Citrus Sinensis ID: 026302

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240
Protein Sequence
MAAITSVSQLHSSLSSLYPNYRSSPLILAPKTNQDTTICCLTVRSFTFSRRRLSSQSVPRGLIIQNAATKPAKSPAEEDWKTKRELLLQKRVRSVEAKEALRLQKENNFVILDVRPEAEFKEAHPPGAINVQIYRLIKEWTAWDIARRAAFAFFGIFSGTEENPEFLQSVESQLDKDAKIIVACATGGTMKPSQNLPEGQQSRSLIAAYLLVLNGYKNVYHLEGGLYKWFKEELPEVSEE
Secondary Structure (PSIPRED)
cccccccccccccccccccccccccccccccccccccEEEEccccccccccccccccccccccccccccccccccccccHHHHHHHHHHccccEEcHHHHHHHHHccccEEEEcccHHHHHHccccccEEEcHHHHHHHcHHHHHHHHHHHHHHcccccccccHHHHHHHHHHcccccEEEEEEccccccccccccccccccHHHHHHHHHHHccccccccccccHHHHHHccccccccc
Secondary Structure Prediction (SSPRO)
ccEEEEEccccccccccccccccccHccccccccccccEEEEcEccccEEEEEEEccccccEEEcccccccccccHHHHHHHHHHHHHHcccccccHHHHHHHHHccccEEEEcccHHHHHHccccccEEcEEEEEcccccHHHHHHHHHHHHHcccccccccHHHHHHHHHHccccccEEEEEccccccccccccccccccHHHHHHHHHHHcccccEEEHccHHHHHHHccccccccc
Coil and Loop (DISEMBL)
MAAITSVSQLHSSLsslypnyrssplilapktnqdtticcltvrsftfsrrrlssqsvprgliiqnaatkpakspaeedWKTKRELLLQKRVRSVEAKEALRLQKennfvildvrpeaefkeahppgaiNVQIYRLIKEWTAWDIARRAAFAFFgifsgteenpEFLQSVESQLDKDAKIIVACAtggtmkpsqnlpegqqSRSLIAAYLLVLNGYKnvyhlegglykwfkeelpevsee
Flexible Loop (DISEMBL)
MAAITSVSQLHSSLSSLYPNYRSSPLIlapktnqdttICCLTVRSFTfsrrrlssqsvprgliiqnaatkpakspaeedwkTKRELLLQKRVRSVEAkealrlqkennfviLDVRpeaefkeahppgaiNVQIYRLIKEWTAWDIARRAAFAFFGIFSGTEENPEFLQSVESQLDKDAKIIVACATggtmkpsqnlpegqQSRSLIAAYLLVLNGYKNVYHLEGGLYKWFKEELPEVSEE
Low Complexity Region (SEG)
MAAITsvsqlhsslsslYPNYRSSPLILAPKTNQDTTICCltvrsftfsrrrlssQSVPRGLIIQNAATKPAKSPAEEDWKTKRELLLQKRVRSVEAKEALRLQKENNFVILDVRPEAEFKEAHPPGAINVQIYRLIKEWTAWDiarraafaffgifSGTEENPEFLQSVESQLDKDAKIIVACATGGTMKPSQNLPEGQQSRSLIAAYLLVLNGYKNVYHLEGGLYKWFKEELPEVSEE
Disordered region (IsUnstruct)
************************PLILAPKTNQDTTICCLTVRSFTFSRR***********I************************************ALRLQKENNFVILDVRPEAEFKEAHPPGAINVQIYRLIKEWTAWDIARRAAFAFFGIFSGTEEN*EFLQ*****LDKDAKIIVACATG****************SLIAAYLLVLNGYKNVYHLEGGLYKWFK*********
Disordered Region (DISOPRED)
************************************************************************************ELLLQKRVRSVEAKEALRLQKENNFVILDVRPEAEFKEAHPPGAINVQIYRLIKEWTAWDIARRAAFAFFGIFSGTEENPEFLQSVESQLDKDAKIIVACATGGTMKPSQNLPEGQQSRSLIAAYLLVLNGYKNVYHLEGGLYKWFKEELPE****
Disordered Region (DISEMBL)
**************SSLYPNYRSSPLILAPKTNQDTTICCLTVRSFTFSRRRLSSQSVPRGLIIQNA*************KTKRELLLQKRVRSVEAKEALRLQKENNFVILDVRPEAEFKEAHPPGAINVQIYRLIKEWTAWDIARRAAFAFFGIFSGTEENPEFLQSVESQLDKDAKIIVACATGGTMKPSQNLPEGQQSRSLIAAYLLVLNGYKNVYHLEGGLYKWFKEELPEVSEE
Disordered Region (DISPRO)
*AAITSVSQLHSSLSSL****RSSP*ILAP*TNQDTTICCLTVRSFTFSRRRLSSQSVPRGLIIQNAATKPAKSPAEEDWKTKRELLLQKRVRSVEAKEALRLQKENNFVILDVRPEAEFKEAHPPGAINVQIYRLIKEWTAWDIARRAAFAFFGIFSGTEENPEFLQSVESQLDKDAKIIVACATGGTMKPSQNLPEGQQSRSLIAAYLLVLNGYKNVYHLEGGLYKWFKEEL******
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
ooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Coiled Coils (COILS)
MAAITSVSQLHSSLSSLYPNYRSSPLILAPKTNQDTTICCLTVRSFTFSRRRLSSQSVPRGLIIQNAATKPAKSPAEEDWKTKRELLLQKRVRSVEAKEALRLQKENNFVILDVRPEAEFKEAHPPGAINVQIYRLIKEWTAWDIARRAAFAFFGIFSGTEENPEFLQSVESQLDKDAKIIVACATGGTMKPSQNLPEGQQSRSLIAAYLLVLNGYKNVYHLEGGLYKWFKEELPEVSEE
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	240	2.2.26 [Sep-21-2011]
Q94A65	224	Rhodanese-like domain-con	yes	no	0.9	0.964	0.678	8e-83
Q9SR92	214	Rhodanese-like domain-con	no	no	0.558	0.626	0.295	2e-10
O48529	234	Rhodanese-like domain-con	no	no	0.541	0.555	0.283	1e-08
P27626	183	Senescence-associated pro	N/A	no	0.375	0.491	0.32	5e-08
Q39129	120	Thiosulfate sulfurtransfe	no	no	0.379	0.758	0.322	2e-07
Q0WWT7	292	Rhodanese-like domain-con	no	no	0.529	0.434	0.317	3e-07
Q38853	182	Rhodanese-like domain-con	no	no	0.375	0.494	0.296	1e-06
F4IPI4	156	Rhodanese-like domain-con	no	no	0.462	0.711	0.251	4e-05
Q9FKW8	136	Thiosulfate sulfurtransfe	no	no	0.408	0.720	0.294	7e-05
Q59WH7	438	Adenylyltransferase and s	N/A	no	0.375	0.205	0.299	0.0001

>sp|Q94A65|STR14_ARATH Rhodanese-like domain-containing protein 14, chloroplastic OS=Arabidopsis thaliana GN=At4g27700 PE=2 SV=1

 Score =  306 bits (784), Expect = 8e-83,   Method: Compositional matrix adjust.
 Identities = 152/224 (67%), Positives = 178/224 (79%), Gaps = 8/224 (3%)

Query: 12  SSLSSLYPNYRSSPLILAPKTNQDTTICCLTVRSFTFSRRRLSSQSVPRGLIIQNAATKP 71
           +SL+S+   Y SS   L  K++ +T         F+   R  +  S  + L IQ  +TKP
Sbjct: 2   ASLTSIATPYPSSSQALRLKSSGNTL--------FSAGVRSAAMVSGHKTLKIQCTSTKP 53

Query: 72  AKSPAEEDWKTKRELLLQKRVRSVEAKEALRLQKENNFVILDVRPEAEFKEAHPPGAINV 131
           AK  AE DW+ KRELLL+KRVRSV+ KEA RLQKENNFVILDVRPEAE+K  HPPGAINV
Sbjct: 54  AKPAAEVDWRQKRELLLEKRVRSVDVKEAQRLQKENNFVILDVRPEAEYKAGHPPGAINV 113

Query: 132 QIYRLIKEWTAWDIARRAAFAFFGIFSGTEENPEFLQSVESQLDKDAKIIVACATGGTMK 191
           ++YRLI+EWTAWDIARR  FAFFGIFSGTEENPEF+QSVE++LDK+AKIIVAC++ GTMK
Sbjct: 114 EMYRLIREWTAWDIARRLGFAFFGIFSGTEENPEFIQSVEAKLDKEAKIIVACSSAGTMK 173

Query: 192 PSQNLPEGQQSRSLIAAYLLVLNGYKNVYHLEGGLYKWFKEELP 235
           P+QNLPEGQQSRSLIAAYLLVLNGYKNV+HLEGG+Y W KE LP
Sbjct: 174 PTQNLPEGQQSRSLIAAYLLVLNGYKNVFHLEGGIYTWGKEGLP 217

Arabidopsis thaliana (taxid: 3702)

>sp|Q9SR92|STR10_ARATH Rhodanese-like domain-containing protein 10 OS=Arabidopsis thaliana GN=STR10 PE=2 SV=1

 Score = 65.9 bits (159), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 50/169 (29%), Positives = 85/169 (50%), Gaps = 35/169 (20%)

Query: 82  TKRELLLQKRVRSVEAKEALRLQKENNFVILDVRPEAEFKEAHPPGAINVQIY------- 134
           + +EL+L  +VR+VE KEA  +     +++LDVRP  E ++A   G+++V ++       
Sbjct: 35  SGKELILSGKVRAVEPKEANAVVASEGYILLDVRPAWEREKARVKGSLHVPLFVEDPDNG 94

Query: 135 --RLIKEWTAWDIARRAAFAFFGIFSG---TEENPEF-LQSVESQLDKDAKIIVACATGG 188
              L+K+W            + G+++G   T  N EF L+ VE+  DK++K++V C    
Sbjct: 95  PITLLKKWI--------HLGYIGLWTGQRFTMINDEFALRVVEAVPDKESKVLVVC---- 142

Query: 189 TMKPSQNLPEGQQSRSLIAAYLLVLNGYKNVYHLEGGLYKWFKEELPEV 237
                     G+  RSL A   L   GYK++  L GG  +  + + PE+
Sbjct: 143 ----------GEGLRSLAAVSKLHGEGYKSLGWLTGGFNRVSEGDFPEI 181

Arabidopsis thaliana (taxid: 3702)

>sp|O48529|STR9_ARATH Rhodanese-like domain-containing protein 9, chloroplastic OS=Arabidopsis thaliana GN=STR9 PE=2 SV=1

 Score = 60.1 bits (144), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 42/148 (28%), Positives = 74/148 (50%), Gaps = 18/148 (12%)

Query: 83  KRELLLQKRVRSVEAKEALRLQKENNFVILDVRPEAEFKEAHPPGAINVQIYRLIKEWTA 142
           +R L +   ++ V A+EA +L  E  + ++DVR + +F+ AH     ++ ++   ++   
Sbjct: 40  RRSLRIAAELKFVNAEEAKQLIAEEGYSVVDVRDKTQFERAHIKSCSHIPLFIYNEDNDI 99

Query: 143 WDIARRAAF-AFFGIFSG---TEENPEFLQSVESQLDKDAKIIVACATGGTMKPSQNLPE 198
             I +R     F G+F G   T+ NPEFL+SV ++  +D+K+++ C  G           
Sbjct: 100 GTIIKRTVHNNFSGLFFGLPFTKVNPEFLKSVRNEFSQDSKLLLVCQEG----------- 148

Query: 199 GQQSRSLIAAYLLVLNGYKNVYHLEGGL 226
               RS  AA  L   GY+N+  +  GL
Sbjct: 149 ---LRSAAAASRLEEAGYENIACVTSGL 173

Arabidopsis thaliana (taxid: 3702)

>sp|P27626|DIN1_RAPSA Senescence-associated protein DIN1 OS=Raphanus sativus GN=DIN1 PE=2 SV=1

 Score = 58.2 bits (139), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 40/125 (32%), Positives = 53/125 (42%), Gaps = 35/125 (28%)

Query: 112 LDVRPEAEFKEAHPPGAINV-QIYRLIKEWTAWDIARRAAFAFFGIFSGTEENPEFLQSV 170
           LDVR   EF   HP  AINV  +YR                    + SG  +NP FL+ V
Sbjct: 90  LDVRTPDEFSIGHPSRAINVPYMYR--------------------VGSGMVKNPSFLRQV 129

Query: 171 ESQLDKDAKIIVACATGGTMKPSQNLPEGQQSRSLIAAYLLVLNGYKNVYHLEGGLYKWF 230
            S   K  +II+ C +G               RSL+A+  L+  G+  V  + GG   W 
Sbjct: 130 SSHFRKHDEIIIGCESG--------------ERSLMASTELLTAGFTGVTDIAGGYVPWT 175

Query: 231 KEELP 235
           + ELP
Sbjct: 176 ENELP 180

Is thought to act during the early stages of leaf senescence.

Raphanus sativus (taxid: 3726)

>sp|Q39129|STR16_ARATH Thiosulfate sulfurtransferase 16, chloroplastic OS=Arabidopsis thaliana GN=STR16 PE=1 SV=2

 Score = 56.6 bits (135), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 40/124 (32%), Positives = 50/124 (40%), Gaps = 33/124 (26%)

Query: 112 LDVRPEAEFKEAHPPGAINVQIYRLIKEWTAWDIARRAAFAFFGIFSGTEENPEFLQSVE 171
           LDVR   EF + H  GAINV                R A       SG  +NP+FL+ V 
Sbjct: 27  LDVRTPEEFSQGHACGAINVPYMN------------RGA-------SGMSKNPDFLEQVS 67

Query: 172 SQLDKDAKIIVACATGGTMKPSQNLPEGQQSRSLIAAYLLVLNGYKNVYHLEGGLYKWFK 231
           S   +   IIV C +GG              RS+ A   L+  G+  V  + GG   W K
Sbjct: 68  SHFGQSDNIIVGCQSGG--------------RSIKATTDLLHAGFTGVKDIVGGYSAWAK 113

Query: 232 EELP 235
             LP
Sbjct: 114 NGLP 117

Thought to act during the early stages of leaf senescence. Catalyzes the transfer of a sulfur ion from a donor to cyanide or to other thiol compounds. Substrate preference is thiosulfate > 3-mercaptopyruvate.

Arabidopsis thaliana (taxid: 3702)

EC: 2

EC: .

EC: 8

EC: .

EC: 1

EC: .

EC: 1

>sp|Q0WWT7|STR11_ARATH Rhodanese-like domain-containing protein 11, chloroplastic OS=Arabidopsis thaliana GN=STR11 PE=2 SV=1

 Score = 55.8 bits (133), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 46/145 (31%), Positives = 72/145 (49%), Gaps = 18/145 (12%)

Query: 86  LLLQKRVRSVEAKEALRLQKENNFVILDVRPEAEFKEAHPPGAINVQIYRLIKEWTAWDI 145
           LL + +V+ +  +EA      +N  +LDVRP +E  +A   G+  V I+       A  +
Sbjct: 82  LLREGKVKLLTPREAGYAISLSNKPLLDVRPSSERNKAWIKGSTWVPIFDNDDNLDAGTL 141

Query: 146 ARRA-AFAFFGIFSGTEE---NPEFLQSVESQLDKDAKIIVACATGGTMKPSQNLPEGQQ 201
           +++  +FA  G +SG      N  FL  VE +  KD+++IVAC  G              
Sbjct: 142 SKKVTSFAMGGWWSGAPTLSFNRLFLSKVEEKFPKDSELIVACQKG-------------- 187

Query: 202 SRSLIAAYLLVLNGYKNVYHLEGGL 226
            RSL A  LL   GY+N++ ++GGL
Sbjct: 188 LRSLAACELLYNAGYENLFWVQGGL 212

Arabidopsis thaliana (taxid: 3702)

>sp|Q38853|STR15_ARATH Rhodanese-like domain-containing protein 15, chloroplastic OS=Arabidopsis thaliana GN=STR15 PE=2 SV=1

 Score = 53.5 bits (127), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 37/125 (29%), Positives = 51/125 (40%), Gaps = 35/125 (28%)

Query: 112 LDVRPEAEFKEAHPPGAINV-QIYRLIKEWTAWDIARRAAFAFFGIFSGTEENPEFLQSV 170
           LDVR   EF   HP  AINV  +YR                    + SG  +NP FL+ V
Sbjct: 89  LDVRTPDEFSIGHPTRAINVPYMYR--------------------VGSGMVKNPSFLRQV 128

Query: 171 ESQLDKDAKIIVACATGGTMKPSQNLPEGQQSRSLIAAYLLVLNGYKNVYHLEGGLYKWF 230
            S   K  +II+ C +G                S +A+  L+  G+  +  + GG   W 
Sbjct: 129 SSHFRKHDEIIIGCESG--------------QMSFMASTDLLTAGFTAITDIAGGYVAWT 174

Query: 231 KEELP 235
           + ELP
Sbjct: 175 ENELP 179

Arabidopsis thaliana (taxid: 3702)

>sp|F4IPI4|STR17_ARATH Rhodanese-like domain-containing protein 17 OS=Arabidopsis thaliana GN=STR17 PE=2 SV=1

 Score = 48.9 bits (115), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 37/147 (25%), Positives = 61/147 (41%), Gaps = 36/147 (24%)

Query: 91  RVRSVEAKEALRLQKENNFVILDVRPEAEFKEAH--PPGAINVQIYRLIKEWTAWDIARR 148
           +V +++  +A +L  ++ +  LDVR   EFK+ H       NV  +    +         
Sbjct: 31  KVITIDVNQAQKLL-DSGYTFLDVRTVEEFKKGHVDSENVFNVPYWLYTPQ--------- 80

Query: 149 AAFAFFGIFSGTEENPEFLQSVESQLDKDAKIIVACATGGTMKPSQNLPEGQQSRSLIAA 208
                     G E NP FL+ V S  ++   +I+ C +G               RSL A 
Sbjct: 81  ----------GQEINPNFLKHVSSLCNQTDHLILGCKSG--------------VRSLHAT 116

Query: 209 YLLVLNGYKNVYHLEGGLYKWFKEELP 235
             LV +G+K V +++GG   W  +  P
Sbjct: 117 KFLVSSGFKTVRNMDGGYIAWVNKRFP 143

Arabidopsis thaliana (taxid: 3702)

>sp|Q9FKW8|STR18_ARATH Thiosulfate sulfurtransferase 18 OS=Arabidopsis thaliana GN=STR18 PE=1 SV=1

 Score = 47.8 bits (112), Expect = 7e-05,   Method: Compositional matrix adjust.
 Identities = 38/129 (29%), Positives = 51/129 (39%), Gaps = 31/129 (24%)

Query: 112 LDVRPEAEFKEAHPPGAINVQIYRLIKEWTAWDIARRAAFAFFGIFSGTEENPEFLQSVE 171
           LDVR + EF+  H   A  V I  ++                     G  +N EFL+ V 
Sbjct: 33  LDVRTQDEFRRGHCEAAKIVNIPYMLN-----------------TPQGRVKNQEFLEQVS 75

Query: 172 SQLDKDAKIIVACATGGTMKPSQNLPEGQQSRSLIAAYLLVLNGYKNVYHLEGGLYKWFK 231
           S L+    I+V C +G              +RSL A   LV  GYK V ++ GG   W  
Sbjct: 76  SLLNPADDILVGCQSG--------------ARSLKATTELVAAGYKKVRNVGGGYLAWVD 121

Query: 232 EELPEVSEE 240
              P  +EE
Sbjct: 122 HSFPINTEE 130

Catalyzes the transfer of a sulfur ion from a donor to cyanide or to other thiol compounds. Substrate preference is thiosulfate > 3-mercaptopyruvate.

Arabidopsis thaliana (taxid: 3702)

EC: 2

EC: .

EC: 8

EC: .

EC: 1

EC: .

EC: 1

>sp|Q59WH7|UBA4_CANAL Adenylyltransferase and sulfurtransferase UBA4 OS=Candida albicans (strain SC5314 / ATCC MYA-2876) GN=UBA4 PE=3 SV=1

 Score = 46.6 bits (109), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 38/127 (29%), Positives = 51/127 (40%), Gaps = 37/127 (29%)

Query: 103 LQKENNFVILDVRPEAEFKEAHPPGAINVQIYRLIKEWTAWDIARRAAFAFFGIFSGTEE 162
           +Q +   +++DVRP  +F+  H P AINVQ          WD   R A A          
Sbjct: 338 VQNKKKHILIDVRPREQFQITHLPNAINVQ----------WDPTFRKADA---------- 377

Query: 163 NPEFLQSVESQLDKDAKIIVACATGGTMKPSQNLPEGQQSRSLIAAYLLVLNGYKNVYHL 222
                Q +     KD +I V C  G              + S +AA  L+  GY NV  +
Sbjct: 378 ---IEQYLPDDSTKDDEIYVVCRFG--------------NDSQLAAKKLIGMGYPNVRDI 420

Query: 223 EGGLYKW 229
            GGL KW
Sbjct: 421 IGGLDKW 427

Plays a central role in 2-thiolation of mcm(5)S(2)U at tRNA wobble positions of tRNA(Lys), tRNA(Glu) and tRNA(Gln). Acts by mediating the C-terminal thiocarboxylation of sulfur carrier URM1. Its N-terminus first activates URM1 as acyl-adenylates (-COAMP), then the persulfide sulfur on the catalytic cysteine is transferred to URM1 to form thiocarboxylation (-COSH) of its C-terminus. The reaction probably involves hydrogen sulfide that is generated from the persulfide intermediate and that acts as nucleophile towards URM1. Subsequently, a transient disulfide bond is formed. Does not use thiosulfate as sulfur donor; NFS1 probably acting as a sulfur donor for thiocarboxylation reactions. Prior mcm(5) tRNA modification by the elongator complex is required for 2-thiolation. May also be involved in protein urmylation.

Candida albicans (strain SC5314 / ATCC MYA-2876) (taxid: 237561)

EC: 2

EC: .

EC: 8

EC: .

EC: 1

EC: .

EC: -

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	240
449457001	237	PREDICTED: rhodanese-like domain-contain	0.987	1.0	0.775	1e-102
224135067	239	predicted protein [Populus trichocarpa]	0.929	0.933	0.816	9e-95
356552743	235	PREDICTED: uncharacterized protein LOC10	0.954	0.974	0.748	2e-93
224118370	239	predicted protein [Populus trichocarpa]	0.933	0.937	0.794	6e-93
357464053	232	Senescence-associated protein DIN1 [Medi	0.962	0.995	0.710	1e-91
217071574	232	unknown [Medicago truncatula]	0.962	0.995	0.705	4e-91
225455288	233	PREDICTED: uncharacterized protein LOC10	0.970	1.0	0.754	3e-90
255588548	235	conserved hypothetical protein [Ricinus	0.862	0.880	0.793	6e-89
357464055	248	Senescence-associated protein DIN1 [Medi	0.891	0.862	0.705	2e-88
356509206	234	PREDICTED: uncharacterized protein LOC10	0.975	1.0	0.737	2e-88

>gi|449457001|ref|XP_004146237.1| PREDICTED: rhodanese-like domain-containing protein 14, chloroplastic-like [Cucumis sativus] gi|449515971|ref|XP_004165021.1| PREDICTED: rhodanese-like domain-containing protein 14, chloroplastic-like [Cucumis sativus]

 Score =  377 bits (967), Expect = e-102,   Method: Compositional matrix adjust.
 Identities = 186/240 (77%), Positives = 203/240 (84%), Gaps = 3/240 (1%)

Query: 1   MAAITSVSQLHSSLSSLYPNYRSSPLILAPKTNQDTTICCLTVRSFTFSRRRLSSQSVPR 60
           MAA  S   L  + SSL+P  + SPL+ + K   D +  C TVRS  +  ++ SSQS PR
Sbjct: 1   MAAFAS---LPLTSSSLHPVVQFSPLVFSSKVVYDPSSYCFTVRSIRYGNQKFSSQSNPR 57

Query: 61  GLIIQNAATKPAKSPAEEDWKTKRELLLQKRVRSVEAKEALRLQKENNFVILDVRPEAEF 120
            LII  AATK AK+PAEEDWK KRELLLQKRVRSV+A EALRLQKENNFVILDVRPEAEF
Sbjct: 58  SLIILGAATKQAKTPAEEDWKVKRELLLQKRVRSVDANEALRLQKENNFVILDVRPEAEF 117

Query: 121 KEAHPPGAINVQIYRLIKEWTAWDIARRAAFAFFGIFSGTEENPEFLQSVESQLDKDAKI 180
           KE HPPGAINVQIYRLIKEWTAWDIARRAAFAFFGIFSGTEENPEFLQSVES++DKDAKI
Sbjct: 118 KEGHPPGAINVQIYRLIKEWTAWDIARRAAFAFFGIFSGTEENPEFLQSVESKIDKDAKI 177

Query: 181 IVACATGGTMKPSQNLPEGQQSRSLIAAYLLVLNGYKNVYHLEGGLYKWFKEELPEVSEE 240
           IVAC++GGTMKP+QNLPEGQQSRSLIAAYLLVLNGY NV+HLEGGLY WFKE LP VSEE
Sbjct: 178 IVACSSGGTMKPTQNLPEGQQSRSLIAAYLLVLNGYANVFHLEGGLYNWFKEGLPVVSEE 237

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224135067|ref|XP_002321975.1| predicted protein [Populus trichocarpa] gi|222868971|gb|EEF06102.1| predicted protein [Populus trichocarpa]

 Score =  352 bits (902), Expect = 9e-95,   Method: Compositional matrix adjust.
 Identities = 182/223 (81%), Positives = 200/223 (89%)

Query: 17  LYPNYRSSPLILAPKTNQDTTICCLTVRSFTFSRRRLSSQSVPRGLIIQNAATKPAKSPA 76
           LYPNY+SSPLI + KT QD ++   TVRS    R R SS +VPRGL + NAATKPAKSPA
Sbjct: 16  LYPNYQSSPLIFSSKTAQDPSLPFFTVRSNGSLRGRSSSCTVPRGLRVFNAATKPAKSPA 75

Query: 77  EEDWKTKRELLLQKRVRSVEAKEALRLQKENNFVILDVRPEAEFKEAHPPGAINVQIYRL 136
           EEDWKTKRE+LLQK+VRSV+ KEALRLQKENNFVILDVRPEAEFKEAHPPGAINVQ+YRL
Sbjct: 76  EEDWKTKREVLLQKKVRSVDVKEALRLQKENNFVILDVRPEAEFKEAHPPGAINVQVYRL 135

Query: 137 IKEWTAWDIARRAAFAFFGIFSGTEENPEFLQSVESQLDKDAKIIVACATGGTMKPSQNL 196
           IKEWTAWDIARRAAFAFFGIF+GTEENPEF+Q+VES++DK AKIIVAC+ GGTM+PSQNL
Sbjct: 136 IKEWTAWDIARRAAFAFFGIFAGTEENPEFMQTVESKIDKSAKIIVACSAGGTMRPSQNL 195

Query: 197 PEGQQSRSLIAAYLLVLNGYKNVYHLEGGLYKWFKEELPEVSE 239
           PEGQQSRSLIAAYLLVLNGY NV+HLEGGLYKWFKE LP  SE
Sbjct: 196 PEGQQSRSLIAAYLLVLNGYTNVFHLEGGLYKWFKEGLPAESE 238

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356552743|ref|XP_003544722.1| PREDICTED: uncharacterized protein LOC100792221 [Glycine max]

 Score =  347 bits (891), Expect = 2e-93,   Method: Compositional matrix adjust.
 Identities = 173/231 (74%), Positives = 194/231 (83%), Gaps = 2/231 (0%)

Query: 12  SSLSSLYPNYRSSPLILAPKTNQDTTICCLTVRSFTFSRRRLSSQSVPRGLII--QNAAT 69
           +S SSL  +  SS L  + +   D     +  RS     +RL +Q + RGL I  Q+AAT
Sbjct: 5   ASSSSLQTHLHSSLLAPSFEGAHDHNSWWVRARSQKRIGQRLHTQDIARGLRIKVQSAAT 64

Query: 70  KPAKSPAEEDWKTKRELLLQKRVRSVEAKEALRLQKENNFVILDVRPEAEFKEAHPPGAI 129
           KPAKSPAEEDWK KRE LLQKRVRSVE KEALRLQKEN+FV+LDVRPEAEFKEAHPPGAI
Sbjct: 65  KPAKSPAEEDWKVKREFLLQKRVRSVEVKEALRLQKENSFVLLDVRPEAEFKEAHPPGAI 124

Query: 130 NVQIYRLIKEWTAWDIARRAAFAFFGIFSGTEENPEFLQSVESQLDKDAKIIVACATGGT 189
           NVQIYRLIKEWTAWDIARRAAF FFGIFSGTEENPEF+++VE+++DKDAKIIVAC +GGT
Sbjct: 125 NVQIYRLIKEWTAWDIARRAAFLFFGIFSGTEENPEFIKNVEAKIDKDAKIIVACTSGGT 184

Query: 190 MKPSQNLPEGQQSRSLIAAYLLVLNGYKNVYHLEGGLYKWFKEELPEVSEE 240
           ++PSQNLPEGQQSRSLIAAYLLVLNGY NV+HLEGGLYKWFKEELP VSEE
Sbjct: 185 LRPSQNLPEGQQSRSLIAAYLLVLNGYTNVFHLEGGLYKWFKEELPTVSEE 235

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224118370|ref|XP_002317802.1| predicted protein [Populus trichocarpa] gi|118489060|gb|ABK96337.1| unknown [Populus trichocarpa x Populus deltoides] gi|222858475|gb|EEE96022.1| predicted protein [Populus trichocarpa]

 Score =  346 bits (887), Expect = 6e-93,   Method: Compositional matrix adjust.
 Identities = 178/224 (79%), Positives = 198/224 (88%)

Query: 17  LYPNYRSSPLILAPKTNQDTTICCLTVRSFTFSRRRLSSQSVPRGLIIQNAATKPAKSPA 76
           LYPNY+SSPLI + KT QD      T+RS    R RLSS + PRGL + NAATKPAKSPA
Sbjct: 16  LYPNYQSSPLIFSSKTTQDHCSPFFTIRSNGSLRGRLSSSTFPRGLKVLNAATKPAKSPA 75

Query: 77  EEDWKTKRELLLQKRVRSVEAKEALRLQKENNFVILDVRPEAEFKEAHPPGAINVQIYRL 136
           EEDWKTKRE+LL+ +VRSV+ KEALRLQKEN FVILDVRPEAEFKEAHP GAINVQ+YRL
Sbjct: 76  EEDWKTKREVLLKNKVRSVDVKEALRLQKENKFVILDVRPEAEFKEAHPSGAINVQVYRL 135

Query: 137 IKEWTAWDIARRAAFAFFGIFSGTEENPEFLQSVESQLDKDAKIIVACATGGTMKPSQNL 196
           IKEWTAWDIARRAAFAFFGIF+GTEENPEF+Q+VES+++K+AKIIVAC+ GGTMKPSQNL
Sbjct: 136 IKEWTAWDIARRAAFAFFGIFAGTEENPEFMQTVESKINKNAKIIVACSAGGTMKPSQNL 195

Query: 197 PEGQQSRSLIAAYLLVLNGYKNVYHLEGGLYKWFKEELPEVSEE 240
           PEGQQSRSLIAAYLLVLNGYKNV+HLEGGLY WFKE+LP  SEE
Sbjct: 196 PEGQQSRSLIAAYLLVLNGYKNVFHLEGGLYTWFKEDLPAESEE 239

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357464053|ref|XP_003602308.1| Senescence-associated protein DIN1 [Medicago truncatula] gi|355491356|gb|AES72559.1| Senescence-associated protein DIN1 [Medicago truncatula] gi|388515773|gb|AFK45948.1| unknown [Medicago truncatula]

 Score =  342 bits (876), Expect = 1e-91,   Method: Compositional matrix adjust.
 Identities = 169/238 (71%), Positives = 196/238 (82%), Gaps = 7/238 (2%)

Query: 3   AITSVSQLHSSLSSLYPNYRSSPLILAPKTNQDTTICCLTVRSFTFSRRRLSSQSVPRGL 62
           A TS +  + S S L        L+ + +  +D    C+ VRS+  + ++ S  +  RG+
Sbjct: 2   AFTSTALQYPSTSYL------QSLVPSLEGTRDQNSWCVRVRSYKPTSQK-SQLNFARGI 54

Query: 63  IIQNAATKPAKSPAEEDWKTKRELLLQKRVRSVEAKEALRLQKENNFVILDVRPEAEFKE 122
            +Q+AATKPAKSPAEE+WK KRELLLQKRV+SVE KEALRLQKENNFVILDVRPEAEFKE
Sbjct: 55  TVQSAATKPAKSPAEEEWKVKRELLLQKRVKSVEPKEALRLQKENNFVILDVRPEAEFKE 114

Query: 123 AHPPGAINVQIYRLIKEWTAWDIARRAAFAFFGIFSGTEENPEFLQSVESQLDKDAKIIV 182
            HPP AINVQ+YRLIKEWTAWDIARRAAFAFFGIFSGTEENPEF++SV  QLDK+AKIIV
Sbjct: 115 GHPPDAINVQVYRLIKEWTAWDIARRAAFAFFGIFSGTEENPEFIKSVGEQLDKNAKIIV 174

Query: 183 ACATGGTMKPSQNLPEGQQSRSLIAAYLLVLNGYKNVYHLEGGLYKWFKEELPEVSEE 240
           AC+ GGTMKP+QNLP+GQQSRSLIAAYLLVLNGY NV+HLEGGLYKWFKE+LP V+EE
Sbjct: 175 ACSAGGTMKPTQNLPQGQQSRSLIAAYLLVLNGYNNVFHLEGGLYKWFKEDLPAVAEE 232

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|217071574|gb|ACJ84147.1| unknown [Medicago truncatula]

 Score =  340 bits (871), Expect = 4e-91,   Method: Compositional matrix adjust.
 Identities = 168/238 (70%), Positives = 196/238 (82%), Gaps = 7/238 (2%)

Query: 3   AITSVSQLHSSLSSLYPNYRSSPLILAPKTNQDTTICCLTVRSFTFSRRRLSSQSVPRGL 62
           A TS +  + S S L        L+ + +  +D    C+ VRS+  + ++ S  +  RG+
Sbjct: 2   AFTSTALQYPSTSYL------QSLVPSLEGTRDQNSWCVRVRSYKPTSQK-SQLNFARGI 54

Query: 63  IIQNAATKPAKSPAEEDWKTKRELLLQKRVRSVEAKEALRLQKENNFVILDVRPEAEFKE 122
            +Q+AATKPAKSPAEE+WK KRELLLQKRV+SVE KEALRLQKENNFVILDVRPEAEFKE
Sbjct: 55  TVQSAATKPAKSPAEEEWKVKRELLLQKRVKSVEPKEALRLQKENNFVILDVRPEAEFKE 114

Query: 123 AHPPGAINVQIYRLIKEWTAWDIARRAAFAFFGIFSGTEENPEFLQSVESQLDKDAKIIV 182
            HPP AINVQ+YRLIKEWTAWDIARRAAFAFFGIFSGTEENPEF++SV  QLDK+AKIIV
Sbjct: 115 GHPPDAINVQVYRLIKEWTAWDIARRAAFAFFGIFSGTEENPEFIKSVGEQLDKNAKIIV 174

Query: 183 ACATGGTMKPSQNLPEGQQSRSLIAAYLLVLNGYKNVYHLEGGLYKWFKEELPEVSEE 240
           AC+ GGTMKP+QNLP+GQQSRSLIAAYLLVLNGY +V+HLEGGLYKWFKE+LP V+EE
Sbjct: 175 ACSAGGTMKPTQNLPQGQQSRSLIAAYLLVLNGYNHVFHLEGGLYKWFKEDLPAVAEE 232

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225455288|ref|XP_002274646.1| PREDICTED: uncharacterized protein LOC100245212 [Vitis vinifera] gi|302143949|emb|CBI23054.3| unnamed protein product [Vitis vinifera]

 Score =  337 bits (863), Expect = 3e-90,   Method: Compositional matrix adjust.
 Identities = 181/240 (75%), Positives = 204/240 (85%), Gaps = 7/240 (2%)

Query: 1   MAAITSVSQLHSSLSSLYPNYRSSPLILAPKTNQDTTICCLTVRSFTFSRRRLSSQSVPR 60
           MAA+ S++  HSS SSL+P        L+  T+  +       RS   +R+RL S+S  R
Sbjct: 1   MAALASITP-HSS-SSLHPKSH-----LSSNTSHHSISSYCVTRSVRTNRQRLYSESGSR 53

Query: 61  GLIIQNAATKPAKSPAEEDWKTKRELLLQKRVRSVEAKEALRLQKENNFVILDVRPEAEF 120
           GL IQ+AATKPAKSPAEEDWK KRE+LL+K+VRSV+AKEALRLQ+ENNFVILDVRPEAEF
Sbjct: 54  GLKIQSAATKPAKSPAEEDWKIKREVLLEKKVRSVDAKEALRLQQENNFVILDVRPEAEF 113

Query: 121 KEAHPPGAINVQIYRLIKEWTAWDIARRAAFAFFGIFSGTEENPEFLQSVESQLDKDAKI 180
           KEAHPPGAINVQIYRLIKEWTAWDIARRAAFAFFGIF+GTEENPEF+QSVES++DK AKI
Sbjct: 114 KEAHPPGAINVQIYRLIKEWTAWDIARRAAFAFFGIFAGTEENPEFMQSVESKIDKSAKI 173

Query: 181 IVACATGGTMKPSQNLPEGQQSRSLIAAYLLVLNGYKNVYHLEGGLYKWFKEELPEVSEE 240
           IVAC++GGTMKPSQNLPEGQQSRSLIAAYLLVLNGY NV+HLEGGLY WFKE LP VSEE
Sbjct: 174 IVACSSGGTMKPSQNLPEGQQSRSLIAAYLLVLNGYTNVFHLEGGLYTWFKEGLPSVSEE 233

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255588548|ref|XP_002534640.1| conserved hypothetical protein [Ricinus communis] gi|223524858|gb|EEF27743.1| conserved hypothetical protein [Ricinus communis]

 Score =  332 bits (852), Expect = 6e-89,   Method: Compositional matrix adjust.
 Identities = 165/208 (79%), Positives = 182/208 (87%), Gaps = 1/208 (0%)

Query: 34  QDTTICCLTVRSFTFSRRRLSSQSVPRGLIIQN-AATKPAKSPAEEDWKTKRELLLQKRV 92
           QD  +   T R+    + RLSSQ V R  +  + AATKPAKSPAEE+WK KRE LLQK+V
Sbjct: 28  QDLNLSFFTTRTNGSLKGRLSSQKVSRSSLRVSSAATKPAKSPAEEEWKVKRETLLQKKV 87

Query: 93  RSVEAKEALRLQKENNFVILDVRPEAEFKEAHPPGAINVQIYRLIKEWTAWDIARRAAFA 152
           RSV+ KEALRLQ+ENNFVILDVRPEAEFKEAHPPGAINVQIYRLIKEWTAWDIARRAAFA
Sbjct: 88  RSVDVKEALRLQQENNFVILDVRPEAEFKEAHPPGAINVQIYRLIKEWTAWDIARRAAFA 147

Query: 153 FFGIFSGTEENPEFLQSVESQLDKDAKIIVACATGGTMKPSQNLPEGQQSRSLIAAYLLV 212
           FFGIFSGTEENPEFLQ V+S++DK+AKIIVAC++GGTMKPSQNLPEGQQSRSLIAAYLLV
Sbjct: 148 FFGIFSGTEENPEFLQIVDSKIDKNAKIIVACSSGGTMKPSQNLPEGQQSRSLIAAYLLV 207

Query: 213 LNGYKNVYHLEGGLYKWFKEELPEVSEE 240
           LNGY NV++LEGGLY WFKE LP VSEE
Sbjct: 208 LNGYTNVFYLEGGLYTWFKEGLPSVSEE 235

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357464055|ref|XP_003602309.1| Senescence-associated protein DIN1 [Medicago truncatula] gi|355491357|gb|AES72560.1| Senescence-associated protein DIN1 [Medicago truncatula]

 Score =  331 bits (849), Expect = 2e-88,   Method: Compositional matrix adjust.
 Identities = 163/231 (70%), Positives = 188/231 (81%), Gaps = 17/231 (7%)

Query: 26  LILAPKTNQDTTICCLTVRSFTFSRRRLSSQSVPRGLIIQNAATKPAKSPAEEDWKTKRE 85
           L+ + +  +D    C+ VRS+  + ++ S  +  RG+ +Q+AATKPAKSPAEE+WK KRE
Sbjct: 19  LVPSLEGTRDQNSWCVRVRSYKPTSQK-SQLNFARGITVQSAATKPAKSPAEEEWKVKRE 77

Query: 86  LLLQKRVR----------------SVEAKEALRLQKENNFVILDVRPEAEFKEAHPPGAI 129
           LLLQKRV+                SVE KEALRLQKENNFVILDVRPEAEFKE HPP AI
Sbjct: 78  LLLQKRVKLYLSIICAPHTLLNVKSVEPKEALRLQKENNFVILDVRPEAEFKEGHPPDAI 137

Query: 130 NVQIYRLIKEWTAWDIARRAAFAFFGIFSGTEENPEFLQSVESQLDKDAKIIVACATGGT 189
           NVQ+YRLIKEWTAWDIARRAAFAFFGIFSGTEENPEF++SV  QLDK+AKIIVAC+ GGT
Sbjct: 138 NVQVYRLIKEWTAWDIARRAAFAFFGIFSGTEENPEFIKSVGEQLDKNAKIIVACSAGGT 197

Query: 190 MKPSQNLPEGQQSRSLIAAYLLVLNGYKNVYHLEGGLYKWFKEELPEVSEE 240
           MKP+QNLP+GQQSRSLIAAYLLVLNGY NV+HLEGGLYKWFKE+LP V+EE
Sbjct: 198 MKPTQNLPQGQQSRSLIAAYLLVLNGYNNVFHLEGGLYKWFKEDLPAVAEE 248

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356509206|ref|XP_003523342.1| PREDICTED: uncharacterized protein LOC100797443 [Glycine max]

 Score =  330 bits (847), Expect = 2e-88,   Method: Compositional matrix adjust.
 Identities = 177/240 (73%), Positives = 199/240 (82%), Gaps = 6/240 (2%)

Query: 1   MAAITSVSQLHSSLSSLYPNYRSSPLILAPKTNQDTTICCLTVRSFTFSRRRLSSQSVPR 60
           MAA TS+   +SS SSL        L+ + +  +D       VRS+  + +    Q++ R
Sbjct: 1   MAAFTSIVVQYSSTSSL------QSLVPSLEATRDHNSWWGRVRSYRSTGKNSLQQNITR 54

Query: 61  GLIIQNAATKPAKSPAEEDWKTKRELLLQKRVRSVEAKEALRLQKENNFVILDVRPEAEF 120
           GL IQNAATKPAKSPAEEDWK KRE LL+KRVRSV+AKEA RLQKENNFVILDVRPEAEF
Sbjct: 55  GLTIQNAATKPAKSPAEEDWKVKREYLLEKRVRSVDAKEAFRLQKENNFVILDVRPEAEF 114

Query: 121 KEAHPPGAINVQIYRLIKEWTAWDIARRAAFAFFGIFSGTEENPEFLQSVESQLDKDAKI 180
           KEAHPP AINVQIYRLIKEWTAWDIARRAAFAFFGIF+GTEENPEF+QSVE++LDK+AKI
Sbjct: 115 KEAHPPDAINVQIYRLIKEWTAWDIARRAAFAFFGIFAGTEENPEFIQSVEAKLDKNAKI 174

Query: 181 IVACATGGTMKPSQNLPEGQQSRSLIAAYLLVLNGYKNVYHLEGGLYKWFKEELPEVSEE 240
           IVAC+ GGTMKPSQNLPEGQQSRSLIAAYLLVL+GY NV+HLEGGLY WFKE+LP VSEE
Sbjct: 175 IVACSAGGTMKPSQNLPEGQQSRSLIAAYLLVLDGYTNVFHLEGGLYSWFKEDLPSVSEE 234

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	240
TAIR|locus:2137792	224	AT4G27700 "AT4G27700" [Arabido	0.745	0.799	0.733	8.2e-67
UNIPROTKB|Q3AEL0	126	CHY_0566 "Rhodanese-like domai	0.191	0.365	0.412	5e-09
TIGR_CMR|CHY_0566	126	CHY_0566 "rhodanese-like domai	0.191	0.365	0.412	5e-09
TAIR|locus:2156937	120	STR16 "AT5G66040" [Arabidopsis	0.266	0.533	0.333	1.6e-07
UNIPROTKB|Q74F14	102	GSU0795 "Rhodanese homology do	0.179	0.421	0.340	1.8e-07
TIGR_CMR|GSU_0795	102	GSU_0795 "rhodanese-like domai	0.179	0.421	0.340	1.8e-07
TAIR|locus:2097628	214	AT3G08920 "AT3G08920" [Arabido	0.562	0.630	0.292	2.3e-07
UNIPROTKB|Q3Z6P8	144	DET1392 "Sulfurtransferase" [D	0.179	0.298	0.382	1.5e-06
TIGR_CMR|DET_1392	144	DET_1392 "rhodanese-like domai	0.179	0.298	0.382	1.5e-06
TAIR|locus:2059999	234	AT2G42220 "AT2G42220" [Arabido	0.425	0.435	0.267	3.6e-05

TAIR|locus:2137792 AT4G27700 "AT4G27700" [Arabidopsis thaliana (taxid:3702)]

 Score = 679 (244.1 bits), Expect = 8.2e-67, P = 8.2e-67
 Identities = 132/180 (73%), Positives = 149/180 (82%)

Query:    62 LIIQNAATKPAKSPAEEDWKTKRELLLQKRVRSVEAKEALRLQKENNFVILDVRPEAEFK 121
             L IQ  +TKPAK  AE DW+ KRELLL+KRVRSV+ KEA RLQKENNFVILDVRPEAE+K
Sbjct:    44 LKIQCTSTKPAKPAAEVDWRQKRELLLEKRVRSVDVKEAQRLQKENNFVILDVRPEAEYK 103

Query:   122 EAHPPGAINVQIYRLIKEWTAWDXXXXXXXXXXXXXSGTEENPEFLQSVESQLDKDAKII 181
               HPPGAINV++YRLI+EWTAWD             SGTEENPEF+QSVE++LDK+AKII
Sbjct:   104 AGHPPGAINVEMYRLIREWTAWDIARRLGFAFFGIFSGTEENPEFIQSVEAKLDKEAKII 163

Query:   182 VACATGGTMKPSQNLPEGQQSRSLIAAYLLVLNGYKNVYHLEGGLYKWFKEELP-EVSEE 240
             VAC++ GTMKP+QNLPEGQQSRSLIAAYLLVLNGYKNV+HLEGG+Y W KE LP E  EE
Sbjct:   164 VACSSAGTMKPTQNLPEGQQSRSLIAAYLLVLNGYKNVFHLEGGIYTWGKEGLPVETIEE 223

GO:0003674 "molecular_function" evidence=ND

GO:0007568 "aging" evidence=ISS

GO:0009507 "chloroplast" evidence=ISM;IDA

GO:0009535 "chloroplast thylakoid membrane" evidence=IDA

GO:0009534 "chloroplast thylakoid" evidence=IDA

GO:0009941 "chloroplast envelope" evidence=IDA

GO:0000023 "maltose metabolic process" evidence=RCA

GO:0006098 "pentose-phosphate shunt" evidence=RCA

GO:0019252 "starch biosynthetic process" evidence=RCA

GO:0043085 "positive regulation of catalytic activity" evidence=RCA

UNIPROTKB|Q3AEL0 CHY_0566 "Rhodanese-like domain protein" [Carboxydothermus hydrogenoformans Z-2901 (taxid:246194)]

 Score = 91 (37.1 bits), Expect = 5.0e-09, Sum P(2) = 5.0e-09
 Identities = 26/63 (41%), Positives = 34/63 (53%)

Query:   170 VESQL---DKDAKIIVACATGGTMKPSQNLPEGQQSRSLIAAYLLVLNGYKNVYHLEGGL 226
             VE QL   DK+ +I+V C TG              SRS   A +LV  GYK+VY+L+GG+
Sbjct:    72 VEQQLPNIDKEQEILVVCETG--------------SRSASIAQMLVSKGYKHVYNLKGGI 117

Query:   227 YKW 229
               W
Sbjct:   118 ANW 120

GO:0003674 "molecular_function" evidence=ND

GO:0008150 "biological_process" evidence=ND

TIGR_CMR|CHY_0566 CHY_0566 "rhodanese-like domain protein" [Carboxydothermus hydrogenoformans Z-2901 (taxid:246194)]

 Score = 91 (37.1 bits), Expect = 5.0e-09, Sum P(2) = 5.0e-09
 Identities = 26/63 (41%), Positives = 34/63 (53%)

Query:   170 VESQL---DKDAKIIVACATGGTMKPSQNLPEGQQSRSLIAAYLLVLNGYKNVYHLEGGL 226
             VE QL   DK+ +I+V C TG              SRS   A +LV  GYK+VY+L+GG+
Sbjct:    72 VEQQLPNIDKEQEILVVCETG--------------SRSASIAQMLVSKGYKHVYNLKGGI 117

Query:   227 YKW 229
               W
Sbjct:   118 ANW 120

GO:0003674 "molecular_function" evidence=ND

GO:0008150 "biological_process" evidence=ND

TAIR|locus:2156937 STR16 "AT5G66040" [Arabidopsis thaliana (taxid:3702)]

 Score = 87 (35.7 bits), Expect = 1.6e-07, Sum P(2) = 1.6e-07
 Identities = 26/78 (33%), Positives = 35/78 (44%)

Query:   158 SGTEENPEFLQSVESQLDKDAKIIVACATGGTMKPSQNLPEGQQSRSLIAAYLLVLNGYK 217
             SG  +NP+FL+ V S   +   IIV C +GG              RS+ A   L+  G+ 
Sbjct:    54 SGMSKNPDFLEQVSSHFGQSDNIIVGCQSGG--------------RSIKATTDLLHAGFT 99

Query:   218 NVYHLEGGLYKWFKEELP 235
              V  + GG   W K  LP
Sbjct:   100 GVKDIVGGYSAWAKNGLP 117

GO:0007568 "aging" evidence=ISS

GO:0009507 "chloroplast" evidence=ISM;IDA

GO:0004792 "thiosulfate sulfurtransferase activity" evidence=IDA

GO:0006569 "tryptophan catabolic process" evidence=RCA

GO:0009684 "indoleacetic acid biosynthetic process" evidence=RCA

UNIPROTKB|Q74F14 GSU0795 "Rhodanese homology domain superfamily protein" [Geobacter sulfurreducens PCA (taxid:243231)]

 Score = 77 (32.2 bits), Expect = 1.8e-07, Sum P(2) = 1.8e-07
 Identities = 15/44 (34%), Positives = 27/44 (61%)

Query:    95 VEAKEALRLQKENNF-VILDVRPEAEFKEAHPPGAINVQIYRLI 137
             + + E L+ +K NN   ++DVR   EFK  H PGA++   ++++
Sbjct:     1 MRSNELLKRRKANNPPTVIDVRTGFEFKAGHVPGAVHAPAWKIL 44

GO:0003674 "molecular_function" evidence=ND

GO:0008150 "biological_process" evidence=ND

TIGR_CMR|GSU_0795 GSU_0795 "rhodanese-like domain protein" [Geobacter sulfurreducens PCA (taxid:243231)]

 Score = 77 (32.2 bits), Expect = 1.8e-07, Sum P(2) = 1.8e-07
 Identities = 15/44 (34%), Positives = 27/44 (61%)

Query:    95 VEAKEALRLQKENNF-VILDVRPEAEFKEAHPPGAINVQIYRLI 137
             + + E L+ +K NN   ++DVR   EFK  H PGA++   ++++
Sbjct:     1 MRSNELLKRRKANNPPTVIDVRTGFEFKAGHVPGAVHAPAWKIL 44

GO:0003674 "molecular_function" evidence=ND

GO:0008150 "biological_process" evidence=ND

TAIR|locus:2097628 AT3G08920 "AT3G08920" [Arabidopsis thaliana (taxid:3702)]

 Score = 131 (51.2 bits), Expect = 2.3e-07, P = 2.3e-07
 Identities = 48/164 (29%), Positives = 78/164 (47%)

Query:    84 RELLLQKRVRSVEAKEALRLQKENNFVILDVRPEAEFKEAHPPGAINVQIY--------- 134
             +EL+L  +VR+VE KEA  +     +++LDVRP  E ++A   G+++V ++         
Sbjct:    37 KELILSGKVRAVEPKEANAVVASEGYILLDVRPAWEREKARVKGSLHVPLFVEDPDNGPI 96

Query:   135 RLIKEWTAWDXXXXXXXXXXXXXSGTEENPEF-LQSVESQLDKDAKIIVACATGGTMKPS 193
              L+K+W                   T  N EF L+ VE+  DK++K++V C         
Sbjct:    97 TLLKKWIHLGYIGLWTGQRF-----TMINDEFALRVVEAVPDKESKVLVVC--------- 142

Query:   194 QNLPEGQQSRSLIAAYLLVLNGYKNVYHLEGGLYKWFKEELPEV 237
                  G+  RSL A   L   GYK++  L GG  +  + + PE+
Sbjct:   143 -----GEGLRSLAAVSKLHGEGYKSLGWLTGGFNRVSEGDFPEI 181

GO:0003674 "molecular_function" evidence=ND

GO:0008150 "biological_process" evidence=ND

GO:0009507 "chloroplast" evidence=ISM;IDA

GO:0009534 "chloroplast thylakoid" evidence=IDA

GO:0009941 "chloroplast envelope" evidence=IDA

UNIPROTKB|Q3Z6P8 DET1392 "Sulfurtransferase" [Dehalococcoides ethenogenes 195 (taxid:243164)]

 Score = 84 (34.6 bits), Expect = 1.5e-06, Sum P(2) = 1.5e-06
 Identities = 18/47 (38%), Positives = 28/47 (59%)

Query:    92 VRSVEAKEALRLQKEN----NFVILDVRPEAEFKEAHPPGAINVQIY 134
             V+++   EA  L   N    +F+ILDVR  +E+ + H PGA+N+  Y
Sbjct:    38 VQNISVAEAKALIDRNAVSADFIILDVRTPSEYAQGHIPGAVNLDYY 84

GO:0003674 "molecular_function" evidence=ND

GO:0008150 "biological_process" evidence=ND

TIGR_CMR|DET_1392 DET_1392 "rhodanese-like domain protein" [Dehalococcoides ethenogenes 195 (taxid:243164)]

 Score = 84 (34.6 bits), Expect = 1.5e-06, Sum P(2) = 1.5e-06
 Identities = 18/47 (38%), Positives = 28/47 (59%)

Query:    92 VRSVEAKEALRLQKEN----NFVILDVRPEAEFKEAHPPGAINVQIY 134
             V+++   EA  L   N    +F+ILDVR  +E+ + H PGA+N+  Y
Sbjct:    38 VQNISVAEAKALIDRNAVSADFIILDVRTPSEYAQGHIPGAVNLDYY 84

GO:0003674 "molecular_function" evidence=ND

GO:0008150 "biological_process" evidence=ND

TAIR|locus:2059999 AT2G42220 "AT2G42220" [Arabidopsis thaliana (taxid:3702)]

 Score = 116 (45.9 bits), Expect = 3.6e-05, P = 3.6e-05
 Identities = 30/112 (26%), Positives = 56/112 (50%)

Query:    83 KRELLLQKRVRSVEAKEALRLQKENNFVILDVRPEAEFKEAHPPGAINVQIYRLIKEWTA 142
             +R L +   ++ V A+EA +L  E  + ++DVR + +F+ AH     ++ ++ +  E   
Sbjct:    40 RRSLRIAAELKFVNAEEAKQLIAEEGYSVVDVRDKTQFERAHIKSCSHIPLF-IYNEDN- 97

Query:   143 WDXXXXXXXXXXXXXSG-------TEENPEFLQSVESQLDKDAKIIVACATG 187
              D             SG       T+ NPEFL+SV ++  +D+K+++ C  G
Sbjct:    98 -DIGTIIKRTVHNNFSGLFFGLPFTKVNPEFLKSVRNEFSQDSKLLLVCQEG 148

GO:0003674 "molecular_function" evidence=ND

GO:0008150 "biological_process" evidence=ND

GO:0009507 "chloroplast" evidence=ISM;IDA

GO:0009535 "chloroplast thylakoid membrane" evidence=IDA

GO:0009534 "chloroplast thylakoid" evidence=IDA

GO:0010103 "stomatal complex morphogenesis" evidence=RCA

GO:0019344 "cysteine biosynthetic process" evidence=RCA

GO:0019684 "photosynthesis, light reaction" evidence=RCA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q94A65	STR14_ARATH	No assigned EC number	0.6785	0.9	0.9642	yes	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

Prediction Level	EC number	Confidence of Prediction
4th Layer	2.8.1.1	LOW CONFIDENCE prediction!
3rd Layer	2.8.1	0.691

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input: estExt_fgenesh4_pg.C_LG_XV0080 hypothetical protein (239 aa) (Populus trichocarpa)

Predicted Functional Partners:

Sorry, there are no predicted associations at the current settings.

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	240
cd00158	89	cd00158, RHOD, Rhodanese Homology Domain (RHOD); a	5e-23
smart00450	100	smart00450, RHOD, Rhodanese Homology Domain	2e-21
pfam00581	106	pfam00581, Rhodanese, Rhodanese-like domain	4e-20
COG0607	110	COG0607, PspE, Rhodanese-related sulfurtransferase	7e-18
cd01522	117	cd01522, RHOD_1, Member of the Rhodanese Homology	2e-12
cd01524	90	cd01524, RHOD_Pyr_redox, Member of the Rhodanese H	2e-08
PRK00142	314	PRK00142, PRK00142, putative rhodanese-related sul	2e-08
cd01518	101	cd01518, RHOD_YceA, Member of the Rhodanese Homolo	2e-08
COG1054	308	COG1054, COG1054, Predicted sulfurtransferase [Gen	4e-08
PRK08762	376	PRK08762, PRK08762, molybdopterin biosynthesis pro	1e-07
cd01444	96	cd01444, GlpE_ST, GlpE sulfurtransferase (ST) and	2e-07
cd01447	103	cd01447, Polysulfide_ST, Polysulfide-sulfurtransfe	3e-07
TIGR03167	311	TIGR03167, tRNA_sel_U_synt, tRNA 2-selenouridine s	2e-05
cd01519	106	cd01519, RHOD_HSP67B2, Member of the Rhodanese Hom	2e-05
cd01523	100	cd01523, RHOD_Lact_B, Member of the Rhodanese Homo	3e-05
cd01528	101	cd01528, RHOD_2, Member of the Rhodanese Homology	3e-05
cd01449	118	cd01449, TST_Repeat_2, Thiosulfate sulfurtransfera	3e-05
cd01446	132	cd01446, DSP_MapKP, N-terminal regulatory rhodanes	8e-05
cd01526	122	cd01526, RHOD_ThiF, Member of the Rhodanese Homolo	9e-05
cd01448	122	cd01448, TST_Repeat_1, Thiosulfate sulfurtransfera	1e-04
PRK00162	108	PRK00162, glpE, thiosulfate sulfurtransferase; Val	2e-04
cd01520	128	cd01520, RHOD_YbbB, Member of the Rhodanese Homolo	4e-04
PLN02160	136	PLN02160, PLN02160, thiosulfate sulfurtransferase	7e-04
COG2897	285	COG2897, SseA, Rhodanese-related sulfurtransferase	0.001
COG2897	285	COG2897, SseA, Rhodanese-related sulfurtransferase	0.001
cd01521	110	cd01521, RHOD_PspE2, Member of the Rhodanese Homol	0.002

>gnl|CDD|238089 cd00158, RHOD, Rhodanese Homology Domain (RHOD); an alpha beta fold domain found duplicated in the rhodanese protein

 Score = 88.9 bits (221), Expect = 5e-23
 Identities = 38/131 (29%), Positives = 50/131 (38%), Gaps = 43/131 (32%)

Query: 99  EALRLQKENNFVILDVRPEAEFKEAHPPGAINVQIYRLIKEWTAWDIARRAAFAFFGIFS 158
           E   L  + + V+LDVR   E+   H PGAIN+ +  L +                    
Sbjct: 1   ELKELLDDEDAVLLDVREPEEYAAGHIPGAINIPLSELEERA------------------ 42

Query: 159 GTEENPEFLQSVESQLDKDAKIIVACATGGTMKPSQNLPEGQQSRSLIAAYLLVLNGYKN 218
                         +LDKD  I+V C +G               RS  AA LL   G  N
Sbjct: 43  -----------ALLELDKDKPIVVYCRSGN--------------RSARAAKLLRKAGGTN 77

Query: 219 VYHLEGGLYKW 229
           VY+LEGG+  W
Sbjct: 78  VYNLEGGMLAW 88

The cysteine containing enzymatically active version of the domain is also found in the Cdc25 class of protein phosphatases and a variety of proteins such as sulfide dehydrogenases and certain stress proteins such as senesence specific protein 1 in plants, PspE and GlpE in bacteria and cyanide and arsenate resistance proteins. Inactive versions (no active site cysteine) are also seen in dual specificity phosphatases, ubiquitin hydrolases from yeast and in sulfuryltransferases, where they are believed to play a regulatory role in multidomain proteins. Length = 89

>gnl|CDD|197731 smart00450, RHOD, Rhodanese Homology Domain

 Score = 85.2 bits (211), Expect = 2e-21
 Identities = 37/131 (28%), Positives = 52/131 (39%), Gaps = 31/131 (23%)

Query: 105 KENNFVILDVRPEAEFKEAHPPGAINVQIYRLIKEWTAWDIARRAAFAFFGIFSGTEENP 164
            +   V+LDVR   E++  H PGA+N+ +  L+      DI                   
Sbjct: 1   NDEKVVLLDVRSPEEYEGGHIPGAVNIPLSELLDRRGELDIL-----------------E 43

Query: 165 EFLQSVESQLDKDAKIIVACATGGTMKPSQNLPEGQQSRSLIAAYLLVLNGYKNVYHLEG 224
                    LDKD  ++V C +G               RS  AA+LL   G+KNVY L+G
Sbjct: 44  FEELLKRLGLDKDKPVVVYCRSGN--------------RSAKAAWLLRELGFKNVYLLDG 89

Query: 225 GLYKWFKEELP 235
           G  +W     P
Sbjct: 90  GYKEWSAAGPP 100

An alpha beta fold found duplicated in the Rhodanese protein. The the Cysteine containing enzymatically active version of the domain is also found in the CDC25 class of protein phosphatases and a variety of proteins such as sulfide dehydrogenases and stress proteins such as Senesence specific protein 1 in plants, PspE and GlpE in bacteria and cyanide and arsenate resistance proteins. Inactive versions with a loss of the cysteine are also seen in Dual specificity phosphatases, ubiquitin hydrolases from yeast and in sulfuryltransferases. These are likely to play a role in protein interactions. Length = 100

>gnl|CDD|216005 pfam00581, Rhodanese, Rhodanese-like domain

 Score = 81.8 bits (202), Expect = 4e-20
 Identities = 38/137 (27%), Positives = 62/137 (45%), Gaps = 31/137 (22%)

Query: 96  EAKEALRLQKENNFVILDVRPEAEFKEAHPPGAINVQIYRLIKEWTAWDIARRAAFAFFG 155
            A+E   L + ++ V++DVR   E+ + H PGA+N+         +   +          
Sbjct: 1   TAEELKALLEADDVVLIDVRSPEEYAKGHIPGAVNI-------PLSLPSL---------- 43

Query: 156 IFSGTEENPEFLQSVESQLDKDAKIIVACATGGTMKPSQNLPEGQQSRSLIAAYLLVLNG 215
                ++    L+ +  +LDKD  I+V CA+G             Q+ +L+ A +L   G
Sbjct: 44  -----DKLESELEELGKKLDKDKTIVVYCASG---------NRSGQAAALLLALILKALG 89

Query: 216 YKNVYHLEGGLYKWFKE 232
           YKNVY L+GG   W  E
Sbjct: 90  YKNVYVLDGGFEAWKAE 106

Rhodanese has an internal duplication. This Pfam represents a single copy of this duplicated domain. The domain is found as a single copy in other proteins, including phosphatases and ubiquitin C-terminal hydrolases. Length = 106

>gnl|CDD|223680 COG0607, PspE, Rhodanese-related sulfurtransferase [Inorganic ion transport and metabolism]

 Score = 76.1 bits (187), Expect = 7e-18
 Identities = 39/150 (26%), Positives = 54/150 (36%), Gaps = 42/150 (28%)

Query: 91  RVRSVEAKEALRLQKENNFVILDVRPEAEFKEAHPPGAINVQIYRLIKEWTAWDIARRAA 150
           R+ ++   EA  L    + V+LDVR   E++  H PGA        +K            
Sbjct: 3   RLETISEDEAALLLAGEDAVLLDVREPEEYERGHIPGAAINIPLSELKAA---------- 52

Query: 151 FAFFGIFSGTEENPEFLQSVESQLDKDAKIIVACATGGTMKPSQNLPEGQQSRSLIAAYL 210
                                 +L  D  I+V CA+G               RS  AA  
Sbjct: 53  ------------------ENLLELPDDDPIVVYCASGV--------------RSAAAAAA 80

Query: 211 LVLNGYKNVYHLEGGLYKWFKEELPEVSEE 240
           L L G+ NVY+L+GG+  W    LP V   
Sbjct: 81  LKLAGFTNVYNLDGGIDAWKGAGLPLVRGY 110

Length = 110

>gnl|CDD|238780 cd01522, RHOD_1, Member of the Rhodanese Homology Domain superfamily, subgroup 1

 Score = 62.0 bits (151), Expect = 2e-12
 Identities = 36/125 (28%), Positives = 54/125 (43%), Gaps = 37/125 (29%)

Query: 102 RLQKENNFVILDVRPEAEFKE-AHPPGAINVQIYRLIKEWTAWDIARRAAFAFFGIFSGT 160
            LQ +   V++DVR EAE+K     P A++V          AW +           +   
Sbjct: 9   LLQADPQAVLVDVRTEAEWKFVGGVPDAVHV----------AWQV-----------YPDM 47

Query: 161 EENPEFLQSVESQLDKDAKIIVACATGGTMKPSQNLPEGQQSRSLIAAYLLVLNGYKNVY 220
           E NP FL  +E ++ KD  +++ C +G               RS+ AA      G+ NVY
Sbjct: 48  EINPNFLAELEEKVGKDRPVLLLCRSGN--------------RSIAAAEAAAQAGFTNVY 93

Query: 221 H-LEG 224
           + LEG
Sbjct: 94  NVLEG 98

This CD includes the putative rhodanese-related sulfurtransferases of several uncharacterized proteins. Length = 117

>gnl|CDD|238782 cd01524, RHOD_Pyr_redox, Member of the Rhodanese Homology Domain superfamily

 Score = 50.3 bits (121), Expect = 2e-08
 Identities = 35/130 (26%), Positives = 49/130 (37%), Gaps = 48/130 (36%)

Query: 101 LRLQKENNFVILDVRPEAEFKEAHPPGAINVQIYRLIKEWTAWDIARRAAFAFFGIFSGT 160
           L   + +   ++DVR   EF++ H  GAIN+ +  L           R            
Sbjct: 6   LDNYRADGVTLIDVRTPQEFEKGHIKGAINIPLDEL-----------RDRLN-------- 46

Query: 161 EENPEFLQSVESQLDKDAKIIVACATGGTMKPSQNLPEGQQSRSLIAAYLLVLNGYKNVY 220
                       +L KD +IIV CA G               R  IAA +L  NG+K V 
Sbjct: 47  ------------ELPKDKEIIVYCAVG--------------LRGYIAARILTQNGFK-VK 79

Query: 221 HLEGG--LYK 228
           +L+GG   Y 
Sbjct: 80  NLDGGYKTYS 89

Included in this CD are the Lactococcus lactis NADH oxidase, Bacillus cereus NADH dehydrogenase, and Bacteroides thetaiotaomicron pyridine nucleotide-disulphide oxidoreductase, and similar rhodanese-like domains found C-terminal of the pyridine nucleotide-disulphide oxidoreductase (Pyr-redox) domain and the Pyr-redox dimerization domain. Length = 90

>gnl|CDD|234663 PRK00142, PRK00142, putative rhodanese-related sulfurtransferase; Provisional

 Score = 53.3 bits (129), Expect = 2e-08
 Identities = 35/142 (24%), Positives = 55/142 (38%), Gaps = 47/142 (33%)

Query: 95  VEAKEALRLQKENNFVILDVRPEAEFKEAHPPGAINVQI--YRLIKEWTAWDIARRAAFA 152
           ++ KE   L  + + V +D+R + E++  H   AI   I  +R                 
Sbjct: 114 LKPKEVNELLDDPDVVFIDMRNDYEYEIGHFENAIEPDIETFR----------------- 156

Query: 153 FFGIFSGTEENPEFLQSVESQLD--KDAKIIVACATGGTMKPSQNLPEGQQSRSLIAAYL 210
                       EF   VE  LD  KD K+++ C TGG              R   A+  
Sbjct: 157 ------------EFPPWVEENLDPLKDKKVVMYC-TGGI-------------RCEKASAW 190

Query: 211 LVLNGYKNVYHLEGGLYKWFKE 232
           +   G+K VY LEGG+  + ++
Sbjct: 191 MKHEGFKEVYQLEGGIITYGED 212

Length = 314

>gnl|CDD|238776 cd01518, RHOD_YceA, Member of the Rhodanese Homology Domain superfamily

 Score = 50.3 bits (121), Expect = 2e-08
 Identities = 36/139 (25%), Positives = 55/139 (39%), Gaps = 43/139 (30%)

Query: 95  VEAKEALRLQKENNFVILDVRPEAEFKEAHPPGAINVQIYRLIKEWTAWDIARRAAFAFF 154
           +   E   L ++   V+LDVR + E+   H  GA+N  +          D  R       
Sbjct: 4   LSPAEWNELLEDPEVVLLDVRNDYEYDIGHFKGAVNPDV----------DTFR------- 46

Query: 155 GIFSGTEENPEFLQSVESQLD--KDAKIIVACATGGTMKPSQNLPEGQQSRSLIAAYLLV 212
                     EF   ++  LD  K  K+++ C TGG              R   A+  L 
Sbjct: 47  ----------EFPFWLDENLDLLKGKKVLMYC-TGGI-------------RCEKASAYLK 82

Query: 213 LNGYKNVYHLEGGLYKWFK 231
             G+KNVY L+GG+ K+ +
Sbjct: 83  ERGFKNVYQLKGGILKYLE 101

This CD includes Escherichia coli YceA, Bacillus subtilis YbfQ, and similar uncharacterized proteins. Length = 101

>gnl|CDD|223982 COG1054, COG1054, Predicted sulfurtransferase [General function prediction only]

 Score = 52.3 bits (126), Expect = 4e-08
 Identities = 37/140 (26%), Positives = 55/140 (39%), Gaps = 43/140 (30%)

Query: 95  VEAKEALRLQKENNFVILDVRPEAEFKEAHPPGAINVQIYRLIKEWTAWDIARRAAFAFF 154
           +  K+   L  + + V++D R + E    H  GA+   I                 F   
Sbjct: 115 LSPKDWNELLSDPDVVVIDTRNDYEVAIGHFEGAVEPDI---------------ETFR-- 157

Query: 155 GIFSGTEENPEFLQSVESQLD--KDAKIIVACATGGTMKPSQNLPEGQQSRSLIAAYLLV 212
                     EF   VE  LD  KD K+++ C TGG              R   A+  + 
Sbjct: 158 ----------EFPAWVEENLDLLKDKKVVMYC-TGGI-------------RCEKASAWMK 193

Query: 213 LNGYKNVYHLEGGLYKWFKE 232
            NG+K VYHLEGG+ K+ ++
Sbjct: 194 ENGFKEVYHLEGGILKYLED 213

Length = 308

>gnl|CDD|236337 PRK08762, PRK08762, molybdopterin biosynthesis protein MoeB; Validated

 Score = 51.2 bits (123), Expect = 1e-07
 Identities = 35/147 (23%), Positives = 50/147 (34%), Gaps = 48/147 (32%)

Query: 91  RVRSVEAKEALRLQKENNFVILDVRPEAEFKEAHPPGAINVQIYRLIKEWTAWDIARRAA 150
            +R +   EA         V++DVR   E       GA+               I R   
Sbjct: 1   SIREISPAEARARAA-QGAVLIDVREAHERASGQAEGALR--------------IPR--- 42

Query: 151 FAFFGIFSGTEENPEFLQS-VESQL-DKDAKIIVACATGGTMKPSQNLPEGQQSRSLIAA 208
                          FL+  +E+ L D+D +I++ CA+G              +RS  AA
Sbjct: 43  --------------GFLELRIETHLPDRDREIVLICASG--------------TRSAHAA 74

Query: 209 YLLVLNGYKNVYHLEGGLYKWFKEELP 235
             L   GY  V  + GG   W    LP
Sbjct: 75  ATLRELGYTRVASVAGGFSAWKDAGLP 101

Length = 376

>gnl|CDD|238721 cd01444, GlpE_ST, GlpE sulfurtransferase (ST) and homologs are members of the Rhodanese Homology Domain superfamily

 Score = 47.3 bits (113), Expect = 2e-07
 Identities = 31/134 (23%), Positives = 43/134 (32%), Gaps = 48/134 (35%)

Query: 99  EALRL-QKENNFVILDVRPEAEF--KEAHPPGAINVQIYRLIKEWTAWDIARRAAFAFFG 155
           E   L       V+LDVR  A +     H PGAI++                        
Sbjct: 6   ELAELLAAGEAPVLLDVRDPASYAALPDHIPGAIHL------------------------ 41

Query: 156 IFSGTEENPEFLQSVESQLDKDAKIIVACATGGTMKPSQNLPEGQQSRSLIAAYLLVLNG 215
                E++   L      LD+D  ++V C  G +   S  L          A  L    G
Sbjct: 42  ----DEDS---LDDWLGDLDRDRPVVVYCYHGNS---SAQL----------AQALRE-AG 80

Query: 216 YKNVYHLEGGLYKW 229
           + +V  L GG   W
Sbjct: 81  FTDVRSLAGGFEAW 94

Unlike other rhodanese sulfurtransferases, GlpE is a single domain protein but indications are that it functions as a dimer. The active site contains a catalytically active cysteine. Length = 96

>gnl|CDD|238724 cd01447, Polysulfide_ST, Polysulfide-sulfurtransferase - Rhodanese Homology Domain

 Score = 47.0 bits (112), Expect = 3e-07
 Identities = 30/137 (21%), Positives = 45/137 (32%), Gaps = 40/137 (29%)

Query: 95  VEAKEALRLQKENNFVILDVR--PEAEFKEAHPPGAINVQIYRLIKEWTAWDIARRAAFA 152
           +  ++A  L      +++DVR   E E +    PGA +                 R    
Sbjct: 1   LSPEDARALLGSPGVLLVDVRDPRELE-RTGMIPGAFHAP---------------RGMLE 44

Query: 153 FFGIFSGTEENPEFLQSVESQLDKDAKIIVACATGGTMKPSQNLPEGQQSRSLIAAYLLV 212
           F+         P F         +D   +  CA+G               RS +A   L 
Sbjct: 45  FWADPDSPYHKPAF--------AEDKPFVFYCASGW--------------RSALAGKTLQ 82

Query: 213 LNGYKNVYHLEGGLYKW 229
             G K VY++EGG   W
Sbjct: 83  DMGLKPVYNIEGGFKDW 99

This domain is believed to serve as a polysulfide binding and transferase domain in anaerobic gram-negative bacteria, functioning in oxidative phosphorylation with polysulfide-sulfur as a terminal electron acceptor. The active site contains the same conserved cysteine that is the catalytic residue in other Rhodanese Homology Domain proteins. Length = 103

>gnl|CDD|234132 TIGR03167, tRNA_sel_U_synt, tRNA 2-selenouridine synthase

 Score = 44.9 bits (107), Expect = 2e-05
 Identities = 36/143 (25%), Positives = 54/143 (37%), Gaps = 30/143 (20%)

Query: 107 NNFVILDVRPEAEFKEAHPPGAIN---------VQIYRLIKEWTAWDIARRAAFAFFGIF 157
               ++DVR  AEF E H PGAIN          ++  L K+      A +   A     
Sbjct: 1   AFDPLIDVRSPAEFAEGHLPGAINLPLLNDEERAEVGTLYKQVGP-FAAIKLGLALVS-- 57

Query: 158 SGTEENPEFLQSVESQLDKDAKIIVACATGGTMKPSQNLPEGQQSRSLIAAYLLVLNGYK 217
                    ++   +  D   + ++ C  GG              RS   A+LL   G+ 
Sbjct: 58  ---PNLAAHVEQWRAFADGPPQPLLYCWRGG-------------MRSGSLAWLLAQIGF- 100

Query: 218 NVYHLEGGLYKWFKEELPEVSEE 240
            V  LEGG YK ++  + +  EE
Sbjct: 101 RVPRLEGG-YKAYRRFVIDQLEE 122

The Escherichia coli YbbB protein was shown to encode a selenophosphate-dependent tRNA 2-selenouridine synthase, essential for modification of some tRNAs to replace a sulfur atom with selenium. This enzyme works with SelD, the selenium donor protein, which also acts in selenocysteine incorporation. Although the members of this protein family show a fairly deep split, sequences from both sides of the split are supported by co-occurence with, and often proximity to, the selD gene [Protein synthesis, tRNA and rRNA base modification]. Length = 311

>gnl|CDD|238777 cd01519, RHOD_HSP67B2, Member of the Rhodanese Homology Domain superfamily

 Score = 41.9 bits (99), Expect = 2e-05
 Identities = 31/122 (25%), Positives = 41/122 (33%), Gaps = 32/122 (26%)

Query: 108 NFVILDVRPEAEFKEAHPPGAINVQIYRLIKEWTAWDIARRAAFAFFGIFSGTEENPEFL 167
           N V++DVR   E K    PGAIN+ +  L       +      + F          P   
Sbjct: 15  NKVLIDVREPEELKTGKIPGAINIPLSSLPDALALSEEEFEKKYGF--------PKP--- 63

Query: 168 QSVESQLDKDAKIIVACATGGTMKPSQNLPEGQQSRSLIAAYLLVLNGYKNVYHLEGGLY 227
                   KD ++I  C  G               RS  AA L    GY+NV +  G   
Sbjct: 64  -------SKDKELIFYCKAGV--------------RSKAAAELARSLGYENVGNYPGSWL 102

Query: 228 KW 229
            W
Sbjct: 103 DW 104

This CD includes the heat shock protein 67B2 of Drosophila melanogaster and other similar proteins, many of which are uncharacterized. Length = 106

>gnl|CDD|238781 cd01523, RHOD_Lact_B, Member of the Rhodanese Homology Domain superfamily

 Score = 41.7 bits (98), Expect = 3e-05
 Identities = 28/119 (23%), Positives = 39/119 (32%), Gaps = 38/119 (31%)

Query: 111 ILDVRPEAEFKEAHPPGAINVQIYRLIKEWTAWDIARRAAFAFFGIFSGTEENPEFLQSV 170
           ILDVR E++++     G  N   +                   F      E        +
Sbjct: 18  ILDVRNESDYERWKIDGENNTPYFDPY----------------FDFLEIEE-------DI 54

Query: 171 ESQLDKDAKIIVACATGGTMKPSQNLPEGQQSRSLIAAYLLVLNGYKNVYHLEGGLYKW 229
             QL  D ++ V CA  G+              S   A LL   GY  V +L GG+  W
Sbjct: 55  LDQLPDDQEVTVICAKEGS--------------SQFVAELLAERGYD-VDYLAGGMKAW 98

This CD includes predicted proteins with rhodanese-like domains found N-terminal of the metallo-beta-lactamase domain. Length = 100

>gnl|CDD|238786 cd01528, RHOD_2, Member of the Rhodanese Homology Domain superfamily, subgroup 2

 Score = 41.6 bits (98), Expect = 3e-05
 Identities = 29/122 (23%), Positives = 47/122 (38%), Gaps = 42/122 (34%)

Query: 108 NFVILDVRPEAEFKEAHPPGAINVQIYRLIKEWTAWDIARRAAFAFFGIFSGTEENPEFL 167
             V++DVR   E + A  PG +++ +   I E                    ++E     
Sbjct: 17  EPVLIDVREPEELEIAFLPGFLHLPM-SEIPER-------------------SKELDS-- 54

Query: 168 QSVESQLDKDAKIIVACATGGTMKPSQNLPEGQQSRSLIAAYLLVLNGYKNVYHLEGGLY 227
                  + D  I+V C  GG              RS+  A  L+  G++NVY+L+GG+ 
Sbjct: 55  ------DNPDKDIVVLCHHGG--------------RSMQVAQWLLRQGFENVYNLQGGID 94

Query: 228 KW 229
            W
Sbjct: 95  AW 96

Subgroup 2 includes uncharacterized putative rhodanese-related domains. Length = 101

>gnl|CDD|238726 cd01449, TST_Repeat_2, Thiosulfate sulfurtransferase (TST), C-terminal, catalytic domain

 Score = 41.8 bits (99), Expect = 3e-05
 Identities = 33/148 (22%), Positives = 53/148 (35%), Gaps = 45/148 (30%)

Query: 95  VEAKEALRLQKENNFVILDVRPEAEF-----------KEAHPPGAINVQIYRLIKEWTAW 143
           V A+E L      +  ++D R    F           +  H PGA+N+    L+ E    
Sbjct: 1   VTAEEVLANLDSGDVQLVDARSPERFRGEVPEPRPGLRSGHIPGAVNIPWTSLLDE---- 56

Query: 144 DIARRAAFAFFGIFSGTEENPEFLQSV--ESQLDKDAKIIVACATGGTMKPSQNLPEGQQ 201
                          GT ++PE L+++     +  D  +IV C +G              
Sbjct: 57  --------------DGTFKSPEELRALFAALGITPDKPVIVYCGSG-------------- 88

Query: 202 SRSLIAAYLLVLNGYKNVYHLEGGLYKW 229
             + +    L L GYKNV   +G   +W
Sbjct: 89  VTACVLLLALELLGYKNVRLYDGSWSEW 116

TST contains 2 copies of the Rhodanese Homology Domain; this is the second repeat. Only the second repeat contains the catalytically active Cys residue. Length = 118

>gnl|CDD|238723 cd01446, DSP_MapKP, N-terminal regulatory rhodanese domain of dual specificity phosphatases (DSP), such as Mapk Phosphatase

 Score = 40.7 bits (96), Expect = 8e-05
 Identities = 28/129 (21%), Positives = 49/129 (37%), Gaps = 15/129 (11%)

Query: 108 NFVILDVRPEAEFKEAHPPGAINVQIYRLIKEWTAWDIARRAAFAFFGIFSGTEENPEFL 167
             ++LD RP  E+  +H  GA+NV    +++        RR             +     
Sbjct: 17  RLLLLDCRPFLEYSSSHIRGAVNVCCPTILR--------RRLQG-----GKILLQQLLSC 63

Query: 168 QSVESQLDKDAKIIVACATGGTMKPSQNLPEGQQSRSLIAAYLLVLNGYKNVYHLEGGLY 227
                +L +   + V      +    + L E   + S++   L  L    +VY L+GG +
Sbjct: 64  PEDRDRLRRGESLAVVVYDESSSDRER-LREDSTAESVLGKLLRKLQEGCSVYLLKGG-F 121

Query: 228 KWFKEELPE 236
           + F  E PE
Sbjct: 122 EQFSSEFPE 130

This domain is believed to determine substrate specificity by binding the substrate, such as ERK2, and activating the C-terminal catalytic domain by inducing a conformational change. This domain has homology to the Rhodanese Homology Domain. Length = 132

>gnl|CDD|238784 cd01526, RHOD_ThiF, Member of the Rhodanese Homology Domain superfamily

 Score = 40.8 bits (96), Expect = 9e-05
 Identities = 36/139 (25%), Positives = 47/139 (33%), Gaps = 36/139 (25%)

Query: 91  RVRSVEAKEALRLQKENNFVILDVRPEAEFKEAHPPGAINVQIYRLIKEWTAWDIARRAA 150
           RV   + K    LQ     V+LDVRP+  F+    P AIN+ +  L+          +AA
Sbjct: 9   RVSVKDYKN--ILQAGKKHVLLDVRPKVHFEICRLPEAINIPLSELL---------SKAA 57

Query: 151 FAFFGIFSGTEENPEFLQSVESQLDKDAKIIVACATGGTMKPSQNLPEGQQSRSLIAAYL 210
                     E             DKD+ I V C  G     SQ               L
Sbjct: 58  ----------ELKSLQEL--PLDNDKDSPIYVVCRRGND---SQ----------TAVRKL 92

Query: 211 LVLNGYKNVYHLEGGLYKW 229
             L   + V  + GGL  W
Sbjct: 93  KELGLERFVRDIIGGLKAW 111

This CD includes several putative molybdopterin synthase sulfurylases including the molybdenum cofactor biosynthetic protein (CnxF) of Aspergillus nidulans and the molybdenum cofactor synthesis protein 3 (MOCS3) of Homo sapiens. These rhodanese-like domains are found C-terminal of the ThiF and MoeZ_MoeB domains. Length = 122

>gnl|CDD|238725 cd01448, TST_Repeat_1, Thiosulfate sulfurtransferase (TST), N-terminal, inactive domain

 Score = 40.3 bits (95), Expect = 1e-04
 Identities = 32/146 (21%), Positives = 47/146 (32%), Gaps = 34/146 (23%)

Query: 95  VEAKEALRLQKENNFVILDVR-------PEAEFKEAHPPGAINVQIYRLIKEWTAWDIAR 147
           V          + +  ILD R          E+ E H PGA+              D   
Sbjct: 2   VSPDWLAEHLDDPDVRILDARWYLPDRDGRKEYLEGHIPGAVFF----------DLDEDL 51

Query: 148 RAAFAFFGIFSGTEENPEFLQSVESQ-LDKDAKIIVACATGGTMKPSQNLPEGQQSRSLI 206
                   +    E   EF + + S  +  D  ++V    GG             +R   
Sbjct: 52  DDKSPGPHMLPSPE---EFAELLGSLGISNDDTVVVY-DDGGGF---------FAAR--- 95

Query: 207 AAYLLVLNGYKNVYHLEGGLYKWFKE 232
           A + L   G++NV  L+GGL  W  E
Sbjct: 96  AWWTLRYFGHENVRVLDGGLQAWKAE 121

TST contains 2 copies of the Rhodanese Homology Domain; this is the 1st repeat, which does not contain the catalytically active Cys residue. The role of the 1st repeat is uncertain, but it is believed to be involved in protein interaction. Length = 122

>gnl|CDD|178908 PRK00162, glpE, thiosulfate sulfurtransferase; Validated

 Score = 39.2 bits (92), Expect = 2e-04
 Identities = 31/145 (21%), Positives = 49/145 (33%), Gaps = 47/145 (32%)

Query: 94  SVEAKEALRLQKENNFVILDVRPEAEFKEAHPPGAINVQIYRLIKEWTAWDIARRAAFAF 153
           +VE        +E   V++D+R    F   H PGA ++    L                 
Sbjct: 8   NVEQAHQKL--QEGGAVLVDIRDPQSFAMGHAPGAFHLTNDSL----------------- 48

Query: 154 FGIFSGTEENPEFLQSVESQLDKDAKIIVACATGGTMKPSQNLPEGQQSRSLIAAYLLVL 213
                       F++    Q D D  ++V C              G  S+   AA  L+ 
Sbjct: 49  ----------GAFMR----QADFDTPVMVMCY------------HGNSSQG--AAQYLLQ 80

Query: 214 NGYKNVYHLEGGLYKWFKEELPEVS 238
            G+  VY ++GG   W +    EV+
Sbjct: 81  QGFDVVYSIDGGFEAWRRTFPAEVA 105

Length = 108

>gnl|CDD|238778 cd01520, RHOD_YbbB, Member of the Rhodanese Homology Domain superfamily

 Score = 39.2 bits (92), Expect = 4e-04
 Identities = 41/155 (26%), Positives = 63/155 (40%), Gaps = 51/155 (32%)

Query: 97  AKEALRLQKENNFVILDVRPEAEFKEAHPPGAINVQIYRLIKEWTAWDIARRAAFAFFGI 156
             E L   ++ +  ++DVR   EF E H PGAIN+ +          D   RA       
Sbjct: 2   TAEDLLALRKADGPLIDVRSPKEFFEGHLPGAINLPLL---------DDEERALV----- 47

Query: 157 FSGT---EENPE-----------------FLQSVESQLDKDAKIIVACATGGTMKPSQNL 196
             GT   ++  E                   ++ E++L++D K+++ CA GG        
Sbjct: 48  --GTLYKQQGREAAIELGLELVSGKLKRILNEAWEARLERDPKLLIYCARGGM------- 98

Query: 197 PEGQQSRSLIAAYLLVLNGYKNVYHLEGGLYKWFK 231
                 RS   A+LL   G  +V  LEGG YK ++
Sbjct: 99  ------RSQSLAWLLESLGI-DVPLLEGG-YKAYR 125

This CD includes several putative ATP /GTP binding proteins including E. coli YbbB. Length = 128

>gnl|CDD|177819 PLN02160, PLN02160, thiosulfate sulfurtransferase

 Score = 38.1 bits (88), Expect = 7e-04
 Identities = 43/151 (28%), Positives = 59/151 (39%), Gaps = 32/151 (21%)

