Citrus Sinensis ID: 026317

---

Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240
Protein Sequence
MTIHSSKHQDDVDKNARSSYFNLPALDISVAFPQATPASKFPPCASDYYQFDDLLTSEEQAVRMKVRECMEKEIAPIMAEYWEKAEFPFHVIPKLGALRVAGGTIKGYGCPGHSVTGAAIAIAEIARVDASCSTFILVHSSLAMLTIALCGSEEQKQKYLPSLAQLNTIACWALTEPAYGSDASALNTTATKVEGGWILEGQKRWIGNSTFADVLVIFARNTTTNQINGYANQSIKFVLL
Secondary Structure (PSIPRED)
ccccccccccHHHHHcccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHccccHHHHHHHHccccHHHHHHHHccccccccccccccccccHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHcccHHHHHHcccccccccEEEEEEccccccccccccccEEEEEEccEEEEcccEEEEcccccccEEEEEEEEcccccEEEEEEccccEEEc
Secondary Structure Prediction (SSPRO)
cEEEEccccccccHccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHcHHHHHHcHcccccHHHHHHHHHHccccccccccHHHcccHHHHHHHHHHHHHHcHHHHHHHHHHHHccHHHHHHHccHHHHHHHcHHHccccccEEEEccEccEcccHHHcccEEEEcccEEEEEEEEEEEEccccccEEEEEEEccHHHHHHcEEEEEEEEEEc
Coil and Loop (DISEMBL)
mtihsskhqddvdknarssyfnlpaldisvafpqatpaskfppcasdyyqfddLLTSEEQAVRMKVRECMEKEIAPIMAEYwekaefpfhvipklgALRVaggtikgygcpghsvTGAAIAIAEIARVDASCSTFILVHSSLAMLTIALCgseeqkqkyLPSLAQLNTIACWaltepaygsdasalnttatkveggwilegqkrwignstFADVLVIFARNtttnqingyanqsiKFVLL
Flexible Loop (DISEMBL)
mtihsskhqddvdknARSSYFNLPALDISVAFPQATPASKFPPCASDYYQFDDLLTSEEQAVRMKVRECMEKEIAPIMAEYWEKAEFPFHVIPKLGALRVAGGTIKGYGCPGHSVTGAAIAIAEIARVDASCSTFILVHSSLAMLTIALCGSEEQKQKYLPSLAQLNTIACWALTEPAYGSDASALNTTATKVEGGWILEGQKRWIGNSTFADVLVIFARNtttnqingyanqsikfvll
Low Complexity Region (SEG)
MTIHSSKHQDDVDKNARSSYFNLPALDISVAFPQATPASKFPPCASDYYQFDDLLTSEEQAVRMKVRECMEKEIAPIMAEYWEKAEFPFHVIPKLGALRVAGGTIKGYGCPGHSVTGAAIAIAEIARVDASCSTFILVHSSLAMLTIALCGSEEQKQKYLPSLAQLNTIACWALTEPAYGSDASALNTTATKVEGGWILEGQKRWIGNSTFADVLVIFARNTTTNQINGYANQSIKFVLL
Disordered region (IsUnstruct)
*******************YFNLPALDISVAFPQATPASKFPPCASDYYQFDDLLTSEEQAVRMKVRECMEKEIAPIMAEYWEKAEFPFHVIPKLGALRVAGGTIKGYGCPGHSVTGAAIAIAEIARVDASCSTFILVHSSLAMLTIALCGSEEQKQKYLPSLAQLNTIACWALTEPAYGSDASALNTTATKVEGGWILEGQKRWIGNSTFADVLVIFARNTTTNQINGYANQSIKFV**
Disordered Region (DISOPRED)
********************************************ASDYYQFDDLLTSEEQAVRMKVRECMEKEIAPIMAEYWEKAEFPFHVIPKLGALRVAGGTIKGYGCPGHSVTGAAIAIAEIARVDASCSTFILVHSSLAMLTIALCGSEEQKQKYLPSLAQLNTIACWALTEPAYGSDASALNTTATKVEGGWILEGQKRWIGNSTFADVLVIFARNTTTNQINGYANQSIKFVLL
Disordered Region (DISEMBL)
*************KNARSSYFNLPALDISVAFPQATPASKFPPCASDYYQFDDLLTSEEQAVRMKVRECMEKEIAPIMAEYWEKAEFPFHVIPKLGALRVAGGTIKGYGCPGHSVTGAAIAIAEIARVDASCSTFILVHSSLAMLTIALCGSEEQKQKYLPSLAQLNTIACWALTEPAYGSDASALNTTATKVEGGWILEGQKRWIGNSTFADVLVIFARNTTTNQINGYANQSIKFVLL
Disordered Region (DISPRO)
******************SYFNLPALDISVAFPQATPASKFPPCASDYYQFDDLLTSEEQAVRMKVRECMEKEIAPIMAEYWEKAEFPFHVIPKLGALRVAGGTIKGYGCPGHSVTGAAIAIAEIARVDASCSTFILVHSSLAMLTIALCGSEEQKQKYLPSLAQLNTIACWALTEPAYGSDASALNTTATKVEGGWILEGQKRWIGNSTFADVLVIFARNTTTNQINGYANQSIKFVLL
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Signal Peptide (SignalP NN Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Coiled Coils (COILS)
MTIHSSKHQDDVDKNARSSYFNLPALDISVAFPQATPASKFPPCASDYYQFDDLLTSEEQAVRMKVRECMEKEIAPIMAEYWEKAEFPFHVIPKLGALRVAGGTIKGYGCPGHSVTGAAIAIAEIARVDASCSTFILVHSSLAMLTIALCGSEEQKQKYLPSLAQLNTIACWALTEPAYGSDASALNTTATKVEGGWILEGQKRWIGNSTFADVLVIFARNTTTNQINGYANQSIKFVLL
Positional Conservation
no confident homologs detected

---

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	240	2.2.26 [Sep-21-2011]
Q96329	436	Acyl-coenzyme A oxidase 4	yes	no	0.958	0.527	0.778	1e-107
Q20772	409	Probable glutaryl-CoA deh	yes	no	0.766	0.449	0.358	8e-30
P45857	379	Acyl-CoA dehydrogenase OS	yes	no	0.683	0.432	0.419	7e-27
Q60759	438	Glutaryl-CoA dehydrogenas	yes	no	0.812	0.445	0.361	2e-25
Q92947	438	Glutaryl-CoA dehydrogenas	yes	no	0.725	0.397	0.380	4e-25
Q2KHZ9	438	Glutaryl-CoA dehydrogenas	yes	no	0.725	0.397	0.375	5e-25
Q8HXX8	438	Glutaryl-CoA dehydrogenas	N/A	no	0.762	0.417	0.365	1e-24
P81140	408	Glutaryl-CoA dehydrogenas	no	no	0.745	0.438	0.371	1e-23
P52042	379	Acyl-CoA dehydrogenase, s	yes	no	0.729	0.461	0.375	4e-23
Q54R47	420	Glutaryl-CoA dehydrogenas	no	no	0.812	0.464	0.323	3e-22

>sp|Q96329|ACOX4_ARATH Acyl-coenzyme A oxidase 4, peroxisomal OS=Arabidopsis thaliana GN=ACX4 PE=1 SV=1

 Score =  387 bits (995), Expect = e-107,   Method: Compositional matrix adjust.
 Identities = 179/230 (77%), Positives = 200/230 (86%)

Query: 1   MTIHSSKHQDDVDKNARSSYFNLPALDISVAFPQATPASKFPPCASDYYQFDDLLTSEEQ 60
           M + SS  +   +K  +SSYF+LP +++SVAFPQATPAS FPPC SDYY F+DLLT EEQ
Sbjct: 1   MAVLSSADRASNEKKVKSSYFDLPPMEMSVAFPQATPASTFPPCTSDYYHFNDLLTPEEQ 60

Query: 61  AVRMKVRECMEKEIAPIMAEYWEKAEFPFHVIPKLGALRVAGGTIKGYGCPGHSVTGAAI 120
           A+R KVRECMEKE+APIM EYWEKAEFPFH+ PKLGA+ VAGG+IKGYGCPG S+T  AI
Sbjct: 61  AIRKKVRECMEKEVAPIMTEYWEKAEFPFHITPKLGAMGVAGGSIKGYGCPGLSITANAI 120

Query: 121 AIAEIARVDASCSTFILVHSSLAMLTIALCGSEEQKQKYLPSLAQLNTIACWALTEPAYG 180
           A AEIARVDASCSTFILVHSSL MLTIALCGSE QK+KYLPSLAQLNT+ACWALTEP  G
Sbjct: 121 ATAEIARVDASCSTFILVHSSLGMLTIALCGSEAQKEKYLPSLAQLNTVACWALTEPDNG 180

Query: 181 SDASALNTTATKVEGGWILEGQKRWIGNSTFADVLVIFARNTTTNQINGY 230
           SDAS L TTATKVEGGW + GQKRWIGNSTFAD+L+IFARNTTTNQING+
Sbjct: 181 SDASGLGTTATKVEGGWKINGQKRWIGNSTFADLLIIFARNTTTNQINGF 230

Catalyzes the desaturation of short-chain acyl-CoAs to 2-trans-enoyl-CoAs. Active on butyryl-CoA (C4), hexanoyl-CoA (C6), and octanoyl-CoA (C8). Has no activity as acyl-CoA dehydrogenase or on crotonyl-CoA (an unsaturated C4:1 carbocyclic ester) or glutaryl-CoA (a dicarboxylic ester).
Arabidopsis thaliana (taxid: 3702)
EC: 1EC: .EC: 3EC: .EC: 3EC: .EC: 6

>sp|Q20772|GCDH_CAEEL Probable glutaryl-CoA dehydrogenase, mitochondrial OS=Caenorhabditis elegans GN=F54D5.7 PE=1 SV=1

 Score =  130 bits (327), Expect = 8e-30,   Method: Compositional matrix adjust.
 Identities = 67/187 (35%), Positives = 108/187 (57%), Gaps = 3/187 (1%)

Query: 47  DYYQFDDLLTSEEQAVRMKVRECMEKEIAPIMAEYWEKAEFPFHVIPKLGALRVAGGTIK 106
           D +Q  D LT +E+++ +  RE  ++ + P + E +   +F   +IP++G++ + G   +
Sbjct: 24  DAFQLSDQLTEDERSLMLSAREYCQERLLPRVTEAYRTEKFDPSLIPEMGSMGLLGAPYQ 83

Query: 107 GYGCPGHSVTGAAIAIAEIARVDASCSTFILVHSSLAMLTIALCGSEEQKQKYLPSLAQL 166
           GYGC G S  G  +   E+ RVD+   + + V +SL +  I   GSE+QKQKY+P LA  
Sbjct: 84  GYGCAGTSTVGYGLIAREVERVDSGYRSTMSVQTSLVIGPIYNYGSEDQKQKYIPDLASG 143

Query: 167 NTIACWALTEPAYGSDASALNTTAT--KVEGGWILEGQKRWIGNSTFADVLVIFARNTT- 223
             I C+ LTEP +GS+   + T AT  +    + L G K WI NS  +DV+V++AR+   
Sbjct: 144 KKIGCFGLTEPNHGSNPGGMETKATWDETTKTYKLNGSKTWISNSPVSDVMVVWARSARH 203

Query: 224 TNQINGY 230
            N+I G+
Sbjct: 204 NNKIKGF 210

Caenorhabditis elegans (taxid: 6239)

EC: 1

EC: .

EC: 3

EC: .

EC: 9

EC: 9

EC: .

EC: 7

>sp|P45857|ACDB_BACSU Acyl-CoA dehydrogenase OS=Bacillus subtilis (strain 168) GN=mmgC PE=2 SV=3

 Score =  120 bits (302), Expect = 7e-27,   Method: Compositional matrix adjust.
 Identities = 70/167 (41%), Positives = 98/167 (58%), Gaps = 3/167 (1%)

Query: 55  LTSEEQAVRMKVRECMEKEIAPIMAEYWEKA-EFPFHVIPKLGALRVAGGTI-KGYGCPG 112
           +T E+  +R  VR+   KEIAP  AE  EK  EFPF +I K+G   + G  + + YG  G
Sbjct: 3   VTQEQVMMRKMVRDFARKEIAP-AAEIMEKTDEFPFQLIKKMGKHGLMGIPVPEQYGGAG 61

Query: 113 HSVTGAAIAIAEIARVDASCSTFILVHSSLAMLTIALCGSEEQKQKYLPSLAQLNTIACW 172
             V    +AI EI+R+ A+    + VH+S+    I   G+EEQK KY+P+LA  + +  +
Sbjct: 62  ADVVSYILAIHEISRISAAVGVILSVHTSVGTNPILYFGNEEQKMKYIPNLASGDHLGAF 121

Query: 173 ALTEPAYGSDASALNTTATKVEGGWILEGQKRWIGNSTFADVLVIFA 219
           ALTEP  GSDA +L TTA K  G ++L G K +I N   AD+ + FA
Sbjct: 122 ALTEPHSGSDAGSLRTTAIKKNGKYLLNGSKIFITNGGAADIYITFA 168

Bacillus subtilis (strain 168) (taxid: 224308)

EC: 1

EC: .

EC: 3

EC: .

EC: 9

EC: 9

EC: .

EC: -

>sp|Q60759|GCDH_MOUSE Glutaryl-CoA dehydrogenase, mitochondrial OS=Mus musculus GN=Gcdh PE=2 SV=2

 Score =  116 bits (290), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 73/202 (36%), Positives = 105/202 (51%), Gaps = 7/202 (3%)

Query: 34  QATPASKFPPCAS--DYYQFDDLLTSEEQAVRMKVRE-CMEKEIAPIMAEYWEKAEFPFH 90
           Q  PA    P     D    ++ LT++E+ +R   R  C E+ ++ I+     +  F   
Sbjct: 37  QIRPAKSSRPVFDWKDPLILEEQLTADEKLIRDTFRNYCQERLMSRILLANRNEV-FHRD 95

Query: 91  VIPKLGALRVAGGTIKGYGCPGHSVTGAAIAIAEIARVDASCSTFILVHSSLAMLTIALC 150
           ++ ++G L V G TIKGYGC G S     +   E+ RVD+   + + V SSL M  I   
Sbjct: 96  IVYEMGELGVLGPTIKGYGCAGVSSVAYGLLTRELERVDSGYRSMMSVQSSLVMHPIYTY 155

Query: 151 GSEEQKQKYLPSLAQLNTIACWALTEPAYGSDASALNTTATK--VEGGWILEGQKRWIGN 208
           GSEEQ+QKYLP LA+   + C+ LTEP +GSD   + T A        + L G K WI N
Sbjct: 156 GSEEQRQKYLPGLAKGELLGCFGLTEPNHGSDPGGMETRARHNPSNQSYTLSGTKTWITN 215

Query: 209 STFADVLVIFARNTTTNQINGY 230
           S  AD+ +++AR    N I G+
Sbjct: 216 SPVADLFIVWAR-CEDNCIRGF 236

Catalyzes the oxidative decarboxylation of glutaryl-CoA to crotonyl-CoA and CO(2) in the degradative pathway of L-lysine, L-hydroxylysine, and L-tryptophan metabolism. It uses electron transfer flavoprotein as its electron acceptor.

Mus musculus (taxid: 10090)

EC: 1

EC: .

EC: 3

EC: .

EC: 9

EC: 9

EC: .

EC: 7

>sp|Q92947|GCDH_HUMAN Glutaryl-CoA dehydrogenase, mitochondrial OS=Homo sapiens GN=GCDH PE=1 SV=1

 Score =  114 bits (286), Expect = 4e-25,   Method: Compositional matrix adjust.
 Identities = 67/176 (38%), Positives = 94/176 (53%), Gaps = 2/176 (1%)

Query: 47  DYYQFDDLLTSEEQAVRMKVRECMEKEIAPIMAEYWEKAEFPFHVIPKLGALRVAGGTIK 106
           D    ++ LT++E  +R   R   ++ + P +        F   +I ++G L V G TIK
Sbjct: 52  DPLVLEEQLTTDEILIRDTFRTYCQERLMPRILLANRNEVFHREIISEMGELGVLGPTIK 111

Query: 107 GYGCPGHSVTGAAIAIAEIARVDASCSTFILVHSSLAMLTIALCGSEEQKQKYLPSLAQL 166
           GYGC G S     +   E+ RVD+   + + V SSL M  I   GSEEQ+QKYLP LA+ 
Sbjct: 112 GYGCAGVSSVAYGLLARELERVDSGYRSAMSVQSSLVMHPIYAYGSEEQRQKYLPQLAKG 171

Query: 167 NTIACWALTEPAYGSDASALNTTA--TKVEGGWILEGQKRWIGNSTFADVLVIFAR 220
             + C+ LTEP  GSD S++ T A        + L G K WI NS  AD+ V++AR
Sbjct: 172 ELLGCFGLTEPNSGSDPSSMETRAHYNSSNKSYTLNGTKTWITNSPMADLFVVWAR 227

Catalyzes the oxidative decarboxylation of glutaryl-CoA to crotonyl-CoA and CO(2) in the degradative pathway of L-lysine, L-hydroxylysine, and L-tryptophan metabolism. It uses electron transfer flavoprotein as its electron acceptor. Isoform Short is inactive.

Homo sapiens (taxid: 9606)

EC: 1

EC: .

EC: 3

EC: .

EC: 9

EC: 9

EC: .

EC: 7

>sp|Q2KHZ9|GCDH_BOVIN Glutaryl-CoA dehydrogenase, mitochondrial OS=Bos taurus GN=GCDH PE=2 SV=1

 Score =  114 bits (286), Expect = 5e-25,   Method: Compositional matrix adjust.
 Identities = 66/176 (37%), Positives = 95/176 (53%), Gaps = 2/176 (1%)

Query: 47  DYYQFDDLLTSEEQAVRMKVRECMEKEIAPIMAEYWEKAEFPFHVIPKLGALRVAGGTIK 106
           D    ++ LT++E  +R   R   ++ + P +        F   +I ++G L + G TI+
Sbjct: 52  DPLLLEEQLTADEILIRDTFRTYCQERLMPRILLANRNEVFHREIISEMGELGMLGPTIQ 111

Query: 107 GYGCPGHSVTGAAIAIAEIARVDASCSTFILVHSSLAMLTIALCGSEEQKQKYLPSLAQL 166
           GY C G S     +   E+ RVD+   + + V SSL M  I   GSEEQKQKYLP LA+ 
Sbjct: 112 GYSCAGVSSVAYGLLARELERVDSGYRSAMSVQSSLVMYPIYAYGSEEQKQKYLPRLAKG 171

Query: 167 NTIACWALTEPAYGSDASALNTTATK--VEGGWILEGQKRWIGNSTFADVLVIFAR 220
             + C+ LTEP +GSD S + T A        +IL G K WI NS  AD+L+++AR
Sbjct: 172 ELLGCFGLTEPNHGSDPSGMETRARHNPSSRSYILSGSKTWITNSPVADLLIVWAR 227

Catalyzes the oxidative decarboxylation of glutaryl-CoA to crotonyl-CoA and CO(2) in the degradative pathway of L-lysine, L-hydroxylysine, and L-tryptophan metabolism. It uses electron transfer flavoprotein as its electron acceptor.

Bos taurus (taxid: 9913)

EC: 1

EC: .

EC: 3

EC: .

EC: 9

EC: 9

EC: .

EC: 7

>sp|Q8HXX8|GCDH_MACFA Glutaryl-CoA dehydrogenase, mitochondrial OS=Macaca fascicularis GN=GCDH PE=2 SV=1

 Score =  113 bits (283), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 68/186 (36%), Positives = 97/186 (52%), Gaps = 3/186 (1%)

Query: 47  DYYQFDDLLTSEEQAVRMKVRECMEKEIAPIMAEYWEKAEFPFHVIPKLGALRVAGGTIK 106
           D    ++ LT++E  +R   R   ++ + P +        F   +I ++G L V G TIK
Sbjct: 52  DPLVLEEQLTTDEILIRDTFRTYCQERLMPRILLANRNEVFHREIISQMGELGVLGPTIK 111

Query: 107 GYGCPGHSVTGAAIAIAEIARVDASCSTFILVHSSLAMLTIALCGSEEQKQKYLPSLAQL 166
           GYGC G S     +   E+ RVD+   + + V S L M  I   GSEEQ+QKYLP LA+ 
Sbjct: 112 GYGCAGVSSVAYGLLARELERVDSGYRSAMSVQSPLVMHPIYAYGSEEQRQKYLPRLAKG 171

Query: 167 NTIACWALTEPAYGSDASALNTTA--TKVEGGWILEGQKRWIGNSTFADVLVIFARNTTT 224
             + C+ LTEP  GSD S++ T A        + L G K WI NS  AD+ V++AR    
Sbjct: 172 ELLGCFGLTEPNSGSDPSSMETRARYNSSNKSYTLNGTKTWITNSPMADLFVVWAR-CED 230

Query: 225 NQINGY 230
            +I G+
Sbjct: 231 GRIRGF 236

Catalyzes the oxidative decarboxylation of glutaryl-CoA to crotonyl-CoA and CO(2) in the degradative pathway of L-lysine, L-hydroxylysine, and L-tryptophan metabolism. It uses electron transfer flavoprotein as its electron acceptor.

Macaca fascicularis (taxid: 9541)

EC: 1

EC: .

EC: 3

EC: .

EC: 9

EC: 9

EC: .

EC: 7

>sp|P81140|GCDH_PIG Glutaryl-CoA dehydrogenase, mitochondrial (Fragment) OS=Sus scrofa GN=GCDH PE=1 SV=1

 Score =  110 bits (274), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 68/183 (37%), Positives = 97/183 (53%), Gaps = 4/183 (2%)

Query: 51  FDDLLTSEEQAVRMKVRECMEKEIAPIMAEYWEKAEFPFHVIPKLGALRVAGGTIKGYGC 110
            ++ LT++E  +R   R   ++ + P +        F   +I ++G L V G TIKGYGC
Sbjct: 25  LEEQLTADEILIRDTFRTYCQEHLMPRIVLANRNEVFHREIISEMGELGVLGPTIKGYGC 84

Query: 111 PGHSVTGAAIAIAEIARVDASCSTFILVHSSLAMLTIALCGSEE-QKQKYLPSLAQLNTI 169
            G S     +   E+ RVD+   + + V SSL M  I   GSEE Q+QKYLP LA+   +
Sbjct: 85  AGVSSVAYGLLARELERVDSGYRSAMSVQSSLVMHPIYAYGSEEQQQQKYLPRLAKGELL 144

Query: 170 ACWALTEPAYGSDASALNTTA--TKVEGGWILEGQKRWIGNSTFADVLVIFARNTTTNQI 227
            C+ LTEP +GSD  ++ T A        + L G K WI NS  AD+ V++AR    N I
Sbjct: 145 GCFGLTEPNHGSDPGSMETRALHNPSNRSYTLNGAKTWITNSPVADLFVVWAR-CEDNCI 203

Query: 228 NGY 230
            G+
Sbjct: 204 RGF 206

Catalyzes the oxidative decarboxylation of glutaryl-CoA to crotonyl-CoA and CO(2) in the degradative pathway of L-lysine, L-hydroxylysine, and L-tryptophan metabolism. It uses electron transfer flavoprotein as its electron acceptor.

Sus scrofa (taxid: 9823)

EC: 1

EC: .

EC: 3

EC: .

EC: 9

EC: 9

EC: .

EC: 7

>sp|P52042|ACDS_CLOAB Acyl-CoA dehydrogenase, short-chain specific OS=Clostridium acetobutylicum (strain ATCC 824 / DSM 792 / JCM 1419 / LMG 5710 / VKM B-1787) GN=bcd PE=3 SV=1

 Score =  108 bits (270), Expect = 4e-23,   Method: Compositional matrix adjust.
 Identities = 66/176 (37%), Positives = 88/176 (50%), Gaps = 1/176 (0%)

Query: 55  LTSEEQAVRMKVRECMEKEIAPIMAEYWEKAEFPFHVIPKLGALRVAGGTI-KGYGCPGH 113
           LT E++ VR  VRE  E E+ PI AE  E   FP   + K+G   + G    K YG  G 
Sbjct: 5   LTREQELVRQMVREFAENEVKPIAAEIDETERFPMENVKKMGQYGMMGIPFSKEYGGAGG 64

Query: 114 SVTGAAIAIAEIARVDASCSTFILVHSSLAMLTIALCGSEEQKQKYLPSLAQLNTIACWA 173
            V    IA+ E+++V  +    +  H+SL    I   G+EEQKQKYL  LA+   I  + 
Sbjct: 65  DVLSYIIAVEELSKVCGTTGVILSAHTSLCASLINEHGTEEQKQKYLVPLAKGEKIGAYG 124

Query: 174 LTEPAYGSDASALNTTATKVEGGWILEGQKRWIGNSTFADVLVIFARNTTTNQING 229
           LTEP  G+D+ A  T A      +++ G K +I N   AD  VIFA    T    G
Sbjct: 125 LTEPNAGTDSGAQQTVAVLEGDHYVINGSKIFITNGGVADTFVIFAMTDRTKGTKG 180

Clostridium acetobutylicum (strain ATCC 824 / DSM 792 / JCM 1419 / LMG 5710 / VKM B-1787) (taxid: 272562)

EC: 1

EC: .

EC: 3

EC: .

EC: 8

EC: .

EC: 1

>sp|Q54R47|GCDH_DICDI Glutaryl-CoA dehydrogenase, mitochondrial OS=Dictyostelium discoideum GN=gcdh PE=3 SV=1

 Score =  105 bits (262), Expect = 3e-22,   Method: Compositional matrix adjust.
 Identities = 65/201 (32%), Positives = 100/201 (49%), Gaps = 6/201 (2%)

Query: 31  AFPQATPASKFPPCASDYYQFDDLLTSEEQAVRMKVRECMEKEIAPIMAEYWEKAEFPFH 90
           +F    P  KF    +D    + LLT EE  +R +V +  + E+ P +   +   +F   
Sbjct: 27  SFGTIVPGDKFE--WNDPLSLESLLTEEEVMIRDQVNKFCQDELMPRIQMAYRDEKFDRE 84

Query: 91  VIPKLGALRVAGGTIKGYGCPGHSVTGAAIAIAEIARVDASCSTFILVHSSLAMLTIALC 150
           ++ + G + + G TI  YG   H   G  +    + +VD+   + + V SSL M  I   
Sbjct: 85  IMREYGKMGMLGATIPAYGGVSHVAYG--LMANAVEKVDSGYRSAMSVQSSLVMHPINTF 142

Query: 151 GSEEQKQKYLPSLAQLNTIACWALTEPAYGSDASALNTTATKVE-GGWILEGQKRWIGNS 209
           G++ QK KYL  LA  + + C+ LTEP  GSD + + T A K   G ++L G K WI NS
Sbjct: 143 GTDAQKSKYLDGLASGDLVGCFGLTEPNAGSDPAGMQTRAVKNSAGNYVLNGTKTWITNS 202

Query: 210 TFADVLVIFARNTTTNQINGY 230
             ADV V++A+      I G+
Sbjct: 203 PIADVFVVWAK-VENGDIRGF 222

Dictyostelium discoideum (taxid: 44689)

EC: 1

EC: .

EC: 3

EC: .

EC: 9

EC: 9

EC: .

EC: 7

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	240
359481157	439	PREDICTED: acyl-coenzyme A oxidase 4, pe	0.958	0.523	0.852	1e-116
255582668	440	acyl-CoA dehydrogenase, putative [Ricinu	0.958	0.522	0.831	1e-114
359481155	446	PREDICTED: acyl-coenzyme A oxidase 4, pe	0.945	0.508	0.850	1e-114
224139128	437	predicted protein [Populus trichocarpa]	0.933	0.512	0.843	1e-113
402715756	437	acyl-CoA oxidase 4 [Prunus persica]	0.929	0.510	0.847	1e-113
351722526	400	acyl-CoA oxidase [Glycine max] gi|156972	0.958	0.575	0.826	1e-111
356521028	421	PREDICTED: acyl-coenzyme A oxidase 4, pe	0.883	0.503	0.863	1e-107
224087764	436	predicted protein [Populus trichocarpa]	0.929	0.511	0.808	1e-107
449439864	440	PREDICTED: acyl-coenzyme A oxidase 4, pe	0.958	0.522	0.779	1e-106
297819888	436	acyl-CoA oxidase 4 [Arabidopsis lyrata s	0.958	0.527	0.778	1e-106

>gi|359481157|ref|XP_003632582.1| PREDICTED: acyl-coenzyme A oxidase 4, peroxisomal-like isoform 2 [Vitis vinifera]

 Score =  421 bits (1083), Expect = e-116,   Method: Compositional matrix adjust.
 Identities = 196/230 (85%), Positives = 212/230 (92%)

Query: 1   MTIHSSKHQDDVDKNARSSYFNLPALDISVAFPQATPASKFPPCASDYYQFDDLLTSEEQ 60
           MTI+SS + DD +K  + SYF LP+LD+SVAFPQATPAS FPPCASDYYQFDDLLT EEQ
Sbjct: 1   MTIYSSNNADDSEKAKKGSYFGLPSLDVSVAFPQATPASIFPPCASDYYQFDDLLTPEEQ 60

Query: 61  AVRMKVRECMEKEIAPIMAEYWEKAEFPFHVIPKLGALRVAGGTIKGYGCPGHSVTGAAI 120
           A+RMKVR+C+EKEIAPIM EYWEKAEFPFHV+PKL ALR+AGGTIKGYGCPG SVT +AI
Sbjct: 61  ALRMKVRKCVEKEIAPIMTEYWEKAEFPFHVVPKLAALRIAGGTIKGYGCPGLSVTASAI 120

Query: 121 AIAEIARVDASCSTFILVHSSLAMLTIALCGSEEQKQKYLPSLAQLNTIACWALTEPAYG 180
             AE++RVDASCSTFILVHSSLAMLTIALCGSE QKQKYLPSLAQLNTIACWALTEP YG
Sbjct: 121 TTAEVSRVDASCSTFILVHSSLAMLTIALCGSEAQKQKYLPSLAQLNTIACWALTEPDYG 180

Query: 181 SDASALNTTATKVEGGWILEGQKRWIGNSTFADVLVIFARNTTTNQINGY 230
           SDAS+L TTATKVEGGWILEGQKRWIGNSTFADVL+IFARNTTTNQINGY
Sbjct: 181 SDASSLKTTATKVEGGWILEGQKRWIGNSTFADVLIIFARNTTTNQINGY 230

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255582668|ref|XP_002532113.1| acyl-CoA dehydrogenase, putative [Ricinus communis] gi|223528216|gb|EEF30275.1| acyl-CoA dehydrogenase, putative [Ricinus communis]

 Score =  416 bits (1070), Expect = e-114,   Method: Compositional matrix adjust.
 Identities = 192/231 (83%), Positives = 215/231 (93%), Gaps = 1/231 (0%)

Query: 1   MTIH-SSKHQDDVDKNARSSYFNLPALDISVAFPQATPASKFPPCASDYYQFDDLLTSEE 59
           MTI+ SSK+QDD+D + +SSYFNLP L++S+AFPQATPAS FPPCASDY+Q DDLLT EE
Sbjct: 1   MTIYASSKNQDDLDHSQKSSYFNLPPLNVSIAFPQATPASIFPPCASDYFQLDDLLTPEE 60

Query: 60  QAVRMKVRECMEKEIAPIMAEYWEKAEFPFHVIPKLGALRVAGGTIKGYGCPGHSVTGAA 119
           QA+R+KVR+CMEKEIAPIM EYWEKA+FPFHVIPKLG LR+AGGTIKGYGCPG S+TG+A
Sbjct: 61  QAIRIKVRQCMEKEIAPIMTEYWEKAKFPFHVIPKLGTLRIAGGTIKGYGCPGLSLTGSA 120

Query: 120 IAIAEIARVDASCSTFILVHSSLAMLTIALCGSEEQKQKYLPSLAQLNTIACWALTEPAY 179
           +A AE+ARVDASCSTFILVHSSLAMLTIALCGSE QKQKYLPSLAQL+T+ACWALTEP Y
Sbjct: 121 VATAEVARVDASCSTFILVHSSLAMLTIALCGSEAQKQKYLPSLAQLSTVACWALTEPEY 180

Query: 180 GSDASALNTTATKVEGGWILEGQKRWIGNSTFADVLVIFARNTTTNQINGY 230
           GSDASAL TTA KVEGGWIL+GQKRWIGNSTFADVLV+FARNT+T QINGY
Sbjct: 181 GSDASALKTTARKVEGGWILDGQKRWIGNSTFADVLVVFARNTSTEQINGY 231

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|359481155|ref|XP_002264086.2| PREDICTED: acyl-coenzyme A oxidase 4, peroxisomal-like isoform 1 [Vitis vinifera] gi|296083170|emb|CBI22806.3| unnamed protein product [Vitis vinifera]

 Score =  416 bits (1068), Expect = e-114,   Method: Compositional matrix adjust.
 Identities = 193/227 (85%), Positives = 209/227 (92%)

Query: 4   HSSKHQDDVDKNARSSYFNLPALDISVAFPQATPASKFPPCASDYYQFDDLLTSEEQAVR 63
           +SS + DD +K  + SYF LP+LD+SVAFPQATPAS FPPCASDYYQFDDLLT EEQA+R
Sbjct: 11  YSSNNPDDSEKAKKGSYFGLPSLDVSVAFPQATPASIFPPCASDYYQFDDLLTPEEQALR 70

Query: 64  MKVRECMEKEIAPIMAEYWEKAEFPFHVIPKLGALRVAGGTIKGYGCPGHSVTGAAIAIA 123
           MKVR+C+EKEIAPIM EYWEKAEFPFHV+PKL ALR+AGGTIKGYGCPG SVT +AI  A
Sbjct: 71  MKVRKCVEKEIAPIMTEYWEKAEFPFHVVPKLAALRIAGGTIKGYGCPGLSVTASAITTA 130

Query: 124 EIARVDASCSTFILVHSSLAMLTIALCGSEEQKQKYLPSLAQLNTIACWALTEPAYGSDA 183
           E++RVDASCSTFILVHSSLAMLTIALCGSE QKQKYLPSLAQLNTIACWALTEP YGSDA
Sbjct: 131 EVSRVDASCSTFILVHSSLAMLTIALCGSEAQKQKYLPSLAQLNTIACWALTEPDYGSDA 190

Query: 184 SALNTTATKVEGGWILEGQKRWIGNSTFADVLVIFARNTTTNQINGY 230
           S+L TTATKVEGGWILEGQKRWIGNSTFADVL+IFARNTTTNQINGY
Sbjct: 191 SSLKTTATKVEGGWILEGQKRWIGNSTFADVLIIFARNTTTNQINGY 237

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224139128|ref|XP_002322987.1| predicted protein [Populus trichocarpa] gi|222867617|gb|EEF04748.1| predicted protein [Populus trichocarpa]

 Score =  413 bits (1062), Expect = e-113,   Method: Compositional matrix adjust.
 Identities = 189/224 (84%), Positives = 212/224 (94%)

Query: 7   KHQDDVDKNARSSYFNLPALDISVAFPQATPASKFPPCASDYYQFDDLLTSEEQAVRMKV 66
           K+QD+V++NARSSYFNLP LD+SVAFPQATPAS FPP  SDY+Q  DLLT+E+QA+RM+V
Sbjct: 5   KNQDEVEQNARSSYFNLPPLDVSVAFPQATPASTFPPSVSDYFQISDLLTAEDQAIRMRV 64

Query: 67  RECMEKEIAPIMAEYWEKAEFPFHVIPKLGALRVAGGTIKGYGCPGHSVTGAAIAIAEIA 126
           R+CMEKEIAPIMAEYWEKA+FPFHVIPKLGAL +AGGTIKGYGCPG S+T +A+AIAE+A
Sbjct: 65  RQCMEKEIAPIMAEYWEKAKFPFHVIPKLGALGIAGGTIKGYGCPGLSITTSAVAIAEVA 124

Query: 127 RVDASCSTFILVHSSLAMLTIALCGSEEQKQKYLPSLAQLNTIACWALTEPAYGSDASAL 186
           RVDASCSTFILVHSSLAMLTIALCGSEEQKQKYLPSLA+ +T+ACWALTEP YGSDAS+L
Sbjct: 125 RVDASCSTFILVHSSLAMLTIALCGSEEQKQKYLPSLAKFSTVACWALTEPDYGSDASSL 184

Query: 187 NTTATKVEGGWILEGQKRWIGNSTFADVLVIFARNTTTNQINGY 230
            TTATKVEGGWILEGQKRWIGNSTFAD+LVIFARNTTT+QINGY
Sbjct: 185 QTTATKVEGGWILEGQKRWIGNSTFADLLVIFARNTTTDQINGY 228

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|402715756|gb|AFQ93696.1| acyl-CoA oxidase 4 [Prunus persica]

 Score =  413 bits (1061), Expect = e-113,   Method: Compositional matrix adjust.
 Identities = 189/223 (84%), Positives = 207/223 (92%)

Query: 8   HQDDVDKNARSSYFNLPALDISVAFPQATPASKFPPCASDYYQFDDLLTSEEQAVRMKVR 67
           +QDDV+KN R++YFN PA+D+S+AFPQATPAS FPPC SDYYQFDDLLT EEQAVR++VR
Sbjct: 6   NQDDVNKNERTNYFNSPAMDVSLAFPQATPASTFPPCTSDYYQFDDLLTPEEQAVRLRVR 65

Query: 68  ECMEKEIAPIMAEYWEKAEFPFHVIPKLGALRVAGGTIKGYGCPGHSVTGAAIAIAEIAR 127
           +C+EK++APIMAEYWEKAEFPFHVIPK GALR+AGGTIKGYGCPG S+T  A A AEIAR
Sbjct: 66  QCLEKDVAPIMAEYWEKAEFPFHVIPKFGALRIAGGTIKGYGCPGLSITANAFATAEIAR 125

Query: 128 VDASCSTFILVHSSLAMLTIALCGSEEQKQKYLPSLAQLNTIACWALTEPAYGSDASALN 187
           VDASCSTF LVHSSLAMLTIALCGSE QKQ+YLPSLA+L T+ACWALTEP YGSDASAL 
Sbjct: 126 VDASCSTFFLVHSSLAMLTIALCGSEAQKQEYLPSLAELKTVACWALTEPDYGSDASALR 185

Query: 188 TTATKVEGGWILEGQKRWIGNSTFADVLVIFARNTTTNQINGY 230
           TTATKVEGGWILEGQKRWIGNSTFADVLVIFARNTTTNQINGY
Sbjct: 186 TTATKVEGGWILEGQKRWIGNSTFADVLVIFARNTTTNQINGY 228

Source: Prunus persica

Species: Prunus persica

Genus: Prunus

Family: Rosaceae

Order: Rosales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|351722526|ref|NP_001236991.1| acyl-CoA oxidase [Glycine max] gi|156972244|gb|ABU98950.1| acyl-CoA oxidase [Glycine max]

 Score =  407 bits (1047), Expect = e-111,   Method: Compositional matrix adjust.
 Identities = 190/230 (82%), Positives = 208/230 (90%)

Query: 1   MTIHSSKHQDDVDKNARSSYFNLPALDISVAFPQATPASKFPPCASDYYQFDDLLTSEEQ 60
           M I+SSK+ D   +NA  SYF  P LD+S AFPQATPAS FPPCASDY+Q D+LLT+EEQ
Sbjct: 1   MAINSSKNPDGSVQNAMPSYFYSPPLDVSAAFPQATPASTFPPCASDYFQLDNLLTAEEQ 60

Query: 61  AVRMKVRECMEKEIAPIMAEYWEKAEFPFHVIPKLGALRVAGGTIKGYGCPGHSVTGAAI 120
           A+R KVRECMEKEIAPIM EYWEKA+FPFHVIPKLGALR+AGGTIK YGCPG S+TG+AI
Sbjct: 61  AIRKKVRECMEKEIAPIMTEYWEKAKFPFHVIPKLGALRIAGGTIKDYGCPGLSITGSAI 120

Query: 121 AIAEIARVDASCSTFILVHSSLAMLTIALCGSEEQKQKYLPSLAQLNTIACWALTEPAYG 180
           A+AE+ARVDASCSTFILVHSSLAMLTIALCGSE QKQKYLPSLAQL T+ACWALTEP YG
Sbjct: 121 AVAEVARVDASCSTFILVHSSLAMLTIALCGSEAQKQKYLPSLAQLQTVACWALTEPDYG 180

Query: 181 SDASALNTTATKVEGGWILEGQKRWIGNSTFADVLVIFARNTTTNQINGY 230
           SDASAL TTATKVEGGWILEGQKRWIGNSTFADVLV+FARN +TNQING+
Sbjct: 181 SDASALKTTATKVEGGWILEGQKRWIGNSTFADVLVVFARNASTNQINGF 230

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356521028|ref|XP_003529160.1| PREDICTED: acyl-coenzyme A oxidase 4, peroxisomal-like [Glycine max]

 Score =  394 bits (1012), Expect = e-107,   Method: Compositional matrix adjust.
 Identities = 183/212 (86%), Positives = 196/212 (92%)

Query: 19  SYFNLPALDISVAFPQATPASKFPPCASDYYQFDDLLTSEEQAVRMKVRECMEKEIAPIM 78
           SYFNLPALD+SVAFPQATPAS FPPCASDY+ F+DLL  EEQAVR KVRECMEKEIAPIM
Sbjct: 3   SYFNLPALDVSVAFPQATPASNFPPCASDYFHFNDLLKPEEQAVRNKVRECMEKEIAPIM 62

Query: 79  AEYWEKAEFPFHVIPKLGALRVAGGTIKGYGCPGHSVTGAAIAIAEIARVDASCSTFILV 138
            EYWEKAEFPFHVIPK  ALR+AGGTIKGYGCPG S+TG+A+A AE+ARVDASCSTF LV
Sbjct: 63  TEYWEKAEFPFHVIPKFAALRIAGGTIKGYGCPGLSITGSAVATAEVARVDASCSTFYLV 122

Query: 139 HSSLAMLTIALCGSEEQKQKYLPSLAQLNTIACWALTEPAYGSDASALNTTATKVEGGWI 198
           HSSLAMLTIALCGSE QKQKYLPSLAQ+ TIACWALTEP YGSDASAL TTATK++ GWI
Sbjct: 123 HSSLAMLTIALCGSEAQKQKYLPSLAQMKTIACWALTEPDYGSDASALKTTATKLQCGWI 182

Query: 199 LEGQKRWIGNSTFADVLVIFARNTTTNQINGY 230
           L+GQKRWIGNSTFAD+LVIFARNTTTNQINGY
Sbjct: 183 LDGQKRWIGNSTFADLLVIFARNTTTNQINGY 214

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224087764|ref|XP_002308225.1| predicted protein [Populus trichocarpa] gi|222854201|gb|EEE91748.1| predicted protein [Populus trichocarpa]

 Score =  394 bits (1011), Expect = e-107,   Method: Compositional matrix adjust.
 Identities = 181/224 (80%), Positives = 203/224 (90%), Gaps = 1/224 (0%)

Query: 7   KHQDDVDKNARSSYFNLPALDISVAFPQATPASKFPPCASDYYQFDDLLTSEEQAVRMKV 66
           K++D+V++N RSSYFNLP LD+SVAFPQATP S FPP  SDYYQF DLLT E+QA+RM+V
Sbjct: 5   KNKDEVEQNPRSSYFNLPPLDVSVAFPQATPVSTFPPSVSDYYQFSDLLTVEDQALRMRV 64

Query: 67  RECMEKEIAPIMAEYWEKAEFPFHVIPKLGALRVAGGTIKGYGCPGHSVTGAAIAIAEIA 126
           RECMEKEIAP+M EYWEKA+FPFH IPKLGAL +AGGTIKGYGCPG S+T +AIA+AE+A
Sbjct: 65  RECMEKEIAPMMTEYWEKAKFPFHAIPKLGALGIAGGTIKGYGCPGLSITASAIAMAEVA 124

Query: 127 RVDASCSTFILVHSSLAMLTIALCGSEEQKQKYLPSLAQLNTIACWALTEPAYGSDASAL 186
           RVDASCSTFILVH SLAMLTIA CGSEEQK KYLPSLAQ +T+ACWALTEP YGSDAS L
Sbjct: 125 RVDASCSTFILVH-SLAMLTIAFCGSEEQKLKYLPSLAQFSTVACWALTEPDYGSDASGL 183

Query: 187 NTTATKVEGGWILEGQKRWIGNSTFADVLVIFARNTTTNQINGY 230
            TTA KVEGGWILEG+KRWIGNSTFAD+LV+FARNTTTNQING+
Sbjct: 184 KTTAIKVEGGWILEGKKRWIGNSTFADLLVVFARNTTTNQINGF 227

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449439864|ref|XP_004137705.1| PREDICTED: acyl-coenzyme A oxidase 4, peroxisomal-like [Cucumis sativus] gi|449483509|ref|XP_004156611.1| PREDICTED: acyl-coenzyme A oxidase 4, peroxisomal-like [Cucumis sativus]

 Score =  392 bits (1006), Expect = e-106,   Method: Compositional matrix adjust.
 Identities = 180/231 (77%), Positives = 205/231 (88%), Gaps = 1/231 (0%)

Query: 1   MTIHSS-KHQDDVDKNARSSYFNLPALDISVAFPQATPASKFPPCASDYYQFDDLLTSEE 59
           MTI +    QDD DKNARSSYF LPALD+SVAFPQAT AS FPP  SD+YQF+DLLT EE
Sbjct: 1   MTIDAKMNRQDDKDKNARSSYFGLPALDVSVAFPQATSASSFPPSVSDFYQFNDLLTPEE 60

Query: 60  QAVRMKVRECMEKEIAPIMAEYWEKAEFPFHVIPKLGALRVAGGTIKGYGCPGHSVTGAA 119
           QA+R KVR+C+EKE+APIM +YWEKAEFPF ++PKL  L VAGGTIKGYGCPG ++TG+A
Sbjct: 61  QALRKKVRQCVEKEVAPIMTKYWEKAEFPFELVPKLANLGVAGGTIKGYGCPGLTITGSA 120

Query: 120 IAIAEIARVDASCSTFILVHSSLAMLTIALCGSEEQKQKYLPSLAQLNTIACWALTEPAY 179
           IA+AE+ARVDASCSTFILVHSSLAMLTIALCGSEEQKQKYLPSLA+ +T+ACW LTEP  
Sbjct: 121 IAVAEVARVDASCSTFILVHSSLAMLTIALCGSEEQKQKYLPSLAKFDTVACWGLTEPEN 180

Query: 180 GSDASALNTTATKVEGGWILEGQKRWIGNSTFADVLVIFARNTTTNQINGY 230
           GSDAS L TTATKVEGGW++EG+KRWIGNSTFAD+LVIFARNT TN+ING+
Sbjct: 181 GSDASGLRTTATKVEGGWVIEGRKRWIGNSTFADILVIFARNTITNEINGF 231

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297819888|ref|XP_002877827.1| acyl-CoA oxidase 4 [Arabidopsis lyrata subsp. lyrata] gi|297323665|gb|EFH54086.1| acyl-CoA oxidase 4 [Arabidopsis lyrata subsp. lyrata]

 Score =  391 bits (1004), Expect = e-106,   Method: Compositional matrix adjust.
 Identities = 179/230 (77%), Positives = 202/230 (87%)

Query: 1   MTIHSSKHQDDVDKNARSSYFNLPALDISVAFPQATPASKFPPCASDYYQFDDLLTSEEQ 60
           MT+ SS  +   +K  +SSYF+LP +++SVAFPQATPAS FPPC SDYY F+DLLT EEQ
Sbjct: 1   MTVLSSADRASTEKKVKSSYFDLPPMEMSVAFPQATPASTFPPCTSDYYHFNDLLTPEEQ 60

Query: 61  AVRMKVRECMEKEIAPIMAEYWEKAEFPFHVIPKLGALRVAGGTIKGYGCPGHSVTGAAI 120
           A+R KVRECMEKE+APIM EYWEKAEFPFH+ PKLGA+ VAGG+IKGYGCPG S+T  A+
Sbjct: 61  AIRKKVRECMEKEVAPIMTEYWEKAEFPFHITPKLGAMGVAGGSIKGYGCPGLSITANAV 120

Query: 121 AIAEIARVDASCSTFILVHSSLAMLTIALCGSEEQKQKYLPSLAQLNTIACWALTEPAYG 180
           A AEIARVDASCSTFILVHSSL MLTIALCGSE QK+KYLPSLAQLNT+ACWALTEP  G
Sbjct: 121 ATAEIARVDASCSTFILVHSSLGMLTIALCGSEAQKEKYLPSLAQLNTVACWALTEPDNG 180

Query: 181 SDASALNTTATKVEGGWILEGQKRWIGNSTFADVLVIFARNTTTNQINGY 230
           SDAS L TTATKVEGGW ++GQKRWIGNSTFAD+L+IFARNTTTNQING+
Sbjct: 181 SDASGLGTTATKVEGGWKIKGQKRWIGNSTFADLLIIFARNTTTNQINGF 230

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	240
TAIR|locus:2074403	436	ACX4 "acyl-CoA oxidase 4" [Ara	0.958	0.527	0.778	1.1e-96
DICTYBASE|DDB_G0274585	430	DDB_G0274585 "putative acyl-Co	0.795	0.444	0.438	6.1e-39
WB|WBGene00010052	409	F54D5.7 [Caenorhabditis elegan	0.766	0.449	0.358	4.4e-29
UNIPROTKB|Q47V61	394	gcdH "Glutaryl-CoA dehydrogena	0.758	0.461	0.401	7.1e-29
TIGR_CMR|CPS_4667	394	CPS_4667 "glutaryl-CoA dehydro	0.758	0.461	0.401	7.1e-29
ZFIN|ZDB-GENE-041010-117	427	gcdhl "glutaryl-Coenzyme A deh	0.75	0.421	0.386	4e-26
ASPGD|ASPL0000037782	424	AN2762 [Emericella nidulans (t	0.883	0.5	0.314	6.6e-26
UNIPROTKB|Q4KKG4	393	gcdH "Glutaryl-CoA dehydrogena	0.741	0.452	0.377	8.4e-26
FB|FBgn0031824	419	CG9547 [Drosophila melanogaste	0.762	0.436	0.370	1.8e-25
UNIPROTKB|P95208	395	fadE7 "Glutaryl-CoA dehydrogen	0.779	0.473	0.341	1.8e-25

