 ~g~id~li~~ 94 (253)
T PRK07904 85 GGDVDVAIVA 94 (253)
T ss_pred cCCCCEEEEe
Confidence 1368977754
|
|
| >PRK11524 putative methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=80.35 E-value=3.1 Score=36.12 Aligned_cols=44 Identities=7% Similarity=0.050 Sum_probs=28.7
Q ss_pred cCCCCCcEEEEcCCcCCC----------------ccHHHHHHHHHHHhhcCCCeEEEEEeec
Q 026274 135 IFDLNPNIILGADVFYDA----------------SAFDDLFATITYLLQSSPGSVFITTYHN 180 (241)
Q Consensus 135 ~~~~~fDlIl~~dvly~~----------------~~~~~ll~~~~~lL~~~~~~~~~~~~~~ 180 (241)
..+++||+|+++.+++.. ..+..++..+.++|+ ++|.+++.+..
T Consensus 23 l~~~siDlIitDPPY~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~rvLK--~~G~i~i~~~~ 82 (284)
T PRK11524 23 IPSESVDLIFADPPYNIGKNFDGLIEAWKEDLFIDWLYEWIDECHRVLK--KQGTMYIMNST 82 (284)
T ss_pred cccCcccEEEECCCcccccccccccccccHHHHHHHHHHHHHHHHHHhC--CCcEEEEEcCc
Confidence 345689999987776421 123578899999998 55555554333
|
|
| >PF01488 Shikimate_DH: Shikimate / quinate 5-dehydrogenase; InterPro: IPR006151 This entry represents a domain found in shikimate and quinate dehydrogenases, as well as glutamyl-tRNA reductases | Back alignment and domain information |
|---|
Probab=80.23 E-value=9.6 Score=29.07 Aligned_cols=78 Identities=17% Similarity=0.227 Sum_probs=47.2
Q ss_pred CCCCCCeEEEecCC-CC-HHHHHHHHhCC-EEEEEcCCCcHHHHHHHHHHHHHcCCceEEEEeecCCCCcCcCCCCCcEE
Q 026274 67 YRFSGANVVELGAG-TS-LPGLVAAKVGS-NVTLTDDSNRIEVLKNMRRVCEMNKLNCRVMGLTWGFLDASIFDLNPNII 143 (241)
Q Consensus 67 ~~~~~~~VLElGcG-tG-l~sl~la~~g~-~V~~tD~~~~~~~l~~~~~n~~~n~~~~~~~~l~w~~~~~~~~~~~fDlI 143 (241)
..+++++||=+|+| +| .+...++..|+ +|+.+.-+. +-.+.+.+.. .+..+. ...|.+... .-..+|+|
T Consensus 8 ~~l~~~~vlviGaGg~ar~v~~~L~~~g~~~i~i~nRt~--~ra~~l~~~~--~~~~~~--~~~~~~~~~--~~~~~Div 79 (135)
T PF01488_consen 8 GDLKGKRVLVIGAGGAARAVAAALAALGAKEITIVNRTP--ERAEALAEEF--GGVNIE--AIPLEDLEE--ALQEADIV 79 (135)
T ss_dssp STGTTSEEEEESSSHHHHHHHHHHHHTTSSEEEEEESSH--HHHHHHHHHH--TGCSEE--EEEGGGHCH--HHHTESEE
T ss_pred CCcCCCEEEEECCHHHHHHHHHHHHHcCCCEEEEEECCH--HHHHHHHHHc--Cccccc--eeeHHHHHH--HHhhCCeE
Confidence 35689999999998 33 44555666787 599999984 3333333333 223333 345554321 12379999
Q ss_pred EEcCCcCCC
Q 026274 144 LGADVFYDA 152 (241)
Q Consensus 144 l~~dvly~~ 152 (241)
+.+-..-..
T Consensus 80 I~aT~~~~~ 88 (135)
T PF01488_consen 80 INATPSGMP 88 (135)
T ss_dssp EE-SSTTST
T ss_pred EEecCCCCc
Confidence 988666544
|
Shikimate 5-dehydrogenase (1.1.1.25 from EC) catalyses the conversion of shikimate to 5-dehydroshikimate [, ]. This reaction is part of the shikimate pathway which is involved in the biosynthesis of aromatic amino acids []. Quinate 5-dehydrogenase catalyses the conversion of quinate to 5-dehydroquinate. This reaction is part of the quinate pathway where quinic acid is exploited as a source of carbon in prokaryotes and microbial eukaryotes. Both the shikimate and quinate pathways share two common pathway metabolites, 3-dehydroquinate and dehydroshikimate. Glutamyl-tRNA reductase (1.2.1.70 from EC) catalyzes the first step of tetrapyrrole biosynthesis in plants, archaea and most bacteria. The dimeric enzyme has an unusual V-shaped architecture where each monomer consists of three domains linked by a long 'spinal' alpha-helix. The central catalytic domain specifically recognises the glutamate moiety of the substrate []. ; PDB: 2EV9_B 2CY0_B 1WXD_A 2D5C_A 1NVT_B 2EGG_A 3PWZ_A 3DOO_A 3DON_A 3FBT_C .... |
| >PF07279 DUF1442: Protein of unknown function (DUF1442); InterPro: IPR009902 This family consists of several hypothetical Arabidopsis thaliana proteins of around 225 residues in length | Back alignment and domain information |
|---|
Probab=80.19 E-value=34 Score=28.67 Aligned_cols=100 Identities=15% Similarity=0.170 Sum_probs=51.5
Q ss_pred CCCeEEEecCCCC----HHHHHHHHh--CCEEEEEcCCCcHHHHHHHHHHHHHcCCc--eEEEEeecCCCCcCcCC--CC
Q 026274 70 SGANVVELGAGTS----LPGLVAAKV--GSNVTLTDDSNRIEVLKNMRRVCEMNKLN--CRVMGLTWGFLDASIFD--LN 139 (241)
Q Consensus 70 ~~~~VLElGcGtG----l~sl~la~~--g~~V~~tD~~~~~~~l~~~~~n~~~n~~~--~~~~~l~w~~~~~~~~~--~~ 139 (241)
+-+.++|..|+-| .+++++|.. |.+++++-.++ +-+...++.+...+.. .+|.. ++..+.... ..
T Consensus 41 nAkliVe~~s~g~~~~ttiaLaaAAr~TgGR~vCIvp~~--~~~~~~~~~l~~~~~~~~vEfvv---g~~~e~~~~~~~~ 115 (218)
T PF07279_consen 41 NAKLIVEAWSSGGAISTTIALAAAARQTGGRHVCIVPDE--QSLSEYKKALGEAGLSDVVEFVV---GEAPEEVMPGLKG 115 (218)
T ss_pred cceEEEEEecCCCchHhHHHHHHHHHhcCCeEEEEcCCh--hhHHHHHHHHhhccccccceEEe---cCCHHHHHhhccC
Confidence 4467999977644 234444433 66788877775 3455555555544443 24332 332111111 25
Q ss_pred CcEEEEcCCcCCCccHHHHHHHHHHHhhcCCCeEEEEEeec
Q 026274 140 PNIILGADVFYDASAFDDLFATITYLLQSSPGSVFITTYHN 180 (241)
Q Consensus 140 fDlIl~~dvly~~~~~~~ll~~~~~lL~~~~~~~~~~~~~~ 180 (241)
.|+++- |+ ..+.....+.++++.++.|.+++++..
T Consensus 116 iDF~vV-Dc-----~~~d~~~~vl~~~~~~~~GaVVV~~Na 150 (218)
T PF07279_consen 116 IDFVVV-DC-----KREDFAARVLRAAKLSPRGAVVVCYNA 150 (218)
T ss_pred CCEEEE-eC-----CchhHHHHHHHHhccCCCceEEEEecc
Confidence 777763 22 233344334445555667777777654
|
The function of this family is unknown. |
Homologous Structure Templates
Structure Templates Detected by BLAST
Original result of BLAST against Protein Data Bank
No homologous structure with e-value below 0.005
Structure Templates Detected by RPS-BLAST
Original result of RPS-BLAST against PDB70 database
| ID | Alignment Graph | Length |
Definition |
E-value |
| Query | 241 | |||
| 3bzb_A | 281 | Uncharacterized protein; RED ALGA, protein structu | 1e-31 |
| >3bzb_A Uncharacterized protein; RED ALGA, protein structure initiat center for eukaryotic structural genomics, CESG, structural genomics; 2.79A {Cyanidioschyzon merolae} Length = 281 | Back alignment and structure |
|---|
Score = 116 bits (291), Expect = 1e-31
Identities = 41/203 (20%), Positives = 72/203 (35%), Gaps = 21/203 (10%)
Query: 8 KDEDEMTDKHMTTVSQHYFVDESDKPSFSIAIIENMKEE-YGLFVWPCSVILAEYVWQQR 66
+ + + + Y S+ + + + VW + LA+ + Q
Sbjct: 16 GTPPDFYRERQRSRVERYQSPAGAPLQCSVQVQTTQEHPLWTSHVWSGARALADTLCWQP 75
Query: 67 YRFSGANVVELGAGTSLPGLVAAKVG-SNVTLTDDSNRIEVLKNMRRVCEMNKLN----- 120
+G V ELGAG L +VA G V TD + E+L ++ + N
Sbjct: 76 ELIAGKTVCELGAGAGLVSIVAFLAGADQVVATDYPDP-EILNSLESNIREHTANSCSSE 134
Query: 121 ------CRVMGLTWGFLDASIFDLNP----NIILGADVFYDASAFDDLFATITYLL---Q 167
+V+ WG S+ ++L AD+ A D L ++ LL
Sbjct: 135 TVKRASPKVVPYRWGDSPDSLQRCTGLQRFQVVLLADLLSFHQAHDALLRSVKMLLALPA 194
Query: 168 SSPGSVFITTYHNRSGHHLIEFL 190
+ P +V + T+ + H L
Sbjct: 195 NDPTAVALVTFTHHRPHLAERDL 217
|
Structure Templates Detected by HHsearch
Original result of HHsearch against PDB70 database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 241 | |||
| 3bzb_A | 281 | Uncharacterized protein; RED ALGA, protein structu | 99.91 | |
| 3lpm_A | 259 | Putative methyltransferase; structural genomics, p | 99.72 | |
| 3evz_A | 230 | Methyltransferase; NYSGXRC, NEW YORK SGX research | 99.68 | |
| 3g5l_A | 253 | Putative S-adenosylmethionine dependent methyltran | 99.67 | |
| 2nxc_A | 254 | L11 mtase, ribosomal protein L11 methyltransferase | 99.66 | |
| 3jwg_A | 219 | HEN1, methyltransferase type 12; 1.90A {Clostridiu | 99.65 | |
| 3ujc_A | 266 | Phosphoethanolamine N-methyltransferase; parasite; | 99.65 | |
| 1nkv_A | 256 | Hypothetical protein YJHP; structural genomics, PS | 99.65 | |
| 3njr_A | 204 | Precorrin-6Y methylase; methyltransferase, decarbo | 99.64 | |
| 3p9n_A | 189 | Possible methyltransferase (methylase); RV2966C, a | 99.64 | |
| 3bus_A | 273 | REBM, methyltransferase; rebeccamycin synthesis; H | 99.64 | |
| 3dh0_A | 219 | SAM dependent methyltransferase; cystal structure, | 99.64 | |
| 3jwh_A | 217 | HEN1; methyltransferase; HET: SAH; 2.20A {Anabaena | 99.63 | |
| 1vl5_A | 260 | Unknown conserved protein BH2331; putative methylt | 99.63 | |
| 1xxl_A | 239 | YCGJ protein; structural genomics, protein structu | 99.63 | |
| 4htf_A | 285 | S-adenosylmethionine-dependent methyltransferase; | 99.63 | |
| 3e23_A | 211 | Uncharacterized protein RPA2492; alpha-beta protei | 99.63 | |
| 3e05_A | 204 | Precorrin-6Y C5,15-methyltransferase (decarboxyla; | 99.62 | |
| 3h2b_A | 203 | SAM-dependent methyltransferase; alpha-beta protei | 99.62 | |
| 3sm3_A | 235 | SAM-dependent methyltransferases; NESG, structural | 99.62 | |
| 1y8c_A | 246 | S-adenosylmethionine-dependent methyltransferase; | 99.62 | |
| 3f4k_A | 257 | Putative methyltransferase; structural genomics, P | 99.62 | |
| 3l8d_A | 242 | Methyltransferase; structural genomics, PSI, nysgr | 99.61 | |
| 2p7i_A | 250 | Hypothetical protein; putative methyltransferase, | 99.61 | |
| 3dlc_A | 219 | Putative S-adenosyl-L-methionine-dependent methylt | 99.61 | |
| 3hm2_A | 178 | Precorrin-6Y C5,15-methyltransferase; alpha-beta-s | 99.61 | |
| 3lcc_A | 235 | Putative methyl chloride transferase; halide methy | 99.61 | |
| 2yxd_A | 183 | Probable cobalt-precorrin-6Y C(15)-methyltransfer | 99.61 | |
| 2o57_A | 297 | Putative sarcosine dimethylglycine methyltransfera | 99.61 | |
| 3hem_A | 302 | Cyclopropane-fatty-acyl-phospholipid synthase 2; p | 99.6 | |
| 1kpg_A | 287 | CFA synthase;, cyclopropane-fatty-acyl-phospholipi | 99.6 | |
| 3vc1_A | 312 | Geranyl diphosphate 2-C-methyltransferase; rossman | 99.6 | |
| 3mgg_A | 276 | Methyltransferase; NYSGXRC, PSI-II, protein struct | 99.6 | |
| 2xvm_A | 199 | Tellurite resistance protein TEHB; antibiotic resi | 99.6 | |
| 3grz_A | 205 | L11 mtase, ribosomal protein L11 methyltransferase | 99.59 | |
| 3kkz_A | 267 | Uncharacterized protein Q5LES9; putative methyltra | 99.59 | |
| 2ex4_A | 241 | Adrenal gland protein AD-003; methyltransferase, s | 99.59 | |
| 4hc4_A | 376 | Protein arginine N-methyltransferase 6; HRMT1L6, S | 99.58 | |
| 3ofk_A | 216 | Nodulation protein S; NODS, N-methyltransferase, S | 99.58 | |
| 3hnr_A | 220 | Probable methyltransferase BT9727_4108; structural | 99.58 | |
| 1dus_A | 194 | MJ0882; hypothetical protein, methanococcus jannas | 99.58 | |
| 1pjz_A | 203 | Thiopurine S-methyltransferase; polymorphism, S-ad | 99.57 | |
| 3gu3_A | 284 | Methyltransferase; alpha-beta protein, structural | 99.57 | |
| 3dtn_A | 234 | Putative methyltransferase MM_2633; structural gen | 99.57 | |
| 3ou2_A | 218 | SAM-dependent methyltransferase; O-methyltransfera | 99.57 | |
| 3bkw_A | 243 | MLL3908 protein, S-adenosylmethionine dependent me | 99.57 | |
| 3dli_A | 240 | Methyltransferase; PSI-II, NYSGXRC, structural gen | 99.57 | |
| 3cgg_A | 195 | SAM-dependent methyltransferase; NP_600671.1, meth | 99.57 | |
| 1yzh_A | 214 | TRNA (guanine-N(7)-)-methyltransferase; alpha-beta | 99.57 | |
| 4dzr_A | 215 | Protein-(glutamine-N5) methyltransferase, release | 99.57 | |
| 3dmg_A | 381 | Probable ribosomal RNA small subunit methyltransf; | 99.56 | |
| 2ozv_A | 260 | Hypothetical protein ATU0636; structural genomics, | 99.56 | |
| 1xtp_A | 254 | LMAJ004091AAA; SGPP, structural genomics, PSI, pro | 99.56 | |
| 3m70_A | 286 | Tellurite resistance protein TEHB homolog; structu | 99.55 | |
| 2ift_A | 201 | Putative methylase HI0767; NESG, Y767_haein, struc | 99.55 | |
| 1l3i_A | 192 | Precorrin-6Y methyltransferase/putative decarboxyl | 99.55 | |
| 1ve3_A | 227 | Hypothetical protein PH0226; dimer, riken structur | 99.55 | |
| 2gb4_A | 252 | Thiopurine S-methyltransferase; 18204406, thiopuri | 99.54 | |
| 2fk8_A | 318 | Methoxy mycolic acid synthase 4; S-adenosylmethion | 99.54 | |
| 2kw5_A | 202 | SLR1183 protein; structural genomics, northeast st | 99.54 | |
| 2p8j_A | 209 | S-adenosylmethionine-dependent methyltransferase; | 99.54 | |
| 4fsd_A | 383 | Arsenic methyltransferase; rossmann fold; 1.75A {C | 99.54 | |
| 2yqz_A | 263 | Hypothetical protein TTHA0223; RNA methyltransfera | 99.53 | |
| 2i62_A | 265 | Nicotinamide N-methyltransferase; structural genom | 99.53 | |
| 2a14_A | 263 | Indolethylamine N-methyltransferase; SGC,INMT, str | 99.53 | |
| 3pfg_A | 263 | N-methyltransferase; N,N-dimethyltransferase, SAM | 99.53 | |
| 1wy7_A | 207 | Hypothetical protein PH1948; seven-stranded beta s | 99.53 | |
| 3q87_B | 170 | N6 adenine specific DNA methylase; SAM-methyltrans | 99.52 | |
| 3i9f_A | 170 | Putative type 11 methyltransferase; structural gen | 99.52 | |
| 3e8s_A | 227 | Putative SAM dependent methyltransferase; NP_74470 | 99.52 | |
| 3d2l_A | 243 | SAM-dependent methyltransferase; ZP_00538691.1, st | 99.52 | |
| 3g89_A | 249 | Ribosomal RNA small subunit methyltransferase G; 1 | 99.52 | |
| 3iv6_A | 261 | Putative Zn-dependent alcohol dehydrogenase; alpha | 99.52 | |
| 2fca_A | 213 | TRNA (guanine-N(7)-)-methyltransferase; 2.10A {Bac | 99.52 | |
| 3g2m_A | 299 | PCZA361.24; SAM-dependent methyltransferase, glyco | 99.51 | |
| 3ccf_A | 279 | Cyclopropane-fatty-acyl-phospholipid synthase; YP_ | 99.51 | |
| 1xdz_A | 240 | Methyltransferase GIDB; MCSG, protein structure in | 99.51 | |
| 1ws6_A | 171 | Methyltransferase; structural genomics, riken stru | 99.51 | |
| 3orh_A | 236 | Guanidinoacetate N-methyltransferase; structura ge | 99.51 | |
| 3thr_A | 293 | Glycine N-methyltransferase; GNMT, folate, methylt | 99.51 | |
| 2fhp_A | 187 | Methylase, putative; alpha-beta-alpha sandwich, st | 99.5 | |
| 2b3t_A | 276 | Protein methyltransferase HEMK; translation termin | 99.5 | |
| 3bkx_A | 275 | SAM-dependent methyltransferase; YP_807781.1, cycl | 99.5 | |
| 3g07_A | 292 | 7SK snRNA methylphosphate capping enzyme; structur | 99.5 | |
| 3mti_A | 185 | RRNA methylase; SAM-dependent, PSI, MCSG, structur | 99.5 | |
| 2fpo_A | 202 | Methylase YHHF; structural genomics, putative meth | 99.5 | |
| 4gek_A | 261 | TRNA (CMO5U34)-methyltransferase; structural genom | 99.5 | |
| 3ege_A | 261 | Putative methyltransferase from antibiotic biosyn | 99.5 | |
| 3cc8_A | 230 | Putative methyltransferase; structural genomics, j | 99.5 | |
| 2p35_A | 259 | Trans-aconitate 2-methyltransferase; SAM dependent | 99.5 | |
| 4hg2_A | 257 | Methyltransferase type 11; structural genomics, PS | 99.49 | |
| 1zx0_A | 236 | Guanidinoacetate N-methyltransferase; structural g | 99.49 | |
| 1uwv_A | 433 | 23S rRNA (uracil-5-)-methyltransferase RUMA; RNA m | 99.48 | |
| 3q7e_A | 349 | Protein arginine N-methyltransferase 1; HET: SAH; | 99.48 | |
| 1ri5_A | 298 | MRNA capping enzyme; methyltransferase, M7G, messe | 99.48 | |
| 2frn_A | 278 | Hypothetical protein PH0793; structural genomics, | 99.48 | |
| 3ocj_A | 305 | Putative exported protein; structural genomics, PS | 99.48 | |
| 3g5t_A | 299 | Trans-aconitate 3-methyltransferase; structural ge | 99.47 | |
| 2fyt_A | 340 | Protein arginine N-methyltransferase 3; structural | 99.47 | |
| 2jjq_A | 425 | Uncharacterized RNA methyltransferase pyrab10780; | 99.47 | |
| 3r0q_C | 376 | Probable protein arginine N-methyltransferase 4.2; | 99.47 | |
| 2igt_A | 332 | SAM dependent methyltransferase; alpha-beta sandwi | 99.47 | |
| 1wzn_A | 252 | SAM-dependent methyltransferase; structural genomi | 99.46 | |
| 2esr_A | 177 | Methyltransferase; structural genomics, hypothetic | 99.46 | |
| 3m33_A | 226 | Uncharacterized protein; structural genomics, PSI- | 99.46 | |
| 3ggd_A | 245 | SAM-dependent methyltransferase; YP_325210.1, stru | 99.46 | |
| 1jsx_A | 207 | Glucose-inhibited division protein B; methyltransf | 99.45 | |
| 2g72_A | 289 | Phenylethanolamine N-methyltransferase; HET: SAM F | 99.45 | |
| 1yb2_A | 275 | Hypothetical protein TA0852; structural genomics, | 99.45 | |
| 4dcm_A | 375 | Ribosomal RNA large subunit methyltransferase G; 2 | 99.45 | |
| 3bxo_A | 239 | N,N-dimethyltransferase; desosamine, sugar, carboh | 99.45 | |
| 1vlm_A | 219 | SAM-dependent methyltransferase; possible histamin | 99.45 | |
| 3dxy_A | 218 | TRNA (guanine-N(7)-)-methyltransferase; rossmann f | 99.43 | |
| 1fbn_A | 230 | MJ fibrillarin homologue; MJ proteins, ribosomal R | 99.43 | |
| 1o54_A | 277 | SAM-dependent O-methyltransferase; TM0748, structu | 99.43 | |
| 3lbf_A | 210 | Protein-L-isoaspartate O-methyltransferase; modifi | 99.43 | |
| 3mb5_A | 255 | SAM-dependent methyltransferase; RNA methyltransfe | 99.43 | |
| 2gs9_A | 211 | Hypothetical protein TT1324; methyl transferase, s | 99.42 | |
| 3u81_A | 221 | Catechol O-methyltransferase; neurotransmitter deg | 99.41 | |
| 2pwy_A | 258 | TRNA (adenine-N(1)-)-methyltransferase; mtase, ado | 99.4 | |
| 3fzg_A | 200 | 16S rRNA methylase; methyltransferase, plasmid, tr | 99.4 | |
| 3bt7_A | 369 | TRNA (uracil-5-)-methyltransferase; methyluridine, | 99.4 | |
| 1g6q_1 | 328 | HnRNP arginine N-methyltransferase; SAM-binding do | 99.4 | |
| 3kr9_A | 225 | SAM-dependent methyltransferase; class I rossmann- | 99.4 | |
| 2vdw_A | 302 | Vaccinia virus capping enzyme D1 subunit; nucleoti | 99.39 | |
| 2h00_A | 254 | Methyltransferase 10 domain containing protein; st | 99.39 | |
| 4azs_A | 569 | Methyltransferase WBDD; kinase; HET: AMP SAM; 2.15 | 99.39 | |
| 4df3_A | 233 | Fibrillarin-like rRNA/TRNA 2'-O-methyltransferase; | 99.39 | |
| 3a27_A | 272 | TYW2, uncharacterized protein MJ1557; wybutosine m | 99.38 | |
| 2pxx_A | 215 | Uncharacterized protein MGC2408; structural genomi | 99.38 | |
| 2aot_A | 292 | HMT, histamine N-methyltransferase; classic methyl | 99.38 | |
| 2avn_A | 260 | Ubiquinone/menaquinone biosynthesis methyltransfe | 99.38 | |
| 2ipx_A | 233 | RRNA 2'-O-methyltransferase fibrillarin; FBL, stru | 99.38 | |
| 1ne2_A | 200 | Hypothetical protein TA1320; structural genomics, | 99.38 | |
| 3lec_A | 230 | NADB-rossmann superfamily protein; PSI, MCSG, stru | 99.37 | |
| 1vbf_A | 231 | 231AA long hypothetical protein-L-isoaspartate O- | 99.37 | |
| 1nv8_A | 284 | HEMK protein; class I adoMet-dependent methyltrans | 99.37 | |
| 4e2x_A | 416 | TCAB9; kijanose, tetronitrose, tetradeoxy sugar, s | 99.37 | |
| 2b78_A | 385 | Hypothetical protein SMU.776; structure genomics, | 99.36 | |
| 2pjd_A | 343 | Ribosomal RNA small subunit methyltransferase C; g | 99.36 | |
| 3eey_A | 197 | Putative rRNA methylase; rRNA methylation, S-adeno | 99.36 | |
| 3c0k_A | 396 | UPF0064 protein YCCW; PUA domain, adoMet dependent | 99.36 | |
| 3dr5_A | 221 | Putative O-methyltransferase; Q8NRD3, CGL1119, PF0 | 99.35 | |
| 3gdh_A | 241 | Trimethylguanosine synthase homolog; M7G, CAP, dim | 99.35 | |
| 3htx_A | 950 | HEN1; HEN1, small RNA methyltransferase, protein-R | 99.35 | |
| 3duw_A | 223 | OMT, O-methyltransferase, putative; alternating of | 99.35 | |
| 4dmg_A | 393 | Putative uncharacterized protein TTHA1493; rRNA, m | 99.35 | |
| 3gnl_A | 244 | Uncharacterized protein, DUF633, LMOF2365_1472; st | 99.35 | |
| 2y1w_A | 348 | Histone-arginine methyltransferase CARM1; histone | 99.34 | |
| 1ej0_A | 180 | FTSJ; methyltransferase, adoMet, adenosyl methioni | 99.33 | |
| 2r3s_A | 335 | Uncharacterized protein; methyltransferase domain, | 99.33 | |
| 2yvl_A | 248 | TRMI protein, hypothetical protein; tRNA, methyltr | 99.33 | |
| 1o9g_A | 250 | RRNA methyltransferase; antibiotic resistance, Se- | 99.32 | |
| 1nt2_A | 210 | Fibrillarin-like PRE-rRNA processing protein; adeM | 99.32 | |
| 2qm3_A | 373 | Predicted methyltransferase; putative methyltransf | 99.32 | |
| 3tfw_A | 248 | Putative O-methyltransferase; PSI-biology, nysgrc, | 99.32 | |
| 1g8a_A | 227 | Fibrillarin-like PRE-rRNA processing protein; rRNA | 99.32 | |
| 3tma_A | 354 | Methyltransferase; thump domain; 2.05A {Thermus th | 99.32 | |
| 3bgv_A | 313 | MRNA CAP guanine-N7 methyltransferase; alternative | 99.31 | |
| 3ntv_A | 232 | MW1564 protein; rossmann fold, putative methyltran | 99.31 | |
| 3tm4_A | 373 | TRNA (guanine N2-)-methyltransferase TRM14; rossma | 99.31 | |
| 3v97_A | 703 | Ribosomal RNA large subunit methyltransferase L; Y | 99.31 | |
| 3gwz_A | 369 | MMCR; methyltransferase, mitomycin, S-adenosyl met | 99.31 | |
| 2zfu_A | 215 | Nucleomethylin, cerebral protein 1; nucleolar prot | 99.3 | |
| 1i9g_A | 280 | Hypothetical protein RV2118C; mtase, adoMet, cryst | 99.3 | |
| 3tr6_A | 225 | O-methyltransferase; cellular processes; HET: SAH; | 99.3 | |
| 3fpf_A | 298 | Mtnas, putative uncharacterized protein; thermonic | 99.3 | |
| 1qzz_A | 374 | RDMB, aclacinomycin-10-hydroxylase; anthracycline, | 99.3 | |
| 3id6_C | 232 | Fibrillarin-like rRNA/TRNA 2'-O-methyltransferase; | 99.3 | |
| 2yxe_A | 215 | Protein-L-isoaspartate O-methyltransferase; rossma | 99.29 | |
| 1x19_A | 359 | CRTF-related protein; methyltransferase, bacterioc | 99.29 | |
| 3k6r_A | 278 | Putative transferase PH0793; structural genomics, | 99.28 | |
| 1ixk_A | 315 | Methyltransferase; open beta sheet; 1.90A {Pyrococ | 99.28 | |
| 3i53_A | 332 | O-methyltransferase; CO-complex, rossmann-like fol | 99.27 | |
| 1dl5_A | 317 | Protein-L-isoaspartate O-methyltransferase; isoasp | 99.27 | |
| 3opn_A | 232 | Putative hemolysin; structural genomics, PSI-2, pr | 99.27 | |
| 1wxx_A | 382 | TT1595, hypothetical protein TTHA1280; thermus the | 99.27 | |
| 1sui_A | 247 | Caffeoyl-COA O-methyltransferase; rossmann fold, p | 99.27 | |
| 1tw3_A | 360 | COMT, carminomycin 4-O-methyltransferase; anthracy | 99.26 | |
| 2yx1_A | 336 | Hypothetical protein MJ0883; methyl transferase, t | 99.25 | |
| 2as0_A | 396 | Hypothetical protein PH1915; RNA methyltransferase | 99.25 | |
| 2avd_A | 229 | Catechol-O-methyltransferase; structural genomics, | 99.25 | |
| 3b3j_A | 480 | Histone-arginine methyltransferase CARM1; protein | 99.24 | |
| 2gpy_A | 233 | O-methyltransferase; structural genomics, PSI, pro | 99.24 | |
| 2plw_A | 201 | Ribosomal RNA methyltransferase, putative; malaria | 99.24 | |
| 1jg1_A | 235 | PIMT;, protein-L-isoaspartate O-methyltransferase; | 99.24 | |
| 3hp7_A | 291 | Hemolysin, putative; structural genomics, APC64019 | 99.24 | |
| 2vdv_E | 246 | TRNA (guanine-N(7)-)-methyltransferase; S-adenosyl | 99.23 | |
| 2ip2_A | 334 | Probable phenazine-specific methyltransferase; pyo | 99.23 | |
| 2hnk_A | 239 | SAM-dependent O-methyltransferase; modified rossma | 99.23 | |
| 3mcz_A | 352 | O-methyltransferase; adomet_mtases, S-adenosylmeth | 99.23 | |
| 3dp7_A | 363 | SAM-dependent methyltransferase; structural genomi | 99.23 | |
| 3c3p_A | 210 | Methyltransferase; NP_951602.1, structural genomic | 99.22 | |
| 3dou_A | 191 | Ribosomal RNA large subunit methyltransferase J; c | 99.21 | |
| 3mq2_A | 218 | 16S rRNA methyltransferase; methyltranferase, ribo | 99.21 | |
| 3bwc_A | 304 | Spermidine synthase; SAM, SGPP, structura genomics | 99.21 | |
| 2b25_A | 336 | Hypothetical protein; structural genomics, methyl | 99.21 | |
| 3c3y_A | 237 | Pfomt, O-methyltransferase; plant secondary metabo | 99.2 | |
| 1af7_A | 274 | Chemotaxis receptor methyltransferase CHER; chemot | 99.2 | |
| 3ckk_A | 235 | TRNA (guanine-N(7)-)-methyltransferase; mettl1, S- | 99.2 | |
| 3r3h_A | 242 | O-methyltransferase, SAM-dependent; structural gen | 99.19 | |
| 2pbf_A | 227 | Protein-L-isoaspartate O-methyltransferase beta-A | 99.17 | |
| 1u2z_A | 433 | Histone-lysine N-methyltransferase, H3 lysine-79 s | 99.16 | |
| 3cbg_A | 232 | O-methyltransferase; cyanobacterium; HET: SAH FER | 99.16 | |
| 2qe6_A | 274 | Uncharacterized protein TFU_2867; putative methylt | 99.16 | |
| 3p2e_A | 225 | 16S rRNA methylase; methyltransferase, transferase | 99.16 | |
| 1i1n_A | 226 | Protein-L-isoaspartate O-methyltransferase; S-aden | 99.15 | |
| 3uwp_A | 438 | Histone-lysine N-methyltransferase, H3 lysine-79; | 99.14 | |
| 2nyu_A | 196 | Putative ribosomal RNA methyltransferase 2; SAM, s | 99.14 | |
| 2bm8_A | 236 | Cephalosporin hydroxylase CMCI; cephamycin biosynt | 99.14 | |
| 3ajd_A | 274 | Putative methyltransferase MJ0026; tRNA, M5C, ross | 99.13 | |
| 3m6w_A | 464 | RRNA methylase; rRNA methyltransferase, 5-methylcy | 99.12 | |
| 1r18_A | 227 | Protein-L-isoaspartate(D-aspartate)-O-methyltrans; | 99.11 | |
| 3adn_A | 294 | Spermidine synthase; aminopropyltransferase, polya | 99.11 | |
| 3m4x_A | 456 | NOL1/NOP2/SUN family protein; mtase domain, PUA do | 99.09 | |
| 2yxl_A | 450 | PH0851 protein, 450AA long hypothetical FMU protei | 99.09 | |
| 1xj5_A | 334 | Spermidine synthase 1; structural genomics, protei | 99.09 | |
| 2f8l_A | 344 | Hypothetical protein LMO1582; structural genomics, | 99.08 | |
| 2dul_A | 378 | N(2),N(2)-dimethylguanosine tRNA methyltransferas; | 99.07 | |
| 3lst_A | 348 | CALO1 methyltransferase; calicheamicin, enediyne, | 99.06 | |
| 1p91_A | 269 | Ribosomal RNA large subunit methyltransferase A; R | 99.05 | |
| 1sqg_A | 429 | SUN protein, FMU protein; rossmann-fold, mixed bet | 99.04 | |
| 3frh_A | 253 | 16S rRNA methylase; methyltransferase domain, heli | 99.03 | |
| 3lcv_B | 281 | Sisomicin-gentamicin resistance methylase SGM; ant | 99.02 | |
| 3gjy_A | 317 | Spermidine synthase; APC62791, structural genomics | 99.02 | |
| 2oxt_A | 265 | Nucleoside-2'-O-methyltransferase; flavivirus, vir | 99.02 | |
| 2h1r_A | 299 | Dimethyladenosine transferase, putative; SGC toron | 99.02 | |
| 3axs_A | 392 | Probable N(2),N(2)-dimethylguanosine tRNA methylt | 99.01 | |
| 2wa2_A | 276 | Non-structural protein 5; transferase, S-adenosyl- | 99.01 | |
| 1iy9_A | 275 | Spermidine synthase; rossmann fold, structural gen | 99.0 | |
| 3ldu_A | 385 | Putative methylase; structural genomics, PSI-2, pr | 99.0 | |
| 3ll7_A | 410 | Putative methyltransferase; methytransferase, stru | 98.99 | |
| 1fp1_D | 372 | Isoliquiritigenin 2'-O-methyltransferase; protein- | 98.98 | |
| 2i7c_A | 283 | Spermidine synthase; transferase, structural genom | 98.98 | |
| 1fp2_A | 352 | Isoflavone O-methyltransferase; protein-product co | 98.98 | |
| 1mjf_A | 281 | Spermidine synthase; spermidine synthetase, struct | 98.97 | |
| 3reo_A | 368 | (ISO)eugenol O-methyltransferase; directed evoluti | 98.97 | |
| 2r6z_A | 258 | UPF0341 protein in RSP 3' region; alpha-beta prote | 98.96 | |
| 3gru_A | 295 | Dimethyladenosine transferase; rossman fold, ribos | 98.96 | |
| 2frx_A | 479 | Hypothetical protein YEBU; rossmann-type S-adenosy | 98.96 | |
| 4a6d_A | 353 | Hydroxyindole O-methyltransferase; melatonin, circ | 98.95 | |
| 3k0b_A | 393 | Predicted N6-adenine-specific DNA methylase; methy | 98.95 | |
| 2pt6_A | 321 | Spermidine synthase; transferase, structural genom | 98.95 | |
| 1inl_A | 296 | Spermidine synthase; beta-barrel, rossman fold, st | 98.94 | |
| 2ih2_A | 421 | Modification methylase TAQI; DNA, DNA methyltransf | 98.93 | |
| 1zq9_A | 285 | Probable dimethyladenosine transferase; SGC, struc | 98.93 | |
| 2o07_A | 304 | Spermidine synthase; structural genomics, structur | 98.93 | |
| 2b2c_A | 314 | Spermidine synthase; beta-alpha, transferase; 2.50 | 98.93 | |
| 2okc_A | 445 | Type I restriction enzyme stysji M protein; NP_813 | 98.91 | |
| 1uir_A | 314 | Polyamine aminopropyltransferase; spermidien synth | 98.91 | |
| 3tqs_A | 255 | Ribosomal RNA small subunit methyltransferase A; p | 98.91 | |
| 3ldg_A | 384 | Putative uncharacterized protein SMU.472; YPSC, me | 98.9 | |
| 3p9c_A | 364 | Caffeic acid O-methyltransferase; S-adenosylmethio | 98.88 | |
| 2ld4_A | 176 | Anamorsin; methyltransferase-like fold, alpha/beta | 98.87 | |
| 1zg3_A | 358 | Isoflavanone 4'-O-methyltransferase; rossman fold, | 98.87 | |
| 3fut_A | 271 | Dimethyladenosine transferase; methyltransferase, | 98.81 | |
| 2cmg_A | 262 | Spermidine synthase; transferase, putrescine amino | 98.79 | |
| 1qam_A | 244 | ERMC' methyltransferase; rRNA methyltransferase ER | 98.77 | |
| 3ftd_A | 249 | Dimethyladenosine transferase; KSGA, rossmann-like | 98.77 | |
| 3v97_A | 703 | Ribosomal RNA large subunit methyltransferase L; Y | 98.76 | |
| 3sso_A | 419 | Methyltransferase; macrolide, natural product, ros | 98.73 | |
| 2b9e_A | 309 | NOL1/NOP2/SUN domain family, member 5 isoform 2; m | 98.73 | |
| 2xyq_A | 290 | Putative 2'-O-methyl transferase; transferase-vira | 98.71 | |
| 3giw_A | 277 | Protein of unknown function DUF574; rossmann-fold | 98.68 | |
| 2qfm_A | 364 | Spermine synthase; spermidine aminopropyltransfera | 98.67 | |
| 3uzu_A | 279 | Ribosomal RNA small subunit methyltransferase A; s | 98.66 | |
| 2p41_A | 305 | Type II methyltransferase; vizier, viral enzymes i | 98.65 | |
| 1m6y_A | 301 | S-adenosyl-methyltransferase MRAW; SAM-dependent m | 98.65 | |
| 2oyr_A | 258 | UPF0341 protein YHIQ; alpha-beta protein, structur | 98.64 | |
| 1yub_A | 245 | Ermam, rRNA methyltransferase; MLS antibiotics; NM | 98.53 | |
| 2ar0_A | 541 | M.ecoki, type I restriction enzyme ecoki M protein | 98.51 | |
| 1qyr_A | 252 | KSGA, high level kasugamycin resistance protein, S | 98.5 | |
| 4gqb_A | 637 | Protein arginine N-methyltransferase 5; TIM barrel | 98.45 | |
| 3lkd_A | 542 | Type I restriction-modification system methyltrans | 98.43 | |
| 2k4m_A | 153 | TR8_protein, UPF0146 protein MTH_1000; alpha+beta, | 98.42 | |
| 3khk_A | 544 | Type I restriction-modification system methylation | 98.36 | |
| 3cvo_A | 202 | Methyltransferase-like protein of unknown functio; | 98.32 | |
| 3s1s_A | 878 | Restriction endonuclease bpusi; PD--(D/E)XK cataly | 98.28 | |
| 2qy6_A | 257 | UPF0209 protein YFCK; structural genomics, unknown | 98.22 | |
| 3evf_A | 277 | RNA-directed RNA polymerase NS5; NS5 methyltransfe | 98.11 | |
| 3ua3_A | 745 | Protein arginine N-methyltransferase 5; TIM-barrel | 98.0 | |
| 2zig_A | 297 | TTHA0409, putative modification methylase; methylt | 97.97 | |
| 3gcz_A | 282 | Polyprotein; flavivirus, RNA capping, methyltransf | 97.88 | |
| 4auk_A | 375 | Ribosomal RNA large subunit methyltransferase M; Y | 97.87 | |
| 2oo3_A | 283 | Protein involved in catabolism of external DNA; st | 97.77 | |
| 3eld_A | 300 | Methyltransferase; flavivirus, RNA capping, guanyl | 97.72 | |
| 3b5i_A | 374 | S-adenosyl-L-methionine:salicylic acid carboxyl me | 97.53 | |
| 1g60_A | 260 | Adenine-specific methyltransferase MBOIIA; structu | 97.53 | |
| 2wk1_A | 282 | NOVP; transferase, O-methyltransferase, novobiocin | 97.51 | |
| 3o4f_A | 294 | Spermidine synthase; aminopropyltransferase, polya | 97.51 | |
| 3lkz_A | 321 | Non-structural protein 5; flavivirus, methyltransf | 97.35 | |
| 1wg8_A | 285 | Predicted S-adenosylmethionine-dependent methyltra | 97.28 | |
| 4fzv_A | 359 | Putative methyltransferase NSUN4; mterf fold, meth | 97.26 | |
| 3ufb_A | 530 | Type I restriction-modification system methyltran | 97.24 | |
| 2efj_A | 384 | 3,7-dimethylxanthine methyltransferase; SAM-depend | 97.16 | |
| 3g7u_A | 376 | Cytosine-specific methyltransferase; DNA-binding, | 96.98 | |
| 1g55_A | 343 | DNA cytosine methyltransferase DNMT2; human DNA me | 96.86 | |
| 2px2_A | 269 | Genome polyprotein [contains: capsid protein C (co | 96.79 | |
| 1m6e_X | 359 | S-adenosyl-L-methionnine:salicylic acid carboxyl m | 96.69 | |
| 3r24_A | 344 | NSP16, 2'-O-methyl transferase; methyltransferase, | 96.58 | |
| 2c7p_A | 327 | Modification methylase HHAI; DNA methyltransferase | 96.56 | |
| 2vz8_A | 2512 | Fatty acid synthase; transferase, phosphopantethei | 96.28 | |
| 3c6k_A | 381 | Spermine synthase; spermidine aminopropyltransfera | 96.26 | |
| 1i4w_A | 353 | Mitochondrial replication protein MTF1; mitochondr | 96.0 | |
| 3p8z_A | 267 | Mtase, non-structural protein 5; methyltransferase | 95.97 | |
| 3qv2_A | 327 | 5-cytosine DNA methyltransferase; DNMT2, ehmeth; H | 95.96 | |
| 3vyw_A | 308 | MNMC2; tRNA wobble uridine, modification enzyme, g | 95.72 | |
| 3ubt_Y | 331 | Modification methylase HAEIII; protein-DNA complex | 95.65 | |
| 4dcm_A | 375 | Ribosomal RNA large subunit methyltransferase G; 2 | 95.13 | |
| 2py6_A | 409 | Methyltransferase FKBM; YP_546752.1, structural ge | 94.9 | |
| 2qrv_A | 295 | DNA (cytosine-5)-methyltransferase 3A; DNA methylt | 94.56 | |
| 4h0n_A | 333 | DNMT2; SAH binding, transferase; HET: SAH; 2.71A { | 94.33 | |
| 4ej6_A | 370 | Putative zinc-binding dehydrogenase; structural ge | 93.53 | |
| 1boo_A | 323 | Protein (N-4 cytosine-specific methyltransferase P | 93.16 | |
| 1rjd_A | 334 | PPM1P, carboxy methyl transferase for protein phos | 92.97 | |
| 1eg2_A | 319 | Modification methylase RSRI; rossmann fold, exocyc | 92.9 | |
| 4hp8_A | 247 | 2-deoxy-D-gluconate 3-dehydrogenase; enzyme functi | 92.76 | |
| 1zkd_A | 387 | DUF185; NESG, RPR58, structural genomics, PSI, pro | 92.71 | |
| 4imr_A | 275 | 3-oxoacyl-(acyl-carrier-protein) reductase; oxidor | 91.63 | |
| 4iin_A | 271 | 3-ketoacyl-acyl carrier protein reductase (FABG); | 91.52 | |
| 4fn4_A | 254 | Short chain dehydrogenase; NADH-binding, rossmann | 91.45 | |
| 3s2e_A | 340 | Zinc-containing alcohol dehydrogenase superfamily; | 90.97 | |
| 3tka_A | 347 | Ribosomal RNA small subunit methyltransferase H; H | 90.55 | |
| 4f3n_A | 432 | Uncharacterized ACR, COG1565 superfamily; structur | 90.41 | |
| 1f8f_A | 371 | Benzyl alcohol dehydrogenase; rossmann fold, oxido | 90.35 | |
| 3lyl_A | 247 | 3-oxoacyl-(acyl-carrier-protein) reductase; alpha | 90.25 | |
| 2dph_A | 398 | Formaldehyde dismutase; dismutation of aldehydes, | 89.97 | |
| 3i1j_A | 247 | Oxidoreductase, short chain dehydrogenase/reducta; | 89.83 | |
| 4g81_D | 255 | Putative hexonate dehydrogenase; enzyme function i | 89.7 | |
| 2ae2_A | 260 | Protein (tropinone reductase-II); oxidoreductase, | 89.23 | |
| 2zig_A | 297 | TTHA0409, putative modification methylase; methylt | 89.05 | |
| 3l77_A | 235 | Short-chain alcohol dehydrogenase; oxidoreductase; | 88.9 | |
| 4dvj_A | 363 | Putative zinc-dependent alcohol dehydrogenase Pro; | 88.59 | |
| 3two_A | 348 | Mannitol dehydrogenase; cinnamyl-alcohol dehydroge | 88.32 | |
| 1xhl_A | 297 | Short-chain dehydrogenase/reductase family member | 88.3 | |
| 3jyo_A | 283 | Quinate/shikimate dehydrogenase; enzyme-cofactor c | 88.23 | |
| 1p0f_A | 373 | NADP-dependent alcohol dehydrogenase; ADH topology | 87.91 | |
| 3o26_A | 311 | Salutaridine reductase; short chain dehydrogenase/ | 87.58 | |
| 3ucx_A | 264 | Short chain dehydrogenase; ssgcid, seattle structu | 87.5 | |
| 3e8x_A | 236 | Putative NAD-dependent epimerase/dehydratase; stru | 87.32 | |
| 4da9_A | 280 | Short-chain dehydrogenase/reductase; structural ge | 87.11 | |
| 4fgs_A | 273 | Probable dehydrogenase protein; PSI-biology, nysgr | 86.35 | |
| 1uuf_A | 369 | YAHK, zinc-type alcohol dehydrogenase-like protein | 86.33 | |
| 1kol_A | 398 | Formaldehyde dehydrogenase; oxidoreductase; HET: N | 86.19 | |
| 1piw_A | 360 | Hypothetical zinc-type alcohol dehydrogenase- like | 86.15 | |
| 3is3_A | 270 | 17BETA-hydroxysteroid dehydrogenase; short chain d | 85.59 | |
| 3rkr_A | 262 | Short chain oxidoreductase; rossmann fold; HET: NA | 85.44 | |
| 3goh_A | 315 | Alcohol dehydrogenase, zinc-containing; NP_718042. | 85.39 | |
| 3qiv_A | 253 | Short-chain dehydrogenase or 3-oxoacyl-[acyl-CARR | 85.35 | |
| 3gaf_A | 256 | 7-alpha-hydroxysteroid dehydrogenase; seattle stru | 85.28 | |
| 1pl8_A | 356 | Human sorbitol dehydrogenase; NAD, oxidoreductase; | 85.04 | |
| 3h7a_A | 252 | Short chain dehydrogenase; oxidoreductase, PSI-2, | 84.97 | |
| 3uog_A | 363 | Alcohol dehydrogenase; structural genomics, protei | 84.95 | |
| 3ijr_A | 291 | Oxidoreductase, short chain dehydrogenase/reducta; | 84.71 | |
| 3e03_A | 274 | Short chain dehydrogenase; structural genomics, PS | 84.69 | |
| 3tjr_A | 301 | Short chain dehydrogenase; structural genomics, se | 84.53 | |
| 3tfo_A | 264 | Putative 3-oxoacyl-(acyl-carrier-protein) reducta; | 84.44 | |
| 1boo_A | 323 | Protein (N-4 cytosine-specific methyltransferase P | 84.27 | |
| 1rjw_A | 339 | ADH-HT, alcohol dehydrogenase; oxidoreductase, NAD | 84.09 | |
| 3fpc_A | 352 | NADP-dependent alcohol dehydrogenase; oxydoreducta | 83.98 | |
| 3nx4_A | 324 | Putative oxidoreductase; csgid, structural genomic | 83.97 | |
| 3gms_A | 340 | Putative NADPH:quinone reductase; structural genom | 83.92 | |
| 2h6e_A | 344 | ADH-4, D-arabinose 1-dehydrogenase; rossman fold, | 83.86 | |
| 3pwz_A | 272 | Shikimate dehydrogenase 3; alpha-beta, oxidoreduct | 83.7 | |
| 1e3i_A | 376 | Alcohol dehydrogenase, class II; HET: NAD; 2.08A { | 83.63 | |
| 3imf_A | 257 | Short chain dehydrogenase; structural genomics, in | 83.62 | |
| 3pvc_A | 689 | TRNA 5-methylaminomethyl-2-thiouridine biosynthes | 83.35 | |
| 3uko_A | 378 | Alcohol dehydrogenase class-3; alcohol dehydrogena | 83.21 | |
| 3o8q_A | 281 | Shikimate 5-dehydrogenase I alpha; structural geno | 83.16 | |
| 1pqw_A | 198 | Polyketide synthase; rossmann fold, dimer, structu | 83.08 | |
| 2jah_A | 247 | Clavulanic acid dehydrogenase; short-chain dehydro | 82.93 | |
| 1e3j_A | 352 | NADP(H)-dependent ketose reductase; oxidoreductase | 82.89 | |
| 1cdo_A | 374 | Alcohol dehydrogenase; oxidoreductase, oxidoreduct | 82.63 | |
| 1yb1_A | 272 | 17-beta-hydroxysteroid dehydrogenase type XI; shor | 82.48 | |
| 2hcy_A | 347 | Alcohol dehydrogenase 1; tetramer of asymmetric di | 82.38 | |
| 3tum_A | 269 | Shikimate dehydrogenase family protein; rossmann-f | 82.22 | |
| 1h2b_A | 359 | Alcohol dehydrogenase; oxidoreductase, archaea, hy | 82.06 | |
| 2fzw_A | 373 | Alcohol dehydrogenase class III CHI chain; S-nitro | 82.02 | |
| 4dmm_A | 269 | 3-oxoacyl-[acyl-carrier-protein] reductase; rossma | 81.84 | |
| 3ftp_A | 270 | 3-oxoacyl-[acyl-carrier protein] reductase; ssgcid | 81.78 | |
| 3v2g_A | 271 | 3-oxoacyl-[acyl-carrier-protein] reductase; struct | 81.72 | |
| 3guy_A | 230 | Short-chain dehydrogenase/reductase SDR; structura | 81.62 | |
| 3r1i_A | 276 | Short-chain type dehydrogenase/reductase; structur | 81.49 | |
| 3ioy_A | 319 | Short-chain dehydrogenase/reductase SDR; structura | 81.44 | |
| 3sju_A | 279 | Keto reductase; short-chain dehydrogenase, oxidore | 81.42 | |
| 3t7c_A | 299 | Carveol dehydrogenase; structural genomics, seattl | 81.34 | |
| 3swr_A | 1002 | DNA (cytosine-5)-methyltransferase 1; epigenetics, | 81.31 | |
| 3h8v_A | 292 | Ubiquitin-like modifier-activating enzyme 5; rossm | 81.26 | |
| 3pgx_A | 280 | Carveol dehydrogenase; structural genomics, seattl | 81.11 | |
| 3m6i_A | 363 | L-arabinitol 4-dehydrogenase; medium chain dehydro | 81.08 | |
| 1nyt_A | 271 | Shikimate 5-dehydrogenase; alpha/beta domains, WID | 81.05 | |
| 3lk7_A | 451 | UDP-N-acetylmuramoylalanine--D-glutamate ligase; a | 80.94 | |
| 2q2v_A | 255 | Beta-D-hydroxybutyrate dehydrogenase; SDR, oxidore | 80.74 | |
| 3jyn_A | 325 | Quinone oxidoreductase; rossmann fold, protein-NAD | 80.68 | |
| 3kvo_A | 346 | Hydroxysteroid dehydrogenase-like protein 2; HSDL2 | 80.57 | |
| 3r3s_A | 294 | Oxidoreductase; structural genomics, csgid, center | 80.49 | |
| 3sx2_A | 278 | Putative 3-ketoacyl-(acyl-carrier-protein) reduct; | 80.3 | |
| 1zem_A | 262 | Xylitol dehydrogenase; rossmann fold, dinucleotide | 80.26 | |
| 1jw9_B | 249 | Molybdopterin biosynthesis MOEB protein; MOEB: mod | 80.24 | |
| 4fs3_A | 256 | Enoyl-[acyl-carrier-protein] reductase [NADPH] FA; | 80.2 | |
| 3ged_A | 247 | Short-chain dehydrogenase/reductase SDR; SCOR, ros | 80.17 | |
| 1jvb_A | 347 | NAD(H)-dependent alcohol dehydrogenase; archaeon, | 80.11 | |
| 1p77_A | 272 | Shikimate 5-dehydrogenase; NADPH, oxidoreductase; | 80.11 | |
| 3v8b_A | 283 | Putative dehydrogenase, possibly 3-oxoacyl-[acyl- | 80.06 | |
| 4fc7_A | 277 | Peroxisomal 2,4-dienoyl-COA reductase; SDR/rossman | 80.05 | |
| 4egf_A | 266 | L-xylulose reductase; structural genomics, ssgcid, | 80.04 | |
| 3rku_A | 287 | Oxidoreductase YMR226C; substrate fingerprint, sho | 80.03 | |
| 3tnl_A | 315 | Shikimate dehydrogenase; structural genomics, cent | 80.02 |
| >3bzb_A Uncharacterized protein; RED ALGA, protein structure initiat center for eukaryotic structural genomics, CESG, structural genomics; 2.79A {Cyanidioschyzon merolae} | Back alignment and structure |
|---|
Probab=99.91 E-value=4e-23 Score=178.02 Aligned_cols=186 Identities=22% Similarity=0.271 Sum_probs=125.2
Q ss_pred cCCcceEEeccHHHHHHHHHhccCCCCCCeEEEecCCCCHHHHHHHHhCC-EEEEEcC-CCcHHHHHHHHHHH-----HH
Q 026274 44 KEEYGLFVWPCSVILAEYVWQQRYRFSGANVVELGAGTSLPGLVAAKVGS-NVTLTDD-SNRIEVLKNMRRVC-----EM 116 (241)
Q Consensus 44 ~~~~g~~~W~~s~~L~~~l~~~~~~~~~~~VLElGcGtGl~sl~la~~g~-~V~~tD~-~~~~~~l~~~~~n~-----~~ 116 (241)
...+|..+|+++..|++++.......++++|||||||+|.+++.+++.|+ +|+++|+ ++ ++++.+++|+ ..
T Consensus 53 ~~~~g~~~~~~~~~l~~~l~~~~~~~~~~~vLDlG~G~G~~~~~~a~~~~~~v~~~D~s~~--~~~~~a~~n~~~N~~~~ 130 (281)
T 3bzb_A 53 HPLWTSHVWSGARALADTLCWQPELIAGKTVCELGAGAGLVSIVAFLAGADQVVATDYPDP--EILNSLESNIREHTANS 130 (281)
T ss_dssp ---------CHHHHHHHHHHHCGGGTTTCEEEETTCTTSHHHHHHHHTTCSEEEEEECSCH--HHHHHHHHHHHTTCC--
T ss_pred CCCCCceeecHHHHHHHHHHhcchhcCCCeEEEecccccHHHHHHHHcCCCEEEEEeCCCH--HHHHHHHHHHHHhhhhh
Confidence 46788999999999999999887667889999999999999999999988 9999999 74 7999999999 44
Q ss_pred cCC------ceEEEEeecCCCCcCc----CCCCCcEEEEcCCcCCCccHHHHHHHHHHHhh---cCCCeEEEEEeeccCc
Q 026274 117 NKL------NCRVMGLTWGFLDASI----FDLNPNIILGADVFYDASAFDDLFATITYLLQ---SSPGSVFITTYHNRSG 183 (241)
Q Consensus 117 n~~------~~~~~~l~w~~~~~~~----~~~~fDlIl~~dvly~~~~~~~ll~~~~~lL~---~~~~~~~~~~~~~r~~ 183 (241)
++. ++.+..++|++..... .+.+||+|+++|++|+.+....+++++.++|+ ++++|.+++.+..+..
T Consensus 131 ~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~fD~Ii~~dvl~~~~~~~~ll~~l~~~Lk~~~p~~gG~l~v~~~~~~~ 210 (281)
T 3bzb_A 131 CSSETVKRASPKVVPYRWGDSPDSLQRCTGLQRFQVVLLADLLSFHQAHDALLRSVKMLLALPANDPTAVALVTFTHHRP 210 (281)
T ss_dssp --------CCCEEEECCTTSCTHHHHHHHSCSSBSEEEEESCCSCGGGHHHHHHHHHHHBCCTTTCTTCEEEEEECC---
T ss_pred cccccCCCCCeEEEEecCCCccHHHHhhccCCCCCEEEEeCcccChHHHHHHHHHHHHHhcccCCCCCCEEEEEEEeeec
Confidence 443 4778889999754333 24689999999999999999999999999998 6557766555444321
Q ss_pred -----hhHHHHHHHHcC-CEEEEEecC---CCCCCccccc-ccCCCeEEEEEEeccCC
Q 026274 184 -----HHLIEFLMVKWG-LKCVKLVDG---FSFLPHYKAR-ELNGNIQLAEIVLNHES 231 (241)
Q Consensus 184 -----~~~~~~~~~~~g-~~~~~i~~~---~~~~p~~~~~-~~~~~~~l~~i~~~~~~ 231 (241)
...+...+++.| |.+..+... ....|..... .....+.++.++++...
T Consensus 211 ~~~~~~~~~~~~l~~~G~f~v~~~~~~~~~~~~f~~~~~~~~~r~~V~~~~l~~~~~~ 268 (281)
T 3bzb_A 211 HLAERDLAFFRLVNADGALIAEPWLSPLQMDPMFPDDPGDVCIRGQVHRWRLRWRSAA 268 (281)
T ss_dssp -----CTHHHHHHHHSTTEEEEEEECCC------------------CEEEEEEEC---
T ss_pred ccchhHHHHHHHHHhcCCEEEEEeccccccccccccCCcchhccceEEEEEEEccccc
Confidence 223334567899 999988332 1222222222 34568999999877544
|
| >3lpm_A Putative methyltransferase; structural genomics, protein structure initiative, NEW YORK structural genomix research consortium, nysgxrc; 2.40A {Listeria monocytogenes} | Back alignment and structure |
|---|
Probab=99.72 E-value=5.3e-16 Score=131.50 Aligned_cols=167 Identities=13% Similarity=0.136 Sum_probs=120.0
Q ss_pred cceEEeccHHHHHHHHHhccCCC-CCCeEEEecCCCCHHHHHHHHhCC-EEEEEcCCCcHHHHHHHHHHHHHcCCc--eE
Q 026274 47 YGLFVWPCSVILAEYVWQQRYRF-SGANVVELGAGTSLPGLVAAKVGS-NVTLTDDSNRIEVLKNMRRVCEMNKLN--CR 122 (241)
Q Consensus 47 ~g~~~W~~s~~L~~~l~~~~~~~-~~~~VLElGcGtGl~sl~la~~g~-~V~~tD~~~~~~~l~~~~~n~~~n~~~--~~ 122 (241)
.|.+....+.+|+.|+. .. ++.+|||+|||+|.+++.+++.+. +|+++|+++ ++++.+++|+..++.. ++
T Consensus 29 ~~~~~~~d~~ll~~~~~----~~~~~~~vLDlG~G~G~~~~~la~~~~~~v~gvDi~~--~~~~~a~~n~~~~~~~~~v~ 102 (259)
T 3lpm_A 29 SVFSFSIDAVLLAKFSY----LPIRKGKIIDLCSGNGIIPLLLSTRTKAKIVGVEIQE--RLADMAKRSVAYNQLEDQIE 102 (259)
T ss_dssp TTBCCCHHHHHHHHHCC----CCSSCCEEEETTCTTTHHHHHHHTTCCCEEEEECCSH--HHHHHHHHHHHHTTCTTTEE
T ss_pred CCccCcHHHHHHHHHhc----CCCCCCEEEEcCCchhHHHHHHHHhcCCcEEEEECCH--HHHHHHHHHHHHCCCcccEE
Confidence 35555566888888862 23 578999999999999999999876 999999995 7999999999999874 78
Q ss_pred EEEeecCCCCcCcCCCCCcEEEEcCCcCCC--------------------ccHHHHHHHHHHHhhcCCCeEEEEEeeccC
Q 026274 123 VMGLTWGFLDASIFDLNPNIILGADVFYDA--------------------SAFDDLFATITYLLQSSPGSVFITTYHNRS 182 (241)
Q Consensus 123 ~~~l~w~~~~~~~~~~~fDlIl~~dvly~~--------------------~~~~~ll~~~~~lL~~~~~~~~~~~~~~r~ 182 (241)
+...|+.+........+||+|+++.+++.. ..++.+++.+.++|+ ++|.+++.+....
T Consensus 103 ~~~~D~~~~~~~~~~~~fD~Ii~npPy~~~~~~~~~~~~~~~~~a~~~~~~~~~~~l~~~~~~Lk--pgG~l~~~~~~~~ 180 (259)
T 3lpm_A 103 IIEYDLKKITDLIPKERADIVTCNPPYFATPDTSLKNTNEHFRIARHEVMCTLEDTIRVAASLLK--QGGKANFVHRPER 180 (259)
T ss_dssp EECSCGGGGGGTSCTTCEEEEEECCCC-----------------------HHHHHHHHHHHHHEE--EEEEEEEEECTTT
T ss_pred EEECcHHHhhhhhccCCccEEEECCCCCCCccccCCCCchHHHhhhccccCCHHHHHHHHHHHcc--CCcEEEEEEcHHH
Confidence 887777665433335689999998887765 245679999999998 6777777655444
Q ss_pred chhHHHHHHHHcCCEEEEEecCCCCCCcccccccCCCeEEEEEEec
Q 026274 183 GHHLIEFLMVKWGLKCVKLVDGFSFLPHYKARELNGNIQLAEIVLN 228 (241)
Q Consensus 183 ~~~~~~~~~~~~g~~~~~i~~~~~~~p~~~~~~~~~~~~l~~i~~~ 228 (241)
... +...++++||....+...+.. .....+..+++..+.
T Consensus 181 ~~~-~~~~l~~~~~~~~~~~~v~~~------~~~~~~~~l~~~~k~ 219 (259)
T 3lpm_A 181 LLD-IIDIMRKYRLEPKRIQFVHPR------SDREANTVLVEGIKD 219 (259)
T ss_dssp HHH-HHHHHHHTTEEEEEEEEEESS------TTSCCSEEEEEEEET
T ss_pred HHH-HHHHHHHCCCceEEEEEeecC------CCCCcEEEEEEEEeC
Confidence 333 444567889998877322221 123345666666554
|
| >3evz_A Methyltransferase; NYSGXRC, NEW YORK SGX research CE structural genomics, protein structure initiative, pyrococc furiosus, PSI-2; 2.20A {Pyrococcus furiosus} | Back alignment and structure |
|---|
Probab=99.68 E-value=3e-15 Score=123.93 Aligned_cols=128 Identities=23% Similarity=0.322 Sum_probs=98.1
Q ss_pred CCCCeEEEecCC-CCHHHHHHHHh-CCEEEEEcCCCcHHHHHHHHHHHHHcCCceEEEEeecCCCCcCcCCCCCcEEEEc
Q 026274 69 FSGANVVELGAG-TSLPGLVAAKV-GSNVTLTDDSNRIEVLKNMRRVCEMNKLNCRVMGLTWGFLDASIFDLNPNIILGA 146 (241)
Q Consensus 69 ~~~~~VLElGcG-tGl~sl~la~~-g~~V~~tD~~~~~~~l~~~~~n~~~n~~~~~~~~l~w~~~~~~~~~~~fDlIl~~ 146 (241)
.++.+|||+||| +|.+++.+++. +.+|+++|+++ ++++.+++|+..++.++++...|+... .+..+.+||+|+++
T Consensus 54 ~~~~~vLDlG~G~~G~~~~~la~~~~~~v~~vD~s~--~~~~~a~~~~~~~~~~v~~~~~d~~~~-~~~~~~~fD~I~~n 130 (230)
T 3evz_A 54 RGGEVALEIGTGHTAMMALMAEKFFNCKVTATEVDE--EFFEYARRNIERNNSNVRLVKSNGGII-KGVVEGTFDVIFSA 130 (230)
T ss_dssp CSSCEEEEECCTTTCHHHHHHHHHHCCEEEEEECCH--HHHHHHHHHHHHTTCCCEEEECSSCSS-TTTCCSCEEEEEEC
T ss_pred CCCCEEEEcCCCHHHHHHHHHHHhcCCEEEEEECCH--HHHHHHHHHHHHhCCCcEEEeCCchhh-hhcccCceeEEEEC
Confidence 467899999999 99999999998 78999999995 799999999999998888888876433 23334689999988
Q ss_pred CCcCCCcc-------------------HHHHHHHHHHHhhcCCCeEEEEEeeccC-chhHHHHHHHHcCCEEEEE
Q 026274 147 DVFYDASA-------------------FDDLFATITYLLQSSPGSVFITTYHNRS-GHHLIEFLMVKWGLKCVKL 201 (241)
Q Consensus 147 dvly~~~~-------------------~~~ll~~~~~lL~~~~~~~~~~~~~~r~-~~~~~~~~~~~~g~~~~~i 201 (241)
.+++.... ...+++.+.++|+ +||.+++....+. ....+...+++.||.+..+
T Consensus 131 pp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~Lk--pgG~l~~~~~~~~~~~~~~~~~l~~~g~~~~~~ 203 (230)
T 3evz_A 131 PPYYDKPLGRVLTEREAIGGGKYGEEFSVKLLEEAFDHLN--PGGKVALYLPDKEKLLNVIKERGIKLGYSVKDI 203 (230)
T ss_dssp CCCC---------------CCSSSCHHHHHHHHHHGGGEE--EEEEEEEEEESCHHHHHHHHHHHHHTTCEEEEE
T ss_pred CCCcCCccccccChhhhhccCccchHHHHHHHHHHHHHhC--CCeEEEEEecccHhHHHHHHHHHHHcCCceEEE
Confidence 77655332 4788999999998 6676666544432 2334455678899988776
|
| >3g5l_A Putative S-adenosylmethionine dependent methyltransferase; structural genomics, PSI-2, protein structure initiative; 2.35A {Listeria monocytogenes str} | Back alignment and structure |
|---|
Probab=99.67 E-value=5.1e-15 Score=124.29 Aligned_cols=108 Identities=20% Similarity=0.202 Sum_probs=88.6
Q ss_pred HHhccCCCCCCeEEEecCCCCHHHHHHHHhCC-EEEEEcCCCcHHHHHHHHHHHHHcCCceEEEEeecCCCCcCcCCCCC
Q 026274 62 VWQQRYRFSGANVVELGAGTSLPGLVAAKVGS-NVTLTDDSNRIEVLKNMRRVCEMNKLNCRVMGLTWGFLDASIFDLNP 140 (241)
Q Consensus 62 l~~~~~~~~~~~VLElGcGtGl~sl~la~~g~-~V~~tD~~~~~~~l~~~~~n~~~n~~~~~~~~l~w~~~~~~~~~~~f 140 (241)
+.......++.+|||+|||+|..+..+++.|. +|+++|+++ ++++.++++.. ..++.+...+..+. +..+.+|
T Consensus 36 l~~~~~~~~~~~vLD~GcG~G~~~~~l~~~~~~~v~~vD~s~--~~~~~a~~~~~--~~~~~~~~~d~~~~--~~~~~~f 109 (253)
T 3g5l_A 36 LKKMLPDFNQKTVLDLGCGFGWHCIYAAEHGAKKVLGIDLSE--RMLTEAKRKTT--SPVVCYEQKAIEDI--AIEPDAY 109 (253)
T ss_dssp HHTTCCCCTTCEEEEETCTTCHHHHHHHHTTCSEEEEEESCH--HHHHHHHHHCC--CTTEEEEECCGGGC--CCCTTCE
T ss_pred HHHhhhccCCCEEEEECCCCCHHHHHHHHcCCCEEEEEECCH--HHHHHHHHhhc--cCCeEEEEcchhhC--CCCCCCe
Confidence 33444445788999999999999999999988 999999995 69999888766 45677777777543 2335689
Q ss_pred cEEEEcCCcCCCccHHHHHHHHHHHhhcCCCeEEEEE
Q 026274 141 NIILGADVFYDASAFDDLFATITYLLQSSPGSVFITT 177 (241)
Q Consensus 141 DlIl~~dvly~~~~~~~ll~~~~~lL~~~~~~~~~~~ 177 (241)
|+|+++.++++.++...+++.+.++|+ |||.+++.
T Consensus 110 D~v~~~~~l~~~~~~~~~l~~~~~~Lk--pgG~l~~~ 144 (253)
T 3g5l_A 110 NVVLSSLALHYIASFDDICKKVYINLK--SSGSFIFS 144 (253)
T ss_dssp EEEEEESCGGGCSCHHHHHHHHHHHEE--EEEEEEEE
T ss_pred EEEEEchhhhhhhhHHHHHHHHHHHcC--CCcEEEEE
Confidence 999999999999999999999999998 66766665
|
| >2nxc_A L11 mtase, ribosomal protein L11 methyltransferase; transferase S-adenosly-L-methionine dependent methyltransfer posttranslational modification; 1.59A {Thermus thermophilus} SCOP: c.66.1.39 PDB: 1ufk_A 2nxe_A* 2nxj_A 2nxn_A 2zbp_A* 2zbq_A* 2zbr_A* 3cjq_A* 3cjr_A* 3cju_A* 3egv_A* 3cjt_A* | Back alignment and structure |
|---|
Probab=99.66 E-value=1.1e-15 Score=129.49 Aligned_cols=155 Identities=15% Similarity=0.127 Sum_probs=114.2
Q ss_pred CceEEEEeccCcCCcceEEeccHHHHHHHHHhccCCCCCCeEEEecCCCCHHHHHHHHhCCEEEEEcCCCcHHHHHHHHH
Q 026274 33 PSFSIAIIENMKEEYGLFVWPCSVILAEYVWQQRYRFSGANVVELGAGTSLPGLVAAKVGSNVTLTDDSNRIEVLKNMRR 112 (241)
Q Consensus 33 ~~~~i~i~~~~~~~~g~~~W~~s~~L~~~l~~~~~~~~~~~VLElGcGtGl~sl~la~~g~~V~~tD~~~~~~~l~~~~~ 112 (241)
..+.+.+...+. +|...++.+....+++... ..++.+|||+|||+|.+++.+++.|++|+++|+++ .+++.+++
T Consensus 87 ~~~~~~l~p~~~--fgtg~~~tt~~~~~~l~~~--~~~~~~VLDiGcG~G~l~~~la~~g~~v~gvDi~~--~~v~~a~~ 160 (254)
T 2nxc_A 87 AEIPLVIEPGMA--FGTGHHETTRLALKALARH--LRPGDKVLDLGTGSGVLAIAAEKLGGKALGVDIDP--MVLPQAEA 160 (254)
T ss_dssp SSEEEECCCC-------CCSHHHHHHHHHHHHH--CCTTCEEEEETCTTSHHHHHHHHTTCEEEEEESCG--GGHHHHHH
T ss_pred CceEEEECCCcc--ccCCCCHHHHHHHHHHHHh--cCCCCEEEEecCCCcHHHHHHHHhCCeEEEEECCH--HHHHHHHH
Confidence 345555555443 4444558888888888754 34678999999999999999999999999999997 59999999
Q ss_pred HHHHcCCceEEEEeecCCCCcCcCCCCCcEEEEcCCcCCCccHHHHHHHHHHHhhcCCCeEEEEEeeccCchhHHHHHHH
Q 026274 113 VCEMNKLNCRVMGLTWGFLDASIFDLNPNIILGADVFYDASAFDDLFATITYLLQSSPGSVFITTYHNRSGHHLIEFLMV 192 (241)
Q Consensus 113 n~~~n~~~~~~~~l~w~~~~~~~~~~~fDlIl~~dvly~~~~~~~ll~~~~~lL~~~~~~~~~~~~~~r~~~~~~~~~~~ 192 (241)
|+..|+..+++...++.+. ..+.+||+|+++.+. ..+..+++.+.++|+ |||.++++.........+...++
T Consensus 161 n~~~~~~~v~~~~~d~~~~---~~~~~fD~Vv~n~~~---~~~~~~l~~~~~~Lk--pgG~lils~~~~~~~~~v~~~l~ 232 (254)
T 2nxc_A 161 NAKRNGVRPRFLEGSLEAA---LPFGPFDLLVANLYA---ELHAALAPRYREALV--PGGRALLTGILKDRAPLVREAMA 232 (254)
T ss_dssp HHHHTTCCCEEEESCHHHH---GGGCCEEEEEEECCH---HHHHHHHHHHHHHEE--EEEEEEEEEEEGGGHHHHHHHHH
T ss_pred HHHHcCCcEEEEECChhhc---CcCCCCCEEEECCcH---HHHHHHHHHHHHHcC--CCCEEEEEeeccCCHHHHHHHHH
Confidence 9999987766666655442 224589999986433 246788999999998 67777765444444555666778
Q ss_pred HcCCEEEEE
Q 026274 193 KWGLKCVKL 201 (241)
Q Consensus 193 ~~g~~~~~i 201 (241)
+.||++..+
T Consensus 233 ~~Gf~~~~~ 241 (254)
T 2nxc_A 233 GAGFRPLEE 241 (254)
T ss_dssp HTTCEEEEE
T ss_pred HCCCEEEEE
Confidence 899999876
|
| >3jwg_A HEN1, methyltransferase type 12; 1.90A {Clostridium thermocellum} PDB: 3jwi_A | Back alignment and structure |
|---|
Probab=99.65 E-value=8.2e-15 Score=120.41 Aligned_cols=143 Identities=13% Similarity=0.072 Sum_probs=104.2
Q ss_pred ccHHHHHHHHHhccCCCCCCeEEEecCCCCHHHHHHHHhC--CEEEEEcCCCcHHHHHHHHHHHHHcCC------ceEEE
Q 026274 53 PCSVILAEYVWQQRYRFSGANVVELGAGTSLPGLVAAKVG--SNVTLTDDSNRIEVLKNMRRVCEMNKL------NCRVM 124 (241)
Q Consensus 53 ~~s~~L~~~l~~~~~~~~~~~VLElGcGtGl~sl~la~~g--~~V~~tD~~~~~~~l~~~~~n~~~n~~------~~~~~ 124 (241)
+-.....+++.......++.+|||+|||+|..+..+++.+ .+|+++|+++ .+++.+++++..++. ++++.
T Consensus 12 ~~~~~~~~~l~~~l~~~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~--~~~~~a~~~~~~~~~~~~~~~~v~~~ 89 (219)
T 3jwg_A 12 NLNQQRLGTVVAVLKSVNAKKVIDLGCGEGNLLSLLLKDKSFEQITGVDVSY--SVLERAKDRLKIDRLPEMQRKRISLF 89 (219)
T ss_dssp CHHHHHHHHHHHHHHHTTCCEEEEETCTTCHHHHHHHTSTTCCEEEEEESCH--HHHHHHHHHHTGGGSCHHHHTTEEEE
T ss_pred cchHHHHHHHHHHHhhcCCCEEEEecCCCCHHHHHHHhcCCCCEEEEEECCH--HHHHHHHHHHHhhccccccCcceEEE
Confidence 4444445555444334567899999999999999999976 5999999995 799999999887664 57777
Q ss_pred EeecCCCCcCcCCCCCcEEEEcCCcCCCccH--HHHHHHHHHHhhcCCCeEEEEEeeccC--------------------
Q 026274 125 GLTWGFLDASIFDLNPNIILGADVFYDASAF--DDLFATITYLLQSSPGSVFITTYHNRS-------------------- 182 (241)
Q Consensus 125 ~l~w~~~~~~~~~~~fDlIl~~dvly~~~~~--~~ll~~~~~lL~~~~~~~~~~~~~~r~-------------------- 182 (241)
..++... +....+||+|++++++++.+.. ..+++.+.++|+ |||+++.......
T Consensus 90 ~~d~~~~--~~~~~~fD~V~~~~~l~~~~~~~~~~~l~~~~~~Lk--pgG~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~ 165 (219)
T 3jwg_A 90 QSSLVYR--DKRFSGYDAATVIEVIEHLDENRLQAFEKVLFEFTR--PQTVIVSTPNKEYNFHYGNLFEGNLRHRDHRFE 165 (219)
T ss_dssp ECCSSSC--CGGGTTCSEEEEESCGGGCCHHHHHHHHHHHHTTTC--CSEEEEEEEBGGGGGCCCCT-----GGGCCTTS
T ss_pred eCccccc--ccccCCCCEEEEHHHHHhCCHHHHHHHHHHHHHhhC--CCEEEEEccchhhhhhhcccCcccccccCceee
Confidence 7776432 2234689999999999998744 799999999998 4566555432211
Q ss_pred -chhHHH----HHHHHcCCEEEEE
Q 026274 183 -GHHLIE----FLMVKWGLKCVKL 201 (241)
Q Consensus 183 -~~~~~~----~~~~~~g~~~~~i 201 (241)
....+. .+++++||++...
T Consensus 166 ~~~~~l~~~~~~l~~~~Gf~v~~~ 189 (219)
T 3jwg_A 166 WTRKEFQTWAVKVAEKYGYSVRFL 189 (219)
T ss_dssp BCHHHHHHHHHHHHHHHTEEEEEE
T ss_pred ecHHHHHHHHHHHHHHCCcEEEEE
Confidence 222233 5578899988776
|
| >3ujc_A Phosphoethanolamine N-methyltransferase; parasite; HET: PC; 1.19A {Plasmodium falciparum} PDB: 3uj9_A* 3uj6_A* 3uj7_A* 3uj8_A* 3uja_A 3ujb_A* 4fgz_A* 3ujd_A* | Back alignment and structure |
|---|
Probab=99.65 E-value=2.6e-15 Score=126.36 Aligned_cols=145 Identities=11% Similarity=0.039 Sum_probs=111.9
Q ss_pred EeccHHHHHHHHHhccCCCCCCeEEEecCCCCHHHHHHHHh-CCEEEEEcCCCcHHHHHHHHHHHHHcCCceEEEEeecC
Q 026274 51 VWPCSVILAEYVWQQRYRFSGANVVELGAGTSLPGLVAAKV-GSNVTLTDDSNRIEVLKNMRRVCEMNKLNCRVMGLTWG 129 (241)
Q Consensus 51 ~W~~s~~L~~~l~~~~~~~~~~~VLElGcGtGl~sl~la~~-g~~V~~tD~~~~~~~l~~~~~n~~~n~~~~~~~~l~w~ 129 (241)
.++.+..+.+.+.......++.+|||+|||+|..+..+++. +++|+++|+++ ++++.++++.... .++++...|+.
T Consensus 36 ~~~~~~~~~~~~~~~~~~~~~~~vLdiG~G~G~~~~~l~~~~~~~v~~vD~s~--~~~~~a~~~~~~~-~~~~~~~~d~~ 112 (266)
T 3ujc_A 36 ISSGGLEATKKILSDIELNENSKVLDIGSGLGGGCMYINEKYGAHTHGIDICS--NIVNMANERVSGN-NKIIFEANDIL 112 (266)
T ss_dssp CSTTHHHHHHHHTTTCCCCTTCEEEEETCTTSHHHHHHHHHHCCEEEEEESCH--HHHHHHHHTCCSC-TTEEEEECCTT
T ss_pred cccchHHHHHHHHHhcCCCCCCEEEEECCCCCHHHHHHHHHcCCEEEEEeCCH--HHHHHHHHHhhcC-CCeEEEECccc
Confidence 45666677777776666667889999999999999999997 88999999995 6999988876654 56777777776
Q ss_pred CCCcCcCCCCCcEEEEcCCcCCC--ccHHHHHHHHHHHhhcCCCeEEEEEeec-c--------------------CchhH
Q 026274 130 FLDASIFDLNPNIILGADVFYDA--SAFDDLFATITYLLQSSPGSVFITTYHN-R--------------------SGHHL 186 (241)
Q Consensus 130 ~~~~~~~~~~fDlIl~~dvly~~--~~~~~ll~~~~~lL~~~~~~~~~~~~~~-r--------------------~~~~~ 186 (241)
+. +..+++||+|++..++++. .+...+++.+.++|+ |||.+++.... . .....
T Consensus 113 ~~--~~~~~~fD~v~~~~~l~~~~~~~~~~~l~~~~~~L~--pgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 188 (266)
T 3ujc_A 113 TK--EFPENNFDLIYSRDAILALSLENKNKLFQKCYKWLK--PTGTLLITDYCATEKENWDDEFKEYVKQRKYTLITVEE 188 (266)
T ss_dssp TC--CCCTTCEEEEEEESCGGGSCHHHHHHHHHHHHHHEE--EEEEEEEEEEEESCGGGCCHHHHHHHHHHTCCCCCHHH
T ss_pred cC--CCCCCcEEEEeHHHHHHhcChHHHHHHHHHHHHHcC--CCCEEEEEEeccCCcccchHHHHHHHhcCCCCCCCHHH
Confidence 54 3345689999999999998 899999999999998 55655554321 1 12334
Q ss_pred HHHHHHHcCCEEEEEe
Q 026274 187 IEFLMVKWGLKCVKLV 202 (241)
Q Consensus 187 ~~~~~~~~g~~~~~i~ 202 (241)
...++++.||+.....
T Consensus 189 ~~~~l~~~Gf~~~~~~ 204 (266)
T 3ujc_A 189 YADILTACNFKNVVSK 204 (266)
T ss_dssp HHHHHHHTTCEEEEEE
T ss_pred HHHHHHHcCCeEEEEE
Confidence 5556788999887763
|
| >1nkv_A Hypothetical protein YJHP; structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.90A {Escherichia coli} SCOP: c.66.1.21 | Back alignment and structure |
|---|
Probab=99.65 E-value=2e-15 Score=126.70 Aligned_cols=138 Identities=13% Similarity=0.030 Sum_probs=105.6
Q ss_pred HHHHHHHhccCCCCCCeEEEecCCCCHHHHHHHHh-CCEEEEEcCCCcHHHHHHHHHHHHHcCC--ceEEEEeecCCCCc
Q 026274 57 ILAEYVWQQRYRFSGANVVELGAGTSLPGLVAAKV-GSNVTLTDDSNRIEVLKNMRRVCEMNKL--NCRVMGLTWGFLDA 133 (241)
Q Consensus 57 ~L~~~l~~~~~~~~~~~VLElGcGtGl~sl~la~~-g~~V~~tD~~~~~~~l~~~~~n~~~n~~--~~~~~~l~w~~~~~ 133 (241)
...+.+.......++.+|||+|||+|..+..+++. +.+|+++|+++ ++++.+++++..+++ ++++...++.+..
T Consensus 23 ~~~~~l~~~~~~~~~~~VLDiGcG~G~~~~~la~~~~~~v~gvD~s~--~~l~~a~~~~~~~~~~~~v~~~~~d~~~~~- 99 (256)
T 1nkv_A 23 EKYATLGRVLRMKPGTRILDLGSGSGEMLCTWARDHGITGTGIDMSS--LFTAQAKRRAEELGVSERVHFIHNDAAGYV- 99 (256)
T ss_dssp HHHHHHHHHTCCCTTCEEEEETCTTCHHHHHHHHHTCCEEEEEESCH--HHHHHHHHHHHHTTCTTTEEEEESCCTTCC-
T ss_pred HHHHHHHHhcCCCCCCEEEEECCCCCHHHHHHHHhcCCeEEEEeCCH--HHHHHHHHHHHhcCCCcceEEEECChHhCC-
Confidence 34445544444567889999999999999999986 77999999995 799999999988876 4888888776542
Q ss_pred CcCCCCCcEEEEcCCcCCCccHHHHHHHHHHHhhcCCCeEEEEEeecc---------------------CchhHHHHHHH
Q 026274 134 SIFDLNPNIILGADVFYDASAFDDLFATITYLLQSSPGSVFITTYHNR---------------------SGHHLIEFLMV 192 (241)
Q Consensus 134 ~~~~~~fDlIl~~dvly~~~~~~~ll~~~~~lL~~~~~~~~~~~~~~r---------------------~~~~~~~~~~~ 192 (241)
. +.+||+|++..++++.++...+++.+.++|+ |||.+++..... ........+++
T Consensus 100 -~-~~~fD~V~~~~~~~~~~~~~~~l~~~~r~Lk--pgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 175 (256)
T 1nkv_A 100 -A-NEKCDVAACVGATWIAGGFAGAEELLAQSLK--PGGIMLIGEPYWRQLPATEEIAQACGVSSTSDFLTLPGLVGAFD 175 (256)
T ss_dssp -C-SSCEEEEEEESCGGGTSSSHHHHHHHTTSEE--EEEEEEEEEEEETTCCSSHHHHHTTTCSCGGGSCCHHHHHHHHH
T ss_pred -c-CCCCCEEEECCChHhcCCHHHHHHHHHHHcC--CCeEEEEecCcccCCCChHHHHHHHhcccccccCCHHHHHHHHH
Confidence 2 5689999999999999999999999999999 566655542211 11133455678
Q ss_pred HcCCEEEEE
Q 026274 193 KWGLKCVKL 201 (241)
Q Consensus 193 ~~g~~~~~i 201 (241)
+.||....+
T Consensus 176 ~aGf~~~~~ 184 (256)
T 1nkv_A 176 DLGYDVVEM 184 (256)
T ss_dssp TTTBCCCEE
T ss_pred HCCCeeEEE
Confidence 899987654
|
| >3njr_A Precorrin-6Y methylase; methyltransferase, decarboxylase, transferase; HET: SAH PG4; 2.70A {Rhodobacter capsulatus} | Back alignment and structure |
|---|
Probab=99.64 E-value=1.3e-14 Score=118.96 Aligned_cols=124 Identities=14% Similarity=0.147 Sum_probs=95.6
Q ss_pred CCCCCCeEEEecCCCCHHHHHHHHhCCEEEEEcCCCcHHHHHHHHHHHHHcCCc--eEEEEeecCCCCcCcCCCCCcEEE
Q 026274 67 YRFSGANVVELGAGTSLPGLVAAKVGSNVTLTDDSNRIEVLKNMRRVCEMNKLN--CRVMGLTWGFLDASIFDLNPNIIL 144 (241)
Q Consensus 67 ~~~~~~~VLElGcGtGl~sl~la~~g~~V~~tD~~~~~~~l~~~~~n~~~n~~~--~~~~~l~w~~~~~~~~~~~fDlIl 144 (241)
...++.+|||+|||+|.+++.+++.+.+|+++|+++ ++++.+++|++.++.. +++...+..+.... ..+||+|+
T Consensus 52 ~~~~~~~vLDlGcG~G~~~~~la~~~~~v~~vD~s~--~~~~~a~~~~~~~g~~~~v~~~~~d~~~~~~~--~~~~D~v~ 127 (204)
T 3njr_A 52 APRRGELLWDIGGGSGSVSVEWCLAGGRAITIEPRA--DRIENIQKNIDTYGLSPRMRAVQGTAPAALAD--LPLPEAVF 127 (204)
T ss_dssp CCCTTCEEEEETCTTCHHHHHHHHTTCEEEEEESCH--HHHHHHHHHHHHTTCTTTEEEEESCTTGGGTT--SCCCSEEE
T ss_pred CCCCCCEEEEecCCCCHHHHHHHHcCCEEEEEeCCH--HHHHHHHHHHHHcCCCCCEEEEeCchhhhccc--CCCCCEEE
Confidence 445678999999999999999999988999999995 7999999999988875 77777665542211 24799999
Q ss_pred EcCCcCCCccHHHHHHHHHHHhhcCCCeEEEEEeeccCchhHHHHHHHHcCCEEEEE
Q 026274 145 GADVFYDASAFDDLFATITYLLQSSPGSVFITTYHNRSGHHLIEFLMVKWGLKCVKL 201 (241)
Q Consensus 145 ~~dvly~~~~~~~ll~~~~~lL~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~i 201 (241)
+...+ ..+ +++.+.++|+ |||.+++..............+++.|+++..+
T Consensus 128 ~~~~~----~~~-~l~~~~~~Lk--pgG~lv~~~~~~~~~~~~~~~l~~~g~~i~~i 177 (204)
T 3njr_A 128 IGGGG----SQA-LYDRLWEWLA--PGTRIVANAVTLESETLLTQLHARHGGQLLRI 177 (204)
T ss_dssp ECSCC----CHH-HHHHHHHHSC--TTCEEEEEECSHHHHHHHHHHHHHHCSEEEEE
T ss_pred ECCcc----cHH-HHHHHHHhcC--CCcEEEEEecCcccHHHHHHHHHhCCCcEEEE
Confidence 87644 455 9999999998 66777766554444444455677889988876
|
| >3p9n_A Possible methyltransferase (methylase); RV2966C, adoMet binding, RNA methylase, RSMD, SAM-fold, RNA methyltransferase; 1.90A {Mycobacterium tuberculosis} | Back alignment and structure |
|---|
Probab=99.64 E-value=8.8e-16 Score=123.79 Aligned_cols=129 Identities=16% Similarity=0.184 Sum_probs=96.4
Q ss_pred EeccHHHHHHHHHhccC---CCCCCeEEEecCCCCHHHHHHHHhCC-EEEEEcCCCcHHHHHHHHHHHHHcCC-ceEEEE
Q 026274 51 VWPCSVILAEYVWQQRY---RFSGANVVELGAGTSLPGLVAAKVGS-NVTLTDDSNRIEVLKNMRRVCEMNKL-NCRVMG 125 (241)
Q Consensus 51 ~W~~s~~L~~~l~~~~~---~~~~~~VLElGcGtGl~sl~la~~g~-~V~~tD~~~~~~~l~~~~~n~~~n~~-~~~~~~ 125 (241)
.++.+..+.+.+..... ..++.+|||+|||+|.+++.+++.++ +|+++|+++ ++++.+++|+..++. ++++..
T Consensus 22 ~rp~~~~~~~~l~~~l~~~~~~~~~~vLDlgcG~G~~~~~~~~~~~~~v~~vD~~~--~~~~~a~~~~~~~~~~~v~~~~ 99 (189)
T 3p9n_A 22 TRPTTDRVRESLFNIVTARRDLTGLAVLDLYAGSGALGLEALSRGAASVLFVESDQ--RSAAVIARNIEALGLSGATLRR 99 (189)
T ss_dssp C---CHHHHHHHHHHHHHHSCCTTCEEEEETCTTCHHHHHHHHTTCSEEEEEECCH--HHHHHHHHHHHHHTCSCEEEEE
T ss_pred CccCcHHHHHHHHHHHHhccCCCCCEEEEeCCCcCHHHHHHHHCCCCeEEEEECCH--HHHHHHHHHHHHcCCCceEEEE
Confidence 34555555555543221 25788999999999999998888876 899999995 799999999999886 677887
Q ss_pred eecCCCCcCcCCCCCcEEEEcCCcCCC-ccHHHHHHHHHH--HhhcCCCeEEEEEeeccCc
Q 026274 126 LTWGFLDASIFDLNPNIILGADVFYDA-SAFDDLFATITY--LLQSSPGSVFITTYHNRSG 183 (241)
Q Consensus 126 l~w~~~~~~~~~~~fDlIl~~dvly~~-~~~~~ll~~~~~--lL~~~~~~~~~~~~~~r~~ 183 (241)
.|+.+......+.+||+|+++.++++. +....+++.+.+ +|+ |||.+++.+..+..
T Consensus 100 ~d~~~~~~~~~~~~fD~i~~~~p~~~~~~~~~~~l~~~~~~~~L~--pgG~l~~~~~~~~~ 158 (189)
T 3p9n_A 100 GAVAAVVAAGTTSPVDLVLADPPYNVDSADVDAILAALGTNGWTR--EGTVAVVERATTCA 158 (189)
T ss_dssp SCHHHHHHHCCSSCCSEEEECCCTTSCHHHHHHHHHHHHHSSSCC--TTCEEEEEEETTSC
T ss_pred ccHHHHHhhccCCCccEEEECCCCCcchhhHHHHHHHHHhcCccC--CCeEEEEEecCCCC
Confidence 776654322224689999998775553 778899999999 988 77888888766543
|
| >3bus_A REBM, methyltransferase; rebeccamycin synthesis; HET: SAH; 2.65A {Lechevalieria aerocolonigenes} | Back alignment and structure |
|---|
Probab=99.64 E-value=6.6e-15 Score=124.83 Aligned_cols=144 Identities=15% Similarity=0.062 Sum_probs=109.1
Q ss_pred ccHHHHHHHHHhccCCCCCCeEEEecCCCCHHHHHHHHh-CCEEEEEcCCCcHHHHHHHHHHHHHcCC--ceEEEEeecC
Q 026274 53 PCSVILAEYVWQQRYRFSGANVVELGAGTSLPGLVAAKV-GSNVTLTDDSNRIEVLKNMRRVCEMNKL--NCRVMGLTWG 129 (241)
Q Consensus 53 ~~s~~L~~~l~~~~~~~~~~~VLElGcGtGl~sl~la~~-g~~V~~tD~~~~~~~l~~~~~n~~~n~~--~~~~~~l~w~ 129 (241)
++...+.+.+.......++.+|||+|||+|..+..+++. +.+|+++|+++ ++++.+++++..++. ++++...++.
T Consensus 44 ~~~~~~~~~l~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~~~~v~gvD~s~--~~~~~a~~~~~~~~~~~~~~~~~~d~~ 121 (273)
T 3bus_A 44 DATDRLTDEMIALLDVRSGDRVLDVGCGIGKPAVRLATARDVRVTGISISR--PQVNQANARATAAGLANRVTFSYADAM 121 (273)
T ss_dssp HHHHHHHHHHHHHSCCCTTCEEEEESCTTSHHHHHHHHHSCCEEEEEESCH--HHHHHHHHHHHHTTCTTTEEEEECCTT
T ss_pred HHHHHHHHHHHHhcCCCCCCEEEEeCCCCCHHHHHHHHhcCCEEEEEeCCH--HHHHHHHHHHHhcCCCcceEEEECccc
Confidence 345556666666555567889999999999999999885 77999999995 699999999988776 4777777776
Q ss_pred CCCcCcCCCCCcEEEEcCCcCCCccHHHHHHHHHHHhhcCCCeEEEEEe-eccC-----------------------chh
Q 026274 130 FLDASIFDLNPNIILGADVFYDASAFDDLFATITYLLQSSPGSVFITTY-HNRS-----------------------GHH 185 (241)
Q Consensus 130 ~~~~~~~~~~fDlIl~~dvly~~~~~~~ll~~~~~lL~~~~~~~~~~~~-~~r~-----------------------~~~ 185 (241)
+. +..+.+||+|++.+++++.++...+++.+.++|+ |||.+++.. ..+. +..
T Consensus 122 ~~--~~~~~~fD~v~~~~~l~~~~~~~~~l~~~~~~L~--pgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 197 (273)
T 3bus_A 122 DL--PFEDASFDAVWALESLHHMPDRGRALREMARVLR--PGGTVAIADFVLLAPVEGAKKEAVDAFRAGGGVLSLGGID 197 (273)
T ss_dssp SC--CSCTTCEEEEEEESCTTTSSCHHHHHHHHHTTEE--EEEEEEEEEEEESSCCCHHHHHHHHHHHHHHTCCCCCCHH
T ss_pred cC--CCCCCCccEEEEechhhhCCCHHHHHHHHHHHcC--CCeEEEEEEeeccCCCChhHHHHHHHHHhhcCccCCCCHH
Confidence 53 3335689999999999999999999999999998 556555442 2111 112
Q ss_pred HHHHHHHHcCCEEEEEe
Q 026274 186 LIEFLMVKWGLKCVKLV 202 (241)
Q Consensus 186 ~~~~~~~~~g~~~~~i~ 202 (241)
.+..++++.||+...+.
T Consensus 198 ~~~~~l~~aGf~~~~~~ 214 (273)
T 3bus_A 198 EYESDVRQAELVVTSTV 214 (273)
T ss_dssp HHHHHHHHTTCEEEEEE
T ss_pred HHHHHHHHcCCeEEEEE
Confidence 33445678899987763
|
| >3dh0_A SAM dependent methyltransferase; cystal structure, PSI-2, NYSGXRC, structural genomics, protein structure initiative; HET: SAM; 2.72A {Aquifex aeolicus} | Back alignment and structure |
|---|
Probab=99.64 E-value=5.5e-15 Score=121.24 Aligned_cols=129 Identities=15% Similarity=0.143 Sum_probs=103.2
Q ss_pred CCCCCeEEEecCCCCHHHHHHHHhC---CEEEEEcCCCcHHHHHHHHHHHHHcCC-ceEEEEeecCCCCcCcCCCCCcEE
Q 026274 68 RFSGANVVELGAGTSLPGLVAAKVG---SNVTLTDDSNRIEVLKNMRRVCEMNKL-NCRVMGLTWGFLDASIFDLNPNII 143 (241)
Q Consensus 68 ~~~~~~VLElGcGtGl~sl~la~~g---~~V~~tD~~~~~~~l~~~~~n~~~n~~-~~~~~~l~w~~~~~~~~~~~fDlI 143 (241)
..++.+|||+|||+|..+..+++.+ .+|+++|+++ ++++.+++++..++. ++++...++.+. +..+.+||+|
T Consensus 35 ~~~~~~vLDiG~G~G~~~~~l~~~~~~~~~v~~vD~s~--~~~~~a~~~~~~~~~~~~~~~~~d~~~~--~~~~~~fD~v 110 (219)
T 3dh0_A 35 LKEGMTVLDVGTGAGFYLPYLSKMVGEKGKVYAIDVQE--EMVNYAWEKVNKLGLKNVEVLKSEENKI--PLPDNTVDFI 110 (219)
T ss_dssp CCTTCEEEESSCTTCTTHHHHHHHHTTTCEEEEEESCH--HHHHHHHHHHHHHTCTTEEEEECBTTBC--SSCSSCEEEE
T ss_pred CCCCCEEEEEecCCCHHHHHHHHHhCCCcEEEEEECCH--HHHHHHHHHHHHcCCCcEEEEecccccC--CCCCCCeeEE
Confidence 3467899999999999999999986 6999999995 799999999988776 477777777653 2335689999
Q ss_pred EEcCCcCCCccHHHHHHHHHHHhhcCCCeEEEEEe-e-----------ccCchhHHHHHHHHcCCEEEEEe
Q 026274 144 LGADVFYDASAFDDLFATITYLLQSSPGSVFITTY-H-----------NRSGHHLIEFLMVKWGLKCVKLV 202 (241)
Q Consensus 144 l~~dvly~~~~~~~ll~~~~~lL~~~~~~~~~~~~-~-----------~r~~~~~~~~~~~~~g~~~~~i~ 202 (241)
+++.++++..+...+++.+.++|+ +||.+++.. . .+.....+..++++.||+.....
T Consensus 111 ~~~~~l~~~~~~~~~l~~~~~~Lk--pgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gf~~~~~~ 179 (219)
T 3dh0_A 111 FMAFTFHELSEPLKFLEELKRVAK--PFAYLAIIDWKKEERDKGPPPEEVYSEWEVGLILEDAGIRVGRVV 179 (219)
T ss_dssp EEESCGGGCSSHHHHHHHHHHHEE--EEEEEEEEEECSSCCSSSCCGGGSCCHHHHHHHHHHTTCEEEEEE
T ss_pred EeehhhhhcCCHHHHHHHHHHHhC--CCeEEEEEEecccccccCCchhcccCHHHHHHHHHHCCCEEEEEE
Confidence 999999999999999999999998 566655542 2 22234556677889999988763
|
| >3jwh_A HEN1; methyltransferase; HET: SAH; 2.20A {Anabaena variabilis} PDB: 3jwj_A | Back alignment and structure |
|---|
Probab=99.63 E-value=1.4e-14 Score=118.98 Aligned_cols=137 Identities=12% Similarity=0.036 Sum_probs=100.2
Q ss_pred HHHHHhccCCCCCCeEEEecCCCCHHHHHHHHhC--CEEEEEcCCCcHHHHHHHHHHHHHcCC------ceEEEEeecCC
Q 026274 59 AEYVWQQRYRFSGANVVELGAGTSLPGLVAAKVG--SNVTLTDDSNRIEVLKNMRRVCEMNKL------NCRVMGLTWGF 130 (241)
Q Consensus 59 ~~~l~~~~~~~~~~~VLElGcGtGl~sl~la~~g--~~V~~tD~~~~~~~l~~~~~n~~~n~~------~~~~~~l~w~~ 130 (241)
.+++.......++.+|||+|||+|..+..+++.+ .+|+++|+++ ++++.+++++..++. ++++...++..
T Consensus 18 ~~~l~~~l~~~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~--~~~~~a~~~~~~~~~~~~~~~~v~~~~~d~~~ 95 (217)
T 3jwh_A 18 MNGVVAALKQSNARRVIDLGCGQGNLLKILLKDSFFEQITGVDVSY--RSLEIAQERLDRLRLPRNQWERLQLIQGALTY 95 (217)
T ss_dssp HHHHHHHHHHTTCCEEEEETCTTCHHHHHHHHCTTCSEEEEEESCH--HHHHHHHHHHTTCCCCHHHHTTEEEEECCTTS
T ss_pred HHHHHHHHHhcCCCEEEEeCCCCCHHHHHHHhhCCCCEEEEEECCH--HHHHHHHHHHHHhcCCcccCcceEEEeCCccc
Confidence 3444433333467899999999999999999976 4999999995 799999999887765 47777766643
Q ss_pred CCcCcCCCCCcEEEEcCCcCCCcc--HHHHHHHHHHHhhcCCCeEEEEEeeccC---------------------chhHH
Q 026274 131 LDASIFDLNPNIILGADVFYDASA--FDDLFATITYLLQSSPGSVFITTYHNRS---------------------GHHLI 187 (241)
Q Consensus 131 ~~~~~~~~~fDlIl~~dvly~~~~--~~~ll~~~~~lL~~~~~~~~~~~~~~r~---------------------~~~~~ 187 (241)
. +....+||+|+++.++++... ...+++.+.++|+ |||++++...... ....+
T Consensus 96 ~--~~~~~~fD~v~~~~~l~~~~~~~~~~~l~~~~~~Lk--pgG~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 171 (217)
T 3jwh_A 96 Q--DKRFHGYDAATVIEVIEHLDLSRLGAFERVLFEFAQ--PKIVIVTTPNIEYNVKFANLPAGKLRHKDHRFEWTRSQF 171 (217)
T ss_dssp C--CGGGCSCSEEEEESCGGGCCHHHHHHHHHHHHTTTC--CSEEEEEEEBHHHHHHTC-----------CCSCBCHHHH
T ss_pred c--cccCCCcCEEeeHHHHHcCCHHHHHHHHHHHHHHcC--CCEEEEEccCcccchhhcccccccccccccccccCHHHH
Confidence 2 223358999999999998874 4899999999998 5566655422110 22233
Q ss_pred H----HHHHHcCCEEEEE
Q 026274 188 E----FLMVKWGLKCVKL 201 (241)
Q Consensus 188 ~----~~~~~~g~~~~~i 201 (241)
. .+++++||++...
T Consensus 172 ~~~~~~~~~~~Gf~v~~~ 189 (217)
T 3jwh_A 172 QNWANKITERFAYNVQFQ 189 (217)
T ss_dssp HHHHHHHHHHSSEEEEEC
T ss_pred HHHHHHHHHHcCceEEEE
Confidence 3 5678999988765
|
| >1vl5_A Unknown conserved protein BH2331; putative methyltransferase, structural genomics, joint cente structural genomics, JCSG; HET: MSE; 1.95A {Bacillus halodurans} SCOP: c.66.1.41 | Back alignment and structure |
|---|
Probab=99.63 E-value=9.6e-15 Score=123.19 Aligned_cols=127 Identities=13% Similarity=0.032 Sum_probs=99.3
Q ss_pred CCCCeEEEecCCCCHHHHHHHHhCCEEEEEcCCCcHHHHHHHHHHHHHcCC-ceEEEEeecCCCCcCcCCCCCcEEEEcC
Q 026274 69 FSGANVVELGAGTSLPGLVAAKVGSNVTLTDDSNRIEVLKNMRRVCEMNKL-NCRVMGLTWGFLDASIFDLNPNIILGAD 147 (241)
Q Consensus 69 ~~~~~VLElGcGtGl~sl~la~~g~~V~~tD~~~~~~~l~~~~~n~~~n~~-~~~~~~l~w~~~~~~~~~~~fDlIl~~d 147 (241)
.++.+|||+|||+|.++..+++.+.+|+++|+++ +|++.+++++..++. ++.+...|..+. +..+.+||+|+++.
T Consensus 36 ~~~~~vLDiGcG~G~~~~~l~~~~~~v~gvD~s~--~~l~~a~~~~~~~~~~~v~~~~~d~~~l--~~~~~~fD~V~~~~ 111 (260)
T 1vl5_A 36 KGNEEVLDVATGGGHVANAFAPFVKKVVAFDLTE--DILKVARAFIEGNGHQQVEYVQGDAEQM--PFTDERFHIVTCRI 111 (260)
T ss_dssp CSCCEEEEETCTTCHHHHHHGGGSSEEEEEESCH--HHHHHHHHHHHHTTCCSEEEEECCC-CC--CSCTTCEEEEEEES
T ss_pred CCCCEEEEEeCCCCHHHHHHHHhCCEEEEEeCCH--HHHHHHHHHHHhcCCCceEEEEecHHhC--CCCCCCEEEEEEhh
Confidence 4678999999999999999999988999999995 799999999887774 477777776553 33456899999999
Q ss_pred CcCCCccHHHHHHHHHHHhhcCCCeEEEEEe-ec-----------------------cCchhHHHHHHHHcCCEEEEE
Q 026274 148 VFYDASAFDDLFATITYLLQSSPGSVFITTY-HN-----------------------RSGHHLIEFLMVKWGLKCVKL 201 (241)
Q Consensus 148 vly~~~~~~~ll~~~~~lL~~~~~~~~~~~~-~~-----------------------r~~~~~~~~~~~~~g~~~~~i 201 (241)
++++.++...+++.+.++|+ |||.+++.. .. .........++++.||+...+
T Consensus 112 ~l~~~~d~~~~l~~~~r~Lk--pgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aGf~~~~~ 187 (260)
T 1vl5_A 112 AAHHFPNPASFVSEAYRVLK--KGGQLLLVDNSAPENDAFDVFYNYVEKERDYSHHRAWKKSDWLKMLEEAGFELEEL 187 (260)
T ss_dssp CGGGCSCHHHHHHHHHHHEE--EEEEEEEEEEEBCSSHHHHHHHHHHHHHHCTTCCCCCBHHHHHHHHHHHTCEEEEE
T ss_pred hhHhcCCHHHHHHHHHHHcC--CCCEEEEEEcCCCCCHHHHHHHHHHHHhcCccccCCCCHHHHHHHHHHCCCeEEEE
Confidence 99999999999999999999 566665532 11 111223445678889987765
|
| >1xxl_A YCGJ protein; structural genomics, protein structure initiative, PSI, NEW YORK SGX research center for structural genomics, nysgxrc; 2.10A {Bacillus subtilis} SCOP: c.66.1.41 PDB: 2glu_A* | Back alignment and structure |
|---|
Probab=99.63 E-value=1.3e-14 Score=121.17 Aligned_cols=118 Identities=14% Similarity=0.084 Sum_probs=96.8
Q ss_pred EEeccHHHHHHHHHhccCCCCCCeEEEecCCCCHHHHHHHHhCCEEEEEcCCCcHHHHHHHHHHHHHcCC-ceEEEEeec
Q 026274 50 FVWPCSVILAEYVWQQRYRFSGANVVELGAGTSLPGLVAAKVGSNVTLTDDSNRIEVLKNMRRVCEMNKL-NCRVMGLTW 128 (241)
Q Consensus 50 ~~W~~s~~L~~~l~~~~~~~~~~~VLElGcGtGl~sl~la~~g~~V~~tD~~~~~~~l~~~~~n~~~n~~-~~~~~~l~w 128 (241)
..||++..+.+.+. ..++.+|||+|||+|..+..+++.+.+|+++|+++ ++++.+++++..++. ++.+...++
T Consensus 5 ~~~~~~~~~~~~~~----~~~~~~vLDiGcG~G~~~~~l~~~~~~v~~vD~s~--~~~~~a~~~~~~~~~~~v~~~~~d~ 78 (239)
T 1xxl_A 5 HHHHSLGLMIKTAE----CRAEHRVLDIGAGAGHTALAFSPYVQECIGVDATK--EMVEVASSFAQEKGVENVRFQQGTA 78 (239)
T ss_dssp -CHHHHHHHHHHHT----CCTTCEEEEESCTTSHHHHHHGGGSSEEEEEESCH--HHHHHHHHHHHHHTCCSEEEEECBT
T ss_pred ccCCCcchHHHHhC----cCCCCEEEEEccCcCHHHHHHHHhCCEEEEEECCH--HHHHHHHHHHHHcCCCCeEEEeccc
Confidence 35777777777764 34678999999999999999999999999999995 799999999887775 577777777
Q ss_pred CCCCcCcCCCCCcEEEEcCCcCCCccHHHHHHHHHHHhhcCCCeEEEEE
Q 026274 129 GFLDASIFDLNPNIILGADVFYDASAFDDLFATITYLLQSSPGSVFITT 177 (241)
Q Consensus 129 ~~~~~~~~~~~fDlIl~~dvly~~~~~~~ll~~~~~lL~~~~~~~~~~~ 177 (241)
.+. +..+.+||+|+++.++++..+...+++.+.++|+ |||.+++.
T Consensus 79 ~~~--~~~~~~fD~v~~~~~l~~~~~~~~~l~~~~~~Lk--pgG~l~~~ 123 (239)
T 1xxl_A 79 ESL--PFPDDSFDIITCRYAAHHFSDVRKAVREVARVLK--QDGRFLLV 123 (239)
T ss_dssp TBC--CSCTTCEEEEEEESCGGGCSCHHHHHHHHHHHEE--EEEEEEEE
T ss_pred ccC--CCCCCcEEEEEECCchhhccCHHHHHHHHHHHcC--CCcEEEEE
Confidence 553 3345689999999999999999999999999998 56665554
|
| >4htf_A S-adenosylmethionine-dependent methyltransferase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG; HET: MSE SAM; 1.60A {Escherichia coli} | Back alignment and structure |
|---|
Probab=99.63 E-value=8.8e-15 Score=125.15 Aligned_cols=127 Identities=17% Similarity=0.226 Sum_probs=102.3
Q ss_pred CCCeEEEecCCCCHHHHHHHHhCCEEEEEcCCCcHHHHHHHHHHHHHcCC--ceEEEEeecCCCCcCcCCCCCcEEEEcC
Q 026274 70 SGANVVELGAGTSLPGLVAAKVGSNVTLTDDSNRIEVLKNMRRVCEMNKL--NCRVMGLTWGFLDASIFDLNPNIILGAD 147 (241)
Q Consensus 70 ~~~~VLElGcGtGl~sl~la~~g~~V~~tD~~~~~~~l~~~~~n~~~n~~--~~~~~~l~w~~~~~~~~~~~fDlIl~~d 147 (241)
++.+|||+|||+|..+..+++.|++|+++|+++ ++++.+++++..++. ++++...++.+.. +..+.+||+|++..
T Consensus 68 ~~~~vLDiGcG~G~~~~~l~~~~~~v~gvD~s~--~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~-~~~~~~fD~v~~~~ 144 (285)
T 4htf_A 68 QKLRVLDAGGGEGQTAIKMAERGHQVILCDLSA--QMIDRAKQAAEAKGVSDNMQFIHCAAQDVA-SHLETPVDLILFHA 144 (285)
T ss_dssp SCCEEEEETCTTCHHHHHHHHTTCEEEEEESCH--HHHHHHHHHHHC-CCGGGEEEEESCGGGTG-GGCSSCEEEEEEES
T ss_pred CCCEEEEeCCcchHHHHHHHHCCCEEEEEECCH--HHHHHHHHHHHhcCCCcceEEEEcCHHHhh-hhcCCCceEEEECc
Confidence 467999999999999999999999999999995 799999999988876 4777777776543 13456899999999
Q ss_pred CcCCCccHHHHHHHHHHHhhcCCCeEEEEEeecc---------------------------------CchhHHHHHHHHc
Q 026274 148 VFYDASAFDDLFATITYLLQSSPGSVFITTYHNR---------------------------------SGHHLIEFLMVKW 194 (241)
Q Consensus 148 vly~~~~~~~ll~~~~~lL~~~~~~~~~~~~~~r---------------------------------~~~~~~~~~~~~~ 194 (241)
++++.++...+++.+.++|+ |||.+++....+ .....+..++++.
T Consensus 145 ~l~~~~~~~~~l~~~~~~Lk--pgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~a 222 (285)
T 4htf_A 145 VLEWVADPRSVLQTLWSVLR--PGGVLSLMFYNAHGLLMHNMVAGNFDYVQAGMPKKKKRTLSPDYPRDPTQVYLWLEEA 222 (285)
T ss_dssp CGGGCSCHHHHHHHHHHTEE--EEEEEEEEEEBHHHHHHHHHHTTCHHHHHTTCCCC----CCCSCCBCHHHHHHHHHHT
T ss_pred hhhcccCHHHHHHHHHHHcC--CCeEEEEEEeCCchHHHHHHHhcCHHHHhhhccccccccCCCCCCCCHHHHHHHHHHC
Confidence 99999999999999999998 667666654311 1123456677899
Q ss_pred CCEEEEE
Q 026274 195 GLKCVKL 201 (241)
Q Consensus 195 g~~~~~i 201 (241)
||++..+
T Consensus 223 Gf~v~~~ 229 (285)
T 4htf_A 223 GWQIMGK 229 (285)
T ss_dssp TCEEEEE
T ss_pred CCceeee
Confidence 9999876
|
| >3e23_A Uncharacterized protein RPA2492; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; HET: SAM; 1.60A {Rhodopseudomonas palustris} | Back alignment and structure |
|---|
Probab=99.63 E-value=9.9e-15 Score=119.26 Aligned_cols=121 Identities=21% Similarity=0.293 Sum_probs=96.8
Q ss_pred CCCeEEEecCCCCHHHHHHHHhCCEEEEEcCCCcHHHHHHHHHHHHHcCCceEEEEeecCCCCcCcCCCCCcEEEEcCCc
Q 026274 70 SGANVVELGAGTSLPGLVAAKVGSNVTLTDDSNRIEVLKNMRRVCEMNKLNCRVMGLTWGFLDASIFDLNPNIILGADVF 149 (241)
Q Consensus 70 ~~~~VLElGcGtGl~sl~la~~g~~V~~tD~~~~~~~l~~~~~n~~~n~~~~~~~~l~w~~~~~~~~~~~fDlIl~~dvl 149 (241)
++.+|||+|||+|..+..+++.|.+|+++|+++ ++++.++++. .+.+...+..+.. .+.+||+|+++.++
T Consensus 43 ~~~~vLDiGcG~G~~~~~l~~~~~~v~~vD~s~--~~~~~a~~~~-----~~~~~~~d~~~~~---~~~~fD~v~~~~~l 112 (211)
T 3e23_A 43 AGAKILELGCGAGYQAEAMLAAGFDVDATDGSP--ELAAEASRRL-----GRPVRTMLFHQLD---AIDAYDAVWAHACL 112 (211)
T ss_dssp TTCEEEESSCTTSHHHHHHHHTTCEEEEEESCH--HHHHHHHHHH-----TSCCEECCGGGCC---CCSCEEEEEECSCG
T ss_pred CCCcEEEECCCCCHHHHHHHHcCCeEEEECCCH--HHHHHHHHhc-----CCceEEeeeccCC---CCCcEEEEEecCch
Confidence 578999999999999999999999999999995 6999998877 2444555555432 45689999999999
Q ss_pred CCCc--cHHHHHHHHHHHhhcCCCeEEEEEeecc--------------CchhHHHHHHHHcC-CEEEEEe
Q 026274 150 YDAS--AFDDLFATITYLLQSSPGSVFITTYHNR--------------SGHHLIEFLMVKWG-LKCVKLV 202 (241)
Q Consensus 150 y~~~--~~~~ll~~~~~lL~~~~~~~~~~~~~~r--------------~~~~~~~~~~~~~g-~~~~~i~ 202 (241)
++.. ....+++.+.++|+ +||.+++..... .....+..++++.| |+...+.
T Consensus 113 ~~~~~~~~~~~l~~~~~~Lk--pgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aG~f~~~~~~ 180 (211)
T 3e23_A 113 LHVPRDELADVLKLIWRALK--PGGLFYASYKSGEGEGRDKLARYYNYPSEEWLRARYAEAGTWASVAVE 180 (211)
T ss_dssp GGSCHHHHHHHHHHHHHHEE--EEEEEEEEEECCSSCEECTTSCEECCCCHHHHHHHHHHHCCCSEEEEE
T ss_pred hhcCHHHHHHHHHHHHHhcC--CCcEEEEEEcCCCcccccccchhccCCCHHHHHHHHHhCCCcEEEEEE
Confidence 9987 88899999999998 667766664332 23455667788999 9998874
|
| >3e05_A Precorrin-6Y C5,15-methyltransferase (decarboxyla; porphyrin metabolism, S-adenosyl-methionine; 1.80A {Geobacter metallireducens} SCOP: c.66.1.0 | Back alignment and structure |
|---|
Probab=99.62 E-value=6.2e-14 Score=114.12 Aligned_cols=125 Identities=9% Similarity=0.005 Sum_probs=96.7
Q ss_pred CCCCCCeEEEecCCCCHHHHHHHHhC--CEEEEEcCCCcHHHHHHHHHHHHHcCC-ceEEEEeecCCCCcCcCCCCCcEE
Q 026274 67 YRFSGANVVELGAGTSLPGLVAAKVG--SNVTLTDDSNRIEVLKNMRRVCEMNKL-NCRVMGLTWGFLDASIFDLNPNII 143 (241)
Q Consensus 67 ~~~~~~~VLElGcGtGl~sl~la~~g--~~V~~tD~~~~~~~l~~~~~n~~~n~~-~~~~~~l~w~~~~~~~~~~~fDlI 143 (241)
...++.+|||+|||+|..++.+++.+ .+|+++|+++ ++++.+++|+..++. ++++...++.+.... ..+||+|
T Consensus 37 ~~~~~~~vLDiG~G~G~~~~~la~~~~~~~v~~vD~s~--~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~~--~~~~D~i 112 (204)
T 3e05_A 37 RLQDDLVMWDIGAGSASVSIEASNLMPNGRIFALERNP--QYLGFIRDNLKKFVARNVTLVEAFAPEGLDD--LPDPDRV 112 (204)
T ss_dssp TCCTTCEEEEETCTTCHHHHHHHHHCTTSEEEEEECCH--HHHHHHHHHHHHHTCTTEEEEECCTTTTCTT--SCCCSEE
T ss_pred CCCCCCEEEEECCCCCHHHHHHHHHCCCCEEEEEeCCH--HHHHHHHHHHHHhCCCcEEEEeCChhhhhhc--CCCCCEE
Confidence 44567899999999999999999987 6999999995 799999999998876 477777666443222 2579999
Q ss_pred EEcCCcCCCccHHHHHHHHHHHhhcCCCeEEEEEeeccCchhHHHHHHHHcCCEEEE
Q 026274 144 LGADVFYDASAFDDLFATITYLLQSSPGSVFITTYHNRSGHHLIEFLMVKWGLKCVK 200 (241)
Q Consensus 144 l~~dvly~~~~~~~ll~~~~~lL~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~ 200 (241)
++..+++ ....+++.+.++|+ +||.+++..............+++.||.+..
T Consensus 113 ~~~~~~~---~~~~~l~~~~~~Lk--pgG~l~~~~~~~~~~~~~~~~l~~~g~~~~~ 164 (204)
T 3e05_A 113 FIGGSGG---MLEEIIDAVDRRLK--SEGVIVLNAVTLDTLTKAVEFLEDHGYMVEV 164 (204)
T ss_dssp EESCCTT---CHHHHHHHHHHHCC--TTCEEEEEECBHHHHHHHHHHHHHTTCEEEE
T ss_pred EECCCCc---CHHHHHHHHHHhcC--CCeEEEEEecccccHHHHHHHHHHCCCceeE
Confidence 9988775 78899999999998 6677666654444444555667889985433
|
| >3h2b_A SAM-dependent methyltransferase; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; HET: SAH; 2.00A {Corynebacterium glutamicum atcc 13032} | Back alignment and structure |
|---|
Probab=99.62 E-value=1.3e-14 Score=117.77 Aligned_cols=123 Identities=11% Similarity=0.049 Sum_probs=97.8
Q ss_pred CCeEEEecCCCCHHHHHHHHhCCEEEEEcCCCcHHHHHHHHHHHHHcCCceEEEEeecCCCCcCcCCCCCcEEEEcCCcC
Q 026274 71 GANVVELGAGTSLPGLVAAKVGSNVTLTDDSNRIEVLKNMRRVCEMNKLNCRVMGLTWGFLDASIFDLNPNIILGADVFY 150 (241)
Q Consensus 71 ~~~VLElGcGtGl~sl~la~~g~~V~~tD~~~~~~~l~~~~~n~~~n~~~~~~~~l~w~~~~~~~~~~~fDlIl~~dvly 150 (241)
+.+|||+|||+|..+..+++.|.+|+++|+++ ++++.++++ ..++.+...++.+. +..+++||+|++..+++
T Consensus 42 ~~~vLDiGcG~G~~~~~l~~~~~~v~gvD~s~--~~~~~a~~~----~~~~~~~~~d~~~~--~~~~~~fD~v~~~~~l~ 113 (203)
T 3h2b_A 42 DGVILDVGSGTGRWTGHLASLGHQIEGLEPAT--RLVELARQT----HPSVTFHHGTITDL--SDSPKRWAGLLAWYSLI 113 (203)
T ss_dssp CSCEEEETCTTCHHHHHHHHTTCCEEEECCCH--HHHHHHHHH----CTTSEEECCCGGGG--GGSCCCEEEEEEESSST
T ss_pred CCeEEEecCCCCHHHHHHHhcCCeEEEEeCCH--HHHHHHHHh----CCCCeEEeCccccc--ccCCCCeEEEEehhhHh
Confidence 67999999999999999999999999999995 699888876 33566777766553 23456899999999999
Q ss_pred CCc--cHHHHHHHHHHHhhcCCCeEEEEEeecc---------------CchhHHHHHHHHcCCEEEEEec
Q 026274 151 DAS--AFDDLFATITYLLQSSPGSVFITTYHNR---------------SGHHLIEFLMVKWGLKCVKLVD 203 (241)
Q Consensus 151 ~~~--~~~~ll~~~~~lL~~~~~~~~~~~~~~r---------------~~~~~~~~~~~~~g~~~~~i~~ 203 (241)
+.. +...+++.+.++|+ |||.+++..... .....+..++++.||++..+..
T Consensus 114 ~~~~~~~~~~l~~~~~~L~--pgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gf~~~~~~~ 181 (203)
T 3h2b_A 114 HMGPGELPDALVALRMAVE--DGGGLLMSFFSGPSLEPMYHPVATAYRWPLPELAQALETAGFQVTSSHW 181 (203)
T ss_dssp TCCTTTHHHHHHHHHHTEE--EEEEEEEEEECCSSCEEECCSSSCEEECCHHHHHHHHHHTTEEEEEEEE
T ss_pred cCCHHHHHHHHHHHHHHcC--CCcEEEEEEccCCchhhhhchhhhhccCCHHHHHHHHHHCCCcEEEEEe
Confidence 975 89999999999998 567666654322 2345566778899999998843
|
| >3sm3_A SAM-dependent methyltransferases; NESG, structural genomics, PSI-biology, protein structure in northeast structural genomics; 2.20A {Methanosarcina mazei} | Back alignment and structure |
|---|
Probab=99.62 E-value=7.3e-15 Score=121.23 Aligned_cols=102 Identities=16% Similarity=0.191 Sum_probs=84.9
Q ss_pred CCCeEEEecCCCCHHHHHHHHhCCEEEEEcCCCcHHHHHHHHHHHHHcCC------ceEEEEeecCCCCcCcCCCCCcEE
Q 026274 70 SGANVVELGAGTSLPGLVAAKVGSNVTLTDDSNRIEVLKNMRRVCEMNKL------NCRVMGLTWGFLDASIFDLNPNII 143 (241)
Q Consensus 70 ~~~~VLElGcGtGl~sl~la~~g~~V~~tD~~~~~~~l~~~~~n~~~n~~------~~~~~~l~w~~~~~~~~~~~fDlI 143 (241)
++.+|||+|||+|..+..+++.+++|+++|+++ .+++.+++++..++. ++.+...+.... +..+.+||+|
T Consensus 30 ~~~~vLdiG~G~G~~~~~l~~~~~~v~~vD~s~--~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~~--~~~~~~~D~v 105 (235)
T 3sm3_A 30 EDDEILDIGCGSGKISLELASKGYSVTGIDINS--EAIRLAETAARSPGLNQKTGGKAEFKVENASSL--SFHDSSFDFA 105 (235)
T ss_dssp TTCEEEEETCTTSHHHHHHHHTTCEEEEEESCH--HHHHHHHHHTTCCSCCSSSSCEEEEEECCTTSC--CSCTTCEEEE
T ss_pred CCCeEEEECCCCCHHHHHHHhCCCeEEEEECCH--HHHHHHHHHHHhcCCccccCcceEEEEeccccc--CCCCCceeEE
Confidence 678999999999999999999999999999995 699999999887776 466666666543 2335689999
Q ss_pred EEcCCcCCCccHH---HHHHHHHHHhhcCCCeEEEEE
Q 026274 144 LGADVFYDASAFD---DLFATITYLLQSSPGSVFITT 177 (241)
Q Consensus 144 l~~dvly~~~~~~---~ll~~~~~lL~~~~~~~~~~~ 177 (241)
+++.++++..+.. .+++.+.++|+ |||.+++.
T Consensus 106 ~~~~~l~~~~~~~~~~~~l~~~~~~L~--pgG~l~~~ 140 (235)
T 3sm3_A 106 VMQAFLTSVPDPKERSRIIKEVFRVLK--PGAYLYLV 140 (235)
T ss_dssp EEESCGGGCCCHHHHHHHHHHHHHHEE--EEEEEEEE
T ss_pred EEcchhhcCCCHHHHHHHHHHHHHHcC--CCeEEEEE
Confidence 9999999988877 89999999998 56655554
|
| >1y8c_A S-adenosylmethionine-dependent methyltransferase; structural genomics, protein structure initiative, PSI; 2.50A {Clostridium acetobutylicum} SCOP: c.66.1.43 | Back alignment and structure |
|---|
Probab=99.62 E-value=6.6e-15 Score=122.30 Aligned_cols=100 Identities=18% Similarity=0.124 Sum_probs=84.7
Q ss_pred CCCeEEEecCCCCHHHHHHHHhCCEEEEEcCCCcHHHHHHHHHHHHHcCCceEEEEeecCCCCcCcCCCCCcEEEEcC-C
Q 026274 70 SGANVVELGAGTSLPGLVAAKVGSNVTLTDDSNRIEVLKNMRRVCEMNKLNCRVMGLTWGFLDASIFDLNPNIILGAD-V 148 (241)
Q Consensus 70 ~~~~VLElGcGtGl~sl~la~~g~~V~~tD~~~~~~~l~~~~~n~~~n~~~~~~~~l~w~~~~~~~~~~~fDlIl~~d-v 148 (241)
++.+|||+|||+|..+..+++.|.+|+++|+++ .+++.++++...++.++.+...+..+.. ...+||+|+++. +
T Consensus 37 ~~~~vLdiG~G~G~~~~~l~~~~~~~~~~D~s~--~~~~~a~~~~~~~~~~~~~~~~d~~~~~---~~~~fD~v~~~~~~ 111 (246)
T 1y8c_A 37 VFDDYLDLACGTGNLTENLCPKFKNTWAVDLSQ--EMLSEAENKFRSQGLKPRLACQDISNLN---INRKFDLITCCLDS 111 (246)
T ss_dssp CTTEEEEETCTTSTTHHHHGGGSSEEEEECSCH--HHHHHHHHHHHHTTCCCEEECCCGGGCC---CSCCEEEEEECTTG
T ss_pred CCCeEEEeCCCCCHHHHHHHHCCCcEEEEECCH--HHHHHHHHHHhhcCCCeEEEecccccCC---ccCCceEEEEcCcc
Confidence 678999999999999999999999999999995 7999999998887777777777765532 226899999997 9
Q ss_pred cCCC---ccHHHHHHHHHHHhhcCCCeEEEE
Q 026274 149 FYDA---SAFDDLFATITYLLQSSPGSVFIT 176 (241)
Q Consensus 149 ly~~---~~~~~ll~~~~~lL~~~~~~~~~~ 176 (241)
+++. .+...+++.+.++|+ |||.+++
T Consensus 112 l~~~~~~~~~~~~l~~~~~~L~--pgG~l~~ 140 (246)
T 1y8c_A 112 TNYIIDSDDLKKYFKAVSNHLK--EGGVFIF 140 (246)
T ss_dssp GGGCCSHHHHHHHHHHHHTTEE--EEEEEEE
T ss_pred ccccCCHHHHHHHHHHHHHhcC--CCcEEEE
Confidence 9887 678899999999998 5666665
|
| >3f4k_A Putative methyltransferase; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; 2.30A {Bacteroides thetaiotaomicron} PDB: 3t0i_A* 3svz_A* 3sxj_A* | Back alignment and structure |
|---|
Probab=99.62 E-value=2.7e-14 Score=119.83 Aligned_cols=142 Identities=13% Similarity=0.062 Sum_probs=106.9
Q ss_pred ccHHHHHHHHHhcc-CCCCCCeEEEecCCCCHHHHHHHHhCC-EEEEEcCCCcHHHHHHHHHHHHHcCCc--eEEEEeec
Q 026274 53 PCSVILAEYVWQQR-YRFSGANVVELGAGTSLPGLVAAKVGS-NVTLTDDSNRIEVLKNMRRVCEMNKLN--CRVMGLTW 128 (241)
Q Consensus 53 ~~s~~L~~~l~~~~-~~~~~~~VLElGcGtGl~sl~la~~g~-~V~~tD~~~~~~~l~~~~~n~~~n~~~--~~~~~l~w 128 (241)
+.+..+...+.... ...++.+|||+|||+|..+..+++.+. +|+++|+++ .+++.+++++..+++. +++...++
T Consensus 28 ~~~~~~~~~~l~~l~~~~~~~~vLDiG~G~G~~~~~l~~~~~~~v~~vD~s~--~~~~~a~~~~~~~~~~~~~~~~~~d~ 105 (257)
T 3f4k_A 28 PGSPEATRKAVSFINELTDDAKIADIGCGTGGQTLFLADYVKGQITGIDLFP--DFIEIFNENAVKANCADRVKGITGSM 105 (257)
T ss_dssp SCCHHHHHHHHTTSCCCCTTCEEEEETCTTSHHHHHHHHHCCSEEEEEESCH--HHHHHHHHHHHHTTCTTTEEEEECCT
T ss_pred CCCHHHHHHHHHHHhcCCCCCeEEEeCCCCCHHHHHHHHhCCCeEEEEECCH--HHHHHHHHHHHHcCCCCceEEEECCh
Confidence 44444445444433 445678999999999999999999865 999999995 7999999999988864 77888777
Q ss_pred CCCCcCcCCCCCcEEEEcCCcCCCccHHHHHHHHHHHhhcCCCeEEEEEeec---c-----------------CchhHHH
Q 026274 129 GFLDASIFDLNPNIILGADVFYDASAFDDLFATITYLLQSSPGSVFITTYHN---R-----------------SGHHLIE 188 (241)
Q Consensus 129 ~~~~~~~~~~~fDlIl~~dvly~~~~~~~ll~~~~~lL~~~~~~~~~~~~~~---r-----------------~~~~~~~ 188 (241)
.+. +..+.+||+|++..++++. +...+++.+.++|+ |||.+++.... . .......
T Consensus 106 ~~~--~~~~~~fD~v~~~~~l~~~-~~~~~l~~~~~~L~--pgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 180 (257)
T 3f4k_A 106 DNL--PFQNEELDLIWSEGAIYNI-GFERGMNEWSKYLK--KGGFIAVSEASWFTSERPAEIEDFWMDAYPEISVIPTCI 180 (257)
T ss_dssp TSC--SSCTTCEEEEEEESCSCCC-CHHHHHHHHHTTEE--EEEEEEEEEEEESSSCCCHHHHHHHHHHCTTCCBHHHHH
T ss_pred hhC--CCCCCCEEEEEecChHhhc-CHHHHHHHHHHHcC--CCcEEEEEEeeccCCCChHHHHHHHHHhCCCCCCHHHHH
Confidence 553 3335689999999999998 78999999999998 56666555321 0 1122334
Q ss_pred HHHHHcCCEEEEE
Q 026274 189 FLMVKWGLKCVKL 201 (241)
Q Consensus 189 ~~~~~~g~~~~~i 201 (241)
.++++.||.....
T Consensus 181 ~~l~~aGf~~v~~ 193 (257)
T 3f4k_A 181 DKMERAGYTPTAH 193 (257)
T ss_dssp HHHHHTTEEEEEE
T ss_pred HHHHHCCCeEEEE
Confidence 5578899998876
|
| >3l8d_A Methyltransferase; structural genomics, PSI, nysgrc, protein structure initiative, NEW YORK SGX research center for STRU genomics; 1.70A {Bacillus thuringiensis} | Back alignment and structure |
|---|
Probab=99.61 E-value=1.4e-14 Score=120.38 Aligned_cols=137 Identities=12% Similarity=0.062 Sum_probs=104.6
Q ss_pred HHHHHHHhccCCCCCCeEEEecCCCCHHHHHHHHhCCEEEEEcCCCcHHHHHHHHHHHHHcCCceEEEEeecCCCCcCcC
Q 026274 57 ILAEYVWQQRYRFSGANVVELGAGTSLPGLVAAKVGSNVTLTDDSNRIEVLKNMRRVCEMNKLNCRVMGLTWGFLDASIF 136 (241)
Q Consensus 57 ~L~~~l~~~~~~~~~~~VLElGcGtGl~sl~la~~g~~V~~tD~~~~~~~l~~~~~n~~~n~~~~~~~~l~w~~~~~~~~ 136 (241)
.+.+++.... .++.+|||+|||+|..+..+++.|++|+++|+++ .+++.++++. ...++.+...+..+. +..
T Consensus 42 ~~~~~l~~~~--~~~~~vLDiG~G~G~~~~~l~~~~~~v~~vD~s~--~~~~~a~~~~--~~~~~~~~~~d~~~~--~~~ 113 (242)
T 3l8d_A 42 TIIPFFEQYV--KKEAEVLDVGCGDGYGTYKLSRTGYKAVGVDISE--VMIQKGKERG--EGPDLSFIKGDLSSL--PFE 113 (242)
T ss_dssp THHHHHHHHS--CTTCEEEEETCTTSHHHHHHHHTTCEEEEEESCH--HHHHHHHTTT--CBTTEEEEECBTTBC--SSC
T ss_pred HHHHHHHHHc--CCCCeEEEEcCCCCHHHHHHHHcCCeEEEEECCH--HHHHHHHhhc--ccCCceEEEcchhcC--CCC
Confidence 3445554432 2678999999999999999999999999999995 6998888764 344577777777654 333
Q ss_pred CCCCcEEEEcCCcCCCccHHHHHHHHHHHhhcCCCeEEEEEeecc---------------------CchhHHHHHHHHcC
Q 026274 137 DLNPNIILGADVFYDASAFDDLFATITYLLQSSPGSVFITTYHNR---------------------SGHHLIEFLMVKWG 195 (241)
Q Consensus 137 ~~~fDlIl~~dvly~~~~~~~ll~~~~~lL~~~~~~~~~~~~~~r---------------------~~~~~~~~~~~~~g 195 (241)
+.+||+|++..+++|.++...+++.+.++|+ |||.+++..... .....+..++++.|
T Consensus 114 ~~~fD~v~~~~~l~~~~~~~~~l~~~~~~L~--pgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~G 191 (242)
T 3l8d_A 114 NEQFEAIMAINSLEWTEEPLRALNEIKRVLK--SDGYACIAILGPTAKPRENSYPRLYGKDVVCNTMMPWEFEQLVKEQG 191 (242)
T ss_dssp TTCEEEEEEESCTTSSSCHHHHHHHHHHHEE--EEEEEEEEEECTTCGGGGGGGGGGGTCCCSSCCCCHHHHHHHHHHTT
T ss_pred CCCccEEEEcChHhhccCHHHHHHHHHHHhC--CCeEEEEEEcCCcchhhhhhhhhhccccccccCCCHHHHHHHHHHcC
Confidence 5689999999999999999999999999998 567666653211 12234566788999
Q ss_pred CEEEEEec
Q 026274 196 LKCVKLVD 203 (241)
Q Consensus 196 ~~~~~i~~ 203 (241)
|++.....
T Consensus 192 f~~~~~~~ 199 (242)
T 3l8d_A 192 FKVVDGIG 199 (242)
T ss_dssp EEEEEEEE
T ss_pred CEEEEeec
Confidence 99988743
|
| >2p7i_A Hypothetical protein; putative methyltransferase, structural genomics, joint cente structural genomics, JCSG; 1.74A {Pectobacterium atrosepticum SCRI1043} SCOP: c.66.1.41 PDB: 2p7h_A | Back alignment and structure |
|---|
Probab=99.61 E-value=6.1e-15 Score=122.53 Aligned_cols=123 Identities=15% Similarity=0.070 Sum_probs=98.1
Q ss_pred CCCCeEEEecCCCCHHHHHHHHhCCEEEEEcCCCcHHHHHHHHHHHHHcCCceEEEEeecCCCCcCcCCCCCcEEEEcCC
Q 026274 69 FSGANVVELGAGTSLPGLVAAKVGSNVTLTDDSNRIEVLKNMRRVCEMNKLNCRVMGLTWGFLDASIFDLNPNIILGADV 148 (241)
Q Consensus 69 ~~~~~VLElGcGtGl~sl~la~~g~~V~~tD~~~~~~~l~~~~~n~~~n~~~~~~~~l~w~~~~~~~~~~~fDlIl~~dv 148 (241)
.++.+|||+|||+|..+..+++.+.+|+++|+++ ++++.++++... ++++...+..+. ..+++||+|++..+
T Consensus 41 ~~~~~vLDiGcG~G~~~~~l~~~~~~v~gvD~s~--~~~~~a~~~~~~---~v~~~~~d~~~~---~~~~~fD~v~~~~~ 112 (250)
T 2p7i_A 41 FRPGNLLELGSFKGDFTSRLQEHFNDITCVEASE--EAISHAQGRLKD---GITYIHSRFEDA---QLPRRYDNIVLTHV 112 (250)
T ss_dssp CCSSCEEEESCTTSHHHHHHTTTCSCEEEEESCH--HHHHHHHHHSCS---CEEEEESCGGGC---CCSSCEEEEEEESC
T ss_pred cCCCcEEEECCCCCHHHHHHHHhCCcEEEEeCCH--HHHHHHHHhhhC---CeEEEEccHHHc---CcCCcccEEEEhhH
Confidence 4677999999999999999999999999999995 699988887653 567777666554 23568999999999
Q ss_pred cCCCccHHHHHHHHH-HHhhcCCCeEEEEEeeccC--------------------------------chhHHHHHHHHcC
Q 026274 149 FYDASAFDDLFATIT-YLLQSSPGSVFITTYHNRS--------------------------------GHHLIEFLMVKWG 195 (241)
Q Consensus 149 ly~~~~~~~ll~~~~-~lL~~~~~~~~~~~~~~r~--------------------------------~~~~~~~~~~~~g 195 (241)
++|.++...+++.+. ++|+ |||.+++....+. +...+..++++.|
T Consensus 113 l~~~~~~~~~l~~~~~~~Lk--pgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~G 190 (250)
T 2p7i_A 113 LEHIDDPVALLKRINDDWLA--EGGRLFLVCPNANAVSRQIAVKMGIISHNSAVTEAEFAHGHRCTYALDTLERDASRAG 190 (250)
T ss_dssp GGGCSSHHHHHHHHHHTTEE--EEEEEEEEEECTTCHHHHHHHHTTSSSSTTCCCHHHHHTTCCCCCCHHHHHHHHHHTT
T ss_pred HHhhcCHHHHHHHHHHHhcC--CCCEEEEEcCChHHHHHHHHHHcCccccchhcccccccccccccCCHHHHHHHHHHCC
Confidence 999999999999999 9998 5676666543221 2234456678999
Q ss_pred CEEEEE
Q 026274 196 LKCVKL 201 (241)
Q Consensus 196 ~~~~~i 201 (241)
|++...
T Consensus 191 f~~~~~ 196 (250)
T 2p7i_A 191 LQVTYR 196 (250)
T ss_dssp CEEEEE
T ss_pred CeEEEE
Confidence 999887
|
| >3dlc_A Putative S-adenosyl-L-methionine-dependent methyltransferase; structural genomics, joint center for structural genomics; HET: MSE SAM; 1.15A {Methanococcus maripaludis} | Back alignment and structure |
|---|
Probab=99.61 E-value=3.3e-15 Score=121.83 Aligned_cols=114 Identities=16% Similarity=0.156 Sum_probs=91.3
Q ss_pred HHHHHHHhccCCCCCCeEEEecCCCCHHHHHHHHh-CCEEEEEcCCCcHHHHHHHHHHHHHcCC--ceEEEEeecCCCCc
Q 026274 57 ILAEYVWQQRYRFSGANVVELGAGTSLPGLVAAKV-GSNVTLTDDSNRIEVLKNMRRVCEMNKL--NCRVMGLTWGFLDA 133 (241)
Q Consensus 57 ~L~~~l~~~~~~~~~~~VLElGcGtGl~sl~la~~-g~~V~~tD~~~~~~~l~~~~~n~~~n~~--~~~~~~l~w~~~~~ 133 (241)
.+++.+........+ +|||+|||+|..+..+++. +.+|+++|+++ .+++.+++++..++. ++++...++.+.
T Consensus 31 ~~~~~~~~~~~~~~~-~vLdiG~G~G~~~~~l~~~~~~~v~~~D~s~--~~~~~a~~~~~~~~~~~~~~~~~~d~~~~-- 105 (219)
T 3dlc_A 31 IIAENIINRFGITAG-TCIDIGSGPGALSIALAKQSDFSIRALDFSK--HMNEIALKNIADANLNDRIQIVQGDVHNI-- 105 (219)
T ss_dssp HHHHHHHHHHCCCEE-EEEEETCTTSHHHHHHHHHSEEEEEEEESCH--HHHHHHHHHHHHTTCTTTEEEEECBTTBC--
T ss_pred HHHHHHHHhcCCCCC-EEEEECCCCCHHHHHHHHcCCCeEEEEECCH--HHHHHHHHHHHhccccCceEEEEcCHHHC--
Confidence 344444443332333 9999999999999999997 66999999995 799999999988876 477777777653
Q ss_pred CcCCCCCcEEEEcCCcCCCccHHHHHHHHHHHhhcCCCeEEEEE
Q 026274 134 SIFDLNPNIILGADVFYDASAFDDLFATITYLLQSSPGSVFITT 177 (241)
Q Consensus 134 ~~~~~~fDlIl~~dvly~~~~~~~ll~~~~~lL~~~~~~~~~~~ 177 (241)
+..+.+||+|+++.++++.++...+++.+.++|+ |||.+++.
T Consensus 106 ~~~~~~~D~v~~~~~l~~~~~~~~~l~~~~~~L~--pgG~l~~~ 147 (219)
T 3dlc_A 106 PIEDNYADLIVSRGSVFFWEDVATAFREIYRILK--SGGKTYIG 147 (219)
T ss_dssp SSCTTCEEEEEEESCGGGCSCHHHHHHHHHHHEE--EEEEEEEE
T ss_pred CCCcccccEEEECchHhhccCHHHHHHHHHHhCC--CCCEEEEE
Confidence 2345689999999999999999999999999998 66776665
|
| >3hm2_A Precorrin-6Y C5,15-methyltransferase; alpha-beta-sandwich, structural genomics, PSI-2, protein structure initiative; 2.21A {Corynebacterium diphtheriae} | Back alignment and structure |
|---|
Probab=99.61 E-value=1.7e-14 Score=114.30 Aligned_cols=125 Identities=10% Similarity=0.026 Sum_probs=93.1
Q ss_pred CCCCCCeEEEecCCCCHHHHHHHHh--CCEEEEEcCCCcHHHHHHHHHHHHHcCCc--eEEEEeecCCCCcCcCCCCCcE
Q 026274 67 YRFSGANVVELGAGTSLPGLVAAKV--GSNVTLTDDSNRIEVLKNMRRVCEMNKLN--CRVMGLTWGFLDASIFDLNPNI 142 (241)
Q Consensus 67 ~~~~~~~VLElGcGtGl~sl~la~~--g~~V~~tD~~~~~~~l~~~~~n~~~n~~~--~~~~~l~w~~~~~~~~~~~fDl 142 (241)
...++.+|||+|||+|..++.+++. +.+|+++|+++ ++++.+++|+..++.. + +...+..+.. +....+||+
T Consensus 22 ~~~~~~~vldiG~G~G~~~~~l~~~~~~~~v~~vD~~~--~~~~~a~~~~~~~~~~~~~-~~~~d~~~~~-~~~~~~~D~ 97 (178)
T 3hm2_A 22 APKPHETLWDIGGGSGSIAIEWLRSTPQTTAVCFEISE--ERRERILSNAINLGVSDRI-AVQQGAPRAF-DDVPDNPDV 97 (178)
T ss_dssp CCCTTEEEEEESTTTTHHHHHHHTTSSSEEEEEECSCH--HHHHHHHHHHHTTTCTTSE-EEECCTTGGG-GGCCSCCSE
T ss_pred cccCCCeEEEeCCCCCHHHHHHHHHCCCCeEEEEeCCH--HHHHHHHHHHHHhCCCCCE-EEecchHhhh-hccCCCCCE
Confidence 3456789999999999999999987 56999999995 6999999999888764 4 4444443211 112268999
Q ss_pred EEEcCCcCCCccHHHHHHHHHHHhhcCCCeEEEEEeeccCchhHHHHHHHHcCCEEEEE
Q 026274 143 ILGADVFYDASAFDDLFATITYLLQSSPGSVFITTYHNRSGHHLIEFLMVKWGLKCVKL 201 (241)
Q Consensus 143 Il~~dvly~~~~~~~ll~~~~~lL~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~i 201 (241)
|+++.++++ ..+++.+.++|+ +||.+++.............++++.|+++..+
T Consensus 98 i~~~~~~~~----~~~l~~~~~~L~--~gG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 150 (178)
T 3hm2_A 98 IFIGGGLTA----PGVFAAAWKRLP--VGGRLVANAVTVESEQMLWALRKQFGGTISSF 150 (178)
T ss_dssp EEECC-TTC----TTHHHHHHHTCC--TTCEEEEEECSHHHHHHHHHHHHHHCCEEEEE
T ss_pred EEECCcccH----HHHHHHHHHhcC--CCCEEEEEeeccccHHHHHHHHHHcCCeeEEE
Confidence 999999887 678899999998 66777666544444444555677888888775
|
| >3lcc_A Putative methyl chloride transferase; halide methyltransferase; HET: SAH; 1.80A {Arabidopsis thaliana} | Back alignment and structure |
|---|
Probab=99.61 E-value=2.4e-14 Score=118.99 Aligned_cols=139 Identities=15% Similarity=0.064 Sum_probs=105.2
Q ss_pred HHHHHHHHhccCCCCCCeEEEecCCCCHHHHHHHHhCCEEEEEcCCCcHHHHHHHHHHHHHcC--CceEEEEeecCCCCc
Q 026274 56 VILAEYVWQQRYRFSGANVVELGAGTSLPGLVAAKVGSNVTLTDDSNRIEVLKNMRRVCEMNK--LNCRVMGLTWGFLDA 133 (241)
Q Consensus 56 ~~L~~~l~~~~~~~~~~~VLElGcGtGl~sl~la~~g~~V~~tD~~~~~~~l~~~~~n~~~n~--~~~~~~~l~w~~~~~ 133 (241)
..+.+++... ..++.+|||+|||+|..+..+++.|.+|+++|+++ .+++.+++++...+ .++++...|+.+..
T Consensus 54 ~~l~~~~~~~--~~~~~~vLDiGcG~G~~~~~l~~~~~~v~gvD~s~--~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~- 128 (235)
T 3lcc_A 54 PLIVHLVDTS--SLPLGRALVPGCGGGHDVVAMASPERFVVGLDISE--SALAKANETYGSSPKAEYFSFVKEDVFTWR- 128 (235)
T ss_dssp HHHHHHHHTT--CSCCEEEEEETCTTCHHHHHHCBTTEEEEEECSCH--HHHHHHHHHHTTSGGGGGEEEECCCTTTCC-
T ss_pred HHHHHHHHhc--CCCCCCEEEeCCCCCHHHHHHHhCCCeEEEEECCH--HHHHHHHHHhhccCCCcceEEEECchhcCC-
Confidence 3455555433 23445999999999999999999888999999995 69999999887643 35777777776543
Q ss_pred CcCCCCCcEEEEcCCcCCCc--cHHHHHHHHHHHhhcCCCeEEEEE-eecc---------CchhHHHHHHHHcCCEEEEE
Q 026274 134 SIFDLNPNIILGADVFYDAS--AFDDLFATITYLLQSSPGSVFITT-YHNR---------SGHHLIEFLMVKWGLKCVKL 201 (241)
Q Consensus 134 ~~~~~~fDlIl~~dvly~~~--~~~~ll~~~~~lL~~~~~~~~~~~-~~~r---------~~~~~~~~~~~~~g~~~~~i 201 (241)
.+.+||+|+++.++++.+ ....+++.+.++|+ |||.+++. +... .....+..++++.||+...+
T Consensus 129 --~~~~fD~v~~~~~l~~~~~~~~~~~l~~~~~~Lk--pgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gf~~~~~ 204 (235)
T 3lcc_A 129 --PTELFDLIFDYVFFCAIEPEMRPAWAKSMYELLK--PDGELITLMYPITDHVGGPPYKVDVSTFEEVLVPIGFKAVSV 204 (235)
T ss_dssp --CSSCEEEEEEESSTTTSCGGGHHHHHHHHHHHEE--EEEEEEEEECCCSCCCSCSSCCCCHHHHHHHHGGGTEEEEEE
T ss_pred --CCCCeeEEEEChhhhcCCHHHHHHHHHHHHHHCC--CCcEEEEEEecccccCCCCCccCCHHHHHHHHHHcCCeEEEE
Confidence 345899999999999877 89999999999998 55655543 3221 22345667788999999887
Q ss_pred ec
Q 026274 202 VD 203 (241)
Q Consensus 202 ~~ 203 (241)
..
T Consensus 205 ~~ 206 (235)
T 3lcc_A 205 EE 206 (235)
T ss_dssp EE
T ss_pred Ee
Confidence 44
|
| >2yxd_A Probable cobalt-precorrin-6Y C(15)-methyltransfer [decarboxylating]; alpha and beta protein (A/B) class; HET: MES; 2.30A {Methanocaldococcus jannaschii} | Back alignment and structure |
|---|
Probab=99.61 E-value=2.2e-14 Score=113.69 Aligned_cols=136 Identities=10% Similarity=0.002 Sum_probs=101.9
Q ss_pred ccHHHHHHHHHhccCCCCCCeEEEecCCCCHHHHHHHHhCCEEEEEcCCCcHHHHHHHHHHHHHcCC-ceEEEEeecCCC
Q 026274 53 PCSVILAEYVWQQRYRFSGANVVELGAGTSLPGLVAAKVGSNVTLTDDSNRIEVLKNMRRVCEMNKL-NCRVMGLTWGFL 131 (241)
Q Consensus 53 ~~s~~L~~~l~~~~~~~~~~~VLElGcGtGl~sl~la~~g~~V~~tD~~~~~~~l~~~~~n~~~n~~-~~~~~~l~w~~~ 131 (241)
+....+..++.......++.+|||+|||+|..+..+++.+.+|+++|+++ .+++.+++|+..++. ++.+...++.+.
T Consensus 18 ~~~~~~~~~~~~~~~~~~~~~vLdiG~G~G~~~~~l~~~~~~v~~vD~~~--~~~~~a~~~~~~~~~~~~~~~~~d~~~~ 95 (183)
T 2yxd_A 18 ITKEEIRAVSIGKLNLNKDDVVVDVGCGSGGMTVEIAKRCKFVYAIDYLD--GAIEVTKQNLAKFNIKNCQIIKGRAEDV 95 (183)
T ss_dssp CCCHHHHHHHHHHHCCCTTCEEEEESCCCSHHHHHHHTTSSEEEEEECSH--HHHHHHHHHHHHTTCCSEEEEESCHHHH
T ss_pred cCHHHHHHHHHHHcCCCCCCEEEEeCCCCCHHHHHHHhcCCeEEEEeCCH--HHHHHHHHHHHHcCCCcEEEEECCcccc
Confidence 34445555555544556778999999999999999999777999999995 799999999998886 577777776542
Q ss_pred CcCcCCCCCcEEEEcCCcCCCccHHHHHHHHHHHhhcCCCeEEEEEeeccCchhHHHHHHHHcCCEEEEE
Q 026274 132 DASIFDLNPNIILGADVFYDASAFDDLFATITYLLQSSPGSVFITTYHNRSGHHLIEFLMVKWGLKCVKL 201 (241)
Q Consensus 132 ~~~~~~~~fDlIl~~dvly~~~~~~~ll~~~~~lL~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~i 201 (241)
..+.+||+|+++.+ .....+++.+.++ ++|.+++..............+++.|+.+..+
T Consensus 96 ---~~~~~~D~i~~~~~----~~~~~~l~~~~~~----~gG~l~~~~~~~~~~~~~~~~l~~~g~~~~~~ 154 (183)
T 2yxd_A 96 ---LDKLEFNKAFIGGT----KNIEKIIEILDKK----KINHIVANTIVLENAAKIINEFESRGYNVDAV 154 (183)
T ss_dssp ---GGGCCCSEEEECSC----SCHHHHHHHHHHT----TCCEEEEEESCHHHHHHHHHHHHHTTCEEEEE
T ss_pred ---ccCCCCcEEEECCc----ccHHHHHHHHhhC----CCCEEEEEecccccHHHHHHHHHHcCCeEEEE
Confidence 22358999999988 6788888888888 56666666544333344455678889888766
|
| >2o57_A Putative sarcosine dimethylglycine methyltransferase; structural genomics, protein structure initiative, PSI-2; 1.95A {Galdieria sulphuraria} SCOP: c.66.1.18 | Back alignment and structure |
|---|
Probab=99.61 E-value=2.9e-14 Score=122.52 Aligned_cols=141 Identities=17% Similarity=0.126 Sum_probs=106.2
Q ss_pred HHHHHHHHhcc----CCCCCCeEEEecCCCCHHHHHHHHh-CCEEEEEcCCCcHHHHHHHHHHHHHcCC--ceEEEEeec
Q 026274 56 VILAEYVWQQR----YRFSGANVVELGAGTSLPGLVAAKV-GSNVTLTDDSNRIEVLKNMRRVCEMNKL--NCRVMGLTW 128 (241)
Q Consensus 56 ~~L~~~l~~~~----~~~~~~~VLElGcGtGl~sl~la~~-g~~V~~tD~~~~~~~l~~~~~n~~~n~~--~~~~~~l~w 128 (241)
..+.+.+.... ...++.+|||+|||+|..+..+++. |++|+++|+++ .+++.+++++...+. ++++...++
T Consensus 64 ~~~~~~l~~~l~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~~~~v~gvD~s~--~~~~~a~~~~~~~~~~~~~~~~~~d~ 141 (297)
T 2o57_A 64 LRTDEWLASELAMTGVLQRQAKGLDLGAGYGGAARFLVRKFGVSIDCLNIAP--VQNKRNEEYNNQAGLADNITVKYGSF 141 (297)
T ss_dssp HHHHHHHHHHHHHTTCCCTTCEEEEETCTTSHHHHHHHHHHCCEEEEEESCH--HHHHHHHHHHHHHTCTTTEEEEECCT
T ss_pred HHHHHHHHHHhhhccCCCCCCEEEEeCCCCCHHHHHHHHHhCCEEEEEeCCH--HHHHHHHHHHHhcCCCcceEEEEcCc
Confidence 33444444433 4557789999999999999999986 88999999995 699999999887775 477777777
Q ss_pred CCCCcCcCCCCCcEEEEcCCcCCCccHHHHHHHHHHHhhcCCCeEEEEEeeccC---------------------chhHH
Q 026274 129 GFLDASIFDLNPNIILGADVFYDASAFDDLFATITYLLQSSPGSVFITTYHNRS---------------------GHHLI 187 (241)
Q Consensus 129 ~~~~~~~~~~~fDlIl~~dvly~~~~~~~ll~~~~~lL~~~~~~~~~~~~~~r~---------------------~~~~~ 187 (241)
.+. +..+.+||+|++.++++|.++...+++.+.++|+ |||.+++...... .....
T Consensus 142 ~~~--~~~~~~fD~v~~~~~l~~~~~~~~~l~~~~~~Lk--pgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 217 (297)
T 2o57_A 142 LEI--PCEDNSYDFIWSQDAFLHSPDKLKVFQECARVLK--PRGVMAITDPMKEDGIDKSSIQPILDRIKLHDMGSLGLY 217 (297)
T ss_dssp TSC--SSCTTCEEEEEEESCGGGCSCHHHHHHHHHHHEE--EEEEEEEEEEEECTTCCGGGGHHHHHHHTCSSCCCHHHH
T ss_pred ccC--CCCCCCEeEEEecchhhhcCCHHHHHHHHHHHcC--CCeEEEEEEeccCCCCchHHHHHHHHHhcCCCCCCHHHH
Confidence 653 3345689999999999999999999999999999 5666555422110 12223
Q ss_pred HHHHHHcCCEEEEEe
Q 026274 188 EFLMVKWGLKCVKLV 202 (241)
Q Consensus 188 ~~~~~~~g~~~~~i~ 202 (241)
..++++.||+...+.
T Consensus 218 ~~~l~~aGf~~~~~~ 232 (297)
T 2o57_A 218 RSLAKECGLVTLRTF 232 (297)
T ss_dssp HHHHHHTTEEEEEEE
T ss_pred HHHHHHCCCeEEEEE
Confidence 445688999988763
|
| >3hem_A Cyclopropane-fatty-acyl-phospholipid synthase 2; protein-ligand complex, cytoplasm, lipid synthesis, methyltransferase; HET: D22; 2.39A {Mycobacterium tuberculosis} SCOP: c.66.1.18 PDB: 1kpi_A* | Back alignment and structure |
|---|
Probab=99.60 E-value=4.4e-14 Score=121.96 Aligned_cols=111 Identities=14% Similarity=0.102 Sum_probs=89.5
Q ss_pred HHHHHHhccCCCCCCeEEEecCCCCHHHHHHHHh-CCEEEEEcCCCcHHHHHHHHHHHHHcCCc--eEEEEeecCCCCcC
Q 026274 58 LAEYVWQQRYRFSGANVVELGAGTSLPGLVAAKV-GSNVTLTDDSNRIEVLKNMRRVCEMNKLN--CRVMGLTWGFLDAS 134 (241)
Q Consensus 58 L~~~l~~~~~~~~~~~VLElGcGtGl~sl~la~~-g~~V~~tD~~~~~~~l~~~~~n~~~n~~~--~~~~~l~w~~~~~~ 134 (241)
..+.+.......++.+|||||||+|..+..+++. |++|+++|+++ ++++.+++++..+++. +++...|+.+.
T Consensus 60 ~~~~~~~~~~~~~~~~vLDiGcG~G~~~~~la~~~~~~v~gvD~s~--~~~~~a~~~~~~~~~~~~v~~~~~d~~~~--- 134 (302)
T 3hem_A 60 KRKLALDKLNLEPGMTLLDIGCGWGSTMRHAVAEYDVNVIGLTLSE--NQYAHDKAMFDEVDSPRRKEVRIQGWEEF--- 134 (302)
T ss_dssp HHHHHHHTTCCCTTCEEEEETCTTSHHHHHHHHHHCCEEEEEECCH--HHHHHHHHHHHHSCCSSCEEEEECCGGGC---
T ss_pred HHHHHHHHcCCCCcCEEEEeeccCcHHHHHHHHhCCCEEEEEECCH--HHHHHHHHHHHhcCCCCceEEEECCHHHc---
Confidence 3344554445567889999999999999999997 89999999995 7999999999988764 77777777543
Q ss_pred cCCCCCcEEEEcCCcCCCcc---------HHHHHHHHHHHhhcCCCeEEEEE
Q 026274 135 IFDLNPNIILGADVFYDASA---------FDDLFATITYLLQSSPGSVFITT 177 (241)
Q Consensus 135 ~~~~~fDlIl~~dvly~~~~---------~~~ll~~~~~lL~~~~~~~~~~~ 177 (241)
+++||+|++..++++.++ ...+++.+.++|+ |||.+++.
T Consensus 135 --~~~fD~v~~~~~~~~~~d~~~~~~~~~~~~~l~~~~~~Lk--pgG~l~i~ 182 (302)
T 3hem_A 135 --DEPVDRIVSLGAFEHFADGAGDAGFERYDTFFKKFYNLTP--DDGRMLLH 182 (302)
T ss_dssp --CCCCSEEEEESCGGGTTCCSSCCCTTHHHHHHHHHHHSSC--TTCEEEEE
T ss_pred --CCCccEEEEcchHHhcCccccccchhHHHHHHHHHHHhcC--CCcEEEEE
Confidence 568999999999998844 4899999999998 55655544
|
| >1kpg_A CFA synthase;, cyclopropane-fatty-acyl-phospholipid synthase 1; mixed alpha beta fold, structural genomics, PSI; HET: SAH 16A; 2.00A {Mycobacterium tuberculosis} SCOP: c.66.1.18 PDB: 1kp9_A* 1kph_A* 1tpy_A* 1l1e_A* | Back alignment and structure |
|---|
Probab=99.60 E-value=5.3e-14 Score=120.28 Aligned_cols=115 Identities=17% Similarity=0.213 Sum_probs=91.3
Q ss_pred cHHHHHHHHHhccCCCCCCeEEEecCCCCHHHHHHH-HhCCEEEEEcCCCcHHHHHHHHHHHHHcCC--ceEEEEeecCC
Q 026274 54 CSVILAEYVWQQRYRFSGANVVELGAGTSLPGLVAA-KVGSNVTLTDDSNRIEVLKNMRRVCEMNKL--NCRVMGLTWGF 130 (241)
Q Consensus 54 ~s~~L~~~l~~~~~~~~~~~VLElGcGtGl~sl~la-~~g~~V~~tD~~~~~~~l~~~~~n~~~n~~--~~~~~~l~w~~ 130 (241)
+...+.+.+.......++.+|||+|||+|..+..++ +.|++|+++|+++ ++++.+++++...+. ++.+...++.+
T Consensus 48 a~~~~~~~~~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~~~~v~gvd~s~--~~~~~a~~~~~~~~~~~~~~~~~~d~~~ 125 (287)
T 1kpg_A 48 AQIAKIDLALGKLGLQPGMTLLDVGCGWGATMMRAVEKYDVNVVGLTLSK--NQANHVQQLVANSENLRSKRVLLAGWEQ 125 (287)
T ss_dssp HHHHHHHHHHTTTTCCTTCEEEEETCTTSHHHHHHHHHHCCEEEEEESCH--HHHHHHHHHHHTCCCCSCEEEEESCGGG
T ss_pred HHHHHHHHHHHHcCCCCcCEEEEECCcccHHHHHHHHHcCCEEEEEECCH--HHHHHHHHHHHhcCCCCCeEEEECChhh
Confidence 334455566665555678899999999999999998 5688999999995 799999999887765 56777766643
Q ss_pred CCcCcCCCCCcEEEEcCCcCCC--ccHHHHHHHHHHHhhcCCCeEEEEE
Q 026274 131 LDASIFDLNPNIILGADVFYDA--SAFDDLFATITYLLQSSPGSVFITT 177 (241)
Q Consensus 131 ~~~~~~~~~fDlIl~~dvly~~--~~~~~ll~~~~~lL~~~~~~~~~~~ 177 (241)
. +++||+|++.++++|. .+...+++.+.++|+ |||.+++.
T Consensus 126 ~-----~~~fD~v~~~~~l~~~~~~~~~~~l~~~~~~Lk--pgG~l~~~ 167 (287)
T 1kpg_A 126 F-----DEPVDRIVSIGAFEHFGHERYDAFFSLAHRLLP--ADGVMLLH 167 (287)
T ss_dssp C-----CCCCSEEEEESCGGGTCTTTHHHHHHHHHHHSC--TTCEEEEE
T ss_pred C-----CCCeeEEEEeCchhhcChHHHHHHHHHHHHhcC--CCCEEEEE
Confidence 2 1689999999999987 789999999999998 55655544
|
| >3vc1_A Geranyl diphosphate 2-C-methyltransferase; rossmann fold, methyltransferase fold, SAM-dependent methyltransferase; HET: SAH GST GOL; 1.82A {Streptomyces coelicolor} PDB: 3vc2_A* 4f84_A* 4f85_A 4f86_A* | Back alignment and structure |
|---|
Probab=99.60 E-value=4.4e-14 Score=122.69 Aligned_cols=128 Identities=15% Similarity=0.040 Sum_probs=100.5
Q ss_pred CCCCCeEEEecCCCCHHHHHHHHh-CCEEEEEcCCCcHHHHHHHHHHHHHcCCc--eEEEEeecCCCCcCcCCCCCcEEE
Q 026274 68 RFSGANVVELGAGTSLPGLVAAKV-GSNVTLTDDSNRIEVLKNMRRVCEMNKLN--CRVMGLTWGFLDASIFDLNPNIIL 144 (241)
Q Consensus 68 ~~~~~~VLElGcGtGl~sl~la~~-g~~V~~tD~~~~~~~l~~~~~n~~~n~~~--~~~~~l~w~~~~~~~~~~~fDlIl 144 (241)
..++.+|||+|||+|..+..+++. |++|+++|+++ ++++.+++++..+++. +++...|+.+. +..+++||+|+
T Consensus 115 ~~~~~~vLDiGcG~G~~~~~la~~~~~~v~gvD~s~--~~~~~a~~~~~~~~~~~~v~~~~~d~~~~--~~~~~~fD~V~ 190 (312)
T 3vc1_A 115 AGPDDTLVDAGCGRGGSMVMAHRRFGSRVEGVTLSA--AQADFGNRRARELRIDDHVRSRVCNMLDT--PFDKGAVTASW 190 (312)
T ss_dssp CCTTCEEEEESCTTSHHHHHHHHHHCCEEEEEESCH--HHHHHHHHHHHHTTCTTTEEEEECCTTSC--CCCTTCEEEEE
T ss_pred CCCCCEEEEecCCCCHHHHHHHHHcCCEEEEEeCCH--HHHHHHHHHHHHcCCCCceEEEECChhcC--CCCCCCEeEEE
Confidence 456789999999999999999997 88999999995 7999999999988864 78887777653 23456899999
Q ss_pred EcCCcCCCccHHHHHHHHHHHhhcCCCeEEEEEe-eccC---------------------chhHHHHHHHHcCCEEEEEe
Q 026274 145 GADVFYDASAFDDLFATITYLLQSSPGSVFITTY-HNRS---------------------GHHLIEFLMVKWGLKCVKLV 202 (241)
Q Consensus 145 ~~dvly~~~~~~~ll~~~~~lL~~~~~~~~~~~~-~~r~---------------------~~~~~~~~~~~~g~~~~~i~ 202 (241)
+.+++++. +...+++.+.++|+ |||.+++.. .... ....+..++++.||+...+.
T Consensus 191 ~~~~l~~~-~~~~~l~~~~~~Lk--pgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~l~~aGf~~~~~~ 267 (312)
T 3vc1_A 191 NNESTMYV-DLHDLFSEHSRFLK--VGGRYVTITGCWNPRYGQPSKWVSQINAHFECNIHSRREYLRAMADNRLVPHTIV 267 (312)
T ss_dssp EESCGGGS-CHHHHHHHHHHHEE--EEEEEEEEEEEECTTTCSCCHHHHHHHHHHTCCCCBHHHHHHHHHTTTEEEEEEE
T ss_pred ECCchhhC-CHHHHHHHHHHHcC--CCcEEEEEEccccccccchhHHHHHHHhhhcCCCCCHHHHHHHHHHCCCEEEEEE
Confidence 99999998 49999999999998 556554432 1111 12234456788999988773
|
| >3mgg_A Methyltransferase; NYSGXRC, PSI-II, protein structure initiative, structural genomics, NEW YORK SGX research center for structural genomics; 1.86A {Methanosarcina mazei} | Back alignment and structure |
|---|
Probab=99.60 E-value=4.1e-14 Score=120.23 Aligned_cols=119 Identities=21% Similarity=0.240 Sum_probs=95.6
Q ss_pred ccHHHHHHHHHhccCCCCCCeEEEecCCCCHHHHHHHHh--CCEEEEEcCCCcHHHHHHHHHHHHHcCC-ceEEEEeecC
Q 026274 53 PCSVILAEYVWQQRYRFSGANVVELGAGTSLPGLVAAKV--GSNVTLTDDSNRIEVLKNMRRVCEMNKL-NCRVMGLTWG 129 (241)
Q Consensus 53 ~~s~~L~~~l~~~~~~~~~~~VLElGcGtGl~sl~la~~--g~~V~~tD~~~~~~~l~~~~~n~~~n~~-~~~~~~l~w~ 129 (241)
.....+.+++.......++.+|||+|||+|..+..+++. +.+|+++|+++ .+++.+++++..++. ++.+...+..
T Consensus 20 ~~~~~l~~~l~~~~~~~~~~~vLDiG~G~G~~~~~l~~~~~~~~v~~vD~s~--~~~~~a~~~~~~~~~~~~~~~~~d~~ 97 (276)
T 3mgg_A 20 EQAETLEKLLHHDTVYPPGAKVLEAGCGIGAQTVILAKNNPDAEITSIDISP--ESLEKARENTEKNGIKNVKFLQANIF 97 (276)
T ss_dssp ---CHHHHHHHTTCCCCTTCEEEETTCTTSHHHHHHHHHCTTSEEEEEESCH--HHHHHHHHHHHHTTCCSEEEEECCGG
T ss_pred HHHHHHHHHHhhcccCCCCCeEEEecCCCCHHHHHHHHhCCCCEEEEEECCH--HHHHHHHHHHHHcCCCCcEEEEcccc
Confidence 334556667766655567889999999999999999998 56999999995 699999999988776 5777777766
Q ss_pred CCCcCcCCCCCcEEEEcCCcCCCccHHHHHHHHHHHhhcCCCeEEEEE
Q 026274 130 FLDASIFDLNPNIILGADVFYDASAFDDLFATITYLLQSSPGSVFITT 177 (241)
Q Consensus 130 ~~~~~~~~~~fDlIl~~dvly~~~~~~~ll~~~~~lL~~~~~~~~~~~ 177 (241)
+. +..+.+||+|+++.++++.++...+++.+.++|+ |||.+++.
T Consensus 98 ~~--~~~~~~fD~v~~~~~l~~~~~~~~~l~~~~~~L~--pgG~l~~~ 141 (276)
T 3mgg_A 98 SL--PFEDSSFDHIFVCFVLEHLQSPEEALKSLKKVLK--PGGTITVI 141 (276)
T ss_dssp GC--CSCTTCEEEEEEESCGGGCSCHHHHHHHHHHHEE--EEEEEEEE
T ss_pred cC--CCCCCCeeEEEEechhhhcCCHHHHHHHHHHHcC--CCcEEEEE
Confidence 43 2335689999999999999999999999999998 56666554
|
| >2xvm_A Tellurite resistance protein TEHB; antibiotic resistance, transferase; HET: SAH; 1.48A {Escherichia coli} PDB: 2xva_A* 4dq0_A* 2i6g_A* | Back alignment and structure |
|---|
Probab=99.60 E-value=3.3e-14 Score=114.47 Aligned_cols=101 Identities=21% Similarity=0.276 Sum_probs=85.3
Q ss_pred CCCCeEEEecCCCCHHHHHHHHhCCEEEEEcCCCcHHHHHHHHHHHHHcCC-ceEEEEeecCCCCcCcCCCCCcEEEEcC
Q 026274 69 FSGANVVELGAGTSLPGLVAAKVGSNVTLTDDSNRIEVLKNMRRVCEMNKL-NCRVMGLTWGFLDASIFDLNPNIILGAD 147 (241)
Q Consensus 69 ~~~~~VLElGcGtGl~sl~la~~g~~V~~tD~~~~~~~l~~~~~n~~~n~~-~~~~~~l~w~~~~~~~~~~~fDlIl~~d 147 (241)
.++.+|||+|||+|..+..+++.|.+|+++|+++ .+++.+++++..++. ++++...++.+.. . +.+||+|+++.
T Consensus 31 ~~~~~vLdiG~G~G~~~~~l~~~~~~v~~vD~s~--~~~~~a~~~~~~~~~~~~~~~~~d~~~~~--~-~~~~D~v~~~~ 105 (199)
T 2xvm_A 31 VKPGKTLDLGCGNGRNSLYLAANGYDVDAWDKNA--MSIANVERIKSIENLDNLHTRVVDLNNLT--F-DRQYDFILSTV 105 (199)
T ss_dssp SCSCEEEEETCTTSHHHHHHHHTTCEEEEEESCH--HHHHHHHHHHHHHTCTTEEEEECCGGGCC--C-CCCEEEEEEES
T ss_pred cCCCeEEEEcCCCCHHHHHHHHCCCeEEEEECCH--HHHHHHHHHHHhCCCCCcEEEEcchhhCC--C-CCCceEEEEcc
Confidence 4677999999999999999999999999999995 699999999988776 6777777776542 2 56899999999
Q ss_pred CcCCCc--cHHHHHHHHHHHhhcCCCeEEEE
Q 026274 148 VFYDAS--AFDDLFATITYLLQSSPGSVFIT 176 (241)
Q Consensus 148 vly~~~--~~~~ll~~~~~lL~~~~~~~~~~ 176 (241)
++++.+ ....+++.+.++|+ +||.+++
T Consensus 106 ~l~~~~~~~~~~~l~~~~~~L~--~gG~l~~ 134 (199)
T 2xvm_A 106 VLMFLEAKTIPGLIANMQRCTK--PGGYNLI 134 (199)
T ss_dssp CGGGSCGGGHHHHHHHHHHTEE--EEEEEEE
T ss_pred hhhhCCHHHHHHHHHHHHHhcC--CCeEEEE
Confidence 999876 88999999999998 5565443
|
| >3grz_A L11 mtase, ribosomal protein L11 methyltransferase; methylase, SAM-binding domain, PSI-2, nysgxrc; 2.00A {Lactobacillus delbrueckii subsp} | Back alignment and structure |
|---|
Probab=99.59 E-value=1.2e-14 Score=118.25 Aligned_cols=153 Identities=14% Similarity=0.053 Sum_probs=114.1
Q ss_pred ceEEEEeccCcCCcceEEeccHHHHHHHHHhccCCCCCCeEEEecCCCCHHHHHHHHhCC-EEEEEcCCCcHHHHHHHHH
Q 026274 34 SFSIAIIENMKEEYGLFVWPCSVILAEYVWQQRYRFSGANVVELGAGTSLPGLVAAKVGS-NVTLTDDSNRIEVLKNMRR 112 (241)
Q Consensus 34 ~~~i~i~~~~~~~~g~~~W~~s~~L~~~l~~~~~~~~~~~VLElGcGtGl~sl~la~~g~-~V~~tD~~~~~~~l~~~~~ 112 (241)
...+.+........ ..++....+.+++.... .++.+|||+|||+|..++.+++.+. +|+++|+++ .+++.+++
T Consensus 28 ~~~~~~~~~~~f~~--~~~~~~~~~~~~l~~~~--~~~~~vLDiG~G~G~~~~~l~~~~~~~v~~vD~s~--~~~~~a~~ 101 (205)
T 3grz_A 28 QEIIRLDPGLAFGT--GNHQTTQLAMLGIERAM--VKPLTVADVGTGSGILAIAAHKLGAKSVLATDISD--ESMTAAEE 101 (205)
T ss_dssp CEEEEESCC-------CCHHHHHHHHHHHHHHC--SSCCEEEEETCTTSHHHHHHHHTTCSEEEEEESCH--HHHHHHHH
T ss_pred ceeEEecCCcccCC--CCCccHHHHHHHHHHhc--cCCCEEEEECCCCCHHHHHHHHCCCCEEEEEECCH--HHHHHHHH
Confidence 44555555443333 35688888888887542 3678999999999999999999877 999999995 79999999
Q ss_pred HHHHcCCc-eEEEEeecCCCCcCcCCCCCcEEEEcCCcCCCccHHHHHHHHHHHhhcCCCeEEEEEeeccCchhHHHHHH
Q 026274 113 VCEMNKLN-CRVMGLTWGFLDASIFDLNPNIILGADVFYDASAFDDLFATITYLLQSSPGSVFITTYHNRSGHHLIEFLM 191 (241)
Q Consensus 113 n~~~n~~~-~~~~~l~w~~~~~~~~~~~fDlIl~~dvly~~~~~~~ll~~~~~lL~~~~~~~~~~~~~~r~~~~~~~~~~ 191 (241)
|+..++.. +++...|+.+. .+.+||+|+++.++. ....+++.+.++|+ ++|.+++..........+...+
T Consensus 102 ~~~~~~~~~v~~~~~d~~~~----~~~~fD~i~~~~~~~---~~~~~l~~~~~~L~--~gG~l~~~~~~~~~~~~~~~~~ 172 (205)
T 3grz_A 102 NAALNGIYDIALQKTSLLAD----VDGKFDLIVANILAE---ILLDLIPQLDSHLN--EDGQVIFSGIDYLQLPKIEQAL 172 (205)
T ss_dssp HHHHTTCCCCEEEESSTTTT----CCSCEEEEEEESCHH---HHHHHGGGSGGGEE--EEEEEEEEEEEGGGHHHHHHHH
T ss_pred HHHHcCCCceEEEecccccc----CCCCceEEEECCcHH---HHHHHHHHHHHhcC--CCCEEEEEecCcccHHHHHHHH
Confidence 99988875 77877777543 246899999986654 35788889999998 6777776644444455566777
Q ss_pred HHcCCEEEEE
Q 026274 192 VKWGLKCVKL 201 (241)
Q Consensus 192 ~~~g~~~~~i 201 (241)
++.||+...+
T Consensus 173 ~~~Gf~~~~~ 182 (205)
T 3grz_A 173 AENSFQIDLK 182 (205)
T ss_dssp HHTTEEEEEE
T ss_pred HHcCCceEEe
Confidence 8999998876
|
| >3kkz_A Uncharacterized protein Q5LES9; putative methyltransferase, BFR250, NESG, structural genomics, PSI-2; HET: SAM; 1.68A {Bacteroides fragilis nctc 9343} PDB: 3e7p_A 3t7s_A* 3t7r_A* 3t7t_A* | Back alignment and structure |
|---|
Probab=99.59 E-value=3.6e-14 Score=120.17 Aligned_cols=141 Identities=14% Similarity=0.044 Sum_probs=105.4
Q ss_pred cHHHHHHHHHhcc-CCCCCCeEEEecCCCCHHHHHHHHhCC-EEEEEcCCCcHHHHHHHHHHHHHcCCc--eEEEEeecC
Q 026274 54 CSVILAEYVWQQR-YRFSGANVVELGAGTSLPGLVAAKVGS-NVTLTDDSNRIEVLKNMRRVCEMNKLN--CRVMGLTWG 129 (241)
Q Consensus 54 ~s~~L~~~l~~~~-~~~~~~~VLElGcGtGl~sl~la~~g~-~V~~tD~~~~~~~l~~~~~n~~~n~~~--~~~~~l~w~ 129 (241)
........+.... ...++.+|||+|||+|..+..+++.+. +|+++|+++ .+++.+++++..+++. +++...++.
T Consensus 29 ~~~~~~~~~l~~l~~~~~~~~vLDiGcG~G~~~~~la~~~~~~v~gvD~s~--~~~~~a~~~~~~~~~~~~v~~~~~d~~ 106 (267)
T 3kkz_A 29 GSPEVTLKALSFIDNLTEKSLIADIGCGTGGQTMVLAGHVTGQVTGLDFLS--GFIDIFNRNARQSGLQNRVTGIVGSMD 106 (267)
T ss_dssp CCHHHHHHHHTTCCCCCTTCEEEEETCTTCHHHHHHHTTCSSEEEEEESCH--HHHHHHHHHHHHTTCTTTEEEEECCTT
T ss_pred CCHHHHHHHHHhcccCCCCCEEEEeCCCCCHHHHHHHhccCCEEEEEeCCH--HHHHHHHHHHHHcCCCcCcEEEEcChh
Confidence 3333444443332 345688999999999999999999865 999999995 7999999999888764 888888886
Q ss_pred CCCcCcCCCCCcEEEEcCCcCCCccHHHHHHHHHHHhhcCCCeEEEEEeec---cC-----------------chhHHHH
Q 026274 130 FLDASIFDLNPNIILGADVFYDASAFDDLFATITYLLQSSPGSVFITTYHN---RS-----------------GHHLIEF 189 (241)
Q Consensus 130 ~~~~~~~~~~fDlIl~~dvly~~~~~~~ll~~~~~lL~~~~~~~~~~~~~~---r~-----------------~~~~~~~ 189 (241)
+. +..+++||+|+++.++++. +...+++.+.++|+ |||.+++.... .. .......
T Consensus 107 ~~--~~~~~~fD~i~~~~~~~~~-~~~~~l~~~~~~Lk--pgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 181 (267)
T 3kkz_A 107 DL--PFRNEELDLIWSEGAIYNI-GFERGLNEWRKYLK--KGGYLAVSECSWFTDERPAEINDFWMDAYPEIDTIPNQVA 181 (267)
T ss_dssp SC--CCCTTCEEEEEESSCGGGT-CHHHHHHHHGGGEE--EEEEEEEEEEEESSSCCCHHHHHHHHHHCTTCEEHHHHHH
T ss_pred hC--CCCCCCEEEEEEcCCceec-CHHHHHHHHHHHcC--CCCEEEEEEeeecCCCChHHHHHHHHHhCCCCCCHHHHHH
Confidence 54 2335689999999999998 88999999999998 56665554321 10 1123344
Q ss_pred HHHHcCCEEEEE
Q 026274 190 LMVKWGLKCVKL 201 (241)
Q Consensus 190 ~~~~~g~~~~~i 201 (241)
++++.||+...+
T Consensus 182 ~l~~aGf~~v~~ 193 (267)
T 3kkz_A 182 KIHKAGYLPVAT 193 (267)
T ss_dssp HHHHTTEEEEEE
T ss_pred HHHHCCCEEEEE
Confidence 578899998877
|
| >2ex4_A Adrenal gland protein AD-003; methyltransferase, structural genomics, SGC, structural genomics consortium; HET: SAH; 1.75A {Homo sapiens} SCOP: c.66.1.42 | Back alignment and structure |
|---|
Probab=99.59 E-value=2.9e-14 Score=118.98 Aligned_cols=129 Identities=10% Similarity=0.016 Sum_probs=98.7
Q ss_pred CCCeEEEecCCCCHHHHHHHHhCC-EEEEEcCCCcHHHHHHHHHHHHHc-CCceEEEEeecCCCCcCcCCCCCcEEEEcC
Q 026274 70 SGANVVELGAGTSLPGLVAAKVGS-NVTLTDDSNRIEVLKNMRRVCEMN-KLNCRVMGLTWGFLDASIFDLNPNIILGAD 147 (241)
Q Consensus 70 ~~~~VLElGcGtGl~sl~la~~g~-~V~~tD~~~~~~~l~~~~~n~~~n-~~~~~~~~l~w~~~~~~~~~~~fDlIl~~d 147 (241)
++.+|||+|||+|..+..+++.+. +|+++|+++ .+++.+++++..+ ..++.+...++.+.. ..+++||+|++..
T Consensus 79 ~~~~vLDiGcG~G~~~~~l~~~~~~~v~~vD~s~--~~~~~a~~~~~~~~~~~~~~~~~d~~~~~--~~~~~fD~v~~~~ 154 (241)
T 2ex4_A 79 GTSCALDCGAGIGRITKRLLLPLFREVDMVDITE--DFLVQAKTYLGEEGKRVRNYFCCGLQDFT--PEPDSYDVIWIQW 154 (241)
T ss_dssp CCSEEEEETCTTTHHHHHTTTTTCSEEEEEESCH--HHHHHHHHHTGGGGGGEEEEEECCGGGCC--CCSSCEEEEEEES
T ss_pred CCCEEEEECCCCCHHHHHHHHhcCCEEEEEeCCH--HHHHHHHHHhhhcCCceEEEEEcChhhcC--CCCCCEEEEEEcc
Confidence 578999999999999999888754 999999995 6999999988766 345667777765432 2345899999999
Q ss_pred CcCCCcc--HHHHHHHHHHHhhcCCCeEEEEEeecc--------------CchhHHHHHHHHcCCEEEEEecC
Q 026274 148 VFYDASA--FDDLFATITYLLQSSPGSVFITTYHNR--------------SGHHLIEFLMVKWGLKCVKLVDG 204 (241)
Q Consensus 148 vly~~~~--~~~ll~~~~~lL~~~~~~~~~~~~~~r--------------~~~~~~~~~~~~~g~~~~~i~~~ 204 (241)
++++.++ ...+++.+.++|+ |||.+++..... .....+..++++.||+.......
T Consensus 155 ~l~~~~~~~~~~~l~~~~~~Lk--pgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aGf~~~~~~~~ 225 (241)
T 2ex4_A 155 VIGHLTDQHLAEFLRRCKGSLR--PNGIIVIKDNMAQEGVILDDVDSSVCRDLDVVRRIICSAGLSLLAEERQ 225 (241)
T ss_dssp CGGGSCHHHHHHHHHHHHHHEE--EEEEEEEEEEEBSSSEEEETTTTEEEEBHHHHHHHHHHTTCCEEEEEEC
T ss_pred hhhhCCHHHHHHHHHHHHHhcC--CCeEEEEEEccCCCcceecccCCcccCCHHHHHHHHHHcCCeEEEeeec
Confidence 9999876 5589999999998 566666532211 13445666788999999888443
|
| >4hc4_A Protein arginine N-methyltransferase 6; HRMT1L6, S-adenosyl-L-homocysteine, struc genomics, structural genomics consortium, SGC; HET: SAH; 1.97A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.58 E-value=6.7e-15 Score=131.44 Aligned_cols=106 Identities=19% Similarity=0.333 Sum_probs=86.2
Q ss_pred HHhccCCCCCCeEEEecCCCCHHHHHHHHhCC-EEEEEcCCCcHHHHHHHHHHHHHcCCc--eEEEEeecCCCCcCcCCC
Q 026274 62 VWQQRYRFSGANVVELGAGTSLPGLVAAKVGS-NVTLTDDSNRIEVLKNMRRVCEMNKLN--CRVMGLTWGFLDASIFDL 138 (241)
Q Consensus 62 l~~~~~~~~~~~VLElGcGtGl~sl~la~~g~-~V~~tD~~~~~~~l~~~~~n~~~n~~~--~~~~~l~w~~~~~~~~~~ 138 (241)
|.++...++|++|||||||||++|+++|+.|| +|+++|.++ +++.++++++.|+.. +++...+..+.. .++
T Consensus 75 i~~~~~~~~~k~VLDvG~GtGiLs~~Aa~aGA~~V~ave~s~---~~~~a~~~~~~n~~~~~i~~i~~~~~~~~---lpe 148 (376)
T 4hc4_A 75 ILRNWAALRGKTVLDVGAGTGILSIFCAQAGARRVYAVEASA---IWQQAREVVRFNGLEDRVHVLPGPVETVE---LPE 148 (376)
T ss_dssp HHTTHHHHTTCEEEEETCTTSHHHHHHHHTTCSEEEEEECST---THHHHHHHHHHTTCTTTEEEEESCTTTCC---CSS
T ss_pred HHhCHHhcCCCEEEEeCCCccHHHHHHHHhCCCEEEEEeChH---HHHHHHHHHHHcCCCceEEEEeeeeeeec---CCc
Confidence 44555667999999999999999999999998 799999995 889999999999874 666666655442 346
Q ss_pred CCcEEEE---cCCcCCCccHHHHHHHHHHHhhcCCCeEEE
Q 026274 139 NPNIILG---ADVFYDASAFDDLFATITYLLQSSPGSVFI 175 (241)
Q Consensus 139 ~fDlIl~---~dvly~~~~~~~ll~~~~~lL~~~~~~~~~ 175 (241)
++|+|++ ...+.+...++.++....++|+ |+|+++
T Consensus 149 ~~DvivsE~~~~~l~~e~~l~~~l~a~~r~Lk--p~G~~i 186 (376)
T 4hc4_A 149 QVDAIVSEWMGYGLLHESMLSSVLHARTKWLK--EGGLLL 186 (376)
T ss_dssp CEEEEECCCCBTTBTTTCSHHHHHHHHHHHEE--EEEEEE
T ss_pred cccEEEeecccccccccchhhhHHHHHHhhCC--CCceEC
Confidence 8999997 5566778899999999999999 455443
|
| >3ofk_A Nodulation protein S; NODS, N-methyltransferase, SAH, SAM, NOD factor, fixation, symbiosis, alpha/beta structure; HET: SAH; 1.85A {Bradyrhizobium SP} PDB: 3ofj_A* | Back alignment and structure |
|---|
Probab=99.58 E-value=8.6e-15 Score=119.93 Aligned_cols=120 Identities=11% Similarity=-0.016 Sum_probs=95.3
Q ss_pred EeccHHHHHHHHHhccCCCCCCeEEEecCCCCHHHHHHHHhCCEEEEEcCCCcHHHHHHHHHHHHHcCCceEEEEeecCC
Q 026274 51 VWPCSVILAEYVWQQRYRFSGANVVELGAGTSLPGLVAAKVGSNVTLTDDSNRIEVLKNMRRVCEMNKLNCRVMGLTWGF 130 (241)
Q Consensus 51 ~W~~s~~L~~~l~~~~~~~~~~~VLElGcGtGl~sl~la~~g~~V~~tD~~~~~~~l~~~~~n~~~n~~~~~~~~l~w~~ 130 (241)
.|-....+..++.......++.+|||+|||+|..+..+++.+.+|+++|+++ ++++.++++...++ ++++...++.+
T Consensus 32 ~~~~~~~~~~~l~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~~~v~~vD~s~--~~~~~a~~~~~~~~-~~~~~~~d~~~ 108 (216)
T 3ofk_A 32 NPFERERHTQLLRLSLSSGAVSNGLEIGCAAGAFTEKLAPHCKRLTVIDVMP--RAIGRACQRTKRWS-HISWAATDILQ 108 (216)
T ss_dssp CHHHHHHHHHHHHHHTTTSSEEEEEEECCTTSHHHHHHGGGEEEEEEEESCH--HHHHHHHHHTTTCS-SEEEEECCTTT
T ss_pred CHhHHHHHHHHHHHHcccCCCCcEEEEcCCCCHHHHHHHHcCCEEEEEECCH--HHHHHHHHhcccCC-CeEEEEcchhh
Confidence 3444445666666544555678999999999999999999999999999995 69999999887654 67888877766
Q ss_pred CCcCcCCCCCcEEEEcCCcCCCccH---HHHHHHHHHHhhcCCCeEEEEEe
Q 026274 131 LDASIFDLNPNIILGADVFYDASAF---DDLFATITYLLQSSPGSVFITTY 178 (241)
Q Consensus 131 ~~~~~~~~~fDlIl~~dvly~~~~~---~~ll~~~~~lL~~~~~~~~~~~~ 178 (241)
.. .+.+||+|+++.+++|..+. ..+++.+.++|+ |||.+++..
T Consensus 109 ~~---~~~~fD~v~~~~~l~~~~~~~~~~~~l~~~~~~L~--pgG~l~~~~ 154 (216)
T 3ofk_A 109 FS---TAELFDLIVVAEVLYYLEDMTQMRTAIDNMVKMLA--PGGHLVFGS 154 (216)
T ss_dssp CC---CSCCEEEEEEESCGGGSSSHHHHHHHHHHHHHTEE--EEEEEEEEE
T ss_pred CC---CCCCccEEEEccHHHhCCCHHHHHHHHHHHHHHcC--CCCEEEEEe
Confidence 53 35689999999999998876 566999999998 667777653
|
| >3hnr_A Probable methyltransferase BT9727_4108; structural genomics, PSI-2, protein structure initiative; 2.80A {Bacillus thuringiensis serovarkonkukian} | Back alignment and structure |
|---|
Probab=99.58 E-value=1.9e-14 Score=118.07 Aligned_cols=98 Identities=17% Similarity=0.120 Sum_probs=80.6
Q ss_pred CCCeEEEecCCCCHHHHHHHHhCCEEEEEcCCCcHHHHHHHHHHHHHcCCceEEEEeecCCCCcCcCCCCCcEEEEcCCc
Q 026274 70 SGANVVELGAGTSLPGLVAAKVGSNVTLTDDSNRIEVLKNMRRVCEMNKLNCRVMGLTWGFLDASIFDLNPNIILGADVF 149 (241)
Q Consensus 70 ~~~~VLElGcGtGl~sl~la~~g~~V~~tD~~~~~~~l~~~~~n~~~n~~~~~~~~l~w~~~~~~~~~~~fDlIl~~dvl 149 (241)
++.+|||+|||+|..+..+++.+++|+++|+++ ++++.++++.. .++++...++.+... . ++||+|+++.++
T Consensus 45 ~~~~vLDiGcG~G~~~~~l~~~~~~v~~vD~s~--~~~~~a~~~~~---~~~~~~~~d~~~~~~--~-~~fD~v~~~~~l 116 (220)
T 3hnr_A 45 SFGNVLEFGVGTGNLTNKLLLAGRTVYGIEPSR--EMRMIAKEKLP---KEFSITEGDFLSFEV--P-TSIDTIVSTYAF 116 (220)
T ss_dssp CCSEEEEECCTTSHHHHHHHHTTCEEEEECSCH--HHHHHHHHHSC---TTCCEESCCSSSCCC--C-SCCSEEEEESCG
T ss_pred CCCeEEEeCCCCCHHHHHHHhCCCeEEEEeCCH--HHHHHHHHhCC---CceEEEeCChhhcCC--C-CCeEEEEECcch
Confidence 667999999999999999999999999999995 69998888765 345666666655422 2 689999999999
Q ss_pred CCCccHHH--HHHHHHHHhhcCCCeEEEEE
Q 026274 150 YDASAFDD--LFATITYLLQSSPGSVFITT 177 (241)
Q Consensus 150 y~~~~~~~--ll~~~~~lL~~~~~~~~~~~ 177 (241)
++.++... +++.+.++|+ |||.+++.
T Consensus 117 ~~~~~~~~~~~l~~~~~~Lk--pgG~l~i~ 144 (220)
T 3hnr_A 117 HHLTDDEKNVAIAKYSQLLN--KGGKIVFA 144 (220)
T ss_dssp GGSCHHHHHHHHHHHHHHSC--TTCEEEEE
T ss_pred hcCChHHHHHHHHHHHHhcC--CCCEEEEE
Confidence 99888877 9999999998 56666655
|
| >1dus_A MJ0882; hypothetical protein, methanococcus jannaschii, structural genomics, BSGC structure funded by NIH; 1.80A {Methanocaldococcus jannaschii} SCOP: c.66.1.4 | Back alignment and structure |
|---|
Probab=99.58 E-value=3.7e-14 Score=113.28 Aligned_cols=110 Identities=16% Similarity=0.183 Sum_probs=89.1
Q ss_pred CCCCeEEEecCCCCHHHHHHHHhCCEEEEEcCCCcHHHHHHHHHHHHHcCCc---eEEEEeecCCCCcCcCCCCCcEEEE
Q 026274 69 FSGANVVELGAGTSLPGLVAAKVGSNVTLTDDSNRIEVLKNMRRVCEMNKLN---CRVMGLTWGFLDASIFDLNPNIILG 145 (241)
Q Consensus 69 ~~~~~VLElGcGtGl~sl~la~~g~~V~~tD~~~~~~~l~~~~~n~~~n~~~---~~~~~l~w~~~~~~~~~~~fDlIl~ 145 (241)
.++.+|||+|||+|..+..+++.+.+|+++|+++ ++++.+++++..++.. +++...++.+.. .+.+||+|++
T Consensus 51 ~~~~~vLdiG~G~G~~~~~~~~~~~~v~~~D~~~--~~~~~a~~~~~~~~~~~~~~~~~~~d~~~~~---~~~~~D~v~~ 125 (194)
T 1dus_A 51 DKDDDILDLGCGYGVIGIALADEVKSTTMADINR--RAIKLAKENIKLNNLDNYDIRVVHSDLYENV---KDRKYNKIIT 125 (194)
T ss_dssp CTTCEEEEETCTTSHHHHHHGGGSSEEEEEESCH--HHHHHHHHHHHHTTCTTSCEEEEECSTTTTC---TTSCEEEEEE
T ss_pred CCCCeEEEeCCCCCHHHHHHHHcCCeEEEEECCH--HHHHHHHHHHHHcCCCccceEEEECchhccc---ccCCceEEEE
Confidence 4678999999999999999999988999999995 7999999999888764 778777776532 2458999999
Q ss_pred cCCcCC-CccHHHHHHHHHHHhhcCCCeEEEEEeeccCchh
Q 026274 146 ADVFYD-ASAFDDLFATITYLLQSSPGSVFITTYHNRSGHH 185 (241)
Q Consensus 146 ~dvly~-~~~~~~ll~~~~~lL~~~~~~~~~~~~~~r~~~~ 185 (241)
+.++++ ......+++.+.++|+ ++|.+++....+....
T Consensus 126 ~~~~~~~~~~~~~~l~~~~~~L~--~gG~l~~~~~~~~~~~ 164 (194)
T 1dus_A 126 NPPIRAGKEVLHRIIEEGKELLK--DNGEIWVVIQTKQGAK 164 (194)
T ss_dssp CCCSTTCHHHHHHHHHHHHHHEE--EEEEEEEEEESTHHHH
T ss_pred CCCcccchhHHHHHHHHHHHHcC--CCCEEEEEECCCCChH
Confidence 887776 4677899999999998 6677776655544433
|
| >1pjz_A Thiopurine S-methyltransferase; polymorphism, S-adenosylmethionine, drug metabolism; NMR {Pseudomonas syringae PV} SCOP: c.66.1.36 | Back alignment and structure |
|---|
Probab=99.57 E-value=1.3e-14 Score=118.69 Aligned_cols=137 Identities=12% Similarity=0.015 Sum_probs=96.5
Q ss_pred HHHHHHHhccCCCCCCeEEEecCCCCHHHHHHHHhCCEEEEEcCCCcHHHHHHHHHHHHH-------------cCCceEE
Q 026274 57 ILAEYVWQQRYRFSGANVVELGAGTSLPGLVAAKVGSNVTLTDDSNRIEVLKNMRRVCEM-------------NKLNCRV 123 (241)
Q Consensus 57 ~L~~~l~~~~~~~~~~~VLElGcGtGl~sl~la~~g~~V~~tD~~~~~~~l~~~~~n~~~-------------n~~~~~~ 123 (241)
.+.+|+... ...++.+|||+|||+|..+..+++.|++|+++|+|+ +|++.++++... ...++++
T Consensus 10 ~l~~~~~~l-~~~~~~~vLD~GCG~G~~~~~la~~g~~V~gvD~S~--~~l~~a~~~~~~~~~~~~~~~~~~~~~~~v~~ 86 (203)
T 1pjz_A 10 DLQQYWSSL-NVVPGARVLVPLCGKSQDMSWLSGQGYHVVGAELSE--AAVERYFTERGEQPHITSQGDFKVYAAPGIEI 86 (203)
T ss_dssp HHHHHHHHH-CCCTTCEEEETTTCCSHHHHHHHHHCCEEEEEEECH--HHHHHHHHHHCSCSEEEEETTEEEEECSSSEE
T ss_pred HHHHHHHhc-ccCCCCEEEEeCCCCcHhHHHHHHCCCeEEEEeCCH--HHHHHHHHHccCCcccccccccccccCCccEE
Confidence 455665442 233678999999999999999999999999999995 799999887653 2346777
Q ss_pred EEeecCCCCcCcCC-CCCcEEEEcCCcCCCc--cHHHHHHHHHHHhhcCCCeE-EEEEeecc----------CchhHHHH
Q 026274 124 MGLTWGFLDASIFD-LNPNIILGADVFYDAS--AFDDLFATITYLLQSSPGSV-FITTYHNR----------SGHHLIEF 189 (241)
Q Consensus 124 ~~l~w~~~~~~~~~-~~fDlIl~~dvly~~~--~~~~ll~~~~~lL~~~~~~~-~~~~~~~r----------~~~~~~~~ 189 (241)
...|..+.. ..+ ++||+|++..++++.+ ....+++.+.++|+ |||. +++..... .....+..
T Consensus 87 ~~~d~~~l~--~~~~~~fD~v~~~~~l~~l~~~~~~~~l~~~~r~Lk--pgG~~~l~~~~~~~~~~~~~~~~~~~~el~~ 162 (203)
T 1pjz_A 87 WCGDFFALT--ARDIGHCAAFYDRAAMIALPADMRERYVQHLEALMP--QACSGLLITLEYDQALLEGPPFSVPQTWLHR 162 (203)
T ss_dssp EEECCSSST--HHHHHSEEEEEEESCGGGSCHHHHHHHHHHHHHHSC--SEEEEEEEEESSCSSSSSSCCCCCCHHHHHH
T ss_pred EECccccCC--cccCCCEEEEEECcchhhCCHHHHHHHHHHHHHHcC--CCcEEEEEEEecCccccCCCCCCCCHHHHHH
Confidence 777766542 122 5899999998887754 45568999999998 5664 44432211 12233344
Q ss_pred HHHHcCCEEEEE
Q 026274 190 LMVKWGLKCVKL 201 (241)
Q Consensus 190 ~~~~~g~~~~~i 201 (241)
+++. ||++..+
T Consensus 163 ~~~~-gf~i~~~ 173 (203)
T 1pjz_A 163 VMSG-NWEVTKV 173 (203)
T ss_dssp TSCS-SEEEEEE
T ss_pred HhcC-CcEEEEe
Confidence 4455 8988776
|
| >3gu3_A Methyltransferase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium, NESG; HET: SAH; 2.30A {Bacillus cereus} SCOP: c.66.1.49 PDB: 2gh1_A | Back alignment and structure |
|---|
Probab=99.57 E-value=6.4e-14 Score=120.06 Aligned_cols=105 Identities=14% Similarity=0.203 Sum_probs=89.3
Q ss_pred cCCCCCCeEEEecCCCCHHHHHHHHh---CCEEEEEcCCCcHHHHHHHHHHHHHcCCceEEEEeecCCCCcCcCCCCCcE
Q 026274 66 RYRFSGANVVELGAGTSLPGLVAAKV---GSNVTLTDDSNRIEVLKNMRRVCEMNKLNCRVMGLTWGFLDASIFDLNPNI 142 (241)
Q Consensus 66 ~~~~~~~~VLElGcGtGl~sl~la~~---g~~V~~tD~~~~~~~l~~~~~n~~~n~~~~~~~~l~w~~~~~~~~~~~fDl 142 (241)
....++.+|||+|||+|..+..+++. +++|+++|+++ .+++.+++++...+.++++...|..+.. .+.+||+
T Consensus 18 ~~~~~~~~vLDiGcG~G~~~~~l~~~~~~~~~v~gvD~s~--~~~~~a~~~~~~~~~~v~~~~~d~~~~~---~~~~fD~ 92 (284)
T 3gu3_A 18 WKITKPVHIVDYGCGYGYLGLVLMPLLPEGSKYTGIDSGE--TLLAEARELFRLLPYDSEFLEGDATEIE---LNDKYDI 92 (284)
T ss_dssp SCCCSCCEEEEETCTTTHHHHHHTTTSCTTCEEEEEESCH--HHHHHHHHHHHSSSSEEEEEESCTTTCC---CSSCEEE
T ss_pred hccCCCCeEEEecCCCCHHHHHHHHhCCCCCEEEEEECCH--HHHHHHHHHHHhcCCceEEEEcchhhcC---cCCCeeE
Confidence 34457889999999999999999987 57999999995 6999999999888878888888777542 2458999
Q ss_pred EEEcCCcCCCccHHHHHHHHHHHhhcCCCeEEEEE
Q 026274 143 ILGADVFYDASAFDDLFATITYLLQSSPGSVFITT 177 (241)
Q Consensus 143 Il~~dvly~~~~~~~ll~~~~~lL~~~~~~~~~~~ 177 (241)
|++..++++.++...+++.+.++|+ |||.+++.
T Consensus 93 v~~~~~l~~~~~~~~~l~~~~~~Lk--pgG~l~~~ 125 (284)
T 3gu3_A 93 AICHAFLLHMTTPETMLQKMIHSVK--KGGKIICF 125 (284)
T ss_dssp EEEESCGGGCSSHHHHHHHHHHTEE--EEEEEEEE
T ss_pred EEECChhhcCCCHHHHHHHHHHHcC--CCCEEEEE
Confidence 9999999999999999999999998 56665544
|
| >3dtn_A Putative methyltransferase MM_2633; structural genomics, unknown function, PSI-2, protein structure initiative; 2.09A {Methanosarcina mazei} | Back alignment and structure |
|---|
Probab=99.57 E-value=7.1e-14 Score=115.80 Aligned_cols=102 Identities=19% Similarity=0.277 Sum_probs=84.1
Q ss_pred CCCCCeEEEecCCCCHHHHHHHHh--CCEEEEEcCCCcHHHHHHHHHHHHHcCCceEEEEeecCCCCcCcCCCCCcEEEE
Q 026274 68 RFSGANVVELGAGTSLPGLVAAKV--GSNVTLTDDSNRIEVLKNMRRVCEMNKLNCRVMGLTWGFLDASIFDLNPNIILG 145 (241)
Q Consensus 68 ~~~~~~VLElGcGtGl~sl~la~~--g~~V~~tD~~~~~~~l~~~~~n~~~n~~~~~~~~l~w~~~~~~~~~~~fDlIl~ 145 (241)
..++.+|||+|||+|..+..+++. +.+|+++|+++ .+++.+++++..++ ++.+...+..+... ..+||+|++
T Consensus 42 ~~~~~~vLDiG~G~G~~~~~l~~~~~~~~v~~vD~s~--~~~~~a~~~~~~~~-~~~~~~~d~~~~~~---~~~fD~v~~ 115 (234)
T 3dtn_A 42 DTENPDILDLGAGTGLLSAFLMEKYPEATFTLVDMSE--KMLEIAKNRFRGNL-KVKYIEADYSKYDF---EEKYDMVVS 115 (234)
T ss_dssp SCSSCEEEEETCTTSHHHHHHHHHCTTCEEEEEESCH--HHHHHHHHHTCSCT-TEEEEESCTTTCCC---CSCEEEEEE
T ss_pred CCCCCeEEEecCCCCHHHHHHHHhCCCCeEEEEECCH--HHHHHHHHhhccCC-CEEEEeCchhccCC---CCCceEEEE
Confidence 446789999999999999999998 67999999995 69999999887666 77787777765432 268999999
Q ss_pred cCCcCCCccHH--HHHHHHHHHhhcCCCeEEEEE
Q 026274 146 ADVFYDASAFD--DLFATITYLLQSSPGSVFITT 177 (241)
Q Consensus 146 ~dvly~~~~~~--~ll~~~~~lL~~~~~~~~~~~ 177 (241)
+.++++.++.. .+++.+.++|+ |||.+++.
T Consensus 116 ~~~l~~~~~~~~~~~l~~~~~~Lk--pgG~l~~~ 147 (234)
T 3dtn_A 116 ALSIHHLEDEDKKELYKRSYSILK--ESGIFINA 147 (234)
T ss_dssp ESCGGGSCHHHHHHHHHHHHHHEE--EEEEEEEE
T ss_pred eCccccCCHHHHHHHHHHHHHhcC--CCcEEEEE
Confidence 99999987655 59999999998 56666654
|
| >3ou2_A SAM-dependent methyltransferase; O-methyltransferase, SAH; HET: SAH; 1.50A {Streptomyces luridus} PDB: 3ou6_A* 3ou7_A* | Back alignment and structure |
|---|
Probab=99.57 E-value=6.7e-14 Score=114.22 Aligned_cols=99 Identities=18% Similarity=0.153 Sum_probs=81.2
Q ss_pred CCCCCeEEEecCCCCHHHHHHHHhCCEEEEEcCCCcHHHHHHHHHHHHHcC-CceEEEEeecCCCCcCcCCCCCcEEEEc
Q 026274 68 RFSGANVVELGAGTSLPGLVAAKVGSNVTLTDDSNRIEVLKNMRRVCEMNK-LNCRVMGLTWGFLDASIFDLNPNIILGA 146 (241)
Q Consensus 68 ~~~~~~VLElGcGtGl~sl~la~~g~~V~~tD~~~~~~~l~~~~~n~~~n~-~~~~~~~l~w~~~~~~~~~~~fDlIl~~ 146 (241)
..++.+|||+|||+|..+..+++.|++|+++|+++ .+++.+++ ++ .++++...+..+. ..+.+||+|+++
T Consensus 44 ~~~~~~vLdiG~G~G~~~~~l~~~~~~v~~~D~s~--~~~~~a~~----~~~~~~~~~~~d~~~~---~~~~~~D~v~~~ 114 (218)
T 3ou2_A 44 GNIRGDVLELASGTGYWTRHLSGLADRVTALDGSA--EMIAEAGR----HGLDNVEFRQQDLFDW---TPDRQWDAVFFA 114 (218)
T ss_dssp TTSCSEEEEESCTTSHHHHHHHHHSSEEEEEESCH--HHHHHHGG----GCCTTEEEEECCTTSC---CCSSCEEEEEEE
T ss_pred CCCCCeEEEECCCCCHHHHHHHhcCCeEEEEeCCH--HHHHHHHh----cCCCCeEEEecccccC---CCCCceeEEEEe
Confidence 44567999999999999999999999999999995 68888877 34 5677777777654 345689999999
Q ss_pred CCcCCCcc--HHHHHHHHHHHhhcCCCeEEEEE
Q 026274 147 DVFYDASA--FDDLFATITYLLQSSPGSVFITT 177 (241)
Q Consensus 147 dvly~~~~--~~~ll~~~~~lL~~~~~~~~~~~ 177 (241)
.++++.++ ...+++.+.++|+ |||.+++.
T Consensus 115 ~~l~~~~~~~~~~~l~~~~~~L~--pgG~l~~~ 145 (218)
T 3ou2_A 115 HWLAHVPDDRFEAFWESVRSAVA--PGGVVEFV 145 (218)
T ss_dssp SCGGGSCHHHHHHHHHHHHHHEE--EEEEEEEE
T ss_pred chhhcCCHHHHHHHHHHHHHHcC--CCeEEEEE
Confidence 99999877 4899999999998 56665554
|
| >3bkw_A MLL3908 protein, S-adenosylmethionine dependent methyltransferase; NP_104914.1; HET: MSE; 1.60A {Mesorhizobium loti} | Back alignment and structure |
|---|
Probab=99.57 E-value=3.3e-14 Score=118.10 Aligned_cols=102 Identities=20% Similarity=0.188 Sum_probs=83.5
Q ss_pred CCCCCeEEEecCCCCHHHHHHHHhCC-EEEEEcCCCcHHHHHHHHHHHHHcCCceEEEEeecCCCCcCcCCCCCcEEEEc
Q 026274 68 RFSGANVVELGAGTSLPGLVAAKVGS-NVTLTDDSNRIEVLKNMRRVCEMNKLNCRVMGLTWGFLDASIFDLNPNIILGA 146 (241)
Q Consensus 68 ~~~~~~VLElGcGtGl~sl~la~~g~-~V~~tD~~~~~~~l~~~~~n~~~n~~~~~~~~l~w~~~~~~~~~~~fDlIl~~ 146 (241)
..++.+|||+|||+|..+..+++.|. +|+++|+++ ++++.++++...+ ++.+...+..+. +..+.+||+|+++
T Consensus 41 ~~~~~~vLdiG~G~G~~~~~l~~~~~~~v~~vD~s~--~~~~~a~~~~~~~--~~~~~~~d~~~~--~~~~~~fD~v~~~ 114 (243)
T 3bkw_A 41 EVGGLRIVDLGCGFGWFCRWAHEHGASYVLGLDLSE--KMLARARAAGPDT--GITYERADLDKL--HLPQDSFDLAYSS 114 (243)
T ss_dssp CCTTCEEEEETCTTCHHHHHHHHTTCSEEEEEESCH--HHHHHHHHTSCSS--SEEEEECCGGGC--CCCTTCEEEEEEE
T ss_pred ccCCCEEEEEcCcCCHHHHHHHHCCCCeEEEEcCCH--HHHHHHHHhcccC--CceEEEcChhhc--cCCCCCceEEEEe
Confidence 34678999999999999999999998 999999995 6999888876543 466666666543 2335689999999
Q ss_pred CCcCCCccHHHHHHHHHHHhhcCCCeEEEEE
Q 026274 147 DVFYDASAFDDLFATITYLLQSSPGSVFITT 177 (241)
Q Consensus 147 dvly~~~~~~~ll~~~~~lL~~~~~~~~~~~ 177 (241)
.++++.++...+++.+.++|+ |||.+++.
T Consensus 115 ~~l~~~~~~~~~l~~~~~~L~--pgG~l~~~ 143 (243)
T 3bkw_A 115 LALHYVEDVARLFRTVHQALS--PGGHFVFS 143 (243)
T ss_dssp SCGGGCSCHHHHHHHHHHHEE--EEEEEEEE
T ss_pred ccccccchHHHHHHHHHHhcC--cCcEEEEE
Confidence 999999999999999999998 56666654
|
| >3dli_A Methyltransferase; PSI-II, NYSGXRC, structural genomics, protein structure initiative; 2.46A {Archaeoglobus fulgidus} | Back alignment and structure |
|---|
Probab=99.57 E-value=2.2e-14 Score=119.72 Aligned_cols=122 Identities=13% Similarity=0.072 Sum_probs=91.9
Q ss_pred CCCCeEEEecCCCCHHHHHHHHhCCEEEEEcCCCcHHHHHHHHHHHHHcCCceEEEEeecCCCCcCcCCCCCcEEEEcCC
Q 026274 69 FSGANVVELGAGTSLPGLVAAKVGSNVTLTDDSNRIEVLKNMRRVCEMNKLNCRVMGLTWGFLDASIFDLNPNIILGADV 148 (241)
Q Consensus 69 ~~~~~VLElGcGtGl~sl~la~~g~~V~~tD~~~~~~~l~~~~~n~~~n~~~~~~~~l~w~~~~~~~~~~~fDlIl~~dv 148 (241)
.++.+|||+|||+|..+..+++.|++|+++|+++ ++++.++++ +.+...+..+...+..+++||+|++..+
T Consensus 40 ~~~~~vLDiGcG~G~~~~~l~~~~~~v~gvD~s~--~~~~~a~~~-------~~~~~~d~~~~~~~~~~~~fD~i~~~~~ 110 (240)
T 3dli_A 40 KGCRRVLDIGCGRGEFLELCKEEGIESIGVDINE--DMIKFCEGK-------FNVVKSDAIEYLKSLPDKYLDGVMISHF 110 (240)
T ss_dssp TTCSCEEEETCTTTHHHHHHHHHTCCEEEECSCH--HHHHHHHTT-------SEEECSCHHHHHHTSCTTCBSEEEEESC
T ss_pred cCCCeEEEEeCCCCHHHHHHHhCCCcEEEEECCH--HHHHHHHhh-------cceeeccHHHHhhhcCCCCeeEEEECCc
Confidence 4568999999999999999999999999999995 688887775 4455444433222334578999999999
Q ss_pred cCCCc--cHHHHHHHHHHHhhcCCCeEEEEEeecc------------------CchhHHHHHHHHcCCEEEEE
Q 026274 149 FYDAS--AFDDLFATITYLLQSSPGSVFITTYHNR------------------SGHHLIEFLMVKWGLKCVKL 201 (241)
Q Consensus 149 ly~~~--~~~~ll~~~~~lL~~~~~~~~~~~~~~r------------------~~~~~~~~~~~~~g~~~~~i 201 (241)
+++.. +...+++.+.++|+ |||.+++..... .....+..++++.||+...+
T Consensus 111 l~~~~~~~~~~~l~~~~~~Lk--pgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~aGf~~~~~ 181 (240)
T 3dli_A 111 VEHLDPERLFELLSLCYSKMK--YSSYIVIESPNPTSLYSLINFYIDPTHKKPVHPETLKFILEYLGFRDVKI 181 (240)
T ss_dssp GGGSCGGGHHHHHHHHHHHBC--TTCCEEEEEECTTSHHHHHHHTTSTTCCSCCCHHHHHHHHHHHTCEEEEE
T ss_pred hhhCCcHHHHHHHHHHHHHcC--CCcEEEEEeCCcchhHHHHHHhcCccccccCCHHHHHHHHHHCCCeEEEE
Confidence 99987 56999999999998 455555443221 12234556778999998877
|
| >3cgg_A SAM-dependent methyltransferase; NP_600671.1, methyltransferase domain, structural genomics; HET: NHE CIT; 2.00A {Corynebacterium glutamicum atcc 13032} | Back alignment and structure |
|---|
Probab=99.57 E-value=7.5e-14 Score=111.57 Aligned_cols=130 Identities=16% Similarity=0.150 Sum_probs=100.1
Q ss_pred CCCeEEEecCCCCHHHHHHHHhCCEEEEEcCCCcHHHHHHHHHHHHHcCCceEEEEeecCCCCcCcCCCCCcEEEEc-CC
Q 026274 70 SGANVVELGAGTSLPGLVAAKVGSNVTLTDDSNRIEVLKNMRRVCEMNKLNCRVMGLTWGFLDASIFDLNPNIILGA-DV 148 (241)
Q Consensus 70 ~~~~VLElGcGtGl~sl~la~~g~~V~~tD~~~~~~~l~~~~~n~~~n~~~~~~~~l~w~~~~~~~~~~~fDlIl~~-dv 148 (241)
++.+|||+|||+|..+..+++.+.+|+++|+++ .+++.++++.. ++.+...++.+. +..+.+||+|+++ ++
T Consensus 46 ~~~~vLdiG~G~G~~~~~l~~~~~~v~~~D~~~--~~~~~a~~~~~----~~~~~~~d~~~~--~~~~~~~D~i~~~~~~ 117 (195)
T 3cgg_A 46 RGAKILDAGCGQGRIGGYLSKQGHDVLGTDLDP--ILIDYAKQDFP----EARWVVGDLSVD--QISETDFDLIVSAGNV 117 (195)
T ss_dssp TTCEEEEETCTTTHHHHHHHHTTCEEEEEESCH--HHHHHHHHHCT----TSEEEECCTTTS--CCCCCCEEEEEECCCC
T ss_pred CCCeEEEECCCCCHHHHHHHHCCCcEEEEcCCH--HHHHHHHHhCC----CCcEEEcccccC--CCCCCceeEEEECCcH
Confidence 678999999999999999999999999999995 68988887653 356666666553 2334689999998 77
Q ss_pred cCCC--ccHHHHHHHHHHHhhcCCCeEEEEEeeccC--chhHHHHHHHHcCCEEEEEecCCCCCC
Q 026274 149 FYDA--SAFDDLFATITYLLQSSPGSVFITTYHNRS--GHHLIEFLMVKWGLKCVKLVDGFSFLP 209 (241)
Q Consensus 149 ly~~--~~~~~ll~~~~~lL~~~~~~~~~~~~~~r~--~~~~~~~~~~~~g~~~~~i~~~~~~~p 209 (241)
+++. +....+++.+.++|+ ++|.+++...... ....+..++++.||++..+...+...|
T Consensus 118 ~~~~~~~~~~~~l~~~~~~l~--~~G~l~~~~~~~~~~~~~~~~~~l~~~Gf~~~~~~~~~~~~~ 180 (195)
T 3cgg_A 118 MGFLAEDGREPALANIHRALG--ADGRAVIGFGAGRGWVFGDFLEVAERVGLELENAFESWDLKP 180 (195)
T ss_dssp GGGSCHHHHHHHHHHHHHHEE--EEEEEEEEEETTSSCCHHHHHHHHHHHTEEEEEEESSTTCCB
T ss_pred HhhcChHHHHHHHHHHHHHhC--CCCEEEEEeCCCCCcCHHHHHHHHHHcCCEEeeeecccccCc
Confidence 7765 556889999999998 6677776655443 344556677899999999866655443
|
| >1yzh_A TRNA (guanine-N(7)-)-methyltransferase; alpha-beta-alpha sandwich, S-adenosylmeth dependent, structural genomics, PSI; 2.02A {Streptococcus pneumoniae} SCOP: c.66.1.53 | Back alignment and structure |
|---|
Probab=99.57 E-value=1.1e-13 Score=113.59 Aligned_cols=130 Identities=15% Similarity=-0.001 Sum_probs=96.9
Q ss_pred CCCeEEEecCCCCHHHHHHHHh--CCEEEEEcCCCcHHHHHHHHHHHHHcCC-ceEEEEeecCCCCcCcCCCCCcEEEEc
Q 026274 70 SGANVVELGAGTSLPGLVAAKV--GSNVTLTDDSNRIEVLKNMRRVCEMNKL-NCRVMGLTWGFLDASIFDLNPNIILGA 146 (241)
Q Consensus 70 ~~~~VLElGcGtGl~sl~la~~--g~~V~~tD~~~~~~~l~~~~~n~~~n~~-~~~~~~l~w~~~~~~~~~~~fDlIl~~ 146 (241)
.+.+|||||||+|..++.+++. +.+|+++|+++ ++++.+++|+..+++ ++.+...++.+......+.+||+|+++
T Consensus 41 ~~~~vLDiGcG~G~~~~~la~~~p~~~v~gvD~s~--~~l~~a~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~D~i~~~ 118 (214)
T 1yzh_A 41 DNPIHVEVGSGKGAFVSGMAKQNPDINYIGIDIQK--SVLSYALDKVLEVGVPNIKLLWVDGSDLTDYFEDGEIDRLYLN 118 (214)
T ss_dssp CCCEEEEESCTTSHHHHHHHHHCTTSEEEEEESCH--HHHHHHHHHHHHHCCSSEEEEECCSSCGGGTSCTTCCSEEEEE
T ss_pred CCCeEEEEccCcCHHHHHHHHHCCCCCEEEEEcCH--HHHHHHHHHHHHcCCCCEEEEeCCHHHHHhhcCCCCCCEEEEE
Confidence 4678999999999999999997 46999999995 799999999998886 678888887663222335689999988
Q ss_pred CCcCCCc--------cHHHHHHHHHHHhhcCCCeEEEEEeeccCchhHHHHHHHHcCCEEEEEec
Q 026274 147 DVFYDAS--------AFDDLFATITYLLQSSPGSVFITTYHNRSGHHLIEFLMVKWGLKCVKLVD 203 (241)
Q Consensus 147 dvly~~~--------~~~~ll~~~~~lL~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~i~~ 203 (241)
.+..+.. ....+++.+.++|+ +||.+++..............+.+.||....+..
T Consensus 119 ~~~~~~~~~~~~~~~~~~~~l~~~~~~Lk--pgG~l~~~~~~~~~~~~~~~~~~~~g~~~~~~~~ 181 (214)
T 1yzh_A 119 FSDPWPKKRHEKRRLTYKTFLDTFKRILP--ENGEIHFKTDNRGLFEYSLVSFSQYGMKLNGVWL 181 (214)
T ss_dssp SCCCCCSGGGGGGSTTSHHHHHHHHHHSC--TTCEEEEEESCHHHHHHHHHHHHHHTCEEEEEES
T ss_pred CCCCccccchhhhccCCHHHHHHHHHHcC--CCcEEEEEeCCHHHHHHHHHHHHHCCCeeeeccc
Confidence 5543222 34689999999998 6677777654433333334456778999888743
|
| >4dzr_A Protein-(glutamine-N5) methyltransferase, release specific; structural genomics, PSI-biology; 2.55A {Alicyclobacillus acidocaldarius subsp} | Back alignment and structure |
|---|
Probab=99.57 E-value=1.9e-15 Score=122.98 Aligned_cols=142 Identities=18% Similarity=0.084 Sum_probs=82.2
Q ss_pred HHHHHHHHHhccCC-CCCCeEEEecCCCCHHHHHHHHh--CCEEEEEcCCCcHHHHHHHHHHHHHcCCceEEEEeecCCC
Q 026274 55 SVILAEYVWQQRYR-FSGANVVELGAGTSLPGLVAAKV--GSNVTLTDDSNRIEVLKNMRRVCEMNKLNCRVMGLTWGFL 131 (241)
Q Consensus 55 s~~L~~~l~~~~~~-~~~~~VLElGcGtGl~sl~la~~--g~~V~~tD~~~~~~~l~~~~~n~~~n~~~~~~~~l~w~~~ 131 (241)
+..+.+++...... .++.+|||+|||+|..++.+++. +.+|+++|+++ .+++.+++|+..++.++++...|+.+.
T Consensus 14 ~~~~~~~~~~~l~~~~~~~~vLDiG~G~G~~~~~l~~~~~~~~v~~vD~~~--~~~~~a~~~~~~~~~~~~~~~~d~~~~ 91 (215)
T 4dzr_A 14 TEVLVEEAIRFLKRMPSGTRVIDVGTGSGCIAVSIALACPGVSVTAVDLSM--DALAVARRNAERFGAVVDWAAADGIEW 91 (215)
T ss_dssp HHHHHHHHHHHHTTCCTTEEEEEEESSBCHHHHHHHHHCTTEEEEEEECC---------------------CCHHHHHHH
T ss_pred HHHHHHHHHHHhhhcCCCCEEEEecCCHhHHHHHHHHhCCCCeEEEEECCH--HHHHHHHHHHHHhCCceEEEEcchHhh
Confidence 44555555543322 56789999999999999999998 44999999996 699999999988877666665555442
Q ss_pred CcC--cCCCCCcEEEEcCCcCCCccH--------------------------HHHHHHHHHHhhcCCCeE-EEEEeeccC
Q 026274 132 DAS--IFDLNPNIILGADVFYDASAF--------------------------DDLFATITYLLQSSPGSV-FITTYHNRS 182 (241)
Q Consensus 132 ~~~--~~~~~fDlIl~~dvly~~~~~--------------------------~~ll~~~~~lL~~~~~~~-~~~~~~~r~ 182 (241)
... ....+||+|+++.+++..... ..+++.+.++|+ +||. +++.....
T Consensus 92 ~~~~~~~~~~fD~i~~npp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~Lk--pgG~l~~~~~~~~- 168 (215)
T 4dzr_A 92 LIERAERGRPWHAIVSNPPYIPTGEIDQLEPSVRDYEPRLALDGGEDGLQFYRRMAALPPYVLA--RGRAGVFLEVGHN- 168 (215)
T ss_dssp HHHHHHTTCCBSEEEECCCCCC------------------------CTTHHHHHHHTCCGGGBC--SSSEEEEEECTTS-
T ss_pred hhhhhhccCcccEEEECCCCCCCccccccChhhhccCccccccCCCcHHHHHHHHHHHHHHHhc--CCCeEEEEEECCc-
Confidence 111 012689999998776654322 677788888998 5666 66655433
Q ss_pred chhHHHHHHH--HcCCEEEEE
Q 026274 183 GHHLIEFLMV--KWGLKCVKL 201 (241)
Q Consensus 183 ~~~~~~~~~~--~~g~~~~~i 201 (241)
.......++. +.||....+
T Consensus 169 ~~~~~~~~l~~~~~gf~~~~~ 189 (215)
T 4dzr_A 169 QADEVARLFAPWRERGFRVRK 189 (215)
T ss_dssp CHHHHHHHTGGGGGGTEECCE
T ss_pred cHHHHHHHHHHhhcCCceEEE
Confidence 3344555667 788866554
|
| >3dmg_A Probable ribosomal RNA small subunit methyltransf; monomethyltranserase, 16S rRNA methyltransferase, N2 G1207 methyltransferase; HET: SAH; 1.55A {Thermus thermophilus} PDB: 3dmf_A* 3dmh_A* 2zul_A* 2zwv_A* | Back alignment and structure |
|---|
Probab=99.56 E-value=5.5e-14 Score=125.95 Aligned_cols=124 Identities=22% Similarity=0.251 Sum_probs=100.7
Q ss_pred EeccHHHHHHHHHhcc--CCCCCCeEEEecCCCCHHHHHHHHhCCEEEEEcCCCcHHHHHHHHHHHHHcCCceEEEEeec
Q 026274 51 VWPCSVILAEYVWQQR--YRFSGANVVELGAGTSLPGLVAAKVGSNVTLTDDSNRIEVLKNMRRVCEMNKLNCRVMGLTW 128 (241)
Q Consensus 51 ~W~~s~~L~~~l~~~~--~~~~~~~VLElGcGtGl~sl~la~~g~~V~~tD~~~~~~~l~~~~~n~~~n~~~~~~~~l~w 128 (241)
..+.+..+.+.+.... ...++.+|||+|||+|.+++.+++.+++|+++|+++ .+++.+++|+..|+..+++...|+
T Consensus 212 ~d~~t~~ll~~l~~~l~~~~~~~~~VLDlGcG~G~~~~~la~~g~~V~gvDis~--~al~~A~~n~~~~~~~v~~~~~D~ 289 (381)
T 3dmg_A 212 VDPASLLLLEALQERLGPEGVRGRQVLDLGAGYGALTLPLARMGAEVVGVEDDL--ASVLSLQKGLEANALKAQALHSDV 289 (381)
T ss_dssp CCHHHHHHHHHHHHHHCTTTTTTCEEEEETCTTSTTHHHHHHTTCEEEEEESBH--HHHHHHHHHHHHTTCCCEEEECST
T ss_pred CCHHHHHHHHHHHHhhcccCCCCCEEEEEeeeCCHHHHHHHHcCCEEEEEECCH--HHHHHHHHHHHHcCCCeEEEEcch
Confidence 4567777888876543 234678999999999999999999999999999995 799999999999998888887776
Q ss_pred CCCCcCcCCCCCcEEEEcCCcCC-----CccHHHHHHHHHHHhhcCCCeEEEEEeec
Q 026274 129 GFLDASIFDLNPNIILGADVFYD-----ASAFDDLFATITYLLQSSPGSVFITTYHN 180 (241)
Q Consensus 129 ~~~~~~~~~~~fDlIl~~dvly~-----~~~~~~ll~~~~~lL~~~~~~~~~~~~~~ 180 (241)
.+... .+.+||+|+++.++++ ......+++.+.++|+ +||.+++....
T Consensus 290 ~~~~~--~~~~fD~Ii~npp~~~~~~~~~~~~~~~l~~~~~~Lk--pGG~l~iv~n~ 342 (381)
T 3dmg_A 290 DEALT--EEARFDIIVTNPPFHVGGAVILDVAQAFVNVAAARLR--PGGVFFLVSNP 342 (381)
T ss_dssp TTTSC--TTCCEEEEEECCCCCTTCSSCCHHHHHHHHHHHHHEE--EEEEEEEEECT
T ss_pred hhccc--cCCCeEEEEECCchhhcccccHHHHHHHHHHHHHhcC--cCcEEEEEEcC
Confidence 65432 2368999999999887 5677899999999998 66776665444
|
| >2ozv_A Hypothetical protein ATU0636; structural genomics, predicted transferase, predicted O-methyltransferase, PFAM PF05175; HET: MSE; 1.70A {Agrobacterium tumefaciens str} | Back alignment and structure |
|---|
Probab=99.56 E-value=8.4e-14 Score=118.25 Aligned_cols=160 Identities=18% Similarity=0.171 Sum_probs=111.1
Q ss_pred ccHHHHHHHHHhccCCCCCCeEEEecCCCCHHHHHHHHhC--CEEEEEcCCCcHHHHHHHHHHHHH---cCCc--eEEEE
Q 026274 53 PCSVILAEYVWQQRYRFSGANVVELGAGTSLPGLVAAKVG--SNVTLTDDSNRIEVLKNMRRVCEM---NKLN--CRVMG 125 (241)
Q Consensus 53 ~~s~~L~~~l~~~~~~~~~~~VLElGcGtGl~sl~la~~g--~~V~~tD~~~~~~~l~~~~~n~~~---n~~~--~~~~~ 125 (241)
..+.+|+.|+. ..++.+|||+|||+|.+++.+++.+ .+|+++|+++ ++++.+++|+.. ++.. +++..
T Consensus 23 ~D~~lL~~~~~----~~~~~~VLDlG~G~G~~~l~la~~~~~~~v~gvDi~~--~~~~~a~~n~~~~~~~~l~~~v~~~~ 96 (260)
T 2ozv_A 23 MDAMLLASLVA----DDRACRIADLGAGAGAAGMAVAARLEKAEVTLYERSQ--EMAEFARRSLELPDNAAFSARIEVLE 96 (260)
T ss_dssp CHHHHHHHTCC----CCSCEEEEECCSSSSHHHHHHHHHCTTEEEEEEESSH--HHHHHHHHHTTSGGGTTTGGGEEEEE
T ss_pred cHHHHHHHHhc----ccCCCEEEEeCChHhHHHHHHHHhCCCCeEEEEECCH--HHHHHHHHHHHhhhhCCCcceEEEEe
Confidence 56777877763 2356799999999999999999985 5999999995 799999999998 8774 78888
Q ss_pred eecCCCCc-----CcCCCCCcEEEEcCCcCCC------------------ccHHHHHHHHHHHhhcCCCeEEEEEeeccC
Q 026274 126 LTWGFLDA-----SIFDLNPNIILGADVFYDA------------------SAFDDLFATITYLLQSSPGSVFITTYHNRS 182 (241)
Q Consensus 126 l~w~~~~~-----~~~~~~fDlIl~~dvly~~------------------~~~~~ll~~~~~lL~~~~~~~~~~~~~~r~ 182 (241)
.|+.+... ...+.+||+|+++.+++.. ...+.+++.+.++|+ ++|.+++.+....
T Consensus 97 ~D~~~~~~~~~~~~~~~~~fD~Vv~nPPy~~~~~~~~~~~~~~~a~~~~~~~~~~~l~~~~~~Lk--pgG~l~~~~~~~~ 174 (260)
T 2ozv_A 97 ADVTLRAKARVEAGLPDEHFHHVIMNPPYNDAGDRRTPDALKAEAHAMTEGLFEDWIRTASAIMV--SGGQLSLISRPQS 174 (260)
T ss_dssp CCTTCCHHHHHHTTCCTTCEEEEEECCCC---------------------CCHHHHHHHHHHHEE--EEEEEEEEECGGG
T ss_pred CCHHHHhhhhhhhccCCCCcCEEEECCCCcCCCCCCCcCHHHHHHhhcCcCCHHHHHHHHHHHcC--CCCEEEEEEcHHH
Confidence 87766521 1234689999998777653 247889999999998 6777777665543
Q ss_pred chhHHHHHHHHcCCEEEEEecCCCCCCcccccccCCCeEEEEEEec
Q 026274 183 GHHLIEFLMVKWGLKCVKLVDGFSFLPHYKARELNGNIQLAEIVLN 228 (241)
Q Consensus 183 ~~~~~~~~~~~~g~~~~~i~~~~~~~p~~~~~~~~~~~~l~~i~~~ 228 (241)
..... ..+++. |....+...+.. .....++.+++..+.