Query: 90  KRVRSVEAKEALRLQKENNFVILDVRPEAEFKEAHPPGAINVQIYRLIKEWTAWDIARRA 149
           + V SV+  +A  L +  +   LDVR + EF+  H   A  V I  ++            
Sbjct: 12  EEVVSVDVSQAKTLLQSGH-QYLDVRTQDEFRRGHCEAAKIVNIPYMLN----------- 59

Query: 150 AFAFFGIFSGTEENPEFLQSVESQLDKDAKIIVACATGGTMKPSQNLPEGQQSRSLIAAY 209
                    G  +N EFL+ V S L+    I+V C +G              +RSL A  
Sbjct: 60  ------TPQGRVKNQEFLEQVSSLLNPADDILVGCQSG--------------ARSLKATT 99

Query: 210 LLVLNGYKNVYHLEGGLYKWFKEELPEVSEE 240
            LV  GYK V +  GG   W     P   EE
Sbjct: 100 ELVAAGYKKVRNKGGGYLAWVDHSFPINQEE 130

Length = 136

>gnl|CDD|225450 COG2897, SseA, Rhodanese-related sulfurtransferase [Inorganic ion transport and metabolism]

 Score = 39.2 bits (92), Expect = 0.001
 Identities = 35/180 (19%), Positives = 54/180 (30%), Gaps = 51/180 (28%)

Query: 61  GLIIQNAATKPAKSPAEEDWKTKRELLLQKRVRSVEAKEALRLQKENNFVILDVRPEAEF 120
           GL ++    +P  +     +  K  +       ++E    L         ++D R    F
Sbjct: 133 GLPLETEPPEPPPTTFSAKYNVKAVVDATLVADALEVPAVL---------LIDARSPERF 183

Query: 121 --KEAHP--------PGAINVQIYRLIKEWTAW-DIARRAAFAFFGIFSGTEENPEFLQS 169
             KE  P        PGAIN+        WT   D            F   EE       
Sbjct: 184 RGKEPEPRDGKAGHIPGAINI-------PWTDLVDDGGL--------FKSPEEIARLYAD 228

Query: 170 VESQLDKDAKIIVACATGGTMKPSQNLPEGQQSRSLIAAYLLVLNGYKNVYHLEGGLYKW 229
               +D D ++IV C +G               R+ +    L   G  N    +G   +W
Sbjct: 229 A--GIDPDKEVIVYCGSG--------------VRASVTWLALAELGGPNNRLYDGSWSEW 272

Length = 285

>gnl|CDD|225450 COG2897, SseA, Rhodanese-related sulfurtransferase [Inorganic ion transport and metabolism]

 Score = 38.5 bits (90), Expect = 0.001
 Identities = 34/161 (21%), Positives = 48/161 (29%), Gaps = 48/161 (29%)

Query: 90  KRVRSVEAKEALRLQKENNFVILDVR-------PEAEFKEAHPPGAINVQIYRLIKEWTA 142
                V          +   VI+D R          E+ E H PGA+             
Sbjct: 8   SSEFLVSPDWLAENLDDPAVVIVDARIILPDPDDAEEYLEGHIPGAVFF----------- 56

Query: 143 WDIARRAAFAFFGIFSGTEE------NPEFLQSVESQL--DKDAKIIVACATGGTMKPSQ 194
            D             S          +PE    +  +L    D  ++V    GG      
Sbjct: 57  -DWEA--------DLSDPVPLPHMLPSPEQFAKLLGELGIRNDDTVVVYDDGGG------ 101

Query: 195 NLPEGQQSRSLIAAYLLVLNGYKNVYHLEGGLYKWFKEELP 235
                  +R   A +LL   G++NV  L+GGL  W    LP
Sbjct: 102 ----FFAAR---AWWLLRYLGHENVRILDGGLPAWKAAGLP 135

Length = 285

>gnl|CDD|238779 cd01521, RHOD_PspE2, Member of the Rhodanese Homology Domain superfamily

 Score = 36.6 bits (85), Expect = 0.002
 Identities = 11/23 (47%), Positives = 15/23 (65%)

Query: 108 NFVILDVRPEAEFKEAHPPGAIN 130
           +FV++DVR    +   H PGAIN
Sbjct: 25  DFVLVDVRSAEAYARGHVPGAIN 47

This CD includes the putative rhodanese-like protein, Psp2, of Yersinia pestis biovar Medievalis and other similar uncharacterized proteins. Length = 110

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	240
PLN02160	136	thiosulfate sulfurtransferase	99.89
cd01518	101	RHOD_YceA Member of the Rhodanese Homology Domain	99.89
PRK00162	108	glpE thiosulfate sulfurtransferase; Validated	99.89
cd01533	109	4RHOD_Repeat_2 Member of the Rhodanese Homology Do	99.89
cd01527	99	RHOD_YgaP Member of the Rhodanese Homology Domain	99.88
KOG1530	136	consensus Rhodanese-related sulfurtransferase [Ino	99.88
cd01523	100	RHOD_Lact_B Member of the Rhodanese Homology Domai	99.86
cd01448	122	TST_Repeat_1 Thiosulfate sulfurtransferase (TST),	99.86
cd01521	110	RHOD_PspE2 Member of the Rhodanese Homology Domain	99.86
cd01519	106	RHOD_HSP67B2 Member of the Rhodanese Homology Doma	99.86
cd01520	128	RHOD_YbbB Member of the Rhodanese Homology Domain	99.85
cd01526	122	RHOD_ThiF Member of the Rhodanese Homology Domain	99.85
cd01528	101	RHOD_2 Member of the Rhodanese Homology Domain sup	99.85
cd01534	95	4RHOD_Repeat_3 Member of the Rhodanese Homology Do	99.85
cd01444	96	GlpE_ST GlpE sulfurtransferase (ST) and homologs a	99.84
cd01449	118	TST_Repeat_2 Thiosulfate sulfurtransferase (TST),	99.84
TIGR03865	162	PQQ_CXXCW PQQ-dependent catabolism-associated CXXC	99.84
cd01447	103	Polysulfide_ST Polysulfide-sulfurtransferase - Rho	99.84
cd01524	90	RHOD_Pyr_redox Member of the Rhodanese Homology Do	99.84
cd01525	105	RHOD_Kc Member of the Rhodanese Homology Domain su	99.83
PF00581	113	Rhodanese: Rhodanese-like domain This Prosite entr	99.83
cd01522	117	RHOD_1 Member of the Rhodanese Homology Domain sup	99.83
PRK11493	281	sseA 3-mercaptopyruvate sulfurtransferase; Provisi	99.83
PLN02723	320	3-mercaptopyruvate sulfurtransferase	99.82
smart00450	100	RHOD Rhodanese Homology Domain. An alpha beta fold	99.82
cd01530	121	Cdc25 Cdc25 phosphatases are members of the Rhodan	99.82
cd01529	96	4RHOD_Repeats Member of the Rhodanese Homology Dom	99.82
PRK01415	247	hypothetical protein; Validated	99.82
cd01535	145	4RHOD_Repeat_4 Member of the Rhodanese Homology Do	99.82
cd01445	138	TST_Repeats Thiosulfate sulfurtransferases (TST) c	99.81
PRK09629	610	bifunctional thiosulfate sulfurtransferase/phospha	99.81
PLN02723	320	3-mercaptopyruvate sulfurtransferase	99.8
cd01532	92	4RHOD_Repeat_1 Member of the Rhodanese Homology Do	99.79
cd01531	113	Acr2p Eukaryotic arsenate resistance proteins are	99.79
PRK11493	281	sseA 3-mercaptopyruvate sulfurtransferase; Provisi	99.79
COG2897	285	SseA Rhodanese-related sulfurtransferase [Inorgani	99.79
PRK08762	376	molybdopterin biosynthesis protein MoeB; Validated	99.79
cd00158	89	RHOD Rhodanese Homology Domain (RHOD); an alpha be	99.79
COG0607	110	PspE Rhodanese-related sulfurtransferase [Inorgani	99.78
cd01443	113	Cdc25_Acr2p Cdc25 enzymes are members of the Rhoda	99.77
PRK05320	257	rhodanese superfamily protein; Provisional	99.76
PRK00142	314	putative rhodanese-related sulfurtransferase; Prov	99.76
PRK09629	610	bifunctional thiosulfate sulfurtransferase/phospha	99.76
COG2897	285	SseA Rhodanese-related sulfurtransferase [Inorgani	99.75
TIGR02981	101	phageshock_pspE phage shock operon rhodanese PspE.	99.74
PRK10287	104	thiosulfate:cyanide sulfurtransferase; Provisional	99.73
PRK07878	392	molybdopterin biosynthesis-like protein MoeZ; Vali	99.72
TIGR03167	311	tRNA_sel_U_synt tRNA 2-selenouridine synthase. The	99.72
PRK07411	390	hypothetical protein; Validated	99.7
PRK11784	345	tRNA 2-selenouridine synthase; Provisional	99.69
PRK05597	355	molybdopterin biosynthesis protein MoeB; Validated	99.66
cd01446	132	DSP_MapKP N-terminal regulatory rhodanese domain o	99.65
COG1054	308	Predicted sulfurtransferase [General function pred	99.59
PRK05600	370	thiamine biosynthesis protein ThiF; Validated	99.59
KOG1529	286	consensus Mercaptopyruvate sulfurtransferase/thios	99.4
PRK01269	482	tRNA s(4)U8 sulfurtransferase; Provisional	99.35
KOG3772	325	consensus M-phase inducer phosphatase [Cell cycle	99.27
KOG2017	427	consensus Molybdopterin synthase sulfurylase [Coen	99.13
KOG1529	286	consensus Mercaptopyruvate sulfurtransferase/thios	99.06
COG5105	427	MIH1 Mitotic inducer, protein phosphatase [Cell di	98.34
COG2603	334	Predicted ATPase [General function prediction only	97.69
KOG1717	343	consensus Dual specificity phosphatase [Defense me	96.25
KOG1093	725	consensus Predicted protein kinase (contains TBC a	96.07
KOG3636	669	consensus Uncharacterized conserved protein, conta	95.65
PRK00142	314	putative rhodanese-related sulfurtransferase; Prov	95.37
PF04273	110	DUF442: Putative phosphatase (DUF442); InterPro: I	95.14
TIGR01244	135	conserved hypothetical protein TIGR01244. No membe	94.72
PF13350	164	Y_phosphatase3: Tyrosine phosphatase family; PDB:	92.45
cd00127	139	DSPc Dual specificity phosphatases (DSP); Ser/Thr	89.71
TIGR03167	311	tRNA_sel_U_synt tRNA 2-selenouridine synthase. The	89.33
smart00195	138	DSPc Dual specificity phosphatase, catalytic domai	85.43
PF01451	138	LMWPc: Low molecular weight phosphotyrosine protei	80.88
PLN02727	986	NAD kinase	80.66

>PLN02160 thiosulfate sulfurtransferase

Probab=99.89  E-value=5.5e-23  Score=165.30  Aligned_cols=116  Identities=36%  Similarity=0.558  Sum_probs=95.6

Q ss_pred             cCccccHHHHHHHhcCCCeEEEEcCChhhhhhCCCCCC--eeechhhHHhhhhHHHHHHHhhhhhcccCCCCCCcHHHHH
Q 026302           91 RVRSVEAKEALRLQKENNFVILDVRPEAEFKEAHPPGA--INVQIYRLIKEWTAWDIARRAAFAFFGIFSGTEENPEFLQ  168 (240)
Q Consensus        91 ~~~~Is~~el~~~l~~~~~~lIDvR~~~ey~~ghIpGA--inip~~~l~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~  168 (240)
                      .+..|+++++.++++. +.+|||||++.||..||||||  +|+|+..+...                   ..-..+++..
T Consensus        13 ~~~~i~~~e~~~~~~~-~~~lIDVR~~~E~~~ghIpgA~~iniP~~~~~~~-------------------~~l~~~~~~~   72 (136)
T PLN02160         13 EVVSVDVSQAKTLLQS-GHQYLDVRTQDEFRRGHCEAAKIVNIPYMLNTPQ-------------------GRVKNQEFLE   72 (136)
T ss_pred             eeeEeCHHHHHHHHhC-CCEEEECCCHHHHhcCCCCCcceecccchhcCcc-------------------cccCCHHHHH
Confidence            4668999999999876 468999999999999999999  89997543210                   0011244555


Q ss_pred             HHHhcCCCCCcEEEEcCCCCCCCCCCCCCCchhhHHHHHHHHHHHCCCCceEEccccHHHHHhCCCCCccCC
Q 026302          169 SVESQLDKDAKIIVACATGGTMKPSQNLPEGQQSRSLIAAYLLVLNGYKNVYHLEGGLYKWFKEELPEVSEE  240 (240)
Q Consensus       169 ~~~~~i~~~~~IVvyC~~G~~~~~~~~~~~~~~~rs~~aa~~L~~~G~~nV~~l~GG~~~W~~~g~pv~~~~  240 (240)
                      .+...++++++|||||.+|.              ||..++..|...||++|++|+|||.+|.+.|+|+.+.|
T Consensus        73 ~~~~~~~~~~~IivyC~sG~--------------RS~~Aa~~L~~~G~~~v~~l~GG~~~W~~~g~p~~~~~  130 (136)
T PLN02160         73 QVSSLLNPADDILVGCQSGA--------------RSLKATTELVAAGYKKVRNKGGGYLAWVDHSFPINQEE  130 (136)
T ss_pred             HHHhccCCCCcEEEECCCcH--------------HHHHHHHHHHHcCCCCeeecCCcHHHHhhCCCCccccc
Confidence            55445688999999999998              99999999999999999999999999999999998874

>cd01518 RHOD_YceA Member of the Rhodanese Homology Domain superfamily

Probab=99.89  E-value=5.2e-23  Score=156.13  Aligned_cols=99  Identities=30%  Similarity=0.444  Sum_probs=83.6

Q ss_pred             cccHHHHHHHhcCCCeEEEEcCChhhhhhCCCCCCeeechhhHHhhhhHHHHHHHhhhhhcccCCCCCCcHHHHHHHHhc
Q 026302           94 SVEAKEALRLQKENNFVILDVRPEAEFKEAHPPGAINVQIYRLIKEWTAWDIARRAAFAFFGIFSGTEENPEFLQSVESQ  173 (240)
Q Consensus        94 ~Is~~el~~~l~~~~~~lIDvR~~~ey~~ghIpGAinip~~~l~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~  173 (240)
                      .|+++++.+++++++++|||||++.||..||||||+|+|+..+....                        ..+.++ ..
T Consensus         3 ~is~~~l~~~~~~~~~~iiDvR~~~e~~~ghi~gA~~ip~~~~~~~~------------------------~~~~~~-~~   57 (101)
T cd01518           3 YLSPAEWNELLEDPEVVLLDVRNDYEYDIGHFKGAVNPDVDTFREFP------------------------FWLDEN-LD   57 (101)
T ss_pred             cCCHHHHHHHHcCCCEEEEEcCChhhhhcCEeccccCCCcccHhHhH------------------------HHHHhh-hh
Confidence            58999999999877899999999999999999999999998754211                        111111 13


Q ss_pred             CCCCCcEEEEcCCCCCCCCCCCCCCchhhHHHHHHHHHHHCCCCceEEccccHHHHHh
Q 026302          174 LDKDAKIIVACATGGTMKPSQNLPEGQQSRSLIAAYLLVLNGYKNVYHLEGGLYKWFK  231 (240)
Q Consensus       174 i~~~~~IVvyC~~G~~~~~~~~~~~~~~~rs~~aa~~L~~~G~~nV~~l~GG~~~W~~  231 (240)
                      .+++++|||||++|.              ||..++.+|+.+||+||++|+||+.+|.+
T Consensus        58 ~~~~~~ivvyC~~G~--------------rs~~a~~~L~~~G~~~v~~l~GG~~~W~~  101 (101)
T cd01518          58 LLKGKKVLMYCTGGI--------------RCEKASAYLKERGFKNVYQLKGGILKYLE  101 (101)
T ss_pred             hcCCCEEEEECCCch--------------hHHHHHHHHHHhCCcceeeechhHHHHhC
Confidence            478999999999998              99999999999999999999999999963

This CD includes Escherichia coli YceA, Bacillus subtilis YbfQ, and similar uncharacterized proteins.

>PRK00162 glpE thiosulfate sulfurtransferase; Validated

Probab=99.89  E-value=1.3e-22  Score=155.90  Aligned_cols=104  Identities=28%  Similarity=0.465  Sum_probs=91.6

Q ss_pred             cCccccHHHHHHHhcCCCeEEEEcCChhhhhhCCCCCCeeechhhHHhhhhHHHHHHHhhhhhcccCCCCCCcHHHHHHH
Q 026302           91 RVRSVEAKEALRLQKENNFVILDVRPEAEFKEAHPPGAINVQIYRLIKEWTAWDIARRAAFAFFGIFSGTEENPEFLQSV  170 (240)
Q Consensus        91 ~~~~Is~~el~~~l~~~~~~lIDvR~~~ey~~ghIpGAinip~~~l~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~  170 (240)
                      .++.++++++.+.++.++.+|||||++.||..||||||+|+|+..+...                           +   
T Consensus         3 ~~~~is~~el~~~l~~~~~~ivDvR~~~e~~~ghi~gA~~ip~~~l~~~---------------------------~---   52 (108)
T PRK00162          3 QFECINVEQAHQKLQEGGAVLVDIRDPQSFAMGHAPGAFHLTNDSLGAF---------------------------M---   52 (108)
T ss_pred             CccccCHHHHHHHHHcCCCEEEEcCCHHHHhcCCCCCCeECCHHHHHHH---------------------------H---
Confidence            4568999999999977778999999999999999999999998665321                           1   


Q ss_pred             HhcCCCCCcEEEEcCCCCCCCCCCCCCCchhhHHHHHHHHHHHCCCCceEEccccHHHHHhCCCCCccC
Q 026302          171 ESQLDKDAKIIVACATGGTMKPSQNLPEGQQSRSLIAAYLLVLNGYKNVYHLEGGLYKWFKEELPEVSE  239 (240)
Q Consensus       171 ~~~i~~~~~IVvyC~~G~~~~~~~~~~~~~~~rs~~aa~~L~~~G~~nV~~l~GG~~~W~~~g~pv~~~  239 (240)
                       ..++++++|+|||.+|.              +|..++..|+..||+||++|+||+.+|...|+|++..
T Consensus        53 -~~~~~~~~ivv~c~~g~--------------~s~~a~~~L~~~G~~~v~~l~GG~~~w~~~~~~~~~~  106 (108)
T PRK00162         53 -RQADFDTPVMVMCYHGN--------------SSQGAAQYLLQQGFDVVYSIDGGFEAWRRTFPAEVAS  106 (108)
T ss_pred             -HhcCCCCCEEEEeCCCC--------------CHHHHHHHHHHCCchheEEecCCHHHHHhcCCCccCC
Confidence             34688999999999998              8999999999999999999999999999999998753

>cd01533 4RHOD_Repeat_2 Member of the Rhodanese Homology Domain superfamily, repeat 2

Probab=99.89  E-value=1.5e-22  Score=155.81  Aligned_cols=101  Identities=30%  Similarity=0.420  Sum_probs=85.8

Q ss_pred             hcCccccHHHHHHHhcCC-CeEEEEcCChhhhhhCCCCCCeeechhhHHhhhhHHHHHHHhhhhhcccCCCCCCcHHHHH
Q 026302           90 KRVRSVEAKEALRLQKEN-NFVILDVRPEAEFKEAHPPGAINVQIYRLIKEWTAWDIARRAAFAFFGIFSGTEENPEFLQ  168 (240)
Q Consensus        90 ~~~~~Is~~el~~~l~~~-~~~lIDvR~~~ey~~ghIpGAinip~~~l~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~  168 (240)
                      ..+..|+++++.++++++ +.+|||||++.||..||||||+|+|+.++...                           +.
T Consensus         7 ~~~~~i~~~~l~~~~~~~~~~~liDvR~~~e~~~ghIpgainip~~~l~~~---------------------------~~   59 (109)
T cd01533           7 RHTPSVSADELAALQARGAPLVVLDGRRFDEYRKMTIPGSVSCPGAELVLR---------------------------VG   59 (109)
T ss_pred             ccCCcCCHHHHHHHHhcCCCcEEEeCCCHHHHhcCcCCCceeCCHHHHHHH---------------------------HH
Confidence            345689999999998765 57899999999999999999999999776432                           11


Q ss_pred             HHHhcCCCCCcEEEEcCCCCCCCCCCCCCCchhhHHHHHHHHHHHCCCCc-eEEccccHHHHHhCC
Q 026302          169 SVESQLDKDAKIIVACATGGTMKPSQNLPEGQQSRSLIAAYLLVLNGYKN-VYHLEGGLYKWFKEE  233 (240)
Q Consensus       169 ~~~~~i~~~~~IVvyC~~G~~~~~~~~~~~~~~~rs~~aa~~L~~~G~~n-V~~l~GG~~~W~~~g  233 (240)
                      .+  ..+++++|||||.+|.              ||..++..|+..||+| |++|+||+.+|..+|
T Consensus        60 ~l--~~~~~~~ivv~C~~G~--------------rs~~a~~~L~~~G~~~~v~~l~gG~~~W~~~g  109 (109)
T cd01533          60 EL--APDPRTPIVVNCAGRT--------------RSIIGAQSLINAGLPNPVAALRNGTQGWTLAG  109 (109)
T ss_pred             hc--CCCCCCeEEEECCCCc--------------hHHHHHHHHHHCCCCcceeEecCCHHHHHhcC
Confidence            22  2367889999999998              9999999999999988 999999999999876

This CD includes putative rhodanese-related sulfurtransferases which contain 4 copies of the Rhodanese Homology Domain. This CD aligns the 2nd repeat which does contain the putative catalytic Cys residue.

>cd01527 RHOD_YgaP Member of the Rhodanese Homology Domain superfamily

Probab=99.88  E-value=1.9e-22  Score=152.16  Aligned_cols=98  Identities=30%  Similarity=0.402  Sum_probs=87.1

Q ss_pred             ccccHHHHHHHhcCCCeEEEEcCChhhhhhCCCCCCeeechhhHHhhhhHHHHHHHhhhhhcccCCCCCCcHHHHHHHHh
Q 026302           93 RSVEAKEALRLQKENNFVILDVRPEAEFKEAHPPGAINVQIYRLIKEWTAWDIARRAAFAFFGIFSGTEENPEFLQSVES  172 (240)
Q Consensus        93 ~~Is~~el~~~l~~~~~~lIDvR~~~ey~~ghIpGAinip~~~l~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~  172 (240)
                      ..|+++|+.++++.+ .+|||+|++.||..||||||+|+|+..+....                               .
T Consensus         2 ~~i~~~el~~~~~~~-~~liDvR~~~e~~~~hi~ga~~ip~~~~~~~~-------------------------------~   49 (99)
T cd01527           2 TTISPNDACELLAQG-AVLVDIREPDEYLRERIPGARLVPLSQLESEG-------------------------------L   49 (99)
T ss_pred             CccCHHHHHHHHHCC-CEEEECCCHHHHHhCcCCCCEECChhHhcccc-------------------------------c
Confidence            468999999998875 89999999999999999999999997653210                               2


Q ss_pred             cCCCCCcEEEEcCCCCCCCCCCCCCCchhhHHHHHHHHHHHCCCCceEEccccHHHHHhCCCCC
Q 026302          173 QLDKDAKIIVACATGGTMKPSQNLPEGQQSRSLIAAYLLVLNGYKNVYHLEGGLYKWFKEELPE  236 (240)
Q Consensus       173 ~i~~~~~IVvyC~~G~~~~~~~~~~~~~~~rs~~aa~~L~~~G~~nV~~l~GG~~~W~~~g~pv  236 (240)
                      .++++++|||||.+|.              ++..++..|.+.||++|++|+||+.+|...|+|+
T Consensus        50 ~~~~~~~iv~~c~~g~--------------~s~~~~~~L~~~g~~~v~~l~gG~~~W~~~~~~~   99 (99)
T cd01527          50 PLVGANAIIFHCRSGM--------------RTQQNAERLAAISAGEAYVLEGGLDAWKAAGLPV   99 (99)
T ss_pred             CCCCCCcEEEEeCCCc--------------hHHHHHHHHHHcCCccEEEeeCCHHHHHHCcCCC
Confidence            4688999999999998              8999999999999999999999999999999985

This CD includes Escherichia coli YgaP, and similar uncharacterized putative rhodanese-related sulfurtransferases.

>KOG1530 consensus Rhodanese-related sulfurtransferase [Inorganic ion transport and metabolism]

Probab=99.88  E-value=2.3e-22  Score=158.10  Aligned_cols=115  Identities=37%  Similarity=0.579  Sum_probs=100.0

Q ss_pred             hcCccccHHHHHHHhcCCCeEEEEcCChhhhhhCCCCCCeeechhhHHhhhhHHHHHHHhhhhhcccCCCCCCcHHHHHH
Q 026302           90 KRVRSVEAKEALRLQKENNFVILDVRPEAEFKEAHPPGAINVQIYRLIKEWTAWDIARRAAFAFFGIFSGTEENPEFLQS  169 (240)
Q Consensus        90 ~~~~~Is~~el~~~l~~~~~~lIDvR~~~ey~~ghIpGAinip~~~l~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~  169 (240)
                      ..+..++.++++.+++.+++++||||.++||.+||||.+||||+.....+                   +...+++|.+.
T Consensus        20 ~~~~sv~~~qvk~L~~~~~~~llDVRepeEfk~gh~~~siNiPy~~~~~~-------------------~~l~~~eF~kq   80 (136)
T KOG1530|consen   20 SNPQSVSVEQVKNLLQHPDVVLLDVREPEEFKQGHIPASINIPYMSRPGA-------------------GALKNPEFLKQ   80 (136)
T ss_pred             CCcEEEEHHHHHHHhcCCCEEEEeecCHHHhhccCCcceEeccccccccc-------------------cccCCHHHHHH
Confidence            45668999999999999889999999999999999999999999654332                   22346889988


Q ss_pred             HHhcCC-CCCcEEEEcCCCCCCCCCCCCCCchhhHHHHHHHHHHHCCCCceEEccccHHHHHhCCCCCc
Q 026302          170 VESQLD-KDAKIIVACATGGTMKPSQNLPEGQQSRSLIAAYLLVLNGYKNVYHLEGGLYKWFKEELPEV  237 (240)
Q Consensus       170 ~~~~i~-~~~~IVvyC~~G~~~~~~~~~~~~~~~rs~~aa~~L~~~G~~nV~~l~GG~~~W~~~g~pv~  237 (240)
                      +....+ .++.|||+|.+|.              |+..|...|...||+||.+|.|||.+|.+.|+|..
T Consensus        81 vg~~kp~~d~eiIf~C~SG~--------------Rs~~A~~~l~s~Gyknv~ny~Gs~~~W~~k~~~~~  135 (136)
T KOG1530|consen   81 VGSSKPPHDKEIIFGCASGV--------------RSLKATKILVSAGYKNVGNYPGSYLAWVDKGGPKK  135 (136)
T ss_pred             hcccCCCCCCcEEEEeccCc--------------chhHHHHHHHHcCcccccccCccHHHHHHccCCCC
Confidence            855554 4559999999998              99999999999999999999999999999998864

>cd01523 RHOD_Lact_B Member of the Rhodanese Homology Domain superfamily

Probab=99.86  E-value=1.1e-21  Score=148.34  Aligned_cols=98  Identities=28%  Similarity=0.448  Sum_probs=81.8

Q ss_pred             ccHHHHHHHhcCC-CeEEEEcCChhhhhhCCCCCCeeechhhHHhhhhHHHHHHHhhhhhcccCCCCCCcHHHHHHHHhc
Q 026302           95 VEAKEALRLQKEN-NFVILDVRPEAEFKEAHPPGAINVQIYRLIKEWTAWDIARRAAFAFFGIFSGTEENPEFLQSVESQ  173 (240)
Q Consensus        95 Is~~el~~~l~~~-~~~lIDvR~~~ey~~ghIpGAinip~~~l~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~  173 (240)
                      |+++|+.++++++ +++|||||++.||..||||||+|+|+..+...+.                       +...+....
T Consensus         1 is~~el~~~l~~~~~~~liDvR~~~e~~~ghi~ga~~ip~~~~~~~~~-----------------------~~~~~~~~~   57 (100)
T cd01523           1 LDPEDLYARLLAGQPLFILDVRNESDYERWKIDGENNTPYFDPYFDFL-----------------------EIEEDILDQ   57 (100)
T ss_pred             CCHHHHHHHHHcCCCcEEEEeCCHHHHhhcccCCCcccccccchHHHH-----------------------HhhHHHHhh
Confidence            5788999988764 6899999999999999999999999987654320                       001122346


Q ss_pred             CCCCCcEEEEcCCCCCCCCCCCCCCchhhHHHHHHHHHHHCCCCceEEccccHHHHH
Q 026302          174 LDKDAKIIVACATGGTMKPSQNLPEGQQSRSLIAAYLLVLNGYKNVYHLEGGLYKWF  230 (240)
Q Consensus       174 i~~~~~IVvyC~~G~~~~~~~~~~~~~~~rs~~aa~~L~~~G~~nV~~l~GG~~~W~  230 (240)
                      ++++++|||||.+|.              ||..++..|+..||+ +++|.||+.+|.
T Consensus        58 ~~~~~~ivv~C~~G~--------------rs~~aa~~L~~~G~~-~~~l~GG~~~W~   99 (100)
T cd01523          58 LPDDQEVTVICAKEG--------------SSQFVAELLAERGYD-VDYLAGGMKAWS   99 (100)
T ss_pred             CCCCCeEEEEcCCCC--------------cHHHHHHHHHHcCce-eEEeCCcHHhhc
Confidence            789999999999998              999999999999998 999999999996

This CD includes predicted proteins with rhodanese-like domains found N-terminal of the metallo-beta-lactamase domain.

>cd01448 TST_Repeat_1 Thiosulfate sulfurtransferase (TST), N-terminal, inactive domain

Probab=99.86  E-value=1.9e-21  Score=152.08  Aligned_cols=113  Identities=27%  Similarity=0.302  Sum_probs=89.3

Q ss_pred             ccHHHHHHHhcCCCeEEEEcCCh-------hhhhhCCCCCCeeechhhHHhhhhHHHHHHHhhhhhcccCCCCCCcHHHH
Q 026302           95 VEAKEALRLQKENNFVILDVRPE-------AEFKEAHPPGAINVQIYRLIKEWTAWDIARRAAFAFFGIFSGTEENPEFL  167 (240)
Q Consensus        95 Is~~el~~~l~~~~~~lIDvR~~-------~ey~~ghIpGAinip~~~l~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~  167 (240)
                      |+++++.+++++++.+|||+|++       .+|..||||||+|+|+.++.....          .+.|.+...+++.+++
T Consensus         2 i~~~~l~~~l~~~~~~ivDvR~~~~~~~~~~~~~~ghI~ga~~i~~~~~~~~~~----------~~~~~~~~~~~~~~~~   71 (122)
T cd01448           2 VSPDWLAEHLDDPDVRILDARWYLPDRDGRKEYLEGHIPGAVFFDLDEDLDDKS----------PGPHMLPSPEEFAELL   71 (122)
T ss_pred             cCHHHHHHHhCCCCeEEEEeecCCCCCchhhHHhhCCCCCCEEcChhhccccCC----------CCCCCCCCHHHHHHHH
Confidence            78899999998878899999999       999999999999999987643210          0122223322333333


Q ss_pred             HHHHhcCCCCCcEEEEcCCC-CCCCCCCCCCCchhhHHHHHHHHHHHCCCCceEEccccHHHHHhCC
Q 026302          168 QSVESQLDKDAKIIVACATG-GTMKPSQNLPEGQQSRSLIAAYLLVLNGYKNVYHLEGGLYKWFKEE  233 (240)
Q Consensus       168 ~~~~~~i~~~~~IVvyC~~G-~~~~~~~~~~~~~~~rs~~aa~~L~~~G~~nV~~l~GG~~~W~~~g  233 (240)
                      ..+  +++++++|||||++| .              +|..+++.|+.+||++|++|+||+.+|..+|
T Consensus        72 ~~~--~~~~~~~vv~~c~~g~~--------------~a~~~~~~l~~~G~~~v~~l~GG~~~W~~~g  122 (122)
T cd01448          72 GSL--GISNDDTVVVYDDGGGF--------------FAARAWWTLRYFGHENVRVLDGGLQAWKAEG  122 (122)
T ss_pred             HHc--CCCCCCEEEEECCCCCc--------------cHHHHHHHHHHcCCCCEEEecCCHHHHHhCc
Confidence            332  688999999999995 5              8999999999999999999999999999875

TST contains 2 copies of the Rhodanese Homology Domain; this is the 1st repeat, which does not contain the catalytically active Cys residue. The role of the 1st repeat is uncertain, but it is believed to be involved in protein interaction.

>cd01521 RHOD_PspE2 Member of the Rhodanese Homology Domain superfamily

Probab=99.86  E-value=4.4e-21  Score=148.03  Aligned_cols=101  Identities=28%  Similarity=0.455  Sum_probs=86.7

Q ss_pred             ccccHHHHHHHhcCC--CeEEEEcCChhhhhhCCCCCCeeechhhHHhhhhHHHHHHHhhhhhcccCCCCCCcHHHHHHH
Q 026302           93 RSVEAKEALRLQKEN--NFVILDVRPEAEFKEAHPPGAINVQIYRLIKEWTAWDIARRAAFAFFGIFSGTEENPEFLQSV  170 (240)
Q Consensus        93 ~~Is~~el~~~l~~~--~~~lIDvR~~~ey~~ghIpGAinip~~~l~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~  170 (240)
                      ..++++|+.+++..+  +.+|||||++.+|..||||||+|+|+..+...                              .
T Consensus         8 ~~~s~~el~~~l~~~~~~~~iiDvR~~~e~~~ghIpgA~~ip~~~l~~~------------------------------~   57 (110)
T cd01521           8 FETDCWDVAIALKNGKPDFVLVDVRSAEAYARGHVPGAINLPHREICEN------------------------------A   57 (110)
T ss_pred             eecCHHHHHHHHHcCCCCEEEEECCCHHHHhcCCCCCCEeCCHHHhhhH------------------------------h
Confidence            379999999998763  58999999999999999999999998775321                              0


Q ss_pred             HhcCCCCCcEEEEcCCCCCCCCCCCCCCchhhHHHHHHHHHHHCCCCceEEccccHHHHHhCCCCC
Q 026302          171 ESQLDKDAKIIVACATGGTMKPSQNLPEGQQSRSLIAAYLLVLNGYKNVYHLEGGLYKWFKEELPE  236 (240)
Q Consensus       171 ~~~i~~~~~IVvyC~~G~~~~~~~~~~~~~~~rs~~aa~~L~~~G~~nV~~l~GG~~~W~~~g~pv  236 (240)
                      ...++++++|||||++|.|            .+|..++..|+++||+ |++|+||+.+|..+|+|+
T Consensus        58 ~~~i~~~~~vvvyc~~g~~------------~~s~~~a~~l~~~G~~-v~~l~GG~~~W~~~g~~~  110 (110)
T cd01521          58 TAKLDKEKLFVVYCDGPGC------------NGATKAALKLAELGFP-VKEMIGGLDWWKREGYAT  110 (110)
T ss_pred             hhcCCCCCeEEEEECCCCC------------chHHHHHHHHHHcCCe-EEEecCCHHHHHHCCCCC
Confidence            1367899999999998853            2799999999999995 999999999999999985

This CD includes the putative rhodanese-like protein, Psp2, of Yersinia pestis biovar Medievalis and other similar uncharacterized proteins.

>cd01519 RHOD_HSP67B2 Member of the Rhodanese Homology Domain superfamily

Probab=99.86  E-value=1.5e-21  Score=148.58  Aligned_cols=102  Identities=32%  Similarity=0.439  Sum_probs=82.2

Q ss_pred             cHHHHHHHhc-CCCeEEEEcCChhhhhhCCCCCCeeechhhHHhhhhHHHHHHHhhhhhcccCCCCCCcHHHHHHHHh-c
Q 026302           96 EAKEALRLQK-ENNFVILDVRPEAEFKEAHPPGAINVQIYRLIKEWTAWDIARRAAFAFFGIFSGTEENPEFLQSVES-Q  173 (240)
Q Consensus        96 s~~el~~~l~-~~~~~lIDvR~~~ey~~ghIpGAinip~~~l~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~-~  173 (240)
                      +++++.++++ .++.+|||+|++.||..||||||+|+|+..+.+..                   .....+|.+.+.. .
T Consensus         2 ~~~~~~~~l~~~~~~~iiDvR~~~e~~~ghIpgA~~ip~~~~~~~~-------------------~~~~~~~~~~~~~~~   62 (106)
T cd01519           2 SFEEVKNLPNPHPNKVLIDVREPEELKTGKIPGAINIPLSSLPDAL-------------------ALSEEEFEKKYGFPK   62 (106)
T ss_pred             cHHHHHHhcCCCCCEEEEECCCHHHHhcCcCCCcEEechHHhhhhh-------------------CCCHHHHHHHhcccC
Confidence            5788888887 66799999999999999999999999998764321                   0111233333311 4


Q ss_pred             CCCCCcEEEEcCCCCCCCCCCCCCCchhhHHHHHHHHHHHCCCCceEEccccHHHHH
Q 026302          174 LDKDAKIIVACATGGTMKPSQNLPEGQQSRSLIAAYLLVLNGYKNVYHLEGGLYKWF  230 (240)
Q Consensus       174 i~~~~~IVvyC~~G~~~~~~~~~~~~~~~rs~~aa~~L~~~G~~nV~~l~GG~~~W~  230 (240)
                      ++++++|||||.+|.              +|..+++.|+.+||+||++|+||+.+|.
T Consensus        63 ~~~~~~ivv~c~~g~--------------~s~~~~~~l~~~G~~~v~~~~Gg~~~W~  105 (106)
T cd01519          63 PSKDKELIFYCKAGV--------------RSKAAAELARSLGYENVGNYPGSWLDWA  105 (106)
T ss_pred             CCCCCeEEEECCCcH--------------HHHHHHHHHHHcCCccceecCCcHHHHc
Confidence            578899999999997              9999999999999999999999999996

This CD includes the heat shock protein 67B2 of Drosophila melanogaster and other similar proteins, many of which are uncharacterized.

>cd01520 RHOD_YbbB Member of the Rhodanese Homology Domain superfamily

Probab=99.85  E-value=5.8e-21  Score=151.45  Aligned_cols=120  Identities=32%  Similarity=0.414  Sum_probs=84.4

Q ss_pred             ccHHHHHHHhcCCCeEEEEcCChhhhhhCCCCCCeeechhhHHhhhhHHHH---H-HHhhhhhcccCCCCCCcHHHHHHH
Q 026302           95 VEAKEALRLQKENNFVILDVRPEAEFKEAHPPGAINVQIYRLIKEWTAWDI---A-RRAAFAFFGIFSGTEENPEFLQSV  170 (240)
Q Consensus        95 Is~~el~~~l~~~~~~lIDvR~~~ey~~ghIpGAinip~~~l~~~~~~~~~---~-~~~~~~~~g~~~~~~~~~~~~~~~  170 (240)
                      |+++|+.++++ ++.+|||||++.||..||||||+|||+..+.........   . +..+...+..+. ....+++.+++
T Consensus         1 ~s~~el~~~l~-~~~~iiDvR~~~e~~~ghIpgAinip~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~   78 (128)
T cd01520           1 ITAEDLLALRK-ADGPLIDVRSPKEFFEGHLPGAINLPLLDDEERALVGTLYKQQGREAAIELGLELV-SGKLKRILNEA   78 (128)
T ss_pred             CCHHHHHHHHh-cCCEEEECCCHHHhccCcCCCcEEccCCChhHHHHhhhheeccCHHHHHHHHHHHH-hhhHHHHHHHH
Confidence            68899999988 478999999999999999999999999654322100000   0 000000000000 02234555554


Q ss_pred             H-hcCCCCCcEEEEcC-CCCCCCCCCCCCCchhhHHHHHHHHHHHCCCCceEEccccHHHHHh
Q 026302          171 E-SQLDKDAKIIVACA-TGGTMKPSQNLPEGQQSRSLIAAYLLVLNGYKNVYHLEGGLYKWFK  231 (240)
Q Consensus       171 ~-~~i~~~~~IVvyC~-~G~~~~~~~~~~~~~~~rs~~aa~~L~~~G~~nV~~l~GG~~~W~~  231 (240)
                      . .+++++++|||||. +|.              ||..+++.|+.+|| +|++|+||+.+|..
T Consensus        79 ~~~~i~~~~~vvvyC~~~G~--------------rs~~a~~~L~~~G~-~v~~L~GG~~aw~~  126 (128)
T cd01520          79 WEARLERDPKLLIYCARGGM--------------RSQSLAWLLESLGI-DVPLLEGGYKAYRK  126 (128)
T ss_pred             HHhccCCCCeEEEEeCCCCc--------------cHHHHHHHHHHcCC-ceeEeCCcHHHHHh
Confidence            3 47899999999997 465              99999999999999 59999999999975

This CD includes several putative ATP /GTP binding proteins including E. coli YbbB.

>cd01526 RHOD_ThiF Member of the Rhodanese Homology Domain superfamily

Probab=99.85  E-value=6.2e-21  Score=149.92  Aligned_cols=110  Identities=29%  Similarity=0.426  Sum_probs=88.9

Q ss_pred             CccccHHHHHHHhcC-CCeEEEEcCChhhhhhCCCCCCeeechhhHHhhhhHHHHHHHhhhhhcccCCCCCCcHHHHHHH
Q 026302           92 VRSVEAKEALRLQKE-NNFVILDVRPEAEFKEAHPPGAINVQIYRLIKEWTAWDIARRAAFAFFGIFSGTEENPEFLQSV  170 (240)
Q Consensus        92 ~~~Is~~el~~~l~~-~~~~lIDvR~~~ey~~ghIpGAinip~~~l~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~  170 (240)
                      ...|+++++.+++++ .+++|||||++.||..||||||+|+|+..+......                    .+.. ...
T Consensus         7 ~~~is~~el~~~~~~~~~~~ivDvR~~~e~~~~hIpgai~ip~~~~~~~~~~--------------------~~~~-~~~   65 (122)
T cd01526           7 EERVSVKDYKNILQAGKKHVLLDVRPKVHFEICRLPEAINIPLSELLSKAAE--------------------LKSL-QEL   65 (122)
T ss_pred             ccccCHHHHHHHHhCCCCeEEEEcCCHHHhhcccCCCCeEccHHHHhhhhhh--------------------hhhh-hhc
Confidence            457999999999876 578999999999999999999999999886532100                    0000 001


Q ss_pred             HhcCCCCCcEEEEcCCCCCCCCCCCCCCchhhHHHHHHHHHHHCCC-CceEEccccHHHHHhCCCCC
Q 026302          171 ESQLDKDAKIIVACATGGTMKPSQNLPEGQQSRSLIAAYLLVLNGY-KNVYHLEGGLYKWFKEELPE  236 (240)
Q Consensus       171 ~~~i~~~~~IVvyC~~G~~~~~~~~~~~~~~~rs~~aa~~L~~~G~-~nV~~l~GG~~~W~~~g~pv  236 (240)
                      ...++++++|||||++|.              ||..++..|+..|| ++|++|+||+.+|..+..+.
T Consensus        66 ~~~~~~~~~ivv~C~~G~--------------rs~~aa~~L~~~G~~~~v~~l~GG~~~W~~~~~~~  118 (122)
T cd01526          66 PLDNDKDSPIYVVCRRGN--------------DSQTAVRKLKELGLERFVRDIIGGLKAWADKVDPT  118 (122)
T ss_pred             ccccCCCCcEEEECCCCC--------------cHHHHHHHHHHcCCccceeeecchHHHHHHHhCcc
Confidence            124688999999999998              99999999999999 79999999999999887654

This CD includes several putative molybdopterin synthase sulfurylases including the molybdenum cofactor biosynthetic protein (CnxF) of Aspergillus nidulans and the molybdenum cofactor synthesis protein 3 (MOCS3) of Homo sapiens. These rhodanese-like domains are found C-terminal of the ThiF and MoeZ_MoeB domains.

>cd01528 RHOD_2 Member of the Rhodanese Homology Domain superfamily, subgroup 2

Probab=99.85  E-value=9.4e-21  Score=143.69  Aligned_cols=96  Identities=29%  Similarity=0.549  Sum_probs=81.5

Q ss_pred             ccHHHHHHHhcCC--CeEEEEcCChhhhhhCCCCCCeeechhhHHhhhhHHHHHHHhhhhhcccCCCCCCcHHHHHHHHh
Q 026302           95 VEAKEALRLQKEN--NFVILDVRPEAEFKEAHPPGAINVQIYRLIKEWTAWDIARRAAFAFFGIFSGTEENPEFLQSVES  172 (240)
Q Consensus        95 Is~~el~~~l~~~--~~~lIDvR~~~ey~~ghIpGAinip~~~l~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~  172 (240)
                      |+++++.++++.+  +.+|||+|++.||..+|||||+|+|+..+...                           +..+ .
T Consensus         2 i~~~~l~~~~~~~~~~~~iiDvR~~~e~~~~hI~ga~~ip~~~~~~~---------------------------~~~~-~   53 (101)
T cd01528           2 ISVAELAEWLADEREEPVLIDVREPEELEIAFLPGFLHLPMSEIPER---------------------------SKEL-D   53 (101)
T ss_pred             CCHHHHHHHHhcCCCCCEEEECCCHHHHhcCcCCCCEecCHHHHHHH---------------------------HHHh-c
Confidence            7889999998865  58999999999999999999999999765421                           2222 1


Q ss_pred             cCCCCCcEEEEcCCCCCCCCCCCCCCchhhHHHHHHHHHHHCCCCceEEccccHHHHHhC
Q 026302          173 QLDKDAKIIVACATGGTMKPSQNLPEGQQSRSLIAAYLLVLNGYKNVYHLEGGLYKWFKE  232 (240)
Q Consensus       173 ~i~~~~~IVvyC~~G~~~~~~~~~~~~~~~rs~~aa~~L~~~G~~nV~~l~GG~~~W~~~  232 (240)
                      ..+++++||+||++|.              +|..++..|.+.||++|++|+||+.+|...
T Consensus        54 ~~~~~~~vv~~c~~g~--------------rs~~~~~~l~~~G~~~v~~l~GG~~~w~~~   99 (101)
T cd01528          54 SDNPDKDIVVLCHHGG--------------RSMQVAQWLLRQGFENVYNLQGGIDAWSLE   99 (101)
T ss_pred             ccCCCCeEEEEeCCCc--------------hHHHHHHHHHHcCCccEEEecCCHHHHhhh
Confidence            2257899999999987              999999999999999999999999999764

Subgroup 2 includes uncharacterized putative rhodanese-related domains.

>cd01534 4RHOD_Repeat_3 Member of the Rhodanese Homology Domain superfamily, repeat 3

Probab=99.85  E-value=8.1e-21  Score=142.63  Aligned_cols=92  Identities=30%  Similarity=0.406  Sum_probs=77.1

Q ss_pred             ccHHHHHHHhcCC--CeEEEEcCChhhhhhCCCCCCeeechhhHHhhhhHHHHHHHhhhhhcccCCCCCCcHHHHHHHHh
Q 026302           95 VEAKEALRLQKEN--NFVILDVRPEAEFKEAHPPGAINVQIYRLIKEWTAWDIARRAAFAFFGIFSGTEENPEFLQSVES  172 (240)
Q Consensus        95 Is~~el~~~l~~~--~~~lIDvR~~~ey~~ghIpGAinip~~~l~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~  172 (240)
                      |+++|+.++++++  +++|||||++.||..||||||+|+|+..+....                           ..+  
T Consensus         1 is~~~l~~~~~~~~~~~~liDvR~~~e~~~ghipga~~ip~~~l~~~~---------------------------~~~--   51 (95)
T cd01534           1 IGAAELARWAAEGDRTVYRFDVRTPEEYEAGHLPGFRHTPGGQLVQET---------------------------DHF--   51 (95)
T ss_pred             CCHHHHHHHHHcCCCCeEEEECCCHHHHHhCCCCCcEeCCHHHHHHHH---------------------------HHh--
Confidence            5788999988764  578999999999999999999999987654321                           011  


Q ss_pred             cCCCCCcEEEEcCCCCCCCCCCCCCCchhhHHHHHHHHHHHCCCCceEEccccHHHHH
Q 026302          173 QLDKDAKIIVACATGGTMKPSQNLPEGQQSRSLIAAYLLVLNGYKNVYHLEGGLYKWF  230 (240)
Q Consensus       173 ~i~~~~~IVvyC~~G~~~~~~~~~~~~~~~rs~~aa~~L~~~G~~nV~~l~GG~~~W~  230 (240)
                      ...++++||+||.+|.              ||..++..|+.+||+ |++|+||+.+|.
T Consensus        52 ~~~~~~~iv~~c~~G~--------------rs~~aa~~L~~~G~~-v~~l~GG~~~W~   94 (95)
T cd01534          52 APVRGARIVLADDDGV--------------RADMTASWLAQMGWE-VYVLEGGLAAAL   94 (95)
T ss_pred             cccCCCeEEEECCCCC--------------hHHHHHHHHHHcCCE-EEEecCcHHHhc
Confidence            1135789999999998              899999999999999 999999999996

This CD includes putative rhodanese-related sulfurtransferases which contain 4 copies of the Rhodanese Homology Domain. This CD aligns the 3rd repeat which does not contain the putative catalytic Cys residue.

>cd01444 GlpE_ST GlpE sulfurtransferase (ST) and homologs are members of the Rhodanese Homology Domain superfamily

Probab=99.84  E-value=1.1e-20  Score=141.17  Aligned_cols=91  Identities=32%  Similarity=0.467  Sum_probs=80.6

Q ss_pred             ccHHHHHHHhcC-CCeEEEEcCChhhhhh--CCCCCCeeechhhHHhhhhHHHHHHHhhhhhcccCCCCCCcHHHHHHHH
Q 026302           95 VEAKEALRLQKE-NNFVILDVRPEAEFKE--AHPPGAINVQIYRLIKEWTAWDIARRAAFAFFGIFSGTEENPEFLQSVE  171 (240)
Q Consensus        95 Is~~el~~~l~~-~~~~lIDvR~~~ey~~--ghIpGAinip~~~l~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~  171 (240)
                      |+++++.++++. .+++|||||++.||..  ||||||+|+|+..+...                               .
T Consensus         2 i~~~~~~~~~~~~~~~~ivDvR~~~e~~~~~~hi~ga~~ip~~~~~~~-------------------------------~   50 (96)
T cd01444           2 ISVDELAELLAAGEAPVLLDVRDPASYAALPDHIPGAIHLDEDSLDDW-------------------------------L   50 (96)
T ss_pred             cCHHHHHHHHhcCCCcEEEECCCHHHHhcccCCCCCCeeCCHHHHHHH-------------------------------H
Confidence            788899998876 4689999999999999  99999999999865321                               1


Q ss_pred             hcCCCCCcEEEEcCCCCCCCCCCCCCCchhhHHHHHHHHHHHCCCCceEEccccHHHHH
Q 026302          172 SQLDKDAKIIVACATGGTMKPSQNLPEGQQSRSLIAAYLLVLNGYKNVYHLEGGLYKWF  230 (240)
Q Consensus       172 ~~i~~~~~IVvyC~~G~~~~~~~~~~~~~~~rs~~aa~~L~~~G~~nV~~l~GG~~~W~  230 (240)
                      ..++++++|||||.+|.              +|..++..|+..||++|++|+||+.+|.
T Consensus        51 ~~~~~~~~ivv~c~~g~--------------~s~~a~~~l~~~G~~~v~~l~gG~~~w~   95 (96)
T cd01444          51 GDLDRDRPVVVYCYHGN--------------SSAQLAQALREAGFTDVRSLAGGFEAWR   95 (96)
T ss_pred             hhcCCCCCEEEEeCCCC--------------hHHHHHHHHHHcCCceEEEcCCCHHHhc
Confidence            34789999999999887              9999999999999999999999999996

Unlike other rhodanese sulfurtransferases, GlpE is a single domain protein but indications are that it functions as a dimer. The active site contains a catalytically active cysteine.

>cd01449 TST_Repeat_2 Thiosulfate sulfurtransferase (TST), C-terminal, catalytic domain

Probab=99.84  E-value=3.3e-21  Score=149.52  Aligned_cols=104  Identities=32%  Similarity=0.526  Sum_probs=83.0

Q ss_pred             ccHHHHHHHhcCCCeEEEEcCChhhhhh-----------CCCCCCeeechhhHHhhhhHHHHHHHhhhhhcccCCCCCCc
Q 026302           95 VEAKEALRLQKENNFVILDVRPEAEFKE-----------AHPPGAINVQIYRLIKEWTAWDIARRAAFAFFGIFSGTEEN  163 (240)
Q Consensus        95 Is~~el~~~l~~~~~~lIDvR~~~ey~~-----------ghIpGAinip~~~l~~~~~~~~~~~~~~~~~~g~~~~~~~~  163 (240)
                      ++++++.+++++++.+|||||++.||..           ||||||+|+|+..+....              +.+.    .
T Consensus         1 ~s~~~l~~~l~~~~~~iiDvR~~~e~~~~~~~~~~~~~~ghIpgA~~~p~~~~~~~~--------------~~~~----~   62 (118)
T cd01449           1 VTAEEVLANLDSGDVQLVDARSPERFRGEVPEPRPGLRSGHIPGAVNIPWTSLLDED--------------GTFK----S   62 (118)
T ss_pred             CCHHHHHHhcCCCCcEEEeCCCHHHcCCcCCCCCCCCcCCcCCCCcccChHHhcCCC--------------CCcC----C
Confidence            5788999998776799999999999987           999999999997654210              1111    1


Q ss_pred             HHHHHHHHh--cCCCCCcEEEEcCCCCCCCCCCCCCCchhhHHHHHHHHHHHCCCCceEEccccHHHHH
Q 026302          164 PEFLQSVES--QLDKDAKIIVACATGGTMKPSQNLPEGQQSRSLIAAYLLVLNGYKNVYHLEGGLYKWF  230 (240)
Q Consensus       164 ~~~~~~~~~--~i~~~~~IVvyC~~G~~~~~~~~~~~~~~~rs~~aa~~L~~~G~~nV~~l~GG~~~W~  230 (240)
                      ++.+.+...  +++++++||+||++|.              +|.++++.|+.+||++|++|+||+.+|.
T Consensus        63 ~~~~~~~~~~~~~~~~~~iv~yc~~g~--------------~s~~~~~~l~~~G~~~v~~l~GG~~~W~  117 (118)
T cd01449          63 PEELRALFAALGITPDKPVIVYCGSGV--------------TACVLLLALELLGYKNVRLYDGSWSEWG  117 (118)
T ss_pred             HHHHHHHHHHcCCCCCCCEEEECCcHH--------------HHHHHHHHHHHcCCCCeeeeCChHHHhc
Confidence            222222222  5679999999999987              9999999999999999999999999996

TST contains 2 copies of the Rhodanese Homology Domain; this is the second repeat. Only the second repeat contains the catalytically active Cys residue.

>TIGR03865 PQQ_CXXCW PQQ-dependent catabolism-associated CXXCW motif protein

Probab=99.84  E-value=7.7e-21  Score=157.14  Aligned_cols=115  Identities=24%  Similarity=0.319  Sum_probs=87.7

Q ss_pred             hcCccccHHHHHHHhcCCCeEEEEcCChh----hhhhC---------CCCCCeeechhhHHhhhhHHHHHHHhhhhhccc
Q 026302           90 KRVRSVEAKEALRLQKENNFVILDVRPEA----EFKEA---------HPPGAINVQIYRLIKEWTAWDIARRAAFAFFGI  156 (240)
Q Consensus        90 ~~~~~Is~~el~~~l~~~~~~lIDvR~~~----ey~~g---------hIpGAinip~~~l~~~~~~~~~~~~~~~~~~g~  156 (240)
                      ..+..|+++|+.+++++++.+|||||++.    ||..|         |||||+|+|+..... +                
T Consensus        33 ~~~~~vs~~el~~~l~~~~~~lIDVR~~~~~~~e~~~G~~~~~~~~~HIPGAv~ip~~~~~~-l----------------   95 (162)
T TIGR03865        33 KGARVLDTEAAQALLARGPVALIDVYPRPPKPKNLLEGTVWRDEPRLNIPGSLWLPNTGYGN-L----------------   95 (162)
T ss_pred             CCccccCHHHHHHHHhCCCcEEEECCCCccccccccccceeccccCCCCCCcEEecccCCCC-C----------------
Confidence            44568999999999988889999999876    46544         999999999632111 0                


Q ss_pred             CCCCCCcHHHHHHHHh--cCCCCCcEEEEcCCCCCCCCCCCCCCchhhHHHHHHHHHHHCCCCceEEccccHHHHHhCCC
Q 026302          157 FSGTEENPEFLQSVES--QLDKDAKIIVACATGGTMKPSQNLPEGQQSRSLIAAYLLVLNGYKNVYHLEGGLYKWFKEEL  234 (240)
Q Consensus       157 ~~~~~~~~~~~~~~~~--~i~~~~~IVvyC~~G~~~~~~~~~~~~~~~rs~~aa~~L~~~G~~nV~~l~GG~~~W~~~g~  234 (240)
                       .. ...+.|.+.+.+  ..+++++|||||.+|.             .+|..+++.|+.+||+||++|+||+.+|..+|+
T Consensus        96 -~~-~~~~~~~~~l~~~~~~~~d~~IVvYC~~G~-------------~~S~~aa~~L~~~G~~~V~~l~GG~~aW~~aG~  160 (162)
T TIGR03865        96 -AP-AWQAYFRRGLERATGGDKDRPLVFYCLADC-------------WMSWNAAKRALAYGYSNVYWYPDGTDGWQAAGL  160 (162)
T ss_pred             -CC-chhHHHHHHHHHhcCCCCCCEEEEEECCCC-------------HHHHHHHHHHHhcCCcceEEecCCHHHHHHcCC
Confidence             00 001123333322  2379999999999875             279999999999999999999999999999999


Q ss_pred             CC
Q 026302          235 PE  236 (240)
Q Consensus       235 pv  236 (240)
                      |+
T Consensus       161 Pv  162 (162)
T TIGR03865       161 PL  162 (162)
T ss_pred             CC
Confidence            86

Members of this protein family have a CXXXCW motif, consistent with a possible role in redox cofactor binding. This protein family shows strong relationships by phylogenetic profiling and conserved gene neighborhoods with a transport system for alcohols metabolized by PQQ-dependent enzymes.

>cd01447 Polysulfide_ST Polysulfide-sulfurtransferase - Rhodanese Homology Domain

Probab=99.84  E-value=8.3e-21  Score=143.43  Aligned_cols=102  Identities=26%  Similarity=0.384  Sum_probs=81.8

Q ss_pred             ccHHHHHHHhcCCCeEEEEcCChhhh-hhCCCCCCeeechhhHHhhhhHHHHHHHhhhhhcccCCCCCCcHHHHHHHHhc
Q 026302           95 VEAKEALRLQKENNFVILDVRPEAEF-KEAHPPGAINVQIYRLIKEWTAWDIARRAAFAFFGIFSGTEENPEFLQSVESQ  173 (240)
Q Consensus        95 Is~~el~~~l~~~~~~lIDvR~~~ey-~~ghIpGAinip~~~l~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~  173 (240)
                      |+++++.+++++++.+|||+|++.+| ..||||||+|+|+..+.... .+.                   ..+   ....
T Consensus         1 is~~el~~~~~~~~~~iiDvR~~~~~~~~ghIpga~~ip~~~~~~~~-~~~-------------------~~~---~~~~   57 (103)
T cd01447           1 LSPEDARALLGSPGVLLVDVRDPRELERTGMIPGAFHAPRGMLEFWA-DPD-------------------SPY---HKPA   57 (103)
T ss_pred             CCHHHHHHHHhCCCeEEEECCCHHHHHhcCCCCCcEEcccchhhhhc-Ccc-------------------ccc---cccC
Confidence            57889999888778899999999998 57999999999986543210 000                   000   0124


Q ss_pred             CCCCCcEEEEcCCCCCCCCCCCCCCchhhHHHHHHHHHHHCCCCceEEccccHHHHHhCC
Q 026302          174 LDKDAKIIVACATGGTMKPSQNLPEGQQSRSLIAAYLLVLNGYKNVYHLEGGLYKWFKEE  233 (240)
Q Consensus       174 i~~~~~IVvyC~~G~~~~~~~~~~~~~~~rs~~aa~~L~~~G~~nV~~l~GG~~~W~~~g  233 (240)
                      ++++++|||||.+|.              +|..+++.|+.+||++|++|+||+.+|..+|
T Consensus        58 ~~~~~~ivv~c~~g~--------------~s~~~~~~l~~~G~~~v~~l~Gg~~~w~~~g  103 (103)
T cd01447          58 FAEDKPFVFYCASGW--------------RSALAGKTLQDMGLKPVYNIEGGFKDWKEAG  103 (103)
T ss_pred             CCCCCeEEEEcCCCC--------------cHHHHHHHHHHcChHHhEeecCcHHHHhhcC
Confidence            789999999999987              8999999999999999999999999998765

This domain is believed to serve as a polysulfide binding and transferase domain in anaerobic gram-negative bacteria, functioning in oxidative phosphorylation with polysulfide-sulfur as a terminal electron acceptor. The active site contains the same conserved cysteine that is the catalytic residue in other Rhodanese Homology Domain proteins.

>cd01524 RHOD_Pyr_redox Member of the Rhodanese Homology Domain superfamily

Probab=99.84  E-value=1.9e-20  Score=139.25  Aligned_cols=89  Identities=37%  Similarity=0.576  Sum_probs=77.5

Q ss_pred             ccHHHHHHHhcCCCeEEEEcCChhhhhhCCCCCCeeechhhHHhhhhHHHHHHHhhhhhcccCCCCCCcHHHHHHHHhcC
Q 026302           95 VEAKEALRLQKENNFVILDVRPEAEFKEAHPPGAINVQIYRLIKEWTAWDIARRAAFAFFGIFSGTEENPEFLQSVESQL  174 (240)
Q Consensus        95 Is~~el~~~l~~~~~~lIDvR~~~ey~~ghIpGAinip~~~l~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~i  174 (240)
                      ++++|+.++++ ++.+|||+|++.+|..||||||+|+|+.++...                               ...+
T Consensus         1 ~~~~e~~~~~~-~~~~iiD~R~~~~~~~~hipgA~~ip~~~~~~~-------------------------------~~~~   48 (90)
T cd01524           1 VQWHELDNYRA-DGVTLIDVRTPQEFEKGHIKGAINIPLDELRDR-------------------------------LNEL   48 (90)
T ss_pred             CCHHHHHHHhc-CCCEEEECCCHHHHhcCCCCCCEeCCHHHHHHH-------------------------------HHhc
Confidence            46888999884 478899999999999999999999998765321                               1246


Q ss_pred             CCCCcEEEEcCCCCCCCCCCCCCCchhhHHHHHHHHHHHCCCCceEEccccHHHHH
Q 026302          175 DKDAKIIVACATGGTMKPSQNLPEGQQSRSLIAAYLLVLNGYKNVYHLEGGLYKWF  230 (240)
Q Consensus       175 ~~~~~IVvyC~~G~~~~~~~~~~~~~~~rs~~aa~~L~~~G~~nV~~l~GG~~~W~  230 (240)
                      +++++||+||++|.              ++..++..|+..|| +|++|+||+.+|.
T Consensus        49 ~~~~~vvl~c~~g~--------------~a~~~a~~L~~~G~-~v~~l~GG~~~w~   89 (90)
T cd01524          49 PKDKEIIVYCAVGL--------------RGYIAARILTQNGF-KVKNLDGGYKTYS   89 (90)
T ss_pred             CCCCcEEEEcCCCh--------------hHHHHHHHHHHCCC-CEEEecCCHHHhc
Confidence            78899999999987              89999999999999 8999999999996

Included in this CD are the Lactococcus lactis NADH oxidase, Bacillus cereus NADH dehydrogenase, and Bacteroides thetaiotaomicron pyridine nucleotide-disulphide oxidoreductase, and similar rhodanese-like domains found C-terminal of the pyridine nucleotide-disulphide oxidoreductase (Pyr-redox) domain and the Pyr-redox dimerization domain.

>cd01525 RHOD_Kc Member of the Rhodanese Homology Domain superfamily

Probab=99.83  E-value=1.8e-20  Score=142.58  Aligned_cols=102  Identities=21%  Similarity=0.372  Sum_probs=78.7

Q ss_pred             ccHHHHHHHhcCC--CeEEEEcCChhhhhhCCCCCCeeechhhHHhhhhHHHHHHHhhhhhcccCCCCCCcHHHHHHHHh
Q 026302           95 VEAKEALRLQKEN--NFVILDVRPEAEFKEAHPPGAINVQIYRLIKEWTAWDIARRAAFAFFGIFSGTEENPEFLQSVES  172 (240)
Q Consensus        95 Is~~el~~~l~~~--~~~lIDvR~~~ey~~ghIpGAinip~~~l~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~  172 (240)
                      |+++|+.++++++  +++|||||++.||..||||||+|+|+..+......              +   ...+. ...+  
T Consensus         1 is~~~l~~~l~~~~~~~~liDvR~~~e~~~ghIpgA~~ip~~~~~~~~~~--------------~---~~~~~-~~~~--   60 (105)
T cd01525           1 ISVYDVIRLLDNSPAKLAAVDIRSSPDFRRGHIEGSINIPFSSVFLKEGE--------------L---EQLPT-VPRL--   60 (105)
T ss_pred             CCHHHHHHHHhCCCCCeEEEECCCHHHHhCCccCCCEeCCHHHhcccccc--------------c---ccccc-hHHH--
Confidence            6889999998764  68999999999999999999999999765321000              0   00010 1111  


Q ss_pred             cCCCCCcEEEEcCCCCCCCCCCCCCCchhhHHHHHHHHHHHCCCCceEEccccHHHHH
Q 026302          173 QLDKDAKIIVACATGGTMKPSQNLPEGQQSRSLIAAYLLVLNGYKNVYHLEGGLYKWF  230 (240)
Q Consensus       173 ~i~~~~~IVvyC~~G~~~~~~~~~~~~~~~rs~~aa~~L~~~G~~nV~~l~GG~~~W~  230 (240)
                      ...++++||+||.+|.              +|..+++.|+.+||++|++|+||+.+|+
T Consensus        61 ~~~~~~~vv~~c~~g~--------------~s~~~a~~L~~~G~~~v~~l~GG~~a~~  104 (105)
T cd01525          61 ENYKGKIIVIVSHSHK--------------HAALFAAFLVKCGVPRVCILDGGINALK  104 (105)
T ss_pred             HhhcCCeEEEEeCCCc--------------cHHHHHHHHHHcCCCCEEEEeCcHHHhc
Confidence            1124789999999997              8999999999999999999999999995

Included in this CD are the rhodanese-like domains found C-terminal of the serine/threonine protein kinases catalytic (S_TKc) domain and the Tre-2, BUB2p, Cdc16p (TBC) domain. The putative active site Cys residue is not present in this CD.

>PF00581 Rhodanese: Rhodanese-like domain This Prosite entry represents a subset of this family

Probab=99.83  E-value=4.5e-20  Score=140.49  Aligned_cols=108  Identities=32%  Similarity=0.543  Sum_probs=81.6

Q ss_pred             cHHHHHHHhcCCCeEEEEcCChhhhhhCCCCCCeeechhhHHhhhhHHHHHHHhhhhhcccCCCCCCcHHHHHHHHhcCC
Q 026302           96 EAKEALRLQKENNFVILDVRPEAEFKEAHPPGAINVQIYRLIKEWTAWDIARRAAFAFFGIFSGTEENPEFLQSVESQLD  175 (240)
Q Consensus        96 s~~el~~~l~~~~~~lIDvR~~~ey~~ghIpGAinip~~~l~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~i~  175 (240)
                      |++|+.+++++++++|||+|++.+|..||||||+|+|+..+.....               ......+.+........++
T Consensus         1 s~~el~~~l~~~~~~liD~R~~~~~~~~hI~ga~~i~~~~~~~~~~---------------~~~~~~~~~~~~~~~~~~~   65 (113)
T PF00581_consen    1 SPEELKEMLENESVLLIDVRSPEEYERGHIPGAVNIPFPSLDPDEP---------------SLSEDKLDEFLKELGKKID   65 (113)
T ss_dssp             -HHHHHHHHTTTTEEEEEESSHHHHHHSBETTEEEEEGGGGSSSSS---------------BCHHHHHHHHHHHHTHGST
T ss_pred             CHHHHHhhhhCCCeEEEEeCCHHHHHcCCCCCCccccccccccccc---------------ccccccccccccccccccc
Confidence            6889999997678999999999999999999999999965410000               0000112333444445679


Q ss_pred             CCCcEEEEcCCCCCCCCCCCCCCchhhHHHHHHHH-----HHHCCCCceEEccccHHHHHhC
Q 026302          176 KDAKIIVACATGGTMKPSQNLPEGQQSRSLIAAYL-----LVLNGYKNVYHLEGGLYKWFKE  232 (240)
Q Consensus       176 ~~~~IVvyC~~G~~~~~~~~~~~~~~~rs~~aa~~-----L~~~G~~nV~~l~GG~~~W~~~  232 (240)
                      ++++|||||..|.              ++..++..     |..+||++|++|+|||.+|.++
T Consensus        66 ~~~~iv~yc~~~~--------------~~~~~~~~~~~~~l~~~g~~~v~~l~GG~~~w~~~  113 (113)
T PF00581_consen   66 KDKDIVFYCSSGW--------------RSGSAAAARVAWILKKLGFKNVYILDGGFEAWKAE  113 (113)
T ss_dssp             TTSEEEEEESSSC--------------HHHHHHHHHHHHHHHHTTTSSEEEETTHHHHHHHH
T ss_pred             ccccceeeeeccc--------------ccchhHHHHHHHHHHHcCCCCEEEecChHHHHhcC
Confidence            9999999998876              66666555     8999999999999999999863

; InterPro: IPR001763 Rhodanese, a sulphurtransferase involved in cyanide detoxification (see IPR001307 from INTERPRO) shares evolutionary relationship with a large family of proteins [], including Cdc25 phosphatase catalytic domain. non-catalytic domains of eukaryotic dual-specificity MAPK-phosphatases. non-catalytic domains of yeast PTP-type MAPK-phosphatases. non-catalytic domains of yeast Ubp4, Ubp5, Ubp7. non-catalytic domains of mammalian Ubp-Y. Drosophila heat shock protein HSP-67BB. several bacterial cold-shock and phage shock proteins. plant senescence associated proteins. catalytic and non-catalytic domains of rhodanese (see IPR001307 from INTERPRO). Rhodanese has an internal duplication. This domain is found as a single copy in other proteins, including phosphatases and ubiquitin C-terminal hydrolases [].; PDB: 2J6P_D 2FSX_A 1UAR_A 1OKG_A 1GMX_A 1GN0_A 3NTD_B 3NTA_B 3NT6_A 1C25_A ....

>cd01522 RHOD_1 Member of the Rhodanese Homology Domain superfamily, subgroup 1

Probab=99.83  E-value=1.8e-20  Score=146.59  Aligned_cols=103  Identities=32%  Similarity=0.484  Sum_probs=85.4

Q ss_pred             ccHHHHHHHhcC-CCeEEEEcCChhhhh-hCCCCCCeeechhhHHhhhhHHHHHHHhhhhhcccCCCCCCcHHHHHHHHh
Q 026302           95 VEAKEALRLQKE-NNFVILDVRPEAEFK-EAHPPGAINVQIYRLIKEWTAWDIARRAAFAFFGIFSGTEENPEFLQSVES  172 (240)
Q Consensus        95 Is~~el~~~l~~-~~~~lIDvR~~~ey~-~ghIpGAinip~~~l~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~  172 (240)
                      |+++++.+++++ ++.+|||||++.||. .||||||+|+|+.++...                     .....+...+..
T Consensus         1 is~~el~~~l~~~~~~~vIDvR~~~e~~~~ghIpgA~~ip~~~~~~~---------------------~~~~~~~~~l~~   59 (117)
T cd01522           1 LTPAEAWALLQADPQAVLVDVRTEAEWKFVGGVPDAVHVAWQVYPDM---------------------EINPNFLAELEE   59 (117)
T ss_pred             CCHHHHHHHHHhCCCeEEEECCCHHHHhcccCCCCceecchhhcccc---------------------ccCHHHHHHHHh
Confidence            578999999987 478999999999999 999999999999765421                     011234444444


Q ss_pred             cCCCCCcEEEEcCCCCCCCCCCCCCCchhhHHHHHHHHHHHCCCCceEEccccHHHHHhC
Q 026302          173 QLDKDAKIIVACATGGTMKPSQNLPEGQQSRSLIAAYLLVLNGYKNVYHLEGGLYKWFKE  232 (240)
Q Consensus       173 ~i~~~~~IVvyC~~G~~~~~~~~~~~~~~~rs~~aa~~L~~~G~~nV~~l~GG~~~W~~~  232 (240)
                      .++++++|||||.+|.              +|..++..|+.+||+||+.|.||+.+|.+.
T Consensus        60 ~~~~~~~ivv~C~~G~--------------rs~~aa~~L~~~G~~~v~~l~gG~~~~~~~  105 (117)
T cd01522          60 KVGKDRPVLLLCRSGN--------------RSIAAAEAAAQAGFTNVYNVLEGFEGDLDA  105 (117)
T ss_pred             hCCCCCeEEEEcCCCc--------------cHHHHHHHHHHCCCCeEEECcCceecCCCC
Confidence            4588999999999997              999999999999999999999999999764

This CD includes the putative rhodanese-related sulfurtransferases of several uncharacterized proteins.

>PRK11493 sseA 3-mercaptopyruvate sulfurtransferase; Provisional

Probab=99.83  E-value=3e-20  Score=165.74  Aligned_cols=121  Identities=21%  Similarity=0.269  Sum_probs=94.0

Q ss_pred             cccHHHHHHHhcCCCeEEEEcCC----------hhhhhhCCCCCCeeechhhHHhhhhHHHHHHHhhhhhcccCCCCCCc
Q 026302           94 SVEAKEALRLQKENNFVILDVRP----------EAEFKEAHPPGAINVQIYRLIKEWTAWDIARRAAFAFFGIFSGTEEN  163 (240)
Q Consensus        94 ~Is~~el~~~l~~~~~~lIDvR~----------~~ey~~ghIpGAinip~~~l~~~~~~~~~~~~~~~~~~g~~~~~~~~  163 (240)
                      .|+++++.+++++++++|||+|+          +.+|..||||||+|+|+..+.....          .+.+.++....+
T Consensus         6 lvs~~~l~~~l~~~~~~iiD~R~~~~~~~~~~~~~~y~~GHIpGA~~~~~~~~~~~~~----------~~~~~~~~~~~~   75 (281)
T PRK11493          6 FVAADWLAEHIDDPEIQIIDARMAPPGQEDRDVAAEYRAGHIPGAVFFDIEALSDHTS----------PLPHMMPRPETF   75 (281)
T ss_pred             ccCHHHHHHhcCCCCeEEEEeeCCCCCccccchHHHHHhCcCCCCEEcCHHHhcCCCC----------CCCCCCCCHHHH
Confidence            58999999999988899999997          6899999999999999866432110          001111122223


Q ss_pred             HHHHHHHHhcCCCCCcEEEEcCCCCCCCCCCCCCCchhhHHHHHHHHHHHCCCCceEEccccHHHHHhCCCCCccC
Q 026302          164 PEFLQSVESQLDKDAKIIVACATGGTMKPSQNLPEGQQSRSLIAAYLLVLNGYKNVYHLEGGLYKWFKEELPEVSE  239 (240)
Q Consensus       164 ~~~~~~~~~~i~~~~~IVvyC~~G~~~~~~~~~~~~~~~rs~~aa~~L~~~G~~nV~~l~GG~~~W~~~g~pv~~~  239 (240)
                      .++++++  +++++++|||||.++..             .+.++++.|+.+||+||++|+||+.+|.++|+|++++
T Consensus        76 ~~~~~~~--Gi~~d~~VVvyc~~~~~-------------~a~~~~~~l~~~G~~~v~~l~GG~~~W~~~g~p~~~~  136 (281)
T PRK11493         76 AVAMREL--GVNQDKHLVVYDEGNLF-------------SAPRAWWMLRTFGVEKVSILAGGLAGWQRDDLLLEEG  136 (281)
T ss_pred             HHHHHHc--CCCCCCEEEEECCCCCc-------------hHHHHHHHHHHhcCCcEEEcCCCHHHHHHcCCCccCC
Confidence            3344443  68999999999998762             5778999999999999999999999999999999875

>PLN02723 3-mercaptopyruvate sulfurtransferase

Probab=99.82  E-value=3e-20  Score=168.89  Aligned_cols=122  Identities=19%  Similarity=0.252  Sum_probs=96.3

Q ss_pred             ccccHHHHHHHhcCCCeEEEEcC--------C-hhhhhhCCCCCCeeechhhHHhhhhHHHHHHHhhhhhcccCCCCCCc
Q 026302           93 RSVEAKEALRLQKENNFVILDVR--------P-EAEFKEAHPPGAINVQIYRLIKEWTAWDIARRAAFAFFGIFSGTEEN  163 (240)
Q Consensus        93 ~~Is~~el~~~l~~~~~~lIDvR--------~-~~ey~~ghIpGAinip~~~l~~~~~~~~~~~~~~~~~~g~~~~~~~~  163 (240)
                      ..|++++|.+++++++++|||+|        . ..+|..||||||+|+++..+.....          ...++++..+.+
T Consensus        22 ~lvs~~~L~~~l~~~~~~IiDvr~~~~~~~r~~~~~y~~gHIPgAi~i~~~~~~~~~~----------~~~~~lp~~~~~   91 (320)
T PLN02723         22 PVVSVDWLHANLREPDVKVLDASWYMPDEQRNPIQEYQVAHIPGALFFDLDGISDRTT----------DLPHMLPSEEAF   91 (320)
T ss_pred             ceecHHHHHHHhcCCCeEEEEeeccccCCCCchHHHHHhccCCCCeecCHHHhcCCCC----------CcCCCCCCHHHH
Confidence            36999999999988889999996        3 3789999999999999876543210          011233333344


Q ss_pred             HHHHHHHHhcCCCCCcEEEEcCCCCCCCCCCCCCCchhhHHHHHHHHHHHCCCCceEEccccHHHHHhCCCCCccC
Q 026302          164 PEFLQSVESQLDKDAKIIVACATGGTMKPSQNLPEGQQSRSLIAAYLLVLNGYKNVYHLEGGLYKWFKEELPEVSE  239 (240)
Q Consensus       164 ~~~~~~~~~~i~~~~~IVvyC~~G~~~~~~~~~~~~~~~rs~~aa~~L~~~G~~nV~~l~GG~~~W~~~g~pv~~~  239 (240)
                      .+++.++  +++++++|||||..|.             ..+.++++.|+.+||+||++|+||+.+|.++|+|++++
T Consensus        92 ~~~l~~~--Gi~~~~~VVvY~~~g~-------------~~a~r~~~~L~~~G~~~V~~LdGG~~~W~~~G~pv~~~  152 (320)
T PLN02723         92 AAAVSAL--GIENKDGVVVYDGKGI-------------FSAARVWWMFRVFGHEKVWVLDGGLPKWRASGYDVESS  152 (320)
T ss_pred             HHHHHHc--CCCCCCEEEEEcCCCc-------------chHHHHHHHHHHcCCCceEEcCCCHHHHHHcCCCcccC
Confidence            4555544  6889999999999886             26788999999999999999999999999999999864

>smart00450 RHOD Rhodanese Homology Domain

Probab=99.82  E-value=4.6e-20  Score=136.40  Aligned_cols=97  Identities=39%  Similarity=0.665  Sum_probs=77.3

Q ss_pred             CCeEEEEcCChhhhhhCCCCCCeeechhhHHhhhhHHHHHHHhhhhhcccCCCCCCcHHHHHHH-HhcCCCCCcEEEEcC
Q 026302          107 NNFVILDVRPEAEFKEAHPPGAINVQIYRLIKEWTAWDIARRAAFAFFGIFSGTEENPEFLQSV-ESQLDKDAKIIVACA  185 (240)
Q Consensus       107 ~~~~lIDvR~~~ey~~ghIpGAinip~~~l~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~-~~~i~~~~~IVvyC~  185 (240)
                      ++++|||+|++.||..||||||+|+|+..+........                  ...+.... ...++++++|||||.
T Consensus         3 ~~~~ivDvR~~~e~~~~hi~ga~~i~~~~~~~~~~~~~------------------~~~~~~~~~~~~~~~~~~iv~~c~   64 (100)
T smart00450        3 EKVVLLDVRSPEEYEGGHIPGAVNIPLSELLDRRGELD------------------ILEFEELLKRLGLDKDKPVVVYCR   64 (100)
T ss_pred             CCEEEEECCCHHHhccCCCCCceeCCHHHhccCCCCcC------------------HHHHHHHHHHcCCCCCCeEEEEeC
Confidence            47899999999999999999999999987654321000                  00111111 136789999999998


Q ss_pred             CCCCCCCCCCCCCchhhHHHHHHHHHHHCCCCceEEccccHHHHHhCCCC
Q 026302          186 TGGTMKPSQNLPEGQQSRSLIAAYLLVLNGYKNVYHLEGGLYKWFKEELP  235 (240)
Q Consensus       186 ~G~~~~~~~~~~~~~~~rs~~aa~~L~~~G~~nV~~l~GG~~~W~~~g~p  235 (240)
                      +|.              ++..+++.|+..||++|++|+||+.+|...|.|
T Consensus        65 ~g~--------------~a~~~~~~l~~~G~~~v~~l~GG~~~w~~~~~~  100 (100)
T smart00450       65 SGN--------------RSAKAAWLLRELGFKNVYLLDGGYKEWSAAGPP  100 (100)
T ss_pred             CCc--------------HHHHHHHHHHHcCCCceEEecCCHHHHHhcCCC
Confidence            887              999999999999999999999999999999875

An alpha beta fold found duplicated in the Rhodanese protein. The the Cysteine containing enzymatically active version of the domain is also found in the CDC25 class of protein phosphatases and a variety of proteins such as sulfide dehydrogenases and stress proteins such as Senesence specific protein 1 in plants, PspE and GlpE in bacteria and cyanide and arsenate resistance proteins. Inactive versions with a loss of the cysteine are also seen in Dual specificity phosphatases, ubiquitin hydrolases from yeast and in sulfuryltransferases. These are likely to play a role in protein interactions.

>cd01530 Cdc25 Cdc25 phosphatases are members of the Rhodanese Homology Domain superfamily

Probab=99.82  E-value=5.9e-20  Score=144.74  Aligned_cols=98  Identities=26%  Similarity=0.401  Sum_probs=80.2

Q ss_pred             ccccHHHHHHHhcCC------CeEEEEcCChhhhhhCCCCCCeeechh-hHHhhhhHHHHHHHhhhhhcccCCCCCCcHH
Q 026302           93 RSVEAKEALRLQKEN------NFVILDVRPEAEFKEAHPPGAINVQIY-RLIKEWTAWDIARRAAFAFFGIFSGTEENPE  165 (240)
Q Consensus        93 ~~Is~~el~~~l~~~------~~~lIDvR~~~ey~~ghIpGAinip~~-~l~~~~~~~~~~~~~~~~~~g~~~~~~~~~~  165 (240)
                      ..|+++++.++++++      +++|||||++.||..||||||+|+|+. .+...+                         
T Consensus         2 ~~Is~~el~~~l~~~~~~~~~~~~liDvR~~~e~~~ghI~gA~~ip~~~~l~~~~-------------------------   56 (121)
T cd01530           2 KRISPETLARLLQGKYDNFFDKYIIIDCRFPYEYNGGHIKGAVNLSTKDELEEFF-------------------------   56 (121)
T ss_pred             CccCHHHHHHHHhcccccCCCCEEEEECCCHHHHhCCcCCCCEeCCcHHHHHHHH-------------------------
Confidence            469999999998763      689999999999999999999999986 343221                         


Q ss_pred             HHHH-HHhcCCCCCcEEEEcC-CCCCCCCCCCCCCchhhHHHHHHHHHHHC------------CCCceEEccccHHHHH
Q 026302          166 FLQS-VESQLDKDAKIIVACA-TGGTMKPSQNLPEGQQSRSLIAAYLLVLN------------GYKNVYHLEGGLYKWF  230 (240)
Q Consensus       166 ~~~~-~~~~i~~~~~IVvyC~-~G~~~~~~~~~~~~~~~rs~~aa~~L~~~------------G~~nV~~l~GG~~~W~  230 (240)
                       .+. ....++++++|||||. +|.              ||..+++.|+..            ||++|++|+||+.+|.
T Consensus        57 -~~~~~~~~~~~~~~vv~yC~~sg~--------------rs~~aa~~L~~~~~~~~~~~~~~~g~~~v~~L~GG~~~f~  120 (121)
T cd01530          57 -LDKPGVASKKKRRVLIFHCEFSSK--------------RGPRMARHLRNLDRELNSNRYPLLYYPEIYILEGGYKNFF  120 (121)
T ss_pred             -HHhhcccccCCCCEEEEECCCccc--------------cHHHHHHHHHHHhhhhccccCCCCCCCeEEEEcChhHhhc
Confidence             000 0014789999999997 887              999999999984            9999999999999984

They activate the cell division kinases throughout the cell cycle progression. Cdc25 phosphatases dephosphorylate phosphotyrosine and phosphothreonine residues, in order to activate their Cdk/cyclin substrates. Cdc25A phosphatase functions to regulate S phase entry and Cdc25B is required for G2/M phase transition of the cell cycle. The Cdc25 domain binds oxyanions at the catalytic site and has the signature motif (H/YCxxxxxR).

>cd01529 4RHOD_Repeats Member of the Rhodanese Homology Domain superfamily

Probab=99.82  E-value=6.3e-20  Score=137.91  Aligned_cols=87  Identities=28%  Similarity=0.408  Sum_probs=71.9

Q ss_pred             CCCeEEEEcCChhhhhhCCCCCCeeechhhHHhhhhHHHHHHHhhhhhcccCCCCCCcHHHHHHHHhcCCCCCcEEEEcC
Q 026302          106 ENNFVILDVRPEAEFKEAHPPGAINVQIYRLIKEWTAWDIARRAAFAFFGIFSGTEENPEFLQSVESQLDKDAKIIVACA  185 (240)
Q Consensus       106 ~~~~~lIDvR~~~ey~~ghIpGAinip~~~l~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~i~~~~~IVvyC~  185 (240)
                      +++++|||||++.||..||||||+|+|+..+...                        .+.++.+ ..++++++|||||.
T Consensus        10 ~~~~~iiDvR~~~~~~~~hIpgA~~ip~~~~~~~------------------------~~~~~~~-~~~~~~~~ivv~c~   64 (96)
T cd01529          10 EPGTALLDVRAEDEYAAGHLPGKRSIPGAALVLR------------------------SQELQAL-EAPGRATRYVLTCD   64 (96)
T ss_pred             CCCeEEEeCCCHHHHcCCCCCCcEeCCHHHhcCC------------------------HHHHHHh-hcCCCCCCEEEEeC
Confidence            4578999999999999999999999998765321                        1112222 34688999999999


Q ss_pred             CCCCCCCCCCCCCchhhHHHHHHHHHHHCCCCceEEccccHHHHHh
Q 026302          186 TGGTMKPSQNLPEGQQSRSLIAAYLLVLNGYKNVYHLEGGLYKWFK  231 (240)
Q Consensus       186 ~G~~~~~~~~~~~~~~~rs~~aa~~L~~~G~~nV~~l~GG~~~W~~  231 (240)
                      +|.              ++..++..|+..||+||++|+||+.+|.+
T Consensus        65 ~g~--------------~s~~~~~~l~~~G~~~v~~l~GG~~~W~~   96 (96)
T cd01529          65 GSL--------------LARFAAQELLALGGKPVALLDGGTSAWVA   96 (96)
T ss_pred             ChH--------------HHHHHHHHHHHcCCCCEEEeCCCHHHhcC
Confidence            987              89999999999999999999999999963

This CD includes putative rhodanese-related sulfurtransferases which contain 4 copies of the Rhodanese Homology Domain. Only the second and most of the fourth repeats contain the putative catalytic Cys residue. This CD aligns the 1st , 2nd, 3rd, and 4th repeats.

