Citrus Sinensis ID: 026315


Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240
MFDDLLEYRNDERCPARGFYTYDAFIEAAQAFPGFGNSGNETMRKREIAAFFAQTGHETTGGWPDAPGGEYAWGYCFISEVSPPSDYCDPNYPCRGKYYGRGPIQLSWNYNYLRCGEGLGLGEELLNNPDLLATDPVLSFKSAIWFWMTAQPPKPSCHEVIIDEWKPSANDVNAGRLPGYGLTTNIINGGIECGQGGNAAVRNRIGFFTTFCGKFGIQPGDSLDCYNQRPYGLNLMAQSM
cHHHHHcccccccccccccccHHHHHHHHHHcccccccccHHHHHHHHHHHHHHHccccccccccccccccccccEEEcccccccccccccccccccccccccccccccHHHHHHHcccccccccccccccccccHHHHHHHcEEEEEcccccccccHHHHHccccccccccccccccccccEEEEEEccccccccccHHHHcHHHHHHHHHHHHccccccccccccccccccccccccc
HHHHHccccccccccccccccHHHHHHHHcccccccccccHHHHHHHHHHHHHHHHHHcccccccccccHHHccccccEcccccccccccccccccccccccEccccEccHHHHHHHHHHHcccccccccHHHHcHHHHHHHHHHHHHccEccEccHHHHHcccccccHHHHHccccccHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHcccccccccccccccccccccHccc
MFDDLLeyrndercpargfyTYDAFIEAAqafpgfgnsgneTMRKREIAAFFAQtghettggwpdapggeyawgycfisevsppsdycdpnypcrgkyygrgpiqlswnynylrcgeglglgeellnnpdllatdpvlSFKSAIWFWMtaqppkpscheviidewkpsandvnagrlpgyglttniinggiecgqggnaAVRNRIGFFTTfcgkfgiqpgdsldcynqrpygLNLMAQSM
mfddlleyrndercparGFYTYDAFIEAAQAFPGFGNSGNETMRKREIAAFFAQTGHETTGGWPDAPGGEYAWGYCFISEVSPPSDYCDPNYPCRGKYYGRGPIQLSWNYNYLRCGEGLGLGEELLNNPDLLATDPVLSFKSAIWFWMTAQPPKPSCHEVIIDEWKPSANDVNAGRLPGYGLTTNIINGGIECGQGGNAAVRNRIGFFTTFCGKFGIQPGDSLDCYNQRPYGLNLMAQSM
MFDDLLEYRNDERCPARGFYTYDAFIEAAQAFPGFGNSGNETMRKREIAAFFAQTGHETTGGWPDAPGGEYAWGYCFISEVSPPSDYCDPNYPCRGKYYGRGPIQLSWNYNYLRCgeglglgeellNNPDLLATDPVLSFKSAIWFWMTAQPPKPSCHEVIIDEWKPSANDVNAGRLPGYGLTTNIINGGIECGQGGNAAVRNRIGFFTTFCGKFGIQPGDSLDCYNQRPYGLNLMAQSM
*******YRNDERCPARGFYTYDAFIEAAQAFPGFGNSGNETMRKREIAAFFAQTGHETTGGWPDAPGGEYAWGYCFISEVSPPSDYCDPNYPCRGKYYGRGPIQLSWNYNYLRCGEGLGLGEELLNNPDLLATDPVLSFKSAIWFWMTAQPPKPSCHEVIIDEWKPSANDVNAGRLPGYGLTTNIINGGIECGQGGNAAVRNRIGFFTTFCGKFGIQPGDSLDCYNQRPYGLN******
MFDDLLEYRNDERCPARGFYTYDAFIEAAQAFPGFGNSGNETMRKREIAAFFAQTGHETTGGWPDAPGGEYAWGYCFISEVSPPSDYCDPNYPCRGKYYGRGPIQLSWNYNYLRCGEGLGLGEELLNNPDLLATDPVLSFKSAIWFWMTAQPPKPSCHEVIIDEWKPSANDVNAGRLPGYGLTTNIINGGIECGQGGNAAVRNRIGFFTTFCGKFGIQPGDSLDCYNQRPYGL*******
MFDDLLEYRNDERCPARGFYTYDAFIEAAQAFPGFGNSGNETMRKREIAAFFAQTGHETTGGWPDAPGGEYAWGYCFISEVSPPSDYCDPNYPCRGKYYGRGPIQLSWNYNYLRCGEGLGLGEELLNNPDLLATDPVLSFKSAIWFWMTAQPPKPSCHEVIIDEWKPSANDVNAGRLPGYGLTTNIINGGIECGQGGNAAVRNRIGFFTTFCGKFGIQPGDSLDCYNQRPYGLNLMAQSM
MFDDLLEYRNDERCPARGFYTYDAFIEAAQAFPGFGNSGNETMRKREIAAFFAQTGHETTGGWPDAPGGEYAWGYCFISEVSPPSDYCDPNYPCRGKYYGRGPIQLSWNYNYLRCGEGLGLGEELLNNPDLLATDPVLSFKSAIWFWMTAQPPKPSCHEVIIDEWKPSANDVNAGRLPGYGLTTNIINGGIECGQGGNAAVRNRIGFFTTFCGKFGIQPGDSLDCYNQRPYGL*******
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
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MFDDLLEYRNDERCPARGFYTYDAFIEAAQAFPGFGNSGNETMRKREIAAFFAQTGHETTGGWPDAPGGEYAWGYCFISEVSPPSDYCDPNYPCRGKYYGRGPIQLSWNYNYLRCGEGLGLGEELLNNPDLLATDPVLSFKSAIWFWMTAQPPKPSCHEVIIDEWKPSANDVNAGRLPGYGLTTNIINGGIECGQGGNAAVRNRIGFFTTFCGKFGIQPGDSLDCYNQRPYGLNLMAQSM
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query240 2.2.26 [Sep-21-2011]
P19171335 Basic endochitinase B OS= yes no 0.991 0.710 0.610 6e-87
P08252329 Endochitinase A OS=Nicoti N/A no 0.991 0.723 0.614 1e-85
P85084243 Endochitinase OS=Carica p N/A no 0.958 0.946 0.631 2e-85
Q09023322 Endochitinase CH25 OS=Bra N/A no 0.954 0.711 0.621 2e-85
P24091324 Endochitinase B OS=Nicoti N/A no 0.991 0.734 0.610 2e-85
Q39799324 Endochitinase 1 OS=Gossyp N/A no 0.983 0.728 0.616 2e-84
P06215328 Endochitinase OS=Phaseolu N/A no 0.983 0.719 0.604 1e-83
P52403318 Endochitinase 1 (Fragment N/A no 0.991 0.748 0.608 1e-83
P36361327 Endochitinase CH5B OS=Pha N/A no 0.983 0.721 0.604 3e-83
Q39785302 Endochitinase 2 (Fragment N/A no 0.987 0.784 0.609 4e-83
>sp|P19171|CHIB_ARATH Basic endochitinase B OS=Arabidopsis thaliana GN=CHI-B PE=1 SV=3 Back     alignment and function desciption
 Score =  320 bits (820), Expect = 6e-87,   Method: Compositional matrix adjust.
 Identities = 149/244 (61%), Positives = 188/244 (77%), Gaps = 6/244 (2%)

