Citrus Sinensis ID: 026307

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240
Protein Sequence
MGELFDIEGHFGQYVSIFDVKDDTAGLSTTVFGYRCKEMSRTGCGSWSLNLPSTALKSNHPSVNILKSNTLYSPDRLVSGSYLRASPRFCGQIKAPATAAAMEAEQSGGTATNSISNPPMKLLFVEMGVGYDQHGQDVTAAAMRACRDAISSNSIPAFRRGSIPGVSFEQMKLLIKLGVPHSLQQLLDIERVKSVFPYGKILDVEVVDGGLICSSGVHVAELGDKNDDCYIVNAAVYVGY
Secondary Structure (PSIPRED)
cccccccccccccEEEEEEEcccccccEEEEEEEEEccccccccccccccccccccccccccEEccccccEEcccccccccccccccccccccccccHHHHHHHHHccccccccccccccEEEEEEEEcccccccccHHHHHHHHHHHHHHHccccccccccccccccccEEEEEEEEccccccccccHHHHHHHcccccEEEEEEEEcccccccccEEcccccccccEEEEEEEEEEEc
Secondary Structure Prediction (SSPRO)
cccEEEEcccccEEEEEEEEccccccccEEEEcEEccHccccccccEEccccccccccccccccccccccccccccccccccccccccccccEccccEccccccccccccccccccccccEEEEEEEccccccccccHHHHHHHHHHHHHHHcccHHHHEcEcccccHccEEEEEEEEcccccHHcccHHHHHHHcccccEEEEEEEEccEEccccEEEcccccccccEEEEEEEEEEcc
Coil and Loop (DISEMBL)
mgelfdieghfgqyvsifdvkddtaglstTVFGYrckemsrtgcgswslnlpstalksnhpsvnilksntlyspdrlvsgsylrasprfcgqikaPATAAAMEAEqsggtatnsisnppMKLLFVEMgvgydqhgqDVTAAAMRACRDaissnsipafrrgsipgvsFEQMKLLIKLGVphslqqlldiervksvfpygkildvevvdgglicssgvhvaelgdknddcyiVNAAVYVGY
Flexible Loop (DISEMBL)
MGELFDIEGHFGQYVSIFDVKDDTAGLSTTVFGYRCKEMSRTGCGSWSLNLPSTALKSNHPSVNILKSNTLYSPDRLVSGSYLRASPRFCGQIKAPATAAAMEAEQSGgtatnsisnPPMKLLFVEMGVGYDQHGQDVTAAAMRACRDAISsnsipafrrgsIPGVSFEQMKLLIKLGVPHSLQQLLDIERVKSVFPYGKILDVEVVDGGLICSSGVHvaelgdknddcyIVNAAVYVGY
Low Complexity Region (SEG)
MGELFDIEGHFGQYVSIFDVKDDTAGLSTTVFGYRCKEMSRTGCGSWSLNLPSTALKSNHPSVNILKSNTLYSPDRLVSGSYLRASPRFCGQIKapataaameaEQSGGTATNSISNPPMKLLFVEMGVGYDQHGQDVTAAAMRACRDAISSNSIPAFRRGSIPGVSFEQMKLLIKLGVPHSLQQLLDIERVKSVFPYGKILDVEVVDGGLICSSGVHVAELGDKNDDCYIVNAAVYVGY
Disordered region (IsUnstruct)
***LFDIEGHFGQYVSIFDVKDDTAGLSTTVFGYRCKEMSRTGCGSWSLNLPSTAL*****SVNILKSNTLYSPDRLVSGSYLRASPRFCGQI***************************KLLFVEMGVGYDQHGQDVTAAAMRACRDAISSNSIPAFRRGSIPGVSFEQMKLLIKLGVPHSLQQLLDIERVKSVFPYGKILDVEVVDGGLICSSGVHVAELGDKNDDCYIVNAAVYV**
Disordered Region (DISOPRED)
**ELFDIEGHFGQYVSIFDVKDDTAGLSTTVFGYRCKEMSRTGCGSWSLNLPSTALKSNHPSVNILKSNTLYSPDRLV*******************************************LLFVEMGVGYDQHGQDVTAAAMRACRDAISSNSIPAFRRGSIPGVSFEQMKLLIKLGVPHSLQQLLDIERVKSVFPYGKILDVEVVDGGLICSSGVHVAELGDKNDDCYIVNAAVYVGY
Disordered Region (DISEMBL)
MGELFDIEGHFGQYVSIFDVKDDTAGLSTTVFGYRCKEMSRTGCGSWSLNLPSTALKSNHPSVNILKSNTLYSPDRLVSGSYLRASPRFCGQIKAP***************TNSISNPPMKLLFVEMGVGYDQHGQDVTAAAMRACRDAISSNSIPAFRRGSIPGVSFEQMKLLIKLGVPHSLQQLLDIERVKSVFPYGKILDVEVVDGGLICSSGVHVAELGDKNDDCYIVNAAVYVGY
Disordered Region (DISPRO)
*GELFDIEGHFGQYVSIFDVKDDTAGLSTTVFGYRCKEMSRTGCGSWSLNLPSTALKSNHPSVNILKSNTLYSPD**************CGQ************************NPPMKLLFVEMGVGYDQHGQDVTAAAMRACRDAISSNSIPAFRRGSIPGVSFEQMKLLIKLGVPHSLQQLLDIERVKSVFPYGKILDVEVVDGGLICSSGVHVAELGDKNDDCYIVNAAVYVGY
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhoooo
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MGELFDIEGHFGQYVSIFDVKDDTAGLSTTVFGYRCKEMSRTGCGSWSLNLPSTALKSNHPSVNILKSNTLYSPDRLVSGSYLRASPRFCGQIKAPATAAAMEAEQSGGTATNSISNPPMKLLFVEMGVGYDQHGQDVTAAAMRACRDAISSNSIPAFRRGSIPGVSFEQMKLLIKLGVPHSLQQLLDIERVKSVFPYGKILDVEVVDGGLICSSGVHVAELGDKNDDCYIVNAAVYVGY
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

No hits with e-value below 0.001 by BLAST

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	240
449433764	193	PREDICTED: uncharacterized protein LOC10	0.637	0.792	0.811	2e-65
224116924	138	predicted protein [Populus trichocarpa]	0.575	1.0	0.863	3e-62
225443833	194	PREDICTED: uncharacterized protein LOC10	0.620	0.768	0.821	8e-62
388503954	194	unknown [Lotus japonicus]	0.625	0.773	0.758	9e-60
357475655	139	hypothetical protein MTR_4g087740 [Medic	0.579	1.0	0.834	1e-57
351734478	188	uncharacterized protein LOC100527162 [Gl	0.512	0.654	0.894	1e-57
357475657	187	hypothetical protein MTR_4g087750 [Medic	0.558	0.716	0.818	1e-57
388498930	187	unknown [Medicago truncatula]	0.558	0.716	0.818	2e-57
21954066	197	unknown protein [Arabidopsis thaliana]	0.620	0.756	0.726	2e-56
18396927	198	uncharacterized protein [Arabidopsis tha	0.620	0.752	0.726	2e-56