>PRK01415 hypothetical protein; Validated

Probab=99.82  E-value=7.6e-20  Score=160.31  Aligned_cols=135  Identities=24%  Similarity=0.340  Sum_probs=109.3

Q ss_pred             EeecCcchhhhhccccCCCCcceeeccCCCCCCCCCCchhhHHHHHHHhhhcCccccHHHHHHHhcCCCeEEEEcCChhh
Q 026302           40 CLTVRSFTFSRRRLSSQSVPRGLIIQNAATKPAKSPAEEDWKTKRELLLQKRVRSVEAKEALRLQKENNFVILDVRPEAE  119 (240)
Q Consensus        40 ~~~~rs~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~Is~~el~~~l~~~~~~lIDvR~~~e  119 (240)
                      +.....+..++.|+++..++.|+.-    ..|...                ....|+++++.+++++++++|||||++.|
T Consensus        79 ~~~~~~F~~l~vr~k~eiV~~g~~~----~~~~~~----------------~g~~i~p~e~~~ll~~~~~vvIDVRn~~E  138 (247)
T PRK01415         79 YSDVHPFQKLKVRLKKEIVAMNVDD----LNVDLF----------------KGEYIEPKDWDEFITKQDVIVIDTRNDYE  138 (247)
T ss_pred             cccCCCCCccEEEeeceEEecCCCC----CCcccc----------------CccccCHHHHHHHHhCCCcEEEECCCHHH
Confidence            3455678889999999999999842    111111                12479999999999988999999999999


Q ss_pred             hhhCCCCCCeeechhhHHhhhhHHHHHHHhhhhhcccCCCCCCcHHHHHHHHhcCCCCCcEEEEcCCCCCCCCCCCCCCc
Q 026302          120 FKEAHPPGAINVQIYRLIKEWTAWDIARRAAFAFFGIFSGTEENPEFLQSVESQLDKDAKIIVACATGGTMKPSQNLPEG  199 (240)
Q Consensus       120 y~~ghIpGAinip~~~l~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~i~~~~~IVvyC~~G~~~~~~~~~~~~  199 (240)
                      |..||||||+|+|+..+.+.                        ++.++.. ..++++++|++||.+|.           
T Consensus       139 ~~~Ghi~gAinip~~~f~e~------------------------~~~~~~~-~~~~k~k~Iv~yCtgGi-----------  182 (247)
T PRK01415        139 VEVGTFKSAINPNTKTFKQF------------------------PAWVQQN-QELLKGKKIAMVCTGGI-----------  182 (247)
T ss_pred             HhcCCcCCCCCCChHHHhhh------------------------HHHHhhh-hhhcCCCeEEEECCCCh-----------
Confidence            99999999999998776431                        2222222 35689999999999998           


Q ss_pred             hhhHHHHHHHHHHHCCCCceEEccccHHHHHhCC
Q 026302          200 QQSRSLIAAYLLVLNGYKNVYHLEGGLYKWFKEE  233 (240)
Q Consensus       200 ~~~rs~~aa~~L~~~G~~nV~~l~GG~~~W~~~g  233 (240)
                         ||..++..|++.||++|++|.||+.+|.+..
T Consensus       183 ---Rs~kAa~~L~~~Gf~~Vy~L~GGi~~w~~~~  213 (247)
T PRK01415        183 ---RCEKSTSLLKSIGYDEVYHLKGGILQYLEDT  213 (247)
T ss_pred             ---HHHHHHHHHHHcCCCcEEEechHHHHHHHhc
Confidence               9999999999999999999999999999764

>cd01535 4RHOD_Repeat_4 Member of the Rhodanese Homology Domain superfamily, repeat 4

Probab=99.82  E-value=8.8e-20  Score=148.21  Aligned_cols=95  Identities=26%  Similarity=0.346  Sum_probs=80.7

Q ss_pred             HHHHhcCC-CeEEEEcCChhhhhhCCCCCCeeechhhHHhhhhHHHHHHHhhhhhcccCCCCCCcHHHHHHHHhcCCCCC
Q 026302          100 ALRLQKEN-NFVILDVRPEAEFKEAHPPGAINVQIYRLIKEWTAWDIARRAAFAFFGIFSGTEENPEFLQSVESQLDKDA  178 (240)
Q Consensus       100 l~~~l~~~-~~~lIDvR~~~ey~~ghIpGAinip~~~l~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~i~~~~  178 (240)
                      +.+++.++ +++|||||++.+|..||||||+|+|...+....                               ..++++.
T Consensus         2 l~~~l~~~~~~~ivDvR~~~e~~~gHIpgAi~~~~~~l~~~l-------------------------------~~l~~~~   50 (145)
T cd01535           2 LAAWLGEGGQTAVVDVTASANYVKRHIPGAWWVLRAQLAQAL-------------------------------EKLPAAE   50 (145)
T ss_pred             hHHHHhCCCCeEEEECCCHHHHHcCCCCCceeCCHHHHHHHH-------------------------------HhcCCCC
Confidence            34455443 589999999999999999999999986654321                               3466789


Q ss_pred             cEEEEcCCCCCCCCCCCCCCchhhHHHHHHHHHHHCCCCceEEccccHHHHHhCCCCCccC
Q 026302          179 KIIVACATGGTMKPSQNLPEGQQSRSLIAAYLLVLNGYKNVYHLEGGLYKWFKEELPEVSE  239 (240)
Q Consensus       179 ~IVvyC~~G~~~~~~~~~~~~~~~rs~~aa~~L~~~G~~nV~~l~GG~~~W~~~g~pv~~~  239 (240)
                      +|||||.+|.              +|..++..|+..||++|++|+||+.+|...|+|++++
T Consensus        51 ~vVv~c~~g~--------------~a~~aa~~L~~~G~~~v~~L~GG~~aW~~~g~pl~~~   97 (145)
T cd01535          51 RYVLTCGSSL--------------LARFAAADLAALTVKPVFVLEGGTAAWIAAGLPVESG   97 (145)
T ss_pred             CEEEEeCCCh--------------HHHHHHHHHHHcCCcCeEEecCcHHHHHHCCCCcccC
Confidence            9999999986              8999999999999999999999999999999999864

This CD includes putative rhodanese-related sulfurtransferases which contain 4 copies of the Rhodanese Homology Domain. This CD aligns the 4th repeat which, in general, contains the putative catalytic Cys residue.

>cd01445 TST_Repeats Thiosulfate sulfurtransferases (TST) contain 2 copies of the Rhodanese Homology Domain

Probab=99.81  E-value=1.1e-19  Score=146.36  Aligned_cols=110  Identities=23%  Similarity=0.337  Sum_probs=83.9

Q ss_pred             ccHHHHHHHhc----CCCeEEEEcCCh--------hhhhh------------CCCCCCeeechhhHHhhhhHHHHHHHhh
Q 026302           95 VEAKEALRLQK----ENNFVILDVRPE--------AEFKE------------AHPPGAINVQIYRLIKEWTAWDIARRAA  150 (240)
Q Consensus        95 Is~~el~~~l~----~~~~~lIDvR~~--------~ey~~------------ghIpGAinip~~~l~~~~~~~~~~~~~~  150 (240)
                      |+++|+.+.++    +++++|||+|..        .+|..            ||||||+|+|+..+.... .        
T Consensus         1 vs~e~l~~~l~~~~~~~~~~iiD~r~~~~~~~~~~~~y~~~~~~~~~~~~~~GHIPgAv~~~~~~~~~~~-~--------   71 (138)
T cd01445           1 KSTEQLAENLEAGKVGKGFQLLDARAQSPGTREARGEYLETQPEPDAVGLDSGHIPGASFFDFEECLDEA-G--------   71 (138)
T ss_pred             CCHHHHHHHhhccccCCCeEEEEccCCCccCcchhhhhcccCCCCCcCCCcCCcCCCCEeeCHHHhhCcC-C--------
Confidence            57899999988    457999999987        88998            999999999987653210 0        


Q ss_pred             hhhcccCCCCCCcHHHHHHHHhcCCCCCcEEEEcCC---CCCCCCCCCCCCchhhHHHHHHHHHHHCCCCceEEccccHH
Q 026302          151 FAFFGIFSGTEENPEFLQSVESQLDKDAKIIVACAT---GGTMKPSQNLPEGQQSRSLIAAYLLVLNGYKNVYHLEGGLY  227 (240)
Q Consensus       151 ~~~~g~~~~~~~~~~~~~~~~~~i~~~~~IVvyC~~---G~~~~~~~~~~~~~~~rs~~aa~~L~~~G~~nV~~l~GG~~  227 (240)
                       .+.+.++...++.+++.++  +++++++|||||.+   |.              .|.++++.|+.+|++||++|+||+.
T Consensus        72 -~~~~~~p~~~~~~~~~~~~--GI~~~~~vVvY~~~~~~g~--------------~A~r~~~~l~~~G~~~v~ildGG~~  134 (138)
T cd01445          72 -FEESMEPSEAEFAAMFEAK--GIDLDKHLIATDGDDLGGF--------------TACHIALAARLCGHPDVAILDGGFF  134 (138)
T ss_pred             -CCCCCCCCHHHHHHHHHHc--CCCCCCeEEEECCCCCcch--------------HHHHHHHHHHHcCCCCeEEeCCCHH
Confidence             0112222222334444443  78999999999986   44              8999999999999999999999999


Q ss_pred             HHH
Q 026302          228 KWF  230 (240)
Q Consensus       228 ~W~  230 (240)
                      +|+
T Consensus       135 ~W~  137 (138)
T cd01445         135 EWF  137 (138)
T ss_pred             Hhh
Confidence            996

Only the second repeat contains the catalytically active Cys residue. The role of the 1st repeat is uncertain, but believed to be involved in protein interaction. This CD aligns the 1st and 2nd repeats.

>PRK09629 bifunctional thiosulfate sulfurtransferase/phosphatidylserine decarboxylase; Provisional

Probab=99.81  E-value=1.2e-19  Score=177.32  Aligned_cols=121  Identities=21%  Similarity=0.296  Sum_probs=98.2

Q ss_pred             cccHHHHHHHhcCCCeEEEEcCChhhhhhCCCCCCeeechhhHHhhhhHHHHHHHhhhhhcccCCCCCCcHHHHHHHHhc
Q 026302           94 SVEAKEALRLQKENNFVILDVRPEAEFKEAHPPGAINVQIYRLIKEWTAWDIARRAAFAFFGIFSGTEENPEFLQSVESQ  173 (240)
Q Consensus        94 ~Is~~el~~~l~~~~~~lIDvR~~~ey~~ghIpGAinip~~~l~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~  173 (240)
                      .|+++||.+++++++++|||+|++.+|..||||||+|+|++.+....          -...++++...++.+.+.++  +
T Consensus        10 lIs~~eL~~~l~~~~vvIIDvR~~~eY~~GHIPGAv~i~~~~~~~~~----------~~~~~~lp~~~~l~~~l~~l--G   77 (610)
T PRK09629         10 VIEPNDLLERLDAPELILVDLTSSARYEAGHIRGARFVDPKRTQLGK----------PPAPGLLPDTADLEQLFGEL--G   77 (610)
T ss_pred             eecHHHHHHHhcCCCEEEEECCChHHHHhCCCCCcEEcChhHhhccC----------CCCCCCCCCHHHHHHHHHHc--C
Confidence            59999999999988899999999999999999999999986532110          01123333333445555554  6


Q ss_pred             CCCCCcEEEEcCCCCCCCCCCCCCCchhhHHHHHHHHHHHCCCCceEEccccHHHHHhCCCCCccC
Q 026302          174 LDKDAKIIVACATGGTMKPSQNLPEGQQSRSLIAAYLLVLNGYKNVYHLEGGLYKWFKEELPEVSE  239 (240)
Q Consensus       174 i~~~~~IVvyC~~G~~~~~~~~~~~~~~~rs~~aa~~L~~~G~~nV~~l~GG~~~W~~~g~pv~~~  239 (240)
                      ++++++|||||+.|.             .+|.++++.|+.+||++|++|+||+.+|..+|+|++++
T Consensus        78 I~~d~~VVvYd~~g~-------------~~A~R~~w~L~~~G~~~V~iLdGG~~aW~~ag~p~~~~  130 (610)
T PRK09629         78 HNPDAVYVVYDDEGG-------------GWAGRFIWLLDVIGHSGYHYLDGGVLAWEAQALPLSTD  130 (610)
T ss_pred             CCCCCEEEEECCCCC-------------chHHHHHHHHHHcCCCCEEEcCCCHHHHHHcCCccccC
Confidence            899999999999875             27889999999999999999999999999999999765

>PLN02723 3-mercaptopyruvate sulfurtransferase

Probab=99.80  E-value=1.6e-19  Score=164.09  Aligned_cols=116  Identities=20%  Similarity=0.312  Sum_probs=92.5

Q ss_pred             cccHHHHHHHhcCCCeEEEEcCChhhh-----------hhCCCCCCeeechhhHHhhhhHHHHHHHhhhhhcccCCCCCC
Q 026302           94 SVEAKEALRLQKENNFVILDVRPEAEF-----------KEAHPPGAINVQIYRLIKEWTAWDIARRAAFAFFGIFSGTEE  162 (240)
Q Consensus        94 ~Is~~el~~~l~~~~~~lIDvR~~~ey-----------~~ghIpGAinip~~~l~~~~~~~~~~~~~~~~~~g~~~~~~~  162 (240)
                      .++.+++.+.+..++++|||+|++.||           ..||||||+|+|+..+.+.              .+.+...++
T Consensus       191 ~~~~~~v~~~~~~~~~~iiD~R~~~ef~G~~~~~~~~~~~GHIPgAvnip~~~~~~~--------------~~~~~~~~e  256 (320)
T PLN02723        191 VWTLEQVKKNIEDKTYQHIDARSKARFDGAAPEPRKGIRSGHIPGSKCVPFPQMLDS--------------SQTLLPAEE  256 (320)
T ss_pred             eecHHHHHHhhcCCCeEEEECCCcccccCCCCCCCCCCcCCcCCCCcccCHHHhcCC--------------CCCCCCHHH
Confidence            478999999998778899999999988           4699999999999765432              122222222


Q ss_pred             cHHHHHHHHhcCCCCCcEEEEcCCCCCCCCCCCCCCchhhHHHHHHHHHHHCCCCceEEccccHHHHHhC-CCCCccC
Q 026302          163 NPEFLQSVESQLDKDAKIIVACATGGTMKPSQNLPEGQQSRSLIAAYLLVLNGYKNVYHLEGGLYKWFKE-ELPEVSE  239 (240)
Q Consensus       163 ~~~~~~~~~~~i~~~~~IVvyC~~G~~~~~~~~~~~~~~~rs~~aa~~L~~~G~~nV~~l~GG~~~W~~~-g~pv~~~  239 (240)
                      +.+.+.+  .+++++++||+||++|.              +|..+++.|+.+||+||++|+|||.+|... .+|++++
T Consensus       257 l~~~~~~--~gi~~~~~iv~yC~sG~--------------~A~~~~~~L~~~G~~~v~~YdGs~~eW~~~~~~Pv~~~  318 (320)
T PLN02723        257 LKKRFEQ--EGISLDSPIVASCGTGV--------------TACILALGLHRLGKTDVPVYDGSWTEWGALPDTPVATS  318 (320)
T ss_pred             HHHHHHh--cCCCCCCCEEEECCcHH--------------HHHHHHHHHHHcCCCCeeEeCCCHHHHhcCCCCCccCC
Confidence            2222222  26899999999999997              999999999999999999999999999976 6799875

>cd01532 4RHOD_Repeat_1 Member of the Rhodanese Homology Domain superfamily, repeat 1

Probab=99.79  E-value=4.2e-19  Score=132.86  Aligned_cols=88  Identities=33%  Similarity=0.457  Sum_probs=71.0

Q ss_pred             HHhcCCCeEEEEcCChhhhhhCCCCCCeeechhhHHhhhhHHHHHHHhhhhhcccCCCCCCcHHHHHHHHhcC-CCCCcE
Q 026302          102 RLQKENNFVILDVRPEAEFKEAHPPGAINVQIYRLIKEWTAWDIARRAAFAFFGIFSGTEENPEFLQSVESQL-DKDAKI  180 (240)
Q Consensus       102 ~~l~~~~~~lIDvR~~~ey~~ghIpGAinip~~~l~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~i-~~~~~I  180 (240)
                      .++++++++|||+|++.||..||||||+|+|+..+....                             . ..+ +++++|
T Consensus         4 ~~~~~~~~~liDvR~~~e~~~~hi~ga~~ip~~~~~~~~-----------------------------~-~~~~~~~~~i   53 (92)
T cd01532           4 ALLAREEIALIDVREEDPFAQSHPLWAANLPLSRLELDA-----------------------------W-VRIPRRDTPI   53 (92)
T ss_pred             HhhcCCCeEEEECCCHHHHhhCCcccCeeCCHHHHHhhh-----------------------------H-hhCCCCCCeE
Confidence            345566899999999999999999999999987653210                             0 123 458899


Q ss_pred             EEEcCCCCCCCCCCCCCCchhhHHHHHHHHHHHCCCCceEEccccHHHHHh
Q 026302          181 IVACATGGTMKPSQNLPEGQQSRSLIAAYLLVLNGYKNVYHLEGGLYKWFK  231 (240)
Q Consensus       181 VvyC~~G~~~~~~~~~~~~~~~rs~~aa~~L~~~G~~nV~~l~GG~~~W~~  231 (240)
                      ||||.+|.+            ..|..++..|+..||++|++|+||+.+|.+
T Consensus        54 vl~c~~G~~------------~~s~~aa~~L~~~G~~~v~~l~GG~~~W~~   92 (92)
T cd01532          54 VVYGEGGGE------------DLAPRAARRLSELGYTDVALLEGGLQGWRA   92 (92)
T ss_pred             EEEeCCCCc------------hHHHHHHHHHHHcCccCEEEccCCHHHHcC
Confidence            999999872            127899999999999999999999999963

This CD includes putative rhodanese-related sulfurtransferases which contain 4 copies of the Rhodanese Homology Domain. This CD aligns the 1st repeat which does not contain the putative catalytic Cys residue.

>cd01531 Acr2p Eukaryotic arsenate resistance proteins are members of the Rhodanese Homology Domain superfamily

Probab=99.79  E-value=6.7e-19  Score=136.32  Aligned_cols=101  Identities=21%  Similarity=0.341  Sum_probs=79.0

Q ss_pred             ccccHHHHHHHhcC--CCeEEEEcCChhhhhhCCCCCCeeechhhHHhhhhHHHHHHHhhhhhcccCCCCCCcHHHHHHH
Q 026302           93 RSVEAKEALRLQKE--NNFVILDVRPEAEFKEAHPPGAINVQIYRLIKEWTAWDIARRAAFAFFGIFSGTEENPEFLQSV  170 (240)
Q Consensus        93 ~~Is~~el~~~l~~--~~~~lIDvR~~~ey~~ghIpGAinip~~~l~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~  170 (240)
                      +.|+++++.+++..  ++.+|||||++ ||..||||||+|+|+..+....                       .++.+..
T Consensus         2 ~~is~~~l~~~~~~~~~~~~iiDvR~~-e~~~~hi~gA~~ip~~~l~~~~-----------------------~~~~~~~   57 (113)
T cd01531           2 SYISPAQLKGWIRNGRPPFQVVDVRDE-DYAGGHIKGSWHYPSTRFKAQL-----------------------NQLVQLL   57 (113)
T ss_pred             CcCCHHHHHHHHHcCCCCEEEEEcCCc-ccCCCcCCCCEecCHHHHhhCH-----------------------HHHHHHH
Confidence            57899999999876  35789999999 9999999999999998765322                       2222222


Q ss_pred             HhcCCCCCcEEEEcCCCCCCCCCCCCCCchhhHHHHHHHHHHH--------CCCCceEEccccHHHHHhC
Q 026302          171 ESQLDKDAKIIVACATGGTMKPSQNLPEGQQSRSLIAAYLLVL--------NGYKNVYHLEGGLYKWFKE  232 (240)
Q Consensus       171 ~~~i~~~~~IVvyC~~G~~~~~~~~~~~~~~~rs~~aa~~L~~--------~G~~nV~~l~GG~~~W~~~  232 (240)
                        ..+++++|||||..++.             |+..++..|.+        .||.||++|+||+.+|.+.
T Consensus        58 --~~~~~~~iv~yC~~~~~-------------r~~~aa~~l~~~~~~~~~~~G~~~v~~l~gG~~~w~~~  112 (113)
T cd01531          58 --SGSKKDTVVFHCALSQV-------------RGPSAARKFLRYLDEEDLETSKFEVYVLHGGFNAWESS  112 (113)
T ss_pred             --hcCCCCeEEEEeecCCc-------------chHHHHHHHHHHHHHhccccCCCeEEEEcChHHHHHhh
Confidence              34778899999984431             78888777643        4999999999999999864

Included in this CD is the Saccharomyces cerevisiae arsenate reductase protein, Acr2p, and other yeast and plant homologs.

>PRK11493 sseA 3-mercaptopyruvate sulfurtransferase; Provisional

Probab=99.79  E-value=2.1e-19  Score=160.30  Aligned_cols=113  Identities=27%  Similarity=0.448  Sum_probs=89.8

Q ss_pred             cccHHHHHHHhcCCCeEEEEcCChhhhh-----------hCCCCCCeeechhhHHhhhhHHHHHHHhhhhhcccCCCCCC
Q 026302           94 SVEAKEALRLQKENNFVILDVRPEAEFK-----------EAHPPGAINVQIYRLIKEWTAWDIARRAAFAFFGIFSGTEE  162 (240)
Q Consensus        94 ~Is~~el~~~l~~~~~~lIDvR~~~ey~-----------~ghIpGAinip~~~l~~~~~~~~~~~~~~~~~~g~~~~~~~  162 (240)
                      .++.+++...++.++++|||+|++.||.           .||||||+|+|+..+.+.               +.+    .
T Consensus       154 ~~~~~~v~~~~~~~~~~llD~R~~~e~~G~~~~~~~~~~~GhIpgA~~i~~~~~~~~---------------~~~----~  214 (281)
T PRK11493        154 VVRLTDVLLASHEKTAQIVDARPAARFNAEVDEPRPGLRRGHIPGALNVPWTELVRE---------------GEL----K  214 (281)
T ss_pred             eecHHHHHHhhcCCCcEEEeCCCccceeeeccCCCCCcccccCCCcCCCCHHHhcCC---------------CCc----C
Confidence            3566777777776678999999999995           699999999999876431               011    1


Q ss_pred             cHHHHHHHH--hcCCCCCcEEEEcCCCCCCCCCCCCCCchhhHHHHHHHHHHHCCCCceEEccccHHHHHh-CCCCCccC
Q 026302          163 NPEFLQSVE--SQLDKDAKIIVACATGGTMKPSQNLPEGQQSRSLIAAYLLVLNGYKNVYHLEGGLYKWFK-EELPEVSE  239 (240)
Q Consensus       163 ~~~~~~~~~--~~i~~~~~IVvyC~~G~~~~~~~~~~~~~~~rs~~aa~~L~~~G~~nV~~l~GG~~~W~~-~g~pv~~~  239 (240)
                      .++-++++.  .+++++++||+||++|.              +|..+++.|+.+||+||++|+|||.+|.. .++|++++
T Consensus       215 ~~~~l~~~~~~~g~~~~~~ii~yC~~G~--------------~A~~~~~~l~~~G~~~v~~y~Gs~~eW~~~~~~P~~~~  280 (281)
T PRK11493        215 TTDELDAIFFGRGVSFDRPIIASCGSGV--------------TAAVVVLALATLDVPNVKLYDGAWSEWGARADLPVEPA  280 (281)
T ss_pred             CHHHHHHHHHhcCCCCCCCEEEECCcHH--------------HHHHHHHHHHHcCCCCceeeCCCHHHHccCCCCCcCCC
Confidence            122222221  36899999999999998              99999999999999999999999999998 69999876

>COG2897 SseA Rhodanese-related sulfurtransferase [Inorganic ion transport and metabolism]

Probab=99.79  E-value=3.3e-19  Score=159.08  Aligned_cols=115  Identities=25%  Similarity=0.412  Sum_probs=97.5

Q ss_pred             cccHHHHHHHhcCCCeEEEEcCChhhhhh----------CCCCCCeeechhhHHhhhhHHHHHHHhhhhhcccCCCCCCc
Q 026302           94 SVEAKEALRLQKENNFVILDVRPEAEFKE----------AHPPGAINVQIYRLIKEWTAWDIARRAAFAFFGIFSGTEEN  163 (240)
Q Consensus        94 ~Is~~el~~~l~~~~~~lIDvR~~~ey~~----------ghIpGAinip~~~l~~~~~~~~~~~~~~~~~~g~~~~~~~~  163 (240)
                      .++.++.+..++.+..+|||+|++++|..          ||||||+|+|+..+.++-              +.    ...
T Consensus       157 ~~~~~~~~~~~~~~~~~liDaR~~~rf~G~~~ep~~~~~GHIPGAiNipw~~~~~~~--------------~~----~~~  218 (285)
T COG2897         157 VVDATLVADALEVPAVLLIDARSPERFRGKEPEPRDGKAGHIPGAINIPWTDLVDDG--------------GL----FKS  218 (285)
T ss_pred             cCCHHHHHHHhcCCCeEEEecCCHHHhCCCCCCCCCCCCCCCCCCcCcCHHHHhcCC--------------Cc----cCc
Confidence            57888888888888899999999999998          999999999999886521              11    233


Q ss_pred             HHHHHHHH--hcCCCCCcEEEEcCCCCCCCCCCCCCCchhhHHHHHHHHHHHCCCCceEEccccHHHHHhC-CCCCccCC
Q 026302          164 PEFLQSVE--SQLDKDAKIIVACATGGTMKPSQNLPEGQQSRSLIAAYLLVLNGYKNVYHLEGGLYKWFKE-ELPEVSEE  240 (240)
Q Consensus       164 ~~~~~~~~--~~i~~~~~IVvyC~~G~~~~~~~~~~~~~~~rs~~aa~~L~~~G~~nV~~l~GG~~~W~~~-g~pv~~~~  240 (240)
                      ++.++.+.  .+++++++||+||.+|.              +|+..+..|+.+|+.++++|+|+|.+|... +.||++++
T Consensus       219 ~~~~~~l~~~~gi~~~~~vI~yCgsG~--------------~As~~~~al~~lg~~~~~lYdGSWsEWg~~~~~PV~~g~  284 (285)
T COG2897         219 PEEIARLYADAGIDPDKEVIVYCGSGV--------------RASVTWLALAELGGPNNRLYDGSWSEWGSDPDRPVETGE  284 (285)
T ss_pred             HHHHHHHHHhcCCCCCCCEEEEcCCch--------------HHHHHHHHHHHhCCCCcccccChHHHhhcCCCCccccCC
Confidence            45555544  47999999999999998              999999999999998889999999999986 56999885

>PRK08762 molybdopterin biosynthesis protein MoeB; Validated

Probab=99.79  E-value=6.7e-19  Score=163.20  Aligned_cols=104  Identities=29%  Similarity=0.399  Sum_probs=90.2

Q ss_pred             CccccHHHHHHHhcCCCeEEEEcCChhhhhhCCCCCCeeechhhHHhhhhHHHHHHHhhhhhcccCCCCCCcHHHHHHHH
Q 026302           92 VRSVEAKEALRLQKENNFVILDVRPEAEFKEAHPPGAINVQIYRLIKEWTAWDIARRAAFAFFGIFSGTEENPEFLQSVE  171 (240)
Q Consensus        92 ~~~Is~~el~~~l~~~~~~lIDvR~~~ey~~ghIpGAinip~~~l~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~  171 (240)
                      +..|+++++.+++++ +.+|||||++.||..||||||+|+|+..+....                           ..+ 
T Consensus         2 v~~is~~el~~~l~~-~~~ivDvR~~~e~~~ghIpgAi~ip~~~l~~~~---------------------------~~~-   52 (376)
T PRK08762          2 IREISPAEARARAAQ-GAVLIDVREAHERASGQAEGALRIPRGFLELRI---------------------------ETH-   52 (376)
T ss_pred             CceeCHHHHHHHHhC-CCEEEECCCHHHHhCCcCCCCEECCHHHHHHHH---------------------------hhh-
Confidence            457999999999976 589999999999999999999999987654221                           111 


Q ss_pred             hcCCCCCcEEEEcCCCCCCCCCCCCCCchhhHHHHHHHHHHHCCCCceEEccccHHHHHhCCCCCccC
Q 026302          172 SQLDKDAKIIVACATGGTMKPSQNLPEGQQSRSLIAAYLLVLNGYKNVYHLEGGLYKWFKEELPEVSE  239 (240)
Q Consensus       172 ~~i~~~~~IVvyC~~G~~~~~~~~~~~~~~~rs~~aa~~L~~~G~~nV~~l~GG~~~W~~~g~pv~~~  239 (240)
                       ..+++++|||||++|.              +|..+++.|+..||+||++|+||+.+|.+.|+|++..
T Consensus        53 -~~~~~~~IvvyC~~G~--------------rs~~aa~~L~~~G~~~v~~l~GG~~~W~~~g~p~~~~  105 (376)
T PRK08762         53 -LPDRDREIVLICASGT--------------RSAHAAATLRELGYTRVASVAGGFSAWKDAGLPLERP  105 (376)
T ss_pred             -cCCCCCeEEEEcCCCc--------------HHHHHHHHHHHcCCCceEeecCcHHHHHhcCCccccc
Confidence             2478999999999997              9999999999999999999999999999999998764

>cd00158 RHOD Rhodanese Homology Domain (RHOD); an alpha beta fold domain found duplicated in the rhodanese protein

Probab=99.79  E-value=4.7e-19  Score=129.30  Aligned_cols=88  Identities=42%  Similarity=0.638  Sum_probs=75.6

Q ss_pred             HHHHhcCCCeEEEEcCChhhhhhCCCCCCeeechhhHHhhhhHHHHHHHhhhhhcccCCCCCCcHHHHHHHHhcCCCCCc
Q 026302          100 ALRLQKENNFVILDVRPEAEFKEAHPPGAINVQIYRLIKEWTAWDIARRAAFAFFGIFSGTEENPEFLQSVESQLDKDAK  179 (240)
Q Consensus       100 l~~~l~~~~~~lIDvR~~~ey~~ghIpGAinip~~~l~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~i~~~~~  179 (240)
                      +..+++.++.+|||+|++.||..||||||+|+|+..+....                             ....++++++
T Consensus         2 ~~~~~~~~~~~iiD~R~~~~~~~~~i~ga~~~~~~~~~~~~-----------------------------~~~~~~~~~~   52 (89)
T cd00158           2 LKELLDDEDAVLLDVREPEEYAAGHIPGAINIPLSELEERA-----------------------------ALLELDKDKP   52 (89)
T ss_pred             hHHHhcCCCeEEEECCCHHHHhccccCCCEecchHHHhhHH-----------------------------HhhccCCCCe
Confidence            34555566899999999999999999999999998765421                             1136789999


Q ss_pred             EEEEcCCCCCCCCCCCCCCchhhHHHHHHHHHHHCCCCceEEccccHHHHH
Q 026302          180 IIVACATGGTMKPSQNLPEGQQSRSLIAAYLLVLNGYKNVYHLEGGLYKWF  230 (240)
Q Consensus       180 IVvyC~~G~~~~~~~~~~~~~~~rs~~aa~~L~~~G~~nV~~l~GG~~~W~  230 (240)
                      |||||..|.              +|..++..|+..||++|++|+||+.+|.
T Consensus        53 vv~~c~~~~--------------~a~~~~~~l~~~G~~~v~~l~gG~~~w~   89 (89)
T cd00158          53 IVVYCRSGN--------------RSARAAKLLRKAGGTNVYNLEGGMLAWK   89 (89)
T ss_pred             EEEEeCCCc--------------hHHHHHHHHHHhCcccEEEecCChhhcC
Confidence            999999987              9999999999999999999999999994

The cysteine containing enzymatically active version of the domain is also found in the Cdc25 class of protein phosphatases and a variety of proteins such as sulfide dehydrogenases and certain stress proteins such as senesence specific protein 1 in plants, PspE and GlpE in bacteria and cyanide and arsenate resistance proteins. Inactive versions (no active site cysteine) are also seen in dual specificity phosphatases, ubiquitin hydrolases from yeast and in sulfuryltransferases, where they are believed to play a regulatory role in multidomain proteins.

>COG0607 PspE Rhodanese-related sulfurtransferase [Inorganic ion transport and metabolism]

Probab=99.78  E-value=1.1e-18  Score=132.81  Aligned_cols=102  Identities=39%  Similarity=0.592  Sum_probs=85.2

Q ss_pred             cHHHHHHHhcCCCeEEEEcCChhhhhhCCCCC-CeeechhhHHhhhhHHHHHHHhhhhhcccCCCCCCcHHHHHHHHhcC
Q 026302           96 EAKEALRLQKENNFVILDVRPEAEFKEAHPPG-AINVQIYRLIKEWTAWDIARRAAFAFFGIFSGTEENPEFLQSVESQL  174 (240)
Q Consensus        96 s~~el~~~l~~~~~~lIDvR~~~ey~~ghIpG-Ainip~~~l~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~i  174 (240)
                      .......+...++.+|||||++.||..+|||| ++|+|+.++.....                           ..  .+
T Consensus         8 ~~~~~~~~~~~~~~~liDvR~~~e~~~~~i~~~~~~ip~~~~~~~~~---------------------------~~--~~   58 (110)
T COG0607           8 SEDEAALLLAGEDAVLLDVREPEEYERGHIPGAAINIPLSELKAAEN---------------------------LL--EL   58 (110)
T ss_pred             CHHHHHHhhccCCCEEEeccChhHhhhcCCCcceeeeecccchhhhc---------------------------cc--cc
Confidence            33444444555689999999999999999999 99999988754310                           00  05


Q ss_pred             CCCCcEEEEcCCCCCCCCCCCCCCchhhHHHHHHHHHHHCCCCceEEccccHHHHHhCCCCCccCC
Q 026302          175 DKDAKIIVACATGGTMKPSQNLPEGQQSRSLIAAYLLVLNGYKNVYHLEGGLYKWFKEELPEVSEE  240 (240)
Q Consensus       175 ~~~~~IVvyC~~G~~~~~~~~~~~~~~~rs~~aa~~L~~~G~~nV~~l~GG~~~W~~~g~pv~~~~  240 (240)
                      +++++|||||.+|.              ||..++..|+++||++++.+.||+.+|...++|++.++
T Consensus        59 ~~~~~ivv~C~~G~--------------rS~~aa~~L~~~G~~~~~~l~gG~~~w~~~~~~~~~~~  110 (110)
T COG0607          59 PDDDPIVVYCASGV--------------RSAAAAAALKLAGFTNVYNLDGGIDAWKGAGLPLVRGY  110 (110)
T ss_pred             CCCCeEEEEeCCCC--------------ChHHHHHHHHHcCCccccccCCcHHHHHhcCCCcccCC
Confidence            78999999999999              99999999999999988999999999999999998753

>cd01443 Cdc25_Acr2p Cdc25 enzymes are members of the Rhodanese Homology Domain (RHOD) superfamily

Probab=99.77  E-value=2.3e-18  Score=133.37  Aligned_cols=99  Identities=23%  Similarity=0.448  Sum_probs=74.7

Q ss_pred             ccccHHHHHHHhcCC------CeEEEEcCChhhhhhCCCCCCeeechhhHHhhhhHHHHHHHhhhhhcccCCCCCCcHHH
Q 026302           93 RSVEAKEALRLQKEN------NFVILDVRPEAEFKEAHPPGAINVQIYRLIKEWTAWDIARRAAFAFFGIFSGTEENPEF  166 (240)
Q Consensus        93 ~~Is~~el~~~l~~~------~~~lIDvR~~~ey~~ghIpGAinip~~~l~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~  166 (240)
                      +.|++++++++++++      +.+|||||++ ||..||||||+|+|+..+....                       ++.
T Consensus         2 ~~is~~el~~~l~~~~~~~~~~~~iiDvR~~-ef~~ghipgAi~ip~~~~~~~~-----------------------~~~   57 (113)
T cd01443           2 KYISPEELVALLENSDSNAGKDFVVVDLRRD-DYEGGHIKGSINLPAQSCYQTL-----------------------PQV   57 (113)
T ss_pred             cccCHHHHHHHHhCCccccCCcEEEEECCch-hcCCCcccCceecchhHHHHHH-----------------------HHH
Confidence            468999999999875      5889999999 9999999999999998754321                       112


Q ss_pred             HHHHHhcCCCCCcEEEEcCCCCCCCCCCCCCCchhhHHHHHHHHHH----HCCC--CceEEccccHHHHH
Q 026302          167 LQSVESQLDKDAKIIVACATGGTMKPSQNLPEGQQSRSLIAAYLLV----LNGY--KNVYHLEGGLYKWF  230 (240)
Q Consensus       167 ~~~~~~~i~~~~~IVvyC~~G~~~~~~~~~~~~~~~rs~~aa~~L~----~~G~--~nV~~l~GG~~~W~  230 (240)
                      +..+  ..++..+||+||.+++.             |+..++.+|.    ..||  .++++|+||+.+|.
T Consensus        58 ~~~~--~~~~~~~iv~~C~~~g~-------------rs~~a~~~l~~~l~~~G~~~~~v~~l~GG~~~w~  112 (113)
T cd01443          58 YALF--SLAGVKLAIFYCGSSQG-------------RGPRAARWFADYLRKVGESLPKSYILTGGIKAWY  112 (113)
T ss_pred             HHHh--hhcCCCEEEEECCCCCc-------------ccHHHHHHHHHHHhccCCCCCeEEEECChhhhhc
Confidence            2221  12456789999997532             7777766544    4575  68999999999996

Also included in this CD are eukaryotic arsenate resistance proteins such as Saccharomyces cerevisiae Acr2p and similar proteins. Cdc25 phosphatases activate the cell division kinases throughout the cell cycle progression. Cdc25 phosphatases dephosphorylate phosphotyrosine and phosphothreonine residues, in order to activate their Cdk/cyclin substrates. The Cdc25 and Acr2p RHOD domains have the signature motif (H/YCxxxxxR).

>PRK05320 rhodanese superfamily protein; Provisional

Probab=99.76  E-value=2.9e-18  Score=151.54  Aligned_cols=103  Identities=32%  Similarity=0.489  Sum_probs=84.7

Q ss_pred             cCccccHHHHHHHhcCC------CeEEEEcCChhhhhhCCCCCCeeechhhHHhhhhHHHHHHHhhhhhcccCCCCCCcH
Q 026302           91 RVRSVEAKEALRLQKEN------NFVILDVRPEAEFKEAHPPGAINVQIYRLIKEWTAWDIARRAAFAFFGIFSGTEENP  164 (240)
Q Consensus        91 ~~~~Is~~el~~~l~~~------~~~lIDvR~~~ey~~ghIpGAinip~~~l~~~~~~~~~~~~~~~~~~g~~~~~~~~~  164 (240)
                      ....|+++++.+++++.      +.+|||||++.||+.||||||+|+|+.++.+ +                       +
T Consensus       108 ~~~~is~~el~~~l~~~~~~~~~~~vlIDVR~~~E~~~Ghi~GAiniPl~~f~~-~-----------------------~  163 (257)
T PRK05320        108 RAPSVDAATLKRWLDQGHDDAGRPVVMLDTRNAFEVDVGTFDGALDYRIDKFTE-F-----------------------P  163 (257)
T ss_pred             cCceeCHHHHHHHHhccccccCCCeEEEECCCHHHHccCccCCCEeCChhHhhh-h-----------------------H
Confidence            34679999999988652      4799999999999999999999999977643 2                       1


Q ss_pred             HHHHHHHhcCCCCCcEEEEcCCCCCCCCCCCCCCchhhHHHHHHHHHHHCCCCceEEccccHHHHHhC
Q 026302          165 EFLQSVESQLDKDAKIIVACATGGTMKPSQNLPEGQQSRSLIAAYLLVLNGYKNVYHLEGGLYKWFKE  232 (240)
Q Consensus       165 ~~~~~~~~~i~~~~~IVvyC~~G~~~~~~~~~~~~~~~rs~~aa~~L~~~G~~nV~~l~GG~~~W~~~  232 (240)
                      ..+......+ ++++||+||.+|.              ||..|+..|++.||+||++|.||+.+|.++
T Consensus       164 ~~l~~~~~~~-kdk~IvvyC~~G~--------------Rs~~Aa~~L~~~Gf~~V~~L~GGi~~w~~~  216 (257)
T PRK05320        164 EALAAHRADL-AGKTVVSFCTGGI--------------RCEKAAIHMQEVGIDNVYQLEGGILKYFEE  216 (257)
T ss_pred             HHHHhhhhhc-CCCeEEEECCCCH--------------HHHHHHHHHHHcCCcceEEeccCHHHHHHh
Confidence            1122222233 7899999999998              999999999999999999999999999875

>PRK00142 putative rhodanese-related sulfurtransferase; Provisional

Probab=99.76  E-value=3.4e-18  Score=155.05  Aligned_cols=131  Identities=24%  Similarity=0.376  Sum_probs=100.9

Q ss_pred             CcchhhhhccccCCCCcceeeccCCCCCCCCCCchhhHHHHHHHhhhcCccccHHHHHHHhcCCCeEEEEcCChhhhhhC
Q 026302           44 RSFTFSRRRLSSQSVPRGLIIQNAATKPAKSPAEEDWKTKRELLLQKRVRSVEAKEALRLQKENNFVILDVRPEAEFKEA  123 (240)
Q Consensus        44 rs~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~Is~~el~~~l~~~~~~lIDvR~~~ey~~g  123 (240)
                      ..+..++.++.+..+.-|+...   ..+..                .....|+++++.+++++++++|||||++.||..|
T Consensus        82 ~~f~~l~~~~~~eLv~~G~d~~---v~~~~----------------~~~~~is~~el~~~l~~~~~vlIDVR~~~E~~~G  142 (314)
T PRK00142         82 HAFPRLSVKVRKEIVALGLDDD---IDPLE----------------NVGTYLKPKEVNELLDDPDVVFIDMRNDYEYEIG  142 (314)
T ss_pred             CCcccceeeeeeeeeecCCCCC---CCccc----------------cCCcccCHHHHHHHhcCCCeEEEECCCHHHHhcC
Confidence            4455566667777777776410   00000                2345799999999998888999999999999999


Q ss_pred             CCCCCeeechhhHHhhhhHHHHHHHhhhhhcccCCCCCCcHHHHHHHHhcCCCCCcEEEEcCCCCCCCCCCCCCCchhhH
Q 026302          124 HPPGAINVQIYRLIKEWTAWDIARRAAFAFFGIFSGTEENPEFLQSVESQLDKDAKIIVACATGGTMKPSQNLPEGQQSR  203 (240)
Q Consensus       124 hIpGAinip~~~l~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~i~~~~~IVvyC~~G~~~~~~~~~~~~~~~r  203 (240)
                      |||||+|+|+..+.+.                        +..+.+. ....++++||+||.+|.              |
T Consensus       143 hI~GAi~ip~~~~~~~------------------------~~~l~~~-~~~~kdk~IvvyC~~G~--------------R  183 (314)
T PRK00142        143 HFENAIEPDIETFREF------------------------PPWVEEN-LDPLKDKKVVMYCTGGI--------------R  183 (314)
T ss_pred             cCCCCEeCCHHHhhhh------------------------HHHHHHh-cCCCCcCeEEEECCCCc--------------H
Confidence            9999999999876432                        1111111 13568899999999998              9


Q ss_pred             HHHHHHHHHHCCCCceEEccccHHHHHhC
Q 026302          204 SLIAAYLLVLNGYKNVYHLEGGLYKWFKE  232 (240)
Q Consensus       204 s~~aa~~L~~~G~~nV~~l~GG~~~W~~~  232 (240)
                      |..++.+|+..||+||++|+||+.+|.+.
T Consensus       184 s~~aa~~L~~~Gf~~V~~L~GGi~~w~~~  212 (314)
T PRK00142        184 CEKASAWMKHEGFKEVYQLEGGIITYGED  212 (314)
T ss_pred             HHHHHHHHHHcCCCcEEEecchHHHHHHh
Confidence            99999999999999999999999999875

>PRK09629 bifunctional thiosulfate sulfurtransferase/phosphatidylserine decarboxylase; Provisional

Probab=99.76  E-value=1.8e-18  Score=169.01  Aligned_cols=116  Identities=21%  Similarity=0.310  Sum_probs=93.5

Q ss_pred             cccHHHHHHHhcCCCeEEEEcCChhhhh--------hCCCCCCeeechhhHHhhhhHHHHHHHhhhhhcccCCCCCCcHH
Q 026302           94 SVEAKEALRLQKENNFVILDVRPEAEFK--------EAHPPGAINVQIYRLIKEWTAWDIARRAAFAFFGIFSGTEENPE  165 (240)
Q Consensus        94 ~Is~~el~~~l~~~~~~lIDvR~~~ey~--------~ghIpGAinip~~~l~~~~~~~~~~~~~~~~~~g~~~~~~~~~~  165 (240)
                      .++.+++.+.+++++++|||+|+++||.        .||||||+|+|+..+...              .+.+...+++.+
T Consensus       148 ~v~~e~v~~~l~~~~~~iIDaR~~~ef~G~~~~~~r~GHIPGAvnip~~~~~~~--------------~~~lk~~~el~~  213 (610)
T PRK09629        148 TATREYLQSRLGAADLAIWDARAPTEYSGEKVVAAKGGHIPGAVNFEWTAGMDK--------------ARNLRIRQDMPE  213 (610)
T ss_pred             cccHHHHHHhhCCCCcEEEECCCccccCCcccccccCCCCCCCeecCHHHhcCC--------------CCCCCCHHHHHH
Confidence            6899999999988788999999999995        799999999998765432              112222223334


Q ss_pred             HHHHHHhcCCCCCcEEEEcCCCCCCCCCCCCCCchhhHHHHHHHHHHHCCCCceEEccccHHHHHhC-CCCCccC
Q 026302          166 FLQSVESQLDKDAKIIVACATGGTMKPSQNLPEGQQSRSLIAAYLLVLNGYKNVYHLEGGLYKWFKE-ELPEVSE  239 (240)
Q Consensus       166 ~~~~~~~~i~~~~~IVvyC~~G~~~~~~~~~~~~~~~rs~~aa~~L~~~G~~nV~~l~GG~~~W~~~-g~pv~~~  239 (240)
                      +++++  +++++++||+||++|.              +|..+++.|+.+||+||++|+|||.+|... ++|+++.
T Consensus       214 ~~~~~--Gi~~~~~VVvYC~sG~--------------rAa~~~~~L~~lG~~~V~~YdGsw~eW~~~~~lPv~~~  272 (610)
T PRK09629        214 ILRDL--GITPDKEVITHCQTHH--------------RSGFTYLVAKALGYPRVKAYAGSWGEWGNHPDTPVEVP  272 (610)
T ss_pred             HHHHc--CCCCCCCEEEECCCCh--------------HHHHHHHHHHHcCCCCcEEeCCCHHHHhCCCCCccccC
Confidence            44333  6899999999999997              999999999999999999999999999875 7898753

>COG2897 SseA Rhodanese-related sulfurtransferase [Inorganic ion transport and metabolism]

Probab=99.75  E-value=6.8e-18  Score=150.67  Aligned_cols=122  Identities=24%  Similarity=0.295  Sum_probs=101.5

Q ss_pred             ccccHHHHHHHhcCC-----CeEEEEcCCh--hhhhhCCCCCCeeechhhHHhhhhHHHHHHHhhhhhcccCCCCCCcHH
Q 026302           93 RSVEAKEALRLQKEN-----NFVILDVRPE--AEFKEAHPPGAINVQIYRLIKEWTAWDIARRAAFAFFGIFSGTEENPE  165 (240)
Q Consensus        93 ~~Is~~el~~~l~~~-----~~~lIDvR~~--~ey~~ghIpGAinip~~~l~~~~~~~~~~~~~~~~~~g~~~~~~~~~~  165 (240)
                      ..|++++|.+.|..+     +..++++++.  .+|..||||||++++++.+.....          ...++++..+.+.+
T Consensus        11 ~lVs~~wl~~~l~~~~~~~~d~~~~~~~~~~~~~Y~~~HIPGAv~~d~~~~~~~~~----------~~~~~lp~~e~fa~   80 (285)
T COG2897          11 FLVSPDWLAENLDDPAVVIVDARIILPDPDDAEEYLEGHIPGAVFFDWEADLSDPV----------PLPHMLPSPEQFAK   80 (285)
T ss_pred             eEEcHHHHHhhccccccccCceEEEeCCcchHHHHHhccCCCCEecCHHHhhcCCC----------CCCCCCCCHHHHHH
Confidence            479999999999866     5666666665  899999999999999988754321          12456666666777


Q ss_pred             HHHHHHhcCCCCCcEEEEcCCCCCCCCCCCCCCchhhHHHHHHHHHHHCCCCceEEccccHHHHHhCCCCCccC
Q 026302          166 FLQSVESQLDKDAKIIVACATGGTMKPSQNLPEGQQSRSLIAAYLLVLNGYKNVYHLEGGLYKWFKEELPEVSE  239 (240)
Q Consensus       166 ~~~~~~~~i~~~~~IVvyC~~G~~~~~~~~~~~~~~~rs~~aa~~L~~~G~~nV~~l~GG~~~W~~~g~pv~~~  239 (240)
                      .+.++  +|..+.+||+|++.+..             .|.++++.|+.+|++||++|+||+.+|.++|+|++++
T Consensus        81 ~~~~~--GI~~d~tVVvYdd~~~~-------------~A~ra~W~l~~~Gh~~V~iLdGG~~~W~~~g~p~~~~  139 (285)
T COG2897          81 LLGEL--GIRNDDTVVVYDDGGGF-------------FAARAWWLLRYLGHENVRILDGGLPAWKAAGLPLETE  139 (285)
T ss_pred             HHHHc--CCCCCCEEEEECCCCCe-------------ehHHHHHHHHHcCCCceEEecCCHHHHHHcCCCccCC
Confidence            77766  89999999999988873             8999999999999999999999999999999999875

>TIGR02981 phageshock_pspE phage shock operon rhodanese PspE

Probab=99.74  E-value=1e-17  Score=128.30  Aligned_cols=81  Identities=23%  Similarity=0.370  Sum_probs=68.8

Q ss_pred             CCeEEEEcCChhhhhhCCCCCCeeechhhHHhhhhHHHHHHHhhhhhcccCCCCCCcHHHHHHHHhcCCCCCcEEEEcCC
Q 026302          107 NNFVILDVRPEAEFKEAHPPGAINVQIYRLIKEWTAWDIARRAAFAFFGIFSGTEENPEFLQSVESQLDKDAKIIVACAT  186 (240)
Q Consensus       107 ~~~~lIDvR~~~ey~~ghIpGAinip~~~l~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~i~~~~~IVvyC~~  186 (240)
                      ....+||+|++.||..||||||+|+|+.++...+                           ..+  ..+++++|||||.+
T Consensus        17 ~~~~lIDvR~~~ef~~ghIpgAinip~~~l~~~l---------------------------~~~--~~~~~~~vvlyC~~   67 (101)
T TIGR02981        17 AAEHWIDVRIPEQYQQEHIQGAINIPLKEIKEHI---------------------------ATA--VPDKNDTVKLYCNA   67 (101)
T ss_pred             cCCEEEECCCHHHHhcCCCCCCEECCHHHHHHHH---------------------------HHh--CCCCCCeEEEEeCC
Confidence            3578999999999999999999999998764322                           111  34678899999999


Q ss_pred             CCCCCCCCCCCCchhhHHHHHHHHHHHCCCCceEEccccHHHHHh
Q 026302          187 GGTMKPSQNLPEGQQSRSLIAAYLLVLNGYKNVYHLEGGLYKWFK  231 (240)
Q Consensus       187 G~~~~~~~~~~~~~~~rs~~aa~~L~~~G~~nV~~l~GG~~~W~~  231 (240)
                      |.              +|..++..|+++||++|.++ ||+.+|.-
T Consensus        68 G~--------------rS~~aa~~L~~~G~~~v~~~-GG~~~~~~   97 (101)
T TIGR02981        68 GR--------------QSGMAKDILLDMGYTHAENA-GGIKDIAM   97 (101)
T ss_pred             CH--------------HHHHHHHHHHHcCCCeEEec-CCHHHhhh
Confidence            98              99999999999999999985 99999974

Members of this very narrowly defined protein family are proteins active as rhodanese (EC 2.8.1.1) and found in the extended variants of the phage shock protein (psp operon) in Escherichia coli and a few closely related species. Note that the designation phage shock protein PspE has been applied, incorrectly, in many instances where the genome lacks the phage shock regulon entirely.

>PRK10287 thiosulfate:cyanide sulfurtransferase; Provisional

Probab=99.73  E-value=1.7e-17  Score=127.66  Aligned_cols=81  Identities=25%  Similarity=0.358  Sum_probs=68.1

Q ss_pred             CCeEEEEcCChhhhhhCCCCCCeeechhhHHhhhhHHHHHHHhhhhhcccCCCCCCcHHHHHHHHhcCCCCCcEEEEcCC
Q 026302          107 NNFVILDVRPEAEFKEAHPPGAINVQIYRLIKEWTAWDIARRAAFAFFGIFSGTEENPEFLQSVESQLDKDAKIIVACAT  186 (240)
Q Consensus       107 ~~~~lIDvR~~~ey~~ghIpGAinip~~~l~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~i~~~~~IVvyC~~  186 (240)
                      .+-+|||+|++.||..||||||+|+|+.++...+                           +.+  ..+++++||+||++
T Consensus        19 ~~~~lIDvR~~~ef~~ghIpGAiniP~~~l~~~l---------------------------~~l--~~~~~~~IVlyC~~   69 (104)
T PRK10287         19 AAEHWIDVRVPEQYQQEHVQGAINIPLKEVKERI---------------------------ATA--VPDKNDTVKLYCNA   69 (104)
T ss_pred             CCCEEEECCCHHHHhcCCCCccEECCHHHHHHHH---------------------------Hhc--CCCCCCeEEEEeCC
Confidence            3567999999999999999999999997664321                           111  34677899999999


Q ss_pred             CCCCCCCCCCCCchhhHHHHHHHHHHHCCCCceEEccccHHHHHh
Q 026302          187 GGTMKPSQNLPEGQQSRSLIAAYLLVLNGYKNVYHLEGGLYKWFK  231 (240)
Q Consensus       187 G~~~~~~~~~~~~~~~rs~~aa~~L~~~G~~nV~~l~GG~~~W~~  231 (240)
                      |.              +|..++..|.++||++|++ .||+.+|.-
T Consensus        70 G~--------------rS~~aa~~L~~~G~~~v~~-~GG~~~~~~   99 (104)
T PRK10287         70 GR--------------QSGQAKEILSEMGYTHAEN-AGGLKDIAM   99 (104)
T ss_pred             Ch--------------HHHHHHHHHHHcCCCeEEe-cCCHHHHhh
Confidence            97              9999999999999999987 699999974

>PRK07878 molybdopterin biosynthesis-like protein MoeZ; Validated

Probab=99.72  E-value=2.4e-17  Score=153.69  Aligned_cols=103  Identities=26%  Similarity=0.433  Sum_probs=88.7

Q ss_pred             cCccccHHHHHHHhcCC-CeEEEEcCChhhhhhCCCCCCeeechhhHHhhhhHHHHHHHhhhhhcccCCCCCCcHHHHHH
Q 026302           91 RVRSVEAKEALRLQKEN-NFVILDVRPEAEFKEAHPPGAINVQIYRLIKEWTAWDIARRAAFAFFGIFSGTEENPEFLQS  169 (240)
Q Consensus        91 ~~~~Is~~el~~~l~~~-~~~lIDvR~~~ey~~ghIpGAinip~~~l~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~  169 (240)
                      ....|+++|+.++++++ +++|||||++.||..||||||+|+|+..+....                            .
T Consensus       285 ~~~~Is~~el~~~l~~~~~~~lIDvR~~~ef~~ghIpGAinip~~~l~~~~----------------------------~  336 (392)
T PRK07878        285 AGSTITPRELKEWLDSGKKIALIDVREPVEWDIVHIPGAQLIPKSEILSGE----------------------------A  336 (392)
T ss_pred             CCCccCHHHHHHHHhCCCCeEEEECCCHHHHhcCCCCCCEEcChHHhcchh----------------------------H
Confidence            45689999999998764 578999999999999999999999998764311                            1


Q ss_pred             HHhcCCCCCcEEEEcCCCCCCCCCCCCCCchhhHHHHHHHHHHHCCCCceEEccccHHHHHhCCCCC
Q 026302          170 VESQLDKDAKIIVACATGGTMKPSQNLPEGQQSRSLIAAYLLVLNGYKNVYHLEGGLYKWFKEELPE  236 (240)
Q Consensus       170 ~~~~i~~~~~IVvyC~~G~~~~~~~~~~~~~~~rs~~aa~~L~~~G~~nV~~l~GG~~~W~~~g~pv  236 (240)
                       ...++++++|||||++|.              +|..++..|++.||++|++|+||+.+|..++.|.
T Consensus       337 -~~~l~~d~~iVvyC~~G~--------------rS~~aa~~L~~~G~~~V~~L~GG~~~W~~~~~~~  388 (392)
T PRK07878        337 -LAKLPQDRTIVLYCKTGV--------------RSAEALAALKKAGFSDAVHLQGGVVAWAKQVDPS  388 (392)
T ss_pred             -HhhCCCCCcEEEEcCCCh--------------HHHHHHHHHHHcCCCcEEEecCcHHHHHHhcCCC
Confidence             135789999999999998              9999999999999999999999999999886653

>TIGR03167 tRNA_sel_U_synt tRNA 2-selenouridine synthase

Probab=99.72  E-value=2.1e-17  Score=149.72  Aligned_cols=111  Identities=26%  Similarity=0.314  Sum_probs=83.0

Q ss_pred             CeEEEEcCChhhhhhCCCCCCeeechhhHHhhh--------hHHHHHHHhhhhhcccCCCCCCcHHHHHHHHhcCCCCCc
Q 026302          108 NFVILDVRPEAEFKEAHPPGAINVQIYRLIKEW--------TAWDIARRAAFAFFGIFSGTEENPEFLQSVESQLDKDAK  179 (240)
Q Consensus       108 ~~~lIDvR~~~ey~~ghIpGAinip~~~l~~~~--------~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~i~~~~~  179 (240)
                      +.+|||||++.||..||||||+|+|+.+..++-        .+-..+.+.++.+.+     ..++++++++....+++.+
T Consensus         2 ~~~liDVRsp~Ef~~ghipgAiniPl~~~~er~~vgt~ykq~g~~~A~~lg~~~v~-----~~l~~~i~~~~~~~~~~~~   76 (311)
T TIGR03167         2 FDPLIDVRSPAEFAEGHLPGAINLPLLNDEERAEVGTLYKQVGPFAAIKLGLALVS-----PNLAAHVEQWRAFADGPPQ   76 (311)
T ss_pred             CCEEEECCCHHHHhcCCCcCCEecccccchhhhhhhhhhhcccHHHHHHHhHhhhh-----HHHHHHHHHHHhhcCCCCc
Confidence            468999999999999999999999996544321        111223333333332     2445567777566677777


Q ss_pred             EEEEcC-CCCCCCCCCCCCCchhhHHHHHHHHHHHCCCCceEEccccHHHHHhCCCCCcc
Q 026302          180 IIVACA-TGGTMKPSQNLPEGQQSRSLIAAYLLVLNGYKNVYHLEGGLYKWFKEELPEVS  238 (240)
Q Consensus       180 IVvyC~-~G~~~~~~~~~~~~~~~rs~~aa~~L~~~G~~nV~~l~GG~~~W~~~g~pv~~  238 (240)
                      |||||. +|.              ||..++++|+.+|| +|++|+||+.+|...+.+...
T Consensus        77 vvvyC~~gG~--------------RS~~aa~~L~~~G~-~v~~L~GG~~aw~~~~~~~~~  121 (311)
T TIGR03167        77 PLLYCWRGGM--------------RSGSLAWLLAQIGF-RVPRLEGGYKAYRRFVIDQLE  121 (311)
T ss_pred             EEEEECCCCh--------------HHHHHHHHHHHcCC-CEEEecChHHHHHHhhhhhhh
Confidence            999996 555              99999999999999 699999999999998876543

The Escherichia coli YbbB protein was shown to encode a selenophosphate-dependent tRNA 2-selenouridine synthase, essential for modification of some tRNAs to replace a sulfur atom with selenium. This enzyme works with SelD, the selenium donor protein, which also acts in selenocysteine incorporation. Although the members of this protein family show a fairly deep split, sequences from both sides of the split are supported by co-occurence with, and often proximity to, the selD gene.

>PRK07411 hypothetical protein; Validated

Probab=99.70  E-value=7.8e-17  Score=150.17  Aligned_cols=108  Identities=27%  Similarity=0.443  Sum_probs=88.9

Q ss_pred             hcCccccHHHHHHHhcCC--CeEEEEcCChhhhhhCCCCCCeeechhhHHhhhhHHHHHHHhhhhhcccCCCCCCcHHHH
Q 026302           90 KRVRSVEAKEALRLQKEN--NFVILDVRPEAEFKEAHPPGAINVQIYRLIKEWTAWDIARRAAFAFFGIFSGTEENPEFL  167 (240)
Q Consensus        90 ~~~~~Is~~el~~~l~~~--~~~lIDvR~~~ey~~ghIpGAinip~~~l~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~  167 (240)
                      ..+..|+++|+.++++.+  +++|||||++.||..||||||+|+|+.++....                         ..
T Consensus       279 ~~~~~Is~~el~~~l~~~~~~~vlIDVR~~~E~~~ghIpGAiniP~~~l~~~~-------------------------~~  333 (390)
T PRK07411        279 AEIPEMTVTELKALLDSGADDFVLIDVRNPNEYEIARIPGSVLVPLPDIENGP-------------------------GV  333 (390)
T ss_pred             cccCccCHHHHHHHHhCCCCCeEEEECCCHHHhccCcCCCCEEccHHHhhccc-------------------------ch
Confidence            445689999999998754  579999999999999999999999998764311                         01


Q ss_pred             HHHHhcCCCCCcEEEEcCCCCCCCCCCCCCCchhhHHHHHHHHHHHCCCCceEEccccHHHHHhCCCCCcc
Q 026302          168 QSVESQLDKDAKIIVACATGGTMKPSQNLPEGQQSRSLIAAYLLVLNGYKNVYHLEGGLYKWFKEELPEVS  238 (240)
Q Consensus       168 ~~~~~~i~~~~~IVvyC~~G~~~~~~~~~~~~~~~rs~~aa~~L~~~G~~nV~~l~GG~~~W~~~g~pv~~  238 (240)
                      +++ ..++++++|||||.+|.              ||..++..|+++||++ +.|+||+.+|.++..|..+
T Consensus       334 ~~l-~~l~~d~~IVvyC~~G~--------------RS~~aa~~L~~~G~~~-~~l~GG~~~W~~~~~p~~p  388 (390)
T PRK07411        334 EKV-KELLNGHRLIAHCKMGG--------------RSAKALGILKEAGIEG-TNVKGGITAWSREVDPSVP  388 (390)
T ss_pred             HHH-hhcCCCCeEEEECCCCH--------------HHHHHHHHHHHcCCCe-EEecchHHHHHHhcCCCCC
Confidence            122 34678899999999998              9999999999999985 5799999999998777643

>PRK11784 tRNA 2-selenouridine synthase; Provisional

Probab=99.69  E-value=1e-16  Score=147.05  Aligned_cols=125  Identities=22%  Similarity=0.242  Sum_probs=83.7

Q ss_pred             cHHHHHHHhcCCCeEEEEcCChhhhhhCCCCCCeeechhhHHhhhhHHH----HHHHhhhhhcccCCCCCCcHHHHHHHH
Q 026302           96 EAKEALRLQKENNFVILDVRPEAEFKEAHPPGAINVQIYRLIKEWTAWD----IARRAAFAFFGIFSGTEENPEFLQSVE  171 (240)
Q Consensus        96 s~~el~~~l~~~~~~lIDvR~~~ey~~ghIpGAinip~~~l~~~~~~~~----~~~~~~~~~~g~~~~~~~~~~~~~~~~  171 (240)
                      +..++.+++.+ +.+|||||++.||..||||||+|+|+.+..++....+    .....+...++.+. ....++.+.++.
T Consensus         4 ~~~~~~~~~~~-~~~lIDVRsp~Ef~~ghIpgAiniPl~~~~er~~vgt~Ykq~g~~~a~~lg~~lv-~~~l~~~~~~~~   81 (345)
T PRK11784          4 DAQDFRALFLN-DTPLIDVRSPIEFAEGHIPGAINLPLLNDEERAEVGTCYKQQGQFAAIALGHALV-AGNIAAHREEAW   81 (345)
T ss_pred             cHHHHHHHHhC-CCEEEECCCHHHHhcCCCCCeeeCCCCChhHHHhhchhhcccCHHHHHHhhhhhc-chhHHHHHHHHH
Confidence            45666666554 7899999999999999999999999976543211000    00001111111111 122344444332


Q ss_pred             hcC-CCCCcEEEEcC-CCCCCCCCCCCCCchhhHHHHHHHHHHHCCCCceEEccccHHHHHhCCCCCc
Q 026302          172 SQL-DKDAKIIVACA-TGGTMKPSQNLPEGQQSRSLIAAYLLVLNGYKNVYHLEGGLYKWFKEELPEV  237 (240)
Q Consensus       172 ~~i-~~~~~IVvyC~-~G~~~~~~~~~~~~~~~rs~~aa~~L~~~G~~nV~~l~GG~~~W~~~g~pv~  237 (240)
                      ... .++++|||||. +|.              ||..++++|..+|| +|++|+||+.+|...+++..
T Consensus        82 ~~~~~~~~~ivvyC~rgG~--------------RS~~aa~~L~~~G~-~v~~L~GG~~awr~~~~~~~  134 (345)
T PRK11784         82 ADFPRANPRGLLYCWRGGL--------------RSGSVQQWLKEAGI-DVPRLEGGYKAYRRFVIDTL  134 (345)
T ss_pred             HhcccCCCeEEEEECCCCh--------------HHHHHHHHHHHcCC-CcEEEcCCHHHHHHhhHHHH
Confidence            333 38899999996 454              99999999999999 59999999999998876543

>PRK05597 molybdopterin biosynthesis protein MoeB; Validated

Probab=99.66  E-value=3e-16  Score=144.56  Aligned_cols=96  Identities=26%  Similarity=0.446  Sum_probs=81.2

Q ss_pred             cCccccHHHHHHHhcCCCeEEEEcCChhhhhhCCCCCCeeechhhHHhhhhHHHHHHHhhhhhcccCCCCCCcHHHHHHH
Q 026302           91 RVRSVEAKEALRLQKENNFVILDVRPEAEFKEAHPPGAINVQIYRLIKEWTAWDIARRAAFAFFGIFSGTEENPEFLQSV  170 (240)
Q Consensus        91 ~~~~Is~~el~~~l~~~~~~lIDvR~~~ey~~ghIpGAinip~~~l~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~  170 (240)
                      ....++++++.+...  +.+|||||++.||..||||||+|+|+.++...+..                            
T Consensus       259 ~~~~i~~~~~~~~~~--~~~IIDVR~~~ef~~ghIpgAinip~~~l~~~~~~----------------------------  308 (355)
T PRK05597        259 FGEVLDVPRVSALPD--GVTLIDVREPSEFAAYSIPGAHNVPLSAIREGANP----------------------------  308 (355)
T ss_pred             cccccCHHHHHhccC--CCEEEECCCHHHHccCcCCCCEEeCHHHhhhcccc----------------------------
Confidence            345788888885543  57999999999999999999999999876543210                            


Q ss_pred             HhcCCCCCcEEEEcCCCCCCCCCCCCCCchhhHHHHHHHHHHHCCCCceEEccccHHHHHh
Q 026302          171 ESQLDKDAKIIVACATGGTMKPSQNLPEGQQSRSLIAAYLLVLNGYKNVYHLEGGLYKWFK  231 (240)
Q Consensus       171 ~~~i~~~~~IVvyC~~G~~~~~~~~~~~~~~~rs~~aa~~L~~~G~~nV~~l~GG~~~W~~  231 (240)
                       ..++++++||+||.+|.              +|..+++.|+..||+||++|+||+.+|.+
T Consensus       309 -~~~~~~~~IvvyC~~G~--------------rS~~Aa~~L~~~G~~nV~~L~GGi~~W~~  354 (355)
T PRK05597        309 -PSVSAGDEVVVYCAAGV--------------RSAQAVAILERAGYTGMSSLDGGIEGWLD  354 (355)
T ss_pred             -ccCCCCCeEEEEcCCCH--------------HHHHHHHHHHHcCCCCEEEecCcHHHHhh
Confidence             13678899999999997              99999999999999999999999999975

>cd01446 DSP_MapKP N-terminal regulatory rhodanese domain of dual specificity phosphatases (DSP), such as Mapk Phosphatase

Probab=99.65  E-value=1.4e-15  Score=120.83  Aligned_cols=123  Identities=20%  Similarity=0.259  Sum_probs=83.0

Q ss_pred             cccHHHHHHHhcC--CCeEEEEcCChhhhhhCCCCCCeeechhhHHhhhhHHHHHHHhhhhhcccC--CCCCCcHHHHHH
Q 026302           94 SVEAKEALRLQKE--NNFVILDVRPEAEFKEAHPPGAINVQIYRLIKEWTAWDIARRAAFAFFGIF--SGTEENPEFLQS  169 (240)
Q Consensus        94 ~Is~~el~~~l~~--~~~~lIDvR~~~ey~~ghIpGAinip~~~l~~~~~~~~~~~~~~~~~~g~~--~~~~~~~~~~~~  169 (240)
                      .|+++++.+++++  ++.+|||||++.+|..||||||+|+|+..+..+...           .+..  ......++..+.
T Consensus         1 ~is~~~l~~~l~~~~~~~~iiDvR~~~~~~~~hI~~ai~i~~~~~~~~~~~-----------~~~~~~~~~~~~~~~~~~   69 (132)
T cd01446           1 TIDCAWLAALLREGGERLLLLDCRPFLEYSSSHIRGAVNVCCPTILRRRLQ-----------GGKILLQQLLSCPEDRDR   69 (132)
T ss_pred             CcCHHHHHHHHhcCCCCEEEEECCCHHHHhhCcccCcEecChHHHHHHhhc-----------ccchhhhhhcCCHHHHHH
Confidence            3789999999975  478999999999999999999999999875432100           0000  001112233333


Q ss_pred             HHhcCCCCCcEEEEcCCCCCCCCCCCCCCchhhHHHHHHHHHHH--CCCCceEEccccHHHHHhCCCC
Q 026302          170 VESQLDKDAKIIVACATGGTMKPSQNLPEGQQSRSLIAAYLLVL--NGYKNVYHLEGGLYKWFKEELP  235 (240)
Q Consensus       170 ~~~~i~~~~~IVvyC~~G~~~~~~~~~~~~~~~rs~~aa~~L~~--~G~~nV~~l~GG~~~W~~~g~p  235 (240)
                      +.. . ++.+|||||..+..+    + ......++..++..|..  .|+.+|++|+||+.+|... +|
T Consensus        70 l~~-~-~~~~VVvYd~~~~~~----~-~~~~~~~~~~~~~~l~~~~~~~~~v~~L~GG~~~w~~~-~p  129 (132)
T cd01446          70 LRR-G-ESLAVVVYDESSSDR----E-RLREDSTAESVLGKLLRKLQEGCSVYLLKGGFEQFSSE-FP  129 (132)
T ss_pred             Hhc-C-CCCeEEEEeCCCcch----h-hccccchHHHHHHHHHHhcCCCceEEEEcchHHHHHhh-Cc
Confidence            322 2 778999999988621    0 00011257777788877  4778899999999999764 44

This domain is believed to determine substrate specificity by binding the substrate, such as ERK2, and activating the C-terminal catalytic domain by inducing a conformational change. This domain has homology to the Rhodanese Homology Domain.

>COG1054 Predicted sulfurtransferase [General function prediction only]

Probab=99.59  E-value=8.6e-16  Score=136.24  Aligned_cols=164  Identities=24%  Similarity=0.320  Sum_probs=123.4

Q ss_pred             cccccCCccccCcCCCCCCcccCCCCCCCCceeEeecCcchhhhhccccCCCCcceeeccCCCCCCCCCCchhhHHHHHH
Q 026302            7 VSQLHSSLSSLYPNYRSSPLILAPKTNQDTTICCLTVRSFTFSRRRLSSQSVPRGLIIQNAATKPAKSPAEEDWKTKREL   86 (240)
Q Consensus         7 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~rs~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~   86 (240)
                      |+.+.....-+..++.   ..|+|..- ..+..+....++..++.|+++..++.|+.-   ...|...            
T Consensus        50 vsG~~e~~~~~~~~l~---a~~~f~~l-~~K~s~~~~~pF~r~kVk~kkEIV~lg~~d---dv~p~~~------------  110 (308)
T COG1054          50 VSGSAEAIEAYMAWLR---ADPGFADL-RFKISEADEKPFWRLKVKLKKEIVALGVED---DVDPLEN------------  110 (308)
T ss_pred             EecCHHHHHHHHHHHH---hCcccccc-eeeeccccCCCcceEEEeehhhheecCCCC---CcCcccc------------
Confidence            3334444444555555   33445442 234444566889999999999999999863   1111111            


Q ss_pred             HhhhcCccccHHHHHHHhcCCCeEEEEcCChhhhhhCCCCCCeeechhhHHhhhhHHHHHHHhhhhhcccCCCCCCcHHH
Q 026302           87 LLQKRVRSVEAKEALRLQKENNFVILDVRPEAEFKEAHPPGAINVQIYRLIKEWTAWDIARRAAFAFFGIFSGTEENPEF  166 (240)
Q Consensus        87 l~~~~~~~Is~~el~~~l~~~~~~lIDvR~~~ey~~ghIpGAinip~~~l~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~  166 (240)
                          .-.+|+|+++.+++.++++++||+|...||+.||..||++.+...+.+                        +|..
T Consensus       111 ----vG~yl~p~~wn~~l~D~~~vviDtRN~YE~~iG~F~gAv~p~~~tFre------------------------fP~~  162 (308)
T COG1054         111 ----VGTYLSPKDWNELLSDPDVVVIDTRNDYEVAIGHFEGAVEPDIETFRE------------------------FPAW  162 (308)
T ss_pred             ----ccCccCHHHHHHHhcCCCeEEEEcCcceeEeeeeecCccCCChhhhhh------------------------hHHH
Confidence                123799999999999999999999999999999999999999988764                        3445


Q ss_pred             HHHHHhcCCCCCcEEEEcCCCCCCCCCCCCCCchhhHHHHHHHHHHHCCCCceEEccccHHHHHhC
Q 026302          167 LQSVESQLDKDAKIIVACATGGTMKPSQNLPEGQQSRSLIAAYLLVLNGYKNVYHLEGGLYKWFKE  232 (240)
Q Consensus       167 ~~~~~~~i~~~~~IVvyC~~G~~~~~~~~~~~~~~~rs~~aa~~L~~~G~~nV~~l~GG~~~W~~~  232 (240)
                      +++.. ..-++++|+.||.+|.              |+..+..+|...||++|++|+||+..+.+.
T Consensus       163 v~~~~-~~~~~KkVvmyCTGGI--------------RCEKas~~m~~~GF~eVyhL~GGIl~Y~e~  213 (308)
T COG1054         163 VEENL-DLLKDKKVVMYCTGGI--------------RCEKASAWMKENGFKEVYHLEGGILKYLED  213 (308)
T ss_pred             HHHHH-HhccCCcEEEEcCCce--------------eehhhHHHHHHhcchhhhcccchHHHHhhh
Confidence            55543 3345569999999999              999999999999999999999999887654

>PRK05600 thiamine biosynthesis protein ThiF; Validated

Probab=99.59  E-value=3.1e-15  Score=138.54  Aligned_cols=94  Identities=21%  Similarity=0.325  Sum_probs=78.2

Q ss_pred             cccHHHHHHHhcCCCeEEEEcCChhhhhhCCCC---CCeeechhhHHhhhhHHHHHHHhhhhhcccCCCCCCcHHHHHHH
Q 026302           94 SVEAKEALRLQKENNFVILDVRPEAEFKEAHPP---GAINVQIYRLIKEWTAWDIARRAAFAFFGIFSGTEENPEFLQSV  170 (240)
Q Consensus        94 ~Is~~el~~~l~~~~~~lIDvR~~~ey~~ghIp---GAinip~~~l~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~  170 (240)
                      .++++++.+++++++.+|||||++.||..||||   ||+|||+.++.+..                        ++..++
T Consensus       272 ~~~~~el~~~l~~~~~~lIDVR~~~E~~~ghI~~~~gAinIPl~~l~~~~------------------------~~~~~l  327 (370)
T PRK05600        272 RTDTTSLIDATLNGSATLLDVREPHEVLLKDLPEGGASLKLPLSAITDDA------------------------DILHAL  327 (370)
T ss_pred             ccCHHHHHHHHhcCCeEEEECCCHHHhhhccCCCCCccEeCcHHHhhcch------------------------hhhhhc
Confidence            799999999998877899999999999999998   59999998874311                        111222


Q ss_pred             HhcCCCCCcEEEEcCCCCCCCCCCCCCCchhhHHHHHHHHHHHCCCCc-eEEccccHH
Q 026302          171 ESQLDKDAKIIVACATGGTMKPSQNLPEGQQSRSLIAAYLLVLNGYKN-VYHLEGGLY  227 (240)
Q Consensus       171 ~~~i~~~~~IVvyC~~G~~~~~~~~~~~~~~~rs~~aa~~L~~~G~~n-V~~l~GG~~  227 (240)
                       ..++++ +|||||.+|.              ||..++..|++.||++ |++|.||+.
T Consensus       328 -~~~~~~-~Ivv~C~sG~--------------RS~~Aa~~L~~~G~~~~v~~l~GG~~  369 (370)
T PRK05600        328 -SPIDGD-NVVVYCASGI--------------RSADFIEKYSHLGHELTLHNLPGGVN  369 (370)
T ss_pred             -cccCCC-cEEEECCCCh--------------hHHHHHHHHHHcCCCCceEEeccccC
Confidence             234555 9999999998              9999999999999986 999999975

>KOG1529 consensus Mercaptopyruvate sulfurtransferase/thiosulfate sulfurtransferase [Defense mechanisms]

Probab=99.40  E-value=6.7e-13  Score=117.29  Aligned_cols=121  Identities=21%  Similarity=0.260  Sum_probs=100.5

Q ss_pred             cccHHHHHHHhcCCCeEEEEcC---------ChhhhhhCCCCCCeeechhhHHhhhhHHHHHHHhhhhhcccCCCCCCcH
Q 026302           94 SVEAKEALRLQKENNFVILDVR---------PEAEFKEAHPPGAINVQIYRLIKEWTAWDIARRAAFAFFGIFSGTEENP  164 (240)
Q Consensus        94 ~Is~~el~~~l~~~~~~lIDvR---------~~~ey~~ghIpGAinip~~~l~~~~~~~~~~~~~~~~~~g~~~~~~~~~  164 (240)
                      .++++++.+.+.+.+..|||.-         ...||...|||||+++.++.+...-.          ...++++..+.+.
T Consensus         6 iv~~~~v~~~~~~~~~~iLDaSw~~~~~~~~~~~e~~~~hipga~~fdld~~~~~s~----------~~~~~lp~~e~Fa   75 (286)
T KOG1529|consen    6 IVSVKWVMENLGNHGLRILDASWYFPPLRRIAEFEFLERHIPGASHFDLDIISYPSS----------PYRHMLPTAEHFA   75 (286)
T ss_pred             ccChHHHHHhCcCCCeEEEeeeeecCchhhhhhhhhhhccCCCceeeeccccccCCC----------cccccCccHHHHH
Confidence            5889999999998889999983         34688899999999999987743211          1244555556667


Q ss_pred             HHHHHHHhcCCCCCcEEEEcC--CCCCCCCCCCCCCchhhHHHHHHHHHHHCCCCceEEccccHHHHHhCCCCCccC
Q 026302          165 EFLQSVESQLDKDAKIIVACA--TGGTMKPSQNLPEGQQSRSLIAAYLLVLNGYKNVYHLEGGLYKWFKEELPEVSE  239 (240)
Q Consensus       165 ~~~~~~~~~i~~~~~IVvyC~--~G~~~~~~~~~~~~~~~rs~~aa~~L~~~G~~nV~~l~GG~~~W~~~g~pv~~~  239 (240)
                      ++.+.+  ++++++.+|||++  .|.             ..|.+++|.|+..|+++|.+|+||+..|+..|+|+.++
T Consensus        76 ~y~~~l--Gi~n~d~vViYd~~~~Gm-------------~~Asrv~W~fr~fGh~~VslL~GG~~~Wk~~g~~~~s~  137 (286)
T KOG1529|consen   76 EYASRL--GVDNGDHVVIYDRGDGGM-------------FSASRVWWTFRVFGHTKVSLLNGGFRAWKAAGGPVDSS  137 (286)
T ss_pred             HHHHhc--CCCCCCeEEEEcCCCcce-------------eehhhHHHHHHHhCccEEEEecCcHHHHHHcCCccccc
Confidence            777776  8999999999999  554             48999999999999999999999999999999999876

>PRK01269 tRNA s(4)U8 sulfurtransferase; Provisional

Probab=99.35  E-value=2.4e-12  Score=123.10  Aligned_cols=73  Identities=23%  Similarity=0.364  Sum_probs=64.4

Q ss_pred             CCeEEEEcCChhhhhhCCCCC----CeeechhhHHhhhhHHHHHHHhhhhhcccCCCCCCcHHHHHHHHhcCCCCCcEEE
Q 026302          107 NNFVILDVRPEAEFKEAHPPG----AINVQIYRLIKEWTAWDIARRAAFAFFGIFSGTEENPEFLQSVESQLDKDAKIIV  182 (240)
Q Consensus       107 ~~~~lIDvR~~~ey~~ghIpG----Ainip~~~l~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~i~~~~~IVv  182 (240)
                      ++.+|||||++.||..|||||    |+|+|+.++....                               ..++++++||+
T Consensus       406 ~~~~lIDVR~~~E~~~~hI~g~~~~a~niP~~~l~~~~-------------------------------~~l~~~~~iiv  454 (482)
T PRK01269        406 PDDVIIDIRSPDEQEDKPLKLEGVEVKSLPFYKLSTQF-------------------------------GDLDQSKTYLL  454 (482)
T ss_pred             CCCEEEECCCHHHHhcCCCCCCCceEEECCHHHHHHHH-------------------------------hhcCCCCeEEE
Confidence            378999999999999999999    9999998875321                               34688899999


Q ss_pred             EcCCCCCCCCCCCCCCchhhHHHHHHHHHHHCCCCceEEccc
Q 026302          183 ACATGGTMKPSQNLPEGQQSRSLIAAYLLVLNGYKNVYHLEG  224 (240)
Q Consensus       183 yC~~G~~~~~~~~~~~~~~~rs~~aa~~L~~~G~~nV~~l~G  224 (240)
                      ||.+|.              ||..++..|..+||+||++|.+
T Consensus       455 yC~~G~--------------rS~~aa~~L~~~G~~nv~~y~~  482 (482)
T PRK01269        455 YCDRGV--------------MSRLQALYLREQGFSNVKVYRP  482 (482)
T ss_pred             ECCCCH--------------HHHHHHHHHHHcCCccEEecCC
Confidence            999998              9999999999999999998853

>KOG3772 consensus M-phase inducer phosphatase [Cell cycle control, cell division, chromosome partitioning]

Probab=99.27  E-value=6.3e-12  Score=113.17  Aligned_cols=103  Identities=24%  Similarity=0.445  Sum_probs=79.9

Q ss_pred             hcCccccHHHHHHHhcCC------CeEEEEcCChhhhhhCCCCCCeeechhhHHhhhhHHHHHHHhhhhhcccCCCCCCc
Q 026302           90 KRVRSVEAKEALRLQKEN------NFVILDVRPEAEFKEAHPPGAINVQIYRLIKEWTAWDIARRAAFAFFGIFSGTEEN  163 (240)
Q Consensus        90 ~~~~~Is~~el~~~l~~~------~~~lIDvR~~~ey~~ghIpGAinip~~~l~~~~~~~~~~~~~~~~~~g~~~~~~~~  163 (240)
                      ..++.|+++.|+.+++..      .+.|||+|-+.||..|||+||+||+..+.....                       
T Consensus       153 ~~~k~Is~etl~~ll~~~~~~~~~~~~iiDcR~pyEY~GGHIkgavnl~~~~~~~~~-----------------------  209 (325)
T KOG3772|consen  153 QDLKYISPETLKGLLQGKFSDFFDKFIIIDCRYPYEYEGGHIKGAVNLYSKELLQDF-----------------------  209 (325)
T ss_pred             ccccccCHHHHHHHHHhccccceeeEEEEEeCCcccccCcccccceecccHhhhhhh-----------------------
Confidence            567899999999999753      367999999999999999999999987765421                       


Q ss_pred             HHHHHHHHhcC---CCCCcEEEEcCCCCCCCCCCCCCCchhhHHHHHHHHHHH------------CCCCceEEccccHHH
Q 026302          164 PEFLQSVESQL---DKDAKIIVACATGGTMKPSQNLPEGQQSRSLIAAYLLVL------------NGYKNVYHLEGGLYK  228 (240)
Q Consensus       164 ~~~~~~~~~~i---~~~~~IVvyC~~G~~~~~~~~~~~~~~~rs~~aa~~L~~------------~G~~nV~~l~GG~~~  228 (240)
                        |...  ...   .+...+||||....             .|+..+|..|+.            +-|..+|+|+||+..
T Consensus       210 --f~~~--~~~~~~~~~~i~IFhCefSq-------------~RGP~mA~~lr~iDR~r~~~~yp~l~ypE~yiL~gGYk~  272 (325)
T KOG3772|consen  210 --FLLK--DGVPSGSKRVILIFHCEFSQ-------------ERGPKMARHLRNIDRDRNSNDYPKLSYPELYILDGGYKE  272 (325)
T ss_pred             --hccc--cccccccCceeEEEEeeecc-------------ccCHHHHHHHHHhhhhhhcccCcccccchheeecccHHH
Confidence              0000  111   23457899999776             499999999994            346789999999999


Q ss_pred             HHhC
Q 026302          229 WFKE  232 (240)
Q Consensus       229 W~~~  232 (240)
                      |...
T Consensus       273 ff~~  276 (325)
T KOG3772|consen  273 FFSN  276 (325)
T ss_pred             HHHh
Confidence            9754

>KOG2017 consensus Molybdopterin synthase sulfurylase [Coenzyme transport and metabolism]

Probab=99.13  E-value=9e-11  Score=106.31  Aligned_cols=105  Identities=25%  Similarity=0.397  Sum_probs=84.6

Q ss_pred             ccccHHHHHHHhcC-CCeEEEEcCChhhhhhCCCCCCeeechhhHHhhhhHHHHHHHhhhhhcccCCCCCCcHHHHHHHH
Q 026302           93 RSVEAKEALRLQKE-NNFVILDVRPEAEFKEAHPPGAINVQIYRLIKEWTAWDIARRAAFAFFGIFSGTEENPEFLQSVE  171 (240)
Q Consensus        93 ~~Is~~el~~~l~~-~~~~lIDvR~~~ey~~ghIpGAinip~~~l~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~  171 (240)
                      ..|+..|+++++++ ...++||||++-||+..|+|+|+|||+.++.....                          ++..
T Consensus       317 ~Rvsv~d~k~il~~~~~h~llDvRp~~~~eI~~lP~avNIPL~~l~~~~~--------------------------~~~~  370 (427)
T KOG2017|consen  317 ERVSVTDYKRILDSGAKHLLLDVRPSHEYEICRLPEAVNIPLKELRSRSG--------------------------KKLQ  370 (427)
T ss_pred             hcccHHHHHHHHhcCCCeEEEeccCcceEEEEecccccccchhhhhhhhh--------------------------hhhc
Confidence            47999999999987 47899999999999999999999999999876431                          1111


Q ss_pred             hcC-CCCCcEEEEcCCCCCCCCCCCCCCchhhHHHHHHHHHHHCCCC-ceEEccccHHHHHhCCCCCc
Q 026302          172 SQL-DKDAKIIVACATGGTMKPSQNLPEGQQSRSLIAAYLLVLNGYK-NVYHLEGGLYKWFKEELPEV  237 (240)
Q Consensus       172 ~~i-~~~~~IVvyC~~G~~~~~~~~~~~~~~~rs~~aa~~L~~~G~~-nV~~l~GG~~~W~~~g~pv~  237 (240)
                      ..+ ....+|+|+|+.|.              .|.+|.+.|++...+ +|+-+.||+.+|...-.|..
T Consensus       371 ~~~~~~~~~I~ViCrrGN--------------dSQ~Av~~Lre~~~~~~vrDvigGl~~w~~~vd~~f  424 (427)
T KOG2017|consen  371 GDLNTESKDIFVICRRGN--------------DSQRAVRILREKFPDSSVRDVIGGLKAWAAKVDPNF  424 (427)
T ss_pred             ccccccCCCEEEEeCCCC--------------chHHHHHHHHhhCCchhhhhhhhHHHHHHHhcCcCC
Confidence            122 34567999999999              899999999987653 67788999999998755543

>KOG1529 consensus Mercaptopyruvate sulfurtransferase/thiosulfate sulfurtransferase [Defense mechanisms]

Probab=99.06  E-value=4.3e-10  Score=99.62  Aligned_cols=98  Identities=27%  Similarity=0.438  Sum_probs=74.3

Q ss_pred             hcCCCeEEEEcCChhhhh-----------hCCCCCCeeechhhHHhhhhHHHHHHHhhhhhcccCCCCCCcHHHHHHHHh
Q 026302          104 QKENNFVILDVRPEAEFK-----------EAHPPGAINVQIYRLIKEWTAWDIARRAAFAFFGIFSGTEENPEFLQSVES  172 (240)
Q Consensus       104 l~~~~~~lIDvR~~~ey~-----------~ghIpGAinip~~~l~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~  172 (240)
                      ++..++.+||.|...+|.           .||||||+|+|+..+...-              |.....++......  ..
T Consensus       168 ~~~~~~~~~DaRs~grF~Gt~p~~~~~~~ggHIpGa~n~P~~~~~~~~--------------g~~k~~edl~~~f~--~~  231 (286)
T KOG1529|consen  168 LATKNFQYLDARSKGRFDGTEPEPRSGATGGHIPGAINFPFDEVLDPD--------------GFIKPAEDLKHLFA--QK  231 (286)
T ss_pred             cccccceeeeccccccccccCCCCcccCcCccCCCcccCChHHhcccc--------------cccCCHHHHHHHHH--hc
Confidence            345579999999998886           5899999999999876421              00111112222222  23