Query: 1   MFDDLLEYRNDERCPARGFYTYDAFIEAAQAFPGFGNSGNETMRKREIAAFFAQTGHETT 60
            FDD+L++RND  CPARGFYTY+AFI AA++FPGFG +G+   RK+E+AAFF QT HETT
Sbjct: 94  QFDDMLKHRNDAACPARGFYTYNAFITAAKSFPGFGTTGDTATRKKEVAAFFGQTSHETT 153

Query: 61  GGWPDAPGGEYAWGYCFISEVSPPSDYCDPN--YPCRG--KYYGRGPIQLSWNYNYLRCG 116
           GGW  AP G Y+WGYCF  E +P SDYC+P+  +PC    +YYGRGP+QLSWNYNY  CG
Sbjct: 154 GGWATAPDGPYSWGYCFKQEQNPASDYCEPSATWPCASGKRYYGRGPMQLSWNYNYGLCG 213

Query: 117 EGLGLGEELLNNPDLLATDPVLSFKSAIWFWMTAQPPKPSCHEVIIDEWKPSANDVNAGR 176
             +G+  +LLNNPDL+A D V++FK+AIWFWMTAQPPKPSCH VI  +W+PS  D  AGR
Sbjct: 214 RAIGV--DLLNNPDLVANDAVIAFKAAIWFWMTAQPPKPSCHAVIAGQWQPSDADRAAGR 271

Query: 177 LPGYGLTTNIINGGIECGQGGNAAVRNRIGFFTTFCGKFGIQPGDSLDCYNQRPYGLNLM 236
           LPGYG+ TNIINGG+ECG+G +  V +RIGF+  +C  FG+ PG +LDCYNQR +   L+
Sbjct: 272 LPGYGVITNIINGGLECGRGQDGRVADRIGFYQRYCNIFGVNPGGNLDCYNQRSFVNGLL 331

Query: 237 AQSM 240
             ++
Sbjct: 332 EAAI 335




Defense against chitin containing fungal pathogens. Seems particularly implicated in resistance to jasmonate-inducing pathogens such as A.brassicicola. In vitro antifungal activity against T.reesei, but not against A.solani, F.oxysporum, S.sclerotiorum, G.graminis and P.megasperma.
Arabidopsis thaliana (taxid: 3702)
EC: 3EC: .EC: 2EC: .EC: 1EC: .EC: 1EC: 4
>sp|P08252|CHI1_TOBAC Endochitinase A OS=Nicotiana tabacum GN=CHN48 PE=1 SV=2 Back     alignment and function description
>sp|P85084|CHIT_CARPA Endochitinase OS=Carica papaya PE=1 SV=1 Back     alignment and function description
>sp|Q09023|CHI2_BRANA Endochitinase CH25 OS=Brassica napus PE=2 SV=1 Back     alignment and function description
>sp|P24091|CHI2_TOBAC Endochitinase B OS=Nicotiana tabacum GN=CHN50 PE=1 SV=1 Back     alignment and function description
>sp|Q39799|CHI1_GOSHI Endochitinase 1 OS=Gossypium hirsutum PE=3 SV=1 Back     alignment and function description
>sp|P06215|CHIT_PHAVU Endochitinase OS=Phaseolus vulgaris PE=1 SV=1 Back     alignment and function description
>sp|P52403|CHI1_SOLTU Endochitinase 1 (Fragment) OS=Solanum tuberosum GN=CHTB1 PE=2 SV=1 Back     alignment and function description
>sp|P36361|CHI5_PHAVU Endochitinase CH5B OS=Phaseolus vulgaris PE=3 SV=1 Back     alignment and function description
>sp|Q39785|CHI2_GOSHI Endochitinase 2 (Fragment) OS=Gossypium hirsutum PE=2 SV=2 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query240
1220144292 chitinase [Citrus sinensis] 1.0 0.821 1.0 1e-140
23496447293 acidic class II chitinase [Citrus jambhi 0.991 0.812 0.876 1e-118
23496445310 acidic class I chitinase [Citrus jambhir 0.879 0.680 0.902 1e-109
7798632299 class I chitinase [Boechera holboellii] 0.987 0.792 0.637 7e-89
30844172312 chitinase [Euonymus europaeus] 0.987 0.759 0.623 7e-89
30844174312 chitinase [Euonymus europaeus] 0.987 0.759 0.619 6e-88
7798664300 class I chitinase [Boechera lignifera] 0.987 0.79 0.625 8e-87
7798644300 class I chitinase [Boechera fecunda] 0.991 0.793 0.627 2e-86
5689134335 basic endochitinase [Arabidopsis halleri 0.991 0.710 0.610 2e-86
7798658302 class I chitinase [Boechera lemmonii] 0.991 0.788 0.622 2e-86
>gi|1220144|emb|CAA93847.1| chitinase [Citrus sinensis] Back     alignment and taxonomy information
 Score =  501 bits (1291), Expect = e-140,   Method: Compositional matrix adjust.
 Identities = 240/240 (100%), Positives = 240/240 (100%)

Query: 1   MFDDLLEYRNDERCPARGFYTYDAFIEAAQAFPGFGNSGNETMRKREIAAFFAQTGHETT 60
           MFDDLLEYRNDERCPARGFYTYDAFIEAAQAFPGFGNSGNETMRKREIAAFFAQTGHETT
Sbjct: 53  MFDDLLEYRNDERCPARGFYTYDAFIEAAQAFPGFGNSGNETMRKREIAAFFAQTGHETT 112

Query: 61  GGWPDAPGGEYAWGYCFISEVSPPSDYCDPNYPCRGKYYGRGPIQLSWNYNYLRCGEGLG 120
           GGWPDAPGGEYAWGYCFISEVSPPSDYCDPNYPCRGKYYGRGPIQLSWNYNYLRCGEGLG
Sbjct: 113 GGWPDAPGGEYAWGYCFISEVSPPSDYCDPNYPCRGKYYGRGPIQLSWNYNYLRCGEGLG 172

Query: 121 LGEELLNNPDLLATDPVLSFKSAIWFWMTAQPPKPSCHEVIIDEWKPSANDVNAGRLPGY 180
           LGEELLNNPDLLATDPVLSFKSAIWFWMTAQPPKPSCHEVIIDEWKPSANDVNAGRLPGY
Sbjct: 173 LGEELLNNPDLLATDPVLSFKSAIWFWMTAQPPKPSCHEVIIDEWKPSANDVNAGRLPGY 232

Query: 181 GLTTNIINGGIECGQGGNAAVRNRIGFFTTFCGKFGIQPGDSLDCYNQRPYGLNLMAQSM 240
           GLTTNIINGGIECGQGGNAAVRNRIGFFTTFCGKFGIQPGDSLDCYNQRPYGLNLMAQSM
Sbjct: 233 GLTTNIINGGIECGQGGNAAVRNRIGFFTTFCGKFGIQPGDSLDCYNQRPYGLNLMAQSM 292