>gi|449433764|ref|XP_004134667.1| PREDICTED: uncharacterized protein LOC101216458 [Cucumis sativus] gi|449479238|ref|XP_004155545.1| PREDICTED: uncharacterized protein LOC101228620 [Cucumis sativus]

 Score =  254 bits (650), Expect = 2e-65,   Method: Compositional matrix adjust.
 Identities = 125/154 (81%), Positives = 134/154 (87%), Gaps = 1/154 (0%)

Query: 87  PRFCGQIKAPATAAAMEAEQSGGTATNSISNPPMKLLFVEMGVGYDQHGQDVTAAAMRAC 146
           PR    IK  A ++ ME EQ G +A    + PPMKLLFVEMGVGYDQHGQDVTAAAMRAC
Sbjct: 41  PRISRLIKVTAVSS-MEVEQGGESAPVDSTVPPMKLLFVEMGVGYDQHGQDVTAAAMRAC 99

Query: 147 RDAISSNSIPAFRRGSIPGVSFEQMKLLIKLGVPHSLQQLLDIERVKSVFPYGKILDVEV 206
           RDAISSNSIPAFRRGSIPGVSF +MKL IKLGVPHSLQQ LD+E+VKSVFPYGKIL+VEV
Sbjct: 100 RDAISSNSIPAFRRGSIPGVSFGEMKLQIKLGVPHSLQQSLDLEKVKSVFPYGKILNVEV 159

Query: 207 VDGGLICSSGVHVAELGDKNDDCYIVNAAVYVGY 240
           VDGGLICSSGVHV E+GDKNDDCYIVNAAVYVGY
Sbjct: 160 VDGGLICSSGVHVEEMGDKNDDCYIVNAAVYVGY 193

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224116924|ref|XP_002317428.1| predicted protein [Populus trichocarpa] gi|222860493|gb|EEE98040.1| predicted protein [Populus trichocarpa]

 Score =  243 bits (621), Expect = 3e-62,   Method: Compositional matrix adjust.
 Identities = 120/139 (86%), Positives = 126/139 (90%), Gaps = 1/139 (0%)

Query: 102 MEAEQSGGTATNSISNPPMKLLFVEMGVGYDQHGQDVTAAAMRACRDAISSNSIPAFRRG 161
           MEAEQSG TA N  SN  MKLLFVEMGVGYDQHGQD+TAAAMRACRDAISSNSIPAFRRG
Sbjct: 1   MEAEQSG-TAVNPSSNASMKLLFVEMGVGYDQHGQDITAAAMRACRDAISSNSIPAFRRG 59

Query: 162 SIPGVSFEQMKLLIKLGVPHSLQQLLDIERVKSVFPYGKILDVEVVDGGLICSSGVHVAE 221
           SIPGV+F QMKL IKLGVPHSLQQ LDIERVKSVFPYG+I+  EVVDGG+ICSSGV V E
Sbjct: 60  SIPGVTFGQMKLQIKLGVPHSLQQSLDIERVKSVFPYGEIVKFEVVDGGMICSSGVLVEE 119

Query: 222 LGDKNDDCYIVNAAVYVGY 240
           +GDKNDDCYIVNAAVYVGY
Sbjct: 120 MGDKNDDCYIVNAAVYVGY 138

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225443833|ref|XP_002266892.1| PREDICTED: uncharacterized protein LOC100253185 [Vitis vinifera]

 Score =  242 bits (618), Expect = 8e-62,   Method: Compositional matrix adjust.
 Identities = 124/151 (82%), Positives = 131/151 (86%), Gaps = 2/151 (1%)

Query: 92  QIKAPATA-AAMEAEQSGGTAT-NSISNPPMKLLFVEMGVGYDQHGQDVTAAAMRACRDA 149
           +I  P  A  AMEAEQSGGTA+  S S   MKLLFVEMGVGYDQHGQDVTAAAMRACRDA
Sbjct: 44  RISFPIRAVTAMEAEQSGGTASIESGSAQSMKLLFVEMGVGYDQHGQDVTAAAMRACRDA 103

Query: 150 ISSNSIPAFRRGSIPGVSFEQMKLLIKLGVPHSLQQLLDIERVKSVFPYGKILDVEVVDG 209
           ISSNSIPAFRRGSIPGV+F+QMKL IKLGVP  LQ  LDIERVKSVFPYGKI++ EVVDG
Sbjct: 104 ISSNSIPAFRRGSIPGVTFDQMKLQIKLGVPRPLQHSLDIERVKSVFPYGKIINFEVVDG 163

Query: 210 GLICSSGVHVAELGDKNDDCYIVNAAVYVGY 240
           GLICSSGV V E+GDKNDDCYIVNAAVYVGY
Sbjct: 164 GLICSSGVQVEEMGDKNDDCYIVNAAVYVGY 194

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|388503954|gb|AFK40043.1| unknown [Lotus japonicus]

 Score =  235 bits (600), Expect = 9e-60,   Method: Compositional matrix adjust.
 Identities = 116/153 (75%), Positives = 131/153 (85%), Gaps = 3/153 (1%)

Query: 88  RFCGQIKAPATAAAMEAEQSGGTATNSISNPPMKLLFVEMGVGYDQHGQDVTAAAMRACR 147
           R     +A ++A  ME E+S  +  +S +   MKLLFVEMGVGYDQHGQ++TAAAMRACR
Sbjct: 45  RISRSTQATSSAPPMEVERSDDSTESSSA---MKLLFVEMGVGYDQHGQNITAAAMRACR 101

Query: 148 DAISSNSIPAFRRGSIPGVSFEQMKLLIKLGVPHSLQQLLDIERVKSVFPYGKILDVEVV 207
           DAISSNSIPAFRRGSIPGVSFEQMKL IK GVPHSLQ+ LDIE+VKSVFPYGKIL+V++V
Sbjct: 102 DAISSNSIPAFRRGSIPGVSFEQMKLQIKPGVPHSLQKSLDIEKVKSVFPYGKILNVDIV 161

Query: 208 DGGLICSSGVHVAELGDKNDDCYIVNAAVYVGY 240
           DGGLI SSGVHV E+GDKNDDCYIVNAAVYVGY
Sbjct: 162 DGGLIYSSGVHVEEMGDKNDDCYIVNAAVYVGY 194

Source: Lotus japonicus

Species: Lotus japonicus

Genus: Lotus

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357475655|ref|XP_003608113.1| hypothetical protein MTR_4g087740 [Medicago truncatula] gi|355509168|gb|AES90310.1| hypothetical protein MTR_4g087740 [Medicago truncatula]