TAIR|locus:2074403 ACX4 "acyl-CoA oxidase 4" [Arabidopsis thaliana (taxid:3702)]

 Score = 961 (343.3 bits), Expect = 1.1e-96, P = 1.1e-96
 Identities = 179/230 (77%), Positives = 200/230 (86%)

Query:     1 MTIHSSKHQDDVDKNARSSYFNLPALDISVAFPQATPASKFPPCASDYYQFDDLLTSEEQ 60
             M + SS  +   +K  +SSYF+LP +++SVAFPQATPAS FPPC SDYY F+DLLT EEQ
Sbjct:     1 MAVLSSADRASNEKKVKSSYFDLPPMEMSVAFPQATPASTFPPCTSDYYHFNDLLTPEEQ 60

Query:    61 AVRMKVRECMEKEIAPIMAEYWEKAEFPFHVIPKLGALRVAGGTIKGYGCPGHSVTGAAI 120
             A+R KVRECMEKE+APIM EYWEKAEFPFH+ PKLGA+ VAGG+IKGYGCPG S+T  AI
Sbjct:    61 AIRKKVRECMEKEVAPIMTEYWEKAEFPFHITPKLGAMGVAGGSIKGYGCPGLSITANAI 120

Query:   121 AIAEIARVDASCSTFILVHSSLAMLTIALCGSEEQKQKYLPSLAQLNTIACWALTEPAYG 180
             A AEIARVDASCSTFILVHSSL MLTIALCGSE QK+KYLPSLAQLNT+ACWALTEP  G
Sbjct:   121 ATAEIARVDASCSTFILVHSSLGMLTIALCGSEAQKEKYLPSLAQLNTVACWALTEPDNG 180

Query:   181 SDASALNTTATKVEGGWILEGQKRWIGNSTFADVLVIFARNTTTNQINGY 230
             SDAS L TTATKVEGGW + GQKRWIGNSTFAD+L+IFARNTTTNQING+
Sbjct:   181 SDASGLGTTATKVEGGWKINGQKRWIGNSTFADLLIIFARNTTTNQINGF 230

GO:0003995 "acyl-CoA dehydrogenase activity" evidence=IEA

GO:0005739 "mitochondrion" evidence=ISM

GO:0008152 "metabolic process" evidence=IEA

GO:0016491 "oxidoreductase activity" evidence=ISS

GO:0016627 "oxidoreductase activity, acting on the CH-CH group of donors" evidence=IEA

GO:0050660 "flavin adenine dinucleotide binding" evidence=IEA

GO:0055114 "oxidation-reduction process" evidence=IEA

GO:0003997 "acyl-CoA oxidase activity" evidence=IMP;IDA

GO:0005777 "peroxisome" evidence=IDA

GO:0006635 "fatty acid beta-oxidation" evidence=RCA;IMP;IDA

GO:0009793 "embryo development ending in seed dormancy" evidence=IGI

GO:0046459 "short-chain fatty acid metabolic process" evidence=TAS

GO:0005829 "cytosol" evidence=RCA

GO:0006623 "protein targeting to vacuole" evidence=RCA

GO:0007030 "Golgi organization" evidence=RCA

GO:0007033 "vacuole organization" evidence=RCA

GO:0016192 "vesicle-mediated transport" evidence=RCA

GO:0016558 "protein import into peroxisome matrix" evidence=RCA

GO:0044265 "cellular macromolecule catabolic process" evidence=RCA

DICTYBASE|DDB_G0274585 DDB_G0274585 "putative acyl-CoA oxidase" [Dictyostelium discoideum (taxid:44689)]

 Score = 416 (151.5 bits), Expect = 6.1e-39, P = 6.1e-39
 Identities = 85/194 (43%), Positives = 121/194 (62%)

Query:    40 KFPPCASDYYQFDDLLTSEEQAVRMKVRECMEKEIAPI-MAEYWEKAEFPFHVIPKLGAL 98
             K  P A+D++ FD LLT +E A+R K  +  ++EI  + + EY+E+AEFP  +I +L  L
Sbjct:    21 KAQPSATDFFDFDGLLTEKELAIRKKAEKFAKEEINSLNINEYYERAEFPLPIIERLKGL 80

Query:    99 RVAGGTIKGYGCPGHSVTGAAIAIAEIARVDASCSTFILVHSSLAMLTIALCGSEEQKQK 158
                G  IKGYG P  +     +   EI++  A  +TF  +  ++ ML I   GSE+QKQ 
Sbjct:    81 NWVGANIKGYGSPELTSMELGLIAMEISKSSADIATFYTILLNITMLAIYYSGSEQQKQY 140

Query:   159 YLPSLAQLNTIACWALTEPAYGSDASALNTTATKVEGG--WILEGQKRWIGNSTFADVLV 216
             YLP +  L  I  +ALTEP  GSDA+ L  TA ++  G  WIL G+KRWIGN+  AD++V
Sbjct:   141 YLPKMTSLEKIGAFALTEPEAGSDAAGLKCTAKQLPNGAGWILNGEKRWIGNAPMADIIV 200

Query:   217 IFARNTTTNQINGY 230
             I+ARN  TN+I+G+
Sbjct:   201 IWARNIDTNKIHGF 214

GO:0055114 "oxidation-reduction process" evidence=IEA

GO:0050660 "flavin adenine dinucleotide binding" evidence=IEA

GO:0016627 "oxidoreductase activity, acting on the CH-CH group of donors" evidence=IEA

GO:0008152 "metabolic process" evidence=IEA

GO:0003995 "acyl-CoA dehydrogenase activity" evidence=IEA

GO:0006635 "fatty acid beta-oxidation" evidence=ISS

GO:0005777 "peroxisome" evidence=ISS

GO:0003997 "acyl-CoA oxidase activity" evidence=ISS

GO:0016491 "oxidoreductase activity" evidence=IEA

WB|WBGene00010052 F54D5.7 [Caenorhabditis elegans (taxid:6239)]

 Score = 323 (118.8 bits), Expect = 4.4e-29, P = 4.4e-29
 Identities = 67/187 (35%), Positives = 108/187 (57%)

Query:    47 DYYQFDDLLTSEEQAVRMKVRECMEKEIAPIMAEYWEKAEFPFHVIPKLGALRVAGGTIK 106
             D +Q  D LT +E+++ +  RE  ++ + P + E +   +F   +IP++G++ + G   +
Sbjct:    24 DAFQLSDQLTEDERSLMLSAREYCQERLLPRVTEAYRTEKFDPSLIPEMGSMGLLGAPYQ 83

Query:   107 GYGCPGHSVTGAAIAIAEIARVDASCSTFILVHSSLAMLTIALCGSEEQKQKYLPSLAQL 166
             GYGC G S  G  +   E+ RVD+   + + V +SL +  I   GSE+QKQKY+P LA  
Sbjct:    84 GYGCAGTSTVGYGLIAREVERVDSGYRSTMSVQTSLVIGPIYNYGSEDQKQKYIPDLASG 143

Query:   167 NTIACWALTEPAYGSDASALNTTAT--KVEGGWILEGQKRWIGNSTFADVLVIFARNTT- 223
               I C+ LTEP +GS+   + T AT  +    + L G K WI NS  +DV+V++AR+   
Sbjct:   144 KKIGCFGLTEPNHGSNPGGMETKATWDETTKTYKLNGSKTWISNSPVSDVMVVWARSARH 203

Query:   224 TNQINGY 230
              N+I G+
Sbjct:   204 NNKIKGF 210

GO:0003995 "acyl-CoA dehydrogenase activity" evidence=IEA

GO:0055114 "oxidation-reduction process" evidence=IEA

GO:0016627 "oxidoreductase activity, acting on the CH-CH group of donors" evidence=IEA

GO:0016491 "oxidoreductase activity" evidence=IEA

UNIPROTKB|Q47V61 gcdH "Glutaryl-CoA dehydrogenase" [Colwellia psychrerythraea 34H (taxid:167879)]

 Score = 321 (118.1 bits), Expect = 7.1e-29, P = 7.1e-29
 Identities = 75/187 (40%), Positives = 106/187 (56%)

Query:    47 DYYQFDDLLTSEEQAVRMKVRECMEKEIAP--IMAEYWEKAEFPFHVIPKLGALRVAGGT 104
             D    +D L+ +E+ VR       ++E+ P  +MA   E  +F  +++ + G L + G T
Sbjct:    11 DILLLNDQLSEDERMVRDMAHTFCQEELMPGVLMANRNE--DFDPNIMRQFGELGLLGAT 68

Query:   105 IKGYGCPGHSVTGAAIAIAEIARVDASCSTFILVHSSLAMLTIALCGSEEQKQKYLPSLA 164
             I GYGC G +     +   E+ RVD+   + + V SSL M  I   G+ EQK+KYLP LA
Sbjct:    69 IDGYGCSGVNYVSYGLVAREVERVDSGYRSAMSVQSSLVMHPINAYGTTEQKEKYLPKLA 128

Query:   165 QLNTIACWALTEPAYGSDASALNTTATKVEGGWILEGQKRWIGNSTFADVLVIFARNTTT 224
                 I C+ LTEP  GSD S++ T A KV+GG+ L G K WI NS  ADV V++A+N   
Sbjct:   129 TGEYIGCFGLTEPGSGSDPSSMITRAKKVDGGYRLTGSKMWITNSPIADVFVVWAKNEAE 188

Query:   225 -NQINGY 230
              NQI G+
Sbjct:   189 GNQICGF 195

GO:0004361 "glutaryl-CoA dehydrogenase activity" evidence=ISS

GO:0006520 "cellular amino acid metabolic process" evidence=ISS

TIGR_CMR|CPS_4667 CPS_4667 "glutaryl-CoA dehydrogenase" [Colwellia psychrerythraea 34H (taxid:167879)]

 Score = 321 (118.1 bits), Expect = 7.1e-29, P = 7.1e-29
 Identities = 75/187 (40%), Positives = 106/187 (56%)

Query:    47 DYYQFDDLLTSEEQAVRMKVRECMEKEIAP--IMAEYWEKAEFPFHVIPKLGALRVAGGT 104
             D    +D L+ +E+ VR       ++E+ P  +MA   E  +F  +++ + G L + G T
Sbjct:    11 DILLLNDQLSEDERMVRDMAHTFCQEELMPGVLMANRNE--DFDPNIMRQFGELGLLGAT 68

Query:   105 IKGYGCPGHSVTGAAIAIAEIARVDASCSTFILVHSSLAMLTIALCGSEEQKQKYLPSLA 164
             I GYGC G +     +   E+ RVD+   + + V SSL M  I   G+ EQK+KYLP LA
Sbjct:    69 IDGYGCSGVNYVSYGLVAREVERVDSGYRSAMSVQSSLVMHPINAYGTTEQKEKYLPKLA 128

Query:   165 QLNTIACWALTEPAYGSDASALNTTATKVEGGWILEGQKRWIGNSTFADVLVIFARNTTT 224
                 I C+ LTEP  GSD S++ T A KV+GG+ L G K WI NS  ADV V++A+N   
Sbjct:   129 TGEYIGCFGLTEPGSGSDPSSMITRAKKVDGGYRLTGSKMWITNSPIADVFVVWAKNEAE 188

Query:   225 -NQINGY 230
              NQI G+
Sbjct:   189 GNQICGF 195

GO:0004361 "glutaryl-CoA dehydrogenase activity" evidence=ISS

GO:0006520 "cellular amino acid metabolic process" evidence=ISS

ZFIN|ZDB-GENE-041010-117 gcdhl "glutaryl-Coenzyme A dehydrogenase, like" [Danio rerio (taxid:7955)]

 Score = 295 (108.9 bits), Expect = 4.0e-26, P = 4.0e-26
 Identities = 73/189 (38%), Positives = 101/189 (53%)

Query:    47 DYYQFDDLLTSEEQAVRMKVRE-CMEKEIAPIMAEYWEKAEFPFH--VIPKLGALRVAGG 103
             D    + LLT EE  +R   R  C EK +  I+     + E  FH  ++ ++G L V G 
Sbjct:    54 DALDLEGLLTEEEIMIRDSFRTYCQEKLMPRILMA--NRNEI-FHREIVSEMGELGVLGP 110

Query:   104 TIKGYGCPGHSVTGAAIAIAEIARVDASCSTFILVHSSLAMLTIALCGSEEQKQKYLPSL 163
             TIKGYGC G S     +   E+ RVD+   + + V SSL M  I   G+EEQKQKYLP L
Sbjct:   111 TIKGYGCAGTSYVAYGLIAREVERVDSGYRSVMSVQSSLVMHPINAYGTEEQKQKYLPRL 170

Query:   164 AQLNTIACWALTEPAYGSDASALNTTATKVEGG--WILEGQKRWIGNSTFADVLVIFARN 221
             AQ   + C+ LTEP +GSD  ++ T A        + L G K WI NS  AD+ V++A+ 
Sbjct:   171 AQGEILGCFGLTEPNHGSDPGSMETKAKYNSSSHTFTLTGSKTWITNSPVADICVVWAK- 229

Query:   222 TTTNQINGY 230
                 ++ G+
Sbjct:   230 CEDGKVRGF 238

GO:0016627 "oxidoreductase activity, acting on the CH-CH group of donors" evidence=IEA

GO:0003995 "acyl-CoA dehydrogenase activity" evidence=IEA

GO:0055114 "oxidation-reduction process" evidence=IEA

GO:0008152 "metabolic process" evidence=IEA

GO:0050660 "flavin adenine dinucleotide binding" evidence=IEA

GO:0016491 "oxidoreductase activity" evidence=IEA

ASPGD|ASPL0000037782 AN2762 [Emericella nidulans (taxid:162425)]

 Score = 293 (108.2 bits), Expect = 6.6e-26, P = 6.6e-26
 Identities = 71/226 (31%), Positives = 121/226 (53%)

Query:    24 PALDISVAFPQATPASKFPPCASDY---YQFDD-LLTSE-----EQAVRMKVRECMEKEI 74
             P+     A   A   SK P  +  Y   ++++D LL SE     E A++   R+  ++ +
Sbjct:     3 PSSFFRTASRSAGRLSKIPAASRGYATAFKWEDPLLASELYTEDELAIQETARQYCQERL 62

Query:    75 APIMAEYWEKAEFPFHVIPKLGALRVAGGTIKGYGCPGHSVTGAAIAIAEIARVDASCST 134
              P + + +    +   ++ ++G L + G +I+GYGC G S   + +   E+ RVD+   +
Sbjct:    63 QPRVLDAYRNENYDRKILEEMGELGLLGASIEGYGCAGVSTVASGLITKEVERVDSGYRS 122

Query:   135 FILVHSSLAMLTIALCGSEEQKQKYLPSLAQLNTIACWALTEPAYGSDASALNTTA---- 190
              + V SSLAM  I   G++E K + LP LA+     C+ LTEP +GSD  ++ T A    
Sbjct:   123 GMSVQSSLAMTAIHEFGTQELKDRLLPELAKGKLAGCFGLTEPNHGSDPGSMETIAREHP 182

Query:   191 TKVEGGWILEGQKRWIGNSTFADVLVIFARNTTTNQINGYANQSIK 236
             TK +G ++L G K WI NS  +D+L+++A+  +T +I G+  +  K
Sbjct:   183 TK-KGVYLLSGSKTWITNSPISDILIVWAKLQSTGKIRGFVVERSK 227

GO:0050660 "flavin adenine dinucleotide binding" evidence=IEA

GO:0055114 "oxidation-reduction process" evidence=IEA

GO:0003995 "acyl-CoA dehydrogenase activity" evidence=IEA

GO:0005575 "cellular_component" evidence=ND

UNIPROTKB|Q4KKG4 gcdH "Glutaryl-CoA dehydrogenase" [Pseudomonas protegens Pf-5 (taxid:220664)]

 Score = 292 (107.8 bits), Expect = 8.4e-26, P = 8.4e-26
 Identities = 68/180 (37%), Positives = 100/180 (55%)

Query:    52 DDLLTSEEQAVRMKVRECMEKEIAPIMAEYWEKAEFPFHVIPKLGALRVAGGTI-KGYGC 110
             D  LT EE+ VR    +  + ++AP + E +   +    +  ++G + + G TI + YG 
Sbjct:    16 DQQLTEEERMVRDSAEQFAQDKLAPRVLEAFRHEKTDPAIFREMGEVGLLGATIPEQYGG 75

Query:   111 PGHSVTGAAIAIAEIARVDASCSTFILVHSSLAMLTIALCGSEEQKQKYLPSLAQLNTIA 170
              G +     +   E+ RVD+   + + V SSL M+ I   G+E QKQKYLP LA    I 
Sbjct:    76 SGLNYVCYGLIAREVERVDSGYRSMMSVQSSLVMVPINEFGTEAQKQKYLPKLASGEWIG 135

Query:   171 CWALTEPAYGSDASALNTTATKVEGGWILEGQKRWIGNSTFADVLVIFARNTTTNQINGY 230
             C+ LTEP +GSD  A+ T A KV+GG+ L G K WI NS  ADV V++A++     I G+
Sbjct:   136 CFGLTEPNHGSDPGAMITRARKVDGGYSLTGSKMWITNSPIADVFVVWAKDDA-GDIRGF 194

GO:0004361 "glutaryl-CoA dehydrogenase activity" evidence=ISS

GO:0009063 "cellular amino acid catabolic process" evidence=ISS

FB|FBgn0031824 CG9547 [Drosophila melanogaster (taxid:7227)]

 Score = 289 (106.8 bits), Expect = 1.8e-25, P = 1.8e-25
 Identities = 69/186 (37%), Positives = 102/186 (54%)

Query:    47 DYYQFDDLLTSEEQAVRMKVRECMEKEIAPIMAEYWEKAEFPFHVIPKLGALRVAGGTIK 106
             D    +  LT EE A+R   R   + E+ P +        F   ++ ++G+L V G TIK
Sbjct:    33 DPLNLESQLTEEEVAIRDAFRGYCQAELQPRVKMANRLETFDKKIMEEIGSLGVLGCTIK 92

Query:   107 GYGCPGHSVTGAAIAIAEIARVDASCSTFILVHSSLAMLTIALCGSEEQKQKYLPSLAQL 166
             GYGC G S     +   E+ RVD++  + + V SSLAM  I   GSEEQKQ+YLPS+A+ 
Sbjct:    93 GYGCAGVSSVAYGLLTREVERVDSAYRSAVSVQSSLAMGAIYDFGSEEQKQRYLPSMAEG 152

Query:   167 NTIACWALTEPAYGSDASALNTTAT--KVEGGWILEGQKRWIGNSTFADVLVIFARNTTT 224
               I  + LTEP +GSD + + T A        +IL G K WI ++  ADV+V++A+    
Sbjct:   153 KLIGAFGLTEPNHGSDPAGMETRAKYDSKSKTYILNGSKTWITSAPIADVIVVWAK-CED 211

Query:   225 NQINGY 230
              ++ G+
Sbjct:   212 GKVRGF 217

GO:0004361 "glutaryl-CoA dehydrogenase activity" evidence=ISS

GO:0005759 "mitochondrial matrix" evidence=ISS

GO:0006568 "tryptophan metabolic process" evidence=ISS

GO:0006554 "lysine catabolic process" evidence=ISS

GO:0046948 "hydroxylysine catabolic process" evidence=ISS

GO:0050660 "flavin adenine dinucleotide binding" evidence=IEA

GO:0055114 "oxidation-reduction process" evidence=IEA

GO:0005875 "microtubule associated complex" evidence=IDA

UNIPROTKB|P95208 fadE7 "Glutaryl-CoA dehydrogenase" [Mycobacterium tuberculosis H37Rv (taxid:83332)]

 Score = 289 (106.8 bits), Expect = 1.8e-25, P = 1.8e-25
 Identities = 66/193 (34%), Positives = 103/193 (53%)

Query:    42 PPCAS--DYYQFDDLLTSEEQAVRMKVRECMEKEIAPIMAEYWEKAEFPF--HVIPKLGA 97
             PP     D    D  L+S+E AVR  VR    + + P +A ++E  + P    +  + G 
Sbjct:     6 PPALDRDDPLGLDASLSSDEIAVRDTVRRFCAEHVTPHVAAWFEDGDLPVARDLAKQFGE 65

Query:    98 LRVAGGTIKGYGCPGHSVTGAAIAIAEIARVDASCSTFILVHSSLAMLTIALCGSEEQKQ 157
             L + G  + G+GC G S     +A  E+   D+   + + V  SLAM  IA  GS+EQK+
Sbjct:    66 LGLLGMQLHGHGCGGASAVHYGLACRELEAADSGIRSLVSVQGSLAMFAIASFGSDEQKR 125

Query:   158 KYLPSLAQLNTIACWALTEPAYGSDASALNTTATKVEGGWILEGQKRWIGNSTFADVLVI 217
             ++LP +A  + + C+ LTEP  GSD +A+ T A +    W++ G K WI N + ADV ++
Sbjct:   126 QWLPGMATGDLLGCFGLTEPDVGSDPAAMKTRARRDGPDWVITGGKMWITNGSVADVAIV 185

Query:   218 FARNTTTNQINGY 230
             +A   T + I G+
Sbjct:   186 WA--ATDDGIRGF 196

GO:0040007 "growth" evidence=IMP

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q96329	ACOX4_ARATH	1, ., 3, ., 3, ., 6	0.7782	0.9583	0.5275	yes	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input:
	estExt_Genewise1_v1.C_LG_XVI3692	acyl-CoA oxidase (EC-1.3.3.6) (437 aa)
		(Populus trichocarpa)
Predicted Functional Partners:
	estExt_fgenesh4_pg.C_LG_II1951	acetyl-CoA C-acyltransferase (EC-2.3.1.16) (457 aa)	•					•	•		0.925
	fgenesh4_pm.C_LG_I000162	SubName- Full=Putative uncharacterized protein; (460 aa)	•					•	•		0.925
	estExt_Genewise1_v1.C_LG_XIV3807	acetyl-CoA C-acetyltransferase (EC-2.3.1.9) (402 aa)	•					•	•		0.918
	grail3.0024004101	acetyl-CoA C-acetyltransferase (EC-2.3.1.9) (412 aa)	•					•	•		0.917
	estExt_Genewise1_v1.C_LG_X3923	hypothetical protein (726 aa)						•	•		0.908
	estExt_fgenesh4_pg.C_LG_XVIII0682	SubName- Full=Putative uncharacterized protein; (727 aa)						•	•		0.907
	estExt_fgenesh4_pg.C_LG_VIII0916	enoyl-CoA hydratase (EC-4.2.1.17) (265 aa)						•			0.903
	grail3.0006050201	enoyl-CoA hydratase (EC-4.2.1.17) (265 aa)						•			0.903
	gw1.X.5990.1	long-chain acyl-CoA synthetase (EC-6.2.1.3) (705 aa)						•			0.899
	gw1.II.706.1	long-chain-fatty-acid-CoA ligase (EC-6.2.1.3) (652 aa)						•			0.899

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	240
PLN02526	412	PLN02526, PLN02526, acyl-coenzyme A oxidase	1e-155
cd01151	386	cd01151, GCD, Glutaryl-CoA dehydrogenase	3e-97
cd01158	373	cd01158, SCAD_SBCAD, Short chain acyl-CoA dehydrog	6e-47
COG1960	393	COG1960, CaiA, Acyl-CoA dehydrogenases [Lipid meta	3e-38
pfam02771	113	pfam02771, Acyl-CoA_dh_N, Acyl-CoA dehydrogenase,	2e-34
cd01156	376	cd01156, IVD, Isovaleryl-CoA dehydrogenase	4e-31
cd00567	327	cd00567, ACAD, Acyl-CoA dehydrogenase	1e-27
cd01161	409	cd01161, VLCAD, Very long chain acyl-CoA dehydroge	8e-27
cd01160	372	cd01160, LCAD, Long chain acyl-CoA dehydrogenase	1e-26
cd01162	375	cd01162, IBD, Isobutyryl-CoA dehydrogenase	8e-26
cd01157	378	cd01157, MCAD, Medium chain acyl-CoA dehydrogenase	3e-19
PLN02519	404	PLN02519, PLN02519, isovaleryl-CoA dehydrogenase	5e-18
pfam02770	52	pfam02770, Acyl-CoA_dh_M, Acyl-CoA dehydrogenase,	3e-17
PTZ00461	410	PTZ00461, PTZ00461, isovaleryl-CoA dehydrogenase;	3e-16
cd01152	380	cd01152, ACAD_fadE6_17_26, Putative acyl-CoA dehyd	6e-15
PRK12341	381	PRK12341, PRK12341, putative acyl-CoA dehydrogenas	1e-11
TIGR03204	395	TIGR03204, pimC_large, pimeloyl-CoA dehydrogenase,	2e-11
cd01153	407	cd01153, ACAD_fadE5, Putative acyl-CoA dehydrogena	4e-10
PRK03354	380	PRK03354, PRK03354, crotonobetainyl-CoA dehydrogen	2e-09
PRK09463	777	PRK09463, fadE, acyl-CoA dehydrogenase; Reviewed	4e-09
cd01150	610	cd01150, AXO, Peroxisomal acyl-CoA oxidase	5e-09
TIGR03207	372	TIGR03207, cyc_hxne_CoA_dh, cyclohexanecarboxyl-Co	5e-09
PRK13026	774	PRK13026, PRK13026, acyl-CoA dehydrogenase; Review	3e-08
cd01155	394	cd01155, ACAD_FadE2, Acyl-CoA dehydrogenases simil	2e-07
PTZ00456	622	PTZ00456, PTZ00456, acyl-CoA dehydrogenase; Provis	2e-06
PLN02443	664	PLN02443, PLN02443, acyl-coenzyme A oxidase	5e-06
PTZ00460	646	PTZ00460, PTZ00460, acyl-CoA dehydrogenase; Provis	1e-05
PLN02636	686	PLN02636, PLN02636, acyl-coenzyme A oxidase	2e-05
TIGR03203	378	TIGR03203, pimD_small, pimeloyl-CoA dehydrogenase,	3e-05
cd01154	418	cd01154, AidB, Proteins involved in DNA damage res	3e-04
PTZ00457	520	PTZ00457, PTZ00457, acyl-CoA dehydrogenase; Provis	5e-04

>gnl|CDD|178141 PLN02526, PLN02526, acyl-coenzyme A oxidase

 Score =  435 bits (1121), Expect = e-155
 Identities = 177/204 (86%), Positives = 191/204 (93%)

Query: 27  DISVAFPQATPASKFPPCASDYYQFDDLLTSEEQAVRMKVRECMEKEIAPIMAEYWEKAE 86
           D+SVAFPQATPAS FPP  SDYYQFDDLLT EEQA+R +VRECMEKE+APIM EYWEKAE
Sbjct: 1   DVSVAFPQATPASIFPPSVSDYYQFDDLLTPEEQALRKRVRECMEKEVAPIMTEYWEKAE 60

Query: 87  FPFHVIPKLGALRVAGGTIKGYGCPGHSVTGAAIAIAEIARVDASCSTFILVHSSLAMLT 146
           FPFH+IPKLG+L +AGGTIKGYGCPG S+T +AIA AE+ARVDASCSTFILVHSSLAMLT
Sbjct: 61  FPFHIIPKLGSLGIAGGTIKGYGCPGLSITASAIATAEVARVDASCSTFILVHSSLAMLT 120

Query: 147 IALCGSEEQKQKYLPSLAQLNTIACWALTEPAYGSDASALNTTATKVEGGWILEGQKRWI 206
           IALCGSE QKQKYLPSLAQL+T+ACWALTEP YGSDAS+LNTTATKVEGGWIL GQKRWI
Sbjct: 121 IALCGSEAQKQKYLPSLAQLDTVACWALTEPDYGSDASSLNTTATKVEGGWILNGQKRWI 180

Query: 207 GNSTFADVLVIFARNTTTNQINGY 230
           GNSTFADVLVIFARNTTTNQING+
Sbjct: 181 GNSTFADVLVIFARNTTTNQINGF 204

Length = 412

>gnl|CDD|173840 cd01151, GCD, Glutaryl-CoA dehydrogenase

 Score =  288 bits (740), Expect = 3e-97
 Identities = 86/188 (45%), Positives = 112/188 (59%)

Query: 43  PCASDYYQFDDLLTSEEQAVRMKVRECMEKEIAPIMAEYWEKAEFPFHVIPKLGALRVAG 102
               D    DDLLT EE+A+R   RE  ++E+AP + E + + +F   +I ++G L + G
Sbjct: 1   FNWEDPLNLDDLLTEEERAIRDTAREFCQEELAPRVLEAYREEKFDRKIIEEMGELGLLG 60

Query: 103 GTIKGYGCPGHSVTGAAIAIAEIARVDASCSTFILVHSSLAMLTIALCGSEEQKQKYLPS 162
            TIKGYGC G S     +   E+ RVD+   +F+ V SSL ML I   GSEEQKQKYLP 
Sbjct: 61  ATIKGYGCAGLSSVAYGLIAREVERVDSGYRSFMSVQSSLVMLPIYDFGSEEQKQKYLPK 120

Query: 163 LAQLNTIACWALTEPAYGSDASALNTTATKVEGGWILEGQKRWIGNSTFADVLVIFARNT 222
           LA    I C+ LTEP +GSD   + T A K  GG+ L G K WI NS  ADV V++ARN 
Sbjct: 121 LASGELIGCFGLTEPNHGSDPGGMETRARKDGGGYKLNGSKTWITNSPIADVFVVWARND 180

Query: 223 TTNQINGY 230
            T +I G+
Sbjct: 181 ETGKIRGF 188

Glutaryl-CoA dehydrogenase (GCD). GCD is an acyl-CoA dehydrogenase, which catalyzes the oxidative decarboxylation of glutaryl-CoA to crotonyl-CoA and carbon dioxide in the catabolism of lysine, hydroxylysine, and tryptophan. It uses electron transfer flavoprotein (ETF) as an electron acceptor. GCD is a homotetramer. GCD deficiency leads to a severe neurological disorder in humans. Length = 386

>gnl|CDD|173847 cd01158, SCAD_SBCAD, Short chain acyl-CoA dehydrogenases and eukaryotic short/branched chain acyl-CoA dehydrogenases

 Score =  158 bits (403), Expect = 6e-47
 Identities = 77/165 (46%), Positives = 98/165 (59%), Gaps = 1/165 (0%)

Query: 57  SEEQAVRMKVRECMEKEIAPIMAEYWEKAEFPFHVIPKLGALRVAGGTI-KGYGCPGHSV 115
            E Q +R  VR+  EKEIAP+ AE  EK EFP  VI ++  L + G  I + YG  G   
Sbjct: 1   EEHQMIRKTVRDFAEKEIAPLAAEMDEKGEFPREVIKEMAELGLMGIPIPEEYGGAGLDF 60

Query: 116 TGAAIAIAEIARVDASCSTFILVHSSLAMLTIALCGSEEQKQKYLPSLAQLNTIACWALT 175
              AIAI E+A+VDAS +  + VH+SL    I   G+EEQK+KYLP LA    I  +AL+
Sbjct: 61  LAYAIAIEELAKVDASVAVIVSVHNSLGANPIIKFGTEEQKKKYLPPLATGEKIGAFALS 120

Query: 176 EPAYGSDASALNTTATKVEGGWILEGQKRWIGNSTFADVLVIFAR 220
           EP  GSDA+AL TTA K    ++L G K WI N   AD  ++FA 
Sbjct: 121 EPGAGSDAAALKTTAKKDGDDYVLNGSKMWITNGGEADFYIVFAV 165

Short chain acyl-CoA dehydrogenase (SCAD). SCAD is a mitochondrial beta-oxidation enzyme. It catalyzes the alpha,beta dehydrogenation of the corresponding trans-enoyl-CoA by FAD, which becomes reduced. The reduced form of SCAD is reoxidized in the oxidative half-reaction by electron-transferring flavoprotein (ETF), from which the electrons are transferred to the mitochondrial respiratory chain coupled with ATP synthesis. This subgroup also contains the eukaryotic short/branched chain acyl-CoA dehydrogenase(SBCAD), the bacterial butyryl-CoA dehydorgenase(BCAD) and 2-methylbutyryl-CoA dehydrogenase, which is involved in isoleucine catabolism. These enzymes are homotetramers. Length = 373

>gnl|CDD|224871 COG1960, CaiA, Acyl-CoA dehydrogenases [Lipid metabolism]

 Score =  136 bits (345), Expect = 3e-38
 Identities = 72/177 (40%), Positives = 99/177 (55%), Gaps = 8/177 (4%)

Query: 52  DDLLTSEEQAVRMKVRECMEKEIAPIMAEYWEKA---EFPFHVIPKLGALRVAGGTI-KG 107
           D  L+ E++A+R +VRE  E+E+AP  AE   +     FP  ++  L    + G TI + 
Sbjct: 2   DFDLSEEQEALRAEVREFAEEELAPEAAEIDRRIEDERFPRELLRALAEAGLLGLTIPEE 61

Query: 108 YGCPGHSVTGAAIAIAEIARVDAS-CSTFILVHSSLAML--TIALCGSEEQKQKYLPSLA 164
           YG  G S    A  + E+AR DA       L H  L  L  TI   G+EEQK++YLP LA
Sbjct: 62  YGGLGLSPLEQAAVLEELARADAGGALALGLTHGGLGALAPTILRFGTEEQKRRYLPRLA 121

Query: 165 QLNTIACWALTEPAYGSDASALNTT-ATKVEGGWILEGQKRWIGNSTFADVLVIFAR 220
               I  +ALTEP  GSD ++L TT A + +G ++L GQK WI N+  AD L++ AR
Sbjct: 122 SGELIGAFALTEPGAGSDLASLRTTAAVRDDGDYVLNGQKIWISNAPVADWLLVLAR 178

Length = 393

>gnl|CDD|217220 pfam02771, Acyl-CoA_dh_N, Acyl-CoA dehydrogenase, N-terminal domain

 Score =  119 bits (300), Expect = 2e-34
 Identities = 51/110 (46%), Positives = 66/110 (60%), Gaps = 1/110 (0%)

Query: 56  TSEEQAVRMKVRECMEKEIAPIMAEYWEKAEFPFHVIPKLGALRVAGGTI-KGYGCPGHS 114
           T E++A+R  VRE  E+E+AP  AE+ E+ EFP  +  KLG L + G TI + YG  G  
Sbjct: 1   TEEQEALRDTVREFAEEEVAPHAAEWDEEGEFPRELWRKLGELGLLGLTIPEEYGGAGLD 60

Query: 115 VTGAAIAIAEIARVDASCSTFILVHSSLAMLTIALCGSEEQKQKYLPSLA 164
               A+   E+AR DAS    + VHSSL    I   G+EEQK+KYLP LA
Sbjct: 61  YLEYALVAEELARADASVGLALSVHSSLVAPPILRFGTEEQKEKYLPKLA 110

The N-terminal domain of Acyl-CoA dehydrogenase is an all-alpha domain. Length = 113

>gnl|CDD|173845 cd01156, IVD, Isovaleryl-CoA dehydrogenase

 Score =  117 bits (295), Expect = 4e-31
 Identities = 62/177 (35%), Positives = 88/177 (49%), Gaps = 1/177 (0%)

Query: 55  LTSEEQAVRMKVRECMEKEIAPIMAEYWEKAEFPFHVIPKLGALRVAGGTI-KGYGCPGH 113
           L  E + +R  VRE  +KEIAP+ A+     EFP  +  K+G L + G T  + YG  G 
Sbjct: 2   LDDEIEMLRQSVREFAQKEIAPLAAKIDRDNEFPRDLWRKMGKLGLLGITAPEEYGGSGM 61

Query: 114 SVTGAAIAIAEIARVDASCSTFILVHSSLAMLTIALCGSEEQKQKYLPSLAQLNTIACWA 173
                 I + EI+R   S +     HS+L +  I   GS  QK+KYLP L     I   A
Sbjct: 62  GYLAHVIIMEEISRASGSVALSYGAHSNLCINQIYRNGSAAQKEKYLPKLISGEHIGALA 121

Query: 174 LTEPAYGSDASALNTTATKVEGGWILEGQKRWIGNSTFADVLVIFARNTTTNQINGY 230
           ++EP  GSD  ++   A K    ++L G K WI N   AD LV++A+   +   +G 
Sbjct: 122 MSEPNAGSDVVSMKLRAEKKGDRYVLNGSKMWITNGPDADTLVVYAKTDPSAGAHGI 178

Isovaleryl-CoA dehydrogenase (IVD) is an is an acyl-CoA dehydrogenase, which catalyzes the third step in leucine catabolism, the conversion of isovaleryl-CoA (3-methylbutyryl-CoA) into 3-methylcrotonyl-CoA. IVD is a homotetramer and has the greatest affinity for small branched chain substrates. Length = 376

>gnl|CDD|173838 cd00567, ACAD, Acyl-CoA dehydrogenase

 Score =  107 bits (269), Expect = 1e-27
 Identities = 48/163 (29%), Positives = 71/163 (43%), Gaps = 43/163 (26%)

Query: 58  EEQAVRMKVRECMEKEIAPIMAEYWEKAEFPFHVIPKLGALRVAGGTIKGYGCPGHSVTG 117
           E++ +R   RE   +E+ P   E  E  E P+ ++ +LG L                   
Sbjct: 2   EQRELRDSAREFAAEELEPYARERRETPEEPWELLAELGLL------------------- 42

Query: 118 AAIAIAEIARVDASCSTFILVHSSLAMLTIALCGSEEQKQKYLPSLAQLNTIACWALTEP 177
                                   L    +   G+EEQK++YLP LA    IA +ALTEP
Sbjct: 43  ------------------------LGAALLLAYGTEEQKERYLPPLASGEAIAAFALTEP 78

Query: 178 AYGSDASALNTTATKVEGGWILEGQKRWIGNSTFADVLVIFAR 220
             GSD + + TTA K   G++L G+K +I N   AD+ ++ AR
Sbjct: 79  GAGSDLAGIRTTARKDGDGYVLNGRKIFISNGGDADLFIVLAR 121

Both mitochondrial acyl-CoA dehydrogenases (ACAD) and peroxisomal acyl-CoA oxidases (AXO) catalyze the alpha,beta dehydrogenation of the corresponding trans-enoyl-CoA by FAD, which becomes reduced. The reduced form of ACAD is reoxidized in the oxidative half-reaction by electron-transferring flavoprotein (ETF), from which the electrons are transferred to the mitochondrial respiratory chain coupled with ATP synthesis. In contrast, AXO catalyzes a different oxidative half-reaction, in which the reduced FAD is reoxidized by molecular oxygen. The ACAD family includes the eukaryotic beta-oxidation enzymes, short (SCAD), medium (MCAD), long (LCAD) and very-long (VLCAD) chain acyl-CoA dehydrogenases. These enzymes all share high sequence similarity, but differ in their substrate specificities. The ACAD family also includes amino acid catabolism enzymes such as Isovaleryl-CoA dehydrogenase (IVD), short/branched chain acyl-CoA dehydrogenases(SBCAD), Isobutyryl-CoA dehydrogenase (IBDH), glutaryl-CoA deydrogenase (GCD) and Crotonobetainyl-CoA dehydrogenase. The mitochondrial ACAD's are generally homotetramers, except for VLCAD, which is a homodimer. Related enzymes include the SOS adaptive reponse proten aidB, Naphthocyclinone hydroxylase (NcnH), and and Dibenzothiophene (DBT) desulfurization enzyme C (DszC). Length = 327

>gnl|CDD|173850 cd01161, VLCAD, Very long chain acyl-CoA dehydrogenase

 Score =  106 bits (266), Expect = 8e-27
 Identities = 64/184 (34%), Positives = 89/184 (48%), Gaps = 7/184 (3%)

Query: 55  LTSEEQAVRMKVRECMEKEIAPIMAEYWEKAEFPFHVIPKLGALRVAGGTI-KGYGCPGH 113
            T E   +   V +  E+   P   +  EK   P   + +L  L + G  + + YG  G 
Sbjct: 27  QTEELNMLVGPVEKFFEEVNDPAKNDQLEK--IPRKTLTQLKELGLFGLQVPEEYGGLGL 84

Query: 114 SVTGAAIAIAEIARVDASCSTFILVHSSLAMLTIALCGSEEQKQKYLPSLAQLNTIACWA 173
           + T  A  +AEI  +D   S  +  H S+    I L G+E QK+KYLP LA    IA +A
Sbjct: 85  NNTQYAR-LAEIVGMDLGFSVTLGAHQSIGFKGILLFGTEAQKEKYLPKLASGEWIAAFA 143

Query: 174 LTEPAYGSDASALNTTATKVEGG--WILEGQKRWIGNSTFADVLVIFARNTTTNQINGYA 231
           LTEP+ GSDA+++ TTA   E G  ++L G K WI N   AD+  +FA  T      G  
Sbjct: 144 LTEPSSGSDAASIRTTAVLSEDGKHYVLNGSKIWITNGGIADIFTVFA-KTEVKDATGSV 202

Query: 232 NQSI 235
              I
Sbjct: 203 KDKI 206

VLCAD is an acyl-CoA dehydrogenase (ACAD), which is found in the mitochondria of eukaryotes and in some bacteria. It catalyzes the alpha,beta dehydrogenation of the corresponding trans-enoyl-CoA by FAD, which becomes reduced. The reduced form of ACAD is reoxidized in the oxidative half-reaction by electron-transferring flavoprotein (ETF), from which the electrons are transferred to the mitochondrial respiratory chain coupled with ATP synthesis. VLCAD acts as a homodimer. Length = 409

>gnl|CDD|173849 cd01160, LCAD, Long chain acyl-CoA dehydrogenase

 Score =  105 bits (263), Expect = 1e-26
 Identities = 65/183 (35%), Positives = 87/183 (47%), Gaps = 6/183 (3%)

Query: 58  EEQAVRMKVRECMEKEIAPIMAEYWEKA-EFPFHVIPKLGALRVAG-GTIKGYGCPGHSV 115
           E  A R  VR    KE+AP   E WEKA E P  V  K G   + G G  + YG  G  +
Sbjct: 2   EHDAFRDVVRRFFAKEVAPFHHE-WEKAGEVPREVWRKAGEQGLLGVGFPEEYGGIGGDL 60

Query: 116 TGAAIAIAEIARVDASCSTFILVHSSLAMLTIALCGSEEQKQKYLPSLAQLNTIACWALT 175
             AA+   E+AR   S      +H+ +    I   GS EQK++ LP +     I   A+T
Sbjct: 61  LSAAVLWEELARAGGSGPGL-SLHTDIVSPYITRAGSPEQKERVLPQMVAGKKIGAIAMT 119

Query: 176 EPAYGSDASALNTTATKVEGGWILEGQKRWIGNSTFADVLVIFARNTTTNQINGYANQSI 235
           EP  GSD   + TTA K    ++L G K +I N   ADV+++ AR  T  +  G    S+
Sbjct: 120 EPGAGSDLQGIRTTARKDGDHYVLNGSKTFITNGMLADVVIVVAR--TGGEARGAGGISL 177

Query: 236 KFV 238
             V
Sbjct: 178 FLV 180

LCAD is an acyl-CoA dehydrogenases (ACAD), which is found in the mitochondria of eukaryotes and in some prokaryotes. It catalyzes the alpha, beta dehydrogenation of the corresponding trans-enoyl-CoA by FAD, which becomes reduced. The reduced form of LCAD is reoxidized in the oxidative half-reaction by electron-transferring flavoprotein (ETF), from which the electrons are transferred to the mitochondrial respiratory chain coupled with ATP synthesis. LCAD acts as a homodimer. Length = 372

>gnl|CDD|173851 cd01162, IBD, Isobutyryl-CoA dehydrogenase

 Score =  103 bits (258), Expect = 8e-26
 Identities = 55/167 (32%), Positives = 90/167 (53%), Gaps = 2/167 (1%)

Query: 55  LTSEEQAVRMKVRECMEKEIAPIMAEYWEKAEFPFHVIPKLGALRVAGGTIKG-YGCPGH 113
           L  E++A++   R    KE+AP  A++ +K  FP  V+ K   L   G  I+   G  G 
Sbjct: 1   LNEEQRAIQEVARAFAAKEMAPHAADWDQKKHFPVDVLRKAAELGFGGIYIRDDVGGSGL 60

Query: 114 SVTGAAIAIAEIARVDASCSTFILVHSSLAMLTIALCGSEEQKQKYLPSLAQLNTIACWA 173
           S   A+I    ++    S + +I +H+  A + I   G++EQ++++LP L  +  +A + 
Sbjct: 61  SRLDASIIFEALSTGCVSTAAYISIHNMCAWM-IDSFGNDEQRERFLPDLCTMEKLASYC 119

Query: 174 LTEPAYGSDASALNTTATKVEGGWILEGQKRWIGNSTFADVLVIFAR 220
           LTEP  GSDA+AL T A +    ++L G K +I  +  +DV V+ AR
Sbjct: 120 LTEPGSGSDAAALRTRAVREGDHYVLNGSKAFISGAGDSDVYVVMAR 166

Isobutyryl-CoA dehydrogenase (IBD) catalyzes the alpha, beta- dehydrogenation of short branched chain acyl-CoA intermediates in valine catabolism. It is predicted to be a homotetramer. Length = 375

>gnl|CDD|173846 cd01157, MCAD, Medium chain acyl-CoA dehydrogenase

 Score = 84.9 bits (210), Expect = 3e-19
 Identities = 48/167 (28%), Positives = 82/167 (49%), Gaps = 2/167 (1%)

Query: 55  LTSEEQAVRMKVRECMEKEIAPIMAEYWEKAEFPFHVIPKLGALRVAGGTI-KGYGCPGH 113
           LT +++  +   R+   +EI P+ AEY +  E+P+ +I +   L +    I +  G  G 
Sbjct: 1   LTEQQKEFQETARKFAREEIIPVAAEYDKSGEYPWPLIKRAWELGLMNTHIPEDCGGLGL 60

Query: 114 SVTGAAIAIAEIARVDASCSTFILVHSSLAMLTIALCGSEEQKQKYLPSLAQLNTIACWA 173
                 +   E+A       T I   +SL  + + + G++EQK+KYL  + +   +  + 
Sbjct: 61  GTFDTCLITEELAYGCTGVQTAIEA-NSLGQMPVIISGNDEQKKKYLGRMTEEPLMCAYC 119

Query: 174 LTEPAYGSDASALNTTATKVEGGWILEGQKRWIGNSTFADVLVIFAR 220
           +TEP  GSD + + T A K    +I+ GQK WI N   A+   + AR
Sbjct: 120 VTEPGAGSDVAGIKTKAEKKGDEYIINGQKMWITNGGKANWYFLLAR 166

MCADs are mitochondrial beta-oxidation enzymes, which catalyze the alpha,beta dehydrogenation of the corresponding medium chain acyl-CoA by FAD, which becomes reduced. The reduced form of MCAD is reoxidized in the oxidative half-reaction by electron-transferring flavoprotein (ETF), from which the electrons are transferred to the mitochondrial respiratory chain coupled with ATP synthesis. MCAD is a homotetramer. Length = 378

>gnl|CDD|215284 PLN02519, PLN02519, isovaleryl-CoA dehydrogenase

 Score = 81.8 bits (202), Expect = 5e-18
 Identities = 53/195 (27%), Positives = 87/195 (44%), Gaps = 5/195 (2%)

Query: 35  ATPASKFPPCASDYYQFDDLLTSEEQAVRMK--VRECMEKEIAPIMAEYWEKAEFPFHV- 91
           +   ++    A  +      L  ++  ++ K  V++  ++ IAP  A       FP  V 
Sbjct: 4   SAAKARRRGLARRFSSSSSSLLFDDTQLQFKESVQQFAQENIAPHAAAIDATNSFPKDVN 63

Query: 92  -IPKLGALRVAGGTI-KGYGCPGHSVTGAAIAIAEIARVDASCSTFILVHSSLAMLTIAL 149
               +G   + G T  + YG  G       IA+ EI+R   S       HS+L +  +  
Sbjct: 64  LWKLMGDFNLHGITAPEEYGGLGLGYLYHCIAMEEISRASGSVGLSYGAHSNLCINQLVR 123

Query: 150 CGSEEQKQKYLPSLAQLNTIACWALTEPAYGSDASALNTTATKVEGGWILEGQKRWIGNS 209
            G+  QK+KYLP L     +   A++EP  GSD  ++   A +V+GG++L G K W  N 
Sbjct: 124 NGTPAQKEKYLPKLISGEHVGALAMSEPNSGSDVVSMKCKAERVDGGYVLNGNKMWCTNG 183

Query: 210 TFADVLVIFARNTTT 224
             A  LV++A+    
Sbjct: 184 PVAQTLVVYAKTDVA 198

Length = 404

>gnl|CDD|145755 pfam02770, Acyl-CoA_dh_M, Acyl-CoA dehydrogenase, middle domain

 Score = 72.5 bits (179), Expect = 3e-17
 Identities = 24/50 (48%), Positives = 34/50 (68%)

Query: 171 CWALTEPAYGSDASALNTTATKVEGGWILEGQKRWIGNSTFADVLVIFAR 220
            +ALTEP  GSD ++L TTA +   GW+L G+K WI N+  AD+ ++ AR
Sbjct: 1   AFALTEPGAGSDLASLETTAERDGDGWVLNGRKWWITNAALADLALVLAR 50

Central domain of Acyl-CoA dehydrogenase has a beta-barrel fold. Length = 52

>gnl|CDD|185640 PTZ00461, PTZ00461, isovaleryl-CoA dehydrogenase; Provisional

 Score = 76.9 bits (189), Expect = 3e-16
 Identities = 52/184 (28%), Positives = 78/184 (42%), Gaps = 4/184 (2%)

Query: 41  FPPCASDYYQFDDLL--TSEEQAVRMKVRECMEKEIAPIMAEYWEKAEFPFHVIPKLGAL 98
                S    F DL   T E  A+R  V +   + +     E      F   +  +LG L
Sbjct: 21  AATMTSASRAFMDLYNPTPEHAALRETVAKFSREVVDKHAREDDINMHFNRDLFKQLGDL 80