Q ss_pred             cCCCCCcEEEEcCCCCCCCCCCCCCCchhhHHHHHHHHHHHCCCCceEEccccHHHHHhC
Q 026302          173 QLDKDAKIIVACATGGTMKPSQNLPEGQQSRSLIAAYLLVLNGYKNVYHLEGGLYKWFKE  232 (240)
Q Consensus       173 ~i~~~~~IVvyC~~G~~~~~~~~~~~~~~~rs~~aa~~L~~~G~~nV~~l~GG~~~W~~~  232 (240)
                      ++..++++|+-|..|.              .+...+..|...| .++.+|+|+|.+|.-.
T Consensus       232 ~l~~~~p~~~sC~~Gi--------------sa~~i~~al~r~g-~~~~lYdGS~~Ew~~~  276 (286)
T KOG1529|consen  232 GLKLSKPVIVSCGTGI--------------SASIIALALERSG-PDAKLYDGSWTEWALR  276 (286)
T ss_pred             CcccCCCEEEeeccch--------------hHHHHHHHHHhcC-CCcceecccHHHHhhc
Confidence            6788999999999998              8999999999999 7899999999999853

>COG5105 MIH1 Mitotic inducer, protein phosphatase [Cell division and chromosome partitioning]

Probab=98.34  E-value=1e-06  Score=79.44  Aligned_cols=101  Identities=23%  Similarity=0.358  Sum_probs=76.2

Q ss_pred             hcCccccHHHHHHHhcCC------CeEEEEcCChhhhhhCCCCCCeeechhhHHhhhhHHHHHHHhhhhhcccCCCCCCc
Q 026302           90 KRVRSVEAKEALRLQKEN------NFVILDVRPEAEFKEAHPPGAINVQIYRLIKEWTAWDIARRAAFAFFGIFSGTEEN  163 (240)
Q Consensus        90 ~~~~~Is~~el~~~l~~~------~~~lIDvR~~~ey~~ghIpGAinip~~~l~~~~~~~~~~~~~~~~~~g~~~~~~~~  163 (240)
                      ..++.|+++.++.+++..      +..|||+|=+.||..|||-.|+||.-.+-..                         
T Consensus       239 Ds~~RIs~etlk~vl~g~~~~~f~kCiIIDCRFeYEY~GGHIinaVNi~s~~~l~-------------------------  293 (427)
T COG5105         239 DSIQRISVETLKQVLEGMYNIDFLKCIIIDCRFEYEYRGGHIINAVNISSTKKLG-------------------------  293 (427)
T ss_pred             cchhhcCHHHHHHHHhchhhhhhhceeEEeecceeeecCceeeeeeecchHHHHH-------------------------
Confidence            557799999999999864      3569999999999999999999998654321                         


Q ss_pred             HHHHHHHHhcCCCCCcEEEEcCCCCCCCCCCCCCCchhhHHHHHHHHHHHC------------CCCceEEccccHHHHHh
Q 026302          164 PEFLQSVESQLDKDAKIIVACATGGTMKPSQNLPEGQQSRSLIAAYLLVLN------------GYKNVYHLEGGLYKWFK  231 (240)
Q Consensus       164 ~~~~~~~~~~i~~~~~IVvyC~~G~~~~~~~~~~~~~~~rs~~aa~~L~~~------------G~~nV~~l~GG~~~W~~  231 (240)
                      ..|+-   ..+..-.-+||.|....             -|+..+|..|+.+            =|..|++|+||+..+-.
T Consensus       294 ~~F~h---kplThp~aLifHCEfSs-------------hRaP~LA~HlRN~DR~~N~dhYP~L~yPevyIl~GGYk~fy~  357 (427)
T COG5105         294 LLFRH---KPLTHPRALIFHCEFSS-------------HRAPRLAQHLRNMDRMKNPDHYPLLTYPEVYILEGGYKKFYS  357 (427)
T ss_pred             HHHHh---ccccCceeEEEEeeccc-------------ccchhHHHHHhhhhhhcCcccCcccccceEEEecCcHHHHhh
Confidence            11111   12334556899999664             2899999999863            35789999999998654

>COG2603 Predicted ATPase [General function prediction only]

Probab=97.69  E-value=4.3e-05  Score=68.38  Aligned_cols=116  Identities=22%  Similarity=0.225  Sum_probs=69.9

Q ss_pred             HHHHHhcCCCeEEEEcCChhhhhhCCCCCCeeechhhHHhhhhHHHHHHH----hhhhhcccCCCCCCcHHHHHHHHhcC
Q 026302           99 EALRLQKENNFVILDVRPEAEFKEAHPPGAINVQIYRLIKEWTAWDIARR----AAFAFFGIFSGTEENPEFLQSVESQL  174 (240)
Q Consensus        99 el~~~l~~~~~~lIDvR~~~ey~~ghIpGAinip~~~l~~~~~~~~~~~~----~~~~~~g~~~~~~~~~~~~~~~~~~i  174 (240)
                      +...++. .+..+||||.+.||..|+.|+++|+|..+-.+..+-..--.+    .+-+..+...-..-..+.+....+ .
T Consensus         7 ~~~~~~~-~~~~lid~rap~ef~~g~~~ia~nl~~~ndder~~Igt~yKk~~~~~a~alg~~~vcG~i~~~~l~ask~-f   84 (334)
T COG2603           7 DYRALLL-ADTPLIDVRAPIEFENGAMPIAINLPLMNDDERQEIGTCYKKQGQDAAKALGHALVCGEIRQQRLEASKA-F   84 (334)
T ss_pred             HHHHHHh-cCCceeeccchHHHhcccchhhhccccccchHHHHHHHHHhhcCcHHHHHHHHHHHHhHHHHHHHHHHHH-H
Confidence            3444443 478999999999999999999999998765554322221111    111111111111111222333222 2


Q ss_pred             CCCCcEEEEcCCCCCCCCCCCCCCchhhHHHHHHHHH-HHCCCCceEEccccHHHHH
Q 026302          175 DKDAKIIVACATGGTMKPSQNLPEGQQSRSLIAAYLL-VLNGYKNVYHLEGGLYKWF  230 (240)
Q Consensus       175 ~~~~~IVvyC~~G~~~~~~~~~~~~~~~rs~~aa~~L-~~~G~~nV~~l~GG~~~W~  230 (240)
                      -.+.++-++|..|+             .|+...+.+| ...|++ +--+.||+.+..
T Consensus        85 ~e~~~~Gi~c~rgg-------------~rsk~v~~~l~~~~g~~-~~r~iGGeKalr  127 (334)
T COG2603          85 QEENPVGILCARGG-------------LRSKIVQKWLGYAAGID-YPRVIGGEKALR  127 (334)
T ss_pred             HHhCCcceeecccc-------------chhHHHHHHHHHHHHhh-hhhhhchHHHHH
Confidence            23345555599887             4999999999 777875 666779988753

>KOG1717 consensus Dual specificity phosphatase [Defense mechanisms]

Probab=96.25  E-value=0.0062  Score=54.21  Aligned_cols=120  Identities=20%  Similarity=0.215  Sum_probs=71.0

Q ss_pred             cccHHHHHHHhcCCCeEEEEcCChhhhhhCCCCCCeeechhhHHhhhhHHHHHHHhhhhhcccCCCCCCcHHHHHHHHhc
Q 026302           94 SVEAKEALRLQKENNFVILDVRPEAEFKEAHPPGAINVQIYRLIKEWTAWDIARRAAFAFFGIFSGTEENPEFLQSVESQ  173 (240)
Q Consensus        94 ~Is~~el~~~l~~~~~~lIDvR~~~ey~~ghIpGAinip~~~l~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~  173 (240)
                      .++++|+.+.+..++.+++|+|+    +..||.+|+|+-+.-++.+...     ..-+.+-..+++....+.+-.     
T Consensus         5 ~~s~~wlnr~l~~~nllllDCRs----es~~i~~A~~valPalmlrrl~-----~g~l~~ra~~p~~~d~~~~~~-----   70 (343)
T KOG1717|consen    5 SKSVAWLNRQLELGNLLLLDCRS----ESSHIESAINVALPALMLRRLT-----GGNLPVRALFPRSCDDKRFPA-----   70 (343)
T ss_pred             HHHHHHHHhhcccCceEEEecCC----ccchhhhhhhhcchHHHHHHHh-----CCCCcceeccCCccccccccc-----
Confidence            57899999999988999999999    5679999999988877654310     000111112222111111110     


Q ss_pred             CCCCCcEEEEcCCCCCCCCCCCCCCchhhHHHHHHHHHHHCCCCceEEccccHHHHHhC
Q 026302          174 LDKDAKIIVACATGGTMKPSQNLPEGQQSRSLIAAYLLVLNGYKNVYHLEGGLYKWFKE  232 (240)
Q Consensus       174 i~~~~~IVvyC~~G~~~~~~~~~~~~~~~rs~~aa~~L~~~G~~nV~~l~GG~~~W~~~  232 (240)
                      -=+...+|.|+.+...|.+-.    |...--...-+.++..|+. ++.|.|||..+..+
T Consensus        71 ~c~~v~vilyD~~~~e~e~~~----~~~s~Lg~ll~kl~~~g~~-a~yL~ggF~~fq~e  124 (343)
T KOG1717|consen   71 RCGTVTVILYDESSAEWEEET----GAESVLGLLLKKLKDEGCS-ARYLSGGFSKFQAE  124 (343)
T ss_pred             cCCcceeeecccccccccccc----hhhhHHHHHHHHHHhcCcc-hhhhhcccchhhhh
Confidence            012357899988744332211    1111111233566778985 99999999887654

>KOG1093 consensus Predicted protein kinase (contains TBC and RHOD domains) [General function prediction only]

Probab=96.07  E-value=0.002  Score=62.51  Aligned_cols=103  Identities=17%  Similarity=0.210  Sum_probs=70.8

Q ss_pred             HhhhcCccccHHHHHHHhcCCCeEEEEcCChhhhhhCCCCCCeeechhhHHhhhhHHHHHHHhhhhhcccCCCCCCcHHH
Q 026302           87 LLQKRVRSVEAKEALRLQKENNFVILDVRPEAEFKEAHPPGAINVQIYRLIKEWTAWDIARRAAFAFFGIFSGTEENPEF  166 (240)
Q Consensus        87 l~~~~~~~Is~~el~~~l~~~~~~lIDvR~~~ey~~ghIpGAinip~~~l~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~  166 (240)
                      +.+..++.|+++++..+   +...++|.|...||..+|+++++|+|++.-+.+.+..        .+          ...
T Consensus       616 l~se~~prmsAedl~~~---~~l~v~d~r~~~ef~r~~~s~s~nip~~~~ea~l~~~--------~~----------l~~  674 (725)
T KOG1093|consen  616 LSSEHCPRISAEDLIWL---KMLYVLDTRQESEFQREHFSDSINIPFNNHEADLDWL--------RF----------LPG  674 (725)
T ss_pred             hhhhcCccccHHHHHHH---HHHHHHhHHHHHHHHHhhccccccCCccchHHHHHHh--------hc----------chH
Confidence            34467889999998887   4678999999999999999999999998433322110        00          000


Q ss_pred             HHHHHhcCCCCCcEEEEcCCCCCCCCCCCCCCchhhHHHHHHHHHHHCCCCceEEccccHHHH
Q 026302          167 LQSVESQLDKDAKIIVACATGGTMKPSQNLPEGQQSRSLIAAYLLVLNGYKNVYHLEGGLYKW  229 (240)
Q Consensus       167 ~~~~~~~i~~~~~IVvyC~~G~~~~~~~~~~~~~~~rs~~aa~~L~~~G~~nV~~l~GG~~~W  229 (240)
                      +     .-..+..+|++.....              .+++....+..+-+.++.++.+|++..
T Consensus       675 ~-----~~~~~~~~v~~~~~~K--------------~~~e~~~~~~~mk~p~~cil~~~~~~~  718 (725)
T KOG1093|consen  675 I-----VCSEGKKCVVVGKNDK--------------HAAERLTELYVMKVPRICILHDGFNNI  718 (725)
T ss_pred             h-----HHhhCCeEEEeccchH--------------HHHHHhhHHHHhcccHHHHHHHHHhhc
Confidence            0     1123445555555443              666677777777788899999999843

>KOG3636 consensus Uncharacterized conserved protein, contains TBC and Rhodanese domains [General function prediction only]

Probab=95.65  E-value=0.14  Score=48.86  Aligned_cols=50  Identities=18%  Similarity=0.334  Sum_probs=36.6

Q ss_pred             CccccHHHHHHHh--cCC--CeEEEEcCChhhhhhCCCCCCeeechhhHHhhhh
Q 026302           92 VRSVEAKEALRLQ--KEN--NFVILDVRPEAEFKEAHPPGAINVQIYRLIKEWT  141 (240)
Q Consensus        92 ~~~Is~~el~~~l--~~~--~~~lIDvR~~~ey~~ghIpGAinip~~~l~~~~~  141 (240)
                      .-.|++-|+.+.-  ..+  .+.|||+||.++|..||+-.|.|+.-.-..++..
T Consensus       306 CLpisv~el~~~~~~~~~~VrFFiVDcRpaeqynaGHlstaFhlDc~lmlqeP~  359 (669)
T KOG3636|consen  306 CLPISVIELTSHDEISSGSVRFFIVDCRPAEQYNAGHLSTAFHLDCVLMLQEPE  359 (669)
T ss_pred             ccchhHHHhhcccccccCceEEEEEeccchhhcccccchhhhcccHHHHhcCHH
Confidence            3456666665432  222  4789999999999999999999998876665543

>PRK00142 putative rhodanese-related sulfurtransferase; Provisional

Probab=95.37  E-value=0.0031  Score=57.49  Aligned_cols=48  Identities=13%  Similarity=0.114  Sum_probs=37.8

Q ss_pred             ccHHHHHHHhcCCCeEEEEcCChhhhhhCCCCCCeeechhhHHhhhhHHH
Q 026302           95 VEAKEALRLQKENNFVILDVRPEAEFKEAHPPGAINVQIYRLIKEWTAWD  144 (240)
Q Consensus        95 Is~~el~~~l~~~~~~lIDvR~~~ey~~ghIpGAinip~~~l~~~~~~~~  144 (240)
                      -+++++++.+.+ ...++|+|....|..+||||++|+|. .-...|.+|.
T Consensus        16 ~~~~~~~~~l~~-~~~~~d~rg~i~~a~egIngtis~~~-~~~~~~~~~l   63 (314)
T PRK00142         16 EDPEAFRDEHLA-LCKSLGLKGRILVAEEGINGTVSGTI-EQTEAYMAWL   63 (314)
T ss_pred             CCHHHHHHHHHH-HHHHcCCeeEEEEcCCCceEEEEecH-HHHHHHHHHH
Confidence            456777777765 56789999999999999999999999 4445565554

>PF04273 DUF442: Putative phosphatase (DUF442); InterPro: IPR005939 Although this domain is uncharacterised it seems likely that it performs a phosphatase function

Probab=95.14  E-value=0.085  Score=40.90  Aligned_cols=26  Identities=15%  Similarity=0.386  Sum_probs=16.9

Q ss_pred             cccHHHHHHHhcCCCeEEEEcCChhh
Q 026302           94 SVEAKEALRLQKENNFVILDVRPEAE  119 (240)
Q Consensus        94 ~Is~~el~~~l~~~~~~lIDvR~~~e  119 (240)
                      .++++++.++.+.+=..||+.|+..|
T Consensus        14 Q~~~~d~~~la~~GfktVInlRpd~E   39 (110)
T PF04273_consen   14 QPSPEDLAQLAAQGFKTVINLRPDGE   39 (110)
T ss_dssp             S--HHHHHHHHHCT--EEEE-S-TTS
T ss_pred             CCCHHHHHHHHHCCCcEEEECCCCCC
Confidence            68999999988875568999998765

; GO: 0016787 hydrolase activity; PDB: 2F46_A 3GXH_B 3GXG_B.

>TIGR01244 conserved hypothetical protein TIGR01244

Probab=94.72  E-value=0.11  Score=41.36  Aligned_cols=28  Identities=14%  Similarity=0.203  Sum_probs=21.3

Q ss_pred             ccccHHHHHHHhcCCCeEEEEcCChhhh
Q 026302           93 RSVEAKEALRLQKENNFVILDVRPEAEF  120 (240)
Q Consensus        93 ~~Is~~el~~~l~~~~~~lIDvR~~~ey  120 (240)
                      ..++++++..+.+.+=..|||.|+..|-
T Consensus        13 ~qlt~~d~~~L~~~GiktVIdlR~~~E~   40 (135)
T TIGR01244        13 PQLTKADAAQAAQLGFKTVINNRPDREE   40 (135)
T ss_pred             CCCCHHHHHHHHHCCCcEEEECCCCCCC
Confidence            3678888887766655689999987764

No member of this family is characterized. The member from Xylella fastidiosa is a longer protein with an N-terminal region described by this model, followed by a metallo-beta-lactamase family domain and an additional C-terminal region. Members scoring above the trusted cutoff are limited to the proteobacteria.

>PF13350 Y_phosphatase3: Tyrosine phosphatase family; PDB: 1YWF_A 2OZ5_B

Probab=92.45  E-value=0.67  Score=37.78  Aligned_cols=113  Identities=19%  Similarity=0.307  Sum_probs=46.5

Q ss_pred             hcCccccHHHHHHHhcCCCeEEEEcCChhhhhhC---CCCCC--eeechhhHHhh----hhH-H---HHHHHhhhh-hcc
Q 026302           90 KRVRSVEAKEALRLQKENNFVILDVRPEAEFKEA---HPPGA--INVQIYRLIKE----WTA-W---DIARRAAFA-FFG  155 (240)
Q Consensus        90 ~~~~~Is~~el~~~l~~~~~~lIDvR~~~ey~~g---hIpGA--inip~~~l~~~----~~~-~---~~~~~~~~~-~~g  155 (240)
                      ..+..++.++...+.+-+=-.|||.|++.|....   .++|.  +|+|+......    ... +   ......-.. +..
T Consensus        25 ~~l~~lt~~d~~~L~~lgI~tIiDLRs~~E~~~~p~~~~~g~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~  104 (164)
T PF13350_consen   25 GNLSNLTEADLERLRELGIRTIIDLRSPTERERAPDPLIDGVQYVHIPIFGDDASSPDKLAELLQSSADAPRGMLEFYRE  104 (164)
T ss_dssp             S--TT--HHHHHHHHHTT--EEEE-S-HHHHHHHS----TT-EEEE--SS-S-TTH----------HHHHHHHHHHHHHH
T ss_pred             CCcCcCCHHHHHHHHhCCCCEEEECCCccccccCCCCCcCCceeeeecccccccccccccccccccccchhhHHHHHHHH
Confidence            4556788888887775444589999999997753   45565  45554322211    000 0   000000000 111


Q ss_pred             cCCC-CCCcHHHHHHHHhcCCCCCcEEEEcCCCCCCCCCCCCCCchhhHHHH-HHHHHHHCCCCc
Q 026302          156 IFSG-TEENPEFLQSVESQLDKDAKIIVACATGGTMKPSQNLPEGQQSRSLI-AAYLLVLNGYKN  218 (240)
Q Consensus       156 ~~~~-~~~~~~~~~~~~~~i~~~~~IVvyC~~G~~~~~~~~~~~~~~~rs~~-aa~~L~~~G~~n  218 (240)
                      +... .+...++++.+   .+...+++|+|..|.+             |.-. ++-.|..+|++.
T Consensus       105 ~~~~~~~~~~~~~~~l---~~~~~p~l~HC~aGKD-------------RTG~~~alll~~lGV~~  153 (164)
T PF13350_consen  105 MLESYAEAYRKIFELL---ADAPGPVLFHCTAGKD-------------RTGVVAALLLSLLGVPD  153 (164)
T ss_dssp             GGGSTHHHHHHHHHHH---H-TT--EEEE-SSSSS-------------HHHHHHHHHHHHTT--H
T ss_pred             HHHhhhHHHHHHHHHh---ccCCCcEEEECCCCCc-------------cHHHHHHHHHHHcCCCH
Confidence            1111 12233333333   2233699999999985             6555 555567789853

>cd00127 DSPc Dual specificity phosphatases (DSP); Ser/Thr and Tyr protein phosphatases

Probab=89.71  E-value=1.1  Score=34.65  Aligned_cols=80  Identities=23%  Similarity=0.259  Sum_probs=42.0

Q ss_pred             CCCeEEEEcCChhhhhhCCCCC--CeeechhhHHhhhhHHHHHHHhhhhhcccCCCCCCcHHHHHHHHhcCCCCCcEEEE
Q 026302          106 ENNFVILDVRPEAEFKEAHPPG--AINVQIYRLIKEWTAWDIARRAAFAFFGIFSGTEENPEFLQSVESQLDKDAKIIVA  183 (240)
Q Consensus       106 ~~~~~lIDvR~~~ey~~ghIpG--Ainip~~~l~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~i~~~~~IVvy  183 (240)
                      .+=..|||+++..++..-+.+|  -.++|+.+......                  ....+.+++-+......+.+|+|+
T Consensus        26 ~gi~~VI~l~~~~~~~~~~~~~~~~~~~~~~D~~~~~~------------------~~~~~~~~~~i~~~~~~~~~vlVH   87 (139)
T cd00127          26 LGITHVLNVAKEVPNENLFLSDFNYLYVPILDLPSQDI------------------SKYFDEAVDFIDDAREKGGKVLVH   87 (139)
T ss_pred             cCCCEEEEcccCCCCcccCCCCceEEEEEceeCCCCCh------------------HHHHHHHHHHHHHHHhcCCcEEEE
Confidence            3345899999888752222233  24566544321000                  000122222232234557899999


Q ss_pred             cCCCCCCCCCCCCCCchhhHHHH--HHHHHHHCCC
Q 026302          184 CATGGTMKPSQNLPEGQQSRSLI--AAYLLVLNGY  216 (240)
Q Consensus       184 C~~G~~~~~~~~~~~~~~~rs~~--aa~~L~~~G~  216 (240)
                      |..|..             ||..  +++.+...|+
T Consensus        88 C~~G~~-------------Rs~~~~~~~l~~~~~~  109 (139)
T cd00127          88 CLAGVS-------------RSATLVIAYLMKTLGL  109 (139)
T ss_pred             CCCCCc-------------hhHHHHHHHHHHHcCC
Confidence            999973             5553  4555565555

Structurally similar to tyrosine-specific phosphatases but with a shallower active site cleft and a distinctive active site signature motif, HCxxGxxR. Characterized as VHR- or Cdc25-like.

>TIGR03167 tRNA_sel_U_synt tRNA 2-selenouridine synthase

Probab=89.33  E-value=0.79  Score=41.85  Aligned_cols=35  Identities=14%  Similarity=0.109  Sum_probs=31.6

Q ss_pred             CccccHHHHHHHhcCCCeEEEEcCChhhhhh---CCCC
Q 026302           92 VRSVEAKEALRLQKENNFVILDVRPEAEFKE---AHPP  126 (240)
Q Consensus        92 ~~~Is~~el~~~l~~~~~~lIDvR~~~ey~~---ghIp  126 (240)
                      ...+...++.+.+.+.++.|||+|+..+|..   ||||
T Consensus       135 ~tg~gKt~Ll~~L~~~~~~VvDlr~~a~hrGs~fG~~~  172 (311)
T TIGR03167       135 MTGSGKTELLHALANAGAQVLDLEGLANHRGSSFGALG  172 (311)
T ss_pred             CCCcCHHHHHHHHhcCCCeEEECCchHHhcCcccCCCC
Confidence            4678899999999888899999999999998   9998

The Escherichia coli YbbB protein was shown to encode a selenophosphate-dependent tRNA 2-selenouridine synthase, essential for modification of some tRNAs to replace a sulfur atom with selenium. This enzyme works with SelD, the selenium donor protein, which also acts in selenocysteine incorporation. Although the members of this protein family show a fairly deep split, sequences from both sides of the split are supported by co-occurence with, and often proximity to, the selD gene.

>smart00195 DSPc Dual specificity phosphatase, catalytic domain

Probab=85.43  E-value=3.9  Score=31.79  Aligned_cols=32  Identities=34%  Similarity=0.570  Sum_probs=22.9

Q ss_pred             cCCCCCcEEEEcCCCCCCCCCCCCCCchhhHHH--HHHHHHHHCCCC
Q 026302          173 QLDKDAKIIVACATGGTMKPSQNLPEGQQSRSL--IAAYLLVLNGYK  217 (240)
Q Consensus       173 ~i~~~~~IVvyC~~G~~~~~~~~~~~~~~~rs~--~aa~~L~~~G~~  217 (240)
                      ....+.+|+|+|..|..             ||.  .+++.+...|++
T Consensus        74 ~~~~~~~VlVHC~~G~~-------------RS~~v~~~yl~~~~~~~  107 (138)
T smart00195       74 AEKKGGKVLVHCQAGVS-------------RSATLIIAYLMKYRNLS  107 (138)
T ss_pred             HhcCCCeEEEECCCCCc-------------hHHHHHHHHHHHHhCCC
Confidence            35778899999999973             554  355556667764

>PF01451 LMWPc: Low molecular weight phosphotyrosine protein phosphatase; InterPro: IPR023485 Protein tyrosine (pTyr) phosphorylation is a common post-translational modification which can create novel recognition motifs for protein interactions and cellular localisation, affect protein stability, and regulate enzyme activity

Probab=80.88  E-value=1.1  Score=35.23  Aligned_cols=37  Identities=22%  Similarity=0.206  Sum_probs=31.8

Q ss_pred             EEEEcCCCCCCCCCCCCCCchhhHHHHHHHHHHHC----CCCceEEccccHHHH
Q 026302          180 IIVACATGGTMKPSQNLPEGQQSRSLIAAYLLVLN----GYKNVYHLEGGLYKW  229 (240)
Q Consensus       180 IVvyC~~G~~~~~~~~~~~~~~~rs~~aa~~L~~~----G~~nV~~l~GG~~~W  229 (240)
                      |+|+|.+..|             ||..|...|+.+    +-.++.+.-.|+.+|
T Consensus         1 ILFvC~~N~c-------------RS~mAEai~~~~~~~~~~~~~~v~SAG~~~~   41 (138)
T PF01451_consen    1 ILFVCTGNIC-------------RSPMAEAILRHLLKQRLGDRFEVESAGTEAW   41 (138)
T ss_dssp             EEEEESSSSS-------------HHHHHHHHHHHHHHHTHTTTEEEEEEESSST
T ss_pred             CEEEeCCCcc-------------hHHHHHHHHHHhccccccCCcEEEEEeeccc
Confidence            7899999988             999999988887    667789998998866

Consequently, maintaining an appropriate level of protein tyrosine phosphorylation is essential for many cellular functions. Tyrosine-specific protein phosphatases (PTPase; 3.1.3.48 from EC) catalyse the removal of a phosphate group attached to a tyrosine residue, using a cysteinyl-phosphate enzyme intermediate. These enzymes are key regulatory components in signal transduction pathways (such as the MAP kinase pathway) and cell cycle control, and are important in the control of cell growth, proliferation, differentiation and transformation [, ]. The PTP superfamily can be divided into four subfamilies []: (1) pTyr-specific phosphatases (2) dual specificity phosphatases (dTyr and dSer/dThr) (3) Cdc25 phosphatases (dTyr and/or dThr) (4) LMW (low molecular weight) phosphatases Based on their cellular localisation, PTPases are also classified as: Receptor-like, which are transmembrane receptors that contain PTPase domains [] Non-receptor (intracellular) PTPases [] All PTPases carry the highly conserved active site motif C(X)5R (PTP signature motif), employ a common catalytic mechanism, and share a similar core structure made of a central parallel beta-sheet with flanking alpha-helices containing a beta-loop-alpha-loop that encompasses the PTP signature motif []. Functional diversity between PTPases is endowed by regulatory domains and subunits. This entry represents the low molecular weight (LMW) protein-tyrosine phosphatases (or acid phosphatase), which act on tyrosine phosphorylated proteins, low-MW aryl phosphates and natural and synthetic acyl phosphates [, ]. The structure of a LMW PTPase has been solved by X-ray crystallography [] and is found to form a single structural domain. It belongs to the alpha/beta class, with 6 alpha-helices and 4 beta-strands forming a 3-layer alpha-beta-alpha sandwich architecture.; PDB: 3RH0_B 1JL3_B 2IPA_B 1Z2D_A 1Z2E_A 2CWD_D 2L18_A 2L17_A 2L19_A 1BVH_A ....

>PLN02727 NAD kinase

Probab=80.66  E-value=4.6  Score=42.03  Aligned_cols=129  Identities=18%  Similarity=0.159  Sum_probs=69.3

Q ss_pred             cCcchhhh--hccccCCCCcceeeccCCCCCCCCCCchhhHHHHH------HHhh------hcCccccHHHHHHHhcCCC
Q 026302           43 VRSFTFSR--RRLSSQSVPRGLIIQNAATKPAKSPAEEDWKTKRE------LLLQ------KRVRSVEAKEALRLQKENN  108 (240)
Q Consensus        43 ~rs~~~~~--~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~------~l~~------~~~~~Is~~el~~~l~~~~  108 (240)
                      .||..-.|  +||+..-...|+..  ..-.|... ..+.|...+-      .+..      .....++++++..+.+.+=
T Consensus       206 ~~~~~~~~~~~~l~~~~~d~~~pr--~~~~p~~~-~~~n~~~v~~~~~~~~~~~~~~~~~~~rsgQpspe~la~LA~~Gf  282 (986)
T PLN02727        206 DRSLDVWRKLQRLKNVCYDAGFPR--SDDYPCHT-LFANWNPVYLSTSKEDIDSKESEAAFWRGGQVTEEGLKWLLEKGF  282 (986)
T ss_pred             CcchhHHHHHHHHHhhhhhcCCCC--CCCCCCcc-cccccceeeecccccccccccceeeEEEeCCCCHHHHHHHHHCCC
Confidence            35544433  78877777777753  22223322 3344554310      1111      2345899999988887744


Q ss_pred             eEEEEcCChhhhhhCCCCCCeeechhhHHhhhhHHHHHHHhhhhhcccCC--CCCCcHHHHHHHHhcC-C-CCCcEEEEc
Q 026302          109 FVILDVRPEAEFKEAHPPGAINVQIYRLIKEWTAWDIARRAAFAFFGIFS--GTEENPEFLQSVESQL-D-KDAKIIVAC  184 (240)
Q Consensus       109 ~~lIDvR~~~ey~~ghIpGAinip~~~l~~~~~~~~~~~~~~~~~~g~~~--~~~~~~~~~~~~~~~i-~-~~~~IVvyC  184 (240)
                      -.||+.|+..|- .+..       .... +     ..+.+.++.+.++..  .....++.++++.+.+ + ..++|++||
T Consensus       283 KTIINLRpd~E~-~q~~-------~~ee-~-----eAae~~GL~yVhIPVs~~~apt~EqVe~fa~~l~~slpkPVLvHC  348 (986)
T PLN02727        283 KTIVDLRAEIVK-DNFY-------QAAV-D-----DAISSGKIEVVKIPVEVRTAPSAEQVEKFASLVSDSSKKPIYLHS  348 (986)
T ss_pred             eEEEECCCCCcC-CCch-------hHHH-H-----HHHHHcCCeEEEeecCCCCCCCHHHHHHHHHHHHhhcCCCEEEEC
Confidence            579999997661 1111       0001 0     112223344444432  2233345555554545 3 578999999


Q ss_pred             CCCC
Q 026302          185 ATGG  188 (240)
Q Consensus       185 ~~G~  188 (240)
                      .+|.
T Consensus       349 KSGa  352 (986)
T PLN02727        349 KEGV  352 (986)
T ss_pred             CCCC
Confidence            9997

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	240
1tq1_A	129	Solution Structure Of At5g66040, A Putative Protein		2e-07

>pdb|1TQ1|A Chain A, Solution Structure Of At5g66040, A Putative Protein From Arabidosis Thaliana Length = 129

Iteration: 1
 Score = 52.4 bits (124), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 37/124 (29%), Positives = 47/124 (37%), Gaps = 33/124 (26%)
Query: 112 LDVRPEAEFKEAHPPGAINVQIYRLIKEWTAWDXXXXXXXXXXXXXSGTEENPEFLQSVE 171
           LDVR   EF + H  GAINV                          SG  +N +FL+ V 
Sbjct: 36  LDVRTPEEFSQGHACGAINVPYMN-------------------RGASGMSKNTDFLEQVS 76
Query: 172 SQLDKDAKIIVACATGGTMKPSQNLPEGQQSRSLIAAYLLVLNGYKNVYHLEGGLYKWFK 231
           S   +   IIV C +GG              RS+ A   L+  G+  V  + GG   W K
Sbjct: 77  SHFGQSDNIIVGCQSGG--------------RSIKATTDLLHAGFTGVKDIVGGYSAWAK 122
Query: 232 EELP 235
             LP
Sbjct: 123 NGLP 126

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	240
1tq1_A	129	AT5G66040, senescence-associated family protein; C	2e-29
3hix_A	106	ALR3790 protein; rhodanese, rhodanese_3, Q8YQN0, Q	2e-22
3ilm_A	141	ALR3790 protein; rhodanese-like, NSR437H, NESG, st	4e-22
2hhg_A	139	Hypothetical protein RPA3614; MCSG, structural gen	1e-21
3d1p_A	139	Putative thiosulfate sulfurtransferase YOR285W; at	2e-21
2k0z_A	110	Uncharacterized protein HP1203; A/B domain, struct	2e-21
1gmx_A	108	GLPE protein; transferase, rhodanese, sulfurtransf	4e-21
2fsx_A	148	RV0390, COG0607: rhodanese-related sulfurtransfera	1e-20
1qxn_A	137	SUD, sulfide dehydrogenase; polysulfide-sulfur tra	1e-20
1vee_A	134	Proline-rich protein family; hypothetical protein,	5e-20
3nhv_A	144	BH2092 protein; alpha-beta protein, structural gen	1e-17
1yt8_A	539	Thiosulfate sulfurtransferase; rhodanase domains,	4e-17
1yt8_A	539	Thiosulfate sulfurtransferase; rhodanase domains,	4e-14
1yt8_A	539	Thiosulfate sulfurtransferase; rhodanase domains,	1e-08
1yt8_A	539	Thiosulfate sulfurtransferase; rhodanase domains,	1e-07
3eme_A	103	Rhodanese-like domain protein; alpha-beta-alpha sa	7e-17
3gk5_A	108	Uncharacterized rhodanese-related protein TVG08686	1e-16
3foj_A	100	Uncharacterized protein; protein SSP1007, structur	2e-16
3tp9_A	474	Beta-lactamase and rhodanese domain protein; struc	4e-16
1t3k_A	152	Arath CDC25, dual-specificity tyrosine phosphatase	6e-16
3flh_A	124	Uncharacterized protein LP_1913; alpha-beta protei	2e-14
1wv9_A	94	Rhodanese homolog TT1651; CDC25, phosphatase, sulf	2e-14
3i2v_A	127	Adenylyltransferase and sulfurtransferase MOCS3; r	3e-14
2jtq_A	85	Phage shock protein E; solution structure rhodanes	7e-14
3g5j_A	134	Putative ATP/GTP binding protein; N-terminal domai	2e-13
3r2u_A	466	Metallo-beta-lactamase family protein; structural	8e-13
3ics_A	588	Coenzyme A-disulfide reductase; pyridine nucleotid	4e-12
2j6p_A	152	SB(V)-AS(V) reductase; arsenate reductase, antimon	6e-11
3ntd_A	565	FAD-dependent pyridine nucleotide-disulphide oxido	2e-10
3f4a_A	169	Uncharacterized protein YGR203W; protein phosphata	4e-10
1c25_A	161	CDC25A; hydrolase, cell cycle phosphatase,dual spe	3e-09
2a2k_A	175	M-phase inducer phosphatase 2; dual specificity, s	1e-08
4f67_A	265	UPF0176 protein LPG2838; structural genomics, PSI-	1e-07
1qb0_A	211	Protein (M-phase inducer phosphatase 2 (CDC25B));	2e-07
3op3_A	216	M-phase inducer phosphatase 3; structural genomics	6e-07
2vsw_A	153	Dual specificity protein phosphatase 16; hydrolase	3e-06
3tg1_B	158	Dual specificity protein phosphatase 10; kinase/rh	4e-06
2ouc_A	142	Dual specificity protein phosphatase 10; rhodanese	6e-06
1e0c_A	271	Rhodanese, sulfurtransferase; sulfur metabolism, t	8e-06
1whb_A	157	KIAA0055; deubiqutinating enzyme, UBPY, structural	3e-05
1hzm_A	154	Dual specificity protein phosphatase 6; hydrolase;	4e-05
2gwf_A	157	Ubiquitin carboxyl-terminal hydrolase 8; protein-p	3e-04
2wlr_A	423	Putative thiosulfate sulfurtransferase YNJE; rhoda	3e-04
2eg4_A	230	Probable thiosulfate sulfurtransferase; structural	4e-04
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	5e-04
3aay_A	277	Putative thiosulfate sulfurtransferase; sulfurtran	7e-04

>1tq1_A AT5G66040, senescence-associated family protein; CESG, structural genomics, protein structure initiative; NMR {Arabidopsis thaliana} SCOP: c.46.1.3 Length = 129

 Score =  105 bits (265), Expect = 2e-29
 Identities = 41/150 (27%), Positives = 54/150 (36%), Gaps = 34/150 (22%)

Query: 89  QKRVRSVEAKEALRLQKENNFVILDVRPEAEFKEAHPPGAINVQIYRLIKEWTAWDIARR 148
            +   SV    A  L    +   LDVR   EF + H  GAINV                 
Sbjct: 14  SRVPSSVSVTVAHDLLLAGH-RYLDVRTPEEFSQGHACGAINVPYMNRG----------- 61

Query: 149 AAFAFFGIFSGTEENPEFLQSVESQLDKDAKIIVACATGGTMKPSQNLPEGQQSRSLIAA 208
                    SG  +N +FL+ V S   +   IIV C +GG              RS+ A 
Sbjct: 62  --------ASGMSKNTDFLEQVSSHFGQSDNIIVGCQSGG--------------RSIKAT 99

Query: 209 YLLVLNGYKNVYHLEGGLYKWFKEELPEVS 238
             L+  G+  V  + GG   W K  LP  +
Sbjct: 100 TDLLHAGFTGVKDIVGGYSAWAKNGLPTKA 129

>3hix_A ALR3790 protein; rhodanese, rhodanese_3, Q8YQN0, Q8YQN0_anAsp, NSR437I, NESG, structural genomics, PSI-2, protein structure initiative; 1.92A {Anabaena SP} PDB: 3k9r_A Length = 106

 Score = 86.9 bits (216), Expect = 2e-22
 Identities = 31/145 (21%), Positives = 46/145 (31%), Gaps = 45/145 (31%)

Query: 95  VEAKEALRLQKENNFVILDVRPEAEFKEAHPPGAINVQIYRLIKEWTAWDIARRAAFAFF 154
           +  K  L    E  F ILDVR  + + + H  GA+ + I                     
Sbjct: 1   MVLKSRLE-WGEPAFTILDVRDRSTYNDGHIMGAMAMPI--------------------- 38

Query: 155 GIFSGTEENPEFLQSVESQLDKDAKIIVACATGGTMKPSQNLPEGQQSRSLIAAYLLVLN 214
                     + +    S L+K   I V  A                 ++  A  LL   
Sbjct: 39  ---------EDLVDRASSSLEKSRDIYVYGAGDE--------------QTSQAVNLLRSA 75

Query: 215 GYKNVYHLEGGLYKWFKEELPEVSE 239
           G+++V  L+GGL  W     P   E
Sbjct: 76  GFEHVSELKGGLAAWKAIGGPTELE 100

>3ilm_A ALR3790 protein; rhodanese-like, NSR437H, NESG, structural genomics, protein structure initiative, northeast structural genomics consortium; 2.26A {Nostoc SP} PDB: 2kl3_A Length = 141

 Score = 87.5 bits (217), Expect = 4e-22
 Identities = 28/144 (19%), Positives = 45/144 (31%), Gaps = 44/144 (30%)

Query: 92  VRSVEAKEALRLQKENNFVILDVRPEAEFKEAHPPGAINVQIYRLIKEWTAWDIARRAAF 151
           +      ++     E  F ILDVR  + + + H  GA+ + I                  
Sbjct: 1   MSDAHVLKSRLEWGEPAFTILDVRDRSTYNDGHIMGAMAMPI------------------ 42

Query: 152 AFFGIFSGTEENPEFLQSVESQLDKDAKIIVACATGGTMKPSQNLPEGQQSRSLIAAYLL 211
                        + +    S L+K   I V  A                 ++  A  LL
Sbjct: 43  ------------EDLVDRASSSLEKSRDIYVYGAGDE--------------QTSQAVNLL 76

Query: 212 VLNGYKNVYHLEGGLYKWFKEELP 235
              G+++V  L+GGL  W     P
Sbjct: 77  RSAGFEHVSELKGGLAAWKAIGGP 100

>2hhg_A Hypothetical protein RPA3614; MCSG, structural genomics, rohopseudom palustris, PSI-2, protein structure initiative; 1.20A {Rhodopseudomonas palustris} Length = 139

 Score = 86.6 bits (215), Expect = 1e-21
 Identities = 32/160 (20%), Positives = 56/160 (35%), Gaps = 42/160 (26%)

Query: 81  KTKRELLLQ--KRVRSVEAKEALRLQKEN--NFVILDVRPEAEF-KEAHPPGAINVQIYR 135
           +  + +L +    + ++   +A+ L K    + VI+D+R   E  ++   PG+ +    R
Sbjct: 8   RGIKAMLDEANSSIETLTTADAIALHKSGASDVVIVDIRDPREIERDGKIPGSFS--CTR 65

Query: 136 LIKEWTAWDIARRAAFAFFGIFSGTEENPEFLQSVESQLDKDAKIIVACATGGTMKPSQN 195
            + E+                     ++P           +D K +  CA G        
Sbjct: 66  GMLEFWID-----------------PQSPYAK----PIFQEDKKFVFYCAGGL------- 97

Query: 196 LPEGQQSRSLIAAYLLVLNGYKNVYHLEGGLYKWFKEELP 235
                  RS +AA      G K V H+EGG   W     P
Sbjct: 98  -------RSALAAKTAQDMGLKPVAHIEGGFGAWRDAGGP 130

>3d1p_A Putative thiosulfate sulfurtransferase YOR285W; atomic structure, atomic resolution structure, PSI, MCSG; HET: MSE; 0.98A {Saccharomyces cerevisiae} Length = 139

 Score = 85.6 bits (212), Expect = 2e-21
 Identities = 24/142 (16%), Positives = 44/142 (30%), Gaps = 33/142 (23%)

Query: 96  EAKEALRLQKENNFVILDVRPEAEFKEAHPPGAINVQIYRLIKEWTAWDIARRAAFAFFG 155
           + K  +  + + N V++DVR  +E+   H P +INV        +    +          
Sbjct: 29  DMKRIVG-KHDPNVVLVDVREPSEYSIVHIPASINVPYRSHPDAFALDPLEFEKQIGI-- 85

Query: 156 IFSGTEENPEFLQSVESQLDKDAKIIVACATGGTMKPSQNLPEGQQSRSLIAAYLLVLNG 215
                            + D   ++I  CA+G               R   A  +   +G
Sbjct: 86  ----------------PKPDSAKELIFYCASGK--------------RGGEAQKVASSHG 115

Query: 216 YKNVYHLEGGLYKWFKEELPEV 237
           Y N     G +  W      ++
Sbjct: 116 YSNTSLYPGSMNDWVSHGGDKL 137

>2k0z_A Uncharacterized protein HP1203; A/B domain, structural genomics, unknown function, PSI-2, PR structure initiative; NMR {Helicobacter pylori} Length = 110

 Score = 84.7 bits (210), Expect = 2e-21
 Identities = 31/145 (21%), Positives = 51/145 (35%), Gaps = 44/145 (30%)

Query: 96  EAKEALRLQKENNFVILDVRPEAEFKEAHPPGAINVQIYRLIKEWTAWDIARRAAFAFFG 155
           +   +L     N+F+++DVR   E++E H P A  + +          D  + A      
Sbjct: 4   DYAISLEEVNFNDFIVVDVRELDEYEELHLPNATLISVN---------DQEKLAD----- 49

Query: 156 IFSGTEENPEFLQSVESQLDKDAKIIVACATGGTMKPSQNLPEGQQSRSLIAAYLLVLNG 215
                               KD K+++ C  G               R+L AA  +   G
Sbjct: 50  ---------------FLSQHKDKKVLLHCRAGR--------------RALDAAKSMHELG 80

Query: 216 YKNVYHLEGGLYKWFKEELPEVSEE 240
           Y   Y LEG +Y + K     V ++
Sbjct: 81  YTPYY-LEGNVYDFEKYGFRMVYDD 104

>1gmx_A GLPE protein; transferase, rhodanese, sulfurtransferase, glycerol metabolism; 1.1A {Escherichia coli} SCOP: c.46.1.3 PDB: 1gn0_A Length = 108

 Score = 83.8 bits (208), Expect = 4e-21
 Identities = 28/148 (18%), Positives = 48/148 (32%), Gaps = 45/148 (30%)

Query: 91  RVRSVEAKEALRLQKENNFVILDVRPEAEFKEAHPPGAINVQIYRLIKEWTAWDIARRAA 150
           +   +   +A +  +E   V++D+R    F   H   A ++    L              
Sbjct: 3   QFECINVADAHQKLQEKEAVLVDIRDPQSFAMGHAVQAFHLTNDTL-------------- 48

Query: 151 FAFFGIFSGTEENPEFLQSVESQLDKDAKIIVACATGGTMKPSQNLPEGQQSRSLIAAYL 210
                          F++      D D  ++V C  G                S  AA  
Sbjct: 49  -------------GAFMR----DNDFDTPVMVMCYHGN--------------SSKGAAQY 77

Query: 211 LVLNGYKNVYHLEGGLYKWFKEELPEVS 238
           L+  GY  VY ++GG   W ++   EV+
Sbjct: 78  LLQQGYDVVYSIDGGFEAWQRQFPAEVA 105

>2fsx_A RV0390, COG0607: rhodanese-related sulfurtransferase; RV0390 BR SAD DATA with FBAR, structural genomics, PSI; 1.80A {Mycobacterium tuberculosis} Length = 148

 Score = 84.3 bits (208), Expect = 1e-20
 Identities = 27/148 (18%), Positives = 46/148 (31%), Gaps = 35/148 (23%)

Query: 92  VRSVEAKEALR-LQKENNFVILDVRPEAEFKEAHPPGAINVQIYRLIKEWTAWDIARRAA 150
              +   +A   L      V++DVR EAE++    P   ++    +  EW   D      
Sbjct: 4   AGDITPLQAWEMLSDNPRAVLVDVRCEAEWRFVGVPDLSSLGREVVYVEWATSDGTH--- 60

Query: 151 FAFFGIFSGTEENPEFLQSVESQL-----DKDAKIIVACATGGTMKPSQNLPEGQQSRSL 205
                       N  FL  +  ++       +  +I  C +G               RS+
Sbjct: 61  ------------NDNFLAELRDRIPADADQHERPVIFLCRSGN--------------RSI 94

Query: 206 IAAYLLVLNGYKNVYHLEGGLYKWFKEE 233
            AA +    G    Y++  G       E
Sbjct: 95  GAAEVATEAGITPAYNVLDGFEGHLDAE 122

>1qxn_A SUD, sulfide dehydrogenase; polysulfide-sulfur transferase, homodimer; NMR {Wolinella succinogenes} SCOP: c.46.1.3 Length = 137

 Score = 83.9 bits (208), Expect = 1e-20
 Identities = 35/165 (21%), Positives = 60/165 (36%), Gaps = 47/165 (28%)

Query: 81  KTKRELLLQ--KRVRSVEAKEALRLQKEN-NFVILDVRPEAEFKEAHPPGAIN-VQIYR- 135
            T +  +      +  +  K+A +L +EN +  ++DVR   E K    P   N   + R 
Sbjct: 9   ATFKAQVKAAKADMVMLSPKDAYKLLQENPDITLIDVRDPDELKAMGKPDVKNYKHMSRG 68

Query: 136 LIKEWTAWDIARRAAFAFFGIFSGTEENPEFLQSVESQLDKDAKIIVACATGGTMKPSQN 195
            ++   A                            +S LD +  ++V C T         
Sbjct: 69  KLEPLLA----------------------------KSGLDPEKPVVVFCKTAA------- 93

Query: 196 LPEGQQSRSLIAAYLLVLNGYKNVYHLEGGLYKWFKEELPEVSEE 240
                  R+ +A   L   G+K +Y+ EGG+ KW +E LP +   
Sbjct: 94  -------RAALAGKTLREYGFKTIYNSEGGMDKWLEEGLPSLDRS 131

>1vee_A Proline-rich protein family; hypothetical protein, structural genomics, rhodanese domain, riken structural genomics/proteomics initiative; NMR {Arabidopsis thaliana} PDB: 2dcq_A Length = 134

 Score = 82.0 bits (202), Expect = 5e-20
 Identities = 29/150 (19%), Positives = 53/150 (35%), Gaps = 38/150 (25%)

Query: 92  VRSVEAKEAL-RLQKENNFVILDVRPEAEFKEAHPPGAINVQIYRLIKEWTAWDIARRAA 150
             S  AK A  +L  ++N  +LD+R  A+F++   P    +    +   +   D      
Sbjct: 4   GSSGSAKNAYTKLGTDDNAQLLDIRATADFRQVGSPNIKGLGKKAVSTVYNGED------ 57

Query: 151 FAFFGIFSGTEENPEFLQSVESQL--DKDAKIIVACATGGTMKPSQNLPEGQQSRSLIAA 208
                        P FL+ +  +    ++  + +     G               S + A
Sbjct: 58  ------------KPGFLKKLSLKFKDPENTTLYILDKFDG--------------NSELVA 91

Query: 209 YLLVLNGYKNVYHLEGGL---YKWFKEELP 235
            L+ LNG+K+ Y ++ G      W    LP
Sbjct: 92  ELVALNGFKSAYAIKDGAEGPRGWLNSSLP 121

>3nhv_A BH2092 protein; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium, NESG; 2.50A {Bacillus halodurans} PDB: 3o3w_A Length = 144

 Score = 75.6 bits (186), Expect = 1e-17
 Identities = 26/147 (17%), Positives = 43/147 (29%), Gaps = 48/147 (32%)

Query: 96  EAKEALRLQKENNFVILDVRPEAEFKEAHPPGAINVQIYRLIKEWTAWDIARRAAFAFFG 155
           +    ++   E   +++DVR    +KE H P AI++                        
Sbjct: 22  DLSIDIKKGYEG-IIVVDVRDAEAYKECHIPTAISI------------------------ 56

Query: 156 IFSGTEENP--EFLQSVESQLDKDAKIIVACATGGTMKPSQNLPEGQQSRSLIAAYLLVL 213
                   P  +  +    +L K+  II  C                 + +  AA     
Sbjct: 57  --------PGNKINEDTTKRLSKEKVIITYCWGPAC------------NGATKAAAKFAQ 96

Query: 214 NGYKNVYHLEGGLYKWFKEELPEVSEE 240
            G+  V  L GG+  W KE        
Sbjct: 97  LGF-RVKELIGGIEYWRKENGEVEGTL 122

>1yt8_A Thiosulfate sulfurtransferase; rhodanase domains, cyanide detoxification, structural genomics, PSI, protein structure initiative; 1.90A {Pseudomonas aeruginosa} SCOP: c.46.1.2 c.46.1.2 c.46.1.2 c.46.1.2 Length = 539

 Score = 79.0 bits (194), Expect = 4e-17
 Identities = 29/147 (19%), Positives = 43/147 (29%), Gaps = 44/147 (29%)

Query: 90  KRVRSVEAKEAL-RLQKENNFVILDVRPEAEFKEAHPPGAINVQIYRLIKEWTAWDIARR 148
            ++      +    L       +LDVR E  F +AHP  A N+ + RL +      +   
Sbjct: 4   SQIAVRTFHDIRAALLARRELALLDVREEDPFAQAHPLFAANLPLSRL-ELEIHARVP-- 60

Query: 149 AAFAFFGIFSGTEENPEFLQSVESQLDKDAKIIVACATGGTMKPSQNLPEGQQSRSLIAA 208
                                      +D  I V     G               + +AA
Sbjct: 61  --------------------------RRDTPITVYDDGEG--------------LAPVAA 80

Query: 209 YLLVLNGYKNVYHLEGGLYKWFKEELP 235
             L   GY +V  L+GGL  W      
Sbjct: 81  QRLHDLGYSDVALLDGGLSGWRNAGGE 107

>1yt8_A Thiosulfate sulfurtransferase; rhodanase domains, cyanide detoxification, structural genomics, PSI, protein structure initiative; 1.90A {Pseudomonas aeruginosa} SCOP: c.46.1.2 c.46.1.2 c.46.1.2 c.46.1.2 Length = 539

 Score = 70.1 bits (171), Expect = 4e-14
 Identities = 22/143 (15%), Positives = 39/143 (27%), Gaps = 45/143 (31%)

Query: 93  RSVEAKEALRLQKENNFVILDVRPEAEFKEAHPPGAINVQIYRLIKEWTAWDIARRAAFA 152
            +++         E    +LD    A + + H PGA  V   +L                
Sbjct: 377 DTIDPTTLADWLGEPGTRVLDFTASANYAKRHIPGAAWVLRSQL---------------- 420

Query: 153 FFGIFSGTEENPEFLQSVESQLDKDAKIIVACATGGTMKPSQNLPEGQQSRSLIAAYLLV 212
                       + L     +L    + ++ C +                 +  A   + 
Sbjct: 421 -----------KQAL----ERLGTAERYVLTCGSSL--------------LARFAVAEVQ 451

Query: 213 LNGYKNVYHLEGGLYKWFKEELP 235
               K V+ L+GG   W    LP
Sbjct: 452 ALSGKPVFLLDGGTSAWVAAGLP 474

>1yt8_A Thiosulfate sulfurtransferase; rhodanase domains, cyanide detoxification, structural genomics, PSI, protein structure initiative; 1.90A {Pseudomonas aeruginosa} SCOP: c.46.1.2 c.46.1.2 c.46.1.2 c.46.1.2 Length = 539

 Score = 54.0 bits (129), Expect = 1e-08
 Identities = 37/166 (22%), Positives = 48/166 (28%), Gaps = 46/166 (27%)

Query: 67  AATKPAKSPAEEDWKTKRELLLQKR-VRSVEAKE-ALRLQKENNFVILDVRPEAEFKEAH 124
            A            K   EL+  +R   S+ A+E    L      VILD R   E++   
Sbjct: 103 NAGGELFRDVNVPSKAFGELVEAERHTPSLAAEEVQALLDARAEAVILDARRFDEYQTMS 162

Query: 125 PPGAINVQIYRLIKEWTAWDIARRAAFAFFGIFSGTEENPEFLQSVESQLDKDAKIIVAC 184
            PG I+V    L           R A                    E   D   ++IV C
Sbjct: 163 IPGGISVPGAEL---------VLRVA--------------------ELAPDPRTRVIVNC 193

Query: 185 ATGGTMKPSQNLPEGQQSRSLIAAYLLVLNGYKNVYH-LEGGLYKW 229
           A                 RS+I    L+  G  N    L  G   W
Sbjct: 194 AGRT--------------RSIIGTQSLLNAGIPNPVAALRNGTIGW 225

>1yt8_A Thiosulfate sulfurtransferase; rhodanase domains, cyanide detoxification, structural genomics, PSI, protein structure initiative; 1.90A {Pseudomonas aeruginosa} SCOP: c.46.1.2 c.46.1.2 c.46.1.2 c.46.1.2 Length = 539

 Score = 51.3 bits (122), Expect = 1e-07
 Identities = 24/154 (15%), Positives = 51/154 (33%), Gaps = 46/154 (29%)

Query: 81  KTKRELLLQKRVRSVEAKEALRLQKENN--FVILDVRPEAEFKEAHPPGAINVQIYRLIK 138
           +  R +  +  V  ++     + Q E++    +LDVR   E++  H PG+ +    +L++
Sbjct: 253 QRARAVADRAGVERLDLAGLAQWQDEHDRTTYLLDVRTPEEYEAGHLPGSRSTPGGQLVQ 312

Query: 139 EWTAWDIARRAAFAFFGIFSGTEENPEFLQSVESQLDKDAKIIVACATGGTMKPSQNLPE 198
           E                                    + A++++    G           
Sbjct: 313 ETDHVAS-----------------------------VRGARLVLVDDDG----------- 332

Query: 199 GQQSRSLIAAYLLVLNGYKNVYHLEGGLYKWFKE 232
               R+ ++A  L   G++    L+G     F E
Sbjct: 333 ---VRANMSASWLAQMGWQV-AVLDGLSEADFSE 362

>3gk5_A Uncharacterized rhodanese-related protein TVG0868615; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 2.40A {Thermoplasma volcanium GSS1} Length = 108

 Score = 72.2 bits (178), Expect = 1e-16
 Identities = 34/148 (22%), Positives = 48/148 (32%), Gaps = 48/148 (32%)

Query: 92  VRSVEAKEALRLQKENNFVILDVRPEAEFKEAHPPGAINVQIYRLIKEWTAWDIARRAAF 151
            RS+ A +    +    + +LDVR   E        +IN+ I  L               
Sbjct: 3   YRSINAADLY--ENIKAYTVLDVREPFELIFGSIANSINIPISEL--------------- 45

Query: 152 AFFGIFSGTEENPEFLQSVESQLDKDAKIIVACATGGTMKPSQNLPEGQQSRSLIAAYLL 211
                        E  +     L++D K  V CA G               RS  A   L
Sbjct: 46  ------------REKWK----ILERDKKYAVICAHGN--------------RSAAAVEFL 75

Query: 212 VLNGYKNVYHLEGGLYKWFKEELPEVSE 239
              G  N+  +EGG+  W +E  P V E
Sbjct: 76  SQLGL-NIVDVEGGIQSWIEEGYPVVLE 102

>3foj_A Uncharacterized protein; protein SSP1007, structural genomics, PSI-2, protein structure initiative; 1.60A {Staphylococcus saprophyticus subsp} Length = 100

 Score = 71.5 bits (176), Expect = 2e-16
 Identities = 26/145 (17%), Positives = 43/145 (29%), Gaps = 47/145 (32%)

Query: 92  VRSVEAKE-ALRLQKENNFVILDVRPEAEFKEAHPPGAINVQIYRLIKEWTAWDIARRAA 150
           + S+   E   ++   N   I+DVR + E      PGA  + +           I     
Sbjct: 1   MESITVTELKEKILDANPVNIVDVRTDQETAMGIIPGAETIPMN---------SIPDNL- 50

Query: 151 FAFFGIFSGTEENPEFLQSVESQLDKDAKIIVACATGGTMKPSQNLPEGQQSRSLIAAYL 210
                                +  + +    + C  GG              RS      
Sbjct: 51  ---------------------NYFNDNETYYIICKAGG--------------RSAQVVQY 75

Query: 211 LVLNGYKNVYHLEGGLYKWFKEELP 235
           L  NG  N  ++EGG+ ++  E L 
Sbjct: 76  LEQNGV-NAVNVEGGMDEFGDEGLE 99

>3tp9_A Beta-lactamase and rhodanese domain protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG; 2.70A {Alicyclobacillus acidocaldarius subsp} Length = 474

 Score = 75.8 bits (186), Expect = 4e-16
 Identities = 30/145 (20%), Positives = 46/145 (31%), Gaps = 45/145 (31%)

Query: 91  RVRSVEAKEALRLQKENNFVILDVRPEAEFKEAHPPGAINVQIYRLIKEWTAWDIARRAA 150
              +V   E      +    +LDVR   E+   H P A ++ + +L              
Sbjct: 372 SYANVSPDEVRGALAQQGLWLLDVRNVDEWAGGHLPQAHHIPLSKLAAHI---------- 421

Query: 151 FAFFGIFSGTEENPEFLQSVESQLDKDAKIIVACATGGTMKPSQNLPEGQQSRSLIAAYL 210
                                  + +D  + V C TGG              RS IAA L
Sbjct: 422 ---------------------HDVPRDGSVCVYCRTGG--------------RSAIAASL 446

Query: 211 LVLNGYKNVYHLEGGLYKWFKEELP 235
           L  +G  +V ++ GG   W  +  P
Sbjct: 447 LRAHGVGDVRNMVGGYEAWRGKGFP 471

>1t3k_A Arath CDC25, dual-specificity tyrosine phosphatase; cell cycle, phosphorylation, plant, hydrolase; NMR {Arabidopsis thaliana} SCOP: c.46.1.1 Length = 152

 Score = 71.5 bits (175), Expect = 6e-16
 Identities = 23/156 (14%), Positives = 42/156 (26%), Gaps = 48/156 (30%)

Query: 88  LQKRVRSVEAKEALRLQKENNFVILDVRPEAEFKEAHPPGAINVQIYRLIKEWTAWDIAR 147
           + + +  + + + L L +  N  I+DVR E    + H  G+++                 
Sbjct: 23  MARSISYITSTQLLPLHRRPNIAIIDVRDEERNYDGHIAGSLHYASGSF----------- 71

Query: 148 RAAFAFFGIFSGTEENPEFLQSVESQLDKDAKIIVACATGGTMKPSQNLPEGQQSRSLIA 207
                            + +  +   +     ++   A                 R    
Sbjct: 72  ----------------DDKISHLVQNVKDKDTLVFHSALSQ-------------VRGPTC 102

Query: 208 AYLLVLN--------GYKNVYHLEGGLYKWFKEELP 235
           A  LV          G KN+  LE G   W     P
Sbjct: 103 ARRLVNYLDEKKEDTGIKNIMILERGFNGWEASGKP 138

>3flh_A Uncharacterized protein LP_1913; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 2.00A {Lactobacillus plantarum} PDB: 3fnj_A 3i3u_A Length = 124

 Score = 67.0 bits (164), Expect = 2e-14
 Identities = 30/141 (21%), Positives = 46/141 (32%), Gaps = 46/141 (32%)

Query: 96  EAKEALRLQKENNFVILDVRP-EAEFKEAHPPGAINVQIYRLIKEWTAWDIARRAAFAFF 154
                ++      +V+LDVR   A+ K+    GAI +            D+A R      
Sbjct: 21  TVLADMQ-NATGKYVVLDVRNAPAQVKKDQIKGAIAMPAK---------DLATRIG---- 66

Query: 155 GIFSGTEENPEFLQSVESQLDKDAKIIVACATGGTMKPSQNLPEGQQSRSLIAAYLLVLN 214
                             +LD     +V   TGGT            +    A  +L+  
Sbjct: 67  ------------------ELDPAKTYVVYDWTGGT------------TLGKTALLVLLSA 96

Query: 215 GYKNVYHLEGGLYKWFKEELP 235
           G++  Y L G L  W   +LP
Sbjct: 97  GFE-AYELAGALEGWKGMQLP 116

>1wv9_A Rhodanese homolog TT1651; CDC25, phosphatase, sulfurtransferase, structural genomics, NPPSFA; 2.00A {Thermus thermophilus} Length = 94

 Score = 66.1 bits (162), Expect = 2e-14
 Identities = 26/138 (18%), Positives = 41/138 (29%), Gaps = 48/138 (34%)

Query: 92  VRSVEAKEALRLQKENNFVILDVRPEAEFKEAHPPGAINVQIYRLIKEWTAWDIARRAAF 151
           +R V  +E   L +E   +++DVRP        P  A  V + ++               
Sbjct: 1   MRKVRPEELPALLEEG-VLVVDVRPADRRSTPLPFAAEWVPLEKI--------------- 44

Query: 152 AFFGIFSGTEENPEFLQSVESQLDKDAKIIVACATGGTMKPSQNLPEGQQSRSLIAAYLL 211
                        +        L +   +++ C  G                S +AA  L
Sbjct: 45  ------------QKGE----HGLPRR-PLLLVCEKGL--------------LSQVAALYL 73

Query: 212 VLNGYKNVYHLEGGLYKW 229
              GY     LEGGL   
Sbjct: 74  EAEGY-EAMSLEGGLQAL 90

>3i2v_A Adenylyltransferase and sulfurtransferase MOCS3; rhodanese, UBA4, structural genomics, ubiquitin biology, structural genomics consortium, SGC; 1.25A {Homo sapiens} Length = 127

 Score = 66.3 bits (162), Expect = 3e-14
 Identities = 27/148 (18%), Positives = 43/148 (29%), Gaps = 36/148 (24%)

Query: 91  RVRSVEAKEALRLQKENNFVILDVRPEAEFKEAHPPGAINVQIYRLIKEWTAWDIARRAA 150
           RV   + K    L      ++LDVRP+ E      P A+++ +           + RR  
Sbjct: 2   RVSVTDYKR--LLDSGAFHLLLDVRPQVEVDICRLPHALHIPL---------KHLERRD- 49

Query: 151 FAFFGIFSGTEENPEFLQSVESQLDKDAKIIVACATGGTMKPSQNLPEGQQSRSLIAAYL 210
                      +   + +   +Q      I V C  G                S  A  +
Sbjct: 50  ----AESLKLLKEAIWEEKQGTQEGAAVPIYVICKLGN--------------DSQKAVKI 91

Query: 211 LVLNGYK------NVYHLEGGLYKWFKE 232
           L             V  + GGL  W  +
Sbjct: 92  LQSLSAAQELDPLTVRDVVGGLMAWAAK 119

>2jtq_A Phage shock protein E; solution structure rhodanese, stress response, transferase; NMR {Escherichia coli} PDB: 2jtr_A 2jts_A Length = 85

 Score = 64.1 bits (157), Expect = 7e-14
 Identities = 24/120 (20%), Positives = 40/120 (33%), Gaps = 44/120 (36%)

Query: 110 VILDVRPEAEFKEAHPPGAINVQIYRLIKEWTAWDIARRAAFAFFGIFSGTEENPEFLQS 169
             +DVR   ++++ H  GAIN+ +          ++  R A                   
Sbjct: 3   HWIDVRVPEQYQQEHVQGAINIPLK---------EVKERIA------------------- 34

Query: 170 VESQLDKDAKIIVACATGGTMKPSQNLPEGQQSRSLIAAYLLVLNGYKNVYHLEGGLYKW 229
             +  DK+  + V C  G               +S  A  +L   GY +V +  GGL   
Sbjct: 35  -TAVPDKNDTVKVYCNAGR--------------QSGQAKEILSEMGYTHVENA-GGLKDI 78

>3g5j_A Putative ATP/GTP binding protein; N-terminal domain of ATP/GTP binding protein, PSI, MCSG, STR genomics, protein structure initiative; HET: PGE; 1.76A {Clostridium difficile} Length = 134

 Score = 64.0 bits (155), Expect = 2e-13
 Identities = 32/147 (21%), Positives = 53/147 (36%), Gaps = 20/147 (13%)

Query: 94  SVEAKEALRLQKENNFVILDVRPEAEFKEAHPPGAINVQIY----RLIKEWTAWDIARRA 149
           ++   +  +  K +  + +DVR E E++E H   AIN+ ++                +  
Sbjct: 3   AMSVIKIEKALKLDKVIFVDVRTEGEYEEDHILNAINMPLFKNNEHNEVGTIYKMQGKHE 62

Query: 150 AFAFFGIFSGTEENPEFLQSVESQLDKDAKIIVACATGGTMKPSQNLPEGQQSRSLIAAY 209
           A    G    + +  +              I++ CA GG              RS     
Sbjct: 63  AIQ-KGFDYVSYKLKDIYLQAAELALNYDNIVIYCARGG-------------MRSGSIVN 108

Query: 210 LLVLNGYKNVYHLEGGLYKWFKEELPE 236
           LL   G   VY LEGG YK ++  + E
Sbjct: 109 LLSSLGVN-VYQLEGG-YKAYRNFVLE 133

>3r2u_A Metallo-beta-lactamase family protein; structural genomics, for structural genomics of infectious diseases, csgid, HYDR; 2.10A {Staphylococcus aureus} Length = 466

 Score = 66.2 bits (161), Expect = 8e-13
 Identities = 25/125 (20%), Positives = 39/125 (31%), Gaps = 45/125 (36%)

Query: 105 KENNFVILDVRPEAEFKEAHPPGAINVQIYRLIKEWTAWDIARRAAFAFFGIFSGTEENP 164
             N   ILDVR + E+   H   A++V   +L++                          
Sbjct: 384 TGNESHILDVRNDNEWNNGHLSQAVHVPHGKLLETD------------------------ 419

Query: 165 EFLQSVESQLDKDAKIIVACATGGTMKPSQNLPEGQQSRSLIAAYLLVLNGYKNVYHLEG 224
                     +K+  I V C +G               RS IA  +L   GY N+ ++  
Sbjct: 420 -------LPFNKNDVIYVHCQSGI--------------RSSIAIGILEHKGYHNIINVNE 458

Query: 225 GLYKW 229
           G    
Sbjct: 459 GYKDI 463

>3ics_A Coenzyme A-disulfide reductase; pyridine nucleotide-disulfide oxidoreductase class I, rhodan coenzyme A, flavin adenine dinucleotide; HET: FAD COA ADP; 1.94A {Bacillus anthracis} PDB: 3icr_A* 3ict_A* Length = 588

 Score = 64.2 bits (157), Expect = 4e-12
 Identities = 32/150 (21%), Positives = 54/150 (36%), Gaps = 48/150 (32%)

Query: 87  LLQKRVRSVEAKEALRLQKENNFVILDVRPEAEFKEAHPPGAINVQIYRLIKEWTAWDIA 146
           ++   V +V+  E +    EN   ++DVR   E K+    G+IN+ +  L          
Sbjct: 483 IVDGFVDTVQWHE-IDRIVENGGYLIDVREPNELKQGMIKGSINIPLDEL---------- 531

Query: 147 RRAAFAFFGIFSGTEENPEFLQSVESQLDKDAKIIVACATGGTMKPSQNLPEGQQSRSLI 206
            R                        ++  D  I + C  G               R  +
Sbjct: 532 -RDRL--------------------EEVPVDKDIYITCQLG--------------MRGYV 556

Query: 207 AAYLLVLNGYKNVYHLEGGLYKWFKEELPE 236
           AA +L+  GY  V +++GG +K +   LPE
Sbjct: 557 AARMLMEKGY-KVKNVDGG-FKLYGTVLPE 584

>2j6p_A SB(V)-AS(V) reductase; arsenate reductase, antimonate reductase, CDC25 phosphatase, rhodanese, C-MYC epitope, oxidoreductase; HET: EPE; 2.15A {Leishmania major} Length = 152

 Score = 58.1 bits (140), Expect = 6e-11
 Identities = 21/145 (14%), Positives = 35/145 (24%), Gaps = 35/145 (24%)

Query: 90  KRVRSVEAKEALRLQKE-NNFVILDVRPEAEFKEAHPPGAINVQIYRLIKEWTAWDIARR 148
             ++  E  E L          ++D R   +        +IN+                 
Sbjct: 5   TYIKPEELVELLDNPDSLVKAAVIDCRDS-DRDCGFIVNSINMPTISCT----------- 52

Query: 149 AAFAFFGIFSGTEENPEFLQSVESQLDKDAKIIVACATGGTMKPSQNLPEGQQSRSLIAA 208
                       EE  E L     +  K+   +  CA               +  +  A 
Sbjct: 53  ------------EEMYEKLAKTLFEEKKE-LAVFHCAQSLV--------RAPKGANRFAL 91

Query: 209 YLLVLN-GYKNVYHLEGGLYKWFKE 232
               L      VY L GG   ++  
Sbjct: 92  AQKKLGYVLPAVYVLRGGWEAFYHM 116

>3ntd_A FAD-dependent pyridine nucleotide-disulphide oxidoreductase; COA, persulfide reductase, rhodanese; HET: COA FAD; 1.99A {Shewanella loihica} PDB: 3nta_A* 3nt6_A* Length = 565

 Score = 59.1 bits (144), Expect = 2e-10
 Identities = 27/143 (18%), Positives = 47/143 (32%), Gaps = 48/143 (33%)

Query: 87  LLQKRVRSVEAKEALRLQKENNFVILDVRPEAEFKEAHPPGAINVQIYRLIKEWTAWDIA 146
           +++     +   +   L +  + ++LDVR   E +     GA+N+ +  L          
Sbjct: 467 IIKGDATPIHFDQIDNLSE--DQLLLDVRNPGELQNGGLEGAVNIPVDEL---------- 514

Query: 147 RRAAFAFFGIFSGTEENPEFLQSVESQLDKDAKIIVACATGGTMKPSQNLPEGQQSRSLI 206
            R                        +L KD +II+    G               R  +
Sbjct: 515 -RDRM--------------------HELPKDKEIIIFSQVG--------------LRGNV 539

Query: 207 AAYLLVLNGYKNVYHLEGGLYKW 229
           A   LV NGY+   +L GG   +
Sbjct: 540 AYRQLVNNGYR-ARNLIGGYRTY 561

>3f4a_A Uncharacterized protein YGR203W; protein phosphatase, rhodanese-like family, structural genomics, PSI-2, protein structure initiative; HET: MSE; 1.80A {Saccharomyces cerevisiae} PDB: 3fs5_A* Length = 169

 Score = 56.3 bits (135), Expect = 4e-10
 Identities = 21/158 (13%), Positives = 41/158 (25%), Gaps = 33/158 (20%)

Query: 90  KRVRSVEAKEALRLQKEN----NFVILDVRPEAEFKEAHPPGAINVQIYRLIKEWTAWDI 145
           K +   E    ++          F ++DVR   ++   H     +    RL ++      
Sbjct: 31  KYLDPTELHRWMQEGHTTTLREPFQVVDVRGS-DYMGGHIKDGWHYAYSRLKQD------ 83

Query: 146 ARRAAFAFFGIFSGTEENPEFLQSVESQLDKDAKIIVACATGGTMKPSQNLPEGQQSRSL 205
                           E    L   ++       +I  C              G  +  L
Sbjct: 84  -----------PEYLRELKHRLLEKQADGRGALNVIFHCMLSQQ--------RGPSAAML 124

Query: 206 IAAYLLVLN-GYKNVYHLEGGLYKWFKE--ELPEVSEE 240
           +   L         ++ L GG  +W     +   V+  
Sbjct: 125 LLRSLDTAELSRCRLWVLRGGFSRWQSVYGDDESVTAG 162

>1c25_A CDC25A; hydrolase, cell cycle phosphatase,dual specificity protein phosphatase, CDK2; 2.30A {Homo sapiens} SCOP: c.46.1.1 Length = 161

 Score = 53.9 bits (129), Expect = 3e-09
 Identities = 22/129 (17%), Positives = 41/129 (31%), Gaps = 27/129 (20%)

Query: 104 QKENNFVILDVRPEAEFKEAHPPGAINVQIYRLIKEWTAWDIARRAAFAFFGIFSGTEEN 163
                FVI+D R   E++  H  GA+N+ +   +                        E+
Sbjct: 40  NLIKEFVIIDCRYPYEYEGGHIKGAVNLHMEEEV------------------------ED 75

Query: 164 PEFLQSVESQLDKDAKIIVACATGGTMKPSQNLPEGQQSRSLIAAYLLVLNGYKNVYHLE 223
               + +     K   ++  C       P       ++ R       L    Y  +Y L+
Sbjct: 76  FLLKKPIVPTDGKRVIVVFHCEFSSERGPRMCRYVRERDRLGNEYPKL---HYPELYVLK 132

Query: 224 GGLYKWFKE 232
           GG  ++F +
Sbjct: 133 GGYKEFFMK 141

>2a2k_A M-phase inducer phosphatase 2; dual specificity, substrate trapping, active site mutant, hydrolase; 1.52A {Homo sapiens} PDB: 2ifv_A 1ymd_A 1ym9_A 1ymk_A 1yml_A 1ys0_A 1cwt_A 2ifd_A Length = 175

 Score = 52.3 bits (125), Expect = 1e-08
 Identities = 28/136 (20%), Positives = 43/136 (31%), Gaps = 27/136 (19%)

Query: 104 QKENNFVILDVRPEAEFKEAHPPGAINVQIYRLIKEWTAWDIARRAAFAFFGIFSGTEEN 163
              + FVI+D R   E++  H   A+N+ + R                         E  
Sbjct: 41  NIVDKFVIVDCRYPYEYEGGHIKTAVNLPLERDA-----------------------ESF 77

Query: 164 PEFLQSVESQLDKDAKIIVACATGGTMKPSQNLPEGQQSRSLIAAYLLVLNGYKNVYHLE 223
                     LDK   +I          P       ++ R++     L    Y  +Y L+
Sbjct: 78  LLKSPIAPCSLDKRVILIFHSEFSSERGPRMCRFIRERDRAVNDYPSL---YYPEMYILK 134

Query: 224 GGLYKWFKEELPEVSE 239
           GG YK F  + P   E
Sbjct: 135 GG-YKEFFPQHPNFCE 149

>4f67_A UPF0176 protein LPG2838; structural genomics, PSI-biology, protein structure initiati northeast structural genomics consortium; 1.79A {Legionella pneumophila subsp} Length = 265

 Score = 49.9 bits (120), Expect = 1e-07
 Identities = 29/144 (20%), Positives = 48/144 (33%), Gaps = 51/144 (35%)

Query: 95  VEAKEALRLQKENNFVILDVRPEAEFKEAHPPGAINVQIYRLIKEWTAWDIARRAAFAFF 154
           +  +E  +  ++ N ++LD R + E++      AIN  I                     
Sbjct: 124 LSPEEWHQFIQDPNVILLDTRNDYEYELGTFKNAINPDIEN------------------- 164

Query: 155 GIFSGTEENPEFLQSVESQLD--KDAKIIVACATGGTMKPSQNLPEGQQSRSLI----AA 208
             F       EF   V+  L   KD KI + C TGG                 I      
Sbjct: 165 --FR------EFPDYVQRNLIDKKDKKIAMFC-TGG-----------------IRCEKTT 198

Query: 209 YLLVLNGYKNVYHLEGGLYKWFKE 232
             +   G+++VY L  G+  + + 
Sbjct: 199 AYMKELGFEHVYQLHDGILNYLES 222

>1qb0_A Protein (M-phase inducer phosphatase 2 (CDC25B)); hydrolase, cell cycle phosphatase, dual specificity protein phosphatase; 1.91A {Homo sapiens} SCOP: c.46.1.1 PDB: 1cwr_A 1cws_A 2uzq_A Length = 211

 Score = 49.3 bits (117), Expect = 2e-07
 Identities = 28/146 (19%), Positives = 41/146 (28%), Gaps = 47/146 (32%)

Query: 104 QKENNFVILDVRPEAEFKEAHPPGAINVQIYRLIKEWTAWDIARRAAFAFFGIFSGTEEN 163
              + FVI+D R   E++  H   A+N+ + R                         E  
Sbjct: 61  NIVDKFVIVDCRYPYEYEGGHIKTAVNLPLERDA-----------------------ESF 97

Query: 164 PEFLQSVESQLDKDAKIIVACATGGTMKPSQNLPEGQQSRSLIAAYLL-----VLN---- 214
                     LDK   +I  C                  R       +      +N    
Sbjct: 98  LLKSPIAPCSLDKRVILIFHCEFSSE-------------RGPRMCRFIRERDRAVNDYPS 144

Query: 215 -GYKNVYHLEGGLYKWFKEELPEVSE 239
             Y  +Y L+GG YK F  + P   E
Sbjct: 145 LYYPEMYILKGG-YKEFFPQHPNFCE 169

>3op3_A M-phase inducer phosphatase 3; structural genomics, structural genomics consortium, SGC, Al alpha sandwich, kinase, cytosol, hydrolase; 2.63A {Homo sapiens} Length = 216

 Score = 47.8 bits (113), Expect = 6e-07
 Identities = 30/158 (18%), Positives = 49/158 (31%), Gaps = 40/158 (25%)

Query: 90  KRVRSVEAKEALRLQKEN---NFVILDVRPEAEFKEAHPPGAINVQIYRLIKEWTAWDIA 146
           K V        L  + +     F ++D R   E+   H  GA+N+     +         
Sbjct: 57  KYVNPETVAALLSGKFQGLIEKFYVIDCRYPYEYLGGHIQGALNLYSQEELFN------- 109

Query: 147 RRAAFAFFGIFSGTEENPEFLQSVESQLDKDAKIIVACATGGTMKPSQNLPEGQQSRSLI 206
                              FL+     LD   +II+      + +       G +    +
Sbjct: 110 ------------------FFLKKPIVPLDTQKRIIIVFHCEFSSE------RGPRMCRCL 145

Query: 207 AAYLLVLN-----GYKNVYHLEGGLYKWFKEELPEVSE 239
                 LN      Y  +Y L+GG Y+ F  E  E+ E
Sbjct: 146 REEDRSLNQYPALYYPELYILKGG-YRDFFPEYMELCE 182

>2vsw_A Dual specificity protein phosphatase 16; hydrolase, dual specificity phosphatase, nucleus, cytoplasm, rhodanese domain, CAsp8; 2.20A {Homo sapiens} PDB: 3tg3_A Length = 153

 Score = 44.8 bits (105), Expect = 3e-06
 Identities = 22/154 (14%), Positives = 46/154 (29%), Gaps = 20/154 (12%)

Query: 87  LLQKRVRSVEAKEALRLQKENNFVILDVRPEAEFKEAHPPGAINVQIYRLIKEWTAWDIA 146
           ++  ++ +      L        +++D RP  E+  +H   AIN+   +L+K     D  
Sbjct: 1   MIGTQIVTERLVALLE-SGTEKVLLIDSRPFVEYNTSHILEAININCSKLMKRRLQQDKV 59

Query: 147 RRAAFAFFGIFSGTEENPEFLQSVESQLDKDAKIIVACATGGTMKPSQNLPEGQQSRSLI 206
                                  V+    +   +    +         +L        L+
Sbjct: 60  LITEL----------IQHSAKHKVDIDCSQKVVVYDQSSQD-----VASLSSDCFLTVLL 104

Query: 207 AAYLLVLNGYKNVYHLEGGLYKWFKEELPEVSEE 240
                    + +V+ L GG +  F    P + E 
Sbjct: 105 GKL---EKSFNSVHLLAGG-FAEFSRCFPGLCEG 134

>3tg1_B Dual specificity protein phosphatase 10; kinase/rhodanese-like domain, docking interaction, transfera hydrolase complex; 2.71A {Homo sapiens} Length = 158

 Score = 44.7 bits (105), Expect = 4e-06
 Identities = 24/131 (18%), Positives = 39/131 (29%), Gaps = 17/131 (12%)

Query: 106 ENNFVILDVRPEAEFKEAHPPGAINVQIYRLIKEWTAWDIARRAAFAFFGIFSGTEENPE 165
               VI+D RP  E+ ++H  GA+++     I         RR      G  +  +    
Sbjct: 32  SQGPVIIDCRPFMEYNKSHIQGAVHINCADKI-------SRRR---LQQGKITVLDLISC 81

Query: 166 FLQSVESQLDKDAKIIVACATGGTMKPSQNLPEGQQSRSLIAAYLLVLNGYKNVYHLEGG 225
                  +     +IIV                  Q   ++   L      K    L+GG
Sbjct: 82  REGKDSFKRIFSKEIIVYDENTNEPSRVMP----SQPLHIVLESL--KREGKEPLVLKGG 135

Query: 226 LYKWFKEELPE 236
               FK+    
Sbjct: 136 -LSSFKQNHEN 145

>2ouc_A Dual specificity protein phosphatase 10; rhodanese fold, hydrolase; 2.20A {Homo sapiens} Length = 142

 Score = 43.9 bits (103), Expect = 6e-06
 Identities = 24/140 (17%), Positives = 43/140 (30%), Gaps = 17/140 (12%)

Query: 97  AKEALRLQKENNFVILDVRPEAEFKEAHPPGAINVQIYRLIKEWTAWDIARRAAFAFFGI 156
            K +         VI+D RP  E+ ++H  GA+++     I         RR      G 
Sbjct: 13  TKCSKSHLPSQGPVIIDCRPFMEYNKSHIQGAVHINCADKI-------SRRR---LQQGK 62

Query: 157 FSGTEENPEFLQSVESQLDKDAKIIVACATGGTMKPSQNLPEGQQSRSLIAAYLLVLNGY 216
            +  +           +     +IIV             +   Q    ++ +   +    
Sbjct: 63  ITVLDLISCREGKDSFKRIFSKEIIVYD---ENTNEPSRVMPSQPLHIVLES---LKREG 116

Query: 217 KNVYHLEGGLYKWFKEELPE 236
           K    L+GG    FK+    
Sbjct: 117 KEPLVLKGG-LSSFKQNHEN 135

>1e0c_A Rhodanese, sulfurtransferase; sulfur metabolism, thiosulfate:cyanide sulfurtransferase; 1.8A {Azotobacter vinelandii} SCOP: c.46.1.2 c.46.1.2 PDB: 1h4k_X 1h4m_X Length = 271

 Score = 44.9 bits (107), Expect = 8e-06
 Identities = 31/151 (20%), Positives = 49/151 (32%), Gaps = 35/151 (23%)

Query: 95  VEAKEALRLQKENNFVILDVRPEAEFKEAHPPGAINVQIYRLIKEWTAWDIARRAAFAFF 154
           +E  +          +++D+   A + E H PGA  V      K                
Sbjct: 11  IEPADLQARLSAPELILVDLTSAARYAEGHIPGARFVD----PKRTQLGQPPAP------ 60

Query: 155 GIFSGTEENPEFLQSVESQL--DKDAKIIVACATGGTMKPSQNLPEGQQSRSLIAAY--- 209
               G +   E L+S+  +L    +A  +V    GG                  A     
Sbjct: 61  ----GLQPPREQLESLFGELGHRPEAVYVVYDDEGGGW----------------AGRFIW 100

Query: 210 LLVLNGYKNVYHLEGGLYKWFKEELPEVSEE 240
           LL + G +  ++L GGL  W  E+ P   E 
Sbjct: 101 LLDVIGQQRYHYLNGGLTAWLAEDRPLSREL 131

>1whb_A KIAA0055; deubiqutinating enzyme, UBPY, structural genomics, riken structural genomics/proteomics initiative, RSGI, hydrolase; NMR {Homo sapiens} SCOP: c.46.1.4 Length = 157

 Score = 42.0 bits (98), Expect = 3e-05
 Identities = 25/171 (14%), Positives = 52/171 (30%), Gaps = 35/171 (20%)

Query: 66  NAATKPAKSPAEEDWKTKRELLLQKRVRSVEAKEALRLQKENNFVILDVRPEAEFKEAHP 125
           ++ +       E+   T +EL              +   K  + +I+D R   +++++  
Sbjct: 2   SSGSSGKCETKEKGAITAKEL-----------YTMMT-DKNISLIIMDARRMQDYQDSCI 49

Query: 126 PGAINVQIYRLIKEWTAWDIARRAAFAFFGIFSGTEENPEFLQSVESQLDKDAKIIVACA 185
             +++V    +    TA  I                  P+  +    +      +++   
Sbjct: 50  LHSLSVPEEAISPGVTASWIEAHL--------------PDDSKDTWKKRGNVEYVVLLDW 95

Query: 186 TGGTMKPSQNLPEGQQSRSLIAAYLLVLNGYKN----VYHLEGGLYKWFKE 232
                  +++L  G   RSL  A L               LEGG   W   
Sbjct: 96  FSS----AKDLQIGTTLRSLKDA-LFKWESKTVLRNEPLVLEGGYENWLLC 141

>1hzm_A Dual specificity protein phosphatase 6; hydrolase; NMR {Homo sapiens} SCOP: c.46.1.1 Length = 154

 Score = 41.7 bits (97), Expect = 4e-05
 Identities = 22/130 (16%), Positives = 45/130 (34%), Gaps = 16/130 (12%)

Query: 107 NNFVILDVRPEAEFKEAHPPGAINVQIYRLIKEWTAWDIARRAAFAFFGIFSGTEENPEF 166
              +++D RP+  ++ +H   AINV I  ++            A     +F+  E+   F
Sbjct: 32  ERLLLMDCRPQELYESSHIESAINVAIPGIMLRRLQKGNLPVRA-----LFTRGEDRDRF 86

Query: 167 LQSVESQLDKDAKIIVACATGGTMKPSQNLPEGQQSRSLIAAYLLVLNGYKNVYHLEGGL 226
            +   +         V      +   ++N         L+       +     ++LEGG 
Sbjct: 87  TRRCGTDT-------VVLYDESSSDWNENTGGESLLGLLLKKL---KDEGCRAFYLEGG- 135

Query: 227 YKWFKEELPE 236
           +  F+ E   
Sbjct: 136 FSKFQAEFSL 145

>2gwf_A Ubiquitin carboxyl-terminal hydrolase 8; protein-protein complex, E3 ligase, protein ubiquitination, hydrolase, protease, UBL conjugation pathway; 2.30A {Homo sapiens} SCOP: c.46.1.4 Length = 157

 Score = 39.3 bits (91), Expect = 3e-04
 Identities = 25/154 (16%), Positives = 53/154 (34%), Gaps = 25/154 (16%)

Query: 85  ELLLQKRVRSVEAKEALRL--QKENNFVILDVRPEAEFKEAHPPGAINVQIYRLIKEWTA 142
             L+ +   ++ AKE   +   K  + +I+D R   +++++    +++V    +    TA
Sbjct: 12  SGLVPRGSGAITAKELYTMMTDKNISLIIMDARRMQDYQDSCILHSLSVPEEAISPGVTA 71