 Score =  229 bits (583), Expect = 1e-57,   Method: Compositional matrix adjust.
 Identities = 116/139 (83%), Positives = 125/139 (89%)

Query: 102 MEAEQSGGTATNSISNPPMKLLFVEMGVGYDQHGQDVTAAAMRACRDAISSNSIPAFRRG 161
           MEAEQS G+  +S S     LLFVEMGVGYDQHGQ++T+AAMRACRDAISSNSIPAFRRG
Sbjct: 1   MEAEQSEGSTDSSSSQTMNHLLFVEMGVGYDQHGQNITSAAMRACRDAISSNSIPAFRRG 60

Query: 162 SIPGVSFEQMKLLIKLGVPHSLQQLLDIERVKSVFPYGKILDVEVVDGGLICSSGVHVAE 221
           SIPGVSF QMKL IKLGVPHSLQQ LDIE+VKSVFPYGKIL+VEVVDGGLICSSGV V E
Sbjct: 61  SIPGVSFGQMKLQIKLGVPHSLQQALDIEKVKSVFPYGKILNVEVVDGGLICSSGVLVEE 120

Query: 222 LGDKNDDCYIVNAAVYVGY 240
           +GDKN+DCYIVNAAVYVGY
Sbjct: 121 MGDKNEDCYIVNAAVYVGY 139

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|351734478|ref|NP_001235791.1| uncharacterized protein LOC100527162 [Glycine max] gi|255631690|gb|ACU16212.1| unknown [Glycine max]

 Score =  229 bits (583), Expect = 1e-57,   Method: Compositional matrix adjust.
 Identities = 110/123 (89%), Positives = 116/123 (94%)

Query: 118 PPMKLLFVEMGVGYDQHGQDVTAAAMRACRDAISSNSIPAFRRGSIPGVSFEQMKLLIKL 177
           P MKLLFVEMGVGYDQHGQD+T AAMRACRDAISSNSIPAFRRGSIPGVSF+QMKL IKL
Sbjct: 66  PLMKLLFVEMGVGYDQHGQDITVAAMRACRDAISSNSIPAFRRGSIPGVSFDQMKLQIKL 125

Query: 178 GVPHSLQQLLDIERVKSVFPYGKILDVEVVDGGLICSSGVHVAELGDKNDDCYIVNAAVY 237
           GVPHSLQ  LDIE+VKSVFPYG+IL+VEVVDGGLICSSGV V E+GDKNDDCYIVNAAVY
Sbjct: 126 GVPHSLQNSLDIEKVKSVFPYGEILNVEVVDGGLICSSGVLVEEMGDKNDDCYIVNAAVY 185

Query: 238 VGY 240
           VGY
Sbjct: 186 VGY 188

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357475657|ref|XP_003608114.1| hypothetical protein MTR_4g087750 [Medicago truncatula] gi|355509169|gb|AES90311.1| hypothetical protein MTR_4g087750 [Medicago truncatula]

 Score =  228 bits (582), Expect = 1e-57,   Method: Compositional matrix adjust.
 Identities = 113/138 (81%), Positives = 123/138 (89%), Gaps = 4/138 (2%)

Query: 104 AEQSGGTATNSISNPPMK-LLFVEMGVGYDQHGQDVTAAAMRACRDAISSNSIPAFRRGS 162
           AE+S G+  +S   PPM  LLFVEMGVGYDQHGQD+TAAA RACRDAI+SNSIPAFRRGS
Sbjct: 53  AERSEGSTDSS---PPMNHLLFVEMGVGYDQHGQDITAAATRACRDAITSNSIPAFRRGS 109

Query: 163 IPGVSFEQMKLLIKLGVPHSLQQLLDIERVKSVFPYGKILDVEVVDGGLICSSGVHVAEL 222
           IPGVSFEQMKL IKLGVP SLQ+ LDIE+VKSVFPYGKIL+VEVVDGGLI SSGVHV E+
Sbjct: 110 IPGVSFEQMKLQIKLGVPRSLQKSLDIEKVKSVFPYGKILNVEVVDGGLISSSGVHVEEM 169

Query: 223 GDKNDDCYIVNAAVYVGY 240
           GDK D+CYIVNAAVYVGY
Sbjct: 170 GDKTDECYIVNAAVYVGY 187

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|388498930|gb|AFK37531.1| unknown [Medicago truncatula]

 Score =  228 bits (580), Expect = 2e-57,   Method: Compositional matrix adjust.
 Identities = 113/138 (81%), Positives = 122/138 (88%), Gaps = 4/138 (2%)

Query: 104 AEQSGGTATNSISNPPMK-LLFVEMGVGYDQHGQDVTAAAMRACRDAISSNSIPAFRRGS 162
           AE+S G+  +S   PPM  LLFVEMGVGYDQHGQD+TAAA RACRDAI+SNSIPAFRRGS
Sbjct: 53  AERSEGSTDSS---PPMNHLLFVEMGVGYDQHGQDITAAATRACRDAITSNSIPAFRRGS 109

Query: 163 IPGVSFEQMKLLIKLGVPHSLQQLLDIERVKSVFPYGKILDVEVVDGGLICSSGVHVAEL 222
           IPGVSFEQMKL IKLGVP SLQ+ LDIE VKSVFPYGKIL+VEVVDGGLI SSGVHV E+
Sbjct: 110 IPGVSFEQMKLQIKLGVPRSLQKSLDIEEVKSVFPYGKILNVEVVDGGLISSSGVHVEEM 169

Query: 223 GDKNDDCYIVNAAVYVGY 240
           GDK D+CYIVNAAVYVGY
Sbjct: 170 GDKTDECYIVNAAVYVGY 187

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|21954066|gb|AAK44094.2|AF370279_1 unknown protein [Arabidopsis thaliana]

 Score =  224 bits (572), Expect = 2e-56,   Method: Compositional matrix adjust.
 Identities = 109/150 (72%), Positives = 124/150 (82%), Gaps = 1/150 (0%)

Query: 92  QIKAPATAAAMEA-EQSGGTATNSISNPPMKLLFVEMGVGYDQHGQDVTAAAMRACRDAI 150
           QI  P    A  A E +  T T  + N  MKLLFVEMGVGYDQHGQDVT+AAM+AC++AI
Sbjct: 48  QISRPIKVIARSAMETTAETITGGVPNNTMKLLFVEMGVGYDQHGQDVTSAAMKACKNAI 107

Query: 151 SSNSIPAFRRGSIPGVSFEQMKLLIKLGVPHSLQQLLDIERVKSVFPYGKILDVEVVDGG 210
           SSNSIPAFRRGSIPGVSF +MKL IKLGVPHSL Q LD+++VKS+FPYGKI++VEVVDGG
Sbjct: 108 SSNSIPAFRRGSIPGVSFGEMKLQIKLGVPHSLHQQLDLDKVKSIFPYGKIVNVEVVDGG 167