Query: 99  RVAGGTI-KGYGCPGHSVTGAAIAIAEIARVDASCSTFILVHSSLAMLTIALCGSEEQKQ 157
            V G T+ +  G  G     A I   E+++ D       L HS L +       S  Q+ 
Sbjct: 81  GVMGVTVPEADGGAGMDAVAAVIIHHELSKYDPGFCLAYLAHSMLFVNNFYYSASPAQRA 140

Query: 158 KYLPSLAQLNTIACWALTEPAYGSDASALNTTATKV-EGGWILEGQKRWIGNSTFADVLV 216
           ++LP +     +    ++EP  G+D   + TTA K   G ++L G K WI N T ADV +
Sbjct: 141 RWLPKVLTGEHVGAMGMSEPGAGTDVLGMRTTAKKDSNGNYVLNGSKIWITNGTVADVFL 200

Query: 217 IFAR 220
           I+A+
Sbjct: 201 IYAK 204

Length = 410

>gnl|CDD|173841 cd01152, ACAD_fadE6_17_26, Putative acyl-CoA dehydrogenases similar to fadE6, fadE17, and fadE26

 Score = 72.8 bits (179), Expect = 6e-15
 Identities = 47/170 (27%), Positives = 70/170 (41%), Gaps = 7/170 (4%)

Query: 57  SEEQAVRMKVRECMEKEIAP-IMAEYWEKAEFPFHVIPKLGALRVAGGTI-----KGYGC 110
             E+A R +VR  +   + P +  E             +      A G       K YG 
Sbjct: 1   PSEEAFRAEVRAWLAAHLPPELREESALGYREGREDRRRWQRALAAAGWAAPGWPKEYGG 60

Query: 111 PGHSVTGAAIAIAEIARVDASCSTFILVHSSLAMLTIALCGSEEQKQKYLPSLAQLNTIA 170
            G S+    I   E+A   A    F  +   LA  TI   G++EQK+++LP +     I 
Sbjct: 61  RGASLMEQLIFREEMAAAGAPVP-FNQIGIDLAGPTILAYGTDEQKRRFLPPILSGEEIW 119

Query: 171 CWALTEPAYGSDASALNTTATKVEGGWILEGQKRWIGNSTFADVLVIFAR 220
           C   +EP  GSD + L T A +    W++ GQK W   + +AD   +  R
Sbjct: 120 CQGFSEPGAGSDLAGLRTRAVRDGDDWVVNGQKIWTSGAHYADWAWLLVR 169

Putative acyl-CoA dehydrogenases (ACAD). Mitochondrial acyl-CoA dehydrogenases (ACAD) catalyze the alpha, beta dehydrogenation of the corresponding trans-enoyl-CoA by FAD, which becomes reduced. The reduced form of ACAD is reoxidized in the oxidative half-reaction by electron-transferring flavoprotein (ETF), from which the electrons are transferred to the mitochondrial respiratory chain coupled with ATP synthesis. The ACD family includes the eukaryotic beta-oxidation, as well as amino acid catabolism enzymes. These enzymes share high sequence similarity, but differ in their substrate specificities. The mitochondrial ACD's are generally homotetramers and have an active site glutamate at a conserved position. Length = 380

>gnl|CDD|183454 PRK12341, PRK12341, putative acyl-CoA dehydrogenase; Provisional

 Score = 62.8 bits (153), Expect = 1e-11
 Identities = 40/173 (23%), Positives = 72/173 (41%), Gaps = 12/173 (6%)

Query: 55  LTSEEQAVRMKVRECMEKEIA-PIMAEYWEKAEFPFHVIPKLGALRVAG----GTIKGYG 109
           LT E++ +   +RE + +           E   +P   +    AL   G    G  + +G
Sbjct: 5   LTEEQELLLASIRELITRNFPEEYFRTCDENGTYPREFMR---ALADNGISMLGVPEEFG 61

Query: 110 CPGHSVTGAAIAIAEIARVDASCSTFILVHSSLAMLTIALCGSEEQKQKYLPSLAQLNTI 169
                     + + E+++     +   L+ +   + ++   GS EQ +K   S  +    
Sbjct: 62  GTPADYVTQMLVLEEVSK---CGAPAFLITNGQCIHSMRRFGSAEQLRKTAESTLETGDP 118

Query: 170 A-CWALTEPAYGSDASALNTTATKVEGGWILEGQKRWIGNSTFADVLVIFARN 221
           A   ALTEP  GSD ++  TT T+  G   L GQK +I  +     +++ AR+
Sbjct: 119 AYALALTEPGAGSDNNSATTTYTRKNGKVYLNGQKTFITGAKEYPYMLVLARD 171

Length = 381

>gnl|CDD|132248 TIGR03204, pimC_large, pimeloyl-CoA dehydrogenase, large subunit

 Score = 62.3 bits (151), Expect = 2e-11
 Identities = 31/90 (34%), Positives = 47/90 (52%), Gaps = 4/90 (4%)

Query: 151 GSEEQKQKYLPSLAQLNTIACWALTEPAYGSDASALNTTATKVEGGWILEGQKRWIGNST 210
           G+EEQK+++LP +A ++   C   +EP  GSD ++L T A K    WI+ GQK W   + 
Sbjct: 104 GNEEQKKRFLPRIANVDDWWCQGFSEPGSGSDLASLKTKAEKKGDKWIINGQKTWTTLAQ 163

Query: 211 FADVLVIFARNTTTNQINGYANQSIKFVLL 240
            AD +    R   T +        I F+L+
Sbjct: 164 HADWIFCLCRTDPTAK----KQMGISFILV 189

Members of this protein family are the PimC proteins of species such as Rhodopseudomonas palustris and Bradyrhizobium japonicum. The pimFABCDE operon encodes proteins for the metabolism of straight chain dicarboxylates of seven to fourteen carbons. Especially relevant is pimeloyl-CoA, basis of the gene symbol, as it is a catabolite of benzoyl-CoA degradation, which occurs in Rhodopseudomonas palustris. Length = 395

>gnl|CDD|173842 cd01153, ACAD_fadE5, Putative acyl-CoA dehydrogenases similar to fadE5

 Score = 58.6 bits (142), Expect = 4e-10
 Identities = 33/92 (35%), Positives = 44/92 (47%), Gaps = 4/92 (4%)

Query: 119 AIAIAEI-ARVDASCSTFILVHSSLAMLTIALCGSEEQKQKYLPSLAQLNTIACWALTEP 177
             A+AEI +R DA            A  T+   G+E Q++K++P LA+        LTEP
Sbjct: 69  YSALAEIFSRGDAPLMYASGTQG--AAATLLAHGTEAQREKWIPRLAEGEWTGTMCLTEP 126

Query: 178 AYGSDASALNTTATKVEGG-WILEGQKRWIGN 208
             GSD  AL T A     G W + G KR+I  
Sbjct: 127 DAGSDLGALRTKAVYQADGSWRINGVKRFISA 158

Putative acyl-CoA dehydrogenase (ACAD). Mitochondrial acyl-CoA dehydrogenases (ACAD) catalyze the alpha,beta dehydrogenation of the corresponding trans-enoyl-CoA by FAD, which becomes reduced. The reduced form of ACAD is reoxidized in the oxidative half-reaction by electron-transferring flavoprotein (ETF), from which the electrons are transferred to the mitochondrial respiratory chain coupled with ATP synthesis. The ACD family includes the eukaryotic beta-oxidation, as well as amino acid catabolism enzymes. These enzymes share high sequence similarity, but differ in their substrate specificities. The mitochondrial ACD's are generally homotetramers and have an active site glutamate at a conserved position. Length = 407

>gnl|CDD|179566 PRK03354, PRK03354, crotonobetainyl-CoA dehydrogenase; Validated

 Score = 56.4 bits (136), Expect = 2e-09
 Identities = 47/176 (26%), Positives = 74/176 (42%), Gaps = 18/176 (10%)

Query: 55  LTSEEQAVRMKVRECMEKE-IAPIMAEYWEKAEFPFHVIPKLGALRV--------AGGTI 105
           L  E++     +RE M  E      AE    + +P   +  L  + +         GG  
Sbjct: 5   LNDEQELFVAGIRELMASENWEAYFAECDRDSVYPERFVKALADMGIDSLLIPEEHGGLD 64

Query: 106 KGYGCPGHSVTGAAIAIAEIARVDASCSTFILVHSSLAMLTIALCGSEEQKQKYLPSLAQ 165
            G+      VT AA+   E+ R+ A   T++L        T    G++EQ  K +     
Sbjct: 65  AGF------VTLAAV-WMELGRLGAP--TYVLYQLPGGFNTFLREGTQEQIDKIMAFRGT 115

Query: 166 LNTIACWALTEPAYGSDASALNTTATKVEGGWILEGQKRWIGNSTFADVLVIFARN 221
              +   A+TEP  GSD  +L TT T+  G   L G K +I +S +   +V+ AR+
Sbjct: 116 GKQMWNSAITEPGAGSDVGSLKTTYTRRNGKVYLNGSKCFITSSAYTPYIVVMARD 171

Length = 380

>gnl|CDD|236528 PRK09463, fadE, acyl-CoA dehydrogenase; Reviewed

 Score = 56.0 bits (136), Expect = 4e-09
 Identities = 26/66 (39%), Positives = 36/66 (54%), Gaps = 12/66 (18%)

Query: 151 GSEEQKQKYLPSLAQLNTIACWALTEPAYGSDASALNTTATKVEGGWILEGQ-------- 202
           G++EQK  YLP LA+   I C+ALT P  GSDA ++  T    +G W  +G+        
Sbjct: 176 GTDEQKDHYLPRLARGEEIPCFALTSPEAGSDAGSIPDTGVVCKGEW--QGEEVLGMRLT 233

Query: 203 --KRWI 206
             KR+I
Sbjct: 234 WNKRYI 239

Length = 777

>gnl|CDD|173839 cd01150, AXO, Peroxisomal acyl-CoA oxidase

 Score = 55.8 bits (135), Expect = 5e-09
 Identities = 32/114 (28%), Positives = 49/114 (42%), Gaps = 14/114 (12%)

Query: 127 RVDASCSTFILVHSSLAMLTIALCGSEEQKQKYLPSLAQLNTIACWALTEPAYGSDASAL 186
             D S    + +H  L    I   G++E +  +L     L  I C+A TE  +GS+   L
Sbjct: 93  GYDLSLGAKLGLHLGLFGNAIKNLGTDEHQDYWLQGANNLEIIGCFAQTELGHGSNLQGL 152

Query: 187 NTTAT--KVEGGWI-----LEGQKRWIGN----STFADVLVIFARNTTTNQING 229
            TTAT   +   ++         K W GN    +T A   V+FA+  T  + +G
Sbjct: 153 ETTATYDPLTQEFVINTPDFTATKWWPGNLGKTATHA---VVFAQLITPGKNHG 203

Peroxisomal acyl-CoA oxidases (AXO) catalyze the first set in the peroxisomal fatty acid beta-oxidation, the alpha,beta dehydrogenation of the corresponding trans-enoyl-CoA by FAD, which becomes reduced. In a second oxidative half-reaction, the reduced FAD is reoxidized by molecular oxygen. AXO is generally a homodimer, but it has been reported to form a different type of oligomer in yeast. There are several subtypes of AXO's, based on substrate specificity. Palmitoyl-CoA oxidase acts on straight-chain fatty acids and prostanoids; whereas, the closely related Trihydroxycoprostanoly-CoA oxidase has the greatest activity for 2-methyl branched side chains of bile precursors. Pristanoyl-CoA oxidase, acts on 2-methyl branched fatty acids. AXO has an additional domain, C-terminal to the region with similarity to acyl-CoA dehydrogenases, which is included in this alignment. Length = 610

>gnl|CDD|132251 TIGR03207, cyc_hxne_CoA_dh, cyclohexanecarboxyl-CoA dehydrogenase

 Score = 55.3 bits (133), Expect = 5e-09
 Identities = 46/167 (27%), Positives = 74/167 (44%), Gaps = 2/167 (1%)

Query: 55  LTSEEQAVRMKVRECMEKEIAPIMAEYWEKAEFPFHVIPKLGALRVAGGTI-KGYGCPGH 113
           L  + QA+    R    + IAP   E  +       ++  +G +   G  + + +G  G 
Sbjct: 1   LNEDLQALADTARRFARERIAPGFKERDKTRVLDRELMRDMGEMGFIGPELPEEHGGLGM 60

Query: 114 SVTGAAIAIAEIARVDASCSTFILVHSSLAMLTIALCGSEEQKQKYLPSLAQLNTIACWA 173
               A +   +IAR D S S ++ + +SL    +A     E  + +L  L     +   A
Sbjct: 61  GCLAAGVIHEQIARADLSMS-YVNLLASLNGQILAQHARPEIAKPWLGQLIAGEALFAIA 119

Query: 174 LTEPAYGSDASALNTTATKVEGGWILEGQKRWIGNSTFADVLVIFAR 220
           LTEP  GSDA+ L   A +    ++L G+K  I  +  AD  V+FAR
Sbjct: 120 LTEPRGGSDAARLRLRAERDGDDYVLNGEKTSISAADQADAAVVFAR 166

Cyclohex-1-ene-1carboxyl-CoA is an intermediate in the anaerobic degradation of benzoyl-CoA derived from varioius aromatic compounds, in Rhodopseudomonas palustris but not Thauera aromatica. The aliphatic compound cyclohexanecarboxylate, can be converted to the same intermediate in two steps. The first step is its ligation to coenzyme A. The second is the action of this enzyme, cyclohexanecarboxyl-CoA dehydrogenase. Length = 372

>gnl|CDD|237277 PRK13026, PRK13026, acyl-CoA dehydrogenase; Reviewed

 Score = 53.4 bits (129), Expect = 3e-08
 Identities = 30/73 (41%), Positives = 38/73 (52%), Gaps = 8/73 (10%)

Query: 151 GSEEQKQKYLPSLAQLNTIACWALTEPAYGSDASALNTTAT----KVEG----GWILEGQ 202
           G++EQK  +LP LA    I C+ALT P  GSDA A+  T      + EG    G  L   
Sbjct: 175 GTQEQKDYWLPRLADGTEIPCFALTGPEAGSDAGAIPDTGIVCRGEFEGEEVLGLRLTWD 234

Query: 203 KRWIGNSTFADVL 215
           KR+I  +  A VL
Sbjct: 235 KRYITLAPVATVL 247

Length = 774

>gnl|CDD|173844 cd01155, ACAD_FadE2, Acyl-CoA dehydrogenases similar to fadE2

 Score = 50.5 bits (121), Expect = 2e-07
 Identities = 19/67 (28%), Positives = 35/67 (52%), Gaps = 1/67 (1%)

Query: 144 MLTIALCGSEEQKQKYLPSLAQLNTIACWALTEPAYG-SDASALNTTATKVEGGWILEGQ 202
           M  +   GSEEQK+++L  L      + +A+TEP    SDA+ +  +  +    +++ G+
Sbjct: 101 MEVLHRYGSEEQKKQWLEPLLDGKIRSAFAMTEPDVASSDATNIECSIERDGDDYVINGR 160

Query: 203 KRWIGNS 209
           K W   +
Sbjct: 161 KWWSSGA 167

FadE2-like Acyl-CoA dehydrogenase (ACAD). Acyl-CoA dehydrogenases (ACAD) catalyze the alpha,beta dehydrogenation of the corresponding trans-enoyl-CoA by FAD, which becomes reduced. The reduced form of ACAD is reoxidized in the oxidative half-reaction by electron-transferring flavoprotein (ETF), from which the electrons are transferred to the mitochondrial respiratory chain coupled with ATP synthesis. The ACAD family includes the eukaryotic beta-oxidation, as well as amino acid catabolism enzymes. These enzymes share high sequence similarity, but differ in their substrate specificities. ACAD's are generally homotetramers and have an active site glutamate at a conserved position. Length = 394

>gnl|CDD|185635 PTZ00456, PTZ00456, acyl-CoA dehydrogenase; Provisional

 Score = 48.3 bits (115), Expect = 2e-06
 Identities = 27/83 (32%), Positives = 40/83 (48%), Gaps = 5/83 (6%)

Query: 143 AMLTIALCGSEEQKQKYLPSLAQLNTIACWALTEPAYGSDASALNTTATKV-EGGWILEG 201
           A  T+   GSEEQK++YL  L          LTEP  G+D   + T A    +G + + G
Sbjct: 156 AANTLMAWGSEEQKEQYLTKLVSGEWSGTMCLTEPQCGTDLGQVKTKAEPSADGSYKITG 215

Query: 202 QKRWI--GNSTFAD--VLVIFAR 220
            K +I  G+    +  V ++ AR
Sbjct: 216 TKIFISAGDHDLTENIVHIVLAR 238

Length = 622

>gnl|CDD|178062 PLN02443, PLN02443, acyl-coenzyme A oxidase

 Score = 46.4 bits (110), Expect = 5e-06
 Identities = 21/58 (36%), Positives = 34/58 (58%)

Query: 134 TFILVHSSLAMLTIALCGSEEQKQKYLPSLAQLNTIACWALTEPAYGSDASALNTTAT 191
            +  +H  + +  I   G+EEQ++K+LP   ++  I C+A TE  +GS+   L TTAT
Sbjct: 97  GYTDLHWGMFVPAIKGQGTEEQQKKWLPLAYKMQIIGCYAQTELGHGSNVQGLETTAT 154

Length = 664

>gnl|CDD|185639 PTZ00460, PTZ00460, acyl-CoA dehydrogenase; Provisional

 Score = 45.6 bits (108), Expect = 1e-05
 Identities = 20/54 (37%), Positives = 31/54 (57%)

Query: 138 VHSSLAMLTIALCGSEEQKQKYLPSLAQLNTIACWALTEPAYGSDASALNTTAT 191
           VH ++ +    + G++EQ   ++PSL     + C+A TE  +GSD   L TTAT
Sbjct: 97  VHFAMVIPAFQVLGTDEQINLWMPSLLNFEIVGCYAQTELGHGSDVQNLETTAT 150

Length = 646

>gnl|CDD|215342 PLN02636, PLN02636, acyl-coenzyme A oxidase

 Score = 44.5 bits (105), Expect = 2e-05
 Identities = 36/112 (32%), Positives = 56/112 (50%), Gaps = 15/112 (13%)

Query: 121 AIAE-IARVDASCSTFILVHSSLAMLTIALCGSEEQKQKYLPSLAQLNTIACWALTEPAY 179
           AI E +  VD S    + V  SL   ++   G+++ + KY   +  L+   C+A+TE  +
Sbjct: 125 AITEAVGSVDMSLGIKLGVQYSLWGGSVINLGTKKHRDKYFDGIDNLDYPGCFAMTELHH 184

Query: 180 GSDASALNTTAT--KVEGGWIL----EGQ-KRWIGNST----FADVLVIFAR 220
           GS+   L TTAT   +   +++    +G  K WIGN+     FA V   FAR
Sbjct: 185 GSNVQGLQTTATFDPLTDEFVINTPNDGAIKWWIGNAAVHGKFATV---FAR 233

Length = 686

>gnl|CDD|132247 TIGR03203, pimD_small, pimeloyl-CoA dehydrogenase, small subunit

 Score = 44.2 bits (104), Expect = 3e-05
 Identities = 23/70 (32%), Positives = 36/70 (51%)

Query: 151 GSEEQKQKYLPSLAQLNTIACWALTEPAYGSDASALNTTATKVEGGWILEGQKRWIGNST 210
           GS  QK  +LP +   +    +A  E     D   ++TTA K   GW+++G+K  + N  
Sbjct: 101 GSAAQKAAHLPGIIDGSKTFAFAQLEKNSRYDLGDVSTTAKKTGDGWVIDGEKFVVLNGE 160

Query: 211 FADVLVIFAR 220
            AD L++ AR
Sbjct: 161 TADTLIVTAR 170

Members of this protein family are the PimD proteins of species such as Rhodopseudomonas palustris, Bradyrhizobium japonicum. The pimFABCDE operon encodes proteins for the metabolism of straight chain dicarboxylates of seven to fourteen carbons. Especially relevant is pimeloyl-CoA, basis of the gene symbol, as it is a catabolite of benzoyl-CoA degradation, which occurs in Rhodopseudomonas palustris. Length = 378

>gnl|CDD|173843 cd01154, AidB, Proteins involved in DNA damage response, similar to the AidB gene product

 Score = 41.2 bits (97), Expect = 3e-04
 Identities = 26/75 (34%), Positives = 34/75 (45%), Gaps = 7/75 (9%)

Query: 151 GSEEQKQKYLPSLAQ----LNTIACWALTEPAYGSDASALNTTATKVEGG-WILEGQKRW 205
           G EE KQ     L+           W +TE   GSD  A  TTA +  GG + L G K W
Sbjct: 127 GPEELKQYLPGLLSDRYKTGLLGGTW-MTEKQGGSDLGANETTAERSGGGVYRLNGHK-W 184

Query: 206 IGNSTFADVLVIFAR 220
             ++  AD  ++ AR
Sbjct: 185 FASAPLADAALVLAR 199

AidB is one of several genes involved in the SOS adaptive response to DNA alkylation damage, whose expression is activated by the Ada protein. Its function has not been entirely elucidated; however, it is similar in sequence and function to acyl-CoA dehydrogenases. It has been proposed that aidB directly destroys DNA alkylating agents such as nitrosoguanidines (nitrosated amides) or their reaction intermediates. Length = 418

>gnl|CDD|185636 PTZ00457, PTZ00457, acyl-CoA dehydrogenase; Provisional

 Score = 40.6 bits (95), Expect = 5e-04
 Identities = 32/98 (32%), Positives = 46/98 (46%), Gaps = 2/98 (2%)

Query: 108 YGCPGHSVTGAAIAIAEIARVDASCSTFILVHSSLAMLTIALCGSEEQKQKYLPSLAQLN 167
           YG  G   T  A+   E+     S     + HS      ++  GS+E K KYL +++   
Sbjct: 74  YGGLGLGHTAHALIYEEVGTNCDSKLLSTIQHSGFCTYLLSTVGSKELKGKYLTAMSDGT 133

Query: 168 TIACWALTEPAYGSDASALNTTAT-KVEGGWILEGQKR 204
            +  WA TE   GSD S   T A+   +G ++L GQKR
Sbjct: 134 IMMGWA-TEEGCGSDISMNTTKASLTDDGSYVLTGQKR 170

Length = 520

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	240
KOG0141	421	consensus Isovaleryl-CoA dehydrogenase [Amino acid	100.0
KOG0139	398	consensus Short-chain acyl-CoA dehydrogenase [Lipi	100.0
KOG0138	432	consensus Glutaryl-CoA dehydrogenase [Amino acid t	100.0
KOG0140	408	consensus Medium-chain acyl-CoA dehydrogenase [Lip	100.0
PLN02526	412	acyl-coenzyme A oxidase	100.0
cd01151	386	GCD Glutaryl-CoA dehydrogenase. Glutaryl-CoA dehyd	100.0
PRK09463	777	fadE acyl-CoA dehydrogenase; Reviewed	100.0
PRK03354	380	crotonobetainyl-CoA dehydrogenase; Validated	100.0
PRK13026	774	acyl-CoA dehydrogenase; Reviewed	100.0
TIGR03203	378	pimD_small pimeloyl-CoA dehydrogenase, small subun	100.0
PRK12341	381	putative acyl-CoA dehydrogenase; Provisional	100.0
cd01161	409	VLCAD Very long chain acyl-CoA dehydrogenase. VLCA	100.0
PLN02519	404	isovaleryl-CoA dehydrogenase	100.0
cd01156	376	IVD Isovaleryl-CoA dehydrogenase. Isovaleryl-CoA d	100.0
cd01157	378	MCAD Medium chain acyl-CoA dehydrogenase. MCADs ar	100.0
TIGR03207	372	cyc_hxne_CoA_dh cyclohexanecarboxyl-CoA dehydrogen	100.0
PTZ00461	410	isovaleryl-CoA dehydrogenase; Provisional	100.0
TIGR03204	395	pimC_large pimeloyl-CoA dehydrogenase, large subun	100.0
cd01160	372	LCAD Long chain acyl-CoA dehydrogenase. LCAD is an	100.0
cd01162	375	IBD Isobutyryl-CoA dehydrogenase. Isobutyryl-CoA d	100.0
cd01158	373	SCAD_SBCAD Short chain acyl-CoA dehydrogenases and	100.0
cd01152	380	ACAD_fadE6_17_26 Putative acyl-CoA dehydrogenases	99.98
cd01155	394	ACAD_FadE2 Acyl-CoA dehydrogenases similar to fadE	99.98
COG1960	393	CaiA Acyl-CoA dehydrogenases [Lipid metabolism]	99.97
cd01153	407	ACAD_fadE5 Putative acyl-CoA dehydrogenases simila	99.97
PTZ00456	622	acyl-CoA dehydrogenase; Provisional	99.97
PLN02636	686	acyl-coenzyme A oxidase	99.97
KOG0137	634	consensus Very-long-chain acyl-CoA dehydrogenase [	99.97
cd01163	377	DszC Dibenzothiophene (DBT) desulfurization enzyme	99.97
PTZ00457	520	acyl-CoA dehydrogenase; Provisional	99.97
PLN02876	822	acyl-CoA dehydrogenase	99.96
PLN02312	680	acyl-CoA oxidase	99.95
cd01154	418	AidB Proteins involved in DNA damage response, sim	99.94
cd01159	370	NcnH Naphthocyclinone hydroxylase. Naphthocyclinon	99.92
PF02771	113	Acyl-CoA_dh_N: Acyl-CoA dehydrogenase, N-terminal	99.87
cd00567	327	ACAD Acyl-CoA dehydrogenase. Both mitochondrial ac	99.86
KOG1469	392	consensus Predicted acyl-CoA dehydrogenase [Genera	99.84
cd01150	610	AXO Peroxisomal acyl-CoA oxidase. Peroxisomal acyl	99.84
PRK11561	538	isovaleryl CoA dehydrogenase; Provisional	99.84
PTZ00460	646	acyl-CoA dehydrogenase; Provisional	99.79
PLN02443	664	acyl-coenzyme A oxidase	99.76
PF02770	52	Acyl-CoA_dh_M: Acyl-CoA dehydrogenase, middle doma	99.73
KOG0135	661	consensus Pristanoyl-CoA/acyl-CoA oxidase [Lipid t	99.71
KOG0136	670	consensus Acyl-CoA oxidase [Lipid transport and me	98.92
TIGR02309	477	HpaB-1 4-hydroxyphenylacetate 3-monooxygenase, oxy	98.15
PF11794	264	HpaB_N: 4-hydroxyphenylacetate 3-hydroxylase N ter	94.68
PF14749	125	Acyl-CoA_ox_N: Acyl-coenzyme A oxidase N-terminal;	92.12
COG2368	493	Aromatic ring hydroxylase [Secondary metabolites b	91.3
TIGR02310	519	HpaB-2 4-hydroxyphenylacetate 3-monooxygenase, oxy	89.89

>KOG0141 consensus Isovaleryl-CoA dehydrogenase [Amino acid transport and metabolism; Lipid transport and metabolism]

Probab=100.00  E-value=1.1e-41  Score=279.00  Aligned_cols=183  Identities=32%  Similarity=0.456  Sum_probs=174.6

Q ss_pred             CCCCHHHHHHHHHHHHHHHhhccccHHHHHHhCCC--CHHHHHHHHhcCcCCC-ccccCCCCCCCHHHHHHHHHHHHccC
Q 026317           53 DLLTSEEQAVRMKVRECMEKEIAPIMAEYWEKAEF--PFHVIPKLGALRVAGG-TIKGYGCPGHSVTGAAIAIAEIARVD  129 (240)
Q Consensus        53 ~~l~~~~~~l~~~~~~~~~~~~~~~~~~~d~~~~~--~~~~~~~l~~~Gl~~l-~p~~~GG~g~~~~~~~~v~e~la~~~  129 (240)
                      +.+++|++.+++.+++|+.+++.|++.++|+.+.+  .+++|+++.+.|++|+ .|++|||.|.+....++++||++|+.
T Consensus        39 ~g~~~e~~~~r~sv~kF~qeelaP~a~eidk~n~~~~~r~~WkklG~~gllGita~~~~GG~G~~y~~h~ivmEE~sra~  118 (421)
T KOG0141|consen   39 FGLSDEQDQLRESVRKFFQEELAPHASEIDKANEFKDLREFWKKLGKQGLLGITAPEEYGGSGGGYLSHCIVMEEISRAS  118 (421)
T ss_pred             cCCCHHHHHHHHHHHHHHHHhhcchhhhhhhcCCcchHHHHHHHhhhcCcccccchhhhCCCchhHHHHHHHHHHHHhhc
Confidence            44899999999999999999999999999999999  5789999999999999 99999999999999999999999999


Q ss_pred             CcchHHHHhhhhHHHHHHhccCCHHHHHhhchhhhcCCceEEEEeeCCCCCCCcCCCceEEEEeCCEEEEeeeEeeecCC
Q 026317          130 ASCSTFILVHSSLAMLTIALCGSEEQKQKYLPSLAQLNTIACWALTEPAYGSDASALNTTATKVEGGWILEGQKRWIGNS  209 (240)
Q Consensus       130 ~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~l~~l~~G~~~~~~a~tEp~~Gsd~~~~~t~a~~~~~g~~LnG~K~~vs~~  209 (240)
                      ..+++.++.|.+++..-|.+.|+++|+++|||.+.+|+.++++|||||++|||+.++.++|++++++|+|||.|.||||+
T Consensus       119 g~v~lsygaHSnlcinqlvrnGseeQkekylPkl~sGe~iGalAMsEp~AGSDvv~mK~~Aek~g~~yiLNGsK~witNG  198 (421)
T KOG0141|consen  119 GGVALSYGAHSNLCINQLVRNGSEEQKEKYLPKLISGEHIGALAMSEPGAGSDVVSMKLKAEKKGDDYILNGSKFWITNG  198 (421)
T ss_pred             CCcccccccccchHHHHHHhcCCHHHHHhhhhhhhcccccceeeecCCCCCCccceeeeeceecCCcEEecCcEEEEecC
Confidence            88899999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCCCEEEEEEEeCC-----CCCeeEEEEeCC
Q 026317          210 TFADVLVIFARNTT-----TNQINGYANQSI  235 (240)
Q Consensus       210 ~~Ad~~~v~a~~~~-----~~~~~~flVp~~  235 (240)
                      +.||.++|.|+|+.     ..|+++|+|++.
T Consensus       199 ~~advliVyAkTd~~a~~~~hGIt~FiVEkg  229 (421)
T KOG0141|consen  199 PDADVLIVYAKTDHSAVPPSHGITAFIVEKG  229 (421)
T ss_pred             CCCcEEEEEEecCCCCCCCcCceEEEEEcCC
Confidence            99999999999853     368999999864

>KOG0139 consensus Short-chain acyl-CoA dehydrogenase [Lipid transport and metabolism]

Probab=100.00  E-value=7.3e-41  Score=277.81  Aligned_cols=183  Identities=36%  Similarity=0.516  Sum_probs=174.1

Q ss_pred             CCCHHHHHHHHHHHHHHHhhccccHHHHHHhCCCCHHHHHHHHhcCcCCC-ccccCCCCCCCHHHHHHHHHHHHccCCcc
Q 026317           54 LLTSEEQAVRMKVRECMEKEIAPIMAEYWEKAEFPFHVIPKLGALRVAGG-TIKGYGCPGHSVTGAAIAIAEIARVDASC  132 (240)
Q Consensus        54 ~l~~~~~~l~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~l~~~Gl~~l-~p~~~GG~g~~~~~~~~v~e~la~~~~~~  132 (240)
                      .+++++.++++.+|+|+.+.+.|.+++.|++.++|..+++.+.++|++++ +|++|||.|.++..+++++||+++.|+++
T Consensus        36 ~l~E~e~~l~~tvrkfa~~~i~Plv~~mD~~~~~~~~v~k~~fe~Glmgv~vpeeyGGsG~df~~~~~v~EEisk~d~sv  115 (398)
T KOG0139|consen   36 ILSETEQMLQKTVRKFAQEEIKPLVREMDRESRYPASVIKGLFELGLMGVEVPEEYGGSGLDFFAAAIVIEEISKVDASV  115 (398)
T ss_pred             hcCcHHHHHHHHHHHHHHHhcchHHHhhhhhccCCHHHHHHHhhcCcceeecChhhCCCchhHHHHHHHHHHHhccCccc
Confidence            37899999999999999999999999999999999999999999999999 99999999999999999999999999999


Q ss_pred             hHHHHhhhhHHHHHHhccCCHHHHHhhchhhhcCCceEEEEeeCCCCCCCcCCCceEEEEeCCEEEEeeeEeeecCCCCC
Q 026317          133 STFILVHSSLAMLTIALCGSEEQKQKYLPSLAQLNTIACWALTEPAYGSDASALNTTATKVEGGWILEGQKRWIGNSTFA  212 (240)
Q Consensus       133 ~~~~~~~~~~~~~~l~~~g~~~~~~~~l~~l~~G~~~~~~a~tEp~~Gsd~~~~~t~a~~~~~g~~LnG~K~~vs~~~~A  212 (240)
                      ++++.+|+.+...+|..||+++||++|+|.+ .|+.+++||++||++|||+..+.|+|+++|+.|+|||+|.||||+..|
T Consensus       116 ~~~v~v~ntL~~~~i~~fGteeqK~~~~P~~-~~d~vgsfAlSEpgaGSDa~A~~T~Ak~~Gd~~viNGsKmWItN~~~A  194 (398)
T KOG0139|consen  116 GVIVDVQNTLYLPLIIQFGTEEQKEKYLPKL-TGDLVGSFALSEPGAGSDAFALKTTAKKDGDDYVINGSKMWITNAGEA  194 (398)
T ss_pred             eeEEEecccccchHHHHhCcHHHHhhhcchh-hccccceeeecCCCCCcchHHhhhhHhhcCCeEEEecceeeecCCccc
Confidence            9999999999999999999999999888875 578899999999999999999999999999999999999999999999


Q ss_pred             CEEEEEEEeCCC---CCeeEEEEeCCce
Q 026317          213 DVLVIFARNTTT---NQINGYANQSIKF  237 (240)
Q Consensus       213 d~~~v~a~~~~~---~~~~~flVp~~~~  237 (240)
                      ++++|+|.++..   .|+++|+||+++-
T Consensus       195 ~~~lVfan~d~~~~~Kgit~fiV~rd~~  222 (398)
T KOG0139|consen  195 DWFLVFANADPSKGYKGITCFIVPRDTP  222 (398)
T ss_pred             ceEEEEEecChhhccCceeEEEeeCCCC
Confidence            999999998543   6899999999864

>KOG0138 consensus Glutaryl-CoA dehydrogenase [Amino acid transport and metabolism]

Probab=100.00  E-value=2.2e-39  Score=264.82  Aligned_cols=220  Identities=39%  Similarity=0.546  Sum_probs=205.7

Q ss_pred             ccccccCCCcccccccCCCCCCCCCCCCCCCCcccCCCCCCHHHHHHHHHHHHHHHhhccccHHHHHHhCCCCHHHHHHH
Q 026317           16 ARSSYFNLPALDISVAFPQATPASKFPPCASDYYQFDDLLTSEEQAVRMKVRECMEKEIAPIMAEYWEKAEFPFHVIPKL   95 (240)
Q Consensus        16 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~m~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~l   95 (240)
                      .++.+...+.+.....++.+.+.+.+|+...|+..+...|+++++.+++.+|+++++++.|+..++.+...|+.++..+|
T Consensus        16 ~rs~~s~l~p~e~g~r~~s~~~~s~~P~f~qD~~~l~dqLT~dE~air~~~Reycq~~l~Prvtea~r~e~F~~~i~pem   95 (432)
T KOG0138|consen   16 LRSWVSSLAPTERGGRTQSQLSKSSRPEFWQDPLVLEDQLTEDEIAIRDTFREYCQERLMPRVTEANRNEVFDREIIPEM   95 (432)
T ss_pred             eeehhhcCchhhhccccccccccccCCccccchhhhhhhcCHHHHHHHHHHHHHHHHHhhhHHHHHhhhccCChhhhhhh
Confidence            44556666677777677888888889999999999999999999999999999999999999999999999999999999


Q ss_pred             HhcCcCCCccccCCCCCCCHHHHHHHHHHHHccCCcchHHHHhhhhHHHHHHhccCCHHHHHhhchhhhcCCceEEEEee
Q 026317           96 GALRVAGGTIKGYGCPGHSVTGAAIAIAEIARVDASCSTFILVHSSLAMLTIALCGSEEQKQKYLPSLAQLNTIACWALT  175 (240)
Q Consensus        96 ~~~Gl~~l~p~~~GG~g~~~~~~~~v~e~la~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~l~~l~~G~~~~~~a~t  175 (240)
                      ..+|++|...+-||-.|.|...+..+..|+.|.|.+....+++|.++++.+|..+|+++||++|||.+++|+.++||++|
T Consensus        96 GsmGvlG~tikGYGCaG~S~vaygl~~rEveRVDs~yrs~~sVqsSL~m~~Iy~~GSE~QkqkYlPslA~g~~igcfgLT  175 (432)
T KOG0138|consen   96 GSMGVLGPTIKGYGCAGVSSVAYGLLAREVERVDSGYRSAMSVQSSLVMGPIYAYGSEEQKQKYLPSLAKGKLIGCFGLT  175 (432)
T ss_pred             hccccccCcccCcCCCchHHHHHHHHHHHHHHhhhhchhhhhhhhhhhhhhHhhcCCHHHHhhhhhhhhcCceeeEEecc
Confidence            99999998889999999999999999999999999988889999999999999999999999999999999999999999


Q ss_pred             CCCCCCCcCCCceEEEEeCCE--EEEeeeEeeecCCCCCCEEEEEEEeCCCCCeeEEEEeCC
Q 026317          176 EPAYGSDASALNTTATKVEGG--WILEGQKRWIGNSTFADVLVIFARNTTTNQINGYANQSI  235 (240)
Q Consensus       176 Ep~~Gsd~~~~~t~a~~~~~g--~~LnG~K~~vs~~~~Ad~~~v~a~~~~~~~~~~flVp~~  235 (240)
                      ||++|||..++.|+|+++.++  |.|||+|+||+|++.||+++|+||++.++.+..|+|+++
T Consensus       176 EPn~GSdpsgmeT~At~~e~~ktyklNGsKtWI~nsp~aDl~vvwAr~~t~n~I~GFi~~k~  237 (432)
T KOG0138|consen  176 EPNHGSDPSGMETRATYDESNKTYKLNGSKTWITNSPMADLFVVWARCETDNKIRGFILEKG  237 (432)
T ss_pred             CCCCCCCcccccceeEEccCCceEEECCeeeeecCCcccceEEEEEecccCCceeeEEEecC
Confidence            999999999999999999887  999999999999999999999999976778999999875

>KOG0140 consensus Medium-chain acyl-CoA dehydrogenase [Lipid transport and metabolism]

Probab=100.00  E-value=8.3e-40  Score=267.77  Aligned_cols=184  Identities=29%  Similarity=0.439  Sum_probs=176.2

Q ss_pred             CCCCCHHHHHHHHHHHHHHHhhccccHHHHHHhCCCCHHHHHHHHhcCcCCC-ccccCCCCCCCHHHHHHHHHHHHccCC
Q 026317           52 DDLLTSEEQAVRMKVRECMEKEIAPIMAEYWEKAEFPFHVIPKLGALRVAGG-TIKGYGCPGHSVTGAAIAIAEIARVDA  130 (240)
Q Consensus        52 ~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~l~~~Gl~~l-~p~~~GG~g~~~~~~~~v~e~la~~~~  130 (240)
                      +|.|+++|.++++.+++|..+++.|.+.++|+.+++|.+++++..++|+.+. +|+.|||.|++.++.+.+.|+|+.+|.
T Consensus        25 sf~L~e~qke~q~~A~kFa~~e~~P~aae~Dk~ge~P~~iirkA~~lG~~~~~ip~~~GG~Gls~l~t~lI~E~LayGCt  104 (408)
T KOG0140|consen   25 SFGLTEDQKEFQEAARKFAKDEMIPNAAEYDKSGEFPWEIIRKAHELGFMNTYIPEDYGGLGLSRLDTCLIFEALAYGCT  104 (408)
T ss_pred             ccCcchHHHHHHHHHHHHHHHhhccchhhhcccCCCcHHHHHHHHHcccCcccCccccCCCCchhHHHHHHHHHHHccch
Confidence            5779999999999999999999999999999999999999999999999999 999999999999999999999999999


Q ss_pred             cchHHHHhhhhHHHHHHhccCCHHHHHhhchhhhcCCceEEEEeeCCCCCCCcCCCceEEEEeCCEEEEeeeEeeecCCC
Q 026317          131 SCSTFILVHSSLAMLTIALCGSEEQKQKYLPSLAQLNTIACWALTEPAYGSDASALNTTATKVEGGWILEGQKRWIGNST  210 (240)
Q Consensus       131 ~~~~~~~~~~~~~~~~l~~~g~~~~~~~~l~~l~~G~~~~~~a~tEp~~Gsd~~~~~t~a~~~~~g~~LnG~K~~vs~~~  210 (240)
                      ++...+..| +++.++|..+|+++||++||++++....+++.++|||++|||+.++.|+|++.+|.|+|||+|.||||+.
T Consensus       105 g~~~~I~~~-~l~~~pi~~~gneeqKkk~lg~l~~~p~~asYcvTEPgAGSDvagikTka~KkGDeYiiNGsKawItg~G  183 (408)
T KOG0140|consen  105 GIQTAISIH-NLAAWPIILSGNEEQKKKYLGRLAEEPKVASYCVTEPGAGSDVAGIKTKAEKKGDEYIINGSKAWITGAG  183 (408)
T ss_pred             hHHHHHhcc-chhhhhehhcCcHHHHHhhhhhhhcchhhhhhhccCCCCCcchhhhhhhhhhcCCEEEEcCceeeeecCC
Confidence            999888877 5899999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCCEEEEEEEeCCC------CCeeEEEEeCCc
Q 026317          211 FADVLVIFARNTTT------NQINGYANQSIK  236 (240)
Q Consensus       211 ~Ad~~~v~a~~~~~------~~~~~flVp~~~  236 (240)
                      +|+|++|+||++++      +++++|+|+.++
T Consensus       184 ~anwyfVlaRtd~~pk~p~~Kaft~fiVe~dT  215 (408)
T KOG0140|consen  184 HANWYFVLARTDPDPKTPAGKAFTAFIVEGDT  215 (408)
T ss_pred             ccceEEEEEecCCCCCCCCCcceEEEEEeCCC
Confidence            99999999998653      469999999875

>PLN02526 acyl-coenzyme A oxidase

Probab=100.00  E-value=1.1e-37  Score=277.45  Aligned_cols=207  Identities=84%  Similarity=1.320  Sum_probs=190.1

Q ss_pred             cccCCCCCCCCCCCCCCCCcccCCCCCCHHHHHHHHHHHHHHHhhccccHHHHHHhCCCCHHHHHHHHhcCcCCC-cccc
Q 026317           29 SVAFPQATPASKFPPCASDYYQFDDLLTSEEQAVRMKVRECMEKEIAPIMAEYWEKAEFPFHVIPKLGALRVAGG-TIKG  107 (240)
Q Consensus        29 ~~~~~~~~~~~~~~~~~~~~~~m~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~l~~~Gl~~l-~p~~  107 (240)
                      +..||+..|.+.+||.-.+++.|+..++++++++++.+++|+.+.+.|...+.++...+|.++|++|.+.||+++ + ++
T Consensus         3 ~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~l~~~~~~f~~~~~~~~~~~~~~~~~~p~~~~~~l~~~G~~~~~v-~~   81 (412)
T PLN02526          3 SVAFPQATPASIFPPSVSDYYQFDDLLTPEEQALRKRVRECMEKEVAPIMTEYWEKAEFPFHIIPKLGSLGIAGGTI-KG   81 (412)
T ss_pred             ccccccCCCCCCCChhhccccccccCCCHHHHHHHHHHHHHHHHhcccchHHHHHhCCCCHHHHHHHHHCCCCcCcc-cc
Confidence            567899999999998888998899999999999999999999999998877777778899999999999999999 7 99


Q ss_pred             CCCCCCCHHHHHHHHHHHHccCCcchHHHHhhhhHHHHHHhccCCHHHHHhhchhhhcCCceEEEEeeCCCCCCCcCCCc
Q 026317          108 YGCPGHSVTGAAIAIAEIARVDASCSTFILVHSSLAMLTIALCGSEEQKQKYLPSLAQLNTIACWALTEPAYGSDASALN  187 (240)
Q Consensus       108 ~GG~g~~~~~~~~v~e~la~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~l~~l~~G~~~~~~a~tEp~~Gsd~~~~~  187 (240)
                      |||.|+++.+++.++|+++++|++++.++.+|..++...+..+|+++||++|++++++|+.++++++|||+.|||+..+.
T Consensus        82 ~GG~G~~~~~~~~~~e~la~~~~s~~~~~~~~~~~~~~~l~~~g~~~q~~~~l~~l~~G~~~~~~a~tEp~~Gsd~~~~~  161 (412)
T PLN02526         82 YGCPGLSITASAIATAEVARVDASCSTFILVHSSLAMLTIALCGSEAQKQKYLPSLAQLDTVACWALTEPDYGSDASSLN  161 (412)
T ss_pred             cCCCCcCHHHHHHHHHHHHhhCchHHHHHHHhhhhHHHHHHHhCCHHHHHHHHHHHhCCCeEEEEEecCCCCCCChhhCe
Confidence            99999999999999999999999877666667656666788999999999999999999999999999999999999999


Q ss_pred             eEEEEeCCEEEEeeeEeeecCCCCCCEEEEEEEeCCCCCeeEEEEeCCc
Q 026317          188 TTATKVEGGWILEGQKRWIGNSTFADVLVIFARNTTTNQINGYANQSIK  236 (240)
Q Consensus       188 t~a~~~~~g~~LnG~K~~vs~~~~Ad~~~v~a~~~~~~~~~~flVp~~~  236 (240)
                      |+|++++|||+|||+|.||||+..|||++|.+++++++++++|+||+++
T Consensus       162 t~a~~~~gg~~lnG~K~~vs~~~~Ad~~lv~a~~~~~~~~~~flV~~~~  210 (412)
T PLN02526        162 TTATKVEGGWILNGQKRWIGNSTFADVLVIFARNTTTNQINGFIVKKGA  210 (412)
T ss_pred             eEEEEECCEEEEEEEEeeecCCCccCEEEEEEEeCCCCCeEEEEEcCCC
Confidence            9999999999999999999999999999999998655678999999865

>cd01151 GCD Glutaryl-CoA dehydrogenase

Probab=100.00  E-value=1.1e-36  Score=269.04  Aligned_cols=186  Identities=46%  Similarity=0.724  Sum_probs=173.1

Q ss_pred             CCCCCCHHHHHHHHHHHHHHHhhccccHHHHHHhCCCCHHHHHHHHhcCcCCCccccCCCCCCCHHHHHHHHHHHHccCC
Q 026317           51 FDDLLTSEEQAVRMKVRECMEKEIAPIMAEYWEKAEFPFHVIPKLGALRVAGGTIKGYGCPGHSVTGAAIAIAEIARVDA  130 (240)
Q Consensus        51 m~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~l~~~Gl~~l~p~~~GG~g~~~~~~~~v~e~la~~~~  130 (240)
                      |++.++++++++++.+++|+++.+.|.+.+.++.+.+|.++|++|.+.||++++|++|||.|+++.++..++|++++.|.
T Consensus         9 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~l~~~Gl~~~vP~~~GG~g~~~~~~~~v~e~l~~~~~   88 (386)
T cd01151           9 LDDLLTEEERAIRDTAREFCQEELAPRVLEAYREEKFDRKIIEEMGELGLLGATIKGYGCAGLSSVAYGLIAREVERVDS   88 (386)
T ss_pred             cccCCCHHHHHHHHHHHHHHHHhcCccHHHHHHhCCCCHHHHHHHHHCCCCccCccccCCCCCCHHHHHHHHHHHHhhCh
Confidence            78889999999999999999999999988888888899999999999999999889999999999999999999999999


Q ss_pred             cchHHHHhhhhHHHHHHhccCCHHHHHhhchhhhcCCceEEEEeeCCCCCCCcCCCceEEEEeCCEEEEeeeEeeecCCC
Q 026317          131 SCSTFILVHSSLAMLTIALCGSEEQKQKYLPSLAQLNTIACWALTEPAYGSDASALNTTATKVEGGWILEGQKRWIGNST  210 (240)
Q Consensus       131 ~~~~~~~~~~~~~~~~l~~~g~~~~~~~~l~~l~~G~~~~~~a~tEp~~Gsd~~~~~t~a~~~~~g~~LnG~K~~vs~~~  210 (240)
                      ++++++.+|..++...+..+|+++|+++|++++++|+.++|+++|||++|||+..+.|+|++++|||+|||+|.||||+.
T Consensus        89 s~~~~~~~~~~~~~~~l~~~g~~~~~~~~l~~l~~G~~~~~~a~tEp~~Gsd~~~~~t~A~~~~~g~~lnG~K~~is~~~  168 (386)
T cd01151          89 GYRSFMSVQSSLVMLPIYDFGSEEQKQKYLPKLASGELIGCFGLTEPNHGSDPGGMETRARKDGGGYKLNGSKTWITNSP  168 (386)
T ss_pred             hHHHHHHHHHhHHHHHHHHhCCHHHHHHHHHHHhCCCeEEEEEecCCCCCCChhhCeEEEEEECCEEEEEEEEEeecCCC
Confidence            98877767765666678889999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCCEEEEEEEeCCCCCeeEEEEeCCc
Q 026317          211 FADVLVIFARNTTTNQINGYANQSIK  236 (240)
Q Consensus       211 ~Ad~~~v~a~~~~~~~~~~flVp~~~  236 (240)
                      .|||++|.|++++++++++|+||++.
T Consensus       169 ~Ad~~lv~ar~~~~~~~~~flVp~~~  194 (386)
T cd01151         169 IADVFVVWARNDETGKIRGFILERGM  194 (386)
T ss_pred             cCCEEEEEEEECCCCcEEEEEEcCCC
Confidence            99999999998766678999999874

Glutaryl-CoA dehydrogenase (GCD). GCD is an acyl-CoA dehydrogenase, which catalyzes the oxidative decarboxylation of glutaryl-CoA to crotonyl-CoA and carbon dioxide in the catabolism of lysine, hydroxylysine, and tryptophan. It uses electron transfer flavoprotein (ETF) as an electron acceptor. GCD is a homotetramer. GCD deficiency leads to a severe neurological disorder in humans.