T Consensus 175 ~~~~~-~~l~~~-~~~~~i~~v~~~------~~~~~~~~lv~~~k~ 212 (260)
T 2ozv_A 175 VAEII-AACGSR-FGGLEITLIHPR------PGEDAVRMLVTAIKG 212 (260)
T ss_dssp HHHHH-HHHTTT-EEEEEEEEEESS------TTSCCCEEEEEEEET
T ss_pred HHHHH-HHHHhc-CCceEEEEEcCC------CCCCceEEEEEEEeC
Confidence 33333 334443 766665322221 133446667776654
|
| >1xtp_A LMAJ004091AAA; SGPP, structural genomics, PSI, protein structure initiative dependent methyltransferase; HET: SAI; 1.94A {Leishmania major} SCOP: c.66.1.42 | Back alignment and structure |
|---|
Probab=99.56 E-value=6.4e-14 Score=117.24 Aligned_cols=129 Identities=12% Similarity=0.025 Sum_probs=99.1
Q ss_pred CCCCCeEEEecCCCCHHHHHHHHhCC-EEEEEcCCCcHHHHHHHHHHHHHcCCceEEEEeecCCCCcCcCCCCCcEEEEc
Q 026274 68 RFSGANVVELGAGTSLPGLVAAKVGS-NVTLTDDSNRIEVLKNMRRVCEMNKLNCRVMGLTWGFLDASIFDLNPNIILGA 146 (241)
Q Consensus 68 ~~~~~~VLElGcGtGl~sl~la~~g~-~V~~tD~~~~~~~l~~~~~n~~~n~~~~~~~~l~w~~~~~~~~~~~fDlIl~~ 146 (241)
..++.+|||+|||+|..+..+++.+. +|+++|+++ .+++.+++++..+ .++.+...++.+. +..+.+||+|++.
T Consensus 91 ~~~~~~vLDiG~G~G~~~~~l~~~~~~~v~~vD~s~--~~~~~a~~~~~~~-~~~~~~~~d~~~~--~~~~~~fD~v~~~ 165 (254)
T 1xtp_A 91 GHGTSRALDCGAGIGRITKNLLTKLYATTDLLEPVK--HMLEEAKRELAGM-PVGKFILASMETA--TLPPNTYDLIVIQ 165 (254)
T ss_dssp TCCCSEEEEETCTTTHHHHHTHHHHCSEEEEEESCH--HHHHHHHHHTTTS-SEEEEEESCGGGC--CCCSSCEEEEEEE
T ss_pred ccCCCEEEEECCCcCHHHHHHHHhhcCEEEEEeCCH--HHHHHHHHHhccC-CceEEEEccHHHC--CCCCCCeEEEEEc
Confidence 34678999999999999999988754 799999995 6999999887654 5577777776653 2334689999999
Q ss_pred CCcCCC--ccHHHHHHHHHHHhhcCCCeEEEEEeec---------------cCchhHHHHHHHHcCCEEEEEec
Q 026274 147 DVFYDA--SAFDDLFATITYLLQSSPGSVFITTYHN---------------RSGHHLIEFLMVKWGLKCVKLVD 203 (241)
Q Consensus 147 dvly~~--~~~~~ll~~~~~lL~~~~~~~~~~~~~~---------------r~~~~~~~~~~~~~g~~~~~i~~ 203 (241)
.++++. .....+++.+.++|+ |||.+++.... ......+..++++.||+...+..
T Consensus 166 ~~l~~~~~~~~~~~l~~~~~~Lk--pgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aGf~~~~~~~ 237 (254)
T 1xtp_A 166 WTAIYLTDADFVKFFKHCQQALT--PNGYIFFKENCSTGDRFLVDKEDSSLTRSDIHYKRLFNESGVRVVKEAF 237 (254)
T ss_dssp SCGGGSCHHHHHHHHHHHHHHEE--EEEEEEEEEEBC--CCEEEETTTTEEEBCHHHHHHHHHHHTCCEEEEEE
T ss_pred chhhhCCHHHHHHHHHHHHHhcC--CCeEEEEEecCCCcccceecccCCcccCCHHHHHHHHHHCCCEEEEeee
Confidence 999998 568899999999998 56666654321 11234556678899999988744
|
| >3m70_A Tellurite resistance protein TEHB homolog; structural genomics, PSI-2, protein ST initiative; 1.95A {Haemophilus influenzae} | Back alignment and structure |
|---|
Probab=99.55 E-value=7e-14 Score=119.59 Aligned_cols=100 Identities=18% Similarity=0.195 Sum_probs=85.9
Q ss_pred CCCeEEEecCCCCHHHHHHHHhCCEEEEEcCCCcHHHHHHHHHHHHHcCCceEEEEeecCCCCcCcCCCCCcEEEEcCCc
Q 026274 70 SGANVVELGAGTSLPGLVAAKVGSNVTLTDDSNRIEVLKNMRRVCEMNKLNCRVMGLTWGFLDASIFDLNPNIILGADVF 149 (241)
Q Consensus 70 ~~~~VLElGcGtGl~sl~la~~g~~V~~tD~~~~~~~l~~~~~n~~~n~~~~~~~~l~w~~~~~~~~~~~fDlIl~~dvl 149 (241)
++.+|||+|||+|..+..+++.|++|+++|+++ .+++.+++++..++.++++...|..+... +.+||+|+++.++
T Consensus 120 ~~~~vLD~GcG~G~~~~~l~~~g~~v~~vD~s~--~~~~~a~~~~~~~~~~~~~~~~d~~~~~~---~~~fD~i~~~~~~ 194 (286)
T 3m70_A 120 SPCKVLDLGCGQGRNSLYLSLLGYDVTSWDHNE--NSIAFLNETKEKENLNISTALYDINAANI---QENYDFIVSTVVF 194 (286)
T ss_dssp CSCEEEEESCTTCHHHHHHHHTTCEEEEEESCH--HHHHHHHHHHHHTTCCEEEEECCGGGCCC---CSCEEEEEECSSG
T ss_pred CCCcEEEECCCCCHHHHHHHHCCCeEEEEECCH--HHHHHHHHHHHHcCCceEEEEeccccccc---cCCccEEEEccch
Confidence 678999999999999999999999999999995 79999999999998888888877765422 5689999999999
Q ss_pred CCC--ccHHHHHHHHHHHhhcCCCeEEEE
Q 026274 150 YDA--SAFDDLFATITYLLQSSPGSVFIT 176 (241)
Q Consensus 150 y~~--~~~~~ll~~~~~lL~~~~~~~~~~ 176 (241)
++. +....+++.+.++|+ +||.+++
T Consensus 195 ~~~~~~~~~~~l~~~~~~Lk--pgG~l~i 221 (286)
T 3m70_A 195 MFLNRERVPSIIKNMKEHTN--VGGYNLI 221 (286)
T ss_dssp GGSCGGGHHHHHHHHHHTEE--EEEEEEE
T ss_pred hhCCHHHHHHHHHHHHHhcC--CCcEEEE
Confidence 975 567799999999998 5665443
|
| >2ift_A Putative methylase HI0767; NESG, Y767_haein, structural genomics, PSI-2, protein structure initiative; 2.30A {Haemophilus influenzae} SCOP: c.66.1.46 | Back alignment and structure |
|---|
Probab=99.55 E-value=9.7e-15 Score=119.27 Aligned_cols=108 Identities=10% Similarity=0.100 Sum_probs=84.7
Q ss_pred CCCeEEEecCCCCHHHHHHHHhCC-EEEEEcCCCcHHHHHHHHHHHHHcCC---ceEEEEeecCCCCcCcCCCC-CcEEE
Q 026274 70 SGANVVELGAGTSLPGLVAAKVGS-NVTLTDDSNRIEVLKNMRRVCEMNKL---NCRVMGLTWGFLDASIFDLN-PNIIL 144 (241)
Q Consensus 70 ~~~~VLElGcGtGl~sl~la~~g~-~V~~tD~~~~~~~l~~~~~n~~~n~~---~~~~~~l~w~~~~~~~~~~~-fDlIl 144 (241)
++.+|||+|||+|.+++.+++.++ +|+++|+++ ++++.+++|+..++. ++++...|..+......+.+ ||+|+
T Consensus 53 ~~~~vLDlGcGtG~~~~~~~~~~~~~v~gvD~s~--~~l~~a~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~fD~I~ 130 (201)
T 2ift_A 53 HQSECLDGFAGSGSLGFEALSRQAKKVTFLELDK--TVANQLKKNLQTLKCSSEQAEVINQSSLDFLKQPQNQPHFDVVF 130 (201)
T ss_dssp TTCEEEETTCTTCHHHHHHHHTTCSEEEEECSCH--HHHHHHHHHHHHTTCCTTTEEEECSCHHHHTTSCCSSCCEEEEE
T ss_pred CCCeEEEcCCccCHHHHHHHHccCCEEEEEECCH--HHHHHHHHHHHHhCCCccceEEEECCHHHHHHhhccCCCCCEEE
Confidence 678999999999999999888775 899999995 799999999999886 67777666544322222457 99999
Q ss_pred EcCCcCCCccHHHHHHHH--HHHhhcCCCeEEEEEeeccC
Q 026274 145 GADVFYDASAFDDLFATI--TYLLQSSPGSVFITTYHNRS 182 (241)
Q Consensus 145 ~~dvly~~~~~~~ll~~~--~~lL~~~~~~~~~~~~~~r~ 182 (241)
++.+ |+......+++.+ .++|+ |||.+++....+.
T Consensus 131 ~~~~-~~~~~~~~~l~~~~~~~~Lk--pgG~l~i~~~~~~ 167 (201)
T 2ift_A 131 LDPP-FHFNLAEQAISLLCENNWLK--PNALIYVETEKDK 167 (201)
T ss_dssp ECCC-SSSCHHHHHHHHHHHTTCEE--EEEEEEEEEESSS
T ss_pred ECCC-CCCccHHHHHHHHHhcCccC--CCcEEEEEECCCC
Confidence 8877 6677788888888 45687 6787777766544
|
| >1l3i_A Precorrin-6Y methyltransferase/putative decarboxylase; structural genomics, beta barrel, rossmann fold, tetramer; HET: SAH; 1.95A {Methanothermobacterthermautotrophicus} SCOP: c.66.1.22 PDB: 1kxz_A 1l3b_A 1f38_A 1l3c_A* | Back alignment and structure |
|---|
Probab=99.55 E-value=4.5e-14 Score=112.60 Aligned_cols=137 Identities=15% Similarity=0.011 Sum_probs=101.0
Q ss_pred HHHHHHHHhccCCCCCCeEEEecCCCCHHHHHHHHhCCEEEEEcCCCcHHHHHHHHHHHHHcCC--ceEEEEeecCCCCc
Q 026274 56 VILAEYVWQQRYRFSGANVVELGAGTSLPGLVAAKVGSNVTLTDDSNRIEVLKNMRRVCEMNKL--NCRVMGLTWGFLDA 133 (241)
Q Consensus 56 ~~L~~~l~~~~~~~~~~~VLElGcGtGl~sl~la~~g~~V~~tD~~~~~~~l~~~~~n~~~n~~--~~~~~~l~w~~~~~ 133 (241)
..+..++.......++.+|||+|||+|..++.+++.+.+|+++|+++ ++++.+++|+..++. ++.+...++.+...
T Consensus 19 ~~~~~~~~~~~~~~~~~~vldiG~G~G~~~~~l~~~~~~v~~~D~~~--~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~ 96 (192)
T 1l3i_A 19 MEVRCLIMCLAEPGKNDVAVDVGCGTGGVTLELAGRVRRVYAIDRNP--EAISTTEMNLQRHGLGDNVTLMEGDAPEALC 96 (192)
T ss_dssp HHHHHHHHHHHCCCTTCEEEEESCTTSHHHHHHHTTSSEEEEEESCH--HHHHHHHHHHHHTTCCTTEEEEESCHHHHHT
T ss_pred HHHHHHHHHhcCCCCCCEEEEECCCCCHHHHHHHHhcCEEEEEECCH--HHHHHHHHHHHHcCCCcceEEEecCHHHhcc
Confidence 34445555444556788999999999999999999889999999995 799999999988876 67777766654111
Q ss_pred CcCCCCCcEEEEcCCcCCCccHHHHHHHHHHHhhcCCCeEEEEEeeccCchhHHHHHHHHcCCEEEEE
Q 026274 134 SIFDLNPNIILGADVFYDASAFDDLFATITYLLQSSPGSVFITTYHNRSGHHLIEFLMVKWGLKCVKL 201 (241)
Q Consensus 134 ~~~~~~fDlIl~~dvly~~~~~~~ll~~~~~lL~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~i 201 (241)
. ..+||+|+++.++. ....+++.+.++|+ +||.+++.............++++.||.+..+
T Consensus 97 ~--~~~~D~v~~~~~~~---~~~~~l~~~~~~l~--~gG~l~~~~~~~~~~~~~~~~l~~~g~~~~~~ 157 (192)
T 1l3i_A 97 K--IPDIDIAVVGGSGG---ELQEILRIIKDKLK--PGGRIIVTAILLETKFEAMECLRDLGFDVNIT 157 (192)
T ss_dssp T--SCCEEEEEESCCTT---CHHHHHHHHHHTEE--EEEEEEEEECBHHHHHHHHHHHHHTTCCCEEE
T ss_pred c--CCCCCEEEECCchH---HHHHHHHHHHHhcC--CCcEEEEEecCcchHHHHHHHHHHCCCceEEE
Confidence 1 14799999987764 56899999999998 66776666544434344455667888855443
|
| >1ve3_A Hypothetical protein PH0226; dimer, riken structural genomics/proteomics initiative, RSGI, structural genomics, unknown function, NPPSFA; HET: SAM; 2.10A {Pyrococcus horikoshii} SCOP: c.66.1.43 | Back alignment and structure |
|---|
Probab=99.55 E-value=8.8e-14 Score=114.34 Aligned_cols=116 Identities=16% Similarity=0.228 Sum_probs=92.2
Q ss_pred HHHHHHHHHhccCCCCCCeEEEecCCCCHHHHHHHHhCCEEEEEcCCCcHHHHHHHHHHHHHcCCceEEEEeecCCCCcC
Q 026274 55 SVILAEYVWQQRYRFSGANVVELGAGTSLPGLVAAKVGSNVTLTDDSNRIEVLKNMRRVCEMNKLNCRVMGLTWGFLDAS 134 (241)
Q Consensus 55 s~~L~~~l~~~~~~~~~~~VLElGcGtGl~sl~la~~g~~V~~tD~~~~~~~l~~~~~n~~~n~~~~~~~~l~w~~~~~~ 134 (241)
...+.+.+..... .+.+|||+|||+|..+..+++.+.+|+++|+++ ++++.++++...++.++++...|+.+. +
T Consensus 25 ~~~~~~~l~~~~~--~~~~vLDlG~G~G~~~~~l~~~~~~v~~vD~s~--~~~~~a~~~~~~~~~~~~~~~~d~~~~--~ 98 (227)
T 1ve3_A 25 IETLEPLLMKYMK--KRGKVLDLACGVGGFSFLLEDYGFEVVGVDISE--DMIRKAREYAKSRESNVEFIVGDARKL--S 98 (227)
T ss_dssp HHHHHHHHHHSCC--SCCEEEEETCTTSHHHHHHHHTTCEEEEEESCH--HHHHHHHHHHHHTTCCCEEEECCTTSC--C
T ss_pred HHHHHHHHHHhcC--CCCeEEEEeccCCHHHHHHHHcCCEEEEEECCH--HHHHHHHHHHHhcCCCceEEECchhcC--C
Confidence 3344455544332 377999999999999999999999999999995 799999999988887788888777653 2
Q ss_pred cCCCCCcEEEEcCC--cCCCccHHHHHHHHHHHhhcCCCeEEEEEe
Q 026274 135 IFDLNPNIILGADV--FYDASAFDDLFATITYLLQSSPGSVFITTY 178 (241)
Q Consensus 135 ~~~~~fDlIl~~dv--ly~~~~~~~ll~~~~~lL~~~~~~~~~~~~ 178 (241)
..+.+||+|+++++ +++..+...+++.+.++|+ +||.+++..
T Consensus 99 ~~~~~~D~v~~~~~~~~~~~~~~~~~l~~~~~~L~--~gG~l~~~~ 142 (227)
T 1ve3_A 99 FEDKTFDYVIFIDSIVHFEPLELNQVFKEVRRVLK--PSGKFIMYF 142 (227)
T ss_dssp SCTTCEEEEEEESCGGGCCHHHHHHHHHHHHHHEE--EEEEEEEEE
T ss_pred CCCCcEEEEEEcCchHhCCHHHHHHHHHHHHHHcC--CCcEEEEEe
Confidence 33468999999999 6777788899999999998 566665553
|
| >2gb4_A Thiopurine S-methyltransferase; 18204406, thiopurine methyltransferase, structural genomics, PSI, protein structure initiative; HET: SAH; 1.25A {Mus musculus} PDB: 3bgi_A* 3bgd_A* 2bzg_A* 2h11_A* | Back alignment and structure |
|---|
Probab=99.54 E-value=2e-13 Score=115.62 Aligned_cols=139 Identities=12% Similarity=-0.042 Sum_probs=95.8
Q ss_pred HHHHHHHhccCCCCCCeEEEecCCCCHHHHHHHHhCCEEEEEcCCCcHHHHHHHHHHHHH------------------cC
Q 026274 57 ILAEYVWQQRYRFSGANVVELGAGTSLPGLVAAKVGSNVTLTDDSNRIEVLKNMRRVCEM------------------NK 118 (241)
Q Consensus 57 ~L~~~l~~~~~~~~~~~VLElGcGtGl~sl~la~~g~~V~~tD~~~~~~~l~~~~~n~~~------------------n~ 118 (241)
.+.+|+.......++.+|||+|||+|..+..+|+.|++|+++|+|+ .|++.++++... .+
T Consensus 55 ~l~~~~~~~~~~~~~~~vLD~GCG~G~~~~~La~~G~~V~gvD~S~--~~i~~a~~~~~~~~~~~~~~~~~~~~~~~~~~ 132 (252)
T 2gb4_A 55 LLKKHLDTFLKGQSGLRVFFPLCGKAIEMKWFADRGHTVVGVEISE--IGIREFFAEQNLSYTEEPLAEIAGAKVFKSSS 132 (252)
T ss_dssp HHHHHHHHHHTTCCSCEEEETTCTTCTHHHHHHHTTCEEEEECSCH--HHHHHHHHHTTCCEEEEECTTSTTCEEEEETT
T ss_pred HHHHHHHHhccCCCCCeEEEeCCCCcHHHHHHHHCCCeEEEEECCH--HHHHHHHHhcccccccccccccccccccccCC
Confidence 5666665432223678999999999999999999999999999995 699988765531 23
Q ss_pred CceEEEEeecCCCCcCcCCCCCcEEEEcCCcCCCc--cHHHHHHHHHHHhhcCCCeEEE-EEeecc----------Cchh
Q 026274 119 LNCRVMGLTWGFLDASIFDLNPNIILGADVFYDAS--AFDDLFATITYLLQSSPGSVFI-TTYHNR----------SGHH 185 (241)
Q Consensus 119 ~~~~~~~l~w~~~~~~~~~~~fDlIl~~dvly~~~--~~~~ll~~~~~lL~~~~~~~~~-~~~~~r----------~~~~ 185 (241)
.++++...|..+.... ..++||+|++..++++.+ ....+++.+.++|+ |||.++ ++.... ....
T Consensus 133 ~~i~~~~~D~~~l~~~-~~~~FD~V~~~~~l~~l~~~~~~~~l~~~~~~Lk--pGG~l~l~~~~~~~~~~~g~~~~~~~~ 209 (252)
T 2gb4_A 133 GSISLYCCSIFDLPRA-NIGKFDRIWDRGALVAINPGDHDRYADIILSLLR--KEFQYLVAVLSYDPTKHAGPPFYVPSA 209 (252)
T ss_dssp SSEEEEESCTTTGGGG-CCCCEEEEEESSSTTTSCGGGHHHHHHHHHHTEE--EEEEEEEEEEECCTTSCCCSSCCCCHH
T ss_pred CceEEEECccccCCcc-cCCCEEEEEEhhhhhhCCHHHHHHHHHHHHHHcC--CCeEEEEEEEecCCccCCCCCCCCCHH
Confidence 4677777776554221 126899999988887653 46678999999999 566653 432211 1223
Q ss_pred HHHHHHHHcCCEEEEE
Q 026274 186 LIEFLMVKWGLKCVKL 201 (241)
Q Consensus 186 ~~~~~~~~~g~~~~~i 201 (241)
.+..+... +|++..+
T Consensus 210 el~~~l~~-~f~v~~~ 224 (252)
T 2gb4_A 210 ELKRLFGT-KCSMQCL 224 (252)
T ss_dssp HHHHHHTT-TEEEEEE
T ss_pred HHHHHhhC-CeEEEEE
Confidence 34444444 5887766
|
| >2fk8_A Methoxy mycolic acid synthase 4; S-adenosylmethionine-dependent methyltransferase fold, trans; HET: SAM; 2.00A {Mycobacterium tuberculosis} SCOP: c.66.1.18 PDB: 2fk7_A* 3ha3_A* 3ha5_A* 3ha7_A* | Back alignment and structure |
|---|
Probab=99.54 E-value=1.6e-13 Score=119.20 Aligned_cols=113 Identities=13% Similarity=0.119 Sum_probs=90.5
Q ss_pred HHHHHHHHhccCCCCCCeEEEecCCCCHHHHHHHHh-CCEEEEEcCCCcHHHHHHHHHHHHHcCC--ceEEEEeecCCCC
Q 026274 56 VILAEYVWQQRYRFSGANVVELGAGTSLPGLVAAKV-GSNVTLTDDSNRIEVLKNMRRVCEMNKL--NCRVMGLTWGFLD 132 (241)
Q Consensus 56 ~~L~~~l~~~~~~~~~~~VLElGcGtGl~sl~la~~-g~~V~~tD~~~~~~~l~~~~~n~~~n~~--~~~~~~l~w~~~~ 132 (241)
....+.+.......++.+|||+|||+|..+..+++. |++|+++|+++ ++++.+++++...++ ++++...++.+.
T Consensus 76 ~~~~~~~~~~~~~~~~~~vLDiGcG~G~~~~~la~~~~~~v~gvD~s~--~~~~~a~~~~~~~~~~~~v~~~~~d~~~~- 152 (318)
T 2fk8_A 76 YAKVDLNLDKLDLKPGMTLLDIGCGWGTTMRRAVERFDVNVIGLTLSK--NQHARCEQVLASIDTNRSRQVLLQGWEDF- 152 (318)
T ss_dssp HHHHHHHHTTSCCCTTCEEEEESCTTSHHHHHHHHHHCCEEEEEESCH--HHHHHHHHHHHTSCCSSCEEEEESCGGGC-
T ss_pred HHHHHHHHHhcCCCCcCEEEEEcccchHHHHHHHHHCCCEEEEEECCH--HHHHHHHHHHHhcCCCCceEEEECChHHC-
Confidence 344455555555567889999999999999999987 89999999995 799999999887775 366666666443
Q ss_pred cCcCCCCCcEEEEcCCcCCC--ccHHHHHHHHHHHhhcCCCeEEEEE
Q 026274 133 ASIFDLNPNIILGADVFYDA--SAFDDLFATITYLLQSSPGSVFITT 177 (241)
Q Consensus 133 ~~~~~~~fDlIl~~dvly~~--~~~~~ll~~~~~lL~~~~~~~~~~~ 177 (241)
+.+||+|++..++++. ++...+++.+.++|+ |||.+++.
T Consensus 153 ----~~~fD~v~~~~~l~~~~~~~~~~~l~~~~~~Lk--pgG~l~~~ 193 (318)
T 2fk8_A 153 ----AEPVDRIVSIEAFEHFGHENYDDFFKRCFNIMP--ADGRMTVQ 193 (318)
T ss_dssp ----CCCCSEEEEESCGGGTCGGGHHHHHHHHHHHSC--TTCEEEEE
T ss_pred ----CCCcCEEEEeChHHhcCHHHHHHHHHHHHHhcC--CCcEEEEE
Confidence 2689999999999987 788999999999998 55655544
|
| >2kw5_A SLR1183 protein; structural genomics, northeast structural genomics consortium (NESG), PSI-2, protein structure initiative, unknown function; NMR {Synechocystis} PDB: 3mer_A | Back alignment and structure |
|---|
Probab=99.54 E-value=1.8e-13 Score=110.91 Aligned_cols=102 Identities=20% Similarity=0.220 Sum_probs=83.4
Q ss_pred CCCeEEEecCCCCHHHHHHHHhCCEEEEEcCCCcHHHHHHHHHHHHHcCCceEEEEeecCCCCcCcCCCCCcEEEEcCCc
Q 026274 70 SGANVVELGAGTSLPGLVAAKVGSNVTLTDDSNRIEVLKNMRRVCEMNKLNCRVMGLTWGFLDASIFDLNPNIILGADVF 149 (241)
Q Consensus 70 ~~~~VLElGcGtGl~sl~la~~g~~V~~tD~~~~~~~l~~~~~n~~~n~~~~~~~~l~w~~~~~~~~~~~fDlIl~~dvl 149 (241)
++ +|||+|||+|..+..+++.|.+|+++|+++ ++++.++++...++.++.+...+..+. +..+.+||+|+++.+.
T Consensus 30 ~~-~vLdiGcG~G~~~~~l~~~~~~v~~vD~s~--~~~~~a~~~~~~~~~~~~~~~~d~~~~--~~~~~~fD~v~~~~~~ 104 (202)
T 2kw5_A 30 QG-KILCLAEGEGRNACFLASLGYEVTAVDQSS--VGLAKAKQLAQEKGVKITTVQSNLADF--DIVADAWEGIVSIFCH 104 (202)
T ss_dssp SS-EEEECCCSCTHHHHHHHTTTCEEEEECSSH--HHHHHHHHHHHHHTCCEEEECCBTTTB--SCCTTTCSEEEEECCC
T ss_pred CC-CEEEECCCCCHhHHHHHhCCCeEEEEECCH--HHHHHHHHHHHhcCCceEEEEcChhhc--CCCcCCccEEEEEhhc
Confidence 45 999999999999999999999999999995 799999999988887888777776654 2334689999997654
Q ss_pred CCCccHHHHHHHHHHHhhcCCCeEEEEEe
Q 026274 150 YDASAFDDLFATITYLLQSSPGSVFITTY 178 (241)
Q Consensus 150 y~~~~~~~ll~~~~~lL~~~~~~~~~~~~ 178 (241)
+.......+++.+.++|+ |||.+++..
T Consensus 105 ~~~~~~~~~l~~~~~~L~--pgG~l~~~~ 131 (202)
T 2kw5_A 105 LPSSLRQQLYPKVYQGLK--PGGVFILEG 131 (202)
T ss_dssp CCHHHHHHHHHHHHTTCC--SSEEEEEEE
T ss_pred CCHHHHHHHHHHHHHhcC--CCcEEEEEE
Confidence 545678899999999998 667666653
|
| >2p8j_A S-adenosylmethionine-dependent methyltransferase; NP_349143.1; HET: PGE GOL; 2.00A {Clostridium acetobutylicum} | Back alignment and structure |
|---|
Probab=99.54 E-value=3.3e-14 Score=115.59 Aligned_cols=106 Identities=16% Similarity=0.196 Sum_probs=85.7
Q ss_pred CCCCCeEEEecCCCCHH-HHHHHHhCCEEEEEcCCCcHHHHHHHHHHHHHcCCceEEEEeecCCCCcCcCCCCCcEEEEc
Q 026274 68 RFSGANVVELGAGTSLP-GLVAAKVGSNVTLTDDSNRIEVLKNMRRVCEMNKLNCRVMGLTWGFLDASIFDLNPNIILGA 146 (241)
Q Consensus 68 ~~~~~~VLElGcGtGl~-sl~la~~g~~V~~tD~~~~~~~l~~~~~n~~~n~~~~~~~~l~w~~~~~~~~~~~fDlIl~~ 146 (241)
..++.+|||+|||+|.. ...++..|.+|+++|+++ ++++.+++++..++.++.+...+..+. +..+.+||+|+++
T Consensus 21 ~~~~~~vLDiGcG~G~~~~~~~~~~~~~v~~vD~s~--~~~~~a~~~~~~~~~~~~~~~~d~~~~--~~~~~~fD~v~~~ 96 (209)
T 2p8j_A 21 SNLDKTVLDCGAGGDLPPLSIFVEDGYKTYGIEISD--LQLKKAENFSRENNFKLNISKGDIRKL--PFKDESMSFVYSY 96 (209)
T ss_dssp SSSCSEEEEESCCSSSCTHHHHHHTTCEEEEEECCH--HHHHHHHHHHHHHTCCCCEEECCTTSC--CSCTTCEEEEEEC
T ss_pred cCCCCEEEEECCCCCHHHHHHHHhCCCEEEEEECCH--HHHHHHHHHHHhcCCceEEEECchhhC--CCCCCceeEEEEc
Confidence 34578999999999976 455566788999999995 799999999888777788887777653 2335689999999
Q ss_pred CCcCCC--ccHHHHHHHHHHHhhcCCCeEEEEEee
Q 026274 147 DVFYDA--SAFDDLFATITYLLQSSPGSVFITTYH 179 (241)
Q Consensus 147 dvly~~--~~~~~ll~~~~~lL~~~~~~~~~~~~~ 179 (241)
.++++. .+...+++.+.++|+ |||.+++...
T Consensus 97 ~~l~~~~~~~~~~~l~~~~~~Lk--pgG~l~~~~~ 129 (209)
T 2p8j_A 97 GTIFHMRKNDVKEAIDEIKRVLK--PGGLACINFL 129 (209)
T ss_dssp SCGGGSCHHHHHHHHHHHHHHEE--EEEEEEEEEE
T ss_pred ChHHhCCHHHHHHHHHHHHHHcC--CCcEEEEEEe
Confidence 999987 788999999999998 6676666543
|
| >4fsd_A Arsenic methyltransferase; rossmann fold; 1.75A {Cyanidioschyzon SP} PDB: 4fr0_A* 4fs8_A 3p7e_A 3qnh_A 3qhu_A | Back alignment and structure |
|---|
Probab=99.54 E-value=1.2e-13 Score=123.62 Aligned_cols=131 Identities=23% Similarity=0.224 Sum_probs=101.1
Q ss_pred CCCCCeEEEecCCCCHHHHHHHHh---CCEEEEEcCCCcHHHHHHHHHHHHHc-----C----CceEEEEeecCCCCc--
Q 026274 68 RFSGANVVELGAGTSLPGLVAAKV---GSNVTLTDDSNRIEVLKNMRRVCEMN-----K----LNCRVMGLTWGFLDA-- 133 (241)
Q Consensus 68 ~~~~~~VLElGcGtGl~sl~la~~---g~~V~~tD~~~~~~~l~~~~~n~~~n-----~----~~~~~~~l~w~~~~~-- 133 (241)
..++.+|||+|||+|..++.+++. +.+|+++|+++ ++++.+++|+..+ + .++++...++.+...
T Consensus 81 ~~~~~~VLDlGcG~G~~~~~la~~~~~~~~v~gvD~s~--~~l~~a~~~~~~~~~~~~g~~~~~~v~~~~~d~~~l~~~~ 158 (383)
T 4fsd_A 81 SLEGATVLDLGCGTGRDVYLASKLVGEHGKVIGVDMLD--NQLEVARKYVEYHAEKFFGSPSRSNVRFLKGFIENLATAE 158 (383)
T ss_dssp GGTTCEEEEESCTTSHHHHHHHHHHTTTCEEEEEECCH--HHHHHHHHTHHHHHHHHHSSTTCCCEEEEESCTTCGGGCB
T ss_pred CCCCCEEEEecCccCHHHHHHHHHhCCCCEEEEEECCH--HHHHHHHHHHHHhhhhcccccCCCceEEEEccHHHhhhcc
Confidence 347789999999999999999885 45999999995 7999999988755 3 577888877765421
Q ss_pred --CcCCCCCcEEEEcCCcCCCccHHHHHHHHHHHhhcCCCeEEEEEeecc----------------------CchhHHHH
Q 026274 134 --SIFDLNPNIILGADVFYDASAFDDLFATITYLLQSSPGSVFITTYHNR----------------------SGHHLIEF 189 (241)
Q Consensus 134 --~~~~~~fDlIl~~dvly~~~~~~~ll~~~~~lL~~~~~~~~~~~~~~r----------------------~~~~~~~~ 189 (241)
+..+.+||+|+++.++++.++...+++.+.++|+ |||.+++..... .....+..
T Consensus 159 ~~~~~~~~fD~V~~~~~l~~~~d~~~~l~~~~r~Lk--pgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 236 (383)
T 4fsd_A 159 PEGVPDSSVDIVISNCVCNLSTNKLALFKEIHRVLR--DGGELYFSDVYADRRLSEAAQQDPILYGECLGGALYLEDFRR 236 (383)
T ss_dssp SCCCCTTCEEEEEEESCGGGCSCHHHHHHHHHHHEE--EEEEEEEEEEEESSCCCHHHHHCHHHHHTTCTTCCBHHHHHH
T ss_pred cCCCCCCCEEEEEEccchhcCCCHHHHHHHHHHHcC--CCCEEEEEEeccccccCHhHhhhHHHhhcccccCCCHHHHHH
Confidence 3345689999999999999999999999999999 567666542111 12244556
Q ss_pred HHHHcCCEEEEEe
Q 026274 190 LMVKWGLKCVKLV 202 (241)
Q Consensus 190 ~~~~~g~~~~~i~ 202 (241)
++++.||....+.
T Consensus 237 ll~~aGF~~v~~~ 249 (383)
T 4fsd_A 237 LVAEAGFRDVRLV 249 (383)
T ss_dssp HHHHTTCCCEEEE
T ss_pred HHHHCCCceEEEE
Confidence 6789999877653
|
| >2yqz_A Hypothetical protein TTHA0223; RNA methyltransferase, SAM, structural genomics, NPPSFA; HET: SAM; 1.80A {Thermus thermophilus} PDB: 2yr0_A | Back alignment and structure |
|---|
Probab=99.53 E-value=1.4e-13 Score=115.58 Aligned_cols=108 Identities=15% Similarity=0.176 Sum_probs=87.9
Q ss_pred CCCCCCeEEEecCCCCHHHHHHHHhCCEEEEEcCCCcHHHHHHHHHHHHHcCCceEEEEeecCCCCcCcCCCCCcEEEEc
Q 026274 67 YRFSGANVVELGAGTSLPGLVAAKVGSNVTLTDDSNRIEVLKNMRRVCEMNKLNCRVMGLTWGFLDASIFDLNPNIILGA 146 (241)
Q Consensus 67 ~~~~~~~VLElGcGtGl~sl~la~~g~~V~~tD~~~~~~~l~~~~~n~~~n~~~~~~~~l~w~~~~~~~~~~~fDlIl~~ 146 (241)
...++.+|||+|||+|..+..+++.+++|+++|+++ ++++.+++++.....++.+...++.+. +..+.+||+|+++
T Consensus 36 ~~~~~~~vLDiG~G~G~~~~~l~~~~~~v~~vD~s~--~~~~~a~~~~~~~~~~~~~~~~d~~~~--~~~~~~fD~v~~~ 111 (263)
T 2yqz_A 36 PKGEEPVFLELGVGTGRIALPLIARGYRYIALDADA--AMLEVFRQKIAGVDRKVQVVQADARAI--PLPDESVHGVIVV 111 (263)
T ss_dssp CSSSCCEEEEETCTTSTTHHHHHTTTCEEEEEESCH--HHHHHHHHHTTTSCTTEEEEESCTTSC--CSCTTCEEEEEEE
T ss_pred CCCCCCEEEEeCCcCCHHHHHHHHCCCEEEEEECCH--HHHHHHHHHhhccCCceEEEEcccccC--CCCCCCeeEEEEC
Confidence 344678999999999999999999999999999995 699999988733345678887777653 2335689999999
Q ss_pred CCcCCCccHHHHHHHHHHHhhcCCCeEEEEEeec
Q 026274 147 DVFYDASAFDDLFATITYLLQSSPGSVFITTYHN 180 (241)
Q Consensus 147 dvly~~~~~~~ll~~~~~lL~~~~~~~~~~~~~~ 180 (241)
.++++.++...+++.+.++|+ |||.+++.+..
T Consensus 112 ~~l~~~~~~~~~l~~~~~~L~--pgG~l~~~~~~ 143 (263)
T 2yqz_A 112 HLWHLVPDWPKVLAEAIRVLK--PGGALLEGWDQ 143 (263)
T ss_dssp SCGGGCTTHHHHHHHHHHHEE--EEEEEEEEEEE
T ss_pred CchhhcCCHHHHHHHHHHHCC--CCcEEEEEecC
Confidence 999999999999999999998 56666655433
|
| >2i62_A Nicotinamide N-methyltransferase; structural genomics, structural genomics consortium, SGC; HET: SAH; 1.80A {Mus musculus} PDB: 2iip_A* 3rod_A* | Back alignment and structure |
|---|
Probab=99.53 E-value=7.9e-14 Score=117.29 Aligned_cols=132 Identities=13% Similarity=0.175 Sum_probs=99.1
Q ss_pred CCCCCCeEEEecCCCCHHHHHHHHhCC-EEEEEcCCCcHHHHHHHHHHHHHcCC--------------------------
Q 026274 67 YRFSGANVVELGAGTSLPGLVAAKVGS-NVTLTDDSNRIEVLKNMRRVCEMNKL-------------------------- 119 (241)
Q Consensus 67 ~~~~~~~VLElGcGtGl~sl~la~~g~-~V~~tD~~~~~~~l~~~~~n~~~n~~-------------------------- 119 (241)
...++.+|||+|||+|..++.+++.++ +|+++|+++ .+++.+++++..++.
T Consensus 53 ~~~~~~~vLDlGcG~G~~~~~l~~~~~~~v~gvD~s~--~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 130 (265)
T 2i62_A 53 GAVKGELLIDIGSGPTIYQLLSACESFTEIIVSDYTD--QNLWELQKWLKKEPGAFDWSPVVTYVCDLEGNRMKGPEKEE 130 (265)
T ss_dssp SSCCEEEEEEESCTTCCGGGTTGGGTEEEEEEEESCH--HHHHHHHHHHTTCTTCCCCHHHHHHHHHHTTTCSCHHHHHH
T ss_pred cccCCCEEEEECCCccHHHHHHhhcccCeEEEecCCH--HHHHHHHHHHhcCCccccchhhhhhhhcccccccchHHHHH
Confidence 345778999999999999999999988 999999995 699999988765431
Q ss_pred ----ce-EEEEeecCCCCc--CcCCCCCcEEEEcCCcC----CCccHHHHHHHHHHHhhcCCCeEEEEEee---------
Q 026274 120 ----NC-RVMGLTWGFLDA--SIFDLNPNIILGADVFY----DASAFDDLFATITYLLQSSPGSVFITTYH--------- 179 (241)
Q Consensus 120 ----~~-~~~~l~w~~~~~--~~~~~~fDlIl~~dvly----~~~~~~~ll~~~~~lL~~~~~~~~~~~~~--------- 179 (241)
.+ .+...+..+... +....+||+|+++.+++ +.+....+++.+.++|+ |||.+++...
T Consensus 131 ~l~~~v~~~~~~d~~~~~~~~~~~~~~fD~v~~~~~l~~~~~~~~~~~~~l~~~~~~Lk--pgG~li~~~~~~~~~~~~~ 208 (265)
T 2i62_A 131 KLRRAIKQVLKCDVTQSQPLGGVSLPPADCLLSTLCLDAACPDLPAYRTALRNLGSLLK--PGGFLVMVDALKSSYYMIG 208 (265)
T ss_dssp HHHHHEEEEEECCTTSSSTTTTCCCCCEEEEEEESCHHHHCSSHHHHHHHHHHHHTTEE--EEEEEEEEEESSCCEEEET
T ss_pred HhhhhheeEEEeeeccCCCCCccccCCccEEEEhhhhhhhcCChHHHHHHHHHHHhhCC--CCcEEEEEecCCCceEEcC
Confidence 15 667777665421 11126899999999998 66688999999999998 5666655421
Q ss_pred ------ccCchhHHHHHHHHcCCEEEEEe
Q 026274 180 ------NRSGHHLIEFLMVKWGLKCVKLV 202 (241)
Q Consensus 180 ------~r~~~~~~~~~~~~~g~~~~~i~ 202 (241)
.......+..++++.||++..+.
T Consensus 209 ~~~~~~~~~~~~~~~~~l~~aGf~~~~~~ 237 (265)
T 2i62_A 209 EQKFSSLPLGWETVRDAVEEAGYTIEQFE 237 (265)
T ss_dssp TEEEECCCCCHHHHHHHHHHTTCEEEEEE
T ss_pred CccccccccCHHHHHHHHHHCCCEEEEEE
Confidence 11123356667889999998874
|
| >2a14_A Indolethylamine N-methyltransferase; SGC,INMT, structural genomics, structural genomics consortium; HET: SAH; 1.70A {Homo sapiens} SCOP: c.66.1.15 | Back alignment and structure |
|---|
Probab=99.53 E-value=1.9e-14 Score=122.20 Aligned_cols=132 Identities=16% Similarity=0.222 Sum_probs=94.7
Q ss_pred CCCCCeEEEecCCCCHHHHHHHHhCC-EEEEEcCCCcHHHHHHHHHHHHHcCC---------------------------
Q 026274 68 RFSGANVVELGAGTSLPGLVAAKVGS-NVTLTDDSNRIEVLKNMRRVCEMNKL--------------------------- 119 (241)
Q Consensus 68 ~~~~~~VLElGcGtGl~sl~la~~g~-~V~~tD~~~~~~~l~~~~~n~~~n~~--------------------------- 119 (241)
..++.+|||||||+|+.++.++..|+ +|+++|+|+ .|++.++++++.+..
T Consensus 53 ~~~g~~vLDiGCG~G~~~~~~~~~~~~~v~g~D~s~--~~l~~a~~~~~~~~~~~d~s~~~~~~~~~~~~~~~~~~~~~~ 130 (263)
T 2a14_A 53 GLQGDTLIDIGSGPTIYQVLAACDSFQDITLSDFTD--RNREELEKWLKKEPGAYDWTPAVKFACELEGNSGRWEEKEEK 130 (263)
T ss_dssp SCCEEEEEESSCTTCCGGGTTGGGTEEEEEEEESCH--HHHHHHHHHHHTCTTCCCCHHHHHHHHHHTTCGGGHHHHHHH
T ss_pred CCCCceEEEeCCCccHHHHHHHHhhhcceeeccccH--HHHHHHHHHHhcCCCcccchHHHHHHHhcCCCCcchhhHHHH
Confidence 45788999999999999888888887 799999995 699999987765421
Q ss_pred ---ceE-EEEeecCCCCc--CcCCCCCcEEEEcCCcCCC----ccHHHHHHHHHHHhhcCCCeEEEEEeec---------
Q 026274 120 ---NCR-VMGLTWGFLDA--SIFDLNPNIILGADVFYDA----SAFDDLFATITYLLQSSPGSVFITTYHN--------- 180 (241)
Q Consensus 120 ---~~~-~~~l~w~~~~~--~~~~~~fDlIl~~dvly~~----~~~~~ll~~~~~lL~~~~~~~~~~~~~~--------- 180 (241)
.+. +...|..+... +....+||+|+++-++++. ++...+++.+.++|+ |||.+++....
T Consensus 131 ~~~~i~~~~~~D~~~~~~~~~~~~~~fD~V~~~~~l~~i~~~~~~~~~~l~~i~r~LK--PGG~li~~~~~~~~~~~~g~ 208 (263)
T 2a14_A 131 LRAAVKRVLKCDVHLGNPLAPAVLPLADCVLTLLAMECACCSLDAYRAALCNLASLLK--PGGHLVTTVTLRLPSYMVGK 208 (263)
T ss_dssp HHHHEEEEEECCTTSSSTTTTCCCCCEEEEEEESCHHHHCSSHHHHHHHHHHHHTTEE--EEEEEEEEEESSCCEEEETT
T ss_pred HHhhhheEEeccccCCCCCCccccCCCCEeeehHHHHHhcCCHHHHHHHHHHHHHHcC--CCcEEEEEEeecCccceeCC
Confidence 122 55555544211 1224589999999999763 456788899999999 66766665311
Q ss_pred ------cCchhHHHHHHHHcCCEEEEEec
Q 026274 181 ------RSGHHLIEFLMVKWGLKCVKLVD 203 (241)
Q Consensus 181 ------r~~~~~~~~~~~~~g~~~~~i~~ 203 (241)
+.....+..++.+.||.+..+..
T Consensus 209 ~~~~~~~~~~~~l~~~l~~aGF~i~~~~~ 237 (263)
T 2a14_A 209 REFSCVALEKGEVEQAVLDAGFDIEQLLH 237 (263)
T ss_dssp EEEECCCCCHHHHHHHHHHTTEEEEEEEE
T ss_pred eEeeccccCHHHHHHHHHHCCCEEEEEee
Confidence 11344556677899999988744
|
| >3pfg_A N-methyltransferase; N,N-dimethyltransferase, SAM binding, DTDP-linked sugar BIND transferase; HET: SAM TLO; 1.35A {Streptomyces fradiae} PDB: 3pfh_A* 3px3_A* 3px2_A* | Back alignment and structure |
|---|
Probab=99.53 E-value=1.3e-13 Score=116.44 Aligned_cols=96 Identities=13% Similarity=0.053 Sum_probs=79.0
Q ss_pred CCCeEEEecCCCCHHHHHHHHhCCEEEEEcCCCcHHHHHHHHHHHHHcCCceEEEEeecCCCCcCcCCCCCcEEEEcC-C
Q 026274 70 SGANVVELGAGTSLPGLVAAKVGSNVTLTDDSNRIEVLKNMRRVCEMNKLNCRVMGLTWGFLDASIFDLNPNIILGAD-V 148 (241)
Q Consensus 70 ~~~~VLElGcGtGl~sl~la~~g~~V~~tD~~~~~~~l~~~~~n~~~n~~~~~~~~l~w~~~~~~~~~~~fDlIl~~d-v 148 (241)
++.+|||+|||+|..+..+++.+.+|+++|+++ ++++.++++.. ++.+...|+.+... +.+||+|+++. +
T Consensus 50 ~~~~vLDiGcG~G~~~~~l~~~~~~v~gvD~s~--~~~~~a~~~~~----~~~~~~~d~~~~~~---~~~fD~v~~~~~~ 120 (263)
T 3pfg_A 50 KAASLLDVACGTGMHLRHLADSFGTVEGLELSA--DMLAIARRRNP----DAVLHHGDMRDFSL---GRRFSAVTCMFSS 120 (263)
T ss_dssp TCCEEEEETCTTSHHHHHHTTTSSEEEEEESCH--HHHHHHHHHCT----TSEEEECCTTTCCC---SCCEEEEEECTTG
T ss_pred CCCcEEEeCCcCCHHHHHHHHcCCeEEEEECCH--HHHHHHHhhCC----CCEEEECChHHCCc---cCCcCEEEEcCch
Confidence 567999999999999999999999999999995 69998888654 56777777765422 56899999997 9
Q ss_pred cCCCc---cHHHHHHHHHHHhhcCCCeEEEE
Q 026274 149 FYDAS---AFDDLFATITYLLQSSPGSVFIT 176 (241)
Q Consensus 149 ly~~~---~~~~ll~~~~~lL~~~~~~~~~~ 176 (241)
+++.. ....+++.+.++|+ |||.+++
T Consensus 121 l~~~~~~~~~~~~l~~~~~~L~--pgG~l~i 149 (263)
T 3pfg_A 121 IGHLAGQAELDAALERFAAHVL--PDGVVVV 149 (263)
T ss_dssp GGGSCHHHHHHHHHHHHHHTEE--EEEEEEE
T ss_pred hhhcCCHHHHHHHHHHHHHhcC--CCcEEEE
Confidence 98874 67788999999998 5666665
|
| >1wy7_A Hypothetical protein PH1948; seven-stranded beta sheet, methyltransferase fold, structura genomics, transferase; HET: SAH; 2.20A {Pyrococcus horikoshii} SCOP: c.66.1.32 | Back alignment and structure |
|---|
Probab=99.53 E-value=5.2e-13 Score=108.62 Aligned_cols=123 Identities=16% Similarity=0.124 Sum_probs=92.5
Q ss_pred CCCCCeEEEecCCCCHHHHHHHHhCC-EEEEEcCCCcHHHHHHHHHHHHHcCCceEEEEeecCCCCcCcCCCCCcEEEEc
Q 026274 68 RFSGANVVELGAGTSLPGLVAAKVGS-NVTLTDDSNRIEVLKNMRRVCEMNKLNCRVMGLTWGFLDASIFDLNPNIILGA 146 (241)
Q Consensus 68 ~~~~~~VLElGcGtGl~sl~la~~g~-~V~~tD~~~~~~~l~~~~~n~~~n~~~~~~~~l~w~~~~~~~~~~~fDlIl~~ 146 (241)
..++.+|||+|||+|..++.+++.|+ +|+++|+++ .+++.+++|+..++.++++...|+.+. +.+||+|+++
T Consensus 47 ~~~~~~vlD~g~G~G~~~~~l~~~~~~~v~~vD~~~--~~~~~a~~~~~~~~~~~~~~~~d~~~~-----~~~~D~v~~~ 119 (207)
T 1wy7_A 47 DIEGKVVADLGAGTGVLSYGALLLGAKEVICVEVDK--EAVDVLIENLGEFKGKFKVFIGDVSEF-----NSRVDIVIMN 119 (207)
T ss_dssp SSTTCEEEEETCTTCHHHHHHHHTTCSEEEEEESCH--HHHHHHHHHTGGGTTSEEEEESCGGGC-----CCCCSEEEEC
T ss_pred CCCcCEEEEeeCCCCHHHHHHHHcCCCEEEEEECCH--HHHHHHHHHHHHcCCCEEEEECchHHc-----CCCCCEEEEc
Confidence 45678999999999999999999976 799999995 799999999998888777777776553 2489999998
Q ss_pred CCcCCC--ccHHHHHHHHHHHhhcCCCeEEEEEeeccCchhHHHHHHHHcCCEEEEE
Q 026274 147 DVFYDA--SAFDDLFATITYLLQSSPGSVFITTYHNRSGHHLIEFLMVKWGLKCVKL 201 (241)
Q Consensus 147 dvly~~--~~~~~ll~~~~~lL~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~i 201 (241)
.+++.. .....+++.+.+++ +++++++.............+++.||++..+
T Consensus 120 ~p~~~~~~~~~~~~l~~~~~~l----~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~ 172 (207)
T 1wy7_A 120 PPFGSQRKHADRPFLLKAFEIS----DVVYSIHLAKPEVRRFIEKFSWEHGFVVTHR 172 (207)
T ss_dssp CCCSSSSTTTTHHHHHHHHHHC----SEEEEEEECCHHHHHHHHHHHHHTTEEEEEE
T ss_pred CCCccccCCchHHHHHHHHHhc----CcEEEEEeCCcCCHHHHHHHHHHCCCeEEEE
Confidence 876654 34456777777775 4555444323333344455667899988876
|
| >3q87_B N6 adenine specific DNA methylase; SAM-methyltransferase, methyltransferase, methylation, trans activator-transferase complex; HET: SAM; 2.00A {Encephalitozoon cuniculi} | Back alignment and structure |
|---|
Probab=99.52 E-value=2.1e-13 Score=108.39 Aligned_cols=132 Identities=10% Similarity=0.007 Sum_probs=93.5
Q ss_pred ccHHHHHHHHHhccCCCCCCeEEEecCCCCHHHHHHHHhCCEEEEEcCCCcHHHHHHHHHHHHHcCCceEEEEeecCCCC
Q 026274 53 PCSVILAEYVWQQRYRFSGANVVELGAGTSLPGLVAAKVGSNVTLTDDSNRIEVLKNMRRVCEMNKLNCRVMGLTWGFLD 132 (241)
Q Consensus 53 ~~s~~L~~~l~~~~~~~~~~~VLElGcGtGl~sl~la~~g~~V~~tD~~~~~~~l~~~~~n~~~n~~~~~~~~l~w~~~~ 132 (241)
+.+..|.+++... ..++.+|||+|||+|.+++.+++.+ +|+++|+++ +|++. ..++++...|+.+.
T Consensus 8 ~~~~~l~~~l~~~--~~~~~~vLD~GcG~G~~~~~l~~~~-~v~gvD~s~--~~~~~--------~~~~~~~~~d~~~~- 73 (170)
T 3q87_B 8 EDTYTLMDALERE--GLEMKIVLDLGTSTGVITEQLRKRN-TVVSTDLNI--RALES--------HRGGNLVRADLLCS- 73 (170)
T ss_dssp HHHHHHHHHHHHH--TCCSCEEEEETCTTCHHHHHHTTTS-EEEEEESCH--HHHHT--------CSSSCEEECSTTTT-
T ss_pred ccHHHHHHHHHhh--cCCCCeEEEeccCccHHHHHHHhcC-cEEEEECCH--HHHhc--------ccCCeEEECChhhh-
Confidence 5566677776442 2456799999999999999999999 999999995 57765 33456677766552
Q ss_pred cCcCCCCCcEEEEcCCcCCCcc---------HHHHHHHHHHHhhcCCCeEEEEEeeccCchhHHHHHHHHcCCEEEEEec
Q 026274 133 ASIFDLNPNIILGADVFYDASA---------FDDLFATITYLLQSSPGSVFITTYHNRSGHHLIEFLMVKWGLKCVKLVD 203 (241)
Q Consensus 133 ~~~~~~~fDlIl~~dvly~~~~---------~~~ll~~~~~lL~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~i~~ 203 (241)
..+.+||+|+++.++++... ...+++.+.+.+ ++|.+++..........+..++++.||+...+..
T Consensus 74 --~~~~~fD~i~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~l---pgG~l~~~~~~~~~~~~l~~~l~~~gf~~~~~~~ 148 (170)
T 3q87_B 74 --INQESVDVVVFNPPYVPDTDDPIIGGGYLGREVIDRFVDAV---TVGMLYLLVIEANRPKEVLARLEERGYGTRILKV 148 (170)
T ss_dssp --BCGGGCSEEEECCCCBTTCCCTTTBCCGGGCHHHHHHHHHC---CSSEEEEEEEGGGCHHHHHHHHHHTTCEEEEEEE
T ss_pred --cccCCCCEEEECCCCccCCccccccCCcchHHHHHHHHhhC---CCCEEEEEEecCCCHHHHHHHHHHCCCcEEEEEe
Confidence 23368999999888775333 245666666666 5666666544444445566677889999988743
|
| >3i9f_A Putative type 11 methyltransferase; structural genomics, PSI-2, protein structure initiative; 2.50A {Sulfolobus solfataricus} | Back alignment and structure |
|---|
Probab=99.52 E-value=2.1e-13 Score=107.50 Aligned_cols=120 Identities=13% Similarity=0.076 Sum_probs=90.9
Q ss_pred CCCCeEEEecCCCCHHHHHHHHhCCEEEEEcCCCcHHHHHHHHHHHHHcCCceEEEEeecCCCCcCcCCCCCcEEEEcCC
Q 026274 69 FSGANVVELGAGTSLPGLVAAKVGSNVTLTDDSNRIEVLKNMRRVCEMNKLNCRVMGLTWGFLDASIFDLNPNIILGADV 148 (241)
Q Consensus 69 ~~~~~VLElGcGtGl~sl~la~~g~~V~~tD~~~~~~~l~~~~~n~~~n~~~~~~~~l~w~~~~~~~~~~~fDlIl~~dv 148 (241)
.++.+|||+|||+|..+..+++.+.+|+++|+++ ++++.++++ ..++++...+ .+..+.+||+|+++.+
T Consensus 16 ~~~~~vLDiG~G~G~~~~~l~~~~~~v~~vD~s~--~~~~~a~~~----~~~v~~~~~d-----~~~~~~~~D~v~~~~~ 84 (170)
T 3i9f_A 16 GKKGVIVDYGCGNGFYCKYLLEFATKLYCIDINV--IALKEVKEK----FDSVITLSDP-----KEIPDNSVDFILFANS 84 (170)
T ss_dssp SCCEEEEEETCTTCTTHHHHHTTEEEEEEECSCH--HHHHHHHHH----CTTSEEESSG-----GGSCTTCEEEEEEESC
T ss_pred CCCCeEEEECCCCCHHHHHHHhhcCeEEEEeCCH--HHHHHHHHh----CCCcEEEeCC-----CCCCCCceEEEEEccc
Confidence 4567999999999999999999877999999995 689888887 3345555544 2334568999999999
Q ss_pred cCCCccHHHHHHHHHHHhhcCCCeEEEEEee-cc-----------CchhHHHHHHHHcCCEEEEEec
Q 026274 149 FYDASAFDDLFATITYLLQSSPGSVFITTYH-NR-----------SGHHLIEFLMVKWGLKCVKLVD 203 (241)
Q Consensus 149 ly~~~~~~~ll~~~~~lL~~~~~~~~~~~~~-~r-----------~~~~~~~~~~~~~g~~~~~i~~ 203 (241)
+++.++...+++.+.++|+ +||.+++... .. .....+..+++ ||+.....+
T Consensus 85 l~~~~~~~~~l~~~~~~L~--pgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~--Gf~~~~~~~ 147 (170)
T 3i9f_A 85 FHDMDDKQHVISEVKRILK--DDGRVIIIDWRKENTGIGPPLSIRMDEKDYMGWFS--NFVVEKRFN 147 (170)
T ss_dssp STTCSCHHHHHHHHHHHEE--EEEEEEEEEECSSCCSSSSCGGGCCCHHHHHHHTT--TEEEEEEEC
T ss_pred hhcccCHHHHHHHHHHhcC--CCCEEEEEEcCccccccCchHhhhcCHHHHHHHHh--CcEEEEccC
Confidence 9999999999999999998 5565555422 21 22333444555 999888743
|
| >3e8s_A Putative SAM dependent methyltransferase; NP_744700.1, structural genomics, joint center for structural genom JCSG; HET: SAH; 2.10A {Pseudomonas putida KT2440} | Back alignment and structure |
|---|
Probab=99.52 E-value=9.2e-14 Score=113.83 Aligned_cols=125 Identities=16% Similarity=0.138 Sum_probs=94.1
Q ss_pred CCCCeEEEecCCCCHHHHHHHHhCCEEEEEcCCCcHHHHHHHHHHHHHcCCceEEEEeecCCCCc-C-cCCCCCcEEEEc
Q 026274 69 FSGANVVELGAGTSLPGLVAAKVGSNVTLTDDSNRIEVLKNMRRVCEMNKLNCRVMGLTWGFLDA-S-IFDLNPNIILGA 146 (241)
Q Consensus 69 ~~~~~VLElGcGtGl~sl~la~~g~~V~~tD~~~~~~~l~~~~~n~~~n~~~~~~~~l~w~~~~~-~-~~~~~fDlIl~~ 146 (241)
.++.+|||+|||+|..+..+++.|++|+++|+++ .+++.++++ ..+.+...++.+... + ....+||+|+++
T Consensus 51 ~~~~~vLdiG~G~G~~~~~l~~~~~~v~~vD~s~--~~~~~a~~~-----~~~~~~~~~~~~~~~~~~~~~~~fD~v~~~ 123 (227)
T 3e8s_A 51 RQPERVLDLGCGEGWLLRALADRGIEAVGVDGDR--TLVDAARAA-----GAGEVHLASYAQLAEAKVPVGKDYDLICAN 123 (227)
T ss_dssp TCCSEEEEETCTTCHHHHHHHTTTCEEEEEESCH--HHHHHHHHT-----CSSCEEECCHHHHHTTCSCCCCCEEEEEEE
T ss_pred CCCCEEEEeCCCCCHHHHHHHHCCCEEEEEcCCH--HHHHHHHHh-----cccccchhhHHhhcccccccCCCccEEEEC
Confidence 3568999999999999999999999999999995 689888876 334455555443311 1 223469999999
Q ss_pred CCcCCCccHHHHHHHHHHHhhcCCCeEEEEEeec-------------------------------cCchhHHHHHHHHcC
Q 026274 147 DVFYDASAFDDLFATITYLLQSSPGSVFITTYHN-------------------------------RSGHHLIEFLMVKWG 195 (241)
Q Consensus 147 dvly~~~~~~~ll~~~~~lL~~~~~~~~~~~~~~-------------------------------r~~~~~~~~~~~~~g 195 (241)
.+++ ..+...+++.+.++|+ |||.+++.... ..+......++++.|
T Consensus 124 ~~l~-~~~~~~~l~~~~~~L~--pgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aG 200 (227)
T 3e8s_A 124 FALL-HQDIIELLSAMRTLLV--PGGALVIQTLHPWSVADGDYQDGWREESFAGFAGDWQPMPWYFRTLASWLNALDMAG 200 (227)
T ss_dssp SCCC-SSCCHHHHHHHHHTEE--EEEEEEEEECCTTTTCTTCCSCEEEEECCTTSSSCCCCEEEEECCHHHHHHHHHHTT
T ss_pred chhh-hhhHHHHHHHHHHHhC--CCeEEEEEecCccccCccccccccchhhhhccccCcccceEEEecHHHHHHHHHHcC
Confidence 9999 8899999999999998 56766654321 113345566789999
Q ss_pred CEEEEEec
Q 026274 196 LKCVKLVD 203 (241)
Q Consensus 196 ~~~~~i~~ 203 (241)
|++..+.+
T Consensus 201 f~~~~~~~ 208 (227)
T 3e8s_A 201 LRLVSLQE 208 (227)
T ss_dssp EEEEEEEC
T ss_pred CeEEEEec
Confidence 99998854
|
| >3d2l_A SAM-dependent methyltransferase; ZP_00538691.1, structural G joint center for structural genomics, JCSG; HET: MSE; 1.90A {Exiguobacterium sibiricum 255-15} | Back alignment and structure |
|---|
Probab=99.52 E-value=2.7e-13 Score=112.50 Aligned_cols=109 Identities=19% Similarity=0.186 Sum_probs=85.4
Q ss_pred HHHHHHhccCCCCCCeEEEecCCCCHHHHHHHHhCCEEEEEcCCCcHHHHHHHHHHHHHcCCceEEEEeecCCCCcCcCC
Q 026274 58 LAEYVWQQRYRFSGANVVELGAGTSLPGLVAAKVGSNVTLTDDSNRIEVLKNMRRVCEMNKLNCRVMGLTWGFLDASIFD 137 (241)
Q Consensus 58 L~~~l~~~~~~~~~~~VLElGcGtGl~sl~la~~g~~V~~tD~~~~~~~l~~~~~n~~~n~~~~~~~~l~w~~~~~~~~~ 137 (241)
+.+++.... .++.+|||+|||+|..+..+++. .+|+++|+++ ++++.+++++..++.++++...+..+.. ..
T Consensus 23 ~~~~~~~~~--~~~~~vLdiG~G~G~~~~~l~~~-~~v~~vD~s~--~~~~~a~~~~~~~~~~~~~~~~d~~~~~---~~ 94 (243)
T 3d2l_A 23 WVAWVLEQV--EPGKRIADIGCGTGTATLLLADH-YEVTGVDLSE--EMLEIAQEKAMETNRHVDFWVQDMRELE---LP 94 (243)
T ss_dssp HHHHHHHHS--CTTCEEEEESCTTCHHHHHHTTT-SEEEEEESCH--HHHHHHHHHHHHTTCCCEEEECCGGGCC---CS
T ss_pred HHHHHHHHc--CCCCeEEEecCCCCHHHHHHhhC-CeEEEEECCH--HHHHHHHHhhhhcCCceEEEEcChhhcC---CC
Confidence 334444432 24579999999999999999988 8999999995 7999999999887777888877766542 23
Q ss_pred CCCcEEEEc-CCcCCC---ccHHHHHHHHHHHhhcCCCeEEEE
Q 026274 138 LNPNIILGA-DVFYDA---SAFDDLFATITYLLQSSPGSVFIT 176 (241)
Q Consensus 138 ~~fDlIl~~-dvly~~---~~~~~ll~~~~~lL~~~~~~~~~~ 176 (241)
.+||+|++. +++++. .....+++.+.++|+ |||.+++
T Consensus 95 ~~fD~v~~~~~~~~~~~~~~~~~~~l~~~~~~L~--pgG~l~~ 135 (243)
T 3d2l_A 95 EPVDAITILCDSLNYLQTEADVKQTFDSAARLLT--DGGKLLF 135 (243)
T ss_dssp SCEEEEEECTTGGGGCCSHHHHHHHHHHHHHHEE--EEEEEEE
T ss_pred CCcCEEEEeCCchhhcCCHHHHHHHHHHHHHhcC--CCeEEEE
Confidence 689999987 488776 567788999999998 5665554
|
| >3g89_A Ribosomal RNA small subunit methyltransferase G; 16S rRNA methyltransferase, translation, cytoplasm, rRNA processing; HET: HIC SAM AMP; 1.50A {Thermus thermophilus} PDB: 3g88_A* 3g8a_A* 3g8b_A* | Back alignment and structure |
|---|
Probab=99.52 E-value=2.8e-13 Score=114.52 Aligned_cols=145 Identities=15% Similarity=0.115 Sum_probs=102.2
Q ss_pred CCCCeEEEecCCCCHHHHHHHHh--CCEEEEEcCCCcHHHHHHHHHHHHHcCC-ceEEEEeecCCCCcC-cCCCCCcEEE
Q 026274 69 FSGANVVELGAGTSLPGLVAAKV--GSNVTLTDDSNRIEVLKNMRRVCEMNKL-NCRVMGLTWGFLDAS-IFDLNPNIIL 144 (241)
Q Consensus 69 ~~~~~VLElGcGtGl~sl~la~~--g~~V~~tD~~~~~~~l~~~~~n~~~n~~-~~~~~~l~w~~~~~~-~~~~~fDlIl 144 (241)
..+.+|||+|||+|.+++.+|.. +++|+++|+++ ++++.+++|++.+++ ++++...++.+.... ....+||+|+
T Consensus 79 ~~~~~vLDiG~G~G~~~i~la~~~~~~~v~~vD~s~--~~~~~a~~~~~~~~l~~v~~~~~d~~~~~~~~~~~~~fD~I~ 156 (249)
T 3g89_A 79 QGPLRVLDLGTGAGFPGLPLKIVRPELELVLVDATR--KKVAFVERAIEVLGLKGARALWGRAEVLAREAGHREAYARAV 156 (249)
T ss_dssp CSSCEEEEETCTTTTTHHHHHHHCTTCEEEEEESCH--HHHHHHHHHHHHHTCSSEEEEECCHHHHTTSTTTTTCEEEEE
T ss_pred CCCCEEEEEcCCCCHHHHHHHHHCCCCEEEEEECCH--HHHHHHHHHHHHhCCCceEEEECcHHHhhcccccCCCceEEE
Confidence 35789999999999999999987 56999999995 799999999999887 478887776654321 2246899999
Q ss_pred EcCCcCCCccHHHHHHHHHHHhhcCCCeEEEEEeeccCchh--HHHHHHHHcCCEEEEEecCCCCCCcccccccCCCeEE
Q 026274 145 GADVFYDASAFDDLFATITYLLQSSPGSVFITTYHNRSGHH--LIEFLMVKWGLKCVKLVDGFSFLPHYKARELNGNIQL 222 (241)
Q Consensus 145 ~~dvly~~~~~~~ll~~~~~lL~~~~~~~~~~~~~~r~~~~--~~~~~~~~~g~~~~~i~~~~~~~p~~~~~~~~~~~~l 222 (241)
+..+ .....+++.+.++|+ +||.+++........+ .....+++.|+....+... ..+ .......+
T Consensus 157 s~a~----~~~~~ll~~~~~~Lk--pgG~l~~~~g~~~~~e~~~~~~~l~~~G~~~~~~~~~-~~p------~~~~~R~l 223 (249)
T 3g89_A 157 ARAV----APLCVLSELLLPFLE--VGGAAVAMKGPRVEEELAPLPPALERLGGRLGEVLAL-QLP------LSGEARHL 223 (249)
T ss_dssp EESS----CCHHHHHHHHGGGEE--EEEEEEEEECSCCHHHHTTHHHHHHHHTEEEEEEEEE-ECT------TTCCEEEE
T ss_pred ECCc----CCHHHHHHHHHHHcC--CCeEEEEEeCCCcHHHHHHHHHHHHHcCCeEEEEEEe-eCC------CCCCcEEE
Confidence 8643 567899999999998 5676655432222222 2233457889998887432 111 22335566
Q ss_pred EEEEec
Q 026274 223 AEIVLN 228 (241)
Q Consensus 223 ~~i~~~ 228 (241)
+.+.+.
T Consensus 224 ~~~~k~ 229 (249)
T 3g89_A 224 VVLEKT 229 (249)
T ss_dssp EEEEEC
T ss_pred EEEEeC
Confidence 666543
|
| >3iv6_A Putative Zn-dependent alcohol dehydrogenase; alpha/beta fold, rossmann-fold, structural genomics, PSI-2, structure initiative; HET: SAM; 2.70A {Rhodobacter sphaeroides} | Back alignment and structure |
|---|
Probab=99.52 E-value=1.5e-13 Score=116.99 Aligned_cols=111 Identities=14% Similarity=0.049 Sum_probs=83.4
Q ss_pred HHHHhccCCCCCCeEEEecCCCCHHHHHHHHhCCEEEEEcCCCcHHHHHHHHHHHHHcCCceEEEEeecCCCCc---CcC
Q 026274 60 EYVWQQRYRFSGANVVELGAGTSLPGLVAAKVGSNVTLTDDSNRIEVLKNMRRVCEMNKLNCRVMGLTWGFLDA---SIF 136 (241)
Q Consensus 60 ~~l~~~~~~~~~~~VLElGcGtGl~sl~la~~g~~V~~tD~~~~~~~l~~~~~n~~~n~~~~~~~~l~w~~~~~---~~~ 136 (241)
+.+.......++.+|||||||+|..++.+++.|++|+++|+|+ +|++.+++++..+. ...+|.+... ...
T Consensus 35 ~~il~~l~l~~g~~VLDlGcGtG~~a~~La~~g~~V~gvD~S~--~ml~~Ar~~~~~~~-----v~~~~~~~~~~~~~~~ 107 (261)
T 3iv6_A 35 ENDIFLENIVPGSTVAVIGASTRFLIEKALERGASVTVFDFSQ--RMCDDLAEALADRC-----VTIDLLDITAEIPKEL 107 (261)
T ss_dssp HHHHHTTTCCTTCEEEEECTTCHHHHHHHHHTTCEEEEEESCH--HHHHHHHHHTSSSC-----CEEEECCTTSCCCGGG
T ss_pred HHHHHhcCCCCcCEEEEEeCcchHHHHHHHhcCCEEEEEECCH--HHHHHHHHHHHhcc-----ceeeeeeccccccccc
Confidence 4444444455788999999999999999999999999999995 79999999887652 2344544322 122
Q ss_pred CCCCcEEEEcCCcCCC--ccHHHHHHHHHHHhhcCCCeEEEEEeec
Q 026274 137 DLNPNIILGADVFYDA--SAFDDLFATITYLLQSSPGSVFITTYHN 180 (241)
Q Consensus 137 ~~~fDlIl~~dvly~~--~~~~~ll~~~~~lL~~~~~~~~~~~~~~ 180 (241)
+.+||+|+++.++++. +....+++.+.++| |||.+++++..
T Consensus 108 ~~~fD~Vv~~~~l~~~~~~~~~~~l~~l~~lL---PGG~l~lS~~~ 150 (261)
T 3iv6_A 108 AGHFDFVLNDRLINRFTTEEARRACLGMLSLV---GSGTVRASVKL 150 (261)
T ss_dssp TTCCSEEEEESCGGGSCHHHHHHHHHHHHHHH---TTSEEEEEEEB
T ss_pred CCCccEEEEhhhhHhCCHHHHHHHHHHHHHhC---cCcEEEEEecc
Confidence 4689999999999764 46677899999998 45666666544
|
| >2fca_A TRNA (guanine-N(7)-)-methyltransferase; 2.10A {Bacillus subtilis} SCOP: c.66.1.53 | Back alignment and structure |
|---|
Probab=99.52 E-value=4.9e-13 Score=110.12 Aligned_cols=129 Identities=11% Similarity=0.001 Sum_probs=92.2
Q ss_pred CCCeEEEecCCCCHHHHHHHHh--CCEEEEEcCCCcHHHHHHHHHHHHHcCC-ceEEEEeecCCCCcCcCCCCCcEEEEc
Q 026274 70 SGANVVELGAGTSLPGLVAAKV--GSNVTLTDDSNRIEVLKNMRRVCEMNKL-NCRVMGLTWGFLDASIFDLNPNIILGA 146 (241)
Q Consensus 70 ~~~~VLElGcGtGl~sl~la~~--g~~V~~tD~~~~~~~l~~~~~n~~~n~~-~~~~~~l~w~~~~~~~~~~~fDlIl~~ 146 (241)
.+.+|||||||+|..++.+|+. +.+|+++|+++ ++++.+++|+..++. ++.+...|+.+......+.+||.|++.
T Consensus 38 ~~~~vLDiGcG~G~~~~~la~~~p~~~v~giD~s~--~~l~~a~~~~~~~~~~nv~~~~~d~~~l~~~~~~~~~d~v~~~ 115 (213)
T 2fca_A 38 DNPIHIEVGTGKGQFISGMAKQNPDINYIGIELFK--SVIVTAVQKVKDSEAQNVKLLNIDADTLTDVFEPGEVKRVYLN 115 (213)
T ss_dssp CCCEEEEECCTTSHHHHHHHHHCTTSEEEEECSCH--HHHHHHHHHHHHSCCSSEEEECCCGGGHHHHCCTTSCCEEEEE
T ss_pred CCceEEEEecCCCHHHHHHHHHCCCCCEEEEEech--HHHHHHHHHHHHcCCCCEEEEeCCHHHHHhhcCcCCcCEEEEE
Confidence 4678999999999999999987 56999999995 799999999998876 577777776542111234579999865
Q ss_pred CCcCCCc--------cHHHHHHHHHHHhhcCCCeEEEEEeeccCchhHHHHHHHHcCCEEEEEe
Q 026274 147 DVFYDAS--------AFDDLFATITYLLQSSPGSVFITTYHNRSGHHLIEFLMVKWGLKCVKLV 202 (241)
Q Consensus 147 dvly~~~--------~~~~ll~~~~~lL~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~i~ 202 (241)
-+-.+.. ....+++.+.++|+ |||.+++..............+.+.||....+.
T Consensus 116 ~~~p~~~~~~~~~rl~~~~~l~~~~~~Lk--pgG~l~~~td~~~~~~~~~~~~~~~g~~~~~~~ 177 (213)
T 2fca_A 116 FSDPWPKKRHEKRRLTYSHFLKKYEEVMG--KGGSIHFKTDNRGLFEYSLKSFSEYGLLLTYVS 177 (213)
T ss_dssp SCCCCCSGGGGGGSTTSHHHHHHHHHHHT--TSCEEEEEESCHHHHHHHHHHHHHHTCEEEEEE
T ss_pred CCCCCcCccccccccCcHHHHHHHHHHcC--CCCEEEEEeCCHHHHHHHHHHHHHCCCcccccc
Confidence 3322211 14789999999998 667777665443333333444567799877663
|
| >3g2m_A PCZA361.24; SAM-dependent methyltransferase, glycopeptide antibiotics biosynthesis, structural genomics; 2.00A {Amycolatopsis orientalis} PDB: 3g2o_A* 3g2p_A* 3g2q_A* | Back alignment and structure |
|---|
Probab=99.51 E-value=1.8e-13 Score=117.94 Aligned_cols=101 Identities=20% Similarity=0.255 Sum_probs=82.1
Q ss_pred CCCeEEEecCCCCHHHHHHHHhCCEEEEEcCCCcHHHHHHHHHHHHHcC----CceEEEEeecCCCCcCcCCCCCcEEEE
Q 026274 70 SGANVVELGAGTSLPGLVAAKVGSNVTLTDDSNRIEVLKNMRRVCEMNK----LNCRVMGLTWGFLDASIFDLNPNIILG 145 (241)
Q Consensus 70 ~~~~VLElGcGtGl~sl~la~~g~~V~~tD~~~~~~~l~~~~~n~~~n~----~~~~~~~l~w~~~~~~~~~~~fDlIl~ 145 (241)
++.+|||||||+|..+..+++.|.+|+++|+++ .+++.+++++..++ .++++...|+.+.. .+.+||+|++
T Consensus 82 ~~~~vLDlGcG~G~~~~~l~~~~~~v~gvD~s~--~~~~~a~~~~~~~~~~~~~~v~~~~~d~~~~~---~~~~fD~v~~ 156 (299)
T 3g2m_A 82 VSGPVLELAAGMGRLTFPFLDLGWEVTALELST--SVLAAFRKRLAEAPADVRDRCTLVQGDMSAFA---LDKRFGTVVI 156 (299)
T ss_dssp CCSCEEEETCTTTTTHHHHHTTTCCEEEEESCH--HHHHHHHHHHHTSCHHHHTTEEEEECBTTBCC---CSCCEEEEEE
T ss_pred CCCcEEEEeccCCHHHHHHHHcCCeEEEEECCH--HHHHHHHHHHhhcccccccceEEEeCchhcCC---cCCCcCEEEE
Confidence 344899999999999999999999999999995 79999999998776 56888888877642 2568998886
Q ss_pred c-CCcCCCc--cHHHHHHHHHHHhhcCCCeEEEEE
Q 026274 146 A-DVFYDAS--AFDDLFATITYLLQSSPGSVFITT 177 (241)
Q Consensus 146 ~-dvly~~~--~~~~ll~~~~~lL~~~~~~~~~~~ 177 (241)
+ .++++.. ....+++.+.++|+ |||.+++.
T Consensus 157 ~~~~~~~~~~~~~~~~l~~~~~~L~--pgG~l~~~ 189 (299)
T 3g2m_A 157 SSGSINELDEADRRGLYASVREHLE--PGGKFLLS 189 (299)
T ss_dssp CHHHHTTSCHHHHHHHHHHHHHHEE--EEEEEEEE
T ss_pred CCcccccCCHHHHHHHHHHHHHHcC--CCcEEEEE
Confidence 5 5566554 46899999999998 56666654
|
| >3ccf_A Cyclopropane-fatty-acyl-phospholipid synthase; YP_321342.1, putative methyltransferase; 1.90A {Anabaena variabilis atcc 29413} | Back alignment and structure |
|---|
Probab=99.51 E-value=1.3e-13 Score=117.56 Aligned_cols=100 Identities=17% Similarity=0.211 Sum_probs=82.5
Q ss_pred CCCCeEEEecCCCCHHHHHHHHhCCEEEEEcCCCcHHHHHHHHHHHHHcCCceEEEEeecCCCCcCcCCCCCcEEEEcCC
Q 026274 69 FSGANVVELGAGTSLPGLVAAKVGSNVTLTDDSNRIEVLKNMRRVCEMNKLNCRVMGLTWGFLDASIFDLNPNIILGADV 148 (241)
Q Consensus 69 ~~~~~VLElGcGtGl~sl~la~~g~~V~~tD~~~~~~~l~~~~~n~~~n~~~~~~~~l~w~~~~~~~~~~~fDlIl~~dv 148 (241)
.++.+|||+|||+|..+..+++.+++|+++|+++ +|++.++++. .++.+...+..+.. .+.+||+|+++.+
T Consensus 56 ~~~~~vLDiGcG~G~~~~~l~~~~~~v~gvD~s~--~~~~~a~~~~----~~~~~~~~d~~~~~---~~~~fD~v~~~~~ 126 (279)
T 3ccf_A 56 QPGEFILDLGCGTGQLTEKIAQSGAEVLGTDNAA--TMIEKARQNY----PHLHFDVADARNFR---VDKPLDAVFSNAM 126 (279)
T ss_dssp CTTCEEEEETCTTSHHHHHHHHTTCEEEEEESCH--HHHHHHHHHC----TTSCEEECCTTTCC---CSSCEEEEEEESC
T ss_pred CCCCEEEEecCCCCHHHHHHHhCCCeEEEEECCH--HHHHHHHhhC----CCCEEEECChhhCC---cCCCcCEEEEcch
Confidence 4678999999999999999999888999999995 6998888765 34566777766532 2468999999999
Q ss_pred cCCCccHHHHHHHHHHHhhcCCCeEEEEEee
Q 026274 149 FYDASAFDDLFATITYLLQSSPGSVFITTYH 179 (241)
Q Consensus 149 ly~~~~~~~ll~~~~~lL~~~~~~~~~~~~~ 179 (241)
+++..+...+++.+.++|+ |||.+++...
T Consensus 127 l~~~~d~~~~l~~~~~~Lk--pgG~l~~~~~ 155 (279)
T 3ccf_A 127 LHWVKEPEAAIASIHQALK--SGGRFVAEFG 155 (279)
T ss_dssp GGGCSCHHHHHHHHHHHEE--EEEEEEEEEE
T ss_pred hhhCcCHHHHHHHHHHhcC--CCcEEEEEec
Confidence 9999999999999999999 5676666543
|
| >1xdz_A Methyltransferase GIDB; MCSG, protein structure initiative, structural genomics, methyltransferase fold, PSI; 1.60A {Bacillus subtilis} SCOP: c.66.1.20 | Back alignment and structure |
|---|
Probab=99.51 E-value=2.4e-13 Score=113.66 Aligned_cols=124 Identities=15% Similarity=0.156 Sum_probs=92.5
Q ss_pred CCCeEEEecCCCCHHHHHHHHh--CCEEEEEcCCCcHHHHHHHHHHHHHcCC-ceEEEEeecCCCCc-CcCCCCCcEEEE
Q 026274 70 SGANVVELGAGTSLPGLVAAKV--GSNVTLTDDSNRIEVLKNMRRVCEMNKL-NCRVMGLTWGFLDA-SIFDLNPNIILG 145 (241)
Q Consensus 70 ~~~~VLElGcGtGl~sl~la~~--g~~V~~tD~~~~~~~l~~~~~n~~~n~~-~~~~~~l~w~~~~~-~~~~~~fDlIl~ 145 (241)
++.+|||+|||+|..++.+++. +.+|+++|+++ ++++.+++|+..++. ++++...++.+... ...+.+||+|++
T Consensus 70 ~~~~vLDiG~G~G~~~~~la~~~~~~~v~~vD~s~--~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~fD~V~~ 147 (240)
T 1xdz_A 70 QVNTICDVGAGAGFPSLPIKICFPHLHVTIVDSLN--KRITFLEKLSEALQLENTTFCHDRAETFGQRKDVRESYDIVTA 147 (240)
T ss_dssp GCCEEEEECSSSCTTHHHHHHHCTTCEEEEEESCH--HHHHHHHHHHHHHTCSSEEEEESCHHHHTTCTTTTTCEEEEEE
T ss_pred CCCEEEEecCCCCHHHHHHHHhCCCCEEEEEeCCH--HHHHHHHHHHHHcCCCCEEEEeccHHHhcccccccCCccEEEE
Confidence 6789999999999999999964 56999999995 799999999998886 57777776654321 112458999998
Q ss_pred cCCcCCCccHHHHHHHHHHHhhcCCCeEEEEEeeccCchh--HHHHHHHHcCCEEEEE
Q 026274 146 ADVFYDASAFDDLFATITYLLQSSPGSVFITTYHNRSGHH--LIEFLMVKWGLKCVKL 201 (241)
Q Consensus 146 ~dvly~~~~~~~ll~~~~~lL~~~~~~~~~~~~~~r~~~~--~~~~~~~~~g~~~~~i 201 (241)
..+ .+...+++.+.++|+ +||.+++......... .....++++||....+
T Consensus 148 ~~~----~~~~~~l~~~~~~Lk--pgG~l~~~~g~~~~~~~~~~~~~l~~~g~~~~~~ 199 (240)
T 1xdz_A 148 RAV----ARLSVLSELCLPLVK--KNGLFVALKAASAEEELNAGKKAITTLGGELENI 199 (240)
T ss_dssp ECC----SCHHHHHHHHGGGEE--EEEEEEEEECC-CHHHHHHHHHHHHHTTEEEEEE
T ss_pred ecc----CCHHHHHHHHHHhcC--CCCEEEEEeCCCchHHHHHHHHHHHHcCCeEeEE
Confidence 763 578899999999998 6677666533332222 1233467889988776
|
| >1ws6_A Methyltransferase; structural genomics, riken structural genomics/proteomics initiative, RSGI; 2.50A {Thermus thermophilus} SCOP: c.66.1.46 | Back alignment and structure |
|---|
Probab=99.51 E-value=1.4e-14 Score=113.93 Aligned_cols=126 Identities=17% Similarity=0.213 Sum_probs=92.0
Q ss_pred eccHHHHHHHHHhccCC-C-CCCeEEEecCCCCHHHHHHHHhCCEEEEEcCCCcHHHHHHHHHHHHHcCCceEEEEeecC
Q 026274 52 WPCSVILAEYVWQQRYR-F-SGANVVELGAGTSLPGLVAAKVGSNVTLTDDSNRIEVLKNMRRVCEMNKLNCRVMGLTWG 129 (241)
Q Consensus 52 W~~s~~L~~~l~~~~~~-~-~~~~VLElGcGtGl~sl~la~~g~~V~~tD~~~~~~~l~~~~~n~~~n~~~~~~~~l~w~ 129 (241)
.+....+.+.+...... . ++.+|||+|||+|..++.+++.+++|+++|+++ ++++.+++|+..++.++++...++.
T Consensus 21 ~~~~~~~~~~~~~~~~~~~~~~~~vLD~GcG~G~~~~~l~~~~~~v~~vD~~~--~~~~~a~~~~~~~~~~~~~~~~d~~ 98 (171)
T 1ws6_A 21 RPSPVRLRKALFDYLRLRYPRRGRFLDPFAGSGAVGLEAASEGWEAVLVEKDP--EAVRLLKENVRRTGLGARVVALPVE 98 (171)
T ss_dssp CCCCHHHHHHHHHHHHHHCTTCCEEEEETCSSCHHHHHHHHTTCEEEEECCCH--HHHHHHHHHHHHHTCCCEEECSCHH
T ss_pred CCCHHHHHHHHHHHHHhhccCCCeEEEeCCCcCHHHHHHHHCCCeEEEEeCCH--HHHHHHHHHHHHcCCceEEEeccHH
Confidence 34444444444432221 2 678999999999999999999999999999995 7999999999988877777776665
Q ss_pred CCCcCc--CCCCCcEEEEcCCcCCCccHHHHHHHHH--HHhhcCCCeEEEEEeeccCc
Q 026274 130 FLDASI--FDLNPNIILGADVFYDASAFDDLFATIT--YLLQSSPGSVFITTYHNRSG 183 (241)
Q Consensus 130 ~~~~~~--~~~~fDlIl~~dvly~~~~~~~ll~~~~--~lL~~~~~~~~~~~~~~r~~ 183 (241)
+..... ...+||+|+++.+++ ...+.+++.+. ++|+ ++|.+++....+..
T Consensus 99 ~~~~~~~~~~~~~D~i~~~~~~~--~~~~~~~~~~~~~~~L~--~gG~~~~~~~~~~~ 152 (171)
T 1ws6_A 99 VFLPEAKAQGERFTVAFMAPPYA--MDLAALFGELLASGLVE--AGGLYVLQHPKDLY 152 (171)
T ss_dssp HHHHHHHHTTCCEEEEEECCCTT--SCTTHHHHHHHHHTCEE--EEEEEEEEEETTSC
T ss_pred HHHHhhhccCCceEEEEECCCCc--hhHHHHHHHHHhhcccC--CCcEEEEEeCCccC
Confidence 421111 123799999987754 66777888887 8888 67777777665544
|
| >3orh_A Guanidinoacetate N-methyltransferase; structura genomics, structural genomics consortium, SGC; HET: SAH; 1.86A {Homo sapiens} PDB: 1xcj_A* 1xcl_A* 1p1c_A* 1p1b_A* 1khh_A* | Back alignment and structure |
|---|
Probab=99.51 E-value=1.4e-14 Score=121.26 Aligned_cols=119 Identities=17% Similarity=0.220 Sum_probs=92.3
Q ss_pred EEeccHH--HHHHHHHhccCCCCCCeEEEecCCCCHHHHHHHHhC-CEEEEEcCCCcHHHHHHHHHHHHHcCCceEEEEe
Q 026274 50 FVWPCSV--ILAEYVWQQRYRFSGANVVELGAGTSLPGLVAAKVG-SNVTLTDDSNRIEVLKNMRRVCEMNKLNCRVMGL 126 (241)
Q Consensus 50 ~~W~~s~--~L~~~l~~~~~~~~~~~VLElGcGtGl~sl~la~~g-~~V~~tD~~~~~~~l~~~~~n~~~n~~~~~~~~l 126 (241)
.-|+..+ .+++.+ ..+|.+|||||||+|..+..+++.+ ++|+++|+++ ++++.++++....+.++++...
T Consensus 43 ~~we~~~m~~~a~~~-----~~~G~rVLdiG~G~G~~~~~~~~~~~~~v~~id~~~--~~~~~a~~~~~~~~~~~~~~~~ 115 (236)
T 3orh_A 43 ERWETPYMHALAAAA-----SSKGGRVLEVGFGMAIAASKVQEAPIDEHWIIECND--GVFQRLRDWAPRQTHKVIPLKG 115 (236)
T ss_dssp EGGGHHHHHHHHHHH-----TTTCEEEEEECCTTSHHHHHHTTSCEEEEEEEECCH--HHHHHHHHHGGGCSSEEEEEES
T ss_pred HHHHHHHHHHHHHhh-----ccCCCeEEEECCCccHHHHHHHHhCCcEEEEEeCCH--HHHHHHHHHHhhCCCceEEEee
Confidence 4587643 333333 2467899999999999999998864 5899999995 7999999999988888888888
Q ss_pred ecCCCCcCcCCCCCcEEEE-----cCCcCCCccHHHHHHHHHHHhhcCCCeEEEEE
Q 026274 127 TWGFLDASIFDLNPNIILG-----ADVFYDASAFDDLFATITYLLQSSPGSVFITT 177 (241)
Q Consensus 127 ~w~~~~~~~~~~~fDlIl~-----~dvly~~~~~~~ll~~~~~lL~~~~~~~~~~~ 177 (241)
+|.+......+.+||.|+. ....++..+.+.+++.+.++|| |||+|.+.
T Consensus 116 ~a~~~~~~~~~~~FD~i~~D~~~~~~~~~~~~~~~~~~~e~~rvLk--PGG~l~f~ 169 (236)
T 3orh_A 116 LWEDVAPTLPDGHFDGILYDTYPLSEETWHTHQFNFIKNHAFRLLK--PGGVLTYC 169 (236)
T ss_dssp CHHHHGGGSCTTCEEEEEECCCCCBGGGTTTHHHHHHHHTHHHHEE--EEEEEEEC
T ss_pred hHHhhcccccccCCceEEEeeeecccchhhhcchhhhhhhhhheeC--CCCEEEEE
Confidence 8876554555678999974 2334456678899999999999 67777654
|
| >3thr_A Glycine N-methyltransferase; GNMT, folate, methyltransferase binding, liver cytosol, transferase-transferase inhibitor C; HET: C2F TAM; 2.00A {Rattus norvegicus} SCOP: c.66.1.5 PDB: 3ths_A* 1xva_A* 1d2c_A 1kia_A* 1nbh_A* 1bhj_A* 2idj_A 2idk_A* 1d2g_A 1d2h_A* 1nbi_A* 1r8x_A 1r8y_A 1r74_A* 2azt_A* | Back alignment and structure |
|---|
Probab=99.51 E-value=7e-14 Score=119.76 Aligned_cols=116 Identities=15% Similarity=0.211 Sum_probs=88.8
Q ss_pred HHHHHhccCCCCCCeEEEecCCCCHHHHHHHHhCCEEEEEcCCCcHHHHHHHHHHHHHcCC-----ceEEEEeecCCCCc
Q 026274 59 AEYVWQQRYRFSGANVVELGAGTSLPGLVAAKVGSNVTLTDDSNRIEVLKNMRRVCEMNKL-----NCRVMGLTWGFLDA 133 (241)
Q Consensus 59 ~~~l~~~~~~~~~~~VLElGcGtGl~sl~la~~g~~V~~tD~~~~~~~l~~~~~n~~~n~~-----~~~~~~l~w~~~~~ 133 (241)
.+++.......++.+|||+|||+|..+..+++.|++|+++|+++ ++++.+++++...+. ++.+...++.+...
T Consensus 46 ~~~l~~~l~~~~~~~vLDiGcG~G~~~~~l~~~~~~v~gvD~s~--~~l~~a~~~~~~~~~~~~~~~~~~~~~d~~~~~~ 123 (293)
T 3thr_A 46 KAWLLGLLRQHGCHRVLDVACGTGVDSIMLVEEGFSVTSVDASD--KMLKYALKERWNRRKEPAFDKWVIEEANWLTLDK 123 (293)
T ss_dssp HHHHHHHHHHTTCCEEEETTCTTSHHHHHHHHTTCEEEEEESCH--HHHHHHHHHHHHTTTSHHHHTCEEEECCGGGHHH
T ss_pred HHHHHHHhcccCCCEEEEecCCCCHHHHHHHHCCCeEEEEECCH--HHHHHHHHhhhhcccccccceeeEeecChhhCcc
Confidence 34444433334678999999999999999999999999999995 799999988754432 34556666654321
Q ss_pred C-cCCCCCcEEEEc-CCcCCCcc-------HHHHHHHHHHHhhcCCCeEEEEEe
Q 026274 134 S-IFDLNPNIILGA-DVFYDASA-------FDDLFATITYLLQSSPGSVFITTY 178 (241)
Q Consensus 134 ~-~~~~~fDlIl~~-dvly~~~~-------~~~ll~~~~~lL~~~~~~~~~~~~ 178 (241)
. ..+.+||+|++. ++++|..+ ...+++.+.++|+ |||.+++..
T Consensus 124 ~~~~~~~fD~V~~~g~~l~~~~~~~~~~~~~~~~l~~~~~~Lk--pgG~l~~~~ 175 (293)
T 3thr_A 124 DVPAGDGFDAVICLGNSFAHLPDSKGDQSEHRLALKNIASMVR--PGGLLVIDH 175 (293)
T ss_dssp HSCCTTCEEEEEECTTCGGGSCCSSSSSHHHHHHHHHHHHTEE--EEEEEEEEE
T ss_pred ccccCCCeEEEEEcChHHhhcCccccCHHHHHHHHHHHHHHcC--CCeEEEEEe
Confidence 1 234689999998 89999888 9999999999998 677777664
|
| >2fhp_A Methylase, putative; alpha-beta-alpha sandwich, structural genomics, PSI, protein structure initiative; HET: MSE; 1.60A {Enterococcus faecalis} SCOP: c.66.1.46 | Back alignment and structure |
|---|
Probab=99.50 E-value=3.8e-14 Score=113.16 Aligned_cols=125 Identities=14% Similarity=0.154 Sum_probs=92.8
Q ss_pred ccHHHHHHHHHhcc-CCCCCCeEEEecCCCCHHHHHHHHhCC-EEEEEcCCCcHHHHHHHHHHHHHcCC--ceEEEEeec
Q 026274 53 PCSVILAEYVWQQR-YRFSGANVVELGAGTSLPGLVAAKVGS-NVTLTDDSNRIEVLKNMRRVCEMNKL--NCRVMGLTW 128 (241)
Q Consensus 53 ~~s~~L~~~l~~~~-~~~~~~~VLElGcGtGl~sl~la~~g~-~V~~tD~~~~~~~l~~~~~n~~~n~~--~~~~~~l~w 128 (241)
|....+.+.+.... ...++.+|||+|||+|..++.+++.++ +|+++|+++ ++++.+++|+..++. ++++...|+
T Consensus 26 p~~~~~~~~~~~~l~~~~~~~~vLD~GcG~G~~~~~~~~~~~~~v~~vD~~~--~~~~~a~~~~~~~~~~~~~~~~~~d~ 103 (187)
T 2fhp_A 26 PTTDKVKESIFNMIGPYFDGGMALDLYSGSGGLAIEAVSRGMDKSICIEKNF--AALKVIKENIAITKEPEKFEVRKMDA 103 (187)
T ss_dssp CCCHHHHHHHHHHHCSCCSSCEEEETTCTTCHHHHHHHHTTCSEEEEEESCH--HHHHHHHHHHHHHTCGGGEEEEESCH
T ss_pred cCHHHHHHHHHHHHHhhcCCCCEEEeCCccCHHHHHHHHcCCCEEEEEECCH--HHHHHHHHHHHHhCCCcceEEEECcH
Confidence 44555555555433 235778999999999999999888874 999999995 799999999999886 477777776
Q ss_pred CCCCcCc--CCCCCcEEEEcCCcCCCccHHHHHHHH--HHHhhcCCCeEEEEEeeccC
Q 026274 129 GFLDASI--FDLNPNIILGADVFYDASAFDDLFATI--TYLLQSSPGSVFITTYHNRS 182 (241)
Q Consensus 129 ~~~~~~~--~~~~fDlIl~~dvly~~~~~~~ll~~~--~~lL~~~~~~~~~~~~~~r~ 182 (241)
.+..... .+.+||+|+++.+ |+......+++.+ .++|+ +||.+++......
T Consensus 104 ~~~~~~~~~~~~~fD~i~~~~~-~~~~~~~~~~~~l~~~~~L~--~gG~l~~~~~~~~ 158 (187)
T 2fhp_A 104 NRALEQFYEEKLQFDLVLLDPP-YAKQEIVSQLEKMLERQLLT--NEAVIVCETDKTV 158 (187)
T ss_dssp HHHHHHHHHTTCCEEEEEECCC-GGGCCHHHHHHHHHHTTCEE--EEEEEEEEEETTC
T ss_pred HHHHHHHHhcCCCCCEEEECCC-CCchhHHHHHHHHHHhcccC--CCCEEEEEeCCcc
Confidence 5432111 1458999998777 6667778888888 67787 6777777765543
|
| >2b3t_A Protein methyltransferase HEMK; translation termination, methylation, conformational changes; HET: SAH; 3.10A {Escherichia coli} SCOP: c.66.1.30 PDB: 1t43_A* | Back alignment and structure |
|---|
Probab=99.50 E-value=1.6e-13 Score=117.10 Aligned_cols=140 Identities=14% Similarity=0.188 Sum_probs=103.2
Q ss_pred ccHHHHHHHHHhccCCCCCCeEEEecCCCCHHHHHHHHh--CCEEEEEcCCCcHHHHHHHHHHHHHcCC-ceEEEEeecC
Q 026274 53 PCSVILAEYVWQQRYRFSGANVVELGAGTSLPGLVAAKV--GSNVTLTDDSNRIEVLKNMRRVCEMNKL-NCRVMGLTWG 129 (241)
Q Consensus 53 ~~s~~L~~~l~~~~~~~~~~~VLElGcGtGl~sl~la~~--g~~V~~tD~~~~~~~l~~~~~n~~~n~~-~~~~~~l~w~ 129 (241)
+.+..+.+++..... .++.+|||+|||+|.+++.+++. +.+|+++|+++ ++++.+++|+..++. ++++...|+.
T Consensus 93 ~~te~l~~~~l~~~~-~~~~~vLDlG~GsG~~~~~la~~~~~~~v~~vD~s~--~~l~~a~~n~~~~~~~~v~~~~~d~~ 169 (276)
T 2b3t_A 93 PDTECLVEQALARLP-EQPCRILDLGTGTGAIALALASERPDCEIIAVDRMP--DAVSLAQRNAQHLAIKNIHILQSDWF 169 (276)
T ss_dssp TTHHHHHHHHHHHSC-SSCCEEEEETCTTSHHHHHHHHHCTTSEEEEECSSH--HHHHHHHHHHHHHTCCSEEEECCSTT
T ss_pred chHHHHHHHHHHhcc-cCCCEEEEecCCccHHHHHHHHhCCCCEEEEEECCH--HHHHHHHHHHHHcCCCceEEEEcchh
Confidence 556667777665433 45679999999999999999976 56999999995 799999999998886 4777777776
Q ss_pred CCCcCcCCCCCcEEEEcCCcCCC-------------------------ccHHHHHHHHHHHhhcCCCeEEEEEeeccCch
Q 026274 130 FLDASIFDLNPNIILGADVFYDA-------------------------SAFDDLFATITYLLQSSPGSVFITTYHNRSGH 184 (241)
Q Consensus 130 ~~~~~~~~~~fDlIl~~dvly~~-------------------------~~~~~ll~~~~~lL~~~~~~~~~~~~~~r~~~ 184 (241)
+. ..+.+||+|+++.++... .....+++.+.++|+ +||.+++.......
T Consensus 170 ~~---~~~~~fD~Iv~npPy~~~~~~~l~~~v~~~~p~~al~~~~~g~~~~~~~l~~~~~~Lk--pgG~l~~~~~~~~~- 243 (276)
T 2b3t_A 170 SA---LAGQQFAMIVSNPPYIDEQDPHLQQGDVRFEPLTALVAADSGMADIVHIIEQSRNALV--SGGFLLLEHGWQQG- 243 (276)
T ss_dssp GG---GTTCCEEEEEECCCCBCTTCHHHHSSGGGSSCSTTTBCHHHHTHHHHHHHHHHGGGEE--EEEEEEEECCSSCH-
T ss_pred hh---cccCCccEEEECCCCCCccccccChhhhhcCcHHHHcCCCcHHHHHHHHHHHHHHhcC--CCCEEEEEECchHH-
Confidence 53 224589999998554322 245778888999998 67877776544433
Q ss_pred hHHHHHHHHcCCEEEEE
Q 026274 185 HLIEFLMVKWGLKCVKL 201 (241)
Q Consensus 185 ~~~~~~~~~~g~~~~~i 201 (241)
..+..++++.||....+
T Consensus 244 ~~~~~~l~~~Gf~~v~~ 260 (276)
T 2b3t_A 244 EAVRQAFILAGYHDVET 260 (276)
T ss_dssp HHHHHHHHHTTCTTCCE
T ss_pred HHHHHHHHHCCCcEEEE
Confidence 34556667789875444
|
| >3bkx_A SAM-dependent methyltransferase; YP_807781.1, cyclopropane-fatty-acyl-phospholipid synthase-L protein, methyltransferase domain; 1.85A {Lactobacillus casei} | Back alignment and structure |
|---|
Probab=99.50 E-value=3e-13 Score=114.62 Aligned_cols=109 Identities=17% Similarity=0.030 Sum_probs=83.3
Q ss_pred CCCCCCeEEEecCCCCHHHHHHHHh-C--CEEEEEcCCCc----HHHHHHHHHHHHHcCC--ceEEEEee-cCCCCcCcC
Q 026274 67 YRFSGANVVELGAGTSLPGLVAAKV-G--SNVTLTDDSNR----IEVLKNMRRVCEMNKL--NCRVMGLT-WGFLDASIF 136 (241)
Q Consensus 67 ~~~~~~~VLElGcGtGl~sl~la~~-g--~~V~~tD~~~~----~~~l~~~~~n~~~n~~--~~~~~~l~-w~~~~~~~~ 136 (241)
...++.+|||+|||+|..+..+++. | .+|+++|+++. +++++.+++++..++. ++++...+ +.....+..
T Consensus 40 ~~~~~~~vLDiGcG~G~~~~~l~~~~g~~~~v~gvD~s~~~~~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~ 119 (275)
T 3bkx_A 40 QVKPGEKILEIGCGQGDLSAVLADQVGSSGHVTGIDIASPDYGAPLTLGQAWNHLLAGPLGDRLTVHFNTNLSDDLGPIA 119 (275)
T ss_dssp TCCTTCEEEEESCTTSHHHHHHHHHHCTTCEEEEECSSCTTCCSSSCHHHHHHHHHTSTTGGGEEEECSCCTTTCCGGGT
T ss_pred CCCCCCEEEEeCCCCCHHHHHHHHHhCCCCEEEEEECCccccccHHHHHHHHHHHHhcCCCCceEEEECChhhhccCCCC
Confidence 3457889999999999999999987 4 69999999961 1288999999887775 46666655 322222334
Q ss_pred CCCCcEEEEcCCcCCCccHHHHHHHHHHHhhcCCCeEEEEE
Q 026274 137 DLNPNIILGADVFYDASAFDDLFATITYLLQSSPGSVFITT 177 (241)
Q Consensus 137 ~~~fDlIl~~dvly~~~~~~~ll~~~~~lL~~~~~~~~~~~ 177 (241)
+++||+|++..++++.++...+++.+..+++ +||.+++.
T Consensus 120 ~~~fD~v~~~~~l~~~~~~~~~~~~~~~l~~--~gG~l~~~ 158 (275)
T 3bkx_A 120 DQHFDRVVLAHSLWYFASANALALLFKNMAA--VCDHVDVA 158 (275)
T ss_dssp TCCCSEEEEESCGGGSSCHHHHHHHHHHHTT--TCSEEEEE
T ss_pred CCCEEEEEEccchhhCCCHHHHHHHHHHHhC--CCCEEEEE
Confidence 5689999999999999988888888888876 45555543
|
| >3g07_A 7SK snRNA methylphosphate capping enzyme; structural genomics consortium (SGC), methyltransferase, phosphoprotein, S-adenosyl-L-methionine; HET: SAM; 2.65A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.50 E-value=8.9e-14 Score=119.91 Aligned_cols=106 Identities=16% Similarity=0.179 Sum_probs=82.5
Q ss_pred CCCCCeEEEecCCCCHHHHHHHHh--CCEEEEEcCCCcHHHHHHHHHHHHHcC---------------------------
Q 026274 68 RFSGANVVELGAGTSLPGLVAAKV--GSNVTLTDDSNRIEVLKNMRRVCEMNK--------------------------- 118 (241)
Q Consensus 68 ~~~~~~VLElGcGtGl~sl~la~~--g~~V~~tD~~~~~~~l~~~~~n~~~n~--------------------------- 118 (241)
.+++++|||||||+|..++.+++. +.+|+++|+++ .|++.+++++...+
T Consensus 44 ~~~~~~VLDiGCG~G~~~~~la~~~~~~~v~gvDis~--~~i~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 121 (292)
T 3g07_A 44 WFRGRDVLDLGCNVGHLTLSIACKWGPSRMVGLDIDS--RLIHSARQNIRHYLSEELRLPPQTLEGDPGAEGEEGTTTVR 121 (292)
T ss_dssp GTTTSEEEEESCTTCHHHHHHHHHTCCSEEEEEESCH--HHHHHHHHTC-------------------------------
T ss_pred hcCCCcEEEeCCCCCHHHHHHHHHcCCCEEEEECCCH--HHHHHHHHHHHhhhhhhcccccccccccccccccccccccc
Confidence 357899999999999999999997 56999999995 69999998765433
Q ss_pred --------------------------------CceEEEEeecCCCCc---CcCCCCCcEEEEcCCcCCCc------cHHH
Q 026274 119 --------------------------------LNCRVMGLTWGFLDA---SIFDLNPNIILGADVFYDAS------AFDD 157 (241)
Q Consensus 119 --------------------------------~~~~~~~l~w~~~~~---~~~~~~fDlIl~~dvly~~~------~~~~ 157 (241)
.++++...|+..... +....+||+|++..++.+.. ....
T Consensus 122 ~~~~~p~~~~~~~g~~~~p~~~~~~~~~~~~p~~v~f~~~d~~~~~~~~~~~~~~~fD~I~~~~vl~~ihl~~~~~~~~~ 201 (292)
T 3g07_A 122 KRSCFPASLTASRGPIAAPQVPLDGADTSVFPNNVVFVTGNYVLDRDDLVEAQTPEYDVVLCLSLTKWVHLNWGDEGLKR 201 (292)
T ss_dssp --------------------CCSSTTCCSSTTTTEEEEECCCCCSSHHHHTTCCCCEEEEEEESCHHHHHHHHHHHHHHH
T ss_pred ccccccchhhhccCccccccccccccccccccccceEEecccccCccccccccCCCcCEEEEChHHHHhhhcCCHHHHHH
Confidence 257777777765431 12356899999999985543 7889
Q ss_pred HHHHHHHHhhcCCCeEEEEE
Q 026274 158 LFATITYLLQSSPGSVFITT 177 (241)
Q Consensus 158 ll~~~~~lL~~~~~~~~~~~ 177 (241)
+++.+.++|+ |||.+++.
T Consensus 202 ~l~~~~~~Lk--pGG~lil~ 219 (292)
T 3g07_A 202 MFRRIYRHLR--PGGILVLE 219 (292)
T ss_dssp HHHHHHHHEE--EEEEEEEE
T ss_pred HHHHHHHHhC--CCcEEEEe
Confidence 9999999998 67877775
|
| >3mti_A RRNA methylase; SAM-dependent, PSI, MCSG, structural genomics, midwest cente structural genomics, protein structure initiative; 1.95A {Streptococcus thermophilus} PDB: 3lby_A* | Back alignment and structure |
|---|
Probab=99.50 E-value=7.2e-13 Score=105.92 Aligned_cols=104 Identities=13% Similarity=-0.005 Sum_probs=77.3
Q ss_pred CCCCeEEEecCCCCHHHHHHHHhCCEEEEEcCCCcHHHHHHHHHHHHHcCC-ceEEEEeecCCCCcCcCCCCCcEEEEcC
Q 026274 69 FSGANVVELGAGTSLPGLVAAKVGSNVTLTDDSNRIEVLKNMRRVCEMNKL-NCRVMGLTWGFLDASIFDLNPNIILGAD 147 (241)
Q Consensus 69 ~~~~~VLElGcGtGl~sl~la~~g~~V~~tD~~~~~~~l~~~~~n~~~n~~-~~~~~~l~w~~~~~~~~~~~fDlIl~~d 147 (241)
.++.+|||+|||+|..++.+++.+.+|+++|+++ +|++.+++|+..++. ++++...+..... ...+.+||+|+++-
T Consensus 21 ~~~~~vLDiGcG~G~~~~~la~~~~~v~~vD~s~--~~l~~a~~~~~~~~~~~v~~~~~~~~~l~-~~~~~~fD~v~~~~ 97 (185)
T 3mti_A 21 DDESIVVDATMGNGNDTAFLAGLSKKVYAFDVQE--QALGKTSQRLSDLGIENTELILDGHENLD-HYVREPIRAAIFNL 97 (185)
T ss_dssp CTTCEEEESCCTTSHHHHHHHTTSSEEEEEESCH--HHHHHHHHHHHHHTCCCEEEEESCGGGGG-GTCCSCEEEEEEEE
T ss_pred CCCCEEEEEcCCCCHHHHHHHHhCCEEEEEECCH--HHHHHHHHHHHHcCCCcEEEEeCcHHHHH-hhccCCcCEEEEeC
Confidence 4678999999999999999999988999999995 799999999998875 5666654333321 12356899998763
Q ss_pred CcC---------CCccHHHHHHHHHHHhhcCCCeEEEEE
Q 026274 148 VFY---------DASAFDDLFATITYLLQSSPGSVFITT 177 (241)
Q Consensus 148 vly---------~~~~~~~ll~~~~~lL~~~~~~~~~~~ 177 (241)
... .......+++.+.++|+ |||.+++.
T Consensus 98 ~~~~~~~~~~~~~~~~~~~~l~~~~~~Lk--pgG~l~i~ 134 (185)
T 3mti_A 98 GYLPSADKSVITKPHTTLEAIEKILDRLE--VGGRLAIM 134 (185)
T ss_dssp C-----------CHHHHHHHHHHHHHHEE--EEEEEEEE
T ss_pred CCCCCcchhcccChhhHHHHHHHHHHhcC--CCcEEEEE
Confidence 222 22445677899999998 56655544
|
| >2fpo_A Methylase YHHF; structural genomics, putative methyltransferase, PSI, protei structure initiative; HET: MSE; 2.05A {Escherichia coli} SCOP: c.66.1.46 | Back alignment and structure |
|---|
Probab=99.50 E-value=7.9e-14 Score=113.92 Aligned_cols=106 Identities=15% Similarity=0.101 Sum_probs=83.8
Q ss_pred CCCeEEEecCCCCHHHHHHHHhCC-EEEEEcCCCcHHHHHHHHHHHHHcCC-ceEEEEeecCCCCcCcCCCCCcEEEEcC
Q 026274 70 SGANVVELGAGTSLPGLVAAKVGS-NVTLTDDSNRIEVLKNMRRVCEMNKL-NCRVMGLTWGFLDASIFDLNPNIILGAD 147 (241)
Q Consensus 70 ~~~~VLElGcGtGl~sl~la~~g~-~V~~tD~~~~~~~l~~~~~n~~~n~~-~~~~~~l~w~~~~~~~~~~~fDlIl~~d 147 (241)
++.+|||+|||+|.+++.+++.++ +|+++|+++ ++++.+++|+..++. ++++...|+.+.. +....+||+|++..
T Consensus 54 ~~~~vLDlgcG~G~~~~~l~~~~~~~V~~vD~s~--~~l~~a~~~~~~~~~~~v~~~~~D~~~~~-~~~~~~fD~V~~~~ 130 (202)
T 2fpo_A 54 VDAQCLDCFAGSGALGLEALSRYAAGATLIEMDR--AVSQQLIKNLATLKAGNARVVNSNAMSFL-AQKGTPHNIVFVDP 130 (202)
T ss_dssp TTCEEEETTCTTCHHHHHHHHTTCSEEEEECSCH--HHHHHHHHHHHHTTCCSEEEECSCHHHHH-SSCCCCEEEEEECC
T ss_pred CCCeEEEeCCCcCHHHHHHHhcCCCEEEEEECCH--HHHHHHHHHHHHcCCCcEEEEECCHHHHH-hhcCCCCCEEEECC
Confidence 678999999999999999888876 999999995 799999999999886 6777766654421 12345899999876
Q ss_pred CcCCCccHHHHHHHHHH--HhhcCCCeEEEEEeecc
Q 026274 148 VFYDASAFDDLFATITY--LLQSSPGSVFITTYHNR 181 (241)
Q Consensus 148 vly~~~~~~~ll~~~~~--lL~~~~~~~~~~~~~~r 181 (241)
+ |+......+++.+.+ +|+ |+|++++.....
T Consensus 131 p-~~~~~~~~~l~~l~~~~~L~--pgG~l~i~~~~~ 163 (202)
T 2fpo_A 131 P-FRRGLLEETINLLEDNGWLA--DEALIYVESEVE 163 (202)
T ss_dssp S-SSTTTHHHHHHHHHHTTCEE--EEEEEEEEEEGG
T ss_pred C-CCCCcHHHHHHHHHhcCccC--CCcEEEEEECCC
Confidence 6 667788888888876 377 678777776553
|
| >4gek_A TRNA (CMO5U34)-methyltransferase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc, rossmann fold; HET: GEK; 1.50A {Escherichia coli} PDB: 1im8_A* | Back alignment and structure |
|---|
Probab=99.50 E-value=2.9e-13 Score=115.25 Aligned_cols=104 Identities=16% Similarity=0.160 Sum_probs=82.9
Q ss_pred CCCCeEEEecCCCCHHHHHHHHh----CCEEEEEcCCCcHHHHHHHHHHHHHcCC--ceEEEEeecCCCCcCcCCCCCcE
Q 026274 69 FSGANVVELGAGTSLPGLVAAKV----GSNVTLTDDSNRIEVLKNMRRVCEMNKL--NCRVMGLTWGFLDASIFDLNPNI 142 (241)
Q Consensus 69 ~~~~~VLElGcGtGl~sl~la~~----g~~V~~tD~~~~~~~l~~~~~n~~~n~~--~~~~~~l~w~~~~~~~~~~~fDl 142 (241)
.+|.+|||||||||..++.+++. |++|+++|+|+ +|++.+++++...+. ++++...|..+. ..++||+
T Consensus 69 ~~~~~vLDlGcGtG~~~~~la~~~~~~~~~v~gvD~s~--~ml~~A~~~~~~~~~~~~v~~~~~D~~~~----~~~~~d~ 142 (261)
T 4gek_A 69 QPGTQVYDLGCSLGAATLSVRRNIHHDNCKIIAIDNSP--AMIERCRRHIDAYKAPTPVDVIEGDIRDI----AIENASM 142 (261)
T ss_dssp CTTCEEEEETCTTTHHHHHHHHTCCSSSCEEEEEESCH--HHHHHHHHHHHTSCCSSCEEEEESCTTTC----CCCSEEE
T ss_pred CCCCEEEEEeCCCCHHHHHHHHhcCCCCCEEEEEECCH--HHHHHHHHHHHhhccCceEEEeecccccc----ccccccc
Confidence 46789999999999999999985 56999999995 799999999887664 566776665543 2247999
Q ss_pred EEEcCCcCCCc--cHHHHHHHHHHHhhcCCCeEEEEEeec
Q 026274 143 ILGADVFYDAS--AFDDLFATITYLLQSSPGSVFITTYHN 180 (241)
Q Consensus 143 Il~~dvly~~~--~~~~ll~~~~~lL~~~~~~~~~~~~~~ 180 (241)
|+++.++++.+ ....+++.+.++|+ |||.+++....
T Consensus 143 v~~~~~l~~~~~~~~~~~l~~i~~~Lk--pGG~lii~e~~ 180 (261)
T 4gek_A 143 VVLNFTLQFLEPSERQALLDKIYQGLN--PGGALVLSEKF 180 (261)
T ss_dssp EEEESCGGGSCHHHHHHHHHHHHHHEE--EEEEEEEEEEB
T ss_pred ceeeeeeeecCchhHhHHHHHHHHHcC--CCcEEEEEecc
Confidence 99999998865 34578999999999 67777766443
|
| >3ege_A Putative methyltransferase from antibiotic biosyn pathway; YP_324569.1, putative methyltransferase from antibiotic BIOS pathway; 2.40A {Anabaena variabilis atcc 29413} | Back alignment and structure |
|---|
Probab=99.50 E-value=1.1e-13 Score=117.03 Aligned_cols=134 Identities=14% Similarity=0.111 Sum_probs=99.9
Q ss_pred HHHHHHHHhccCCCCCCeEEEecCCCCHHHHHHHHhCCEEEEEcCCCcHHHHHHHHHHHHHcCCceEEEEeecCCCCcCc
Q 026274 56 VILAEYVWQQRYRFSGANVVELGAGTSLPGLVAAKVGSNVTLTDDSNRIEVLKNMRRVCEMNKLNCRVMGLTWGFLDASI 135 (241)
Q Consensus 56 ~~L~~~l~~~~~~~~~~~VLElGcGtGl~sl~la~~g~~V~~tD~~~~~~~l~~~~~n~~~n~~~~~~~~l~w~~~~~~~ 135 (241)
..+.+++.......++.+|||+|||+|..+..+++.+++|+++|+++ .+++.++++. ++++...++.+. +.
T Consensus 20 ~~~~~~l~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~~~v~gvD~s~--~~~~~a~~~~-----~~~~~~~d~~~~--~~ 90 (261)
T 3ege_A 20 IRIVNAIINLLNLPKGSVIADIGAGTGGYSVALANQGLFVYAVEPSI--VMRQQAVVHP-----QVEWFTGYAENL--AL 90 (261)
T ss_dssp HHHHHHHHHHHCCCTTCEEEEETCTTSHHHHHHHTTTCEEEEECSCH--HHHHSSCCCT-----TEEEECCCTTSC--CS
T ss_pred HHHHHHHHHHhCCCCCCEEEEEcCcccHHHHHHHhCCCEEEEEeCCH--HHHHHHHhcc-----CCEEEECchhhC--CC
Confidence 34556665554456788999999999999999999899999999995 5777665433 677777777553 33
Q ss_pred CCCCCcEEEEcCCcCCCccHHHHHHHHHHHhhcCCCeEEEEEeeccC----------------------chhHHHHHHHH
Q 026274 136 FDLNPNIILGADVFYDASAFDDLFATITYLLQSSPGSVFITTYHNRS----------------------GHHLIEFLMVK 193 (241)
Q Consensus 136 ~~~~fDlIl~~dvly~~~~~~~ll~~~~~lL~~~~~~~~~~~~~~r~----------------------~~~~~~~~~~~ 193 (241)
.+++||+|++..++++.++...+++.+.++|+ +|.+++..+.... ....+. ++++
T Consensus 91 ~~~~fD~v~~~~~l~~~~~~~~~l~~~~~~Lk--gG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~l~~ 167 (261)
T 3ege_A 91 PDKSVDGVISILAIHHFSHLEKSFQEMQRIIR--DGTIVLLTFDIRLAQRIWLYDYFPFLWEDALRFLPLDEQIN-LLQE 167 (261)
T ss_dssp CTTCBSEEEEESCGGGCSSHHHHHHHHHHHBC--SSCEEEEEECGGGCCCCGGGGTCHHHHHHHHTSCCHHHHHH-HHHH
T ss_pred CCCCEeEEEEcchHhhccCHHHHHHHHHHHhC--CcEEEEEEcCCchhHHHHHHHHHHHHhhhhhhhCCCHHHHH-HHHH
Confidence 45689999999999999999999999999997 4545555543211 112234 7788
Q ss_pred cCCEEEEE
Q 026274 194 WGLKCVKL 201 (241)
Q Consensus 194 ~g~~~~~i 201 (241)
.||....+
T Consensus 168 aGF~~v~~ 175 (261)
T 3ege_A 168 NTKRRVEA 175 (261)
T ss_dssp HHCSEEEE
T ss_pred cCCCceeE
Confidence 99976665
|
| >3cc8_A Putative methyltransferase; structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PS transferase; 1.64A {Bacillus cereus} | Back alignment and structure |
|---|
Probab=99.50 E-value=2.3e-13 Score=111.69 Aligned_cols=123 Identities=12% Similarity=0.105 Sum_probs=94.4
Q ss_pred CCCCeEEEecCCCCHHHHHHHHhCCEEEEEcCCCcHHHHHHHHHHHHHcCCceEEEEeecCCCCcCcCCCCCcEEEEcCC
Q 026274 69 FSGANVVELGAGTSLPGLVAAKVGSNVTLTDDSNRIEVLKNMRRVCEMNKLNCRVMGLTWGFLDASIFDLNPNIILGADV 148 (241)
Q Consensus 69 ~~~~~VLElGcGtGl~sl~la~~g~~V~~tD~~~~~~~l~~~~~n~~~n~~~~~~~~l~w~~~~~~~~~~~fDlIl~~dv 148 (241)
.++.+|||+|||+|..+..+++.|.+|+++|+++ ++++.++++.. ++...+..+...+..+.+||+|+++++
T Consensus 31 ~~~~~vLdiG~G~G~~~~~l~~~~~~~~~~D~~~--~~~~~~~~~~~------~~~~~d~~~~~~~~~~~~fD~v~~~~~ 102 (230)
T 3cc8_A 31 KEWKEVLDIGCSSGALGAAIKENGTRVSGIEAFP--EAAEQAKEKLD------HVVLGDIETMDMPYEEEQFDCVIFGDV 102 (230)
T ss_dssp TTCSEEEEETCTTSHHHHHHHTTTCEEEEEESSH--HHHHHHHTTSS------EEEESCTTTCCCCSCTTCEEEEEEESC
T ss_pred cCCCcEEEeCCCCCHHHHHHHhcCCeEEEEeCCH--HHHHHHHHhCC------cEEEcchhhcCCCCCCCccCEEEECCh
Confidence 4678999999999999999999888999999995 68887776432 455666554333444568999999999
Q ss_pred cCCCccHHHHHHHHHHHhhcCCCeEEEEEeecc-----------------------------CchhHHHHHHHHcCCEEE
Q 026274 149 FYDASAFDDLFATITYLLQSSPGSVFITTYHNR-----------------------------SGHHLIEFLMVKWGLKCV 199 (241)
Q Consensus 149 ly~~~~~~~ll~~~~~lL~~~~~~~~~~~~~~r-----------------------------~~~~~~~~~~~~~g~~~~ 199 (241)
+++..+...+++.+.++|+ +||.+++..... .+...+..++++.||+..
T Consensus 103 l~~~~~~~~~l~~~~~~L~--~gG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gf~~~ 180 (230)
T 3cc8_A 103 LEHLFDPWAVIEKVKPYIK--QNGVILASIPNVSHISVLAPLLAGNWTYTEYGLLDKTHIRFFTFNEMLRMFLKAGYSIS 180 (230)
T ss_dssp GGGSSCHHHHHHHTGGGEE--EEEEEEEEEECTTSHHHHHHHHTTCCCCBSSSTTBTTCCCCCCHHHHHHHHHHTTEEEE
T ss_pred hhhcCCHHHHHHHHHHHcC--CCCEEEEEeCCcchHHHHHHHhcCCceeccCCCCCcceEEEecHHHHHHHHHHcCCeEE
Confidence 9999999999999999998 567666653321 123445566788899887
Q ss_pred EE
Q 026274 200 KL 201 (241)
Q Consensus 200 ~i 201 (241)
.+
T Consensus 181 ~~ 182 (230)
T 3cc8_A 181 KV 182 (230)
T ss_dssp EE
T ss_pred EE
Confidence 76
|
| >2p35_A Trans-aconitate 2-methyltransferase; SAM dependent methyltrans agrobacterium tumefaciens, structural genomics, PSI-2; HET: SAH; 1.95A {Agrobacterium tumefaciens str} | Back alignment and structure |
|---|
Probab=99.50 E-value=3.8e-13 Score=112.80 Aligned_cols=101 Identities=13% Similarity=0.081 Sum_probs=83.4
Q ss_pred CCCCCCeEEEecCCCCHHHHHHHHh--CCEEEEEcCCCcHHHHHHHHHHHHHcCCceEEEEeecCCCCcCcCCCCCcEEE
Q 026274 67 YRFSGANVVELGAGTSLPGLVAAKV--GSNVTLTDDSNRIEVLKNMRRVCEMNKLNCRVMGLTWGFLDASIFDLNPNIIL 144 (241)
Q Consensus 67 ~~~~~~~VLElGcGtGl~sl~la~~--g~~V~~tD~~~~~~~l~~~~~n~~~n~~~~~~~~l~w~~~~~~~~~~~fDlIl 144 (241)
...++.+|||+|||+|..+..+++. +.+|+++|+++ ++++.++++ ..++.+...++.+.. .+.+||+|+
T Consensus 30 ~~~~~~~vLdiG~G~G~~~~~l~~~~~~~~v~~~D~s~--~~~~~a~~~----~~~~~~~~~d~~~~~---~~~~fD~v~ 100 (259)
T 2p35_A 30 PLERVLNGYDLGCGPGNSTELLTDRYGVNVITGIDSDD--DMLEKAADR----LPNTNFGKADLATWK---PAQKADLLY 100 (259)
T ss_dssp CCSCCSSEEEETCTTTHHHHHHHHHHCTTSEEEEESCH--HHHHHHHHH----STTSEEEECCTTTCC---CSSCEEEEE
T ss_pred CCCCCCEEEEecCcCCHHHHHHHHhCCCCEEEEEECCH--HHHHHHHHh----CCCcEEEECChhhcC---ccCCcCEEE
Confidence 3456789999999999999999988 78999999995 699888876 335677777776543 356899999
Q ss_pred EcCCcCCCccHHHHHHHHHHHhhcCCCeEEEEEe
Q 026274 145 GADVFYDASAFDDLFATITYLLQSSPGSVFITTY 178 (241)
Q Consensus 145 ~~dvly~~~~~~~ll~~~~~lL~~~~~~~~~~~~ 178 (241)
++.++++.++...+++.+.++|+ |||.+++..
T Consensus 101 ~~~~l~~~~~~~~~l~~~~~~L~--pgG~l~~~~ 132 (259)
T 2p35_A 101 ANAVFQWVPDHLAVLSQLMDQLE--SGGVLAVQM 132 (259)
T ss_dssp EESCGGGSTTHHHHHHHHGGGEE--EEEEEEEEE
T ss_pred EeCchhhCCCHHHHHHHHHHhcC--CCeEEEEEe
Confidence 99999999999999999999998 566666553
|
| >4hg2_A Methyltransferase type 11; structural genomics, PSI-biology, midwest center for structu genomics, MCSG; HET: MES; 1.60A {Anaeromyxobacter dehalogenans} | Back alignment and structure |
|---|
Probab=99.49 E-value=1.3e-13 Score=117.07 Aligned_cols=108 Identities=16% Similarity=0.205 Sum_probs=83.0
Q ss_pred HHHHHHhccCCCCCCeEEEecCCCCHHHHHHHHhCCEEEEEcCCCcHHHHHHHHHHHHHcCCceEEEEeecCCCCcCcCC
Q 026274 58 LAEYVWQQRYRFSGANVVELGAGTSLPGLVAAKVGSNVTLTDDSNRIEVLKNMRRVCEMNKLNCRVMGLTWGFLDASIFD 137 (241)
Q Consensus 58 L~~~l~~~~~~~~~~~VLElGcGtGl~sl~la~~g~~V~~tD~~~~~~~l~~~~~n~~~n~~~~~~~~l~w~~~~~~~~~ 137 (241)
|.++|..... .+.+|||||||+|..+..+++.+.+|+++|+|+ +|++.+++ ..++.+...+..+. +..+
T Consensus 29 l~~~l~~~~~--~~~~vLDvGcGtG~~~~~l~~~~~~v~gvD~s~--~ml~~a~~-----~~~v~~~~~~~e~~--~~~~ 97 (257)
T 4hg2_A 29 LFRWLGEVAP--ARGDALDCGCGSGQASLGLAEFFERVHAVDPGE--AQIRQALR-----HPRVTYAVAPAEDT--GLPP 97 (257)
T ss_dssp HHHHHHHHSS--CSSEEEEESCTTTTTHHHHHTTCSEEEEEESCH--HHHHTCCC-----CTTEEEEECCTTCC--CCCS
T ss_pred HHHHHHHhcC--CCCCEEEEcCCCCHHHHHHHHhCCEEEEEeCcH--Hhhhhhhh-----cCCceeehhhhhhh--cccC
Confidence 5577765432 456899999999999999999999999999995 68876643 34577777766553 4456
Q ss_pred CCCcEEEEcCCcCCCccHHHHHHHHHHHhhcCCCeEE-EEEee
Q 026274 138 LNPNIILGADVFYDASAFDDLFATITYLLQSSPGSVF-ITTYH 179 (241)
Q Consensus 138 ~~fDlIl~~dvly~~~~~~~ll~~~~~lL~~~~~~~~-~~~~~ 179 (241)
++||+|+++.++++. +.+.+++.+.++|+ |||.+ ++.+.
T Consensus 98 ~sfD~v~~~~~~h~~-~~~~~~~e~~rvLk--pgG~l~~~~~~ 137 (257)
T 4hg2_A 98 ASVDVAIAAQAMHWF-DLDRFWAELRRVAR--PGAVFAAVTYG 137 (257)
T ss_dssp SCEEEEEECSCCTTC-CHHHHHHHHHHHEE--EEEEEEEEEEC
T ss_pred CcccEEEEeeehhHh-hHHHHHHHHHHHcC--CCCEEEEEECC
Confidence 799999999999876 57889999999999 55654 44443
|
| >1zx0_A Guanidinoacetate N-methyltransferase; structural genomics, structural genomics consortium; HET: SAH; 1.86A {Homo sapiens} PDB: 3orh_A* 1xcj_A* 1xcl_A* 1p1c_A* 1p1b_A* 1khh_A* | Back alignment and structure |
|---|
Probab=99.49 E-value=3.4e-14 Score=118.39 Aligned_cols=105 Identities=16% Similarity=0.205 Sum_probs=81.8
Q ss_pred CCCCeEEEecCCCCHHHHHHHHhCC-EEEEEcCCCcHHHHHHHHHHHHHcCCceEEEEeecCCCCcCcCCCCCcEEEE-c
Q 026274 69 FSGANVVELGAGTSLPGLVAAKVGS-NVTLTDDSNRIEVLKNMRRVCEMNKLNCRVMGLTWGFLDASIFDLNPNIILG-A 146 (241)
Q Consensus 69 ~~~~~VLElGcGtGl~sl~la~~g~-~V~~tD~~~~~~~l~~~~~n~~~n~~~~~~~~l~w~~~~~~~~~~~fDlIl~-~ 146 (241)
.++.+|||||||+|..+..+++.+. +|+++|+++ +|++.+++++..++.++.+...++.+...+..+++||+|++ .
T Consensus 59 ~~~~~vLDiGcGtG~~~~~l~~~~~~~v~gvD~s~--~~l~~a~~~~~~~~~~v~~~~~d~~~~~~~~~~~~fD~V~~d~ 136 (236)
T 1zx0_A 59 SKGGRVLEVGFGMAIAASKVQEAPIDEHWIIECND--GVFQRLRDWAPRQTHKVIPLKGLWEDVAPTLPDGHFDGILYDT 136 (236)
T ss_dssp TTCEEEEEECCTTSHHHHHHHTSCEEEEEEEECCH--HHHHHHHHHGGGCSSEEEEEESCHHHHGGGSCTTCEEEEEECC
T ss_pred CCCCeEEEEeccCCHHHHHHHhcCCCeEEEEcCCH--HHHHHHHHHHHhcCCCeEEEecCHHHhhcccCCCceEEEEECC
Confidence 3567999999999999999988766 899999995 79999999988878788888887765433444578999998 4
Q ss_pred CCc----CCCccHHHHHHHHHHHhhcCCCeEEEEE
Q 026274 147 DVF----YDASAFDDLFATITYLLQSSPGSVFITT 177 (241)
Q Consensus 147 dvl----y~~~~~~~ll~~~~~lL~~~~~~~~~~~ 177 (241)
-.+ .+....+.+++.+.++|+ |||.+++.
T Consensus 137 ~~~~~~~~~~~~~~~~l~~~~r~Lk--pgG~l~~~ 169 (236)
T 1zx0_A 137 YPLSEETWHTHQFNFIKNHAFRLLK--PGGVLTYC 169 (236)
T ss_dssp CCCBGGGTTTHHHHHHHHTHHHHEE--EEEEEEEC
T ss_pred cccchhhhhhhhHHHHHHHHHHhcC--CCeEEEEE
Confidence 332 123345577999999999 66776654
|
| >1uwv_A 23S rRNA (uracil-5-)-methyltransferase RUMA; RNA modification, iron-sulfur cluster, RNA processing; 1.95A {Escherichia coli} SCOP: b.40.4.12 c.66.1.40 PDB: 2bh2_A* | Back alignment and structure |
|---|
Probab=99.48 E-value=1.2e-12 Score=118.99 Aligned_cols=151 Identities=13% Similarity=0.048 Sum_probs=107.9
Q ss_pred cHHHHHHHHHhccCCCCCCeEEEecCCCCHHHHHHHHhCCEEEEEcCCCcHHHHHHHHHHHHHcCC-ceEEEEeecCCCC
Q 026274 54 CSVILAEYVWQQRYRFSGANVVELGAGTSLPGLVAAKVGSNVTLTDDSNRIEVLKNMRRVCEMNKL-NCRVMGLTWGFLD 132 (241)
Q Consensus 54 ~s~~L~~~l~~~~~~~~~~~VLElGcGtGl~sl~la~~g~~V~~tD~~~~~~~l~~~~~n~~~n~~-~~~~~~l~w~~~~ 132 (241)
.+..+.+++........+.+|||+|||+|.+++.+|+.+.+|+++|+++ ++++.+++|+..|++ ++++...|+.+..
T Consensus 270 ~~e~l~~~~~~~l~~~~~~~VLDlgcG~G~~~~~la~~~~~V~gvD~s~--~al~~A~~n~~~~~~~~v~f~~~d~~~~l 347 (433)
T 1uwv_A 270 VNQKMVARALEWLDVQPEDRVLDLFCGMGNFTLPLATQAASVVGVEGVP--ALVEKGQQNARLNGLQNVTFYHENLEEDV 347 (433)
T ss_dssp HHHHHHHHHHHHHTCCTTCEEEEESCTTTTTHHHHHTTSSEEEEEESCH--HHHHHHHHHHHHTTCCSEEEEECCTTSCC
T ss_pred HHHHHHHHHHHhhcCCCCCEEEECCCCCCHHHHHHHhhCCEEEEEeCCH--HHHHHHHHHHHHcCCCceEEEECCHHHHh
Confidence 3555666665544445678999999999999999999988999999995 799999999999987 5888888887643
Q ss_pred cC--cCCCCCcEEEEcCCcCCCccHHHHHHHHHHHhhcCCCeEEEEEeeccCchhHHHHHHHHcCCEEEEE--ecCCCCC
Q 026274 133 AS--IFDLNPNIILGADVFYDASAFDDLFATITYLLQSSPGSVFITTYHNRSGHHLIEFLMVKWGLKCVKL--VDGFSFL 208 (241)
Q Consensus 133 ~~--~~~~~fDlIl~~dvly~~~~~~~ll~~~~~lL~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~i--~~~~~~~ 208 (241)
.. ..+.+||+|++..+.... ..+++.+.. ..++.++++++........... +.+.||....+ .+.|..+
T Consensus 348 ~~~~~~~~~fD~Vv~dPPr~g~---~~~~~~l~~---~~p~~ivyvsc~p~tlard~~~-l~~~Gy~~~~~~~~d~Fp~t 420 (433)
T 1uwv_A 348 TKQPWAKNGFDKVLLDPARAGA---AGVMQQIIK---LEPIRIVYVSCNPATLARDSEA-LLKAGYTIARLAMLDMFPHT 420 (433)
T ss_dssp SSSGGGTTCCSEEEECCCTTCC---HHHHHHHHH---HCCSEEEEEESCHHHHHHHHHH-HHHTTCEEEEEEEECCSTTS
T ss_pred hhhhhhcCCCCEEEECCCCccH---HHHHHHHHh---cCCCeEEEEECChHHHHhhHHH-HHHCCcEEEEEEEeccCCCC
Confidence 22 234589999975443322 245555554 2478889888765444333333 35679988775 7777776
Q ss_pred Ccccc
Q 026274 209 PHYKA 213 (241)
Q Consensus 209 p~~~~ 213 (241)
+|.+.
T Consensus 421 ~HvE~ 425 (433)
T 1uwv_A 421 GHLES 425 (433)
T ss_dssp SCCEE
T ss_pred CeEEE
Confidence 66543
|
| >3q7e_A Protein arginine N-methyltransferase 1; HET: SAH; 2.20A {Rattus norvegicus} PDB: 1orh_A* 1ori_A* 1or8_A* | Back alignment and structure |
|---|
Probab=99.48 E-value=2.8e-13 Score=119.84 Aligned_cols=109 Identities=18% Similarity=0.267 Sum_probs=88.9
Q ss_pred HHHHhccCCCCCCeEEEecCCCCHHHHHHHHhCC-EEEEEcCCCcHHHHHHHHHHHHHcCCc--eEEEEeecCCCCcCcC
Q 026274 60 EYVWQQRYRFSGANVVELGAGTSLPGLVAAKVGS-NVTLTDDSNRIEVLKNMRRVCEMNKLN--CRVMGLTWGFLDASIF 136 (241)
Q Consensus 60 ~~l~~~~~~~~~~~VLElGcGtGl~sl~la~~g~-~V~~tD~~~~~~~l~~~~~n~~~n~~~--~~~~~l~w~~~~~~~~ 136 (241)
+.+..+....++++|||+|||+|.+++.+++.|+ +|+++|+++ +++.+++++..++.. +++...++.+. +..
T Consensus 56 ~~i~~~~~~~~~~~VLDvGcG~G~~~~~la~~g~~~v~gvD~s~---~l~~a~~~~~~~~~~~~v~~~~~d~~~~--~~~ 130 (349)
T 3q7e_A 56 NSMFHNRHLFKDKVVLDVGSGTGILCMFAAKAGARKVIGIECSS---ISDYAVKIVKANKLDHVVTIIKGKVEEV--ELP 130 (349)
T ss_dssp HHHHTCHHHHTTCEEEEESCTTSHHHHHHHHTTCSEEEEEECST---HHHHHHHHHHHTTCTTTEEEEESCTTTC--CCS
T ss_pred HHHHhccccCCCCEEEEEeccchHHHHHHHHCCCCEEEEECcHH---HHHHHHHHHHHcCCCCcEEEEECcHHHc--cCC
Confidence 3444444556889999999999999999999987 999999994 999999999998875 78888887765 333
Q ss_pred CCCCcEEEEcCCc---CCCccHHHHHHHHHHHhhcCCCeEEE
Q 026274 137 DLNPNIILGADVF---YDASAFDDLFATITYLLQSSPGSVFI 175 (241)
Q Consensus 137 ~~~fDlIl~~dvl---y~~~~~~~ll~~~~~lL~~~~~~~~~ 175 (241)
+++||+|++..+. .+....+.+++.+.++|+ |||.++
T Consensus 131 ~~~fD~Iis~~~~~~l~~~~~~~~~l~~~~r~Lk--pgG~li 170 (349)
T 3q7e_A 131 VEKVDIIISEWMGYCLFYESMLNTVLHARDKWLA--PDGLIF 170 (349)
T ss_dssp SSCEEEEEECCCBBTBTBTCCHHHHHHHHHHHEE--EEEEEE
T ss_pred CCceEEEEEccccccccCchhHHHHHHHHHHhCC--CCCEEc
Confidence 5689999997653 445889999999999998 567665
|
| >1ri5_A MRNA capping enzyme; methyltransferase, M7G, messenger RNA CAP, structural genomics, PSI, protein structure initiative; 2.10A {Encephalitozoon cuniculi} SCOP: c.66.1.34 PDB: 1ri2_A* 1ri3_A* 1ri1_A* 1ri4_A 1z3c_A* 2hv9_A* | Back alignment and structure |
|---|
Probab=99.48 E-value=2.6e-13 Score=116.00 Aligned_cols=105 Identities=19% Similarity=0.127 Sum_probs=83.9
Q ss_pred CCCCeEEEecCCCCHHHHHHHHhCC-EEEEEcCCCcHHHHHHHHHHHHHcCC--ceEEEEeecCCCCcCcCCCCCcEEEE
Q 026274 69 FSGANVVELGAGTSLPGLVAAKVGS-NVTLTDDSNRIEVLKNMRRVCEMNKL--NCRVMGLTWGFLDASIFDLNPNIILG 145 (241)
Q Consensus 69 ~~~~~VLElGcGtGl~sl~la~~g~-~V~~tD~~~~~~~l~~~~~n~~~n~~--~~~~~~l~w~~~~~~~~~~~fDlIl~ 145 (241)
.++.+|||+|||+|..+..+++.+. +|+++|+++ ++++.+++++..++. ++.+...+..+.... .+.+||+|++
T Consensus 63 ~~~~~vLDiGcG~G~~~~~l~~~~~~~v~gvD~s~--~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~-~~~~fD~v~~ 139 (298)
T 1ri5_A 63 KRGDSVLDLGCGKGGDLLKYERAGIGEYYGVDIAE--VSINDARVRARNMKRRFKVFFRAQDSYGRHMD-LGKEFDVISS 139 (298)
T ss_dssp CTTCEEEEETCTTTTTHHHHHHHTCSEEEEEESCH--HHHHHHHHHHHTSCCSSEEEEEESCTTTSCCC-CSSCEEEEEE
T ss_pred CCCCeEEEECCCCCHHHHHHHHCCCCEEEEEECCH--HHHHHHHHHHHhcCCCccEEEEECCccccccC-CCCCcCEEEE
Confidence 4678999999999998888998887 999999995 799999999887765 467777666553211 3568999999
Q ss_pred cCCcCC----CccHHHHHHHHHHHhhcCCCeEEEEEe
Q 026274 146 ADVFYD----ASAFDDLFATITYLLQSSPGSVFITTY 178 (241)
Q Consensus 146 ~dvly~----~~~~~~ll~~~~~lL~~~~~~~~~~~~ 178 (241)
..++++ ..+...+++.+.++|+ |||.+++..
T Consensus 140 ~~~l~~~~~~~~~~~~~l~~~~~~Lk--pgG~l~~~~ 174 (298)
T 1ri5_A 140 QFSFHYAFSTSESLDIAQRNIARHLR--PGGYFIMTV 174 (298)
T ss_dssp ESCGGGGGSSHHHHHHHHHHHHHTEE--EEEEEEEEE
T ss_pred CchhhhhcCCHHHHHHHHHHHHHhcC--CCCEEEEEE
Confidence 999966 5677899999999998 566666553
|
| >2frn_A Hypothetical protein PH0793; structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; 2.10A {Pyrococcus horikoshii OT3} PDB: 3k6r_A 3a25_A* 3a26_A* | Back alignment and structure |
|---|
Probab=99.48 E-value=4e-13 Score=115.18 Aligned_cols=121 Identities=16% Similarity=0.147 Sum_probs=91.4
Q ss_pred CCCeEEEecCCCCHHHHHHHHhCC-EEEEEcCCCcHHHHHHHHHHHHHcCCc--eEEEEeecCCCCcCcCCCCCcEEEEc
Q 026274 70 SGANVVELGAGTSLPGLVAAKVGS-NVTLTDDSNRIEVLKNMRRVCEMNKLN--CRVMGLTWGFLDASIFDLNPNIILGA 146 (241)
Q Consensus 70 ~~~~VLElGcGtGl~sl~la~~g~-~V~~tD~~~~~~~l~~~~~n~~~n~~~--~~~~~l~w~~~~~~~~~~~fDlIl~~ 146 (241)
++.+|||+|||+|.+++.+|+.|+ +|+++|+++ .+++.+++|++.|++. +++...|..+... +.+||+|++.
T Consensus 125 ~~~~VLDlgcG~G~~~~~la~~~~~~V~~vD~s~--~~~~~a~~n~~~n~~~~~v~~~~~D~~~~~~---~~~fD~Vi~~ 199 (278)
T 2frn_A 125 PDELVVDMFAGIGHLSLPIAVYGKAKVIAIEKDP--YTFKFLVENIHLNKVEDRMSAYNMDNRDFPG---ENIADRILMG 199 (278)
T ss_dssp TTCEEEETTCTTTTTHHHHHHHTCCEEEEECCCH--HHHHHHHHHHHHTTCTTTEEEECSCTTTCCC---CSCEEEEEEC
T ss_pred CCCEEEEecccCCHHHHHHHHhCCCEEEEEECCH--HHHHHHHHHHHHcCCCceEEEEECCHHHhcc---cCCccEEEEC
Confidence 478999999999999999999988 599999995 7999999999999875 6677666655432 5689999985
Q ss_pred CCcCCCccHHHHHHHHHHHhhcCCCeEEEEE-eec-----cCchhHHHHHHHHcCCEEEEE
Q 026274 147 DVFYDASAFDDLFATITYLLQSSPGSVFITT-YHN-----RSGHHLIEFLMVKWGLKCVKL 201 (241)
Q Consensus 147 dvly~~~~~~~ll~~~~~lL~~~~~~~~~~~-~~~-----r~~~~~~~~~~~~~g~~~~~i 201 (241)
.+ .....+++.+.++|+ |||.+++. +.. ......+...+++.|+.+..+
T Consensus 200 ~p----~~~~~~l~~~~~~Lk--pgG~l~~~~~~~~~~~~~~~~~~i~~~~~~~G~~~~~~ 254 (278)
T 2frn_A 200 YV----VRTHEFIPKALSIAK--DGAIIHYHNTVPEKLMPREPFETFKRITKEYGYDVEKL 254 (278)
T ss_dssp CC----SSGGGGHHHHHHHEE--EEEEEEEEEEEEGGGTTTTTHHHHHHHHHHTTCEEEEE
T ss_pred Cc----hhHHHHHHHHHHHCC--CCeEEEEEEeeccccccccHHHHHHHHHHHcCCeeEEe
Confidence 44 344678888899998 55655543 322 222334455678899988773
|
| >3ocj_A Putative exported protein; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; HET: PLM; 1.39A {Bordetella parapertussis} | Back alignment and structure |
|---|
Probab=99.48 E-value=2.9e-13 Score=117.09 Aligned_cols=128 Identities=16% Similarity=0.141 Sum_probs=100.0
Q ss_pred CCCCeEEEecCCCCHHHHHHH--Hh-CCEEEEEcCCCcHHHHHHHHHHHHHcCCc--eEEEEeecCCCCcCcCCCCCcEE
Q 026274 69 FSGANVVELGAGTSLPGLVAA--KV-GSNVTLTDDSNRIEVLKNMRRVCEMNKLN--CRVMGLTWGFLDASIFDLNPNII 143 (241)
Q Consensus 69 ~~~~~VLElGcGtGl~sl~la--~~-g~~V~~tD~~~~~~~l~~~~~n~~~n~~~--~~~~~l~w~~~~~~~~~~~fDlI 143 (241)
.++.+|||+|||+|..++.++ .. +.+|+++|+++ .+++.+++++..++.. +++...|+.+.. .+.+||+|
T Consensus 117 ~~~~~vLDiGcG~G~~~~~la~~~~~~~~v~gvD~s~--~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~---~~~~fD~v 191 (305)
T 3ocj_A 117 RPGCVVASVPCGWMSELLALDYSACPGVQLVGIDYDP--EALDGATRLAAGHALAGQITLHRQDAWKLD---TREGYDLL 191 (305)
T ss_dssp CTTCEEEETTCTTCHHHHTSCCTTCTTCEEEEEESCH--HHHHHHHHHHTTSTTGGGEEEEECCGGGCC---CCSCEEEE
T ss_pred CCCCEEEEecCCCCHHHHHHHHhcCCCCeEEEEECCH--HHHHHHHHHHHhcCCCCceEEEECchhcCC---ccCCeEEE
Confidence 467899999999999999985 22 55999999995 7999999999888775 788888776642 22689999
Q ss_pred EEcCCcCCCccHHH---HHHHHHHHhhcCCCeEEEEEeecc--------------------------------------C
Q 026274 144 LGADVFYDASAFDD---LFATITYLLQSSPGSVFITTYHNR--------------------------------------S 182 (241)
Q Consensus 144 l~~dvly~~~~~~~---ll~~~~~lL~~~~~~~~~~~~~~r--------------------------------------~ 182 (241)
+++.++++.++... +++.+.++|+ |||.+++....+ .
T Consensus 192 ~~~~~~~~~~~~~~~~~~l~~~~~~Lk--pgG~l~i~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 269 (305)
T 3ocj_A 192 TSNGLNIYEPDDARVTELYRRFWQALK--PGGALVTSFLTPPPALSPDSPWDMQAIDPHDLQLQQLVFTRLIQPRWNALR 269 (305)
T ss_dssp ECCSSGGGCCCHHHHHHHHHHHHHHEE--EEEEEEEECCCCCTTTCTTCCCCGGGSCHHHHHHHHHHHHHTTCCSCCCCC
T ss_pred EECChhhhcCCHHHHHHHHHHHHHhcC--CCeEEEEEecCCCCcccccccceeeccccchhhhhhhHHHHHHhhhhhccC
Confidence 99999998776665 7999999998 677777664221 1
Q ss_pred chhHHHHHHHHcCCEEEEEec
Q 026274 183 GHHLIEFLMVKWGLKCVKLVD 203 (241)
Q Consensus 183 ~~~~~~~~~~~~g~~~~~i~~ 203 (241)
....+..++++.||+...+..
T Consensus 270 ~~~~~~~~l~~aGF~~v~~~~ 290 (305)
T 3ocj_A 270 THAQTRAQLEEAGFTDLRFED 290 (305)
T ss_dssp CHHHHHHHHHHTTCEEEEEEC
T ss_pred CHHHHHHHHHHCCCEEEEEEc
Confidence 334556678899999988743
|
| >3g5t_A Trans-aconitate 3-methyltransferase; structural genomics, protein structure initiative, PSI, center for eukaryotic structural genomics; HET: MSE SAH T8N; 1.12A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.47 E-value=3.6e-13 Score=116.04 Aligned_cols=113 Identities=12% Similarity=-0.012 Sum_probs=89.1
Q ss_pred HHHHHHhccCCCCCCeEEEecCCCCHHHHHHHH---hCCEEEEEcCCCcHHHHHHHHHHHHHc---CCceEEEEeecCCC
Q 026274 58 LAEYVWQQRYRFSGANVVELGAGTSLPGLVAAK---VGSNVTLTDDSNRIEVLKNMRRVCEMN---KLNCRVMGLTWGFL 131 (241)
Q Consensus 58 L~~~l~~~~~~~~~~~VLElGcGtGl~sl~la~---~g~~V~~tD~~~~~~~l~~~~~n~~~n---~~~~~~~~l~w~~~ 131 (241)
+.+++..... .++.+|||+|||+|..+..+++ .+.+|+++|+++ .+++.+++++..+ ..++++...++.+.
T Consensus 25 ~~~~l~~~~~-~~~~~vLDiGcG~G~~~~~la~~~~~~~~v~gvD~s~--~~~~~a~~~~~~~~~~~~~v~~~~~d~~~~ 101 (299)
T 3g5t_A 25 FYKMIDEYHD-GERKLLVDVGCGPGTATLQMAQELKPFEQIIGSDLSA--TMIKTAEVIKEGSPDTYKNVSFKISSSDDF 101 (299)
T ss_dssp HHHHHHHHCC-SCCSEEEEETCTTTHHHHHHHHHSSCCSEEEEEESCH--HHHHHHHHHHHHCC-CCTTEEEEECCTTCC
T ss_pred HHHHHHHHhc-CCCCEEEEECCCCCHHHHHHHHhCCCCCEEEEEeCCH--HHHHHHHHHHHhccCCCCceEEEEcCHHhC
Confidence 3445544322 3678999999999999999995 456999999995 7999999999887 55788888888764
Q ss_pred CcCc----CCCCCcEEEEcCCcCCCccHHHHHHHHHHHhhcCCCeEEEE
Q 026274 132 DASI----FDLNPNIILGADVFYDASAFDDLFATITYLLQSSPGSVFIT 176 (241)
Q Consensus 132 ~~~~----~~~~fDlIl~~dvly~~~~~~~ll~~~~~lL~~~~~~~~~~ 176 (241)
.... ..++||+|+++.++++. +...+++.+.++|+ |||.+++
T Consensus 102 ~~~~~~~~~~~~fD~V~~~~~l~~~-~~~~~l~~~~~~Lk--pgG~l~i 147 (299)
T 3g5t_A 102 KFLGADSVDKQKIDMITAVECAHWF-DFEKFQRSAYANLR--KDGTIAI 147 (299)
T ss_dssp GGGCTTTTTSSCEEEEEEESCGGGS-CHHHHHHHHHHHEE--EEEEEEE
T ss_pred CccccccccCCCeeEEeHhhHHHHh-CHHHHHHHHHHhcC--CCcEEEE
Confidence 3211 12689999999999999 99999999999998 5565554
|
| >2fyt_A Protein arginine N-methyltransferase 3; structural genomics, structural genomics consortium, SGC; HET: SAH; 2.00A {Homo sapiens} SCOP: c.66.1.6 PDB: 3smq_A* 1f3l_A* | Back alignment and structure |
|---|
Probab=99.47 E-value=5.7e-13 Score=117.48 Aligned_cols=111 Identities=20% Similarity=0.293 Sum_probs=88.5
Q ss_pred HHHHHHhccCCCCCCeEEEecCCCCHHHHHHHHhCC-EEEEEcCCCcHHHHHHHHHHHHHcCC--ceEEEEeecCCCCcC
Q 026274 58 LAEYVWQQRYRFSGANVVELGAGTSLPGLVAAKVGS-NVTLTDDSNRIEVLKNMRRVCEMNKL--NCRVMGLTWGFLDAS 134 (241)
Q Consensus 58 L~~~l~~~~~~~~~~~VLElGcGtGl~sl~la~~g~-~V~~tD~~~~~~~l~~~~~n~~~n~~--~~~~~~l~w~~~~~~ 134 (241)
..+.+.......++++|||||||+|.+++.+++.|+ +|+++|+++ +++.++++++.++. ++++...+..+. +
T Consensus 52 ~~~~i~~~~~~~~~~~VLDiGcGtG~ls~~la~~g~~~v~gvD~s~---~~~~a~~~~~~~~~~~~i~~~~~d~~~~--~ 126 (340)
T 2fyt_A 52 YRDFIYQNPHIFKDKVVLDVGCGTGILSMFAAKAGAKKVLGVDQSE---ILYQAMDIIRLNKLEDTITLIKGKIEEV--H 126 (340)
T ss_dssp HHHHHHHCGGGTTTCEEEEETCTTSHHHHHHHHTTCSEEEEEESST---HHHHHHHHHHHTTCTTTEEEEESCTTTS--C
T ss_pred HHHHHHhhhhhcCCCEEEEeeccCcHHHHHHHHcCCCEEEEEChHH---HHHHHHHHHHHcCCCCcEEEEEeeHHHh--c
Confidence 335555555567889999999999999999999987 899999994 89999999998886 577777766653 2
Q ss_pred cCCCCCcEEEEcCC---cCCCccHHHHHHHHHHHhhcCCCeEEE
Q 026274 135 IFDLNPNIILGADV---FYDASAFDDLFATITYLLQSSPGSVFI 175 (241)
Q Consensus 135 ~~~~~fDlIl~~dv---ly~~~~~~~ll~~~~~lL~~~~~~~~~ 175 (241)
..+++||+|++..+ +.+....+.+++.+.++|+ |||.++
T Consensus 127 ~~~~~~D~Ivs~~~~~~l~~~~~~~~~l~~~~~~Lk--pgG~li 168 (340)
T 2fyt_A 127 LPVEKVDVIISEWMGYFLLFESMLDSVLYAKNKYLA--KGGSVY 168 (340)
T ss_dssp CSCSCEEEEEECCCBTTBTTTCHHHHHHHHHHHHEE--EEEEEE
T ss_pred CCCCcEEEEEEcCchhhccCHHHHHHHHHHHHhhcC--CCcEEE
Confidence 33468999998874 5556778889999999998 566655
|
| >2jjq_A Uncharacterized RNA methyltransferase pyrab10780; metal-binding, tRNA methyltransferase, S-adenosyl-L-methionine, iron, 4Fe-4S, iron-sulfur; HET: SAH; 1.8A {Pyrococcus abyssi} PDB: 2vs1_A* | Back alignment and structure |
|---|
Probab=99.47 E-value=1.1e-12 Score=119.16 Aligned_cols=144 Identities=17% Similarity=0.202 Sum_probs=101.9
Q ss_pred cHHHHHHHHHhccCCCCCCeEEEecCCCCHHHHHHHHhCCEEEEEcCCCcHHHHHHHHHHHHHcCCceEEEEeecCCCCc
Q 026274 54 CSVILAEYVWQQRYRFSGANVVELGAGTSLPGLVAAKVGSNVTLTDDSNRIEVLKNMRRVCEMNKLNCRVMGLTWGFLDA 133 (241)
Q Consensus 54 ~s~~L~~~l~~~~~~~~~~~VLElGcGtGl~sl~la~~g~~V~~tD~~~~~~~l~~~~~n~~~n~~~~~~~~l~w~~~~~ 133 (241)
.+..|.+++.. ..++.+|||+|||+|.+++.+|+.+.+|+++|+++ ++++.+++|+..|++.+++...|+.+...
T Consensus 277 ~~e~l~~~~~~---~~~~~~VLDlgcG~G~~sl~la~~~~~V~gvD~s~--~ai~~A~~n~~~ngl~v~~~~~d~~~~~~ 351 (425)
T 2jjq_A 277 QAVNLVRKVSE---LVEGEKILDMYSGVGTFGIYLAKRGFNVKGFDSNE--FAIEMARRNVEINNVDAEFEVASDREVSV 351 (425)
T ss_dssp HHHHHHHHHHH---HCCSSEEEEETCTTTHHHHHHHHTTCEEEEEESCH--HHHHHHHHHHHHHTCCEEEEECCTTTCCC
T ss_pred HHHHHHHHhhc---cCCCCEEEEeeccchHHHHHHHHcCCEEEEEECCH--HHHHHHHHHHHHcCCcEEEEECChHHcCc
Confidence 44555566554 34678999999999999999999988999999995 79999999999998877777777665422
Q ss_pred CcCCCCCcEEEEcCCcCCCccHHHHHHHHHHHhhcCCCeEEEEEeeccCchhHHHHHHHHcCCEEEEEecCCCCCCcccc
Q 026274 134 SIFDLNPNIILGADVFYDASAFDDLFATITYLLQSSPGSVFITTYHNRSGHHLIEFLMVKWGLKCVKLVDGFSFLPHYKA 213 (241)
Q Consensus 134 ~~~~~~fDlIl~~dvly~~~~~~~ll~~~~~lL~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~i~~~~~~~p~~~~ 213 (241)
.+||+|++..+. ....+.+++.+.. |+ |++++++++.+.........+. |.+.-....|+|+.++|.+.
T Consensus 352 ----~~fD~Vv~dPPr--~g~~~~~~~~l~~-l~--p~givyvsc~p~tlarDl~~l~--y~l~~~~~~DmFP~T~HvE~ 420 (425)
T 2jjq_A 352 ----KGFDTVIVDPPR--AGLHPRLVKRLNR-EK--PGVIVYVSCNPETFARDVKMLD--YRIDEIVALDMFPHTPHVEL 420 (425)
T ss_dssp ----TTCSEEEECCCT--TCSCHHHHHHHHH-HC--CSEEEEEESCHHHHHHHHHHSS--CCEEEEEEECCSTTSSCCEE
T ss_pred ----cCCCEEEEcCCc--cchHHHHHHHHHh-cC--CCcEEEEECChHHHHhHHhhCe--EEEEEEEEECcCCCCceEEE
Confidence 279999986552 2233456777664 54 7888888875543322222222 33333344888888877753
|
| >3r0q_C Probable protein arginine N-methyltransferase 4.2; arginine methyltransferase, methylation; HET: SAH; 2.61A {Arabidopsis thaliana} | Back alignment and structure |
|---|
Probab=99.47 E-value=4.7e-13 Score=119.57 Aligned_cols=113 Identities=19% Similarity=0.332 Sum_probs=91.1
Q ss_pred HHHHHHHHhccCCCCCCeEEEecCCCCHHHHHHHHhCC-EEEEEcCCCcHHHHHHHHHHHHHcCCc--eEEEEeecCCCC
Q 026274 56 VILAEYVWQQRYRFSGANVVELGAGTSLPGLVAAKVGS-NVTLTDDSNRIEVLKNMRRVCEMNKLN--CRVMGLTWGFLD 132 (241)
Q Consensus 56 ~~L~~~l~~~~~~~~~~~VLElGcGtGl~sl~la~~g~-~V~~tD~~~~~~~l~~~~~n~~~n~~~--~~~~~l~w~~~~ 132 (241)
..+.+++.......++++|||||||+|.+++.+++.|+ +|+++|++ . |++.++++++.++.. +++...++.+..
T Consensus 49 ~~~~~~i~~~~~~~~~~~VLDlGcGtG~ls~~la~~g~~~V~gvD~s-~--~~~~a~~~~~~~~~~~~v~~~~~d~~~~~ 125 (376)
T 3r0q_C 49 DAYFNAVFQNKHHFEGKTVLDVGTGSGILAIWSAQAGARKVYAVEAT-K--MADHARALVKANNLDHIVEVIEGSVEDIS 125 (376)
T ss_dssp HHHHHHHHTTTTTTTTCEEEEESCTTTHHHHHHHHTTCSEEEEEESS-T--THHHHHHHHHHTTCTTTEEEEESCGGGCC
T ss_pred HHHHHHHHhccccCCCCEEEEeccCcCHHHHHHHhcCCCEEEEEccH-H--HHHHHHHHHHHcCCCCeEEEEECchhhcC
Confidence 34455666666677899999999999999999999998 99999999 3 999999999999875 788887776543
Q ss_pred cCcCCCCCcEEEEcCCcCCC---ccHHHHHHHHHHHhhcCCCeEEEE
Q 026274 133 ASIFDLNPNIILGADVFYDA---SAFDDLFATITYLLQSSPGSVFIT 176 (241)
Q Consensus 133 ~~~~~~~fDlIl~~dvly~~---~~~~~ll~~~~~lL~~~~~~~~~~ 176 (241)
. +++||+|++.-+.|.. .....+++.+.++|+ |||.+++
T Consensus 126 ~---~~~~D~Iv~~~~~~~l~~e~~~~~~l~~~~~~Lk--pgG~li~ 167 (376)
T 3r0q_C 126 L---PEKVDVIISEWMGYFLLRESMFDSVISARDRWLK--PTGVMYP 167 (376)
T ss_dssp C---SSCEEEEEECCCBTTBTTTCTHHHHHHHHHHHEE--EEEEEES
T ss_pred c---CCcceEEEEcChhhcccchHHHHHHHHHHHhhCC--CCeEEEE
Confidence 2 2689999996555543 678889999999998 6676653
|
| >2igt_A SAM dependent methyltransferase; alpha-beta sandwich, beta-barrel, structural genomics, PSI-2 structure initiative; HET: MSE SAM GOL; 1.89A {Agrobacterium tumefaciens str} SCOP: c.66.1.51 | Back alignment and structure |
|---|
Probab=99.47 E-value=7.8e-13 Score=116.36 Aligned_cols=126 Identities=17% Similarity=0.071 Sum_probs=89.9
Q ss_pred CCCeEEEecCCCCHHHHHHHHhCCEEEEEcCCCcHHHHHHHHHHHHHcCCc---eEEEEeecCCCCcCc--CCCCCcEEE
Q 026274 70 SGANVVELGAGTSLPGLVAAKVGSNVTLTDDSNRIEVLKNMRRVCEMNKLN---CRVMGLTWGFLDASI--FDLNPNIIL 144 (241)
Q Consensus 70 ~~~~VLElGcGtGl~sl~la~~g~~V~~tD~~~~~~~l~~~~~n~~~n~~~---~~~~~l~w~~~~~~~--~~~~fDlIl 144 (241)
++.+|||+|||+|.+++.+++.|++|+++|+++ .+++.+++|+..|++. +++...|+.+..... ...+||+|+
T Consensus 153 ~~~~VLDlgcGtG~~sl~la~~ga~V~~VD~s~--~al~~a~~n~~~~gl~~~~v~~i~~D~~~~l~~~~~~~~~fD~Ii 230 (332)
T 2igt_A 153 RPLKVLNLFGYTGVASLVAAAAGAEVTHVDASK--KAIGWAKENQVLAGLEQAPIRWICEDAMKFIQREERRGSTYDIIL 230 (332)
T ss_dssp SCCEEEEETCTTCHHHHHHHHTTCEEEEECSCH--HHHHHHHHHHHHHTCTTSCEEEECSCHHHHHHHHHHHTCCBSEEE
T ss_pred CCCcEEEcccccCHHHHHHHHcCCEEEEEECCH--HHHHHHHHHHHHcCCCccceEEEECcHHHHHHHHHhcCCCceEEE
Confidence 567999999999999999999999999999995 7999999999999874 667666654432111 135899999
Q ss_pred EcCCcCCC----------ccHHHHHHHHHHHhhcCCCeEEEEEeeccC--chhHHHHHH----HHcCCEEE
Q 026274 145 GADVFYDA----------SAFDDLFATITYLLQSSPGSVFITTYHNRS--GHHLIEFLM----VKWGLKCV 199 (241)
Q Consensus 145 ~~dvly~~----------~~~~~ll~~~~~lL~~~~~~~~~~~~~~r~--~~~~~~~~~----~~~g~~~~ 199 (241)
+..+.|.. .....+++.+.++|+ ++|.+++...... ....+..+. .+.|+++.
T Consensus 231 ~dPP~~~~~~~~~~~~~~~~~~~ll~~~~~~Lk--pgG~lli~~~~~~~~~~~~~~~~l~~a~~~~g~~v~ 299 (332)
T 2igt_A 231 TDPPKFGRGTHGEVWQLFDHLPLMLDICREILS--PKALGLVLTAYSIRASFYSMHELMRETMRGAGGVVA 299 (332)
T ss_dssp ECCCSEEECTTCCEEEHHHHHHHHHHHHHHTBC--TTCCEEEEEECCTTSCHHHHHHHHHHHTTTSCSEEE
T ss_pred ECCccccCCchHHHHHHHHHHHHHHHHHHHhcC--cCcEEEEEECCCCCCCHHHHHHHHHHHHHHcCCeEE
Confidence 87765442 246788899999998 5555444433322 233333332 46788776
|
| >1wzn_A SAM-dependent methyltransferase; structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: SAH; 1.90A {Pyrococcus horikoshii} SCOP: c.66.1.43 | Back alignment and structure |
|---|
Probab=99.46 E-value=4.5e-13 Score=112.13 Aligned_cols=104 Identities=25% Similarity=0.316 Sum_probs=84.0
Q ss_pred CCCCeEEEecCCCCHHHHHHHHhCCEEEEEcCCCcHHHHHHHHHHHHHcCCceEEEEeecCCCCcCcCCCCCcEEEEcC-
Q 026274 69 FSGANVVELGAGTSLPGLVAAKVGSNVTLTDDSNRIEVLKNMRRVCEMNKLNCRVMGLTWGFLDASIFDLNPNIILGAD- 147 (241)
Q Consensus 69 ~~~~~VLElGcGtGl~sl~la~~g~~V~~tD~~~~~~~l~~~~~n~~~n~~~~~~~~l~w~~~~~~~~~~~fDlIl~~d- 147 (241)
.++.+|||+|||+|..+..+++.|++|+++|+++ ++++.+++++..++.++.+...++.+.. .+.+||+|++..
T Consensus 40 ~~~~~vLDlGcG~G~~~~~l~~~~~~v~gvD~s~--~~l~~a~~~~~~~~~~v~~~~~d~~~~~---~~~~fD~v~~~~~ 114 (252)
T 1wzn_A 40 REVRRVLDLACGTGIPTLELAERGYEVVGLDLHE--EMLRVARRKAKERNLKIEFLQGDVLEIA---FKNEFDAVTMFFS 114 (252)
T ss_dssp SCCCEEEEETCTTCHHHHHHHHTTCEEEEEESCH--HHHHHHHHHHHHTTCCCEEEESCGGGCC---CCSCEEEEEECSS
T ss_pred cCCCEEEEeCCCCCHHHHHHHHCCCeEEEEECCH--HHHHHHHHHHHhcCCceEEEECChhhcc---cCCCccEEEEcCC
Confidence 4567999999999999999999999999999995 7999999999888888888887776542 235899999753
Q ss_pred CcC--CCccHHHHHHHHHHHhhcCCCeEEEEEee
Q 026274 148 VFY--DASAFDDLFATITYLLQSSPGSVFITTYH 179 (241)
Q Consensus 148 vly--~~~~~~~ll~~~~~lL~~~~~~~~~~~~~ 179 (241)
.+. ..+....+++.+.++|+ |||.+++...
T Consensus 115 ~~~~~~~~~~~~~l~~~~~~L~--pgG~li~~~~ 146 (252)
T 1wzn_A 115 TIMYFDEEDLRKLFSKVAEALK--PGGVFITDFP 146 (252)
T ss_dssp GGGGSCHHHHHHHHHHHHHHEE--EEEEEEEEEE
T ss_pred chhcCCHHHHHHHHHHHHHHcC--CCeEEEEecc
Confidence 232 23567889999999998 6777776543
|
| >2esr_A Methyltransferase; structural genomics, hypothetical protein, streptococcus PYO PSI, protein structure initiative; HET: GLC; 1.80A {Streptococcus pyogenes} SCOP: c.66.1.46 | Back alignment and structure |
|---|
Probab=99.46 E-value=7.8e-14 Score=110.83 Aligned_cols=125 Identities=13% Similarity=0.122 Sum_probs=87.8
Q ss_pred ccHHHHHHHHHhccC-CCCCCeEEEecCCCCHHHHHHHHhCC-EEEEEcCCCcHHHHHHHHHHHHHcCCc--eEEEEeec
Q 026274 53 PCSVILAEYVWQQRY-RFSGANVVELGAGTSLPGLVAAKVGS-NVTLTDDSNRIEVLKNMRRVCEMNKLN--CRVMGLTW 128 (241)
Q Consensus 53 ~~s~~L~~~l~~~~~-~~~~~~VLElGcGtGl~sl~la~~g~-~V~~tD~~~~~~~l~~~~~n~~~n~~~--~~~~~l~w 128 (241)
+....+.+.+..... ..++.+|||+|||+|..++.+++.+. +|+++|+++ ++++.+++|+..++.. +.+...|+
T Consensus 13 p~~~~~~~~~~~~l~~~~~~~~vLDlGcG~G~~~~~l~~~~~~~v~~vD~~~--~~~~~a~~~~~~~~~~~~~~~~~~d~ 90 (177)
T 2esr_A 13 PTSDKVRGAIFNMIGPYFNGGRVLDLFAGSGGLAIEAVSRGMSAAVLVEKNR--KAQAIIQDNIIMTKAENRFTLLKMEA 90 (177)
T ss_dssp -----CHHHHHHHHCSCCCSCEEEEETCTTCHHHHHHHHTTCCEEEEECCCH--HHHHHHHHHHHTTTCGGGEEEECSCH
T ss_pred cCHHHHHHHHHHHHHhhcCCCeEEEeCCCCCHHHHHHHHcCCCEEEEEECCH--HHHHHHHHHHHHcCCCCceEEEECcH
Confidence 444444455443322 45678999999999999999999875 999999995 7999999999988864 67776666
Q ss_pred CCCCcCcCCCCCcEEEEcCCcCCCccHHHHHHHHH--HHhhcCCCeEEEEEeeccCc
Q 026274 129 GFLDASIFDLNPNIILGADVFYDASAFDDLFATIT--YLLQSSPGSVFITTYHNRSG 183 (241)
Q Consensus 129 ~~~~~~~~~~~fDlIl~~dvly~~~~~~~ll~~~~--~lL~~~~~~~~~~~~~~r~~ 183 (241)
.+.. +..+.+||+|+++.+ |+....+.+++.+. ++|+ +||.+++....+..
T Consensus 91 ~~~~-~~~~~~fD~i~~~~~-~~~~~~~~~~~~l~~~~~L~--~gG~l~~~~~~~~~ 143 (177)
T 2esr_A 91 ERAI-DCLTGRFDLVFLDPP-YAKETIVATIEALAAKNLLS--EQVMVVCETDKTVL 143 (177)
T ss_dssp HHHH-HHBCSCEEEEEECCS-SHHHHHHHHHHHHHHTTCEE--EEEEEEEEEETTCC
T ss_pred HHhH-HhhcCCCCEEEECCC-CCcchHHHHHHHHHhCCCcC--CCcEEEEEECCccc
Confidence 5421 122357999998765 44456677777776 7777 67877777655443
|
| >3m33_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, MCSG, midwest center for structural genomics; 2.19A {Deinococcus radiodurans} | Back alignment and structure |
|---|
Probab=99.46 E-value=6.9e-13 Score=109.80 Aligned_cols=117 Identities=15% Similarity=0.039 Sum_probs=90.2
Q ss_pred CCCCeEEEecCCCCHHHHHHHHhCCEEEEEcCCCcHHHHHHHHHHHHHcCCceEEEEeecCCCCcCcC-CCCCcEEEEcC
Q 026274 69 FSGANVVELGAGTSLPGLVAAKVGSNVTLTDDSNRIEVLKNMRRVCEMNKLNCRVMGLTWGFLDASIF-DLNPNIILGAD 147 (241)
Q Consensus 69 ~~~~~VLElGcGtGl~sl~la~~g~~V~~tD~~~~~~~l~~~~~n~~~n~~~~~~~~l~w~~~~~~~~-~~~fDlIl~~d 147 (241)
.++.+|||+|||+|..+..+++.+++|+++|+++ .+++.++++ ..++++...++.+.. +.. +.+||+|+++
T Consensus 47 ~~~~~vLDiGcG~G~~~~~l~~~~~~v~~vD~s~--~~~~~a~~~----~~~~~~~~~d~~~~~-~~~~~~~fD~v~~~- 118 (226)
T 3m33_A 47 TPQTRVLEAGCGHGPDAARFGPQAARWAAYDFSP--ELLKLARAN----APHADVYEWNGKGEL-PAGLGAPFGLIVSR- 118 (226)
T ss_dssp CTTCEEEEESCTTSHHHHHHGGGSSEEEEEESCH--HHHHHHHHH----CTTSEEEECCSCSSC-CTTCCCCEEEEEEE-
T ss_pred CCCCeEEEeCCCCCHHHHHHHHcCCEEEEEECCH--HHHHHHHHh----CCCceEEEcchhhcc-CCcCCCCEEEEEeC-
Confidence 3678999999999999999999999999999995 699988887 345778888875432 233 5689999987
Q ss_pred CcCCCccHHHHHHHHHHHhhcCCCeEEEEEeeccCchhHHHHHHHHcCCEEEEE
Q 026274 148 VFYDASAFDDLFATITYLLQSSPGSVFITTYHNRSGHHLIEFLMVKWGLKCVKL 201 (241)
Q Consensus 148 vly~~~~~~~ll~~~~~lL~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~i 201 (241)
.+...+++.+.++|+ |||.++.. ........+...+.+.||....+
T Consensus 119 -----~~~~~~l~~~~~~Lk--pgG~l~~~-~~~~~~~~~~~~l~~~Gf~~~~~ 164 (226)
T 3m33_A 119 -----RGPTSVILRLPELAA--PDAHFLYV-GPRLNVPEVPERLAAVGWDIVAE 164 (226)
T ss_dssp -----SCCSGGGGGHHHHEE--EEEEEEEE-ESSSCCTHHHHHHHHTTCEEEEE
T ss_pred -----CCHHHHHHHHHHHcC--CCcEEEEe-CCcCCHHHHHHHHHHCCCeEEEE
Confidence 466788889999998 66777632 33334445666778899988765
|
| >3ggd_A SAM-dependent methyltransferase; YP_325210.1, structural GEN joint center for structural genomics, JCSG; HET: SAH; 2.11A {Anabaena variabilis atcc 29413} | Back alignment and structure |
|---|
Probab=99.46 E-value=7e-13 Score=110.64 Aligned_cols=120 Identities=12% Similarity=-0.004 Sum_probs=87.9
Q ss_pred EeccHHHHHHHHHhccCCCCCCeEEEecCCCCHHHHHHHHhCCEEEEEcCCCcHHHHHHHHHHHHHcCCceEEEEeecCC
Q 026274 51 VWPCSVILAEYVWQQRYRFSGANVVELGAGTSLPGLVAAKVGSNVTLTDDSNRIEVLKNMRRVCEMNKLNCRVMGLTWGF 130 (241)
Q Consensus 51 ~W~~s~~L~~~l~~~~~~~~~~~VLElGcGtGl~sl~la~~g~~V~~tD~~~~~~~l~~~~~n~~~n~~~~~~~~l~w~~ 130 (241)
.|..+......+... ..++.+|||+|||+|..+..+++.+.+|+++|+++ .+++.++++.. ..++++...|..+
T Consensus 39 ~~~~~~~~~~~~~~~--~~~~~~vLD~GcG~G~~~~~la~~~~~v~gvD~s~--~~~~~a~~~~~--~~~~~~~~~d~~~ 112 (245)
T 3ggd_A 39 VERAVVVDLPRFELL--FNPELPLIDFACGNGTQTKFLSQFFPRVIGLDVSK--SALEIAAKENT--AANISYRLLDGLV 112 (245)
T ss_dssp GGGTHHHHHHHHTTT--SCTTSCEEEETCTTSHHHHHHHHHSSCEEEEESCH--HHHHHHHHHSC--CTTEEEEECCTTC
T ss_pred hHHHHHHHHHHHhhc--cCCCCeEEEEcCCCCHHHHHHHHhCCCEEEEECCH--HHHHHHHHhCc--ccCceEEECcccc
Confidence 344444444444332 44678999999999999999999999999999995 69999988773 3367777776654
Q ss_pred CCcCc-C--CCCCcEEEEcCCcCCCc--cHHHHHHHHHHHhhcCCCeE-EEEEe
Q 026274 131 LDASI-F--DLNPNIILGADVFYDAS--AFDDLFATITYLLQSSPGSV-FITTY 178 (241)
Q Consensus 131 ~~~~~-~--~~~fDlIl~~dvly~~~--~~~~ll~~~~~lL~~~~~~~-~~~~~ 178 (241)
..... . ...||+|+++.++++.+ +...+++.+.++|+ |||. +++.+
T Consensus 113 ~~~~~~~~~~~~~d~v~~~~~~~~~~~~~~~~~l~~~~~~Lk--pgG~l~i~~~ 164 (245)
T 3ggd_A 113 PEQAAQIHSEIGDANIYMRTGFHHIPVEKRELLGQSLRILLG--KQGAMYLIEL 164 (245)
T ss_dssp HHHHHHHHHHHCSCEEEEESSSTTSCGGGHHHHHHHHHHHHT--TTCEEEEEEE
T ss_pred cccccccccccCccEEEEcchhhcCCHHHHHHHHHHHHHHcC--CCCEEEEEeC
Confidence 32110 1 12599999999999987 88999999999998 5565 44443
|
| >1jsx_A Glucose-inhibited division protein B; methyltransferase fold, structural genomics, PSI, protein structure initiative; 2.40A {Escherichia coli} SCOP: c.66.1.20 | Back alignment and structure |
|---|
Probab=99.45 E-value=4.9e-13 Score=108.66 Aligned_cols=118 Identities=16% Similarity=0.193 Sum_probs=90.1
Q ss_pred CCCeEEEecCCCCHHHHHHHHh--CCEEEEEcCCCcHHHHHHHHHHHHHcCCc-eEEEEeecCCCCcCcCCCCCcEEEEc
Q 026274 70 SGANVVELGAGTSLPGLVAAKV--GSNVTLTDDSNRIEVLKNMRRVCEMNKLN-CRVMGLTWGFLDASIFDLNPNIILGA 146 (241)
Q Consensus 70 ~~~~VLElGcGtGl~sl~la~~--g~~V~~tD~~~~~~~l~~~~~n~~~n~~~-~~~~~l~w~~~~~~~~~~~fDlIl~~ 146 (241)
++.+|||+|||+|..++.+++. +.+|+++|+++ ++++.+++|+..++.. +.+...++.+.. ...+||+|++.
T Consensus 65 ~~~~vLDiG~G~G~~~~~l~~~~~~~~v~~vD~s~--~~~~~a~~~~~~~~~~~v~~~~~d~~~~~---~~~~~D~i~~~ 139 (207)
T 1jsx_A 65 QGERFIDVGTGPGLPGIPLSIVRPEAHFTLLDSLG--KRVRFLRQVQHELKLENIEPVQSRVEEFP---SEPPFDGVISR 139 (207)
T ss_dssp CSSEEEEETCTTTTTHHHHHHHCTTSEEEEEESCH--HHHHHHHHHHHHTTCSSEEEEECCTTTSC---CCSCEEEEECS
T ss_pred CCCeEEEECCCCCHHHHHHHHHCCCCEEEEEeCCH--HHHHHHHHHHHHcCCCCeEEEecchhhCC---ccCCcCEEEEe
Confidence 5789999999999999999987 56999999995 7999999999988764 778877776543 23589999975
Q ss_pred CCcCCCccHHHHHHHHHHHhhcCCCeEEEEEeeccCchhHHHHHHHHcCCEEEEE
Q 026274 147 DVFYDASAFDDLFATITYLLQSSPGSVFITTYHNRSGHHLIEFLMVKWGLKCVKL 201 (241)
Q Consensus 147 dvly~~~~~~~ll~~~~~lL~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~i 201 (241)
. ......+++.+.++|+ |||.+++....... .....+.+ ||+...+
T Consensus 140 ~----~~~~~~~l~~~~~~L~--~gG~l~~~~~~~~~-~~~~~~~~--g~~~~~~ 185 (207)
T 1jsx_A 140 A----FASLNDMVSWCHHLPG--EQGRFYALKGQMPE-DEIALLPE--EYQVESV 185 (207)
T ss_dssp C----SSSHHHHHHHHTTSEE--EEEEEEEEESSCCH-HHHHTSCT--TEEEEEE
T ss_pred c----cCCHHHHHHHHHHhcC--CCcEEEEEeCCCch-HHHHHHhc--CCceeee
Confidence 4 3567899999999998 67777776544332 23333333 8887664
|
| >2g72_A Phenylethanolamine N-methyltransferase; HET: SAM F21; 2.00A {Homo sapiens} SCOP: c.66.1.15 PDB: 1yz3_A* 2an4_A* 2an5_A* 2g70_A* 2g71_A* 2an3_A* 2g8n_A* 2ony_A* 3hcb_A* 3hcc_A* 3hcd_A* 3hcf_A* 3kpj_A* 3kpu_A* 3kpv_A* 3kpw_A* 3kpy_A* 3kqm_A* 3kqo_A* 3kqp_A* ... | Back alignment and structure |
|---|
Probab=99.45 E-value=4.1e-13 Score=115.10 Aligned_cols=130 Identities=20% Similarity=0.223 Sum_probs=90.1
Q ss_pred CCCCeEEEecCCCCHHHHHHHHh-CCEEEEEcCCCcHHHHHHHHHHHHHc-----------------CC-----------
Q 026274 69 FSGANVVELGAGTSLPGLVAAKV-GSNVTLTDDSNRIEVLKNMRRVCEMN-----------------KL----------- 119 (241)
Q Consensus 69 ~~~~~VLElGcGtGl~sl~la~~-g~~V~~tD~~~~~~~l~~~~~n~~~n-----------------~~----------- 119 (241)
.++.+|||||||+|..++.+++. +.+|+++|+++ +|++.+++++... +.
T Consensus 70 ~~~~~vLDiGcG~G~~~~l~~~~~~~~v~gvD~s~--~~l~~a~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~ 147 (289)
T 2g72_A 70 VSGRTLIDIGSGPTVYQLLSACSHFEDITMTDFLE--VNRQELGRWLQEEPGAFNWSMYSQHACLIEGKGECWQDKERQL 147 (289)
T ss_dssp SCCSEEEEETCTTCCGGGTTGGGGCSEEEEECSCH--HHHHHHHHHHTTCTTCCCCHHHHHHHHHHHCSCCCHHHHHHHH
T ss_pred CCCCeEEEECCCcChHHHHhhccCCCeEEEeCCCH--HHHHHHHHHHhhCcccccchhhhhHHHHhcCcccchhhhHHHH
Confidence 46789999999999966656553 66999999995 6999888765421 10
Q ss_pred ---ceEEEEeecCCCCc----CcCCCCCcEEEEcCCcCC----CccHHHHHHHHHHHhhcCCCeEEEEEee---------
Q 026274 120 ---NCRVMGLTWGFLDA----SIFDLNPNIILGADVFYD----ASAFDDLFATITYLLQSSPGSVFITTYH--------- 179 (241)
Q Consensus 120 ---~~~~~~l~w~~~~~----~~~~~~fDlIl~~dvly~----~~~~~~ll~~~~~lL~~~~~~~~~~~~~--------- 179 (241)
...+...|..+... ...+++||+|+++.++++ .++...+++.+.++|+ |||.+++...
T Consensus 148 ~~~~~~~~~~D~~~~~~~~~~~~~~~~fD~V~~~~~l~~~~~~~~~~~~~l~~~~r~Lk--pGG~l~~~~~~~~~~~~~~ 225 (289)
T 2g72_A 148 RARVKRVLPIDVHQPQPLGAGSPAPLPADALVSAFCLEAVSPDLASFQRALDHITTLLR--PGGHLLLIGALEESWYLAG 225 (289)
T ss_dssp HHHEEEEECCCTTSSSTTCSSCSSCSSEEEEEEESCHHHHCSSHHHHHHHHHHHHTTEE--EEEEEEEEEEESCCEEEET
T ss_pred HhhhceEEecccCCCCCccccccCCCCCCEEEehhhhhhhcCCHHHHHHHHHHHHHhcC--CCCEEEEEEecCcceEEcC
Confidence 12344445544111 122356999999999988 5678999999999999 5666555411
Q ss_pred ------ccCchhHHHHHHHHcCCEEEEEe
Q 026274 180 ------NRSGHHLIEFLMVKWGLKCVKLV 202 (241)
Q Consensus 180 ------~r~~~~~~~~~~~~~g~~~~~i~ 202 (241)
...+...+..++++.||+...+.
T Consensus 226 ~~~~~~~~~~~~~l~~~l~~aGf~~~~~~ 254 (289)
T 2g72_A 226 EARLTVVPVSEEEVREALVRSGYKVRDLR 254 (289)
T ss_dssp TEEEECCCCCHHHHHHHHHHTTEEEEEEE
T ss_pred CeeeeeccCCHHHHHHHHHHcCCeEEEee
Confidence 11234455667789999988873
|
| >1yb2_A Hypothetical protein TA0852; structural genomics, methyltransferase, thermoplasma acidoph midwest center for structural genomics, MCSG; 2.01A {Thermoplasma acidophilum} SCOP: c.66.1.13 | Back alignment and structure |
|---|
Probab=99.45 E-value=1.7e-12 Score=110.78 Aligned_cols=125 Identities=16% Similarity=0.140 Sum_probs=94.1
Q ss_pred CCCCCCeEEEecCCCCHHHHHHHHh---CCEEEEEcCCCcHHHHHHHHHHHHHc-CC-ceEEEEeecCCCCcCcCCCCCc
Q 026274 67 YRFSGANVVELGAGTSLPGLVAAKV---GSNVTLTDDSNRIEVLKNMRRVCEMN-KL-NCRVMGLTWGFLDASIFDLNPN 141 (241)
Q Consensus 67 ~~~~~~~VLElGcGtGl~sl~la~~---g~~V~~tD~~~~~~~l~~~~~n~~~n-~~-~~~~~~l~w~~~~~~~~~~~fD 141 (241)
...++.+|||+|||+|..++.+++. +.+|+++|+++ ++++.+++|+..+ +. ++++...|+.+ ...+.+||
T Consensus 107 ~~~~~~~VLD~G~G~G~~~~~la~~~~~~~~v~~vD~s~--~~~~~a~~~~~~~~g~~~v~~~~~d~~~---~~~~~~fD 181 (275)
T 1yb2_A 107 GLRPGMDILEVGVGSGNMSSYILYALNGKGTLTVVERDE--DNLKKAMDNLSEFYDIGNVRTSRSDIAD---FISDQMYD 181 (275)
T ss_dssp CCCTTCEEEEECCTTSHHHHHHHHHHTTSSEEEEECSCH--HHHHHHHHHHHTTSCCTTEEEECSCTTT---CCCSCCEE
T ss_pred CCCCcCEEEEecCCCCHHHHHHHHHcCCCCEEEEEECCH--HHHHHHHHHHHhcCCCCcEEEEECchhc---cCcCCCcc
Confidence 4456789999999999999999987 67999999995 7999999999887 64 57777666654 22345899
Q ss_pred EEEEcCCcCCCccHHHHHHHHHHHhhcCCCeEEEEEeeccCchhHHHHHHHHcCCEEEEEec
Q 026274 142 IILGADVFYDASAFDDLFATITYLLQSSPGSVFITTYHNRSGHHLIEFLMVKWGLKCVKLVD 203 (241)
Q Consensus 142 lIl~~dvly~~~~~~~ll~~~~~lL~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~i~~ 203 (241)
+|++ +.++...+++.+.++|+ +||.+++..............+++.||......+
T Consensus 182 ~Vi~-----~~~~~~~~l~~~~~~Lk--pgG~l~i~~~~~~~~~~~~~~l~~~Gf~~~~~~~ 236 (275)
T 1yb2_A 182 AVIA-----DIPDPWNHVQKIASMMK--PGSVATFYLPNFDQSEKTVLSLSASGMHHLETVE 236 (275)
T ss_dssp EEEE-----CCSCGGGSHHHHHHTEE--EEEEEEEEESSHHHHHHHHHHSGGGTEEEEEEEE
T ss_pred EEEE-----cCcCHHHHHHHHHHHcC--CCCEEEEEeCCHHHHHHHHHHHHHCCCeEEEEEE
Confidence 9998 45567789999999998 6677666654432223333445678998877643
|
| >4dcm_A Ribosomal RNA large subunit methyltransferase G; 23S rRNA (guanine1835-N2)-methyltransferase; HET: SAM; 2.30A {Escherichia coli} | Back alignment and structure |
|---|
Probab=99.45 E-value=1.7e-12 Score=116.03 Aligned_cols=107 Identities=18% Similarity=0.170 Sum_probs=81.0
Q ss_pred CCCCCCeEEEecCCCCHHHHHHHHh--CCEEEEEcCCCcHHHHHHHHHHHHHcCCc----eEEEEeecCCCCcCcCCCCC
Q 026274 67 YRFSGANVVELGAGTSLPGLVAAKV--GSNVTLTDDSNRIEVLKNMRRVCEMNKLN----CRVMGLTWGFLDASIFDLNP 140 (241)
Q Consensus 67 ~~~~~~~VLElGcGtGl~sl~la~~--g~~V~~tD~~~~~~~l~~~~~n~~~n~~~----~~~~~l~w~~~~~~~~~~~f 140 (241)
....+.+|||+|||+|.+++.+++. +.+|+++|+++ .+++.+++|+..|++. +++...|..+ ...+.+|
T Consensus 219 ~~~~~~~VLDlGcG~G~~s~~la~~~p~~~V~gvD~s~--~al~~Ar~n~~~ngl~~~~~v~~~~~D~~~---~~~~~~f 293 (375)
T 4dcm_A 219 PENLEGEIVDLGCGNGVIGLTLLDKNPQAKVVFVDESP--MAVASSRLNVETNMPEALDRCEFMINNALS---GVEPFRF 293 (375)
T ss_dssp CCSCCSEEEEETCTTCHHHHHHHHHCTTCEEEEEESCH--HHHHHHHHHHHHHCGGGGGGEEEEECSTTT---TCCTTCE
T ss_pred cccCCCeEEEEeCcchHHHHHHHHHCCCCEEEEEECcH--HHHHHHHHHHHHcCCCcCceEEEEechhhc---cCCCCCe
Confidence 3345579999999999999999998 56999999995 7999999999998853 5555554443 3345689
Q ss_pred cEEEEcCCcCCC-----ccHHHHHHHHHHHhhcCCCeEEEEEeec
Q 026274 141 NIILGADVFYDA-----SAFDDLFATITYLLQSSPGSVFITTYHN 180 (241)
Q Consensus 141 DlIl~~dvly~~-----~~~~~ll~~~~~lL~~~~~~~~~~~~~~ 180 (241)
|+|+++.++++. .....+++.+.++|+ +||.+++....
T Consensus 294 D~Ii~nppfh~~~~~~~~~~~~~l~~~~~~Lk--pgG~l~iv~n~ 336 (375)
T 4dcm_A 294 NAVLCNPPFHQQHALTDNVAWEMFHHARRCLK--INGELYIVANR 336 (375)
T ss_dssp EEEEECCCC-------CCHHHHHHHHHHHHEE--EEEEEEEEEET
T ss_pred eEEEECCCcccCcccCHHHHHHHHHHHHHhCC--CCcEEEEEEEC
Confidence 999999988752 334578999999998 56666665443
|
| >3bxo_A N,N-dimethyltransferase; desosamine, sugar, carbohydrate, antibiotic, SAM, adoMet; HET: SAM UPP; 2.00A {Streptomyces venezuelae} | Back alignment and structure |
|---|
Probab=99.45 E-value=1.4e-12 Score=107.99 Aligned_cols=108 Identities=12% Similarity=0.096 Sum_probs=81.2
Q ss_pred HHHHHHHhccCCCCCCeEEEecCCCCHHHHHHHHhCCEEEEEcCCCcHHHHHHHHHHHHHcCCceEEEEeecCCCCcCcC
Q 026274 57 ILAEYVWQQRYRFSGANVVELGAGTSLPGLVAAKVGSNVTLTDDSNRIEVLKNMRRVCEMNKLNCRVMGLTWGFLDASIF 136 (241)
Q Consensus 57 ~L~~~l~~~~~~~~~~~VLElGcGtGl~sl~la~~g~~V~~tD~~~~~~~l~~~~~n~~~n~~~~~~~~l~w~~~~~~~~ 136 (241)
.+.+++.... .++.+|||+|||+|..+..+++.+.+|+++|+++ ++++.++++. .++++...+..+.. .
T Consensus 29 ~~~~~l~~~~--~~~~~vLdiG~G~G~~~~~l~~~~~~v~~~D~s~--~~~~~a~~~~----~~~~~~~~d~~~~~---~ 97 (239)
T 3bxo_A 29 DIADLVRSRT--PEASSLLDVACGTGTHLEHFTKEFGDTAGLELSE--DMLTHARKRL----PDATLHQGDMRDFR---L 97 (239)
T ss_dssp HHHHHHHHHC--TTCCEEEEETCTTSHHHHHHHHHHSEEEEEESCH--HHHHHHHHHC----TTCEEEECCTTTCC---C
T ss_pred HHHHHHHHhc--CCCCeEEEecccCCHHHHHHHHhCCcEEEEeCCH--HHHHHHHHhC----CCCEEEECCHHHcc---c
Confidence 3445554432 4668999999999999999999988999999995 6998888764 24666777665532 2
Q ss_pred CCCCcEEEE-cCCcCCC---ccHHHHHHHHHHHhhcCCCeEEEEE
Q 026274 137 DLNPNIILG-ADVFYDA---SAFDDLFATITYLLQSSPGSVFITT 177 (241)
Q Consensus 137 ~~~fDlIl~-~dvly~~---~~~~~ll~~~~~lL~~~~~~~~~~~ 177 (241)
+.+||+|++ .+++++. .....+++.+.++|+ |||.+++.
T Consensus 98 ~~~~D~v~~~~~~~~~~~~~~~~~~~l~~~~~~L~--pgG~l~~~ 140 (239)
T 3bxo_A 98 GRKFSAVVSMFSSVGYLKTTEELGAAVASFAEHLE--PGGVVVVE 140 (239)
T ss_dssp SSCEEEEEECTTGGGGCCSHHHHHHHHHHHHHTEE--EEEEEEEC
T ss_pred CCCCcEEEEcCchHhhcCCHHHHHHHHHHHHHhcC--CCeEEEEE
Confidence 568999995 5688776 566789999999998 55655553
|
| >1vlm_A SAM-dependent methyltransferase; possible histamine methyltransferase, structural genomics, JCSG, protein struc initiative, PSI; 2.20A {Thermotoga maritima} SCOP: c.66.1.41 | Back alignment and structure |
|---|
Probab=99.45 E-value=2.3e-12 Score=105.93 Aligned_cols=125 Identities=18% Similarity=0.114 Sum_probs=94.7
Q ss_pred CCeEEEecCCCCHHHHHHHHhCCEEEEEcCCCcHHHHHHHHHHHHHcCCceEEEEeecCCCCcCcCCCCCcEEEEcCCcC
Q 026274 71 GANVVELGAGTSLPGLVAAKVGSNVTLTDDSNRIEVLKNMRRVCEMNKLNCRVMGLTWGFLDASIFDLNPNIILGADVFY 150 (241)
Q Consensus 71 ~~~VLElGcGtGl~sl~la~~g~~V~~tD~~~~~~~l~~~~~n~~~n~~~~~~~~l~w~~~~~~~~~~~fDlIl~~dvly 150 (241)
+.+|||+|||+|..+..+++. +++|+++ ++++.++++ ++.+...+..+. +..+.+||+|++..+++
T Consensus 48 ~~~vLDiG~G~G~~~~~l~~~----~~vD~s~--~~~~~a~~~------~~~~~~~d~~~~--~~~~~~fD~v~~~~~l~ 113 (219)
T 1vlm_A 48 EGRGVEIGVGTGRFAVPLKIK----IGVEPSE--RMAEIARKR------GVFVLKGTAENL--PLKDESFDFALMVTTIC 113 (219)
T ss_dssp SSCEEEETCTTSTTHHHHTCC----EEEESCH--HHHHHHHHT------TCEEEECBTTBC--CSCTTCEEEEEEESCGG
T ss_pred CCcEEEeCCCCCHHHHHHHHH----hccCCCH--HHHHHHHhc------CCEEEEcccccC--CCCCCCeeEEEEcchHh
Confidence 789999999999998888765 9999995 688888876 456666665543 23346899999999999
Q ss_pred CCccHHHHHHHHHHHhhcCCCeEEEEEeeccC-----------------------chhHHHHHHHHcCCEEEEEecCCCC
Q 026274 151 DASAFDDLFATITYLLQSSPGSVFITTYHNRS-----------------------GHHLIEFLMVKWGLKCVKLVDGFSF 207 (241)
Q Consensus 151 ~~~~~~~ll~~~~~lL~~~~~~~~~~~~~~r~-----------------------~~~~~~~~~~~~g~~~~~i~~~~~~ 207 (241)
+.++...+++.+.++|+ +||.+++....+. +...+..++++.||+...+...+..
T Consensus 114 ~~~~~~~~l~~~~~~L~--pgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~Gf~~~~~~~~~~~ 191 (219)
T 1vlm_A 114 FVDDPERALKEAYRILK--KGGYLIVGIVDRESFLGREYEKNKEKSVFYKNARFFSTEELMDLMRKAGFEEFKVVQTLFK 191 (219)
T ss_dssp GSSCHHHHHHHHHHHEE--EEEEEEEEEECSSSHHHHHHHHTTTC-CCSTTCCCCCHHHHHHHHHHTTCEEEEEEEECCS
T ss_pred hccCHHHHHHHHHHHcC--CCcEEEEEEeCCccHHHHHHHHHhcCcchhcccccCCHHHHHHHHHHCCCeEEEEecccCC
Confidence 99999999999999998 5676666533221 2344566778999999888655544
Q ss_pred CCcc
Q 026274 208 LPHY 211 (241)
Q Consensus 208 ~p~~ 211 (241)
.|..
T Consensus 192 ~p~~ 195 (219)
T 1vlm_A 192 HPSE 195 (219)
T ss_dssp CGGG
T ss_pred CCCc
Confidence 4443
|
| >3dxy_A TRNA (guanine-N(7)-)-methyltransferase; rossmann fold methyltransferase, tRNA modification, S-adenosyl-L-methionine, TR processing; HET: SAM; 1.50A {Escherichia coli} PDB: 3dxx_A* 3dxz_A* | Back alignment and structure |
|---|
Probab=99.43 E-value=4.7e-13 Score=110.87 Aligned_cols=137 Identities=17% Similarity=0.049 Sum_probs=94.1
Q ss_pred CCCeEEEecCCCCHHHHHHHHhC--CEEEEEcCCCcHHHHHHHHHHHHHcCC-ceEEEEeecCCCCc-CcCCCCCcEEEE
Q 026274 70 SGANVVELGAGTSLPGLVAAKVG--SNVTLTDDSNRIEVLKNMRRVCEMNKL-NCRVMGLTWGFLDA-SIFDLNPNIILG 145 (241)
Q Consensus 70 ~~~~VLElGcGtGl~sl~la~~g--~~V~~tD~~~~~~~l~~~~~n~~~n~~-~~~~~~l~w~~~~~-~~~~~~fDlIl~ 145 (241)
.+.+|||||||+|..++.+|+.. .+|+++|+++ ++++.+++++..+++ ++++...|..+... ...+.+||.|++
T Consensus 34 ~~~~vLDiGcG~G~~~~~lA~~~p~~~v~giD~s~--~~l~~a~~~~~~~~l~nv~~~~~Da~~~l~~~~~~~~~d~v~~ 111 (218)
T 3dxy_A 34 EAPVTLEIGFGMGASLVAMAKDRPEQDFLGIEVHS--PGVGACLASAHEEGLSNLRVMCHDAVEVLHKMIPDNSLRMVQL 111 (218)
T ss_dssp CCCEEEEESCTTCHHHHHHHHHCTTSEEEEECSCH--HHHHHHHHHHHHTTCSSEEEECSCHHHHHHHHSCTTCEEEEEE
T ss_pred CCCeEEEEeeeChHHHHHHHHHCCCCeEEEEEecH--HHHHHHHHHHHHhCCCcEEEEECCHHHHHHHHcCCCChheEEE
Confidence 56789999999999999999874 4899999995 799999999988876 57776665443211 133568999998
Q ss_pred c--CCcCCCccH------HHHHHHHHHHhhcCCCeEEEEEeeccCchhHH-HHHHHHcCCEEEEEecCCCCCCc
Q 026274 146 A--DVFYDASAF------DDLFATITYLLQSSPGSVFITTYHNRSGHHLI-EFLMVKWGLKCVKLVDGFSFLPH 210 (241)
Q Consensus 146 ~--dvly~~~~~------~~ll~~~~~lL~~~~~~~~~~~~~~r~~~~~~-~~~~~~~g~~~~~i~~~~~~~p~ 210 (241)
. |+.+..... ..+++.+.++|+ |||.+++........... ..+....+|......++|...|+
T Consensus 112 ~~~~p~~~~~~~~rr~~~~~~l~~~~r~Lk--pGG~l~i~td~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 183 (218)
T 3dxy_A 112 FFPDPWHKARHNKRRIVQVPFAELVKSKLQ--LGGVFHMATDWEPYAEHMLEVMSSIDGYKNLSESNDYVPRPA 183 (218)
T ss_dssp ESCCCCCSGGGGGGSSCSHHHHHHHHHHEE--EEEEEEEEESCHHHHHHHHHHHHTSTTEEECCTTSSCBCCCT
T ss_pred eCCCCccchhhhhhhhhhHHHHHHHHHHcC--CCcEEEEEeCCHHHHHHHHHHHHhCCCcccccCcCccCCCCC
Confidence 7 555443332 369999999999 678777776554333322 23334456665443344444443
|
| >1fbn_A MJ fibrillarin homologue; MJ proteins, ribosomal RNA processing, snoRNP, structural genomics, BSGC structure funded by NIH; 1.60A {Methanocaldococcus jannaschii} SCOP: c.66.1.3 PDB: 1g8s_A | Back alignment and structure |
|---|
Probab=99.43 E-value=7.6e-12 Score=103.85 Aligned_cols=127 Identities=16% Similarity=0.149 Sum_probs=88.6
Q ss_pred CCCCCeEEEecCCCCHHHHHHHHh-C-CEEEEEcCCCcHHHHHHHHHHHHHcCCceEEEEeecCCCCc-CcCCCCCcEEE
Q 026274 68 RFSGANVVELGAGTSLPGLVAAKV-G-SNVTLTDDSNRIEVLKNMRRVCEMNKLNCRVMGLTWGFLDA-SIFDLNPNIIL 144 (241)
Q Consensus 68 ~~~~~~VLElGcGtGl~sl~la~~-g-~~V~~tD~~~~~~~l~~~~~n~~~n~~~~~~~~l~w~~~~~-~~~~~~fDlIl 144 (241)
..++.+|||+|||+|..++.+++. | .+|+++|+++ ++++.+++|+..+ .++.+...+..+... .....+||+|+
T Consensus 72 ~~~~~~VLDlGcG~G~~~~~la~~~~~~~v~gvD~s~--~~~~~a~~~~~~~-~~v~~~~~d~~~~~~~~~~~~~~D~v~ 148 (230)
T 1fbn_A 72 IKRDSKILYLGASAGTTPSHVADIADKGIVYAIEYAP--RIMRELLDACAER-ENIIPILGDANKPQEYANIVEKVDVIY 148 (230)
T ss_dssp CCTTCEEEEESCCSSHHHHHHHHHTTTSEEEEEESCH--HHHHHHHHHTTTC-TTEEEEECCTTCGGGGTTTSCCEEEEE
T ss_pred CCCCCEEEEEcccCCHHHHHHHHHcCCcEEEEEECCH--HHHHHHHHHhhcC-CCeEEEECCCCCcccccccCccEEEEE
Confidence 346789999999999999999987 4 5999999995 7999999988766 567776666654211 11125899999
Q ss_pred EcCCcCCCccHHHHHHHHHHHhhcCCCeEEEEEeeccC---c-------hhHHHHHHHHcCCEEEEEe
Q 026274 145 GADVFYDASAFDDLFATITYLLQSSPGSVFITTYHNRS---G-------HHLIEFLMVKWGLKCVKLV 202 (241)
Q Consensus 145 ~~dvly~~~~~~~ll~~~~~lL~~~~~~~~~~~~~~r~---~-------~~~~~~~~~~~g~~~~~i~ 202 (241)
. ++ ..+.....+++.+.++|+ |||.+++....+. . ...+. .+++.||+.....
T Consensus 149 ~-~~-~~~~~~~~~l~~~~~~Lk--pgG~l~i~~~~~~~~~~~~~~~~~~~~l~-~l~~~Gf~~~~~~ 211 (230)
T 1fbn_A 149 E-DV-AQPNQAEILIKNAKWFLK--KGGYGMIAIKARSIDVTKDPKEIFKEQKE-ILEAGGFKIVDEV 211 (230)
T ss_dssp E-CC-CSTTHHHHHHHHHHHHEE--EEEEEEEEEEGGGTCSSSCHHHHHHHHHH-HHHHHTEEEEEEE
T ss_pred E-ec-CChhHHHHHHHHHHHhCC--CCcEEEEEEecCCCCCCCCHHHhhHHHHH-HHHHCCCEEEEEE
Confidence 2 22 223334788999999998 6676666543221 1 12333 5678899887764
|
| >1o54_A SAM-dependent O-methyltransferase; TM0748, structural genomi PSI, protein structure initiative, joint center for structu genomics; 1.65A {Thermotoga maritima} SCOP: c.66.1.13 | Back alignment and structure |
|---|
Probab=99.43 E-value=6.3e-12 Score=107.22 Aligned_cols=126 Identities=11% Similarity=0.020 Sum_probs=93.0
Q ss_pred CCCCCCeEEEecCCCCHHHHHHHHh---CCEEEEEcCCCcHHHHHHHHHHHHHcCC--ceEEEEeecCCCCcCcCCCCCc
Q 026274 67 YRFSGANVVELGAGTSLPGLVAAKV---GSNVTLTDDSNRIEVLKNMRRVCEMNKL--NCRVMGLTWGFLDASIFDLNPN 141 (241)
Q Consensus 67 ~~~~~~~VLElGcGtGl~sl~la~~---g~~V~~tD~~~~~~~l~~~~~n~~~n~~--~~~~~~l~w~~~~~~~~~~~fD 141 (241)
...++.+|||+|||+|.+++.+++. +.+|+++|+++ ++++.+++|+..++. ++.+...|+.+. ..+.+||
T Consensus 109 ~~~~~~~VLDiG~G~G~~~~~la~~~~~~~~v~~vD~s~--~~~~~a~~~~~~~~~~~~v~~~~~d~~~~---~~~~~~D 183 (277)
T 1o54_A 109 DVKEGDRIIDTGVGSGAMCAVLARAVGSSGKVFAYEKRE--EFAKLAESNLTKWGLIERVTIKVRDISEG---FDEKDVD 183 (277)
T ss_dssp TCCTTCEEEEECCTTSHHHHHHHHHTTTTCEEEEECCCH--HHHHHHHHHHHHTTCGGGEEEECCCGGGC---CSCCSEE
T ss_pred CCCCCCEEEEECCcCCHHHHHHHHHhCCCcEEEEEECCH--HHHHHHHHHHHHcCCCCCEEEEECCHHHc---ccCCccC
Confidence 3456789999999999999999987 45999999995 799999999998876 566666666543 2335799
Q ss_pred EEEEcCCcCCCccHHHHHHHHHHHhhcCCCeEEEEEeeccCchhHHHHHHHHcCCEEEEEecC
Q 026274 142 IILGADVFYDASAFDDLFATITYLLQSSPGSVFITTYHNRSGHHLIEFLMVKWGLKCVKLVDG 204 (241)
Q Consensus 142 lIl~~dvly~~~~~~~ll~~~~~lL~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~i~~~ 204 (241)
+|++ +.+....+++.+.++|+ ++|.+++..............+++.||....+.+.
T Consensus 184 ~V~~-----~~~~~~~~l~~~~~~L~--pgG~l~~~~~~~~~~~~~~~~l~~~gf~~~~~~~~ 239 (277)
T 1o54_A 184 ALFL-----DVPDPWNYIDKCWEALK--GGGRFATVCPTTNQVQETLKKLQELPFIRIEVWES 239 (277)
T ss_dssp EEEE-----CCSCGGGTHHHHHHHEE--EEEEEEEEESSHHHHHHHHHHHHHSSEEEEEEECC
T ss_pred EEEE-----CCcCHHHHHHHHHHHcC--CCCEEEEEeCCHHHHHHHHHHHHHCCCceeEEEEE
Confidence 9997 34566788999999998 66766665543222222333456699988777543
|
| >3lbf_A Protein-L-isoaspartate O-methyltransferase; modified rossman-type fold, S-adenosyl-L- methionine; HET: SAH; 1.80A {Escherichia coli} | Back alignment and structure |
|---|
Probab=99.43 E-value=1.4e-12 Score=106.31 Aligned_cols=116 Identities=11% Similarity=0.021 Sum_probs=87.9
Q ss_pred eccHHHHHHHHHhccCCCCCCeEEEecCCCCHHHHHHHHhCCEEEEEcCCCcHHHHHHHHHHHHHcCC-ceEEEEeecCC
Q 026274 52 WPCSVILAEYVWQQRYRFSGANVVELGAGTSLPGLVAAKVGSNVTLTDDSNRIEVLKNMRRVCEMNKL-NCRVMGLTWGF 130 (241)
Q Consensus 52 W~~s~~L~~~l~~~~~~~~~~~VLElGcGtGl~sl~la~~g~~V~~tD~~~~~~~l~~~~~n~~~n~~-~~~~~~l~w~~ 130 (241)
|...... ..+.......++.+|||+|||+|..+..+++.+.+|+++|+++ ++++.+++|+..++. ++++...|+.+
T Consensus 60 ~~~~~~~-~~~~~~l~~~~~~~vLdiG~G~G~~~~~la~~~~~v~~vD~~~--~~~~~a~~~~~~~~~~~v~~~~~d~~~ 136 (210)
T 3lbf_A 60 ISQPYMV-ARMTELLELTPQSRVLEIGTGSGYQTAILAHLVQHVCSVERIK--GLQWQARRRLKNLDLHNVSTRHGDGWQ 136 (210)
T ss_dssp ECCHHHH-HHHHHHTTCCTTCEEEEECCTTSHHHHHHHHHSSEEEEEESCH--HHHHHHHHHHHHTTCCSEEEEESCGGG
T ss_pred eCCHHHH-HHHHHhcCCCCCCEEEEEcCCCCHHHHHHHHhCCEEEEEecCH--HHHHHHHHHHHHcCCCceEEEECCccc
Confidence 4343333 4444434455788999999999999999999989999999995 799999999988775 47777777655
Q ss_pred CCcCcCCCCCcEEEEcCCcCCCccHHHHHHHHHHHhhcCCCeEEEEEeec
Q 026274 131 LDASIFDLNPNIILGADVFYDASAFDDLFATITYLLQSSPGSVFITTYHN 180 (241)
Q Consensus 131 ~~~~~~~~~fDlIl~~dvly~~~~~~~ll~~~~~lL~~~~~~~~~~~~~~ 180 (241)
... ...+||+|+++.++.+... .+.++|+ +||.+++....
T Consensus 137 ~~~--~~~~~D~i~~~~~~~~~~~------~~~~~L~--pgG~lv~~~~~ 176 (210)
T 3lbf_A 137 GWQ--ARAPFDAIIVTAAPPEIPT------ALMTQLD--EGGILVLPVGE 176 (210)
T ss_dssp CCG--GGCCEEEEEESSBCSSCCT------HHHHTEE--EEEEEEEEECS
T ss_pred CCc--cCCCccEEEEccchhhhhH------HHHHhcc--cCcEEEEEEcC
Confidence 322 2458999999998887653 5788888 67777777655
|
| >3mb5_A SAM-dependent methyltransferase; RNA methyltransferase, M1A, TRMI, intermolecular contacts, R specificity, tetramer, disulfide bond; HET: SAM; 1.60A {Pyrococcus abyssi} PDB: 3lga_A* 3lhd_C* | Back alignment and structure |
|---|
Probab=99.43 E-value=1.2e-12 Score=109.97 Aligned_cols=132 Identities=12% Similarity=0.063 Sum_probs=96.8
Q ss_pred HHHhccCCCCCCeEEEecCCCCHHHHHHHHh---CCEEEEEcCCCcHHHHHHHHHHHHHcCCc--eEEEEeecCCCCcCc
Q 026274 61 YVWQQRYRFSGANVVELGAGTSLPGLVAAKV---GSNVTLTDDSNRIEVLKNMRRVCEMNKLN--CRVMGLTWGFLDASI 135 (241)
Q Consensus 61 ~l~~~~~~~~~~~VLElGcGtGl~sl~la~~---g~~V~~tD~~~~~~~l~~~~~n~~~n~~~--~~~~~l~w~~~~~~~ 135 (241)
++.......++.+|||+|||+|..++.+++. +.+|+++|+++ ++++.+++|++.++.. +++...|+.+. .
T Consensus 84 ~i~~~~~~~~~~~vldiG~G~G~~~~~l~~~~~~~~~v~~~D~~~--~~~~~a~~~~~~~~~~~~v~~~~~d~~~~---~ 158 (255)
T 3mb5_A 84 LIVAYAGISPGDFIVEAGVGSGALTLFLANIVGPEGRVVSYEIRE--DFAKLAWENIKWAGFDDRVTIKLKDIYEG---I 158 (255)
T ss_dssp HHHHHTTCCTTCEEEEECCTTSHHHHHHHHHHCTTSEEEEECSCH--HHHHHHHHHHHHHTCTTTEEEECSCGGGC---C
T ss_pred HHHHhhCCCCCCEEEEecCCchHHHHHHHHHhCCCeEEEEEecCH--HHHHHHHHHHHHcCCCCceEEEECchhhc---c
Confidence 3433344557889999999999999999998 56999999995 7999999999988763 67776666543 3
Q ss_pred CCCCCcEEEEcCCcCCCccHHHHHHHHHHHhhcCCCeEEEEEeeccCchhHHHHHHHHcC--CEEEEEecC
Q 026274 136 FDLNPNIILGADVFYDASAFDDLFATITYLLQSSPGSVFITTYHNRSGHHLIEFLMVKWG--LKCVKLVDG 204 (241)
Q Consensus 136 ~~~~fDlIl~~dvly~~~~~~~ll~~~~~lL~~~~~~~~~~~~~~r~~~~~~~~~~~~~g--~~~~~i~~~ 204 (241)
.+.+||+|++ +.+....+++.+.++|+ +||.+++..............+++.| |....+.+.
T Consensus 159 ~~~~~D~v~~-----~~~~~~~~l~~~~~~L~--~gG~l~~~~~~~~~~~~~~~~l~~~g~~f~~~~~~e~ 222 (255)
T 3mb5_A 159 EEENVDHVIL-----DLPQPERVVEHAAKALK--PGGFFVAYTPCSNQVMRLHEKLREFKDYFMKPRTINV 222 (255)
T ss_dssp CCCSEEEEEE-----CSSCGGGGHHHHHHHEE--EEEEEEEEESSHHHHHHHHHHHHHTGGGBSCCEEECC
T ss_pred CCCCcCEEEE-----CCCCHHHHHHHHHHHcC--CCCEEEEEECCHHHHHHHHHHHHHcCCCccccEEEEE
Confidence 3457999997 35566788999999998 56766655443333333444567788 877666443
|
| >2gs9_A Hypothetical protein TT1324; methyl transferase, structural genomics, NPPSFA, national PR protein structural and functional analyses; HET: SAH; 2.60A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=99.42 E-value=2.1e-12 Score=105.17 Aligned_cols=99 Identities=15% Similarity=0.108 Sum_probs=79.7
Q ss_pred CCCeEEEecCCCCHHHHHHHHhCC-EEEEEcCCCcHHHHHHHHHHHHHcCCceEEEEeecCCCCcCcCCCCCcEEEEcCC
Q 026274 70 SGANVVELGAGTSLPGLVAAKVGS-NVTLTDDSNRIEVLKNMRRVCEMNKLNCRVMGLTWGFLDASIFDLNPNIILGADV 148 (241)
Q Consensus 70 ~~~~VLElGcGtGl~sl~la~~g~-~V~~tD~~~~~~~l~~~~~n~~~n~~~~~~~~l~w~~~~~~~~~~~fDlIl~~dv 148 (241)
++.+|||+|||+|..+..+ +. +|+++|+++ ++++.++++. .++.+...+..+. +..+++||+|+++.+
T Consensus 36 ~~~~vLdiG~G~G~~~~~l---~~~~v~~vD~s~--~~~~~a~~~~----~~~~~~~~d~~~~--~~~~~~fD~v~~~~~ 104 (211)
T 2gs9_A 36 PGESLLEVGAGTGYWLRRL---PYPQKVGVEPSE--AMLAVGRRRA----PEATWVRAWGEAL--PFPGESFDVVLLFTT 104 (211)
T ss_dssp CCSEEEEETCTTCHHHHHC---CCSEEEEECCCH--HHHHHHHHHC----TTSEEECCCTTSC--CSCSSCEEEEEEESC
T ss_pred CCCeEEEECCCCCHhHHhC---CCCeEEEEeCCH--HHHHHHHHhC----CCcEEEEcccccC--CCCCCcEEEEEEcCh
Confidence 7789999999999988877 77 999999995 6998888876 3455666665543 233568999999999
Q ss_pred cCCCccHHHHHHHHHHHhhcCCCeEEEEEeecc
Q 026274 149 FYDASAFDDLFATITYLLQSSPGSVFITTYHNR 181 (241)
Q Consensus 149 ly~~~~~~~ll~~~~~lL~~~~~~~~~~~~~~r 181 (241)
+++.++...+++.+.++|+ |||.+++....+
T Consensus 105 l~~~~~~~~~l~~~~~~L~--pgG~l~i~~~~~ 135 (211)
T 2gs9_A 105 LEFVEDVERVLLEARRVLR--PGGALVVGVLEA 135 (211)
T ss_dssp TTTCSCHHHHHHHHHHHEE--EEEEEEEEEECT
T ss_pred hhhcCCHHHHHHHHHHHcC--CCCEEEEEecCC
Confidence 9999999999999999998 667766665444
|
| >3u81_A Catechol O-methyltransferase; neurotransmitter degradation, transferase transferase inhibitor complex; HET: SAH; 1.13A {Rattus norvegicus} SCOP: c.66.1.1 PDB: 3nwe_A* 3oe5_A* 3ozr_A* 3oe4_A* 3ozt_A* 3ozs_A* 3r6t_A* 3hvi_A* 1jr4_A* 1vid_A* 1h1d_A* 2cl5_A* 3hvh_A* 3hvj_A* 3hvk_A* 3nw9_A* 3nwb_A* 3s68_A* 2zlb_A 2zth_A* ... | Back alignment and structure |
|---|
Probab=99.41 E-value=7.9e-13 Score=109.09 Aligned_cols=128 Identities=13% Similarity=0.142 Sum_probs=90.0
Q ss_pred CCCCeEEEecCCCCHHHHHHHHh---CCEEEEEcCCCcHHHHHHHHHHHHHcCCc--eEEEEeecCCCCcCcC----CCC
Q 026274 69 FSGANVVELGAGTSLPGLVAAKV---GSNVTLTDDSNRIEVLKNMRRVCEMNKLN--CRVMGLTWGFLDASIF----DLN 139 (241)
Q Consensus 69 ~~~~~VLElGcGtGl~sl~la~~---g~~V~~tD~~~~~~~l~~~~~n~~~n~~~--~~~~~l~w~~~~~~~~----~~~ 139 (241)
.++++|||||||+|..++.+++. +++|+++|+++ ++++.+++|++.++.. +++...++.+...... ..+
T Consensus 57 ~~~~~vLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~--~~~~~a~~~~~~~~~~~~v~~~~~d~~~~l~~~~~~~~~~~ 134 (221)
T 3u81_A 57 YSPSLVLELGAYCGYSAVRMARLLQPGARLLTMEINP--DCAAITQQMLNFAGLQDKVTILNGASQDLIPQLKKKYDVDT 134 (221)
T ss_dssp HCCSEEEEECCTTSHHHHHHHTTSCTTCEEEEEESCH--HHHHHHHHHHHHHTCGGGEEEEESCHHHHGGGTTTTSCCCC
T ss_pred cCCCEEEEECCCCCHHHHHHHHhCCCCCEEEEEeCCh--HHHHHHHHHHHHcCCCCceEEEECCHHHHHHHHHHhcCCCc
Confidence 46689999999999999999984 66999999995 7999999999988874 7777776544322221 158
Q ss_pred CcEEEEcCCcCCCccHHHHHHHHHHHhhcCCCeEEEEEeeccCc-hhHHHHHHHHcCCEEEEE
Q 026274 140 PNIILGADVFYDASAFDDLFATITYLLQSSPGSVFITTYHNRSG-HHLIEFLMVKWGLKCVKL 201 (241)
Q Consensus 140 fDlIl~~dvly~~~~~~~ll~~~~~lL~~~~~~~~~~~~~~r~~-~~~~~~~~~~~g~~~~~i 201 (241)
||+|++.....+......++..+ ++|+ |||++++....... ....+.+.+.-+|....+
T Consensus 135 fD~V~~d~~~~~~~~~~~~~~~~-~~Lk--pgG~lv~~~~~~~~~~~~~~~l~~~~~~~~~~~ 194 (221)
T 3u81_A 135 LDMVFLDHWKDRYLPDTLLLEKC-GLLR--KGTVLLADNVIVPGTPDFLAYVRGSSSFECTHY 194 (221)
T ss_dssp CSEEEECSCGGGHHHHHHHHHHT-TCCC--TTCEEEESCCCCCCCHHHHHHHHHCTTEEEEEE
T ss_pred eEEEEEcCCcccchHHHHHHHhc-cccC--CCeEEEEeCCCCcchHHHHHHHhhCCCceEEEc
Confidence 99999876555444444556666 8887 67777766444333 334444555556766655
|
| >2pwy_A TRNA (adenine-N(1)-)-methyltransferase; mtase, adoMet, TRMI, tRNA-M1A58; HET: SAH; 1.70A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=99.40 E-value=3.4e-12 Score=107.05 Aligned_cols=127 Identities=13% Similarity=0.031 Sum_probs=92.7
Q ss_pred cCCCCCCeEEEecCCCCHHHHHHHHh---CCEEEEEcCCCcHHHHHHHHHHHHHc-C-CceEEEEeecCCCCcCcCCCCC
Q 026274 66 RYRFSGANVVELGAGTSLPGLVAAKV---GSNVTLTDDSNRIEVLKNMRRVCEMN-K-LNCRVMGLTWGFLDASIFDLNP 140 (241)
Q Consensus 66 ~~~~~~~~VLElGcGtGl~sl~la~~---g~~V~~tD~~~~~~~l~~~~~n~~~n-~-~~~~~~~l~w~~~~~~~~~~~f 140 (241)
....++.+|||+|||+|..++.+++. +.+|+++|+++ ++++.+++|++.+ + .++.+...|+.+. +..+.+|
T Consensus 92 ~~~~~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~~D~~~--~~~~~a~~~~~~~~g~~~v~~~~~d~~~~--~~~~~~~ 167 (258)
T 2pwy_A 92 LDLAPGMRVLEAGTGSGGLTLFLARAVGEKGLVESYEARP--HHLAQAERNVRAFWQVENVRFHLGKLEEA--ELEEAAY 167 (258)
T ss_dssp TTCCTTCEEEEECCTTSHHHHHHHHHHCTTSEEEEEESCH--HHHHHHHHHHHHHCCCCCEEEEESCGGGC--CCCTTCE
T ss_pred cCCCCCCEEEEECCCcCHHHHHHHHHhCCCCEEEEEeCCH--HHHHHHHHHHHHhcCCCCEEEEECchhhc--CCCCCCc
Confidence 34457789999999999999999997 56999999995 7999999999887 5 3567777766543 2334589
Q ss_pred cEEEEcCCcCCCccHHHHHHHHHHHhhcCCCeEEEEEeeccCchhHHHHHHHHcCCEEEEEec
Q 026274 141 NIILGADVFYDASAFDDLFATITYLLQSSPGSVFITTYHNRSGHHLIEFLMVKWGLKCVKLVD 203 (241)
Q Consensus 141 DlIl~~dvly~~~~~~~ll~~~~~lL~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~i~~ 203 (241)
|+|++ +.++...+++.+.++|+ +||.+++..............+++.||....+.+
T Consensus 168 D~v~~-----~~~~~~~~l~~~~~~L~--~gG~l~~~~~~~~~~~~~~~~l~~~gf~~~~~~~ 223 (258)
T 2pwy_A 168 DGVAL-----DLMEPWKVLEKAALALK--PDRFLVAYLPNITQVLELVRAAEAHPFRLERVLE 223 (258)
T ss_dssp EEEEE-----ESSCGGGGHHHHHHHEE--EEEEEEEEESCHHHHHHHHHHHTTTTEEEEEEEE
T ss_pred CEEEE-----CCcCHHHHHHHHHHhCC--CCCEEEEEeCCHHHHHHHHHHHHHCCCceEEEEE
Confidence 99997 34566788999999998 5666665544332222223345668998776643
|
| >3fzg_A 16S rRNA methylase; methyltransferase, plasmid, transferase; HET: SAM; 2.00A {Escherichia coli} | Back alignment and structure |
|---|
Probab=99.40 E-value=1e-13 Score=112.25 Aligned_cols=116 Identities=9% Similarity=0.037 Sum_probs=86.5
Q ss_pred ccHHHHHHHHHhccCCCCCCeEEEecCCCCHHHHHHHHh--CCEEEEEcCCCcHHHHHHHHHHHHHcCCceEEEEeecCC
Q 026274 53 PCSVILAEYVWQQRYRFSGANVVELGAGTSLPGLVAAKV--GSNVTLTDDSNRIEVLKNMRRVCEMNKLNCRVMGLTWGF 130 (241)
Q Consensus 53 ~~s~~L~~~l~~~~~~~~~~~VLElGcGtGl~sl~la~~--g~~V~~tD~~~~~~~l~~~~~n~~~n~~~~~~~~l~w~~ 130 (241)
|+-..+...+.... ....+|||||||+|.+++.++.. +++|+++|+|+ .|++.+++|+..++...++...+.
T Consensus 34 p~ld~fY~~~~~~l--~~~~~VLDlGCG~GplAl~l~~~~p~a~~~A~Di~~--~~leiar~~~~~~g~~~~v~~~d~-- 107 (200)
T 3fzg_A 34 ATLNDFYTYVFGNI--KHVSSILDFGCGFNPLALYQWNENEKIIYHAYDIDR--AEIAFLSSIIGKLKTTIKYRFLNK-- 107 (200)
T ss_dssp GGHHHHHHHHHHHS--CCCSEEEEETCTTHHHHHHHHCSSCCCEEEEECSCH--HHHHHHHHHHHHSCCSSEEEEECC--
T ss_pred HhHHHHHHHHHhhc--CCCCeEEEecCCCCHHHHHHHhcCCCCEEEEEeCCH--HHHHHHHHHHHhcCCCccEEEecc--
Confidence 44444444444332 24679999999999999999887 66999999995 799999999999988654444332
Q ss_pred CCcCcCCCCCcEEEEcCCcCCCccHHHHHHHHHHHhhcCCCeEEEEE
Q 026274 131 LDASIFDLNPNIILGADVFYDASAFDDLFATITYLLQSSPGSVFITT 177 (241)
Q Consensus 131 ~~~~~~~~~fDlIl~~dvly~~~~~~~ll~~~~~lL~~~~~~~~~~~ 177 (241)
.....+.+||+|++..++++.+..+..+..+.+.|+ ++++|+.-
T Consensus 108 -~~~~~~~~~DvVLa~k~LHlL~~~~~al~~v~~~L~--pggvfISf 151 (200)
T 3fzg_A 108 -ESDVYKGTYDVVFLLKMLPVLKQQDVNILDFLQLFH--TQNFVISF 151 (200)
T ss_dssp -HHHHTTSEEEEEEEETCHHHHHHTTCCHHHHHHTCE--EEEEEEEE
T ss_pred -cccCCCCCcChhhHhhHHHhhhhhHHHHHHHHHHhC--CCCEEEEe
Confidence 223345689999999999998777777778999998 55555533
|
| >3bt7_A TRNA (uracil-5-)-methyltransferase; methyluridine, methyltransferase, TRMA, RUMT; HET: 5MU; 2.43A {Escherichia coli} | Back alignment and structure |
|---|
Probab=99.40 E-value=1.3e-12 Score=116.49 Aligned_cols=146 Identities=14% Similarity=0.135 Sum_probs=98.3
Q ss_pred HHHHHHHHhccCCCCCCeEEEecCCCCHHHHHHHHhCCEEEEEcCCCcHHHHHHHHHHHHHcCC-ceEEEEeecCCCCcC
Q 026274 56 VILAEYVWQQRYRFSGANVVELGAGTSLPGLVAAKVGSNVTLTDDSNRIEVLKNMRRVCEMNKL-NCRVMGLTWGFLDAS 134 (241)
Q Consensus 56 ~~L~~~l~~~~~~~~~~~VLElGcGtGl~sl~la~~g~~V~~tD~~~~~~~l~~~~~n~~~n~~-~~~~~~l~w~~~~~~ 134 (241)
..+..++...... .+.+|||+|||+|.+++.+|+.+.+|+++|+++ ++++.+++|++.|++ ++++...|..+....
T Consensus 200 ~~l~~~~~~~~~~-~~~~vLDl~cG~G~~~l~la~~~~~V~gvd~~~--~ai~~a~~n~~~ng~~~v~~~~~d~~~~~~~ 276 (369)
T 3bt7_A 200 IQMLEWALDVTKG-SKGDLLELYCGNGNFSLALARNFDRVLATEIAK--PSVAAAQYNIAANHIDNVQIIRMAAEEFTQA 276 (369)
T ss_dssp HHHHHHHHHHTTT-CCSEEEEESCTTSHHHHHHGGGSSEEEEECCCH--HHHHHHHHHHHHTTCCSEEEECCCSHHHHHH
T ss_pred HHHHHHHHHHhhc-CCCEEEEccCCCCHHHHHHHhcCCEEEEEECCH--HHHHHHHHHHHHcCCCceEEEECCHHHHHHH
Confidence 5566666554332 357899999999999999999777999999995 799999999999987 567766554432111
Q ss_pred cCC--------------CCCcEEEEcCCcCCCccHHHHHHHHHHHhhcCCCeEEEEEeeccCchhHHHHHHHHcCCEEEE
Q 026274 135 IFD--------------LNPNIILGADVFYDASAFDDLFATITYLLQSSPGSVFITTYHNRSGHHLIEFLMVKWGLKCVK 200 (241)
Q Consensus 135 ~~~--------------~~fDlIl~~dvly~~~~~~~ll~~~~~lL~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~ 200 (241)
... .+||+|+...+... +.+.+.++|+ .++.++++++.+.........+.+ ||.+..
T Consensus 277 ~~~~~~~~~l~~~~~~~~~fD~Vv~dPPr~g------~~~~~~~~l~-~~g~ivyvsc~p~t~ard~~~l~~--~y~~~~ 347 (369)
T 3bt7_A 277 MNGVREFNRLQGIDLKSYQCETIFVDPPRSG------LDSETEKMVQ-AYPRILYISCNPETLCKNLETLSQ--THKVER 347 (369)
T ss_dssp HSSCCCCTTGGGSCGGGCCEEEEEECCCTTC------CCHHHHHHHT-TSSEEEEEESCHHHHHHHHHHHHH--HEEEEE
T ss_pred HhhccccccccccccccCCCCEEEECcCccc------cHHHHHHHHh-CCCEEEEEECCHHHHHHHHHHHhh--CcEEEE
Confidence 111 37999997554331 2233344454 467788888765444444444544 466655
Q ss_pred E--ecCCCCCCcccc
Q 026274 201 L--VDGFSFLPHYKA 213 (241)
Q Consensus 201 i--~~~~~~~p~~~~ 213 (241)
+ .+.|+.++|.+.
T Consensus 348 ~~~~D~FP~T~HvE~ 362 (369)
T 3bt7_A 348 LALFDQFPYTHHMQC 362 (369)
T ss_dssp EEEECCSTTSSCCEE
T ss_pred EEeeccCCCCCcEEE
Confidence 5 788887777653
|
| >1g6q_1 HnRNP arginine N-methyltransferase; SAM-binding domain, beta-barrel, mixed alpha-beta, hexamer; 2.90A {Saccharomyces cerevisiae} SCOP: c.66.1.6 | Back alignment and structure |
|---|
Probab=99.40 E-value=2.5e-12 Score=112.80 Aligned_cols=109 Identities=19% Similarity=0.245 Sum_probs=84.9
Q ss_pred HHHHhccCCCCCCeEEEecCCCCHHHHHHHHhCC-EEEEEcCCCcHHHHHHHHHHHHHcCC--ceEEEEeecCCCCcCcC
Q 026274 60 EYVWQQRYRFSGANVVELGAGTSLPGLVAAKVGS-NVTLTDDSNRIEVLKNMRRVCEMNKL--NCRVMGLTWGFLDASIF 136 (241)
Q Consensus 60 ~~l~~~~~~~~~~~VLElGcGtGl~sl~la~~g~-~V~~tD~~~~~~~l~~~~~n~~~n~~--~~~~~~l~w~~~~~~~~ 136 (241)
+.+.......++++|||+|||+|.+++.+++.|+ +|+++|+++ +++.+++++..|+. ++++...+..+.. ..