Query: 211 LICSSGVHVAELGDKNDDCYIVNAAVYVGY 240
           LICSSGV V E+GD N+DCYIVN AVYVGY
Sbjct: 168 LICSSGVLVEEMGDTNEDCYIVNVAVYVGY 197

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|18396927|ref|NP_564317.1| uncharacterized protein [Arabidopsis thaliana] gi|238478667|ref|NP_001154380.1| uncharacterized protein [Arabidopsis thaliana] gi|21554055|gb|AAM63136.1| unknown [Arabidopsis thaliana] gi|23297690|gb|AAN13008.1| unknown protein [Arabidopsis thaliana] gi|332192912|gb|AEE31033.1| uncharacterized protein [Arabidopsis thaliana] gi|332192914|gb|AEE31035.1| uncharacterized protein [Arabidopsis thaliana]

 Score =  224 bits (572), Expect = 2e-56,   Method: Compositional matrix adjust.
 Identities = 109/150 (72%), Positives = 124/150 (82%), Gaps = 1/150 (0%)

Query: 92  QIKAPATAAAMEA-EQSGGTATNSISNPPMKLLFVEMGVGYDQHGQDVTAAAMRACRDAI 150
           QI  P    A  A E +  T T  + N  MKLLFVEMGVGYDQHGQDVT+AAM+AC++AI
Sbjct: 49  QISRPIKVIARSAMETTAETITGGVPNNTMKLLFVEMGVGYDQHGQDVTSAAMKACKNAI 108

Query: 151 SSNSIPAFRRGSIPGVSFEQMKLLIKLGVPHSLQQLLDIERVKSVFPYGKILDVEVVDGG 210
           SSNSIPAFRRGSIPGVSF +MKL IKLGVPHSL Q LD+++VKS+FPYGKI++VEVVDGG
Sbjct: 109 SSNSIPAFRRGSIPGVSFGEMKLQIKLGVPHSLHQQLDLDKVKSIFPYGKIVNVEVVDGG 168

Query: 211 LICSSGVHVAELGDKNDDCYIVNAAVYVGY 240
           LICSSGV V E+GD N+DCYIVN AVYVGY
Sbjct: 169 LICSSGVLVEEMGDTNEDCYIVNVAVYVGY 198

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

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Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	240
TAIR|locus:2029964	198	AT1G29040 [Arabidopsis thalian	0.566	0.686	0.764	8e-53
UNIPROTKB|Q723D8	119	LMOf2365_0541 "Putative unchar	0.487	0.983	0.4	7.2e-20
UNIPROTKB|Q5LLY4	125	SPO3781 "Uncharacterized prote	0.354	0.68	0.380	2.2e-09
TIGR_CMR|SPO_3781	125	SPO_3781 "conserved hypothetic	0.354	0.68	0.380	2.2e-09
UNIPROTKB|Q5LLY3	114	SPO3782 "Uncharacterized prote	0.362	0.763	0.387	2e-08
TIGR_CMR|SPO_3782	114	SPO_3782 "conserved hypothetic	0.362	0.763	0.387	2e-08
UNIPROTKB|Q5LLP6	125	SPO3876 "Uncharacterized prote	0.345	0.664	0.370	2.8e-07
TIGR_CMR|SPO_3876	125	SPO_3876 "conserved hypothetic	0.345	0.664	0.370	2.8e-07
UNIPROTKB|Q5LLP7	116	SPO3875 "Uncharacterized prote	0.437	0.905	0.305	5.3e-05
TIGR_CMR|SPO_3875	116	SPO_3875 "conserved hypothetic	0.437	0.905	0.305	5.3e-05

TAIR|locus:2029964 AT1G29040 [Arabidopsis thaliana (taxid:3702)]

 Score = 547 (197.6 bits), Expect = 8.0e-53, P = 8.0e-53
 Identities = 104/136 (76%), Positives = 119/136 (87%)

Query:   105 EQSGGTATNSISNPPMKLLFVEMGVGYDQHGQDVTAAAMRACRDAISSNSIPAFRRGSIP 164
             E +  T T  + N  MKLLFVEMGVGYDQHGQDVT+AAM+AC++AISSNSIPAFRRGSIP
Sbjct:    63 ETTAETITGGVPNNTMKLLFVEMGVGYDQHGQDVTSAAMKACKNAISSNSIPAFRRGSIP 122

Query:   165 GVSFEQMKLLIKLGVPHSLQQLLDIERVKSVFPYGKILDVEVVDGGLICSSGVHVAELGD 224
             GVSF +MKL IKLGVPHSL Q LD+++VKS+FPYGKI++VEVVDGGLICSSGV V E+GD
Sbjct:   123 GVSFGEMKLQIKLGVPHSLHQQLDLDKVKSIFPYGKIVNVEVVDGGLICSSGVLVEEMGD 182

Query:   225 KNDDCYIVNAAVYVGY 240
              N+DCYIVN AVYVGY
Sbjct:   183 TNEDCYIVNVAVYVGY 198

GO:0005773 "vacuole" evidence=IDA

GO:0009507 "chloroplast" evidence=IDA

UNIPROTKB|Q723D8 LMOf2365_0541 "Putative uncharacterized protein" [Listeria monocytogenes serotype 4b str. F2365 (taxid:265669)]

 Score = 236 (88.1 bits), Expect = 7.2e-20, P = 7.2e-20
 Identities = 48/120 (40%), Positives = 79/120 (65%)

Query:   121 KLLFVEMGVGYDQHGQDVTAAAMRACRDAISSNSIPAFRRGSIPGVSFEQMKLLIKLGVP 180
             ++LF++ G G D HGQ++T AA RA R+AI +NS+P  + G +P    + M + IKL +P
Sbjct:     3 QILFIQTGFGVDVHGQNITKAAERAVRNAIFTNSMPGIQ-GLLPDGDLQNMVVNIKLALP 61

Query:   181 HSLQQLLDIERVKSVFPYGKILDVEVVDGGLICSSGVHVAELGDKNDDCYIVNAAVYVGY 240
                ++ LD + ++++ PYG +  +E + GG++ +SG+ + +  DKND  YIVNA+V  GY
Sbjct:    62 CD-EEKLDEDTIRAIIPYGTVT-IEKMAGGMMTTSGIFLEDKEDKNDLMYIVNASVETGY 119

GO:0003674 "molecular_function" evidence=ND

GO:0005575 "cellular_component" evidence=ND

GO:0008150 "biological_process" evidence=ND

UNIPROTKB|Q5LLY4 SPO3781 "Uncharacterized protein" [Ruegeria pomeroyi DSS-3 (taxid:246200)]