>PRK09463 fadE acyl-CoA dehydrogenase; Reviewed

Probab=100.00  E-value=2e-36  Score=283.02  Aligned_cols=201  Identities=26%  Similarity=0.282  Sum_probs=169.4

Q ss_pred             ccccccCCCcccccccCCCCCCCCCCCCCCCCcccCCCCCCHHHHHHHHH-HHHHHHhhccccHHHHHHhCCCCHHHHHH
Q 026317           16 ARSSYFNLPALDISVAFPQATPASKFPPCASDYYQFDDLLTSEEQAVRMK-VRECMEKEIAPIMAEYWEKAEFPFHVIPK   94 (240)
Q Consensus        16 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~m~~~l~~~~~~l~~~-~~~~~~~~~~~~~~~~d~~~~~~~~~~~~   94 (240)
                      ++++|.|+|+|+.+.++|++.                  +++|++++++. +++|+.. + ....+.++.+.+|+++|++
T Consensus        58 ~~~lF~G~~~~~~l~~~p~~~------------------Ls~ee~~~~d~~v~~l~~~-~-~~~~~~~~~~~~P~e~w~~  117 (777)
T PRK09463         58 EGELFSGKPDWKKLLNYPKPT------------------LTAEEQAFLDGPVEELCRM-V-NDWQITHELADLPPEVWQF  117 (777)
T ss_pred             hhhhcCCCCChHHhcCCCCCC------------------CCHHHHHHHHHHHHHHHHH-H-HHHHHhccccCCCHHHHHH
Confidence            788999999999999888764                  57889999886 7776552 2 1112222347899999999


Q ss_pred             HHhcCcCCC-ccccCCCCCCCHHHHHHHHHHHHccCCcchHHHHhhhhHHH-HHHhccCCHHHHHhhchhhhcCCceEEE
Q 026317           95 LGALRVAGG-TIKGYGCPGHSVTGAAIAIAEIARVDASCSTFILVHSSLAM-LTIALCGSEEQKQKYLPSLAQLNTIACW  172 (240)
Q Consensus        95 l~~~Gl~~l-~p~~~GG~g~~~~~~~~v~e~la~~~~~~~~~~~~~~~~~~-~~l~~~g~~~~~~~~l~~l~~G~~~~~~  172 (240)
                      |++.||+++ +|++|||.|++..+++.++|++++.|.+++..+.+|++++. .+|..+|+++||++|||++++|+.++|+
T Consensus       118 L~e~G~~gl~IPeeyGG~Gls~~~~a~v~eeLg~~~~s~a~~~~v~~slg~~~lL~~~GteeQK~~yLp~La~Ge~i~af  197 (777)
T PRK09463        118 IKEHGFFGMIIPKEYGGLEFSAYAHSRVLQKLASRSGTLAVTVMVPNSLGPGELLLHYGTDEQKDHYLPRLARGEEIPCF  197 (777)
T ss_pred             HHHCCCCcCCCchhhCCCCCCHHHHHHHHHHHHhhCcchhHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHhCCCceeEE
Confidence            999999999 99999999999999999999999999887776777776664 4788999999999999999999999999


Q ss_pred             EeeCCCCCCCcCCCceEE-----EEeCC---EEEEeeeEeeecCCCCCCEEEEEEEe-CC--------CCCeeEEEEeCC
Q 026317          173 ALTEPAYGSDASALNTTA-----TKVEG---GWILEGQKRWIGNSTFADVLVIFARN-TT--------TNQINGYANQSI  235 (240)
Q Consensus       173 a~tEp~~Gsd~~~~~t~a-----~~~~~---g~~LnG~K~~vs~~~~Ad~~~v~a~~-~~--------~~~~~~flVp~~  235 (240)
                      ++|||++|||+..++|++     .++++   ||+|||+|.||||+..||+++|++++ ++        +.++++|+||++
T Consensus       198 AlTEP~aGSDaa~i~Tta~~~~a~~dGd~~~g~vLNG~K~~IT~a~~Ad~l~V~ar~~dp~~~~g~~~~~Git~fLVp~d  277 (777)
T PRK09463        198 ALTSPEAGSDAGSIPDTGVVCKGEWQGEEVLGMRLTWNKRYITLAPIATVLGLAFKLYDPDGLLGDKEDLGITCALIPTD  277 (777)
T ss_pred             EecCCCcCCCcccccccceeeeeeecCCcccceEEEEEEEeeCCCCccCEEEEEEEecCcccccCCCCCCceEEEEEECC
Confidence            999999999999887654     34555   69999999999999999999999985 21        247999999975


Q ss_pred             c
Q 026317          236 K  236 (240)
Q Consensus       236 ~  236 (240)
                      .
T Consensus       278 ~  278 (777)
T PRK09463        278 T  278 (777)
T ss_pred             C
Confidence            3

>PRK03354 crotonobetainyl-CoA dehydrogenase; Validated

Probab=100.00  E-value=2.8e-35  Score=259.57  Aligned_cols=186  Identities=23%  Similarity=0.242  Sum_probs=165.2

Q ss_pred             CCCCCCHHHHHHHHHHHHHHHhhc-cccHHHHHHhCCCCHHHHHHHHhcCcCCC-ccccCCCCCCCHHHHHHHHHHHHcc
Q 026317           51 FDDLLTSEEQAVRMKVRECMEKEI-APIMAEYWEKAEFPFHVIPKLGALRVAGG-TIKGYGCPGHSVTGAAIAIAEIARV  128 (240)
Q Consensus        51 m~~~l~~~~~~l~~~~~~~~~~~~-~~~~~~~d~~~~~~~~~~~~l~~~Gl~~l-~p~~~GG~g~~~~~~~~v~e~la~~  128 (240)
                      |++.+|++++++++.+|+|+++++ .+...+.|+.+.+|.++|++|++.||+++ +|++|||.|+++.+++.++++++++
T Consensus         1 m~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~d~~~~~p~~~~~~l~~~Gl~~~~vP~~~GG~g~~~~~~~~~~~~la~~   80 (380)
T PRK03354          1 MDFNLNDEQELFVAGIRELMASENWEAYFAECDRDSVYPERFVKALADMGIDSLLIPEEHGGLDAGFVTLAAVWMELGRL   80 (380)
T ss_pred             CCCCCCHHHHHHHHHHHHHHHhccCChhHHHHHhhCCCCHHHHHHHHHCCCCccCCChhhCCCCCCHHHHHHHHHHHHhc
Confidence            567799999999999999999875 56667778888999999999999999999 9999999999999999999999999


Q ss_pred             CCcchHHHHhhhhHHHHHHhccCCHHHHHhhchhhhcCCceEEEEeeCCCCCCCcCCCceEEEEeCCEEEEeeeEeeecC
Q 026317          129 DASCSTFILVHSSLAMLTIALCGSEEQKQKYLPSLAQLNTIACWALTEPAYGSDASALNTTATKVEGGWILEGQKRWIGN  208 (240)
Q Consensus       129 ~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~l~~l~~G~~~~~~a~tEp~~Gsd~~~~~t~a~~~~~g~~LnG~K~~vs~  208 (240)
                      |+++++++.++.  ....+..+|+++||++||+++++|+.+.|+++|||+.|||...+.|+|++++|||+|||+|.||||
T Consensus        81 ~~s~~~~~~~~~--~~~~l~~~g~~e~~~~~l~~~~~g~~~~~~a~tE~~~gs~~~~~~t~a~~~~~g~~lnG~K~fis~  158 (380)
T PRK03354         81 GAPTYVLYQLPG--GFNTFLREGTQEQIDKIMAFRGTGKQMWNSAITEPGAGSDVGSLKTTYTRRNGKVYLNGSKCFITS  158 (380)
T ss_pred             CcchHHHHHhcc--cHHHHHHhCCHHHHHHHHHHHhCCCeeEEEEecCCCCCCchhhCEEEEEEeCCEEEEeeEEEEEcC
Confidence            998776554442  345678889999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCCCCEEEEEEEeCCC---CCeeEEEEeCCcee
Q 026317          209 STFADVLVIFARNTTT---NQINGYANQSIKFV  238 (240)
Q Consensus       209 ~~~Ad~~~v~a~~~~~---~~~~~flVp~~~~~  238 (240)
                      +.+|||++|.|+++.+   .++++|+||+++..
T Consensus       159 ~~~ad~~~v~a~~~~~~~~~~~~~~lv~~~~~g  191 (380)
T PRK03354        159 SAYTPYIVVMARDGASPDKPVYTEWFVDMSKPG  191 (380)
T ss_pred             CCcCCEEEEEEEcCCCCCCCceeEEEEECCCCc
Confidence            9999999999997422   34788999986543

>PRK13026 acyl-CoA dehydrogenase; Reviewed

Probab=100.00  E-value=2.6e-35  Score=274.68  Aligned_cols=201  Identities=26%  Similarity=0.284  Sum_probs=166.8

Q ss_pred             ccccccCCCcccccccCCCCCCCCCCCCCCCCcccCCCCCCHHHHHHHH-HHHHHHHhhccccHHHHHHhCCCCHHHHHH
Q 026317           16 ARSSYFNLPALDISVAFPQATPASKFPPCASDYYQFDDLLTSEEQAVRM-KVRECMEKEIAPIMAEYWEKAEFPFHVIPK   94 (240)
Q Consensus        16 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~m~~~l~~~~~~l~~-~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~   94 (240)
                      +.++|.|+|+|+.+.++|++.                  +++|++.+.+ .++.++. .+.+ ....++.+.+|+++|++
T Consensus        57 ~~~lf~G~~~~~~l~~~p~~~------------------l~~eeq~fl~~~v~~l~~-~~~e-~~~~~~~~~~P~evw~~  116 (774)
T PRK13026         57 EGELFSGKPDWQKLHSYPKPT------------------LTAEEQAFIDNEVETLLT-MLDD-WDIVQNRKDLPPEVWDY  116 (774)
T ss_pred             hhhhcCCCCChhhcCCCCccc------------------cCHHHHHHHHHHHHHHHh-hhhh-hhhhhhhcCCCHHHHHH
Confidence            678999999999998877764                  4566665554 5677554 2222 23335678999999999


Q ss_pred             HHhcCcCCC-ccccCCCCCCCHHHHHHHHHHHHccCCcchHHHHhhhhHH-HHHHhccCCHHHHHhhchhhhcCCceEEE
Q 026317           95 LGALRVAGG-TIKGYGCPGHSVTGAAIAIAEIARVDASCSTFILVHSSLA-MLTIALCGSEEQKQKYLPSLAQLNTIACW  172 (240)
Q Consensus        95 l~~~Gl~~l-~p~~~GG~g~~~~~~~~v~e~la~~~~~~~~~~~~~~~~~-~~~l~~~g~~~~~~~~l~~l~~G~~~~~~  172 (240)
                      |++.||+++ +|++|||.|++..+++.++|++++.+.+.+..+.+|++++ ..+|..+|+++||++|||++++|+.++|+
T Consensus       117 Lae~Gl~gl~IPeeyGGlG~s~~~~a~V~eela~~~~s~a~~~~v~~slg~~~lL~~~GTeEQK~~yLP~LAsGe~i~af  196 (774)
T PRK13026        117 LKKEGFFALIIPKEYGGKGFSAYANSTIVSKIATRSVSAAVTVMVPNSLGPGELLTHYGTQEQKDYWLPRLADGTEIPCF  196 (774)
T ss_pred             HHHCCCCcCCCChhhCCCCCCHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHhCCHHHHHhhhHHHhCCCeEEEE
Confidence            999999999 9999999999999999999999998888777666776665 35788999999999999999999999999


Q ss_pred             EeeCCCCCCCcCCCceEEE-----EeCC---EEEEeeeEeeecCCCCCCEEEEEEEe-CC--------CCCeeEEEEeCC
Q 026317          173 ALTEPAYGSDASALNTTAT-----KVEG---GWILEGQKRWIGNSTFADVLVIFARN-TT--------TNQINGYANQSI  235 (240)
Q Consensus       173 a~tEp~~Gsd~~~~~t~a~-----~~~~---g~~LnG~K~~vs~~~~Ad~~~v~a~~-~~--------~~~~~~flVp~~  235 (240)
                      ++|||++|||+.+++|+++     ++++   ||+|||+|.||||+..||+++|.+++ ++        ..++++|+||++
T Consensus       197 AlTEP~aGSDaasi~Ttav~t~a~~dGd~~~gwvLNG~K~~IT~A~~Ad~~~v~ar~~dpd~~~g~~~~~GiT~fLVp~d  276 (774)
T PRK13026        197 ALTGPEAGSDAGAIPDTGIVCRGEFEGEEVLGLRLTWDKRYITLAPVATVLGLAFKLRDPDGLLGDKKELGITCALIPTD  276 (774)
T ss_pred             EecCCCCCCchhcccceeeeeeeeecCCccccEEEEEEEEeecCccccCEEEEEEEeeCccccccCCCCCceEEEEEECC
Confidence            9999999999999887654     4666   69999999999999999999888764 22        247999999986


Q ss_pred             c
Q 026317          236 K  236 (240)
Q Consensus       236 ~  236 (240)
                      .
T Consensus       277 ~  277 (774)
T PRK13026        277 H  277 (774)
T ss_pred             C
Confidence            3

>TIGR03203 pimD_small pimeloyl-CoA dehydrogenase, small subunit

Probab=100.00  E-value=6.1e-35  Score=257.13  Aligned_cols=182  Identities=20%  Similarity=0.185  Sum_probs=159.7

Q ss_pred             CCCCHHHHHHHHHHHHHHHhhccccHHH--HHHhCCCCHHHHHHHHhcCcCCC-ccccCCCCCCCHHHHHHHHHHHHccC
Q 026317           53 DLLTSEEQAVRMKVRECMEKEIAPIMAE--YWEKAEFPFHVIPKLGALRVAGG-TIKGYGCPGHSVTGAAIAIAEIARVD  129 (240)
Q Consensus        53 ~~l~~~~~~l~~~~~~~~~~~~~~~~~~--~d~~~~~~~~~~~~l~~~Gl~~l-~p~~~GG~g~~~~~~~~v~e~la~~~  129 (240)
                      +.++++++++++.+++|+++.+.+...+  .|+.+.+|.++|++|.+.||+++ +|++|||.|+++.+.+.++|++++.+
T Consensus         2 ~~~~~eq~~l~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~l~e~G~~~l~vPe~~GG~G~~~~~~~~v~eel~~~~   81 (378)
T TIGR03203         2 FDLSEEQRLLKESVEGLLKTSYDFDSRKKYQKEKGGWSKAVWGKLAEQGLLGLPFSEADGGFGAGSVETMIVMEALGKAL   81 (378)
T ss_pred             CCCCHHHHHHHHHHHHHHHhhCCHHHHHHHHhccCCCCHHHHHHHHHCCCcccccchhcCCCCCCHHHHHHHHHHHhCcc
Confidence            4578999999999999999988765543  45667899999999999999999 99999999999999999999999987


Q ss_pred             CcchHHHHhhhhHHHHHHhccCCHHHHHhhchhhhcCCceEEEEeeCCCCCCCcCCCceEEEEeCCEEEEeeeEeeecCC
Q 026317          130 ASCSTFILVHSSLAMLTIALCGSEEQKQKYLPSLAQLNTIACWALTEPAYGSDASALNTTATKVEGGWILEGQKRWIGNS  209 (240)
Q Consensus       130 ~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~l~~l~~G~~~~~~a~tEp~~Gsd~~~~~t~a~~~~~g~~LnG~K~~vs~~  209 (240)
                      .+.+. +. +..++..++..+|+++||++|||++++|+.+.++++|||++|||...++|+|++++|+|+|||+|.||||+
T Consensus        82 ~~~~~-~~-~~~~~~~~l~~~g~~~qk~~~L~~l~~G~~~~a~a~tEp~~gsd~~~~~t~a~~~g~~~~l~G~K~~vt~a  159 (378)
T TIGR03203        82 VLEPY-LA-TVVIGGGFLRHAGSAAQKAAHLPGIIDGSKTFAFAQLEKNSRYDLGDVSTTAKKTGDGWVIDGEKFVVLNG  159 (378)
T ss_pred             cchHH-HH-HHHHHHHHHHHcCCHHHHHHHHHHHhCCChhheeeecCCCCCCCcccceEEEEEcCCEEEEEeEEEEecCC
Confidence            65442 22 22244567888999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCCCEEEEEEEeCC----CCCeeEEEEeCCc
Q 026317          210 TFADVLVIFARNTT----TNQINGYANQSIK  236 (240)
Q Consensus       210 ~~Ad~~~v~a~~~~----~~~~~~flVp~~~  236 (240)
                      ..||+++|+|++++    .+++++|+||++.
T Consensus       160 ~~Ad~~lv~ar~~~~~~~~~g~~~flV~~~~  190 (378)
T TIGR03203       160 ETADTLIVTARTKGARRDRTGIGVFLVPAGA  190 (378)
T ss_pred             ccCCEEEEEEecCCCCCCCCceEEEEEECCC
Confidence            99999999999742    2578999999864

Members of this protein family are the PimD proteins of species such as Rhodopseudomonas palustris, Bradyrhizobium japonicum. The pimFABCDE operon encodes proteins for the metabolism of straight chain dicarboxylates of seven to fourteen carbons. Especially relevant is pimeloyl-CoA, basis of the gene symbol, as it is a catabolite of benzoyl-CoA degradation, which occurs in Rhodopseudomonas palustris.

>PRK12341 putative acyl-CoA dehydrogenase; Provisional

Probab=100.00  E-value=1.2e-34  Score=255.64  Aligned_cols=184  Identities=22%  Similarity=0.269  Sum_probs=163.6

Q ss_pred             CCCCCCHHHHHHHHHHHHHHHhhcc-ccHHHHHHhCCCCHHHHHHHHhcCcCCC-ccccCCCCCCCHHHHHHHHHHHHcc
Q 026317           51 FDDLLTSEEQAVRMKVRECMEKEIA-PIMAEYWEKAEFPFHVIPKLGALRVAGG-TIKGYGCPGHSVTGAAIAIAEIARV  128 (240)
Q Consensus        51 m~~~l~~~~~~l~~~~~~~~~~~~~-~~~~~~d~~~~~~~~~~~~l~~~Gl~~l-~p~~~GG~g~~~~~~~~v~e~la~~  128 (240)
                      |+|.++++++++++.+++|+.+.+. +.+.+.|+.+.+|.++|++|++.||+++ +|++|||.|+++.+++.++|++++.
T Consensus         1 m~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~p~~~~~~l~~~Gl~~~~vP~~~GG~g~~~~~~~~~~e~la~~   80 (381)
T PRK12341          1 MDFSLTEEQELLLASIRELITRNFPEEYFRTCDENGTYPREFMRALADNGISMLGVPEEFGGTPADYVTQMLVLEEVSKC   80 (381)
T ss_pred             CCCCCCHHHHHHHHHHHHHHHHhcCchhHHHHHHhCCCCHHHHHHHHHCCCCCcCCChhhCCCCcCHHHHHHHHHHHhhc
Confidence            6778999999999999999999886 4667778888999999999999999999 9999999999999999999999999


Q ss_pred             CCcchHHHHhhhhHHHHHHhccCCHHHHHhhchhh-hcCCceEEEEeeCCCCCCCcCCCceEEEEeCCEEEEeeeEeeec
Q 026317          129 DASCSTFILVHSSLAMLTIALCGSEEQKQKYLPSL-AQLNTIACWALTEPAYGSDASALNTTATKVEGGWILEGQKRWIG  207 (240)
Q Consensus       129 ~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~l~~l-~~G~~~~~~a~tEp~~Gsd~~~~~t~a~~~~~g~~LnG~K~~vs  207 (240)
                      |.+ .+.+  ++.++...+..+|+++||++|++++ .+|+.++++++|||+.|||...++|+|++++|||+|||+|+|||
T Consensus        81 ~~~-~~~~--~~~~~~~~l~~~g~~~q~~~~l~~~~~~g~~~~~~a~tEp~~gsd~~~~~t~a~~~~gg~~lnG~K~~is  157 (381)
T PRK12341         81 GAP-AFLI--TNGQCIHSMRRFGSAEQLRKTAESTLETGDPAYALALTEPGAGSDNNSATTTYTRKNGKVYLNGQKTFIT  157 (381)
T ss_pred             Chh-HHHH--hhhhhHHHHHHhCCHHHHHHHhHHHhhCCCeEEEEEecCCCCCCchhhCeeEEEEeCCEEEEEeEEEEEc
Confidence            987 3333  3334555678899999999999998 59998899999999999999999999999999999999999999


Q ss_pred             CCCCCCEEEEEEEeCCC----CCeeEEEEeCCce
Q 026317          208 NSTFADVLVIFARNTTT----NQINGYANQSIKF  237 (240)
Q Consensus       208 ~~~~Ad~~~v~a~~~~~----~~~~~flVp~~~~  237 (240)
                      |+..||+++|.|+++++    .++++|+||+++-
T Consensus       158 ~~~~Ad~~~v~a~~~~~~~~~~~~~~~lV~~~~~  191 (381)
T PRK12341        158 GAKEYPYMLVLARDPQPKDPKKAFTLWWVDSSKP  191 (381)
T ss_pred             CCccCCEEEEEEEcCCCCCCCCceEEEEEeCCCC
Confidence            99999999999997532    3588999998753

>cd01161 VLCAD Very long chain acyl-CoA dehydrogenase

Probab=100.00  E-value=8.8e-35  Score=258.73  Aligned_cols=202  Identities=28%  Similarity=0.386  Sum_probs=176.0

Q ss_pred             ccccccCCCcccccccCCCCCCCCCCCCCCCCcccCCCCCCHHHHHHHHHHHHHHHhhccccHHHHHHhCCCCHHHHHHH
Q 026317           16 ARSSYFNLPALDISVAFPQATPASKFPPCASDYYQFDDLLTSEEQAVRMKVRECMEKEIAPIMAEYWEKAEFPFHVIPKL   95 (240)
Q Consensus        16 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~m~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~l   95 (240)
                      .++.|+|..+.+.+.+||.             +  |++.++++++++++.+++|+++.+.|.  ++++.+.+|.++|++|
T Consensus         3 ~~~~~~~~~~~~~~~~~~~-------------~--~~~~~~~~~~~l~~~~~~~~~~~~~~~--~~d~~~~~~~~~~~~l   65 (409)
T cd01161           3 ALNMFLGDIVTKQVFPYPS-------------V--LTEEQTEELNMLVGPVEKFFEEVNDPA--KNDQLEKIPRKTLTQL   65 (409)
T ss_pred             hhHhhcCCcchhhcCCCcc-------------c--cCccCCHHHHHHHHHHHHHHHHhCCch--hhccccCCCHHHHHHH
Confidence            3567788887777776653             2  555688999999999999999998875  3466778999999999


Q ss_pred             HhcCcCCC-ccccCCCCCCCHHHHHHHHHHHHccCCcchHHHHhhhhHHHHHHhccCCHHHHHhhchhhhcCCceEEEEe
Q 026317           96 GALRVAGG-TIKGYGCPGHSVTGAAIAIAEIARVDASCSTFILVHSSLAMLTIALCGSEEQKQKYLPSLAQLNTIACWAL  174 (240)
Q Consensus        96 ~~~Gl~~l-~p~~~GG~g~~~~~~~~v~e~la~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~l~~l~~G~~~~~~a~  174 (240)
                      ++.||+++ +|++|||.|+++.++..++|++++ |+++++.+.+|..++...+..+|+++|+++|++++++|+.++|+++
T Consensus        66 ~~~Gl~~l~vP~~~GG~g~~~~~~~~v~e~l~~-~~~~~~~~~~~~~~~~~~l~~~g~~~q~~~~l~~l~~G~~~~~~a~  144 (409)
T cd01161          66 KELGLFGLQVPEEYGGLGLNNTQYARLAEIVGM-DLGFSVTLGAHQSIGFKGILLFGTEAQKEKYLPKLASGEWIAAFAL  144 (409)
T ss_pred             HhCCCCCCCCChhhCCCCCCHHHHHHHHHHHhh-ChHHHHHHHHhhhhhHHHHHHcCCHHHHHHHhHHHhCCCeeEEEEe
Confidence            99999999 999999999999999999999999 9988887777765555567789999999999999999999999999


Q ss_pred             eCCCCCCCcCCCceEEEEe--CCEEEEeeeEeeecCCCCCCEEEEEEEeCC-------CCCeeEEEEeCC
Q 026317          175 TEPAYGSDASALNTTATKV--EGGWILEGQKRWIGNSTFADVLVIFARNTT-------TNQINGYANQSI  235 (240)
Q Consensus       175 tEp~~Gsd~~~~~t~a~~~--~~g~~LnG~K~~vs~~~~Ad~~~v~a~~~~-------~~~~~~flVp~~  235 (240)
                      |||++|||...+.|+|+++  ++||+|||+|.||||+..||+++|.|+++.       .+++++|+||++
T Consensus       145 tEp~~Gs~~~~~~t~a~~~~~g~g~~l~G~K~~vs~~~~Ad~~lv~ar~~~~~~~g~~~~~~~~flvp~~  214 (409)
T cd01161         145 TEPSSGSDAASIRTTAVLSEDGKHYVLNGSKIWITNGGIADIFTVFAKTEVKDATGSVKDKITAFIVERS  214 (409)
T ss_pred             cCCCCCCChhhCeeEEEEcCCCCEEEEEeEEEeecCCCcCCEEEEEEEcCCCCCCCCCCCceEEEEEeCC
Confidence            9999999999999999984  557999999999999999999999999751       146889999987

VLCAD is an acyl-CoA dehydrogenase (ACAD), which is found in the mitochondria of eukaryotes and in some bacteria. It catalyzes the alpha,beta dehydrogenation of the corresponding trans-enoyl-CoA by FAD, which becomes reduced. The reduced form of ACAD is reoxidized in the oxidative half-reaction by electron-transferring flavoprotein (ETF), from which the electrons are transferred to the mitochondrial respiratory chain coupled with ATP synthesis. VLCAD acts as a homodimer.

>PLN02519 isovaleryl-CoA dehydrogenase

Probab=100.00  E-value=1.2e-34  Score=257.48  Aligned_cols=185  Identities=27%  Similarity=0.434  Sum_probs=169.5

Q ss_pred             CCCCCCHHHHHHHHHHHHHHHhhccccHHHHHHhCCCCHH--HHHHHHhcCcCCC-ccccCCCCCCCHHHHHHHHHHHHc
Q 026317           51 FDDLLTSEEQAVRMKVRECMEKEIAPIMAEYWEKAEFPFH--VIPKLGALRVAGG-TIKGYGCPGHSVTGAAIAIAEIAR  127 (240)
Q Consensus        51 m~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~d~~~~~~~~--~~~~l~~~Gl~~l-~p~~~GG~g~~~~~~~~v~e~la~  127 (240)
                      .||.+++++.++++.+++|+++.+.|.+.+.|+.+.+|.+  +|++|++.||+++ +|++|||.|+++.+++.++|++++
T Consensus        22 ~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~d~~~~~p~~~~~~~~l~~~G~~~~~vP~e~GG~g~~~~~~~~v~e~la~  101 (404)
T PLN02519         22 SSLLFDDTQLQFKESVQQFAQENIAPHAAAIDATNSFPKDVNLWKLMGDFNLHGITAPEEYGGLGLGYLYHCIAMEEISR  101 (404)
T ss_pred             CCCCCCHHHHHHHHHHHHHHHHhCCcchHHHHhcCCCCchHHHHHHHHHCCCCcccCChhhCCCCCCHHHHHHHHHHHhh
Confidence            3566899999999999999999999998888888888876  6999999999999 999999999999999999999999


Q ss_pred             cCCcchHHHHhhhhHHHHHHhccCCHHHHHhhchhhhcCCceEEEEeeCCCCCCCcCCCceEEEEeCCEEEEeeeEeeec
Q 026317          128 VDASCSTFILVHSSLAMLTIALCGSEEQKQKYLPSLAQLNTIACWALTEPAYGSDASALNTTATKVEGGWILEGQKRWIG  207 (240)
Q Consensus       128 ~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~l~~l~~G~~~~~~a~tEp~~Gsd~~~~~t~a~~~~~g~~LnG~K~~vs  207 (240)
                      .|+++++++.+|..++...+..+|+++||++|+|++++|+.++|+++|||++|||...+.|+|++++|||+|||+|.|+|
T Consensus       102 ~~~s~a~~~~~~~~~~~~~l~~~g~~~q~~~~l~~l~~G~~~~~~a~sEp~~gsd~~~~~t~a~~~~~g~~lnG~K~~vs  181 (404)
T PLN02519        102 ASGSVGLSYGAHSNLCINQLVRNGTPAQKEKYLPKLISGEHVGALAMSEPNSGSDVVSMKCKAERVDGGYVLNGNKMWCT  181 (404)
T ss_pred             hcccHHHHHHhhhhhHHHHHHHhCCHHHHHHHHHHHhCCCeeEEEEecCCCcCCCcccceEEEEEeCCEEEEEeEEEeec
Confidence            99999988777766566678889999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCCCCCEEEEEEEeCCC---CCeeEEEEeCC
Q 026317          208 NSTFADVLVIFARNTTT---NQINGYANQSI  235 (240)
Q Consensus       208 ~~~~Ad~~~v~a~~~~~---~~~~~flVp~~  235 (240)
                      |+..||+++|.|+++++   .++++|+||++
T Consensus       182 ~a~~ad~~~v~a~~~~~~~~~~~~~~lVp~~  212 (404)
T PLN02519        182 NGPVAQTLVVYAKTDVAAGSKGITAFIIEKG  212 (404)
T ss_pred             CCCcCCEEEEEEEeCCCCCCCeeEEEEEeCC
Confidence            99999999999997532   35889999985

>cd01156 IVD Isovaleryl-CoA dehydrogenase

Probab=100.00  E-value=1.8e-34  Score=253.90  Aligned_cols=182  Identities=34%  Similarity=0.484  Sum_probs=167.6

Q ss_pred             CCHHHHHHHHHHHHHHHhhccccHHHHHHhCCCCHHHHHHHHhcCcCCC-ccccCCCCCCCHHHHHHHHHHHHccCCcch
Q 026317           55 LTSEEQAVRMKVRECMEKEIAPIMAEYWEKAEFPFHVIPKLGALRVAGG-TIKGYGCPGHSVTGAAIAIAEIARVDASCS  133 (240)
Q Consensus        55 l~~~~~~l~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~l~~~Gl~~l-~p~~~GG~g~~~~~~~~v~e~la~~~~~~~  133 (240)
                      ++++++++++.+++|+.+.+.|.+.+.|+.+.+|.++|+.|++.||+++ +|++|||.|+++.+++.+++++++.|++++
T Consensus         2 ~~~~~~~l~~~~~~~~~~~~~~~a~~~d~~~~~~~~~~~~l~~~Gl~~~~vP~e~GG~g~~~~~~~~~~e~la~~~~~~~   81 (376)
T cd01156           2 LDDEIEMLRQSVREFAQKEIAPLAAKIDRDNEFPRDLWRKMGKLGLLGITAPEEYGGSGMGYLAHVIIMEEISRASGSVA   81 (376)
T ss_pred             CCHHHHHHHHHHHHHHHHhcCcchHHHHhhCCCCHHHHHHHHhCCCCcccCCHhhCCCCCCHHHHHHHHHHHhccchhHH
Confidence            5688999999999999999999888888888899999999999999999 999999999999999999999999999998


Q ss_pred             HHHHhhhhHHHHHHhccCCHHHHHhhchhhhcCCceEEEEeeCCCCCCCcCCCceEEEEeCCEEEEeeeEeeecCCCCCC
Q 026317          134 TFILVHSSLAMLTIALCGSEEQKQKYLPSLAQLNTIACWALTEPAYGSDASALNTTATKVEGGWILEGQKRWIGNSTFAD  213 (240)
Q Consensus       134 ~~~~~~~~~~~~~l~~~g~~~~~~~~l~~l~~G~~~~~~a~tEp~~Gsd~~~~~t~a~~~~~g~~LnG~K~~vs~~~~Ad  213 (240)
                      +.+..|..++...|..+|+++|+++|++++++|+.++++++|||.+|||...++|+|++++|||+|||+|.||||+..||
T Consensus        82 ~~~~~~~~~~~~~l~~~g~~~~~~~~l~~l~~G~~~~~~a~sEp~~gs~~~~~~t~a~~~~~g~~l~G~k~~vs~~~~a~  161 (376)
T cd01156          82 LSYGAHSNLCINQIYRNGSAAQKEKYLPKLISGEHIGALAMSEPNAGSDVVSMKLRAEKKGDRYVLNGSKMWITNGPDAD  161 (376)
T ss_pred             HHHHHhhhhHHHHHHHhCCHHHHHHHHHHHhCCCeeEEEEecCCCCCCChhhCeEEEEEeCCEEEEEEEEEEecCCCcCC
Confidence            87766755556678899999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             EEEEEEEeCCC---CCeeEEEEeCCc
Q 026317          214 VLVIFARNTTT---NQINGYANQSIK  236 (240)
Q Consensus       214 ~~~v~a~~~~~---~~~~~flVp~~~  236 (240)
                      +++|.|+++++   .++++|+||+++
T Consensus       162 ~~lv~a~~~~~~~~~~~~~~lv~~~~  187 (376)
T cd01156         162 TLVVYAKTDPSAGAHGITAFIVEKGM  187 (376)
T ss_pred             EEEEEEEeCCCCCCCceEEEEEcCCC
Confidence            99999997533   468899999876

Isovaleryl-CoA dehydrogenase (IVD) is an is an acyl-CoA dehydrogenase, which catalyzes the third step in leucine catabolism, the conversion of isovaleryl-CoA (3-methylbutyryl-CoA) into 3-methylcrotonyl-CoA. IVD is a homotetramer and has the greatest affinity for small branched chain substrates.

>cd01157 MCAD Medium chain acyl-CoA dehydrogenase

Probab=100.00  E-value=1.5e-34  Score=254.67  Aligned_cols=181  Identities=27%  Similarity=0.439  Sum_probs=163.4

Q ss_pred             CCHHHHHHHHHHHHHHHhhccccHHHHHHhCCCCHHHHHHHHhcCcCCC-ccccCCCCCCCHHHHHHHHHHHHccCCcch
Q 026317           55 LTSEEQAVRMKVRECMEKEIAPIMAEYWEKAEFPFHVIPKLGALRVAGG-TIKGYGCPGHSVTGAAIAIAEIARVDASCS  133 (240)
Q Consensus        55 l~~~~~~l~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~l~~~Gl~~l-~p~~~GG~g~~~~~~~~v~e~la~~~~~~~  133 (240)
                      ++++++++++.+++|+++.+.|.+.+.|+.+.+|.++|++|.+.||+++ +|++|||.|+++.+++.++|++++.|++++
T Consensus         1 ~~~~~~~l~~~~~~~~~~~~~~~~~~~d~~~~~p~~~~~~l~~~G~~~~~vP~~~GG~g~~~~~~~~v~e~l~~~~~~~~   80 (378)
T cd01157           1 LTEQQKEFQETARKFAREEIIPVAAEYDKSGEYPWPLIKRAWELGLMNTHIPEDCGGLGLGTFDTCLITEELAYGCTGVQ   80 (378)
T ss_pred             CCHHHHHHHHHHHHHHHHhcccchHHHHhhCCCCHHHHHHHHhCCCCCcCCChhhCCCCCCHHHHHHHHHHHHhhhhHHH
Confidence            3678899999999999999999888888888999999999999999999 999999999999999999999999999877


Q ss_pred             HHHHhhhhHHHHHHhccCCHHHHHhhchhhhcCCceEEEEeeCCCCCCCcCCCceEEEEeCCEEEEeeeEeeecCCCCCC
Q 026317          134 TFILVHSSLAMLTIALCGSEEQKQKYLPSLAQLNTIACWALTEPAYGSDASALNTTATKVEGGWILEGQKRWIGNSTFAD  213 (240)
Q Consensus       134 ~~~~~~~~~~~~~l~~~g~~~~~~~~l~~l~~G~~~~~~a~tEp~~Gsd~~~~~t~a~~~~~g~~LnG~K~~vs~~~~Ad  213 (240)
                      +.+..+ .++...+..+|+++||++||+++++|+.++++++|||+.|||...+.|+|++++|||+|||+|.||||+..||
T Consensus        81 ~~~~~~-~~~~~~l~~~g~~~q~~~~l~~~~~G~~~~~~a~tEp~~gs~~~~~~t~a~~~~~g~~l~G~k~~vs~~~~ad  159 (378)
T cd01157          81 TAIEAN-SLGQMPVIISGNDEQKKKYLGRMTEEPLMCAYCVTEPGAGSDVAGIKTKAEKKGDEYIINGQKMWITNGGKAN  159 (378)
T ss_pred             HHHHhh-hhhHHHHHHhCCHHHHHHHHHHHhCCCeeEEEEecCCCCCCchhcCeEEEEEcCCEEEEeeEEEeecCCccCC
Confidence            655444 3455566678999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             EEEEEEEeCCC------CCeeEEEEeCCc
Q 026317          214 VLVIFARNTTT------NQINGYANQSIK  236 (240)
Q Consensus       214 ~~~v~a~~~~~------~~~~~flVp~~~  236 (240)
                      |++|.++++++      .++++|+||+++
T Consensus       160 ~~lv~a~~~~~~~~~~~~~~~~~lv~~~~  188 (378)
T cd01157         160 WYFLLARSDPDPKCPASKAFTGFIVEADT  188 (378)
T ss_pred             EEEEEEEeCCcccCCCCCceEEEEEcCCC
Confidence            99999997532      357899999876

MCADs are mitochondrial beta-oxidation enzymes, which catalyze the alpha,beta dehydrogenation of the corresponding medium chain acyl-CoA by FAD, which becomes reduced. The reduced form of MCAD is reoxidized in the oxidative half-reaction by electron-transferring flavoprotein (ETF), from which the electrons are transferred to the mitochondrial respiratory chain coupled with ATP synthesis. MCAD is a homotetramer.

>TIGR03207 cyc_hxne_CoA_dh cyclohexanecarboxyl-CoA dehydrogenase

Probab=100.00  E-value=3.8e-34  Score=251.67  Aligned_cols=182  Identities=26%  Similarity=0.286  Sum_probs=164.7

Q ss_pred             CCHHHHHHHHHHHHHHHhhccccHHHHHHhCCCCHHHHHHHHhcCcCCC-ccccCCCCCCCHHHHHHHHHHHHccCCcch
Q 026317           55 LTSEEQAVRMKVRECMEKEIAPIMAEYWEKAEFPFHVIPKLGALRVAGG-TIKGYGCPGHSVTGAAIAIAEIARVDASCS  133 (240)
Q Consensus        55 l~~~~~~l~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~l~~~Gl~~l-~p~~~GG~g~~~~~~~~v~e~la~~~~~~~  133 (240)
                      ++++++++++.+++|+.+.+.|.+.+.|+.+.+|.++|++|.+.||+++ +|++|||.|+++.+++.++|++++.|++++
T Consensus         1 ~t~~~~~l~~~~~~~~~~~~~p~~~~~d~~~~~~~~~~~~l~~~G~~~l~vP~~~GG~g~~~~~~~~~~e~la~~~~s~~   80 (372)
T TIGR03207         1 LNEDLQALADTARRFARERIAPGFKERDKTRVLDRELMRDMGEMGFIGPELPEEHGGLGMGCLAAGVIHEQIARADLSMS   80 (372)
T ss_pred             CCHHHHHHHHHHHHHHHHhcCcchHHHHhhCCCCHHHHHHHHHCCCCcccCChhHCCCCCCHHHHHHHHHHHHhhCccHH
Confidence            4678899999999999999999988888888999999999999999999 999999999999999999999999999987


Q ss_pred             HHHHhhhhHHHHHHhccCCHHHHHhhchhhhcCCceEEEEeeCCCCCCCcCCCceEEEEeCCEEEEeeeEeeecCCCCCC
Q 026317          134 TFILVHSSLAMLTIALCGSEEQKQKYLPSLAQLNTIACWALTEPAYGSDASALNTTATKVEGGWILEGQKRWIGNSTFAD  213 (240)
Q Consensus       134 ~~~~~~~~~~~~~l~~~g~~~~~~~~l~~l~~G~~~~~~a~tEp~~Gsd~~~~~t~a~~~~~g~~LnG~K~~vs~~~~Ad  213 (240)
                      ++...+ .++...+..+|+++|+++||+++++|+.++++++|||+.|||...+.|+|++++|||+|||+|.||||+..||
T Consensus        81 ~~~~~~-~~~~~~l~~~g~~~~~~~~l~~~~~G~~~~~~a~tEp~~Gsd~~~~~t~a~~~~~g~~lnG~k~~vs~~~~ad  159 (372)
T TIGR03207        81 YVNLLA-SLNGQILAQHARPEIAKPWLGQLIAGEALFAIALTEPRGGSDAARLRLRAERDGDDYVLNGEKTSISAADQAD  159 (372)
T ss_pred             HHHHhh-hHHHHHHHHhCCHHHHHHHHHHHhCCCeeEEEEecCCCCCcChhhCEEEEEEeCCEEEEEEEEEEEcCCCcCC
Confidence            654333 3455678889999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             EEEEEEEeCC----CCCeeEEEEeCCce
Q 026317          214 VLVIFARNTT----TNQINGYANQSIKF  237 (240)
Q Consensus       214 ~~~v~a~~~~----~~~~~~flVp~~~~  237 (240)
                      +++|++++++    ..++++|+||+++-
T Consensus       160 ~~lv~a~~~~~~~~~~~~~~~lVp~~~~  187 (372)
T TIGR03207       160 AAVVFARTGSEAEGARGISAFLVPMDLP  187 (372)
T ss_pred             EEEEEEEcCCCCCCCCceEEEEEcCCCC
Confidence            9999999753    23688999998753

Cyclohex-1-ene-1carboxyl-CoA is an intermediate in the anaerobic degradation of benzoyl-CoA derived from varioius aromatic compounds, in Rhodopseudomonas palustris but not Thauera aromatica. The aliphatic compound cyclohexanecarboxylate, can be converted to the same intermediate in two steps. The first step is its ligation to coenzyme A. The second is the action of this enzyme, cyclohexanecarboxyl-CoA dehydrogenase.

>PTZ00461 isovaleryl-CoA dehydrogenase; Provisional

Probab=100.00  E-value=3.8e-34  Score=254.73  Aligned_cols=182  Identities=26%  Similarity=0.360  Sum_probs=166.0

Q ss_pred             CCCCHHHHHHHHHHHHHHHhhccccHHHHHHhCCCCHHHHHHHHhcCcCCC-ccccCCCCCCCHHHHHHHHHHHHccCCc
Q 026317           53 DLLTSEEQAVRMKVRECMEKEIAPIMAEYWEKAEFPFHVIPKLGALRVAGG-TIKGYGCPGHSVTGAAIAIAEIARVDAS  131 (240)
Q Consensus        53 ~~l~~~~~~l~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~l~~~Gl~~l-~p~~~GG~g~~~~~~~~v~e~la~~~~~  131 (240)
                      +.++++++++++.+++|+.+.+.|.+.+.|+.+.+|.++|++|++.||+++ +|++|||.|+++.+.+.++|+++++|++
T Consensus        35 ~~~~~~~~~l~~~~~~~~~~~~~~~a~~~d~~~~~~~~~~~~l~~~Gl~~l~vP~~~GG~g~~~~~~~~~~e~la~~~~s  114 (410)
T PTZ00461         35 YNPTPEHAALRETVAKFSREVVDKHAREDDINMHFNRDLFKQLGDLGVMGVTVPEADGGAGMDAVAAVIIHHELSKYDPG  114 (410)
T ss_pred             CCCCHHHHHHHHHHHHHHHHhCCccHHHHhhhCCCCHHHHHHHHHCCCCcccCChhhCCCCCCHHHHHHHHHHHHhhCch
Confidence            578999999999999999999999988888888999999999999999999 9999999999999999999999999988


Q ss_pred             chHHHHhhhhHHHHHHhccCCHHHHHhhchhhhcCCceEEEEeeCCCCCCCcCCCceEEEEeCC-EEEEeeeEeeecCCC
Q 026317          132 CSTFILVHSSLAMLTIALCGSEEQKQKYLPSLAQLNTIACWALTEPAYGSDASALNTTATKVEG-GWILEGQKRWIGNST  210 (240)
Q Consensus       132 ~~~~~~~~~~~~~~~l~~~g~~~~~~~~l~~l~~G~~~~~~a~tEp~~Gsd~~~~~t~a~~~~~-g~~LnG~K~~vs~~~  210 (240)
                      +++.+.+|..+....+..+|+++||++|++++++|+.++|+++|||++|||...+.|+|+++++ ||+|||+|.||||+.
T Consensus       115 ~~~~~~~~~~~~~~~l~~~g~~~qk~~~l~~~~~G~~~~~~a~tEp~~Gsd~~~~~t~a~~~~~gg~~L~G~K~~vs~a~  194 (410)
T PTZ00461        115 FCLAYLAHSMLFVNNFYYSASPAQRARWLPKVLTGEHVGAMGMSEPGAGTDVLGMRTTAKKDSNGNYVLNGSKIWITNGT  194 (410)
T ss_pred             HHHHHHhhhhHHHHHHHHhCCHHHHHHHHHHHhCCCeeEEEEecCCCCCCChHHCeEEEEEcCCCeEEEEeEEEeECCCc
Confidence            7766656654455677889999999999999999999999999999999999999999999764 799999999999999


Q ss_pred             CCCEEEEEEEeCCCCCeeEEEEeCCc
Q 026317          211 FADVLVIFARNTTTNQINGYANQSIK  236 (240)
Q Consensus       211 ~Ad~~~v~a~~~~~~~~~~flVp~~~  236 (240)
                      .||+++|.|+++  +++++|+||++.
T Consensus       195 ~Ad~~lv~a~~~--~~~~~flVp~~~  218 (410)
T PTZ00461        195 VADVFLIYAKVD--GKITAFVVERGT  218 (410)
T ss_pred             cCCEEEEEEEeC--CceEEEEEeCCC
Confidence            999999999975  458899999873

>TIGR03204 pimC_large pimeloyl-CoA dehydrogenase, large subunit

Probab=100.00  E-value=3.5e-34  Score=253.74  Aligned_cols=183  Identities=26%  Similarity=0.306  Sum_probs=158.9

Q ss_pred             CCCCCHHHHHHHHHHHHHHHhhccccHHHHH-HhCCCCH----HHHHHHHhcCcCCC-ccccCCCCCCCHHHHHHHHHHH
Q 026317           52 DDLLTSEEQAVRMKVRECMEKEIAPIMAEYW-EKAEFPF----HVIPKLGALRVAGG-TIKGYGCPGHSVTGAAIAIAEI  125 (240)
Q Consensus        52 ~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~d-~~~~~~~----~~~~~l~~~Gl~~l-~p~~~GG~g~~~~~~~~v~e~l  125 (240)
                      |+.++++++++++.+++|+.+.+.|...+.+ +...+|.    ++|++|.++||+++ +|++|||.|+++.+++.++|++
T Consensus         1 ~~~lteeq~~l~~~~r~f~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~l~e~G~~gl~vPe~~GG~G~~~~~~~~v~eel   80 (395)
T TIGR03204         1 DLAFSKEEQAFRDEVRSFFKDNVPADTRQKLVEGRHLTKDEMVTWWRILNKKGWGVSHWPKQYGGTGWTSVQHYIFNEEL   80 (395)
T ss_pred             CCCCCHHHHHHHHHHHHHHHHhCChhhhhhhhccCCCChHHHHHHHHHHHhCCCCCCCCCcccCCCCCCHHHHHHHHHHH
Confidence            3568999999999999999999887765432 3334664    89999999999999 9999999999999999999999


Q ss_pred             HccCCcchHHHHhhhhHHHHHHhccCCHHHHHhhchhhhcCCceEEEEeeCCCCCCCcCCCceEEEEeCCEEEEeeeEee
Q 026317          126 ARVDASCSTFILVHSSLAMLTIALCGSEEQKQKYLPSLAQLNTIACWALTEPAYGSDASALNTTATKVEGGWILEGQKRW  205 (240)
Q Consensus       126 a~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~l~~l~~G~~~~~~a~tEp~~Gsd~~~~~t~a~~~~~g~~LnG~K~~  205 (240)
                      ++++.+.++...++  ++...+..+|+++||++|||++++|+.+.++++|||++|||...+.|+|++++++|+|||+|.|
T Consensus        81 g~~~~~~~~~~~~~--~~~~~l~~~g~~~q~~~~L~~i~~G~~~~~~a~tEp~~gsd~~~~~t~a~~~g~~~~LnG~K~~  158 (395)
T TIGR03204        81 QSAPAPQPLAFGVS--MVGPVIYTFGNEEQKKRFLPRIANVDDWWCQGFSEPGSGSDLASLKTKAEKKGDKWIINGQKTW  158 (395)
T ss_pred             HhcCCCccchhHhH--hhHHHHHHhCCHHHHHHHHHHHhCCchheEeEecCCCCCCChhhceEEEEEcCCEEEEeeEEEe
Confidence            99998877543322  3344678889999999999999999999999999999999999999999999999999999999


Q ss_pred             ecCCCCCCEEEEEEEeCC----CCCeeEEEEeCCc
Q 026317          206 IGNSTFADVLVIFARNTT----TNQINGYANQSIK  236 (240)
Q Consensus       206 vs~~~~Ad~~~v~a~~~~----~~~~~~flVp~~~  236 (240)
                      |+|+..||+++|.|++++    ..++++|+||++.
T Consensus       159 vt~a~~Ad~~lv~a~~~~~~~~~~g~~~flV~~~~  193 (395)
T TIGR03204       159 TTLAQHADWIFCLCRTDPTAKKQMGISFILVDMKS  193 (395)
T ss_pred             ecCCccCCeEEEEEEeCCCCCCCCCeEEEEEeCCC
Confidence            999999999999999753    2468999999863

Members of this protein family are the PimC proteins of species such as Rhodopseudomonas palustris and Bradyrhizobium japonicum. The pimFABCDE operon encodes proteins for the metabolism of straight chain dicarboxylates of seven to fourteen carbons. Especially relevant is pimeloyl-CoA, basis of the gene symbol, as it is a catabolite of benzoyl-CoA degradation, which occurs in Rhodopseudomonas palustris.