T Consensus 28 ~ai~~~~~~~~~~~VLDiGcGtG~ls~~la~~g~~~v~~vD~s~---~~~~a~~~~~~~~~~~~i~~~~~d~~~~~--~~ 102 (328)
T 1g6q_1 28 NAIIQNKDLFKDKIVLDVGCGTGILSMFAAKHGAKHVIGVDMSS---IIEMAKELVELNGFSDKITLLRGKLEDVH--LP 102 (328)
T ss_dssp HHHHHHHHHHTTCEEEEETCTTSHHHHHHHHTCCSEEEEEESST---HHHHHHHHHHHTTCTTTEEEEESCTTTSC--CS
T ss_pred HHHHhhHhhcCCCEEEEecCccHHHHHHHHHCCCCEEEEEChHH---HHHHHHHHHHHcCCCCCEEEEECchhhcc--CC
Confidence 3343333445788999999999999999999987 899999994 89999999998886 4677776665542 23
Q ss_pred CCCCcEEEEcCCc---CCCccHHHHHHHHHHHhhcCCCeEEE
Q 026274 137 DLNPNIILGADVF---YDASAFDDLFATITYLLQSSPGSVFI 175 (241)
Q Consensus 137 ~~~fDlIl~~dvl---y~~~~~~~ll~~~~~lL~~~~~~~~~ 175 (241)
.++||+|++..+. .+...++.++..+.++|+ |||.++
T Consensus 103 ~~~~D~Ivs~~~~~~l~~~~~~~~~l~~~~~~Lk--pgG~li 142 (328)
T 1g6q_1 103 FPKVDIIISEWMGYFLLYESMMDTVLYARDHYLV--EGGLIF 142 (328)
T ss_dssp SSCEEEEEECCCBTTBSTTCCHHHHHHHHHHHEE--EEEEEE
T ss_pred CCcccEEEEeCchhhcccHHHHHHHHHHHHhhcC--CCeEEE
Confidence 3689999987543 456778899999999998 566665
|
| >3kr9_A SAM-dependent methyltransferase; class I rossmann-like methyltransferase fold; 2.00A {Streptococcus pneumoniae} PDB: 3ku1_A* | Back alignment and structure |
|---|
Probab=99.40 E-value=2.5e-12 Score=107.05 Aligned_cols=122 Identities=11% Similarity=0.025 Sum_probs=90.6
Q ss_pred CCCeEEEecCCCCHHHHHHHHhCC--EEEEEcCCCcHHHHHHHHHHHHHcCCc--eEEEEeecCCCCcCcCCCCCcEEEE
Q 026274 70 SGANVVELGAGTSLPGLVAAKVGS--NVTLTDDSNRIEVLKNMRRVCEMNKLN--CRVMGLTWGFLDASIFDLNPNIILG 145 (241)
Q Consensus 70 ~~~~VLElGcGtGl~sl~la~~g~--~V~~tD~~~~~~~l~~~~~n~~~n~~~--~~~~~l~w~~~~~~~~~~~fDlIl~ 145 (241)
++.+|||+|||+|.+++.+++.+. +|+++|+++ .+++.+++|++.|++. +++...|+.+...+ ..+||+|+.
T Consensus 15 ~g~~VlDIGtGsG~l~i~la~~~~~~~V~avDi~~--~al~~A~~N~~~~gl~~~i~~~~~d~l~~l~~--~~~~D~Ivi 90 (225)
T 3kr9_A 15 QGAILLDVGSDHAYLPIELVERGQIKSAIAGEVVE--GPYQSAVKNVEAHGLKEKIQVRLANGLAAFEE--TDQVSVITI 90 (225)
T ss_dssp TTEEEEEETCSTTHHHHHHHHTTSEEEEEEEESSH--HHHHHHHHHHHHTTCTTTEEEEECSGGGGCCG--GGCCCEEEE
T ss_pred CCCEEEEeCCCcHHHHHHHHHhCCCCEEEEEECCH--HHHHHHHHHHHHcCCCceEEEEECchhhhccc--CcCCCEEEE
Confidence 567999999999999999999874 799999995 7999999999999984 77777766433211 126998886
Q ss_pred cCCcCCCccHHHHHHHHHHHhhcCCCeEEEEEeeccCchhHHHHHHHHcCCEEEEE
Q 026274 146 ADVFYDASAFDDLFATITYLLQSSPGSVFITTYHNRSGHHLIEFLMVKWGLKCVKL 201 (241)
Q Consensus 146 ~dvly~~~~~~~ll~~~~~lL~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~i 201 (241)
+..- -..+..++......|+ +++.+++... .........+.++||.+..-
T Consensus 91 aG~G--g~~i~~Il~~~~~~L~--~~~~lVlq~~--~~~~~vr~~L~~~Gf~i~~e 140 (225)
T 3kr9_A 91 AGMG--GRLIARILEEGLGKLA--NVERLILQPN--NREDDLRIWLQDHGFQIVAE 140 (225)
T ss_dssp EEEC--HHHHHHHHHHTGGGCT--TCCEEEEEES--SCHHHHHHHHHHTTEEEEEE
T ss_pred cCCC--hHHHHHHHHHHHHHhC--CCCEEEEECC--CCHHHHHHHHHHCCCEEEEE
Confidence 5431 1246778888888887 5566666544 34455666677899988764
|
| >2vdw_A Vaccinia virus capping enzyme D1 subunit; nucleotidyltransferase, S-adenosyl-L-methionine, RNA metabolism, mRNA processing, methyltransferase, poxvirus; HET: SAH; 2.70A {Vaccinia virus} | Back alignment and structure |
|---|
Probab=99.39 E-value=1.2e-12 Score=113.62 Aligned_cols=126 Identities=10% Similarity=-0.015 Sum_probs=84.4
Q ss_pred EeccHHHHHHHHHhccC-CCCCCeEEEecCCCCHHHHHHHHh-CCEEEEEcCCCcHHHHHHHHHHHHHcCCc-------e
Q 026274 51 VWPCSVILAEYVWQQRY-RFSGANVVELGAGTSLPGLVAAKV-GSNVTLTDDSNRIEVLKNMRRVCEMNKLN-------C 121 (241)
Q Consensus 51 ~W~~s~~L~~~l~~~~~-~~~~~~VLElGcGtGl~sl~la~~-g~~V~~tD~~~~~~~l~~~~~n~~~n~~~-------~ 121 (241)
-|-.+..+..|+..... ...+.+|||||||+|.....+++. +++|+|+|+|+ +|++.+++.....+.. +
T Consensus 28 n~vks~li~~~~~~~~~~~~~~~~VLDlGCG~G~~l~~~~~~~~~~v~GiD~S~--~~l~~A~~~~~~~~~~~~~~~~~~ 105 (302)
T 2vdw_A 28 NYVKTLLISMYCSKTFLDDSNKRKVLAIDFGNGADLEKYFYGEIALLVATDPDA--DAIARGNERYNKLNSGIKTKYYKF 105 (302)
T ss_dssp HHHHHHHHHHHTCTTTSSCCSCCEEEETTCTTTTTHHHHHHTTCSEEEEEESCH--HHHHHHHHHHHHHCC----CCCEE
T ss_pred HHHHHHHHHHHHhhhhhccCCCCeEEEEecCCcHhHHHHHhcCCCeEEEEECCH--HHHHHHHHHHHhcccccccccccc
Confidence 35555555555432211 124789999999999644444444 56999999995 7999999887665542 3
Q ss_pred EEEEeecCCCC------cCcCCCCCcEEEEcCCcCC---CccHHHHHHHHHHHhhcCCCeEEEEEeec
Q 026274 122 RVMGLTWGFLD------ASIFDLNPNIILGADVFYD---ASAFDDLFATITYLLQSSPGSVFITTYHN 180 (241)
Q Consensus 122 ~~~~l~w~~~~------~~~~~~~fDlIl~~dvly~---~~~~~~ll~~~~~lL~~~~~~~~~~~~~~ 180 (241)
++...+..... ....+++||+|++..++++ ......+++.+.++|+ |||.+++....
T Consensus 106 ~f~~~d~~~d~~~~~l~~~~~~~~FD~V~~~~~lhy~~~~~~~~~~l~~~~r~Lk--pGG~~i~~~~~ 171 (302)
T 2vdw_A 106 DYIQETIRSDTFVSSVREVFYFGKFNIIDWQFAIHYSFHPRHYATVMNNLSELTA--SGGKVLITTMD 171 (302)
T ss_dssp EEEECCTTSSSHHHHHHTTCCSSCEEEEEEESCGGGTCSTTTHHHHHHHHHHHEE--EEEEEEEEEEC
T ss_pred chhhhhcccchhhhhhhccccCCCeeEEEECchHHHhCCHHHHHHHHHHHHHHcC--CCCEEEEEeCC
Confidence 44444432111 1123468999999998854 3567899999999999 67877776544
|
| >2h00_A Methyltransferase 10 domain containing protein; structural genomics, structural genomics consortium, SGC; HET: SAH; 2.00A {Homo sapiens} SCOP: c.66.1.54 | Back alignment and structure |
|---|
Probab=99.39 E-value=2.3e-11 Score=102.16 Aligned_cols=81 Identities=14% Similarity=0.172 Sum_probs=62.9
Q ss_pred CCCeEEEecCCCCHHHHHHHHh--CCEEEEEcCCCcHHHHHHHHHHHHHcCCc--eEEEEeecCCC-CcCcC---CCCCc
Q 026274 70 SGANVVELGAGTSLPGLVAAKV--GSNVTLTDDSNRIEVLKNMRRVCEMNKLN--CRVMGLTWGFL-DASIF---DLNPN 141 (241)
Q Consensus 70 ~~~~VLElGcGtGl~sl~la~~--g~~V~~tD~~~~~~~l~~~~~n~~~n~~~--~~~~~l~w~~~-~~~~~---~~~fD 141 (241)
++.+|||+|||+|.+++.+++. +++|+++|+++ +|++.+++|+..+++. +++...|..+. ..... +.+||
T Consensus 65 ~~~~vLDlG~G~G~~~~~la~~~~~~~v~gvD~s~--~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~~fD 142 (254)
T 2h00_A 65 TLRRGIDIGTGASCIYPLLGATLNGWYFLATEVDD--MCFNYAKKNVEQNNLSDLIKVVKVPQKTLLMDALKEESEIIYD 142 (254)
T ss_dssp CCCEEEEESCTTTTHHHHHHHHHHCCEEEEEESCH--HHHHHHHHHHHHTTCTTTEEEEECCTTCSSTTTSTTCCSCCBS
T ss_pred CCCEEEEeCCChhHHHHHHHHhCCCCeEEEEECCH--HHHHHHHHHHHHcCCCccEEEEEcchhhhhhhhhhcccCCccc
Confidence 5779999999999999888876 67999999995 7999999999998874 77777775441 21222 25899
Q ss_pred EEEEcCCcCCC
Q 026274 142 IILGADVFYDA 152 (241)
Q Consensus 142 lIl~~dvly~~ 152 (241)
+|+++.+++..
T Consensus 143 ~i~~npp~~~~ 153 (254)
T 2h00_A 143 FCMCNPPFFAN 153 (254)
T ss_dssp EEEECCCCC--
T ss_pred EEEECCCCccC
Confidence 99998876643
|
| >4azs_A Methyltransferase WBDD; kinase; HET: AMP SAM; 2.15A {Escherichia coli} PDB: 4azt_A* 4azv_A* 4azw_A* | Back alignment and structure |
|---|
Probab=99.39 E-value=2.9e-13 Score=127.09 Aligned_cols=103 Identities=17% Similarity=0.141 Sum_probs=78.1
Q ss_pred CCCCeEEEecCCCCHHHHHHHHhCCEEEEEcCCCcHHHHHHHHHHHHHcC-CceEEEEeecCCCCcCcCCCCCcEEEEcC
Q 026274 69 FSGANVVELGAGTSLPGLVAAKVGSNVTLTDDSNRIEVLKNMRRVCEMNK-LNCRVMGLTWGFLDASIFDLNPNIILGAD 147 (241)
Q Consensus 69 ~~~~~VLElGcGtGl~sl~la~~g~~V~~tD~~~~~~~l~~~~~n~~~n~-~~~~~~~l~w~~~~~~~~~~~fDlIl~~d 147 (241)
.++.+|||||||+|+++..+|++|++|+|+|.++ .+++.++..+..++ .++++...+..+......+++||+|++.+
T Consensus 65 ~~~~~vLDvGCG~G~~~~~la~~ga~V~giD~~~--~~i~~a~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~fD~v~~~e 142 (569)
T 4azs_A 65 GRPLNVLDLGCAQGFFSLSLASKGATIVGIDFQQ--ENINVCRALAEENPDFAAEFRVGRIEEVIAALEEGEFDLAIGLS 142 (569)
T ss_dssp TSCCEEEEETCTTSHHHHHHHHTTCEEEEEESCH--HHHHHHHHHHHTSTTSEEEEEECCHHHHHHHCCTTSCSEEEEES
T ss_pred CCCCeEEEECCCCcHHHHHHHhCCCEEEEECCCH--HHHHHHHHHHHhcCCCceEEEECCHHHHhhhccCCCccEEEECc
Confidence 3567999999999999999999999999999995 69999999888776 68888877665543233356899999999
Q ss_pred CcCCCccHHHHH--HHHHHHhhcCCCeE
Q 026274 148 VFYDASAFDDLF--ATITYLLQSSPGSV 173 (241)
Q Consensus 148 vly~~~~~~~ll--~~~~~lL~~~~~~~ 173 (241)
+++|.++...+. ..+.+.|++++...
T Consensus 143 ~~ehv~~~~~~~~~~~~~~tl~~~~~~~ 170 (569)
T 4azs_A 143 VFHHIVHLHGIDEVKRLLSRLADVTQAV 170 (569)
T ss_dssp CHHHHHHHHCHHHHHHHHHHHHHHSSEE
T ss_pred chhcCCCHHHHHHHHHHHHHhcccccee
Confidence 999976554332 22334455444443
|
| >4df3_A Fibrillarin-like rRNA/TRNA 2'-O-methyltransferase; NADP rossmann superfamily, S-adenosyl-L-M (SAM) binding, nucleolus; HET: SAM; 1.73A {Aeropyrum pernix} | Back alignment and structure |
|---|
Probab=99.39 E-value=1.2e-11 Score=103.45 Aligned_cols=150 Identities=13% Similarity=0.117 Sum_probs=104.2
Q ss_pred CcceEEeccHH-HHHHHHHhc---cCCCCCCeEEEecCCCCHHHHHHHHh-CC--EEEEEcCCCcHHHHHHHHHHHHHcC
Q 026274 46 EYGLFVWPCSV-ILAEYVWQQ---RYRFSGANVVELGAGTSLPGLVAAKV-GS--NVTLTDDSNRIEVLKNMRRVCEMNK 118 (241)
Q Consensus 46 ~~g~~~W~~s~-~L~~~l~~~---~~~~~~~~VLElGcGtGl~sl~la~~-g~--~V~~tD~~~~~~~l~~~~~n~~~n~ 118 (241)
+...+.|+--. .|+..|... ....+|.+|||||||+|..+..+|+. |. +|+++|+++ +|++.++++++..+
T Consensus 49 ~~e~r~w~p~rsklaa~i~~gl~~l~ikpG~~VldlG~G~G~~~~~la~~VG~~G~V~avD~s~--~~~~~l~~~a~~~~ 126 (233)
T 4df3_A 49 GEEYREWNAYRSKLAAALLKGLIELPVKEGDRILYLGIASGTTASHMSDIIGPRGRIYGVEFAP--RVMRDLLTVVRDRR 126 (233)
T ss_dssp TEEEEECCTTTCHHHHHHHTTCSCCCCCTTCEEEEETCTTSHHHHHHHHHHCTTCEEEEEECCH--HHHHHHHHHSTTCT
T ss_pred CceeeeECCCchHHHHHHHhchhhcCCCCCCEEEEecCcCCHHHHHHHHHhCCCceEEEEeCCH--HHHHHHHHhhHhhc
Confidence 35688998755 556666543 24557999999999999999999985 54 899999995 79999988876543
Q ss_pred CceEEEEeecCCCCc-CcCCCCCcEEEEcCCcCCCccHHHHHHHHHHHhhcCCCeEEEEEeeccCc------hhHH---H
Q 026274 119 LNCRVMGLTWGFLDA-SIFDLNPNIILGADVFYDASAFDDLFATITYLLQSSPGSVFITTYHNRSG------HHLI---E 188 (241)
Q Consensus 119 ~~~~~~~l~w~~~~~-~~~~~~fDlIl~~dvly~~~~~~~ll~~~~~lL~~~~~~~~~~~~~~r~~------~~~~---~ 188 (241)
++.....+...... +.....+|+|++ | +.++.....+++.+.+.|| |||.+++....|.. ...+ .
T Consensus 127 -ni~~V~~d~~~p~~~~~~~~~vDvVf~-d-~~~~~~~~~~l~~~~r~LK--pGG~lvI~ik~r~~d~~~p~~~~~~~ev 201 (233)
T 4df3_A 127 -NIFPILGDARFPEKYRHLVEGVDGLYA-D-VAQPEQAAIVVRNARFFLR--DGGYMLMAIKARSIDVTTEPSEVYKREI 201 (233)
T ss_dssp -TEEEEESCTTCGGGGTTTCCCEEEEEE-C-CCCTTHHHHHHHHHHHHEE--EEEEEEEEEECCHHHHHTCCCHHHHHHH
T ss_pred -CeeEEEEeccCccccccccceEEEEEE-e-ccCChhHHHHHHHHHHhcc--CCCEEEEEEecccCCCCCChHHHHHHHH
Confidence 45555555544332 233458999885 4 4556777889999999999 66766665443322 1111 2
Q ss_pred HHHHHcCCEEEEEe
Q 026274 189 FLMVKWGLKCVKLV 202 (241)
Q Consensus 189 ~~~~~~g~~~~~i~ 202 (241)
..+++.||+.....
T Consensus 202 ~~L~~~GF~l~e~i 215 (233)
T 4df3_A 202 KTLMDGGLEIKDVV 215 (233)
T ss_dssp HHHHHTTCCEEEEE
T ss_pred HHHHHCCCEEEEEE
Confidence 23567899987763
|
| >3a27_A TYW2, uncharacterized protein MJ1557; wybutosine modification, transferase; HET: SAM; 2.00A {Methanocaldococcus jannaschii} | Back alignment and structure |
|---|
Probab=99.38 E-value=3.4e-12 Score=109.06 Aligned_cols=121 Identities=15% Similarity=0.055 Sum_probs=88.9
Q ss_pred CCCCCeEEEecCCCCHHHHHHHHhCC--EEEEEcCCCcHHHHHHHHHHHHHcCC-ceEEEEeecCCCCcCcCCCCCcEEE
Q 026274 68 RFSGANVVELGAGTSLPGLVAAKVGS--NVTLTDDSNRIEVLKNMRRVCEMNKL-NCRVMGLTWGFLDASIFDLNPNIIL 144 (241)
Q Consensus 68 ~~~~~~VLElGcGtGl~sl~la~~g~--~V~~tD~~~~~~~l~~~~~n~~~n~~-~~~~~~l~w~~~~~~~~~~~fDlIl 144 (241)
..++.+|||+|||+|.+++.+|+.+. +|+++|+++ ++++.+++|++.|++ ++.+...|..+. .. ..+||+|+
T Consensus 117 ~~~~~~VLDlgcG~G~~s~~la~~~~~~~V~~vD~s~--~av~~a~~n~~~n~l~~~~~~~~d~~~~-~~--~~~~D~Vi 191 (272)
T 3a27_A 117 SNENEVVVDMFAGIGYFTIPLAKYSKPKLVYAIEKNP--TAYHYLCENIKLNKLNNVIPILADNRDV-EL--KDVADRVI 191 (272)
T ss_dssp CCTTCEEEETTCTTTTTHHHHHHHTCCSEEEEEECCH--HHHHHHHHHHHHTTCSSEEEEESCGGGC-CC--TTCEEEEE
T ss_pred cCCCCEEEEecCcCCHHHHHHHHhCCCCEEEEEeCCH--HHHHHHHHHHHHcCCCCEEEEECChHHc-Cc--cCCceEEE
Confidence 34678999999999999999999853 999999995 799999999999987 567777776654 22 45899999
Q ss_pred EcCCcCCCccHHHHHHHHHHHhhcCCCeEEEEEeeccC-----c-hhHHHHHHHHcCCEEE
Q 026274 145 GADVFYDASAFDDLFATITYLLQSSPGSVFITTYHNRS-----G-HHLIEFLMVKWGLKCV 199 (241)
Q Consensus 145 ~~dvly~~~~~~~ll~~~~~lL~~~~~~~~~~~~~~r~-----~-~~~~~~~~~~~g~~~~ 199 (241)
+..+. ....++..+.++|+ |+|++++...... . ......+.+..|+.+.
T Consensus 192 ~d~p~----~~~~~l~~~~~~Lk--pgG~l~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 246 (272)
T 3a27_A 192 MGYVH----KTHKFLDKTFEFLK--DRGVIHYHETVAEKIMYERPIERLKFYAEKNGYKLI 246 (272)
T ss_dssp ECCCS----SGGGGHHHHHHHEE--EEEEEEEEEEEEGGGTTTHHHHHHHHHHHHTTEEEE
T ss_pred ECCcc----cHHHHHHHHHHHcC--CCCEEEEEEcCccccccccHHHHHHHHHHHhCCeeE
Confidence 87654 66678888889998 5666665544431 1 1223344455565554
|
| >2pxx_A Uncharacterized protein MGC2408; structural genomics consortium, SGC, methyltransferase, LOC84291, transferase; HET: SAH; 1.30A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.38 E-value=2e-12 Score=105.03 Aligned_cols=115 Identities=18% Similarity=0.182 Sum_probs=86.7
Q ss_pred HHHHHHHhccCCCCCCeEEEecCCCCHHHHHHHHhCC-EEEEEcCCCcHHHHHHHHHHHHHcCCceEEEEeecCCCCcCc
Q 026274 57 ILAEYVWQQRYRFSGANVVELGAGTSLPGLVAAKVGS-NVTLTDDSNRIEVLKNMRRVCEMNKLNCRVMGLTWGFLDASI 135 (241)
Q Consensus 57 ~L~~~l~~~~~~~~~~~VLElGcGtGl~sl~la~~g~-~V~~tD~~~~~~~l~~~~~n~~~n~~~~~~~~l~w~~~~~~~ 135 (241)
.+.+++.... .++.+|||+|||+|..+..+++.|. +|+++|+++ .+++.++++... ..++.+...+..+. +.
T Consensus 31 ~~~~~l~~~~--~~~~~vLdiGcG~G~~~~~l~~~~~~~v~~~D~s~--~~~~~a~~~~~~-~~~i~~~~~d~~~~--~~ 103 (215)
T 2pxx_A 31 SFRALLEPEL--RPEDRILVLGCGNSALSYELFLGGFPNVTSVDYSS--VVVAAMQACYAH-VPQLRWETMDVRKL--DF 103 (215)
T ss_dssp HHHHHHGGGC--CTTCCEEEETCTTCSHHHHHHHTTCCCEEEEESCH--HHHHHHHHHTTT-CTTCEEEECCTTSC--CS
T ss_pred HHHHHHHHhc--CCCCeEEEECCCCcHHHHHHHHcCCCcEEEEeCCH--HHHHHHHHhccc-CCCcEEEEcchhcC--CC
Confidence 3556665542 4677999999999999999999987 899999995 699999988764 23567777776553 33
Q ss_pred CCCCCcEEEEcCCcCCC---------------ccHHHHHHHHHHHhhcCCCeEEEEEeec
Q 026274 136 FDLNPNIILGADVFYDA---------------SAFDDLFATITYLLQSSPGSVFITTYHN 180 (241)
Q Consensus 136 ~~~~fDlIl~~dvly~~---------------~~~~~ll~~~~~lL~~~~~~~~~~~~~~ 180 (241)
.+.+||+|+++.++.+. .....+++.+.++|+ +||.+++....
T Consensus 104 ~~~~fD~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~Lk--pgG~li~~~~~ 161 (215)
T 2pxx_A 104 PSASFDVVLEKGTLDALLAGERDPWTVSSEGVHTVDQVLSEVSRVLV--PGGRFISMTSA 161 (215)
T ss_dssp CSSCEEEEEEESHHHHHTTTCSCTTSCCHHHHHHHHHHHHHHHHHEE--EEEEEEEEESC
T ss_pred CCCcccEEEECcchhhhccccccccccccchhHHHHHHHHHHHHhCc--CCCEEEEEeCC
Confidence 34689999998887442 366889999999998 56766655433
|
| >2aot_A HMT, histamine N-methyltransferase; classic methyltransferase fold, protein-drug complex; HET: CSO 2PM SAH; 1.90A {Homo sapiens} SCOP: c.66.1.19 PDB: 1jqd_A* 2aou_A* 2aov_A* 2aox_A* 1jqe_A* 2aow_A* | Back alignment and structure |
|---|
Probab=99.38 E-value=2.3e-12 Score=110.70 Aligned_cols=104 Identities=13% Similarity=0.150 Sum_probs=72.3
Q ss_pred CCCeEEEecCCCCHHHHHH----HHh--CCEE--EEEcCCCcHHHHHHHHHHHHHc-CC-ceEEE--EeecCCCCc----
Q 026274 70 SGANVVELGAGTSLPGLVA----AKV--GSNV--TLTDDSNRIEVLKNMRRVCEMN-KL-NCRVM--GLTWGFLDA---- 133 (241)
Q Consensus 70 ~~~~VLElGcGtGl~sl~l----a~~--g~~V--~~tD~~~~~~~l~~~~~n~~~n-~~-~~~~~--~l~w~~~~~---- 133 (241)
++.+|||||||+|.++..+ +.. +..| +++|.|+ +|++.+++++... ++ ++.+. ..+..+...
T Consensus 52 ~~~~VLDiG~GtG~~~~~~l~~l~~~~~~~~v~~~~vD~S~--~ml~~a~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~ 129 (292)
T 2aot_A 52 SEIKILSIGGGAGEIDLQILSKVQAQYPGVCINNEVVEPSA--EQIAKYKELVAKTSNLENVKFAWHKETSSEYQSRMLE 129 (292)
T ss_dssp SEEEEEEETCTTSHHHHHHHHHHHHHSTTCEEEEEEECSCH--HHHHHHHHHHHTCSSCTTEEEEEECSCHHHHHHHHHT
T ss_pred CCCeEEEEcCCCCHHHHHHHHHHHhhCCCceeeEEEEeCCH--HHHHHHHHHHHhccCCCcceEEEEecchhhhhhhhcc
Confidence 4668999999999765432 222 3444 9999995 7999999887643 32 33332 111111100
Q ss_pred CcCCCCCcEEEEcCCcCCCccHHHHHHHHHHHhhcCCCeEEEEE
Q 026274 134 SIFDLNPNIILGADVFYDASAFDDLFATITYLLQSSPGSVFITT 177 (241)
Q Consensus 134 ~~~~~~fDlIl~~dvly~~~~~~~ll~~~~~lL~~~~~~~~~~~ 177 (241)
+..+++||+|+++.+++|.++...+++.+.++|+ |||.+++.
T Consensus 130 ~~~~~~fD~V~~~~~l~~~~d~~~~l~~~~r~Lk--pgG~l~i~ 171 (292)
T 2aot_A 130 KKELQKWDFIHMIQMLYYVKDIPATLKFFHSLLG--TNAKMLII 171 (292)
T ss_dssp TTCCCCEEEEEEESCGGGCSCHHHHHHHHHHTEE--EEEEEEEE
T ss_pred ccCCCceeEEEEeeeeeecCCHHHHHHHHHHHcC--CCcEEEEE
Confidence 1125689999999999999999999999999999 66766654
|
| >2avn_A Ubiquinone/menaquinone biosynthesis methyltransfe related protein; ubiquinone/menaquinone biosynthesis methyltransferase-relate protein; HET: SAI; 2.35A {Thermotoga maritima} SCOP: c.66.1.41 | Back alignment and structure |
|---|
Probab=99.38 E-value=2e-12 Score=109.20 Aligned_cols=100 Identities=25% Similarity=0.262 Sum_probs=79.4
Q ss_pred CCCeEEEecCCCCHHHHHHHHhCCEEEEEcCCCcHHHHHHHHHHHHHcCCceEEEEeecCCCCcCcCCCCCcEEEEcCCc
Q 026274 70 SGANVVELGAGTSLPGLVAAKVGSNVTLTDDSNRIEVLKNMRRVCEMNKLNCRVMGLTWGFLDASIFDLNPNIILGADVF 149 (241)
Q Consensus 70 ~~~~VLElGcGtGl~sl~la~~g~~V~~tD~~~~~~~l~~~~~n~~~n~~~~~~~~l~w~~~~~~~~~~~fDlIl~~dvl 149 (241)
++.+|||+|||+|..+..+++.|.+|+++|+++ ++++.++++... .+...+..+. +..+++||+|++..++
T Consensus 54 ~~~~vLDiGcG~G~~~~~l~~~~~~v~gvD~s~--~~l~~a~~~~~~-----~~~~~d~~~~--~~~~~~fD~v~~~~~~ 124 (260)
T 2avn_A 54 NPCRVLDLGGGTGKWSLFLQERGFEVVLVDPSK--EMLEVAREKGVK-----NVVEAKAEDL--PFPSGAFEAVLALGDV 124 (260)
T ss_dssp SCCEEEEETCTTCHHHHHHHTTTCEEEEEESCH--HHHHHHHHHTCS-----CEEECCTTSC--CSCTTCEEEEEECSSH
T ss_pred CCCeEEEeCCCcCHHHHHHHHcCCeEEEEeCCH--HHHHHHHhhcCC-----CEEECcHHHC--CCCCCCEEEEEEcchh
Confidence 678999999999999999999999999999995 699988887541 1455555543 2335689999998876
Q ss_pred CC-CccHHHHHHHHHHHhhcCCCeEEEEEeec
Q 026274 150 YD-ASAFDDLFATITYLLQSSPGSVFITTYHN 180 (241)
Q Consensus 150 y~-~~~~~~ll~~~~~lL~~~~~~~~~~~~~~ 180 (241)
++ ..+...+++.+.++|+ |||.+++....
T Consensus 125 ~~~~~~~~~~l~~~~~~Lk--pgG~l~~~~~~ 154 (260)
T 2avn_A 125 LSYVENKDKAFSEIRRVLV--PDGLLIATVDN 154 (260)
T ss_dssp HHHCSCHHHHHHHHHHHEE--EEEEEEEEEEB
T ss_pred hhccccHHHHHHHHHHHcC--CCeEEEEEeCC
Confidence 55 4679999999999998 67777766544
|
| >2ipx_A RRNA 2'-O-methyltransferase fibrillarin; FBL, structural genomics, structural genomics consortium, SGC; HET: MTA; 1.82A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.38 E-value=1.7e-11 Score=101.72 Aligned_cols=127 Identities=13% Similarity=0.063 Sum_probs=88.9
Q ss_pred CCCCCeEEEecCCCCHHHHHHHHh-C--CEEEEEcCCCcHHHHHHHHHHHHHcCCceEEEEeecCCCC-cCcCCCCCcEE
Q 026274 68 RFSGANVVELGAGTSLPGLVAAKV-G--SNVTLTDDSNRIEVLKNMRRVCEMNKLNCRVMGLTWGFLD-ASIFDLNPNII 143 (241)
Q Consensus 68 ~~~~~~VLElGcGtGl~sl~la~~-g--~~V~~tD~~~~~~~l~~~~~n~~~n~~~~~~~~l~w~~~~-~~~~~~~fDlI 143 (241)
...+.+|||+|||+|..+..+++. | .+|+++|+++ .+++.+.++++.+ .++.+...|..+.. .+..+.+||+|
T Consensus 75 ~~~~~~vLDlG~G~G~~~~~la~~~g~~~~v~gvD~s~--~~i~~~~~~a~~~-~~v~~~~~d~~~~~~~~~~~~~~D~V 151 (233)
T 2ipx_A 75 IKPGAKVLYLGAASGTTVSHVSDIVGPDGLVYAVEFSH--RSGRDLINLAKKR-TNIIPVIEDARHPHKYRMLIAMVDVI 151 (233)
T ss_dssp CCTTCEEEEECCTTSHHHHHHHHHHCTTCEEEEECCCH--HHHHHHHHHHHHC-TTEEEECSCTTCGGGGGGGCCCEEEE
T ss_pred CCCCCEEEEEcccCCHHHHHHHHHhCCCcEEEEEECCH--HHHHHHHHHhhcc-CCeEEEEcccCChhhhcccCCcEEEE
Confidence 446789999999999999999986 3 5999999995 6888888887766 45666666665432 12234689999
Q ss_pred EEcCCcCCCccHHHHHHHHHHHhhcCCCeEEEEEeeccC---c---hhHH---HHHHHHcCCEEEEE
Q 026274 144 LGADVFYDASAFDDLFATITYLLQSSPGSVFITTYHNRS---G---HHLI---EFLMVKWGLKCVKL 201 (241)
Q Consensus 144 l~~dvly~~~~~~~ll~~~~~lL~~~~~~~~~~~~~~r~---~---~~~~---~~~~~~~g~~~~~i 201 (241)
++..+ .+.....++..+.++|+ |||.+++....+. . ...+ ..++++.||+....
T Consensus 152 ~~~~~--~~~~~~~~~~~~~~~Lk--pgG~l~i~~~~~~~~~~~~~~~~~~~~~~~l~~~Gf~~~~~ 214 (233)
T 2ipx_A 152 FADVA--QPDQTRIVALNAHTFLR--NGGHFVISIKANCIDSTASAEAVFASEVKKMQQENMKPQEQ 214 (233)
T ss_dssp EECCC--CTTHHHHHHHHHHHHEE--EEEEEEEEEEHHHHCSSSCHHHHHHHHHHTTGGGTEEEEEE
T ss_pred EEcCC--CccHHHHHHHHHHHHcC--CCeEEEEEEcccccccCCCHHHHHHHHHHHHHHCCCceEEE
Confidence 98544 44445667888999998 6777776655421 0 0001 23457889998875
|
| >1ne2_A Hypothetical protein TA1320; structural genomics, conserved hypothetical protein, PSI, protein structure initiative; 1.75A {Thermoplasma acidophilum} SCOP: c.66.1.32 | Back alignment and structure |
|---|
Probab=99.38 E-value=2.3e-11 Score=98.47 Aligned_cols=116 Identities=11% Similarity=0.106 Sum_probs=81.0
Q ss_pred CCCCCeEEEecCCCCHHHHHHHHhCC-EEEEEcCCCcHHHHHHHHHHHHHcCCceEEEEeecCCCCcCcCCCCCcEEEEc
Q 026274 68 RFSGANVVELGAGTSLPGLVAAKVGS-NVTLTDDSNRIEVLKNMRRVCEMNKLNCRVMGLTWGFLDASIFDLNPNIILGA 146 (241)
Q Consensus 68 ~~~~~~VLElGcGtGl~sl~la~~g~-~V~~tD~~~~~~~l~~~~~n~~~n~~~~~~~~l~w~~~~~~~~~~~fDlIl~~ 146 (241)
..++.+|||+|||+|..++.+++.|+ +|+++|+++ ++++.+++|+. ++++...|..+. +.+||+|+++
T Consensus 49 ~~~~~~vlD~gcG~G~~~~~l~~~~~~~v~~vD~~~--~~~~~a~~~~~----~~~~~~~d~~~~-----~~~~D~v~~~ 117 (200)
T 1ne2_A 49 NIGGRSVIDAGTGNGILACGSYLLGAESVTAFDIDP--DAIETAKRNCG----GVNFMVADVSEI-----SGKYDTWIMN 117 (200)
T ss_dssp SSBTSEEEEETCTTCHHHHHHHHTTBSEEEEEESCH--HHHHHHHHHCT----TSEEEECCGGGC-----CCCEEEEEEC
T ss_pred CCCCCEEEEEeCCccHHHHHHHHcCCCEEEEEECCH--HHHHHHHHhcC----CCEEEECcHHHC-----CCCeeEEEEC
Confidence 34678999999999999999999876 799999995 69999998876 567777766543 2589999999
Q ss_pred CCcCCCcc--HHHHHHHHHHHhhcCCCeEEEEEeeccCchhHHHHHHHHcCCEEEEE
Q 026274 147 DVFYDASA--FDDLFATITYLLQSSPGSVFITTYHNRSGHHLIEFLMVKWGLKCVKL 201 (241)
Q Consensus 147 dvly~~~~--~~~ll~~~~~lL~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~i 201 (241)
.++++... ...+++.+.+++ |+ +++.+.. .........+...| ++..+
T Consensus 118 ~p~~~~~~~~~~~~l~~~~~~~----g~-~~~~~~~-~~~~~~~~~~~~~g-~~~~~ 167 (200)
T 1ne2_A 118 PPFGSVVKHSDRAFIDKAFETS----MW-IYSIGNA-KARDFLRREFSARG-DVFRE 167 (200)
T ss_dssp CCC-------CHHHHHHHHHHE----EE-EEEEEEG-GGHHHHHHHHHHHE-EEEEE
T ss_pred CCchhccCchhHHHHHHHHHhc----Cc-EEEEEcC-chHHHHHHHHHHCC-CEEEE
Confidence 88877543 345666666665 33 4444333 23344455567788 77665
|
| >3lec_A NADB-rossmann superfamily protein; PSI, MCSG, structural genomics, midwest CENT structural genomics, protein structure initiative; 1.80A {Streptococcus agalactiae} | Back alignment and structure |
|---|
Probab=99.37 E-value=4.1e-12 Score=106.04 Aligned_cols=122 Identities=11% Similarity=0.003 Sum_probs=90.8
Q ss_pred CCCeEEEecCCCCHHHHHHHHhCC--EEEEEcCCCcHHHHHHHHHHHHHcCC--ceEEEEeecCCCCcCcCCCCCcEEEE
Q 026274 70 SGANVVELGAGTSLPGLVAAKVGS--NVTLTDDSNRIEVLKNMRRVCEMNKL--NCRVMGLTWGFLDASIFDLNPNIILG 145 (241)
Q Consensus 70 ~~~~VLElGcGtGl~sl~la~~g~--~V~~tD~~~~~~~l~~~~~n~~~n~~--~~~~~~l~w~~~~~~~~~~~fDlIl~ 145 (241)
++.+|||+|||+|.+++.+++.|. +|+++|+++ .+++.+++|++.|++ ++++...|+.+...+ ..+||+|+.
T Consensus 21 ~g~~VlDIGtGsG~l~i~la~~~~~~~V~AvDi~~--~al~~A~~N~~~~gl~~~I~~~~gD~l~~~~~--~~~~D~Ivi 96 (230)
T 3lec_A 21 KGARLLDVGSDHAYLPIFLLQMGYCDFAIAGEVVN--GPYQSALKNVSEHGLTSKIDVRLANGLSAFEE--ADNIDTITI 96 (230)
T ss_dssp TTEEEEEETCSTTHHHHHHHHTTCEEEEEEEESSH--HHHHHHHHHHHHTTCTTTEEEEECSGGGGCCG--GGCCCEEEE
T ss_pred CCCEEEEECCchHHHHHHHHHhCCCCEEEEEECCH--HHHHHHHHHHHHcCCCCcEEEEECchhhcccc--ccccCEEEE
Confidence 567999999999999999999874 799999995 799999999999997 477777666543221 227999875
Q ss_pred cCCcCCCccHHHHHHHHHHHhhcCCCeEEEEEeeccCchhHHHHHHHHcCCEEEEE
Q 026274 146 ADVFYDASAFDDLFATITYLLQSSPGSVFITTYHNRSGHHLIEFLMVKWGLKCVKL 201 (241)
Q Consensus 146 ~dvly~~~~~~~ll~~~~~lL~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~i 201 (241)
+..-- ..+..++......|+ +++.++++... ....+...+.+.||.+..-
T Consensus 97 aGmGg--~lI~~IL~~~~~~l~--~~~~lIlqp~~--~~~~lr~~L~~~Gf~i~~E 146 (230)
T 3lec_A 97 CGMGG--RLIADILNNDIDKLQ--HVKTLVLQPNN--REDDLRKWLAANDFEIVAE 146 (230)
T ss_dssp EEECH--HHHHHHHHHTGGGGT--TCCEEEEEESS--CHHHHHHHHHHTTEEEEEE
T ss_pred eCCch--HHHHHHHHHHHHHhC--cCCEEEEECCC--ChHHHHHHHHHCCCEEEEE
Confidence 54333 356677777777776 56666666532 3455666677889988764
|
| >1vbf_A 231AA long hypothetical protein-L-isoaspartate O- methyltransferase; trimeric coiled coil assembly; 2.80A {Sulfolobus tokodaii} SCOP: c.66.1.7 | Back alignment and structure |
|---|
Probab=99.37 E-value=4.5e-12 Score=104.73 Aligned_cols=117 Identities=9% Similarity=0.020 Sum_probs=88.1
Q ss_pred EeccHHHHHHHHHhccCCCCCCeEEEecCCCCHHHHHHHHhCCEEEEEcCCCcHHHHHHHHHHHHHcCCceEEEEeecCC
Q 026274 51 VWPCSVILAEYVWQQRYRFSGANVVELGAGTSLPGLVAAKVGSNVTLTDDSNRIEVLKNMRRVCEMNKLNCRVMGLTWGF 130 (241)
Q Consensus 51 ~W~~s~~L~~~l~~~~~~~~~~~VLElGcGtGl~sl~la~~g~~V~~tD~~~~~~~l~~~~~n~~~n~~~~~~~~l~w~~ 130 (241)
.|.....+. ++.......++.+|||+|||+|..+..+++.+.+|+++|+++ ++++.++++...++ ++.+...+..+
T Consensus 52 ~~~~~~~~~-~~~~~~~~~~~~~vLdiG~G~G~~~~~l~~~~~~v~~vD~~~--~~~~~a~~~~~~~~-~v~~~~~d~~~ 127 (231)
T 1vbf_A 52 NTTALNLGI-FMLDELDLHKGQKVLEIGTGIGYYTALIAEIVDKVVSVEINE--KMYNYASKLLSYYN-NIKLILGDGTL 127 (231)
T ss_dssp EECCHHHHH-HHHHHTTCCTTCEEEEECCTTSHHHHHHHHHSSEEEEEESCH--HHHHHHHHHHTTCS-SEEEEESCGGG
T ss_pred ccCCHHHHH-HHHHhcCCCCCCEEEEEcCCCCHHHHHHHHHcCEEEEEeCCH--HHHHHHHHHHhhcC-CeEEEECCccc
Confidence 355554444 444433455778999999999999999999999999999995 79999999988777 77777777654
Q ss_pred CCcCcCCCCCcEEEEcCCcCCCccHHHHHHHHHHHhhcCCCeEEEEEeecc
Q 026274 131 LDASIFDLNPNIILGADVFYDASAFDDLFATITYLLQSSPGSVFITTYHNR 181 (241)
Q Consensus 131 ~~~~~~~~~fDlIl~~dvly~~~~~~~ll~~~~~lL~~~~~~~~~~~~~~r 181 (241)
... .+.+||+|++..++++.. +.+.++|+ +||.+++.....
T Consensus 128 ~~~--~~~~fD~v~~~~~~~~~~------~~~~~~L~--pgG~l~~~~~~~ 168 (231)
T 1vbf_A 128 GYE--EEKPYDRVVVWATAPTLL------CKPYEQLK--EGGIMILPIGVG 168 (231)
T ss_dssp CCG--GGCCEEEEEESSBBSSCC------HHHHHTEE--EEEEEEEEECSS
T ss_pred ccc--cCCCccEEEECCcHHHHH------HHHHHHcC--CCcEEEEEEcCC
Confidence 211 245899999999998754 35788888 677777665443
|
| >1nv8_A HEMK protein; class I adoMet-dependent methyltransferase; HET: SAM MEQ; 2.20A {Thermotoga maritima} SCOP: c.66.1.30 PDB: 1nv9_A* 1vq1_A* 1sg9_A* | Back alignment and structure |
|---|
Probab=99.37 E-value=5e-12 Score=108.76 Aligned_cols=123 Identities=16% Similarity=0.128 Sum_probs=90.2
Q ss_pred ccHHHHHHHHHhccCCCCCCeEEEecCCCCHHHHHHHHh-CCEEEEEcCCCcHHHHHHHHHHHHHcCCc--eEEEEeecC
Q 026274 53 PCSVILAEYVWQQRYRFSGANVVELGAGTSLPGLVAAKV-GSNVTLTDDSNRIEVLKNMRRVCEMNKLN--CRVMGLTWG 129 (241)
Q Consensus 53 ~~s~~L~~~l~~~~~~~~~~~VLElGcGtGl~sl~la~~-g~~V~~tD~~~~~~~l~~~~~n~~~n~~~--~~~~~l~w~ 129 (241)
+.+..+.+++.......++.+|||+|||+|.+++.+++. +++|+++|+++ ++++.+++|+..+++. +++...||.
T Consensus 106 ~~te~lv~~~l~~~~~~~~~~vLDlG~GsG~~~~~la~~~~~~v~~vDis~--~al~~A~~n~~~~~l~~~v~~~~~D~~ 183 (284)
T 1nv8_A 106 PETEELVELALELIRKYGIKTVADIGTGSGAIGVSVAKFSDAIVFATDVSS--KAVEIARKNAERHGVSDRFFVRKGEFL 183 (284)
T ss_dssp TTHHHHHHHHHHHHHHHTCCEEEEESCTTSHHHHHHHHHSSCEEEEEESCH--HHHHHHHHHHHHTTCTTSEEEEESSTT
T ss_pred hhHHHHHHHHHHHhcccCCCEEEEEeCchhHHHHHHHHCCCCEEEEEECCH--HHHHHHHHHHHHcCCCCceEEEECcch
Confidence 455666666654332235679999999999999999998 77999999995 7999999999999874 788888887
Q ss_pred CCCcCcCCCCC---cEEEEcCCcC-----------CCcc--------HHHHHHHHH-HHhhcCCCeEEEEEeeccCc
Q 026274 130 FLDASIFDLNP---NIILGADVFY-----------DASA--------FDDLFATIT-YLLQSSPGSVFITTYHNRSG 183 (241)
Q Consensus 130 ~~~~~~~~~~f---DlIl~~dvly-----------~~~~--------~~~ll~~~~-~lL~~~~~~~~~~~~~~r~~ 183 (241)
+.. ..+| |+|+++.+.. |.+. -..+++.+. +.++ +||.+++.+.....
T Consensus 184 ~~~----~~~f~~~D~IvsnPPyi~~~~~l~~~v~~ep~~al~~~~dgl~~~~~i~~~~l~--pgG~l~~e~~~~q~ 254 (284)
T 1nv8_A 184 EPF----KEKFASIEMILSNPPYVKSSAHLPKDVLFEPPEALFGGEDGLDFYREFFGRYDT--SGKIVLMEIGEDQV 254 (284)
T ss_dssp GGG----GGGTTTCCEEEECCCCBCGGGSCTTSCCCSCHHHHBCTTTSCHHHHHHHHHCCC--TTCEEEEECCTTCH
T ss_pred hhc----ccccCCCCEEEEcCCCCCcccccChhhccCcHHHhcCCCcHHHHHHHHHHhcCC--CCCEEEEEECchHH
Confidence 532 1368 9999984432 1111 125778888 8887 77887777655443
|
| >4e2x_A TCAB9; kijanose, tetronitrose, tetradeoxy sugar, sugar methylation, transferase; HET: SAH TYD; 1.40A {Micromonospora chalcea} PDB: 3ndi_A* 3ndj_A* 4e32_A* 4e33_A* 4e2y_A* 4e31_A* 4e2w_A* 4e2z_A* 4e30_A* | Back alignment and structure |
|---|
Probab=99.37 E-value=1.7e-12 Score=116.93 Aligned_cols=135 Identities=15% Similarity=0.140 Sum_probs=96.2
Q ss_pred HHHHHHhccCCCCCCeEEEecCCCCHHHHHHHHhCCEEEEEcCCCcHHHHHHHHHHHHHcCCceEEEEeecCCCC---cC
Q 026274 58 LAEYVWQQRYRFSGANVVELGAGTSLPGLVAAKVGSNVTLTDDSNRIEVLKNMRRVCEMNKLNCRVMGLTWGFLD---AS 134 (241)
Q Consensus 58 L~~~l~~~~~~~~~~~VLElGcGtGl~sl~la~~g~~V~~tD~~~~~~~l~~~~~n~~~n~~~~~~~~l~w~~~~---~~ 134 (241)
+++.+.......++.+|||+|||+|..+..+++.|.+|+++|+++ ++++.++++ +.... ...+.... .+
T Consensus 95 ~~~~l~~~~~~~~~~~VLDiGcG~G~~~~~l~~~g~~v~gvD~s~--~~~~~a~~~----~~~~~--~~~~~~~~~~~l~ 166 (416)
T 4e2x_A 95 LARDFLATELTGPDPFIVEIGCNDGIMLRTIQEAGVRHLGFEPSS--GVAAKAREK----GIRVR--TDFFEKATADDVR 166 (416)
T ss_dssp HHHHHHHTTTCSSSCEEEEETCTTTTTHHHHHHTTCEEEEECCCH--HHHHHHHTT----TCCEE--CSCCSHHHHHHHH
T ss_pred HHHHHHHHhCCCCCCEEEEecCCCCHHHHHHHHcCCcEEEECCCH--HHHHHHHHc----CCCcc--eeeechhhHhhcc
Confidence 344444444445678999999999999999999999999999995 688877764 33221 11111000 01
Q ss_pred cCCCCCcEEEEcCCcCCCccHHHHHHHHHHHhhcCCCeEEEEEeec-------------------cCchhHHHHHHHHcC
Q 026274 135 IFDLNPNIILGADVFYDASAFDDLFATITYLLQSSPGSVFITTYHN-------------------RSGHHLIEFLMVKWG 195 (241)
Q Consensus 135 ~~~~~fDlIl~~dvly~~~~~~~ll~~~~~lL~~~~~~~~~~~~~~-------------------r~~~~~~~~~~~~~g 195 (241)
..+++||+|++..+++|.++...+++.+.++|+ |||.+++.... ..+...+..++++.|
T Consensus 167 ~~~~~fD~I~~~~vl~h~~d~~~~l~~~~r~Lk--pgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~s~~~l~~ll~~aG 244 (416)
T 4e2x_A 167 RTEGPANVIYAANTLCHIPYVQSVLEGVDALLA--PDGVFVFEDPYLGDIVAKTSFDQIFDEHFFLFSATSVQGMAQRCG 244 (416)
T ss_dssp HHHCCEEEEEEESCGGGCTTHHHHHHHHHHHEE--EEEEEEEEEECHHHHHHHTCGGGCSTTCCEECCHHHHHHHHHHTT
T ss_pred cCCCCEEEEEECChHHhcCCHHHHHHHHHHHcC--CCeEEEEEeCChHHhhhhcchhhhhhhhhhcCCHHHHHHHHHHcC
Confidence 124689999999999999999999999999998 66777765321 112235666788999
Q ss_pred CEEEEEe
Q 026274 196 LKCVKLV 202 (241)
Q Consensus 196 ~~~~~i~ 202 (241)
|++..+.
T Consensus 245 f~~~~~~ 251 (416)
T 4e2x_A 245 FELVDVQ 251 (416)
T ss_dssp EEEEEEE
T ss_pred CEEEEEE
Confidence 9988873
|
| >2b78_A Hypothetical protein SMU.776; structure genomics, methyltransferase, caries, structural genomics, unknown function; 2.00A {Streptococcus mutans} SCOP: b.122.1.9 c.66.1.51 PDB: 3ldf_A* | Back alignment and structure |
|---|
Probab=99.36 E-value=1.1e-11 Score=110.95 Aligned_cols=126 Identities=16% Similarity=0.038 Sum_probs=90.1
Q ss_pred CCCCeEEEecCCCCHHHHHHHHhCC-EEEEEcCCCcHHHHHHHHHHHHHcCC---ceEEEEeecCCCCcCc--CCCCCcE
Q 026274 69 FSGANVVELGAGTSLPGLVAAKVGS-NVTLTDDSNRIEVLKNMRRVCEMNKL---NCRVMGLTWGFLDASI--FDLNPNI 142 (241)
Q Consensus 69 ~~~~~VLElGcGtGl~sl~la~~g~-~V~~tD~~~~~~~l~~~~~n~~~n~~---~~~~~~l~w~~~~~~~--~~~~fDl 142 (241)
.++++|||+|||||.+++.+|+.|+ +|+++|+++ ++++.+++|++.|++ ++++...|..+..... ...+||+
T Consensus 211 ~~~~~VLDl~cGtG~~sl~la~~ga~~V~~vD~s~--~al~~A~~N~~~n~~~~~~v~~~~~D~~~~l~~~~~~~~~fD~ 288 (385)
T 2b78_A 211 AAGKTVLNLFSYTAAFSVAAAMGGAMATTSVDLAK--RSRALSLAHFEANHLDMANHQLVVMDVFDYFKYARRHHLTYDI 288 (385)
T ss_dssp TBTCEEEEETCTTTHHHHHHHHTTBSEEEEEESCT--THHHHHHHHHHHTTCCCTTEEEEESCHHHHHHHHHHTTCCEEE
T ss_pred cCCCeEEEEeeccCHHHHHHHHCCCCEEEEEECCH--HHHHHHHHHHHHcCCCccceEEEECCHHHHHHHHHHhCCCccE
Confidence 4678999999999999999999887 899999997 599999999999987 5777777665432111 1348999
Q ss_pred EEEcCCcCC-----C----ccHHHHHHHHHHHhhcCCCeEEEEEeeccCc-hhHHH----HHHHHcCCEE
Q 026274 143 ILGADVFYD-----A----SAFDDLFATITYLLQSSPGSVFITTYHNRSG-HHLIE----FLMVKWGLKC 198 (241)
Q Consensus 143 Il~~dvly~-----~----~~~~~ll~~~~~lL~~~~~~~~~~~~~~r~~-~~~~~----~~~~~~g~~~ 198 (241)
|++..+.+. . ..+..+++.+.++|+ |+|+++++...... ...+. ..+...|.+.
T Consensus 289 Ii~DPP~~~~~~~~~~~~~~~~~~ll~~~~~~L~--pgG~l~~~~~~~~~~~~~~~~~i~~~~~~~g~~~ 356 (385)
T 2b78_A 289 IIIDPPSFARNKKEVFSVSKDYHKLIRQGLEILS--ENGLIIASTNAANMTVSQFKKQIEKGFGKQKHTY 356 (385)
T ss_dssp EEECCCCC-----CCCCHHHHHHHHHHHHHHTEE--EEEEEEEEECCTTSCHHHHHHHHHHHHTTCCCEE
T ss_pred EEECCCCCCCChhhHHHHHHHHHHHHHHHHHhcC--CCcEEEEEeCCCcCCHHHHHHHHHHHHHHcCCcE
Confidence 998766652 1 234556777788888 67777766554443 22222 2345667773
|
| >2pjd_A Ribosomal RNA small subunit methyltransferase C; gene duplication, RNA modification, SAM binding; 2.10A {Escherichia coli} | Back alignment and structure |
|---|
Probab=99.36 E-value=1.5e-12 Score=114.76 Aligned_cols=103 Identities=17% Similarity=0.178 Sum_probs=82.4
Q ss_pred CCCeEEEecCCCCHHHHHHHHhC--CEEEEEcCCCcHHHHHHHHHHHHHcCCceEEEEeecCCCCcCcCCCCCcEEEEcC
Q 026274 70 SGANVVELGAGTSLPGLVAAKVG--SNVTLTDDSNRIEVLKNMRRVCEMNKLNCRVMGLTWGFLDASIFDLNPNIILGAD 147 (241)
Q Consensus 70 ~~~~VLElGcGtGl~sl~la~~g--~~V~~tD~~~~~~~l~~~~~n~~~n~~~~~~~~l~w~~~~~~~~~~~fDlIl~~d 147 (241)
.+.+|||+|||+|.+++.+++.+ .+|+++|+++ .+++.+++|+..++...++...+..+. .+.+||+|+++.
T Consensus 196 ~~~~VLDlGcG~G~~~~~la~~~~~~~v~~vD~s~--~~l~~a~~~~~~~~~~~~~~~~d~~~~----~~~~fD~Iv~~~ 269 (343)
T 2pjd_A 196 TKGKVLDVGCGAGVLSVAFARHSPKIRLTLCDVSA--PAVEASRATLAANGVEGEVFASNVFSE----VKGRFDMIISNP 269 (343)
T ss_dssp CCSBCCBTTCTTSHHHHHHHHHCTTCBCEEEESBH--HHHHHHHHHHHHTTCCCEEEECSTTTT----CCSCEEEEEECC
T ss_pred CCCeEEEecCccCHHHHHHHHHCCCCEEEEEECCH--HHHHHHHHHHHHhCCCCEEEEcccccc----ccCCeeEEEECC
Confidence 45689999999999999999987 4899999995 699999999999988877665554332 256899999999
Q ss_pred CcCC-----CccHHHHHHHHHHHhhcCCCeEEEEEeec
Q 026274 148 VFYD-----ASAFDDLFATITYLLQSSPGSVFITTYHN 180 (241)
Q Consensus 148 vly~-----~~~~~~ll~~~~~lL~~~~~~~~~~~~~~ 180 (241)
++++ ......+++.+.++|+ |||.+++....
T Consensus 270 ~~~~g~~~~~~~~~~~l~~~~~~Lk--pgG~l~i~~~~ 305 (343)
T 2pjd_A 270 PFHDGMQTSLDAAQTLIRGAVRHLN--SGGELRIVANA 305 (343)
T ss_dssp CCCSSSHHHHHHHHHHHHHHGGGEE--EEEEEEEEEET
T ss_pred CcccCccCCHHHHHHHHHHHHHhCC--CCcEEEEEEcC
Confidence 8864 3457889999999998 56666655433
|
| >3eey_A Putative rRNA methylase; rRNA methylation, S-adenosyl-methionine, structural genomics structure initiative, PSI; HET: SAM; 2.20A {Clostridium thermocellum atcc 27405} | Back alignment and structure |
|---|
Probab=99.36 E-value=5.3e-12 Score=101.83 Aligned_cols=104 Identities=14% Similarity=0.117 Sum_probs=79.5
Q ss_pred CCCCeEEEecCCCCHHHHHHHHh-C--CEEEEEcCCCcHHHHHHHHHHHHHcCC--ceEEEEeecCCCCcCcCCCCCcEE
Q 026274 69 FSGANVVELGAGTSLPGLVAAKV-G--SNVTLTDDSNRIEVLKNMRRVCEMNKL--NCRVMGLTWGFLDASIFDLNPNII 143 (241)
Q Consensus 69 ~~~~~VLElGcGtGl~sl~la~~-g--~~V~~tD~~~~~~~l~~~~~n~~~n~~--~~~~~~l~w~~~~~~~~~~~fDlI 143 (241)
.++.+|||+|||+|..++.+++. + .+|+++|+++ ++++.+++|+..++. ++++...|..+... ..+.+||+|
T Consensus 21 ~~~~~vLDlGcG~G~~~~~l~~~~~~~~~v~~vD~s~--~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~-~~~~~fD~v 97 (197)
T 3eey_A 21 KEGDTVVDATCGNGNDTAFLASLVGENGRVFGFDIQD--KAIANTTKKLTDLNLIDRVTLIKDGHQNMDK-YIDCPVKAV 97 (197)
T ss_dssp CTTCEEEESCCTTSHHHHHHHHHHCTTCEEEEECSCH--HHHHHHHHHHHHTTCGGGEEEECSCGGGGGG-TCCSCEEEE
T ss_pred CCCCEEEEcCCCCCHHHHHHHHHhCCCCEEEEEECCH--HHHHHHHHHHHHcCCCCCeEEEECCHHHHhh-hccCCceEE
Confidence 46789999999999999999986 3 4999999995 799999999999876 57777777654421 234689999
Q ss_pred EEcCCcCC---------CccHHHHHHHHHHHhhcCCCeEEEEE
Q 026274 144 LGADVFYD---------ASAFDDLFATITYLLQSSPGSVFITT 177 (241)
Q Consensus 144 l~~dvly~---------~~~~~~ll~~~~~lL~~~~~~~~~~~ 177 (241)
+++.+++. ......+++.+.++|+ +||.+++.
T Consensus 98 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~Lk--~gG~l~~~ 138 (197)
T 3eey_A 98 MFNLGYLPSGDHSISTRPETTIQALSKAMELLV--TGGIITVV 138 (197)
T ss_dssp EEEESBCTTSCTTCBCCHHHHHHHHHHHHHHEE--EEEEEEEE
T ss_pred EEcCCcccCcccccccCcccHHHHHHHHHHhCc--CCCEEEEE
Confidence 98765522 1234579999999998 56665554
|
| >3c0k_A UPF0064 protein YCCW; PUA domain, adoMet dependent methyltransferase fold; 2.00A {Escherichia coli K12} | Back alignment and structure |
|---|
Probab=99.36 E-value=9.4e-12 Score=111.75 Aligned_cols=129 Identities=18% Similarity=0.099 Sum_probs=94.2
Q ss_pred CCCCeEEEecCCCCHHHHHHHHhCC-EEEEEcCCCcHHHHHHHHHHHHHcCC---ceEEEEeecCCCCcCc--CCCCCcE
Q 026274 69 FSGANVVELGAGTSLPGLVAAKVGS-NVTLTDDSNRIEVLKNMRRVCEMNKL---NCRVMGLTWGFLDASI--FDLNPNI 142 (241)
Q Consensus 69 ~~~~~VLElGcGtGl~sl~la~~g~-~V~~tD~~~~~~~l~~~~~n~~~n~~---~~~~~~l~w~~~~~~~--~~~~fDl 142 (241)
.++++|||+|||+|.+++.+|+.|+ +|+++|+++ ++++.+++|+..|++ ++++...|..+..... ...+||+
T Consensus 219 ~~~~~VLDl~cG~G~~sl~la~~g~~~V~~vD~s~--~al~~a~~n~~~ngl~~~~v~~~~~D~~~~~~~~~~~~~~fD~ 296 (396)
T 3c0k_A 219 VENKRVLNCFSYTGGFAVSALMGGCSQVVSVDTSQ--EALDIARQNVELNKLDLSKAEFVRDDVFKLLRTYRDRGEKFDV 296 (396)
T ss_dssp CTTCEEEEESCTTCSHHHHHHHTTCSEEEEEESCH--HHHHHHHHHHHHTTCCGGGEEEEESCHHHHHHHHHHTTCCEEE
T ss_pred hCCCeEEEeeccCCHHHHHHHHCCCCEEEEEECCH--HHHHHHHHHHHHcCCCccceEEEECCHHHHHHHHHhcCCCCCE
Confidence 4678999999999999999999976 899999995 799999999999998 6788877765432211 1358999
Q ss_pred EEEcCCcCCC---------ccHHHHHHHHHHHhhcCCCeEEEEEeeccCch-h----HHHHHHHHcCCEEEEE
Q 026274 143 ILGADVFYDA---------SAFDDLFATITYLLQSSPGSVFITTYHNRSGH-H----LIEFLMVKWGLKCVKL 201 (241)
Q Consensus 143 Il~~dvly~~---------~~~~~ll~~~~~lL~~~~~~~~~~~~~~r~~~-~----~~~~~~~~~g~~~~~i 201 (241)
|++..+.+.. .....++..+.++|+ |+|+++++....... . .+...+.+.|+....+
T Consensus 297 Ii~dpP~~~~~~~~~~~~~~~~~~~l~~~~~~Lk--pgG~l~~~~~~~~~~~~~~~~~i~~~~~~~g~~~~~i 367 (396)
T 3c0k_A 297 IVMDPPKFVENKSQLMGACRGYKDINMLAIQLLN--EGGILLTFSCSGLMTSDLFQKIIADAAIDAGRDVQFI 367 (396)
T ss_dssp EEECCSSTTTCSSSSSCCCTHHHHHHHHHHHTEE--EEEEEEEEECCTTCCHHHHHHHHHHHHHHHTCCEEEE
T ss_pred EEECCCCCCCChhHHHHHHHHHHHHHHHHHHhcC--CCcEEEEEeCCCcCCHHHHHHHHHHHHHHcCCeEEEE
Confidence 9987665442 567788888999998 667766665443322 1 1222345667655544
|
| >3dr5_A Putative O-methyltransferase; Q8NRD3, CGL1119, PF01596, CGR117, NESG, structural genomics, PSI-2, protein structure initiative; 2.25A {Corynebacterium glutamicum} | Back alignment and structure |
|---|
Probab=99.35 E-value=3.8e-12 Score=105.58 Aligned_cols=118 Identities=11% Similarity=0.089 Sum_probs=85.5
Q ss_pred ccHHHHHHHHHhccCCCCCCeEEEecCCCCHHHHHHHHh---CCEEEEEcCCCcHHHHHHHHHHHHHcCCc---eEEEEe
Q 026274 53 PCSVILAEYVWQQRYRFSGANVVELGAGTSLPGLVAAKV---GSNVTLTDDSNRIEVLKNMRRVCEMNKLN---CRVMGL 126 (241)
Q Consensus 53 ~~s~~L~~~l~~~~~~~~~~~VLElGcGtGl~sl~la~~---g~~V~~tD~~~~~~~l~~~~~n~~~n~~~---~~~~~l 126 (241)
+..-.+..++.......++.+|||||||+|..++.+++. +++|+++|+++ ++++.+++|++.++.. +++...
T Consensus 39 ~~~~~~l~~l~~~~~~~~~~~vLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~--~~~~~a~~~~~~~g~~~~~i~~~~g 116 (221)
T 3dr5_A 39 EMTGQLLTTLAATTNGNGSTGAIAITPAAGLVGLYILNGLADNTTLTCIDPES--EHQRQAKALFREAGYSPSRVRFLLS 116 (221)
T ss_dssp HHHHHHHHHHHHHSCCTTCCEEEEESTTHHHHHHHHHHHSCTTSEEEEECSCH--HHHHHHHHHHHHTTCCGGGEEEECS
T ss_pred HHHHHHHHHHHHhhCCCCCCCEEEEcCCchHHHHHHHHhCCCCCEEEEEECCH--HHHHHHHHHHHHcCCCcCcEEEEEc
Confidence 444444455544333223459999999999999999985 56999999995 7999999999988764 666665
Q ss_pred ecCCCCcCcCCCCCcEEEEcCCcCCCccHHHHHHHHHHHhhcCCCeEEEEE
Q 026274 127 TWGFLDASIFDLNPNIILGADVFYDASAFDDLFATITYLLQSSPGSVFITT 177 (241)
Q Consensus 127 ~w~~~~~~~~~~~fDlIl~~dvly~~~~~~~ll~~~~~lL~~~~~~~~~~~ 177 (241)
+..+......+++||+|++.. .......+++.+.++|+ |||++++.
T Consensus 117 da~~~l~~~~~~~fD~V~~d~---~~~~~~~~l~~~~~~Lk--pGG~lv~d 162 (221)
T 3dr5_A 117 RPLDVMSRLANDSYQLVFGQV---SPMDLKALVDAAWPLLR--RGGALVLA 162 (221)
T ss_dssp CHHHHGGGSCTTCEEEEEECC---CTTTHHHHHHHHHHHEE--EEEEEEET
T ss_pred CHHHHHHHhcCCCcCeEEEcC---cHHHHHHHHHHHHHHcC--CCcEEEEe
Confidence 544332222256899999753 24567789999999998 67877764
|
| >3gdh_A Trimethylguanosine synthase homolog; M7G, CAP, dimethyltransferase, usnRNA, snoRNA, telomerase, cytoplasm, methyltransferase, nucleus; HET: MGP SAH; 2.00A {Homo sapiens} PDB: 3egi_A* | Back alignment and structure |
|---|
Probab=99.35 E-value=3.3e-13 Score=112.45 Aligned_cols=93 Identities=13% Similarity=0.037 Sum_probs=78.2
Q ss_pred CCCeEEEecCCCCHHHHHHHHhCCEEEEEcCCCcHHHHHHHHHHHHHcCC--ceEEEEeecCCCCcCcCCCCCcEEEEcC
Q 026274 70 SGANVVELGAGTSLPGLVAAKVGSNVTLTDDSNRIEVLKNMRRVCEMNKL--NCRVMGLTWGFLDASIFDLNPNIILGAD 147 (241)
Q Consensus 70 ~~~~VLElGcGtGl~sl~la~~g~~V~~tD~~~~~~~l~~~~~n~~~n~~--~~~~~~l~w~~~~~~~~~~~fDlIl~~d 147 (241)
++.+|||+|||+|..++.+++.|.+|+++|+++ .+++.+++|+..+++ ++.+...|+.+.. .+.+||+|+++.
T Consensus 78 ~~~~vLD~gcG~G~~~~~la~~~~~v~~vD~s~--~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~---~~~~~D~v~~~~ 152 (241)
T 3gdh_A 78 KCDVVVDAFCGVGGNTIQFALTGMRVIAIDIDP--VKIALARNNAEVYGIADKIEFICGDFLLLA---SFLKADVVFLSP 152 (241)
T ss_dssp CCSEEEETTCTTSHHHHHHHHTTCEEEEEESCH--HHHHHHHHHHHHTTCGGGEEEEESCHHHHG---GGCCCSEEEECC
T ss_pred CCCEEEECccccCHHHHHHHHcCCEEEEEECCH--HHHHHHHHHHHHcCCCcCeEEEECChHHhc---ccCCCCEEEECC
Confidence 678999999999999999999999999999995 799999999999987 6888887776543 345899999998
Q ss_pred CcCCCccHHHHHHHHHHHhh
Q 026274 148 VFYDASAFDDLFATITYLLQ 167 (241)
Q Consensus 148 vly~~~~~~~ll~~~~~lL~ 167 (241)
++++.......+..+.++|+
T Consensus 153 ~~~~~~~~~~~~~~~~~~L~ 172 (241)
T 3gdh_A 153 PWGGPDYATAETFDIRTMMS 172 (241)
T ss_dssp CCSSGGGGGSSSBCTTTSCS
T ss_pred CcCCcchhhhHHHHHHhhcC
Confidence 88887666555666677776
|
| >3htx_A HEN1; HEN1, small RNA methyltransferase, protein-RNA complex; HET: SAH; 3.10A {Arabidopsis thaliana} | Back alignment and structure |
|---|
Probab=99.35 E-value=3.8e-11 Score=115.44 Aligned_cols=114 Identities=13% Similarity=0.080 Sum_probs=85.8
Q ss_pred HHHHHHHhccCCCCCCeEEEecCCCCHHHHHHHHhC---CEEEEEcCCCcHHHHHHHHHHHHHc------C-CceEEEEe
Q 026274 57 ILAEYVWQQRYRFSGANVVELGAGTSLPGLVAAKVG---SNVTLTDDSNRIEVLKNMRRVCEMN------K-LNCRVMGL 126 (241)
Q Consensus 57 ~L~~~l~~~~~~~~~~~VLElGcGtGl~sl~la~~g---~~V~~tD~~~~~~~l~~~~~n~~~n------~-~~~~~~~l 126 (241)
...+++.......++.+|||||||+|.+++.+++.+ .+|+++|+++ .|++.+++++... + .++++...
T Consensus 708 qRle~LLelL~~~~g~rVLDVGCGTG~lai~LAr~g~p~a~VtGVDIS~--emLe~AReRLa~~lnAkr~gl~nVefiqG 785 (950)
T 3htx_A 708 QRVEYALKHIRESSASTLVDFGCGSGSLLDSLLDYPTSLQTIIGVDISP--KGLARAAKMLHVKLNKEACNVKSATLYDG 785 (950)
T ss_dssp HHHHHHHHHHHHSCCSEEEEETCSSSHHHHHHTSSCCCCCEEEEEESCH--HHHHHHHHHHHHHTTTTCSSCSEEEEEES
T ss_pred HHHHHHHHHhcccCCCEEEEECCCCCHHHHHHHHhCCCCCeEEEEECCH--HHHHHHHHHhhhccchhhcCCCceEEEEC
Confidence 334444443333477899999999999999999987 6999999995 6999998866532 2 25777777
Q ss_pred ecCCCCcCcCCCCCcEEEEcCCcCCCccHH--HHHHHHHHHhhcCCCeEEEEE
Q 026274 127 TWGFLDASIFDLNPNIILGADVFYDASAFD--DLFATITYLLQSSPGSVFITT 177 (241)
Q Consensus 127 ~w~~~~~~~~~~~fDlIl~~dvly~~~~~~--~ll~~~~~lL~~~~~~~~~~~ 177 (241)
|..+.. ..+.+||+|++.++++|.++.. .+++.+.++|+ || .++++
T Consensus 786 Da~dLp--~~d~sFDlVV~~eVLeHL~dp~l~~~L~eI~RvLK--PG-~LIIS 833 (950)
T 3htx_A 786 SILEFD--SRLHDVDIGTCLEVIEHMEEDQACEFGEKVLSLFH--PK-LLIVS 833 (950)
T ss_dssp CTTSCC--TTSCSCCEEEEESCGGGSCHHHHHHHHHHHHHTTC--CS-EEEEE
T ss_pred chHhCC--cccCCeeEEEEeCchhhCChHHHHHHHHHHHHHcC--CC-EEEEE
Confidence 766542 2346899999999999987654 58999999998 45 44444
|
| >3duw_A OMT, O-methyltransferase, putative; alternating of alpha and beta with complex SAH; HET: SAH; 1.20A {Bacillus cereus} PDB: 3dul_A* | Back alignment and structure |
|---|
Probab=99.35 E-value=3.2e-12 Score=105.18 Aligned_cols=102 Identities=19% Similarity=0.069 Sum_probs=79.4
Q ss_pred CCCCeEEEecCCCCHHHHHHHHh---CCEEEEEcCCCcHHHHHHHHHHHHHcCC--ceEEEEeecCCCCcCcC---CCCC
Q 026274 69 FSGANVVELGAGTSLPGLVAAKV---GSNVTLTDDSNRIEVLKNMRRVCEMNKL--NCRVMGLTWGFLDASIF---DLNP 140 (241)
Q Consensus 69 ~~~~~VLElGcGtGl~sl~la~~---g~~V~~tD~~~~~~~l~~~~~n~~~n~~--~~~~~~l~w~~~~~~~~---~~~f 140 (241)
.++++|||||||+|..++.+++. +++|+++|+++ ++++.+++|+...+. ++++...+..+...... ..+|
T Consensus 57 ~~~~~vLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~--~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~f 134 (223)
T 3duw_A 57 QGARNILEIGTLGGYSTIWLARGLSSGGRVVTLEASE--KHADIARSNIERANLNDRVEVRTGLALDSLQQIENEKYEPF 134 (223)
T ss_dssp HTCSEEEEECCTTSHHHHHHHTTCCSSCEEEEEESCH--HHHHHHHHHHHHTTCTTTEEEEESCHHHHHHHHHHTTCCCC
T ss_pred hCCCEEEEecCCccHHHHHHHHhCCCCCEEEEEECCH--HHHHHHHHHHHHcCCCCcEEEEEcCHHHHHHHHHhcCCCCc
Confidence 46789999999999999999997 67999999995 799999999998876 47777766543211111 1479
Q ss_pred cEEEEcCCcCCCccHHHHHHHHHHHhhcCCCeEEEEE
Q 026274 141 NIILGADVFYDASAFDDLFATITYLLQSSPGSVFITT 177 (241)
Q Consensus 141 DlIl~~dvly~~~~~~~ll~~~~~lL~~~~~~~~~~~ 177 (241)
|+|++... ......+++.+.++|+ |||++++.
T Consensus 135 D~v~~d~~---~~~~~~~l~~~~~~L~--pgG~lv~~ 166 (223)
T 3duw_A 135 DFIFIDAD---KQNNPAYFEWALKLSR--PGTVIIGD 166 (223)
T ss_dssp SEEEECSC---GGGHHHHHHHHHHTCC--TTCEEEEE
T ss_pred CEEEEcCC---cHHHHHHHHHHHHhcC--CCcEEEEe
Confidence 99997543 4567889999999998 66777765
|
| >4dmg_A Putative uncharacterized protein TTHA1493; rRNA, methyltransferase, S-adenosyl-methionine, 23S ribosoma transferase; HET: SAM; 1.70A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=99.35 E-value=3.6e-12 Score=114.55 Aligned_cols=127 Identities=13% Similarity=-0.033 Sum_probs=90.1
Q ss_pred CCCeEEEecCCCCHHHHHHHHhCCEEEEEcCCCcHHHHHHHHHHHHHcCCceEEEEeecCCCCcCcCCCCCcEEEEcCCc
Q 026274 70 SGANVVELGAGTSLPGLVAAKVGSNVTLTDDSNRIEVLKNMRRVCEMNKLNCRVMGLTWGFLDASIFDLNPNIILGADVF 149 (241)
Q Consensus 70 ~~~~VLElGcGtGl~sl~la~~g~~V~~tD~~~~~~~l~~~~~n~~~n~~~~~~~~l~w~~~~~~~~~~~fDlIl~~dvl 149 (241)
+|++|||+|||||..++.+|+.|++|+++|+|+ .+++.+++|++.|++..++...|..+..... ...||+|++..+.
T Consensus 214 ~g~~VLDlg~GtG~~sl~~a~~ga~V~avDis~--~al~~a~~n~~~ng~~~~~~~~D~~~~l~~~-~~~fD~Ii~dpP~ 290 (393)
T 4dmg_A 214 PGERVLDVYSYVGGFALRAARKGAYALAVDKDL--EALGVLDQAALRLGLRVDIRHGEALPTLRGL-EGPFHHVLLDPPT 290 (393)
T ss_dssp TTCEEEEESCTTTHHHHHHHHTTCEEEEEESCH--HHHHHHHHHHHHHTCCCEEEESCHHHHHHTC-CCCEEEEEECCCC
T ss_pred CCCeEEEcccchhHHHHHHHHcCCeEEEEECCH--HHHHHHHHHHHHhCCCCcEEEccHHHHHHHh-cCCCCEEEECCCc
Confidence 488999999999999999999999999999995 7999999999999987666655544322222 3349999987665
Q ss_pred CCC---------ccHHHHHHHHHHHhhcCCCeEEE-EEeeccCchhH----HHHHHHHcCCEEEEE
Q 026274 150 YDA---------SAFDDLFATITYLLQSSPGSVFI-TTYHNRSGHHL----IEFLMVKWGLKCVKL 201 (241)
Q Consensus 150 y~~---------~~~~~ll~~~~~lL~~~~~~~~~-~~~~~r~~~~~----~~~~~~~~g~~~~~i 201 (241)
|.. .....+++.+.++|+ |||.++ +++........ +...+.+.|.....+
T Consensus 291 f~~~~~~~~~~~~~~~~ll~~a~~~Lk--pGG~Lv~~s~s~~~~~~~f~~~v~~a~~~~g~~~~i~ 354 (393)
T 4dmg_A 291 LVKRPEELPAMKRHLVDLVREALRLLA--EEGFLWLSSCSYHLRLEDLLEVARRAAADLGRRLRVH 354 (393)
T ss_dssp CCSSGGGHHHHHHHHHHHHHHHHHTEE--EEEEEEEEECCTTSCHHHHHHHHHHHHHHHTCCEEEE
T ss_pred CCCCHHHHHHHHHHHHHHHHHHHHhcC--CCCEEEEEECCCCCCHHHHHHHHHHHHHHhCCeEEEE
Confidence 542 345678888889998 566555 44433322222 222345566665554
|
| >3gnl_A Uncharacterized protein, DUF633, LMOF2365_1472; structural genomics, PSI-2, protein structure initiative; 1.50A {Listeria monocytogenes str} | Back alignment and structure |
|---|
Probab=99.35 E-value=6.1e-12 Score=105.87 Aligned_cols=121 Identities=7% Similarity=-0.062 Sum_probs=89.0
Q ss_pred CCCeEEEecCCCCHHHHHHHHhCC--EEEEEcCCCcHHHHHHHHHHHHHcCCc--eEEEEeecCCCCcCcCCCCCcEEEE
Q 026274 70 SGANVVELGAGTSLPGLVAAKVGS--NVTLTDDSNRIEVLKNMRRVCEMNKLN--CRVMGLTWGFLDASIFDLNPNIILG 145 (241)
Q Consensus 70 ~~~~VLElGcGtGl~sl~la~~g~--~V~~tD~~~~~~~l~~~~~n~~~n~~~--~~~~~l~w~~~~~~~~~~~fDlIl~ 145 (241)
++.+|||+|||+|.+++.+++.+. +|+++|+++ .+++.+++|++.|++. +.+...|+.+...+ ..+||+|+.
T Consensus 21 ~g~~VlDIGtGsG~l~i~la~~~~~~~V~avDi~~--~al~~A~~N~~~~gl~~~I~v~~gD~l~~~~~--~~~~D~Ivi 96 (244)
T 3gnl_A 21 KNERIADIGSDHAYLPCFAVKNQTASFAIAGEVVD--GPFQSAQKQVRSSGLTEQIDVRKGNGLAVIEK--KDAIDTIVI 96 (244)
T ss_dssp SSEEEEEETCSTTHHHHHHHHTTSEEEEEEEESSH--HHHHHHHHHHHHTTCTTTEEEEECSGGGGCCG--GGCCCEEEE
T ss_pred CCCEEEEECCccHHHHHHHHHhCCCCEEEEEECCH--HHHHHHHHHHHHcCCCceEEEEecchhhccCc--cccccEEEE
Confidence 567999999999999999999874 799999995 7999999999999974 67776665543221 126999876
Q ss_pred cCCcCCCccHHHHHHHHHHHhhcCCCeEEEEEeeccCchhHHHHHHHHcCCEEEE
Q 026274 146 ADVFYDASAFDDLFATITYLLQSSPGSVFITTYHNRSGHHLIEFLMVKWGLKCVK 200 (241)
Q Consensus 146 ~dvly~~~~~~~ll~~~~~lL~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~ 200 (241)
+..-- ..+..++......|+ +++.+++.... ....+...+.+.||.+..
T Consensus 97 agmGg--~lI~~IL~~~~~~L~--~~~~lIlq~~~--~~~~lr~~L~~~Gf~i~~ 145 (244)
T 3gnl_A 97 AGMGG--TLIRTILEEGAAKLA--GVTKLILQPNI--AAWQLREWSEQNNWLITS 145 (244)
T ss_dssp EEECH--HHHHHHHHHTGGGGT--TCCEEEEEESS--CHHHHHHHHHHHTEEEEE
T ss_pred eCCch--HHHHHHHHHHHHHhC--CCCEEEEEcCC--ChHHHHHHHHHCCCEEEE
Confidence 43222 346677777777776 56666666432 345566667788999854
|
| >2y1w_A Histone-arginine methyltransferase CARM1; histone modification; HET: SFG 849; 2.10A {Homo sapiens} PDB: 2y1x_A* 3b3f_A* 3b3g_A 2v74_B* 2v7e_A | Back alignment and structure |
|---|
Probab=99.34 E-value=7.6e-12 Score=110.52 Aligned_cols=109 Identities=16% Similarity=0.249 Sum_probs=85.0
Q ss_pred HHHHhccCCCCCCeEEEecCCCCHHHHHHHHhCC-EEEEEcCCCcHHHHHHHHHHHHHcCC--ceEEEEeecCCCCcCcC
Q 026274 60 EYVWQQRYRFSGANVVELGAGTSLPGLVAAKVGS-NVTLTDDSNRIEVLKNMRRVCEMNKL--NCRVMGLTWGFLDASIF 136 (241)
Q Consensus 60 ~~l~~~~~~~~~~~VLElGcGtGl~sl~la~~g~-~V~~tD~~~~~~~l~~~~~n~~~n~~--~~~~~~l~w~~~~~~~~ 136 (241)
+.+.......++++|||+|||+|.+++.+++.|+ +|+++|+++ +++.++++++.++. ++++...++.+.. .
T Consensus 40 ~~i~~~l~~~~~~~VLDiGcGtG~ls~~la~~g~~~V~~vD~s~---~~~~a~~~~~~~~l~~~v~~~~~d~~~~~---~ 113 (348)
T 2y1w_A 40 RAILQNHTDFKDKIVLDVGCGSGILSFFAAQAGARKIYAVEAST---MAQHAEVLVKSNNLTDRIVVIPGKVEEVS---L 113 (348)
T ss_dssp HHHHHTGGGTTTCEEEEETCTTSHHHHHHHHTTCSEEEEEECST---HHHHHHHHHHHTTCTTTEEEEESCTTTCC---C
T ss_pred HHHHhccccCCcCEEEEcCCCccHHHHHHHhCCCCEEEEECCHH---HHHHHHHHHHHcCCCCcEEEEEcchhhCC---C
Confidence 4444444556789999999999999999999987 999999995 78899999998886 5777777766542 2
Q ss_pred CCCCcEEEEcCCcCCC--ccHHHHHHHHHHHhhcCCCeEEEE
Q 026274 137 DLNPNIILGADVFYDA--SAFDDLFATITYLLQSSPGSVFIT 176 (241)
Q Consensus 137 ~~~fDlIl~~dvly~~--~~~~~ll~~~~~lL~~~~~~~~~~ 176 (241)
+++||+|++..+.++. +.....+..+.++|+ |||.+++
T Consensus 114 ~~~~D~Ivs~~~~~~~~~~~~~~~l~~~~~~Lk--pgG~li~ 153 (348)
T 2y1w_A 114 PEQVDIIISEPMGYMLFNERMLESYLHAKKYLK--PSGNMFP 153 (348)
T ss_dssp SSCEEEEEECCCBTTBTTTSHHHHHHHGGGGEE--EEEEEES
T ss_pred CCceeEEEEeCchhcCChHHHHHHHHHHHhhcC--CCeEEEE
Confidence 3589999999888764 445667777889998 6676663
|
| >1ej0_A FTSJ; methyltransferase, adoMet, adenosyl methionine, heat shock proteins, 23S ribosomal RNA; HET: SAM; 1.50A {Escherichia coli} SCOP: c.66.1.2 PDB: 1eiz_A* | Back alignment and structure |
|---|
Probab=99.33 E-value=3.8e-11 Score=93.91 Aligned_cols=134 Identities=13% Similarity=0.062 Sum_probs=90.2
Q ss_pred ccHHHHHHHHHhccCCCCCCeEEEecCCCCHHHHHHHHh-C--CEEEEEcCCCcHHHHHHHHHHHHHcCCceEEEEeecC
Q 026274 53 PCSVILAEYVWQQRYRFSGANVVELGAGTSLPGLVAAKV-G--SNVTLTDDSNRIEVLKNMRRVCEMNKLNCRVMGLTWG 129 (241)
Q Consensus 53 ~~s~~L~~~l~~~~~~~~~~~VLElGcGtGl~sl~la~~-g--~~V~~tD~~~~~~~l~~~~~n~~~n~~~~~~~~l~w~ 129 (241)
.+...+.+++.......++.+|||+|||+|..+..+++. | .+|+++|+++ +++. .++.+...++.
T Consensus 5 r~~~~l~~~~~~~~~~~~~~~vLd~G~G~G~~~~~l~~~~~~~~~v~~~D~~~---~~~~---------~~~~~~~~d~~ 72 (180)
T 1ej0_A 5 RAWFKLDEIQQSDKLFKPGMTVVDLGAAPGGWSQYVVTQIGGKGRIIACDLLP---MDPI---------VGVDFLQGDFR 72 (180)
T ss_dssp HHHHHHHHHHHHHCCCCTTCEEEEESCTTCHHHHHHHHHHCTTCEEEEEESSC---CCCC---------TTEEEEESCTT
T ss_pred hHHHHHHHHHHHhCCCCCCCeEEEeCCCCCHHHHHHHHHhCCCCeEEEEECcc---cccc---------CcEEEEEcccc
Confidence 445566666665554557789999999999999999987 3 6999999995 3321 34566666665
Q ss_pred CCCc-----C-cCCCCCcEEEEcCCcCCCccH-----------HHHHHHHHHHhhcCCCeEEEEEeeccCchhHHHHHHH
Q 026274 130 FLDA-----S-IFDLNPNIILGADVFYDASAF-----------DDLFATITYLLQSSPGSVFITTYHNRSGHHLIEFLMV 192 (241)
Q Consensus 130 ~~~~-----~-~~~~~fDlIl~~dvly~~~~~-----------~~ll~~~~~lL~~~~~~~~~~~~~~r~~~~~~~~~~~ 192 (241)
+... . ..+.+||+|+++.++++.... ..+++.+.++|+ +||.+++..............++
T Consensus 73 ~~~~~~~~~~~~~~~~~D~i~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~L~--~gG~l~~~~~~~~~~~~~~~~~~ 150 (180)
T 1ej0_A 73 DELVMKALLERVGDSKVQVVMSDMAPNMSGTPAVDIPRAMYLVELALEMCRDVLA--PGGSFVVKVFQGEGFDEYLREIR 150 (180)
T ss_dssp SHHHHHHHHHHHTTCCEEEEEECCCCCCCSCHHHHHHHHHHHHHHHHHHHHHHEE--EEEEEEEEEESSTTHHHHHHHHH
T ss_pred cchhhhhhhccCCCCceeEEEECCCccccCCCccchHHHHHHHHHHHHHHHHHcC--CCcEEEEEEecCCcHHHHHHHHH
Confidence 4310 0 234689999999888776655 789999999998 66766665444433333333334
Q ss_pred HcCCEEEEE
Q 026274 193 KWGLKCVKL 201 (241)
Q Consensus 193 ~~g~~~~~i 201 (241)
++ |....+
T Consensus 151 ~~-~~~~~~ 158 (180)
T 1ej0_A 151 SL-FTKVKV 158 (180)
T ss_dssp HH-EEEEEE
T ss_pred Hh-hhhEEe
Confidence 43 555554
|
| >2r3s_A Uncharacterized protein; methyltransferase domain, structural genomics, joint center structural genomics, JCSG, protein structure initiative; HET: MSE; 2.15A {Nostoc punctiforme} | Back alignment and structure |
|---|
Probab=99.33 E-value=2.6e-11 Score=105.64 Aligned_cols=126 Identities=13% Similarity=0.145 Sum_probs=94.5
Q ss_pred CCCCeEEEecCCCCHHHHHHHHh--CCEEEEEcCCCcHHHHHHHHHHHHHcCC--ceEEEEeecCCCCcCcCCCCCcEEE
Q 026274 69 FSGANVVELGAGTSLPGLVAAKV--GSNVTLTDDSNRIEVLKNMRRVCEMNKL--NCRVMGLTWGFLDASIFDLNPNIIL 144 (241)
Q Consensus 69 ~~~~~VLElGcGtGl~sl~la~~--g~~V~~tD~~~~~~~l~~~~~n~~~n~~--~~~~~~l~w~~~~~~~~~~~fDlIl 144 (241)
.++.+|||+|||+|..+..+++. +.+++++|++ . +++.+++++..++. ++++...|+.+. + ....||+|+
T Consensus 164 ~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~~-~--~~~~a~~~~~~~~~~~~v~~~~~d~~~~--~-~~~~~D~v~ 237 (335)
T 2r3s_A 164 IEPLKVLDISASHGLFGIAVAQHNPNAEIFGVDWA-S--VLEVAKENARIQGVASRYHTIAGSAFEV--D-YGNDYDLVL 237 (335)
T ss_dssp CCCSEEEEETCTTCHHHHHHHHHCTTCEEEEEECH-H--HHHHHHHHHHHHTCGGGEEEEESCTTTS--C-CCSCEEEEE
T ss_pred CCCCEEEEECCCcCHHHHHHHHHCCCCeEEEEecH-H--HHHHHHHHHHhcCCCcceEEEecccccC--C-CCCCCcEEE
Confidence 45679999999999999999987 5699999998 4 99999999988776 477777776553 2 233599999
Q ss_pred EcCCcCCC--ccHHHHHHHHHHHhhcCCCeEEEEE-eecc-------------------------CchhHHHHHHHHcCC
Q 026274 145 GADVFYDA--SAFDDLFATITYLLQSSPGSVFITT-YHNR-------------------------SGHHLIEFLMVKWGL 196 (241)
Q Consensus 145 ~~dvly~~--~~~~~ll~~~~~lL~~~~~~~~~~~-~~~r-------------------------~~~~~~~~~~~~~g~ 196 (241)
++.++++. +....+++.+.++|+ |||.+++. .... .+......++++.||
T Consensus 238 ~~~~l~~~~~~~~~~~l~~~~~~L~--pgG~l~i~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~~ll~~aGf 315 (335)
T 2r3s_A 238 LPNFLHHFDVATCEQLLRKIKTALA--VEGKVIVFDFIPNSDRITPPDAAAFSLVMLATTPNGDAYTFAEYESMFSNAGF 315 (335)
T ss_dssp EESCGGGSCHHHHHHHHHHHHHHEE--EEEEEEEEECCCCTTSSCSHHHHHHHHHHHHHSSSCCCCCHHHHHHHHHHTTC
T ss_pred EcchhccCCHHHHHHHHHHHHHhCC--CCcEEEEEeecCCCCcCCchHHHHHHHHHHeeCCCCCcCCHHHHHHHHHHCCC
Confidence 99999987 455799999999998 55644443 2111 112334455678899
Q ss_pred EEEEEe
Q 026274 197 KCVKLV 202 (241)
Q Consensus 197 ~~~~i~ 202 (241)
+...+.
T Consensus 316 ~~~~~~ 321 (335)
T 2r3s_A 316 SHSQLH 321 (335)
T ss_dssp SEEEEE
T ss_pred CeeeEE
Confidence 888774
|
| >2yvl_A TRMI protein, hypothetical protein; tRNA, methyltransferase, S-adenosylmethionine, structural GE NPPSFA; HET: SAM; 2.20A {Aquifex aeolicus} | Back alignment and structure |
|---|
Probab=99.33 E-value=1.9e-11 Score=101.84 Aligned_cols=123 Identities=11% Similarity=0.041 Sum_probs=87.3
Q ss_pred CCCCCCeEEEecCCCCHHHHHHHHhCCEEEEEcCCCcHHHHHHHHHHHHHcCC--ceEEEEeecCCCCcCcCCCCCcEEE
Q 026274 67 YRFSGANVVELGAGTSLPGLVAAKVGSNVTLTDDSNRIEVLKNMRRVCEMNKL--NCRVMGLTWGFLDASIFDLNPNIIL 144 (241)
Q Consensus 67 ~~~~~~~VLElGcGtGl~sl~la~~g~~V~~tD~~~~~~~l~~~~~n~~~n~~--~~~~~~l~w~~~~~~~~~~~fDlIl 144 (241)
....+.+|||+|||+|.+++.+++.+.+|+++|+++ ++++.+++|...+++ ++++...++.+.. ..+.+||+|+
T Consensus 88 ~~~~~~~vldiG~G~G~~~~~l~~~~~~v~~vD~~~--~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~--~~~~~~D~v~ 163 (248)
T 2yvl_A 88 NLNKEKRVLEFGTGSGALLAVLSEVAGEVWTFEAVE--EFYKTAQKNLKKFNLGKNVKFFNVDFKDAE--VPEGIFHAAF 163 (248)
T ss_dssp TCCTTCEEEEECCTTSHHHHHHHHHSSEEEEECSCH--HHHHHHHHHHHHTTCCTTEEEECSCTTTSC--CCTTCBSEEE
T ss_pred CCCCCCEEEEeCCCccHHHHHHHHhCCEEEEEecCH--HHHHHHHHHHHHcCCCCcEEEEEcChhhcc--cCCCcccEEE
Confidence 345678999999999999999999888999999995 799999999988775 5666665655432 1245799999
Q ss_pred EcCCcCCCccHHHHHHHHHHHhhcCCCeEEEEEeeccCchhHHHHHHHHcCCEEEEE
Q 026274 145 GADVFYDASAFDDLFATITYLLQSSPGSVFITTYHNRSGHHLIEFLMVKWGLKCVKL 201 (241)
Q Consensus 145 ~~dvly~~~~~~~ll~~~~~lL~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~i 201 (241)
++ .++...+++.+.++|+ ++|.+++..............+++. |.....
T Consensus 164 ~~-----~~~~~~~l~~~~~~L~--~gG~l~~~~~~~~~~~~~~~~l~~~-f~~~~~ 212 (248)
T 2yvl_A 164 VD-----VREPWHYLEKVHKSLM--EGAPVGFLLPTANQVIKLLESIENY-FGNLEV 212 (248)
T ss_dssp EC-----SSCGGGGHHHHHHHBC--TTCEEEEEESSHHHHHHHHHHSTTT-EEEEEE
T ss_pred EC-----CcCHHHHHHHHHHHcC--CCCEEEEEeCCHHHHHHHHHHHHhh-CCcceE
Confidence 73 4466788899999998 5666666554332222222333444 665544
|
| >1o9g_A RRNA methyltransferase; antibiotic resistance, Se-MAD; 1.5A {Streptomyces viridochromogenes} SCOP: c.66.1.29 PDB: 1o9h_A | Back alignment and structure |
|---|
Probab=99.32 E-value=5.2e-12 Score=106.09 Aligned_cols=104 Identities=13% Similarity=0.076 Sum_probs=77.0
Q ss_pred CCCeEEEecCCCCHHHHHHHHh----CCEEEEEcCCCcHHHHHHHHHHHHHc---CC--c--------------------
Q 026274 70 SGANVVELGAGTSLPGLVAAKV----GSNVTLTDDSNRIEVLKNMRRVCEMN---KL--N-------------------- 120 (241)
Q Consensus 70 ~~~~VLElGcGtGl~sl~la~~----g~~V~~tD~~~~~~~l~~~~~n~~~n---~~--~-------------------- 120 (241)
++.+|||+|||+|.+++.+++. +.+|+++|+++ .+++.+++|+..+ ++ .
T Consensus 51 ~~~~vLD~gcGsG~~~~~la~~~~~~~~~v~gvDis~--~~l~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 128 (250)
T 1o9g_A 51 GPVTLWDPCCGSGYLLTVLGLLHRRSLRQVIASDVDP--APLELAAKNLALLSPAGLTARELERREQSERFGKPSYLEAA 128 (250)
T ss_dssp SCEEEEETTCTTSHHHHHHHHHTGGGEEEEEEEESCH--HHHHHHHHHHHTTSHHHHHHHHHHHHHHHHHHCCHHHHHHH
T ss_pred CCCeEEECCCCCCHHHHHHHHHhccCCCeEEEEECCH--HHHHHHHHHHHHhhhccccccchhhhhhhhhcccccchhhh
Confidence 5679999999999999999987 45899999995 7999999988766 33 1
Q ss_pred -----eE-------------EEEeecCCCCcC--c-CCCCCcEEEEcCCcCCCc---------cHHHHHHHHHHHhhcCC
Q 026274 121 -----CR-------------VMGLTWGFLDAS--I-FDLNPNIILGADVFYDAS---------AFDDLFATITYLLQSSP 170 (241)
Q Consensus 121 -----~~-------------~~~l~w~~~~~~--~-~~~~fDlIl~~dvly~~~---------~~~~ll~~~~~lL~~~~ 170 (241)
++ +...|+.+.... . ...+||+|+++.++.+.. ....+++.+.++|+ +
T Consensus 129 ~~~~~v~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~fD~Iv~npp~~~~~~~~~~~~~~~~~~~l~~~~~~Lk--p 206 (250)
T 1o9g_A 129 QAARRLRERLTAEGGALPCAIRTADVFDPRALSAVLAGSAPDVVLTDLPYGERTHWEGQVPGQPVAGLLRSLASALP--A 206 (250)
T ss_dssp HHHHHHHHHHHHTTSSCCEEEEECCTTCGGGHHHHHTTCCCSEEEEECCGGGSSSSSSCCCHHHHHHHHHHHHHHSC--T
T ss_pred hhhhhhhhhccccccccccceeecccccccccccccCCCCceEEEeCCCeeccccccccccccHHHHHHHHHHHhcC--C
Confidence 44 777666543210 0 234899999987765433 34588999999998 5
Q ss_pred CeEEEEE
Q 026274 171 GSVFITT 177 (241)
Q Consensus 171 ~~~~~~~ 177 (241)
||.+++.
T Consensus 207 gG~l~~~ 213 (250)
T 1o9g_A 207 HAVIAVT 213 (250)
T ss_dssp TCEEEEE
T ss_pred CcEEEEe
Confidence 6666654
|
| >1nt2_A Fibrillarin-like PRE-rRNA processing protein; adeMet, binding motif, RNA binding protein; HET: SAM; 2.90A {Archaeoglobus fulgidus} SCOP: c.66.1.3 | Back alignment and structure |
|---|
Probab=99.32 E-value=1.3e-11 Score=101.58 Aligned_cols=148 Identities=14% Similarity=0.057 Sum_probs=90.2
Q ss_pred ceEEeccH-HHHHHHHHhc--cCCCCCCeEEEecCCCCHHHHHHHHhC--CEEEEEcCCCcHHHHHHHHHHHHHcCCceE
Q 026274 48 GLFVWPCS-VILAEYVWQQ--RYRFSGANVVELGAGTSLPGLVAAKVG--SNVTLTDDSNRIEVLKNMRRVCEMNKLNCR 122 (241)
Q Consensus 48 g~~~W~~s-~~L~~~l~~~--~~~~~~~~VLElGcGtGl~sl~la~~g--~~V~~tD~~~~~~~l~~~~~n~~~n~~~~~ 122 (241)
....|... ..++..+... ....++.+|||+|||+|..+..+++.. .+|+++|+++ .|++.+.++++.. .++.
T Consensus 32 ~y~~~~~~~~~l~~~~~~~l~~~~~~g~~VLDlGcGtG~~~~~la~~~~~~~V~gvD~s~--~~l~~~~~~a~~~-~~v~ 108 (210)
T 1nt2_A 32 GYREWVPWRSKLAAMILKGHRLKLRGDERVLYLGAASGTTVSHLADIVDEGIIYAVEYSA--KPFEKLLELVRER-NNII 108 (210)
T ss_dssp TEEECCGGGCHHHHHHHTSCCCCCCSSCEEEEETCTTSHHHHHHHHHTTTSEEEEECCCH--HHHHHHHHHHHHC-SSEE
T ss_pred hhhhcChhHHHHHHHHHhhcccCCCCCCEEEEECCcCCHHHHHHHHHcCCCEEEEEECCH--HHHHHHHHHHhcC-CCeE
Confidence 44566542 2233333332 123467899999999999999998864 5999999995 6887666655533 2444
Q ss_pred EEEeecCCCCc-CcCCCCCcEEEEcCCcCCCccHHHHHHHHHHHhhcCCCeEEEEEeec-----cCc-hhHH-HHH--HH
Q 026274 123 VMGLTWGFLDA-SIFDLNPNIILGADVFYDASAFDDLFATITYLLQSSPGSVFITTYHN-----RSG-HHLI-EFL--MV 192 (241)
Q Consensus 123 ~~~l~w~~~~~-~~~~~~fDlIl~~dvly~~~~~~~ll~~~~~lL~~~~~~~~~~~~~~-----r~~-~~~~-~~~--~~ 192 (241)
+...|...... ....++||+|+++ +.++.....+++.+.++|+ |||.+++.... +.. ...+ ..+ ++
T Consensus 109 ~~~~d~~~~~~~~~~~~~fD~V~~~--~~~~~~~~~~l~~~~r~Lk--pgG~l~i~~~~~~~~~~~~~~~~~~~~~~~l~ 184 (210)
T 1nt2_A 109 PLLFDASKPWKYSGIVEKVDLIYQD--IAQKNQIEILKANAEFFLK--EKGEVVIMVKARSIDSTAEPEEVFKSVLKEME 184 (210)
T ss_dssp EECSCTTCGGGTTTTCCCEEEEEEC--CCSTTHHHHHHHHHHHHEE--EEEEEEEEEEHHHHCTTSCHHHHHHHHHHHHH
T ss_pred EEEcCCCCchhhcccccceeEEEEe--ccChhHHHHHHHHHHHHhC--CCCEEEEEEecCCccccCCHHHHHHHHHHHHH
Confidence 44444333210 1123689999986 2333445556899999999 66777766432 221 2222 122 45
Q ss_pred HcCCEEEEEec
Q 026274 193 KWGLKCVKLVD 203 (241)
Q Consensus 193 ~~g~~~~~i~~ 203 (241)
+. |++....+
T Consensus 185 ~~-f~~~~~~~ 194 (210)
T 1nt2_A 185 GD-FKIVKHGS 194 (210)
T ss_dssp TT-SEEEEEEE
T ss_pred hh-cEEeeeec
Confidence 66 98888744
|
| >2qm3_A Predicted methyltransferase; putative methyltransferase, structural genomics, pyrococcus PSI-2, protein structure initiative; HET: MSE; 2.05A {Pyrococcus furiosus dsm 3638} | Back alignment and structure |
|---|
Probab=99.32 E-value=3e-11 Score=107.64 Aligned_cols=127 Identities=9% Similarity=0.056 Sum_probs=91.8
Q ss_pred CCCCeEEEecCCCCHHHHHHHHhCC--EEEEEcCCCcHHHHHHHHHHHHHcCC-ceEEEEeecCCCCcCcCCCCCcEEEE
Q 026274 69 FSGANVVELGAGTSLPGLVAAKVGS--NVTLTDDSNRIEVLKNMRRVCEMNKL-NCRVMGLTWGFLDASIFDLNPNIILG 145 (241)
Q Consensus 69 ~~~~~VLElGcGtGl~sl~la~~g~--~V~~tD~~~~~~~l~~~~~n~~~n~~-~~~~~~l~w~~~~~~~~~~~fDlIl~ 145 (241)
.++++|||+| |+|.+++.+++.+. +|+++|+++ ++++.+++|++.+++ ++++...|+.+......+.+||+|++
T Consensus 171 ~~~~~VLDlG-G~G~~~~~la~~~~~~~v~~vDi~~--~~l~~a~~~~~~~g~~~v~~~~~D~~~~l~~~~~~~fD~Vi~ 247 (373)
T 2qm3_A 171 LENKDIFVLG-DDDLTSIALMLSGLPKRIAVLDIDE--RLTKFIEKAANEIGYEDIEIFTFDLRKPLPDYALHKFDTFIT 247 (373)
T ss_dssp STTCEEEEES-CTTCHHHHHHHHTCCSEEEEECSCH--HHHHHHHHHHHHHTCCCEEEECCCTTSCCCTTTSSCBSEEEE
T ss_pred CCCCEEEEEC-CCCHHHHHHHHhCCCCEEEEEECCH--HHHHHHHHHHHHcCCCCEEEEEChhhhhchhhccCCccEEEE
Confidence 4678999999 99999999999875 899999995 799999999999887 67777777765221112358999998
Q ss_pred cCCcCCCccHHHHHHHHHHHhhcCCCe-EEEEEeec-cCch---hHHHHHHH-HcCCEEEEE
Q 026274 146 ADVFYDASAFDDLFATITYLLQSSPGS-VFITTYHN-RSGH---HLIEFLMV-KWGLKCVKL 201 (241)
Q Consensus 146 ~dvly~~~~~~~ll~~~~~lL~~~~~~-~~~~~~~~-r~~~---~~~~~~~~-~~g~~~~~i 201 (241)
+.++ +......+++.+.++|+ ||| +++++... .... ..+..++. +.|+.+..+
T Consensus 248 ~~p~-~~~~~~~~l~~~~~~Lk--pgG~~~~~~~~~~~~~~~~~~~~~~~l~~~~g~~~~~~ 306 (373)
T 2qm3_A 248 DPPE-TLEAIRAFVGRGIATLK--GPRCAGYFGITRRESSLDKWREIQKLLLNEFNVVITDI 306 (373)
T ss_dssp CCCS-SHHHHHHHHHHHHHTBC--STTCEEEEEECTTTCCHHHHHHHHHHHHHTSCCEEEEE
T ss_pred CCCC-chHHHHHHHHHHHHHcc--cCCeEEEEEEecCcCCHHHHHHHHHHHHHhcCcchhhh
Confidence 7654 33346888999999998 444 43444433 1222 23344455 789987665
|
| >3tfw_A Putative O-methyltransferase; PSI-biology, nysgrc, structural genomics, NEW YORK structura genomics research consortium; 1.88A {Klebsiella pneumoniae subsp} | Back alignment and structure |
|---|
Probab=99.32 E-value=1.4e-11 Score=103.56 Aligned_cols=103 Identities=10% Similarity=0.030 Sum_probs=80.4
Q ss_pred CCCCeEEEecCCCCHHHHHHHHh---CCEEEEEcCCCcHHHHHHHHHHHHHcCCc--eEEEEeecCCCCcCcC-CCCCcE
Q 026274 69 FSGANVVELGAGTSLPGLVAAKV---GSNVTLTDDSNRIEVLKNMRRVCEMNKLN--CRVMGLTWGFLDASIF-DLNPNI 142 (241)
Q Consensus 69 ~~~~~VLElGcGtGl~sl~la~~---g~~V~~tD~~~~~~~l~~~~~n~~~n~~~--~~~~~l~w~~~~~~~~-~~~fDl 142 (241)
.++++|||+|||+|..++.+++. +.+|+++|+++ ++++.+++|+..++.. +++...+..+...... ..+||+
T Consensus 62 ~~~~~VLdiG~G~G~~~~~la~~~~~~~~v~~vD~s~--~~~~~a~~~~~~~g~~~~v~~~~~d~~~~l~~~~~~~~fD~ 139 (248)
T 3tfw_A 62 TQAKRILEIGTLGGYSTIWMARELPADGQLLTLEADA--HHAQVARENLQLAGVDQRVTLREGPALQSLESLGECPAFDL 139 (248)
T ss_dssp HTCSEEEEECCTTSHHHHHHHTTSCTTCEEEEEECCH--HHHHHHHHHHHHTTCTTTEEEEESCHHHHHHTCCSCCCCSE
T ss_pred cCCCEEEEecCCchHHHHHHHHhCCCCCEEEEEECCH--HHHHHHHHHHHHcCCCCcEEEEEcCHHHHHHhcCCCCCeEE
Confidence 46789999999999999999997 67999999995 7999999999988764 7777766644222221 248999
Q ss_pred EEEcCCcCCCccHHHHHHHHHHHhhcCCCeEEEEEe
Q 026274 143 ILGADVFYDASAFDDLFATITYLLQSSPGSVFITTY 178 (241)
Q Consensus 143 Il~~dvly~~~~~~~ll~~~~~lL~~~~~~~~~~~~ 178 (241)
|++.- .......+++.+.++|+ |||++++..
T Consensus 140 V~~d~---~~~~~~~~l~~~~~~Lk--pGG~lv~~~ 170 (248)
T 3tfw_A 140 IFIDA---DKPNNPHYLRWALRYSR--PGTLIIGDN 170 (248)
T ss_dssp EEECS---CGGGHHHHHHHHHHTCC--TTCEEEEEC
T ss_pred EEECC---chHHHHHHHHHHHHhcC--CCeEEEEeC
Confidence 99743 35567789999999998 667777663
|
| >1g8a_A Fibrillarin-like PRE-rRNA processing protein; rRNA binding, RNA binding, structural genomics, BSGC structure funded by NIH; 1.40A {Pyrococcus horikoshii} SCOP: c.66.1.3 PDB: 2nnw_B 3nmu_F* 3nvk_I* 3nvm_B 1pry_A | Back alignment and structure |
|---|
Probab=99.32 E-value=8.4e-11 Score=96.96 Aligned_cols=106 Identities=13% Similarity=0.094 Sum_probs=77.8
Q ss_pred CCCCCeEEEecCCCCHHHHHHHHh-C--CEEEEEcCCCcHHHHHHHHHHHHHcCCceEEEEeecCCCCc-CcCCCCCcEE
Q 026274 68 RFSGANVVELGAGTSLPGLVAAKV-G--SNVTLTDDSNRIEVLKNMRRVCEMNKLNCRVMGLTWGFLDA-SIFDLNPNII 143 (241)
Q Consensus 68 ~~~~~~VLElGcGtGl~sl~la~~-g--~~V~~tD~~~~~~~l~~~~~n~~~n~~~~~~~~l~w~~~~~-~~~~~~fDlI 143 (241)
..++.+|||+|||+|..++.+++. | .+|+++|+++ ++++.+++|++.+ .++.+...|..+... .....+||+|
T Consensus 71 ~~~~~~vLDlG~G~G~~~~~la~~~~~~~~v~~vD~s~--~~~~~~~~~~~~~-~~v~~~~~d~~~~~~~~~~~~~~D~v 147 (227)
T 1g8a_A 71 IKPGKSVLYLGIASGTTASHVSDIVGWEGKIFGIEFSP--RVLRELVPIVEER-RNIVPILGDATKPEEYRALVPKVDVI 147 (227)
T ss_dssp CCTTCEEEEETTTSTTHHHHHHHHHCTTSEEEEEESCH--HHHHHHHHHHSSC-TTEEEEECCTTCGGGGTTTCCCEEEE
T ss_pred CCCCCEEEEEeccCCHHHHHHHHHhCCCeEEEEEECCH--HHHHHHHHHHhcc-CCCEEEEccCCCcchhhcccCCceEE
Confidence 446789999999999999999976 4 5999999995 6999999988766 567777777654211 1123589999
Q ss_pred EEcCCcCCCccHHHHHHHHHHHhhcCCCeEEEEEeec
Q 026274 144 LGADVFYDASAFDDLFATITYLLQSSPGSVFITTYHN 180 (241)
Q Consensus 144 l~~dvly~~~~~~~ll~~~~~lL~~~~~~~~~~~~~~ 180 (241)
++..+ .+.....+++.+.++|+ |||.+++....
T Consensus 148 ~~~~~--~~~~~~~~l~~~~~~Lk--pgG~l~~~~~~ 180 (227)
T 1g8a_A 148 FEDVA--QPTQAKILIDNAEVYLK--RGGYGMIAVKS 180 (227)
T ss_dssp EECCC--STTHHHHHHHHHHHHEE--EEEEEEEEEEG
T ss_pred EECCC--CHhHHHHHHHHHHHhcC--CCCEEEEEEec
Confidence 97544 33334455999999998 56666655443
|
| >3tma_A Methyltransferase; thump domain; 2.05A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=99.32 E-value=2.6e-11 Score=107.09 Aligned_cols=136 Identities=19% Similarity=0.083 Sum_probs=97.4
Q ss_pred HHHHHHHHhccCCCCCCeEEEecCCCCHHHHHHHHhC---CEEEEEcCCCcHHHHHHHHHHHHHcCC-ceEEEEeecCCC
Q 026274 56 VILAEYVWQQRYRFSGANVVELGAGTSLPGLVAAKVG---SNVTLTDDSNRIEVLKNMRRVCEMNKL-NCRVMGLTWGFL 131 (241)
Q Consensus 56 ~~L~~~l~~~~~~~~~~~VLElGcGtGl~sl~la~~g---~~V~~tD~~~~~~~l~~~~~n~~~n~~-~~~~~~l~w~~~ 131 (241)
..++..+.......++.+|||+|||+|.+++.++..+ .+|+++|+++ .+++.+++|++.+++ ++++...|..+.
T Consensus 189 ~~la~~l~~~~~~~~~~~vLD~gcGsG~~~ie~a~~~~~~~~v~g~Di~~--~~i~~a~~n~~~~g~~~i~~~~~D~~~~ 266 (354)
T 3tma_A 189 PVLAQALLRLADARPGMRVLDPFTGSGTIALEAASTLGPTSPVYAGDLDE--KRLGLAREAALASGLSWIRFLRADARHL 266 (354)
T ss_dssp HHHHHHHHHHTTCCTTCCEEESSCTTSHHHHHHHHHHCTTSCEEEEESCH--HHHHHHHHHHHHTTCTTCEEEECCGGGG
T ss_pred HHHHHHHHHHhCCCCCCEEEeCCCCcCHHHHHHHHhhCCCceEEEEECCH--HHHHHHHHHHHHcCCCceEEEeCChhhC
Confidence 4566666555455567899999999999999999975 6999999995 799999999999887 578888777654
Q ss_pred CcCcCCCCCcEEEEcCCcCCCc--------cHHHHHHHHHHHhhcCCCeEEEEEeeccCchhHHHHHHHHcCCEEEEE
Q 026274 132 DASIFDLNPNIILGADVFYDAS--------AFDDLFATITYLLQSSPGSVFITTYHNRSGHHLIEFLMVKWGLKCVKL 201 (241)
Q Consensus 132 ~~~~~~~~fDlIl~~dvly~~~--------~~~~ll~~~~~lL~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~i 201 (241)
.. ....||+|+++.++.... ....+++.+.++|+ +|+.+++.... ......+.+ +|++....
T Consensus 267 ~~--~~~~~D~Ii~npPyg~r~~~~~~~~~~~~~~~~~~~~~Lk--pgG~l~i~t~~---~~~~~~~~~-~g~~~~~~ 336 (354)
T 3tma_A 267 PR--FFPEVDRILANPPHGLRLGRKEGLFHLYWDFLRGALALLP--PGGRVALLTLR---PALLKRALP-PGFALRHA 336 (354)
T ss_dssp GG--TCCCCSEEEECCCSCC----CHHHHHHHHHHHHHHHHTSC--TTCEEEEEESC---HHHHHHHCC-TTEEEEEE
T ss_pred cc--ccCCCCEEEECCCCcCccCCcccHHHHHHHHHHHHHHhcC--CCcEEEEEeCC---HHHHHHHhh-cCcEEEEE
Confidence 32 234689999877654321 23778889999998 44544443222 233455555 88887654
|
| >3bgv_A MRNA CAP guanine-N7 methyltransferase; alternative splicing, mRNA capping, mRNA processing, nucleus, phosphoprotein, RNA-binding; HET: SAH; 2.30A {Homo sapiens} PDB: 3epp_A* | Back alignment and structure |
|---|
Probab=99.31 E-value=1.1e-11 Score=107.53 Aligned_cols=124 Identities=20% Similarity=0.156 Sum_probs=87.9
Q ss_pred eccHHHHHHHHHhccC-CCCCCeEEEecCCCCHHHHHHHHh-CCEEEEEcCCCcHHHHHHHHHHHHHcC--------Cce
Q 026274 52 WPCSVILAEYVWQQRY-RFSGANVVELGAGTSLPGLVAAKV-GSNVTLTDDSNRIEVLKNMRRVCEMNK--------LNC 121 (241)
Q Consensus 52 W~~s~~L~~~l~~~~~-~~~~~~VLElGcGtGl~sl~la~~-g~~V~~tD~~~~~~~l~~~~~n~~~n~--------~~~ 121 (241)
|-.+.++..++..... ..++.+|||+|||+|..+..+++. +.+|+++|+++ ++++.++++....+ .++
T Consensus 15 ~~k~~l~~~~~~~l~~~~~~~~~VLDlGcG~G~~~~~l~~~~~~~v~gvD~s~--~~l~~a~~~~~~~~~~~~~~~~~~~ 92 (313)
T 3bgv_A 15 WMKSVLIGEFLEKVRQKKKRDITVLDLGCGKGGDLLKWKKGRINKLVCTDIAD--VSVKQCQQRYEDMKNRRDSEYIFSA 92 (313)
T ss_dssp HHHHHHHHHHHHHHHHTC--CCEEEEETCTTTTTHHHHHHTTCSEEEEEESCH--HHHHHHHHHHHHHHSSSCC-CCCEE
T ss_pred HHHHHHHHHHHHHhhhccCCCCEEEEECCCCcHHHHHHHhcCCCEEEEEeCCH--HHHHHHHHHHHHhhhcccccccceE
Confidence 4444444444433221 125679999999999998888876 45999999995 69999998876542 356
Q ss_pred EEEEeecCCCCc--Cc--CCCCCcEEEEcCCcCCC----ccHHHHHHHHHHHhhcCCCeEEEEEee
Q 026274 122 RVMGLTWGFLDA--SI--FDLNPNIILGADVFYDA----SAFDDLFATITYLLQSSPGSVFITTYH 179 (241)
Q Consensus 122 ~~~~l~w~~~~~--~~--~~~~fDlIl~~dvly~~----~~~~~ll~~~~~lL~~~~~~~~~~~~~ 179 (241)
.+...|..+... +. .+.+||+|+++.++++. +....+++.+.++|+ |||.+++...
T Consensus 93 ~~~~~D~~~~~~~~~~~~~~~~fD~V~~~~~l~~~~~~~~~~~~~l~~~~~~Lk--pgG~li~~~~ 156 (313)
T 3bgv_A 93 EFITADSSKELLIDKFRDPQMCFDICSCQFVCHYSFESYEQADMMLRNACERLS--PGGYFIGTTP 156 (313)
T ss_dssp EEEECCTTTSCSTTTCSSTTCCEEEEEEETCGGGGGGSHHHHHHHHHHHHTTEE--EEEEEEEEEE
T ss_pred EEEEecccccchhhhcccCCCCEEEEEEecchhhccCCHHHHHHHHHHHHHHhC--CCcEEEEecC
Confidence 777777765421 12 23489999999999775 445789999999998 6777776644
|
| >3ntv_A MW1564 protein; rossmann fold, putative methyltransferase, transferase; HET: MSE; 1.55A {Staphylococcus aureus} | Back alignment and structure |
|---|
Probab=99.31 E-value=5.6e-12 Score=104.92 Aligned_cols=102 Identities=15% Similarity=0.141 Sum_probs=81.4
Q ss_pred CCCCeEEEecCCCCHHHHHHHH--hCCEEEEEcCCCcHHHHHHHHHHHHHcCC--ceEEEEeecCCCCcCcCCCCCcEEE
Q 026274 69 FSGANVVELGAGTSLPGLVAAK--VGSNVTLTDDSNRIEVLKNMRRVCEMNKL--NCRVMGLTWGFLDASIFDLNPNIIL 144 (241)
Q Consensus 69 ~~~~~VLElGcGtGl~sl~la~--~g~~V~~tD~~~~~~~l~~~~~n~~~n~~--~~~~~~l~w~~~~~~~~~~~fDlIl 144 (241)
.++++|||+|||+|..++.+++ .+.+|+++|+++ ++++.++++++.+++ ++++...+..+......+.+||+|+
T Consensus 70 ~~~~~vLDiG~G~G~~~~~la~~~~~~~v~~vD~~~--~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~fD~V~ 147 (232)
T 3ntv_A 70 NNVKNILEIGTAIGYSSMQFASISDDIHVTTIERNE--TMIQYAKQNLATYHFENQVRIIEGNALEQFENVNDKVYDMIF 147 (232)
T ss_dssp HTCCEEEEECCSSSHHHHHHHTTCTTCEEEEEECCH--HHHHHHHHHHHHTTCTTTEEEEESCGGGCHHHHTTSCEEEEE
T ss_pred cCCCEEEEEeCchhHHHHHHHHhCCCCEEEEEECCH--HHHHHHHHHHHHcCCCCcEEEEECCHHHHHHhhccCCccEEE
Confidence 4678999999999999999999 456999999995 799999999998886 5777777765432202256899999
Q ss_pred EcCCcCCCccHHHHHHHHHHHhhcCCCeEEEEE
Q 026274 145 GADVFYDASAFDDLFATITYLLQSSPGSVFITT 177 (241)
Q Consensus 145 ~~dvly~~~~~~~ll~~~~~lL~~~~~~~~~~~ 177 (241)
+.. .......+++.+.++|+ |||++++.
T Consensus 148 ~~~---~~~~~~~~l~~~~~~Lk--pgG~lv~d 175 (232)
T 3ntv_A 148 IDA---AKAQSKKFFEIYTPLLK--HQGLVITD 175 (232)
T ss_dssp EET---TSSSHHHHHHHHGGGEE--EEEEEEEE
T ss_pred EcC---cHHHHHHHHHHHHHhcC--CCeEEEEe
Confidence 653 35678889999999998 67887774
|
| >3tm4_A TRNA (guanine N2-)-methyltransferase TRM14; rossmann fold, thump domain, tRNA methyltransferase; HET: SAM; 1.95A {Pyrococcus furiosus} PDB: 3tlj_A* 3tm5_A* | Back alignment and structure |
|---|
Probab=99.31 E-value=2.2e-11 Score=108.64 Aligned_cols=134 Identities=10% Similarity=0.056 Sum_probs=96.8
Q ss_pred HHHHHHHHhccCCCCCCeEEEecCCCCHHHHHHHHhCC--EEEEEcCCCcHHHHHHHHHHHHHcCC--ceEEEEeecCCC
Q 026274 56 VILAEYVWQQRYRFSGANVVELGAGTSLPGLVAAKVGS--NVTLTDDSNRIEVLKNMRRVCEMNKL--NCRVMGLTWGFL 131 (241)
Q Consensus 56 ~~L~~~l~~~~~~~~~~~VLElGcGtGl~sl~la~~g~--~V~~tD~~~~~~~l~~~~~n~~~n~~--~~~~~~l~w~~~ 131 (241)
..++..+.... ..++.+|||+|||+|.+++.+++.+. +|+++|+++ .|++.+++|+..+++ ++++...|..+.
T Consensus 204 ~~la~~l~~~~-~~~~~~vLD~gCGsG~~~i~~a~~~~~~~v~g~Dis~--~~l~~A~~n~~~~gl~~~i~~~~~D~~~~ 280 (373)
T 3tm4_A 204 ASIANAMIELA-ELDGGSVLDPMCGSGTILIELALRRYSGEIIGIEKYR--KHLIGAEMNALAAGVLDKIKFIQGDATQL 280 (373)
T ss_dssp HHHHHHHHHHH-TCCSCCEEETTCTTCHHHHHHHHTTCCSCEEEEESCH--HHHHHHHHHHHHTTCGGGCEEEECCGGGG
T ss_pred HHHHHHHHHhh-cCCCCEEEEccCcCcHHHHHHHHhCCCCeEEEEeCCH--HHHHHHHHHHHHcCCCCceEEEECChhhC
Confidence 34455544433 45678999999999999999999987 899999995 799999999999997 678888777654
Q ss_pred CcCcCCCCCcEEEEcCCcCCC----cc----HHHHHHHHHHHhhcCCCeEEEEEeeccCchhHHHHHHHHcCCEEEEE
Q 026274 132 DASIFDLNPNIILGADVFYDA----SA----FDDLFATITYLLQSSPGSVFITTYHNRSGHHLIEFLMVKWGLKCVKL 201 (241)
Q Consensus 132 ~~~~~~~~fDlIl~~dvly~~----~~----~~~ll~~~~~lL~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~i 201 (241)
. ..+.+||+|+++.++... .. ...+++.++++| ++..+++.. ....+...+++.||+....
T Consensus 281 ~--~~~~~fD~Ii~npPyg~r~~~~~~~~~ly~~~~~~l~r~l---~g~~~~i~~----~~~~~~~~~~~~G~~~~~~ 349 (373)
T 3tm4_A 281 S--QYVDSVDFAISNLPYGLKIGKKSMIPDLYMKFFNELAKVL---EKRGVFITT----EKKAIEEAIAENGFEIIHH 349 (373)
T ss_dssp G--GTCSCEEEEEEECCCC------CCHHHHHHHHHHHHHHHE---EEEEEEEES----CHHHHHHHHHHTTEEEEEE
T ss_pred C--cccCCcCEEEECCCCCcccCcchhHHHHHHHHHHHHHHHc---CCeEEEEEC----CHHHHHHHHHHcCCEEEEE
Confidence 2 234689999997775432 11 366778888877 234444442 2334555677889988764
|
| >3v97_A Ribosomal RNA large subunit methyltransferase L; YCBY, RNA methyltransferase, ribosome RNA, SAH, RLML; HET: SAH OSU; 2.20A {Escherichia coli} PDB: 3v8v_A* | Back alignment and structure |
|---|
Probab=99.31 E-value=1.4e-11 Score=118.32 Aligned_cols=127 Identities=18% Similarity=0.121 Sum_probs=97.6
Q ss_pred CCCCeEEEecCCCCHHHHHHHHhCC-EEEEEcCCCcHHHHHHHHHHHHHcCCc---eEEEEeecCCCCcCcCCCCCcEEE
Q 026274 69 FSGANVVELGAGTSLPGLVAAKVGS-NVTLTDDSNRIEVLKNMRRVCEMNKLN---CRVMGLTWGFLDASIFDLNPNIIL 144 (241)
Q Consensus 69 ~~~~~VLElGcGtGl~sl~la~~g~-~V~~tD~~~~~~~l~~~~~n~~~n~~~---~~~~~l~w~~~~~~~~~~~fDlIl 144 (241)
.+|++|||+|||||.+++.+++.|+ +|+++|+|+ .+++.+++|++.|++. +++...|..+... ....+||+|+
T Consensus 538 ~~g~~VLDlg~GtG~~sl~aa~~ga~~V~aVD~s~--~al~~a~~N~~~ngl~~~~v~~i~~D~~~~l~-~~~~~fD~Ii 614 (703)
T 3v97_A 538 SKGKDFLNLFSYTGSATVHAGLGGARSTTTVDMSR--TYLEWAERNLRLNGLTGRAHRLIQADCLAWLR-EANEQFDLIF 614 (703)
T ss_dssp CTTCEEEEESCTTCHHHHHHHHTTCSEEEEEESCH--HHHHHHHHHHHHTTCCSTTEEEEESCHHHHHH-HCCCCEEEEE
T ss_pred cCCCcEEEeeechhHHHHHHHHCCCCEEEEEeCCH--HHHHHHHHHHHHcCCCccceEEEecCHHHHHH-hcCCCccEEE
Confidence 3688999999999999999999888 699999995 7999999999999875 7777766554321 1245899999
Q ss_pred EcCCcCC-----------CccHHHHHHHHHHHhhcCCCeEEEEEeeccCchhHHHHHHHHcCCEEEEE
Q 026274 145 GADVFYD-----------ASAFDDLFATITYLLQSSPGSVFITTYHNRSGHHLIEFLMVKWGLKCVKL 201 (241)
Q Consensus 145 ~~dvly~-----------~~~~~~ll~~~~~lL~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~i 201 (241)
+..+.|. ......+++.+.++|+ |||.++++...+..... ...+.++|++...+
T Consensus 615 ~DPP~f~~~~~~~~~~~~~~~~~~ll~~a~~~Lk--pgG~L~~s~~~~~~~~~-~~~l~~~g~~~~~i 679 (703)
T 3v97_A 615 IDPPTFSNSKRMEDAFDVQRDHLALMKDLKRLLR--AGGTIMFSNNKRGFRMD-LDGLAKLGLKAQEI 679 (703)
T ss_dssp ECCCSBC-------CCBHHHHHHHHHHHHHHHEE--EEEEEEEEECCTTCCCC-HHHHHHTTEEEEEC
T ss_pred ECCccccCCccchhHHHHHHHHHHHHHHHHHhcC--CCcEEEEEECCcccccC-HHHHHHcCCceeee
Confidence 8776543 2356788999999998 67887777666544333 33456789887766
|
| >3gwz_A MMCR; methyltransferase, mitomycin, S-adenosyl methionine, transferase; HET: MSE SAH; 1.91A {Streptomyces lavendulae} PDB: 3gxo_A* | Back alignment and structure |
|---|
Probab=99.31 E-value=6.5e-11 Score=105.21 Aligned_cols=126 Identities=19% Similarity=0.214 Sum_probs=93.8
Q ss_pred CCCCCeEEEecCCCCHHHHHHHHh--CCEEEEEcCCCcHHHHHHHHHHHHHcCC--ceEEEEeecCCCCcCcCCCCCcEE
Q 026274 68 RFSGANVVELGAGTSLPGLVAAKV--GSNVTLTDDSNRIEVLKNMRRVCEMNKL--NCRVMGLTWGFLDASIFDLNPNII 143 (241)
Q Consensus 68 ~~~~~~VLElGcGtGl~sl~la~~--g~~V~~tD~~~~~~~l~~~~~n~~~n~~--~~~~~~l~w~~~~~~~~~~~fDlI 143 (241)
..++.+|||+|||+|..+..+++. +.+++++|+ + .+++.+++++...++ ++++...|+.+ +... +||+|
T Consensus 200 ~~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~--~~~~~a~~~~~~~~l~~~v~~~~~d~~~---~~p~-~~D~v 272 (369)
T 3gwz_A 200 FSGAATAVDIGGGRGSLMAAVLDAFPGLRGTLLER-P--PVAEEARELLTGRGLADRCEILPGDFFE---TIPD-GADVY 272 (369)
T ss_dssp CTTCSEEEEETCTTSHHHHHHHHHCTTCEEEEEEC-H--HHHHHHHHHHHHTTCTTTEEEEECCTTT---CCCS-SCSEE
T ss_pred CccCcEEEEeCCCccHHHHHHHHHCCCCeEEEEcC-H--HHHHHHHHhhhhcCcCCceEEeccCCCC---CCCC-CceEE
Confidence 345689999999999999999987 458999999 5 699999999887765 57888877762 2222 79999
Q ss_pred EEcCCcCCCccHH--HHHHHHHHHhhcCCCeEEEEE-eecc----------------------CchhHHHHHHHHcCCEE
Q 026274 144 LGADVFYDASAFD--DLFATITYLLQSSPGSVFITT-YHNR----------------------SGHHLIEFLMVKWGLKC 198 (241)
Q Consensus 144 l~~dvly~~~~~~--~ll~~~~~lL~~~~~~~~~~~-~~~r----------------------~~~~~~~~~~~~~g~~~ 198 (241)
++..++++.++.. .+++.+.++|+ |||.+++. .... .+......++++.||+.
T Consensus 273 ~~~~vlh~~~d~~~~~~L~~~~~~L~--pgG~l~i~e~~~~~~~~~~~~~~d~~~~~~~~g~~~t~~e~~~ll~~aGf~~ 350 (369)
T 3gwz_A 273 LIKHVLHDWDDDDVVRILRRIATAMK--PDSRLLVIDNLIDERPAASTLFVDLLLLVLVGGAERSESEFAALLEKSGLRV 350 (369)
T ss_dssp EEESCGGGSCHHHHHHHHHHHHTTCC--TTCEEEEEEEBCCSSCCHHHHHHHHHHHHHHSCCCBCHHHHHHHHHTTTEEE
T ss_pred EhhhhhccCCHHHHHHHHHHHHHHcC--CCCEEEEEEeccCCCCCCchhHhhHHHHhhcCCccCCHHHHHHHHHHCCCeE
Confidence 9999998877665 79999999998 45554443 2111 11223445567889988
Q ss_pred EEEe
Q 026274 199 VKLV 202 (241)
Q Consensus 199 ~~i~ 202 (241)
..+.
T Consensus 351 ~~~~ 354 (369)
T 3gwz_A 351 ERSL 354 (369)
T ss_dssp EEEE
T ss_pred EEEE
Confidence 8874
|
| >2zfu_A Nucleomethylin, cerebral protein 1; nucleolar protein, SAM-binding protein, protein structure, N phosphoprotein, nuclear protein; HET: SAH; 2.00A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.30 E-value=6e-11 Score=96.87 Aligned_cols=109 Identities=16% Similarity=0.149 Sum_probs=81.6
Q ss_pred CCCCeEEEecCCCCHHHHHHHHhCCEEEEEcCCCcHHHHHHHHHHHHHcCCceEEEEeecCCCCcCcCCCCCcEEEEcCC
Q 026274 69 FSGANVVELGAGTSLPGLVAAKVGSNVTLTDDSNRIEVLKNMRRVCEMNKLNCRVMGLTWGFLDASIFDLNPNIILGADV 148 (241)
Q Consensus 69 ~~~~~VLElGcGtGl~sl~la~~g~~V~~tD~~~~~~~l~~~~~n~~~n~~~~~~~~l~w~~~~~~~~~~~fDlIl~~dv 148 (241)
.++.+|||+|||+|..+..+ +.+|+++|+++. ++.+...+..+. +..+.+||+|+++.+
T Consensus 66 ~~~~~vLDiG~G~G~~~~~l---~~~v~~~D~s~~----------------~~~~~~~d~~~~--~~~~~~fD~v~~~~~ 124 (215)
T 2zfu_A 66 PASLVVADFGCGDCRLASSI---RNPVHCFDLASL----------------DPRVTVCDMAQV--PLEDESVDVAVFCLS 124 (215)
T ss_dssp CTTSCEEEETCTTCHHHHHC---CSCEEEEESSCS----------------STTEEESCTTSC--SCCTTCEEEEEEESC
T ss_pred CCCCeEEEECCcCCHHHHHh---hccEEEEeCCCC----------------CceEEEeccccC--CCCCCCEeEEEEehh
Confidence 45679999999999988777 368999999972 344556665542 333568999999999
Q ss_pred cCCCccHHHHHHHHHHHhhcCCCeEEEEE-eeccC-chhHHHHHHHHcCCEEEEE
Q 026274 149 FYDASAFDDLFATITYLLQSSPGSVFITT-YHNRS-GHHLIEFLMVKWGLKCVKL 201 (241)
Q Consensus 149 ly~~~~~~~ll~~~~~lL~~~~~~~~~~~-~~~r~-~~~~~~~~~~~~g~~~~~i 201 (241)
+++ .+...+++.+.++|+ +||.+++. ...+. ....+..++++.||++...
T Consensus 125 l~~-~~~~~~l~~~~~~L~--~gG~l~i~~~~~~~~~~~~~~~~l~~~Gf~~~~~ 176 (215)
T 2zfu_A 125 LMG-TNIRDFLEEANRVLK--PGGLLKVAEVSSRFEDVRTFLRAVTKLGFKIVSK 176 (215)
T ss_dssp CCS-SCHHHHHHHHHHHEE--EEEEEEEEECGGGCSCHHHHHHHHHHTTEEEEEE
T ss_pred ccc-cCHHHHHHHHHHhCC--CCeEEEEEEcCCCCCCHHHHHHHHHHCCCEEEEE
Confidence 975 788999999999998 56666654 33322 3445666788999998875
|
| >1i9g_A Hypothetical protein RV2118C; mtase, adoMet, crystal, structural genomics, protein structure initiative; HET: SAM; 1.98A {Mycobacterium tuberculosis} SCOP: c.66.1.13 | Back alignment and structure |
|---|
Probab=99.30 E-value=2.1e-11 Score=103.61 Aligned_cols=132 Identities=18% Similarity=0.149 Sum_probs=91.8
Q ss_pred HHHhccCCCCCCeEEEecCCCCHHHHHHHHh---CCEEEEEcCCCcHHHHHHHHHHHHHc-C---CceEEEEeecCCCCc
Q 026274 61 YVWQQRYRFSGANVVELGAGTSLPGLVAAKV---GSNVTLTDDSNRIEVLKNMRRVCEMN-K---LNCRVMGLTWGFLDA 133 (241)
Q Consensus 61 ~l~~~~~~~~~~~VLElGcGtGl~sl~la~~---g~~V~~tD~~~~~~~l~~~~~n~~~n-~---~~~~~~~l~w~~~~~ 133 (241)
++.......++.+|||+|||+|.++..+++. +.+|+++|+++ ++++.+++|+..+ + .++++...|..+.
T Consensus 90 ~i~~~~~~~~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~vD~~~--~~~~~a~~~~~~~~g~~~~~v~~~~~d~~~~-- 165 (280)
T 1i9g_A 90 QIVHEGDIFPGARVLEAGAGSGALTLSLLRAVGPAGQVISYEQRA--DHAEHARRNVSGCYGQPPDNWRLVVSDLADS-- 165 (280)
T ss_dssp HHHHHTTCCTTCEEEEECCTTSHHHHHHHHHHCTTSEEEEECSCH--HHHHHHHHHHHHHHTSCCTTEEEECSCGGGC--
T ss_pred HHHHHcCCCCCCEEEEEcccccHHHHHHHHHhCCCCEEEEEeCCH--HHHHHHHHHHHHhcCCCCCcEEEEECchHhc--
Confidence 3333334457789999999999999999985 56999999995 7999999999877 4 3567766665543
Q ss_pred CcCCCCCcEEEEcCCcCCCccHHHHHHHHHHHhhcCCCeEEEEEeeccCc-hhHHHHHHHHcCCEEEEEec
Q 026274 134 SIFDLNPNIILGADVFYDASAFDDLFATITYLLQSSPGSVFITTYHNRSG-HHLIEFLMVKWGLKCVKLVD 203 (241)
Q Consensus 134 ~~~~~~fDlIl~~dvly~~~~~~~ll~~~~~lL~~~~~~~~~~~~~~r~~-~~~~~~~~~~~g~~~~~i~~ 203 (241)
...+.+||+|++ +..+...+++.+.++|+ ++|.+++....... ......+.+..+|....+.+
T Consensus 166 ~~~~~~~D~v~~-----~~~~~~~~l~~~~~~L~--pgG~l~~~~~~~~~~~~~~~~l~~~~~f~~~~~~~ 229 (280)
T 1i9g_A 166 ELPDGSVDRAVL-----DMLAPWEVLDAVSRLLV--AGGVLMVYVATVTQLSRIVEALRAKQCWTEPRAWE 229 (280)
T ss_dssp CCCTTCEEEEEE-----ESSCGGGGHHHHHHHEE--EEEEEEEEESSHHHHHHHHHHHHHHSSBCCCEEEC
T ss_pred CCCCCceeEEEE-----CCcCHHHHHHHHHHhCC--CCCEEEEEeCCHHHHHHHHHHHHhcCCcCCcEEEE
Confidence 222458999998 33466688999999998 56666655443222 22333333447887666544
|
| >3tr6_A O-methyltransferase; cellular processes; HET: SAH; 2.70A {Coxiella burnetii} SCOP: c.66.1.0 | Back alignment and structure |
|---|
Probab=99.30 E-value=4.2e-12 Score=104.53 Aligned_cols=102 Identities=13% Similarity=0.108 Sum_probs=79.7
Q ss_pred CCCCeEEEecCCCCHHHHHHHHh---CCEEEEEcCCCcHHHHHHHHHHHHHcCCc--eEEEEeecCCCCcCcCC----CC
Q 026274 69 FSGANVVELGAGTSLPGLVAAKV---GSNVTLTDDSNRIEVLKNMRRVCEMNKLN--CRVMGLTWGFLDASIFD----LN 139 (241)
Q Consensus 69 ~~~~~VLElGcGtGl~sl~la~~---g~~V~~tD~~~~~~~l~~~~~n~~~n~~~--~~~~~l~w~~~~~~~~~----~~ 139 (241)
.++++|||+|||+|..++.+++. +.+|+++|+++ ++++.++++++.++.. +++...++.+....... .+
T Consensus 63 ~~~~~vLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~--~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~~ 140 (225)
T 3tr6_A 63 MQAKKVIDIGTFTGYSAIAMGLALPKDGTLITCDVDE--KSTALAKEYWEKAGLSDKIGLRLSPAKDTLAELIHAGQAWQ 140 (225)
T ss_dssp HTCSEEEEECCTTSHHHHHHHTTCCTTCEEEEEESCH--HHHHHHHHHHHHTTCTTTEEEEESCHHHHHHHHHTTTCTTC
T ss_pred hCCCEEEEeCCcchHHHHHHHHhCCCCCEEEEEeCCH--HHHHHHHHHHHHCCCCCceEEEeCCHHHHHHHhhhccCCCC
Confidence 46779999999999999999987 67999999995 7999999999988764 77776665433211111 58
Q ss_pred CcEEEEcCCcCCCccHHHHHHHHHHHhhcCCCeEEEEE
Q 026274 140 PNIILGADVFYDASAFDDLFATITYLLQSSPGSVFITT 177 (241)
Q Consensus 140 fDlIl~~dvly~~~~~~~ll~~~~~lL~~~~~~~~~~~ 177 (241)
||+|+... .......+++.+.++|+ |||++++.
T Consensus 141 fD~v~~~~---~~~~~~~~l~~~~~~L~--pgG~lv~~ 173 (225)
T 3tr6_A 141 YDLIYIDA---DKANTDLYYEESLKLLR--EGGLIAVD 173 (225)
T ss_dssp EEEEEECS---CGGGHHHHHHHHHHHEE--EEEEEEEE
T ss_pred ccEEEECC---CHHHHHHHHHHHHHhcC--CCcEEEEe
Confidence 99999543 24567889999999998 67877775
|
| >3fpf_A Mtnas, putative uncharacterized protein; thermonicotianamine, nicotianamine, biosynthetic protein; HET: TNA MTA; 1.66A {Methanothermobacter thermautotrophicusorganism_taxid} PDB: 3fpe_A* 3fph_A* 3fpg_A* 3fpj_A* 3o31_A* | Back alignment and structure |
|---|
Probab=99.30 E-value=3.9e-11 Score=103.57 Aligned_cols=101 Identities=18% Similarity=0.215 Sum_probs=79.7
Q ss_pred CCCCCCeEEEecCCCC-HHHHHHHH-hCCEEEEEcCCCcHHHHHHHHHHHHHcCC-ceEEEEeecCCCCcCcCCCCCcEE
Q 026274 67 YRFSGANVVELGAGTS-LPGLVAAK-VGSNVTLTDDSNRIEVLKNMRRVCEMNKL-NCRVMGLTWGFLDASIFDLNPNII 143 (241)
Q Consensus 67 ~~~~~~~VLElGcGtG-l~sl~la~-~g~~V~~tD~~~~~~~l~~~~~n~~~n~~-~~~~~~l~w~~~~~~~~~~~fDlI 143 (241)
...++.+|||+|||+| +.++.+|+ .|++|+++|+++ +|++.++++++..+. ++++...|..+. .+.+||+|
T Consensus 119 ~l~~g~rVLDIGcG~G~~ta~~lA~~~ga~V~gIDis~--~~l~~Ar~~~~~~gl~~v~~v~gDa~~l----~d~~FDvV 192 (298)
T 3fpf_A 119 RFRRGERAVFIGGGPLPLTGILLSHVYGMRVNVVEIEP--DIAELSRKVIEGLGVDGVNVITGDETVI----DGLEFDVL 192 (298)
T ss_dssp TCCTTCEEEEECCCSSCHHHHHHHHTTCCEEEEEESSH--HHHHHHHHHHHHHTCCSEEEEESCGGGG----GGCCCSEE
T ss_pred CCCCcCEEEEECCCccHHHHHHHHHccCCEEEEEECCH--HHHHHHHHHHHhcCCCCeEEEECchhhC----CCCCcCEE
Confidence 4457899999999987 56677787 488999999995 799999999987775 567776665442 25689999
Q ss_pred EEcCCcCCCccHHHHHHHHHHHhhcCCCeEEEEEe
Q 026274 144 LGADVFYDASAFDDLFATITYLLQSSPGSVFITTY 178 (241)
Q Consensus 144 l~~dvly~~~~~~~ll~~~~~lL~~~~~~~~~~~~ 178 (241)
+.+-. .++.+.+++.+.+.|+ |||.+++..
T Consensus 193 ~~~a~---~~d~~~~l~el~r~Lk--PGG~Lvv~~ 222 (298)
T 3fpf_A 193 MVAAL---AEPKRRVFRNIHRYVD--TETRIIYRT 222 (298)
T ss_dssp EECTT---CSCHHHHHHHHHHHCC--TTCEEEEEE
T ss_pred EECCC---ccCHHHHHHHHHHHcC--CCcEEEEEc
Confidence 97654 4788899999999998 667666553
|
| >1qzz_A RDMB, aclacinomycin-10-hydroxylase; anthracycline, methyltransferase, polyketide, tailoring enzymes, structural proteomics in E spine; HET: SAM; 2.10A {Streptomyces purpurascens} SCOP: a.4.5.29 c.66.1.12 PDB: 1r00_A* 1xds_A* 1xdu_A* | Back alignment and structure |
|---|
Probab=99.30 E-value=4.9e-11 Score=105.63 Aligned_cols=125 Identities=15% Similarity=0.048 Sum_probs=93.6
Q ss_pred CCCCeEEEecCCCCHHHHHHHHh--CCEEEEEcCCCcHHHHHHHHHHHHHcCC--ceEEEEeecCCCCcCcCCCCCcEEE
Q 026274 69 FSGANVVELGAGTSLPGLVAAKV--GSNVTLTDDSNRIEVLKNMRRVCEMNKL--NCRVMGLTWGFLDASIFDLNPNIIL 144 (241)
Q Consensus 69 ~~~~~VLElGcGtGl~sl~la~~--g~~V~~tD~~~~~~~l~~~~~n~~~n~~--~~~~~~l~w~~~~~~~~~~~fDlIl 144 (241)
.++.+|||+|||+|..+..+++. +.+++++|+ + .+++.+++++..+++ ++++...|+.+. . +..||+|+
T Consensus 181 ~~~~~vlDvG~G~G~~~~~l~~~~~~~~~~~~D~-~--~~~~~a~~~~~~~~~~~~v~~~~~d~~~~---~-~~~~D~v~ 253 (374)
T 1qzz_A 181 SAVRHVLDVGGGNGGMLAAIALRAPHLRGTLVEL-A--GPAERARRRFADAGLADRVTVAEGDFFKP---L-PVTADVVL 253 (374)
T ss_dssp TTCCEEEEETCTTSHHHHHHHHHCTTCEEEEEEC-H--HHHHHHHHHHHHTTCTTTEEEEECCTTSC---C-SCCEEEEE
T ss_pred CCCCEEEEECCCcCHHHHHHHHHCCCCEEEEEeC-H--HHHHHHHHHHHhcCCCCceEEEeCCCCCc---C-CCCCCEEE
Confidence 35689999999999999999987 459999999 5 599999999988776 478887776542 1 23599999
Q ss_pred EcCCcCCCccH--HHHHHHHHHHhhcCCCeEEEEEee----cc----------------------CchhHHHHHHHHcCC
Q 026274 145 GADVFYDASAF--DDLFATITYLLQSSPGSVFITTYH----NR----------------------SGHHLIEFLMVKWGL 196 (241)
Q Consensus 145 ~~dvly~~~~~--~~ll~~~~~lL~~~~~~~~~~~~~----~r----------------------~~~~~~~~~~~~~g~ 196 (241)
++.++++.++. ..+++.+.++|+ |||.+++... .. .+......++++.||
T Consensus 254 ~~~vl~~~~~~~~~~~l~~~~~~L~--pgG~l~i~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~aGf 331 (374)
T 1qzz_A 254 LSFVLLNWSDEDALTILRGCVRALE--PGGRLLVLDRADVEGDGADRFFSTLLDLRMLTFMGGRVRTRDEVVDLAGSAGL 331 (374)
T ss_dssp EESCGGGSCHHHHHHHHHHHHHHEE--EEEEEEEEECCH-------HHHHHHHHHHHHHHHSCCCCCHHHHHHHHHTTTE
T ss_pred EeccccCCCHHHHHHHHHHHHHhcC--CCcEEEEEechhhcCCCCCcchhhhcchHHHHhCCCcCCCHHHHHHHHHHCCC
Confidence 99999887665 489999999998 5565444322 11 122334456788999
Q ss_pred EEEEEe
Q 026274 197 KCVKLV 202 (241)
Q Consensus 197 ~~~~i~ 202 (241)
+...+.
T Consensus 332 ~~~~~~ 337 (374)
T 1qzz_A 332 ALASER 337 (374)
T ss_dssp EEEEEE
T ss_pred ceEEEE
Confidence 988774
|
| >3id6_C Fibrillarin-like rRNA/TRNA 2'-O-methyltransferase; C/D guide RNA, 2'-O-methylation, coiled-coil, methyltransfer binding, rRNA processing; HET: SAM; 2.60A {Sulfolobus solfataricus} SCOP: c.66.1.0 PDB: 3id5_B* 3pla_E* | Back alignment and structure |
|---|
Probab=99.30 E-value=1.4e-10 Score=97.02 Aligned_cols=148 Identities=12% Similarity=0.053 Sum_probs=91.3
Q ss_pred eEEeccHH-HHHHHHHhcc---CCCCCCeEEEecCCCCHHHHHHHHh-C--CEEEEEcCCCcHHHHHHHHHHHHHcCCce
Q 026274 49 LFVWPCSV-ILAEYVWQQR---YRFSGANVVELGAGTSLPGLVAAKV-G--SNVTLTDDSNRIEVLKNMRRVCEMNKLNC 121 (241)
Q Consensus 49 ~~~W~~s~-~L~~~l~~~~---~~~~~~~VLElGcGtGl~sl~la~~-g--~~V~~tD~~~~~~~l~~~~~n~~~n~~~~ 121 (241)
.+.|..-. .++..+.... ...+|.+|||+|||+|..+..+|+. | .+|+++|+++ .+++.+.+.++.. .++
T Consensus 51 yr~w~~~~skla~~ll~~l~~~~l~~g~~VLDlG~GtG~~t~~la~~v~~~G~V~avD~s~--~~l~~l~~~a~~r-~nv 127 (232)
T 3id6_C 51 YREWNAFRSKLAGAILKGLKTNPIRKGTKVLYLGAASGTTISHVSDIIELNGKAYGVEFSP--RVVRELLLVAQRR-PNI 127 (232)
T ss_dssp EEECCTTTCHHHHHHHTTCSCCSCCTTCEEEEETCTTSHHHHHHHHHHTTTSEEEEEECCH--HHHHHHHHHHHHC-TTE
T ss_pred hhhhchHHHHHHHHHHhhhhhcCCCCCCEEEEEeecCCHHHHHHHHHhCCCCEEEEEECcH--HHHHHHHHHhhhc-CCe
Confidence 34453322 3455554432 3557899999999999999999885 3 3999999995 5776665544432 456
Q ss_pred EEEEeecCCCCc-CcCCCCCcEEEEcCCcCCCccHHHHHHHHHHHhhcCCCeEEEEEeeccC---------chhHHHHHH
Q 026274 122 RVMGLTWGFLDA-SIFDLNPNIILGADVFYDASAFDDLFATITYLLQSSPGSVFITTYHNRS---------GHHLIEFLM 191 (241)
Q Consensus 122 ~~~~l~w~~~~~-~~~~~~fDlIl~~dvly~~~~~~~ll~~~~~lL~~~~~~~~~~~~~~r~---------~~~~~~~~~ 191 (241)
.+...|...... .....+||+|++.-.. +...+.+...+.++|+ |||.+++....+. ........+
T Consensus 128 ~~i~~Da~~~~~~~~~~~~~D~I~~d~a~--~~~~~il~~~~~~~Lk--pGG~lvisik~~~~d~t~~~~e~~~~~~~~L 203 (232)
T 3id6_C 128 FPLLADARFPQSYKSVVENVDVLYVDIAQ--PDQTDIAIYNAKFFLK--VNGDMLLVIKARSIDVTKDPKEIYKTEVEKL 203 (232)
T ss_dssp EEEECCTTCGGGTTTTCCCEEEEEECCCC--TTHHHHHHHHHHHHEE--EEEEEEEEEC-------CCSSSSTTHHHHHH
T ss_pred EEEEcccccchhhhccccceEEEEecCCC--hhHHHHHHHHHHHhCC--CCeEEEEEEccCCcccCCCHHHHHHHHHHHH
Confidence 666666543321 1224589999976332 3344445566777998 6676665532222 123334456
Q ss_pred HHcCCEEEEEec
Q 026274 192 VKWGLKCVKLVD 203 (241)
Q Consensus 192 ~~~g~~~~~i~~ 203 (241)
++.||+.....+
T Consensus 204 ~~~gf~~~~~~~ 215 (232)
T 3id6_C 204 ENSNFETIQIIN 215 (232)
T ss_dssp HHTTEEEEEEEE
T ss_pred HHCCCEEEEEec
Confidence 678999888743
|
| >2yxe_A Protein-L-isoaspartate O-methyltransferase; rossman-type fold, alpha/beta/alpha sandwich structure, STRU genomics, NPPSFA; 2.00A {Methanocaldococcus jannaschii} | Back alignment and structure |
|---|
Probab=99.29 E-value=2.3e-11 Score=99.35 Aligned_cols=119 Identities=13% Similarity=0.014 Sum_probs=86.5
Q ss_pred EEeccHHHHHHHHHhccCCCCCCeEEEecCCCCHHHHHHHHhC---CEEEEEcCCCcHHHHHHHHHHHHHcCC-ceEEEE
Q 026274 50 FVWPCSVILAEYVWQQRYRFSGANVVELGAGTSLPGLVAAKVG---SNVTLTDDSNRIEVLKNMRRVCEMNKL-NCRVMG 125 (241)
Q Consensus 50 ~~W~~s~~L~~~l~~~~~~~~~~~VLElGcGtGl~sl~la~~g---~~V~~tD~~~~~~~l~~~~~n~~~n~~-~~~~~~ 125 (241)
..|......... .......++.+|||+|||+|..+..+++.+ .+|+++|+++ ++++.+++++..++. ++.+..
T Consensus 58 ~~~~~~~~~~~~-~~~~~~~~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~vD~~~--~~~~~a~~~~~~~~~~~v~~~~ 134 (215)
T 2yxe_A 58 QTISAIHMVGMM-CELLDLKPGMKVLEIGTGCGYHAAVTAEIVGEDGLVVSIERIP--ELAEKAERTLRKLGYDNVIVIV 134 (215)
T ss_dssp EEECCHHHHHHH-HHHTTCCTTCEEEEECCTTSHHHHHHHHHHCTTSEEEEEESCH--HHHHHHHHHHHHHTCTTEEEEE
T ss_pred cEeCcHHHHHHH-HHhhCCCCCCEEEEECCCccHHHHHHHHHhCCCCEEEEEeCCH--HHHHHHHHHHHHcCCCCeEEEE
Confidence 345554444443 333345577899999999999999999875 6999999995 799999999887765 466666
Q ss_pred eecCCCCcCcCCCCCcEEEEcCCcCCCccHHHHHHHHHHHhhcCCCeEEEEEeecc
Q 026274 126 LTWGFLDASIFDLNPNIILGADVFYDASAFDDLFATITYLLQSSPGSVFITTYHNR 181 (241)
Q Consensus 126 l~w~~~~~~~~~~~fDlIl~~dvly~~~~~~~ll~~~~~lL~~~~~~~~~~~~~~r 181 (241)
.+...... ...+||+|+++.++++.. +.+.++|+ +||.+++.....
T Consensus 135 ~d~~~~~~--~~~~fD~v~~~~~~~~~~------~~~~~~L~--pgG~lv~~~~~~ 180 (215)
T 2yxe_A 135 GDGTLGYE--PLAPYDRIYTTAAGPKIP------EPLIRQLK--DGGKLLMPVGRY 180 (215)
T ss_dssp SCGGGCCG--GGCCEEEEEESSBBSSCC------HHHHHTEE--EEEEEEEEESSS
T ss_pred CCcccCCC--CCCCeeEEEECCchHHHH------HHHHHHcC--CCcEEEEEECCC
Confidence 66532211 145899999999998755 47788998 677777765543
|
| >1x19_A CRTF-related protein; methyltransferase, bacteriochllochlorophyll, BCHU, SAM, SAH, adenosylmethyonine, S-adenosylhomocysteine, ADO-Met; 2.27A {Chlorobium tepidum} PDB: 1x1a_A* 1x1b_A* 1x1c_A* 1x1d_A* | Back alignment and structure |
|---|
Probab=99.29 E-value=8.7e-11 Score=103.78 Aligned_cols=126 Identities=12% Similarity=0.084 Sum_probs=93.9
Q ss_pred CCCCCeEEEecCCCCHHHHHHHHh--CCEEEEEcCCCcHHHHHHHHHHHHHcCC--ceEEEEeecCCCCcCcCCCCCcEE
Q 026274 68 RFSGANVVELGAGTSLPGLVAAKV--GSNVTLTDDSNRIEVLKNMRRVCEMNKL--NCRVMGLTWGFLDASIFDLNPNII 143 (241)
Q Consensus 68 ~~~~~~VLElGcGtGl~sl~la~~--g~~V~~tD~~~~~~~l~~~~~n~~~n~~--~~~~~~l~w~~~~~~~~~~~fDlI 143 (241)
..++.+|||+|||+|..+..+++. +.+++++|+ + .+++.+++++..++. ++++...|+.+. +. + .+|+|
T Consensus 188 ~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~--~~~~~a~~~~~~~~~~~~v~~~~~d~~~~--~~-~-~~D~v 260 (359)
T 1x19_A 188 LDGVKKMIDVGGGIGDISAAMLKHFPELDSTILNL-P--GAIDLVNENAAEKGVADRMRGIAVDIYKE--SY-P-EADAV 260 (359)
T ss_dssp CTTCCEEEEESCTTCHHHHHHHHHCTTCEEEEEEC-G--GGHHHHHHHHHHTTCTTTEEEEECCTTTS--CC-C-CCSEE
T ss_pred CCCCCEEEEECCcccHHHHHHHHHCCCCeEEEEec-H--HHHHHHHHHHHhcCCCCCEEEEeCccccC--CC-C-CCCEE
Confidence 346789999999999999999987 459999999 6 499999999988765 377777776653 21 2 34999
Q ss_pred EEcCCcCCCcc--HHHHHHHHHHHhhcCCCeEE-EEEeec--------------------c------CchhHHHHHHHHc
Q 026274 144 LGADVFYDASA--FDDLFATITYLLQSSPGSVF-ITTYHN--------------------R------SGHHLIEFLMVKW 194 (241)
Q Consensus 144 l~~dvly~~~~--~~~ll~~~~~lL~~~~~~~~-~~~~~~--------------------r------~~~~~~~~~~~~~ 194 (241)
+++.++++.++ ...+++.+.++|+ |||.+ ++.... . .+......++++.
T Consensus 261 ~~~~vlh~~~d~~~~~~l~~~~~~L~--pgG~l~i~e~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~t~~e~~~ll~~a 338 (359)
T 1x19_A 261 LFCRILYSANEQLSTIMCKKAFDAMR--SGGRLLILDMVIDDPENPNFDYLSHYILGAGMPFSVLGFKEQARYKEILESL 338 (359)
T ss_dssp EEESCGGGSCHHHHHHHHHHHHTTCC--TTCEEEEEEECCCCTTSCCHHHHHHHGGGGGSSCCCCCCCCGGGHHHHHHHH
T ss_pred EEechhccCCHHHHHHHHHHHHHhcC--CCCEEEEEecccCCCCCchHHHHHHHHHhcCCCCcccCCCCHHHHHHHHHHC
Confidence 99999988766 7889999999998 45554 443211 0 2333455567788
Q ss_pred CCEEEEEe
Q 026274 195 GLKCVKLV 202 (241)
Q Consensus 195 g~~~~~i~ 202 (241)
||+...+.
T Consensus 339 Gf~~v~~~ 346 (359)
T 1x19_A 339 GYKDVTMV 346 (359)
T ss_dssp TCEEEEEE
T ss_pred CCceEEEE
Confidence 88877763
|
| >3k6r_A Putative transferase PH0793; structural genomics, PSI structure initiative, midwest center for structural genomic unknown function; 2.10A {Pyrococcus horikoshii} PDB: 3a25_A* 3a26_A* | Back alignment and structure |
|---|
Probab=99.28 E-value=4.5e-11 Score=102.56 Aligned_cols=122 Identities=16% Similarity=0.129 Sum_probs=87.8
Q ss_pred CCCCeEEEecCCCCHHHHHHHHhCC-EEEEEcCCCcHHHHHHHHHHHHHcCCc--eEEEEeecCCCCcCcCCCCCcEEEE
Q 026274 69 FSGANVVELGAGTSLPGLVAAKVGS-NVTLTDDSNRIEVLKNMRRVCEMNKLN--CRVMGLTWGFLDASIFDLNPNIILG 145 (241)
Q Consensus 69 ~~~~~VLElGcGtGl~sl~la~~g~-~V~~tD~~~~~~~l~~~~~n~~~n~~~--~~~~~l~w~~~~~~~~~~~fDlIl~ 145 (241)
.+|.+|||+|||+|.+++.+|+.|+ +|+++|+++ .+++.+++|++.|++. +.+...|..+.. ....||.|++
T Consensus 124 ~~g~~VlD~~aG~G~~~i~~a~~g~~~V~avD~np--~a~~~~~~N~~~N~v~~~v~~~~~D~~~~~---~~~~~D~Vi~ 198 (278)
T 3k6r_A 124 KPDELVVDMFAGIGHLSLPIAVYGKAKVIAIEKDP--YTFKFLVENIHLNKVEDRMSAYNMDNRDFP---GENIADRILM 198 (278)
T ss_dssp CTTCEEEETTCTTTTTTHHHHHHTCCEEEEECCCH--HHHHHHHHHHHHTTCTTTEEEECSCTTTCC---CCSCEEEEEE
T ss_pred CCCCEEEEecCcCcHHHHHHHHhcCCeEEEEECCH--HHHHHHHHHHHHcCCCCcEEEEeCcHHHhc---cccCCCEEEE
Confidence 3688999999999999999999986 899999995 7999999999999985 566655554432 2358999998
Q ss_pred cCCcCCCccHHHHHHHHHHHhhcCCCeEEEE-Eeec-----cCchhHHHHHHHHcCCEEEEE
Q 026274 146 ADVFYDASAFDDLFATITYLLQSSPGSVFIT-TYHN-----RSGHHLIEFLMVKWGLKCVKL 201 (241)
Q Consensus 146 ~dvly~~~~~~~ll~~~~~lL~~~~~~~~~~-~~~~-----r~~~~~~~~~~~~~g~~~~~i 201 (241)
..+.+. ..+++...++|+ +||++.+ +... ......+..+++..|+++..+
T Consensus 199 ~~p~~~----~~~l~~a~~~lk--~gG~ih~~~~~~e~~~~~~~~e~i~~~~~~~g~~v~~~ 254 (278)
T 3k6r_A 199 GYVVRT----HEFIPKALSIAK--DGAIIHYHNTVPEKLMPREPFETFKRITKEYGYDVEKL 254 (278)
T ss_dssp CCCSSG----GGGHHHHHHHEE--EEEEEEEEEEEEGGGTTTTTHHHHHHHHHHTTCEEEEE
T ss_pred CCCCcH----HHHHHHHHHHcC--CCCEEEEEeeecccccchhHHHHHHHHHHHcCCcEEEE
Confidence 766443 345666667887 4565432 2111 112234555678899988665
|
| >1ixk_A Methyltransferase; open beta sheet; 1.90A {Pyrococcus horikoshii} SCOP: c.66.1.38 | Back alignment and structure |
|---|
Probab=99.28 E-value=4.1e-11 Score=104.52 Aligned_cols=139 Identities=12% Similarity=0.111 Sum_probs=95.0
Q ss_pred ccHHHHHHHHHhccCCCCCCeEEEecCCCCHHHHHHHHh---CCEEEEEcCCCcHHHHHHHHHHHHHcCC-ceEEEEeec
Q 026274 53 PCSVILAEYVWQQRYRFSGANVVELGAGTSLPGLVAAKV---GSNVTLTDDSNRIEVLKNMRRVCEMNKL-NCRVMGLTW 128 (241)
Q Consensus 53 ~~s~~L~~~l~~~~~~~~~~~VLElGcGtGl~sl~la~~---g~~V~~tD~~~~~~~l~~~~~n~~~n~~-~~~~~~l~w 128 (241)
.++.+++..+. ..++.+|||+|||+|..++.+++. +.+|+++|+++ .+++.+++|++.++. ++.+...|.
T Consensus 105 ~~s~l~~~~l~----~~~g~~VLDlg~G~G~~t~~la~~~~~~~~v~avD~s~--~~l~~a~~~~~~~g~~~v~~~~~D~ 178 (315)
T 1ixk_A 105 ASSMYPPVALD----PKPGEIVADMAAAPGGKTSYLAQLMRNDGVIYAFDVDE--NRLRETRLNLSRLGVLNVILFHSSS 178 (315)
T ss_dssp HHHHHHHHHHC----CCTTCEEEECCSSCSHHHHHHHHHTTTCSEEEEECSCH--HHHHHHHHHHHHHTCCSEEEESSCG
T ss_pred HHHHHHHHHhC----CCCCCEEEEeCCCCCHHHHHHHHHhCCCCEEEEEcCCH--HHHHHHHHHHHHhCCCeEEEEECCh
Confidence 34444455442 346789999999999999999986 25899999995 699999999998887 566666655
Q ss_pred CCCCcCcCCCCCcEEEEcCC------cCCCcc----------------HHHHHHHHHHHhhcCCCeEEEEEe---eccCc
Q 026274 129 GFLDASIFDLNPNIILGADV------FYDASA----------------FDDLFATITYLLQSSPGSVFITTY---HNRSG 183 (241)
Q Consensus 129 ~~~~~~~~~~~fDlIl~~dv------ly~~~~----------------~~~ll~~~~~lL~~~~~~~~~~~~---~~r~~ 183 (241)
.+... .+.+||+|++..+ +...++ ...+++.+.++|+ +||.++++. .....
T Consensus 179 ~~~~~--~~~~fD~Il~d~Pcsg~g~~~~~p~~~~~~~~~~~~~~~~~q~~~L~~~~~~Lk--pGG~lv~stcs~~~~En 254 (315)
T 1ixk_A 179 LHIGE--LNVEFDKILLDAPCTGSGTIHKNPERKWNRTMDDIKFCQGLQMRLLEKGLEVLK--PGGILVYSTCSLEPEEN 254 (315)
T ss_dssp GGGGG--GCCCEEEEEEECCTTSTTTCC--------CCHHHHHHHHHHHHHHHHHHHHHEE--EEEEEEEEESCCCGGGT
T ss_pred hhccc--ccccCCEEEEeCCCCCcccccCChhHhhcCCHHHHHHHHHHHHHHHHHHHHhCC--CCCEEEEEeCCCChHHh
Confidence 44321 3458999997433 221111 2588899999998 566555532 22333
Q ss_pred hhHHHHHHHHcCCEEEEE
Q 026274 184 HHLIEFLMVKWGLKCVKL 201 (241)
Q Consensus 184 ~~~~~~~~~~~g~~~~~i 201 (241)
...+..+++++||+...+
T Consensus 255 e~~v~~~l~~~~~~~~~~ 272 (315)
T 1ixk_A 255 EFVIQWALDNFDVELLPL 272 (315)
T ss_dssp HHHHHHHHHHSSEEEECC
T ss_pred HHHHHHHHhcCCCEEecC
Confidence 445666777889877655
|
| >3i53_A O-methyltransferase; CO-complex, rossmann-like fold; HET: SAH; 2.08A {Streptomyces carzinostaticus subsp} PDB: 3i58_A* 3i5u_A* 3i64_A* | Back alignment and structure |
|---|
Probab=99.27 E-value=1.1e-10 Score=101.85 Aligned_cols=124 Identities=13% Similarity=-0.007 Sum_probs=93.0
Q ss_pred CCCeEEEecCCCCHHHHHHHHh--CCEEEEEcCCCcHHHHHHHHHHHHHcCC--ceEEEEeecCCCCcCcCCCCCcEEEE
Q 026274 70 SGANVVELGAGTSLPGLVAAKV--GSNVTLTDDSNRIEVLKNMRRVCEMNKL--NCRVMGLTWGFLDASIFDLNPNIILG 145 (241)
Q Consensus 70 ~~~~VLElGcGtGl~sl~la~~--g~~V~~tD~~~~~~~l~~~~~n~~~n~~--~~~~~~l~w~~~~~~~~~~~fDlIl~ 145 (241)
...+|||+|||+|..+..+++. +.+++++|+ + ++++.+++++...++ ++++...|..+ +... +||+|++
T Consensus 169 ~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~--~~~~~a~~~~~~~~~~~~v~~~~~d~~~---~~p~-~~D~v~~ 241 (332)
T 3i53_A 169 ALGHVVDVGGGSGGLLSALLTAHEDLSGTVLDL-Q--GPASAAHRRFLDTGLSGRAQVVVGSFFD---PLPA-GAGGYVL 241 (332)
T ss_dssp GGSEEEEETCTTSHHHHHHHHHCTTCEEEEEEC-H--HHHHHHHHHHHHTTCTTTEEEEECCTTS---CCCC-SCSEEEE
T ss_pred CCCEEEEeCCChhHHHHHHHHHCCCCeEEEecC-H--HHHHHHHHhhhhcCcCcCeEEecCCCCC---CCCC-CCcEEEE
Confidence 4579999999999999999886 448999999 5 699999999887765 57888877653 2222 7999999
Q ss_pred cCCcCCCcc--HHHHHHHHHHHhhcCCCeEEEEEeec---------------------cCchhHHHHHHHHcCCEEEEEe
Q 026274 146 ADVFYDASA--FDDLFATITYLLQSSPGSVFITTYHN---------------------RSGHHLIEFLMVKWGLKCVKLV 202 (241)
Q Consensus 146 ~dvly~~~~--~~~ll~~~~~lL~~~~~~~~~~~~~~---------------------r~~~~~~~~~~~~~g~~~~~i~ 202 (241)
..++++.++ ...+++.+.++|+ |||.+++.... ..+......++++.||+...+.
T Consensus 242 ~~vlh~~~~~~~~~~l~~~~~~L~--pgG~l~i~e~~~~~~~~~~~~d~~~~~~~~~~~~t~~e~~~ll~~aGf~~~~~~ 319 (332)
T 3i53_A 242 SAVLHDWDDLSAVAILRRCAEAAG--SGGVVLVIEAVAGDEHAGTGMDLRMLTYFGGKERSLAELGELAAQAGLAVRAAH 319 (332)
T ss_dssp ESCGGGSCHHHHHHHHHHHHHHHT--TTCEEEEEECCCC---CCHHHHHHHHHHHSCCCCCHHHHHHHHHHTTEEEEEEE
T ss_pred ehhhccCCHHHHHHHHHHHHHhcC--CCCEEEEEeecCCCCCccHHHHHHHHhhCCCCCCCHHHHHHHHHHCCCEEEEEE
Confidence 999988766 4899999999998 45555443211 1122334556788899888774
|
| >1dl5_A Protein-L-isoaspartate O-methyltransferase; isoaspartyl residues, protein repair, deamidation, post-translational modification; HET: SAH; 1.80A {Thermotoga maritima} SCOP: c.66.1.7 d.197.1.1 | Back alignment and structure |
|---|
Probab=99.27 E-value=3.3e-11 Score=104.99 Aligned_cols=111 Identities=17% Similarity=0.058 Sum_probs=84.3
Q ss_pred HHHHHHHhccCCCCCCeEEEecCCCCHHHHHHHHhCC---EEEEEcCCCcHHHHHHHHHHHHHcCC-ceEEEEeecCCCC
Q 026274 57 ILAEYVWQQRYRFSGANVVELGAGTSLPGLVAAKVGS---NVTLTDDSNRIEVLKNMRRVCEMNKL-NCRVMGLTWGFLD 132 (241)
Q Consensus 57 ~L~~~l~~~~~~~~~~~VLElGcGtGl~sl~la~~g~---~V~~tD~~~~~~~l~~~~~n~~~n~~-~~~~~~l~w~~~~ 132 (241)
.+...+.......++.+|||+|||+|..++.+++.+. +|+++|+++ ++++.+++++..++. ++++...|+.+..
T Consensus 62 ~~~~~l~~~l~~~~~~~VLDiGcG~G~~~~~la~~~~~~~~v~gvD~s~--~~~~~a~~~~~~~g~~~v~~~~~d~~~~~ 139 (317)
T 1dl5_A 62 SLMALFMEWVGLDKGMRVLEIGGGTGYNAAVMSRVVGEKGLVVSVEYSR--KICEIAKRNVERLGIENVIFVCGDGYYGV 139 (317)
T ss_dssp HHHHHHHHHTTCCTTCEEEEECCTTSHHHHHHHHHHCTTCEEEEEESCH--HHHHHHHHHHHHTTCCSEEEEESCGGGCC
T ss_pred HHHHHHHHhcCCCCcCEEEEecCCchHHHHHHHHhcCCCCEEEEEECCH--HHHHHHHHHHHHcCCCCeEEEECChhhcc
Confidence 3444444444455788999999999999999998755 499999995 799999999988875 4777777665432
Q ss_pred cCcCCCCCcEEEEcCCcCCCccHHHHHHHHHHHhhcCCCeEEEEEee
Q 026274 133 ASIFDLNPNIILGADVFYDASAFDDLFATITYLLQSSPGSVFITTYH 179 (241)
Q Consensus 133 ~~~~~~~fDlIl~~dvly~~~~~~~ll~~~~~lL~~~~~~~~~~~~~ 179 (241)
. ...+||+|++..++.+.. +.+.++|+ |||.+++...
T Consensus 140 ~--~~~~fD~Iv~~~~~~~~~------~~~~~~Lk--pgG~lvi~~~ 176 (317)
T 1dl5_A 140 P--EFSPYDVIFVTVGVDEVP------ETWFTQLK--EGGRVIVPIN 176 (317)
T ss_dssp G--GGCCEEEEEECSBBSCCC------HHHHHHEE--EEEEEEEEBC
T ss_pred c--cCCCeEEEEEcCCHHHHH------HHHHHhcC--CCcEEEEEEC
Confidence 1 235899999999998765 56788998 6777777643
|
| >3opn_A Putative hemolysin; structural genomics, PSI-2, protein structure initiative, NE SGX research center for structural genomics, nysgxrc; 2.05A {Lactococcus lactis subsp} | Back alignment and structure |
|---|
Probab=99.27 E-value=3.2e-11 Score=100.83 Aligned_cols=141 Identities=16% Similarity=0.132 Sum_probs=87.9
Q ss_pred EeccHHHHHHHHHhccCCCCCCeEEEecCCCCHHHHHHHHhCC-EEEEEcCCCcHHHHHHHHHHHHHcCCceEEEE-eec
Q 026274 51 VWPCSVILAEYVWQQRYRFSGANVVELGAGTSLPGLVAAKVGS-NVTLTDDSNRIEVLKNMRRVCEMNKLNCRVMG-LTW 128 (241)
Q Consensus 51 ~W~~s~~L~~~l~~~~~~~~~~~VLElGcGtGl~sl~la~~g~-~V~~tD~~~~~~~l~~~~~n~~~n~~~~~~~~-l~w 128 (241)
+-.++..|.+.|.......++++|||||||||.++..+++.|+ +|+++|+++ +|++.++++... +.... .+.
T Consensus 18 vsrg~~kL~~~L~~~~~~~~g~~VLDiGcGtG~~t~~la~~g~~~V~gvDis~--~ml~~a~~~~~~----~~~~~~~~~ 91 (232)
T 3opn_A 18 VSRGGLKLEKALKEFHLEINGKTCLDIGSSTGGFTDVMLQNGAKLVYALDVGT--NQLAWKIRSDER----VVVMEQFNF 91 (232)
T ss_dssp SSTTHHHHHHHHHHTTCCCTTCEEEEETCTTSHHHHHHHHTTCSEEEEECSSC--CCCCHHHHTCTT----EEEECSCCG
T ss_pred cCCcHHHHHHHHHHcCCCCCCCEEEEEccCCCHHHHHHHhcCCCEEEEEcCCH--HHHHHHHHhCcc----ccccccceE
Confidence 3467778888877766566788999999999999999999986 999999997 488876654321 11100 011
Q ss_pred CCCCcCcCCC-CCcEEEEcCCcCCCccHHHHHHHHHHHhhcCCCeEEEEEeec---------------cC------chhH
Q 026274 129 GFLDASIFDL-NPNIILGADVFYDASAFDDLFATITYLLQSSPGSVFITTYHN---------------RS------GHHL 186 (241)
Q Consensus 129 ~~~~~~~~~~-~fDlIl~~dvly~~~~~~~ll~~~~~lL~~~~~~~~~~~~~~---------------r~------~~~~ 186 (241)
.......... .||.+. .|+++. .+..+++.+.++|+ |||.+++...+ |. ....
T Consensus 92 ~~~~~~~~~~~~~d~~~-~D~v~~--~l~~~l~~i~rvLk--pgG~lv~~~~p~~e~~~~~~~~~G~~~d~~~~~~~~~~ 166 (232)
T 3opn_A 92 RNAVLADFEQGRPSFTS-IDVSFI--SLDLILPPLYEILE--KNGEVAALIKPQFEAGREQVGKNGIIRDPKVHQMTIEK 166 (232)
T ss_dssp GGCCGGGCCSCCCSEEE-ECCSSS--CGGGTHHHHHHHSC--TTCEEEEEECHHHHSCHHHHC-CCCCCCHHHHHHHHHH
T ss_pred EEeCHhHcCcCCCCEEE-EEEEhh--hHHHHHHHHHHhcc--CCCEEEEEECcccccCHHHhCcCCeecCcchhHHHHHH
Confidence 1000011111 356554 444443 24789999999998 55555443111 00 1112
Q ss_pred HHHHHHHcCCEEEEEe
Q 026274 187 IEFLMVKWGLKCVKLV 202 (241)
Q Consensus 187 ~~~~~~~~g~~~~~i~ 202 (241)
+..++++.||++..+.
T Consensus 167 l~~~l~~aGf~v~~~~ 182 (232)
T 3opn_A 167 VLKTATQLGFSVKGLT 182 (232)
T ss_dssp HHHHHHHHTEEEEEEE
T ss_pred HHHHHHHCCCEEEEEE
Confidence 3345688999988873
|
| >1wxx_A TT1595, hypothetical protein TTHA1280; thermus thermophillus, methyltransferase, adoMet, structural genomics; 1.80A {Thermus thermophilus} SCOP: b.122.1.9 c.66.1.51 PDB: 1wxw_A 2cww_A* | Back alignment and structure |
|---|
Probab=99.27 E-value=5e-11 Score=106.54 Aligned_cols=128 Identities=15% Similarity=0.061 Sum_probs=90.3
Q ss_pred CCCeEEEecCCCCHHHHHHHHhCCEEEEEcCCCcHHHHHHHHHHHHHcCCc-eEEEEeecCCCCcCc--CCCCCcEEEEc
Q 026274 70 SGANVVELGAGTSLPGLVAAKVGSNVTLTDDSNRIEVLKNMRRVCEMNKLN-CRVMGLTWGFLDASI--FDLNPNIILGA 146 (241)
Q Consensus 70 ~~~~VLElGcGtGl~sl~la~~g~~V~~tD~~~~~~~l~~~~~n~~~n~~~-~~~~~l~w~~~~~~~--~~~~fDlIl~~ 146 (241)
++.+|||+|||+|..++.+|+.+.+|+++|+++ .+++.+++|++.|++. +++...|..+..... ...+||+|++.
T Consensus 209 ~~~~VLDlg~G~G~~~~~la~~~~~v~~vD~s~--~~~~~a~~n~~~n~~~~~~~~~~d~~~~~~~~~~~~~~fD~Ii~d 286 (382)
T 1wxx_A 209 RGERALDVFSYAGGFALHLALGFREVVAVDSSA--EALRRAEENARLNGLGNVRVLEANAFDLLRRLEKEGERFDLVVLD 286 (382)
T ss_dssp CEEEEEEETCTTTHHHHHHHHHEEEEEEEESCH--HHHHHHHHHHHHTTCTTEEEEESCHHHHHHHHHHTTCCEEEEEEC
T ss_pred CCCeEEEeeeccCHHHHHHHHhCCEEEEEECCH--HHHHHHHHHHHHcCCCCceEEECCHHHHHHHHHhcCCCeeEEEEC
Confidence 678999999999999999999866999999995 7999999999999875 777766654432111 14589999986
Q ss_pred CCcCCC---------ccHHHHHHHHHHHhhcCCCeEEEEEeeccC-chhHH----HHHHHHcCCEEEEE
Q 026274 147 DVFYDA---------SAFDDLFATITYLLQSSPGSVFITTYHNRS-GHHLI----EFLMVKWGLKCVKL 201 (241)
Q Consensus 147 dvly~~---------~~~~~ll~~~~~lL~~~~~~~~~~~~~~r~-~~~~~----~~~~~~~g~~~~~i 201 (241)
.+.|.. .....++..+.++|+ |||.++++..... ....+ ...+.+.|.....+
T Consensus 287 pP~~~~~~~~~~~~~~~~~~~l~~~~~~Lk--pgG~l~~~~~~~~~~~~~~~~~i~~~~~~~g~~~~~i 353 (382)
T 1wxx_A 287 PPAFAKGKKDVERAYRAYKEVNLRAIKLLK--EGGILATASCSHHMTEPLFYAMVAEAAQDAHRLLRVV 353 (382)
T ss_dssp CCCSCCSTTSHHHHHHHHHHHHHHHHHTEE--EEEEEEEEECCTTSCHHHHHHHHHHHHHHTTCCEEEE
T ss_pred CCCCCCChhHHHHHHHHHHHHHHHHHHhcC--CCCEEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEE
Confidence 655543 346778888999998 5666665543332 22211 22345666555444
|
| >1sui_A Caffeoyl-COA O-methyltransferase; rossmann fold, protein-cofactor-substrate complex; HET: SAH FRE; 2.70A {Medicago sativa} SCOP: c.66.1.1 PDB: 1sus_A* | Back alignment and structure |
|---|
Probab=99.27 E-value=1.1e-11 Score=104.33 Aligned_cols=102 Identities=13% Similarity=0.023 Sum_probs=79.3
Q ss_pred CCCCeEEEecCCCCHHHHHHHHh---CCEEEEEcCCCcHHHHHHHHHHHHHcCC--ceEEEEeecCCCCcCc-----CCC
Q 026274 69 FSGANVVELGAGTSLPGLVAAKV---GSNVTLTDDSNRIEVLKNMRRVCEMNKL--NCRVMGLTWGFLDASI-----FDL 138 (241)
Q Consensus 69 ~~~~~VLElGcGtGl~sl~la~~---g~~V~~tD~~~~~~~l~~~~~n~~~n~~--~~~~~~l~w~~~~~~~-----~~~ 138 (241)
.++++|||+|||+|..++.+++. +.+|+++|+++ ++++.+++|+...+. ++++...++.+..... ...
T Consensus 78 ~~~~~VLeiG~G~G~~~~~la~~~~~~~~v~~iD~s~--~~~~~a~~~~~~~g~~~~i~~~~gda~~~l~~l~~~~~~~~ 155 (247)
T 1sui_A 78 INAKNTMEIGVYTGYSLLATALAIPEDGKILAMDINK--ENYELGLPVIKKAGVDHKIDFREGPALPVLDEMIKDEKNHG 155 (247)
T ss_dssp TTCCEEEEECCGGGHHHHHHHHHSCTTCEEEEEESCC--HHHHHHHHHHHHTTCGGGEEEEESCHHHHHHHHHHSGGGTT
T ss_pred hCcCEEEEeCCCcCHHHHHHHHhCCCCCEEEEEECCH--HHHHHHHHHHHHcCCCCCeEEEECCHHHHHHHHHhccCCCC
Confidence 45679999999999999999986 67999999997 699999999998887 4666665554321111 146
Q ss_pred CCcEEEEcCCcCCCccHHHHHHHHHHHhhcCCCeEEEEE
Q 026274 139 NPNIILGADVFYDASAFDDLFATITYLLQSSPGSVFITT 177 (241)
Q Consensus 139 ~fDlIl~~dvly~~~~~~~ll~~~~~lL~~~~~~~~~~~ 177 (241)
+||+|++... ......+++.+.++|+ +||++++.
T Consensus 156 ~fD~V~~d~~---~~~~~~~l~~~~~~Lk--pGG~lv~d 189 (247)
T 1sui_A 156 SYDFIFVDAD---KDNYLNYHKRLIDLVK--VGGVIGYD 189 (247)
T ss_dssp CBSEEEECSC---STTHHHHHHHHHHHBC--TTCCEEEE
T ss_pred CEEEEEEcCc---hHHHHHHHHHHHHhCC--CCeEEEEe
Confidence 8999997532 4567889999999998 67777765
|
| >1tw3_A COMT, carminomycin 4-O-methyltransferase; anthracycline, methylate, tailoring enzyme, polyketide, S-adenosyl-L-homocystein; HET: SAH ERT; 2.35A {Streptomyces peucetius} SCOP: a.4.5.29 c.66.1.12 PDB: 1tw2_A* | Back alignment and structure |
|---|
Probab=99.26 E-value=1.3e-10 Score=102.40 Aligned_cols=100 Identities=13% Similarity=0.128 Sum_probs=79.8
Q ss_pred CCCCeEEEecCCCCHHHHHHHHhC--CEEEEEcCCCcHHHHHHHHHHHHHcCC--ceEEEEeecCCCCcCcCCCCCcEEE
Q 026274 69 FSGANVVELGAGTSLPGLVAAKVG--SNVTLTDDSNRIEVLKNMRRVCEMNKL--NCRVMGLTWGFLDASIFDLNPNIIL 144 (241)
Q Consensus 69 ~~~~~VLElGcGtGl~sl~la~~g--~~V~~tD~~~~~~~l~~~~~n~~~n~~--~~~~~~l~w~~~~~~~~~~~fDlIl 144 (241)
.++.+|||+|||+|..+..+++.+ .+++++|+ + ++++.+++++..++. ++++...|+.+. . +..||+|+
T Consensus 182 ~~~~~vLDvG~G~G~~~~~l~~~~~~~~~~~~D~-~--~~~~~a~~~~~~~~~~~~v~~~~~d~~~~---~-~~~~D~v~ 254 (360)
T 1tw3_A 182 TNVRHVLDVGGGKGGFAAAIARRAPHVSATVLEM-A--GTVDTARSYLKDEGLSDRVDVVEGDFFEP---L-PRKADAII 254 (360)
T ss_dssp TTCSEEEEETCTTSHHHHHHHHHCTTCEEEEEEC-T--THHHHHHHHHHHTTCTTTEEEEECCTTSC---C-SSCEEEEE
T ss_pred ccCcEEEEeCCcCcHHHHHHHHhCCCCEEEEecC-H--HHHHHHHHHHHhcCCCCceEEEeCCCCCC---C-CCCccEEE
Confidence 356799999999999999999875 48999998 5 499999999988776 578888777542 1 23599999
Q ss_pred EcCCcCCCccH--HHHHHHHHHHhhcCCCeEEEEE
Q 026274 145 GADVFYDASAF--DDLFATITYLLQSSPGSVFITT 177 (241)
Q Consensus 145 ~~dvly~~~~~--~~ll~~~~~lL~~~~~~~~~~~ 177 (241)
++.++++.++. ..+++.+.++|+ |||.+++.
T Consensus 255 ~~~vl~~~~~~~~~~~l~~~~~~L~--pgG~l~i~ 287 (360)
T 1tw3_A 255 LSFVLLNWPDHDAVRILTRCAEALE--PGGRILIH 287 (360)
T ss_dssp EESCGGGSCHHHHHHHHHHHHHTEE--EEEEEEEE
T ss_pred EcccccCCCHHHHHHHHHHHHHhcC--CCcEEEEE
Confidence 99999876655 589999999998 56655543
|
| >2yx1_A Hypothetical protein MJ0883; methyl transferase, tRNA modification enzyme, transferase; HET: SFG; 2.20A {Methanocaldococcus jannaschii} PDB: 2zzn_A* 3ay0_A* 2zzm_A* | Back alignment and structure |
|---|
Probab=99.25 E-value=4.2e-11 Score=105.31 Aligned_cols=118 Identities=14% Similarity=0.103 Sum_probs=84.1
Q ss_pred CCCCeEEEecCCCCHHHHHHHHhCCEEEEEcCCCcHHHHHHHHHHHHHcCC--ceEEEEeecCCCCcCcCCCCCcEEEEc
Q 026274 69 FSGANVVELGAGTSLPGLVAAKVGSNVTLTDDSNRIEVLKNMRRVCEMNKL--NCRVMGLTWGFLDASIFDLNPNIILGA 146 (241)
Q Consensus 69 ~~~~~VLElGcGtGl~sl~la~~g~~V~~tD~~~~~~~l~~~~~n~~~n~~--~~~~~~l~w~~~~~~~~~~~fDlIl~~ 146 (241)
.++.+|||+|||+|.+++. |+.+.+|+++|+++ .+++.+++|++.|++ ++++...|..+.. .+||+|++.
T Consensus 194 ~~~~~VLDlg~G~G~~~l~-a~~~~~V~~vD~s~--~ai~~a~~n~~~n~l~~~v~~~~~D~~~~~-----~~fD~Vi~d 265 (336)
T 2yx1_A 194 SLNDVVVDMFAGVGPFSIA-CKNAKKIYAIDINP--HAIELLKKNIKLNKLEHKIIPILSDVREVD-----VKGNRVIMN 265 (336)
T ss_dssp CTTCEEEETTCTTSHHHHH-TTTSSEEEEEESCH--HHHHHHHHHHHHTTCTTTEEEEESCGGGCC-----CCEEEEEEC
T ss_pred CCCCEEEEccCccCHHHHh-ccCCCEEEEEECCH--HHHHHHHHHHHHcCCCCcEEEEECChHHhc-----CCCcEEEEC
Confidence 3678999999999999999 88555999999995 799999999999987 5777777766542 689999985
Q ss_pred CCcCCCccHHHHHHHHHHHhhcCCCeEEEE-EeeccCchhHHHHHHHHcCCEEEEE
Q 026274 147 DVFYDASAFDDLFATITYLLQSSPGSVFIT-TYHNRSGHHLIEFLMVKWGLKCVKL 201 (241)
Q Consensus 147 dvly~~~~~~~ll~~~~~lL~~~~~~~~~~-~~~~r~~~~~~~~~~~~~g~~~~~i 201 (241)
.+.+ ...+++.+.++|+ ++|.+++ ++... .......+.+..|++...+
T Consensus 266 pP~~----~~~~l~~~~~~L~--~gG~l~~~~~~~~-~~~~~~~l~~~~~~~i~~~ 314 (336)
T 2yx1_A 266 LPKF----AHKFIDKALDIVE--EGGVIHYYTIGKD-FDKAIKLFEKKCDCEVLEK 314 (336)
T ss_dssp CTTT----GGGGHHHHHHHEE--EEEEEEEEEEESS-SHHHHHHHHHHSEEEEEEE
T ss_pred CcHh----HHHHHHHHHHHcC--CCCEEEEEEeecC-chHHHHHHHHhcCCcEEEE
Confidence 4433 2377888889998 5565444 34333 3333333333336665443
|
| >2as0_A Hypothetical protein PH1915; RNA methyltransferase, structural genomics, PSI, protein structure initiative; 1.80A {Pyrococcus horikoshii} SCOP: b.122.1.9 c.66.1.51 | Back alignment and structure |
|---|
Probab=99.25 E-value=1.8e-11 Score=109.78 Aligned_cols=128 Identities=14% Similarity=0.074 Sum_probs=91.1
Q ss_pred CCCeEEEecCCCCHHHHHHHHhCC-EEEEEcCCCcHHHHHHHHHHHHHcCC--ceEEEEeecCCCCcCc--CCCCCcEEE
Q 026274 70 SGANVVELGAGTSLPGLVAAKVGS-NVTLTDDSNRIEVLKNMRRVCEMNKL--NCRVMGLTWGFLDASI--FDLNPNIIL 144 (241)
Q Consensus 70 ~~~~VLElGcGtGl~sl~la~~g~-~V~~tD~~~~~~~l~~~~~n~~~n~~--~~~~~~l~w~~~~~~~--~~~~fDlIl 144 (241)
++++|||+|||+|..++.+|+.|+ +|+++|+++ .+++.+++|+..|++ ++++...|+.+..... ...+||+|+
T Consensus 217 ~~~~VLDl~~G~G~~~~~la~~g~~~v~~vD~s~--~~l~~a~~n~~~n~~~~~v~~~~~d~~~~~~~~~~~~~~fD~Vi 294 (396)
T 2as0_A 217 PGDRVLDVFTYTGGFAIHAAIAGADEVIGIDKSP--RAIETAKENAKLNGVEDRMKFIVGSAFEEMEKLQKKGEKFDIVV 294 (396)
T ss_dssp TTCEEEETTCTTTHHHHHHHHTTCSEEEEEESCH--HHHHHHHHHHHHTTCGGGEEEEESCHHHHHHHHHHTTCCEEEEE
T ss_pred CCCeEEEecCCCCHHHHHHHHCCCCEEEEEeCCH--HHHHHHHHHHHHcCCCccceEEECCHHHHHHHHHhhCCCCCEEE
Confidence 678999999999999999999876 899999995 799999999999998 5777777665432111 145899999
Q ss_pred EcCCcCCC---------ccHHHHHHHHHHHhhcCCCeEEEEE-eeccCchhHHH----HHHHHcCCEEEEE
Q 026274 145 GADVFYDA---------SAFDDLFATITYLLQSSPGSVFITT-YHNRSGHHLIE----FLMVKWGLKCVKL 201 (241)
Q Consensus 145 ~~dvly~~---------~~~~~ll~~~~~lL~~~~~~~~~~~-~~~r~~~~~~~----~~~~~~g~~~~~i 201 (241)
+..+.|.. .....++..+.++|+ |||.+++. +........+. ....+.|.....+
T Consensus 295 ~dpP~~~~~~~~~~~~~~~~~~~l~~~~~~Lk--pgG~lv~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~i 363 (396)
T 2as0_A 295 LDPPAFVQHEKDLKAGLRAYFNVNFAGLNLVK--DGGILVTCSCSQHVDLQMFKDMIIAAGAKAGKFLKML 363 (396)
T ss_dssp ECCCCSCSSGGGHHHHHHHHHHHHHHHHTTEE--EEEEEEEEECCTTSCHHHHHHHHHHHHHHTTEEEEES
T ss_pred ECCCCCCCCHHHHHHHHHHHHHHHHHHHHhcC--CCcEEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEE
Confidence 87666553 446778888889988 56654444 33333322222 2334566666544
|
| >2avd_A Catechol-O-methyltransferase; structural genomics, structural genomics consortium, SGC; HET: SAM; 1.70A {Homo sapiens} SCOP: c.66.1.1 | Back alignment and structure |
|---|
Probab=99.25 E-value=2.6e-11 Score=100.01 Aligned_cols=103 Identities=11% Similarity=0.051 Sum_probs=79.1
Q ss_pred CCCCCeEEEecCCCCHHHHHHHHh---CCEEEEEcCCCcHHHHHHHHHHHHHcCC--ceEEEEeecCCCCcCcC----CC
Q 026274 68 RFSGANVVELGAGTSLPGLVAAKV---GSNVTLTDDSNRIEVLKNMRRVCEMNKL--NCRVMGLTWGFLDASIF----DL 138 (241)
Q Consensus 68 ~~~~~~VLElGcGtGl~sl~la~~---g~~V~~tD~~~~~~~l~~~~~n~~~n~~--~~~~~~l~w~~~~~~~~----~~ 138 (241)
..++++|||+|||+|..++.+++. +.+|+++|+++ ++++.++++++.++. ++++...+..+...... ..
T Consensus 67 ~~~~~~vLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~--~~~~~a~~~~~~~g~~~~i~~~~~d~~~~~~~~~~~~~~~ 144 (229)
T 2avd_A 67 LIQAKKALDLGTFTGYSALALALALPADGRVVTCEVDA--QPPELGRPLWRQAEAEHKIDLRLKPALETLDELLAAGEAG 144 (229)
T ss_dssp HTTCCEEEEECCTTSHHHHHHHTTSCTTCEEEEEESCS--HHHHHHHHHHHHTTCTTTEEEEESCHHHHHHHHHHTTCTT
T ss_pred hcCCCEEEEEcCCccHHHHHHHHhCCCCCEEEEEECCH--HHHHHHHHHHHHCCCCCeEEEEEcCHHHHHHHHHhcCCCC
Confidence 346789999999999999999986 56999999997 699999999988876 56776655533211111 15
Q ss_pred CCcEEEEcCCcCCCccHHHHHHHHHHHhhcCCCeEEEEE
Q 026274 139 NPNIILGADVFYDASAFDDLFATITYLLQSSPGSVFITT 177 (241)
Q Consensus 139 ~fDlIl~~dvly~~~~~~~ll~~~~~lL~~~~~~~~~~~ 177 (241)
+||+|++... ......+++.+.++|+ +||++++.
T Consensus 145 ~~D~v~~d~~---~~~~~~~l~~~~~~L~--pgG~lv~~ 178 (229)
T 2avd_A 145 TFDVAVVDAD---KENCSAYYERCLQLLR--PGGILAVL 178 (229)
T ss_dssp CEEEEEECSC---STTHHHHHHHHHHHEE--EEEEEEEE
T ss_pred CccEEEECCC---HHHHHHHHHHHHHHcC--CCeEEEEE
Confidence 7999998543 4567789999999998 67777775
|
| >3b3j_A Histone-arginine methyltransferase CARM1; protein arginine methyltransferase 4, APO catalytic domain, regulator, mRNA processing; 2.55A {Rattus norvegicus} | Back alignment and structure |
|---|
Probab=99.24 E-value=1.5e-11 Score=113.11 Aligned_cols=110 Identities=15% Similarity=0.243 Sum_probs=83.7
Q ss_pred HHHHHhccCCCCCCeEEEecCCCCHHHHHHHHhCC-EEEEEcCCCcHHHHHHHHHHHHHcCC--ceEEEEeecCCCCcCc
Q 026274 59 AEYVWQQRYRFSGANVVELGAGTSLPGLVAAKVGS-NVTLTDDSNRIEVLKNMRRVCEMNKL--NCRVMGLTWGFLDASI 135 (241)
Q Consensus 59 ~~~l~~~~~~~~~~~VLElGcGtGl~sl~la~~g~-~V~~tD~~~~~~~l~~~~~n~~~n~~--~~~~~~l~w~~~~~~~ 135 (241)
.+.+.......++++|||+|||+|.+++.+++.++ +|+++|++ + +++.+++++..+++ ++++...++.+..
T Consensus 147 ~~~il~~l~~~~~~~VLDiGcGtG~la~~la~~~~~~V~gvD~s--~-~l~~A~~~~~~~gl~~~v~~~~~d~~~~~--- 220 (480)
T 3b3j_A 147 QRAILQNHTDFKDKIVLDVGCGSGILSFFAAQAGARKIYAVEAS--T-MAQHAEVLVKSNNLTDRIVVIPGKVEEVS--- 220 (480)
T ss_dssp HHHHHHTGGGTTTCEEEEESCSTTHHHHHHHHTTCSEEEEEECH--H-HHHHHHHHHHHTTCTTTEEEEESCTTTCC---
T ss_pred HHHHHHhhhhcCCCEEEEecCcccHHHHHHHHcCCCEEEEEEcH--H-HHHHHHHHHHHcCCCCcEEEEECchhhCc---
Confidence 33444444445788999999999999999999876 99999998 3 88999999999886 4788888876532
Q ss_pred CCCCCcEEEEcCCcCCC--ccHHHHHHHHHHHhhcCCCeEEEE
Q 026274 136 FDLNPNIILGADVFYDA--SAFDDLFATITYLLQSSPGSVFIT 176 (241)
Q Consensus 136 ~~~~fDlIl~~dvly~~--~~~~~ll~~~~~lL~~~~~~~~~~ 176 (241)
.+++||+|++..++|+. +.....+..+.++|+ +||.+++
T Consensus 221 ~~~~fD~Ivs~~~~~~~~~e~~~~~l~~~~~~Lk--pgG~li~ 261 (480)
T 3b3j_A 221 LPEQVDIIISEPMGYMLFNERMLESYLHAKKYLK--PSGNMFP 261 (480)
T ss_dssp CSSCEEEEECCCCHHHHTCHHHHHHHHHGGGGEE--EEEEEES
T ss_pred cCCCeEEEEEeCchHhcCcHHHHHHHHHHHHhcC--CCCEEEE
Confidence 23589999998776754 334555667788888 6676663
|
| >2gpy_A O-methyltransferase; structural genomics, PSI, protein structure initiative, NEW research center for structural genomics, nysgxrc; HET: MSE; 1.90A {Bacillus halodurans} | Back alignment and structure |
|---|
Probab=99.24 E-value=1.7e-11 Score=101.63 Aligned_cols=102 Identities=9% Similarity=0.151 Sum_probs=79.7
Q ss_pred CCCCeEEEecCCCCHHHHHHHHh--CCEEEEEcCCCcHHHHHHHHHHHHHcCC--ceEEEEeecCCCCcCcC-CCCCcEE
Q 026274 69 FSGANVVELGAGTSLPGLVAAKV--GSNVTLTDDSNRIEVLKNMRRVCEMNKL--NCRVMGLTWGFLDASIF-DLNPNII 143 (241)
Q Consensus 69 ~~~~~VLElGcGtGl~sl~la~~--g~~V~~tD~~~~~~~l~~~~~n~~~n~~--~~~~~~l~w~~~~~~~~-~~~fDlI 143 (241)
.++.+|||+|||+|..++.+++. +.+|+++|+++ ++++.+++++..++. ++.+...++.+...... +.+||+|
T Consensus 53 ~~~~~vLdiG~G~G~~~~~la~~~~~~~v~~vD~~~--~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~fD~I 130 (233)
T 2gpy_A 53 AAPARILEIGTAIGYSAIRMAQALPEATIVSIERDE--RRYEEAHKHVKALGLESRIELLFGDALQLGEKLELYPLFDVL 130 (233)
T ss_dssp HCCSEEEEECCTTSHHHHHHHHHCTTCEEEEECCCH--HHHHHHHHHHHHTTCTTTEEEECSCGGGSHHHHTTSCCEEEE
T ss_pred cCCCEEEEecCCCcHHHHHHHHHCCCCEEEEEECCH--HHHHHHHHHHHHcCCCCcEEEEECCHHHHHHhcccCCCccEE
Confidence 46679999999999999999997 57999999995 799999999988876 46666666554211111 4589999
Q ss_pred EEcCCcCCCccHHHHHHHHHHHhhcCCCeEEEEE
Q 026274 144 LGADVFYDASAFDDLFATITYLLQSSPGSVFITT 177 (241)
Q Consensus 144 l~~dvly~~~~~~~ll~~~~~lL~~~~~~~~~~~ 177 (241)
++..+. .....+++.+.++|+ +||.+++.
T Consensus 131 ~~~~~~---~~~~~~l~~~~~~L~--pgG~lv~~ 159 (233)
T 2gpy_A 131 FIDAAK---GQYRRFFDMYSPMVR--PGGLILSD 159 (233)
T ss_dssp EEEGGG---SCHHHHHHHHGGGEE--EEEEEEEE
T ss_pred EECCCH---HHHHHHHHHHHHHcC--CCeEEEEE
Confidence 986553 367889999999998 67777775
|
| >2plw_A Ribosomal RNA methyltransferase, putative; malaria, SAM, structural genomics, structural genomics consortium, SGC; HET: SAM; 1.70A {Plasmodium falciparum} | Back alignment and structure |
|---|
Probab=99.24 E-value=3e-10 Score=91.57 Aligned_cols=113 Identities=12% Similarity=0.002 Sum_probs=75.9
Q ss_pred ccHHHHHHHHHhccCCCCCCeEEEecCCCCHHHHHHHHh----CCEEEEEcCCCcHHHHHHHHHHHHHcCCceEEEEeec
Q 026274 53 PCSVILAEYVWQQRYRFSGANVVELGAGTSLPGLVAAKV----GSNVTLTDDSNRIEVLKNMRRVCEMNKLNCRVMGLTW 128 (241)
Q Consensus 53 ~~s~~L~~~l~~~~~~~~~~~VLElGcGtGl~sl~la~~----g~~V~~tD~~~~~~~l~~~~~n~~~n~~~~~~~~l~w 128 (241)
.++..|.+.+.......++.+|||||||+|.++..+++. +.+|+++|+++. . ...++.+...++
T Consensus 5 r~~~kl~~~~~~~~~~~~~~~vLDlGcG~G~~~~~l~~~~~~~~~~v~gvD~s~~---~---------~~~~v~~~~~d~ 72 (201)
T 2plw_A 5 RAAYKLIELDNKYLFLKKNKIILDIGCYPGSWCQVILERTKNYKNKIIGIDKKIM---D---------PIPNVYFIQGEI 72 (201)
T ss_dssp TTHHHHHHHHHHHCCCCTTEEEEEESCTTCHHHHHHHHHTTTSCEEEEEEESSCC---C---------CCTTCEEEECCT
T ss_pred HHHHHHHHHHHHcCCCCCCCEEEEeCCCCCHHHHHHHHHcCCCCceEEEEeCCcc---C---------CCCCceEEEccc
Confidence 356667776655444456789999999999999999986 368999999972 1 112356666666
Q ss_pred CCCCc-----------------------CcCCCCCcEEEEcCCcCCCc----cH-------HHHHHHHHHHhhcCCCeEE
Q 026274 129 GFLDA-----------------------SIFDLNPNIILGADVFYDAS----AF-------DDLFATITYLLQSSPGSVF 174 (241)
Q Consensus 129 ~~~~~-----------------------~~~~~~fDlIl~~dvly~~~----~~-------~~ll~~~~~lL~~~~~~~~ 174 (241)
.+... ...+.+||+|++.-++++.. +. ..+++.+.++|+ |||.+
T Consensus 73 ~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~fD~v~~~~~~~~~g~~~~d~~~~~~~~~~~l~~~~~~Lk--pgG~l 150 (201)
T 2plw_A 73 GKDNMNNIKNINYIDNMNNNSVDYKLKEILQDKKIDIILSDAAVPCIGNKIDDHLNSCELTLSITHFMEQYIN--IGGTY 150 (201)
T ss_dssp TTTSSCCC-----------CHHHHHHHHHHTTCCEEEEEECCCCCCCSCHHHHHHHHHHHHHHHHHHHHHHEE--EEEEE
T ss_pred cchhhhhhccccccccccchhhHHHHHhhcCCCcccEEEeCCCcCCCCCcccCHHHHHHHHHHHHHHHHHHcc--CCCEE
Confidence 55320 02345899999876655431 11 237888999998 56766
Q ss_pred EEEee
Q 026274 175 ITTYH 179 (241)
Q Consensus 175 ~~~~~ 179 (241)
++...
T Consensus 151 v~~~~ 155 (201)
T 2plw_A 151 IVKMY 155 (201)
T ss_dssp EEEEE
T ss_pred EEEEe
Confidence 66443
|
| >1jg1_A PIMT;, protein-L-isoaspartate O-methyltransferase; rossmann methyltransferase, protein repair isomerization; HET: SAH; 1.20A {Pyrococcus furiosus} SCOP: c.66.1.7 PDB: 1jg2_A* 1jg3_A* 1jg4_A* | Back alignment and structure |
|---|
Probab=99.24 E-value=5e-11 Score=99.11 Aligned_cols=114 Identities=13% Similarity=0.113 Sum_probs=83.6
Q ss_pred HHHHHHHHhccCCCCCCeEEEecCCCCHHHHHHHHhC-CEEEEEcCCCcHHHHHHHHHHHHHcCC-ceEEEEeecCCCCc
Q 026274 56 VILAEYVWQQRYRFSGANVVELGAGTSLPGLVAAKVG-SNVTLTDDSNRIEVLKNMRRVCEMNKL-NCRVMGLTWGFLDA 133 (241)
Q Consensus 56 ~~L~~~l~~~~~~~~~~~VLElGcGtGl~sl~la~~g-~~V~~tD~~~~~~~l~~~~~n~~~n~~-~~~~~~l~w~~~~~ 133 (241)
..+...+.......++.+|||+|||+|..+..+++.+ .+|+++|+++ ++++.+++++..++. ++.+...++..
T Consensus 77 ~~~~~~~~~~l~~~~~~~vLdiG~G~G~~~~~la~~~~~~v~~vD~~~--~~~~~a~~~~~~~~~~~v~~~~~d~~~--- 151 (235)
T 1jg1_A 77 PHMVAIMLEIANLKPGMNILEVGTGSGWNAALISEIVKTDVYTIERIP--ELVEFAKRNLERAGVKNVHVILGDGSK--- 151 (235)
T ss_dssp HHHHHHHHHHHTCCTTCCEEEECCTTSHHHHHHHHHHCSCEEEEESCH--HHHHHHHHHHHHTTCCSEEEEESCGGG---
T ss_pred HHHHHHHHHhcCCCCCCEEEEEeCCcCHHHHHHHHHhCCEEEEEeCCH--HHHHHHHHHHHHcCCCCcEEEECCccc---
Confidence 3344444443345577899999999999999999986 7999999995 699999999988775 46666665521
Q ss_pred CcC-CCCCcEEEEcCCcCCCccHHHHHHHHHHHhhcCCCeEEEEEeeccC
Q 026274 134 SIF-DLNPNIILGADVFYDASAFDDLFATITYLLQSSPGSVFITTYHNRS 182 (241)
Q Consensus 134 ~~~-~~~fDlIl~~dvly~~~~~~~ll~~~~~lL~~~~~~~~~~~~~~r~ 182 (241)
+.. ..+||+|+++.++.+.. +.+.++|+ +||.+++......
T Consensus 152 ~~~~~~~fD~Ii~~~~~~~~~------~~~~~~L~--pgG~lvi~~~~~~ 193 (235)
T 1jg1_A 152 GFPPKAPYDVIIVTAGAPKIP------EPLIEQLK--IGGKLIIPVGSYH 193 (235)
T ss_dssp CCGGGCCEEEEEECSBBSSCC------HHHHHTEE--EEEEEEEEECSSS
T ss_pred CCCCCCCccEEEECCcHHHHH------HHHHHhcC--CCcEEEEEEecCC
Confidence 222 23599999998887644 36778888 6787777765543
|
| >3hp7_A Hemolysin, putative; structural genomics, APC64019, PSI-2, protein STR initiative, midwest center for structural genomics, MCSG; HET: MSE; 1.53A {Streptococcus thermophilus} | Back alignment and structure |
|---|
Probab=99.24 E-value=9.3e-11 Score=101.13 Aligned_cols=162 Identities=15% Similarity=0.167 Sum_probs=100.3
Q ss_pred EEeccHHHHHHHHHhccCCCCCCeEEEecCCCCHHHHHHHHhCC-EEEEEcCCCcHHHHHHHHHHHHHcCCceEEE-Eee
Q 026274 50 FVWPCSVILAEYVWQQRYRFSGANVVELGAGTSLPGLVAAKVGS-NVTLTDDSNRIEVLKNMRRVCEMNKLNCRVM-GLT 127 (241)
Q Consensus 50 ~~W~~s~~L~~~l~~~~~~~~~~~VLElGcGtGl~sl~la~~g~-~V~~tD~~~~~~~l~~~~~n~~~n~~~~~~~-~l~ 127 (241)
.+-.+++.|...+........+++|||+|||||.++..+++.|+ +|+++|+++ +||+.+.++ ...+... ..+
T Consensus 65 yvsrg~~Kl~~~l~~~~~~~~g~~vLDiGcGTG~~t~~L~~~ga~~V~aVDvs~--~mL~~a~r~----~~rv~~~~~~n 138 (291)
T 3hp7_A 65 YVSRGGLKLEKALAVFNLSVEDMITIDIGASTGGFTDVMLQNGAKLVYAVDVGT--NQLVWKLRQ----DDRVRSMEQYN 138 (291)
T ss_dssp SSSTTHHHHHHHHHHTTCCCTTCEEEEETCTTSHHHHHHHHTTCSEEEEECSSS--SCSCHHHHT----CTTEEEECSCC
T ss_pred cccchHHHHHHHHHhcCCCccccEEEecCCCccHHHHHHHhCCCCEEEEEECCH--HHHHHHHHh----CcccceecccC
Confidence 34567888888887766666889999999999999999999987 999999997 488763331 2222111 111
Q ss_pred cCCCCc-CcCCCCCcEEEEcCCcCCCccHHHHHHHHHHHhhcCCCeEEEEE----eecc-----------Cc------hh
Q 026274 128 WGFLDA-SIFDLNPNIILGADVFYDASAFDDLFATITYLLQSSPGSVFITT----YHNR-----------SG------HH 185 (241)
Q Consensus 128 w~~~~~-~~~~~~fDlIl~~dvly~~~~~~~ll~~~~~lL~~~~~~~~~~~----~~~r-----------~~------~~ 185 (241)
...... .....+||+|++ |+.++ .+..++..+.++|+ |||.+++. ++.. .. ..
T Consensus 139 i~~l~~~~l~~~~fD~v~~-d~sf~--sl~~vL~e~~rvLk--pGG~lv~lvkPqfe~~~~~~~~~G~vrd~~~~~~~~~ 213 (291)
T 3hp7_A 139 FRYAEPVDFTEGLPSFASI-DVSFI--SLNLILPALAKILV--DGGQVVALVKPQFEAGREQIGKNGIVRESSIHEKVLE 213 (291)
T ss_dssp GGGCCGGGCTTCCCSEEEE-CCSSS--CGGGTHHHHHHHSC--TTCEEEEEECGGGTSCGGGCC-CCCCCCHHHHHHHHH
T ss_pred ceecchhhCCCCCCCEEEE-EeeHh--hHHHHHHHHHHHcC--cCCEEEEEECcccccChhhcCCCCccCCHHHHHHHHH
Confidence 111111 112235999986 55554 56889999999998 45544443 1110 01 11
Q ss_pred HHHHHHHHcCCEEEEEecCCCCCCcccccccCCCeEEEEEEecc
Q 026274 186 LIEFLMVKWGLKCVKLVDGFSFLPHYKARELNGNIQLAEIVLNH 229 (241)
Q Consensus 186 ~~~~~~~~~g~~~~~i~~~~~~~p~~~~~~~~~~~~l~~i~~~~ 229 (241)
.+..++...||.+..+... |. .+-.+++|.+..-++.
T Consensus 214 ~v~~~~~~~Gf~v~~~~~s----pi---~g~~gn~e~l~~~~~~ 250 (291)
T 3hp7_A 214 TVTAFAVDYGFSVKGLDFS----PI---QGGHGNIEFLAHLEKT 250 (291)
T ss_dssp HHHHHHHHTTEEEEEEEEC----SS---CCGGGCCCEEEEEEEC
T ss_pred HHHHHHHHCCCEEEEEEEC----CC---CCCCcCHHHHHHhhhc
Confidence 2233467899998887431 11 1335677766555553
|
| >2vdv_E TRNA (guanine-N(7)-)-methyltransferase; S-adenosyl-L-methionine, phosphorylation, M7G, spout MT, tRNA processing; HET: SAM; 2.30A {Saccharomyces cerevisiae} PDB: 2vdu_E | Back alignment and structure |
|---|
Probab=99.23 E-value=1.4e-10 Score=97.20 Aligned_cols=123 Identities=11% Similarity=0.018 Sum_probs=83.9
Q ss_pred CCCeEEEecCCCCHHHHHHHHhC--CEEEEEcCCCcHHHHHHHHHHHHHc--------CC-ceEEEEeecCCCCcC-cCC
Q 026274 70 SGANVVELGAGTSLPGLVAAKVG--SNVTLTDDSNRIEVLKNMRRVCEMN--------KL-NCRVMGLTWGFLDAS-IFD 137 (241)
Q Consensus 70 ~~~~VLElGcGtGl~sl~la~~g--~~V~~tD~~~~~~~l~~~~~n~~~n--------~~-~~~~~~l~w~~~~~~-~~~ 137 (241)
++.+|||+|||+|..++.+++.+ .+|+++|+++ .+++.+++|+..+ +. ++++...|..+.... ...
T Consensus 49 ~~~~vLDiGcG~G~~~~~la~~~~~~~v~gvD~s~--~~l~~a~~~~~~~~~~~~~~~~~~nv~~~~~D~~~~l~~~~~~ 126 (246)
T 2vdv_E 49 KKVTIADIGCGFGGLMIDLSPAFPEDLILGMEIRV--QVTNYVEDRIIALRNNTASKHGFQNINVLRGNAMKFLPNFFEK 126 (246)
T ss_dssp CCEEEEEETCTTSHHHHHHHHHSTTSEEEEEESCH--HHHHHHHHHHHHHHHTC-CCSTTTTEEEEECCTTSCGGGTSCT
T ss_pred CCCEEEEEcCCCCHHHHHHHHhCCCCCEEEEEcCH--HHHHHHHHHHHHHhhccccccCCCcEEEEeccHHHHHHHhccc
Confidence 56789999999999999999986 3899999995 6999999998876 54 677777776653222 234
Q ss_pred CCCcEEEEcC--CcCCCc------cHHHHHHHHHHHhhcCCCeEEEEEeeccCchhHHHHHHHHcCC
Q 026274 138 LNPNIILGAD--VFYDAS------AFDDLFATITYLLQSSPGSVFITTYHNRSGHHLIEFLMVKWGL 196 (241)
Q Consensus 138 ~~fDlIl~~d--vly~~~------~~~~ll~~~~~lL~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~ 196 (241)
..+|.|+... ..+... ....+++.+.++|+ +||.+++..............+...+.
T Consensus 127 ~~~d~v~~~~p~p~~k~~~~~~r~~~~~~l~~~~~~Lk--pgG~l~~~td~~~~~~~~~~~~~~~~~ 191 (246)
T 2vdv_E 127 GQLSKMFFCFPDPHFKQRKHKARIITNTLLSEYAYVLK--EGGVVYTITDVKDLHEWMVKHLEEHPL 191 (246)
T ss_dssp TCEEEEEEESCCCC------CSSCCCHHHHHHHHHHEE--EEEEEEEEESCHHHHHHHHHHHHHSTT
T ss_pred cccCEEEEECCCcccccchhHHhhccHHHHHHHHHHcC--CCCEEEEEeccHHHHHHHHHHHHhCcC
Confidence 5789887542 211100 11589999999998 677777754443222333333455664
|
| >2ip2_A Probable phenazine-specific methyltransferase; pyocyanin, phenazine-1-carboxy PHZM; 1.80A {Pseudomonas aeruginosa} | Back alignment and structure |
|---|
Probab=99.23 E-value=1.3e-10 Score=101.34 Aligned_cols=97 Identities=12% Similarity=0.062 Sum_probs=76.8
Q ss_pred CeEEEecCCCCHHHHHHHHh--CCEEEEEcCCCcHHHHHHHHHHHHHcCC--ceEEEEeecCCCCcCcCCCCCcEEEEcC
Q 026274 72 ANVVELGAGTSLPGLVAAKV--GSNVTLTDDSNRIEVLKNMRRVCEMNKL--NCRVMGLTWGFLDASIFDLNPNIILGAD 147 (241)
Q Consensus 72 ~~VLElGcGtGl~sl~la~~--g~~V~~tD~~~~~~~l~~~~~n~~~n~~--~~~~~~l~w~~~~~~~~~~~fDlIl~~d 147 (241)
.+|||+|||+|..+..+++. +.+++++|+ + .+++.+++++...+. ++++...|+.+. .+.+||+|++..
T Consensus 169 ~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~--~~~~~a~~~~~~~~~~~~v~~~~~d~~~~----~~~~~D~v~~~~ 241 (334)
T 2ip2_A 169 RSFVDVGGGSGELTKAILQAEPSARGVMLDR-E--GSLGVARDNLSSLLAGERVSLVGGDMLQE----VPSNGDIYLLSR 241 (334)
T ss_dssp CEEEEETCTTCHHHHHHHHHCTTCEEEEEEC-T--TCTHHHHHHTHHHHHTTSEEEEESCTTTC----CCSSCSEEEEES
T ss_pred CEEEEeCCCchHHHHHHHHHCCCCEEEEeCc-H--HHHHHHHHHHhhcCCCCcEEEecCCCCCC----CCCCCCEEEEch
Confidence 89999999999999999987 459999999 6 499999988776543 577777776542 235799999999
Q ss_pred CcCCCccHH--HHHHHHHHHhhcCCCeEEEEE
Q 026274 148 VFYDASAFD--DLFATITYLLQSSPGSVFITT 177 (241)
Q Consensus 148 vly~~~~~~--~ll~~~~~lL~~~~~~~~~~~ 177 (241)
++++.++.. .+++.+.++|+ |||.+++.
T Consensus 242 vl~~~~~~~~~~~l~~~~~~L~--pgG~l~i~ 271 (334)
T 2ip2_A 242 IIGDLDEAASLRLLGNCREAMA--GDGRVVVI 271 (334)
T ss_dssp CGGGCCHHHHHHHHHHHHHHSC--TTCEEEEE
T ss_pred hccCCCHHHHHHHHHHHHHhcC--CCCEEEEE
Confidence 998655444 99999999998 55555444
|
| >2hnk_A SAM-dependent O-methyltransferase; modified rossman fold; HET: SAH; 2.30A {Leptospira interrogans} | Back alignment and structure |
|---|
Probab=99.23 E-value=3.3e-11 Score=100.42 Aligned_cols=104 Identities=17% Similarity=0.164 Sum_probs=79.3
Q ss_pred CCCCCeEEEecCCCCHHHHHHHHh---CCEEEEEcCCCcHHHHHHHHHHHHHcCCc--eEEEEeecCCCCcCc-------
Q 026274 68 RFSGANVVELGAGTSLPGLVAAKV---GSNVTLTDDSNRIEVLKNMRRVCEMNKLN--CRVMGLTWGFLDASI------- 135 (241)
Q Consensus 68 ~~~~~~VLElGcGtGl~sl~la~~---g~~V~~tD~~~~~~~l~~~~~n~~~n~~~--~~~~~l~w~~~~~~~------- 135 (241)
..++++|||+|||+|..++.+++. +.+|+++|+++ ++++.+++++..++.. +++...+..+.....
T Consensus 58 ~~~~~~VLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~--~~~~~a~~~~~~~g~~~~v~~~~~d~~~~~~~~~~~~~~~ 135 (239)
T 2hnk_A 58 ISGAKRIIEIGTFTGYSSLCFASALPEDGKILCCDVSE--EWTNVARKYWKENGLENKIFLKLGSALETLQVLIDSKSAP 135 (239)
T ss_dssp HHTCSEEEEECCTTCHHHHHHHHHSCTTCEEEEEESCH--HHHHHHHHHHHHTTCGGGEEEEESCHHHHHHHHHHCSSCC
T ss_pred hhCcCEEEEEeCCCCHHHHHHHHhCCCCCEEEEEECCH--HHHHHHHHHHHHcCCCCCEEEEECCHHHHHHHHHhhcccc
Confidence 346789999999999999999987 56999999995 7999999999887763 666665543211100
Q ss_pred ------C-C-CCCcEEEEcCCcCCCccHHHHHHHHHHHhhcCCCeEEEEEe
Q 026274 136 ------F-D-LNPNIILGADVFYDASAFDDLFATITYLLQSSPGSVFITTY 178 (241)
Q Consensus 136 ------~-~-~~fDlIl~~dvly~~~~~~~ll~~~~~lL~~~~~~~~~~~~ 178 (241)
. + .+||+|++.. .......+++.+.++|+ +||.+++..
T Consensus 136 ~~~~~f~~~~~~fD~I~~~~---~~~~~~~~l~~~~~~L~--pgG~lv~~~ 181 (239)
T 2hnk_A 136 SWASDFAFGPSSIDLFFLDA---DKENYPNYYPLILKLLK--PGGLLIADN 181 (239)
T ss_dssp GGGTTTCCSTTCEEEEEECS---CGGGHHHHHHHHHHHEE--EEEEEEEEC
T ss_pred cccccccCCCCCcCEEEEeC---CHHHHHHHHHHHHHHcC--CCeEEEEEc
Confidence 1 1 5799999863 35567789999999998 678877764
|
| >3mcz_A O-methyltransferase; adomet_mtases, S-adenosylmethionine-dependent methyltransfer structural genomics, PSI-2; HET: MSE; 1.90A {Burkholderia thailandensis} | Back alignment and structure |
|---|
Probab=99.23 E-value=1.6e-10 Score=101.56 Aligned_cols=101 Identities=11% Similarity=0.086 Sum_probs=80.3
Q ss_pred CCeEEEecCCCCHHHHHHHHh--CCEEEEEcCCCcHHHHHHHHHHHHHcCC--ceEEEEeecCCCCcCcCCCCCcEEEEc
Q 026274 71 GANVVELGAGTSLPGLVAAKV--GSNVTLTDDSNRIEVLKNMRRVCEMNKL--NCRVMGLTWGFLDASIFDLNPNIILGA 146 (241)
Q Consensus 71 ~~~VLElGcGtGl~sl~la~~--g~~V~~tD~~~~~~~l~~~~~n~~~n~~--~~~~~~l~w~~~~~~~~~~~fDlIl~~ 146 (241)
+.+|||+|||+|..+..+++. +.+++++|+ + ++++.+++++...+. ++++...|+.+... ..+.+||+|+++
T Consensus 180 ~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~--~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~-~~~~~~D~v~~~ 255 (352)
T 3mcz_A 180 ARTVIDLAGGHGTYLAQVLRRHPQLTGQIWDL-P--TTRDAARKTIHAHDLGGRVEFFEKNLLDARN-FEGGAADVVMLN 255 (352)
T ss_dssp CCEEEEETCTTCHHHHHHHHHCTTCEEEEEEC-G--GGHHHHHHHHHHTTCGGGEEEEECCTTCGGG-GTTCCEEEEEEE
T ss_pred CCEEEEeCCCcCHHHHHHHHhCCCCeEEEEEC-H--HHHHHHHHHHHhcCCCCceEEEeCCcccCcc-cCCCCccEEEEe
Confidence 789999999999999999987 458999999 4 499999999887776 47777777665321 134579999999
Q ss_pred CCcCCCcc--HHHHHHHHHHHhhcCCCeEEEEE
Q 026274 147 DVFYDASA--FDDLFATITYLLQSSPGSVFITT 177 (241)
Q Consensus 147 dvly~~~~--~~~ll~~~~~lL~~~~~~~~~~~ 177 (241)
.++++.++ ...+++.+.++|+ |||.+++.
T Consensus 256 ~vlh~~~~~~~~~~l~~~~~~L~--pgG~l~i~ 286 (352)
T 3mcz_A 256 DCLHYFDAREAREVIGHAAGLVK--PGGALLIL 286 (352)
T ss_dssp SCGGGSCHHHHHHHHHHHHHTEE--EEEEEEEE
T ss_pred cccccCCHHHHHHHHHHHHHHcC--CCCEEEEE
Confidence 99987664 4899999999998 55655543
|
| >3dp7_A SAM-dependent methyltransferase; structural genomics, protein structure initiative, NEW YORK structural genomix research; 2.33A {Bacteroides vulgatus} | Back alignment and structure |
|---|
Probab=99.23 E-value=1.7e-10 Score=102.28 Aligned_cols=101 Identities=12% Similarity=0.035 Sum_probs=79.1
Q ss_pred CCCeEEEecCCCCHHHHHHHHh--CCEEEEEcCCCcHHHHHHHHHHHHHcCC--ceEEEEeecCCCCcCcCCCCCcEEEE
Q 026274 70 SGANVVELGAGTSLPGLVAAKV--GSNVTLTDDSNRIEVLKNMRRVCEMNKL--NCRVMGLTWGFLDASIFDLNPNIILG 145 (241)
Q Consensus 70 ~~~~VLElGcGtGl~sl~la~~--g~~V~~tD~~~~~~~l~~~~~n~~~n~~--~~~~~~l~w~~~~~~~~~~~fDlIl~ 145 (241)
...+|||||||+|..+..+++. +.+++++|+ + ++++.+++++...+. ++++...|..+...+. +.+||+|++
T Consensus 179 ~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~--~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~-p~~~D~v~~ 254 (363)
T 3dp7_A 179 HPKRLLDIGGNTGKWATQCVQYNKEVEVTIVDL-P--QQLEMMRKQTAGLSGSERIHGHGANLLDRDVPF-PTGFDAVWM 254 (363)
T ss_dssp CCSEEEEESCTTCHHHHHHHHHSTTCEEEEEEC-H--HHHHHHHHHHTTCTTGGGEEEEECCCCSSSCCC-CCCCSEEEE
T ss_pred CCCEEEEeCCCcCHHHHHHHHhCCCCEEEEEeC-H--HHHHHHHHHHHhcCcccceEEEEccccccCCCC-CCCcCEEEE
Confidence 5679999999999999999985 458999998 4 699999999887775 5778877766531122 258999999
Q ss_pred cCCcCCCcc--HHHHHHHHHHHhhcCCCeEEEE
Q 026274 146 ADVFYDASA--FDDLFATITYLLQSSPGSVFIT 176 (241)
Q Consensus 146 ~dvly~~~~--~~~ll~~~~~lL~~~~~~~~~~ 176 (241)
+.++++.++ ...+++.+.+.|+ |||.+++
T Consensus 255 ~~vlh~~~~~~~~~~l~~~~~~L~--pgG~l~i 285 (363)
T 3dp7_A 255 SQFLDCFSEEEVISILTRVAQSIG--KDSKVYI 285 (363)
T ss_dssp ESCSTTSCHHHHHHHHHHHHHHCC--TTCEEEE
T ss_pred echhhhCCHHHHHHHHHHHHHhcC--CCcEEEE
Confidence 999987544 4688999999998 4555444
|
| >3c3p_A Methyltransferase; NP_951602.1, structural genomics, joint for structural genomics, JCSG, protein structure initiative transferase; 1.90A {Geobacter sulfurreducens pca} | Back alignment and structure |
|---|
Probab=99.22 E-value=1.8e-11 Score=99.91 Aligned_cols=99 Identities=17% Similarity=0.112 Sum_probs=78.1
Q ss_pred CCCeEEEecCCCCHHHHHHHHh---CCEEEEEcCCCcHHHHHHHHHHHHHcCC--ceEEEEeecCCCCcCcCCCCCcEEE
Q 026274 70 SGANVVELGAGTSLPGLVAAKV---GSNVTLTDDSNRIEVLKNMRRVCEMNKL--NCRVMGLTWGFLDASIFDLNPNIIL 144 (241)
Q Consensus 70 ~~~~VLElGcGtGl~sl~la~~---g~~V~~tD~~~~~~~l~~~~~n~~~n~~--~~~~~~l~w~~~~~~~~~~~fDlIl 144 (241)
++++|||+|||+|..++.+++. +.+|+++|+++ ++++.+++|+..++. ++++...++.+.. +..+. ||+|+
T Consensus 56 ~~~~vLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~--~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~-~~~~~-fD~v~ 131 (210)
T 3c3p_A 56 QPQLVVVPGDGLGCASWWFARAISISSRVVMIDPDR--DNVEHARRMLHDNGLIDRVELQVGDPLGIA-AGQRD-IDILF 131 (210)
T ss_dssp CCSEEEEESCGGGHHHHHHHTTSCTTCEEEEEESCH--HHHHHHHHHHHHHSGGGGEEEEESCHHHHH-TTCCS-EEEEE
T ss_pred CCCEEEEEcCCccHHHHHHHHhCCCCCEEEEEECCH--HHHHHHHHHHHHCCCCceEEEEEecHHHHh-ccCCC-CCEEE
Confidence 5679999999999999999987 56999999995 799999999988776 4667666654321 12235 99999
Q ss_pred EcCCcCCCccHHHHHHHHHHHhhcCCCeEEEEE
Q 026274 145 GADVFYDASAFDDLFATITYLLQSSPGSVFITT 177 (241)
Q Consensus 145 ~~dvly~~~~~~~ll~~~~~lL~~~~~~~~~~~ 177 (241)
+. ........+++.+.++|+ +||++++.
T Consensus 132 ~~---~~~~~~~~~l~~~~~~Lk--pgG~lv~~ 159 (210)
T 3c3p_A 132 MD---CDVFNGADVLERMNRCLA--KNALLIAV 159 (210)
T ss_dssp EE---TTTSCHHHHHHHHGGGEE--EEEEEEEE
T ss_pred Ec---CChhhhHHHHHHHHHhcC--CCeEEEEE
Confidence 76 235678899999999998 67777764
|
| >3dou_A Ribosomal RNA large subunit methyltransferase J; cell division, structural genomics, protein structure initiative, PSI; HET: SAM; 1.45A {Thermoplasma volcanium} SCOP: c.66.1.0 | Back alignment and structure |
|---|
Probab=99.21 E-value=3.4e-10 Score=91.69 Aligned_cols=134 Identities=10% Similarity=-0.004 Sum_probs=87.1
Q ss_pred ccHHHHHHHHHhccCCCCCCeEEEecCCCCHHHHHHHHhCCEEEEEcCCCcHHHHHHHHHHHHHcCCceEEEEeecCCCC
Q 026274 53 PCSVILAEYVWQQRYRFSGANVVELGAGTSLPGLVAAKVGSNVTLTDDSNRIEVLKNMRRVCEMNKLNCRVMGLTWGFLD 132 (241)
Q Consensus 53 ~~s~~L~~~l~~~~~~~~~~~VLElGcGtGl~sl~la~~g~~V~~tD~~~~~~~l~~~~~n~~~n~~~~~~~~l~w~~~~ 132 (241)
.+++.|.+.+.+.....++.+|||||||+|.++..+++.+++|+++|+++. . ...++.+.+.|..+..