Query: 143 WDIARRAAFAFFGIFSGTEENPEFLQSVESQLDKDAKIIVACATGGTMKPSQNLPEGQQS 202
             I                  P+  +    +      +++          +++L  G   
Sbjct: 72  SWIEAHL--------------PDDSKDTWKKRGNVEYVVLLDWFS----SAKDLQIGTTL 113

Query: 203 RSLIAAYLLVLNGYKNVYH----LEGGLYKWFKE 232
           RSL  A L        + +    LEGG   W   
Sbjct: 114 RSLKDA-LFKWESKTVLRNEPLVLEGGYENWLLC 146

>2wlr_A Putative thiosulfate sulfurtransferase YNJE; rhodanese domains; HET: EPE; 1.45A {Escherichia coli} PDB: 2wlx_A* 3ipo_A* 3ipp_A Length = 423

 Score = 40.5 bits (95), Expect = 3e-04
 Identities = 28/172 (16%), Positives = 50/172 (29%), Gaps = 41/172 (23%)

Query: 71  PAKSPAEEDWKTKRELLLQKRVRSVEAKEALRLQKENNFVILDVRPEAEF---------- 120
           P K  AE D+  K     Q  +   +A+  L      +  ++ +R   EF          
Sbjct: 253 PPKVKAEPDFGVKIPAQPQLMLDMEQARGLL---HRQDASLVSIRSWPEFIGTTSGYSYI 309

Query: 121 -KEAHPPGAINVQIYRLIKEWTAWDIARRAAFAFFGIFSGTEENPEFLQSV--ESQLDKD 177
             +    GA                              GT  + + + ++     +  +
Sbjct: 310 KPKGEIAGARWGHAGSDSTHMED---FHNP--------DGTMRSADDITAMWKAWNIKPE 358

Query: 178 AKIIVACATGGTMKPSQNLPEGQQSRSLIAAYLLVLNGYKNVYHLEGGLYKW 229
            ++   C TG               R+          G+KNV   +GG Y+W
Sbjct: 359 QQVSFYCGTG--------------WRASETFMYARAMGWKNVSVYDGGWYEW 396

>2eg4_A Probable thiosulfate sulfurtransferase; structural genomics, NPPSFA, national Pro protein structural and functional analyses; 1.70A {Thermus thermophilus} PDB: 2eg3_A Length = 230

 Score = 39.5 bits (93), Expect = 4e-04
 Identities = 16/135 (11%), Positives = 35/135 (25%), Gaps = 32/135 (23%)

Query: 103 LQKENNFVILDVRPEAEFKEAHPPGAINVQIYRLIKEWTAWDIARRAAFAFFGIFSGTEE 162
           +    + V++D RP   ++  H PGA ++ +           +   A           + 
Sbjct: 1   MNLPEDAVLVDTRPRPAYEAGHLPGARHLDLSA-----PKLRLREEA---------ELKA 46

Query: 163 NPEFLQSVESQLDKDAKIIVACATGGTMKPSQNLPEGQQSRSLIAAYLL-VLN-GYKNVY 220
               L  +   L   + +++      +                        L  G   V 
Sbjct: 47  LEGGLTELFQTLGLRSPVVLYDEGLTSR----------------LCRTAFFLGLGGLEVQ 90

Query: 221 HLEGGLYKWFKEELP 235
               G   +  E+  
Sbjct: 91  LWTEGWEPYATEKEE 105

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 39.8 bits (92), Expect = 5e-04
 Identities = 48/322 (14%), Positives = 84/322 (26%), Gaps = 109/322 (33%)

Query: 6   SVSQLHSS------LSSLY----PNYRSSPLILA-PKTNQDTTICCLTVRSFTFSRRRLS 54
           ++   +S       L  L     PN+ S     +  K    +    L        RR L 
Sbjct: 188 NLKNCNSPETVLEMLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQAEL--------RRLLK 239

Query: 55  SQSVPRGLII----QNAA--------------TKPAKSPAEEDWKTKRELLLQKRVRSVE 96
           S+     L++    QNA               T+  +        T   + L     ++ 
Sbjct: 240 SKPYENCLLVLLNVQNAKAWNAFNLSCKILLTTRFKQVTDFLSAATTTHISLDHHSMTLT 299

Query: 97  AKEALRLQKENNFV-ILDVRPEAEFKEAHP--PGAINVQIYRLIKEWTA-WD-------- 144
             E   L      +  LD RP+   +E     P  +++ I   I++  A WD        
Sbjct: 300 PDEVKSL-----LLKYLDCRPQDLPREVLTTNPRRLSI-IAESIRDGLATWDNWKHVNCD 353

Query: 145 -----IAR----------RAAFAFFGIF-----------------SGTEENPEFLQSVE- 171
                I            R  F    +F                     +    +  +  
Sbjct: 354 KLTTIIESSLNVLEPAEYRKMFDRLSVFPPSAHIPTILLSLIWFDVIKSDVMVVVNKLHK 413

Query: 172 -SQLDKDAKIIVACATGGTMKPSQNLPEGQQS-RSLIAAY------------LLVLNGYK 217
            S ++K  K          ++    L       RS++  Y               L+ Y 
Sbjct: 414 YSLVEKQPKESTISIPSIYLELKVKLENEYALHRSIVDHYNIPKTFDSDDLIPPYLDQYF 473

Query: 218 N---VYHLE----GGLYKWFKE 232
                +HL+          F+ 
Sbjct: 474 YSHIGHHLKNIEHPERMTLFRM 495

>3aay_A Putative thiosulfate sulfurtransferase; sulfurtranserase, structural genomics, PSI, structure initiative; 1.90A {Mycobacterium tuberculosis} PDB: 3aax_A 3hwi_A Length = 277

 Score = 38.7 bits (91), Expect = 7e-04
 Identities = 24/141 (17%), Positives = 41/141 (29%), Gaps = 42/141 (29%)

Query: 108 NFVILDVR-PEAEFKEAHPPGAINVQIYRLIKEWTAWDIARRAAFA----FFGIFSGTEE 162
             V ++V    + +   H  GAI +     +++    D      F+      GI      
Sbjct: 21  KVVFVEVDEDTSAYDRDHIAGAIKLDWRTDLQDPVKRDFVDAQQFSKLLSERGI------ 74

Query: 163 NPEFLQSVESQLDKDAKIIVACATGGTMKPSQNLPEGQQSRSLIAAY---LLVLNGYKNV 219
                         +  +I+                        AAY      L G++ V
Sbjct: 75  ------------ANEDTVILYGGNNNWF----------------AAYAYWYFKLYGHEKV 106

Query: 220 YHLEGGLYKWFKEELPEVSEE 240
             L+GG  KW  +  P  S+ 
Sbjct: 107 KLLDGGRKKWELDGRPLSSDP 127

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	240
3iwh_A	103	Rhodanese-like domain protein; alpha-beta-alpha sa	99.94
3eme_A	103	Rhodanese-like domain protein; alpha-beta-alpha sa	99.94
3foj_A	100	Uncharacterized protein; protein SSP1007, structur	99.94
3gk5_A	108	Uncharacterized rhodanese-related protein TVG08686	99.93
1gmx_A	108	GLPE protein; transferase, rhodanese, sulfurtransf	99.93
1tq1_A	129	AT5G66040, senescence-associated family protein; C	99.92
2hhg_A	139	Hypothetical protein RPA3614; MCSG, structural gen	99.92
1qxn_A	137	SUD, sulfide dehydrogenase; polysulfide-sulfur tra	99.92
3d1p_A	139	Putative thiosulfate sulfurtransferase YOR285W; at	99.92
3hix_A	106	ALR3790 protein; rhodanese, rhodanese_3, Q8YQN0, Q	99.92
3ilm_A	141	ALR3790 protein; rhodanese-like, NSR437H, NESG, st	99.91
3nhv_A	144	BH2092 protein; alpha-beta protein, structural gen	99.91
3flh_A	124	Uncharacterized protein LP_1913; alpha-beta protei	99.91
1wv9_A	94	Rhodanese homolog TT1651; CDC25, phosphatase, sulf	99.9
2k0z_A	110	Uncharacterized protein HP1203; A/B domain, struct	99.89
1t3k_A	152	Arath CDC25, dual-specificity tyrosine phosphatase	99.89
3i2v_A	127	Adenylyltransferase and sulfurtransferase MOCS3; r	99.88
2fsx_A	148	RV0390, COG0607: rhodanese-related sulfurtransfera	99.88
1vee_A	134	Proline-rich protein family; hypothetical protein,	99.87
3g5j_A	134	Putative ATP/GTP binding protein; N-terminal domai	99.87
1e0c_A	271	Rhodanese, sulfurtransferase; sulfur metabolism, t	99.87
1e0c_A	271	Rhodanese, sulfurtransferase; sulfur metabolism, t	99.87
3hzu_A	318	Thiosulfate sulfurtransferase SSEA; niaid, ssgcid,	99.86
1urh_A	280	3-mercaptopyruvate sulfurtransferase; rhodanese; 2	99.86
2jtq_A	85	Phage shock protein E; solution structure rhodanes	99.85
3aay_A	277	Putative thiosulfate sulfurtransferase; sulfurtran	99.85
1rhs_A	296	Sulfur-substituted rhodanese; transferase, sulfurt	99.84
1uar_A	285	Rhodanese; sulfurtransferase, riken structural gen	99.84
3aay_A	277	Putative thiosulfate sulfurtransferase; sulfurtran	99.84
1rhs_A	296	Sulfur-substituted rhodanese; transferase, sulfurt	99.84
4f67_A	265	UPF0176 protein LPG2838; structural genomics, PSI-	99.84
2ouc_A	142	Dual specificity protein phosphatase 10; rhodanese	99.84
3olh_A	302	MST, 3-mercaptopyruvate sulfurtransferase; structu	99.83
1c25_A	161	CDC25A; hydrolase, cell cycle phosphatase,dual spe	99.83
1uar_A	285	Rhodanese; sulfurtransferase, riken structural gen	99.83
3olh_A	302	MST, 3-mercaptopyruvate sulfurtransferase; structu	99.83
1urh_A	280	3-mercaptopyruvate sulfurtransferase; rhodanese; 2	99.83
3hzu_A	318	Thiosulfate sulfurtransferase SSEA; niaid, ssgcid,	99.83
2j6p_A	152	SB(V)-AS(V) reductase; arsenate reductase, antimon	99.82
1qb0_A	211	Protein (M-phase inducer phosphatase 2 (CDC25B));	99.82
3tp9_A	474	Beta-lactamase and rhodanese domain protein; struc	99.82
2a2k_A	175	M-phase inducer phosphatase 2; dual specificity, s	99.82
2vsw_A	153	Dual specificity protein phosphatase 16; hydrolase	99.82
1yt8_A	539	Thiosulfate sulfurtransferase; rhodanase domains,	99.81
2eg4_A	230	Probable thiosulfate sulfurtransferase; structural	99.81
3f4a_A	169	Uncharacterized protein YGR203W; protein phosphata	99.8
1yt8_A	539	Thiosulfate sulfurtransferase; rhodanase domains,	99.8
2wlr_A	423	Putative thiosulfate sulfurtransferase YNJE; rhoda	99.8
1okg_A	373	Possible 3-mercaptopyruvate sulfurtransferase; rho	99.79
3op3_A	216	M-phase inducer phosphatase 3; structural genomics	99.79
2wlr_A	423	Putative thiosulfate sulfurtransferase YNJE; rhoda	99.78
1hzm_A	154	Dual specificity protein phosphatase 6; hydrolase;	99.77
3tg1_B	158	Dual specificity protein phosphatase 10; kinase/rh	99.77
3ntd_A	565	FAD-dependent pyridine nucleotide-disulphide oxido	99.74
2gwf_A	157	Ubiquitin carboxyl-terminal hydrolase 8; protein-p	99.73
3utn_X	327	Thiosulfate sulfurtransferase TUM1; rhodanese-like	99.73
1whb_A	157	KIAA0055; deubiqutinating enzyme, UBPY, structural	99.73
3ics_A	588	Coenzyme A-disulfide reductase; pyridine nucleotid	99.73
1okg_A	373	Possible 3-mercaptopyruvate sulfurtransferase; rho	99.7
3utn_X	327	Thiosulfate sulfurtransferase TUM1; rhodanese-like	99.69
2eg4_A	230	Probable thiosulfate sulfurtransferase; structural	99.68
3r2u_A	466	Metallo-beta-lactamase family protein; structural	99.66
3tp9_A	474	Beta-lactamase and rhodanese domain protein; struc	99.63
3r2u_A	466	Metallo-beta-lactamase family protein; structural	99.3
2f46_A	156	Hypothetical protein; structural genomics, joint c	97.55
1v8c_A	168	MOAD related protein; riken structural genomics/pr	93.13
4erc_A	150	Dual specificity protein phosphatase 23; alpha bet	92.39
2img_A	151	Dual specificity protein phosphatase 23; DUSP23, V	90.19
1ywf_A	296	Phosphotyrosine protein phosphatase PTPB; four str	86.38
3ezz_A	144	Dual specificity protein phosphatase 4; alpha/beta	81.33
1fpz_A	212	Cyclin-dependent kinase inhibitor 3; alpha-beta sa	81.2
1xri_A	151	AT1G05000; structural genomics, protein structure	80.27

>3iwh_A Rhodanese-like domain protein; alpha-beta-alpha sandwich, structural genomics, C structural genomics of infectious diseases, csgid; 2.00A {Staphylococcus aureus subsp} PDB: 3mzz_A

Probab=99.94  E-value=3.9e-27  Score=179.59  Aligned_cols=101  Identities=27%  Similarity=0.357  Sum_probs=89.6

Q ss_pred             CccccHHHHHHHhcCC-CeEEEEcCChhhhhhCCCCCCeeechhhHHhhhhHHHHHHHhhhhhcccCCCCCCcHHHHHHH
Q 026302           92 VRSVEAKEALRLQKEN-NFVILDVRPEAEFKEAHPPGAINVQIYRLIKEWTAWDIARRAAFAFFGIFSGTEENPEFLQSV  170 (240)
Q Consensus        92 ~~~Is~~el~~~l~~~-~~~lIDvR~~~ey~~ghIpGAinip~~~l~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~  170 (240)
                      ++.|+++|+++.+.++ +++|||||++.||..||||||+|||+.++.+..                              
T Consensus         1 ~k~Is~~el~~~l~~~~~~~liDvR~~~e~~~ghIpgA~~ip~~~l~~~~------------------------------   50 (103)
T 3iwh_A            1 MKSITTDELKNKLLESKPVQIVDVRTDEETAMGYIPNAKLIPMDTIPDNL------------------------------   50 (103)
T ss_dssp             CCEECHHHHHHGGGSSSCCEEEECSCHHHHTTCBCTTCEECCGGGGGGCG------------------------------
T ss_pred             CCCcCHHHHHHHHhCCCCeEEEECCChhHHhcCccCCcccCcccchhhhh------------------------------
Confidence            3579999999987654 689999999999999999999999998875432                              


Q ss_pred             HhcCCCCCcEEEEcCCCCCCCCCCCCCCchhhHHHHHHHHHHHCCCCceEEccccHHHHHhCCCCCcc
Q 026302          171 ESQLDKDAKIIVACATGGTMKPSQNLPEGQQSRSLIAAYLLVLNGYKNVYHLEGGLYKWFKEELPEVS  238 (240)
Q Consensus       171 ~~~i~~~~~IVvyC~~G~~~~~~~~~~~~~~~rs~~aa~~L~~~G~~nV~~l~GG~~~W~~~g~pv~~  238 (240)
                       ..++++++|||||.+|.              ||..++..|++.||+++ +|.||+.+|.++|+|+++
T Consensus        51 -~~l~~~~~ivv~C~~G~--------------rS~~aa~~L~~~G~~~~-~l~GG~~~W~~~g~pves  102 (103)
T 3iwh_A           51 -NSFNKNEIYYIVCAGGV--------------RSAKVVEYLEANGIDAV-NVEGGMHAWGDEGLEIKS  102 (103)
T ss_dssp             -GGCCTTSEEEEECSSSS--------------HHHHHHHHHHTTTCEEE-EETTHHHHHCSSSCBCCC
T ss_pred             -hhhcCCCeEEEECCCCH--------------HHHHHHHHHHHcCCCEE-EecChHHHHHHCCCccee
Confidence             46899999999999998              99999999999999755 789999999999999985

>3foj_A Uncharacterized protein; protein SSP1007, structural genomics, PSI-2, protein structure initiative; 1.60A {Staphylococcus saprophyticus subsp}

Probab=99.94  E-value=1.2e-26  Score=174.69  Aligned_cols=98  Identities=26%  Similarity=0.374  Sum_probs=88.8

Q ss_pred             ccccHHHHHHHhc-CCCeEEEEcCChhhhhhCCCCCCeeechhhHHhhhhHHHHHHHhhhhhcccCCCCCCcHHHHHHHH
Q 026302           93 RSVEAKEALRLQK-ENNFVILDVRPEAEFKEAHPPGAINVQIYRLIKEWTAWDIARRAAFAFFGIFSGTEENPEFLQSVE  171 (240)
Q Consensus        93 ~~Is~~el~~~l~-~~~~~lIDvR~~~ey~~ghIpGAinip~~~l~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~  171 (240)
                      +.|+++|+.++++ .++++|||||++.||..||||||+|+|+.++.+..                               
T Consensus         2 ~~is~~el~~~l~~~~~~~liDvR~~~e~~~ghIpgA~~ip~~~l~~~~-------------------------------   50 (100)
T 3foj_A            2 ESITVTELKEKILDANPVNIVDVRTDQETAMGIIPGAETIPMNSIPDNL-------------------------------   50 (100)
T ss_dssp             CEECHHHHHHGGGSSSCCEEEECSCHHHHTTCBCTTCEECCGGGGGGCG-------------------------------
T ss_pred             CccCHHHHHHHHhcCCCcEEEECCCHHHHhcCcCCCCEECCHHHHHHHH-------------------------------
Confidence            4799999999984 55899999999999999999999999998775432                               


Q ss_pred             hcCCCCCcEEEEcCCCCCCCCCCCCCCchhhHHHHHHHHHHHCCCCceEEccccHHHHHhCCCCC
Q 026302          172 SQLDKDAKIIVACATGGTMKPSQNLPEGQQSRSLIAAYLLVLNGYKNVYHLEGGLYKWFKEELPE  236 (240)
Q Consensus       172 ~~i~~~~~IVvyC~~G~~~~~~~~~~~~~~~rs~~aa~~L~~~G~~nV~~l~GG~~~W~~~g~pv  236 (240)
                      ..++++++|||||.+|.              ||..+++.|+++|| +|++|+||+.+|.++|+||
T Consensus        51 ~~l~~~~~ivvyC~~g~--------------rs~~a~~~L~~~G~-~v~~l~GG~~~W~~~g~pv  100 (100)
T 3foj_A           51 NYFNDNETYYIICKAGG--------------RSAQVVQYLEQNGV-NAVNVEGGMDEFGDEGLEH  100 (100)
T ss_dssp             GGSCTTSEEEEECSSSH--------------HHHHHHHHHHTTTC-EEEEETTHHHHHCSSSCBC
T ss_pred             HhCCCCCcEEEEcCCCc--------------hHHHHHHHHHHCCC-CEEEecccHHHHHHcCCCC
Confidence            45789999999999997              99999999999999 8999999999999999986

>3gk5_A Uncharacterized rhodanese-related protein TVG0868615; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 2.40A {Thermoplasma volcanium GSS1}

Probab=99.93  E-value=8e-26  Score=172.94  Aligned_cols=100  Identities=35%  Similarity=0.562  Sum_probs=91.1

Q ss_pred             CccccHHHHHHHhcCCCeEEEEcCChhhhhhCCCCCCeeechhhHHhhhhHHHHHHHhhhhhcccCCCCCCcHHHHHHHH
Q 026302           92 VRSVEAKEALRLQKENNFVILDVRPEAEFKEAHPPGAINVQIYRLIKEWTAWDIARRAAFAFFGIFSGTEENPEFLQSVE  171 (240)
Q Consensus        92 ~~~Is~~el~~~l~~~~~~lIDvR~~~ey~~ghIpGAinip~~~l~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~  171 (240)
                      ++.|+++|+.+++++  ++|||||++.||..||||||+|+|+.++.+..                               
T Consensus         3 ~~~is~~el~~~l~~--~~iiDvR~~~e~~~ghIpgA~~ip~~~l~~~~-------------------------------   49 (108)
T 3gk5_A            3 YRSINAADLYENIKA--YTVLDVREPFELIFGSIANSINIPISELREKW-------------------------------   49 (108)
T ss_dssp             CCEECHHHHHHTTTT--CEEEECSCHHHHTTCBCTTCEECCHHHHHHHG-------------------------------
T ss_pred             ccEeCHHHHHHHHcC--CEEEECCCHHHHhcCcCCCCEEcCHHHHHHHH-------------------------------
Confidence            467999999999876  99999999999999999999999998765432                               


Q ss_pred             hcCCCCCcEEEEcCCCCCCCCCCCCCCchhhHHHHHHHHHHHCCCCceEEccccHHHHHhCCCCCccC
Q 026302          172 SQLDKDAKIIVACATGGTMKPSQNLPEGQQSRSLIAAYLLVLNGYKNVYHLEGGLYKWFKEELPEVSE  239 (240)
Q Consensus       172 ~~i~~~~~IVvyC~~G~~~~~~~~~~~~~~~rs~~aa~~L~~~G~~nV~~l~GG~~~W~~~g~pv~~~  239 (240)
                      ..++++++|||||.+|.              ||..+++.|+++|| +|++|+||+.+|.++|+|++++
T Consensus        50 ~~l~~~~~ivvyC~~G~--------------rs~~aa~~L~~~G~-~v~~l~GG~~~W~~~~~~~~~~  102 (108)
T 3gk5_A           50 KILERDKKYAVICAHGN--------------RSAAAVEFLSQLGL-NIVDVEGGIQSWIEEGYPVVLE  102 (108)
T ss_dssp             GGSCTTSCEEEECSSSH--------------HHHHHHHHHHTTTC-CEEEETTHHHHHHHTTCCCBCC
T ss_pred             HhCCCCCeEEEEcCCCc--------------HHHHHHHHHHHcCC-CEEEEcCcHHHHHHcCCCCCCC
Confidence            45789999999999997              99999999999999 9999999999999999999875

>1gmx_A GLPE protein; transferase, rhodanese, sulfurtransferase, glycerol metabolism; 1.1A {Escherichia coli} SCOP: c.46.1.3 PDB: 1gn0_A

Probab=99.93  E-value=6.2e-26  Score=172.99  Aligned_cols=102  Identities=25%  Similarity=0.432  Sum_probs=91.8

Q ss_pred             CccccHHHHHHHhcCCCeEEEEcCChhhhhhCCCCCCeeechhhHHhhhhHHHHHHHhhhhhcccCCCCCCcHHHHHHHH
Q 026302           92 VRSVEAKEALRLQKENNFVILDVRPEAEFKEAHPPGAINVQIYRLIKEWTAWDIARRAAFAFFGIFSGTEENPEFLQSVE  171 (240)
Q Consensus        92 ~~~Is~~el~~~l~~~~~~lIDvR~~~ey~~ghIpGAinip~~~l~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~  171 (240)
                      +..|+++++.+++++++++|||||++.||..||||||+|||+..+...                           +    
T Consensus         4 ~~~i~~~~l~~~~~~~~~~liDvR~~~e~~~ghIpgA~~ip~~~l~~~---------------------------~----   52 (108)
T 1gmx_A            4 FECINVADAHQKLQEKEAVLVDIRDPQSFAMGHAVQAFHLTNDTLGAF---------------------------M----   52 (108)
T ss_dssp             CEEECHHHHHHHHHTTCCEEEECSCHHHHHHCEETTCEECCHHHHHHH---------------------------H----
T ss_pred             ccccCHHHHHHHHhCCCCEEEEcCCHHHHHhCCCccCEeCCHHHHHHH---------------------------H----
Confidence            568999999999987789999999999999999999999999776432                           1    


Q ss_pred             hcCCCCCcEEEEcCCCCCCCCCCCCCCchhhHHHHHHHHHHHCCCCceEEccccHHHHHhCCCCCccC
Q 026302          172 SQLDKDAKIIVACATGGTMKPSQNLPEGQQSRSLIAAYLLVLNGYKNVYHLEGGLYKWFKEELPEVSE  239 (240)
Q Consensus       172 ~~i~~~~~IVvyC~~G~~~~~~~~~~~~~~~rs~~aa~~L~~~G~~nV~~l~GG~~~W~~~g~pv~~~  239 (240)
                      ..++++++|||||.+|.              ||..+++.|++.||+||++|+||+.+|.+. +|++++
T Consensus        53 ~~l~~~~~ivvyc~~g~--------------rs~~a~~~L~~~G~~~v~~l~GG~~~W~~~-~p~~~~  105 (108)
T 1gmx_A           53 RDNDFDTPVMVMCYHGN--------------SSKGAAQYLLQQGYDVVYSIDGGFEAWQRQ-FPAEVA  105 (108)
T ss_dssp             HHSCTTSCEEEECSSSS--------------HHHHHHHHHHHHTCSSEEEETTHHHHHHHH-CGGGEE
T ss_pred             HhcCCCCCEEEEcCCCc--------------hHHHHHHHHHHcCCceEEEecCCHHHHHHh-CCcccc
Confidence            24789999999999998              999999999999999999999999999999 999865

>1tq1_A AT5G66040, senescence-associated family protein; CESG, structural genomics, protein structure initiative; NMR {Arabidopsis thaliana} SCOP: c.46.1.3

Probab=99.92  E-value=1.1e-25  Score=177.22  Aligned_cols=115  Identities=35%  Similarity=0.529  Sum_probs=96.9

Q ss_pred             hcCccccHHHHHHHhcCCCeEEEEcCChhhhhhCCCCCCeeechhhHHhhhhHHHHHHHhhhhhcccCCCCCCcHHHHHH
Q 026302           90 KRVRSVEAKEALRLQKENNFVILDVRPEAEFKEAHPPGAINVQIYRLIKEWTAWDIARRAAFAFFGIFSGTEENPEFLQS  169 (240)
Q Consensus        90 ~~~~~Is~~el~~~l~~~~~~lIDvR~~~ey~~ghIpGAinip~~~l~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~  169 (240)
                      .....|+++++.++++ ++++|||||++.||..||||||+|||+..+...                   +....++++++
T Consensus        15 ~~~~~is~~e~~~~l~-~~~~lIDvR~~~e~~~ghIpgAinip~~~~~~~-------------------~~~~~~~~~~~   74 (129)
T 1tq1_A           15 RVPSSVSVTVAHDLLL-AGHRYLDVRTPEEFSQGHACGAINVPYMNRGAS-------------------GMSKNTDFLEQ   74 (129)
T ss_dssp             CCCEEEEHHHHHHHHH-HTCCEEEESCHHHHHHCCBTTBEECCSCCCSTT-------------------TCCCTTTHHHH
T ss_pred             CCCcccCHHHHHHHhc-CCCEEEECCCHHHHhcCCCCCcEECcHhhcccc-------------------cccCCHHHHHH
Confidence            4456899999999987 478999999999999999999999998654210                   11123556666


Q ss_pred             HHhcCCCCCcEEEEcCCCCCCCCCCCCCCchhhHHHHHHHHHHHCCCCceEEccccHHHHHhCCCCCcc
Q 026302          170 VESQLDKDAKIIVACATGGTMKPSQNLPEGQQSRSLIAAYLLVLNGYKNVYHLEGGLYKWFKEELPEVS  238 (240)
Q Consensus       170 ~~~~i~~~~~IVvyC~~G~~~~~~~~~~~~~~~rs~~aa~~L~~~G~~nV~~l~GG~~~W~~~g~pv~~  238 (240)
                      +...++++++|||||.+|.              ||..++..|+++||+||++|+||+.+|.++|+|+++
T Consensus        75 ~~~~l~~~~~ivvyC~~G~--------------rs~~aa~~L~~~G~~~v~~l~GG~~~W~~~g~p~~~  129 (129)
T 1tq1_A           75 VSSHFGQSDNIIVGCQSGG--------------RSIKATTDLLHAGFTGVKDIVGGYSAWAKNGLPTKA  129 (129)
T ss_dssp             HTTTCCTTSSEEEEESSCS--------------HHHHHHHHHHHHHCCSEEEEECCHHHHHHHTCCCC-
T ss_pred             HHhhCCCCCeEEEECCCCc--------------HHHHHHHHHHHcCCCCeEEeCCcHHHHHhCCCCCCC
Confidence            6667899999999999998              999999999999999999999999999999999864

>2hhg_A Hypothetical protein RPA3614; MCSG, structural genomics, rohopseudom palustris, PSI-2, protein structure initiative; 1.20A {Rhodopseudomonas palustris}

Probab=99.92  E-value=4e-25  Score=175.14  Aligned_cols=113  Identities=27%  Similarity=0.366  Sum_probs=94.3

Q ss_pred             hcCccccHHHHHHHhc--CCCeEEEEcCChhhhhh-CCCCCCeeechhhHHhhhhHHHHHHHhhhhhcccCCCCCCcHHH
Q 026302           90 KRVRSVEAKEALRLQK--ENNFVILDVRPEAEFKE-AHPPGAINVQIYRLIKEWTAWDIARRAAFAFFGIFSGTEENPEF  166 (240)
Q Consensus        90 ~~~~~Is~~el~~~l~--~~~~~lIDvR~~~ey~~-ghIpGAinip~~~l~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~  166 (240)
                      ..+..|+++|+.++++  .++++|||||++.||.. ||||||+|||+..+.......                   .+. 
T Consensus        19 ~~~~~is~~~l~~~l~~~~~~~~liDvR~~~e~~~~ghIpgA~~ip~~~l~~~~~~~-------------------~~~-   78 (139)
T 2hhg_A           19 SSIETLTTADAIALHKSGASDVVIVDIRDPREIERDGKIPGSFSCTRGMLEFWIDPQ-------------------SPY-   78 (139)
T ss_dssp             TTSEEECHHHHHHHHHTTCTTEEEEECSCHHHHHHHCCCTTCEECCGGGHHHHHCTT-------------------STT-
T ss_pred             HhcCccCHHHHHHHHhccCCCeEEEECCCHHHHHhCCCCCCeEECChHHHHHhcCcc-------------------chh-
Confidence            5678999999999998  56899999999999999 999999999998775432100                   000 


Q ss_pred             HHHHHhcCCCCCcEEEEcCCCCCCCCCCCCCCchhhHHHHHHHHHHHCCCCceEEccccHHHHHhCCCCCccC
Q 026302          167 LQSVESQLDKDAKIIVACATGGTMKPSQNLPEGQQSRSLIAAYLLVLNGYKNVYHLEGGLYKWFKEELPEVSE  239 (240)
Q Consensus       167 ~~~~~~~i~~~~~IVvyC~~G~~~~~~~~~~~~~~~rs~~aa~~L~~~G~~nV~~l~GG~~~W~~~g~pv~~~  239 (240)
                         ....++++++|||||.+|.              ||..+++.|+.+||+||++|+||+.+|.++|+|++++
T Consensus        79 ---~~~~~~~~~~ivvyC~~G~--------------rs~~a~~~L~~~G~~~v~~l~GG~~~W~~~g~p~~~~  134 (139)
T 2hhg_A           79 ---AKPIFQEDKKFVFYCAGGL--------------RSALAAKTAQDMGLKPVAHIEGGFGAWRDAGGPIEAW  134 (139)
T ss_dssp             ---CCGGGGSSSEEEEECSSSH--------------HHHHHHHHHHHHTCCSEEEETTHHHHHHHTTCCCC--
T ss_pred             ---hhccCCCCCeEEEECCCCh--------------HHHHHHHHHHHcCCCCeEEecCCHHHHHHCCCCeecC
Confidence               0124688999999999997              9999999999999999999999999999999999875

>1qxn_A SUD, sulfide dehydrogenase; polysulfide-sulfur transferase, homodimer; NMR {Wolinella succinogenes} SCOP: c.46.1.3

Probab=99.92  E-value=6.4e-25  Score=174.89  Aligned_cols=107  Identities=27%  Similarity=0.481  Sum_probs=95.7

Q ss_pred             hcCccccHHHHHHHhc-CCCeEEEEcCChhhhhh-CC--CCCCeeechhhHHhhhhHHHHHHHhhhhhcccCCCCCCcHH
Q 026302           90 KRVRSVEAKEALRLQK-ENNFVILDVRPEAEFKE-AH--PPGAINVQIYRLIKEWTAWDIARRAAFAFFGIFSGTEENPE  165 (240)
Q Consensus        90 ~~~~~Is~~el~~~l~-~~~~~lIDvR~~~ey~~-gh--IpGAinip~~~l~~~~~~~~~~~~~~~~~~g~~~~~~~~~~  165 (240)
                      ..+..|+++++.++++ +++++|||||++.||.. ||  ||||+|||+..+...                          
T Consensus        20 ~~~~~is~~el~~~l~~~~~~~liDVR~~~E~~~~gh~~IpgAinip~~~l~~~--------------------------   73 (137)
T 1qxn_A           20 ADMVMLSPKDAYKLLQENPDITLIDVRDPDELKAMGKPDVKNYKHMSRGKLEPL--------------------------   73 (137)
T ss_dssp             HSSEEECHHHHHHHHHHCTTSEEEECCCHHHHHHTCEECCSSEEECCTTTSHHH--------------------------
T ss_pred             ccCcccCHHHHHHHHhcCCCeEEEECCCHHHHHhcCCcCCCCCEEcchHHhhhH--------------------------
Confidence            5678999999999998 66799999999999999 99  999999999876431                          


Q ss_pred             HHHHHHhcCCCCCcEEEEcCCCCCCCCCCCCCCchhhHHHHHHHHHHHCCCCceEEccccHHHHHhCCCCCccC
Q 026302          166 FLQSVESQLDKDAKIIVACATGGTMKPSQNLPEGQQSRSLIAAYLLVLNGYKNVYHLEGGLYKWFKEELPEVSE  239 (240)
Q Consensus       166 ~~~~~~~~i~~~~~IVvyC~~G~~~~~~~~~~~~~~~rs~~aa~~L~~~G~~nV~~l~GG~~~W~~~g~pv~~~  239 (240)
                        .. ...++++++|||||.+|.              ||..+++.|+++||+||++|+||+.+|.++|+|++++
T Consensus        74 --~~-~~~l~~~~~ivvyC~~G~--------------rS~~aa~~L~~~G~~~v~~l~GG~~~W~~~g~p~~~~  130 (137)
T 1qxn_A           74 --LA-KSGLDPEKPVVVFCKTAA--------------RAALAGKTLREYGFKTIYNSEGGMDKWLEEGLPSLDR  130 (137)
T ss_dssp             --HH-HHCCCTTSCEEEECCSSS--------------CHHHHHHHHHHHTCSCEEEESSCHHHHHHTTCCEECC
T ss_pred             --Hh-hccCCCCCeEEEEcCCCc--------------HHHHHHHHHHHcCCcceEEEcCcHHHHHHCCCCcccc
Confidence              01 146899999999999998              9999999999999999999999999999999999875

>3d1p_A Putative thiosulfate sulfurtransferase YOR285W; atomic structure, atomic resolution structure, PSI, MCSG; HET: MSE; 0.98A {Saccharomyces cerevisiae}

Probab=99.92  E-value=8e-25  Score=173.74  Aligned_cols=116  Identities=23%  Similarity=0.385  Sum_probs=96.0

Q ss_pred             hcCccccHHHHHHHhcC--CCeEEEEcCChhhhhhCCCCCCeeechhhHHhhhhHHHHHHHhhhhhcccCCCCCCcHHHH
Q 026302           90 KRVRSVEAKEALRLQKE--NNFVILDVRPEAEFKEAHPPGAINVQIYRLIKEWTAWDIARRAAFAFFGIFSGTEENPEFL  167 (240)
Q Consensus        90 ~~~~~Is~~el~~~l~~--~~~~lIDvR~~~ey~~ghIpGAinip~~~l~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~  167 (240)
                      ..+..|+++++.+++++  ++++|||||++.||..||||||+|||+.++.....                   ....+|.
T Consensus        20 ~~~~~is~~el~~~l~~~~~~~~liDvR~~~e~~~ghIpgAinip~~~l~~~~~-------------------~~~~~~~   80 (139)
T 3d1p_A           20 SNIQSYSFEDMKRIVGKHDPNVVLVDVREPSEYSIVHIPASINVPYRSHPDAFA-------------------LDPLEFE   80 (139)
T ss_dssp             CCCEECCHHHHHHHHHHTCTTEEEEECSCHHHHHHCCCTTCEECCTTTCTTGGG-------------------SCHHHHH
T ss_pred             CCcceecHHHHHHHHhCCCCCeEEEECcCHHHHhCCCCCCcEEcCHHHhhhhcc-------------------CCHHHHH
Confidence            46778999999999873  57999999999999999999999999987743210                   0112333


Q ss_pred             HHHH-hcCCCCCcEEEEcCCCCCCCCCCCCCCchhhHHHHHHHHHHHCCCCceEEccccHHHHHhCCCCCcc
Q 026302          168 QSVE-SQLDKDAKIIVACATGGTMKPSQNLPEGQQSRSLIAAYLLVLNGYKNVYHLEGGLYKWFKEELPEVS  238 (240)
Q Consensus       168 ~~~~-~~i~~~~~IVvyC~~G~~~~~~~~~~~~~~~rs~~aa~~L~~~G~~nV~~l~GG~~~W~~~g~pv~~  238 (240)
                      +.+. ..++++++|||||.+|.              ||..++..|+++||+||++|+||+.+|.+.|+|+.+
T Consensus        81 ~~~~~~~~~~~~~ivvyC~~G~--------------rs~~aa~~L~~~G~~~v~~l~GG~~~W~~~g~p~~~  138 (139)
T 3d1p_A           81 KQIGIPKPDSAKELIFYCASGK--------------RGGEAQKVASSHGYSNTSLYPGSMNDWVSHGGDKLD  138 (139)
T ss_dssp             HHHSSCCCCTTSEEEEECSSSH--------------HHHHHHHHHHTTTCCSEEECTTHHHHHHHTTGGGCC
T ss_pred             HHHhccCCCCCCeEEEECCCCc--------------hHHHHHHHHHHcCCCCeEEeCCcHHHHHHcCCCCCC
Confidence            3332 24688999999999997              999999999999999999999999999999999864

>3hix_A ALR3790 protein; rhodanese, rhodanese_3, Q8YQN0, Q8YQN0_anAsp, NSR437I, NESG, structural genomics, PSI-2, protein structure initiative; 1.92A {Anabaena SP} PDB: 3k9r_A

Probab=99.92  E-value=3.2e-25  Score=168.92  Aligned_cols=97  Identities=30%  Similarity=0.386  Sum_probs=79.5

Q ss_pred             HHHHHhcC--CCeEEEEcCChhhhhhCCCCCCeeechhhHHhhhhHHHHHHHhhhhhcccCCCCCCcHHHHHHHHhcCCC
Q 026302           99 EALRLQKE--NNFVILDVRPEAEFKEAHPPGAINVQIYRLIKEWTAWDIARRAAFAFFGIFSGTEENPEFLQSVESQLDK  176 (240)
Q Consensus        99 el~~~l~~--~~~~lIDvR~~~ey~~ghIpGAinip~~~l~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~i~~  176 (240)
                      ||++++++  ++++|||||++.||..||||||+|||+.++...                              +...+++
T Consensus         2 el~~~l~~~~~~~~liDvR~~~e~~~ghIpgAi~ip~~~l~~~------------------------------~~~~l~~   51 (106)
T 3hix_A            2 VLKSRLEWGEPAFTILDVRDRSTYNDGHIMGAMAMPIEDLVDR------------------------------ASSSLEK   51 (106)
T ss_dssp             -----------CCEEEECSCHHHHHTCEETTCEECCGGGHHHH------------------------------HHHHSCT
T ss_pred             hHHHHHHcCCCCeEEEECCCHHHHhcCcCCCCEeCCHHHHHHH------------------------------HHhcCCC
Confidence            56677763  369999999999999999999999999876532                              1135788


Q ss_pred             CCcEEEEcCCCCCCCCCCCCCCchhhHHHHHHHHHHHCCCCceEEccccHHHHHhCCCCCccC
Q 026302          177 DAKIIVACATGGTMKPSQNLPEGQQSRSLIAAYLLVLNGYKNVYHLEGGLYKWFKEELPEVSE  239 (240)
Q Consensus       177 ~~~IVvyC~~G~~~~~~~~~~~~~~~rs~~aa~~L~~~G~~nV~~l~GG~~~W~~~g~pv~~~  239 (240)
                      +++|||||.+|.              +|..+++.|+.+||+||++|+||+.+|.++|+|+++.
T Consensus        52 ~~~ivvyc~~g~--------------rs~~a~~~L~~~G~~~v~~l~GG~~~W~~~g~~~~~~  100 (106)
T 3hix_A           52 SRDIYVYGAGDE--------------QTSQAVNLLRSAGFEHVSELKGGLAAWKAIGGPTELE  100 (106)
T ss_dssp             TSCEEEECSSHH--------------HHHHHHHHHHHTTCSCEEECTTHHHHHHHTTCCEEEC
T ss_pred             CCeEEEEECCCC--------------hHHHHHHHHHHcCCcCEEEecCCHHHHHHCCCCCCCC
Confidence            999999999987              9999999999999999999999999999999999875

>3ilm_A ALR3790 protein; rhodanese-like, NSR437H, NESG, structural genomics, protein structure initiative, northeast structural genomics consortium; 2.26A {Nostoc SP} PDB: 2kl3_A

Probab=99.91  E-value=7.7e-25  Score=175.44  Aligned_cols=101  Identities=29%  Similarity=0.378  Sum_probs=90.5

Q ss_pred             ccHHHHHHHhcCC--CeEEEEcCChhhhhhCCCCCCeeechhhHHhhhhHHHHHHHhhhhhcccCCCCCCcHHHHHHHHh
Q 026302           95 VEAKEALRLQKEN--NFVILDVRPEAEFKEAHPPGAINVQIYRLIKEWTAWDIARRAAFAFFGIFSGTEENPEFLQSVES  172 (240)
Q Consensus        95 Is~~el~~~l~~~--~~~lIDvR~~~ey~~ghIpGAinip~~~l~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~  172 (240)
                      |+++|+.++++++  +++|||||++.||..||||||+|||+..+...                              +..
T Consensus         2 Is~~el~~~l~~~~~~~~liDvR~~~e~~~ghIpgAi~ip~~~l~~~------------------------------~~~   51 (141)
T 3ilm_A            2 SDAHVLKSRLEWGEPAFTILDVRDRSTYNDGHIMGAMAMPIEDLVDR------------------------------ASS   51 (141)
T ss_dssp             CCHHHHHHHHHHSCSCEEEEECSCHHHHHHCEETTCEECCGGGHHHH------------------------------HHT
T ss_pred             CCHHHHHHHHhcCCCCEEEEECCCHHHHhCCCCCCCEEcCHHHHHHH------------------------------HHh
Confidence            7899999998743  58999999999999999999999999876432                              124


Q ss_pred             cCCCCCcEEEEcCCCCCCCCCCCCCCchhhHHHHHHHHHHHCCCCceEEccccHHHHHhCCCCCccC
Q 026302          173 QLDKDAKIIVACATGGTMKPSQNLPEGQQSRSLIAAYLLVLNGYKNVYHLEGGLYKWFKEELPEVSE  239 (240)
Q Consensus       173 ~i~~~~~IVvyC~~G~~~~~~~~~~~~~~~rs~~aa~~L~~~G~~nV~~l~GG~~~W~~~g~pv~~~  239 (240)
                      .++++++|||||.+|.              ||..+++.|+.+||+||++|+||+.+|.++|+|++++
T Consensus        52 ~l~~~~~ivvyC~~g~--------------rs~~aa~~L~~~G~~~v~~l~GG~~~W~~~g~p~~~~  104 (141)
T 3ilm_A           52 SLEKSRDIYVYGAGDE--------------QTSQAVNLLRSAGFEHVSELKGGLAAWKAIGGPTEGI  104 (141)
T ss_dssp             TSCTTSEEEEECSSHH--------------HHHHHHHHHHHTTCCSEEECTTHHHHHHHTTCCEEEE
T ss_pred             cCCCCCeEEEEECCCh--------------HHHHHHHHHHHcCCCCEEEecCHHHHHHHCCCCcccC
Confidence            6889999999999987              9999999999999999999999999999999999865

>3nhv_A BH2092 protein; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium, NESG; 2.50A {Bacillus halodurans} PDB: 3o3w_A

Probab=99.91  E-value=2.7e-24  Score=172.73  Aligned_cols=104  Identities=24%  Similarity=0.312  Sum_probs=91.9

Q ss_pred             ccccHHHHHHHhcCC--CeEEEEcCChhhhhhCCCCCCeeechhhHHhhhhHHHHHHHhhhhhcccCCCCCCcHHHHHHH
Q 026302           93 RSVEAKEALRLQKEN--NFVILDVRPEAEFKEAHPPGAINVQIYRLIKEWTAWDIARRAAFAFFGIFSGTEENPEFLQSV  170 (240)
Q Consensus        93 ~~Is~~el~~~l~~~--~~~lIDvR~~~ey~~ghIpGAinip~~~l~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~  170 (240)
                      ..|+++|+.++++++  +++|||||++.||..||||||+|||+.++....                              
T Consensus        16 ~~is~~el~~~l~~~~~~~~liDvR~~~ey~~ghIpgAinip~~~l~~~~------------------------------   65 (144)
T 3nhv_A           16 YETDIADLSIDIKKGYEGIIVVDVRDAEAYKECHIPTAISIPGNKINEDT------------------------------   65 (144)
T ss_dssp             TEEEHHHHHHHHHTTCCSEEEEECSCHHHHHHCBCTTCEECCGGGCSTTT------------------------------
T ss_pred             cccCHHHHHHHHHcCCCCEEEEECcCHHHHhcCCCCCCEECCHHHHhHHH------------------------------
Confidence            469999999999875  799999999999999999999999998764311                              


Q ss_pred             HhcCCCCCcEEEEcCCCCCCCCCCCCCCchhhHHHHHHHHHHHCCCCceEEccccHHHHHhCCCCCccC
Q 026302          171 ESQLDKDAKIIVACATGGTMKPSQNLPEGQQSRSLIAAYLLVLNGYKNVYHLEGGLYKWFKEELPEVSE  239 (240)
Q Consensus       171 ~~~i~~~~~IVvyC~~G~~~~~~~~~~~~~~~rs~~aa~~L~~~G~~nV~~l~GG~~~W~~~g~pv~~~  239 (240)
                      ...++++++|||||.+|.|+            +|..+++.|+.+|| +|++|+||+.+|.++|+|++++
T Consensus        66 ~~~l~~~~~ivvyC~~g~~~------------rs~~aa~~L~~~G~-~v~~l~GG~~~W~~~g~pv~~~  121 (144)
T 3nhv_A           66 TKRLSKEKVIITYCWGPACN------------GATKAAAKFAQLGF-RVKELIGGIEYWRKENGEVEGT  121 (144)
T ss_dssp             TTTCCTTSEEEEECSCTTCC------------HHHHHHHHHHHTTC-EEEEEESHHHHHHHTTCCCBSS
T ss_pred             HhhCCCCCeEEEEECCCCcc------------HHHHHHHHHHHCCC-eEEEeCCcHHHHHHCCCCccCC
Confidence            14688999999999999542            99999999999999 6999999999999999999876

>3flh_A Uncharacterized protein LP_1913; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 2.00A {Lactobacillus plantarum} PDB: 3fnj_A 3i3u_A

Probab=99.91  E-value=3.3e-24  Score=167.63  Aligned_cols=103  Identities=26%  Similarity=0.373  Sum_probs=90.6

Q ss_pred             cCccccHHHHHHHhcCC--CeEEEEcCChhhh-hhCCCCCCeeechhhHHhhhhHHHHHHHhhhhhcccCCCCCCcHHHH
Q 026302           91 RVRSVEAKEALRLQKEN--NFVILDVRPEAEF-KEAHPPGAINVQIYRLIKEWTAWDIARRAAFAFFGIFSGTEENPEFL  167 (240)
Q Consensus        91 ~~~~Is~~el~~~l~~~--~~~lIDvR~~~ey-~~ghIpGAinip~~~l~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~  167 (240)
                      ....|+++|+.++++++  +++|||||++.|| ..||||||+|||+.++....                           
T Consensus        13 ~~~~is~~el~~~l~~~~~~~~liDvR~~~e~~~~ghIpgA~nip~~~l~~~~---------------------------   65 (124)
T 3flh_A           13 LSLYIDHHTVLADMQNATGKYVVLDVRNAPAQVKKDQIKGAIAMPAKDLATRI---------------------------   65 (124)
T ss_dssp             HTTEECHHHHHHHHHHTCCCEEEEECCCSCHHHHCCEETTCEECCHHHHHHHG---------------------------
T ss_pred             ccceecHHHHHHHHHcCCCCEEEEECCCHHHHHhcCcCCCCEECCHHHHHHHH---------------------------
Confidence            34579999999998764  4999999999998 99999999999998765321                           


Q ss_pred             HHHHhcCCCCCcEEEEcCCCCCCCCCCCCCCchhhH--HHHHHHHHHHCCCCceEEccccHHHHHhCCCCCccC
Q 026302          168 QSVESQLDKDAKIIVACATGGTMKPSQNLPEGQQSR--SLIAAYLLVLNGYKNVYHLEGGLYKWFKEELPEVSE  239 (240)
Q Consensus       168 ~~~~~~i~~~~~IVvyC~~G~~~~~~~~~~~~~~~r--s~~aa~~L~~~G~~nV~~l~GG~~~W~~~g~pv~~~  239 (240)
                          ..++++++|||||.+|.              +  |..+++.|+.+||+ |++|+||+.+|...|+|+.++
T Consensus        66 ----~~l~~~~~ivvyC~~g~--------------r~~s~~a~~~L~~~G~~-v~~l~GG~~~W~~~~~p~~~~  120 (124)
T 3flh_A           66 ----GELDPAKTYVVYDWTGG--------------TTLGKTALLVLLSAGFE-AYELAGALEGWKGMQLPLEHH  120 (124)
T ss_dssp             ----GGSCTTSEEEEECSSSS--------------CSHHHHHHHHHHHHTCE-EEEETTHHHHHHHTTCCEEC-
T ss_pred             ----hcCCCCCeEEEEeCCCC--------------chHHHHHHHHHHHcCCe-EEEeCCcHHHHHHcCCCCCcc
Confidence                46889999999999998              6  89999999999997 999999999999999998765

>1wv9_A Rhodanese homolog TT1651; CDC25, phosphatase, sulfurtransferase, structural genomics, NPPSFA; 2.00A {Thermus thermophilus}

Probab=99.90  E-value=2.3e-24  Score=160.47  Aligned_cols=93  Identities=29%  Similarity=0.414  Sum_probs=78.2

Q ss_pred             ccccHHHHHHHhcCCCeEEEEcCChhhhhhCCCCCCeeechhhHHhhhhHHHHHHHhhhhhcccCCCCCCcHHHHHHHHh
Q 026302           93 RSVEAKEALRLQKENNFVILDVRPEAEFKEAHPPGAINVQIYRLIKEWTAWDIARRAAFAFFGIFSGTEENPEFLQSVES  172 (240)
Q Consensus        93 ~~Is~~el~~~l~~~~~~lIDvR~~~ey~~ghIpGAinip~~~l~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~  172 (240)
                      +.|+++++.+++++ +++|||||++.||..||||||+|+|+.++....                               .
T Consensus         2 ~~is~~~l~~~~~~-~~~liDvR~~~e~~~ghi~gAi~ip~~~l~~~~-------------------------------~   49 (94)
T 1wv9_A            2 RKVRPEELPALLEE-GVLVVDVRPADRRSTPLPFAAEWVPLEKIQKGE-------------------------------H   49 (94)
T ss_dssp             CEECGGGHHHHHHT-TCEEEECCCC--CCSCCSSCCEECCHHHHTTTC-------------------------------C
T ss_pred             CcCCHHHHHHHHHC-CCEEEECCCHHHHhcccCCCCEECCHHHHHHHH-------------------------------H
Confidence            46899999999886 799999999999999999999999998764321                               3


Q ss_pred             cCCCCCcEEEEcCCCCCCCCCCCCCCchhhHHHHHHHHHHHCCCCceEEccccHHHHHhCC
Q 026302          173 QLDKDAKIIVACATGGTMKPSQNLPEGQQSRSLIAAYLLVLNGYKNVYHLEGGLYKWFKEE  233 (240)
Q Consensus       173 ~i~~~~~IVvyC~~G~~~~~~~~~~~~~~~rs~~aa~~L~~~G~~nV~~l~GG~~~W~~~g  233 (240)
                      .+++ ++|||||.+|.              ||..++..|+++||+ |++|+||+.+|.++|
T Consensus        50 ~l~~-~~ivvyC~~g~--------------rs~~a~~~L~~~G~~-v~~l~GG~~~W~~~G   94 (94)
T 1wv9_A           50 GLPR-RPLLLVCEKGL--------------LSQVAALYLEAEGYE-AMSLEGGLQALTQGK   94 (94)
T ss_dssp             CCCS-SCEEEECSSSH--------------HHHHHHHHHHHHTCC-EEEETTGGGCC----
T ss_pred             hCCC-CCEEEEcCCCC--------------hHHHHHHHHHHcCCc-EEEEcccHHHHHhCc
Confidence            5678 99999999997              999999999999999 999999999998875

>2k0z_A Uncharacterized protein HP1203; A/B domain, structural genomics, unknown function, PSI-2, PR structure initiative; NMR {Helicobacter pylori}

Probab=99.89  E-value=3.2e-24  Score=164.35  Aligned_cols=99  Identities=30%  Similarity=0.443  Sum_probs=85.2

Q ss_pred             ccccHHHHHHHhcCCCeEEEEcCChhhhhhCCCCCCeeechhhHHhhhhHHHHHHHhhhhhcccCCCCCCcHHHHHHHHh
Q 026302           93 RSVEAKEALRLQKENNFVILDVRPEAEFKEAHPPGAINVQIYRLIKEWTAWDIARRAAFAFFGIFSGTEENPEFLQSVES  172 (240)
Q Consensus        93 ~~Is~~el~~~l~~~~~~lIDvR~~~ey~~ghIpGAinip~~~l~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~  172 (240)
                      ..|+++|+    ..++++|||||++.||..||||||+|+|+.++....                           ..  .
T Consensus         5 ~~is~~el----~~~~~~liDvR~~~e~~~ghIpgAi~ip~~~l~~~~---------------------------~~--~   51 (110)
T 2k0z_A            5 YAISLEEV----NFNDFIVVDVRELDEYEELHLPNATLISVNDQEKLA---------------------------DF--L   51 (110)
T ss_dssp             TEEETTTC----CGGGSEEEEEECHHHHHHSBCTTEEEEETTCHHHHH---------------------------HH--H
T ss_pred             eeeCHHHh----ccCCeEEEECCCHHHHhcCcCCCCEEcCHHHHHHHH---------------------------Hh--c
Confidence            35777775    344789999999999999999999999998775431                           11  1


Q ss_pred             cCCCCCcEEEEcCCCCCCCCCCCCCCchhhHHHHHHHHHHHCCCCceEEccccHHHHHhCCCCCccC
Q 026302          173 QLDKDAKIIVACATGGTMKPSQNLPEGQQSRSLIAAYLLVLNGYKNVYHLEGGLYKWFKEELPEVSE  239 (240)
Q Consensus       173 ~i~~~~~IVvyC~~G~~~~~~~~~~~~~~~rs~~aa~~L~~~G~~nV~~l~GG~~~W~~~g~pv~~~  239 (240)
                      .++++++|||||.+|.              ||..+++.|+.+||++ ++|+||+.+|.++|+|++++
T Consensus        52 ~~~~~~~ivvyC~~G~--------------rs~~aa~~L~~~G~~~-~~l~GG~~~W~~~g~p~~~~  103 (110)
T 2k0z_A           52 SQHKDKKVLLHCRAGR--------------RALDAAKSMHELGYTP-YYLEGNVYDFEKYGFRMVYD  103 (110)
T ss_dssp             HSCSSSCEEEECSSSH--------------HHHHHHHHHHHTTCCC-EEEESCGGGTTTTTCCCBCC
T ss_pred             ccCCCCEEEEEeCCCc--------------hHHHHHHHHHHCCCCE-EEecCCHHHHHHCCCcEecC
Confidence            4789999999999997              9999999999999999 99999999999999999875

>1t3k_A Arath CDC25, dual-specificity tyrosine phosphatase; cell cycle, phosphorylation, plant, hydrolase; NMR {Arabidopsis thaliana} SCOP: c.46.1.1

Probab=99.89  E-value=8.1e-24  Score=171.38  Aligned_cols=108  Identities=21%  Similarity=0.318  Sum_probs=90.9

Q ss_pred             cCccccHHHHHHHhcCCCeEEEEcCChhhhhhCCCCCCeeechhhHHhhhhHHHHHHHhhhhhcccCCCCCCcHHHHHHH
Q 026302           91 RVRSVEAKEALRLQKENNFVILDVRPEAEFKEAHPPGAINVQIYRLIKEWTAWDIARRAAFAFFGIFSGTEENPEFLQSV  170 (240)
Q Consensus        91 ~~~~Is~~el~~~l~~~~~~lIDvR~~~ey~~ghIpGAinip~~~l~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~  170 (240)
                      .+..|+++|+.+++++++++|||||++.||..||||||+|||+..+.+.                           +.++
T Consensus        26 ~~~~Is~~el~~~l~~~~~~lIDvR~~~ey~~ghIpgAinip~~~l~~~---------------------------~~~l   78 (152)
T 1t3k_A           26 SISYITSTQLLPLHRRPNIAIIDVRDEERNYDGHIAGSLHYASGSFDDK---------------------------ISHL   78 (152)
T ss_dssp             SSEEECTTTTTTCCCCTTEEEEEESCSHHHHSSCCCSSEEECCSSSSTT---------------------------HHHH
T ss_pred             CCceECHHHHHHHhcCCCEEEEECCChhhccCccCCCCEECCHHHHHHH---------------------------HHHH
Confidence            3457899999988877789999999999999999999999999776432                           2233


Q ss_pred             HhcCCCCCcEEEEcC-CCCCCCCCCCCCCchhhHHHHHHHHHH--------HCCCCceEEccccHHHHHhCCCCCccC
Q 026302          171 ESQLDKDAKIIVACA-TGGTMKPSQNLPEGQQSRSLIAAYLLV--------LNGYKNVYHLEGGLYKWFKEELPEVSE  239 (240)
Q Consensus       171 ~~~i~~~~~IVvyC~-~G~~~~~~~~~~~~~~~rs~~aa~~L~--------~~G~~nV~~l~GG~~~W~~~g~pv~~~  239 (240)
                      ...++++++|||||. +|.              |+..++..|.        ..||+||++|+||+.+|.++|+|++++
T Consensus        79 ~~~~~~~~~iVvyC~~~G~--------------rs~~aa~~L~~~l~~~L~~~G~~~V~~L~GG~~~W~~~g~p~~~~  142 (152)
T 1t3k_A           79 VQNVKDKDTLVFHSALSQV--------------RGPTCARRLVNYLDEKKEDTGIKNIMILERGFNGWEASGKPVCRC  142 (152)
T ss_dssp             HHTCCSCCEEEESSSCCSS--------------SHHHHHHHHHHHHHHSSSCCCSSEEEEESSTTHHHHHHSCSSCCC
T ss_pred             HHhcCCCCEEEEEcCCCCc--------------chHHHHHHHHHHHHHHHHhcCCCcEEEEcCCHHHHHHcCCccccC
Confidence            345688999999999 876              8888888774        389999999999999999999999875

>3i2v_A Adenylyltransferase and sulfurtransferase MOCS3; rhodanese, UBA4, structural genomics, ubiquitin biology, structural genomics consortium, SGC; 1.25A {Homo sapiens}

Probab=99.88  E-value=5.6e-23  Score=159.64  Aligned_cols=115  Identities=23%  Similarity=0.239  Sum_probs=87.4

Q ss_pred             cccHHHHHHHhcCC-CeEEEEcCChhhhhhCCCCCCeeechhhHHhhhhHHHHHHHhhhhhcccCCCCCCcHHHHHHHH-
Q 026302           94 SVEAKEALRLQKEN-NFVILDVRPEAEFKEAHPPGAINVQIYRLIKEWTAWDIARRAAFAFFGIFSGTEENPEFLQSVE-  171 (240)
Q Consensus        94 ~Is~~el~~~l~~~-~~~lIDvR~~~ey~~ghIpGAinip~~~l~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~-  171 (240)
                      .|+++|+.++++++ +++|||||++.||..||||||+|||+..+..........                .++.+.... 
T Consensus         2 ~is~~el~~~l~~~~~~~liDvR~~~e~~~ghIpgA~~ip~~~~~~~~~~~~~~----------------~~~~l~~~~~   65 (127)
T 3i2v_A            2 RVSVTDYKRLLDSGAFHLLLDVRPQVEVDICRLPHALHIPLKHLERRDAESLKL----------------LKEAIWEEKQ   65 (127)
T ss_dssp             EECHHHHHHHHHHTCCCEEEECSCHHHHHHCCCTTSEECCHHHHHTTCHHHHHH----------------HHHHHHHHHT
T ss_pred             CCCHHHHHHHHhCCCCeEEEECCCHHHhhheecCCceeCChHHHhhhhhhhHHH----------------HHHHHhhhcc
Confidence            68999999998765 599999999999999999999999998876432110000                011111111 


Q ss_pred             -hcCCCCCcEEEEcCCCCCCCCCCCCCCchhhHHHHHHHHHHHC------CCCceEEccccHHHHHhCCCCCcc
Q 026302          172 -SQLDKDAKIIVACATGGTMKPSQNLPEGQQSRSLIAAYLLVLN------GYKNVYHLEGGLYKWFKEELPEVS  238 (240)
Q Consensus       172 -~~i~~~~~IVvyC~~G~~~~~~~~~~~~~~~rs~~aa~~L~~~------G~~nV~~l~GG~~~W~~~g~pv~~  238 (240)
                       .+++++++|||||.+|.              ||..++..|+++      ||.+|++|+||+.+|.+++.|..+
T Consensus        66 ~~~~~~~~~ivv~C~~G~--------------rs~~a~~~L~~~gg~~~~G~~~v~~l~GG~~~W~~~~~~~~p  125 (127)
T 3i2v_A           66 GTQEGAAVPIYVICKLGN--------------DSQKAVKILQSLSAAQELDPLTVRDVVGGLMAWAAKIDGTFP  125 (127)
T ss_dssp             TC---CCEEEEEECSSSS--------------HHHHHHHHHHHHHHTTSSSCEEEEEETTHHHHHHHHTCTTSC
T ss_pred             cccCCCCCeEEEEcCCCC--------------cHHHHHHHHHHhhccccCCCceEEEecCCHHHHHHhcCCCCC
Confidence             13456779999999998              999999999998      688999999999999998877654

>2fsx_A RV0390, COG0607: rhodanese-related sulfurtransferase; RV0390 BR SAD DATA with FBAR, structural genomics, PSI; 1.80A {Mycobacterium tuberculosis}

Probab=99.88  E-value=3.4e-23  Score=166.41  Aligned_cols=112  Identities=23%  Similarity=0.355  Sum_probs=88.6

Q ss_pred             CccccHHHHHHHhcC-CCeEEEEcCChhhhhh-CCC------CCCeeechhhHHhhhhHHHHHHHhhhhhcccCCCCCCc
Q 026302           92 VRSVEAKEALRLQKE-NNFVILDVRPEAEFKE-AHP------PGAINVQIYRLIKEWTAWDIARRAAFAFFGIFSGTEEN  163 (240)
Q Consensus        92 ~~~Is~~el~~~l~~-~~~~lIDvR~~~ey~~-ghI------pGAinip~~~l~~~~~~~~~~~~~~~~~~g~~~~~~~~  163 (240)
                      +..|+++|+.+++++ ++++|||||++.||.. |||      |||+|||+.+ .+.                     ...
T Consensus         4 ~~~is~~el~~~l~~~~~~~liDVR~~~e~~~~ghi~~~g~~pgAv~ip~~~-~~~---------------------~~~   61 (148)
T 2fsx_A            4 AGDITPLQAWEMLSDNPRAVLVDVRCEAEWRFVGVPDLSSLGREVVYVEWAT-SDG---------------------THN   61 (148)
T ss_dssp             SEEECHHHHHHHHHHCTTCEEEECSCHHHHHHTCEECCGGGTCCCEECCSBC-TTS---------------------CBC
T ss_pred             cccCCHHHHHHHHhcCCCeEEEECCCHHHHHhcCCCccccCCCCcEEeeeec-ccc---------------------ccC
Confidence            347999999999874 5899999999999997 999      9999999976 210                     001


Q ss_pred             HHHHHHHHh-----cCCCCCcEEEEcCCCCCCCCCCCCCCchhhHHHHHHHHHHHCCCCceEEccccH------------
Q 026302          164 PEFLQSVES-----QLDKDAKIIVACATGGTMKPSQNLPEGQQSRSLIAAYLLVLNGYKNVYHLEGGL------------  226 (240)
Q Consensus       164 ~~~~~~~~~-----~i~~~~~IVvyC~~G~~~~~~~~~~~~~~~rs~~aa~~L~~~G~~nV~~l~GG~------------  226 (240)
                      +.|.+++.+     +++++++|||||.+|.              ||..++..|+.+||+||++|+||+            
T Consensus        62 ~~~~~~l~~~l~~~~~~~~~~ivvyC~~G~--------------rS~~aa~~L~~~G~~~v~~l~GG~~~w~~~~g~~~~  127 (148)
T 2fsx_A           62 DNFLAELRDRIPADADQHERPVIFLCRSGN--------------RSIGAAEVATEAGITPAYNVLDGFEGHLDAEGHRGA  127 (148)
T ss_dssp             TTHHHHHHHHCC-------CCEEEECSSSS--------------THHHHHHHHHHTTCCSEEEETTTTTCCCCTTSCCCS
T ss_pred             HHHHHHHHHHHhhccCCCCCEEEEEcCCCh--------------hHHHHHHHHHHcCCcceEEEcCChhhhhhhcccccc
Confidence            223333322     3589999999999998              999999999999999999999999            


Q ss_pred             HHHHhCCCCCccC
Q 026302          227 YKWFKEELPEVSE  239 (240)
Q Consensus       227 ~~W~~~g~pv~~~  239 (240)
                      .+|.++|+|++.+
T Consensus       128 ~~W~~~glp~~~~  140 (148)
T 2fsx_A          128 TGWRAVGLPWRQG  140 (148)
T ss_dssp             SSTTTTTCSEECC
T ss_pred             ccHHHcCCCCCcc
Confidence            7899999999764

>1vee_A Proline-rich protein family; hypothetical protein, structural genomics, rhodanese domain, riken structural genomics/proteomics initiative; NMR {Arabidopsis thaliana} PDB: 2dcq_A

Probab=99.87  E-value=1.3e-22  Score=160.55  Aligned_cols=109  Identities=27%  Similarity=0.457  Sum_probs=90.8

Q ss_pred             CccccHHHHHHHhc-CCCeEEEEcCChhhhhh-CCC------CCCeeechhhHHhhhhHHHHHHHhhhhhcccCCCCCCc
Q 026302           92 VRSVEAKEALRLQK-ENNFVILDVRPEAEFKE-AHP------PGAINVQIYRLIKEWTAWDIARRAAFAFFGIFSGTEEN  163 (240)
Q Consensus        92 ~~~Is~~el~~~l~-~~~~~lIDvR~~~ey~~-ghI------pGAinip~~~l~~~~~~~~~~~~~~~~~~g~~~~~~~~  163 (240)
                      ...|+++++.++++ .++++|||||++.||.. +|+      |||+|||+..+..                         
T Consensus         4 ~~~is~~e~~~~l~~~~~~~liDVR~~~E~~~~~~~~~~g~~~ga~~ip~~~~~~-------------------------   58 (134)
T 1vee_A            4 GSSGSAKNAYTKLGTDDNAQLLDIRATADFRQVGSPNIKGLGKKAVSTVYNGEDK-------------------------   58 (134)
T ss_dssp             SCBCCHHHHHHHHHHCTTEEEEECSCHHHHHHTCEECCTTTSCCCEECCCCGGGH-------------------------
T ss_pred             CCccCHHHHHHHHHhCCCeEEEEcCCHHHHhhcCCCcccccCCceEEeecccccC-------------------------
Confidence            45799999999987 56899999999999986 333      7999999876421                         


Q ss_pred             HHHHHHHHhcC--CCCCcEEEEcCCCCCCCCCCCCCCchhhHHHHHHHHHHHCCCCceEEccccH---HHHHhCCCCCcc
Q 026302          164 PEFLQSVESQL--DKDAKIIVACATGGTMKPSQNLPEGQQSRSLIAAYLLVLNGYKNVYHLEGGL---YKWFKEELPEVS  238 (240)
Q Consensus       164 ~~~~~~~~~~i--~~~~~IVvyC~~G~~~~~~~~~~~~~~~rs~~aa~~L~~~G~~nV~~l~GG~---~~W~~~g~pv~~  238 (240)
                      ++|++++.+.+  +++++|||||.+|.              ||..++..|+++||+||++|.||+   .+|.++|+|+++
T Consensus        59 ~~~~~~l~~~~~~~~~~~ivv~C~sG~--------------RS~~aa~~L~~~G~~~v~~l~GG~~~~~~W~~~g~p~~~  124 (134)
T 1vee_A           59 PGFLKKLSLKFKDPENTTLYILDKFDG--------------NSELVAELVALNGFKSAYAIKDGAEGPRGWLNSSLPWIE  124 (134)
T ss_dssp             HHHHHHHHTTCSCGGGCEEEEECSSST--------------THHHHHHHHHHHTCSEEEECTTTTTSTTSSGGGTCCEEC
T ss_pred             hhHHHHHHHHhCCCCCCEEEEEeCCCC--------------cHHHHHHHHHHcCCcceEEecCCccCCcchhhcCCCCCC
Confidence            23444454433  78999999999998              999999999999999999999999   789999999986


Q ss_pred             C
Q 026302          239 E  239 (240)
Q Consensus       239 ~  239 (240)
                      +
T Consensus       125 ~  125 (134)
T 1vee_A          125 P  125 (134)
T ss_dssp             C
T ss_pred             C
Confidence            5

>3g5j_A Putative ATP/GTP binding protein; N-terminal domain of ATP/GTP binding protein, PSI, MCSG, STR genomics, protein structure initiative; HET: PGE; 1.76A {Clostridium difficile}

Probab=99.87  E-value=2.7e-22  Score=156.75  Aligned_cols=118  Identities=25%  Similarity=0.394  Sum_probs=86.2

Q ss_pred             CccccHHHHHHHhcCCCeEEEEcCChhhhhhCCCCCCeeechhhHHhhhh--------HHHHHHHhhhhhcccCCCCCCc
Q 026302           92 VRSVEAKEALRLQKENNFVILDVRPEAEFKEAHPPGAINVQIYRLIKEWT--------AWDIARRAAFAFFGIFSGTEEN  163 (240)
Q Consensus        92 ~~~Is~~el~~~l~~~~~~lIDvR~~~ey~~ghIpGAinip~~~l~~~~~--------~~~~~~~~~~~~~g~~~~~~~~  163 (240)
                      +..|+++++.+   .++++|||||++.||..||||||+|||+..+.....        ....+...++.+.     .+.+
T Consensus         4 ~~~i~~~el~~---~~~~~iiDvR~~~e~~~ghIpgA~nip~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~   75 (134)
T 3g5j_A            4 MSVIKIEKALK---LDKVIFVDVRTEGEYEEDHILNAINMPLFKNNEHNEVGTIYKMQGKHEAIQKGFDYV-----SYKL   75 (134)
T ss_dssp             -CEECHHHHTT---CTTEEEEECSCHHHHHHCCCTTCEECCSSCHHHHHHHHHHHHHHCHHHHHHHHHHHH-----GGGH
T ss_pred             ccccCHHHHHh---cCCcEEEEcCCHHHHhcCCCCCCEEcCccchhhhhcccceeeecChhHHHhcccccc-----cccH
Confidence            56799998876   558999999999999999999999999976543211        0011111111111     1223


Q ss_pred             HHHHHHHHhcCCCC-CcEEEEc-CCCCCCCCCCCCCCchhhHHHHHHHHHHHCCCCceEEccccHHHHHhCC
Q 026302          164 PEFLQSVESQLDKD-AKIIVAC-ATGGTMKPSQNLPEGQQSRSLIAAYLLVLNGYKNVYHLEGGLYKWFKEE  233 (240)
Q Consensus       164 ~~~~~~~~~~i~~~-~~IVvyC-~~G~~~~~~~~~~~~~~~rs~~aa~~L~~~G~~nV~~l~GG~~~W~~~g  233 (240)
                      +++.+.+ ..++++ ++||||| .+|.              ||..+++.|+.+|| ||++|+||+.+|.+..
T Consensus        76 ~~~~~~~-~~~~~~~~~ivvyC~~~G~--------------rs~~a~~~L~~~G~-~v~~l~GG~~~W~~~~  131 (134)
T 3g5j_A           76 KDIYLQA-AELALNYDNIVIYCARGGM--------------RSGSIVNLLSSLGV-NVYQLEGGYKAYRNFV  131 (134)
T ss_dssp             HHHHHHH-HHHHTTCSEEEEECSSSSH--------------HHHHHHHHHHHTTC-CCEEETTHHHHHHHHH
T ss_pred             HHHHHHH-HHhccCCCeEEEEECCCCh--------------HHHHHHHHHHHcCC-ceEEEeCcHHHHHHHh
Confidence            4555554 346778 9999999 4776              99999999999999 9999999999998753

>1e0c_A Rhodanese, sulfurtransferase; sulfur metabolism, thiosulfate:cyanide sulfurtransferase; 1.8A {Azotobacter vinelandii} SCOP: c.46.1.2 c.46.1.2 PDB: 1h4k_X 1h4m_X

Probab=99.87  E-value=3.4e-22  Score=174.56  Aligned_cols=121  Identities=21%  Similarity=0.261  Sum_probs=97.0

Q ss_pred             ccccHHHHHHHhcCCCeEEEEcCChhhhhhCCCCCCeeechhhHHhhhhHHHHHHHhhhhhcccCCCCCCcHHHHHHHHh
Q 026302           93 RSVEAKEALRLQKENNFVILDVRPEAEFKEAHPPGAINVQIYRLIKEWTAWDIARRAAFAFFGIFSGTEENPEFLQSVES  172 (240)
Q Consensus        93 ~~Is~~el~~~l~~~~~~lIDvR~~~ey~~ghIpGAinip~~~l~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~  172 (240)
                      ..|+++|+.+++++++++|||||++.||..||||||+|+|+..+.....          .+.++++.   ...|.+.+..
T Consensus         9 ~~is~~~l~~~l~~~~~~iiDvR~~~ey~~ghIpgA~~ip~~~l~~~~~----------~~~~~~~~---~~~~~~~~~~   75 (271)
T 1e0c_A            9 LVIEPADLQARLSAPELILVDLTSAARYAEGHIPGARFVDPKRTQLGQP----------PAPGLQPP---REQLESLFGE   75 (271)
T ss_dssp             SEECHHHHHTTTTCTTEEEEECSCHHHHHHCBSTTCEECCGGGGSCCCT----------TCTTSCCC---HHHHHHHHHH
T ss_pred             ceeeHHHHHHhccCCCeEEEEcCCcchhhhCcCCCCEECCHHHhccCCC----------CCCCCCCC---HHHHHHHHHH
Confidence            3799999999998778999999999999999999999999987653210          01122222   2333333322


Q ss_pred             -cCCCCCcEEEEcCCCCCCCCCCCCCCchhhHHHHHHHHHHHCCCCceEEccccHHHHHhCCCCCccC
Q 026302          173 -QLDKDAKIIVACATGGTMKPSQNLPEGQQSRSLIAAYLLVLNGYKNVYHLEGGLYKWFKEELPEVSE  239 (240)
Q Consensus       173 -~i~~~~~IVvyC~~G~~~~~~~~~~~~~~~rs~~aa~~L~~~G~~nV~~l~GG~~~W~~~g~pv~~~  239 (240)
                       +++++++|||||.+|.             .+|.++++.|+.+||++|++|+||+.+|.++|+|++++
T Consensus        76 ~gi~~~~~vvvyc~~g~-------------~~s~~a~~~L~~~G~~~v~~L~GG~~~w~~~g~p~~~~  130 (271)
T 1e0c_A           76 LGHRPEAVYVVYDDEGG-------------GWAGRFIWLLDVIGQQRYHYLNGGLTAWLAEDRPLSRE  130 (271)
T ss_dssp             HTCCTTCEEEEECSSSS-------------HHHHHHHHHHHHTTCCCEEEETTHHHHHHHTTCCCBCC
T ss_pred             cCCCCCCeEEEEcCCCC-------------ccHHHHHHHHHHcCCCCeEEecCCHHHHHHcCCCccCC
Confidence             4899999999999885             38999999999999999999999999999999999875

>1e0c_A Rhodanese, sulfurtransferase; sulfur metabolism, thiosulfate:cyanide sulfurtransferase; 1.8A {Azotobacter vinelandii} SCOP: c.46.1.2 c.46.1.2 PDB: 1h4k_X 1h4m_X

Probab=99.87  E-value=7.1e-22  Score=172.50  Aligned_cols=116  Identities=20%  Similarity=0.284  Sum_probs=95.6

Q ss_pred             ccccHHHHHHHhcCCCeEEEEcCChhhhh--------hCCCCCCeeechhhHHhhhhHHHHHHHhhhhhcccCCCCCCcH
Q 026302           93 RSVEAKEALRLQKENNFVILDVRPEAEFK--------EAHPPGAINVQIYRLIKEWTAWDIARRAAFAFFGIFSGTEENP  164 (240)
Q Consensus        93 ~~Is~~el~~~l~~~~~~lIDvR~~~ey~--------~ghIpGAinip~~~l~~~~~~~~~~~~~~~~~~g~~~~~~~~~  164 (240)
                      ..|+++++.+++++++++|||||++.||.        .||||||+|+|+..+.+..              +.+...+++.
T Consensus       147 ~~i~~~~l~~~l~~~~~~liDvR~~~e~~g~~~~~~~~ghIpgA~~ip~~~~~~~~--------------~~~~~~~~l~  212 (271)
T 1e0c_A          147 PTASRDYLLGRLGAADLAIWDARSPQEYRGEKVLAAKGGHIPGAVNFEWTAAMDPS--------------RALRIRTDIA  212 (271)
T ss_dssp             TBCCHHHHHHHTTCTTEEEEECSCHHHHTTSSCCSSSCSBCTTCEECCGGGGEEGG--------------GTTEECTTHH
T ss_pred             ccccHHHHHHHhcCCCcEEEEcCChhhcCCccCCCCcCCcCCCceeccHHHhCCCC--------------CCCCCHHHHH
Confidence            46899999999988889999999999999        9999999999998875421              0011112233


Q ss_pred             HHHHHHHhcCCCCCcEEEEcCCCCCCCCCCCCCCchhhHHHHHHHHHHHCCCCceEEccccHHHHHhC-CCCCcc
Q 026302          165 EFLQSVESQLDKDAKIIVACATGGTMKPSQNLPEGQQSRSLIAAYLLVLNGYKNVYHLEGGLYKWFKE-ELPEVS  238 (240)
Q Consensus       165 ~~~~~~~~~i~~~~~IVvyC~~G~~~~~~~~~~~~~~~rs~~aa~~L~~~G~~nV~~l~GG~~~W~~~-g~pv~~  238 (240)
                      +.+..+  +++++++|||||.+|.              ||..++..|+.+||+||++|+|||.+|.+. |+|+++
T Consensus       213 ~~~~~~--~~~~~~~ivvyC~~G~--------------rs~~a~~~L~~~G~~~v~~l~GG~~~W~~~~~~pv~~  271 (271)
T 1e0c_A          213 GRLEEL--GITPDKEIVTHCQTHH--------------RSGLTYLIAKALGYPRVKGYAGSWGEWGNHPDTPVEL  271 (271)
T ss_dssp             HHHHHT--TCCTTSEEEEECSSSS--------------HHHHHHHHHHHTTCSCEEECSSHHHHHTTCTTCCCBC
T ss_pred             HHHHHc--CCCCCCCEEEECCchH--------------HHHHHHHHHHHcCCCCceeeCCcHHHHhcCCCCCCcC
Confidence            333322  6899999999999998              999999999999999999999999999998 999974

>3hzu_A Thiosulfate sulfurtransferase SSEA; niaid, ssgcid, infectious disease, transferase structural genomics; 2.10A {Mycobacterium tuberculosis} PDB: 3p3a_A

Probab=99.86  E-value=3.3e-22  Score=179.73  Aligned_cols=119  Identities=16%  Similarity=0.255  Sum_probs=95.3

Q ss_pred             ccccHHHHHHHhcCCCeEEEEcCChhh-hhhCCCCCCeeechhhHHhhhhHHHHHHHhhhhhcccCCCCCCcHHHHHHHH
Q 026302           93 RSVEAKEALRLQKENNFVILDVRPEAE-FKEAHPPGAINVQIYRLIKEWTAWDIARRAAFAFFGIFSGTEENPEFLQSVE  171 (240)
Q Consensus        93 ~~Is~~el~~~l~~~~~~lIDvR~~~e-y~~ghIpGAinip~~~l~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~  171 (240)
                      ..|+++|+.+++++++++|||||++.| |..||||||+|||+.......            ..+.++   ...+|.+.+.
T Consensus        40 ~~is~~~l~~~l~~~~~~iiDvR~~~e~y~~gHIpGAi~ip~~~~~~~~------------~~~~~~---~~~~~~~~l~  104 (318)
T 3hzu_A           40 RLVTADWLSAHMGAPGLAIVESDEDVLLYDVGHIPGAVKIDWHTDLNDP------------RVRDYI---NGEQFAELMD  104 (318)
T ss_dssp             GEECHHHHHHHTTCTTEEEEECCSSTTSGGGCBCTTEEECCHHHHHBCS------------SSSSBC---CHHHHHHHHH
T ss_pred             ceecHHHHHHhccCCCEEEEECCCChhHHhcCcCCCCeEeCchhhhccC------------cccCCC---CHHHHHHHHH
Confidence            469999999999888899999999876 999999999999986433210            011111   1233333332


Q ss_pred             h-cCCCCCcEEEEcCCCCCCCCCCCCCCchhhHHHHHHHHHHHCCCCceEEccccHHHHHhCCCCCccC
Q 026302          172 S-QLDKDAKIIVACATGGTMKPSQNLPEGQQSRSLIAAYLLVLNGYKNVYHLEGGLYKWFKEELPEVSE  239 (240)
Q Consensus       172 ~-~i~~~~~IVvyC~~G~~~~~~~~~~~~~~~rs~~aa~~L~~~G~~nV~~l~GG~~~W~~~g~pv~~~  239 (240)
                      . +++++++|||||.+|.+             +|.++++.|+.+||+||++|+||+.+|.++|+|++++
T Consensus       105 ~lgi~~~~~vVvyc~~g~~-------------~a~~a~~~L~~~G~~~V~~L~GG~~~W~~~g~p~~~~  160 (318)
T 3hzu_A          105 RKGIARDDTVVIYGDKSNW-------------WAAYALWVFTLFGHADVRLLNGGRDLWLAERRETTLD  160 (318)
T ss_dssp             HTTCCTTCEEEEECSGGGH-------------HHHHHHHHHHHTTCSCEEEETTHHHHHHHTTCCCBCC
T ss_pred             HcCCCCCCeEEEECCCCCc-------------cHHHHHHHHHHcCCCceEEccCCHHHHhhcCCCcccC
Confidence            2 48999999999999863             8999999999999999999999999999999999875

>1urh_A 3-mercaptopyruvate sulfurtransferase; rhodanese; 2.8A {Escherichia coli} SCOP: c.46.1.2 c.46.1.2

Probab=99.86  E-value=1.1e-21  Score=172.19  Aligned_cols=120  Identities=22%  Similarity=0.260  Sum_probs=95.8

Q ss_pred             ccccHHHHHHHhcCCCeEEEEcC----------ChhhhhhCCCCCCeeechhhHHhhhhHHHHHHHhhhhhcccCCCCCC
Q 026302           93 RSVEAKEALRLQKENNFVILDVR----------PEAEFKEAHPPGAINVQIYRLIKEWTAWDIARRAAFAFFGIFSGTEE  162 (240)
Q Consensus        93 ~~Is~~el~~~l~~~~~~lIDvR----------~~~ey~~ghIpGAinip~~~l~~~~~~~~~~~~~~~~~~g~~~~~~~  162 (240)
                      ..|+++|+.+++++++++|||||          ++.||..||||||+|+|+..+.....          .+.++++   .
T Consensus         4 ~~is~~~l~~~l~~~~~~iiDvR~~~~~~~~~~~~~e~~~ghIpgAi~ip~~~l~~~~~----------~~~~~~~---~   70 (280)
T 1urh_A            4 WFVGADWLAEHIDDPEIQIIDARMASPGQEDRNVAQEYLNGHIPGAVFFDIEALSDHTS----------PLPHMLP---R   70 (280)
T ss_dssp             CEECHHHHHTTTTCTTEEEEECCCCCSSCTTCCHHHHHHHSBCTTCEECCGGGGSCSSS----------SSSSCCC---C
T ss_pred             ceeeHHHHHHhcCCCCeEEEEeeccCCcccccchhhhhhhCcCCCCEECCHHHhcCCCC----------CCCCCCC---C
Confidence            36999999999987789999999          78899999999999999987643210          0011111   2


Q ss_pred             cHHHHHHHHh-cCCCCCcEEEEcCCCCCCCCCCCCCCchhhH-HHHHHHHHHHCCCCceEEccccHHHHHhCCCCCccC
Q 026302          163 NPEFLQSVES-QLDKDAKIIVACATGGTMKPSQNLPEGQQSR-SLIAAYLLVLNGYKNVYHLEGGLYKWFKEELPEVSE  239 (240)
Q Consensus       163 ~~~~~~~~~~-~i~~~~~IVvyC~~G~~~~~~~~~~~~~~~r-s~~aa~~L~~~G~~nV~~l~GG~~~W~~~g~pv~~~  239 (240)
                      ..+|.+.+.. +++++++|||||.+|.              + |.++++.|+.+||+||++|+||+.+|..+|+|++++
T Consensus        71 ~~~~~~~~~~~gi~~~~~ivvyc~~g~--------------~~a~~a~~~L~~~G~~~v~~l~GG~~~W~~~g~p~~~~  135 (280)
T 1urh_A           71 PETFAVAMRELGVNQDKHLIVYDEGNL--------------FSAPRAWWMLRTFGVEKVSILGGGLAGWQRDDLLLEEG  135 (280)
T ss_dssp             HHHHHHHHHHTTCCTTSEEEEECSSSC--------------SSHHHHHHHHHHTTCSCEEEETTHHHHHHHTTCCCBBS
T ss_pred             HHHHHHHHHHcCCCCCCeEEEECCCCC--------------ccHHHHHHHHHHcCCCCEEEecCCHHHHHHCCCcccCC
Confidence            2333333322 4799999999999987              6 999999999999999999999999999999999875

>2jtq_A Phage shock protein E; solution structure rhodanese, stress response, transferase; NMR {Escherichia coli} PDB: 2jtr_A 2jts_A

Probab=99.85  E-value=7.3e-22  Score=144.11  Aligned_cols=85  Identities=28%  Similarity=0.436  Sum_probs=71.8

Q ss_pred             CeEEEEcCChhhhhhCCCCCCeeechhhHHhhhhHHHHHHHhhhhhcccCCCCCCcHHHHHHHHhcCCCCCcEEEEcCCC
Q 026302          108 NFVILDVRPEAEFKEAHPPGAINVQIYRLIKEWTAWDIARRAAFAFFGIFSGTEENPEFLQSVESQLDKDAKIIVACATG  187 (240)
Q Consensus       108 ~~~lIDvR~~~ey~~ghIpGAinip~~~l~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~i~~~~~IVvyC~~G  187 (240)
                      +++|||||++.||..||||||+|+|+.++...                           +.++  .++++++|||||.+|
T Consensus         1 ~~~liDvR~~~e~~~ghIpgA~~ip~~~l~~~---------------------------~~~l--~~~~~~~ivv~C~~g   51 (85)
T 2jtq_A            1 AEHWIDVRVPEQYQQEHVQGAINIPLKEVKER---------------------------IATA--VPDKNDTVKVYCNAG   51 (85)
T ss_dssp             CEEEEECSCHHHHTTEEETTCEECCHHHHHHH---------------------------HHHH--CCCTTSEEEEEESSS
T ss_pred             CCEEEECCCHHHHHhCCCCCCEEcCHHHHHHH---------------------------HHHh--CCCCCCcEEEEcCCC
Confidence            46899999999999999999999999876432                           2222  468899999999998


Q ss_pred             CCCCCCCCCCCchhhHHHHHHHHHHHCCCCceEEccccHHHHHhCCCCCccC
Q 026302          188 GTMKPSQNLPEGQQSRSLIAAYLLVLNGYKNVYHLEGGLYKWFKEELPEVSE  239 (240)
Q Consensus       188 ~~~~~~~~~~~~~~~rs~~aa~~L~~~G~~nV~~l~GG~~~W~~~g~pv~~~  239 (240)
                      .              ||..++..|+++||++|+++ |||.+|.   .|+++|
T Consensus        52 ~--------------rs~~aa~~L~~~G~~~v~~l-GG~~~w~---~~~~~g   85 (85)
T 2jtq_A           52 R--------------QSGQAKEILSEMGYTHVENA-GGLKDIA---MPKVKG   85 (85)
T ss_dssp             H--------------HHHHHHHHHHHTTCSSEEEE-EETTTCC---SCEEEC
T ss_pred             c--------------hHHHHHHHHHHcCCCCEEec-cCHHHHh---cccccC
Confidence            7              99999999999999999999 9988884   555543