Source: Citrus sinensis

Species: Citrus sinensis

Genus: Citrus

Family: Rutaceae

Order: Sapindales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|23496447|dbj|BAC20285.1| acidic class II chitinase [Citrus jambhiri] Back     alignment and taxonomy information
>gi|23496445|dbj|BAC20284.1| acidic class I chitinase [Citrus jambhiri] Back     alignment and taxonomy information
>gi|7798632|gb|AAF69770.1|AF135130_1 class I chitinase [Boechera holboellii] Back     alignment and taxonomy information
>gi|30844172|gb|AAP35271.1| chitinase [Euonymus europaeus] Back     alignment and taxonomy information
>gi|30844174|gb|AAP35272.1| chitinase [Euonymus europaeus] Back     alignment and taxonomy information
>gi|7798664|gb|AAF69786.1|AF135146_1 class I chitinase [Boechera lignifera] Back     alignment and taxonomy information
>gi|7798644|gb|AAF69776.1|AF135136_1 class I chitinase [Boechera fecunda] Back     alignment and taxonomy information
>gi|5689134|dbj|BAA82826.1| basic endochitinase [Arabidopsis halleri subsp. gemmifera] Back     alignment and taxonomy information
>gi|7798658|gb|AAF69783.1|AF135143_1 class I chitinase [Boechera lemmonii] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query240
UNIPROTKB|Q7DNA1340 Cht2 "Chitinase 2" [Oryza sati 0.954 0.673 0.595 5.5e-77
UNIPROTKB|Q9FRV0266 rscc "Basic endochitinase C" [ 0.95 0.857 0.585 5.1e-74
UNIPROTKB|P24626320 Cht3 "Chitinase 3" [Oryza sati 0.954 0.715 0.563 6.5e-74
UNIPROTKB|Q9FRV1321 rsca "Basic endochitinase A" [ 0.954 0.713 0.578 1.7e-73
UNIPROTKB|Q42993323 Cht1 "Chitinase 1" [Oryza sati 0.954 0.708 0.552 5.9e-73
UNIPROTKB|P25765326 Cht12 "Chitinase 12" [Oryza sa 0.958 0.705 0.539 8e-69
TAIR|locus:2133412280 AT4G01700 [Arabidopsis thalian 0.954 0.817 0.516 1.1e-66
TAIR|locus:2204918272 AT1G02360 [Arabidopsis thalian 0.954 0.841 0.495 8.5e-65
UNIPROTKB|A7XQ02415 A7XQ02 "Mulatexin" [Morus alba 0.875 0.506 0.432 1.7e-41
TAIR|locus:2198688321 POM1 "POM-POM1" [Arabidopsis t 0.983 0.735 0.357 1.4e-39
UNIPROTKB|Q7DNA1 Cht2 "Chitinase 2" [Oryza sativa Japonica Group (taxid:39947)] Back     alignment and assigned GO terms
 Score = 775 (277.9 bits), Expect = 5.5e-77, P = 5.5e-77
 Identities = 140/235 (59%), Positives = 168/235 (71%)

Query:     1 MFDDLLEYRNDERCPARGFYTYDAFIEAAQAFPGFGNSGNETMRKREIAAFFAQTGHETT 60
             +F+ LL +RND  CPARGFYTY+AF+ AA AFP FG +GN   RKRE+AAF  QT HETT
Sbjct:    97 LFERLLLHRNDGACPARGFYTYEAFLAAAAAFPAFGGTGNTETRKREVAAFLGQTSHETT 156

Query:    61 GGWPDAPGGEYAWGYCFISEVSPPSDYCDPN--YPCR-G-KYYGRGPIQLSWNYNYLRCX 116
             GGWP AP G ++WGYCF  E +PPSDYC P+  +PC  G KYYGRGPIQLS+N+NY    
Sbjct:   157 GGWPTAPDGPFSWGYCFKQEQNPPSDYCQPSPEWPCAPGRKYYGRGPIQLSFNFNY--GP 214

Query:   117 XXXXXXXXXXNNPDLLATDPVLSFKSAIWFWMTAQPPKPSCHEVIIDEWKPSANDVNAGR 176
                       +NPDL+ATD  +SFK+A+WFWMT Q  KPS H+VI   W PS  D  AGR
Sbjct:   215 AGRAIGVDLLSNPDLVATDATVSFKTALWFWMTPQGNKPSSHDVITGRWAPSPADAAAGR 274

Query:   177 LPGYGLTTNIINGGIECGQGGNAAVRNRIGFFTTFCGKFGIQPGDSLDCYNQRPY 231
              PGYG+ TNI+NGG+ECG G +  V NRIGF+  +CG FGI  G +LDCYNQRP+
Sbjct:   275 APGYGVITNIVNGGLECGHGPDDRVANRIGFYQRYCGAFGIGTGGNLDCYNQRPF 329




GO:0004568 "chitinase activity" evidence=IDA
GO:0050832 "defense response to fungus" evidence=IDA
UNIPROTKB|Q9FRV0 rscc "Basic endochitinase C" [Secale cereale (taxid:4550)] Back     alignment and assigned GO terms
UNIPROTKB|P24626 Cht3 "Chitinase 3" [Oryza sativa Japonica Group (taxid:39947)] Back     alignment and assigned GO terms
UNIPROTKB|Q9FRV1 rsca "Basic endochitinase A" [Secale cereale (taxid:4550)] Back     alignment and assigned GO terms
UNIPROTKB|Q42993 Cht1 "Chitinase 1" [Oryza sativa Japonica Group (taxid:39947)] Back     alignment and assigned GO terms
UNIPROTKB|P25765 Cht12 "Chitinase 12" [Oryza sativa Japonica Group (taxid:39947)] Back     alignment and assigned GO terms
TAIR|locus:2133412 AT4G01700 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2204918 AT1G02360 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
UNIPROTKB|A7XQ02 A7XQ02 "Mulatexin" [Morus alba (taxid:3498)] Back     alignment and assigned GO terms
TAIR|locus:2198688 POM1 "POM-POM1" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

ID ?Name ?Annotated EC number ?Identity ?Query coverage ?Hit coverage ?RBH(Q2H) ?RBH(H2Q) ?
P24626CHI3_ORYSJ3, ., 2, ., 1, ., 1, 40.58050.95410.7156yesno
P29021CHIT_PETHY3, ., 2, ., 1, ., 1, 40.55840.90830.8582N/Ano
Q05537CHID_SOLLC3, ., 2, ., 1, ., 1, 40.55930.95830.9349N/Ano
P23951CHI2_HORVU3, ., 2, ., 1, ., 1, 40.59140.95410.8609N/Ano
P17513CHIP_TOBAC3, ., 2, ., 1, ., 1, 40.56270.90.8537N/Ano
P17514CHIQ_TOBAC3, ., 2, ., 1, ., 1, 40.56460.90410.8577N/Ano
Q05539CHIA_SOLLC3, ., 2, ., 1, ., 1, 40.54110.90.8537N/Ano
Q9FRV0CHIC_SECCE3, ., 2, ., 1, ., 1, 40.59140.95410.8609N/Ano
P19171CHIB_ARATH3, ., 2, ., 1, ., 1, 40.61060.99160.7104yesno
Q05540CHIB_SOLLC3, ., 2, ., 1, ., 1, 40.56270.90830.8825N/Ano
P85084CHIT_CARPA3, ., 2, ., 1, ., 1, 40.63130.95830.9465N/Ano
Q40114CHIA_SOLCI3, ., 2, ., 1, ., 1, 40.54970.90.8537N/Ano

EC Number Prediction by Ezypred Server ?