>cd01160 LCAD Long chain acyl-CoA dehydrogenase

Probab=100.00  E-value=5.5e-34  Score=250.57  Aligned_cols=178  Identities=32%  Similarity=0.430  Sum_probs=161.9

Q ss_pred             HHHHHHHHHHHHHHhhccccHHHHHHhCCCCHHHHHHHHhcCcCCC-ccccCCCCCCCHHHHHHHHHHHHccCCcchHHH
Q 026317           58 EEQAVRMKVRECMEKEIAPIMAEYWEKAEFPFHVIPKLGALRVAGG-TIKGYGCPGHSVTGAAIAIAEIARVDASCSTFI  136 (240)
Q Consensus        58 ~~~~l~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~l~~~Gl~~l-~p~~~GG~g~~~~~~~~v~e~la~~~~~~~~~~  136 (240)
                      +++++++.+++|+.+.+.|.+.+.|+.+.+|+++|++|++.||+++ +|++|||.|+++.+++.++|++++.+.+ ++.+
T Consensus         2 ~~~~l~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~l~~~G~~~~~vP~~~GG~g~~~~~~~~~~e~la~~~~~-~~~~   80 (372)
T cd01160           2 EHDAFRDVVRRFFAKEVAPFHHEWEKAGEVPREVWRKAGEQGLLGVGFPEEYGGIGGDLLSAAVLWEELARAGGS-GPGL   80 (372)
T ss_pred             hHHHHHHHHHHHHHHhCchhHHHHHhhCCCCHHHHHHHHhCCCCCCCCCHHHCCCCCCHHHHHHHHHHHHHhcch-HHHH
Confidence            5789999999999999999888888888999999999999999999 9999999999999999999999996655 6666


Q ss_pred             HhhhhHHHHHHhccCCHHHHHhhchhhhcCCceEEEEeeCCCCCCCcCCCceEEEEeCCEEEEeeeEeeecCCCCCCEEE
Q 026317          137 LVHSSLAMLTIALCGSEEQKQKYLPSLAQLNTIACWALTEPAYGSDASALNTTATKVEGGWILEGQKRWIGNSTFADVLV  216 (240)
Q Consensus       137 ~~~~~~~~~~l~~~g~~~~~~~~l~~l~~G~~~~~~a~tEp~~Gsd~~~~~t~a~~~~~g~~LnG~K~~vs~~~~Ad~~~  216 (240)
                      .+|..++...+..+|+++|+++|++++++|+.++|+++|||.+|||...+.|+++++++||+|||+|.||||+..||+++
T Consensus        81 ~~~~~~~~~~l~~~g~~~~~~~~l~~~~~g~~~~~~a~tE~~~gsd~~~~~t~a~~~~~g~~l~G~k~~vs~~~~Ad~~~  160 (372)
T cd01160          81 SLHTDIVSPYITRAGSPEQKERVLPQMVAGKKIGAIAMTEPGAGSDLQGIRTTARKDGDHYVLNGSKTFITNGMLADVVI  160 (372)
T ss_pred             HHHHHHHHHHHHHhCCHHHHHHHHHHHhCCCeeEEEEecCCCCCCchhhCeEEEEEeCCEEEEeeEEEEecCCCccCEEE
Confidence            66654566678889999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             EEEEeCCC----CCeeEEEEeCCc
Q 026317          217 IFARNTTT----NQINGYANQSIK  236 (240)
Q Consensus       217 v~a~~~~~----~~~~~flVp~~~  236 (240)
                      |.|+++++    .++++|+||++.
T Consensus       161 v~a~~~~~~~~~~~~~~~lv~~~~  184 (372)
T cd01160         161 VVARTGGEARGAGGISLFLVERGT  184 (372)
T ss_pred             EEEEeCCCCCCCCceEEEEEeCCC
Confidence            99997533    468999999875

LCAD is an acyl-CoA dehydrogenases (ACAD), which is found in the mitochondria of eukaryotes and in some prokaryotes. It catalyzes the alpha, beta dehydrogenation of the corresponding trans-enoyl-CoA by FAD, which becomes reduced. The reduced form of LCAD is reoxidized in the oxidative half-reaction by electron-transferring flavoprotein (ETF), from which the electrons are transferred to the mitochondrial respiratory chain coupled with ATP synthesis. LCAD acts as a homodimer.

>cd01162 IBD Isobutyryl-CoA dehydrogenase

Probab=100.00  E-value=7.7e-34  Score=249.99  Aligned_cols=181  Identities=30%  Similarity=0.476  Sum_probs=166.5

Q ss_pred             CCHHHHHHHHHHHHHHHhhccccHHHHHHhCCCCHHHHHHHHhcCcCCC-ccccCCCCCCCHHHHHHHHHHHHccCCcch
Q 026317           55 LTSEEQAVRMKVRECMEKEIAPIMAEYWEKAEFPFHVIPKLGALRVAGG-TIKGYGCPGHSVTGAAIAIAEIARVDASCS  133 (240)
Q Consensus        55 l~~~~~~l~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~l~~~Gl~~l-~p~~~GG~g~~~~~~~~v~e~la~~~~~~~  133 (240)
                      ++++++++++.+++|+.+.+.|.+.+.|..+.+|.++|++|++.||+++ +|++|||.|+++.+.+.++++++++|++++
T Consensus         1 ~~~~~~~l~~~~~~~~~~~~~~~a~~~d~~~~~p~~~~~~l~~~Gl~~~~vP~~~GG~g~~~~~~~~~~~~l~~~~~~~~   80 (375)
T cd01162           1 LNEEQRAIQEVARAFAAKEMAPHAADWDQKKHFPVDVLRKAAELGFGGIYIRDDVGGSGLSRLDASIIFEALSTGCVSTA   80 (375)
T ss_pred             CCHHHHHHHHHHHHHHHHhCCcchhhHHhhCCCCHHHHHHHHHCCCCCcCCCHhhCCCCCCHHHHHHHHHHHHhhchhHH
Confidence            4678899999999999999999988888889999999999999999999 999999999999999999999999999988


Q ss_pred             HHHHhhhhHHHHHHhccCCHHHHHhhchhhhcCCceEEEEeeCCCCCCCcCCCceEEEEeCCEEEEeeeEeeecCCCCCC
Q 026317          134 TFILVHSSLAMLTIALCGSEEQKQKYLPSLAQLNTIACWALTEPAYGSDASALNTTATKVEGGWILEGQKRWIGNSTFAD  213 (240)
Q Consensus       134 ~~~~~~~~~~~~~l~~~g~~~~~~~~l~~l~~G~~~~~~a~tEp~~Gsd~~~~~t~a~~~~~g~~LnG~K~~vs~~~~Ad  213 (240)
                      +++.+|. ++...+..+|+++|+++|++++++|+.++++++|||.+|||...+.|+++++++||+|||+|.||||+..||
T Consensus        81 ~~~~~~~-~~~~~l~~~g~~~q~~~~l~~l~~g~~~~~~a~tE~~~gsd~~~~~t~a~~~~~g~~l~G~k~~vs~~~~ad  159 (375)
T cd01162          81 AYISIHN-MCAWMIDSFGNDEQRERFLPDLCTMEKLASYCLTEPGSGSDAAALRTRAVREGDHYVLNGSKAFISGAGDSD  159 (375)
T ss_pred             HHHHHhh-hHHHHHHHhCCHHHHHHHHHHHhCCCceeEEEecCCCCCCChhhCEEEEEEeCCEEEEEEEEEEecCCCCCC
Confidence            7777664 456678889999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             EEEEEEEeCCC--CCeeEEEEeCCc
Q 026317          214 VLVIFARNTTT--NQINGYANQSIK  236 (240)
Q Consensus       214 ~~~v~a~~~~~--~~~~~flVp~~~  236 (240)
                      +++|.|+++++  .++++|+||++.
T Consensus       160 ~~~v~a~~~~~~~~~~~~~lv~~~~  184 (375)
T cd01162         160 VYVVMARTGGEGPKGISCFVVEKGT  184 (375)
T ss_pred             EEEEEEEecCCCCCceEEEEEeCCC
Confidence            99999997532  468899999876

Isobutyryl-CoA dehydrogenase (IBD) catalyzes the alpha, beta- dehydrogenation of short branched chain acyl-CoA intermediates in valine catabolism. It is predicted to be a homotetramer.

>cd01158 SCAD_SBCAD Short chain acyl-CoA dehydrogenases and eukaryotic short/branched chain acyl-CoA dehydrogenases

Probab=100.00  E-value=8.8e-33  Score=242.89  Aligned_cols=182  Identities=42%  Similarity=0.601  Sum_probs=166.9

Q ss_pred             HHHHHHHHHHHHHHhhccccHHHHHHhCCCCHHHHHHHHhcCcCCC-ccccCCCCCCCHHHHHHHHHHHHccCCcchHHH
Q 026317           58 EEQAVRMKVRECMEKEIAPIMAEYWEKAEFPFHVIPKLGALRVAGG-TIKGYGCPGHSVTGAAIAIAEIARVDASCSTFI  136 (240)
Q Consensus        58 ~~~~l~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~l~~~Gl~~l-~p~~~GG~g~~~~~~~~v~e~la~~~~~~~~~~  136 (240)
                      ++.++++.+++|+.+.+.+.+.+.|+.+.+|.+.|++|++.||+++ +|++|||.|.++.+++.++++++++|+++++++
T Consensus         2 ~~~~~~~~~~~~~~~~~~~~a~~~d~~~~~~~~~~~~l~~~Gl~~l~vP~e~GG~g~~~~~~~~v~~~l~~~~~s~~~~~   81 (373)
T cd01158           2 EHQMIRKTVRDFAEKEIAPLAAEMDEKGEFPREVIKEMAELGLMGIPIPEEYGGAGLDFLAYAIAIEELAKVDASVAVIV   81 (373)
T ss_pred             hHHHHHHHHHHHHHHhcccchHHHhhcCCCCHHHHHHHHhCCCCcccCCHHHCCCCCCHHHHHHHHHHHHhhCccHHHHH
Confidence            4789999999999998988888888888899999999999999999 999999999999999999999999999999888


Q ss_pred             HhhhhHHHHHHhccCCHHHHHhhchhhhcCCceEEEEeeCCCCCCCcCCCceEEEEeCCEEEEeeeEeeecCCCCCCEEE
Q 026317          137 LVHSSLAMLTIALCGSEEQKQKYLPSLAQLNTIACWALTEPAYGSDASALNTTATKVEGGWILEGQKRWIGNSTFADVLV  216 (240)
Q Consensus       137 ~~~~~~~~~~l~~~g~~~~~~~~l~~l~~G~~~~~~a~tEp~~Gsd~~~~~t~a~~~~~g~~LnG~K~~vs~~~~Ad~~~  216 (240)
                      .+|..++...+..+++++|+++|++++++|+.++++++|||.+|||...+.++++++++||+|||+|.|+||+.+|||++
T Consensus        82 ~~~~~~~~~~l~~~~~~~~~~~~l~~~~~G~~~~~~a~se~~~gs~~~~~~~~a~~~~~g~~l~G~k~~vsg~~~ad~~l  161 (373)
T cd01158          82 SVHNSLGANPIIKFGTEEQKKKYLPPLATGEKIGAFALSEPGAGSDAAALKTTAKKDGDDYVLNGSKMWITNGGEADFYI  161 (373)
T ss_pred             HHHHhHHHHHHHHhCCHHHHHHHHHHHhCCCeEEEEEecCCCCCCCHHHCEeEEEEeCCEEEEeeEEEEEcCCCcCCEEE
Confidence            88865666778889999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             EEEEeCCC---CCeeEEEEeCCc--eec
Q 026317          217 IFARNTTT---NQINGYANQSIK--FVL  239 (240)
Q Consensus       217 v~a~~~~~---~~~~~flVp~~~--~~~  239 (240)
                      |.++++++   .++++|+||+++  ++|
T Consensus       162 v~a~~~~~~~~~~~~~~lvp~~~~gv~i  189 (373)
T cd01158         162 VFAVTDPSKGYRGITAFIVERDTPGLSV  189 (373)
T ss_pred             EEEEcCCCCCCCceEEEEEcCCCCCeec
Confidence            99997533   358899999877  554

Short chain acyl-CoA dehydrogenase (SCAD). SCAD is a mitochondrial beta-oxidation enzyme. It catalyzes the alpha,beta dehydrogenation of the corresponding trans-enoyl-CoA by FAD, which becomes reduced. The reduced form of SCAD is reoxidized in the oxidative half-reaction by electron-transferring flavoprotein (ETF), from which the electrons are transferred to the mitochondrial respiratory chain coupled with ATP synthesis. This subgroup also contains the eukaryotic short/branched chain acyl-CoA dehydrogenase(SBCAD), the bacterial butyryl-CoA dehydorgenase(BCAD) and 2-methylbutyryl-CoA dehydrogenase, which is involved in isoleucine catabolism. These enzymes are homotetramers.

>cd01152 ACAD_fadE6_17_26 Putative acyl-CoA dehydrogenases similar to fadE6, fadE17, and fadE26

Probab=99.98  E-value=8.4e-32  Score=237.47  Aligned_cols=177  Identities=29%  Similarity=0.365  Sum_probs=155.9

Q ss_pred             HHHHHHHHHHHHHHhhccccHHHH-----HHhCCCCHHHHHHHHhcCcCCC-ccccCCCCCCCHHHHHHHHHHHHccCCc
Q 026317           58 EEQAVRMKVRECMEKEIAPIMAEY-----WEKAEFPFHVIPKLGALRVAGG-TIKGYGCPGHSVTGAAIAIAEIARVDAS  131 (240)
Q Consensus        58 ~~~~l~~~~~~~~~~~~~~~~~~~-----d~~~~~~~~~~~~l~~~Gl~~l-~p~~~GG~g~~~~~~~~v~e~la~~~~~  131 (240)
                      +++++++.+++|+++++.|.....     ++.+.+|.+++++|++.||+++ +|++|||.|.++.+++.++|++++.|++
T Consensus         2 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gl~~l~vP~~~GG~g~~~~~~~~~~e~l~~~~~~   81 (380)
T cd01152           2 SEEAFRAEVRAWLAAHLPPELREESALGYREGREDRRRWQRALAAAGWAAPGWPKEYGGRGASLMEQLIFREEMAAAGAP   81 (380)
T ss_pred             cHHHHHHHHHHHHHhcCCccccccccccccccchHHHHHHHHHHhCCCCccCCChhhCCCCCCHHHHHHHHHHHHhcCCC
Confidence            477999999999999998876532     3446688999999999999999 9999999999999999999999999998


Q ss_pred             chHH-HHhhhhHHHHHHhccCCHHHHHhhchhhhcCCceEEEEeeCCCCCCCcCCCceEEEEeCCEEEEeeeEeeecCCC
Q 026317          132 CSTF-ILVHSSLAMLTIALCGSEEQKQKYLPSLAQLNTIACWALTEPAYGSDASALNTTATKVEGGWILEGQKRWIGNST  210 (240)
Q Consensus       132 ~~~~-~~~~~~~~~~~l~~~g~~~~~~~~l~~l~~G~~~~~~a~tEp~~Gsd~~~~~t~a~~~~~g~~LnG~K~~vs~~~  210 (240)
                      +++. +.++  ++...+..+|+++|+++||+++++|+.+.++++|||+.|||...+.|+++++++||+|||+|.||||+.
T Consensus        82 ~~~~~~~~~--~~~~~l~~~g~~~~~~~~l~~~~~g~~~~~~a~tE~~~gsd~~~~~t~a~~~~~g~~L~G~K~~it~~~  159 (380)
T cd01152          82 VPFNQIGID--LAGPTILAYGTDEQKRRFLPPILSGEEIWCQGFSEPGAGSDLAGLRTRAVRDGDDWVVNGQKIWTSGAH  159 (380)
T ss_pred             cccchhhHH--HHHHHHHHhCCHHHHHHHhHHHhCCchhheeecCCCCCCcchhhCeeeEEEcCCeEEEecEEEEEcCcc
Confidence            8865 3322  344568889999999999999999998899999999999999999999999999999999999999999


Q ss_pred             CCCEEEEEEEeCCC----CCeeEEEEeCCc
Q 026317          211 FADVLVIFARNTTT----NQINGYANQSIK  236 (240)
Q Consensus       211 ~Ad~~~v~a~~~~~----~~~~~flVp~~~  236 (240)
                      .||+++|.|+++++    .++++|+||++.
T Consensus       160 ~ad~~lv~a~~~~~~~~~~~~~~~lVp~~~  189 (380)
T cd01152         160 YADWAWLLVRTDPEAPKHRGISILLVDMDS  189 (380)
T ss_pred             ccCEEEEEEEeCCCccCcCCeEEEEEeCCC
Confidence            99999999997532    368899999865

Putative acyl-CoA dehydrogenases (ACAD). Mitochondrial acyl-CoA dehydrogenases (ACAD) catalyze the alpha, beta dehydrogenation of the corresponding trans-enoyl-CoA by FAD, which becomes reduced. The reduced form of ACAD is reoxidized in the oxidative half-reaction by electron-transferring flavoprotein (ETF), from which the electrons are transferred to the mitochondrial respiratory chain coupled with ATP synthesis. The ACD family includes the eukaryotic beta-oxidation, as well as amino acid catabolism enzymes. These enzymes share high sequence similarity, but differ in their substrate specificities. The mitochondrial ACD's are generally homotetramers and have an active site glutamate at a conserved position.

>cd01155 ACAD_FadE2 Acyl-CoA dehydrogenases similar to fadE2

Probab=99.98  E-value=4.5e-31  Score=233.87  Aligned_cols=181  Identities=20%  Similarity=0.216  Sum_probs=150.2

Q ss_pred             HHHHHHHHHHHHHhhccccHHHHHHh-----------CCCCHHHHHHHHhcCcCCC-ccccCCCCCCCHHHHHHHHHHHH
Q 026317           59 EQAVRMKVRECMEKEIAPIMAEYWEK-----------AEFPFHVIPKLGALRVAGG-TIKGYGCPGHSVTGAAIAIAEIA  126 (240)
Q Consensus        59 ~~~l~~~~~~~~~~~~~~~~~~~d~~-----------~~~~~~~~~~l~~~Gl~~l-~p~~~GG~g~~~~~~~~v~e~la  126 (240)
                      .+++++++|+|+++++.|...+.|+.           ..+++++|++++++||+++ +|++|||.|+++.+++.++|+++
T Consensus         3 ~~~~~~~~r~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~l~~P~~~GG~g~~~~~~~~v~e~l~   82 (394)
T cd01155           3 AQELRARVKAFMEEHVYPAEQEFLEYYAEGGDRWWTPPPIIEKLKAKAKAEGLWNLFLPEVSGLSGLTNLEYAYLAEETG   82 (394)
T ss_pred             HHHHHHHHHHHHHHhcCccHHHHHhhcccccccccCCchhHHHHHHHHHhCCCCCCCCChhhCCCCcCHHHHHHHHHHHh
Confidence            57899999999999999987777643           1233589999999999999 99999999999999999999999


Q ss_pred             ccCCc-chHHHHhhhhHHHHHHhccCCHHHHHhhchhhhcCCceEEEEeeCCC-CCCCcCCCceEEEEeCCEEEEeeeEe
Q 026317          127 RVDAS-CSTFILVHSSLAMLTIALCGSEEQKQKYLPSLAQLNTIACWALTEPA-YGSDASALNTTATKVEGGWILEGQKR  204 (240)
Q Consensus       127 ~~~~~-~~~~~~~~~~~~~~~l~~~g~~~~~~~~l~~l~~G~~~~~~a~tEp~-~Gsd~~~~~t~a~~~~~g~~LnG~K~  204 (240)
                      +++.. .++....+...+...+..+|+++|+++|++++++|+.++++++|||+ .|||...+.|+|++++|||+|||+|.
T Consensus        83 ~~~~~~~~~~~~~~~~~~~~~l~~~g~~~q~~~~l~~l~~G~~~~~~a~tE~~~~gsd~~~~~t~a~~~~~g~~LnG~k~  162 (394)
T cd01155          83 RSFFAPEVFNCQAPDTGNMEVLHRYGSEEQKKQWLEPLLDGKIRSAFAMTEPDVASSDATNIECSIERDGDDYVINGRKW  162 (394)
T ss_pred             hhcccchheeecccccccHHHHHHhCCHHHHHHHHHHHhCCCeEEEEEeCCCCCCCCchhhCEEEEEEECCEEEEEEEEE
Confidence            98643 22211122122345788899999999999999999999999999997 68999999999999999999999999


Q ss_pred             eecCCCC--CCEEEEEEEeCCC-----CCeeEEEEeCCc--eec
Q 026317          205 WIGNSTF--ADVLVIFARNTTT-----NQINGYANQSIK--FVL  239 (240)
Q Consensus       205 ~vs~~~~--Ad~~~v~a~~~~~-----~~~~~flVp~~~--~~~  239 (240)
                      ||||+.+  +|+++|.++++++     .++++|+||++.  ++|
T Consensus       163 ~vs~~~~~~a~~~~v~a~~~~~~~~~~~~~~~flVp~~~~Gv~i  206 (394)
T cd01155         163 WSSGAGDPRCKIAIVMGRTDPDGAPRHRQQSMILVPMDTPGVTI  206 (394)
T ss_pred             EEcCCCCCCCCEEEEEEEeCCCcCCCCCceEEEEEeCCCCCeEe
Confidence            9999965  8899999987532     368999999873  554

FadE2-like Acyl-CoA dehydrogenase (ACAD). Acyl-CoA dehydrogenases (ACAD) catalyze the alpha,beta dehydrogenation of the corresponding trans-enoyl-CoA by FAD, which becomes reduced. The reduced form of ACAD is reoxidized in the oxidative half-reaction by electron-transferring flavoprotein (ETF), from which the electrons are transferred to the mitochondrial respiratory chain coupled with ATP synthesis. The ACAD family includes the eukaryotic beta-oxidation, as well as amino acid catabolism enzymes. These enzymes share high sequence similarity, but differ in their substrate specificities. ACAD's are generally homotetramers and have an active site glutamate at a conserved position.

>COG1960 CaiA Acyl-CoA dehydrogenases [Lipid metabolism]

Probab=99.97  E-value=1.3e-30  Score=230.85  Aligned_cols=183  Identities=36%  Similarity=0.480  Sum_probs=159.6

Q ss_pred             CCCCHHHHHHHHHHHHHHHhhccccHHHHHH---hCCCCHHHHHHHHhcCcCCC-ccccCCCCCCCHHHHHHHHHHHHcc
Q 026317           53 DLLTSEEQAVRMKVRECMEKEIAPIMAEYWE---KAEFPFHVIPKLGALRVAGG-TIKGYGCPGHSVTGAAIAIAEIARV  128 (240)
Q Consensus        53 ~~l~~~~~~l~~~~~~~~~~~~~~~~~~~d~---~~~~~~~~~~~l~~~Gl~~l-~p~~~GG~g~~~~~~~~v~e~la~~  128 (240)
                      +.+++++.++++.+++|+.+.+.|...+.++   .+.+|.++++++.+.|++++ +|++|||.|.+..+...+.+++++.
T Consensus         3 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~l~~~G~~~~~~p~e~GG~~~~~~~~~~~~e~l~~~   82 (393)
T COG1960           3 FDLSEEQEALRAEVREFAEEELAPEAAEIDRRIEDERFPRELLRALAEAGLLGLTIPEEYGGLGLSPLEQAAVLEELARA   82 (393)
T ss_pred             CcCCHHHHHHHHHHHHHHHHhcCcchhhhhhhcccccCHHHHHHHHHhCCcccCCCChhhCCCCcchhHHHHHHHHHHhh
Confidence            3455788999999999999999888777775   57889999999999999999 9999999999999999999999999


Q ss_pred             CCcchHHHHhhhhH---HHHHHhccCCHHHHHhhchhhhcCCceEEEEeeCCCCCCCcCCCc-eEEEEeCCEEEEeeeEe
Q 026317          129 DASCSTFILVHSSL---AMLTIALCGSEEQKQKYLPSLAQLNTIACWALTEPAYGSDASALN-TTATKVEGGWILEGQKR  204 (240)
Q Consensus       129 ~~~~~~~~~~~~~~---~~~~l~~~g~~~~~~~~l~~l~~G~~~~~~a~tEp~~Gsd~~~~~-t~a~~~~~g~~LnG~K~  204 (240)
                      +++.+..+.++...   ....+..+|+++|+++|+|++++|+.++|+++|||.+|||+..+. |++++.+|+|+|||+|.
T Consensus        83 ~~~~~~~~~~~~~~~~~~~~~~~~~g~~~q~~~~l~~~~~G~~~~~~~~tEp~~Gsd~~~~~~t~a~~~~g~~~lnG~K~  162 (393)
T COG1960          83 DAGGALALGLTHGGLGALAPTILRFGTEEQKRRYLPRLASGELIGAFALTEPGAGSDLASLRTTAAVRDDGDYVLNGQKI  162 (393)
T ss_pred             CcchhhhHHHhccccccchHHHHHcCCHHHHHHhchhhhCCchhheeeccCCCCCcchhcCceeEEEecCCCEEEEeEEE
Confidence            99876655544322   223566799999999999999999999999999999999999887 77777677799999999


Q ss_pred             eecCCCCCCEEEEEEEeCCC----CCeeEEEEeCC
Q 026317          205 WIGNSTFADVLVIFARNTTT----NQINGYANQSI  235 (240)
Q Consensus       205 ~vs~~~~Ad~~~v~a~~~~~----~~~~~flVp~~  235 (240)
                      ||||+..||+++|+|++++.    +++++|+||++
T Consensus       163 ~is~~~~ad~~~v~Ar~~~~~~~~~gis~flV~~~  197 (393)
T COG1960         163 WISNAPVADWLLVLARTDPAPGKHKGISLFLVPKD  197 (393)
T ss_pred             EEcCCCCCCEEEEEEEcCCcccccCceEEEEEeCC
Confidence            99999999999999998653    47999999986

>cd01153 ACAD_fadE5 Putative acyl-CoA dehydrogenases similar to fadE5

Probab=99.97  E-value=1.7e-30  Score=231.10  Aligned_cols=171  Identities=25%  Similarity=0.304  Sum_probs=150.4

Q ss_pred             HHHHHHHHHhhccccHHHHHHhCC--------CC---HHHHHHHHhcCcCCC-ccccCCCCCCCHHHHHHHHHHHHccCC
Q 026317           63 RMKVRECMEKEIAPIMAEYWEKAE--------FP---FHVIPKLGALRVAGG-TIKGYGCPGHSVTGAAIAIAEIARVDA  130 (240)
Q Consensus        63 ~~~~~~~~~~~~~~~~~~~d~~~~--------~~---~~~~~~l~~~Gl~~l-~p~~~GG~g~~~~~~~~v~e~la~~~~  130 (240)
                      ++++++|+.+.+.|.+.+.|++..        ||   .++|++|++.||+++ +|++|||.|.++.++..+.|+++++|.
T Consensus         2 ~~~~~~~~~~~~~~~a~~~d~~~~~~~~~~~~~p~~~~e~~~~l~~~Gl~~~~vP~e~GG~g~~~~~~~~~~e~l~~~~~   81 (407)
T cd01153           2 LEEVARLAENVLAPLNADGDREGPVFDDGRVVVPPPFKEALDAFAEAGWMALGVPEEYGGQGLPITVYSALAEIFSRGDA   81 (407)
T ss_pred             hHHHHHHHHHHhhhhHHhHhccCCcccCCceEcChhHHHHHHHHHHCCCCCCCCccccCCCCCCHHHHHHHHHHHHhhhH
Confidence            578899999999998888877654        88   678999999999999 999999999999999999999999999


Q ss_pred             cchHHHHhhhhHHHHHHhccCCHHHHHhhchhhhcCCceEEEEeeCCCCCCCcCCCceEEEEe-CCEEEEeeeEeeecCC
Q 026317          131 SCSTFILVHSSLAMLTIALCGSEEQKQKYLPSLAQLNTIACWALTEPAYGSDASALNTTATKV-EGGWILEGQKRWIGNS  209 (240)
Q Consensus       131 ~~~~~~~~~~~~~~~~l~~~g~~~~~~~~l~~l~~G~~~~~~a~tEp~~Gsd~~~~~t~a~~~-~~g~~LnG~K~~vs~~  209 (240)
                      ++++++.+|.  +...+..+|+++||++|++++++|+.++|+++|||++|||...++|+++++ +|||+|||+|.|+||+
T Consensus        82 s~~~~~~~~~--~~~~l~~~g~~~~~~~~l~~i~~G~~~~~~a~tEp~~gsd~~~~~t~a~~~~~ggy~l~G~K~~is~~  159 (407)
T cd01153          82 PLMYASGTQG--AAATLLAHGTEAQREKWIPRLAEGEWTGTMCLTEPDAGSDLGALRTKAVYQADGSWRINGVKRFISAG  159 (407)
T ss_pred             HHHHHHHHhH--HHHHHHHhCCHHHHHHHHHHHhCCCeeEEEEecCCCCCCCcccceEEEEECCCCcEEEeeEEEEEeCC
Confidence            9887665542  345677789999999999999999999999999999999999999999998 5689999999999999


Q ss_pred             CCC----CEEEEEEEeCCC----CCeeEEEEeCC
Q 026317          210 TFA----DVLVIFARNTTT----NQINGYANQSI  235 (240)
Q Consensus       210 ~~A----d~~~v~a~~~~~----~~~~~flVp~~  235 (240)
                      .+|    ++++|+++++++    .++++|+||++
T Consensus       160 ~~a~~~~~~~~v~a~~~~~~~~~~~~~~flVp~~  193 (407)
T cd01153         160 EHDMSENIVHLVLARSEGAPPGVKGLSLFLVPKF  193 (407)
T ss_pred             CcccccccEEEEEEeCCCCCCCCCceEEEEEecc
Confidence            886    578889987531    36899999987

Putative acyl-CoA dehydrogenase (ACAD). Mitochondrial acyl-CoA dehydrogenases (ACAD) catalyze the alpha,beta dehydrogenation of the corresponding trans-enoyl-CoA by FAD, which becomes reduced. The reduced form of ACAD is reoxidized in the oxidative half-reaction by electron-transferring flavoprotein (ETF), from which the electrons are transferred to the mitochondrial respiratory chain coupled with ATP synthesis. The ACD family includes the eukaryotic beta-oxidation, as well as amino acid catabolism enzymes. These enzymes share high sequence similarity, but differ in their substrate specificities. The mitochondrial ACD's are generally homotetramers and have an active site glutamate at a conserved position.

>PTZ00456 acyl-CoA dehydrogenase; Provisional

Probab=99.97  E-value=1.6e-30  Score=240.26  Aligned_cols=179  Identities=21%  Similarity=0.211  Sum_probs=149.9

Q ss_pred             HHHHHHHHHHHHHHHhhccccHHHHHHhCCC---------C---HHHHHHHHhcCcCCC-ccccCCCCCCCHHHHHHHHH
Q 026317           57 SEEQAVRMKVRECMEKEIAPIMAEYWEKAEF---------P---FHVIPKLGALRVAGG-TIKGYGCPGHSVTGAAIAIA  123 (240)
Q Consensus        57 ~~~~~l~~~~~~~~~~~~~~~~~~~d~~~~~---------~---~~~~~~l~~~Gl~~l-~p~~~GG~g~~~~~~~~v~e  123 (240)
                      +...++++++++|+++.+.|...+.|+++.+         |   .+.|+++.+.||+++ +|++|||.|++......+.|
T Consensus        58 ~~~~~il~~a~~fa~~~~~p~~~~~D~~~~~~~~~g~v~~p~g~~e~~~~l~e~G~~~l~~Pee~GG~Gl~~~~~~~~~E  137 (622)
T PTZ00456         58 ELMDSLLEEASKLATQTLLPLYESSDSEGCVLLKDGNVTTPKGFKEAYQALKAGGWTGISEPEEYGGQALPLSVGFITRE  137 (622)
T ss_pred             HHHHHHHHHHHHHHHHhcccchhhHhhccCccccCCcccCChhHHHHHHHHHHcCCCCCCCCcccCCCCcCHHHHHHHHH
Confidence            4567899999999999999998888876533         5   589999999999999 99999999999875555555


Q ss_pred             HHHccCCcchHHHHhhhhHHHHHHhccCCHHHHHhhchhhhcCCceEEEEeeCCCCCCCcCCCceEEEEeCCE-EEEeee
Q 026317          124 EIARVDASCSTFILVHSSLAMLTIALCGSEEQKQKYLPSLAQLNTIACWALTEPAYGSDASALNTTATKVEGG-WILEGQ  202 (240)
Q Consensus       124 ~la~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~l~~l~~G~~~~~~a~tEp~~Gsd~~~~~t~a~~~~~g-~~LnG~  202 (240)
                      .+++++++++.+...+ ..+...|..+|+++||++|||++++|++++++++|||++|||+..++|+|++++|| |+|||+
T Consensus       138 ~~~~a~~~~~~~~~l~-~ga~~~L~~~Gs~eqk~~~Lp~l~sGe~~~t~alTEp~aGSD~~~l~T~A~~~gdG~y~L~G~  216 (622)
T PTZ00456        138 LMATANWGFSMYPGLS-IGAANTLMAWGSEEQKEQYLTKLVSGEWSGTMCLTEPQCGTDLGQVKTKAEPSADGSYKITGT  216 (622)
T ss_pred             HHHHhchHHHHHHHHH-HHHHHHHHHhCCHHHHHHHHHHHhcCChhhhhhccCCccCCCcccCeeEEEECCCCcEEEeeE
Confidence            5677777655443332 23456788999999999999999999999999999999999999999999998874 999999


Q ss_pred             EeeecCCCCC----CEEEEEEEeCC----CCCeeEEEEeCCc
Q 026317          203 KRWIGNSTFA----DVLVIFARNTT----TNQINGYANQSIK  236 (240)
Q Consensus       203 K~~vs~~~~A----d~~~v~a~~~~----~~~~~~flVp~~~  236 (240)
                      |.|||++.++    ++++|+||+++    .+++++|+||++.
T Consensus       217 K~fIt~g~~~~~~n~~~lVlAr~~~~~~g~~GiSlFlVp~~~  258 (622)
T PTZ00456        217 KIFISAGDHDLTENIVHIVLARLPNSLPTTKGLSLFLVPRHV  258 (622)
T ss_pred             EEEecCCchhhccCcEEEEEEEecCCCCCCCceEEEEEeCCC
Confidence            9999999873    67899999853    2579999999853

>PLN02636 acyl-coenzyme A oxidase

Probab=99.97  E-value=1.5e-30  Score=242.52  Aligned_cols=221  Identities=16%  Similarity=0.167  Sum_probs=180.0

Q ss_pred             chhhhhhccccccCCCcccccccCCCCCCCCCCCCCCCCcccCCCCCCHHHHHHHHHHHHHHHhhc---cccHHHHHHhC
Q 026317            9 QDDVDKNARSSYFNLPALDISVAFPQATPASKFPPCASDYYQFDDLLTSEEQAVRMKVRECMEKEI---APIMAEYWEKA   85 (240)
Q Consensus         9 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~m~~~l~~~~~~l~~~~~~~~~~~~---~~~~~~~d~~~   85 (240)
                      ...+|...+..|+......... .-.+.+-.....+.+|...|...+++++.++++.+++|+.+..   .|....+++.+
T Consensus        16 ~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~f~~~~l~~~l~~~~~~~r~~v~~~~~~~~~~~~~~~~~~~~~~   94 (686)
T PLN02636         16 IAARRIQRLSLHLSPVPLPKEE-QLSRLVCARSIKLSVNTEKLSLYMRGKHRDIQEKIYEFFNSRPDLQTPVEISKDEHR   94 (686)
T ss_pred             HHHHHHHHHHHhcCcCCCCCcc-cCCcccccccccCCCCHHHHHhhcCCcHHHHHHHHHHHHHhCccccCCchhhHHHhh
Confidence            3446677778888755433321 1111111223456666666777788888899999999998773   56666677777


Q ss_pred             CCC-HHHHHHHHhcCcCCC-ccccCCCCCCCHHHHHHHHHHHHccCCcchHHHHhhhhHHHHHHhccCCHHHHHhhchhh
Q 026317           86 EFP-FHVIPKLGALRVAGG-TIKGYGCPGHSVTGAAIAIAEIARVDASCSTFILVHSSLAMLTIALCGSEEQKQKYLPSL  163 (240)
Q Consensus        86 ~~~-~~~~~~l~~~Gl~~l-~p~~~GG~g~~~~~~~~v~e~la~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~l~~l  163 (240)
                      .++ .++++.+++.|++++ .|++      ++.++..+.|++++.+.+++..+.+|.+++...|..+||++||++|||++
T Consensus        95 e~~~~~l~~~~~~~g~~~~~~~~~------~~~~~~~~~e~l~~~d~s~~~~~~vh~~l~~~~I~~~GTeeQk~~~L~~~  168 (686)
T PLN02636         95 ELCMRQLTGLVREAGIRPMKYLVE------DPAKYFAITEAVGSVDMSLGIKLGVQYSLWGGSVINLGTKKHRDKYFDGI  168 (686)
T ss_pred             hhHHHHHHHHHHhcCccccccccC------CHHHHHHHHHHHHhhchhhHHHHHhhhhhHHHHHHHhCCHHHHHHHHHHH
Confidence            888 889999999999999 8865      68889999999999998887777888778888899999999999999999


Q ss_pred             hcCCceEEEEeeCCCCCCCcCCCceEEEEe--CCEEEEe-----eeEeeecCCCC-CCEEEEEEEeCC---------CCC
Q 026317          164 AQLNTIACWALTEPAYGSDASALNTTATKV--EGGWILE-----GQKRWIGNSTF-ADVLVIFARNTT---------TNQ  226 (240)
Q Consensus       164 ~~G~~~~~~a~tEp~~Gsd~~~~~t~a~~~--~~g~~Ln-----G~K~~vs~~~~-Ad~~~v~a~~~~---------~~~  226 (240)
                      .+|+.++|||+|||++|||+.+++|+|+++  +|+|+||     |+|+||+|+.. ||+++|+|++..         ..|
T Consensus       169 ~~ge~ig~fA~TEpghGSdv~~leTtA~~d~~~defVLntP~~~g~K~wI~na~~~ad~~vV~Arl~~~~~~~~~~~~~G  248 (686)
T PLN02636        169 DNLDYPGCFAMTELHHGSNVQGLQTTATFDPLTDEFVINTPNDGAIKWWIGNAAVHGKFATVFARLKLPTHDSKGVSDMG  248 (686)
T ss_pred             hCCChhhhhhccCCCcccCcccCeeEEEEcCCCCeEEECCCCCCeEEEeecCCcccCCEEEEEEEecCCCCCccCCCCCC
Confidence            999999999999999999999999999998  7889999     99999999975 999999999741         358


Q ss_pred             eeEEEEeCCc
Q 026317          227 INGYANQSIK  236 (240)
Q Consensus       227 ~~~flVp~~~  236 (240)
                      +++|+||.++
T Consensus       249 i~~FlVp~r~  258 (686)
T PLN02636        249 VHAFIVPIRD  258 (686)
T ss_pred             eeEEEEecCc
Confidence            9999999763

>KOG0137 consensus Very-long-chain acyl-CoA dehydrogenase [Lipid transport and metabolism]

Probab=99.97  E-value=1.3e-30  Score=229.53  Aligned_cols=181  Identities=28%  Similarity=0.378  Sum_probs=156.9

Q ss_pred             CCCHHHHHHH----HHHHHHHHhhccccHHHHHHhCCCCHHHHHHHHhcCcCCC-ccccCCCCCCCHHHHHHHHHHHHcc
Q 026317           54 LLTSEEQAVR----MKVRECMEKEIAPIMAEYWEKAEFPFHVIPKLGALRVAGG-TIKGYGCPGHSVTGAAIAIAEIARV  128 (240)
Q Consensus        54 ~l~~~~~~l~----~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~l~~~Gl~~l-~p~~~GG~g~~~~~~~~v~e~la~~  128 (240)
                      .+++|+.++.    ..+++|+.+..  ..+..|+...+++..++.|+++|++++ +|++|||.|+.+.+++++.|.++.+
T Consensus        75 v~~~e~~~~~~~~~~pl~r~f~e~~--d~~k~d~~~~~~~~t~e~l~elG~fgl~v~~e~~G~G~~ntq~arl~e~~~~~  152 (634)
T KOG0137|consen   75 VITSEQKELLEQFVLPLERFFEEVN--DSKKNDKLGKIEETTLEALRELGLFGLQVPSEFDGLGFCNTQYARLFEIVSVA  152 (634)
T ss_pred             cCcHHHHHHHHhhhhhHHHhhhccc--hhhhhhhhcccchhHHHHHHHhCceeeccCcccCccccchHHHHHHhhccccc
Confidence            3556665554    44555555433  345567888999999999999999999 9999999999999999999999999


Q ss_pred             CCcchHHHHhhhhHHHHHHhccCCHHHHHhhchhhhcCCceEEEEeeCCCCCCCcCCCceEEEEeCC--EEEEeeeEeee
Q 026317          129 DASCSTFILVHSSLAMLTIALCGSEEQKQKYLPSLAQLNTIACWALTEPAYGSDASALNTTATKVEG--GWILEGQKRWI  206 (240)
Q Consensus       129 ~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~l~~l~~G~~~~~~a~tEp~~Gsd~~~~~t~a~~~~~--g~~LnG~K~~v  206 (240)
                      |.++++.+..|.+++...|..+|+++||++|||++++|+.+++||+|||..|||+....|+|+...|  .|+|||.|.||
T Consensus       153 D~~v~~tl~ahq~i~~k~l~lyGt~~Qk~kYL~~LaSg~~~~A~altE~s~Gsdaas~~~~a~~s~dg~~y~LNG~Kiwi  232 (634)
T KOG0137|consen  153 DLNVGVTLGAHQSIGLKGLLLYGTDEQKQKYLPKLASGKLIAAFALTEPSSGSDAASGRTTATLSPDGKHYVLNGSKIWI  232 (634)
T ss_pred             cccceeeeccchhhheeeeeecCCHHHHHHHHHhhhcCCccceEEEecCCCCcccccceeeeeecCCCCeEEEcCeeEEE
Confidence            9999988888887888889999999999999999999999999999999999999999999987654  49999999999


Q ss_pred             cCCCCCCEEEEEEEeCCC-------CCeeEEEEeCCc
Q 026317          207 GNSTFADVLVIFARNTTT-------NQINGYANQSIK  236 (240)
Q Consensus       207 s~~~~Ad~~~v~a~~~~~-------~~~~~flVp~~~  236 (240)
                      +|+..||+++|+|+++.+       +++++|+|+++.
T Consensus       233 sn~g~Adif~VfAqt~~~~~~g~~k~k~T~Flver~~  269 (634)
T KOG0137|consen  233 SNGGLADIFTVFAQTEVDPADGEVKRKITAFLVERDF  269 (634)
T ss_pred             ecCccceeeeeeeccccCCCCccccCceEEEEEeccc
Confidence            999999999999998521       469999999763

>cd01163 DszC Dibenzothiophene (DBT) desulfurization enzyme C

Probab=99.97  E-value=1.8e-29  Score=222.34  Aligned_cols=166  Identities=19%  Similarity=0.224  Sum_probs=144.8

Q ss_pred             HHHHHHhhccccHHHHHHhCCCCHHHHHHHHhcCcCCC-ccccCCCCCCCHHHHHHHHHHHHccCCcchHHHHhhhhHHH
Q 026317           66 VRECMEKEIAPIMAEYWEKAEFPFHVIPKLGALRVAGG-TIKGYGCPGHSVTGAAIAIAEIARVDASCSTFILVHSSLAM  144 (240)
Q Consensus        66 ~~~~~~~~~~~~~~~~d~~~~~~~~~~~~l~~~Gl~~l-~p~~~GG~g~~~~~~~~v~e~la~~~~~~~~~~~~~~~~~~  144 (240)
                      +++++. .+.+.+.+.|+.+.+|.+.|+.|++.||+++ +|++|||.|+++.+++.++|++++.|+++++.+.+|.. ..
T Consensus         3 ~~~~~~-~~~~~a~~~d~~~~~p~~~~~~l~~~G~~~l~vP~~~GG~g~~~~~~~~~~e~la~~~~s~~~~~~~~~~-~~   80 (377)
T cd01163           3 ARPLAA-RIAEGAAERDRQRGLPYEEVALLRQSGLGTLRVPKEYGGLGASLPDLYEVVRELAAADSNIAQALRAHFG-FV   80 (377)
T ss_pred             HHHHHH-HHhhhhhhhhhcCCCCHHHHHHHHHCCCccccCchhhCCCCCCHHHHHHHHHHHHhcCcHHHHHHHHHHH-HH
Confidence            455443 5777888889999999999999999999999 99999999999999999999999999999887777753 44


Q ss_pred             HHHhccCCHHHHHhhchhhhcCCceEEEEeeCCCCCCCcCCCceEEEEeCCEEEEeeeEeeecCCCCCCEEEEEEEeCCC
Q 026317          145 LTIALCGSEEQKQKYLPSLAQLNTIACWALTEPAYGSDASALNTTATKVEGGWILEGQKRWIGNSTFADVLVIFARNTTT  224 (240)
Q Consensus       145 ~~l~~~g~~~~~~~~l~~l~~G~~~~~~a~tEp~~Gsd~~~~~t~a~~~~~g~~LnG~K~~vs~~~~Ad~~~v~a~~~~~  224 (240)
                      ..+..+|+++||++|++++++|+.+ +.++|||++|+ .....+++.+++|||+|||+|.||||+.+|||++|.+++++ 
T Consensus        81 ~~l~~~g~~~~~~~~l~~~~~g~~~-~~a~tE~~~~~-~~~~~~~~~~~~~g~~lnG~K~~is~a~~Ad~~~v~a~~~~-  157 (377)
T cd01163          81 EALLLAGPEQFRKRWFGRVLNGWIF-GNAVSERGSVR-PGTFLTATVRDGGGYVLNGKKFYSTGALFSDWVTVSALDEE-  157 (377)
T ss_pred             HHHHhcCcHHHHHHHHHHHhCCCeE-EEeecCCCCCC-CCCceEEEEecCCEEEEeceEEeecCCccceEEEEEEEcCC-
Confidence            6788899999999999999999865 46999998776 66677788888899999999999999999999999999754 


Q ss_pred             CCeeEEEEeCCc
Q 026317          225 NQINGYANQSIK  236 (240)
Q Consensus       225 ~~~~~flVp~~~  236 (240)
                      +++++|+||++.
T Consensus       158 ~~~~~~lV~~~~  169 (377)
T cd01163         158 GKLVFAAVPTDR  169 (377)
T ss_pred             CcEEEEEEeCCC
Confidence            567889999875

DszC is a flavin reductase dependent enzyme, which catalyzes the first two steps of DBT desulfurization in mesophilic bacteria. DszC converts DBT to DBT-sulfoxide, which is then converted to DBT-sulfone. Bacteria with this enzyme are candidates for the removal of organic sulfur compounds from fossil fuels, which pollute the environment. An equivalent enzyme tdsC, is found in thermophilic bacteria. This alignment also contains a closely related uncharacterized subgroup.