>3aay_A Putative thiosulfate sulfurtransferase; sulfurtranserase, structural genomics, PSI, structure initiative; 1.90A {Mycobacterium tuberculosis} PDB: 3aax_A 3hwi_A

Probab=99.85  E-value=1.1e-21  Score=171.89  Aligned_cols=119  Identities=19%  Similarity=0.241  Sum_probs=93.4

Q ss_pred             cccHHHHHHHhcCCCeEEEEcCC-hhhhhhCCCCCCeeechhhHHhhhhHHHHHHHhhhhhcccCCCCCCcHHHHHHHHh
Q 026302           94 SVEAKEALRLQKENNFVILDVRP-EAEFKEAHPPGAINVQIYRLIKEWTAWDIARRAAFAFFGIFSGTEENPEFLQSVES  172 (240)
Q Consensus        94 ~Is~~el~~~l~~~~~~lIDvR~-~~ey~~ghIpGAinip~~~l~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~  172 (240)
                      .|+++++.+++++++++|||||+ +.||..||||||+|+|+..+....            ..+.+.....+.+.+.++  
T Consensus         7 ~is~~~l~~~l~~~~~~liDvR~~~~ey~~ghIpgA~~ip~~~~~~~~------------~~~~~~~~~~~~~~~~~~--   72 (277)
T 3aay_A            7 LVSADWAESNLHAPKVVFVEVDEDTSAYDRDHIAGAIKLDWRTDLQDP------------VKRDFVDAQQFSKLLSER--   72 (277)
T ss_dssp             EECHHHHHTTTTCTTEEEEEEESSSHHHHHCBSTTCEEEETTTTTBCS------------SSSSBCCHHHHHHHHHHH--
T ss_pred             eEcHHHHHHHhCCCCEEEEEcCCChhhHhhCCCCCcEEecccccccCC------------CCCCCCCHHHHHHHHHHc--
Confidence            69999999999877899999998 899999999999999987643210            011111111122222222  


Q ss_pred             cCCCCCcEEEEcCCCCCCCCCCCCCCchhhHHHHHHHHHHHCCCCceEEccccHHHHHhCCCCCccC
Q 026302          173 QLDKDAKIIVACATGGTMKPSQNLPEGQQSRSLIAAYLLVLNGYKNVYHLEGGLYKWFKEELPEVSE  239 (240)
Q Consensus       173 ~i~~~~~IVvyC~~G~~~~~~~~~~~~~~~rs~~aa~~L~~~G~~nV~~l~GG~~~W~~~g~pv~~~  239 (240)
                      +++++++|||||.+|.             .+|.++++.|+.+||++|++|+||+.+|.++|+|++++
T Consensus        73 gi~~~~~vvvyc~~g~-------------~~s~~a~~~L~~~G~~~v~~l~GG~~~W~~~g~p~~~~  126 (277)
T 3aay_A           73 GIANEDTVILYGGNNN-------------WFAAYAYWYFKLYGHEKVKLLDGGRKKWELDGRPLSSD  126 (277)
T ss_dssp             TCCTTSEEEEECSGGG-------------HHHHHHHHHHHHTTCCSEEEETTHHHHHHHTTCCCBCC
T ss_pred             CCCCCCeEEEECCCCC-------------chHHHHHHHHHHcCCCcEEEecCCHHHHHHcCCccccC
Confidence            5899999999999875             27899999999999999999999999999999999875

>1rhs_A Sulfur-substituted rhodanese; transferase, sulfurtransferase; 1.36A {Bos taurus} SCOP: c.46.1.2 c.46.1.2 PDB: 1boh_A 1boi_A 1orb_A 2ora_A 1dp2_A* 1rhd_A

Probab=99.84  E-value=1.5e-21  Score=173.04  Aligned_cols=116  Identities=19%  Similarity=0.336  Sum_probs=94.5

Q ss_pred             ccccHHHHHHHhcCCCeEEEEcCChhhh------------hhCCCCCCeeechhhHHhhhhHHHHHHHhhhhhcccCCCC
Q 026302           93 RSVEAKEALRLQKENNFVILDVRPEAEF------------KEAHPPGAINVQIYRLIKEWTAWDIARRAAFAFFGIFSGT  160 (240)
Q Consensus        93 ~~Is~~el~~~l~~~~~~lIDvR~~~ey------------~~ghIpGAinip~~~l~~~~~~~~~~~~~~~~~~g~~~~~  160 (240)
                      ..|+++++.+++++++++|||||++.||            ..||||||+|||+.++....              +.+.  
T Consensus       160 ~~i~~~e~~~~~~~~~~~liDvR~~~e~~G~~~~~~~~~~~~ghIpgA~nip~~~l~~~~--------------~~~~--  223 (296)
T 1rhs_A          160 LLKTYEQVLENLESKRFQLVDSRAQGRYLGTQPEPDAVGLDSGHIRGSVNMPFMNFLTED--------------GFEK--  223 (296)
T ss_dssp             GEECHHHHHHHHHHCCSEEEECSCHHHHHTSSCCSSSSSCCCCEETTCEECCGGGGBCTT--------------SCBC--
T ss_pred             eEEcHHHHHHHhcCCCceEEeCCchhhcccccCCcccCCCcCccCCCCEeecHHHhcCCC--------------CcCC--
Confidence            4799999999988778999999999999            89999999999998774310              1111  


Q ss_pred             CCcHHHHHHHHh-cCCCCCcEEEEcCCCCCCCCCCCCCCchhhHHHHHHHHHHHCCCCceEEccccHHHHHh-CCCCCcc
Q 026302          161 EENPEFLQSVES-QLDKDAKIIVACATGGTMKPSQNLPEGQQSRSLIAAYLLVLNGYKNVYHLEGGLYKWFK-EELPEVS  238 (240)
Q Consensus       161 ~~~~~~~~~~~~-~i~~~~~IVvyC~~G~~~~~~~~~~~~~~~rs~~aa~~L~~~G~~nV~~l~GG~~~W~~-~g~pv~~  238 (240)
                       ...++.+.+.. +++++++|||||.+|.              ||..++..|+.+||+||++|+|||.+|.. .|+|+++
T Consensus       224 -~~~~l~~~~~~~~~~~~~~ivv~C~sG~--------------rs~~a~~~L~~~G~~~v~~~~GG~~~W~~~~~~pv~~  288 (296)
T 1rhs_A          224 -SPEELRAMFEAKKVDLTKPLIATCRKGV--------------TACHIALAAYLCGKPDVAIYDGSWFEWFHRAPPETWV  288 (296)
T ss_dssp             -CHHHHHHHHHHTTCCTTSCEEEECSSSS--------------THHHHHHHHHHTTCCCCEEESSHHHHHHHHSCGGGEE
T ss_pred             -CHHHHHHHHHHcCCCCCCCEEEECCcHH--------------HHHHHHHHHHHcCCCCceeeCCcHHHHhcCCCCCccc
Confidence             11222222221 5799999999999998              99999999999999999999999999998 7999987


Q ss_pred             C
Q 026302          239 E  239 (240)
Q Consensus       239 ~  239 (240)
                      +
T Consensus       289 ~  289 (296)
T 1rhs_A          289 S  289 (296)
T ss_dssp             B
T ss_pred             C
Confidence            5

>1uar_A Rhodanese; sulfurtransferase, riken structural genomics/PROT initiative, RSGI, structural genomics, transferase; 1.70A {Thermus thermophilus} SCOP: c.46.1.2 c.46.1.2

Probab=99.84  E-value=1.5e-21  Score=171.67  Aligned_cols=119  Identities=21%  Similarity=0.295  Sum_probs=93.9

Q ss_pred             ccccHHHHHHHhcCCCeEEEEcC-ChhhhhhCCCCCCeeechhhHHhhhhHHHHHHHhhhhhcccCCCCCCcHHHHHHHH
Q 026302           93 RSVEAKEALRLQKENNFVILDVR-PEAEFKEAHPPGAINVQIYRLIKEWTAWDIARRAAFAFFGIFSGTEENPEFLQSVE  171 (240)
Q Consensus        93 ~~Is~~el~~~l~~~~~~lIDvR-~~~ey~~ghIpGAinip~~~l~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~  171 (240)
                      ..|+++++.+++++++++||||| ++.||..||||||+|+|+.......            ..+.++   ...+|.+.+.
T Consensus         8 ~~is~~~l~~~l~~~~~~liDvR~~~~e~~~ghIpgA~~ip~~~~~~~~------------~~~~~~---~~~~~~~~~~   72 (285)
T 1uar_A            8 VLVSTDWVQEHLEDPKVRVLEVDEDILLYDTGHIPGAQKIDWQRDFWDP------------VVRDFI---SEEEFAKLME   72 (285)
T ss_dssp             GEECHHHHHTTTTCTTEEEEEECSSTTHHHHCBCTTCEEECHHHHHBCS------------SSSSBC---CHHHHHHHHH
T ss_pred             ceEcHHHHHHhcCCCCEEEEEcCCCcchhhcCcCCCCEECCchhhccCC------------cccCCC---CHHHHHHHHH
Confidence            36999999999987789999999 6899999999999999997532210            011111   1123333332


Q ss_pred             h-cCCCCCcEEEEcCCCCCCCCCCCCCCchhhHHHHHHHHHHHCCCCceEEccccHHHHHhCCCCCccC
Q 026302          172 S-QLDKDAKIIVACATGGTMKPSQNLPEGQQSRSLIAAYLLVLNGYKNVYHLEGGLYKWFKEELPEVSE  239 (240)
Q Consensus       172 ~-~i~~~~~IVvyC~~G~~~~~~~~~~~~~~~rs~~aa~~L~~~G~~nV~~l~GG~~~W~~~g~pv~~~  239 (240)
                      . +++++++|||||++|.             .+|.++++.|+.+||+||++|+||+.+|..+|+|++++
T Consensus        73 ~~gi~~~~~ivvyc~~g~-------------~~s~~a~~~L~~~G~~~v~~l~GG~~~W~~~g~p~~~~  128 (285)
T 1uar_A           73 RLGISNDTTVVLYGDKNN-------------WWAAYAFWFFKYNGHKDVRLMNGGRQKWVEEGRPLTTE  128 (285)
T ss_dssp             HTTCCTTCEEEEECHHHH-------------HHHHHHHHHHHHTTCSCEEEETTHHHHHHHHTCCCBCC
T ss_pred             HcCCCCCCeEEEECCCCC-------------ccHHHHHHHHHHcCCCCeEEecCCHHHHHHCCCcccCC
Confidence            2 4799999999999885             26899999999999999999999999999999999864

>3aay_A Putative thiosulfate sulfurtransferase; sulfurtranserase, structural genomics, PSI, structure initiative; 1.90A {Mycobacterium tuberculosis} PDB: 3aax_A 3hwi_A

Probab=99.84  E-value=2.9e-21  Score=169.11  Aligned_cols=114  Identities=29%  Similarity=0.367  Sum_probs=91.0

Q ss_pred             cccHHHHHHHhcCCCeEEEEcCChhhhhh----------------CCCCCCeeechhhHHhhhhHHHHHHHhhhhhcccC
Q 026302           94 SVEAKEALRLQKENNFVILDVRPEAEFKE----------------AHPPGAINVQIYRLIKEWTAWDIARRAAFAFFGIF  157 (240)
Q Consensus        94 ~Is~~el~~~l~~~~~~lIDvR~~~ey~~----------------ghIpGAinip~~~l~~~~~~~~~~~~~~~~~~g~~  157 (240)
                      .++++++.+++.+++  |||||++.||..                ||||||+|||+..+....              +.+
T Consensus       145 ~~~~~el~~~~~~~~--liDvR~~~e~~~~~~~~~~~~~~~~~~~ghIpgA~~ip~~~~~~~~--------------~~~  208 (277)
T 3aay_A          145 RAFRDEVLAAINVKN--LIDVRSPDEFSGKILAPAHLPQEQSQRPGHIPGAINVPWSRAANED--------------GTF  208 (277)
T ss_dssp             EECHHHHHHTTTTSE--EEECSCHHHHHTSCCC-----CCCCSCCSBCTTCEECCGGGGBCTT--------------SCB
T ss_pred             hcCHHHHHHhcCCCC--EEEeCChHHeeeeecccccccccccccCCcCCCceecCHHHhcCCC--------------CcC
Confidence            478999999987654  999999999985                999999999998653210              111


Q ss_pred             CCCCCcHHHHHHHHh-cCCCCCcEEEEcCCCCCCCCCCCCCCchhhHHHHHHHHHHH-CCCCceEEccccHHHHHh-CCC
Q 026302          158 SGTEENPEFLQSVES-QLDKDAKIIVACATGGTMKPSQNLPEGQQSRSLIAAYLLVL-NGYKNVYHLEGGLYKWFK-EEL  234 (240)
Q Consensus       158 ~~~~~~~~~~~~~~~-~i~~~~~IVvyC~~G~~~~~~~~~~~~~~~rs~~aa~~L~~-~G~~nV~~l~GG~~~W~~-~g~  234 (240)
                      .   ..+++.+.+.+ +++++++|||||.+|.              ||..+++.|++ +||+||++|+|||.+|.. .|+
T Consensus       209 ~---~~~~l~~~~~~~~~~~~~~iv~yC~~G~--------------rs~~a~~~L~~~~G~~~v~~l~GG~~~W~~~~g~  271 (277)
T 3aay_A          209 K---SDEELAKLYADAGLDNSKETIAYCRIGE--------------RSSHTWFVLRELLGHQNVKNYDGSWTEYGSLVGA  271 (277)
T ss_dssp             C---CHHHHHHHHHHHTCCTTSCEEEECSSHH--------------HHHHHHHHHHTTSCCSCEEEESSHHHHHTTSTTC
T ss_pred             C---CHHHHHHHHHHcCCCCCCCEEEEcCcHH--------------HHHHHHHHHHHHcCCCcceeeCchHHHHhcCCCC
Confidence            1   11223233322 6899999999999997              99999999996 999999999999999999 999


Q ss_pred             CCccCC
Q 026302          235 PEVSEE  240 (240)
Q Consensus       235 pv~~~~  240 (240)
                      |+++++
T Consensus       272 pv~~g~  277 (277)
T 3aay_A          272 PIELGS  277 (277)
T ss_dssp             CCBCCC
T ss_pred             CCccCC
Confidence            999875

>1rhs_A Sulfur-substituted rhodanese; transferase, sulfurtransferase; 1.36A {Bos taurus} SCOP: c.46.1.2 c.46.1.2 PDB: 1boh_A 1boi_A 1orb_A 2ora_A 1dp2_A* 1rhd_A

Probab=99.84  E-value=3.9e-21  Score=170.39  Aligned_cols=120  Identities=23%  Similarity=0.335  Sum_probs=93.8

Q ss_pred             cccHHHHHHHhcC----CCeEEEEcC--------ChhhhhhCCCCCCeeechhhHHhhhhHHHHHHHhhhhhcccCCCCC
Q 026302           94 SVEAKEALRLQKE----NNFVILDVR--------PEAEFKEAHPPGAINVQIYRLIKEWTAWDIARRAAFAFFGIFSGTE  161 (240)
Q Consensus        94 ~Is~~el~~~l~~----~~~~lIDvR--------~~~ey~~ghIpGAinip~~~l~~~~~~~~~~~~~~~~~~g~~~~~~  161 (240)
                      .|+++|+.+++++    ++++|||||        ++.||..||||||+|+|+..+.....          .+.++++   
T Consensus         9 ~is~~~l~~~l~~~~~~~~~~liDvR~~~~~~~~~~~ey~~gHIpGAi~ip~~~l~~~~~----------~~~~~lp---   75 (296)
T 1rhs_A            9 LVSTKWLAESVRAGKVGPGLRVLDASWYSPGTREARKEYLERHVPGASFFDIEECRDKAS----------PYEVMLP---   75 (296)
T ss_dssp             EECHHHHHHHHHTTCCBTTEEEEECCCCCTTSCCHHHHHHHSBCTTCEECCTTTSSCTTS----------SSSSCCC---
T ss_pred             eeeHHHHHHHHhccccCCCeEEEEecccCcCCcchhhhHhhCcCCCCEEeCHHHhcCCCC----------CCCCCCC---
Confidence            7999999999986    589999999        68999999999999999986543210          0011111   


Q ss_pred             CcHHHHHHHHh-cCCCCCcEEEEcCC--CCCCCCCCCCCCchhhHHHHHHHHHHHCCCCceEEccccHHHHHhCCCCCcc
Q 026302          162 ENPEFLQSVES-QLDKDAKIIVACAT--GGTMKPSQNLPEGQQSRSLIAAYLLVLNGYKNVYHLEGGLYKWFKEELPEVS  238 (240)
Q Consensus       162 ~~~~~~~~~~~-~i~~~~~IVvyC~~--G~~~~~~~~~~~~~~~rs~~aa~~L~~~G~~nV~~l~GG~~~W~~~g~pv~~  238 (240)
                      ...+|.+.+.. +++++++|||||.+  |..             .|.++++.|+.+||++|++|+||+.+|.++|+|+++
T Consensus        76 ~~~~~~~~l~~lgi~~~~~vVvyc~~~~g~~-------------~a~~a~~~L~~~G~~~V~~L~GG~~~W~~~g~p~~~  142 (296)
T 1rhs_A           76 SEAGFADYVGSLGISNDTHVVVYDGDDLGSF-------------YAPRVWWMFRVFGHRTVSVLNGGFRNWLKEGHPVTS  142 (296)
T ss_dssp             CHHHHHHHHHHTTCCTTCEEEEECCCSSSCS-------------SHHHHHHHHHHTTCCCEEEETTHHHHHHHTTCCCBC
T ss_pred             CHHHHHHHHHHcCCCCCCeEEEEcCCCCCcc-------------hHHHHHHHHHHcCCCcEEEcCCCHHHHHHcCCcccc
Confidence            22333333322 58999999999998  651             488999999999999999999999999999999987


Q ss_pred             C
Q 026302          239 E  239 (240)
Q Consensus       239 ~  239 (240)
                      +
T Consensus       143 ~  143 (296)
T 1rhs_A          143 E  143 (296)
T ss_dssp             S
T ss_pred             C
Confidence            5

>4f67_A UPF0176 protein LPG2838; structural genomics, PSI-biology, protein structure initiati northeast structural genomics consortium; 1.79A {Legionella pneumophila subsp}

Probab=99.84  E-value=5.9e-21  Score=168.10  Aligned_cols=148  Identities=20%  Similarity=0.262  Sum_probs=114.4

Q ss_pred             cCCCCCCCCceeEeecCcchhhhhccccCCCCcceeeccCCCCCCCCCCchhhHHHHHHHhhhcCccccHHHHHHHhcCC
Q 026302           28 LAPKTNQDTTICCLTVRSFTFSRRRLSSQSVPRGLIIQNAATKPAKSPAEEDWKTKRELLLQKRVRSVEAKEALRLQKEN  107 (240)
Q Consensus        28 ~~~~~~~~~~~~~~~~rs~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~Is~~el~~~l~~~  107 (240)
                      |.|.. -+.+..+....++..++.++....+..|+..    ..|..                .....|+++|+.++++++
T Consensus        78 ~~~~~-~~~k~s~~~~~~F~~l~vk~k~eiV~~g~~~----~dp~~----------------~~~~~Is~~el~~ll~~~  136 (265)
T 4f67_A           78 SRFAD-LHFKETYDNKNPFDKAKVKLRKEIVTMGVQK----VDPSY----------------NAGTYLSPEEWHQFIQDP  136 (265)
T ss_dssp             GGGTT-CCCEEEEESSCCCSSEEEEECSSSSCCCCTT----CCCTT----------------CTTCEECHHHHHHHTTCT
T ss_pred             CCCCC-CceeeccccCCCccccccccccccccCCCCC----cCccc----------------CCCceECHHHHHHHhcCC
Confidence            34543 3334455677789999999999988887631    11111                123479999999999988


Q ss_pred             CeEEEEcCChhhhhhCCCCCCeeechhhHHhhhhHHHHHHHhhhhhcccCCCCCCcHHHHHHHHhcCCCCCcEEEEcCCC
Q 026302          108 NFVILDVRPEAEFKEAHPPGAINVQIYRLIKEWTAWDIARRAAFAFFGIFSGTEENPEFLQSVESQLDKDAKIIVACATG  187 (240)
Q Consensus       108 ~~~lIDvR~~~ey~~ghIpGAinip~~~l~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~i~~~~~IVvyC~~G  187 (240)
                      +++|||||++.||..||||||+|+|+..+.+.                        ++.+... ...+++++||+||.+|
T Consensus       137 ~~vlIDVR~~~Ey~~GHIpGAiniP~~~~~~~------------------------~~~l~~~-l~~~kdk~IVvyC~~G  191 (265)
T 4f67_A          137 NVILLDTRNDYEYELGTFKNAINPDIENFREF------------------------PDYVQRN-LIDKKDKKIAMFCTGG  191 (265)
T ss_dssp             TSEEEECSCHHHHHHEEETTCBCCCCSSGGGH------------------------HHHHHHH-TGGGTTSCEEEECSSS
T ss_pred             CeEEEEeCCchHhhcCcCCCCEeCCHHHHHhh------------------------HHHHHHh-hhhCCCCeEEEEeCCC
Confidence            99999999999999999999999999876432                        1112111 1347899999999999


Q ss_pred             CCCCCCCCCCCchhhHHHHHHHHHHHCCCCceEEccccHHHHHhCCCC
Q 026302          188 GTMKPSQNLPEGQQSRSLIAAYLLVLNGYKNVYHLEGGLYKWFKEELP  235 (240)
Q Consensus       188 ~~~~~~~~~~~~~~~rs~~aa~~L~~~G~~nV~~l~GG~~~W~~~g~p  235 (240)
                      .              ||..++..|+..||+||++|+||+.+|.++..+
T Consensus       192 ~--------------RS~~Aa~~L~~~Gf~nV~~L~GGi~aW~~~~~~  225 (265)
T 4f67_A          192 I--------------RCEKTTAYMKELGFEHVYQLHDGILNYLESIPE  225 (265)
T ss_dssp             H--------------HHHHHHHHHHHHTCSSEEEETTHHHHHHHHSCT
T ss_pred             h--------------HHHHHHHHHHHcCCCCEEEecCHHHHHHHhcCc
Confidence            7              999999999999999999999999999987443

>2ouc_A Dual specificity protein phosphatase 10; rhodanese fold, hydrolase; 2.20A {Homo sapiens}

Probab=99.84  E-value=1.8e-21  Score=153.31  Aligned_cols=125  Identities=18%  Similarity=0.164  Sum_probs=83.3

Q ss_pred             cccHHHHHH--------HhcCCCeEEEEcCChhhhhhCCCCCCeeechhhHHhhhhHHHHHHHhhhhhcccCCCCCCcHH
Q 026302           94 SVEAKEALR--------LQKENNFVILDVRPEAEFKEAHPPGAINVQIYRLIKEWTAWDIARRAAFAFFGIFSGTEENPE  165 (240)
Q Consensus        94 ~Is~~el~~--------~l~~~~~~lIDvR~~~ey~~ghIpGAinip~~~l~~~~~~~~~~~~~~~~~~g~~~~~~~~~~  165 (240)
                      .|+++|+.+        .+++++++|||||++.||..||||||+|+|+..+...+...              .+....++
T Consensus         2 ~Is~~~l~~~l~~~~~~~l~~~~~~iiDvR~~~e~~~ghIpgA~~ip~~~~~~~~~~~--------------~~~~~~~~   67 (142)
T 2ouc_A            2 IIYPNDLAKKMTKCSKSHLPSQGPVIIDCRPFMEYNKSHIQGAVHINCADKISRRRLQ--------------QGKITVLD   67 (142)
T ss_dssp             EECHHHHHHHHHC----------CEEEECSCHHHHHHEEETTCEECCCSSHHHHHHHH--------------TTSSCHHH
T ss_pred             ccCHHHHHHHHHhcccccCCCCCCEEEEeCCHHHhhhhhccCccccCccHHHHHHHhh--------------cCCcchhh
Confidence            589999998        66666899999999999999999999999998764432100              00111222


Q ss_pred             HHHHHHhcCC-----CCCcEEEEcCCCCCCCCCCCCCCchhhHHHHHHHHHHHCCCCceEEccccHHHHHhCCCCCccC
Q 026302          166 FLQSVESQLD-----KDAKIIVACATGGTMKPSQNLPEGQQSRSLIAAYLLVLNGYKNVYHLEGGLYKWFKEELPEVSE  239 (240)
Q Consensus       166 ~~~~~~~~i~-----~~~~IVvyC~~G~~~~~~~~~~~~~~~rs~~aa~~L~~~G~~nV~~l~GG~~~W~~~g~pv~~~  239 (240)
                      ++... ....     ++++|||||.+|.+...     ...+.++..++..|...|| +|++|+||+.+|.++|+|+.++
T Consensus        68 ~~~~~-~~~~~~~~~~~~~ivvyc~~g~~~~~-----~~~~~~~~~~~~~L~~~G~-~v~~l~GG~~~w~~~g~~~~~~  139 (142)
T 2ouc_A           68 LISCR-EGKDSFKRIFSKEIIVYDENTNEPSR-----VMPSQPLHIVLESLKREGK-EPLVLKGGLSSFKQNHENLCDN  139 (142)
T ss_dssp             HHHTT-SCTTHHHHHHHSCEEEECSSCCCGGG-----CCTTSHHHHHHHHHHHTTC-CCEEETTHHHHHTTTCGGGEEE
T ss_pred             hCCCh-hhhHHHhccCCCcEEEEECCCCchhh-----cCcccHHHHHHHHHHHcCC-cEEEEccCHHHHHHHCHHhhcc
Confidence            22110 0011     36899999999972100     0011246778899999999 9999999999999999988654

>3olh_A MST, 3-mercaptopyruvate sulfurtransferase; structural genomics, structural genomics consortium, SGC, RH fold; 2.50A {Homo sapiens}

Probab=99.83  E-value=2.2e-21  Score=173.13  Aligned_cols=114  Identities=18%  Similarity=0.346  Sum_probs=93.9

Q ss_pred             ccccHHHHHHHhcCCCeEEEEcCChhhh-----------hhCCCCCCeeechhhHHhhhhHHHHHHHhhhhhcccCCCCC
Q 026302           93 RSVEAKEALRLQKENNFVILDVRPEAEF-----------KEAHPPGAINVQIYRLIKEWTAWDIARRAAFAFFGIFSGTE  161 (240)
Q Consensus        93 ~~Is~~el~~~l~~~~~~lIDvR~~~ey-----------~~ghIpGAinip~~~l~~~~~~~~~~~~~~~~~~g~~~~~~  161 (240)
                      ..++.+++.+.+++++++|||||++.||           ..||||||+|||+.++.+..              +.+   .
T Consensus       175 ~~i~~~e~~~~~~~~~~~liDvR~~~ef~G~~~~p~~~~~~GhIpGAiniP~~~l~~~~--------------~~~---~  237 (302)
T 3olh_A          175 FIKTYEDIKENLESRRFQVVDSRATGRFRGTEPEPRDGIEPGHIPGTVNIPFTDFLSQE--------------GLE---K  237 (302)
T ss_dssp             GEECHHHHHHHHHHCCSEEEECSCHHHHHTSSCCSSTTCCCCCCTTCEECCGGGGBCSS--------------SCB---C
T ss_pred             ceecHHHHHHhhcCCCcEEEecCCHHHccccccCCCcCCcCccCCCceecCHHHhcCCC--------------Ccc---C
Confidence            4689999999988778999999999999           79999999999998875421              111   1


Q ss_pred             CcHHHHHHHHh-cCCCCCcEEEEcCCCCCCCCCCCCCCchhhHHHHHHHHHHHCCCCceEEccccHHHHHhCCCCCc
Q 026302          162 ENPEFLQSVES-QLDKDAKIIVACATGGTMKPSQNLPEGQQSRSLIAAYLLVLNGYKNVYHLEGGLYKWFKEELPEV  237 (240)
Q Consensus       162 ~~~~~~~~~~~-~i~~~~~IVvyC~~G~~~~~~~~~~~~~~~rs~~aa~~L~~~G~~nV~~l~GG~~~W~~~g~pv~  237 (240)
                      ..+++.+.+.+ +++++++|||||.+|.              ||..++..|+.+||++|++|+|||.+|..+|+|..
T Consensus       238 ~~~~l~~~~~~~~~~~~~~iv~yC~sG~--------------rs~~a~~~L~~~G~~~v~~~~Gg~~~W~~~~~P~~  300 (302)
T 3olh_A          238 SPEEIRHLFQEKKVDLSKPLVATCGSGV--------------TACHVALGAYLCGKPDVPIYDGSWVEWYMRARPED  300 (302)
T ss_dssp             CHHHHHHHHHHTTCCTTSCEEEECSSSS--------------TTHHHHHHHHTTTCCCCCEESSHHHHHHHHHCCCC
T ss_pred             CHHHHHHHHHhcCCCCCCCEEEECCChH--------------HHHHHHHHHHHcCCCCeeEeCCcHHHHhhccCCCC
Confidence            22333333322 6899999999999998              89999999999999999999999999999999863

>1c25_A CDC25A; hydrolase, cell cycle phosphatase,dual specificity protein phosphatase, CDK2; 2.30A {Homo sapiens} SCOP: c.46.1.1

Probab=99.83  E-value=2.6e-21  Score=157.01  Aligned_cols=109  Identities=17%  Similarity=0.314  Sum_probs=88.0

Q ss_pred             cCccccHHHHHHHhcC------CCeEEEEcCChhhhhhCCCCCCeeechhhHHhhhhHHHHHHHhhhhhcccCCCCCCcH
Q 026302           91 RVRSVEAKEALRLQKE------NNFVILDVRPEAEFKEAHPPGAINVQIYRLIKEWTAWDIARRAAFAFFGIFSGTEENP  164 (240)
Q Consensus        91 ~~~~Is~~el~~~l~~------~~~~lIDvR~~~ey~~ghIpGAinip~~~l~~~~~~~~~~~~~~~~~~g~~~~~~~~~  164 (240)
                      .+..|+++++.+++++      ++++|||||++.||..||||||+|||+..+..++.                       
T Consensus        21 ~~~~is~~el~~~l~~~~~~~~~~~~liDvR~~~e~~~ghIpgAinip~~~~~~~~~-----------------------   77 (161)
T 1c25_A           21 DLKYISPEIMASVLNGKFANLIKEFVIIDCRYPYEYEGGHIKGAVNLHMEEEVEDFL-----------------------   77 (161)
T ss_dssp             TSCEECHHHHHHHHTTTTTTTEEEEEEEECSCHHHHHTCEETTCEECCSHHHHHHHT-----------------------
T ss_pred             CcceeCHHHHHHHHhccccccCCCeEEEECCChHHccCCcccCcEeCChhHHHHHHH-----------------------
Confidence            3568999999999986      37899999999999999999999999987754320                       


Q ss_pred             HHHHHHHhcCCCCCcE--EEEcC-CCCCCCCCCCCCCchhhHHHHHHHHHHH----------CCCCceEEccccHHHHHh
Q 026302          165 EFLQSVESQLDKDAKI--IVACA-TGGTMKPSQNLPEGQQSRSLIAAYLLVL----------NGYKNVYHLEGGLYKWFK  231 (240)
Q Consensus       165 ~~~~~~~~~i~~~~~I--VvyC~-~G~~~~~~~~~~~~~~~rs~~aa~~L~~----------~G~~nV~~l~GG~~~W~~  231 (240)
                         .......+++++|  |+||. +|.              ||..++..|++          +||+||++|+||+.+|.+
T Consensus        78 ---~~~~~~~~~~~~ivvv~yC~~sg~--------------rs~~aa~~L~~~~~~~~~l~~~G~~~v~~l~GG~~~W~~  140 (161)
T 1c25_A           78 ---LKKPIVPTDGKRVIVVFHCEFSSE--------------RGPRMCRYVRERDRLGNEYPKLHYPELYVLKGGYKEFFM  140 (161)
T ss_dssp             ---TTSCCCCCTTSEEEEEEECSSSSS--------------HHHHHHHHHHHHHHHTSSTTCCSSCCEEEETTHHHHHHH
T ss_pred             ---hhhhhccCCCCCeEEEEEcCCCCc--------------chHHHHHHHHHHHHhhhhccccCCceEEEEcCCHHHHHH
Confidence               0000012577886  67899 887              99999999986          499999999999999999


Q ss_pred             CCCCCccC
Q 026302          232 EELPEVSE  239 (240)
Q Consensus       232 ~g~pv~~~  239 (240)
                      +|.|+..+
T Consensus       141 ~~~~~~~~  148 (161)
T 1c25_A          141 KCQSYCEP  148 (161)
T ss_dssp             HHGGGEES
T ss_pred             HcccccCC
Confidence            99887653

>1uar_A Rhodanese; sulfurtransferase, riken structural genomics/PROT initiative, RSGI, structural genomics, transferase; 1.70A {Thermus thermophilus} SCOP: c.46.1.2 c.46.1.2

Probab=99.83  E-value=1.3e-20  Score=165.70  Aligned_cols=116  Identities=27%  Similarity=0.418  Sum_probs=93.2

Q ss_pred             ccccHHHHHHHhc---CCCeEEEEcCChhhhh----------------hCCCCCCeeechhhHHhhhhHHHHHHHhhhhh
Q 026302           93 RSVEAKEALRLQK---ENNFVILDVRPEAEFK----------------EAHPPGAINVQIYRLIKEWTAWDIARRAAFAF  153 (240)
Q Consensus        93 ~~Is~~el~~~l~---~~~~~lIDvR~~~ey~----------------~ghIpGAinip~~~l~~~~~~~~~~~~~~~~~  153 (240)
                      ..|+++++.++++   .++..|||||++.||.                .||||||+|||+..+.+..             
T Consensus       146 ~~i~~~el~~~l~~~~~~~~~liDvR~~~e~~g~~~~~~~~~~~~~~~~ghIpgA~~ip~~~~~~~~-------------  212 (285)
T 1uar_A          146 IRAYRDDVLEHIIKVKEGKGALVDVRSPQEYRGELTHMPDYPQEGALRAGHIPGAKNIPWAKAVNPD-------------  212 (285)
T ss_dssp             GEECHHHHHHHHHHHHTTSEEEEECSCHHHHHTCC--------CCCSCCSBCTTCEECCGGGGBCTT-------------
T ss_pred             eEEcHHHHHHHHhhcccCCCcEEEcCCccceeeeccccccccccccccCCcCCCccccCHHHhcCCC-------------
Confidence            3699999999984   2345799999999997                8999999999998764320             


Q ss_pred             cccCCCCCCcHHHHHHHHhc--CCCCCcEEEEcCCCCCCCCCCCCCCchhhHHHHHHHHHH-HCCCCceEEccccHHHHH
Q 026302          154 FGIFSGTEENPEFLQSVESQ--LDKDAKIIVACATGGTMKPSQNLPEGQQSRSLIAAYLLV-LNGYKNVYHLEGGLYKWF  230 (240)
Q Consensus       154 ~g~~~~~~~~~~~~~~~~~~--i~~~~~IVvyC~~G~~~~~~~~~~~~~~~rs~~aa~~L~-~~G~~nV~~l~GG~~~W~  230 (240)
                       +.+    ..++.+++....  ++++++|||||.+|.              ||..+++.|+ .+||+||++|+|||.+|.
T Consensus       213 -~~~----~~~~~l~~~~~~~g~~~~~~ivvyC~~G~--------------rs~~a~~~L~~~~G~~~v~~l~GG~~~W~  273 (285)
T 1uar_A          213 -GTF----KSAEELRALYEPLGITKDKDIVVYCRIAE--------------RSSHSWFVLKYLLGYPHVKNYDGSWTEWG  273 (285)
T ss_dssp             -SCB----CCHHHHHHHHGGGTCCTTSEEEEECSSHH--------------HHHHHHHHHHTTSCCSCEEEESSHHHHHT
T ss_pred             -CcC----CCHHHHHHHHHHcCCCCCCCEEEECCchH--------------HHHHHHHHHHHHcCCCCcceeCchHHHHh
Confidence             111    122333333233  899999999999997              9999999999 999999999999999998


Q ss_pred             -hCCCCCccCC
Q 026302          231 -KEELPEVSEE  240 (240)
Q Consensus       231 -~~g~pv~~~~  240 (240)
                       +.|+|+++++
T Consensus       274 ~~~g~pv~~g~  284 (285)
T 1uar_A          274 NLVGVPIAKGE  284 (285)
T ss_dssp             TSTTCCCBCSC
T ss_pred             cCCCCCcccCC
Confidence             7999999874

>3olh_A MST, 3-mercaptopyruvate sulfurtransferase; structural genomics, structural genomics consortium, SGC, RH fold; 2.50A {Homo sapiens}

Probab=99.83  E-value=5.9e-21  Score=170.31  Aligned_cols=122  Identities=22%  Similarity=0.342  Sum_probs=93.0

Q ss_pred             ccccHHHHHHHhcCC----CeEEEEcC---------ChhhhhhCCCCCCeeechhhHHhhhhHHHHHHHhhhhhcccCCC
Q 026302           93 RSVEAKEALRLQKEN----NFVILDVR---------PEAEFKEAHPPGAINVQIYRLIKEWTAWDIARRAAFAFFGIFSG  159 (240)
Q Consensus        93 ~~Is~~el~~~l~~~----~~~lIDvR---------~~~ey~~ghIpGAinip~~~l~~~~~~~~~~~~~~~~~~g~~~~  159 (240)
                      ..|+++|+.++++++    +++|||||         ++.||..||||||+|||++.+.+...          .+.++++.
T Consensus        22 ~lIs~~~l~~~l~~~~~~~~~~ilDvR~~~~~~~~~~~~ey~~gHIpGAi~i~~~~~~~~~~----------~~~~~lp~   91 (302)
T 3olh_A           22 SMVSAQWVAEALRAPRAGQPLQLLDASWYLPKLGRDARREFEERHIPGAAFFDIDQCSDRTS----------PYDHMLPG   91 (302)
T ss_dssp             CEECHHHHHHHHHCCCSSCCEEEEECCCCCCC--CCHHHHHHHSCCTTCEECCTTTSSCSSC----------SSSSCCCC
T ss_pred             CccCHHHHHHHhcCcCCCCCEEEEEeecCCCccCcccHHHHhhCcCCCCeEeCHHHhcCcCC----------CCCCCCCC
Confidence            369999999999875    89999999         78999999999999999976532210          01122222


Q ss_pred             CCCcHHHHHHHHhcCCCCCcEEEEcCC--CCCCCCCCCCCCchhhHHHHHHHHHHHCCCCceEEccccHHHHHhCCCCCc
Q 026302          160 TEENPEFLQSVESQLDKDAKIIVACAT--GGTMKPSQNLPEGQQSRSLIAAYLLVLNGYKNVYHLEGGLYKWFKEELPEV  237 (240)
Q Consensus       160 ~~~~~~~~~~~~~~i~~~~~IVvyC~~--G~~~~~~~~~~~~~~~rs~~aa~~L~~~G~~nV~~l~GG~~~W~~~g~pv~  237 (240)
                      ...+.+.+.++  +++++++|||||++  |.             .+|.++++.|+.+||++|++|+||+.+|.++|+|++
T Consensus        92 ~~~~~~~~~~l--gi~~~~~VVvyc~~~~g~-------------~~a~ra~~~L~~~G~~~V~~L~GG~~~W~~~g~p~~  156 (302)
T 3olh_A           92 AEHFAEYAGRL--GVGAATHVVIYDASDQGL-------------YSAPRVWWMFRAFGHHAVSLLDGGLRHWLRQNLPLS  156 (302)
T ss_dssp             HHHHHHHHHHT--TCCSSCEEEEECCCTTSC-------------SSHHHHHHHHHHTTCCCEEEETTHHHHHHHSCCC-C
T ss_pred             HHHHHHHHHHc--CCCCCCEEEEEeCCCCCc-------------chHHHHHHHHHHcCCCcEEECCCCHHHHHHcCCCcc
Confidence            12223333333  56999999999975  32             279999999999999999999999999999999998


Q ss_pred             cC
Q 026302          238 SE  239 (240)
Q Consensus       238 ~~  239 (240)
                      ++
T Consensus       157 ~~  158 (302)
T 3olh_A          157 SG  158 (302)
T ss_dssp             CS
T ss_pred             cC
Confidence            75

>1urh_A 3-mercaptopyruvate sulfurtransferase; rhodanese; 2.8A {Escherichia coli} SCOP: c.46.1.2 c.46.1.2

Probab=99.83  E-value=3.9e-21  Score=168.69  Aligned_cols=114  Identities=28%  Similarity=0.425  Sum_probs=84.9

Q ss_pred             ccccHHHHHHHhcCCCeEEEEcCChhhh-----------hhCCCCCCeeechhhHHhhhhHHHHHHHhhhhhcccCCCCC
Q 026302           93 RSVEAKEALRLQKENNFVILDVRPEAEF-----------KEAHPPGAINVQIYRLIKEWTAWDIARRAAFAFFGIFSGTE  161 (240)
Q Consensus        93 ~~Is~~el~~~l~~~~~~lIDvR~~~ey-----------~~ghIpGAinip~~~l~~~~~~~~~~~~~~~~~~g~~~~~~  161 (240)
                      ..|+++++.+++++++++|||||++.||           ..||||||+|||+.++....                   .-
T Consensus       152 ~~i~~~e~~~~~~~~~~~liDvR~~~e~~G~~~~~~~~~~~ghIpgA~nip~~~~~~~~-------------------~~  212 (280)
T 1urh_A          152 AVVKVTDVLLASHENTAQIIDARPAARFNAEVDEPRPGLRRGHIPGALNVPWTELVREG-------------------EL  212 (280)
T ss_dssp             GBCCHHHHHHHHHHTCSEEEECSCHHHHSSCCCC----CCSSSCTTCEECCGGGGBSSS-------------------SB
T ss_pred             cEEcHHHHHHHhcCCCcEEEeCCchhhcccccCCCCCCCcCccCCCceEeeHHHhhcCC-------------------cc
Confidence            4699999999998778999999999999           68999999999998875310                   00


Q ss_pred             CcHHHHHHHHh--cCCCCCcEEEEcCCCCCCCCCCCCCCchhhHHHHHHHHHHHCCCCceEEccccHHHHHh-CCCCCcc
Q 026302          162 ENPEFLQSVES--QLDKDAKIIVACATGGTMKPSQNLPEGQQSRSLIAAYLLVLNGYKNVYHLEGGLYKWFK-EELPEVS  238 (240)
Q Consensus       162 ~~~~~~~~~~~--~i~~~~~IVvyC~~G~~~~~~~~~~~~~~~rs~~aa~~L~~~G~~nV~~l~GG~~~W~~-~g~pv~~  238 (240)
                      ...+.+.++..  +++++++|||||.+|.              ||..++..|+.+||+||++|+|||.+|.. .|+|+++
T Consensus       213 ~~~~~l~~~~~~~~~~~~~~ivv~C~~G~--------------rs~~a~~~L~~~G~~~v~~~~GG~~~W~~~~~~Pv~~  278 (280)
T 1urh_A          213 KTTDELDAIFFGRGVSYDKPIIVSCGSGV--------------TAAVVLLALATLDVPNVKLYDGAWSEWGARADLPVEP  278 (280)
T ss_dssp             CCHHHHHHHHHTTTCCSSSCEEEECCSSS--------------THHHHHHHHHHTTCSSCEEECCSCCC-----------
T ss_pred             CCHHHHHHHHHHcCCCCCCCEEEECChHH--------------HHHHHHHHHHHcCCCCceeeCChHHHHhcCCCCCcee
Confidence            11222322222  5799999999999998              99999999999999999999999999987 5999986


Q ss_pred             C
Q 026302          239 E  239 (240)
Q Consensus       239 ~  239 (240)
                      .
T Consensus       279 ~  279 (280)
T 1urh_A          279 V  279 (280)
T ss_dssp             -
T ss_pred             c
Confidence            3

>3hzu_A Thiosulfate sulfurtransferase SSEA; niaid, ssgcid, infectious disease, transferase structural genomics; 2.10A {Mycobacterium tuberculosis} PDB: 3p3a_A

Probab=99.83  E-value=1.2e-20  Score=169.47  Aligned_cols=113  Identities=23%  Similarity=0.366  Sum_probs=93.9

Q ss_pred             cccHHHHHHHhcCCCeEEEEcCChhhhhh----------------CCCCCCeeechhhHHhhhhHHHHHHHhhhhhcccC
Q 026302           94 SVEAKEALRLQKENNFVILDVRPEAEFKE----------------AHPPGAINVQIYRLIKEWTAWDIARRAAFAFFGIF  157 (240)
Q Consensus        94 ~Is~~el~~~l~~~~~~lIDvR~~~ey~~----------------ghIpGAinip~~~l~~~~~~~~~~~~~~~~~~g~~  157 (240)
                      .|+.+|+.+++++.  +|||||++.||..                ||||||+|||+.++....                 
T Consensus       180 ~i~~~el~~~l~~~--~liDvR~~~e~~~~~~~~~~~~~~~~~~~GhIpGA~niP~~~~~~~~-----------------  240 (318)
T 3hzu_A          180 RAFRDDVLAILGAQ--PLIDVRSPEEYTGKRTHMPDYPEEGALRAGHIPTAVHIPWGKAADES-----------------  240 (318)
T ss_dssp             BCCHHHHHHHTTTS--CEEECSCHHHHHTSCSSCTTSCSCSCSSCSBCTTCEECCGGGGBCTT-----------------
T ss_pred             cccHHHHHHhhcCC--eEEecCCHHHhcccccCccccccccCCcCcCCCCeeecCHHHhcCCC-----------------
Confidence            68999999999874  8999999999998                999999999998764321                 


Q ss_pred             CCCCCcHHHHHHHHhcCCCCCcEEEEcCCCCCCCCCCCCCCchhhHHHHHHHHHHH-CCCCceEEccccHHHHHh-CCCC
Q 026302          158 SGTEENPEFLQSVESQLDKDAKIIVACATGGTMKPSQNLPEGQQSRSLIAAYLLVL-NGYKNVYHLEGGLYKWFK-EELP  235 (240)
Q Consensus       158 ~~~~~~~~~~~~~~~~i~~~~~IVvyC~~G~~~~~~~~~~~~~~~rs~~aa~~L~~-~G~~nV~~l~GG~~~W~~-~g~p  235 (240)
                       +.-..++.+++...+++++++|||||.+|.              ||..++..|++ +||+||++|+|||.+|.. .|+|
T Consensus       241 -g~~~~~~~l~~~~~~l~~~~~ivvyC~sG~--------------rs~~a~~~L~~~~G~~~v~~~~GG~~~W~~~~g~P  305 (318)
T 3hzu_A          241 -GRFRSREELERLYDFINPDDQTVVYCRIGE--------------RSSHTWFVLTHLLGKADVRNYDGSWTEWGNAVRVP  305 (318)
T ss_dssp             -SCBCCHHHHHHHTTTCCTTCCCEEECSSSH--------------HHHHHHHHHHHTSCCSSCEECTTHHHHHTTSTTCC
T ss_pred             -CcCCCHHHHHHHhcCCCCCCcEEEEcCChH--------------HHHHHHHHHHHHcCCCCeeEeCCcHHHHhcCCCCC
Confidence             111123334444467899999999999997              99999999997 999999999999999995 7999


Q ss_pred             CccCC
Q 026302          236 EVSEE  240 (240)
Q Consensus       236 v~~~~  240 (240)
                      +++++
T Consensus       306 v~~g~  310 (318)
T 3hzu_A          306 IVAGE  310 (318)
T ss_dssp             CBCSS
T ss_pred             cccCC
Confidence            99873

>2j6p_A SB(V)-AS(V) reductase; arsenate reductase, antimonate reductase, CDC25 phosphatase, rhodanese, C-MYC epitope, oxidoreductase; HET: EPE; 2.15A {Leishmania major}

Probab=99.82  E-value=1.7e-20  Score=151.60  Aligned_cols=108  Identities=17%  Similarity=0.208  Sum_probs=83.4

Q ss_pred             cCccccHHHHHHHhcCC----CeEEEEcCChhhhhhCCCCCCeeechhhHHhhhhHHHHHHHhhhhhcccCCCCCCcHHH
Q 026302           91 RVRSVEAKEALRLQKEN----NFVILDVRPEAEFKEAHPPGAINVQIYRLIKEWTAWDIARRAAFAFFGIFSGTEENPEF  166 (240)
Q Consensus        91 ~~~~Is~~el~~~l~~~----~~~lIDvR~~~ey~~ghIpGAinip~~~l~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~  166 (240)
                      .+..|+++++.++++++    +++|||||++ ||..||||||+|||+..+....                      .+++
T Consensus         3 ~~~~Is~~el~~~l~~~~~~~~~~lIDvR~~-ey~~gHIpGAinip~~~l~~~~----------------------~~~l   59 (152)
T 2j6p_A            3 NYTYIKPEELVELLDNPDSLVKAAVIDCRDS-DRDCGFIVNSINMPTISCTEEM----------------------YEKL   59 (152)
T ss_dssp             CCEEECHHHHHHHHHSHHHHHTEEEEECCST-TGGGCBCTTCEECCTTTCCHHH----------------------HHHH
T ss_pred             CcCccCHHHHHHHHhCCCCCCCEEEEEcCcH-HhCcCcCCCcEECChhHhhHHH----------------------HHHH
Confidence            35689999999999873    7999999999 9999999999999998764311                      1222


Q ss_pred             HHHHHhcCCCCCcEEEEc-CCCCCCCCCCCCCCchhhHHHHHH----HHHHHCCC--CceEEccccHHHHHhCCCCCc
Q 026302          167 LQSVESQLDKDAKIIVAC-ATGGTMKPSQNLPEGQQSRSLIAA----YLLVLNGY--KNVYHLEGGLYKWFKEELPEV  237 (240)
Q Consensus       167 ~~~~~~~i~~~~~IVvyC-~~G~~~~~~~~~~~~~~~rs~~aa----~~L~~~G~--~nV~~l~GG~~~W~~~g~pv~  237 (240)
                      .+.+..  .....||+|| .+|.              |+..++    ..|+++||  .+|++|+||+.+|..+|.++.
T Consensus        60 ~~~l~~--~~~~~vV~yC~~sg~--------------rs~~aa~~~~~~L~~~G~~~~~v~~L~GG~~~W~~~g~~~~  121 (152)
T 2j6p_A           60 AKTLFE--EKKELAVFHCAQSLV--------------RAPKGANRFALAQKKLGYVLPAVYVLRGGWEAFYHMYGDVR  121 (152)
T ss_dssp             HHHHHH--TTCCEEEEECSSSSS--------------HHHHHHHHHHHHHHHHTCCCSEEEEETTHHHHHHHHHTTTC
T ss_pred             HHHhcc--cCCCEEEEEcCCCCC--------------ccHHHHHHHHHHHHHcCCCCCCEEEEcCcHHHHHHHcCCCC
Confidence            222211  2234577789 6877              888887    77888997  589999999999999988765

>1qb0_A Protein (M-phase inducer phosphatase 2 (CDC25B)); hydrolase, cell cycle phosphatase, dual specificity protein phosphatase; 1.91A {Homo sapiens} SCOP: c.46.1.1 PDB: 1cwr_A 1cws_A 2uzq_A

Probab=99.82  E-value=1.8e-20  Score=159.26  Aligned_cols=107  Identities=21%  Similarity=0.345  Sum_probs=88.1

Q ss_pred             cCccccHHHHHHHhcCC------CeEEEEcCChhhhhhCCCCCCeeechhhHHhhhhHHHHHHHhhhhhcccCCCCCCcH
Q 026302           91 RVRSVEAKEALRLQKEN------NFVILDVRPEAEFKEAHPPGAINVQIYRLIKEWTAWDIARRAAFAFFGIFSGTEENP  164 (240)
Q Consensus        91 ~~~~Is~~el~~~l~~~------~~~lIDvR~~~ey~~ghIpGAinip~~~l~~~~~~~~~~~~~~~~~~g~~~~~~~~~  164 (240)
                      .+..|+++++.++++++      +++|||||++.||..||||||+|||+..+...+                        
T Consensus        42 ~~~~Is~~el~~~l~~~~~~~~~~~~lIDvR~~~Ey~~gHIpGAinip~~~l~~~~------------------------   97 (211)
T 1qb0_A           42 DLKYISPETMVALLTGKFSNIVDKFVIVDCRYPYEYEGGHIKTAVNLPLERDAESF------------------------   97 (211)
T ss_dssp             TSCEECHHHHHHHHTTTTTTTEEEEEEEECSCHHHHHTCEETTCEECCSHHHHHHH------------------------
T ss_pred             CCCeeCHHHHHHHHhcccccCCCCEEEEECCCHHHHccCcCCCCEECCchHHHHHh------------------------
Confidence            35589999999999863      789999999999999999999999998775432                        


Q ss_pred             HHHHHHHhcC--CCCCcE--EEEcC-CCCCCCCCCCCCCchhhHHHHHHHHHHH----------CCCCceEEccccHHHH
Q 026302          165 EFLQSVESQL--DKDAKI--IVACA-TGGTMKPSQNLPEGQQSRSLIAAYLLVL----------NGYKNVYHLEGGLYKW  229 (240)
Q Consensus       165 ~~~~~~~~~i--~~~~~I--VvyC~-~G~~~~~~~~~~~~~~~rs~~aa~~L~~----------~G~~nV~~l~GG~~~W  229 (240)
                        +... ..+  +++++|  ||||. +|.              ||..++..|+.          +||++|++|+||+.+|
T Consensus        98 --~~~~-~~l~~~~d~~ivvVvyC~~sG~--------------rs~~aa~~L~~~~~~~~~l~~~G~~~V~~L~GG~~~W  160 (211)
T 1qb0_A           98 --LLKS-PIAPCSLDKRVILIFHCEFSSE--------------RGPRMCRFIRERDRAVNDYPSLYYPEMYILKGGYKEF  160 (211)
T ss_dssp             --HHTT-TCCCSSTTSEEEEEEECSSSSS--------------HHHHHHHHHHHHHHHTSSTTCCSCCCEEEETTHHHHH
T ss_pred             --hhhh-hhccccCCCCeEEEEECCCCCc--------------cHHHHHHHHHhhhhhhhhhhhcCCCeEEEECCHHHHH
Confidence              0000 123  378887  88899 887              99999999986          7999999999999999


Q ss_pred             HhCCCCCcc
Q 026302          230 FKEELPEVS  238 (240)
Q Consensus       230 ~~~g~pv~~  238 (240)
                      .++|.|+..
T Consensus       161 ~~~g~~~~~  169 (211)
T 1qb0_A          161 FPQHPNFCE  169 (211)
T ss_dssp             TTTCGGGEE
T ss_pred             HHHCccccC
Confidence            999988743

>3tp9_A Beta-lactamase and rhodanese domain protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG; 2.70A {Alicyclobacillus acidocaldarius subsp}

Probab=99.82  E-value=1.6e-20  Score=176.44  Aligned_cols=103  Identities=29%  Similarity=0.458  Sum_probs=93.8

Q ss_pred             cCccccHHHHHHHhcCCCeEEEEcCChhhhhhCCCCCCeeechhhHHhhhhHHHHHHHhhhhhcccCCCCCCcHHHHHHH
Q 026302           91 RVRSVEAKEALRLQKENNFVILDVRPEAEFKEAHPPGAINVQIYRLIKEWTAWDIARRAAFAFFGIFSGTEENPEFLQSV  170 (240)
Q Consensus        91 ~~~~Is~~el~~~l~~~~~~lIDvR~~~ey~~ghIpGAinip~~~l~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~  170 (240)
                      ....|+++++.+.+++++.+|||||++.||..||||||+|+|+.++.+..                              
T Consensus       372 ~~~~i~~~~l~~~~~~~~~~lvDvR~~~e~~~ghIpgA~~ip~~~l~~~~------------------------------  421 (474)
T 3tp9_A          372 SYANVSPDEVRGALAQQGLWLLDVRNVDEWAGGHLPQAHHIPLSKLAAHI------------------------------  421 (474)
T ss_dssp             CCEEECHHHHHHTTTTTCCEEEECSCHHHHHHCBCTTCEECCHHHHTTTG------------------------------
T ss_pred             cccccCHHHHHHHhcCCCcEEEECCCHHHHhcCcCCCCEECCHHHHHHHH------------------------------
Confidence            34679999999999888899999999999999999999999998875432                              


Q ss_pred             HhcCCCCCcEEEEcCCCCCCCCCCCCCCchhhHHHHHHHHHHHCCCCceEEccccHHHHHhCCCCCcc
Q 026302          171 ESQLDKDAKIIVACATGGTMKPSQNLPEGQQSRSLIAAYLLVLNGYKNVYHLEGGLYKWFKEELPEVS  238 (240)
Q Consensus       171 ~~~i~~~~~IVvyC~~G~~~~~~~~~~~~~~~rs~~aa~~L~~~G~~nV~~l~GG~~~W~~~g~pv~~  238 (240)
                       ..++++++||+||.+|.              ||..++..|+.+||+||++|+|||.+|.++|+|+++
T Consensus       422 -~~l~~~~~vvv~C~~G~--------------ra~~a~~~L~~~G~~~v~~~~Gg~~~W~~~g~p~~~  474 (474)
T 3tp9_A          422 -HDVPRDGSVCVYCRTGG--------------RSAIAASLLRAHGVGDVRNMVGGYEAWRGKGFPVEA  474 (474)
T ss_dssp             -GGSCSSSCEEEECSSSH--------------HHHHHHHHHHHHTCSSEEEETTHHHHHHHTTCCCBC
T ss_pred             -hcCCCCCEEEEECCCCH--------------HHHHHHHHHHHcCCCCEEEecChHHHHHhCCCCCCC
Confidence             35889999999999997              999999999999999999999999999999999974

>2a2k_A M-phase inducer phosphatase 2; dual specificity, substrate trapping, active site mutant, hydrolase; 1.52A {Homo sapiens} PDB: 2ifv_A 1ymd_A 1ym9_A 1ymk_A 1yml_A 1ys0_A 1cwt_A 2ifd_A

Probab=99.82  E-value=1.7e-20  Score=154.34  Aligned_cols=107  Identities=20%  Similarity=0.317  Sum_probs=83.9

Q ss_pred             cCccccHHHHHHHhcC------CCeEEEEcCChhhhhhCCCCCCeeechhhHHhhhhHHHHHHHhhhhhcccCCCCCCcH
Q 026302           91 RVRSVEAKEALRLQKE------NNFVILDVRPEAEFKEAHPPGAINVQIYRLIKEWTAWDIARRAAFAFFGIFSGTEENP  164 (240)
Q Consensus        91 ~~~~Is~~el~~~l~~------~~~~lIDvR~~~ey~~ghIpGAinip~~~l~~~~~~~~~~~~~~~~~~g~~~~~~~~~  164 (240)
                      .+..|+++++.+++++      ++++|||||++.||..||||||+|||+..+...+                        
T Consensus        22 ~~~~is~~el~~~l~~~~~~~~~~~~liDvR~~~ey~~ghIpgAinip~~~l~~~~------------------------   77 (175)
T 2a2k_A           22 DLKYISPETMVALLTGKFSNIVDKFVIVDCRYPYEYEGGHIKTAVNLPLERDAESF------------------------   77 (175)
T ss_dssp             TSCEECHHHHHHHHTTTTTTTEEEEEEEECSCHHHHHTCEETTCEECCSHHHHHHH------------------------
T ss_pred             CCceeCHHHHHHHHhcccccCCCCEEEEECCCHHHHcCCcCCCcEECChhHHHHHh------------------------
Confidence            4568999999999986      3789999999999999999999999998775432                        


Q ss_pred             HHHHHH-HhcCCCCCcEEE--EcC-CCCCCCCCCCCCCchhhHHHHHHHHHHH----------CCCCceEEccccHHHHH
Q 026302          165 EFLQSV-ESQLDKDAKIIV--ACA-TGGTMKPSQNLPEGQQSRSLIAAYLLVL----------NGYKNVYHLEGGLYKWF  230 (240)
Q Consensus       165 ~~~~~~-~~~i~~~~~IVv--yC~-~G~~~~~~~~~~~~~~~rs~~aa~~L~~----------~G~~nV~~l~GG~~~W~  230 (240)
                        +... ...++++++|||  ||. +|.              ||..++..|++          +||+||++|+||+.+|.
T Consensus        78 --~~~~~~~~~~~~~~ivvv~yC~~~g~--------------rs~~aa~~L~~~~~~~~~l~~~G~~~V~~L~GG~~~W~  141 (175)
T 2a2k_A           78 --LLKSPIAPCSLDKRVILIFHSEFSSE--------------RGPRMCRFIRERDRAVNDYPSLYYPEMYILKGGYKEFF  141 (175)
T ss_dssp             --HHSSCCCC----CEEEEEEECSSSSS--------------HHHHHHHHHHHHHHHTSSTTCCSCCCEEEETTHHHHHT
T ss_pred             --hhhhhhccccCCCCeEEEEECCCCCC--------------ccHHHHHHHHHhhhhhhhhhhcCCceEEEEcCCHHHHH
Confidence              0000 001247888855  698 777              99999999985          59999999999999999


Q ss_pred             hCCCCCc
Q 026302          231 KEELPEV  237 (240)
Q Consensus       231 ~~g~pv~  237 (240)
                      ++|.|+.
T Consensus       142 ~~~~~~~  148 (175)
T 2a2k_A          142 PQHPNFC  148 (175)
T ss_dssp             TTCGGGE
T ss_pred             HHCcccc
Confidence            9998864

>2vsw_A Dual specificity protein phosphatase 16; hydrolase, dual specificity phosphatase, nucleus, cytoplasm, rhodanese domain, CAsp8; 2.20A {Homo sapiens} PDB: 3tg3_A

Probab=99.82  E-value=7.6e-21  Score=152.90  Aligned_cols=116  Identities=19%  Similarity=0.253  Sum_probs=83.6

Q ss_pred             ccccHHHHHHHhcC--CCeEEEEcCChhhhhhCCCCCCeeechhhHHhhhhHHHHHHHhhhhhcccCCCCCCcHHHH-HH
Q 026302           93 RSVEAKEALRLQKE--NNFVILDVRPEAEFKEAHPPGAINVQIYRLIKEWTAWDIARRAAFAFFGIFSGTEENPEFL-QS  169 (240)
Q Consensus        93 ~~Is~~el~~~l~~--~~~~lIDvR~~~ey~~ghIpGAinip~~~l~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~-~~  169 (240)
                      ..|+++|+.+++++  ++++|||||++.||..||||||+|||+..+..+...               .+.....+++ .+
T Consensus         4 ~~Is~~~l~~~l~~~~~~~~iiDvR~~~ey~~gHIpgAinip~~~l~~~~~~---------------~~~~~~~~ll~~~   68 (153)
T 2vsw_A            4 TQIVTERLVALLESGTEKVLLIDSRPFVEYNTSHILEAININCSKLMKRRLQ---------------QDKVLITELIQHS   68 (153)
T ss_dssp             EEECHHHHHHHHTSTTCCEEEEECSCHHHHHHCEETTCEECCCCHHHHHHHH---------------TTSSCHHHHHHHS
T ss_pred             ccccHHHHHHHHhcCCCCEEEEECCCHHHhccCccCCCeeeChHHHHHhhhh---------------cCCcCHHHhcCch
Confidence            36899999999974  579999999999999999999999999877432100               0000111221 00


Q ss_pred             HH--hcCCCCCcEEEEcCCCCCCCCCCCCCCchhhHHHHH------HHHHHHC--CCCceEEccccHHHHHhCCCCCc
Q 026302          170 VE--SQLDKDAKIIVACATGGTMKPSQNLPEGQQSRSLIA------AYLLVLN--GYKNVYHLEGGLYKWFKEELPEV  237 (240)
Q Consensus       170 ~~--~~i~~~~~IVvyC~~G~~~~~~~~~~~~~~~rs~~a------a~~L~~~--G~~nV~~l~GG~~~W~~~g~pv~  237 (240)
                      ..  .+++++++|||||.+|.              ++..+      ++.|+.+  ||++|++|+||+.+|.+.+.++.
T Consensus        69 ~~~~~~~~~~~~iVvyc~~g~--------------~s~~a~~~~~~~~~L~~l~~G~~~v~~L~GG~~~W~~~~~~~~  132 (153)
T 2vsw_A           69 AKHKVDIDCSQKVVVYDQSSQ--------------DVASLSSDCFLTVLLGKLEKSFNSVHLLAGGFAEFSRCFPGLC  132 (153)
T ss_dssp             CSSCCCCCTTSEEEEECSSCC--------------CGGGSCTTSHHHHHHHHHHHHCSCEEEETTHHHHHHHHCGGGE
T ss_pred             hhhhhccCCCCeEEEEeCCCC--------------cccccccchHHHHHHHHHHhCCCcEEEEeChHHHHHHhChhhh
Confidence            00  13588999999999987              44433      5667644  99999999999999998765554

>1yt8_A Thiosulfate sulfurtransferase; rhodanase domains, cyanide detoxification, structural genomics, PSI, protein structure initiative; 1.90A {Pseudomonas aeruginosa} SCOP: c.46.1.2 c.46.1.2 c.46.1.2 c.46.1.2

Probab=99.81  E-value=9.8e-20  Score=174.15  Aligned_cols=105  Identities=28%  Similarity=0.319  Sum_probs=92.0

Q ss_pred             CccccHHHHHHHhcCC-CeEEEEcCChhhhhhCCCCCCeeechhhHHhhhhHHHHHHHhhhhhcccCCCCCCcHHHHHHH
Q 026302           92 VRSVEAKEALRLQKEN-NFVILDVRPEAEFKEAHPPGAINVQIYRLIKEWTAWDIARRAAFAFFGIFSGTEENPEFLQSV  170 (240)
Q Consensus        92 ~~~Is~~el~~~l~~~-~~~lIDvR~~~ey~~ghIpGAinip~~~l~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~  170 (240)
                      +..|+++|+.++++++ +++|||||++.||..||||||+|||+..+...                           +..+
T Consensus         6 ~~~is~~~l~~~l~~~~~~~liDvR~~~e~~~ghIpgAv~ip~~~~~~~---------------------------~~~l   58 (539)
T 1yt8_A            6 IAVRTFHDIRAALLARRELALLDVREEDPFAQAHPLFAANLPLSRLELE---------------------------IHAR   58 (539)
T ss_dssp             CEEECHHHHHHHHHHTCCBEEEECSCHHHHTTSBCTTCEECCGGGHHHH---------------------------HHHH
T ss_pred             CcccCHHHHHHHHhCCCCeEEEECCCHHHHhcCcCCCCEECCHHHHHHH---------------------------HHhh
Confidence            5689999999998754 79999999999999999999999999876432                           1122


Q ss_pred             HhcCCCCCcEEEEcCCCCCCCCCCCCCCchhhHHHHHHHHHHHCCCCceEEccccHHHHHhCCCCCccC
Q 026302          171 ESQLDKDAKIIVACATGGTMKPSQNLPEGQQSRSLIAAYLLVLNGYKNVYHLEGGLYKWFKEELPEVSE  239 (240)
Q Consensus       171 ~~~i~~~~~IVvyC~~G~~~~~~~~~~~~~~~rs~~aa~~L~~~G~~nV~~l~GG~~~W~~~g~pv~~~  239 (240)
                        ..+++++|||||.+|.              +|.++++.|+.+||+||++|+||+.+|.++|+|++++
T Consensus        59 --~~~~~~~iVvyc~~g~--------------~s~~a~~~L~~~G~~~V~~L~GG~~~W~~~g~p~~~~  111 (539)
T 1yt8_A           59 --VPRRDTPITVYDDGEG--------------LAPVAAQRLHDLGYSDVALLDGGLSGWRNAGGELFRD  111 (539)
T ss_dssp             --SCCTTSCEEEECSSSS--------------HHHHHHHHHHHTTCSSEEEETTHHHHHHHTTCCCBCS
T ss_pred             --CCCCCCeEEEEECCCC--------------hHHHHHHHHHHcCCCceEEeCCCHHHHHhcCCCcccC
Confidence              3468999999999987              9999999999999999999999999999999999865

>2eg4_A Probable thiosulfate sulfurtransferase; structural genomics, NPPSFA, national Pro protein structural and functional analyses; 1.70A {Thermus thermophilus} PDB: 2eg3_A

Probab=99.81  E-value=5.5e-20  Score=157.34  Aligned_cols=100  Identities=28%  Similarity=0.466  Sum_probs=85.7

Q ss_pred             ccccHHHHHHHhcCCCeEEEEcCChhhhhh----------CCCCCCeeechhhHHhhhhHHHHHHHhhhhhcccCCCCCC
Q 026302           93 RSVEAKEALRLQKENNFVILDVRPEAEFKE----------AHPPGAINVQIYRLIKEWTAWDIARRAAFAFFGIFSGTEE  162 (240)
Q Consensus        93 ~~Is~~el~~~l~~~~~~lIDvR~~~ey~~----------ghIpGAinip~~~l~~~~~~~~~~~~~~~~~~g~~~~~~~  162 (240)
                      ..|+++++.+     +++|||||++.||..          ||||||+|+|+.++...                       
T Consensus       121 ~~i~~~e~~~-----~~~liDvR~~~e~~~~~~~~~~~~~ghIpgA~~ip~~~~~~~-----------------------  172 (230)
T 2eg4_A          121 WLLTADEAAR-----HPLLLDVRSPEEFQGKVHPPCCPRGGRIPGSKNAPLELFLSP-----------------------  172 (230)
T ss_dssp             GBCCHHHHHT-----CSCEEECSCHHHHTTSCCCTTSSSCCBCTTCEECCGGGGGCC-----------------------
T ss_pred             ceeCHHHHhh-----CCeEEeCCCHHHcCcccCCCCCccCCCCCCcEEcCHHHhCCh-----------------------
Confidence            3688888876     688999999999999          99999999999877432                       


Q ss_pred             cHHHHHHHHhcCCCCCcEEEEcCCCCCCCCCCCCCCchhhHHHHHHHHHHHCCCCceEEccccHHHHHhCCCCCcc
Q 026302          163 NPEFLQSVESQLDKDAKIIVACATGGTMKPSQNLPEGQQSRSLIAAYLLVLNGYKNVYHLEGGLYKWFKEELPEVS  238 (240)
Q Consensus       163 ~~~~~~~~~~~i~~~~~IVvyC~~G~~~~~~~~~~~~~~~rs~~aa~~L~~~G~~nV~~l~GG~~~W~~~g~pv~~  238 (240)
                       .+.+.+  .+++++++||+||.+|.              ||..++..|+++| .||++|+|||.+|.+.|+|+++
T Consensus       173 -~e~~~~--~~~~~~~~iv~~C~~G~--------------rs~~a~~~L~~~G-~~v~~~~Gg~~~W~~~g~p~~~  230 (230)
T 2eg4_A          173 -EGLLER--LGLQPGQEVGVYCHSGA--------------RSAVAFFVLRSLG-VRARNYLGSMHEWLQEGLPTEP  230 (230)
T ss_dssp             -TTHHHH--HTCCTTCEEEEECSSSH--------------HHHHHHHHHHHTT-CEEEECSSHHHHHHHTTCCCBC
T ss_pred             -HHHHHh--cCCCCCCCEEEEcCChH--------------HHHHHHHHHHHcC-CCcEEecCcHHHHhhcCCCCCC
Confidence             012222  26899999999999997              9999999999999 8999999999999999999974

>3f4a_A Uncharacterized protein YGR203W; protein phosphatase, rhodanese-like family, structural genomics, PSI-2, protein structure initiative; HET: MSE; 1.80A {Saccharomyces cerevisiae} PDB: 3fs5_A*

Probab=99.80  E-value=6.1e-20  Score=151.27  Aligned_cols=114  Identities=21%  Similarity=0.289  Sum_probs=84.9

Q ss_pred             hcCccccHHHHHHHhcCC-------CeEEEEcCChhhhhhCCCCCCeeechhhHHhhhhHHHHHHHhhhhhcccCCCCCC
Q 026302           90 KRVRSVEAKEALRLQKEN-------NFVILDVRPEAEFKEAHPPGAINVQIYRLIKEWTAWDIARRAAFAFFGIFSGTEE  162 (240)
Q Consensus        90 ~~~~~Is~~el~~~l~~~-------~~~lIDvR~~~ey~~ghIpGAinip~~~l~~~~~~~~~~~~~~~~~~g~~~~~~~  162 (240)
                      ..++.|+++++.++++++       +++|||||+ .||..||||||+|||+..+......                    
T Consensus        28 ~~~~~Is~~eL~~~l~~~~~~~~~~~~~iIDVR~-~Ey~~GHIpGAiniP~~~l~~~~~~--------------------   86 (169)
T 3f4a_A           28 TNVKYLDPTELHRWMQEGHTTTLREPFQVVDVRG-SDYMGGHIKDGWHYAYSRLKQDPEY--------------------   86 (169)
T ss_dssp             CSEEEECHHHHHHHHHHTSCTTTCCCEEEEECCS-TTCTTCEETTCEECCHHHHHHCHHH--------------------
T ss_pred             CCCcEeCHHHHHHHHhcCCccCcCCCEEEEECCc-hHHccCcCCCCEECCHHHhhccccc--------------------
Confidence            346689999999999753       489999999 9999999999999999887543100                    


Q ss_pred             cHHHHHHHHh-cC--CCCCcEEEEcCCCCCCCCCCCCCCchhhHHHHHHHHHHH----CC--CCceEEccccHHHHHhCC
Q 026302          163 NPEFLQSVES-QL--DKDAKIIVACATGGTMKPSQNLPEGQQSRSLIAAYLLVL----NG--YKNVYHLEGGLYKWFKEE  233 (240)
Q Consensus       163 ~~~~~~~~~~-~i--~~~~~IVvyC~~G~~~~~~~~~~~~~~~rs~~aa~~L~~----~G--~~nV~~l~GG~~~W~~~g  233 (240)
                      .+++...+.. .+  ..+++|||||.+|..             |+..++.+|..    .|  +.+|++|+||+.+|.++|
T Consensus        87 l~~l~~~~~~~~~~~~~~~~IVvyC~sG~~-------------Rs~~aa~~l~~~L~~~G~~~~~V~~L~GG~~aW~~~~  153 (169)
T 3f4a_A           87 LRELKHRLLEKQADGRGALNVIFHCMLSQQ-------------RGPSAAMLLLRSLDTAELSRCRLWVLRGGFSRWQSVY  153 (169)
T ss_dssp             HHHHHHHHHHHHHTSSSCEEEEEECSSSSS-------------HHHHHHHHHHHTCCHHHHTTEEEEEETTHHHHHHHHH
T ss_pred             HHHHHHHHHhhcccccCCCeEEEEeCCCCC-------------cHHHHHHHHHHHHHHcCCCCCCEEEECCCHHHHHHHc
Confidence            1222222211 11  224799999999842             89888877654    36  578999999999999998


Q ss_pred             CCCc
Q 026302          234 LPEV  237 (240)
Q Consensus       234 ~pv~  237 (240)
                      .|.+
T Consensus       154 ~~~~  157 (169)
T 3f4a_A          154 GDDE  157 (169)
T ss_dssp             TTCT
T ss_pred             CCcc
Confidence            8764

>1yt8_A Thiosulfate sulfurtransferase; rhodanase domains, cyanide detoxification, structural genomics, PSI, protein structure initiative; 1.90A {Pseudomonas aeruginosa} SCOP: c.46.1.2 c.46.1.2 c.46.1.2 c.46.1.2

Probab=99.80  E-value=1e-19  Score=174.09  Aligned_cols=105  Identities=21%  Similarity=0.320  Sum_probs=94.8

Q ss_pred             hcCccccHHHHHHHhcCCCeEEEEcCChhhhhhCCCCCCeeechhhHHhhhhHHHHHHHhhhhhcccCCCCCCcHHHHHH
Q 026302           90 KRVRSVEAKEALRLQKENNFVILDVRPEAEFKEAHPPGAINVQIYRLIKEWTAWDIARRAAFAFFGIFSGTEENPEFLQS  169 (240)
Q Consensus        90 ~~~~~Is~~el~~~l~~~~~~lIDvR~~~ey~~ghIpGAinip~~~l~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~  169 (240)
                      ..+..|+++++.+++++++.+|||||++.||..||||||+|+|..++....                             
T Consensus       374 ~~~~~i~~~~l~~~l~~~~~~liDvR~~~e~~~ghIpgA~~ip~~~l~~~l-----------------------------  424 (539)
T 1yt8_A          374 PRADTIDPTTLADWLGEPGTRVLDFTASANYAKRHIPGAAWVLRSQLKQAL-----------------------------  424 (539)
T ss_dssp             CCCCEECHHHHHHHTTSTTEEEEECSCHHHHHHCBCTTCEECCGGGHHHHH-----------------------------
T ss_pred             CcCCccCHHHHHHHhcCCCeEEEEeCCHHHhhcCcCCCchhCCHHHHHHHH-----------------------------
Confidence            345689999999999888899999999999999999999999998765431                             


Q ss_pred             HHhcCCCCCcEEEEcCCCCCCCCCCCCCCchhhHHHHHHHHHHHCCCCceEEccccHHHHHhCCCCCccC
Q 026302          170 VESQLDKDAKIIVACATGGTMKPSQNLPEGQQSRSLIAAYLLVLNGYKNVYHLEGGLYKWFKEELPEVSE  239 (240)
Q Consensus       170 ~~~~i~~~~~IVvyC~~G~~~~~~~~~~~~~~~rs~~aa~~L~~~G~~nV~~l~GG~~~W~~~g~pv~~~  239 (240)
                        ..++++++|||||.+|.              ||..++..|+.+||++|++|+||+.+|.++|+|++++
T Consensus       425 --~~l~~~~~ivv~C~sG~--------------rs~~aa~~L~~~G~~~v~~l~GG~~~W~~~g~pv~~~  478 (539)
T 1yt8_A          425 --ERLGTAERYVLTCGSSL--------------LARFAVAEVQALSGKPVFLLDGGTSAWVAAGLPTEDG  478 (539)
T ss_dssp             --HHHCCCSEEEEECSSSH--------------HHHHHHHHHHHHHCSCEEEETTHHHHHHHTTCCCBCS
T ss_pred             --HhCCCCCeEEEEeCCCh--------------HHHHHHHHHHHcCCCCEEEeCCcHHHHHhCCCCcccC
Confidence              23588999999999997              9999999999999999999999999999999999876

>2wlr_A Putative thiosulfate sulfurtransferase YNJE; rhodanese domains; HET: EPE; 1.45A {Escherichia coli} PDB: 2wlx_A* 3ipo_A* 3ipp_A

Probab=99.80  E-value=6.1e-20  Score=170.56  Aligned_cols=117  Identities=17%  Similarity=0.223  Sum_probs=94.2

Q ss_pred             ccccHHHHHHHhc--------CCCeEEEEcC--ChhhhhhCCCCCCeeechhhHHhhhhHHHHHHHhhhhhcccCCCCCC
Q 026302           93 RSVEAKEALRLQK--------ENNFVILDVR--PEAEFKEAHPPGAINVQIYRLIKEWTAWDIARRAAFAFFGIFSGTEE  162 (240)
Q Consensus        93 ~~Is~~el~~~l~--------~~~~~lIDvR--~~~ey~~ghIpGAinip~~~l~~~~~~~~~~~~~~~~~~g~~~~~~~  162 (240)
                      ..++++++.++++        .++++|||||  ++.||..||||||+|+|+.++....             .+.+.   .
T Consensus       124 ~~i~~~~l~~~~~~~~~~~~~~~~~~liDvR~~~~~e~~~ghIpgA~nip~~~~~~~~-------------~~~~~---~  187 (423)
T 2wlr_A          124 QLVYPQWLHDLQQGKEVTAKPAGDWKVIEAAWGAPKLYLISHIPGADYIDTNEVESEP-------------LWNKV---S  187 (423)
T ss_dssp             GEECHHHHHHHHTTCCCTTCCSSCEEEEEEESSSCSHHHHCBCTTCEEEEGGGTEETT-------------TTEEC---C
T ss_pred             cccCHHHHHHHhhccccccccCCCeEEEEecCCCchhhccCcCCCcEEcCHHHhccCC-------------CCCCC---C
Confidence            3689999998887        3478999999  9999999999999999998764310             01111   1


Q ss_pred             cHHHHHHHH-hcCCCCCcEEEEcCCCCCCCCCCCCCCchhhHHHHHHHHHHHCCCCceEEccccHHHHHhCCCCCccC
Q 026302          163 NPEFLQSVE-SQLDKDAKIIVACATGGTMKPSQNLPEGQQSRSLIAAYLLVLNGYKNVYHLEGGLYKWFKEELPEVSE  239 (240)
Q Consensus       163 ~~~~~~~~~-~~i~~~~~IVvyC~~G~~~~~~~~~~~~~~~rs~~aa~~L~~~G~~nV~~l~GG~~~W~~~g~pv~~~  239 (240)
                      .+++.+.+. .+++++++||+||.+|.              +|..++..|+.+||++|++|+|||.+|...|+|++++
T Consensus       188 ~~~l~~~~~~~gi~~~~~ivvyC~~G~--------------~a~~~~~~L~~~G~~~v~~l~Gg~~~W~~~g~pv~~g  251 (423)
T 2wlr_A          188 DEQLKAMLAKHGIRHDTTVILYGRDVY--------------AAARVAQIMLYAGVKDVRLLDGGWQTWSDAGLPVERG  251 (423)
T ss_dssp             HHHHHHHHHHTTCCTTSEEEEECSSHH--------------HHHHHHHHHHHHTCSCEEEETTTHHHHHHTTCCCBCS
T ss_pred             HHHHHHHHHHcCCCCCCeEEEECCCch--------------HHHHHHHHHHHcCCCCeEEECCCHHHHhhCCCCcccC
Confidence            233333332 25799999999999886              9999999999999999999999999999999999875

>1okg_A Possible 3-mercaptopyruvate sulfurtransferase; rhodanese, prolyl isomerase, catalytic triad, serine protease, leishmania pyruvate; HET: CSR; 2.10A {Leishmania major} SCOP: c.46.1.2 c.46.1.2 d.26.1.3

Probab=99.79  E-value=4e-20  Score=169.84  Aligned_cols=119  Identities=17%  Similarity=0.169  Sum_probs=90.5

Q ss_pred             ccccHHHHHHHhcCCCeEEEEcCC--------hhhhhhCCCCCCeeechhh-HHhhhhHHHHHHHhhhhhcccCCCCCCc
Q 026302           93 RSVEAKEALRLQKENNFVILDVRP--------EAEFKEAHPPGAINVQIYR-LIKEWTAWDIARRAAFAFFGIFSGTEEN  163 (240)
Q Consensus        93 ~~Is~~el~~~l~~~~~~lIDvR~--------~~ey~~ghIpGAinip~~~-l~~~~~~~~~~~~~~~~~~g~~~~~~~~  163 (240)
                      ..|+++|+.+++++  ++|||||+        +.||..||||||+|||+.. +.....        .-.+.+++   +..
T Consensus        14 ~~Is~~el~~~l~~--~~iIDvR~~~~~~~~~~~ey~~gHIpGAi~ip~~~~l~~~~~--------~~~~~~~l---p~~   80 (373)
T 1okg_A           14 VFLDPSEVADHLAE--YRIVDCRYSLKIKDHGSIQYAKEHVKSAIRADVDTNLSKLVP--------TSTARHPL---PPX   80 (373)
T ss_dssp             CEECHHHHTTCGGG--SEEEECCCCSSSTTTTTTHHHHCEETTCEECCTTTTSCCCCT--------TCCCSSCC---CCH
T ss_pred             cEEcHHHHHHHcCC--cEEEEecCCccccccchhHHhhCcCCCCEEeCchhhhhcccc--------cCCccccC---CCH
Confidence            47999999998876  89999998        6999999999999999975 432100        00001111   222


Q ss_pred             HHHHHHHH-hcCCCCCcEEEEc-CCCCCCCCCCCCCCchhhHHH-HHHHHHHHCCCCceEEccccHHHHHhCCCCCccC
Q 026302          164 PEFLQSVE-SQLDKDAKIIVAC-ATGGTMKPSQNLPEGQQSRSL-IAAYLLVLNGYKNVYHLEGGLYKWFKEELPEVSE  239 (240)
Q Consensus       164 ~~~~~~~~-~~i~~~~~IVvyC-~~G~~~~~~~~~~~~~~~rs~-~aa~~L~~~G~~nV~~l~GG~~~W~~~g~pv~~~  239 (240)
                      .+|.+.+. .+++++++||||| .+|.              ++. ++++.|+.+|| ||++|+||+.+|.++|+|++++
T Consensus        81 ~~f~~~l~~~gi~~d~~VVvYc~~~G~--------------rsa~ra~~~L~~~G~-~V~~L~GG~~aW~~~g~pv~~~  144 (373)
T 1okg_A           81 AEFIDWCMANGMAGELPVLCYDDECGA--------------MGGCRLWWMLNSLGA-DAYVINGGFQACKAAGLEMESG  144 (373)
T ss_dssp             HHHHHHHHHTTCSSSSCEEEECSSTTT--------------TTHHHHHHHHHHHTC-CEEEETTTTHHHHTTTCCEECS
T ss_pred             HHHHHHHHHcCCCCCCeEEEEeCCCCc--------------hHHHHHHHHHHHcCC-eEEEeCCCHHHHHhhcCCcccC
Confidence            34433332 2689999999999 6665              665 99999999999 9999999999999999999865

>3op3_A M-phase inducer phosphatase 3; structural genomics, structural genomics consortium, SGC, Al alpha sandwich, kinase, cytosol, hydrolase; 2.63A {Homo sapiens}

Probab=99.79  E-value=1.2e-19  Score=155.38  Aligned_cols=103  Identities=22%  Similarity=0.344  Sum_probs=80.6

Q ss_pred             cCccccHHHHHHHhcCC------CeEEEEcCChhhhhhCCCCCCeeechhhHHhhhhHHHHHHHhhhhhcccCCCCCCcH
Q 026302           91 RVRSVEAKEALRLQKEN------NFVILDVRPEAEFKEAHPPGAINVQIYRLIKEWTAWDIARRAAFAFFGIFSGTEENP  164 (240)
Q Consensus        91 ~~~~Is~~el~~~l~~~------~~~lIDvR~~~ey~~ghIpGAinip~~~l~~~~~~~~~~~~~~~~~~g~~~~~~~~~  164 (240)
                      .++.|+++++.++++++      +++|||||++.||..||||||+|||+.+...+.                        
T Consensus        55 ~~~~Is~~eL~~~l~~~~~~~~~~~~lIDVR~~~Ey~~GHIpGAinIP~~~~l~~~------------------------  110 (216)
T 3op3_A           55 DLKYVNPETVAALLSGKFQGLIEKFYVIDCRYPYEYLGGHIQGALNLYSQEELFNF------------------------  110 (216)
T ss_dssp             SSEEECHHHHHHHHTTTTTTTEEEEEEEECSCHHHHHTSEETTCEECCSHHHHHHH------------------------
T ss_pred             CCCEeCHHHHHHHHhCCCccccCCEEEEEeCcHHHHhcCCccCCEECChHHHHHHH------------------------
Confidence            46789999999999875      689999999999999999999999997643211                        


Q ss_pred             HHHHHH-HhcCCCCC--cEEEEcC-CCCCCCCCCCCCCchhhHHHHHHHHHHHC----------CCCceEEccccHHHHH
Q 026302          165 EFLQSV-ESQLDKDA--KIIVACA-TGGTMKPSQNLPEGQQSRSLIAAYLLVLN----------GYKNVYHLEGGLYKWF  230 (240)
Q Consensus       165 ~~~~~~-~~~i~~~~--~IVvyC~-~G~~~~~~~~~~~~~~~rs~~aa~~L~~~----------G~~nV~~l~GG~~~W~  230 (240)
                        +... ....++++  .|||||. +|.              ||..++..|+..          ||++|++|+||+.+|.
T Consensus       111 --l~~~~~~~~~~~k~~~VVvyC~~SG~--------------Rs~~aa~~L~~~~~~~~~y~~lGf~~V~~L~GG~~aW~  174 (216)
T 3op3_A          111 --FLKKPIVPLDTQKRIIIVFHCEFSSE--------------RGPRMCRCLREEDRSLNQYPALYYPELYILKGGYRDFF  174 (216)
T ss_dssp             --HTSSCCCCSSTTSEEEEEEECCC--C--------------CHHHHHHHHHHHHHHTSSTTCCSCCCEEEETTHHHHHT
T ss_pred             --HhhccccccccCCCCEEEEEeCCCCh--------------HHHHHHHHHHHcCcccccccccCCCcEEEECCcHHHHH
Confidence              0000 00123344  4999999 887              999999999886          8999999999999999


Q ss_pred             hCC
Q 026302          231 KEE  233 (240)
Q Consensus       231 ~~g  233 (240)
                      ++.
T Consensus       175 ~~~  177 (216)
T 3op3_A          175 PEY  177 (216)
T ss_dssp             TTC
T ss_pred             HhC
Confidence            863

>2wlr_A Putative thiosulfate sulfurtransferase YNJE; rhodanese domains; HET: EPE; 1.45A {Escherichia coli} PDB: 2wlx_A* 3ipo_A* 3ipp_A