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

Prediction LevelEC numberConfidence of Prediction
3rd Layer3.2.1.140.946
3rd Layer3.2.10.963

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Your Input:
fgenesh1_pm.C_scaffold_3001035
annotation not avaliable (334 aa)
(Arabidopsis lyrata)
Predicted Functional Partners:
 
Sorry, there are no predicted associations at the current settings.
 

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query240
cd00325230 cd00325, chitinase_glyco_hydro_19, Glycoside hydro 1e-131
pfam00182232 pfam00182, Glyco_hydro_19, Chitinase class I 1e-126
cd00442105 cd00442, lysozyme_like, lysozyme_like domain 2e-09
COG3179206 COG3179, COG3179, Predicted chitinase [General fun 1e-08
>gnl|CDD|238199 cd00325, chitinase_glyco_hydro_19, Glycoside hydrolase family 19 chitinase domain Back     alignment and domain information
 Score =  367 bits (945), Expect = e-131
 Identities = 146/228 (64%), Positives = 170/228 (74%), Gaps = 5/228 (2%)

Query: 1   MFDDLLEYRNDERCPARGFYTYDAFIEAAQAFPGFGNSGNETMRKREIAAFFAQTGHETT 60
           +F+ +  +RND  CPA+GFYTYDAFI AA +FPGFG +G++  RKREIAAFFA T HET 
Sbjct: 5   LFEGIFSHRNDSGCPAKGFYTYDAFITAANSFPGFGTTGDDDTRKREIAAFFAHTSHETG 64

Query: 61  GGWPDAPGGEYAWGYCFISEVSPPSDYCDP-NYPCR--GKYYGRGPIQLSWNYNYLRCGE 117
           GG   AP G YAWGYC  SE  PPS YCDP  +PC    KYYGRGPIQLSWNYNY   G+
Sbjct: 65  GGCYIAPDGPYAWGYCDKSETGPPSSYCDPAQWPCAPGKKYYGRGPIQLSWNYNYGPAGK 124

Query: 118 GLGLGEELLNNPDLLATDPVLSFKSAIWFWMTAQPPKPSCHEVIIDEWKPSANDVNAGRL 177
            LG   +LLNNPDL+ATDPV+SFK+AIWFWMT Q PKPSCH+VI   W PSA D  AGR 
Sbjct: 125 ALGF--DLLNNPDLVATDPVVSFKTAIWFWMTPQGPKPSCHDVITGTWTPSAADTAAGRG 182

Query: 178 PGYGLTTNIINGGIECGQGGNAAVRNRIGFFTTFCGKFGIQPGDSLDC 225
           PG+G TTNIINGG+ECG G    V+NRIG++  +C   G+ PGD+LDC
Sbjct: 183 PGFGATTNIINGGLECGGGNPDQVQNRIGYYKRYCDMLGVSPGDNLDC 230


Chitinases are enzymes that catalyze the hydrolysis of the beta-1,4-N-acetyl-D-glucosamine linkages in chitin polymers. Family 19 chitinases are found primarily in plants (classes I, III, and IV), but some are found in bacteria. Class I and II chitinases are similar in their catalytic domains. Class I chitinases have an N-terminal cysteine-rich, chitin-binding domain which is separated from the catalytic domain by a proline and glycine-rich hinge region. Class II chitinases lack both the chitin-binding domain and the hinge region. Class IV chitinases are similar to class I chitinases but they are smaller in size due to certain deletions. Despite any significant sequence homology with lysozymes, structural analysis reveals that family 19 chitinases, together with family 46 chitosanases, are similar to several lysozymes including those from T4-phage and from goose. The structures reveal that the different enzyme groups arose from a common ancestor glycohydrolase antecedent to the procaryotic/eucaryotic divergence. Length = 230

>gnl|CDD|201064 pfam00182, Glyco_hydro_19, Chitinase class I Back     alignment and domain information
>gnl|CDD|238249 cd00442, lysozyme_like, lysozyme_like domain Back     alignment and domain information
>gnl|CDD|225720 COG3179, COG3179, Predicted chitinase [General function prediction only] Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 240
cd00325230 chitinase_glyco_hydro_19 Glycoside hydrolase famil 100.0
PF00182232 Glyco_hydro_19: Chitinase class I; InterPro: IPR00 100.0
KOG4742286 consensus Predicted chitinase [General function pr 100.0
COG3179206 Predicted chitinase [General function prediction o 100.0
cd00442105 lysozyme_like lysozyme_like domain. This contains 99.3
>cd00325 chitinase_glyco_hydro_19 Glycoside hydrolase family 19 chitinase domain Back     alignment and domain information
Probab=100.00  E-value=8.5e-73  Score=493.77  Aligned_cols=223  Identities=65%  Similarity=1.281  Sum_probs=215.6

Q ss_pred             ChhhhhcccCCCCCCCCCCCCHHHHHHHHHhCccCCCCCCcchhhHHHHHhhhhcccccCCCCCCCCCCCcccccccccc
Q 026315            1 MFDDLLEYRNDERCPARGFYTYDAFIEAAQAFPGFGNSGNETMRKREIAAFFAQTGHETTGGWPDAPGGEYAWGYCFISE   80 (240)
Q Consensus         1 ~f~~~f~~~~~~~~~~~~~~ty~~fi~A~~~~~~F~~~g~~~t~~re~A~FLAq~~hETg~~~~~~~~~~~~~g~~~~~E   80 (240)
                      +||+|||+||+..||+++||||++||+|+++||.|+++|+.+++|||+||||||++|||++++...|.++|+||+|+.+|
T Consensus         5 ~f~~~~~~~~~~~c~~~~fYTy~~fi~Aa~~fp~f~~~g~~~~~krElAaFlAq~~hETgg~~~~~e~~~~~~g~c~~~e   84 (230)
T cd00325           5 LFEGIFSHRNDSGCPAKGFYTYDAFITAANSFPGFGTTGDDDTRKREIAAFFAHTSHETGGGCYIAPDGPYAWGYCDKSE   84 (230)
T ss_pred             HHHHHhhcCCCCCCCCCCCCcHHHHHHHHHhccccccCCCchhhHHHHHHHHhhhcccCCCCccccccccccCCcccccc
Confidence            69999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             cCCCCCCCC-CCCCCC--CCcccCCCccccchHHHHHHHhhcCCCCcccCCccccccCchhhhhhhHHHhHhCCCCCCCc
Q 026315           81 VSPPSDYCD-PNYPCR--GKYYGRGPIQLSWNYNYLRCGEGLGLGEELLNNPDLLATDPVLSFKSAIWFWMTAQPPKPSC  157 (240)
Q Consensus        81 ~~~~~~y~~-~~~p~~--~~Y~GRG~IQLTg~~NY~~~~~~lg~~~dl~~nPdlva~d~~~A~~sA~wfW~~~~~~~~s~  157 (240)
                      ..+...||. .++||.  ++|||||+||||||+||+++++++++  |||+|||+|++||.+|+++|+||||+.+.++|++
T Consensus        85 ~~~~~~~~~~~~~pc~dG~~Y~GRG~iQLT~~~NY~~~g~~lg~--dll~~Pdlva~dp~~a~~sA~WfW~t~~~~k~s~  162 (230)
T cd00325          85 TGPPSSYCDPAQWPCAPGKKYYGRGPIQLSWNYNYGPAGKALGF--DLLNNPDLVATDPVVSFKTAIWFWMTPQGPKPSC  162 (230)
T ss_pred             CCCcccccccCCCCCCcccccccCCceeeeehhhHHHHHHHhCC--ccccCHHHHhcCchhhhhhhhhheeeCCCCCCCc
Confidence            987777877 678886  99999999999999999999999998  9999999999999999999999999999999999