T Consensus 8 Ra~~KL~ei~~~~~~~~~g~~VLDlG~G~G~~s~~la~~~~~V~gvD~~~~---~---------~~~~v~~~~~D~~~~~ 75 (191)
T 3dou_A 8 RAAFKLEFLLDRYRVVRKGDAVIEIGSSPGGWTQVLNSLARKIISIDLQEM---E---------EIAGVRFIRCDIFKET 75 (191)
T ss_dssp HHHHHHHHHHHHHCCSCTTCEEEEESCTTCHHHHHHTTTCSEEEEEESSCC---C---------CCTTCEEEECCTTSSS
T ss_pred cHHHHHHHHHHHcCCCCCCCEEEEEeecCCHHHHHHHHcCCcEEEEecccc---c---------cCCCeEEEEccccCHH
Confidence 367777777766555557889999999999999999999889999999972 0 1124667777766532
Q ss_pred cC-----cCC----CCCcEEEEcCCcCCC-----------ccHHHHHHHHHHHhhcCCCeEEEEEeeccCchhHHHHHHH
Q 026274 133 AS-----IFD----LNPNIILGADVFYDA-----------SAFDDLFATITYLLQSSPGSVFITTYHNRSGHHLIEFLMV 192 (241)
Q Consensus 133 ~~-----~~~----~~fDlIl~~dvly~~-----------~~~~~ll~~~~~lL~~~~~~~~~~~~~~r~~~~~~~~~~~ 192 (241)
.. ... .+||+|++....... .....+++.+.++|+ |||.+++..........+...++
T Consensus 76 ~~~~~~~~~~~~~~~~~D~Vlsd~~~~~~g~~~~d~~~~~~l~~~~l~~a~~~Lk--pGG~lv~k~~~~~~~~~~~~~l~ 153 (191)
T 3dou_A 76 IFDDIDRALREEGIEKVDDVVSDAMAKVSGIPSRDHAVSYQIGQRVMEIAVRYLR--NGGNVLLKQFQGDMTNDFIAIWR 153 (191)
T ss_dssp HHHHHHHHHHHHTCSSEEEEEECCCCCCCSCHHHHHHHHHHHHHHHHHHHHHHEE--EEEEEEEEEECSTHHHHHHHHHG
T ss_pred HHHHHHHHhhcccCCcceEEecCCCcCCCCCcccCHHHHHHHHHHHHHHHHHHcc--CCCEEEEEEcCCCCHHHHHHHHH
Confidence 10 011 389999985432211 123567888899998 67777765544333333333343
Q ss_pred HcCCEEEEE
Q 026274 193 KWGLKCVKL 201 (241)
Q Consensus 193 ~~g~~~~~i 201 (241)
. .|.-+.+
T Consensus 154 ~-~F~~v~~ 161 (191)
T 3dou_A 154 K-NFSSYKI 161 (191)
T ss_dssp G-GEEEEEE
T ss_pred H-hcCEEEE
Confidence 2 4555544
|
| >3mq2_A 16S rRNA methyltransferase; methyltranferase, ribosomal, antibiotic resistance, aminoglycoside, S-adenosyl-L-methionine; HET: SAH; 1.69A {Streptomyces SP} | Back alignment and structure |
|---|
Probab=99.21 E-value=1.7e-11 Score=100.50 Aligned_cols=126 Identities=12% Similarity=0.081 Sum_probs=84.1
Q ss_pred CCCCeEEEecCCCCHHHHHHHHh--CCEEEEEcCCCcHHHHHHHHHHHH----HcCC-ceEEEEeecCCCCcCcCCCCCc
Q 026274 69 FSGANVVELGAGTSLPGLVAAKV--GSNVTLTDDSNRIEVLKNMRRVCE----MNKL-NCRVMGLTWGFLDASIFDLNPN 141 (241)
Q Consensus 69 ~~~~~VLElGcGtGl~sl~la~~--g~~V~~tD~~~~~~~l~~~~~n~~----~n~~-~~~~~~l~w~~~~~~~~~~~fD 141 (241)
.++.+|||+|||+|..+..+++. +.+|+++|+++ +|++.+.++++ .++. ++++...|..+.. ..+.. |
T Consensus 26 ~~~~~vLDiGcG~G~~~~~la~~~p~~~v~gvD~s~--~~l~~~~~~a~~~~~~~~~~~v~~~~~d~~~l~--~~~~~-d 100 (218)
T 3mq2_A 26 QYDDVVLDVGTGDGKHPYKVARQNPSRLVVALDADK--SRMEKISAKAAAKPAKGGLPNLLYLWATAERLP--PLSGV-G 100 (218)
T ss_dssp TSSEEEEEESCTTCHHHHHHHHHCTTEEEEEEESCG--GGGHHHHHHHTSCGGGTCCTTEEEEECCSTTCC--SCCCE-E
T ss_pred cCCCEEEEecCCCCHHHHHHHHHCCCCEEEEEECCH--HHHHHHHHHHHHhhhhcCCCceEEEecchhhCC--CCCCC-C
Confidence 35679999999999999999998 56999999997 57876544442 3343 6777777776532 22333 6
Q ss_pred EEEEcC---CcC--CCccHHHHHHHHHHHhhcCCCeEEEEEeecc--------------Cc----hhHHHHHHHHcCCEE
Q 026274 142 IILGAD---VFY--DASAFDDLFATITYLLQSSPGSVFITTYHNR--------------SG----HHLIEFLMVKWGLKC 198 (241)
Q Consensus 142 lIl~~d---vly--~~~~~~~ll~~~~~lL~~~~~~~~~~~~~~r--------------~~----~~~~~~~~~~~g~~~ 198 (241)
.|...- ..+ +.++...+++.+.++|+ |||.+++.+... .. ...+...+++.||++
T Consensus 101 ~v~~~~~~~~~~~~~~~~~~~~l~~~~~~Lk--pgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~aGf~i 178 (218)
T 3mq2_A 101 ELHVLMPWGSLLRGVLGSSPEMLRGMAAVCR--PGASFLVALNLHAWRPSVPEVGEHPEPTPDSADEWLAPRYAEAGWKL 178 (218)
T ss_dssp EEEEESCCHHHHHHHHTSSSHHHHHHHHTEE--EEEEEEEEEEGGGBTTBCGGGTTCCCCCHHHHHHHHHHHHHHTTEEE
T ss_pred EEEEEccchhhhhhhhccHHHHHHHHHHHcC--CCcEEEEEeccccccccccccccCCccchHHHHHHHHHHHHHcCCCc
Confidence 666221 111 33445889999999999 677777664221 01 112344568899999
Q ss_pred EEE
Q 026274 199 VKL 201 (241)
Q Consensus 199 ~~i 201 (241)
..+
T Consensus 179 ~~~ 181 (218)
T 3mq2_A 179 ADC 181 (218)
T ss_dssp EEE
T ss_pred eee
Confidence 886
|
| >3bwc_A Spermidine synthase; SAM, SGPP, structura genomics, PSI, protein structure initiative, structural GEN pathogenic protozoa consortium; HET: MSE SAM; 2.30A {Trypanosoma cruzi} PDB: 3bwb_A* | Back alignment and structure |
|---|
Probab=99.21 E-value=5.9e-11 Score=102.99 Aligned_cols=129 Identities=11% Similarity=0.041 Sum_probs=87.0
Q ss_pred CCCeEEEecCCCCHHHHHHHHh--CCEEEEEcCCCcHHHHHHHHHHHHH-----cCCceEEEEeecCCCCcCcCCCCCcE
Q 026274 70 SGANVVELGAGTSLPGLVAAKV--GSNVTLTDDSNRIEVLKNMRRVCEM-----NKLNCRVMGLTWGFLDASIFDLNPNI 142 (241)
Q Consensus 70 ~~~~VLElGcGtGl~sl~la~~--g~~V~~tD~~~~~~~l~~~~~n~~~-----n~~~~~~~~l~w~~~~~~~~~~~fDl 142 (241)
++++|||||||+|.++..+++. ..+|+++|+++ ++++.+++++.. ...++++...|+.+......+++||+
T Consensus 95 ~~~~VLdiG~G~G~~~~~l~~~~~~~~v~~vDid~--~~i~~a~~~~~~~~~~~~~~~v~~~~~D~~~~~~~~~~~~fDv 172 (304)
T 3bwc_A 95 KPERVLIIGGGDGGVLREVLRHGTVEHCDLVDIDG--EVMEQSKQHFPQISRSLADPRATVRVGDGLAFVRQTPDNTYDV 172 (304)
T ss_dssp SCCEEEEEECTTSHHHHHHHTCTTCCEEEEEESCH--HHHHHHHHHCHHHHGGGGCTTEEEEESCHHHHHHSSCTTCEEE
T ss_pred CCCeEEEEcCCCCHHHHHHHhCCCCCEEEEEECCH--HHHHHHHHHhHHhhcccCCCcEEEEECcHHHHHHhccCCceeE
Confidence 5679999999999999999987 35999999995 699999987632 23457777766654322213468999
Q ss_pred EEEcCCcCCCccH----HHHHHHHHHHhhcCCCeEEEEEeeccC----chhHHHHHHHHcCCEEEEEe
Q 026274 143 ILGADVFYDASAF----DDLFATITYLLQSSPGSVFITTYHNRS----GHHLIEFLMVKWGLKCVKLV 202 (241)
Q Consensus 143 Il~~dvly~~~~~----~~ll~~~~~lL~~~~~~~~~~~~~~r~----~~~~~~~~~~~~g~~~~~i~ 202 (241)
|++.-..+..+.. ..+++.+.++|+ +||++++...... ........+++.||..+...
T Consensus 173 Ii~d~~~~~~~~~~l~~~~~l~~~~~~Lk--pgG~lv~~~~~~~~~~~~~~~~~~~l~~~GF~~v~~~ 238 (304)
T 3bwc_A 173 VIIDTTDPAGPASKLFGEAFYKDVLRILK--PDGICCNQGESIWLDLELIEKMSRFIRETGFASVQYA 238 (304)
T ss_dssp EEEECC---------CCHHHHHHHHHHEE--EEEEEEEEECCTTTCHHHHHHHHHHHHHHTCSEEEEE
T ss_pred EEECCCCccccchhhhHHHHHHHHHHhcC--CCcEEEEecCCcccchHHHHHHHHHHHhCCCCcEEEE
Confidence 9985443332211 688999999998 6777776543321 11223345678899876663
|
| >2b25_A Hypothetical protein; structural genomics, methyl transferase, SAM, structural GEN consortium, SGC, transferase; HET: SAM; 2.50A {Homo sapiens} SCOP: c.66.1.13 | Back alignment and structure |
|---|
Probab=99.21 E-value=9.1e-11 Score=102.80 Aligned_cols=104 Identities=14% Similarity=0.044 Sum_probs=73.9
Q ss_pred CCCCCCeEEEecCCCCHHHHHHHHh-C--CEEEEEcCCCcHHHHHHHHHHHHH-------cC-----CceEEEEeecCCC
Q 026274 67 YRFSGANVVELGAGTSLPGLVAAKV-G--SNVTLTDDSNRIEVLKNMRRVCEM-------NK-----LNCRVMGLTWGFL 131 (241)
Q Consensus 67 ~~~~~~~VLElGcGtGl~sl~la~~-g--~~V~~tD~~~~~~~l~~~~~n~~~-------n~-----~~~~~~~l~w~~~ 131 (241)
...++.+|||+|||+|.+++.+++. | .+|+++|+++ ++++.+++|+.. |+ .++++...|..+.
T Consensus 102 ~~~~g~~VLDiG~G~G~~~~~la~~~g~~~~v~~vD~~~--~~~~~a~~~~~~~~~~~~ln~~~~~~~~v~~~~~d~~~~ 179 (336)
T 2b25_A 102 DINPGDTVLEAGSGSGGMSLFLSKAVGSQGRVISFEVRK--DHHDLAKKNYKHWRDSWKLSHVEEWPDNVDFIHKDISGA 179 (336)
T ss_dssp TCCTTCEEEEECCTTSHHHHHHHHHHCTTCEEEEEESSH--HHHHHHHHHHHHHHHHHTTTCSSCCCCCEEEEESCTTCC
T ss_pred CCCCCCEEEEeCCCcCHHHHHHHHHhCCCceEEEEeCCH--HHHHHHHHHHHHhhcccccccccccCCceEEEECChHHc
Confidence 4557889999999999999999997 5 5899999995 799999999875 22 3567776666554
Q ss_pred CcCcCCCCCcEEEEcCCcCCCccHHHHHHHHHHHhhcCCCeEEEEEee
Q 026274 132 DASIFDLNPNIILGADVFYDASAFDDLFATITYLLQSSPGSVFITTYH 179 (241)
Q Consensus 132 ~~~~~~~~fDlIl~~dvly~~~~~~~ll~~~~~lL~~~~~~~~~~~~~ 179 (241)
..+..+.+||+|++.. .....+++.+.++|+ |||.+++...
T Consensus 180 ~~~~~~~~fD~V~~~~-----~~~~~~l~~~~~~Lk--pgG~lv~~~~ 220 (336)
T 2b25_A 180 TEDIKSLTFDAVALDM-----LNPHVTLPVFYPHLK--HGGVCAVYVV 220 (336)
T ss_dssp C-------EEEEEECS-----SSTTTTHHHHGGGEE--EEEEEEEEES
T ss_pred ccccCCCCeeEEEECC-----CCHHHHHHHHHHhcC--CCcEEEEEeC
Confidence 2233345799999843 233347888999998 5676665544
|
| >3c3y_A Pfomt, O-methyltransferase; plant secondary metabolism; HET: SAH; 1.37A {Mesembryanthemum crystallinum} | Back alignment and structure |
|---|
Probab=99.20 E-value=3.7e-11 Score=100.43 Aligned_cols=102 Identities=11% Similarity=0.056 Sum_probs=79.7
Q ss_pred CCCCeEEEecCCCCHHHHHHHHh---CCEEEEEcCCCcHHHHHHHHHHHHHcCC--ceEEEEeecCCCCcCc-----CCC
Q 026274 69 FSGANVVELGAGTSLPGLVAAKV---GSNVTLTDDSNRIEVLKNMRRVCEMNKL--NCRVMGLTWGFLDASI-----FDL 138 (241)
Q Consensus 69 ~~~~~VLElGcGtGl~sl~la~~---g~~V~~tD~~~~~~~l~~~~~n~~~n~~--~~~~~~l~w~~~~~~~-----~~~ 138 (241)
.++++|||+|||+|..++.+++. +.+|+++|+++ ++++.+++|++..+. ++++...++.+..... ...
T Consensus 69 ~~~~~VLeiG~G~G~~~~~la~~~~~~~~v~~iD~~~--~~~~~a~~~~~~~g~~~~i~~~~gda~~~l~~l~~~~~~~~ 146 (237)
T 3c3y_A 69 VNAKKTIEVGVFTGYSLLLTALSIPDDGKITAIDFDR--EAYEIGLPFIRKAGVEHKINFIESDAMLALDNLLQGQESEG 146 (237)
T ss_dssp TTCCEEEEECCTTSHHHHHHHHHSCTTCEEEEEESCH--HHHHHHHHHHHHTTCGGGEEEEESCHHHHHHHHHHSTTCTT
T ss_pred hCCCEEEEeCCCCCHHHHHHHHhCCCCCEEEEEECCH--HHHHHHHHHHHHcCCCCcEEEEEcCHHHHHHHHHhccCCCC
Confidence 45679999999999999999986 57999999995 799999999998887 3667766654322111 145
Q ss_pred CCcEEEEcCCcCCCccHHHHHHHHHHHhhcCCCeEEEEE
Q 026274 139 NPNIILGADVFYDASAFDDLFATITYLLQSSPGSVFITT 177 (241)
Q Consensus 139 ~fDlIl~~dvly~~~~~~~ll~~~~~lL~~~~~~~~~~~ 177 (241)
+||+|+.. ........+++.+.++|+ +||++++.
T Consensus 147 ~fD~I~~d---~~~~~~~~~l~~~~~~L~--pGG~lv~d 180 (237)
T 3c3y_A 147 SYDFGFVD---ADKPNYIKYHERLMKLVK--VGGIVAYD 180 (237)
T ss_dssp CEEEEEEC---SCGGGHHHHHHHHHHHEE--EEEEEEEE
T ss_pred CcCEEEEC---CchHHHHHHHHHHHHhcC--CCeEEEEe
Confidence 89999975 234577889999999998 67887776
|
| >1af7_A Chemotaxis receptor methyltransferase CHER; chemotaxis receptor methylation; HET: SAH; 2.00A {Salmonella typhimurium} SCOP: a.58.1.1 c.66.1.8 PDB: 1bc5_A* | Back alignment and structure |
|---|
Probab=99.20 E-value=1.8e-11 Score=104.93 Aligned_cols=105 Identities=16% Similarity=0.089 Sum_probs=78.3
Q ss_pred CCCeEEEecCCCCH----HHHHHHHh-C-----CEEEEEcCCCcHHHHHHHHHHHHH-----------------------
Q 026274 70 SGANVVELGAGTSL----PGLVAAKV-G-----SNVTLTDDSNRIEVLKNMRRVCEM----------------------- 116 (241)
Q Consensus 70 ~~~~VLElGcGtGl----~sl~la~~-g-----~~V~~tD~~~~~~~l~~~~~n~~~----------------------- 116 (241)
++.+|||+|||||. +++.++.. + .+|++||+|+ +||+.+++++..
T Consensus 105 ~~~rIld~GCgTGee~ysiAi~L~e~~~~~~~~~~I~atDis~--~~L~~Ar~~~y~~~~~~~~~~~~~~~~f~~~~~~~ 182 (274)
T 1af7_A 105 GEYRVWSAAASTGEEPYSIAITLADALGMAPGRWKVFASDIDT--EVLEKARSGIYRLSELKTLSPQQLQRYFMRGTGPH 182 (274)
T ss_dssp SCEEEEESCCTTTHHHHHHHHHHHHHHCSCTTSEEEEEEESCH--HHHHHHHHTEEEGGGGTTSCHHHHHHHEEECCTTS
T ss_pred CCcEEEEeeccCChhHHHHHHHHHHhcccCCCCeEEEEEECCH--HHHHHHHhcCCchhhhhcCCHHHHHHHhhccccCC
Confidence 35689999999997 67777765 3 5899999995 799999987510
Q ss_pred cC---------CceEEEEeecCCCCcCcCCCCCcEEEEcCCcCCCcc--HHHHHHHHHHHhhcCCCeEEEEEee
Q 026274 117 NK---------LNCRVMGLTWGFLDASIFDLNPNIILGADVFYDASA--FDDLFATITYLLQSSPGSVFITTYH 179 (241)
Q Consensus 117 n~---------~~~~~~~l~w~~~~~~~~~~~fDlIl~~dvly~~~~--~~~ll~~~~~lL~~~~~~~~~~~~~ 179 (241)
++ ..+.+...++.+...+ ..++||+|+|.+++.|.+. ...+++.+.+.|+ |||.+++++.
T Consensus 183 ~~~~~v~~~lr~~V~F~~~dl~~~~~~-~~~~fDlI~crnvliyf~~~~~~~vl~~~~~~L~--pgG~L~lg~s 253 (274)
T 1af7_A 183 EGLVRVRQELANYVEFSSVNLLEKQYN-VPGPFDAIFCRNVMIYFDKTTQEDILRRFVPLLK--PDGLLFAGHS 253 (274)
T ss_dssp CSEEEECHHHHTTEEEEECCTTCSSCC-CCCCEEEEEECSSGGGSCHHHHHHHHHHHGGGEE--EEEEEEECTT
T ss_pred CCceeechhhcccCeEEecccCCCCCC-cCCCeeEEEECCchHhCCHHHHHHHHHHHHHHhC--CCcEEEEEec
Confidence 11 1467777777653111 1358999999999866543 4899999999998 7888888643
|
| >3ckk_A TRNA (guanine-N(7)-)-methyltransferase; mettl1, S-adenosyl-L-methionine, tRNA Pro structural genomics, structural genomics consortium, SGC; HET: SAM; 1.55A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.20 E-value=1.1e-10 Score=97.62 Aligned_cols=125 Identities=9% Similarity=-0.037 Sum_probs=82.6
Q ss_pred CCCeEEEecCCCCHHHHHHHHh--CCEEEEEcCCCcHHHHHHHHHHHHH------cC-CceEEEEeecCCCCcC-cCCCC
Q 026274 70 SGANVVELGAGTSLPGLVAAKV--GSNVTLTDDSNRIEVLKNMRRVCEM------NK-LNCRVMGLTWGFLDAS-IFDLN 139 (241)
Q Consensus 70 ~~~~VLElGcGtGl~sl~la~~--g~~V~~tD~~~~~~~l~~~~~n~~~------n~-~~~~~~~l~w~~~~~~-~~~~~ 139 (241)
++.+|||||||+|..++.+|+. +.+|+++|+++ .|++.+++++.. ++ .++++...|..+.... ..+.+
T Consensus 46 ~~~~vLDiGcG~G~~~~~la~~~p~~~v~GiDis~--~~l~~A~~~~~~l~~~~~~~~~nv~~~~~d~~~~l~~~~~~~~ 123 (235)
T 3ckk_A 46 AQVEFADIGCGYGGLLVELSPLFPDTLILGLEIRV--KVSDYVQDRIRALRAAPAGGFQNIACLRSNAMKHLPNFFYKGQ 123 (235)
T ss_dssp CCEEEEEETCTTCHHHHHHGGGSTTSEEEEEESCH--HHHHHHHHHHHHHHHSTTCCCTTEEEEECCTTTCHHHHCCTTC
T ss_pred CCCeEEEEccCCcHHHHHHHHHCCCCeEEEEECCH--HHHHHHHHHHHHHHHHHhcCCCeEEEEECcHHHhhhhhCCCcC
Confidence 4568999999999999999987 45899999995 699999988754 23 3577777776542211 23568
Q ss_pred CcEEEEcCCcCCCc--------cHHHHHHHHHHHhhcCCCeEEEEEeeccCchhHHHHHHHHcC-CEE
Q 026274 140 PNIILGADVFYDAS--------AFDDLFATITYLLQSSPGSVFITTYHNRSGHHLIEFLMVKWG-LKC 198 (241)
Q Consensus 140 fDlIl~~dvly~~~--------~~~~ll~~~~~lL~~~~~~~~~~~~~~r~~~~~~~~~~~~~g-~~~ 198 (241)
||.|+..-+-.+.. ....+++.+.++|+ +||.+++..............+.+.+ |..
T Consensus 124 ~D~v~~~~~dp~~k~~h~krr~~~~~~l~~~~~~Lk--pGG~l~~~td~~~~~~~~~~~l~~~~~f~~ 189 (235)
T 3ckk_A 124 LTKMFFLFPDPHFKRTKHKWRIISPTLLAEYAYVLR--VGGLVYTITDVLELHDWMCTHFEEHPLFER 189 (235)
T ss_dssp EEEEEEESCC-----------CCCHHHHHHHHHHEE--EEEEEEEEESCHHHHHHHHHHHHTSTTEEE
T ss_pred eeEEEEeCCCchhhhhhhhhhhhhHHHHHHHHHHCC--CCCEEEEEeCCHHHHHHHHHHHHHCCCccc
Confidence 99998642111110 12579999999998 67777776544332222233345555 443
|
| >3r3h_A O-methyltransferase, SAM-dependent; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 2.65A {Legionella pneumophila subsp} | Back alignment and structure |
|---|
Probab=99.19 E-value=6.9e-12 Score=105.38 Aligned_cols=103 Identities=14% Similarity=0.059 Sum_probs=79.9
Q ss_pred CCCCCeEEEecCCCCHHHHHHHHh---CCEEEEEcCCCcHHHHHHHHHHHHHcCC--ceEEEEeecCCCCcCcC----CC
Q 026274 68 RFSGANVVELGAGTSLPGLVAAKV---GSNVTLTDDSNRIEVLKNMRRVCEMNKL--NCRVMGLTWGFLDASIF----DL 138 (241)
Q Consensus 68 ~~~~~~VLElGcGtGl~sl~la~~---g~~V~~tD~~~~~~~l~~~~~n~~~n~~--~~~~~~l~w~~~~~~~~----~~ 138 (241)
..++++|||||||+|..++.+|+. +++|+++|+++ ++++.+++|++.++. ++++...+..+...... .+
T Consensus 58 ~~~~~~VLDiG~G~G~~t~~la~~~~~~~~v~~iD~~~--~~~~~a~~~~~~~g~~~~i~~~~gda~~~l~~~~~~~~~~ 135 (242)
T 3r3h_A 58 LTRAKKVLELGTFTGYSALAMSLALPDDGQVITCDINE--GWTKHAHPYWREAKQEHKIKLRLGPALDTLHSLLNEGGEH 135 (242)
T ss_dssp HHTCSEEEEEESCCSHHHHHHHHTSCTTCEEEEEECCC--SSCCCSHHHHHHTTCTTTEEEEESCHHHHHHHHHHHHCSS
T ss_pred hcCcCEEEEeeCCcCHHHHHHHHhCCCCCEEEEEECCH--HHHHHHHHHHHHcCCCCcEEEEEcCHHHHHHHHhhccCCC
Confidence 346689999999999999999984 56999999997 599999999998876 47777666543221110 36
Q ss_pred CCcEEEEcCCcCCCccHHHHHHHHHHHhhcCCCeEEEEE
Q 026274 139 NPNIILGADVFYDASAFDDLFATITYLLQSSPGSVFITT 177 (241)
Q Consensus 139 ~fDlIl~~dvly~~~~~~~ll~~~~~lL~~~~~~~~~~~ 177 (241)
+||+|++... ......+++.+.++|+ |||++++.
T Consensus 136 ~fD~V~~d~~---~~~~~~~l~~~~~~Lk--pGG~lv~d 169 (242)
T 3r3h_A 136 QFDFIFIDAD---KTNYLNYYELALKLVT--PKGLIAID 169 (242)
T ss_dssp CEEEEEEESC---GGGHHHHHHHHHHHEE--EEEEEEEE
T ss_pred CEeEEEEcCC---hHHhHHHHHHHHHhcC--CCeEEEEE
Confidence 8999997543 5567788999999998 67888775
|
| >2pbf_A Protein-L-isoaspartate O-methyltransferase beta-A methyltransferase; protein repair, isoaspartyl formation, P. falciparum; HET: SAH; 2.00A {Plasmodium falciparum} | Back alignment and structure |
|---|
Probab=99.17 E-value=4e-10 Score=92.80 Aligned_cols=103 Identities=12% Similarity=0.034 Sum_probs=78.7
Q ss_pred CCCCCeEEEecCCCCHHHHHHHHhCC-------EEEEEcCCCcHHHHHHHHHHHHHcC------CceEEEEeecCCCCcC
Q 026274 68 RFSGANVVELGAGTSLPGLVAAKVGS-------NVTLTDDSNRIEVLKNMRRVCEMNK------LNCRVMGLTWGFLDAS 134 (241)
Q Consensus 68 ~~~~~~VLElGcGtGl~sl~la~~g~-------~V~~tD~~~~~~~l~~~~~n~~~n~------~~~~~~~l~w~~~~~~ 134 (241)
..++.+|||+|||+|..+..+++.+. +|+++|+++ ++++.+++|+..++ .++++...|..+....
T Consensus 78 ~~~~~~VLdiG~G~G~~~~~la~~~~~~~~~~~~v~~vD~~~--~~~~~a~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~ 155 (227)
T 2pbf_A 78 LKPGSRAIDVGSGSGYLTVCMAIKMNVLENKNSYVIGLERVK--DLVNFSLENIKRDKPELLKIDNFKIIHKNIYQVNEE 155 (227)
T ss_dssp SCTTCEEEEESCTTSHHHHHHHHHTTTTTCTTCEEEEEESCH--HHHHHHHHHHHHHCGGGGSSTTEEEEECCGGGCCHH
T ss_pred CCCCCEEEEECCCCCHHHHHHHHHhcccCCCCCEEEEEeCCH--HHHHHHHHHHHHcCccccccCCEEEEECChHhcccc
Confidence 44678999999999999999998753 999999995 79999999998876 3577777666543200
Q ss_pred --cCCCCCcEEEEcCCcCCCccHHHHHHHHHHHhhcCCCeEEEEEeec
Q 026274 135 --IFDLNPNIILGADVFYDASAFDDLFATITYLLQSSPGSVFITTYHN 180 (241)
Q Consensus 135 --~~~~~fDlIl~~dvly~~~~~~~ll~~~~~lL~~~~~~~~~~~~~~ 180 (241)
....+||+|++..++.+ +++.+.++|+ +||.+++....
T Consensus 156 ~~~~~~~fD~I~~~~~~~~------~~~~~~~~Lk--pgG~lv~~~~~ 195 (227)
T 2pbf_A 156 EKKELGLFDAIHVGASASE------LPEILVDLLA--ENGKLIIPIEE 195 (227)
T ss_dssp HHHHHCCEEEEEECSBBSS------CCHHHHHHEE--EEEEEEEEEEE
T ss_pred cCccCCCcCEEEECCchHH------HHHHHHHhcC--CCcEEEEEEcc
Confidence 12357999999888765 3477888998 67777776654
|
| >1u2z_A Histone-lysine N-methyltransferase, H3 lysine-79 specific; histone methyltransferase, nucleosome; HET: SAH; 2.20A {Saccharomyces cerevisiae} SCOP: c.66.1.31 | Back alignment and structure |
|---|
Probab=99.16 E-value=1.2e-10 Score=105.65 Aligned_cols=106 Identities=13% Similarity=0.130 Sum_probs=76.8
Q ss_pred CCCCCCeEEEecCCCCHHHHHHHHh-CC-EEEEEcCCCcHHHHHHH-------HHHHHHcCC---ceEEEEe-ecCCCCc
Q 026274 67 YRFSGANVVELGAGTSLPGLVAAKV-GS-NVTLTDDSNRIEVLKNM-------RRVCEMNKL---NCRVMGL-TWGFLDA 133 (241)
Q Consensus 67 ~~~~~~~VLElGcGtGl~sl~la~~-g~-~V~~tD~~~~~~~l~~~-------~~n~~~n~~---~~~~~~l-~w~~~~~ 133 (241)
....+.+|||||||+|.+++.+|+. |+ +|+++|+++ ++++.+ ++|+...++ ++++... ++.....
T Consensus 239 ~l~~g~~VLDLGCGsG~la~~LA~~~g~~~V~GVDis~--~~l~~A~~Ml~~ar~~~~~~Gl~~~nV~~i~gD~~~~~~~ 316 (433)
T 1u2z_A 239 QLKKGDTFMDLGSGVGNCVVQAALECGCALSFGCEIMD--DASDLTILQYEELKKRCKLYGMRLNNVEFSLKKSFVDNNR 316 (433)
T ss_dssp TCCTTCEEEEESCTTSHHHHHHHHHHCCSEEEEEECCH--HHHHHHHHHHHHHHHHHHHTTBCCCCEEEEESSCSTTCHH
T ss_pred CCCCCCEEEEeCCCcCHHHHHHHHHCCCCEEEEEeCCH--HHHHHHHHhHHHHHHHHHHcCCCCCceEEEEcCccccccc
Confidence 4457889999999999999999985 64 799999995 577777 888888773 4555543 2211000
Q ss_pred -CcCCCCCcEEEEcCCcCCCccHHHHHHHHHHHhhcCCCeEEEEE
Q 026274 134 -SIFDLNPNIILGADVFYDASAFDDLFATITYLLQSSPGSVFITT 177 (241)
Q Consensus 134 -~~~~~~fDlIl~~dvly~~~~~~~ll~~~~~lL~~~~~~~~~~~ 177 (241)
.....+||+|+++.+++ .+....+++.+.+.|+ +||.+++.
T Consensus 317 ~~~~~~~FDvIvvn~~l~-~~d~~~~L~el~r~LK--pGG~lVi~ 358 (433)
T 1u2z_A 317 VAELIPQCDVILVNNFLF-DEDLNKKVEKILQTAK--VGCKIISL 358 (433)
T ss_dssp HHHHGGGCSEEEECCTTC-CHHHHHHHHHHHTTCC--TTCEEEES
T ss_pred cccccCCCCEEEEeCccc-cccHHHHHHHHHHhCC--CCeEEEEe
Confidence 00135799999988775 4677778889999998 66766665
|
| >3cbg_A O-methyltransferase; cyanobacterium; HET: SAH FER 4FE; 2.00A {Synechocystis SP} | Back alignment and structure |
|---|
Probab=99.16 E-value=4.8e-11 Score=99.29 Aligned_cols=102 Identities=10% Similarity=0.064 Sum_probs=78.1
Q ss_pred CCCCeEEEecCCCCHHHHHHHHh---CCEEEEEcCCCcHHHHHHHHHHHHHcCC--ceEEEEeecCCCCcCcC--C--CC
Q 026274 69 FSGANVVELGAGTSLPGLVAAKV---GSNVTLTDDSNRIEVLKNMRRVCEMNKL--NCRVMGLTWGFLDASIF--D--LN 139 (241)
Q Consensus 69 ~~~~~VLElGcGtGl~sl~la~~---g~~V~~tD~~~~~~~l~~~~~n~~~n~~--~~~~~~l~w~~~~~~~~--~--~~ 139 (241)
.++++|||+|||+|..++.+++. +.+|+++|+++ ++++.+++++..++. ++++...++.+...... + .+
T Consensus 71 ~~~~~vLdiG~G~G~~~~~la~~~~~~~~v~~iD~~~--~~~~~a~~~~~~~g~~~~i~~~~~d~~~~l~~l~~~~~~~~ 148 (232)
T 3cbg_A 71 TGAKQVLEIGVFRGYSALAMALQLPPDGQIIACDQDP--NATAIAKKYWQKAGVAEKISLRLGPALATLEQLTQGKPLPE 148 (232)
T ss_dssp HTCCEEEEECCTTSHHHHHHHTTSCTTCEEEEEESCH--HHHHHHHHHHHHHTCGGGEEEEESCHHHHHHHHHTSSSCCC
T ss_pred cCCCEEEEecCCCCHHHHHHHHhCCCCCEEEEEECCH--HHHHHHHHHHHHcCCCCcEEEEEcCHHHHHHHHHhcCCCCC
Confidence 35679999999999999999986 46999999995 799999999988876 36666655432211111 1 58
Q ss_pred CcEEEEcCCcCCCccHHHHHHHHHHHhhcCCCeEEEEE
Q 026274 140 PNIILGADVFYDASAFDDLFATITYLLQSSPGSVFITT 177 (241)
Q Consensus 140 fDlIl~~dvly~~~~~~~ll~~~~~lL~~~~~~~~~~~ 177 (241)
||+|++... ......+++.+.++|+ +||++++.
T Consensus 149 fD~V~~d~~---~~~~~~~l~~~~~~Lk--pgG~lv~~ 181 (232)
T 3cbg_A 149 FDLIFIDAD---KRNYPRYYEIGLNLLR--RGGLMVID 181 (232)
T ss_dssp EEEEEECSC---GGGHHHHHHHHHHTEE--EEEEEEEE
T ss_pred cCEEEECCC---HHHHHHHHHHHHHHcC--CCeEEEEe
Confidence 999996533 4577889999999998 67888775
|
| >2qe6_A Uncharacterized protein TFU_2867; putative methyltransferase, structural genomics, joint cente structural genomics, JCSG; HET: NEP SAM; 1.95A {Thermobifida fusca} | Back alignment and structure |
|---|
Probab=99.16 E-value=6.4e-10 Score=95.03 Aligned_cols=105 Identities=22% Similarity=0.199 Sum_probs=79.7
Q ss_pred CCeEEEecCCC---CHHHHHHHHh--CCEEEEEcCCCcHHHHHHHHHHHHHcCCceEEEEeecCCCCc--------CcCC
Q 026274 71 GANVVELGAGT---SLPGLVAAKV--GSNVTLTDDSNRIEVLKNMRRVCEMNKLNCRVMGLTWGFLDA--------SIFD 137 (241)
Q Consensus 71 ~~~VLElGcGt---Gl~sl~la~~--g~~V~~tD~~~~~~~l~~~~~n~~~n~~~~~~~~l~w~~~~~--------~~~~ 137 (241)
..+|||||||+ |.+...+++. +++|+++|+++ .|++.+++++.. ..++++...|..+... ...+
T Consensus 78 ~~~vLDlGcG~pt~G~~~~~~~~~~p~~~v~~vD~sp--~~l~~Ar~~~~~-~~~v~~~~~D~~~~~~~~~~~~~~~~~d 154 (274)
T 2qe6_A 78 ISQFLDLGSGLPTVQNTHEVAQSVNPDARVVYVDIDP--MVLTHGRALLAK-DPNTAVFTADVRDPEYILNHPDVRRMID 154 (274)
T ss_dssp CCEEEEETCCSCCSSCHHHHHHHHCTTCEEEEEESSH--HHHHHHHHHHTT-CTTEEEEECCTTCHHHHHHSHHHHHHCC
T ss_pred CCEEEEECCCCCCCChHHHHHHHhCCCCEEEEEECCh--HHHHHHHHhcCC-CCCeEEEEeeCCCchhhhccchhhccCC
Confidence 46899999999 9887777665 56999999994 799999998753 3457777777654210 0111
Q ss_pred -CCCcEEEEcCCcCCCcc--HHHHHHHHHHHhhcCCCeEEEEEeec
Q 026274 138 -LNPNIILGADVFYDASA--FDDLFATITYLLQSSPGSVFITTYHN 180 (241)
Q Consensus 138 -~~fDlIl~~dvly~~~~--~~~ll~~~~~lL~~~~~~~~~~~~~~ 180 (241)
.+||+|+++.++++.++ ...+++.+.++|+ |||.+++....
T Consensus 155 ~~~~d~v~~~~vlh~~~d~~~~~~l~~~~~~L~--pGG~l~i~~~~ 198 (274)
T 2qe6_A 155 FSRPAAIMLVGMLHYLSPDVVDRVVGAYRDALA--PGSYLFMTSLV 198 (274)
T ss_dssp TTSCCEEEETTTGGGSCTTTHHHHHHHHHHHSC--TTCEEEEEEEB
T ss_pred CCCCEEEEEechhhhCCcHHHHHHHHHHHHhCC--CCcEEEEEEec
Confidence 37999999999998765 8999999999998 66666666544
|
| >3p2e_A 16S rRNA methylase; methyltransferase, transferase, NPMA; HET: SAH; 1.68A {Escherichia coli} PDB: 3p2i_A 3p2k_A* 3pb3_A* 3mte_A* | Back alignment and structure |
|---|
Probab=99.16 E-value=3.4e-11 Score=100.09 Aligned_cols=103 Identities=12% Similarity=-0.028 Sum_probs=69.5
Q ss_pred CCCeEEEecCCCCHHHHHHHHh--CCEEEEEcCCCcHHHHHHH---HHHHHHcCC-ceEEEEeecCCCCcCcCCCCCcEE
Q 026274 70 SGANVVELGAGTSLPGLVAAKV--GSNVTLTDDSNRIEVLKNM---RRVCEMNKL-NCRVMGLTWGFLDASIFDLNPNII 143 (241)
Q Consensus 70 ~~~~VLElGcGtGl~sl~la~~--g~~V~~tD~~~~~~~l~~~---~~n~~~n~~-~~~~~~l~w~~~~~~~~~~~fDlI 143 (241)
++.+|||||||+|..++.+++. +++|+++|+|+. .|++.+ ++++..++. ++.+...+..+.... ....+|.|
T Consensus 24 ~~~~vLDiGCG~G~~~~~la~~~~~~~v~GvD~s~~-~ml~~A~~A~~~~~~~~~~~v~~~~~d~~~l~~~-~~d~v~~i 101 (225)
T 3p2e_A 24 FDRVHIDLGTGDGRNIYKLAINDQNTFYIGIDPVKE-NLFDISKKIIKKPSKGGLSNVVFVIAAAESLPFE-LKNIADSI 101 (225)
T ss_dssp CSEEEEEETCTTSHHHHHHHHTCTTEEEEEECSCCG-GGHHHHHHHTSCGGGTCCSSEEEECCBTTBCCGG-GTTCEEEE
T ss_pred CCCEEEEEeccCcHHHHHHHHhCCCCEEEEEeCCHH-HHHHHHHHHHHHHHHcCCCCeEEEEcCHHHhhhh-ccCeEEEE
Confidence 5678999999999999999954 568999999952 577666 777766665 577777776654221 11345555
Q ss_pred EEcCCcCC-----CccHHHHHHHHHHHhhcCCCeEEEE
Q 026274 144 LGADVFYD-----ASAFDDLFATITYLLQSSPGSVFIT 176 (241)
Q Consensus 144 l~~dvly~-----~~~~~~ll~~~~~lL~~~~~~~~~~ 176 (241)
.++-+..+ ......+++.+.++|+ |||.+++
T Consensus 102 ~~~~~~~~~~~~~~~~~~~~l~~~~r~Lk--pGG~l~i 137 (225)
T 3p2e_A 102 SILFPWGTLLEYVIKPNRDILSNVADLAK--KEAHFEF 137 (225)
T ss_dssp EEESCCHHHHHHHHTTCHHHHHHHHTTEE--EEEEEEE
T ss_pred EEeCCCcHHhhhhhcchHHHHHHHHHhcC--CCcEEEE
Confidence 54322111 1123568899999999 6676666
|
| >1i1n_A Protein-L-isoaspartate O-methyltransferase; S-adenosyl homocysteine, protein repair; HET: SAH; 1.50A {Homo sapiens} SCOP: c.66.1.7 PDB: 1kr5_A* | Back alignment and structure |
|---|
Probab=99.15 E-value=5.9e-10 Score=91.68 Aligned_cols=101 Identities=14% Similarity=0.115 Sum_probs=77.2
Q ss_pred CCCCCeEEEecCCCCHHHHHHHHh-C--CEEEEEcCCCcHHHHHHHHHHHHHcCC------ceEEEEeecCCCCcCcCCC
Q 026274 68 RFSGANVVELGAGTSLPGLVAAKV-G--SNVTLTDDSNRIEVLKNMRRVCEMNKL------NCRVMGLTWGFLDASIFDL 138 (241)
Q Consensus 68 ~~~~~~VLElGcGtGl~sl~la~~-g--~~V~~tD~~~~~~~l~~~~~n~~~n~~------~~~~~~l~w~~~~~~~~~~ 138 (241)
..++.+|||+|||+|..+..+++. | .+|+++|+++ .+++.+++|+..++. ++.+...+..... ....
T Consensus 75 ~~~~~~vLDiG~G~G~~~~~la~~~~~~~~v~~vD~s~--~~~~~a~~~~~~~~~~~~~~~~v~~~~~d~~~~~--~~~~ 150 (226)
T 1i1n_A 75 LHEGAKALDVGSGSGILTACFARMVGCTGKVIGIDHIK--ELVDDSVNNVRKDDPTLLSSGRVQLVVGDGRMGY--AEEA 150 (226)
T ss_dssp SCTTCEEEEETCTTSHHHHHHHHHHCTTCEEEEEESCH--HHHHHHHHHHHHHCTHHHHTSSEEEEESCGGGCC--GGGC
T ss_pred CCCCCEEEEEcCCcCHHHHHHHHHhCCCcEEEEEeCCH--HHHHHHHHHHHhhcccccCCCcEEEEECCcccCc--ccCC
Confidence 446789999999999999999986 4 5999999995 699999999887653 5777776665321 1245
Q ss_pred CCcEEEEcCCcCCCccHHHHHHHHHHHhhcCCCeEEEEEeec
Q 026274 139 NPNIILGADVFYDASAFDDLFATITYLLQSSPGSVFITTYHN 180 (241)
Q Consensus 139 ~fDlIl~~dvly~~~~~~~ll~~~~~lL~~~~~~~~~~~~~~ 180 (241)
+||+|++..++.+ +++.+.++|+ +||.++++...
T Consensus 151 ~fD~i~~~~~~~~------~~~~~~~~Lk--pgG~lv~~~~~ 184 (226)
T 1i1n_A 151 PYDAIHVGAAAPV------VPQALIDQLK--PGGRLILPVGP 184 (226)
T ss_dssp CEEEEEECSBBSS------CCHHHHHTEE--EEEEEEEEESC
T ss_pred CcCEEEECCchHH------HHHHHHHhcC--CCcEEEEEEec
Confidence 7999998877754 3467788998 67777777544
|
| >3uwp_A Histone-lysine N-methyltransferase, H3 lysine-79; epigenetics, tubercidin, structu genomics, structural genomics consortium, SGC; HET: 5ID; 2.05A {Homo sapiens} PDB: 4eqz_A* 3sx0_A* 4er0_A* 4er7_A* 1nw3_A* 4er6_A* 4er5_A* 3qow_A* 3qox_A* 4ek9_A* 4ekg_A* 4eki_A* 4er3_A* 3sr4_A* | Back alignment and structure |
|---|
Probab=99.14 E-value=1.2e-10 Score=104.56 Aligned_cols=113 Identities=10% Similarity=0.022 Sum_probs=78.9
Q ss_pred HHHHhccCCCCCCeEEEecCCCCHHHHHHHHh-CC-EEEEEcCCCcHHHHHHHHHHH-------HHcC---CceEEEEee
Q 026274 60 EYVWQQRYRFSGANVVELGAGTSLPGLVAAKV-GS-NVTLTDDSNRIEVLKNMRRVC-------EMNK---LNCRVMGLT 127 (241)
Q Consensus 60 ~~l~~~~~~~~~~~VLElGcGtGl~sl~la~~-g~-~V~~tD~~~~~~~l~~~~~n~-------~~n~---~~~~~~~l~ 127 (241)
..+.......++.+|||||||+|.+.+.+|+. |+ +|+|+|+++ ++++.+++|+ +.++ .++.+...|
T Consensus 163 ~~il~~l~l~~gd~VLDLGCGtG~l~l~lA~~~g~~kVvGIDiS~--~~lelAr~n~e~frkr~~~~Gl~~~rVefi~GD 240 (438)
T 3uwp_A 163 AQMIDEIKMTDDDLFVDLGSGVGQVVLQVAAATNCKHHYGVEKAD--IPAKYAETMDREFRKWMKWYGKKHAEYTLERGD 240 (438)
T ss_dssp HHHHHHHCCCTTCEEEEESCTTSHHHHHHHHHCCCSEEEEEECCH--HHHHHHHHHHHHHHHHHHHHTBCCCEEEEEECC
T ss_pred HHHHHhcCCCCCCEEEEeCCCCCHHHHHHHHHCCCCEEEEEeCCH--HHHHHHHHHHHHHHHHHHHhCCCCCCeEEEECc
Confidence 33333334557889999999999999999864 66 599999995 6888887765 3344 357777766
Q ss_pred cCCCCcCcCCCCCcEEEEcCCcCCCccHHHHHHHHHHHhhcCCCeEEEEE
Q 026274 128 WGFLDASIFDLNPNIILGADVFYDASAFDDLFATITYLLQSSPGSVFITT 177 (241)
Q Consensus 128 w~~~~~~~~~~~fDlIl~~dvly~~~~~~~ll~~~~~lL~~~~~~~~~~~ 177 (241)
..+......-..||+|+++.++| .++....+..+.+.|+ |||.|++.
T Consensus 241 ~~~lp~~d~~~~aDVVf~Nn~~F-~pdl~~aL~Ei~RvLK--PGGrIVss 287 (438)
T 3uwp_A 241 FLSEEWRERIANTSVIFVNNFAF-GPEVDHQLKERFANMK--EGGRIVSS 287 (438)
T ss_dssp TTSHHHHHHHHTCSEEEECCTTC-CHHHHHHHHHHHTTSC--TTCEEEES
T ss_pred ccCCccccccCCccEEEEccccc-CchHHHHHHHHHHcCC--CCcEEEEe
Confidence 65432110003699999987765 4566677778889998 67777655
|
| >2nyu_A Putative ribosomal RNA methyltransferase 2; SAM, structural genomics, structural genomics consortium, SGC; HET: SAM; 1.76A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.14 E-value=9.3e-10 Score=88.22 Aligned_cols=112 Identities=16% Similarity=0.076 Sum_probs=72.3
Q ss_pred cHHHHHHHHHhccCCCCCCeEEEecCCCCHHHHHHHHh-C----------CEEEEEcCCCcHHHHHHHHHHHHHcCCceE
Q 026274 54 CSVILAEYVWQQRYRFSGANVVELGAGTSLPGLVAAKV-G----------SNVTLTDDSNRIEVLKNMRRVCEMNKLNCR 122 (241)
Q Consensus 54 ~s~~L~~~l~~~~~~~~~~~VLElGcGtGl~sl~la~~-g----------~~V~~tD~~~~~~~l~~~~~n~~~n~~~~~ 122 (241)
+++.|.+.........++.+|||||||+|.+++.+++. + .+|+++|+++. + .-..++
T Consensus 6 ~~~kl~~l~~~~~~~~~~~~vLDlGcG~G~~~~~la~~~~~~~~~~~~~~~~v~~vD~s~~--~----------~~~~~~ 73 (196)
T 2nyu_A 6 SAFKLLEVNERHQILRPGLRVLDCGAAPGAWSQVAVQKVNAAGTDPSSPVGFVLGVDLLHI--F----------PLEGAT 73 (196)
T ss_dssp HHHHHHHHHHHHCCCCTTCEEEEETCCSCHHHHHHHHHTTTTCCCTTSCCCEEEEECSSCC--C----------CCTTCE
T ss_pred HHHHHHHHHHhcCCCCCCCEEEEeCCCCCHHHHHHHHHhccccccccCCCceEEEEechhc--c----------cCCCCe
Confidence 44556565555444456889999999999999999987 4 68999999972 1 011344
Q ss_pred EE-EeecCCCCc------CcCCCCCcEEEEcCCcCCC----ccH-------HHHHHHHHHHhhcCCCeEEEEEee
Q 026274 123 VM-GLTWGFLDA------SIFDLNPNIILGADVFYDA----SAF-------DDLFATITYLLQSSPGSVFITTYH 179 (241)
Q Consensus 123 ~~-~l~w~~~~~------~~~~~~fDlIl~~dvly~~----~~~-------~~ll~~~~~lL~~~~~~~~~~~~~ 179 (241)
+. ..++.+... ...+.+||+|++.-++... .+. ..+++.+.++|+ |||.+++...
T Consensus 74 ~~~~~d~~~~~~~~~~~~~~~~~~fD~V~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~Lk--pgG~lv~~~~ 146 (196)
T 2nyu_A 74 FLCPADVTDPRTSQRILEVLPGRRADVILSDMAPNATGFRDLDHDRLISLCLTLLSVTPDILQ--PGGTFLCKTW 146 (196)
T ss_dssp EECSCCTTSHHHHHHHHHHSGGGCEEEEEECCCCCCCSCHHHHHHHHHHHHHHHHHHHHHHEE--EEEEEEEEEC
T ss_pred EEEeccCCCHHHHHHHHHhcCCCCCcEEEeCCCCCCCCCcccCHHHHHHHHHHHHHHHHHHhc--CCCEEEEEec
Confidence 44 444432210 0113479999986544332 111 478899999998 6676666533
|
| >2bm8_A Cephalosporin hydroxylase CMCI; cephamycin biosynthesis; 2.5A {Streptomyces clavuligerus} SCOP: c.66.1.50 PDB: 2bm9_A* 2br5_A* 2br4_A* 2br3_A* | Back alignment and structure |
|---|
Probab=99.14 E-value=7.3e-11 Score=98.72 Aligned_cols=119 Identities=14% Similarity=0.036 Sum_probs=79.6
Q ss_pred CCCeEEEecCCCCHHHHHHHHh------CCEEEEEcCCCcHHHHHHHHHHHHHcCCceEEEEeecCCC--CcCcCCCCCc
Q 026274 70 SGANVVELGAGTSLPGLVAAKV------GSNVTLTDDSNRIEVLKNMRRVCEMNKLNCRVMGLTWGFL--DASIFDLNPN 141 (241)
Q Consensus 70 ~~~~VLElGcGtGl~sl~la~~------g~~V~~tD~~~~~~~l~~~~~n~~~n~~~~~~~~l~w~~~--~~~~~~~~fD 141 (241)
++.+|||||||+|..++.+++. +++|+++|+++ ++++.++ ....++++...|+.+. .......+||
T Consensus 81 ~~~~VLDiG~GtG~~t~~la~~~~~~~~~~~V~gvD~s~--~~l~~a~----~~~~~v~~~~gD~~~~~~l~~~~~~~fD 154 (236)
T 2bm8_A 81 RPRTIVELGVYNGGSLAWFRDLTKIMGIDCQVIGIDRDL--SRCQIPA----SDMENITLHQGDCSDLTTFEHLREMAHP 154 (236)
T ss_dssp CCSEEEEECCTTSHHHHHHHHHHHHTTCCCEEEEEESCC--TTCCCCG----GGCTTEEEEECCSSCSGGGGGGSSSCSS
T ss_pred CCCEEEEEeCCCCHHHHHHHHhhhhcCCCCEEEEEeCCh--HHHHHHh----ccCCceEEEECcchhHHHHHhhccCCCC
Confidence 4679999999999999999987 57999999997 4776665 1234677777777653 1111223799
Q ss_pred EEEEcCCcCCCccHHHHHHHHHH-HhhcCCCeEEEEEe----eccCchhHHHHHHHHc--CCEEE
Q 026274 142 IILGADVFYDASAFDDLFATITY-LLQSSPGSVFITTY----HNRSGHHLIEFLMVKW--GLKCV 199 (241)
Q Consensus 142 lIl~~dvly~~~~~~~ll~~~~~-lL~~~~~~~~~~~~----~~r~~~~~~~~~~~~~--g~~~~ 199 (241)
+|++... + .....+++.+.+ +|+ +||.+++.. ........+..++++. +|...
T Consensus 155 ~I~~d~~--~-~~~~~~l~~~~r~~Lk--pGG~lv~~d~~~~~~~~~~~~~~~~l~~~~~~f~~~ 214 (236)
T 2bm8_A 155 LIFIDNA--H-ANTFNIMKWAVDHLLE--EGDYFIIEDMIPYWYRYAPQLFSEYLGAFRDVLSMD 214 (236)
T ss_dssp EEEEESS--C-SSHHHHHHHHHHHTCC--TTCEEEECSCHHHHHHHCHHHHHHHHHTTTTTEEEE
T ss_pred EEEECCc--h-HhHHHHHHHHHHhhCC--CCCEEEEEeCcccccccCHHHHHHHHHhCcccEEEc
Confidence 9987544 2 367788888886 998 677777642 1111122344455555 56654
|
| >3ajd_A Putative methyltransferase MJ0026; tRNA, M5C, rossmann fold, structural genomics, riken structu genomics/proteomics initiative; 1.27A {Methanocaldococcus jannaschii} PDB: 3a4t_A | Back alignment and structure |
|---|
Probab=99.13 E-value=4.4e-10 Score=95.92 Aligned_cols=141 Identities=10% Similarity=0.059 Sum_probs=94.2
Q ss_pred ccHHHHHHHHHhccCCCCCCeEEEecCCCCHHHHHHHHh--C-CEEEEEcCCCcHHHHHHHHHHHHHcCC-ceEEEEeec
Q 026274 53 PCSVILAEYVWQQRYRFSGANVVELGAGTSLPGLVAAKV--G-SNVTLTDDSNRIEVLKNMRRVCEMNKL-NCRVMGLTW 128 (241)
Q Consensus 53 ~~s~~L~~~l~~~~~~~~~~~VLElGcGtGl~sl~la~~--g-~~V~~tD~~~~~~~l~~~~~n~~~n~~-~~~~~~l~w 128 (241)
.++..++..+. ..++.+|||+|||+|..++.+++. + .+|+++|+++ .+++.+++|++.++. ++.+...|.
T Consensus 70 ~~s~l~~~~l~----~~~g~~VLDlgaG~G~~t~~la~~~~~~~~v~avD~~~--~~l~~~~~~~~~~g~~~v~~~~~D~ 143 (274)
T 3ajd_A 70 ISSMIPPIVLN----PREDDFILDMCAAPGGKTTHLAQLMKNKGTIVAVEISK--TRTKALKSNINRMGVLNTIIINADM 143 (274)
T ss_dssp SGGGHHHHHHC----CCTTCEEEETTCTTCHHHHHHHHHTTTCSEEEEEESCH--HHHHHHHHHHHHTTCCSEEEEESCH
T ss_pred HHHHHHHHHhC----CCCcCEEEEeCCCccHHHHHHHHHcCCCCEEEEECCCH--HHHHHHHHHHHHhCCCcEEEEeCCh
Confidence 44555555542 346789999999999999999984 4 5999999995 699999999998887 566766655
Q ss_pred CCCCcCc--CCCCCcEEEEcCCcCC------------------CccHHHHHHHHHHHhhcCCCeEEEEEe---eccCchh
Q 026274 129 GFLDASI--FDLNPNIILGADVFYD------------------ASAFDDLFATITYLLQSSPGSVFITTY---HNRSGHH 185 (241)
Q Consensus 129 ~~~~~~~--~~~~fDlIl~~dvly~------------------~~~~~~ll~~~~~lL~~~~~~~~~~~~---~~r~~~~ 185 (241)
.+..... ...+||+|++..+... ......+++.+.++|+ +||.++++. .......
T Consensus 144 ~~~~~~~~~~~~~fD~Vl~d~Pcs~~g~~~~~p~~~~~~~~~~~~~~~~~l~~~~~~Lk--pgG~lv~stcs~~~~ene~ 221 (274)
T 3ajd_A 144 RKYKDYLLKNEIFFDKILLDAPCSGNIIKDKNRNVSEEDIKYCSLRQKELIDIGIDLLK--KDGELVYSTCSMEVEENEE 221 (274)
T ss_dssp HHHHHHHHHTTCCEEEEEEEECCC------------HHHHTGGGTCHHHHHHHHHHHEE--EEEEEEEEESCCCTTSSHH
T ss_pred HhcchhhhhccccCCEEEEcCCCCCCcccccCCCCCHHHHHHHHHHHHHHHHHHHHhCC--CCCEEEEEECCCChHHhHH
Confidence 4321100 1458999997633322 1456789999999998 556555442 2223344
Q ss_pred HHHHHHHH-cCCEEEEE
Q 026274 186 LIEFLMVK-WGLKCVKL 201 (241)
Q Consensus 186 ~~~~~~~~-~g~~~~~i 201 (241)
.+..++++ .+|+...+
T Consensus 222 ~v~~~l~~~~~~~~~~~ 238 (274)
T 3ajd_A 222 VIKYILQKRNDVELIII 238 (274)
T ss_dssp HHHHHHHHCSSEEEECC
T ss_pred HHHHHHHhCCCcEEecC
Confidence 55555544 46666544
|
| >3m6w_A RRNA methylase; rRNA methyltransferase, 5-methylcytidine, RSMF, adoMet, MULT specific, methyltransferase, transferase; HET: CXM SAM; 1.30A {Thermus thermophilus} PDB: 3m6v_A* 3m6u_A* 3m6x_A* | Back alignment and structure |
|---|
Probab=99.12 E-value=4.5e-10 Score=102.75 Aligned_cols=140 Identities=14% Similarity=0.120 Sum_probs=95.3
Q ss_pred ccHHHHHHHHHhccCCCCCCeEEEecCCCCHHHHHHHHh-C--CEEEEEcCCCcHHHHHHHHHHHHHcCCceEEEEeecC
Q 026274 53 PCSVILAEYVWQQRYRFSGANVVELGAGTSLPGLVAAKV-G--SNVTLTDDSNRIEVLKNMRRVCEMNKLNCRVMGLTWG 129 (241)
Q Consensus 53 ~~s~~L~~~l~~~~~~~~~~~VLElGcGtGl~sl~la~~-g--~~V~~tD~~~~~~~l~~~~~n~~~n~~~~~~~~l~w~ 129 (241)
+++.+++..+. ..++.+|||+|||+|..++.+|+. + .+|+++|+++ .+++.+++|++.+++.+.+...|..
T Consensus 88 ~ss~l~a~~L~----~~~g~~VLDlgaGpG~kt~~LA~~~~~~g~V~AvDis~--~~l~~a~~n~~r~G~~v~~~~~Da~ 161 (464)
T 3m6w_A 88 PSAQAVGVLLD----PKPGERVLDLAAAPGGKTTHLAARMGGKGLLLANEVDG--KRVRGLLENVERWGAPLAVTQAPPR 161 (464)
T ss_dssp TTTHHHHHHHC----CCTTCEEEESSCTTCHHHHHHHHHTTTCSEEEEECSCH--HHHHHHHHHHHHHCCCCEEECSCHH
T ss_pred HHHHHHHHhcC----cCCCCEEEEEcCCcCHHHHHHHHhCCCCCEEEEEECCH--HHHHHHHHHHHHcCCeEEEEECCHH
Confidence 45566666553 346789999999999999999976 2 4899999995 7999999999999887666555443
Q ss_pred CCCcCcCCCCCcEEEEcCCc------CCCcc----------------HHHHHHHHHHHhhcCCCeEEEEE---eeccCch
Q 026274 130 FLDASIFDLNPNIILGADVF------YDASA----------------FDDLFATITYLLQSSPGSVFITT---YHNRSGH 184 (241)
Q Consensus 130 ~~~~~~~~~~fDlIl~~dvl------y~~~~----------------~~~ll~~~~~lL~~~~~~~~~~~---~~~r~~~ 184 (241)
+.. ...+.+||+|++..+. ...++ ...+++.+.++|+ |||.++.+ .......
T Consensus 162 ~l~-~~~~~~FD~Il~D~PcSg~G~~rr~pd~~~~~~~~~~~~l~~~Q~~iL~~a~~~Lk--pGG~LvysTCs~~~eEne 238 (464)
T 3m6w_A 162 ALA-EAFGTYFHRVLLDAPCSGEGMFRKDREAARHWGPSAPKRMAEVQKALLAQASRLLG--PGGVLVYSTCTFAPEENE 238 (464)
T ss_dssp HHH-HHHCSCEEEEEEECCCCCGGGTTTCTTSGGGCCTTHHHHHHHHHHHHHHHHHTTEE--EEEEEEEEESCCCGGGTH
T ss_pred Hhh-hhccccCCEEEECCCcCCccccccChHHhhhcCHHHHHHHHHHHHHHHHHHHHhcC--CCcEEEEEeccCchhcCH
Confidence 321 1134689999963322 11111 2678888889998 55655443 2333445
Q ss_pred hHHHHHHHHc-CCEEEEE
Q 026274 185 HLIEFLMVKW-GLKCVKL 201 (241)
Q Consensus 185 ~~~~~~~~~~-g~~~~~i 201 (241)
..+..+++++ +|+...+
T Consensus 239 ~vv~~~l~~~~~~~l~~~ 256 (464)
T 3m6w_A 239 GVVAHFLKAHPEFRLEDA 256 (464)
T ss_dssp HHHHHHHHHCTTEEEECC
T ss_pred HHHHHHHHHCCCcEEEec
Confidence 5667777777 6877665
|
| >1r18_A Protein-L-isoaspartate(D-aspartate)-O-methyltrans; methyltransferase, isomerization, protein repair, S-adenosyl homocysteine; HET: SAH; 2.20A {Drosophila melanogaster} SCOP: c.66.1.7 | Back alignment and structure |
|---|
Probab=99.11 E-value=6e-10 Score=91.94 Aligned_cols=101 Identities=11% Similarity=0.063 Sum_probs=76.9
Q ss_pred CCCCCeEEEecCCCCHHHHHHHHh-C-------CEEEEEcCCCcHHHHHHHHHHHHHcC------CceEEEEeecCCCCc
Q 026274 68 RFSGANVVELGAGTSLPGLVAAKV-G-------SNVTLTDDSNRIEVLKNMRRVCEMNK------LNCRVMGLTWGFLDA 133 (241)
Q Consensus 68 ~~~~~~VLElGcGtGl~sl~la~~-g-------~~V~~tD~~~~~~~l~~~~~n~~~n~------~~~~~~~l~w~~~~~ 133 (241)
..++.+|||+|||+|..+..+++. + .+|+++|+++ ++++.+++++..++ .++.+...+..+...
T Consensus 82 ~~~~~~VLdiG~G~G~~~~~la~~~~~~~~~~~~~v~~vD~~~--~~~~~a~~~~~~~~~~~~~~~~v~~~~~d~~~~~~ 159 (227)
T 1r18_A 82 LKPGARILDVGSGSGYLTACFYRYIKAKGVDADTRIVGIEHQA--ELVRRSKANLNTDDRSMLDSGQLLIVEGDGRKGYP 159 (227)
T ss_dssp CCTTCEEEEESCTTSHHHHHHHHHHHHSCCCTTCEEEEEESCH--HHHHHHHHHHHHHHHHHHHHTSEEEEESCGGGCCG
T ss_pred CCCCCEEEEECCCccHHHHHHHHhcccccCCccCEEEEEEcCH--HHHHHHHHHHHhcCccccCCCceEEEECCcccCCC
Confidence 446789999999999999999884 4 4999999995 79999999887654 356677666654211
Q ss_pred CcCCCCCcEEEEcCCcCCCccHHHHHHHHHHHhhcCCCeEEEEEeec
Q 026274 134 SIFDLNPNIILGADVFYDASAFDDLFATITYLLQSSPGSVFITTYHN 180 (241)
Q Consensus 134 ~~~~~~fDlIl~~dvly~~~~~~~ll~~~~~lL~~~~~~~~~~~~~~ 180 (241)
...+||+|++..++.+.. +.+.++|+ +||.+++....
T Consensus 160 --~~~~fD~I~~~~~~~~~~------~~~~~~Lk--pgG~lvi~~~~ 196 (227)
T 1r18_A 160 --PNAPYNAIHVGAAAPDTP------TELINQLA--SGGRLIVPVGP 196 (227)
T ss_dssp --GGCSEEEEEECSCBSSCC------HHHHHTEE--EEEEEEEEESC
T ss_pred --cCCCccEEEECCchHHHH------HHHHHHhc--CCCEEEEEEec
Confidence 125799999998887643 67888998 67887777654
|
| >3m4x_A NOL1/NOP2/SUN family protein; mtase domain, PUA domain, RRM motif, transferase; 2.28A {Enterococcus faecium} | Back alignment and structure |
|---|
Probab=99.09 E-value=9.7e-10 Score=100.37 Aligned_cols=140 Identities=13% Similarity=0.090 Sum_probs=95.9
Q ss_pred ccHHHHHHHHHhccCCCCCCeEEEecCCCCHHHHHHHHh---CCEEEEEcCCCcHHHHHHHHHHHHHcCCc-eEEEEeec
Q 026274 53 PCSVILAEYVWQQRYRFSGANVVELGAGTSLPGLVAAKV---GSNVTLTDDSNRIEVLKNMRRVCEMNKLN-CRVMGLTW 128 (241)
Q Consensus 53 ~~s~~L~~~l~~~~~~~~~~~VLElGcGtGl~sl~la~~---g~~V~~tD~~~~~~~l~~~~~n~~~n~~~-~~~~~l~w 128 (241)
+++.+++..+. ...+.+|||+|||+|..++.+|+. +.+|+++|+++ .+++.+++|++.+++. +.+...|.
T Consensus 92 ~ss~l~~~~L~----~~~g~~VLDlcaGpGgkt~~lA~~~~~~g~V~AvDis~--~rl~~~~~n~~r~g~~nv~v~~~Da 165 (456)
T 3m4x_A 92 PSAMIVGTAAA----AKPGEKVLDLCAAPGGKSTQLAAQMKGKGLLVTNEIFP--KRAKILSENIERWGVSNAIVTNHAP 165 (456)
T ss_dssp TTTHHHHHHHC----CCTTCEEEESSCTTCHHHHHHHHHHTTCSEEEEECSSH--HHHHHHHHHHHHHTCSSEEEECCCH
T ss_pred HHHHHHHHHcC----CCCCCEEEEECCCcCHHHHHHHHHcCCCCEEEEEeCCH--HHHHHHHHHHHHcCCCceEEEeCCH
Confidence 55666666653 346789999999999999999875 24899999995 6999999999998874 55555443
Q ss_pred CCCCcCcCCCCCcEEEEcCCcCC------Cc----------------cHHHHHHHHHHHhhcCCCeEEEE-E--eeccCc
Q 026274 129 GFLDASIFDLNPNIILGADVFYD------AS----------------AFDDLFATITYLLQSSPGSVFIT-T--YHNRSG 183 (241)
Q Consensus 129 ~~~~~~~~~~~fDlIl~~dvly~------~~----------------~~~~ll~~~~~lL~~~~~~~~~~-~--~~~r~~ 183 (241)
.+.. ...+.+||+|++..+... .+ ....+++.+.++|+ |||.++. + ......
T Consensus 166 ~~l~-~~~~~~FD~Il~DaPCSg~G~~rr~p~~~~~~~~~~~~~l~~~Q~~iL~~a~~~Lk--pGG~LvYsTCs~~~eEn 242 (456)
T 3m4x_A 166 AELV-PHFSGFFDRIVVDAPCSGEGMFRKDPNAIKEWTEESPLYCQKRQQEILSSAIKMLK--NKGQLIYSTCTFAPEEN 242 (456)
T ss_dssp HHHH-HHHTTCEEEEEEECCCCCGGGTTTCHHHHHHCCTTHHHHHHHHHHHHHHHHHHTEE--EEEEEEEEESCCCGGGT
T ss_pred HHhh-hhccccCCEEEECCCCCCccccccCHHHhhhcCHHHHHHHHHHHHHHHHHHHHhcC--CCcEEEEEEeecccccC
Confidence 3221 113468999997544211 11 12377888889998 5555443 3 233344
Q ss_pred hhHHHHHHHHcCCEEEEE
Q 026274 184 HHLIEFLMVKWGLKCVKL 201 (241)
Q Consensus 184 ~~~~~~~~~~~g~~~~~i 201 (241)
...+..++++++|++..+
T Consensus 243 e~vv~~~l~~~~~~l~~~ 260 (456)
T 3m4x_A 243 EEIISWLVENYPVTIEEI 260 (456)
T ss_dssp HHHHHHHHHHSSEEEECC
T ss_pred HHHHHHHHHhCCCEEEec
Confidence 556777888888777665
|
| >2yxl_A PH0851 protein, 450AA long hypothetical FMU protein; FMU-homolog, methyltransferase, structural genomics, NPPSFA; HET: SFG; 2.55A {Pyrococcus horikoshii} | Back alignment and structure |
|---|
Probab=99.09 E-value=6e-10 Score=101.68 Aligned_cols=141 Identities=14% Similarity=0.134 Sum_probs=94.2
Q ss_pred ccHHHHHHHHHhccCCCCCCeEEEecCCCCHHHHHHHHh--C-CEEEEEcCCCcHHHHHHHHHHHHHcCC-ceEEEEeec
Q 026274 53 PCSVILAEYVWQQRYRFSGANVVELGAGTSLPGLVAAKV--G-SNVTLTDDSNRIEVLKNMRRVCEMNKL-NCRVMGLTW 128 (241)
Q Consensus 53 ~~s~~L~~~l~~~~~~~~~~~VLElGcGtGl~sl~la~~--g-~~V~~tD~~~~~~~l~~~~~n~~~n~~-~~~~~~l~w 128 (241)
.++..++..+. ...+.+|||+|||+|..++.+++. + .+|+++|+++ .+++.+++|++.++. ++.+...|.
T Consensus 246 ~~s~l~~~~l~----~~~g~~VLDlgaG~G~~t~~la~~~~~~~~v~a~D~s~--~~l~~~~~~~~~~g~~~v~~~~~D~ 319 (450)
T 2yxl_A 246 EASAVASIVLD----PKPGETVVDLAAAPGGKTTHLAELMKNKGKIYAFDVDK--MRMKRLKDFVKRMGIKIVKPLVKDA 319 (450)
T ss_dssp HHHHHHHHHHC----CCTTCEEEESSCTTCHHHHHHHHHTTTCSEEEEECSCH--HHHHHHHHHHHHTTCCSEEEECSCT
T ss_pred chhHHHHHhcC----CCCcCEEEEeCCCccHHHHHHHHHcCCCCEEEEEcCCH--HHHHHHHHHHHHcCCCcEEEEEcCh
Confidence 44555555542 345779999999999999999985 3 5899999995 699999999998887 577766666
Q ss_pred CCCCcCcCCCCCcEEEEc------CCcCCCccH----------------HHHHHHHHHHhhcCCCeEEEEE-e--eccCc
Q 026274 129 GFLDASIFDLNPNIILGA------DVFYDASAF----------------DDLFATITYLLQSSPGSVFITT-Y--HNRSG 183 (241)
Q Consensus 129 ~~~~~~~~~~~fDlIl~~------dvly~~~~~----------------~~ll~~~~~lL~~~~~~~~~~~-~--~~r~~ 183 (241)
.+......+.+||+|++. .++...++. ..+++.+.++|+ |||.++++ + .....
T Consensus 320 ~~~~~~~~~~~fD~Vl~D~Pcsg~g~~~~~pd~~~~~~~~~~~~l~~~q~~iL~~a~~~Lk--pGG~lvy~tcs~~~~en 397 (450)
T 2yxl_A 320 RKAPEIIGEEVADKVLLDAPCTSSGTIGKNPELRWRLREDKINEMSQLQRELLESAARLVK--PGGRLLYTTCSIFKEEN 397 (450)
T ss_dssp TCCSSSSCSSCEEEEEEECCCCCGGGTTTSTTHHHHCCTTSHHHHHHHHHHHHHHHHTTEE--EEEEEEEEESCCCGGGT
T ss_pred hhcchhhccCCCCEEEEcCCCCCCeeeccChhhhhhCCHHHHHHHHHHHHHHHHHHHHhcC--CCcEEEEEeCCCChhhH
Confidence 544222223579999963 223222222 578888999998 55655433 2 22222
Q ss_pred hhHHHHHHHHc-CCEEEEE
Q 026274 184 HHLIEFLMVKW-GLKCVKL 201 (241)
Q Consensus 184 ~~~~~~~~~~~-g~~~~~i 201 (241)
...+..+++++ +|+...+
T Consensus 398 e~~v~~~l~~~~~~~~~~~ 416 (450)
T 2yxl_A 398 EKNIRWFLNVHPEFKLVPL 416 (450)
T ss_dssp HHHHHHHHHHCSSCEECCC
T ss_pred HHHHHHHHHhCCCCEEeec
Confidence 34455566665 7887655
|
| >1xj5_A Spermidine synthase 1; structural genomics, protein structure initiative, CESG, AT1G23820, putrescine aminopropyl transferase, SPDS1; 2.70A {Arabidopsis thaliana} SCOP: c.66.1.17 PDB: 2q41_A | Back alignment and structure |
|---|
Probab=99.09 E-value=1.8e-10 Score=101.26 Aligned_cols=104 Identities=12% Similarity=0.068 Sum_probs=77.3
Q ss_pred CCCeEEEecCCCCHHHHHHHHh--CCEEEEEcCCCcHHHHHHHHHHHHH-----cCCceEEEEeecCCCCcCcCCCCCcE
Q 026274 70 SGANVVELGAGTSLPGLVAAKV--GSNVTLTDDSNRIEVLKNMRRVCEM-----NKLNCRVMGLTWGFLDASIFDLNPNI 142 (241)
Q Consensus 70 ~~~~VLElGcGtGl~sl~la~~--g~~V~~tD~~~~~~~l~~~~~n~~~-----n~~~~~~~~l~w~~~~~~~~~~~fDl 142 (241)
++++|||||||+|.++..+++. +.+|+++|+++ ++++.+++|+.. +..++++...|+.+......+.+||+
T Consensus 120 ~~~~VLdIG~G~G~~a~~la~~~~~~~V~~VDis~--~~l~~Ar~~~~~~~~gl~~~rv~~~~~D~~~~l~~~~~~~fDl 197 (334)
T 1xj5_A 120 NPKKVLVIGGGDGGVLREVARHASIEQIDMCEIDK--MVVDVSKQFFPDVAIGYEDPRVNLVIGDGVAFLKNAAEGSYDA 197 (334)
T ss_dssp CCCEEEEETCSSSHHHHHHTTCTTCCEEEEEESCH--HHHHHHHHHCHHHHGGGGSTTEEEEESCHHHHHHTSCTTCEEE
T ss_pred CCCEEEEECCCccHHHHHHHHcCCCCEEEEEECCH--HHHHHHHHHHHhhccccCCCcEEEEECCHHHHHHhccCCCccE
Confidence 5679999999999999999987 35999999995 799999998764 23467777777654322222458999
Q ss_pred EEEcCC--cCCCcc--HHHHHHHHHHHhhcCCCeEEEEE
Q 026274 143 ILGADV--FYDASA--FDDLFATITYLLQSSPGSVFITT 177 (241)
Q Consensus 143 Il~~dv--ly~~~~--~~~ll~~~~~lL~~~~~~~~~~~ 177 (241)
|++.-. ...... ...+++.+.++|+ +||++++.
T Consensus 198 Ii~d~~~p~~~~~~l~~~~~l~~~~~~Lk--pgG~lv~~ 234 (334)
T 1xj5_A 198 VIVDSSDPIGPAKELFEKPFFQSVARALR--PGGVVCTQ 234 (334)
T ss_dssp EEECCCCTTSGGGGGGSHHHHHHHHHHEE--EEEEEEEE
T ss_pred EEECCCCccCcchhhhHHHHHHHHHHhcC--CCcEEEEe
Confidence 997432 222222 4789999999998 67888775
|
| >2f8l_A Hypothetical protein LMO1582; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE SAM; 2.20A {Listeria monocytogenes} SCOP: c.66.1.45 | Back alignment and structure |
|---|
Probab=99.08 E-value=4.2e-09 Score=92.59 Aligned_cols=101 Identities=4% Similarity=-0.075 Sum_probs=75.3
Q ss_pred CCCeEEEecCCCCHHHHHHHHhC-------CEEEEEcCCCcHHHHHHHHHHHHHcCCceEEEEeecCCCCcCcCCCCCcE
Q 026274 70 SGANVVELGAGTSLPGLVAAKVG-------SNVTLTDDSNRIEVLKNMRRVCEMNKLNCRVMGLTWGFLDASIFDLNPNI 142 (241)
Q Consensus 70 ~~~~VLElGcGtGl~sl~la~~g-------~~V~~tD~~~~~~~l~~~~~n~~~n~~~~~~~~l~w~~~~~~~~~~~fDl 142 (241)
++.+|||+|||+|.+.+.+++.. .+++++|+++ .+++.++.|+..++.++.+...|+.. .....+||+
T Consensus 130 ~~~~VlDp~cGsG~~l~~~~~~~~~~~~~~~~v~GiDi~~--~~~~~a~~n~~~~g~~~~i~~~D~l~---~~~~~~fD~ 204 (344)
T 2f8l_A 130 KNVSILDPACGTANLLTTVINQLELKGDVDVHASGVDVDD--LLISLALVGADLQRQKMTLLHQDGLA---NLLVDPVDV 204 (344)
T ss_dssp SEEEEEETTCTTSHHHHHHHHHHHTTSSCEEEEEEEESCH--HHHHHHHHHHHHHTCCCEEEESCTTS---CCCCCCEEE
T ss_pred CCCEEEeCCCCccHHHHHHHHHHHHhcCCCceEEEEECCH--HHHHHHHHHHHhCCCCceEEECCCCC---ccccCCccE
Confidence 56789999999999999888763 6899999995 79999999999888877776665543 223468999
Q ss_pred EEEcCCcCCCcc-----------------H-HHHHHHHHHHhhcCCCeEEEEE
Q 026274 143 ILGADVFYDASA-----------------F-DDLFATITYLLQSSPGSVFITT 177 (241)
Q Consensus 143 Il~~dvly~~~~-----------------~-~~ll~~~~~lL~~~~~~~~~~~ 177 (241)
|+++.++.+... . ..++..+.++|++ +|.+++.
T Consensus 205 Ii~NPPfg~~~~~~~~~~~~~~~~~g~~~~~~~~l~~~~~~Lk~--gG~~~~v 255 (344)
T 2f8l_A 205 VISDLPVGYYPDDENAKTFELCREEGHSFAHFLFIEQGMRYTKP--GGYLFFL 255 (344)
T ss_dssp EEEECCCSEESCHHHHTTSTTCCSSSCEEHHHHHHHHHHHTEEE--EEEEEEE
T ss_pred EEECCCCCCcCchhhhhhccccCCCCcchHHHHHHHHHHHHhCC--CCEEEEE
Confidence 999998633211 1 2578888899984 4544333
|
| >2dul_A N(2),N(2)-dimethylguanosine tRNA methyltransferas; tRNA modification enzyme, guanine 26, N(2),N(2)-dimethyltran structural genomics; 1.90A {Pyrococcus horikoshii} SCOP: c.66.1.58 PDB: 2ejt_A* 2eju_A* 2ytz_A* | Back alignment and structure |
|---|
Probab=99.07 E-value=3.7e-10 Score=100.92 Aligned_cols=100 Identities=18% Similarity=0.040 Sum_probs=76.5
Q ss_pred CCCeEEEecCCCCHHHHHHHHh-C-CEEEEEcCCCcHHHHHHHHHHHHHc---------------CCc-eEEEEeecCCC
Q 026274 70 SGANVVELGAGTSLPGLVAAKV-G-SNVTLTDDSNRIEVLKNMRRVCEMN---------------KLN-CRVMGLTWGFL 131 (241)
Q Consensus 70 ~~~~VLElGcGtGl~sl~la~~-g-~~V~~tD~~~~~~~l~~~~~n~~~n---------------~~~-~~~~~l~w~~~ 131 (241)
++.+|||+|||+|..|+.+++. + .+|+++|+++ ++++.+++|++.| ++. +++...|..+.
T Consensus 47 ~~~~VLDl~aGtG~~~l~~a~~~~~~~V~avDi~~--~av~~a~~N~~~n~~~~~~~~~~~~~~~gl~~i~v~~~Da~~~ 124 (378)
T 2dul_A 47 NPKIVLDALSATGIRGIRFALETPAEEVWLNDISE--DAYELMKRNVMLNFDGELRESKGRAILKGEKTIVINHDDANRL 124 (378)
T ss_dssp CCSEEEESSCTTSHHHHHHHHHSSCSEEEEEESCH--HHHHHHHHHHHHHCCSCCEECSSEEEEESSSEEEEEESCHHHH
T ss_pred CCCEEEECCCchhHHHHHHHHhCCCCeEEEEECCH--HHHHHHHHHHHHhcccccccccccccccCCCceEEEcCcHHHH
Confidence 6789999999999999999997 5 4899999995 7999999999999 765 66666555433
Q ss_pred CcCcCCCCCcEEEEcCCcCCCccHHHHHHHHHHHhhcCCCeEEEEEe
Q 026274 132 DASIFDLNPNIILGADVFYDASAFDDLFATITYLLQSSPGSVFITTY 178 (241)
Q Consensus 132 ~~~~~~~~fDlIl~~dvly~~~~~~~ll~~~~~lL~~~~~~~~~~~~ 178 (241)
... ...+||+|+ .|+.+ ....+++...++++ ++|++++.+
T Consensus 125 ~~~-~~~~fD~I~-lDP~~---~~~~~l~~a~~~lk--~gG~l~vt~ 164 (378)
T 2dul_A 125 MAE-RHRYFHFID-LDPFG---SPMEFLDTALRSAK--RRGILGVTA 164 (378)
T ss_dssp HHH-STTCEEEEE-ECCSS---CCHHHHHHHHHHEE--EEEEEEEEE
T ss_pred HHh-ccCCCCEEE-eCCCC---CHHHHHHHHHHhcC--CCCEEEEEe
Confidence 211 134799999 56643 34688888888888 566776654
|
| >3lst_A CALO1 methyltransferase; calicheamicin, enediyne, SAH, STRU genomics, PSI-2, protein structure initiative; HET: SAH; 2.40A {Micromonospora echinospora} | Back alignment and structure |
|---|
Probab=99.06 E-value=4.9e-10 Score=98.64 Aligned_cols=123 Identities=12% Similarity=0.098 Sum_probs=85.1
Q ss_pred CCCCeEEEecCCCCHHHHHHHHhCC--EEEEEcCCCcHHHHHHHHHHHHHcC--CceEEEEeecCCCCcCcCCCCCcEEE
Q 026274 69 FSGANVVELGAGTSLPGLVAAKVGS--NVTLTDDSNRIEVLKNMRRVCEMNK--LNCRVMGLTWGFLDASIFDLNPNIIL 144 (241)
Q Consensus 69 ~~~~~VLElGcGtGl~sl~la~~g~--~V~~tD~~~~~~~l~~~~~n~~~n~--~~~~~~~l~w~~~~~~~~~~~fDlIl 144 (241)
..+.+|||+|||+|..+..+++... +++++|++ .++. +.++...+ .++++...|..+ +. + +||+|+
T Consensus 183 ~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~~---~~~~--~~~~~~~~~~~~v~~~~~d~~~---~~-p-~~D~v~ 252 (348)
T 3lst_A 183 PATGTVADVGGGRGGFLLTVLREHPGLQGVLLDRA---EVVA--RHRLDAPDVAGRWKVVEGDFLR---EV-P-HADVHV 252 (348)
T ss_dssp CSSEEEEEETCTTSHHHHHHHHHCTTEEEEEEECH---HHHT--TCCCCCGGGTTSEEEEECCTTT---CC-C-CCSEEE
T ss_pred cCCceEEEECCccCHHHHHHHHHCCCCEEEEecCH---HHhh--cccccccCCCCCeEEEecCCCC---CC-C-CCcEEE
Confidence 3567999999999999999998643 78999985 3554 32222222 347777777652 22 2 899999
Q ss_pred EcCCcCCCccH--HHHHHHHHHHhhcCCCeEEEEEee-c-----------------------cCchhHHHHHHHHcCCEE
Q 026274 145 GADVFYDASAF--DDLFATITYLLQSSPGSVFITTYH-N-----------------------RSGHHLIEFLMVKWGLKC 198 (241)
Q Consensus 145 ~~dvly~~~~~--~~ll~~~~~lL~~~~~~~~~~~~~-~-----------------------r~~~~~~~~~~~~~g~~~ 198 (241)
+..++++.++. ..+++.+.++|+ |||.+++... . ..+......++++.||+.
T Consensus 253 ~~~vlh~~~d~~~~~~L~~~~~~Lk--pgG~l~i~e~~~~~~~~~~~~~~~d~~~~~~~~~~~~t~~e~~~ll~~aGf~~ 330 (348)
T 3lst_A 253 LKRILHNWGDEDSVRILTNCRRVMP--AHGRVLVIDAVVPEGNDAHQSKEMDFMMLAARTGQERTAAELEPLFTAAGLRL 330 (348)
T ss_dssp EESCGGGSCHHHHHHHHHHHHHTCC--TTCEEEEEECCBCSSSSCCHHHHHHHHHHHTTSCCCCBHHHHHHHHHHTTEEE
T ss_pred EehhccCCCHHHHHHHHHHHHHhcC--CCCEEEEEEeccCCCCCcchhhhcChhhhhcCCCcCCCHHHHHHHHHHCCCce
Confidence 99999987776 699999999998 4555544321 1 112233455678889998
Q ss_pred EEEec
Q 026274 199 VKLVD 203 (241)
Q Consensus 199 ~~i~~ 203 (241)
..+..
T Consensus 331 ~~~~~ 335 (348)
T 3lst_A 331 DRVVG 335 (348)
T ss_dssp EEEEE
T ss_pred EEEEE
Confidence 88743
|
| >1p91_A Ribosomal RNA large subunit methyltransferase A; RLMA, RRMA, 23S rRNA, NESG, structural genomics, PSI, protein structure initiative; HET: SAM; 2.80A {Escherichia coli} SCOP: c.66.1.33 | Back alignment and structure |
|---|
Probab=99.05 E-value=1.1e-09 Score=92.51 Aligned_cols=95 Identities=15% Similarity=0.072 Sum_probs=70.9
Q ss_pred CCCCeEEEecCCCCHHHHHHHHh--CCEEEEEcCCCcHHHHHHHHHHHHHcCCceEEEEeecCCCCcCcCCCCCcEEEEc
Q 026274 69 FSGANVVELGAGTSLPGLVAAKV--GSNVTLTDDSNRIEVLKNMRRVCEMNKLNCRVMGLTWGFLDASIFDLNPNIILGA 146 (241)
Q Consensus 69 ~~~~~VLElGcGtGl~sl~la~~--g~~V~~tD~~~~~~~l~~~~~n~~~n~~~~~~~~l~w~~~~~~~~~~~fDlIl~~ 146 (241)
.++.+|||+|||+|..+..+++. +++|+++|+++ ++++.++++. .++.+...++.+. +..+.+||+|++.
T Consensus 84 ~~~~~vLdiG~G~G~~~~~l~~~~~~~~v~~vD~s~--~~~~~a~~~~----~~~~~~~~d~~~~--~~~~~~fD~v~~~ 155 (269)
T 1p91_A 84 DKATAVLDIGCGEGYYTHAFADALPEITTFGLDVSK--VAIKAAAKRY----PQVTFCVASSHRL--PFSDTSMDAIIRI 155 (269)
T ss_dssp TTCCEEEEETCTTSTTHHHHHHTCTTSEEEEEESCH--HHHHHHHHHC----TTSEEEECCTTSC--SBCTTCEEEEEEE
T ss_pred CCCCEEEEECCCCCHHHHHHHHhCCCCeEEEEeCCH--HHHHHHHHhC----CCcEEEEcchhhC--CCCCCceeEEEEe
Confidence 35779999999999999999987 67999999995 6888887653 3456666666543 2334689999987
Q ss_pred CCcCCCccHHHHHHHHHHHhhcCCCeEEEEEeec
Q 026274 147 DVFYDASAFDDLFATITYLLQSSPGSVFITTYHN 180 (241)
Q Consensus 147 dvly~~~~~~~ll~~~~~lL~~~~~~~~~~~~~~ 180 (241)
.+. ..++.+.++|+ |||.+++....
T Consensus 156 ~~~-------~~l~~~~~~L~--pgG~l~~~~~~ 180 (269)
T 1p91_A 156 YAP-------CKAEELARVVK--PGGWVITATPG 180 (269)
T ss_dssp SCC-------CCHHHHHHHEE--EEEEEEEEEEC
T ss_pred CCh-------hhHHHHHHhcC--CCcEEEEEEcC
Confidence 652 24788899998 56665555443
|
| >1sqg_A SUN protein, FMU protein; rossmann-fold, mixed beta sheet, methyltransferase-fold, RNA-binding domain; 1.65A {Escherichia coli} SCOP: a.79.1.3 c.66.1.38 PDB: 1sqf_A | Back alignment and structure |
|---|
Probab=99.04 E-value=1.6e-09 Score=98.21 Aligned_cols=139 Identities=10% Similarity=0.034 Sum_probs=93.5
Q ss_pred ccHHHHHHHHHhccCCCCCCeEEEecCCCCHHHHHHHHhC--CEEEEEcCCCcHHHHHHHHHHHHHcCCceEEEEeecCC
Q 026274 53 PCSVILAEYVWQQRYRFSGANVVELGAGTSLPGLVAAKVG--SNVTLTDDSNRIEVLKNMRRVCEMNKLNCRVMGLTWGF 130 (241)
Q Consensus 53 ~~s~~L~~~l~~~~~~~~~~~VLElGcGtGl~sl~la~~g--~~V~~tD~~~~~~~l~~~~~n~~~n~~~~~~~~l~w~~ 130 (241)
.++..++..+. ..++.+|||+|||+|..+..+++.+ .+|+++|+++ .+++.+++|+..++.++.+...|..+
T Consensus 233 ~~s~~~~~~l~----~~~g~~VLDlgaG~G~~t~~la~~~~~~~v~a~D~~~--~~l~~~~~~~~~~g~~~~~~~~D~~~ 306 (429)
T 1sqg_A 233 ASAQGCMTWLA----PQNGEHILDLCAAPGGKTTHILEVAPEAQVVAVDIDE--QRLSRVYDNLKRLGMKATVKQGDGRY 306 (429)
T ss_dssp HHHHTHHHHHC----CCTTCEEEEESCTTCHHHHHHHHHCTTCEEEEEESST--TTHHHHHHHHHHTTCCCEEEECCTTC
T ss_pred HHHHHHHHHcC----CCCcCeEEEECCCchHHHHHHHHHcCCCEEEEECCCH--HHHHHHHHHHHHcCCCeEEEeCchhh
Confidence 45555555553 3467899999999999999999875 5999999997 59999999999998887777776655
Q ss_pred CCcCcCCCCCcEEEEcCC------cCCCccH----------------HHHHHHHHHHhhcCCCeEEEEEe---eccCchh
Q 026274 131 LDASIFDLNPNIILGADV------FYDASAF----------------DDLFATITYLLQSSPGSVFITTY---HNRSGHH 185 (241)
Q Consensus 131 ~~~~~~~~~fDlIl~~dv------ly~~~~~----------------~~ll~~~~~lL~~~~~~~~~~~~---~~r~~~~ 185 (241)
......+.+||+|++..+ +...++. ..+++.+.++|+ +||.++++. .......
T Consensus 307 ~~~~~~~~~fD~Vl~D~Pcsg~g~~~~~p~~~~~~~~~~~~~l~~~q~~~L~~a~~~Lk--pGG~lvystcs~~~~ene~ 384 (429)
T 1sqg_A 307 PSQWCGEQQFDRILLDAPCSATGVIRRHPDIKWLRRDRDIPELAQLQSEILDAIWPHLK--TGGTLVYATCSVLPEENSL 384 (429)
T ss_dssp THHHHTTCCEEEEEEECCCCCGGGTTTCTTHHHHCCTTHHHHHHHHHHHHHHHHGGGEE--EEEEEEEEESCCCGGGTHH
T ss_pred chhhcccCCCCEEEEeCCCCcccccCCCcchhhcCCHHHHHHHHHHHHHHHHHHHHhcC--CCCEEEEEECCCChhhHHH
Confidence 421122358999996432 2222222 477888889998 556555442 2222333
Q ss_pred HHHHHHHHc-CCEEE
Q 026274 186 LIEFLMVKW-GLKCV 199 (241)
Q Consensus 186 ~~~~~~~~~-g~~~~ 199 (241)
.+..+++++ +|...
T Consensus 385 ~v~~~l~~~~~~~~~ 399 (429)
T 1sqg_A 385 QIKAFLQRTADAELC 399 (429)
T ss_dssp HHHHHHHHCTTCEEC
T ss_pred HHHHHHHhCCCCEEe
Confidence 445455444 67654
|
| >3frh_A 16S rRNA methylase; methyltransferase domain, helical N-terminal domain, methyltransferase, plasmid, transferase; HET: SAH; 1.20A {Escherichia coli} PDB: 3fri_A* 3b89_A* | Back alignment and structure |
|---|
Probab=99.03 E-value=1.6e-09 Score=90.75 Aligned_cols=101 Identities=7% Similarity=-0.069 Sum_probs=74.4
Q ss_pred CCCCeEEEecCCCCHHHHHHHHhCCEEEEEcCCCcHHHHHHHHHHHHHcCCceEEEEeecCCCCcCcCCCCCcEEEEcCC
Q 026274 69 FSGANVVELGAGTSLPGLVAAKVGSNVTLTDDSNRIEVLKNMRRVCEMNKLNCRVMGLTWGFLDASIFDLNPNIILGADV 148 (241)
Q Consensus 69 ~~~~~VLElGcGtGl~sl~la~~g~~V~~tD~~~~~~~l~~~~~n~~~n~~~~~~~~l~w~~~~~~~~~~~fDlIl~~dv 148 (241)
....+|||||||+|.+++.+. -+..|+++|+++ .+++.++.++..++.+.++...|.-. .....+||+|++..+
T Consensus 104 ~~p~~VLDlGCG~gpLal~~~-~~~~y~a~DId~--~~i~~ar~~~~~~g~~~~~~v~D~~~---~~~~~~~DvvLllk~ 177 (253)
T 3frh_A 104 ETPRRVLDIACGLNPLALYER-GIASVWGCDIHQ--GLGDVITPFAREKDWDFTFALQDVLC---APPAEAGDLALIFKL 177 (253)
T ss_dssp CCCSEEEEETCTTTHHHHHHT-TCSEEEEEESBH--HHHHHHHHHHHHTTCEEEEEECCTTT---SCCCCBCSEEEEESC
T ss_pred CCCCeEEEecCCccHHHHHhc-cCCeEEEEeCCH--HHHHHHHHHHHhcCCCceEEEeeccc---CCCCCCcchHHHHHH
Confidence 346799999999999999988 555999999995 79999999999999888877665543 334568999999988
Q ss_pred cCCCcc--HHHHHHHHHHHhhcCCCeEEEEEee
Q 026274 149 FYDASA--FDDLFATITYLLQSSPGSVFITTYH 179 (241)
Q Consensus 149 ly~~~~--~~~ll~~~~~lL~~~~~~~~~~~~~ 179 (241)
+++.+. ...++ .+.+.|+ +++ ++++++
T Consensus 178 lh~LE~q~~~~~~-~ll~aL~--~~~-vvVsfP 206 (253)
T 3frh_A 178 LPLLEREQAGSAM-ALLQSLN--TPR-MAVSFP 206 (253)
T ss_dssp HHHHHHHSTTHHH-HHHHHCB--CSE-EEEEEE
T ss_pred HHHhhhhchhhHH-HHHHHhc--CCC-EEEEcC
Confidence 887532 22344 4444555 444 444444
|
| >3lcv_B Sisomicin-gentamicin resistance methylase SGM; antibiotic resistance, methyltransferase, transferase; HET: SAM; 2.00A {Micromonospora zionensis} PDB: 3lcu_A* | Back alignment and structure |
|---|
Probab=99.02 E-value=1.6e-09 Score=91.69 Aligned_cols=122 Identities=9% Similarity=0.026 Sum_probs=85.9
Q ss_pred CCeEEEecCCCCHHHHHHHHh--CCEEEEEcCCCcHHHHHHHHHHHHHcCCceEEEEeecCCCCcCcCCCCCcEEEEcCC
Q 026274 71 GANVVELGAGTSLPGLVAAKV--GSNVTLTDDSNRIEVLKNMRRVCEMNKLNCRVMGLTWGFLDASIFDLNPNIILGADV 148 (241)
Q Consensus 71 ~~~VLElGcGtGl~sl~la~~--g~~V~~tD~~~~~~~l~~~~~n~~~n~~~~~~~~l~w~~~~~~~~~~~fDlIl~~dv 148 (241)
..+|||||||+|.+++.++.. .++|+++|+++ .|++.++.|+..+++..++...|. .......+||+++++.+
T Consensus 133 p~~VLDLGCG~GpLAl~~~~~~p~a~y~a~DId~--~~le~a~~~l~~~g~~~~~~v~D~---~~~~p~~~~DvaL~lkt 207 (281)
T 3lcv_B 133 PNTLRDLACGLNPLAAPWMGLPAETVYIASDIDA--RLVGFVDEALTRLNVPHRTNVADL---LEDRLDEPADVTLLLKT 207 (281)
T ss_dssp CSEEEETTCTTGGGCCTTTTCCTTCEEEEEESBH--HHHHHHHHHHHHTTCCEEEEECCT---TTSCCCSCCSEEEETTC
T ss_pred CceeeeeccCccHHHHHHHhhCCCCEEEEEeCCH--HHHHHHHHHHHhcCCCceEEEeee---cccCCCCCcchHHHHHH
Confidence 568999999999999999887 34999999995 699999999999999877765544 34445678999999999
Q ss_pred cCCCccH--HHHHHHHHHHhhcCCCeEEEEEeec-----cCc------hhHHHHHHHHcCCEEEEE
Q 026274 149 FYDASAF--DDLFATITYLLQSSPGSVFITTYHN-----RSG------HHLIEFLMVKWGLKCVKL 201 (241)
Q Consensus 149 ly~~~~~--~~ll~~~~~lL~~~~~~~~~~~~~~-----r~~------~~~~~~~~~~~g~~~~~i 201 (241)
+.+.+.. ..++ .+.+.|+ ++++| ++++. |.. ...++..+...|+.+..+
T Consensus 208 i~~Le~q~kg~g~-~ll~aL~--~~~vv-VSfp~ksl~Grs~gm~~~Y~~~~e~~~~~~g~~~~~~ 269 (281)
T 3lcv_B 208 LPCLETQQRGSGW-EVIDIVN--SPNIV-VTFPTKSLGQRSKGMFQNYSQSFESQARERSCRIQRL 269 (281)
T ss_dssp HHHHHHHSTTHHH-HHHHHSS--CSEEE-EEEECC-------CHHHHHHHHHHHHHHHHTCCEEEE
T ss_pred HHHhhhhhhHHHH-HHHHHhC--CCCEE-EeccchhhcCCCcchhhHHHHHHHHHHHhcCCceeee
Confidence 9886443 2445 5555555 44544 34444 221 112233456678866665
|
| >3gjy_A Spermidine synthase; APC62791, structural genomics, PSI-2, protein structure initiative; HET: MSE; 1.47A {Corynebacterium glutamicum atcc 13032} | Back alignment and structure |
|---|
Probab=99.02 E-value=1.3e-09 Score=94.94 Aligned_cols=104 Identities=16% Similarity=0.213 Sum_probs=75.7
Q ss_pred CCeEEEecCCCCHHHHHHHHh--CCEEEEEcCCCcHHHHHHHHHHHHHc-CCceEEEEeecCCCCcCcCCCCCcEEEEcC
Q 026274 71 GANVVELGAGTSLPGLVAAKV--GSNVTLTDDSNRIEVLKNMRRVCEMN-KLNCRVMGLTWGFLDASIFDLNPNIILGAD 147 (241)
Q Consensus 71 ~~~VLElGcGtGl~sl~la~~--g~~V~~tD~~~~~~~l~~~~~n~~~n-~~~~~~~~l~w~~~~~~~~~~~fDlIl~~d 147 (241)
..+|||||||+|.++..+++. +.+|+++|+++ ++++.++++...+ ..++++...|..+......+.+||+|++.
T Consensus 90 ~~rVLdIG~G~G~la~~la~~~p~~~v~~VEidp--~vi~~Ar~~~~~~~~~rv~v~~~Da~~~l~~~~~~~fDvIi~D- 166 (317)
T 3gjy_A 90 KLRITHLGGGACTMARYFADVYPQSRNTVVELDA--ELARLSREWFDIPRAPRVKIRVDDARMVAESFTPASRDVIIRD- 166 (317)
T ss_dssp GCEEEEESCGGGHHHHHHHHHSTTCEEEEEESCH--HHHHHHHHHSCCCCTTTEEEEESCHHHHHHTCCTTCEEEEEEC-
T ss_pred CCEEEEEECCcCHHHHHHHHHCCCcEEEEEECCH--HHHHHHHHhccccCCCceEEEECcHHHHHhhccCCCCCEEEEC-
Confidence 349999999999999999984 56999999995 7999999988654 34577776665443222234689999973
Q ss_pred CcC---CCcc--HHHHHHHHHHHhhcCCCeEEEEEee
Q 026274 148 VFY---DASA--FDDLFATITYLLQSSPGSVFITTYH 179 (241)
Q Consensus 148 vly---~~~~--~~~ll~~~~~lL~~~~~~~~~~~~~ 179 (241)
+.. .+.. ...+++.++++|+ ++|++++...
T Consensus 167 ~~~~~~~~~~L~t~efl~~~~r~Lk--pgGvlv~~~~ 201 (317)
T 3gjy_A 167 VFAGAITPQNFTTVEFFEHCHRGLA--PGGLYVANCG 201 (317)
T ss_dssp CSTTSCCCGGGSBHHHHHHHHHHEE--EEEEEEEEEE
T ss_pred CCCccccchhhhHHHHHHHHHHhcC--CCcEEEEEec
Confidence 322 1222 2789999999998 6677666554
|
| >2oxt_A Nucleoside-2'-O-methyltransferase; flavivirus, viral enzyme, RNA capping, S-adenosyl-L-methionine, viral protein; HET: SAM; 2.90A {Meaban virus} | Back alignment and structure |
|---|
Probab=99.02 E-value=2.9e-10 Score=96.90 Aligned_cols=119 Identities=15% Similarity=0.015 Sum_probs=75.6
Q ss_pred EEeccHHHHHHHHHhccCCCCCCeEEEecCCCCHHHHHHHHhCCEEEEEcCCCcHHHHHHHHHHH---HHcCCceEEE--
Q 026274 50 FVWPCSVILAEYVWQQRYRFSGANVVELGAGTSLPGLVAAKVGSNVTLTDDSNRIEVLKNMRRVC---EMNKLNCRVM-- 124 (241)
Q Consensus 50 ~~W~~s~~L~~~l~~~~~~~~~~~VLElGcGtGl~sl~la~~g~~V~~tD~~~~~~~l~~~~~n~---~~n~~~~~~~-- 124 (241)
.+=.++..|...+.. ....++.+|||||||+|.++..+++. .+|+++|+++ |+..++++. ...+.++.+.
T Consensus 55 ~~sR~a~KL~~i~~~-~~~~~g~~VLDlGcGtG~~s~~la~~-~~V~gvD~s~---m~~~a~~~~~~~~~~~~~v~~~~~ 129 (265)
T 2oxt_A 55 SVSRGTAKLAWMEER-GYVELTGRVVDLGCGRGGWSYYAASR-PHVMDVRAYT---LGVGGHEVPRITESYGWNIVKFKS 129 (265)
T ss_dssp CSSTHHHHHHHHHHH-TSCCCCEEEEEESCTTSHHHHHHHTS-TTEEEEEEEC---CCCSSCCCCCCCCBTTGGGEEEEC
T ss_pred ccchHHHHHHHHHHc-CCCCCCCEEEEeCcCCCHHHHHHHHc-CcEEEEECch---hhhhhhhhhhhhhccCCCeEEEec
Confidence 344567777766665 34446789999999999999999998 7899999996 432221110 0011145555
Q ss_pred EeecCCCCcCcCCCCCcEEEEcCCcCCCccH----H---HHHHHHHHHhhcCCCe--EEEEEeec
Q 026274 125 GLTWGFLDASIFDLNPNIILGADVFYDASAF----D---DLFATITYLLQSSPGS--VFITTYHN 180 (241)
Q Consensus 125 ~l~w~~~~~~~~~~~fDlIl~~dvly~~~~~----~---~ll~~~~~lL~~~~~~--~~~~~~~~ 180 (241)
..|..+. .+.+||+|++.-. +...+. . .+++.+.++|++ || .|++....
T Consensus 130 ~~D~~~l----~~~~fD~V~sd~~-~~~~~~~~d~~~~l~~L~~~~r~Lkp--GG~~~fv~kv~~ 187 (265)
T 2oxt_A 130 RVDIHTL----PVERTDVIMCDVG-ESSPKWSVESERTIKILELLEKWKVK--NPSADFVVKVLC 187 (265)
T ss_dssp SCCTTTS----CCCCCSEEEECCC-CCCSCHHHHHHHHHHHHHHHHHHHHH--CTTCEEEEEESC
T ss_pred ccCHhHC----CCCCCcEEEEeCc-ccCCccchhHHHHHHHHHHHHHHhcc--CCCeEEEEEeCC
Confidence 4444432 2468999998655 433221 1 277889999994 45 66665433
|
| >2h1r_A Dimethyladenosine transferase, putative; SGC toronto dimethyladenosine transferase, structural genomics, structural genomics consortium; 1.89A {Plasmodium falciparum} | Back alignment and structure |
|---|
Probab=99.02 E-value=1.3e-09 Score=94.23 Aligned_cols=86 Identities=13% Similarity=0.042 Sum_probs=63.0
Q ss_pred HHHHHhccCCCCCCeEEEecCCCCHHHHHHHHhCCEEEEEcCCCcHHHHHHHHHHHHHcCC-ceEEEEeecCCCCcCcCC
Q 026274 59 AEYVWQQRYRFSGANVVELGAGTSLPGLVAAKVGSNVTLTDDSNRIEVLKNMRRVCEMNKL-NCRVMGLTWGFLDASIFD 137 (241)
Q Consensus 59 ~~~l~~~~~~~~~~~VLElGcGtGl~sl~la~~g~~V~~tD~~~~~~~l~~~~~n~~~n~~-~~~~~~l~w~~~~~~~~~ 137 (241)
.+.+.......++.+|||+|||+|.++..+++.+.+|+++|+++ .+++.+++|+..++. ++++...|+.+.. .
T Consensus 31 ~~~i~~~~~~~~~~~VLDiG~G~G~lt~~La~~~~~v~~vDi~~--~~~~~a~~~~~~~~~~~v~~~~~D~~~~~----~ 104 (299)
T 2h1r_A 31 LDKIIYAAKIKSSDIVLEIGCGTGNLTVKLLPLAKKVITIDIDS--RMISEVKKRCLYEGYNNLEVYEGDAIKTV----F 104 (299)
T ss_dssp HHHHHHHHCCCTTCEEEEECCTTSTTHHHHTTTSSEEEEECSCH--HHHHHHHHHHHHTTCCCEEC----CCSSC----C
T ss_pred HHHHHHhcCCCCcCEEEEEcCcCcHHHHHHHhcCCEEEEEECCH--HHHHHHHHHHHHcCCCceEEEECchhhCC----c
Confidence 34444434445778999999999999999999988999999995 699999999887664 5666666665432 2
Q ss_pred CCCcEEEEcCCcC
Q 026274 138 LNPNIILGADVFY 150 (241)
Q Consensus 138 ~~fDlIl~~dvly 150 (241)
.+||+|+++-+.+
T Consensus 105 ~~~D~Vv~n~py~ 117 (299)
T 2h1r_A 105 PKFDVCTANIPYK 117 (299)
T ss_dssp CCCSEEEEECCGG
T ss_pred ccCCEEEEcCCcc
Confidence 3799999865444
|
| >3axs_A Probable N(2),N(2)-dimethylguanosine tRNA methylt TRM1; structural genomics, riken structural genomics/proteomics in RSGI; HET: SFG; 2.16A {Aquifex aeolicus} PDB: 3axt_A* | Back alignment and structure |
|---|
Probab=99.01 E-value=5.8e-10 Score=100.01 Aligned_cols=100 Identities=9% Similarity=0.142 Sum_probs=76.6
Q ss_pred CCCeEEEecCCCCHHHHHHHHh--CC-EEEEEcCCCcHHHHHHHHHHHHHcCCc---eEEEEeecCCCCc-CcCCCCCcE
Q 026274 70 SGANVVELGAGTSLPGLVAAKV--GS-NVTLTDDSNRIEVLKNMRRVCEMNKLN---CRVMGLTWGFLDA-SIFDLNPNI 142 (241)
Q Consensus 70 ~~~~VLElGcGtGl~sl~la~~--g~-~V~~tD~~~~~~~l~~~~~n~~~n~~~---~~~~~l~w~~~~~-~~~~~~fDl 142 (241)
.|.+|||++||+|..|+.+|+. |+ +|+++|+++ ++++.+++|++.|++. +++...|..+... . ...+||+
T Consensus 52 ~g~~VLDlfaGtG~~sl~aa~~~~ga~~V~avDi~~--~av~~~~~N~~~Ngl~~~~v~v~~~Da~~~l~~~-~~~~fD~ 128 (392)
T 3axs_A 52 RPVKVADPLSASGIRAIRFLLETSCVEKAYANDISS--KAIEIMKENFKLNNIPEDRYEIHGMEANFFLRKE-WGFGFDY 128 (392)
T ss_dssp SCEEEEESSCTTSHHHHHHHHHCSCEEEEEEECSCH--HHHHHHHHHHHHTTCCGGGEEEECSCHHHHHHSC-CSSCEEE
T ss_pred CCCEEEECCCcccHHHHHHHHhCCCCCEEEEEECCH--HHHHHHHHHHHHhCCCCceEEEEeCCHHHHHHHh-hCCCCcE
Confidence 4679999999999999999985 54 899999995 7999999999999984 6666555433221 1 2357999
Q ss_pred EEEcCCcCCCccHHHHHHHHHHHhhcCCCeEEEEEe
Q 026274 143 ILGADVFYDASAFDDLFATITYLLQSSPGSVFITTY 178 (241)
Q Consensus 143 Il~~dvly~~~~~~~ll~~~~~lL~~~~~~~~~~~~ 178 (241)
|+... | .....+++.+.++|+ ++|++++.+
T Consensus 129 V~lDP--~--g~~~~~l~~a~~~Lk--~gGll~~t~ 158 (392)
T 3axs_A 129 VDLDP--F--GTPVPFIESVALSMK--RGGILSLTA 158 (392)
T ss_dssp EEECC--S--SCCHHHHHHHHHHEE--EEEEEEEEE
T ss_pred EEECC--C--cCHHHHHHHHHHHhC--CCCEEEEEe
Confidence 99654 3 234678888888888 567777765
|
| >2wa2_A Non-structural protein 5; transferase, S-adenosyl-L- methionine, virion, membrane, flavivirus, N7-methyltransferase, 2'-O-methyltransferase; HET: SAM; 1.80A {Modoc virus} PDB: 2wa1_A* | Back alignment and structure |
|---|
Probab=99.01 E-value=3.3e-10 Score=97.12 Aligned_cols=118 Identities=14% Similarity=-0.019 Sum_probs=73.6
Q ss_pred eEEeccHHHHHHHHHhccCCCCCCeEEEecCCCCHHHHHHHHhCCEEEEEcCCCcHHHHHHHHHHHH---HcCCceEEE-
Q 026274 49 LFVWPCSVILAEYVWQQRYRFSGANVVELGAGTSLPGLVAAKVGSNVTLTDDSNRIEVLKNMRRVCE---MNKLNCRVM- 124 (241)
Q Consensus 49 ~~~W~~s~~L~~~l~~~~~~~~~~~VLElGcGtGl~sl~la~~g~~V~~tD~~~~~~~l~~~~~n~~---~n~~~~~~~- 124 (241)
..+=.++..|...+.. ....++.+|||||||+|.++..+++. .+|+++|+++ |+..++++.. ..+.++.+.
T Consensus 62 ~~~sR~a~KL~~i~~~-~~~~~g~~VLDlGcGtG~~s~~la~~-~~V~gVD~s~---m~~~a~~~~~~~~~~~~~v~~~~ 136 (276)
T 2wa2_A 62 HAVSRGTAKLAWIDER-GGVELKGTVVDLGCGRGSWSYYAASQ-PNVREVKAYT---LGTSGHEKPRLVETFGWNLITFK 136 (276)
T ss_dssp ---CHHHHHHHHHHHT-TSCCCCEEEEEESCTTCHHHHHHHTS-TTEEEEEEEC---CCCTTSCCCCCCCCTTGGGEEEE
T ss_pred CcCchHHHHHHHHHHc-CCCCCCCEEEEeccCCCHHHHHHHHc-CCEEEEECch---hhhhhhhchhhhhhcCCCeEEEe
Confidence 3445667777666654 33446889999999999999999998 7899999996 4322221100 011145555
Q ss_pred -EeecCCCCcCcCCCCCcEEEEcCCcCCCccH----H---HHHHHHHHHhhcCCCe--EEEEEe
Q 026274 125 -GLTWGFLDASIFDLNPNIILGADVFYDASAF----D---DLFATITYLLQSSPGS--VFITTY 178 (241)
Q Consensus 125 -~l~w~~~~~~~~~~~fDlIl~~dvly~~~~~----~---~ll~~~~~lL~~~~~~--~~~~~~ 178 (241)
+.|..+. .+.+||+|++.-. +..... . .+++.+.++|+| || .|++..
T Consensus 137 ~~~D~~~l----~~~~fD~Vvsd~~-~~~~~~~~d~~~~l~~L~~~~r~Lkp--GG~~~~v~~~ 193 (276)
T 2wa2_A 137 SKVDVTKM----EPFQADTVLCDIG-ESNPTAAVEASRTLTVLNVISRWLEY--NQGCGFCVKV 193 (276)
T ss_dssp CSCCGGGC----CCCCCSEEEECCC-CCCSCHHHHHHHHHHHHHHHHHHHHH--STTCEEEEEE
T ss_pred ccCcHhhC----CCCCcCEEEECCC-cCCCchhhhHHHHHHHHHHHHHHhcc--CCCcEEEEEe
Confidence 4444432 2468999998655 433221 1 367889999994 44 555543
|
| >1iy9_A Spermidine synthase; rossmann fold, structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.30A {Bacillus subtilis} SCOP: c.66.1.17 | Back alignment and structure |
|---|
Probab=99.00 E-value=6.7e-10 Score=94.98 Aligned_cols=104 Identities=15% Similarity=0.104 Sum_probs=75.5
Q ss_pred CCCeEEEecCCCCHHHHHHHHh-C-CEEEEEcCCCcHHHHHHHHHHHHH-----cCCceEEEEeecCCCCcCcCCCCCcE
Q 026274 70 SGANVVELGAGTSLPGLVAAKV-G-SNVTLTDDSNRIEVLKNMRRVCEM-----NKLNCRVMGLTWGFLDASIFDLNPNI 142 (241)
Q Consensus 70 ~~~~VLElGcGtGl~sl~la~~-g-~~V~~tD~~~~~~~l~~~~~n~~~-----n~~~~~~~~l~w~~~~~~~~~~~fDl 142 (241)
++++|||||||+|.++..+++. + .+|+++|+++ ++++.+++|+.. +..++++...|..+.... .+.+||+
T Consensus 75 ~~~~VLdiG~G~G~~~~~l~~~~~~~~v~~vEid~--~~v~~ar~~~~~~~~~~~~~rv~v~~~D~~~~l~~-~~~~fD~ 151 (275)
T 1iy9_A 75 NPEHVLVVGGGDGGVIREILKHPSVKKATLVDIDG--KVIEYSKKFLPSIAGKLDDPRVDVQVDDGFMHIAK-SENQYDV 151 (275)
T ss_dssp SCCEEEEESCTTCHHHHHHTTCTTCSEEEEEESCH--HHHHHHHHHCHHHHTTTTSTTEEEEESCSHHHHHT-CCSCEEE
T ss_pred CCCEEEEECCchHHHHHHHHhCCCCceEEEEECCH--HHHHHHHHHhHhhccccCCCceEEEECcHHHHHhh-CCCCeeE
Confidence 5689999999999999999987 4 4999999995 799999998743 233566666554332111 2458999
Q ss_pred EEEcCCcCCCc-----cHHHHHHHHHHHhhcCCCeEEEEEee
Q 026274 143 ILGADVFYDAS-----AFDDLFATITYLLQSSPGSVFITTYH 179 (241)
Q Consensus 143 Il~~dvly~~~-----~~~~ll~~~~~lL~~~~~~~~~~~~~ 179 (241)
|++ |..+... ....+++.+.++|+ +||++++...
T Consensus 152 Ii~-d~~~~~~~~~~l~~~~~~~~~~~~L~--pgG~lv~~~~ 190 (275)
T 1iy9_A 152 IMV-DSTEPVGPAVNLFTKGFYAGIAKALK--EDGIFVAQTD 190 (275)
T ss_dssp EEE-SCSSCCSCCCCCSTTHHHHHHHHHEE--EEEEEEEECC
T ss_pred EEE-CCCCCCCcchhhhHHHHHHHHHHhcC--CCcEEEEEcC
Confidence 998 4444211 13688999999998 6787777643
|
| >3ldu_A Putative methylase; structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; HET: MSE GTP; 1.70A {Clostridium difficile} | Back alignment and structure |
|---|
Probab=99.00 E-value=5.6e-09 Score=93.48 Aligned_cols=117 Identities=15% Similarity=0.109 Sum_probs=87.7
Q ss_pred HHHHHHHHhccCCCCCCeEEEecCCCCHHHHHHHHhC----------------------------------------CEE
Q 026274 56 VILAEYVWQQRYRFSGANVVELGAGTSLPGLVAAKVG----------------------------------------SNV 95 (241)
Q Consensus 56 ~~L~~~l~~~~~~~~~~~VLElGcGtGl~sl~la~~g----------------------------------------~~V 95 (241)
..|+..|........+.+|||.|||+|.+.+.+|..+ .+|
T Consensus 181 e~lAa~ll~~~~~~~~~~vlDp~CGSGt~lieaa~~~~~~apg~~R~f~f~~w~~~~~~~w~~~~~~a~~~~~~~~~~~V 260 (385)
T 3ldu_A 181 ETLAAGLIYLTPWKAGRVLVDPMCGSGTILIEAAMIGINMAPGLNREFISEKWRTLDKKIWWDVRKDAFNKIDNESKFKI 260 (385)
T ss_dssp HHHHHHHHHTSCCCTTSCEEETTCTTCHHHHHHHHHHTTCCTTTTSCCGGGGCTTSCHHHHHHHHHHHHHHSCCSCCCCE
T ss_pred HHHHHHHHHhhCCCCCCeEEEcCCCCCHHHHHHHHHHhhhCCCcccccchhhcccCCHHHHHHHHHHHHHHhhccCCceE
Confidence 4566666665555577899999999999999998874 369
Q ss_pred EEEcCCCcHHHHHHHHHHHHHcCC--ceEEEEeecCCCCcCcCCCCCcEEEEcCCcCCC----ccHHHHHHHHHHHhhcC
Q 026274 96 TLTDDSNRIEVLKNMRRVCEMNKL--NCRVMGLTWGFLDASIFDLNPNIILGADVFYDA----SAFDDLFATITYLLQSS 169 (241)
Q Consensus 96 ~~tD~~~~~~~l~~~~~n~~~n~~--~~~~~~l~w~~~~~~~~~~~fDlIl~~dvly~~----~~~~~ll~~~~~lL~~~ 169 (241)
+++|+++ .|++.+++|+..+++ .+++...|+.+... +.+||+|+++.++... .....+.+.+.+.|++-
T Consensus 261 ~GvDid~--~ai~~Ar~Na~~~gl~~~i~~~~~D~~~l~~---~~~~D~Iv~NPPyg~rl~~~~~l~~ly~~lg~~lk~~ 335 (385)
T 3ldu_A 261 YGYDIDE--ESIDIARENAEIAGVDEYIEFNVGDATQFKS---EDEFGFIITNPPYGERLEDKDSVKQLYKELGYAFRKL 335 (385)
T ss_dssp EEEESCH--HHHHHHHHHHHHHTCGGGEEEEECCGGGCCC---SCBSCEEEECCCCCCSHHHHHHHHHHHHHHHHHHHTS
T ss_pred EEEECCH--HHHHHHHHHHHHcCCCCceEEEECChhhcCc---CCCCcEEEECCCCcCccCCHHHHHHHHHHHHHHHhhC
Confidence 9999995 799999999999998 47888877765432 3479999998885432 35667777787888753
Q ss_pred CC-eEEEEE
Q 026274 170 PG-SVFITT 177 (241)
Q Consensus 170 ~~-~~~~~~ 177 (241)
++ .+++++
T Consensus 336 ~g~~~~iit 344 (385)
T 3ldu_A 336 KNWSYYLIT 344 (385)
T ss_dssp BSCEEEEEE
T ss_pred CCCEEEEEE
Confidence 33 344444
|
| >3ll7_A Putative methyltransferase; methytransferase, structural genomics, MCSG, PSI-2, protein initiative; HET: MSE; 1.80A {Porphyromonas gingivalis} | Back alignment and structure |
|---|
Probab=98.99 E-value=5.7e-10 Score=100.44 Aligned_cols=110 Identities=12% Similarity=0.102 Sum_probs=77.5
Q ss_pred eccHHHHHHHHHhccCCCC-CCeEEEecCCCCHHHHHHHHhCCEEEEEcCCCcHHHHHHHHHHHHHc--CC-ceEEEEee
Q 026274 52 WPCSVILAEYVWQQRYRFS-GANVVELGAGTSLPGLVAAKVGSNVTLTDDSNRIEVLKNMRRVCEMN--KL-NCRVMGLT 127 (241)
Q Consensus 52 W~~s~~L~~~l~~~~~~~~-~~~VLElGcGtGl~sl~la~~g~~V~~tD~~~~~~~l~~~~~n~~~n--~~-~~~~~~l~ 127 (241)
|.++...+.|... .++ |.+|||+|||+|..++.+|+.+++|+++|+++ .+++.+++|++.+ ++ ++++...|
T Consensus 77 Qat~e~vA~~~a~---~l~~g~~VLDLgcG~G~~al~LA~~g~~V~~VD~s~--~~l~~Ar~N~~~~~~gl~~i~~i~~D 151 (410)
T 3ll7_A 77 QSSGAVTSSYKSR---FIREGTKVVDLTGGLGIDFIALMSKASQGIYIERND--ETAVAARHNIPLLLNEGKDVNILTGD 151 (410)
T ss_dssp HSCCHHHHHHGGG---GSCTTCEEEESSCSSSHHHHHHHTTCSEEEEEESCH--HHHHHHHHHHHHHSCTTCEEEEEESC
T ss_pred hcCHHHHHHHHHH---hcCCCCEEEEeCCCchHHHHHHHhcCCEEEEEECCH--HHHHHHHHhHHHhccCCCcEEEEECc
Confidence 3445566666432 233 88999999999999999999999999999995 7999999999988 76 67777777
Q ss_pred cCCCCcCcCCCCCcEEEEcCCcC--------CCccHHHHHHHHHHHh
Q 026274 128 WGFLDASIFDLNPNIILGADVFY--------DASAFDDLFATITYLL 166 (241)
Q Consensus 128 w~~~~~~~~~~~fDlIl~~dvly--------~~~~~~~ll~~~~~lL 166 (241)
..+......+.+||+|++..... ..++..+-+..+...|
T Consensus 152 a~~~L~~~~~~~fDvV~lDPPrr~~~~grv~~led~~P~l~~~~~~l 198 (410)
T 3ll7_A 152 FKEYLPLIKTFHPDYIYVDPARRSGADKRVYAIADCEPDLIPLATEL 198 (410)
T ss_dssp GGGSHHHHHHHCCSEEEECCEEC-----CCCCGGGEESCHHHHHHHH
T ss_pred HHHhhhhccCCCceEEEECCCCcCCCCceEEehhhcCCCHHHHHHHH
Confidence 66532211124799999765443 3333444455555533
|
| >1fp1_D Isoliquiritigenin 2'-O-methyltransferase; protein-substrate, protein-product complex; HET: SAH HCC; 1.82A {Medicago sativa} SCOP: a.4.5.29 c.66.1.12 PDB: 1fpq_A* | Back alignment and structure |
|---|
Probab=98.98 E-value=2.1e-09 Score=95.46 Aligned_cols=94 Identities=14% Similarity=0.070 Sum_probs=71.8
Q ss_pred CCCCeEEEecCCCCHHHHHHHHhCC--EEEEEcCCCcHHHHHHHHHHHHHcCCceEEEEeecCCCCcCcCCCCCcEEEEc
Q 026274 69 FSGANVVELGAGTSLPGLVAAKVGS--NVTLTDDSNRIEVLKNMRRVCEMNKLNCRVMGLTWGFLDASIFDLNPNIILGA 146 (241)
Q Consensus 69 ~~~~~VLElGcGtGl~sl~la~~g~--~V~~tD~~~~~~~l~~~~~n~~~n~~~~~~~~l~w~~~~~~~~~~~fDlIl~~ 146 (241)
.++.+|||+|||+|..+..+++.+. +++++|+ + .+++.+++. .++++...|..+ +. + .||+|+++
T Consensus 208 ~~~~~vLDvG~G~G~~~~~l~~~~~~~~~~~~D~-~--~~~~~a~~~-----~~v~~~~~d~~~---~~-~-~~D~v~~~ 274 (372)
T 1fp1_D 208 EGISTLVDVGGGSGRNLELIISKYPLIKGINFDL-P--QVIENAPPL-----SGIEHVGGDMFA---SV-P-QGDAMILK 274 (372)
T ss_dssp TTCSEEEEETCTTSHHHHHHHHHCTTCEEEEEEC-H--HHHTTCCCC-----TTEEEEECCTTT---CC-C-CEEEEEEE
T ss_pred CCCCEEEEeCCCCcHHHHHHHHHCCCCeEEEeCh-H--HHHHhhhhc-----CCCEEEeCCccc---CC-C-CCCEEEEe
Confidence 3567999999999999999998753 7888899 4 577765541 246777766654 22 2 29999999
Q ss_pred CCcCCCccHH--HHHHHHHHHhhcCCCeEEEEE
Q 026274 147 DVFYDASAFD--DLFATITYLLQSSPGSVFITT 177 (241)
Q Consensus 147 dvly~~~~~~--~ll~~~~~lL~~~~~~~~~~~ 177 (241)
.++++.++.. .+++.+.++|+ |||.+++.
T Consensus 275 ~~lh~~~d~~~~~~l~~~~~~L~--pgG~l~i~ 305 (372)
T 1fp1_D 275 AVCHNWSDEKCIEFLSNCHKALS--PNGKVIIV 305 (372)
T ss_dssp SSGGGSCHHHHHHHHHHHHHHEE--EEEEEEEE
T ss_pred cccccCCHHHHHHHHHHHHHhcC--CCCEEEEE
Confidence 9999887777 99999999998 55655543
|
| >2i7c_A Spermidine synthase; transferase, structural genomics consor; HET: AAT 1PG; 1.71A {Plasmodium falciparum} PDB: 2hte_A* 3b7p_A* 3rie_A* 2pwp_A* | Back alignment and structure |
|---|
Probab=98.98 E-value=6.9e-10 Score=95.25 Aligned_cols=105 Identities=13% Similarity=0.116 Sum_probs=76.2
Q ss_pred CCCeEEEecCCCCHHHHHHHHhC--CEEEEEcCCCcHHHHHHHHHHHHHc-----CCceEEEEeecCCCCcCcCCCCCcE
Q 026274 70 SGANVVELGAGTSLPGLVAAKVG--SNVTLTDDSNRIEVLKNMRRVCEMN-----KLNCRVMGLTWGFLDASIFDLNPNI 142 (241)
Q Consensus 70 ~~~~VLElGcGtGl~sl~la~~g--~~V~~tD~~~~~~~l~~~~~n~~~n-----~~~~~~~~l~w~~~~~~~~~~~fDl 142 (241)
++++|||||||+|..+..+++.. .+|+++|+++ ++++.+++++... ..++++...|..+.... .+++||+
T Consensus 78 ~~~~VLdiG~G~G~~~~~l~~~~~~~~v~~vDid~--~~i~~a~~~~~~~~~~~~~~~v~~~~~D~~~~l~~-~~~~fD~ 154 (283)
T 2i7c_A 78 EPKNVLVVGGGDGGIIRELCKYKSVENIDICEIDE--TVIEVSKIYFKNISCGYEDKRVNVFIEDASKFLEN-VTNTYDV 154 (283)
T ss_dssp SCCEEEEEECTTSHHHHHHTTCTTCCEEEEEESCH--HHHHHHHHHCTTTSGGGGSTTEEEEESCHHHHHHH-CCSCEEE
T ss_pred CCCeEEEEeCCcCHHHHHHHHcCCCCEEEEEECCH--HHHHHHHHHhHHhccccCCCcEEEEECChHHHHHh-CCCCceE
Confidence 56899999999999999999873 5999999995 7999999987643 34567766665432211 2468999
Q ss_pred EEEc--CCcCCCccH--HHHHHHHHHHhhcCCCeEEEEEee
Q 026274 143 ILGA--DVFYDASAF--DDLFATITYLLQSSPGSVFITTYH 179 (241)
Q Consensus 143 Il~~--dvly~~~~~--~~ll~~~~~lL~~~~~~~~~~~~~ 179 (241)
|++. +.......+ ..+++.+.++|+ +||++++...
T Consensus 155 Ii~d~~~~~~~~~~l~~~~~l~~~~~~L~--pgG~lv~~~~ 193 (283)
T 2i7c_A 155 IIVDSSDPIGPAETLFNQNFYEKIYNALK--PNGYCVAQCE 193 (283)
T ss_dssp EEEECCCTTTGGGGGSSHHHHHHHHHHEE--EEEEEEEECC
T ss_pred EEEcCCCCCCcchhhhHHHHHHHHHHhcC--CCcEEEEECC
Confidence 9983 222112222 789999999998 6777776643
|
| >1fp2_A Isoflavone O-methyltransferase; protein-product complex; HET: SAH HMO; 1.40A {Medicago sativa} SCOP: a.4.5.29 c.66.1.12 PDB: 1fpx_A* 2qyo_A* | Back alignment and structure |
|---|
Probab=98.98 E-value=2.3e-09 Score=94.44 Aligned_cols=94 Identities=15% Similarity=0.161 Sum_probs=71.2
Q ss_pred CCCeEEEecCCCCHHHHHHHHh--CCEEEEEcCCCcHHHHHHHHHHHHHcCCceEEEEeecCCCCcCcCCCCCcEEEEcC
Q 026274 70 SGANVVELGAGTSLPGLVAAKV--GSNVTLTDDSNRIEVLKNMRRVCEMNKLNCRVMGLTWGFLDASIFDLNPNIILGAD 147 (241)
Q Consensus 70 ~~~~VLElGcGtGl~sl~la~~--g~~V~~tD~~~~~~~l~~~~~n~~~n~~~~~~~~l~w~~~~~~~~~~~fDlIl~~d 147 (241)
.+.+|||+|||+|..+..+++. +.+++++|+ + .+++.+++. .++++...|..+ +. + .||+|+++.
T Consensus 188 ~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~--~~~~~a~~~-----~~v~~~~~d~~~---~~-p-~~D~v~~~~ 254 (352)
T 1fp2_A 188 GLESIVDVGGGTGTTAKIICETFPKLKCIVFDR-P--QVVENLSGS-----NNLTYVGGDMFT---SI-P-NADAVLLKY 254 (352)
T ss_dssp TCSEEEEETCTTSHHHHHHHHHCTTCEEEEEEC-H--HHHTTCCCB-----TTEEEEECCTTT---CC-C-CCSEEEEES
T ss_pred cCceEEEeCCCccHHHHHHHHHCCCCeEEEeeC-H--HHHhhcccC-----CCcEEEeccccC---CC-C-CccEEEeeh
Confidence 4579999999999999999987 458999999 5 588766541 236777766643 22 2 399999999
Q ss_pred CcCCCccHH--HHHHHHHHHhhcC-CCeEEEE
Q 026274 148 VFYDASAFD--DLFATITYLLQSS-PGSVFIT 176 (241)
Q Consensus 148 vly~~~~~~--~ll~~~~~lL~~~-~~~~~~~ 176 (241)
++++.++.. .+++.+.++|+++ +||.+++
T Consensus 255 ~lh~~~d~~~~~~l~~~~~~L~p~~~gG~l~i 286 (352)
T 1fp2_A 255 ILHNWTDKDCLRILKKCKEAVTNDGKRGKVTI 286 (352)
T ss_dssp CGGGSCHHHHHHHHHHHHHHHSGGGCCCEEEE
T ss_pred hhccCCHHHHHHHHHHHHHhCCCCCCCcEEEE
Confidence 999887777 9999999999841 0454443
|
| >1mjf_A Spermidine synthase; spermidine synthetase, structural genomics, PSI, protein structure initiative; 1.80A {Pyrococcus furiosus} SCOP: c.66.1.17 PDB: 2e5w_A* 2zsu_A* | Back alignment and structure |
|---|
Probab=98.97 E-value=1.1e-09 Score=93.96 Aligned_cols=102 Identities=8% Similarity=0.084 Sum_probs=73.0
Q ss_pred CCCeEEEecCCCCHHHHHHHHhCC-EEEEEcCCCcHHHHHHHHHHHHH-----------cCCceEEEEeecCCCCcCcCC
Q 026274 70 SGANVVELGAGTSLPGLVAAKVGS-NVTLTDDSNRIEVLKNMRRVCEM-----------NKLNCRVMGLTWGFLDASIFD 137 (241)
Q Consensus 70 ~~~~VLElGcGtGl~sl~la~~g~-~V~~tD~~~~~~~l~~~~~n~~~-----------n~~~~~~~~l~w~~~~~~~~~ 137 (241)
++++|||||||+|.++..+++.+. +|+++|+++ ++++.+++++.. +..++++...|..+.... +
T Consensus 75 ~~~~VLdiG~G~G~~~~~l~~~~~~~v~~vDid~--~~i~~ar~~~~~~~~l~~~~~~~~~~~v~~~~~D~~~~l~~--~ 150 (281)
T 1mjf_A 75 KPKRVLVIGGGDGGTVREVLQHDVDEVIMVEIDE--DVIMVSKDLIKIDNGLLEAMLNGKHEKAKLTIGDGFEFIKN--N 150 (281)
T ss_dssp CCCEEEEEECTTSHHHHHHTTSCCSEEEEEESCH--HHHHHHHHHTCTTTTHHHHHHTTCCSSEEEEESCHHHHHHH--C
T ss_pred CCCeEEEEcCCcCHHHHHHHhCCCCEEEEEECCH--HHHHHHHHHHhhccccccccccCCCCcEEEEECchHHHhcc--c
Confidence 567999999999999999998854 899999995 799999998721 233566666554322111 4
Q ss_pred CCCcEEEEcCCcCCC---cc--HHHHHHHHHHHhhcCCCeEEEEEe
Q 026274 138 LNPNIILGADVFYDA---SA--FDDLFATITYLLQSSPGSVFITTY 178 (241)
Q Consensus 138 ~~fDlIl~~dvly~~---~~--~~~ll~~~~~lL~~~~~~~~~~~~ 178 (241)
.+||+|++.- .+.. .. ...+++.+.++|+ +||++++..
T Consensus 151 ~~fD~Ii~d~-~~~~~~~~~l~~~~~l~~~~~~L~--pgG~lv~~~ 193 (281)
T 1mjf_A 151 RGFDVIIADS-TDPVGPAKVLFSEEFYRYVYDALN--NPGIYVTQA 193 (281)
T ss_dssp CCEEEEEEEC-CCCC-----TTSHHHHHHHHHHEE--EEEEEEEEE
T ss_pred CCeeEEEECC-CCCCCcchhhhHHHHHHHHHHhcC--CCcEEEEEc
Confidence 5899999743 3221 11 3778999999998 677777654
|
| >3reo_A (ISO)eugenol O-methyltransferase; directed evolution, saturation mutagenesis, regioselectivity transferase; HET: SAH EUG; 1.90A {Clarkia breweri} PDB: 3tky_A* 1kyz_A* 1kyw_A* | Back alignment and structure |
|---|
Probab=98.97 E-value=6.5e-09 Score=92.27 Aligned_cols=93 Identities=15% Similarity=0.032 Sum_probs=69.1
Q ss_pred CCCCeEEEecCCCCHHHHHHHHh--CCEEEEEcCCCcHHHHHHHHHHHHHcCCceEEEEeecCCCCcCcCCCCCcEEEEc
Q 026274 69 FSGANVVELGAGTSLPGLVAAKV--GSNVTLTDDSNRIEVLKNMRRVCEMNKLNCRVMGLTWGFLDASIFDLNPNIILGA 146 (241)
Q Consensus 69 ~~~~~VLElGcGtGl~sl~la~~--g~~V~~tD~~~~~~~l~~~~~n~~~n~~~~~~~~l~w~~~~~~~~~~~fDlIl~~ 146 (241)
..+.+|||+|||+|..+..+++. +.+++++|+ + ++++.++. ..++++...|+.+ +... . |+|+++
T Consensus 202 ~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~--~~~~~a~~-----~~~v~~~~~d~~~---~~p~-~-D~v~~~ 268 (368)
T 3reo_A 202 EGLTTIVDVGGGTGAVASMIVAKYPSINAINFDL-P--HVIQDAPA-----FSGVEHLGGDMFD---GVPK-G-DAIFIK 268 (368)
T ss_dssp TTCSEEEEETCTTSHHHHHHHHHCTTCEEEEEEC-H--HHHTTCCC-----CTTEEEEECCTTT---CCCC-C-SEEEEE
T ss_pred cCCCEEEEeCCCcCHHHHHHHHhCCCCEEEEEeh-H--HHHHhhhh-----cCCCEEEecCCCC---CCCC-C-CEEEEe
Confidence 34679999999999999999986 348999999 3 57766553 2457777777654 2222 3 999999
Q ss_pred CCcCCCcc--HHHHHHHHHHHhhcCCCeEEEE
Q 026274 147 DVFYDASA--FDDLFATITYLLQSSPGSVFIT 176 (241)
Q Consensus 147 dvly~~~~--~~~ll~~~~~lL~~~~~~~~~~ 176 (241)
.++++.++ ...+++.+.+.|+ |||.+++
T Consensus 269 ~vlh~~~~~~~~~~l~~~~~~L~--pgG~l~i 298 (368)
T 3reo_A 269 WICHDWSDEHCLKLLKNCYAALP--DHGKVIV 298 (368)
T ss_dssp SCGGGBCHHHHHHHHHHHHHHSC--TTCEEEE
T ss_pred chhhcCCHHHHHHHHHHHHHHcC--CCCEEEE
Confidence 99986544 4588999999998 4554444
|
| >2r6z_A UPF0341 protein in RSP 3' region; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 1.80A {Neisseria gonorrhoeae} | Back alignment and structure |
|---|
Probab=98.96 E-value=7.1e-10 Score=94.10 Aligned_cols=83 Identities=13% Similarity=0.091 Sum_probs=61.7
Q ss_pred CCCCeEEEecCCCCHHHHHHHHhCCEEEEEcCCCcH-----HHHHHHHHHHHHcCC--ceEEEEeecCCCCcCcCC--CC
Q 026274 69 FSGANVVELGAGTSLPGLVAAKVGSNVTLTDDSNRI-----EVLKNMRRVCEMNKL--NCRVMGLTWGFLDASIFD--LN 139 (241)
Q Consensus 69 ~~~~~VLElGcGtGl~sl~la~~g~~V~~tD~~~~~-----~~l~~~~~n~~~n~~--~~~~~~l~w~~~~~~~~~--~~ 139 (241)
.++.+|||+|||+|..++.+|+.|++|+++|+++.. ++++.+++|++.|++ ++++...|..+......+ .+
T Consensus 82 ~~~~~VLDlgcG~G~~a~~lA~~g~~V~~vD~s~~~~~ll~~~l~~a~~n~~~~~~~~ri~~~~~d~~~~l~~~~~~~~~ 161 (258)
T 2r6z_A 82 TAHPTVWDATAGLGRDSFVLASLGLTVTAFEQHPAVACLLSDGIRRALLNPETQDTAARINLHFGNAAEQMPALVKTQGK 161 (258)
T ss_dssp GGCCCEEETTCTTCHHHHHHHHTTCCEEEEECCHHHHHHHHHHHHHHHHSHHHHHHHTTEEEEESCHHHHHHHHHHHHCC
T ss_pred CCcCeEEEeeCccCHHHHHHHHhCCEEEEEECChhhhHHHHHHHHHHHhHHHhhCCccCeEEEECCHHHHHHhhhccCCC
Confidence 356799999999999999999999999999999400 588889999888775 377777666543221222 58
Q ss_pred CcEEEEcCCcCC
Q 026274 140 PNIILGADVFYD 151 (241)
Q Consensus 140 fDlIl~~dvly~ 151 (241)
||+|++..++.+
T Consensus 162 fD~V~~dP~~~~ 173 (258)
T 2r6z_A 162 PDIVYLDPMYPE 173 (258)
T ss_dssp CSEEEECCCC--
T ss_pred ccEEEECCCCCC
Confidence 999997655433
|
| >3gru_A Dimethyladenosine transferase; rossman fold, ribosomal assem adenosyl-L-methionine, rRNA, methyltransferase, RNA-binding processing; HET: AMP; 1.60A {Methanocaldococcus jannaschii} PDB: 3grr_A* 3grv_A* 3gry_A* 3fyd_A 3fyc_A* | Back alignment and structure |
|---|
Probab=98.96 E-value=2.9e-09 Score=92.02 Aligned_cols=99 Identities=13% Similarity=0.039 Sum_probs=69.5
Q ss_pred CcceEEeccHHHHHHHHHhccCCCCCCeEEEecCCCCHHHHHHHHhCCEEEEEcCCCcHHHHHHHHHHHHHcCCceEEEE
Q 026274 46 EYGLFVWPCSVILAEYVWQQRYRFSGANVVELGAGTSLPGLVAAKVGSNVTLTDDSNRIEVLKNMRRVCEMNKLNCRVMG 125 (241)
Q Consensus 46 ~~g~~~W~~s~~L~~~l~~~~~~~~~~~VLElGcGtGl~sl~la~~g~~V~~tD~~~~~~~l~~~~~n~~~n~~~~~~~~ 125 (241)
.+|....-...++ +.+.......++.+|||+|||+|.++..+++.+.+|+++|+++ ++++.+++++. ...++++..
T Consensus 27 ~~GQnfL~d~~i~-~~Iv~~l~~~~~~~VLEIG~G~G~lT~~La~~~~~V~aVEid~--~li~~a~~~~~-~~~~v~vi~ 102 (295)
T 3gru_A 27 KLGQCFLIDKNFV-NKAVESANLTKDDVVLEIGLGKGILTEELAKNAKKVYVIEIDK--SLEPYANKLKE-LYNNIEIIW 102 (295)
T ss_dssp ---CCEECCHHHH-HHHHHHTTCCTTCEEEEECCTTSHHHHHHHHHSSEEEEEESCG--GGHHHHHHHHH-HCSSEEEEE
T ss_pred ccCccccCCHHHH-HHHHHhcCCCCcCEEEEECCCchHHHHHHHhcCCEEEEEECCH--HHHHHHHHHhc-cCCCeEEEE
Confidence 4554333333333 4444444455778999999999999999999999999999997 59999999887 344677777
Q ss_pred eecCCCCcCcCCCCCcEEEEcCCcC
Q 026274 126 LTWGFLDASIFDLNPNIILGADVFY 150 (241)
Q Consensus 126 l~w~~~~~~~~~~~fDlIl~~dvly 150 (241)
.|+.+.. ..+.+||+|+++-+++
T Consensus 103 gD~l~~~--~~~~~fD~Iv~NlPy~ 125 (295)
T 3gru_A 103 GDALKVD--LNKLDFNKVVANLPYQ 125 (295)
T ss_dssp SCTTTSC--GGGSCCSEEEEECCGG
T ss_pred CchhhCC--cccCCccEEEEeCccc
Confidence 7766542 2234699999875544
|
| >2frx_A Hypothetical protein YEBU; rossmann-type S-adenosylmethionine-dependent methyltransfera domain; 2.90A {Escherichia coli} | Back alignment and structure |
|---|
Probab=98.96 E-value=7.4e-09 Score=95.18 Aligned_cols=135 Identities=10% Similarity=0.085 Sum_probs=89.0
Q ss_pred cHHHHHHHHHhccCCCCCCeEEEecCCCCHHHHHHHHh---CCEEEEEcCCCcHHHHHHHHHHHHHcCC-ceEEEEeecC
Q 026274 54 CSVILAEYVWQQRYRFSGANVVELGAGTSLPGLVAAKV---GSNVTLTDDSNRIEVLKNMRRVCEMNKL-NCRVMGLTWG 129 (241)
Q Consensus 54 ~s~~L~~~l~~~~~~~~~~~VLElGcGtGl~sl~la~~---g~~V~~tD~~~~~~~l~~~~~n~~~n~~-~~~~~~l~w~ 129 (241)
++.+++..+... ...+.+|||+|||+|..++.+|+. +.+|+++|+++ .+++.+++|++.+++ ++.+...|..
T Consensus 103 ~s~l~~~~L~~~--~~~g~~VLDl~aGpG~kt~~lA~~~~~~g~V~avDis~--~~l~~~~~n~~r~g~~nv~~~~~D~~ 178 (479)
T 2frx_A 103 SSMLPVAALFAD--GNAPQRVMDVAAAPGSKTTQISARMNNEGAILANEFSA--SRVKVLHANISRCGISNVALTHFDGR 178 (479)
T ss_dssp HHHHHHHHHTTT--TCCCSEEEESSCTTSHHHHHHHHHTTTCSEEEEECSSH--HHHHHHHHHHHHHTCCSEEEECCCST
T ss_pred HHHHHHHHhCcc--cCCCCEEEEeCCCCCHHHHHHHHhCCCCCEEEEEECCH--HHHHHHHHHHHHcCCCcEEEEeCCHH
Confidence 444445554321 126789999999999999999986 25899999995 699999999998887 5666655554
Q ss_pred CCCcCcCCCCCcEEEEcCCc------CCCc----------------cHHHHHHHHHHHhhcCCCeEEEEE-e--eccCch
Q 026274 130 FLDASIFDLNPNIILGADVF------YDAS----------------AFDDLFATITYLLQSSPGSVFITT-Y--HNRSGH 184 (241)
Q Consensus 130 ~~~~~~~~~~fDlIl~~dvl------y~~~----------------~~~~ll~~~~~lL~~~~~~~~~~~-~--~~r~~~ 184 (241)
+.. ...+.+||+|++..+. ...+ ....+++.+.++|+ +||.++.+ + ......
T Consensus 179 ~~~-~~~~~~fD~Il~D~PcSg~G~~~~~pd~~~~~~~~~~~~l~~~q~~iL~~a~~~Lk--pGG~LvysTcs~~~~Ene 255 (479)
T 2frx_A 179 VFG-AAVPEMFDAILLDAPCSGEGVVRKDPDALKNWSPESNQEIAATQRELIDSAFHALR--PGGTLVYSTCTLNQEENE 255 (479)
T ss_dssp THH-HHSTTCEEEEEEECCCCCGGGGGTCTTSSSSCCHHHHHHHHHHHHHHHHHHHHHEE--EEEEEEEEESCCSSTTTH
T ss_pred Hhh-hhccccCCEEEECCCcCCcccccCCHHHHhhcCHhHHHHHHHHHHHHHHHHHHhcC--CCCEEEEecccCCcccCH
Confidence 321 1134589999973222 1111 13467888899998 55554443 2 223344
Q ss_pred hHHHHHHHHcC
Q 026274 185 HLIEFLMVKWG 195 (241)
Q Consensus 185 ~~~~~~~~~~g 195 (241)
..+..++++++
T Consensus 256 ~vv~~~l~~~~ 266 (479)
T 2frx_A 256 AVCLWLKETYP 266 (479)
T ss_dssp HHHHHHHHHST
T ss_pred HHHHHHHHHCC
Confidence 55666777775
|
| >4a6d_A Hydroxyindole O-methyltransferase; melatonin, circadian clock; HET: SAM; 2.40A {Homo sapiens} PDB: 4a6e_A* | Back alignment and structure |
|---|
Probab=98.95 E-value=1.2e-08 Score=90.10 Aligned_cols=125 Identities=14% Similarity=0.094 Sum_probs=88.2
Q ss_pred CCCCeEEEecCCCCHHHHHHHHhCC--EEEEEcCCCcHHHHHHHHHHHHHcC-CceEEEEeecCCCCcCcCCCCCcEEEE
Q 026274 69 FSGANVVELGAGTSLPGLVAAKVGS--NVTLTDDSNRIEVLKNMRRVCEMNK-LNCRVMGLTWGFLDASIFDLNPNIILG 145 (241)
Q Consensus 69 ~~~~~VLElGcGtGl~sl~la~~g~--~V~~tD~~~~~~~l~~~~~n~~~n~-~~~~~~~l~w~~~~~~~~~~~fDlIl~ 145 (241)
....+|||+|||+|..++.+++... ++++.|.. ++++.+++++...+ .++++...|+.+. + ...+|+++.
T Consensus 178 ~~~~~v~DvGgG~G~~~~~l~~~~p~~~~~~~dlp---~v~~~a~~~~~~~~~~rv~~~~gD~~~~--~--~~~~D~~~~ 250 (353)
T 4a6d_A 178 SVFPLMCDLGGGAGALAKECMSLYPGCKITVFDIP---EVVWTAKQHFSFQEEEQIDFQEGDFFKD--P--LPEADLYIL 250 (353)
T ss_dssp GGCSEEEEETCTTSHHHHHHHHHCSSCEEEEEECH---HHHHHHHHHSCC--CCSEEEEESCTTTS--C--CCCCSEEEE
T ss_pred ccCCeEEeeCCCCCHHHHHHHHhCCCceeEeccCH---HHHHHHHHhhhhcccCceeeecCccccC--C--CCCceEEEe
Confidence 3567899999999999999999844 78888873 69999988776443 3577877776532 2 235899999
Q ss_pred cCCcCCCccH--HHHHHHHHHHhhcCCCeE-EEEEee---ccC---------------------chhHHHHHHHHcCCEE
Q 026274 146 ADVFYDASAF--DDLFATITYLLQSSPGSV-FITTYH---NRS---------------------GHHLIEFLMVKWGLKC 198 (241)
Q Consensus 146 ~dvly~~~~~--~~ll~~~~~lL~~~~~~~-~~~~~~---~r~---------------------~~~~~~~~~~~~g~~~ 198 (241)
..++++.++. ..+++.+.+.|+ |||. +++..- .+. +......++++.||+.
T Consensus 251 ~~vlh~~~d~~~~~iL~~~~~al~--pgg~lli~e~~~~~~~~~~~~~~~~dl~ml~~~~g~ert~~e~~~ll~~AGf~~ 328 (353)
T 4a6d_A 251 ARVLHDWADGKCSHLLERIYHTCK--PGGGILVIESLLDEDRRGPLLTQLYSLNMLVQTEGQERTPTHYHMLLSSAGFRD 328 (353)
T ss_dssp ESSGGGSCHHHHHHHHHHHHHHCC--TTCEEEEEECCCCTTSCCCHHHHHHHHHHHHSSSCCCCCHHHHHHHHHHHTCEE
T ss_pred eeecccCCHHHHHHHHHHHHhhCC--CCCEEEEEEeeeCCCCCCCHHHHHHHHHHHHhCCCcCCCHHHHHHHHHHCCCce
Confidence 9999886544 678999999998 4454 444321 111 1223445678899998
Q ss_pred EEEe
Q 026274 199 VKLV 202 (241)
Q Consensus 199 ~~i~ 202 (241)
+.+.
T Consensus 329 v~v~ 332 (353)
T 4a6d_A 329 FQFK 332 (353)
T ss_dssp EEEE
T ss_pred EEEE
Confidence 8874
|
| >3k0b_A Predicted N6-adenine-specific DNA methylase; methylase,PF01170, putative RNA methylase, PSI,MCSG, structu genomics; 1.50A {Listeria monocytogenes str} | Back alignment and structure |
|---|
Probab=98.95 E-value=9.8e-09 Score=92.12 Aligned_cols=117 Identities=12% Similarity=0.127 Sum_probs=85.2
Q ss_pred HHHHHHHHhccCCCCCCeEEEecCCCCHHHHHHHHhCC----------------------------------------EE
Q 026274 56 VILAEYVWQQRYRFSGANVVELGAGTSLPGLVAAKVGS----------------------------------------NV 95 (241)
Q Consensus 56 ~~L~~~l~~~~~~~~~~~VLElGcGtGl~sl~la~~g~----------------------------------------~V 95 (241)
..|+..+........+..|||.+||+|.+.+.+|..++ +|
T Consensus 187 e~lAa~ll~l~~~~~~~~vlDp~CGSGt~~ieaa~~~~~~apg~~R~f~f~~w~~~~~~~w~~~~~~a~~~~~~~~~~~V 266 (393)
T 3k0b_A 187 ETMAAALVLLTSWHPDRPFYDPVCGSGTIPIEAALIGQNIAPGFNREFVSETWDWMPKQVWADARQEAEDLANYDQPLNI 266 (393)
T ss_dssp HHHHHHHHHHSCCCTTSCEEETTCTTSHHHHHHHHHHTTCCTTTTSCCGGGGCTTSCHHHHHHHHHHHHHHCCTTCCCCE
T ss_pred HHHHHHHHHHhCCCCCCeEEEcCCCCCHHHHHHHHHhcCcCCCccccchhhccccCCHHHHHHHHHHHHHhhcccCCceE
Confidence 34555555444445678899999999999999988654 49
Q ss_pred EEEcCCCcHHHHHHHHHHHHHcCCc--eEEEEeecCCCCcCcCCCCCcEEEEcCCcCCC----ccHHHHHHHHHHHhhcC
Q 026274 96 TLTDDSNRIEVLKNMRRVCEMNKLN--CRVMGLTWGFLDASIFDLNPNIILGADVFYDA----SAFDDLFATITYLLQSS 169 (241)
Q Consensus 96 ~~tD~~~~~~~l~~~~~n~~~n~~~--~~~~~l~w~~~~~~~~~~~fDlIl~~dvly~~----~~~~~ll~~~~~lL~~~ 169 (241)
+++|+++ .|++.+++|+..+++. +.+...|+.+... ..+||+|+++.++... ..+..+.+.+.+.|+.-
T Consensus 267 ~GvDid~--~al~~Ar~Na~~~gl~~~I~~~~~D~~~~~~---~~~fD~Iv~NPPYg~rl~~~~~l~~ly~~lg~~lk~~ 341 (393)
T 3k0b_A 267 IGGDIDA--RLIEIAKQNAVEAGLGDLITFRQLQVADFQT---EDEYGVVVANPPYGERLEDEEAVRQLYREMGIVYKRM 341 (393)
T ss_dssp EEEESCH--HHHHHHHHHHHHTTCTTCSEEEECCGGGCCC---CCCSCEEEECCCCCCSHHHHHHHHHHHHHHHHHHHTC
T ss_pred EEEECCH--HHHHHHHHHHHHcCCCCceEEEECChHhCCC---CCCCCEEEECCCCccccCCchhHHHHHHHHHHHHhcC
Confidence 9999995 7999999999999874 7788777765432 3489999988776442 34566777777787753
Q ss_pred CCe-EEEEE
Q 026274 170 PGS-VFITT 177 (241)
Q Consensus 170 ~~~-~~~~~ 177 (241)
+++ +++++
T Consensus 342 ~g~~~~iit 350 (393)
T 3k0b_A 342 PTWSVYVLT 350 (393)
T ss_dssp TTCEEEEEE
T ss_pred CCCEEEEEE
Confidence 343 44444
|
| >2pt6_A Spermidine synthase; transferase, structural genomics consor SGC,dcadoMet complex; HET: S4M 1PG; 2.00A {Plasmodium falciparum} PDB: 2pss_A* 2pt9_A* | Back alignment and structure |
|---|
Probab=98.95 E-value=8.4e-10 Score=96.49 Aligned_cols=106 Identities=12% Similarity=0.092 Sum_probs=76.6
Q ss_pred CCCeEEEecCCCCHHHHHHHHh--CCEEEEEcCCCcHHHHHHHHHHHHH--c---CCceEEEEeecCCCCcCcCCCCCcE
Q 026274 70 SGANVVELGAGTSLPGLVAAKV--GSNVTLTDDSNRIEVLKNMRRVCEM--N---KLNCRVMGLTWGFLDASIFDLNPNI 142 (241)
Q Consensus 70 ~~~~VLElGcGtGl~sl~la~~--g~~V~~tD~~~~~~~l~~~~~n~~~--n---~~~~~~~~l~w~~~~~~~~~~~fDl 142 (241)
++++|||||||+|.++..+++. +.+|+++|+++ ++++.+++|+.. + ..++++...|+.+... ..+++||+
T Consensus 116 ~~~~VLdiG~G~G~~~~~l~~~~~~~~v~~vDis~--~~l~~ar~~~~~~~~~~~~~~v~~~~~D~~~~l~-~~~~~fDv 192 (321)
T 2pt6_A 116 EPKNVLVVGGGDGGIIRELCKYKSVENIDICEIDE--TVIEVSKIYFKNISCGYEDKRVNVFIEDASKFLE-NVTNTYDV 192 (321)
T ss_dssp SCCEEEEEECTTCHHHHHHTTCTTCCEEEEEESCH--HHHHHHHHHCTTTSGGGGSTTEEEEESCHHHHHH-HCCSCEEE
T ss_pred CCCEEEEEcCCccHHHHHHHHcCCCCEEEEEECCH--HHHHHHHHHHHhhccccCCCcEEEEEccHHHHHh-hcCCCceE
Confidence 4579999999999999999987 45999999995 799999998765 2 3457777766543221 12458999
Q ss_pred EEEcCC--cCCCccH--HHHHHHHHHHhhcCCCeEEEEEeec
Q 026274 143 ILGADV--FYDASAF--DDLFATITYLLQSSPGSVFITTYHN 180 (241)
Q Consensus 143 Il~~dv--ly~~~~~--~~ll~~~~~lL~~~~~~~~~~~~~~ 180 (241)
|++.-. +...... ..+++.+.++|+ +||++++....
T Consensus 193 Ii~d~~~p~~~~~~l~~~~~l~~~~~~Lk--pgG~lv~~~~~ 232 (321)
T 2pt6_A 193 IIVDSSDPIGPAETLFNQNFYEKIYNALK--PNGYCVAQCES 232 (321)
T ss_dssp EEEECCCSSSGGGGGSSHHHHHHHHHHEE--EEEEEEEEECC
T ss_pred EEECCcCCCCcchhhhHHHHHHHHHHhcC--CCcEEEEEcCC
Confidence 997432 1111111 789999999998 67877776433
|
| >1inl_A Spermidine synthase; beta-barrel, rossman fold, structural genomics, PSI, protein structure initiative; 1.50A {Thermotoga maritima} SCOP: c.66.1.17 PDB: 1jq3_A* | Back alignment and structure |
|---|
Probab=98.94 E-value=1.7e-09 Score=93.42 Aligned_cols=103 Identities=13% Similarity=0.085 Sum_probs=73.8
Q ss_pred CCCeEEEecCCCCHHHHHHHHh-C-CEEEEEcCCCcHHHHHHHHHHHHH--c---CCceEEEEeecCCCCcCcCCCCCcE
Q 026274 70 SGANVVELGAGTSLPGLVAAKV-G-SNVTLTDDSNRIEVLKNMRRVCEM--N---KLNCRVMGLTWGFLDASIFDLNPNI 142 (241)
Q Consensus 70 ~~~~VLElGcGtGl~sl~la~~-g-~~V~~tD~~~~~~~l~~~~~n~~~--n---~~~~~~~~l~w~~~~~~~~~~~fDl 142 (241)
++++|||||||+|..+..+++. + .+|+++|+++ ++++.+++|+.. + ..++++...|..+.... .+.+||+
T Consensus 90 ~~~~VLdiG~G~G~~~~~l~~~~~~~~v~~vDid~--~~~~~a~~~~~~~~~~~~~~~v~~~~~D~~~~l~~-~~~~fD~ 166 (296)
T 1inl_A 90 NPKKVLIIGGGDGGTLREVLKHDSVEKAILCEVDG--LVIEAARKYLKQTSCGFDDPRAEIVIANGAEYVRK-FKNEFDV 166 (296)
T ss_dssp SCCEEEEEECTTCHHHHHHTTSTTCSEEEEEESCH--HHHHHHHHHCHHHHGGGGCTTEEEEESCHHHHGGG-CSSCEEE
T ss_pred CCCEEEEEcCCcCHHHHHHHhcCCCCEEEEEECCH--HHHHHHHHHhHhhccccCCCceEEEECcHHHHHhh-CCCCceE
Confidence 4579999999999999999987 3 5999999995 799999998753 2 34577776665432211 2458999
Q ss_pred EEEcCCcCC-Cc-----cHHHHHHHHHHHhhcCCCeEEEEEe
Q 026274 143 ILGADVFYD-AS-----AFDDLFATITYLLQSSPGSVFITTY 178 (241)
Q Consensus 143 Il~~dvly~-~~-----~~~~ll~~~~~lL~~~~~~~~~~~~ 178 (241)
|++. +... .. ....+++.+.++|+ +||++++..
T Consensus 167 Ii~d-~~~~~~~~~~~l~~~~~l~~~~~~Lk--pgG~lv~~~ 205 (296)
T 1inl_A 167 IIID-STDPTAGQGGHLFTEEFYQACYDALK--EDGVFSAET 205 (296)
T ss_dssp EEEE-C----------CCSHHHHHHHHHHEE--EEEEEEEEC
T ss_pred EEEc-CCCcccCchhhhhHHHHHHHHHHhcC--CCcEEEEEc
Confidence 9963 2211 11 23788999999998 677777764
|
| >2ih2_A Modification methylase TAQI; DNA, DNA methyltransferase, target base partner, 5-methylpyr 2(1H)-ONE, base flipping; HET: 5PY 6MA NEA; 1.61A {Thermus aquaticus} SCOP: c.66.1.27 d.287.1.1 PDB: 2ibs_A* 2ibt_A* 2ih4_A* 2ih5_A* 2jg3_A* 2np6_A* 2np7_A* 1aqj_A* 1aqi_A* 2adm_A* 1g38_A* | Back alignment and structure |
|---|
Probab=98.93 E-value=1.7e-08 Score=90.46 Aligned_cols=107 Identities=10% Similarity=0.049 Sum_probs=73.7
Q ss_pred HHHHHHHHhccCCCCCCeEEEecCCCCHHHHHHHHh---CCEEEEEcCCCcHHHHHHHHHHHHHcCCceEEEEeecCCCC
Q 026274 56 VILAEYVWQQRYRFSGANVVELGAGTSLPGLVAAKV---GSNVTLTDDSNRIEVLKNMRRVCEMNKLNCRVMGLTWGFLD 132 (241)
Q Consensus 56 ~~L~~~l~~~~~~~~~~~VLElGcGtGl~sl~la~~---g~~V~~tD~~~~~~~l~~~~~n~~~n~~~~~~~~l~w~~~~ 132 (241)
..+++++.......++.+|||+|||+|.+++.+++. +.+++++|+++ ++++.+ .++.+...|+.+..
T Consensus 25 ~~l~~~~~~~~~~~~~~~vLD~gcGtG~~~~~~~~~~~~~~~i~gvDi~~--~~~~~a--------~~~~~~~~D~~~~~ 94 (421)
T 2ih2_A 25 PEVVDFMVSLAEAPRGGRVLEPACAHGPFLRAFREAHGTAYRFVGVEIDP--KALDLP--------PWAEGILADFLLWE 94 (421)
T ss_dssp HHHHHHHHHHCCCCTTCEEEEETCTTCHHHHHHHHHHCSCSEEEEEESCT--TTCCCC--------TTEEEEESCGGGCC
T ss_pred HHHHHHHHHhhccCCCCEEEECCCCChHHHHHHHHHhCCCCeEEEEECCH--HHHHhC--------CCCcEEeCChhhcC
Confidence 456677666544345679999999999999999974 46999999997 366544 24566666654432
Q ss_pred cCcCCCCCcEEEEcCCcCCCcc-----------------------------HHHHHHHHHHHhhcCCCeEEEEE
Q 026274 133 ASIFDLNPNIILGADVFYDASA-----------------------------FDDLFATITYLLQSSPGSVFITT 177 (241)
Q Consensus 133 ~~~~~~~fDlIl~~dvly~~~~-----------------------------~~~ll~~~~~lL~~~~~~~~~~~ 177 (241)
...+||+|++++++..... ...+++.+.++|++ +|.+.+.
T Consensus 95 ---~~~~fD~Ii~NPPy~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fl~~~~~~Lk~--~G~~~~i 163 (421)
T 2ih2_A 95 ---PGEAFDLILGNPPYGIVGEASKYPIHVFKAVKDLYKKAFSTWKGKYNLYGAFLEKAVRLLKP--GGVLVFV 163 (421)
T ss_dssp ---CSSCEEEEEECCCCCCBSCTTTCSBCCCHHHHHHHHHHCTTCCTTCCHHHHHHHHHHHHEEE--EEEEEEE
T ss_pred ---ccCCCCEEEECcCccCcccccccccccCHHHHHHHHHhhhcccCCccHHHHHHHHHHHHhCC--CCEEEEE
Confidence 2358999999988754322 12567888899984 4544433
|
| >1zq9_A Probable dimethyladenosine transferase; SGC, structural genomics, structural genomics consortium; HET: SAM; 1.90A {Homo sapiens} SCOP: c.66.1.24 | Back alignment and structure |
|---|
Probab=98.93 E-value=4.8e-09 Score=90.06 Aligned_cols=88 Identities=9% Similarity=-0.000 Sum_probs=66.8
Q ss_pred HHHHHHhccCCCCCCeEEEecCCCCHHHHHHHHhCCEEEEEcCCCcHHHHHHHHHHHHHcCC--ceEEEEeecCCCCcCc
Q 026274 58 LAEYVWQQRYRFSGANVVELGAGTSLPGLVAAKVGSNVTLTDDSNRIEVLKNMRRVCEMNKL--NCRVMGLTWGFLDASI 135 (241)
Q Consensus 58 L~~~l~~~~~~~~~~~VLElGcGtGl~sl~la~~g~~V~~tD~~~~~~~l~~~~~n~~~n~~--~~~~~~l~w~~~~~~~ 135 (241)
+++.+.......++.+|||+|||+|.++..+++.+.+|+++|+++ .+++.+++++..++. ++++...|..+...
T Consensus 16 i~~~i~~~~~~~~~~~VLDiG~G~G~lt~~L~~~~~~v~~vD~~~--~~~~~a~~~~~~~~~~~~v~~~~~D~~~~~~-- 91 (285)
T 1zq9_A 16 IINSIIDKAALRPTDVVLEVGPGTGNMTVKLLEKAKKVVACELDP--RLVAELHKRVQGTPVASKLQVLVGDVLKTDL-- 91 (285)
T ss_dssp HHHHHHHHTCCCTTCEEEEECCTTSTTHHHHHHHSSEEEEEESCH--HHHHHHHHHHTTSTTGGGEEEEESCTTTSCC--
T ss_pred HHHHHHHhcCCCCCCEEEEEcCcccHHHHHHHhhCCEEEEEECCH--HHHHHHHHHHHhcCCCCceEEEEcceecccc--
Confidence 344444444445778999999999999999999999999999995 699999999876654 57777766654321
Q ss_pred CCCCCcEEEEcCCcCC
Q 026274 136 FDLNPNIILGADVFYD 151 (241)
Q Consensus 136 ~~~~fDlIl~~dvly~ 151 (241)
.+||+|+++-+++.
T Consensus 92 --~~fD~vv~nlpy~~ 105 (285)
T 1zq9_A 92 --PFFDTCVANLPYQI 105 (285)
T ss_dssp --CCCSEEEEECCGGG
T ss_pred --hhhcEEEEecCccc
Confidence 27999998655543
|
| >2o07_A Spermidine synthase; structural genomics, structural genomics consortium, SGC, transferase; HET: SPD MTA; 1.89A {Homo sapiens} SCOP: c.66.1.17 PDB: 2o06_A* 2o05_A* 2o0l_A* 3rw9_A* | Back alignment and structure |
|---|
Probab=98.93 E-value=2.8e-09 Score=92.44 Aligned_cols=103 Identities=9% Similarity=-0.034 Sum_probs=73.3
Q ss_pred CCCeEEEecCCCCHHHHHHHHhC--CEEEEEcCCCcHHHHHHHHHHHHH-----cCCceEEEEeecCCCCcCcCCCCCcE
Q 026274 70 SGANVVELGAGTSLPGLVAAKVG--SNVTLTDDSNRIEVLKNMRRVCEM-----NKLNCRVMGLTWGFLDASIFDLNPNI 142 (241)
Q Consensus 70 ~~~~VLElGcGtGl~sl~la~~g--~~V~~tD~~~~~~~l~~~~~n~~~-----n~~~~~~~~l~w~~~~~~~~~~~fDl 142 (241)
++++|||||||+|..+..+++.+ .+|+++|+++ ++++.+++++.. +..++++...|..+.... .+.+||+
T Consensus 95 ~~~~VLdiG~G~G~~~~~l~~~~~~~~v~~vDid~--~~i~~ar~~~~~~~~~~~~~rv~v~~~Da~~~l~~-~~~~fD~ 171 (304)
T 2o07_A 95 NPRKVLIIGGGDGGVLREVVKHPSVESVVQCEIDE--DVIQVSKKFLPGMAIGYSSSKLTLHVGDGFEFMKQ-NQDAFDV 171 (304)
T ss_dssp SCCEEEEEECTTSHHHHHHTTCTTCCEEEEEESCH--HHHHHHHHHCHHHHGGGGCTTEEEEESCHHHHHHT-CSSCEEE
T ss_pred CCCEEEEECCCchHHHHHHHHcCCCCEEEEEECCH--HHHHHHHHHhHHhhcccCCCcEEEEECcHHHHHhh-CCCCceE
Confidence 56899999999999999999874 5999999995 799999998764 234567666554332111 2458999
Q ss_pred EEEcCCcCCCc-----cHHHHHHHHHHHhhcCCCeEEEEEe
Q 026274 143 ILGADVFYDAS-----AFDDLFATITYLLQSSPGSVFITTY 178 (241)
Q Consensus 143 Il~~dvly~~~-----~~~~ll~~~~~lL~~~~~~~~~~~~ 178 (241)
|++. ...... ....+++.+.++|+ +||++++..
T Consensus 172 Ii~d-~~~~~~~~~~l~~~~~l~~~~~~Lk--pgG~lv~~~ 209 (304)
T 2o07_A 172 IITD-SSDPMGPAESLFKESYYQLMKTALK--EDGVLCCQG 209 (304)
T ss_dssp EEEE-CC-----------CHHHHHHHHHEE--EEEEEEEEE
T ss_pred EEEC-CCCCCCcchhhhHHHHHHHHHhccC--CCeEEEEec
Confidence 9974 322111 23568999999998 677777664
|
| >2b2c_A Spermidine synthase; beta-alpha, transferase; 2.50A {Caenorhabditis elegans} SCOP: c.66.1.17 | Back alignment and structure |
|---|
Probab=98.93 E-value=1.1e-09 Score=95.45 Aligned_cols=103 Identities=11% Similarity=0.025 Sum_probs=71.9
Q ss_pred CCCeEEEecCCCCHHHHHHHHh--CCEEEEEcCCCcHHHHHHHHHHHHHc-----CCceEEEEeecCCCCcCcCCCCCcE
Q 026274 70 SGANVVELGAGTSLPGLVAAKV--GSNVTLTDDSNRIEVLKNMRRVCEMN-----KLNCRVMGLTWGFLDASIFDLNPNI 142 (241)
Q Consensus 70 ~~~~VLElGcGtGl~sl~la~~--g~~V~~tD~~~~~~~l~~~~~n~~~n-----~~~~~~~~l~w~~~~~~~~~~~fDl 142 (241)
++++|||||||+|..+..+++. +.+|+++|+++ ++++.+++++... ..++++...|..+.... .+.+||+
T Consensus 108 ~~~~VLdIG~G~G~~~~~l~~~~~~~~v~~vDid~--~~i~~Ar~~~~~~~~~~~~~rv~~~~~D~~~~l~~-~~~~fD~ 184 (314)
T 2b2c_A 108 DPKRVLIIGGGDGGILREVLKHESVEKVTMCEIDE--MVIDVAKKFLPGMSCGFSHPKLDLFCGDGFEFLKN-HKNEFDV 184 (314)
T ss_dssp SCCEEEEESCTTSHHHHHHTTCTTCCEEEEECSCH--HHHHHHHHHCTTTSGGGGCTTEEEECSCHHHHHHH-CTTCEEE
T ss_pred CCCEEEEEcCCcCHHHHHHHHcCCCCEEEEEECCH--HHHHHHHHHHHHhccccCCCCEEEEEChHHHHHHh-cCCCceE
Confidence 4579999999999999999987 35999999995 7999999987543 34566665554432111 2458999
Q ss_pred EEEcCCcCC---Ccc-H-HHHHHHHHHHhhcCCCeEEEEEe
Q 026274 143 ILGADVFYD---ASA-F-DDLFATITYLLQSSPGSVFITTY 178 (241)
Q Consensus 143 Il~~dvly~---~~~-~-~~ll~~~~~lL~~~~~~~~~~~~ 178 (241)
|++. .... ... . ..+++.+.++|+ +||++++..
T Consensus 185 Ii~d-~~~~~~~~~~l~t~~~l~~~~~~Lk--pgG~lv~~~ 222 (314)
T 2b2c_A 185 IITD-SSDPVGPAESLFGQSYYELLRDALK--EDGILSSQG 222 (314)
T ss_dssp EEEC-CC-------------HHHHHHHHEE--EEEEEEEEC
T ss_pred EEEc-CCCCCCcchhhhHHHHHHHHHhhcC--CCeEEEEEC
Confidence 9973 3221 111 1 688999999998 678877764
|
| >2okc_A Type I restriction enzyme stysji M protein; NP_813429.1, N-6 DNA methylase, type I restriction enzyme ST protein; HET: SAM; 2.20A {Bacteroides thetaiotaomicron vpi-5482} SCOP: c.66.1.45 | Back alignment and structure |
|---|
Probab=98.91 E-value=2.5e-08 Score=90.71 Aligned_cols=138 Identities=12% Similarity=0.071 Sum_probs=91.0
Q ss_pred HHHHHHhccCCCCCCeEEEecCCCCHHHHHHHHh---------------CCEEEEEcCCCcHHHHHHHHHHHHHcCC---
Q 026274 58 LAEYVWQQRYRFSGANVVELGAGTSLPGLVAAKV---------------GSNVTLTDDSNRIEVLKNMRRVCEMNKL--- 119 (241)
Q Consensus 58 L~~~l~~~~~~~~~~~VLElGcGtGl~sl~la~~---------------g~~V~~tD~~~~~~~l~~~~~n~~~n~~--- 119 (241)
+++++.+......+.+|||.|||||.+.+.+++. +.+++|+|+++ .++..++.|+..++.
T Consensus 159 v~~~mv~~l~~~~~~~VlDpacGsG~fl~~~~~~l~~~~~~~~~~~~~~~~~i~G~Ei~~--~~~~lA~~nl~l~g~~~~ 236 (445)
T 2okc_A 159 LIQAMVDCINPQMGETVCDPACGTGGFLLTAYDYMKGQSASKEKRDFLRDKALHGVDNTP--LVVTLASMNLYLHGIGTD 236 (445)
T ss_dssp HHHHHHHHHCCCTTCCEEETTCTTCHHHHHHHHHHHTCC-CCHHHHHHHHTTEEEEESCH--HHHHHHHHHHHHTTCCSS
T ss_pred HHHHHHHHhCCCCCCEEeccCCCcchHHHHHHHHHHHhcCCHHHHHhhcCeEEEEEeCCH--HHHHHHHHHHHHhCCCcC
Confidence 4455544434456779999999999888888764 35799999995 699999999998887
Q ss_pred ceEEEEeecCCCCcCcCCCCCcEEEEcCCcCCCcc-----------------HHHHHHHHHHHhhcCCCeEEEEEee--c
Q 026274 120 NCRVMGLTWGFLDASIFDLNPNIILGADVFYDASA-----------------FDDLFATITYLLQSSPGSVFITTYH--N 180 (241)
Q Consensus 120 ~~~~~~l~w~~~~~~~~~~~fDlIl~~dvly~~~~-----------------~~~ll~~~~~lL~~~~~~~~~~~~~--~ 180 (241)
...+...|..... ...+||+|++++++..... .-.++..+.++|++++...++++.. .
T Consensus 237 ~~~i~~gD~l~~~---~~~~fD~Iv~NPPf~~~~~~~~~~~~~~~~~~~~~~~~~fl~~~~~~Lk~gG~~a~V~p~~~L~ 313 (445)
T 2okc_A 237 RSPIVCEDSLEKE---PSTLVDVILANPPFGTRPAGSVDINRPDFYVETKNNQLNFLQHMMLMLKTGGRAAVVLPDNVLF 313 (445)
T ss_dssp CCSEEECCTTTSC---CSSCEEEEEECCCSSCCCTTCCCCCCTTSSSCCSCHHHHHHHHHHHHEEEEEEEEEEEEHHHHH
T ss_pred CCCEeeCCCCCCc---ccCCcCEEEECCCCCCcccccchhhHhhcCCCCcchHHHHHHHHHHHhccCCEEEEEECCcccc
Confidence 5566665543321 2238999999988765321 1367888889998543334444421 1
Q ss_pred cCc--hhHHHHHHHHcCCEEEE
Q 026274 181 RSG--HHLIEFLMVKWGLKCVK 200 (241)
Q Consensus 181 r~~--~~~~~~~~~~~g~~~~~ 200 (241)
+.. ....+.+.+..++....
T Consensus 314 ~~~~~~~iR~~L~~~~~l~~ii 335 (445)
T 2okc_A 314 EAGAGETIRKRLLQDFNLHTIL 335 (445)
T ss_dssp CSTHHHHHHHHHHHHEEEEEEE
T ss_pred cCcHHHHHHHHHHhcCcEEEEE
Confidence 221 23344566666665544
|
| >1uir_A Polyamine aminopropyltransferase; spermidien synthase, spermine synthase, riken STR genomics/proteomics initiative, RSGI; 2.00A {Thermus thermophilus} SCOP: c.66.1.17 PDB: 3anx_A* | Back alignment and structure |
|---|
Probab=98.91 E-value=1.8e-09 Score=94.06 Aligned_cols=104 Identities=11% Similarity=0.007 Sum_probs=75.2
Q ss_pred CCCeEEEecCCCCHHHHHHHHh--CCEEEEEcCCCcHHHHHHHHHHHHH-c-----CCceEEEEeecCCCCcCcCCCCCc
Q 026274 70 SGANVVELGAGTSLPGLVAAKV--GSNVTLTDDSNRIEVLKNMRRVCEM-N-----KLNCRVMGLTWGFLDASIFDLNPN 141 (241)
Q Consensus 70 ~~~~VLElGcGtGl~sl~la~~--g~~V~~tD~~~~~~~l~~~~~n~~~-n-----~~~~~~~~l~w~~~~~~~~~~~fD 141 (241)
++++|||||||+|..+..+++. +.+|+++|+++ ++++.+++++.. + ..++++...|..+... ..+++||
T Consensus 77 ~~~~VLdiG~G~G~~~~~l~~~~~~~~v~~vDid~--~~i~~ar~~~~~~~~~~~~~~~v~~~~~D~~~~l~-~~~~~fD 153 (314)
T 1uir_A 77 EPKRVLIVGGGEGATLREVLKHPTVEKAVMVDIDG--ELVEVAKRHMPEWHQGAFDDPRAVLVIDDARAYLE-RTEERYD 153 (314)
T ss_dssp CCCEEEEEECTTSHHHHHHTTSTTCCEEEEEESCH--HHHHHHHHHCHHHHTTGGGCTTEEEEESCHHHHHH-HCCCCEE
T ss_pred CCCeEEEEcCCcCHHHHHHHhcCCCCEEEEEECCH--HHHHHHHHHhHhhccccccCCceEEEEchHHHHHH-hcCCCcc
Confidence 5679999999999999999987 45999999995 799999998753 2 3457777666543211 1246899
Q ss_pred EEEEcCCcCC---C--cc--HHHHHHHHHHHhhcCCCeEEEEEe
Q 026274 142 IILGADVFYD---A--SA--FDDLFATITYLLQSSPGSVFITTY 178 (241)
Q Consensus 142 lIl~~dvly~---~--~~--~~~ll~~~~~lL~~~~~~~~~~~~ 178 (241)
+|++.-.... . .. ...+++.+.++|+ +||++++..
T Consensus 154 ~Ii~d~~~~~~~~~~~~~l~~~~~l~~~~~~Lk--pgG~lv~~~ 195 (314)
T 1uir_A 154 VVIIDLTDPVGEDNPARLLYTVEFYRLVKAHLN--PGGVMGMQT 195 (314)
T ss_dssp EEEEECCCCBSTTCGGGGGSSHHHHHHHHHTEE--EEEEEEEEE
T ss_pred EEEECCCCcccccCcchhccHHHHHHHHHHhcC--CCcEEEEEc
Confidence 9998543322 1 01 4788999999998 667666553
|
| >3tqs_A Ribosomal RNA small subunit methyltransferase A; protein synthesis; 1.98A {Coxiella burnetii} SCOP: c.66.1.0 | Back alignment and structure |
|---|
Probab=98.91 E-value=3.3e-09 Score=89.86 Aligned_cols=87 Identities=13% Similarity=0.076 Sum_probs=63.8
Q ss_pred HHHHHhccCCCCCCeEEEecCCCCHHHHHHHHhCCEEEEEcCCCcHHHHHHHHHHHHHcCCceEEEEeecCCCCcCc-C-
Q 026274 59 AEYVWQQRYRFSGANVVELGAGTSLPGLVAAKVGSNVTLTDDSNRIEVLKNMRRVCEMNKLNCRVMGLTWGFLDASI-F- 136 (241)
Q Consensus 59 ~~~l~~~~~~~~~~~VLElGcGtGl~sl~la~~g~~V~~tD~~~~~~~l~~~~~n~~~n~~~~~~~~l~w~~~~~~~-~- 136 (241)
++.+........+.+|||||||+|.++..+++.+++|+++|+++ +|++.+++++.. ..++++...|..+...+. .
T Consensus 18 ~~~iv~~~~~~~~~~VLEIG~G~G~lt~~La~~~~~V~avEid~--~~~~~~~~~~~~-~~~v~~i~~D~~~~~~~~~~~ 94 (255)
T 3tqs_A 18 LQKIVSAIHPQKTDTLVEIGPGRGALTDYLLTECDNLALVEIDR--DLVAFLQKKYNQ-QKNITIYQNDALQFDFSSVKT 94 (255)
T ss_dssp HHHHHHHHCCCTTCEEEEECCTTTTTHHHHTTTSSEEEEEECCH--HHHHHHHHHHTT-CTTEEEEESCTTTCCGGGSCC
T ss_pred HHHHHHhcCCCCcCEEEEEcccccHHHHHHHHhCCEEEEEECCH--HHHHHHHHHHhh-CCCcEEEEcchHhCCHHHhcc
Confidence 34444444455678999999999999999999999999999995 799999998865 446777777776553221 1
Q ss_pred CCCCcEEEEcCCc
Q 026274 137 DLNPNIILGADVF 149 (241)
Q Consensus 137 ~~~fDlIl~~dvl 149 (241)
..+|| |+++-++
T Consensus 95 ~~~~~-vv~NlPY 106 (255)
T 3tqs_A 95 DKPLR-VVGNLPY 106 (255)
T ss_dssp SSCEE-EEEECCH
T ss_pred CCCeE-EEecCCc
Confidence 24677 6665444
|
| >3ldg_A Putative uncharacterized protein SMU.472; YPSC, methyltransferase, transferase; HET: SAH; 1.96A {Streptococcus mutans} | Back alignment and structure |
|---|
Probab=98.90 E-value=2e-08 Score=89.85 Aligned_cols=117 Identities=15% Similarity=0.156 Sum_probs=86.3
Q ss_pred HHHHHHHHhccCCCCCCeEEEecCCCCHHHHHHHHhCC----------------------------------------EE
Q 026274 56 VILAEYVWQQRYRFSGANVVELGAGTSLPGLVAAKVGS----------------------------------------NV 95 (241)
Q Consensus 56 ~~L~~~l~~~~~~~~~~~VLElGcGtGl~sl~la~~g~----------------------------------------~V 95 (241)
..|+..+........+..+||.+||+|.+.+.+|..+. +|
T Consensus 180 e~LAaall~l~~~~~~~~llDp~CGSGt~lIEAa~~a~~iapg~~R~f~f~~w~~~~~~~w~~~~~~a~~~~~~~~~~~v 259 (384)
T 3ldg_A 180 ENMAAAIILLSNWFPDKPFVDPTCGSGTFCIEAAMIGMNIAPGFNRDFAFEEWPWVDEALVTRVRNEADEQADYDIQLDI 259 (384)
T ss_dssp HHHHHHHHHHTTCCTTSCEEETTCTTSHHHHHHHHHHTTCCTTTTCCCGGGGCTTSCHHHHHHHHHHHHHHCCTTCCCCE
T ss_pred HHHHHHHHHHhCCCCCCeEEEeCCcCCHHHHHHHHHhcCcCCCccccchhhhhccCCHHHHHHHHHHHHHhhhccCCceE
Confidence 45666655544445678899999999999999987654 49
Q ss_pred EEEcCCCcHHHHHHHHHHHHHcCCc--eEEEEeecCCCCcCcCCCCCcEEEEcCCcCCC----ccHHHHHHHHHHHhhcC
Q 026274 96 TLTDDSNRIEVLKNMRRVCEMNKLN--CRVMGLTWGFLDASIFDLNPNIILGADVFYDA----SAFDDLFATITYLLQSS 169 (241)
Q Consensus 96 ~~tD~~~~~~~l~~~~~n~~~n~~~--~~~~~l~w~~~~~~~~~~~fDlIl~~dvly~~----~~~~~ll~~~~~lL~~~ 169 (241)
+++|+++ .|++.+++|+..+++. +++...|..+... ..+||+|+++.++... .....+.+.+.+.|+.-
T Consensus 260 ~GvDid~--~al~~Ar~Na~~~gl~~~I~~~~~D~~~l~~---~~~fD~Iv~NPPYG~rl~~~~~l~~ly~~lg~~lk~~ 334 (384)
T 3ldg_A 260 SGFDFDG--RMVEIARKNAREVGLEDVVKLKQMRLQDFKT---NKINGVLISNPPYGERLLDDKAVDILYNEMGETFAPL 334 (384)
T ss_dssp EEEESCH--HHHHHHHHHHHHTTCTTTEEEEECCGGGCCC---CCCSCEEEECCCCTTTTSCHHHHHHHHHHHHHHHTTC
T ss_pred EEEECCH--HHHHHHHHHHHHcCCCCceEEEECChHHCCc---cCCcCEEEECCchhhccCCHHHHHHHHHHHHHHHhhC
Confidence 9999995 7999999999999874 7777777665432 2489999988776532 35677778788888753
Q ss_pred CC-eEEEEE
Q 026274 170 PG-SVFITT 177 (241)
Q Consensus 170 ~~-~~~~~~ 177 (241)
+| .+++++
T Consensus 335 ~g~~~~iit 343 (384)
T 3ldg_A 335 KTWSQFILT 343 (384)
T ss_dssp TTSEEEEEE
T ss_pred CCcEEEEEE
Confidence 33 344554
|
| >3p9c_A Caffeic acid O-methyltransferase; S-adenosylmethionine dependent O-methyltransferase; HET: SAH; 1.80A {Lolium perenne} PDB: 3p9i_A* 3p9k_A* | Back alignment and structure |
|---|
Probab=98.88 E-value=1.9e-08 Score=89.10 Aligned_cols=93 Identities=13% Similarity=0.002 Sum_probs=69.5
Q ss_pred CCCCeEEEecCCCCHHHHHHHHh--CCEEEEEcCCCcHHHHHHHHHHHHHcCCceEEEEeecCCCCcCcCCCCCcEEEEc
Q 026274 69 FSGANVVELGAGTSLPGLVAAKV--GSNVTLTDDSNRIEVLKNMRRVCEMNKLNCRVMGLTWGFLDASIFDLNPNIILGA 146 (241)
Q Consensus 69 ~~~~~VLElGcGtGl~sl~la~~--g~~V~~tD~~~~~~~l~~~~~n~~~n~~~~~~~~l~w~~~~~~~~~~~fDlIl~~ 146 (241)
..+.+|||+|||+|..+..+++. +.+++++|+ + ++++.++. ..++++...|..+ +... . |+|+++
T Consensus 200 ~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~--~~~~~a~~-----~~~v~~~~~D~~~---~~p~-~-D~v~~~ 266 (364)
T 3p9c_A 200 EGLGTLVDVGGGVGATVAAIAAHYPTIKGVNFDL-P--HVISEAPQ-----FPGVTHVGGDMFK---EVPS-G-DTILMK 266 (364)
T ss_dssp TTCSEEEEETCTTSHHHHHHHHHCTTCEEEEEEC-H--HHHTTCCC-----CTTEEEEECCTTT---CCCC-C-SEEEEE
T ss_pred cCCCEEEEeCCCCCHHHHHHHHHCCCCeEEEecC-H--HHHHhhhh-----cCCeEEEeCCcCC---CCCC-C-CEEEeh
Confidence 35679999999999999999886 448999999 3 57765553 2467788777654 2222 3 999999
Q ss_pred CCcCCC--ccHHHHHHHHHHHhhcCCCeEEEE
Q 026274 147 DVFYDA--SAFDDLFATITYLLQSSPGSVFIT 176 (241)
Q Consensus 147 dvly~~--~~~~~ll~~~~~lL~~~~~~~~~~ 176 (241)
.++++. +....+++.+.+.|+ |||.+++
T Consensus 267 ~vlh~~~d~~~~~~L~~~~~~L~--pgG~l~i 296 (364)
T 3p9c_A 267 WILHDWSDQHCATLLKNCYDALP--AHGKVVL 296 (364)
T ss_dssp SCGGGSCHHHHHHHHHHHHHHSC--TTCEEEE
T ss_pred HHhccCCHHHHHHHHHHHHHHcC--CCCEEEE
Confidence 999865 445689999999998 4554443
|
| >2ld4_A Anamorsin; methyltransferase-like fold, alpha/beta fold, iron-sulfur PR biogenesis, apoptosis; NMR {Homo sapiens} PDB: 2yui_A | Back alignment and structure |
|---|
Probab=98.87 E-value=5.2e-09 Score=82.74 Aligned_cols=110 Identities=15% Similarity=0.079 Sum_probs=80.2
Q ss_pred CCCCCeEEEecCCCCHHHHHHHHhCCEEEEEcCCCcHHHHHHHHHHHHHcCCceEEEEeecCCCCc-CcCCCCCcEEEEc
Q 026274 68 RFSGANVVELGAGTSLPGLVAAKVGSNVTLTDDSNRIEVLKNMRRVCEMNKLNCRVMGLTWGFLDA-SIFDLNPNIILGA 146 (241)
Q Consensus 68 ~~~~~~VLElGcGtGl~sl~la~~g~~V~~tD~~~~~~~l~~~~~n~~~n~~~~~~~~l~w~~~~~-~~~~~~fDlIl~~ 146 (241)
...|.+|||+|||+ +.+|+++ +|++.++++... ++++...+..+... +..+.+||+|+++
T Consensus 10 ~~~g~~vL~~~~g~--------------v~vD~s~--~ml~~a~~~~~~---~~~~~~~d~~~~~~~~~~~~~fD~V~~~ 70 (176)
T 2ld4_A 10 ISAGQFVAVVWDKS--------------SPVEALK--GLVDKLQALTGN---EGRVSVENIKQLLQSAHKESSFDIILSG 70 (176)
T ss_dssp CCTTSEEEEEECTT--------------SCHHHHH--HHHHHHHHHTTT---TSEEEEEEGGGGGGGCCCSSCEEEEEEC
T ss_pred CCCCCEEEEecCCc--------------eeeeCCH--HHHHHHHHhccc---CcEEEEechhcCccccCCCCCEeEEEEC
Confidence 34688999999997 2389884 799999887643 26777777765422 1135689999999
Q ss_pred CCcCCC-ccHHHHHHHHHHHhhcCCCeEEEEEeeccC---------chhHHHHHHHHcCCEEE
Q 026274 147 DVFYDA-SAFDDLFATITYLLQSSPGSVFITTYHNRS---------GHHLIEFLMVKWGLKCV 199 (241)
Q Consensus 147 dvly~~-~~~~~ll~~~~~lL~~~~~~~~~~~~~~r~---------~~~~~~~~~~~~g~~~~ 199 (241)
.++++. .+...+++.+.++|+ |||.+++.+.... ........+++.|| +.
T Consensus 71 ~~l~~~~~~~~~~l~~~~r~Lk--pgG~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~aGf-i~ 130 (176)
T 2ld4_A 71 LVPGSTTLHSAEILAEIARILR--PGGCLFLKEPVETAVDNNSKVKTASKLCSALTLSGL-VE 130 (176)
T ss_dssp CSTTCCCCCCHHHHHHHHHHEE--EEEEEEEEEEEESSSCSSSSSCCHHHHHHHHHHTTC-EE
T ss_pred ChhhhcccCHHHHHHHHHHHCC--CCEEEEEEcccccccccccccCCHHHHHHHHHHCCC-cE
Confidence 999998 889999999999999 6677666543211 12344556789999 55
|
| >1zg3_A Isoflavanone 4'-O-methyltransferase; rossman fold, plant Pro transferase; HET: 2HI SAH; 2.35A {Medicago truncatula} PDB: 1zga_A* 1zhf_A* 1zgj_A* | Back alignment and structure |
|---|
Probab=98.87 E-value=1e-08 Score=90.50 Aligned_cols=86 Identities=17% Similarity=0.141 Sum_probs=67.3
Q ss_pred CCCeEEEecCCCCHHHHHHHHhC--CEEEEEcCCCcHHHHHHHHHHHHHcCCceEEEEeecCCCCcCcCCCCCcEEEEcC
Q 026274 70 SGANVVELGAGTSLPGLVAAKVG--SNVTLTDDSNRIEVLKNMRRVCEMNKLNCRVMGLTWGFLDASIFDLNPNIILGAD 147 (241)
Q Consensus 70 ~~~~VLElGcGtGl~sl~la~~g--~~V~~tD~~~~~~~l~~~~~n~~~n~~~~~~~~l~w~~~~~~~~~~~fDlIl~~d 147 (241)
.+.+|||+|||+|..+..+++.. .+++++|++ .+++.+++ ..++++...|+.+ +. + +||+|+++.
T Consensus 193 ~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~~---~~~~~a~~-----~~~v~~~~~d~~~---~~-~-~~D~v~~~~ 259 (358)
T 1zg3_A 193 GLESLVDVGGGTGGVTKLIHEIFPHLKCTVFDQP---QVVGNLTG-----NENLNFVGGDMFK---SI-P-SADAVLLKW 259 (358)
T ss_dssp TCSEEEEETCTTSHHHHHHHHHCTTSEEEEEECH---HHHSSCCC-----CSSEEEEECCTTT---CC-C-CCSEEEEES
T ss_pred CCCEEEEECCCcCHHHHHHHHHCCCCeEEEeccH---HHHhhccc-----CCCcEEEeCccCC---CC-C-CceEEEEcc
Confidence 45799999999999999999874 489999994 47765543 1236777766654 22 2 599999999
Q ss_pred CcCCCccHH--HHHHHHHHHhhc
Q 026274 148 VFYDASAFD--DLFATITYLLQS 168 (241)
Q Consensus 148 vly~~~~~~--~ll~~~~~lL~~ 168 (241)
++++.++.. .+++.+.+.|++
T Consensus 260 vlh~~~d~~~~~~l~~~~~~L~p 282 (358)
T 1zg3_A 260 VLHDWNDEQSLKILKNSKEAISH 282 (358)
T ss_dssp CGGGSCHHHHHHHHHHHHHHTGG
T ss_pred cccCCCHHHHHHHHHHHHHhCCC
Confidence 999887766 999999999984
|
| >3fut_A Dimethyladenosine transferase; methyltransferase, dimethyltransferase, dual-specific methyltransferase, 16S rRNA methyltransferase; 1.52A {Thermus thermophilus} PDB: 3fuu_A* 3fuv_A 3fuw_A* 3fux_A* | Back alignment and structure |
|---|
Probab=98.81 E-value=1.1e-08 Score=87.40 Aligned_cols=99 Identities=13% Similarity=0.118 Sum_probs=68.0
Q ss_pred CcceEEeccHHHHHHHHHhccCCCCCCeEEEecCCCCHHHHHHHHhCCEEEEEcCCCcHHHHHHHHHHHHHcCCceEEEE
Q 026274 46 EYGLFVWPCSVILAEYVWQQRYRFSGANVVELGAGTSLPGLVAAKVGSNVTLTDDSNRIEVLKNMRRVCEMNKLNCRVMG 125 (241)
Q Consensus 46 ~~g~~~W~~s~~L~~~l~~~~~~~~~~~VLElGcGtGl~sl~la~~g~~V~~tD~~~~~~~l~~~~~n~~~n~~~~~~~~ 125 (241)
.+|...--...++ +.+.......++ +|||+|||+|.++..+++.+++|+++|+++ +|++.+++++. +.++++..
T Consensus 24 ~~GQnfL~d~~i~-~~Iv~~~~~~~~-~VLEIG~G~G~lt~~L~~~~~~V~avEid~--~~~~~l~~~~~--~~~v~vi~ 97 (271)
T 3fut_A 24 RFGQNFLVSEAHL-RRIVEAARPFTG-PVFEVGPGLGALTRALLEAGAEVTAIEKDL--RLRPVLEETLS--GLPVRLVF 97 (271)
T ss_dssp TSSCCEECCHHHH-HHHHHHHCCCCS-CEEEECCTTSHHHHHHHHTTCCEEEEESCG--GGHHHHHHHTT--TSSEEEEE
T ss_pred cCCccccCCHHHH-HHHHHhcCCCCC-eEEEEeCchHHHHHHHHHcCCEEEEEECCH--HHHHHHHHhcC--CCCEEEEE
Confidence 3454333333333 344443344567 999999999999999999999999999997 59999998876 34677777
Q ss_pred eecCCCCcCcCCCCCcEEEEcCCcCC
Q 026274 126 LTWGFLDASIFDLNPNIILGADVFYD 151 (241)
Q Consensus 126 l~w~~~~~~~~~~~fDlIl~~dvly~ 151 (241)
.|..+...+.. ..+|.|+++-+++-
T Consensus 98 ~D~l~~~~~~~-~~~~~iv~NlPy~i 122 (271)
T 3fut_A 98 QDALLYPWEEV-PQGSLLVANLPYHI 122 (271)
T ss_dssp SCGGGSCGGGS-CTTEEEEEEECSSC
T ss_pred CChhhCChhhc-cCccEEEecCcccc
Confidence 76655432211 25888887765543
|
| >2cmg_A Spermidine synthase; transferase, putrescine aminopropyltransferase, spermidine biosynthesis, polyamine biosynthesis, SPEE; 2.0A {Helicobacter pylori} PDB: 2cmh_A | Back alignment and structure |
|---|
Probab=98.79 E-value=4.4e-09 Score=89.36 Aligned_cols=96 Identities=10% Similarity=0.053 Sum_probs=69.5
Q ss_pred CCCeEEEecCCCCHHHHHHHHhCCEEEEEcCCCcHHHHHHHHHHHHH-----cCCceEEEEeecCCCCcCcCCCCCcEEE
Q 026274 70 SGANVVELGAGTSLPGLVAAKVGSNVTLTDDSNRIEVLKNMRRVCEM-----NKLNCRVMGLTWGFLDASIFDLNPNIIL 144 (241)
Q Consensus 70 ~~~~VLElGcGtGl~sl~la~~g~~V~~tD~~~~~~~l~~~~~n~~~-----n~~~~~~~~l~w~~~~~~~~~~~fDlIl 144 (241)
.+++|||||||+|.++..+++.+.+|+++|+++ ++++.++++... ...++++...|..+. . .+||+|+
T Consensus 72 ~~~~VL~iG~G~G~~~~~ll~~~~~v~~veid~--~~i~~ar~~~~~~~~~~~~~rv~~~~~D~~~~----~-~~fD~Ii 144 (262)
T 2cmg_A 72 ELKEVLIVDGFDLELAHQLFKYDTHIDFVQADE--KILDSFISFFPHFHEVKNNKNFTHAKQLLDLD----I-KKYDLIF 144 (262)
T ss_dssp CCCEEEEESSCCHHHHHHHTTSSCEEEEECSCH--HHHGGGTTTSTTHHHHHTCTTEEEESSGGGSC----C-CCEEEEE
T ss_pred CCCEEEEEeCCcCHHHHHHHhCCCEEEEEECCH--HHHHHHHHHHHhhccccCCCeEEEEechHHHH----H-hhCCEEE
Confidence 457999999999999988887767899999995 699988876532 233455554333322 1 5899999
Q ss_pred EcCCcCCCccHHHHHHHHHHHhhcCCCeEEEEEee
Q 026274 145 GADVFYDASAFDDLFATITYLLQSSPGSVFITTYH 179 (241)
Q Consensus 145 ~~dvly~~~~~~~ll~~~~~lL~~~~~~~~~~~~~ 179 (241)
+. ..+...+++.+.++|+ |||++++...
T Consensus 145 ~d-----~~dp~~~~~~~~~~L~--pgG~lv~~~~ 172 (262)
T 2cmg_A 145 CL-----QEPDIHRIDGLKRMLK--EDGVFISVAK 172 (262)
T ss_dssp ES-----SCCCHHHHHHHHTTEE--EEEEEEEEEE
T ss_pred EC-----CCChHHHHHHHHHhcC--CCcEEEEEcC
Confidence 75 2233458999999998 6777776543
|
| >1qam_A ERMC' methyltransferase; rRNA methyltransferase ERMC', cofactor analogs; 2.20A {Bacillus subtilis} SCOP: c.66.1.24 PDB: 1qan_A* 1qao_A* 1qaq_A* 2erc_A | Back alignment and structure |
|---|
Probab=98.77 E-value=4e-08 Score=82.39 Aligned_cols=73 Identities=14% Similarity=0.019 Sum_probs=56.9
Q ss_pred HHHHHHHHhccCCCCCCeEEEecCCCCHHHHHHHHhCCEEEEEcCCCcHHHHHHHHHHHHHcCCceEEEEeecCCC
Q 026274 56 VILAEYVWQQRYRFSGANVVELGAGTSLPGLVAAKVGSNVTLTDDSNRIEVLKNMRRVCEMNKLNCRVMGLTWGFL 131 (241)
Q Consensus 56 ~~L~~~l~~~~~~~~~~~VLElGcGtGl~sl~la~~g~~V~~tD~~~~~~~l~~~~~n~~~n~~~~~~~~l~w~~~ 131 (241)
..+.+.+........+.+|||+|||+|.++..+++.+.+|+++|+++ ++++.+++++... .++++...|+.+.
T Consensus 16 ~~~~~~i~~~~~~~~~~~VLDiG~G~G~lt~~l~~~~~~v~~vD~~~--~~~~~a~~~~~~~-~~v~~~~~D~~~~ 88 (244)
T 1qam_A 16 KHNIDKIMTNIRLNEHDNIFEIGSGKGHFTLELVQRCNFVTAIEIDH--KLCKTTENKLVDH-DNFQVLNKDILQF 88 (244)
T ss_dssp HHHHHHHHTTCCCCTTCEEEEECCTTSHHHHHHHHHSSEEEEECSCH--HHHHHHHHHTTTC-CSEEEECCCGGGC
T ss_pred HHHHHHHHHhCCCCCCCEEEEEeCCchHHHHHHHHcCCeEEEEECCH--HHHHHHHHhhccC-CCeEEEEChHHhC
Confidence 34455565555555788999999999999999999999999999995 6999999887642 3567776666543
|
| >3ftd_A Dimethyladenosine transferase; KSGA, rossmann-like fold, RNA methyltransferase, mtase, anti resistance, methyltransferase, RNA-binding; 1.44A {Aquifex aeolicus} PDB: 3ftc_A 3fte_A 3ftf_A* 3r9x_B* | Back alignment and structure |
|---|
Probab=98.77 E-value=1.2e-07 Score=79.93 Aligned_cols=87 Identities=14% Similarity=0.161 Sum_probs=59.5
Q ss_pred HHHHHhccCCCCCCeEEEecCCCCHHHHHHHHhC-CEEEEEcCCCcHHHHHHHHHHHHHcCCceEEEEeecCCCCcCcCC
Q 026274 59 AEYVWQQRYRFSGANVVELGAGTSLPGLVAAKVG-SNVTLTDDSNRIEVLKNMRRVCEMNKLNCRVMGLTWGFLDASIFD 137 (241)
Q Consensus 59 ~~~l~~~~~~~~~~~VLElGcGtGl~sl~la~~g-~~V~~tD~~~~~~~l~~~~~n~~~n~~~~~~~~l~w~~~~~~~~~ 137 (241)
.+.+.......++.+|||+|||+|.++..+++.| ++|+++|+++ .+++.++++ ...++++...|..+...+...
T Consensus 20 ~~~iv~~~~~~~~~~VLDiG~G~G~lt~~L~~~~~~~v~avEid~--~~~~~~~~~---~~~~v~~i~~D~~~~~~~~~~ 94 (249)
T 3ftd_A 20 LKKIAEELNIEEGNTVVEVGGGTGNLTKVLLQHPLKKLYVIELDR--EMVENLKSI---GDERLEVINEDASKFPFCSLG 94 (249)
T ss_dssp HHHHHHHTTCCTTCEEEEEESCHHHHHHHHTTSCCSEEEEECCCH--HHHHHHTTS---CCTTEEEECSCTTTCCGGGSC
T ss_pred HHHHHHhcCCCCcCEEEEEcCchHHHHHHHHHcCCCeEEEEECCH--HHHHHHHhc---cCCCeEEEEcchhhCChhHcc
Confidence 3444444445577899999999999999999996 6999999995 699998887 344566666665543222111
Q ss_pred CCCcEEEEcCCcCCC
Q 026274 138 LNPNIILGADVFYDA 152 (241)
Q Consensus 138 ~~fDlIl~~dvly~~ 152 (241)
. ++++.++.-|+.
T Consensus 95 ~--~~~vv~NlPy~i 107 (249)
T 3ftd_A 95 K--ELKVVGNLPYNV 107 (249)
T ss_dssp S--SEEEEEECCTTT
T ss_pred C--CcEEEEECchhc
Confidence 1 334445555654
|
| >3v97_A Ribosomal RNA large subunit methyltransferase L; YCBY, RNA methyltransferase, ribosome RNA, SAH, RLML; HET: SAH OSU; 2.20A {Escherichia coli} PDB: 3v8v_A* | Back alignment and structure |
|---|
Probab=98.76 E-value=9.9e-08 Score=91.55 Aligned_cols=120 Identities=12% Similarity=0.080 Sum_probs=86.2
Q ss_pred HHHHHHHHhccCCCCCCeEEEecCCCCHHHHHHHHhC-------------------------------------------
Q 026274 56 VILAEYVWQQRYRFSGANVVELGAGTSLPGLVAAKVG------------------------------------------- 92 (241)
Q Consensus 56 ~~L~~~l~~~~~~~~~~~VLElGcGtGl~sl~la~~g------------------------------------------- 92 (241)
..|+..+........+..+||.+||+|.+.+.+|..+
T Consensus 176 e~LAa~ll~~~~~~~~~~llDP~CGSGt~lIeAa~~a~~~apG~~R~~f~fe~w~~~~~~~w~~~~~ea~~~~~~~~~~~ 255 (703)
T 3v97_A 176 ETLAAAIVMRSGWQPGTPLLDPMCGSGTLLIEAAMLATDRAPGLHRGRWGFSGWAQHDEAIWQEVKAEAQTRARKGLAEY 255 (703)
T ss_dssp HHHHHHHHHHTTCCTTSCEEETTCTTSHHHHHHHHHHTTCCTTTTCCCCTTTTBTTCCHHHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHhhCCCCCCeEEecCCCCcHHHHHHHHHHhhcCCCCCccccchhhcccCCHHHHHHHHHHHHHHhhhccccC
Confidence 4566666554444467789999999999999988753
Q ss_pred -CEEEEEcCCCcHHHHHHHHHHHHHcCCc--eEEEEeecCCCCcCcCCCCCcEEEEcCCcCC----CccHHHHHHHHHHH
Q 026274 93 -SNVTLTDDSNRIEVLKNMRRVCEMNKLN--CRVMGLTWGFLDASIFDLNPNIILGADVFYD----ASAFDDLFATITYL 165 (241)
Q Consensus 93 -~~V~~tD~~~~~~~l~~~~~n~~~n~~~--~~~~~l~w~~~~~~~~~~~fDlIl~~dvly~----~~~~~~ll~~~~~l 165 (241)
.+|+++|+++ .|++.++.|+..+++. +.+...|..+...+...++||+|++++++-. ...+..+.+.+.+.
T Consensus 256 ~~~i~G~Did~--~av~~A~~N~~~agv~~~i~~~~~D~~~~~~~~~~~~~d~Iv~NPPYG~Rlg~~~~l~~ly~~l~~~ 333 (703)
T 3v97_A 256 SSHFYGSDSDA--RVIQRARTNARLAGIGELITFEVKDVAQLTNPLPKGPYGTVLSNPPYGERLDSEPALIALHSLLGRI 333 (703)
T ss_dssp CCCEEEEESCH--HHHHHHHHHHHHTTCGGGEEEEECCGGGCCCSCTTCCCCEEEECCCCCC---CCHHHHHHHHHHHHH
T ss_pred CccEEEEECCH--HHHHHHHHHHHHcCCCCceEEEECChhhCccccccCCCCEEEeCCCccccccchhHHHHHHHHHHHH
Confidence 4799999995 7999999999999985 6788877766433322337999999888643 23566777777766
Q ss_pred hhc--CCCeEEEEE
Q 026274 166 LQS--SPGSVFITT 177 (241)
Q Consensus 166 L~~--~~~~~~~~~ 177 (241)
++. .++.+++++
T Consensus 334 lk~~~~g~~~~ilt 347 (703)
T 3v97_A 334 MKNQFGGWNLSLFS 347 (703)
T ss_dssp HHHHCTTCEEEEEE
T ss_pred HHhhCCCCeEEEEe
Confidence 663 233344443
|
| >3sso_A Methyltransferase; macrolide, natural product, rossman fold; HET: SAH; 1.90A {Micromonospora griseorubida} PDB: 3ssn_A* 3ssm_A* | Back alignment and structure |
|---|
Probab=98.73 E-value=9.1e-09 Score=92.13 Aligned_cols=93 Identities=15% Similarity=0.142 Sum_probs=69.2
Q ss_pred CCCeEEEecCC------CCHHHHHHHHh---CCEEEEEcCCCcHHHHHHHHHHHHHcCCceEEEEeecCCCCcCcC----
Q 026274 70 SGANVVELGAG------TSLPGLVAAKV---GSNVTLTDDSNRIEVLKNMRRVCEMNKLNCRVMGLTWGFLDASIF---- 136 (241)
Q Consensus 70 ~~~~VLElGcG------tGl~sl~la~~---g~~V~~tD~~~~~~~l~~~~~n~~~n~~~~~~~~l~w~~~~~~~~---- 136 (241)
++.+||||||| ||..++.+++. +++|+++|+++. |. ....++++...|..+.. ..
T Consensus 216 ~~~rVLDIGCG~~~~~~TGG~Sl~la~~~fP~a~V~GVDiSp~--m~--------~~~~rI~fv~GDa~dlp--f~~~l~ 283 (419)
T 3sso_A 216 QQVRVLEIGVGGYKHPEWGGGSLRMWKSFFPRGQIYGLDIMDK--SH--------VDELRIRTIQGDQNDAE--FLDRIA 283 (419)
T ss_dssp SCCEEEEECCSCTTCSSCCCHHHHHHHHHCTTCEEEEEESSCC--GG--------GCBTTEEEEECCTTCHH--HHHHHH
T ss_pred CCCEEEEEecCCCcCCCCCHHHHHHHHHhCCCCEEEEEECCHH--Hh--------hcCCCcEEEEecccccc--hhhhhh
Confidence 56799999999 77777777764 569999999984 42 23456777777765431 11
Q ss_pred --CCCCcEEEEcCCcCCCccHHHHHHHHHHHhhcCCCeEEEEE
Q 026274 137 --DLNPNIILGADVFYDASAFDDLFATITYLLQSSPGSVFITT 177 (241)
Q Consensus 137 --~~~fDlIl~~dvly~~~~~~~ll~~~~~lL~~~~~~~~~~~ 177 (241)
+++||+|++. ..++..+....++.+.++|+ |||++++.
T Consensus 284 ~~d~sFDlVisd-gsH~~~d~~~aL~el~rvLK--PGGvlVi~ 323 (419)
T 3sso_A 284 RRYGPFDIVIDD-GSHINAHVRTSFAALFPHVR--PGGLYVIE 323 (419)
T ss_dssp HHHCCEEEEEEC-SCCCHHHHHHHHHHHGGGEE--EEEEEEEE
T ss_pred cccCCccEEEEC-CcccchhHHHHHHHHHHhcC--CCeEEEEE
Confidence 3689999975 55666778889999999998 67877775
|
| >2b9e_A NOL1/NOP2/SUN domain family, member 5 isoform 2; methytransferase, structural genomics, structural genomics consortium, SGC; HET: SAM; 1.65A {Homo sapiens} SCOP: c.66.1.38 | Back alignment and structure |
|---|
Probab=98.73 E-value=1.3e-07 Score=82.10 Aligned_cols=87 Identities=15% Similarity=0.048 Sum_probs=64.7
Q ss_pred ccHHHHHHHHHhccCCCCCCeEEEecCCCCHHHHHHHHh-C--CEEEEEcCCCcHHHHHHHHHHHHHcCC-ceEEEEeec
Q 026274 53 PCSVILAEYVWQQRYRFSGANVVELGAGTSLPGLVAAKV-G--SNVTLTDDSNRIEVLKNMRRVCEMNKL-NCRVMGLTW 128 (241)
Q Consensus 53 ~~s~~L~~~l~~~~~~~~~~~VLElGcGtGl~sl~la~~-g--~~V~~tD~~~~~~~l~~~~~n~~~n~~-~~~~~~l~w 128 (241)
.++.+++.++. ...|.+|||+|||+|..++.+|+. + .+|+++|+++ .+++.+++|++.+++ ++.+...|+
T Consensus 89 ~~s~l~~~~l~----~~~g~~VLDlcaG~G~kt~~la~~~~~~g~V~a~D~~~--~~l~~~~~n~~r~g~~~v~~~~~D~ 162 (309)
T 2b9e_A 89 RASCLPAMLLD----PPPGSHVIDACAAPGNKTSHLAALLKNQGKIFAFDLDA--KRLASMATLLARAGVSCCELAEEDF 162 (309)
T ss_dssp TGGGHHHHHHC----CCTTCEEEESSCTTCHHHHHHHHHHTTCSEEEEEESCH--HHHHHHHHHHHHTTCCSEEEEECCG
T ss_pred HHHHHHHHHhC----CCCCCEEEEeCCChhHHHHHHHHHhCCCCEEEEEeCCH--HHHHHHHHHHHHcCCCeEEEEeCCh
Confidence 44555555552 346789999999999999999885 2 5899999995 699999999999886 577777776
Q ss_pred CCCCcCcC-CCCCcEEEE
Q 026274 129 GFLDASIF-DLNPNIILG 145 (241)
Q Consensus 129 ~~~~~~~~-~~~fDlIl~ 145 (241)
.+...... ..+||.|++
T Consensus 163 ~~~~~~~~~~~~fD~Vl~ 180 (309)
T 2b9e_A 163 LAVSPSDPRYHEVHYILL 180 (309)
T ss_dssp GGSCTTCGGGTTEEEEEE
T ss_pred HhcCccccccCCCCEEEE
Confidence 55432111 147999986
|
| >2xyq_A Putative 2'-O-methyl transferase; transferase-viral protein complex, rossman fold; HET: SAH; 2.00A {Sars coronavirus} PDB: 2xyv_A* 2xyr_A* | Back alignment and structure |
|---|
Probab=98.71 E-value=3.4e-07 Score=78.84 Aligned_cols=124 Identities=14% Similarity=0.054 Sum_probs=78.1
Q ss_pred HHHHHH-hccCCCCCCeEEEecCCC------CHHHHHHHH-hC--CEEEEEcCCCcHHHHHHHHHHHHHcCCceEE-EEe
Q 026274 58 LAEYVW-QQRYRFSGANVVELGAGT------SLPGLVAAK-VG--SNVTLTDDSNRIEVLKNMRRVCEMNKLNCRV-MGL 126 (241)
Q Consensus 58 L~~~l~-~~~~~~~~~~VLElGcGt------Gl~sl~la~-~g--~~V~~tD~~~~~~~l~~~~~n~~~n~~~~~~-~~l 126 (241)
+.+|+. ......++.+|||||||+ |. ..+++ .+ ++|+++|+++. + . ++++ .+.
T Consensus 50 l~~~l~~~~l~l~~g~~VLDLGcGsg~~~GpGs--~~~a~~~~~~~~V~gvDis~~---v---------~--~v~~~i~g 113 (290)
T 2xyq_A 50 LCQYLNTLTLAVPYNMRVIHFGAGSDKGVAPGT--AVLRQWLPTGTLLVDSDLNDF---V---------S--DADSTLIG 113 (290)
T ss_dssp HHHHHTTSCCCCCTTCEEEEESCCCTTSBCHHH--HHHHHHSCTTCEEEEEESSCC---B---------C--SSSEEEES
T ss_pred HHHHHHHhhcCCCCCCEEEEeCCCCCCCCCcHH--HHHHHHcCCCCEEEEEECCCC---C---------C--CCEEEEEC
Confidence 556663 223445678999999955 55 33444 34 69999999972 1 2 3556 777
Q ss_pred ecCCCCcCcCCCCCcEEEEcCCcCC-----------CccHHHHHHHHHHHhhcCCCeEEEEEeeccCchhHHHHHHHHcC
Q 026274 127 TWGFLDASIFDLNPNIILGADVFYD-----------ASAFDDLFATITYLLQSSPGSVFITTYHNRSGHHLIEFLMVKWG 195 (241)
Q Consensus 127 ~w~~~~~~~~~~~fDlIl~~dvly~-----------~~~~~~ll~~~~~lL~~~~~~~~~~~~~~r~~~~~~~~~~~~~g 195 (241)
|+.+.. ...+||+|+++-.... ....+.+++.+.++|+ |||.|++..........+..+++++|
T Consensus 114 D~~~~~---~~~~fD~Vvsn~~~~~~g~~~~d~~~~~~l~~~~l~~a~r~Lk--pGG~~v~~~~~~~~~~~l~~~l~~~G 188 (290)
T 2xyq_A 114 DCATVH---TANKWDLIISDMYDPRTKHVTKENDSKEGFFTYLCGFIKQKLA--LGGSIAVKITEHSWNADLYKLMGHFS 188 (290)
T ss_dssp CGGGCC---CSSCEEEEEECCCCCC---CCSCCCCCCTHHHHHHHHHHHHEE--EEEEEEEEECSSSCCHHHHHHHTTEE
T ss_pred ccccCC---ccCcccEEEEcCCccccccccccccchHHHHHHHHHHHHHhcC--CCcEEEEEEeccCCHHHHHHHHHHcC
Confidence 776532 2358999997532111 1235688999999999 67777765433223334556677888
Q ss_pred CEEEEEe
Q 026274 196 LKCVKLV 202 (241)
Q Consensus 196 ~~~~~i~ 202 (241)
|....+.
T Consensus 189 F~~v~~~ 195 (290)
T 2xyq_A 189 WWTAFVT 195 (290)
T ss_dssp EEEEEEE
T ss_pred CcEEEEE
Confidence 8765553
|
| >3giw_A Protein of unknown function DUF574; rossmann-fold protein, structural genomics, joint center for structural genomics, JCSG; HET: MSE UNL; 1.45A {Streptomyces avermitilis} PDB: 3go4_A* | Back alignment and structure |
|---|
Probab=98.68 E-value=1.5e-07 Score=80.33 Aligned_cols=107 Identities=11% Similarity=0.019 Sum_probs=75.8
Q ss_pred CeEEEecCCC---CHHHHHHHHh--CCEEEEEcCCCcHHHHHHHHHHHHHcC-CceEEEEeecCCCCc----CcCCCCCc
Q 026274 72 ANVVELGAGT---SLPGLVAAKV--GSNVTLTDDSNRIEVLKNMRRVCEMNK-LNCRVMGLTWGFLDA----SIFDLNPN 141 (241)
Q Consensus 72 ~~VLElGcGt---Gl~sl~la~~--g~~V~~tD~~~~~~~l~~~~~n~~~n~-~~~~~~~l~w~~~~~----~~~~~~fD 141 (241)
.+|||||||+ |.+...+.+. +++|+++|.|+ .||..++.++..+. .++++...|..+... +.....||
T Consensus 80 ~q~LDLGcG~pT~~~~~~la~~~~P~arVv~VD~sp--~mLa~Ar~~l~~~~~~~~~~v~aD~~~~~~~l~~~~~~~~~D 157 (277)
T 3giw_A 80 RQFLDIGTGIPTSPNLHEIAQSVAPESRVVYVDNDP--IVLTLSQGLLASTPEGRTAYVEADMLDPASILDAPELRDTLD 157 (277)
T ss_dssp CEEEEESCCSCCSSCHHHHHHHHCTTCEEEEEECCH--HHHHTTHHHHCCCSSSEEEEEECCTTCHHHHHTCHHHHTTCC
T ss_pred CEEEEeCCCCCcccHHHHHHHHHCCCCEEEEEeCCh--HHHHHHHHHhccCCCCcEEEEEecccChhhhhcccccccccC
Confidence 5899999997 4454444443 57999999995 79999998876543 357778777765421 10012333
Q ss_pred -----EEEEcCCcCCCcc---HHHHHHHHHHHhhcCCCeEEEEEeeccC
Q 026274 142 -----IILGADVFYDASA---FDDLFATITYLLQSSPGSVFITTYHNRS 182 (241)
Q Consensus 142 -----lIl~~dvly~~~~---~~~ll~~~~~lL~~~~~~~~~~~~~~r~ 182 (241)
.|+++-++++.++ ...+++.+.+.|+ ||+.+++++....
T Consensus 158 ~~~p~av~~~avLH~l~d~~~p~~~l~~l~~~L~--PGG~Lvls~~~~d 204 (277)
T 3giw_A 158 LTRPVALTVIAIVHFVLDEDDAVGIVRRLLEPLP--SGSYLAMSIGTAE 204 (277)
T ss_dssp TTSCCEEEEESCGGGSCGGGCHHHHHHHHHTTSC--TTCEEEEEEECCT
T ss_pred cCCcchHHhhhhHhcCCchhhHHHHHHHHHHhCC--CCcEEEEEeccCC
Confidence 6888999999777 4689999999998 7788887765543
|
| >3uzu_A Ribosomal RNA small subunit methyltransferase A; ssgcid, seattle structural genomics center for infectio disease; 1.75A {Burkholderia pseudomallei} | Back alignment and structure |
|---|
Probab=98.66 E-value=4.9e-08 Score=83.66 Aligned_cols=87 Identities=9% Similarity=-0.026 Sum_probs=60.3
Q ss_pred HHHHHhccCCCCCCeEEEecCCCCHHHHHHHHhCCE----EEEEcCCCcHHHHHHHHHHHHHcCCceEEEEeecCCCCcC
Q 026274 59 AEYVWQQRYRFSGANVVELGAGTSLPGLVAAKVGSN----VTLTDDSNRIEVLKNMRRVCEMNKLNCRVMGLTWGFLDAS 134 (241)
Q Consensus 59 ~~~l~~~~~~~~~~~VLElGcGtGl~sl~la~~g~~----V~~tD~~~~~~~l~~~~~n~~~n~~~~~~~~l~w~~~~~~ 134 (241)
.+.+........+.+|||||||+|.++..+++.+.+ |+++|+++ +|++.++++. ..++++...|..+...+
T Consensus 31 ~~~iv~~~~~~~~~~VLEIG~G~G~lt~~La~~~~~~~~~V~avDid~--~~l~~a~~~~---~~~v~~i~~D~~~~~~~ 105 (279)
T 3uzu_A 31 IDAIVAAIRPERGERMVEIGPGLGALTGPVIARLATPGSPLHAVELDR--DLIGRLEQRF---GELLELHAGDALTFDFG 105 (279)
T ss_dssp HHHHHHHHCCCTTCEEEEECCTTSTTHHHHHHHHCBTTBCEEEEECCH--HHHHHHHHHH---GGGEEEEESCGGGCCGG
T ss_pred HHHHHHhcCCCCcCEEEEEccccHHHHHHHHHhCCCcCCeEEEEECCH--HHHHHHHHhc---CCCcEEEECChhcCChh
Confidence 344444444456789999999999999999998877 99999995 7999999884 34577777776554322
Q ss_pred c-CC-C--CCcEEEEcCCcC
Q 026274 135 I-FD-L--NPNIILGADVFY 150 (241)
Q Consensus 135 ~-~~-~--~fDlIl~~dvly 150 (241)
. .+ . ....|+++-++|
T Consensus 106 ~~~~~~~~~~~~vv~NlPY~ 125 (279)
T 3uzu_A 106 SIARPGDEPSLRIIGNLPYN 125 (279)
T ss_dssp GGSCSSSSCCEEEEEECCHH
T ss_pred HhcccccCCceEEEEccCcc
Confidence 1 11 1 244666654433
|
| >2p41_A Type II methyltransferase; vizier, viral enzymes involved in replication, dengue virus methyltransferase, structural genomics; HET: G1G SAH CIT; 1.80A {Dengue virus 2} SCOP: c.66.1.25 PDB: 2p1d_A* 1l9k_A* 2p3o_A* 2p3q_A* 2p40_A* 2p3l_A* 1r6a_A* | Back alignment and structure |
|---|
Probab=98.65 E-value=5.5e-08 Score=84.37 Aligned_cols=117 Identities=15% Similarity=0.011 Sum_probs=70.5
Q ss_pred EeccHHHHHHHHHhccCCCCCCeEEEecCCCCHHHHHHHHhCCEEEEEcC----CCcHHHHHHHHHHHHHcC-CceEEEE
Q 026274 51 VWPCSVILAEYVWQQRYRFSGANVVELGAGTSLPGLVAAKVGSNVTLTDD----SNRIEVLKNMRRVCEMNK-LNCRVMG 125 (241)
Q Consensus 51 ~W~~s~~L~~~l~~~~~~~~~~~VLElGcGtGl~sl~la~~g~~V~~tD~----~~~~~~l~~~~~n~~~n~-~~~~~~~ 125 (241)
+=.+++.|...+.. ....++.+|||||||+|.++..+++. .+|+++|+ ++. +++.+. .+..+ ..+.+..
T Consensus 64 ~sR~a~KL~~i~~~-~~~~~g~~VLDlGcG~G~~s~~la~~-~~V~gvD~~~~~~~~--~~~~~~--~~~~~~~~v~~~~ 137 (305)
T 2p41_A 64 VSRGSAKLRWFVER-NLVTPEGKVVDLGCGRGGWSYYCGGL-KNVREVKGLTKGGPG--HEEPIP--MSTYGWNLVRLQS 137 (305)
T ss_dssp SSTHHHHHHHHHHT-TSSCCCEEEEEETCTTSHHHHHHHTS-TTEEEEEEECCCSTT--SCCCCC--CCSTTGGGEEEEC
T ss_pred cccHHHHHHHHHHc-CCCCCCCEEEEEcCCCCHHHHHHHhc-CCEEEEeccccCchh--HHHHHH--hhhcCCCCeEEEe
Confidence 33467777776655 33445789999999999999999998 58999999 431 222111 01011 1344544
Q ss_pred e-ecCCCCcCcCCCCCcEEEEcCCcC---CCccHH---HHHHHHHHHhhcCCCeEEEEEee
Q 026274 126 L-TWGFLDASIFDLNPNIILGADVFY---DASAFD---DLFATITYLLQSSPGSVFITTYH 179 (241)
Q Consensus 126 l-~w~~~~~~~~~~~fDlIl~~dvly---~~~~~~---~ll~~~~~lL~~~~~~~~~~~~~ 179 (241)
. |... ....+||+|++.-... +..+.. .+++.+.++|+ |||.|++...
T Consensus 138 ~~D~~~----l~~~~fD~V~sd~~~~~g~~~~d~~~~l~~L~~~~~~Lk--pGG~~v~kv~ 192 (305)
T 2p41_A 138 GVDVFF----IPPERCDTLLCDIGESSPNPTVEAGRTLRVLNLVENWLS--NNTQFCVKVL 192 (305)
T ss_dssp SCCTTT----SCCCCCSEEEECCCCCCSSHHHHHHHHHHHHHHHHHHCC--TTCEEEEEES
T ss_pred cccccc----CCcCCCCEEEECCccccCcchhhHHHHHHHHHHHHHHhC--CCCEEEEEeC
Confidence 3 3322 2245899999843321 111111 46788889998 5666666543
|
| >1m6y_A S-adenosyl-methyltransferase MRAW; SAM-dependent methyltransferase fold, protein-cofactor product complex, structural genomics, PSI; HET: SAH; 1.90A {Thermotoga maritima} SCOP: a.60.13.1 c.66.1.23 PDB: 1n2x_A* | Back alignment and structure |
|---|
Probab=98.65 E-value=2.7e-08 Score=86.16 Aligned_cols=78 Identities=12% Similarity=-0.026 Sum_probs=61.0
Q ss_pred CCCCCeEEEecCCCCHHHHHHHHh--CCEEEEEcCCCcHHHHHHHHHHHHHcCCceEEEEeecCCCCcCc---CCCCCcE
Q 026274 68 RFSGANVVELGAGTSLPGLVAAKV--GSNVTLTDDSNRIEVLKNMRRVCEMNKLNCRVMGLTWGFLDASI---FDLNPNI 142 (241)
Q Consensus 68 ~~~~~~VLElGcGtGl~sl~la~~--g~~V~~tD~~~~~~~l~~~~~n~~~n~~~~~~~~l~w~~~~~~~---~~~~fDl 142 (241)
...+.+|||+|||+|..++.+++. +.+|+++|+++ +|++.+++|+..++.++++...++.+..... ...+||.