Probab=99.78  E-value=2.3e-19  Score=166.66  Aligned_cols=123  Identities=20%  Similarity=0.271  Sum_probs=93.8

Q ss_pred             ccccHHHHHHHhcCCCeEEEEcCChhhh-----------hhCCCCCCeeechhhHHhhhhHHHHHHHhhhhhcccCCCCC
Q 026302           93 RSVEAKEALRLQKENNFVILDVRPEAEF-----------KEAHPPGAINVQIYRLIKEWTAWDIARRAAFAFFGIFSGTE  161 (240)
Q Consensus        93 ~~Is~~el~~~l~~~~~~lIDvR~~~ey-----------~~ghIpGAinip~~~l~~~~~~~~~~~~~~~~~~g~~~~~~  161 (240)
                      ..|+.+++.+++++++.+|||||++.||           ..||||||+|+|+......+..          +.. ..+..
T Consensus       272 ~~i~~~e~~~~l~~~~~~liDvR~~~e~~G~~~~~~~~~~~GhIpgAi~ip~~~~~~~~~~----------~~~-~~~~~  340 (423)
T 2wlr_A          272 LMLDMEQARGLLHRQDASLVSIRSWPEFIGTTSGYSYIKPKGEIAGARWGHAGSDSTHMED----------FHN-PDGTM  340 (423)
T ss_dssp             GEECHHHHHTTTTCSSEEEEECSCHHHHHTSCCSSTTCCCCSEETTCEECCCCSSTTCCGG----------GBC-TTSSB
T ss_pred             heecHHHHHHHhcCCCceEEecCchhheeeeccCCCCCCcCCCCCCccccccccccccHHH----------HcC-CCCcC
Confidence            3689999999988778999999999999           8999999999998621100000          000 00111


Q ss_pred             CcH-HHHHHHH-hcCCCCCcEEEEcCCCCCCCCCCCCCCchhhHHHHHHHHHHHCCCCceEEccccHHHHHh-CCCCCcc
Q 026302          162 ENP-EFLQSVE-SQLDKDAKIIVACATGGTMKPSQNLPEGQQSRSLIAAYLLVLNGYKNVYHLEGGLYKWFK-EELPEVS  238 (240)
Q Consensus       162 ~~~-~~~~~~~-~~i~~~~~IVvyC~~G~~~~~~~~~~~~~~~rs~~aa~~L~~~G~~nV~~l~GG~~~W~~-~g~pv~~  238 (240)
                      ..+ ++.+.+. .+++++++|||||.+|.              ||..++..|+.+||+||++|+|||.+|.. .|+|+++
T Consensus       341 ~~~~~l~~~~~~~~~~~~~~ivvyC~sG~--------------rs~~aa~~L~~~G~~~v~~~~GG~~~W~~~~~~Pv~~  406 (423)
T 2wlr_A          341 RSADDITAMWKAWNIKPEQQVSFYCGTGW--------------RASETFMYARAMGWKNVSVYDGGWYEWSSDPKNPVAT  406 (423)
T ss_dssp             CCHHHHHHHHHTTTCCTTSEEEEECSSSH--------------HHHHHHHHHHHTTCSSEEEESSHHHHHTTSTTSCEEC
T ss_pred             CCHHHHHHHHHHcCCCCCCcEEEECCcHH--------------HHHHHHHHHHHcCCCCcceeCccHHHHhcCCCCCccc
Confidence            122 3333332 36789999999999997              99999999999999999999999999998 8999987


Q ss_pred             CC
Q 026302          239 EE  240 (240)
Q Consensus       239 ~~  240 (240)
                      ++
T Consensus       407 ~~  408 (423)
T 2wlr_A          407 GE  408 (423)
T ss_dssp             SS
T ss_pred             CC
Confidence            63

>1hzm_A Dual specificity protein phosphatase 6; hydrolase; NMR {Homo sapiens} SCOP: c.46.1.1

Probab=99.77  E-value=6.4e-20  Score=147.28  Aligned_cols=125  Identities=18%  Similarity=0.261  Sum_probs=81.2

Q ss_pred             CccccHHHHHHHhcCC--CeEEEEcCChhhhhhCCCCCCeeechhhHHhh-hhHHHHHHHhhhhhcccCCCCCCcHHHHH
Q 026302           92 VRSVEAKEALRLQKEN--NFVILDVRPEAEFKEAHPPGAINVQIYRLIKE-WTAWDIARRAAFAFFGIFSGTEENPEFLQ  168 (240)
Q Consensus        92 ~~~Is~~el~~~l~~~--~~~lIDvR~~~ey~~ghIpGAinip~~~l~~~-~~~~~~~~~~~~~~~g~~~~~~~~~~~~~  168 (240)
                      +..|+++++.++++++  +++|||||++.||..||||||+|||+..+..+ ...      ....+.+.++    .++..+
T Consensus        15 ~~~is~~~l~~~l~~~~~~~~liDvR~~~ey~~gHIpgAinip~~~~~~~~~~~------~~~~~~~~l~----~~~~~~   84 (154)
T 1hzm_A           15 AISKTVAWLNEQLELGNERLLLMDCRPQELYESSHIESAINVAIPGIMLRRLQK------GNLPVRALFT----RGEDRD   84 (154)
T ss_dssp             SSBSCCCCHHHHHHHCSSSCEEECCSTTHHHHHHTSSSCCCCCCSSHHHHTBCC------SCCCTTTTST----TSHHHH
T ss_pred             ccccCHHHHHHHHhCCCCCEEEEEcCCHHHHhhccccCceEeCccHHHHhhhhc------CcccHHHhCC----CHHHHH
Confidence            4578999999988765  79999999999999999999999999775411 000      0000001111    112223


Q ss_pred             HHHhcCCCCCcEEEEcCCCCCCCCCCCCCCchhhHHHHHHHHHHH---CCCCceEEccccHHHHHhCCCCC
Q 026302          169 SVESQLDKDAKIIVACATGGTMKPSQNLPEGQQSRSLIAAYLLVL---NGYKNVYHLEGGLYKWFKEELPE  236 (240)
Q Consensus       169 ~~~~~i~~~~~IVvyC~~G~~~~~~~~~~~~~~~rs~~aa~~L~~---~G~~nV~~l~GG~~~W~~~g~pv  236 (240)
                      .+ .+++++++|||||.+|......    .+   .+..+++.|+.   .||+ |++|+||+.+|... +|.
T Consensus        85 ~~-~~~~~~~~iVvyc~~g~~~~~~----~~---aa~~~~~~l~~l~~~G~~-v~~L~GG~~~W~~~-~p~  145 (154)
T 1hzm_A           85 RF-TRRCGTDTVVLYDESSSDWNEN----TG---GESLLGLLLKKLKDEGCR-AFYLEGGFSKFQAE-FSL  145 (154)
T ss_dssp             HH-HHSTTSSCEEECCCSSSSSCSC----SS---CCSHHHHHHHHHHHTTCC-CEECCCCHHHHHHH-HCS
T ss_pred             HH-hccCCCCeEEEEeCCCCccccc----cc---cchHHHHHHHHHHHCCCc-eEEEcChHHHHHHH-ChH
Confidence            33 4578899999999998621000    00   01334555554   5998 99999999999875 443

>3tg1_B Dual specificity protein phosphatase 10; kinase/rhodanese-like domain, docking interaction, transfera hydrolase complex; 2.71A {Homo sapiens}

Probab=99.77  E-value=1.3e-18  Score=141.13  Aligned_cols=127  Identities=18%  Similarity=0.209  Sum_probs=81.4

Q ss_pred             hcCccccHHHHHHHhc--------CCCeEEEEcCChhhhhhCCCCCCeeechhhHHhhhhHHHHHHHhhhhhcccCCCCC
Q 026302           90 KRVRSVEAKEALRLQK--------ENNFVILDVRPEAEFKEAHPPGAINVQIYRLIKEWTAWDIARRAAFAFFGIFSGTE  161 (240)
Q Consensus        90 ~~~~~Is~~el~~~l~--------~~~~~lIDvR~~~ey~~ghIpGAinip~~~l~~~~~~~~~~~~~~~~~~g~~~~~~  161 (240)
                      ..+..|+++|+.++++        +++.+|||||++.||..||||||+|+|+..+..+... .   ...+.+...+....
T Consensus         8 ~~~~~is~~el~~~l~~~~~~~~~~~~~~liDvR~~~e~~~ghI~ga~~i~~~~l~~~~~~-~---~~~~~~~~~~~~~~   83 (158)
T 3tg1_B            8 ASIKIIYPNDLAKKMTKCSKSHLPSQGPVIIDCRPFMEYNKSHIQGAVHINCADKISRRRL-Q---QGKITVLDLISCRE   83 (158)
T ss_dssp             ---CEECHHHHHHHHCC----------CEEEECSCHHHHHHCCBTTCEECCCSSHHHHHHH-T---TSSCCHHHHTCCCC
T ss_pred             CCCcEecHHHHHHHHHhcccccCCCCCEEEEEcCCHHHHHhCCCCCceeechhHHHHHhhh-h---cCcccHHhhcCCHH
Confidence            3466899999999998        3478999999999999999999999999887421100 0   00000000000000


Q ss_pred             CcHHHHHHHHhcCCCCCcEEEEcCCCCCCCCCCCCCCchhhHHHHHHHHHHHCCCCceEEccccHHHHHhC
Q 026302          162 ENPEFLQSVESQLDKDAKIIVACATGGTMKPSQNLPEGQQSRSLIAAYLLVLNGYKNVYHLEGGLYKWFKE  232 (240)
Q Consensus       162 ~~~~~~~~~~~~i~~~~~IVvyC~~G~~~~~~~~~~~~~~~rs~~aa~~L~~~G~~nV~~l~GG~~~W~~~  232 (240)
                      ...    .+  ...++++|||||.+|.++.-.     ....++..++..|+..|| +|++|+|||.+|...
T Consensus        84 ~~~----~~--~~~~~~~IVvyc~~g~~~~~~-----~~~~~s~~a~~~L~~~G~-~v~~L~GG~~~W~~~  142 (158)
T 3tg1_B           84 GKD----SF--KRIFSKEIIVYDENTNEPSRV-----MPSQPLHIVLESLKREGK-EPLVLKGGLSSFKQN  142 (158)
T ss_dssp             SSC----SS--TTTTTSCEEEECSCCSCTTSC-----CSSSHHHHHHHHHHTTTC-CEEEETTHHHHHTSS
T ss_pred             HHH----HH--hccCCCeEEEEECCCCccccc-----CcchHHHHHHHHHHhCCC-cEEEeCCcHHHHHHH
Confidence            000    00  113578999999999521000     000179999999999999 699999999999876

>3ntd_A FAD-dependent pyridine nucleotide-disulphide oxidoreductase; COA, persulfide reductase, rhodanese; HET: COA FAD; 1.99A {Shewanella loihica} PDB: 3nta_A* 3nt6_A*

Probab=99.74  E-value=1.8e-18  Score=164.47  Aligned_cols=97  Identities=27%  Similarity=0.376  Sum_probs=86.9

Q ss_pred             hhcCccccHHHHHHHhcCCCeEEEEcCChhhhhhCCCCCCeeechhhHHhhhhHHHHHHHhhhhhcccCCCCCCcHHHHH
Q 026302           89 QKRVRSVEAKEALRLQKENNFVILDVRPEAEFKEAHPPGAINVQIYRLIKEWTAWDIARRAAFAFFGIFSGTEENPEFLQ  168 (240)
Q Consensus        89 ~~~~~~Is~~el~~~l~~~~~~lIDvR~~~ey~~ghIpGAinip~~~l~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~  168 (240)
                      ...+..|+++|+.++  .++++|||||++.||..||||||+|+|+.++.+..                            
T Consensus       469 ~~~~~~i~~~~~~~~--~~~~~~iDvR~~~e~~~~~i~ga~~ip~~~l~~~~----------------------------  518 (565)
T 3ntd_A          469 KGDATPIHFDQIDNL--SEDQLLLDVRNPGELQNGGLEGAVNIPVDELRDRM----------------------------  518 (565)
T ss_dssp             HTSCCEECTTTTTSC--CTTEEEEECSCGGGGGGCCCTTCEECCGGGTTTSG----------------------------
T ss_pred             ccccceeeHHHHHhC--CCCcEEEEeCCHHHHhcCCCCCcEECCHHHHHHHH----------------------------
Confidence            467889999999887  55899999999999999999999999998775432                            


Q ss_pred             HHHhcCCCCCcEEEEcCCCCCCCCCCCCCCchhhHHHHHHHHHHHCCCCceEEccccHHHHHhCC
Q 026302          169 SVESQLDKDAKIIVACATGGTMKPSQNLPEGQQSRSLIAAYLLVLNGYKNVYHLEGGLYKWFKEE  233 (240)
Q Consensus       169 ~~~~~i~~~~~IVvyC~~G~~~~~~~~~~~~~~~rs~~aa~~L~~~G~~nV~~l~GG~~~W~~~g  233 (240)
                         ..++++++|||||.+|.              ||..+++.|+++|| ||++|+||+.+|.++|
T Consensus       519 ---~~~~~~~~iv~~c~~g~--------------rs~~a~~~l~~~G~-~v~~l~gG~~~w~~~g  565 (565)
T 3ntd_A          519 ---HELPKDKEIIIFSQVGL--------------RGNVAYRQLVNNGY-RARNLIGGYRTYKFAS  565 (565)
T ss_dssp             ---GGSCTTSEEEEECSSSH--------------HHHHHHHHHHHTTC-CEEEETTHHHHHHHTC
T ss_pred             ---hhcCCcCeEEEEeCCch--------------HHHHHHHHHHHcCC-CEEEEcChHHHHHhCc
Confidence               35789999999999997              99999999999999 9999999999999876

>2gwf_A Ubiquitin carboxyl-terminal hydrolase 8; protein-protein complex, E3 ligase, protein ubiquitination, hydrolase, protease, UBL conjugation pathway; 2.30A {Homo sapiens} SCOP: c.46.1.4

Probab=99.73  E-value=6.5e-18  Score=137.25  Aligned_cols=124  Identities=15%  Similarity=0.147  Sum_probs=79.2

Q ss_pred             hcCccccHHHHHHHhcCC--CeEEEEcCChhhhhhCCCCCCeeechhhHHhhhhHHHHHHHhhhhhcccCCCCCCcHHHH
Q 026302           90 KRVRSVEAKEALRLQKEN--NFVILDVRPEAEFKEAHPPGAINVQIYRLIKEWTAWDIARRAAFAFFGIFSGTEENPEFL  167 (240)
Q Consensus        90 ~~~~~Is~~el~~~l~~~--~~~lIDvR~~~ey~~ghIpGAinip~~~l~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~  167 (240)
                      .....|+++|+.++++++  +++|||||++.||..||||||+|||+..+...........              .+++..
T Consensus        17 ~~~~~is~~~l~~~l~~~~~~~~liDvR~~~ey~~gHI~gAinip~~~l~~~~~~~~l~~--------------~lp~~~   82 (157)
T 2gwf_A           17 RGSGAITAKELYTMMTDKNISLIIMDARRMQDYQDSCILHSLSVPEEAISPGVTASWIEA--------------HLPDDS   82 (157)
T ss_dssp             --CCEECHHHHHHHHHSTTSCEEEEECSCHHHHHHSCBTTCEECCGGGCCTTCCHHHHHH--------------TSCHHH
T ss_pred             CCCCccCHHHHHHHHhcCCCCeEEEECCCHHHHHhcCccCCcccCHHHcCCCCcHHHHHH--------------HcCHHH
Confidence            445689999999999876  8999999999999999999999999976532110000000              012222


Q ss_pred             HHHHhcCCCCCcEEEEcCCCCCCCCCCCCCCchhhHHHHHHHHHH----HC----CCC-ceEEccccHHHHHhCCCCCcc
Q 026302          168 QSVESQLDKDAKIIVACATGGTMKPSQNLPEGQQSRSLIAAYLLV----LN----GYK-NVYHLEGGLYKWFKEELPEVS  238 (240)
Q Consensus       168 ~~~~~~i~~~~~IVvyC~~G~~~~~~~~~~~~~~~rs~~aa~~L~----~~----G~~-nV~~l~GG~~~W~~~g~pv~~  238 (240)
                      ..+.....+...|||||..+....          .++..+++.|.    +.    ||. +|++|+||+.+|.+. +|...
T Consensus        83 ~~l~~~~~~~~~VVvy~~~~~~~~----------~~a~~~l~~L~~~L~~~~~~~~~~~~V~~L~GG~~aW~~~-~p~~~  151 (157)
T 2gwf_A           83 KDTWKKRGNVEYVVLLDWFSSAKD----------LQIGTTLRSLKDALFKWESKTVLRNEPLVLEGGYENWLLC-YPQYT  151 (157)
T ss_dssp             HHHHHTTTTSSEEEEECSSCCGGG----------CCTTCHHHHHHHHHHTSCCSSCCSSCCEEETTHHHHHHHH-CGGGB
T ss_pred             HHHHHhcCCCCEEEEEcCCCCccc----------cCcccHHHHHHHHHHhhccccccCCceEEEccHHHHHHHH-Chhhc
Confidence            222233445556899998875100          01233444443    33    454 499999999999984 77653

>3utn_X Thiosulfate sulfurtransferase TUM1; rhodanese-like domain; 1.90A {Saccharomyces cerevisiae}

Probab=99.73  E-value=2.8e-18  Score=155.15  Aligned_cols=121  Identities=18%  Similarity=0.229  Sum_probs=96.9

Q ss_pred             ccccHHHHHHHhcCC---CeEEEEcC---------Chhhh-hhCCCCCCeeechhhHHhhhhHHHHHHHhhhhhcccCCC
Q 026302           93 RSVEAKEALRLQKEN---NFVILDVR---------PEAEF-KEAHPPGAINVQIYRLIKEWTAWDIARRAAFAFFGIFSG  159 (240)
Q Consensus        93 ~~Is~~el~~~l~~~---~~~lIDvR---------~~~ey-~~ghIpGAinip~~~l~~~~~~~~~~~~~~~~~~g~~~~  159 (240)
                      +.|++++|.++++++   .+++||++         ...|| ++||||||++++++.+.+..          -.+.++++.
T Consensus        28 ~LIsp~~l~~ll~~~~~~rvv~lDasw~lP~~~r~~~~E~~~~~HIPGAv~~Dld~~~d~~----------~~~ph~LP~   97 (327)
T 3utn_X           28 DLISPKAFVKLVASEKVHRIVPVDATWYLPSWKLDNKVDFLTKPRIPNSIFFDIDAISDKK----------SPYPHMFPT   97 (327)
T ss_dssp             EEECHHHHHHHHHHCSSSCEEEEECCCCCGGGCCCHHHHHHHSCBCTTCEECCTTTSSCTT----------SSSTTCCCC
T ss_pred             cccCHHHHHHHHhCCCCCcEEEEEecCCCCCCCCCHHHHHHhhCcCCCCeeeChHHhcCCC----------CCCCCCCcC
Confidence            369999999999754   48899985         24577 68999999999997654321          123455665


Q ss_pred             CCCcHHHHHHHHhcCCCCCcEEEEcCCCCCCCCCCCCCCchhhHHHHHHHHHHHCCCCceEEccccHHHHHhCCCCCccC
Q 026302          160 TEENPEFLQSVESQLDKDAKIIVACATGGTMKPSQNLPEGQQSRSLIAAYLLVLNGYKNVYHLEGGLYKWFKEELPEVSE  239 (240)
Q Consensus       160 ~~~~~~~~~~~~~~i~~~~~IVvyC~~G~~~~~~~~~~~~~~~rs~~aa~~L~~~G~~nV~~l~GG~~~W~~~g~pv~~~  239 (240)
                      .+.+.+.+.++  +|+++++||||++.+.             ..|.++++.|+.+|+++|++|+|| .+|.++|+|++++
T Consensus        98 ~~~f~~~l~~l--GI~~d~~VVvYD~~~~-------------~~AaR~wW~Lr~~Gh~~V~vLdGg-~aW~~~g~p~~~~  161 (327)
T 3utn_X           98 KKVFDDAMSNL--GVQKDDILVVYDRVGN-------------FSSPRCAWTLGVMGHPKVYLLNNF-NQYREFKYPLDSS  161 (327)
T ss_dssp             HHHHHHHHHHT--TCCTTCEEEEECSSSS-------------SSHHHHHHHHHHTTCSEEEEESCH-HHHHHTTCCCBCC
T ss_pred             HHHHHHHHHHc--CCCCCCEEEEEeCCCC-------------cHHHHHHHHHHHcCCCceeecccH-HHHHHhCCCcccC
Confidence            55666666665  8999999999999886             278999999999999999999977 8999999999876

>1whb_A KIAA0055; deubiqutinating enzyme, UBPY, structural genomics, riken structural genomics/proteomics initiative, RSGI, hydrolase; NMR {Homo sapiens} SCOP: c.46.1.4

Probab=99.73  E-value=3.9e-18  Score=138.24  Aligned_cols=124  Identities=15%  Similarity=0.133  Sum_probs=79.3

Q ss_pred             cCccccHHHHHHHhcCC--CeEEEEcCChhhhhhCCCCCCeeechhhHHhhhhHHHHHHHhhhhhcccCCCCCCcHHHHH
Q 026302           91 RVRSVEAKEALRLQKEN--NFVILDVRPEAEFKEAHPPGAINVQIYRLIKEWTAWDIARRAAFAFFGIFSGTEENPEFLQ  168 (240)
Q Consensus        91 ~~~~Is~~el~~~l~~~--~~~lIDvR~~~ey~~ghIpGAinip~~~l~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~  168 (240)
                      ....|+++|+.++++.+  +++|||||++.||..||||||+|||+..+..........        ..      +++...
T Consensus        13 ~~~~i~~~~l~~~l~~~~~~~~liDvR~~~ey~~gHI~gainip~~~~~~~~~~~~l~--------~~------lp~~~~   78 (157)
T 1whb_A           13 EKGAITAKELYTMMTDKNISLIIMDARRMQDYQDSCILHSLSVPEEAISPGVTASWIE--------AH------LPDDSK   78 (157)
T ss_dssp             CCSEECHHHHHHHHTCSSSCEEEEEESCHHHHHHCCBTTCEEECSSSCCTTCCHHHHH--------HS------CCTTHH
T ss_pred             cCCccCHHHHHHHHhcCCCCeEEEECCCHHHHHhccccCCcccCHHHccCCCcHHHHH--------HH------CChHHH
Confidence            34579999999999876  899999999999999999999999987553211000000        00      011111


Q ss_pred             HHHhcCCCCCcEEEEcCCCCCCCCCCCCCCchhhHHHHHHHHHHH----C----CCC-ceEEccccHHHHHhCCCCCccC
Q 026302          169 SVESQLDKDAKIIVACATGGTMKPSQNLPEGQQSRSLIAAYLLVL----N----GYK-NVYHLEGGLYKWFKEELPEVSE  239 (240)
Q Consensus       169 ~~~~~i~~~~~IVvyC~~G~~~~~~~~~~~~~~~rs~~aa~~L~~----~----G~~-nV~~l~GG~~~W~~~g~pv~~~  239 (240)
                      .+.....+...|||||..+...          ..++..+++.|..    .    ||. +|++|+||+.+|.+. +|+..+
T Consensus        79 ~~~~~~~~~~~VVvy~~~~~~~----------~~~a~~~~~~L~~~L~~~~~~~~~~~~V~~L~GG~~aW~~~-~p~~~~  147 (157)
T 1whb_A           79 DTWKKRGNVEYVVLLDWFSSAK----------DLQIGTTLRSLKDALFKWESKTVLRNEPLVLEGGYENWLLC-YPQYTT  147 (157)
T ss_dssp             HHHHGGGTSSEEEEECSSCCGG----------GCCTTCHHHHHHHTTTTTCSSCCCSSCCEEESSCHHHHHHH-CGGGBS
T ss_pred             HHHHhcCCCCEEEEECCCCCcc----------ccccccHHHHHHHHHHHhccccccCCCeEEEcchHHHHHHH-ChhhhC
Confidence            1112223445699999887510          0023445566552    2    454 499999999999985 876543

>3ics_A Coenzyme A-disulfide reductase; pyridine nucleotide-disulfide oxidoreductase class I, rhodan coenzyme A, flavin adenine dinucleotide; HET: FAD COA ADP; 1.94A {Bacillus anthracis} PDB: 3icr_A* 3ict_A*

Probab=99.73  E-value=7.2e-18  Score=161.72  Aligned_cols=100  Identities=27%  Similarity=0.424  Sum_probs=89.0

Q ss_pred             HhhhcCccccHHHHHHHhcCCCeEEEEcCChhhhhhCCCCCCeeechhhHHhhhhHHHHHHHhhhhhcccCCCCCCcHHH
Q 026302           87 LLQKRVRSVEAKEALRLQKENNFVILDVRPEAEFKEAHPPGAINVQIYRLIKEWTAWDIARRAAFAFFGIFSGTEENPEF  166 (240)
Q Consensus        87 l~~~~~~~Is~~el~~~l~~~~~~lIDvR~~~ey~~ghIpGAinip~~~l~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~  166 (240)
                      .....+..|+++|+.+++++ +++|||||++.||..||||||+|+|+.++.+..                          
T Consensus       483 ~~~~~~~~i~~~~~~~~~~~-~~~~iDvR~~~e~~~ghi~ga~~ip~~~l~~~~--------------------------  535 (588)
T 3ics_A          483 IVDGFVDTVQWHEIDRIVEN-GGYLIDVREPNELKQGMIKGSINIPLDELRDRL--------------------------  535 (588)
T ss_dssp             HHTTSCCEECTTTHHHHHHT-TCEEEECSCGGGGGGCBCTTEEECCHHHHTTCG--------------------------
T ss_pred             ccccccceecHHHHHHHhcC-CCEEEEcCCHHHHhcCCCCCCEECCHHHHHHHH--------------------------
Confidence            34577889999999999975 789999999999999999999999998775432                          


Q ss_pred             HHHHHhcCCCCCcEEEEcCCCCCCCCCCCCCCchhhHHHHHHHHHHHCCCCceEEccccHHHHHhCC
Q 026302          167 LQSVESQLDKDAKIIVACATGGTMKPSQNLPEGQQSRSLIAAYLLVLNGYKNVYHLEGGLYKWFKEE  233 (240)
Q Consensus       167 ~~~~~~~i~~~~~IVvyC~~G~~~~~~~~~~~~~~~rs~~aa~~L~~~G~~nV~~l~GG~~~W~~~g  233 (240)
                           ..++++++||+||.+|.              ||..+++.|+++||+ |++|+||+.+|.+..
T Consensus       536 -----~~l~~~~~iv~~C~~g~--------------rs~~a~~~l~~~G~~-v~~l~GG~~~w~~~~  582 (588)
T 3ics_A          536 -----EEVPVDKDIYITCQLGM--------------RGYVAARMLMEKGYK-VKNVDGGFKLYGTVL  582 (588)
T ss_dssp             -----GGSCSSSCEEEECSSSH--------------HHHHHHHHHHHTTCC-EEEETTHHHHHHHHC
T ss_pred             -----hhCCCCCeEEEECCCCc--------------HHHHHHHHHHHcCCc-EEEEcchHHHHHhhh
Confidence                 35789999999999997              999999999999998 999999999998764

>1okg_A Possible 3-mercaptopyruvate sulfurtransferase; rhodanese, prolyl isomerase, catalytic triad, serine protease, leishmania pyruvate; HET: CSR; 2.10A {Leishmania major} SCOP: c.46.1.2 c.46.1.2 d.26.1.3

Probab=99.70  E-value=5e-18  Score=155.84  Aligned_cols=102  Identities=18%  Similarity=0.198  Sum_probs=77.2

Q ss_pred             CCCeEEEEcCChhhhh-----------hCCCCCCeeechhhHH--hhhhHHHHHHHhhhhhcccCCCCCCcHHHHHHHHh
Q 026302          106 ENNFVILDVRPEAEFK-----------EAHPPGAINVQIYRLI--KEWTAWDIARRAAFAFFGIFSGTEENPEFLQSVES  172 (240)
Q Consensus       106 ~~~~~lIDvR~~~ey~-----------~ghIpGAinip~~~l~--~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~  172 (240)
                      .++++|||||++.||.           .||||||+|||+.++.  +..              +.   .-..++.+++...
T Consensus       172 ~~~~~lIDvR~~~Ef~G~~~~~~~~~~~GhIpGAiniP~~~l~~~~~~--------------~~---~~~~~~~l~~~~~  234 (373)
T 1okg_A          172 PPQAIITDARSADRFASTVRPYAADKMPGHIEGARNLPYTSHLVTRGD--------------GK---VLRSEEEIRHNIM  234 (373)
T ss_dssp             CTTCCEEECSCHHHHTCCSSCCTTCSSSSCSTTCEECCGGGGEECCSS--------------SC---EECCHHHHHHHHH
T ss_pred             ccCceEEeCCCHHHccccccccccCCcCccCCCcEEecHHHhhccCCC--------------CC---ccCCHHHHHHHHH
Confidence            4578999999999999           9999999999998764  210              00   0011222333223


Q ss_pred             ----cCCC---CCcEEEEcCCCCCCCCCCCCCCchhhHHHHHHHHHHHCCCCceEEccccHHHHHh-CCCCCcc
Q 026302          173 ----QLDK---DAKIIVACATGGTMKPSQNLPEGQQSRSLIAAYLLVLNGYKNVYHLEGGLYKWFK-EELPEVS  238 (240)
Q Consensus       173 ----~i~~---~~~IVvyC~~G~~~~~~~~~~~~~~~rs~~aa~~L~~~G~~nV~~l~GG~~~W~~-~g~pv~~  238 (240)
                          ++++   +++|||||.+|.              ||..++..|+.+||+||++|+|||.+|.. .|+|+++
T Consensus       235 ~~~~gi~~~~~d~~ivvyC~sG~--------------rs~~a~~~L~~~G~~~v~~~~GG~~~W~~~~~~pv~~  294 (373)
T 1okg_A          235 TVVQGAGDAADLSSFVFSCGSGV--------------TACINIALVHHLGLGHPYLYCGSWSEYSGLFRPPIMR  294 (373)
T ss_dssp             TTCC-----CCCTTSEEECSSSS--------------THHHHHHHHHHTTSCCCEECSSHHHHHHHHTHHHHHH
T ss_pred             hhhcCCCcccCCCCEEEECCchH--------------HHHHHHHHHHHcCCCCeeEeCChHHHHhcCCCCCccc
Confidence                3578   999999999998              99999999999999999999999999997 6888754

>3utn_X Thiosulfate sulfurtransferase TUM1; rhodanese-like domain; 1.90A {Saccharomyces cerevisiae}

Probab=99.69  E-value=3e-17  Score=148.41  Aligned_cols=115  Identities=26%  Similarity=0.393  Sum_probs=87.6

Q ss_pred             cccHHHHHHHhcCC----CeEEEEcCChhhhh-----------hCCCCCCeeechhhHHhhhhHHHHHHHhhhhhcccCC
Q 026302           94 SVEAKEALRLQKEN----NFVILDVRPEAEFK-----------EAHPPGAINVQIYRLIKEWTAWDIARRAAFAFFGIFS  158 (240)
Q Consensus        94 ~Is~~el~~~l~~~----~~~lIDvR~~~ey~-----------~ghIpGAinip~~~l~~~~~~~~~~~~~~~~~~g~~~  158 (240)
                      .++.+++.+.++++    +++|||+|++.+|.           .||||||+|+|+.++.+.-.             ..+.
T Consensus       185 v~~~~~v~~~v~~~~~~~~~~lvDaRs~~rf~G~~~ep~~~~r~GHIPGA~nlP~~~~ld~~~-------------~~~~  251 (327)
T 3utn_X          185 IVDYEEMFQLVKSGELAKKFNAFDARSLGRFEGTEPEPRSDIPSGHIPGTQPLPYGSLLDPET-------------KTYP  251 (327)
T ss_dssp             EECHHHHHHHHHTTCHHHHCEEEECSCHHHHHTSSCCSSSSCCCCBCTTEEECCGGGGSCTTT-------------CCCC
T ss_pred             eecHHHHhhhhhcccccccceeeccCccceecccccCccccccCCCCCCCcccChhhccCCCC-------------CCCC
Confidence            58889998888764    47899999999996           59999999999988764210             0011


Q ss_pred             CC-CCcHHHHHH----HHhcCCCCCcEEEEcCCCCCCCCCCCCCCchhhHHHHHHHHHHHCCCCceEEccccHHHHHhCC
Q 026302          159 GT-EENPEFLQS----VESQLDKDAKIIVACATGGTMKPSQNLPEGQQSRSLIAAYLLVLNGYKNVYHLEGGLYKWFKEE  233 (240)
Q Consensus       159 ~~-~~~~~~~~~----~~~~i~~~~~IVvyC~~G~~~~~~~~~~~~~~~rs~~aa~~L~~~G~~nV~~l~GG~~~W~~~g  233 (240)
                      .. +.....+++    ...+++++++||+||.+|.              +|+.++..|+.+||++|.+|+|+|.+|....
T Consensus       252 ~~~e~l~~~l~~~~~~~~~gid~~k~vI~yCgsGv--------------tA~~~~laL~~lG~~~v~lYdGSWsEW~~r~  317 (327)
T 3utn_X          252 EAGEAIHATLEKALKDFHCTLDPSKPTICSCGTGV--------------SGVIIKTALELAGVPNVRLYDGSWTEWVLKS  317 (327)
T ss_dssp             CTTHHHHHHHHHHHHHTTCCCCTTSCEEEECSSSH--------------HHHHHHHHHHHTTCCSEEEESSHHHHHHHHH
T ss_pred             CcHHHHHHHHHHHHHHhhcCCCCCCCEEEECChHH--------------HHHHHHHHHHHcCCCCceeCCCcHHHhcccc
Confidence            00 011112222    2236899999999999998              9999999999999999999999999998765


Q ss_pred             CC
Q 026302          234 LP  235 (240)
Q Consensus       234 ~p  235 (240)
                      .|
T Consensus       318 ~p  319 (327)
T 3utn_X          318 GP  319 (327)
T ss_dssp             CG
T ss_pred             CC
Confidence            54

>2eg4_A Probable thiosulfate sulfurtransferase; structural genomics, NPPSFA, national Pro protein structural and functional analyses; 1.70A {Thermus thermophilus} PDB: 2eg3_A

Probab=99.68  E-value=9.6e-17  Score=137.10  Aligned_cols=98  Identities=20%  Similarity=0.238  Sum_probs=71.9

Q ss_pred             CCeEEEEcCChhhhhhCCCCCCeeechh--hHHhhhhHHHHHHHhhhhhcccCCCCCCcHHHHHHHHhcCCCCCcEEEEc
Q 026302          107 NNFVILDVRPEAEFKEAHPPGAINVQIY--RLIKEWTAWDIARRAAFAFFGIFSGTEENPEFLQSVESQLDKDAKIIVAC  184 (240)
Q Consensus       107 ~~~~lIDvR~~~ey~~ghIpGAinip~~--~l~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~i~~~~~IVvyC  184 (240)
                      ++++|||||++.||..||||||+|+|+.  ++.... .           .++++    .++.+++....++.+++|||||
T Consensus         5 ~~~~iiDvR~~~ey~~ghIpgAi~ip~~~~~~~~~~-~-----------~~~~~----~~~~~~~~~~~l~~~~~ivvyc   68 (230)
T 2eg4_A            5 EDAVLVDTRPRPAYEAGHLPGARHLDLSAPKLRLRE-E-----------AELKA----LEGGLTELFQTLGLRSPVVLYD   68 (230)
T ss_dssp             TTCEEEECSCHHHHHHCBCTTCEECCCCSCCCCCCS-H-----------HHHHH----HHHHHHHHHHHTTCCSSEEEEC
T ss_pred             CCEEEEECCChhhHhhCcCCCCEECCccchhcccCC-C-----------CCcCC----CHHHHHHHHHhcCCCCEEEEEc
Confidence            4789999999999999999999999997  432100 0           00000    0122222223445589999999


Q ss_pred             CCCCCCCCCCCCCCchhhHHHHHHHHHHHCCCCceEEccccHHHHHhCCCCCccC
Q 026302          185 ATGGTMKPSQNLPEGQQSRSLIAAYLLVLNGYKNVYHLEGGLYKWFKEELPEVSE  239 (240)
Q Consensus       185 ~~G~~~~~~~~~~~~~~~rs~~aa~~L~~~G~~nV~~l~GG~~~W~~~g~pv~~~  239 (240)
                      .+|.             .+|.++++.|+ +||+||++|+||   |.+  +|++++
T Consensus        69 ~~g~-------------~~s~~a~~~L~-~G~~~v~~l~GG---W~~--~p~~~~  104 (230)
T 2eg4_A           69 EGLT-------------SRLCRTAFFLG-LGGLEVQLWTEG---WEP--YATEKE  104 (230)
T ss_dssp             SSSC-------------HHHHHHHHHHH-HTTCCEEEECSS---CGG--GCCBCS
T ss_pred             CCCC-------------ccHHHHHHHHH-cCCceEEEeCCC---Ccc--CcccCC
Confidence            9986             38999999999 999999999999   877  887654

>3r2u_A Metallo-beta-lactamase family protein; structural genomics, for structural genomics of infectious diseases, csgid, HYDR; 2.10A {Staphylococcus aureus}

Probab=99.66  E-value=6e-18  Score=159.13  Aligned_cols=87  Identities=29%  Similarity=0.361  Sum_probs=0.0

Q ss_pred             HHHHhcCCCeEEEEcCChhhhhhCCCCCCeeechhhHHhhhhHHHHHHHhhhhhcccCCCCCCcHHHHHHHHhcCCCCCc
Q 026302          100 ALRLQKENNFVILDVRPEAEFKEAHPPGAINVQIYRLIKEWTAWDIARRAAFAFFGIFSGTEENPEFLQSVESQLDKDAK  179 (240)
Q Consensus       100 l~~~l~~~~~~lIDvR~~~ey~~ghIpGAinip~~~l~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~i~~~~~  179 (240)
                      +.+++++++++|||||++.||..||||||+|+|+.++.+..                               ..++++++
T Consensus       379 ~~~~~~~~~~~liDvR~~~e~~~ghIpgA~~ip~~~l~~~~-------------------------------~~l~~~~~  427 (466)
T 3r2u_A          379 HSEDITGNESHILDVRNDNEWNNGHLSQAVHVPHGKLLETD-------------------------------LPFNKNDV  427 (466)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             HHHHHhCCCcEEEEeCCHHHHhcCcCCCCEECCHHHHHHHH-------------------------------hhCCCCCe
Confidence            45556666789999999999999999999999998765432                               34788999


Q ss_pred             EEEEcCCCCCCCCCCCCCCchhhHHHHHHHHHHHCCCCceEEccccHHHHHh
Q 026302          180 IIVACATGGTMKPSQNLPEGQQSRSLIAAYLLVLNGYKNVYHLEGGLYKWFK  231 (240)
Q Consensus       180 IVvyC~~G~~~~~~~~~~~~~~~rs~~aa~~L~~~G~~nV~~l~GG~~~W~~  231 (240)
                      ||+||.+|.              ||..++..|+.+||+||++|+|||.+|.+
T Consensus       428 iv~~C~~G~--------------rs~~a~~~L~~~G~~~v~~l~GG~~~W~~  465 (466)
T 3r2u_A          428 IYVHCQSGI--------------RSSIAIGILEHKGYHNIINVNEGYKDIQL  465 (466)
T ss_dssp             ----------------------------------------------------
T ss_pred             EEEECCCCh--------------HHHHHHHHHHHcCCCCEEEecChHHHHhh
Confidence            999999998              99999999999999999999999999975

>3tp9_A Beta-lactamase and rhodanese domain protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG; 2.70A {Alicyclobacillus acidocaldarius subsp}

Probab=99.63  E-value=2e-16  Score=148.50  Aligned_cols=103  Identities=17%  Similarity=0.133  Sum_probs=86.5

Q ss_pred             hcCccccHHHHHHHhcCCCeEEEEcCChhhhhhCCCCCCeeechhhHHhhhhHHHHHHHhhhhhcccCCCCCCcHHHHHH
Q 026302           90 KRVRSVEAKEALRLQKENNFVILDVRPEAEFKEAHPPGAINVQIYRLIKEWTAWDIARRAAFAFFGIFSGTEENPEFLQS  169 (240)
Q Consensus        90 ~~~~~Is~~el~~~l~~~~~~lIDvR~~~ey~~ghIpGAinip~~~l~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~  169 (240)
                      ..+..|+++|+.+++++ + +|||+|++.+|..||||||+|+|++....+                          .+..
T Consensus       270 ~~~~~is~~~l~~~l~~-~-~iiD~R~~~~y~~ghIpGA~~i~~~~~~~~--------------------------~~~~  321 (474)
T 3tp9_A          270 PERVDLPPERVRAWREG-G-VVLDVRPADAFAKRHLAGSLNIPWNKSFVT--------------------------WAGW  321 (474)
T ss_dssp             CEECCCCGGGHHHHHHT-S-EEEECSCHHHHHHSEETTCEECCSSTTHHH--------------------------HHHH
T ss_pred             CCCceeCHHHHHHHhCC-C-EEEECCChHHHhccCCCCeEEECcchHHHH--------------------------HHHh
Confidence            44678999999999988 5 999999999999999999999999753332                          2333


Q ss_pred             HHhcCCCCCcEEEEcCCCCCCCCCCCCCCchhhHHHHHHHHHHHCCCCceEEccccHHHHHhCCCCCcc
Q 026302          170 VESQLDKDAKIIVACATGGTMKPSQNLPEGQQSRSLIAAYLLVLNGYKNVYHLEGGLYKWFKEELPEVS  238 (240)
Q Consensus       170 ~~~~i~~~~~IVvyC~~G~~~~~~~~~~~~~~~rs~~aa~~L~~~G~~nV~~l~GG~~~W~~~g~pv~~  238 (240)
                      +   ++++++|||||..|.               +.++++.|+.+||++|+.|.+|+.+|..+|+|+..
T Consensus       322 l---~~~~~~vvvy~~~~~---------------~~~~~~~L~~~G~~~v~~~l~G~~~W~~~g~~~~~  372 (474)
T 3tp9_A          322 L---LPADRPIHLLAADAI---------------APDVIRALRSIGIDDVVDWTDPAAVDRAAPDDVAS  372 (474)
T ss_dssp             H---CCSSSCEEEECCTTT---------------HHHHHHHHHHTTCCCEEEEECGGGGTTCCGGGEEC
T ss_pred             c---CCCCCeEEEEECCCc---------------HHHHHHHHHHcCCcceEEecCcHHHHHhccccccc
Confidence            3   388999999999874               55699999999999999877799999999988754

>3r2u_A Metallo-beta-lactamase family protein; structural genomics, for structural genomics of infectious diseases, csgid, HYDR; 2.10A {Staphylococcus aureus}

Probab=99.30  E-value=2.5e-12  Score=120.81  Aligned_cols=80  Identities=19%  Similarity=0.137  Sum_probs=62.5

Q ss_pred             CCeEEEEcCChhhhhhCCCCCCeeechhhHHhhhhHHHHHHHhhhhhcccCCCCCCcHHHHHHHHhcCCCCCcEEEEcCC
Q 026302          107 NNFVILDVRPEAEFKEAHPPGAINVQIYRLIKEWTAWDIARRAAFAFFGIFSGTEENPEFLQSVESQLDKDAKIIVACAT  186 (240)
Q Consensus       107 ~~~~lIDvR~~~ey~~ghIpGAinip~~~l~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~i~~~~~IVvyC~~  186 (240)
                      ++++|||+|++.+|..||||||+|+|+......|                             +...++++++||+||. 
T Consensus       295 ~~~~ilD~R~~~~y~~gHIpGAv~ip~~~~~~~~-----------------------------~~~~~~~~~~vvly~~-  344 (466)
T 3r2u_A          295 TNRLTFDLRSKEAYHGGHIEGTINIPYDKNFINQ-----------------------------IGWYLNYDQEINLIGD-  344 (466)
T ss_dssp             CCSEEEECSCHHHHHHSCCTTCEECCSSTTHHHH-----------------------------HTTTCCTTSCEEEESC-
T ss_pred             CCeEEEECCCHHHHhhCCCCCcEECCccHHHHHH-----------------------------HHhccCCCCeEEEEEC-
Confidence            4789999999999999999999999987543332                             1123688999999999 


Q ss_pred             CCCCCCCCCCCCchhhHHHHHHHHHHHCCCCceEE-ccccHHHHH
Q 026302          187 GGTMKPSQNLPEGQQSRSLIAAYLLVLNGYKNVYH-LEGGLYKWF  230 (240)
Q Consensus       187 G~~~~~~~~~~~~~~~rs~~aa~~L~~~G~~nV~~-l~GG~~~W~  230 (240)
                      +.              ++.++++.|+.+||++|+. ++|+...|.
T Consensus       345 ~~--------------~a~~a~~~L~~~G~~~v~~~l~g~~~~~~  375 (466)
T 3r2u_A          345 YH--------------LVSKATHTLQLIGYDDIAGYQLPQSKIQT  375 (466)
T ss_dssp             HH--------------HHHHHHHHHHTTTCCCEEEEECCC-----
T ss_pred             Cc--------------hHHHHHHHhhhhhcccccccccCcccccH
Confidence            44              7999999999999999997 667655543

>2f46_A Hypothetical protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2, hydrolase; HET: MSE; 1.41A {Neisseria meningitidis Z2491}

Probab=97.55  E-value=5.6e-05  Score=60.28  Aligned_cols=71  Identities=17%  Similarity=0.221  Sum_probs=43.6

Q ss_pred             ccHHHHHHHhcCCCeEEEEcCChhh------------hhhC-CCCCCeeechhhHHhhhhHHHHHHHhhhhhcccCCCCC
Q 026302           95 VEAKEALRLQKENNFVILDVRPEAE------------FKEA-HPPGAINVQIYRLIKEWTAWDIARRAAFAFFGIFSGTE  161 (240)
Q Consensus        95 Is~~el~~~l~~~~~~lIDvR~~~e------------y~~g-hIpGAinip~~~l~~~~~~~~~~~~~~~~~~g~~~~~~  161 (240)
                      ++++++..+.+.+-..|||+|++.|            |..+ +|.|.+|+|+....  ...                  +
T Consensus        30 ~~~~d~~~L~~~Gi~~IIdlR~~~E~~~~p~~~~~~~~~~~~gi~~~~~iPv~~~~--~~~------------------~   89 (156)
T 2f46_A           30 LTKADAEQIAQLGIKTIICNRPDREEESQPDFAQIKQWLEQAGVTGFHHQPVTARD--IQK------------------H   89 (156)
T ss_dssp             CCGGGHHHHHHHTCCEEEECSCTTSSTTCCCHHHHHHHHGGGTCCEEEECCCCTTT--CCH------------------H
T ss_pred             CCHHHHHHHHHCCCCEEEECCCCccccCCCcHHHHHHHHHHCCCHhheECccCCCC--CCH------------------H
Confidence            4556666655544468999998765            3334 59999999986421  000                  0


Q ss_pred             CcHHHHHHHHhcCCCCCcEEEEcCCCC
Q 026302          162 ENPEFLQSVESQLDKDAKIIVACATGG  188 (240)
Q Consensus       162 ~~~~~~~~~~~~i~~~~~IVvyC~~G~  188 (240)
                      ...++.+.+.   ..+.+|+|||.+|.
T Consensus        90 ~~~~~~~~l~---~~~~pVlvHC~sG~  113 (156)
T 2f46_A           90 DVETFRQLIG---QAEYPVLAYCRTGT  113 (156)
T ss_dssp             HHHHHHHHHH---TSCSSEEEECSSSH
T ss_pred             HHHHHHHHHH---hCCCCEEEECCCCC
Confidence            0122333331   24789999999997

>1v8c_A MOAD related protein; riken structural genomics/proteomics initiative, RSGI, structural genomics, protein binding; 1.60A {Thermus thermophilus} SCOP: d.15.3.1 d.129.5.1

Probab=93.13  E-value=0.0066  Score=49.35  Aligned_cols=25  Identities=16%  Similarity=0.282  Sum_probs=22.1

Q ss_pred             eEEEEcCChhhhhhCCCCCCeeechhhHH
Q 026302          109 FVILDVRPEAEFKEAHPPGAINVQIYRLI  137 (240)
Q Consensus       109 ~~lIDvR~~~ey~~ghIpGAinip~~~l~  137 (240)
                      .++||||.+.||.    |||+|||...+.
T Consensus       122 ~~liDvRe~~E~~----pgA~~iprg~lE  146 (168)
T 1v8c_A          122 GAVVRFREVEPLK----VGSLSIPQLRVE  146 (168)
T ss_dssp             TEEEEEEEEEEEE----ETTEEEEEEEEE
T ss_pred             eEEEECCChhhcC----CCCEEcChhHHH
Confidence            4999999999999    999999986654

>4erc_A Dual specificity protein phosphatase 23; alpha beta, phosphatase(hydrolase), hydrolase; 1.15A {Homo sapiens} PDB: 2img_A

Probab=92.39  E-value=0.24  Score=37.74  Aligned_cols=73  Identities=15%  Similarity=0.154  Sum_probs=39.2

Q ss_pred             HHHHHHHhcCCCeEEEEcCChhhhhhCCCCCC--eeechhhHHhhhhHHHHHHHhhhhhcccCCCCCCcHHHHHHHHhcC
Q 026302           97 AKEALRLQKENNFVILDVRPEAEFKEAHPPGA--INVQIYRLIKEWTAWDIARRAAFAFFGIFSGTEENPEFLQSVESQL  174 (240)
Q Consensus        97 ~~el~~~l~~~~~~lIDvR~~~ey~~ghIpGA--inip~~~l~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~i  174 (240)
                      ++++..+.+.+=..|||+|+..|......+|-  +++|+.+....                   ......++++.+...+
T Consensus        25 ~~~~~~L~~~gi~~Vi~l~~~~~~~~~~~~~~~~~~~~~~d~~~~-------------------~~~~~~~~~~~i~~~~   85 (150)
T 4erc_A           25 PAHYQFLLDLGVRHLVSLTERGPPHSDSCPGLTLHRLRIPDFCPP-------------------APDQIDRFVQIVDEAN   85 (150)
T ss_dssp             HHHHHHHHHTTEEEEEECSSSCCTTGGGCTTSEEEECCCCTTSCC-------------------CHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHCCCCEEEEcCCCCCCcccccCCceEEEEecCCCCCC-------------------CHHHHHHHHHHHHHHH
Confidence            44454444444457999998766544444453  34554332100                   0001123333333334


Q ss_pred             CCCCcEEEEcCCCC
Q 026302          175 DKDAKIIVACATGG  188 (240)
Q Consensus       175 ~~~~~IVvyC~~G~  188 (240)
                      ..+.+|+|+|..|.
T Consensus        86 ~~~~~vlVHC~~G~   99 (150)
T 4erc_A           86 ARGEAVGVHCALGF   99 (150)
T ss_dssp             HTTCEEEEECSSSS
T ss_pred             HCCCCEEEECCCCC
Confidence            56789999999997

>2img_A Dual specificity protein phosphatase 23; DUSP23, VHZ, LDP-3, dual specicity protein phosphatase 23, DUS23_human, malate, structural genomics, PSI; 1.93A {Homo sapiens}

Probab=90.19  E-value=0.33  Score=36.86  Aligned_cols=73  Identities=15%  Similarity=0.151  Sum_probs=37.3

Q ss_pred             HHHHHHhcCCCeEEEEcCChhhhhhCCCCC--CeeechhhHHhhhhHHHHHHHhhhhhcccCCCCCCcHHHHHHHHhcCC
Q 026302           98 KEALRLQKENNFVILDVRPEAEFKEAHPPG--AINVQIYRLIKEWTAWDIARRAAFAFFGIFSGTEENPEFLQSVESQLD  175 (240)
Q Consensus        98 ~el~~~l~~~~~~lIDvR~~~ey~~ghIpG--Ainip~~~l~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~i~  175 (240)
                      +++..+.+.+=..|||+|+..|+....+++  -+++|+.+...                   +....+.++++.+.+.+.
T Consensus        27 ~~~~~l~~~gi~~Vv~l~~~~e~~~~~~~~~~~~~~~~~d~~~-------------------p~~~~~~~~~~~i~~~~~   87 (151)
T 2img_A           27 AHYQFLLDLGVRHLVSLTERGPPHSDSCPGLTLHRLRIPDFCP-------------------PAPDQIDRFVQIVDEANA   87 (151)
T ss_dssp             HHHHHHHHTTEEEEEECSSSCCTTGGGCTTSEEEECCCCTTCC-------------------CCHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHCCCCEEEECCCCCCCCHHHHhhCCeEEEeCCCCCC-------------------CCHHHHHHHHHHHHHHHh
Confidence            334444344335799999876654333333  34455432110                   000011233333333344


Q ss_pred             CCCcEEEEcCCCCC
Q 026302          176 KDAKIIVACATGGT  189 (240)
Q Consensus       176 ~~~~IVvyC~~G~~  189 (240)
                      .+.+|+|+|..|..
T Consensus        88 ~~~~vlVHC~aG~~  101 (151)
T 2img_A           88 RGEAVGVHCALGFG  101 (151)
T ss_dssp             TTCEEEEECSSSSS
T ss_pred             CCCcEEEECCCCCC
Confidence            67899999999973

>1ywf_A Phosphotyrosine protein phosphatase PTPB; four stranded parallel beta sheet with flanking helices, structural genomics, PSI; 1.71A {Mycobacterium tuberculosis} SCOP: c.45.1.5 PDB: 2oz5_A*

Probab=86.38  E-value=2.1  Score=37.21  Aligned_cols=44  Identities=14%  Similarity=0.168  Sum_probs=27.9

Q ss_pred             cCccccHHHHHHHhcCCCeEEEEcCChhhhhhC----CCCCC--eeechh
Q 026302           91 RVRSVEAKEALRLQKENNFVILDVRPEAEFKEA----HPPGA--INVQIY  134 (240)
Q Consensus        91 ~~~~Is~~el~~~l~~~~~~lIDvR~~~ey~~g----hIpGA--inip~~  134 (240)
                      .+..++.+++..+.+-+=..|||.|++.|....    .++|.  +++|+.
T Consensus        52 ~l~~lt~~d~~~L~~lGI~tVIDLR~~~E~~~~~pd~~~~Gi~~~~iPi~  101 (296)
T 1ywf_A           52 ELSRLDDAGRATLRRLGITDVADLRSSREVARRGPGRVPDGIDVHLLPFP  101 (296)
T ss_dssp             CCTTCCHHHHHHHHHHTCCEEEECCCHHHHHHHCSCCCCTTCEEEECCCC
T ss_pred             CcccCCHHHHHHHHhCCCCEEEECcChhhhhccCCCCCCCCCEEEEecCc
Confidence            344577777776655444689999998885422    34554  466654

>3ezz_A Dual specificity protein phosphatase 4; alpha/beta, hydrolase, nucleus; 2.90A {Homo sapiens} SCOP: c.45.1.1 PDB: 1m3g_A

Probab=81.33  E-value=2.2  Score=32.26  Aligned_cols=32  Identities=25%  Similarity=0.367  Sum_probs=21.9

Q ss_pred             cCCCCCcEEEEcCCCCCCCCCCCCCCchhhHHH--HHHHHHHHCCCC
Q 026302          173 QLDKDAKIIVACATGGTMKPSQNLPEGQQSRSL--IAAYLLVLNGYK  217 (240)
Q Consensus       173 ~i~~~~~IVvyC~~G~~~~~~~~~~~~~~~rs~--~aa~~L~~~G~~  217 (240)
                      ....+.+|+|+|..|..             |+.  .+++.+...|++
T Consensus        77 ~~~~~~~VlVHC~~G~~-------------RS~~~~~aylm~~~~~~  110 (144)
T 3ezz_A           77 VKDCRGRVLVHSQAGIS-------------RSATICLAYLMMKKRVR  110 (144)
T ss_dssp             HHHTTCCEEEEESSSSS-------------HHHHHHHHHHHHHHTCC
T ss_pred             HHhcCCeEEEECCCCCC-------------hhHHHHHHHHHHHcCCC
Confidence            34567899999999973             665  345555666763

>1fpz_A Cyclin-dependent kinase inhibitor 3; alpha-beta sandwich, hydrolase; 2.00A {Homo sapiens} SCOP: c.45.1.1 PDB: 1fq1_A*

Probab=81.20  E-value=2  Score=35.03  Aligned_cols=24  Identities=13%  Similarity=0.196  Sum_probs=16.1

Q ss_pred             HHHHHHhcCCCCCcEEEEcCCCCC
Q 026302          166 FLQSVESQLDKDAKIIVACATGGT  189 (240)
Q Consensus       166 ~~~~~~~~i~~~~~IVvyC~~G~~  189 (240)
                      +++.+...+..+.+|+|+|..|..
T Consensus       122 ~~~~i~~~~~~~~~VlVHC~aG~g  145 (212)
T 1fpz_A          122 IMEELTTCLKNYRKTLIHSYGGLG  145 (212)
T ss_dssp             HHHHHHHHHHTTCCEEEECSSSSS
T ss_pred             HHHHHHHHHhCCCCEEEECCCCCC
Confidence            333333334467899999999973

>1xri_A AT1G05000; structural genomics, protein structure initiative, CESG for eukaryotic structural genomics, phosphoprote phosphatase; 3.30A {Arabidopsis thaliana} SCOP: c.45.1.1 PDB: 2q47_A

Probab=80.27  E-value=2.8  Score=31.90  Aligned_cols=29  Identities=21%  Similarity=0.393  Sum_probs=20.6

Q ss_pred             CCCcEEEEcCCCCCCCCCCCCCCchhhHHHH-HHHHHHHCCCC
Q 026302          176 KDAKIIVACATGGTMKPSQNLPEGQQSRSLI-AAYLLVLNGYK  217 (240)
Q Consensus       176 ~~~~IVvyC~~G~~~~~~~~~~~~~~~rs~~-aa~~L~~~G~~  217 (240)
                      .+.+|+|+|..|..             |+.. ++..|...|++
T Consensus        91 ~~~~vlvHC~aG~~-------------RTg~~~a~~l~~~g~~  120 (151)
T 1xri_A           91 KNHPVLIHCKRGKH-------------RTGCLVGCLRKLQKWC  120 (151)
T ss_dssp             GGCSEEEECSSSSS-------------HHHHHHHHHHHHTTBC
T ss_pred             CCCCEEEECCCCCC-------------HHHHHHHHHHHHhCCC
Confidence            57899999999973             6554 44555667764

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	240
d1tq1a_	119	c.46.1.3 (A:) Thiosulfate sulfurtransferase/Senesc	1e-16
d1gmxa_	108	c.46.1.3 (A:) Sulfurtransferase GlpE {Escherichia	2e-13
d2gwfa1	135	c.46.1.4 (A:181-315) Ubiquitin carboxyl-terminal h	3e-12
d1hzma_	154	c.46.1.1 (A:) Erk2 binding domain of Mapk phosphat	9e-12
d1rhsa2	144	c.46.1.2 (A:150-293) Rhodanese {Cow (Bos taurus) [	8e-11
d1c25a_	161	c.46.1.1 (A:) CDC25a {Human (Homo sapiens) [TaxId:	1e-10
d1ymka1	174	c.46.1.1 (A:377-550) CDC25b {Human (Homo sapiens)	1e-10
d1e0ca2	136	c.46.1.2 (A:136-271) Sulfurtransferase {Azotobacte	2e-10
d1uara2	141	c.46.1.2 (A:145-285) Sulfurtransferase {Thermus th	3e-10
d1urha2	120	c.46.1.2 (A:149-268) 3-mercaptopyruvate sulfurtran	2e-09
d1qxna_	137	c.46.1.3 (A:) Polysulfide-sulfur transferase (sulf	1e-08
d1rhsa1	149	c.46.1.2 (A:1-149) Rhodanese {Cow (Bos taurus) [Ta	4e-08
d1okga2	139	c.46.1.2 (A:163-301) 3-mercaptopyruvate sulfurtran	6e-08
d1e0ca1	135	c.46.1.2 (A:1-135) Sulfurtransferase {Azotobacter	1e-07
d1yt8a2	101	c.46.1.2 (A:6-106) Thiosulfate sulfurtransferase P	3e-07
d1uara1	143	c.46.1.2 (A:2-144) Sulfurtransferase {Thermus ther	4e-07
d1t3ka_	132	c.46.1.1 (A:) Dual specificity phosphatase Cdc25 {	6e-07
d1yt8a1	136	c.46.1.2 (A:107-242) Thiosulfate sulfurtransferase	9e-07
d1yt8a4	130	c.46.1.2 (A:243-372) Thiosulfate sulfurtransferase	1e-06
d1okga1	156	c.46.1.2 (A:7-162) 3-mercaptopyruvate sulfurtransf	2e-05
d1yt8a3	157	c.46.1.2 (A:373-529) Thiosulfate sulfurtransferase	3e-05
d1urha1	147	c.46.1.2 (A:2-148) 3-mercaptopyruvate sulfurtransf	5e-05

>d1tq1a_ c.46.1.3 (A:) Thiosulfate sulfurtransferase/Senescence-associated protein {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} Length = 119

class: Alpha and beta proteins (a/b)
fold: Rhodanese/Cell cycle control phosphatase
superfamily: Rhodanese/Cell cycle control phosphatase
family: Single-domain sulfurtransferase
domain: Thiosulfate sulfurtransferase/Senescence-associated protein
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

 Score = 71.4 bits (174), Expect = 1e-16
 Identities = 39/149 (26%), Positives = 51/149 (34%), Gaps = 34/149 (22%)

Query: 90  KRVRSVEAKEALRLQKENNFVILDVRPEAEFKEAHPPGAINVQIYRLIKEWTAWDIARRA 149
           +   SV    A  L        LDVR   EF + H  GAINV          +       
Sbjct: 5   RVPSSVSVTVAHDLLLAG-HRYLDVRTPEEFSQGHACGAINVPYMNRGASGMSK------ 57

Query: 150 AFAFFGIFSGTEENPEFLQSVESQLDKDAKIIVACATGGTMKPSQNLPEGQQSRSLIAAY 209
                        N +FL+ V S   +   IIV C +GG              RS+ A  
Sbjct: 58  -------------NTDFLEQVSSHFGQSDNIIVGCQSGG--------------RSIKATT 90

Query: 210 LLVLNGYKNVYHLEGGLYKWFKEELPEVS 238
            L+  G+  V  + GG   W K  LP  +
Sbjct: 91  DLLHAGFTGVKDIVGGYSAWAKNGLPTKA 119

>d1gmxa_ c.46.1.3 (A:) Sulfurtransferase GlpE {Escherichia coli [TaxId: 562]} Length = 108

class: Alpha and beta proteins (a/b)
fold: Rhodanese/Cell cycle control phosphatase
superfamily: Rhodanese/Cell cycle control phosphatase
family: Single-domain sulfurtransferase
domain: Sulfurtransferase GlpE
species: Escherichia coli [TaxId: 562]

 Score = 62.1 bits (150), Expect = 2e-13
 Identities = 26/147 (17%), Positives = 44/147 (29%), Gaps = 46/147 (31%)

Query: 90  KRVRSVEAKEALRLQKENNFVILDVRPEAEFKEAHPPGAINVQIYRLIKEWTAWDIARRA 149
            +   +   +A +  +E   V++D+R    F   H   A ++    L       D     
Sbjct: 2   DQFECINVADAHQKLQEKEAVLVDIRDPQSFAMGHAVQAFHLTNDTLGAFMRDND----- 56

Query: 150 AFAFFGIFSGTEENPEFLQSVESQLDKDAKIIVACATGGTMKPSQNLPEGQQSRSLIAAY 209
                                      D  ++V C  G              + S  AA 
Sbjct: 57  --------------------------FDTPVMVMCYHG--------------NSSKGAAQ 76

Query: 210 LLVLNGYKNVYHLEGGLYKWFKEELPE 236
            L+  GY  VY ++GG   W + + P 
Sbjct: 77  YLLQQGYDVVYSIDGGFEAW-QRQFPA 102

>d2gwfa1 c.46.1.4 (A:181-315) Ubiquitin carboxyl-terminal hydrolase 8, USP8 {Human (Homo sapiens) [TaxId: 9606]} Length = 135

class: Alpha and beta proteins (a/b)
fold: Rhodanese/Cell cycle control phosphatase
superfamily: Rhodanese/Cell cycle control phosphatase
family: Ubiquitin carboxyl-terminal hydrolase 8, USP8
domain: Ubiquitin carboxyl-terminal hydrolase 8, USP8
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 60.3 bits (145), Expect = 3e-12
 Identities = 17/141 (12%), Positives = 39/141 (27%), Gaps = 17/141 (12%)

Query: 94  SVEAKEALRLQKENN--FVILDVRPEAEFKEAHPPGAINVQIYRLIKEWTAWDIARRAAF 151
           ++ AKE   +  + N   +I+D R   +++++    +++V    +    TA  I      
Sbjct: 2   AITAKELYTMMTDKNISLIIMDARRMQDYQDSCILHSLSVPEEAISPGVTASWIEAHLPD 61

Query: 152 AFFGIFSGTEENPEFLQSVESQLDKDAKIIVACATGGTMKPSQNLPEGQQSRSLIAAYLL 211
                +               +      +++                     +L      
Sbjct: 62  DSKDTW--------------KKRGNVEYVVLLDWFSSAKDLQIGTTLRSLKDALFKWESK 107

Query: 212 VLNGYKNVYHLEGGLYKWFKE 232
            +        LEGG   W   
Sbjct: 108 TV-LRNEPLVLEGGYENWLLC 127

>d1hzma_ c.46.1.1 (A:) Erk2 binding domain of Mapk phosphatase mkp-3 {Human (Homo sapiens) [TaxId: 9606]} Length = 154

class: Alpha and beta proteins (a/b)
fold: Rhodanese/Cell cycle control phosphatase
superfamily: Rhodanese/Cell cycle control phosphatase
family: Cell cycle control phosphatase, catalytic domain
domain: Erk2 binding domain of Mapk phosphatase mkp-3
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 59.1 bits (142), Expect = 9e-12
 Identities = 24/144 (16%), Positives = 47/144 (32%), Gaps = 17/144 (11%)

Query: 96  EAKEALRLQKENNFVILDVRPEAEFKEAHPPGAINVQIYRLIKEWTAWDIARRAAFAFFG 155
              E L L  E   +++D RP+  ++ +H   AINV I  ++            A     
Sbjct: 22  WLNEQLELGNER-LLLMDCRPQELYESSHIESAINVAIPGIMLRRLQKGNLPVRALF--- 77

Query: 156 IFSGTEENPEFLQSVESQLDKDAKIIVACATGGTMKPSQNLPEGQQSRSLIAAYLLVLNG 215
                       +   ++      +++   +      +       +S   +    L   G
Sbjct: 78  -------TRGEDRDRFTRRCGTDTVVLYDESSSDWNENTG----GESLLGLLLKKLKDEG 126

Query: 216 YKNVYHLEGGLYKWFKEELPEVSE 239
               ++LEGG +  F+ E     E
Sbjct: 127 C-RAFYLEGG-FSKFQAEFSLHCE 148

>d1rhsa2 c.46.1.2 (A:150-293) Rhodanese {Cow (Bos taurus) [TaxId: 9913]} Length = 144

class: Alpha and beta proteins (a/b)
fold: Rhodanese/Cell cycle control phosphatase
superfamily: Rhodanese/Cell cycle control phosphatase
family: Multidomain sulfurtransferase (rhodanese)
domain: Rhodanese
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 56.4 bits (135), Expect = 8e-11
 Identities = 23/144 (15%), Positives = 43/144 (29%), Gaps = 22/144 (15%)

Query: 95  VEAKEALRLQKENNFVILDVRPEAEFKEAHPPGAINVQIYRLIKEWTAWDIARRAAFAFF 154
              ++ L   +   F ++D R +  +    P           I+               F
Sbjct: 13  KTYEQVLENLESKRFQLVDSRAQGRYLGTQPEPDAVGLDSGHIRGSVNMPFMNFLTEDGF 72

Query: 155 GIFSGTEENPEFLQSV--ESQLDKDAKIIVACATGGTMKPSQNLPEGQQSRSLIAAYLLV 212
                   +PE L+++    ++D    +I  C  G                +   A    
Sbjct: 73  EK------SPEELRAMFEAKKVDLTKPLIATCRKGV--------------TACHIALAAY 112

Query: 213 LNGYKNVYHLEGGLYKWFKEELPE 236
           L G  +V   +G  ++WF    PE
Sbjct: 113 LCGKPDVAIYDGSWFEWFHRAPPE 136

>d1c25a_ c.46.1.1 (A:) CDC25a {Human (Homo sapiens) [TaxId: 9606]} Length = 161

class: Alpha and beta proteins (a/b)
fold: Rhodanese/Cell cycle control phosphatase
superfamily: Rhodanese/Cell cycle control phosphatase
family: Cell cycle control phosphatase, catalytic domain
domain: CDC25a
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 56.3 bits (135), Expect = 1e-10
 Identities = 20/155 (12%), Positives = 48/155 (30%), Gaps = 43/155 (27%)

Query: 89  QKRVRSVEAKEALRL------QKENNFVILDVRPEAEFKEAHPPGAINVQIYRLIKEWTA 142
            + ++ +  +    +           FVI+D R   E++  H  GA+N+ +   ++++  
Sbjct: 19  HQDLKYISPEIMASVLNGKFANLIKEFVIIDCRYPYEYEGGHIKGAVNLHMEEEVEDF-- 76

Query: 143 WDIARRAAFAFFGIFSGTEENPEFLQSVESQLDKDAKIIVACATGGTMKPSQNLPEGQQS 202
                                    + +     K   ++  C              G + 
Sbjct: 77  ----------------------LLKKPIVPTDGKRVIVVFHCEFSSE--------RGPRM 106

Query: 203 RSLIAAYLLVLN-----GYKNVYHLEGGLYKWFKE 232
              +     + N      Y  +Y L+GG  ++F +
Sbjct: 107 CRYVRERDRLGNEYPKLHYPELYVLKGGYKEFFMK 141

>d1ymka1 c.46.1.1 (A:377-550) CDC25b {Human (Homo sapiens) [TaxId: 9606]} Length = 174

class: Alpha and beta proteins (a/b)
fold: Rhodanese/Cell cycle control phosphatase
superfamily: Rhodanese/Cell cycle control phosphatase
family: Cell cycle control phosphatase, catalytic domain
domain: CDC25b
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 56.4 bits (135), Expect = 1e-10
 Identities = 29/154 (18%), Positives = 49/154 (31%), Gaps = 33/154 (21%)

Query: 92  VRSVEAKEALRLQKE------NNFVILDVRPEAEFKEAHPPGAINVQIYRLIKEWTAWDI 145
           ++ +  +  + L         + FVI+D R   E++  H   A+N+ + R          
Sbjct: 22  LKYISPETMVALLTGKFSNIVDKFVIVDCRYPYEYEGGHIKTAVNLPLERDA-------- 73

Query: 146 ARRAAFAFFGIFSGTEENPEFLQSVESQLDKDAKIIVACATGGTMKPSQNLPEGQQSRSL 205
                          E            LDK   +I  C       P       ++ R++
Sbjct: 74  ---------------ESFLLKSPIAPCSLDKRVILIFHCEFSSERGPRMCRFIRERDRAV 118

Query: 206 IAAYLLVLNGYKNVYHLEGGLYKWFKEELPEVSE 239
                     Y  +Y L+GG YK F  + P   E
Sbjct: 119 ---NDYPSLYYPEMYILKGG-YKEFFPQHPNFCE 148

>d1e0ca2 c.46.1.2 (A:136-271) Sulfurtransferase {Azotobacter vinelandii [TaxId: 354]} Length = 136

class: Alpha and beta proteins (a/b)
fold: Rhodanese/Cell cycle control phosphatase
superfamily: Rhodanese/Cell cycle control phosphatase
family: Multidomain sulfurtransferase (rhodanese)
domain: Sulfurtransferase
species: Azotobacter vinelandii [TaxId: 354]

 Score = 54.9 bits (131), Expect = 2e-10
 Identities = 23/145 (15%), Positives = 36/145 (24%), Gaps = 24/145 (16%)

Query: 95  VEAKEALRLQKENNFVILDVRPEAEFKEAHPPGAINVQIYRLIKEWTAWDIARRAAFAFF 154
                 L      +  I D R   E++      A    I   +       +    A    
Sbjct: 14  ASRDYLLGRLGAADLAIWDARSPQEYRGEKVLAAKGGHIPGAVNFEWTAAMDPSRALRIR 73

Query: 155 GIFSGTEENPEFLQSVESQLDKDAKIIVACATGGTMKPSQNLPEGQQSRSLIAAYLLVLN 214
              +G  E              D +I+  C T                RS +   +    
Sbjct: 74  TDIAGRLEELGI--------TPDKEIVTHCQTHH--------------RSGLTYLIAKAL 111

Query: 215 GYKNVYHLEGGLYKWFK-EELP-EV 237
           GY  V    G   +W    + P E+
Sbjct: 112 GYPRVKGYAGSWGEWGNHPDTPVEL 136

>d1uara2 c.46.1.2 (A:145-285) Sulfurtransferase {Thermus thermophilus [TaxId: 274]} Length = 141

class: Alpha and beta proteins (a/b)
fold: Rhodanese/Cell cycle control phosphatase
superfamily: Rhodanese/Cell cycle control phosphatase
family: Multidomain sulfurtransferase (rhodanese)
domain: Sulfurtransferase
species: Thermus thermophilus [TaxId: 274]

 Score = 54.5 bits (130), Expect = 3e-10
 Identities = 34/154 (22%), Positives = 50/154 (32%), Gaps = 19/154 (12%)

Query: 91  RVRSVEAKEALRLQKENNFVILDVRPEAEF--KEAHPPGAINVQIYRLIKEWTAWDIARR 148
           R    +  E +   KE    ++DVR   E+  +  H P        R      A +I   
Sbjct: 3   RAYRDDVLEHIIKVKEGKGALVDVRSPQEYRGELTHMPDYPQEGALRAGHIPGAKNIPWA 62

Query: 149 AAFAFFGIFSGTEENPEFLQSVESQLDKDAKIIVACATGGTMKPSQNLPEGQQSRSLIAA 208
            A    G F   EE     + +   + KD  I+V C                   S    
Sbjct: 63  KAVNPDGTFKSAEELRALYEPL--GITKDKDIVVYCRIAERS-------------SHSWF 107

Query: 209 YLLVLNGYKNVYHLEGGLYKWFK-EELP-EVSEE 240
            L  L GY +V + +G   +W     +P    EE
Sbjct: 108 VLKYLLGYPHVKNYDGSWTEWGNLVGVPIAKGEE 141

>d1urha2 c.46.1.2 (A:149-268) 3-mercaptopyruvate sulfurtransferase {Escherichia coli [TaxId: 562]} Length = 120

class: Alpha and beta proteins (a/b)
fold: Rhodanese/Cell cycle control phosphatase
superfamily: Rhodanese/Cell cycle control phosphatase
family: Multidomain sulfurtransferase (rhodanese)
domain: 3-mercaptopyruvate sulfurtransferase
species: Escherichia coli [TaxId: 562]

 Score = 51.9 bits (123), Expect = 2e-09
 Identities = 24/135 (17%), Positives = 41/135 (30%), Gaps = 20/135 (14%)

Query: 95  VEAKEALRLQKENNFVILDVRPEAEFKEAHPPGAINVQIYRLIKEWTAWDIARRAAFAFF 154
           V+  + L    EN   I+D RP A F          ++   +     A ++         
Sbjct: 6   VKVTDVLLASHENTAQIIDARPAARFNAEVDEPRPGLRRGHI---PGALNVPWTELVREG 62

Query: 155 GIFSGTEENPEFLQSVESQLDKDAKIIVACATGGTMKPSQNLPEGQQSRSLIAAYLLVLN 214
            + +  E +  F       +  D  IIV+C              G    + +    L   
Sbjct: 63  ELKTTDELDAIFFG---RGVSYDKPIIVSC--------------GSGVTAAVVLLALATL 105

Query: 215 GYKNVYHLEGGLYKW 229
              NV   +G   +W
Sbjct: 106 DVPNVKLYDGAWSEW 120

>d1qxna_ c.46.1.3 (A:) Polysulfide-sulfur transferase (sulfide dehydrogenase, Sud) {Wolinella succinogenes [TaxId: 844]} Length = 137

class: Alpha and beta proteins (a/b)
fold: Rhodanese/Cell cycle control phosphatase
superfamily: Rhodanese/Cell cycle control phosphatase
family: Single-domain sulfurtransferase
domain: Polysulfide-sulfur transferase (sulfide dehydrogenase, Sud)
species: Wolinella succinogenes [TaxId: 844]

 Score = 50.2 bits (119), Expect = 1e-08
 Identities = 33/153 (21%), Positives = 55/153 (35%), Gaps = 41/153 (26%)

Query: 89  QKRVRSVEAKEALRLQKEN-NFVILDVRPEAEFKEAHPPGAINVQIYRLIKEWTAWDIAR 147
           +  +  +  K+A +L +EN +  ++DVR   E K    P   N +     K         
Sbjct: 19  KADMVMLSPKDAYKLLQENPDITLIDVRDPDELKAMGKPDVKNYKHMSRGKLEPLLAK-- 76

Query: 148 RAAFAFFGIFSGTEENPEFLQSVESQLDKDAKIIVACATGGTMKPSQNLPEGQQSRSLIA 207
                                   S LD +  ++V C T               +R+ +A
Sbjct: 77  ------------------------SGLDPEKPVVVFCKT--------------AARAALA 98

Query: 208 AYLLVLNGYKNVYHLEGGLYKWFKEELPEVSEE 240
              L   G+K +Y+ EGG+ KW +E LP +   
Sbjct: 99  GKTLREYGFKTIYNSEGGMDKWLEEGLPSLDRS 131

>d1rhsa1 c.46.1.2 (A:1-149) Rhodanese {Cow (Bos taurus) [TaxId: 9913]} Length = 149

class: Alpha and beta proteins (a/b)
fold: Rhodanese/Cell cycle control phosphatase
superfamily: Rhodanese/Cell cycle control phosphatase
family: Multidomain sulfurtransferase (rhodanese)
domain: Rhodanese
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 49.1 bits (116), Expect = 4e-08
 Identities = 25/154 (16%), Positives = 45/154 (29%), Gaps = 32/154 (20%)

Query: 96  EAKEALRLQKEN-NFVILDVR--------PEAEFKEAHPPGAINVQIYRLIKEWTAWDIA 146
              E++R  K      +LD             E+ E H PGA    I     + + +++ 
Sbjct: 14  WLAESVRAGKVGPGLRVLDASWYSPGTREARKEYLERHVPGASFFDIEECRDKASPYEVM 73

Query: 147 RRAAFAFFGIFSGTEENPEFLQSVESQLDKDAKIIVACATGGTMKPSQNLPEGQQSRSLI 206
             +   F         +                ++      G+    +            
Sbjct: 74  LPSEAGFADYVGSLGISN-----------DTHVVVYDGDDLGSFYAPRV----------- 111

Query: 207 AAYLLVLNGYKNVYHLEGGLYKWFKEELPEVSEE 240
             ++  + G++ V  L GG   W KE  P  SE 
Sbjct: 112 -WWMFRVFGHRTVSVLNGGFRNWLKEGHPVTSEP 144

>d1okga2 c.46.1.2 (A:163-301) 3-mercaptopyruvate sulfurtransferase {Leishmania major [TaxId: 5664]} Length = 139

class: Alpha and beta proteins (a/b)
fold: Rhodanese/Cell cycle control phosphatase
superfamily: Rhodanese/Cell cycle control phosphatase
family: Multidomain sulfurtransferase (rhodanese)
domain: 3-mercaptopyruvate sulfurtransferase
species: Leishmania major [TaxId: 5664]

 Score = 48.3 bits (114), Expect = 6e-08
 Identities = 17/133 (12%), Positives = 31/133 (23%), Gaps = 33/133 (24%)

Query: 108 NFVILDVRPEAEF-----------KEAHPPGAINVQIYRLIKEWTAWDIARRAAFAFFGI 156
             +I D R    F              H  GA N+     +       + R         
Sbjct: 12  QAIITDARSADRFASTVRPYAADKMPGHIEGARNLPYTSHLVTRGDGKVLRSEEEIRH-- 69

Query: 157 FSGTEENPEFLQSVESQLDKDAKIIVACATGGTMKPSQNLPEGQQSRSLIAAYLLVLNGY 216
                 N   +          +  + +C +G                + I   L+   G 
Sbjct: 70  ------NIMTVVQGAGDAADLSSFVFSCGSG--------------VTACINIALVHHLGL 109

Query: 217 KNVYHLEGGLYKW 229
            + Y   G   ++
Sbjct: 110 GHPYLYCGSWSEY 122

>d1e0ca1 c.46.1.2 (A:1-135) Sulfurtransferase {Azotobacter vinelandii [TaxId: 354]} Length = 135

class: Alpha and beta proteins (a/b)
fold: Rhodanese/Cell cycle control phosphatase
superfamily: Rhodanese/Cell cycle control phosphatase
family: Multidomain sulfurtransferase (rhodanese)
domain: Sulfurtransferase
species: Azotobacter vinelandii [TaxId: 354]

 Score = 47.0 bits (110), Expect = 1e-07
 Identities = 24/146 (16%), Positives = 40/146 (27%), Gaps = 25/146 (17%)

Query: 95  VEAKEALRLQKENNFVILDVRPEAEFKEAHPPGAINVQIYRLIKEWTAWDIARRAAFAFF 154
           +E  +          +++D+   A + E H PGA  V   R           +       
Sbjct: 11  IEPADLQARLSAPELILVDLTSAARYAEGHIPGARFVDPKRTQLGQPPAPGLQP------ 64

Query: 155 GIFSGTEENPEFLQSVESQLDKDAKIIVACATGGTMKPSQNLPEGQQSRSLIAAYLLVLN 214
                  E  E L        +   ++     GG       L +                
Sbjct: 65  -----PREQLESLFGELGHRPEAVYVVYDDEGGGWAGRFIWLLDVIG------------- 106

Query: 215 GYKNVYHLEGGLYKWFKEELPEVSEE 240
             +  ++L GGL  W  E+ P   E 
Sbjct: 107 -QQRYHYLNGGLTAWLAEDRPLSREL 131

>d1yt8a2 c.46.1.2 (A:6-106) Thiosulfate sulfurtransferase PA2603 {Pseudomonas aeruginosa [TaxId: 287]} Length = 101

class: Alpha and beta proteins (a/b)
fold: Rhodanese/Cell cycle control phosphatase
superfamily: Rhodanese/Cell cycle control phosphatase
family: Multidomain sulfurtransferase (rhodanese)
domain: Thiosulfate sulfurtransferase PA2603
species: Pseudomonas aeruginosa [TaxId: 287]

 Score = 45.4 bits (106), Expect = 3e-07
 Identities = 33/141 (23%), Positives = 44/141 (31%), Gaps = 44/141 (31%)

Query: 92  VRSVEAKEALRLQKENNFVILDVRPEAEFKEAHPPGAINVQIYRLIKEWTAWDIARRAAF 151
           VR+     A  L       +LDVR E  F +AHP  A N+ + RL  E  A         
Sbjct: 3   VRTFHDIRA-ALLARRELALLDVREEDPFAQAHPLFAANLPLSRLELEIHARVP------ 55

Query: 152 AFFGIFSGTEENPEFLQSVESQLDKDAKIIVACATGGTMKPSQNLPEGQQSRSLIAAYLL 211
                                   +D  I V                  +  + +AA  L
Sbjct: 56  -----------------------RRDTPITVYD--------------DGEGLAPVAAQRL 78

Query: 212 VLNGYKNVYHLEGGLYKWFKE 232
              GY +V  L+GGL  W   
Sbjct: 79  HDLGYSDVALLDGGLSGWRNA 99

>d1uara1 c.46.1.2 (A:2-144) Sulfurtransferase {Thermus thermophilus [TaxId: 274]} Length = 143

class: Alpha and beta proteins (a/b)
fold: Rhodanese/Cell cycle control phosphatase
superfamily: Rhodanese/Cell cycle control phosphatase
family: Multidomain sulfurtransferase (rhodanese)
domain: Sulfurtransferase
species: Thermus thermophilus [TaxId: 274]

 Score = 46.0 bits (108), Expect = 4e-07
 Identities = 23/147 (15%), Positives = 40/147 (27%), Gaps = 28/147 (19%)

Query: 95  VEAKEALRLQKENNFVILDVR-PEAEFKEAHPPGAINVQIYRLIKEWTAWDIARRAAFAF 153
           V         ++    +L+V      +   H PGA  +   R   +    D      FA 
Sbjct: 9   VSTDWVQEHLEDPKVRVLEVDEDILLYDTGHIPGAQKIDWQRDFWDPVVRDFISEEEFAK 68

Query: 154 FGIFSGTEENPEFLQSVESQLDKDAKIIVACATGGTMKPSQNLPEGQQSRSLIAAYLLVL 213
                               +  D  +++                          +    
Sbjct: 69  LMERL--------------GISNDTTVVLYGDKNNWWAAYAF-------------WFFKY 101

Query: 214 NGYKNVYHLEGGLYKWFKEELPEVSEE 240
           NG+K+V  + GG  KW +E  P  +E 
Sbjct: 102 NGHKDVRLMNGGRQKWVEEGRPLTTEV 128

>d1t3ka_ c.46.1.1 (A:) Dual specificity phosphatase Cdc25 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} Length = 132

class: Alpha and beta proteins (a/b)
fold: Rhodanese/Cell cycle control phosphatase
superfamily: Rhodanese/Cell cycle control phosphatase
family: Cell cycle control phosphatase, catalytic domain
domain: Dual specificity phosphatase Cdc25
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

 Score = 45.1 bits (105), Expect = 6e-07
 Identities = 20/148 (13%), Positives = 40/148 (27%), Gaps = 32/148 (21%)

Query: 88  LQKRVRSVEAKEALRLQKENNFVILDVRPEAEFKEAHPPGAINVQIYRLIKEWTAWDIAR 147
           + + +  + + + L L +  N  I+DVR E    + H  G+++        + +      
Sbjct: 3   MARSISYITSTQLLPLHRRPNIAIIDVRDEERNYDGHIAGSLHYASGSFDDKISHLVQ-- 60

Query: 148 RAAFAFFGIFSGTEENPEFLQSVESQLDKDAKIIVACATGGTMKPSQNLPEGQQSRSLIA 207
                                     +     ++   A      P+       +      
Sbjct: 61  -------------------------NVKDKDTLVFHSALSQVRGPTC-----ARRLVNYL 90

Query: 208 AYLLVLNGYKNVYHLEGGLYKWFKEELP 235
                  G KN+  LE G   W     P
Sbjct: 91  DEKKEDTGIKNIMILERGFNGWEASGKP 118

>d1yt8a1 c.46.1.2 (A:107-242) Thiosulfate sulfurtransferase PA2603 {Pseudomonas aeruginosa [TaxId: 287]} Length = 136

class: Alpha and beta proteins (a/b)
fold: Rhodanese/Cell cycle control phosphatase
superfamily: Rhodanese/Cell cycle control phosphatase
family: Multidomain sulfurtransferase (rhodanese)
domain: Thiosulfate sulfurtransferase PA2603
species: Pseudomonas aeruginosa [TaxId: 287]

 Score = 44.9 bits (105), Expect = 9e-07
 Identities = 30/157 (19%), Positives = 40/157 (25%), Gaps = 44/157 (28%)

Query: 81  KTKRELLLQKR-VRSVEAKEAL-RLQKENNFVILDVRPEAEFKEAHPPGAINVQIYRLIK 138
           K   EL+  +R   S+ A+E    L      VILD R   E++    PG I+V    L+ 
Sbjct: 11  KAFGELVEAERHTPSLAAEEVQALLDARAEAVILDARRFDEYQTMSIPGGISVPGAELVL 70

Query: 139 EWTAWDIARRAAFAFFGIFSGTEENPEFLQSVESQLDKDAKIIVACATGGTMKPSQNLPE 198
                                               D   ++IV CA             
Sbjct: 71  RVAELAP-----------------------------DPRTRVIVNCAGRTRSII------ 95

Query: 199 GQQSRSLIAAYLLVLNGYKNVYHLEGGLYKWFKEELP 235
                      LL       V  L  G   W      
Sbjct: 96  -------GTQSLLNAGIPNPVAALRNGTIGWTLAGQQ 125

>d1yt8a4 c.46.1.2 (A:243-372) Thiosulfate sulfurtransferase PA2603 {Pseudomonas aeruginosa [TaxId: 287]} Length = 130

class: Alpha and beta proteins (a/b)
fold: Rhodanese/Cell cycle control phosphatase
superfamily: Rhodanese/Cell cycle control phosphatase
family: Multidomain sulfurtransferase (rhodanese)
domain: Thiosulfate sulfurtransferase PA2603
species: Pseudomonas aeruginosa [TaxId: 287]

 Score = 44.2 bits (103), Expect = 1e-06
 Identities = 25/151 (16%), Positives = 49/151 (32%), Gaps = 46/151 (30%)

Query: 84  RELLLQKRVRSVEAKEALRLQKEN--NFVILDVRPEAEFKEAHPPGAINVQIYRLIKEWT 141
           R +  +  V  ++     + Q E+     +LDVR   E++  H PG+ +    +L++E  
Sbjct: 14  RAVADRAGVERLDLAGLAQWQDEHDRTTYLLDVRTPEEYEAGHLPGSRSTPGGQLVQETD 73

Query: 142 AWDIARRAAFAFFGIFSGTEENPEFLQSVESQLDKDAKIIVACATGGTMKPSQNLPEGQQ 201
                                             + A++++    G              
Sbjct: 74  HVAS-----------------------------VRGARLVLVDDDGV------------- 91