Q ss_pred             chhhcccCCCCccccccCCCCcccccceeeeCccccCCCCchHHHHHHHHHHHHHHHhCCCCCCCCcC
Q 026315          158 HEVIIDEWKPSANDVNAGRLPGYGLTTNIINGGIECGQGGNAAVRNRIGFFTTFCGKFGIQPGDSLDC  225 (240)
Q Consensus       158 ~~~~~~~w~~~~~d~~a~~~~~f~~vt~iINGg~ec~~~~~~g~~~R~~~y~~~~~~lgv~~g~~l~c  225 (240)
                      |+||+|+|+|++.|..+++.++|+.||+|||||+||+++..+++.+|+++|++++++|||+||++|+|
T Consensus       163 h~vi~g~w~p~~~d~a~~~~~gfg~tt~iINGg~EC~~~~~~~~~~Ri~~Y~~~~~~lgv~~g~nL~C  230 (230)
T cd00325         163 HDVITGTWTPSAADTAAGRGPGFGATTNIINGGLECGGGNPDQVQNRIGYYKRYCDMLGVSPGDNLDC  230 (230)
T ss_pred             ceeeccCcCCchhhhhccccCChhhhheeecCCcccCCCCchHHHHHHHHHHHHHHHhCCCCCCCCCC
Confidence            99999999999999888888899999999999999999999999999999999999999999999999



Chitinases are enzymes that catalyze the hydrolysis of the beta-1,4-N-acetyl-D-glucosamine linkages in chitin polymers. Family 19 chitinases are found primarily in plants (classes I, III, and IV), but some are found in bacteria. Class I and II chitinases are similar in their catalytic domains. Class I chitinases have an N-terminal cysteine-rich, chitin-binding domain which is separated from the catalytic domain by a proline and glycine-rich hinge region. Class II chitinases lack both the chitin-binding domain and the hinge region. Class IV chitinases are similar to class I chitinases but they are smaller in size due to certain deletions. Despite any significant sequence homology with lysozymes, structural analysis reveals that family 19 chitinases, together with family 46 chitosanases, are similar to several lysozymes including those from T4-phage and from goose. The structures reveal that the different en

>PF00182 Glyco_hydro_19: Chitinase class I; InterPro: IPR000726 O-Glycosyl hydrolases 3 Back     alignment and domain information
>KOG4742 consensus Predicted chitinase [General function prediction only] Back     alignment and domain information
>COG3179 Predicted chitinase [General function prediction only] Back     alignment and domain information
>cd00442 lysozyme_like lysozyme_like domain Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query240
3cql_A243 Crystal Structure Of Gh Family 19 Chitinase From Ca 2e-84
4dwx_A244 Crystal Structure Of A Family Gh-19 Chitinase From 1e-75
2z37_A244 Crystal Structure Of Brassica Juncea Chitinase Cata 2e-75
2z38_A247 Crystal Structure Of Chloride Bound Brassica Juncea 3e-75
2z39_A246 Crystal Structure Of Brassica Juncea Chitinase Cata 1e-74
1dxj_A242 Structure Of The Chitinase From Jack Bean Length = 8e-72
3w3e_A242 Structure Of Vigna Unguiculata Chitinase With Regul 2e-71
1cns_A243 Crystal Structure Of Chitinase At 1.91a Resolution 6e-71
2baa_A243 The Refined Crystal Structure Of An Endochitinase F 1e-70
2dkv_A309 Crystal Structure Of Class I Chitinase From Oryza S 3e-70
3hbd_A204 Class Iv Chitinase Structure From Picea Abies At 1. 3e-35
2cjl_A204 Crystal Structure And Enzymatic Properties Of A Bac 5e-29
1wvu_A265 Crystal Structure Of Chitinase C From Streptomyces 5e-26
1wvv_A265 Crystal Structure Of Chitinase C Mutant E147q Lengt 1e-25
>pdb|3CQL|A Chain A, Crystal Structure Of Gh Family 19 Chitinase From Carica Papaya Length = 243 Back     alignment and structure

Iteration: 1

Score = 308 bits (788), Expect = 2e-84, Method: Compositional matrix adjust. Identities = 150/236 (63%), Positives = 178/236 (75%), Gaps = 6/236 (2%) Query: 1 MFDDLLEYRNDERCPARGFYTYDAFIEAAQAFPGFGNSGNETMRKREIAAFFAQTGHETT 60 MFD +L++RN+ CPA+GFYTYDAFI AA++FP FG +G+ +RKREIAAF QT HETT Sbjct: 10 MFDQMLKHRNNPACPAKGFYTYDAFIAAAKSFPSFGTTGSTDVRKREIAAFLGQTSHETT 69 Query: 61 GGWPDAPGGEYAWGYCFISEVSPPSDYC--DPNYPCR-GK-YYGRGPIQLSWNYNYLRCX 116 GGWP AP G YAWGYCF+ E +P S+YC P YPC GK YYGRGPIQLSWNYNY C Sbjct: 70 GGWPSAPDGPYAWGYCFLKERNPSSNYCAPSPRYPCAPGKSYYGRGPIQLSWNYNYGPCG 129 Query: 117 XXXXXXXXXXNNPDLLATDPVLSFKSAIWFWMTAQPPKPSCHEVIIDEWKPSANDVNAGR 176 NPDL+ATD V+SFK+A+WFWMT Q PKPSCH+VI W+PSA D AGR Sbjct: 130 EALRVNLL--GNPDLVATDRVISFKTALWFWMTPQAPKPSCHDVITGRWQPSAADTAAGR 187 Query: 177 LPGYGLTTNIINGGIECGQGGNAAVRNRIGFFTTFCGKFGIQPGDSLDCYNQRPYG 232 LPGYG+ TNIINGG+ECG+G N V +RIGFF +CG G+ G++LDCYNQRP+G Sbjct: 188 LPGYGVITNIINGGLECGKGPNPQVADRIGFFRRYCGILGVGTGNNLDCYNQRPFG 243
>pdb|4DWX|A Chain A, Crystal Structure Of A Family Gh-19 Chitinase From Rye Seeds Length = 244 Back     alignment and structure
>pdb|2Z37|A Chain A, Crystal Structure Of Brassica Juncea Chitinase Catalytic Module (Bjchi3) Length = 244 Back     alignment and structure
>pdb|2Z38|A Chain A, Crystal Structure Of Chloride Bound Brassica Juncea Chitinase Catalytic Module (Bjchi3) Length = 247 Back     alignment and structure
>pdb|2Z39|A Chain A, Crystal Structure Of Brassica Juncea Chitinase Catalytic Module Glu234ala Mutant (bjchi3-e234a) Length = 246 Back     alignment and structure
>pdb|1DXJ|A Chain A, Structure Of The Chitinase From Jack Bean Length = 242 Back     alignment and structure
>pdb|3W3E|A Chain A, Structure Of Vigna Unguiculata Chitinase With Regulation Activity Of The Plant Cell Wall Length = 242 Back     alignment and structure
>pdb|1CNS|A Chain A, Crystal Structure Of Chitinase At 1.91a Resolution Length = 243 Back     alignment and structure
>pdb|2BAA|A Chain A, The Refined Crystal Structure Of An Endochitinase From Hordeum Vulgare L. Seeds To 1.8 Angstroms Resolution Length = 243 Back     alignment and structure
>pdb|2DKV|A Chain A, Crystal Structure Of Class I Chitinase From Oryza Sativa L. Japonica Length = 309 Back     alignment and structure
>pdb|3HBD|A Chain A, Class Iv Chitinase Structure From Picea Abies At 1.8a Length = 204 Back     alignment and structure
>pdb|2CJL|A Chain A, Crystal Structure And Enzymatic Properties Of A Bacterial Family 19 Chitinase Reveal Differences With Plant Enzymes Length = 204 Back     alignment and structure
>pdb|1WVU|A Chain A, Crystal Structure Of Chitinase C From Streptomyces Griseus Hut6037 Length = 265 Back     alignment and structure
>pdb|1WVV|A Chain A, Crystal Structure Of Chitinase C Mutant E147q Length = 265 Back     alignment and structure

Structure Templates Detected by RPS-BLAST ?