T Consensus 24 ~~~g~~vLD~g~G~G~~s~~la~~~~~~~VigvD~d~--~al~~A~~~~~~~g~~v~~v~~d~~~l~~~l~~~g~~~~D~ 101 (301)
T 1m6y_A 24 PEDEKIILDCTVGEGGHSRAILEHCPGCRIIGIDVDS--EVLRIAEEKLKEFSDRVSLFKVSYREADFLLKTLGIEKVDG 101 (301)
T ss_dssp CCTTCEEEETTCTTSHHHHHHHHHCTTCEEEEEESCH--HHHHHHHHHTGGGTTTEEEEECCGGGHHHHHHHTTCSCEEE
T ss_pred CCCCCEEEEEeCCcCHHHHHHHHHCCCCEEEEEECCH--HHHHHHHHHHHhcCCcEEEEECCHHHHHHHHHhcCCCCCCE
Confidence 346789999999999999999987 46999999995 7999999999887767888887776532111 1147999
Q ss_pred EEEcC
Q 026274 143 ILGAD 147 (241)
Q Consensus 143 Il~~d 147 (241)
|++.-
T Consensus 102 Vl~D~ 106 (301)
T 1m6y_A 102 ILMDL 106 (301)
T ss_dssp EEEEC
T ss_pred EEEcC
Confidence 98643
|
| >2oyr_A UPF0341 protein YHIQ; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; HET: SAH; 2.00A {Shigella flexneri 2A} SCOP: c.66.1.55 PDB: 2pgx_A 2pkw_A | Back alignment and structure |
|---|
Probab=98.64 E-value=6e-08 Score=82.19 Aligned_cols=92 Identities=16% Similarity=0.170 Sum_probs=58.8
Q ss_pred CeEEEecCCCCHHHHHHHHhCCEEEEEcCCCcHHHHHHHHHHHH-------HcC-C--ceEEEEeecCCCCcCcCCCCCc
Q 026274 72 ANVVELGAGTSLPGLVAAKVGSNVTLTDDSNRIEVLKNMRRVCE-------MNK-L--NCRVMGLTWGFLDASIFDLNPN 141 (241)
Q Consensus 72 ~~VLElGcGtGl~sl~la~~g~~V~~tD~~~~~~~l~~~~~n~~-------~n~-~--~~~~~~l~w~~~~~~~~~~~fD 141 (241)
.+|||+|||+|..++.+|+.|++|+++|.++ .+...+++|++ .|+ + ++++...|..+..... ..+||
T Consensus 90 ~~VLDl~~G~G~dal~lA~~g~~V~~vE~~~--~~~~l~~~~l~~a~~~~~~~~~l~~~i~~~~~D~~~~L~~~-~~~fD 166 (258)
T 2oyr_A 90 PDVVDATAGLGRDAFVLASVGCRVRMLERNP--VVAALLDDGLARGYADAEIGGWLQERLQLIHASSLTALTDI-TPRPQ 166 (258)
T ss_dssp CCEEETTCTTCHHHHHHHHHTCCEEEEECCH--HHHHHHHHHHHHHHHCTTTHHHHHHHEEEEESCHHHHSTTC-SSCCS
T ss_pred CEEEEcCCcCCHHHHHHHHcCCEEEEEECCH--HHHHHHHHHHHHHHhhHhhhhhhhcCEEEEECCHHHHHHhC-cccCC
Confidence 7999999999999999999999999999995 56666655543 333 2 4666666554432222 23799
Q ss_pred EEEEcCCcCCCccHHHHHHHHHHHhh
Q 026274 142 IILGADVFYDASAFDDLFATITYLLQ 167 (241)
Q Consensus 142 lIl~~dvly~~~~~~~ll~~~~~lL~ 167 (241)
+|+.. +.|....-.++++...++++
T Consensus 167 vV~lD-P~y~~~~~saavkk~~~~lr 191 (258)
T 2oyr_A 167 VVYLD-PMFPHKQKSALVKKEMRVFQ 191 (258)
T ss_dssp EEEEC-CCCCCCCC-----HHHHHHH
T ss_pred EEEEc-CCCCCcccchHHHHHHHHHH
Confidence 99865 44443333344444444444
|
| >1yub_A Ermam, rRNA methyltransferase; MLS antibiotics; NMR {Streptococcus pneumoniae} SCOP: c.66.1.24 | Back alignment and structure |
|---|
Probab=98.53 E-value=1e-08 Score=85.81 Aligned_cols=86 Identities=13% Similarity=0.044 Sum_probs=58.9
Q ss_pred HHHHhccCCCCCCeEEEecCCCCHHHHHHHHhCCEEEEEcCCCcHHHHHHHHHHHHHcCCceEEEEeecCCCCcCcCCCC
Q 026274 60 EYVWQQRYRFSGANVVELGAGTSLPGLVAAKVGSNVTLTDDSNRIEVLKNMRRVCEMNKLNCRVMGLTWGFLDASIFDLN 139 (241)
Q Consensus 60 ~~l~~~~~~~~~~~VLElGcGtGl~sl~la~~g~~V~~tD~~~~~~~l~~~~~n~~~n~~~~~~~~l~w~~~~~~~~~~~ 139 (241)
+.+.......++.+|||+|||+|.++..+++.+.+|+++|+++ ++++.+++++. ...++++...|+.+...+ .+.+
T Consensus 19 ~~i~~~~~~~~~~~VLDiG~G~G~~~~~l~~~~~~v~~id~~~--~~~~~a~~~~~-~~~~v~~~~~D~~~~~~~-~~~~ 94 (245)
T 1yub_A 19 NQIIKQLNLKETDTVYEIGTGKGHLTTKLAKISKQVTSIELDS--HLFNLSSEKLK-LNTRVTLIHQDILQFQFP-NKQR 94 (245)
T ss_dssp HHHHHHCCCCSSEEEEECSCCCSSCSHHHHHHSSEEEESSSSC--SSSSSSSCTTT-TCSEEEECCSCCTTTTCC-CSSE
T ss_pred HHHHHhcCCCCCCEEEEEeCCCCHHHHHHHHhCCeEEEEECCH--HHHHHHHHHhc-cCCceEEEECChhhcCcc-cCCC
Confidence 4444433445677999999999999999999999999999997 48888877765 233566666665543211 0246
Q ss_pred CcEEEEcCCcC
Q 026274 140 PNIILGADVFY 150 (241)
Q Consensus 140 fDlIl~~dvly 150 (241)
| .|+++.+.+
T Consensus 95 f-~vv~n~Py~ 104 (245)
T 1yub_A 95 Y-KIVGNIPYH 104 (245)
T ss_dssp E-EEEEECCSS
T ss_pred c-EEEEeCCcc
Confidence 7 666655544
|
| >2ar0_A M.ecoki, type I restriction enzyme ecoki M protein; structural genomics, protein structure initiative, nysgxrc; 2.80A {Escherichia coli} SCOP: c.66.1.45 PDB: 2y7c_B 2y7h_B* | Back alignment and structure |
|---|
Probab=98.51 E-value=1.1e-06 Score=81.86 Aligned_cols=137 Identities=13% Similarity=-0.031 Sum_probs=85.5
Q ss_pred HHHHHHhccCCCCCCeEEEecCCCCHHHHHHHHh--------------------CCEEEEEcCCCcHHHHHHHHHHHHHc
Q 026274 58 LAEYVWQQRYRFSGANVVELGAGTSLPGLVAAKV--------------------GSNVTLTDDSNRIEVLKNMRRVCEMN 117 (241)
Q Consensus 58 L~~~l~~~~~~~~~~~VLElGcGtGl~sl~la~~--------------------g~~V~~tD~~~~~~~l~~~~~n~~~n 117 (241)
+++++........+.+|||.+||||.+.+.+++. ..+++|.|+++ .++..++.|+..+
T Consensus 157 iv~~mv~~l~p~~~~~VlDPaCGSG~fLi~a~~~l~~~~~~~~~~~~~~~~~~~~~~i~GiEid~--~~~~lA~~nl~l~ 234 (541)
T 2ar0_A 157 LIKTIIHLLKPQPREVVQDPAAGTAGFLIEADRYVKSQTNDLDDLDGDTQDFQIHRAFIGLELVP--GTRRLALMNCLLH 234 (541)
T ss_dssp HHHHHHHHHCCCTTCCEEETTCTTTHHHHHHHHHHHTTTTTTTTSCHHHHHHHHHTSEEEEESCH--HHHHHHHHHHHTT
T ss_pred HHHHHHHHhccCCCCeEecCCcccchHHHHHHHHHHHhhcccccCCHHHHhhhhcceEEEEcCCH--HHHHHHHHHHHHh
Confidence 3444443333456789999999999888777753 13799999995 6999999999888
Q ss_pred CCc------eEEEEeecCCCCcCcCCCCCcEEEEcCCcCCCcc--------------HHHHHHHHHHHhhcCCCeEEEEE
Q 026274 118 KLN------CRVMGLTWGFLDASIFDLNPNIILGADVFYDASA--------------FDDLFATITYLLQSSPGSVFITT 177 (241)
Q Consensus 118 ~~~------~~~~~l~w~~~~~~~~~~~fDlIl~~dvly~~~~--------------~~~ll~~~~~lL~~~~~~~~~~~ 177 (241)
+.. ..+...|.-... .....+||+|++++++-.... .-.++..+.++|++++...++++
T Consensus 235 gi~~~~~~~~~I~~gDtL~~~-~~~~~~fD~Vv~NPPf~~~~~~~~~~~~~~~~~~~~~~Fl~~~l~~Lk~gGr~a~V~p 313 (541)
T 2ar0_A 235 DIEGNLDHGGAIRLGNTLGSD-GENLPKAHIVATNPPFGSAAGTNITRTFVHPTSNKQLCFMQHIIETLHPGGRAAVVVP 313 (541)
T ss_dssp TCCCBGGGTBSEEESCTTSHH-HHTSCCEEEEEECCCCTTCSSCCCCSCCSSCCSCHHHHHHHHHHHHEEEEEEEEEEEE
T ss_pred CCCccccccCCeEeCCCcccc-cccccCCeEEEECCCcccccchhhHhhcCCCCCchHHHHHHHHHHHhCCCCEEEEEec
Confidence 765 455544322110 112357999999988754322 23677888889985433345554
Q ss_pred ee--ccCc--hhHHHHHHHHcCCE
Q 026274 178 YH--NRSG--HHLIEFLMVKWGLK 197 (241)
Q Consensus 178 ~~--~r~~--~~~~~~~~~~~g~~ 197 (241)
.. .+.. ......+.+...+.
T Consensus 314 ~~~L~~~~~~~~iR~~L~~~~~l~ 337 (541)
T 2ar0_A 314 DNVLFEGGKGTDIRRDLMDKCHLH 337 (541)
T ss_dssp HHHHHCCTHHHHHHHHHHHHEEEE
T ss_pred CcceecCcHHHHHHHHHhhcCCEE
Confidence 32 1222 22344555554333
|
| >1qyr_A KSGA, high level kasugamycin resistance protein, S-adenosylMet; adenosine dimethyltransferase, rRNA modification, transferase, translation; 2.10A {Escherichia coli} SCOP: c.66.1.24 PDB: 4adv_V 3tpz_A | Back alignment and structure |
|---|
Probab=98.50 E-value=7.7e-08 Score=81.21 Aligned_cols=88 Identities=9% Similarity=0.062 Sum_probs=57.4
Q ss_pred HHHHHHhccCCCCCCeEEEecCCCCHHHHHHHHhCCE--EEEEcCCCcHHHHHHHHHHHHHcCCceEEEEeecCCCCcC-
Q 026274 58 LAEYVWQQRYRFSGANVVELGAGTSLPGLVAAKVGSN--VTLTDDSNRIEVLKNMRRVCEMNKLNCRVMGLTWGFLDAS- 134 (241)
Q Consensus 58 L~~~l~~~~~~~~~~~VLElGcGtGl~sl~la~~g~~--V~~tD~~~~~~~l~~~~~n~~~n~~~~~~~~l~w~~~~~~- 134 (241)
+++.+........+.+|||+|||+|.++. +++ +.+ |+++|+++ +|++.++++...+ .++++...|..+...+
T Consensus 9 i~~~iv~~~~~~~~~~VLEIG~G~G~lt~-l~~-~~~~~v~avEid~--~~~~~a~~~~~~~-~~v~~i~~D~~~~~~~~ 83 (252)
T 1qyr_A 9 VIDSIVSAINPQKGQAMVEIGPGLAALTE-PVG-ERLDQLTVIELDR--DLAARLQTHPFLG-PKLTIYQQDAMTFNFGE 83 (252)
T ss_dssp HHHHHHHHHCCCTTCCEEEECCTTTTTHH-HHH-TTCSCEEEECCCH--HHHHHHHTCTTTG-GGEEEECSCGGGCCHHH
T ss_pred HHHHHHHhcCCCCcCEEEEECCCCcHHHH-hhh-CCCCeEEEEECCH--HHHHHHHHHhccC-CceEEEECchhhCCHHH
Confidence 34444444444567899999999999988 665 567 99999995 7999998876543 2566666665543211
Q ss_pred cC--CCCCcEEEEcCCcC
Q 026274 135 IF--DLNPNIILGADVFY 150 (241)
Q Consensus 135 ~~--~~~fDlIl~~dvly 150 (241)
.. ....+.|+++-+++
T Consensus 84 ~~~~~~~~~~vvsNlPY~ 101 (252)
T 1qyr_A 84 LAEKMGQPLRVFGNLPYN 101 (252)
T ss_dssp HHHHHTSCEEEEEECCTT
T ss_pred hhcccCCceEEEECCCCC
Confidence 11 11345666665443
|
| >4gqb_A Protein arginine N-methyltransferase 5; TIM barrel, beta-propeller, methyltransferase, methylation, transferase-protein binding complex; HET: 0XU; 2.06A {Homo sapiens} PDB: 4g56_A* | Back alignment and structure |
|---|
Probab=98.45 E-value=5e-07 Score=85.30 Aligned_cols=106 Identities=10% Similarity=0.053 Sum_probs=71.9
Q ss_pred HHHHhccCCCCCCeEEEecCCCCHHHHHHHHh---CC---EEEEEcCCCcHHHHHHHHHHHHHcCC--ceEEEEeecCCC
Q 026274 60 EYVWQQRYRFSGANVVELGAGTSLPGLVAAKV---GS---NVTLTDDSNRIEVLKNMRRVCEMNKL--NCRVMGLTWGFL 131 (241)
Q Consensus 60 ~~l~~~~~~~~~~~VLElGcGtGl~sl~la~~---g~---~V~~tD~~~~~~~l~~~~~n~~~n~~--~~~~~~l~w~~~ 131 (241)
+++..+....+++.|||+|||+|.++.++++. ++ +|.+++.++ +...++++++.|+. .+++.+.+..+.
T Consensus 347 d~~~~~~~~~~~~vVldVGaGrGpLv~~al~A~a~~~~~vkVyAVEknp---~A~~a~~~v~~N~~~dkVtVI~gd~eev 423 (637)
T 4gqb_A 347 DRVPEEEKDTNVQVLMVLGAGRGPLVNASLRAAKQADRRIKLYAVEKNP---NAVVTLENWQFEEWGSQVTVVSSDMREW 423 (637)
T ss_dssp HHSCGGGTTTCEEEEEEESCTTSHHHHHHHHHHHHTTCEEEEEEEESCH---HHHHHHHHHHHHTTGGGEEEEESCTTTC
T ss_pred HhhhhccccCCCcEEEEECCCCcHHHHHHHHHHHhcCCCcEEEEEECCH---HHHHHHHHHHhccCCCeEEEEeCcceec
Confidence 33333444556678999999999995555544 33 689999995 67778888888876 467777666655
Q ss_pred CcCcCCCCCcEEEEcCCc----CCCccHHHHHHHHHHHhhcCCCeEEE
Q 026274 132 DASIFDLNPNIILGADVF----YDASAFDDLFATITYLLQSSPGSVFI 175 (241)
Q Consensus 132 ~~~~~~~~fDlIl~~dvl----y~~~~~~~ll~~~~~lL~~~~~~~~~ 175 (241)
. .++++|+||+ +.+ .+...+ ..+....++|+ |+|+++
T Consensus 424 ~---LPEKVDIIVS-EwMG~fLl~E~ml-evL~Ardr~LK--PgGimi 464 (637)
T 4gqb_A 424 V---APEKADIIVS-ELLGSFADNELSP-ECLDGAQHFLK--DDGVSI 464 (637)
T ss_dssp C---CSSCEEEEEC-CCCBTTBGGGCHH-HHHHHHGGGEE--EEEEEE
T ss_pred c---CCcccCEEEE-EcCcccccccCCH-HHHHHHHHhcC--CCcEEc
Confidence 3 3468999983 333 223333 57778889998 455443
|
| >3lkd_A Type I restriction-modification system methyltransferase subunit; Q5M500_STRT2, STU0711, NESG, SUR80, structural genomics, PSI-2; 2.25A {Streptococcus thermophilus} | Back alignment and structure |
|---|
Probab=98.43 E-value=6.5e-06 Score=76.63 Aligned_cols=143 Identities=10% Similarity=-0.055 Sum_probs=88.8
Q ss_pred HHHHHHHHHhccCCCCCCeEEEecCCCCHHHHHHHHh-----CCEEEEEcCCCcHHHHHHHHHHHHHcCCc---eEEEEe
Q 026274 55 SVILAEYVWQQRYRFSGANVVELGAGTSLPGLVAAKV-----GSNVTLTDDSNRIEVLKNMRRVCEMNKLN---CRVMGL 126 (241)
Q Consensus 55 s~~L~~~l~~~~~~~~~~~VLElGcGtGl~sl~la~~-----g~~V~~tD~~~~~~~l~~~~~n~~~n~~~---~~~~~l 126 (241)
+..+++.+........+.+|+|.+||||.+.+.+++. ..+++|.|+++ .++..++.|+..+++. ..+...
T Consensus 206 v~lmv~ll~~~~~~~~~~~VlDPaCGSG~fLi~a~~~l~~~~~~~i~G~Eid~--~~~~lA~~Nl~l~gi~~~~~~I~~g 283 (542)
T 3lkd_A 206 AKLMTQIAFLGREDKQGFTLYDATMGSGSLLLNAKRYSRQPQTVVYFGQELNT--STYNLARMNMILHGVPIENQFLHNA 283 (542)
T ss_dssp HHHHHHHHHTTCTTCTTCEEEETTCTTSTTGGGHHHHCSCTTTCEEEEEESCH--HHHHHHHHHHHHTTCCGGGEEEEES
T ss_pred HHHHHHHHhcccCCCCCCEEeecccchhHHHHHHHHHHHhccCceEEEEECcH--HHHHHHHHHHHHcCCCcCccceEec
Confidence 3444555443222346779999999999877777765 35899999995 6999999999999873 445544
Q ss_pred ecCCCCcC-cCCCCCcEEEEcCCcCCCc--------c---------------HHHHHHHHHHHhh-cCCCeEEEEEeec-
Q 026274 127 TWGFLDAS-IFDLNPNIILGADVFYDAS--------A---------------FDDLFATITYLLQ-SSPGSVFITTYHN- 180 (241)
Q Consensus 127 ~w~~~~~~-~~~~~fDlIl~~dvly~~~--------~---------------~~~ll~~~~~lL~-~~~~~~~~~~~~~- 180 (241)
|.-....+ ....+||+|++++++-... + .-.++..+.++|+ +++...++++...
T Consensus 284 DtL~~d~p~~~~~~fD~IvaNPPf~~~~~~~~~~~~d~rf~~~G~~~~~s~~~~~Fl~~~l~~Lk~~gGr~a~VlP~g~L 363 (542)
T 3lkd_A 284 DTLDEDWPTQEPTNFDGVLMNPPYSAKWSASSGFMDDPRFSPFGKLAPKSKADFAFLLHGYYHLKQDNGVMAIVLPHGVL 363 (542)
T ss_dssp CTTTSCSCCSSCCCBSEEEECCCTTCCCCCCGGGGGSTTTGGGSSCCCTTCCHHHHHHHHHHTBCTTTCEEEEEEETHHH
T ss_pred ceecccccccccccccEEEecCCcCCccccchhhhhhhhhhhhhhcCCCchhhHHHHHHHHHHhCCCceeEEEEecchHh
Confidence 43322101 2345899999998873210 0 0136777778887 6554556666432
Q ss_pred -cCc--hhHHHHHHHHcCCEEE
Q 026274 181 -RSG--HHLIEFLMVKWGLKCV 199 (241)
Q Consensus 181 -r~~--~~~~~~~~~~~g~~~~ 199 (241)
+.. ....+.+.+...+.+.
T Consensus 364 f~~~~~~~iRk~Lle~~~l~~I 385 (542)
T 3lkd_A 364 FRGNAEGTIRKALLEEGAIDTV 385 (542)
T ss_dssp HCCTHHHHHHHHHHHTTCEEEE
T ss_pred hCCchhHHHHHHHHhCCceeEE
Confidence 222 2344455565554443
|
| >2k4m_A TR8_protein, UPF0146 protein MTH_1000; alpha+beta, rossman fold, structural genomics, PSI-2; NMR {Methanothermobacterthermautotrophicus str} | Back alignment and structure |
|---|
Probab=98.42 E-value=4.8e-07 Score=69.73 Aligned_cols=46 Identities=30% Similarity=0.267 Sum_probs=38.4
Q ss_pred HHHHHHHHhccCCCCCCeEEEecCCCC-HHHHHHHH-hCCEEEEEcCCCc
Q 026274 56 VILAEYVWQQRYRFSGANVVELGAGTS-LPGLVAAK-VGSNVTLTDDSNR 103 (241)
Q Consensus 56 ~~L~~~l~~~~~~~~~~~VLElGcGtG-l~sl~la~-~g~~V~~tD~~~~ 103 (241)
..|++||.++. ..+.+|||+|||.| -.+..|++ .|..|++||+++.
T Consensus 23 e~LaeYI~~~~--~~~~rVlEVG~G~g~~vA~~La~~~g~~V~atDInp~ 70 (153)
T 2k4m_A 23 NDLAVYIIRCS--GPGTRVVEVGAGRFLYVSDYIRKHSKVDLVLTDIKPS 70 (153)
T ss_dssp HHHHHHHHHHS--CSSSEEEEETCTTCCHHHHHHHHHSCCEEEEECSSCS
T ss_pred HHHHHHHHhcC--CCCCcEEEEccCCChHHHHHHHHhCCCeEEEEECCcc
Confidence 35889987653 23569999999999 59999997 8999999999973
|
| >3khk_A Type I restriction-modification system methylation subunit; structural genomics, PSI-2, protein structure initiative; 2.55A {Methanosarcina mazei} | Back alignment and structure |
|---|
Probab=98.36 E-value=4.2e-06 Score=77.97 Aligned_cols=149 Identities=9% Similarity=0.012 Sum_probs=89.1
Q ss_pred eEEEecCCCCHHHHHHHHh-----------------CCEEEEEcCCCcHHHHHHHHHHHHHcCCceEEEEeecCCCCc-C
Q 026274 73 NVVELGAGTSLPGLVAAKV-----------------GSNVTLTDDSNRIEVLKNMRRVCEMNKLNCRVMGLTWGFLDA-S 134 (241)
Q Consensus 73 ~VLElGcGtGl~sl~la~~-----------------g~~V~~tD~~~~~~~l~~~~~n~~~n~~~~~~~~l~w~~~~~-~ 134 (241)
+|||.+||||.+.+.+++. ..++.|.|+++ .++..++.|+..+++...+ .+.+++... +
T Consensus 247 ~VlDPaCGSG~fLi~a~~~l~~~~~~~~~~~~~~~~~~~i~G~Eid~--~~~~lA~~Nl~l~gi~~~i-~i~~gDtL~~~ 323 (544)
T 3khk_A 247 RVYDPAMGSGGFFVSSDKFIEKHANVKHYNASEQKKQISVYGQESNP--TTWKLAAMNMVIRGIDFNF-GKKNADSFLDD 323 (544)
T ss_dssp EEEESSCTTCHHHHHHHHHHHHHHHHHTSCHHHHGGGEEEEECCCCH--HHHHHHHHHHHHTTCCCBC-CSSSCCTTTSC
T ss_pred eEeCcccCcCcHHHHHHHHHHHhccccccchHHHhhhceEEEEeCCH--HHHHHHHHHHHHhCCCccc-ceeccchhcCc
Confidence 8999999999776666432 34799999995 6999999999999876442 113333221 1
Q ss_pred -cCCCCCcEEEEcCCcCCCc-----------------------------cHHHHHHHHHHHhhcCCCeEEEEEee--ccC
Q 026274 135 -IFDLNPNIILGADVFYDAS-----------------------------AFDDLFATITYLLQSSPGSVFITTYH--NRS 182 (241)
Q Consensus 135 -~~~~~fDlIl~~dvly~~~-----------------------------~~~~ll~~~~~lL~~~~~~~~~~~~~--~r~ 182 (241)
....+||+|++++++-... ..-.++..+.++|++++...++++.. .+.
T Consensus 324 ~~~~~~fD~Iv~NPPf~~~~~~~~~~~~d~r~~~g~~~~~~~~~~~~~~~~~~Fl~~~l~~Lk~gGr~aiVlP~g~L~~~ 403 (544)
T 3khk_A 324 QHPDLRADFVMTNPPFNMKDWWHEKLADDPRWTINTNGEKRILTPPTGNANFAWMLHMLYHLAPTGSMALLLANGSMSSN 403 (544)
T ss_dssp SCTTCCEEEEEECCCSSCCSCCCGGGTTCGGGEECCC--CEECCCCTTCTHHHHHHHHHHTEEEEEEEEEEEETHHHHCC
T ss_pred ccccccccEEEECCCcCCccccchhhhhhhhhhcCcccccccccCCCcchhHHHHHHHHHHhccCceEEEEecchhhhcC
Confidence 2235899999998875310 01157778888888654445555532 132
Q ss_pred --c-hhHHHHHHHHcCCEEEEEecCCCCCCcccccccCCCeEEEEEEeccC
Q 026274 183 --G-HHLIEFLMVKWGLKCVKLVDGFSFLPHYKARELNGNIQLAEIVLNHE 230 (241)
Q Consensus 183 --~-~~~~~~~~~~~g~~~~~i~~~~~~~p~~~~~~~~~~~~l~~i~~~~~ 230 (241)
. ....+.+.+...+.+..-.- +.. ...-.....++.+.+...
T Consensus 404 ~~~~~~iRk~Lle~~~l~aII~LP-----~~l-F~~t~i~t~Ilvl~K~k~ 448 (544)
T 3khk_A 404 TNNEGEIRKTLVEQDLVECMVALP-----GQL-FTNTQIPACIWFLTKDKN 448 (544)
T ss_dssp GGGHHHHHHHHHHTTCEEEEEECC-----TTB-CCSCSSCEEEEEEESCCS
T ss_pred cchHHHHHHHHHhCCcHhEEEECC-----CCC-CCCCCCCeEEEEEecCCC
Confidence 2 23444555554444433211 111 112334567777766554
|
| >3cvo_A Methyltransferase-like protein of unknown functio; rossman fold, structural genomics, joint center for structur genomics, JCSG; HET: MSE PG4; 1.80A {Silicibacter pomeroyi dss-3} | Back alignment and structure |
|---|
Probab=98.32 E-value=7.3e-06 Score=66.78 Aligned_cols=110 Identities=15% Similarity=0.127 Sum_probs=71.1
Q ss_pred CCCeEEEecCCCCHHHHHHHHh-CCEEEEEcCCCcHHHHHHHHHHHHHcCC----ceEEEEeecCCC------C------
Q 026274 70 SGANVVELGAGTSLPGLVAAKV-GSNVTLTDDSNRIEVLKNMRRVCEMNKL----NCRVMGLTWGFL------D------ 132 (241)
Q Consensus 70 ~~~~VLElGcGtGl~sl~la~~-g~~V~~tD~~~~~~~l~~~~~n~~~n~~----~~~~~~l~w~~~------~------ 132 (241)
+.++|||+|| |.-++.+|+. +.+|+.+|.++ +..+.+++|++.++. ++++...+.++. .
T Consensus 30 ~a~~VLEiGt--GySTl~lA~~~~g~VvtvE~d~--~~~~~ar~~l~~~g~~~~~~I~~~~gda~~~~~wg~p~~~~~~~ 105 (202)
T 3cvo_A 30 EAEVILEYGS--GGSTVVAAELPGKHVTSVESDR--AWARMMKAWLAANPPAEGTEVNIVWTDIGPTGDWGHPVSDAKWR 105 (202)
T ss_dssp HCSEEEEESC--SHHHHHHHTSTTCEEEEEESCH--HHHHHHHHHHHHSCCCTTCEEEEEECCCSSBCGGGCBSSSTTGG
T ss_pred CCCEEEEECc--hHHHHHHHHcCCCEEEEEeCCH--HHHHHHHHHHHHcCCCCCCceEEEEeCchhhhcccccccchhhh
Confidence 4579999998 4688888886 67999999995 799999999999886 466665553321 0
Q ss_pred --c-------Cc-CCCCCcEEEEcCCcCCCccHHHHHHHHHHHhhcCCCeEEEEEe-eccCchhHHHHH
Q 026274 133 --A-------SI-FDLNPNIILGADVFYDASAFDDLFATITYLLQSSPGSVFITTY-HNRSGHHLIEFL 190 (241)
Q Consensus 133 --~-------~~-~~~~fDlIl~~dvly~~~~~~~ll~~~~~lL~~~~~~~~~~~~-~~r~~~~~~~~~ 190 (241)
. .. ...+||+|+.-- .....-+..+..+|+ +||++++.. -.|........+
T Consensus 106 ~l~~~~~~i~~~~~~~~fDlIfIDg-----~k~~~~~~~~l~~l~--~GG~Iv~DNv~~r~~y~~v~~~ 167 (202)
T 3cvo_A 106 SYPDYPLAVWRTEGFRHPDVVLVDG-----RFRVGCALATAFSIT--RPVTLLFDDYSQRRWQHQVEEF 167 (202)
T ss_dssp GTTHHHHGGGGCTTCCCCSEEEECS-----SSHHHHHHHHHHHCS--SCEEEEETTGGGCSSGGGGHHH
T ss_pred hHHHHhhhhhccccCCCCCEEEEeC-----CCchhHHHHHHHhcC--CCeEEEEeCCcCCcchHHHHHH
Confidence 0 01 125799999632 111233334447776 788887764 344433333333
|
| >3s1s_A Restriction endonuclease bpusi; PD--(D/E)XK catalytic motif, gamma-N6M-adenosine methyltrans S-adenosyl-methionine binding, hydrolase; HET: SAH; 2.35A {Bacillus pumilus} | Back alignment and structure |
|---|
Probab=98.28 E-value=1.4e-05 Score=76.97 Aligned_cols=128 Identities=15% Similarity=0.072 Sum_probs=78.0
Q ss_pred CCCCeEEEecCCCCHHHHHHHHhC-----CEEEEEcCCCcHHHHHHH--HHHHHHcCC----ce-EEEEeecCCCCcCcC
Q 026274 69 FSGANVVELGAGTSLPGLVAAKVG-----SNVTLTDDSNRIEVLKNM--RRVCEMNKL----NC-RVMGLTWGFLDASIF 136 (241)
Q Consensus 69 ~~~~~VLElGcGtGl~sl~la~~g-----~~V~~tD~~~~~~~l~~~--~~n~~~n~~----~~-~~~~l~w~~~~~~~~ 136 (241)
..+.+|||.|||||.+.+.+++.. .+++|.|+++ .++..+ +.|+..|.. .. .+..-++... ....
T Consensus 320 ~~g~rVLDPaCGSG~FLIaaA~~l~ei~~~~IyGvEIDp--~Al~LAK~RlNL~lN~LlhGi~~~~I~~dD~L~~-~~~~ 396 (878)
T 3s1s_A 320 TEDEVISDPAAGSGNLLATVSAGFNNVMPRQIWANDIET--LFLELLSIRLGLLFPQLVSSNNAPTITGEDVCSL-NPED 396 (878)
T ss_dssp CTTCEEEETTCTTSHHHHHHHHTSTTCCGGGEEEECSCG--GGHHHHHHHHHTTSTTTCBTTBCCEEECCCGGGC-CGGG
T ss_pred CCCCEEEECCCCccHHHHHHHHHhcccCCCeEEEEECCH--HHHHHHHHHHHHHHhhhhcCCCcceEEecchhcc-cccc
Confidence 357799999999999999988753 3799999997 488888 777765433 22 3332222221 1112
Q ss_pred CCCCcEEEEcCCcCCCc-----------------------------cHHHHHHHHHHHhhcCCCeEEEEEeecc--C---
Q 026274 137 DLNPNIILGADVFYDAS-----------------------------AFDDLFATITYLLQSSPGSVFITTYHNR--S--- 182 (241)
Q Consensus 137 ~~~fDlIl~~dvly~~~-----------------------------~~~~ll~~~~~lL~~~~~~~~~~~~~~r--~--- 182 (241)
..+||+|++++++.... ....++....++|+++|...++++...- .
T Consensus 397 ~~kFDVVIgNPPYg~~~~~~~e~kd~~~r~~~g~p~~p~s~~G~~DLy~aFIe~Al~lLKpGGrLAfIlP~s~Lf~sg~~ 476 (878)
T 3s1s_A 397 FANVSVVVMNPPYVSGVTDPAIKRKFAHKIIQLTGNRPQTLFGQIGVEALFLELVTELVQDGTVISAIMPKQYLTAQGNE 476 (878)
T ss_dssp GTTEEEEEECCBCCSSCCCHHHHHHHHHHHHHHHSSCCSSCSSSCCHHHHHHHHHHHHSCTTCEEEEEEETHHHHCCSHH
T ss_pred cCCCCEEEECCCccccccchhhhhhHHHHhhhhccccccccccccchHHHHHHHHHHhcCCCcEEEEEEChHHhccCChH
Confidence 35899999999883210 1334667788888855444555553222 1
Q ss_pred chhHHHHHHHHcCCEEE
Q 026274 183 GHHLIEFLMVKWGLKCV 199 (241)
Q Consensus 183 ~~~~~~~~~~~~g~~~~ 199 (241)
.....+++.++..+...
T Consensus 477 ~kkLRk~LLe~~~I~aI 493 (878)
T 3s1s_A 477 SKAFREFLVGNFGLEHI 493 (878)
T ss_dssp HHHHHHHHTTTTCEEEE
T ss_pred HHHHHHHHHhCCCeEEE
Confidence 22344445555555433
|
| >2qy6_A UPF0209 protein YFCK; structural genomics, unknown function, PSI-2, protein struct initiative; 2.00A {Escherichia coli} | Back alignment and structure |
|---|
Probab=98.22 E-value=9.7e-06 Score=68.48 Aligned_cols=125 Identities=16% Similarity=0.075 Sum_probs=74.2
Q ss_pred CCCeEEEecCCCCHHHHHHHHh-------C-------CEEEEEcCCCc-HHHHH-----------HHHHHHHHc------
Q 026274 70 SGANVVELGAGTSLPGLVAAKV-------G-------SNVTLTDDSNR-IEVLK-----------NMRRVCEMN------ 117 (241)
Q Consensus 70 ~~~~VLElGcGtGl~sl~la~~-------g-------~~V~~tD~~~~-~~~l~-----------~~~~n~~~n------ 117 (241)
++.+|||+|+|+|+..+.+++. + .++++++..+. .+.+. .++.++..-
T Consensus 60 ~~~~ILEiGfGtG~n~l~~~~~~~~~~~~~p~~~~~~l~~isiE~~p~~~~~l~~a~~~~p~l~~~a~~l~~~w~~~~~g 139 (257)
T 2qy6_A 60 PLFVVAESGFGTGLNFLTLWQAFDQFREAHPQAQLQRLHFISFEKFPLTRADLALAHQHWPELAPWAEQLQAQWPMPLPG 139 (257)
T ss_dssp SEEEEEESCCTTSHHHHHHHHHHHHHHHHCTTSSCCEEEEEEEESSCCCHHHHHHHHTTCGGGHHHHHHHHHTCCCSCSE
T ss_pred CCCEEEEECCChHHHHHHHHHHHHhhhhhCCCCCcceeEEEEEECCcCCHHHHHHHHhcChhHHHHHHHHHHhccccccc
Confidence 3468999999999988886653 2 37999998861 12332 445554431
Q ss_pred ---------CCceEEEEeecCCCCcCcCC---CCCcEEEEcCCcC---CCc-cHHHHHHHHHHHhhcCCCeEEEEEeecc
Q 026274 118 ---------KLNCRVMGLTWGFLDASIFD---LNPNIILGADVFY---DAS-AFDDLFATITYLLQSSPGSVFITTYHNR 181 (241)
Q Consensus 118 ---------~~~~~~~~l~w~~~~~~~~~---~~fDlIl~~dvly---~~~-~~~~ll~~~~~lL~~~~~~~~~~~~~~r 181 (241)
..++++...|..+......+ ..||+|+. |.+- +++ --+.+++.+.++|+ +||++. .|..
T Consensus 140 ~~r~~~~~~~~~l~l~~GDa~~~l~~~~~~~~~~~D~ifl-D~fsp~~~p~lw~~~~l~~l~~~L~--pGG~l~-tysa- 214 (257)
T 2qy6_A 140 CHRLLLDEGRVTLDLWFGDINELISQLDDSLNQKVDAWFL-DGFAPAKNPDMWTQNLFNAMARLAR--PGGTLA-TFTS- 214 (257)
T ss_dssp EEEEEEC--CEEEEEEESCHHHHGGGSCGGGTTCEEEEEE-CSSCTTTCGGGCCHHHHHHHHHHEE--EEEEEE-ESCC-
T ss_pred hhheeccCCceEEEEEECcHHHHHhhcccccCCeEEEEEE-CCCCcccChhhcCHHHHHHHHHHcC--CCcEEE-EEeC-
Confidence 12233343333322222211 27999997 4432 222 24679999999998 566555 3332
Q ss_pred CchhHHHHHHHHcCCEEEEE
Q 026274 182 SGHHLIEFLMVKWGLKCVKL 201 (241)
Q Consensus 182 ~~~~~~~~~~~~~g~~~~~i 201 (241)
...+..-+...||.+...
T Consensus 215 --a~~vrr~L~~aGF~v~~~ 232 (257)
T 2qy6_A 215 --AGFVRRGLQEAGFTMQKR 232 (257)
T ss_dssp --BHHHHHHHHHHTEEEEEE
T ss_pred --CHHHHHHHHHCCCEEEeC
Confidence 123555567789998876
|
| >3evf_A RNA-directed RNA polymerase NS5; NS5 methyltransferase, RNA CAP binding, binding, capsid protein; HET: GTA SAH; 1.45A {Yellow fever virus} SCOP: c.66.1.0 PDB: 3evb_A* 3evc_A* 3evd_A* 3eve_A* 3eva_A* | Back alignment and structure |
|---|
Probab=98.11 E-value=2.3e-05 Score=66.49 Aligned_cols=127 Identities=15% Similarity=0.013 Sum_probs=76.6
Q ss_pred CcceEEeccHHHHHHHHHhccCCCCCCeEEEecCCCCHHHHHHHHh-CC-EEEEEcCCCcHHHHHHHHHHHHHcCCceEE
Q 026274 46 EYGLFVWPCSVILAEYVWQQRYRFSGANVVELGAGTSLPGLVAAKV-GS-NVTLTDDSNRIEVLKNMRRVCEMNKLNCRV 123 (241)
Q Consensus 46 ~~g~~~W~~s~~L~~~l~~~~~~~~~~~VLElGcGtGl~sl~la~~-g~-~V~~tD~~~~~~~l~~~~~n~~~n~~~~~~ 123 (241)
.+|...=.+++.|.+...+ .....+.+|||||||+|-++..+++. ++ +|.+.|+... +....... ...+.++..
T Consensus 51 ~~~~YrSRaA~KL~ei~ek-~~l~~~~~VLDLGaAPGGWSQvAa~~~~~~~v~g~dVGvD--l~~~pi~~-~~~g~~ii~ 126 (277)
T 3evf_A 51 DTGVAVSRGTAKLRWFHER-GYVKLEGRVIDLGCGRGGWCYYAAAQKEVSGVKGFTLGRD--GHEKPMNV-QSLGWNIIT 126 (277)
T ss_dssp SSCBCSSTHHHHHHHHHHT-TSSCCCEEEEEETCTTCHHHHHHHTSTTEEEEEEECCCCT--TCCCCCCC-CBTTGGGEE
T ss_pred cCCCccccHHHHHHHHHHh-CCCCCCCEEEEecCCCCHHHHHHHHhcCCCcceeEEEecc--Cccccccc-CcCCCCeEE
Confidence 4577777899999999888 44456778999999999999998875 55 6888888741 10000000 000112222
Q ss_pred EEeecCCCCcCcCCCCCcEEEEcCCcCCCc----cH-H--HHHHHHHHHhhcCCCeEEEEEeec
Q 026274 124 MGLTWGFLDASIFDLNPNIILGADVFYDAS----AF-D--DLFATITYLLQSSPGSVFITTYHN 180 (241)
Q Consensus 124 ~~l~w~~~~~~~~~~~fDlIl~~dvly~~~----~~-~--~ll~~~~~lL~~~~~~~~~~~~~~ 180 (241)
..-+.. .....+.+||+|++ |.-.+.. +. . .|++.+.+.|+++| |.|++-.-.
T Consensus 127 ~~~~~d--v~~l~~~~~DlVls-D~apnsG~~~~D~~rs~~LL~~a~~~LkpG~-G~FV~KVf~ 186 (277)
T 3evf_A 127 FKDKTD--IHRLEPVKCDTLLC-DIGESSSSSVTEGERTVRVLDTVEKWLACGV-DNFCVKVLA 186 (277)
T ss_dssp EECSCC--TTTSCCCCCSEEEE-CCCCCCSCHHHHHHHHHHHHHHHHHHHTTCC-SEEEEEESC
T ss_pred Eeccce--ehhcCCCCccEEEe-cCccCcCchHHHHHHHHHHHHHHHHHhCCCC-CeEEEEecC
Confidence 222211 12334568999997 6654421 11 1 35788889998543 566665433
|
| >3ua3_A Protein arginine N-methyltransferase 5; TIM-barrel, rossmann fold, beta-barrel, symmetric arginine dimethylase, SAM binding; HET: SAH; 3.00A {Caenorhabditis elegans} PDB: 3ua4_A | Back alignment and structure |
|---|
Probab=98.00 E-value=5.8e-06 Score=78.51 Aligned_cols=99 Identities=12% Similarity=0.169 Sum_probs=63.4
Q ss_pred CCeEEEecCCCCHHHHHH---HH-hC---------C--EEEEEcCCCcHHHHHHHHHHHHHcCC--ceEEEEeecCCCCc
Q 026274 71 GANVVELGAGTSLPGLVA---AK-VG---------S--NVTLTDDSNRIEVLKNMRRVCEMNKL--NCRVMGLTWGFLDA 133 (241)
Q Consensus 71 ~~~VLElGcGtGl~sl~l---a~-~g---------~--~V~~tD~~~~~~~l~~~~~n~~~n~~--~~~~~~l~w~~~~~ 133 (241)
++.|||+|||+|.++.++ ++ .| . +|+++|.++ .+...++.... |+. .+++...+..+...
T Consensus 410 ~~VVldVGaGtGpLs~~al~A~~~a~~~~~~~~~~~~~kVyAVEknp--~A~~~l~~~~~-Ng~~d~VtVI~gd~eev~l 486 (745)
T 3ua3_A 410 TVVIYLLGGGRGPIGTKILKSEREYNNTFRQGQESLKVKLYIVEKNP--NAIVTLKYMNV-RTWKRRVTIIESDMRSLPG 486 (745)
T ss_dssp EEEEEEESCTTCHHHHHHHHHHHHHHHHHSTTSCCCEEEEEEEECCH--HHHHHHHHHHH-HTTTTCSEEEESCGGGHHH
T ss_pred CcEEEEECCCCCHHHHHHHHHHHHhCccccccccccccEEEEEeCCh--HHHHHHHHHHh-cCCCCeEEEEeCchhhccc
Confidence 467999999999997543 32 23 2 899999995 35544444333 654 47777776665432
Q ss_pred C---cCCCCCcEEEEcCCcCC---CccHHHHHHHHHHHhhcCCCeEEE
Q 026274 134 S---IFDLNPNIILGADVFYD---ASAFDDLFATITYLLQSSPGSVFI 175 (241)
Q Consensus 134 ~---~~~~~fDlIl~~dvly~---~~~~~~ll~~~~~lL~~~~~~~~~ 175 (241)
+ ...++.|+||+ +.+=+ .+.....+..+.+.|+ ++|+++
T Consensus 487 p~~~~~~ekVDIIVS-ElmGsfl~nEL~pe~Ld~v~r~Lk--p~Gi~i 531 (745)
T 3ua3_A 487 IAKDRGFEQPDIIVS-ELLGSFGDNELSPECLDGVTGFLK--PTTISI 531 (745)
T ss_dssp HHHHTTCCCCSEEEE-CCCBTTBGGGSHHHHHHTTGGGSC--TTCEEE
T ss_pred ccccCCCCcccEEEE-eccccccchhccHHHHHHHHHhCC--CCcEEE
Confidence 1 01468999995 44422 2355678888889998 445444
|
| >2zig_A TTHA0409, putative modification methylase; methyltransferase, S- adenosylmethionine, structural genomics, NPPSFA; 2.10A {Thermus thermophilus} PDB: 2zie_A* 2zif_A | Back alignment and structure |
|---|
Probab=97.97 E-value=2.6e-05 Score=66.95 Aligned_cols=58 Identities=21% Similarity=0.106 Sum_probs=46.7
Q ss_pred HHHHHHHhccCCCCCCeEEEecCCCCHHHHHHHHhCCEEEEEcCCCcHHHHHHHHHHHHHc
Q 026274 57 ILAEYVWQQRYRFSGANVVELGAGTSLPGLVAAKVGSNVTLTDDSNRIEVLKNMRRVCEMN 117 (241)
Q Consensus 57 ~L~~~l~~~~~~~~~~~VLElGcGtGl~sl~la~~g~~V~~tD~~~~~~~l~~~~~n~~~n 117 (241)
.|.+.+..... .+|..|||++||+|..++++++.|.+++++|+++ ++++.+++++...
T Consensus 223 ~l~~~~i~~~~-~~~~~vlD~f~GsGt~~~~a~~~g~~~~g~e~~~--~~~~~a~~r~~~~ 280 (297)
T 2zig_A 223 ELAERLVRMFS-FVGDVVLDPFAGTGTTLIAAARWGRRALGVELVP--RYAQLAKERFARE 280 (297)
T ss_dssp HHHHHHHHHHC-CTTCEEEETTCTTTHHHHHHHHTTCEEEEEESCH--HHHHHHHHHHHHH
T ss_pred HHHHHHHHHhC-CCCCEEEECCCCCCHHHHHHHHcCCeEEEEeCCH--HHHHHHHHHHHHh
Confidence 34444433222 4678999999999999999999999999999995 7999999988754
|
| >3gcz_A Polyprotein; flavivirus, RNA capping, methyltransferase, viral enzyme STR ATP-binding, nucleotide-binding, RNA replication, structura genomics; HET: SAM; 1.70A {Yokose virus} | Back alignment and structure |
|---|
Probab=97.88 E-value=1.5e-05 Score=67.65 Aligned_cols=126 Identities=15% Similarity=-0.052 Sum_probs=76.7
Q ss_pred ceEEeccHHHHHHHHHhccCCCCCCeEEEecCCCCHHHHHHHH-hCC-EEEEEcCCCcHHHHHHHHHHHHHcCCceEEEE
Q 026274 48 GLFVWPCSVILAEYVWQQRYRFSGANVVELGAGTSLPGLVAAK-VGS-NVTLTDDSNRIEVLKNMRRVCEMNKLNCRVMG 125 (241)
Q Consensus 48 g~~~W~~s~~L~~~l~~~~~~~~~~~VLElGcGtGl~sl~la~-~g~-~V~~tD~~~~~~~l~~~~~n~~~n~~~~~~~~ 125 (241)
|..+=.|++.|.+...+. ....+.+|||||||.|-++.++++ .++ +|+++|+... +...... ....+.++...
T Consensus 69 g~YrSRAAfKL~ei~eK~-~Lk~~~~VLDLGaAPGGWsQvAa~~~gv~sV~GvdvG~d--~~~~pi~-~~~~g~~ii~~- 143 (282)
T 3gcz_A 69 GIAVSRGSAKLRWMEERG-YVKPTGIVVDLGCGRGGWSYYAASLKNVKKVMAFTLGVQ--GHEKPIM-RTTLGWNLIRF- 143 (282)
T ss_dssp SBCSSTHHHHHHHHHHTT-SCCCCEEEEEETCTTCHHHHHHHTSTTEEEEEEECCCCT--TSCCCCC-CCBTTGGGEEE-
T ss_pred CCEecHHHHHHHHHHHhc-CCCCCCEEEEeCCCCCHHHHHHHHhcCCCeeeeEEeccC--ccccccc-cccCCCceEEe-
Confidence 666778999999888875 455677999999999999999886 455 7999999742 1100000 00001122111
Q ss_pred eecCCCCcCcCCCCCcEEEEcCCcCCCcc-----H--HHHHHHHHHHhhcCCCeEEEEEeec
Q 026274 126 LTWGFLDASIFDLNPNIILGADVFYDASA-----F--DDLFATITYLLQSSPGSVFITTYHN 180 (241)
Q Consensus 126 l~w~~~~~~~~~~~fDlIl~~dvly~~~~-----~--~~ll~~~~~lL~~~~~~~~~~~~~~ 180 (241)
.-+.........++|+|++ |.-.+... . -.|++.....|+++++|.|++-.-.
T Consensus 144 -~~~~dv~~l~~~~~DvVLS-DmApnsG~~~~D~~rs~~LL~~A~~~Lk~g~~G~Fv~KvF~ 203 (282)
T 3gcz_A 144 -KDKTDVFNMEVIPGDTLLC-DIGESSPSIAVEEQRTLRVLNCAKQWLQEGNYTEFCIKVLC 203 (282)
T ss_dssp -ECSCCGGGSCCCCCSEEEE-CCCCCCSCHHHHHHHHHHHHHHHHHHHHHHCCCEEEEEESC
T ss_pred -eCCcchhhcCCCCcCEEEe-cCccCCCChHHHHHHHHHHHHHHHHHcCCCCCCcEEEEEec
Confidence 1110111233468999996 55544211 1 1357788899996654777765444
|
| >4auk_A Ribosomal RNA large subunit methyltransferase M; YGDE; HET: TLA PGE; 1.90A {Escherichia coli} PDB: 4atn_A* 4b17_A* | Back alignment and structure |
|---|
Probab=97.87 E-value=0.00029 Score=62.29 Aligned_cols=86 Identities=14% Similarity=-0.007 Sum_probs=57.2
Q ss_pred CCCCCeEEEecCCCCHHHHHHHHhCCEEEEEcCCCcHHHHHHHHHHHHHcCCceEEEEeecCCCCcCcCCCCCcEEEEcC
Q 026274 68 RFSGANVVELGAGTSLPGLVAAKVGSNVTLTDDSNRIEVLKNMRRVCEMNKLNCRVMGLTWGFLDASIFDLNPNIILGAD 147 (241)
Q Consensus 68 ~~~~~~VLElGcGtGl~sl~la~~g~~V~~tD~~~~~~~l~~~~~n~~~n~~~~~~~~l~w~~~~~~~~~~~fDlIl~~d 147 (241)
..+|.+||||||++|-++..+++.|++|+++|..+ |-..+. ....+.+.+.|..... ....++|+|++ |
T Consensus 209 l~~G~~vlDLGAaPGGWT~~l~~rg~~V~aVD~~~---l~~~l~-----~~~~V~~~~~d~~~~~--~~~~~~D~vvs-D 277 (375)
T 4auk_A 209 LANGMWAVDLGACPGGWTYQLVKRNMWVYSVDNGP---MAQSLM-----DTGQVTWLREDGFKFR--PTRSNISWMVC-D 277 (375)
T ss_dssp SCTTCEEEEETCTTCHHHHHHHHTTCEEEEECSSC---CCHHHH-----TTTCEEEECSCTTTCC--CCSSCEEEEEE-C
T ss_pred CCCCCEEEEeCcCCCHHHHHHHHCCCEEEEEEhhh---cChhhc-----cCCCeEEEeCcccccc--CCCCCcCEEEE-c
Confidence 34789999999999999999999999999999986 333322 1234555554433322 22357999985 6
Q ss_pred CcCCCccHHHHHHHHHHHhh
Q 026274 148 VFYDASAFDDLFATITYLLQ 167 (241)
Q Consensus 148 vly~~~~~~~ll~~~~~lL~ 167 (241)
+..++ ..++..+.+.+.
T Consensus 278 m~~~p---~~~~~l~~~wl~ 294 (375)
T 4auk_A 278 MVEKP---AKVAALMAQWLV 294 (375)
T ss_dssp CSSCH---HHHHHHHHHHHH
T ss_pred CCCCh---HHhHHHHHHHHh
Confidence 65544 344444555554
|
| >2oo3_A Protein involved in catabolism of external DNA; structural genomics, unknown function, PSI-2, protein structure initiative; 2.00A {Legionella pneumophila subsp} SCOP: c.66.1.59 | Back alignment and structure |
|---|
Probab=97.77 E-value=1.1e-05 Score=68.83 Aligned_cols=121 Identities=8% Similarity=0.023 Sum_probs=84.8
Q ss_pred HHHHHHhccCCCCCCeEEEecCCCCHHHHHHHHhCCEEEEEcCCCcHHHHHHHHHHHHHcCCceEEEEeecCCCCcC--c
Q 026274 58 LAEYVWQQRYRFSGANVVELGAGTSLPGLVAAKVGSNVTLTDDSNRIEVLKNMRRVCEMNKLNCRVMGLTWGFLDAS--I 135 (241)
Q Consensus 58 L~~~l~~~~~~~~~~~VLElGcGtGl~sl~la~~g~~V~~tD~~~~~~~l~~~~~n~~~n~~~~~~~~l~w~~~~~~--~ 135 (241)
|..|+..-.. +.+..+||+-+|||.+|+.+.+.+.+++++|.++ +.++.+++|++. ..++++...|....... .
T Consensus 80 l~~yf~~l~~-~n~~~~LDlfaGSGaLgiEaLS~~d~~vfvE~~~--~a~~~L~~Nl~~-~~~~~V~~~D~~~~L~~l~~ 155 (283)
T 2oo3_A 80 FLEYISVIKQ-INLNSTLSYYPGSPYFAINQLRSQDRLYLCELHP--TEYNFLLKLPHF-NKKVYVNHTDGVSKLNALLP 155 (283)
T ss_dssp GHHHHHHHHH-HSSSSSCCEEECHHHHHHHHSCTTSEEEEECCSH--HHHHHHTTSCCT-TSCEEEECSCHHHHHHHHCS
T ss_pred HHHHHHHHHH-hcCCCceeEeCCcHHHHHHHcCCCCeEEEEeCCH--HHHHHHHHHhCc-CCcEEEEeCcHHHHHHHhcC
Confidence 3445433222 4667899999999999999999667999999995 699999998875 34466665553221111 1
Q ss_pred CCCCCcEEEEcCCcCC-CccHHHHHHHHHHHhhcCCCeEEEEEeeccCc
Q 026274 136 FDLNPNIILGADVFYD-ASAFDDLFATITYLLQSSPGSVFITTYHNRSG 183 (241)
Q Consensus 136 ~~~~fDlIl~~dvly~-~~~~~~ll~~~~~lL~~~~~~~~~~~~~~r~~ 183 (241)
...+||+|+. |+-|. ....+.+++.+.+..+..++|++++=|+....
T Consensus 156 ~~~~fdLVfi-DPPYe~k~~~~~vl~~L~~~~~r~~~Gi~v~WYPi~~~ 203 (283)
T 2oo3_A 156 PPEKRGLIFI-DPSYERKEEYKEIPYAIKNAYSKFSTGLYCVWYPVVNK 203 (283)
T ss_dssp CTTSCEEEEE-CCCCCSTTHHHHHHHHHHHHHHHCTTSEEEEEEEESSH
T ss_pred CCCCccEEEE-CCCCCCCcHHHHHHHHHHHhCccCCCeEEEEEEeccch
Confidence 1246999996 55555 57899999999887777788877666655443
|
| >3eld_A Methyltransferase; flavivirus, RNA capping, guanylyltransfer viral enzyme structure; HET: SFG; 1.90A {Wesselsbron virus} PDB: 3elu_A* 3elw_A* 3ely_A* 3emb_A* 3emd_A* | Back alignment and structure |
|---|
Probab=97.72 E-value=0.00083 Score=57.42 Aligned_cols=127 Identities=12% Similarity=-0.043 Sum_probs=77.4
Q ss_pred CcceEEeccHHHHHHHHHhccCCCCCCeEEEecCCCCHHHHHHHHh-CC-EEEEEcCCCcHHHHHHHHHHHHHcCCceEE
Q 026274 46 EYGLFVWPCSVILAEYVWQQRYRFSGANVVELGAGTSLPGLVAAKV-GS-NVTLTDDSNRIEVLKNMRRVCEMNKLNCRV 123 (241)
Q Consensus 46 ~~g~~~W~~s~~L~~~l~~~~~~~~~~~VLElGcGtGl~sl~la~~-g~-~V~~tD~~~~~~~l~~~~~n~~~n~~~~~~ 123 (241)
.+|...=.+++.|.+...+ ....++++||||||++|-++..+++. ++ .|+++|+... +...... ....+.++.
T Consensus 58 ~~g~yrSRaa~KL~ei~ek-~l~~~g~~vlDLGaaPGgWsqva~~~~gv~sV~Gvdlg~~--~~~~P~~-~~~~~~~iv- 132 (300)
T 3eld_A 58 DVGISVSRGAAKIRWLHER-GYLRITGRVLDLGCGRGGWSYYAAAQKEVMSVKGYTLGIE--GHEKPIH-MQTLGWNIV- 132 (300)
T ss_dssp SSCCCSSTTHHHHHHHHHH-TSCCCCEEEEEETCTTCHHHHHHHTSTTEEEEEEECCCCT--TSCCCCC-CCBTTGGGE-
T ss_pred cCCCccchHHHHHHHHHHh-CCCCCCCEEEEcCCCCCHHHHHHHHhcCCceeeeEEeccc--ccccccc-ccccCCceE-
Confidence 4566677899999999888 55557889999999999999999975 55 7999999741 1000000 000011221
Q ss_pred EEeecCCCCcCcCCCCCcEEEEcCCcCCCcc-------HHHHHHHHHHHhhcCCCeEEEEEeec
Q 026274 124 MGLTWGFLDASIFDLNPNIILGADVFYDASA-------FDDLFATITYLLQSSPGSVFITTYHN 180 (241)
Q Consensus 124 ~~l~w~~~~~~~~~~~fDlIl~~dvly~~~~-------~~~ll~~~~~lL~~~~~~~~~~~~~~ 180 (241)
.+.-+.........++|+|++ |.-.+... ...|++.....|++++ |.|++-.-.
T Consensus 133 -~~~~~~di~~l~~~~~DlVls-D~APnsG~~~~D~~rs~~LL~~A~~~LkpG~-G~FV~KvF~ 193 (300)
T 3eld_A 133 -KFKDKSNVFTMPTEPSDTLLC-DIGESSSNPLVERDRTMKVLENFERWKHVNT-ENFCVKVLA 193 (300)
T ss_dssp -EEECSCCTTTSCCCCCSEEEE-CCCCCCSSHHHHHHHHHHHHHHHHHHCCTTC-CEEEEEESS
T ss_pred -EeecCceeeecCCCCcCEEee-cCcCCCCCHHHHHHHHHHHHHHHHHHhcCCC-CcEEEEecc
Confidence 111111111223458999997 66655322 1356788889998443 666665433
|
| >3b5i_A S-adenosyl-L-methionine:salicylic acid carboxyl methyltransferase-like protein; sabath family, indole-3-acetic acid, S-AD methionine; HET: SAH; 2.75A {Arabidopsis thaliana} | Back alignment and structure |
|---|
Probab=97.53 E-value=0.00047 Score=61.17 Aligned_cols=109 Identities=9% Similarity=0.038 Sum_probs=68.3
Q ss_pred CCeEEEecCCCCHHHHHHHHh------------C-----CEEEEEcCCCcHHHHHHHHHHHHHc-------------CCc
Q 026274 71 GANVVELGAGTSLPGLVAAKV------------G-----SNVTLTDDSNRIEVLKNMRRVCEMN-------------KLN 120 (241)
Q Consensus 71 ~~~VLElGcGtGl~sl~la~~------------g-----~~V~~tD~~~~~~~l~~~~~n~~~n-------------~~~ 120 (241)
..+|+|||||+|-.++.+... | .+|+..|+..+ -...+=+++... +..
T Consensus 53 ~~~IaDlGCssG~Nt~~~v~~ii~~i~~~~~~~~~~~pe~~v~~nDLp~N--DFn~lF~~L~~~~~~~~~~~~~~~~~~~ 130 (374)
T 3b5i_A 53 PFTAVDLGCSSGANTVHIIDFIVKHISKRFDAAGIDPPEFTAFFSDLPSN--DFNTLFQLLPPLVSNTCMEECLAADGNR 130 (374)
T ss_dssp CEEEEEETCCSSHHHHHHHHHHHHHHHHHHHHTTCCCCCEEEEEEECTTS--CHHHHHHHSCCBCCCC--CCC---CCCB
T ss_pred ceEEEecCCCCChhHHHHHHHHHHHHHHHHhhcCCCCCceeEEecCCCcc--chHHHHhhhhhhhhhcchhhhccccCCC
Confidence 468999999999888876221 1 38999999875 222222222211 001
Q ss_pred eEEEEeecCCCCcCc-CCCCCcEEEEcCCcCCCc--------------------------------------cHHHHHHH
Q 026274 121 CRVMGLTWGFLDASI-FDLNPNIILGADVFYDAS--------------------------------------AFDDLFAT 161 (241)
Q Consensus 121 ~~~~~l~w~~~~~~~-~~~~fDlIl~~dvly~~~--------------------------------------~~~~ll~~ 161 (241)
-.+....-+.+...+ ++.++|+|+++-++++.. ++..+++.
T Consensus 131 ~~f~~gvpgSFy~rlfP~~S~d~v~Ss~aLHWls~~p~~l~~~~~~~~nkg~i~~~~~~~~v~~ay~~Qf~~D~~~fL~~ 210 (374)
T 3b5i_A 131 SYFVAGVPGSFYRRLFPARTIDFFHSAFSLHWLSQVPESVTDRRSAAYNRGRVFIHGAGEKTTTAYKRQFQADLAEFLRA 210 (374)
T ss_dssp CSEEEEEESCTTSCCSCTTCEEEEEEESCTTBCSSCCGGGGCTTSTTCCTTTSSSSSCCHHHHHHHHHHHHHHHHHHHHH
T ss_pred ceEEEecChhhhcccCCCcceEEEEecceeeeeccCchhhhccccccccCCceEeCCCCHHHHHHHHHHHHHHHHHHHHH
Confidence 123333334433333 356999999999999965 34456888
Q ss_pred HHHHhhcCCCeEEEEEeeccCc
Q 026274 162 ITYLLQSSPGSVFITTYHNRSG 183 (241)
Q Consensus 162 ~~~lL~~~~~~~~~~~~~~r~~ 183 (241)
..+.|+ |||.+++....|..
T Consensus 211 ra~eL~--pGG~mvl~~~gr~~ 230 (374)
T 3b5i_A 211 RAAEVK--RGGAMFLVCLGRTS 230 (374)
T ss_dssp HHHHEE--EEEEEEEEEEECCC
T ss_pred HHHHhC--CCCEEEEEEecCCC
Confidence 899998 67777766655543
|
| >1g60_A Adenine-specific methyltransferase MBOIIA; structural genomics, DNA methylation, S- adenosylmethionine, PSI, protein structure initiative; HET: SAM; 1.74A {Moraxella bovis} SCOP: c.66.1.11 | Back alignment and structure |
|---|
Probab=97.53 E-value=0.00023 Score=59.79 Aligned_cols=60 Identities=20% Similarity=0.167 Sum_probs=46.4
Q ss_pred HHHHHHHhccCCCCCCeEEEecCCCCHHHHHHHHhCCEEEEEcCCCcHHHHHHHHHHHHHcCC
Q 026274 57 ILAEYVWQQRYRFSGANVVELGAGTSLPGLVAAKVGSNVTLTDDSNRIEVLKNMRRVCEMNKL 119 (241)
Q Consensus 57 ~L~~~l~~~~~~~~~~~VLElGcGtGl~sl~la~~g~~V~~tD~~~~~~~l~~~~~n~~~n~~ 119 (241)
.|.+.+..... .+|..|||..||+|..++++.++|.+++++|+++ .+++.++++++.+++
T Consensus 200 ~l~~~~i~~~~-~~~~~vlD~f~GsGtt~~~a~~~gr~~ig~e~~~--~~~~~~~~r~~~~~~ 259 (260)
T 1g60_A 200 DLIERIIRASS-NPNDLVLDCFMGSGTTAIVAKKLGRNFIGCDMNA--EYVNQANFVLNQLEI 259 (260)
T ss_dssp HHHHHHHHHHC-CTTCEEEESSCTTCHHHHHHHHTTCEEEEEESCH--HHHHHHHHHHHC---
T ss_pred HHHHHHHHHhC-CCCCEEEECCCCCCHHHHHHHHcCCeEEEEeCCH--HHHHHHHHHHHhccC
Confidence 34444433222 4678999999999999999999999999999995 699999999887654
|
| >2wk1_A NOVP; transferase, O-methyltransferase, novobiocin, TYLF superfamily; HET: SAH; 1.40A {Streptomyces caeruleus} | Back alignment and structure |
|---|
Probab=97.51 E-value=0.00031 Score=59.96 Aligned_cols=125 Identities=11% Similarity=0.017 Sum_probs=80.1
Q ss_pred CCCeEEEecCCCCHHHHHHHHh-------CCEEEEEcCCCc------------H------------HHHHHHHHHHHHcC
Q 026274 70 SGANVVELGAGTSLPGLVAAKV-------GSNVTLTDDSNR------------I------------EVLKNMRRVCEMNK 118 (241)
Q Consensus 70 ~~~~VLElGcGtGl~sl~la~~-------g~~V~~tD~~~~------------~------------~~l~~~~~n~~~n~ 118 (241)
...+|||+|+..|..++.+|.. +.+|+++|..+. . ..++.+++|++..+
T Consensus 106 ~pg~IlEiGv~~G~Sai~ma~~l~~~g~~~~kI~~~DtfeG~pe~~~~~~~~d~~~~~~~~~~~~~~~~~~ar~n~~~~g 185 (282)
T 2wk1_A 106 VPGDLVETGVWRGGACILMRGILRAHDVRDRTVWVADSFQGIPDVGEDGYAGDRKMALHRRNSVLAVSEEEVRRNFRNYD 185 (282)
T ss_dssp CCCEEEEECCTTSHHHHHHHHHHHHTTCCSCCEEEEECSSCSCCCCTTSCHHHHHHCGGGGHHHHCCCHHHHHHHHHHTT
T ss_pred CCCcEEEeecCchHHHHHHHHHhHhcCCCCCEEEEEECCCCCCcccccccccccccccccccccchhHHHHHHHHHHHcC
Confidence 4568999999999988887763 458999996421 0 13567889998877
Q ss_pred C---ceEEEEeecCCCCcCcCCCCCcEEEEcCCcCCCccHHHHHHHHHHHhhcCCCeEEEEEeeccCc--hhHHHHHHHH
Q 026274 119 L---NCRVMGLTWGFLDASIFDLNPNIILGADVFYDASAFDDLFATITYLLQSSPGSVFITTYHNRSG--HHLIEFLMVK 193 (241)
Q Consensus 119 ~---~~~~~~l~w~~~~~~~~~~~fDlIl~~dvly~~~~~~~ll~~~~~lL~~~~~~~~~~~~~~r~~--~~~~~~~~~~ 193 (241)
+ ++++...+..+........+||+|..---.| ......++.+..+|+ +||++++....... ...+..++++
T Consensus 186 l~~~~I~li~Gda~etL~~~~~~~~d~vfIDaD~y--~~~~~~Le~~~p~L~--pGGiIv~DD~~~~~G~~~Av~Ef~~~ 261 (282)
T 2wk1_A 186 LLDEQVRFLPGWFKDTLPTAPIDTLAVLRMDGDLY--ESTWDTLTNLYPKVS--VGGYVIVDDYMMCPPCKDAVDEYRAK 261 (282)
T ss_dssp CCSTTEEEEESCHHHHSTTCCCCCEEEEEECCCSH--HHHHHHHHHHGGGEE--EEEEEEESSCTTCHHHHHHHHHHHHH
T ss_pred CCcCceEEEEeCHHHHHhhCCCCCEEEEEEcCCcc--ccHHHHHHHHHhhcC--CCEEEEEcCCCCCHHHHHHHHHHHHh
Confidence 5 4777766655443333346899998532122 123456777777887 78888876432111 2344556677
Q ss_pred cCCEE
Q 026274 194 WGLKC 198 (241)
Q Consensus 194 ~g~~~ 198 (241)
.|+..
T Consensus 262 ~~i~~ 266 (282)
T 2wk1_A 262 FDIAD 266 (282)
T ss_dssp TTCCS
T ss_pred cCCce
Confidence 77554
|
| >3o4f_A Spermidine synthase; aminopropyltransferase, polyamine synthase, rossmann fold, P biosynthesis, spermidine biosynthesis, transferase; 2.90A {Escherichia coli} | Back alignment and structure |
|---|
Probab=97.51 E-value=0.0006 Score=58.49 Aligned_cols=103 Identities=12% Similarity=0.148 Sum_probs=72.6
Q ss_pred CCCeEEEecCCCCHHHHHHHHh-C-CEEEEEcCCCcHHHHHHHHHHHH------HcCCceEEEEeecCCCCcCcCCCCCc
Q 026274 70 SGANVVELGAGTSLPGLVAAKV-G-SNVTLTDDSNRIEVLKNMRRVCE------MNKLNCRVMGLTWGFLDASIFDLNPN 141 (241)
Q Consensus 70 ~~~~VLElGcGtGl~sl~la~~-g-~~V~~tD~~~~~~~l~~~~~n~~------~n~~~~~~~~l~w~~~~~~~~~~~fD 141 (241)
+.++||=||-|.|.+.-.+.+. + .+|+++|+++ ++++.+++-.. .+..++++...|...+... ...+||
T Consensus 83 ~pk~VLIiGgGdG~~~revlk~~~v~~v~~VEID~--~Vv~~a~~~lp~~~~~~~~dpRv~v~~~Dg~~~l~~-~~~~yD 159 (294)
T 3o4f_A 83 HAKHVLIIGGGDGAMLREVTRHKNVESITMVEIDA--GVVSFCRQYLPNHNAGSYDDPRFKLVIDDGVNFVNQ-TSQTFD 159 (294)
T ss_dssp CCCEEEEESCTTSHHHHHHHTCTTCCEEEEEESCH--HHHHHHHHHCHHHHTTGGGCTTEEEEESCTTTTTSC-SSCCEE
T ss_pred CCCeEEEECCCchHHHHHHHHcCCcceEEEEcCCH--HHHHHHHhcCccccccccCCCcEEEEechHHHHHhh-ccccCC
Confidence 4579999999999888888876 3 4899999995 79998887542 2244677777676655433 346899
Q ss_pred EEEE--cCCcCCCc--cHHHHHHHHHHHhhcCCCeEEEEE
Q 026274 142 IILG--ADVFYDAS--AFDDLFATITYLLQSSPGSVFITT 177 (241)
Q Consensus 142 lIl~--~dvly~~~--~~~~ll~~~~~lL~~~~~~~~~~~ 177 (241)
+|+. .|...-.. .-..+++.+++.|+ ++|++..-
T Consensus 160 vIi~D~~dp~~~~~~L~t~eFy~~~~~~L~--p~Gv~v~q 197 (294)
T 3o4f_A 160 VIISDCTDPIGPGESLFTSAFYEGCKRCLN--PGGIFVAQ 197 (294)
T ss_dssp EEEESCCCCCCTTCCSSCCHHHHHHHHTEE--EEEEEEEE
T ss_pred EEEEeCCCcCCCchhhcCHHHHHHHHHHhC--CCCEEEEe
Confidence 9994 23322111 23578899999998 67776654
|
| >3lkz_A Non-structural protein 5; flavivirus, methyltransferase, inhibitor, P nucleotide-binding, RNA replication, viral protein; HET: SFG; 2.00A {West nile virus} | Back alignment and structure |
|---|
Probab=97.35 E-value=0.0038 Score=53.36 Aligned_cols=142 Identities=15% Similarity=0.059 Sum_probs=82.2
Q ss_pred CCcceEEeccHHHHHHHHHhccCCCCCCeEEEecCCCCHHHHHHHHh-CC-EEEEEcCCCc----HHHHHHHHHHHHHcC
Q 026274 45 EEYGLFVWPCSVILAEYVWQQRYRFSGANVVELGAGTSLPGLVAAKV-GS-NVTLTDDSNR----IEVLKNMRRVCEMNK 118 (241)
Q Consensus 45 ~~~g~~~W~~s~~L~~~l~~~~~~~~~~~VLElGcGtGl~sl~la~~-g~-~V~~tD~~~~----~~~l~~~~~n~~~n~ 118 (241)
..+|..+=.+++.|.+...+ .....+.+||||||++|-++.+++.. |+ +|.+.|+-.. |.+.+.+ +
T Consensus 70 ~~~g~y~SR~~~KL~ei~~~-~~l~~~~~VlDLGaapGGwsq~~~~~~gv~~V~avdvG~~~he~P~~~~ql-------~ 141 (321)
T 3lkz_A 70 VTGGHPVSRGTAKLRWLVER-RFLEPVGKVIDLGCGRGGWCYYMATQKRVQEVRGYTKGGPGHEEPQLVQSY-------G 141 (321)
T ss_dssp CSSCCCSSTHHHHHHHHHHT-TSCCCCEEEEEETCTTCHHHHHHTTCTTEEEEEEECCCSTTSCCCCCCCBT-------T
T ss_pred CcCCCccchHHHHHHHHHHh-cCCCCCCEEEEeCCCCCcHHHHHHhhcCCCEEEEEEcCCCCccCcchhhhc-------C
Confidence 35677777899999887777 44456779999999999999977764 66 6999999862 0000000 0
Q ss_pred Cc-eEEEEe-ecCCCCcCcCCCCCcEEEEcCCcCCCccHH-------HHHHHHHHHhhcCCCeEEEEEeeccCchhH---
Q 026274 119 LN-CRVMGL-TWGFLDASIFDLNPNIILGADVFYDASAFD-------DLFATITYLLQSSPGSVFITTYHNRSGHHL--- 186 (241)
Q Consensus 119 ~~-~~~~~l-~w~~~~~~~~~~~fDlIl~~dvly~~~~~~-------~ll~~~~~lL~~~~~~~~~~~~~~r~~~~~--- 186 (241)
-+ +.+... |. ......++|+|++ |+=...++.. ..++.+...|+++|+.. ++-.-+-+....
T Consensus 142 w~lV~~~~~~Dv----~~l~~~~~D~ivc-DigeSs~~~~ve~~Rtl~vLel~~~wL~~~~~~f-~~KVl~pY~~~v~e~ 215 (321)
T 3lkz_A 142 WNIVTMKSGVDV----FYRPSECCDTLLC-DIGESSSSAEVEEHRTIRVLEMVEDWLHRGPREF-CVKVLCPYMPKVIEK 215 (321)
T ss_dssp GGGEEEECSCCT----TSSCCCCCSEEEE-CCCCCCSCHHHHHHHHHHHHHHHHHHHTTCCCEE-EEEESCTTSHHHHHH
T ss_pred CcceEEEeccCH----hhCCCCCCCEEEE-ECccCCCChhhhhhHHHHHHHHHHHHhccCCCcE-EEEEcCCCChHHHHH
Confidence 01 222211 11 1222357999885 5554433211 15566678888776643 333333322333
Q ss_pred HHHHHHHcCCEEEE
Q 026274 187 IEFLMVKWGLKCVK 200 (241)
Q Consensus 187 ~~~~~~~~g~~~~~ 200 (241)
++.+..++|=-.+.
T Consensus 216 l~~lq~~fgg~lvr 229 (321)
T 3lkz_A 216 MELLQRRYGGGLVR 229 (321)
T ss_dssp HHHHHHHHCCEEEC
T ss_pred HHHHHHHhCCEeEe
Confidence 34455667644433
|
| >1wg8_A Predicted S-adenosylmethionine-dependent methyltransferase; S-adenosyl-methyltransferase, MRAW; HET: SAM; 2.00A {Thermus thermophilus} SCOP: a.60.13.1 c.66.1.23 | Back alignment and structure |
|---|
Probab=97.28 E-value=0.00036 Score=59.43 Aligned_cols=73 Identities=15% Similarity=0.057 Sum_probs=52.4
Q ss_pred CCCCCeEEEecCCCCHHHHHHHHhCCEEEEEcCCCcHHHHHHHHHHHHHcCCceEEEEeecCCCCcC---cCCCCCcEEE
Q 026274 68 RFSGANVVELGAGTSLPGLVAAKVGSNVTLTDDSNRIEVLKNMRRVCEMNKLNCRVMGLTWGFLDAS---IFDLNPNIIL 144 (241)
Q Consensus 68 ~~~~~~VLElGcGtGl~sl~la~~g~~V~~tD~~~~~~~l~~~~~n~~~n~~~~~~~~l~w~~~~~~---~~~~~fDlIl 144 (241)
...+..+||.+||.|--+..+++.+.+|+++|.++ ++++.+++ ... .++.+...++.+.... ....++|.|+
T Consensus 20 ~~~gg~~VD~T~G~GGHS~~il~~~g~VigiD~Dp--~Ai~~A~~-L~~--~rv~lv~~~f~~l~~~L~~~g~~~vDgIL 94 (285)
T 1wg8_A 20 VRPGGVYVDATLGGAGHARGILERGGRVIGLDQDP--EAVARAKG-LHL--PGLTVVQGNFRHLKRHLAALGVERVDGIL 94 (285)
T ss_dssp CCTTCEEEETTCTTSHHHHHHHHTTCEEEEEESCH--HHHHHHHH-TCC--TTEEEEESCGGGHHHHHHHTTCSCEEEEE
T ss_pred CCCCCEEEEeCCCCcHHHHHHHHCCCEEEEEeCCH--HHHHHHHh-hcc--CCEEEEECCcchHHHHHHHcCCCCcCEEE
Confidence 34677999999999999999999877999999995 79998887 543 3566666555543211 1113577776
Q ss_pred E
Q 026274 145 G 145 (241)
Q Consensus 145 ~ 145 (241)
+
T Consensus 95 ~ 95 (285)
T 1wg8_A 95 A 95 (285)
T ss_dssp E
T ss_pred e
Confidence 4
|
| >4fzv_A Putative methyltransferase NSUN4; mterf fold, methyltransferase fold, rRNA methyltransferase, mitochondria, transferase; HET: MSE SAM; 2.00A {Homo sapiens} PDB: 4fp9_A* | Back alignment and structure |
|---|
Probab=97.26 E-value=0.0027 Score=55.97 Aligned_cols=131 Identities=15% Similarity=0.089 Sum_probs=82.6
Q ss_pred ccHHHHHHHHHhccCCCCCCeEEEecCCCCHHHHHHHHhCC--EEEEEcCCCcHHHHHHHHHHHHHcCC-------ceEE
Q 026274 53 PCSVILAEYVWQQRYRFSGANVVELGAGTSLPGLVAAKVGS--NVTLTDDSNRIEVLKNMRRVCEMNKL-------NCRV 123 (241)
Q Consensus 53 ~~s~~L~~~l~~~~~~~~~~~VLElGcGtGl~sl~la~~g~--~V~~tD~~~~~~~l~~~~~n~~~n~~-------~~~~ 123 (241)
.+|.+.+..|. ...|.+|||+.||.|-=++.++..+. .|++.|+++ .-++.+++|++..+. ++.+
T Consensus 135 ~aS~l~~~~L~----~~pg~~VLD~CAaPGGKT~~la~~~~~~~l~A~D~~~--~R~~~l~~~l~r~~~~~~~~~~~v~v 208 (359)
T 4fzv_A 135 AASLLPVLALG----LQPGDIVLDLCAAPGGKTLALLQTGCCRNLAANDLSP--SRIARLQKILHSYVPEEIRDGNQVRV 208 (359)
T ss_dssp GGGHHHHHHHC----CCTTEEEEESSCTTCHHHHHHHHTTCEEEEEEECSCH--HHHHHHHHHHHHHSCTTTTTSSSEEE
T ss_pred HHHHHHHHHhC----CCCCCEEEEecCCccHHHHHHHHhcCCCcEEEEcCCH--HHHHHHHHHHHHhhhhhhccCCceEE
Confidence 67776666653 34678999999999988888888765 799999995 578888888876653 3455
Q ss_pred EEeecCCCCcCcCCCCCcEEEEcCC-------cCC-Cc----------------cHHHHHHHHHHHhhcCCCe-EEEEEe
Q 026274 124 MGLTWGFLDASIFDLNPNIILGADV-------FYD-AS----------------AFDDLFATITYLLQSSPGS-VFITTY 178 (241)
Q Consensus 124 ~~l~w~~~~~~~~~~~fDlIl~~dv-------ly~-~~----------------~~~~ll~~~~~lL~~~~~~-~~~~~~ 178 (241)
...|..... .....+||.|+.--+ +.. .+ ....+++...++|+ ||| ++|..+
T Consensus 209 ~~~D~~~~~-~~~~~~fD~VLlDaPCSg~g~g~~r~~~~~~~~~~~~~~~~l~~lQ~~iL~~a~~~lk--pGG~LVYsTC 285 (359)
T 4fzv_A 209 TSWDGRKWG-ELEGDTYDRVLVDVPCTTDRHSLHEEENNIFKRSRKKERQILPVLQVQLLAAGLLATK--PGGHVVYSTC 285 (359)
T ss_dssp ECCCGGGHH-HHSTTCEEEEEEECCCCCHHHHTTCCTTCTTSGGGHHHHHTHHHHHHHHHHHHHHTEE--EEEEEEEEES
T ss_pred EeCchhhcc-hhccccCCEEEECCccCCCCCcccccChhhhhhCCHHHHHHHHHHHHHHHHHHHhcCC--CCcEEEEEeC
Confidence 444433221 123458999984221 111 10 12456777778887 444 455443
Q ss_pred --eccCchhHHHHHHH
Q 026274 179 --HNRSGHHLIEFLMV 192 (241)
Q Consensus 179 --~~r~~~~~~~~~~~ 192 (241)
........+..+++
T Consensus 286 Sl~~~ENE~vV~~~L~ 301 (359)
T 4fzv_A 286 SLSHLQNEYVVQGAIE 301 (359)
T ss_dssp CCCTTTTHHHHHHHHH
T ss_pred CCchhhCHHHHHHHHH
Confidence 33444455555543
|
| >3ufb_A Type I restriction-modification system methyltran subunit; methyltransferase activity, transferase; 1.80A {Vibrio vulnificus} | Back alignment and structure |
|---|
Probab=97.24 E-value=0.023 Score=52.55 Aligned_cols=139 Identities=12% Similarity=0.009 Sum_probs=81.9
Q ss_pred HHHHHHhccCCCCCCeEEEecCCCCHHHHHHHHh---------------CCEEEEEcCCCcHHHHHHHHHHHHHcCCceE
Q 026274 58 LAEYVWQQRYRFSGANVVELGAGTSLPGLVAAKV---------------GSNVTLTDDSNRIEVLKNMRRVCEMNKLNCR 122 (241)
Q Consensus 58 L~~~l~~~~~~~~~~~VLElGcGtGl~sl~la~~---------------g~~V~~tD~~~~~~~l~~~~~n~~~n~~~~~ 122 (241)
+++++........+.+|+|-.||||-+-+.+.+. ...+.|.|+++ .+...++.|...++....
T Consensus 205 Vv~lmv~l~~p~~~~~I~DPacGsGgfL~~a~~~l~~~~~~~~~~~~~~~~~i~G~E~~~--~~~~la~mNl~lhg~~~~ 282 (530)
T 3ufb_A 205 VVRFMVEVMDPQLGESVLDPACGTGGFLVEAFEHLERQCKTVEDREVLQESSIFGGEAKS--LPYLLVQMNLLLHGLEYP 282 (530)
T ss_dssp HHHHHHHHHCCCTTCCEEETTCTTTHHHHHHHHHHHTTCCSHHHHHHHHTCCEEEECCSH--HHHHHHHHHHHHHTCSCC
T ss_pred HHHHHHHhhccCCCCEEEeCCCCcchHHHHHHHHHHHhccchhHHHHHhhhhhhhhhccH--HHHHHHHHHHHhcCCccc
Confidence 3444444334456779999999999666555432 23699999995 688899999988887532
Q ss_pred EEEeecCCCCc-C----cCCCCCcEEEEcCCcCCCc----------------cHHHHHHHHHHHhhc-------CCCeEE
Q 026274 123 VMGLTWGFLDA-S----IFDLNPNIILGADVFYDAS----------------AFDDLFATITYLLQS-------SPGSVF 174 (241)
Q Consensus 123 ~~~l~w~~~~~-~----~~~~~fDlIl~~dvly~~~----------------~~~~ll~~~~~lL~~-------~~~~~~ 174 (241)
.+.+++... + ....+||+|++++++-... ..-.++.-+.+.|++ +|...+
T Consensus 283 --~I~~~dtL~~~~~~~~~~~~fD~Il~NPPf~~~~~~~~~~~~~~~~~~~~~~~~Fl~~~l~~Lk~~~~~l~~gGr~av 360 (530)
T 3ufb_A 283 --RIDPENSLRFPLREMGDKDRVDVILTNPPFGGEEEKGILGNFPEDMQTAETAMLFLQLIMRKLKRPGHGSDNGGRAAV 360 (530)
T ss_dssp --EEECSCTTCSCGGGCCGGGCBSEEEECCCSSCBCCHHHHTTSCGGGCCCBHHHHHHHHHHHHBCCTTSSSSSCCEEEE
T ss_pred --cccccccccCchhhhcccccceEEEecCCCCccccccccccCchhcccchhHHHHHHHHHHHhhhhhhccCCCceEEE
Confidence 233444322 1 1124799999999873211 112344555566653 333456
Q ss_pred EEEee--ccCc-h-hHHHHHHHHcCCEEEE
Q 026274 175 ITTYH--NRSG-H-HLIEFLMVKWGLKCVK 200 (241)
Q Consensus 175 ~~~~~--~r~~-~-~~~~~~~~~~g~~~~~ 200 (241)
+++.. .+.. . ...+.++++..+....
T Consensus 361 VlP~g~Lf~~~~~~~iRk~Lle~~~l~aII 390 (530)
T 3ufb_A 361 VVPNGTLFSDGISARIKEELLKNFNLHTIV 390 (530)
T ss_dssp EEEHHHHHCCTHHHHHHHHHHHHSEEEEEE
T ss_pred EecchhhhccchHHHHHHHHhhcCEEEEEE
Confidence 66532 1332 2 3445666766554443
|
| >2efj_A 3,7-dimethylxanthine methyltransferase; SAM-dependant methyltransferase, SAH, theobromine; HET: SAH 37T; 2.00A {Coffea canephora} PDB: 2eg5_A* | Back alignment and structure |
|---|
Probab=97.16 E-value=0.0017 Score=57.69 Aligned_cols=112 Identities=14% Similarity=0.139 Sum_probs=68.7
Q ss_pred CCeEEEecCCCCHHHHHHHHh--------------C-----CEEEEEcCCCc-H-HHHHHH---HHHHHH-cC--CceEE
Q 026274 71 GANVVELGAGTSLPGLVAAKV--------------G-----SNVTLTDDSNR-I-EVLKNM---RRVCEM-NK--LNCRV 123 (241)
Q Consensus 71 ~~~VLElGcGtGl~sl~la~~--------------g-----~~V~~tD~~~~-~-~~l~~~---~~n~~~-n~--~~~~~ 123 (241)
..+|+|||||+|-.++.+... + .+|+..|+..+ - .+...+ .+.... ++ ....+
T Consensus 53 ~~~IaDlGCssG~NT~~~v~~ii~~i~~~~~~~~~~~~~pe~~v~~nDLp~NDFN~lF~~L~~~~~~~~~~~g~~~~~~f 132 (384)
T 2efj_A 53 CFKVGDLGCASGPNTFSTVRDIVQSIDKVGQEKKNELERPTIQIFLNDLFQNDFNSVFKLLPSFYRNLEKENGRKIGSCL 132 (384)
T ss_dssp EEEEEEETCCSSHHHHHHHHHHHHHHTCC----------CEEEEEEECCTTSCHHHHHHHHHHHHHHHHHHTCCCTTSEE
T ss_pred ceEEEecCCCCCchHHHHHHHHHHHHHHHhhhcccCCCCCceEEEecCCCccchHHHHhhhhhhHhhhhhhccCCCCceE
Confidence 467999999999888877665 1 27999998853 1 122222 222212 22 12234
Q ss_pred EEeecCCCCcCcC-CCCCcEEEEcCCcCCCccHH---------------------------------------HHHHHHH
Q 026274 124 MGLTWGFLDASIF-DLNPNIILGADVFYDASAFD---------------------------------------DLFATIT 163 (241)
Q Consensus 124 ~~l~w~~~~~~~~-~~~fDlIl~~dvly~~~~~~---------------------------------------~ll~~~~ 163 (241)
....-+.+...++ +.++|+|+++-++++....+ .+++...
T Consensus 133 ~~gvpgSFy~rlfp~~S~d~v~Ss~aLHWls~~p~~l~~~~s~~~nkg~i~i~~~sp~~v~~ay~~Qf~~D~~~FL~~Ra 212 (384)
T 2efj_A 133 IGAMPGSFYSRLFPEESMHFLHSCYCLHWLSQVPSGLVTELGISVNKGCIYSSKASRPPIQKAYLDQFTKDFTTFLRIHS 212 (384)
T ss_dssp EEECCSCTTSCCSCTTCEEEEEEESCTTBCSSSCCC------CCCCTTCSSSCTTSCHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred EEecchhhhhccCCCCceEEEEecceeeecCCCchhhhccccccccCCceEecCCCCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4444455444333 46899999999999854322 1256668
Q ss_pred HHhhcCCCeEEEEEeeccCch
Q 026274 164 YLLQSSPGSVFITTYHNRSGH 184 (241)
Q Consensus 164 ~lL~~~~~~~~~~~~~~r~~~ 184 (241)
+.|+ |||.+++..-.|...
T Consensus 213 ~eL~--pGG~mvl~~~gr~~~ 231 (384)
T 2efj_A 213 EELI--SRGRMLLTFICKEDE 231 (384)
T ss_dssp HHEE--EEEEEEEEEECCCTT
T ss_pred HHhc--cCCeEEEEEecCCCc
Confidence 8888 677777776665543
|
| >3g7u_A Cytosine-specific methyltransferase; DNA-binding, NAD-binding, structural GENO protein structure initiative, PSI; 1.75A {Escherichia coli O157} | Back alignment and structure |
|---|
Probab=96.98 E-value=0.013 Score=51.94 Aligned_cols=73 Identities=19% Similarity=0.158 Sum_probs=51.4
Q ss_pred CeEEEecCCCCHHHHHHHHhCCE-EEEEcCCCcHHHHHHHHHHHHHcCCceEEEEeecCCCCcC-c-----CCCCCcEEE
Q 026274 72 ANVVELGAGTSLPGLVAAKVGSN-VTLTDDSNRIEVLKNMRRVCEMNKLNCRVMGLTWGFLDAS-I-----FDLNPNIIL 144 (241)
Q Consensus 72 ~~VLElGcGtGl~sl~la~~g~~-V~~tD~~~~~~~l~~~~~n~~~n~~~~~~~~l~w~~~~~~-~-----~~~~fDlIl 144 (241)
.++|||-||+|-+++.+.+.|++ |.++|+++ .+++..+.|.. ...+...|..+.... . ....+|+|+
T Consensus 3 ~~vidLFsG~GGlslG~~~aG~~~v~avE~d~--~a~~t~~~N~~----~~~~~~~DI~~~~~~~~~~~~~~~~~~D~i~ 76 (376)
T 3g7u_A 3 LNVIDLFSGVGGLSLGAARAGFDVKMAVEIDQ--HAINTHAINFP----RSLHVQEDVSLLNAEIIKGFFKNDMPIDGII 76 (376)
T ss_dssp CEEEEETCTTSHHHHHHHHHTCEEEEEECSCH--HHHHHHHHHCT----TSEEECCCGGGCCHHHHHHHHCSCCCCCEEE
T ss_pred CeEEEEccCcCHHHHHHHHCCCcEEEEEeCCH--HHHHHHHHhCC----CCceEecChhhcCHHHHHhhcccCCCeeEEE
Confidence 47999999999999999999995 67999995 57776666643 334444444433211 1 134799999
Q ss_pred EcCCcC
Q 026274 145 GADVFY 150 (241)
Q Consensus 145 ~~dvly 150 (241)
+..+.-
T Consensus 77 ggpPCQ 82 (376)
T 3g7u_A 77 GGPPCQ 82 (376)
T ss_dssp ECCCCC
T ss_pred ecCCCC
Confidence 987753
|
| >1g55_A DNA cytosine methyltransferase DNMT2; human DNA methyltransferase homologue; HET: DNA SAH; 1.80A {Homo sapiens} SCOP: c.66.1.26 | Back alignment and structure |
|---|
Probab=96.86 E-value=0.015 Score=50.73 Aligned_cols=123 Identities=15% Similarity=0.118 Sum_probs=69.3
Q ss_pred CeEEEecCCCCHHHHHHHHhC--C-EEEEEcCCCcHHHHHHHHHHHHHcCCceEEEEeecCCCCcCcCC-CCCcEEEEcC
Q 026274 72 ANVVELGAGTSLPGLVAAKVG--S-NVTLTDDSNRIEVLKNMRRVCEMNKLNCRVMGLTWGFLDASIFD-LNPNIILGAD 147 (241)
Q Consensus 72 ~~VLElGcGtGl~sl~la~~g--~-~V~~tD~~~~~~~l~~~~~n~~~n~~~~~~~~l~w~~~~~~~~~-~~fDlIl~~d 147 (241)
.+||||.||+|-+++.+.+.| + .|+++|+++ .+++..+.|... ..+...|..+....... ..+|+|+++.
T Consensus 3 ~~v~dLFaG~Gg~~~g~~~~G~~~~~v~~~E~d~--~a~~~~~~N~~~----~~~~~~Di~~~~~~~~~~~~~D~l~~gp 76 (343)
T 1g55_A 3 LRVLELYSGVGGMHHALRESCIPAQVVAAIDVNT--VANEVYKYNFPH----TQLLAKTIEGITLEEFDRLSFDMILMSP 76 (343)
T ss_dssp EEEEEETCTTCHHHHHHHHHTCSEEEEEEECCCH--HHHHHHHHHCTT----SCEECSCGGGCCHHHHHHHCCSEEEECC
T ss_pred CeEEEeCcCccHHHHHHHHCCCCceEEEEEeCCH--HHHHHHHHhccc----cccccCCHHHccHhHcCcCCcCEEEEcC
Confidence 479999999999999999998 4 599999995 588877777642 22233333332211111 1689999987
Q ss_pred CcCCC---------cc-HHHHHHHHHHHhhc-C--CCeEEEEEeecc----CchhHHHHHHHHcCCEEEEE
Q 026274 148 VFYDA---------SA-FDDLFATITYLLQS-S--PGSVFITTYHNR----SGHHLIEFLMVKWGLKCVKL 201 (241)
Q Consensus 148 vly~~---------~~-~~~ll~~~~~lL~~-~--~~~~~~~~~~~r----~~~~~~~~~~~~~g~~~~~i 201 (241)
+.-.. .+ -..|+..+.++++. . |..+++ .--.. .....+...+++.|+.+...
T Consensus 77 PCq~fS~ag~~~g~~d~r~~l~~~~~~~i~~~~~~P~~~~~-ENV~~l~~~~~~~~i~~~l~~~GY~v~~~ 146 (343)
T 1g55_A 77 PCQPFTRIGRQGDMTDSRTNSFLHILDILPRLQKLPKYILL-ENVKGFEVSSTRDLLIQTIENCGFQYQEF 146 (343)
T ss_dssp C------------------CHHHHHHHHGGGCSSCCSEEEE-EEETTGGGSHHHHHHHHHHHHTTEEEEEE
T ss_pred CCcchhhcCCcCCccCccchHHHHHHHHHHHhcCCCCEEEE-eCCccccCHHHHHHHHHHHHHCCCeeEEE
Confidence 74221 11 11244444455543 2 444444 32111 11222333457889988663
|
| >2px2_A Genome polyprotein [contains: capsid protein C (core protein); envelope protein M...; methyltransferase, SAH; HET: SAH; 2.00A {Murray valley encephalitis virus} PDB: 2px4_A* 2px5_A* 2pxa_A* 2pxc_A* 2px8_A* 2oy0_A* | Back alignment and structure |
|---|
Probab=96.79 E-value=0.0039 Score=52.28 Aligned_cols=134 Identities=16% Similarity=0.072 Sum_probs=75.4
Q ss_pred CcceEEeccHHHHHHHHHhccCCCCCCeEEEecCCCCHHHHHHHHh--C----CEEEEEc--CCCcHHHHHHHHHHHHHc
Q 026274 46 EYGLFVWPCSVILAEYVWQQRYRFSGANVVELGAGTSLPGLVAAKV--G----SNVTLTD--DSNRIEVLKNMRRVCEMN 117 (241)
Q Consensus 46 ~~g~~~W~~s~~L~~~l~~~~~~~~~~~VLElGcGtGl~sl~la~~--g----~~V~~tD--~~~~~~~l~~~~~n~~~n 117 (241)
++|...=.+++.|.+.-.+. ...++.+||||||+.|-++.++++. - ..|++.| +.+ +.. ...
T Consensus 50 ~~g~yRSRAayKL~EIdeK~-likpg~~VVDLGaAPGGWSQvAa~~~~vg~V~G~vig~D~~~~P---~~~------~~~ 119 (269)
T 2px2_A 50 VGGHPVSRGTAKLRWLVERR-FVQPIGKVVDLGCGRGGWSYYAATMKNVQEVRGYTKGGPGHEEP---MLM------QSY 119 (269)
T ss_dssp CCSCCSSTHHHHHHHHHHTT-SCCCCEEEEEETCTTSHHHHHHTTSTTEEEEEEECCCSTTSCCC---CCC------CST
T ss_pred cCCCcccHHHHHHHHHHHcC-CCCCCCEEEEcCCCCCHHHHHHhhhcCCCCceeEEEccccccCC---Ccc------cCC
Confidence 45666678999997777774 4446889999999999999999987 2 2455555 222 000 001
Q ss_pred CCce-EEEEe-ecCCCCcCcCCCCCcEEEEcCCcCCCc--------cHHHHHHHHHHHhhcCCCeEEEEEeeccCchhHH
Q 026274 118 KLNC-RVMGL-TWGFLDASIFDLNPNIILGADVFYDAS--------AFDDLFATITYLLQSSPGSVFITTYHNRSGHHLI 187 (241)
Q Consensus 118 ~~~~-~~~~l-~w~~~~~~~~~~~fDlIl~~dvly~~~--------~~~~ll~~~~~lL~~~~~~~~~~~~~~r~~~~~~ 187 (241)
+.++ .+.+. |..+ ....++|+|++ |.-.+.. .+. .++...+.|+++++ .|++-.-.-......
T Consensus 120 Gv~~i~~~~G~Df~~----~~~~~~DvVLS-DMAPnSG~~~vD~~Rs~~-aL~~A~~~Lk~gG~-~FvvKVFqg~~~~~~ 192 (269)
T 2px2_A 120 GWNIVTMKSGVDVFY----KPSEISDTLLC-DIGESSPSAEIEEQRTLR-ILEMVSDWLSRGPK-EFCIKILCPYMPKVI 192 (269)
T ss_dssp TGGGEEEECSCCGGG----SCCCCCSEEEE-CCCCCCSCHHHHHHHHHH-HHHHHHHHHTTCCS-EEEEEESCTTSHHHH
T ss_pred CceEEEeeccCCccC----CCCCCCCEEEe-CCCCCCCccHHHHHHHHH-HHHHHHHHhhcCCc-EEEEEECCCCchHHH
Confidence 2221 22222 4432 22357999994 4433321 122 56777788985432 455443332223333
Q ss_pred H---HHHHHcCC
Q 026274 188 E---FLMVKWGL 196 (241)
Q Consensus 188 ~---~~~~~~g~ 196 (241)
+ .+...++-
T Consensus 193 ~~l~~lk~~F~~ 204 (269)
T 2px2_A 193 EKLESLQRRFGG 204 (269)
T ss_dssp HHHHHHHHHHCC
T ss_pred HHHHHHHHHcCC
Confidence 3 34455554
|
| >1m6e_X S-adenosyl-L-methionnine:salicylic acid carboxyl methyltransferase; rossmann fold, protein-small molecule complex; HET: SAH SAL; 3.00A {Clarkia breweri} SCOP: c.66.1.35 | Back alignment and structure |
|---|
Probab=96.69 E-value=0.0016 Score=57.44 Aligned_cols=109 Identities=15% Similarity=0.133 Sum_probs=68.4
Q ss_pred CCeEEEecCCCCHHHHHHHHh------------C------CEEEEEcCCCcHHHHHHHHHHHHHc--CCceEEEEeecCC
Q 026274 71 GANVVELGAGTSLPGLVAAKV------------G------SNVTLTDDSNRIEVLKNMRRVCEMN--KLNCRVMGLTWGF 130 (241)
Q Consensus 71 ~~~VLElGcGtGl~sl~la~~------------g------~~V~~tD~~~~~~~l~~~~~n~~~n--~~~~~~~~l~w~~ 130 (241)
.-+|+||||++|-.++.+... + .+|++.|+..+ ....+-+++... .....+....-+.
T Consensus 52 ~~~IaDlGCs~G~Nt~~~v~~ii~~i~~~~~~~~~~~~pe~~v~~nDLp~N--DFntlF~~L~~~~~~~~~~f~~gvpgS 129 (359)
T 1m6e_X 52 RLAIADLGCSSGPNALFAVTELIKTVEELRKKMGRENSPEYQIFLNDLPGN--DFNAIFRSLPIENDVDGVCFINGVPGS 129 (359)
T ss_dssp EECCEEESCCSSTTTTTGGGTTHHHHHHHHHSSSCSSCCEEEEEEEECTTS--CHHHHHTTTTTSCSCTTCEEEEEEESC
T ss_pred ceEEEecCCCCCcchHHHHHHHHHHHHHHHHhcCCCCCCceEEEecCCCch--HHHHHHHhcchhcccCCCEEEEecchh
Confidence 357999999999777665443 2 27999999975 554444443320 0012333344455
Q ss_pred CCcCcC-CCCCcEEEEcCCcCCCcc---------------------------------HHHHHHHHHHHhhcCCCeEEEE
Q 026274 131 LDASIF-DLNPNIILGADVFYDASA---------------------------------FDDLFATITYLLQSSPGSVFIT 176 (241)
Q Consensus 131 ~~~~~~-~~~fDlIl~~dvly~~~~---------------------------------~~~ll~~~~~lL~~~~~~~~~~ 176 (241)
+...++ +.++|+|+++-++++... +..+++...+-|+ |||.+++
T Consensus 130 Fy~rlfp~~S~d~v~Ss~aLHWls~~p~~l~~nkg~i~~~~~~p~~v~~ay~~Qf~~D~~~FL~~Ra~EL~--pGG~mvl 207 (359)
T 1m6e_X 130 FYGRLFPRNTLHFIHSSYSLMWLSQVPIGIESNKGNIYMANTCPQSVLNAYYKQFQEDHALFLRCRAQEVV--PGGRMVL 207 (359)
T ss_dssp SSSCCSCTTCBSCEEEESCTTBCSSCCSCCCCCTTTTSSCSSSCCTTSCCSHHHHHHHHHHHHHHHHHHBC--TTCEEEE
T ss_pred hhhccCCCCceEEEEehhhhhhcccCchhhhccCCceEecCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhc--CCceEEE
Confidence 443333 468999999999988432 2345888899998 6666665
Q ss_pred EeeccCc
Q 026274 177 TYHNRSG 183 (241)
Q Consensus 177 ~~~~r~~ 183 (241)
..-.|..
T Consensus 208 ~~~gr~~ 214 (359)
T 1m6e_X 208 TILGRRS 214 (359)
T ss_dssp EEEECSS
T ss_pred EEecCCC
Confidence 5544433
|
| >3r24_A NSP16, 2'-O-methyl transferase; methyltransferase, zinc-finger, transferase, viral protein; HET: SAM; 2.00A {Sars coronavirus} | Back alignment and structure |
|---|
Probab=96.58 E-value=0.13 Score=43.97 Aligned_cols=124 Identities=15% Similarity=0.077 Sum_probs=70.6
Q ss_pred HHHHHHHhc-cCCCCCCeEEEecCC----CCHHHHHHHHh---CCEEEEEcCCCcHHHHHHHHHHHHHcCCceEEEEeec
Q 026274 57 ILAEYVWQQ-RYRFSGANVVELGAG----TSLPGLVAAKV---GSNVTLTDDSNRIEVLKNMRRVCEMNKLNCRVMGLTW 128 (241)
Q Consensus 57 ~L~~~l~~~-~~~~~~~~VLElGcG----tGl~sl~la~~---g~~V~~tD~~~~~~~l~~~~~n~~~n~~~~~~~~l~w 128 (241)
.|.+||... .-...+.+||||||| +.=-|..+++. |+.|++.|+.+- .. ... .+.+.|.
T Consensus 95 qlcqyl~~~~~~vp~gmrVLDLGA~s~kg~APGS~VLr~~~p~g~~VVavDL~~~---~s---------da~-~~IqGD~ 161 (344)
T 3r24_A 95 QLCQYLNTLTLAVPYNMRVIHFGAGSDKGVAPGTAVLRQWLPTGTLLVDSDLNDF---VS---------DAD-STLIGDC 161 (344)
T ss_dssp HHHHHHTTSCCCCCTTCEEEEESCCCTTSBCHHHHHHHHHSCTTCEEEEEESSCC---BC---------SSS-EEEESCG
T ss_pred HHHHHhccccEeecCCCEEEeCCCCCCCCCCCcHHHHHHhCCCCcEEEEeeCccc---cc---------CCC-eEEEccc
Confidence 355666432 233468899999984 22223444444 458999999973 10 112 2345553
Q ss_pred CCCCcCcCCCCCcEEEEcCCcCC------------CccHHHHHHHHHHHhhcCCCeEEEEEeeccCchhHHHHHHHHcCC
Q 026274 129 GFLDASIFDLNPNIILGADVFYD------------ASAFDDLFATITYLLQSSPGSVFITTYHNRSGHHLIEFLMVKWGL 196 (241)
Q Consensus 129 ~~~~~~~~~~~fDlIl~~dvly~------------~~~~~~ll~~~~~lL~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~ 196 (241)
.. .....+||+|++ |.--+ ....+.+++.+.+.|+ +||.|++-.-.-...+.+..+.+ .|
T Consensus 162 ~~---~~~~~k~DLVIS-DMAPNtTG~~D~d~~Rs~~L~ElALdfA~~~Lk--pGGsFvVKVFQGsg~~~L~~lrk--~F 233 (344)
T 3r24_A 162 AT---VHTANKWDLIIS-DMYDPRTKHVTKENDSKEGFFTYLCGFIKQKLA--LGGSIAVKITEHSWNADLYKLMG--HF 233 (344)
T ss_dssp GG---EEESSCEEEEEE-CCCCTTSCSSCSCCCCCCTHHHHHHHHHHHHEE--EEEEEEEEECSSSCCHHHHHHHT--TE
T ss_pred cc---cccCCCCCEEEe-cCCCCcCCccccchhHHHHHHHHHHHHHHHhCc--CCCEEEEEEecCCCHHHHHHHHh--hC
Confidence 32 122368999984 32222 1257778888999998 56666665444334443444433 67
Q ss_pred EEEEE
Q 026274 197 KCVKL 201 (241)
Q Consensus 197 ~~~~i 201 (241)
+.+.+
T Consensus 234 ~~VK~ 238 (344)
T 3r24_A 234 SWWTA 238 (344)
T ss_dssp EEEEE
T ss_pred CeEEE
Confidence 66665
|
| >2c7p_A Modification methylase HHAI; DNA methyltransferase, methyltransferase, base flipping, restriction system, transferase; HET: 5CM A1P SAH EPE CIT; 1.7A {Haemophilus haemolyticus} SCOP: c.66.1.26 PDB: 10mh_A* 1m0e_A* 1mht_A* 1hmy_A* 1skm_A* 2c7o_A* 2c7q_A* 2hmy_B* 2hr1_A* 3eeo_A* 3mht_A* 4mht_A* 5mht_A* 6mht_A* 7mht_A* 8mht_A* 9mht_A* 2zcj_A* 2z6u_A* 2z6q_A* ... | Back alignment and structure |
|---|
Probab=96.56 E-value=0.0082 Score=52.13 Aligned_cols=73 Identities=11% Similarity=0.004 Sum_probs=51.6
Q ss_pred CCCCeEEEecCCCCHHHHHHHHhCC-EEEEEcCCCcHHHHHHHHHHHHHcCCceEEEEeecCCCCcCcCCCCCcEEEEcC
Q 026274 69 FSGANVVELGAGTSLPGLVAAKVGS-NVTLTDDSNRIEVLKNMRRVCEMNKLNCRVMGLTWGFLDASIFDLNPNIILGAD 147 (241)
Q Consensus 69 ~~~~~VLElGcGtGl~sl~la~~g~-~V~~tD~~~~~~~l~~~~~n~~~n~~~~~~~~l~w~~~~~~~~~~~fDlIl~~d 147 (241)
..+.+++||.||+|-+++.+.+.|+ .|.++|+++ .+++..+.|..... ..|..+...... ..+|+|+++.
T Consensus 9 ~~~~~~~dLFaG~Gg~~~g~~~aG~~~v~~~e~d~--~a~~t~~~N~~~~~------~~Di~~~~~~~~-~~~D~l~~gp 79 (327)
T 2c7p_A 9 LTGLRFIDLFAGLGGFRLALESCGAECVYSNEWDK--YAQEVYEMNFGEKP------EGDITQVNEKTI-PDHDILCAGF 79 (327)
T ss_dssp TTTCEEEEETCTTTHHHHHHHHTTCEEEEEECCCH--HHHHHHHHHHSCCC------BSCGGGSCGGGS-CCCSEEEEEC
T ss_pred cCCCcEEEECCCcCHHHHHHHHCCCeEEEEEeCCH--HHHHHHHHHcCCCC------cCCHHHcCHhhC-CCCCEEEECC
Confidence 3567899999999999999999999 488899995 68888888864221 122222211111 2589999887
Q ss_pred CcC
Q 026274 148 VFY 150 (241)
Q Consensus 148 vly 150 (241)
+.-
T Consensus 80 PCQ 82 (327)
T 2c7p_A 80 PCQ 82 (327)
T ss_dssp CCT
T ss_pred CCC
Confidence 653
|
| >2vz8_A Fatty acid synthase; transferase, phosphopantetheine, multienzyme, megasynthase, fatty acid synthesis; 3.2A {Sus scrofa} PDB: 2vz9_A* | Back alignment and structure |
|---|
Probab=96.28 E-value=0.002 Score=69.51 Aligned_cols=99 Identities=15% Similarity=0.117 Sum_probs=43.2
Q ss_pred CCCeEEEecCCCCHHHH-HHHHhC------CEEEEEcCCCcHHHHHHHHHHHHHcCCceEEEEeecCCCCc-CcCCCCCc
Q 026274 70 SGANVVELGAGTSLPGL-VAAKVG------SNVTLTDDSNRIEVLKNMRRVCEMNKLNCRVMGLTWGFLDA-SIFDLNPN 141 (241)
Q Consensus 70 ~~~~VLElGcGtGl~sl-~la~~g------~~V~~tD~~~~~~~l~~~~~n~~~n~~~~~~~~l~w~~~~~-~~~~~~fD 141 (241)
...+|||+|+|||-... .+...+ .+++.||+++ ...+.+++..+. +++. .-.|..... ......||
T Consensus 1240 ~~~~ilEigagtg~~t~~il~~l~~~~~~~~~yt~td~s~--~~~~~a~~~f~~--~di~--~~~~d~~~~~~~~~~~yd 1313 (2512)
T 2vz8_A 1240 PKMKVVEVLAGDGQLYSRIPALLNTQPVMDLDYTATDRNP--QALEAAQAKLEQ--LHVT--QGQWDPANPAPGSLGKAD 1313 (2512)
T ss_dssp SEEEEEEESCSSSCCTTTHHHHTTTSSSCEEEEEEECSSS--SSTTTTTTTHHH--HTEE--EECCCSSCCCC-----CC
T ss_pred CCceEEEECCCccHHHHHHHHhhcccCcccceEEEecCCh--HHHHHHHHHhhh--cccc--cccccccccccCCCCcee
Confidence 34589999999994322 222222 2799999996 355555554432 1222 222322111 11234799
Q ss_pred EEEEcCCcCCCccHHHHHHHHHHHhhcCCCeEEEE
Q 026274 142 IILGADVFYDASAFDDLFATITYLLQSSPGSVFIT 176 (241)
Q Consensus 142 lIl~~dvly~~~~~~~ll~~~~~lL~~~~~~~~~~ 176 (241)
+|+++++++...+....++.++++|+ |+|.+++
T Consensus 1314 lvia~~vl~~t~~~~~~l~~~~~lL~--p~G~l~~ 1346 (2512)
T 2vz8_A 1314 LLVCNCALATLGDPAVAVGNMAATLK--EGGFLLL 1346 (2512)
T ss_dssp EEEEECC----------------------CCEEEE
T ss_pred EEEEcccccccccHHHHHHHHHHhcC--CCcEEEE
Confidence 99999999988889999999999998 4454443
|
| >3c6k_A Spermine synthase; spermidine aminopropyltransferase, SPMSY, structural genomics, structural genomics consortium, SGC, phosphoprotein; HET: SPD MTA; 1.95A {Homo sapiens} PDB: 3c6m_A* | Back alignment and structure |
|---|
Probab=96.26 E-value=0.0059 Score=54.06 Aligned_cols=103 Identities=12% Similarity=0.055 Sum_probs=65.1
Q ss_pred CCCeEEEecCCCCHHHHHHHHhCC-EEEEEcCCCcHHHHHHHHHHHHH-c-----C---CceEEEEeecCCCCcC--cCC
Q 026274 70 SGANVVELGAGTSLPGLVAAKVGS-NVTLTDDSNRIEVLKNMRRVCEM-N-----K---LNCRVMGLTWGFLDAS--IFD 137 (241)
Q Consensus 70 ~~~~VLElGcGtGl~sl~la~~g~-~V~~tD~~~~~~~l~~~~~n~~~-n-----~---~~~~~~~l~w~~~~~~--~~~ 137 (241)
+.++||=||.|.|.....+.+... +|+++|+++ ++++.+++-... + . .++++...|...+... ...
T Consensus 205 ~pkrVLIIGgGdG~~~revlkh~~~~V~~VEIDp--~VVe~ar~yfp~~~~~~~d~pr~~rv~vii~Da~~fl~~~~~~~ 282 (381)
T 3c6k_A 205 TGKDVLILGGGDGGILCEIVKLKPKMVTMVEIDQ--MVIDGCKKYMRKTCGDVLDNLKGDCYQVLIEDCIPVLKRYAKEG 282 (381)
T ss_dssp TTCEEEEEECTTCHHHHHHHTTCCSEEEEEESCH--HHHHHHHHHCCC----CCSSSEETTEEEEESCHHHHHHHHHHHT
T ss_pred CCCeEEEECCCcHHHHHHHHhcCCceeEEEccCH--HHHHHHHhhchhhhhhhhccccccceeeehHHHHHHHHhhhhcc
Confidence 468999999999988888877644 899999995 799988875321 1 1 1234443333222111 123
Q ss_pred CCCcEEEEcCCcC---C-----C---ccHHHHHHHHHHHhhcCCCeEEEEE
Q 026274 138 LNPNIILGADVFY---D-----A---SAFDDLFATITYLLQSSPGSVFITT 177 (241)
Q Consensus 138 ~~fDlIl~~dvly---~-----~---~~~~~ll~~~~~lL~~~~~~~~~~~ 177 (241)
.+||+|+.- +.- . + -.-+.+++.+++.|+ ++|+++.-
T Consensus 283 ~~yDvIIvD-l~D~~~s~~p~g~a~~Lft~eFy~~~~~~L~--p~GVlv~Q 330 (381)
T 3c6k_A 283 REFDYVIND-LTAVPISTSPEEDSTWEFLRLILDLSMKVLK--QDGKYFTQ 330 (381)
T ss_dssp CCEEEEEEE-CCSSCCCCC----CHHHHHHHHHHHHHHTEE--EEEEEEEE
T ss_pred CceeEEEEC-CCCCcccCcccCcchHHHHHHHHHHHHHhcC--CCCEEEEe
Confidence 479999953 221 1 0 113567788899998 67877653
|
| >1i4w_A Mitochondrial replication protein MTF1; mitochondrial transcription factor, transcription initiation; 2.60A {Saccharomyces cerevisiae} SCOP: c.66.1.24 | Back alignment and structure |
|---|
Probab=96.00 E-value=0.014 Score=51.30 Aligned_cols=55 Identities=11% Similarity=0.116 Sum_probs=42.3
Q ss_pred CCCeEEEecCCCCHHHHHHHHh--CCEEEEEcCCCcHHHHHHHHHHHHHcCCceEEEEeec
Q 026274 70 SGANVVELGAGTSLPGLVAAKV--GSNVTLTDDSNRIEVLKNMRRVCEMNKLNCRVMGLTW 128 (241)
Q Consensus 70 ~~~~VLElGcGtGl~sl~la~~--g~~V~~tD~~~~~~~l~~~~~n~~~n~~~~~~~~l~w 128 (241)
.+..|||+|.|.|.++..++.. +.+|+++++++ .+++.+++... ..++++...|.
T Consensus 58 ~~~~VlEIGPG~G~LT~~Ll~~~~~~~vvavE~D~--~l~~~L~~~~~--~~~l~ii~~D~ 114 (353)
T 1i4w_A 58 EELKVLDLYPGVGIQSAIFYNKYCPRQYSLLEKRS--SLYKFLNAKFE--GSPLQILKRDP 114 (353)
T ss_dssp TTCEEEEESCTTCHHHHHHHHHHCCSEEEEECCCH--HHHHHHHHHTT--TSSCEEECSCT
T ss_pred CCCEEEEECCCCCHHHHHHHhhCCCCEEEEEecCH--HHHHHHHHhcc--CCCEEEEECCc
Confidence 3578999999999999999986 45999999995 68888887652 33455554443
|
| >3p8z_A Mtase, non-structural protein 5; methyltransferase, RNA, ER, transferase-transferase inhibito; HET: 36A SAH; 1.70A {Dengue virus 3} SCOP: c.66.1.25 PDB: 3p97_A* 2xbm_A* 3evg_A* | Back alignment and structure |
|---|
Probab=95.97 E-value=0.01 Score=49.24 Aligned_cols=55 Identities=18% Similarity=0.079 Sum_probs=44.6
Q ss_pred cceEEeccHHHHHHHHHhccCCCCCCeEEEecCCCCHHHHHHHHh-CC-EEEEEcCCC
Q 026274 47 YGLFVWPCSVILAEYVWQQRYRFSGANVVELGAGTSLPGLVAAKV-GS-NVTLTDDSN 102 (241)
Q Consensus 47 ~g~~~W~~s~~L~~~l~~~~~~~~~~~VLElGcGtGl~sl~la~~-g~-~V~~tD~~~ 102 (241)
.|..+=.+++.|.+...+. ....+.+||||||++|-++.+++.. |+ +|.+.|+-.
T Consensus 56 ~g~yrSRa~~KL~ei~ek~-~l~~g~~VvDLGaapGGWSq~~a~~~g~~~V~avdvG~ 112 (267)
T 3p8z_A 56 THHAVSRGSAKLQWFVERN-MVIPEGRVIDLGCGRGGWSYYCAGLKKVTEVRGYTKGG 112 (267)
T ss_dssp SSCCSSTHHHHHHHHHHTT-SSCCCEEEEEESCTTSHHHHHHHTSTTEEEEEEECCCS
T ss_pred CCCccchHHHHHHHHHHhc-CCCCCCEEEEcCCCCCcHHHHHHHhcCCCEEEEEecCC
Confidence 3666667899998877776 4557779999999999999977765 66 799999986
|
| >3qv2_A 5-cytosine DNA methyltransferase; DNMT2, ehmeth; HET: SAH; 2.15A {Entamoeba histolytica} | Back alignment and structure |
|---|
Probab=95.96 E-value=0.079 Score=45.89 Aligned_cols=123 Identities=13% Similarity=-0.037 Sum_probs=73.2
Q ss_pred CCeEEEecCCCCHHHHHHHHhCC--E-E-EEEcCCCcHHHHHHHHHHHHHcCCceEEEEeecCCCCcC-cCCCCCcEEEE
Q 026274 71 GANVVELGAGTSLPGLVAAKVGS--N-V-TLTDDSNRIEVLKNMRRVCEMNKLNCRVMGLTWGFLDAS-IFDLNPNIILG 145 (241)
Q Consensus 71 ~~~VLElGcGtGl~sl~la~~g~--~-V-~~tD~~~~~~~l~~~~~n~~~n~~~~~~~~l~w~~~~~~-~~~~~fDlIl~ 145 (241)
..+++||-||.|-+++.+.+.|. + | .++|+++ .+.+..+.|.... +...|..+.... .....+|++++
T Consensus 10 ~~~vidLFaG~GG~~~G~~~aG~~~~~v~~a~e~d~--~a~~ty~~N~~~~-----~~~~DI~~~~~~~i~~~~~Dil~g 82 (327)
T 3qv2_A 10 QVNVIEFFSGIGGLRSSYERSSININATFIPFDINE--IANKIYSKNFKEE-----VQVKNLDSISIKQIESLNCNTWFM 82 (327)
T ss_dssp CEEEEEETCTTTHHHHHHHHSSCCCCEEEEEECCCH--HHHHHHHHHHCCC-----CBCCCTTTCCHHHHHHTCCCEEEE
T ss_pred CCEEEEECCChhHHHHHHHHcCCCceEEEEEEECCH--HHHHHHHHHCCCC-----cccCChhhcCHHHhccCCCCEEEe
Confidence 34899999999999999999883 4 5 6999995 5777777776422 112233222111 11126899998
Q ss_pred cCCcCCC-----------ccH-HHHHHHHHH-HhhcC---CCeEEEEEeeccC----chhHHHHHHHHcCCEEEEE
Q 026274 146 ADVFYDA-----------SAF-DDLFATITY-LLQSS---PGSVFITTYHNRS----GHHLIEFLMVKWGLKCVKL 201 (241)
Q Consensus 146 ~dvly~~-----------~~~-~~ll~~~~~-lL~~~---~~~~~~~~~~~r~----~~~~~~~~~~~~g~~~~~i 201 (241)
+.+.-.. .+. ..|+..+.+ +++.- |. +|++..-..- ....+...+++.|+.+...
T Consensus 83 gpPCQ~fs~S~ag~~~~~~d~r~~L~~~~~r~~i~~~~~~P~-~~~lENV~gl~~~~~~~~i~~~l~~~GY~v~~~ 157 (327)
T 3qv2_A 83 SPPCQPYNNSIMSKHKDINDPRAKSVLHLYRDILPYLINKPK-HIFIENVPLFKESLVFKEIYNILIKNQYYIKDI 157 (327)
T ss_dssp CCCCTTCSHHHHTTTCTTTCGGGHHHHHHHHTTGGGCSSCCS-EEEEEECGGGGGSHHHHHHHHHHHHTTCEEEEE
T ss_pred cCCccCcccccCCCCCCCccccchhHHHHHHHHHHHhccCCC-EEEEEchhhhcChHHHHHHHHHHHhCCCEEEEE
Confidence 8775322 122 256666666 66542 44 4444432211 1222333457889988664
|
| >3vyw_A MNMC2; tRNA wobble uridine, modification enzyme, genetic CODE, 5- methylaminomethyl-2-thiouridine, methyltransferase; HET: SAM; 2.49A {Aquifex aeolicus} PDB: 2e58_A* | Back alignment and structure |
|---|
Probab=95.72 E-value=0.12 Score=44.32 Aligned_cols=138 Identities=12% Similarity=0.118 Sum_probs=73.7
Q ss_pred CeEEEecCCCCHHHHHHHH----hC--C--EEEEEcCCCc------HHHHHHHHHHHHH-----cCCceEEEEeecCCCC
Q 026274 72 ANVVELGAGTSLPGLVAAK----VG--S--NVTLTDDSNR------IEVLKNMRRVCEM-----NKLNCRVMGLTWGFLD 132 (241)
Q Consensus 72 ~~VLElGcGtGl~sl~la~----~g--~--~V~~tD~~~~------~~~l~~~~~n~~~-----n~~~~~~~~l~w~~~~ 132 (241)
-+|||+|=|||+..+...+ .+ . +++.++..+. ++.+..+.+.... .+.+++. .+-|++..
T Consensus 98 ~~IlE~GFGTGLNfl~t~~~~~~~~~~~~L~~iS~Ek~pl~~~~~~~~~~~~l~~~l~~~~p~~~~~~v~L-~l~~GDa~ 176 (308)
T 3vyw_A 98 IRILDVGFGLGYNLAVALKHLWEVNPKLRVEIISFEKELLKEFPILPEPYREIHEFLLERVPEYEGERLSL-KVLLGDAR 176 (308)
T ss_dssp EEEEEECCTTSHHHHHHHHHHHHHCTTCEEEEEEEESSCCSCCCCCCTTSHHHHHHHHHHCSEEECSSEEE-EEEESCHH
T ss_pred cEEEEeCCCccHHHHHHHHHHHHhCCCcceEEEeecHHHHHhhHhchHhHHHHHHHHHHhCccccCCcEEE-EEEechHH
Confidence 4799999999987655432 22 2 4666665320 0111222221111 1222322 34455432
Q ss_pred c---CcCCCCCcEEEEcCCcCCCcc----HHHHHHHHHHHhhcCCCeEEEEEeeccCchhHHHHHHHHcCCEEEEEecCC
Q 026274 133 A---SIFDLNPNIILGADVFYDASA----FDDLFATITYLLQSSPGSVFITTYHNRSGHHLIEFLMVKWGLKCVKLVDGF 205 (241)
Q Consensus 133 ~---~~~~~~fDlIl~~dvly~~~~----~~~ll~~~~~lL~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~i~~~~ 205 (241)
. ...+.++|+|+. |.+--..+ -+.+++.+.++++ +||. +++|.. ...+..-+.+.||.+..+.
T Consensus 177 ~~l~~l~~~~~Da~fl-DgFsP~kNPeLWs~e~f~~l~~~~~--pgg~-laTYta---ag~VRR~L~~aGF~V~k~~--- 246 (308)
T 3vyw_A 177 KRIKEVENFKADAVFH-DAFSPYKNPELWTLDFLSLIKERID--EKGY-WVSYSS---SLSVRKSLLTLGFKVGSSR--- 246 (308)
T ss_dssp HHGGGCCSCCEEEEEE-CCSCTTTSGGGGSHHHHHHHHTTEE--EEEE-EEESCC---CHHHHHHHHHTTCEEEEEE---
T ss_pred HHHhhhcccceeEEEe-CCCCcccCcccCCHHHHHHHHHHhC--CCcE-EEEEeC---cHHHHHHHHHCCCEEEecC---
Confidence 2 222347898885 44321222 3689999999998 5554 445544 2346777889999999872
Q ss_pred CCCCcccccccCCCeEEEEEEecc
Q 026274 206 SFLPHYKARELNGNIQLAEIVLNH 229 (241)
Q Consensus 206 ~~~p~~~~~~~~~~~~l~~i~~~~ 229 (241)
+...+++++.=+...
T Consensus 247 ---------G~g~KReml~A~~~~ 261 (308)
T 3vyw_A 247 ---------EIGRKRKGTVASLKA 261 (308)
T ss_dssp ---------CC---CEEEEEESSS
T ss_pred ---------CCCCCCceeEEecCC
Confidence 344455666555443
|
| >3ubt_Y Modification methylase HAEIII; protein-DNA complex, DNA cytosine-5 methyltransferase, DNA B S-adenosyl methionine binding; HET: ATP 2PE; 2.50A {Haemophilus aegyptius} PDB: 1dct_A* | Back alignment and structure |
|---|
Probab=95.65 E-value=0.23 Score=42.47 Aligned_cols=70 Identities=14% Similarity=0.138 Sum_probs=48.7
Q ss_pred CeEEEecCCCCHHHHHHHHhCCE-EEEEcCCCcHHHHHHHHHHHHHcCCceEEEEeecCCCCcCcCCCCCcEEEEcCCc
Q 026274 72 ANVVELGAGTSLPGLVAAKVGSN-VTLTDDSNRIEVLKNMRRVCEMNKLNCRVMGLTWGFLDASIFDLNPNIILGADVF 149 (241)
Q Consensus 72 ~~VLElGcGtGl~sl~la~~g~~-V~~tD~~~~~~~l~~~~~n~~~n~~~~~~~~l~w~~~~~~~~~~~fDlIl~~dvl 149 (241)
.+||||=||.|-+++.+.+.|.+ |.++|+++. +.+..+.|.. ..+...|..+...... ...|+|+++.+.
T Consensus 1 mkvidLFsG~GG~~~G~~~aG~~~v~a~e~d~~--a~~ty~~N~~-----~~~~~~DI~~i~~~~~-~~~D~l~ggpPC 71 (331)
T 3ubt_Y 1 MNLISLFSGAGGLDLGFQKAGFRIICANEYDKS--IWKTYESNHS-----AKLIKGDISKISSDEF-PKCDGIIGGPPS 71 (331)
T ss_dssp CEEEEESCTTCHHHHHHHHTTCEEEEEEECCTT--THHHHHHHCC-----SEEEESCGGGCCGGGS-CCCSEEECCCCG
T ss_pred CeEEEeCcCccHHHHHHHHCCCEEEEEEeCCHH--HHHHHHHHCC-----CCcccCChhhCCHhhC-CcccEEEecCCC
Confidence 37999999999999999999985 779999974 6666666542 1333444443322212 368999988765
|
| >4dcm_A Ribosomal RNA large subunit methyltransferase G; 23S rRNA (guanine1835-N2)-methyltransferase; HET: SAM; 2.30A {Escherichia coli} | Back alignment and structure |
|---|
Probab=95.13 E-value=0.52 Score=41.34 Aligned_cols=137 Identities=17% Similarity=0.077 Sum_probs=84.2
Q ss_pred CCcceEEeccHHHHHHHHHhccCC-CCCCeEEEecCCCCHHHHHHHHhCCEEEEEcCCCcHHHHHHHHHHHHHcCCceE-
Q 026274 45 EEYGLFVWPCSVILAEYVWQQRYR-FSGANVVELGAGTSLPGLVAAKVGSNVTLTDDSNRIEVLKNMRRVCEMNKLNCR- 122 (241)
Q Consensus 45 ~~~g~~~W~~s~~L~~~l~~~~~~-~~~~~VLElGcGtGl~sl~la~~g~~V~~tD~~~~~~~l~~~~~n~~~n~~~~~- 122 (241)
..-.++.|+++- +||..+... ..+.+||-+|.+.|.++..++..+. ...+| | --....++.|+..|++...
T Consensus 15 ~~~~l~a~da~d---~~ll~~~~~~~~~~~~~~~~d~~gal~~~~~~~~~-~~~~d-s--~~~~~~~~~n~~~~~~~~~~ 87 (375)
T 4dcm_A 15 DVNPLQAWEAAD---EYLLQQLDDTEIRGPVLILNDAFGALSCALAEHKP-YSIGD-S--YISELATRENLRLNGIDESS 87 (375)
T ss_dssp SSCSCCSCCHHH---HHHHHTTTTCCCCSCEEEECCSSSHHHHHTGGGCC-EEEES-C--HHHHHHHHHHHHHTTCCGGG
T ss_pred CCCCCCccchHH---HHHHHhhhhccCCCCEEEECCCCCHHHHhhccCCc-eEEEh-H--HHHHHHHHHHHHHcCCCccc
Confidence 346688999886 344444222 2456899999999999988876543 23355 3 1344577889999998532
Q ss_pred EEEeecCCCCcCcCCCCCcEEEEcCCcCCCccHHHHHHHHHHHhhc-CCCeEEEEEeeccCchhHHHH-HHHHcCC
Q 026274 123 VMGLTWGFLDASIFDLNPNIILGADVFYDASAFDDLFATITYLLQS-SPGSVFITTYHNRSGHHLIEF-LMVKWGL 196 (241)
Q Consensus 123 ~~~l~w~~~~~~~~~~~fDlIl~~dvly~~~~~~~ll~~~~~lL~~-~~~~~~~~~~~~r~~~~~~~~-~~~~~g~ 196 (241)
+..++..+ .....||+|+. +.+.....+...+..++.. .+++.+++....+........ +.+..|.
T Consensus 88 ~~~~~~~~----~~~~~~~~v~~----~lpk~~~~l~~~L~~l~~~l~~~~~i~~~g~~~~~~~~~~~~l~~~~~~ 155 (375)
T 4dcm_A 88 VKFLDSTA----DYPQQPGVVLI----KVPKTLALLEQQLRALRKVVTSDTRIIAGAKARDIHTSTLELFEKVLGP 155 (375)
T ss_dssp SEEEETTS----CCCSSCSEEEE----ECCSCHHHHHHHHHHHHTTCCTTSEEEEEEEGGGCCHHHHHHHHHHTCC
T ss_pred eEeccccc----ccccCCCEEEE----EcCCCHHHHHHHHHHHHhhCCCCCEEEEEecccchHHHHHHHHHhhcCc
Confidence 33333322 12347999885 6677777766666666543 356677777666655443333 3333343
|
| >2py6_A Methyltransferase FKBM; YP_546752.1, structural genomics, JO center for structural genomics, JCSG, protein structure INI PSI-2; 2.15A {Methylobacillus flagellatus KT} SCOP: c.66.1.56 | Back alignment and structure |
|---|
Probab=94.90 E-value=0.086 Score=46.99 Aligned_cols=45 Identities=13% Similarity=0.096 Sum_probs=39.2
Q ss_pred CCCeEEEecCCCCHHHHHHH-HhC---CEEEEEcCCCcHHHHHHHHHHHHH
Q 026274 70 SGANVVELGAGTSLPGLVAA-KVG---SNVTLTDDSNRIEVLKNMRRVCEM 116 (241)
Q Consensus 70 ~~~~VLElGcGtGl~sl~la-~~g---~~V~~tD~~~~~~~l~~~~~n~~~ 116 (241)
++..|+|+||+.|..++.++ +.+ ++|++.+.++ ...+.+++|++.
T Consensus 226 ~~~~viDvGAn~G~~s~~~a~~~~~~~~~V~afEP~p--~~~~~L~~n~~~ 274 (409)
T 2py6_A 226 DSEKMVDCGASIGESLAGLIGVTKGKFERVWMIEPDR--INLQTLQNVLRR 274 (409)
T ss_dssp SSCEEEEETCTTSHHHHHHHHHHTSCCSEEEEECCCH--HHHHHHHHHHHH
T ss_pred CCCEEEECCCCcCHHHHHHHHHhcCCCCEEEEEcCCH--HHHHHHHHHHHh
Confidence 56789999999999999888 443 5899999995 799999999987
|
| >2qrv_A DNA (cytosine-5)-methyltransferase 3A; DNA methyltransferase 3A (DNMT3A) and ITS regulatory factor; HET: DNA SAH; 2.89A {Homo sapiens} | Back alignment and structure |
|---|
Probab=94.56 E-value=0.062 Score=45.92 Aligned_cols=74 Identities=9% Similarity=-0.002 Sum_probs=49.7
Q ss_pred CCCeEEEecCCCCHHHHHHHHhCCE---EEEEcCCCcHHHHHHHHHHHHHcCCceEEEEeecCCCCcCcCC--CCCcEEE
Q 026274 70 SGANVVELGAGTSLPGLVAAKVGSN---VTLTDDSNRIEVLKNMRRVCEMNKLNCRVMGLTWGFLDASIFD--LNPNIIL 144 (241)
Q Consensus 70 ~~~~VLElGcGtGl~sl~la~~g~~---V~~tD~~~~~~~l~~~~~n~~~n~~~~~~~~l~w~~~~~~~~~--~~fDlIl 144 (241)
...+++||-||.|-+++.+.+.|.+ |.++|+++ .+.+..+.|.. ...+...|..+....... ..+|+|+
T Consensus 15 ~~~~vidLFaG~GG~~~g~~~aG~~~~~v~a~E~d~--~a~~ty~~N~~----~~~~~~~DI~~i~~~~i~~~~~~Dll~ 88 (295)
T 2qrv_A 15 KPIRVLSLFDGIATGLLVLKDLGIQVDRYIASEVCE--DSITVGMVRHQ----GKIMYVGDVRSVTQKHIQEWGPFDLVI 88 (295)
T ss_dssp CCEEEEEETCTTTHHHHHHHHTTBCEEEEEEECCCH--HHHHHHHHHTT----TCEEEECCGGGCCHHHHHHTCCCSEEE
T ss_pred CCCEEEEeCcCccHHHHHHHHCCCccceEEEEECCH--HHHHHHHHhCC----CCceeCCChHHccHHHhcccCCcCEEE
Confidence 4568999999999999999999984 58999995 46666665542 223344444443211111 3699999
Q ss_pred EcCCc
Q 026274 145 GADVF 149 (241)
Q Consensus 145 ~~dvl 149 (241)
++.+.
T Consensus 89 ggpPC 93 (295)
T 2qrv_A 89 GGSPC 93 (295)
T ss_dssp ECCCC
T ss_pred ecCCC
Confidence 88654
|
| >4h0n_A DNMT2; SAH binding, transferase; HET: SAH; 2.71A {Spodoptera frugiperda} | Back alignment and structure |
|---|
Probab=94.33 E-value=0.047 Score=47.47 Aligned_cols=123 Identities=11% Similarity=0.021 Sum_probs=71.1
Q ss_pred CeEEEecCCCCHHHHHHHHhCC--E-EEEEcCCCcHHHHHHHHHHHHHcCCceEEEEeecCCCCcC-cCCCCCcEEEEcC
Q 026274 72 ANVVELGAGTSLPGLVAAKVGS--N-VTLTDDSNRIEVLKNMRRVCEMNKLNCRVMGLTWGFLDAS-IFDLNPNIILGAD 147 (241)
Q Consensus 72 ~~VLElGcGtGl~sl~la~~g~--~-V~~tD~~~~~~~l~~~~~n~~~n~~~~~~~~l~w~~~~~~-~~~~~fDlIl~~d 147 (241)
.+++||-||.|-+++.+.+.|. + |.++|+++ .+.+..+.|.. ...+...|+.+.... .....+|+++++.
T Consensus 4 ~~~idLFaG~GG~~~G~~~aG~~~~~v~a~e~d~--~a~~ty~~N~~----~~~~~~~DI~~~~~~~~~~~~~D~l~ggp 77 (333)
T 4h0n_A 4 HKILELYSGIGGMHCAWKESGLDGEIVAAVDINT--VANSVYKHNFP----ETNLLNRNIQQLTPQVIKKWNVDTILMSP 77 (333)
T ss_dssp EEEEEETCTTTHHHHHHHHHTCSEEEEEEECCCH--HHHHHHHHHCT----TSCEECCCGGGCCHHHHHHTTCCEEEECC
T ss_pred CEEEEECcCccHHHHHHHHcCCCceEEEEEeCCH--HHHHHHHHhCC----CCceeccccccCCHHHhccCCCCEEEecC
Confidence 3799999999999999999885 4 78999995 46666666543 222333444433211 1112689999887
Q ss_pred CcCCC---------cc-HHHHHHHHHHHhhcC--CCeEEEEEeeccC----chhHHHHHHHHcCCEEEEE
Q 026274 148 VFYDA---------SA-FDDLFATITYLLQSS--PGSVFITTYHNRS----GHHLIEFLMVKWGLKCVKL 201 (241)
Q Consensus 148 vly~~---------~~-~~~ll~~~~~lL~~~--~~~~~~~~~~~r~----~~~~~~~~~~~~g~~~~~i 201 (241)
+.-.. .+ -..|+..+.++++.- |. +|++..-..- ....+...+++.|+.+...
T Consensus 78 PCQ~fS~ag~~~~~~d~r~~L~~~~~r~i~~~~~P~-~~vlENV~gl~~~~~~~~i~~~l~~~GY~v~~~ 146 (333)
T 4h0n_A 78 PCQPFTRNGKYLDDNDPRTNSFLYLIGILDQLDNVD-YILMENVKGFENSTVRNLFIDKLKECNFIYQEF 146 (333)
T ss_dssp CCCCSEETTEECCTTCTTSCCHHHHHHHGGGCTTCC-EEEEEECTTGGGSHHHHHHHHHHHHTTEEEEEE
T ss_pred CCcchhhhhhccCCcCcccccHHHHHHHHHHhcCCC-EEEEecchhhhhhhHHHHHHHHHHhCCCeEEEE
Confidence 65332 11 113444555555432 44 4444432221 1223333457889988664
|
| >4ej6_A Putative zinc-binding dehydrogenase; structural genomics, nysgrc, PSI-biology, NEW YORK structura genomics research consortium; 1.89A {Sinorhizobium meliloti} PDB: 4ejm_A* | Back alignment and structure |
|---|
Probab=93.53 E-value=0.23 Score=43.36 Aligned_cols=121 Identities=14% Similarity=0.123 Sum_probs=65.1
Q ss_pred EEEEeccCcCCcceEEeccHHHHHHHHHhccCCCCCCeEEEecCC-CCHHHHHHHH-hCC-EEEEEcCCCcHHHHHHHHH
Q 026274 36 SIAIIENMKEEYGLFVWPCSVILAEYVWQQRYRFSGANVVELGAG-TSLPGLVAAK-VGS-NVTLTDDSNRIEVLKNMRR 112 (241)
Q Consensus 36 ~i~i~~~~~~~~g~~~W~~s~~L~~~l~~~~~~~~~~~VLElGcG-tGl~sl~la~-~g~-~V~~tD~~~~~~~l~~~~~ 112 (241)
-+.+.++.....+. .......+.+.........|.+||=.|+| .|++++.+|+ .|+ +|+++|.++ +-++.+++
T Consensus 150 ~~~~P~~~~~~~aa--l~~~~~ta~~~l~~~~~~~g~~VlV~GaG~vG~~aiqlak~~Ga~~Vi~~~~~~--~~~~~a~~ 225 (370)
T 4ej6_A 150 AFEIPLTLDPVHGA--FCEPLACCLHGVDLSGIKAGSTVAILGGGVIGLLTVQLARLAGATTVILSTRQA--TKRRLAEE 225 (370)
T ss_dssp EEEECTTSCTTGGG--GHHHHHHHHHHHHHHTCCTTCEEEEECCSHHHHHHHHHHHHTTCSEEEEECSCH--HHHHHHHH
T ss_pred EEECCCCCCHHHHh--hhhHHHHHHHHHHhcCCCCCCEEEEECCCHHHHHHHHHHHHcCCCEEEEECCCH--HHHHHHHH
Confidence 34455554444443 22233333333333445678899999987 3666666666 488 899999995 34554443
Q ss_pred HHHHcCCceEEEEeecCCCC-----cC---cCCCCCcEEEEcCCcCCCccHHHHHHHHHHHhhcCCCeEEE
Q 026274 113 VCEMNKLNCRVMGLTWGFLD-----AS---IFDLNPNIILGADVFYDASAFDDLFATITYLLQSSPGSVFI 175 (241)
Q Consensus 113 n~~~n~~~~~~~~l~w~~~~-----~~---~~~~~fDlIl~~dvly~~~~~~~ll~~~~~lL~~~~~~~~~ 175 (241)
.+.... ++..+.. .. ...+.+|+|+-+ ......++...++|+ ++|.++
T Consensus 226 ----lGa~~v---i~~~~~~~~~~i~~~~~~~~gg~Dvvid~------~G~~~~~~~~~~~l~--~~G~vv 281 (370)
T 4ej6_A 226 ----VGATAT---VDPSAGDVVEAIAGPVGLVPGGVDVVIEC------AGVAETVKQSTRLAK--AGGTVV 281 (370)
T ss_dssp ----HTCSEE---ECTTSSCHHHHHHSTTSSSTTCEEEEEEC------SCCHHHHHHHHHHEE--EEEEEE
T ss_pred ----cCCCEE---ECCCCcCHHHHHHhhhhccCCCCCEEEEC------CCCHHHHHHHHHHhc--cCCEEE
Confidence 343321 2221111 01 222378988842 222456677777887 344433
|
| >1boo_A Protein (N-4 cytosine-specific methyltransferase PVU II); type II DNA-(cytosine N4) methyltransferase, amino methylation, selenomethionine; HET: SAH; 2.80A {Proteus vulgaris} SCOP: c.66.1.11 | Back alignment and structure |
|---|
Probab=93.16 E-value=0.14 Score=44.11 Aligned_cols=48 Identities=19% Similarity=0.090 Sum_probs=40.7
Q ss_pred CCCCeEEEecCCCCHHHHHHHHhCCEEEEEcCCCcHHHHHHHHHHHHHcC
Q 026274 69 FSGANVVELGAGTSLPGLVAAKVGSNVTLTDDSNRIEVLKNMRRVCEMNK 118 (241)
Q Consensus 69 ~~~~~VLElGcGtGl~sl~la~~g~~V~~tD~~~~~~~l~~~~~n~~~n~ 118 (241)
.+|..|||--||+|..++++.++|.+.+++|+++ .+.+.+++++...+
T Consensus 251 ~~~~~VlDpF~GsGtt~~aa~~~gr~~ig~e~~~--~~~~~~~~r~~~~~ 298 (323)
T 1boo_A 251 EPDDLVVDIFGGSNTTGLVAERESRKWISFEMKP--EYVAASAFRFLDNN 298 (323)
T ss_dssp CTTCEEEETTCTTCHHHHHHHHTTCEEEEEESCH--HHHHHHHGGGSCSC
T ss_pred CCCCEEEECCCCCCHHHHHHHHcCCCEEEEeCCH--HHHHHHHHHHHhcc
Confidence 3677899999999999999999999999999995 57777777665433
|
| >1rjd_A PPM1P, carboxy methyl transferase for protein phosphatase 2A catalytic subunit; SAM dependent methyltransferase; HET: SAM; 1.80A {Saccharomyces cerevisiae} SCOP: c.66.1.37 PDB: 1rje_A* 1rjf_A 1rjg_A* 2ob2_A* 2ob1_A | Back alignment and structure |
|---|
Probab=92.97 E-value=0.84 Score=39.48 Aligned_cols=93 Identities=15% Similarity=0.091 Sum_probs=58.8
Q ss_pred CCeEEEecCCCCHHHHHHHHhCC--EEEEEcCCCcHHHHHHHHHHHHHc----------------------CCceEEEEe
Q 026274 71 GANVVELGAGTSLPGLVAAKVGS--NVTLTDDSNRIEVLKNMRRVCEMN----------------------KLNCRVMGL 126 (241)
Q Consensus 71 ~~~VLElGcGtGl~sl~la~~g~--~V~~tD~~~~~~~l~~~~~n~~~n----------------------~~~~~~~~l 126 (241)
.+.|+.||||......-+...+. .++=+|. |++++.-++.+..+ ..+......
T Consensus 98 ~~qVV~LGaGlDTr~~RL~~~~~~~~~~EvD~---P~vi~~K~~~l~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~v~~ 174 (334)
T 1rjd_A 98 KVQVVNLGCGSDLRMLPLLQMFPHLAYVDIDY---NESVELKNSILRESEILRISLGLSKEDTAKSPFLIDQGRYKLAAC 174 (334)
T ss_dssp SEEEEEETCTTCCTHHHHHHHCTTEEEEEEEC---HHHHHHHHHHHHHSHHHHHHHTCCSSCCCCTTEEEECSSEEEEEC
T ss_pred CcEEEEeCCCCccHHHHhcCcCCCCEEEECCC---HHHHHHHHHHhhhccchhhhcccccccccccccccCCCceEEEec
Confidence 46899999999987777776533 5555555 46776555544433 134555555
Q ss_pred ecCCCC------cCc-CCCCCcEEEEcCCcCCC--ccHHHHHHHHHHHh
Q 026274 127 TWGFLD------ASI-FDLNPNIILGADVFYDA--SAFDDLFATITYLL 166 (241)
Q Consensus 127 ~w~~~~------~~~-~~~~fDlIl~~dvly~~--~~~~~ll~~~~~lL 166 (241)
|..+.. ... ....+.++++--+++|. +....+++.+....
T Consensus 175 DL~d~~w~~~ll~~~~d~~~Ptl~iaEgvL~YL~~~~~~~ll~~ia~~~ 223 (334)
T 1rjd_A 175 DLNDITETTRLLDVCTKREIPTIVISECLLCYMHNNESQLLINTIMSKF 223 (334)
T ss_dssp CTTCHHHHHHHHHTTCCTTSCEEEEEESCGGGSCHHHHHHHHHHHHHHC
T ss_pred CCCCcHHHHHHHHhcCCCCCCEEEEEcchhhCCCHHHHHHHHHHHHhhC
Confidence 554421 111 12357788888888774 56778888888876
|
| >1eg2_A Modification methylase RSRI; rossmann fold, exocyclic amino DNA methyltransferase RSRI, D binding, DNA modification, DNA methylation; HET: MTA; 1.75A {Rhodobacter sphaeroides} SCOP: c.66.1.11 PDB: 1nw5_A* 1nw6_A* 1nw7_A* 1nw8_A | Back alignment and structure |
|---|
Probab=92.90 E-value=0.22 Score=42.92 Aligned_cols=60 Identities=20% Similarity=0.212 Sum_probs=44.2
Q ss_pred HHHHHHHHhccCCCCCCeEEEecCCCCHHHHHHHHhCCEEEEEcCCCc-HHHHHHHHHHHHH
Q 026274 56 VILAEYVWQQRYRFSGANVVELGAGTSLPGLVAAKVGSNVTLTDDSNR-IEVLKNMRRVCEM 116 (241)
Q Consensus 56 ~~L~~~l~~~~~~~~~~~VLElGcGtGl~sl~la~~g~~V~~tD~~~~-~~~l~~~~~n~~~ 116 (241)
..|.+.+.... ..+|..|||--||+|..++++.++|.+.+++|+++. .+.++.+++++..
T Consensus 229 ~~l~~~~i~~~-~~~~~~vlDpF~GsGtt~~aa~~~~r~~ig~e~~~~~~~~~~~~~~Rl~~ 289 (319)
T 1eg2_A 229 AAVIERLVRAL-SHPGSTVLDFFAGSGVTARVAIQEGRNSICTDAAPVFKEYYQKQLTFLQD 289 (319)
T ss_dssp HHHHHHHHHHH-SCTTCEEEETTCTTCHHHHHHHHHTCEEEEEESSTHHHHHHHHHHHHC--
T ss_pred HHHHHHHHHHh-CCCCCEEEecCCCCCHHHHHHHHcCCcEEEEECCccHHHHHHHHHHHHHH
Confidence 45555554432 246778999999999999999999999999999960 0377777776653
|
| >4hp8_A 2-deoxy-D-gluconate 3-dehydrogenase; enzyme function initiative, EFI, structural genomics, oxidor; HET: NAP; 1.35A {Agrobacterium tumefaciens} | Back alignment and structure |
|---|
Probab=92.76 E-value=1.3 Score=36.67 Aligned_cols=83 Identities=14% Similarity=0.159 Sum_probs=56.9
Q ss_pred ccCCCCCCeEEEecCCCCH---HHHHHHHhCCEEEEEcCCCcHHHHHHHHHHHHHcCCceEEEEeecCCCCcC---cCCC
Q 026274 65 QRYRFSGANVVELGAGTSL---PGLVAAKVGSNVTLTDDSNRIEVLKNMRRVCEMNKLNCRVMGLTWGFLDAS---IFDL 138 (241)
Q Consensus 65 ~~~~~~~~~VLElGcGtGl---~sl~la~~g~~V~~tD~~~~~~~l~~~~~n~~~n~~~~~~~~l~w~~~~~~---~~~~ 138 (241)
++..++||.+|==|++.|+ ++..+++.|++|+++|.+.. +.+.+.+...+.++.+...|..+...- ....
T Consensus 3 n~f~L~GKvalVTGas~GIG~aiA~~la~~Ga~Vvi~~r~~~----~~~~~~~~~~g~~~~~~~~Dv~d~~~v~~~~~~g 78 (247)
T 4hp8_A 3 NPFSLEGRKALVTGANTGLGQAIAVGLAAAGAEVVCAARRAP----DETLDIIAKDGGNASALLIDFADPLAAKDSFTDA 78 (247)
T ss_dssp CTTCCTTCEEEETTTTSHHHHHHHHHHHHTTCEEEEEESSCC----HHHHHHHHHTTCCEEEEECCTTSTTTTTTSSTTT
T ss_pred CCcCCCCCEEEEeCcCCHHHHHHHHHHHHcCCEEEEEeCCcH----HHHHHHHHHhCCcEEEEEccCCCHHHHHHHHHhC
Confidence 3456789999999999884 46667778999999999863 233334455677777777777654321 1124
Q ss_pred CCcEEEEcCCcCC
Q 026274 139 NPNIILGADVFYD 151 (241)
Q Consensus 139 ~fDlIl~~dvly~ 151 (241)
+.|+++.+--+..
T Consensus 79 ~iDiLVNNAGi~~ 91 (247)
T 4hp8_A 79 GFDILVNNAGIIR 91 (247)
T ss_dssp CCCEEEECCCCCC
T ss_pred CCCEEEECCCCCC
Confidence 7899987755443
|
| >1zkd_A DUF185; NESG, RPR58, structural genomics, PSI, protein structure INI northeast structural genomics consortium, unknown function; 2.10A {Rhodopseudomonas palustris} SCOP: c.66.1.52 | Back alignment and structure |
|---|
Probab=92.71 E-value=0.38 Score=42.60 Aligned_cols=32 Identities=19% Similarity=0.223 Sum_probs=23.1
Q ss_pred CCeEEEecCCCCHHHHHHHH-h-------C-CEEEEEcCCC
Q 026274 71 GANVVELGAGTSLPGLVAAK-V-------G-SNVTLTDDSN 102 (241)
Q Consensus 71 ~~~VLElGcGtGl~sl~la~-~-------g-~~V~~tD~~~ 102 (241)
.-+|+|+|+|.|.+..-+.+ . . .++.++|+|+
T Consensus 81 ~~~ivElGaG~GtLa~diL~~l~~~p~~~~~~~y~iVE~Sp 121 (387)
T 1zkd_A 81 TLRLIEIGPGRGTMMADALRALRVLPILYQSLSVHLVEINP 121 (387)
T ss_dssp SEEEEEECCTTSHHHHHHHHHHTTSHHHHTTEEEEEECCCH
T ss_pred CcEEEEECCCcchHHHHHHHHHHhCCccccccEEEEEecCH
Confidence 34799999999966544332 1 1 2899999996
|
| >4imr_A 3-oxoacyl-(acyl-carrier-protein) reductase; oxidoreductase, nicotinamide adenine dinucleotide phosphate, structural genomics; HET: NAP; 1.96A {Agrobacterium fabrum} | Back alignment and structure |
|---|
Probab=91.63 E-value=0.22 Score=41.52 Aligned_cols=81 Identities=10% Similarity=0.021 Sum_probs=53.5
Q ss_pred CCCCCeEEEecCCCCH---HHHHHHHhCCEEEEEcCCCcHHHHHHHHHHHHHcCCceEEEEeecCCCCcC--cC-----C
Q 026274 68 RFSGANVVELGAGTSL---PGLVAAKVGSNVTLTDDSNRIEVLKNMRRVCEMNKLNCRVMGLTWGFLDAS--IF-----D 137 (241)
Q Consensus 68 ~~~~~~VLElGcGtGl---~sl~la~~g~~V~~tD~~~~~~~l~~~~~n~~~n~~~~~~~~l~w~~~~~~--~~-----~ 137 (241)
..+++++|=-|++.|+ ++..+++.|++|+++|.++ +.++.+...+...+..+.+...|..+...- .. .
T Consensus 30 ~l~gk~~lVTGas~GIG~aia~~la~~G~~V~~~~r~~--~~~~~~~~~~~~~~~~~~~~~~Dv~~~~~~~~~~~~~~~~ 107 (275)
T 4imr_A 30 GLRGRTALVTGSSRGIGAAIAEGLAGAGAHVILHGVKP--GSTAAVQQRIIASGGTAQELAGDLSEAGAGTDLIERAEAI 107 (275)
T ss_dssp CCTTCEEEETTCSSHHHHHHHHHHHHTTCEEEEEESST--TTTHHHHHHHHHTTCCEEEEECCTTSTTHHHHHHHHHHHH
T ss_pred CCCCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEcCCH--HHHHHHHHHHHhcCCeEEEEEecCCCHHHHHHHHHHHHHh
Confidence 4678899999987663 3444556699999999986 355555555555666777777777654310 00 1
Q ss_pred CCCcEEEEcCCcC
Q 026274 138 LNPNIILGADVFY 150 (241)
Q Consensus 138 ~~fDlIl~~dvly 150 (241)
.+.|+++.+--+.
T Consensus 108 g~iD~lvnnAg~~ 120 (275)
T 4imr_A 108 APVDILVINASAQ 120 (275)
T ss_dssp SCCCEEEECCCCC
T ss_pred CCCCEEEECCCCC
Confidence 3789998765543
|
| >4iin_A 3-ketoacyl-acyl carrier protein reductase (FABG); structural genomics, center for structural genomics of infec diseases, csgid; HET: NAD; 2.40A {Helicobacter pylori} PDB: 4ijk_A | Back alignment and structure |
|---|
Probab=91.52 E-value=0.76 Score=37.88 Aligned_cols=101 Identities=17% Similarity=0.106 Sum_probs=56.9
Q ss_pred EEeccHHHHHHHHHhccCCCCCCeEEEecCCCCH---HHHHHHHhCCEEEEEcCCCcHHHHHHHHHHHHHcCCceEEEEe
Q 026274 50 FVWPCSVILAEYVWQQRYRFSGANVVELGAGTSL---PGLVAAKVGSNVTLTDDSNRIEVLKNMRRVCEMNKLNCRVMGL 126 (241)
Q Consensus 50 ~~W~~s~~L~~~l~~~~~~~~~~~VLElGcGtGl---~sl~la~~g~~V~~tD~~~~~~~l~~~~~n~~~n~~~~~~~~l 126 (241)
+.|-+.-.-.-|...+....++++||=.|++.|+ +...+++.|++|++++.+. .+..+.+.+.++..+..+.+...
T Consensus 8 ~~~~~~~~~~~~~~~~~m~l~~k~vlITGas~gIG~~la~~l~~~G~~V~~~~r~~-~~~~~~~~~~~~~~~~~~~~~~~ 86 (271)
T 4iin_A 8 SSGVDLGTENLYFQSNAMQFTGKNVLITGASKGIGAEIAKTLASMGLKVWINYRSN-AEVADALKNELEEKGYKAAVIKF 86 (271)
T ss_dssp ----------------CCCCSCCEEEETTCSSHHHHHHHHHHHHTTCEEEEEESSC-HHHHHHHHHHHHHTTCCEEEEEC
T ss_pred ccccccCcceehhhhhhcccCCCEEEEECCCcHHHHHHHHHHHHCCCEEEEEeCCC-HHHHHHHHHHHHhcCCceEEEEC
Confidence 4455444444455555556788999999988763 3444556699999999965 35666666666666777777777
Q ss_pred ecCCCCc--CcC------CCCCcEEEEcCCcCC
Q 026274 127 TWGFLDA--SIF------DLNPNIILGADVFYD 151 (241)
Q Consensus 127 ~w~~~~~--~~~------~~~fDlIl~~dvly~ 151 (241)
|..+... ... ..++|+++.+--+..
T Consensus 87 D~~~~~~v~~~~~~~~~~~g~id~li~nAg~~~ 119 (271)
T 4iin_A 87 DAASESDFIEAIQTIVQSDGGLSYLVNNAGVVR 119 (271)
T ss_dssp CTTCHHHHHHHHHHHHHHHSSCCEEEECCCCCC
T ss_pred CCCCHHHHHHHHHHHHHhcCCCCEEEECCCcCC
Confidence 7665321 001 136899887655543
|
| >4fn4_A Short chain dehydrogenase; NADH-binding, rossmann fold, oxidoreductase; HET: NAD; 1.75A {Sulfolobus acidocaldarius} | Back alignment and structure |
|---|
Probab=91.45 E-value=0.77 Score=38.10 Aligned_cols=80 Identities=10% Similarity=-0.026 Sum_probs=58.3
Q ss_pred CCCCCeEEEecCCCCH---HHHHHHHhCCEEEEEcCCCcHHHHHHHHHHHHHcCCceEEEEeecCCCCcC--cC------
Q 026274 68 RFSGANVVELGAGTSL---PGLVAAKVGSNVTLTDDSNRIEVLKNMRRVCEMNKLNCRVMGLTWGFLDAS--IF------ 136 (241)
Q Consensus 68 ~~~~~~VLElGcGtGl---~sl~la~~g~~V~~tD~~~~~~~l~~~~~n~~~n~~~~~~~~l~w~~~~~~--~~------ 136 (241)
..+||.+|==|++.|+ ++..+++.|++|+++|.++ +.++.+.+.++..+.++.+...|..+..+- ..
T Consensus 4 sL~gKvalVTGas~GIG~aiA~~la~~Ga~Vv~~~~~~--~~~~~~~~~i~~~g~~~~~~~~Dvt~~~~v~~~~~~~~~~ 81 (254)
T 4fn4_A 4 SLKNKVVIVTGAGSGIGRAIAKKFALNDSIVVAVELLE--DRLNQIVQELRGMGKEVLGVKADVSKKKDVEEFVRRTFET 81 (254)
T ss_dssp GGTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCH--HHHHHHHHHHHHTTCCEEEEECCTTSHHHHHHHHHHHHHH
T ss_pred CCCCCEEEEeCCCCHHHHHHHHHHHHcCCEEEEEECCH--HHHHHHHHHHHhcCCcEEEEEccCCCHHHHHHHHHHHHHH
Confidence 3589999999999884 4566777799999999995 577777777777788887777777654320 00
Q ss_pred CCCCcEEEEcCCc
Q 026274 137 DLNPNIILGADVF 149 (241)
Q Consensus 137 ~~~fDlIl~~dvl 149 (241)
-++.|+++.+--+
T Consensus 82 ~G~iDiLVNNAGi 94 (254)
T 4fn4_A 82 YSRIDVLCNNAGI 94 (254)
T ss_dssp HSCCCEEEECCCC
T ss_pred cCCCCEEEECCcc
Confidence 1378999876543
|
| >3s2e_A Zinc-containing alcohol dehydrogenase superfamily; FURX, oxidoreductase; HET: NAD; 1.76A {Ralstonia eutropha} PDB: 3s1l_A* 3s2f_A* 3s2g_A* 3s2i_A* 1llu_A* 3meq_A* | Back alignment and structure |
|---|
Probab=90.97 E-value=0.77 Score=39.24 Aligned_cols=101 Identities=16% Similarity=0.056 Sum_probs=58.4
Q ss_pred HHHHHHhccCCCCCCeEEEecCC-CCHHHHHHHH-hCCEEEEEcCCCcHHHHHHHHHHHHHcCCceEEEEeecCCCCc--
Q 026274 58 LAEYVWQQRYRFSGANVVELGAG-TSLPGLVAAK-VGSNVTLTDDSNRIEVLKNMRRVCEMNKLNCRVMGLTWGFLDA-- 133 (241)
Q Consensus 58 L~~~l~~~~~~~~~~~VLElGcG-tGl~sl~la~-~g~~V~~tD~~~~~~~l~~~~~n~~~n~~~~~~~~l~w~~~~~-- 133 (241)
.+.+........+|.+||-.||| .|+..+.+|+ .|++|+++|.++ +-++.+++ .+... .++..+...
T Consensus 154 ta~~~l~~~~~~~g~~VlV~GaG~vG~~a~qla~~~Ga~Vi~~~~~~--~~~~~~~~----lGa~~---~i~~~~~~~~~ 224 (340)
T 3s2e_A 154 TVYKGLKVTDTRPGQWVVISGIGGLGHVAVQYARAMGLRVAAVDIDD--AKLNLARR----LGAEV---AVNARDTDPAA 224 (340)
T ss_dssp HHHHHHHTTTCCTTSEEEEECCSTTHHHHHHHHHHTTCEEEEEESCH--HHHHHHHH----TTCSE---EEETTTSCHHH
T ss_pred HHHHHHHHcCCCCCCEEEEECCCHHHHHHHHHHHHCCCeEEEEeCCH--HHHHHHHH----cCCCE---EEeCCCcCHHH
Confidence 33444444455678899999998 4777777777 589999999985 45554433 34332 123222110
Q ss_pred Cc--CCCCCcEEEEcCCcCCCccHHHHHHHHHHHhhcCCCeEEE
Q 026274 134 SI--FDLNPNIILGADVFYDASAFDDLFATITYLLQSSPGSVFI 175 (241)
Q Consensus 134 ~~--~~~~fDlIl~~dvly~~~~~~~ll~~~~~lL~~~~~~~~~ 175 (241)
.. ....+|+|+-+ ......++...++|+ ++|.++
T Consensus 225 ~~~~~~g~~d~vid~------~g~~~~~~~~~~~l~--~~G~iv 260 (340)
T 3s2e_A 225 WLQKEIGGAHGVLVT------AVSPKAFSQAIGMVR--RGGTIA 260 (340)
T ss_dssp HHHHHHSSEEEEEES------SCCHHHHHHHHHHEE--EEEEEE
T ss_pred HHHHhCCCCCEEEEe------CCCHHHHHHHHHHhc--cCCEEE
Confidence 00 01267887743 123456677777887 344433
|
| >3tka_A Ribosomal RNA small subunit methyltransferase H; HET: SAM CTN PG4; 2.25A {Escherichia coli} | Back alignment and structure |
|---|
Probab=90.55 E-value=0.22 Score=43.34 Aligned_cols=57 Identities=5% Similarity=0.015 Sum_probs=40.7
Q ss_pred CCCCCCeEEEecCCCCHHHHHHHHh-C--CEEEEEcCCCcHHHHHHHHHHHHHcCCceEEEEeec
Q 026274 67 YRFSGANVVELGAGTSLPGLVAAKV-G--SNVTLTDDSNRIEVLKNMRRVCEMNKLNCRVMGLTW 128 (241)
Q Consensus 67 ~~~~~~~VLElGcGtGl~sl~la~~-g--~~V~~tD~~~~~~~l~~~~~n~~~n~~~~~~~~l~w 128 (241)
...+|..++|..||.|--+.++++. | .+|++.|.++ ++++.++ ++ ...++.+...++
T Consensus 54 ~i~pggiyVD~TlG~GGHS~~iL~~lg~~GrVig~D~Dp--~Al~~A~-rL--~~~Rv~lv~~nF 113 (347)
T 3tka_A 54 NIRPDGIYIDGTFGRGGHSRLILSQLGEEGRLLAIDRDP--QAIAVAK-TI--DDPRFSIIHGPF 113 (347)
T ss_dssp CCCTTCEEEESCCTTSHHHHHHHTTCCTTCEEEEEESCH--HHHHHHT-TC--CCTTEEEEESCG
T ss_pred CCCCCCEEEEeCcCCCHHHHHHHHhCCCCCEEEEEECCH--HHHHHHH-hh--cCCcEEEEeCCH
Confidence 3446789999999999999988875 4 3899999995 6888774 22 233444444433
|
| >4f3n_A Uncharacterized ACR, COG1565 superfamily; structural genomics, niaid, national institute of allergy AN infectious diseases; 1.75A {Burkholderia thailandensis} PDB: 4g67_A* | Back alignment and structure |
|---|
Probab=90.41 E-value=0.25 Score=44.41 Aligned_cols=48 Identities=27% Similarity=0.201 Sum_probs=29.7
Q ss_pred HHHHHHHHhccCCCCCCeEEEecCCCCHHHHHHHH----hC---CEEEEEcCCCc
Q 026274 56 VILAEYVWQQRYRFSGANVVELGAGTSLPGLVAAK----VG---SNVTLTDDSNR 103 (241)
Q Consensus 56 ~~L~~~l~~~~~~~~~~~VLElGcGtGl~sl~la~----~g---~~V~~tD~~~~ 103 (241)
.+++.|+...-......+|+|+|+|+|.+..-+.+ .+ .++.++++|+.
T Consensus 123 e~la~~~~~~~~~~g~~~ivE~GaG~GtLa~DiL~~l~~~~~~~~~y~iVE~Sp~ 177 (432)
T 4f3n_A 123 QTLARPVAQALDASGTRRVMEFGAGTGKLAAGLLTALAALGVELDEYAIVDLSGE 177 (432)
T ss_dssp HHHHHHHHHHHHHHTCCEEEEESCTTSHHHHHHHHHHHHTTCCCSEEEEECTTSS
T ss_pred HHHHHHHHHHHHhcCCCeEEEeCCCccHHHHHHHHHHHhcCCCCceEEEEEcCHH
Confidence 34555554322111246899999999965444332 23 27999999983
|
| >1f8f_A Benzyl alcohol dehydrogenase; rossmann fold, oxidoreductase; HET: NAD; 2.20A {Acinetobacter calcoaceticus} SCOP: b.35.1.2 c.2.1.1 | Back alignment and structure |
|---|
Probab=90.35 E-value=0.78 Score=39.73 Aligned_cols=90 Identities=22% Similarity=0.190 Sum_probs=52.9
Q ss_pred hccCCCCCCeEEEecCCC-CHHHHHHHH-hCC-EEEEEcCCCcHHHHHHHHHHHHHcCCceEEEEeecCCCC--c---Cc
Q 026274 64 QQRYRFSGANVVELGAGT-SLPGLVAAK-VGS-NVTLTDDSNRIEVLKNMRRVCEMNKLNCRVMGLTWGFLD--A---SI 135 (241)
Q Consensus 64 ~~~~~~~~~~VLElGcGt-Gl~sl~la~-~g~-~V~~tD~~~~~~~l~~~~~n~~~n~~~~~~~~l~w~~~~--~---~~ 135 (241)
.......|.+||-+|||. |+..+.+|+ .|+ +|+++|.++ +-++.+++ .+... + ++..+.. + ..
T Consensus 184 ~~~~~~~g~~VlV~GaG~vG~~a~qlak~~Ga~~Vi~~~~~~--~~~~~a~~----lGa~~-v--i~~~~~~~~~~~~~~ 254 (371)
T 1f8f_A 184 NALKVTPASSFVTWGAGAVGLSALLAAKVCGASIIIAVDIVE--SRLELAKQ----LGATH-V--INSKTQDPVAAIKEI 254 (371)
T ss_dssp TTTCCCTTCEEEEESCSHHHHHHHHHHHHHTCSEEEEEESCH--HHHHHHHH----HTCSE-E--EETTTSCHHHHHHHH
T ss_pred hccCCCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEECCCH--HHHHHHHH----cCCCE-E--ecCCccCHHHHHHHh
Confidence 334556788999999874 777777776 588 799999985 45555543 24322 1 2222211 0 11
Q ss_pred CCCCCcEEEEcCCcCCCccHHHHHHHHHHHhhc
Q 026274 136 FDLNPNIILGADVFYDASAFDDLFATITYLLQS 168 (241)
Q Consensus 136 ~~~~fDlIl~~dvly~~~~~~~ll~~~~~lL~~ 168 (241)
....+|+|+-+ ......++...++|++
T Consensus 255 ~~gg~D~vid~------~g~~~~~~~~~~~l~~ 281 (371)
T 1f8f_A 255 TDGGVNFALES------TGSPEILKQGVDALGI 281 (371)
T ss_dssp TTSCEEEEEEC------SCCHHHHHHHHHTEEE
T ss_pred cCCCCcEEEEC------CCCHHHHHHHHHHHhc
Confidence 12268888732 1223566777778873
|
| >3lyl_A 3-oxoacyl-(acyl-carrier-protein) reductase; alpha and beta protein, NAD(P)-binding rossmann fold, csgid, oxidoreductase; 1.95A {Francisella tularensis subsp} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=90.25 E-value=2.6 Score=33.82 Aligned_cols=80 Identities=14% Similarity=0.150 Sum_probs=52.6
Q ss_pred CCCCeEEEecCCCCH---HHHHHHHhCCEEEEEcCCCcHHHHHHHHHHHHHcCCceEEEEeecCCCCc--Cc------CC
Q 026274 69 FSGANVVELGAGTSL---PGLVAAKVGSNVTLTDDSNRIEVLKNMRRVCEMNKLNCRVMGLTWGFLDA--SI------FD 137 (241)
Q Consensus 69 ~~~~~VLElGcGtGl---~sl~la~~g~~V~~tD~~~~~~~l~~~~~n~~~n~~~~~~~~l~w~~~~~--~~------~~ 137 (241)
.+++++|=.|++.|+ ++..+++.|++|++++.++ +-++.+...+...+.++.+...|..+... .. ..
T Consensus 3 l~~k~vlITGas~gIG~~~a~~l~~~G~~v~~~~r~~--~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~ 80 (247)
T 3lyl_A 3 LNEKVALVTGASRGIGFEVAHALASKGATVVGTATSQ--ASAEKFENSMKEKGFKARGLVLNISDIESIQNFFAEIKAEN 80 (247)
T ss_dssp TTTCEEEESSCSSHHHHHHHHHHHHTTCEEEEEESSH--HHHHHHHHHHHHTTCCEEEEECCTTCHHHHHHHHHHHHHTT
T ss_pred CCCCEEEEECCCChHHHHHHHHHHHCCCEEEEEeCCH--HHHHHHHHHHHhcCCceEEEEecCCCHHHHHHHHHHHHHHc
Confidence 467889999977653 3444555699999999985 46666666666666677777777655321 00 11
Q ss_pred CCCcEEEEcCCcC
Q 026274 138 LNPNIILGADVFY 150 (241)
Q Consensus 138 ~~fDlIl~~dvly 150 (241)
.++|+++.+--+.
T Consensus 81 ~~id~li~~Ag~~ 93 (247)
T 3lyl_A 81 LAIDILVNNAGIT 93 (247)
T ss_dssp CCCSEEEECCCCC
T ss_pred CCCCEEEECCCCC
Confidence 3689998776554
|
| >2dph_A Formaldehyde dismutase; dismutation of aldehydes, oxidoreductase; HET: NAD; 2.27A {Pseudomonas putida} | Back alignment and structure |
|---|
Probab=89.97 E-value=0.61 Score=40.93 Aligned_cols=43 Identities=28% Similarity=0.307 Sum_probs=32.5
Q ss_pred CCCCCCeEEEecCCC-CHHHHHHHH-hCC-EEEEEcCCCcHHHHHHHH
Q 026274 67 YRFSGANVVELGAGT-SLPGLVAAK-VGS-NVTLTDDSNRIEVLKNMR 111 (241)
Q Consensus 67 ~~~~~~~VLElGcGt-Gl~sl~la~-~g~-~V~~tD~~~~~~~l~~~~ 111 (241)
....|.+||-+|||. |++.+.+|+ .|+ +|+++|.++ +-++.++
T Consensus 182 ~~~~g~~VlV~GaG~vG~~aiqlak~~Ga~~Vi~~~~~~--~~~~~a~ 227 (398)
T 2dph_A 182 GVKPGSHVYIAGAGPVGRCAAAGARLLGAACVIVGDQNP--ERLKLLS 227 (398)
T ss_dssp TCCTTCEEEEECCSHHHHHHHHHHHHHTCSEEEEEESCH--HHHHHHH
T ss_pred CCCCCCEEEEECCCHHHHHHHHHHHHcCCCEEEEEcCCH--HHHHHHH
Confidence 455788999999974 777777777 588 999999985 3455443
|
| >3i1j_A Oxidoreductase, short chain dehydrogenase/reducta; dimer, MIXE beta, structural genomics, PSI-2; 1.90A {Pseudomonas syringae PV} SCOP: c.2.1.0 | Back alignment and structure |
|---|
Probab=89.83 E-value=5.1 Score=31.97 Aligned_cols=82 Identities=13% Similarity=0.087 Sum_probs=50.4
Q ss_pred CCCCCCeEEEecCCCCH---HHHHHHHhCCEEEEEcCCCcHHHHHHHHHHHHHcC-CceEEEEeecCCCCcC----cC--
Q 026274 67 YRFSGANVVELGAGTSL---PGLVAAKVGSNVTLTDDSNRIEVLKNMRRVCEMNK-LNCRVMGLTWGFLDAS----IF-- 136 (241)
Q Consensus 67 ~~~~~~~VLElGcGtGl---~sl~la~~g~~V~~tD~~~~~~~l~~~~~n~~~n~-~~~~~~~l~w~~~~~~----~~-- 136 (241)
...+++++|=.|++.|+ ++..+++.|++|+++|.++ +-++.+.+.+...+ ....+...+....... ..
T Consensus 10 ~~l~~k~vlITGas~gIG~~ia~~l~~~G~~V~~~~r~~--~~~~~~~~~~~~~~~~~~~~~~~d~d~~~~~~~~~~~~~ 87 (247)
T 3i1j_A 10 ELLKGRVILVTGAARGIGAAAARAYAAHGASVVLLGRTE--ASLAEVSDQIKSAGQPQPLIIALNLENATAQQYRELAAR 87 (247)
T ss_dssp TTTTTCEEEESSTTSHHHHHHHHHHHHTTCEEEEEESCH--HHHHHHHHHHHHTTSCCCEEEECCTTTCCHHHHHHHHHH
T ss_pred ccCCCCEEEEeCCCChHHHHHHHHHHHCCCEEEEEecCH--HHHHHHHHHHHhcCCCCceEEEeccccCCHHHHHHHHHH
Confidence 45678999999987653 3344555699999999995 45655555555444 4555666655221111 00
Q ss_pred ----CCCCcEEEEcCCcC
Q 026274 137 ----DLNPNIILGADVFY 150 (241)
Q Consensus 137 ----~~~fDlIl~~dvly 150 (241)
-++.|+++.+--+.
T Consensus 88 ~~~~~g~id~lv~nAg~~ 105 (247)
T 3i1j_A 88 VEHEFGRLDGLLHNASII 105 (247)
T ss_dssp HHHHHSCCSEEEECCCCC
T ss_pred HHHhCCCCCEEEECCccC
Confidence 02689998776543
|
| >4g81_D Putative hexonate dehydrogenase; enzyme function initiative, EFI, structural genomics, dehydr oxidoreductase; 1.90A {Salmonella enterica subsp} | Back alignment and structure |
|---|
Probab=89.70 E-value=0.71 Score=38.34 Aligned_cols=82 Identities=13% Similarity=0.083 Sum_probs=57.2
Q ss_pred CCCCCeEEEecCCCCH---HHHHHHHhCCEEEEEcCCCcHHHHHHHHHHHHHcCCceEEEEeecCCCCcC--c------C
Q 026274 68 RFSGANVVELGAGTSL---PGLVAAKVGSNVTLTDDSNRIEVLKNMRRVCEMNKLNCRVMGLTWGFLDAS--I------F 136 (241)
Q Consensus 68 ~~~~~~VLElGcGtGl---~sl~la~~g~~V~~tD~~~~~~~l~~~~~n~~~n~~~~~~~~l~w~~~~~~--~------~ 136 (241)
.++||.+|==|++.|+ ++..+++.|++|+++|.++ +.++.+.+.+...+.++.....|..+...- . .
T Consensus 6 ~L~gKvalVTGas~GIG~aia~~la~~Ga~Vvi~~~~~--~~~~~~~~~l~~~g~~~~~~~~Dv~~~~~v~~~~~~~~~~ 83 (255)
T 4g81_D 6 DLTGKTALVTGSARGLGFAYAEGLAAAGARVILNDIRA--TLLAESVDTLTRKGYDAHGVAFDVTDELAIEAAFSKLDAE 83 (255)
T ss_dssp CCTTCEEEETTCSSHHHHHHHHHHHHTTCEEEECCSCH--HHHHHHHHHHHHTTCCEEECCCCTTCHHHHHHHHHHHHHT
T ss_pred CCCCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEECCH--HHHHHHHHHHHhcCCcEEEEEeeCCCHHHHHHHHHHHHHH
Confidence 4689999999998883 4666777899999999995 566666666666677776666666543210 0 1
Q ss_pred CCCCcEEEEcCCcCC
Q 026274 137 DLNPNIILGADVFYD 151 (241)
Q Consensus 137 ~~~fDlIl~~dvly~ 151 (241)
-++.|+++.+--+..
T Consensus 84 ~G~iDiLVNNAG~~~ 98 (255)
T 4g81_D 84 GIHVDILINNAGIQY 98 (255)
T ss_dssp TCCCCEEEECCCCCC
T ss_pred CCCCcEEEECCCCCC
Confidence 137899987755544
|
| >2ae2_A Protein (tropinone reductase-II); oxidoreductase, tropane alkaloid biosynthesis, reduction of tropinone to pseudotropine; HET: NAP PTO; 1.90A {Datura stramonium} SCOP: c.2.1.2 PDB: 2ae1_A* 1ipe_A* 1ipf_A* | Back alignment and structure |
|---|
Probab=89.23 E-value=3.1 Score=33.82 Aligned_cols=80 Identities=11% Similarity=0.112 Sum_probs=49.9
Q ss_pred CCCCeEEEecCCCCH---HHHHHHHhCCEEEEEcCCCcHHHHHHHHHHHHHcCCceEEEEeecCCCCc--Cc-------C
Q 026274 69 FSGANVVELGAGTSL---PGLVAAKVGSNVTLTDDSNRIEVLKNMRRVCEMNKLNCRVMGLTWGFLDA--SI-------F 136 (241)
Q Consensus 69 ~~~~~VLElGcGtGl---~sl~la~~g~~V~~tD~~~~~~~l~~~~~n~~~n~~~~~~~~l~w~~~~~--~~-------~ 136 (241)
.+++++|=-|++.|+ +...+++.|++|+++|.++ +-++.+...+...+..+.+...|..+... .. +
T Consensus 7 l~~k~vlVTGas~giG~~ia~~l~~~G~~V~~~~r~~--~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~ 84 (260)
T 2ae2_A 7 LEGCTALVTGGSRGIGYGIVEELASLGASVYTCSRNQ--KELNDCLTQWRSKGFKVEASVCDLSSRSERQELMNTVANHF 84 (260)
T ss_dssp CTTCEEEEESCSSHHHHHHHHHHHHTTCEEEEEESCH--HHHHHHHHHHHHTTCEEEEEECCTTCHHHHHHHHHHHHHHT
T ss_pred CCCCEEEEECCCcHHHHHHHHHHHHCCCEEEEEeCCH--HHHHHHHHHHHhcCCcEEEEEcCCCCHHHHHHHHHHHHHHc
Confidence 567899999976553 2334455699999999985 45555544454445566666777665321 01 1
Q ss_pred CCCCcEEEEcCCcC
Q 026274 137 DLNPNIILGADVFY 150 (241)
Q Consensus 137 ~~~fDlIl~~dvly 150 (241)
..++|+++.+--+.
T Consensus 85 ~g~id~lv~~Ag~~ 98 (260)
T 2ae2_A 85 HGKLNILVNNAGIV 98 (260)
T ss_dssp TTCCCEEEECCCCC
T ss_pred CCCCCEEEECCCCC
Confidence 14789988765443
|
| >2zig_A TTHA0409, putative modification methylase; methyltransferase, S- adenosylmethionine, structural genomics, NPPSFA; 2.10A {Thermus thermophilus} PDB: 2zie_A* 2zif_A | Back alignment and structure |
|---|
Probab=89.05 E-value=0.69 Score=39.04 Aligned_cols=78 Identities=17% Similarity=0.235 Sum_probs=46.4
Q ss_pred eEEEEeecCCCCcCcCCCCCcEEEEcCCcCCCc--------------------cHHHHHHHHHHHhhcCCCeEEEEEeec
Q 026274 121 CRVMGLTWGFLDASIFDLNPNIILGADVFYDAS--------------------AFDDLFATITYLLQSSPGSVFITTYHN 180 (241)
Q Consensus 121 ~~~~~l~w~~~~~~~~~~~fDlIl~~dvly~~~--------------------~~~~ll~~~~~lL~~~~~~~~~~~~~~ 180 (241)
.++...|+.+......+++||+|+++++++... .+..+++.+.++|+ ++|.+++.+..
T Consensus 22 ~~i~~gD~~~~l~~l~~~s~DlIvtdPPY~~~~~y~~~~~~~~~~~~~~~~l~~l~~~~~~~~rvLk--~~G~l~i~~~d 99 (297)
T 2zig_A 22 HRLHVGDAREVLASFPEASVHLVVTSPPYWTLKRYEDTPGQLGHIEDYEAFLDELDRVWREVFRLLV--PGGRLVIVVGD 99 (297)
T ss_dssp EEEEESCHHHHHTTSCTTCEEEEEECCCCCCCC-------CCHHHHHHHHHHHHHHHHHHHHHHHEE--EEEEEEEEECC
T ss_pred CEEEECcHHHHHhhCCCCceeEEEECCCCCCccccCCChhhhcccccHHHHHHHHHHHHHHHHHHcC--CCcEEEEEECC
Confidence 456666665433333456899999888876421 13456778889998 55655544321
Q ss_pred c----C--c-------hhHHHHHHHHcCCEEEE
Q 026274 181 R----S--G-------HHLIEFLMVKWGLKCVK 200 (241)
Q Consensus 181 r----~--~-------~~~~~~~~~~~g~~~~~ 200 (241)
. . + ...+..++++.||....
T Consensus 100 ~~~~~~~~g~~~~~~~~~~l~~~~~~~Gf~~~~ 132 (297)
T 2zig_A 100 VAVARRRFGRHLVFPLHADIQVRCRKLGFDNLN 132 (297)
T ss_dssp EEEECC----EEEECHHHHHHHHHHHTTCEEEE
T ss_pred CccccccCCcccccccHHHHHHHHHHcCCeeec
Confidence 1 0 1 12344566788987754
|
| >3l77_A Short-chain alcohol dehydrogenase; oxidoreductase; HET: NJP PG4; 1.60A {Thermococcus sibiricus} SCOP: c.2.1.0 PDB: 3tn7_A* | Back alignment and structure |
|---|
Probab=88.90 E-value=4.2 Score=32.26 Aligned_cols=78 Identities=12% Similarity=0.043 Sum_probs=48.2
Q ss_pred CCeEEEecCCCCH---HHHHHHHhCCEEEEEcCCCcHHHHHHHHHHHH-HcCCceEEEEeecCCCCc--CcCC------C
Q 026274 71 GANVVELGAGTSL---PGLVAAKVGSNVTLTDDSNRIEVLKNMRRVCE-MNKLNCRVMGLTWGFLDA--SIFD------L 138 (241)
Q Consensus 71 ~~~VLElGcGtGl---~sl~la~~g~~V~~tD~~~~~~~l~~~~~n~~-~n~~~~~~~~l~w~~~~~--~~~~------~ 138 (241)
++++|=.|++.|+ +...+++.|++|++++.++ +-++.+.+.+. ..+..+.+...|..+... ...+ +
T Consensus 2 ~k~vlITGas~gIG~~ia~~l~~~G~~V~~~~r~~--~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~v~~~~~~~~~~~g 79 (235)
T 3l77_A 2 MKVAVITGASRGIGEAIARALARDGYALALGARSV--DRLEKIAHELMQEQGVEVFYHHLDVSKAESVEEFSKKVLERFG 79 (235)
T ss_dssp CCEEEEESCSSHHHHHHHHHHHHTTCEEEEEESCH--HHHHHHHHHHHHHHCCCEEEEECCTTCHHHHHHHCC-HHHHHS
T ss_pred CCEEEEECCCcHHHHHHHHHHHHCCCEEEEEeCCH--HHHHHHHHHHHhhcCCeEEEEEeccCCHHHHHHHHHHHHHhcC
Confidence 5678888876553 2334455599999999985 45554444443 446677777777665431 1111 2
Q ss_pred CCcEEEEcCCcC
Q 026274 139 NPNIILGADVFY 150 (241)
Q Consensus 139 ~fDlIl~~dvly 150 (241)
+.|+++.+--+.
T Consensus 80 ~id~li~~Ag~~ 91 (235)
T 3l77_A 80 DVDVVVANAGLG 91 (235)
T ss_dssp SCSEEEECCCCC
T ss_pred CCCEEEECCccc
Confidence 689998775554
|
| >4dvj_A Putative zinc-dependent alcohol dehydrogenase Pro; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 1.99A {Rhizobium etli} | Back alignment and structure |
|---|
Probab=88.59 E-value=0.65 Score=40.29 Aligned_cols=84 Identities=17% Similarity=0.137 Sum_probs=51.2
Q ss_pred CCCeEEEec-CC-CCHHHHHHHHh--CCEEEEEcCCCcHHHHHHHHHHHHHcCCceEEEEeecCCCC----cCcCCCCCc
Q 026274 70 SGANVVELG-AG-TSLPGLVAAKV--GSNVTLTDDSNRIEVLKNMRRVCEMNKLNCRVMGLTWGFLD----ASIFDLNPN 141 (241)
Q Consensus 70 ~~~~VLElG-cG-tGl~sl~la~~--g~~V~~tD~~~~~~~l~~~~~n~~~n~~~~~~~~l~w~~~~----~~~~~~~fD 141 (241)
+|.+||=.| +| .|++.+.+|+. |++|+++|.++ +-++.+++ .+... + ++..+.. .......+|
T Consensus 171 ~g~~VlV~Ga~G~vG~~a~qlak~~~g~~Vi~~~~~~--~~~~~~~~----lGad~-v--i~~~~~~~~~v~~~~~~g~D 241 (363)
T 4dvj_A 171 AAPAILIVGGAGGVGSIAVQIARQRTDLTVIATASRP--ETQEWVKS----LGAHH-V--IDHSKPLAAEVAALGLGAPA 241 (363)
T ss_dssp SEEEEEEESTTSHHHHHHHHHHHHHCCSEEEEECSSH--HHHHHHHH----TTCSE-E--ECTTSCHHHHHHTTCSCCEE
T ss_pred CCCEEEEECCCCHHHHHHHHHHHHhcCCEEEEEeCCH--HHHHHHHH----cCCCE-E--EeCCCCHHHHHHHhcCCCce
Confidence 578899998 55 68888888884 67999999985 34555443 34332 1 2222110 111224688
Q ss_pred EEEEcCCcCCCccHHHHHHHHHHHhhc
Q 026274 142 IILGADVFYDASAFDDLFATITYLLQS 168 (241)
Q Consensus 142 lIl~~dvly~~~~~~~ll~~~~~lL~~ 168 (241)
+|+- ...-...++...++|++
T Consensus 242 vvid------~~g~~~~~~~~~~~l~~ 262 (363)
T 4dvj_A 242 FVFS------TTHTDKHAAEIADLIAP 262 (363)
T ss_dssp EEEE------CSCHHHHHHHHHHHSCT
T ss_pred EEEE------CCCchhhHHHHHHHhcC
Confidence 8874 22344567777788873
|
| >3two_A Mannitol dehydrogenase; cinnamyl-alcohol dehydrogenase, NADP(H) oxidoreductase; HET: NDP; 2.18A {Helicobacter pylori} | Back alignment and structure |
|---|
Probab=88.32 E-value=0.82 Score=39.24 Aligned_cols=50 Identities=14% Similarity=0.059 Sum_probs=34.2
Q ss_pred HHHHhccCCCCCCeEEEecCC-CCHHHHHHHH-hCCEEEEEcCCCcHHHHHHHH
Q 026274 60 EYVWQQRYRFSGANVVELGAG-TSLPGLVAAK-VGSNVTLTDDSNRIEVLKNMR 111 (241)
Q Consensus 60 ~~l~~~~~~~~~~~VLElGcG-tGl~sl~la~-~g~~V~~tD~~~~~~~l~~~~ 111 (241)
.+........+|.+||=.|+| .|++.+.+|+ .|++|+++|.++. -++.++
T Consensus 166 ~~~l~~~~~~~g~~VlV~GaG~vG~~a~qla~~~Ga~Vi~~~~~~~--~~~~~~ 217 (348)
T 3two_A 166 YSPLKFSKVTKGTKVGVAGFGGLGSMAVKYAVAMGAEVSVFARNEH--KKQDAL 217 (348)
T ss_dssp HHHHHHTTCCTTCEEEEESCSHHHHHHHHHHHHTTCEEEEECSSST--THHHHH
T ss_pred HHHHHhcCCCCCCEEEEECCcHHHHHHHHHHHHCCCeEEEEeCCHH--HHHHHH
Confidence 333333355678899999987 3666666666 4889999999873 444443
|
| >1xhl_A Short-chain dehydrogenase/reductase family member putative tropinone reductase-II...; parallel beta-sheet of seven strands in the order 3214567; HET: NDP TNE; 2.40A {Caenorhabditis elegans} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=88.30 E-value=3.1 Score=34.72 Aligned_cols=79 Identities=18% Similarity=0.250 Sum_probs=49.0
Q ss_pred CCCCeEEEecCCCCH---HHHHHHHhCCEEEEEcCCCcHHHHHHHHHHHHHcCC---ceEEEEeecCCCCc--CcCC---
Q 026274 69 FSGANVVELGAGTSL---PGLVAAKVGSNVTLTDDSNRIEVLKNMRRVCEMNKL---NCRVMGLTWGFLDA--SIFD--- 137 (241)
Q Consensus 69 ~~~~~VLElGcGtGl---~sl~la~~g~~V~~tD~~~~~~~l~~~~~n~~~n~~---~~~~~~l~w~~~~~--~~~~--- 137 (241)
.+++++|=.|++.|+ +...+++.|++|++++.++ +-++.+...+...+. .+.+...|..+... ...+
T Consensus 24 l~~k~vlVTGas~gIG~aia~~L~~~G~~V~~~~r~~--~~~~~~~~~l~~~~~~~~~~~~~~~Dv~d~~~v~~~~~~~~ 101 (297)
T 1xhl_A 24 FSGKSVIITGSSNGIGRSAAVIFAKEGAQVTITGRNE--DRLEETKQQILKAGVPAEKINAVVADVTEASGQDDIINTTL 101 (297)
T ss_dssp CTTCEEEETTCSSHHHHHHHHHHHHTTCEEEEEESCH--HHHHHHHHHHHHTTCCGGGEEEEECCTTSHHHHHHHHHHHH
T ss_pred CCCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEeCCH--HHHHHHHHHHHhcCCCCceEEEEecCCCCHHHHHHHHHHHH
Confidence 567889988976553 2333455699999999985 455555554544444 56667777665321 1111
Q ss_pred ---CCCcEEEEcCCc
Q 026274 138 ---LNPNIILGADVF 149 (241)
Q Consensus 138 ---~~fDlIl~~dvl 149 (241)
+++|+++.+--+
T Consensus 102 ~~~g~iD~lvnnAG~ 116 (297)
T 1xhl_A 102 AKFGKIDILVNNAGA 116 (297)
T ss_dssp HHHSCCCEEEECCCC
T ss_pred HhcCCCCEEEECCCc
Confidence 268998876544
|
| >3jyo_A Quinate/shikimate dehydrogenase; enzyme-cofactor complex, amino-acid biosynthesis, aromatic A biosynthesis, NAD, oxidoreductase; HET: NAD; 1.00A {Corynebacterium glutamicum} PDB: 3jyp_A* 3jyq_A* 2nlo_A | Back alignment and structure |
|---|
Probab=88.23 E-value=1 Score=37.89 Aligned_cols=87 Identities=13% Similarity=0.073 Sum_probs=49.6
Q ss_pred HHHHHHhccCCCCCCeEEEecCCCC---HHHHHHHHhCC-EEEEEcCCCcHHHHHHHHHHHHHcCCceEEEEeecCCCCc
Q 026274 58 LAEYVWQQRYRFSGANVVELGAGTS---LPGLVAAKVGS-NVTLTDDSNRIEVLKNMRRVCEMNKLNCRVMGLTWGFLDA 133 (241)
Q Consensus 58 L~~~l~~~~~~~~~~~VLElGcGtG---l~sl~la~~g~-~V~~tD~~~~~~~l~~~~~n~~~n~~~~~~~~l~w~~~~~ 133 (241)
+..-|.......+++++|=+|+| | .+...+++.|+ +|+.++.+. +-.+.+.+.+......+.+...+|.+...
T Consensus 114 ~~~~l~~~~~~l~~k~vlVlGaG-G~g~aia~~L~~~G~~~v~i~~R~~--~~a~~la~~~~~~~~~~~i~~~~~~~l~~ 190 (283)
T 3jyo_A 114 FGRGMEEGLPNAKLDSVVQVGAG-GVGNAVAYALVTHGVQKLQVADLDT--SRAQALADVINNAVGREAVVGVDARGIED 190 (283)
T ss_dssp HHHHHHHHCTTCCCSEEEEECCS-HHHHHHHHHHHHTTCSEEEEECSSH--HHHHHHHHHHHHHHTSCCEEEECSTTHHH
T ss_pred HHHHHHHhCcCcCCCEEEEECCc-HHHHHHHHHHHHCCCCEEEEEECCH--HHHHHHHHHHHhhcCCceEEEcCHHHHHH
Confidence 33334443345688999999998 4 23445666788 799999985 34444444444332223333444433211
Q ss_pred CcCCCCCcEEEEcCCc
Q 026274 134 SIFDLNPNIILGADVF 149 (241)
Q Consensus 134 ~~~~~~fDlIl~~dvl 149 (241)
. -..+|+|+.+-.+
T Consensus 191 ~--l~~~DiVInaTp~ 204 (283)
T 3jyo_A 191 V--IAAADGVVNATPM 204 (283)
T ss_dssp H--HHHSSEEEECSST
T ss_pred H--HhcCCEEEECCCC
Confidence 1 1258999977554
|
| >1p0f_A NADP-dependent alcohol dehydrogenase; ADH topology, NADP(H)-dependent, oxidoreductase; HET: NAP; 1.80A {Rana perezi} SCOP: b.35.1.2 c.2.1.1 PDB: 1p0c_A* | Back alignment and structure |
|---|
Probab=87.91 E-value=0.96 Score=39.20 Aligned_cols=124 Identities=9% Similarity=0.012 Sum_probs=64.8
Q ss_pred EEEeccCcCCcceEEeccHHHHHHH-HHhccCCCCCCeEEEecCC-CCHHHHHHHH-hCC-EEEEEcCCCcHHHHHHHHH
Q 026274 37 IAIIENMKEEYGLFVWPCSVILAEY-VWQQRYRFSGANVVELGAG-TSLPGLVAAK-VGS-NVTLTDDSNRIEVLKNMRR 112 (241)
Q Consensus 37 i~i~~~~~~~~g~~~W~~s~~L~~~-l~~~~~~~~~~~VLElGcG-tGl~sl~la~-~g~-~V~~tD~~~~~~~l~~~~~ 112 (241)
+.+.++.... +. ..+.+...+.. +.......+|.+||=+||| .|+..+.+|+ .|+ +|+++|.++. -++.+++
T Consensus 159 ~~iP~~l~~~-aa-~l~~~~~ta~~~l~~~~~~~~g~~VlV~GaG~vG~~aiqlak~~Ga~~Vi~~~~~~~--~~~~a~~ 234 (373)
T 1p0f_A 159 AKIDPKAPLE-SC-LIGCGFATGYGAAVNTAKVTPGSTCAVFGLGGVGFSAIVGCKAAGASRIIGVGTHKD--KFPKAIE 234 (373)
T ss_dssp EEECTTCCGG-GG-GGGTHHHHHHHHHHTTTCCCTTCEEEEECCSHHHHHHHHHHHHHTCSEEEEECSCGG--GHHHHHH
T ss_pred EECCCCCChh-hh-hhhhHHHHHHHHHHhccCCCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEECCCHH--HHHHHHH
Confidence 4455554333 32 23333333333 3233445578899999987 4666666666 488 8999999862 4444432
Q ss_pred HHHHcCCceEEEEeecCCC----Cc---CcCCCCCcEEEEcCCcCCCccHHHHHHHHHHHhhcCCCeEEEEE
Q 026274 113 VCEMNKLNCRVMGLTWGFL----DA---SIFDLNPNIILGADVFYDASAFDDLFATITYLLQSSPGSVFITT 177 (241)
Q Consensus 113 n~~~n~~~~~~~~l~w~~~----~~---~~~~~~fDlIl~~dvly~~~~~~~ll~~~~~lL~~~~~~~~~~~ 177 (241)
.+... + ++..+. .+ ......+|+|+-+ ......+....++++++.|.++.++
T Consensus 235 ----lGa~~-v--i~~~~~~~~~~~~i~~~t~gg~Dvvid~------~g~~~~~~~~~~~l~~~~G~iv~~G 293 (373)
T 1p0f_A 235 ----LGATE-C--LNPKDYDKPIYEVICEKTNGGVDYAVEC------AGRIETMMNALQSTYCGSGVTVVLG 293 (373)
T ss_dssp ----TTCSE-E--ECGGGCSSCHHHHHHHHTTSCBSEEEEC------SCCHHHHHHHHHTBCTTTCEEEECC
T ss_pred ----cCCcE-E--EecccccchHHHHHHHHhCCCCCEEEEC------CCCHHHHHHHHHHHhcCCCEEEEEc
Confidence 34331 1 222210 00 1112368888832 1224556677778874214444444
|
| >3o26_A Salutaridine reductase; short chain dehydrogenase/reductases, oxidoreductase; HET: NDP; 1.91A {Papaver somniferum} SCOP: c.2.1.0 | Back alignment and structure |
|---|
Probab=87.58 E-value=2.5 Score=34.90 Aligned_cols=80 Identities=13% Similarity=-0.077 Sum_probs=48.9
Q ss_pred CCCCeEEEecCCCCH---HHHHHHHhCCEEEEEcCCCcHHHHHHHHHHHHHc-CCceEEEEeecCCC-Cc--CcC-----
Q 026274 69 FSGANVVELGAGTSL---PGLVAAKVGSNVTLTDDSNRIEVLKNMRRVCEMN-KLNCRVMGLTWGFL-DA--SIF----- 136 (241)
Q Consensus 69 ~~~~~VLElGcGtGl---~sl~la~~g~~V~~tD~~~~~~~l~~~~~n~~~n-~~~~~~~~l~w~~~-~~--~~~----- 136 (241)
.++++||=-|++.|+ ++..+++.|++|++++.++ +-++.+.+.+... +..+.+..+|..+. .. ...
T Consensus 10 ~~~k~vlITGas~GIG~~~a~~L~~~G~~V~~~~r~~--~~~~~~~~~l~~~~~~~~~~~~~Dl~~~~~~v~~~~~~~~~ 87 (311)
T 3o26_A 10 TKRRCAVVTGGNKGIGFEICKQLSSNGIMVVLTCRDV--TKGHEAVEKLKNSNHENVVFHQLDVTDPIATMSSLADFIKT 87 (311)
T ss_dssp --CCEEEESSCSSHHHHHHHHHHHHTTCEEEEEESCH--HHHHHHHHHHHTTTCCSEEEEECCTTSCHHHHHHHHHHHHH
T ss_pred CCCcEEEEecCCchHHHHHHHHHHHCCCEEEEEeCCH--HHHHHHHHHHHhcCCCceEEEEccCCCcHHHHHHHHHHHHH
Confidence 467889999987663 3344555699999999995 3444444444333 34677777777664 21 000
Q ss_pred -CCCCcEEEEcCCcC
Q 026274 137 -DLNPNIILGADVFY 150 (241)
Q Consensus 137 -~~~fDlIl~~dvly 150 (241)
-.++|+++.+--+.
T Consensus 88 ~~g~iD~lv~nAg~~ 102 (311)
T 3o26_A 88 HFGKLDILVNNAGVA 102 (311)
T ss_dssp HHSSCCEEEECCCCC
T ss_pred hCCCCCEEEECCccc
Confidence 13789998776554
|
| >3ucx_A Short chain dehydrogenase; ssgcid, seattle structural genomics center for infectious DI dehydrogenase, oxidoreductase; HET: 1PE; 1.85A {Mycobacterium smegmatis} SCOP: c.2.1.0 | Back alignment and structure |
|---|
Probab=87.50 E-value=3.2 Score=33.84 Aligned_cols=80 Identities=14% Similarity=0.130 Sum_probs=55.5
Q ss_pred CCCCCeEEEecCCCCH---HHHHHHHhCCEEEEEcCCCcHHHHHHHHHHHHHcCCceEEEEeecCCCCc--CcC------
Q 026274 68 RFSGANVVELGAGTSL---PGLVAAKVGSNVTLTDDSNRIEVLKNMRRVCEMNKLNCRVMGLTWGFLDA--SIF------ 136 (241)
Q Consensus 68 ~~~~~~VLElGcGtGl---~sl~la~~g~~V~~tD~~~~~~~l~~~~~n~~~n~~~~~~~~l~w~~~~~--~~~------ 136 (241)
..+++++|=-|++.|+ ++..+++.|++|+++|.++ +.++.+.+.+...+.++.+...|..+... ...
T Consensus 8 ~l~~k~vlVTGas~gIG~aia~~l~~~G~~V~~~~r~~--~~~~~~~~~~~~~~~~~~~~~~Dv~~~~~v~~~~~~~~~~ 85 (264)
T 3ucx_A 8 LLTDKVVVISGVGPALGTTLARRCAEQGADLVLAARTV--ERLEDVAKQVTDTGRRALSVGTDITDDAQVAHLVDETMKA 85 (264)
T ss_dssp TTTTCEEEEESCCTTHHHHHHHHHHHTTCEEEEEESCH--HHHHHHHHHHHHTTCCEEEEECCTTCHHHHHHHHHHHHHH
T ss_pred CcCCcEEEEECCCcHHHHHHHHHHHHCcCEEEEEeCCH--HHHHHHHHHHHhcCCcEEEEEcCCCCHHHHHHHHHHHHHH
Confidence 4578899999998774 3455666799999999985 56666666666667777777777765431 001
Q ss_pred CCCCcEEEEcCCc
Q 026274 137 DLNPNIILGADVF 149 (241)
Q Consensus 137 ~~~fDlIl~~dvl 149 (241)
-.+.|+++.+--+
T Consensus 86 ~g~id~lv~nAg~ 98 (264)
T 3ucx_A 86 YGRVDVVINNAFR 98 (264)
T ss_dssp TSCCSEEEECCCS
T ss_pred cCCCcEEEECCCC
Confidence 1378999876533
|
| >3e8x_A Putative NAD-dependent epimerase/dehydratase; structural genomics, APC7755, NADP, P protein structure initiative; HET: MSE NAP; 2.10A {Bacillus halodurans} | Back alignment and structure |
|---|
Probab=87.32 E-value=8.6 Score=30.35 Aligned_cols=75 Identities=12% Similarity=0.026 Sum_probs=42.9
Q ss_pred CCCCCCeEEEecCCCCHHHHHHHH----hCCEEEEEcCCCcHHHHHHHHHHHHHcCCce-EEEEeecCCCCcCcCCCCCc
Q 026274 67 YRFSGANVVELGAGTSLPGLVAAK----VGSNVTLTDDSNRIEVLKNMRRVCEMNKLNC-RVMGLTWGFLDASIFDLNPN 141 (241)
Q Consensus 67 ~~~~~~~VLElGcGtGl~sl~la~----~g~~V~~tD~~~~~~~l~~~~~n~~~n~~~~-~~~~l~w~~~~~~~~~~~fD 141 (241)
..+++++||=.|+ +|.+|..+++ .|++|++++.++. -++.+.. . .+ .+...|..+.....+ ..+|
T Consensus 17 ~~l~~~~ilVtGa-tG~iG~~l~~~L~~~G~~V~~~~R~~~--~~~~~~~----~--~~~~~~~~Dl~~~~~~~~-~~~D 86 (236)
T 3e8x_A 17 LYFQGMRVLVVGA-NGKVARYLLSELKNKGHEPVAMVRNEE--QGPELRE----R--GASDIVVANLEEDFSHAF-ASID 86 (236)
T ss_dssp ----CCEEEEETT-TSHHHHHHHHHHHHTTCEEEEEESSGG--GHHHHHH----T--TCSEEEECCTTSCCGGGG-TTCS
T ss_pred cCcCCCeEEEECC-CChHHHHHHHHHHhCCCeEEEEECChH--HHHHHHh----C--CCceEEEcccHHHHHHHH-cCCC
Confidence 3457889999985 4555555444 4889999999863 3332221 1 34 556666652112222 3689
Q ss_pred EEEEcCCcCC
Q 026274 142 IILGADVFYD 151 (241)
Q Consensus 142 lIl~~dvly~ 151 (241)
+|+.+-....
T Consensus 87 ~vi~~ag~~~ 96 (236)
T 3e8x_A 87 AVVFAAGSGP 96 (236)
T ss_dssp EEEECCCCCT
T ss_pred EEEECCCCCC
Confidence 9987665544
|
| >4da9_A Short-chain dehydrogenase/reductase; structural genomics, protein structure initiative, PSI-biology; 2.50A {Sinorhizobium meliloti} | Back alignment and structure |
|---|
Probab=87.11 E-value=3.1 Score=34.42 Aligned_cols=81 Identities=9% Similarity=0.014 Sum_probs=53.7
Q ss_pred CCCCCeEEEecCCCCH---HHHHHHHhCCEEEEEcCCCcHHHHHHHHHHHHHcCCceEEEEeecCCCCc--CcCC-----
Q 026274 68 RFSGANVVELGAGTSL---PGLVAAKVGSNVTLTDDSNRIEVLKNMRRVCEMNKLNCRVMGLTWGFLDA--SIFD----- 137 (241)
Q Consensus 68 ~~~~~~VLElGcGtGl---~sl~la~~g~~V~~tD~~~~~~~l~~~~~n~~~n~~~~~~~~l~w~~~~~--~~~~----- 137 (241)
...++++|=-|++.|+ ++..+++.|++|+++|... ++.++.+...+...+..+.+...|..+... ...+
T Consensus 26 ~~~~k~~lVTGas~GIG~aia~~la~~G~~V~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~Dv~d~~~v~~~~~~~~~~ 104 (280)
T 4da9_A 26 QKARPVAIVTGGRRGIGLGIARALAASGFDIAITGIGD-AEGVAPVIAELSGLGARVIFLRADLADLSSHQATVDAVVAE 104 (280)
T ss_dssp CCCCCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCC-HHHHHHHHHHHHHTTCCEEEEECCTTSGGGHHHHHHHHHHH
T ss_pred ccCCCEEEEecCCCHHHHHHHHHHHHCCCeEEEEeCCC-HHHHHHHHHHHHhcCCcEEEEEecCCCHHHHHHHHHHHHHH
Confidence 4578889999987763 3445666699999999754 356666666666667777777777766432 0111
Q ss_pred -CCCcEEEEcCCc
Q 026274 138 -LNPNIILGADVF 149 (241)
Q Consensus 138 -~~fDlIl~~dvl 149 (241)
++.|+++.+--+
T Consensus 105 ~g~iD~lvnnAg~ 117 (280)
T 4da9_A 105 FGRIDCLVNNAGI 117 (280)
T ss_dssp HSCCCEEEEECC-
T ss_pred cCCCCEEEECCCc
Confidence 268998866544
|
| >4fgs_A Probable dehydrogenase protein; PSI-biology, nysgrc, structural genomics, NEW YORK structura genomics research consortium, three layer; 1.76A {Rhizobium etli} | Back alignment and structure |
|---|
Probab=86.35 E-value=1.8 Score=36.22 Aligned_cols=79 Identities=13% Similarity=0.032 Sum_probs=50.9
Q ss_pred CCCCCCeEEEecCCCCH---HHHHHHHhCCEEEEEcCCCcHHHHHHHHHHHHHcCCceEEEEeecCCCCc--CcC-----
Q 026274 67 YRFSGANVVELGAGTSL---PGLVAAKVGSNVTLTDDSNRIEVLKNMRRVCEMNKLNCRVMGLTWGFLDA--SIF----- 136 (241)
Q Consensus 67 ~~~~~~~VLElGcGtGl---~sl~la~~g~~V~~tD~~~~~~~l~~~~~n~~~n~~~~~~~~l~w~~~~~--~~~----- 136 (241)
..++||.+|==|++.|+ ++..+++.|++|+++|.++ +.++.+.+. -+.++.....|..+... ...
T Consensus 25 ~rL~gKvalVTGas~GIG~aiA~~la~~Ga~V~i~~r~~--~~l~~~~~~---~g~~~~~~~~Dv~~~~~v~~~~~~~~~ 99 (273)
T 4fgs_A 25 QRLNAKIAVITGATSGIGLAAAKRFVAEGARVFITGRRK--DVLDAAIAE---IGGGAVGIQADSANLAELDRLYEKVKA 99 (273)
T ss_dssp CTTTTCEEEEESCSSHHHHHHHHHHHHTTCEEEEEESCH--HHHHHHHHH---HCTTCEEEECCTTCHHHHHHHHHHHHH
T ss_pred chhCCCEEEEeCcCCHHHHHHHHHHHHCCCEEEEEECCH--HHHHHHHHH---cCCCeEEEEecCCCHHHHHHHHHHHHH
Confidence 35789999999998883 4666777799999999995 455544332 24455556666654321 000
Q ss_pred -CCCCcEEEEcCCcC
Q 026274 137 -DLNPNIILGADVFY 150 (241)
Q Consensus 137 -~~~fDlIl~~dvly 150 (241)
-++.|+++.+--+.
T Consensus 100 ~~G~iDiLVNNAG~~ 114 (273)
T 4fgs_A 100 EAGRIDVLFVNAGGG 114 (273)
T ss_dssp HHSCEEEEEECCCCC
T ss_pred HcCCCCEEEECCCCC
Confidence 13689888665443
|
| >1uuf_A YAHK, zinc-type alcohol dehydrogenase-like protein YAHK; oxidoreductase, zinc binding, oxydoreductase, metal-binding; 1.76A {Escherichia coli} SCOP: b.35.1.2 c.2.1.1 | Back alignment and structure |
|---|
Probab=86.33 E-value=1.2 Score=38.78 Aligned_cols=43 Identities=21% Similarity=0.228 Sum_probs=31.5
Q ss_pred CCCCCCeEEEecCC-CCHHHHHHHH-hCCEEEEEcCCCcHHHHHHHH
Q 026274 67 YRFSGANVVELGAG-TSLPGLVAAK-VGSNVTLTDDSNRIEVLKNMR 111 (241)
Q Consensus 67 ~~~~~~~VLElGcG-tGl~sl~la~-~g~~V~~tD~~~~~~~l~~~~ 111 (241)
...+|.+||-+|+| .|+..+.+|+ .|++|+++|.++ +-++.++
T Consensus 191 ~~~~g~~VlV~GaG~vG~~aiqlak~~Ga~Vi~~~~~~--~~~~~a~ 235 (369)
T 1uuf_A 191 QAGPGKKVGVVGIGGLGHMGIKLAHAMGAHVVAFTTSE--AKREAAK 235 (369)
T ss_dssp TCCTTCEEEEECCSHHHHHHHHHHHHTTCEEEEEESSG--GGHHHHH
T ss_pred CCCCCCEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCH--HHHHHHH
Confidence 45578899999997 3666666666 588999999986 3455444
|
| >1kol_A Formaldehyde dehydrogenase; oxidoreductase; HET: NAD; 1.65A {Pseudomonas putida} SCOP: b.35.1.2 c.2.1.1 | Back alignment and structure |
|---|
Probab=86.19 E-value=1.8 Score=37.76 Aligned_cols=92 Identities=15% Similarity=0.170 Sum_probs=53.5
Q ss_pred CCCCCCeEEEecCC-CCHHHHHHHH-hCC-EEEEEcCCCcHHHHHHHHHHHHHcCCceEEEEeecCCCC---c---Cc-C
Q 026274 67 YRFSGANVVELGAG-TSLPGLVAAK-VGS-NVTLTDDSNRIEVLKNMRRVCEMNKLNCRVMGLTWGFLD---A---SI-F 136 (241)
Q Consensus 67 ~~~~~~~VLElGcG-tGl~sl~la~-~g~-~V~~tD~~~~~~~l~~~~~n~~~n~~~~~~~~l~w~~~~---~---~~-~ 136 (241)
....|.+||-+||| .|++++.+|+ .|+ +|+++|.++ +-++.+++ .+.. + ++..+.. . .. .
T Consensus 182 ~~~~g~~VlV~GaG~vG~~aiqlAk~~Ga~~Vi~~~~~~--~~~~~a~~----lGa~--~--i~~~~~~~~~~~v~~~t~ 251 (398)
T 1kol_A 182 GVGPGSTVYVAGAGPVGLAAAASARLLGAAVVIVGDLNP--ARLAHAKA----QGFE--I--ADLSLDTPLHEQIAALLG 251 (398)
T ss_dssp TCCTTCEEEEECCSHHHHHHHHHHHHTTCSEEEEEESCH--HHHHHHHH----TTCE--E--EETTSSSCHHHHHHHHHS
T ss_pred CCCCCCEEEEECCcHHHHHHHHHHHHCCCCeEEEEcCCH--HHHHHHHH----cCCc--E--EccCCcchHHHHHHHHhC
Confidence 44578899999987 4777777777 488 799999985 45555543 3442 2 3333211 0 01 1
Q ss_pred CCCCcEEEEcCCc---------CCCccHHHHHHHHHHHhhc
Q 026274 137 DLNPNIILGADVF---------YDASAFDDLFATITYLLQS 168 (241)
Q Consensus 137 ~~~fDlIl~~dvl---------y~~~~~~~ll~~~~~lL~~ 168 (241)
...+|+|+-+--- ++.......++...++|++
T Consensus 252 g~g~Dvvid~~G~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 292 (398)
T 1kol_A 252 EPEVDCAVDAVGFEARGHGHEGAKHEAPATVLNSLMQVTRV 292 (398)
T ss_dssp SSCEEEEEECCCTTCBCSSTTGGGSBCTTHHHHHHHHHEEE
T ss_pred CCCCCEEEECCCCcccccccccccccchHHHHHHHHHHHhc
Confidence 2368999843211 1122334466777778873
|
| >1piw_A Hypothetical zinc-type alcohol dehydrogenase- like protein in PRE5-FET4 intergenic...; ADH topology, NADP(H)dependent, oxidoreductase; HET: NAP; 3.00A {Saccharomyces cerevisiae} SCOP: b.35.1.2 c.2.1.1 PDB: 1ps0_A* 1q1n_A | Back alignment and structure |
|---|
Probab=86.15 E-value=1.3 Score=38.27 Aligned_cols=44 Identities=20% Similarity=0.214 Sum_probs=31.7
Q ss_pred cCCCCCCeEEEecCC-CCHHHHHHHH-hCCEEEEEcCCCcHHHHHHHH
Q 026274 66 RYRFSGANVVELGAG-TSLPGLVAAK-VGSNVTLTDDSNRIEVLKNMR 111 (241)
Q Consensus 66 ~~~~~~~~VLElGcG-tGl~sl~la~-~g~~V~~tD~~~~~~~l~~~~ 111 (241)
....+|.+||-+|+| .|+..+.+|+ .|++|+++|.++. -++.++
T Consensus 175 ~~~~~g~~VlV~GaG~vG~~~~qlak~~Ga~Vi~~~~~~~--~~~~~~ 220 (360)
T 1piw_A 175 NGCGPGKKVGIVGLGGIGSMGTLISKAMGAETYVISRSSR--KREDAM 220 (360)
T ss_dssp TTCSTTCEEEEECCSHHHHHHHHHHHHHTCEEEEEESSST--THHHHH
T ss_pred cCCCCCCEEEEECCCHHHHHHHHHHHHCCCEEEEEcCCHH--HHHHHH
Confidence 445578899999996 4666666665 5899999998863 444444
|
| >3is3_A 17BETA-hydroxysteroid dehydrogenase; short chain dehydrogenase/REDU SDR, fungi, oxidoreductase; HET: GOL; 1.48A {Cochliobolus lunatus} PDB: 3qwf_A* 3qwh_A* 3qwi_A* 3itd_A | Back alignment and structure |
|---|
Probab=85.59 E-value=3.7 Score=33.64 Aligned_cols=83 Identities=11% Similarity=0.149 Sum_probs=55.0
Q ss_pred CCCCCCeEEEecCCCCH---HHHHHHHhCCEEEEEcCCCcHHHHHHHHHHHHHcCCceEEEEeecCCCCc--CcCC----
Q 026274 67 YRFSGANVVELGAGTSL---PGLVAAKVGSNVTLTDDSNRIEVLKNMRRVCEMNKLNCRVMGLTWGFLDA--SIFD---- 137 (241)
Q Consensus 67 ~~~~~~~VLElGcGtGl---~sl~la~~g~~V~~tD~~~~~~~l~~~~~n~~~n~~~~~~~~l~w~~~~~--~~~~---- 137 (241)
...+++++|=-|++.|+ ++..+++.|++|++++... .+.++.+.+.+...+.++.+...|..+... ...+
T Consensus 14 ~~l~~k~~lVTGas~gIG~aia~~l~~~G~~V~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~Dv~~~~~v~~~~~~~~~ 92 (270)
T 3is3_A 14 GRLDGKVALVTGSGRGIGAAVAVHLGRLGAKVVVNYANS-TKDAEKVVSEIKALGSDAIAIKADIRQVPEIVKLFDQAVA 92 (270)
T ss_dssp TCCTTCEEEESCTTSHHHHHHHHHHHHTTCEEEEEESSC-HHHHHHHHHHHHHTTCCEEEEECCTTSHHHHHHHHHHHHH
T ss_pred CCcCCCEEEEECCCchHHHHHHHHHHHCCCEEEEEcCCC-HHHHHHHHHHHHhcCCcEEEEEcCCCCHHHHHHHHHHHHH
Confidence 34678999999988764 3445566699999998875 356666666666667777777777665421 0011
Q ss_pred --CCCcEEEEcCCcC
Q 026274 138 --LNPNIILGADVFY 150 (241)
Q Consensus 138 --~~fDlIl~~dvly 150 (241)
.+.|+++.+--+.
T Consensus 93 ~~g~id~lvnnAg~~ 107 (270)
T 3is3_A 93 HFGHLDIAVSNSGVV 107 (270)
T ss_dssp HHSCCCEEECCCCCC
T ss_pred HcCCCCEEEECCCCC
Confidence 2689988665543
|
| >3rkr_A Short chain oxidoreductase; rossmann fold; HET: NAP; 2.42A {Uncultured bacterium BIO5} | Back alignment and structure |
|---|
Probab=85.44 E-value=3.4 Score=33.58 Aligned_cols=81 Identities=17% Similarity=0.150 Sum_probs=52.9
Q ss_pred CCCCCCeEEEecCCCCH---HHHHHHHhCCEEEEEcCCCcHHHHHHHHHHHHHcCCceEEEEeecCCCCc--CcC-----
Q 026274 67 YRFSGANVVELGAGTSL---PGLVAAKVGSNVTLTDDSNRIEVLKNMRRVCEMNKLNCRVMGLTWGFLDA--SIF----- 136 (241)
Q Consensus 67 ~~~~~~~VLElGcGtGl---~sl~la~~g~~V~~tD~~~~~~~l~~~~~n~~~n~~~~~~~~l~w~~~~~--~~~----- 136 (241)
...++++||=.|++.|+ +...+++.|++|++++.++ +-++.+.+.+...+..+.+...|..+... ...
T Consensus 25 ~~l~~k~vlITGas~gIG~~la~~l~~~G~~V~~~~r~~--~~~~~~~~~~~~~~~~~~~~~~D~~~~~~v~~~~~~~~~ 102 (262)
T 3rkr_A 25 SSLSGQVAVVTGASRGIGAAIARKLGSLGARVVLTARDV--EKLRAVEREIVAAGGEAESHACDLSHSDAIAAFATGVLA 102 (262)
T ss_dssp CTTTTCEEEESSTTSHHHHHHHHHHHHTTCEEEEEESCH--HHHHHHHHHHHHTTCEEEEEECCTTCHHHHHHHHHHHHH
T ss_pred hccCCCEEEEECCCChHHHHHHHHHHHCCCEEEEEECCH--HHHHHHHHHHHHhCCceeEEEecCCCHHHHHHHHHHHHH
Confidence 34578899999977653 2333445599999999985 46666666666666777777777655321 001
Q ss_pred -CCCCcEEEEcCCc
Q 026274 137 -DLNPNIILGADVF 149 (241)
Q Consensus 137 -~~~fDlIl~~dvl 149 (241)
-++.|+++.+--+
T Consensus 103 ~~g~id~lv~~Ag~ 116 (262)
T 3rkr_A 103 AHGRCDVLVNNAGV 116 (262)
T ss_dssp HHSCCSEEEECCCC
T ss_pred hcCCCCEEEECCCc
Confidence 1368999876554
|
| >3goh_A Alcohol dehydrogenase, zinc-containing; NP_718042.1, alcohol dehydrogenase superfamily protein, ALCO dehydrogenase groes-like domain; 1.55A {Shewanella oneidensis} | Back alignment and structure |
|---|
Probab=85.39 E-value=1.5 Score=36.98 Aligned_cols=75 Identities=11% Similarity=-0.003 Sum_probs=45.3
Q ss_pred HHHHHHHHhccCCCCCCeEEEecCC-CCHHHHHHHH-hCCEEEEEcCCCcHHHHHHHHHHHHHcCCceEEEEeecCCCCc
Q 026274 56 VILAEYVWQQRYRFSGANVVELGAG-TSLPGLVAAK-VGSNVTLTDDSNRIEVLKNMRRVCEMNKLNCRVMGLTWGFLDA 133 (241)
Q Consensus 56 ~~L~~~l~~~~~~~~~~~VLElGcG-tGl~sl~la~-~g~~V~~tD~~~~~~~l~~~~~n~~~n~~~~~~~~l~w~~~~~ 133 (241)
...+.+........+|.+||=+||| .|++.+.+|+ .|++|++++ ++. -++.+++ .+....+ + + ..
T Consensus 128 ~~ta~~al~~~~~~~g~~VlV~GaG~vG~~a~qlak~~Ga~Vi~~~-~~~--~~~~~~~----lGa~~v~---~--d-~~ 194 (315)
T 3goh_A 128 LLTAWQAFEKIPLTKQREVLIVGFGAVNNLLTQMLNNAGYVVDLVS-ASL--SQALAAK----RGVRHLY---R--E-PS 194 (315)
T ss_dssp HHHHHHHHTTSCCCSCCEEEEECCSHHHHHHHHHHHHHTCEEEEEC-SSC--CHHHHHH----HTEEEEE---S--S-GG
T ss_pred HHHHHHHHhhcCCCCCCEEEEECCCHHHHHHHHHHHHcCCEEEEEE-Chh--hHHHHHH----cCCCEEE---c--C-HH
Confidence 3444444444455678999999996 4666666766 489999999 752 4444433 2332211 1 2 22
Q ss_pred CcCCCCCcEEE
Q 026274 134 SIFDLNPNIIL 144 (241)
Q Consensus 134 ~~~~~~fDlIl 144 (241)
.. ...+|+|+
T Consensus 195 ~v-~~g~Dvv~ 204 (315)
T 3goh_A 195 QV-TQKYFAIF 204 (315)
T ss_dssp GC-CSCEEEEE
T ss_pred Hh-CCCccEEE
Confidence 22 55789887
|
| >3qiv_A Short-chain dehydrogenase or 3-oxoacyl-[acyl-CARR protein] reductase; structural genomics; 2.25A {Mycobacterium avium subsp} | Back alignment and structure |
|---|
Probab=85.35 E-value=3.8 Score=32.94 Aligned_cols=80 Identities=13% Similarity=0.150 Sum_probs=53.3
Q ss_pred CCCCCeEEEecCCCCH---HHHHHHHhCCEEEEEcCCCcHHHHHHHHHHHHHcCCceEEEEeecCCCCc--CcCC-----
Q 026274 68 RFSGANVVELGAGTSL---PGLVAAKVGSNVTLTDDSNRIEVLKNMRRVCEMNKLNCRVMGLTWGFLDA--SIFD----- 137 (241)
Q Consensus 68 ~~~~~~VLElGcGtGl---~sl~la~~g~~V~~tD~~~~~~~l~~~~~n~~~n~~~~~~~~l~w~~~~~--~~~~----- 137 (241)
..+++++|=.|++.|+ +...+++.|++|+++|.++ +.++.+.+.+...+..+.+...|..+... ...+
T Consensus 6 ~~~~k~vlITGas~giG~~~a~~l~~~G~~V~~~~r~~--~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~ 83 (253)
T 3qiv_A 6 RFENKVGIVTGSGGGIGQAYAEALAREGAAVVVADINA--EAAEAVAKQIVADGGTAISVAVDVSDPESAKAMADRTLAE 83 (253)
T ss_dssp TTTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCH--HHHHHHHHHHHHTTCEEEEEECCTTSHHHHHHHHHHHHHH
T ss_pred ccCCCEEEEECCCChHHHHHHHHHHHCCCEEEEEcCCH--HHHHHHHHHHHhcCCcEEEEEccCCCHHHHHHHHHHHHHH
Confidence 3578899999987663 3444555699999999985 56666666666666677777777665321 0011
Q ss_pred -CCCcEEEEcCCc
Q 026274 138 -LNPNIILGADVF 149 (241)
Q Consensus 138 -~~fDlIl~~dvl 149 (241)
.++|+++.+--+
T Consensus 84 ~g~id~li~~Ag~ 96 (253)
T 3qiv_A 84 FGGIDYLVNNAAI 96 (253)
T ss_dssp HSCCCEEEECCCC
T ss_pred cCCCCEEEECCCc
Confidence 278999877655
|
| >3gaf_A 7-alpha-hydroxysteroid dehydrogenase; seattle structural genomics center for infectious disease, ssgcid, oxidoreductase, structural genomics; 2.20A {Brucella melitensis} | Back alignment and structure |
|---|
Probab=85.28 E-value=3.9 Score=33.19 Aligned_cols=82 Identities=12% Similarity=0.046 Sum_probs=54.5
Q ss_pred CCCCCCeEEEecCCCCH---HHHHHHHhCCEEEEEcCCCcHHHHHHHHHHHHHcCCceEEEEeecCCCCc--CcCC----
Q 026274 67 YRFSGANVVELGAGTSL---PGLVAAKVGSNVTLTDDSNRIEVLKNMRRVCEMNKLNCRVMGLTWGFLDA--SIFD---- 137 (241)
Q Consensus 67 ~~~~~~~VLElGcGtGl---~sl~la~~g~~V~~tD~~~~~~~l~~~~~n~~~n~~~~~~~~l~w~~~~~--~~~~---- 137 (241)
...+++++|=-|++.|+ ++..+++.|++|+++|.++ +-++.+.+.+...+.++.+...|..+... ...+
T Consensus 8 ~~l~~k~vlVTGas~gIG~~ia~~l~~~G~~V~~~~r~~--~~~~~~~~~~~~~~~~~~~~~~Dv~d~~~v~~~~~~~~~ 85 (256)
T 3gaf_A 8 FHLNDAVAIVTGAAAGIGRAIAGTFAKAGASVVVTDLKS--EGAEAVAAAIRQAGGKAIGLECNVTDEQHREAVIKAALD 85 (256)
T ss_dssp TCCTTCEEEECSCSSHHHHHHHHHHHHHTCEEEEEESSH--HHHHHHHHHHHHTTCCEEEEECCTTCHHHHHHHHHHHHH
T ss_pred CCCCCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEeCCH--HHHHHHHHHHHhcCCcEEEEECCCCCHHHHHHHHHHHHH
Confidence 34678899999988763 3444566699999999985 46666666666666677777777665321 0011
Q ss_pred --CCCcEEEEcCCcC
Q 026274 138 --LNPNIILGADVFY 150 (241)
Q Consensus 138 --~~fDlIl~~dvly 150 (241)
++.|+++.+--+.
T Consensus 86 ~~g~id~lv~nAg~~ 100 (256)
T 3gaf_A 86 QFGKITVLVNNAGGG 100 (256)
T ss_dssp HHSCCCEEEECCCCC
T ss_pred HcCCCCEEEECCCCC
Confidence 3689998765443
|
| >1pl8_A Human sorbitol dehydrogenase; NAD, oxidoreductase; HET: NAD; 1.90A {Homo sapiens} SCOP: b.35.1.2 c.2.1.1 PDB: 1pl7_A 1pl6_A* 3qe3_A | Back alignment and structure |
|---|
Probab=85.04 E-value=2 Score=36.95 Aligned_cols=43 Identities=33% Similarity=0.389 Sum_probs=31.6
Q ss_pred CCCCCCeEEEecCC-CCHHHHHHHH-hCC-EEEEEcCCCcHHHHHHHH
Q 026274 67 YRFSGANVVELGAG-TSLPGLVAAK-VGS-NVTLTDDSNRIEVLKNMR 111 (241)
Q Consensus 67 ~~~~~~~VLElGcG-tGl~sl~la~-~g~-~V~~tD~~~~~~~l~~~~ 111 (241)
...+|.+||-+||| .|+..+.+|+ .|+ +|+++|.++ +-++.++
T Consensus 168 ~~~~g~~VlV~GaG~vG~~aiqlak~~Ga~~Vi~~~~~~--~~~~~a~ 213 (356)
T 1pl8_A 168 GVTLGHKVLVCGAGPIGMVTLLVAKAMGAAQVVVTDLSA--TRLSKAK 213 (356)
T ss_dssp TCCTTCEEEEECCSHHHHHHHHHHHHTTCSEEEEEESCH--HHHHHHH
T ss_pred CCCCCCEEEEECCCHHHHHHHHHHHHcCCCEEEEECCCH--HHHHHHH
Confidence 45578899999987 3677777776 588 899999985 3444443
|
| >3h7a_A Short chain dehydrogenase; oxidoreductase, PSI-2, NYSGXRC, structural genomics, protein structure initiative; 1.87A {Rhodopseudomonas palustris} | Back alignment and structure |
|---|
Probab=84.97 E-value=2.1 Score=34.88 Aligned_cols=81 Identities=16% Similarity=-0.002 Sum_probs=54.2
Q ss_pred CCCCeEEEecCCCCH---HHHHHHHhCCEEEEEcCCCcHHHHHHHHHHHHHcCCceEEEEeecCCCCc--CcCC-----C
Q 026274 69 FSGANVVELGAGTSL---PGLVAAKVGSNVTLTDDSNRIEVLKNMRRVCEMNKLNCRVMGLTWGFLDA--SIFD-----L 138 (241)
Q Consensus 69 ~~~~~VLElGcGtGl---~sl~la~~g~~V~~tD~~~~~~~l~~~~~n~~~n~~~~~~~~l~w~~~~~--~~~~-----~ 138 (241)
.+++++|=-|++.|+ ++..+++.|++|+++|.++ +.++.+...+...+.++.+...|..+... ...+ .
T Consensus 5 ~~~k~vlVTGas~GIG~aia~~l~~~G~~V~~~~r~~--~~~~~~~~~~~~~~~~~~~~~~Dv~~~~~v~~~~~~~~~~g 82 (252)
T 3h7a_A 5 PRNATVAVIGAGDYIGAEIAKKFAAEGFTVFAGRRNG--EKLAPLVAEIEAAGGRIVARSLDARNEDEVTAFLNAADAHA 82 (252)
T ss_dssp CCSCEEEEECCSSHHHHHHHHHHHHTTCEEEEEESSG--GGGHHHHHHHHHTTCEEEEEECCTTCHHHHHHHHHHHHHHS
T ss_pred CCCCEEEEECCCchHHHHHHHHHHHCCCEEEEEeCCH--HHHHHHHHHHHhcCCeEEEEECcCCCHHHHHHHHHHHHhhC
Confidence 467889999988773 3444556699999999986 35666666666667777777777665421 0011 3
Q ss_pred CCcEEEEcCCcCC
Q 026274 139 NPNIILGADVFYD 151 (241)
Q Consensus 139 ~fDlIl~~dvly~ 151 (241)
+.|+++.+--+..
T Consensus 83 ~id~lv~nAg~~~ 95 (252)
T 3h7a_A 83 PLEVTIFNVGANV 95 (252)
T ss_dssp CEEEEEECCCCCC
T ss_pred CceEEEECCCcCC
Confidence 7899887665543
|
| >3uog_A Alcohol dehydrogenase; structural genomics, protein structure initiative, PSI-biolo YORK structural genomics research consortium; 2.20A {Sinorhizobium meliloti 1021} | Back alignment and structure |
|---|
Probab=84.95 E-value=2.4 Score=36.57 Aligned_cols=55 Identities=31% Similarity=0.356 Sum_probs=36.1
Q ss_pred HHHHHHHHH-hccCCCCCCeEEEecCC-CCHHHHHHHH-hCCEEEEEcCCCcHHHHHHHH
Q 026274 55 SVILAEYVW-QQRYRFSGANVVELGAG-TSLPGLVAAK-VGSNVTLTDDSNRIEVLKNMR 111 (241)
Q Consensus 55 s~~L~~~l~-~~~~~~~~~~VLElGcG-tGl~sl~la~-~g~~V~~tD~~~~~~~l~~~~ 111 (241)
+...+.+.. .......|.+||=+||| .|+..+.+|+ .|++|+++|.++ +-++.++
T Consensus 173 ~~~ta~~al~~~~~~~~g~~VlV~G~G~vG~~a~qla~~~Ga~Vi~~~~~~--~~~~~~~ 230 (363)
T 3uog_A 173 AGLTAWFALVEKGHLRAGDRVVVQGTGGVALFGLQIAKATGAEVIVTSSSR--EKLDRAF 230 (363)
T ss_dssp HHHHHHHHHTTTTCCCTTCEEEEESSBHHHHHHHHHHHHTTCEEEEEESCH--HHHHHHH
T ss_pred HHHHHHHHHHHhcCCCCCCEEEEECCCHHHHHHHHHHHHcCCEEEEEecCc--hhHHHHH
Confidence 333333333 33455678999999977 3666666666 489999999985 3444443
|
| >3ijr_A Oxidoreductase, short chain dehydrogenase/reducta; structural genomics, infectious D center for structural genomics of infectious diseases; HET: NAD; 2.05A {Bacillus anthracis str} PDB: 3i3o_A* | Back alignment and structure |
|---|
Probab=84.71 E-value=3.9 Score=34.01 Aligned_cols=81 Identities=16% Similarity=0.231 Sum_probs=52.8
Q ss_pred CCCCCeEEEecCCCCH---HHHHHHHhCCEEEEEcCCCcHHHHHHHHHHHHHcCCceEEEEeecCCCCc--CcCC-----
Q 026274 68 RFSGANVVELGAGTSL---PGLVAAKVGSNVTLTDDSNRIEVLKNMRRVCEMNKLNCRVMGLTWGFLDA--SIFD----- 137 (241)
Q Consensus 68 ~~~~~~VLElGcGtGl---~sl~la~~g~~V~~tD~~~~~~~l~~~~~n~~~n~~~~~~~~l~w~~~~~--~~~~----- 137 (241)
..+++++|=-|++.|+ ++..+++.|++|+++|.++. ...+.+.+.++..+..+.+...|..+... ...+
T Consensus 44 ~l~gk~vlVTGas~GIG~aia~~la~~G~~V~~~~r~~~-~~~~~~~~~~~~~~~~~~~~~~Dv~d~~~v~~~~~~~~~~ 122 (291)
T 3ijr_A 44 KLKGKNVLITGGDSGIGRAVSIAFAKEGANIAIAYLDEE-GDANETKQYVEKEGVKCVLLPGDLSDEQHCKDIVQETVRQ 122 (291)
T ss_dssp TTTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESSCH-HHHHHHHHHHHTTTCCEEEEESCTTSHHHHHHHHHHHHHH
T ss_pred CCCCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEeCCch-HHHHHHHHHHHhcCCcEEEEECCCCCHHHHHHHHHHHHHH
Confidence 4578999999987763 34445566999999999872 34555555555566677777777665321 0011
Q ss_pred -CCCcEEEEcCCc
Q 026274 138 -LNPNIILGADVF 149 (241)
Q Consensus 138 -~~fDlIl~~dvl 149 (241)
++.|+++.+--+
T Consensus 123 ~g~iD~lvnnAg~ 135 (291)
T 3ijr_A 123 LGSLNILVNNVAQ 135 (291)
T ss_dssp HSSCCEEEECCCC
T ss_pred cCCCCEEEECCCC
Confidence 368999876433
|
| >3e03_A Short chain dehydrogenase; structural genomics, PSI-2, protein structure initiative, NEW YORK structural genomix research consortium; 1.69A {Xanthomonas campestris PV} | Back alignment and structure |
|---|
Probab=84.69 E-value=5.5 Score=32.64 Aligned_cols=82 Identities=16% Similarity=0.115 Sum_probs=51.9
Q ss_pred CCCCeEEEecCCCCH---HHHHHHHhCCEEEEEcCCCcH-----HHHHHHHHHHHHcCCceEEEEeecCCCCc--CcC--
Q 026274 69 FSGANVVELGAGTSL---PGLVAAKVGSNVTLTDDSNRI-----EVLKNMRRVCEMNKLNCRVMGLTWGFLDA--SIF-- 136 (241)
Q Consensus 69 ~~~~~VLElGcGtGl---~sl~la~~g~~V~~tD~~~~~-----~~l~~~~~n~~~n~~~~~~~~l~w~~~~~--~~~-- 136 (241)
.+++++|=-|++.|+ ++..+++.|++|++++.+... +.++.+...+...+.++.+...|..+... ...