>PTZ00457 acyl-CoA dehydrogenase; Provisional

Probab=99.97  E-value=5.8e-29  Score=224.41  Aligned_cols=180  Identities=23%  Similarity=0.278  Sum_probs=144.5

Q ss_pred             ccccccCCCcccccccCCCCCCCCCCCCCCCCcccCCCCCCHHHHHHHHHHHHHHHhhccccHHHHHHhCCCCHHHHHHH
Q 026317           16 ARSSYFNLPALDISVAFPQATPASKFPPCASDYYQFDDLLTSEEQAVRMKVRECMEKEIAPIMAEYWEKAEFPFHVIPKL   95 (240)
Q Consensus        16 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~m~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~l   95 (240)
                      .+++|+|+.+.+.++|||.-.                  +++++.+.   ++.|+.+.-                  +.+
T Consensus        19 ~~~lF~g~~~~~~~~pyP~~~------------------~~~~~~~~---~~~~~~~~~------------------~~~   59 (520)
T PTZ00457         19 AAGLFNFKIVPEEMFPYPCRK------------------LDGDEAEN---LQSLLEQIR------------------SND   59 (520)
T ss_pred             HHHhhCcccchhhcCCCCCCC------------------CCHHHHHH---HHHHHHHHH------------------hch
Confidence            578899999999999888321                  12333322   222222210                  046


Q ss_pred             Hhc-CcCCC-ccccCCCCCCCHHHHHHHHHHHHccCCcchHHHHhhhhHHHHHHhccCCHHHHHhhchhhhcCCceEEEE
Q 026317           96 GAL-RVAGG-TIKGYGCPGHSVTGAAIAIAEIARVDASCSTFILVHSSLAMLTIALCGSEEQKQKYLPSLAQLNTIACWA  173 (240)
Q Consensus        96 ~~~-Gl~~l-~p~~~GG~g~~~~~~~~v~e~la~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~l~~l~~G~~~~~~a  173 (240)
                      +++ ||+++ +|++|||.|++..+++.++|++|+.+.+.+..+..|..++...+..+|+++||++|||++++|+.+++++
T Consensus        60 ~~l~Gl~gl~vPeeyGG~Gl~~~~~a~v~Eelgr~~~s~~l~~~~h~~l~~~~L~~~Gt~eqker~Lp~lasGe~i~A~A  139 (520)
T PTZ00457         60 KILGNLYGARIATEYGGLGLGHTAHALIYEEVGTNCDSKLLSTIQHSGFCTYLLSTVGSKELKGKYLTAMSDGTIMMGWA  139 (520)
T ss_pred             HhcCCccCCCCChhhCCCCCCHHHHHHHHHHHHhhCchHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHhCCCcEEEEE
Confidence            799 99999 9999999999999999999999998877665444565566678888999999999999999999999999


Q ss_pred             eeCCCCCCCcCCCceEEEEe-CCEEEEeeeEeeecCCCCCCEEEEEEEeCC----------CCCeeEEEEeCCc
Q 026317          174 LTEPAYGSDASALNTTATKV-EGGWILEGQKRWIGNSTFADVLVIFARNTT----------TNQINGYANQSIK  236 (240)
Q Consensus       174 ~tEp~~Gsd~~~~~t~a~~~-~~g~~LnG~K~~vs~~~~Ad~~~v~a~~~~----------~~~~~~flVp~~~  236 (240)
                      ++| ++|||+..++|+|+++ +|+|+|||+|.|+ |+..||+++|+|++++          .+++++|+||++.
T Consensus       140 ltE-~aGSD~a~i~TtA~~~~gg~wvLNG~K~~t-~g~~Ad~~lV~Art~~~~~~~~g~~~~~git~FlV~~da  211 (520)
T PTZ00457        140 TEE-GCGSDISMNTTKASLTDDGSYVLTGQKRCE-FAASATHFLVLAKTLTQTAAEEGATEVSRNSFFICAKDA  211 (520)
T ss_pred             eCC-CCCCccccceeEEEEcCCCeEEEEEEEEEE-cCchhcEEEEEeecCCcccccccccCcCceEEEEEECCC
Confidence            988 8999999999999986 5579999999966 8999999999999742          1368999999864

>PLN02876 acyl-CoA dehydrogenase

Probab=99.96  E-value=5.4e-29  Score=238.17  Aligned_cols=184  Identities=18%  Similarity=0.200  Sum_probs=153.6

Q ss_pred             CCCCHHHHHHHHHHHHHHHhhccccHHHHHHhC-------CCC-HHHHHHHH-hcCcCCC-cccc---------------
Q 026317           53 DLLTSEEQAVRMKVRECMEKEIAPIMAEYWEKA-------EFP-FHVIPKLG-ALRVAGG-TIKG---------------  107 (240)
Q Consensus        53 ~~l~~~~~~l~~~~~~~~~~~~~~~~~~~d~~~-------~~~-~~~~~~l~-~~Gl~~l-~p~~---------------  107 (240)
                      |.+|+++.++++++++|+++++.|...++++..       .+| .+.|+++. ++||+++ +|++               
T Consensus       400 ~~~s~~~~~l~~~~~~f~~~~~~p~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~G~~~~~~p~~~~~~~~~~~~~~~~~  479 (822)
T PLN02876        400 FVPSEKVLELRKKLIKFMEDHIYPMENEFYKLAQSSSRWTVHPEEERLKELAKKEGLWNLWIPLDSAARARKLLFEDNKH  479 (822)
T ss_pred             cCCCHHHHHHHHHHHHHHHHHccCccHHHHhhcccccccccCcchHHHHHHHHHcCcccCCCCchhhhhhhhcccccccc
Confidence            568999999999999999999888776655322       377 68888886 9999999 9984               


Q ss_pred             ---------CCCCCCCHHHHHHHHHHHHccCCcchHH-HHhhhhHHHHHHhccCCHHHHHhhchhhhcCCceEEEEeeCC
Q 026317          108 ---------YGCPGHSVTGAAIAIAEIARVDASCSTF-ILVHSSLAMLTIALCGSEEQKQKYLPSLAQLNTIACWALTEP  177 (240)
Q Consensus       108 ---------~GG~g~~~~~~~~v~e~la~~~~~~~~~-~~~~~~~~~~~l~~~g~~~~~~~~l~~l~~G~~~~~~a~tEp  177 (240)
                               |||.|++..+++.++|++|+++.+...+ ...+....+..|..+|+++||++||+++++|+.++|+++|||
T Consensus       480 ~~~~~~~~~~GG~G~~~~~~~~~~Eelg~~~~~~~~~~~~~~~~~~~~~l~~~gt~eqk~~~L~~l~~G~~~~~~a~tEp  559 (822)
T PLN02876        480 MVSGDSADQLLGAGLSNLEYGYLCEIMGRSVWAPQVFNCGAPDTGNMEVLLRYGNKEQQLEWLIPLLEGKIRSGFAMTEP  559 (822)
T ss_pred             cccccccccCCCCCCCHHHHHHHHHHHhccchHHHHhcccCcccccHHHHHHhCCHHHHHHHHHHHhCCCceeEEEecCC
Confidence                     9999999999999999999987553221 112212334578889999999999999999999999999999


Q ss_pred             C-CCCCcCCCceEEEEeCCEEEEeeeEeeecCC--CCCCEEEEEEEeCCC----CCeeEEEEeCCc
Q 026317          178 A-YGSDASALNTTATKVEGGWILEGQKRWIGNS--TFADVLVIFARNTTT----NQINGYANQSIK  236 (240)
Q Consensus       178 ~-~Gsd~~~~~t~a~~~~~g~~LnG~K~~vs~~--~~Ad~~~v~a~~~~~----~~~~~flVp~~~  236 (240)
                      + +|||+.++.|+|++++|||+|||+|.||||+  ..||+++|.|+++++    +++++|+||++.
T Consensus       560 ~~~gsd~~~~~t~a~~~g~g~vLnG~K~~vtga~~~~ad~~lv~ar~~~~~~~~~~~s~flV~~~~  625 (822)
T PLN02876        560 QVASSDATNIECSIRRQGDSYVINGTKWWTSGAMDPRCRVLIVMGKTDFNAPKHKQQSMILVDIQT  625 (822)
T ss_pred             CccCcccccceEEEEEcCCEEEEEeEEEEecCCCCCCCCEEEEEEecCCCCCCCCcceEEEEeCCC
Confidence            7 6899999999999999999999999999999  579999999997532    468899999753

>PLN02312 acyl-CoA oxidase

Probab=99.95  E-value=8.1e-28  Score=223.91  Aligned_cols=230  Identities=19%  Similarity=0.204  Sum_probs=174.1

Q ss_pred             CCCCCCCCchhhhhhccccccCCCcccccccC-CCC----CCCCCCCCCCCCcccCCCCCCHHHHHHHHHHHHHHHhhc-
Q 026317            1 MTIHSSKHQDDVDKNARSSYFNLPALDISVAF-PQA----TPASKFPPCASDYYQFDDLLTSEEQAVRMKVRECMEKEI-   74 (240)
Q Consensus         1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~----~~~~~~~~~~~~~~~m~~~l~~~~~~l~~~~~~~~~~~~-   74 (240)
                      |+.+..+....+|.+.+..|+..+.......+ |.+    .|.+....+++|...|...+..+..+.++++++++.+.. 
T Consensus         1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sf~~~~l~~~l~g~~~~~r~~~~~~~~~~p~   80 (680)
T PLN02312          1 MMAGMSPSAAARRAHVLANHLAQSPPSPNSSLTPSPCLQYSPPELNESYAFDVKEMRKLLDGHNLEDRDWLFGLMMQSDL   80 (680)
T ss_pred             CCCccchhHHHHHHHHHHHhccCCCCCCcccCCchhhhhcCCccccccCCCCHHHHHHHhCCccHHHHHHHHHHHhcCcc
Confidence            66677777778888899999976433222111 111    112223344444444443343344566777777766431 


Q ss_pred             -c-----------cc-HHHHHHhCCCCHHHHHHHHhcCcCCC-ccccCCCCCCCHHHHHHHHHHHHccCCcchHHHHhhh
Q 026317           75 -A-----------PI-MAEYWEKAEFPFHVIPKLGALRVAGG-TIKGYGCPGHSVTGAAIAIAEIARVDASCSTFILVHS  140 (240)
Q Consensus        75 -~-----------~~-~~~~d~~~~~~~~~~~~l~~~Gl~~l-~p~~~GG~g~~~~~~~~v~e~la~~~~~~~~~~~~~~  140 (240)
                       .           |. ....++...++.+.++++.+.|++++ +|+.  |.+ +....+.++|++++.+.+++..+.+|.
T Consensus        81 f~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~l~~~g~~~~~~pe~--g~~-~~~~~~~~~Eel~~~d~s~~~~~~vh~  157 (680)
T PLN02312         81 FNSKRRGGRVFVSPDYNQTMEQQREITMKRILYLLERGVFRGWLTET--GPE-AELRKLALLEVIGIYDHSLAIKLGVHF  157 (680)
T ss_pred             ccccccccccccCCccCCCHHHHHHhHHHHHHHHHHhhhcCCCCCCC--CCc-cHHHHHHHHHHHHHhcchHHHHHHhhh
Confidence             1           11 12345667888999999999999999 8874  333 678889999999999888777777887


Q ss_pred             hHHHHHHhccCCHHHHHhhchhhhcCCceEEEEeeCCCCCCCcCCCceEEEEe--CCEEEEe-----eeEeeecCC-CCC
Q 026317          141 SLAMLTIALCGSEEQKQKYLPSLAQLNTIACWALTEPAYGSDASALNTTATKV--EGGWILE-----GQKRWIGNS-TFA  212 (240)
Q Consensus       141 ~~~~~~l~~~g~~~~~~~~l~~l~~G~~~~~~a~tEp~~Gsd~~~~~t~a~~~--~~g~~Ln-----G~K~~vs~~-~~A  212 (240)
                      +++...|..+|+++||++|||++.+|+.++|+|+|||++|||+.+++|+|+++  +++|+||     |+|+||+|+ ..|
T Consensus       158 ~l~~~~I~~~GTeeqk~~~L~~~~~ge~ig~fA~TEpghGSdv~~leTtAt~D~~~defVLNtPt~~g~K~wig~a~~~A  237 (680)
T PLN02312        158 FLWGGAIKFLGTKRHHDKWLKDTEDYVVKGCFAMTELGHGSNVRGIETVTTYDPKTEEFVINTPCESAQKYWIGGAANHA  237 (680)
T ss_pred             hhHHHHHHHhCCHHHHHHHHHHHhCCCeeeEeeecCCCcCcchhcCeEEEEEeCCCCEEEECCCCCCeEEECccCCcccC
Confidence            77888899999999999999999999999999999999999999999999998  4679999     799999998 789


Q ss_pred             CEEEEEEEeCC---CCCeeEEEEe
Q 026317          213 DVLVIFARNTT---TNQINGYANQ  233 (240)
Q Consensus       213 d~~~v~a~~~~---~~~~~~flVp  233 (240)
                      |+++|+|++..   ..|+++|+||
T Consensus       238 ~~~vV~Arl~~~~~~~Gv~~FlV~  261 (680)
T PLN02312        238 THTIVFSQLHINGKNEGVHAFIAQ  261 (680)
T ss_pred             CEEEEEEEECCCCCCCCeEEEEEe
Confidence            99999999852   2579999998

>cd01154 AidB Proteins involved in DNA damage response, similar to the AidB gene product

Probab=99.94  E-value=1.8e-26  Score=205.86  Aligned_cols=163  Identities=19%  Similarity=0.182  Sum_probs=131.4

Q ss_pred             HHHHhhccccHHHHHHhCC------CC---HHHHHHHHhcCcCCCccccCCCCCCCHHHHHHHHHHHHccCCcchHHHHh
Q 026317           68 ECMEKEIAPIMAEYWEKAE------FP---FHVIPKLGALRVAGGTIKGYGCPGHSVTGAAIAIAEIARVDASCSTFILV  138 (240)
Q Consensus        68 ~~~~~~~~~~~~~~d~~~~------~~---~~~~~~l~~~Gl~~l~p~~~GG~g~~~~~~~~v~e~la~~~~~~~~~~~~  138 (240)
                      ++++++ .|...++|+.+.      +|   .++++++.+.||+++.|+++||.|  ......+.+.++..+...++.+.+
T Consensus        39 ~~a~~~-~P~~~~~d~~g~r~~~v~~~~~~~~~~~~~~~~G~~~~~~~~~~~~g--~~~~~~~~~~~~~~~~~~~~p~~~  115 (418)
T cd01154          39 RLADRN-PPVLEMWDRWGRRVDRVWVHPAWHALMRRLIEEGVINIEDGPAGEGR--RHVHFAAGYLLSDAAAGLLCPLTM  115 (418)
T ss_pred             HHhhcC-CCcccCCCCCCCcCCeEEeCHHHHHHHHHHHHcCCccCCchhhCCCc--HHHHHHHHHHHHhcchhccCcHHH
Confidence            334444 677778887776      67   788999999999998556666654  334445567777777666555545


Q ss_pred             hhhHHHHHHhccCCHHHHHhhchhhhcCC----ceEEEEeeCCCCCCCcCCCceEEEEe-CCEEEEeeeEeeecCCCCCC
Q 026317          139 HSSLAMLTIALCGSEEQKQKYLPSLAQLN----TIACWALTEPAYGSDASALNTTATKV-EGGWILEGQKRWIGNSTFAD  213 (240)
Q Consensus       139 ~~~~~~~~l~~~g~~~~~~~~l~~l~~G~----~~~~~a~tEp~~Gsd~~~~~t~a~~~-~~g~~LnG~K~~vs~~~~Ad  213 (240)
                      |. .++..|..+|+++| ++||+++++|+    .++|+++|||++|||+..++|+|+++ +|+|+|||+|+|+|++ .||
T Consensus       116 ~~-~~~~~l~~~g~~~~-~~~l~~l~~g~~~~~~~~~~~~TEp~~GSD~~~~~T~A~~~~g~~~~LnG~K~f~s~a-~Ad  192 (418)
T cd01154         116 TD-AAVYALRKYGPEEL-KQYLPGLLSDRYKTGLLGGTWMTEKQGGSDLGANETTAERSGGGVYRLNGHKWFASAP-LAD  192 (418)
T ss_pred             HH-HHHHHHHHhCcHHH-HHHHHHHhCCCcccchhheeeecCCCcccchhhCeEEEEECCCCcEEEEEEEEEecCc-ccC
Confidence            54 46678889998876 57999999997    89999999999999999999999999 8899999999999999 999


Q ss_pred             EEEEEEEeCCC----CCeeEEEEeCCc
Q 026317          214 VLVIFARNTTT----NQINGYANQSIK  236 (240)
Q Consensus       214 ~~~v~a~~~~~----~~~~~flVp~~~  236 (240)
                      +++|+|+++++    +++++|+||++.
T Consensus       193 ~~lv~Art~~~~~~~~gls~flVp~~~  219 (418)
T cd01154         193 AALVLARPEGAPAGARGLSLFLVPRLL  219 (418)
T ss_pred             EEEEEEECCCCCCCCCcEEEEEEeccC
Confidence            99999998632    579999999863

AidB is one of several genes involved in the SOS adaptive response to DNA alkylation damage, whose expression is activated by the Ada protein. Its function has not been entirely elucidated; however, it is similar in sequence and function to acyl-CoA dehydrogenases. It has been proposed that aidB directly destroys DNA alkylating agents such as nitrosoguanidines (nitrosated amides) or their reaction intermediates.

>cd01159 NcnH Naphthocyclinone hydroxylase

Probab=99.92  E-value=2.5e-24  Score=189.22  Aligned_cols=154  Identities=18%  Similarity=0.150  Sum_probs=126.5

Q ss_pred             hhccccHHHHHHhCCCCHHHHHHHHhcCcCCC-ccccCCCCCCCHHHHHHHHHHHHccCCcchHHHHhhhhHHHHHHhcc
Q 026317           72 KEIAPIMAEYWEKAEFPFHVIPKLGALRVAGG-TIKGYGCPGHSVTGAAIAIAEIARVDASCSTFILVHSSLAMLTIALC  150 (240)
Q Consensus        72 ~~~~~~~~~~d~~~~~~~~~~~~l~~~Gl~~l-~p~~~GG~g~~~~~~~~v~e~la~~~~~~~~~~~~~~~~~~~~l~~~  150 (240)
                      +.+++.+.+.|+.+.+|.+.|+.|++.||+++ +|++|||.|+++.+.+.++|++++.|+++++++..++ .....+..+
T Consensus         8 ~~~~~~a~~~d~~~~~p~~~~~~l~~~Gl~~~~vP~e~GG~g~~~~~~~~~~e~la~~~~s~a~~~~~~~-~~~~~~~~~   86 (370)
T cd01159           8 PLIRERAPEAERARRLPDEVVRALREIGFFRMFVPKRYGGLEGDFAEFAEAIATLAEACGSAAWVASIVA-THSRMLAAF   86 (370)
T ss_pred             HHHHHhHHHHHHcCCCCHHHHHHHHHCChHhhCCchhcCCCCCCHHHHHHHHHHHHhhCchHHHHHHHHH-HHHHHHHhC
Confidence            34778888899999999999999999999999 9999999999999999999999999999887655443 445667788


Q ss_pred             CCHHHHHhhchhhhcCCceEEEEeeCCCCCCCcCCCceEEEEeCCEEEEeeeEeeecCCCCCCEEEEEEEeCC---CCCe
Q 026317          151 GSEEQKQKYLPSLAQLNTIACWALTEPAYGSDASALNTTATKVEGGWILEGQKRWIGNSTFADVLVIFARNTT---TNQI  227 (240)
Q Consensus       151 g~~~~~~~~l~~l~~G~~~~~~a~tEp~~Gsd~~~~~t~a~~~~~g~~LnG~K~~vs~~~~Ad~~~v~a~~~~---~~~~  227 (240)
                      ++++|++.|++.. .+  ..+        |  ...+.|+|++++|||+|||+|.|||++..||+++|.|++++   ..++
T Consensus        87 ~~~~~~~~~~~~~-~~--~~~--------g--~~~~~t~A~~~~~gy~lnG~K~~it~~~~ad~~~v~a~~~~~~~~~~~  153 (370)
T cd01159          87 PPEAQEEVWGDGP-DT--LLA--------G--SYAPGGRAERVDGGYRVSGTWPFASGCDHADWILVGAIVEDDDGGPLP  153 (370)
T ss_pred             CHHHHHHHhCCCC-Cc--eEE--------e--eecCCceeEEeCCeEEEeccccCccCCCcCceeEeeeECCCCCCCCcc
Confidence            9999998887642 11  111        1  12456899999999999999999999999999999999753   2468


Q ss_pred             eEEEEeCCceec
Q 026317          228 NGYANQSIKFVL  239 (240)
Q Consensus       228 ~~flVp~~~~~~  239 (240)
                      ++|+||++.+++
T Consensus       154 ~~~lV~~~Gv~~  165 (370)
T cd01159         154 RAFVVPRAEYEI  165 (370)
T ss_pred             eEEEEEhHHCEE
Confidence            999999875543

Naphthocyclinone is an aromatic polyketide and an antibiotic, which is active against Gram-positive bacteria. Polyketides are secondary metabolites, which have important biological functions such as antitumor, immunosupressive or antibiotic activities. NcnH is a hydroxylase involved in the biosynthesis of naphthocyclinone and possibly other polyketides.

>PF02771 Acyl-CoA_dh_N: Acyl-CoA dehydrogenase, N-terminal domain; InterPro: IPR006092 Mammalian Co-A dehydrogenases (1

Probab=99.87  E-value=5e-22  Score=145.77  Aligned_cols=112  Identities=45%  Similarity=0.525  Sum_probs=104.4

Q ss_pred             CHHHHHHHHHHHHHHHhhccccHHHHHHhCCCCHHHHHHHHhcCcCCC-ccccCCCCCCCHHHHHHHHHHHHccCCcchH
Q 026317           56 TSEEQAVRMKVRECMEKEIAPIMAEYWEKAEFPFHVIPKLGALRVAGG-TIKGYGCPGHSVTGAAIAIAEIARVDASCST  134 (240)
Q Consensus        56 ~~~~~~l~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~l~~~Gl~~l-~p~~~GG~g~~~~~~~~v~e~la~~~~~~~~  134 (240)
                      |++++++++++++|+++.+.|...+.|+++.+|+++|+++++.||+++ +|++|||.|+++.+.+.++++++++|.++++
T Consensus         1 t~~~~~l~~~~~~~~~~~~~~~~~~~d~~~~~p~~~~~~l~~~G~~~~~~p~~~GG~~~~~~~~~~~~e~l~~~~~~~~~   80 (113)
T PF02771_consen    1 TEEQQALREEAREFAEEEIAPHAAEWDEDGRFPREVWRALGEAGLLGLAVPEEYGGLGLSPLELAIVLEELARADASLAF   80 (113)
T ss_dssp             SHHHHHHHHHHHHHHHHHTHHHHHHHHHHTSCHHHHHHHHHHTTTTSTTSCGGGTSEB-THHHHHHHHHHHHHHTHHHHH
T ss_pred             CHHHHHHHHHHHHHHHHHchHHHHHHHHhCCCCHHHHHHHHHHHHhhhhccccccCcchhhhhHHHHHHhhhhhcccccc
Confidence            578999999999999999999999998888999999999999999999 9999999999999999999999999999888


Q ss_pred             HHHhhhhHHHHHHhccCCHHHHHhhchhhhcCC
Q 026317          135 FILVHSSLAMLTIALCGSEEQKQKYLPSLAQLN  167 (240)
Q Consensus       135 ~~~~~~~~~~~~l~~~g~~~~~~~~l~~l~~G~  167 (240)
                      .+.+|+++++..|..+|+++||++|||++++|+
T Consensus        81 ~~~~~~~l~~~~i~~~gs~eq~~~~lp~~~~Ge  113 (113)
T PF02771_consen   81 ALGVHQSLGAPPIAKFGSEEQKEKWLPRLASGE  113 (113)
T ss_dssp             HHHHHHHCHHHHHHHHSHHHHHHHHHHHHHTTS
T ss_pred             hhhhhhHHHHHHHHHHCCHHHHHHHhHHHhCCC
Confidence            888887777789999999999999999999986

3.99.3 from EC) are enzymes that catalyse the first step in each cycle of beta-oxidation in mitochondion. Acyl-CoA dehydrogenases [, , ] catalyze the alpha,beta-dehydrogenation of acyl-CoA thioesters to the corresponding trans 2,3-enoyl CoA-products with concommitant reduction of enzyme-bound FAD. Reoxidation of the flavin involves transfer of electrons to ETF (electron transfering flavoprotein). These enzymes are homodimers containing one molecule of FAD. The monomeric enzyme is folded into three domains of approximately equal size. The N-terminal and the C-terminal are mainly alpha-helices packed together, and the middle domain consists of two orthogonal beta-sheets. The flavin ring is buried in the crevise between two alpha-helical domains and the beta-sheet of one subunit, and the adenosine pyrophosphate moiety is stretched into the subunit junction with one formed by two C-terminal domains []. The N-terminal domain of Acyl-CoA dehydrogenase is an all-alpha domain, on dimerisation, the N-terminal of one molecule extends into the other dimer and lies on the surface of the molecule.; GO: 0003995 acyl-CoA dehydrogenase activity, 0055114 oxidation-reduction process; PDB: 2WBI_B 1SIQ_A 1SIR_A 2R0N_A 2R0M_A 2DVL_A 1UKW_B 3MDD_B 1UDY_C 3MDE_B ....

>cd00567 ACAD Acyl-CoA dehydrogenase

Probab=99.86  E-value=2.4e-20  Score=160.94  Aligned_cols=139  Identities=34%  Similarity=0.498  Sum_probs=118.7

Q ss_pred             HHHHHHHHHHHHHHhhccccHHHHHHhCCCCHHHHHHHHhcCcCCCccccCCCCCCCHHHHHHHHHHHHccCCcchHHHH
Q 026317           58 EEQAVRMKVRECMEKEIAPIMAEYWEKAEFPFHVIPKLGALRVAGGTIKGYGCPGHSVTGAAIAIAEIARVDASCSTFIL  137 (240)
Q Consensus        58 ~~~~l~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~l~~~Gl~~l~p~~~GG~g~~~~~~~~v~e~la~~~~~~~~~~~  137 (240)
                      +++++++.+++|+.+.+.+.....++   ++...|+.+.++|++                                    
T Consensus         2 ~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~g~~------------------------------------   42 (327)
T cd00567           2 EQRELRDSAREFAAEELEPYARERRE---TPEEPWELLAELGLL------------------------------------   42 (327)
T ss_pred             hHHHHHHHHHHHHHHhccccHHhHHh---hCCCCHHHHHHHHHH------------------------------------
Confidence            46789999999999999888775544   444557777777776                                    


Q ss_pred             hhhhHHHHHHhccCCHHHHHhhchhhhcCCceEEEEeeCCCCCCCcCCCceEEEEeCCEEEEeeeEeeecCCCCCCEEEE
Q 026317          138 VHSSLAMLTIALCGSEEQKQKYLPSLAQLNTIACWALTEPAYGSDASALNTTATKVEGGWILEGQKRWIGNSTFADVLVI  217 (240)
Q Consensus       138 ~~~~~~~~~l~~~g~~~~~~~~l~~l~~G~~~~~~a~tEp~~Gsd~~~~~t~a~~~~~g~~LnG~K~~vs~~~~Ad~~~v  217 (240)
                          ++..+|..+|+++|+++|++.+++|+.++++++|||.+|||...+.+++++++|||+|||+|.|+||+..|||++|
T Consensus        43 ----~~~~~l~~~g~~~~~~~~l~~~~~g~~~~~~a~sE~~~gs~~~~~~~~a~~~~~g~~l~G~k~~~s~~~~ad~~lv  118 (327)
T cd00567          43 ----LGAALLLAYGTEEQKERYLPPLASGEAIAAFALTEPGAGSDLAGIRTTARKDGDGYVLNGRKIFISNGGDADLFIV  118 (327)
T ss_pred             ----hchHHHHHhCCHHHHHHHHHHHhCCCceEEEEecCCCCCCchhhCEeEEEEeCCEEEEEEEEEEecCCccCCEEEE
Confidence                2334677789999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             EEEeCCC----CCeeEEEEeCCc--eec
Q 026317          218 FARNTTT----NQINGYANQSIK--FVL  239 (240)
Q Consensus       218 ~a~~~~~----~~~~~flVp~~~--~~~  239 (240)
                      .++++++    +++.+|+||+++  ++|
T Consensus       119 ~a~~~~~~~~~~~~~~~lvp~~~~Gv~~  146 (327)
T cd00567         119 LARTDEEGPGHRGISAFLVPADTPGVTV  146 (327)
T ss_pred             EEEeCCCCCCCCceEEEEEeCCCCCeEe
Confidence            9997542    468899999987  654

Both mitochondrial acyl-CoA dehydrogenases (ACAD) and peroxisomal acyl-CoA oxidases (AXO) catalyze the alpha,beta dehydrogenation of the corresponding trans-enoyl-CoA by FAD, which becomes reduced. The reduced form of ACAD is reoxidized in the oxidative half-reaction by electron-transferring flavoprotein (ETF), from which the electrons are transferred to the mitochondrial respiratory chain coupled with ATP synthesis. In contrast, AXO catalyzes a different oxidative half-reaction, in which the reduced FAD is reoxidized by molecular oxygen. The ACAD family includes the eukaryotic beta-oxidation enzymes, short (SCAD), medium (MCAD), long (LCAD) and very-long (VLCAD) chain acyl-CoA dehydrogenases. These enzymes all share high sequence similarity, but differ in their substrate specificities. The ACAD family also includes amino acid catabolism enzymes such as Isovaleryl-CoA dehydrogenase (IVD), short/branched chain acyl-CoA dehydrogenases(SBCAD), Isob

>KOG1469 consensus Predicted acyl-CoA dehydrogenase [General function prediction only]

Probab=99.84  E-value=7.2e-21  Score=154.31  Aligned_cols=141  Identities=20%  Similarity=0.213  Sum_probs=115.0

Q ss_pred             HhcCcCCC-ccc--cCCCCCCCHHHHHHHHHHHHccCCcchHHH-HhhhhHHHHHHhccCCHHHHHhhchhhhcCCceEE
Q 026317           96 GALRVAGG-TIK--GYGCPGHSVTGAAIAIAEIARVDASCSTFI-LVHSSLAMLTIALCGSEEQKQKYLPSLAQLNTIAC  171 (240)
Q Consensus        96 ~~~Gl~~l-~p~--~~GG~g~~~~~~~~v~e~la~~~~~~~~~~-~~~~~~~~~~l~~~g~~~~~~~~l~~l~~G~~~~~  171 (240)
                      +..|++.+ +|.  .--|.|++..+++.++|.+|+.-...-++- .......+..|..||+++||.+||-+++.|+...|
T Consensus        37 K~eGlWNLFlp~~~qkyg~GLtnveYa~icElmGrs~~APeVfNC~APDTGNMEvl~rYGseeQks~WL~PLLeG~irSc  116 (392)
T KOG1469|consen   37 KVEGLWNLFLPAVSQKYGAGLTNVEYAHICELMGRSFFAPEVFNCQAPDTGNMEVLHRYGSEEQKSQWLIPLLEGNIRSC  116 (392)
T ss_pred             HhcchHHhhhHHHHHhhccCccchhHHHHHHHhccccccchhccCCCCCCCCeeehhhhCCHHHHhhHhHHHhcCCceee
Confidence            45799999 773  334689999999999999999654422211 11122235678999999999999999999999999


Q ss_pred             EEeeCCC-CCCCcCCCceEEEEeCCEEEEeeeEeeecCCC--CCCEEEEEEEeCCC-----CCeeEEEEeCCc
Q 026317          172 WALTEPA-YGSDASALNTTATKVEGGWILEGQKRWIGNST--FADVLVIFARNTTT-----NQINGYANQSIK  236 (240)
Q Consensus       172 ~a~tEp~-~Gsd~~~~~t~a~~~~~g~~LnG~K~~vs~~~--~Ad~~~v~a~~~~~-----~~~~~flVp~~~  236 (240)
                      ||+|||+ +.||+.++++..+++++.|+|||+|+|+||+.  .|.+.++..+++..     ...++.+||+++
T Consensus       117 FaMTEP~VASSDATNIe~SI~r~~~~YvINg~KWw~sga~~PkCrv~i~mGkt~~~~~~rhkQqSmiLVpM~T  189 (392)
T KOG1469|consen  117 FAMTEPDVASSDATNIECSIRRDGDSYVINGKKWWISGAGDPKCRIAIFMGKTDNTSASRHKQQSMILVPMNT  189 (392)
T ss_pred             EeecCCcccccccccceEEEEEcCCEEEEecceeeecCCCCCceEEEEEecccCCCccchhhcccEEEEecCC
Confidence            9999999 58899999999999999999999999999985  47888888888643     347899999875

>cd01150 AXO Peroxisomal acyl-CoA oxidase

Probab=99.84  E-value=1.8e-20  Score=173.90  Aligned_cols=121  Identities=24%  Similarity=0.308  Sum_probs=108.8

Q ss_pred             CHHHHHHHHHHHHccCCcchHHHHhhhhHHHHHHhccCCHHHHHhhchhhhcCCceEEEEeeCCCCCCCcCCCceEEEEe
Q 026317          114 SVTGAAIAIAEIARVDASCSTFILVHSSLAMLTIALCGSEEQKQKYLPSLAQLNTIACWALTEPAYGSDASALNTTATKV  193 (240)
Q Consensus       114 ~~~~~~~v~e~la~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~l~~l~~G~~~~~~a~tEp~~Gsd~~~~~t~a~~~  193 (240)
                      ++.++..+.|++++.+.+++..+.+|.++....|..+|+++|+++|||++.+|+.++|+++|||++|||+.+++|+|+++
T Consensus        80 ~~~~~~~~~e~l~~~d~~~~~~~~~h~~l~~~~i~~~Gt~eq~~~~L~~~~~g~~ig~~a~TE~ghGSdv~~leTtAt~d  159 (610)
T cd01150          80 DPEKMLALTNSLGGYDLSLGAKLGLHLGLFGNAIKNLGTDEHQDYWLQGANNLEIIGCFAQTELGHGSNLQGLETTATYD  159 (610)
T ss_pred             CHHHHHHHHHHHhccCccccceeeehHHHHHHHHHHhCCHHHHHHHHHHHhccChheeeeccccCcCcCcccceeEEEEC
Confidence            57788889999999998876666777777788899999999999999999999999999999999999999999999998


Q ss_pred             C--CEEEEe-----eeEeeecCCC-CCCEEEEEEEeC---CCCCeeEEEEeC
Q 026317          194 E--GGWILE-----GQKRWIGNST-FADVLVIFARNT---TTNQINGYANQS  234 (240)
Q Consensus       194 ~--~g~~Ln-----G~K~~vs~~~-~Ad~~~v~a~~~---~~~~~~~flVp~  234 (240)
                      +  ++|+||     |+|+|++|+. .|++++|+|++.   .+.|+++|+||.
T Consensus       160 ~~t~efvLntp~~~g~K~wi~~~~~~a~~~vV~Arl~~~g~~~Gv~~FlVp~  211 (610)
T cd01150         160 PLTQEFVINTPDFTATKWWPGNLGKTATHAVVFAQLITPGKNHGLHAFIVPI  211 (610)
T ss_pred             CCCCeEEECCCCCCceEECccCcccCCCEEEEEEEeccCCCCCCeEEEEEec
Confidence            8  889999     9999999985 499999999973   235899999996

Peroxisomal acyl-CoA oxidases (AXO) catalyze the first set in the peroxisomal fatty acid beta-oxidation, the alpha,beta dehydrogenation of the corresponding trans-enoyl-CoA by FAD, which becomes reduced. In a second oxidative half-reaction, the reduced FAD is reoxidized by molecular oxygen. AXO is generally a homodimer, but it has been reported to form a different type of oligomer in yeast. There are several subtypes of AXO's, based on substrate specificity. Palmitoyl-CoA oxidase acts on straight-chain fatty acids and prostanoids; whereas, the closely related Trihydroxycoprostanoly-CoA oxidase has the greatest activity for 2-methyl branched side chains of bile precursors. Pristanoyl-CoA oxidase, acts on 2-methyl branched fatty acids. AXO has an additional domain, C-terminal to the region with similarity to acyl-CoA dehydrogenases, which is included in this alignment.

>PRK11561 isovaleryl CoA dehydrogenase; Provisional

Probab=99.84  E-value=7.6e-20  Score=166.37  Aligned_cols=139  Identities=20%  Similarity=0.197  Sum_probs=103.7

Q ss_pred             HHHHHHHHhcCcCCC-ccccCCCCCCCHHHHHHHHHHH-HccCCcchHHHHhhhhHHHHHHhccCCHHHHHhhchhhhcC
Q 026317           89 FHVIPKLGALRVAGG-TIKGYGCPGHSVTGAAIAIAEI-ARVDASCSTFILVHSSLAMLTIALCGSEEQKQKYLPSLAQL  166 (240)
Q Consensus        89 ~~~~~~l~~~Gl~~l-~p~~~GG~g~~~~~~~~v~e~l-a~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~l~~l~~G  166 (240)
                      +++++.+.+.||.++ .++++| .+. ... ..+.+.+ +.......+.+.++  .++..+..+++++|+++|+|++++|
T Consensus        89 ~~~~~~~~~~g~~~~~~~~~~~-~~~-~~~-~~~~~~l~~~~~~g~~cp~~mT--~~a~~~l~~~~~e~~~~~lp~l~sg  163 (538)
T PRK11561         89 HLLMQGLCANRVHNLAWEEDAR-SGA-FVA-RAARFMLHAQVEAGTLCPITMT--FAATPLLLQMLPAPFQDWLTPLLSD  163 (538)
T ss_pred             HHHHHHHHHcCCccCCCCCccC-chH-HHH-HHHHHHHHhhhhHHhhchHHHH--HHHHHHHHhcCHHHHHHHHHHHhCC
Confidence            356667778999988 666665 221 222 2222333 33333333223233  3455666778899999999999999


Q ss_pred             C-------------ceEEEEeeCCCCCCCcCCCceEEEEe-CCEEEEeeeEeeecCCCCCCEEEEEEEeCCCCCeeEEEE
Q 026317          167 N-------------TIACWALTEPAYGSDASALNTTATKV-EGGWILEGQKRWIGNSTFADVLVIFARNTTTNQINGYAN  232 (240)
Q Consensus       167 ~-------------~~~~~a~tEp~~Gsd~~~~~t~a~~~-~~g~~LnG~K~~vs~~~~Ad~~~v~a~~~~~~~~~~flV  232 (240)
                      +             .+.++++|||++|||+..++|+|+++ +|+|+|||+|+||| +..||+++|+|+++  +|+++|+|
T Consensus       164 ~~~~~~~~~~~~~~~~~~~a~TEp~~GSDv~~~~T~A~~~~gg~w~LnG~K~fiS-a~~AD~~lVlArt~--~Gls~FlV  240 (538)
T PRK11561        164 RYDSHLLPGGQKRGLLIGMGMTEKQGGSDVLSNTTRAERLADGSYRLVGHKWFFS-VPQSDAHLVLAQAK--GGLSCFFV  240 (538)
T ss_pred             CcccccccchhhhhheeEEEecCCCCCCchhhCeeEEEECCCCeEEEEEEEEEEE-chhhCEEEEEEEEC--CceEEEEE
Confidence            7             45699999999999999999999994 67899999999999 58899999999986  68999999


Q ss_pred             eCC
Q 026317          233 QSI  235 (240)
Q Consensus       233 p~~  235 (240)
                      |++
T Consensus       241 p~~  243 (538)
T PRK11561        241 PRF  243 (538)
T ss_pred             ECC
Confidence            986

>PTZ00460 acyl-CoA dehydrogenase; Provisional

Probab=99.79  E-value=4.5e-19  Score=164.88  Aligned_cols=100  Identities=24%  Similarity=0.460  Sum_probs=88.6

Q ss_pred             HHHhhhhHHHHHHhccCCHHHHHhhchhhhcCCceEEEEeeCCCCCCCcCCCceEEEEe--CCEEEEe-----eeEeeec
Q 026317          135 FILVHSSLAMLTIALCGSEEQKQKYLPSLAQLNTIACWALTEPAYGSDASALNTTATKV--EGGWILE-----GQKRWIG  207 (240)
Q Consensus       135 ~~~~~~~~~~~~l~~~g~~~~~~~~l~~l~~G~~~~~~a~tEp~~Gsd~~~~~t~a~~~--~~g~~Ln-----G~K~~vs  207 (240)
                      .+.+|.++....|..+|+++|+++|||++.+|+.++|+|+|||++|||+.+++|+|+++  +++|+||     |+|+||+
T Consensus        94 ~~~vh~~~~~~~I~~~GT~eQk~~~Lp~~~~ge~ig~~A~TEpghGSdv~~leTtAt~d~~~defvLntPt~~g~K~wi~  173 (646)
T PTZ00460         94 ISTVHFAMVIPAFQVLGTDEQINLWMPSLLNFEIVGCYAQTELGHGSDVQNLETTATYDKQTNEFVIHTPSVEAVKFWPG  173 (646)
T ss_pred             eEEeeHhhHHHHHHHhCCHHHHHHHHHHHhCCChheeeeecCCCccCCcccceEEEEEcCCCCEEEECCCCCCeEEEccC
Confidence            34566666677788999999999999999999999999999999999999999999985  6789998     9999999


Q ss_pred             C-CCCCCEEEEEEEeCC---CCCeeEEEEeC
Q 026317          208 N-STFADVLVIFARNTT---TNQINGYANQS  234 (240)
Q Consensus       208 ~-~~~Ad~~~v~a~~~~---~~~~~~flVp~  234 (240)
                      | +..||+++|+|++..   +.|+++|+||.
T Consensus       174 ~~g~~A~~~vV~Arl~~~~~~~Gi~~FlV~i  204 (646)
T PTZ00460        174 ELGFLCNFALVYAKLIVNGKNKGVHPFMVRI  204 (646)
T ss_pred             CCCCCCCEEEEEEEECcCCCCCceEEEEEec
Confidence            8 688999999999842   35899999993

>PLN02443 acyl-coenzyme A oxidase

Probab=99.76  E-value=2.8e-18  Score=159.85  Aligned_cols=99  Identities=31%  Similarity=0.459  Sum_probs=88.3

Q ss_pred             HhhhhHHHHHHhccCCHHHHHhhchhhhcCCceEEEEeeCCCCCCCcCCCceEEEEe--CCEEEEe-----eeEeeecCC
Q 026317          137 LVHSSLAMLTIALCGSEEQKQKYLPSLAQLNTIACWALTEPAYGSDASALNTTATKV--EGGWILE-----GQKRWIGNS  209 (240)
Q Consensus       137 ~~~~~~~~~~l~~~g~~~~~~~~l~~l~~G~~~~~~a~tEp~~Gsd~~~~~t~a~~~--~~g~~Ln-----G~K~~vs~~  209 (240)
                      .+|.++....|..+|+++|+++|||++.+|+.++|+|+|||++|||+.+++|+|+++  +++|+||     |+|+|++|+
T Consensus       100 ~~~~~~f~~~I~~~GT~eQk~~~L~~~~~g~iig~fA~TE~ghGSdv~~leTtAt~d~~~~efvIntP~~~g~K~wig~~  179 (664)
T PLN02443        100 DLHWGMFVPAIKGQGTEEQQKKWLPLAYKMQIIGCYAQTELGHGSNVQGLETTATFDPKTDEFVIHSPTLTSSKWWPGGL  179 (664)
T ss_pred             eehHhHHHHHHHHhCCHHHHHHHHHHHhCCChheEEEecCCCcccchhhCeEEEEEeCCCCEEEECCCCCCEEEEeecCC
Confidence            356556667788899999999999999999999999999999999999999999998  6789998     999999997


Q ss_pred             -CCCCEEEEEEEeCC---CCCeeEEEEeCC
Q 026317          210 -TFADVLVIFARNTT---TNQINGYANQSI  235 (240)
Q Consensus       210 -~~Ad~~~v~a~~~~---~~~~~~flVp~~  235 (240)
                       ..||+++|+|++..   +.|+++|+||.+
T Consensus       180 ~~~A~~~vV~Arl~~~~~~~Gv~~FlVp~r  209 (664)
T PLN02443        180 GKVSTHAVVYARLITNGKDHGIHGFIVQLR  209 (664)
T ss_pred             cccCCEEEEEEEECCCCCCCCeEEEEEecC
Confidence             68999999999732   358999999965

>PF02770 Acyl-CoA_dh_M: Acyl-CoA dehydrogenase, middle domain; InterPro: IPR006091 Acyl-CoA dehydrogenases (1

Probab=99.73  E-value=9.6e-18  Score=105.72  Aligned_cols=52  Identities=44%  Similarity=0.742  Sum_probs=47.3

Q ss_pred             EEEeeCCCCCCCcCCCceEEEEeCCEEEEeeeEeeecCCCCCCEEEEEEEeC
Q 026317          171 CWALTEPAYGSDASALNTTATKVEGGWILEGQKRWIGNSTFADVLVIFARNT  222 (240)
Q Consensus       171 ~~a~tEp~~Gsd~~~~~t~a~~~~~g~~LnG~K~~vs~~~~Ad~~~v~a~~~  222 (240)
                      |+|+|||++|+|+..++|+|++++++|+|||+|+||+|+..||+++|+||++
T Consensus         1 ~~a~tE~~~g~d~~~~~t~a~~~~~~~~L~G~K~~v~~~~~a~~~~v~ar~d   52 (52)
T PF02770_consen    1 AFALTEPGAGSDLAAVETTARRDGDGYVLNGEKRFVSNAPDADWFLVFARTD   52 (52)
T ss_dssp             EEE--BTTBSSSGGG-SSEEEEETTEEEEEEEEEEEETTTTESEEEEEEEES
T ss_pred             CEEEcCCCCCCCcccCEEEeecccceEEEeeEEEEECCcCccCEEEEEEEEC
Confidence            6899999999999999999999999999999999999999999999999973

3.99.3 from EC) are a family of flavoproteins that catalyse the alpha,beta-dehydrogenation of acyl-CoA thioesters to the corresponding trans 2,3-enoyl CoA-products with the concomitant reduction of enzyme-bound FAD. Different family members share a high sequence identity, catalytic mechanisms, and structural properties, but differ in the position of their catalytic bases and in their substrate binding specificity. Butyryl-CoA dehydrogenase [] prefers short chain substrates, medium chain- and long-chain acyl-CoA dehydrogenases prefer medium and long chain substrates, respectively, and Isovaleryl-CoA dehydrogenase [] prefers branched-chain substrates. The monomeric enzyme is folded into three domains of approximately equal size, where the N-terminal domain is all-alpha, the middle domain is an open (5,8) barrel, and the C-terminal domain is a four-helical bundle. The constituent families differ in the numbers of C-terminal domains. This entry represents the middle beta-barrel domain found in medium chain acyl-CoA dehydrogenases, as well as in the related peroxisomal acyl-CoA oxidase-II enzymes. Acyl-CoA oxidase (ACO; 1.3.3.6 from EC) catalyzes the first and rate-determining step of the peroxisomal beta-oxidation of fatty acids [].; GO: 0003995 acyl-CoA dehydrogenase activity, 0055114 oxidation-reduction process; PDB: 3MDD_B 1UDY_C 3MDE_B 2UXW_A 3B96_A 1SIQ_A 1SIR_A 2R0N_A 2R0M_A 2D29_B ....

>KOG0135 consensus Pristanoyl-CoA/acyl-CoA oxidase [Lipid transport and metabolism; Secondary metabolites biosynthesis, transport and catabolism]

Probab=99.71  E-value=3e-17  Score=144.48  Aligned_cols=212  Identities=22%  Similarity=0.288  Sum_probs=165.7

Q ss_pred             cCCCcccccccCCCCCCCCCCCCCCCCcccCCCCCCHH--HHHHHHHHHHHHHhhc----ccc-HHHHHHhCCCCHHHHH
Q 026317           21 FNLPALDISVAFPQATPASKFPPCASDYYQFDDLLTSE--EQAVRMKVRECMEKEI----API-MAEYWEKAEFPFHVIP   93 (240)
Q Consensus        21 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~m~~~l~~~--~~~l~~~~~~~~~~~~----~~~-~~~~d~~~~~~~~~~~   93 (240)
                      .+.|.+...+.+|..+...++..+.+|+..|...+.-|  ..++...+-.++++.-    .|. ....|+.+++....|.
T Consensus         5 ~~~~~~~~~p~l~~~Pl~~yr~~a~fdwK~~rl~~ege~~~lr~k~~vf~~~e~~p~~f~~p~~~l~me~qRel~~~r~~   84 (661)
T KOG0135|consen    5 SSNPSLSLEPCLPSSPLDEYRKRATFDWKELRLLVEGENDGLRIKSKVFNRLESDPDLFVSPDRNLSMEEQRELCMKRIK   84 (661)
T ss_pred             CCCCCccccccCCCCCcHHHHHhcCCCHHHHHHHhcccccceeeHHHHhhHhhcCCCeecCcccccCHHHHHHHHHHHHH
Confidence            35677777777777554667788888887776655544  4566677766666542    122 2235667777878888


Q ss_pred             HHHhcCcCCC-ccccCCCCCCCHHHHHHHHHHHHccCCcchHHHHhhhhHHHHHHhccCCHHHHHhhchhhhcCCceEEE
Q 026317           94 KLGALRVAGG-TIKGYGCPGHSVTGAAIAIAEIARVDASCSTFILVHSSLAMLTIALCGSEEQKQKYLPSLAQLNTIACW  172 (240)
Q Consensus        94 ~l~~~Gl~~l-~p~~~GG~g~~~~~~~~v~e~la~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~l~~l~~G~~~~~~  172 (240)
                      .|.+.|.+.. ..+. + . -...-+..+.|.++.+|.|++.-+.+|..+.+..+..+||+..++ |+..+-.-+.++||
T Consensus        85 ~l~~~gv~~~~~~~~-~-~-~~~~k~~al~E~lg~yd~sls~K~~lh~~lfg~AV~~~GT~rH~~-yi~~~~n~ev~gcf  160 (661)
T KOG0135|consen   85 RLVELGVFKFWLVED-G-P-EAELKKFALTEALGIYDQSLSAKLGLHFLLFGNAVKSMGTKRHHD-YIQKTENYEVKGCF  160 (661)
T ss_pred             HHHHhccCcceeecC-c-h-HHHHHHHHHHHHHhhcCcchhhhhhhhhhhhhHHHHhhccHHHHH-HHhhhhcceeeeeE
Confidence            8888887765 2222 1 1 135568889999999999999999999988899999999988877 99999999999999


Q ss_pred             EeeCCCCCCCcCCCceEEEEe--CCEEEEe-----eeEeeecCC-CCCCEEEEEEEe---CCCCCeeEEEEeCCc
Q 026317          173 ALTEPAYGSDASALNTTATKV--EGGWILE-----GQKRWIGNS-TFADVLVIFARN---TTTNQINGYANQSIK  236 (240)
Q Consensus       173 a~tEp~~Gsd~~~~~t~a~~~--~~g~~Ln-----G~K~~vs~~-~~Ad~~~v~a~~---~~~~~~~~flVp~~~  236 (240)
                      |+||.++||++.+++|+|+.|  .+.|+||     ..|+||.|+ .+|++.+|+|+.   ..+.|++.|+|+..+
T Consensus       161 amTEl~HGSNt~~I~TtatyDP~t~EfVinTP~~~A~K~WiGn~a~~athavvfa~L~~~g~n~G~H~FiiqIRd  235 (661)
T KOG0135|consen  161 AMTELGHGSNTKGIQTTATYDPTTEEFVINTPDFSAIKCWIGNAAKHATHAVVFAQLHVPGQNHGLHGFIIQIRD  235 (661)
T ss_pred             EEeeecCCccccceeeeeeecCCCCeeEecCCcHHHHHHHhccccccceEEEEEEEeeecCccCceeeEEEEeec
Confidence            999999999999999999998  6789998     789999996 579999999986   234689999998543

>KOG0136 consensus Acyl-CoA oxidase [Lipid transport and metabolism]

Probab=98.92  E-value=2.8e-09  Score=96.48  Aligned_cols=103  Identities=23%  Similarity=0.298  Sum_probs=88.7

Q ss_pred             hHHHHhhhhHHHHHHhccCCHHHHHhhchhhhcCCceEEEEeeCCCCCCCcCCCceEEEEeC--CEEEEe-----eeEee
Q 026317          133 STFILVHSSLAMLTIALCGSEEQKQKYLPSLAQLNTIACWALTEPAYGSDASALNTTATKVE--GGWILE-----GQKRW  205 (240)
Q Consensus       133 ~~~~~~~~~~~~~~l~~~g~~~~~~~~l~~l~~G~~~~~~a~tEp~~Gsd~~~~~t~a~~~~--~g~~Ln-----G~K~~  205 (240)
                      +..+.+|..+....|..-|+++|.++||.+....++++|+|-||-++|+++++++|+|+.+.  +.|+||     ..|||
T Consensus       108 ~~pl~lH~~MFvp~l~~q~t~EQ~~~Wl~~a~~~~IiGtYAQTElGHGTnl~~LET~AtyD~~T~eFVl~TPt~ta~KWW  187 (670)
T KOG0136|consen  108 GHPLALHYGMFVPTLKGQGTDEQQEKWLSRALNMEIIGTYAQTELGHGTNLRGLETTATYDPKTQEFVLNTPTLTATKWW  187 (670)
T ss_pred             CchhhhhhhhhhhHhhcCCCHHHHHHHHHhcccceEEEeehhhhhcccccccccceeeeecCCcceEEecCCCcceeccc
Confidence            34455687788889999999999999999999999999999999999999999999999875  459887     89999


Q ss_pred             ecCC-CCCCEEEEEEEe---CCCCCeeEEEEeCC
Q 026317          206 IGNS-TFADVLVIFARN---TTTNQINGYANQSI  235 (240)
Q Consensus       206 vs~~-~~Ad~~~v~a~~---~~~~~~~~flVp~~  235 (240)
                      ..+. ..|+|.+|.|+.   ...-|+..|+||-.
T Consensus       188 PGgLG~ssnhAvV~AqL~~~gk~~G~h~FiV~lR  221 (670)
T KOG0136|consen  188 PGGLGKSSNHAVVVAQLITKGKCYGPHPFIVQLR  221 (670)
T ss_pred             CCccccccchheeeeeeeecccccccceeEEEcc
Confidence            9884 568999999986   33468999999853

>TIGR02309 HpaB-1 4-hydroxyphenylacetate 3-monooxygenase, oxygenase component

Probab=98.15  E-value=1.7e-05  Score=72.11  Aligned_cols=88  Identities=19%  Similarity=0.240  Sum_probs=63.9

Q ss_pred             hccCCH--HHHHhhchhhhcCCceEEEEeeCCCC-CC----CcCCCce--EE-EEeCCEEEEeeeEeeecCCCCCCEEEE
Q 026317          148 ALCGSE--EQKQKYLPSLAQLNTIACWALTEPAY-GS----DASALNT--TA-TKVEGGWILEGQKRWIGNSTFADVLVI  217 (240)
Q Consensus       148 ~~~g~~--~~~~~~l~~l~~G~~~~~~a~tEp~~-Gs----d~~~~~t--~a-~~~~~g~~LnG~K~~vs~~~~Ad~~~v  217 (240)
                      ..++++  +--.+|+..+...++..+.+++.|.. -|    ....+..  +. +++++||+|||.|.|+|++ .||+++|
T Consensus       119 ~~~~~~y~~n~~~y~~~~~~~dl~~~~a~~dp~~dRs~~~~~~~d~~~~~~Vve~~~dGiVV~GaK~~~T~~-~ad~~~V  197 (477)
T TIGR02309       119 GKSNSEFAENVRNYYEYLRDNDLALTHALTNPQVNRAKPPSEQPDPYIALGVVEQTDKGVIVRGARMTATFP-IADEILI  197 (477)
T ss_pred             hhcCcHHHHHHHHHHHHHHHhCceeeccccCCCCCCCCChhhcCCCCcceeEEEEcCCCEEEeCHHHhhhhc-ccceEEE
Confidence            444443  33477889999999999999999863 11    1112222  33 4578899999999999997 9999999


Q ss_pred             EEEeCCC----CC--eeEEEEeCCc
Q 026317          218 FARNTTT----NQ--INGYANQSIK  236 (240)
Q Consensus       218 ~a~~~~~----~~--~~~flVp~~~  236 (240)
                      ++++...    ++  .++|+||+++
T Consensus       198 ~~~~~~~~~~~~~~ya~~F~VP~dt  222 (477)
T TIGR02309       198 FPSTVLKAGAEKDPYALAFAIPTNT  222 (477)
T ss_pred             eccCCCCCccCCCCeEEEEEeeCCC
Confidence            9987432    23  6899999875

This gene for this monooxygenase is found within apparent operons for the degradation of 4-hydroxyphenylacetic acid in Deinococcus, Thermus and Oceanobacillus. Phylogenetic trees support inclusion of the Bacillus halodurans sequence above trusted although the complete 4-hydroxyphenylacetic acid degradation pathway may not exist in that organism. Generally, this enzyme acts with the assistance of a small flavin reductase domain protein (HpaC) to provide the cycle the flavin reductant for the reaction. This family of sequences is a member of a larger subfamily of monooxygenases (pfam03241).