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query240
2z37_A244 Chitinase; family 19, conformational changes, hydr 1e-90
3cql_A243 Endochitinase; glycosyl hydrolase, N-acetyl-D-gluc 7e-88
1dxj_A242 Class II chitinase; hydrolase, family 19 glycosida 5e-86
2dkv_A309 Chitinase; whole structure, oryza sativa L. japoni 1e-71
2cjl_A204 Chitinase G, secreted chitinase; hydrolase, plant 1e-57
3hbe_X204 Class IV chitinase CHIA4-PA2; endochitinase, famil 3e-52
1wvv_A265 Chitinase C; family 19 chitinase, whole structure, 7e-52
>2z37_A Chitinase; family 19, conformational changes, hydrolase; 1.53A {Brassica juncea} PDB: 2z38_A 2z39_A Length = 244 Back     alignment and structure
 Score =  266 bits (680), Expect = 1e-90
 Identities = 137/236 (58%), Positives = 172/236 (72%), Gaps = 7/236 (2%)

Query: 1   MFDDLLEYRNDERCPARGFYTYDAFIEAAQAFPGFGNSGNETMRKREIAAFFAQTGHETT 60
            F  +L++ ND  C A GF+TYDAFI AA++FP FGN+G+  MRK+EIAAFF QT HETT
Sbjct: 10  QFYKMLKHMNDNDCHAVGFFTYDAFITAAKSFPSFGNTGDLAMRKKEIAAFFGQTSHETT 69

Query: 61  GGWPDAPGGEYAWGYCFISEVSPPSDYCDPN---YPC--RGKYYGRGPIQLSWNYNYLRC 115
           GGW  AP G   WGYC+  E+     +CD N   +PC     YYGRGP+ LSWNYNY  C
Sbjct: 70  GGWSGAPDGANTWGYCYKEEIDKSDPHCDSNNLEWPCAPGKFYYGRGPMMLSWNYNYGPC 129

Query: 116 GEGLGLGEELLNNPDLLATDPVLSFKSAIWFWMTAQPPKPSCHEVIIDEWKPSANDVNAG 175
           G  LGL    L NPD+ ++DPV++FK+AIWFWMT Q PKPSCH+VI D+W+PSA D++AG
Sbjct: 130 GRDLGLEL--LKNPDVASSDPVIAFKTAIWFWMTPQAPKPSCHDVITDQWEPSAADISAG 187

Query: 176 RLPGYGLTTNIINGGIECGQGGNAAVRNRIGFFTTFCGKFGIQPGDSLDCYNQRPY 231
           RLPGYG+ TNIINGG+EC     A V++RI F+T +CG FG+ PG ++DC NQRP+
Sbjct: 188 RLPGYGVITNIINGGLECAGRDVAKVQDRISFYTRYCGMFGVDPGSNIDCDNQRPF 243


>3cql_A Endochitinase; glycosyl hydrolase, N-acetyl-D-glucosamine, carbo metabolism, chitin degradation, chitin-binding, glycosidase hydrolase; HET: NDG NAG; 1.50A {Carica papaya} PDB: 1cns_A 2baa_A Length = 243 Back     alignment and structure
>1dxj_A Class II chitinase; hydrolase, family 19 glycosidase, alpha helical protein; 1.8A {Canavalia ensiformis} SCOP: d.2.1.1 Length = 242 Back     alignment and structure
>2dkv_A Chitinase; whole structure, oryza sativa L. japonica, hydrolase; HET: MES; 2.00A {Oryza sativa japonica group} PDB: 3iwr_A* Length = 309 Back     alignment and structure
>2cjl_A Chitinase G, secreted chitinase; hydrolase, plant enzymes; 1.5A {Streptomyces coelicolor} Length = 204 Back     alignment and structure
>3hbe_X Class IV chitinase CHIA4-PA2; endochitinase, family 19, conformational changes, chitin-binding, glycosidase, hydrolase; 1.55A {Picea abies} PDB: 3hbd_A 3hbh_A Length = 204 Back     alignment and structure
>1wvv_A Chitinase C; family 19 chitinase, whole structure, hydrolase; 2.00A {Streptomyces griseus} PDB: 1wvu_A 2dbt_A* 2d49_A Length = 265 Back     alignment and structure

Structure Templates Detected by HHsearch ?

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query240
3w3e_A242 Cotyledoneous yieldin-like protein; alpha helical 100.0
3cql_A243 Endochitinase; glycosyl hydrolase, N-acetyl-D-gluc 100.0
1dxj_A242 Class II chitinase; hydrolase, family 19 glycosida 100.0
2z37_A244 Chitinase; family 19, conformational changes, hydr 100.0
2dkv_A309 Chitinase; whole structure, oryza sativa L. japoni 100.0
3hbe_X204 Class IV chitinase CHIA4-PA2; endochitinase, famil 100.0
2cjl_A204 Chitinase G, secreted chitinase; hydrolase, plant 100.0
1wvv_A265 Chitinase C; family 19 chitinase, whole structure, 100.0
>3w3e_A Cotyledoneous yieldin-like protein; alpha helical protein, hydrolase, family 19 glycosidase, REG protein of the cell WALL yield threshold; 1.50A {Vigna unguiculata} PDB: 1dxj_A Back     alignment and structure
Probab=100.00  E-value=1e-81  Score=549.97  Aligned_cols=230  Identities=57%  Similarity=1.161  Sum_probs=224.2

Q ss_pred             ChhhhhcccCCCCCCCCCCCCHHHHHHHHHhCccCCCCCCcchhhHHHHHhhhhcccccCCCCCCCCCCCcccccccccc
Q 026315            1 MFDDLLEYRNDERCPARGFYTYDAFIEAAQAFPGFGNSGNETMRKREIAAFFAQTGHETTGGWPDAPGGEYAWGYCFISE   80 (240)
Q Consensus         1 ~f~~~f~~~~~~~~~~~~~~ty~~fi~A~~~~~~F~~~g~~~t~~re~A~FLAq~~hETg~~~~~~~~~~~~~g~~~~~E   80 (240)
                      +||+|||+||++.||+++||||++||+|+++||+|+++|+.+++||||||||||++|||++++...++++|+|||||++|
T Consensus        11 ~f~~~~~~rn~~~c~~~~fYty~~fi~Aa~~fp~F~~tg~~~~~krElAaFlA~~~hET~gg~~~a~~g~~~wg~~~~~E   90 (242)
T 3w3e_A           11 LFDQLLKHRNDQACEGKGFYSYNAFITAARSFAAFGTTGDSNTRKREVAAFLAQTSHETTGGAATSPDGPYAWGYCFVTE   90 (242)
T ss_dssp             HHHHHTTTTTSTTSSCTTCSCHHHHHHHHHTSTTTTCSSSHHHHHHHHHHHHHHHHHHTCCCCTTSTTCGGGCTTCCSBC
T ss_pred             HHHHHhhccCCCCCCCCCcccHHHHHHHHHhhhhhcCCCCchhhHHHHHHHHhhcccccCCCcccCCCCccceEEEEeec
Confidence            59999999999999999999999999999999999999999999999999999999999888999999999999999999