T Consensus 4 l~~k~~lVTGas~GIG~aia~~la~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dv~~~~~v~~~~~~ 83 (274)
T 3e03_A 4 LSGKTLFITGASRGIGLAIALRAARDGANVAIAAKSAVANPKLPGTIHSAAAAVNAAGGQGLALKCDIREEDQVRAAVAA 83 (274)
T ss_dssp CTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCCSCCTTSCCCHHHHHHHHHHHTSEEEEEECCTTCHHHHHHHHHH
T ss_pred CCCcEEEEECCCChHHHHHHHHHHHCCCEEEEEeccchhhhhhHHHHHHHHHHHHhcCCeEEEEeCCCCCHHHHHHHHHH
Confidence 578899999998773 344566679999999988520 01444444455556677777777665421 001
Q ss_pred ----CCCCcEEEEcCCcC
Q 026274 137 ----DLNPNIILGADVFY 150 (241)
Q Consensus 137 ----~~~fDlIl~~dvly 150 (241)
-.+.|+++.+--+.
T Consensus 84 ~~~~~g~iD~lvnnAG~~ 101 (274)
T 3e03_A 84 TVDTFGGIDILVNNASAI 101 (274)
T ss_dssp HHHHHSCCCEEEECCCCC
T ss_pred HHHHcCCCCEEEECCCcc
Confidence 13789988776543
|
| >3tjr_A Short chain dehydrogenase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, SCD, NAD; HET: UNL; 1.60A {Mycobacterium avium subsp} | Back alignment and structure |
|---|
Probab=84.53 E-value=4 Score=34.13 Aligned_cols=81 Identities=15% Similarity=0.191 Sum_probs=54.5
Q ss_pred CCCCCeEEEecCCCCH---HHHHHHHhCCEEEEEcCCCcHHHHHHHHHHHHHcCCceEEEEeecCCCCc--CcCC-----
Q 026274 68 RFSGANVVELGAGTSL---PGLVAAKVGSNVTLTDDSNRIEVLKNMRRVCEMNKLNCRVMGLTWGFLDA--SIFD----- 137 (241)
Q Consensus 68 ~~~~~~VLElGcGtGl---~sl~la~~g~~V~~tD~~~~~~~l~~~~~n~~~n~~~~~~~~l~w~~~~~--~~~~----- 137 (241)
..++++||=.|++.|+ ++..+++.|++|+++|.++ +.++.+.+.+...+..+.+...|..+... ...+
T Consensus 28 ~l~gk~vlVTGas~gIG~~la~~l~~~G~~V~~~~r~~--~~~~~~~~~l~~~~~~~~~~~~Dv~d~~~v~~~~~~~~~~ 105 (301)
T 3tjr_A 28 GFDGRAAVVTGGASGIGLATATEFARRGARLVLSDVDQ--PALEQAVNGLRGQGFDAHGVVCDVRHLDEMVRLADEAFRL 105 (301)
T ss_dssp CSTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCH--HHHHHHHHHHHHTTCCEEEEECCTTCHHHHHHHHHHHHHH
T ss_pred ccCCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCH--HHHHHHHHHHHhcCCceEEEEccCCCHHHHHHHHHHHHHh
Confidence 3678899999988663 3444555699999999995 46666666666667777777777665321 0011
Q ss_pred -CCCcEEEEcCCcC
Q 026274 138 -LNPNIILGADVFY 150 (241)
Q Consensus 138 -~~fDlIl~~dvly 150 (241)
.+.|+++.+--+.
T Consensus 106 ~g~id~lvnnAg~~ 119 (301)
T 3tjr_A 106 LGGVDVVFSNAGIV 119 (301)
T ss_dssp HSSCSEEEECCCCC
T ss_pred CCCCCEEEECCCcC
Confidence 3689998775543
|
| >3tfo_A Putative 3-oxoacyl-(acyl-carrier-protein) reducta; structural genomics, PSI-biology, NEW YORK structural genomi research consortium; 2.08A {Sinorhizobium meliloti} | Back alignment and structure |
|---|
Probab=84.44 E-value=3.7 Score=33.76 Aligned_cols=79 Identities=6% Similarity=-0.044 Sum_probs=52.7
Q ss_pred CCCeEEEecCCCCH---HHHHHHHhCCEEEEEcCCCcHHHHHHHHHHHHHcCCceEEEEeecCCCCc--CcC------CC
Q 026274 70 SGANVVELGAGTSL---PGLVAAKVGSNVTLTDDSNRIEVLKNMRRVCEMNKLNCRVMGLTWGFLDA--SIF------DL 138 (241)
Q Consensus 70 ~~~~VLElGcGtGl---~sl~la~~g~~V~~tD~~~~~~~l~~~~~n~~~n~~~~~~~~l~w~~~~~--~~~------~~ 138 (241)
.++++|=-|++.|+ ++..+++.|++|+++|.++ +-++.+.+.+...+..+.+...|..+... ... -+
T Consensus 3 ~~k~~lVTGas~GIG~aia~~la~~G~~V~~~~r~~--~~~~~~~~~l~~~~~~~~~~~~Dv~d~~~v~~~~~~~~~~~g 80 (264)
T 3tfo_A 3 MDKVILITGASGGIGEGIARELGVAGAKILLGARRQ--ARIEAIATEIRDAGGTALAQVLDVTDRHSVAAFAQAAVDTWG 80 (264)
T ss_dssp TTCEEEESSTTSHHHHHHHHHHHHTTCEEEEEESSH--HHHHHHHHHHHHTTCEEEEEECCTTCHHHHHHHHHHHHHHHS
T ss_pred CCCEEEEeCCccHHHHHHHHHHHHCCCEEEEEECCH--HHHHHHHHHHHhcCCcEEEEEcCCCCHHHHHHHHHHHHHHcC
Confidence 56789999988763 3444556699999999985 56666666666666677777777665321 000 13
Q ss_pred CCcEEEEcCCcC
Q 026274 139 NPNIILGADVFY 150 (241)
Q Consensus 139 ~fDlIl~~dvly 150 (241)
+.|+++.+--+.
T Consensus 81 ~iD~lVnnAG~~ 92 (264)
T 3tfo_A 81 RIDVLVNNAGVM 92 (264)
T ss_dssp CCCEEEECCCCC
T ss_pred CCCEEEECCCCC
Confidence 689998775544
|
| >1boo_A Protein (N-4 cytosine-specific methyltransferase PVU II); type II DNA-(cytosine N4) methyltransferase, amino methylation, selenomethionine; HET: SAH; 2.80A {Proteus vulgaris} SCOP: c.66.1.11 | Back alignment and structure |
|---|
Probab=84.27 E-value=1.5 Score=37.42 Aligned_cols=63 Identities=10% Similarity=0.148 Sum_probs=40.3
Q ss_pred CCCCCcEEEEcCCcCCCc--------------cHHHHHHHHHHHhhcCCCeEEEEEeecc--C------c--hhHHHHHH
Q 026274 136 FDLNPNIILGADVFYDAS--------------AFDDLFATITYLLQSSPGSVFITTYHNR--S------G--HHLIEFLM 191 (241)
Q Consensus 136 ~~~~fDlIl~~dvly~~~--------------~~~~ll~~~~~lL~~~~~~~~~~~~~~r--~------~--~~~~~~~~ 191 (241)
.+++||+|++.++..... .....++.+.++|+ ++|.+++.+..+ . . ......++
T Consensus 30 ~~~svDlI~tDPPY~~~~~~~y~~~~~~~~~~~l~~~l~~~~rvLk--~~G~i~i~~~d~~~~g~~~~~~~~~~~i~~~~ 107 (323)
T 1boo_A 30 PEESISLVMTSPPFALQRKKEYGNLEQHEYVDWFLSFAKVVNKKLK--PDGSFVVDFGGAYMKGVPARSIYNFRVLIRMI 107 (323)
T ss_dssp CSSCEEEEEECCCCSSSCSCSSCSCHHHHHHHHHHHHHHHHHHHEE--EEEEEEEEECCCEETTEEEECCHHHHHHHHHH
T ss_pred CCCCeeEEEECCCCCCCcccccCCcCHHHHHHHHHHHHHHHHHHCc--CCcEEEEEECCEecCCCcccccchHHHHHHHH
Confidence 356899999876654331 47788888999998 567666655443 1 1 11222345
Q ss_pred HHcCCEEEE
Q 026274 192 VKWGLKCVK 200 (241)
Q Consensus 192 ~~~g~~~~~ 200 (241)
+..||....
T Consensus 108 ~~~Gf~~~~ 116 (323)
T 1boo_A 108 DEVGFFLAE 116 (323)
T ss_dssp HTTCCEEEE
T ss_pred HhCCCEEEE
Confidence 788997754
|
| >1rjw_A ADH-HT, alcohol dehydrogenase; oxidoreductase, NAD, zinc, tetramer; 2.35A {Geobacillus stearothermophilus} SCOP: b.35.1.2 c.2.1.1 PDB: 3pii_A | Back alignment and structure |
|---|
Probab=84.09 E-value=3.1 Score=35.44 Aligned_cols=87 Identities=16% Similarity=0.009 Sum_probs=50.2
Q ss_pred CCCCCCeEEEecCC-CCHHHHHHHH-hCCEEEEEcCCCcHHHHHHHHHHHHHcCCceEEEEeecCCCC--cCcC--CCCC
Q 026274 67 YRFSGANVVELGAG-TSLPGLVAAK-VGSNVTLTDDSNRIEVLKNMRRVCEMNKLNCRVMGLTWGFLD--ASIF--DLNP 140 (241)
Q Consensus 67 ~~~~~~~VLElGcG-tGl~sl~la~-~g~~V~~tD~~~~~~~l~~~~~n~~~n~~~~~~~~l~w~~~~--~~~~--~~~f 140 (241)
....|.+||-+|+| .|+..+.+++ .|++|+++|.++ +-++.+++ .+... .++..+.. .... ...+
T Consensus 161 ~~~~g~~VlV~GaG~vG~~~~~~a~~~Ga~Vi~~~~~~--~~~~~~~~----lGa~~---~~d~~~~~~~~~~~~~~~~~ 231 (339)
T 1rjw_A 161 GAKPGEWVAIYGIGGLGHVAVQYAKAMGLNVVAVDIGD--EKLELAKE----LGADL---VVNPLKEDAAKFMKEKVGGV 231 (339)
T ss_dssp TCCTTCEEEEECCSTTHHHHHHHHHHTTCEEEEECSCH--HHHHHHHH----TTCSE---EECTTTSCHHHHHHHHHSSE
T ss_pred CCCCCCEEEEECCCHHHHHHHHHHHHcCCEEEEEeCCH--HHHHHHHH----CCCCE---EecCCCccHHHHHHHHhCCC
Confidence 45578899999996 4666666665 588999999985 45554442 23321 12332211 0000 0368
Q ss_pred cEEEEcCCcCCCccHHHHHHHHHHHhhc
Q 026274 141 NIILGADVFYDASAFDDLFATITYLLQS 168 (241)
Q Consensus 141 DlIl~~dvly~~~~~~~ll~~~~~lL~~ 168 (241)
|+|+-+- .....++...+++++
T Consensus 232 d~vid~~------g~~~~~~~~~~~l~~ 253 (339)
T 1rjw_A 232 HAAVVTA------VSKPAFQSAYNSIRR 253 (339)
T ss_dssp EEEEESS------CCHHHHHHHHHHEEE
T ss_pred CEEEECC------CCHHHHHHHHHHhhc
Confidence 8887431 223456667777773
|
| >3fpc_A NADP-dependent alcohol dehydrogenase; oxydoreductase, bacterial alcohol dehydrogenase, domain exchange, chimera, metal-binding; 1.40A {Thermoanaerobacter brockii} PDB: 2nvb_A* 1ykf_A* 1bxz_A* 3ftn_A 3fsr_A 1y9a_A* 2oui_A* 3fpl_A* 1jqb_A 1kev_A* 1ped_A 2b83_A | Back alignment and structure |
|---|
Probab=83.98 E-value=2.2 Score=36.58 Aligned_cols=47 Identities=15% Similarity=0.191 Sum_probs=33.0
Q ss_pred hccCCCCCCeEEEecCC-CCHHHHHHHH-hCC-EEEEEcCCCcHHHHHHHHH
Q 026274 64 QQRYRFSGANVVELGAG-TSLPGLVAAK-VGS-NVTLTDDSNRIEVLKNMRR 112 (241)
Q Consensus 64 ~~~~~~~~~~VLElGcG-tGl~sl~la~-~g~-~V~~tD~~~~~~~l~~~~~ 112 (241)
......+|.+||=+|+| .|++.+.+|+ .|+ +|+++|.++ +-++.+++
T Consensus 160 ~~~~~~~g~~VlV~GaG~vG~~a~qla~~~Ga~~Vi~~~~~~--~~~~~~~~ 209 (352)
T 3fpc_A 160 ELANIKLGDTVCVIGIGPVGLMSVAGANHLGAGRIFAVGSRK--HCCDIALE 209 (352)
T ss_dssp HHTTCCTTCCEEEECCSHHHHHHHHHHHTTTCSSEEEECCCH--HHHHHHHH
T ss_pred HhcCCCCCCEEEEECCCHHHHHHHHHHHHcCCcEEEEECCCH--HHHHHHHH
Confidence 33445678899999987 3666677776 488 899999985 34554443
|
| >3nx4_A Putative oxidoreductase; csgid, structural genomics, center for struc genomics of infectious diseases, PSI, protein structure INI; HET: MSE NAP; 1.90A {Salmonella enterica subsp} PDB: 1o89_A 1o8c_A* | Back alignment and structure |
|---|
Probab=83.97 E-value=2.1 Score=36.13 Aligned_cols=85 Identities=13% Similarity=0.120 Sum_probs=49.3
Q ss_pred eEEEecC-C-CCHHHHHHHH-hCCEEEEEcCCCcHHHHHHHHHHHHHcCCceEEEEeecCCC--CcCcCCCCCcEEEEcC
Q 026274 73 NVVELGA-G-TSLPGLVAAK-VGSNVTLTDDSNRIEVLKNMRRVCEMNKLNCRVMGLTWGFL--DASIFDLNPNIILGAD 147 (241)
Q Consensus 73 ~VLElGc-G-tGl~sl~la~-~g~~V~~tD~~~~~~~l~~~~~n~~~n~~~~~~~~l~w~~~--~~~~~~~~fDlIl~~d 147 (241)
+||=.|| | .|+..+.+|+ .|++|++++.++ +-++.+++ .+....+ +-.+. ........+|+++-+
T Consensus 149 ~VlV~Ga~G~vG~~aiqla~~~Ga~Vi~~~~~~--~~~~~~~~----lGa~~vi---~~~~~~~~~~~~~~~~d~v~d~- 218 (324)
T 3nx4_A 149 EVVVTGASGGVGSTAVALLHKLGYQVAAVSGRE--STHGYLKS----LGANRIL---SRDEFAESRPLEKQLWAGAIDT- 218 (324)
T ss_dssp CEEESSTTSHHHHHHHHHHHHTTCCEEEEESCG--GGHHHHHH----HTCSEEE---EGGGSSCCCSSCCCCEEEEEES-
T ss_pred eEEEECCCcHHHHHHHHHHHHcCCEEEEEeCCH--HHHHHHHh----cCCCEEE---ecCCHHHHHhhcCCCccEEEEC-
Confidence 3999997 3 6777777777 488999999986 34454443 2433211 22111 112223478887732
Q ss_pred CcCCCccHHHHHHHHHHHhhcCCCeEEE
Q 026274 148 VFYDASAFDDLFATITYLLQSSPGSVFI 175 (241)
Q Consensus 148 vly~~~~~~~ll~~~~~lL~~~~~~~~~ 175 (241)
+ . .+.++...++++ ++|.++
T Consensus 219 -~----g-~~~~~~~~~~l~--~~G~iv 238 (324)
T 3nx4_A 219 -V----G-DKVLAKVLAQMN--YGGCVA 238 (324)
T ss_dssp -S----C-HHHHHHHHHTEE--EEEEEE
T ss_pred -C----C-cHHHHHHHHHHh--cCCEEE
Confidence 2 1 236777777887 445443
|
| >3gms_A Putative NADPH:quinone reductase; structural genomics, putative quinone oxidoreductase, unknown function, PSI-2; 1.76A {Bacillus thuringiensis} | Back alignment and structure |
|---|
Probab=83.92 E-value=0.86 Score=38.97 Aligned_cols=47 Identities=6% Similarity=-0.017 Sum_probs=33.4
Q ss_pred hccCCCCCCeEEEecCC--CCHHHHHHHH-hCCEEEEEcCCCcHHHHHHHHH
Q 026274 64 QQRYRFSGANVVELGAG--TSLPGLVAAK-VGSNVTLTDDSNRIEVLKNMRR 112 (241)
Q Consensus 64 ~~~~~~~~~~VLElGcG--tGl~sl~la~-~g~~V~~tD~~~~~~~l~~~~~ 112 (241)
......+|.+||-.||| .|+..+.+++ .|++|+++|.++. -++.+++
T Consensus 138 ~~~~~~~g~~VlV~Ga~g~iG~~~~~~a~~~Ga~Vi~~~~~~~--~~~~~~~ 187 (340)
T 3gms_A 138 ETLNLQRNDVLLVNACGSAIGHLFAQLSQILNFRLIAVTRNNK--HTEELLR 187 (340)
T ss_dssp TTSCCCTTCEEEESSTTSHHHHHHHHHHHHHTCEEEEEESSST--THHHHHH
T ss_pred HhcccCCCCEEEEeCCccHHHHHHHHHHHHcCCEEEEEeCCHH--HHHHHHh
Confidence 33455678999999998 4566666665 5999999999863 4454443
|
| >2h6e_A ADH-4, D-arabinose 1-dehydrogenase; rossman fold, medium chain alcohol dehydrogenase, oxidoreduc; 1.80A {Sulfolobus solfataricus} | Back alignment and structure |
|---|
Probab=83.86 E-value=2.4 Score=36.14 Aligned_cols=86 Identities=12% Similarity=0.013 Sum_probs=50.5
Q ss_pred CCCCCCeEEEecCC-CCHHHHHHHH-h--CCEEEEEcCCCcHHHHHHHHHHHHHcCCceEEEEeecCC-C--CcCcC-CC
Q 026274 67 YRFSGANVVELGAG-TSLPGLVAAK-V--GSNVTLTDDSNRIEVLKNMRRVCEMNKLNCRVMGLTWGF-L--DASIF-DL 138 (241)
Q Consensus 67 ~~~~~~~VLElGcG-tGl~sl~la~-~--g~~V~~tD~~~~~~~l~~~~~n~~~n~~~~~~~~l~w~~-~--~~~~~-~~ 138 (241)
.. +|.+||-+|+| .|+..+.+|+ . |++|+++|.++ +-++.+++ .+... + ++..+ . ..... ..
T Consensus 168 ~~-~g~~VlV~GaG~vG~~aiqlak~~~~Ga~Vi~~~~~~--~~~~~~~~----lGa~~-v--i~~~~~~~~~~~~~~g~ 237 (344)
T 2h6e_A 168 KF-AEPVVIVNGIGGLAVYTIQILKALMKNITIVGISRSK--KHRDFALE----LGADY-V--SEMKDAESLINKLTDGL 237 (344)
T ss_dssp TC-SSCEEEEECCSHHHHHHHHHHHHHCTTCEEEEECSCH--HHHHHHHH----HTCSE-E--ECHHHHHHHHHHHHTTC
T ss_pred CC-CCCEEEEECCCHHHHHHHHHHHHhcCCCEEEEEeCCH--HHHHHHHH----hCCCE-E--eccccchHHHHHhhcCC
Confidence 45 88999999997 3666666666 5 89999999985 35555543 23321 1 12111 0 00111 22
Q ss_pred CCcEEEEcCCcCCCccHHHHHHHHHHHhhc
Q 026274 139 NPNIILGADVFYDASAFDDLFATITYLLQS 168 (241)
Q Consensus 139 ~fDlIl~~dvly~~~~~~~ll~~~~~lL~~ 168 (241)
.+|+|+-+ . .....++...+++++
T Consensus 238 g~D~vid~--~----g~~~~~~~~~~~l~~ 261 (344)
T 2h6e_A 238 GASIAIDL--V----GTEETTYNLGKLLAQ 261 (344)
T ss_dssp CEEEEEES--S----CCHHHHHHHHHHEEE
T ss_pred CccEEEEC--C----CChHHHHHHHHHhhc
Confidence 68998843 1 223466777778873
|
| >3pwz_A Shikimate dehydrogenase 3; alpha-beta, oxidoreductase; 1.71A {Pseudomonas putida} | Back alignment and structure |
|---|
Probab=83.70 E-value=5.3 Score=33.28 Aligned_cols=78 Identities=14% Similarity=0.086 Sum_probs=45.2
Q ss_pred HHhccCCCCCCeEEEecCC-CC-HHHHHHHHhCC-EEEEEcCCCcHHHHHHHHHHHHHcCCceEEEEeecCCCCcCcCCC
Q 026274 62 VWQQRYRFSGANVVELGAG-TS-LPGLVAAKVGS-NVTLTDDSNRIEVLKNMRRVCEMNKLNCRVMGLTWGFLDASIFDL 138 (241)
Q Consensus 62 l~~~~~~~~~~~VLElGcG-tG-l~sl~la~~g~-~V~~tD~~~~~~~l~~~~~n~~~n~~~~~~~~l~w~~~~~~~~~~ 138 (241)
|.......+++++|=+|+| .| .+...+++.|+ +|+.++.++ +-.+.+.+.+.. ..+ ....|.+.. ..
T Consensus 111 L~~~~~~l~~k~~lvlGaGg~~~aia~~L~~~G~~~v~i~~R~~--~~a~~la~~~~~--~~~--~~~~~~~l~----~~ 180 (272)
T 3pwz_A 111 EENLGEPLRNRRVLLLGAGGAVRGALLPFLQAGPSELVIANRDM--AKALALRNELDH--SRL--RISRYEALE----GQ 180 (272)
T ss_dssp HTTSCCCCTTSEEEEECCSHHHHHHHHHHHHTCCSEEEEECSCH--HHHHHHHHHHCC--TTE--EEECSGGGT----TC
T ss_pred HHHcCCCccCCEEEEECccHHHHHHHHHHHHcCCCEEEEEeCCH--HHHHHHHHHhcc--CCe--eEeeHHHhc----cc
Confidence 4333345678999999998 22 23444566786 999999985 333333333322 222 334454432 14
Q ss_pred CCcEEEEcCCc
Q 026274 139 NPNIILGADVF 149 (241)
Q Consensus 139 ~fDlIl~~dvl 149 (241)
.+|+|+.+=..
T Consensus 181 ~~DivInaTp~ 191 (272)
T 3pwz_A 181 SFDIVVNATSA 191 (272)
T ss_dssp CCSEEEECSSG
T ss_pred CCCEEEECCCC
Confidence 79999976443
|
| >1e3i_A Alcohol dehydrogenase, class II; HET: NAD; 2.08A {Mus musculus} SCOP: b.35.1.2 c.2.1.1 PDB: 1e3e_A* 1e3l_A* 3cos_A* | Back alignment and structure |
|---|
Probab=83.63 E-value=1 Score=39.00 Aligned_cols=97 Identities=13% Similarity=0.103 Sum_probs=54.0
Q ss_pred cCCCCCCeEEEecCC-CCHHHHHHHH-hCC-EEEEEcCCCcHHHHHHHHHHHHHcCCceEEEEeecCCCCc-------Cc
Q 026274 66 RYRFSGANVVELGAG-TSLPGLVAAK-VGS-NVTLTDDSNRIEVLKNMRRVCEMNKLNCRVMGLTWGFLDA-------SI 135 (241)
Q Consensus 66 ~~~~~~~~VLElGcG-tGl~sl~la~-~g~-~V~~tD~~~~~~~l~~~~~n~~~n~~~~~~~~l~w~~~~~-------~~ 135 (241)
.....|.+||=+||| .|++.+.+|+ .|+ +|+++|.++. -++.+++ .+... .++..+... ..
T Consensus 191 ~~~~~g~~VlV~GaG~vG~~aiqlak~~Ga~~Vi~~~~~~~--~~~~a~~----lGa~~---vi~~~~~~~~~~~~v~~~ 261 (376)
T 1e3i_A 191 AKVTPGSTCAVFGLGCVGLSAIIGCKIAGASRIIAIDINGE--KFPKAKA----LGATD---CLNPRELDKPVQDVITEL 261 (376)
T ss_dssp SCCCTTCEEEEECCSHHHHHHHHHHHHTTCSEEEEECSCGG--GHHHHHH----TTCSE---EECGGGCSSCHHHHHHHH
T ss_pred cCCCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCCHH--HHHHHHH----hCCcE---EEccccccchHHHHHHHH
Confidence 345578899999987 4666666666 488 8999999862 4444432 34321 122221000 01
Q ss_pred CCCCCcEEEEcCCcCCCccHHHHHHHHHHHhhcCCCeEEEEE
Q 026274 136 FDLNPNIILGADVFYDASAFDDLFATITYLLQSSPGSVFITT 177 (241)
Q Consensus 136 ~~~~fDlIl~~dvly~~~~~~~ll~~~~~lL~~~~~~~~~~~ 177 (241)
....+|+|+-+ ......+....++++++.|.+++++
T Consensus 262 ~~~g~Dvvid~------~G~~~~~~~~~~~l~~~~G~iv~~G 297 (376)
T 1e3i_A 262 TAGGVDYSLDC------AGTAQTLKAAVDCTVLGWGSCTVVG 297 (376)
T ss_dssp HTSCBSEEEES------SCCHHHHHHHHHTBCTTTCEEEECC
T ss_pred hCCCccEEEEC------CCCHHHHHHHHHHhhcCCCEEEEEC
Confidence 11368888732 2224566677778774214444444
|
| >3imf_A Short chain dehydrogenase; structural genomics, infectious D center for structural genomics of infectious diseases, oxidoreductase, csgid; HET: MSE; 1.99A {Bacillus anthracis str} | Back alignment and structure |
|---|
Probab=83.62 E-value=3.2 Score=33.76 Aligned_cols=80 Identities=15% Similarity=0.127 Sum_probs=51.9
Q ss_pred CCCCCeEEEecCCCCH---HHHHHHHhCCEEEEEcCCCcHHHHHHHHHHHHHcCCceEEEEeecCCCCc--CcCC-----
Q 026274 68 RFSGANVVELGAGTSL---PGLVAAKVGSNVTLTDDSNRIEVLKNMRRVCEMNKLNCRVMGLTWGFLDA--SIFD----- 137 (241)
Q Consensus 68 ~~~~~~VLElGcGtGl---~sl~la~~g~~V~~tD~~~~~~~l~~~~~n~~~n~~~~~~~~l~w~~~~~--~~~~----- 137 (241)
..+++++|=-|++.|+ ++..+++.|++|+++|.++ +.++.+...+...+..+.+...|..+... ...+
T Consensus 3 ~l~~k~vlVTGas~gIG~aia~~l~~~G~~V~~~~r~~--~~~~~~~~~~~~~~~~~~~~~~Dv~~~~~v~~~~~~~~~~ 80 (257)
T 3imf_A 3 AMKEKVVIITGGSSGMGKGMATRFAKEGARVVITGRTK--EKLEEAKLEIEQFPGQILTVQMDVRNTDDIQKMIEQIDEK 80 (257)
T ss_dssp TTTTCEEEETTTTSHHHHHHHHHHHHTTCEEEEEESCH--HHHHHHHHHHCCSTTCEEEEECCTTCHHHHHHHHHHHHHH
T ss_pred CCCCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEeCCH--HHHHHHHHHHHhcCCcEEEEEccCCCHHHHHHHHHHHHHH
Confidence 3578899999987663 3444556699999999995 46666655555555567777777665321 0011
Q ss_pred -CCCcEEEEcCCc
Q 026274 138 -LNPNIILGADVF 149 (241)
Q Consensus 138 -~~fDlIl~~dvl 149 (241)
.+.|+++.+--+
T Consensus 81 ~g~id~lv~nAg~ 93 (257)
T 3imf_A 81 FGRIDILINNAAG 93 (257)
T ss_dssp HSCCCEEEECCCC
T ss_pred cCCCCEEEECCCC
Confidence 368998876544
|
| >3pvc_A TRNA 5-methylaminomethyl-2-thiouridine biosynthes bifunctional protein MNMC; structural genomics, PSI-biology; HET: FAD; 2.31A {Yersinia pestis} PDB: 3sgl_A* | Back alignment and structure |
|---|
Probab=83.35 E-value=5.2 Score=37.65 Aligned_cols=123 Identities=15% Similarity=0.178 Sum_probs=66.6
Q ss_pred CeEEEecCCCCHHHHHHHHh------------C--CEEEEEcCCCc-HHHHHHHH-----------HHHHHcCCc-eEE-
Q 026274 72 ANVVELGAGTSLPGLVAAKV------------G--SNVTLTDDSNR-IEVLKNMR-----------RVCEMNKLN-CRV- 123 (241)
Q Consensus 72 ~~VLElGcGtGl~sl~la~~------------g--~~V~~tD~~~~-~~~l~~~~-----------~n~~~n~~~-~~~- 123 (241)
-+|+|+|-|+|+..+.+.+. . .+++.++..|. .+.+..+- +-+..-... ..+
T Consensus 60 ~~i~e~gfG~G~n~l~~~~~~~~~~~~~p~~~~~~l~~~s~E~~p~~~~~l~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 139 (689)
T 3pvc_A 60 CIFAETGFGTGLNFLTLWRDFALFRQQSPNATLRRLHYISFEKYPLHVADLASAHARWPELASFAEQLRAQWPLPLAGCH 139 (689)
T ss_dssp EEEEEECCTTSHHHHHHHHHHHHHHHHCTTSSCCEEEEEEEESSCCCHHHHHHHHTTCGGGHHHHHHHHHTCCCCCSEEE
T ss_pred eEEEEecCchHHHHHHHHHHHHHhhhhCCCCCCceEEEEEeeCCCCCHHHHHHHHHhCcchhHHHHHHHHhCcccCCCce
Confidence 48999999999888877653 1 26899998551 22232211 111111000 011
Q ss_pred ----------EEeecCCCCc---CcC---CCCCcEEEEcCCc---CCCc-cHHHHHHHHHHHhhcCCCeEEEEEeeccCc
Q 026274 124 ----------MGLTWGFLDA---SIF---DLNPNIILGADVF---YDAS-AFDDLFATITYLLQSSPGSVFITTYHNRSG 183 (241)
Q Consensus 124 ----------~~l~w~~~~~---~~~---~~~fDlIl~~dvl---y~~~-~~~~ll~~~~~lL~~~~~~~~~~~~~~r~~ 183 (241)
..+-+++..+ ... ...+|.++. |.+ ++++ --..++..+.++++ +|+. +.++..
T Consensus 140 r~~~~~~~~~l~l~~gd~~~~l~~~~~~~~~~~da~fl-D~f~p~~np~~w~~~~~~~l~~~~~--~g~~-~~t~~~--- 212 (689)
T 3pvc_A 140 RILLADGAITLDLWFGDVNTLLPTLDDSLNNQVDAWFL-DGFAPAKNPDMWNEQLFNAMARMTR--PGGT-FSTFTA--- 212 (689)
T ss_dssp EEEETTTTEEEEEEESCHHHHGGGCCGGGTTCEEEEEE-CSSCC--CCTTCSHHHHHHHHHHEE--EEEE-EEESCC---
T ss_pred EEEecCCcEEEEEEccCHHHHHhhcccccCCceeEEEE-CCCCCCCChhhhhHHHHHHHHHHhC--CCCE-EEeccC---
Confidence 1233343221 111 357898885 222 1221 23678888899887 4443 444433
Q ss_pred hhHHHHHHHHcCCEEEEE
Q 026274 184 HHLIEFLMVKWGLKCVKL 201 (241)
Q Consensus 184 ~~~~~~~~~~~g~~~~~i 201 (241)
....+..+.+.||.+..+
T Consensus 213 ~~~vr~~l~~aGf~~~~~ 230 (689)
T 3pvc_A 213 AGFVRRGLQQAGFNVTKV 230 (689)
T ss_dssp CHHHHHHHHHTTCEEEEE
T ss_pred cHHHHHHHHhCCeEEEec
Confidence 234566677899998876
|
| >3uko_A Alcohol dehydrogenase class-3; alcohol dehydrogenase III, homodimer, reduction of GSNO, NAD binding, oxidoreductase; HET: NAD SO4; 1.40A {Arabidopsis thaliana} | Back alignment and structure |
|---|
Probab=83.21 E-value=2 Score=37.29 Aligned_cols=99 Identities=15% Similarity=0.079 Sum_probs=56.3
Q ss_pred hccCCCCCCeEEEecCC-CCHHHHHHHH-hCC-EEEEEcCCCcHHHHHHHHHHHHHcCCceEEEEeecCCCCc-------
Q 026274 64 QQRYRFSGANVVELGAG-TSLPGLVAAK-VGS-NVTLTDDSNRIEVLKNMRRVCEMNKLNCRVMGLTWGFLDA------- 133 (241)
Q Consensus 64 ~~~~~~~~~~VLElGcG-tGl~sl~la~-~g~-~V~~tD~~~~~~~l~~~~~n~~~n~~~~~~~~l~w~~~~~------- 133 (241)
+.....+|.+||=+||| .|++.+.+|+ .|+ +|+++|.++. -++.+++ .+... .++..+...
T Consensus 187 ~~~~~~~g~~VlV~GaG~vG~~a~q~a~~~Ga~~Vi~~~~~~~--~~~~a~~----lGa~~---vi~~~~~~~~~~~~i~ 257 (378)
T 3uko_A 187 NTAKVEPGSNVAIFGLGTVGLAVAEGAKTAGASRIIGIDIDSK--KYETAKK----FGVNE---FVNPKDHDKPIQEVIV 257 (378)
T ss_dssp TTTCCCTTCCEEEECCSHHHHHHHHHHHHHTCSCEEEECSCTT--HHHHHHT----TTCCE---EECGGGCSSCHHHHHH
T ss_pred hhcCCCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCCHH--HHHHHHH----cCCcE---EEccccCchhHHHHHH
Confidence 43455678899999987 4666666666 488 8999998863 4444432 33322 122221000
Q ss_pred CcCCCCCcEEEEcCCcCCCccHHHHHHHHHHHhhcCCCeEEEEE
Q 026274 134 SIFDLNPNIILGADVFYDASAFDDLFATITYLLQSSPGSVFITT 177 (241)
Q Consensus 134 ~~~~~~fDlIl~~dvly~~~~~~~ll~~~~~lL~~~~~~~~~~~ 177 (241)
......+|+|+-+ ..-...++...++++++.|.+++++
T Consensus 258 ~~~~gg~D~vid~------~g~~~~~~~~~~~l~~g~G~iv~~G 295 (378)
T 3uko_A 258 DLTDGGVDYSFEC------IGNVSVMRAALECCHKGWGTSVIVG 295 (378)
T ss_dssp HHTTSCBSEEEEC------SCCHHHHHHHHHTBCTTTCEEEECS
T ss_pred HhcCCCCCEEEEC------CCCHHHHHHHHHHhhccCCEEEEEc
Confidence 1112368888832 2234566777778874324445444
|
| >3o8q_A Shikimate 5-dehydrogenase I alpha; structural genomics, center for structural genomics of infec diseases, csgid; HET: EPE; 1.45A {Vibrio cholerae biovar el tor} PDB: 3sef_A* 3pgj_A* 3o8q_B* | Back alignment and structure |
|---|
Probab=83.16 E-value=9.2 Score=31.95 Aligned_cols=80 Identities=13% Similarity=0.153 Sum_probs=46.7
Q ss_pred HHHHHhccCCCCCCeEEEecCCCC---HHHHHHHHhCC-EEEEEcCCCcHHHHHHHHHHHHHcCCceEEEEeecCCCCcC
Q 026274 59 AEYVWQQRYRFSGANVVELGAGTS---LPGLVAAKVGS-NVTLTDDSNRIEVLKNMRRVCEMNKLNCRVMGLTWGFLDAS 134 (241)
Q Consensus 59 ~~~l~~~~~~~~~~~VLElGcGtG---l~sl~la~~g~-~V~~tD~~~~~~~l~~~~~n~~~n~~~~~~~~l~w~~~~~~ 134 (241)
.+-|.......+++++|=+|+| | .+...+++.|+ +|+..+.++ +-.+.+.+.....+ .+ ....|.+..
T Consensus 114 ~~~L~~~~~~l~~k~vlvlGaG-g~g~aia~~L~~~G~~~v~v~~R~~--~~a~~la~~~~~~~-~~--~~~~~~~l~-- 185 (281)
T 3o8q_A 114 VQDLLAQQVLLKGATILLIGAG-GAARGVLKPLLDQQPASITVTNRTF--AKAEQLAELVAAYG-EV--KAQAFEQLK-- 185 (281)
T ss_dssp HHHHHHTTCCCTTCEEEEECCS-HHHHHHHHHHHTTCCSEEEEEESSH--HHHHHHHHHHGGGS-CE--EEEEGGGCC--
T ss_pred HHHHHHhCCCccCCEEEEECch-HHHHHHHHHHHhcCCCeEEEEECCH--HHHHHHHHHhhccC-Ce--eEeeHHHhc--
Confidence 3334444445688999999998 4 23344555686 899999985 34444443333222 23 334555431
Q ss_pred cCCCCCcEEEEcCCc
Q 026274 135 IFDLNPNIILGADVF 149 (241)
Q Consensus 135 ~~~~~fDlIl~~dvl 149 (241)
..+|+|+.+=..
T Consensus 186 ---~~aDiIInaTp~ 197 (281)
T 3o8q_A 186 ---QSYDVIINSTSA 197 (281)
T ss_dssp ---SCEEEEEECSCC
T ss_pred ---CCCCEEEEcCcC
Confidence 468999876443
|
| >1pqw_A Polyketide synthase; rossmann fold, dimer, structural genomics, PSI, protein STRU initiative; 2.66A {Mycobacterium tuberculosis} SCOP: c.2.1.1 | Back alignment and structure |
|---|
Probab=83.08 E-value=1.7 Score=33.80 Aligned_cols=92 Identities=16% Similarity=0.163 Sum_probs=50.6
Q ss_pred cCCCCCCeEEEecCC--CCHHHHHHH-HhCCEEEEEcCCCcHHHHHHHHHHHHHcCCceEEEEeecCCCCc-----C-cC
Q 026274 66 RYRFSGANVVELGAG--TSLPGLVAA-KVGSNVTLTDDSNRIEVLKNMRRVCEMNKLNCRVMGLTWGFLDA-----S-IF 136 (241)
Q Consensus 66 ~~~~~~~~VLElGcG--tGl~sl~la-~~g~~V~~tD~~~~~~~l~~~~~n~~~n~~~~~~~~l~w~~~~~-----~-~~ 136 (241)
....++++||-.|++ .|.....++ ..|++|+++|.++ +.++.+++ .+... ..+..+... . ..
T Consensus 34 ~~~~~g~~vlV~Ga~ggiG~~~~~~~~~~G~~V~~~~~~~--~~~~~~~~----~g~~~---~~d~~~~~~~~~~~~~~~ 104 (198)
T 1pqw_A 34 GRLSPGERVLIHSATGGVGMAAVSIAKMIGARIYTTAGSD--AKREMLSR----LGVEY---VGDSRSVDFADEILELTD 104 (198)
T ss_dssp SCCCTTCEEEETTTTSHHHHHHHHHHHHHTCEEEEEESSH--HHHHHHHT----TCCSE---EEETTCSTHHHHHHHHTT
T ss_pred hCCCCCCEEEEeeCCChHHHHHHHHHHHcCCEEEEEeCCH--HHHHHHHH----cCCCE---EeeCCcHHHHHHHHHHhC
Confidence 345578899999963 444433333 3599999999984 45544432 23321 133332210 0 01
Q ss_pred CCCCcEEEEcCCcCCCccHHHHHHHHHHHhhcCCCeEEE
Q 026274 137 DLNPNIILGADVFYDASAFDDLFATITYLLQSSPGSVFI 175 (241)
Q Consensus 137 ~~~fDlIl~~dvly~~~~~~~ll~~~~~lL~~~~~~~~~ 175 (241)
...+|+++.+-- ...++...++|+ ++|.++
T Consensus 105 ~~~~D~vi~~~g-------~~~~~~~~~~l~--~~G~~v 134 (198)
T 1pqw_A 105 GYGVDVVLNSLA-------GEAIQRGVQILA--PGGRFI 134 (198)
T ss_dssp TCCEEEEEECCC-------THHHHHHHHTEE--EEEEEE
T ss_pred CCCCeEEEECCc-------hHHHHHHHHHhc--cCCEEE
Confidence 236899985421 245666777777 344433
|
| >2jah_A Clavulanic acid dehydrogenase; short-chain dehydrogenase/reductase, lactamase inhibitor, AN biosynthesis, NADPH, oxidoreductase; HET: MSE NDP; 1.80A {Streptomyces clavuligerus} PDB: 2jap_A* | Back alignment and structure |
|---|
Probab=82.93 E-value=5.9 Score=31.88 Aligned_cols=79 Identities=14% Similarity=0.154 Sum_probs=49.8
Q ss_pred CCCCeEEEecCCCCH---HHHHHHHhCCEEEEEcCCCcHHHHHHHHHHHHHcCCceEEEEeecCCCCc--CcCC------
Q 026274 69 FSGANVVELGAGTSL---PGLVAAKVGSNVTLTDDSNRIEVLKNMRRVCEMNKLNCRVMGLTWGFLDA--SIFD------ 137 (241)
Q Consensus 69 ~~~~~VLElGcGtGl---~sl~la~~g~~V~~tD~~~~~~~l~~~~~n~~~n~~~~~~~~l~w~~~~~--~~~~------ 137 (241)
.+++++|=.|++.|+ +...+++.|++|++++.++ +-++.+.+.+...+..+.+...|..+... ...+
T Consensus 5 l~~k~~lVTGas~gIG~aia~~l~~~G~~V~~~~r~~--~~~~~~~~~l~~~~~~~~~~~~Dv~~~~~~~~~~~~~~~~~ 82 (247)
T 2jah_A 5 LQGKVALITGASSGIGEATARALAAEGAAVAIAARRV--EKLRALGDELTAAGAKVHVLELDVADRQGVDAAVASTVEAL 82 (247)
T ss_dssp TTTCEEEEESCSSHHHHHHHHHHHHTTCEEEEEESCH--HHHHHHHHHHHHTTCCEEEEECCTTCHHHHHHHHHHHHHHH
T ss_pred CCCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEECCH--HHHHHHHHHHHhcCCcEEEEECCCCCHHHHHHHHHHHHHHc
Confidence 567889999977653 2334555699999999984 45555555555445566666776655321 0011
Q ss_pred CCCcEEEEcCCc
Q 026274 138 LNPNIILGADVF 149 (241)
Q Consensus 138 ~~fDlIl~~dvl 149 (241)
++.|+++.+--+
T Consensus 83 g~id~lv~nAg~ 94 (247)
T 2jah_A 83 GGLDILVNNAGI 94 (247)
T ss_dssp SCCSEEEECCCC
T ss_pred CCCCEEEECCCC
Confidence 368998876543
|
| >1e3j_A NADP(H)-dependent ketose reductase; oxidoreductase, fructose reduction; 2.3A {Bemisia argentifolii} SCOP: b.35.1.2 c.2.1.1 | Back alignment and structure |
|---|
Probab=82.89 E-value=2.8 Score=35.90 Aligned_cols=43 Identities=33% Similarity=0.348 Sum_probs=31.2
Q ss_pred CCCCCCeEEEecCC-CCHHHHHHHH-hCCEEEEEcCCCcHHHHHHHH
Q 026274 67 YRFSGANVVELGAG-TSLPGLVAAK-VGSNVTLTDDSNRIEVLKNMR 111 (241)
Q Consensus 67 ~~~~~~~VLElGcG-tGl~sl~la~-~g~~V~~tD~~~~~~~l~~~~ 111 (241)
...+|.+||-.||| .|+..+.+|+ .|++|+++|.++ +-++.++
T Consensus 165 ~~~~g~~VlV~GaG~vG~~a~qla~~~Ga~Vi~~~~~~--~~~~~~~ 209 (352)
T 1e3j_A 165 GVQLGTTVLVIGAGPIGLVSVLAAKAYGAFVVCTARSP--RRLEVAK 209 (352)
T ss_dssp TCCTTCEEEEECCSHHHHHHHHHHHHTTCEEEEEESCH--HHHHHHH
T ss_pred CCCCCCEEEEECCCHHHHHHHHHHHHcCCEEEEEcCCH--HHHHHHH
Confidence 45578899999987 3666666666 588999999985 4555444
|
| >1cdo_A Alcohol dehydrogenase; oxidoreductase, oxidoreductase (CH-OH(D)-NAD(A)); HET: NAD; 2.05A {Gadus callarias} SCOP: b.35.1.2 c.2.1.1 | Back alignment and structure |
|---|
Probab=82.63 E-value=1.2 Score=38.57 Aligned_cols=97 Identities=8% Similarity=0.015 Sum_probs=54.3
Q ss_pred cCCCCCCeEEEecCC-CCHHHHHHHH-hCC-EEEEEcCCCcHHHHHHHHHHHHHcCCceEEEEeecCCCCc-------Cc
Q 026274 66 RYRFSGANVVELGAG-TSLPGLVAAK-VGS-NVTLTDDSNRIEVLKNMRRVCEMNKLNCRVMGLTWGFLDA-------SI 135 (241)
Q Consensus 66 ~~~~~~~~VLElGcG-tGl~sl~la~-~g~-~V~~tD~~~~~~~l~~~~~n~~~n~~~~~~~~l~w~~~~~-------~~ 135 (241)
.....|.+||-+|+| .|+..+.+|+ .|+ +|+++|.++. -++.+++ .+... .++..+... ..
T Consensus 188 ~~~~~g~~VlV~GaG~vG~~a~qla~~~Ga~~Vi~~~~~~~--~~~~~~~----lGa~~---vi~~~~~~~~~~~~~~~~ 258 (374)
T 1cdo_A 188 AKVEPGSTCAVFGLGAVGLAAVMGCHSAGAKRIIAVDLNPD--KFEKAKV----FGATD---FVNPNDHSEPISQVLSKM 258 (374)
T ss_dssp TCCCTTCEEEEECCSHHHHHHHHHHHHTTCSEEEEECSCGG--GHHHHHH----TTCCE---EECGGGCSSCHHHHHHHH
T ss_pred cCCCCCCEEEEECCCHHHHHHHHHHHHcCCCEEEEEcCCHH--HHHHHHH----hCCce---EEeccccchhHHHHHHHH
Confidence 345578899999986 4666666666 488 8999999862 4444432 34321 123221000 01
Q ss_pred CCCCCcEEEEcCCcCCCccHHHHHHHHHHHhhcCCCeEEEEE
Q 026274 136 FDLNPNIILGADVFYDASAFDDLFATITYLLQSSPGSVFITT 177 (241)
Q Consensus 136 ~~~~fDlIl~~dvly~~~~~~~ll~~~~~lL~~~~~~~~~~~ 177 (241)
....+|+|+-+ ......+....++++++.|.++.++
T Consensus 259 ~~~g~D~vid~------~g~~~~~~~~~~~l~~~~G~iv~~G 294 (374)
T 1cdo_A 259 TNGGVDFSLEC------VGNVGVMRNALESCLKGWGVSVLVG 294 (374)
T ss_dssp HTSCBSEEEEC------SCCHHHHHHHHHTBCTTTCEEEECS
T ss_pred hCCCCCEEEEC------CCCHHHHHHHHHHhhcCCcEEEEEc
Confidence 11368888732 1224566777778874214444443
|
| >1yb1_A 17-beta-hydroxysteroid dehydrogenase type XI; short chain dehydrogenase, HUM structural genomics, structural genomics consortium, SGC; HET: AE2; 1.95A {Homo sapiens} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=82.48 E-value=6.5 Score=32.09 Aligned_cols=81 Identities=19% Similarity=0.135 Sum_probs=51.3
Q ss_pred CCCCCCeEEEecCCCCHHHHH----HHHhCCEEEEEcCCCcHHHHHHHHHHHHHcCCceEEEEeecCCCCc--CcC----
Q 026274 67 YRFSGANVVELGAGTSLPGLV----AAKVGSNVTLTDDSNRIEVLKNMRRVCEMNKLNCRVMGLTWGFLDA--SIF---- 136 (241)
Q Consensus 67 ~~~~~~~VLElGcGtGl~sl~----la~~g~~V~~tD~~~~~~~l~~~~~n~~~n~~~~~~~~l~w~~~~~--~~~---- 136 (241)
....+++||=.|++.| +|.. +++.|++|+++|.++ +-++.+.+.+...+.++.+...|..+... ...
T Consensus 27 ~~l~~k~vlITGasgg-IG~~la~~L~~~G~~V~~~~r~~--~~~~~~~~~l~~~~~~~~~~~~Dl~~~~~v~~~~~~~~ 103 (272)
T 1yb1_A 27 KSVTGEIVLITGAGHG-IGRLTAYEFAKLKSKLVLWDINK--HGLEETAAKCKGLGAKVHTFVVDCSNREDIYSSAKKVK 103 (272)
T ss_dssp CCCTTCEEEEETTTSH-HHHHHHHHHHHTTCEEEEEESCH--HHHHHHHHHHHHTTCCEEEEECCTTCHHHHHHHHHHHH
T ss_pred cccCCCEEEEECCCch-HHHHHHHHHHHCCCEEEEEEcCH--HHHHHHHHHHHhcCCeEEEEEeeCCCHHHHHHHHHHHH
Confidence 3467889999997654 4444 444589999999985 45555555555555567777777665321 000
Q ss_pred --CCCCcEEEEcCCcC
Q 026274 137 --DLNPNIILGADVFY 150 (241)
Q Consensus 137 --~~~fDlIl~~dvly 150 (241)
-..+|+++.+--+.
T Consensus 104 ~~~g~iD~li~~Ag~~ 119 (272)
T 1yb1_A 104 AEIGDVSILVNNAGVV 119 (272)
T ss_dssp HHTCCCSEEEECCCCC
T ss_pred HHCCCCcEEEECCCcC
Confidence 13689998765543
|
| >2hcy_A Alcohol dehydrogenase 1; tetramer of asymmetric dimers, zinc coordination, intramolec disulfide bonds, oxidoreductase; HET: 8ID; 2.44A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=82.38 E-value=2.4 Score=36.22 Aligned_cols=93 Identities=13% Similarity=0.029 Sum_probs=51.6
Q ss_pred HHHhccCCCCCCeEEEecCC--CCHHHHHHHH-hCCEEEEEcCCCcHHHHHHHHHHHHHcCCceEEEEeecCCCCc----
Q 026274 61 YVWQQRYRFSGANVVELGAG--TSLPGLVAAK-VGSNVTLTDDSNRIEVLKNMRRVCEMNKLNCRVMGLTWGFLDA---- 133 (241)
Q Consensus 61 ~l~~~~~~~~~~~VLElGcG--tGl~sl~la~-~g~~V~~tD~~~~~~~l~~~~~n~~~n~~~~~~~~l~w~~~~~---- 133 (241)
+........+|++||-.|++ .|...+.+++ .|++|+++|.++. -++.+++ .+... .++..+...
T Consensus 160 ~~l~~~~~~~g~~vlV~Ga~ggiG~~~~~~a~~~Ga~V~~~~~~~~--~~~~~~~----~g~~~---~~d~~~~~~~~~~ 230 (347)
T 2hcy_A 160 KALKSANLMAGHWVAISGAAGGLGSLAVQYAKAMGYRVLGIDGGEG--KEELFRS----IGGEV---FIDFTKEKDIVGA 230 (347)
T ss_dssp HHHHTTTCCTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEECSTT--HHHHHHH----TTCCE---EEETTTCSCHHHH
T ss_pred HHHHhcCCCCCCEEEEECCCchHHHHHHHHHHHCCCcEEEEcCCHH--HHHHHHH----cCCce---EEecCccHhHHHH
Confidence 33333345578999999983 5555555554 5899999998863 4444433 23321 234432111
Q ss_pred --CcCCCCCcEEEEcCCcCCCccHHHHHHHHHHHhhc
Q 026274 134 --SIFDLNPNIILGADVFYDASAFDDLFATITYLLQS 168 (241)
Q Consensus 134 --~~~~~~fDlIl~~dvly~~~~~~~ll~~~~~lL~~ 168 (241)
......+|+|+.+- .....++...++|++
T Consensus 231 ~~~~~~~~~D~vi~~~------g~~~~~~~~~~~l~~ 261 (347)
T 2hcy_A 231 VLKATDGGAHGVINVS------VSEAAIEASTRYVRA 261 (347)
T ss_dssp HHHHHTSCEEEEEECS------SCHHHHHHHTTSEEE
T ss_pred HHHHhCCCCCEEEECC------CcHHHHHHHHHHHhc
Confidence 00112688887542 223456666677763
|
| >1h2b_A Alcohol dehydrogenase; oxidoreductase, archaea, hyperthermophIle, zinc; HET: OCA NAJ; 1.62A {Aeropyrum pernix} SCOP: b.35.1.2 c.2.1.1 | Back alignment and structure |
|---|
Probab=82.06 E-value=3.5 Score=35.42 Aligned_cols=44 Identities=27% Similarity=0.277 Sum_probs=31.3
Q ss_pred cCCCCCCeEEEecCC-CCHHHHHHHH-h-CCEEEEEcCCCcHHHHHHHH
Q 026274 66 RYRFSGANVVELGAG-TSLPGLVAAK-V-GSNVTLTDDSNRIEVLKNMR 111 (241)
Q Consensus 66 ~~~~~~~~VLElGcG-tGl~sl~la~-~-g~~V~~tD~~~~~~~l~~~~ 111 (241)
.....|.+||=+|+| .|+..+.+|+ . |++|+++|.++ +-++.++
T Consensus 182 ~~~~~g~~VlV~GaG~vG~~avqlak~~~Ga~Vi~~~~~~--~~~~~~~ 228 (359)
T 1h2b_A 182 RTLYPGAYVAIVGVGGLGHIAVQLLKVMTPATVIALDVKE--EKLKLAE 228 (359)
T ss_dssp TTCCTTCEEEEECCSHHHHHHHHHHHHHCCCEEEEEESSH--HHHHHHH
T ss_pred cCCCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEeCCH--HHHHHHH
Confidence 445578899999996 4555556665 5 89999999985 3444443
|
| >2fzw_A Alcohol dehydrogenase class III CHI chain; S-nitrosoglutathione reductase, glutathione-dependent formaldehyde dehydrogenase, oxidoreductase; HET: NAD; 1.84A {Homo sapiens} SCOP: b.35.1.2 c.2.1.1 PDB: 3qj5_A* 1mc5_A* 2fze_A* 1m6w_A* 1ma0_A* 1mp0_A* 1teh_A* 1m6h_A* | Back alignment and structure |
|---|
Probab=82.02 E-value=1.3 Score=38.25 Aligned_cols=98 Identities=9% Similarity=0.032 Sum_probs=54.3
Q ss_pred ccCCCCCCeEEEecCC-CCHHHHHHHH-hCC-EEEEEcCCCcHHHHHHHHHHHHHcCCceEEEEeecCCCCc-------C
Q 026274 65 QRYRFSGANVVELGAG-TSLPGLVAAK-VGS-NVTLTDDSNRIEVLKNMRRVCEMNKLNCRVMGLTWGFLDA-------S 134 (241)
Q Consensus 65 ~~~~~~~~~VLElGcG-tGl~sl~la~-~g~-~V~~tD~~~~~~~l~~~~~n~~~n~~~~~~~~l~w~~~~~-------~ 134 (241)
......|.+||-+|+| .|++.+.+|+ .|+ +|+++|.++. -++.+++ .+... .++..+... .
T Consensus 185 ~~~~~~g~~VlV~GaG~vG~~avqla~~~Ga~~Vi~~~~~~~--~~~~~~~----lGa~~---vi~~~~~~~~~~~~v~~ 255 (373)
T 2fzw_A 185 TAKLEPGSVCAVFGLGGVGLAVIMGCKVAGASRIIGVDINKD--KFARAKE----FGATE---CINPQDFSKPIQEVLIE 255 (373)
T ss_dssp TTCCCTTCEEEEECCSHHHHHHHHHHHHHTCSEEEEECSCGG--GHHHHHH----HTCSE---EECGGGCSSCHHHHHHH
T ss_pred hcCCCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCCHH--HHHHHHH----cCCce---EeccccccccHHHHHHH
Confidence 3345578899999986 3666666665 588 8999998863 4444442 23321 122221000 1
Q ss_pred cCCCCCcEEEEcCCcCCCccHHHHHHHHHHHhhcCCCeEEEEE
Q 026274 135 IFDLNPNIILGADVFYDASAFDDLFATITYLLQSSPGSVFITT 177 (241)
Q Consensus 135 ~~~~~fDlIl~~dvly~~~~~~~ll~~~~~lL~~~~~~~~~~~ 177 (241)
.....+|+|+-+ ......++...++++++.|.++.++
T Consensus 256 ~~~~g~D~vid~------~g~~~~~~~~~~~l~~~~G~iv~~G 292 (373)
T 2fzw_A 256 MTDGGVDYSFEC------IGNVKVMRAALEACHKGWGVSVVVG 292 (373)
T ss_dssp HTTSCBSEEEEC------SCCHHHHHHHHHTBCTTTCEEEECS
T ss_pred HhCCCCCEEEEC------CCcHHHHHHHHHhhccCCcEEEEEe
Confidence 112368888732 1224556777778874213444443
|
| >4dmm_A 3-oxoacyl-[acyl-carrier-protein] reductase; rossmann fold, oxoacyl-ACP reductase, NADP binding, fatty AC biosynthsis, oxidoreductase; HET: NAP; 2.38A {Synechococcus elongatus} PDB: 4dml_A* | Back alignment and structure |
|---|
Probab=81.84 E-value=5.7 Score=32.55 Aligned_cols=82 Identities=10% Similarity=0.069 Sum_probs=54.0
Q ss_pred CCCCCeEEEecCCCCH---HHHHHHHhCCEEEEEcCCCcHHHHHHHHHHHHHcCCceEEEEeecCCCCc--CcCC-----
Q 026274 68 RFSGANVVELGAGTSL---PGLVAAKVGSNVTLTDDSNRIEVLKNMRRVCEMNKLNCRVMGLTWGFLDA--SIFD----- 137 (241)
Q Consensus 68 ~~~~~~VLElGcGtGl---~sl~la~~g~~V~~tD~~~~~~~l~~~~~n~~~n~~~~~~~~l~w~~~~~--~~~~----- 137 (241)
..+++++|=-|++.|+ ++..+++.|++|++++... .+.++.+.+.+...+..+.+...|..+... ...+
T Consensus 25 ~l~~k~vlVTGas~gIG~aia~~la~~G~~V~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~D~~d~~~v~~~~~~~~~~ 103 (269)
T 4dmm_A 25 PLTDRIALVTGASRGIGRAIALELAAAGAKVAVNYASS-AGAADEVVAAIAAAGGEAFAVKADVSQESEVEALFAAVIER 103 (269)
T ss_dssp TTTTCEEEETTCSSHHHHHHHHHHHHTTCEEEEEESSC-HHHHHHHHHHHHHTTCCEEEEECCTTSHHHHHHHHHHHHHH
T ss_pred CCCCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEeCCC-hHHHHHHHHHHHhcCCcEEEEECCCCCHHHHHHHHHHHHHH
Confidence 3578899999987663 3444566699999999854 356666666666666677777777665421 0011
Q ss_pred -CCCcEEEEcCCcC
Q 026274 138 -LNPNIILGADVFY 150 (241)
Q Consensus 138 -~~fDlIl~~dvly 150 (241)
++.|+++.+--+.
T Consensus 104 ~g~id~lv~nAg~~ 117 (269)
T 4dmm_A 104 WGRLDVLVNNAGIT 117 (269)
T ss_dssp HSCCCEEEECCCCC
T ss_pred cCCCCEEEECCCCC
Confidence 3789998765554
|
| >3ftp_A 3-oxoacyl-[acyl-carrier protein] reductase; ssgcid, 3-ketoacyl-(acyl-carrier- protein) reductase, oxidoreductase, structural genomics; 2.05A {Burkholderia pseudomallei} | Back alignment and structure |
|---|
Probab=81.78 E-value=4.9 Score=33.00 Aligned_cols=81 Identities=15% Similarity=0.100 Sum_probs=53.1
Q ss_pred CCCCCeEEEecCCCCH---HHHHHHHhCCEEEEEcCCCcHHHHHHHHHHHHHcCCceEEEEeecCCCCc--CcCC-----
Q 026274 68 RFSGANVVELGAGTSL---PGLVAAKVGSNVTLTDDSNRIEVLKNMRRVCEMNKLNCRVMGLTWGFLDA--SIFD----- 137 (241)
Q Consensus 68 ~~~~~~VLElGcGtGl---~sl~la~~g~~V~~tD~~~~~~~l~~~~~n~~~n~~~~~~~~l~w~~~~~--~~~~----- 137 (241)
..+++++|=-|++.|+ ++..+++.|++|+++|.++ +-++.+...+...+..+.+...|..+... ...+
T Consensus 25 ~l~~k~~lVTGas~GIG~aia~~la~~G~~V~~~~r~~--~~~~~~~~~~~~~~~~~~~~~~Dv~d~~~v~~~~~~~~~~ 102 (270)
T 3ftp_A 25 TLDKQVAIVTGASRGIGRAIALELARRGAMVIGTATTE--AGAEGIGAAFKQAGLEGRGAVLNVNDATAVDALVESTLKE 102 (270)
T ss_dssp TTTTCEEEETTCSSHHHHHHHHHHHHTTCEEEEEESSH--HHHHHHHHHHHHHTCCCEEEECCTTCHHHHHHHHHHHHHH
T ss_pred CCCCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEeCCH--HHHHHHHHHHHhcCCcEEEEEEeCCCHHHHHHHHHHHHHH
Confidence 3577889999977663 3444566699999999985 46666666666666667777776654321 0111
Q ss_pred -CCCcEEEEcCCcC
Q 026274 138 -LNPNIILGADVFY 150 (241)
Q Consensus 138 -~~fDlIl~~dvly 150 (241)
.+.|+++.+--+.
T Consensus 103 ~g~iD~lvnnAg~~ 116 (270)
T 3ftp_A 103 FGALNVLVNNAGIT 116 (270)
T ss_dssp HSCCCEEEECCCCC
T ss_pred cCCCCEEEECCCCC
Confidence 3689998765543
|
| >3v2g_A 3-oxoacyl-[acyl-carrier-protein] reductase; structural genomics, PSI-biology, protein structure initiati nysgrc; 2.30A {Sinorhizobium meliloti} | Back alignment and structure |
|---|
Probab=81.72 E-value=6.4 Score=32.30 Aligned_cols=82 Identities=13% Similarity=0.069 Sum_probs=53.7
Q ss_pred CCCCCeEEEecCCCCH---HHHHHHHhCCEEEEEcCCCcHHHHHHHHHHHHHcCCceEEEEeecCCCCc--CcCC-----
Q 026274 68 RFSGANVVELGAGTSL---PGLVAAKVGSNVTLTDDSNRIEVLKNMRRVCEMNKLNCRVMGLTWGFLDA--SIFD----- 137 (241)
Q Consensus 68 ~~~~~~VLElGcGtGl---~sl~la~~g~~V~~tD~~~~~~~l~~~~~n~~~n~~~~~~~~l~w~~~~~--~~~~----- 137 (241)
..+++++|=-|++.|+ ++..+++.|++|++++... .+.++.+...+...+..+.+...|..+... ....
T Consensus 28 ~l~gk~~lVTGas~GIG~aia~~la~~G~~V~~~~~~~-~~~~~~~~~~l~~~~~~~~~~~~Dv~d~~~v~~~~~~~~~~ 106 (271)
T 3v2g_A 28 SLAGKTAFVTGGSRGIGAAIAKRLALEGAAVALTYVNA-AERAQAVVSEIEQAGGRAVAIRADNRDAEAIEQAIRETVEA 106 (271)
T ss_dssp CCTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESSC-HHHHHHHHHHHHHTTCCEEEEECCTTCHHHHHHHHHHHHHH
T ss_pred CCCCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEeCCC-HHHHHHHHHHHHhcCCcEEEEECCCCCHHHHHHHHHHHHHH
Confidence 4678999999988764 3445566699999998776 345565555566566677777776655321 0011
Q ss_pred -CCCcEEEEcCCcC
Q 026274 138 -LNPNIILGADVFY 150 (241)
Q Consensus 138 -~~fDlIl~~dvly 150 (241)
++.|+++.+--+.
T Consensus 107 ~g~iD~lvnnAg~~ 120 (271)
T 3v2g_A 107 LGGLDILVNSAGIW 120 (271)
T ss_dssp HSCCCEEEECCCCC
T ss_pred cCCCcEEEECCCCC
Confidence 2689998765543
|
| >3guy_A Short-chain dehydrogenase/reductase SDR; structural genomics, oxidoreductase, PSI-2, protein structur initiative; 1.90A {Vibrio parahaemolyticus} | Back alignment and structure |
|---|
Probab=81.62 E-value=7.8 Score=30.62 Aligned_cols=74 Identities=16% Similarity=0.085 Sum_probs=41.8
Q ss_pred CeEEEecCCCCH---HHHHHHHhCCEEEEEcCCCcHHHHHHHHHHHHHcCCceEEEEeecCCCCc-----CcCCCCCcEE
Q 026274 72 ANVVELGAGTSL---PGLVAAKVGSNVTLTDDSNRIEVLKNMRRVCEMNKLNCRVMGLTWGFLDA-----SIFDLNPNII 143 (241)
Q Consensus 72 ~~VLElGcGtGl---~sl~la~~g~~V~~tD~~~~~~~l~~~~~n~~~n~~~~~~~~l~w~~~~~-----~~~~~~fDlI 143 (241)
++||=.|++.|+ ++..+++.|++|+++|.++ +.++.+... .+..+.+...|..+... ......+|++
T Consensus 2 k~vlVTGas~gIG~~~a~~l~~~G~~V~~~~r~~--~~~~~~~~~---~~~~~~~~~~D~~~~~~v~~~~~~~~~~~d~l 76 (230)
T 3guy_A 2 SLIVITGASSGLGAELAKLYDAEGKATYLTGRSE--SKLSTVTNC---LSNNVGYRARDLASHQEVEQLFEQLDSIPSTV 76 (230)
T ss_dssp -CEEEESTTSHHHHHHHHHHHHTTCCEEEEESCH--HHHHHHHHT---CSSCCCEEECCTTCHHHHHHHHHSCSSCCSEE
T ss_pred CEEEEecCCchHHHHHHHHHHHCCCEEEEEeCCH--HHHHHHHHH---HhhccCeEeecCCCHHHHHHHHHHHhhcCCEE
Confidence 357777877653 3344555699999999985 344433332 24455566666554321 1112356988
Q ss_pred EEcCCcC
Q 026274 144 LGADVFY 150 (241)
Q Consensus 144 l~~dvly 150 (241)
+.+--+.
T Consensus 77 v~~Ag~~ 83 (230)
T 3guy_A 77 VHSAGSG 83 (230)
T ss_dssp EECCCCC
T ss_pred EEeCCcC
Confidence 8765543
|
| >3r1i_A Short-chain type dehydrogenase/reductase; structural genomics, seattle structural genomics center for infectious disease, ssgcid; 1.95A {Mycobacterium marinum} | Back alignment and structure |
|---|
Probab=81.49 E-value=3.4 Score=34.10 Aligned_cols=82 Identities=16% Similarity=0.137 Sum_probs=54.1
Q ss_pred CCCCCeEEEecCCCCH---HHHHHHHhCCEEEEEcCCCcHHHHHHHHHHHHHcCCceEEEEeecCCCCc--CcCC-----
Q 026274 68 RFSGANVVELGAGTSL---PGLVAAKVGSNVTLTDDSNRIEVLKNMRRVCEMNKLNCRVMGLTWGFLDA--SIFD----- 137 (241)
Q Consensus 68 ~~~~~~VLElGcGtGl---~sl~la~~g~~V~~tD~~~~~~~l~~~~~n~~~n~~~~~~~~l~w~~~~~--~~~~----- 137 (241)
..+++++|=-|++.|+ ++..+++.|++|+++|.++ +.++.+.+.+...+.++.+...|..+... ...+
T Consensus 29 ~l~gk~~lVTGas~GIG~aia~~la~~G~~V~~~~r~~--~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~v~~~~~~~~~~ 106 (276)
T 3r1i_A 29 DLSGKRALITGASTGIGKKVALAYAEAGAQVAVAARHS--DALQVVADEIAGVGGKALPIRCDVTQPDQVRGMLDQMTGE 106 (276)
T ss_dssp CCTTCEEEEESTTSHHHHHHHHHHHHTTCEEEEEESSG--GGGHHHHHHHHHTTCCCEEEECCTTCHHHHHHHHHHHHHH
T ss_pred CCCCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEeCCH--HHHHHHHHHHHhcCCeEEEEEcCCCCHHHHHHHHHHHHHH
Confidence 4678999999988663 3444556699999999986 35566655566566667777777665421 0111
Q ss_pred -CCCcEEEEcCCcCC
Q 026274 138 -LNPNIILGADVFYD 151 (241)
Q Consensus 138 -~~fDlIl~~dvly~ 151 (241)
.+.|+++.+--+..
T Consensus 107 ~g~iD~lvnnAg~~~ 121 (276)
T 3r1i_A 107 LGGIDIAVCNAGIVS 121 (276)
T ss_dssp HSCCSEEEECCCCCC
T ss_pred cCCCCEEEECCCCCC
Confidence 27899987655443
|
| >3ioy_A Short-chain dehydrogenase/reductase SDR; structural genomics, oxidoreductase, PSI-2, protein structure initiative; 1.90A {Novosphingobium aromaticivorans DSM12444} | Back alignment and structure |
|---|
Probab=81.44 E-value=7.9 Score=32.62 Aligned_cols=81 Identities=11% Similarity=0.039 Sum_probs=52.5
Q ss_pred CCCCCeEEEecCCCCH---HHHHHHHhCCEEEEEcCCCcHHHHHHHHHHHHHcCC--ceEEEEeecCCCCc--CcC----
Q 026274 68 RFSGANVVELGAGTSL---PGLVAAKVGSNVTLTDDSNRIEVLKNMRRVCEMNKL--NCRVMGLTWGFLDA--SIF---- 136 (241)
Q Consensus 68 ~~~~~~VLElGcGtGl---~sl~la~~g~~V~~tD~~~~~~~l~~~~~n~~~n~~--~~~~~~l~w~~~~~--~~~---- 136 (241)
...+++||=-|++.|+ +...+++.|++|++++.++ +-++.+...+...+. .+.+...|..+... ...
T Consensus 5 ~l~~k~vlVTGas~gIG~~la~~l~~~G~~Vv~~~r~~--~~~~~~~~~l~~~~~~~~~~~~~~Dl~~~~~v~~~~~~~~ 82 (319)
T 3ioy_A 5 DFAGRTAFVTGGANGVGIGLVRQLLNQGCKVAIADIRQ--DSIDKALATLEAEGSGPEVMGVQLDVASREGFKMAADEVE 82 (319)
T ss_dssp CCTTCEEEEETTTSTHHHHHHHHHHHTTCEEEEEESCH--HHHHHHHHHHHHHTCGGGEEEEECCTTCHHHHHHHHHHHH
T ss_pred CCCCCEEEEcCCchHHHHHHHHHHHHCCCEEEEEECCH--HHHHHHHHHHHhcCCCCeEEEEECCCCCHHHHHHHHHHHH
Confidence 3568899999988774 3344555699999999995 456656555555554 56667777665321 000
Q ss_pred --CCCCcEEEEcCCcC
Q 026274 137 --DLNPNIILGADVFY 150 (241)
Q Consensus 137 --~~~fDlIl~~dvly 150 (241)
-...|+++.+--+.
T Consensus 83 ~~~g~id~lv~nAg~~ 98 (319)
T 3ioy_A 83 ARFGPVSILCNNAGVN 98 (319)
T ss_dssp HHTCCEEEEEECCCCC
T ss_pred HhCCCCCEEEECCCcC
Confidence 13689998776543
|
| >3sju_A Keto reductase; short-chain dehydrogenase, oxidoreductase; HET: NDP; 2.40A {Streptomyces griseoruber} | Back alignment and structure |
|---|
Probab=81.42 E-value=5.2 Score=32.95 Aligned_cols=80 Identities=8% Similarity=-0.110 Sum_probs=50.8
Q ss_pred CCCCeEEEecCCCCH---HHHHHHHhCCEEEEEcCCCcHHHHHHHHHHHHHcCCceEEEEeecCCCCc--CcC------C
Q 026274 69 FSGANVVELGAGTSL---PGLVAAKVGSNVTLTDDSNRIEVLKNMRRVCEMNKLNCRVMGLTWGFLDA--SIF------D 137 (241)
Q Consensus 69 ~~~~~VLElGcGtGl---~sl~la~~g~~V~~tD~~~~~~~l~~~~~n~~~n~~~~~~~~l~w~~~~~--~~~------~ 137 (241)
.+++++|=-|++.|+ ++..+++.|++|++++.++ +-++.+.+.+...+..+.+...|..+... ... -
T Consensus 22 ~~~k~~lVTGas~GIG~aia~~la~~G~~V~~~~r~~--~~~~~~~~~l~~~~~~~~~~~~Dv~d~~~v~~~~~~~~~~~ 99 (279)
T 3sju_A 22 SRPQTAFVTGVSSGIGLAVARTLAARGIAVYGCARDA--KNVSAAVDGLRAAGHDVDGSSCDVTSTDEVHAAVAAAVERF 99 (279)
T ss_dssp ---CEEEEESTTSHHHHHHHHHHHHTTCEEEEEESCH--HHHHHHHHHHHTTTCCEEEEECCTTCHHHHHHHHHHHHHHH
T ss_pred cCCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEeCCH--HHHHHHHHHHHhcCCcEEEEECCCCCHHHHHHHHHHHHHHc
Confidence 467889999987663 3444556699999999985 45665555565556677777777665321 001 0
Q ss_pred CCCcEEEEcCCcC
Q 026274 138 LNPNIILGADVFY 150 (241)
Q Consensus 138 ~~fDlIl~~dvly 150 (241)
++.|+++.+--+.
T Consensus 100 g~id~lv~nAg~~ 112 (279)
T 3sju_A 100 GPIGILVNSAGRN 112 (279)
T ss_dssp CSCCEEEECCCCC
T ss_pred CCCcEEEECCCCC
Confidence 3689998765544
|
| >3t7c_A Carveol dehydrogenase; structural genomics, seattle structural genomics center for infectious disease, ssgcid; HET: NAD; 1.95A {Mycobacterium avium} | Back alignment and structure |
|---|
Probab=81.34 E-value=6.7 Score=32.60 Aligned_cols=82 Identities=17% Similarity=0.160 Sum_probs=53.2
Q ss_pred CCCCCeEEEecCCCCH---HHHHHHHhCCEEEEEcCCC----------cHHHHHHHHHHHHHcCCceEEEEeecCCCCc-
Q 026274 68 RFSGANVVELGAGTSL---PGLVAAKVGSNVTLTDDSN----------RIEVLKNMRRVCEMNKLNCRVMGLTWGFLDA- 133 (241)
Q Consensus 68 ~~~~~~VLElGcGtGl---~sl~la~~g~~V~~tD~~~----------~~~~l~~~~~n~~~n~~~~~~~~l~w~~~~~- 133 (241)
.++++++|=-|++.|+ ++..+++.|++|+++|.++ .++.++.+...+...+.++.+...|..+...
T Consensus 25 ~l~gk~~lVTGas~GIG~aia~~la~~G~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dv~~~~~v 104 (299)
T 3t7c_A 25 KVEGKVAFITGAARGQGRSHAITLAREGADIIAIDVCKQLDGVKLPMSTPDDLAETVRQVEALGRRIIASQVDVRDFDAM 104 (299)
T ss_dssp TTTTCEEEEESTTSHHHHHHHHHHHHTTCEEEEEECCSCCTTCCSCCCCHHHHHHHHHHHHHTTCCEEEEECCTTCHHHH
T ss_pred ccCCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEecccccccccccccCHHHHHHHHHHHHhcCCceEEEECCCCCHHHH
Confidence 4578899999988773 3455666799999999872 1245555555555566677777777665421
Q ss_pred -CcCC------CCCcEEEEcCCc
Q 026274 134 -SIFD------LNPNIILGADVF 149 (241)
Q Consensus 134 -~~~~------~~fDlIl~~dvl 149 (241)
...+ ++.|+++.+--+
T Consensus 105 ~~~~~~~~~~~g~iD~lv~nAg~ 127 (299)
T 3t7c_A 105 QAAVDDGVTQLGRLDIVLANAAL 127 (299)
T ss_dssp HHHHHHHHHHHSCCCEEEECCCC
T ss_pred HHHHHHHHHHhCCCCEEEECCCC
Confidence 0111 378998876544
|
| >3swr_A DNA (cytosine-5)-methyltransferase 1; epigenetics, DNA methyltransferase fold, maintenance methyla transferase; HET: DNA SFG MES; 2.49A {Homo sapiens} PDB: 3pta_A* 3pt6_A* 3pt9_A* 4da4_A* | Back alignment and structure |
|---|
Probab=81.31 E-value=3.2 Score=41.14 Aligned_cols=41 Identities=7% Similarity=-0.040 Sum_probs=33.1
Q ss_pred CCeEEEecCCCCHHHHHHHHhCC--EEEEEcCCCcHHHHHHHHHH
Q 026274 71 GANVVELGAGTSLPGLVAAKVGS--NVTLTDDSNRIEVLKNMRRV 113 (241)
Q Consensus 71 ~~~VLElGcGtGl~sl~la~~g~--~V~~tD~~~~~~~l~~~~~n 113 (241)
..+++||-||.|-+++.+.+.|. -|.++|+++ .+.+..+.|
T Consensus 540 ~l~~iDLFaG~GGlslGl~~AG~~~vv~avEid~--~A~~ty~~N 582 (1002)
T 3swr_A 540 KLRTLDVFSGCGGLSEGFHQAGISDTLWAIEMWD--PAAQAFRLN 582 (1002)
T ss_dssp CEEEEEESCTTSHHHHHHHHHTSEEEEEEECSSH--HHHHHHHHH
T ss_pred CCeEEEeccCccHHHHHHHHCCCCceEEEEECCH--HHHHHHHHh
Confidence 34799999999999999999997 478999995 466555554
|
| >3h8v_A Ubiquitin-like modifier-activating enzyme 5; rossman fold, ATP-binding, UBL conjugation pathway, transfer structural genomics consortium, SGC; HET: ATP; 2.00A {Homo sapiens} PDB: 3guc_A* | Back alignment and structure |
|---|
Probab=81.26 E-value=3.1 Score=35.26 Aligned_cols=37 Identities=16% Similarity=0.236 Sum_probs=29.3
Q ss_pred cCCCCCCeEEEecCC-CC-HHHHHHHHhCC-EEEEEcCCC
Q 026274 66 RYRFSGANVVELGAG-TS-LPGLVAAKVGS-NVTLTDDSN 102 (241)
Q Consensus 66 ~~~~~~~~VLElGcG-tG-l~sl~la~~g~-~V~~tD~~~ 102 (241)
....++.+||=+||| .| .+...|++.|. +++++|.+.
T Consensus 31 q~kL~~~~VlVvGaGGlGs~va~~La~aGVG~i~lvD~D~ 70 (292)
T 3h8v_A 31 YEKIRTFAVAIVGVGGVGSVTAEMLTRCGIGKLLLFDYDK 70 (292)
T ss_dssp -CGGGGCEEEEECCSHHHHHHHHHHHHHTCSEEEEECCCB
T ss_pred HHHHhCCeEEEECcCHHHHHHHHHHHHcCCCEEEEECCCc
Confidence 345677899999999 56 56778888886 899999875
|
| >3pgx_A Carveol dehydrogenase; structural genomics, seattle structural genomics center for infectious disease, ssgcid; HET: NAD; 1.85A {Mycobacterium avium} SCOP: c.2.1.0 | Back alignment and structure |
|---|
Probab=81.11 E-value=6.6 Score=32.20 Aligned_cols=85 Identities=14% Similarity=0.058 Sum_probs=55.2
Q ss_pred CCCCCCeEEEecCCCCH---HHHHHHHhCCEEEEEcCCC-----------cHHHHHHHHHHHHHcCCceEEEEeecCCCC
Q 026274 67 YRFSGANVVELGAGTSL---PGLVAAKVGSNVTLTDDSN-----------RIEVLKNMRRVCEMNKLNCRVMGLTWGFLD 132 (241)
Q Consensus 67 ~~~~~~~VLElGcGtGl---~sl~la~~g~~V~~tD~~~-----------~~~~l~~~~~n~~~n~~~~~~~~l~w~~~~ 132 (241)
...+++++|=-|++.|+ ++..+++.|++|+++|.+. +++-++.+.+.+...+..+.+...|..+..
T Consensus 11 ~~l~gk~~lVTGas~gIG~a~a~~la~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dv~~~~ 90 (280)
T 3pgx_A 11 GSLQGRVAFITGAARGQGRSHAVRLAAEGADIIACDICAPVSASVTYAPASPEDLDETARLVEDQGRKALTRVLDVRDDA 90 (280)
T ss_dssp CTTTTCEEEEESTTSHHHHHHHHHHHHTTCEEEEEECCSCCCTTCCSCCCCHHHHHHHHHHHHTTTCCEEEEECCTTCHH
T ss_pred cccCCCEEEEECCCcHHHHHHHHHHHHCCCEEEEEeccccccccccccccCHHHHHHHHHHHHhcCCeEEEEEcCCCCHH
Confidence 34688999999988773 3445566699999999831 135666666666666667777777766532
Q ss_pred c--CcCC------CCCcEEEEcCCcCC
Q 026274 133 A--SIFD------LNPNIILGADVFYD 151 (241)
Q Consensus 133 ~--~~~~------~~fDlIl~~dvly~ 151 (241)
. ...+ .+.|+++.+--+..
T Consensus 91 ~v~~~~~~~~~~~g~id~lvnnAg~~~ 117 (280)
T 3pgx_A 91 ALRELVADGMEQFGRLDVVVANAGVLS 117 (280)
T ss_dssp HHHHHHHHHHHHHCCCCEEEECCCCCC
T ss_pred HHHHHHHHHHHHcCCCCEEEECCCCCC
Confidence 1 0111 37899987755543
|
| >3m6i_A L-arabinitol 4-dehydrogenase; medium chain dehydrogenase/reductase, oxidoreductase; HET: NAD; 2.60A {Neurospora crassa} | Back alignment and structure |
|---|
Probab=81.08 E-value=2.9 Score=35.85 Aligned_cols=45 Identities=29% Similarity=0.298 Sum_probs=33.1
Q ss_pred cCCCCCCeEEEecCC-CCHHHHHHHH-hCCE-EEEEcCCCcHHHHHHHHH
Q 026274 66 RYRFSGANVVELGAG-TSLPGLVAAK-VGSN-VTLTDDSNRIEVLKNMRR 112 (241)
Q Consensus 66 ~~~~~~~~VLElGcG-tGl~sl~la~-~g~~-V~~tD~~~~~~~l~~~~~ 112 (241)
....+|.+||=+|+| .|++.+.+|+ .|++ |+++|.++ +-++.+++
T Consensus 175 ~~~~~g~~VlV~GaG~vG~~aiqlak~~Ga~~Vi~~~~~~--~~~~~a~~ 222 (363)
T 3m6i_A 175 AGVRLGDPVLICGAGPIGLITMLCAKAAGACPLVITDIDE--GRLKFAKE 222 (363)
T ss_dssp HTCCTTCCEEEECCSHHHHHHHHHHHHTTCCSEEEEESCH--HHHHHHHH
T ss_pred cCCCCCCEEEEECCCHHHHHHHHHHHHcCCCEEEEECCCH--HHHHHHHH
Confidence 345578899999987 3666677776 4886 99999995 46666655
|
| >1nyt_A Shikimate 5-dehydrogenase; alpha/beta domains, WIDE cleft separation, oxidoreductase; HET: NAP; 1.50A {Escherichia coli} SCOP: c.2.1.7 c.58.1.5 | Back alignment and structure |
|---|
Probab=81.05 E-value=8.9 Score=31.56 Aligned_cols=85 Identities=16% Similarity=0.192 Sum_probs=46.7
Q ss_pred HHHHHHHHHhccCCCCCCeEEEecCCCCH---HHHHHHHhCCEEEEEcCCCcHHHHHHHHHHHHHcCCceEEEEeecCCC
Q 026274 55 SVILAEYVWQQRYRFSGANVVELGAGTSL---PGLVAAKVGSNVTLTDDSNRIEVLKNMRRVCEMNKLNCRVMGLTWGFL 131 (241)
Q Consensus 55 s~~L~~~l~~~~~~~~~~~VLElGcGtGl---~sl~la~~g~~V~~tD~~~~~~~l~~~~~n~~~n~~~~~~~~l~w~~~ 131 (241)
..-+..-|.......++++++=+|+| |+ +...+++.|++|++++.++ +-++.+.+.+...+ .+. ..++.+.
T Consensus 103 ~~G~~~~L~~~~~~l~~k~vlViGaG-g~g~a~a~~L~~~G~~V~v~~R~~--~~~~~la~~~~~~~-~~~--~~~~~~~ 176 (271)
T 1nyt_A 103 GVGLLSDLERLSFIRPGLRILLIGAG-GASRGVLLPLLSLDCAVTITNRTV--SRAEELAKLFAHTG-SIQ--ALSMDEL 176 (271)
T ss_dssp HHHHHHHHHHHTCCCTTCEEEEECCS-HHHHHHHHHHHHTTCEEEEECSSH--HHHHHHHHHTGGGS-SEE--ECCSGGG
T ss_pred HHHHHHHHHhcCcCcCCCEEEEECCc-HHHHHHHHHHHHcCCEEEEEECCH--HHHHHHHHHhhccC-Cee--EecHHHh
Confidence 34444444443334678999999997 42 2334455688999999984 34443333332211 221 2233221
Q ss_pred CcCcCCCCCcEEEEcCCc
Q 026274 132 DASIFDLNPNIILGADVF 149 (241)
Q Consensus 132 ~~~~~~~~fDlIl~~dvl 149 (241)
. . ..+|+|+.+-..
T Consensus 177 ~-~---~~~DivVn~t~~ 190 (271)
T 1nyt_A 177 E-G---HEFDLIINATSS 190 (271)
T ss_dssp T-T---CCCSEEEECCSC
T ss_pred c-c---CCCCEEEECCCC
Confidence 1 1 478999877554
|
| >3lk7_A UDP-N-acetylmuramoylalanine--D-glutamate ligase; agalacitae, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: MSE; 1.50A {Streptococcus agalactiae} | Back alignment and structure |
|---|
Probab=80.94 E-value=4.6 Score=36.01 Aligned_cols=74 Identities=16% Similarity=0.143 Sum_probs=43.6
Q ss_pred CCCCCeEEEecCC-CCH-HHHHHHHhCCEEEEEcCCCc--HHHHHHHHHHHHHcCCceEEEEeecCCCCcCcCCCCCcEE
Q 026274 68 RFSGANVVELGAG-TSL-PGLVAAKVGSNVTLTDDSNR--IEVLKNMRRVCEMNKLNCRVMGLTWGFLDASIFDLNPNII 143 (241)
Q Consensus 68 ~~~~~~VLElGcG-tGl-~sl~la~~g~~V~~tD~~~~--~~~l~~~~~n~~~n~~~~~~~~l~w~~~~~~~~~~~fDlI 143 (241)
.+++++|+=+|.| +|+ .+..|+++|++|+++|..+. +...+ ..+..++.+. .+.......+..+|+|
T Consensus 6 ~~~~k~v~viG~G~sG~s~A~~l~~~G~~V~~~D~~~~~~~~~~~----~L~~~gi~~~-----~g~~~~~~~~~~~d~v 76 (451)
T 3lk7_A 6 TFENKKVLVLGLARSGEAAARLLAKLGAIVTVNDGKPFDENPTAQ----SLLEEGIKVV-----CGSHPLELLDEDFCYM 76 (451)
T ss_dssp TTTTCEEEEECCTTTHHHHHHHHHHTTCEEEEEESSCGGGCHHHH----HHHHTTCEEE-----ESCCCGGGGGSCEEEE
T ss_pred hcCCCEEEEEeeCHHHHHHHHHHHhCCCEEEEEeCCcccCChHHH----HHHhCCCEEE-----ECCChHHhhcCCCCEE
Confidence 3578899999998 453 24446667999999999641 11222 2333455432 1221122222239999
Q ss_pred EEcCCcC
Q 026274 144 LGADVFY 150 (241)
Q Consensus 144 l~~dvly 150 (241)
+.+.-+-
T Consensus 77 v~spgi~ 83 (451)
T 3lk7_A 77 IKNPGIP 83 (451)
T ss_dssp EECTTSC
T ss_pred EECCcCC
Confidence 9887763
|
| >2q2v_A Beta-D-hydroxybutyrate dehydrogenase; SDR, oxidoreductase; HET: NAD; 1.90A {Pseudomonas putida} PDB: 2q2q_A* 2q2w_A | Back alignment and structure |
|---|
Probab=80.74 E-value=6.4 Score=31.72 Aligned_cols=78 Identities=12% Similarity=0.141 Sum_probs=44.2
Q ss_pred CCCCeEEEecCCCCH---HHHHHHHhCCEEEEEcCCCcHHHHHHHHHHHHHcCCceEEEEeecCCCCc--CcCC------
Q 026274 69 FSGANVVELGAGTSL---PGLVAAKVGSNVTLTDDSNRIEVLKNMRRVCEMNKLNCRVMGLTWGFLDA--SIFD------ 137 (241)
Q Consensus 69 ~~~~~VLElGcGtGl---~sl~la~~g~~V~~tD~~~~~~~l~~~~~n~~~n~~~~~~~~l~w~~~~~--~~~~------ 137 (241)
.+++++|=.|++.|+ +...+++.|++|++++.++. +.+...+...+.++.+...|..+... ...+
T Consensus 2 l~~k~vlVTGas~giG~~ia~~l~~~G~~V~~~~r~~~----~~~~~~l~~~~~~~~~~~~D~~~~~~v~~~~~~~~~~~ 77 (255)
T 2q2v_A 2 LKGKTALVTGSTSGIGLGIAQVLARAGANIVLNGFGDP----APALAEIARHGVKAVHHPADLSDVAQIEALFALAEREF 77 (255)
T ss_dssp CTTCEEEESSCSSHHHHHHHHHHHHTTCEEEEECSSCC----HHHHHHHHTTSCCEEEECCCTTSHHHHHHHHHHHHHHH
T ss_pred CCCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEeCCch----HHHHHHHHhcCCceEEEeCCCCCHHHHHHHHHHHHHHc
Confidence 357788988876553 23334455999999999863 22222233334455555556554321 1111
Q ss_pred CCCcEEEEcCCcC
Q 026274 138 LNPNIILGADVFY 150 (241)
Q Consensus 138 ~~fDlIl~~dvly 150 (241)
..+|+++.+--+.
T Consensus 78 g~id~lv~~Ag~~ 90 (255)
T 2q2v_A 78 GGVDILVNNAGIQ 90 (255)
T ss_dssp SSCSEEEECCCCC
T ss_pred CCCCEEEECCCCC
Confidence 2689988765443
|
| >3jyn_A Quinone oxidoreductase; rossmann fold, protein-NADPH complex; HET: NDP; 2.01A {Pseudomonas syringae PV} PDB: 3jyl_A* | Back alignment and structure |
|---|
Probab=80.68 E-value=1.6 Score=36.90 Aligned_cols=43 Identities=21% Similarity=0.105 Sum_probs=31.0
Q ss_pred CCCCCCeEEEecC-C-CCHHHHHHHH-hCCEEEEEcCCCcHHHHHHHH
Q 026274 67 YRFSGANVVELGA-G-TSLPGLVAAK-VGSNVTLTDDSNRIEVLKNMR 111 (241)
Q Consensus 67 ~~~~~~~VLElGc-G-tGl~sl~la~-~g~~V~~tD~~~~~~~l~~~~ 111 (241)
...+|.+||=.|+ | .|+..+.+++ .|++|+++|.++ +-++.++
T Consensus 137 ~~~~g~~VlV~Ga~g~iG~~~~~~a~~~Ga~Vi~~~~~~--~~~~~~~ 182 (325)
T 3jyn_A 137 QVKPGEIILFHAAAGGVGSLACQWAKALGAKLIGTVSSP--EKAAHAK 182 (325)
T ss_dssp CCCTTCEEEESSTTSHHHHHHHHHHHHHTCEEEEEESSH--HHHHHHH
T ss_pred CCCCCCEEEEEcCCcHHHHHHHHHHHHCCCEEEEEeCCH--HHHHHHH
Confidence 4557889999993 3 5666666665 599999999985 4555554
|
| >3kvo_A Hydroxysteroid dehydrogenase-like protein 2; HSDL2, human hydroxysteroid dehydrogenase like 2, SDHL2, STR genomics, structural genomics consortium; HET: NAP; 2.25A {Homo sapiens} | Back alignment and structure |
|---|
Probab=80.57 E-value=12 Score=32.12 Aligned_cols=84 Identities=15% Similarity=0.102 Sum_probs=52.9
Q ss_pred CCCCCCeEEEecCCCCH---HHHHHHHhCCEEEEEcCCCcH-----HHHHHHHHHHHHcCCceEEEEeecCCCCc--CcC
Q 026274 67 YRFSGANVVELGAGTSL---PGLVAAKVGSNVTLTDDSNRI-----EVLKNMRRVCEMNKLNCRVMGLTWGFLDA--SIF 136 (241)
Q Consensus 67 ~~~~~~~VLElGcGtGl---~sl~la~~g~~V~~tD~~~~~-----~~l~~~~~n~~~n~~~~~~~~l~w~~~~~--~~~ 136 (241)
..++++++|=-|++.|+ ++..+++.|++|++++.++.. +.++.+.+.+...+..+.+...|..+... ...
T Consensus 41 ~~l~gk~vlVTGas~GIG~aia~~La~~Ga~Vvl~~r~~~~~~~l~~~l~~~~~~~~~~g~~~~~~~~Dv~d~~~v~~~~ 120 (346)
T 3kvo_A 41 GRLAGCTVFITGASRGIGKAIALKAAKDGANIVIAAKTAQPHPKLLGTIYTAAEEIEAVGGKALPCIVDVRDEQQISAAV 120 (346)
T ss_dssp STTTTCEEEEETTTSHHHHHHHHHHHTTTCEEEEEESCCSCCSSSCCCHHHHHHHHHHTTCEEEEEECCTTCHHHHHHHH
T ss_pred CCCCCCEEEEeCCChHHHHHHHHHHHHCCCEEEEEECChhhhhhhHHHHHHHHHHHHhcCCeEEEEEccCCCHHHHHHHH
Confidence 45688999999988763 344455669999999988621 01344445555566677777777665421 001
Q ss_pred C------CCCcEEEEcCCcC
Q 026274 137 D------LNPNIILGADVFY 150 (241)
Q Consensus 137 ~------~~fDlIl~~dvly 150 (241)
+ ...|+++.+--+.
T Consensus 121 ~~~~~~~g~iDilVnnAG~~ 140 (346)
T 3kvo_A 121 EKAIKKFGGIDILVNNASAI 140 (346)
T ss_dssp HHHHHHHSCCCEEEECCCCC
T ss_pred HHHHHHcCCCCEEEECCCCC
Confidence 1 3789988765543
|
| >3r3s_A Oxidoreductase; structural genomics, csgid, center for structural genomics O infectious diseases, 3-layer(ABA) sandwich, rossmann fold; HET: NAD; 1.25A {Salmonella enterica subsp} | Back alignment and structure |
|---|
Probab=80.49 E-value=4.2 Score=33.86 Aligned_cols=82 Identities=11% Similarity=0.056 Sum_probs=51.9
Q ss_pred CCCCCeEEEecCCCCH---HHHHHHHhCCEEEEEcCCCcHHHHHHHHHHHHHcCCceEEEEeecCCCCc--CcC------
Q 026274 68 RFSGANVVELGAGTSL---PGLVAAKVGSNVTLTDDSNRIEVLKNMRRVCEMNKLNCRVMGLTWGFLDA--SIF------ 136 (241)
Q Consensus 68 ~~~~~~VLElGcGtGl---~sl~la~~g~~V~~tD~~~~~~~l~~~~~n~~~n~~~~~~~~l~w~~~~~--~~~------ 136 (241)
..+++++|=-|++.|+ ++..+++.|++|+++|.+...+.++.+...++..+..+.+...|..+... ...
T Consensus 46 ~l~~k~vlVTGas~GIG~aia~~la~~G~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dv~d~~~v~~~~~~~~~~ 125 (294)
T 3r3s_A 46 RLKDRKALVTGGDSGIGRAAAIAYAREGADVAINYLPAEEEDAQQVKALIEECGRKAVLLPGDLSDESFARSLVHKAREA 125 (294)
T ss_dssp TTTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEECCGGGHHHHHHHHHHHHHTTCCEEECCCCTTSHHHHHHHHHHHHHH
T ss_pred CCCCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEeCCcchhHHHHHHHHHHHcCCcEEEEEecCCCHHHHHHHHHHHHHH
Confidence 4578999999987663 34445566999999998742345555555555566666666666554321 001
Q ss_pred CCCCcEEEEcCCc
Q 026274 137 DLNPNIILGADVF 149 (241)
Q Consensus 137 ~~~fDlIl~~dvl 149 (241)
-.+.|+++.+--+
T Consensus 126 ~g~iD~lv~nAg~ 138 (294)
T 3r3s_A 126 LGGLDILALVAGK 138 (294)
T ss_dssp HTCCCEEEECCCC
T ss_pred cCCCCEEEECCCC
Confidence 1368998876554
|
| >3sx2_A Putative 3-ketoacyl-(acyl-carrier-protein) reduct; ssgcid, 3-ketoacyl-(acyl-carrier-protein) reductase, mycobac paratuberculosis; HET: NAD; 1.50A {Mycobacterium avium subsp} | Back alignment and structure |
|---|
Probab=80.30 E-value=7.8 Score=31.61 Aligned_cols=84 Identities=12% Similarity=0.031 Sum_probs=53.8
Q ss_pred CCCCCCeEEEecCCCCH---HHHHHHHhCCEEEEEcCCC----------cHHHHHHHHHHHHHcCCceEEEEeecCCCCc
Q 026274 67 YRFSGANVVELGAGTSL---PGLVAAKVGSNVTLTDDSN----------RIEVLKNMRRVCEMNKLNCRVMGLTWGFLDA 133 (241)
Q Consensus 67 ~~~~~~~VLElGcGtGl---~sl~la~~g~~V~~tD~~~----------~~~~l~~~~~n~~~n~~~~~~~~l~w~~~~~ 133 (241)
...+++++|=-|++.|+ ++..+++.|++|+++|.++ .++.++.+...+...+.++.+...|..+...
T Consensus 9 ~~l~gk~vlVTGas~gIG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~ 88 (278)
T 3sx2_A 9 GPLTGKVAFITGAARGQGRAHAVRLAADGADIIAVDLCDQIASVPYPLATPEELAATVKLVEDIGSRIVARQADVRDRES 88 (278)
T ss_dssp CTTTTCEEEEESTTSHHHHHHHHHHHHTTCEEEEEECCSCCTTCSSCCCCHHHHHHHHHHHHHHTCCEEEEECCTTCHHH
T ss_pred CCCCCCEEEEECCCChHHHHHHHHHHHCCCeEEEEecccccccccccccchHHHHHHHHHHHhcCCeEEEEeCCCCCHHH
Confidence 34678999999987663 3445566699999999872 1345555555555556677777777665421
Q ss_pred --CcCC------CCCcEEEEcCCcC
Q 026274 134 --SIFD------LNPNIILGADVFY 150 (241)
Q Consensus 134 --~~~~------~~fDlIl~~dvly 150 (241)
...+ ++.|+++.+--+.
T Consensus 89 v~~~~~~~~~~~g~id~lv~nAg~~ 113 (278)
T 3sx2_A 89 LSAALQAGLDELGRLDIVVANAGIA 113 (278)
T ss_dssp HHHHHHHHHHHHCCCCEEEECCCCC
T ss_pred HHHHHHHHHHHcCCCCEEEECCCCC
Confidence 0111 3789998765554
|
| >1zem_A Xylitol dehydrogenase; rossmann fold, dinucleotide-binding domain, oxidoreductase; HET: NAD; 1.90A {Gluconobacter oxydans} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=80.26 E-value=7.1 Score=31.65 Aligned_cols=79 Identities=19% Similarity=0.257 Sum_probs=49.9
Q ss_pred CCCCeEEEecCCCCH---HHHHHHHhCCEEEEEcCCCcHHHHHHHHHHHHHcCCceEEEEeecCCCCc--CcCC------
Q 026274 69 FSGANVVELGAGTSL---PGLVAAKVGSNVTLTDDSNRIEVLKNMRRVCEMNKLNCRVMGLTWGFLDA--SIFD------ 137 (241)
Q Consensus 69 ~~~~~VLElGcGtGl---~sl~la~~g~~V~~tD~~~~~~~l~~~~~n~~~n~~~~~~~~l~w~~~~~--~~~~------ 137 (241)
.+++++|=.|++.|+ +...+++.|++|++++.++ +.++.+...+...+.++.+...|..+... ...+
T Consensus 5 l~~k~vlVTGas~gIG~~ia~~l~~~G~~V~~~~r~~--~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~ 82 (262)
T 1zem_A 5 FNGKVCLVTGAGGNIGLATALRLAEEGTAIALLDMNR--EALEKAEASVREKGVEARSYVCDVTSEEAVIGTVDSVVRDF 82 (262)
T ss_dssp TTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCH--HHHHHHHHHHHTTTSCEEEEECCTTCHHHHHHHHHHHHHHH
T ss_pred cCCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEeCCH--HHHHHHHHHHHhcCCcEEEEEecCCCHHHHHHHHHHHHHHh
Confidence 567889999987663 2334555699999999984 45555555555445566666777655321 0000
Q ss_pred CCCcEEEEcCCc
Q 026274 138 LNPNIILGADVF 149 (241)
Q Consensus 138 ~~fDlIl~~dvl 149 (241)
+++|+++.+--+
T Consensus 83 g~id~lv~nAg~ 94 (262)
T 1zem_A 83 GKIDFLFNNAGY 94 (262)
T ss_dssp SCCCEEEECCCC
T ss_pred CCCCEEEECCCC
Confidence 268999876544
|
| >1jw9_B Molybdopterin biosynthesis MOEB protein; MOEB: modified rossmann fold, (2) Cys-X-X-Cys zinc-binding M MOAD: ubiquitin-like fold; 1.70A {Escherichia coli} SCOP: c.111.1.1 PDB: 1jwa_B* 1jwb_B* | Back alignment and structure |
|---|
Probab=80.24 E-value=1.4 Score=36.25 Aligned_cols=34 Identities=26% Similarity=0.343 Sum_probs=26.4
Q ss_pred CCCCeEEEecCC-CC-HHHHHHHHhCC-EEEEEcCCC
Q 026274 69 FSGANVVELGAG-TS-LPGLVAAKVGS-NVTLTDDSN 102 (241)
Q Consensus 69 ~~~~~VLElGcG-tG-l~sl~la~~g~-~V~~tD~~~ 102 (241)
.++++||=+||| .| .+...|++.|. +++++|.+.
T Consensus 29 l~~~~VlVvG~Gg~G~~va~~La~~Gv~~i~lvD~d~ 65 (249)
T 1jw9_B 29 LKDSRVLIVGLGGLGCAASQYLASAGVGNLTLLDFDT 65 (249)
T ss_dssp HHHCEEEEECCSHHHHHHHHHHHHHTCSEEEEECCCB
T ss_pred HhCCeEEEEeeCHHHHHHHHHHHHcCCCeEEEEcCCC
Confidence 356799999998 44 55666777787 899999885
|
| >4fs3_A Enoyl-[acyl-carrier-protein] reductase [NADPH] FA; rossmann fold, short chain dehydrogenase, NADPH binding, oxidoreductase; HET: 0WD 0WE; 1.80A {Staphylococcus aureus subsp} PDB: 3gr6_A* 3gns_A* 4all_A* 3gnt_A 4alk_A* 4alj_A* 4ali_A* 4alm_A 4aln_A | Back alignment and structure |
|---|
Probab=80.20 E-value=3.7 Score=33.50 Aligned_cols=79 Identities=14% Similarity=0.126 Sum_probs=51.8
Q ss_pred CCCCCeEEEecCCC--C---HHHHHHHHhCCEEEEEcCCCcHHHHHHHHHHHHH-cCCceEEEEeecCCCCc--CcC---
Q 026274 68 RFSGANVVELGAGT--S---LPGLVAAKVGSNVTLTDDSNRIEVLKNMRRVCEM-NKLNCRVMGLTWGFLDA--SIF--- 136 (241)
Q Consensus 68 ~~~~~~VLElGcGt--G---l~sl~la~~g~~V~~tD~~~~~~~l~~~~~n~~~-n~~~~~~~~l~w~~~~~--~~~--- 136 (241)
.++||.+|=-|++. | .++..+++.|++|+++|.++ +.++.+.+-++. ++.++.+...|..+..+ ...
T Consensus 3 ~l~gK~alVTGaa~~~GIG~aiA~~la~~Ga~Vvi~~r~~--~~~~~~~~~~~~~~~~~~~~~~~Dv~~~~~v~~~~~~~ 80 (256)
T 4fs3_A 3 NLENKTYVIMGIANKRSIAFGVAKVLDQLGAKLVFTYRKE--RSRKELEKLLEQLNQPEAHLYQIDVQSDEEVINGFEQI 80 (256)
T ss_dssp CCTTCEEEEECCCSTTCHHHHHHHHHHHTTCEEEEEESSG--GGHHHHHHHHGGGTCSSCEEEECCTTCHHHHHHHHHHH
T ss_pred CCCCCEEEEECCCCCchHHHHHHHHHHHCCCEEEEEECCH--HHHHHHHHHHHhcCCCcEEEEEccCCCHHHHHHHHHHH
Confidence 46899999999643 5 34666778899999999996 355655555544 34567777777665421 000
Q ss_pred ---CCCCcEEEEcCC
Q 026274 137 ---DLNPNIILGADV 148 (241)
Q Consensus 137 ---~~~fDlIl~~dv 148 (241)
-++.|+++.+--
T Consensus 81 ~~~~G~iD~lvnnAg 95 (256)
T 4fs3_A 81 GKDVGNIDGVYHSIA 95 (256)
T ss_dssp HHHHCCCSEEEECCC
T ss_pred HHHhCCCCEEEeccc
Confidence 137898886643
|
| >3ged_A Short-chain dehydrogenase/reductase SDR; SCOR, rossmann fold, oxidoreductase; 1.70A {Clostridium thermocellum atcc 27405} PDB: 3geg_A* | Back alignment and structure |
|---|
Probab=80.17 E-value=11 Score=30.78 Aligned_cols=74 Identities=11% Similarity=0.033 Sum_probs=46.1
Q ss_pred CeEEEecCCCCH---HHHHHHHhCCEEEEEcCCCcHHHHHHHHHHHHHcCCceEEEEeecCCCCc--CcC------CCCC
Q 026274 72 ANVVELGAGTSL---PGLVAAKVGSNVTLTDDSNRIEVLKNMRRVCEMNKLNCRVMGLTWGFLDA--SIF------DLNP 140 (241)
Q Consensus 72 ~~VLElGcGtGl---~sl~la~~g~~V~~tD~~~~~~~l~~~~~n~~~n~~~~~~~~l~w~~~~~--~~~------~~~f 140 (241)
|+||=-|++.|+ ++..+++.|++|+++|.++ +.++.+ ...+.++.....|..+... ... -++.
T Consensus 3 K~vlVTGas~GIG~aia~~la~~Ga~V~~~~~~~--~~~~~~----~~~~~~~~~~~~Dv~~~~~v~~~v~~~~~~~g~i 76 (247)
T 3ged_A 3 RGVIVTGGGHGIGKQICLDFLEAGDKVCFIDIDE--KRSADF----AKERPNLFYFHGDVADPLTLKKFVEYAMEKLQRI 76 (247)
T ss_dssp CEEEEESTTSHHHHHHHHHHHHTTCEEEEEESCH--HHHHHH----HTTCTTEEEEECCTTSHHHHHHHHHHHHHHHSCC
T ss_pred CEEEEecCCCHHHHHHHHHHHHCCCEEEEEeCCH--HHHHHH----HHhcCCEEEEEecCCCHHHHHHHHHHHHHHcCCC
Confidence 678888988883 4566777799999999995 333322 2234455566666654321 000 1378
Q ss_pred cEEEEcCCcCC
Q 026274 141 NIILGADVFYD 151 (241)
Q Consensus 141 DlIl~~dvly~ 151 (241)
|+++.+--+..
T Consensus 77 DiLVNNAG~~~ 87 (247)
T 3ged_A 77 DVLVNNACRGS 87 (247)
T ss_dssp CEEEECCCCCC
T ss_pred CEEEECCCCCC
Confidence 99987655443
|
| >1jvb_A NAD(H)-dependent alcohol dehydrogenase; archaeon, zinc, oxidoreductase; HET: MSE; 1.85A {Sulfolobus solfataricus} SCOP: b.35.1.2 c.2.1.1 PDB: 1r37_A* 1nto_A 1nvg_A 3i4c_A 2eer_A* | Back alignment and structure |
|---|
Probab=80.11 E-value=4.7 Score=34.36 Aligned_cols=87 Identities=15% Similarity=0.184 Sum_probs=49.3
Q ss_pred cCCCCCCeEEEecCC--CCHHHHHHHH-h-CCEEEEEcCCCcHHHHHHHHHHHHHcCCceEEEEeecCCCCc-----CcC
Q 026274 66 RYRFSGANVVELGAG--TSLPGLVAAK-V-GSNVTLTDDSNRIEVLKNMRRVCEMNKLNCRVMGLTWGFLDA-----SIF 136 (241)
Q Consensus 66 ~~~~~~~~VLElGcG--tGl~sl~la~-~-g~~V~~tD~~~~~~~l~~~~~n~~~n~~~~~~~~l~w~~~~~-----~~~ 136 (241)
....++++||-.|+| .|+..+.+++ . |++|+++|.++ +-++.+++ .+... .++..+... ...
T Consensus 166 ~~~~~g~~vlV~Gagg~iG~~~~~~a~~~~Ga~Vi~~~~~~--~~~~~~~~----~g~~~---~~~~~~~~~~~~~~~~~ 236 (347)
T 1jvb_A 166 ASLDPTKTLLVVGAGGGLGTMAVQIAKAVSGATIIGVDVRE--EAVEAAKR----AGADY---VINASMQDPLAEIRRIT 236 (347)
T ss_dssp TTCCTTCEEEEETTTSHHHHHHHHHHHHHTCCEEEEEESSH--HHHHHHHH----HTCSE---EEETTTSCHHHHHHHHT
T ss_pred cCCCCCCEEEEECCCccHHHHHHHHHHHcCCCeEEEEcCCH--HHHHHHHH----hCCCE---EecCCCccHHHHHHHHh
Confidence 345578899999998 4444444444 5 89999999985 45555543 23321 123322110 111
Q ss_pred C-CCCcEEEEcCCcCCCccHHHHHHHHHHHhh
Q 026274 137 D-LNPNIILGADVFYDASAFDDLFATITYLLQ 167 (241)
Q Consensus 137 ~-~~fDlIl~~dvly~~~~~~~ll~~~~~lL~ 167 (241)
. ..+|+++-+- .....++...++|+
T Consensus 237 ~~~~~d~vi~~~------g~~~~~~~~~~~l~ 262 (347)
T 1jvb_A 237 ESKGVDAVIDLN------NSEKTLSVYPKALA 262 (347)
T ss_dssp TTSCEEEEEESC------CCHHHHTTGGGGEE
T ss_pred cCCCceEEEECC------CCHHHHHHHHHHHh
Confidence 1 3688888432 12345566666776
|
| >1p77_A Shikimate 5-dehydrogenase; NADPH, oxidoreductase; HET: ATR; 1.95A {Haemophilus influenzae} SCOP: c.2.1.7 c.58.1.5 PDB: 1p74_A* | Back alignment and structure |
|---|
Probab=80.11 E-value=14 Score=30.46 Aligned_cols=87 Identities=14% Similarity=0.105 Sum_probs=49.2
Q ss_pred HHHHHHHHHhccCCCCCCeEEEecCCC-C-HHHHHHHHhCCEEEEEcCCCcHHHHHHHHHHHHHcCCceEEEEeecCCCC
Q 026274 55 SVILAEYVWQQRYRFSGANVVELGAGT-S-LPGLVAAKVGSNVTLTDDSNRIEVLKNMRRVCEMNKLNCRVMGLTWGFLD 132 (241)
Q Consensus 55 s~~L~~~l~~~~~~~~~~~VLElGcGt-G-l~sl~la~~g~~V~~tD~~~~~~~l~~~~~n~~~n~~~~~~~~l~w~~~~ 132 (241)
..-+..-|.......++++++=+|+|. | .+...+++.|++|++++.+. +-.+.+.+.+...+ .+. ..++.+..
T Consensus 103 ~~G~~~~L~~~~~~~~~~~vlvlGaGg~g~a~a~~L~~~G~~v~v~~R~~--~~a~~l~~~~~~~~-~~~--~~~~~~~~ 177 (272)
T 1p77_A 103 GIGLVTDLQRLNWLRPNQHVLILGAGGATKGVLLPLLQAQQNIVLANRTF--SKTKELAERFQPYG-NIQ--AVSMDSIP 177 (272)
T ss_dssp HHHHHHHHHHTTCCCTTCEEEEECCSHHHHTTHHHHHHTTCEEEEEESSH--HHHHHHHHHHGGGS-CEE--EEEGGGCC
T ss_pred HHHHHHHHHHhCCCcCCCEEEEECCcHHHHHHHHHHHHCCCEEEEEECCH--HHHHHHHHHccccC-CeE--EeeHHHhc
Confidence 344444454443446789999999971 2 23445566789999999984 34444443333222 222 23443211
Q ss_pred cCcCCCCCcEEEEcCCcC
Q 026274 133 ASIFDLNPNIILGADVFY 150 (241)
Q Consensus 133 ~~~~~~~fDlIl~~dvly 150 (241)
...+|+|+.+-..-
T Consensus 178 ----~~~~DivIn~t~~~ 191 (272)
T 1p77_A 178 ----LQTYDLVINATSAG 191 (272)
T ss_dssp ----CSCCSEEEECCCC-
T ss_pred ----cCCCCEEEECCCCC
Confidence 13699999775553
|
| >3v8b_A Putative dehydrogenase, possibly 3-oxoacyl-[acyl- protein] reductase; PSI-biology, structural genomics, protein structure initiati nysgrc; 2.70A {Sinorhizobium meliloti} | Back alignment and structure |
|---|
Probab=80.06 E-value=5.9 Score=32.76 Aligned_cols=79 Identities=10% Similarity=0.011 Sum_probs=51.2
Q ss_pred CCCCeEEEecCCCCH---HHHHHHHhCCEEEEEcCCCcHHHHHHHHHHHHHcCCceEEEEeecCCCCc--CcCC------
Q 026274 69 FSGANVVELGAGTSL---PGLVAAKVGSNVTLTDDSNRIEVLKNMRRVCEMNKLNCRVMGLTWGFLDA--SIFD------ 137 (241)
Q Consensus 69 ~~~~~VLElGcGtGl---~sl~la~~g~~V~~tD~~~~~~~l~~~~~n~~~n~~~~~~~~l~w~~~~~--~~~~------ 137 (241)
.+++.+|=-|++.|+ ++..+++.|++|+++|.+. +.++.+...+...+..+.+...|..+... ...+
T Consensus 26 ~~~k~~lVTGas~GIG~aia~~la~~G~~V~~~~r~~--~~~~~~~~~l~~~~~~~~~~~~Dv~d~~~v~~~~~~~~~~~ 103 (283)
T 3v8b_A 26 QPSPVALITGAGSGIGRATALALAADGVTVGALGRTR--TEVEEVADEIVGAGGQAIALEADVSDELQMRNAVRDLVLKF 103 (283)
T ss_dssp -CCCEEEEESCSSHHHHHHHHHHHHTTCEEEEEESSH--HHHHHHHHHHTTTTCCEEEEECCTTCHHHHHHHHHHHHHHH
T ss_pred CCCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEeCCH--HHHHHHHHHHHhcCCcEEEEEccCCCHHHHHHHHHHHHHHh
Confidence 467889999987763 3444556699999999985 45665555555556667777777665321 0011
Q ss_pred CCCcEEEEcCCc
Q 026274 138 LNPNIILGADVF 149 (241)
Q Consensus 138 ~~fDlIl~~dvl 149 (241)
++.|+++.+--+
T Consensus 104 g~iD~lVnnAg~ 115 (283)
T 3v8b_A 104 GHLDIVVANAGI 115 (283)
T ss_dssp SCCCEEEECCCC
T ss_pred CCCCEEEECCCC
Confidence 378998876554
|
| >4fc7_A Peroxisomal 2,4-dienoyl-COA reductase; SDR/rossmann fold, peroxisomal beta-oxidation, oxidoreductas; HET: NAP COA; 1.84A {Homo sapiens} PDB: 4fc6_A* | Back alignment and structure |
|---|
Probab=80.05 E-value=5.6 Score=32.65 Aligned_cols=80 Identities=11% Similarity=0.142 Sum_probs=49.6
Q ss_pred CCCCCeEEEecCCCCH---HHHHHHHhCCEEEEEcCCCcHHHHHHH-HHHHHHcCCceEEEEeecCCCCc--CcCC----
Q 026274 68 RFSGANVVELGAGTSL---PGLVAAKVGSNVTLTDDSNRIEVLKNM-RRVCEMNKLNCRVMGLTWGFLDA--SIFD---- 137 (241)
Q Consensus 68 ~~~~~~VLElGcGtGl---~sl~la~~g~~V~~tD~~~~~~~l~~~-~~n~~~n~~~~~~~~l~w~~~~~--~~~~---- 137 (241)
.++++++|=-|++.|+ +...+++.|++|+++|.+. +-++.+ .+-....+.++.+...|..+... ...+
T Consensus 24 ~l~~k~~lVTGas~GIG~aia~~l~~~G~~V~~~~r~~--~~~~~~~~~~~~~~~~~~~~~~~Dv~~~~~v~~~~~~~~~ 101 (277)
T 4fc7_A 24 LLRDKVAFITGGGSGIGFRIAEIFMRHGCHTVIASRSL--PRVLTAARKLAGATGRRCLPLSMDVRAPPAVMAAVDQALK 101 (277)
T ss_dssp TTTTCEEEEETTTSHHHHHHHHHHHTTTCEEEEEESCH--HHHHHHHHHHHHHHSSCEEEEECCTTCHHHHHHHHHHHHH
T ss_pred ccCCCEEEEeCCCchHHHHHHHHHHHCCCEEEEEeCCH--HHHHHHHHHHHHhcCCcEEEEEcCCCCHHHHHHHHHHHHH
Confidence 4678999999987663 3344555699999999985 333333 33223346667777777665421 0011
Q ss_pred --CCCcEEEEcCCc
Q 026274 138 --LNPNIILGADVF 149 (241)
Q Consensus 138 --~~fDlIl~~dvl 149 (241)
.+.|+++.+--+
T Consensus 102 ~~g~id~lv~nAg~ 115 (277)
T 4fc7_A 102 EFGRIDILINCAAG 115 (277)
T ss_dssp HHSCCCEEEECCCC
T ss_pred HcCCCCEEEECCcC
Confidence 378998876544
|
| >4egf_A L-xylulose reductase; structural genomics, ssgcid, seattle structural genomics CEN infectious disease, oxidoreductase; 2.30A {Mycobacterium smegmatis} | Back alignment and structure |
|---|
Probab=80.04 E-value=7.5 Score=31.66 Aligned_cols=81 Identities=15% Similarity=0.173 Sum_probs=52.5
Q ss_pred CCCCCeEEEecCCCCH---HHHHHHHhCCEEEEEcCCCcHHHHHHHHHHHHH-cCCceEEEEeecCCCCcC--cCC----
Q 026274 68 RFSGANVVELGAGTSL---PGLVAAKVGSNVTLTDDSNRIEVLKNMRRVCEM-NKLNCRVMGLTWGFLDAS--IFD---- 137 (241)
Q Consensus 68 ~~~~~~VLElGcGtGl---~sl~la~~g~~V~~tD~~~~~~~l~~~~~n~~~-n~~~~~~~~l~w~~~~~~--~~~---- 137 (241)
..+++++|=-|++.|+ ++..+++.|++|+++|.++ +-++.+.+.+.. .+..+.+...|..+...- ..+
T Consensus 17 ~l~~k~vlVTGas~gIG~aia~~l~~~G~~V~~~~r~~--~~~~~~~~~l~~~~~~~~~~~~~Dv~~~~~v~~~~~~~~~ 94 (266)
T 4egf_A 17 RLDGKRALITGATKGIGADIARAFAAAGARLVLSGRDV--SELDAARRALGEQFGTDVHTVAIDLAEPDAPAELARRAAE 94 (266)
T ss_dssp CCTTCEEEETTTTSHHHHHHHHHHHHTTCEEEEEESCH--HHHHHHHHHHHHHHCCCEEEEECCTTSTTHHHHHHHHHHH
T ss_pred CCCCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEeCCH--HHHHHHHHHHHHhcCCcEEEEEecCCCHHHHHHHHHHHHH
Confidence 3578899999987763 3445556699999999985 455555444433 466777777777665320 011
Q ss_pred --CCCcEEEEcCCcC
Q 026274 138 --LNPNIILGADVFY 150 (241)
Q Consensus 138 --~~fDlIl~~dvly 150 (241)
.+.|+++.+--+.
T Consensus 95 ~~g~id~lv~nAg~~ 109 (266)
T 4egf_A 95 AFGGLDVLVNNAGIS 109 (266)
T ss_dssp HHTSCSEEEEECCCC
T ss_pred HcCCCCEEEECCCcC
Confidence 3689988665444
|
| >3rku_A Oxidoreductase YMR226C; substrate fingerprint, short chain oxidoreductase, rossmann oxidoreductase; HET: NAP; 2.60A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=80.03 E-value=24 Score=29.08 Aligned_cols=79 Identities=13% Similarity=0.156 Sum_probs=50.7
Q ss_pred CCCCeEEEecCCCCHH---HHHHHHhCC---EEEEEcCCCcHHHHHHHHHHHHHc--CCceEEEEeecCCCCc------C
Q 026274 69 FSGANVVELGAGTSLP---GLVAAKVGS---NVTLTDDSNRIEVLKNMRRVCEMN--KLNCRVMGLTWGFLDA------S 134 (241)
Q Consensus 69 ~~~~~VLElGcGtGl~---sl~la~~g~---~V~~tD~~~~~~~l~~~~~n~~~n--~~~~~~~~l~w~~~~~------~ 134 (241)
.+++++|=-|++.|+- +..+++.|+ +|++++.++ +.++.+.+.+... +..+.+...|..+... .
T Consensus 31 l~~k~~lVTGas~GIG~aia~~l~~~G~~~~~V~~~~r~~--~~~~~~~~~l~~~~~~~~~~~~~~Dv~d~~~v~~~~~~ 108 (287)
T 3rku_A 31 LAKKTVLITGASAGIGKATALEYLEASNGDMKLILAARRL--EKLEELKKTIDQEFPNAKVHVAQLDITQAEKIKPFIEN 108 (287)
T ss_dssp HTTCEEEEESTTSHHHHHHHHHHHHHHTTCSEEEEEESCH--HHHHHHHHHHHHHCTTCEEEEEECCTTCGGGHHHHHHT
T ss_pred cCCCEEEEecCCChHHHHHHHHHHHcCCCCceEEEEECCH--HHHHHHHHHHHhhCCCCeEEEEECCCCCHHHHHHHHHH
Confidence 4678999999876642 333445576 999999985 4666665555543 4566677777765432 1
Q ss_pred cC--CCCCcEEEEcCCc
Q 026274 135 IF--DLNPNIILGADVF 149 (241)
Q Consensus 135 ~~--~~~fDlIl~~dvl 149 (241)
.. -++.|+++.+--+
T Consensus 109 ~~~~~g~iD~lVnnAG~ 125 (287)
T 3rku_A 109 LPQEFKDIDILVNNAGK 125 (287)
T ss_dssp SCGGGCSCCEEEECCCC
T ss_pred HHHhcCCCCEEEECCCc
Confidence 11 1368999876554
|
| >3tnl_A Shikimate dehydrogenase; structural genomics, center for structural genomics of infec diseases, csgid; HET: NAD SKM; 1.45A {Listeria monocytogenes} PDB: 3toz_A* | Back alignment and structure |
|---|
Probab=80.02 E-value=4.8 Score=34.37 Aligned_cols=135 Identities=11% Similarity=0.039 Sum_probs=66.2
Q ss_pred HHHHHHHhccCCCCCCeEEEecCCCC---HHHHHHHHhCC-EEEEEcCCCc-HHHHHHHHHHHHHcCCceEEEEeecCCC
Q 026274 57 ILAEYVWQQRYRFSGANVVELGAGTS---LPGLVAAKVGS-NVTLTDDSNR-IEVLKNMRRVCEMNKLNCRVMGLTWGFL 131 (241)
Q Consensus 57 ~L~~~l~~~~~~~~~~~VLElGcGtG---l~sl~la~~g~-~V~~tD~~~~-~~~l~~~~~n~~~n~~~~~~~~l~w~~~ 131 (241)
-+.+-|.......+++++|=+|+| | .+...|++.|+ +|+.++.++. .+-.+.+.+.+.... .+.+...+|.+.
T Consensus 140 Gf~~~L~~~~~~l~gk~~lVlGaG-G~g~aia~~L~~~Ga~~V~i~nR~~~~~~~a~~la~~~~~~~-~~~~~~~~~~~~ 217 (315)
T 3tnl_A 140 GYMRALKEAGHDIIGKKMTICGAG-GAATAICIQAALDGVKEISIFNRKDDFYANAEKTVEKINSKT-DCKAQLFDIEDH 217 (315)
T ss_dssp HHHHHHHHTTCCCTTSEEEEECCS-HHHHHHHHHHHHTTCSEEEEEECSSTTHHHHHHHHHHHHHHS-SCEEEEEETTCH
T ss_pred HHHHHHHHcCCCccCCEEEEECCC-hHHHHHHHHHHHCCCCEEEEEECCCchHHHHHHHHHHhhhhc-CCceEEeccchH
Confidence 334445444445689999999998 4 33445666798 8999998831 123333333332221 123344455432
Q ss_pred Cc-CcCCCCCcEEEEcCCcC-CCc-cHHHHHHHHHHHhhcCCCeEEE-EEeeccCchhHHHHHHHHcCCEEE
Q 026274 132 DA-SIFDLNPNIILGADVFY-DAS-AFDDLFATITYLLQSSPGSVFI-TTYHNRSGHHLIEFLMVKWGLKCV 199 (241)
Q Consensus 132 ~~-~~~~~~fDlIl~~dvly-~~~-~~~~ll~~~~~lL~~~~~~~~~-~~~~~r~~~~~~~~~~~~~g~~~~ 199 (241)
.. ...-..+|+||.+-.+= ++. +..++. ....++ ++.+++ +.|.++.+ .+...+++.|..+.
T Consensus 218 ~~l~~~l~~aDiIINaTp~Gm~~~~~~~p~~--~~~~l~--~~~~V~DlvY~P~~T--~ll~~A~~~G~~~~ 283 (315)
T 3tnl_A 218 EQLRKEIAESVIFTNATGVGMKPFEGETLLP--SADMLR--PELIVSDVVYKPTKT--RLLEIAEEQGCQTL 283 (315)
T ss_dssp HHHHHHHHTCSEEEECSSTTSTTSTTCCSCC--CGGGCC--TTCEEEESCCSSSSC--HHHHHHHHTTCEEE
T ss_pred HHHHhhhcCCCEEEECccCCCCCCCCCCCCC--cHHHcC--CCCEEEEeccCCCCC--HHHHHHHHCCCeEe
Confidence 10 00012689999775542 111 011110 112343 344332 44555444 23444567787654
|
Homologous Structure Domains
Structure Domains Detected by RPS-BLAST
Original result of RPS-BLAST against SCOP70(version1.75) database
No hit with e-value below 0.005
Homologous Domains Detected by HHsearch
Original result of HHsearch against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 241 | |||
| d2nxca1 | 254 | PrmA-like protein TTHA0656 (TT0836) {Thermus therm | 99.82 | |
| d1vl5a_ | 231 | Hypothetical protein BH2331 {Bacillus halodurans [ | 99.75 | |
| d1xxla_ | 234 | Hypothetical protein YcgJ {Bacillus subtilis [TaxI | 99.75 | |
| d1dusa_ | 194 | Hypothetical protein MJ0882 {Archaeon Methanococcu | 99.73 | |
| d2o57a1 | 282 | Putative sarcosine dimethylglycine methyltransfera | 99.69 | |
| d1ve3a1 | 226 | Hypothetical protein PH0226 {Archaeon Pyrococcus h | 99.69 | |
| d1wzna1 | 251 | Hypothetical methyltransferase PH1305 {Archaeon Py | 99.66 | |
| d1nkva_ | 245 | Hypothetical Protein YjhP {Escherichia coli [TaxId | 99.66 | |
| d2p7ia1 | 225 | Hypothetical protein ECA1738 {Erwinia carotovora [ | 99.65 | |
| d2ex4a1 | 222 | Adrenal gland protein AD-003 (C9orf32) {Human (Hom | 99.64 | |
| d2avna1 | 246 | Hypothetical methyltransferase TM1389 {Thermotoga | 99.6 | |
| d1l3ia_ | 186 | Precorrin-6Y methyltransferase (CbiT) {Archaeon Me | 99.59 | |
| d1y8ca_ | 246 | Putative methyltransferase CAC2371 {Clostridium ac | 99.58 | |
| d1wy7a1 | 201 | Hypothetical protein PH1948 {Archaeon Pyrococcus h | 99.58 | |
| d2bzga1 | 229 | Thiopurine S-methyltransferase {Human (Homo sapien | 99.56 | |
| d2i6ga1 | 198 | Putative methyltransferase TehB {Salmonella typhim | 99.56 | |
| d2gh1a1 | 281 | Methyltransferase BC2162 {Bacillus cereus [TaxId: | 99.56 | |
| d2b3ta1 | 274 | N5-glutamine methyltransferase, HemK {Escherichia | 99.55 | |
| d1xtpa_ | 254 | Hypothetical protein Lmaj004091aaa (LmjF30.0810) { | 99.54 | |
| d2esra1 | 152 | Putative methyltransferase SPy1538 {Streptococcus | 99.52 | |
| d1g6q1_ | 328 | Arginine methyltransferase, HMT1 {Baker's yeast (S | 99.51 | |
| d2a14a1 | 257 | Indolethylamine N-methyltransferase, INMT {Human ( | 99.51 | |
| d1oria_ | 316 | Protein arginine N-methyltransferase 1, PRMT1 {Rat | 99.5 | |
| d1xvaa_ | 292 | Glycine N-methyltransferase {Rat (Rattus norvegicu | 99.5 | |
| d1pjza_ | 201 | Thiopurine S-methyltransferase {Pseudomonas syring | 99.49 | |
| d1im8a_ | 225 | Hypothetical protein HI0319 (YecO) {Haemophilus in | 99.49 | |
| d1vlma_ | 208 | Possible histamine N-methyltransferase TM1293 {The | 99.48 | |
| d2fk8a1 | 280 | Methoxy mycolic acid synthase 4, Mma4 {Mycobacteri | 99.48 | |
| d2fyta1 | 311 | Protein arginine N-methyltransferase 3, PRMT3 {Hum | 99.47 | |
| d1ri5a_ | 252 | mRNA cap (Guanine N-7) methyltransferase {Fungus ( | 99.47 | |
| d1ws6a1 | 171 | Methyltransferase TTHA0928 {Thermus thermophilus [ | 99.47 | |
| d1kpia_ | 291 | CmaA2 {Mycobacterium tuberculosis [TaxId: 1773]} | 99.47 | |
| d1g8sa_ | 230 | Fibrillarin homologue {Archaeon Methanococcus jann | 99.46 | |
| d1kpga_ | 285 | CmaA1 {Mycobacterium tuberculosis [TaxId: 1773]} | 99.46 | |
| d1ne2a_ | 197 | Hypothetical protein Ta1320 {Archaeon Thermoplasma | 99.46 | |
| d1zx0a1 | 229 | Guanidinoacetate methyltransferase {Human (Homo sa | 99.45 | |
| d1tw3a2 | 253 | Carminomycin 4-O-methyltransferase {Streptomyces p | 99.41 | |
| d1o54a_ | 266 | Hypothetical protein TM0748 {Thermotoga maritima [ | 99.4 | |
| d1jqea_ | 280 | Histamine methyltransferase {Human (Homo sapiens) | 99.39 | |
| d1yb2a1 | 250 | Hypothetical protein Ta0852 {Thermoplasma acidophi | 99.38 | |
| d1nt2a_ | 209 | Fibrillarin homologue {Archaeon Archaeoglobus fulg | 99.37 | |
| d2igta1 | 309 | Putative methyltransferase Atu0340 {Agrobacterium | 99.37 | |
| d2h00a1 | 250 | Methyltransferase 10 domain containing protein MET | 99.35 | |
| d1uwva2 | 358 | rRNA (Uracil-5-)-methyltransferase RumA, catalytic | 99.34 | |
| d2fpoa1 | 183 | Methylase YhhF {Escherichia coli [TaxId: 562]} | 99.32 | |
| d2g72a1 | 263 | Phenylethanolamine N-methyltransferase, PNMTase {H | 99.31 | |
| d1wxxa2 | 318 | Hypothetical protein TTHA1280, middle and C-termin | 99.29 | |
| d1nv8a_ | 271 | N5-glutamine methyltransferase, HemK {Thermotoga m | 99.29 | |
| d2fhpa1 | 182 | Putative methylase EF2452 {Enterococcus faecalis [ | 99.27 | |
| d2fcaa1 | 204 | tRNA (guanine-N(7)-)-methyltransferase TrmB {Bacil | 99.26 | |
| d1i9ga_ | 264 | Probable methyltransferase Rv2118c {Mycobacterium | 99.25 | |
| d2frna1 | 260 | Hypothetical protein PH0793 {Pyrococcus horikoshii | 99.25 | |
| d1dl5a1 | 213 | Protein-L-isoaspartyl O-methyltransferase {Thermot | 99.24 | |
| d1qzza2 | 256 | Aclacinomycin-10-hydroxylase RdmB {Streptomyces pu | 99.23 | |
| d2as0a2 | 324 | Hypothetical protein PH1915, middle and C-terminal | 99.22 | |
| d2b78a2 | 317 | Hypothetical protein SMu776, middle and C-terminal | 99.22 | |
| d1yzha1 | 204 | tRNA (guanine-N(7)-)-methyltransferase TrmB {Strep | 99.18 | |
| d1vbfa_ | 224 | Protein-L-isoaspartyl O-methyltransferase {Sulfolo | 99.17 | |
| d1p91a_ | 268 | rRNA methyltransferase RlmA {Escherichia coli [Tax | 99.16 | |
| d1g8aa_ | 227 | Fibrillarin homologue {Archaeon Pyrococcus horikos | 99.16 | |
| d2b25a1 | 324 | Hypothetical protein FLJ20628 {Human (Homo sapiens | 99.16 | |
| d2ifta1 | 183 | Putative methylase HI0767 {Haemophilus influenzae | 99.15 | |
| d1i1na_ | 224 | Protein-L-isoaspartyl O-methyltransferase {Human ( | 99.14 | |
| d1jg1a_ | 215 | Protein-L-isoaspartyl O-methyltransferase {Archaeo | 99.03 | |
| d1nw3a_ | 328 | Catalytic, N-terminal domain of histone methyltran | 98.96 | |
| d1r18a_ | 223 | Protein-L-isoaspartyl O-methyltransferase {Fruit f | 98.89 | |
| d1u2za_ | 406 | Catalytic, N-terminal domain of histone methyltran | 98.85 | |
| d2avda1 | 219 | COMT domain-containing protein 1, COMTD1 {Human (H | 98.76 | |
| d2cl5a1 | 214 | Catechol O-methyltransferase, COMT {Rat (Rattus no | 98.74 | |
| d2f8la1 | 328 | Hypothetical protein Lmo1582 {Listeria monocytogen | 98.73 | |
| d1susa1 | 227 | Caffeoyl-CoA O-methyltransferase {Alfalfa (Medicag | 98.62 | |
| d1fp1d2 | 244 | Chalcone O-methyltransferase {Alfalfa (Medicago sa | 98.51 | |
| d1jsxa_ | 207 | Glucose-inhibited division protein B (GidB) {Esche | 98.43 | |
| d1qama_ | 235 | rRNA adenine dimethylase {Bacillus subtilis, Ermc' | 98.4 | |
| d1af7a2 | 193 | Chemotaxis receptor methyltransferase CheR, C-term | 98.35 | |
| d1xdza_ | 239 | Glucose-inhibited division protein B (GidB) {Bacil | 98.34 | |
| d1zq9a1 | 278 | Probable dimethyladenosine transferase {Human (Hom | 98.33 | |
| d1fp2a2 | 244 | Isoflavone O-methyltransferase {Alfalfa (Medicago | 98.31 | |
| d2ih2a1 | 223 | DNA methylase TaqI, N-terminal domain {Thermus aqu | 98.2 | |
| d1kyza2 | 243 | Caffeic acid/5-hydroxyferulic acid 3/5-O-methyltra | 98.19 | |
| d1m6ya2 | 192 | TM0872, methyltransferase domain {Thermotoga marit | 98.18 | |
| d1yuba_ | 245 | rRNA adenine dimethylase {Streptococcus pneumoniae | 98.14 | |
| d2dula1 | 375 | N(2),N(2)-dimethylguanosine tRNA methyltransferase | 98.14 | |
| d2okca1 | 425 | Type I restriction enzyme StySJI M protein {Bacter | 98.07 | |
| d1uira_ | 312 | Spermidine synthase {Thermus thermophilus [TaxId: | 97.99 | |
| d1mjfa_ | 276 | Putative spermidine synthetase PF0127 (SpeE) {Arch | 97.87 | |
| d1qyra_ | 252 | High level kasugamycin resistance protein KsgA {Es | 97.8 | |
| d1inla_ | 295 | Spermidine synthase {Thermotoga maritima [TaxId: 2 | 97.63 | |
| d2oyra1 | 250 | Hypothetical protein YhiQ {Shigella flexneri [TaxI | 97.47 | |
| d2ar0a1 | 524 | M.EcoKI {Escherichia coli [TaxId: 562]} | 97.46 | |
| d1sqga2 | 284 | Ribosomal RNA small subunit methyltransferase B, R | 97.44 | |
| d1iy9a_ | 274 | Spermidine synthase {Bacillus subtilis [TaxId: 142 | 97.42 | |
| d1xj5a_ | 290 | Spermidine synthase {Thale cress (Arabidopsis thal | 97.4 | |
| d1ej0a_ | 180 | RNA methyltransferase FtsJ {Escherichia coli [TaxI | 97.31 | |
| d2o07a1 | 285 | Spermidine synthase {Human (Homo sapiens) [TaxId: | 97.27 | |
| d1ixka_ | 313 | Hypothetical methyltransferase PH1374 {Archaeon Py | 97.2 | |
| d2b2ca1 | 312 | Spermidine synthase {Caenorhabditis elegans [TaxId | 97.17 | |
| d2p41a1 | 257 | An RNA cap (nucleoside-2'-O-)-methyltransferase do | 97.02 | |
| d2bm8a1 | 232 | Cephalosporin hydroxylase CmcI {Streptomyces clavu | 96.97 | |
| d2b9ea1 | 293 | NOL1R {Human (Homo sapiens) [TaxId: 9606]} | 96.96 | |
| d1wg8a2 | 182 | TM0872, methyltransferase domain {Thermus thermoph | 96.89 | |
| d1ae1a_ | 258 | Tropinone reductase {Jimsonweed (Datura stramonium | 95.54 | |
| d1i4wa_ | 322 | Transcription factor sc-mtTFB {Baker's yeast (Sacc | 95.52 | |
| d1e3ja2 | 170 | Ketose reductase (sorbitol dehydrogenase) {Silverl | 95.44 | |
| d1yb1a_ | 244 | 17-beta-hydroxysteroid dehydrogenase type XI {Huma | 95.26 | |
| d1xq1a_ | 259 | Tropinone reductase {Thale cress (Arabidopsis thal | 95.21 | |
| d1piwa2 | 168 | Cinnamyl alcohol dehydrogenase, ADH6 {Baker's yeas | 95.11 | |
| d2ae2a_ | 259 | Tropinone reductase {Jimsonweed (Datura stramonium | 94.93 | |
| d1pjca1 | 168 | L-alanine dehydrogenase {Phormidium lapideum [TaxI | 94.85 | |
| d1dcta_ | 324 | DNA methylase HaeIII {Haemophilus aegyptius [TaxId | 94.39 | |
| d2c7pa1 | 327 | DNA methylase HhaI {Haemophilus haemolyticus [TaxI | 94.33 | |
| d1g60a_ | 256 | Methyltransferase mboII {Moraxella bovis [TaxId: 4 | 94.28 | |
| d2c07a1 | 251 | beta-keto acyl carrier protein reductase {Malaria | 94.21 | |
| d1vl8a_ | 251 | Gluconate 5-dehydrogenase {Thermotoga maritima [Ta | 94.19 | |
| d1eg2a_ | 279 | m.RsrI N6 adenosine-specific DNA methyltransferase | 94.14 | |
| d1xu9a_ | 269 | 11-beta-hydroxysteroid dehydrogenase 1 {Human (Hom | 94.02 | |
| d1zema1 | 260 | Xylitol dehydrogenase {Gluconobacter oxydans [TaxI | 93.79 | |
| d1llua2 | 166 | Alcohol dehydrogenase {Pseudomonas aeruginosa [Tax | 93.72 | |
| d1g0oa_ | 272 | 1,3,8-trihydroxynaphtalene reductase (THNR, naphto | 93.68 | |
| d1vj0a2 | 182 | Hypothetical protein TM0436 {Thermotoga maritima [ | 93.65 | |
| d1nyta1 | 170 | Shikimate 5-dehydrogenase AroE {Escherichia coli [ | 93.6 | |
| d1booa_ | 320 | m.PvuII N4 cytosine-specific DNA methyltransferase | 93.37 | |
| d1bg6a2 | 184 | N-(1-D-carboxylethyl)-L-norvaline dehydrogenase {A | 93.32 | |
| d1kola2 | 195 | Formaldehyde dehydrogenase {Pseudomonas putida [Ta | 93.3 | |
| d1x1ta1 | 260 | D(-)-3-hydroxybutyrate dehydrogenase {Pseudomonas | 93.06 | |
| d1jqba2 | 174 | Bacterial secondary alcohol dehydrogenase {Clostri | 92.88 | |
| d1zkda1 | 365 | Hypothetical protein RPA4359 {Rhodopseudomonas pal | 92.86 | |
| d1luaa1 | 191 | Methylene-tetrahydromethanopterin dehydrogenase {M | 92.36 | |
| d1l7da1 | 183 | Nicotinamide nucleotide transhydrogenase dI compon | 92.0 | |
| d1fmca_ | 255 | 7-alpha-hydroxysteroid dehydrogenase {Escherichia | 91.95 | |
| d1geea_ | 261 | Glucose dehydrogenase {Bacillus megaterium [TaxId: | 91.8 | |
| d1ja9a_ | 259 | 1,3,6,8-tetrahydroxynaphthalene reductase {Rice bl | 91.62 | |
| d1d1ta2 | 176 | Alcohol dehydrogenase {Human (Homo sapiens), diffe | 91.59 | |
| d1xg5a_ | 257 | Putative dehydrogenase ARPG836 (MGC4172) {Human (H | 91.35 | |
| d1q7ba_ | 243 | beta-keto acyl carrier protein reductase {Escheric | 91.27 | |
| d1h5qa_ | 260 | Mannitol dehydrogenase {Mushroom (Agaricus bisporu | 91.23 | |
| d1rjwa2 | 168 | Alcohol dehydrogenase {Bacillus stearothermophilus | 90.93 | |
| d2gdza1 | 254 | 15-hydroxyprostaglandin dehydrogenase, PGDH {Human | 90.83 | |
| d1e3ia2 | 174 | Alcohol dehydrogenase {Mouse (Mus musculus), class | 90.82 | |
| d1hxha_ | 253 | 3beta/17beta hydroxysteroid dehydrogenase {Comamon | 90.66 | |
| d1p77a1 | 171 | Shikimate 5-dehydrogenase AroE {Haemophilus influe | 90.47 | |
| d1w6ua_ | 294 | 2,4-dienoyl-CoA reductase, mitochondrial (DECR) {H | 90.14 | |
| d1o9ga_ | 249 | rRNA methyltransferase AviRa {Streptomyces viridoc | 90.07 | |
| d1g55a_ | 343 | DNMT2 {Human (Homo sapiens) [TaxId: 9606]} | 90.04 | |
| d1gz6a_ | 302 | (3R)-hydroxyacyl-CoA dehydrogenase domain of estra | 89.91 | |
| d1xhla_ | 274 | Hypothetical protein F25D1.5 {Caenorhabditis elega | 89.84 | |
| d1p0fa2 | 174 | Alcohol dehydrogenase {Frog (Rana perezi) [TaxId: | 89.83 | |
| d1xkqa_ | 272 | Hypothetical protein R05D8.7 {Caenorhabditis elega | 89.6 | |
| d1uufa2 | 168 | Hypothetical protein YahK {Escherichia coli [TaxId | 89.54 | |
| d1spxa_ | 264 | Glucose dehydrogenase (5l265) {Nematode (Caenorhab | 89.44 | |
| d2jfga1 | 93 | UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase | 89.32 | |
| d2g5ca2 | 171 | Prephenate dehydrogenase TyrA {Aquifex aeolicus [T | 89.23 | |
| d2bgka1 | 268 | Rhizome secoisolariciresinol dehydrogenase {Mayapp | 89.1 | |
| d1iy8a_ | 258 | Levodione reductase {Corynebacterium aquaticum [Ta | 89.08 | |
| d2rhca1 | 257 | beta-keto acyl carrier protein reductase {Streptom | 88.81 | |
| d1yb5a2 | 174 | Quinone oxidoreductase {Human (Homo sapiens) [TaxI | 88.68 | |
| d1pl8a2 | 171 | Ketose reductase (sorbitol dehydrogenase) {Human ( | 88.68 | |
| d1xa0a2 | 176 | B. subtilis YhfP homologue {Bacillus stearothermop | 88.37 | |
| d1zk4a1 | 251 | R-specific alcohol dehydrogenase {Lactobacillus br | 87.95 | |
| d1edoa_ | 244 | beta-keto acyl carrier protein reductase {Oil seed | 87.94 | |
| d1hdca_ | 254 | 3-alpha,20-beta-hydroxysteroid dehydrogenase {Stre | 87.64 | |
| d1yxma1 | 297 | Peroxisomal trans 2-enoyl CoA reductase {Human (Ho | 87.55 | |
| d1ulsa_ | 242 | beta-keto acyl carrier protein reductase {Thermus | 87.45 | |
| d2jhfa2 | 176 | Alcohol dehydrogenase {Horse (Equus caballus) [Tax | 87.32 | |
| d2ew8a1 | 247 | (s)-1-phenylethanol dehydrogenase {Azoarcus sp. eb | 87.23 | |
| d1p3da1 | 96 | UDP-N-acetylmuramate-alanine ligase MurC {Haemophi | 87.21 | |
| d1f0ya2 | 192 | Short chain L-3-hydroxyacyl CoA dehydrogenase {Hum | 86.84 | |
| d1e5qa1 | 182 | Saccharopine reductase {Rice blast fungus (Magnapo | 86.42 | |
| d1gega_ | 255 | meso-2,3-butanediol dehydrogenase {Klebsiella pneu | 86.4 | |
| d1nffa_ | 244 | Putative oxidoreductase Rv2002 {Mycobacterium tube | 86.23 | |
| d2fzwa2 | 176 | Alcohol dehydrogenase {Human (Homo sapiens), diffe | 86.12 | |
| d1f8fa2 | 174 | Benzyl alcohol dehydrogenase {Acinetobacter calcoa | 86.08 | |
| d1k2wa_ | 256 | Sorbitol dehydrogenase {Rhodobacter sphaeroides [T | 85.94 | |
| d2a4ka1 | 241 | beta-keto acyl carrier protein reductase {Thermus | 85.25 | |
| d1sbya1 | 254 | Drosophila alcohol dehydrogenase {Fly (Drosophila | 85.16 | |
| d1tt7a2 | 167 | Hypothetical protein YhfP {Bacillus subtilis [TaxI | 85.1 | |
| d1gpja2 | 159 | Glutamyl tRNA-reductase middle domain {Archaeon Me | 84.91 | |
| d1j6ua1 | 89 | UDP-N-acetylmuramate-alanine ligase MurC {Thermoto | 84.31 | |
| d1ebda2 | 117 | Dihydrolipoamide dehydrogenase {Bacillus stearothe | 84.27 | |
| d1bdba_ | 276 | Cis-biphenyl-2,3-dihydrodiol-2,3-dehydrogenase {Ps | 84.21 | |
| d1qsga_ | 258 | Enoyl-ACP reductase {Escherichia coli [TaxId: 562] | 84.19 | |
| d2f1ka2 | 165 | Prephenate dehydrogenase TyrA {Synechocystis sp. p | 83.97 | |
| d1iz0a2 | 171 | Quinone oxidoreductase {Thermus thermophilus [TaxI | 83.91 | |
| d1npya1 | 167 | Shikimate 5-dehydrogenase-like protein HI0607 {Hae | 83.8 | |
| d1ps9a3 | 179 | 2,4-dienoyl-CoA reductase, middle domain {Escheric | 83.64 | |
| d1mv8a2 | 202 | GDP-mannose 6-dehydrogenase {Pseudomonas aeruginos | 83.5 | |
| d2py6a1 | 395 | Methyltransferase FkbM {Methylobacillus flagellatu | 83.27 | |
| d1qora2 | 179 | Quinone oxidoreductase {Escherichia coli [TaxId: 5 | 82.98 | |
| d1gesa2 | 116 | Glutathione reductase {Escherichia coli [TaxId: 56 | 82.92 | |
| d1cdoa2 | 175 | Alcohol dehydrogenase {Cod (Gadus callarias) [TaxI | 81.54 | |
| d1lvla2 | 115 | Dihydrolipoamide dehydrogenase {Pseudomonas putida | 81.11 | |
| d1nvta1 | 177 | Shikimate 5-dehydrogenase AroE {Archaeon Methanoco | 80.76 | |
| d1h2ba2 | 172 | Alcohol dehydrogenase {Archaeon Aeropyrum pernix [ | 80.73 | |
| d1ydea1 | 250 | Retinal dehydrogenase/reductase 3 {Human (Homo sap | 80.69 | |
| d1vi2a1 | 182 | Putative shikimate dehydrogenase YdiB {Escherichia | 80.2 |
| >d2nxca1 c.66.1.39 (A:1-254) PrmA-like protein TTHA0656 (TT0836) {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Ribosomal protein L11 methyltransferase PrmA domain: PrmA-like protein TTHA0656 (TT0836) species: Thermus thermophilus [TaxId: 274]
Probab=99.82 E-value=5.2e-20 Score=154.44 Aligned_cols=155 Identities=16% Similarity=0.138 Sum_probs=119.8
Q ss_pred CceEEEEeccCcCCcceEEeccHHHHHHHHHhccCCCCCCeEEEecCCCCHHHHHHHHhCCEEEEEcCCCcHHHHHHHHH
Q 026274 33 PSFSIAIIENMKEEYGLFVWPCSVILAEYVWQQRYRFSGANVVELGAGTSLPGLVAAKVGSNVTLTDDSNRIEVLKNMRR 112 (241)
Q Consensus 33 ~~~~i~i~~~~~~~~g~~~W~~s~~L~~~l~~~~~~~~~~~VLElGcGtGl~sl~la~~g~~V~~tD~~~~~~~l~~~~~ 112 (241)
....|.|...++.++|.+ |.+.++.++|.+.. .+|++|||+|||+|.+++.+++.|++|+++|+++ +|++.+++
T Consensus 87 ~~~~i~i~pg~aFGTG~H--~TT~l~l~~l~~~~--~~g~~VLDiGcGsG~l~i~aa~~g~~V~gvDis~--~av~~A~~ 160 (254)
T d2nxca1 87 AEIPLVIEPGMAFGTGHH--ETTRLALKALARHL--RPGDKVLDLGTGSGVLAIAAEKLGGKALGVDIDP--MVLPQAEA 160 (254)
T ss_dssp SSEEEECCCC-----CCS--HHHHHHHHHHHHHC--CTTCEEEEETCTTSHHHHHHHHTTCEEEEEESCG--GGHHHHHH
T ss_pred cceEEEEccccccCcccc--chhhHHHHHHHhhc--CccCEEEEcccchhHHHHHHHhcCCEEEEEECCh--HHHHHHHH
Confidence 467788877777777777 89999999998653 4789999999999999999999999999999997 59999999
Q ss_pred HHHHcCCceEEEEeecCCCCcCcCCCCCcEEEEcCCcCCCccHHHHHHHHHHHhhcCCCeEEEEEeeccCchhHHHHHHH
Q 026274 113 VCEMNKLNCRVMGLTWGFLDASIFDLNPNIILGADVFYDASAFDDLFATITYLLQSSPGSVFITTYHNRSGHHLIEFLMV 192 (241)
Q Consensus 113 n~~~n~~~~~~~~l~w~~~~~~~~~~~fDlIl~~dvly~~~~~~~ll~~~~~lL~~~~~~~~~~~~~~r~~~~~~~~~~~ 192 (241)
|++.|+++.++...++.+ .....+||+|+++ .....+..+++.+.++|+ |||.++++.-.......+...++
T Consensus 161 na~~n~~~~~~~~~d~~~---~~~~~~fD~V~an---i~~~~l~~l~~~~~~~Lk--pGG~lilSgil~~~~~~v~~~~~ 232 (254)
T d2nxca1 161 NAKRNGVRPRFLEGSLEA---ALPFGPFDLLVAN---LYAELHAALAPRYREALV--PGGRALLTGILKDRAPLVREAMA 232 (254)
T ss_dssp HHHHTTCCCEEEESCHHH---HGGGCCEEEEEEE---CCHHHHHHHHHHHHHHEE--EEEEEEEEEEEGGGHHHHHHHHH
T ss_pred HHHHcCCceeEEeccccc---cccccccchhhhc---cccccHHHHHHHHHHhcC--CCcEEEEEecchhhHHHHHHHHH
Confidence 999999998887766543 2334689999986 334467888999999998 67777765333334445566678
Q ss_pred HcCCEEEEE
Q 026274 193 KWGLKCVKL 201 (241)
Q Consensus 193 ~~g~~~~~i 201 (241)
++||+....
T Consensus 233 ~~Gf~~~~~ 241 (254)
T d2nxca1 233 GAGFRPLEE 241 (254)
T ss_dssp HTTCEEEEE
T ss_pred HCCCEEEEE
Confidence 899998765
|
| >d1vl5a_ c.66.1.41 (A:) Hypothetical protein BH2331 {Bacillus halodurans [TaxId: 86665]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: UbiE/COQ5-like domain: Hypothetical protein BH2331 species: Bacillus halodurans [TaxId: 86665]
Probab=99.75 E-value=1.3e-17 Score=136.36 Aligned_cols=105 Identities=13% Similarity=0.046 Sum_probs=89.5
Q ss_pred CCCCCCeEEEecCCCCHHHHHHHHhCCEEEEEcCCCcHHHHHHHHHHHHHcCC-ceEEEEeecCCCCcCcCCCCCcEEEE
Q 026274 67 YRFSGANVVELGAGTSLPGLVAAKVGSNVTLTDDSNRIEVLKNMRRVCEMNKL-NCRVMGLTWGFLDASIFDLNPNIILG 145 (241)
Q Consensus 67 ~~~~~~~VLElGcGtGl~sl~la~~g~~V~~tD~~~~~~~l~~~~~n~~~n~~-~~~~~~l~w~~~~~~~~~~~fDlIl~ 145 (241)
...++.+|||||||+|..+..+++.|++|+++|+|+ +|++.+++++..++. ++++...++.+. +..+++||+|++
T Consensus 12 ~l~~~~rVLDiGcG~G~~~~~l~~~~~~v~gvD~s~--~~i~~A~~~~~~~~~~~i~~~~~d~~~l--~~~~~~fD~v~~ 87 (231)
T d1vl5a_ 12 ALKGNEEVLDVATGGGHVANAFAPFVKKVVAFDLTE--DILKVARAFIEGNGHQQVEYVQGDAEQM--PFTDERFHIVTC 87 (231)
T ss_dssp TCCSCCEEEEETCTTCHHHHHHGGGSSEEEEEESCH--HHHHHHHHHHHHTTCCSEEEEECCC-CC--CSCTTCEEEEEE
T ss_pred CCCCcCEEEEecccCcHHHHHHHHhCCEEEEEECCH--HHHhhhhhcccccccccccccccccccc--cccccccccccc
Confidence 445678999999999999999999999999999995 799999999887765 578888887764 344678999999
Q ss_pred cCCcCCCccHHHHHHHHHHHhhcCCCeEEEEE
Q 026274 146 ADVFYDASAFDDLFATITYLLQSSPGSVFITT 177 (241)
Q Consensus 146 ~dvly~~~~~~~ll~~~~~lL~~~~~~~~~~~ 177 (241)
..+++|.++...+++.+.++|+ |||.+++.
T Consensus 88 ~~~l~~~~d~~~~l~~~~r~Lk--pgG~l~i~ 117 (231)
T d1vl5a_ 88 RIAAHHFPNPASFVSEAYRVLK--KGGQLLLV 117 (231)
T ss_dssp ESCGGGCSCHHHHHHHHHHHEE--EEEEEEEE
T ss_pred cccccccCCHHHHHHHHHHhcC--CCcEEEEE
Confidence 9999999999999999999999 66755543
|
| >d1xxla_ c.66.1.41 (A:) Hypothetical protein YcgJ {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: UbiE/COQ5-like domain: Hypothetical protein YcgJ species: Bacillus subtilis [TaxId: 1423]
Probab=99.75 E-value=1.1e-17 Score=137.74 Aligned_cols=112 Identities=15% Similarity=0.108 Sum_probs=94.9
Q ss_pred HHHHhccCCCCCCeEEEecCCCCHHHHHHHHhCCEEEEEcCCCcHHHHHHHHHHHHHcCC-ceEEEEeecCCCCcCcCCC
Q 026274 60 EYVWQQRYRFSGANVVELGAGTSLPGLVAAKVGSNVTLTDDSNRIEVLKNMRRVCEMNKL-NCRVMGLTWGFLDASIFDL 138 (241)
Q Consensus 60 ~~l~~~~~~~~~~~VLElGcGtGl~sl~la~~g~~V~~tD~~~~~~~l~~~~~n~~~n~~-~~~~~~l~w~~~~~~~~~~ 138 (241)
+++.......+|.+|||||||||.++..+++.+++|+++|+|+ +|++.+++++..++. ++.+...+..+. +..++
T Consensus 6 ~~l~~~~~~~~~~rILDiGcGtG~~~~~la~~~~~v~gvD~S~--~~l~~A~~~~~~~~~~~~~~~~~d~~~~--~~~~~ 81 (234)
T d1xxla_ 6 GLMIKTAECRAEHRVLDIGAGAGHTALAFSPYVQECIGVDATK--EMVEVASSFAQEKGVENVRFQQGTAESL--PFPDD 81 (234)
T ss_dssp HHHHHHHTCCTTCEEEEESCTTSHHHHHHGGGSSEEEEEESCH--HHHHHHHHHHHHHTCCSEEEEECBTTBC--CSCTT
T ss_pred HHHHHHhCCCCCCEEEEeCCcCcHHHHHHHHhCCeEEEEeCCh--hhhhhhhhhhcccccccccccccccccc--ccccc
Confidence 4455555667889999999999999999999999999999995 699999999988876 577887777653 34467
Q ss_pred CCcEEEEcCCcCCCccHHHHHHHHHHHhhcCCCeEEEEE
Q 026274 139 NPNIILGADVFYDASAFDDLFATITYLLQSSPGSVFITT 177 (241)
Q Consensus 139 ~fDlIl~~dvly~~~~~~~ll~~~~~lL~~~~~~~~~~~ 177 (241)
+||+|+++.+++|.++...+++.+.++|+ |||.+++.
T Consensus 82 ~fD~v~~~~~l~~~~d~~~~l~~~~r~Lk--pgG~~~~~ 118 (234)
T d1xxla_ 82 SFDIITCRYAAHHFSDVRKAVREVARVLK--QDGRFLLV 118 (234)
T ss_dssp CEEEEEEESCGGGCSCHHHHHHHHHHHEE--EEEEEEEE
T ss_pred ccceeeeeceeecccCHHHHHHHHHHeeC--CCcEEEEE
Confidence 99999999999999999999999999999 66766654
|
| >d1dusa_ c.66.1.4 (A:) Hypothetical protein MJ0882 {Archaeon Methanococcus jannaschii [TaxId: 2190]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Hypothetical protein MJ0882 domain: Hypothetical protein MJ0882 species: Archaeon Methanococcus jannaschii [TaxId: 2190]
Probab=99.73 E-value=2.5e-17 Score=132.30 Aligned_cols=132 Identities=18% Similarity=0.206 Sum_probs=98.0
Q ss_pred EeccHHHHHHHHHhccCCCCCCeEEEecCCCCHHHHHHHHhCCEEEEEcCCCcHHHHHHHHHHHHHcCCc---eEEEEee
Q 026274 51 VWPCSVILAEYVWQQRYRFSGANVVELGAGTSLPGLVAAKVGSNVTLTDDSNRIEVLKNMRRVCEMNKLN---CRVMGLT 127 (241)
Q Consensus 51 ~W~~s~~L~~~l~~~~~~~~~~~VLElGcGtGl~sl~la~~g~~V~~tD~~~~~~~l~~~~~n~~~n~~~---~~~~~l~ 127 (241)
++.++.+|.+.+ ...++++|||+|||+|.+++.+++.+.+|+++|+++ .+++.+++|++.|++. +++...|
T Consensus 37 ~d~~t~lLi~~l----~~~~~~~VLDiGcG~G~~~~~la~~~~~v~~iD~s~--~~i~~a~~n~~~~~l~~~~i~~~~~d 110 (194)
T d1dusa_ 37 VDKGTKILVENV----VVDKDDDILDLGCGYGVIGIALADEVKSTTMADINR--RAIKLAKENIKLNNLDNYDIRVVHSD 110 (194)
T ss_dssp CCHHHHHHHHHC----CCCTTCEEEEETCTTSHHHHHHGGGSSEEEEEESCH--HHHHHHHHHHHHTTCTTSCEEEEECS
T ss_pred cCHHHHHHHHhC----CcCCCCeEEEEeecCChhHHHHHhhccccceeeecc--ccchhHHHHHHHhCCccceEEEEEcc
Confidence 455666666654 345678999999999999999999999999999995 6999999999998764 4454444
Q ss_pred cCCCCcCcCCCCCcEEEEcCCcCCCcc-HHHHHHHHHHHhhcCCCeEEEEEeeccCchhHHHHHHHH
Q 026274 128 WGFLDASIFDLNPNIILGADVFYDASA-FDDLFATITYLLQSSPGSVFITTYHNRSGHHLIEFLMVK 193 (241)
Q Consensus 128 w~~~~~~~~~~~fDlIl~~dvly~~~~-~~~ll~~~~~lL~~~~~~~~~~~~~~r~~~~~~~~~~~~ 193 (241)
+. ....+.+||+|++++++|+... .+.+++.+.++|+ |+|.+++..............+++
T Consensus 111 ~~---~~~~~~~fD~Ii~~~p~~~~~~~~~~~l~~~~~~Lk--pgG~l~i~~~~~~~~~~~~~~l~~ 172 (194)
T d1dusa_ 111 LY---ENVKDRKYNKIITNPPIRAGKEVLHRIIEEGKELLK--DNGEIWVVIQTKQGAKSLAKYMKD 172 (194)
T ss_dssp TT---TTCTTSCEEEEEECCCSTTCHHHHHHHHHHHHHHEE--EEEEEEEEEESTHHHHHHHHHHHH
T ss_pred hh---hhhccCCceEEEEcccEEecchhhhhHHHHHHHhcC--cCcEEEEEEeCcCCHHHHHHHHHH
Confidence 43 3334568999999998877554 5789999999998 667666554444444444444443
|
| >d2o57a1 c.66.1.18 (A:16-297) Putative sarcosine dimethylglycine methyltransferase {Red algae (Galdieria sulphuraria) [TaxId: 130081]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Mycolic acid cyclopropane synthase domain: Putative sarcosine dimethylglycine methyltransferase species: Red algae (Galdieria sulphuraria) [TaxId: 130081]
Probab=99.69 E-value=4.8e-16 Score=131.35 Aligned_cols=114 Identities=18% Similarity=0.122 Sum_probs=94.2
Q ss_pred HHHHHHhccCCCCCCeEEEecCCCCHHHHHHHHh-CCEEEEEcCCCcHHHHHHHHHHHHHcCC--ceEEEEeecCCCCcC
Q 026274 58 LAEYVWQQRYRFSGANVVELGAGTSLPGLVAAKV-GSNVTLTDDSNRIEVLKNMRRVCEMNKL--NCRVMGLTWGFLDAS 134 (241)
Q Consensus 58 L~~~l~~~~~~~~~~~VLElGcGtGl~sl~la~~-g~~V~~tD~~~~~~~l~~~~~n~~~n~~--~~~~~~l~w~~~~~~ 134 (241)
+++.|.......++.+|||||||+|..+..+++. |++|+++|+++ .+++.+++++...++ ++++...++.+. +
T Consensus 55 ~~~~l~~~~~l~~~~~vLDiGcG~G~~~~~la~~~~~~v~gvD~s~--~~i~~a~~~~~~~gl~~~v~~~~~d~~~l--~ 130 (282)
T d2o57a1 55 LASELAMTGVLQRQAKGLDLGAGYGGAARFLVRKFGVSIDCLNIAP--VQNKRNEEYNNQAGLADNITVKYGSFLEI--P 130 (282)
T ss_dssp HHHHHHHTTCCCTTCEEEEETCTTSHHHHHHHHHHCCEEEEEESCH--HHHHHHHHHHHHHTCTTTEEEEECCTTSC--S
T ss_pred HHHHHHHhcCCCCCCEEEEeCCCCcHHHhhhhccCCcEEEEEeccc--hhhhhhhcccccccccccccccccccccc--c
Confidence 4444444556668899999999999999999885 88999999995 699999999888876 478888888764 3
Q ss_pred cCCCCCcEEEEcCCcCCCccHHHHHHHHHHHhhcCCCeEEEEE
Q 026274 135 IFDLNPNIILGADVFYDASAFDDLFATITYLLQSSPGSVFITT 177 (241)
Q Consensus 135 ~~~~~fDlIl~~dvly~~~~~~~ll~~~~~lL~~~~~~~~~~~ 177 (241)
..+++||+|++.++++|.++...+++.+.++|+ |||.+++.
T Consensus 131 ~~~~sfD~V~~~~~l~h~~d~~~~l~~~~~~Lk--pgG~l~~~ 171 (282)
T d2o57a1 131 CEDNSYDFIWSQDAFLHSPDKLKVFQECARVLK--PRGVMAIT 171 (282)
T ss_dssp SCTTCEEEEEEESCGGGCSCHHHHHHHHHHHEE--EEEEEEEE
T ss_pred ccccccchhhccchhhhccCHHHHHHHHHHhcC--CCcEEEEE
Confidence 445789999999999999999999999999999 56655544
|
| >d1ve3a1 c.66.1.43 (A:2-227) Hypothetical protein PH0226 {Archaeon Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: CAC2371-like domain: Hypothetical protein PH0226 species: Archaeon Pyrococcus horikoshii [TaxId: 53953]
Probab=99.69 E-value=1.6e-16 Score=128.90 Aligned_cols=104 Identities=17% Similarity=0.241 Sum_probs=87.1
Q ss_pred CCCeEEEecCCCCHHHHHHHHhCCEEEEEcCCCcHHHHHHHHHHHHHcCCceEEEEeecCCCCcCcCCCCCcEEEEcCCc
Q 026274 70 SGANVVELGAGTSLPGLVAAKVGSNVTLTDDSNRIEVLKNMRRVCEMNKLNCRVMGLTWGFLDASIFDLNPNIILGADVF 149 (241)
Q Consensus 70 ~~~~VLElGcGtGl~sl~la~~g~~V~~tD~~~~~~~l~~~~~n~~~n~~~~~~~~l~w~~~~~~~~~~~fDlIl~~dvl 149 (241)
++.+|||||||+|..+..+++.|++|+|+|+|+ +|++.+++++...+..+.....+..+. +..+++||+|++.+++
T Consensus 37 ~~~~ILDiGcG~G~~~~~la~~~~~v~giD~S~--~~i~~ak~~~~~~~~~~~~~~~d~~~l--~~~~~~fD~I~~~~~l 112 (226)
T d1ve3a1 37 KRGKVLDLACGVGGFSFLLEDYGFEVVGVDISE--DMIRKAREYAKSRESNVEFIVGDARKL--SFEDKTFDYVIFIDSI 112 (226)
T ss_dssp SCCEEEEETCTTSHHHHHHHHTTCEEEEEESCH--HHHHHHHHHHHHTTCCCEEEECCTTSC--CSCTTCEEEEEEESCG
T ss_pred CCCEEEEECCCcchhhhhHhhhhcccccccccc--cchhhhhhhhccccccccccccccccc--cccCcCceEEEEecch
Confidence 567899999999999999999999999999995 799999998887777777766666553 3445789999999999
Q ss_pred CCCc--cHHHHHHHHHHHhhcCCCeEEEEEee
Q 026274 150 YDAS--AFDDLFATITYLLQSSPGSVFITTYH 179 (241)
Q Consensus 150 y~~~--~~~~ll~~~~~lL~~~~~~~~~~~~~ 179 (241)
+|.+ +...+++.+.++|+ |||.+++...
T Consensus 113 ~~~~~~d~~~~l~~i~~~Lk--pgG~lii~~~ 142 (226)
T d1ve3a1 113 VHFEPLELNQVFKEVRRVLK--PSGKFIMYFT 142 (226)
T ss_dssp GGCCHHHHHHHHHHHHHHEE--EEEEEEEEEE
T ss_pred hhCChhHHHHHHHHHHHHcC--cCcEEEEEEc
Confidence 9865 67789999999999 6676666543
|
| >d1wzna1 c.66.1.43 (A:1-251) Hypothetical methyltransferase PH1305 {Archaeon Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: CAC2371-like domain: Hypothetical methyltransferase PH1305 species: Archaeon Pyrococcus horikoshii [TaxId: 53953]
Probab=99.66 E-value=4.9e-16 Score=128.37 Aligned_cols=107 Identities=23% Similarity=0.288 Sum_probs=88.7
Q ss_pred CCCCCCeEEEecCCCCHHHHHHHHhCCEEEEEcCCCcHHHHHHHHHHHHHcCCceEEEEeecCCCCcCcCCCCCcEEEEc
Q 026274 67 YRFSGANVVELGAGTSLPGLVAAKVGSNVTLTDDSNRIEVLKNMRRVCEMNKLNCRVMGLTWGFLDASIFDLNPNIILGA 146 (241)
Q Consensus 67 ~~~~~~~VLElGcGtGl~sl~la~~g~~V~~tD~~~~~~~l~~~~~n~~~n~~~~~~~~l~w~~~~~~~~~~~fDlIl~~ 146 (241)
...++++|||+|||||..++.+++.|++|+++|+|+ +|++.+++++..++.++.+...++.+.. .+++||+|++.
T Consensus 38 ~~~~~~~iLDiGcGtG~~~~~l~~~~~~v~gvD~s~--~mi~~a~~~~~~~~~~i~~~~~d~~~l~---~~~~fD~I~~~ 112 (251)
T d1wzna1 38 AKREVRRVLDLACGTGIPTLELAERGYEVVGLDLHE--EMLRVARRKAKERNLKIEFLQGDVLEIA---FKNEFDAVTMF 112 (251)
T ss_dssp CSSCCCEEEEETCTTCHHHHHHHHTTCEEEEEESCH--HHHHHHHHHHHHTTCCCEEEESCGGGCC---CCSCEEEEEEC
T ss_pred cCCCCCEEEEeCCCCCccchhhcccceEEEEEeecc--ccccccccccccccccchheehhhhhcc---cccccchHhhh
Confidence 334667999999999999999999999999999995 7999999999999989988888877653 23589999986
Q ss_pred -CCcCCC--ccHHHHHHHHHHHhhcCCCeEEEEEeec
Q 026274 147 -DVFYDA--SAFDDLFATITYLLQSSPGSVFITTYHN 180 (241)
Q Consensus 147 -dvly~~--~~~~~ll~~~~~lL~~~~~~~~~~~~~~ 180 (241)
.++++. ++...+++.+.++|+ |||++++....
T Consensus 113 ~~~~~~~~~~~~~~~L~~~~~~Lk--pgG~lii~~~~ 147 (251)
T d1wzna1 113 FSTIMYFDEEDLRKLFSKVAEALK--PGGVFITDFPC 147 (251)
T ss_dssp SSGGGGSCHHHHHHHHHHHHHHEE--EEEEEEEEEEC
T ss_pred hhhhhcCChHHHHHHHHHHHHHcC--CCcEEEEEecc
Confidence 566654 456789999999999 67888776543
|
| >d1nkva_ c.66.1.21 (A:) Hypothetical Protein YjhP {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Hypothetical Protein YjhP domain: Hypothetical Protein YjhP species: Escherichia coli [TaxId: 562]
Probab=99.66 E-value=3.8e-16 Score=129.29 Aligned_cols=119 Identities=14% Similarity=0.084 Sum_probs=100.6
Q ss_pred eccHHHHHHHHHhccCCCCCCeEEEecCCCCHHHHHHHHh-CCEEEEEcCCCcHHHHHHHHHHHHHcCCc--eEEEEeec
Q 026274 52 WPCSVILAEYVWQQRYRFSGANVVELGAGTSLPGLVAAKV-GSNVTLTDDSNRIEVLKNMRRVCEMNKLN--CRVMGLTW 128 (241)
Q Consensus 52 W~~s~~L~~~l~~~~~~~~~~~VLElGcGtGl~sl~la~~-g~~V~~tD~~~~~~~l~~~~~n~~~n~~~--~~~~~l~w 128 (241)
+|.+.-..+.|.......+|.+|||||||+|..+..+++. |++|+++|+|+ .|++.+++++..+++. +++...++
T Consensus 15 ~p~~~~~~~~l~~~~~l~pg~~VLDiGCG~G~~~~~la~~~~~~v~GvD~s~--~~~~~ar~~~~~~gl~~~v~~~~~d~ 92 (245)
T d1nkva_ 15 NPFTEEKYATLGRVLRMKPGTRILDLGSGSGEMLCTWARDHGITGTGIDMSS--LFTAQAKRRAEELGVSERVHFIHNDA 92 (245)
T ss_dssp SSCCHHHHHHHHHHTCCCTTCEEEEETCTTCHHHHHHHHHTCCEEEEEESCH--HHHHHHHHHHHHTTCTTTEEEEESCC
T ss_pred CCCCHHHHHHHHHHcCCCCCCEEEEEcCCCCHHHHHHHHhcCCEEEEEeccc--chhhHHHHHHHHhhccccchhhhhHH
Confidence 5666667777777777778999999999999999998875 78999999995 6999999999988864 78888777
Q ss_pred CCCCcCcCCCCCcEEEEcCCcCCCccHHHHHHHHHHHhhcCCCeEEEEE
Q 026274 129 GFLDASIFDLNPNIILGADVFYDASAFDDLFATITYLLQSSPGSVFITT 177 (241)
Q Consensus 129 ~~~~~~~~~~~fDlIl~~dvly~~~~~~~ll~~~~~lL~~~~~~~~~~~ 177 (241)
.+. ..+.+||+|++..+++|..+.+.+++.+.++|+ |||.+++.
T Consensus 93 ~~~---~~~~~fD~v~~~~~~~~~~d~~~~l~~~~r~Lk--PGG~l~i~ 136 (245)
T d1nkva_ 93 AGY---VANEKCDVAACVGATWIAGGFAGAEELLAQSLK--PGGIMLIG 136 (245)
T ss_dssp TTC---CCSSCEEEEEEESCGGGTSSSHHHHHHHTTSEE--EEEEEEEE
T ss_pred hhc---cccCceeEEEEEehhhccCCHHHHHHHHHHHcC--cCcEEEEE
Confidence 654 245689999999999999999999999999999 66766654
|
| >d2p7ia1 c.66.1.41 (A:22-246) Hypothetical protein ECA1738 {Erwinia carotovora [TaxId: 554]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: UbiE/COQ5-like domain: Hypothetical protein ECA1738 species: Erwinia carotovora [TaxId: 554]
Probab=99.65 E-value=4.2e-16 Score=127.58 Aligned_cols=124 Identities=15% Similarity=0.059 Sum_probs=97.1
Q ss_pred CCCCCeEEEecCCCCHHHHHHHHhCCEEEEEcCCCcHHHHHHHHHHHHHcCCceEEEEeecCCCCcCcCCCCCcEEEEcC
Q 026274 68 RFSGANVVELGAGTSLPGLVAAKVGSNVTLTDDSNRIEVLKNMRRVCEMNKLNCRVMGLTWGFLDASIFDLNPNIILGAD 147 (241)
Q Consensus 68 ~~~~~~VLElGcGtGl~sl~la~~g~~V~~tD~~~~~~~l~~~~~n~~~n~~~~~~~~l~w~~~~~~~~~~~fDlIl~~d 147 (241)
..++++|||||||+|..+..+++.|.+|+++|+|+ ++++.++++.. .++.+...++.+.. .+++||+|++.+
T Consensus 18 ~~~~~~VLDiGcG~G~~~~~l~~~g~~v~giD~s~--~~i~~a~~~~~---~~~~~~~~~~~~~~---~~~~fD~I~~~~ 89 (225)
T d2p7ia1 18 FFRPGNLLELGSFKGDFTSRLQEHFNDITCVEASE--EAISHAQGRLK---DGITYIHSRFEDAQ---LPRRYDNIVLTH 89 (225)
T ss_dssp GCCSSCEEEESCTTSHHHHHHTTTCSCEEEEESCH--HHHHHHHHHSC---SCEEEEESCGGGCC---CSSCEEEEEEES
T ss_pred hCCCCcEEEEeCCCcHHHHHHHHcCCeEEEEeCcH--HHhhhhhcccc---cccccccccccccc---cccccccccccc
Confidence 45788999999999999999999999999999995 69998887643 24666666665432 356899999999
Q ss_pred CcCCCccHHHHHHHHH-HHhhcCCCeEEEEEeec--------------------------------cCchhHHHHHHHHc
Q 026274 148 VFYDASAFDDLFATIT-YLLQSSPGSVFITTYHN--------------------------------RSGHHLIEFLMVKW 194 (241)
Q Consensus 148 vly~~~~~~~ll~~~~-~lL~~~~~~~~~~~~~~--------------------------------r~~~~~~~~~~~~~ 194 (241)
+++|.++...+++.+. ++|+ |||.+++..+. +.+...+..++++.
T Consensus 90 vleh~~d~~~~l~~i~~~~Lk--~gG~l~i~~pn~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~l~~~l~~~ 167 (225)
T d2p7ia1 90 VLEHIDDPVALLKRINDDWLA--EGGRLFLVCPNANAVSRQIAVKMGIISHNSAVTEAEFAHGHRCTYALDTLERDASRA 167 (225)
T ss_dssp CGGGCSSHHHHHHHHHHTTEE--EEEEEEEEEECTTCHHHHHHHHTTSSSSTTCCCHHHHHTTCCCCCCHHHHHHHHHHT
T ss_pred eeEecCCHHHHHHHHHHHhcC--CCceEEEEeCCcccHHHHHHHHhhhhhhhhhcCccccceeeeeccCHHHHHHHHHHC
Confidence 9999999999999987 7888 66776665432 22234566678899
Q ss_pred CCEEEEE
Q 026274 195 GLKCVKL 201 (241)
Q Consensus 195 g~~~~~i 201 (241)
||++...
T Consensus 168 Gf~i~~~ 174 (225)
T d2p7ia1 168 GLQVTYR 174 (225)
T ss_dssp TCEEEEE
T ss_pred CCEEEEE
Confidence 9988775
|
| >d2ex4a1 c.66.1.42 (A:2-224) Adrenal gland protein AD-003 (C9orf32) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: AD-003 protein-like domain: Adrenal gland protein AD-003 (C9orf32) species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.64 E-value=1.5e-15 Score=123.86 Aligned_cols=132 Identities=9% Similarity=0.002 Sum_probs=98.0
Q ss_pred CCCCCCeEEEecCCCCHHHHHHHHh-CCEEEEEcCCCcHHHHHHHHHHHHHcCC-ceEEEEeecCCCCcCcCCCCCcEEE
Q 026274 67 YRFSGANVVELGAGTSLPGLVAAKV-GSNVTLTDDSNRIEVLKNMRRVCEMNKL-NCRVMGLTWGFLDASIFDLNPNIIL 144 (241)
Q Consensus 67 ~~~~~~~VLElGcGtGl~sl~la~~-g~~V~~tD~~~~~~~l~~~~~n~~~n~~-~~~~~~l~w~~~~~~~~~~~fDlIl 144 (241)
....+.+|||||||+|..+..+++. +.+|+++|+|+ +|++.+++++...+. ++++...+..+.. ..+.+||+|+
T Consensus 57 ~~~~~~~vLDiGcG~G~~~~~l~~~~~~~v~~vD~s~--~~l~~ak~~~~~~~~~~~~f~~~d~~~~~--~~~~~fD~I~ 132 (222)
T d2ex4a1 57 NKTGTSCALDCGAGIGRITKRLLLPLFREVDMVDITE--DFLVQAKTYLGEEGKRVRNYFCCGLQDFT--PEPDSYDVIW 132 (222)
T ss_dssp -CCCCSEEEEETCTTTHHHHHTTTTTCSEEEEEESCH--HHHHHHHHHTGGGGGGEEEEEECCGGGCC--CCSSCEEEEE
T ss_pred CCCCCCEEEEeccCCCHhhHHHHHhcCCEEEEeecCH--HHhhccccccccccccccccccccccccc--cccccccccc
Confidence 3445678999999999999887654 55899999995 799999998877654 4577777776643 2356899999
Q ss_pred EcCCcCCCccH--HHHHHHHHHHhhcCCCeEEEEEeec-c-------------CchhHHHHHHHHcCCEEEEEecC
Q 026274 145 GADVFYDASAF--DDLFATITYLLQSSPGSVFITTYHN-R-------------SGHHLIEFLMVKWGLKCVKLVDG 204 (241)
Q Consensus 145 ~~dvly~~~~~--~~ll~~~~~lL~~~~~~~~~~~~~~-r-------------~~~~~~~~~~~~~g~~~~~i~~~ 204 (241)
+..+++|.++. ..+++.++++|+ |+|.+++.... . .+...+..++++.||++......
T Consensus 133 ~~~~l~h~~~~~~~~~l~~i~~~Lk--~~G~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~aGf~ii~~~~q 206 (222)
T d2ex4a1 133 IQWVIGHLTDQHLAEFLRRCKGSLR--PNGIIVIKDNMAQEGVILDDVDSSVCRDLDVVRRIICSAGLSLLAEERQ 206 (222)
T ss_dssp EESCGGGSCHHHHHHHHHHHHHHEE--EEEEEEEEEEEBSSSEEEETTTTEEEEBHHHHHHHHHHTTCCEEEEEEC
T ss_pred cccccccchhhhhhhHHHHHHHhcC--CcceEEEEEcccccccccccCCceeeCCHHHHHHHHHHcCCEEEEEEEe
Confidence 99999997654 579999999998 55655544111 1 12344566788999998877443
|
| >d2avna1 c.66.1.41 (A:1-246) Hypothetical methyltransferase TM1389 {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: UbiE/COQ5-like domain: Hypothetical methyltransferase TM1389 species: Thermotoga maritima [TaxId: 2336]
Probab=99.60 E-value=1.7e-15 Score=124.16 Aligned_cols=100 Identities=27% Similarity=0.312 Sum_probs=80.0
Q ss_pred CCCeEEEecCCCCHHHHHHHHhCCEEEEEcCCCcHHHHHHHHHHHHHcCCceEEEEeecCCCCcCcCCCCCcEEEE-cCC
Q 026274 70 SGANVVELGAGTSLPGLVAAKVGSNVTLTDDSNRIEVLKNMRRVCEMNKLNCRVMGLTWGFLDASIFDLNPNIILG-ADV 148 (241)
Q Consensus 70 ~~~~VLElGcGtGl~sl~la~~g~~V~~tD~~~~~~~l~~~~~n~~~n~~~~~~~~l~w~~~~~~~~~~~fDlIl~-~dv 148 (241)
++.+|||+|||+|..+..+++.|++|+|+|+|+ +|++.++++. .. .+...+..+. +..+++||+|++ .++
T Consensus 42 ~~~~vLDiGcG~G~~~~~l~~~~~~v~giD~s~--~~l~~a~~~~----~~-~~~~~~~~~l--~~~~~~fD~ii~~~~~ 112 (246)
T d2avna1 42 NPCRVLDLGGGTGKWSLFLQERGFEVVLVDPSK--EMLEVAREKG----VK-NVVEAKAEDL--PFPSGAFEAVLALGDV 112 (246)
T ss_dssp SCCEEEEETCTTCHHHHHHHTTTCEEEEEESCH--HHHHHHHHHT----CS-CEEECCTTSC--CSCTTCEEEEEECSSH
T ss_pred CCCEEEEECCCCchhcccccccceEEEEeeccc--cccccccccc----cc-cccccccccc--ccccccccceeeecch
Confidence 677999999999999999999999999999995 6999888753 22 1334444432 334578999997 578
Q ss_pred cCCCccHHHHHHHHHHHhhcCCCeEEEEEeec
Q 026274 149 FYDASAFDDLFATITYLLQSSPGSVFITTYHN 180 (241)
Q Consensus 149 ly~~~~~~~ll~~~~~lL~~~~~~~~~~~~~~ 180 (241)
++|.++...+++.+.++|+ |||++++....
T Consensus 113 ~~~~~d~~~~l~~i~r~Lk--~gG~~ii~~~~ 142 (246)
T d2avna1 113 LSYVENKDKAFSEIRRVLV--PDGLLIATVDN 142 (246)
T ss_dssp HHHCSCHHHHHHHHHHHEE--EEEEEEEEEEB
T ss_pred hhhhhhHHHHHHHHHhhcC--cCcEEEEEECC
Confidence 8999999999999999999 67888777643
|
| >d1l3ia_ c.66.1.22 (A:) Precorrin-6Y methyltransferase (CbiT) {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Precorrin-6Y methyltransferase (CbiT) domain: Precorrin-6Y methyltransferase (CbiT) species: Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]
Probab=99.59 E-value=4.4e-15 Score=118.22 Aligned_cols=125 Identities=16% Similarity=0.020 Sum_probs=92.9
Q ss_pred cCCCCCCeEEEecCCCCHHHHHHHHhCCEEEEEcCCCcHHHHHHHHHHHHHcCC--ceEEEEeecCCCCcCcCCCCCcEE
Q 026274 66 RYRFSGANVVELGAGTSLPGLVAAKVGSNVTLTDDSNRIEVLKNMRRVCEMNKL--NCRVMGLTWGFLDASIFDLNPNII 143 (241)
Q Consensus 66 ~~~~~~~~VLElGcGtGl~sl~la~~g~~V~~tD~~~~~~~l~~~~~n~~~n~~--~~~~~~l~w~~~~~~~~~~~fDlI 143 (241)
....++.+|||+|||+|..++.+|+.+++|+++|+++ ++++.+++|++.+++ ++++...+..+.. .....||+|
T Consensus 29 l~~~~g~~VLDiGcGsG~~s~~lA~~~~~V~avD~~~--~~l~~a~~n~~~~gl~~~v~~~~gda~~~~--~~~~~~D~v 104 (186)
T d1l3ia_ 29 AEPGKNDVAVDVGCGTGGVTLELAGRVRRVYAIDRNP--EAISTTEMNLQRHGLGDNVTLMEGDAPEAL--CKIPDIDIA 104 (186)
T ss_dssp HCCCTTCEEEEESCTTSHHHHHHHTTSSEEEEEESCH--HHHHHHHHHHHHTTCCTTEEEEESCHHHHH--TTSCCEEEE
T ss_pred cCCCCCCEEEEEECCeEcccccccccceEEEEecCCH--HHHHHHHHHHHHcCCCcceEEEECchhhcc--cccCCcCEE
Confidence 3456889999999999999999999888999999995 799999999999987 5677766654332 123589999
Q ss_pred EEcCCcCCCccHHHHHHHHHHHhhcCCCeEEEEEeeccCchhHHHHHHHHcCCEEE
Q 026274 144 LGADVFYDASAFDDLFATITYLLQSSPGSVFITTYHNRSGHHLIEFLMVKWGLKCV 199 (241)
Q Consensus 144 l~~dvly~~~~~~~ll~~~~~lL~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~ 199 (241)
++..... ....+++.+.+.|+ |+|.+++..............++.+|+...
T Consensus 105 ~~~~~~~---~~~~~~~~~~~~Lk--pgG~lvi~~~~~e~~~~~~~~l~~~~~~~~ 155 (186)
T d1l3ia_ 105 VVGGSGG---ELQEILRIIKDKLK--PGGRIIVTAILLETKFEAMECLRDLGFDVN 155 (186)
T ss_dssp EESCCTT---CHHHHHHHHHHTEE--EEEEEEEEECBHHHHHHHHHHHHHTTCCCE
T ss_pred EEeCccc---cchHHHHHHHHHhC--cCCEEEEEeeccccHHHHHHHHHHcCCCeE
Confidence 9887654 46788999999998 566666554433333333444566676443
|
| >d1y8ca_ c.66.1.43 (A:) Putative methyltransferase CAC2371 {Clostridium acetobutylicum [TaxId: 1488]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: CAC2371-like domain: Putative methyltransferase CAC2371 species: Clostridium acetobutylicum [TaxId: 1488]
Probab=99.58 E-value=2.6e-15 Score=124.04 Aligned_cols=102 Identities=19% Similarity=0.157 Sum_probs=84.9
Q ss_pred CCCCeEEEecCCCCHHHHHHHHhCCEEEEEcCCCcHHHHHHHHHHHHHcCCceEEEEeecCCCCcCcCCCCCcEEEEc-C
Q 026274 69 FSGANVVELGAGTSLPGLVAAKVGSNVTLTDDSNRIEVLKNMRRVCEMNKLNCRVMGLTWGFLDASIFDLNPNIILGA-D 147 (241)
Q Consensus 69 ~~~~~VLElGcGtGl~sl~la~~g~~V~~tD~~~~~~~l~~~~~n~~~n~~~~~~~~l~w~~~~~~~~~~~fDlIl~~-d 147 (241)
.++++|||+|||+|..++.+++.|.+|+|+|.|+ +|++.+++++..++.++++...|+.+.. .+++||+|++. .
T Consensus 36 ~~~~~vLDiGCG~G~~~~~l~~~g~~v~GvD~S~--~ml~~A~~~~~~~~~~v~~~~~d~~~~~---~~~~fD~i~~~~~ 110 (246)
T d1y8ca_ 36 LVFDDYLDLACGTGNLTENLCPKFKNTWAVDLSQ--EMLSEAENKFRSQGLKPRLACQDISNLN---INRKFDLITCCLD 110 (246)
T ss_dssp CCTTEEEEETCTTSTTHHHHGGGSSEEEEECSCH--HHHHHHHHHHHHTTCCCEEECCCGGGCC---CSCCEEEEEECTT
T ss_pred CCCCeEEEEeCcCCHHHHHHHHhCCccEeeccch--hhhhhccccccccCccceeeccchhhhc---ccccccccceeee
Confidence 4567999999999999999999999999999995 7999999999988989988888776643 24589999875 6
Q ss_pred CcCCC---ccHHHHHHHHHHHhhcCCCeEEEEE
Q 026274 148 VFYDA---SAFDDLFATITYLLQSSPGSVFITT 177 (241)
Q Consensus 148 vly~~---~~~~~ll~~~~~lL~~~~~~~~~~~ 177 (241)
++++. .+...+++.+.++|+ |||.+++.
T Consensus 111 ~~~~~~~~~~~~~~l~~~~~~Lk--pgG~~i~~ 141 (246)
T d1y8ca_ 111 STNYIIDSDDLKKYFKAVSNHLK--EGGVFIFD 141 (246)
T ss_dssp GGGGCCSHHHHHHHHHHHHTTEE--EEEEEEEE
T ss_pred eeeccCCHHHHHHHHHHHHHhCC--CCeEEEEE
Confidence 66554 466778999999998 66777754
|
| >d1wy7a1 c.66.1.32 (A:4-204) Hypothetical protein PH1948 {Archaeon Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Ta1320-like domain: Hypothetical protein PH1948 species: Archaeon Pyrococcus horikoshii [TaxId: 53953]
Probab=99.58 E-value=4.4e-14 Score=113.89 Aligned_cols=150 Identities=13% Similarity=0.094 Sum_probs=95.1
Q ss_pred cCCCCCCeEEEecCCCCHHHHHHHHhCC-EEEEEcCCCcHHHHHHHHHHHHHcCCceEEEEeecCCCCcCcCCCCCcEEE
Q 026274 66 RYRFSGANVVELGAGTSLPGLVAAKVGS-NVTLTDDSNRIEVLKNMRRVCEMNKLNCRVMGLTWGFLDASIFDLNPNIIL 144 (241)
Q Consensus 66 ~~~~~~~~VLElGcGtGl~sl~la~~g~-~V~~tD~~~~~~~l~~~~~n~~~n~~~~~~~~l~w~~~~~~~~~~~fDlIl 144 (241)
....+|++|||+|||||.+++.+++.|+ +|+++|+++ .+++.+++|++.++.+..+...+... ...+||+|+
T Consensus 42 ~~dl~g~~vLDlg~GtG~l~i~a~~~g~~~v~~vdi~~--~~~~~a~~N~~~~~~~~~~~~~d~~~-----~~~~fD~Vi 114 (201)
T d1wy7a1 42 LGDIEGKVVADLGAGTGVLSYGALLLGAKEVICVEVDK--EAVDVLIENLGEFKGKFKVFIGDVSE-----FNSRVDIVI 114 (201)
T ss_dssp TTSSTTCEEEEETCTTCHHHHHHHHTTCSEEEEEESCH--HHHHHHHHHTGGGTTSEEEEESCGGG-----CCCCCSEEE
T ss_pred cCCCCCCEEEECcCcchHHHHHHHHcCCCEEEEEcCcH--HHHHHHHHHHHHcCCCceEEECchhh-----hCCcCcEEE
Confidence 4567899999999999999999999987 899999995 79999999999999888877655433 345899999
Q ss_pred EcCCcCCCcc--HHHHHHHHHHHhhcCCCeEEEEEeecc-CchhHHHHHHHHcCCEEEEE-ecCCCCCCcccccccCC--
Q 026274 145 GADVFYDASA--FDDLFATITYLLQSSPGSVFITTYHNR-SGHHLIEFLMVKWGLKCVKL-VDGFSFLPHYKARELNG-- 218 (241)
Q Consensus 145 ~~dvly~~~~--~~~ll~~~~~lL~~~~~~~~~~~~~~r-~~~~~~~~~~~~~g~~~~~i-~~~~~~~p~~~~~~~~~-- 218 (241)
++.++..... ..+++.. .+.. ...++..+... .....++.+...+|+.+... ...|...+.+..+..+.
T Consensus 115 ~nPP~~~~~~~~d~~~l~~---~~~~--~~~v~~ih~~~~~~~~~i~~~~~~~g~~i~~~~~~~f~lp~~y~~H~~k~~~ 189 (201)
T d1wy7a1 115 MNPPFGSQRKHADRPFLLK---AFEI--SDVVYSIHLAKPEVRRFIEKFSWEHGFVVTHRLTTKIEIPLQFFFHRKKLER 189 (201)
T ss_dssp ECCCCSSSSTTTTHHHHHH---HHHH--CSEEEEEEECCHHHHHHHHHHHHHTTEEEEEEEEEEEEEC-----CCCCCEE
T ss_pred EcCccccccccccHHHHHH---HHhh--cccchhcccchHHHHHHHHHHHhhcCceEEEEEEecccccccccccccccce
Confidence 8877644322 2233333 2322 22333333222 22334555678889888765 23344333333222222
Q ss_pred -CeEEEEEEe
Q 026274 219 -NIQLAEIVL 227 (241)
Q Consensus 219 -~~~l~~i~~ 227 (241)
.+.++++.|
T Consensus 190 i~v~~~Rf~k 199 (201)
T d1wy7a1 190 ITVDIYRFSK 199 (201)
T ss_dssp EEEEEEEEEE
T ss_pred EEEEEEEEEE
Confidence 244555554
|
| >d2bzga1 c.66.1.36 (A:17-245) Thiopurine S-methyltransferase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Thiopurine S-methyltransferase domain: Thiopurine S-methyltransferase species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.56 E-value=5e-14 Score=115.34 Aligned_cols=119 Identities=13% Similarity=-0.066 Sum_probs=89.6
Q ss_pred cHHHHHHHHHhccCCCCCCeEEEecCCCCHHHHHHHHhCCEEEEEcCCCcHHHHHHHHHHHHHc----------------
Q 026274 54 CSVILAEYVWQQRYRFSGANVVELGAGTSLPGLVAAKVGSNVTLTDDSNRIEVLKNMRRVCEMN---------------- 117 (241)
Q Consensus 54 ~s~~L~~~l~~~~~~~~~~~VLElGcGtGl~sl~la~~g~~V~~tD~~~~~~~l~~~~~n~~~n---------------- 117 (241)
....|.+++.+.....++.+|||+|||+|..++.+|+.|++|+++|+|+ ++++.++++....
T Consensus 29 ~~~~l~~~~~~~l~~~~~~rvLd~GCG~G~~a~~LA~~G~~V~gvD~S~--~ai~~a~~~~~~~~~~~~~~~~~~~~~~~ 106 (229)
T d2bzga1 29 GHQLLKKHLDTFLKGKSGLRVFFPLCGKAVEMKWFADRGHSVVGVEISE--LGIQEFFTEQNLSYSEEPITEIPGTKVFK 106 (229)
T ss_dssp CCHHHHHHHHHHHTTCCSCEEEETTCTTCTHHHHHHHTTCEEEEECSCH--HHHHHHHHHTTCCEEEEECTTSTTCEEEE
T ss_pred CCHHHHHHHHHhcCCCCCCEEEEeCCCCcHHHHHHHhCCCcEEEEeCCH--HHHHHHHHHhhccccccchhcccccceee
Confidence 4566777776655556788999999999999999999999999999995 6998888765432
Q ss_pred --CCceEEEEeecCCCCcCcCCCCCcEEEEcCCcCCC--ccHHHHHHHHHHHhhcCCCeEEEEE
Q 026274 118 --KLNCRVMGLTWGFLDASIFDLNPNIILGADVFYDA--SAFDDLFATITYLLQSSPGSVFITT 177 (241)
Q Consensus 118 --~~~~~~~~l~w~~~~~~~~~~~fDlIl~~dvly~~--~~~~~ll~~~~~lL~~~~~~~~~~~ 177 (241)
+.++++...|+.+.. ......||+|+...++++. +..+..++.+.++|+ |||.+++.
T Consensus 107 ~~~~~v~~~~~d~~~l~-~~~~~~fd~i~~~~~l~~~~~~~r~~~~~~~~~~Lk--pgG~~~l~ 167 (229)
T d2bzga1 107 SSSGNISLYCCSIFDLP-RTNIGKFDMIWDRGALVAINPGDRKCYADTMFSLLG--KKFQYLLC 167 (229)
T ss_dssp ETTSSEEEEESCGGGGG-GSCCCCEEEEEESSSTTTSCGGGHHHHHHHHHHTEE--EEEEEEEE
T ss_pred ecCCcEEEEEcchhhcc-ccccCceeEEEEEEEEEeccchhhHHHHHHHHhhcC--CcceEEEE
Confidence 124555555554332 2234589999999999874 677899999999999 56654444
|
| >d2i6ga1 c.66.1.44 (A:1-198) Putative methyltransferase TehB {Salmonella typhimurium [TaxId: 90371]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: TehB-like domain: Putative methyltransferase TehB species: Salmonella typhimurium [TaxId: 90371]
Probab=99.56 E-value=1.6e-14 Score=115.68 Aligned_cols=102 Identities=22% Similarity=0.277 Sum_probs=82.9
Q ss_pred CCCCeEEEecCCCCHHHHHHHHhCCEEEEEcCCCcHHHHHHHHHHHHHcCCc-eEEEEeecCCCCcCcCCCCCcEEEEcC
Q 026274 69 FSGANVVELGAGTSLPGLVAAKVGSNVTLTDDSNRIEVLKNMRRVCEMNKLN-CRVMGLTWGFLDASIFDLNPNIILGAD 147 (241)
Q Consensus 69 ~~~~~VLElGcGtGl~sl~la~~g~~V~~tD~~~~~~~l~~~~~n~~~n~~~-~~~~~l~w~~~~~~~~~~~fDlIl~~d 147 (241)
.++.+|||||||+|..++.+++.|++|+++|+++ .|++.+++++...++. +.+...++.+. ..+++||+|++..
T Consensus 29 ~~~grvLDiGcG~G~~~~~la~~g~~v~gvD~s~--~~l~~a~~~~~~~~~~~~~~~~~d~~~~---~~~~~fD~I~~~~ 103 (198)
T d2i6ga1 29 VAPGRTLDLGCGNGRNSLYLAANGYDVTAWDKNP--ASMANLERIKAAEGLDNLQTDLVDLNTL---TFDGEYDFILSTV 103 (198)
T ss_dssp SCSCEEEEETCTTSHHHHHHHHTTCEEEEEESCH--HHHHHHHHHHHHTTCTTEEEEECCTTTC---CCCCCEEEEEEES
T ss_pred CCCCcEEEECCCCCHHHHHHHHHhhhhccccCcH--HHHHHHHHHhhhccccchhhhheecccc---cccccccEEEEee
Confidence 4556999999999999999999999999999995 6999999998888764 56665555543 2356899999999
Q ss_pred CcCCC--ccHHHHHHHHHHHhhcCCCeEEEEE
Q 026274 148 VFYDA--SAFDDLFATITYLLQSSPGSVFITT 177 (241)
Q Consensus 148 vly~~--~~~~~ll~~~~~lL~~~~~~~~~~~ 177 (241)
++++. +....+++.+.++|+ ++|.+++.
T Consensus 104 ~~~~~~~~~~~~~l~~~~~~L~--pgG~~~~~ 133 (198)
T d2i6ga1 104 VMMFLEAQTIPGLIANMQRCTK--PGGYNLIV 133 (198)
T ss_dssp CGGGSCTTHHHHHHHHHHHTEE--EEEEEEEE
T ss_pred eeecCCHHHHHHHHHHHHHHcC--CCcEEEEE
Confidence 99985 456789999999998 55655443
|
| >d2gh1a1 c.66.1.49 (A:13-293) Methyltransferase BC2162 {Bacillus cereus [TaxId: 1396]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: BC2162-like domain: Methyltransferase BC2162 species: Bacillus cereus [TaxId: 1396]
Probab=99.56 E-value=1.4e-14 Score=122.51 Aligned_cols=111 Identities=14% Similarity=0.213 Sum_probs=91.0
Q ss_pred HHHHHhcc-CCCCCCeEEEecCCCCHHHHHHHHh---CCEEEEEcCCCcHHHHHHHHHHHHHcCCceEEEEeecCCCCcC
Q 026274 59 AEYVWQQR-YRFSGANVVELGAGTSLPGLVAAKV---GSNVTLTDDSNRIEVLKNMRRVCEMNKLNCRVMGLTWGFLDAS 134 (241)
Q Consensus 59 ~~~l~~~~-~~~~~~~VLElGcGtGl~sl~la~~---g~~V~~tD~~~~~~~l~~~~~n~~~n~~~~~~~~l~w~~~~~~ 134 (241)
.+|+.... ...++.+|||+|||+|..+..+++. +++|+++|+++ .+++.+++++...+.++++...|..+..
T Consensus 15 l~~l~~~~~~~~~~~~ILDiGcG~G~~~~~la~~~~~~~~v~giD~s~--~~l~~a~~~~~~~~~~~~f~~~d~~~~~-- 90 (281)
T d2gh1a1 15 VSFLVNTVWKITKPVHIVDYGCGYGYLGLVLMPLLPEGSKYTGIDSGE--TLLAEARELFRLLPYDSEFLEGDATEIE-- 90 (281)
T ss_dssp HHHHHHTTSCCCSCCEEEEETCTTTHHHHHHTTTSCTTCEEEEEECCH--HHHHHHHHHHHSSSSEEEEEESCTTTCC--
T ss_pred HHHHHHHHhccCCcCEEEEecCcCCHHHHHHHHhCCCCCEEEEEecch--hHhhhhhccccccccccccccccccccc--
Confidence 35554432 4457789999999999999999985 56899999995 6999999999988888888877766542
Q ss_pred cCCCCCcEEEEcCCcCCCccHHHHHHHHHHHhhcCCCeEEEE
Q 026274 135 IFDLNPNIILGADVFYDASAFDDLFATITYLLQSSPGSVFIT 176 (241)
Q Consensus 135 ~~~~~fDlIl~~dvly~~~~~~~ll~~~~~lL~~~~~~~~~~ 176 (241)
.+++||+|++..+++|.++...+++.+.++|+ |||.+++
T Consensus 91 -~~~~fD~v~~~~~l~~~~d~~~~l~~~~~~Lk--pgG~lii 129 (281)
T d2gh1a1 91 -LNDKYDIAICHAFLLHMTTPETMLQKMIHSVK--KGGKIIC 129 (281)
T ss_dssp -CSSCEEEEEEESCGGGCSSHHHHHHHHHHTEE--EEEEEEE
T ss_pred -ccCCceEEEEehhhhcCCCHHHHHHHHHHHcC--cCcEEEE
Confidence 24589999999999999999999999999999 5665554
|
| >d2b3ta1 c.66.1.30 (A:2-275) N5-glutamine methyltransferase, HemK {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: N5-glutamine methyltransferase, HemK domain: N5-glutamine methyltransferase, HemK species: Escherichia coli [TaxId: 562]
Probab=99.55 E-value=2.1e-14 Score=120.93 Aligned_cols=140 Identities=14% Similarity=0.188 Sum_probs=104.4
Q ss_pred ccHHHHHHHHHhccCCCCCCeEEEecCCCCHHHHHHHHhC--CEEEEEcCCCcHHHHHHHHHHHHHcCC-ceEEEEeecC
Q 026274 53 PCSVILAEYVWQQRYRFSGANVVELGAGTSLPGLVAAKVG--SNVTLTDDSNRIEVLKNMRRVCEMNKL-NCRVMGLTWG 129 (241)
Q Consensus 53 ~~s~~L~~~l~~~~~~~~~~~VLElGcGtGl~sl~la~~g--~~V~~tD~~~~~~~l~~~~~n~~~n~~-~~~~~~l~w~ 129 (241)
|.+..|.++...... .++.+|||||||+|.+++.+++.. ++|+++|+|+ .+++.+++|++.+++ ++.+...||.
T Consensus 92 peTE~lv~~~l~~~~-~~~~~vlDlGtGSG~I~i~la~~~p~~~v~avDis~--~Al~~A~~Na~~~~~~~v~~~~~d~~ 168 (274)
T d2b3ta1 92 PDTECLVEQALARLP-EQPCRILDLGTGTGAIALALASERPDCEIIAVDRMP--DAVSLAQRNAQHLAIKNIHILQSDWF 168 (274)
T ss_dssp TTHHHHHHHHHHHSC-SSCCEEEEETCTTSHHHHHHHHHCTTSEEEEECSSH--HHHHHHHHHHHHHTCCSEEEECCSTT
T ss_pred cchhhhhhhHhhhhc-ccccceeeeehhhhHHHHHHHhhCCcceeeeccchh--HHHhHHHHHHHHhCcccceeeecccc
Confidence 456666676655322 356789999999999999999863 4999999995 799999999999998 4888887776
Q ss_pred CCCcCcCCCCCcEEEEcCCcCCCc-------------------------cHHHHHHHHHHHhhcCCCeEEEEEeeccCch
Q 026274 130 FLDASIFDLNPNIILGADVFYDAS-------------------------AFDDLFATITYLLQSSPGSVFITTYHNRSGH 184 (241)
Q Consensus 130 ~~~~~~~~~~fDlIl~~dvly~~~-------------------------~~~~ll~~~~~lL~~~~~~~~~~~~~~r~~~ 184 (241)
+ +..+.+||+|+++++..... .+..+++...++|+ ++|.+++.+...+.
T Consensus 169 ~---~~~~~~fDlIvsNPPYi~~~~~~~~~~v~~~eP~~AL~~g~dGl~~~~~i~~~a~~~L~--~~G~l~lEig~~q~- 242 (274)
T d2b3ta1 169 S---ALAGQQFAMIVSNPPYIDEQDPHLQQGDVRFEPLTALVAADSGMADIVHIIEQSRNALV--SGGFLLLEHGWQQG- 242 (274)
T ss_dssp G---GGTTCCEEEEEECCCCBCTTCHHHHSSGGGSSCSTTTBCHHHHTHHHHHHHHHHGGGEE--EEEEEEEECCSSCH-
T ss_pred c---ccCCCceeEEEecchhhhhhhhcccccccccchhhhcccccccchHHHHHHHHHHHhcC--CCCEEEEEECchHH-
Confidence 4 33456899999998865422 34567788888887 67888887655443
Q ss_pred hHHHHHHHHcCCEEEEE
Q 026274 185 HLIEFLMVKWGLKCVKL 201 (241)
Q Consensus 185 ~~~~~~~~~~g~~~~~i 201 (241)
.....++++.||....+
T Consensus 243 ~~v~~~l~~~gf~~i~~ 259 (274)
T d2b3ta1 243 EAVRQAFILAGYHDVET 259 (274)
T ss_dssp HHHHHHHHHTTCTTCCE
T ss_pred HHHHHHHHHCCCCeEEE
Confidence 44566677889864433
|
| >d1xtpa_ c.66.1.42 (A:) Hypothetical protein Lmaj004091aaa (LmjF30.0810) {Leishmania major [TaxId: 5664]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: AD-003 protein-like domain: Hypothetical protein Lmaj004091aaa (LmjF30.0810) species: Leishmania major [TaxId: 5664]
Probab=99.54 E-value=5.7e-14 Score=117.09 Aligned_cols=129 Identities=12% Similarity=0.033 Sum_probs=93.8
Q ss_pred CCCCCeEEEecCCCCHHHHHHHHh-CCEEEEEcCCCcHHHHHHHHHHHHHcCCceEEEEeecCCCCcCcCCCCCcEEEEc
Q 026274 68 RFSGANVVELGAGTSLPGLVAAKV-GSNVTLTDDSNRIEVLKNMRRVCEMNKLNCRVMGLTWGFLDASIFDLNPNIILGA 146 (241)
Q Consensus 68 ~~~~~~VLElGcGtGl~sl~la~~-g~~V~~tD~~~~~~~l~~~~~n~~~n~~~~~~~~l~w~~~~~~~~~~~fDlIl~~ 146 (241)
..++.+|||+|||+|.++..++.. +.+|+++|.++ +|++.++++... ...+++...+..+.. ..+.+||+|++.
T Consensus 91 ~~~~~~vLD~GcG~G~~t~~ll~~~~~~v~~vD~s~--~~l~~a~~~~~~-~~~~~~~~~d~~~~~--~~~~~fD~I~~~ 165 (254)
T d1xtpa_ 91 GHGTSRALDCGAGIGRITKNLLTKLYATTDLLEPVK--HMLEEAKRELAG-MPVGKFILASMETAT--LPPNTYDLIVIQ 165 (254)
T ss_dssp TCCCSEEEEETCTTTHHHHHTHHHHCSEEEEEESCH--HHHHHHHHHTTT-SSEEEEEESCGGGCC--CCSSCEEEEEEE
T ss_pred CCCCCeEEEecccCChhhHHHHhhcCceEEEEcCCH--HHHHhhhccccc-cccceeEEccccccc--cCCCccceEEee
Confidence 346779999999999999877654 55899999995 799999887653 234566666665542 235689999999
Q ss_pred CCcCCCcc--HHHHHHHHHHHhhcCCCeEEEEEeecc---------------CchhHHHHHHHHcCCEEEEEec
Q 026274 147 DVFYDASA--FDDLFATITYLLQSSPGSVFITTYHNR---------------SGHHLIEFLMVKWGLKCVKLVD 203 (241)
Q Consensus 147 dvly~~~~--~~~ll~~~~~lL~~~~~~~~~~~~~~r---------------~~~~~~~~~~~~~g~~~~~i~~ 203 (241)
.+++|.++ ...+++.++++|+ ++|.+++..... ++......++++.||++.....
T Consensus 166 ~vl~hl~d~d~~~~l~~~~~~Lk--pgG~iii~e~~~~~~~~~~d~~d~~~~rs~~~~~~l~~~aGf~ii~~~~ 237 (254)
T d1xtpa_ 166 WTAIYLTDADFVKFFKHCQQALT--PNGYIFFKENCSTGDRFLVDKEDSSLTRSDIHYKRLFNESGVRVVKEAF 237 (254)
T ss_dssp SCGGGSCHHHHHHHHHHHHHHEE--EEEEEEEEEEBC--CCEEEETTTTEEEBCHHHHHHHHHHHTCCEEEEEE
T ss_pred ccccccchhhhHHHHHHHHHhcC--CCcEEEEEecCCCCCcceecccCCceeCCHHHHHHHHHHcCCEEEEEEe
Confidence 99999865 4588999999998 566666532111 1233456677899998877633
|
| >d2esra1 c.66.1.46 (A:28-179) Putative methyltransferase SPy1538 {Streptococcus pyogenes [TaxId: 1314]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: YhhF-like domain: Putative methyltransferase SPy1538 species: Streptococcus pyogenes [TaxId: 1314]
Probab=99.52 E-value=1.1e-14 Score=112.44 Aligned_cols=108 Identities=14% Similarity=0.153 Sum_probs=84.2
Q ss_pred CCCCCeEEEecCCCCHHHHHHHHhCC-EEEEEcCCCcHHHHHHHHHHHHHcCCc--eEEEEeecCCCCcCcCCCCCcEEE
Q 026274 68 RFSGANVVELGAGTSLPGLVAAKVGS-NVTLTDDSNRIEVLKNMRRVCEMNKLN--CRVMGLTWGFLDASIFDLNPNIIL 144 (241)
Q Consensus 68 ~~~~~~VLElGcGtGl~sl~la~~g~-~V~~tD~~~~~~~l~~~~~n~~~n~~~--~~~~~l~w~~~~~~~~~~~fDlIl 144 (241)
.++|++|||+|||||.+|+.++++|+ +|+++|.++ ++++.+++|++.++.. +++.+.|+.... +....+||+|+
T Consensus 12 ~~~g~~vlDl~~GtG~~~iea~~rga~~v~~ve~~~--~a~~~~~~n~~~~~~~~~~~ii~~D~~~~l-~~~~~~fDiIf 88 (152)
T d2esra1 12 YFNGGRVLDLFAGSGGLAIEAVSRGMSAAVLVEKNR--KAQAIIQDNIIMTKAENRFTLLKMEAERAI-DCLTGRFDLVF 88 (152)
T ss_dssp CCCSCEEEEETCTTCHHHHHHHHTTCCEEEEECCCH--HHHHHHHHHHHTTTCGGGEEEECSCHHHHH-HHBCSCEEEEE
T ss_pred hCCCCeEEEcCCccCHHHHHHHHhCcceeeeehhch--hhhhhhhhhhhhcccccchhhhcccccccc-cccccccceeE
Confidence 46899999999999999999999998 899999995 7999999999999874 566665554432 22346899999
Q ss_pred EcCCcCCCccHHHHHHHHHH--HhhcCCCeEEEEEeecc
Q 026274 145 GADVFYDASAFDDLFATITY--LLQSSPGSVFITTYHNR 181 (241)
Q Consensus 145 ~~dvly~~~~~~~ll~~~~~--lL~~~~~~~~~~~~~~r 181 (241)
+ |+-|........++.+.. +|+ +++++++.+..+
T Consensus 89 ~-DPPy~~~~~~~~l~~i~~~~~L~--~~g~iiiE~~~~ 124 (152)
T d2esra1 89 L-DPPYAKETIVATIEALAAKNLLS--EQVMVVCETDKT 124 (152)
T ss_dssp E-CCSSHHHHHHHHHHHHHHTTCEE--EEEEEEEEEETT
T ss_pred e-chhhccchHHHHHHHHHHCCCcC--CCeEEEEEeCCC
Confidence 8 666777777777777764 355 678888876543
|
| >d1g6q1_ c.66.1.6 (1:) Arginine methyltransferase, HMT1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Arginine methyltransferase domain: Arginine methyltransferase, HMT1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=99.51 E-value=3.8e-14 Score=122.28 Aligned_cols=107 Identities=20% Similarity=0.252 Sum_probs=83.7
Q ss_pred HHhccCCCCCCeEEEecCCCCHHHHHHHHhCC-EEEEEcCCCcHHHHHHHHHHHHHcCC--ceEEEEeecCCCCcCcCCC
Q 026274 62 VWQQRYRFSGANVVELGAGTSLPGLVAAKVGS-NVTLTDDSNRIEVLKNMRRVCEMNKL--NCRVMGLTWGFLDASIFDL 138 (241)
Q Consensus 62 l~~~~~~~~~~~VLElGcGtGl~sl~la~~g~-~V~~tD~~~~~~~l~~~~~n~~~n~~--~~~~~~l~w~~~~~~~~~~ 138 (241)
|.++...++|++|||||||+|++++++|+.|+ +|+++|.++ +++.+++++..|+. ++.+...+..+. +..+.
T Consensus 30 I~~~~~~~~~~~VLDlGcGtG~ls~~aa~~Ga~~V~avd~s~---~~~~a~~~~~~~~~~~~i~~i~~~~~~l--~~~~~ 104 (328)
T d1g6q1_ 30 IIQNKDLFKDKIVLDVGCGTGILSMFAAKHGAKHVIGVDMSS---IIEMAKELVELNGFSDKITLLRGKLEDV--HLPFP 104 (328)
T ss_dssp HHHHHHHHTTCEEEEETCTTSHHHHHHHHTCCSEEEEEESST---HHHHHHHHHHHTTCTTTEEEEESCTTTS--CCSSS
T ss_pred HHhccccCCcCEEEEeCCCCCHHHHHHHHhCCCEEEEEeCCH---HHHHHHHHHHHhCccccceEEEeehhhc--cCccc
Confidence 44444556899999999999999999999998 899999996 77888998888876 456666665543 33456
Q ss_pred CCcEEEEcCCc---CCCccHHHHHHHHHHHhhcCCCeEEE
Q 026274 139 NPNIILGADVF---YDASAFDDLFATITYLLQSSPGSVFI 175 (241)
Q Consensus 139 ~fDlIl~~dvl---y~~~~~~~ll~~~~~lL~~~~~~~~~ 175 (241)
+||+|++..+. .+....+.++....++|+ |||+++
T Consensus 105 ~~D~i~se~~~~~~~~e~~~~~~~~a~~r~Lk--pgG~ii 142 (328)
T d1g6q1_ 105 KVDIIISEWMGYFLLYESMMDTVLYARDHYLV--EGGLIF 142 (328)
T ss_dssp CEEEEEECCCBTTBSTTCCHHHHHHHHHHHEE--EEEEEE
T ss_pred ceeEEEEEecceeeccchhHHHHHHHHHhccC--CCeEEE
Confidence 89999986554 456788999999999999 556554
|
| >d2a14a1 c.66.1.15 (A:5-261) Indolethylamine N-methyltransferase, INMT {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Arylamine N-methyltransferase domain: Indolethylamine N-methyltransferase, INMT species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.51 E-value=2e-14 Score=118.95 Aligned_cols=130 Identities=18% Similarity=0.221 Sum_probs=92.4
Q ss_pred CCCCCeEEEecCCCCHHHHHHHHhCC-EEEEEcCCCcHHHHHHHHHHHHHcCCceE------------------------
Q 026274 68 RFSGANVVELGAGTSLPGLVAAKVGS-NVTLTDDSNRIEVLKNMRRVCEMNKLNCR------------------------ 122 (241)
Q Consensus 68 ~~~~~~VLElGcGtGl~sl~la~~g~-~V~~tD~~~~~~~l~~~~~n~~~n~~~~~------------------------ 122 (241)
..++++|||||||+|..++.+++.++ +|+++|+|+ .+++.+++++..+.....
T Consensus 49 ~~~g~~vLDlGcG~G~~~~~~~~~~~~~v~giD~S~--~~i~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 126 (257)
T d2a14a1 49 GLQGDTLIDIGSGPTIYQVLAACDSFQDITLSDFTD--RNREELEKWLKKEPGAYDWTPAVKFACELEGNSGRWEEKEEK 126 (257)
T ss_dssp SCCEEEEEESSCTTCCGGGTTGGGTEEEEEEEESCH--HHHHHHHHHHHTCTTCCCCHHHHHHHHHHTTCGGGHHHHHHH
T ss_pred CCCCCEEEEECCCCCHhHHHHhccccCcEEEecCCH--HHHHHHHHHHhhccccchhhhHHHHHHHhccccchHHHHHHH
Confidence 45678999999999999888888776 799999995 699999998876543210
Q ss_pred ----EEE-eec----CCCCcCcCCCCCcEEEEcCCcCCC----ccHHHHHHHHHHHhhcCCCeEEEEEeec---------
Q 026274 123 ----VMG-LTW----GFLDASIFDLNPNIILGADVFYDA----SAFDDLFATITYLLQSSPGSVFITTYHN--------- 180 (241)
Q Consensus 123 ----~~~-l~w----~~~~~~~~~~~fDlIl~~dvly~~----~~~~~ll~~~~~lL~~~~~~~~~~~~~~--------- 180 (241)
+.. ... .....+...++||+|++..++++. ++...+++.+.++|+ |||.+++....
T Consensus 127 ~~~~~~~~~~~~~~~~~~~~~~~~~~fD~i~~~~~l~~~~~~~~~~~~~l~~i~~~Lk--pGG~li~~~~~~~~~~~~~~ 204 (257)
T d2a14a1 127 LRAAVKRVLKCDVHLGNPLAPAVLPLADCVLTLLAMECACCSLDAYRAALCNLASLLK--PGGHLVTTVTLRLPSYMVGK 204 (257)
T ss_dssp HHHHEEEEEECCTTSSSTTTTCCCCCEEEEEEESCHHHHCSSHHHHHHHHHHHHTTEE--EEEEEEEEEESSCCEEEETT
T ss_pred HhhhhhcccccccccccccccccCCcccEEeehhhHHHhcccHHHHHHHHHHHHhccC--CCcEEEEEEecccccceecc
Confidence 111 111 111123345689999999999775 367789999999999 56666554221
Q ss_pred ------cCchhHHHHHHHHcCCEEEEE
Q 026274 181 ------RSGHHLIEFLMVKWGLKCVKL 201 (241)
Q Consensus 181 ------r~~~~~~~~~~~~~g~~~~~i 201 (241)
..+...+..++++.||++..+
T Consensus 205 ~~~~~~~~~~~~~~~~l~~aGf~v~~~ 231 (257)
T d2a14a1 205 REFSCVALEKGEVEQAVLDAGFDIEQL 231 (257)
T ss_dssp EEEECCCCCHHHHHHHHHHTTEEEEEE
T ss_pred ccccccCCCHHHHHHHHHHCCCEEEEE
Confidence 123455667789999998776
|
| >d1oria_ c.66.1.6 (A:) Protein arginine N-methyltransferase 1, PRMT1 {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Arginine methyltransferase domain: Protein arginine N-methyltransferase 1, PRMT1 species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=99.50 E-value=5.3e-14 Score=120.81 Aligned_cols=109 Identities=18% Similarity=0.267 Sum_probs=83.2
Q ss_pred HHHHhccCCCCCCeEEEecCCCCHHHHHHHHhCC-EEEEEcCCCcHHHHHHHHHHHHHcCCc--eEEEEeecCCCCcCcC
Q 026274 60 EYVWQQRYRFSGANVVELGAGTSLPGLVAAKVGS-NVTLTDDSNRIEVLKNMRRVCEMNKLN--CRVMGLTWGFLDASIF 136 (241)
Q Consensus 60 ~~l~~~~~~~~~~~VLElGcGtGl~sl~la~~g~-~V~~tD~~~~~~~l~~~~~n~~~n~~~--~~~~~l~w~~~~~~~~ 136 (241)
+.|.++...++|++|||||||+|++++++|+.|+ +|+++|.++ +...+++++..|+.. +.+...+..+. +..
T Consensus 23 ~ai~~~~~~~~~~~VLDiGcG~G~ls~~aa~~Ga~~V~avd~s~---~~~~a~~~~~~n~~~~~v~~~~~~~~~~--~~~ 97 (316)
T d1oria_ 23 NSMFHNRHLFKDKVVLDVGSGTGILCMFAAKAGARKVIGIECSS---ISDYAVKIVKANKLDHVVTIIKGKVEEV--ELP 97 (316)
T ss_dssp HHHHTCHHHHTTCEEEEETCTTSHHHHHHHHTTCSEEEEEECST---THHHHHHHHHHTTCTTTEEEEESCTTTC--CCS
T ss_pred HHHHhccccCCcCEEEEEecCCcHHHHHHHHhCCCEEEEEcCcH---HHhhhhhHHHHhCCccccceEeccHHHc--ccc
Confidence 3355555567899999999999999999999997 799999996 456777888888764 56666555543 333
Q ss_pred CCCCcEEEEcCCc---CCCccHHHHHHHHHHHhhcCCCeEEE
Q 026274 137 DLNPNIILGADVF---YDASAFDDLFATITYLLQSSPGSVFI 175 (241)
Q Consensus 137 ~~~fDlIl~~dvl---y~~~~~~~ll~~~~~lL~~~~~~~~~ 175 (241)
..+||+|++.-+. ++...++.+++.+.++|+ |+|.++
T Consensus 98 ~~~~D~ivs~~~~~~l~~e~~~~~~l~~~~r~Lk--p~G~ii 137 (316)
T d1oria_ 98 VEKVDIIISEWMGYCLFYESMLNTVLHARDKWLA--PDGLIF 137 (316)
T ss_dssp SSCEEEEEECCCBBTBTBTCCHHHHHHHHHHHEE--EEEEEE
T ss_pred cceeEEEeeeeeeeeeccHHHHHHHHHHHHhcCC--CCeEEE
Confidence 4689999875443 445678999999999999 555554
|
| >d1xvaa_ c.66.1.5 (A:) Glycine N-methyltransferase {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Glycine N-methyltransferase domain: Glycine N-methyltransferase species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=99.50 E-value=3.2e-14 Score=120.58 Aligned_cols=108 Identities=17% Similarity=0.242 Sum_probs=83.0
Q ss_pred CCCCeEEEecCCCCHHHHHHHHhCCEEEEEcCCCcHHHHHHHHHHHHHcCCc-----eEEEEeecCCCCcC-cCCCCCcE
Q 026274 69 FSGANVVELGAGTSLPGLVAAKVGSNVTLTDDSNRIEVLKNMRRVCEMNKLN-----CRVMGLTWGFLDAS-IFDLNPNI 142 (241)
Q Consensus 69 ~~~~~VLElGcGtGl~sl~la~~g~~V~~tD~~~~~~~l~~~~~n~~~n~~~-----~~~~~l~w~~~~~~-~~~~~fDl 142 (241)
..+++|||+|||+|..++.+|+.|++|+++|+|+ +||+.++++...++.. ..+...+|...... ....+||+
T Consensus 55 ~~~~~vLD~GcG~G~~~~~la~~g~~v~gvD~S~--~ml~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fd~ 132 (292)
T d1xvaa_ 55 HGCHRVLDVACGTGVDSIMLVEEGFSVTSVDASD--KMLKYALKERWNRRKEPAFDKWVIEEANWLTLDKDVPAGDGFDA 132 (292)
T ss_dssp TTCCEEEESSCTTSHHHHHHHHTTCEEEEEESCH--HHHHHHHHHHHHTTTSHHHHTCEEEECCGGGHHHHSCCTTCEEE
T ss_pred cCCCEEEEecCCCcHHHHHHHHcCCeeeeccCch--HHHHHHHHHHHhcccccccceeeeeeccccccccccCCCCCceE
Confidence 3567999999999999999999999999999995 7999999988776643 34555666433211 12358999
Q ss_pred EEEc-CCcCCCc-------cHHHHHHHHHHHhhcCCCeEEEEEeec
Q 026274 143 ILGA-DVFYDAS-------AFDDLFATITYLLQSSPGSVFITTYHN 180 (241)
Q Consensus 143 Il~~-dvly~~~-------~~~~ll~~~~~lL~~~~~~~~~~~~~~ 180 (241)
|++. +++.|.. +...+++.+.++|+ |||.+++.+..
T Consensus 133 v~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~Lk--pgG~li~~~~~ 176 (292)
T d1xvaa_ 133 VICLGNSFAHLPDSKGDQSEHRLALKNIASMVR--PGGLLVIDHRN 176 (292)
T ss_dssp EEECSSCGGGSCCTTSSSHHHHHHHHHHHHTEE--EEEEEEEEEEC
T ss_pred EEEecCchhhcCCcccChHHHHHHHHHHHHHcC--cCcEEEEeecC
Confidence 8864 5776643 46789999999999 78888887654
|
| >d1pjza_ c.66.1.36 (A:) Thiopurine S-methyltransferase {Pseudomonas syringae [TaxId: 317]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Thiopurine S-methyltransferase domain: Thiopurine S-methyltransferase species: Pseudomonas syringae [TaxId: 317]
Probab=99.49 E-value=5.1e-14 Score=111.18 Aligned_cols=106 Identities=10% Similarity=-0.067 Sum_probs=80.9
Q ss_pred CCCCCCeEEEecCCCCHHHHHHHHhCCEEEEEcCCCcHHHHHHHHHHHHHcCC-------------ceEEEEeecCCCCc
Q 026274 67 YRFSGANVVELGAGTSLPGLVAAKVGSNVTLTDDSNRIEVLKNMRRVCEMNKL-------------NCRVMGLTWGFLDA 133 (241)
Q Consensus 67 ~~~~~~~VLElGcGtGl~sl~la~~g~~V~~tD~~~~~~~l~~~~~n~~~n~~-------------~~~~~~l~w~~~~~ 133 (241)
...++.+|||+|||+|..++.+|+.|++|+++|+|+ +|++.+++.+...+. ...+...++.+...
T Consensus 17 ~~~~~~rvLd~GCG~G~~a~~la~~G~~V~gvD~S~--~~i~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~l~~ 94 (201)
T d1pjza_ 17 NVVPGARVLVPLCGKSQDMSWLSGQGYHVVGAELSE--AAVERYFTERGEQPHITSQGDFKVYAAPGIEIWCGDFFALTA 94 (201)
T ss_dssp CCCTTCEEEETTTCCSHHHHHHHHHCCEEEEEEECH--HHHHHHHHHHCSCSEEEEETTEEEEECSSSEEEEECCSSSTH
T ss_pred CCCCCCEEEEecCcCCHHHHHHHHcCCceEeecccH--HHHHHHHHHhccccchhhhhhhhhccccccceeccccccccc
Confidence 355789999999999999999999999999999995 699999988754332 23455555543211
Q ss_pred CcCCCCCcEEEEcCCcCCCc--cHHHHHHHHHHHhhcCCCeEEEEE
Q 026274 134 SIFDLNPNIILGADVFYDAS--AFDDLFATITYLLQSSPGSVFITT 177 (241)
Q Consensus 134 ~~~~~~fDlIl~~dvly~~~--~~~~ll~~~~~lL~~~~~~~~~~~ 177 (241)
.....||+|+++.++++.. .....++.+.++|+ |||.+++.
T Consensus 95 -~~~~~~D~i~~~~~l~~l~~~~~~~~~~~i~~~Lk--pgG~l~l~ 137 (201)
T d1pjza_ 95 -RDIGHCAAFYDRAAMIALPADMRERYVQHLEALMP--QACSGLLI 137 (201)
T ss_dssp -HHHHSEEEEEEESCGGGSCHHHHHHHHHHHHHHSC--SEEEEEEE
T ss_pred -ccccceeEEEEEeeeEecchhhhHHHHHHHHHhcC--CCcEEEEE
Confidence 1124799999999998864 46789999999998 56655544
|
| >d1im8a_ c.66.1.14 (A:) Hypothetical protein HI0319 (YecO) {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Hypothetical protein HI0319 (YecO) domain: Hypothetical protein HI0319 (YecO) species: Haemophilus influenzae [TaxId: 727]
Probab=99.49 E-value=2.4e-13 Score=110.71 Aligned_cols=105 Identities=16% Similarity=0.120 Sum_probs=81.3
Q ss_pred CCCCeEEEecCCCCHHHHHHHHh----CCEEEEEcCCCcHHHHHHHHHHHHHcCCceEEEEeecCCCCcCcCCCCCcEEE
Q 026274 69 FSGANVVELGAGTSLPGLVAAKV----GSNVTLTDDSNRIEVLKNMRRVCEMNKLNCRVMGLTWGFLDASIFDLNPNIIL 144 (241)
Q Consensus 69 ~~~~~VLElGcGtGl~sl~la~~----g~~V~~tD~~~~~~~l~~~~~n~~~n~~~~~~~~l~w~~~~~~~~~~~fDlIl 144 (241)
.++.+|||||||||..+..+++. +++|+++|+|+ +|++.+++++...+....+... ..+. .+....++|+|+
T Consensus 38 ~~~~~vLDlGCGtG~~~~~l~~~~~~~~~~v~giD~S~--~ml~~A~~~~~~~~~~~~~~~~-~~d~-~~~~~~~~d~i~ 113 (225)
T d1im8a_ 38 TADSNVYDLGCSRGAATLSARRNINQPNVKIIGIDNSQ--PMVERCRQHIAAYHSEIPVEIL-CNDI-RHVEIKNASMVI 113 (225)
T ss_dssp CTTCEEEEESCTTCHHHHHHHHTCCCSSCEEEEECSCH--HHHHHHHHHHHTSCCSSCEEEE-CSCT-TTCCCCSEEEEE
T ss_pred CCCCEEEEeccchhhHHHHHHHhhcCCCCceEEeCCCH--HHHHHHHHHhHhhcccchhhhc-cchh-hccccccceeeE
Confidence 46779999999999999999874 66999999995 7999999998877665444322 2222 223345789999
Q ss_pred EcCCcCCC--ccHHHHHHHHHHHhhcCCCeEEEEEee
Q 026274 145 GADVFYDA--SAFDDLFATITYLLQSSPGSVFITTYH 179 (241)
Q Consensus 145 ~~dvly~~--~~~~~ll~~~~~lL~~~~~~~~~~~~~ 179 (241)
++-++++. ++...+++.+.+.|+ |||.+++...