 Score = 138 (53.6 bits), Expect = 2.2e-09, P = 2.2e-09
 Identities = 35/92 (38%), Positives = 51/92 (55%)

Query:   120 MKLLFVEMGVGYDQHGQDVTAAAMRACRDAISSNSIPAFRRGSIPGVSFEQMKLLIKLGV 179
             MK L  E+G+G D HG D T AA+R   DAI  +S+  F     P     QM++ + +GV
Sbjct:     1 MKPLICELGMGADVHGHDYTKAALRGVSDAIRHSSLTLFYAYKHPS----QMRVEVTVGV 56

Query:   180 PHSLQQLLDIERVKSVFPYGKILDVEVVDGGL 211
             P    + +D + V +  P+G + +V VV GGL
Sbjct:    57 PEP--EKVDKKAVAAALPFGAV-EVTVVQGGL 85

GO:0003674 "molecular_function" evidence=ND

GO:0005575 "cellular_component" evidence=ND

GO:0008150 "biological_process" evidence=ND

TIGR_CMR|SPO_3781 SPO_3781 "conserved hypothetical protein" [Ruegeria pomeroyi DSS-3 (taxid:246200)]

 Score = 138 (53.6 bits), Expect = 2.2e-09, P = 2.2e-09
 Identities = 35/92 (38%), Positives = 51/92 (55%)

Query:   120 MKLLFVEMGVGYDQHGQDVTAAAMRACRDAISSNSIPAFRRGSIPGVSFEQMKLLIKLGV 179
             MK L  E+G+G D HG D T AA+R   DAI  +S+  F     P     QM++ + +GV
Sbjct:     1 MKPLICELGMGADVHGHDYTKAALRGVSDAIRHSSLTLFYAYKHPS----QMRVEVTVGV 56

Query:   180 PHSLQQLLDIERVKSVFPYGKILDVEVVDGGL 211
             P    + +D + V +  P+G + +V VV GGL
Sbjct:    57 PEP--EKVDKKAVAAALPFGAV-EVTVVQGGL 85

GO:0003674 "molecular_function" evidence=ND

GO:0005575 "cellular_component" evidence=ND

GO:0008150 "biological_process" evidence=ND

UNIPROTKB|Q5LLY3 SPO3782 "Uncharacterized protein" [Ruegeria pomeroyi DSS-3 (taxid:246200)]

 Score = 130 (50.8 bits), Expect = 2.0e-08, P = 2.0e-08
 Identities = 36/93 (38%), Positives = 51/93 (54%)

Query:   119 PMKLLFVEMGVGYDQHGQDVTAAAMRACRDAISSNSIPAFRRGSIPGVSFEQMKLLIKLG 178
             P     V+MG+G D  GQD T AA RA  DA+  N + A     +P    ++M + I++G
Sbjct:     2 PKTQFAVQMGMGTDLKGQDYTKAAARAVHDALHRNFLTAGAAFDLP---LDRMIVDIRVG 58

Query:   179 VPHSLQQLLDIERVKSVFPYGKILDVEVVDGGL 211
             V     + +D+E VKS  P G++  VE V GGL
Sbjct:    59 VGRP--EAVDLEVVKSEAPVGRVT-VEAVQGGL 88

GO:0003674 "molecular_function" evidence=ND

GO:0005575 "cellular_component" evidence=ND

GO:0008150 "biological_process" evidence=ND

TIGR_CMR|SPO_3782 SPO_3782 "conserved hypothetical protein" [Ruegeria pomeroyi DSS-3 (taxid:246200)]

 Score = 130 (50.8 bits), Expect = 2.0e-08, P = 2.0e-08
 Identities = 36/93 (38%), Positives = 51/93 (54%)

Query:   119 PMKLLFVEMGVGYDQHGQDVTAAAMRACRDAISSNSIPAFRRGSIPGVSFEQMKLLIKLG 178
             P     V+MG+G D  GQD T AA RA  DA+  N + A     +P    ++M + I++G
Sbjct:     2 PKTQFAVQMGMGTDLKGQDYTKAAARAVHDALHRNFLTAGAAFDLP---LDRMIVDIRVG 58

Query:   179 VPHSLQQLLDIERVKSVFPYGKILDVEVVDGGL 211
             V     + +D+E VKS  P G++  VE V GGL
Sbjct:    59 VGRP--EAVDLEVVKSEAPVGRVT-VEAVQGGL 88

GO:0003674 "molecular_function" evidence=ND

GO:0005575 "cellular_component" evidence=ND

GO:0008150 "biological_process" evidence=ND

UNIPROTKB|Q5LLP6 SPO3876 "Uncharacterized protein" [Ruegeria pomeroyi DSS-3 (taxid:246200)]

 Score = 120 (47.3 bits), Expect = 2.8e-07, P = 2.8e-07
 Identities = 33/89 (37%), Positives = 49/89 (55%)

Query:   123 LFVEMGVGYDQHGQDVTAAAMRACRDAISSNSIPAFRRGSIPGVSFEQMKLLIKLGVPHS 182
             + +EMG G D +GQD T AA RA +DA+  +SI  F +    G+   QM++ + +GV   
Sbjct:     6 MILEMGTGNDLYGQDYTKAARRAVQDALHHSSITLFSK---LGIDHGQMRVQVTIGVQRP 62

Query:   183 LQQLLDIERVKSVFPYGKILDVEVVDGGL 211
              Q  +D + V +  P G +  V  V GGL
Sbjct:    63 DQ--VDCDAVAAELPRG-VATVCAVLGGL 88

GO:0003674 "molecular_function" evidence=ND

GO:0005575 "cellular_component" evidence=ND

GO:0008150 "biological_process" evidence=ND

TIGR_CMR|SPO_3876 SPO_3876 "conserved hypothetical protein" [Ruegeria pomeroyi DSS-3 (taxid:246200)]

 Score = 120 (47.3 bits), Expect = 2.8e-07, P = 2.8e-07
 Identities = 33/89 (37%), Positives = 49/89 (55%)

Query:   123 LFVEMGVGYDQHGQDVTAAAMRACRDAISSNSIPAFRRGSIPGVSFEQMKLLIKLGVPHS 182
             + +EMG G D +GQD T AA RA +DA+  +SI  F +    G+   QM++ + +GV   
Sbjct:     6 MILEMGTGNDLYGQDYTKAARRAVQDALHHSSITLFSK---LGIDHGQMRVQVTIGVQRP 62

Query:   183 LQQLLDIERVKSVFPYGKILDVEVVDGGL 211
              Q  +D + V +  P G +  V  V GGL
Sbjct:    63 DQ--VDCDAVAAELPRG-VATVCAVLGGL 88