Query: 202 SRSLIAAYLLVLNGYKNVYHLEGGLYKWFKE 232
            R+ ++A  L   G+  V  L+G     F E
Sbjct: 92  -RANMSASWLAQMGW-QVAVLDGLSEADFSE 120

>d1okga1 c.46.1.2 (A:7-162) 3-mercaptopyruvate sulfurtransferase {Leishmania major [TaxId: 5664]} Length = 156

class: Alpha and beta proteins (a/b)
fold: Rhodanese/Cell cycle control phosphatase
superfamily: Rhodanese/Cell cycle control phosphatase
family: Multidomain sulfurtransferase (rhodanese)
domain: 3-mercaptopyruvate sulfurtransferase
species: Leishmania major [TaxId: 5664]

 Score = 41.2 bits (96), Expect = 2e-05
 Identities = 19/142 (13%), Positives = 33/142 (23%), Gaps = 30/142 (21%)

Query: 107 NNFVILDVR--------PEAEFKEAHPPGAINVQIYRLIKEWTAWDIARRAAFAFFGIFS 158
             + I+D R           ++ + H   AI   +   + +      AR           
Sbjct: 20  AEYRIVDCRYSLKIKDHGSIQYAKEHVKSAIRADVDTNLSKLVPTSTARHPL-------- 71

Query: 159 GTEENPEFLQSVESQLDKDAKIIVACATGGTMKPSQNLPEGQQSRSLIAAYLLVLNGYKN 218
                               ++ V C                  R     ++L   G  +
Sbjct: 72  ---PPCAEFIDWCMANGMAGELPVLCYDDECGAMGG-------CR---LWWMLNSLGA-D 117

Query: 219 VYHLEGGLYKWFKEELPEVSEE 240
            Y + GG        L   S E
Sbjct: 118 AYVINGGFQACKAAGLEMESGE 139

>d1yt8a3 c.46.1.2 (A:373-529) Thiosulfate sulfurtransferase PA2603 {Pseudomonas aeruginosa [TaxId: 287]} Length = 157

class: Alpha and beta proteins (a/b)
fold: Rhodanese/Cell cycle control phosphatase
superfamily: Rhodanese/Cell cycle control phosphatase
family: Multidomain sulfurtransferase (rhodanese)
domain: Thiosulfate sulfurtransferase PA2603
species: Pseudomonas aeruginosa [TaxId: 287]

 Score = 41.1 bits (95), Expect = 3e-05
 Identities = 22/147 (14%), Positives = 38/147 (25%), Gaps = 45/147 (30%)

Query: 89  QKRVRSVEAKEALRLQKENNFVILDVRPEAEFKEAHPPGAINVQIYRLIKEWTAWDIARR 148
           Q R  +++         E    +LD    A + + H PGA  V   +L +          
Sbjct: 1   QPRADTIDPTTLADWLGEPGTRVLDFTASANYAKRHIPGAAWVLRSQLKQALERL----- 55

Query: 149 AAFAFFGIFSGTEENPEFLQSVESQLDKDAKIIVACATGGTMKPSQNLPEGQQSRSLIAA 208
                                         + ++ C +                 +  A 
Sbjct: 56  --------------------------GTAERYVLTCGSSL--------------LARFAV 75

Query: 209 YLLVLNGYKNVYHLEGGLYKWFKEELP 235
             +     K V+ L+GG   W    LP
Sbjct: 76  AEVQALSGKPVFLLDGGTSAWVAAGLP 102

>d1urha1 c.46.1.2 (A:2-148) 3-mercaptopyruvate sulfurtransferase {Escherichia coli [TaxId: 562]} Length = 147

class: Alpha and beta proteins (a/b)
fold: Rhodanese/Cell cycle control phosphatase
superfamily: Rhodanese/Cell cycle control phosphatase
family: Multidomain sulfurtransferase (rhodanese)
domain: 3-mercaptopyruvate sulfurtransferase
species: Escherichia coli [TaxId: 562]

 Score = 39.9 bits (92), Expect = 5e-05
 Identities = 27/151 (17%), Positives = 43/151 (28%), Gaps = 35/151 (23%)

Query: 95  VEAKEALRLQKENNFVILDVR----------PEAEFKEAHPPGAINVQIYRLIKEWTAWD 144
           V A        +    I+D R             E+   H PGA+   I  L    +   
Sbjct: 5   VGADWLAEHIDDPEIQIIDARMASPGQEDRNVAQEYLNGHIPGAVFFDIEALSDHTSPLP 64

Query: 145 IARRAAFAFFGIFSGTEENPEFLQSVESQLDKDAKIIVACATGGTMKPSQNLPEGQQSRS 204
                   F                 E  +++D  +IV                     +
Sbjct: 65  HMLPRPETFAVAM------------RELGVNQDKHLIVYDEGNLFS-------------A 99

Query: 205 LIAAYLLVLNGYKNVYHLEGGLYKWFKEELP 235
             A ++L   G + V  L GGL  W +++L 
Sbjct: 100 PRAWWMLRTFGVEKVSILGGGLAGWQRDDLL 130

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	240
d1tq1a_	119	Thiosulfate sulfurtransferase/Senescence-associate	99.93
d1e0ca2	136	Sulfurtransferase {Azotobacter vinelandii [TaxId:	99.92
d1yt8a1	136	Thiosulfate sulfurtransferase PA2603 {Pseudomonas	99.92
d1gmxa_	108	Sulfurtransferase GlpE {Escherichia coli [TaxId: 5	99.92
d1urha1	147	3-mercaptopyruvate sulfurtransferase {Escherichia	99.92
d1yt8a3	157	Thiosulfate sulfurtransferase PA2603 {Pseudomonas	99.91
d1uara1	143	Sulfurtransferase {Thermus thermophilus [TaxId: 27	99.91
d1e0ca1	135	Sulfurtransferase {Azotobacter vinelandii [TaxId:	99.9
d1qxna_	137	Polysulfide-sulfur transferase (sulfide dehydrogen	99.9
d1rhsa1	149	Rhodanese {Cow (Bos taurus) [TaxId: 9913]}	99.89
d1yt8a2	101	Thiosulfate sulfurtransferase PA2603 {Pseudomonas	99.89
d1rhsa2	144	Rhodanese {Cow (Bos taurus) [TaxId: 9913]}	99.89
d1uara2	141	Sulfurtransferase {Thermus thermophilus [TaxId: 27	99.89
d1t3ka_	132	Dual specificity phosphatase Cdc25 {Thale cress (A	99.88
d1yt8a4	130	Thiosulfate sulfurtransferase PA2603 {Pseudomonas	99.87
d1okga1	156	3-mercaptopyruvate sulfurtransferase {Leishmania m	99.84
d1urha2	120	3-mercaptopyruvate sulfurtransferase {Escherichia	99.84
d1okga2	139	3-mercaptopyruvate sulfurtransferase {Leishmania m	99.81
d1c25a_	161	CDC25a {Human (Homo sapiens) [TaxId: 9606]}	99.76
d2gwfa1	135	Ubiquitin carboxyl-terminal hydrolase 8, USP8 {Hum	99.73
d1ymka1	174	CDC25b {Human (Homo sapiens) [TaxId: 9606]}	99.73
d1hzma_	154	Erk2 binding domain of Mapk phosphatase mkp-3 {Hum	99.66
d1c4oa2	174	Nucleotide excision repair enzyme UvrB {Thermus th	86.91
d1xria_	151	Putative phosphatase At1g05000 {Thale cress (Arabi	86.7
d1ywfa1	272	Phosphotyrosine protein phosphatase PtpB {Mycobact	86.48
d1jl3a_	137	Arsenate reductase ArsC {Bacillus subtilis [TaxId:	85.86

>d1tq1a_ c.46.1.3 (A:) Thiosulfate sulfurtransferase/Senescence-associated protein {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Alpha and beta proteins (a/b)
fold: Rhodanese/Cell cycle control phosphatase
superfamily: Rhodanese/Cell cycle control phosphatase
family: Single-domain sulfurtransferase
domain: Thiosulfate sulfurtransferase/Senescence-associated protein
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=99.93  E-value=1.1e-26  Score=178.95  Aligned_cols=112  Identities=36%  Similarity=0.547  Sum_probs=97.7

Q ss_pred             ccccHHHHHHHhcCCCeEEEEcCChhhhhhCCCCCCeeechhhHHhhhhHHHHHHHhhhhhcccCCCCCCcHHHHHHHHh
Q 026302           93 RSVEAKEALRLQKENNFVILDVRPEAEFKEAHPPGAINVQIYRLIKEWTAWDIARRAAFAFFGIFSGTEENPEFLQSVES  172 (240)
Q Consensus        93 ~~Is~~el~~~l~~~~~~lIDvR~~~ey~~ghIpGAinip~~~l~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~  172 (240)
                      ..|++.++.+++++ +.+|||||++.||..||||||+|+|+..+...                   .....++++.++..
T Consensus         8 ~~i~~~~a~~l~~~-g~~liDvR~~~e~~~ghi~ga~~ip~~~~~~~-------------------~~~~~~~~~~~~~~   67 (119)
T d1tq1a_           8 SSVSVTVAHDLLLA-GHRYLDVRTPEEFSQGHACGAINVPYMNRGAS-------------------GMSKNTDFLEQVSS   67 (119)
T ss_dssp             EEEEHHHHHHHHHH-TCCEEEESCHHHHHHCCBTTBEECCSCCCSTT-------------------TCCCTTTHHHHHTT
T ss_pred             CccCHHHHHHHHHC-cCEEEECCCHHHHHcCCCCCccchhhcccccc-------------------cccccHHHHHHHHH
Confidence            47899999998876 67899999999999999999999998654321                   12345777888878


Q ss_pred             cCCCCCcEEEEcCCCCCCCCCCCCCCchhhHHHHHHHHHHHCCCCceEEccccHHHHHhCCCCCcc
Q 026302          173 QLDKDAKIIVACATGGTMKPSQNLPEGQQSRSLIAAYLLVLNGYKNVYHLEGGLYKWFKEELPEVS  238 (240)
Q Consensus       173 ~i~~~~~IVvyC~~G~~~~~~~~~~~~~~~rs~~aa~~L~~~G~~nV~~l~GG~~~W~~~g~pv~~  238 (240)
                      .++++++|||||++|.              ||..++..|.++||+||++|+||+.+|.++|+|++.
T Consensus        68 ~~~~~~~iv~~C~~G~--------------rs~~a~~~L~~~G~~nv~~l~GG~~~W~~~g~P~ea  119 (119)
T d1tq1a_          68 HFGQSDNIIVGCQSGG--------------RSIKATTDLLHAGFTGVKDIVGGYSAWAKNGLPTKA  119 (119)
T ss_dssp             TCCTTSSEEEEESSCS--------------HHHHHHHHHHHHHCCSEEEEECCHHHHHHHTCCCC-
T ss_pred             hcCCCcEEEEEcCCcC--------------cHHHHHHHHHhcccCCeEEecChHHHHHHCCCCccC
Confidence            8899999999999998              999999999999999999999999999999999973

>d1e0ca2 c.46.1.2 (A:136-271) Sulfurtransferase {Azotobacter vinelandii [TaxId: 354]}

class: Alpha and beta proteins (a/b)
fold: Rhodanese/Cell cycle control phosphatase
superfamily: Rhodanese/Cell cycle control phosphatase
family: Multidomain sulfurtransferase (rhodanese)
domain: Sulfurtransferase
species: Azotobacter vinelandii [TaxId: 354]

Probab=99.92  E-value=1.6e-25  Score=176.78  Aligned_cols=115  Identities=20%  Similarity=0.291  Sum_probs=97.5

Q ss_pred             ccccHHHHHHHhcCCCeEEEEcCChhhhh--------hCCCCCCeeechhhHHhhhhHHHHHHHhhhhhcccCCCCCCcH
Q 026302           93 RSVEAKEALRLQKENNFVILDVRPEAEFK--------EAHPPGAINVQIYRLIKEWTAWDIARRAAFAFFGIFSGTEENP  164 (240)
Q Consensus        93 ~~Is~~el~~~l~~~~~~lIDvR~~~ey~--------~ghIpGAinip~~~l~~~~~~~~~~~~~~~~~~g~~~~~~~~~  164 (240)
                      ..++.+++.+.+.+++++|||+|++.||.        .||||||+|+|+..+.+.              .+.+...+++.
T Consensus        12 ~~~s~d~l~~~l~~~~~~liD~R~~~ey~G~~~~~~~~GhIPGAinip~~~~~~~--------------~~~~~~~~~l~   77 (136)
T d1e0ca2          12 PTASRDYLLGRLGAADLAIWDARSPQEYRGEKVLAAKGGHIPGAVNFEWTAAMDP--------------SRALRIRTDIA   77 (136)
T ss_dssp             TBCCHHHHHHHTTCTTEEEEECSCHHHHTTSSCCSSSCSBCTTCEECCGGGGEEG--------------GGTTEECTTHH
T ss_pred             ceEcHHHHHHhhCCCCeEEEECcChHHhcccccccccCCcchhHhhhhhhhhhcc--------------ccccchhHHHh
Confidence            36999999999999899999999999996        799999999999876542              12333444555


Q ss_pred             HHHHHHHhcCCCCCcEEEEcCCCCCCCCCCCCCCchhhHHHHHHHHHHHCCCCceEEccccHHHHHh-CCCCCc
Q 026302          165 EFLQSVESQLDKDAKIIVACATGGTMKPSQNLPEGQQSRSLIAAYLLVLNGYKNVYHLEGGLYKWFK-EELPEV  237 (240)
Q Consensus       165 ~~~~~~~~~i~~~~~IVvyC~~G~~~~~~~~~~~~~~~rs~~aa~~L~~~G~~nV~~l~GG~~~W~~-~g~pv~  237 (240)
                      +.++++  +++++++||+||++|.              +|..+++.|+.+||+||++|+|||.+|.+ .++||+
T Consensus        78 ~~~~~~--gi~~~~~vV~yC~~G~--------------~a~~~~~~l~~~G~~~v~~ydGg~~eW~~~~~~PvE  135 (136)
T d1e0ca2          78 GRLEEL--GITPDKEIVTHCQTHH--------------RSGLTYLIAKALGYPRVKGYAGSWGEWGNHPDTPVE  135 (136)
T ss_dssp             HHHHHT--TCCTTSEEEEECSSSS--------------HHHHHHHHHHHTTCSCEEECSSHHHHHTTCTTCCCB
T ss_pred             hhhhhc--ccCCCCceEEeCCChH--------------HHHHHHHHHHHcCCCCcEEecCCHHHHhcCCCCCCc
Confidence            555554  7899999999999997              99999999999999999999999999976 599986

>d1yt8a1 c.46.1.2 (A:107-242) Thiosulfate sulfurtransferase PA2603 {Pseudomonas aeruginosa [TaxId: 287]}

class: Alpha and beta proteins (a/b)
fold: Rhodanese/Cell cycle control phosphatase
superfamily: Rhodanese/Cell cycle control phosphatase
family: Multidomain sulfurtransferase (rhodanese)
domain: Thiosulfate sulfurtransferase PA2603
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=99.92  E-value=3.8e-25  Score=174.57  Aligned_cols=108  Identities=28%  Similarity=0.376  Sum_probs=94.6

Q ss_pred             hcCccccHHHHHHHhcCC-CeEEEEcCChhhhhhCCCCCCeeechhhHHhhhhHHHHHHHhhhhhcccCCCCCCcHHHHH
Q 026302           90 KRVRSVEAKEALRLQKEN-NFVILDVRPEAEFKEAHPPGAINVQIYRLIKEWTAWDIARRAAFAFFGIFSGTEENPEFLQ  168 (240)
Q Consensus        90 ~~~~~Is~~el~~~l~~~-~~~lIDvR~~~ey~~ghIpGAinip~~~l~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~  168 (240)
                      ..++.|+++++.++++++ +++|||||++.||..||||||+|+|...+...                           +.
T Consensus        21 ~~~~~Is~~el~~~l~~~~~~~liDvR~~~e~~~ghIpGAi~ip~~~l~~~---------------------------~~   73 (136)
T d1yt8a1          21 RHTPSLAAEEVQALLDARAEAVILDARRFDEYQTMSIPGGISVPGAELVLR---------------------------VA   73 (136)
T ss_dssp             HCCCEECHHHHHHHHHTTCSEEEEECSCHHHHHHSBCTTCEECCGGGHHHH---------------------------HH
T ss_pred             cCCCccCHHHHHHHHhcCCCcEEEEcCChhhccceecCCchhhhhhHHHHH---------------------------hh
Confidence            567799999999998654 68999999999999999999999999876543                           22


Q ss_pred             HHHhcCCCCCcEEEEcCCCCCCCCCCCCCCchhhHHHHHHHHHHHCCCCc-eEEccccHHHHHhCCCCCccCC
Q 026302          169 SVESQLDKDAKIIVACATGGTMKPSQNLPEGQQSRSLIAAYLLVLNGYKN-VYHLEGGLYKWFKEELPEVSEE  240 (240)
Q Consensus       169 ~~~~~i~~~~~IVvyC~~G~~~~~~~~~~~~~~~rs~~aa~~L~~~G~~n-V~~l~GG~~~W~~~g~pv~~~~  240 (240)
                      ++  ..+++++||+||.+|.              +|..++.+|+.+||+| |++|+||+.+|..+|+|+++|+
T Consensus        74 ~l--~~~~~~~iV~~C~~g~--------------rs~~aa~~L~~~G~~~~V~~L~GG~~~W~~~G~pve~g~  130 (136)
T d1yt8a1          74 EL--APDPRTRVIVNCAGRT--------------RSIIGTQSLLNAGIPNPVAALRNGTIGWTLAGQQLEHGQ  130 (136)
T ss_dssp             HH--CCSTTSEEEEECSSSH--------------HHHHHHHHHHHTTCSSCEEEETTHHHHHHHTTCCCBCSC
T ss_pred             cc--cccccceEEEEcCCCC--------------chHHHHHHHHHcCCCceEEEeCCcHHHHHHCCCCceeCC
Confidence            22  3568889999999997              9999999999999986 9999999999999999999885

>d1gmxa_ c.46.1.3 (A:) Sulfurtransferase GlpE {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Rhodanese/Cell cycle control phosphatase
superfamily: Rhodanese/Cell cycle control phosphatase
family: Single-domain sulfurtransferase
domain: Sulfurtransferase GlpE
species: Escherichia coli [TaxId: 562]

Probab=99.92  E-value=1.1e-25  Score=170.78  Aligned_cols=102  Identities=25%  Similarity=0.424  Sum_probs=91.5

Q ss_pred             cCccccHHHHHHHhcCCCeEEEEcCChhhhhhCCCCCCeeechhhHHhhhhHHHHHHHhhhhhcccCCCCCCcHHHHHHH
Q 026302           91 RVRSVEAKEALRLQKENNFVILDVRPEAEFKEAHPPGAINVQIYRLIKEWTAWDIARRAAFAFFGIFSGTEENPEFLQSV  170 (240)
Q Consensus        91 ~~~~Is~~el~~~l~~~~~~lIDvR~~~ey~~ghIpGAinip~~~l~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~  170 (240)
                      .++.|+++|+.+++++++++|||||++.||..||||||+|+|..++...+                              
T Consensus         3 ~~~~Is~~e~~~~l~~~~~~liDvR~~~e~~~ghI~gA~~ip~~~l~~~~------------------------------   52 (108)
T d1gmxa_           3 QFECINVADAHQKLQEKEAVLVDIRDPQSFAMGHAVQAFHLTNDTLGAFM------------------------------   52 (108)
T ss_dssp             SCEEECHHHHHHHHHTTCCEEEECSCHHHHHHCEETTCEECCHHHHHHHH------------------------------
T ss_pred             CCCEeCHHHHHHHHHCCCeEEEECCCHHHHHhcCCCCcccccchhHHHHh------------------------------
Confidence            46789999999999988999999999999999999999999998764432                              


Q ss_pred             HhcCCCCCcEEEEcCCCCCCCCCCCCCCchhhHHHHHHHHHHHCCCCceEEccccHHHHHhCCCCCcc
Q 026302          171 ESQLDKDAKIIVACATGGTMKPSQNLPEGQQSRSLIAAYLLVLNGYKNVYHLEGGLYKWFKEELPEVS  238 (240)
Q Consensus       171 ~~~i~~~~~IVvyC~~G~~~~~~~~~~~~~~~rs~~aa~~L~~~G~~nV~~l~GG~~~W~~~g~pv~~  238 (240)
                       ..++++++|||||.+|.              ||..++..|.+.||+||++|+||+.+|.++ +|++.
T Consensus        53 -~~~~~~~~ivv~c~~g~--------------rs~~~a~~L~~~G~~~v~~l~GG~~~W~~~-~p~e~  104 (108)
T d1gmxa_          53 -RDNDFDTPVMVMCYHGN--------------SSKGAAQYLLQQGYDVVYSIDGGFEAWQRQ-FPAEV  104 (108)
T ss_dssp             -HHSCTTSCEEEECSSSS--------------HHHHHHHHHHHHTCSSEEEETTHHHHHHHH-CGGGE
T ss_pred             -hhccccCcccccCCCCh--------------HHHHHHHHHHHcCCCCEEEEcChHHHHHHc-CCCcc
Confidence             35789999999999998              999999999999999999999999999755 88764

>d1urha1 c.46.1.2 (A:2-148) 3-mercaptopyruvate sulfurtransferase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Rhodanese/Cell cycle control phosphatase
superfamily: Rhodanese/Cell cycle control phosphatase
family: Multidomain sulfurtransferase (rhodanese)
domain: 3-mercaptopyruvate sulfurtransferase
species: Escherichia coli [TaxId: 562]

Probab=99.92  E-value=1.4e-25  Score=179.33  Aligned_cols=122  Identities=21%  Similarity=0.250  Sum_probs=98.2

Q ss_pred             cccHHHHHHHhcCCCeEEEEcC----------ChhhhhhCCCCCCeeechhhHHhhhhHHHHHHHhhhhhcccCCCCCCc
Q 026302           94 SVEAKEALRLQKENNFVILDVR----------PEAEFKEAHPPGAINVQIYRLIKEWTAWDIARRAAFAFFGIFSGTEEN  163 (240)
Q Consensus        94 ~Is~~el~~~l~~~~~~lIDvR----------~~~ey~~ghIpGAinip~~~l~~~~~~~~~~~~~~~~~~g~~~~~~~~  163 (240)
                      .|++++|.+.|++++++|||+|          ..++|..||||||+|+++..+.....          .+.++++..+.+
T Consensus         4 lVs~~wL~~~L~~~~v~iiD~r~~~~~~~~~~~~~~y~~gHIPGAi~~~~~~~~~~~~----------~~~~~~p~~~~~   73 (147)
T d1urha1           4 FVGADWLAEHIDDPEIQIIDARMASPGQEDRNVAQEYLNGHIPGAVFFDIEALSDHTS----------PLPHMLPRPETF   73 (147)
T ss_dssp             EECHHHHHTTTTCTTEEEEECCCCCSSCTTCCHHHHHHHSBCTTCEECCGGGGSCSSS----------SSSSCCCCHHHH
T ss_pred             cCcHHHHHHHhCCCCeEEEEeeCCCCCccCccHHHHHHhCCccccEEeehhhhccccc----------cccccCCCHHHH
Confidence            5899999999999999999999          34689999999999999876543210          122333333344


Q ss_pred             HHHHHHHHhcCCCCCcEEEEcCCCCCCCCCCCCCCchhhHHHHHHHHHHHCCCCceEEccccHHHHHhCCCCCccCC
Q 026302          164 PEFLQSVESQLDKDAKIIVACATGGTMKPSQNLPEGQQSRSLIAAYLLVLNGYKNVYHLEGGLYKWFKEELPEVSEE  240 (240)
Q Consensus       164 ~~~~~~~~~~i~~~~~IVvyC~~G~~~~~~~~~~~~~~~rs~~aa~~L~~~G~~nV~~l~GG~~~W~~~g~pv~~~~  240 (240)
                      .++++++  +++++++||+||..+..             .|.++++.|+.+||+||++|+||+.+|.++|+|+++++
T Consensus        74 ~~~l~~~--Gi~~~~~vVvY~~~~~~-------------~A~r~~~~L~~~G~~~V~vLdGG~~~W~~~g~pv~~~~  135 (147)
T d1urha1          74 AVAMREL--GVNQDKHLIVYDEGNLF-------------SAPRAWWMLRTFGVEKVSILGGGLAGWQRDDLLLEEGA  135 (147)
T ss_dssp             HHHHHHT--TCCTTSEEEEECSSSCS-------------SHHHHHHHHHHTTCSCEEEETTHHHHHHHTTCCCBBSC
T ss_pred             HHHHHHh--CcCCCCeEEEEeCCCcc-------------cchhHHHHHHhhcccceEEeCChHHHHHHcCCCccCCC
Confidence            4444444  78999999999987652             78899999999999999999999999999999999874

>d1yt8a3 c.46.1.2 (A:373-529) Thiosulfate sulfurtransferase PA2603 {Pseudomonas aeruginosa [TaxId: 287]}

class: Alpha and beta proteins (a/b)
fold: Rhodanese/Cell cycle control phosphatase
superfamily: Rhodanese/Cell cycle control phosphatase
family: Multidomain sulfurtransferase (rhodanese)
domain: Thiosulfate sulfurtransferase PA2603
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=99.91  E-value=5.4e-25  Score=177.27  Aligned_cols=105  Identities=22%  Similarity=0.333  Sum_probs=95.0

Q ss_pred             cCccccHHHHHHHhcCCCeEEEEcCChhhhhhCCCCCCeeechhhHHhhhhHHHHHHHhhhhhcccCCCCCCcHHHHHHH
Q 026302           91 RVRSVEAKEALRLQKENNFVILDVRPEAEFKEAHPPGAINVQIYRLIKEWTAWDIARRAAFAFFGIFSGTEENPEFLQSV  170 (240)
Q Consensus        91 ~~~~Is~~el~~~l~~~~~~lIDvR~~~ey~~ghIpGAinip~~~l~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~  170 (240)
                      .+..|+++++.+++++++.+|||||++.||..||||||+|+|...+....                              
T Consensus         3 ~~~~Is~~el~~~l~~~~~~ivDvR~~~e~~~ghIpga~~~~~~~~~~~~------------------------------   52 (157)
T d1yt8a3           3 RADTIDPTTLADWLGEPGTRVLDFTASANYAKRHIPGAAWVLRSQLKQAL------------------------------   52 (157)
T ss_dssp             CCCEECHHHHHHHTTSTTEEEEECSCHHHHHHCBCTTCEECCGGGHHHHH------------------------------
T ss_pred             CCCEECHHHHHHHHhCCCeEEEEeCCHHHHhhcccccceecccccccccc------------------------------
Confidence            45689999999999988999999999999999999999999998764321                              


Q ss_pred             HhcCCCCCcEEEEcCCCCCCCCCCCCCCchhhHHHHHHHHHHHCCCCceEEccccHHHHHhCCCCCccCC
Q 026302          171 ESQLDKDAKIIVACATGGTMKPSQNLPEGQQSRSLIAAYLLVLNGYKNVYHLEGGLYKWFKEELPEVSEE  240 (240)
Q Consensus       171 ~~~i~~~~~IVvyC~~G~~~~~~~~~~~~~~~rs~~aa~~L~~~G~~nV~~l~GG~~~W~~~g~pv~~~~  240 (240)
                       ..++++++|||||.+|.              +|..++..|..+||+||++|+||+.+|.++|+|+++++
T Consensus        53 -~~~~~~~~vv~~c~~g~--------------rs~~~a~~l~~~G~~~v~~L~GG~~~W~~aGlp~~~~~  107 (157)
T d1yt8a3          53 -ERLGTAERYVLTCGSSL--------------LARFAVAEVQALSGKPVFLLDGGTSAWVAAGLPTEDGE  107 (157)
T ss_dssp             -HHHCCCSEEEEECSSSH--------------HHHHHHHHHHHHHCSCEEEETTHHHHHHHTTCCCBCSS
T ss_pred             -cccccCcceeeccCCcc--------------hHHHHHHHHhcccCceEEEecCCHHHHhhCCCCCcCCC
Confidence             34678999999999997              99999999999999999999999999999999999863

>d1uara1 c.46.1.2 (A:2-144) Sulfurtransferase {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: Rhodanese/Cell cycle control phosphatase
superfamily: Rhodanese/Cell cycle control phosphatase
family: Multidomain sulfurtransferase (rhodanese)
domain: Sulfurtransferase
species: Thermus thermophilus [TaxId: 274]

Probab=99.91  E-value=2.4e-25  Score=177.16  Aligned_cols=119  Identities=20%  Similarity=0.314  Sum_probs=95.6

Q ss_pred             cccHHHHHHHhcCCCeEEEEcCC-hhhhhhCCCCCCeeechhhHHhhhhHHHHHHHhhhhhcccCCCCCCcHHHHHHHHh
Q 026302           94 SVEAKEALRLQKENNFVILDVRP-EAEFKEAHPPGAINVQIYRLIKEWTAWDIARRAAFAFFGIFSGTEENPEFLQSVES  172 (240)
Q Consensus        94 ~Is~~el~~~l~~~~~~lIDvR~-~~ey~~ghIpGAinip~~~l~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~  172 (240)
                      .|+++||.+.+++++++|||||. ..+|..||||||+|+|+......            .+.+++...+.+.+.+.++  
T Consensus         8 lVs~~~l~~~l~~~~v~iiDvr~~~~~y~~gHIPgAi~~~~~~~~~~------------~~~~~l~~~~~l~~~~~~~--   73 (143)
T d1uara1           8 LVSTDWVQEHLEDPKVRVLEVDEDILLYDTGHIPGAQKIDWQRDFWD------------PVVRDFISEEEFAKLMERL--   73 (143)
T ss_dssp             EECHHHHHTTTTCTTEEEEEECSSTTHHHHCBCTTCEEECHHHHHBC------------SSSSSBCCHHHHHHHHHHT--
T ss_pred             cCcHHHHHHHhCCCCeEEEECCCCHHHHhcCCCCCcccccccccccc------------cccccchhhHHHHHHhhhh--
Confidence            68999999999988999999995 78899999999999998654321            1122222222333333333  


Q ss_pred             cCCCCCcEEEEcCCCCCCCCCCCCCCchhhHHHHHHHHHHHCCCCceEEccccHHHHHhCCCCCccC
Q 026302          173 QLDKDAKIIVACATGGTMKPSQNLPEGQQSRSLIAAYLLVLNGYKNVYHLEGGLYKWFKEELPEVSE  239 (240)
Q Consensus       173 ~i~~~~~IVvyC~~G~~~~~~~~~~~~~~~rs~~aa~~L~~~G~~nV~~l~GG~~~W~~~g~pv~~~  239 (240)
                      +++++++|||||+.|.             ..|.++++.|+.+||++|++|+||+.+|..+|+|++++
T Consensus        74 Gi~~~~~iVvy~~~~~-------------~~a~~~~~~l~~~G~~~V~vldGG~~~W~~~g~p~~~~  127 (143)
T d1uara1          74 GISNDTTVVLYGDKNN-------------WWAAYAFWFFKYNGHKDVRLMNGGRQKWVEEGRPLTTE  127 (143)
T ss_dssp             TCCTTCEEEEECHHHH-------------HHHHHHHHHHHHTTCSCEEEETTHHHHHHHHTCCCBCC
T ss_pred             ccCCCceEEEecCCCc-------------ccchhHHHHHHHhCCceEEEEcCcHHHHHHCCCCccCC
Confidence            6799999999998876             27889999999999999999999999999999999986

>d1e0ca1 c.46.1.2 (A:1-135) Sulfurtransferase {Azotobacter vinelandii [TaxId: 354]}

class: Alpha and beta proteins (a/b)
fold: Rhodanese/Cell cycle control phosphatase
superfamily: Rhodanese/Cell cycle control phosphatase
family: Multidomain sulfurtransferase (rhodanese)
domain: Sulfurtransferase
species: Azotobacter vinelandii [TaxId: 354]

Probab=99.90  E-value=9.3e-24  Score=164.01  Aligned_cols=120  Identities=25%  Similarity=0.302  Sum_probs=94.1

Q ss_pred             cccHHHHHHHhcCCCeEEEEcCChhhhhhCCCCCCeeechhhHHhhhhHHHHHHHhhhhhcccCCCCCCcHHHHHHH--H
Q 026302           94 SVEAKEALRLQKENNFVILDVRPEAEFKEAHPPGAINVQIYRLIKEWTAWDIARRAAFAFFGIFSGTEENPEFLQSV--E  171 (240)
Q Consensus        94 ~Is~~el~~~l~~~~~~lIDvR~~~ey~~ghIpGAinip~~~l~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~--~  171 (240)
                      .|+++||.+++++++++|||||+++||..||||||+|+|+..+.....              .........+.....  .
T Consensus        10 lIs~~el~~~l~~~~~viiDvR~~~ey~~gHIpgA~~~~~~~~~~~~~--------------~~~~~~~~~~~~~~~~~~   75 (135)
T d1e0ca1          10 VIEPADLQARLSAPELILVDLTSAARYAEGHIPGARFVDPKRTQLGQP--------------PAPGLQPPREQLESLFGE   75 (135)
T ss_dssp             EECHHHHHTTTTCTTEEEEECSCHHHHHHCBSTTCEECCGGGGSCCCT--------------TCTTSCCCHHHHHHHHHH
T ss_pred             EeeHHHHHHHhcCCCeEEEECCCHHHHhcccCccccccchhhhhhccc--------------ccchhhcchhhhhhhhcc
Confidence            589999999999889999999999999999999999999887643210              011111222222221  2


Q ss_pred             hcCCCCCcEEEEcCCCCCCCCCCCCCCchhhHHHHHHHHHHHCCCCceEEccccHHHHHhCCCCCccCC
Q 026302          172 SQLDKDAKIIVACATGGTMKPSQNLPEGQQSRSLIAAYLLVLNGYKNVYHLEGGLYKWFKEELPEVSEE  240 (240)
Q Consensus       172 ~~i~~~~~IVvyC~~G~~~~~~~~~~~~~~~rs~~aa~~L~~~G~~nV~~l~GG~~~W~~~g~pv~~~~  240 (240)
                      .....+..+|+||..+.             .++.++++.|+.+||+||++|+||+.+|.++|+|+++++
T Consensus        76 ~~~~~~~~~i~~~~~~~-------------~~~~~~~~~l~~~G~~~V~~l~GG~~~W~~~g~p~~~~~  131 (135)
T d1e0ca1          76 LGHRPEAVYVVYDDEGG-------------GWAGRFIWLLDVIGQQRYHYLNGGLTAWLAEDRPLSREL  131 (135)
T ss_dssp             HTCCTTCEEEEECSSSS-------------HHHHHHHHHHHHTTCCCEEEETTHHHHHHHTTCCCBCCC
T ss_pred             ccccccccccccccccC-------------ccchhhHHHHHhccCCCEEEecChHHHHHHCCCCCCCCC
Confidence            35677788888887665             388999999999999999999999999999999999874

>d1qxna_ c.46.1.3 (A:) Polysulfide-sulfur transferase (sulfide dehydrogenase, Sud) {Wolinella succinogenes [TaxId: 844]}

class: Alpha and beta proteins (a/b)
fold: Rhodanese/Cell cycle control phosphatase
superfamily: Rhodanese/Cell cycle control phosphatase
family: Single-domain sulfurtransferase
domain: Polysulfide-sulfur transferase (sulfide dehydrogenase, Sud)
species: Wolinella succinogenes [TaxId: 844]

Probab=99.90  E-value=1.2e-23  Score=165.95  Aligned_cols=107  Identities=27%  Similarity=0.466  Sum_probs=93.5

Q ss_pred             hcCccccHHHHHHHhc-CCCeEEEEcCChhhhhhCC---CCCCeeechhhHHhhhhHHHHHHHhhhhhcccCCCCCCcHH
Q 026302           90 KRVRSVEAKEALRLQK-ENNFVILDVRPEAEFKEAH---PPGAINVQIYRLIKEWTAWDIARRAAFAFFGIFSGTEENPE  165 (240)
Q Consensus        90 ~~~~~Is~~el~~~l~-~~~~~lIDvR~~~ey~~gh---IpGAinip~~~l~~~~~~~~~~~~~~~~~~g~~~~~~~~~~  165 (240)
                      ..+..|+++|+.++++ +++++|||||++.||+.+|   |+|++|+|...+...+                         
T Consensus        20 ~~~~~Isp~e~~~ll~~~~~~~lIDvR~~~E~~~~hip~i~~a~~ip~~~l~~~~-------------------------   74 (137)
T d1qxna_          20 ADMVMLSPKDAYKLLQENPDITLIDVRDPDELKAMGKPDVKNYKHMSRGKLEPLL-------------------------   74 (137)
T ss_dssp             HSSEEECHHHHHHHHHHCTTSEEEECCCHHHHHHTCEECCSSEEECCTTTSHHHH-------------------------
T ss_pred             ccCCEEcHHHHHHHHHcCcCEEEEECCcHHHHHHhccccccccccCCcccccccc-------------------------
Confidence            6788999999999996 4579999999999999999   6678999987654321                         


Q ss_pred             HHHHHHhcCCCCCcEEEEcCCCCCCCCCCCCCCchhhHHHHHHHHHHHCCCCceEEccccHHHHHhCCCCCccC
Q 026302          166 FLQSVESQLDKDAKIIVACATGGTMKPSQNLPEGQQSRSLIAAYLLVLNGYKNVYHLEGGLYKWFKEELPEVSE  239 (240)
Q Consensus       166 ~~~~~~~~i~~~~~IVvyC~~G~~~~~~~~~~~~~~~rs~~aa~~L~~~G~~nV~~l~GG~~~W~~~g~pv~~~  239 (240)
                        ..  ..++++++|||||.+|.              ||..++..|..+||+||++|+||+.+|.++|+|++..
T Consensus        75 --~~--~~~~~~~~ivvyC~~G~--------------rs~~aa~~L~~~G~~nV~~l~GG~~~W~~~g~P~~~~  130 (137)
T d1qxna_          75 --AK--SGLDPEKPVVVFCKTAA--------------RAALAGKTLREYGFKTIYNSEGGMDKWLEEGLPSLDR  130 (137)
T ss_dssp             --HH--HCCCTTSCEEEECCSSS--------------CHHHHHHHHHHHTCSCEEEESSCHHHHHHTTCCEECC
T ss_pred             --cc--cccCcccceeeeecccc--------------hHHHHHHHHHHcCCCcEEEecCHHHHHHHcCCCCCCC
Confidence              12  26899999999999998              8999999999999999999999999999999998764

>d1rhsa1 c.46.1.2 (A:1-149) Rhodanese {Cow (Bos taurus) [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: Rhodanese/Cell cycle control phosphatase
superfamily: Rhodanese/Cell cycle control phosphatase
family: Multidomain sulfurtransferase (rhodanese)
domain: Rhodanese
species: Cow (Bos taurus) [TaxId: 9913]

Probab=99.89  E-value=4.8e-24  Score=170.67  Aligned_cols=124  Identities=20%  Similarity=0.274  Sum_probs=95.0

Q ss_pred             cccHHHHHHHhcC----CCeEEEEcC--------ChhhhhhCCCCCCeeechhhHHhhhhHHHHHHHhhhhhcccCCCCC
Q 026302           94 SVEAKEALRLQKE----NNFVILDVR--------PEAEFKEAHPPGAINVQIYRLIKEWTAWDIARRAAFAFFGIFSGTE  161 (240)
Q Consensus        94 ~Is~~el~~~l~~----~~~~lIDvR--------~~~ey~~ghIpGAinip~~~l~~~~~~~~~~~~~~~~~~g~~~~~~  161 (240)
                      .|+++||.+.|++    ++++|||+|        ..++|.+||||||+|++++.+....          -.+.+.++...
T Consensus         9 lVs~~wL~~~L~~~~~~~~~~IiD~r~~~~~~~~~~~~y~~gHIPGAv~~~~~~~~~~~----------~~~~~~~~~~~   78 (149)
T d1rhsa1           9 LVSTKWLAESVRAGKVGPGLRVLDASWYSPGTREARKEYLERHVPGASFFDIEECRDKA----------SPYEVMLPSEA   78 (149)
T ss_dssp             EECHHHHHHHHHTTCCBTTEEEEECCCCCTTSCCHHHHHHHSBCTTCEECCTTTSSCTT----------SSSSSCCCCHH
T ss_pred             ccCHHHHHHHHhccCCCCCEEEEEecCcCCCCcchHHHHHHhcccCceeccHHhhcccc----------cchhhhhhhhH
Confidence            5899999999973    479999999        4578999999999999987654321          01122333333


Q ss_pred             CcHHHHHHHHhcCCCCCcEEEEcCCCCCCCCCCCCCCchhhHHHHHHHHHHHCCCCceEEccccHHHHHhCCCCCccCC
Q 026302          162 ENPEFLQSVESQLDKDAKIIVACATGGTMKPSQNLPEGQQSRSLIAAYLLVLNGYKNVYHLEGGLYKWFKEELPEVSEE  240 (240)
Q Consensus       162 ~~~~~~~~~~~~i~~~~~IVvyC~~G~~~~~~~~~~~~~~~rs~~aa~~L~~~G~~nV~~l~GG~~~W~~~g~pv~~~~  240 (240)
                      .+.+.+..+  +++++++|||||.....           ...|.++++.|+.+||+||++|+||+.+|+++|+|++++.
T Consensus        79 ~~~~~l~~~--Gi~~~~~vVvy~~~~~~-----------~~~a~r~~w~L~~~G~~~V~vLdGG~~~W~~~G~pv~~~~  144 (149)
T d1rhsa1          79 GFADYVGSL--GISNDTHVVVYDGDDLG-----------SFYAPRVWWMFRVFGHRTVSVLNGGFRNWLKEGHPVTSEP  144 (149)
T ss_dssp             HHHHHHHHT--TCCTTCEEEEECCCSSS-----------CSSHHHHHHHHHHTTCCCEEEETTHHHHHHHTTCCCBCSC
T ss_pred             HHHHHHhhh--hccCCceeEEeeccCCc-----------chhhhHHHHHHHHcCCCceEEeCCcHHHHHHCcCcccCCC
Confidence            344444444  78999999999975210           0268899999999999999999999999999999998863

>d1yt8a2 c.46.1.2 (A:6-106) Thiosulfate sulfurtransferase PA2603 {Pseudomonas aeruginosa [TaxId: 287]}

class: Alpha and beta proteins (a/b)
fold: Rhodanese/Cell cycle control phosphatase
superfamily: Rhodanese/Cell cycle control phosphatase
family: Multidomain sulfurtransferase (rhodanese)
domain: Thiosulfate sulfurtransferase PA2603
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=99.89  E-value=3.1e-23  Score=154.45  Aligned_cols=99  Identities=29%  Similarity=0.327  Sum_probs=84.8

Q ss_pred             ccccHHHHHHHh-cCCCeEEEEcCChhhhhhCCCCCCeeechhhHHhhhhHHHHHHHhhhhhcccCCCCCCcHHHHHHHH
Q 026302           93 RSVEAKEALRLQ-KENNFVILDVRPEAEFKEAHPPGAINVQIYRLIKEWTAWDIARRAAFAFFGIFSGTEENPEFLQSVE  171 (240)
Q Consensus        93 ~~Is~~el~~~l-~~~~~~lIDvR~~~ey~~ghIpGAinip~~~l~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~  171 (240)
                      ..+|.+|+++.+ ++++++|||||++.||..||||||+|+|...+....                           ..  
T Consensus         2 ~v~S~~~l~~~l~~~~~~~liDvR~~~e~~~ghIpgAi~~~~~~~~~~~---------------------------~~--   52 (101)
T d1yt8a2           2 AVRTFHDIRAALLARRELALLDVREEDPFAQAHPLFAANLPLSRLELEI---------------------------HA--   52 (101)
T ss_dssp             EEECHHHHHHHHHHTCCBEEEECSCHHHHTTSBCTTCEECCGGGHHHHH---------------------------HH--
T ss_pred             CcCcHHHHHHHHHCCCCeEEEECCCHHHHHhccCCCcccccccchhhhh---------------------------hh--
Confidence            357889999876 455899999999999999999999999998765432                           11  


Q ss_pred             hcCCCCCcEEEEcCCCCCCCCCCCCCCchhhHHHHHHHHHHHCCCCceEEccccHHHHHhCCC
Q 026302          172 SQLDKDAKIIVACATGGTMKPSQNLPEGQQSRSLIAAYLLVLNGYKNVYHLEGGLYKWFKEEL  234 (240)
Q Consensus       172 ~~i~~~~~IVvyC~~G~~~~~~~~~~~~~~~rs~~aa~~L~~~G~~nV~~l~GG~~~W~~~g~  234 (240)
                      ...+++++||+||.+|.              +|..++..|+++||+||++|+||+.+|.++|.
T Consensus        53 ~~~~~~~~vv~~~~~g~--------------~s~~~~~~l~~~G~~nV~~l~GG~~~W~~aGg  101 (101)
T d1yt8a2          53 RVPRRDTPITVYDDGEG--------------LAPVAAQRLHDLGYSDVALLDGGLSGWRNAGG  101 (101)
T ss_dssp             HSCCTTSCEEEECSSSS--------------HHHHHHHHHHHTTCSSEEEETTHHHHHHHTTC
T ss_pred             cccccCceeeeccchhh--------------hHHHHHHHHHHcCCCcEEEeCChHHHHHHCcC
Confidence            14567889999999998              99999999999999999999999999999984

>d1rhsa2 c.46.1.2 (A:150-293) Rhodanese {Cow (Bos taurus) [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: Rhodanese/Cell cycle control phosphatase
superfamily: Rhodanese/Cell cycle control phosphatase
family: Multidomain sulfurtransferase (rhodanese)
domain: Rhodanese
species: Cow (Bos taurus) [TaxId: 9913]

Probab=99.89  E-value=3.3e-24  Score=170.86  Aligned_cols=115  Identities=20%  Similarity=0.358  Sum_probs=95.0

Q ss_pred             cccHHHHHHHhcCCCeEEEEcCChhhhh------------hCCCCCCeeechhhHHhhhhHHHHHHHhhhhhcccCCCCC
Q 026302           94 SVEAKEALRLQKENNFVILDVRPEAEFK------------EAHPPGAINVQIYRLIKEWTAWDIARRAAFAFFGIFSGTE  161 (240)
Q Consensus        94 ~Is~~el~~~l~~~~~~lIDvR~~~ey~------------~ghIpGAinip~~~l~~~~~~~~~~~~~~~~~~g~~~~~~  161 (240)
                      .++.+|+.+.+++++++|||+|++.||.            .||||||+|+|+..+....              +.+    
T Consensus        12 i~~~~ev~~~l~~~~~~iiD~R~~~ef~G~~~~~~~~~~~~GhIpgA~~ip~~~~~~~~--------------~~~----   73 (144)
T d1rhsa2          12 LKTYEQVLENLESKRFQLVDSRAQGRYLGTQPEPDAVGLDSGHIRGSVNMPFMNFLTED--------------GFE----   73 (144)
T ss_dssp             EECHHHHHHHHHHCCSEEEECSCHHHHHTSSCCSSSSSCCCCEETTCEECCGGGGBCTT--------------SCB----
T ss_pred             eecHHHHHHHhcCCCcEEEECCCCHHHcCCCCCCccccceeeehhhhhhcchhhhhhhh--------------ccc----
Confidence            6899999999998899999999999995            6999999999998764321              112    


Q ss_pred             CcHHHHHHHHh--cCCCCCcEEEEcCCCCCCCCCCCCCCchhhHHHHHHHHHHHCCCCceEEccccHHHHHhCC---CCC
Q 026302          162 ENPEFLQSVES--QLDKDAKIIVACATGGTMKPSQNLPEGQQSRSLIAAYLLVLNGYKNVYHLEGGLYKWFKEE---LPE  236 (240)
Q Consensus       162 ~~~~~~~~~~~--~i~~~~~IVvyC~~G~~~~~~~~~~~~~~~rs~~aa~~L~~~G~~nV~~l~GG~~~W~~~g---~pv  236 (240)
                      ..++.++++..  +++++++||+||.+|.              +|+.+++.|+.+||+||++|+|||.+|...+   .||
T Consensus        74 ~~~~~l~~~~~~~gi~~~~~iI~yC~sG~--------------~A~~~~~~l~~lG~~~v~~YdGsw~eW~~~~~p~~pV  139 (144)
T d1rhsa2          74 KSPEELRAMFEAKKVDLTKPLIATCRKGV--------------TACHIALAAYLCGKPDVAIYDGSWFEWFHRAPPETWV  139 (144)
T ss_dssp             CCHHHHHHHHHHTTCCTTSCEEEECSSSS--------------THHHHHHHHHHTTCCCCEEESSHHHHHHHHSCGGGEE
T ss_pred             CCHHHHHHHHHHcCCCCCCCEEEEecccc--------------hHHHHHHHHHHcCCCCCEEeCCCHHHHhhcCCCCCCc
Confidence            23444444432  6899999999999998              9999999999999999999999999999876   577


Q ss_pred             ccCC
Q 026302          237 VSEE  240 (240)
Q Consensus       237 ~~~~  240 (240)
                      ++||
T Consensus       140 ~~G~  143 (144)
T d1rhsa2         140 SQGK  143 (144)
T ss_dssp             BTTB
T ss_pred             CCCC
Confidence            7764

>d1uara2 c.46.1.2 (A:145-285) Sulfurtransferase {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: Rhodanese/Cell cycle control phosphatase
superfamily: Rhodanese/Cell cycle control phosphatase
family: Multidomain sulfurtransferase (rhodanese)
domain: Sulfurtransferase
species: Thermus thermophilus [TaxId: 274]

Probab=99.89  E-value=7.5e-24  Score=168.24  Aligned_cols=106  Identities=27%  Similarity=0.428  Sum_probs=85.3

Q ss_pred             HhcCCCeEEEEcCChhhhh----------------hCCCCCCeeechhhHHhhhhHHHHHHHhhhhhcccCCCCCCcHHH
Q 026302          103 LQKENNFVILDVRPEAEFK----------------EAHPPGAINVQIYRLIKEWTAWDIARRAAFAFFGIFSGTEENPEF  166 (240)
Q Consensus       103 ~l~~~~~~lIDvR~~~ey~----------------~ghIpGAinip~~~l~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~  166 (240)
                      .+++++.+|||+|++.||.                .||||||+|+|+.++...-              +.    ...++.
T Consensus        15 ~~~~~~~~lvD~R~~~ey~G~~~~~~~~~~~~~~r~GhIpgA~nlp~~~~~~~~--------------~~----~~~~~~   76 (141)
T d1uara2          15 KVKEGKGALVDVRSPQEYRGELTHMPDYPQEGALRAGHIPGAKNIPWAKAVNPD--------------GT----FKSAEE   76 (141)
T ss_dssp             HHHTTSEEEEECSCHHHHHTCC--------CCCSCCSBCTTCEECCGGGGBCTT--------------SC----BCCHHH
T ss_pred             HhhCCCcEEEeCCCHHHcCCccCcccccCcccceeeeEeCCccccccccccccc--------------cc----cccHHH
Confidence            3456689999999999996                7999999999998764321              11    223444


Q ss_pred             HHHHHh--cCCCCCcEEEEcCCCCCCCCCCCCCCchhhHHHHHHHHHHH-CCCCceEEccccHHHHHh-CCCCCccCC
Q 026302          167 LQSVES--QLDKDAKIIVACATGGTMKPSQNLPEGQQSRSLIAAYLLVL-NGYKNVYHLEGGLYKWFK-EELPEVSEE  240 (240)
Q Consensus       167 ~~~~~~--~i~~~~~IVvyC~~G~~~~~~~~~~~~~~~rs~~aa~~L~~-~G~~nV~~l~GG~~~W~~-~g~pv~~~~  240 (240)
                      ++++..  +++++++||+||++|.              +|..+++.|.. +||+||++|+|||.+|.+ .++||++||
T Consensus        77 ~~~~~~~~gi~~d~~vV~yC~~G~--------------~As~~~~~l~~~~G~~~v~~ydGs~~eW~~~~~~Pv~~g~  140 (141)
T d1uara2          77 LRALYEPLGITKDKDIVVYCRIAE--------------RSSHSWFVLKYLLGYPHVKNYDGSWTEWGNLVGVPIAKGE  140 (141)
T ss_dssp             HHHHHGGGTCCTTSEEEEECSSHH--------------HHHHHHHHHHTTSCCSCEEEESSHHHHHTTSTTCCCBCSC
T ss_pred             HHHHHHHhCCCCCCeEEEEecCcc--------------hHHHHHHHHHHHcCCCCeeEeCCcHHHHhcCCCCCcccCC
Confidence            444433  6799999999999997              99999999986 799999999999999966 699999986

>d1t3ka_ c.46.1.1 (A:) Dual specificity phosphatase Cdc25 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Alpha and beta proteins (a/b)
fold: Rhodanese/Cell cycle control phosphatase
superfamily: Rhodanese/Cell cycle control phosphatase
family: Cell cycle control phosphatase, catalytic domain
domain: Dual specificity phosphatase Cdc25
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=99.88  E-value=4.3e-24  Score=166.91  Aligned_cols=110  Identities=21%  Similarity=0.323  Sum_probs=90.6

Q ss_pred             hcCccccHHHHHHHhcCCCeEEEEcCChhhhhhCCCCCCeeechhhHHhhhhHHHHHHHhhhhhcccCCCCCCcHHHHHH
Q 026302           90 KRVRSVEAKEALRLQKENNFVILDVRPEAEFKEAHPPGAINVQIYRLIKEWTAWDIARRAAFAFFGIFSGTEENPEFLQS  169 (240)
Q Consensus        90 ~~~~~Is~~el~~~l~~~~~~lIDvR~~~ey~~ghIpGAinip~~~l~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~  169 (240)
                      ..++.|+++|+.+++++++++|||||+++||+.||||||+|+|+.++...                           +.+
T Consensus         5 ~~v~~I~~~el~~~~~~~~v~iIDvR~~~e~~~ghIpgAinip~~~~~~~---------------------------~~~   57 (132)
T d1t3ka_           5 RSISYITSTQLLPLHRRPNIAIIDVRDEERNYDGHIAGSLHYASGSFDDK---------------------------ISH   57 (132)
T ss_dssp             SSSEEECTTTTTTCCCCTTEEEEEESCSHHHHSSCCCSSEEECCSSSSTT---------------------------HHH
T ss_pred             cCCCEECHHHHHHHHhCCCeEEEEccCHHHHHhccCcccceeeeeccccc---------------------------ccc
Confidence            45778999999999999899999999999999999999999999765432                           223


Q ss_pred             HHhcCCCCCcEEEEcCCCCCCCCCCCCCCchhhHHHHHHHHHH--------HCCCCceEEccccHHHHHhCCCCCccC
Q 026302          170 VESQLDKDAKIIVACATGGTMKPSQNLPEGQQSRSLIAAYLLV--------LNGYKNVYHLEGGLYKWFKEELPEVSE  239 (240)
Q Consensus       170 ~~~~i~~~~~IVvyC~~G~~~~~~~~~~~~~~~rs~~aa~~L~--------~~G~~nV~~l~GG~~~W~~~g~pv~~~  239 (240)
                      +....++++.|||||..|.+             ++..++..|.        .+||+||++|+||+.+|.++|+|+.+.
T Consensus        58 ~~~~~~~~~~iv~~c~~~~~-------------~~~~aa~~l~~~~~~~l~~~G~~~v~~l~GG~~~W~~~g~pv~~~  122 (132)
T d1t3ka_          58 LVQNVKDKDTLVFHSALSQV-------------RGPTCARRLVNYLDEKKEDTGIKNIMILERGFNGWEASGKPVCRC  122 (132)
T ss_dssp             HHHTCCSCCEEEESSSCCSS-------------SHHHHHHHHHHHHHHSSSCCCSSEEEEESSTTHHHHHHSCSSCCC
T ss_pred             cccccccccceEEEeccccc-------------cchHHHHHHHHHHHHHHHhcCCCEEEEeCChHHHHHHcCCCcccC
Confidence            33567788999999987763             5555554443        479999999999999999999999865

>d1yt8a4 c.46.1.2 (A:243-372) Thiosulfate sulfurtransferase PA2603 {Pseudomonas aeruginosa [TaxId: 287]}

class: Alpha and beta proteins (a/b)
fold: Rhodanese/Cell cycle control phosphatase
superfamily: Rhodanese/Cell cycle control phosphatase
family: Multidomain sulfurtransferase (rhodanese)
domain: Thiosulfate sulfurtransferase PA2603
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=99.87  E-value=1.4e-22  Score=158.28  Aligned_cols=105  Identities=23%  Similarity=0.278  Sum_probs=90.3

Q ss_pred             HHhhhcCccccHHHHHHHhcCC--CeEEEEcCChhhhhhCCCCCCeeechhhHHhhhhHHHHHHHhhhhhcccCCCCCCc
Q 026302           86 LLLQKRVRSVEAKEALRLQKEN--NFVILDVRPEAEFKEAHPPGAINVQIYRLIKEWTAWDIARRAAFAFFGIFSGTEEN  163 (240)
Q Consensus        86 ~l~~~~~~~Is~~el~~~l~~~--~~~lIDvR~~~ey~~ghIpGAinip~~~l~~~~~~~~~~~~~~~~~~g~~~~~~~~  163 (240)
                      ......++.|+++++.+++.++  +++|||||++.||..||||||+|+|+..+....                       
T Consensus        16 ~~~~~~~~~I~~~e~~~~l~~~~~~~~liDvR~~~e~~~ghipgai~~p~~~~~~~~-----------------------   72 (130)
T d1yt8a4          16 VADRAGVERLDLAGLAQWQDEHDRTTYLLDVRTPEEYEAGHLPGSRSTPGGQLVQET-----------------------   72 (130)
T ss_dssp             HHHHHTCEEECHHHHHHHHHCTTSCEEEEECSCHHHHHHCBCTTCEECCHHHHHHSH-----------------------
T ss_pred             HHHHcCCcccCHHHHHHHHHccCCCEEEEECCCcHHHhcCccCCccccccccccccc-----------------------
Confidence            3344678999999999999754  489999999999999999999999998775432                       


Q ss_pred             HHHHHHHHhcCCCCCcEEEEcCCCCCCCCCCCCCCchhhHHHHHHHHHHHCCCCceEEccccHHHHHhCCC
Q 026302          164 PEFLQSVESQLDKDAKIIVACATGGTMKPSQNLPEGQQSRSLIAAYLLVLNGYKNVYHLEGGLYKWFKEEL  234 (240)
Q Consensus       164 ~~~~~~~~~~i~~~~~IVvyC~~G~~~~~~~~~~~~~~~rs~~aa~~L~~~G~~nV~~l~GG~~~W~~~g~  234 (240)
                          ..  ...+++++|||||.+|.              ||..++..|+++|| +|++|+||+.+|..++.
T Consensus        73 ----~~--~~~~~~~~ivl~C~~G~--------------rS~~aa~~L~~~G~-~v~~l~GG~~aw~~~~g  122 (130)
T d1yt8a4          73 ----DH--VASVRGARLVLVDDDGV--------------RANMSASWLAQMGW-QVAVLDGLSEADFSERG  122 (130)
T ss_dssp             ----HH--HCCSBTCEEEEECSSSS--------------HHHHHHHHHHHTTC-EEEEECSCCGGGCCBCS
T ss_pred             ----cc--ccCCccceEEeecCCCc--------------cHHHHHHHHHHcCC-CeEEEcCchHHHHHhcC
Confidence                11  25688999999999997              99999999999999 69999999999988764

>d1okga1 c.46.1.2 (A:7-162) 3-mercaptopyruvate sulfurtransferase {Leishmania major [TaxId: 5664]}

class: Alpha and beta proteins (a/b)
fold: Rhodanese/Cell cycle control phosphatase
superfamily: Rhodanese/Cell cycle control phosphatase
family: Multidomain sulfurtransferase (rhodanese)
domain: 3-mercaptopyruvate sulfurtransferase
species: Leishmania major [TaxId: 5664]

Probab=99.84  E-value=2.3e-22  Score=162.24  Aligned_cols=123  Identities=14%  Similarity=0.141  Sum_probs=90.8

Q ss_pred             cccHHHHHHHhcCCCeEEEEcC--------ChhhhhhCCCCCCeeechhhHHhhhhHHHHHHHhhhhhcccCCCCCCcHH
Q 026302           94 SVEAKEALRLQKENNFVILDVR--------PEAEFKEAHPPGAINVQIYRLIKEWTAWDIARRAAFAFFGIFSGTEENPE  165 (240)
Q Consensus        94 ~Is~~el~~~l~~~~~~lIDvR--------~~~ey~~ghIpGAinip~~~l~~~~~~~~~~~~~~~~~~g~~~~~~~~~~  165 (240)
                      .|+++||.+.++  ++.|||+|        .+.+|.+||||||++++++.........       -...++++..+.+.+
T Consensus         9 lvs~~~L~~~l~--d~~iiD~r~~l~~~~~g~~~Y~~gHIPGA~~~d~~~~l~~~~~~-------~~~~~~lP~~~~~~~   79 (156)
T d1okga1           9 FLDPSEVADHLA--EYRIVDCRYSLKIKDHGSIQYAKEHVKSAIRADVDTNLSKLVPT-------STARHPLPPCAEFID   79 (156)
T ss_dssp             EECHHHHTTCGG--GSEEEECCCCSSSTTTTTTHHHHCEETTCEECCTTTTSCCCCTT-------CCCSSCCCCHHHHHH
T ss_pred             EeCHHHHHHhcC--CCEEEEeeccCCCCcchHHHHHHcCCCCCeEcCHHHhcccccCC-------CCCccccCCHHHHHH
Confidence            699999999886  48999999        4688999999999999986543211000       000112222223333


Q ss_pred             HHHHHHhcCCCCCcEEEEcCCCCCCCCCCCCCCchhhHHHHHHHHHHHCCCCceEEccccHHHHHhCCCCCccCC
Q 026302          166 FLQSVESQLDKDAKIIVACATGGTMKPSQNLPEGQQSRSLIAAYLLVLNGYKNVYHLEGGLYKWFKEELPEVSEE  240 (240)
Q Consensus       166 ~~~~~~~~i~~~~~IVvyC~~G~~~~~~~~~~~~~~~rs~~aa~~L~~~G~~nV~~l~GG~~~W~~~g~pv~~~~  240 (240)
                      .+.++  +|+++++||+||+.+++            ..|.++++.|+.+|+ ||++|+||+.+|+++|+|+++++
T Consensus        80 ~l~~l--GI~~~~~VVvYd~~~g~------------~~A~R~~w~L~~~G~-~v~iLdGG~~aW~~~G~pv~t~~  139 (156)
T d1okga1          80 WCMAN--GMAGELPVLCYDDECGA------------MGGCRLWWMLNSLGA-DAYVINGGFQACKAAGLEMESGE  139 (156)
T ss_dssp             HHHHT--TCSSSSCEEEECSSTTT------------TTHHHHHHHHHHHTC-CEEEETTTTHHHHTTTCCEECSC
T ss_pred             HHHhc--cccCCceEEEEeCCCCc------------hHHHHHHHHHHHcCC-eeEEeCCCHHHHHHCCCCCCCCC
Confidence            33333  78999999999966532            278899999999997 79999999999999999998874

>d1urha2 c.46.1.2 (A:149-268) 3-mercaptopyruvate sulfurtransferase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Rhodanese/Cell cycle control phosphatase
superfamily: Rhodanese/Cell cycle control phosphatase
family: Multidomain sulfurtransferase (rhodanese)
domain: 3-mercaptopyruvate sulfurtransferase
species: Escherichia coli [TaxId: 562]

Probab=99.84  E-value=9.9e-22  Score=150.26  Aligned_cols=103  Identities=30%  Similarity=0.497  Sum_probs=83.4

Q ss_pred             cccHHHHHHHhcCCCeEEEEcCChhhhh-----------hCCCCCCeeechhhHHhhhhHHHHHHHhhhhhcccCCCCCC
Q 026302           94 SVEAKEALRLQKENNFVILDVRPEAEFK-----------EAHPPGAINVQIYRLIKEWTAWDIARRAAFAFFGIFSGTEE  162 (240)
Q Consensus        94 ~Is~~el~~~l~~~~~~lIDvR~~~ey~-----------~ghIpGAinip~~~l~~~~~~~~~~~~~~~~~~g~~~~~~~  162 (240)
                      .++.+|+...+++++++|||+|+++||.           .||||||+|+|+..+...               +    ...
T Consensus         5 ~~~~~ev~~~~~~~~~~liD~R~~~~f~G~~~~~~~~~~~G~Ipga~~~~~~~~~~~---------------~----~~~   65 (120)
T d1urha2           5 VVKVTDVLLASHENTAQIIDARPAARFNAEVDEPRPGLRRGHIPGALNVPWTELVRE---------------G----ELK   65 (120)
T ss_dssp             BCCHHHHHHHHHHTCSEEEECSCHHHHSSCCCC----CCSSSCTTCEECCGGGGBSS---------------S----SBC
T ss_pred             HccHHHHHHHhhCCCcEEEeCCCHHHcCcccCCcccccccccccccchhchhhcccc---------------c----ccC
Confidence            5789999999998899999999999995           799999999998765321               0    111


Q ss_pred             cHHHHHHHH--hcCCCCCcEEEEcCCCCCCCCCCCCCCchhhHHHHHHHHHHHCCCCceEEccccHHHH
Q 026302          163 NPEFLQSVE--SQLDKDAKIIVACATGGTMKPSQNLPEGQQSRSLIAAYLLVLNGYKNVYHLEGGLYKW  229 (240)
Q Consensus       163 ~~~~~~~~~--~~i~~~~~IVvyC~~G~~~~~~~~~~~~~~~rs~~aa~~L~~~G~~nV~~l~GG~~~W  229 (240)
                      .++.+++..  .+++++++||+||.+|.              ||..+++.|+.+||+||++|+|||.+|
T Consensus        66 ~~~~~~~~~~~~g~~~~~~ii~yC~sG~--------------~A~~~~~~L~~lG~~~v~~y~Gs~~eW  120 (120)
T d1urha2          66 TTDELDAIFFGRGVSYDKPIIVSCGSGV--------------TAAVVLLALATLDVPNVKLYDGAWSEW  120 (120)
T ss_dssp             CHHHHHHHHHTTTCCSSSCEEEECCSSS--------------THHHHHHHHHHTTCSSCEEECCSCCC-
T ss_pred             CHHHhhhhhhhcccCccCceEEEccchh--------------HHHHHHHHHHHcCCCCceEcCCChhhC
Confidence            222222222  26799999999999998              999999999999999999999999988

>d1okga2 c.46.1.2 (A:163-301) 3-mercaptopyruvate sulfurtransferase {Leishmania major [TaxId: 5664]}

class: Alpha and beta proteins (a/b)
fold: Rhodanese/Cell cycle control phosphatase
superfamily: Rhodanese/Cell cycle control phosphatase
family: Multidomain sulfurtransferase (rhodanese)
domain: 3-mercaptopyruvate sulfurtransferase
species: Leishmania major [TaxId: 5664]

Probab=99.81  E-value=5e-21  Score=151.21  Aligned_cols=104  Identities=16%  Similarity=0.207  Sum_probs=77.5

Q ss_pred             CCeEEEEcCChhhhh-----------hCCCCCCeeechhhHHhhhhHHHHHHHhhhhhcccCCCCCCcHHHH-HHHH---
Q 026302          107 NNFVILDVRPEAEFK-----------EAHPPGAINVQIYRLIKEWTAWDIARRAAFAFFGIFSGTEENPEFL-QSVE---  171 (240)
Q Consensus       107 ~~~~lIDvR~~~ey~-----------~ghIpGAinip~~~l~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~-~~~~---  171 (240)
                      ++++|||+|+++||.           .||||||+|+|+..+......               ......++.+ +.+.   
T Consensus        11 p~~vlvD~R~~~ef~G~~~~~~~~~~~GHIpgAvnip~~~~~~~~~~---------------~~~~~~~~~l~~~~~~~~   75 (139)
T d1okga2          11 PQAIITDARSADRFASTVRPYAADKMPGHIEGARNLPYTSHLVTRGD---------------GKVLRSEEEIRHNIMTVV   75 (139)
T ss_dssp             TTCCEEECSCHHHHTCCSSCCTTCSSSSCSTTCEECCGGGGEECCSS---------------SCEECCHHHHHHHHHTTC
T ss_pred             CCeEEEeCCCHHHhCCcCCCcccCCcCceeCCCeeccchhhcccccc---------------ccccCCHHHhhhhhhhhh
Confidence            589999999999997           799999999999765322100               0001112222 2221   


Q ss_pred             ---hcCCCCCcEEEEcCCCCCCCCCCCCCCchhhHHHHHHHHHHHCCCCceEEccccHHHHHh-CCCCCccC
Q 026302          172 ---SQLDKDAKIIVACATGGTMKPSQNLPEGQQSRSLIAAYLLVLNGYKNVYHLEGGLYKWFK-EELPEVSE  239 (240)
Q Consensus       172 ---~~i~~~~~IVvyC~~G~~~~~~~~~~~~~~~rs~~aa~~L~~~G~~nV~~l~GG~~~W~~-~g~pv~~~  239 (240)
                         ..++++++||+||.+|.              +|+.+++.|+.+||+||++|+|||.+|.+ .++||+++
T Consensus        76 ~~~~~~~~~~~vV~yC~sG~--------------~Aa~~~~~L~~~G~~~v~vydGsw~eW~~~~~~Pv~~~  133 (139)
T d1okga2          76 QGAGDAADLSSFVFSCGSGV--------------TACINIALVHHLGLGHPYLYCGSWSEYSGLFRPPIMRS  133 (139)
T ss_dssp             C-----CCCTTSEEECSSSS--------------THHHHHHHHHHTTSCCCEECSSHHHHHHHHTHHHHHHH
T ss_pred             hhccCCCCCCeEEEECCCcH--------------HHHHHHHHHHHhCCCCccCCCCCHHHHhCCCCCCeeec
Confidence               14577889999999998              99999999999999999999999999965 68898764

>d1c25a_ c.46.1.1 (A:) CDC25a {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Rhodanese/Cell cycle control phosphatase
superfamily: Rhodanese/Cell cycle control phosphatase
family: Cell cycle control phosphatase, catalytic domain
domain: CDC25a
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.76  E-value=3.1e-19  Score=144.09  Aligned_cols=104  Identities=19%  Similarity=0.384  Sum_probs=79.4

Q ss_pred             cCccccHHHHHHHhcCC------CeEEEEcCChhhhhhCCCCCCeeechhhHHhhhhHHHHHHHhhhhhcccCCCCCCcH
Q 026302           91 RVRSVEAKEALRLQKEN------NFVILDVRPEAEFKEAHPPGAINVQIYRLIKEWTAWDIARRAAFAFFGIFSGTEENP  164 (240)
Q Consensus        91 ~~~~Is~~el~~~l~~~------~~~lIDvR~~~ey~~ghIpGAinip~~~l~~~~~~~~~~~~~~~~~~g~~~~~~~~~  164 (240)
                      .++.|+++++.+++++.      +++|||||++.||..||||||+|+|..+...+.                        
T Consensus        21 ~~k~Is~~~l~~ll~~~~~~~~~~~~IIDvR~~~Ey~~gHI~gAinip~~~~~~~~------------------------   76 (161)
T d1c25a_          21 DLKYISPEIMASVLNGKFANLIKEFVIIDCRYPYEYEGGHIKGAVNLHMEEEVEDF------------------------   76 (161)
T ss_dssp             TSCEECHHHHHHHHTTTTTTTEEEEEEEECSCHHHHHTCEETTCEECCSHHHHHHH------------------------
T ss_pred             CCCccCHHHHHHHHhhhhhcccCCEEEEECCCHHHHHhhhcCCcEEcCcHHHHHHH------------------------
Confidence            45689999999999753      689999999999999999999999976654321                        


Q ss_pred             HHHHHH-HhcCCCCCcEEEEcCCCCCCCCCCCCCCchhhHHHHHHHHHHHC----------CCCceEEccccHHHHHhC
Q 026302          165 EFLQSV-ESQLDKDAKIIVACATGGTMKPSQNLPEGQQSRSLIAAYLLVLN----------GYKNVYHLEGGLYKWFKE  232 (240)
Q Consensus       165 ~~~~~~-~~~i~~~~~IVvyC~~G~~~~~~~~~~~~~~~rs~~aa~~L~~~----------G~~nV~~l~GG~~~W~~~  232 (240)
                       +.+.. .....++..||+||..+.             .|+..++..|+..          ||++|++|+|||.+|.+.
T Consensus        77 -l~~~~~~~~~~~~~~vV~yc~~s~-------------~rs~~~a~~l~~~~~~~~~~~~~g~~~V~vL~GG~~~w~~~  141 (161)
T d1c25a_          77 -LLKKPIVPTDGKRVIVVFHCEFSS-------------ERGPRMCRYVRERDRLGNEYPKLHYPELYVLKGGYKEFFMK  141 (161)
T ss_dssp             -TTTSCCCCCTTSEEEEEEECSSSS-------------SHHHHHHHHHHHHHHHTSSTTCCSSCCEEEETTHHHHHHHH
T ss_pred             -HhhhhhhhhhccCCeEEEEecccc-------------ccHHHHHHHHHHHHHhhccccccCCCeEEEECCcHHHHHHH
Confidence             00000 012234556899998544             2999999998754          999999999999999765

>d2gwfa1 c.46.1.4 (A:181-315) Ubiquitin carboxyl-terminal hydrolase 8, USP8 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Rhodanese/Cell cycle control phosphatase
superfamily: Rhodanese/Cell cycle control phosphatase
family: Ubiquitin carboxyl-terminal hydrolase 8, USP8
domain: Ubiquitin carboxyl-terminal hydrolase 8, USP8
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.73  E-value=7.4e-18  Score=130.61  Aligned_cols=121  Identities=15%  Similarity=0.137  Sum_probs=81.9

Q ss_pred             cccHHHHHHHhcCC--CeEEEEcCChhhhhhCCCCCCeeechhhHHhhhhHHHHHHHhhhhhcccCCCCCCcHHHHHHHH
Q 026302           94 SVEAKEALRLQKEN--NFVILDVRPEAEFKEAHPPGAINVQIYRLIKEWTAWDIARRAAFAFFGIFSGTEENPEFLQSVE  171 (240)
Q Consensus        94 ~Is~~el~~~l~~~--~~~lIDvR~~~ey~~ghIpGAinip~~~l~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~  171 (240)
                      .|+++||.++++++  +++|||+|++.||..||||||+|||...+...........              ..+.......
T Consensus         2 ~Is~~eL~~~l~~~~~~~liiDvR~~~ey~~~hI~gAinip~~~l~~~~~~~~l~~--------------~~~~~~~~~~   67 (135)
T d2gwfa1           2 AITAKELYTMMTDKNISLIIMDARRMQDYQDSCILHSLSVPEEAISPGVTASWIEA--------------HLPDDSKDTW   67 (135)
T ss_dssp             EECHHHHHHHHHSTTSCEEEEECSCHHHHHHSCBTTCEECCGGGCCTTCCHHHHHH--------------TSCHHHHHHH
T ss_pred             eECHHHHHHHHhcCCCCEEEEEecCCccccCCccCCeEEeCHHHcccccchhhhhh--------------hhhHHHHHHH
Confidence            58999999999865  5999999999999999999999999987653211110000              0111222223


Q ss_pred             hcCCCCCcEEEEcCCCCCCCCCCCCCCchhhHHHHHHHHHH-----HCCCCceEEccccHHHHHhCCCC
Q 026302          172 SQLDKDAKIIVACATGGTMKPSQNLPEGQQSRSLIAAYLLV-----LNGYKNVYHLEGGLYKWFKEELP  235 (240)
Q Consensus       172 ~~i~~~~~IVvyC~~G~~~~~~~~~~~~~~~rs~~aa~~L~-----~~G~~nV~~l~GG~~~W~~~g~p  235 (240)
                      ......+.||+||..+....|...      .......+.|.     ..|..+|++|+||+.+|.+. +|
T Consensus        68 ~~~~~~~~iV~yd~~s~~~~~~~~------~~~~~~~~~l~~~~~~~~~~~~v~iL~GG~~~w~~~-yp  129 (135)
T d2gwfa1          68 KKRGNVEYVVLLDWFSSAKDLQIG------TTLRSLKDALFKWESKTVLRNEPLVLEGGYENWLLC-YP  129 (135)
T ss_dssp             HTTTTSSEEEEECSSCCGGGCCTT------CHHHHHHHHHHTSCCSSCCSSCCEEETTHHHHHHHH-CG
T ss_pred             hccCCCCeEEEEeCCCCcccHHHH------HHHHHHHHHHhcccccccCCCcEEEEechHHHHHHh-Ch
Confidence            456778899999998863222211      12233444554     34678999999999999987 54

>d1ymka1 c.46.1.1 (A:377-550) CDC25b {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Rhodanese/Cell cycle control phosphatase
superfamily: Rhodanese/Cell cycle control phosphatase
family: Cell cycle control phosphatase, catalytic domain
domain: CDC25b
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.73  E-value=1.5e-18  Score=141.74  Aligned_cols=107  Identities=21%  Similarity=0.356  Sum_probs=81.4

Q ss_pred             hcCccccHHHHHHHhcCC------CeEEEEcCChhhhhhCCCCCCeeechhhHHhhhhHHHHHHHhhhhhcccCCCCCCc
Q 026302           90 KRVRSVEAKEALRLQKEN------NFVILDVRPEAEFKEAHPPGAINVQIYRLIKEWTAWDIARRAAFAFFGIFSGTEEN  163 (240)
Q Consensus        90 ~~~~~Is~~el~~~l~~~------~~~lIDvR~~~ey~~ghIpGAinip~~~l~~~~~~~~~~~~~~~~~~g~~~~~~~~  163 (240)
                      ..++.|++++|.+++++.      +++|||||++.||..|||+||+|+|...+..+...           ..        
T Consensus        20 ~~~k~Isp~eL~~ll~~~~~~~~~~~lIID~R~~~Ey~~gHI~gAiNi~~~~~~~~~~~-----------~~--------   80 (174)
T d1ymka1          20 QDLKYISPETMVALLTGKFSNIVDKFVIVDCRYPYEYEGGHIKTAVNLPLERDAESFLL-----------KS--------   80 (174)
T ss_dssp             TTSCEECHHHHHHHHTTTTTTTEEEEEEEECSCHHHHHTCEETTCEECCSHHHHHHHHH-----------TT--------
T ss_pred             CCCcEeCHHHHHHHHhhhhhcccCCEEEEECCCchhhhhhhcCCccccCchHHHHHHHH-----------Hh--------
Confidence            446789999999999753      58999999999999999999999999876543100           00        


Q ss_pred             HHHHHHHHhcCCCCCcEEEEcCCCCCCCCCCCCCCchhhHHHHHHHHHHH----------CCCCceEEccccHHHHHhC
Q 026302          164 PEFLQSVESQLDKDAKIIVACATGGTMKPSQNLPEGQQSRSLIAAYLLVL----------NGYKNVYHLEGGLYKWFKE  232 (240)
Q Consensus       164 ~~~~~~~~~~i~~~~~IVvyC~~G~~~~~~~~~~~~~~~rs~~aa~~L~~----------~G~~nV~~l~GG~~~W~~~  232 (240)
                          .......++...||+||..+.             .|+..++..|+.          .||++|++|+||+.+|...
T Consensus        81 ----~~~~~~~~~~~~vV~yc~~s~-------------~r~~~~a~~l~~~~~~~~~~~~~g~~~VyiL~GGf~~f~~~  142 (174)
T d1ymka1          81 ----PIAPCSLDKRVILIFHCEFSS-------------ERGPRMCRFIRERDRAVNDYPSLYYPEMYILKGGYKEFFPQ  142 (174)
T ss_dssp             ----TCCC----CEEEEEEECSSSS-------------SHHHHHHHHHHHHHHHTSSTTCCSCCCEEEETTHHHHHTTT
T ss_pred             ----hhhhhhhccCceEEEEeCCCC-------------chHHHHHHHHHHHHHHhhhccccCCceEEEecCcHHHHHHh
Confidence                000012355677999998665             289999998875          4999999999999999765

>d1hzma_ c.46.1.1 (A:) Erk2 binding domain of Mapk phosphatase mkp-3 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Rhodanese/Cell cycle control phosphatase
superfamily: Rhodanese/Cell cycle control phosphatase
family: Cell cycle control phosphatase, catalytic domain
domain: Erk2 binding domain of Mapk phosphatase mkp-3
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.66  E-value=5.4e-17  Score=128.69  Aligned_cols=126  Identities=17%  Similarity=0.169  Sum_probs=83.3

Q ss_pred             cccHHHHHHHhc--CCCeEEEEcCChhhhhhCCCCCCeeechhhHHhhhhHHHHHHHhhhhhcccCCCCCCcHHHHHHHH
Q 026302           94 SVEAKEALRLQK--ENNFVILDVRPEAEFKEAHPPGAINVQIYRLIKEWTAWDIARRAAFAFFGIFSGTEENPEFLQSVE  171 (240)
Q Consensus        94 ~Is~~el~~~l~--~~~~~lIDvR~~~ey~~ghIpGAinip~~~l~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~  171 (240)
                      .++++|+.+.++  +++++|||||++.||..||||||+|+|+.....+.        ..+... .........+....+ 
T Consensus        17 ~~s~e~L~~~l~~~~~~~lilDvR~~~ey~~~HI~gAini~~~~~~~~~--------~~~~~~-~~~~~~~~~~~~~~~-   86 (154)
T d1hzma_          17 SKTVAWLNEQLELGNERLLLMDCRPQELYESSHIESAINVAIPGIMLRR--------LQKGNL-PVRALFTRGEDRDRF-   86 (154)
T ss_dssp             BSCCCCHHHHHHHCSSSCEEECCSTTHHHHHHTSSSCCCCCCSSHHHHT--------BCCSCC-CTTTTSTTSHHHHHH-
T ss_pred             ccCHHHHHHHHhcCCCCEEEEECCCHHHHhcCCCCCCcccCcHHHHhhh--------ccCCcc-cccccCCcHHHHHHH-
Confidence            688999999886  34789999999999999999999999987654321        000000 011111122333333 


Q ss_pred             hcCCCCCcEEEEcCCCCCCCCCCCCCCchhhHHHHHHHHHHHCCCCceEEccccHHHHHhCCCC
Q 026302          172 SQLDKDAKIIVACATGGTMKPSQNLPEGQQSRSLIAAYLLVLNGYKNVYHLEGGLYKWFKEELP  235 (240)
Q Consensus       172 ~~i~~~~~IVvyC~~G~~~~~~~~~~~~~~~rs~~aa~~L~~~G~~nV~~l~GG~~~W~~~g~p  235 (240)
                      .....+..||+||..+..+..    ......+...+...|...|+ +|++|+|||.+|.+. +|
T Consensus        87 ~~~~~~~~VVvYd~~~~~~~~----~~~~~~~~~~l~~~l~~~~~-~v~iL~GG~~~w~~~-yp  144 (154)
T d1hzma_          87 TRRCGTDTVVLYDESSSDWNE----NTGGESLLGLLLKKLKDEGC-RAFYLEGGFSKFQAE-FS  144 (154)
T ss_dssp             HHSTTSSCEEECCCSSSSSCS----CSSCCSHHHHHHHHHHHTTC-CCEECCCCHHHHHHH-HC
T ss_pred             hhcCCCCeEEEEcCCCchhhh----hHHHHHHHHHHHHHHHhcCC-eEEEEeCcHHHHHHH-Ch
Confidence            456778899999998753211    11122355556666777676 699999999999876 54

>d1c4oa2 c.37.1.19 (A:410-583) Nucleotide excision repair enzyme UvrB {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Tandem AAA-ATPase domain
domain: Nucleotide excision repair enzyme UvrB
species: Thermus thermophilus [TaxId: 274]

Probab=86.91  E-value=0.17  Score=39.14  Aligned_cols=47  Identities=15%  Similarity=0.191  Sum_probs=38.7

Q ss_pred             HHHHHHhcCCCCCcEEEEcCCCCCCCCCCCCCCchhhHHHHHHHHHHHCCCCceEEccccHH
Q 026302          166 FLQSVESQLDKDAKIIVACATGGTMKPSQNLPEGQQSRSLIAAYLLVLNGYKNVYHLEGGLY  227 (240)
Q Consensus       166 ~~~~~~~~i~~~~~IVvyC~~G~~~~~~~~~~~~~~~rs~~aa~~L~~~G~~nV~~l~GG~~  227 (240)
                      +++++.+.+.++.+++|||.+-.              .+..++..|.+.|+. +..|.|++.
T Consensus        20 ll~~i~~~~~~g~r~lvfc~t~~--------------~~~~l~~~L~~~Gi~-a~~~Hg~~~   66 (174)
T d1c4oa2          20 LMEGIRERAARGERTLVTVLTVR--------------MAEELTSFLVEHGIR-ARYLHHELD   66 (174)
T ss_dssp             HHHHHHHHHHTTCEEEEECSSHH--------------HHHHHHHHHHHTTCC-EEEECTTCC
T ss_pred             HHHHHHHHHhcCCcEEEEEcchh--------------HHHHHHHHHHhcCCc-eEEEecccc
Confidence            44555455667889999999986              899999999999996 889999865

>d1xria_ c.45.1.1 (A:) Putative phosphatase At1g05000 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Alpha and beta proteins (a/b)
fold: (Phosphotyrosine protein) phosphatases II
superfamily: (Phosphotyrosine protein) phosphatases II
family: Dual specificity phosphatase-like
domain: Putative phosphatase At1g05000
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=86.70  E-value=0.27  Score=36.30  Aligned_cols=31  Identities=19%  Similarity=0.365  Sum_probs=22.0

Q ss_pred             CCCCcEEEEcCCCCCCCCCCCCCCchhhHHHH-HHHHHHHCCCCc
Q 026302          175 DKDAKIIVACATGGTMKPSQNLPEGQQSRSLI-AAYLLVLNGYKN  218 (240)
Q Consensus       175 ~~~~~IVvyC~~G~~~~~~~~~~~~~~~rs~~-aa~~L~~~G~~n  218 (240)
                      ..+.+|+|+|..|..             |+.. ++..|+..|++.
T Consensus        90 ~~~~pvlvHC~~Gkd-------------RTG~v~a~~l~~~g~~~  121 (151)
T d1xria_          90 EKNHPVLIHCKRGKH-------------RTGCLVGCLRKLQKWCL  121 (151)
T ss_dssp             GGGCSEEEECSSSSS-------------HHHHHHHHHHHHTTBCH
T ss_pred             CCCCCEEEEcCCCch-------------HHHHHHHHHHHHcCCCH
Confidence            456789999999974             6655 445556678753

>d1ywfa1 c.45.1.5 (A:4-275) Phosphotyrosine protein phosphatase PtpB {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: (Phosphotyrosine protein) phosphatases II
superfamily: (Phosphotyrosine protein) phosphatases II
family: Mycobacterial PtpB-like
domain: Phosphotyrosine protein phosphatase PtpB
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=86.48  E-value=1.1  Score=36.29  Aligned_cols=32  Identities=13%  Similarity=0.181  Sum_probs=22.4

Q ss_pred             hcCccccHHHHHHHhcCCCeEEEEcCChhhhh
Q 026302           90 KRVRSVEAKEALRLQKENNFVILDVRPEAEFK  121 (240)
Q Consensus        90 ~~~~~Is~~el~~~l~~~~~~lIDvR~~~ey~  121 (240)
                      ..+..++.++...+.+-+=..|||.|++.|..
T Consensus        28 ~~l~~lt~~d~~~L~~lgI~tViDLRs~~E~~   59 (272)
T d1ywfa1          28 SELSRLDDAGRATLRRLGITDVADLRSSREVA   59 (272)
T ss_dssp             SCCTTCCHHHHHHHHHHTCCEEEECCCHHHHH
T ss_pred             CCcCcCCHHHHHHHHHCCCcEEEECCCHHHHh
Confidence            45556788777665433335899999999965

>d1jl3a_ c.44.1.1 (A:) Arsenate reductase ArsC {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: Phosphotyrosine protein phosphatases I-like
superfamily: Phosphotyrosine protein phosphatases I
family: Low-molecular-weight phosphotyrosine protein phosphatases
domain: Arsenate reductase ArsC
species: Bacillus subtilis [TaxId: 1423]

Probab=85.86  E-value=0.26  Score=35.78  Aligned_cols=38  Identities=16%  Similarity=0.059  Sum_probs=32.9

Q ss_pred             CCcEEEEcCCCCCCCCCCCCCCchhhHHHHHHHHHHHCCCCceEEccccHH
Q 026302          177 DAKIIVACATGGTMKPSQNLPEGQQSRSLIAAYLLVLNGYKNVYHLEGGLY  227 (240)
Q Consensus       177 ~~~IVvyC~~G~~~~~~~~~~~~~~~rs~~aa~~L~~~G~~nV~~l~GG~~  227 (240)
                      +++|+|+|.+..|             ||..|..+|+.++-+++.+.-+|+.
T Consensus         1 ~K~ILFVC~gN~c-------------RSpmAEai~~~~~~~~~~~~Sag~~   38 (137)
T d1jl3a_           1 NKIIYFLCTGNSC-------------RSQMAEGWAKQYLGDEWKVYSAGIE   38 (137)
T ss_dssp             CEEEEEEESSSSS-------------HHHHHHHHHHHHSCTTEEEEEEESS
T ss_pred             CCEEEEEeCCChh-------------HHHHHHHHHHHhCCCCeeecccccc
Confidence            4679999999998             9999999999988778888888865