T Consensus 114 ~~~~l~~~~~~d~~~~l~~i~~~Lk--pgG~li~~~~ 148 (225)
T d1im8a_ 114 LNFTLQFLPPEDRIALLTKIYEGLN--PNGVLVLSEK 148 (225)
T ss_dssp EESCGGGSCGGGHHHHHHHHHHHEE--EEEEEEEEEE
T ss_pred EeeeccccChhhHHHHHHHHHHhCC--CCceeecccc
Confidence 99999875 578899999999999 6777776543
|
| >d1vlma_ c.66.1.41 (A:) Possible histamine N-methyltransferase TM1293 {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: UbiE/COQ5-like domain: Possible histamine N-methyltransferase TM1293 species: Thermotoga maritima [TaxId: 2336]
Probab=99.48 E-value=1.6e-13 Score=110.13 Aligned_cols=118 Identities=19% Similarity=0.128 Sum_probs=86.6
Q ss_pred CCCeEEEecCCCCHHHHHHHHhCCEEEEEcCCCcHHHHHHHHHHHHHcCCceEEEEeecCCCCcCcCCCCCcEEEEcCCc
Q 026274 70 SGANVVELGAGTSLPGLVAAKVGSNVTLTDDSNRIEVLKNMRRVCEMNKLNCRVMGLTWGFLDASIFDLNPNIILGADVF 149 (241)
Q Consensus 70 ~~~~VLElGcGtGl~sl~la~~g~~V~~tD~~~~~~~l~~~~~n~~~n~~~~~~~~l~w~~~~~~~~~~~fDlIl~~dvl 149 (241)
++.+|||||||+|..+..+ ++++++|.|+ +|++.++++ ++.+...+..+. +..+++||+|+++.++
T Consensus 36 ~~~~vLDiGcG~G~~~~~~----~~~~giD~s~--~~~~~a~~~------~~~~~~~d~~~l--~~~~~~fD~I~~~~~l 101 (208)
T d1vlma_ 36 PEGRGVEIGVGTGRFAVPL----KIKIGVEPSE--RMAEIARKR------GVFVLKGTAENL--PLKDESFDFALMVTTI 101 (208)
T ss_dssp CSSCEEEETCTTSTTHHHH----TCCEEEESCH--HHHHHHHHT------TCEEEECBTTBC--CSCTTCEEEEEEESCG
T ss_pred CCCeEEEECCCCccccccc----ceEEEEeCCh--hhccccccc------cccccccccccc--cccccccccccccccc
Confidence 4558999999999876665 3579999995 688887763 345666555443 3445789999999999
Q ss_pred CCCccHHHHHHHHHHHhhcCCCeEEEEEeeccC-----------------------chhHHHHHHHHcCCEEEEEec
Q 026274 150 YDASAFDDLFATITYLLQSSPGSVFITTYHNRS-----------------------GHHLIEFLMVKWGLKCVKLVD 203 (241)
Q Consensus 150 y~~~~~~~ll~~~~~lL~~~~~~~~~~~~~~r~-----------------------~~~~~~~~~~~~g~~~~~i~~ 203 (241)
+|.++...+++.+.++|+ |||.+++...... +...+..++++.||+...+..
T Consensus 102 ~h~~d~~~~l~~~~~~L~--pgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~l~~~l~~~Gf~~i~v~~ 176 (208)
T d1vlma_ 102 CFVDDPERALKEAYRILK--KGGYLIVGIVDRESFLGREYEKNKEKSVFYKNARFFSTEELMDLMRKAGFEEFKVVQ 176 (208)
T ss_dssp GGSSCHHHHHHHHHHHEE--EEEEEEEEEECSSSHHHHHHHHTTTC-CCSTTCCCCCHHHHHHHHHHTTCEEEEEEE
T ss_pred ccccccccchhhhhhcCC--CCceEEEEecCCcchhHHhhhhccccccccccccCCCHHHHHHHHHHcCCeEEEEEE
Confidence 999999999999999998 5666555532211 123455678899998777633
|
| >d2fk8a1 c.66.1.18 (A:22-301) Methoxy mycolic acid synthase 4, Mma4 {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Mycolic acid cyclopropane synthase domain: Methoxy mycolic acid synthase 4, Mma4 species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=99.48 E-value=4e-13 Score=113.49 Aligned_cols=115 Identities=14% Similarity=0.123 Sum_probs=89.9
Q ss_pred cHHHHHHHHHhccCCCCCCeEEEecCCCCHHHHHHHHh-CCEEEEEcCCCcHHHHHHHHHHHHHcCCceEE--EEeecCC
Q 026274 54 CSVILAEYVWQQRYRFSGANVVELGAGTSLPGLVAAKV-GSNVTLTDDSNRIEVLKNMRRVCEMNKLNCRV--MGLTWGF 130 (241)
Q Consensus 54 ~s~~L~~~l~~~~~~~~~~~VLElGcGtGl~sl~la~~-g~~V~~tD~~~~~~~l~~~~~n~~~n~~~~~~--~~l~w~~ 130 (241)
|..-..+.+.+.....+|.+|||||||+|-++..+++. |++|+++|+|+ +.++.+++.++..++...+ ...+..
T Consensus 36 AQ~~k~~~~~~~l~l~~g~~VLDiGCG~G~~a~~~a~~~g~~v~gi~ls~--~q~~~a~~~~~~~~l~~~~~~~~~d~~- 112 (280)
T d2fk8a1 36 AQYAKVDLNLDKLDLKPGMTLLDIGCGWGTTMRRAVERFDVNVIGLTLSK--NQHARCEQVLASIDTNRSRQVLLQGWE- 112 (280)
T ss_dssp HHHHHHHHHHTTSCCCTTCEEEEESCTTSHHHHHHHHHHCCEEEEEESCH--HHHHHHHHHHHTSCCSSCEEEEESCGG-
T ss_pred HHHHHHHHHHHHcCCCCCCEEEEecCCchHHHHHHHHhCceeEEEecchH--HHHHHHHHHHHhhccccchhhhhhhhh-
Confidence 34445566766667778999999999999999998875 89999999995 6899999999888775433 322332
Q ss_pred CCcCcCCCCCcEEEEcCCcCCC--ccHHHHHHHHHHHhhcCCCeEEEEE
Q 026274 131 LDASIFDLNPNIILGADVFYDA--SAFDDLFATITYLLQSSPGSVFITT 177 (241)
Q Consensus 131 ~~~~~~~~~fDlIl~~dvly~~--~~~~~ll~~~~~lL~~~~~~~~~~~ 177 (241)
..+.+||.|++.++++|. .+.+.+++.+.++|+ |||.+++.
T Consensus 113 ----~~~~~fD~i~si~~~eh~~~~~~~~~f~~i~~~Lk--pgG~~~i~ 155 (280)
T d2fk8a1 113 ----DFAEPVDRIVSIEAFEHFGHENYDDFFKRCFNIMP--ADGRMTVQ 155 (280)
T ss_dssp ----GCCCCCSEEEEESCGGGTCGGGHHHHHHHHHHHSC--TTCEEEEE
T ss_pred ----hhccchhhhhHhhHHHHhhhhhHHHHHHHHHhccC--CCceEEEE
Confidence 234689999999999997 466999999999999 56665543
|
| >d2fyta1 c.66.1.6 (A:238-548) Protein arginine N-methyltransferase 3, PRMT3 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Arginine methyltransferase domain: Protein arginine N-methyltransferase 3, PRMT3 species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.47 E-value=2.4e-13 Score=116.20 Aligned_cols=109 Identities=20% Similarity=0.284 Sum_probs=79.8
Q ss_pred HHHHhccCCCCCCeEEEecCCCCHHHHHHHHhCC-EEEEEcCCCcHHHHHHHHHHHHHcCC--ceEEEEeecCCCCcCcC
Q 026274 60 EYVWQQRYRFSGANVVELGAGTSLPGLVAAKVGS-NVTLTDDSNRIEVLKNMRRVCEMNKL--NCRVMGLTWGFLDASIF 136 (241)
Q Consensus 60 ~~l~~~~~~~~~~~VLElGcGtGl~sl~la~~g~-~V~~tD~~~~~~~l~~~~~n~~~n~~--~~~~~~l~w~~~~~~~~ 136 (241)
+.|.++...++|++|||||||+|++++.+|+.|+ +|+++|.++ .+. .+++++..++. ++.+...+..+. ...
T Consensus 25 ~ai~~~~~~~~~~~VLDiGcG~G~lsl~aa~~Ga~~V~aid~s~--~~~-~a~~~~~~~~~~~~i~~~~~~~~~l--~~~ 99 (311)
T d2fyta1 25 DFIYQNPHIFKDKVVLDVGCGTGILSMFAAKAGAKKVLGVDQSE--ILY-QAMDIIRLNKLEDTITLIKGKIEEV--HLP 99 (311)
T ss_dssp HHHHHCGGGTTTCEEEEETCTTSHHHHHHHHTTCSEEEEEESST--HHH-HHHHHHHHTTCTTTEEEEESCTTTS--CCS
T ss_pred HHHHhccccCCcCEEEEECCCCCHHHHHHHHcCCCEEEEEeCHH--HHH-HHHHHHHHhCCCccceEEEeeHHHh--cCc
Confidence 3456666778999999999999999999999998 899999997 244 56666666665 456665555443 233
Q ss_pred CCCCcEEEEcCCcCC---CccHHHHHHHHHHHhhcCCCeEEE
Q 026274 137 DLNPNIILGADVFYD---ASAFDDLFATITYLLQSSPGSVFI 175 (241)
Q Consensus 137 ~~~fDlIl~~dvly~---~~~~~~ll~~~~~lL~~~~~~~~~ 175 (241)
..+||+|++.-+.+. ...++.++....++|+ |||.++
T Consensus 100 ~~~~D~Ivse~~~~~~~~e~~~~~~~~a~~~~Lk--p~G~ii 139 (311)
T d2fyta1 100 VEKVDVIISEWMGYFLLFESMLDSVLYAKNKYLA--KGGSVY 139 (311)
T ss_dssp CSCEEEEEECCCBTTBTTTCHHHHHHHHHHHHEE--EEEEEE
T ss_pred cccceEEEEeeeeeecccccccHHHHHHHHhcCC--CCcEEe
Confidence 468999998544433 3567788888899998 555544
|
| >d1ri5a_ c.66.1.34 (A:) mRNA cap (Guanine N-7) methyltransferase {Fungus (Encephalitozoon cuniculi) [TaxId: 6035]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: mRNA cap (Guanine N-7) methyltransferase domain: mRNA cap (Guanine N-7) methyltransferase species: Fungus (Encephalitozoon cuniculi) [TaxId: 6035]
Probab=99.47 E-value=1.3e-13 Score=114.25 Aligned_cols=106 Identities=20% Similarity=0.111 Sum_probs=82.8
Q ss_pred CCCCeEEEecCCCCHHHHHHHHhCC-EEEEEcCCCcHHHHHHHHHHHHHcCC--ceEEEEeecCCCCcCcCCCCCcEEEE
Q 026274 69 FSGANVVELGAGTSLPGLVAAKVGS-NVTLTDDSNRIEVLKNMRRVCEMNKL--NCRVMGLTWGFLDASIFDLNPNIILG 145 (241)
Q Consensus 69 ~~~~~VLElGcGtGl~sl~la~~g~-~V~~tD~~~~~~~l~~~~~n~~~n~~--~~~~~~l~w~~~~~~~~~~~fDlIl~ 145 (241)
.++++|||||||+|.....+++.|. +|+|+|+|+ +|++.|++.+...+. ++.+...|..... .....+||+|++
T Consensus 23 ~~~~~VLDlGCG~G~~~~~~~~~~~~~v~GiD~S~--~~l~~A~~r~~~~~~~~~v~f~~~D~~~~~-~~~~~~fD~V~~ 99 (252)
T d1ri5a_ 23 KRGDSVLDLGCGKGGDLLKYERAGIGEYYGVDIAE--VSINDARVRARNMKRRFKVFFRAQDSYGRH-MDLGKEFDVISS 99 (252)
T ss_dssp CTTCEEEEETCTTTTTHHHHHHHTCSEEEEEESCH--HHHHHHHHHHHTSCCSSEEEEEESCTTTSC-CCCSSCEEEEEE
T ss_pred CCcCEEEEecccCcHHHHHHHHcCCCeEEEecCCH--HHHHHHHHHHHhcCCCcceEEEEcchhhhc-ccccccceEEEE
Confidence 4678999999999988888888876 899999995 799999988876655 4566666653321 113458999999
Q ss_pred cCCcCCC----ccHHHHHHHHHHHhhcCCCeEEEEEee
Q 026274 146 ADVFYDA----SAFDDLFATITYLLQSSPGSVFITTYH 179 (241)
Q Consensus 146 ~dvly~~----~~~~~ll~~~~~lL~~~~~~~~~~~~~ 179 (241)
..+++|. .....+++.+.++|+ |||.+++...
T Consensus 100 ~~~l~~~~~~~~~~~~~l~~i~~~Lk--~gG~~i~~~~ 135 (252)
T d1ri5a_ 100 QFSFHYAFSTSESLDIAQRNIARHLR--PGGYFIMTVP 135 (252)
T ss_dssp ESCGGGGGSSHHHHHHHHHHHHHTEE--EEEEEEEEEE
T ss_pred cceeeecCCCHHHHHHHHHHHhceeC--CCCEEEEEec
Confidence 9999874 356788999999999 6788777654
|
| >d1ws6a1 c.66.1.46 (A:15-185) Methyltransferase TTHA0928 {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: YhhF-like domain: Methyltransferase TTHA0928 species: Thermus thermophilus [TaxId: 274]
Probab=99.47 E-value=9.7e-14 Score=109.07 Aligned_cols=118 Identities=16% Similarity=0.165 Sum_probs=84.0
Q ss_pred HHHHHHHhccCCCCCCeEEEecCCCCHHHHHHHHhCCEEEEEcCCCcHHHHHHHHHHHHHcCCceEEEEeecCCCC--cC
Q 026274 57 ILAEYVWQQRYRFSGANVVELGAGTSLPGLVAAKVGSNVTLTDDSNRIEVLKNMRRVCEMNKLNCRVMGLTWGFLD--AS 134 (241)
Q Consensus 57 ~L~~~l~~~~~~~~~~~VLElGcGtGl~sl~la~~g~~V~~tD~~~~~~~l~~~~~n~~~n~~~~~~~~l~w~~~~--~~ 134 (241)
.|..+|... ..+|.+|||+|||+|.+|+.+++.|++|+++|.++ ++++.+++|++.++...++...+..... ..
T Consensus 30 ~lf~~l~~~--~~~g~~vLDl~~G~G~~~i~a~~~ga~vv~vD~~~--~a~~~~~~N~~~~~~~~~v~~~~~d~~~~~~~ 105 (171)
T d1ws6a1 30 ALFDYLRLR--YPRRGRFLDPFAGSGAVGLEAASEGWEAVLVEKDP--EAVRLLKENVRRTGLGARVVALPVEVFLPEAK 105 (171)
T ss_dssp HHHHHHHHH--CTTCCEEEEETCSSCHHHHHHHHTTCEEEEECCCH--HHHHHHHHHHHHHTCCCEEECSCHHHHHHHHH
T ss_pred HHHHHhhcc--ccCCCeEEEeccccchhhhhhhhccchhhhcccCH--HHHhhhhHHHHhhccccceeeeehhccccccc
Confidence 344455432 35788999999999999999999999999999995 7999999999999987766654433211 12
Q ss_pred cCCCCCcEEEEcCCcCCCccHHHHHHHHH-HHhhcCCCeEEEEEeecc
Q 026274 135 IFDLNPNIILGADVFYDASAFDDLFATIT-YLLQSSPGSVFITTYHNR 181 (241)
Q Consensus 135 ~~~~~fDlIl~~dvly~~~~~~~ll~~~~-~lL~~~~~~~~~~~~~~r 181 (241)
....+||+|++ |+-|.....+.+...+. .+|+ +++++++.+...
T Consensus 106 ~~~~~fD~If~-DPPY~~~~~~~l~~l~~~~ll~--~~g~ivie~~~~ 150 (171)
T d1ws6a1 106 AQGERFTVAFM-APPYAMDLAALFGELLASGLVE--AGGLYVLQHPKD 150 (171)
T ss_dssp HTTCCEEEEEE-CCCTTSCTTHHHHHHHHHTCEE--EEEEEEEEEETT
T ss_pred ccCCccceeEE-ccccccCHHHHHHHHHHcCCcC--CCeEEEEEecCC
Confidence 23458999997 55566555444444443 3555 678888876543
|
| >d1kpia_ c.66.1.18 (A:) CmaA2 {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Mycolic acid cyclopropane synthase domain: CmaA2 species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=99.47 E-value=1.7e-12 Score=110.14 Aligned_cols=118 Identities=13% Similarity=0.072 Sum_probs=90.3
Q ss_pred ccHHHHHHHHHhccCCCCCCeEEEecCCCCHHHHHHHH-hCCEEEEEcCCCcHHHHHHHHHHHHHcCCceEEEEeecCCC
Q 026274 53 PCSVILAEYVWQQRYRFSGANVVELGAGTSLPGLVAAK-VGSNVTLTDDSNRIEVLKNMRRVCEMNKLNCRVMGLTWGFL 131 (241)
Q Consensus 53 ~~s~~L~~~l~~~~~~~~~~~VLElGcGtGl~sl~la~-~g~~V~~tD~~~~~~~l~~~~~n~~~n~~~~~~~~l~w~~~ 131 (241)
.|..-..+++.+.....+|.+|||||||.|-+++.+|+ .|++|+++++|+ +.++.+++.+...++...+. ..+.+.
T Consensus 44 ~Aq~~k~~~~~~~l~l~~G~~VLDiGCG~G~~~~~~a~~~g~~v~git~s~--~q~~~a~~~~~~~~l~~~v~-~~~~d~ 120 (291)
T d1kpia_ 44 EAQYAKRKLALDKLNLEPGMTLLDIGCGWGSTMRHAVAEYDVNVIGLTLSE--NQYAHDKAMFDEVDSPRRKE-VRIQGW 120 (291)
T ss_dssp HHHHHHHHHHHHTTCCCTTCEEEEETCTTSHHHHHHHHHHCCEEEEEESCH--HHHHHHHHHHHHSCCSSCEE-EEECCG
T ss_pred HHHHHHHHHHHHhcCCCCCCEEEEecCcchHHHHHHHHhcCcceeeccchH--HHHHHHHHHHHhhccchhhh-hhhhcc
Confidence 34455566777777778899999999999999998875 699999999995 68888888888877753322 233332
Q ss_pred CcCcCCCCCcEEEEcCCcCCCc---------cHHHHHHHHHHHhhcCCCeEEEEE
Q 026274 132 DASIFDLNPNIILGADVFYDAS---------AFDDLFATITYLLQSSPGSVFITT 177 (241)
Q Consensus 132 ~~~~~~~~fDlIl~~dvly~~~---------~~~~ll~~~~~lL~~~~~~~~~~~ 177 (241)
...+++||.|++-.++.|.. +.+.+++.+.++|+ |||.+++.
T Consensus 121 --~~~~~~fD~i~sie~~eH~~~~~~~~~~~~~~~~f~~i~~~Lk--pgG~~~l~ 171 (291)
T d1kpia_ 121 --EEFDEPVDRIVSLGAFEHFADGAGDAGFERYDTFFKKFYNLTP--DDGRMLLH 171 (291)
T ss_dssp --GGCCCCCSEEEEESCGGGTTCCSSCCSTTHHHHHHHHHHHTSC--TTCEEEEE
T ss_pred --cccccccceEeechhHHhcchhhhhhHHHHHHHHHHHHHHhCC--CCCceEEE
Confidence 22356899999999998864 47899999999998 56655543
|
| >d1g8sa_ c.66.1.3 (A:) Fibrillarin homologue {Archaeon Methanococcus jannaschii [TaxId: 2190]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Fibrillarin homologue domain: Fibrillarin homologue species: Archaeon Methanococcus jannaschii [TaxId: 2190]
Probab=99.46 E-value=9.5e-13 Score=108.10 Aligned_cols=150 Identities=13% Similarity=0.090 Sum_probs=106.7
Q ss_pred cceEEeccHH-HHHHHHHhcc---CCCCCCeEEEecCCCCHHHHHHHHhC--CEEEEEcCCCcHHHHHHHHHHHHHcCCc
Q 026274 47 YGLFVWPCSV-ILAEYVWQQR---YRFSGANVVELGAGTSLPGLVAAKVG--SNVTLTDDSNRIEVLKNMRRVCEMNKLN 120 (241)
Q Consensus 47 ~g~~~W~~s~-~L~~~l~~~~---~~~~~~~VLElGcGtGl~sl~la~~g--~~V~~tD~~~~~~~l~~~~~n~~~n~~~ 120 (241)
...+.|+.-. .|+..|.... ...+|.+|||||||+|..+..+|..+ ..|+++|+++ .|++.++.++..+. +
T Consensus 47 ~e~r~w~p~rsklaA~i~~gl~~l~ikpG~~VLDlGcGsG~~~~~la~~~~~g~V~aVDiS~--~~i~~a~~~a~~~~-n 123 (230)
T d1g8sa_ 47 EEYRIWNPNKSKLAAAIIKGLKVMPIKRDSKILYLGASAGTTPSHVADIADKGIVYAIEYAP--RIMRELLDACAERE-N 123 (230)
T ss_dssp EEEEECCTTTCHHHHHHHTTCCCCCCCTTCEEEEESCCSSHHHHHHHHHTTTSEEEEEESCH--HHHHHHHHHTTTCT-T
T ss_pred ceeeeECCCccHHHHHHHhhHHhCCCCCCCEEEEeCEEcCHHHHHHHHhCCCCEEEEEeCcH--HHHHHHHHHHhhhc-c
Confidence 4678898766 6666666533 34578999999999999999999975 4899999995 79999988876554 3
Q ss_pred eEEEEeecCCCCcCcCCCCCcEEEEcCCcCCCccHHHHHHHHHHHhhcCCCeEEEEEeeccCc------hh---HHHHHH
Q 026274 121 CRVMGLTWGFLDASIFDLNPNIILGADVFYDASAFDDLFATITYLLQSSPGSVFITTYHNRSG------HH---LIEFLM 191 (241)
Q Consensus 121 ~~~~~l~w~~~~~~~~~~~fDlIl~~dvly~~~~~~~ll~~~~~lL~~~~~~~~~~~~~~r~~------~~---~~~~~~ 191 (241)
+.....+..... ...+..+|+++....+++....+.+++.+.+.|+ |||.+++....+.. .. .....+
T Consensus 124 i~~i~~d~~~~~-~~~~~~~~v~~i~~~~~~~~~~~~~l~~~~r~LK--pgG~~~i~~k~~~~d~~~~~~~~~~e~~~~L 200 (230)
T d1g8sa_ 124 IIPILGDANKPQ-EYANIVEKVDVIYEDVAQPNQAEILIKNAKWFLK--KGGYGMIAIKARSIDVTKDPKEIFKEQKEIL 200 (230)
T ss_dssp EEEEECCTTCGG-GGTTTCCCEEEEEECCCSTTHHHHHHHHHHHHEE--EEEEEEEEEEGGGTCSSSCHHHHHHHHHHHH
T ss_pred cceEEEeeccCc-ccccccceeEEeeccccchHHHHHHHHHHHHhcc--cCceEEEEeeccccCCCCCHHHHHHHHHHHH
Confidence 344445554432 2334567887777778888899999999999999 56666665333221 11 222346
Q ss_pred HHcCCEEEEEe
Q 026274 192 VKWGLKCVKLV 202 (241)
Q Consensus 192 ~~~g~~~~~i~ 202 (241)
++.||+.....
T Consensus 201 ~~aGF~ive~i 211 (230)
T d1g8sa_ 201 EAGGFKIVDEV 211 (230)
T ss_dssp HHHTEEEEEEE
T ss_pred HHcCCEEEEEe
Confidence 78899988764
|
| >d1kpga_ c.66.1.18 (A:) CmaA1 {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Mycolic acid cyclopropane synthase domain: CmaA1 species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=99.46 E-value=2.1e-12 Score=109.20 Aligned_cols=114 Identities=16% Similarity=0.213 Sum_probs=91.4
Q ss_pred ccHHHHHHHHHhccCCCCCCeEEEecCCCCHHHHHHHH-hCCEEEEEcCCCcHHHHHHHHHHHHHcCC--ceEEEEeecC
Q 026274 53 PCSVILAEYVWQQRYRFSGANVVELGAGTSLPGLVAAK-VGSNVTLTDDSNRIEVLKNMRRVCEMNKL--NCRVMGLTWG 129 (241)
Q Consensus 53 ~~s~~L~~~l~~~~~~~~~~~VLElGcGtGl~sl~la~-~g~~V~~tD~~~~~~~l~~~~~n~~~n~~--~~~~~~l~w~ 129 (241)
.|..-+.+++.......+|.+|||||||.|-+++.+|+ .|++|+++++|+ +.++.+++.+...++ ++++...|+.
T Consensus 45 eAQ~~k~~~~~~~l~l~~G~~VLDiGCG~G~~a~~~a~~~g~~v~git~s~--~Q~~~a~~~~~~~g~~~~v~~~~~d~~ 122 (285)
T d1kpga_ 45 EAQIAKIDLALGKLGLQPGMTLLDVGCGWGATMMRAVEKYDVNVVGLTLSK--NQANHVQQLVANSENLRSKRVLLAGWE 122 (285)
T ss_dssp HHHHHHHHHHHTTTTCCTTCEEEEETCTTSHHHHHHHHHHCCEEEEEESCH--HHHHHHHHHHHTCCCCSCEEEEESCGG
T ss_pred HHHHHHHHHHHHHcCCCCCCEEEEecCcchHHHHHHHhcCCcceEEEeccH--HHHHHHHHHHHhhhhhhhhHHHHhhhh
Confidence 45566678888777778999999999999999998776 589999999995 688889888877765 4555555554
Q ss_pred CCCcCcCCCCCcEEEEcCCcCCC--ccHHHHHHHHHHHhhcCCCeEEE
Q 026274 130 FLDASIFDLNPNIILGADVFYDA--SAFDDLFATITYLLQSSPGSVFI 175 (241)
Q Consensus 130 ~~~~~~~~~~fDlIl~~dvly~~--~~~~~ll~~~~~lL~~~~~~~~~ 175 (241)
+. +.+||.|++-..+.|. .+.+.+++.+.++|+ |||.++
T Consensus 123 ~~-----~~~fD~i~si~~~eh~~~~~~~~~~~~~~r~Lk--pgG~~~ 163 (285)
T d1kpga_ 123 QF-----DEPVDRIVSIGAFEHFGHERYDAFFSLAHRLLP--ADGVML 163 (285)
T ss_dssp GC-----CCCCSEEEEESCGGGTCTTTHHHHHHHHHHHSC--TTCEEE
T ss_pred cc-----cccccceeeehhhhhcCchhHHHHHHHHHhhcC--CCCcEE
Confidence 32 4589999999999997 567899999999998 455444
|
| >d1ne2a_ c.66.1.32 (A:) Hypothetical protein Ta1320 {Archaeon Thermoplasma acidophilum [TaxId: 2303]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Ta1320-like domain: Hypothetical protein Ta1320 species: Archaeon Thermoplasma acidophilum [TaxId: 2303]
Probab=99.46 E-value=9e-13 Score=105.65 Aligned_cols=73 Identities=16% Similarity=0.223 Sum_probs=59.1
Q ss_pred cCCCCCCeEEEecCCCCHHHHHHHHhCC-EEEEEcCCCcHHHHHHHHHHHHHcCCceEEEEeecCCCCcCcCCCCCcEEE
Q 026274 66 RYRFSGANVVELGAGTSLPGLVAAKVGS-NVTLTDDSNRIEVLKNMRRVCEMNKLNCRVMGLTWGFLDASIFDLNPNIIL 144 (241)
Q Consensus 66 ~~~~~~~~VLElGcGtGl~sl~la~~g~-~V~~tD~~~~~~~l~~~~~n~~~n~~~~~~~~l~w~~~~~~~~~~~fDlIl 144 (241)
...+.|++|||+|||||.+|+.+++.|+ +|+++|+++ ++++.+++|+. ++.+...|+.+ .+++||+|+
T Consensus 44 ~~dl~Gk~VLDlGcGtG~l~i~a~~~ga~~V~~vDid~--~a~~~ar~N~~----~~~~~~~D~~~-----l~~~fD~Vi 112 (197)
T d1ne2a_ 44 DGNIGGRSVIDAGTGNGILACGSYLLGAESVTAFDIDP--DAIETAKRNCG----GVNFMVADVSE-----ISGKYDTWI 112 (197)
T ss_dssp HTSSBTSEEEEETCTTCHHHHHHHHTTBSEEEEEESCH--HHHHHHHHHCT----TSEEEECCGGG-----CCCCEEEEE
T ss_pred cCCCCCCEEEEeCCCCcHHHHHHHHcCCCcccccccCH--HHHHHHHHccc----cccEEEEehhh-----cCCcceEEE
Confidence 3567899999999999999999999987 799999995 69998888764 35566655543 346899999
Q ss_pred EcCCc
Q 026274 145 GADVF 149 (241)
Q Consensus 145 ~~dvl 149 (241)
++.++
T Consensus 113 ~NPPf 117 (197)
T d1ne2a_ 113 MNPPF 117 (197)
T ss_dssp ECCCC
T ss_pred eCccc
Confidence 98775
|
| >d1zx0a1 c.66.1.16 (A:8-236) Guanidinoacetate methyltransferase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Guanidinoacetate methyltransferase domain: Guanidinoacetate methyltransferase species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.45 E-value=4e-14 Score=116.09 Aligned_cols=104 Identities=16% Similarity=0.220 Sum_probs=83.6
Q ss_pred CCCCeEEEecCCCCHHHHHHHHhC-CEEEEEcCCCcHHHHHHHHHHHHHcCCceEEEEeecCCCCcCcCCCCCcEEE---
Q 026274 69 FSGANVVELGAGTSLPGLVAAKVG-SNVTLTDDSNRIEVLKNMRRVCEMNKLNCRVMGLTWGFLDASIFDLNPNIIL--- 144 (241)
Q Consensus 69 ~~~~~VLElGcGtGl~sl~la~~g-~~V~~tD~~~~~~~l~~~~~n~~~n~~~~~~~~l~w~~~~~~~~~~~fDlIl--- 144 (241)
.+|.+|||||||+|..+..+++.+ ++|+++|+|+ ++++.++++....+..+.+...++........+.+||.|+
T Consensus 52 ~~g~~VLdIGcG~G~~a~~~a~~~~~~v~~id~s~--~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fD~i~fD~ 129 (229)
T d1zx0a1 52 SKGGRVLEVGFGMAIAASKVQEAPIDEHWIIECND--GVFQRLRDWAPRQTHKVIPLKGLWEDVAPTLPDGHFDGILYDT 129 (229)
T ss_dssp TTCEEEEEECCTTSHHHHHHHTSCEEEEEEEECCH--HHHHHHHHHGGGCSSEEEEEESCHHHHGGGSCTTCEEEEEECC
T ss_pred cCCCeEEEeeccchHHHHHHHHcCCCeEEEeCCCH--HHHHHHHHHhhhcccccccccccccccccccccccccceeecc
Confidence 367899999999999999999875 5899999995 7999999998887777777766665544455567899987
Q ss_pred --EcCCcCCCccHHHHHHHHHHHhhcCCCeEEEE
Q 026274 145 --GADVFYDASAFDDLFATITYLLQSSPGSVFIT 176 (241)
Q Consensus 145 --~~dvly~~~~~~~ll~~~~~lL~~~~~~~~~~ 176 (241)
+...+++..+.+.+++.+.++|+ |||+|++
T Consensus 130 ~~~~~~~~~~~~~~~~~~~~~r~Lk--pGG~~~~ 161 (229)
T d1zx0a1 130 YPLSEETWHTHQFNFIKNHAFRLLK--PGGVLTY 161 (229)
T ss_dssp CCCBGGGTTTHHHHHHHHTHHHHEE--EEEEEEE
T ss_pred cccccccccccCHHHHHHHHHHHcC--CCcEEEE
Confidence 34555666778899999999999 6777665
|
| >d1tw3a2 c.66.1.12 (A:99-351) Carminomycin 4-O-methyltransferase {Streptomyces peucetius [TaxId: 1950]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Plant O-methyltransferase, C-terminal domain domain: Carminomycin 4-O-methyltransferase species: Streptomyces peucetius [TaxId: 1950]
Probab=99.41 E-value=2.2e-12 Score=106.95 Aligned_cols=125 Identities=13% Similarity=0.112 Sum_probs=91.6
Q ss_pred CCCCeEEEecCCCCHHHHHHHHhC--CEEEEEcCCCcHHHHHHHHHHHHHcCC--ceEEEEeecCCCCcCcCCCCCcEEE
Q 026274 69 FSGANVVELGAGTSLPGLVAAKVG--SNVTLTDDSNRIEVLKNMRRVCEMNKL--NCRVMGLTWGFLDASIFDLNPNIIL 144 (241)
Q Consensus 69 ~~~~~VLElGcGtGl~sl~la~~g--~~V~~tD~~~~~~~l~~~~~n~~~n~~--~~~~~~l~w~~~~~~~~~~~fDlIl 144 (241)
...++|||||||+|..++.+++.. .++++.|+++ +++.+++++...+. ++++...|+.+. ...+||+|+
T Consensus 79 ~~~~~VLDvGcG~G~~~~~la~~~p~~~~~~~D~~~---~~~~a~~~~~~~~~~~rv~~~~~D~~~~----~~~~~D~v~ 151 (253)
T d1tw3a2 79 TNVRHVLDVGGGKGGFAAAIARRAPHVSATVLEMAG---TVDTARSYLKDEGLSDRVDVVEGDFFEP----LPRKADAII 151 (253)
T ss_dssp TTCSEEEEETCTTSHHHHHHHHHCTTCEEEEEECTT---HHHHHHHHHHHTTCTTTEEEEECCTTSC----CSSCEEEEE
T ss_pred ccCCEEEEeCCCCCHHHHHHHHhcceeEEEEccCHH---HHHHHHHHHHHhhcccchhhccccchhh----cccchhhee
Confidence 345799999999999999999974 4899999853 89999999888775 467776665432 234799999
Q ss_pred EcCCcCCCccH--HHHHHHHHHHhhcCCCeEEEEEeec----c---------------------CchhHHHHHHHHcCCE
Q 026274 145 GADVFYDASAF--DDLFATITYLLQSSPGSVFITTYHN----R---------------------SGHHLIEFLMVKWGLK 197 (241)
Q Consensus 145 ~~dvly~~~~~--~~ll~~~~~lL~~~~~~~~~~~~~~----r---------------------~~~~~~~~~~~~~g~~ 197 (241)
++.++++.++. ..+++.+.+.|+ |||.+++.... . ++......++++.||+
T Consensus 152 ~~~vlh~~~d~~~~~~L~~~~~~Lk--PGG~l~i~e~~~~~~~~~~~~~~~~dl~~~~~~~g~~rt~~e~~~ll~~AGf~ 229 (253)
T d1tw3a2 152 LSFVLLNWPDHDAVRILTRCAEALE--PGGRILIHERDDLHENSFNEQFTELDLRMLVFLGGALRTREKWDGLAASAGLV 229 (253)
T ss_dssp EESCGGGSCHHHHHHHHHHHHHTEE--EEEEEEEEECCBCGGGCCSHHHHHHHHHHHHHHSCCCCBHHHHHHHHHHTTEE
T ss_pred eccccccCCchhhHHHHHHHHHhcC--CCcEEEEEeccCCCCCcchhHHHHhhHHHHhhCCCcCCCHHHHHHHHHHCCCe
Confidence 99999886544 578999999998 56655543111 0 1223334567899999
Q ss_pred EEEEe
Q 026274 198 CVKLV 202 (241)
Q Consensus 198 ~~~i~ 202 (241)
+..+.
T Consensus 230 ~~~v~ 234 (253)
T d1tw3a2 230 VEEVR 234 (253)
T ss_dssp EEEEE
T ss_pred EEEEE
Confidence 88773
|
| >d1o54a_ c.66.1.13 (A:) Hypothetical protein TM0748 {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: tRNA(1-methyladenosine) methyltransferase-like domain: Hypothetical protein TM0748 species: Thermotoga maritima [TaxId: 2336]
Probab=99.40 E-value=3.4e-12 Score=106.92 Aligned_cols=132 Identities=13% Similarity=0.055 Sum_probs=91.5
Q ss_pred HHhccCCCCCCeEEEecCCCCHHHHHHHHh-C--CEEEEEcCCCcHHHHHHHHHHHHHcCCceEEEEeecCCCCcCcCCC
Q 026274 62 VWQQRYRFSGANVVELGAGTSLPGLVAAKV-G--SNVTLTDDSNRIEVLKNMRRVCEMNKLNCRVMGLTWGFLDASIFDL 138 (241)
Q Consensus 62 l~~~~~~~~~~~VLElGcGtGl~sl~la~~-g--~~V~~tD~~~~~~~l~~~~~n~~~n~~~~~~~~l~w~~~~~~~~~~ 138 (241)
|.......+|.+|||+|||+|.+++.+|+. + .+|+++|+++ ++++.+++|++..+....+ .+..++........
T Consensus 95 Ii~~l~i~pG~~VLDiG~GsG~lt~~lA~~~~~~G~V~~vD~~~--~~~~~A~~~~~~~g~~~~v-~~~~~d~~~~~~~~ 171 (266)
T d1o54a_ 95 IAMMLDVKEGDRIIDTGVGSGAMCAVLARAVGSSGKVFAYEKRE--EFAKLAESNLTKWGLIERV-TIKVRDISEGFDEK 171 (266)
T ss_dssp HHHHTTCCTTCEEEEECCTTSHHHHHHHHHTTTTCEEEEECCCH--HHHHHHHHHHHHTTCGGGE-EEECCCGGGCCSCC
T ss_pred HHHhhCCCCCCEEEECCCCCCHHHHHHHHHhCCCcEEEEEeCCH--HHHHHHHHHHHHhccccCc-EEEecccccccccc
Confidence 333345668999999999999999999986 3 4999999995 7999999999988863222 23344433344445
Q ss_pred CCcEEEEcCCcCCCccHHHHHHHHHHHhhcCCCeEEEEEeeccCchhHHHHHHHHcCCEEEEEec
Q 026274 139 NPNIILGADVFYDASAFDDLFATITYLLQSSPGSVFITTYHNRSGHHLIEFLMVKWGLKCVKLVD 203 (241)
Q Consensus 139 ~fDlIl~~dvly~~~~~~~ll~~~~~lL~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~i~~ 203 (241)
.||.|+. +.++...+++.+.++|| |||.+++-.+.-.........+++.||....+.+
T Consensus 172 ~~D~V~~-----d~p~p~~~l~~~~~~LK--pGG~lv~~~P~~~Qv~~~~~~l~~~gF~~i~~~E 229 (266)
T d1o54a_ 172 DVDALFL-----DVPDPWNYIDKCWEALK--GGGRFATVCPTTNQVQETLKKLQELPFIRIEVWE 229 (266)
T ss_dssp SEEEEEE-----CCSCGGGTHHHHHHHEE--EEEEEEEEESSHHHHHHHHHHHHHSSEEEEEEEC
T ss_pred ceeeeEe-----cCCCHHHHHHHHHhhcC--CCCEEEEEeCcccHHHHHHHHHHHCCceeEEEEE
Confidence 7888874 67788899999999999 5565443322221112222335778998777655
|
| >d1jqea_ c.66.1.19 (A:) Histamine methyltransferase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Histamine methyltransferase domain: Histamine methyltransferase species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.39 E-value=3.3e-13 Score=113.35 Aligned_cols=102 Identities=13% Similarity=0.078 Sum_probs=73.1
Q ss_pred CeEEEecCCCCHHHHHHHHh------C--CEEEEEcCCCcHHHHHHHHHHHHHcC-C---ceEEEEeecCCC----CcCc
Q 026274 72 ANVVELGAGTSLPGLVAAKV------G--SNVTLTDDSNRIEVLKNMRRVCEMNK-L---NCRVMGLTWGFL----DASI 135 (241)
Q Consensus 72 ~~VLElGcGtGl~sl~la~~------g--~~V~~tD~~~~~~~l~~~~~n~~~n~-~---~~~~~~l~w~~~----~~~~ 135 (241)
.+|||+|||+|.++..+++. + .+++++|.++ .|++.+++++.... . ...+....+.+. ....
T Consensus 42 ~~VLDiGcG~G~~~~~ll~~l~~~~~~~~~~~~~vD~s~--~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 119 (280)
T d1jqea_ 42 IKILSIGGGAGEIDLQILSKVQAQYPGVCINNEVVEPSA--EQIAKYKELVAKISNLENVKFAWHKETSSEYQSRMLEKK 119 (280)
T ss_dssp EEEEEETCTTSHHHHHHHHHHHHHSTTCEEEEEEECCCH--HHHHHHHHHHTTCCSCTTEEEEEECSCHHHHHHHHTTSS
T ss_pred CeEEEEcCCCCHHHHHHHHHhhhhccCCceEEEEEeCcH--HHHHHHHHHHhhccccccccccchhhhhhhhcchhcccC
Confidence 37999999999887776653 2 2689999995 69999998876432 1 222222222111 1123
Q ss_pred CCCCCcEEEEcCCcCCCccHHHHHHHHHHHhhcCCCeEEEEE
Q 026274 136 FDLNPNIILGADVFYDASAFDDLFATITYLLQSSPGSVFITT 177 (241)
Q Consensus 136 ~~~~fDlIl~~dvly~~~~~~~ll~~~~~lL~~~~~~~~~~~ 177 (241)
.+.+||+|++..++||.+++..+++.+.++|+ |||.+++.
T Consensus 120 ~~~~fD~I~~~~~l~~~~d~~~~l~~l~~~Lk--pgG~l~i~ 159 (280)
T d1jqea_ 120 ELQKWDFIHMIQMLYYVKDIPATLKFFHSLLG--TNAKMLII 159 (280)
T ss_dssp SCCCEEEEEEESCGGGCSCHHHHHHHHHHTEE--EEEEEEEE
T ss_pred CCCceeEEEEccceecCCCHHHHHHHHHhhCC--CCCEEEEE
Confidence 45689999999999999999999999999998 55655544
|
| >d1yb2a1 c.66.1.13 (A:6-255) Hypothetical protein Ta0852 {Thermoplasma acidophilum [TaxId: 2303]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: tRNA(1-methyladenosine) methyltransferase-like domain: Hypothetical protein Ta0852 species: Thermoplasma acidophilum [TaxId: 2303]
Probab=99.38 E-value=1.8e-12 Score=107.63 Aligned_cols=128 Identities=15% Similarity=0.100 Sum_probs=88.2
Q ss_pred HHhccCCCCCCeEEEecCCCCHHHHHHHHh-C--CEEEEEcCCCcHHHHHHHHHHHHHcCC--ceEEEEeecCCCCcCcC
Q 026274 62 VWQQRYRFSGANVVELGAGTSLPGLVAAKV-G--SNVTLTDDSNRIEVLKNMRRVCEMNKL--NCRVMGLTWGFLDASIF 136 (241)
Q Consensus 62 l~~~~~~~~~~~VLElGcGtGl~sl~la~~-g--~~V~~tD~~~~~~~l~~~~~n~~~n~~--~~~~~~l~w~~~~~~~~ 136 (241)
+.......+|.+|||+|||+|.+++.+|+. + .+|+++|.++ ++++.+++|++.++. ++++...|+.+ ...
T Consensus 77 Ii~~l~i~pG~rVLEiG~GsG~lt~~la~~v~~~g~V~~vD~~e--~~~~~A~~n~~~~~~~~nv~~~~~Di~~---~~~ 151 (250)
T d1yb2a1 77 IIMRCGLRPGMDILEVGVGSGNMSSYILYALNGKGTLTVVERDE--DNLKKAMDNLSEFYDIGNVRTSRSDIAD---FIS 151 (250)
T ss_dssp ----CCCCTTCEEEEECCTTSHHHHHHHHHHTTSSEEEEECSCH--HHHHHHHHHHHTTSCCTTEEEECSCTTT---CCC
T ss_pred HHHHcCCCCcCEEEEeeeeCcHHHHHHHHHhCCCcEEEEEECCH--HHHHHHHHHHHHhcCCCceEEEEeeeec---ccc
Confidence 334445668899999999999999999985 3 4899999995 799999999987643 56666555543 334
Q ss_pred CCCCcEEEEcCCcCCCccHHHHHHHHHHHhhcCCCeEEEEEeeccCchhHHHHHHHHcCCEEEEE
Q 026274 137 DLNPNIILGADVFYDASAFDDLFATITYLLQSSPGSVFITTYHNRSGHHLIEFLMVKWGLKCVKL 201 (241)
Q Consensus 137 ~~~fDlIl~~dvly~~~~~~~ll~~~~~lL~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~i 201 (241)
+..||.|+. +.++...+++.+.++|+ |||.+++-.+.-.........+++.||.....
T Consensus 152 ~~~fD~V~l-----d~p~p~~~l~~~~~~LK--pGG~lv~~~P~i~Qv~~~~~~l~~~gf~~i~~ 209 (250)
T d1yb2a1 152 DQMYDAVIA-----DIPDPWNHVQKIASMMK--PGSVATFYLPNFDQSEKTVLSLSASGMHHLET 209 (250)
T ss_dssp SCCEEEEEE-----CCSCGGGSHHHHHHTEE--EEEEEEEEESSHHHHHHHHHHSGGGTEEEEEE
T ss_pred cceeeeeee-----cCCchHHHHHHHHHhcC--CCceEEEEeCCcChHHHHHHHHHHCCCceeEE
Confidence 568999985 45666788999999999 56665543332111111222346789876554
|
| >d1nt2a_ c.66.1.3 (A:) Fibrillarin homologue {Archaeon Archaeoglobus fulgidus [TaxId: 2234]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Fibrillarin homologue domain: Fibrillarin homologue species: Archaeon Archaeoglobus fulgidus [TaxId: 2234]
Probab=99.37 E-value=1e-11 Score=100.30 Aligned_cols=148 Identities=14% Similarity=0.095 Sum_probs=97.4
Q ss_pred ceEEeccHH-HHHHHHHhc--cCCCCCCeEEEecCCCCHHHHHHHHh-C-CEEEEEcCCCcHHHHHHHHHHHHHcCCceE
Q 026274 48 GLFVWPCSV-ILAEYVWQQ--RYRFSGANVVELGAGTSLPGLVAAKV-G-SNVTLTDDSNRIEVLKNMRRVCEMNKLNCR 122 (241)
Q Consensus 48 g~~~W~~s~-~L~~~l~~~--~~~~~~~~VLElGcGtGl~sl~la~~-g-~~V~~tD~~~~~~~l~~~~~n~~~n~~~~~ 122 (241)
|.+.|+.-. .|+..+... ....+|.+|||||||+|.....+|+. + .+|+++|+++ .|++.++++++..+ ++.
T Consensus 31 ~~r~w~p~rsklaa~i~~g~~l~lkpg~~VLDlGcG~G~~~~~la~~v~~g~V~gvDis~--~~i~~a~~~a~~~~-ni~ 107 (209)
T d1nt2a_ 31 GYREWVPWRSKLAAMILKGHRLKLRGDERVLYLGAASGTTVSHLADIVDEGIIYAVEYSA--KPFEKLLELVRERN-NII 107 (209)
T ss_dssp TEEECCGGGCHHHHHHHTSCCCCCCSSCEEEEETCTTSHHHHHHHHHTTTSEEEEECCCH--HHHHHHHHHHHHCS-SEE
T ss_pred ceeeeCCcchHHHHHHhccccCCCCCCCEEEEeCCcCCHHHHHHHHhccCCeEEEEeCCH--HHHHHHHHHhhccC-Cce
Confidence 468888553 555666543 34457899999999999999999986 3 3899999995 79999999887654 555
Q ss_pred EEEeecCCCCcCc-CCCCCcEEEEcCCcCCCccHHHHHHHHHHHhhcCCCeEEEEEeeccC-----c-hhHHHHHH--HH
Q 026274 123 VMGLTWGFLDASI-FDLNPNIILGADVFYDASAFDDLFATITYLLQSSPGSVFITTYHNRS-----G-HHLIEFLM--VK 193 (241)
Q Consensus 123 ~~~l~w~~~~~~~-~~~~fDlIl~~dvly~~~~~~~ll~~~~~lL~~~~~~~~~~~~~~r~-----~-~~~~~~~~--~~ 193 (241)
+...+........ ....+|+|+. | +++....+.+++.+.+.|+ +||.+++....+. . ...+.... -+
T Consensus 108 ~i~~d~~~~~~~~~~~~~vd~v~~-~-~~~~~~~~~~l~~~~~~Lk--pgG~l~i~~~~~~~d~~~~~~~~~~~~~~~l~ 183 (209)
T d1nt2a_ 108 PLLFDASKPWKYSGIVEKVDLIYQ-D-IAQKNQIEILKANAEFFLK--EKGEVVIMVKARSIDSTAEPEEVFKSVLKEME 183 (209)
T ss_dssp EECSCTTCGGGTTTTCCCEEEEEE-C-CCSTTHHHHHHHHHHHHEE--EEEEEEEEEEHHHHCTTSCHHHHHHHHHHHHH
T ss_pred EEEeeccCccccccccceEEEEEe-c-ccChhhHHHHHHHHHHHhc--cCCeEEEEEEccccCCCCCHHHHHHHHHHHHH
Confidence 5555544432211 1124555543 3 6667788899999999999 5666665543221 1 12222222 24
Q ss_pred cCCEEEEEe
Q 026274 194 WGLKCVKLV 202 (241)
Q Consensus 194 ~g~~~~~i~ 202 (241)
.||+.....
T Consensus 184 ~gf~i~E~i 192 (209)
T d1nt2a_ 184 GDFKIVKHG 192 (209)
T ss_dssp TTSEEEEEE
T ss_pred cCCEEEEEE
Confidence 699988763
|
| >d2igta1 c.66.1.51 (A:1-309) Putative methyltransferase Atu0340 {Agrobacterium tumefaciens [TaxId: 358]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: hypothetical RNA methyltransferase domain: Putative methyltransferase Atu0340 species: Agrobacterium tumefaciens [TaxId: 358]
Probab=99.37 E-value=3.6e-12 Score=108.58 Aligned_cols=152 Identities=17% Similarity=0.112 Sum_probs=102.3
Q ss_pred eEEEEeccCcCCcceEEeccHHHHHHHHHhc-cCCCCCCeEEEecCCCCHHHHHHHHhCCEEEEEcCCCcHHHHHHHHHH
Q 026274 35 FSIAIIENMKEEYGLFVWPCSVILAEYVWQQ-RYRFSGANVVELGAGTSLPGLVAAKVGSNVTLTDDSNRIEVLKNMRRV 113 (241)
Q Consensus 35 ~~i~i~~~~~~~~g~~~W~~s~~L~~~l~~~-~~~~~~~~VLElGcGtGl~sl~la~~g~~V~~tD~~~~~~~l~~~~~n 113 (241)
+...+.-.....+|.. ..-...=+|+... ....++++||||+||||.+|+.+++.|++|+++|.|+ .+++.+++|
T Consensus 98 l~f~v~~~~~~~tG~f--~dqr~nr~~~~~~~~~~~~~~rVLdlf~~tG~~sl~aa~~GA~V~~VD~s~--~al~~a~~N 173 (309)
T d2igta1 98 VEFLGRFTAFRHVGVF--PEQIVHWEWLKNAVETADRPLKVLNLFGYTGVASLVAAAAGAEVTHVDASK--KAIGWAKEN 173 (309)
T ss_dssp EEEEEECCSSSCCSCC--GGGHHHHHHHHHHHHHSSSCCEEEEETCTTCHHHHHHHHTTCEEEEECSCH--HHHHHHHHH
T ss_pred EEEEEeccCCCccccc--cchhHHHHHHHHHHhhccCCCeEEEecCCCcHHHHHHHhCCCeEEEEeChH--HHHHHHHHh
Confidence 5555555555566653 2222222333221 1234688999999999999999999999999999995 699999999
Q ss_pred HHHcCCc---eEEEEeecCCCCcC--cCCCCCcEEEEcCCcCCC----------ccHHHHHHHHHHHhhcCCCeEEEEEe
Q 026274 114 CEMNKLN---CRVMGLTWGFLDAS--IFDLNPNIILGADVFYDA----------SAFDDLFATITYLLQSSPGSVFITTY 178 (241)
Q Consensus 114 ~~~n~~~---~~~~~l~w~~~~~~--~~~~~fDlIl~~dvly~~----------~~~~~ll~~~~~lL~~~~~~~~~~~~ 178 (241)
++.|++. +++...|..+.... ....+||+|++.++-|-. .+...++..+..+|++++..+++.++
T Consensus 174 ~~ln~~~~~~~~~i~~D~~~~l~~~~~~~~~fD~IilDPP~f~~~~~~~~~~~~~~~~~l~~~~~~ll~~~g~~ll~t~~ 253 (309)
T d2igta1 174 QVLAGLEQAPIRWICEDAMKFIQREERRGSTYDIILTDPPKFGRGTHGEVWQLFDHLPLMLDICREILSPKALGLVLTAY 253 (309)
T ss_dssp HHHHTCTTSCEEEECSCHHHHHHHHHHHTCCBSEEEECCCSEEECTTCCEEEHHHHHHHHHHHHHHTBCTTCCEEEEEEC
T ss_pred hhhhcccCCcEEEEeCCHHHhHHHHhhcCCCCCEEEECCCcccccccchhHHHHHHHHHHHHHHHHhcCCCCCEEEEecC
Confidence 9999874 56665554332211 123589999987776532 24567888889999866555666666
Q ss_pred eccCchhHHHHH
Q 026274 179 HNRSGHHLIEFL 190 (241)
Q Consensus 179 ~~r~~~~~~~~~ 190 (241)
..+.....+..+
T Consensus 254 s~~~s~~~~~~~ 265 (309)
T d2igta1 254 SIRASFYSMHEL 265 (309)
T ss_dssp CTTSCHHHHHHH
T ss_pred CCCCCHHHHHHH
Confidence 655555444444
|
| >d2h00a1 c.66.1.54 (A:5-254) Methyltransferase 10 domain containing protein METT10D {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Methyltransferase 10 domain domain: Methyltransferase 10 domain containing protein METT10D species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.35 E-value=2.2e-11 Score=100.94 Aligned_cols=80 Identities=14% Similarity=0.149 Sum_probs=62.9
Q ss_pred CCCeEEEecCCCCHHHHHHHHh--CCEEEEEcCCCcHHHHHHHHHHHHHcCCc--eEEEEeecCCCCc-C---cCCCCCc
Q 026274 70 SGANVVELGAGTSLPGLVAAKV--GSNVTLTDDSNRIEVLKNMRRVCEMNKLN--CRVMGLTWGFLDA-S---IFDLNPN 141 (241)
Q Consensus 70 ~~~~VLElGcGtGl~sl~la~~--g~~V~~tD~~~~~~~l~~~~~n~~~n~~~--~~~~~l~w~~~~~-~---~~~~~fD 141 (241)
+..++||||||+|.+++.+++. +.+++++|+++ ++++.+++|++.|++. +.+...+|..... . ....+||
T Consensus 61 ~~~~~LDiGtGsg~I~~~l~~~~~~~~~~~~Di~~--~al~~A~~N~~~n~l~~~~~~~~~~~~~~~~~~~~~~~~~~fD 138 (250)
T d2h00a1 61 TLRRGIDIGTGASCIYPLLGATLNGWYFLATEVDD--MCFNYAKKNVEQNNLSDLIKVVKVPQKTLLMDALKEESEIIYD 138 (250)
T ss_dssp CCCEEEEESCTTTTHHHHHHHHHHCCEEEEEESCH--HHHHHHHHHHHHTTCTTTEEEEECCTTCSSTTTSTTCCSCCBS
T ss_pred ccceEEEeCCCchHHHHHHHHhCCCccccceecCH--HHHHHHHHHHHHhCCCcceeeeeeccHHhhhhhhhhcccCcee
Confidence 4568999999999999999886 67999999995 7999999999999875 4445555544321 1 1235799
Q ss_pred EEEEcCCcCC
Q 026274 142 IILGADVFYD 151 (241)
Q Consensus 142 lIl~~dvly~ 151 (241)
+|++++++|.
T Consensus 139 ~ivsNPPY~~ 148 (250)
T d2h00a1 139 FCMCNPPFFA 148 (250)
T ss_dssp EEEECCCCC-
T ss_pred EEEecCcccc
Confidence 9999999985
|
| >d1uwva2 c.66.1.40 (A:75-432) rRNA (Uracil-5-)-methyltransferase RumA, catalytic domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: (Uracil-5-)-methyltransferase domain: rRNA (Uracil-5-)-methyltransferase RumA, catalytic domain species: Escherichia coli [TaxId: 562]
Probab=99.34 E-value=7.5e-12 Score=108.61 Aligned_cols=153 Identities=14% Similarity=0.041 Sum_probs=111.2
Q ss_pred eccHHHHHHHHHhccCCCCCCeEEEecCCCCHHHHHHHHhCCEEEEEcCCCcHHHHHHHHHHHHHcCC-ceEEEEeecCC
Q 026274 52 WPCSVILAEYVWQQRYRFSGANVVELGAGTSLPGLVAAKVGSNVTLTDDSNRIEVLKNMRRVCEMNKL-NCRVMGLTWGF 130 (241)
Q Consensus 52 W~~s~~L~~~l~~~~~~~~~~~VLElGcGtGl~sl~la~~g~~V~~tD~~~~~~~l~~~~~n~~~n~~-~~~~~~l~w~~ 130 (241)
-..+..|.+.+.+.....++.+||||.||+|.+|+.+|+.+.+|+++|.++ ++++.+++|++.|++ ++.+...+-.+
T Consensus 194 ~~~~e~l~~~v~~~~~~~~~~~vlDLycG~G~fsl~La~~~~~V~gvE~~~--~ai~~A~~na~~n~i~n~~~~~~~~~~ 271 (358)
T d1uwva2 194 AGVNQKMVARALEWLDVQPEDRVLDLFCGMGNFTLPLATQAASVVGVEGVP--ALVEKGQQNARLNGLQNVTFYHENLEE 271 (358)
T ss_dssp HHHHHHHHHHHHHHHTCCTTCEEEEESCTTTTTHHHHHTTSSEEEEEESCH--HHHHHHHHHHHHTTCCSEEEEECCTTS
T ss_pred hhhhhHHHHHHHHhhccCCCceEEEecccccccchhccccccEEEeccCcH--HHHHHHHHhHHhcccccceeeecchhh
Confidence 355666777766655566778999999999999999999999999999995 799999999999998 46777665544
Q ss_pred CCcCc--CCCCCcEEEEcCCcCCCccHHHHHHHHHHHhhcCCCeEEEEEeeccCchhHHHHHHHHcCCEEEEE--ecCCC
Q 026274 131 LDASI--FDLNPNIILGADVFYDASAFDDLFATITYLLQSSPGSVFITTYHNRSGHHLIEFLMVKWGLKCVKL--VDGFS 206 (241)
Q Consensus 131 ~~~~~--~~~~fDlIl~~dvly~~~~~~~ll~~~~~lL~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~i--~~~~~ 206 (241)
..... ...++|+|+..++--- ....++.+.++ .+..++|+++.+.........+ .+.||++..+ .|.|+
T Consensus 272 ~~~~~~~~~~~~d~vilDPPR~G---~~~~~~~l~~~---~~~~ivYVSCnp~TlaRDl~~l-~~~gy~l~~i~~~D~FP 344 (358)
T d1uwva2 272 DVTKQPWAKNGFDKVLLDPARAG---AAGVMQQIIKL---EPIRIVYVSCNPATLARDSEAL-LKAGYTIARLAMLDMFP 344 (358)
T ss_dssp CCSSSGGGTTCCSEEEECCCTTC---CHHHHHHHHHH---CCSEEEEEESCHHHHHHHHHHH-HHTTCEEEEEEEECCST
T ss_pred hhhhhhhhhccCceEEeCCCCcc---HHHHHHHHHHc---CCCEEEEEeCCHHHHHHHHHHH-HHCCCeEeEEEEEecCC
Confidence 33211 2347999987655443 23355555443 5778999998765554444444 3568888887 88888
Q ss_pred CCCcccc
Q 026274 207 FLPHYKA 213 (241)
Q Consensus 207 ~~p~~~~ 213 (241)
.++|.+.
T Consensus 345 ~T~HvE~ 351 (358)
T d1uwva2 345 HTGHLES 351 (358)
T ss_dssp TSSCCEE
T ss_pred CCccEEE
Confidence 8877754
|
| >d2fpoa1 c.66.1.46 (A:10-192) Methylase YhhF {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: YhhF-like domain: Methylase YhhF species: Escherichia coli [TaxId: 562]
Probab=99.32 E-value=3.2e-12 Score=101.23 Aligned_cols=108 Identities=16% Similarity=0.100 Sum_probs=82.2
Q ss_pred CCCCCeEEEecCCCCHHHHHHHHhCC-EEEEEcCCCcHHHHHHHHHHHHHcCC-ceEEEEeecCCCCcCcCCCCCcEEEE
Q 026274 68 RFSGANVVELGAGTSLPGLVAAKVGS-NVTLTDDSNRIEVLKNMRRVCEMNKL-NCRVMGLTWGFLDASIFDLNPNIILG 145 (241)
Q Consensus 68 ~~~~~~VLElGcGtGl~sl~la~~g~-~V~~tD~~~~~~~l~~~~~n~~~n~~-~~~~~~l~w~~~~~~~~~~~fDlIl~ 145 (241)
...+++||||+||||.+|+.++++|+ +|+++|.++ ++++.+++|++.++. +..+...|..+... ....+||+|++
T Consensus 41 ~~~~~~vLDlfaGsG~~giealsrGa~~v~~VE~~~--~a~~~~k~N~~~~~~~~~~ii~~d~~~~l~-~~~~~fDlIf~ 117 (183)
T d2fpoa1 41 VIVDAQCLDCFAGSGALGLEALSRYAAGATLIEMDR--AVSQQLIKNLATLKAGNARVVNSNAMSFLA-QKGTPHNIVFV 117 (183)
T ss_dssp HHTTCEEEETTCTTCHHHHHHHHTTCSEEEEECSCH--HHHHHHHHHHHHTTCCSEEEECSCHHHHHS-SCCCCEEEEEE
T ss_pred ccchhhhhhhhccccceeeeEEecCcceeEEEEEee--chhhHHHHHHhhccccceeeeeeccccccc-ccccccCEEEE
Confidence 35788999999999999999999999 799999995 799999999988765 44554444333222 23458999997
Q ss_pred cCCcCCCccHHHHHHHHHH--HhhcCCCeEEEEEeecc
Q 026274 146 ADVFYDASAFDDLFATITY--LLQSSPGSVFITTYHNR 181 (241)
Q Consensus 146 ~dvly~~~~~~~ll~~~~~--lL~~~~~~~~~~~~~~r 181 (241)
.++ |.....+.++..+.+ +|+ +++++++.++.+
T Consensus 118 DPP-Y~~~~~~~~l~~l~~~~~L~--~~~iIiiE~~~~ 152 (183)
T d2fpoa1 118 DPP-FRRGLLEETINLLEDNGWLA--DEALIYVESEVE 152 (183)
T ss_dssp CCS-SSTTTHHHHHHHHHHTTCEE--EEEEEEEEEEGG
T ss_pred cCc-cccchHHHHHHHHHHCCCCC--CCeEEEEEecCc
Confidence 554 777788888888876 465 678888876543
|
| >d2g72a1 c.66.1.15 (A:18-280) Phenylethanolamine N-methyltransferase, PNMTase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Arylamine N-methyltransferase domain: Phenylethanolamine N-methyltransferase, PNMTase species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.31 E-value=2.7e-12 Score=107.18 Aligned_cols=131 Identities=21% Similarity=0.218 Sum_probs=88.4
Q ss_pred CCCCCCeEEEecCCCCHHHHHHHH-hCCEEEEEcCCCcHHHHHHHHHHHHHcCCc-------------------------
Q 026274 67 YRFSGANVVELGAGTSLPGLVAAK-VGSNVTLTDDSNRIEVLKNMRRVCEMNKLN------------------------- 120 (241)
Q Consensus 67 ~~~~~~~VLElGcGtGl~sl~la~-~g~~V~~tD~~~~~~~l~~~~~n~~~n~~~------------------------- 120 (241)
...+|.+|||+|||+|+.++..+. .+.+|+++|+++ .|++.+++++......
T Consensus 51 g~~~g~~vLDiGcG~g~~~~~~~~~~~~~v~~~D~S~--~~i~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~ 128 (263)
T d2g72a1 51 GEVSGRTLIDIGSGPTVYQLLSACSHFEDITMTDFLE--VNRQELGRWLQEEPGAFNWSMYSQHACLIEGKGECWQDKER 128 (263)
T ss_dssp SCSCCSEEEEETCTTCCGGGTTGGGGCSEEEEECSCH--HHHHHHHHHHTTCTTCCCCHHHHHHHHHHHCSCCCHHHHHH
T ss_pred CCCCCcEEEEeccCCCHHHHHHhcccCCeEEEEeCCH--HHHHHHHHHHhcCcccccchhhhhhhhhhccccchhhhhHH
Confidence 456889999999999988765554 456899999995 6999998876543211
Q ss_pred ---eEE-EEeecC--CCC----cCcCCCCCcEEEEcCCcCCC----ccHHHHHHHHHHHhhcCCCeEEEEEeec------
Q 026274 121 ---CRV-MGLTWG--FLD----ASIFDLNPNIILGADVFYDA----SAFDDLFATITYLLQSSPGSVFITTYHN------ 180 (241)
Q Consensus 121 ---~~~-~~l~w~--~~~----~~~~~~~fDlIl~~dvly~~----~~~~~ll~~~~~lL~~~~~~~~~~~~~~------ 180 (241)
..+ ..+.|. ... ....+.+||+|++.-|+.+. ..+..+++.+.++|| |||.+++....
T Consensus 129 ~~~~~~~~~~~~Dv~~~~~~~~~~~~~~~fD~V~~~~~l~~i~~~~~~~~~~l~~~~~~Lk--PGG~li~~~~~~~~~~~ 206 (263)
T d2g72a1 129 QLRARVKRVLPIDVHQPQPLGAGSPAPLPADALVSAFCLEAVSPDLASFQRALDHITTLLR--PGGHLLLIGALEESWYL 206 (263)
T ss_dssp HHHHHEEEEECCCTTSSSTTCSSCSSCSSEEEEEEESCHHHHCSSHHHHHHHHHHHHTTEE--EEEEEEEEEEESCCEEE
T ss_pred HhhhhhhccccccccCCCccccCCcCcCccCeeeeHHHHHHHccCHHHHHHHHHHHHHHcC--CCCEEEEecccCCcccc
Confidence 011 112221 111 11223479999999999774 367888999999999 56665543111
Q ss_pred ---------cCchhHHHHHHHHcCCEEEEE
Q 026274 181 ---------RSGHHLIEFLMVKWGLKCVKL 201 (241)
Q Consensus 181 ---------r~~~~~~~~~~~~~g~~~~~i 201 (241)
..+.+.+..++.+.||++..+
T Consensus 207 ~~~~~~~~~~~t~e~v~~~l~~aGf~v~~~ 236 (263)
T d2g72a1 207 AGEARLTVVPVSEEEVREALVRSGYKVRDL 236 (263)
T ss_dssp ETTEEEECCCCCHHHHHHHHHHTTEEEEEE
T ss_pred cCCcccccCCCCHHHHHHHHHHCCCeEEEE
Confidence 124456677789999998775
|
| >d1wxxa2 c.66.1.51 (A:65-382) Hypothetical protein TTHA1280, middle and C-terminal domains {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: hypothetical RNA methyltransferase domain: Hypothetical protein TTHA1280, middle and C-terminal domains species: Thermus thermophilus [TaxId: 274]
Probab=99.29 E-value=1.3e-11 Score=105.85 Aligned_cols=129 Identities=16% Similarity=0.089 Sum_probs=90.3
Q ss_pred CCCCeEEEecCCCCHHHHHHHHhCCEEEEEcCCCcHHHHHHHHHHHHHcCC-ceEEEEeecCCCCc--CcCCCCCcEEEE
Q 026274 69 FSGANVVELGAGTSLPGLVAAKVGSNVTLTDDSNRIEVLKNMRRVCEMNKL-NCRVMGLTWGFLDA--SIFDLNPNIILG 145 (241)
Q Consensus 69 ~~~~~VLElGcGtGl~sl~la~~g~~V~~tD~~~~~~~l~~~~~n~~~n~~-~~~~~~l~w~~~~~--~~~~~~fDlIl~ 145 (241)
.+|++|||++||+|..++.+|+.+++|+++|+|+ .+++.+++|++.|++ ++++...|..+... .....+||+|++
T Consensus 144 ~~g~rVLDl~~gtG~~s~~~a~g~~~V~~vD~s~--~al~~a~~n~~~ngl~~~~~i~~d~~~~~~~~~~~~~~fD~Vi~ 221 (318)
T d1wxxa2 144 FRGERALDVFSYAGGFALHLALGFREVVAVDSSA--EALRRAEENARLNGLGNVRVLEANAFDLLRRLEKEGERFDLVVL 221 (318)
T ss_dssp CCEEEEEEETCTTTHHHHHHHHHEEEEEEEESCH--HHHHHHHHHHHHTTCTTEEEEESCHHHHHHHHHHTTCCEEEEEE
T ss_pred hCCCeeeccCCCCcHHHHHHHhcCCcEEeecchH--HHHHHHHHHHHHcCCCCcceeeccHHHHhhhhHhhhcCCCEEEE
Confidence 4789999999999999999998777999999995 799999999999998 47777766544321 122458999998
Q ss_pred cCCcCCCc---------cHHHHHHHHHHHhhcCCCeEEEEE-eeccCchhHHHHH----HHHcCCEEEEE
Q 026274 146 ADVFYDAS---------AFDDLFATITYLLQSSPGSVFITT-YHNRSGHHLIEFL----MVKWGLKCVKL 201 (241)
Q Consensus 146 ~dvly~~~---------~~~~ll~~~~~lL~~~~~~~~~~~-~~~r~~~~~~~~~----~~~~g~~~~~i 201 (241)
..+.+... ....++....++|+ |||.++++ +...-....+..+ ....|-+...+
T Consensus 222 DpP~~~~~~~~~~~~~~~~~~l~~~a~~lLk--pGG~Lv~~scs~~~~~~~f~~~v~~a~~~a~~~~~~~ 289 (318)
T d1wxxa2 222 DPPAFAKGKKDVERAYRAYKEVNLRAIKLLK--EGGILATASCSHHMTEPLFYAMVAEAAQDAHRLLRVV 289 (318)
T ss_dssp CCCCSCCSTTSHHHHHHHHHHHHHHHHHTEE--EEEEEEEEECCTTSCHHHHHHHHHHHHHHTTCCEEEE
T ss_pred cCCccccchHHHHHHHHHHHHHHHHHHHHcC--CCCEEEEEeCCcccCHHHHHHHHHHHHHHcCCCEEEE
Confidence 87765432 34567778888888 56655544 3333333333332 34556554444
|
| >d1nv8a_ c.66.1.30 (A:) N5-glutamine methyltransferase, HemK {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: N5-glutamine methyltransferase, HemK domain: N5-glutamine methyltransferase, HemK species: Thermotoga maritima [TaxId: 2336]
Probab=99.29 E-value=1.9e-11 Score=102.39 Aligned_cols=154 Identities=14% Similarity=0.107 Sum_probs=102.5
Q ss_pred ccHHHHHHHHHhccCCCCCCeEEEecCCCCHHHHHHHHhC-CEEEEEcCCCcHHHHHHHHHHHHHcCCc--eEEEEeecC
Q 026274 53 PCSVILAEYVWQQRYRFSGANVVELGAGTSLPGLVAAKVG-SNVTLTDDSNRIEVLKNMRRVCEMNKLN--CRVMGLTWG 129 (241)
Q Consensus 53 ~~s~~L~~~l~~~~~~~~~~~VLElGcGtGl~sl~la~~g-~~V~~tD~~~~~~~l~~~~~n~~~n~~~--~~~~~l~w~ 129 (241)
|.+..|.+++..........+++|+|||+|.+++.+++.. ++|+++|+|+ ++++.+++|++.++.. +.+...+|.
T Consensus 93 peTE~lv~~~~~~~~~~~~~~vld~g~GsG~i~~~la~~~~~~v~a~Dis~--~Al~~A~~Na~~~~~~~~~~i~~~~~~ 170 (271)
T d1nv8a_ 93 PETEELVELALELIRKYGIKTVADIGTGSGAIGVSVAKFSDAIVFATDVSS--KAVEIARKNAERHGVSDRFFVRKGEFL 170 (271)
T ss_dssp TTHHHHHHHHHHHHHHHTCCEEEEESCTTSHHHHHHHHHSSCEEEEEESCH--HHHHHHHHHHHHTTCTTSEEEEESSTT
T ss_pred hhhhhhhhhhhhhhccccccEEEEeeeeeehhhhhhhhcccceeeechhhh--hHHHHHHHHHHHcCCCceeEEeecccc
Confidence 4566777776654433345689999999999999998764 5999999995 7999999999999884 455666776
Q ss_pred CCCcCcCCCCCcEEEEcCCcCCCc--------------------cHHHHHHHHHHHhhcCCCeEEEEEeeccCchhHHHH
Q 026274 130 FLDASIFDLNPNIILGADVFYDAS--------------------AFDDLFATITYLLQSSPGSVFITTYHNRSGHHLIEF 189 (241)
Q Consensus 130 ~~~~~~~~~~fDlIl~~dvly~~~--------------------~~~~ll~~~~~lL~~~~~~~~~~~~~~r~~~~~~~~ 189 (241)
+.... ...+||+|+++++.-... -+.-+-+-+.++|+ ++|.+++.+...+. ..+..
T Consensus 171 ~~~~~-~~~~fDlIVsNPPYI~~~~~l~~~~~~EP~~AL~gg~dGl~~~r~i~~~~L~--~~G~l~~Eig~~Q~-~~v~~ 246 (271)
T d1nv8a_ 171 EPFKE-KFASIEMILSNPPYVKSSAHLPKDVLFEPPEALFGGEDGLDFYREFFGRYDT--SGKIVLMEIGEDQV-EELKK 246 (271)
T ss_dssp GGGGG-GTTTCCEEEECCCCBCGGGSCTTSCCCSCHHHHBCTTTSCHHHHHHHHHCCC--TTCEEEEECCTTCH-HHHTT
T ss_pred ccccc-ccCcccEEEEcccccCcccccceeeeeccccccccccchHHHHHHHHHHhcC--CCCEEEEEECHHHH-HHHHH
Confidence 54322 235899999997643211 12222233566776 77888887655433 33444
Q ss_pred HHHHcCCEEEEEecCCCCCCcccccccCCCeEEEEEEec
Q 026274 190 LMVKWGLKCVKLVDGFSFLPHYKARELNGNIQLAEIVLN 228 (241)
Q Consensus 190 ~~~~~g~~~~~i~~~~~~~p~~~~~~~~~~~~l~~i~~~ 228 (241)
++++.||. ..+.++-.++.++|+
T Consensus 247 l~~~~g~~----------------kDl~g~~R~~~~~k~ 269 (271)
T d1nv8a_ 247 IVSDTVFL----------------KDSAGKYRFLLLNRR 269 (271)
T ss_dssp TSTTCEEE----------------ECTTSSEEEEEEECC
T ss_pred HHHhCCEE----------------eccCCCcEEEEEEEc
Confidence 45555541 355666666666543
|
| >d2fhpa1 c.66.1.46 (A:1-182) Putative methylase EF2452 {Enterococcus faecalis [TaxId: 1351]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: YhhF-like domain: Putative methylase EF2452 species: Enterococcus faecalis [TaxId: 1351]
Probab=99.27 E-value=6.2e-12 Score=99.51 Aligned_cols=109 Identities=16% Similarity=0.144 Sum_probs=82.6
Q ss_pred CCCCCeEEEecCCCCHHHHHHHHhCC-EEEEEcCCCcHHHHHHHHHHHHHcCC--ceEEEEeecCCCCcC--cCCCCCcE
Q 026274 68 RFSGANVVELGAGTSLPGLVAAKVGS-NVTLTDDSNRIEVLKNMRRVCEMNKL--NCRVMGLTWGFLDAS--IFDLNPNI 142 (241)
Q Consensus 68 ~~~~~~VLElGcGtGl~sl~la~~g~-~V~~tD~~~~~~~l~~~~~n~~~n~~--~~~~~~l~w~~~~~~--~~~~~fDl 142 (241)
...|++||||+||||.+|+.+++.|| +|+++|.++ ++++.+++|++.++. ++.+...|..+.... ....+||+
T Consensus 39 ~~~~~~vLDlfaGsG~~g~ea~srGa~~v~~ve~~~--~a~~~~~~N~~~~~~~~~~~i~~~D~~~~l~~~~~~~~~fDl 116 (182)
T d2fhpa1 39 YFDGGMALDLYSGSGGLAIEAVSRGMDKSICIEKNF--AALKVIKENIAITKEPEKFEVRKMDANRALEQFYEEKLQFDL 116 (182)
T ss_dssp CCSSCEEEETTCTTCHHHHHHHHTTCSEEEEEESCH--HHHHHHHHHHHHHTCGGGEEEEESCHHHHHHHHHHTTCCEEE
T ss_pred hcCCCEEEEcccccccccceeeecchhHHHHHHHHH--HHHHHHHHHhhhhhcccccccccccchhhhhhhcccCCCcce
Confidence 46789999999999999999999999 799999995 799999999998876 455665554332211 12348999
Q ss_pred EEEcCCcCCCccHHHHHHHHHH--HhhcCCCeEEEEEeecc
Q 026274 143 ILGADVFYDASAFDDLFATITY--LLQSSPGSVFITTYHNR 181 (241)
Q Consensus 143 Il~~dvly~~~~~~~ll~~~~~--lL~~~~~~~~~~~~~~r 181 (241)
|++ |+-|.......+++.+.. +|+ +++++++.++.+
T Consensus 117 Ifl-DPPY~~~~~~~~l~~i~~~~~L~--~~giIi~E~~~~ 154 (182)
T d2fhpa1 117 VLL-DPPYAKQEIVSQLEKMLERQLLT--NEAVIVCETDKT 154 (182)
T ss_dssp EEE-CCCGGGCCHHHHHHHHHHTTCEE--EEEEEEEEEETT
T ss_pred EEe-chhhhhhHHHHHHHHHHHCCCCC--CCEEEEEEcCCC
Confidence 986 445777777888887754 465 678888776543
|
| >d2fcaa1 c.66.1.53 (A:10-213) tRNA (guanine-N(7)-)-methyltransferase TrmB {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: TrmB-like domain: tRNA (guanine-N(7)-)-methyltransferase TrmB species: Bacillus subtilis [TaxId: 1423]
Probab=99.26 E-value=5.5e-11 Score=95.62 Aligned_cols=127 Identities=11% Similarity=0.001 Sum_probs=88.6
Q ss_pred CCeEEEecCCCCHHHHHHHHhC--CEEEEEcCCCcHHHHHHHHHHHHHcCC-ceEEEEeecCCCCcCcCCCCCcEEEEcC
Q 026274 71 GANVVELGAGTSLPGLVAAKVG--SNVTLTDDSNRIEVLKNMRRVCEMNKL-NCRVMGLTWGFLDASIFDLNPNIILGAD 147 (241)
Q Consensus 71 ~~~VLElGcGtGl~sl~la~~g--~~V~~tD~~~~~~~l~~~~~n~~~n~~-~~~~~~l~w~~~~~~~~~~~fDlIl~~d 147 (241)
+..|||||||+|...+.+|+.. ..++|+|+++ .++..+.+++..+++ ++.+...|.........+.++|.|+..-
T Consensus 30 ~PlvLeIGcG~G~~~~~lA~~~p~~~~iGiD~~~--~~i~~a~~~~~~~~l~Nv~~~~~Da~~l~~~~~~~~~d~v~i~f 107 (204)
T d2fcaa1 30 NPIHIEVGTGKGQFISGMAKQNPDINYIGIELFK--SVIVTAVQKVKDSEAQNVKLLNIDADTLTDVFEPGEVKRVYLNF 107 (204)
T ss_dssp CCEEEEECCTTSHHHHHHHHHCTTSEEEEECSCH--HHHHHHHHHHHHSCCSSEEEECCCGGGHHHHCCTTSCCEEEEES
T ss_pred CceEEEEEecCcHHHHHHHHhCCCCcEEEeecch--HHHHHHHHHHHHHhccCchhcccchhhhhcccCchhhhcccccc
Confidence 3479999999999999999984 5899999995 699999999988887 5777776654433233456899887665
Q ss_pred CcCCCcc--------HHHHHHHHHHHhhcCCCeEEEEEeeccCchhHHHHHHHHcCCEEEEE
Q 026274 148 VFYDASA--------FDDLFATITYLLQSSPGSVFITTYHNRSGHHLIEFLMVKWGLKCVKL 201 (241)
Q Consensus 148 vly~~~~--------~~~ll~~~~~lL~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~i 201 (241)
+..++.. -..+++.++++|+ |||.+++................+.++.....
T Consensus 108 p~P~~k~~h~k~Rl~~~~~l~~~~r~Lk--pgG~l~i~TD~~~y~~~~~~~~~~~~~~~~~~ 167 (204)
T d2fcaa1 108 SDPWPKKRHEKRRLTYSHFLKKYEEVMG--KGGSIHFKTDNRGLFEYSLKSFSEYGLLLTYV 167 (204)
T ss_dssp CCCCCSGGGGGGSTTSHHHHHHHHHHHT--TSCEEEEEESCHHHHHHHHHHHHHHTCEEEEE
T ss_pred ccccchhhhcchhhhHHHHHHHHHHhCC--CCcEEEEEECChHHHHHHHHHHHHCCCccccC
Confidence 5544432 2589999999999 66776665433222233333345567655444
|
| >d1i9ga_ c.66.1.13 (A:) Probable methyltransferase Rv2118c {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: tRNA(1-methyladenosine) methyltransferase-like domain: Probable methyltransferase Rv2118c species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=99.25 E-value=1.8e-11 Score=102.10 Aligned_cols=127 Identities=20% Similarity=0.160 Sum_probs=88.6
Q ss_pred cCCCCCCeEEEecCCCCHHHHHHHHh-C--CEEEEEcCCCcHHHHHHHHHHHHHc--C--CceEEEEeecCCCCcCcCCC
Q 026274 66 RYRFSGANVVELGAGTSLPGLVAAKV-G--SNVTLTDDSNRIEVLKNMRRVCEMN--K--LNCRVMGLTWGFLDASIFDL 138 (241)
Q Consensus 66 ~~~~~~~~VLElGcGtGl~sl~la~~-g--~~V~~tD~~~~~~~l~~~~~n~~~n--~--~~~~~~~l~w~~~~~~~~~~ 138 (241)
....+|.+|||+|||+|.+++.+|+. | .+|++.|+++ ++++.+++|++.. . .++.+...|..+. +..+.
T Consensus 92 l~i~PG~~VLE~G~GsG~lt~~La~~vgp~G~V~~~d~~~--~~~~~Ar~n~~~~~~~~~~nv~~~~~d~~~~--~~~~~ 167 (264)
T d1i9ga_ 92 GDIFPGARVLEAGAGSGALTLSLLRAVGPAGQVISYEQRA--DHAEHARRNVSGCYGQPPDNWRLVVSDLADS--ELPDG 167 (264)
T ss_dssp TTCCTTCEEEEECCTTSHHHHHHHHHHCTTSEEEEECSCH--HHHHHHHHHHHHHHTSCCTTEEEECSCGGGC--CCCTT
T ss_pred hCCCCCCEEEecCcCCcHHHHHHHHhhCCCcEEEEecCCH--HHHHHHHHhhhhhccCCCceEEEEecccccc--cccCC
Confidence 34568899999999999999999986 4 3899999995 7999999998753 1 2455555444332 33456
Q ss_pred CCcEEEEcCCcCCCccHHHHHHHHHHHhhcCCCeEEEEEeecc-CchhHHHHHHHHcCCEEEEEec
Q 026274 139 NPNIILGADVFYDASAFDDLFATITYLLQSSPGSVFITTYHNR-SGHHLIEFLMVKWGLKCVKLVD 203 (241)
Q Consensus 139 ~fDlIl~~dvly~~~~~~~ll~~~~~lL~~~~~~~~~~~~~~r-~~~~~~~~~~~~~g~~~~~i~~ 203 (241)
.||.|+. +.+++...+..+.++|+ |||.+.+-.+.- +.....+.+..+.||......+
T Consensus 168 ~fDaV~l-----dlp~P~~~l~~~~~~Lk--pGG~lv~~~P~i~Qv~~~~~~l~~~~~f~~i~~~E 226 (264)
T d1i9ga_ 168 SVDRAVL-----DMLAPWEVLDAVSRLLV--AGGVLMVYVATVTQLSRIVEALRAKQCWTEPRAWE 226 (264)
T ss_dssp CEEEEEE-----ESSCGGGGHHHHHHHEE--EEEEEEEEESSHHHHHHHHHHHHHHSSBCCCEEEC
T ss_pred CcceEEE-----ecCCHHHHHHHHHhccC--CCCEEEEEeCccChHHHHHHHHHHcCCeecceEEE
Confidence 8999985 46777889999999999 555443322222 2234445555667786544433
|
| >d2frna1 c.66.1.47 (A:19-278) Hypothetical protein PH0793 {Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Met-10+ protein-like domain: Hypothetical protein PH0793 species: Pyrococcus horikoshii [TaxId: 53953]
Probab=99.25 E-value=3.8e-11 Score=100.03 Aligned_cols=122 Identities=15% Similarity=0.114 Sum_probs=87.0
Q ss_pred CCCCeEEEecCCCCHHHHHHHHhCC-EEEEEcCCCcHHHHHHHHHHHHHcCCc--eEEEEeecCCCCcCcCCCCCcEEEE
Q 026274 69 FSGANVVELGAGTSLPGLVAAKVGS-NVTLTDDSNRIEVLKNMRRVCEMNKLN--CRVMGLTWGFLDASIFDLNPNIILG 145 (241)
Q Consensus 69 ~~~~~VLElGcGtGl~sl~la~~g~-~V~~tD~~~~~~~l~~~~~n~~~n~~~--~~~~~l~w~~~~~~~~~~~fDlIl~ 145 (241)
.+|.+|||+|||+|.+|+.+|+.|+ +|+++|+++ ++++.+++|++.|++. +++...|..+.. ....||.|++
T Consensus 106 ~~g~~VlD~~aG~G~~~l~~a~~~~~~V~avd~n~--~a~~~~~~N~~~n~l~~~v~~~~~D~~~~~---~~~~~D~Ii~ 180 (260)
T d2frna1 106 KPDELVVDMFAGIGHLSLPIAVYGKAKVIAIEKDP--YTFKFLVENIHLNKVEDRMSAYNMDNRDFP---GENIADRILM 180 (260)
T ss_dssp CTTCEEEETTCTTTTTHHHHHHHTCCEEEEECCCH--HHHHHHHHHHHHTTCTTTEEEECSCTTTCC---CCSCEEEEEE
T ss_pred CCccEEEECcceEcHHHHHHHHhCCcEEEEecCCH--HHHHHHHHHHHHhCCCceEEEEEcchHHhc---cCCCCCEEEE
Confidence 4688999999999999999999985 999999995 7999999999999984 566666655432 2357999998
Q ss_pred cCCcCCCccHHHHHHHHHHHhhcCCCeEEEE-E--eeccC---chhHHHHHHHHcCCEEEEE
Q 026274 146 ADVFYDASAFDDLFATITYLLQSSPGSVFIT-T--YHNRS---GHHLIEFLMVKWGLKCVKL 201 (241)
Q Consensus 146 ~dvly~~~~~~~ll~~~~~lL~~~~~~~~~~-~--~~~r~---~~~~~~~~~~~~g~~~~~i 201 (241)
.++-+. ..+++...++++ +||++.+ . ..... ..+.+..++...|+++..+
T Consensus 181 ~~p~~~----~~~l~~a~~~l~--~gG~lh~~~~~~~~~~~~~~~e~~~~~~~~~g~~v~~~ 236 (260)
T d2frna1 181 GYVVRT----HEFIPKALSIAK--DGAIIHYHNTVPEKLMPREPFETFKRITKEYGYDVEKL 236 (260)
T ss_dssp CCCSSG----GGGHHHHHHHEE--EEEEEEEEEEEEGGGTTTTTHHHHHHHHHHTTCEEEEE
T ss_pred CCCCch----HHHHHHHHhhcC--CCCEEEEEeccccccchhhHHHHHHHHHHHcCCceEEE
Confidence 766443 345556667787 4565432 1 11111 1233445677889988765
|
| >d1dl5a1 c.66.1.7 (A:1-213) Protein-L-isoaspartyl O-methyltransferase {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Protein-L-isoaspartyl O-methyltransferase domain: Protein-L-isoaspartyl O-methyltransferase species: Thermotoga maritima [TaxId: 2336]
Probab=99.24 E-value=4.7e-11 Score=96.60 Aligned_cols=110 Identities=17% Similarity=0.097 Sum_probs=78.5
Q ss_pred HHHHHHHHhccCCCCCCeEEEecCCCCHHHHHHHHh-C--CEEEEEcCCCcHHHHHHHHHHHHHcCCc-eEEEEeecCCC
Q 026274 56 VILAEYVWQQRYRFSGANVVELGAGTSLPGLVAAKV-G--SNVTLTDDSNRIEVLKNMRRVCEMNKLN-CRVMGLTWGFL 131 (241)
Q Consensus 56 ~~L~~~l~~~~~~~~~~~VLElGcGtGl~sl~la~~-g--~~V~~tD~~~~~~~l~~~~~n~~~n~~~-~~~~~l~w~~~ 131 (241)
..++.. .+.....+|.+|||||||||..+..+|+. | .+|+++|+++ ++++.+++|++..+.. +.+...+..+.
T Consensus 62 ~~~a~~-l~~l~l~~g~~VLdiG~GtG~~s~~la~~~~~~g~V~~id~~~--~~~~~a~~~~~~~~~~n~~~~~~d~~~~ 138 (213)
T d1dl5a1 62 SLMALF-MEWVGLDKGMRVLEIGGGTGYNAAVMSRVVGEKGLVVSVEYSR--KICEIAKRNVERLGIENVIFVCGDGYYG 138 (213)
T ss_dssp HHHHHH-HHHTTCCTTCEEEEECCTTSHHHHHHHHHHCTTCEEEEEESCH--HHHHHHHHHHHHTTCCSEEEEESCGGGC
T ss_pred hhhHHH-HHhhhccccceEEEecCccchhHHHHHHHhCCCCcEEEeecch--hhHHHhhhhHhhhcccccccccCchHHc
Confidence 334444 44445678999999999999999999985 4 3899999995 7999999999887763 44443332221
Q ss_pred CcCcCCCCCcEEEEcCCcCCCccHHHHHHHHHHHhhcCCCeEEEEEe
Q 026274 132 DASIFDLNPNIILGADVFYDASAFDDLFATITYLLQSSPGSVFITTY 178 (241)
Q Consensus 132 ~~~~~~~~fDlIl~~dvly~~~~~~~ll~~~~~lL~~~~~~~~~~~~ 178 (241)
.....+||+|++...+++.+ +.+.+.|+ |||.++++.
T Consensus 139 --~~~~~~fD~I~~~~~~~~~p------~~l~~~Lk--pGG~lv~pv 175 (213)
T d1dl5a1 139 --VPEFSPYDVIFVTVGVDEVP------ETWFTQLK--EGGRVIVPI 175 (213)
T ss_dssp --CGGGCCEEEEEECSBBSCCC------HHHHHHEE--EEEEEEEEB
T ss_pred --cccccchhhhhhhccHHHhH------HHHHHhcC--CCcEEEEEE
Confidence 12235799999998887753 24566788 677777754
|
| >d1qzza2 c.66.1.12 (A:102-357) Aclacinomycin-10-hydroxylase RdmB {Streptomyces purpurascens [TaxId: 1924]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Plant O-methyltransferase, C-terminal domain domain: Aclacinomycin-10-hydroxylase RdmB species: Streptomyces purpurascens [TaxId: 1924]
Probab=99.23 E-value=2e-10 Score=95.22 Aligned_cols=98 Identities=16% Similarity=0.129 Sum_probs=75.3
Q ss_pred CCCeEEEecCCCCHHHHHHHHh--CCEEEEEcCCCcHHHHHHHHHHHHHcCCc--eEEEEeecCCCCcCcCCCCCcEEEE
Q 026274 70 SGANVVELGAGTSLPGLVAAKV--GSNVTLTDDSNRIEVLKNMRRVCEMNKLN--CRVMGLTWGFLDASIFDLNPNIILG 145 (241)
Q Consensus 70 ~~~~VLElGcGtGl~sl~la~~--g~~V~~tD~~~~~~~l~~~~~n~~~n~~~--~~~~~l~w~~~~~~~~~~~fDlIl~ 145 (241)
..++|||||||+|..+..+++. +.++++.|++ ++++.+++++...+.. +.+...+.. .+. +.+||+|++
T Consensus 81 ~~~~vlDvG~G~G~~~~~l~~~~P~~~~~~~Dlp---~~~~~a~~~~~~~~~~~ri~~~~~d~~---~~~-p~~~D~v~~ 153 (256)
T d1qzza2 81 AVRHVLDVGGGNGGMLAAIALRAPHLRGTLVELA---GPAERARRRFADAGLADRVTVAEGDFF---KPL-PVTADVVLL 153 (256)
T ss_dssp TCCEEEEETCTTSHHHHHHHHHCTTCEEEEEECH---HHHHHHHHHHHHTTCTTTEEEEECCTT---SCC-SCCEEEEEE
T ss_pred cCCEEEEECCCCCHHHHHHHHhhcCcEEEEecCh---HHHHHHHHHHhhcCCcceeeeeeeecc---ccc-cccchhhhc
Confidence 4578999999999999999998 4589999984 5899999998877764 555554433 222 346999999
Q ss_pred cCCcCCCcc--HHHHHHHHHHHhhcCCCeEEEE
Q 026274 146 ADVFYDASA--FDDLFATITYLLQSSPGSVFIT 176 (241)
Q Consensus 146 ~dvly~~~~--~~~ll~~~~~lL~~~~~~~~~~ 176 (241)
+.++++.++ ...+++.+.+.|+ |||.+++
T Consensus 154 ~~vLh~~~d~~~~~lL~~i~~~Lk--pgG~llI 184 (256)
T d1qzza2 154 SFVLLNWSDEDALTILRGCVRALE--PGGRLLV 184 (256)
T ss_dssp ESCGGGSCHHHHHHHHHHHHHHEE--EEEEEEE
T ss_pred cccccccCcHHHHHHHHHHHhhcC--CcceeEE
Confidence 999987654 4678999999998 5565444
|
| >d2as0a2 c.66.1.51 (A:73-396) Hypothetical protein PH1915, middle and C-terminal domains {Archaeon Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: hypothetical RNA methyltransferase domain: Hypothetical protein PH1915, middle and C-terminal domains species: Archaeon Pyrococcus horikoshii [TaxId: 53953]
Probab=99.22 E-value=1.7e-11 Score=105.27 Aligned_cols=128 Identities=14% Similarity=0.064 Sum_probs=87.4
Q ss_pred CCCeEEEecCCCCHHHHHHHHhCC-EEEEEcCCCcHHHHHHHHHHHHHcCCc--eEEEEeecCCCCc--CcCCCCCcEEE
Q 026274 70 SGANVVELGAGTSLPGLVAAKVGS-NVTLTDDSNRIEVLKNMRRVCEMNKLN--CRVMGLTWGFLDA--SIFDLNPNIIL 144 (241)
Q Consensus 70 ~~~~VLElGcGtGl~sl~la~~g~-~V~~tD~~~~~~~l~~~~~n~~~n~~~--~~~~~l~w~~~~~--~~~~~~fDlIl 144 (241)
+|++|||+|||+|..|+.+++.|+ +|+++|+++ .+++.+++|++.|++. +++...|..+... .....+||+|+
T Consensus 145 ~g~~VLDl~~g~G~~si~~a~~ga~~V~~vD~s~--~al~~a~~N~~~ngl~~~~~~~~~d~~~~~~~~~~~~~~fD~Vi 222 (324)
T d2as0a2 145 PGDRVLDVFTYTGGFAIHAAIAGADEVIGIDKSP--RAIETAKENAKLNGVEDRMKFIVGSAFEEMEKLQKKGEKFDIVV 222 (324)
T ss_dssp TTCEEEETTCTTTHHHHHHHHTTCSEEEEEESCH--HHHHHHHHHHHHTTCGGGEEEEESCHHHHHHHHHHTTCCEEEEE
T ss_pred CCCeeecccCcccchhhhhhhcCCcEEEeecCCH--HHHHHHHHHHHHcCCCccceeeechhhhhhHHHHhccCCCCchh
Confidence 588999999999999999999987 899999995 7999999999999984 5555544332211 11245899999
Q ss_pred EcCCcCCCc---------cHHHHHHHHHHHhhcCCCeEEEEEe-eccCchhHHHHH----HHHcCCEEEEE
Q 026274 145 GADVFYDAS---------AFDDLFATITYLLQSSPGSVFITTY-HNRSGHHLIEFL----MVKWGLKCVKL 201 (241)
Q Consensus 145 ~~dvly~~~---------~~~~ll~~~~~lL~~~~~~~~~~~~-~~r~~~~~~~~~----~~~~g~~~~~i 201 (241)
+..+.+... ....++....++|+ |||.++++. ...-..+.+... ..+.|-.+..+
T Consensus 223 ~DpP~~~~~~~~~~~~~~~y~~l~~~a~~ll~--pGG~lv~~s~s~~~~~~~f~~~v~~a~~~~gr~~~~~ 291 (324)
T d2as0a2 223 LDPPAFVQHEKDLKAGLRAYFNVNFAGLNLVK--DGGILVTCSCSQHVDLQMFKDMIIAAGAKAGKFLKML 291 (324)
T ss_dssp ECCCCSCSSGGGHHHHHHHHHHHHHHHHTTEE--EEEEEEEEECCTTSCHHHHHHHHHHHHHHTTEEEEES
T ss_pred cCCccccCCHHHHHHHHHHHHHHHHHHHHHcC--CCcEEEEEeCCccCCHHHHHHHHHHHHHHcCCeEEEe
Confidence 876655432 35567777778887 566655543 332232322222 34556555554
|
| >d2b78a2 c.66.1.51 (A:69-385) Hypothetical protein SMu776, middle and C-terminal domains {Streptococcus mutans [TaxId: 1309]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: hypothetical RNA methyltransferase domain: Hypothetical protein SMu776, middle and C-terminal domains species: Streptococcus mutans [TaxId: 1309]
Probab=99.22 E-value=4.8e-11 Score=102.19 Aligned_cols=129 Identities=16% Similarity=0.053 Sum_probs=90.5
Q ss_pred CCCCeEEEecCCCCHHHHHHHHhCC-EEEEEcCCCcHHHHHHHHHHHHHcCCc---eEEEEeecCCCCc--CcCCCCCcE
Q 026274 69 FSGANVVELGAGTSLPGLVAAKVGS-NVTLTDDSNRIEVLKNMRRVCEMNKLN---CRVMGLTWGFLDA--SIFDLNPNI 142 (241)
Q Consensus 69 ~~~~~VLElGcGtGl~sl~la~~g~-~V~~tD~~~~~~~l~~~~~n~~~n~~~---~~~~~l~w~~~~~--~~~~~~fDl 142 (241)
.+|++|||++||||..|+.+++.|+ +|+++|+++ .+++.+++|++.|++. +++...|..+... .....+||+
T Consensus 143 ~~g~~VLdlf~~~G~~sl~aa~~ga~~V~~vD~s~--~a~~~a~~N~~~n~l~~~~~~~i~~d~~~~l~~~~~~~~~fD~ 220 (317)
T d2b78a2 143 AAGKTVLNLFSYTAAFSVAAAMGGAMATTSVDLAK--RSRALSLAHFEANHLDMANHQLVVMDVFDYFKYARRHHLTYDI 220 (317)
T ss_dssp TBTCEEEEETCTTTHHHHHHHHTTBSEEEEEESCT--THHHHHHHHHHHTTCCCTTEEEEESCHHHHHHHHHHTTCCEEE
T ss_pred hCCCceeecCCCCcHHHHHHHhCCCceEEEecCCH--HHHHHHHHHHHHhcccCcceEEEEccHHHHHHHHHhhcCCCCE
Confidence 4689999999999999999999888 799999997 5999999999999873 5666655433221 112358999
Q ss_pred EEEcCCcCCC---------ccHHHHHHHHHHHhhcCCCeEEEEE-eeccCchhHHHHH----HHHcCCEEEEE
Q 026274 143 ILGADVFYDA---------SAFDDLFATITYLLQSSPGSVFITT-YHNRSGHHLIEFL----MVKWGLKCVKL 201 (241)
Q Consensus 143 Il~~dvly~~---------~~~~~ll~~~~~lL~~~~~~~~~~~-~~~r~~~~~~~~~----~~~~g~~~~~i 201 (241)
|+..++-+.. .++..|++...++|+ |||+++++ +........+... +.+.+.....+
T Consensus 221 Ii~DPP~f~~~~~~~~~~~~~~~~L~~~a~~ll~--pgG~l~~~scs~~~~~~~f~~~v~~a~~~~~~~~~~~ 291 (317)
T d2b78a2 221 IIIDPPSFARNKKEVFSVSKDYHKLIRQGLEILS--ENGLIIASTNAANMTVSQFKKQIEKGFGKQKHTYLDL 291 (317)
T ss_dssp EEECCCCC-----CCCCHHHHHHHHHHHHHHTEE--EEEEEEEEECCTTSCHHHHHHHHHHHHTTCCCEEEEE
T ss_pred EEEcChhhccchhHHHHHHHHHHHHHHHHHHHcC--CCCEEEEEeCCccCCHHHHHHHHHHHHHHcCCeEEEe
Confidence 9987776532 246678888999998 56665554 3333343333332 34556666555
|
| >d1yzha1 c.66.1.53 (A:8-211) tRNA (guanine-N(7)-)-methyltransferase TrmB {Streptococcus pneumoniae [TaxId: 1313]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: TrmB-like domain: tRNA (guanine-N(7)-)-methyltransferase TrmB species: Streptococcus pneumoniae [TaxId: 1313]
Probab=99.18 E-value=7.5e-10 Score=88.80 Aligned_cols=127 Identities=15% Similarity=0.008 Sum_probs=89.6
Q ss_pred CeEEEecCCCCHHHHHHHHhC--CEEEEEcCCCcHHHHHHHHHHHHHcCC-ceEEEEeecCCCCcCcCCCCCcEEEEcCC
Q 026274 72 ANVVELGAGTSLPGLVAAKVG--SNVTLTDDSNRIEVLKNMRRVCEMNKL-NCRVMGLTWGFLDASIFDLNPNIILGADV 148 (241)
Q Consensus 72 ~~VLElGcGtGl~sl~la~~g--~~V~~tD~~~~~~~l~~~~~n~~~n~~-~~~~~~l~w~~~~~~~~~~~fDlIl~~dv 148 (241)
..|||||||+|-..+.+|+.. ..++|+|+++ .++..+.+++..+++ ++.+...+..+......+.++|.|+..-+
T Consensus 33 plvLdIGcG~G~~~~~lA~~~p~~~~iGid~~~--~~v~~a~~~~~~~~l~Ni~~~~~da~~l~~~~~~~~~~~i~i~fP 110 (204)
T d1yzha1 33 PIHVEVGSGKGAFVSGMAKQNPDINYIGIDIQK--SVLSYALDKVLEVGVPNIKLLWVDGSDLTDYFEDGEIDRLYLNFS 110 (204)
T ss_dssp CEEEEESCTTSHHHHHHHHHCTTSEEEEEESCH--HHHHHHHHHHHHHCCSSEEEEECCSSCGGGTSCTTCCSEEEEESC
T ss_pred CeEEEEeccCCHHHHHHHHHCCCCceEEEeccH--HHHHHHHHhhhhhccccceeeecCHHHHhhhccCCceehhccccc
Confidence 469999999999999999974 4899999995 689988888888776 58888888766544444568998876544
Q ss_pred cCCCc--------cHHHHHHHHHHHhhcCCCeEEEEEeeccCchhHHHHHHHHcCCEEEEEe
Q 026274 149 FYDAS--------AFDDLFATITYLLQSSPGSVFITTYHNRSGHHLIEFLMVKWGLKCVKLV 202 (241)
Q Consensus 149 ly~~~--------~~~~ll~~~~~lL~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~i~ 202 (241)
-.++. .-..+++.+.++|+ |||.+++................+.++.....+
T Consensus 111 dPw~K~~h~krRl~~~~~l~~~~~~Lk--pgG~l~i~TD~~~Y~~~~le~~~~~~~~~~~~~ 170 (204)
T d1yzha1 111 DPWPKKRHEKRRLTYKTFLDTFKRILP--ENGEIHFKTDNRGLFEYSLVSFSQYGMKLNGVW 170 (204)
T ss_dssp CCCCSGGGGGGSTTSHHHHHHHHHHSC--TTCEEEEEESCHHHHHHHHHHHHHHTCEEEEEE
T ss_pred ccccchhhhhhhhhHHHHHHHHHHhCC--CCcEEEEEECCccHHHHHHHHHHHCCccccccc
Confidence 33332 13789999999998 667666654332222222233456677766553
|
| >d1vbfa_ c.66.1.7 (A:) Protein-L-isoaspartyl O-methyltransferase {Sulfolobus tokodaii [TaxId: 111955]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Protein-L-isoaspartyl O-methyltransferase domain: Protein-L-isoaspartyl O-methyltransferase species: Sulfolobus tokodaii [TaxId: 111955]
Probab=99.17 E-value=1.1e-10 Score=95.09 Aligned_cols=113 Identities=11% Similarity=0.057 Sum_probs=79.4
Q ss_pred cHHHHHHHHHhccCCCCCCeEEEecCCCCHHHHHHHHhCCEEEEEcCCCcHHHHHHHHHHHHHcCCceEEEEeecCCCCc
Q 026274 54 CSVILAEYVWQQRYRFSGANVVELGAGTSLPGLVAAKVGSNVTLTDDSNRIEVLKNMRRVCEMNKLNCRVMGLTWGFLDA 133 (241)
Q Consensus 54 ~s~~L~~~l~~~~~~~~~~~VLElGcGtGl~sl~la~~g~~V~~tD~~~~~~~l~~~~~n~~~n~~~~~~~~l~w~~~~~ 133 (241)
++..+..++.+.....++.+|||+|||||..+..+|+++.+|+++|+++ ++++.+++|.... .++.+...|......
T Consensus 54 ~~p~~~a~ml~~L~l~~g~~VLdIG~GsGy~ta~La~l~~~V~aiE~~~--~~~~~A~~~~~~~-~nv~~~~~d~~~g~~ 130 (224)
T d1vbfa_ 54 TALNLGIFMLDELDLHKGQKVLEIGTGIGYYTALIAEIVDKVVSVEINE--KMYNYASKLLSYY-NNIKLILGDGTLGYE 130 (224)
T ss_dssp CCHHHHHHHHHHTTCCTTCEEEEECCTTSHHHHHHHHHSSEEEEEESCH--HHHHHHHHHHTTC-SSEEEEESCGGGCCG
T ss_pred ehhhhHHHHHHHhhhcccceEEEecCCCCHHHHHHHHHhcccccccccH--HHHHHHHHHHhcc-cccccccCchhhcch
Confidence 3333434455555667889999999999999999999999999999995 6999998887643 466666554322211
Q ss_pred CcCCCCCcEEEEcCCcCCCccHHHHHHHHHHHhhcCCCeEEEEEee
Q 026274 134 SIFDLNPNIILGADVFYDASAFDDLFATITYLLQSSPGSVFITTYH 179 (241)
Q Consensus 134 ~~~~~~fDlIl~~dvly~~~~~~~ll~~~~~lL~~~~~~~~~~~~~ 179 (241)
...+||.|+.+-.+.+.+ +.+.+.|+ +||.+++...
T Consensus 131 --~~~pfD~Iiv~~a~~~ip------~~l~~qLk--~GGrLV~pvg 166 (224)
T d1vbfa_ 131 --EEKPYDRVVVWATAPTLL------CKPYEQLK--EGGIMILPIG 166 (224)
T ss_dssp --GGCCEEEEEESSBBSSCC------HHHHHTEE--EEEEEEEEEC
T ss_pred --hhhhHHHHHhhcchhhhh------HHHHHhcC--CCCEEEEEEc
Confidence 135799999887765532 34556787 6777766643
|
| >d1p91a_ c.66.1.33 (A:) rRNA methyltransferase RlmA {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: rRNA methyltransferase RlmA domain: rRNA methyltransferase RlmA species: Escherichia coli [TaxId: 562]
Probab=99.16 E-value=1.3e-10 Score=97.01 Aligned_cols=95 Identities=15% Similarity=0.072 Sum_probs=72.1
Q ss_pred CCCCeEEEecCCCCHHHHHHHHhC--CEEEEEcCCCcHHHHHHHHHHHHHcCCceEEEEeecCCCCcCcCCCCCcEEEEc
Q 026274 69 FSGANVVELGAGTSLPGLVAAKVG--SNVTLTDDSNRIEVLKNMRRVCEMNKLNCRVMGLTWGFLDASIFDLNPNIILGA 146 (241)
Q Consensus 69 ~~~~~VLElGcGtGl~sl~la~~g--~~V~~tD~~~~~~~l~~~~~n~~~n~~~~~~~~l~w~~~~~~~~~~~fDlIl~~ 146 (241)
.++.+|||+|||+|..+..+++.+ .+++++|+++ .|++.++++ ..++.+...+..+. +..+.+||+|++.
T Consensus 83 ~~~~~iLDiGcG~G~~~~~l~~~~~~~~~~giD~s~--~~~~~a~~~----~~~~~~~~~d~~~l--~~~~~sfD~v~~~ 154 (268)
T d1p91a_ 83 DKATAVLDIGCGEGYYTHAFADALPEITTFGLDVSK--VAIKAAAKR----YPQVTFCVASSHRL--PFSDTSMDAIIRI 154 (268)
T ss_dssp TTCCEEEEETCTTSTTHHHHHHTCTTSEEEEEESCH--HHHHHHHHH----CTTSEEEECCTTSC--SBCTTCEEEEEEE
T ss_pred CCCCEEEEeCCCCcHHHHHHHHHCCCCEEEEecchH--hhhhhhhcc----cccccceeeehhhc--cCCCCCEEEEeec
Confidence 467799999999999999999874 4899999995 688877653 34566766666553 4456789999987
Q ss_pred CCcCCCccHHHHHHHHHHHhhcCCCeEEEEEeec
Q 026274 147 DVFYDASAFDDLFATITYLLQSSPGSVFITTYHN 180 (241)
Q Consensus 147 dvly~~~~~~~ll~~~~~lL~~~~~~~~~~~~~~ 180 (241)
.+..+ ++.+.++|| |||.+++....
T Consensus 155 ~~~~~-------~~e~~rvLk--pgG~l~~~~p~ 179 (268)
T d1p91a_ 155 YAPCK-------AEELARVVK--PGGWVITATPG 179 (268)
T ss_dssp SCCCC-------HHHHHHHEE--EEEEEEEEEEC
T ss_pred CCHHH-------HHHHHHHhC--CCcEEEEEeeC
Confidence 76654 466889998 66766666543
|
| >d1g8aa_ c.66.1.3 (A:) Fibrillarin homologue {Archaeon Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Fibrillarin homologue domain: Fibrillarin homologue species: Archaeon Pyrococcus horikoshii [TaxId: 53953]
Probab=99.16 E-value=6.8e-10 Score=90.50 Aligned_cols=149 Identities=12% Similarity=0.094 Sum_probs=98.0
Q ss_pred cceEEeccHH-HHHHHHHhc---cCCCCCCeEEEecCCCCHHHHHHHHh-C--CEEEEEcCCCcHHHHHHHHHHHHHcCC
Q 026274 47 YGLFVWPCSV-ILAEYVWQQ---RYRFSGANVVELGAGTSLPGLVAAKV-G--SNVTLTDDSNRIEVLKNMRRVCEMNKL 119 (241)
Q Consensus 47 ~g~~~W~~s~-~L~~~l~~~---~~~~~~~~VLElGcGtGl~sl~la~~-g--~~V~~tD~~~~~~~l~~~~~n~~~n~~ 119 (241)
...+.|+.-. .|+..|... ....+|.+|||||||+|.....+|+. | .+|+++|+++ .+++.++++++..+.
T Consensus 46 ~e~R~w~p~rSKlaa~i~~~l~~l~i~pG~~VLDlGaGsG~~t~~la~~VG~~G~V~aVD~s~--~~l~~a~~~a~~~~~ 123 (227)
T d1g8aa_ 46 EEYRIWNPNRSKLGAAIMNGLKNFPIKPGKSVLYLGIASGTTASHVSDIVGWEGKIFGIEFSP--RVLRELVPIVEERRN 123 (227)
T ss_dssp EEEEECCTTTCHHHHHHHTTCCCCCCCTTCEEEEETTTSTTHHHHHHHHHCTTSEEEEEESCH--HHHHHHHHHHSSCTT
T ss_pred eeEEEECCCccHHHHHHHccccccccCCCCEEEEeccCCCHHHHHHHHHhCCCCEEEEEeCcH--HHHHHHHHHHHhcCC
Confidence 4578887532 344444432 34557999999999999999999985 4 4899999995 799999998875543
Q ss_pred ceEEEEeecCCCCc-CcCCCCCcEEEEcCCcCCCccHHHHHHHHHHHhhcCCCeEEEEEeeccC------chhHHHHH--
Q 026274 120 NCRVMGLTWGFLDA-SIFDLNPNIILGADVFYDASAFDDLFATITYLLQSSPGSVFITTYHNRS------GHHLIEFL-- 190 (241)
Q Consensus 120 ~~~~~~l~w~~~~~-~~~~~~fDlIl~~dvly~~~~~~~ll~~~~~lL~~~~~~~~~~~~~~r~------~~~~~~~~-- 190 (241)
+.....+-..... ......+|+|+. | +.++.....+++.+.+.|+ +||.++++...+. ....+...
T Consensus 124 -~~~i~~d~~~~~~~~~~~~~vD~i~~-d-~~~~~~~~~~l~~~~~~Lk--pgG~lvi~~ka~~~~~~~~~~~v~~~v~~ 198 (227)
T d1g8aa_ 124 -IVPILGDATKPEEYRALVPKVDVIFE-D-VAQPTQAKILIDNAEVYLK--RGGYGMIAVKSRSIDVTKEPEQVFREVER 198 (227)
T ss_dssp -EEEEECCTTCGGGGTTTCCCEEEEEE-C-CCSTTHHHHHHHHHHHHEE--EEEEEEEEEEGGGTCTTSCHHHHHHHHHH
T ss_pred -ceEEEEECCCcccccccccceEEEEE-E-ccccchHHHHHHHHHHhcc--cCCeEEEEEECCccCCCCCHHHHHHHHHH
Confidence 3333444333221 122347888875 3 4566788889999999998 6677666643321 12222221
Q ss_pred HHHcCCEEEEEe
Q 026274 191 MVKWGLKCVKLV 202 (241)
Q Consensus 191 ~~~~g~~~~~i~ 202 (241)
+.+.||+.....
T Consensus 199 l~~~gf~iie~i 210 (227)
T d1g8aa_ 199 ELSEYFEVIERL 210 (227)
T ss_dssp HHHTTSEEEEEE
T ss_pred HHHcCCEEEEEE
Confidence 245699887763
|
| >d2b25a1 c.66.1.13 (A:6-329) Hypothetical protein FLJ20628 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: tRNA(1-methyladenosine) methyltransferase-like domain: Hypothetical protein FLJ20628 species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.16 E-value=1.3e-10 Score=99.64 Aligned_cols=129 Identities=16% Similarity=0.108 Sum_probs=83.1
Q ss_pred CCCCCCeEEEecCCCCHHHHHHHHh-C--CEEEEEcCCCcHHHHHHHHHHHHHcC------------CceEEEEeecCCC
Q 026274 67 YRFSGANVVELGAGTSLPGLVAAKV-G--SNVTLTDDSNRIEVLKNMRRVCEMNK------------LNCRVMGLTWGFL 131 (241)
Q Consensus 67 ~~~~~~~VLElGcGtGl~sl~la~~-g--~~V~~tD~~~~~~~l~~~~~n~~~n~------------~~~~~~~l~w~~~ 131 (241)
...+|.+|||+|||+|.+++.+|+. | .+|++.|+++ ++++.+++|++..+ .++.+...|..+.
T Consensus 95 ~i~pG~rVLE~GtGsG~lt~~LAr~vg~~G~V~t~E~~~--~~~~~A~~n~~~~~~~~~~~~~~~~~~nv~~~~~di~~~ 172 (324)
T d2b25a1 95 DINPGDTVLEAGSGSGGMSLFLSKAVGSQGRVISFEVRK--DHHDLAKKNYKHWRDSWKLSHVEEWPDNVDFIHKDISGA 172 (324)
T ss_dssp TCCTTCEEEEECCTTSHHHHHHHHHHCTTCEEEEEESSH--HHHHHHHHHHHHHHHHHTTTCSSCCCCCEEEEESCTTCC
T ss_pred CCCCCCEEEEecccccHHHHHHHHHhCCCcEEEEecCCH--HHHHHHHHHHHHhhhhhhhhhhhccccceeEEecchhhc
Confidence 4568999999999999999999985 4 3899999995 79999999987532 2456666665544
Q ss_pred CcCcCCCCCcEEEEcCCcCCCccHHHHHHHHHHHhhcCCCeEEEEEeec-cCchhHHHHHH-HHcCCEEEEEecC
Q 026274 132 DASIFDLNPNIILGADVFYDASAFDDLFATITYLLQSSPGSVFITTYHN-RSGHHLIEFLM-VKWGLKCVKLVDG 204 (241)
Q Consensus 132 ~~~~~~~~fDlIl~~dvly~~~~~~~ll~~~~~lL~~~~~~~~~~~~~~-r~~~~~~~~~~-~~~g~~~~~i~~~ 204 (241)
.....+..||.|+. | .++....+..+.++|+ |||.+++-.+. .+.....+.+. ..+||....+.+.
T Consensus 173 ~~~~~~~~fD~V~L-D----~p~P~~~l~~~~~~LK--pGG~lv~~~P~i~Qv~~~~~~l~~~~~~f~~i~~~E~ 240 (324)
T d2b25a1 173 TEDIKSLTFDAVAL-D----MLNPHVTLPVFYPHLK--HGGVCAVYVVNITQVIELLDGIRTCELALSCEKISEV 240 (324)
T ss_dssp C-------EEEEEE-C----SSSTTTTHHHHGGGEE--EEEEEEEEESSHHHHHHHHHHHHHHTCCEEEEEEECC
T ss_pred ccccCCCCcceEee-c----CcCHHHHHHHHHHhcc--CCCEEEEEeCCHHHHHHHHHHHHHcCCCceeeEEEEE
Confidence 33344558999985 3 3445567888999999 55544432222 11122333333 2457877776543
|
| >d2ifta1 c.66.1.46 (A:11-193) Putative methylase HI0767 {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: YhhF-like domain: Putative methylase HI0767 species: Haemophilus influenzae [TaxId: 727]
Probab=99.15 E-value=8.9e-11 Score=92.71 Aligned_cols=109 Identities=11% Similarity=0.103 Sum_probs=80.8
Q ss_pred CCCCeEEEecCCCCHHHHHHHHhCC-EEEEEcCCCcHHHHHHHHHHHHHcCCc---eEEEEeecCCCCc-CcCCCCCcEE
Q 026274 69 FSGANVVELGAGTSLPGLVAAKVGS-NVTLTDDSNRIEVLKNMRRVCEMNKLN---CRVMGLTWGFLDA-SIFDLNPNII 143 (241)
Q Consensus 69 ~~~~~VLElGcGtGl~sl~la~~g~-~V~~tD~~~~~~~l~~~~~n~~~n~~~---~~~~~l~w~~~~~-~~~~~~fDlI 143 (241)
..+.+||||.||||.+|+.++++|| +|+++|.+. .+++.+++|++..+.. ..+...+..+... .....+||+|
T Consensus 42 ~~~~~vLDlFaGsG~~glEalSRGA~~v~fVE~~~--~a~~~ik~Ni~~l~~~~~~~~~~~~d~~~~l~~~~~~~~fDlI 119 (183)
T d2ifta1 42 IHQSECLDGFAGSGSLGFEALSRQAKKVTFLELDK--TVANQLKKNLQTLKCSSEQAEVINQSSLDFLKQPQNQPHFDVV 119 (183)
T ss_dssp HTTCEEEETTCTTCHHHHHHHHTTCSEEEEECSCH--HHHHHHHHHHHHTTCCTTTEEEECSCHHHHTTSCCSSCCEEEE
T ss_pred cccceEeecccCccceeeeeeeecceeeEEeeccc--chhhhHhhHHhhhcccccccccccccccccccccccCCcccEE
Confidence 5778999999999999999999999 899999995 6999999999876642 3333332221111 1223479999
Q ss_pred EEcCCcCCCccHHHHHHHHHH--HhhcCCCeEEEEEeeccC
Q 026274 144 LGADVFYDASAFDDLFATITY--LLQSSPGSVFITTYHNRS 182 (241)
Q Consensus 144 l~~dvly~~~~~~~ll~~~~~--lL~~~~~~~~~~~~~~r~ 182 (241)
++ |+-|.......+++.+.. +|+ +++++++.+..+.
T Consensus 120 Fl-DPPY~~~~~~~~l~~l~~~~~L~--~~~liiiE~~~~~ 157 (183)
T d2ifta1 120 FL-DPPFHFNLAEQAISLLCENNWLK--PNALIYVETEKDK 157 (183)
T ss_dssp EE-CCCSSSCHHHHHHHHHHHTTCEE--EEEEEEEEEESSS
T ss_pred Ee-chhHhhhhHHHHHHHHHHhCCcC--CCcEEEEEecCCC
Confidence 75 666777778888888765 465 6788888876543
|
| >d1i1na_ c.66.1.7 (A:) Protein-L-isoaspartyl O-methyltransferase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Protein-L-isoaspartyl O-methyltransferase domain: Protein-L-isoaspartyl O-methyltransferase species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.14 E-value=2.4e-10 Score=93.03 Aligned_cols=112 Identities=13% Similarity=0.082 Sum_probs=77.8
Q ss_pred HHHHHHHHhc-cCCCCCCeEEEecCCCCHHHHHHHHh-C--CEEEEEcCCCcHHHHHHHHHHHHHcCC------ceEEEE
Q 026274 56 VILAEYVWQQ-RYRFSGANVVELGAGTSLPGLVAAKV-G--SNVTLTDDSNRIEVLKNMRRVCEMNKL------NCRVMG 125 (241)
Q Consensus 56 ~~L~~~l~~~-~~~~~~~~VLElGcGtGl~sl~la~~-g--~~V~~tD~~~~~~~l~~~~~n~~~n~~------~~~~~~ 125 (241)
...|..+... ....+|.+|||+|||+|..+..+|+. | .+|+++|+++ ++++.+++|++..+. ++.+..
T Consensus 61 ~~~a~~le~L~~~l~~g~~VLdiG~GsGy~ta~la~l~~~~g~V~~ie~~~--~l~~~a~~~l~~~~~~~~~~~~~~~~~ 138 (224)
T d1i1na_ 61 HMHAYALELLFDQLHEGAKALDVGSGSGILTACFARMVGCTGKVIGIDHIK--ELVDDSVNNVRKDDPTLLSSGRVQLVV 138 (224)
T ss_dssp HHHHHHHHHTTTTSCTTCEEEEETCTTSHHHHHHHHHHCTTCEEEEEESCH--HHHHHHHHHHHHHCTHHHHTSSEEEEE
T ss_pred HHHHHHHHHHhhccCCCCeEEEecCCCCHHHHHHHHHhCCCceEEEEcCCH--HHHHHHHHhccccCcccccccceEEEE
Confidence 3444444432 24557889999999999999888885 3 4899999995 799999999987654 344444
Q ss_pred eecCCCCcCcCCCCCcEEEEcCCcCCCccHHHHHHHHHHHhhcCCCeEEEEEee
Q 026274 126 LTWGFLDASIFDLNPNIILGADVFYDASAFDDLFATITYLLQSSPGSVFITTYH 179 (241)
Q Consensus 126 l~w~~~~~~~~~~~fDlIl~~dvly~~~~~~~ll~~~~~lL~~~~~~~~~~~~~ 179 (241)
.|.... .....+||+|+....+.+.+ +.+.+.|+ |||.+++...
T Consensus 139 gD~~~~--~~~~~~fD~I~~~~~~~~ip------~~l~~~Lk--pGG~LV~pv~ 182 (224)
T d1i1na_ 139 GDGRMG--YAEEAPYDAIHVGAAAPVVP------QALIDQLK--PGGRLILPVG 182 (224)
T ss_dssp SCGGGC--CGGGCCEEEEEECSBBSSCC------HHHHHTEE--EEEEEEEEES
T ss_pred eecccc--cchhhhhhhhhhhcchhhcC------HHHHhhcC--CCcEEEEEEc
Confidence 333221 11235899999988877643 34567788 6777777643
|
| >d1jg1a_ c.66.1.7 (A:) Protein-L-isoaspartyl O-methyltransferase {Archaeon Pyrococcus furiosus [TaxId: 2261]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Protein-L-isoaspartyl O-methyltransferase domain: Protein-L-isoaspartyl O-methyltransferase species: Archaeon Pyrococcus furiosus [TaxId: 2261]
Probab=99.03 E-value=8e-10 Score=89.34 Aligned_cols=107 Identities=14% Similarity=0.109 Sum_probs=79.1
Q ss_pred HHHhccCCCCCCeEEEecCCCCHHHHHHHHh-CCEEEEEcCCCcHHHHHHHHHHHHHcCC-ceEEEEeecCCCCcCcCCC
Q 026274 61 YVWQQRYRFSGANVVELGAGTSLPGLVAAKV-GSNVTLTDDSNRIEVLKNMRRVCEMNKL-NCRVMGLTWGFLDASIFDL 138 (241)
Q Consensus 61 ~l~~~~~~~~~~~VLElGcGtGl~sl~la~~-g~~V~~tD~~~~~~~l~~~~~n~~~n~~-~~~~~~l~w~~~~~~~~~~ 138 (241)
.+.+.....++.+|||+|||||..+..+|+. |.+|+++|.++ ++++.+++|+...+. ++.+...|..+... ...
T Consensus 69 ~ml~~L~l~~g~~VLeIGsGsGY~taila~l~g~~V~~ie~~~--~l~~~a~~~l~~~g~~nv~~~~gd~~~g~~--~~~ 144 (215)
T d1jg1a_ 69 IMLEIANLKPGMNILEVGTGSGWNAALISEIVKTDVYTIERIP--ELVEFAKRNLERAGVKNVHVILGDGSKGFP--PKA 144 (215)
T ss_dssp HHHHHHTCCTTCCEEEECCTTSHHHHHHHHHHCSCEEEEESCH--HHHHHHHHHHHHTTCCSEEEEESCGGGCCG--GGC
T ss_pred HHHHhhccCccceEEEecCCCChhHHHHHHhhCceeEEEeccH--HHHHHHHHHHHHcCCceeEEEECccccCCc--ccC
Confidence 3344445678899999999999999999976 77899999995 699999999998875 57777666544321 235
Q ss_pred CCcEEEEcCCcCCCccHHHHHHHHHHHhhcCCCeEEEEEee
Q 026274 139 NPNIILGADVFYDASAFDDLFATITYLLQSSPGSVFITTYH 179 (241)
Q Consensus 139 ~fDlIl~~dvly~~~~~~~ll~~~~~lL~~~~~~~~~~~~~ 179 (241)
+||.|+..-.+.+.+ .. +.+.|+ +||.+++...
T Consensus 145 pfD~Iiv~~a~~~ip--~~----l~~qL~--~gGrLv~pv~ 177 (215)
T d1jg1a_ 145 PYDVIIVTAGAPKIP--EP----LIEQLK--IGGKLIIPVG 177 (215)
T ss_dssp CEEEEEECSBBSSCC--HH----HHHTEE--EEEEEEEEEC
T ss_pred cceeEEeecccccCC--HH----HHHhcC--CCCEEEEEEc
Confidence 899999888776543 23 445677 6777776643
|
| >d1nw3a_ c.66.1.31 (A:) Catalytic, N-terminal domain of histone methyltransferase Dot1l {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Catalytic, N-terminal domain of histone methyltransferase Dot1l domain: Catalytic, N-terminal domain of histone methyltransferase Dot1l species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.96 E-value=9.1e-10 Score=94.43 Aligned_cols=113 Identities=11% Similarity=0.031 Sum_probs=78.3
Q ss_pred HHHHHHhccCCCCCCeEEEecCCCCHHHHHHHHh-CC-EEEEEcCCCcHHHHHHHHHHHHHc----------CCceEEEE
Q 026274 58 LAEYVWQQRYRFSGANVVELGAGTSLPGLVAAKV-GS-NVTLTDDSNRIEVLKNMRRVCEMN----------KLNCRVMG 125 (241)
Q Consensus 58 L~~~l~~~~~~~~~~~VLElGcGtGl~sl~la~~-g~-~V~~tD~~~~~~~l~~~~~n~~~n----------~~~~~~~~ 125 (241)
+.+.+.+.....++.+|||||||+|.+.+.+|+. ++ +++|+|+++ ++++.++++.+.. ..++++..
T Consensus 139 ~~~~~~~~~~l~~~~~vlD~GcG~G~~~~~~a~~~~~~~~~Gid~s~--~~~~~a~~~~~~~~~~~~~~g~~~~~i~~~~ 216 (328)
T d1nw3a_ 139 LVAQMIDEIKMTDDDLFVDLGSGVGQVVLQVAAATNCKHHYGVEKAD--IPAKYAETMDREFRKWMKWYGKKHAEYTLER 216 (328)
T ss_dssp HHHHHHHHSCCCTTCEEEEETCTTSHHHHHHHHHCCCSEEEEEECSH--HHHHHHHHHHHHHHHHHHHHTCCCCCEEEEE
T ss_pred HHHHHHHHcCCCCCCEEEEcCCCCCHHHHHHHHHhCCCeEEEEeCCH--HHHHHHHHHHHHHHHHhhhccccCCceEEEE
Confidence 3444444445567889999999999999988875 55 799999995 6888887765432 23567776
Q ss_pred eecCCCCcCcCCC--CCcEEEEcCCcCCCccHHHHHHHHHHHhhcCCCeEEEEE
Q 026274 126 LTWGFLDASIFDL--NPNIILGADVFYDASAFDDLFATITYLLQSSPGSVFITT 177 (241)
Q Consensus 126 l~w~~~~~~~~~~--~fDlIl~~dvly~~~~~~~ll~~~~~lL~~~~~~~~~~~ 177 (241)
.|..+.. ..+. ..|+|+++.. ++.+++...++.+.+.|| |||.+++.
T Consensus 217 gd~~~~~--~~~~~~~advi~~~~~-~f~~~~~~~l~e~~r~LK--pGg~iv~~ 265 (328)
T d1nw3a_ 217 GDFLSEE--WRERIANTSVIFVNNF-AFGPEVDHQLKERFANMK--EGGRIVSS 265 (328)
T ss_dssp CCTTSHH--HHHHHHHCSEEEECCT-TTCHHHHHHHHHHHTTCC--TTCEEEES
T ss_pred Ccccccc--cccccCcceEEEEcce-ecchHHHHHHHHHHHhCC--CCcEEEEe
Confidence 6654321 1111 3578887654 456677788888889998 66766653
|
| >d1r18a_ c.66.1.7 (A:) Protein-L-isoaspartyl O-methyltransferase {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Protein-L-isoaspartyl O-methyltransferase domain: Protein-L-isoaspartyl O-methyltransferase species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]
Probab=98.89 E-value=5.3e-09 Score=84.83 Aligned_cols=112 Identities=13% Similarity=0.058 Sum_probs=76.8
Q ss_pred HHHHHHHHhcc-CCCCCCeEEEecCCCCHHHHHHHHh----C----CEEEEEcCCCcHHHHHHHHHHHHHcC------Cc
Q 026274 56 VILAEYVWQQR-YRFSGANVVELGAGTSLPGLVAAKV----G----SNVTLTDDSNRIEVLKNMRRVCEMNK------LN 120 (241)
Q Consensus 56 ~~L~~~l~~~~-~~~~~~~VLElGcGtGl~sl~la~~----g----~~V~~tD~~~~~~~l~~~~~n~~~n~------~~ 120 (241)
...+..+.... ...++.+|||+|||||..+..+|+. | .+|+++|+++ ++++.+++|+...+ .+
T Consensus 65 ~~~a~~l~~L~~~l~~g~~VLeIGtGsGY~ta~la~l~g~~g~~~~~~V~~iE~~~--~l~~~a~~~l~~~~~~~~~~~n 142 (223)
T d1r18a_ 65 HMHAFALEYLRDHLKPGARILDVGSGSGYLTACFYRYIKAKGVDADTRIVGIEHQA--ELVRRSKANLNTDDRSMLDSGQ 142 (223)
T ss_dssp HHHHHHHHHTTTTCCTTCEEEEESCTTSHHHHHHHHHHHHSCCCTTCEEEEEESCH--HHHHHHHHHHHHHHHHHHHHTS
T ss_pred hhHHHHHHHHhhccCCCCeEEEecCCCCHHHHHHHHHhhhccCCcccEEEEEecCH--HHHHHHHHhhhhcchhhcCccE
Confidence 34445444332 4567899999999999998888876 2 3899999995 79999988876542 24
Q ss_pred eEEEEeecCCCCcCcCCCCCcEEEEcCCcCCCccHHHHHHHHHHHhhcCCCeEEEEEee
Q 026274 121 CRVMGLTWGFLDASIFDLNPNIILGADVFYDASAFDDLFATITYLLQSSPGSVFITTYH 179 (241)
Q Consensus 121 ~~~~~l~w~~~~~~~~~~~fDlIl~~dvly~~~~~~~ll~~~~~lL~~~~~~~~~~~~~ 179 (241)
+.+...|..+... ...+||.|+..-.+.+.+ +.+.+.|+ +||.+++...
T Consensus 143 v~~~~~d~~~~~~--~~~~fD~Iiv~~a~~~~p------~~l~~~Lk--~gG~lV~pvg 191 (223)
T d1r18a_ 143 LLIVEGDGRKGYP--PNAPYNAIHVGAAAPDTP------TELINQLA--SGGRLIVPVG 191 (223)
T ss_dssp EEEEESCGGGCCG--GGCSEEEEEECSCBSSCC------HHHHHTEE--EEEEEEEEES
T ss_pred EEEEecccccccc--cccceeeEEEEeechhch------HHHHHhcC--CCcEEEEEEe
Confidence 6666655433211 234899999888776543 23567787 6777776654
|
| >d1u2za_ c.66.1.31 (A:) Catalytic, N-terminal domain of histone methyltransferase Dot1l {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Catalytic, N-terminal domain of histone methyltransferase Dot1l domain: Catalytic, N-terminal domain of histone methyltransferase Dot1l species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=98.85 E-value=1.7e-09 Score=95.14 Aligned_cols=123 Identities=16% Similarity=0.083 Sum_probs=80.0
Q ss_pred CcceEEeccHHHHHHHHHhccCCCCCCeEEEecCCCCHHHHHHHHh-CC-EEEEEcCCCcHHHHHHHHHHHHHcC-----
Q 026274 46 EYGLFVWPCSVILAEYVWQQRYRFSGANVVELGAGTSLPGLVAAKV-GS-NVTLTDDSNRIEVLKNMRRVCEMNK----- 118 (241)
Q Consensus 46 ~~g~~~W~~s~~L~~~l~~~~~~~~~~~VLElGcGtGl~sl~la~~-g~-~V~~tD~~~~~~~l~~~~~n~~~n~----- 118 (241)
.+|=..|+ +..-+.+.....+|.++||||||+|.+.+.+|+. |+ +|+|+|+++ .+++.++++++..+
T Consensus 196 vYGEl~~~----~i~~Il~~l~Lkpgd~fLDLGCG~G~~vl~aA~~~g~~~v~GIDiS~--~~i~~Ak~~~~e~~~~~~~ 269 (406)
T d1u2za_ 196 VYGELLPN----FLSDVYQQCQLKKGDTFMDLGSGVGNCVVQAALECGCALSFGCEIMD--DASDLTILQYEELKKRCKL 269 (406)
T ss_dssp CCCCBCHH----HHHHHHHHTTCCTTCEEEEESCTTSHHHHHHHHHHCCSEEEEEECCH--HHHHHHHHHHHHHHHHHHH
T ss_pred ccccCCHH----HHHHHHHHhCCCCCCEEEeCCCCCcHHHHHHHHHcCCCeEEEEeCCH--HHHHHHHHHHHHHhhhhhh
Confidence 34544444 3333444445668889999999999998888875 64 899999995 69999988876532
Q ss_pred --CceEEEEeecCCCC-c-CcCC---CCCcEEEEcCCcCCCccHHHHHHHHHHHhhcCCCeEEEEE
Q 026274 119 --LNCRVMGLTWGFLD-A-SIFD---LNPNIILGADVFYDASAFDDLFATITYLLQSSPGSVFITT 177 (241)
Q Consensus 119 --~~~~~~~l~w~~~~-~-~~~~---~~fDlIl~~dvly~~~~~~~ll~~~~~lL~~~~~~~~~~~ 177 (241)
.......+...... . +..+ ..+|+|+.+. +.+.+.+...++.+.+.|| |||.|++.
T Consensus 270 ~g~~~~~~~~~~~~~f~~~~~~d~~~~~adVV~inn-~~f~~~l~~~L~ei~r~LK--PGGrIVs~ 332 (406)
T d1u2za_ 270 YGMRLNNVEFSLKKSFVDNNRVAELIPQCDVILVNN-FLFDEDLNKKVEKILQTAK--VGCKIISL 332 (406)
T ss_dssp TTBCCCCEEEEESSCSTTCHHHHHHGGGCSEEEECC-TTCCHHHHHHHHHHHTTCC--TTCEEEES
T ss_pred hccccccceeeeeechhhccccccccccceEEEEec-ccCchHHHHHHHHHHHhcC--CCcEEEEe
Confidence 22211222222111 1 1001 2578888765 4566788888999999998 67766653
|
| >d2avda1 c.66.1.1 (A:44-262) COMT domain-containing protein 1, COMTD1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: COMT-like domain: COMT domain-containing protein 1, COMTD1 species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.76 E-value=1.2e-08 Score=82.42 Aligned_cols=113 Identities=12% Similarity=0.016 Sum_probs=81.5
Q ss_pred HHHHHhccCCCCCCeEEEecCCCCHHHHHHHHh---CCEEEEEcCCCcHHHHHHHHHHHHHcCCc--eEEEEeecCCCCc
Q 026274 59 AEYVWQQRYRFSGANVVELGAGTSLPGLVAAKV---GSNVTLTDDSNRIEVLKNMRRVCEMNKLN--CRVMGLTWGFLDA 133 (241)
Q Consensus 59 ~~~l~~~~~~~~~~~VLElGcGtGl~sl~la~~---g~~V~~tD~~~~~~~l~~~~~n~~~n~~~--~~~~~l~w~~~~~ 133 (241)
+.+|.......+.++|||||||+|..++.+|+. +.+|+.+|.++ +..+.++++++..+.. +++...+..+...
T Consensus 48 g~lL~~L~~~~~~k~vLEiGt~~GyStl~~a~al~~~g~i~tie~~~--~~~~~A~~~~~~ag~~~~i~~~~Gda~e~l~ 125 (219)
T d2avda1 48 AQLLANLARLIQAKKALDLGTFTGYSALALALALPADGRVVTCEVDA--QPPELGRPLWRQAEAEHKIDLRLKPALETLD 125 (219)
T ss_dssp HHHHHHHHHHTTCCEEEEECCTTSHHHHHHHTTSCTTCEEEEEESCS--HHHHHHHHHHHHTTCTTTEEEEESCHHHHHH
T ss_pred HHHHHHHHHccCCCeEEEEechhhHHHHHHHHhCCCCceEEEEeech--hHHHHHHHHHHhcCccceEEEEEeehhhcch
Confidence 444443333456789999999999999999985 45999999997 6999999999988764 4444444332211
Q ss_pred C----cCCCCCcEEEEcCCcCCCccHHHHHHHHHHHhhcCCCeEEEEEe
Q 026274 134 S----IFDLNPNIILGADVFYDASAFDDLFATITYLLQSSPGSVFITTY 178 (241)
Q Consensus 134 ~----~~~~~fDlIl~~dvly~~~~~~~ll~~~~~lL~~~~~~~~~~~~ 178 (241)
. ....+||+|+.. .........++.+.++|+ +||++++..
T Consensus 126 ~~~~~~~~~~fD~ifiD---~dk~~y~~~~~~~~~lL~--~GGvii~Dn 169 (219)
T d2avda1 126 ELLAAGEAGTFDVAVVD---ADKENCSAYYERCLQLLR--PGGILAVLR 169 (219)
T ss_dssp HHHHTTCTTCEEEEEEC---SCSTTHHHHHHHHHHHEE--EEEEEEEEC
T ss_pred hhhhhcccCCccEEEEe---CCHHHHHHHHHHHHHHhc--CCcEEEEeC
Confidence 1 124589999974 244567778888889998 788888773
|
| >d2cl5a1 c.66.1.1 (A:3-216) Catechol O-methyltransferase, COMT {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: COMT-like domain: Catechol O-methyltransferase, COMT species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=98.74 E-value=1.1e-08 Score=82.45 Aligned_cols=127 Identities=13% Similarity=0.141 Sum_probs=82.9
Q ss_pred CCCCeEEEecCCCCHHHHHHHHh---CCEEEEEcCCCcHHHHHHHHHHHHHcCCc--eEEEEeecCCCCcCc----CCCC
Q 026274 69 FSGANVVELGAGTSLPGLVAAKV---GSNVTLTDDSNRIEVLKNMRRVCEMNKLN--CRVMGLTWGFLDASI----FDLN 139 (241)
Q Consensus 69 ~~~~~VLElGcGtGl~sl~la~~---g~~V~~tD~~~~~~~l~~~~~n~~~n~~~--~~~~~l~w~~~~~~~----~~~~ 139 (241)
.+.++|||+|||+|..++.+|+. +.+|+++|.++ ++++.+++|++..+.. +++...+..+....+ ...+
T Consensus 55 ~kpk~ILEiGt~~G~Sti~la~al~~~g~v~sid~~~--~~~~~a~~~~~~~gl~~~i~l~~Gd~~e~l~~l~~~~~~~~ 132 (214)
T d2cl5a1 55 YSPSLVLELGAYCGYSAVRMARLLQPGARLLTMEMNP--DYAAITQQMLNFAGLQDKVTILNGASQDLIPQLKKKYDVDT 132 (214)
T ss_dssp HCCSEEEEECCTTSHHHHHHHTTCCTTCEEEEEESCH--HHHHHHHHHHHHHTCGGGEEEEESCHHHHGGGHHHHSCCCC
T ss_pred hCCCEEEEEccCchhHHHHHHHhCCCccEEEEEeccH--HHHHHHHHHHHHcCCCccceeeeccccccccchhhcccccc
Confidence 35579999999999999999975 56999999995 7999999999988873 666665554432221 2247
Q ss_pred CcEEEEcCCcCCCccHHHH--HHHHHHHhhcCCCeEEEEEeeccCchh-HHHHHHHHcCCEEEEEe
Q 026274 140 PNIILGADVFYDASAFDDL--FATITYLLQSSPGSVFITTYHNRSGHH-LIEFLMVKWGLKCVKLV 202 (241)
Q Consensus 140 fDlIl~~dvly~~~~~~~l--l~~~~~lL~~~~~~~~~~~~~~r~~~~-~~~~~~~~~g~~~~~i~ 202 (241)
||+|+.. .+....... +....++|+ |||++++..-.+.+.. ....+.+...|....+.
T Consensus 133 ~D~ifiD---~~~~~~~~~~~l~~~~~lLk--pGGvIv~Ddvl~~g~~~~~~~vr~~~~~~~~~~~ 193 (214)
T d2cl5a1 133 LDMVFLD---HWKDRYLPDTLLLEKCGLLR--KGTVLLADNVIVPGTPDFLAYVRGSSSFECTHYS 193 (214)
T ss_dssp EEEEEEC---SCGGGHHHHHHHHHHTTCEE--EEEEEEESCCCCCCCHHHHHHHHHCTTEEEEEEE
T ss_pred cceeeec---ccccccccHHHHHHHhCccC--CCcEEEEeCcCCCCChHHHHHHhccCceeehhhh
Confidence 9999863 222232232 334445677 6788777644343333 33334444566666553
|
| >d2f8la1 c.66.1.45 (A:2-329) Hypothetical protein Lmo1582 {Listeria monocytogenes [TaxId: 1639]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: N-6 DNA Methylase-like domain: Hypothetical protein Lmo1582 species: Listeria monocytogenes [TaxId: 1639]
Probab=98.73 E-value=1.7e-07 Score=79.50 Aligned_cols=165 Identities=5% Similarity=-0.058 Sum_probs=100.5
Q ss_pred HHHHHHHhccCCCCCCeEEEecCCCCHHHHHHHHh----C---CEEEEEcCCCcHHHHHHHHHHHHHcCCceEEEEeecC
Q 026274 57 ILAEYVWQQRYRFSGANVVELGAGTSLPGLVAAKV----G---SNVTLTDDSNRIEVLKNMRRVCEMNKLNCRVMGLTWG 129 (241)
Q Consensus 57 ~L~~~l~~~~~~~~~~~VLElGcGtGl~sl~la~~----g---~~V~~tD~~~~~~~l~~~~~n~~~n~~~~~~~~l~w~ 129 (241)
.+++.+........+.+|||.|||+|.+.+.+... + .+++|+|+++ .++..++.|+..++....+...++.
T Consensus 104 ~m~~l~~~~~~~~~~~~vlDp~~GsG~~l~~~~~~l~~~~~~~~~~~g~di~~--~~~~~a~~~~~~~~~~~~~~~~d~~ 181 (328)
T d2f8la1 104 IVAYLLEKVIQKKKNVSILDPACGTANLLTTVINQLELKGDVDVHASGVDVDD--LLISLALVGADLQRQKMTLLHQDGL 181 (328)
T ss_dssp HHHHHHHHHHTTCSEEEEEETTCTTSHHHHHHHHHHHTTSSCEEEEEEEESCH--HHHHHHHHHHHHHTCCCEEEESCTT
T ss_pred HHHHHHHHHhCCCCCCEEEeCCCCcchhHHHHHHHHHhccCccceEEEecccH--HHHHHHHHHHHHhhhhhhhhccccc
Confidence 45555443333445678999999999887777642 2 2799999995 6999999999998887776665543
Q ss_pred CCCcCcCCCCCcEEEEcCCcCCCc------------------cHHHHHHHHHHHhhcCCCeEEEEEeec---cCchhHHH
Q 026274 130 FLDASIFDLNPNIILGADVFYDAS------------------AFDDLFATITYLLQSSPGSVFITTYHN---RSGHHLIE 188 (241)
Q Consensus 130 ~~~~~~~~~~fDlIl~~dvly~~~------------------~~~~ll~~~~~lL~~~~~~~~~~~~~~---r~~~~~~~ 188 (241)
. .....+||+|++++++-... ....++....++|++++..+++++... ........
T Consensus 182 ~---~~~~~~fD~vi~NPPy~~~~~~~~~~~~~~~~~~~~~~~~~~Fi~~~~~~Lk~~G~~~~I~p~~~l~~~~~~~lR~ 258 (328)
T d2f8la1 182 A---NLLVDPVDVVISDLPVGYYPDDENAKTFELCREEGHSFAHFLFIEQGMRYTKPGGYLFFLVPDAMFGTSDFAKVDK 258 (328)
T ss_dssp S---CCCCCCEEEEEEECCCSEESCHHHHTTSTTCCSSSCEEHHHHHHHHHHHTEEEEEEEEEEEEGGGGGSTTHHHHHH
T ss_pred c---ccccccccccccCCCCCCCccchhhhhcchhcccCcchHHHHHHHHHHHhcCCCCceEEEecCccccCchhHHHHH
Confidence 2 22345899999999863211 233467888889985444455555322 22233444
Q ss_pred HHHHHcCCEEEEEecCCCCCCcccccccCCCeEEEEEEeccCCC
Q 026274 189 FLMVKWGLKCVKLVDGFSFLPHYKARELNGNIQLAEIVLNHESP 232 (241)
Q Consensus 189 ~~~~~~g~~~~~i~~~~~~~p~~~~~~~~~~~~l~~i~~~~~~~ 232 (241)
.+.+...+....-. ++.. ...-.....++.+.+..+..
T Consensus 259 ~L~~~~~i~~ii~l-----p~~~-F~~~~~~t~ilvl~K~~~~~ 296 (328)
T d2f8la1 259 FIKKNGHIEGIIKL-----PETL-FKSEQARKSILILEKADVDV 296 (328)
T ss_dssp HHHHHEEEEEEEEC-----CGGG-SCC-CCCEEEEEEEECCTTC
T ss_pred HHHhCCcEEEEEEC-----Cccc-cCCCCCCeEEEEEECCCCCc
Confidence 55565443322211 1111 12234567777787665433
|
| >d1susa1 c.66.1.1 (A:21-247) Caffeoyl-CoA O-methyltransferase {Alfalfa (Medicago sativa) [TaxId: 3879]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: COMT-like domain: Caffeoyl-CoA O-methyltransferase species: Alfalfa (Medicago sativa) [TaxId: 3879]
Probab=98.62 E-value=5.1e-08 Score=79.12 Aligned_cols=102 Identities=15% Similarity=0.070 Sum_probs=78.3
Q ss_pred CCCCeEEEecCCCCHHHHHHHHh---CCEEEEEcCCCcHHHHHHHHHHHHHcCCc--eEEEEeecCCCCcCc-----CCC
Q 026274 69 FSGANVVELGAGTSLPGLVAAKV---GSNVTLTDDSNRIEVLKNMRRVCEMNKLN--CRVMGLTWGFLDASI-----FDL 138 (241)
Q Consensus 69 ~~~~~VLElGcGtGl~sl~la~~---g~~V~~tD~~~~~~~l~~~~~n~~~n~~~--~~~~~l~w~~~~~~~-----~~~ 138 (241)
.+.++|||+|+++|.-++.+|+. +++|+.+|.++ +..+.++++++..+.. +++...+..+....+ ...
T Consensus 58 ~~~k~iLEiGT~~GyStl~la~al~~~g~v~tie~~~--~~~~~A~~~~~~~g~~~~i~~~~g~a~~~L~~l~~~~~~~~ 135 (227)
T d1susa1 58 INAKNTMEIGVYTGYSLLATALAIPEDGKILAMDINK--ENYELGLPVIKKAGVDHKIDFREGPALPVLDEMIKDEKNHG 135 (227)
T ss_dssp HTCCEEEEECCGGGHHHHHHHHHSCTTCEEEEEESCC--HHHHHHHHHHHHTTCGGGEEEEESCHHHHHHHHHHCGGGTT
T ss_pred cCCCcEEEecchhhhhHHHHHhhCCCCcEEEEEeccc--hhHHHHHHHHHHhccccceeeeehHHHHHHHHHHhccccCC
Confidence 45689999999999999999974 45999999997 6899999999988874 555555554332221 235
Q ss_pred CCcEEEEcCCcCCCccHHHHHHHHHHHhhcCCCeEEEEE
Q 026274 139 NPNIILGADVFYDASAFDDLFATITYLLQSSPGSVFITT 177 (241)
Q Consensus 139 ~fDlIl~~dvly~~~~~~~ll~~~~~lL~~~~~~~~~~~ 177 (241)
+||+|+. |. +.......++.+..+|+ +||++++.
T Consensus 136 ~fD~iFi-Da--~k~~y~~~~e~~~~ll~--~gGiii~D 169 (227)
T d1susa1 136 SYDFIFV-DA--DKDNYLNYHKRLIDLVK--VGGVIGYD 169 (227)
T ss_dssp CBSEEEE-CS--CSTTHHHHHHHHHHHBC--TTCCEEEE
T ss_pred ceeEEEe-cc--chhhhHHHHHHHHhhcC--CCcEEEEc
Confidence 8999997 43 44667788888899997 77888877
|
| >d1fp1d2 c.66.1.12 (D:129-372) Chalcone O-methyltransferase {Alfalfa (Medicago sativa) [TaxId: 3879]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Plant O-methyltransferase, C-terminal domain domain: Chalcone O-methyltransferase species: Alfalfa (Medicago sativa) [TaxId: 3879]
Probab=98.51 E-value=1.1e-06 Score=71.76 Aligned_cols=93 Identities=14% Similarity=0.052 Sum_probs=66.0
Q ss_pred CCCeEEEecCCCCHHHHHHHHhC--CEEEEEcCCCcHHHHHHHHHHHHHcCCceEEEEeecCCCCcCcCCCCCcEEEEcC
Q 026274 70 SGANVVELGAGTSLPGLVAAKVG--SNVTLTDDSNRIEVLKNMRRVCEMNKLNCRVMGLTWGFLDASIFDLNPNIILGAD 147 (241)
Q Consensus 70 ~~~~VLElGcGtGl~sl~la~~g--~~V~~tD~~~~~~~l~~~~~n~~~n~~~~~~~~l~w~~~~~~~~~~~fDlIl~~d 147 (241)
...+|||||||+|..++.+++.. .++++.|+. ++++... ...++++...|+.+ +.. ..|+++.+.
T Consensus 81 ~~~~vlDiGGG~G~~~~~l~~~~P~l~~~v~Dlp---~vi~~~~-----~~~ri~~~~gd~~~---~~p--~~D~~~l~~ 147 (244)
T d1fp1d2 81 GISTLVDVGGGSGRNLELIISKYPLIKGINFDLP---QVIENAP-----PLSGIEHVGGDMFA---SVP--QGDAMILKA 147 (244)
T ss_dssp TCSEEEEETCTTSHHHHHHHHHCTTCEEEEEECH---HHHTTCC-----CCTTEEEEECCTTT---CCC--CEEEEEEES
T ss_pred CCcEEEEecCCCcHHHHHHHHHCCCCeEEEecch---hhhhccC-----CCCCeEEecCCccc---ccc--cceEEEEeh
Confidence 44789999999999999999874 489999985 4543211 12356777666543 222 469999999
Q ss_pred CcCCCcc--HHHHHHHHHHHhhcCCCeEEEEE
Q 026274 148 VFYDASA--FDDLFATITYLLQSSPGSVFITT 177 (241)
Q Consensus 148 vly~~~~--~~~ll~~~~~lL~~~~~~~~~~~ 177 (241)
++++.++ ...+++.+.+.|+ ||+.+++.
T Consensus 148 vLh~~~de~~~~iL~~~~~aL~--pgg~llI~ 177 (244)
T d1fp1d2 148 VCHNWSDEKCIEFLSNCHKALS--PNGKVIIV 177 (244)
T ss_dssp SGGGSCHHHHHHHHHHHHHHEE--EEEEEEEE
T ss_pred hhhhCCHHHHHHHHHHHHHHcC--CCcEEEEE
Confidence 9988654 6688999999998 45544433
|
| >d1jsxa_ c.66.1.20 (A:) Glucose-inhibited division protein B (GidB) {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Glucose-inhibited division protein B (GidB) domain: Glucose-inhibited division protein B (GidB) species: Escherichia coli [TaxId: 562]
Probab=98.43 E-value=2.3e-06 Score=68.09 Aligned_cols=98 Identities=18% Similarity=0.251 Sum_probs=72.4
Q ss_pred CCCCeEEEecCCCCHHHHHHHHhC--CEEEEEcCCCcHHHHHHHHHHHHHcCC-ceEEEEeecCCCCcCcCCCCCcEEEE
Q 026274 69 FSGANVVELGAGTSLPGLVAAKVG--SNVTLTDDSNRIEVLKNMRRVCEMNKL-NCRVMGLTWGFLDASIFDLNPNIILG 145 (241)
Q Consensus 69 ~~~~~VLElGcGtGl~sl~la~~g--~~V~~tD~~~~~~~l~~~~~n~~~n~~-~~~~~~l~w~~~~~~~~~~~fDlIl~ 145 (241)
+++++++|+|||.|++|+.+|-.. .+|+++|-+. .-+..++.-+..-++ ++.+..-+..+.. ...+||+|++
T Consensus 64 ~~~~~ilDiGsGaG~PGi~laI~~p~~~~~Lves~~--KK~~FL~~~~~~L~L~nv~v~~~R~E~~~---~~~~fD~V~s 138 (207)
T d1jsxa_ 64 LQGERFIDVGTGPGLPGIPLSIVRPEAHFTLLDSLG--KRVRFLRQVQHELKLENIEPVQSRVEEFP---SEPPFDGVIS 138 (207)
T ss_dssp CCSSEEEEETCTTTTTHHHHHHHCTTSEEEEEESCH--HHHHHHHHHHHHTTCSSEEEEECCTTTSC---CCSCEEEEEC
T ss_pred hcCCceeeeeccCCceeeehhhhcccceEEEEecch--HHHHHHHHHHHHcCCcceeeeccchhhhc---cccccceehh
Confidence 356799999999999999999874 4899999995 466677776666665 5677665555432 2347999987
Q ss_pred cCCcCCCccHHHHHHHHHHHhhcCCCeEEEEE
Q 026274 146 ADVFYDASAFDDLFATITYLLQSSPGSVFITT 177 (241)
Q Consensus 146 ~dvly~~~~~~~ll~~~~~lL~~~~~~~~~~~ 177 (241)
- -...+..+++....+++ ++|.+++-
T Consensus 139 R----A~~~~~~ll~~~~~~l~--~~g~~~~~ 164 (207)
T d1jsxa_ 139 R----AFASLNDMVSWCHHLPG--EQGRFYAL 164 (207)
T ss_dssp S----CSSSHHHHHHHHTTSEE--EEEEEEEE
T ss_pred h----hhcCHHHHHHHHHHhcC--CCcEEEEE
Confidence 3 34678889999999987 45655544
|
| >d1qama_ c.66.1.24 (A:) rRNA adenine dimethylase {Bacillus subtilis, Ermc' [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: rRNA adenine dimethylase-like domain: rRNA adenine dimethylase species: Bacillus subtilis, Ermc' [TaxId: 1423]
Probab=98.40 E-value=8e-07 Score=72.19 Aligned_cols=91 Identities=14% Similarity=0.078 Sum_probs=63.3
Q ss_pred HHHHHHhccCCCCCCeEEEecCCCCHHHHHHHHhCCEEEEEcCCCcHHHHHHHHHHHHHcCCceEEEEeecCCCCcCcCC
Q 026274 58 LAEYVWQQRYRFSGANVVELGAGTSLPGLVAAKVGSNVTLTDDSNRIEVLKNMRRVCEMNKLNCRVMGLTWGFLDASIFD 137 (241)
Q Consensus 58 L~~~l~~~~~~~~~~~VLElGcGtGl~sl~la~~g~~V~~tD~~~~~~~l~~~~~n~~~n~~~~~~~~l~w~~~~~~~~~ 137 (241)
+++.+.......++.+|||+|||+|.++..+++.+++|+++|+++ .+++.++++... ..++++...|.-+...+ .
T Consensus 9 i~~~iv~~~~~~~~d~VlEIGpG~G~LT~~Ll~~~~~v~avE~D~--~l~~~l~~~~~~-~~n~~i~~~D~l~~~~~--~ 83 (235)
T d1qama_ 9 NIDKIMTNIRLNEHDNIFEIGSGKGHFTLELVQRCNFVTAIEIDH--KLCKTTENKLVD-HDNFQVLNKDILQFKFP--K 83 (235)
T ss_dssp HHHHHHTTCCCCTTCEEEEECCTTSHHHHHHHHHSSEEEEECSCH--HHHHHHHHHTTT-CCSEEEECCCGGGCCCC--S
T ss_pred HHHHHHHhcCCCCCCeEEEECCCchHHHHHHHhCcCceEEEeecc--chHHHHHHHhhc-ccchhhhhhhhhhcccc--c
Confidence 345555655666889999999999999999999999999999995 688888876543 34667666665543221 1
Q ss_pred CCCcEEEEcCCcCCCcc
Q 026274 138 LNPNIILGADVFYDASA 154 (241)
Q Consensus 138 ~~fDlIl~~dvly~~~~ 154 (241)
.....|+ +..-|+...
T Consensus 84 ~~~~~vv-~NLPYnIss 99 (235)
T d1qama_ 84 NQSYKIF-GNIPYNIST 99 (235)
T ss_dssp SCCCEEE-EECCGGGHH
T ss_pred cccceee-eeehhhhhH
Confidence 2233444 556666433
|
| >d1af7a2 c.66.1.8 (A:92-284) Chemotaxis receptor methyltransferase CheR, C-terminal domain {Salmonella typhimurium [TaxId: 90371]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Chemotaxis receptor methyltransferase CheR, C-terminal domain domain: Chemotaxis receptor methyltransferase CheR, C-terminal domain species: Salmonella typhimurium [TaxId: 90371]
Probab=98.35 E-value=3.7e-07 Score=71.92 Aligned_cols=105 Identities=16% Similarity=0.081 Sum_probs=66.7
Q ss_pred CCCeEEEecCCCCH----HHHHHHHh----C--CEEEEEcCCCcHHHHHHHHHHHHH----cCC----------------
Q 026274 70 SGANVVELGAGTSL----PGLVAAKV----G--SNVTLTDDSNRIEVLKNMRRVCEM----NKL---------------- 119 (241)
Q Consensus 70 ~~~~VLElGcGtGl----~sl~la~~----g--~~V~~tD~~~~~~~l~~~~~n~~~----n~~---------------- 119 (241)
+..+|+..|||||- +++.+... + .+|++||+++ .+++.++..+-. .+.
T Consensus 24 ~~lrIwsaGCstGeE~YSlA~~l~e~~~~~~~~~~I~atDi~~--~~l~~A~~g~y~~~~~~~~~~~~~~~yf~~~~~~~ 101 (193)
T d1af7a2 24 GEYRVWSAAASTGEEPYSIAITLADALGMAPGRWKVFASDIDT--EVLEKARSGIYRLSELKTLSPQQLQRYFMRGTGPH 101 (193)
T ss_dssp SCEEEEESCCTTTHHHHHHHHHHHHHHCSCTTSEEEEEEESCH--HHHHHHHHTEEEGGGGTTSCHHHHHHHEEECCTTS
T ss_pred CCeEEEEeCCCCchhHHHHHHHHHHhhhhcCCceEEEeecCCh--HHhhHhhcCcccHHHHhhhhHHHHhhceeecCCCc
Confidence 34589999999995 33334332 1 2799999995 688888753210 000
Q ss_pred ------------ceEEEEeecCCCCcCcCCCCCcEEEEcCCcCCC--ccHHHHHHHHHHHhhcCCCeEEEEEee
Q 026274 120 ------------NCRVMGLTWGFLDASIFDLNPNIILGADVFYDA--SAFDDLFATITYLLQSSPGSVFITTYH 179 (241)
Q Consensus 120 ------------~~~~~~l~w~~~~~~~~~~~fDlIl~~dvly~~--~~~~~ll~~~~~lL~~~~~~~~~~~~~ 179 (241)
.+.+...+.... .....++||+|+|-+|+.|. +....+++.+.+.|+ |||.+++++.
T Consensus 102 ~~~~~~~~~~~~~v~~~~~~~~~~-~~~~~~~fDvI~CRNVLiYf~~~~~~~vl~~l~~~L~--pGG~L~lG~s 172 (193)
T d1af7a2 102 EGLVRVRQELANYVEFSSVNLLEK-QYNVPGPFDAIFCRNVMIYFDKTTQEDILRRFVPLLK--PDGLLFAGHS 172 (193)
T ss_dssp CSEEEECHHHHTTEEEEECCTTCS-SCCCCCCEEEEEECSSGGGSCHHHHHHHHHHHGGGEE--EEEEEEECTT
T ss_pred cceeehHHHHHHHHHHhhhhcccc-ccCCCCCccEEEeehhHHhcCHHHHHHHHHHHHHHhC--CCcEEEEecC
Confidence 011222111111 11123589999999999654 455789999999998 7888888843
|
| >d1xdza_ c.66.1.20 (A:) Glucose-inhibited division protein B (GidB) {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Glucose-inhibited division protein B (GidB) domain: Glucose-inhibited division protein B (GidB) species: Bacillus subtilis [TaxId: 1423]
Probab=98.34 E-value=7.3e-06 Score=66.46 Aligned_cols=146 Identities=14% Similarity=0.160 Sum_probs=90.9
Q ss_pred CCCeEEEecCCCCHHHHHHHHh--CCEEEEEcCCCcHHHHHHHHHHHHHcCC-ceEEEEeecCCCCc-CcCCCCCcEEEE
Q 026274 70 SGANVVELGAGTSLPGLVAAKV--GSNVTLTDDSNRIEVLKNMRRVCEMNKL-NCRVMGLTWGFLDA-SIFDLNPNIILG 145 (241)
Q Consensus 70 ~~~~VLElGcGtGl~sl~la~~--g~~V~~tD~~~~~~~l~~~~~n~~~n~~-~~~~~~l~w~~~~~-~~~~~~fDlIl~ 145 (241)
.+.+++|+|+|.|++|+.+|-. ..+++++|-+. .=...++.-+..-++ ++.+......+... .....+||+|++
T Consensus 70 ~~~~ilDiGSGaGfPGi~laI~~p~~~v~Lves~~--KK~~FL~~v~~~L~L~n~~i~~~R~E~~~~~~~~~~~~D~v~s 147 (239)
T d1xdza_ 70 QVNTICDVGAGAGFPSLPIKICFPHLHVTIVDSLN--KRITFLEKLSEALQLENTTFCHDRAETFGQRKDVRESYDIVTA 147 (239)
T ss_dssp GCCEEEEECSSSCTTHHHHHHHCTTCEEEEEESCH--HHHHHHHHHHHHHTCSSEEEEESCHHHHTTCTTTTTCEEEEEE
T ss_pred CCCeEEeecCCCchHHHHHHHhCCCccceeecchH--HHHHHHHHHHHHhCCCCcEEEeehhhhccccccccccceEEEE
Confidence 4678999999999999999986 34899999995 344455554444444 34444433332211 112358999998
Q ss_pred cCCcCCCccHHHHHHHHHHHhhcCCCeEEEEEeeccCchhHHHH---HHHHcCCEEEEEecCCCCCCcccccccCCCeEE
Q 026274 146 ADVFYDASAFDDLFATITYLLQSSPGSVFITTYHNRSGHHLIEF---LMVKWGLKCVKLVDGFSFLPHYKARELNGNIQL 222 (241)
Q Consensus 146 ~dvly~~~~~~~ll~~~~~lL~~~~~~~~~~~~~~r~~~~~~~~---~~~~~g~~~~~i~~~~~~~p~~~~~~~~~~~~l 222 (241)
- -...+..+++....+++ ++|.+++- ..+.....++. .....|++...+.. +.. ........+
T Consensus 148 R----Ava~l~~ll~~~~~~l~--~~g~~i~~-KG~~~~~El~~a~~~~~~~~~~~~~v~~-~~l------p~~~~~r~l 213 (239)
T d1xdza_ 148 R----AVARLSVLSELCLPLVK--KNGLFVAL-KAASAEEELNAGKKAITTLGGELENIHS-FKL------PIEESDRNI 213 (239)
T ss_dssp E----CCSCHHHHHHHHGGGEE--EEEEEEEE-ECC-CHHHHHHHHHHHHHTTEEEEEEEE-EEC------TTTCCEEEE
T ss_pred h----hhhCHHHHHHHHhhhcc--cCCEEEEE-CCCChHHHHHHHHHHHHHcCCEEEEEEE-EeC------CCCCCCEEE
Confidence 4 55688999999999998 55555444 33334333333 34677888776622 111 133456777
Q ss_pred EEEEeccCC
Q 026274 223 AEIVLNHES 231 (241)
Q Consensus 223 ~~i~~~~~~ 231 (241)
+.|.+...-
T Consensus 214 v~i~K~~~~ 222 (239)
T d1xdza_ 214 MVIRKIKNT 222 (239)
T ss_dssp EEEEECSCC
T ss_pred EEEEECCCC
Confidence 777655443
|
| >d1zq9a1 c.66.1.24 (A:36-313) Probable dimethyladenosine transferase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: rRNA adenine dimethylase-like domain: Probable dimethyladenosine transferase species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.33 E-value=1.6e-05 Score=65.91 Aligned_cols=87 Identities=9% Similarity=0.014 Sum_probs=64.1
Q ss_pred HHHHHHhccCCCCCCeEEEecCCCCHHHHHHHHhCCEEEEEcCCCcHHHHHHHHHHHHHcCC--ceEEEEeecCCCCcCc
Q 026274 58 LAEYVWQQRYRFSGANVVELGAGTSLPGLVAAKVGSNVTLTDDSNRIEVLKNMRRVCEMNKL--NCRVMGLTWGFLDASI 135 (241)
Q Consensus 58 L~~~l~~~~~~~~~~~VLElGcGtGl~sl~la~~g~~V~~tD~~~~~~~l~~~~~n~~~n~~--~~~~~~l~w~~~~~~~ 135 (241)
+++.+.+.....++..|||+|+|+|.++..+++.+++|+++++++ .+++.+++....+.. ++.+...|+-....
T Consensus 9 i~~kIv~~~~~~~~d~VlEIGPG~G~LT~~Ll~~~~~v~aiE~D~--~l~~~L~~~~~~~~~~~~~~~i~~D~l~~~~-- 84 (278)
T d1zq9a1 9 IINSIIDKAALRPTDVVLEVGPGTGNMTVKLLEKAKKVVACELDP--RLVAELHKRVQGTPVASKLQVLVGDVLKTDL-- 84 (278)
T ss_dssp HHHHHHHHTCCCTTCEEEEECCTTSTTHHHHHHHSSEEEEEESCH--HHHHHHHHHHTTSTTGGGEEEEESCTTTSCC--
T ss_pred HHHHHHHHhCCCCCCEEEEECCCchHHHHHHHhcCCcEEEEEEcc--chhHHHHHHHhhhccccchhhhHHHHhhhhh--
Confidence 344555555556788999999999999999999999999999995 699999888765543 56677777655432
Q ss_pred CCCCCcEEEEcCCcC
Q 026274 136 FDLNPNIILGADVFY 150 (241)
Q Consensus 136 ~~~~fDlIl~~dvly 150 (241)
..++.|+++=++|
T Consensus 85 --~~~~~vV~NLPY~ 97 (278)
T d1zq9a1 85 --PFFDTCVANLPYQ 97 (278)
T ss_dssp --CCCSEEEEECCGG
T ss_pred --hhhhhhhcchHHH
Confidence 2456777765443
|
| >d1fp2a2 c.66.1.12 (A:109-352) Isoflavone O-methyltransferase {Alfalfa (Medicago sativa) [TaxId: 3879]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Plant O-methyltransferase, C-terminal domain domain: Isoflavone O-methyltransferase species: Alfalfa (Medicago sativa) [TaxId: 3879]
Probab=98.31 E-value=1.9e-06 Score=70.22 Aligned_cols=86 Identities=15% Similarity=0.174 Sum_probs=64.5
Q ss_pred CCeEEEecCCCCHHHHHHHHh--CCEEEEEcCCCcHHHHHHHHHHHHHcCCceEEEEeecCCCCcCcCCCCCcEEEEcCC
Q 026274 71 GANVVELGAGTSLPGLVAAKV--GSNVTLTDDSNRIEVLKNMRRVCEMNKLNCRVMGLTWGFLDASIFDLNPNIILGADV 148 (241)
Q Consensus 71 ~~~VLElGcGtGl~sl~la~~--g~~V~~tD~~~~~~~l~~~~~n~~~n~~~~~~~~l~w~~~~~~~~~~~fDlIl~~dv 148 (241)
..+|||+|||+|..++.+++. +.++++.|.. ++++.+. ...++++...|..+ +. ..+|+++...+
T Consensus 81 ~~~vvDvGGG~G~~~~~l~~~~P~l~~~v~Dlp---~vi~~~~-----~~~rv~~~~gD~f~---~~--p~aD~~~l~~v 147 (244)
T d1fp2a2 81 LESIVDVGGGTGTTAKIICETFPKLKCIVFDRP---QVVENLS-----GSNNLTYVGGDMFT---SI--PNADAVLLKYI 147 (244)
T ss_dssp CSEEEEETCTTSHHHHHHHHHCTTCEEEEEECH---HHHTTCC-----CBTTEEEEECCTTT---CC--CCCSEEEEESC
T ss_pred ceEEEEecCCccHHHHHHHHhCCCCeEEEecCH---HHHHhCc-----ccCceEEEecCccc---CC--CCCcEEEEEee
Confidence 367999999999999999987 4599999995 4654332 12357777766543 22 26899999999
Q ss_pred cCCCcc--HHHHHHHHHHHhhcC
Q 026274 149 FYDASA--FDDLFATITYLLQSS 169 (241)
Q Consensus 149 ly~~~~--~~~ll~~~~~lL~~~ 169 (241)
+++-++ ...+++.+++.|+++
T Consensus 148 LHdw~d~~~~~iL~~~~~al~pg 170 (244)
T d1fp2a2 148 LHNWTDKDCLRILKKCKEAVTND 170 (244)
T ss_dssp GGGSCHHHHHHHHHHHHHHHSGG
T ss_pred cccCChHHHHHHHHHHHHHcCcc
Confidence 987554 457899999999864
|
| >d2ih2a1 c.66.1.27 (A:21-243) DNA methylase TaqI, N-terminal domain {Thermus aquaticus [TaxId: 271]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: DNA methylase TaqI, N-terminal domain domain: DNA methylase TaqI, N-terminal domain species: Thermus aquaticus [TaxId: 271]
Probab=98.20 E-value=7.8e-06 Score=64.52 Aligned_cols=80 Identities=9% Similarity=-0.036 Sum_probs=51.9
Q ss_pred HHHHHHHhccCCCCCCeEEEecCCCCHHHHHHHHh---CCEEEEEcCCCcHHHHHHHHHHHHHcCCceEEEEeecCCCCc
Q 026274 57 ILAEYVWQQRYRFSGANVVELGAGTSLPGLVAAKV---GSNVTLTDDSNRIEVLKNMRRVCEMNKLNCRVMGLTWGFLDA 133 (241)
Q Consensus 57 ~L~~~l~~~~~~~~~~~VLElGcGtGl~sl~la~~---g~~V~~tD~~~~~~~l~~~~~n~~~n~~~~~~~~l~w~~~~~ 133 (241)
-+++++.......++.+|||.|||+|.+...+.+. ..++.+.|+++. ++..+ ....+...++...
T Consensus 6 ~i~~~m~~l~~~~~~~~IlDp~~G~G~fl~~~~~~~~~~~~i~g~ei~~~--~~~~~--------~~~~~~~~~~~~~-- 73 (223)
T d2ih2a1 6 EVVDFMVSLAEAPRGGRVLEPACAHGPFLRAFREAHGTAYRFVGVEIDPK--ALDLP--------PWAEGILADFLLW-- 73 (223)
T ss_dssp HHHHHHHHHCCCCTTCEEEEETCTTCHHHHHHHHHHCSCSEEEEEESCTT--TCCCC--------TTEEEEESCGGGC--
T ss_pred HHHHHHHHhcCCCCcCEEEECCCchHHHHHHHHHhccccceEEeeecCHH--HHhhc--------ccceeeeeehhcc--
Confidence 35677776656667889999999999776666543 347999999973 32211 1223334343322
Q ss_pred CcCCCCCcEEEEcCCc
Q 026274 134 SIFDLNPNIILGADVF 149 (241)
Q Consensus 134 ~~~~~~fDlIl~~dvl 149 (241)
....+||+|+++.+.
T Consensus 74 -~~~~~fd~ii~npP~ 88 (223)
T d2ih2a1 74 -EPGEAFDLILGNPPY 88 (223)
T ss_dssp -CCSSCEEEEEECCCC
T ss_pred -ccccccceecccCcc
Confidence 233589999988775
|
| >d1kyza2 c.66.1.12 (A:120-362) Caffeic acid/5-hydroxyferulic acid 3/5-O-methyltransferase {Alfalfa (Medicago sativa) [TaxId: 3879]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Plant O-methyltransferase, C-terminal domain domain: Caffeic acid/5-hydroxyferulic acid 3/5-O-methyltransferase species: Alfalfa (Medicago sativa) [TaxId: 3879]
Probab=98.19 E-value=3e-06 Score=68.89 Aligned_cols=92 Identities=13% Similarity=0.045 Sum_probs=64.2
Q ss_pred CCeEEEecCCCCHHHHHHHHh--CCEEEEEcCCCcHHHHHHHHHHHHHcCCceEEEEeecCCCCcCcCCCCCcEEEEcCC
Q 026274 71 GANVVELGAGTSLPGLVAAKV--GSNVTLTDDSNRIEVLKNMRRVCEMNKLNCRVMGLTWGFLDASIFDLNPNIILGADV 148 (241)
Q Consensus 71 ~~~VLElGcGtGl~sl~la~~--g~~V~~tD~~~~~~~l~~~~~n~~~n~~~~~~~~l~w~~~~~~~~~~~fDlIl~~dv 148 (241)
..+|||||||+|..++.+++. +.++++.|..+ +++.++ ...++.+...|+.+. .. ..|+++..-+
T Consensus 82 ~~~vvDvGGG~G~~~~~l~~~~P~l~~~v~Dlp~---vi~~~~-----~~~r~~~~~~d~~~~---~P--~ad~~~l~~v 148 (243)
T d1kyza2 82 LKSLVDVGGGTGAVINTIVSKYPTIKGINFDLPH---VIEDAP-----SYPGVEHVGGDMFVS---IP--KADAVFMKWI 148 (243)
T ss_dssp CSEEEEETCTTSHHHHHHHHHCTTSEEEEEECTT---TTTTCC-----CCTTEEEEECCTTTC---CC--CCSCEECSSS
T ss_pred CcEEEEecCCCcHHHHHHHHHCCCCeEEEcccHH---hhhhcc-----cCCceEEeccccccc---CC--CcceEEEEEE
Confidence 468999999999999999997 44999999985 443211 123567777666442 22 3567777888
Q ss_pred cCCC--ccHHHHHHHHHHHhhcCCCeEEEE
Q 026274 149 FYDA--SAFDDLFATITYLLQSSPGSVFIT 176 (241)
Q Consensus 149 ly~~--~~~~~ll~~~~~lL~~~~~~~~~~ 176 (241)
+++- +....+++.+.+.|+++ +.++++
T Consensus 149 lh~~~d~~~~~iL~~~~~al~pg-g~~li~ 177 (243)
T d1kyza2 149 CHDWSDEHCLKFLKNCYEALPDN-GKVIVA 177 (243)
T ss_dssp STTSCHHHHHHHHHHHHHHCCSS-SCEEEE
T ss_pred eecCCHHHHHHHHHHHHHhcCCC-ceEEEE
Confidence 8764 46778899999999843 334443
|
| >d1m6ya2 c.66.1.23 (A:2-114,A:216-294) TM0872, methyltransferase domain {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: MraW-like putative methyltransferases domain: TM0872, methyltransferase domain species: Thermotoga maritima [TaxId: 2336]
Probab=98.18 E-value=1.5e-06 Score=68.33 Aligned_cols=111 Identities=12% Similarity=0.091 Sum_probs=77.2
Q ss_pred CCCCCCeEEEecCCCCHHHHHHHHh--CCEEEEEcCCCcHHHHHHHHHHHHHcCCceEEEEeecCCCCc---CcCCCCCc
Q 026274 67 YRFSGANVVELGAGTSLPGLVAAKV--GSNVTLTDDSNRIEVLKNMRRVCEMNKLNCRVMGLTWGFLDA---SIFDLNPN 141 (241)
Q Consensus 67 ~~~~~~~VLElGcGtGl~sl~la~~--g~~V~~tD~~~~~~~l~~~~~n~~~n~~~~~~~~l~w~~~~~---~~~~~~fD 141 (241)
...++..+||.+||+|-.+..+++. +.+|+++|.++ +|++.++++....+.++.+...++.+... .....+||
T Consensus 20 ~~~~~~~~lD~t~G~Gghs~~il~~~~~~~vi~~D~d~--~~l~~a~~~l~~~~~r~~~~~~~f~~~~~~~~~~~~~~vd 97 (192)
T d1m6ya2 20 KPEDEKIILDCTVGEGGHSRAILEHCPGCRIIGIDVDS--EVLRIAEEKLKEFSDRVSLFKVSYREADFLLKTLGIEKVD 97 (192)
T ss_dssp CCCTTCEEEETTCTTSHHHHHHHHHCTTCEEEEEESCH--HHHHHHHHHTGGGTTTEEEEECCGGGHHHHHHHTTCSCEE
T ss_pred CCCCCCEEEEecCCCcHHHHHHHhcCCCCeEEEeechH--HHHHHHHHhhccccccccchhHHHhhHHHHHHHcCCCCcc
Confidence 3457789999999999888887775 45999999995 79999999988777778777765544321 11235899
Q ss_pred EEEEcCCc---------CCCccHHHHHHHHHHHhhcCCCeEEEEEeec
Q 026274 142 IILGADVF---------YDASAFDDLFATITYLLQSSPGSVFITTYHN 180 (241)
Q Consensus 142 lIl~~dvl---------y~~~~~~~ll~~~~~lL~~~~~~~~~~~~~~ 180 (241)
-|+..=-+ -........+....++|++ +|.++++.++.
T Consensus 98 gIl~DlGvSs~Qld~~~r~~~~~~~~L~~a~~~Lk~-gG~l~ii~f~s 144 (192)
T d1m6ya2 98 GILMDLGVSTYQLKGENRELENLKEFLKKAEDLLNP-GGRIVVISFHS 144 (192)
T ss_dssp EEEEECSCCHHHHHTSHTHHHHHHHHHHHGGGGEEE-EEEEEEEESSH
T ss_pred eeeeccchhHhhhhhhhccchhHHHHHHHHHHhcCC-CCeeeeecccc
Confidence 88753212 1224566777788888874 23455566554
|
| >d1yuba_ c.66.1.24 (A:) rRNA adenine dimethylase {Streptococcus pneumoniae, Ermam [TaxId: 1313]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: rRNA adenine dimethylase-like domain: rRNA adenine dimethylase species: Streptococcus pneumoniae, Ermam [TaxId: 1313]
Probab=98.14 E-value=1.4e-07 Score=77.22 Aligned_cols=88 Identities=15% Similarity=0.126 Sum_probs=57.9
Q ss_pred HHHHhccCCCCCCeEEEecCCCCHHHHHHHHhCCEEEEEcCCCcHHHHHHHHHHHHHcCCceEEEEeecCCCCcCcCCCC
Q 026274 60 EYVWQQRYRFSGANVVELGAGTSLPGLVAAKVGSNVTLTDDSNRIEVLKNMRRVCEMNKLNCRVMGLTWGFLDASIFDLN 139 (241)
Q Consensus 60 ~~l~~~~~~~~~~~VLElGcGtGl~sl~la~~g~~V~~tD~~~~~~~l~~~~~n~~~n~~~~~~~~l~w~~~~~~~~~~~ 139 (241)
+.+.+.....++.+|||||||+|.++..+++.+.+|+++|+++. +++.++++... ..++++...|..+.. .....
T Consensus 19 ~kIv~~~~~~~~d~VLEIGpG~G~LT~~L~~~~~~v~aIE~D~~--l~~~l~~~~~~-~~n~~ii~~D~l~~~--~~~~~ 93 (245)
T d1yuba_ 19 NQIIKQLNLKETDTVYEIGTGKGHLTTKLAKISKQVTSIELDSH--LFNLSSEKLKL-NTRVTLIHQDILQFQ--FPNKQ 93 (245)
T ss_dssp HHHHHHCCCCSSEEEEECSCCCSSCSHHHHHHSSEEEESSSSCS--SSSSSSCTTTT-CSEEEECCSCCTTTT--CCCSS
T ss_pred HHHHHhcCCCCCCeEEEECCCccHHHHHHHhhcCceeEeeeccc--chhhhhhhhhh-ccchhhhhhhhhccc--cccce
Confidence 33444444556789999999999999999999999999999973 66666554432 235666655554432 22234
Q ss_pred CcEEEEcCCcCCCc
Q 026274 140 PNIILGADVFYDAS 153 (241)
Q Consensus 140 fDlIl~~dvly~~~ 153 (241)
++.|+++ .-|+..
T Consensus 94 ~~~vv~N-LPY~Is 106 (245)
T d1yuba_ 94 RYKIVGN-IPYHLS 106 (245)
T ss_dssp EEEEEEE-CCSSSC
T ss_pred eeeEeee-eehhhh
Confidence 5556654 446643
|
| >d2dula1 c.66.1.58 (A:3-377) N(2),N(2)-dimethylguanosine tRNA methyltransferase Trm1 {Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: TRM1-like domain: N(2),N(2)-dimethylguanosine tRNA methyltransferase Trm1 species: Pyrococcus horikoshii [TaxId: 53953]
Probab=98.14 E-value=3.4e-06 Score=72.93 Aligned_cols=100 Identities=15% Similarity=0.012 Sum_probs=70.2
Q ss_pred CCCCeEEEecCCCCHHHHHHHH-hCC-EEEEEcCCCcHHHHHHHHHHHHHcCCce----------------EEEEeecCC
Q 026274 69 FSGANVVELGAGTSLPGLVAAK-VGS-NVTLTDDSNRIEVLKNMRRVCEMNKLNC----------------RVMGLTWGF 130 (241)
Q Consensus 69 ~~~~~VLElGcGtGl~sl~la~-~g~-~V~~tD~~~~~~~l~~~~~n~~~n~~~~----------------~~~~l~w~~ 130 (241)
+++++|||..||||+-|+-.|+ .|+ +|++.|+|+ ++++.+++|++.|+... .+...|+..
T Consensus 44 ~~~~~vLD~~sasG~rsiRya~E~~~~~V~~nDis~--~A~~~i~~N~~lN~~~~~~~~~~~~~~~~~~~~~~~~~Da~~ 121 (375)
T d2dula1 44 LNPKIVLDALSATGIRGIRFALETPAEEVWLNDISE--DAYELMKRNVMLNFDGELRESKGRAILKGEKTIVINHDDANR 121 (375)
T ss_dssp HCCSEEEESSCTTSHHHHHHHHHSSCSEEEEEESCH--HHHHHHHHHHHHHCCSCCEECSSEEEEESSSEEEEEESCHHH
T ss_pred hCCCEEEEcCCCccHHHHHHHHhCCCCEEEEecCCH--HHHHHHHHHHHhcCccccccccccccccccceeEeehhhhhh
Confidence 3678999999999999996665 566 899999995 79999999999998631 122222211
Q ss_pred CCcCcCCCCCcEEEEcCCcCCCccHHHHHHHHHHHhhcCCCeEEEEE
Q 026274 131 LDASIFDLNPNIILGADVFYDASAFDDLFATITYLLQSSPGSVFITT 177 (241)
Q Consensus 131 ~~~~~~~~~fDlIl~~dvly~~~~~~~ll~~~~~lL~~~~~~~~~~~ 177 (241)
.. ......||+|..- + | ....++++..-+.++ .+|++.++
T Consensus 122 ~~-~~~~~~fDvIDiD-P-f--Gs~~pfldsAi~a~~--~~Gll~vT 161 (375)
T d2dula1 122 LM-AERHRYFHFIDLD-P-F--GSPMEFLDTALRSAK--RRGILGVT 161 (375)
T ss_dssp HH-HHSTTCEEEEEEC-C-S--SCCHHHHHHHHHHEE--EEEEEEEE
T ss_pred hh-HhhcCcCCcccCC-C-C--CCcHHHHHHHHHHhc--cCCEEEEE
Confidence 11 0113479998864 3 3 456788888888887 45666555
|
| >d2okca1 c.66.1.45 (A:9-433) Type I restriction enzyme StySJI M protein {Bacteroides thetaiotaomicron [TaxId: 818]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: N-6 DNA Methylase-like domain: Type I restriction enzyme StySJI M protein species: Bacteroides thetaiotaomicron [TaxId: 818]
Probab=98.07 E-value=4.2e-05 Score=66.77 Aligned_cols=141 Identities=11% Similarity=0.052 Sum_probs=88.6
Q ss_pred HHHHHHhccCCCCCCeEEEecCCCCHHHHHHHHh---------------CCEEEEEcCCCcHHHHHHHHHHHHHcCCceE
Q 026274 58 LAEYVWQQRYRFSGANVVELGAGTSLPGLVAAKV---------------GSNVTLTDDSNRIEVLKNMRRVCEMNKLNCR 122 (241)
Q Consensus 58 L~~~l~~~~~~~~~~~VLElGcGtGl~sl~la~~---------------g~~V~~tD~~~~~~~l~~~~~n~~~n~~~~~ 122 (241)
+++++........+.+|+|-.||||-+-+.+.+. ...+.+.|+++ .+...++.|...++....
T Consensus 150 Iv~~mv~ll~~~~~~~IlDPacGsG~fL~~a~~~~~~~~~~~~~~~~~~~~~l~g~E~~~--~~~~la~~n~~l~g~~~~ 227 (425)
T d2okca1 150 LIQAMVDCINPQMGETVCDPACGTGGFLLTAYDYMKGQSASKEKRDFLRDKALHGVDNTP--LVVTLASMNLYLHGIGTD 227 (425)
T ss_dssp HHHHHHHHHCCCTTCCEEETTCTTCHHHHHHHHHHHTCC-CCHHHHHHHHTTEEEEESCH--HHHHHHHHHHHHTTCCSS
T ss_pred hhHhhheeccCcccceeeccccccCccHHHHHHHHHhhccchhhhhhhhhhhhhhhhccH--HHHHHHHhhhhhcCCccc
Confidence 4566655444556789999999999777776653 12489999995 688888889888776422
Q ss_pred EEEeecCCCCcCcCCCCCcEEEEcCCcCCC-----------------ccHHHHHHHHHHHhhcCCCeEEEEEeec--cCc
Q 026274 123 VMGLTWGFLDASIFDLNPNIILGADVFYDA-----------------SAFDDLFATITYLLQSSPGSVFITTYHN--RSG 183 (241)
Q Consensus 123 ~~~l~w~~~~~~~~~~~fDlIl~~dvly~~-----------------~~~~~ll~~~~~lL~~~~~~~~~~~~~~--r~~ 183 (241)
...+..++........+||+|++++++-.. ...-.++..+.++|++++...++++... +..
T Consensus 228 ~~~i~~~d~l~~~~~~~fD~Ii~NPPfg~~~~~~~~~~~~~~~~~~~~~~~~Fi~~~~~~Lk~~G~~~iI~p~~~L~~~~ 307 (425)
T d2okca1 228 RSPIVCEDSLEKEPSTLVDVILANPPFGTRPAGSVDINRPDFYVETKNNQLNFLQHMMLMLKTGGRAAVVLPDNVLFEAG 307 (425)
T ss_dssp CCSEEECCTTTSCCSSCEEEEEECCCSSCCCTTCCCCCCTTSSSCCSCHHHHHHHHHHHHEEEEEEEEEEEEHHHHHCST
T ss_pred cceeecCchhhhhcccccceEEecCCCCCCccccchhhhhhcccccccHHHHHHHHHHHhcCCCCeEEEEechHHhhhhh
Confidence 112222333333334589999999988321 1134577888889986555566666321 332
Q ss_pred --hhHHHHHHHHcCCEEEE
Q 026274 184 --HHLIEFLMVKWGLKCVK 200 (241)
Q Consensus 184 --~~~~~~~~~~~g~~~~~ 200 (241)
....+.+.+...+....
T Consensus 308 ~~~~iR~~Ll~~~~i~aIi 326 (425)
T d2okca1 308 AGETIRKRLLQDFNLHTIL 326 (425)
T ss_dssp HHHHHHHHHHHHEEEEEEE
T ss_pred hHHHHHHHHHHhcchhHhh
Confidence 23455566666554443
|
| >d1uira_ c.66.1.17 (A:) Spermidine synthase {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Spermidine synthase domain: Spermidine synthase species: Thermus thermophilus [TaxId: 274]
Probab=97.99 E-value=6.2e-06 Score=69.52 Aligned_cols=102 Identities=12% Similarity=0.085 Sum_probs=71.9
Q ss_pred CCCeEEEecCCCCHHHHHHHHhC--CEEEEEcCCCcHHHHHHHHHHHHH------cCCceEEEEeecCCCCcCcCCCCCc
Q 026274 70 SGANVVELGAGTSLPGLVAAKVG--SNVTLTDDSNRIEVLKNMRRVCEM------NKLNCRVMGLTWGFLDASIFDLNPN 141 (241)
Q Consensus 70 ~~~~VLElGcGtGl~sl~la~~g--~~V~~tD~~~~~~~l~~~~~n~~~------n~~~~~~~~l~w~~~~~~~~~~~fD 141 (241)
..++||.||.|.|.....+.+.. .+|+++|+++ ++++.+++.... +..++++...|+.+.... .+.+||
T Consensus 77 ~pk~VLiiG~G~G~~~~~ll~~~~~~~v~~VEiD~--~Vi~~a~~~f~~~~~~~~~d~rv~i~~~Da~~~l~~-~~~~yD 153 (312)
T d1uira_ 77 EPKRVLIVGGGEGATLREVLKHPTVEKAVMVDIDG--ELVEVAKRHMPEWHQGAFDDPRAVLVIDDARAYLER-TEERYD 153 (312)
T ss_dssp CCCEEEEEECTTSHHHHHHTTSTTCCEEEEEESCH--HHHHHHHHHCHHHHTTGGGCTTEEEEESCHHHHHHH-CCCCEE
T ss_pred CcceEEEeCCCchHHHHHHHhcCCcceEEEecCCH--HHHHHHHhcCcccccCccCCCceEEEEchHHHHhhh-cCCccc
Confidence 45799999999998888887753 4899999995 799999886532 234566666666554322 345899
Q ss_pred EEEE--cCCcCCCc-----cHHHHHHHHHHHhhcCCCeEEEE
Q 026274 142 IILG--ADVFYDAS-----AFDDLFATITYLLQSSPGSVFIT 176 (241)
Q Consensus 142 lIl~--~dvly~~~-----~~~~ll~~~~~lL~~~~~~~~~~ 176 (241)
+|+. .|...... .-..+++.+++.|+ ++|++++
T Consensus 154 vIi~D~~dp~~~~~~~~~L~t~eF~~~~~~~L~--p~Gvlv~ 193 (312)
T d1uira_ 154 VVIIDLTDPVGEDNPARLLYTVEFYRLVKAHLN--PGGVMGM 193 (312)
T ss_dssp EEEEECCCCBSTTCGGGGGSSHHHHHHHHHTEE--EEEEEEE
T ss_pred EEEEeCCCcccccchhhhhhhHHHHHHHHHhcC--CCceEEE
Confidence 9993 44443221 12578899999998 6676665
|
| >d1mjfa_ c.66.1.17 (A:) Putative spermidine synthetase PF0127 (SpeE) {Archaeon Pyrococcus furiosus [TaxId: 2261]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Spermidine synthase domain: Putative spermidine synthetase PF0127 (SpeE) species: Archaeon Pyrococcus furiosus [TaxId: 2261]
Probab=97.87 E-value=9.4e-06 Score=67.23 Aligned_cols=102 Identities=9% Similarity=0.102 Sum_probs=68.7
Q ss_pred CCCeEEEecCCCCHHHHHHHHhCC-EEEEEcCCCcHHHHHHHHHHHHHc-----------CCceEEEEeecCCCCcCcCC
Q 026274 70 SGANVVELGAGTSLPGLVAAKVGS-NVTLTDDSNRIEVLKNMRRVCEMN-----------KLNCRVMGLTWGFLDASIFD 137 (241)
Q Consensus 70 ~~~~VLElGcGtGl~sl~la~~g~-~V~~tD~~~~~~~l~~~~~n~~~n-----------~~~~~~~~l~w~~~~~~~~~ 137 (241)
+.++||-||+|.|.....+.+... +|+++|+++ ++++.+++-...+ ..++++...|....... .
T Consensus 72 ~p~~vLiiG~G~G~~~~~~l~~~~~~v~~VEiD~--~Vi~~a~~~f~~~~~~~~~~~~~~d~rv~i~~~Da~~~l~~--~ 147 (276)
T d1mjfa_ 72 KPKRVLVIGGGDGGTVREVLQHDVDEVIMVEIDE--DVIMVSKDLIKIDNGLLEAMLNGKHEKAKLTIGDGFEFIKN--N 147 (276)
T ss_dssp CCCEEEEEECTTSHHHHHHTTSCCSEEEEEESCH--HHHHHHHHHTCTTTTHHHHHHTTCCSSEEEEESCHHHHHHH--C
T ss_pred CCceEEEecCCchHHHHHHHHhCCceEEEecCCH--HHHHHHHHhhhhccchhhhhhccCCCCceEEEChHHHHHhc--c
Confidence 457999999999988887777654 899999995 7999888644322 23456665554332221 3
Q ss_pred CCCcEEEEcCCcCCCcc-----HHHHHHHHHHHhhcCCCeEEEEEe
Q 026274 138 LNPNIILGADVFYDASA-----FDDLFATITYLLQSSPGSVFITTY 178 (241)
Q Consensus 138 ~~fDlIl~~dvly~~~~-----~~~ll~~~~~lL~~~~~~~~~~~~ 178 (241)
.+||+|+. |+...... -..+++.+++.|+ ++|++++-.
T Consensus 148 ~~yDvIi~-D~~~~~~~~~~L~t~eF~~~~~~~L~--~~Gv~v~q~ 190 (276)
T d1mjfa_ 148 RGFDVIIA-DSTDPVGPAKVLFSEEFYRYVYDALN--NPGIYVTQA 190 (276)
T ss_dssp CCEEEEEE-ECCCCC-----TTSHHHHHHHHHHEE--EEEEEEEEE
T ss_pred CCCCEEEE-eCCCCCCCcccccCHHHHHhhHhhcC--CCceEEEec
Confidence 58999984 43322111 2578899999998 677766543
|
| >d1qyra_ c.66.1.24 (A:) High level kasugamycin resistance protein KsgA {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: rRNA adenine dimethylase-like domain: High level kasugamycin resistance protein KsgA species: Escherichia coli [TaxId: 562]
Probab=97.80 E-value=7.6e-06 Score=66.93 Aligned_cols=69 Identities=9% Similarity=0.023 Sum_probs=50.4
Q ss_pred HHHHHhccCCCCCCeEEEecCCCCHHHHHHHHhCCEEEEEcCCCcHHHHHHHHHHHHHcCCceEEEEeecCC
Q 026274 59 AEYVWQQRYRFSGANVVELGAGTSLPGLVAAKVGSNVTLTDDSNRIEVLKNMRRVCEMNKLNCRVMGLTWGF 130 (241)
Q Consensus 59 ~~~l~~~~~~~~~~~VLElGcGtGl~sl~la~~g~~V~~tD~~~~~~~l~~~~~n~~~n~~~~~~~~l~w~~ 130 (241)
++.+.......++..|||+|||+|.++..+++.+.+|+++|+++ .+++.+++.... ..++.+...|.-+
T Consensus 10 ~~~Iv~~~~~~~~d~vlEIGpG~G~LT~~Ll~~~~~v~aiEiD~--~l~~~L~~~~~~-~~~~~ii~~D~l~ 78 (252)
T d1qyra_ 10 IDSIVSAINPQKGQAMVEIGPGLAALTEPVGERLDQLTVIELDR--DLAARLQTHPFL-GPKLTIYQQDAMT 78 (252)
T ss_dssp HHHHHHHHCCCTTCCEEEECCTTTTTHHHHHTTCSCEEEECCCH--HHHHHHHTCTTT-GGGEEEECSCGGG
T ss_pred HHHHHHhcCCCCCCEEEEECCCchHHHHHHHccCCceEEEEecc--chhHHHHHHhhh-ccchhHHhhhhhh
Confidence 34444444556788999999999999999999999999999995 688888764332 2356666555443
|
| >d1inla_ c.66.1.17 (A:) Spermidine synthase {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Spermidine synthase domain: Spermidine synthase species: Thermotoga maritima [TaxId: 2336]
Probab=97.63 E-value=5.2e-05 Score=63.16 Aligned_cols=104 Identities=13% Similarity=0.091 Sum_probs=71.3
Q ss_pred CCCeEEEecCCCCHHHHHHHHhC--CEEEEEcCCCcHHHHHHHHHHHHHc-----CCceEEEEeecCCCCcCcCCCCCcE
Q 026274 70 SGANVVELGAGTSLPGLVAAKVG--SNVTLTDDSNRIEVLKNMRRVCEMN-----KLNCRVMGLTWGFLDASIFDLNPNI 142 (241)
Q Consensus 70 ~~~~VLElGcGtGl~sl~la~~g--~~V~~tD~~~~~~~l~~~~~n~~~n-----~~~~~~~~l~w~~~~~~~~~~~fDl 142 (241)
..++||-||.|.|.+.-.+.+.. .+|+++|+++ ++++.+++-...+ ..++++...|....... .+.+||+
T Consensus 89 ~pk~VLiiGgG~G~~~r~~l~~~~~~~i~~VEIDp--~Vi~~a~~~~~~~~~~~~d~rv~v~~~Da~~~l~~-~~~~yDv 165 (295)
T d1inla_ 89 NPKKVLIIGGGDGGTLREVLKHDSVEKAILCEVDG--LVIEAARKYLKQTSCGFDDPRAEIVIANGAEYVRK-FKNEFDV 165 (295)
T ss_dssp SCCEEEEEECTTCHHHHHHTTSTTCSEEEEEESCH--HHHHHHHHHCHHHHGGGGCTTEEEEESCHHHHGGG-CSSCEEE
T ss_pred CCceEEEecCCchHHHHHHHhcCCCceEEEecCCH--HHHHHHHHHHHhhcccccCCCcEEEhhhHHHHHhc-CCCCCCE
Confidence 45799999999998888887753 4899999995 7999888755432 34566666665544332 3458999
Q ss_pred EEEc--CCcCCC---ccHHHHHHHHHHHhhcCCCeEEEEEe
Q 026274 143 ILGA--DVFYDA---SAFDDLFATITYLLQSSPGSVFITTY 178 (241)
Q Consensus 143 Il~~--dvly~~---~~~~~ll~~~~~lL~~~~~~~~~~~~ 178 (241)
|+.- |....+ -.-..+++.+++.|+ ++|++++-.
T Consensus 166 Ii~D~~dp~~~~~~~L~t~efy~~~~~~L~--~~Gi~v~q~ 204 (295)
T d1inla_ 166 IIIDSTDPTAGQGGHLFTEEFYQACYDALK--EDGVFSAET 204 (295)
T ss_dssp EEEEC----------CCSHHHHHHHHHHEE--EEEEEEEEC
T ss_pred EEEcCCCCCcCchhhhccHHHHHHHHhhcC--CCcEEEEec
Confidence 9942 222111 124688999999998 678777654
|
| >d2oyra1 c.66.1.55 (A:1-250) Hypothetical protein YhiQ {Shigella flexneri [TaxId: 623]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: YhiQ-like domain: Hypothetical protein YhiQ species: Shigella flexneri [TaxId: 623]
Probab=97.47 E-value=0.00014 Score=58.95 Aligned_cols=91 Identities=14% Similarity=0.140 Sum_probs=59.7
Q ss_pred CeEEEecCCCCHHHHHHHHhCCEEEEEcCCCcHHHHHHHHHHHHH---cCC-------ceEEEEeecCCCCcCcCCCCCc
Q 026274 72 ANVVELGAGTSLPGLVAAKVGSNVTLTDDSNRIEVLKNMRRVCEM---NKL-------NCRVMGLTWGFLDASIFDLNPN 141 (241)
Q Consensus 72 ~~VLElGcGtGl~sl~la~~g~~V~~tD~~~~~~~l~~~~~n~~~---n~~-------~~~~~~l~w~~~~~~~~~~~fD 141 (241)
.+|||+-||.|.-++.+|..|++|++++.++ .+...++++++. +.. ++++...|-.+.... ...+||
T Consensus 90 ~~VlD~TaGlG~Da~vlA~~G~~V~~iEr~p--~l~~ll~d~l~r~~~~~~~~~~~~~ri~li~~Ds~~~L~~-~~~~~D 166 (250)
T d2oyra1 90 PDVVDATAGLGRDAFVLASVGCRVRMLERNP--VVAALLDDGLARGYADAEIGGWLQERLQLIHASSLTALTD-ITPRPQ 166 (250)
T ss_dssp CCEEETTCTTCHHHHHHHHHTCCEEEEECCH--HHHHHHHHHHHHHHHCTTTHHHHHHHEEEEESCHHHHSTT-CSSCCS
T ss_pred CEEEECCCcccHHHHHHHhCCCEEEEEccCH--HHHHHHHHHHHHHHhCchhHHHHhhhheeecCcHHHHHhc-cCCCCC
Confidence 4899999999999999999999999999995 455555555432 221 455665543333222 245799
Q ss_pred EEEEcCCcCCCccHHH----HHHHHHHHh
Q 026274 142 IILGADVFYDASAFDD----LFATITYLL 166 (241)
Q Consensus 142 lIl~~dvly~~~~~~~----ll~~~~~lL 166 (241)
+|+. |++|....-.. -+..++.+.
T Consensus 167 vIYl-DPMFp~~~Ksa~~kk~m~~l~~l~ 194 (250)
T d2oyra1 167 VVYL-DPMFPHKQKSALVKKEMRVFQSLV 194 (250)
T ss_dssp EEEE-CCCCCCCCC-----HHHHHHHHHS
T ss_pred EEEE-CCCCccccccccchhHHHHHHhhc
Confidence 9996 88886443333 344445543
|
| >d2ar0a1 c.66.1.45 (A:6-529) M.EcoKI {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: N-6 DNA Methylase-like domain: M.EcoKI species: Escherichia coli [TaxId: 562]
Probab=97.46 E-value=0.00097 Score=59.46 Aligned_cols=167 Identities=11% Similarity=-0.026 Sum_probs=98.0
Q ss_pred HHHHHHHhccCCCCCCeEEEecCCCCHHHHHHHHh--------------------CCEEEEEcCCCcHHHHHHHHHHHHH
Q 026274 57 ILAEYVWQQRYRFSGANVVELGAGTSLPGLVAAKV--------------------GSNVTLTDDSNRIEVLKNMRRVCEM 116 (241)
Q Consensus 57 ~L~~~l~~~~~~~~~~~VLElGcGtGl~sl~la~~--------------------g~~V~~tD~~~~~~~l~~~~~n~~~ 116 (241)
-+++++........+.+|+|-.||||-+-+.+.+. ...+.+.|+++ .+...++.|...
T Consensus 151 ~Iv~~mv~ll~~~~~~~i~DPacGsG~fL~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~G~E~~~--~~~~la~~nl~l 228 (524)
T d2ar0a1 151 PLIKTIIHLLKPQPREVVQDPAAGTAGFLIEADRYVKSQTNDLDDLDGDTQDFQIHRAFIGLELVP--GTRRLALMNCLL 228 (524)
T ss_dssp HHHHHHHHHHCCCTTCCEEETTCTTTHHHHHHHHHHHTTTTTTTTSCHHHHHHHHHTSEEEEESCH--HHHHHHHHHHHT
T ss_pred chhHhhhhcccCccchhhcchhhhcchhhHHHHHHHHHhcCcccccchhHHHHHHHhhhhhhccCH--HHHHHHHHHHHh
Confidence 35567666555566789999999999776665542 12589999995 688888888887
Q ss_pred cCCceEEE---EeecCCCCc--CcCCCCCcEEEEcCCcCCCc--------------cHHHHHHHHHHHhhcCCCeEEEEE
Q 026274 117 NKLNCRVM---GLTWGFLDA--SIFDLNPNIILGADVFYDAS--------------AFDDLFATITYLLQSSPGSVFITT 177 (241)
Q Consensus 117 n~~~~~~~---~l~w~~~~~--~~~~~~fDlIl~~dvly~~~--------------~~~~ll~~~~~lL~~~~~~~~~~~ 177 (241)
++...... .+.+++... .....+||+|++++++-... ..-.++..+.++|+++|...++++
T Consensus 229 ~~~~~~i~~~~~~~~~~~l~~d~~~~~kfD~Ii~NPPfg~~~~~~~~~~~~~~~~~~~~~Fi~~~l~~Lk~gGr~aiIlP 308 (524)
T d2ar0a1 229 HDIEGNLDHGGAIRLGNTLGSDGENLPKAHIVATNPPFGSAAGTNITRTFVHPTSNKQLCFMQHIIETLHPGGRAAVVVP 308 (524)
T ss_dssp TTCCCBGGGTBSEEESCTTSHHHHTSCCEEEEEECCCCTTCSSCCCCSCCSSCCSCHHHHHHHHHHHHEEEEEEEEEEEE
T ss_pred hcccccccccchhhhhhhhhhcccccccceeEEecCCccccccccchhhhccccccccHHHHHHHHHhccccCcEEEEEe
Confidence 77532110 011122111 11124799999999884321 123477788888986655566666
Q ss_pred eec--cCc--hhHHHHHHHHcCCEEEEEecCCCCCCcccccccCCCeEEEEEEeccCC
Q 026274 178 YHN--RSG--HHLIEFLMVKWGLKCVKLVDGFSFLPHYKARELNGNIQLAEIVLNHES 231 (241)
Q Consensus 178 ~~~--r~~--~~~~~~~~~~~g~~~~~i~~~~~~~p~~~~~~~~~~~~l~~i~~~~~~ 231 (241)
... +.. ....+.++++..+......- +... ..-.....++-+++....
T Consensus 309 ~~~Lf~~~~~~~iR~~Ll~~~~i~aII~LP-----~~~F-~~t~i~t~Il~l~K~k~~ 360 (524)
T d2ar0a1 309 DNVLFEGGKGTDIRRDLMDKCHLHTILRLP-----TGIF-YAQGVKTNVLFFTKGTVA 360 (524)
T ss_dssp HHHHHCCTHHHHHHHHHHHHEEEEEEEECC-----SSCS-SSCSCCEEEEEEEEBCSS
T ss_pred hHHhhhhhhhHHHHHHHHHcCCceEEEECC-----CCcC-CCCCCCeEEEEEECCCCC
Confidence 332 333 23455666766554443211 1111 122346777777765543
|
| >d1sqga2 c.66.1.38 (A:145-428) Ribosomal RNA small subunit methyltransferase B, RsmB (Sun, Fmu/Fmv), C-terminal domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: NOL1/NOP2/sun domain: Ribosomal RNA small subunit methyltransferase B, RsmB (Sun, Fmu/Fmv), C-terminal domain species: Escherichia coli [TaxId: 562]
Probab=97.44 E-value=0.00064 Score=55.98 Aligned_cols=141 Identities=11% Similarity=0.046 Sum_probs=84.6
Q ss_pred ccHHHHHHHHHhccCCCCCCeEEEecCCCCHHHHHHHHhCC--EEEEEcCCCcHHHHHHHHHHHHHcCCceEEEEeecCC
Q 026274 53 PCSVILAEYVWQQRYRFSGANVVELGAGTSLPGLVAAKVGS--NVTLTDDSNRIEVLKNMRRVCEMNKLNCRVMGLTWGF 130 (241)
Q Consensus 53 ~~s~~L~~~l~~~~~~~~~~~VLElGcGtGl~sl~la~~g~--~V~~tD~~~~~~~l~~~~~n~~~n~~~~~~~~l~w~~ 130 (241)
.+|.+.+..+ ...+|.+|||+.||.|-=++.++..+. .|++.|.++. -++.+++|++..+.+......+-..
T Consensus 89 ~sS~l~~~~L----~~~~g~~vLD~CAaPGgKt~~la~l~~~~~i~a~d~~~~--R~~~l~~~~~r~g~~~~~~~~~~~~ 162 (284)
T d1sqga2 89 ASAQGCMTWL----APQNGEHILDLCAAPGGKTTHILEVAPEAQVVAVDIDEQ--RLSRVYDNLKRLGMKATVKQGDGRY 162 (284)
T ss_dssp HHHHTHHHHH----CCCTTCEEEEESCTTCHHHHHHHHHCTTCEEEEEESSTT--THHHHHHHHHHTTCCCEEEECCTTC
T ss_pred cccccccccc----CccccceeEeccCccccchhhhhhhhhhhhhhhhhcchh--hhhhHhhhhhcccccceeeeccccc
Confidence 3444444443 234678999999999988888887753 7999999974 7888899998888865443332211
Q ss_pred CCcCcCCCCCcEEEEcC------CcCC-C--------c-------cHHHHHHHHHHHhhcCCCeEEEEEe--eccCchhH
Q 026274 131 LDASIFDLNPNIILGAD------VFYD-A--------S-------AFDDLFATITYLLQSSPGSVFITTY--HNRSGHHL 186 (241)
Q Consensus 131 ~~~~~~~~~fDlIl~~d------vly~-~--------~-------~~~~ll~~~~~lL~~~~~~~~~~~~--~~r~~~~~ 186 (241)
........+||.|+.-- ++-. + . ....+++...++|++ +|.++|..+ ........
T Consensus 163 ~~~~~~~~~fd~IL~DaPCSg~G~~rr~p~~~~~~~~~~~~~l~~lQ~~iL~~a~~~lk~-gG~lvYsTCS~~~~ENE~v 241 (284)
T d1sqga2 163 PSQWCGEQQFDRILLDAPCSATGVIRRHPDIKWLRRDRDIPELAQLQSEILDAIWPHLKT-GGTLVYATCSVLPEENSLQ 241 (284)
T ss_dssp THHHHTTCCEEEEEEECCCCCGGGTTTCTTHHHHCCTTHHHHHHHHHHHHHHHHGGGEEE-EEEEEEEESCCCGGGTHHH
T ss_pred cchhcccccccEEEEeccccccCccccccchhhccccchhhHHHHHHHHHHHHHHHhcCC-CceEEEeeecCchhhCHHH
Confidence 11122345799998422 2211 1 1 244555666666763 334555443 33444555
Q ss_pred HHHHHHH-cCCEEEE
Q 026274 187 IEFLMVK-WGLKCVK 200 (241)
Q Consensus 187 ~~~~~~~-~g~~~~~ 200 (241)
++.++++ -+|+...
T Consensus 242 v~~~l~~~~~~~~~~ 256 (284)
T d1sqga2 242 IKAFLQRTADAELCE 256 (284)
T ss_dssp HHHHHHHCTTCEECS
T ss_pred HHHHHHhCCCcEEec
Confidence 6666655 4666543
|
| >d1iy9a_ c.66.1.17 (A:) Spermidine synthase {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Spermidine synthase domain: Spermidine synthase species: Bacillus subtilis [TaxId: 1423]
Probab=97.42 E-value=0.00015 Score=59.63 Aligned_cols=104 Identities=15% Similarity=0.099 Sum_probs=71.4
Q ss_pred CCCeEEEecCCCCHHHHHHHHh-C-CEEEEEcCCCcHHHHHHHHHHHHH-----cCCceEEEEeecCCCCcCcCCCCCcE
Q 026274 70 SGANVVELGAGTSLPGLVAAKV-G-SNVTLTDDSNRIEVLKNMRRVCEM-----NKLNCRVMGLTWGFLDASIFDLNPNI 142 (241)
Q Consensus 70 ~~~~VLElGcGtGl~sl~la~~-g-~~V~~tD~~~~~~~l~~~~~n~~~-----n~~~~~~~~l~w~~~~~~~~~~~fDl 142 (241)
..++||-||-|.|.....+.+. + .+|+++|+++ ++++.+++-... +..++++...|....... .+.+||+
T Consensus 75 ~p~~vLiiGgG~G~~~~~~l~~~~~~~i~~VEID~--~Vi~~a~~~~~~~~~~~~d~r~~i~~~D~~~~l~~-~~~~yDv 151 (274)
T d1iy9a_ 75 NPEHVLVVGGGDGGVIREILKHPSVKKATLVDIDG--KVIEYSKKFLPSIAGKLDDPRVDVQVDDGFMHIAK-SENQYDV 151 (274)
T ss_dssp SCCEEEEESCTTCHHHHHHTTCTTCSEEEEEESCH--HHHHHHHHHCHHHHTTTTSTTEEEEESCSHHHHHT-CCSCEEE
T ss_pred CcceEEecCCCCcHHHHHHHhcCCcceEEEecCCH--HHHHHHHHhChhhcccccCCCeEEEechHHHHHhh-cCCCCCE
Confidence 4579999999999998888875 3 4899999995 799988876533 234566665554333222 2458999
Q ss_pred EEEc--CCcCCCc--cHHHHHHHHHHHhhcCCCeEEEEEe
Q 026274 143 ILGA--DVFYDAS--AFDDLFATITYLLQSSPGSVFITTY 178 (241)
Q Consensus 143 Il~~--dvly~~~--~~~~ll~~~~~lL~~~~~~~~~~~~ 178 (241)
|+.- |...... .-..+++.+++.|+ ++|+++.-.
T Consensus 152 Ii~D~~~p~~~~~~L~t~eFy~~~~~~L~--~~Gv~v~q~ 189 (274)
T d1iy9a_ 152 IMVDSTEPVGPAVNLFTKGFYAGIAKALK--EDGIFVAQT 189 (274)
T ss_dssp EEESCSSCCSCCCCCSTTHHHHHHHHHEE--EEEEEEEEC
T ss_pred EEEcCCCCCCcchhhccHHHHHHHHhhcC--CCceEEEec
Confidence 9843 2221111 25678899999998 678777643
|
| >d1xj5a_ c.66.1.17 (A:) Spermidine synthase {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Spermidine synthase domain: Spermidine synthase species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]
Probab=97.40 E-value=0.00026 Score=58.61 Aligned_cols=104 Identities=12% Similarity=0.072 Sum_probs=71.8
Q ss_pred CCCeEEEecCCCCHHHHHHHHh-C-CEEEEEcCCCcHHHHHHHHHHHHH-----cCCceEEEEeecCCCCcCcCCCCCcE
Q 026274 70 SGANVVELGAGTSLPGLVAAKV-G-SNVTLTDDSNRIEVLKNMRRVCEM-----NKLNCRVMGLTWGFLDASIFDLNPNI 142 (241)
Q Consensus 70 ~~~~VLElGcGtGl~sl~la~~-g-~~V~~tD~~~~~~~l~~~~~n~~~-----n~~~~~~~~l~w~~~~~~~~~~~fDl 142 (241)
+.++||-||-|.|.+...+.+. + .+|+++|+++ ++++.+++-... .+.++++...|.........+.+||+
T Consensus 80 ~pk~VLiiGgG~G~~~r~~l~~~~~~~i~~VEiD~--~Vi~~~~~~f~~~~~~~~~~r~~i~~~Da~~~l~~~~~~~yDv 157 (290)
T d1xj5a_ 80 NPKKVLVIGGGDGGVLREVARHASIEQIDMCEIDK--MVVDVSKQFFPDVAIGYEDPRVNLVIGDGVAFLKNAAEGSYDA 157 (290)
T ss_dssp CCCEEEEETCSSSHHHHHHTTCTTCCEEEEEESCH--HHHHHHHHHCHHHHGGGGSTTEEEEESCHHHHHHTSCTTCEEE
T ss_pred CCcceEEecCCchHHHHHHHhcccceeeEEecCCH--HHHHHHHHhchhhhccccCCCcEEEEccHHHHHhhccccCccE
Confidence 4579999999999888888876 3 3899999995 799988875432 23456666555443332333458999
Q ss_pred EEEcCCcCC--Cc---cHHHHHHHHHHHhhcCCCeEEEEEe
Q 026274 143 ILGADVFYD--AS---AFDDLFATITYLLQSSPGSVFITTY 178 (241)
Q Consensus 143 Il~~dvly~--~~---~~~~ll~~~~~lL~~~~~~~~~~~~ 178 (241)
|+. |+.-- +. .-..+++.+++.|+ ++|+++.-.
T Consensus 158 Ii~-D~~dp~~~~~~L~t~eF~~~~~~~L~--~~Gi~v~q~ 195 (290)
T d1xj5a_ 158 VIV-DSSDPIGPAKELFEKPFFQSVARALR--PGGVVCTQA 195 (290)
T ss_dssp EEE-CCCCTTSGGGGGGSHHHHHHHHHHEE--EEEEEEEEC
T ss_pred EEE-cCCCCCCcchhhCCHHHHHHHHHhcC--CCcEEEEec
Confidence 995 43321 11 23568899999998 778777654
|
| >d1ej0a_ c.66.1.2 (A:) RNA methyltransferase FtsJ {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: RNA methyltransferase FtsJ domain: RNA methyltransferase FtsJ species: Escherichia coli [TaxId: 562]
Probab=97.31 E-value=0.0022 Score=49.08 Aligned_cols=112 Identities=13% Similarity=0.057 Sum_probs=70.0
Q ss_pred ccHHHHHHHHHhccCCCCCCeEEEecCCCCHHHHHHHHh-C--CEEEEEcCCCcHHHHHHHHHHHHHcCCceEEEEeecC
Q 026274 53 PCSVILAEYVWQQRYRFSGANVVELGAGTSLPGLVAAKV-G--SNVTLTDDSNRIEVLKNMRRVCEMNKLNCRVMGLTWG 129 (241)
Q Consensus 53 ~~s~~L~~~l~~~~~~~~~~~VLElGcGtGl~sl~la~~-g--~~V~~tD~~~~~~~l~~~~~n~~~n~~~~~~~~l~w~ 129 (241)
.|++.|.+...+..-..++.+||||||+.|-++.++++. + ..|+++|+.+. - .-....+...+..
T Consensus 5 RaafKL~EI~~k~~l~k~~~~vlDLg~aPGgw~q~~~~~~~~~~~v~~vDl~~~---~---------~i~~~~~~~~d~~ 72 (180)
T d1ej0a_ 5 RAWFKLDEIQQSDKLFKPGMTVVDLGAAPGGWSQYVVTQIGGKGRIIACDLLPM---D---------PIVGVDFLQGDFR 72 (180)
T ss_dssp HHHHHHHHHHHHHCCCCTTCEEEEESCTTCHHHHHHHHHHCTTCEEEEEESSCC---C---------CCTTEEEEESCTT
T ss_pred HHHHHHHHHHHHhCccCCCCeEEEEeccCCcceEEEEeeccccceEEEeecccc---c---------ccCCceEeecccc
Confidence 467778776666555557889999999999999988875 3 38999999862 0 1112344444443
Q ss_pred CCCc------CcCCCCCcEEEEcCCcCCC-----------ccHHHHHHHHHHHhhcCCCeEEEEEe
Q 026274 130 FLDA------SIFDLNPNIILGADVFYDA-----------SAFDDLFATITYLLQSSPGSVFITTY 178 (241)
Q Consensus 130 ~~~~------~~~~~~fDlIl~~dvly~~-----------~~~~~ll~~~~~lL~~~~~~~~~~~~ 178 (241)
+... .....++|+|++-...--. ......+....++|+ +||.|++=.
T Consensus 73 ~~~~~~~~~~~~~~~~~DlVlSD~ap~~sg~~~~d~~~~~~L~~~~l~~a~~~Lk--~gG~fV~K~ 136 (180)
T d1ej0a_ 73 DELVMKALLERVGDSKVQVVMSDMAPNMSGTPAVDIPRAMYLVELALEMCRDVLA--PGGSFVVKV 136 (180)
T ss_dssp SHHHHHHHHHHHTTCCEEEEEECCCCCCCSCHHHHHHHHHHHHHHHHHHHHHHEE--EEEEEEEEE
T ss_pred cchhhhhhhhhccCcceeEEEecccchhcccchhHHHHHHHHHHHHHHhhhhccC--CCCcEEEEE
Confidence 3211 1123479999854332221 134556677778887 566666553
|
| >d2o07a1 c.66.1.17 (A:16-300) Spermidine synthase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Spermidine synthase domain: Spermidine synthase species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.27 E-value=0.0005 Score=56.74 Aligned_cols=103 Identities=10% Similarity=-0.011 Sum_probs=69.3
Q ss_pred CCCeEEEecCCCCHHHHHHHHh-C-CEEEEEcCCCcHHHHHHHHHHHHH-----cCCceEEEEeecCCCCcCcCCCCCcE
Q 026274 70 SGANVVELGAGTSLPGLVAAKV-G-SNVTLTDDSNRIEVLKNMRRVCEM-----NKLNCRVMGLTWGFLDASIFDLNPNI 142 (241)
Q Consensus 70 ~~~~VLElGcGtGl~sl~la~~-g-~~V~~tD~~~~~~~l~~~~~n~~~-----n~~~~~~~~l~w~~~~~~~~~~~fDl 142 (241)
..++||-||-|.|.+.-.+.+. + .+|+++|+++ ++++.+++-... ...++++...|....... ...+||+
T Consensus 78 ~pk~vLiiGgG~G~~~~~~l~~~~~~~v~~vEiD~--~Vv~~a~~~~~~~~~~~~d~rv~i~~~Da~~~l~~-~~~~yDv 154 (285)
T d2o07a1 78 NPRKVLIIGGGDGGVLREVVKHPSVESVVQCEIDE--DVIQVSKKFLPGMAIGYSSSKLTLHVGDGFEFMKQ-NQDAFDV 154 (285)
T ss_dssp SCCEEEEEECTTSHHHHHHTTCTTCCEEEEEESCH--HHHHHHHHHCHHHHGGGGCTTEEEEESCHHHHHHT-CSSCEEE
T ss_pred CcCeEEEeCCCchHHHHHHHHcCCcceeeeccCCH--HHHHHHHhhchhhccccCCCCceEEEccHHHHHhc-CCCCCCE
Confidence 4579999999999888888876 3 4899999995 799988875432 244666666554443322 2458999
Q ss_pred EEEcCCcCCCc-----cHHHHHHHHHHHhhcCCCeEEEEEe
Q 026274 143 ILGADVFYDAS-----AFDDLFATITYLLQSSPGSVFITTY 178 (241)
Q Consensus 143 Il~~dvly~~~-----~~~~ll~~~~~lL~~~~~~~~~~~~ 178 (241)
|+. |+.-... .-..+++.+++.|+ ++|++++-.
T Consensus 155 Ii~-D~~~p~~~~~~L~t~eF~~~~~~~L~--~~Gi~v~q~ 192 (285)
T d2o07a1 155 IIT-DSSDPMGPAESLFKESYYQLMKTALK--EDGVLCCQG 192 (285)
T ss_dssp EEE-ECC-----------CHHHHHHHHHEE--EEEEEEEEE
T ss_pred EEE-cCCCCCCcccccccHHHHHHHHHhcC--CCCeEEEec
Confidence 995 4321111 12356888999998 677776654
|
| >d1ixka_ c.66.1.38 (A:) Hypothetical methyltransferase PH1374 {Archaeon Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: NOL1/NOP2/sun domain: Hypothetical methyltransferase PH1374 species: Archaeon Pyrococcus horikoshii [TaxId: 53953]
Probab=97.20 E-value=0.0047 Score=51.30 Aligned_cols=140 Identities=13% Similarity=0.118 Sum_probs=85.2
Q ss_pred ccHHHHHHHHHhccCCCCCCeEEEecCCCCHHHHHHHHh---CCEEEEEcCCCcHHHHHHHHHHHHHcCCc-eEEEEeec
Q 026274 53 PCSVILAEYVWQQRYRFSGANVVELGAGTSLPGLVAAKV---GSNVTLTDDSNRIEVLKNMRRVCEMNKLN-CRVMGLTW 128 (241)
Q Consensus 53 ~~s~~L~~~l~~~~~~~~~~~VLElGcGtGl~sl~la~~---g~~V~~tD~~~~~~~l~~~~~n~~~n~~~-~~~~~l~w 128 (241)
+.+-.++-++.. ...|.+|||+.||.|-=+..++.. ...+++.|.++ .-++.++.|++..+.. +.+...+
T Consensus 102 D~aS~l~~~~l~---~~~g~~vlD~CAapGgKt~~l~~~~~~~~~i~a~d~~~--~r~~~l~~~~~r~~~~~i~~~~~d- 175 (313)
T d1ixka_ 102 EASSMYPPVALD---PKPGEIVADMAAAPGGKTSYLAQLMRNDGVIYAFDVDE--NRLRETRLNLSRLGVLNVILFHSS- 175 (313)
T ss_dssp CHHHHHHHHHHC---CCTTCEEEECCSSCSHHHHHHHHHTTTCSEEEEECSCH--HHHHHHHHHHHHHTCCSEEEESSC-
T ss_pred cccccchhhccc---CCccceeeecccchhhhhHhhhhhcccccceeeeccCH--HHHHHHHHHHHHHHhhcccccccc-
Confidence 444444444432 346789999999999887887765 33799999995 5788888888877764 3222111
Q ss_pred CCCCcCcCCCCCcEEEEcCC------cCC-C---------------ccHHHHHHHHHHHhhcCCCe-EEEEEe--eccCc
Q 026274 129 GFLDASIFDLNPNIILGADV------FYD-A---------------SAFDDLFATITYLLQSSPGS-VFITTY--HNRSG 183 (241)
Q Consensus 129 ~~~~~~~~~~~fDlIl~~dv------ly~-~---------------~~~~~ll~~~~~lL~~~~~~-~~~~~~--~~r~~ 183 (241)
....+.....||.|+.--+ +.. + .....++.....+++ +|| ++|..+ .....
T Consensus 176 -~~~~~~~~~~fD~ILvDaPCSg~G~~~r~p~~~~~~~~~~~~~l~~~Q~~iL~~a~~~lk--~gG~lVYsTCSl~~eEN 252 (313)
T d1ixka_ 176 -SLHIGELNVEFDKILLDAPCTGSGTIHKNPERKWNRTMDDIKFCQGLQMRLLEKGLEVLK--PGGILVYSTCSLEPEEN 252 (313)
T ss_dssp -GGGGGGGCCCEEEEEEECCTTSTTTCC--------CCHHHHHHHHHHHHHHHHHHHHHEE--EEEEEEEEESCCCGGGT
T ss_pred -ccccccccccccEEEEccccccCCceeeccchhhhhhhhHHHHHHHHHHHHHHhhhheeC--CCcEEEEeeccCChHhH
Confidence 1111233458999985211 111 1 134455666667776 444 555443 33444
Q ss_pred hhHHHHHHHHcCCEEEEE
Q 026274 184 HHLIEFLMVKWGLKCVKL 201 (241)
Q Consensus 184 ~~~~~~~~~~~g~~~~~i 201 (241)
...+..++++++++...+
T Consensus 253 E~VV~~~L~~~~~~~~~~ 270 (313)
T d1ixka_ 253 EFVIQWALDNFDVELLPL 270 (313)
T ss_dssp HHHHHHHHHHSSEEEECC
T ss_pred HHHHHHHHhcCCCEEeec
Confidence 556777888888777654
|
| >d2b2ca1 c.66.1.17 (A:3-314) Spermidine synthase {Caenorhabditis elegans [TaxId: 6239]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Spermidine synthase domain: Spermidine synthase species: Caenorhabditis elegans [TaxId: 6239]
Probab=97.17 E-value=0.00022 Score=59.60 Aligned_cols=103 Identities=11% Similarity=-0.001 Sum_probs=66.6
Q ss_pred CCCeEEEecCCCCHHHHHHHHhC--CEEEEEcCCCcHHHHHHHHHHHHHc-----CCceEEEEeecCCCCcCcCCCCCcE
Q 026274 70 SGANVVELGAGTSLPGLVAAKVG--SNVTLTDDSNRIEVLKNMRRVCEMN-----KLNCRVMGLTWGFLDASIFDLNPNI 142 (241)
Q Consensus 70 ~~~~VLElGcGtGl~sl~la~~g--~~V~~tD~~~~~~~l~~~~~n~~~n-----~~~~~~~~l~w~~~~~~~~~~~fDl 142 (241)
..++||-||-|.|.+.-.+.+.. .+|+++|+++ ++++.+++-...+ ..++++...|....... ...+||+
T Consensus 106 ~pk~VLIiGgG~G~~~rellk~~~v~~v~~VEID~--~Vv~~a~~~~~~~~~~~~dprv~i~i~Da~~~l~~-~~~~yDv 182 (312)
T d2b2ca1 106 DPKRVLIIGGGDGGILREVLKHESVEKVTMCEIDE--MVIDVAKKFLPGMSCGFSHPKLDLFCGDGFEFLKN-HKNEFDV 182 (312)
T ss_dssp SCCEEEEESCTTSHHHHHHTTCTTCCEEEEECSCH--HHHHHHHHHCTTTSGGGGCTTEEEECSCHHHHHHH-CTTCEEE
T ss_pred CCCeEEEeCCCchHHHHHHHHcCCcceEEEEcccH--HHHHHHHhhchhhccccCCCCeEEEEchHHHHHHh-CCCCCCE
Confidence 45789999999998888888864 4899999995 7999888755332 23455544343322211 3458999
Q ss_pred EEEcCCcC---CCc--cHHHHHHHHHHHhhcCCCeEEEEEe
Q 026274 143 ILGADVFY---DAS--AFDDLFATITYLLQSSPGSVFITTY 178 (241)
Q Consensus 143 Il~~dvly---~~~--~~~~ll~~~~~lL~~~~~~~~~~~~ 178 (241)
|+. |+.- ... .-..+++.+++.|+ ++|+++.-.
T Consensus 183 II~-D~~dp~~~~~~L~t~eFy~~~~~~L~--~~Gi~v~q~ 220 (312)
T d2b2ca1 183 IIT-DSSDPVGPAESLFGQSYYELLRDALK--EDGILSSQG 220 (312)
T ss_dssp EEE-CCC-------------HHHHHHHHEE--EEEEEEEEC
T ss_pred EEE-cCCCCCCcchhhhhHHHHHHHHhhcC--CCcEEEEec
Confidence 995 3321 111 23566889999998 677777643
|
| >d2p41a1 c.66.1.25 (A:8-264) An RNA cap (nucleoside-2'-O-)-methyltransferase domain of RNA polymerase NS5 {Dengue virus 2 [TaxId: 11060]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: mRNA cap methylase domain: An RNA cap (nucleoside-2'-O-)-methyltransferase domain of RNA polymerase NS5 species: Dengue virus 2 [TaxId: 11060]
Probab=97.02 E-value=0.0066 Score=48.66 Aligned_cols=145 Identities=17% Similarity=0.018 Sum_probs=80.0
Q ss_pred ceEEeccHHHHHHHHHhccCCCCCCeEEEecCCCCHHHHHHHHhC--CEEEEEcCCCcHHHHHHHHHHHHHcCCceEEEE
Q 026274 48 GLFVWPCSVILAEYVWQQRYRFSGANVVELGAGTSLPGLVAAKVG--SNVTLTDDSNRIEVLKNMRRVCEMNKLNCRVMG 125 (241)
Q Consensus 48 g~~~W~~s~~L~~~l~~~~~~~~~~~VLElGcGtGl~sl~la~~g--~~V~~tD~~~~~~~l~~~~~n~~~n~~~~~~~~ 125 (241)
|..+=.+++.|.+...+. ....+.+|+|||||.|-++..++... ..|.++|+--.....+. .....+.++ ..
T Consensus 45 ~~~~SR~~~Kl~~~~~~~-~~~~~~~vvDlG~~pGgws~~~a~~~~v~~V~g~~iG~d~~e~P~---~~~~~~~ni--~~ 118 (257)
T d2p41a1 45 HHAVSRGSAKLRWFVERN-LVTPEGKVVDLGCGRGGWSYYCGGLKNVREVKGLTKGGPGHEEPI---PMSTYGWNL--VR 118 (257)
T ss_dssp SCCSSTHHHHHHHHHHTT-SSCCCEEEEEETCTTSHHHHHHHTSTTEEEEEEECCCSTTSCCCC---CCCSTTGGG--EE
T ss_pred CCCcchHHHHHHHHHHhc-CccCCCeEEEecCCCChHHHHHHhhcCCCceeEEEecCccccCCc---ccccccccc--cc
Confidence 444457889996666554 44456689999999999999999874 47888888421000000 000011111 12
Q ss_pred eecCCCCcCcCCCCCcEEEEcCCcCCCc-------cHHHHHHHHHHHhhcCCCeEEEEEeeccCchhH---HHHHHHHcC
Q 026274 126 LTWGFLDASIFDLNPNIILGADVFYDAS-------AFDDLFATITYLLQSSPGSVFITTYHNRSGHHL---IEFLMVKWG 195 (241)
Q Consensus 126 l~w~~~~~~~~~~~fDlIl~~dvly~~~-------~~~~ll~~~~~lL~~~~~~~~~~~~~~r~~~~~---~~~~~~~~g 195 (241)
+.-+.......+...|+|+| |+-.+.. -.-.+++.+...|++ ++-|++-.-+-+..+. ++.+..++|
T Consensus 119 ~~~~~dv~~l~~~~~D~vlc-Dm~ess~~~~vd~~Rtl~vLela~~wLk~--gg~FvvKVl~py~~~v~e~le~lq~~fg 195 (257)
T d2p41a1 119 LQSGVDVFFIPPERCDTLLC-DIGESSPNPTVEAGRTLRVLNLVENWLSN--NTQFCVKVLNPYMSSVIEKMEALQRKHG 195 (257)
T ss_dssp EECSCCTTTSCCCCCSEEEE-CCCCCCSSHHHHHHHHHHHHHHHHHHCCT--TCEEEEEESCCCSHHHHHHHHHHHHHHC
T ss_pred chhhhhHHhcCCCcCCEEEe-eCCCCCCCchhhhhhHHHHHHHHHHHccc--CCEEEEEECCCCChHHHHHHHHHHHHhC
Confidence 22222222334568999995 4433322 122566777788884 4555544333344333 345667777
Q ss_pred CEEEEE
Q 026274 196 LKCVKL 201 (241)
Q Consensus 196 ~~~~~i 201 (241)
-..+..