GO:0003674 "molecular_function" evidence=ND

GO:0005575 "cellular_component" evidence=ND

GO:0008150 "biological_process" evidence=ND

UNIPROTKB|Q5LLP7 SPO3875 "Uncharacterized protein" [Ruegeria pomeroyi DSS-3 (taxid:246200)]

 Score = 100 (40.3 bits), Expect = 5.3e-05, P = 5.3e-05
 Identities = 36/118 (30%), Positives = 58/118 (49%)

Query:   123 LFVEMGVGYDQHGQDVTAAAMRACRDAISSNSIPAFRRGSIPGVSFEQMKLLIKLGVPHS 182
             + VE G+G     +D T AA+RA +DA+  NS+       + G   E M +  ++GV   
Sbjct:     6 VLVEFGMGSSLRREDYTEAALRALKDALWHNSV---NMAELFGFPKEAMIVDAEIGVQRP 62

Query:   183 LQQLLDIERVKSVFPYGKILDVEVVDGGLICSSGVHVAELGDKNDDCYIVNAAVYVGY 240
               + +D   + +VFPYG+  ++ V  GGL     +   + G +     I NAAV V +
Sbjct:    63 --EAVDNVALAAVFPYGQP-NITVRQGGL----DIDKPQGGGRT---VIANAAVVVSF 110

GO:0003674 "molecular_function" evidence=ND

GO:0005575 "cellular_component" evidence=ND

GO:0008150 "biological_process" evidence=ND

TIGR_CMR|SPO_3875 SPO_3875 "conserved hypothetical protein" [Ruegeria pomeroyi DSS-3 (taxid:246200)]

 Score = 100 (40.3 bits), Expect = 5.3e-05, P = 5.3e-05
 Identities = 36/118 (30%), Positives = 58/118 (49%)

Query:   123 LFVEMGVGYDQHGQDVTAAAMRACRDAISSNSIPAFRRGSIPGVSFEQMKLLIKLGVPHS 182
             + VE G+G     +D T AA+RA +DA+  NS+       + G   E M +  ++GV   
Sbjct:     6 VLVEFGMGSSLRREDYTEAALRALKDALWHNSV---NMAELFGFPKEAMIVDAEIGVQRP 62

Query:   183 LQQLLDIERVKSVFPYGKILDVEVVDGGLICSSGVHVAELGDKNDDCYIVNAAVYVGY 240
               + +D   + +VFPYG+  ++ V  GGL     +   + G +     I NAAV V +
Sbjct:    63 --EAVDNVALAAVFPYGQP-NITVRQGGL----DIDKPQGGGRT---VIANAAVVVSF 110


Parameters:
  V=100
  filter=SEG
  E=0.001

  ctxfactor=1.00

  Query                        -----  As Used  -----    -----  Computed  ----
  Frame  MatID Matrix name     Lambda    K       H      Lambda    K       H
   +0      0   BLOSUM62        0.319   0.136   0.404    same    same    same
               Q=9,R=2         0.244   0.0300  0.180     n/a     n/a     n/a

  Query
  Frame  MatID  Length  Eff.Length     E     S W   T  X   E2     S2
   +0      0      240       230   0.00083  113 3  11 22  0.41    33
                                                     32  0.42    36


Statistics:

  Database:  /share/blast/go-seqdb.fasta
   Title:  go_20130330-seqdb.fasta
   Posted:  5:47:42 AM PDT Apr 1, 2013
   Created:  5:47:42 AM PDT Apr 1, 2013
   Format:  XDF-1
   # of letters in database:  169,044,731
   # of sequences in database:  368,745
   # of database sequences satisfying E:  10
  No. of states in DFA:  599 (64 KB)
  Total size of DFA:  175 KB (2102 KB)
  Time to generate neighborhood:  0.00u 0.00s 0.00t   Elapsed:  00:00:00
  No. of threads or processors used:  24
  Search cpu time:  17.42u 0.13s 17.55t   Elapsed:  00:00:01
  Total cpu time:  17.42u 0.13s 17.55t   Elapsed:  00:00:01
  Start:  Fri May 10 07:00:39 2013   End:  Fri May 10 07:00:40 2013

GO:0003674 "molecular_function" evidence=ND

GO:0005575 "cellular_component" evidence=ND

GO:0008150 "biological_process" evidence=ND

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input: estExt_Genewise1_v1.C_LG_XI3352 hypothetical protein (139 aa) (Populus trichocarpa)

Predicted Functional Partners:

Sorry, there are no predicted associations at the current settings.

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	240
TIGR02058	116	TIGR02058, lin0512_fam, conserved hypothetical pro	4e-58
pfam09585	113	pfam09585, Lin0512_fam, Conserved hypothetical pro	2e-50

>gnl|CDD|131113 TIGR02058, lin0512_fam, conserved hypothetical protein

 Score =  179 bits (456), Expect = 4e-58
 Identities = 66/119 (55%), Positives = 87/119 (73%), Gaps = 3/119 (2%)

Query: 121 KLLFVEMGVGYDQHGQDVTAAAMRACRDAISSNSIPAFRRGSIPGVSFEQMKLLIKLGVP 180
           K+LF+EMG+G DQHGQ++T AAMRA R+AI+SNS+P     S+P  S  +M + +KL VP
Sbjct: 1   KILFIEMGMGVDQHGQNITKAAMRAVRNAIASNSMPGIWE-SLPDSSLNEMIVEVKLAVP 59

Query: 181 HSLQQLLDIERVKSVFPYGKILDVEVVDGGLICSSGVHVAELGDKNDDCYIVNAAVYVG 239
           + L Q LD ++VK++ PYG +  VEV DGG+I SSG+ + E  DKND  YIVNAAV VG
Sbjct: 60  YDLDQ-LDEDKVKAIIPYGTV-TVEVEDGGMITSSGIALEEKNDKNDLMYIVNAAVEVG 116

This family consists of few members, broadly distributed. It occurs so far in several Firmicutes (twice in Oceanobacillus), one Cyanobacterium, one alpha Proteobacterium, and (with a long prefix) in plants. The function is unknown. The alignment includes a perfectly conserved motif GxGxDxHG near the N-terminus [Hypothetical proteins, Conserved]. Length = 116

>gnl|CDD|118121 pfam09585, Lin0512_fam, Conserved hypothetical protein (Lin0512_fam)

 Score =  159 bits (405), Expect = 2e-50
 Identities = 61/119 (51%), Positives = 76/119 (63%), Gaps = 6/119 (5%)

Query: 121 KLLFVEMGVGYDQHGQDVTAAAMRACRDAISSNSIPAFRRGSIPGVSFEQMKLLIKLGVP 180
           K L VEMG+G D HGQD T AA RA +DAI  NS+P      I G+  E+M++ +K+GVP
Sbjct: 1   KRLIVEMGMGVDLHGQDYTKAAKRAVKDAIWHNSLPGLFE--ILGLDLEEMRVQVKVGVP 58