Q ss_pred             cCCCCCCCCCCCCCC--CCcccCCCccccchHHHHHHHhhcCCCCcccCCccccccCchhhhhhhHHHhHhCCCCCCCcc
Q 026315           81 VSPPSDYCDPNYPCR--GKYYGRGPIQLSWNYNYLRCGEGLGLGEELLNNPDLLATDPVLSFKSAIWFWMTAQPPKPSCH  158 (240)
Q Consensus        81 ~~~~~~y~~~~~p~~--~~Y~GRG~IQLTg~~NY~~~~~~lg~~~dl~~nPdlva~d~~~A~~sA~wfW~~~~~~~~s~~  158 (240)
                      +.+...||+..|||.  ++|||||+||||||+||+++++++++  |||+|||+|++||.+|+++|+||||+.+.++||+|
T Consensus        91 ~~~~~~YC~~~~Pc~dG~~Y~GRG~IQLTg~~NY~~~g~~lg~--Dll~nPdlva~dp~~a~~sA~wfW~t~~~~kps~h  168 (242)
T 3w3e_A           91 RDKSNRYCDGSGPCSAGKSYYGRGPIQLTHNYNYNAAGRALGV--DLINNPDLVARDAVVSFKTALWFWMTPQGNKPSCH  168 (242)
T ss_dssp             SCCSCCCCCSSSCCCTTCCCCCBTTTTBCSHHHHHHHHHHHTS--CTTTCTTHHHHCHHHHHHHHHHHHHCCBTTBCCHH
T ss_pred             ccCcccccccCCCCCCCCceecCCcccCCcHHHHHHHHHHhCC--ccccCHHHHhhCHHHHHHHHHhhheeCCCCCCchh
Confidence            988789999779997  99999999999999999999999999  99999999999999999999999999999999999


Q ss_pred             hhhcccCCCCccccccCCCCcccccceeeeCccccCCCCchHHHHHHHHHHHHHHHhCCCCCCCCcCCCCcCCC
Q 026315          159 EVIIDEWKPSANDVNAGRLPGYGLTTNIINGGIECGQGGNAAVRNRIGFFTTFCGKFGIQPGDSLDCYNQRPYG  232 (240)
Q Consensus       159 ~~~~~~w~~~~~d~~a~~~~~f~~vt~iINGg~ec~~~~~~g~~~R~~~y~~~~~~lgv~~g~~l~c~~~~~~~  232 (240)
                      ++|+|+|+|+..|..+++.++|+.||+|||||+||+++..+++++|+++|++++++|||++|++|+|++||||.
T Consensus       169 ~vi~g~w~p~~aD~~agr~~gfg~tt~iINGGlECg~~~~~~~~dRi~~Y~r~~~~Lgv~~G~nl~C~~q~~f~  242 (242)
T 3w3e_A          169 DVITNRWTPSAADKAANRVPGFGVITNIINGGLECGKGPTPASGDRIGFYKRYCDVFGVSYGPNLNCRDQRPFG  242 (242)
T ss_dssp             HHHTTCCCCCHHHHHTTCCSSHHHHHHHHHHHHHSSSSCCHHHHHHHHHHHHHHHHHTCCCCSCCCCTTCCCCC
T ss_pred             hhhhccCCCccchhhhcccCChhhheeeecCccccCCCCchHHHHHHHHHHHHHHHhCCCCCCCcCcccCCCCC
Confidence            99999999999999999889999999999999999999999999999999999999999999999999999995



>3cql_A Endochitinase; glycosyl hydrolase, N-acetyl-D-glucosamine, carbo metabolism, chitin degradation, chitin-binding, glycosidase hydrolase; HET: NDG NAG; 1.50A {Carica papaya} PDB: 1cns_A 2baa_A Back     alignment and structure
>1dxj_A Class II chitinase; hydrolase, family 19 glycosidase, alpha helical protein; 1.8A {Canavalia ensiformis} SCOP: d.2.1.1 Back     alignment and structure
>2z37_A Chitinase; family 19, conformational changes, hydrolase; 1.53A {Brassica juncea} PDB: 2z38_A 2z39_A Back     alignment and structure
>2dkv_A Chitinase; whole structure, oryza sativa L. japonica, hydrolase; HET: MES; 2.00A {Oryza sativa japonica group} PDB: 3iwr_A* Back     alignment and structure
>3hbe_X Class IV chitinase CHIA4-PA2; endochitinase, family 19, conformational changes, chitin-binding, glycosidase, hydrolase; 1.55A {Picea abies} SCOP: d.2.1.0 PDB: 3hbd_A 3hbh_A Back     alignment and structure
>2cjl_A Chitinase G, secreted chitinase; hydrolase, plant enzymes; 1.5A {Streptomyces coelicolor} Back     alignment and structure
>1wvv_A Chitinase C; family 19 chitinase, whole structure, hydrolase; 2.00A {Streptomyces griseus} PDB: 1wvu_A 2dbt_A* 2d49_A Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 240
d1dxja_242 d.2.1.1 (A:) Plant class II chitinase {Jack bean ( 1e-107
d2baaa_243 d.2.1.1 (A:) Plant class II chitinase {Barley (Hor 1e-102
>d1dxja_ d.2.1.1 (A:) Plant class II chitinase {Jack bean (Canavalia ensiformis) [TaxId: 3823]} Length = 242 Back     information, alignment and structure

class: Alpha and beta proteins (a+b)
fold: Lysozyme-like
superfamily: Lysozyme-like
family: Family 19 glycosidase
domain: Plant class II chitinase
species: Jack bean (Canavalia ensiformis) [TaxId: 3823]
 Score =  307 bits (788), Expect = e-107
 Identities = 131/234 (55%), Positives = 167/234 (71%), Gaps = 4/234 (1%)

Query: 1   MFDDLLEYRNDERCPARGFYTYDAFIEAAQAFPGFGNSGNETMRKREIAAFFAQTGHETT 60
           +FD LL++RND  C  +GFY+Y+AF+ AA++F GFG +G+   RKRE+AAF AQT HETT
Sbjct: 10  LFDQLLKHRNDPACEGKGFYSYNAFVTAARSFGGFGTTGDTNTRKREVAAFLAQTSHETT 69

Query: 61  GGWPDAPGGEYAWGYCFISEVSPPSDYCDPNYPCRG--KYYGRGPIQLSWNYNYLRCGEG 118
           GG   +P G YAWGYCF++E    + YCDP  PC     YYGRGPIQL+ NYNY + G  
Sbjct: 70  GGAAGSPDGPYAWGYCFVTERDKSNKYCDPGTPCPAGKSYYGRGPIQLTHNYNYAQAGRA 129