T Consensus 196 g~lVR~ 201 (257)
T d2p41a1 196 GALVRN 201 (257)
T ss_dssp CEEECC
T ss_pred CeeEcC
Confidence 555543
|
| >d2bm8a1 c.66.1.50 (A:2-233) Cephalosporin hydroxylase CmcI {Streptomyces clavuligerus [TaxId: 1901]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: CmcI-like domain: Cephalosporin hydroxylase CmcI species: Streptomyces clavuligerus [TaxId: 1901]
Probab=96.97 E-value=0.00095 Score=53.35 Aligned_cols=119 Identities=16% Similarity=0.056 Sum_probs=66.2
Q ss_pred ceEEeccHHHHHHHHHhccCCCCCCeEEEecCCCCHHHHHHHHh------CCEEEEEcCCCcHHHHHHHHHHHHHcCCce
Q 026274 48 GLFVWPCSVILAEYVWQQRYRFSGANVVELGAGTSLPGLVAAKV------GSNVTLTDDSNRIEVLKNMRRVCEMNKLNC 121 (241)
Q Consensus 48 g~~~W~~s~~L~~~l~~~~~~~~~~~VLElGcGtGl~sl~la~~------g~~V~~tD~~~~~~~l~~~~~n~~~n~~~~ 121 (241)
|..+|..-..++-|-. .-...+.++|||+|++.|.-+++++.. .++|+++|+++. .... ......++
T Consensus 59 G~p~~k~p~d~~~~~e-li~~~KPk~ILEIGv~~GgS~~~~a~~l~~~~~~~kI~giDId~~--~~~~----~~~~~~~I 131 (232)
T d2bm8a1 59 GLRMLKDPDTQAVYHD-MLWELRPRTIVELGVYNGGSLAWFRDLTKIMGIDCQVIGIDRDLS--RCQI----PASDMENI 131 (232)
T ss_dssp TEECCSCHHHHHHHHH-HHHHHCCSEEEEECCTTSHHHHHHHHHHHHTTCCCEEEEEESCCT--TCCC----CGGGCTTE
T ss_pred ceecccCHHHHHHHHH-HHHHhCCCEEEEECCCCchHHHHHHHHHHhcCCCceEEecCcChh--hhhh----hhccccce
Confidence 5666755555544411 112346789999999999766666542 348999999862 1111 11223456
Q ss_pred EEEEeecCCCCc--CcCCCCCcEEEEcCCcCCCccHHHHHHHHHHHhhcCCCeEEEEE
Q 026274 122 RVMGLTWGFLDA--SIFDLNPNIILGADVFYDASAFDDLFATITYLLQSSPGSVFITT 177 (241)
Q Consensus 122 ~~~~l~w~~~~~--~~~~~~fDlIl~~dvly~~~~~~~ll~~~~~lL~~~~~~~~~~~ 177 (241)
++...+..+... ......+|+|+.-+. +.......-+. +..+|+ +|+++++.
T Consensus 132 ~~i~gDs~~~~~~~~l~~~~~dlIfID~~-H~~~~v~~~~~-~~~lLk--~GG~iIve 185 (232)
T d2bm8a1 132 TLHQGDCSDLTTFEHLREMAHPLIFIDNA-HANTFNIMKWA-VDHLLE--EGDYFIIE 185 (232)
T ss_dssp EEEECCSSCSGGGGGGSSSCSSEEEEESS-CSSHHHHHHHH-HHHTCC--TTCEEEEC
T ss_pred eeeecccccHHHHHHHHhcCCCEEEEcCC-cchHHHHHHHH-HhcccC--cCCEEEEE
Confidence 676666543321 222346888776443 33222222222 456776 67777765
|
| >d2b9ea1 c.66.1.38 (A:133-425) NOL1R {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: NOL1/NOP2/sun domain: NOL1R species: Human (Homo sapiens) [TaxId: 9606]
Probab=96.96 E-value=0.024 Score=46.31 Aligned_cols=77 Identities=14% Similarity=0.071 Sum_probs=55.6
Q ss_pred CCCCCeEEEecCCCCHHHHHHHHh---CCEEEEEcCCCcHHHHHHHHHHHHHcCCc-eEEEEeecCCCCcCc-CCCCCcE
Q 026274 68 RFSGANVVELGAGTSLPGLVAAKV---GSNVTLTDDSNRIEVLKNMRRVCEMNKLN-CRVMGLTWGFLDASI-FDLNPNI 142 (241)
Q Consensus 68 ~~~~~~VLElGcGtGl~sl~la~~---g~~V~~tD~~~~~~~l~~~~~n~~~n~~~-~~~~~l~w~~~~~~~-~~~~fDl 142 (241)
...|.+|||+.||.|--+..+|.+ ...|++.|+++ .-++.+++|++..+.. +.+...|........ ...+||.
T Consensus 92 ~~~g~~vLD~cAapGgKt~~la~l~~~~~~i~a~d~~~--~R~~~l~~~l~r~g~~~~~~~~~d~~~~~~~~~~~~~fD~ 169 (293)
T d2b9ea1 92 PPPGSHVIDACAAPGNKTSHLAALLKNQGKIFAFDLDA--KRLASMATLLARAGVSCCELAEEDFLAVSPSDPRYHEVHY 169 (293)
T ss_dssp CCTTCEEEESSCTTCHHHHHHHHHHTTCSEEEEEESCH--HHHHHHHHHHHHTTCCSEEEEECCGGGSCTTCGGGTTEEE
T ss_pred CCccceEEecccchhhHHHHHHHHhcCCceEeeecCCH--HHHHHHHHHHHhcCccceeeeehhhhhhcccccccceeeE
Confidence 346789999999999888887764 34899999995 5788999999988874 555555544332211 1247999
Q ss_pred EEEc
Q 026274 143 ILGA 146 (241)
Q Consensus 143 Il~~ 146 (241)
|+.-
T Consensus 170 VL~D 173 (293)
T d2b9ea1 170 ILLD 173 (293)
T ss_dssp EEEC
T ss_pred Eeec
Confidence 9854
|
| >d1wg8a2 c.66.1.23 (A:5-108,A:207-284) TM0872, methyltransferase domain {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: MraW-like putative methyltransferases domain: TM0872, methyltransferase domain species: Thermus thermophilus [TaxId: 274]
Probab=96.89 E-value=0.0023 Score=49.12 Aligned_cols=125 Identities=14% Similarity=0.145 Sum_probs=76.6
Q ss_pred CCCCCCeEEEecCCCCHHHHHHHHhCCEEEEEcCCCcHHHHHHHHHHHHHcCCceEEEEeecCCCCc---CcCCCCCcEE
Q 026274 67 YRFSGANVVELGAGTSLPGLVAAKVGSNVTLTDDSNRIEVLKNMRRVCEMNKLNCRVMGLTWGFLDA---SIFDLNPNII 143 (241)
Q Consensus 67 ~~~~~~~VLElGcGtGl~sl~la~~g~~V~~tD~~~~~~~l~~~~~n~~~n~~~~~~~~l~w~~~~~---~~~~~~fDlI 143 (241)
...+|..++|..+|.|--+..+.+.+.+|+++|.++ ++++.++.. ....+.+.+....+... .....++|.|
T Consensus 15 ~~~~g~~~vD~T~G~GGhs~~iL~~~~~viaiD~D~--~ai~~a~~~---~~~~~~~~~~~f~~~~~~l~~~~~~~vdgI 89 (182)
T d1wg8a2 15 AVRPGGVYVDATLGGAGHARGILERGGRVIGLDQDP--EAVARAKGL---HLPGLTVVQGNFRHLKRHLAALGVERVDGI 89 (182)
T ss_dssp TCCTTCEEEETTCTTSHHHHHHHHTTCEEEEEESCH--HHHHHHHHT---CCTTEEEEESCGGGHHHHHHHTTCSCEEEE
T ss_pred CCCCCCEEEEeCCCCcHHHHHHhcccCcEEEEhhhh--hHHHHHhhc---cccceeEeehHHHHHHHHHHHcCCCccCEE
Confidence 345788999999999987877777777999999995 688777652 23355666554443321 1112478888
Q ss_pred EEcCCcCC---------CccHHHHHHHHHHHhhcCCCeEEEEEeeccCchhHHHHHHHHcCCEE
Q 026274 144 LGADVFYD---------ASAFDDLFATITYLLQSSPGSVFITTYHNRSGHHLIEFLMVKWGLKC 198 (241)
Q Consensus 144 l~~dvly~---------~~~~~~ll~~~~~lL~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~ 198 (241)
+.-=-+-. .......++....+|++ +|.+.++.++.-.. ..+..+.++++++.
T Consensus 90 l~DLGvSs~qld~~~re~~~~~~~L~~~~~~lk~-gg~~~ii~fhs~Ed-~ivk~~~~e~~~k~ 151 (182)
T d1wg8a2 90 LADLGVSSFHLDDPSDELNALKEFLEQAAEVLAP-GGRLVVIAFHSLED-RVVKRFLRESGLKV 151 (182)
T ss_dssp EEECSCCHHHHHCGGTHHHHHHHHHHHHHHHEEE-EEEEEEEECSHHHH-HHHHHHHHHHCSEE
T ss_pred EEEccCCHHHhhcchHHHHHHHHHHHHHHhhhCC-CCeEEEEecccchh-HHHHHHHhhcccee
Confidence 85211100 12344567777788873 34455566654322 23455566666653
|
| >d1ae1a_ c.2.1.2 (A:) Tropinone reductase {Jimsonweed (Datura stramonium), I [TaxId: 4076]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Tropinone reductase species: Jimsonweed (Datura stramonium), I [TaxId: 4076]
Probab=95.54 E-value=0.039 Score=43.98 Aligned_cols=81 Identities=15% Similarity=0.101 Sum_probs=58.9
Q ss_pred CCCCeEEEecCCCCH---HHHHHHHhCCEEEEEcCCCcHHHHHHHHHHHHHcCCceEEEEeecCCCCc---------CcC
Q 026274 69 FSGANVVELGAGTSL---PGLVAAKVGSNVTLTDDSNRIEVLKNMRRVCEMNKLNCRVMGLTWGFLDA---------SIF 136 (241)
Q Consensus 69 ~~~~~VLElGcGtGl---~sl~la~~g~~V~~tD~~~~~~~l~~~~~n~~~n~~~~~~~~l~w~~~~~---------~~~ 136 (241)
.+||++|=.|+..|+ ++..+++.|++|+++|.++ +-++.+.+.+...+..+.+...|..+... ...
T Consensus 4 L~gK~alITGas~GIG~aia~~la~~G~~V~i~~r~~--~~l~~~~~~~~~~~~~~~~~~~D~s~~~~~~~~~~~~~~~~ 81 (258)
T d1ae1a_ 4 LKGTTALVTGGSKGIGYAIVEELAGLGARVYTCSRNE--KELDECLEIWREKGLNVEGSVCDLLSRTERDKLMQTVAHVF 81 (258)
T ss_dssp CTTCEEEEESCSSHHHHHHHHHHHHTTCEEEEEESCH--HHHHHHHHHHHHTTCCEEEEECCTTCHHHHHHHHHHHHHHT
T ss_pred CCCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCH--HHHHHHHHHHHhcCCCceEEEeecCCHHHHHHHHHHHHHHh
Confidence 589999999998773 4556677799999999995 57777777788788888777788765431 112
Q ss_pred CCCCcEEEEcCCcCC
Q 026274 137 DLNPNIILGADVFYD 151 (241)
Q Consensus 137 ~~~fDlIl~~dvly~ 151 (241)
....|+++.+--+..
T Consensus 82 ~g~idilinnag~~~ 96 (258)
T d1ae1a_ 82 DGKLNILVNNAGVVI 96 (258)
T ss_dssp TSCCCEEEECCCCCC
T ss_pred CCCcEEEeccccccc
Confidence 346888886544443
|
| >d1i4wa_ c.66.1.24 (A:) Transcription factor sc-mtTFB {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: rRNA adenine dimethylase-like domain: Transcription factor sc-mtTFB species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=95.52 E-value=0.011 Score=49.09 Aligned_cols=54 Identities=11% Similarity=0.138 Sum_probs=40.7
Q ss_pred CCCeEEEecCCCCHHHHHHHHhC-C-EEEEEcCCCcHHHHHHHHHHHHHcCCceEEEEee
Q 026274 70 SGANVVELGAGTSLPGLVAAKVG-S-NVTLTDDSNRIEVLKNMRRVCEMNKLNCRVMGLT 127 (241)
Q Consensus 70 ~~~~VLElGcGtGl~sl~la~~g-~-~V~~tD~~~~~~~l~~~~~n~~~n~~~~~~~~l~ 127 (241)
++..|||+|.|.|.++..+...+ + +|++++.++ .+++.+++... +.++++...|
T Consensus 43 ~~~~VlEIGPG~G~LT~~Ll~~~~~~~v~~iE~D~--~~~~~L~~~~~--~~~~~ii~~D 98 (322)
T d1i4wa_ 43 EELKVLDLYPGVGIQSAIFYNKYCPRQYSLLEKRS--SLYKFLNAKFE--GSPLQILKRD 98 (322)
T ss_dssp TTCEEEEESCTTCHHHHHHHHHHCCSEEEEECCCH--HHHHHHHHHTT--TSSCEEECSC
T ss_pred CCCeEEEECCCCCHHHHHHHhcCCCCEEEEEECCH--HHHHHHHHhcc--CCCcEEEeCc
Confidence 56789999999999999998763 3 899999995 58888876543 3345554433
|
| >d1e3ja2 c.2.1.1 (A:143-312) Ketose reductase (sorbitol dehydrogenase) {Silverleaf whitefly (Bemisia argentifolii) [TaxId: 77855]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Ketose reductase (sorbitol dehydrogenase) species: Silverleaf whitefly (Bemisia argentifolii) [TaxId: 77855]
Probab=95.44 E-value=0.11 Score=38.01 Aligned_cols=97 Identities=19% Similarity=0.204 Sum_probs=56.6
Q ss_pred CCCCCCeEEEecCC-CCHHHHHHHH-hCCEEEEEcCCCcHHHHHHHHHHHHHcCCceEEEEeecCCCCcC----------
Q 026274 67 YRFSGANVVELGAG-TSLPGLVAAK-VGSNVTLTDDSNRIEVLKNMRRVCEMNKLNCRVMGLTWGFLDAS---------- 134 (241)
Q Consensus 67 ~~~~~~~VLElGcG-tGl~sl~la~-~g~~V~~tD~~~~~~~l~~~~~n~~~n~~~~~~~~l~w~~~~~~---------- 134 (241)
....|.+||=+||| .|++.+.+++ .|++|+++|.++ +-++.+++ .+....+ .+......
T Consensus 23 ~~~~g~~vlV~G~G~vG~~~~~~ak~~Ga~vi~v~~~~--~r~~~a~~----~ga~~~~---~~~~~~~~~~~~~~~~~~ 93 (170)
T d1e3ja2 23 GVQLGTTVLVIGAGPIGLVSVLAAKAYGAFVVCTARSP--RRLEVAKN----CGADVTL---VVDPAKEEESSIIERIRS 93 (170)
T ss_dssp TCCTTCEEEEECCSHHHHHHHHHHHHTTCEEEEEESCH--HHHHHHHH----TTCSEEE---ECCTTTSCHHHHHHHHHH
T ss_pred CCCCCCEEEEEcccccchhhHhhHhhhcccccccchHH--HHHHHHHH----cCCcEEE---eccccccccchhhhhhhc
Confidence 45578899999998 6666666666 488999999995 35555544 3333222 12211111
Q ss_pred cCCCCCcEEEEcCCcCCCccHHHHHHHHHHHhhcCCCeEEEEEee
Q 026274 135 IFDLNPNIILGADVFYDASAFDDLFATITYLLQSSPGSVFITTYH 179 (241)
Q Consensus 135 ~~~~~fDlIl~~dvly~~~~~~~ll~~~~~lL~~~~~~~~~~~~~ 179 (241)
.....+|+|+-+ ..-+..++...+++++ +|.+++++..
T Consensus 94 ~~g~g~D~vid~------~g~~~~~~~a~~~~~~-~G~iv~~G~~ 131 (170)
T d1e3ja2 94 AIGDLPNVTIDC------SGNEKCITIGINITRT-GGTLMLVGMG 131 (170)
T ss_dssp HSSSCCSEEEEC------SCCHHHHHHHHHHSCT-TCEEEECSCC
T ss_pred ccccCCceeeec------CCChHHHHHHHHHHhc-CCceEEEecC
Confidence 112468888732 2334566666778873 3445555543
|
| >d1yb1a_ c.2.1.2 (A:) 17-beta-hydroxysteroid dehydrogenase type XI {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: 17-beta-hydroxysteroid dehydrogenase type XI species: Human (Homo sapiens) [TaxId: 9606]
Probab=95.26 E-value=0.12 Score=40.67 Aligned_cols=83 Identities=16% Similarity=0.090 Sum_probs=61.0
Q ss_pred CCCCCCeEEEecCCCCH---HHHHHHHhCCEEEEEcCCCcHHHHHHHHHHHHHcCCceEEEEeecCCCCcC--c------
Q 026274 67 YRFSGANVVELGAGTSL---PGLVAAKVGSNVTLTDDSNRIEVLKNMRRVCEMNKLNCRVMGLTWGFLDAS--I------ 135 (241)
Q Consensus 67 ~~~~~~~VLElGcGtGl---~sl~la~~g~~V~~tD~~~~~~~l~~~~~n~~~n~~~~~~~~l~w~~~~~~--~------ 135 (241)
....|+.+|=-|++.|+ ++..+++.|++|+++|.++ +-++.+.+.+...+.++.....|..+...- .
T Consensus 3 ~~l~Gkv~lITGas~GIG~~ia~~la~~G~~V~l~~r~~--~~l~~~~~~~~~~~~~~~~~~~Dvs~~~~v~~~~~~i~~ 80 (244)
T d1yb1a_ 3 KSVTGEIVLITGAGHGIGRLTAYEFAKLKSKLVLWDINK--HGLEETAAKCKGLGAKVHTFVVDCSNREDIYSSAKKVKA 80 (244)
T ss_dssp CCCTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCH--HHHHHHHHHHHHTTCCEEEEECCTTCHHHHHHHHHHHHH
T ss_pred CCCCCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEECCH--HHHHHHHHHHHhcCCcEEEEEeeCCCHHHHHHHHHHHHH
Confidence 34689999999999884 4666777899999999995 677777777777777777777777665320 0
Q ss_pred CCCCCcEEEEcCCcCC
Q 026274 136 FDLNPNIILGADVFYD 151 (241)
Q Consensus 136 ~~~~fDlIl~~dvly~ 151 (241)
.-+..|+++.+--+..
T Consensus 81 ~~g~idilinnag~~~ 96 (244)
T d1yb1a_ 81 EIGDVSILVNNAGVVY 96 (244)
T ss_dssp HTCCCSEEEECCCCCC
T ss_pred HcCCCceeEeeccccc
Confidence 1236899887766554
|
| >d1xq1a_ c.2.1.2 (A:) Tropinone reductase {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Tropinone reductase species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]
Probab=95.21 E-value=0.059 Score=42.90 Aligned_cols=82 Identities=10% Similarity=0.007 Sum_probs=57.7
Q ss_pred CCCCCeEEEecCCCCH---HHHHHHHhCCEEEEEcCCCcHHHHHHHHHHHHHcCCceEEEEeecCCCCc---------Cc
Q 026274 68 RFSGANVVELGAGTSL---PGLVAAKVGSNVTLTDDSNRIEVLKNMRRVCEMNKLNCRVMGLTWGFLDA---------SI 135 (241)
Q Consensus 68 ~~~~~~VLElGcGtGl---~sl~la~~g~~V~~tD~~~~~~~l~~~~~n~~~n~~~~~~~~l~w~~~~~---------~~ 135 (241)
..+||++|=-|++.|+ ++..+++.|++|+++|.++ +-++.+.+.+...+.++.....|..+... ..
T Consensus 5 ~LkgK~alVTGas~GIG~aiA~~la~~Ga~V~~~~r~~--~~l~~~~~~~~~~~~~~~~~~~Dv~~~~~v~~~~~~~~~~ 82 (259)
T d1xq1a_ 5 SLKAKTVLVTGGTKGIGHAIVEEFAGFGAVIHTCARNE--YELNECLSKWQKKGFQVTGSVCDASLRPEREKLMQTVSSM 82 (259)
T ss_dssp CCTTCEEEETTTTSHHHHHHHHHHHHTTCEEEEEESCH--HHHHHHHHHHHHTTCCEEEEECCTTSHHHHHHHHHHHHHH
T ss_pred CCCCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCH--HHHHHHHHHHHhcCCceEEEeccCCCHHHHHHHHHHHHHH
Confidence 4589999999999885 5666777799999999995 56776766677677777777777654321 01
Q ss_pred CCCCCcEEEEcCCcCC
Q 026274 136 FDLNPNIILGADVFYD 151 (241)
Q Consensus 136 ~~~~fDlIl~~dvly~ 151 (241)
+....|+++.+--+..
T Consensus 83 ~~g~idilvnnAG~~~ 98 (259)
T d1xq1a_ 83 FGGKLDILINNLGAIR 98 (259)
T ss_dssp HTTCCSEEEEECCC--
T ss_pred hCCCcccccccccccC
Confidence 1246899887654443
|
| >d1piwa2 c.2.1.1 (A:153-320) Cinnamyl alcohol dehydrogenase, ADH6 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Cinnamyl alcohol dehydrogenase, ADH6 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=95.11 E-value=0.019 Score=42.68 Aligned_cols=72 Identities=13% Similarity=0.044 Sum_probs=45.5
Q ss_pred cCCCCCCeEEEecCC-CCHHHHHHHH-hCCEEEEEcCCCcHHHHHHHHHHHHHcCCceEEEEeecCCCCc--CcCCCCCc
Q 026274 66 RYRFSGANVVELGAG-TSLPGLVAAK-VGSNVTLTDDSNRIEVLKNMRRVCEMNKLNCRVMGLTWGFLDA--SIFDLNPN 141 (241)
Q Consensus 66 ~~~~~~~~VLElGcG-tGl~sl~la~-~g~~V~~tD~~~~~~~l~~~~~n~~~n~~~~~~~~l~w~~~~~--~~~~~~fD 141 (241)
....+|.+||-+||| .|++.+.+++ .|++|+++|.++ +-++.+++ .|.+.. .+..+... ......+|
T Consensus 23 ~~~~~g~~vlI~GaG~vG~~a~q~ak~~G~~vi~~~~~~--~k~~~a~~----lGa~~~---i~~~~~~~~~~~~~~~~d 93 (168)
T d1piwa2 23 NGCGPGKKVGIVGLGGIGSMGTLISKAMGAETYVISRSS--RKREDAMK----MGADHY---IATLEEGDWGEKYFDTFD 93 (168)
T ss_dssp TTCSTTCEEEEECCSHHHHHHHHHHHHHTCEEEEEESSS--TTHHHHHH----HTCSEE---EEGGGTSCHHHHSCSCEE
T ss_pred hCcCCCCEEEEECCCCcchhHHHHhhhccccccccccch--hHHHHhhc----cCCcEE---eeccchHHHHHhhhcccc
Confidence 345678999999998 7777777775 599999999997 35555544 343321 12222111 11234799
Q ss_pred EEEEc
Q 026274 142 IILGA 146 (241)
Q Consensus 142 lIl~~ 146 (241)
+|+-.
T Consensus 94 ~vi~~ 98 (168)
T d1piwa2 94 LIVVC 98 (168)
T ss_dssp EEEEC
T ss_pred eEEEE
Confidence 88854
|
| >d2ae2a_ c.2.1.2 (A:) Tropinone reductase {Jimsonweed (Datura stramonium), II [TaxId: 4076]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Tropinone reductase species: Jimsonweed (Datura stramonium), II [TaxId: 4076]
Probab=94.93 E-value=0.17 Score=40.00 Aligned_cols=82 Identities=11% Similarity=0.078 Sum_probs=58.2
Q ss_pred CCCCCeEEEecCCCCH---HHHHHHHhCCEEEEEcCCCcHHHHHHHHHHHHHcCCceEEEEeecCCCCc---------Cc
Q 026274 68 RFSGANVVELGAGTSL---PGLVAAKVGSNVTLTDDSNRIEVLKNMRRVCEMNKLNCRVMGLTWGFLDA---------SI 135 (241)
Q Consensus 68 ~~~~~~VLElGcGtGl---~sl~la~~g~~V~~tD~~~~~~~l~~~~~n~~~n~~~~~~~~l~w~~~~~---------~~ 135 (241)
.++||.+|=-|++.|+ ++..+++.|++|+++|.++ +-++.+.+.+...+.++.+...|..+... ..
T Consensus 5 ~L~GK~alITGas~GIG~aia~~la~~Ga~V~~~~r~~--~~l~~~~~~~~~~g~~~~~~~~Dv~~~~~v~~~~~~~~~~ 82 (259)
T d2ae2a_ 5 NLEGCTALVTGGSRGIGYGIVEELASLGASVYTCSRNQ--KELNDCLTQWRSKGFKVEASVCDLSSRSERQELMNTVANH 82 (259)
T ss_dssp CCTTCEEEEESCSSHHHHHHHHHHHHTTCEEEEEESCH--HHHHHHHHHHHHTTCEEEEEECCTTCHHHHHHHHHHHHHH
T ss_pred CCCCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCH--HHHHHHHHHHHhcCCCceEEEeeCCCHHHHHHHHHHHHHH
Confidence 4589999999998874 4566777799999999985 57777777777777777777777665321 11
Q ss_pred CCCCCcEEEEcCCcCC
Q 026274 136 FDLNPNIILGADVFYD 151 (241)
Q Consensus 136 ~~~~fDlIl~~dvly~ 151 (241)
+..+.|+++.+--+..
T Consensus 83 ~~~~idilvnnAG~~~ 98 (259)
T d2ae2a_ 83 FHGKLNILVNNAGIVI 98 (259)
T ss_dssp TTTCCCEEEECCCCCC
T ss_pred hCCCceEEEECCceec
Confidence 2236899987654433
|
| >d1pjca1 c.2.1.4 (A:136-303) L-alanine dehydrogenase {Phormidium lapideum [TaxId: 32060]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Formate/glycerate dehydrogenases, NAD-domain domain: L-alanine dehydrogenase species: Phormidium lapideum [TaxId: 32060]
Probab=94.85 E-value=0.0054 Score=46.25 Aligned_cols=97 Identities=19% Similarity=0.196 Sum_probs=59.2
Q ss_pred CCCeEEEecCC-CCHHHHHHHH-hCCEEEEEcCCCcHHHHHHHHHHHHHcCCceEEEEeecCCCCcCcCCCCCcEEEEcC
Q 026274 70 SGANVVELGAG-TSLPGLVAAK-VGSNVTLTDDSNRIEVLKNMRRVCEMNKLNCRVMGLTWGFLDASIFDLNPNIILGAD 147 (241)
Q Consensus 70 ~~~~VLElGcG-tGl~sl~la~-~g~~V~~tD~~~~~~~l~~~~~n~~~n~~~~~~~~l~w~~~~~~~~~~~fDlIl~~d 147 (241)
+..+|+=||+| .|+-++..|+ +|++|++.|.++ +.++.++.....+ +.....+-... .+ .-...|+||++-
T Consensus 31 ~pa~V~ViGaGvaG~~A~~~A~~lGA~V~~~D~~~--~~l~~l~~~~~~~---~~~~~~~~~~l-~~-~~~~aDivI~aa 103 (168)
T d1pjca1 31 KPGKVVILGGGVVGTEAAKMAVGLGAQVQIFDINV--ERLSYLETLFGSR---VELLYSNSAEI-ET-AVAEADLLIGAV 103 (168)
T ss_dssp CCCEEEEECCSHHHHHHHHHHHHTTCEEEEEESCH--HHHHHHHHHHGGG---SEEEECCHHHH-HH-HHHTCSEEEECC
T ss_pred CCcEEEEECCChHHHHHHHHHhhCCCEEEEEeCcH--HHHHHHHHhhccc---ceeehhhhhhH-HH-hhccCcEEEEee
Confidence 56789999999 6777777776 699999999995 5777766544322 22211100000 00 012689999987
Q ss_pred CcCCCccHHHHHHHHHHHhhcCCCeEEE
Q 026274 148 VFYDASAFDDLFATITYLLQSSPGSVFI 175 (241)
Q Consensus 148 vly~~~~~~~ll~~~~~lL~~~~~~~~~ 175 (241)
.+.-...+.-+-+...+.+| +|.+++
T Consensus 104 lipG~~aP~lIt~~mv~~Mk--~GSVIV 129 (168)
T d1pjca1 104 LVPGRRAPILVPASLVEQMR--TGSVIV 129 (168)
T ss_dssp CCTTSSCCCCBCHHHHTTSC--TTCEEE
T ss_pred ecCCcccCeeecHHHHhhcC--CCcEEE
Confidence 76654444444456666666 455433
|
| >d1dcta_ c.66.1.26 (A:) DNA methylase HaeIII {Haemophilus aegyptius [TaxId: 197575]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: C5 cytosine-specific DNA methylase, DCM domain: DNA methylase HaeIII species: Haemophilus aegyptius [TaxId: 197575]
Probab=94.39 E-value=0.11 Score=41.62 Aligned_cols=72 Identities=14% Similarity=0.140 Sum_probs=49.5
Q ss_pred CeEEEecCCCCHHHHHHHHhCCE-EEEEcCCCcHHHHHHHHHHHHHcCCceEEEEeecCCCCcCcCCCCCcEEEEcCCcC
Q 026274 72 ANVVELGAGTSLPGLVAAKVGSN-VTLTDDSNRIEVLKNMRRVCEMNKLNCRVMGLTWGFLDASIFDLNPNIILGADVFY 150 (241)
Q Consensus 72 ~~VLElGcGtGl~sl~la~~g~~-V~~tD~~~~~~~l~~~~~n~~~n~~~~~~~~l~w~~~~~~~~~~~fDlIl~~dvly 150 (241)
.+||||-||.|-+++.+.+.|.+ +.++|+++ .+.+..+.|.. ..+...|..+...... ...|+++++.+.-
T Consensus 1 mk~~~lF~G~Gg~~~gl~~aG~~~~~a~e~d~--~a~~~~~~N~~-----~~~~~~Di~~~~~~~~-~~~dll~~g~PCq 72 (324)
T d1dcta_ 1 MNLISLFSGAGGLDLGFQKAGFRIICANEYDK--SIWKTYESNHS-----AKLIKGDISKISSDEF-PKCDGIIGGPPCQ 72 (324)
T ss_dssp CEEEEESCSSCHHHHHHHHHTCEEEEEEECCH--HHHHHHHHHCC-----SEEEESCTTTSCGGGS-CCCSEEEECCCCT
T ss_pred CeEEEeCcCcCHHHHHHHHCCCEEEEEEeCCH--HHHHHHHHHCC-----CCCccCChhhCCHhHc-ccccEEeeccccc
Confidence 37999999999999999999996 56999995 46666666542 2334445554432222 3689999886654
Q ss_pred C
Q 026274 151 D 151 (241)
Q Consensus 151 ~ 151 (241)
.
T Consensus 73 ~ 73 (324)
T d1dcta_ 73 S 73 (324)
T ss_dssp T
T ss_pred c
Confidence 3
|
| >d2c7pa1 c.66.1.26 (A:1-327) DNA methylase HhaI {Haemophilus haemolyticus [TaxId: 726]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: C5 cytosine-specific DNA methylase, DCM domain: DNA methylase HhaI species: Haemophilus haemolyticus [TaxId: 726]
Probab=94.33 E-value=0.074 Score=43.19 Aligned_cols=74 Identities=11% Similarity=0.016 Sum_probs=51.3
Q ss_pred CCCCCeEEEecCCCCHHHHHHHHhCCE-EEEEcCCCcHHHHHHHHHHHHHcCCceEEEEeecCCCCcCcCCCCCcEEEEc
Q 026274 68 RFSGANVVELGAGTSLPGLVAAKVGSN-VTLTDDSNRIEVLKNMRRVCEMNKLNCRVMGLTWGFLDASIFDLNPNIILGA 146 (241)
Q Consensus 68 ~~~~~~VLElGcGtGl~sl~la~~g~~-V~~tD~~~~~~~l~~~~~n~~~n~~~~~~~~l~w~~~~~~~~~~~fDlIl~~ 146 (241)
...+.+||||-||.|-+++.+.+.|.+ |.++|+++ .+++..+.|.... . ..|..+...... ..+|+|+++
T Consensus 8 ~~~~lrv~~lFsG~Gg~~~gl~~aG~~~v~a~e~d~--~a~~~~~~N~~~~-~-----~~Di~~~~~~~~-~~~Dll~gg 78 (327)
T d2c7pa1 8 QLTGLRFIDLFAGLGGFRLALESCGAECVYSNEWDK--YAQEVYEMNFGEK-P-----EGDITQVNEKTI-PDHDILCAG 78 (327)
T ss_dssp TTTTCEEEEETCTTTHHHHHHHHTTCEEEEEECCCH--HHHHHHHHHHSCC-C-----BSCGGGSCGGGS-CCCSEEEEE
T ss_pred cCCCCeEEEECccccHHHHHHHHCCCeEEEEEeCCH--HHHHHHHHHCCCC-C-----cCchhcCchhhc-ceeeeeecc
Confidence 346789999999999999999999985 66789995 5888888776321 1 123332221111 368999988
Q ss_pred CCcC
Q 026274 147 DVFY 150 (241)
Q Consensus 147 dvly 150 (241)
.+.-
T Consensus 79 pPCq 82 (327)
T d2c7pa1 79 FPCQ 82 (327)
T ss_dssp CCCT
T ss_pred cccc
Confidence 7653
|
| >d1g60a_ c.66.1.11 (A:) Methyltransferase mboII {Moraxella bovis [TaxId: 476]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Type II DNA methylase domain: Methyltransferase mboII species: Moraxella bovis [TaxId: 476]
Probab=94.28 E-value=0.076 Score=41.28 Aligned_cols=57 Identities=21% Similarity=0.164 Sum_probs=45.3
Q ss_pred HHHHHHHHhccCCCCCCeEEEecCCCCHHHHHHHHhCCEEEEEcCCCcHHHHHHHHHHHH
Q 026274 56 VILAEYVWQQRYRFSGANVVELGAGTSLPGLVAAKVGSNVTLTDDSNRIEVLKNMRRVCE 115 (241)
Q Consensus 56 ~~L~~~l~~~~~~~~~~~VLElGcGtGl~sl~la~~g~~V~~tD~~~~~~~l~~~~~n~~ 115 (241)
..|.+++.+.-. .+|..|||-=||+|..++++.+.|.+.+++|+++ +.++.+++.++
T Consensus 199 ~~L~~~lI~~~s-~~gd~VlDpF~GSGTT~~aa~~~~R~~ig~El~~--~y~~~a~~Rl~ 255 (256)
T d1g60a_ 199 RDLIERIIRASS-NPNDLVLDCFMGSGTTAIVAKKLGRNFIGCDMNA--EYVNQANFVLN 255 (256)
T ss_dssp HHHHHHHHHHHC-CTTCEEEESSCTTCHHHHHHHHTTCEEEEEESCH--HHHHHHHHHHH
T ss_pred hhHHHHHHHHhC-CCCCEEEECCCCchHHHHHHHHcCCeEEEEeCCH--HHHHHHHHHHc
Confidence 345555444322 4678999999999999999999999999999995 68888887664
|
| >d2c07a1 c.2.1.2 (A:54-304) beta-keto acyl carrier protein reductase {Malaria parasite (Plasmodium falciparum) [TaxId: 5833]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: beta-keto acyl carrier protein reductase species: Malaria parasite (Plasmodium falciparum) [TaxId: 5833]
Probab=94.21 E-value=0.16 Score=39.90 Aligned_cols=83 Identities=12% Similarity=0.046 Sum_probs=57.2
Q ss_pred CCCCCCeEEEecCCCCH---HHHHHHHhCCEEEEEcCCCcHHHHHHHHHHHHHcCCceEEEEeecCCCCc--CcC-----
Q 026274 67 YRFSGANVVELGAGTSL---PGLVAAKVGSNVTLTDDSNRIEVLKNMRRVCEMNKLNCRVMGLTWGFLDA--SIF----- 136 (241)
Q Consensus 67 ~~~~~~~VLElGcGtGl---~sl~la~~g~~V~~tD~~~~~~~l~~~~~n~~~n~~~~~~~~l~w~~~~~--~~~----- 136 (241)
..+++|.+|=-|++.|+ ++..+++.|++|+++|.++ +.++.+.+.++..+.++.....|..+... ...
T Consensus 6 f~lenKvalITGas~GIG~a~a~~la~~Ga~V~~~~r~~--~~l~~~~~~l~~~g~~~~~~~~Dvt~~~~v~~~~~~~~~ 83 (251)
T d2c07a1 6 YCGENKVALVTGAGRGIGREIAKMLAKSVSHVICISRTQ--KSCDSVVDEIKSFGYESSGYAGDVSKKEEISEVINKILT 83 (251)
T ss_dssp CCCSSCEEEEESTTSHHHHHHHHHHTTTSSEEEEEESSH--HHHHHHHHHHHTTTCCEEEEECCTTCHHHHHHHHHHHHH
T ss_pred cCCCCCEEEEeCCCCHHHHHHHHHHHHcCCEEEEEECCH--HHHHHHHHHHHhcCCcEEEEEccCCCHHHHHHHHHHHHH
Confidence 34578899999988772 3444555699999999985 57777777777777777777777765421 000
Q ss_pred -CCCCcEEEEcCCcCC
Q 026274 137 -DLNPNIILGADVFYD 151 (241)
Q Consensus 137 -~~~fDlIl~~dvly~ 151 (241)
-++.|+++.+-.+..
T Consensus 84 ~~g~iDilvnnag~~~ 99 (251)
T d2c07a1 84 EHKNVDILVNNAGITR 99 (251)
T ss_dssp HCSCCCEEEECCCCCC
T ss_pred hcCCceeeeecccccc
Confidence 147899887765544
|
| >d1vl8a_ c.2.1.2 (A:) Gluconate 5-dehydrogenase {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Gluconate 5-dehydrogenase species: Thermotoga maritima [TaxId: 2336]
Probab=94.19 E-value=0.19 Score=39.54 Aligned_cols=81 Identities=11% Similarity=0.108 Sum_probs=54.2
Q ss_pred CCCCCeEEEecCCCCH---HHHHHHHhCCEEEEEcCCCcHHHHHH-HHHHHHHcCCceEEEEeecCCCCc--CcC-----
Q 026274 68 RFSGANVVELGAGTSL---PGLVAAKVGSNVTLTDDSNRIEVLKN-MRRVCEMNKLNCRVMGLTWGFLDA--SIF----- 136 (241)
Q Consensus 68 ~~~~~~VLElGcGtGl---~sl~la~~g~~V~~tD~~~~~~~l~~-~~~n~~~n~~~~~~~~l~w~~~~~--~~~----- 136 (241)
.++||.+|=-|++.|+ ++..+++.|++|+++|.++ +-++. +++-.+..+.++.....|..+... ...
T Consensus 2 ~l~gK~~lITGas~GIG~aia~~la~~Ga~V~i~~r~~--~~~~~~~~~l~~~~g~~~~~~~~Dv~~~~~v~~~~~~~~~ 79 (251)
T d1vl8a_ 2 DLRGRVALVTGGSRGLGFGIAQGLAEAGCSVVVASRNL--EEASEAAQKLTEKYGVETMAFRCDVSNYEEVKKLLEAVKE 79 (251)
T ss_dssp CCTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCH--HHHHHHHHHHHHHHCCCEEEEECCTTCHHHHHHHHHHHHH
T ss_pred CCCCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCH--HHHHHHHHHHHHHhCCcEEEEEccCCCHHHHHHHHHHHHH
Confidence 3689999999998884 4666777799999999996 34443 334345556677777777765421 001
Q ss_pred -CCCCcEEEEcCCcC
Q 026274 137 -DLNPNIILGADVFY 150 (241)
Q Consensus 137 -~~~fDlIl~~dvly 150 (241)
-++.|+++.+--+.
T Consensus 80 ~~g~iDiLVnnAG~~ 94 (251)
T d1vl8a_ 80 KFGKLDTVVNAAGIN 94 (251)
T ss_dssp HHSCCCEEEECCCCC
T ss_pred HcCCCCEEEECCCCC
Confidence 13789998765443
|
| >d1eg2a_ c.66.1.11 (A:) m.RsrI N6 adenosine-specific DNA methyltransferase {Rhodobacter sphaeroides [TaxId: 1063]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Type II DNA methylase domain: m.RsrI N6 adenosine-specific DNA methyltransferase species: Rhodobacter sphaeroides [TaxId: 1063]
Probab=94.14 E-value=0.08 Score=41.71 Aligned_cols=58 Identities=19% Similarity=0.232 Sum_probs=46.8
Q ss_pred HHHHHHHHhccCCCCCCeEEEecCCCCHHHHHHHHhCCEEEEEcCCCcHHHHHHHHHHHHH
Q 026274 56 VILAEYVWQQRYRFSGANVVELGAGTSLPGLVAAKVGSNVTLTDDSNRIEVLKNMRRVCEM 116 (241)
Q Consensus 56 ~~L~~~l~~~~~~~~~~~VLElGcGtGl~sl~la~~g~~V~~tD~~~~~~~l~~~~~n~~~ 116 (241)
..|.+++..... .+|..|||-=||+|..++++.++|.+.+++|+++ +..+.+++.+..
T Consensus 194 ~~L~~~~I~~~s-~~gdiVLDpF~GSGTT~~Aa~~lgR~~ig~El~~--~y~~~a~~Ri~~ 251 (279)
T d1eg2a_ 194 AAVIERLVRALS-HPGSTVLDFFAGSGVTARVAIQEGRNSICTDAAP--VFKEYYQKQLTF 251 (279)
T ss_dssp HHHHHHHHHHHS-CTTCEEEETTCTTCHHHHHHHHHTCEEEEEESST--HHHHHHHHHHHH
T ss_pred hhHHHHHHHhhc-CCCCEEEecCCCCcHHHHHHHHhCCeEEEEeCCH--HHHHHHHHHHHH
Confidence 445566554332 4778999999999999999999999999999997 588888877654
|
| >d1xu9a_ c.2.1.2 (A:) 11-beta-hydroxysteroid dehydrogenase 1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: 11-beta-hydroxysteroid dehydrogenase 1 species: Human (Homo sapiens) [TaxId: 9606]
Probab=94.02 E-value=0.13 Score=40.76 Aligned_cols=82 Identities=18% Similarity=0.231 Sum_probs=52.5
Q ss_pred CCCCCeEEEecCCCC---HHHHHHHHhCCEEEEEcCCCcHHHHHHHHHHH-HHcCCceEEEEeecCCCCcC--------c
Q 026274 68 RFSGANVVELGAGTS---LPGLVAAKVGSNVTLTDDSNRIEVLKNMRRVC-EMNKLNCRVMGLTWGFLDAS--------I 135 (241)
Q Consensus 68 ~~~~~~VLElGcGtG---l~sl~la~~g~~V~~tD~~~~~~~l~~~~~n~-~~n~~~~~~~~l~w~~~~~~--------~ 135 (241)
..+||++|=-|++.| .++..+++.|++|++++.++ +-++.+.... ...+........+..+.... .
T Consensus 11 ~L~GK~alITGassGIG~aiA~~la~~G~~Vil~~r~~--~~l~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~ 88 (269)
T d1xu9a_ 11 MLQGKKVIVTGASKGIGREMAYHLAKMGAHVVVTARSK--ETLQKVVSHCLELGAASAHYIAGTMEDMTFAEQFVAQAGK 88 (269)
T ss_dssp GGTTCEEEESSCSSHHHHHHHHHHHHTTCEEEEEESCH--HHHHHHHHHHHHHTCSEEEEEECCTTCHHHHHHHHHHHHH
T ss_pred ccCCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEECCH--HHHHHHHHHHhhhhcccchhhhhhhhhHHHHHHHHHHHHH
Confidence 468999999999988 34556677799999999995 5666665544 34455555554444322110 0
Q ss_pred CCCCCcEEEEcCCcCC
Q 026274 136 FDLNPNIILGADVFYD 151 (241)
Q Consensus 136 ~~~~fDlIl~~dvly~ 151 (241)
..+..|+++.+-..+.
T Consensus 89 ~~g~~~~li~nag~~~ 104 (269)
T d1xu9a_ 89 LMGGLDMLILNHITNT 104 (269)
T ss_dssp HHTSCSEEEECCCCCC
T ss_pred HhCCcccccccccccc
Confidence 0136788887765554
|
| >d1zema1 c.2.1.2 (A:3-262) Xylitol dehydrogenase {Gluconobacter oxydans [TaxId: 442]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Xylitol dehydrogenase species: Gluconobacter oxydans [TaxId: 442]
Probab=93.79 E-value=0.11 Score=41.12 Aligned_cols=78 Identities=18% Similarity=0.225 Sum_probs=57.3
Q ss_pred CCCCCeEEEecCCCCH---HHHHHHHhCCEEEEEcCCCcHHHHHHHHHHHHHcCCceEEEEeecCCCCc--CcC------
Q 026274 68 RFSGANVVELGAGTSL---PGLVAAKVGSNVTLTDDSNRIEVLKNMRRVCEMNKLNCRVMGLTWGFLDA--SIF------ 136 (241)
Q Consensus 68 ~~~~~~VLElGcGtGl---~sl~la~~g~~V~~tD~~~~~~~l~~~~~n~~~n~~~~~~~~l~w~~~~~--~~~------ 136 (241)
.++||.+|=-|++.|+ ++..+++.|++|+++|.++ +.++.+.+.++..+.++.....|..+... ...
T Consensus 2 rL~gK~alITGas~GIG~aia~~la~~Ga~V~~~~r~~--~~l~~~~~~~~~~g~~~~~~~~Dv~~~~~v~~~~~~~~~~ 79 (260)
T d1zema1 2 KFNGKVCLVTGAGGNIGLATALRLAEEGTAIALLDMNR--EALEKAEASVREKGVEARSYVCDVTSEEAVIGTVDSVVRD 79 (260)
T ss_dssp TTTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCH--HHHHHHHHHHHTTTSCEEEEECCTTCHHHHHHHHHHHHHH
T ss_pred CCCCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCH--HHHHHHHHHHHhcCCcEEEEEccCCCHHHHHHHHHHHHHH
Confidence 4689999999998884 5666777899999999995 67887877777777777777777765431 000
Q ss_pred CCCCcEEEEcC
Q 026274 137 DLNPNIILGAD 147 (241)
Q Consensus 137 ~~~fDlIl~~d 147 (241)
-...|+++.+-
T Consensus 80 ~g~iDilVnna 90 (260)
T d1zema1 80 FGKIDFLFNNA 90 (260)
T ss_dssp HSCCCEEEECC
T ss_pred hCCCCeehhhh
Confidence 13789888654
|
| >d1llua2 c.2.1.1 (A:144-309) Alcohol dehydrogenase {Pseudomonas aeruginosa [TaxId: 287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Alcohol dehydrogenase species: Pseudomonas aeruginosa [TaxId: 287]
Probab=93.72 E-value=0.085 Score=38.58 Aligned_cols=45 Identities=24% Similarity=0.212 Sum_probs=32.6
Q ss_pred ccCCCCCCeEEEecCC-CCHHHHHHHH-hCCEEEEEcCCCcHHHHHHHH
Q 026274 65 QRYRFSGANVVELGAG-TSLPGLVAAK-VGSNVTLTDDSNRIEVLKNMR 111 (241)
Q Consensus 65 ~~~~~~~~~VLElGcG-tGl~sl~la~-~g~~V~~tD~~~~~~~l~~~~ 111 (241)
.....+|.+||=+||| .|+..+.+++ .|++|+++|.++ +-++.++
T Consensus 22 ~~~~~~g~~VlV~GaG~vG~~~~~~ak~~G~~Vi~~~~~~--~~~~~a~ 68 (166)
T d1llua2 22 QTNARPGQWVAISGIGGLGHVAVQYARAMGLHVAAIDIDD--AKLELAR 68 (166)
T ss_dssp HHTCCTTCEEEEECCSHHHHHHHHHHHHTTCEEEEEESCH--HHHHHHH
T ss_pred HhCCCCCCEEEEeeccccHHHHHHHHHHcCCccceecchh--hHHHhhh
Confidence 3445678889889998 6677777776 488999999995 3454444
|
| >d1g0oa_ c.2.1.2 (A:) 1,3,8-trihydroxynaphtalene reductase (THNR, naphtol reductase) {Rice blast fungus (Magnaporthe grisea) [TaxId: 148305]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: 1,3,8-trihydroxynaphtalene reductase (THNR, naphtol reductase) species: Rice blast fungus (Magnaporthe grisea) [TaxId: 148305]
Probab=93.68 E-value=0.12 Score=41.18 Aligned_cols=83 Identities=12% Similarity=0.173 Sum_probs=60.7
Q ss_pred CCCCCeEEEecCCCCH---HHHHHHHhCCEEEEEcCCCcHHHHHHHHHHHHHcCCceEEEEeecCCCCc--Cc------C
Q 026274 68 RFSGANVVELGAGTSL---PGLVAAKVGSNVTLTDDSNRIEVLKNMRRVCEMNKLNCRVMGLTWGFLDA--SI------F 136 (241)
Q Consensus 68 ~~~~~~VLElGcGtGl---~sl~la~~g~~V~~tD~~~~~~~l~~~~~n~~~n~~~~~~~~l~w~~~~~--~~------~ 136 (241)
..+||++|=-|++.|+ ++..+++.|++|+++|.+. .+.++.+.+.++.++.++.+...|..+... .. .
T Consensus 15 sL~gK~~lITGas~GIG~aia~~la~~Ga~Vvi~~~~~-~~~~~~~~~~~~~~g~~~~~~~~D~~~~~~v~~~~~~~~~~ 93 (272)
T d1g0oa_ 15 SLEGKVALVTGAGRGIGREMAMELGRRGCKVIVNYANS-TESAEEVVAAIKKNGSDAACVKANVGVVEDIVRMFEEAVKI 93 (272)
T ss_dssp CCTTCEEEETTTTSHHHHHHHHHHHHTTCEEEEEESSC-HHHHHHHHHHHHHTTCCEEEEECCTTCHHHHHHHHHHHHHH
T ss_pred CCCCCEEEEeCCCCHHHHHHHHHHHHcCCEEEEEeCCc-hHHHHHHHHHHHhhCCceeeEeCCCCCHHHHHHHHHHHHHH
Confidence 4689999999999884 5666777799999999987 367777777788888888777777765421 00 0
Q ss_pred CCCCcEEEEcCCcCC
Q 026274 137 DLNPNIILGADVFYD 151 (241)
Q Consensus 137 ~~~fDlIl~~dvly~ 151 (241)
-++.|+++.+--...
T Consensus 94 ~g~idilV~nag~~~ 108 (272)
T d1g0oa_ 94 FGKLDIVCSNSGVVS 108 (272)
T ss_dssp HSCCCEEEECCCCCC
T ss_pred hCCCCccccccccch
Confidence 137899887765443
|
| >d1vj0a2 c.2.1.1 (A:156-337) Hypothetical protein TM0436 {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Hypothetical protein TM0436 species: Thermotoga maritima [TaxId: 2336]
Probab=93.65 E-value=0.084 Score=39.32 Aligned_cols=46 Identities=37% Similarity=0.468 Sum_probs=33.9
Q ss_pred ccCCCCCCeEEEecCC-CCHHHHHHHH-hCC-EEEEEcCCCcHHHHHHHHH
Q 026274 65 QRYRFSGANVVELGAG-TSLPGLVAAK-VGS-NVTLTDDSNRIEVLKNMRR 112 (241)
Q Consensus 65 ~~~~~~~~~VLElGcG-tGl~sl~la~-~g~-~V~~tD~~~~~~~l~~~~~ 112 (241)
.....+|.+||=+||| .|+..+.+|+ .|+ +|+++|.++ +-++.+++
T Consensus 23 ~~~~~~G~~VlV~GaG~iG~~~~~~ak~~Ga~~Vi~~~~~~--~~~~~a~~ 71 (182)
T d1vj0a2 23 YPESFAGKTVVIQGAGPLGLFGVVIARSLGAENVIVIAGSP--NRLKLAEE 71 (182)
T ss_dssp CSSCCBTCEEEEECCSHHHHHHHHHHHHTTBSEEEEEESCH--HHHHHHHH
T ss_pred HhCCCCCCEEEEECCCccchhheeccccccccccccccccc--cccccccc
Confidence 3345578999999998 5777777776 487 899999995 45565544
|
| >d1nyta1 c.2.1.7 (A:102-271) Shikimate 5-dehydrogenase AroE {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Aminoacid dehydrogenase-like, C-terminal domain domain: Shikimate 5-dehydrogenase AroE species: Escherichia coli [TaxId: 562]
Probab=93.60 E-value=0.16 Score=37.43 Aligned_cols=83 Identities=16% Similarity=0.160 Sum_probs=49.2
Q ss_pred HHHHHHhccCCCCCCeEEEecCCCC--HHHHHHHHhCCEEEEEcCCCcHHHHHHHHHHHHHcCCceEEEEeecCCCCcCc
Q 026274 58 LAEYVWQQRYRFSGANVVELGAGTS--LPGLVAAKVGSNVTLTDDSNRIEVLKNMRRVCEMNKLNCRVMGLTWGFLDASI 135 (241)
Q Consensus 58 L~~~l~~~~~~~~~~~VLElGcGtG--l~sl~la~~g~~V~~tD~~~~~~~l~~~~~n~~~n~~~~~~~~l~w~~~~~~~ 135 (241)
+..-|.+.....++++||=||||-- .+...|++.|.+++.+..+. +-.+.+.+.....+ .+....|.+.
T Consensus 5 f~~~l~~~~~~~~~k~vlIlGaGGaarai~~al~~~g~~i~I~nRt~--~ka~~l~~~~~~~~---~~~~~~~~~~---- 75 (170)
T d1nyta1 5 LLSDLERLSFIRPGLRILLIGAGGASRGVLLPLLSLDCAVTITNRTV--SRAEELAKLFAHTG---SIQALSMDEL---- 75 (170)
T ss_dssp HHHHHHHHTCCCTTCEEEEECCSHHHHHHHHHHHHTTCEEEEECSSH--HHHHHHHHHTGGGS---SEEECCSGGG----
T ss_pred HHHHHHHcCCCCCCCEEEEECCcHHHHHHHHHhcccceEEEeccchH--HHHHHHHHHHhhcc---cccccccccc----
Confidence 3444555555678999999999944 23444556788999998884 33444443333222 2333445432
Q ss_pred CCCCCcEEEEcCCc
Q 026274 136 FDLNPNIILGADVF 149 (241)
Q Consensus 136 ~~~~fDlIl~~dvl 149 (241)
....+|+|+.+-++
T Consensus 76 ~~~~~dliIN~Tp~ 89 (170)
T d1nyta1 76 EGHEFDLIINATSS 89 (170)
T ss_dssp TTCCCSEEEECCSC
T ss_pred cccccceeeccccc
Confidence 22468999876554
|
| >d1booa_ c.66.1.11 (A:) m.PvuII N4 cytosine-specific DNA methyltransferase {Proteus vulgaris [TaxId: 585]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Type II DNA methylase domain: m.PvuII N4 cytosine-specific DNA methyltransferase species: Proteus vulgaris [TaxId: 585]
Probab=93.37 E-value=0.058 Score=43.32 Aligned_cols=56 Identities=18% Similarity=0.112 Sum_probs=43.7
Q ss_pred HHHHHHHhccCCCCCCeEEEecCCCCHHHHHHHHhCCEEEEEcCCCcHHHHHHHHHHHH
Q 026274 57 ILAEYVWQQRYRFSGANVVELGAGTSLPGLVAAKVGSNVTLTDDSNRIEVLKNMRRVCE 115 (241)
Q Consensus 57 ~L~~~l~~~~~~~~~~~VLElGcGtGl~sl~la~~g~~V~~tD~~~~~~~l~~~~~n~~ 115 (241)
.|.+++.... ..+|..|||-=||+|..++++.++|.+.+++|+++ +.++.+++.+.
T Consensus 238 ~L~~rlI~~~-s~~gdiVlDpF~GSGTT~~AA~~lgR~~Ig~El~~--~y~~~a~~Rl~ 293 (320)
T d1booa_ 238 KLPEFFIRML-TEPDDLVVDIFGGSNTTGLVAERESRKWISFEMKP--EYVAASAFRFL 293 (320)
T ss_dssp HHHHHHHHHH-CCTTCEEEETTCTTCHHHHHHHHTTCEEEEEESCH--HHHHHHHGGGS
T ss_pred HHHHHhhhhc-ccCCCEEEecCCCCcHHHHHHHHcCCcEEEEeCCH--HHHHHHHHHHH
Confidence 4444444332 23678999999999999999999999999999995 68887766543
|
| >d1bg6a2 c.2.1.6 (A:4-187) N-(1-D-carboxylethyl)-L-norvaline dehydrogenase {Arthrobacter, strain 1c [TaxId: 1663]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: N-(1-D-carboxylethyl)-L-norvaline dehydrogenase species: Arthrobacter, strain 1c [TaxId: 1663]
Probab=93.32 E-value=0.17 Score=37.09 Aligned_cols=116 Identities=16% Similarity=0.058 Sum_probs=60.1
Q ss_pred CeEEEecCC-CC-HHHHHHHHhCCEEEEEcCCCcHHHHHHHHHHHHHc----CCceEEEEeecCCCCcCcCCCCCcEEEE
Q 026274 72 ANVVELGAG-TS-LPGLVAAKVGSNVTLTDDSNRIEVLKNMRRVCEMN----KLNCRVMGLTWGFLDASIFDLNPNIILG 145 (241)
Q Consensus 72 ~~VLElGcG-tG-l~sl~la~~g~~V~~tD~~~~~~~l~~~~~n~~~n----~~~~~~~~l~w~~~~~~~~~~~fDlIl~ 145 (241)
++|-=+||| .| .++..|++.|++|++.|.++ +-++.++.+-... +...............+. -...|+|+.
T Consensus 2 k~iaIiGaG~~G~~~A~~l~~~G~~V~~~~r~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~-~~~aD~iii 78 (184)
T d1bg6a2 2 KTYAVLGLGNGGHAFAAYLALKGQSVLAWDIDA--QRIKEIQDRGAIIAEGPGLAGTAHPDLLTSDIGLA-VKDADVILI 78 (184)
T ss_dssp CEEEEECCSHHHHHHHHHHHHTTCEEEEECSCH--HHHHHHHHHTSEEEESSSCCEEECCSEEESCHHHH-HTTCSEEEE
T ss_pred CEEEEECccHHHHHHHHHHHHCCCEEEEEECCH--HHHHHHHHcCCCchhhhhhhhhhhhhhhhhhhHhH-hcCCCEEEE
Confidence 467778888 33 55677777899999999985 3454444321100 001000000000000000 136899887
Q ss_pred cCCcCCCccHHHHHHHHHHHhhcCCCeEEEEEeeccCchhHHHHHHHHcC
Q 026274 146 ADVFYDASAFDDLFATITYLLQSSPGSVFITTYHNRSGHHLIEFLMVKWG 195 (241)
Q Consensus 146 ~dvly~~~~~~~ll~~~~~lL~~~~~~~~~~~~~~r~~~~~~~~~~~~~g 195 (241)
+- .....+.+++.+..+++ ++..+++....-.........+...+
T Consensus 79 ~v---~~~~~~~~~~~i~~~l~--~~~~iv~~~g~~~~~~~~~~~~~~~~ 123 (184)
T d1bg6a2 79 VV---PAIHHASIAANIASYIS--EGQLIILNPGATGGALEFRKILRENG 123 (184)
T ss_dssp CS---CGGGHHHHHHHHGGGCC--TTCEEEESSCCSSHHHHHHHHHHHTT
T ss_pred EE---chhHHHHHHHHhhhccC--CCCEEEEeCCCCccHHHHHHHHHHhc
Confidence 63 23467888888888886 55555543222222223334444444
|
| >d1kola2 c.2.1.1 (A:161-355) Formaldehyde dehydrogenase {Pseudomonas putida [TaxId: 303]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Formaldehyde dehydrogenase species: Pseudomonas putida [TaxId: 303]
Probab=93.30 E-value=0.1 Score=39.58 Aligned_cols=47 Identities=23% Similarity=0.258 Sum_probs=35.0
Q ss_pred hccCCCCCCeEEEecCCC-CHHHHHHHH-hCC-EEEEEcCCCcHHHHHHHHH
Q 026274 64 QQRYRFSGANVVELGAGT-SLPGLVAAK-VGS-NVTLTDDSNRIEVLKNMRR 112 (241)
Q Consensus 64 ~~~~~~~~~~VLElGcGt-Gl~sl~la~-~g~-~V~~tD~~~~~~~l~~~~~ 112 (241)
+.....+|.+||-+|||. |+.++.+|+ .|+ +|+++|.++ +-++.+++
T Consensus 19 ~~a~v~~G~tVlV~GaG~vGl~a~~~ak~~ga~~Vi~~d~~~--~rl~~a~~ 68 (195)
T d1kola2 19 VTAGVGPGSTVYVAGAGPVGLAAAASARLLGAAVVIVGDLNP--ARLAHAKA 68 (195)
T ss_dssp HHTTCCTTCEEEEECCSHHHHHHHHHHHHTTCSEEEEEESCH--HHHHHHHH
T ss_pred HHhCCCCCCEEEEECcCHHHHHHHHHHHhhcccceeeecccc--hhhHhhhh
Confidence 344566789999999995 777777776 466 899999995 46665554
|
| >d1x1ta1 c.2.1.2 (A:1-260) D(-)-3-hydroxybutyrate dehydrogenase {Pseudomonas fragi [TaxId: 296]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: D(-)-3-hydroxybutyrate dehydrogenase species: Pseudomonas fragi [TaxId: 296]
Probab=93.06 E-value=0.24 Score=39.03 Aligned_cols=82 Identities=12% Similarity=0.128 Sum_probs=55.5
Q ss_pred CCCCeEEEecCCCCH---HHHHHHHhCCEEEEEcCCCcHHHHHHHHHHH-HHcCCceEEEEeecCCCCc--CcC------
Q 026274 69 FSGANVVELGAGTSL---PGLVAAKVGSNVTLTDDSNRIEVLKNMRRVC-EMNKLNCRVMGLTWGFLDA--SIF------ 136 (241)
Q Consensus 69 ~~~~~VLElGcGtGl---~sl~la~~g~~V~~tD~~~~~~~l~~~~~n~-~~n~~~~~~~~l~w~~~~~--~~~------ 136 (241)
.+||.+|=-|++.|+ ++..+++.|++|+++|.++ .+.++.+...+ ...+.++.+...|..+... ...
T Consensus 2 L~gK~alITGas~GIG~aiA~~la~~Ga~V~~~~r~~-~~~~~~~~~~~~~~~g~~~~~~~~Dv~~~~~v~~~~~~~~~~ 80 (260)
T d1x1ta1 2 LKGKVAVVTGSTSGIGLGIATALAAQGADIVLNGFGD-AAEIEKVRAGLAAQHGVKVLYDGADLSKGEAVRGLVDNAVRQ 80 (260)
T ss_dssp CTTCEEEETTCSSHHHHHHHHHHHHTTCEEEEECCSC-HHHHHHHHHHHHHHHTSCEEEECCCTTSHHHHHHHHHHHHHH
T ss_pred CCcCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEeCCc-HHHHHHHHHHHHHhcCCcEEEEECCCCCHHHHHHHHHHHHHH
Confidence 478999989998884 4556777899999999986 35666666554 3446677777777765431 111
Q ss_pred CCCCcEEEEcCCcCC
Q 026274 137 DLNPNIILGADVFYD 151 (241)
Q Consensus 137 ~~~fDlIl~~dvly~ 151 (241)
-++.|+++.+--+.+
T Consensus 81 ~G~iDiLVnnAG~~~ 95 (260)
T d1x1ta1 81 MGRIDILVNNAGIQH 95 (260)
T ss_dssp HSCCSEEEECCCCCC
T ss_pred hCCCcEEEeeccccc
Confidence 137899886654443
|
| >d1jqba2 c.2.1.1 (A:1140-1313) Bacterial secondary alcohol dehydrogenase {Clostridium beijerinckii [TaxId: 1520]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Bacterial secondary alcohol dehydrogenase species: Clostridium beijerinckii [TaxId: 1520]
Probab=92.88 E-value=0.12 Score=38.34 Aligned_cols=46 Identities=22% Similarity=0.325 Sum_probs=34.0
Q ss_pred hccCCCCCCeEEEecCC-CCHHHHHHHHh-CC-EEEEEcCCCcHHHHHHHH
Q 026274 64 QQRYRFSGANVVELGAG-TSLPGLVAAKV-GS-NVTLTDDSNRIEVLKNMR 111 (241)
Q Consensus 64 ~~~~~~~~~~VLElGcG-tGl~sl~la~~-g~-~V~~tD~~~~~~~l~~~~ 111 (241)
+.....+|.+||=+||| .|+.++.+++. |+ +|+++|.++ +-++.++
T Consensus 21 ~~a~~~~g~~VlI~GaG~vGl~~~q~ak~~Ga~~Vi~~d~~~--~r~~~a~ 69 (174)
T d1jqba2 21 ELADIEMGSSVVVIGIGAVGLMGIAGAKLRGAGRIIGVGSRP--ICVEAAK 69 (174)
T ss_dssp HHTTCCTTCCEEEECCSHHHHHHHHHHHTTTCSCEEEECCCH--HHHHHHH
T ss_pred HHhCCCCCCEEEEEcCCcchhhhhhhhhcccccccccccchh--hhHHHHH
Confidence 33455678899999998 47888888874 76 799999995 3444444
|
| >d1zkda1 c.66.1.52 (A:2-366) Hypothetical protein RPA4359 {Rhodopseudomonas palustris [TaxId: 1076]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: RPA4359-like domain: Hypothetical protein RPA4359 species: Rhodopseudomonas palustris [TaxId: 1076]
Probab=92.86 E-value=0.2 Score=41.75 Aligned_cols=55 Identities=16% Similarity=0.169 Sum_probs=32.5
Q ss_pred HHHHHHHHhc---cCCCCCCeEEEecCCCCHHHHHHHHh---------CCEEEEEcCCCcHHHHHHHHHH
Q 026274 56 VILAEYVWQQ---RYRFSGANVVELGAGTSLPGLVAAKV---------GSNVTLTDDSNRIEVLKNMRRV 113 (241)
Q Consensus 56 ~~L~~~l~~~---~~~~~~~~VLElGcGtGl~sl~la~~---------g~~V~~tD~~~~~~~l~~~~~n 113 (241)
..++.|+... ....+..+|+|+|+|+|.++.-+.+. ..++..++.++ .+...+++
T Consensus 62 ~~ia~~~~~~~~~~~~~~~~~ivE~GaG~G~La~dil~~l~~~~~~~~~~~~~~vE~s~---~L~~~Q~~ 128 (365)
T d1zkda1 62 ELLGLWSASVWKAADEPQTLRLIEIGPGRGTMMADALRALRVLPILYQSLSVHLVEINP---VLRQKQQT 128 (365)
T ss_dssp HHHHHHHHHHHHHTTCCSSEEEEEECCTTSHHHHHHHHHHTTSHHHHTTEEEEEECCCH---HHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCCccceEEecCCcccHHHHhhhhhhcccccccccceEEEeccch---hHHHHHHH
Confidence 3445555432 12223457999999999765544332 12689999995 44444443
|
| >d1luaa1 c.2.1.7 (A:98-288) Methylene-tetrahydromethanopterin dehydrogenase {Methylobacterium extorquens [TaxId: 408]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Aminoacid dehydrogenase-like, C-terminal domain domain: Methylene-tetrahydromethanopterin dehydrogenase species: Methylobacterium extorquens [TaxId: 408]
Probab=92.36 E-value=0.24 Score=37.16 Aligned_cols=82 Identities=11% Similarity=0.020 Sum_probs=51.4
Q ss_pred hccCCCCCCeEEEecCCCC---HHHHHHHHhCCEEEEEcCCCcHHHHHHHHHHHHHcCCceEEEEeecCCCCc-CcCCCC
Q 026274 64 QQRYRFSGANVVELGAGTS---LPGLVAAKVGSNVTLTDDSNRIEVLKNMRRVCEMNKLNCRVMGLTWGFLDA-SIFDLN 139 (241)
Q Consensus 64 ~~~~~~~~~~VLElGcGtG---l~sl~la~~g~~V~~tD~~~~~~~l~~~~~n~~~n~~~~~~~~l~w~~~~~-~~~~~~ 139 (241)
......+||+||=.|++.| .++..+++.|++|++++.++ +-++.+.+.+..+. .+.+...|..+... ...-..
T Consensus 16 ~~~~~l~gK~vlItGasgGIG~~ia~~la~~G~~V~~~~r~~--~~~~~~~~~~~~~~-~~~~~~~d~~~~~~~~~~~~~ 92 (191)
T d1luaa1 16 AAGGSVKGKKAVVLAGTGPVGMRSAALLAGEGAEVVLCGRKL--DKAQAAADSVNKRF-KVNVTAAETADDASRAEAVKG 92 (191)
T ss_dssp HTTSCCTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESSH--HHHHHHHHHHHHHH-TCCCEEEECCSHHHHHHHTTT
T ss_pred HcCCCCCCCEEEEECCCHHHHHHHHHHHHhhccchhhcccch--HHHHHHHHHHHhcc-chhhhhhhcccHHHHHHHhcC
Confidence 3356789999999998876 44566777799999999995 56666665554432 22233444433211 001136
Q ss_pred CcEEEEcCC
Q 026274 140 PNIILGADV 148 (241)
Q Consensus 140 fDlIl~~dv 148 (241)
.|+++.+--
T Consensus 93 iDilin~Ag 101 (191)
T d1luaa1 93 AHFVFTAGA 101 (191)
T ss_dssp CSEEEECCC
T ss_pred cCeeeecCc
Confidence 788886643
|
| >d1l7da1 c.2.1.4 (A:144-326) Nicotinamide nucleotide transhydrogenase dI component {Rhodospirillum rubrum [TaxId: 1085]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Formate/glycerate dehydrogenases, NAD-domain domain: Nicotinamide nucleotide transhydrogenase dI component species: Rhodospirillum rubrum [TaxId: 1085]
Probab=92.00 E-value=0.067 Score=40.52 Aligned_cols=41 Identities=27% Similarity=0.398 Sum_probs=32.0
Q ss_pred CCCeEEEecCC-CCHHHHHHHH-hCCEEEEEcCCCcHHHHHHHHH
Q 026274 70 SGANVVELGAG-TSLPGLVAAK-VGSNVTLTDDSNRIEVLKNMRR 112 (241)
Q Consensus 70 ~~~~VLElGcG-tGl~sl~la~-~g~~V~~tD~~~~~~~l~~~~~ 112 (241)
+..+||=||+| .|+.++..|. +|++|++.|.++ +.++.++.
T Consensus 28 ~pa~VvViGaGvaG~~Aa~~A~~lGA~V~v~D~~~--~~~~~l~~ 70 (183)
T d1l7da1 28 PPARVLVFGVGVAGLQAIATAKRLGAVVMATDVRA--ATKEQVES 70 (183)
T ss_dssp CCCEEEEECCSHHHHHHHHHHHHTTCEEEEECSCS--TTHHHHHH
T ss_pred CCcEEEEEcCcHHHHHHHHHHHHcCCEEEEEeccH--HHHHHHHH
Confidence 55789999999 5677777665 699999999997 36666654
|
| >d1fmca_ c.2.1.2 (A:) 7-alpha-hydroxysteroid dehydrogenase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: 7-alpha-hydroxysteroid dehydrogenase species: Escherichia coli [TaxId: 562]
Probab=91.95 E-value=0.24 Score=38.97 Aligned_cols=82 Identities=12% Similarity=0.074 Sum_probs=57.2
Q ss_pred CCCCCeEEEecCCCCH---HHHHHHHhCCEEEEEcCCCcHHHHHHHHHHHHHcCCceEEEEeecCCCCc--CcC------
Q 026274 68 RFSGANVVELGAGTSL---PGLVAAKVGSNVTLTDDSNRIEVLKNMRRVCEMNKLNCRVMGLTWGFLDA--SIF------ 136 (241)
Q Consensus 68 ~~~~~~VLElGcGtGl---~sl~la~~g~~V~~tD~~~~~~~l~~~~~n~~~n~~~~~~~~l~w~~~~~--~~~------ 136 (241)
.++||.+|=-|++.|+ ++..+++.|++|+++|.++ +-++.+.+.++..+.++.+...|..+... ...
T Consensus 8 ~L~gK~alITGas~GIG~aia~~la~~Ga~V~~~~r~~--~~~~~~~~~l~~~g~~~~~~~~Dvs~~~~~~~~~~~~~~~ 85 (255)
T d1fmca_ 8 RLDGKCAIITGAGAGIGKEIAITFATAGASVVVSDINA--DAANHVVDEIQQLGGQAFACRCDITSEQELSALADFAISK 85 (255)
T ss_dssp CCTTCEEEETTTTSHHHHHHHHHHHTTTCEEEEEESCH--HHHHHHHHHHHHTTCCEEEEECCTTCHHHHHHHHHHHHHH
T ss_pred CCCCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEECCH--HHHHHHHHHHHHcCCcEEEEEccCCCHHHHHHHHHHHHHH
Confidence 3689999999988774 3455666799999999985 57777777777777777777777665421 000
Q ss_pred CCCCcEEEEcCCcCC
Q 026274 137 DLNPNIILGADVFYD 151 (241)
Q Consensus 137 ~~~fDlIl~~dvly~ 151 (241)
-++.|+++.+--+..
T Consensus 86 ~g~iDilvnnAG~~~ 100 (255)
T d1fmca_ 86 LGKVDILVNNAGGGG 100 (255)
T ss_dssp HSSCCEEEECCCCCC
T ss_pred cCCCCEeeeCCcCCC
Confidence 137899887654443
|
| >d1geea_ c.2.1.2 (A:) Glucose dehydrogenase {Bacillus megaterium [TaxId: 1404]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Glucose dehydrogenase species: Bacillus megaterium [TaxId: 1404]
Probab=91.80 E-value=0.27 Score=38.87 Aligned_cols=83 Identities=11% Similarity=0.026 Sum_probs=59.0
Q ss_pred CCCCCeEEEecCCCCH---HHHHHHHhCCEEEEEcCCCcHHHHHHHHHHHHHcCCceEEEEeecCCCCc--CcC------
Q 026274 68 RFSGANVVELGAGTSL---PGLVAAKVGSNVTLTDDSNRIEVLKNMRRVCEMNKLNCRVMGLTWGFLDA--SIF------ 136 (241)
Q Consensus 68 ~~~~~~VLElGcGtGl---~sl~la~~g~~V~~tD~~~~~~~l~~~~~n~~~n~~~~~~~~l~w~~~~~--~~~------ 136 (241)
.++||.+|=-|++.|+ ++..+++.|++|+++|.+. .+.++.+.+.++..+.++.+...|..+... ...
T Consensus 4 dL~gK~alITGas~GIG~aia~~la~~G~~Vv~~~r~~-~~~~~~~~~~~~~~g~~~~~~~~Dvt~~~~v~~~~~~~~~~ 82 (261)
T d1geea_ 4 DLEGKVVVITGSSTGLGKSMAIRFATEKAKVVVNYRSK-EDEANSVLEEIKKVGGEAIAVKGDVTVESDVINLVQSAIKE 82 (261)
T ss_dssp GGTTCEEEETTCSSHHHHHHHHHHHHTTCEEEEEESSC-HHHHHHHHHHHHHTTCEEEEEECCTTSHHHHHHHHHHHHHH
T ss_pred CCCCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEeCCc-HHHHHHHHHHHHhcCCcEEEEEccCCCHHHHHHHHHHHHHH
Confidence 4689999999998883 4455666799999999986 356777777777777777777777765431 111
Q ss_pred CCCCcEEEEcCCcCC
Q 026274 137 DLNPNIILGADVFYD 151 (241)
Q Consensus 137 ~~~fDlIl~~dvly~ 151 (241)
-++.|+++.+--+..
T Consensus 83 ~G~iDiLVnnAG~~~ 97 (261)
T d1geea_ 83 FGKLDVMINNAGLEN 97 (261)
T ss_dssp HSCCCEEEECCCCCC
T ss_pred hCCCCEeeccceecC
Confidence 137899987765544
|
| >d1ja9a_ c.2.1.2 (A:) 1,3,6,8-tetrahydroxynaphthalene reductase {Rice blast fungus (Magnaporthe grisea) [TaxId: 148305]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: 1,3,6,8-tetrahydroxynaphthalene reductase species: Rice blast fungus (Magnaporthe grisea) [TaxId: 148305]
Probab=91.62 E-value=0.34 Score=38.02 Aligned_cols=84 Identities=10% Similarity=0.048 Sum_probs=59.5
Q ss_pred CCCCCeEEEecCCCC---HHHHHHHHhCCEEEEEcCCCcHHHHHHHHHHHHHcCCceEEEEeecCCCCc--CcC------
Q 026274 68 RFSGANVVELGAGTS---LPGLVAAKVGSNVTLTDDSNRIEVLKNMRRVCEMNKLNCRVMGLTWGFLDA--SIF------ 136 (241)
Q Consensus 68 ~~~~~~VLElGcGtG---l~sl~la~~g~~V~~tD~~~~~~~l~~~~~n~~~n~~~~~~~~l~w~~~~~--~~~------ 136 (241)
+..||.||=-|++.| -++..+++.|++|++++... .+.++.+.+.+...+.++.....|..+... ...
T Consensus 3 ~L~GK~alITGas~GIG~aia~~la~~G~~Vvi~~~~~-~~~~~~~~~~~~~~g~~~~~~~~D~~~~~~v~~~~~~~~~~ 81 (259)
T d1ja9a_ 3 PLAGKVALTTGAGRGIGRGIAIELGRRGASVVVNYGSS-SKAAEEVVAELKKLGAQGVAIQADISKPSEVVALFDKAVSH 81 (259)
T ss_dssp TTTTCEEEETTTTSHHHHHHHHHHHHTTCEEEEEESSC-HHHHHHHHHHHHHTTCCEEEEECCTTSHHHHHHHHHHHHHH
T ss_pred CCCCCEEEEeCCCCHHHHHHHHHHHHcCCEEEEEcCCC-hHHHHHHHHHHHHcCCCceEecCCCCCHHHHHHHHHHHHHH
Confidence 467999999997766 45556667799999887665 467788888888888888778877765321 000
Q ss_pred CCCCcEEEEcCCcCCC
Q 026274 137 DLNPNIILGADVFYDA 152 (241)
Q Consensus 137 ~~~fDlIl~~dvly~~ 152 (241)
-+..|+++.+--+.+.
T Consensus 82 ~g~idilinnag~~~~ 97 (259)
T d1ja9a_ 82 FGGLDFVMSNSGMEVW 97 (259)
T ss_dssp HSCEEEEECCCCCCCC
T ss_pred cCCCcEEEeccccccc
Confidence 1368998877665543
|
| >d1d1ta2 c.2.1.1 (A:163-338) Alcohol dehydrogenase {Human (Homo sapiens), different isozymes [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Alcohol dehydrogenase species: Human (Homo sapiens), different isozymes [TaxId: 9606]
Probab=91.59 E-value=0.2 Score=37.23 Aligned_cols=111 Identities=10% Similarity=0.078 Sum_probs=61.0
Q ss_pred cHHHHHHHH-HhccCCCCCCeEEEecCC-CCHHHHHHHHh-CC-EEEEEcCCCcHHHHHHHHHHHHHcCCceEEEEeecC
Q 026274 54 CSVILAEYV-WQQRYRFSGANVVELGAG-TSLPGLVAAKV-GS-NVTLTDDSNRIEVLKNMRRVCEMNKLNCRVMGLTWG 129 (241)
Q Consensus 54 ~s~~L~~~l-~~~~~~~~~~~VLElGcG-tGl~sl~la~~-g~-~V~~tD~~~~~~~l~~~~~n~~~n~~~~~~~~l~w~ 129 (241)
|+...+... .......+|.+||=.||| .|+.++.+++. |+ +|+++|.++ +-++.+++ .+.... .++.
T Consensus 12 Ca~~T~~~Av~~~~~~~~g~tVlI~G~GgvGl~ai~~ak~~G~~~Vi~vd~~~--~kl~~Ak~----~GA~~~---in~~ 82 (176)
T d1d1ta2 12 CGFSTGYGAAVKTGKVKPGSTCVVFGLGGVGLSVIMGCKSAGASRIIGIDLNK--DKFEKAMA----VGATEC---ISPK 82 (176)
T ss_dssp THHHHHHHHHHTTSCCCTTCEEEEECCSHHHHHHHHHHHHTTCSEEEEECSCG--GGHHHHHH----HTCSEE---ECGG
T ss_pred hHHHHHHHHHHHhhCCCCCCEEEEECCCchhHHHHHHHHHcCCceEEEecCcH--HHHHHHHh----cCCcEE---ECcc
Confidence 344443433 233456678899999998 56777777764 65 899999996 35555554 343322 2222
Q ss_pred CCCcC-------cCCCCCcEEEEcCCcCCCccHHHHHHHHHHHhhcCCCeEEEEEee
Q 026274 130 FLDAS-------IFDLNPNIILGADVFYDASAFDDLFATITYLLQSSPGSVFITTYH 179 (241)
Q Consensus 130 ~~~~~-------~~~~~fDlIl~~dvly~~~~~~~ll~~~~~lL~~~~~~~~~~~~~ 179 (241)
+.... .....+|+++- .......+...+..+.+ +.|.++++...
T Consensus 83 ~~~~~~~~~~~~~~g~G~d~vi~-----~~g~~~~~~~a~~~~~~-~~G~~v~vG~~ 133 (176)
T d1d1ta2 83 DSTKPISEVLSEMTGNNVGYTFE-----VIGHLETMIDALASCHM-NYGTSVVVGVP 133 (176)
T ss_dssp GCSSCHHHHHHHHHTSCCCEEEE-----CSCCHHHHHHHHTTSCT-TTCEEEECSCC
T ss_pred ccchHHHHHHHHhccccceEEEE-----eCCchHHHHHHHHHhhc-CCeEEEEEEcc
Confidence 22111 12346888873 23334344444444443 33556665543
|
| >d1xg5a_ c.2.1.2 (A:) Putative dehydrogenase ARPG836 (MGC4172) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Putative dehydrogenase ARPG836 (MGC4172) species: Human (Homo sapiens) [TaxId: 9606]
Probab=91.35 E-value=0.36 Score=37.97 Aligned_cols=83 Identities=11% Similarity=0.092 Sum_probs=55.9
Q ss_pred CCCCCCeEEEecCCCCH---HHHHHHHhCCEEEEEcCCCcHHHHHHHHHHHHHcCC--ceEEEEeecCCCCc--CcC---
Q 026274 67 YRFSGANVVELGAGTSL---PGLVAAKVGSNVTLTDDSNRIEVLKNMRRVCEMNKL--NCRVMGLTWGFLDA--SIF--- 136 (241)
Q Consensus 67 ~~~~~~~VLElGcGtGl---~sl~la~~g~~V~~tD~~~~~~~l~~~~~n~~~n~~--~~~~~~l~w~~~~~--~~~--- 136 (241)
..++||.+|=-|++.|+ ++..+++.|++|+++|.++ +-++.+.+.+...+. ++.+...|..+... ...
T Consensus 6 ~~lk~Kv~lITGas~GIG~aiA~~la~~G~~Vv~~~r~~--~~l~~~~~~l~~~~~~~~~~~~~~Dls~~~~v~~~v~~~ 83 (257)
T d1xg5a_ 6 ERWRDRLALVTGASGGIGAAVARALVQQGLKVVGCARTV--GNIEELAAECKSAGYPGTLIPYRCDLSNEEDILSMFSAI 83 (257)
T ss_dssp GGGTTCEEEEESTTSHHHHHHHHHHHHTTCEEEEEESCH--HHHHHHHHHHHHTTCSSEEEEEECCTTCHHHHHHHHHHH
T ss_pred CCCCCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCH--HHHHHHHHHHHhcCCCceEEEEEccCCCHHHHHHHHHHH
Confidence 34789999999999884 3455666799999999985 577777666665543 45566667665321 000
Q ss_pred ---CCCCcEEEEcCCcCC
Q 026274 137 ---DLNPNIILGADVFYD 151 (241)
Q Consensus 137 ---~~~fDlIl~~dvly~ 151 (241)
-++.|+++.+--...
T Consensus 84 ~~~~g~iD~lVnnAg~~~ 101 (257)
T d1xg5a_ 84 RSQHSGVDICINNAGLAR 101 (257)
T ss_dssp HHHHCCCSEEEECCCCCC
T ss_pred HHhcCCCCEEEecccccC
Confidence 137899887655443
|
| >d1q7ba_ c.2.1.2 (A:) beta-keto acyl carrier protein reductase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: beta-keto acyl carrier protein reductase species: Escherichia coli [TaxId: 562]
Probab=91.27 E-value=0.43 Score=37.16 Aligned_cols=78 Identities=17% Similarity=0.094 Sum_probs=49.9
Q ss_pred CCCCeEEEecCCCCH---HHHHHHHhCCEEEEEcCCCcHHHHHHHHHHHHHcCCceEEEEeecCCCCc--CcC------C
Q 026274 69 FSGANVVELGAGTSL---PGLVAAKVGSNVTLTDDSNRIEVLKNMRRVCEMNKLNCRVMGLTWGFLDA--SIF------D 137 (241)
Q Consensus 69 ~~~~~VLElGcGtGl---~sl~la~~g~~V~~tD~~~~~~~l~~~~~n~~~n~~~~~~~~l~w~~~~~--~~~------~ 137 (241)
++||.+|=-|++.|+ ++..+++.|++|+++|.++ +.++.+.+.+ +.+......|..+... ... -
T Consensus 2 l~gK~alITGas~GIG~a~a~~l~~~G~~Vv~~~r~~--~~l~~~~~~~---~~~~~~~~~Dv~~~~~v~~~~~~~~~~~ 76 (243)
T d1q7ba_ 2 FEGKIALVTGASRGIGRAIAETLAARGAKVIGTATSE--NGAQAISDYL---GANGKGLMLNVTDPASIESVLEKIRAEF 76 (243)
T ss_dssp CTTCEEEESSCSSHHHHHHHHHHHHTTCEEEEEESSH--HHHHHHHHHH---GGGEEEEECCTTCHHHHHHHHHHHHHHT
T ss_pred CCCCEEEEeCCCCHHHHHHHHHHHHcCCEEEEEeCCH--HHHHHHHHHh---CCCCcEEEEEecCHHHhhhhhhhhhccc
Confidence 578999999998874 4555666799999999995 4565555444 2344555666554321 000 1
Q ss_pred CCCcEEEEcCCcCC
Q 026274 138 LNPNIILGADVFYD 151 (241)
Q Consensus 138 ~~fDlIl~~dvly~ 151 (241)
.+.|+++.+--+..
T Consensus 77 g~iDilVnnAg~~~ 90 (243)
T d1q7ba_ 77 GEVDILVNNAGITR 90 (243)
T ss_dssp CSCSEEEECCCCCC
T ss_pred CCcceehhhhhhcc
Confidence 37899887654443
|
| >d1h5qa_ c.2.1.2 (A:) Mannitol dehydrogenase {Mushroom (Agaricus bisporus) [TaxId: 5341]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Mannitol dehydrogenase species: Mushroom (Agaricus bisporus) [TaxId: 5341]
Probab=91.23 E-value=0.22 Score=39.21 Aligned_cols=83 Identities=11% Similarity=0.038 Sum_probs=55.4
Q ss_pred CCCCCeEEEecCCCCH---HHHHHHHhCCEEEEEcCCCcHHHHHHHHHHHHHcCCceEEEEeecCCCCc--Cc------C
Q 026274 68 RFSGANVVELGAGTSL---PGLVAAKVGSNVTLTDDSNRIEVLKNMRRVCEMNKLNCRVMGLTWGFLDA--SI------F 136 (241)
Q Consensus 68 ~~~~~~VLElGcGtGl---~sl~la~~g~~V~~tD~~~~~~~l~~~~~n~~~n~~~~~~~~l~w~~~~~--~~------~ 136 (241)
.++||++|=-|++.|+ ++..+++.|++|+++|.++. ...+.+++..+..+.++.....|..+... .. .
T Consensus 6 ~l~gK~alITGas~GIG~aia~~la~~Ga~V~i~~r~~~-~~~~~~~~~~~~~g~~~~~~~~Dv~~~~~v~~~~~~~~~~ 84 (260)
T d1h5qa_ 6 SFVNKTIIVTGGNRGIGLAFTRAVAAAGANVAVIYRSAA-DAVEVTEKVGKEFGVKTKAYQCDVSNTDIVTKTIQQIDAD 84 (260)
T ss_dssp CCTTEEEEEETTTSHHHHHHHHHHHHTTEEEEEEESSCT-THHHHHHHHHHHHTCCEEEEECCTTCHHHHHHHHHHHHHH
T ss_pred cCCCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCHH-HHHHHHHHHHHHhCCceEEEEccCCCHHHHHHHHHHHHHH
Confidence 4689999999988773 45667777999999999973 34444444445556777777777765431 00 0
Q ss_pred CCCCcEEEEcCCcCC
Q 026274 137 DLNPNIILGADVFYD 151 (241)
Q Consensus 137 ~~~fDlIl~~dvly~ 151 (241)
-++.|+++.+--+..
T Consensus 85 ~g~iDilVnnAg~~~ 99 (260)
T d1h5qa_ 85 LGPISGLIANAGVSV 99 (260)
T ss_dssp SCSEEEEEECCCCCC
T ss_pred hCCCcEecccccccc
Confidence 147899887755543
|
| >d1rjwa2 c.2.1.1 (A:138-305) Alcohol dehydrogenase {Bacillus stearothermophilus [TaxId: 1422]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Alcohol dehydrogenase species: Bacillus stearothermophilus [TaxId: 1422]
Probab=90.93 E-value=0.4 Score=34.54 Aligned_cols=45 Identities=27% Similarity=0.226 Sum_probs=31.9
Q ss_pred cCCCCCCeEEEecCC-CCHHHHHHHH-hCCEEEEEcCCCcHHHHHHHHH
Q 026274 66 RYRFSGANVVELGAG-TSLPGLVAAK-VGSNVTLTDDSNRIEVLKNMRR 112 (241)
Q Consensus 66 ~~~~~~~~VLElGcG-tGl~sl~la~-~g~~V~~tD~~~~~~~l~~~~~ 112 (241)
....++.+||=.||| .|+..+.+++ .|++|+++|.++ +-++.+++
T Consensus 23 ~~~~~g~~vlv~G~G~iG~~a~~~a~~~g~~v~~~~~~~--~r~~~~k~ 69 (168)
T d1rjwa2 23 TGAKPGEWVAIYGIGGLGHVAVQYAKAMGLNVVAVDIGD--EKLELAKE 69 (168)
T ss_dssp HTCCTTCEEEEECCSTTHHHHHHHHHHTTCEEEEECSCH--HHHHHHHH
T ss_pred hCCCCCCEEEEeecccchhhhhHHHhcCCCeEeccCCCH--HHhhhhhh
Confidence 345678899999998 5566666666 478999999985 34444443
|
| >d2gdza1 c.2.1.2 (A:3-256) 15-hydroxyprostaglandin dehydrogenase, PGDH {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: 15-hydroxyprostaglandin dehydrogenase, PGDH species: Human (Homo sapiens) [TaxId: 9606]
Probab=90.83 E-value=0.39 Score=37.55 Aligned_cols=85 Identities=12% Similarity=0.057 Sum_probs=55.7
Q ss_pred CCCeEEEecCCCCH---HHHHHHHhCCEEEEEcCCCcHHHHHHHHHHHHHc--CCceEEEEeecCCCCc--CcC------
Q 026274 70 SGANVVELGAGTSL---PGLVAAKVGSNVTLTDDSNRIEVLKNMRRVCEMN--KLNCRVMGLTWGFLDA--SIF------ 136 (241)
Q Consensus 70 ~~~~VLElGcGtGl---~sl~la~~g~~V~~tD~~~~~~~l~~~~~n~~~n--~~~~~~~~l~w~~~~~--~~~------ 136 (241)
.||.+|=-|++.|+ ++..+++.|++|+++|.++ +-++.+...+... +.++.+...|..+... ...
T Consensus 2 ~GKvalITGas~GIG~aia~~la~~Ga~V~i~~r~~--~~~~~~~~~l~~~~~~~~~~~~~~Dv~~~~~v~~~~~~~~~~ 79 (254)
T d2gdza1 2 NGKVALVTGAAQGIGRAFAEALLLKGAKVALVDWNL--EAGVQCKAALHEQFEPQKTLFIQCDVADQQQLRDTFRKVVDH 79 (254)
T ss_dssp TTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCH--HHHHHHHHHHTTTSCGGGEEEEECCTTSHHHHHHHHHHHHHH
T ss_pred CCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCH--HHHHHHHHHHHHhcCCCcEEEEEeecCCHHHHHHHHHHHHHH
Confidence 68899999988773 3555666799999999995 4555555444332 3456667777765431 100
Q ss_pred CCCCcEEEEcCCcCCCccHH
Q 026274 137 DLNPNIILGADVFYDASAFD 156 (241)
Q Consensus 137 ~~~fDlIl~~dvly~~~~~~ 156 (241)
-++.|+++.+--+......+
T Consensus 80 ~G~iDilVnnAg~~~~~~~~ 99 (254)
T d2gdza1 80 FGRLDILVNNAGVNNEKNWE 99 (254)
T ss_dssp HSCCCEEEECCCCCCSSSHH
T ss_pred cCCcCeecccccccccccch
Confidence 13789999887776665433
|
| >d1e3ia2 c.2.1.1 (A:168-341) Alcohol dehydrogenase {Mouse (Mus musculus), class II [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Alcohol dehydrogenase species: Mouse (Mus musculus), class II [TaxId: 10090]
Probab=90.82 E-value=0.26 Score=36.49 Aligned_cols=100 Identities=14% Similarity=0.118 Sum_probs=60.5
Q ss_pred hccCCCCCCeEEEecCCC-CHHHHHHHHh-CC-EEEEEcCCCcHHHHHHHHHHHHHcCCceEEEEeecCCCCc-------
Q 026274 64 QQRYRFSGANVVELGAGT-SLPGLVAAKV-GS-NVTLTDDSNRIEVLKNMRRVCEMNKLNCRVMGLTWGFLDA------- 133 (241)
Q Consensus 64 ~~~~~~~~~~VLElGcGt-Gl~sl~la~~-g~-~V~~tD~~~~~~~l~~~~~n~~~n~~~~~~~~l~w~~~~~------- 133 (241)
+.....+|.+||=+|||. |+.++.+++. |+ .|+++|.++. -++.+++ .+.... .+......
T Consensus 22 ~~a~v~~G~~VlV~G~G~iGl~a~~~ak~~Ga~~Vi~~d~~~~--r~~~a~~----~Ga~~~---i~~~~~~~~~~~~~~ 92 (174)
T d1e3ia2 22 NTAKVTPGSTCAVFGLGCVGLSAIIGCKIAGASRIIAIDINGE--KFPKAKA----LGATDC---LNPRELDKPVQDVIT 92 (174)
T ss_dssp TTSCCCTTCEEEEECCSHHHHHHHHHHHHTTCSEEEEECSCGG--GHHHHHH----TTCSEE---ECGGGCSSCHHHHHH
T ss_pred HhhCCCCCCEEEEECCChHHHHHHHHHHHhCCceeeeeccchH--HHHHHHH----hCCCcc---cCCccchhhhhhhHh
Confidence 334556788999999994 8888888885 77 7999999963 3433333 343321 12211111
Q ss_pred CcCCCCCcEEEEcCCcCCCccHHHHHHHHHHHhhcCCCeEEEEEe
Q 026274 134 SIFDLNPNIILGADVFYDASAFDDLFATITYLLQSSPGSVFITTY 178 (241)
Q Consensus 134 ~~~~~~fDlIl~~dvly~~~~~~~ll~~~~~lL~~~~~~~~~~~~ 178 (241)
......+|+++ ...-.+..+....++++++.|.++++..
T Consensus 93 ~~~~~G~d~vi------e~~G~~~~~~~a~~~~~~g~G~~v~vG~ 131 (174)
T d1e3ia2 93 ELTAGGVDYSL------DCAGTAQTLKAAVDCTVLGWGSCTVVGA 131 (174)
T ss_dssp HHHTSCBSEEE------ESSCCHHHHHHHHHTBCTTTCEEEECCC
T ss_pred hhhcCCCcEEE------EecccchHHHHHHHHhhcCCeEEEecCC
Confidence 01124678876 3334556677777777754456666654
|
| >d1hxha_ c.2.1.2 (A:) 3beta/17beta hydroxysteroid dehydrogenase {Comamonas testosteroni [TaxId: 285]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: 3beta/17beta hydroxysteroid dehydrogenase species: Comamonas testosteroni [TaxId: 285]
Probab=90.66 E-value=0.46 Score=37.23 Aligned_cols=79 Identities=9% Similarity=0.015 Sum_probs=49.5
Q ss_pred CCCCCeEEEecCCCC---HHHHHHHHhCCEEEEEcCCCcHHHHHHHHHHHHHcCCceEEEEeecCCCCc--CcC------
Q 026274 68 RFSGANVVELGAGTS---LPGLVAAKVGSNVTLTDDSNRIEVLKNMRRVCEMNKLNCRVMGLTWGFLDA--SIF------ 136 (241)
Q Consensus 68 ~~~~~~VLElGcGtG---l~sl~la~~g~~V~~tD~~~~~~~l~~~~~n~~~n~~~~~~~~l~w~~~~~--~~~------ 136 (241)
.++||.+|=-|++.| .++..+++.|++|+++|.++ +.++.+.+.+ +.+..+...|..+... ...
T Consensus 3 rL~gK~alITGas~GIG~aia~~la~~Ga~V~~~~~~~--~~~~~~~~~~---~~~~~~~~~Dv~~~~~~~~~~~~~~~~ 77 (253)
T d1hxha_ 3 RLQGKVALVTGGASGVGLEVVKLLLGEGAKVAFSDINE--AAGQQLAAEL---GERSMFVRHDVSSEADWTLVMAAVQRR 77 (253)
T ss_dssp TTTTCEEEETTTTSHHHHHHHHHHHHTTCEEEEECSCH--HHHHHHHHHH---CTTEEEECCCTTCHHHHHHHHHHHHHH
T ss_pred CCCCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCH--HHHHHHHHHh---CCCeEEEEeecCCHHHHHHHHHHHHHH
Confidence 468999999998877 34555666799999999985 4555544433 3344444455443221 000
Q ss_pred CCCCcEEEEcCCcCC
Q 026274 137 DLNPNIILGADVFYD 151 (241)
Q Consensus 137 ~~~fDlIl~~dvly~ 151 (241)
-.+.|+++.+--+..
T Consensus 78 ~g~iDilVnnAG~~~ 92 (253)
T d1hxha_ 78 LGTLNVLVNNAGILL 92 (253)
T ss_dssp HCSCCEEEECCCCCC
T ss_pred hCCCCeEEecccccC
Confidence 137898887765544
|
| >d1p77a1 c.2.1.7 (A:102-272) Shikimate 5-dehydrogenase AroE {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Aminoacid dehydrogenase-like, C-terminal domain domain: Shikimate 5-dehydrogenase AroE species: Haemophilus influenzae [TaxId: 727]
Probab=90.47 E-value=0.62 Score=34.20 Aligned_cols=121 Identities=12% Similarity=0.102 Sum_probs=62.6
Q ss_pred HHhccCCCCCCeEEEecCCCCHH--HHHHHHhCCEEEEEcCCCcHHHHHHHHHHHHHcCCceEEEEeecCCCCcCcCCCC
Q 026274 62 VWQQRYRFSGANVVELGAGTSLP--GLVAAKVGSNVTLTDDSNRIEVLKNMRRVCEMNKLNCRVMGLTWGFLDASIFDLN 139 (241)
Q Consensus 62 l~~~~~~~~~~~VLElGcGtGl~--sl~la~~g~~V~~tD~~~~~~~l~~~~~n~~~n~~~~~~~~l~w~~~~~~~~~~~ 139 (241)
|.......++++||=||||-..- ...+.+.+.+|+....+. +-.+.+.++..... .+....|.+. ....
T Consensus 9 l~~~~~~~~~k~vlIlGaGGaarai~~aL~~~~~~i~I~nR~~--~~a~~l~~~~~~~~---~~~~~~~~~~----~~~~ 79 (171)
T d1p77a1 9 LQRLNWLRPNQHVLILGAGGATKGVLLPLLQAQQNIVLANRTF--SKTKELAERFQPYG---NIQAVSMDSI----PLQT 79 (171)
T ss_dssp HHHTTCCCTTCEEEEECCSHHHHTTHHHHHHTTCEEEEEESSH--HHHHHHHHHHGGGS---CEEEEEGGGC----CCSC
T ss_pred HHHcCCCCCCCEEEEECCcHHHHHHHHHHcccCceeeeccchH--HHHHHHHHHHhhcc---ccchhhhccc----cccc
Confidence 44334456899999999993322 222344456899999984 44555555444222 3344555432 2247
Q ss_pred CcEEEEcCCcCCCccHHHHHHHHHHHhhcCCCeEEEEEee-ccCchhHHHHHHHHcCCE
Q 026274 140 PNIILGADVFYDASAFDDLFATITYLLQSSPGSVFITTYH-NRSGHHLIEFLMVKWGLK 197 (241)
Q Consensus 140 fDlIl~~dvly~~~~~~~ll~~~~~lL~~~~~~~~~~~~~-~r~~~~~~~~~~~~~g~~ 197 (241)
+|+|+.+-.+-......+. ....+++ +..++-+.|. ++.+ .+...+++.|..
T Consensus 80 ~diiIN~tp~g~~~~~~~~---~~~~~~~-~~~~~D~vy~~p~~T--~~l~~A~~~g~~ 132 (171)
T d1p77a1 80 YDLVINATSAGLSGGTASV---DAEILKL-GSAFYDMQYAKGTDT--PFIALCKSLGLT 132 (171)
T ss_dssp CSEEEECCCC-------CC---CHHHHHH-CSCEEESCCCTTSCC--HHHHHHHHTTCC
T ss_pred cceeeecccccccccccch---hhhhhcc-cceeeeeeccCcccH--HHHHHHHHcCCC
Confidence 9999988666433222221 1123332 3444445553 3333 234455667753
|
| >d1w6ua_ c.2.1.2 (A:) 2,4-dienoyl-CoA reductase, mitochondrial (DECR) {Human (Homo sapiens), [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: 2,4-dienoyl-CoA reductase, mitochondrial (DECR) species: Human (Homo sapiens), [TaxId: 9606]
Probab=90.14 E-value=0.46 Score=37.76 Aligned_cols=82 Identities=16% Similarity=0.164 Sum_probs=53.1
Q ss_pred CCCCCeEEEecCCCC---HHHHHHHHhCCEEEEEcCCCcHHHHHHH-HHHHHHcCCceEEEEeecCCCCcC--------c
Q 026274 68 RFSGANVVELGAGTS---LPGLVAAKVGSNVTLTDDSNRIEVLKNM-RRVCEMNKLNCRVMGLTWGFLDAS--------I 135 (241)
Q Consensus 68 ~~~~~~VLElGcGtG---l~sl~la~~g~~V~~tD~~~~~~~l~~~-~~n~~~n~~~~~~~~l~w~~~~~~--------~ 135 (241)
.++||++|=-|++.| .++..+++.|++|+++|.++ +-++.+ ++-....+..+.+...|..+...- .
T Consensus 22 ~l~gK~alITGas~GIG~aiA~~la~~Ga~Vii~~r~~--~~l~~~~~~l~~~~g~~~~~~~~D~~~~~~v~~~~~~~~~ 99 (294)
T d1w6ua_ 22 SFQGKVAFITGGGTGLGKGMTTLLSSLGAQCVIASRKM--DVLKATAEQISSQTGNKVHAIQCDVRDPDMVQNTVSELIK 99 (294)
T ss_dssp TTTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCH--HHHHHHHHHHHHHHSSCEEEEECCTTCHHHHHHHHHHHHH
T ss_pred CCCCCEEEEeCCCCHHHHHHHHHHHHcCCEEEEEECCH--HHHHHHHHHHHHhcCCceEEEEecccChHHHHHHhhhhhh
Confidence 578999999999877 34455666799999999996 344433 333445566666666666543210 0
Q ss_pred CCCCCcEEEEcCCcCC
Q 026274 136 FDLNPNIILGADVFYD 151 (241)
Q Consensus 136 ~~~~fDlIl~~dvly~ 151 (241)
.....|+++.+--...
T Consensus 100 ~~g~iDilvnnAg~~~ 115 (294)
T d1w6ua_ 100 VAGHPNIVINNAAGNF 115 (294)
T ss_dssp HTCSCSEEEECCCCCC
T ss_pred hccccchhhhhhhhcc
Confidence 1247898887654433
|
| >d1o9ga_ c.66.1.29 (A:) rRNA methyltransferase AviRa {Streptomyces viridochromogenes [TaxId: 1938]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: rRNA methyltransferase AviRa domain: rRNA methyltransferase AviRa species: Streptomyces viridochromogenes [TaxId: 1938]
Probab=90.07 E-value=0.67 Score=36.49 Aligned_cols=122 Identities=11% Similarity=0.020 Sum_probs=72.1
Q ss_pred cHHHHHHHHHhccCCCCCCeEEEecCCCCHHHHHHHHhCC----------------------------------------
Q 026274 54 CSVILAEYVWQQRYRFSGANVVELGAGTSLPGLVAAKVGS---------------------------------------- 93 (241)
Q Consensus 54 ~s~~L~~~l~~~~~~~~~~~VLElGcGtGl~sl~la~~g~---------------------------------------- 93 (241)
++-+|+.-+.... -..+..++|-=||+|.+.+.+|....
T Consensus 35 aa~il~~al~l~~-w~~~~~LlDPmCGSGTilIEAAlia~niaPGl~R~f~fe~w~~~~~~~w~~l~~~a~~~~~~~~~~ 113 (249)
T d1o9ga_ 35 ATEIFQRALARLP-GDGPVTLWDPCCGSGYLLTVLGLLHRRSLRQVIASDVDPAPLELAAKNLALLSPAGLTARELERRE 113 (249)
T ss_dssp HHHHHHHHHHTSS-CCSCEEEEETTCTTSHHHHHHHHHTGGGEEEEEEEESCHHHHHHHHHHHHTTSHHHHHHHHHHHHH
T ss_pred HHHHHHHHhhhhc-CCCCCceeccccCccHHHHHHHHHHhCcCcCcccchhhhcccccCHHHHHHHHHHHHHHHhccccc
Confidence 4555555543222 12344699999999999888877521
Q ss_pred --EEEEEcCCCcHHHHHHH---HHHHHHcCCc--eEEEEeecCCCCcC---cCCCCCcEEEEcCCcCCC---------cc
Q 026274 94 --NVTLTDDSNRIEVLKNM---RRVCEMNKLN--CRVMGLTWGFLDAS---IFDLNPNIILGADVFYDA---------SA 154 (241)
Q Consensus 94 --~V~~tD~~~~~~~l~~~---~~n~~~n~~~--~~~~~l~w~~~~~~---~~~~~fDlIl~~dvly~~---------~~ 154 (241)
.+++.|+++ ++++.+ +.|+...++. +.+...|+.+.... .....+++||++.+.=.. ..
T Consensus 114 ~~~i~G~D~d~--~ai~~A~~~r~n~~~Agl~~~i~i~~~d~f~~~~~~~~~~~~~~GlIVtNPPYGERl~~~~~~~~~~ 191 (249)
T d1o9ga_ 114 QSERFGKPSYL--EAAQAARRLRERLTAEGGALPCAIRTADVFDPRALSAVLAGSAPDVVLTDLPYGERTHWEGQVPGQP 191 (249)
T ss_dssp HHHHHCCHHHH--HHHHHHHHHHHHHHHTTSSCCEEEEECCTTCGGGHHHHHTTCCCSEEEEECCGGGSSSSSSCCCHHH
T ss_pred cCCccccccCH--HHHHHHHHHHHHHHHcCCCceeeeeecchhccCcchhccCCCCCCEEEeCCCccccccccccchHHH
Confidence 245666663 466665 4577666653 55666655432210 112467899998877442 13
Q ss_pred HHHHHHHHHHHhhcCCCeEEEEEeec
Q 026274 155 FDDLFATITYLLQSSPGSVFITTYHN 180 (241)
Q Consensus 155 ~~~ll~~~~~lL~~~~~~~~~~~~~~ 180 (241)
+..+...+.+.+. +..+++++...
T Consensus 192 ~~~~~~~l~~~~p--~~s~~~it~~~ 215 (249)
T d1o9ga_ 192 VAGLLRSLASALP--AHAVIAVTDRS 215 (249)
T ss_dssp HHHHHHHHHHHSC--TTCEEEEEESS
T ss_pred HHHHHHHHHccCC--CCcEEEEeCch
Confidence 5666667777773 45566665443
|
| >d1g55a_ c.66.1.26 (A:) DNMT2 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: C5 cytosine-specific DNA methylase, DCM domain: DNMT2 species: Human (Homo sapiens) [TaxId: 9606]
Probab=90.04 E-value=0.2 Score=40.55 Aligned_cols=123 Identities=13% Similarity=0.056 Sum_probs=66.4
Q ss_pred CeEEEecCCCCHHHHHHHHhCC--E-EEEEcCCCcHHHHHHHHHHHHHcCCceEEEEeecCCCCcC-cCCCCCcEEEEcC
Q 026274 72 ANVVELGAGTSLPGLVAAKVGS--N-VTLTDDSNRIEVLKNMRRVCEMNKLNCRVMGLTWGFLDAS-IFDLNPNIILGAD 147 (241)
Q Consensus 72 ~~VLElGcGtGl~sl~la~~g~--~-V~~tD~~~~~~~l~~~~~n~~~n~~~~~~~~l~w~~~~~~-~~~~~fDlIl~~d 147 (241)
.+|+||-||.|-+++.+.+.|. + |.++|+++ .+++..+.|. ....+...|..+.... .....+|+++++.
T Consensus 3 ~kv~~lF~G~Gg~~~gl~~aG~~~~~~~a~E~~~--~a~~~~~~n~----~~~~~~~~di~~~~~~~~~~~~~Dll~ggp 76 (343)
T d1g55a_ 3 LRVLELYSGVGGMHHALRESCIPAQVVAAIDVNT--VANEVYKYNF----PHTQLLAKTIEGITLEEFDRLSFDMILMSP 76 (343)
T ss_dssp EEEEEETCTTCHHHHHHHHHTCSEEEEEEECCCH--HHHHHHHHHC----TTSCEECSCGGGCCHHHHHHHCCSEEEECC
T ss_pred CEEEEcCcCccHHHHHHHHcCCCCeEEEEEECCH--HHHHHHHHHC----CCCCcccCchhhCCHhHcCCCCccEEEeec
Confidence 4799999999999988888886 3 67899995 5666666653 2222222222222111 1112689999887
Q ss_pred CcCCCc----------cHHHHHHHHHHHhhc---CCCeEEEEEeeccC----chhHHHHHHHHcCCEEEEE
Q 026274 148 VFYDAS----------AFDDLFATITYLLQS---SPGSVFITTYHNRS----GHHLIEFLMVKWGLKCVKL 201 (241)
Q Consensus 148 vly~~~----------~~~~ll~~~~~lL~~---~~~~~~~~~~~~r~----~~~~~~~~~~~~g~~~~~i 201 (241)
+.-... ....|+-.+.++++. .|. +|++.--..- ....+...+++.|+.+...
T Consensus 77 PCq~fS~ag~~~~~~d~r~~l~~~~~~~i~~~~~kPk-~~i~ENV~~l~~~~~~~~i~~~l~~~GY~v~~~ 146 (343)
T d1g55a_ 77 PCQPFTRIGRQGDMTDSRTNSFLHILDILPRLQKLPK-YILLENVKGFEVSSTRDLLIQTIENCGFQYQEF 146 (343)
T ss_dssp C------------------CHHHHHHHHGGGCSSCCS-EEEEEEETTGGGSHHHHHHHHHHHHTTEEEEEE
T ss_pred ccccccccccccccccccccccchhhhhHhhhcCCCc-eeeeeccCCcccchhhHHHHhhhhcccccccee
Confidence 753321 122354445555432 254 4454432211 1223333467889988664
|
| >d1gz6a_ c.2.1.2 (A:) (3R)-hydroxyacyl-CoA dehydrogenase domain of estradiol 17 beta-Dehydrogenase 4 {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: (3R)-hydroxyacyl-CoA dehydrogenase domain of estradiol 17 beta-Dehydrogenase 4 species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=89.91 E-value=0.57 Score=37.74 Aligned_cols=84 Identities=15% Similarity=0.139 Sum_probs=51.2
Q ss_pred cCCCCCCeEEEecCCCC---HHHHHHHHhCCEEEEEcCCCc-------HHHHHHHHHHHHHcCCceEEEEeecCCCCc--
Q 026274 66 RYRFSGANVVELGAGTS---LPGLVAAKVGSNVTLTDDSNR-------IEVLKNMRRVCEMNKLNCRVMGLTWGFLDA-- 133 (241)
Q Consensus 66 ~~~~~~~~VLElGcGtG---l~sl~la~~g~~V~~tD~~~~-------~~~l~~~~~n~~~n~~~~~~~~l~w~~~~~-- 133 (241)
|-.++||.+|=-|++.| .++..+++.|++|+++|.+.. .+.++.+.+.+...+... ..+..+...
T Consensus 2 Pm~l~gKvalITGas~GIG~aiA~~la~~Ga~Vvi~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~d~~~~~~~~ 78 (302)
T d1gz6a_ 2 PLRFDGRVVLVTGAGGGLGRAYALAFAERGALVVVNDLGGDFKGVGKGSSAADKVVEEIRRRGGKA---VANYDSVEAGE 78 (302)
T ss_dssp CCCCTTCEEEETTTTSHHHHHHHHHHHHTTCEEEEECCCBCTTSCBCCSHHHHHHHHHHHHTTCEE---EEECCCGGGHH
T ss_pred CcCcCCCEEEEeCCCCHHHHHHHHHHHHcCCEEEEEeCCchhhhhhhhHHHHHHHHHHHhhccccc---ccccchHHHHH
Confidence 34578999999999988 346667778999999997531 134444444454444433 233333211
Q ss_pred Cc------CCCCCcEEEEcCCcCCC
Q 026274 134 SI------FDLNPNIILGADVFYDA 152 (241)
Q Consensus 134 ~~------~~~~fDlIl~~dvly~~ 152 (241)
.. .-++.|+++.+--++..
T Consensus 79 ~~v~~~~~~~G~iDiLVnNAGi~~~ 103 (302)
T d1gz6a_ 79 KLVKTALDTFGRIDVVVNNAGILRD 103 (302)
T ss_dssp HHHHHHHHHTSCCCEEEECCCCCCC
T ss_pred HHHHHHHHHcCCCCEEEECCccCCC
Confidence 00 01378999977655543
|
| >d1xhla_ c.2.1.2 (A:) Hypothetical protein F25D1.5 {Caenorhabditis elegans [TaxId: 6239]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Hypothetical protein F25D1.5 species: Caenorhabditis elegans [TaxId: 6239]
Probab=89.84 E-value=0.56 Score=37.09 Aligned_cols=77 Identities=18% Similarity=0.252 Sum_probs=53.9
Q ss_pred CCCCeEEEecCCCCH---HHHHHHHhCCEEEEEcCCCcHHHHHHHHHHHHHcCC---ceEEEEeecCCCCc--CcC----
Q 026274 69 FSGANVVELGAGTSL---PGLVAAKVGSNVTLTDDSNRIEVLKNMRRVCEMNKL---NCRVMGLTWGFLDA--SIF---- 136 (241)
Q Consensus 69 ~~~~~VLElGcGtGl---~sl~la~~g~~V~~tD~~~~~~~l~~~~~n~~~n~~---~~~~~~l~w~~~~~--~~~---- 136 (241)
++||++|=-|++.|+ ++..+++.|++|+++|.++ +-++.+.+.+...+. ++.+...|..+... ...
T Consensus 2 L~gK~alITGas~GIG~aia~~la~~Ga~V~~~~r~~--~~l~~~~~~i~~~~~~~~~~~~~~~Dv~~~~~v~~~~~~~~ 79 (274)
T d1xhla_ 2 FSGKSVIITGSSNGIGRSAAVIFAKEGAQVTITGRNE--DRLEETKQQILKAGVPAEKINAVVADVTEASGQDDIINTTL 79 (274)
T ss_dssp CTTCEEEETTCSSHHHHHHHHHHHHTTCEEEEEESCH--HHHHHHHHHHHHTTCCGGGEEEEECCTTSHHHHHHHHHHHH
T ss_pred CCCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEECCH--HHHHHHHHHHHHcCCCCcceEEEEeeCCCHHHHHHHHHHHH
Confidence 679999999999884 4556677799999999995 577777777766553 45666777665431 000
Q ss_pred --CCCCcEEEEcC
Q 026274 137 --DLNPNIILGAD 147 (241)
Q Consensus 137 --~~~fDlIl~~d 147 (241)
-++.|+++.+-
T Consensus 80 ~~~G~iDilVnnA 92 (274)
T d1xhla_ 80 AKFGKIDILVNNA 92 (274)
T ss_dssp HHHSCCCEEEECC
T ss_pred HHcCCceEEEeec
Confidence 13789998764
|
| >d1p0fa2 c.2.1.1 (A:1164-1337) Alcohol dehydrogenase {Frog (Rana perezi) [TaxId: 8403]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Alcohol dehydrogenase species: Frog (Rana perezi) [TaxId: 8403]
Probab=89.83 E-value=0.39 Score=35.35 Aligned_cols=104 Identities=7% Similarity=-0.004 Sum_probs=57.7
Q ss_pred hccCCCCCCeEEEecCC-CCHHHHHHHH-hCC-EEEEEcCCCcHHHHHHHHHHHHHcCCceEEEEeecCCCC-----cCc
Q 026274 64 QQRYRFSGANVVELGAG-TSLPGLVAAK-VGS-NVTLTDDSNRIEVLKNMRRVCEMNKLNCRVMGLTWGFLD-----ASI 135 (241)
Q Consensus 64 ~~~~~~~~~~VLElGcG-tGl~sl~la~-~g~-~V~~tD~~~~~~~l~~~~~n~~~n~~~~~~~~l~w~~~~-----~~~ 135 (241)
+.....+|.+||=+||| .|+.++.+++ .|+ +|+++|.++. -++.+++ .+.... ....-.+.. ...
T Consensus 21 ~~a~~~~G~~VlV~GaGgvGl~a~~~ak~~G~~~Vi~~d~~~~--kl~~a~~----lGa~~~-i~~~~~d~~~~~~~~~~ 93 (174)
T d1p0fa2 21 NTAKVTPGSTCAVFGLGGVGFSAIVGCKAAGASRIIGVGTHKD--KFPKAIE----LGATEC-LNPKDYDKPIYEVICEK 93 (174)
T ss_dssp TTTCCCTTCEEEEECCSHHHHHHHHHHHHHTCSEEEEECSCGG--GHHHHHH----TTCSEE-ECGGGCSSCHHHHHHHH
T ss_pred HhhCCCCCCEEEEECCCchhHHHHHHHHHcCCceeeccCChHH--HHHHHHH----cCCcEE-EcCCCchhHHHHHHHHh
Confidence 44456788999999998 5577777776 576 8999999963 5555543 343322 111111110 011
Q ss_pred CCCCCcEEEEcCCcCCCccHHHHHHHHHHHhhcCCCeEEEEEeec
Q 026274 136 FDLNPNIILGADVFYDASAFDDLFATITYLLQSSPGSVFITTYHN 180 (241)
Q Consensus 136 ~~~~fDlIl~~dvly~~~~~~~ll~~~~~lL~~~~~~~~~~~~~~ 180 (241)
....+|+++- .......+......+.++.|.++++....
T Consensus 94 ~~~G~d~vid------~~g~~~~~~~~~~~~~~~~G~~v~vG~~~ 132 (174)
T d1p0fa2 94 TNGGVDYAVE------CAGRIETMMNALQSTYCGSGVTVVLGLAS 132 (174)
T ss_dssp TTSCBSEEEE------CSCCHHHHHHHHHTBCTTTCEEEECCCCC
T ss_pred cCCCCcEEEE------cCCCchHHHHHHHHHHHhcCceEEEEEec
Confidence 1236888773 22233444444555543345566666543
|
| >d1xkqa_ c.2.1.2 (A:) Hypothetical protein R05D8.7 {Caenorhabditis elegans [TaxId: 6239]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Hypothetical protein R05D8.7 species: Caenorhabditis elegans [TaxId: 6239]
Probab=89.60 E-value=0.57 Score=36.94 Aligned_cols=79 Identities=22% Similarity=0.265 Sum_probs=54.5
Q ss_pred CCCCCeEEEecCCCC---HHHHHHHHhCCEEEEEcCCCcHHHHHHHHHHHHHcCC---ceEEEEeecCCCCc--CcC---
Q 026274 68 RFSGANVVELGAGTS---LPGLVAAKVGSNVTLTDDSNRIEVLKNMRRVCEMNKL---NCRVMGLTWGFLDA--SIF--- 136 (241)
Q Consensus 68 ~~~~~~VLElGcGtG---l~sl~la~~g~~V~~tD~~~~~~~l~~~~~n~~~n~~---~~~~~~l~w~~~~~--~~~--- 136 (241)
.++||++|=-|++.| .++..+++.|++|+++|.++ +-++.+.+.+...+. ++.+...|..+... ...
T Consensus 2 rL~gK~alVTGas~GIG~aia~~la~~Ga~V~l~~r~~--~~l~~~~~~l~~~~~~~~~~~~~~~Dvs~~~~v~~~~~~~ 79 (272)
T d1xkqa_ 2 RFSNKTVIITGSSNGIGRTTAILFAQEGANVTITGRSS--ERLEETRQIILKSGVSEKQVNSVVADVTTEDGQDQIINST 79 (272)
T ss_dssp TTTTCEEEETTCSSHHHHHHHHHHHHTTCEEEEEESCH--HHHHHHHHHHHTTTCCGGGEEEEECCTTSHHHHHHHHHHH
T ss_pred CCCCCEEEEeCcCcHHHHHHHHHHHHCCCEEEEEECCH--HHHHHHHHHHHhcCCCCCceEEEEccCCCHHHHHHHHHHH
Confidence 468999999999887 34566777799999999995 577777766665543 46667777665431 011
Q ss_pred ---CCCCcEEEEcCC
Q 026274 137 ---DLNPNIILGADV 148 (241)
Q Consensus 137 ---~~~fDlIl~~dv 148 (241)
-++.|+++.+--
T Consensus 80 ~~~~g~iDilvnnAG 94 (272)
T d1xkqa_ 80 LKQFGKIDVLVNNAG 94 (272)
T ss_dssp HHHHSCCCEEEECCC
T ss_pred HHHhCCceEEEeCCc
Confidence 137899987643
|
| >d1uufa2 c.2.1.1 (A:145-312) Hypothetical protein YahK {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Hypothetical protein YahK species: Escherichia coli [TaxId: 562]
Probab=89.54 E-value=0.37 Score=35.07 Aligned_cols=38 Identities=24% Similarity=0.263 Sum_probs=29.1
Q ss_pred ccCCCCCCeEEEecCC-CCHHHHHHHH-hCCEEEEEcCCC
Q 026274 65 QRYRFSGANVVELGAG-TSLPGLVAAK-VGSNVTLTDDSN 102 (241)
Q Consensus 65 ~~~~~~~~~VLElGcG-tGl~sl~la~-~g~~V~~tD~~~ 102 (241)
.....+|.+||=+||| .|++.+.+++ .|++++++|.++
T Consensus 25 ~~~~~~G~~VlI~GaG~vG~~a~qlak~~Ga~~i~~~~~~ 64 (168)
T d1uufa2 25 HWQAGPGKKVGVVGIGGLGHMGIKLAHAMGAHVVAFTTSE 64 (168)
T ss_dssp HTTCCTTCEEEEECCSHHHHHHHHHHHHTTCEEEEEESSG
T ss_pred HhCCCCCCEEEEeccchHHHHHHHHhhcccccchhhccch
Confidence 3455678899999997 5666666666 488988999886
|
| >d1spxa_ c.2.1.2 (A:) Glucose dehydrogenase (5l265) {Nematode (Caenorhabditis elegans) [TaxId: 6239]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Glucose dehydrogenase (5l265) species: Nematode (Caenorhabditis elegans) [TaxId: 6239]
Probab=89.44 E-value=0.63 Score=36.48 Aligned_cols=78 Identities=18% Similarity=0.211 Sum_probs=53.4
Q ss_pred CCCCCeEEEecCCCCH---HHHHHHHhCCEEEEEcCCCcHHHHHHHHHHHHHcCC---ceEEEEeecCCCCc--CcC---
Q 026274 68 RFSGANVVELGAGTSL---PGLVAAKVGSNVTLTDDSNRIEVLKNMRRVCEMNKL---NCRVMGLTWGFLDA--SIF--- 136 (241)
Q Consensus 68 ~~~~~~VLElGcGtGl---~sl~la~~g~~V~~tD~~~~~~~l~~~~~n~~~n~~---~~~~~~l~w~~~~~--~~~--- 136 (241)
.++||.+|=-|++.|+ ++..+++.|++|+++|.++ +.++.+.+.+...+. ++.+...|..+... ...
T Consensus 2 rl~gKvalVTGas~GIG~aia~~la~~Ga~V~~~~r~~--~~l~~~~~~l~~~~~~~~~~~~~~~Dvt~~~~v~~~~~~~ 79 (264)
T d1spxa_ 2 RFAEKVAIITGSSNGIGRATAVLFAREGAKVTITGRHA--ERLEETRQQILAAGVSEQNVNSVVADVTTDAGQDEILSTT 79 (264)
T ss_dssp TTTTCEEEETTTTSHHHHHHHHHHHHTTCEEEEEESCH--HHHHHHHHHHHHTTCCGGGEEEEECCTTSHHHHHHHHHHH
T ss_pred CCCCCEEEEeCcCCHHHHHHHHHHHHCCCEEEEEECCH--HHHHHHHHHHHhcCCCcCceEEEEccCCCHHHHHHHHHHH
Confidence 3688999999998773 4556677799999999995 577777776665543 46666777654421 001
Q ss_pred ---CCCCcEEEEcC
Q 026274 137 ---DLNPNIILGAD 147 (241)
Q Consensus 137 ---~~~fDlIl~~d 147 (241)
-++.|+++.+-
T Consensus 80 ~~~~g~iDilvnnA 93 (264)
T d1spxa_ 80 LGKFGKLDILVNNA 93 (264)
T ss_dssp HHHHSCCCEEEECC
T ss_pred HHHhCCCCEeeccc
Confidence 13789888664
|
| >d2jfga1 c.5.1.1 (A:1-93) UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase MurD {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: MurCD N-terminal domain superfamily: MurCD N-terminal domain family: MurCD N-terminal domain domain: UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase MurD species: Escherichia coli [TaxId: 562]
Probab=89.32 E-value=0.13 Score=34.06 Aligned_cols=36 Identities=28% Similarity=0.298 Sum_probs=28.2
Q ss_pred CCCCCeEEEecCC-CCH-HHHHHHHhCCEEEEEcCCCc
Q 026274 68 RFSGANVVELGAG-TSL-PGLVAAKVGSNVTLTDDSNR 103 (241)
Q Consensus 68 ~~~~~~VLElGcG-tGl-~sl~la~~g~~V~~tD~~~~ 103 (241)
.+++++|+=+|.| ||+ +.-+|++.|++|+++|..+.
T Consensus 2 ~~~~K~v~ViGlG~sG~s~a~~L~~~g~~v~~~D~~~~ 39 (93)
T d2jfga1 2 DYQGKNVVIIGLGLTGLSCVDFFLARGVTPRVMDTRMT 39 (93)
T ss_dssp CCTTCCEEEECCSHHHHHHHHHHHHTTCCCEEEESSSS
T ss_pred CcCCCEEEEEeECHHHHHHHHHHHHCCCEEEEeeCCcC
Confidence 4688999999998 673 34556667999999999763
|
| >d2g5ca2 c.2.1.6 (A:30-200) Prephenate dehydrogenase TyrA {Aquifex aeolicus [TaxId: 63363]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: Prephenate dehydrogenase TyrA species: Aquifex aeolicus [TaxId: 63363]
Probab=89.23 E-value=1.4 Score=31.66 Aligned_cols=87 Identities=15% Similarity=0.207 Sum_probs=48.1
Q ss_pred eEEEecCCC-C-HHHHHHHHhCC--EEEEEcCCCcHHHHHHHHHHHHHcCCceEEEEeecCCCCcCcCCCCCcEEEEcCC
Q 026274 73 NVVELGAGT-S-LPGLVAAKVGS--NVTLTDDSNRIEVLKNMRRVCEMNKLNCRVMGLTWGFLDASIFDLNPNIILGADV 148 (241)
Q Consensus 73 ~VLElGcGt-G-l~sl~la~~g~--~V~~tD~~~~~~~l~~~~~n~~~n~~~~~~~~l~w~~~~~~~~~~~fDlIl~~dv 148 (241)
+|+=+|||. | -++..+.+.|. +|+++|.++ +.++.+++ .+...... .+. ........|+|+.+-.
T Consensus 3 ~I~IIG~G~mG~sla~~L~~~g~~~~I~~~D~~~--~~~~~a~~----~~~~~~~~----~~~-~~~~~~~~dlIila~p 71 (171)
T d2g5ca2 3 NVLIVGVGFMGGSFAKSLRRSGFKGKIYGYDINP--ESISKAVD----LGIIDEGT----TSI-AKVEDFSPDFVMLSSP 71 (171)
T ss_dssp EEEEESCSHHHHHHHHHHHHTTCCSEEEEECSCH--HHHHHHHH----TTSCSEEE----SCG-GGGGGTCCSEEEECSC
T ss_pred EEEEEccCHHHHHHHHHHHhcCCCeEEEEEECCh--HHHHHHHH----hhcchhhh----hhh-hhhhccccccccccCC
Confidence 577787751 2 33444445564 799999994 46655544 23321111 111 1112236899987654
Q ss_pred cCCCccHHHHHHHHHHHhhcCCCeEEE
Q 026274 149 FYDASAFDDLFATITYLLQSSPGSVFI 175 (241)
Q Consensus 149 ly~~~~~~~ll~~~~~lL~~~~~~~~~ 175 (241)
. .....+++.+...++ ++.+++
T Consensus 72 ~---~~~~~vl~~l~~~~~--~~~ii~ 93 (171)
T d2g5ca2 72 V---RTFREIAKKLSYILS--EDATVT 93 (171)
T ss_dssp H---HHHHHHHHHHHHHSC--TTCEEE
T ss_pred c---hhhhhhhhhhhcccc--cccccc
Confidence 3 356677777888775 455444
|
| >d2bgka1 c.2.1.2 (A:11-278) Rhizome secoisolariciresinol dehydrogenase {Mayapple (Podophyllum peltatum) [TaxId: 35933]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Rhizome secoisolariciresinol dehydrogenase species: Mayapple (Podophyllum peltatum) [TaxId: 35933]
Probab=89.10 E-value=0.57 Score=36.85 Aligned_cols=78 Identities=9% Similarity=0.091 Sum_probs=50.9
Q ss_pred CCCCCeEEEecCCCCH---HHHHHHHhCCEEEEEcCCCcHHHHHHHHHHHHHcCCceEEEEeecCCCCc--CcC------
Q 026274 68 RFSGANVVELGAGTSL---PGLVAAKVGSNVTLTDDSNRIEVLKNMRRVCEMNKLNCRVMGLTWGFLDA--SIF------ 136 (241)
Q Consensus 68 ~~~~~~VLElGcGtGl---~sl~la~~g~~V~~tD~~~~~~~l~~~~~n~~~n~~~~~~~~l~w~~~~~--~~~------ 136 (241)
.++||.+|=-|++.|+ ++..+++.|++|+++|.++ +-++.+.+.+...+ .+.+...|..+... ...
T Consensus 3 rL~gKvalITGas~GIG~aia~~la~~Ga~V~i~~r~~--~~~~~~~~~l~~~~-~~~~~~~Dv~~~~~v~~~~~~~~~~ 79 (268)
T d2bgka1 3 RLQDKVAIITGGAGGIGETTAKLFVRYGAKVVIADIAD--DHGQKVCNNIGSPD-VISFVHCDVTKDEDVRNLVDTTIAK 79 (268)
T ss_dssp TTTTCEEEEESTTSHHHHHHHHHHHHTTCEEEEEESCH--HHHHHHHHHHCCTT-TEEEEECCTTCHHHHHHHHHHHHHH
T ss_pred CCCCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEECCH--HHHHHHHHHhcCCC-ceEEEEccCCCHHHHHHHHHHHHHH
Confidence 4689999999998884 3445666799999999985 56666655554333 35556666654321 000
Q ss_pred CCCCcEEEEcCC
Q 026274 137 DLNPNIILGADV 148 (241)
Q Consensus 137 ~~~fDlIl~~dv 148 (241)
-.+.|+++.+--
T Consensus 80 ~g~iD~lVnnAG 91 (268)
T d2bgka1 80 HGKLDIMFGNVG 91 (268)
T ss_dssp HSCCCEEEECCC
T ss_pred cCCcceeccccc
Confidence 137899886543
|
| >d1iy8a_ c.2.1.2 (A:) Levodione reductase {Corynebacterium aquaticum [TaxId: 144185]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Levodione reductase species: Corynebacterium aquaticum [TaxId: 144185]
Probab=89.08 E-value=0.78 Score=35.90 Aligned_cols=79 Identities=15% Similarity=0.081 Sum_probs=53.8
Q ss_pred CCCCeEEEecCCCCH---HHHHHHHhCCEEEEEcCCCcHHHHHHHHHHHHHc--CCceEEEEeecCCCCc--CcC-----
Q 026274 69 FSGANVVELGAGTSL---PGLVAAKVGSNVTLTDDSNRIEVLKNMRRVCEMN--KLNCRVMGLTWGFLDA--SIF----- 136 (241)
Q Consensus 69 ~~~~~VLElGcGtGl---~sl~la~~g~~V~~tD~~~~~~~l~~~~~n~~~n--~~~~~~~~l~w~~~~~--~~~----- 136 (241)
++||.+|=-|++.|+ ++..+++.|++|+++|.++ +-++.+...+... +.++.+...|..+... ...
T Consensus 2 l~gK~alITGas~GIG~aia~~la~~Ga~V~i~~r~~--~~l~~~~~~~~~~~~~~~~~~~~~Dvt~~~~v~~~~~~~~~ 79 (258)
T d1iy8a_ 2 FTDRVVLITGGGSGLGRATAVRLAAEGAKLSLVDVSS--EGLEASKAAVLETAPDAEVLTTVADVSDEAQVEAYVTATTE 79 (258)
T ss_dssp CTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCH--HHHHHHHHHHHHHCTTCCEEEEECCTTSHHHHHHHHHHHHH
T ss_pred CCCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCH--HHHHHHHHHHHhhCCCCeEEEEeccCCCHHHHHHHHHHHHH
Confidence 678999999999884 5777788899999999995 5666665555443 3355566677665432 000
Q ss_pred -CCCCcEEEEcCCc
Q 026274 137 -DLNPNIILGADVF 149 (241)
Q Consensus 137 -~~~fDlIl~~dvl 149 (241)
-++.|+++.+--+
T Consensus 80 ~~G~iDiLVnnAG~ 93 (258)
T d1iy8a_ 80 RFGRIDGFFNNAGI 93 (258)
T ss_dssp HHSCCSEEEECCCC
T ss_pred HhCCCCEEEECCcc
Confidence 1378999876543
|
| >d2rhca1 c.2.1.2 (A:5-261) beta-keto acyl carrier protein reductase {Streptomyces coelicolor [TaxId: 1902]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: beta-keto acyl carrier protein reductase species: Streptomyces coelicolor [TaxId: 1902]
Probab=88.81 E-value=0.77 Score=35.81 Aligned_cols=78 Identities=9% Similarity=-0.010 Sum_probs=54.0
Q ss_pred CCeEEEecCCCCH---HHHHHHHhCCEEEEEcCCCcHHHHHHHHHHHHHcCCceEEEEeecCCCCc--CcC------CCC
Q 026274 71 GANVVELGAGTSL---PGLVAAKVGSNVTLTDDSNRIEVLKNMRRVCEMNKLNCRVMGLTWGFLDA--SIF------DLN 139 (241)
Q Consensus 71 ~~~VLElGcGtGl---~sl~la~~g~~V~~tD~~~~~~~l~~~~~n~~~n~~~~~~~~l~w~~~~~--~~~------~~~ 139 (241)
||.+|=-|++.|+ ++..+++.|++|+++|.++ +.++.+.+.+...+.++.+...|..+... ... -.+
T Consensus 2 gKValITGas~GIG~aia~~la~~Ga~V~i~~r~~--~~l~~~~~~l~~~g~~~~~~~~Dvs~~~~v~~~~~~~~~~~g~ 79 (257)
T d2rhca1 2 SEVALVTGATSGIGLEIARRLGKEGLRVFVCARGE--EGLRTTLKELREAGVEADGRTCDVRSVPEIEALVAAVVERYGP 79 (257)
T ss_dssp CCEEEEESCSSHHHHHHHHHHHHTTCEEEEEESCH--HHHHHHHHHHHHTTCCEEEEECCTTCHHHHHHHHHHHHHHTCS
T ss_pred CCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCH--HHHHHHHHHHHhcCCcEEEEEeecCCHHHHHHHHHHHHHHhCC
Confidence 5666888887774 4556677799999999985 67777777777777777777777765431 000 137
Q ss_pred CcEEEEcCCcC
Q 026274 140 PNIILGADVFY 150 (241)
Q Consensus 140 fDlIl~~dvly 150 (241)
.|+++.+--+.
T Consensus 80 iDilVnnAG~~ 90 (257)
T d2rhca1 80 VDVLVNNAGRP 90 (257)
T ss_dssp CSEEEECCCCC
T ss_pred CCEEEeccccc
Confidence 89988664443
|
| >d1yb5a2 c.2.1.1 (A:121-294) Quinone oxidoreductase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Quinone oxidoreductase species: Human (Homo sapiens) [TaxId: 9606]
Probab=88.68 E-value=0.49 Score=34.51 Aligned_cols=104 Identities=19% Similarity=0.144 Sum_probs=60.0
Q ss_pred cHHHHHHHHH-hccCCCCCCeEEEecC-C-CCHHHHHHHH-hCCEEEEEcCCCcHHHHHHHHHHHHHcCCceEEEEeecC
Q 026274 54 CSVILAEYVW-QQRYRFSGANVVELGA-G-TSLPGLVAAK-VGSNVTLTDDSNRIEVLKNMRRVCEMNKLNCRVMGLTWG 129 (241)
Q Consensus 54 ~s~~L~~~l~-~~~~~~~~~~VLElGc-G-tGl~sl~la~-~g~~V~~tD~~~~~~~l~~~~~n~~~n~~~~~~~~l~w~ 129 (241)
.+...+.+.. ......+|.+||=.|+ | .|+.++.+|+ .|++|++++.++ +-++.+++ .+... + ++-.
T Consensus 11 ~~~~TA~~al~~~~~~~~g~~VlV~Ga~G~vG~~aiq~a~~~G~~vi~~~~~~--~~~~~~~~----~Ga~~-v--i~~~ 81 (174)
T d1yb5a2 11 IPYFTAYRALIHSACVKAGESVLVHGASGGVGLAACQIARAYGLKILGTAGTE--EGQKIVLQ----NGAHE-V--FNHR 81 (174)
T ss_dssp HHHHHHHHHHHTTSCCCTTCEEEEETCSSHHHHHHHHHHHHTTCEEEEEESSH--HHHHHHHH----TTCSE-E--EETT
T ss_pred HHHHHHHHHHHHHhCCCCCCEEEEEeccccccccccccccccCcccccccccc--cccccccc----cCccc-c--cccc
Confidence 3444444443 3334557889999997 3 6677777777 489999999874 34444443 34432 2 2222
Q ss_pred CCC--c----CcCCCCCcEEEEcCCcCCCccHHHHHHHHHHHhhcCCCeEEE
Q 026274 130 FLD--A----SIFDLNPNIILGADVFYDASAFDDLFATITYLLQSSPGSVFI 175 (241)
Q Consensus 130 ~~~--~----~~~~~~fDlIl~~dvly~~~~~~~ll~~~~~lL~~~~~~~~~ 175 (241)
+.. + ......+|+|+-+ .-.+.++...+++++ +|.++
T Consensus 82 ~~~~~~~i~~~t~~~g~d~v~d~-------~g~~~~~~~~~~l~~--~G~iv 124 (174)
T d1yb5a2 82 EVNYIDKIKKYVGEKGIDIIIEM-------LANVNLSKDLSLLSH--GGRVI 124 (174)
T ss_dssp STTHHHHHHHHHCTTCEEEEEES-------CHHHHHHHHHHHEEE--EEEEE
T ss_pred cccHHHHhhhhhccCCceEEeec-------ccHHHHHHHHhccCC--CCEEE
Confidence 211 0 1123469998853 123567777788874 44433
|
| >d1pl8a2 c.2.1.1 (A:146-316) Ketose reductase (sorbitol dehydrogenase) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Ketose reductase (sorbitol dehydrogenase) species: Human (Homo sapiens) [TaxId: 9606]
Probab=88.68 E-value=0.53 Score=34.21 Aligned_cols=100 Identities=18% Similarity=0.235 Sum_probs=57.0
Q ss_pred CCCCCCeEEEecCC-CCHHHHHHHH-hCC-EEEEEcCCCcHHHHHHHHHHHHHcCCceEEEEeecCCCCc------CcCC
Q 026274 67 YRFSGANVVELGAG-TSLPGLVAAK-VGS-NVTLTDDSNRIEVLKNMRRVCEMNKLNCRVMGLTWGFLDA------SIFD 137 (241)
Q Consensus 67 ~~~~~~~VLElGcG-tGl~sl~la~-~g~-~V~~tD~~~~~~~l~~~~~n~~~n~~~~~~~~l~w~~~~~------~~~~ 137 (241)
...+|.+||=+||| .|+..+.+++ .|+ +|+++|.++ +-++.+++ .+.... ...+-.+..+ ....
T Consensus 23 ~~~~gd~VlI~G~G~iG~~~~~~a~~~G~~~Vi~~d~~~--~rl~~a~~----~Ga~~~-~~~~~~~~~~~~~~~~~~~g 95 (171)
T d1pl8a2 23 GVTLGHKVLVCGAGPIGMVTLLVAKAMGAAQVVVTDLSA--TRLSKAKE----IGADLV-LQISKESPQEIARKVEGQLG 95 (171)
T ss_dssp TCCTTCEEEEECCSHHHHHHHHHHHHTTCSEEEEEESCH--HHHHHHHH----TTCSEE-EECSSCCHHHHHHHHHHHHT
T ss_pred CCCCCCEEEEECCCccHHHHHHHHHHcCCceEEeccCCH--HHHHHHHH----hCCccc-ccccccccccccccccccCC
Confidence 45578899999998 5566666665 488 899999995 35554443 344321 1111111100 0122
Q ss_pred CCCcEEEEcCCcCCCccHHHHHHHHHHHhhcCCCeEEEEEeec
Q 026274 138 LNPNIILGADVFYDASAFDDLFATITYLLQSSPGSVFITTYHN 180 (241)
Q Consensus 138 ~~fDlIl~~dvly~~~~~~~ll~~~~~lL~~~~~~~~~~~~~~ 180 (241)
..+|+|+- ...-+..++...+++++ +|.+++++...
T Consensus 96 ~g~Dvvid------~~G~~~~~~~a~~~~~~-gG~iv~~G~~~ 131 (171)
T d1pl8a2 96 CKPEVTIE------CTGAEASIQAGIYATRS-GGTLVLVGLGS 131 (171)
T ss_dssp SCCSEEEE------CSCCHHHHHHHHHHSCT-TCEEEECSCCC
T ss_pred CCceEEEe------ccCCchhHHHHHHHhcC-CCEEEEEecCC
Confidence 46888874 22335567777788873 34455555443
|
| >d1xa0a2 c.2.1.1 (A:119-294) B. subtilis YhfP homologue {Bacillus stearothermophilus [TaxId: 1422]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: B. subtilis YhfP homologue species: Bacillus stearothermophilus [TaxId: 1422]
Probab=88.37 E-value=0.5 Score=35.08 Aligned_cols=99 Identities=9% Similarity=-0.056 Sum_probs=53.5
Q ss_pred hccCCCCCCeEEEecCCC--CHHHHHHHH-hCCEEEEEcCCCcHHHHHHHHHHHHHcCCceEEE-EeecCCCCcCcCCCC
Q 026274 64 QQRYRFSGANVVELGAGT--SLPGLVAAK-VGSNVTLTDDSNRIEVLKNMRRVCEMNKLNCRVM-GLTWGFLDASIFDLN 139 (241)
Q Consensus 64 ~~~~~~~~~~VLElGcGt--Gl~sl~la~-~g~~V~~tD~~~~~~~l~~~~~n~~~n~~~~~~~-~l~w~~~~~~~~~~~ 139 (241)
......+|.+||=-|++. |..++.+|+ .|++|++|--++. -.+.+++ .+....+. .-.|.+.........
T Consensus 25 ~~g~~~~g~~VLI~gaaGGVG~~aiQlak~~Ga~Viat~~s~~--k~~~~~~----lGa~~vi~~~~~~~~~~~~~~~~g 98 (176)
T d1xa0a2 25 EHGLTPERGPVLVTGATGGVGSLAVSMLAKRGYTVEASTGKAA--EHDYLRV----LGAKEVLAREDVMAERIRPLDKQR 98 (176)
T ss_dssp HTTCCGGGCCEEESSTTSHHHHHHHHHHHHTTCCEEEEESCTT--CHHHHHH----TTCSEEEECC---------CCSCC
T ss_pred HhCCCCCCCEEEEEeccchHHHHHHHHHHHcCCceEEecCchH--HHHHHHh----cccceeeecchhHHHHHHHhhccC
Confidence 334455688899999764 466777776 5899999998863 3343332 34332211 111222111223457
Q ss_pred CcEEEEcCCcCCCccHHHHHHHHHHHhhcCCCeEEEEE
Q 026274 140 PNIILGADVFYDASAFDDLFATITYLLQSSPGSVFITT 177 (241)
Q Consensus 140 fDlIl~~dvly~~~~~~~ll~~~~~lL~~~~~~~~~~~ 177 (241)
+|+|+= ++- ...+....++|+ ++|.++..
T Consensus 99 vD~vid--~vg-----g~~~~~~l~~l~--~~Griv~~ 127 (176)
T d1xa0a2 99 WAAAVD--PVG-----GRTLATVLSRMR--YGGAVAVS 127 (176)
T ss_dssp EEEEEE--CST-----TTTHHHHHHTEE--EEEEEEEC
T ss_pred cCEEEE--cCC-----chhHHHHHHHhC--CCceEEEe
Confidence 998883 222 234666667777 45555443
|
| >d1zk4a1 c.2.1.2 (A:1-251) R-specific alcohol dehydrogenase {Lactobacillus brevis [TaxId: 1580]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: R-specific alcohol dehydrogenase species: Lactobacillus brevis [TaxId: 1580]
Probab=87.95 E-value=0.62 Score=36.34 Aligned_cols=81 Identities=11% Similarity=0.068 Sum_probs=54.4
Q ss_pred CCCCCeEEEecCCCCH---HHHHHHHhCCEEEEEcCCCcHHHHHHHHHHHHHcCCceEEEEeecCCCCc--CcC------
Q 026274 68 RFSGANVVELGAGTSL---PGLVAAKVGSNVTLTDDSNRIEVLKNMRRVCEMNKLNCRVMGLTWGFLDA--SIF------ 136 (241)
Q Consensus 68 ~~~~~~VLElGcGtGl---~sl~la~~g~~V~~tD~~~~~~~l~~~~~n~~~n~~~~~~~~l~w~~~~~--~~~------ 136 (241)
.++||.+|=-|++.|+ ++..+++.|++|+++|.++ +.++.+.+.+.. +.++.+...|..+... ...
T Consensus 3 rL~gK~alVTGas~GIG~aia~~la~~Ga~V~~~~r~~--~~~~~~~~~~~~-~~~~~~~~~Dv~~~~~v~~~~~~~~~~ 79 (251)
T d1zk4a1 3 RLDGKVAIITGGTLGIGLAIATKFVEEGAKVMITGRHS--DVGEKAAKSVGT-PDQIQFFQHDSSDEDGWTKLFDATEKA 79 (251)
T ss_dssp TTTTCEEEETTTTSHHHHHHHHHHHHTTCEEEEEESCH--HHHHHHHHHHCC-TTTEEEEECCTTCHHHHHHHHHHHHHH
T ss_pred CCCCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCH--HHHHHHHHHhCC-CCcEEEEEccCCCHHHHHHHHHHHHHH
Confidence 3689999999988873 4556677799999999985 577766665543 3456666777665321 001
Q ss_pred CCCCcEEEEcCCcCC
Q 026274 137 DLNPNIILGADVFYD 151 (241)
Q Consensus 137 ~~~fDlIl~~dvly~ 151 (241)
-++.|+++.+--+..
T Consensus 80 ~G~iDiLVnnAg~~~ 94 (251)
T d1zk4a1 80 FGPVSTLVNNAGIAV 94 (251)
T ss_dssp HSSCCEEEECCCCCC
T ss_pred hCCceEEEecccccc
Confidence 137899887655443
|
| >d1edoa_ c.2.1.2 (A:) beta-keto acyl carrier protein reductase {Oil seed rape (Brassica napus) [TaxId: 3708]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: beta-keto acyl carrier protein reductase species: Oil seed rape (Brassica napus) [TaxId: 3708]
Probab=87.94 E-value=1.9 Score=33.27 Aligned_cols=78 Identities=13% Similarity=0.064 Sum_probs=51.4
Q ss_pred eEEEecCCCC---HHHHHHHHhCCEEEEEcCCCcHHHHHHHHHHHHHcCCceEEEEeecCCCCc--CcC------CCCCc
Q 026274 73 NVVELGAGTS---LPGLVAAKVGSNVTLTDDSNRIEVLKNMRRVCEMNKLNCRVMGLTWGFLDA--SIF------DLNPN 141 (241)
Q Consensus 73 ~VLElGcGtG---l~sl~la~~g~~V~~tD~~~~~~~l~~~~~n~~~n~~~~~~~~l~w~~~~~--~~~------~~~fD 141 (241)
.||=-|++.| .++..+++.|++|+++|... ++.++.+.+.++..+.++.+...|..+... ... -++.|
T Consensus 3 V~lITGas~GIG~a~a~~la~~Ga~V~i~~~~~-~~~~~~~~~~~~~~g~~~~~~~~Dv~~~~~v~~~~~~~~~~~g~iD 81 (244)
T d1edoa_ 3 VVVVTGASRGIGKAIALSLGKAGCKVLVNYARS-AKAAEEVSKQIEAYGGQAITFGGDVSKEADVEAMMKTAIDAWGTID 81 (244)
T ss_dssp EEEETTCSSHHHHHHHHHHHHTTCEEEEEESSC-HHHHHHHHHHHHHHTCEEEEEECCTTSHHHHHHHHHHHHHHSSCCS
T ss_pred EEEEeCCCcHHHHHHHHHHHHCCCEEEEEeCCC-HHHHHHHHHHHHHcCCcEEEEeCCCCCHHHHHHHHHHHHHHcCCCC
Confidence 3455676666 23444666699999998876 467777777777778787777777765431 000 14789
Q ss_pred EEEEcCCcCC
Q 026274 142 IILGADVFYD 151 (241)
Q Consensus 142 lIl~~dvly~ 151 (241)
+++.+--+..
T Consensus 82 iLVnnAg~~~ 91 (244)
T d1edoa_ 82 VVVNNAGITR 91 (244)
T ss_dssp EEEECCCCCC
T ss_pred cccccccccc
Confidence 9887655544
|
| >d1hdca_ c.2.1.2 (A:) 3-alpha,20-beta-hydroxysteroid dehydrogenase {Streptomyces hydrogenans [TaxId: 1905]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: 3-alpha,20-beta-hydroxysteroid dehydrogenase species: Streptomyces hydrogenans [TaxId: 1905]
Probab=87.64 E-value=0.54 Score=36.87 Aligned_cols=79 Identities=15% Similarity=0.068 Sum_probs=50.9
Q ss_pred CCCCCeEEEecCCCC---HHHHHHHHhCCEEEEEcCCCcHHHHHHHHHHHHHcCCceEEEEeecCCCCc--CcC------
Q 026274 68 RFSGANVVELGAGTS---LPGLVAAKVGSNVTLTDDSNRIEVLKNMRRVCEMNKLNCRVMGLTWGFLDA--SIF------ 136 (241)
Q Consensus 68 ~~~~~~VLElGcGtG---l~sl~la~~g~~V~~tD~~~~~~~l~~~~~n~~~n~~~~~~~~l~w~~~~~--~~~------ 136 (241)
.++||++|=-|++.| .++..+++.|++|+++|.++ +-++.+ ++.-+.++.+...|..+... ...
T Consensus 2 dL~gK~alVTGas~GIG~aia~~la~~Ga~V~~~~r~~--~~~~~~---~~~~~~~~~~~~~Dv~~~~~v~~~~~~~~~~ 76 (254)
T d1hdca_ 2 DLSGKTVIITGGARGLGAEAARQAVAAGARVVLADVLD--EEGAAT---ARELGDAARYQHLDVTIEEDWQRVVAYAREE 76 (254)
T ss_dssp CCCCSEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCH--HHHHHH---HHTTGGGEEEEECCTTCHHHHHHHHHHHHHH
T ss_pred CCCCCEEEEeCcCCHHHHHHHHHHHHCCCEEEEEECCH--HHHHHH---HHHhCCceEEEEcccCCHHHHHHHHHHHHHH
Confidence 468999999999988 34566777799999999995 333333 22234456667777665321 000
Q ss_pred CCCCcEEEEcCCcCC
Q 026274 137 DLNPNIILGADVFYD 151 (241)
Q Consensus 137 ~~~fDlIl~~dvly~ 151 (241)
-.+.|+++.+--+..
T Consensus 77 ~g~iDilVnnAg~~~ 91 (254)
T d1hdca_ 77 FGSVDGLVNNAGIST 91 (254)
T ss_dssp HSCCCEEEECCCCCC
T ss_pred cCCccEEEecCcccc
Confidence 137898887655444
|
| >d1yxma1 c.2.1.2 (A:7-303) Peroxisomal trans 2-enoyl CoA reductase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Peroxisomal trans 2-enoyl CoA reductase species: Human (Homo sapiens) [TaxId: 9606]
Probab=87.55 E-value=1.2 Score=35.65 Aligned_cols=84 Identities=14% Similarity=0.036 Sum_probs=54.2
Q ss_pred cCCCCCCeEEEecCCCCH---HHHHHHHhCCEEEEEcCCCcHHHHHHHHHHHHHc-----CCceEEEEeecCCCCc--Cc
Q 026274 66 RYRFSGANVVELGAGTSL---PGLVAAKVGSNVTLTDDSNRIEVLKNMRRVCEMN-----KLNCRVMGLTWGFLDA--SI 135 (241)
Q Consensus 66 ~~~~~~~~VLElGcGtGl---~sl~la~~g~~V~~tD~~~~~~~l~~~~~n~~~n-----~~~~~~~~l~w~~~~~--~~ 135 (241)
+..++||.+|=-|++.|+ ++..+++.|++|+++|.++ +-++.+.+.+..+ +.++.+...|..+... ..
T Consensus 7 ~g~L~gKvalITGas~GIG~aia~~la~~Ga~Vvi~~r~~--~~l~~~~~el~~~~~~~~~~~~~~~~~Dvs~~~~v~~~ 84 (297)
T d1yxma1 7 PGLLQGQVAIVTGGATGIGKAIVKELLELGSNVVIASRKL--ERLKSAADELQANLPPTKQARVIPIQCNIRNEEEVNNL 84 (297)
T ss_dssp TTTTTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCH--HHHHHHHHHHHHTSCTTCCCCEEEEECCTTCHHHHHHH
T ss_pred CCCCCCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCH--HHHHHHHHHHHhhhccccCceEEEEeccCCCHHHHHHH
Confidence 356799999999998883 3455666799999999995 4555555444432 3456666666655421 00
Q ss_pred C------CCCCcEEEEcCCcCC
Q 026274 136 F------DLNPNIILGADVFYD 151 (241)
Q Consensus 136 ~------~~~fDlIl~~dvly~ 151 (241)
. -++.|+++.+--+..
T Consensus 85 ~~~~~~~~G~iDiLVnnAg~~~ 106 (297)
T d1yxma1 85 VKSTLDTFGKINFLVNNGGGQF 106 (297)
T ss_dssp HHHHHHHHSCCCEEEECCCCCC
T ss_pred HHHHHHHhCCeEEEEeeccccc
Confidence 0 137899987654443
|
| >d1ulsa_ c.2.1.2 (A:) beta-keto acyl carrier protein reductase {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: beta-keto acyl carrier protein reductase species: Thermus thermophilus [TaxId: 274]
Probab=87.45 E-value=2.7 Score=32.24 Aligned_cols=75 Identities=12% Similarity=0.029 Sum_probs=47.7
Q ss_pred CCCCeEEEecCCCCH---HHHHHHHhCCEEEEEcCCCcHHHHHHHHHHHHHcCCceEEEEeecCCCCc--CcC------C
Q 026274 69 FSGANVVELGAGTSL---PGLVAAKVGSNVTLTDDSNRIEVLKNMRRVCEMNKLNCRVMGLTWGFLDA--SIF------D 137 (241)
Q Consensus 69 ~~~~~VLElGcGtGl---~sl~la~~g~~V~~tD~~~~~~~l~~~~~n~~~n~~~~~~~~l~w~~~~~--~~~------~ 137 (241)
++||.+|=-|++.|+ ++..+++.|++|+++|.++ +-++.+.+ .+...+...|..+... ... -
T Consensus 3 L~gK~~lITGas~GIG~aia~~l~~~G~~V~~~~r~~--~~l~~~~~-----~~~~~~~~~Dv~~~~~v~~~~~~~~~~~ 75 (242)
T d1ulsa_ 3 LKDKAVLITGAAHGIGRATLELFAKEGARLVACDIEE--GPLREAAE-----AVGAHPVVMDVADPASVERGFAEALAHL 75 (242)
T ss_dssp TTTCEEEEESTTSHHHHHHHHHHHHTTCEEEEEESCH--HHHHHHHH-----TTTCEEEECCTTCHHHHHHHHHHHHHHH
T ss_pred CCCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCH--HHHHHHHH-----HcCCeEEEEecCCHHHHHHHHHHHHHhc
Confidence 578999999998883 3455666799999999995 45544433 3344556666654321 000 0
Q ss_pred CCCcEEEEcCCcC
Q 026274 138 LNPNIILGADVFY 150 (241)
Q Consensus 138 ~~fDlIl~~dvly 150 (241)
++.|+++.+--+.
T Consensus 76 g~iDilVnnAG~~ 88 (242)
T d1ulsa_ 76 GRLDGVVHYAGIT 88 (242)
T ss_dssp SSCCEEEECCCCC
T ss_pred CCceEEEECCccc
Confidence 3789888664443
|
| >d2jhfa2 c.2.1.1 (A:164-339) Alcohol dehydrogenase {Horse (Equus caballus) [TaxId: 9796]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Alcohol dehydrogenase species: Horse (Equus caballus) [TaxId: 9796]
Probab=87.32 E-value=0.18 Score=37.17 Aligned_cols=109 Identities=12% Similarity=0.051 Sum_probs=57.9
Q ss_pred cHHHHHHHH-HhccCCCCCCeEEEecCCC-CHHHHHHHH-hCC-EEEEEcCCCcHHHHHHHHHHHHHcCCceEEEEeecC
Q 026274 54 CSVILAEYV-WQQRYRFSGANVVELGAGT-SLPGLVAAK-VGS-NVTLTDDSNRIEVLKNMRRVCEMNKLNCRVMGLTWG 129 (241)
Q Consensus 54 ~s~~L~~~l-~~~~~~~~~~~VLElGcGt-Gl~sl~la~-~g~-~V~~tD~~~~~~~l~~~~~n~~~n~~~~~~~~l~w~ 129 (241)
++...+... .......+|.+||=+|||. |...+.+++ .|+ +|+++|.++. -++.+++ .+.... .++.
T Consensus 11 ca~~Tay~al~~~~~vk~GdtVlV~GaGG~G~~~~~~~~~~g~~~Vi~~~~~~~--k~~~a~~----~Ga~~~---i~~~ 81 (176)
T d2jhfa2 11 CGFSTGYGSAVKVAKVTQGSTCAVFGLGGVGLSVIMGCKAAGAARIIGVDINKD--KFAKAKE----VGATEC---VNPQ 81 (176)
T ss_dssp THHHHHHHHHHTTTCCCTTCEEEEECCSHHHHHHHHHHHHTTCSEEEEECSCGG--GHHHHHH----TTCSEE---ECGG
T ss_pred cHHHHHHHHHHHhhCCCCCCEEEEECCCCcHHHHHHHHHHcCCceEEeecCcHH--HHHHHHH----hCCeeE---EecC
Confidence 444444433 3444566889999999973 344444444 454 9999999973 4444433 343321 2222
Q ss_pred CCCcC-------cCCCCCcEEEEcCCcCCCccHHHHHHHHHHHhhcCCCeEEEEE
Q 026274 130 FLDAS-------IFDLNPNIILGADVFYDASAFDDLFATITYLLQSSPGSVFITT 177 (241)
Q Consensus 130 ~~~~~-------~~~~~fDlIl~~dvly~~~~~~~ll~~~~~lL~~~~~~~~~~~ 177 (241)
+.... .....+|+|+- .......++....+++.+++.+++..
T Consensus 82 ~~~~~~~~~~~~~~~~G~D~vid------~~G~~~~~~~a~~~~~~~~g~~~~~~ 130 (176)
T d2jhfa2 82 DYKKPIQEVLTEMSNGGVDFSFE------VIGRLDTMVTALSCCQEAYGVSVIVG 130 (176)
T ss_dssp GCSSCHHHHHHHHTTSCBSEEEE------CSCCHHHHHHHHHHBCTTTCEEEECS
T ss_pred CchhHHHHHHHHHhcCCCCEEEe------cCCchhHHHHHHHHHhcCCcceEEec
Confidence 21111 12246888773 33444666666667764434444433
|
| >d2ew8a1 c.2.1.2 (A:3-249) (s)-1-phenylethanol dehydrogenase {Azoarcus sp. ebn1 [TaxId: 76114]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: (s)-1-phenylethanol dehydrogenase species: Azoarcus sp. ebn1 [TaxId: 76114]
Probab=87.23 E-value=1 Score=34.93 Aligned_cols=80 Identities=10% Similarity=-0.015 Sum_probs=52.9
Q ss_pred CCCCCeEEEecCCCC---HHHHHHHHhCCEEEEEcCCCcHHHHHHHHHHHHHcCCceEEEEeecCCCCc--CcC------
Q 026274 68 RFSGANVVELGAGTS---LPGLVAAKVGSNVTLTDDSNRIEVLKNMRRVCEMNKLNCRVMGLTWGFLDA--SIF------ 136 (241)
Q Consensus 68 ~~~~~~VLElGcGtG---l~sl~la~~g~~V~~tD~~~~~~~l~~~~~n~~~n~~~~~~~~l~w~~~~~--~~~------ 136 (241)
.++||.+|=-|++.| .++..+++.|++|+++|.++. +.+...++..+.++.+...|..+... ...
T Consensus 2 rL~gKvalVTGas~GIG~aia~~la~~Ga~V~~~~~~~~----~~~~~~~~~~g~~~~~~~~Dvs~~~~v~~~~~~~~~~ 77 (247)
T d2ew8a1 2 RLKDKLAVITGGANGIGRAIAERFAVEGADIAIADLVPA----PEAEAAIRNLGRRVLTVKCDVSQPGDVEAFGKQVIST 77 (247)
T ss_dssp TTTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESSCC----HHHHHHHHHTTCCEEEEECCTTCHHHHHHHHHHHHHH
T ss_pred CCCCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCch----HHHHHHHHHcCCcEEEEEeeCCCHHHHHHHHHHHHHH
Confidence 368899999998877 345667777999999999874 22333344556677777777765431 000
Q ss_pred CCCCcEEEEcCCcCC
Q 026274 137 DLNPNIILGADVFYD 151 (241)
Q Consensus 137 ~~~fDlIl~~dvly~ 151 (241)
-++.|+++.+--++.
T Consensus 78 ~G~iDilVnnAG~~~ 92 (247)
T d2ew8a1 78 FGRCDILVNNAGIYP 92 (247)
T ss_dssp HSCCCEEEECCCCCC
T ss_pred cCCCCEEEECCCCCC
Confidence 137899887655544
|
| >d1p3da1 c.5.1.1 (A:11-106) UDP-N-acetylmuramate-alanine ligase MurC {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: MurCD N-terminal domain superfamily: MurCD N-terminal domain family: MurCD N-terminal domain domain: UDP-N-acetylmuramate-alanine ligase MurC species: Haemophilus influenzae [TaxId: 727]
Probab=87.21 E-value=1 Score=29.79 Aligned_cols=71 Identities=10% Similarity=0.128 Sum_probs=43.9
Q ss_pred CCCCCeEEEecCC-CCHHH--HHHHHhCCEEEEEcCCCcHHHHHHHHHHHHHcCCceEEEEeecCCCCcCcCCCCCcEEE
Q 026274 68 RFSGANVVELGAG-TSLPG--LVAAKVGSNVTLTDDSNRIEVLKNMRRVCEMNKLNCRVMGLTWGFLDASIFDLNPNIIL 144 (241)
Q Consensus 68 ~~~~~~VLElGcG-tGl~s--l~la~~g~~V~~tD~~~~~~~l~~~~~n~~~n~~~~~~~~l~w~~~~~~~~~~~fDlIl 144 (241)
..+.++|.=+|.| +|+-+ .+|.+.|++|++.|...+ ...+.+ ..++..+. ..+.. ... ...|+|+
T Consensus 5 ~~~~~~ihfiGigG~GMs~LA~~L~~~G~~VsGSD~~~~-~~~~~L----~~~Gi~v~---~g~~~--~~i--~~~d~vV 72 (96)
T d1p3da1 5 MRRVQQIHFIGIGGAGMSGIAEILLNEGYQISGSDIADG-VVTQRL----AQAGAKIY---IGHAE--EHI--EGASVVV 72 (96)
T ss_dssp CTTCCEEEEETTTSTTHHHHHHHHHHHTCEEEEEESCCS-HHHHHH----HHTTCEEE---ESCCG--GGG--TTCSEEE
T ss_pred chhCCEEEEEEECHHHHHHHHHHHHhCCCEEEEEeCCCC-hhhhHH----HHCCCeEE---ECCcc--ccC--CCCCEEE
Confidence 3456788888855 88655 567778999999999875 233333 23565532 11111 111 3589998
Q ss_pred EcCCcC
Q 026274 145 GADVFY 150 (241)
Q Consensus 145 ~~dvly 150 (241)
.+..+-
T Consensus 73 ~S~AI~ 78 (96)
T d1p3da1 73 VSSAIK 78 (96)
T ss_dssp ECTTSC
T ss_pred ECCCcC
Confidence 887763
|
| >d1f0ya2 c.2.1.6 (A:12-203) Short chain L-3-hydroxyacyl CoA dehydrogenase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: Short chain L-3-hydroxyacyl CoA dehydrogenase species: Human (Homo sapiens) [TaxId: 9606]
Probab=86.84 E-value=0.54 Score=35.30 Aligned_cols=99 Identities=18% Similarity=0.275 Sum_probs=55.0
Q ss_pred CeEEEecCCC-C-HHHHHHHHhCCEEEEEcCCCcHHHHHHHHHHHHHc-------CCc---------e--EEEEeecCCC
Q 026274 72 ANVVELGAGT-S-LPGLVAAKVGSNVTLTDDSNRIEVLKNMRRVCEMN-------KLN---------C--RVMGLTWGFL 131 (241)
Q Consensus 72 ~~VLElGcGt-G-l~sl~la~~g~~V~~tD~~~~~~~l~~~~~n~~~n-------~~~---------~--~~~~l~w~~~ 131 (241)
++|-=||+|+ | -++..++..|.+|++.|.++ +.++.+++.++.+ +.. . ....+.+...
T Consensus 5 kkvaViGaG~mG~~iA~~~a~~G~~V~l~D~~~--~~l~~a~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~l~~i~~~~d 82 (192)
T d1f0ya2 5 KHVTVIGGGLMGAGIAQVAAATGHTVVLVDQTE--DILAKSKKGIEESLRKVAKKKFAENPKAGDEFVEKTLSTIATSTD 82 (192)
T ss_dssp CEEEEECCSHHHHHHHHHHHHTTCEEEEECSCH--HHHHHHHHHHHHHHHHHHHTTSSSCHHHHHHHHHHHHHTEEEESC
T ss_pred EEEEEECcCHHHHHHHHHHHhCCCcEEEEECCh--HHHHHHHhhHHHHHHHHHHhhhhccchhhHHHHHHHHhhccccch
Confidence 4677888872 2 34555667799999999995 6777666554422 110 0 0000111111
Q ss_pred CcCcCCCCCcEEEEcCCcCCCccHHHHHHHHHHHhhcCCCeEEEEE
Q 026274 132 DASIFDLNPNIILGADVFYDASAFDDLFATITYLLQSSPGSVFITT 177 (241)
Q Consensus 132 ~~~~~~~~fDlIl~~dvly~~~~~~~ll~~~~~lL~~~~~~~~~~~ 177 (241)
... .-...|+|+-+ +..+.+.-..+++.+.+.+. +++ ++.+
T Consensus 83 ~~~-a~~~ad~ViEa-v~E~l~~K~~v~~~l~~~~~--~~~-ilas 123 (192)
T d1f0ya2 83 AAS-VVHSTDLVVEA-IVENLKVKNELFKRLDKFAA--EHT-IFAS 123 (192)
T ss_dssp HHH-HTTSCSEEEEC-CCSCHHHHHHHHHHHTTTSC--TTC-EEEE
T ss_pred hHh-hhcccceehhh-cccchhHHHHHHHHHhhhcc--cCc-eeec
Confidence 001 11257888854 44555666777777777764 444 4444
|
| >d1e5qa1 c.2.1.3 (A:2-124,A:392-450) Saccharopine reductase {Rice blast fungus (Magnaporthe grisea) [TaxId: 148305]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain domain: Saccharopine reductase species: Rice blast fungus (Magnaporthe grisea) [TaxId: 148305]
Probab=86.42 E-value=0.42 Score=34.38 Aligned_cols=32 Identities=25% Similarity=0.241 Sum_probs=24.4
Q ss_pred CCeEEEecCC-CC-HHHHHHHHhCCEEEEEcCCC
Q 026274 71 GANVVELGAG-TS-LPGLVAAKVGSNVTLTDDSN 102 (241)
Q Consensus 71 ~~~VLElGcG-tG-l~sl~la~~g~~V~~tD~~~ 102 (241)
.++||=+|+| .| .++-.|++.|++|++.|.+.
T Consensus 2 ~K~IliiGaG~~G~~~a~~L~~~g~~V~v~dr~~ 35 (182)
T d1e5qa1 2 TKSVLMLGSGFVTRPTLDVLTDSGIKVTVACRTL 35 (182)
T ss_dssp CCEEEEECCSTTHHHHHHHHHTTTCEEEEEESCH
T ss_pred CCEEEEECCCHHHHHHHHHHHhCCCEEEEEECCh
Confidence 5788889986 45 34455666689999999995
|
| >d1gega_ c.2.1.2 (A:) meso-2,3-butanediol dehydrogenase {Klebsiella pneumoniae [TaxId: 573]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: meso-2,3-butanediol dehydrogenase species: Klebsiella pneumoniae [TaxId: 573]
Probab=86.40 E-value=1.2 Score=34.48 Aligned_cols=75 Identities=15% Similarity=0.064 Sum_probs=51.4
Q ss_pred EEEecCCCC---HHHHHHHHhCCEEEEEcCCCcHHHHHHHHHHHHHcCCceEEEEeecCCCCc--CcC------CCCCcE
Q 026274 74 VVELGAGTS---LPGLVAAKVGSNVTLTDDSNRIEVLKNMRRVCEMNKLNCRVMGLTWGFLDA--SIF------DLNPNI 142 (241)
Q Consensus 74 VLElGcGtG---l~sl~la~~g~~V~~tD~~~~~~~l~~~~~n~~~n~~~~~~~~l~w~~~~~--~~~------~~~fDl 142 (241)
+|=-|++.| .++..+++.|++|+++|.++ +-++.+.+.+...+.++.+...|..+... ... -++.|+
T Consensus 4 alITGas~GIG~aia~~la~~Ga~V~~~~r~~--~~l~~~~~~i~~~g~~~~~~~~Dv~~~~~v~~~~~~~~~~~g~iDi 81 (255)
T d1gega_ 4 ALVTGAGQGIGKAIALRLVKDGFAVAIADYND--ATAKAVASEINQAGGHAVAVKVDVSDRDQVFAAVEQARKTLGGFDV 81 (255)
T ss_dssp EEEETTTSHHHHHHHHHHHHTTCEEEEEESCH--HHHHHHHHHHHHTTCCEEEEECCTTSHHHHHHHHHHHHHHTTCCCE
T ss_pred EEEcCCccHHHHHHHHHHHHCCCEEEEEECCH--HHHHHHHHHHHhcCCcEEEEEeeCCCHHHHHHHHHHHHHHhCCccE
Confidence 466788776 34556677799999999995 57777777777777777777777765431 000 147899
Q ss_pred EEEcCCcC
Q 026274 143 ILGADVFY 150 (241)
Q Consensus 143 Il~~dvly 150 (241)
++.+--+.
T Consensus 82 lVnnAG~~ 89 (255)
T d1gega_ 82 IVNNAGVA 89 (255)
T ss_dssp EEECCCCC
T ss_pred EEeccccc
Confidence 88664443
|
| >d1nffa_ c.2.1.2 (A:) Putative oxidoreductase Rv2002 {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Putative oxidoreductase Rv2002 species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=86.23 E-value=0.76 Score=35.74 Aligned_cols=79 Identities=14% Similarity=0.077 Sum_probs=51.2
Q ss_pred CCCCCeEEEecCCCCH---HHHHHHHhCCEEEEEcCCCcHHHHHHHHHHHHHcCCceEEEEeecCCCCc--CcC------
Q 026274 68 RFSGANVVELGAGTSL---PGLVAAKVGSNVTLTDDSNRIEVLKNMRRVCEMNKLNCRVMGLTWGFLDA--SIF------ 136 (241)
Q Consensus 68 ~~~~~~VLElGcGtGl---~sl~la~~g~~V~~tD~~~~~~~l~~~~~n~~~n~~~~~~~~l~w~~~~~--~~~------ 136 (241)
.++||.+|=-|++.|+ ++..+++.|++|+++|.++ +-++.+.+.+ +.++.+...|..+... ...
T Consensus 3 ~L~gK~alITGas~GIG~aia~~la~~G~~V~~~~r~~--~~~~~~~~~~---~~~~~~~~~Dv~~~~~v~~~~~~~~~~ 77 (244)
T d1nffa_ 3 RLTGKVALVSGGARGMGASHVRAMVAEGAKVVFGDILD--EEGKAMAAEL---ADAARYVHLDVTQPAQWKAAVDTAVTA 77 (244)
T ss_dssp TTTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCH--HHHHHHHHHT---GGGEEEEECCTTCHHHHHHHHHHHHHH
T ss_pred ccCCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCH--HHHHHHHHHh---hCcceEEEeecCCHHHHHHHHHHHHHH
Confidence 4689999999999884 4556777799999999995 4555444433 3345556666654321 000
Q ss_pred CCCCcEEEEcCCcCC
Q 026274 137 DLNPNIILGADVFYD 151 (241)
Q Consensus 137 ~~~fDlIl~~dvly~ 151 (241)
-.+.|+++.+--+..
T Consensus 78 ~g~idilinnAG~~~ 92 (244)
T d1nffa_ 78 FGGLHVLVNNAGILN 92 (244)
T ss_dssp HSCCCEEEECCCCCC
T ss_pred hCCCeEEEECCcccC
Confidence 136899887655544
|
| >d2fzwa2 c.2.1.1 (A:163-338) Alcohol dehydrogenase {Human (Homo sapiens), different isozymes [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Alcohol dehydrogenase species: Human (Homo sapiens), different isozymes [TaxId: 9606]
Probab=86.12 E-value=0.83 Score=33.03 Aligned_cols=101 Identities=9% Similarity=0.034 Sum_probs=55.7
Q ss_pred cHHHHHHHHH-hccCCCCCCeEEEecCC-CCHHHHHHHH-hCC-EEEEEcCCCcHHHHHHHHHHHHHcCCceEEEEeecC
Q 026274 54 CSVILAEYVW-QQRYRFSGANVVELGAG-TSLPGLVAAK-VGS-NVTLTDDSNRIEVLKNMRRVCEMNKLNCRVMGLTWG 129 (241)
Q Consensus 54 ~s~~L~~~l~-~~~~~~~~~~VLElGcG-tGl~sl~la~-~g~-~V~~tD~~~~~~~l~~~~~n~~~n~~~~~~~~l~w~ 129 (241)
++...+.... +.....+|.+||=.||| .|..++.+++ .|+ .|+++|.++. -++.+++ .+.... .+..
T Consensus 11 ca~~Tay~al~~~~~~~~G~tVlI~GaGGvG~~aiq~ak~~G~~~vi~~~~~~~--k~~~ak~----lGa~~~---i~~~ 81 (176)
T d2fzwa2 11 CGISTGYGAAVNTAKLEPGSVCAVFGLGGVGLAVIMGCKVAGASRIIGVDINKD--KFARAKE----FGATEC---INPQ 81 (176)
T ss_dssp THHHHHHHHHHTTTCCCTTCEEEEECCSHHHHHHHHHHHHHTCSEEEEECSCGG--GHHHHHH----HTCSEE---ECGG
T ss_pred cHHHHHHHHHHHhhCCCCCCEEEEecchhHHHHHHHHHHHHhcCceEEEcccHH--HHHHHHH----hCCcEE---EeCC
Confidence 3333334333 33456688999999998 3455555555 475 7999999863 4444443 343321 1221
Q ss_pred CCCc-------CcCCCCCcEEEEcCCcCCCccHHHHHHHHHHHhhcC
Q 026274 130 FLDA-------SIFDLNPNIILGADVFYDASAFDDLFATITYLLQSS 169 (241)
Q Consensus 130 ~~~~-------~~~~~~fDlIl~~dvly~~~~~~~ll~~~~~lL~~~ 169 (241)
+... ......+|+|+- ..-...+++....+++++
T Consensus 82 ~~~~~~~~~~~~~~~~g~D~vid------~~G~~~~~~~~~~~~~~g 122 (176)
T d2fzwa2 82 DFSKPIQEVLIEMTDGGVDYSFE------CIGNVKVMRAALEACHKG 122 (176)
T ss_dssp GCSSCHHHHHHHHTTSCBSEEEE------CSCCHHHHHHHHHTBCTT
T ss_pred chhhHHHHHHHHHcCCCCcEeee------cCCCHHHHHHHHHhhcCC
Confidence 1111 111246888873 233446777777787643
|
| >d1f8fa2 c.2.1.1 (A:163-336) Benzyl alcohol dehydrogenase {Acinetobacter calcoaceticus [TaxId: 471]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Benzyl alcohol dehydrogenase species: Acinetobacter calcoaceticus [TaxId: 471]
Probab=86.08 E-value=1.3 Score=32.13 Aligned_cols=100 Identities=19% Similarity=0.104 Sum_probs=56.4
Q ss_pred HhccCCCCCCeEEEecCC-CCHHHHHHHH-hCC-EEEEEcCCCcHHHHHHHHHHHHHcCCceEEEEeecCCCCc---CcC
Q 026274 63 WQQRYRFSGANVVELGAG-TSLPGLVAAK-VGS-NVTLTDDSNRIEVLKNMRRVCEMNKLNCRVMGLTWGFLDA---SIF 136 (241)
Q Consensus 63 ~~~~~~~~~~~VLElGcG-tGl~sl~la~-~g~-~V~~tD~~~~~~~l~~~~~n~~~n~~~~~~~~l~w~~~~~---~~~ 136 (241)
.+.....+|.+||=+||| .|+.++.+++ .|+ .|+++|.++ +-++.+++ .+.. .+...+-.+..+ ...
T Consensus 21 ~~~~~~~~g~~VlI~G~G~iG~~~~~~ak~~g~~~v~~~~~~~--~k~~~a~~----~Ga~-~~i~~~~~~~~~~i~~~t 93 (174)
T d1f8fa2 21 INALKVTPASSFVTWGAGAVGLSALLAAKVCGASIIIAVDIVE--SRLELAKQ----LGAT-HVINSKTQDPVAAIKEIT 93 (174)
T ss_dssp HTTTCCCTTCEEEEESCSHHHHHHHHHHHHHTCSEEEEEESCH--HHHHHHHH----HTCS-EEEETTTSCHHHHHHHHT
T ss_pred HHhhCCCCCCEEEEeCCCHHHhhhhhcccccccceeeeeccHH--HHHHHHHH----cCCe-EEEeCCCcCHHHHHHHHc
Confidence 333455678899999998 4566666665 477 678889985 35555544 2332 222211111111 122
Q ss_pred CCCCcEEEEcCCcCCCccHHHHHHHHHHHhhcCCCeE-EEEE
Q 026274 137 DLNPNIILGADVFYDASAFDDLFATITYLLQSSPGSV-FITT 177 (241)
Q Consensus 137 ~~~fDlIl~~dvly~~~~~~~ll~~~~~lL~~~~~~~-~~~~ 177 (241)
++.+|+|+- .......++...++++ ++|. ++++
T Consensus 94 ~gg~D~vid------~~G~~~~~~~~~~~~~--~~G~i~~~G 127 (174)
T d1f8fa2 94 DGGVNFALE------STGSPEILKQGVDALG--ILGKIAVVG 127 (174)
T ss_dssp TSCEEEEEE------CSCCHHHHHHHHHTEE--EEEEEEECC
T ss_pred CCCCcEEEE------cCCcHHHHHHHHhccc--CceEEEEEe
Confidence 346888873 2334567777778887 4444 4444
|
| >d1k2wa_ c.2.1.2 (A:) Sorbitol dehydrogenase {Rhodobacter sphaeroides [TaxId: 1063]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Sorbitol dehydrogenase species: Rhodobacter sphaeroides [TaxId: 1063]
Probab=85.94 E-value=0.64 Score=36.32 Aligned_cols=78 Identities=12% Similarity=0.098 Sum_probs=51.4
Q ss_pred CCCCeEEEecCCCC---HHHHHHHHhCCEEEEEcCCCcHHHHHHHHHHHHHcCCceEEEEeecCCCCc--CcC------C
Q 026274 69 FSGANVVELGAGTS---LPGLVAAKVGSNVTLTDDSNRIEVLKNMRRVCEMNKLNCRVMGLTWGFLDA--SIF------D 137 (241)
Q Consensus 69 ~~~~~VLElGcGtG---l~sl~la~~g~~V~~tD~~~~~~~l~~~~~n~~~n~~~~~~~~l~w~~~~~--~~~------~ 137 (241)
++||++|=-|++.| .++..+++.|++|+++|.++ +.++.+.+. -+.++.+...|..+... ... -
T Consensus 3 L~gK~alVTGas~GIG~aia~~la~~Ga~V~~~~r~~--~~l~~~~~~---~~~~~~~~~~Dvt~~~~v~~~~~~~~~~~ 77 (256)
T d1k2wa_ 3 LDGKTALITGSARGIGRAFAEAYVREGARVAIADINL--EAARATAAE---IGPAACAIALDVTDQASIDRCVAELLDRW 77 (256)
T ss_dssp TTTEEEEEETCSSHHHHHHHHHHHHTTEEEEEEESCH--HHHHHHHHH---HCTTEEEEECCTTCHHHHHHHHHHHHHHH
T ss_pred CCCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCH--HHHHHHHHH---hCCceEEEEeeCCCHHHHHHHHHHHHHHh
Confidence 57899999998877 34556667799999999985 455444333 35566666677665431 000 1
Q ss_pred CCCcEEEEcCCcCC
Q 026274 138 LNPNIILGADVFYD 151 (241)
Q Consensus 138 ~~fDlIl~~dvly~ 151 (241)
++.|+++.+--++.
T Consensus 78 g~iDilVnnAg~~~ 91 (256)
T d1k2wa_ 78 GSIDILVNNAALFD 91 (256)
T ss_dssp SCCCEEEECCCCCC
T ss_pred CCccEEEeeccccc
Confidence 37899987765554
|
| >d2a4ka1 c.2.1.2 (A:2-242) beta-keto acyl carrier protein reductase {Thermus thermophilus, TTHB020 [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: beta-keto acyl carrier protein reductase species: Thermus thermophilus, TTHB020 [TaxId: 274]
Probab=85.25 E-value=1.1 Score=34.57 Aligned_cols=77 Identities=14% Similarity=0.110 Sum_probs=49.1
Q ss_pred CCCCCeEEEecCCCCH---HHHHHHHhCCEEEEEcCCCcHHHHHHHHHHHHHcCCceEEEEeecCCCCc--CcC------
Q 026274 68 RFSGANVVELGAGTSL---PGLVAAKVGSNVTLTDDSNRIEVLKNMRRVCEMNKLNCRVMGLTWGFLDA--SIF------ 136 (241)
Q Consensus 68 ~~~~~~VLElGcGtGl---~sl~la~~g~~V~~tD~~~~~~~l~~~~~n~~~n~~~~~~~~l~w~~~~~--~~~------ 136 (241)
.++||.+|=.|++.|+ ++..+++.|++|++++.+. +.+ ++.++..+.++.+.+.|..+... ...
T Consensus 2 ~l~gK~alItGas~GIG~aia~~l~~~G~~V~~~~r~~--~~~---~~~~~~~~~~~~~~~~Dls~~~~i~~~~~~i~~~ 76 (241)
T d2a4ka1 2 RLSGKTILVTGAASGIGRAALDLFAREGASLVAVDREE--RLL---AEAVAALEAEAIAVVADVSDPKAVEAVFAEALEE 76 (241)
T ss_dssp TTTTCEEEEESTTSHHHHHHHHHHHHTTCEEEEEESCH--HHH---HHHHHTCCSSEEEEECCTTSHHHHHHHHHHHHHH
T ss_pred cCCCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCH--HHH---HHHHHHcCCceEEEEecCCCHHHHHHHHHHHHHH
Confidence 4689999999999874 3455666699999999995 333 33333345556666666654321 000
Q ss_pred CCCCcEEEEcCCc
Q 026274 137 DLNPNIILGADVF 149 (241)
Q Consensus 137 ~~~fDlIl~~dvl 149 (241)
-.+.|+++.+-..
T Consensus 77 ~g~iDiLinnAg~ 89 (241)
T d2a4ka1 77 FGRLHGVAHFAGV 89 (241)
T ss_dssp HSCCCEEEEGGGG
T ss_pred hCCccEecccccc
Confidence 1378988876443
|
| >d1sbya1 c.2.1.2 (A:1-254) Drosophila alcohol dehydrogenase {Fly (Drosophila lebanonensis) [TaxId: 7225]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Drosophila alcohol dehydrogenase species: Fly (Drosophila lebanonensis) [TaxId: 7225]
Probab=85.16 E-value=1.3 Score=34.48 Aligned_cols=87 Identities=13% Similarity=0.044 Sum_probs=49.8
Q ss_pred CCCCeEEEecCCCCH---HHHHHHHhCCEEEEE-cCCCcHHHHHHHHHHHHHcCCceEEEEeecCCCCcCc---C-----
Q 026274 69 FSGANVVELGAGTSL---PGLVAAKVGSNVTLT-DDSNRIEVLKNMRRVCEMNKLNCRVMGLTWGFLDASI---F----- 136 (241)
Q Consensus 69 ~~~~~VLElGcGtGl---~sl~la~~g~~V~~t-D~~~~~~~l~~~~~n~~~n~~~~~~~~l~w~~~~~~~---~----- 136 (241)
++||.||=-|++.|+ ++..+++.|++|+++ +..+..+.+. +......+..+.+...|........ .
T Consensus 3 l~gK~vlITGgs~GIG~~~A~~la~~G~~vii~~r~~~~~~~~~--~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~ 80 (254)
T d1sbya1 3 LTNKNVIFVAALGGIGLDTSRELVKRNLKNFVILDRVENPTALA--ELKAINPKVNITFHTYDVTVPVAESKKLLKKIFD 80 (254)
T ss_dssp CTTCEEEEETTTSHHHHHHHHHHHHTCCSEEEEEESSCCHHHHH--HHHHHCTTSEEEEEECCTTSCHHHHHHHHHHHHH
T ss_pred CCCCEEEEecCCCHHHHHHHHHHHHCCCEEEEEECCcccHHHHH--HHHhhCCCCCEEEEEeecCCCHHHHHHHHHHHHH
Confidence 689999999999884 344556669987666 4444322222 1122223345556666554221111 1
Q ss_pred -CCCCcEEEEcCCcCCCccHHH
Q 026274 137 -DLNPNIILGADVFYDASAFDD 157 (241)
Q Consensus 137 -~~~fDlIl~~dvly~~~~~~~ 157 (241)
-.+.|+++.+--....+..+.
T Consensus 81 ~~g~iDilvnnAG~~~~~~~~~ 102 (254)
T d1sbya1 81 QLKTVDILINGAGILDDHQIER 102 (254)
T ss_dssp HHSCCCEEEECCCCCCTTCHHH
T ss_pred HcCCCCEEEeCCCCCCHHHHHH
Confidence 137899998877776665443
|
| >d1tt7a2 c.2.1.1 (A:128-294) Hypothetical protein YhfP {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Hypothetical protein YhfP species: Bacillus subtilis [TaxId: 1423]
Probab=85.10 E-value=1 Score=32.94 Aligned_cols=99 Identities=9% Similarity=-0.049 Sum_probs=53.0
Q ss_pred HHhccCCCCCCeEEEecCC--CCHHHHHHHH-hCCEEEEEcCCCcHHHHHHHHHHHHHcCCceEEEEeecC-CCCcCcCC
Q 026274 62 VWQQRYRFSGANVVELGAG--TSLPGLVAAK-VGSNVTLTDDSNRIEVLKNMRRVCEMNKLNCRVMGLTWG-FLDASIFD 137 (241)
Q Consensus 62 l~~~~~~~~~~~VLElGcG--tGl~sl~la~-~g~~V~~tD~~~~~~~l~~~~~n~~~n~~~~~~~~l~w~-~~~~~~~~ 137 (241)
|.+.....++.+||=-|++ .|..++.+|+ .|++|++|.-++. -.+.+++ .+....+..-++. +.......
T Consensus 15 L~~~g~~~~~~~VLV~gaaGgVG~~avQlAk~~Ga~Viat~~s~~--k~~~~~~----lGad~vi~~~~~~~~~~~~~~~ 88 (167)
T d1tt7a2 15 LEQNGLSPEKGSVLVTGATGGVGGIAVSMLNKRGYDVVASTGNRE--AADYLKQ----LGASEVISREDVYDGTLKALSK 88 (167)
T ss_dssp HHHTTCCGGGCCEEEESTTSHHHHHHHHHHHHHTCCEEEEESSSS--THHHHHH----HTCSEEEEHHHHCSSCCCSSCC
T ss_pred HHHhcCCCCCCEEEEeCCcchHHHHHHHHHHHcCCceEEEecCHH--HHHHHHh----hcccceEeccchhchhhhcccC
Confidence 4444444456678877754 5566777776 4999999999862 3333332 3433222111111 11112233
Q ss_pred CCCcEEEEcCCcCCCccHHHHHHHHHHHhhcCCCeEEE
Q 026274 138 LNPNIILGADVFYDASAFDDLFATITYLLQSSPGSVFI 175 (241)
Q Consensus 138 ~~fDlIl~~dvly~~~~~~~ll~~~~~lL~~~~~~~~~ 175 (241)
+.+|+|+-+ + -.+.+....+.|+ +++.++
T Consensus 89 ~gvd~vid~--v-----gg~~~~~~~~~l~--~~G~iv 117 (167)
T d1tt7a2 89 QQWQGAVDP--V-----GGKQLASLLSKIQ--YGGSVA 117 (167)
T ss_dssp CCEEEEEES--C-----CTHHHHHHHTTEE--EEEEEE
T ss_pred CCceEEEec--C-----cHHHHHHHHHHhc--cCceEE
Confidence 578888732 2 2345666777777 455444
|
| >d1gpja2 c.2.1.7 (A:144-302) Glutamyl tRNA-reductase middle domain {Archaeon Methanopyrus kandleri [TaxId: 2320]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Aminoacid dehydrogenase-like, C-terminal domain domain: Glutamyl tRNA-reductase middle domain species: Archaeon Methanopyrus kandleri [TaxId: 2320]
Probab=84.91 E-value=3.3 Score=29.72 Aligned_cols=71 Identities=14% Similarity=0.177 Sum_probs=41.2
Q ss_pred CCCCCCeEEEecCC-CC-HHHHHHHHhCC-EEEEEcCCCcHHHHHHHHHHHHHcCCceEEEEeecCCCCcCcCCCCCcEE
Q 026274 67 YRFSGANVVELGAG-TS-LPGLVAAKVGS-NVTLTDDSNRIEVLKNMRRVCEMNKLNCRVMGLTWGFLDASIFDLNPNII 143 (241)
Q Consensus 67 ~~~~~~~VLElGcG-tG-l~sl~la~~g~-~V~~tD~~~~~~~l~~~~~n~~~n~~~~~~~~l~w~~~~~~~~~~~fDlI 143 (241)
...++++||=+|+| .| .+.-.|...|+ +++.+.-+. +-.+.+.++. +.. ...|.+..... ..+|+|
T Consensus 20 ~~l~~~~ilviGaG~~g~~v~~~L~~~g~~~i~v~nRt~--~ka~~l~~~~---~~~----~~~~~~~~~~l--~~~Div 88 (159)
T d1gpja2 20 GSLHDKTVLVVGAGEMGKTVAKSLVDRGVRAVLVANRTY--ERAVELARDL---GGE----AVRFDELVDHL--ARSDVV 88 (159)
T ss_dssp SCCTTCEEEEESCCHHHHHHHHHHHHHCCSEEEEECSSH--HHHHHHHHHH---TCE----ECCGGGHHHHH--HTCSEE
T ss_pred CCcccCeEEEECCCHHHHHHHHHHHhcCCcEEEEEcCcH--HHHHHHHHhh---hcc----cccchhHHHHh--ccCCEE
Confidence 45788999999987 34 44455666687 799998874 1222222222 221 23454432211 279999
Q ss_pred EEcCC
Q 026274 144 LGADV 148 (241)
Q Consensus 144 l~~dv 148 (241)
+.+=.
T Consensus 89 i~ats 93 (159)
T d1gpja2 89 VSATA 93 (159)
T ss_dssp EECCS
T ss_pred EEecC
Confidence 97743
|
| >d1j6ua1 c.5.1.1 (A:0-88) UDP-N-acetylmuramate-alanine ligase MurC {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: MurCD N-terminal domain superfamily: MurCD N-terminal domain family: MurCD N-terminal domain domain: UDP-N-acetylmuramate-alanine ligase MurC species: Thermotoga maritima [TaxId: 2336]
Probab=84.31 E-value=0.25 Score=32.59 Aligned_cols=65 Identities=12% Similarity=0.168 Sum_probs=38.8
Q ss_pred EEEec-CCCCHHH--HHHHHhCCEEEEEcCCCcHHHHHHHHHHHHHcCCceEEEEeecCCCCcCcCCCCCcEEEEcCCcC
Q 026274 74 VVELG-AGTSLPG--LVAAKVGSNVTLTDDSNRIEVLKNMRRVCEMNKLNCRVMGLTWGFLDASIFDLNPNIILGADVFY 150 (241)
Q Consensus 74 VLElG-cGtGl~s--l~la~~g~~V~~tD~~~~~~~l~~~~~n~~~n~~~~~~~~l~w~~~~~~~~~~~fDlIl~~dvly 150 (241)
|-=+| ||+|+-+ ..|.+.|++|.++|..+. +..+. .+..|+.+.. +..... . ...|+|+.+..+-
T Consensus 4 ihfiGIgG~GMs~LA~~L~~~G~~VsGSD~~~~-~~t~~----L~~~Gi~i~~-----gh~~~~-i-~~~d~vV~SsAI~ 71 (89)
T d1j6ua1 4 IHFVGIGGIGMSAVALHEFSNGNDVYGSNIEET-ERTAY----LRKLGIPIFV-----PHSADN-W-YDPDLVIKTPAVR 71 (89)
T ss_dssp EEEETTTSHHHHHHHHHHHHTTCEEEEECSSCC-HHHHH----HHHTTCCEES-----SCCTTS-C-CCCSEEEECTTCC
T ss_pred EEEEeECHHHHHHHHHHHHhCCCeEEEEeCCCC-hhHHH----HHHCCCeEEe-----eecccc-c-CCCCEEEEecCcC
Confidence 33344 4577554 456667999999999985 34333 4556765421 111111 1 2589999887774
|
| >d1ebda2 c.3.1.5 (A:155-271) Dihydrolipoamide dehydrogenase {Bacillus stearothermophilus [TaxId: 1422]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Dihydrolipoamide dehydrogenase species: Bacillus stearothermophilus [TaxId: 1422]
Probab=84.27 E-value=3.2 Score=27.77 Aligned_cols=65 Identities=14% Similarity=0.179 Sum_probs=43.2
Q ss_pred eEEeccHHHHHHHHHhccCCCCCCeEEEecCC-CC-HHHHHHHHhCCEEEEEcCCCc------HHHHHHHHHHHHHcCCc
Q 026274 49 LFVWPCSVILAEYVWQQRYRFSGANVVELGAG-TS-LPGLVAAKVGSNVTLTDDSNR------IEVLKNMRRVCEMNKLN 120 (241)
Q Consensus 49 ~~~W~~s~~L~~~l~~~~~~~~~~~VLElGcG-tG-l~sl~la~~g~~V~~tD~~~~------~~~l~~~~~n~~~n~~~ 120 (241)
-++|.+...| .. ....++|+=+|+| .| -++..++++|.+|+.++..+. +++.+.+.+..+.+|++
T Consensus 7 ~~i~~s~~~l-----~~--~~~p~~v~IiGgG~ig~E~A~~l~~~G~~Vtlve~~~~il~~~d~~~~~~l~~~l~~~GI~ 79 (117)
T d1ebda2 7 NRILDSTGAL-----NL--GEVPKSLVVIGGGYIGIELGTAYANFGTKVTILEGAGEILSGFEKQMAAIIKKRLKKKGVE 79 (117)
T ss_dssp SSEECHHHHH-----TC--SSCCSEEEEECCSHHHHHHHHHHHHTTCEEEEEESSSSSSTTSCHHHHHHHHHHHHHTTCE
T ss_pred CCEEChhHhh-----Ch--hhcCCeEEEECCCccceeeeeeecccccEEEEEEecceecccccchhHHHHHHHHHhcCCE
Confidence 4577765444 11 1234689999888 44 345566677999999998763 34566777777777775
|
| >d1bdba_ c.2.1.2 (A:) Cis-biphenyl-2,3-dihydrodiol-2,3-dehydrogenase {Pseudomonas sp., lb400 [TaxId: 306]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Cis-biphenyl-2,3-dihydrodiol-2,3-dehydrogenase species: Pseudomonas sp., lb400 [TaxId: 306]
Probab=84.21 E-value=0.99 Score=35.57 Aligned_cols=76 Identities=16% Similarity=0.053 Sum_probs=48.5
Q ss_pred CCCCeEEEecCCCCH---HHHHHHHhCCEEEEEcCCCcHHHHHHHHHHHHHcCCceEEEEeecCCCCc--CcC------C
Q 026274 69 FSGANVVELGAGTSL---PGLVAAKVGSNVTLTDDSNRIEVLKNMRRVCEMNKLNCRVMGLTWGFLDA--SIF------D 137 (241)
Q Consensus 69 ~~~~~VLElGcGtGl---~sl~la~~g~~V~~tD~~~~~~~l~~~~~n~~~n~~~~~~~~l~w~~~~~--~~~------~ 137 (241)
++||++|=-|++.|+ ++..+++.|++|+++|.++ +-++.+.+. .+.++.....|..+... ... -
T Consensus 3 L~gK~alITGas~GIG~aia~~la~~Ga~V~i~~r~~--~~l~~~~~~---~~~~~~~~~~Dv~~~~~~~~~~~~~~~~~ 77 (276)
T d1bdba_ 3 LKGEAVLITGGASGLGRALVDRFVAEGAKVAVLDKSA--ERLAELETD---HGDNVLGIVGDVRSLEDQKQAASRCVARF 77 (276)
T ss_dssp TTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCH--HHHHHHHHH---HGGGEEEEECCTTCHHHHHHHHHHHHHHH
T ss_pred CCCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCH--HHHHHHHHH---cCCCeeEEecccccHHHHHHHHHHHHHHh
Confidence 578999999988773 4556667799999999985 455444432 34455566666654321 000 1
Q ss_pred CCCcEEEEcCCc
Q 026274 138 LNPNIILGADVF 149 (241)
Q Consensus 138 ~~fDlIl~~dvl 149 (241)
.+.|+++.+--+
T Consensus 78 g~idilvnnAG~ 89 (276)
T d1bdba_ 78 GKIDTLIPNAGI 89 (276)
T ss_dssp SCCCEEECCCCC
T ss_pred CCcccccccccc
Confidence 378988865443
|
| >d1qsga_ c.2.1.2 (A:) Enoyl-ACP reductase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Enoyl-ACP reductase species: Escherichia coli [TaxId: 562]
Probab=84.19 E-value=1.7 Score=33.33 Aligned_cols=50 Identities=12% Similarity=0.220 Sum_probs=37.1
Q ss_pred CCCCCeEEEecCCC--CH---HHHHHHHhCCEEEEEcCCCcHHHHHHHHHHHHHcCC
Q 026274 68 RFSGANVVELGAGT--SL---PGLVAAKVGSNVTLTDDSNRIEVLKNMRRVCEMNKL 119 (241)
Q Consensus 68 ~~~~~~VLElGcGt--Gl---~sl~la~~g~~V~~tD~~~~~~~l~~~~~n~~~n~~ 119 (241)
.++||++|=-|++. |+ ++..+++.|++|++++.++. ..+.+.+.....+.
T Consensus 2 ~L~gK~~lITGass~~GIG~aiA~~l~~~G~~V~i~~~~~~--~~~~~~~~~~~~~~ 56 (258)
T d1qsga_ 2 FLSGKRILVTGVASKLSIAYGIAQAMHREGAELAFTYQNDK--LKGRVEEFAAQLGS 56 (258)
T ss_dssp TTTTCEEEECCCCSTTSHHHHHHHHHHHTTCEEEEEESSTT--THHHHHHHHHHTTC
T ss_pred cCCCCEEEEECCCCchhHHHHHHHHHHHcCCEEEEEeCCHH--HHHHHHHHHhhcCC
Confidence 46889999999865 74 56678888999999999963 56666655554443
|
| >d2f1ka2 c.2.1.6 (A:1-165) Prephenate dehydrogenase TyrA {Synechocystis sp. pcc 6803 [TaxId: 1148]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: Prephenate dehydrogenase TyrA species: Synechocystis sp. pcc 6803 [TaxId: 1148]
Probab=83.97 E-value=1.1 Score=32.08 Aligned_cols=85 Identities=9% Similarity=-0.015 Sum_probs=45.4
Q ss_pred eEEEecCC-CC-HHHHHHHHhCCEEEEEcCCCcHHHHHHHHHHHHHcCCceEEEEeecCCCCcCcCCCCCcEEEEcCCcC
Q 026274 73 NVVELGAG-TS-LPGLVAAKVGSNVTLTDDSNRIEVLKNMRRVCEMNKLNCRVMGLTWGFLDASIFDLNPNIILGADVFY 150 (241)
Q Consensus 73 ~VLElGcG-tG-l~sl~la~~g~~V~~tD~~~~~~~l~~~~~n~~~n~~~~~~~~l~w~~~~~~~~~~~fDlIl~~dvly 150 (241)
+|.=+|+| .| .++..+++.|.+|++.|.++ +.++.+++ .+.-.... .. .+. -...|+|+.+=.
T Consensus 2 kI~iIG~G~mG~~lA~~l~~~g~~V~~~d~~~--~~~~~a~~----~~~~~~~~----~~-~~~--~~~~DiIilavp-- 66 (165)
T d2f1ka2 2 KIGVVGLGLIGASLAGDLRRRGHYLIGVSRQQ--STCEKAVE----RQLVDEAG----QD-LSL--LQTAKIIFLCTP-- 66 (165)
T ss_dssp EEEEECCSHHHHHHHHHHHHTTCEEEEECSCH--HHHHHHHH----TTSCSEEE----SC-GGG--GTTCSEEEECSC--
T ss_pred EEEEEeecHHHHHHHHHHHHCCCEEEEEECCc--hHHHHHHH----hhccceee----ee-ccc--ccccccccccCc--
Confidence 45556665 22 34445556689999999984 45554433 33211111 11 111 136899886532
Q ss_pred CCccHHHHHHHHHHHhhcCCCeEEE
Q 026274 151 DASAFDDLFATITYLLQSSPGSVFI 175 (241)
Q Consensus 151 ~~~~~~~ll~~~~~lL~~~~~~~~~ 175 (241)
+...+.+++.+...++ ++.+++
T Consensus 67 -~~~~~~vl~~l~~~l~--~~~iv~ 88 (165)
T d2f1ka2 67 -IQLILPTLEKLIPHLS--PTAIVT 88 (165)
T ss_dssp -HHHHHHHHHHHGGGSC--TTCEEE
T ss_pred -Hhhhhhhhhhhhhhcc--ccccee
Confidence 2355666666666664 455443
|
| >d1iz0a2 c.2.1.1 (A:99-269) Quinone oxidoreductase {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Quinone oxidoreductase species: Thermus thermophilus [TaxId: 274]
Probab=83.91 E-value=0.48 Score=34.69 Aligned_cols=50 Identities=20% Similarity=0.242 Sum_probs=34.6
Q ss_pred ccHHHHHHHHHhccCCCCCCeEEEecC-C-CCHHHHHHHHh-CCEEEEEcCCC
Q 026274 53 PCSVILAEYVWQQRYRFSGANVVELGA-G-TSLPGLVAAKV-GSNVTLTDDSN 102 (241)
Q Consensus 53 ~~s~~L~~~l~~~~~~~~~~~VLElGc-G-tGl~sl~la~~-g~~V~~tD~~~ 102 (241)
+.+...+.+..+.....+|.+||=.|+ | .|...+.+|+. |++|++++.++
T Consensus 10 ~~~~~TA~~al~~~~~~~g~~VlI~ga~G~vG~~aiqlak~~G~~vi~~~~~~ 62 (171)
T d1iz0a2 10 PVSFLTAYLALKRAQARPGEKVLVQAAAGALGTAAVQVARAMGLRVLAAASRP 62 (171)
T ss_dssp HHHHHHHHHHHHHTTCCTTCEEEESSTTBHHHHHHHHHHHHTTCEEEEEESSG
T ss_pred HHHHHHHHHHHHHhCCCCCCEEEEEeccccchhhhhhhhcccccccccccccc
Confidence 344444555444455668899999985 3 45677777774 88999999885
|
| >d1npya1 c.2.1.7 (A:103-269) Shikimate 5-dehydrogenase-like protein HI0607 {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Aminoacid dehydrogenase-like, C-terminal domain domain: Shikimate 5-dehydrogenase-like protein HI0607 species: Haemophilus influenzae [TaxId: 727]
Probab=83.80 E-value=3.1 Score=29.93 Aligned_cols=75 Identities=8% Similarity=0.044 Sum_probs=43.4
Q ss_pred HHHHHhccCCCCCCeEEEecCCCCH--HHHHHHHhCC-EEEEEcCCCcHHHHHHHHHHHHHcCCceEEEEeecCCCCcCc
Q 026274 59 AEYVWQQRYRFSGANVVELGAGTSL--PGLVAAKVGS-NVTLTDDSNRIEVLKNMRRVCEMNKLNCRVMGLTWGFLDASI 135 (241)
Q Consensus 59 ~~~l~~~~~~~~~~~VLElGcGtGl--~sl~la~~g~-~V~~tD~~~~~~~l~~~~~n~~~n~~~~~~~~l~w~~~~~~~ 135 (241)
.+.|.++.. .++++||=||||--. +...|.+.|+ +++.+..+. +-.+.+.+.. +. ..++|.
T Consensus 6 ~~~l~~~~~-~~~~~vlIlGaGGaarai~~aL~~~g~~~I~I~nR~~--~ka~~L~~~~---~~----~~~~~~------ 69 (167)
T d1npya1 6 VKLIEKYHL-NKNAKVIVHGSGGMAKAVVAAFKNSGFEKLKIYARNV--KTGQYLAALY---GY----AYINSL------ 69 (167)
T ss_dssp HHHHHHTTC-CTTSCEEEECSSTTHHHHHHHHHHTTCCCEEEECSCH--HHHHHHHHHH---TC----EEESCC------
T ss_pred HHHHHHcCC-CCCCeEEEECCCHHHHHHHHHHHHCCCCEEEEecccH--HHHHHHHHhh---hh----hhhhcc------
Confidence 344444433 378899999999553 3444556686 799998884 3444443322 11 122221
Q ss_pred CCCCCcEEEEcCCc
Q 026274 136 FDLNPNIILGADVF 149 (241)
Q Consensus 136 ~~~~fDlIl~~dvl 149 (241)
....+|+|+.+-++
T Consensus 70 ~~~~~DliINaTpi 83 (167)
T d1npya1 70 ENQQADILVNVTSI 83 (167)
T ss_dssp TTCCCSEEEECSST
T ss_pred cccchhhheecccc
Confidence 12368999977665
|
| >d1ps9a3 c.4.1.1 (A:331-465,A:628-671) 2,4-dienoyl-CoA reductase, middle domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Nucleotide-binding domain superfamily: Nucleotide-binding domain family: N-terminal domain of adrenodoxin reductase-like domain: 2,4-dienoyl-CoA reductase, middle domain species: Escherichia coli [TaxId: 562]
Probab=83.64 E-value=2.8 Score=30.86 Aligned_cols=76 Identities=24% Similarity=0.228 Sum_probs=45.8
Q ss_pred CCCCeEEEecCCC-C-HHHHHHHHhCCEEEEEcCCCcH-----------------HHHHHHHHHHHHcCCceEEEEeecC
Q 026274 69 FSGANVVELGAGT-S-LPGLVAAKVGSNVTLTDDSNRI-----------------EVLKNMRRVCEMNKLNCRVMGLTWG 129 (241)
Q Consensus 69 ~~~~~VLElGcGt-G-l~sl~la~~g~~V~~tD~~~~~-----------------~~l~~~~~n~~~n~~~~~~~~l~w~ 129 (241)
..+++|+=+|+|. | ..+..|+++|++|+..|-++.+ ++++...+.++..++++.+ .
T Consensus 41 ~~~k~V~IIGaGPAGL~AA~~la~~G~~Vtl~E~~~~~GG~l~~~~~~p~~~~~~~~~~~~~~~~~~~gV~i~l---~-- 115 (179)
T d1ps9a3 41 VQKKNLAVVGAGPAGLAFAINAAARGHQVTLFDAHSEIGGQFNIAKQIPGKEEFYETLRYYRRMIEVTGVTLKL---N-- 115 (179)
T ss_dssp SSCCEEEEECCSHHHHHHHHHHHTTTCEEEEEESSSSSCTTHHHHTTSTTCTTHHHHHHHHHHHHHHHTCEEEE---S--
T ss_pred CCCcEEEEECccHHHHHHHHHHHhhccceEEEeccCccCceEEEEEeCcccchHHHHHHHHHHhhhcCCeEEEe---C--
Confidence 3568999999995 4 3466777889999999987521 2345555556656665432 1
Q ss_pred CCCcCcCCCCCcEEEEcCCc
Q 026274 130 FLDASIFDLNPNIILGADVF 149 (241)
Q Consensus 130 ~~~~~~~~~~fDlIl~~dvl 149 (241)
..........||.|+.+--.
T Consensus 116 ~~Vt~~~~~~~d~vilAtG~ 135 (179)
T d1ps9a3 116 HTVTADQLQAFDETILASGI 135 (179)
T ss_dssp CCCCSSSSCCSSEEEECCCE
T ss_pred CEEcccccccceeEEEeecC
Confidence 11111122467877655433
|
| >d1mv8a2 c.2.1.6 (A:1-202) GDP-mannose 6-dehydrogenase {Pseudomonas aeruginosa [TaxId: 287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: GDP-mannose 6-dehydrogenase species: Pseudomonas aeruginosa [TaxId: 287]
Probab=83.50 E-value=0.77 Score=34.44 Aligned_cols=37 Identities=16% Similarity=0.167 Sum_probs=27.3
Q ss_pred eEEEecCC-CC-HHHHHHHHhCCEEEEEcCCCcHHHHHHHH
Q 026274 73 NVVELGAG-TS-LPGLVAAKVGSNVTLTDDSNRIEVLKNMR 111 (241)
Q Consensus 73 ~VLElGcG-tG-l~sl~la~~g~~V~~tD~~~~~~~l~~~~ 111 (241)
+|-=+|+| .| .+++.+|+.|.+|++.|.++ +.++.+.
T Consensus 2 kI~ViGlG~vGl~~a~~la~~g~~V~g~D~n~--~~i~~ln 40 (202)
T d1mv8a2 2 RISIFGLGYVGAVCAGCLSARGHEVIGVDVSS--TKIDLIN 40 (202)
T ss_dssp EEEEECCSTTHHHHHHHHHHTTCEEEEECSCH--HHHHHHH
T ss_pred EEEEECCCHhHHHHHHHHHhCCCcEEEEeCCH--HHHHHhc
Confidence 45567888 66 44777888899999999995 4655544
|
| >d2py6a1 c.66.1.56 (A:14-408) Methyltransferase FkbM {Methylobacillus flagellatus [TaxId: 405]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: FkbM-like domain: Methyltransferase FkbM species: Methylobacillus flagellatus [TaxId: 405]
Probab=83.27 E-value=1.7 Score=36.27 Aligned_cols=48 Identities=15% Similarity=0.053 Sum_probs=38.7
Q ss_pred CCCeEEEecCCCCHHHHHHHHh----CCEEEEEcCCCcHHHHHHHHHHHHHcCC
Q 026274 70 SGANVVELGAGTSLPGLVAAKV----GSNVTLTDDSNRIEVLKNMRRVCEMNKL 119 (241)
Q Consensus 70 ~~~~VLElGcGtGl~sl~la~~----g~~V~~tD~~~~~~~l~~~~~n~~~n~~ 119 (241)
++..++|+||-.|..+..+++. +.+|++.+.++ ...+.+++|+..|..
T Consensus 212 kn~vfIDVGAniG~~s~~f~~~~~~~~~kV~aFEP~p--~n~~~LkkNi~~n~~ 263 (395)
T d2py6a1 212 DSEKMVDCGASIGESLAGLIGVTKGKFERVWMIEPDR--INLQTLQNVLRRYTD 263 (395)
T ss_dssp SSCEEEEETCTTSHHHHHHHHHHTSCCSEEEEECCCH--HHHHHHHHHHHHTTT
T ss_pred CCCEEEECCcCCCHHHHHHHHhcCCCCCEEEEEeCCH--HHHHHHHHHHHhccc
Confidence 4568999999999888776653 24899999995 689999999987653
|
| >d1qora2 c.2.1.1 (A:113-291) Quinone oxidoreductase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Quinone oxidoreductase species: Escherichia coli [TaxId: 562]
Probab=82.98 E-value=2.2 Score=30.70 Aligned_cols=44 Identities=14% Similarity=-0.020 Sum_probs=32.0
Q ss_pred cCCCCCCeEEEecCCC--CHHHHHHHH-hCCEEEEEcCCCcHHHHHHHH
Q 026274 66 RYRFSGANVVELGAGT--SLPGLVAAK-VGSNVTLTDDSNRIEVLKNMR 111 (241)
Q Consensus 66 ~~~~~~~~VLElGcGt--Gl~sl~la~-~g~~V~~tD~~~~~~~l~~~~ 111 (241)
....+|.+||=.|+|. |...+.+|+ .|++|++++.++ +-++.++
T Consensus 24 ~~l~~g~~Vlv~ga~g~vG~~~iqlak~~Ga~Vi~~~~s~--~k~~~~~ 70 (179)
T d1qora2 24 YEIKPDEQFLFHAAAGGVGLIACQWAKALGAKLIGTVGTA--QKAQSAL 70 (179)
T ss_dssp SCCCTTCEEEESSTTBHHHHHHHHHHHHHTCEEEEEESSH--HHHHHHH
T ss_pred hCCCCCCEEEEEccccccchHHHHHHHHhCCeEeecccch--HHHHHHH
Confidence 3455788999997774 567777776 489999999996 3444444
|
| >d1gesa2 c.3.1.5 (A:147-262) Glutathione reductase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Glutathione reductase species: Escherichia coli [TaxId: 562]
Probab=82.92 E-value=1.7 Score=29.32 Aligned_cols=50 Identities=18% Similarity=0.179 Sum_probs=36.1
Q ss_pred CCeEEEecCC-CC-HHHHHHHHhCCEEEEEcCCC------cHHHHHHHHHHHHHcCCc
Q 026274 71 GANVVELGAG-TS-LPGLVAAKVGSNVTLTDDSN------RIEVLKNMRRVCEMNKLN 120 (241)
Q Consensus 71 ~~~VLElGcG-tG-l~sl~la~~g~~V~~tD~~~------~~~~l~~~~~n~~~n~~~ 120 (241)
.++|+=+|+| +| -++..++++|.+|+.++..+ .+++.+.+++..+.++++
T Consensus 21 p~~vvIiGgG~ig~E~A~~l~~~G~~Vtlve~~~~~l~~~d~~~~~~~~~~l~~~GV~ 78 (116)
T d1gesa2 21 PERVAVVGAGYIGVELGGVINGLGAKTHLFEMFDAPLPSFDPMISETLVEVMNAEGPQ 78 (116)
T ss_dssp CSEEEEECCSHHHHHHHHHHHHTTCEEEEECSSSSSSTTSCHHHHHHHHHHHHHHSCE
T ss_pred CCEEEEECCChhhHHHHHHhhccccEEEEEeecchhhhhcchhhHHHHHHHHHHCCCE
Confidence 3678888887 44 33445566799999999986 345667778888888864
|
| >d1cdoa2 c.2.1.1 (A:165-339) Alcohol dehydrogenase {Cod (Gadus callarias) [TaxId: 8053]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Alcohol dehydrogenase species: Cod (Gadus callarias) [TaxId: 8053]
Probab=81.54 E-value=1.7 Score=31.30 Aligned_cols=109 Identities=9% Similarity=0.018 Sum_probs=57.6
Q ss_pred cHHHHHHHHH-hccCCCCCCeEEEecCCCC-HHHHHHHH-hCC-EEEEEcCCCcHHHHHHHHHHHHHcCCceEEEEeecC
Q 026274 54 CSVILAEYVW-QQRYRFSGANVVELGAGTS-LPGLVAAK-VGS-NVTLTDDSNRIEVLKNMRRVCEMNKLNCRVMGLTWG 129 (241)
Q Consensus 54 ~s~~L~~~l~-~~~~~~~~~~VLElGcGtG-l~sl~la~-~g~-~V~~tD~~~~~~~l~~~~~n~~~n~~~~~~~~l~w~ 129 (241)
++...+.... ......+|.+||=+|||.+ +..+.+++ .|+ +|+++|.++. -++.+++ -+... ..++.
T Consensus 11 ca~~Tay~a~~~~a~~k~g~~VlI~G~Gg~g~~~~~~~~~~g~~~Vi~~~~~~~--rl~~a~~----~GAd~---~in~~ 81 (175)
T d1cdoa2 11 CGVSTGFGAAVNTAKVEPGSTCAVFGLGAVGLAAVMGCHSAGAKRIIAVDLNPD--KFEKAKV----FGATD---FVNPN 81 (175)
T ss_dssp THHHHHHHHHHTTTCCCTTCEEEEECCSHHHHHHHHHHHHTTCSEEEEECSCGG--GHHHHHH----TTCCE---EECGG
T ss_pred cHHHHHHHHHHHhhCCCCCCEEEEEecCCccchHHHHHHHHhhchheeecchHH--HHHHHHH----cCCcE---EEcCC
Confidence 4444444333 4445668889999999964 44444444 455 8999999973 4444433 34332 12232
Q ss_pred CCCcC-------cCCCCCcEEEEcCCcCCCccHHHHHHHHHHHhhcCCCeEEEEE
Q 026274 130 FLDAS-------IFDLNPNIILGADVFYDASAFDDLFATITYLLQSSPGSVFITT 177 (241)
Q Consensus 130 ~~~~~-------~~~~~fDlIl~~dvly~~~~~~~ll~~~~~lL~~~~~~~~~~~ 177 (241)
+.... .....+|+|+- ..-....+.....+++++++.+++..
T Consensus 82 ~~~~~~~~~~~~~~~~G~d~vid------~~G~~~~~~~a~~~~~~g~~~~~~~g 130 (175)
T d1cdoa2 82 DHSEPISQVLSKMTNGGVDFSLE------CVGNVGVMRNALESCLKGWGVSVLVG 130 (175)
T ss_dssp GCSSCHHHHHHHHHTSCBSEEEE------CSCCHHHHHHHHHTBCTTTCEEEECS
T ss_pred CcchhHHHHHHhhccCCcceeee------ecCCHHHHHHHHHHhhCCCcceeEEE
Confidence 22111 11236788763 33345556666666654333333333
|
| >d1lvla2 c.3.1.5 (A:151-265) Dihydrolipoamide dehydrogenase {Pseudomonas putida [TaxId: 303]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Dihydrolipoamide dehydrogenase species: Pseudomonas putida [TaxId: 303]
Probab=81.11 E-value=3.2 Score=27.73 Aligned_cols=67 Identities=18% Similarity=0.235 Sum_probs=42.3
Q ss_pred cceEEeccHHHHHHHHHhccCCCCCCeEEEecCC-CC-HHHHHHHHhCCEEEEEcCCCc------HHHHHHHHHHHHHcC
Q 026274 47 YGLFVWPCSVILAEYVWQQRYRFSGANVVELGAG-TS-LPGLVAAKVGSNVTLTDDSNR------IEVLKNMRRVCEMNK 118 (241)
Q Consensus 47 ~g~~~W~~s~~L~~~l~~~~~~~~~~~VLElGcG-tG-l~sl~la~~g~~V~~tD~~~~------~~~l~~~~~n~~~n~ 118 (241)
.|.++|.+...| ..+ ...++++=+|+| .| -++..++++|.+|+.++..+. +++.+.+++..+.++
T Consensus 4 ~g~~~~~s~~~l-----~~~--~~p~~vvIiGgG~~G~E~A~~l~~~g~~Vtlve~~~~il~~~d~~~~~~l~~~l~~~g 76 (115)
T d1lvla2 4 LGGPVISSTEAL-----APK--ALPQHLVVVGGGYIGLELGIAYRKLGAQVSVVEARERILPTYDSELTAPVAESLKKLG 76 (115)
T ss_dssp CBTTEECHHHHT-----CCS--SCCSEEEEECCSHHHHHHHHHHHHHTCEEEEECSSSSSSTTSCHHHHHHHHHHHHHHT
T ss_pred CCCcEECChHHh-----Ccc--cCCCeEEEECCCHHHHHHHHHHhhcccceEEEeeeccccccccchhHHHHHHHHHhhc
Confidence 355677654332 211 123688888887 44 335556667999999998752 345566777777777
Q ss_pred Cc
Q 026274 119 LN 120 (241)
Q Consensus 119 ~~ 120 (241)
++
T Consensus 77 V~ 78 (115)
T d1lvla2 77 IA 78 (115)
T ss_dssp CE
T ss_pred ce
Confidence 64
|
| >d1nvta1 c.2.1.7 (A:111-287) Shikimate 5-dehydrogenase AroE {Archaeon Methanococcus jannaschii [TaxId: 2190]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Aminoacid dehydrogenase-like, C-terminal domain domain: Shikimate 5-dehydrogenase AroE species: Archaeon Methanococcus jannaschii [TaxId: 2190]
Probab=80.76 E-value=0.93 Score=33.21 Aligned_cols=131 Identities=15% Similarity=0.046 Sum_probs=61.9
Q ss_pred HHHhccCCCCCCeEEEecCCCCHHHHHHHHh-CCEEEEEcCCCcHHHHHHHHHHHHHc--CCceEEEEeecCCCCcCcCC
Q 026274 61 YVWQQRYRFSGANVVELGAGTSLPGLVAAKV-GSNVTLTDDSNRIEVLKNMRRVCEMN--KLNCRVMGLTWGFLDASIFD 137 (241)
Q Consensus 61 ~l~~~~~~~~~~~VLElGcGtGl~sl~la~~-g~~V~~tD~~~~~~~l~~~~~n~~~n--~~~~~~~~l~w~~~~~~~~~ 137 (241)
-|.++....++++||=||||--.-++..+-. ..+|+....+. +-.+.+...+... ..... ..+|.+... ..
T Consensus 8 ~l~~~~~~~~~k~vlIlGaGG~arai~~aL~~~~~i~I~nR~~--~ka~~l~~~~~~~~~~~~~~--~~~~~~~~~--~~ 81 (177)
T d1nvta1 8 ALEEEIGRVKDKNIVIYGAGGAARAVAFELAKDNNIIIANRTV--EKAEALAKEIAEKLNKKFGE--EVKFSGLDV--DL 81 (177)
T ss_dssp HHHHHHCCCCSCEEEEECCSHHHHHHHHHHTSSSEEEEECSSH--HHHHHHHHHHHHHHTCCHHH--HEEEECTTC--CC
T ss_pred HHHHhCCCcCCCEEEEECCcHHHHHHHHHHccccceeeehhhh--hHHHHHHHHHHHhhchhhhh--hhhhhhhhh--cc
Confidence 3444455689999999999943333333322 23899998884 3444333333221 11111 123333221 12
Q ss_pred CCCcEEEEcCCcCCCccHHHHHHHHHHHhhcCCCeEEEEEeeccCchhHHHHHHHHcCCEEEE
Q 026274 138 LNPNIILGADVFYDASAFDDLFATITYLLQSSPGSVFITTYHNRSGHHLIEFLMVKWGLKCVK 200 (241)
Q Consensus 138 ~~fDlIl~~dvly~~~~~~~ll~~~~~lL~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~ 200 (241)
..+|+|+.+-.+-..+..+.....-...+. .+..++-+.|.++.+. +....++.|..+..
T Consensus 82 ~~~dliIn~tp~g~~~~~~~~~~~~~~~~~-~~~~v~D~~y~p~~T~--l~~~a~~~G~~~i~ 141 (177)
T d1nvta1 82 DGVDIIINATPIGMYPNIDVEPIVKAEKLR-EDMVVMDLIYNPLETV--LLKEAKKVNAKTIN 141 (177)
T ss_dssp TTCCEEEECSCTTCTTCCSSCCSSCSTTCC-SSSEEEECCCSSSSCH--HHHHHHTTTCEEEC
T ss_pred chhhhhccCCcccccccccccchhhhhccC-cccceeeecCCcHhHH--HHHHHHHCCCcccC
Confidence 368999877666432111100000001121 1223334445555543 33445677777654
|
| >d1h2ba2 c.2.1.1 (A:155-326) Alcohol dehydrogenase {Archaeon Aeropyrum pernix [TaxId: 56636]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Alcohol dehydrogenase species: Archaeon Aeropyrum pernix [TaxId: 56636]
Probab=80.73 E-value=2.3 Score=30.57 Aligned_cols=95 Identities=21% Similarity=0.181 Sum_probs=52.9
Q ss_pred CCCCCeEEEecCC-CCHHHHHHHH-hCC-EEEEEcCCCcHHHHHHHHHHHHHcCCceEEEEeecCCCC-----cCcCCCC
Q 026274 68 RFSGANVVELGAG-TSLPGLVAAK-VGS-NVTLTDDSNRIEVLKNMRRVCEMNKLNCRVMGLTWGFLD-----ASIFDLN 139 (241)
Q Consensus 68 ~~~~~~VLElGcG-tGl~sl~la~-~g~-~V~~tD~~~~~~~l~~~~~n~~~n~~~~~~~~l~w~~~~-----~~~~~~~ 139 (241)
..+|.+||=.||| .|+..+.+++ .|+ .|+++|.++ +-++.+++ .+.. .+ ++..+.. .......
T Consensus 30 ~~~g~~vli~GaG~vG~~~~~~a~~~g~~~vv~~~~~~--~k~~~~~~----~ga~-~~--i~~~~~~~~~~~~~~~~~g 100 (172)
T d1h2ba2 30 LYPGAYVAIVGVGGLGHIAVQLLKVMTPATVIALDVKE--EKLKLAER----LGAD-HV--VDARRDPVKQVMELTRGRG 100 (172)
T ss_dssp CCTTCEEEEECCSHHHHHHHHHHHHHCCCEEEEEESSH--HHHHHHHH----TTCS-EE--EETTSCHHHHHHHHTTTCC
T ss_pred cCCCCEEEEeCCChHHHHHHHHHHhhcCcccccccchh--HHHHHHhh----cccc-ee--ecCcccHHHHHHHhhCCCC
Confidence 4567899999998 5566666665 576 889999995 34554443 3332 12 2222211 0111236
Q ss_pred CcEEEEcCCcCCCccHHHHHHHHHHHhhcCCCeEEEEEe
Q 026274 140 PNIILGADVFYDASAFDDLFATITYLLQSSPGSVFITTY 178 (241)
Q Consensus 140 fDlIl~~dvly~~~~~~~ll~~~~~lL~~~~~~~~~~~~ 178 (241)
+|+|+- ...-...++...+++++ +|.+++++.
T Consensus 101 ~d~vid------~~g~~~~~~~a~~~l~~-~G~iv~~G~ 132 (172)
T d1h2ba2 101 VNVAMD------FVGSQATVDYTPYLLGR-MGRLIIVGY 132 (172)
T ss_dssp EEEEEE------SSCCHHHHHHGGGGEEE-EEEEEECCC
T ss_pred ceEEEE------ecCcchHHHHHHHHHhC-CCEEEEEeC
Confidence 888773 23334456666777773 233444444
|
| >d1ydea1 c.2.1.2 (A:4-253) Retinal dehydrogenase/reductase 3 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Retinal dehydrogenase/reductase 3 species: Human (Homo sapiens) [TaxId: 9606]
Probab=80.69 E-value=1.5 Score=34.01 Aligned_cols=76 Identities=13% Similarity=0.081 Sum_probs=49.0
Q ss_pred CCCCCeEEEecCCCC---HHHHHHHHhCCEEEEEcCCCcHHHHHHHHHHHHHcCCceEEEEeecCCCCc--CcC------
Q 026274 68 RFSGANVVELGAGTS---LPGLVAAKVGSNVTLTDDSNRIEVLKNMRRVCEMNKLNCRVMGLTWGFLDA--SIF------ 136 (241)
Q Consensus 68 ~~~~~~VLElGcGtG---l~sl~la~~g~~V~~tD~~~~~~~l~~~~~n~~~n~~~~~~~~l~w~~~~~--~~~------ 136 (241)
.++||++|=-|++.| .++..+++.|++|+++|.++ +.++.+.+. .....+...|..+... ...
T Consensus 3 rl~GK~alITGas~GIG~aia~~la~~Ga~V~i~~r~~--~~~~~~~~~----~~~~~~~~~Dvs~~~~v~~~~~~~~~~ 76 (250)
T d1ydea1 3 RYAGKVVVVTGGGRGIGAGIVRAFVNSGARVVICDKDE--SGGRALEQE----LPGAVFILCDVTQEDDVKTLVSETIRR 76 (250)
T ss_dssp TTTTCEEEEETCSSHHHHHHHHHHHHTTCEEEEEESCH--HHHHHHHHH----CTTEEEEECCTTSHHHHHHHHHHHHHH
T ss_pred CCCCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCH--HHHHHHHHh----cCCCeEEEccCCCHHHHHHHHHHHHHh
Confidence 578999999999887 34555667799999999995 455544432 2234556666554321 000
Q ss_pred CCCCcEEEEcCCc
Q 026274 137 DLNPNIILGADVF 149 (241)
Q Consensus 137 ~~~fDlIl~~dvl 149 (241)
-.+.|+++.+--+
T Consensus 77 ~g~iDilVnnAG~ 89 (250)
T d1ydea1 77 FGRLDCVVNNAGH 89 (250)
T ss_dssp HSCCCEEEECCCC
T ss_pred cCCCCEEEecccc
Confidence 1378998866543
|
| >d1vi2a1 c.2.1.7 (A:107-288) Putative shikimate dehydrogenase YdiB {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Aminoacid dehydrogenase-like, C-terminal domain domain: Putative shikimate dehydrogenase YdiB species: Escherichia coli [TaxId: 562]
Probab=80.20 E-value=1.4 Score=32.25 Aligned_cols=88 Identities=18% Similarity=0.203 Sum_probs=47.9
Q ss_pred HHHHHhccCCCCCCeEEEecCC-CC-HHHHHHHHhCC-EEEEEcCCCcHHHHHHH---HHHHHHcCCceEEEEeecCCCC
Q 026274 59 AEYVWQQRYRFSGANVVELGAG-TS-LPGLVAAKVGS-NVTLTDDSNRIEVLKNM---RRVCEMNKLNCRVMGLTWGFLD 132 (241)
Q Consensus 59 ~~~l~~~~~~~~~~~VLElGcG-tG-l~sl~la~~g~-~V~~tD~~~~~~~l~~~---~~n~~~n~~~~~~~~l~w~~~~ 132 (241)
.+-+.......++++||=|||| +| .+...+++.|+ +++..+.++. -++.+ .+....+.. ..+...+|.+..
T Consensus 6 ~~~l~~~~~~l~~k~vlIlGaGGaarai~~al~~~g~~~i~i~nR~~~--~~~~~~~l~~~~~~~~~-~~~~~~~~~~~~ 82 (182)
T d1vi2a1 6 IRAIKESGFDIKGKTMVLLGAGGASTAIGAQGAIEGLKEIKLFNRRDE--FFDKALAFAQRVNENTD-CVVTVTDLADQQ 82 (182)
T ss_dssp HHHHHHTTCCCTTCEEEEECCSHHHHHHHHHHHHTTCSEEEEEECSST--THHHHHHHHHHHHHHSS-CEEEEEETTCHH
T ss_pred HHHHHHcCCCcCCCEEEEECCcHHHHHHHHHHhhcCCceEeeeccchH--HHHHHHHHHHHHHhhcC-cceEeeeccccc
Confidence 3444444456789999999999 22 22334455576 7888888752 23322 222333322 223455665432
Q ss_pred c-CcCCCCCcEEEEcCCc
Q 026274 133 A-SIFDLNPNIILGADVF 149 (241)
Q Consensus 133 ~-~~~~~~fDlIl~~dvl 149 (241)
. ...-..+|+|+.+-++
T Consensus 83 ~~~~~~~~~diiIN~Tp~ 100 (182)
T d1vi2a1 83 AFAEALASADILTNGTKV 100 (182)
T ss_dssp HHHHHHHTCSEEEECSST
T ss_pred chhhhhcccceeccccCC
Confidence 1 0001268999877555
|