Query: 181 HSLQQLLDIERVKSVFPYGKILDVEVVDGGLICSSGVHVAELGDKNDDCYIVNAAVYVG 239
               + +D E VK+V PYG +  VEVVDGGL   SG+ + E GDK D   I NAAV VG
Sbjct: 59  RP--EQVDEEAVKAVLPYGTV-TVEVVDGGLRT-SGIDIEEPGDKGDLTVIANAAVEVG 113

This family consists of few members, broadly distributed. It occurs so far in several Firmicutes (twice in Oceanobacillus), one Cyanobacterium, one alpha Proteobacterium, and (with a long prefix) in plants. The function is unknown. The alignment includes a well conserved motif GxGxDxHG near the N-terminus. Length = 113

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	240
TIGR02058	116	lin0512_fam conserved hypothetical protein. This f	100.0
PF09585	113	Lin0512_fam: Conserved hypothetical protein (Lin05	100.0

>TIGR02058 lin0512_fam conserved hypothetical protein

Probab=100.00  E-value=1.4e-56  Score=361.30  Aligned_cols=115  Identities=56%  Similarity=0.882  Sum_probs=108.8

Q ss_pred             eEEEEEeeccccCCCCCHHHHHHHHHHhHHhhCCccccccCccCCCCCCCeEEEEEEeecCCCc-ccccHHHHhhhcCCC
Q 026307          121 KLLFVEMGVGYDQHGQDVTAAAMRACRDAISSNSIPAFRRGSIPGVSFEQMKLLIKLGVPHSLQ-QLLDIERVKSVFPYG  199 (240)
Q Consensus       121 KRlfIEmGMG~DlHGQD~TKAA~RAVrDAI~hNSIp~~~~~~IpG~d~~~MkV~VkIGVP~~~P-e~VD~eaVkavfPYG  199 (240)
                      ||||||||||+|||||||||||+|||||||||||||++++ .+++.++++|+|+|+||||+  | |+||+|+|+++||||
T Consensus         1 krl~iEmGmG~DlhGqD~TkAA~RAvrDAI~hnsipg~~~-~~~~~~~~~M~v~V~igVp~--p~e~vD~e~v~~~~PyG   77 (116)
T TIGR02058         1 KILFIEMGMGVDQHGQNITKAAMRAVRNAIASNSMPGIWE-SLPDSSLNEMIVEVKLAVPY--DLDQLDEDKVKAIIPYG   77 (116)
T ss_pred             CeEEEEecccccccCccHHHHHHHHHHHHHhhccchhHHH-hcCCCChhheEEEEEEECCC--chHhcCHHHHHHhCCCC
Confidence            7999999999999999999999999999999999998885 44443459999999999999  8 999999999999999


Q ss_pred             ceeeEEEEcCCcccccCceeccCCCCCCcEEEEEEEEEEe
Q 026307          200 KILDVEVVDGGLICSSGVHVAELGDKNDDCYIVNAAVYVG  239 (240)
Q Consensus       200 ~v~tVeVV~GGL~v~sGI~ipe~GDknD~~vIAnAAV~Vg  239 (240)
                      ++ +|+|++|||+++|||+||++||+||+||||||||+||
T Consensus        78 ~~-~v~vv~GGL~v~sGi~i~~~~d~~d~~~Ia~AaV~Vg  116 (116)
T TIGR02058        78 TV-TVEVEDGGMITSSGIALEEKNDKNDLMYIVNAAVEVG  116 (116)
T ss_pred             ee-EEEEEcCCeEcccCccccCCCCCCCcEEEEEEEEEeC
Confidence            97 9999999999999999999999999999999999997

This family consists of few members, broadly distributed. It occurs so far in several Firmicutes (twice in Oceanobacillus), one Cyanobacterium, one alpha Proteobacterium, and (with a long prefix) in plants. The function is unknown. The alignment includes a perfectly conserved motif GxGxDxHG near the N-terminus.

>PF09585 Lin0512_fam: Conserved hypothetical protein (Lin0512_fam); InterPro: IPR011719 This family consists of few members, broadly distributed

Probab=100.00  E-value=3.4e-56  Score=357.53  Aligned_cols=113  Identities=59%  Similarity=0.935  Sum_probs=109.2

Q ss_pred             eEEEEEeeccccCCCCCHHHHHHHHHHhHHhhCCccccccCccCCCCCCCeEEEEEEeecCCCcccccHHHHhhhcCCCc
Q 026307          121 KLLFVEMGVGYDQHGQDVTAAAMRACRDAISSNSIPAFRRGSIPGVSFEQMKLLIKLGVPHSLQQLLDIERVKSVFPYGK  200 (240)
Q Consensus       121 KRlfIEmGMG~DlHGQD~TKAA~RAVrDAI~hNSIp~~~~~~IpG~d~~~MkV~VkIGVP~~~Pe~VD~eaVkavfPYG~  200 (240)
                      ||||||||||+|||||||||||+|||||||||||||++++  ++|+++++|+|+|+||||+  ||+||+|+||++||||+
T Consensus         1 kr~~iE~GmG~DlhGqD~TkAA~RAv~DAI~~nslp~l~~--~~~~~~~~M~v~V~igVp~--pe~vD~e~v~~~~PyG~   76 (113)
T PF09585_consen    1 KRLFIEMGMGNDLHGQDYTKAAVRAVRDAISHNSLPGLFE--ILGLDLDDMKVEVKIGVPR--PEKVDIEAVKAVFPYGQ   76 (113)
T ss_pred             CeEEEEecccccccCCcHHHHHHHHHHHHHhhcchHHHHH--HcCCChHHEEEEEEEeCCC--ccccCHHHHHHhCCCCC
Confidence            7999999999999999999999999999999999999885  4666999999999999999  99999999999999999


Q ss_pred             eeeEEEEcCCcccccCceeccCCCCCCcEEEEEEEEEEe
Q 026307          201 ILDVEVVDGGLICSSGVHVAELGDKNDDCYIVNAAVYVG  239 (240)
Q Consensus       201 v~tVeVV~GGL~v~sGI~ipe~GDknD~~vIAnAAV~Vg  239 (240)
                      + +|+||+|||.+ +||.+|++||+||++|||||||+||
T Consensus        77 ~-~v~vv~GGl~~-sGi~i~~~~d~~d~~vIa~AaV~V~  113 (113)
T PF09585_consen   77 V-TVEVVKGGLIT-SGIDIPEPGDKNDDIVIANAAVTVG  113 (113)
T ss_pred             c-eEEEEcCCccc-cCcccCCCCCCCCcEEEEEEEEEeC
Confidence            5 99999999998 9999999999999999999999997

It occurs so far in several Firmicutes (twice in Oceanobacillus), one Cyanobacterium, one alpha Proteobacterium, and (with a long prefix) in plants. The function is unknown. The alignment includes a perfectly conserved motif GxGxDxHG near the N terminus.