>PF11794 HpaB_N: 4-hydroxyphenylacetate 3-hydroxylase N terminal; InterPro: IPR024674 This domain is found in the N terminus of HpaB, which encodes part of the 4-hydroxyphenylacetate 3-hydroxylase from Escherichia coli []

Probab=94.68  E-value=0.23  Score=41.73  Aligned_cols=83  Identities=14%  Similarity=0.275  Sum_probs=52.1

Q ss_pred             HHHHhhchhhhcCCceEEEEeeCCCC--CCCc----CCCceEEE-EeCCEEEEeeeEeeecCCCCCCEEEEEEEeC---C
Q 026317          154 EQKQKYLPSLAQLNTIACWALTEPAY--GSDA----SALNTTAT-KVEGGWILEGQKRWIGNSTFADVLVIFARNT---T  223 (240)
Q Consensus       154 ~~~~~~l~~l~~G~~~~~~a~tEp~~--Gsd~----~~~~t~a~-~~~~g~~LnG~K~~vs~~~~Ad~~~v~a~~~---~  223 (240)
                      +-..+|+..+....+..+.+++.|..  +...    ..+-.+.+ +.++|.+|+|.|...|+++.+|.++|+-...   +
T Consensus       123 ~n~~~y~~~~~~ndL~~t~a~~dPq~DRs~~~~q~d~d~~lrVVee~~dGIvVrGAK~~~T~a~~adei~V~p~~~~~~~  202 (264)
T PF11794_consen  123 ENIRRYYEYVQENDLFLTHAITDPQGDRSKPPHQEDPDVYLRVVEETDDGIVVRGAKMLATGAPYADEILVFPTRAMRPG  202 (264)
T ss_dssp             HHHHHHHHHHHHHT--EEEEES--SSSTTSTGGSSSCCSB-EEEEE-SSEEEEEEEEEEEETGCCSSEEEE--SSSSTTC
T ss_pred             HHHHHHHHHHHHhCcEeeeeeeCCCcCCCCCccccCCCceEEEEEEcCCCEEEeChhhhhcCCcccccEEEeeccCCCCC
Confidence            33467888888899999999999973  2111    11233443 4678999999999999999999999976532   1


Q ss_pred             CC-CeeEEEEeCCc
Q 026317          224 TN-QINGYANQSIK  236 (240)
Q Consensus       224 ~~-~~~~flVp~~~  236 (240)
                      +. --.+|.||.+.
T Consensus       203 d~dyAv~FavP~~t  216 (264)
T PF11794_consen  203 DEDYAVAFAVPMNT  216 (264)
T ss_dssp             CGGG-EEEEEETT-
T ss_pred             CCceEEEEEccCCC
Confidence            22 24578888763

The enzyme is NADH-dependent and uses FAD as the redox chromophore. The domain is also found in pyoverdin chromophore biosynthetic protein (PvcC), which may play a role in one of the proposed hydroxylation steps of pyoverdine chromophore biosynthesis [] and in 4-hydroxybutyryl-CoA dehydratase (4-BUDH), a key enzyme in the metabolism of gamma-aminobutyrate [].; PDB: 3HWC_D 1U8V_D 2YYM_A 2YYI_A 2YYJ_A 2YYL_A 2YYG_A 2YYK_A.

>PF14749 Acyl-CoA_ox_N: Acyl-coenzyme A oxidase N-terminal; PDB: 2FON_A 1W07_B 1IS2_B 2DDH_A

Probab=92.12  E-value=0.079  Score=39.16  Aligned_cols=33  Identities=30%  Similarity=0.421  Sum_probs=27.2

Q ss_pred             HHhhhhHHHHHHhccCCHHHHHhhchhhhcCCc
Q 026317          136 ILVHSSLAMLTIALCGSEEQKQKYLPSLAQLNT  168 (240)
Q Consensus       136 ~~~~~~~~~~~l~~~g~~~~~~~~l~~l~~G~~  168 (240)
                      +.+|.++....|...||++|+++|+|...+.+.
T Consensus        92 ~~lH~~mFip~I~~qgt~EQ~~~Wlp~a~~~~I  124 (125)
T PF14749_consen   92 LGLHFGMFIPTIMGQGTEEQQAKWLPKAENYEI  124 (125)
T ss_dssp             HHHHHHTHHHHHHHHS-HHHHHHHHHHHHTTSS
T ss_pred             hhhHHHHHHHHHHHcCCHHHHHHHHHHHHCCcc
Confidence            347888888999999999999999999877664

>COG2368 Aromatic ring hydroxylase [Secondary metabolites biosynthesis, transport, and catabolism]

Probab=91.30  E-value=0.67  Score=41.90  Aligned_cols=87  Identities=17%  Similarity=0.318  Sum_probs=60.7

Q ss_pred             cCCH--HHHHhhchhhhcCCceEEEEeeCCCC-CC----CcC--CCceEE-EEeCCEEEEeeeEeeecCCCCCCEEEEE-
Q 026317          150 CGSE--EQKQKYLPSLAQLNTIACWALTEPAY-GS----DAS--ALNTTA-TKVEGGWILEGQKRWIGNSTFADVLVIF-  218 (240)
Q Consensus       150 ~g~~--~~~~~~l~~l~~G~~~~~~a~tEp~~-Gs----d~~--~~~t~a-~~~~~g~~LnG~K~~vs~~~~Ad~~~v~-  218 (240)
                      ++++  +--.+|+..+...++..+-|+|.|.. -|    ...  .+-.+. .+.++|.+++|.|..+|+++.+|.++|+ 
T Consensus       125 ~~~dy~~n~~~~~k~vqk~DL~~~hA~tdpk~dRsk~p~e~~dpdiyvrVvee~~dGIVVrGAK~~aT~~a~tdei~V~P  204 (493)
T COG2368         125 FGTDYHENAREYYKEVQKNDLALTHAITDPKGDRSKRPSEQKDPDIYVRVVEETEDGIVVRGAKALATGSALTDEIFVLP  204 (493)
T ss_pred             ccchHHHHHHHHHHHHHhcCceeeeceecCCccCCCChhhccCCCeeEEEEEEecCceEEEChHHHhccccccceEEEee
Confidence            4553  34467899999999999999999863 11    112  222333 3467899999999999999999999988 


Q ss_pred             EEe--CCCCC-eeEEEEeCCc
Q 026317          219 ARN--TTTNQ-INGYANQSIK  236 (240)
Q Consensus       219 a~~--~~~~~-~~~flVp~~~  236 (240)
                      .+.  .++.. -..|.+|+++
T Consensus       205 t~~~~~~d~dfAv~FaiP~dt  225 (493)
T COG2368         205 TRSMQEDDKDFAVAFAIPMDT  225 (493)
T ss_pred             ccccCCCCCceEEEEEcccCC
Confidence            443  22223 4568888764

>TIGR02310 HpaB-2 4-hydroxyphenylacetate 3-monooxygenase, oxygenase component

Probab=89.89  E-value=0.59  Score=43.10  Aligned_cols=83  Identities=11%  Similarity=0.163  Sum_probs=57.6

Q ss_pred             HHHHhhchhhhcCCceEEEEeeCCCC-CC----CcCCCceEE-EEeCCEEEEeeeEeeecCCCCCCEEEE-EEEe---CC
Q 026317          154 EQKQKYLPSLAQLNTIACWALTEPAY-GS----DASALNTTA-TKVEGGWILEGQKRWIGNSTFADVLVI-FARN---TT  223 (240)
Q Consensus       154 ~~~~~~l~~l~~G~~~~~~a~tEp~~-Gs----d~~~~~t~a-~~~~~g~~LnG~K~~vs~~~~Ad~~~v-~a~~---~~  223 (240)
                      +--.+|+..+.+..+..+.+++.|.. -|    ....+-.+. ++.++|.+|+|.|...|+++.+|.++| ....   .+
T Consensus       136 ~n~~~yy~~~qenDL~~~hA~~dPk~DRsk~p~e~~D~~v~VVee~~dGIVVrGAK~~aT~a~~a~ei~V~~~~~~~~~~  215 (519)
T TIGR02310       136 DNARNWYKRIQESCLYFNHAIVNPPIDRNKPIDQVKDVYIKIEEERDDGIVVSGAKVVATNSALTHYNFIGFGSAQIIGD  215 (519)
T ss_pred             HHHHHHHHHHHHhCceeecceeCCCCCCCCccccCCCCceEEEEEcCCcEEEeCHHHHhcccchhcceeeccCcccccCC
Confidence            33467888888999999999998863 11    111222233 456789999999999999999999988 4443   12


Q ss_pred             CCC-eeEEEEeCCc
Q 026317          224 TNQ-INGYANQSIK  236 (240)
Q Consensus       224 ~~~-~~~flVp~~~  236 (240)
                      +.. -..|.||.+.
T Consensus       216 d~dyAvaFavP~dt  229 (519)
T TIGR02310       216 NDDFALMFIAPMDA  229 (519)
T ss_pred             CCCeEEEEEeEcCC
Confidence            333 3468888764

This gene for this monooxygenase is found within apparent operons for the degradation of 4-hydroxyphenylacetic acid in Shigella, Photorhabdus and Pasteurella. The family modelled by this alignment is narrowly limited to gammaproteobacteria to exclude other aromatic hydroxylases involved in various secondary metabolic pathways. Generally, this enzyme acts with the assistance of a small flavin reductase domain protein (HpaC) to provide the cycle the flavin reductant for the reaction. This family of sequences is a member of a larger subfamily of monooxygenases (pfam03241).

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	240
2ix6_A	449	Short Chain Specific Acyl-Coa Oxidase From Arabidop		1e-108
2ix5_A	436	Short Chain Specific Acyl-Coa Oxidase From Arabidop		1e-108
3sf6_A	403	Crystal Structure Of Glutaryl-Coa Dehydrogenase Fro		4e-32
2eba_A	385	Crystal Structure Of The Putative Glutaryl-coa Dehy		5e-32
3swo_A	399	Crystal Structure Of A Glutaryl-Coa Dehydrogenase F		3e-29
2r0m_A	394	The Effect Of A Glu370asp Mutation In Glutaryl-Coa		3e-26
1sir_A	394	The Crystal Structure And Mechanism Of Human Glutar		3e-26
1siq_A	392	The Crystal Structure And Mechanism Of Human Glutar		3e-26
1ws9_A	387	Crystal Structure Of Project Id Tt0172 From Thermus		5e-26
3gqt_A	399	Crystal Structure Of Glutaryl-Coa Dehydrogenase Fro		4e-25
3eom_A	396	2.4 A Crystal Structure Of Native Glutaryl-Coa Dehy		4e-25
3d6b_A	395	2.2 A Crystal Structure Of Glutaryl-Coa Dehydrogena		5e-25
1jqi_A	388	Crystal Structure Of Rat Short Chain Acyl-Coa Dehyd		3e-20
3pfd_A	393	Crystal Structure Of An Acyl-Coa Dehydrogenase From		6e-20
3owa_A	597	Crystal Structure Of Acyl-Coa Dehydrogenase Complex		4e-19
2vig_A	391	Crystal Structure Of Human Short-Chain Acyl Coa Deh		1e-18
1ukw_A	379	Crystal Structure Of Medium-Chain Acyl-Coa Dehydrog		3e-18
3nf4_A	387	Crystal Structure Of Acyl-Coa Dehydrogenase From My		2e-17
2dvl_A	372	Crystal Structure Of Project Tt0160 From Thermus Th		4e-17
2jif_A	404	Structure Of Human Short-Branched Chain Acyl-Coa De		2e-16
3mpi_A	397	Structure Of The Glutaryl-Coenzyme A Dehydrogenase		4e-16
1ivh_A	394	Structure Of Human Isovaleryl-coa Dehydrogenase At		9e-16
1rx0_A	393	Crystal Structure Of Isobutyryl-Coa Dehydrogenase C		2e-15
2z1q_A	577	Crystal Structure Of Acyl Coa Dehydrogenase Length		3e-15
3b96_A	587	Structural Basis For Substrate Fatty-Acyl Chain Spe		1e-14
2uxw_A	607	Crystal Structure Of Human Very Long Chain Acyl-coa		1e-14
1udy_A	396	Medium-Chain Acyl-Coa Dehydrogenase With 3-Thiaocta		4e-13
2a1t_A	421	Structure Of The Human Mcad:etf E165betaa Complex L		8e-13
1egd_A	396	Structure Of T255e, E376g Mutant Of Human Medium Ch		9e-13
1ege_A	396	Structure Of T255e, E376g Mutant Of Human Medium Ch		9e-13
2pg0_A	385	Crystal Structure Of Acyl-Coa Dehydrogenase From Ge		1e-12
3mdd_A	385	Crystal Structures Of Medium Chain Acyl-Coa Dehydro		3e-12
1buc_A	383	Three-Dimensional Structure Of Butyryl-Coa Dehydrog		5e-12
3r7k_A	403	Crystal Structure Of A Probable Acyl Coa Dehydrogen		1e-07
2wbi_A	428	Crystal Structure Of Human Acyl-Coa Dehydrogenase 1		1e-05
3oib_A	403	Crystal Structure Of A Putative Acyl-Coa Dehydrogen		5e-05
2fon_A	683	X-Ray Crystal Structure Of Leacx1, An Acyl-Coa Oxid		2e-04
1w07_A	659	Arabidopsis Thaliana Acyl-Coa Oxidase 1 Length = 65		3e-04

>pdb|2IX6|A Chain A, Short Chain Specific Acyl-Coa Oxidase From Arabidopsis Thaliana, Acx4 Length = 449

Iteration: 1
 Score =  388 bits (996), Expect = e-108,   Method: Compositional matrix adjust.
 Identities = 179/230 (77%), Positives = 200/230 (86%)
Query: 1   MTIHSSKHQDDVDKNARSSYFNLPALDISVAFPQATPASKFPPCASDYYQFDDLLTSEEQ 60
           M + SS  +   +K  +SSYF+LP +++SVAFPQATPAS FPPC SDYY F+DLLT EEQ
Sbjct: 1   MAVLSSADRASNEKKVKSSYFDLPPMEMSVAFPQATPASTFPPCTSDYYHFNDLLTPEEQ 60
Query: 61  AVRMKVRECMEKEIAPIMAEYWEKAEFPFHVIPKLGALRVAGGTIKGYGCPGHSVTGAAI 120
           A+R KVRECMEKE+APIM EYWEKAEFPFH+ PKLGA+ VAGG+IKGYGCPG S+T  AI
Sbjct: 61  AIRKKVRECMEKEVAPIMTEYWEKAEFPFHITPKLGAMGVAGGSIKGYGCPGLSITANAI 120
Query: 121 AIAEIARVDASCSTFILVHSSLAMLTIALCGSEEQKQKYLPSLAQLNTIACWALTEPAYG 180
           A AEIARVDASCSTFILVHSSL MLTIALCGSE QK+KYLPSLAQLNT+ACWALTEP  G
Sbjct: 121 ATAEIARVDASCSTFILVHSSLGMLTIALCGSEAQKEKYLPSLAQLNTVACWALTEPDNG 180
Query: 181 SDASALNTTATKVEGGWILEGQKRWIGNSTFADVLVIFARNTTTNQINGY 230
           SDAS L TTATKVEGGW + GQKRWIGNSTFAD+L+IFARNTTTNQING+
Sbjct: 181 SDASGLGTTATKVEGGWKINGQKRWIGNSTFADLLIIFARNTTTNQINGF 230

>pdb|2IX5|A Chain A, Short Chain Specific Acyl-Coa Oxidase From Arabidopsis Thaliana, Acx4 In Complex With Acetoacetyl-Coa Length = 436

Iteration: 1
 Score =  387 bits (995), Expect = e-108,   Method: Compositional matrix adjust.
 Identities = 179/230 (77%), Positives = 200/230 (86%)
Query: 1   MTIHSSKHQDDVDKNARSSYFNLPALDISVAFPQATPASKFPPCASDYYQFDDLLTSEEQ 60
           M + SS  +   +K  +SSYF+LP +++SVAFPQATPAS FPPC SDYY F+DLLT EEQ
Sbjct: 1   MAVLSSADRASNEKKVKSSYFDLPPMEMSVAFPQATPASTFPPCTSDYYHFNDLLTPEEQ 60
Query: 61  AVRMKVRECMEKEIAPIMAEYWEKAEFPFHVIPKLGALRVAGGTIKGYGCPGHSVTGAAI 120
           A+R KVRECMEKE+APIM EYWEKAEFPFH+ PKLGA+ VAGG+IKGYGCPG S+T  AI
Sbjct: 61  AIRKKVRECMEKEVAPIMTEYWEKAEFPFHITPKLGAMGVAGGSIKGYGCPGLSITANAI 120
Query: 121 AIAEIARVDASCSTFILVHSSLAMLTIALCGSEEQKQKYLPSLAQLNTIACWALTEPAYG 180
           A AEIARVDASCSTFILVHSSL MLTIALCGSE QK+KYLPSLAQLNT+ACWALTEP  G
Sbjct: 121 ATAEIARVDASCSTFILVHSSLGMLTIALCGSEAQKEKYLPSLAQLNTVACWALTEPDNG 180
Query: 181 SDASALNTTATKVEGGWILEGQKRWIGNSTFADVLVIFARNTTTNQINGY 230
           SDAS L TTATKVEGGW + GQKRWIGNSTFAD+L+IFARNTTTNQING+
Sbjct: 181 SDASGLGTTATKVEGGWKINGQKRWIGNSTFADLLIIFARNTTTNQINGF 230

>pdb|3SF6|A Chain A, Crystal Structure Of Glutaryl-Coa Dehydrogenase From Mycobacterium Smegmatis Length = 403

Iteration: 1
 Score =  134 bits (337), Expect = 4e-32,   Method: Compositional matrix adjust.
 Identities = 71/187 (37%), Positives = 106/187 (56%), Gaps = 3/187 (1%)
Query: 45  ASDYYQFDDLLTSEEQAVRMKVRECMEKEIAPIMAEYWEKAEFPFHVIP-KLGALRVAGG 103
           A D    + +L++EE+ +R  VR  +++ I P +A ++E  E P   +  +LG L + G 
Sbjct: 20  ADDLIGINAVLSAEEREIRDTVRSVVQRRIKPHIASWYEDGELPARELAVELGELGLLGM 79
Query: 104 TIKGYGCPGHSVTGAAIAIAEIARVDASCSTFILVHSSLAMLTIALCGSEEQKQKYLPSL 163
            +KGYGC G S     +A  E+   D+   + + V  SLAM  I   GS+EQK ++LP +
Sbjct: 80  HLKGYGCAGMSAVAYGLACLELEAGDSGIRSLVSVQGSLAMYAIHAFGSDEQKDQWLPDM 139
Query: 164 AQLNTIACWALTEPAYGSDASALNTTATKVEGGWILEGQKRWIGNSTFADVLVIFARNTT 223
           A  + I C+ LTEP +GSD + + T AT+    WIL G K WI N + ADV V++AR  T
Sbjct: 140 ASGHRIGCFGLTEPDHGSDPAGMRTRATRSGDDWILTGTKMWITNGSVADVAVVWAR--T 197
Query: 224 TNQINGY 230
              I G+
Sbjct: 198 DEGIRGF 204

>pdb|2EBA|A Chain A, Crystal Structure Of The Putative Glutaryl-coa Dehydrogenase From Thermus Thermophilus Length = 385

Iteration: 1
 Score =  134 bits (336), Expect = 5e-32,   Method: Compositional matrix adjust.
 Identities = 71/177 (40%), Positives = 100/177 (56%), Gaps = 2/177 (1%)
Query: 47  DYYQFDDLLTSEEQAVRMKVRECMEKEIAPIMAEYWEKAEFPFHVIPKLGALRVAGGTIK 106
           D+Y  +DLLT EE+ V+   R  +EKE  P + ++WE+  FP H+IP+   L   G T+ 
Sbjct: 3   DFYALEDLLTPEEKEVQKAARRFLEKEALPHIRDWWEEGVFPTHLIPRFAELGFLGPTLP 62
Query: 107 -GYGCPGHSVTGAAIAIAEIARVDASCSTFILVHSSLAMLTIALCGSEEQKQKYLPSLAQ 165
             YG  G S     +   E+ RVD+   +F+ V SSL M  I   GSEEQK+++LP LA+
Sbjct: 63  PEYGGAGVSSAAYGLICYELERVDSGLRSFVSVQSSLVMYPIYAYGSEEQKREFLPKLAR 122
Query: 166 LNTIACWALTEPAYGSDASALNTTATKVEGG-WILEGQKRWIGNSTFADVLVIFARN 221
              + C+ LTEP  GSD      T  + EG  W+L G K WI N   A + VI+A++
Sbjct: 123 GEMVGCFGLTEPDGGSDPYGNMKTRARREGDTWVLNGTKMWITNGNLAHLAVIWAKD 179

>pdb|3SWO|A Chain A, Crystal Structure Of A Glutaryl-Coa Dehydrogenase From Mycobacterium Smegmatis In Complex With Fadh2 Length = 399

Iteration: 1
 Score =  124 bits (312), Expect = 3e-29,   Method: Compositional matrix adjust.
 Identities = 65/194 (33%), Positives = 104/194 (53%), Gaps = 2/194 (1%)
Query: 37  PASKFPPCASDYYQFDDLLTSEEQAVRMKVRECMEKEIAPIMAEYWEKAEFPFHVIPKLG 96
           P+ K      + +  D LL  +E+ +   VR+ ++  + P +  ++E A  P  +  + G
Sbjct: 8   PSKKSTYAPLELFDTDRLLDQDERDIAATVRQFVDTRLKPNVEGWFESATLPSELAKEFG 67
Query: 97  ALRVAGGTIKGYGCPGHSVTGAAIAIAEIARVDASCSTFILVHSSLAMLTIALCGSEEQK 156
            L V G  ++GYGC G +     +A  E+   D+   +F+ V  SL+M +I   GSEEQK
Sbjct: 68  NLGVLGMHLQGYGCAGTNAVSYGLACMELEAGDSGFRSFVSVQGSLSMFSIYRYGSEEQK 127
Query: 157 QKYLPSLAQLNTIACWALTEPAYGSDASALNTTATKVEGGWILEGQKRWIGNSTFADVLV 216
            ++LP LA  + I C+ LTEP +GS+ + + T A +    WIL G K WI N   ADV  
Sbjct: 128 NEWLPRLAAGDAIGCFGLTEPDFGSNPAGMRTRARRDGSDWILNGTKMWITNGNLADVAT 187
Query: 217 IFARNTTTNQINGY 230
           ++A+  T + I G+
Sbjct: 188 VWAQ--TDDGIRGF 199

>pdb|2R0M|A Chain A, The Effect Of A Glu370asp Mutation In Glutaryl-Coa Dehydrogenase On Proton Transfer To The Dienolate Intermediate Length = 394

Iteration: 1
 Score =  115 bits (287), Expect = 3e-26,   Method: Compositional matrix adjust.
 Identities = 66/172 (38%), Positives = 93/172 (54%), Gaps = 2/172 (1%)
Query: 51  FDDLLTSEEQAVRMKVRECMEKEIAPIMAEYWEKAEFPFHVIPKLGALRVAGGTIKGYGC 110
            ++ LT++E  +R   R   ++ + P +        F   +I ++G L V G TIKGYGC
Sbjct: 12  LEEQLTTDEILIRDTFRTYCQERLMPRILLANRNEVFHREIISEMGELGVLGPTIKGYGC 71
Query: 111 PGHSVTGAAIAIAEIARVDASCSTFILVHSSLAMLTIALCGSEEQKQKYLPSLAQLNTIA 170
            G S     +   E+ RVD+   + + V SSL M  I   GSEEQ+QKYLP LA+   + 
Sbjct: 72  AGVSSVAYGLLARELERVDSGYRSAMSVQSSLVMHPIYAYGSEEQRQKYLPQLAKGELLG 131
Query: 171 CWALTEPAYGSDASALNTTA--TKVEGGWILEGQKRWIGNSTFADVLVIFAR 220
           C+ LTEP  GSD S++ T A        + L G K WI NS  AD+ V++AR
Sbjct: 132 CFGLTEPNSGSDPSSMETRAHYNSSNKSYTLNGTKTWITNSPMADLFVVWAR 183

>pdb|1SIR|A Chain A, The Crystal Structure And Mechanism Of Human Glutaryl-Coa Dehydrogenase Length = 394

Iteration: 1
 Score =  115 bits (287), Expect = 3e-26,   Method: Compositional matrix adjust.
 Identities = 66/172 (38%), Positives = 93/172 (54%), Gaps = 2/172 (1%)
Query: 51  FDDLLTSEEQAVRMKVRECMEKEIAPIMAEYWEKAEFPFHVIPKLGALRVAGGTIKGYGC 110
            ++ LT++E  +R   R   ++ + P +        F   +I ++G L V G TIKGYGC
Sbjct: 12  LEEQLTTDEILIRDTFRTYCQERLMPRILLANRNEVFHREIISEMGELGVLGPTIKGYGC 71
Query: 111 PGHSVTGAAIAIAEIARVDASCSTFILVHSSLAMLTIALCGSEEQKQKYLPSLAQLNTIA 170
            G S     +   E+ RVD+   + + V SSL M  I   GSEEQ+QKYLP LA+   + 
Sbjct: 72  AGVSSVAYGLLARELERVDSGYRSAMSVQSSLVMHPIYAYGSEEQRQKYLPQLAKGELLG 131
Query: 171 CWALTEPAYGSDASALNTTA--TKVEGGWILEGQKRWIGNSTFADVLVIFAR 220
           C+ LTEP  GSD S++ T A        + L G K WI NS  AD+ V++AR
Sbjct: 132 CFGLTEPNSGSDPSSMETRAHYNSSNKSYTLNGTKTWITNSPMADLFVVWAR 183

>pdb|1SIQ|A Chain A, The Crystal Structure And Mechanism Of Human Glutaryl-Coa Dehydrogenase Length = 392

Iteration: 1
 Score =  115 bits (287), Expect = 3e-26,   Method: Compositional matrix adjust.
 Identities = 66/172 (38%), Positives = 93/172 (54%), Gaps = 2/172 (1%)
Query: 51  FDDLLTSEEQAVRMKVRECMEKEIAPIMAEYWEKAEFPFHVIPKLGALRVAGGTIKGYGC 110
            ++ LT++E  +R   R   ++ + P +        F   +I ++G L V G TIKGYGC
Sbjct: 10  LEEQLTTDEILIRDTFRTYCQERLMPRILLANRNEVFHREIISEMGELGVLGPTIKGYGC 69
Query: 111 PGHSVTGAAIAIAEIARVDASCSTFILVHSSLAMLTIALCGSEEQKQKYLPSLAQLNTIA 170
            G S     +   E+ RVD+   + + V SSL M  I   GSEEQ+QKYLP LA+   + 
Sbjct: 70  AGVSSVAYGLLARELERVDSGYRSAMSVQSSLVMHPIYAYGSEEQRQKYLPQLAKGELLG 129
Query: 171 CWALTEPAYGSDASALNTTA--TKVEGGWILEGQKRWIGNSTFADVLVIFAR 220
           C+ LTEP  GSD S++ T A        + L G K WI NS  AD+ V++AR
Sbjct: 130 CFGLTEPNSGSDPSSMETRAHYNSSNKSYTLNGTKTWITNSPMADLFVVWAR 181

>pdb|1WS9|A Chain A, Crystal Structure Of Project Id Tt0172 From Thermus Thermophilus Hb8 Length = 387

Iteration: 1
 Score =  114 bits (285), Expect = 5e-26,   Method: Compositional matrix adjust.
 Identities = 67/166 (40%), Positives = 90/166 (54%), Gaps = 1/166 (0%)
Query: 57  SEEQAVRMKVRECMEKEIAPIMAEYWEKAEFPFHVIPKLGALRVAGGTI-KGYGCPGHSV 115
           +EE+ V    RE ++ E+AP  AE      FP+ ++ KL    V G  + + YG  G S 
Sbjct: 9   AEERQVLGPFREFLKAEVAPGAAERDRTGAFPWDLVRKLAEFGVFGALVPEAYGGAGLST 68
Query: 116 TGAAIAIAEIARVDASCSTFILVHSSLAMLTIALCGSEEQKQKYLPSLAQLNTIACWALT 175
              A  +  IA  D + +  +  H+SLA   I L GSE QK+ +LP LA    +  W LT
Sbjct: 69  RLFARMVEAIAYYDGALALTVASHNSLATGHILLAGSEAQKEAFLPKLASGEALGAWGLT 128
Query: 176 EPAYGSDASALNTTATKVEGGWILEGQKRWIGNSTFADVLVIFARN 221
           EP  GSDA+AL T A KVEGGW L G K++I   + A V V+ AR 
Sbjct: 129 EPGSGSDAAALKTKAEKVEGGWRLNGTKQFITQGSVAGVYVVMART 174

>pdb|3GQT|A Chain A, Crystal Structure Of Glutaryl-Coa Dehydrogenase From Burkholderia Pseudomallei With Fragment (1,4-Dimethyl-1,2,3,4- Tetrahydroquinoxalin-6-Yl)methylamine Length = 399

Iteration: 1
 Score =  111 bits (277), Expect = 4e-25,   Method: Compositional matrix adjust.
 Identities = 66/188 (35%), Positives = 98/188 (52%), Gaps = 3/188 (1%)
Query: 46  SDYYQFDDLLTSEEQAVRMKVRECMEKEIAPIMAEYWEKAEFPFHVIPKLGALRVAGGTI 105
            D    D  L  +E+ VR       + ++AP + E +        +  ++G + + G TI
Sbjct: 13  DDPLLLDQQLADDERMVRDAAHAYAQGKLAPRVTEAFRHETTDAAIFREMGEIGLLGPTI 72
Query: 106 -KGYGCPGHSVTGAAIAIAEIARVDASCSTFILVHSSLAMLTIALCGSEEQKQKYLPSLA 164
            + YG PG       +   E+ RVD+   + + V SSL M+ I   GS+ QK+KYLP LA
Sbjct: 73  PEQYGGPGLDYVSYGLIAREVERVDSGYRSMMSVQSSLVMVPIFEFGSDAQKEKYLPKLA 132
Query: 165 QLNTIACWALTEPAYGSDASALNTTATKVEGGWILEGQKRWIGNSTFADVLVIFAR--NT 222
               I C+ LTEP +GSD  ++ T A KV GG+ L G K WI NS  ADV V++A+    
Sbjct: 133 TGEWIGCFGLTEPNHGSDPGSMVTRARKVPGGYSLSGSKMWITNSPIADVFVVWAKLDED 192
Query: 223 TTNQINGY 230
             ++I G+
Sbjct: 193 GRDEIRGF 200

>pdb|3EOM|A Chain A, 2.4 A Crystal Structure Of Native Glutaryl-Coa Dehydrogenase From Burkholderia Pseudomallei Length = 396

Iteration: 1
 Score =  111 bits (277), Expect = 4e-25,   Method: Compositional matrix adjust.
 Identities = 66/188 (35%), Positives = 98/188 (52%), Gaps = 3/188 (1%)
Query: 46  SDYYQFDDLLTSEEQAVRMKVRECMEKEIAPIMAEYWEKAEFPFHVIPKLGALRVAGGTI 105
            D    D  L  +E+ VR       + ++AP + E +        +  ++G + + G TI
Sbjct: 10  DDPLLLDQQLADDERMVRDAAHAYAQGKLAPRVTEAFRHETTDAAIFREMGEIGLLGPTI 69
Query: 106 -KGYGCPGHSVTGAAIAIAEIARVDASCSTFILVHSSLAMLTIALCGSEEQKQKYLPSLA 164
            + YG PG       +   E+ RVD+   + + V SSL M+ I   GS+ QK+KYLP LA
Sbjct: 70  PEQYGGPGLDYVSYGLIAREVERVDSGYRSMMSVQSSLVMVPIFEFGSDAQKEKYLPKLA 129
Query: 165 QLNTIACWALTEPAYGSDASALNTTATKVEGGWILEGQKRWIGNSTFADVLVIFAR--NT 222
               I C+ LTEP +GSD  ++ T A KV GG+ L G K WI NS  ADV V++A+    
Sbjct: 130 TGEWIGCFGLTEPNHGSDPGSMVTRARKVPGGYSLSGSKMWITNSPIADVFVVWAKLDED 189
Query: 223 TTNQINGY 230
             ++I G+
Sbjct: 190 GRDEIRGF 197

>pdb|3D6B|A Chain A, 2.2 A Crystal Structure Of Glutaryl-Coa Dehydrogenase From Burkholderia Pseudomallei Length = 395

Iteration: 1
 Score =  111 bits (277), Expect = 5e-25,   Method: Compositional matrix adjust.
 Identities = 66/188 (35%), Positives = 98/188 (52%), Gaps = 3/188 (1%)
Query: 46  SDYYQFDDLLTSEEQAVRMKVRECMEKEIAPIMAEYWEKAEFPFHVIPKLGALRVAGGTI 105
            D    D  L  +E+ VR       + ++AP + E +        +  ++G + + G TI
Sbjct: 9   DDPLLLDQQLADDERMVRDAAHAYAQGKLAPRVTEAFRHETTDAAIFREMGEIGLLGPTI 68
Query: 106 -KGYGCPGHSVTGAAIAIAEIARVDASCSTFILVHSSLAMLTIALCGSEEQKQKYLPSLA 164
            + YG PG       +   E+ RVD+   + + V SSL M+ I   GS+ QK+KYLP LA
Sbjct: 69  PEQYGGPGLDYVSYGLIAREVERVDSGYRSMMSVQSSLVMVPIFEFGSDAQKEKYLPKLA 128
Query: 165 QLNTIACWALTEPAYGSDASALNTTATKVEGGWILEGQKRWIGNSTFADVLVIFAR--NT 222
               I C+ LTEP +GSD  ++ T A KV GG+ L G K WI NS  ADV V++A+    
Sbjct: 129 TGEWIGCFGLTEPNHGSDPGSMVTRARKVPGGYSLSGSKMWITNSPIADVFVVWAKLDED 188
Query: 223 TTNQINGY 230
             ++I G+
Sbjct: 189 GRDEIRGF 196

>pdb|1JQI|A Chain A, Crystal Structure Of Rat Short Chain Acyl-Coa Dehydrogenase Complexed With Acetoacetyl-Coa Length = 388

Iteration: 1
 Score = 94.7 bits (234), Expect = 3e-20,   Method: Compositional matrix adjust.
 Identities = 60/176 (34%), Positives = 90/176 (51%), Gaps = 1/176 (0%)
Query: 55  LTSEEQAVRMKVRECMEKEIAPIMAEYWEKAEFPFHVIPKLGALRVAGGTI-KGYGCPGH 113
           L    Q +R   R+  EKE+ PI A+  ++  FP   + K+G L +    + +     G 
Sbjct: 10  LPETHQMLRQTCRDFAEKELVPIAAQLDKEHLFPTSQVKKMGELGLLAMDVPEELSGAGL 69
Query: 114 SVTGAAIAIAEIARVDASCSTFILVHSSLAMLTIALCGSEEQKQKYLPSLAQLNTIACWA 173
                +IA+ EI+R  AS    + V++SL +  I   GS +QKQ+++      + I C+A
Sbjct: 70  DYLAYSIALEEISRGCASTGVIMSVNNSLYLGPILKFGSSQQKQQWITPFTNGDKIGCFA 129
Query: 174 LTEPAYGSDASALNTTATKVEGGWILEGQKRWIGNSTFADVLVIFARNTTTNQING 229
           L+EP  GSDA A +TTA +    W+L G K WI NS  A   V+FA    + Q  G
Sbjct: 130 LSEPGNGSDAGAASTTAREEGDSWVLNGTKAWITNSWEASATVVFASTDRSRQNKG 185

>pdb|3PFD|A Chain A, Crystal Structure Of An Acyl-Coa Dehydrogenase From Mycobacterium Thermoresistibile Bound To Reduced Flavin Adenine Dinucleotide Solved By Combined Iodide Ion Sad Mr Length = 393

Iteration: 1
 Score = 94.4 bits (233), Expect = 6e-20,   Method: Compositional matrix adjust.
 Identities = 68/183 (37%), Positives = 93/183 (50%), Gaps = 11/183 (6%)
Query: 55  LTSEEQAVRMKVRECMEKEIAPIMAEYWEKAEFPFHVIPKLGALRVAGGTI----KGYGC 110
           L  E  A+R  +R   EKEIAP  AE  EKA FP      L AL  +G +     + YG 
Sbjct: 19  LPEEHIALREAIRALAEKEIAPYAAEVDEKARFPEEA---LAALNSSGFSAIHVPEEYGG 75
Query: 111 PGHSVTGAAIAIAEIARVDASCSTFILVHSSLAMLTIALCGSEEQKQKYLPSLAQLNTIA 170
            G       I I E+ARVD S S    V+  L  + + L GSEE K++ LP++A    +A
Sbjct: 76  QGADSVATCIVIEEVARVDCSASLIPAVNK-LGTMGLILRGSEELKKQVLPAVASGEAMA 134
Query: 171 CWALTEPAYGSDASALNTTATKVEGGWILEGQKRWI---GNSTFADVLVIFARNTTTNQI 227
            +AL+E   GSDA+++ T A      WIL G K WI   G ST+  V+ +   +   N I
Sbjct: 135 SYALSEREAGSDAASMRTRAVADGDDWILNGSKCWITNGGKSTWYTVMAVTDPDKGANGI 194
Query: 228 NGY 230
           + +
Sbjct: 195 SAF 197

>pdb|3OWA|A Chain A, Crystal Structure Of Acyl-Coa Dehydrogenase Complexed With Fad From Bacillus Anthracis Length = 597

Iteration: 1
 Score = 91.3 bits (225), Expect = 4e-19,   Method: Compositional matrix adjust.
 Identities = 60/171 (35%), Positives = 91/171 (53%), Gaps = 7/171 (4%)
Query: 55  LTSEEQAVRMKVRECMEKEIAPIMAEYWEKAEF--PFHVIPKLGALRVAGGTI-KGYGCP 111
            +SE + +     + +  E+ P + EY E+ EF     ++ + G L + G  + + YG  
Sbjct: 33  FSSEHKXIAKTTEDFIVNEVLPEL-EYLEQHEFDRSVRLLKEAGELGLLGADVPEEYGGI 91
Query: 112 GHSVTGAAIAIAEIARVDASCSTFILVHSSLAMLTIALCGSEEQKQKYLPSLAQLNTIAC 171
           G     +A+   + +R      T    H  +  L I L G+EEQK+KYLP LA    +A 
Sbjct: 92  GLDKVSSALIAEKFSRAGGFAITH-GAHVGIGSLPIVLFGNEEQKKKYLPLLATGEKLAA 150
Query: 172 WALTEPAYGSDASALNTTAT-KVEGG-WILEGQKRWIGNSTFADVLVIFAR 220
           +ALTEP  GSDA    TTA    EG  ++L G+K+WI NS FADV +++A+
Sbjct: 151 YALTEPGSGSDALGAKTTARLNAEGTHYVLNGEKQWITNSAFADVFIVYAK 201

>pdb|2VIG|A Chain A, Crystal Structure Of Human Short-Chain Acyl Coa Dehydrogenase Length = 391

Iteration: 1
 Score = 90.1 bits (222), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 64/187 (34%), Positives = 93/187 (49%), Gaps = 6/187 (3%)
Query: 55  LTSEEQAVRMKVRECMEKEIAPIMAEYWEKAEFPFHVIPKLGALRVAGGTI-KGYGCPGH 113
           L    Q +    R+  EKE+ PI A+  ++  FP   + K+G L +    + +  G  G 
Sbjct: 6   LPETHQMLLQTCRDFAEKELFPIAAQVDKEHLFPAAQVKKMGGLGLLAMDVPEELGGAGL 65
Query: 114 SVTGAAIAIAEIARVDASCSTFILVHSSLAMLTIALCGSEEQKQKYLPSLAQLNTIACWA 173
                AIA+ EI+R  AS    + V++SL +  I   GS+EQKQ ++      + I C+A
Sbjct: 66  DYLAYAIAMEEISRGCASTGVIMSVNNSLYLGPILKFGSKEQKQAWVTPFTSGDKIGCFA 125
Query: 174 LTEPAYGSDASALNTTATKVEGGWILEGQKRWIGNSTFADVLVIFARNTTTNQINGYANQ 233
           L+EP  GSDA A +TTA      W+L G K WI N+  A   V+FA      Q     N+
Sbjct: 126 LSEPGNGSDAGAASTTARAEGDSWVLNGTKAWITNAWEASAAVVFASTDRALQ-----NK 180
Query: 234 SIKFVLL 240
           SI   L+
Sbjct: 181 SISAFLV 187

>pdb|1UKW|A Chain A, Crystal Structure Of Medium-Chain Acyl-Coa Dehydrogenase From Thermus Thermophilus Hb8 Length = 379

Iteration: 1
 Score = 88.6 bits (218), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 59/170 (34%), Positives = 90/170 (52%), Gaps = 2/170 (1%)
Query: 51  FDDLLTSEEQAVRMKVRECMEKEIAPIMAEYWEKAEFPFHVIPKLGALRVAGGTI-KGYG 109
            D  LT E++ ++   R   ++ I P+  EY EK E P+ VI KL  + +    I + YG
Sbjct: 1   IDFSLTEEQRQLQALARRFAKEVILPVAQEYDEKEEVPWPVIEKLHEVGLLNAIIPEEYG 60
Query: 110 CPGHSVTGAAIAIAEIARVDASCSTFILVHSSLAMLTIALCGSEEQKQKYLPSLAQLNTI 169
             G  +    I   E+A       T I + S L +  + L G+EEQK+++L  L +   +
Sbjct: 61  GMGLKMLDEVIVGEELAYACMGIYT-IPMASDLGITPVLLAGTEEQKERFLRPLTEKPAL 119
Query: 170 ACWALTEPAYGSDASALNTTATKVEGGWILEGQKRWIGNSTFADVLVIFA 219
           A +AL+EP  GSDA+AL T A +    ++L G K WI N   A+ +V+FA
Sbjct: 120 AAFALSEPGNGSDAAALKTRAIRQGDHYVLNGTKMWISNGGEAEWVVVFA 169

>pdb|3NF4|A Chain A, Crystal Structure Of Acyl-Coa Dehydrogenase From Mycobacterium Thermoresistibile Bound To Flavin Adenine Dinucleotide Length = 387

Iteration: 1
 Score = 85.5 bits (210), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 61/187 (32%), Positives = 96/187 (51%), Gaps = 8/187 (4%)
Query: 37  PASKFPPCASDYYQFDDLLTSEEQAVRMKV-RECMEKEIAPIMAEYWEKAEFPFHVIPKL 95
           P S   P A      D LL S+E A  +++ RE  +K + PI+  + +   +P  V  +L
Sbjct: 2   PGSMIHPMA-----VDRLLPSQEAAELIELTREIADKVLDPIVDRHEKDETYPEGVFEQL 56
Query: 96  GALRVAG-GTIKGYGCPGHSVTGAAIAIAEIARVDASCSTFILVHSSLAMLTIALCGSEE 154
           GA  +      + +G  G         + EIA   AS +  + VHS L+   + + G+EE
Sbjct: 57  GAAGLLSLPQPEEWGGGGQPYEVYLQVLEEIAARWASVAVAVSVHS-LSSHPLLVFGTEE 115
Query: 155 QKQKYLPSLAQLNTIACWALTEPAYGSDASALNTTATKVEGGWILEGQKRWIGNSTFADV 214
           QK+++LP +     I  ++L+EP  GSDA+AL   AT  +GG+++ G K WI +   AD 
Sbjct: 116 QKKRWLPGMLSGEQIGAYSLSEPQAGSDAAALRCAATPTDGGYVINGSKSWITHGGKADF 175
Query: 215 LVIFARN 221
             +FAR 
Sbjct: 176 YTLFART 182

>pdb|2DVL|A Chain A, Crystal Structure Of Project Tt0160 From Thermus Thermophilus Hb8 Length = 372

Iteration: 1
 Score = 84.7 bits (208), Expect = 4e-17,   Method: Compositional matrix adjust.
 Identities = 60/168 (35%), Positives = 90/168 (53%), Gaps = 1/168 (0%)
Query: 55  LTSEEQAVRMKVRECMEKEIAPIMAEYWEKAEFPFHVIPKLGALRVAGGTI-KGYGCPGH 113
           LT E++ V   VR    + + P+  EY  KAE+P+  +  L  L + G T  + +G  G 
Sbjct: 3   LTQEQRLVLDAVRRVAREVLYPLAPEYDRKAEYPWPQLKALAELGLLGMTTPEEWGGVGL 62
Query: 114 SVTGAAIAIAEIARVDASCSTFILVHSSLAMLTIALCGSEEQKQKYLPSLAQLNTIACWA 173
                A+A+ E+A  D S +  + V S L    +   GSE QK++YL  LA+   I  + 
Sbjct: 63  DSVTWALALEELAAADPSVAVIVSVTSGLPQYMLLRFGSEAQKRRYLVPLARGEWIGAFC 122
Query: 174 LTEPAYGSDASALNTTATKVEGGWILEGQKRWIGNSTFADVLVIFARN 221
           LTEP  GSDA +L   A +V+GG++L G K WI ++  A + V+ AR 
Sbjct: 123 LTEPQAGSDAKSLRAEARRVKGGFVLNGVKSWITSAGHAHLYVVMART 170

>pdb|2JIF|A Chain A, Structure Of Human Short-Branched Chain Acyl-Coa Dehydrogenase (Acadsb) Length = 404