Query: 119 LGLGEELLNNPDLLATDPVLSFKSAIWFWMTAQPPKPSCHEVIIDEWKPSANDVNAGRLP 178
           LG+     NNPDL+A D V+SFK+AIWFWMT Q  KPSCH+VI + W PSA DV A R P
Sbjct: 130 LGVDLI--NNPDLVARDAVISFKTAIWFWMTPQGNKPSCHDVITNRWTPSAADVAANRTP 187

Query: 179 GYGLTTNIINGGIECGQGGNAAVRNRIGFFTTFCGKFGIQPGDSLDCYNQRPYG 232
           G+G+ TNIINGGIECG+G + A  +RIGF+  +C    +  G +L+C +QRP+G
Sbjct: 188 GFGVITNIINGGIECGRGPSPASGDRIGFYKRYCDVLHLSYGPNLNCRDQRPFG 241


>d2baaa_ d.2.1.1 (A:) Plant class II chitinase {Barley (Hordeum vulgare) [TaxId: 4513]} Length = 243 Back     information, alignment and structure

Homologous Domains Detected by HHsearch ?

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query240
d2baaa_243 Plant class II chitinase {Barley (Hordeum vulgare) 100.0
d1dxja_242 Plant class II chitinase {Jack bean (Canavalia ens 100.0
>d2baaa_ d.2.1.1 (A:) Plant class II chitinase {Barley (Hordeum vulgare) [TaxId: 4513]} Back     information, alignment and structure
class: Alpha and beta proteins (a+b)
fold: Lysozyme-like
superfamily: Lysozyme-like
family: Family 19 glycosidase
domain: Plant class II chitinase
species: Barley (Hordeum vulgare) [TaxId: 4513]
Probab=100.00  E-value=2.1e-77  Score=523.69  Aligned_cols=230  Identities=60%  Similarity=1.210  Sum_probs=224.3

Q ss_pred             ChhhhhcccCCCCCCCCCCCCHHHHHHHHHhCccCCCCCCcchhhHHHHHhhhhcccccCCCCCCCCCCCcccccccccc
Q 026315            1 MFDDLLEYRNDERCPARGFYTYDAFIEAAQAFPGFGNSGNETMRKREIAAFFAQTGHETTGGWPDAPGGEYAWGYCFISE   80 (240)
Q Consensus         1 ~f~~~f~~~~~~~~~~~~~~ty~~fi~A~~~~~~F~~~g~~~t~~re~A~FLAq~~hETg~~~~~~~~~~~~~g~~~~~E   80 (240)
                      |||+|||+||++.||+++||||++||+|+++||+|+++|+.++++||+|+||||++|||++++..+|+++|+|||++.+|
T Consensus        10 ~F~~~fp~r~~~~c~~~~fYty~~fi~Aa~~fp~F~~tg~~~~~krElAaFlAq~~hET~g~~~~~e~~~~~~g~~~~~e   89 (243)
T d2baaa_          10 QFDRMLLHRNDGACQAKGFYTYDAFVAAAAAFPGFGTTGSADAQKREVAAFLAQTSHETTGGWATAPDGAFAWGYCFKQE   89 (243)
T ss_dssp             HHHHHTTTTTSTTSTTTTTCCHHHHHHHHTTSTTTTCSSCHHHHHHHHHHHHHHHHHHTCCCCTTCTTCGGGCTTCCSBC
T ss_pred             HHHHHhhcCCCCCCCCCCCCcHHHHHHHHHhchhhcCCCchhhhHHHHHHhhcCcccccCCCcccCCCCchhhcccchhc
Confidence            69999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             cCCCCCCCC--CCCCCC--CCcccCCCccccchHHHHHHHhhcCCCCcccCCccccccCchhhhhhhHHHhHhCCCCCCC
Q 026315           81 VSPPSDYCD--PNYPCR--GKYYGRGPIQLSWNYNYLRCGEGLGLGEELLNNPDLLATDPVLSFKSAIWFWMTAQPPKPS  156 (240)
Q Consensus        81 ~~~~~~y~~--~~~p~~--~~Y~GRG~IQLTg~~NY~~~~~~lg~~~dl~~nPdlva~d~~~A~~sA~wfW~~~~~~~~s  156 (240)
                      .++..+||+  .++||.  ++|||||+||||||+||+++++++++  ||+++||+|++||.+|+++|+||||+.+.++|+
T Consensus        90 ~~~~~~yc~~~~~~pc~~G~~Y~GRG~iQLT~~~NY~~~g~~~g~--dl~~~Pdlva~d~~~a~~sA~wfW~t~~~~~~s  167 (243)
T d2baaa_          90 RGASSDYCTPSAQWPCAPGKRYYGRGPIQLSHNYNYGPAGRAIGV--DLLANPDLVATDATVGFKTAIWFWMTAQPPKPS  167 (243)
T ss_dssp             CSCCCCCCCCCSSSCCCTTCCCCCBTTTTBCSHHHHHHHHHHHTS--CTTTCTTHHHHCHHHHHHHHHHHHHCCCTTSCC
T ss_pred             cCCccccccCCCCCCCCCCCcccCCCcccccchhhHHHHHHHhCC--CccccccceeeccHHHHHHHHHHHhcCCCCCcc
Confidence            998899998  668987  99999999999999999999999999  899999999999999999999999999999999


Q ss_pred             cchhhcccCCCCccccccCCCCcccccceeeeCccccCCCCchHHHHHHHHHHHHHHHhCCCCCCCCcCCCCcCCC
Q 026315          157 CHEVIIDEWKPSANDVNAGRLPGYGLTTNIINGGIECGQGGNAAVRNRIGFFTTFCGKFGIQPGDSLDCYNQRPYG  232 (240)
Q Consensus       157 ~~~~~~~~w~~~~~d~~a~~~~~f~~vt~iINGg~ec~~~~~~g~~~R~~~y~~~~~~lgv~~g~~l~c~~~~~~~  232 (240)
                      +|++|+++|+|+..|..+++.++|+.||+|||||+||+++.+.++++|+++|++++++|||++|++|+|++|+||.
T Consensus       168 ~~~vi~g~w~p~~~d~a~~~~~gfg~tt~iINGg~ec~~~~~~~~~dRi~~Y~~~~~~lgv~~g~nl~C~~q~~f~  243 (243)
T d2baaa_         168 SHAVIAGQWSPSGADRAAGRVPGFGVITNIINGGIECGHGQDSRVADRIGFYKRYCDILGVGYGNNLDCYSQRPFA  243 (243)
T ss_dssp             HHHHHTTCCCCCHHHHHTTCCSSHHHHHHHHHHHHHSSSSCCHHHHHHHHHHHHHHHHHTCCCCSCCCCTTSCCCC
T ss_pred             HHHHHhccCCcccchhhhccCCCcceEEEEEECcccCCCCCchHHHHHHHHHHHHHHHhCCCCCCCcCCcCCCCCC
Confidence            9999999999999999888889999999999999999999999999999999999999999999999999999995



>d1dxja_ d.2.1.1 (A:) Plant class II chitinase {Jack bean (Canavalia ensiformis) [TaxId: 3823]} Back     information, alignment and structure