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	240
3c8l_A	122	Crystal Structure Of A Ftsz-Like Protein Of Unknown		6e-13

>pdb|3C8L|A Chain A, Crystal Structure Of A Ftsz-Like Protein Of Unknown Function (Npun_r1471) From Nostoc Punctiforme Pcc 73102 At 1.22 A Resolution Length = 122

Iteration: 1
 Score = 70.9 bits (172), Expect = 6e-13,   Method: Compositional matrix adjust.
 Identities = 49/120 (40%), Positives = 68/120 (56%), Gaps = 9/120 (7%)
Query: 121 KLLFVEMGVGYDQHGQDVTAAAMRACRDAISSNSIPAFRRGSIPGVSFEQMKLL-IKLGV 179
           K L +E G G DQHGQ+ T AA RA R+AI+ N++P      + G+S     ++ +++ V
Sbjct: 5   KRLIIEXGXGIDQHGQEPTIAASRAVRNAIAHNALPGV--WEVAGLSHPNEXIIEVQVAV 62
Query: 180 PHSLQQLLDIERVKSVFPYG-KILDVEVVDGGLICSSGVHVAELGDKNDDCYIVNAAVYV 238
           P+  Q  +  E V +V P+G K L VE   GG I   G  + EL DKND+  I  AAV V
Sbjct: 63  PYPEQ--VREEEVLAVLPFGRKTLTVE--SGGXIV-QGRAIPELNDKNDEXLIAIAAVTV 117

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	240
3c8l_A	122	FTSZ-like protein of unknown function; structural	2e-44
1qzv_F	154	Plant photosystem I: subunit PSAF; photosynthesis,	3e-04

>3c8l_A FTSZ-like protein of unknown function; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE; 1.22A {Nostoc punctiforme} Length = 122

 Score =  144 bits (365), Expect = 2e-44
 Identities = 45/122 (36%), Positives = 67/122 (54%), Gaps = 5/122 (4%)

Query: 119 PMKLLFVEMGVGYDQHGQDVTAAAMRACRDAISSNSIPAFRRGSIPGVSFEQMKLLIKLG 178
             K L +EMG+G DQHGQ+ T AA RA R+AI+ N++P             +M + +++ 
Sbjct: 3   ARKRLIIEMGMGIDQHGQEPTIAASRAVRNAIAHNALPGVWE-VAGLSHPNEMIIEVQVA 61

Query: 179 VPHSLQQLLDIERVKSVFPYGKILDVEVVDGGLICSSGVHVAELGDKNDDCYIVNAAVYV 238
           VP+   + +  E V +V P+G+   + V  GG+I   G  + EL DKND+  I  AAV V
Sbjct: 62  VPYP--EQVREEEVLAVLPFGRK-TLTVESGGMIV-QGRAIPELNDKNDEMLIAIAAVTV 117

Query: 239 GY 240
             
Sbjct: 118 LI 119

>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant photosynthetic reaction center, peripheral antenna; HET: CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1 Length = 154

 Score = 39.2 bits (90), Expect = 3e-04
 Identities = 16/51 (31%), Positives = 17/51 (33%), Gaps = 26/51 (50%)

Query: 55  ALKSNHPSVNILKSNTLYSPDRLVSGSYLRASPRFCGQIKAPATA--AAME 103
           ALK    S   LK   LY+ D                   APA A  A ME
Sbjct: 21  ALKKLQAS---LK---LYADD------------------SAPALAIKATME 47

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	240
3c8l_A	122	FTSZ-like protein of unknown function; structural	100.0

>3c8l_A FTSZ-like protein of unknown function; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE; 1.22A {Nostoc punctiforme}

Probab=100.00  E-value=5.7e-57  Score=364.93  Aligned_cols=116  Identities=40%  Similarity=0.622  Sum_probs=112.2

Q ss_pred             CceEEEEEeeccccCCCCCHHHHHHHHHHhHHhhCCccccccCccCCC-CCCCeEEEEEEeecCCCcccccHHHHhhhcC
Q 026307          119 PMKLLFVEMGVGYDQHGQDVTAAAMRACRDAISSNSIPAFRRGSIPGV-SFEQMKLLIKLGVPHSLQQLLDIERVKSVFP  197 (240)
Q Consensus       119 ~mKRlfIEmGMG~DlHGQD~TKAA~RAVrDAI~hNSIp~~~~~~IpG~-d~~~MkV~VkIGVP~~~Pe~VD~eaVkavfP  197 (240)
                      .|||||||||||+|||||||||||+|||||||||||||++++  ++|+ ++++|+|+|+||||+  ||+||.|+||++||
T Consensus         3 ~~kr~~iEmGmG~DlhGqD~TkAA~RAvrDAI~~nslp~~~~--~~g~~~~~~M~V~V~vgVp~--pe~vD~e~v~a~lP   78 (122)
T 3c8l_A            3 ARKRLIIEMGMGIDQHGQEPTIAASRAVRNAIAHNALPGVWE--VAGLSHPNEMIIEVQVAVPY--PEQVREEEVLAVLP   78 (122)
T ss_dssp             CEEEEEEEEEEEEESSSSCHHHHHHHHHHHHHTTCCCSSHHH--HHTCSSGGGSEEEEEEEESS--GGGCCHHHHHTTSC
T ss_pred             ccEEEEEEecccccccCccHHHHHHHHHHHHHhhhcchhHHH--HCCCCChhceEEEEEEeCCC--hhhcCHHHHHhhCC
Confidence            469999999999999999999999999999999999999994  6887 799999999999999  99999999999999


Q ss_pred             CCceeeEEEEcCCcccccCceeccCCCCCCcEEEEEEEEEEeC
Q 026307          198 YGKILDVEVVDGGLICSSGVHVAELGDKNDDCYIVNAAVYVGY  240 (240)
Q Consensus       198 YG~v~tVeVV~GGL~v~sGI~ipe~GDknD~~vIAnAAV~Vgy  240 (240)
                      ||++ +|+||+|||++ |||+||+++|+||++|||||||+|+|
T Consensus        79 yG~~-~v~vv~GGl~~-sGi~i~~~~d~~d~~~Ia~AaV~V~~  119 (122)
T 3c8l_A           79 FGRK-TLTVESGGMIV-QGRAIPELNDKNDEMLIAIAAVTVLI  119 (122)
T ss_dssp             SSEE-EEEEEECBEEE-ECCCCGGGTCCSSEEEEEEEEEEEEE
T ss_pred             CCce-EEEEEeCCccc-ccccccccCCCCCcEEEEEEEEEEec
Confidence            9997 99999999999 99999999999999999999999997

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

No hit with probability above 80.00