Iteration: 1
 Score = 82.4 bits (202), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 52/166 (31%), Positives = 85/166 (51%), Gaps = 2/166 (1%)
Query: 55  LTSEEQAVRMKVRECMEKEIAPIMAEYWEKAEFPFHVIPKLGALRVAGGTIK-GYGCPGH 113
            T EE  ++  V++  +++IAP+++   E ++    VI  L    + G  +   YG  G 
Sbjct: 29  FTDEEMMIKSSVKKFAQEQIAPLVSTMDENSKMEKSVIQGLFQQGLMGIEVDPEYGGTGA 88
Query: 114 SVTGAAIAIAEIARVDASCSTFILVHSSLAMLTIALCGSEEQKQKYLPSLAQLNTIACWA 173
           S     + I E+A+VDAS + F  + ++L    I   G+EEQK  YLP L     +  + 
Sbjct: 89  SFLSTVLVIEELAKVDASVAVFCEIQNTLINTLIRKHGTEEQKATYLPQLTT-EKVGSFC 147
Query: 174 LTEPAYGSDASALNTTATKVEGGWILEGQKRWIGNSTFADVLVIFA 219
           L+E   GSD+ AL T A K    ++L G K WI ++  A + ++ A
Sbjct: 148 LSEAGAGSDSFALKTRADKEGDYYVLNGSKMWISSAEHAGLFLVMA 193

>pdb|3MPI|A Chain A, Structure Of The Glutaryl-Coenzyme A Dehydrogenase Glutaryl-Coa Complex Length = 397

Iteration: 1
 Score = 81.3 bits (199), Expect = 4e-16,   Method: Compositional matrix adjust.
 Identities = 54/169 (31%), Positives = 84/169 (49%), Gaps = 4/169 (2%)
Query: 55  LTSEEQAVRMKVRECMEKEIAPIMAEYWEKAEFPFH-VIPKLGALRVAGGTI-KGYGCPG 112
           L+ E Q ++ +VR  + K+I P   ++  +  FP+   +  +G L   G  I + YG  G
Sbjct: 5   LSKELQMLQKEVRNFVNKKIVPFADQWDNENHFPYEEAVRPMGELGFFGTVIPEEYGGEG 64
Query: 113 --HSVTGAAIAIAEIARVDASCSTFILVHSSLAMLTIALCGSEEQKQKYLPSLAQLNTIA 170
                  A I   EIAR  ++    + +       TI   GSE  K+KY+P L+    + 
Sbjct: 65  MDQGWLAAMIVTEEIARGSSALRVQLNMEVLGCAYTILTYGSEALKKKYVPKLSSAEFLG 124
Query: 171 CWALTEPAYGSDASALNTTATKVEGGWILEGQKRWIGNSTFADVLVIFA 219
            + +TEP  GSD  A+++TA      W+L G K WI N+  ADVL+ +A
Sbjct: 125 GFGITEPDAGSDVMAMSSTAEDKGDHWLLNGSKTWISNAAQADVLIYYA 173

>pdb|1IVH|A Chain A, Structure Of Human Isovaleryl-coa Dehydrogenase At 2.6 Angstroms Resolution: Structural Basis For Substrate Specificity Length = 394

Iteration: 1
 Score = 80.5 bits (197), Expect = 9e-16,   Method: Compositional matrix adjust.
 Identities = 53/169 (31%), Positives = 82/169 (48%), Gaps = 3/169 (1%)
Query: 55  LTSEEQAVRMKVRECMEKEIAPIMAEYWEKAEFP--FHVIPKLGALRVAGGTIK-GYGCP 111
           L+ E++ +R  + + +++ +AP   E     EF        +LG L V G T    YG  
Sbjct: 13  LSEEQRQLRQTMAKFLQEHLAPKAQEIDRSNEFKNLREFWKQLGNLGVLGITAPVQYGGS 72
Query: 112 GHSVTGAAIAIAEIARVDASCSTFILVHSSLAMLTIALCGSEEQKQKYLPSLAQLNTIAC 171
           G       + + EI+R   +       HS+L +  +   G+E QK+KYLP L     I  
Sbjct: 73  GLGYLEHVLVMEEISRASGAVGLSYGAHSNLCINQLVRNGNEAQKEKYLPKLISGEYIGA 132
Query: 172 WALTEPAYGSDASALNTTATKVEGGWILEGQKRWIGNSTFADVLVIFAR 220
            A++EP  GSD  ++   A K    +IL G K WI N   ADVL+++A+
Sbjct: 133 LAMSEPNAGSDVVSMKLKAEKKGNHYILNGNKFWITNGPDADVLIVYAK 181

>pdb|1RX0|A Chain A, Crystal Structure Of Isobutyryl-Coa Dehydrogenase Complexed With SubstrateLIGAND. Length = 393

Iteration: 1
 Score = 79.3 bits (194), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 55/166 (33%), Positives = 86/166 (51%), Gaps = 3/166 (1%)
Query: 57  SEEQAVRMKVR-ECMEKEIAPIMAEYWEKAEFPFHVIPKLGALRVAGGTIK-GYGCPGHS 114
           +EEQ    KV  +   +E+AP MAE+ +K  FP  V+ K   L   G  I+   G  G S
Sbjct: 20  NEEQKEFQKVAFDFAAREMAPNMAEWDQKELFPVDVMRKAAQLGFGGVYIQTDVGGSGLS 79
Query: 115 VTGAAIAIAEIARVDASCSTFILVHSSLAMLTIALCGSEEQKQKYLPSLAQLNTIACWAL 174
               ++    +A    S + +I +H+  A +  +  G+EEQ+ K+ P L  +   A + L
Sbjct: 80  RLDTSVIFEALATGCTSTTAYISIHNMCAWMIDSF-GNEEQRHKFCPPLCTMEKFASYCL 138
Query: 175 TEPAYGSDASALNTTATKVEGGWILEGQKRWIGNSTFADVLVIFAR 220
           TEP  GSDA++L T+A K    +IL G K +I  +  +D+ V+  R
Sbjct: 139 TEPGSGSDAASLLTSAKKQGDHYILNGSKAFISGAGESDIYVVMCR 184

>pdb|2Z1Q|A Chain A, Crystal Structure Of Acyl Coa Dehydrogenase Length = 577

Iteration: 1
 Score = 78.6 bits (192), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 56/159 (35%), Positives = 83/159 (52%), Gaps = 7/159 (4%)
Query: 67  RECMEKEIAPIMAEYWEKAEFPFHV--IPKLGALRVAGGTI-KGYGCPGHSVTGAAIAIA 123
           R  +E+E+ P++ E  E  E   +V  + K G L +    + + YG        + +   
Sbjct: 40  RTFVEREVLPLL-ERMEHGELELNVPLMRKAGELGLLAIDVPEEYGGLDLPKVISTVVAE 98
Query: 124 EIARVDASCSTFILVHSSLAMLTIALCGSEEQKQKYLPSLAQLNTIACWALTEPAYGSDA 183
           E++       T+   H+S+  L +   G+EEQK+KYLP LA    IA + LTEP  GSDA
Sbjct: 99  ELSGSGGFSVTYG-AHTSIGTLPLVYFGTEEQKRKYLPKLASGEWIAAYCLTEPGSGSDA 157
Query: 184 SALNTTATKVEGG--WILEGQKRWIGNSTFADVLVIFAR 220
            A  T AT  E G  +IL G K+WI N+ FA +  +FA+
Sbjct: 158 LAAKTRATLSEDGKHYILNGVKQWISNAGFAHLFTVFAK 196

>pdb|3B96|A Chain A, Structural Basis For Substrate Fatty-Acyl Chain Specificity: Crystal Structure Of Human Very-Long-Chain Acyl-Coa Dehydrogenase Length = 587

Iteration: 1
 Score = 76.6 bits (187), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 40/109 (36%), Positives = 58/109 (53%), Gaps = 2/109 (1%)
Query: 129 DASCSTFILVHSSLAMLTIALCGSEEQKQKYLPSLAQLNTIACWALTEPAYGSDASALNT 188
           D      +  H S+    I L G++ QK+KYLP LA   T+A + LTEP+ GSDA+++ T
Sbjct: 103 DLGVGITLGAHQSIGFKGILLFGTKAQKEKYLPKLASGETVAAFCLTEPSSGSDAASIRT 162
Query: 189 TATKVEGG--WILEGQKRWIGNSTFADVLVIFARNTTTNQINGYANQSI 235
           +A     G  + L G K WI N   AD+  +FA+   T+   G   + I
Sbjct: 163 SAVPSPCGKYYTLNGSKLWISNGGLADIFTVFAKTPVTDPATGAVKEKI 211

>pdb|2UXW|A Chain A, Crystal Structure Of Human Very Long Chain Acyl-coa Dehydrogenase (acadvl) Length = 607

Iteration: 1
 Score = 76.6 bits (187), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 40/109 (36%), Positives = 58/109 (53%), Gaps = 2/109 (1%)
Query: 129 DASCSTFILVHSSLAMLTIALCGSEEQKQKYLPSLAQLNTIACWALTEPAYGSDASALNT 188
           D      +  H S+    I L G++ QK+KYLP LA   T+A + LTEP+ GSDA+++ T
Sbjct: 123 DLGVGITLGAHQSIGFKGILLFGTKAQKEKYLPKLASGETVAAFCLTEPSSGSDAASIRT 182
Query: 189 TATKVEGG--WILEGQKRWIGNSTFADVLVIFARNTTTNQINGYANQSI 235
           +A     G  + L G K WI N   AD+  +FA+   T+   G   + I
Sbjct: 183 SAVPSPCGKYYTLNGSKLWISNGGLADIFTVFAKTPVTDPATGAVKEKI 231

>pdb|1UDY|A Chain A, Medium-Chain Acyl-Coa Dehydrogenase With 3-Thiaoctanoyl-Coa Length = 396

Iteration: 1
 Score = 71.6 bits (174), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 51/192 (26%), Positives = 91/192 (47%), Gaps = 12/192 (6%)
Query: 31  AFPQATPASKFPPCASDYYQFDDLLTSEEQAVRMKVRECMEKEIAPIMAEYWEKAEFPFH 90
           A PQ  P S F         F+  LT +++  +   R+   +EI P+ AEY    E+P  
Sbjct: 2   AVPQCEPGSGF--------SFE--LTEQQKEFQATARKFAREEIIPVAAEYDRTGEYPVP 51
Query: 91  VIPKLGALRVAGGTI-KGYGCPGHSVTGAAIAIAEIARVDASCSTFILVHSSLAMLTIAL 149
           ++ +   L +    I + +G  G  +  + +   E+A       T I  ++ L  + + +
Sbjct: 52  LLKRAWELGLMNTHIPESFGGLGLGIIDSCLITEELAYGCTGVQTAIEANT-LGQVPLII 110
Query: 150 CGSEEQKQKYLPSLAQLNTIACWALTEPAYGSDASALNTTATKVEGGWILEGQKRWIGNS 209
            G+ +Q++KYL  + +   +  + +TEP  GSD + + T A K    +I+ GQK WI N 
Sbjct: 111 GGNYQQQKKYLGRMTEEPLMCAYCVTEPGAGSDVAGIKTKAEKKGDEYIINGQKMWITNG 170
Query: 210 TFADVLVIFARN 221
             A+   + AR+
Sbjct: 171 GKANWYFLLARS 182

>pdb|2A1T|A Chain A, Structure Of The Human Mcad:etf E165betaa Complex Length = 421

Iteration: 1
 Score = 70.5 bits (171), Expect = 8e-13,   Method: Compositional matrix adjust.
 Identities = 48/168 (28%), Positives = 82/168 (48%), Gaps = 2/168 (1%)
Query: 55  LTSEEQAVRMKVRECMEKEIAPIMAEYWEKAEFPFHVIPKLGALRVAGGTI-KGYGCPGH 113
            T +++  +   R+   +EI P+ AEY +  E+P  +I +   L +    I +  G  G 
Sbjct: 41  FTEQQKEFQATARKFAREEIIPVAAEYDKTGEYPVPLIRRAWELGLMNTHIPENCGGLGL 100
Query: 114 SVTGAAIAIAEIARVDASCSTFILVHSSLAMLTIALCGSEEQKQKYLPSLAQLNTIACWA 173
               A +   E+A       T I   +SL  + I + G+++QK+KYL  + +   +  + 
Sbjct: 101 GTFDACLISEELAYGCTGVQTAI-EGNSLGQMPIIIAGNDQQKKKYLGRMTEEPLMCAYC 159
Query: 174 LTEPAYGSDASALNTTATKVEGGWILEGQKRWIGNSTFADVLVIFARN 221
           +TEP  GSD + + T A K    +I+ GQK WI N   A+   + AR+
Sbjct: 160 VTEPGAGSDVAGIKTKAEKKGDEYIINGQKMWITNGGKANWYFLLARS 207

>pdb|1EGD|A Chain A, Structure Of T255e, E376g Mutant Of Human Medium Chain Acyl- Coa Dehydrogenase Length = 396

Iteration: 1
 Score = 70.5 bits (171), Expect = 9e-13,   Method: Compositional matrix adjust.
 Identities = 48/168 (28%), Positives = 82/168 (48%), Gaps = 2/168 (1%)
Query: 55  LTSEEQAVRMKVRECMEKEIAPIMAEYWEKAEFPFHVIPKLGALRVAGGTI-KGYGCPGH 113
            T +++  +   R+   +EI P+ AEY +  E+P  +I +   L +    I +  G  G 
Sbjct: 16  FTEQQKEFQATARKFAREEIIPVAAEYDKTGEYPVPLIRRAWELGLMNTHIPENCGGLGL 75
Query: 114 SVTGAAIAIAEIARVDASCSTFILVHSSLAMLTIALCGSEEQKQKYLPSLAQLNTIACWA 173
               A +   E+A       T I   +SL  + I + G+++QK+KYL  + +   +  + 
Sbjct: 76  GTFDACLISEELAYGCTGVQTAI-EGNSLGQMPIIIAGNDQQKKKYLGRMTEEPLMCAYC 134
Query: 174 LTEPAYGSDASALNTTATKVEGGWILEGQKRWIGNSTFADVLVIFARN 221
           +TEP  GSD + + T A K    +I+ GQK WI N   A+   + AR+
Sbjct: 135 VTEPGAGSDVAGIKTKAEKKGDEYIINGQKMWITNGGKANWYFLLARS 182

>pdb|1EGE|A Chain A, Structure Of T255e, E376g Mutant Of Human Medium Chain Acyl- Coa Dehydrogenase Length = 396

Iteration: 1
 Score = 70.5 bits (171), Expect = 9e-13,   Method: Compositional matrix adjust.
 Identities = 48/168 (28%), Positives = 82/168 (48%), Gaps = 2/168 (1%)
Query: 55  LTSEEQAVRMKVRECMEKEIAPIMAEYWEKAEFPFHVIPKLGALRVAGGTI-KGYGCPGH 113
            T +++  +   R+   +EI P+ AEY +  E+P  +I +   L +    I +  G  G 
Sbjct: 16  FTEQQKEFQATARKFAREEIIPVAAEYDKTGEYPVPLIRRAWELGLMNTHIPENCGGLGL 75
Query: 114 SVTGAAIAIAEIARVDASCSTFILVHSSLAMLTIALCGSEEQKQKYLPSLAQLNTIACWA 173
               A +   E+A       T I   +SL  + I + G+++QK+KYL  + +   +  + 
Sbjct: 76  GTFDACLISEELAYGCTGVQTAI-EGNSLGQMPIIIAGNDQQKKKYLGRMTEEPLMCAYC 134
Query: 174 LTEPAYGSDASALNTTATKVEGGWILEGQKRWIGNSTFADVLVIFARN 221
           +TEP  GSD + + T A K    +I+ GQK WI N   A+   + AR+
Sbjct: 135 VTEPGAGSDVAGIKTKAEKKGDEYIINGQKMWITNGGKANWYFLLARS 182

>pdb|2PG0|A Chain A, Crystal Structure Of Acyl-Coa Dehydrogenase From Geobacillus Kaustophilus Length = 385

Iteration: 1
 Score = 69.7 bits (169), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 53/171 (30%), Positives = 79/171 (46%), Gaps = 16/171 (9%)
Query: 55  LTSEEQAVRMKVRECMEKEIAPIMAEYWEKAEFPFHVIPKLGALRVAGGTIKGYGCP--- 111
           L  E    R   R+ +EKE  P   ++ ++   P     K+G          G+ CP   
Sbjct: 10  LREEHHMFRAAFRKFLEKEAYPHYNDWEKRGIIPRSFWAKMGE--------NGFLCPWVD 61
Query: 112 ----GHSVTGA-AIAIAEIARVDASCSTFILVHSSLAMLTIALCGSEEQKQKYLPSLAQL 166
               G +   A ++ I E      S    I +H+ +    IA  G+EEQKQK+LP     
Sbjct: 62  EKYGGLNADFAYSVVINEELEKVGSSLVGIGLHNDIVTPYIASYGTEEQKQKWLPKCVTG 121
Query: 167 NTIACWALTEPAYGSDASALNTTATKVEGGWILEGQKRWIGNSTFADVLVI 217
             I   A+TEP  GSD + ++TTA K    +I+ GQK +I N   AD++V+
Sbjct: 122 ELITAIAMTEPGAGSDLANISTTAVKDGDYYIVNGQKTFITNGIHADLIVV 172

>pdb|3MDD|A Chain A, Crystal Structures Of Medium Chain Acyl-Coa Dehydrogenase From Pig Liver Mitochondria With And Without Substrate Length = 385

Iteration: 1
 Score = 68.6 bits (166), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 44/168 (26%), Positives = 83/168 (49%), Gaps = 2/168 (1%)
Query: 55  LTSEEQAVRMKVRECMEKEIAPIMAEYWEKAEFPFHVIPKLGALRVAGGTI-KGYGCPGH 113
           LT +++  +   R+   +EI P+ AEY    E+P  ++ +   L +    I + +G  G 
Sbjct: 6   LTEQQKEFQATARKFAREEIIPVAAEYDRTGEYPVPLLKRAWELGLMNTHIPESFGGLGL 65
Query: 114 SVTGAAIAIAEIARVDASCSTFILVHSSLAMLTIALCGSEEQKQKYLPSLAQLNTIACWA 173
            +  + +   E+A       T I  ++ L  + + + G+ +Q++KYL  + +   +  + 
Sbjct: 66  GIIDSCLITEELAYGCTGVQTAIEANT-LGQVPLIIGGNYQQQKKYLGRMTEEPLMCAYC 124
Query: 174 LTEPAYGSDASALNTTATKVEGGWILEGQKRWIGNSTFADVLVIFARN 221
           +TEP  GSD + + T A K    +I+ GQK WI N   A+   + AR+
Sbjct: 125 VTEPGAGSDVAGIKTKAEKKGDEYIINGQKMWITNGGKANWYFLLARS 172

>pdb|1BUC|A Chain A, Three-Dimensional Structure Of Butyryl-Coa Dehydrogenase From Megasphaera Elsdenii Length = 383

Iteration: 1
 Score = 67.8 bits (164), Expect = 5e-12,   Method: Compositional matrix adjust.
 Identities = 54/170 (31%), Positives = 84/170 (49%), Gaps = 5/170 (2%)
Query: 55  LTSEEQAVRMKVRECMEKEIAPIMAEYWEKAEFPFHVIPKLGALRVAGGTIK----GYGC 110
           LT  +Q       +  EK++AP + E   K  +   +I +L +L + G   +    G G 
Sbjct: 5   LTDIQQDFLKLAHDFGEKKLAPTVTERDHKGIYDKELIDELLSLGITGAYFEEKYGGSGD 64
Query: 111 PGHSVTGAAIAIAEIARVDASCSTFILVHSSLAMLTIALCGSEEQKQKYLPSLAQLNTIA 170
            G  V    +A+ E+A+ DA  +  +    SL    I   G+E QK+K+L  L +   + 
Sbjct: 65  DGGDVLSYILAVEELAKYDAGVAITLSATVSLCANPIWQFGTEAQKEKFLVPLVEGTKLG 124
Query: 171 CWALTEPAYGSDASALNTTATKVEGG-WILEGQKRWIGNSTFADVLVIFA 219
            + LTEP  G+DAS   T ATK + G + L G K +I N   AD+ ++FA
Sbjct: 125 AFGLTEPNAGTDASGQQTIATKNDDGTYTLNGSKIFITNGGAADIYIVFA 174

>pdb|3R7K|A Chain A, Crystal Structure Of A Probable Acyl Coa Dehydrogenase From Mycobacterium Abscessus Atcc 19977 DSM 44196 Length = 403

Iteration: 1
 Score = 53.1 bits (126), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 49/173 (28%), Positives = 80/173 (46%), Gaps = 14/173 (8%)
Query: 56  TSEEQAVRMKVRECMEKEIAPIMAEYWEKAEFPFHVIPKLGALRVAGGTIKGYGCP---- 111
           T E +A+    R  +E+EIAP +AE+    E P  +   L A  V    + G G P    
Sbjct: 30  TPERRALSQMARSFVEREIAPKLAEWEHVGEIPRDL--HLNAAEVG---LLGIGFPEEVG 84
Query: 112 ---GHSVTGAAIAIAEIARVDASCSTFILVHSSLAMLTIALCGSEEQKQKYL-PSLAQLN 167
              G+++  A +  A +A   ++     L    +A+  IA  GS+   ++Y+ P+LA   
Sbjct: 85  GSGGNAIDSALVTEAILAAGGSTGVCAALFTHGIALPHIAANGSDALIERYVRPTLAG-K 143
Query: 168 TIACWALTEPAYGSDASALNTTATKVEGGWILEGQKRWIGNSTFADVLVIFAR 220
            I    +TEP  GSD + L T A +    +++ G K +I +   AD +    R
Sbjct: 144 MIGSLGVTEPGAGSDVANLRTRAVREGDTYVVNGAKTFITSGVRADFVTTAVR 196

>pdb|2WBI|A Chain A, Crystal Structure Of Human Acyl-Coa Dehydrogenase 11 Length = 428

Iteration: 1
 Score = 47.0 bits (110), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 27/86 (31%), Positives = 46/86 (53%), Gaps = 5/86 (5%)
Query: 144 MLTIALCGSEEQKQKYLPSLAQLNTIACWALTEP-AYGSDASALNTTATKVEGGWILEGQ 202
           M  + L GSEEQK+++L  L Q N  +C+ +TEP    SDA+ +  +  + E  +++ G+
Sbjct: 124 MEVLHLYGSEEQKKQWLEPLLQGNITSCFCMTEPDVASSDATNIECSIQRDEDSYVINGK 183
Query: 203 KRW---IGNSTFADVLVIFARNTTTN 225
           K W    GN     + ++  R   T+
Sbjct: 184 KWWSSGAGNPK-CKIAIVLGRTQNTS 208

>pdb|3OIB|A Chain A, Crystal Structure Of A Putative Acyl-Coa Dehydrogenase From Mycobacterium Smegmatis, Iodide Soak Length = 403

Iteration: 1
 Score = 44.7 bits (104), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 47/172 (27%), Positives = 69/172 (40%), Gaps = 10/172 (5%)
Query: 56  TSEEQAVRMKVRECMEKEIAPIMAEYWEKA-EFPFHVIPKLGALRVAGGTIKGYGCPGHS 114
           T+E +A+R  VR   E+E+ P  A  WE+A E P  +  K   L + G            
Sbjct: 27  TAEREALRKTVRAFAEREVLP-HAHEWERAGEIPRELHRKAAELGLLGAGFPEDAGGSGG 85
Query: 115 VTGAAIAIAEIARVDASCSTFILVHSSLAMLTIAL-----CGSEEQKQKYLPSLAQLNTI 169
                + I E      S      V++SL    IA+      G +     Y+    +   I
Sbjct: 86  DGADPVVICEEMHYAGSPGG---VYASLFTCGIAVPHMIASGDQRLIDTYVRPTLRGEKI 142
Query: 170 ACWALTEPAYGSDASALNTTATKVEGGWILEGQKRWIGNSTFADVLVIFARN 221
              A+TEP  GSD   L T A      +++ G K +I +   AD +V  AR 
Sbjct: 143 GALAITEPGGGSDVGHLRTRADLDGDHYVINGAKTYITSGVRADYVVTAART 194

>pdb|2FON|A Chain A, X-Ray Crystal Structure Of Leacx1, An Acyl-Coa Oxidase From Lycopersicon Esculentum (Tomato) Length = 683

Iteration: 1
 Score = 42.7 bits (99), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 20/57 (35%), Positives = 34/57 (59%)
Query: 135 FILVHSSLAMLTIALCGSEEQKQKYLPSLAQLNTIACWALTEPAYGSDASALNTTAT 191
           F  +H  + +  I   G+++Q++K+LP   ++  I C+A TE  +GS+   L TTAT
Sbjct: 117 FTDLHWGMFIPAIKGQGTDKQQEKWLPLAYKMQIIGCYAQTELGHGSNVQGLETTAT 173

>pdb|1W07|A Chain A, Arabidopsis Thaliana Acyl-Coa Oxidase 1 Length = 659

Iteration: 1
 Score = 41.6 bits (96), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 20/57 (35%), Positives = 34/57 (59%)
Query: 135 FILVHSSLAMLTIALCGSEEQKQKYLPSLAQLNTIACWALTEPAYGSDASALNTTAT 191
           ++ +H  + +  I   G+EEQ++K+L    ++  I C+A TE  +GS+   L TTAT
Sbjct: 98  YVDLHWGMFVPAIKGQGTEEQQKKWLSLANKMQIIGCYAQTELGHGSNVQGLETTAT 154

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	240
2ix5_A	436	Acyl-coenzyme A oxidase 4, peroxisomal; FAD, ACX4,	1e-115
3sf6_A	403	Glutaryl-COA dehydrogenase; ssgcid, NIH, niaid, SB	7e-94
3swo_A	399	Glutaryl-COA dehydrogenase; ssgcid, glutaryl-COA d	5e-93
1siq_A	392	GCD, glutaryl-COA dehydrogenase; acyl-COA dehydrog	1e-92
2eba_A	385	Putative glutaryl-COA dehydrogenase; thermus therm	4e-91
3ii9_A	396	Glutaryl-COA dehydrogenase; slipchip, microfluidic	1e-90
2d29_A	387	Acyl-COA dehydrogenase; structural genomics, NPPSF	3e-55
2vig_A	391	Short-chain specific acyl-COA dehydrogenase,; fatt	6e-55
2dvl_A	372	Acyl-COA dehydrogenase; structural genomics, NPPSF	2e-54
2jif_A	404	Short/branched chain specific acyl-COA dehydrogen;	7e-54
1ukw_A	379	Acyl-COA dehydrogenase; oxidoreductase, riken stru	7e-54
3pfd_A	393	Acyl-COA dehydrogenase; structural genomics, seatt	4e-53
1egd_A	396	Medium chain acyl-COA dehydrogenase; flavoprotein,	2e-52
3nf4_A	387	Acyl-COA dehydrogenase; seattle structural genomic	2e-52
1buc_A	383	Butyryl-COA dehydrogenase; acyl-COA dehydrogenase	2e-52
1rx0_A	393	Acyl-COA dehydrogenase family member 8, mitochondr	4e-51
1ivh_A	394	Isovaleryl-COA dehydrogenase; oxidoreductase, acyl	1e-50
3mpi_A	397	Glutaryl-COA dehydrogenase; alpha-beta fold, oxido	3e-50
2uxw_A	607	VERY-long-chain specific acyl-COA dehydrogenase; f	2e-48
1r2j_A	366	Protein FKBI; polyketide synthase, polyketide, acy	3e-46
2z1q_A	577	Acyl-COA dehydrogenase; FAD, structural genomics,	7e-46
3owa_A	597	Acyl-COA dehydrogenase; structural genomics, cente	1e-45
2c12_A	439	Nitroalkane oxidase; oxidoreductase, flavoenzyme,	4e-44
3m9v_A	439	FAD-dependent oxidoreductase; KIJD3, fatty acyl-CO	2e-43
3p4t_A	403	Putative acyl-COA dehydrogenase; ssgcid, structura	9e-43
2pg0_A	385	Acyl-COA dehydrogenase; GK1316, geobacillus kausto	2e-42
3r7k_A	403	Probable acyl COA dehydrogenase; ssgcid, structura	7e-42
3mkh_A	438	Nitroalkane oxidase; oxidoreductase flavoenzyme, a	6e-41
3mxl_A	395	Nitrososynthase; flavin monooxygenase, acyl-COA de	5e-38
2ddh_A	661	Acyl-COA oxidase; beta barrel, alpha UP-DOWN bundl	2e-21
1w07_A	659	Acyl-COA oxidase; oxidoreductase, peroxisomal beta	1e-20
2jbr_A	422	P-hydroxyphenylacetate hydroxylase C2 oxygenase C;	2e-17
2wbi_A	428	Acyl-COA dehydrogenase family member 11; human, ph	2e-13
2rfq_A	394	3-HSA hydroxylase, oxygenase; rhodococcus SP. RHA1	8e-11
3djl_A	541	Protein AIDB; alpha helix, beta-barrel, FAD, flavo	4e-08
2or0_A	414	Hydroxylase; APC7385, rhodococcus SP. RHA1, struct	4e-08
1u8v_A	490	Gamma-aminobutyrate metabolism dehydratase/isomera	7e-05
3hwc_A	515	Chlorophenol-4-monooxygenase component 2; beta bar	3e-04
2yyk_A	481	4-hydroxyphenylacetate-3-hydroxylase; structurome,	4e-04

>2ix5_A Acyl-coenzyme A oxidase 4, peroxisomal; FAD, ACX4, flavin, peroxisome, glyoxysome, fatty acid metabo lipid metabolism, acyl-COA oxidase; HET: CAA FAD; 2.7A {Arabidopsis thaliana} PDB: 2ix6_A* Length = 436

 Score =  335 bits (860), Expect = e-115
 Identities = 179/230 (77%), Positives = 200/230 (86%)

Query: 1   MTIHSSKHQDDVDKNARSSYFNLPALDISVAFPQATPASKFPPCASDYYQFDDLLTSEEQ 60
           M + SS  +   +K  +SSYF+LP +++SVAFPQATPAS FPPC SDYY F+DLLT EEQ
Sbjct: 1   MAVLSSADRASNEKKVKSSYFDLPPMEMSVAFPQATPASTFPPCTSDYYHFNDLLTPEEQ 60

Query: 61  AVRMKVRECMEKEIAPIMAEYWEKAEFPFHVIPKLGALRVAGGTIKGYGCPGHSVTGAAI 120
           A+R KVRECMEKE+APIM EYWEKAEFPFH+ PKLGA+ VAGG+IKGYGCPG S+T  AI
Sbjct: 61  AIRKKVRECMEKEVAPIMTEYWEKAEFPFHITPKLGAMGVAGGSIKGYGCPGLSITANAI 120

Query: 121 AIAEIARVDASCSTFILVHSSLAMLTIALCGSEEQKQKYLPSLAQLNTIACWALTEPAYG 180
           A AEIARVDASCSTFILVHSSL MLTIALCGSE QK+KYLPSLAQLNT+ACWALTEP  G
Sbjct: 121 ATAEIARVDASCSTFILVHSSLGMLTIALCGSEAQKEKYLPSLAQLNTVACWALTEPDNG 180

Query: 181 SDASALNTTATKVEGGWILEGQKRWIGNSTFADVLVIFARNTTTNQINGY 230
           SDAS L TTATKVEGGW + GQKRWIGNSTFAD+L+IFARNTTTNQING+
Sbjct: 181 SDASGLGTTATKVEGGWKINGQKRWIGNSTFADLLIIFARNTTTNQINGF 230

>3sf6_A Glutaryl-COA dehydrogenase; ssgcid, NIH, niaid, SBRI, UW, emerald biostructures, structu genomics; HET: FDA; 1.70A {Mycobacterium smegmatis} Length = 403

 Score =  280 bits (718), Expect = 7e-94
 Identities = 72/203 (35%), Positives = 108/203 (53%), Gaps = 3/203 (1%)

Query: 29  SVAFPQATPASKFPPCASDYYQFDDLLTSEEQAVRMKVRECMEKEIAPIMAEYWEKAEFP 88
           S+              A D    + +L++EE+ +R  VR  +++ I P +A ++E  E P
Sbjct: 4   SMTNSAVAQPRSQRRGADDLIGINAVLSAEEREIRDTVRSVVQRRIKPHIASWYEDGELP 63

Query: 89  FH-VIPKLGALRVAGGTIKGYGCPGHSVTGAAIAIAEIARVDASCSTFILVHSSLAMLTI 147
              +  +LG L + G  +KGYGC G S     +A  E+   D+   + + V  SLAM  I
Sbjct: 64  ARELAVELGELGLLGMHLKGYGCAGMSAVAYGLACLELEAGDSGIRSLVSVQGSLAMYAI 123

Query: 148 ALCGSEEQKQKYLPSLAQLNTIACWALTEPAYGSDASALNTTATKVEGGWILEGQKRWIG 207
              GS+EQK ++LP +A  + I C+ LTEP +GSD + + T AT+    WIL G K WI 
Sbjct: 124 HAFGSDEQKDQWLPDMASGHRIGCFGLTEPDHGSDPAGMRTRATRSGDDWILTGTKMWIT 183

Query: 208 NSTFADVLVIFARNTTTNQINGY 230
           N + ADV V++AR  T   I G+
Sbjct: 184 NGSVADVAVVWAR--TDEGIRGF 204

>3swo_A Glutaryl-COA dehydrogenase; ssgcid, glutaryl-COA dehdrogenase, mycobacerium smegmatis, S genomics; HET: FDA; 1.45A {Mycobacterium smegmatis} Length = 399

 Score =  277 bits (712), Expect = 5e-93
 Identities = 66/202 (32%), Positives = 107/202 (52%), Gaps = 4/202 (1%)

Query: 29  SVAFPQATPASKFPPCASDYYQFDDLLTSEEQAVRMKVRECMEKEIAPIMAEYWEKAEFP 88
           S+     +  S + P   + +  D LL  +E+ +   VR+ ++  + P +  ++E A  P
Sbjct: 2   SMTLTAPSKKSTYAP--LELFDTDRLLDQDERDIAATVRQFVDTRLKPNVEGWFESATLP 59

Query: 89  FHVIPKLGALRVAGGTIKGYGCPGHSVTGAAIAIAEIARVDASCSTFILVHSSLAMLTIA 148
             +  + G L V G  ++GYGC G +     +A  E+   D+   +F+ V  SL+M +I 
Sbjct: 60  SELAKEFGNLGVLGMHLQGYGCAGTNAVSYGLACMELEAGDSGFRSFVSVQGSLSMFSIY 119

Query: 149 LCGSEEQKQKYLPSLAQLNTIACWALTEPAYGSDASALNTTATKVEGGWILEGQKRWIGN 208
             GSEEQK ++LP LA  + I C+ LTEP +GS+ + + T A +    WIL G K WI N
Sbjct: 120 RYGSEEQKNEWLPRLAAGDAIGCFGLTEPDFGSNPAGMRTRARRDGSDWILNGTKMWITN 179

Query: 209 STFADVLVIFARNTTTNQINGY 230
              ADV  ++A+  T + I G+
Sbjct: 180 GNLADVATVWAQ--TDDGIRGF 199

>1siq_A GCD, glutaryl-COA dehydrogenase; acyl-COA dehydrogenase, decarboxylation, flavin protein, oxidoreductase; HET: FAD; 2.10A {Homo sapiens} SCOP: a.29.3.1 e.6.1.1 PDB: 2r0n_A* 1sir_A* 2r0m_A* Length = 392

 Score =  276 bits (708), Expect = 1e-92
 Identities = 69/187 (36%), Positives = 97/187 (51%), Gaps = 3/187 (1%)

Query: 46  SDYYQFDDLLTSEEQAVRMKVRECMEKEIAPIMAEYWEKAEFPFHVIPKLGALRVAGGTI 105
            D    ++ LT++E  +R   R   ++ + P +        F   +I ++G L V G TI
Sbjct: 5   QDPLVLEEQLTTDEILIRDTFRTYCQERLMPRILLANRNEVFHREIISEMGELGVLGPTI 64

Query: 106 KGYGCPGHSVTGAAIAIAEIARVDASCSTFILVHSSLAMLTIALCGSEEQKQKYLPSLAQ 165
           KGYGC G S     +   E+ RVD+   + + V SSL M  I   GSEEQ+QKYLP LA+
Sbjct: 65  KGYGCAGVSSVAYGLLARELERVDSGYRSAMSVQSSLVMHPIYAYGSEEQRQKYLPQLAK 124

Query: 166 LNTIACWALTEPAYGSDASALNTTA--TKVEGGWILEGQKRWIGNSTFADVLVIFARNTT 223
              + C+ LTEP  GSD S++ T A        + L G K WI NS  AD+ V++AR   
Sbjct: 125 GELLGCFGLTEPNSGSDPSSMETRAHYNSSNKSYTLNGTKTWITNSPMADLFVVWAR-CE 183

Query: 224 TNQINGY 230
              I G+
Sbjct: 184 DGCIRGF 190

>2eba_A Putative glutaryl-COA dehydrogenase; thermus thermophilius, FAD, STRU genomics, NPPSFA; HET: FAD; 2.21A {Thermus thermophilus} Length = 385

 Score =  272 bits (698), Expect = 4e-91
 Identities = 71/186 (38%), Positives = 103/186 (55%), Gaps = 3/186 (1%)

Query: 47  DYYQFDDLLTSEEQAVRMKVRECMEKEIAPIMAEYWEKAEFPFHVIPKLGALRVAGGTIK 106
           D+Y  +DLLT EE+ V+   R  +EKE  P + ++WE+  FP H+IP+   L   G T+ 
Sbjct: 3   DFYALEDLLTPEEKEVQKAARRFLEKEALPHIRDWWEEGVFPTHLIPRFAELGFLGPTLP 62

Query: 107 -GYGCPGHSVTGAAIAIAEIARVDASCSTFILVHSSLAMLTIALCGSEEQKQKYLPSLAQ 165
             YG  G S     +   E+ RVD+   +F+ V SSL M  I   GSEEQK+++LP LA+
Sbjct: 63  PEYGGAGVSSAAYGLICYELERVDSGLRSFVSVQSSLVMYPIYAYGSEEQKREFLPKLAR 122

Query: 166 LNTIACWALTEPAYGSDASA-LNTTATKVEGGWILEGQKRWIGNSTFADVLVIFARNTTT 224
              + C+ LTEP  GSD    + T A +    W+L G K WI N   A + VI+A+    
Sbjct: 123 GEMVGCFGLTEPDGGSDPYGNMKTRARREGDTWVLNGTKMWITNGNLAHLAVIWAK-DEG 181

Query: 225 NQINGY 230
            ++ G+
Sbjct: 182 GEVLGF 187

>3ii9_A Glutaryl-COA dehydrogenase; slipchip, microfluidics, screening, optimization, protein crystallization, structural genomics; HET: PGE PG4; 1.74A {Burkholderia pseudomallei 1710B} PDB: 3eon_A* 3eom_A* 3gqt_A* 3gnc_A* 3d6b_A Length = 396

 Score =  271 bits (696), Expect = 1e-90
 Identities = 66/196 (33%), Positives = 99/196 (50%), Gaps = 3/196 (1%)

Query: 38  ASKFPPCASDYYQFDDLLTSEEQAVRMKVRECMEKEIAPIMAEYWEKAEFPFHVIPKLGA 97
            +       D    D  L  +E+ VR       + ++AP + E +        +  ++G 
Sbjct: 2   MAAATFHWDDPLLLDQQLADDERMVRDAAHAYAQGKLAPRVTEAFRHETTDAAIFREMGE 61

Query: 98  LRVAGGTI-KGYGCPGHSVTGAAIAIAEIARVDASCSTFILVHSSLAMLTIALCGSEEQK 156
           + + G TI + YG PG       +   E+ RVD+   + + V SSL M+ I   GS+ QK
Sbjct: 62  IGLLGPTIPEQYGGPGLDYVSYGLIAREVERVDSGYRSMMSVQSSLVMVPIFEFGSDAQK 121

Query: 157 QKYLPSLAQLNTIACWALTEPAYGSDASALNTTATKVEGGWILEGQKRWIGNSTFADVLV 216
           +KYLP LA    I C+ LTEP +GSD  ++ T A KV GG+ L G K WI NS  ADV V
Sbjct: 122 EKYLPKLATGEWIGCFGLTEPNHGSDPGSMVTRARKVPGGYSLSGSKMWITNSPIADVFV 181

Query: 217 IFAR--NTTTNQINGY 230
           ++A+      ++I G+
Sbjct: 182 VWAKLDEDGRDEIRGF 197

>2d29_A Acyl-COA dehydrogenase; structural genomics, NPPSFA, national project protein structural and functional analyses; HET: FAD; 1.65A {Thermus thermophilus} SCOP: a.29.3.1 e.6.1.1 PDB: 1ws9_A 2cx9_A* Length = 387

 Score =  180 bits (459), Expect = 3e-55
 Identities = 67/167 (40%), Positives = 90/167 (53%), Gaps = 1/167 (0%)

Query: 55  LTSEEQAVRMKVRECMEKEIAPIMAEYWEKAEFPFHVIPKLGALRVAGGTI-KGYGCPGH 113
             +EE+ V    RE ++ E+AP  AE      FP+ ++ KL    V G  + + YG  G 
Sbjct: 7   EGAEERQVLGPFREFLKAEVAPGAAERDRTGAFPWDLVRKLAEFGVFGALVPEAYGGAGL 66

Query: 114 SVTGAAIAIAEIARVDASCSTFILVHSSLAMLTIALCGSEEQKQKYLPSLAQLNTIACWA 173
           S    A  +  IA  D + +  +  H+SLA   I L GSE QK+ +LP LA    +  W 
Sbjct: 67  STRLFARMVEAIAYYDGALALTVASHNSLATGHILLAGSEAQKEAFLPKLASGEALGAWG 126

Query: 174 LTEPAYGSDASALNTTATKVEGGWILEGQKRWIGNSTFADVLVIFAR 220
           LTEP  GSDA+AL T A KVEGGW L G K++I   + A V V+ AR
Sbjct: 127 LTEPGSGSDAAALKTKAEKVEGGWRLNGTKQFITQGSVAGVYVVMAR 173

>2vig_A Short-chain specific acyl-COA dehydrogenase,; fatty acid metabolism, FAD, polymorphism, flavoprotein, mitochondrion, disease mutation; HET: FAD COS; 1.9A {Homo sapiens} PDB: 1jqi_A* Length = 391

 Score =  179 bits (457), Expect = 6e-55
 Identities = 59/167 (35%), Positives = 86/167 (51%), Gaps = 1/167 (0%)

Query: 55  LTSEEQAVRMKVRECMEKEIAPIMAEYWEKAEFPFHVIPKLGALRVAGGTI-KGYGCPGH 113
           L    Q +    R+  EKE+ PI A+  ++  FP   + K+G L +    + +  G  G 
Sbjct: 6   LPETHQMLLQTCRDFAEKELFPIAAQVDKEHLFPAAQVKKMGGLGLLAMDVPEELGGAGL 65

Query: 114 SVTGAAIAIAEIARVDASCSTFILVHSSLAMLTIALCGSEEQKQKYLPSLAQLNTIACWA 173
                AIA+ EI+R  AS    + V++SL +  I   GS+EQKQ ++      + I C+A
Sbjct: 66  DYLAYAIAMEEISRGCASTGVIMSVNNSLYLGPILKFGSKEQKQAWVTPFTSGDKIGCFA 125

Query: 174 LTEPAYGSDASALNTTATKVEGGWILEGQKRWIGNSTFADVLVIFAR 220
           L+EP  GSDA A +TTA      W+L G K WI N+  A   V+FA 
Sbjct: 126 LSEPGNGSDAGAASTTARAEGDSWVLNGTKAWITNAWEASAAVVFAS 172

>2dvl_A Acyl-COA dehydrogenase; structural genomics, NPPSFA, national project on protein STR and functional analyses; HET: FAD; 2.50A {Thermus thermophilus} Length = 372

 Score =  178 bits (453), Expect = 2e-54
 Identities = 60/168 (35%), Positives = 90/168 (53%), Gaps = 1/168 (0%)

Query: 54  LLTSEEQAVRMKVRECMEKEIAPIMAEYWEKAEFPFHVIPKLGALRVAGGTI-KGYGCPG 112
            LT E++ V   VR    + + P+  EY  KAE+P+  +  L  L + G T  + +G  G
Sbjct: 2   TLTQEQRLVLDAVRRVAREVLYPLAPEYDRKAEYPWPQLKALAELGLLGMTTPEEWGGVG 61

Query: 113 HSVTGAAIAIAEIARVDASCSTFILVHSSLAMLTIALCGSEEQKQKYLPSLAQLNTIACW 172
                 A+A+ E+A  D S +  + V S L    +   GSE QK++YL  LA+   I  +
Sbjct: 62  LDSVTWALALEELAAADPSVAVIVSVTSGLPQYMLLRFGSEAQKRRYLVPLARGEWIGAF 121

Query: 173 ALTEPAYGSDASALNTTATKVEGGWILEGQKRWIGNSTFADVLVIFAR 220
            LTEP  GSDA +L   A +V+GG++L G K WI ++  A + V+ AR
Sbjct: 122 CLTEPQAGSDAKSLRAEARRVKGGFVLNGVKSWITSAGHAHLYVVMAR 169

>2jif_A Short/branched chain specific acyl-COA dehydrogen; mitochondrion, oxidoreductase, transit peptide, fatty acid metabolism, FAD, flavoprotein; HET: FAD COS; 2.0A {Homo sapiens} Length = 404

 Score =  177 bits (451), Expect = 7e-54
 Identities = 52/167 (31%), Positives = 85/167 (50%), Gaps = 2/167 (1%)

Query: 55  LTSEEQAVRMKVRECMEKEIAPIMAEYWEKAEFPFHVIPKLGALRVAGGTI-KGYGCPGH 113
            T EE  ++  V++  +++IAP+++   E ++    VI  L    + G  +   YG  G 
Sbjct: 29  FTDEEMMIKSSVKKFAQEQIAPLVSTMDENSKMEKSVIQGLFQQGLMGIEVDPEYGGTGA 88

Query: 114 SVTGAAIAIAEIARVDASCSTFILVHSSLAMLTIALCGSEEQKQKYLPSLAQLNTIACWA 173
           S     + I E+A+VDAS + F  + ++L    I   G+EEQK  YLP L     +  + 
Sbjct: 89  SFLSTVLVIEELAKVDASVAVFCEIQNTLINTLIRKHGTEEQKATYLPQLTT-EKVGSFC 147

Query: 174 LTEPAYGSDASALNTTATKVEGGWILEGQKRWIGNSTFADVLVIFAR 220
           L+E   GSD+ AL T A K    ++L G K WI ++  A + ++ A 
Sbjct: 148 LSEAGAGSDSFALKTRADKEGDYYVLNGSKMWISSAEHAGLFLVMAN 194

>1ukw_A Acyl-COA dehydrogenase; oxidoreductase, riken structural genomics/proteomics initiative, RSGI, structural genomics; HET: FAD; 2.40A {Thermus thermophilus} SCOP: a.29.3.1 e.6.1.1 Length = 379

 Score =  176 bits (449), Expect = 7e-54
 Identities = 58/167 (34%), Positives = 89/167 (53%), Gaps = 2/167 (1%)

Query: 55  LTSEEQAVRMKVRECMEKEIAPIMAEYWEKAEFPFHVIPKLGALRVAGGTI-KGYGCPGH 113
           LT E++ ++   R   ++ I P+  EY EK E P+ VI KL  + +    I + YG  G 
Sbjct: 5   LTEEQRQLQALARRFAKEVILPVAQEYDEKEEVPWPVIEKLHEVGLLNAIIPEEYGGMGL 64

Query: 114 SVTGAAIAIAEIARVDASCSTFILVHSSLAMLTIALCGSEEQKQKYLPSLAQLNTIACWA 173
            +    I   E+A       T I + S L +  + L G+EEQK+++L  L +   +A +A
Sbjct: 65  KMLDEVIVGEELAYACMGIYT-IPMASDLGITPVLLAGTEEQKERFLRPLTEKPALAAFA 123

Query: 174 LTEPAYGSDASALNTTATKVEGGWILEGQKRWIGNSTFADVLVIFAR 220
           L+EP  GSDA+AL T A +    ++L G K WI N   A+ +V+FA 
Sbjct: 124 LSEPGNGSDAAALKTRAIRQGDHYVLNGTKMWISNGGEAEWVVVFAT 170

>3pfd_A Acyl-COA dehydrogenase; structural genomics, seattle structural genomics center for infectious disease, ssgcid; HET: FDA; 2.10A {Mycobacterium thermoresistibile} Length = 393

 Score =  175 bits (445), Expect = 4e-53
 Identities = 62/176 (35%), Positives = 86/176 (48%), Gaps = 4/176 (2%)

Query: 46  SDYYQFDDLLTSEEQAVRMKVRECMEKEIAPIMAEYWEKAEFPFHVIPKLGALRVAGGTI 105
             +  F   L  E  A+R  +R   EKEIAP  AE  EKA FP   +  L +   +   +
Sbjct: 12  PSFELFQ--LPEEHIALREAIRALAEKEIAPYAAEVDEKARFPEEALAALNSSGFSAIHV 69

Query: 106 -KGYGCPGHSVTGAAIAIAEIARVDASCSTFILVHSSLAMLTIALCGSEEQKQKYLPSLA 164
            + YG  G       I I E+ARVD S S    V+  L  + + L GSEE K++ LP++A
Sbjct: 70  PEEYGGQGADSVATCIVIEEVARVDCSASLIPAVNK-LGTMGLILRGSEELKKQVLPAVA 128

Query: 165 QLNTIACWALTEPAYGSDASALNTTATKVEGGWILEGQKRWIGNSTFADVLVIFAR 220
               +A +AL+E   GSDA+++ T A      WIL G K WI N   +    + A 
Sbjct: 129 SGEAMASYALSEREAGSDAASMRTRAVADGDDWILNGSKCWITNGGKSTWYTVMAV 184

>1egd_A Medium chain acyl-COA dehydrogenase; flavoprotein, electron transfer; HET: FAD; 2.40A {Homo sapiens} SCOP: a.29.3.1 e.6.1.1 PDB: 1egc_A* 1ege_A* 1t9g_A* 2a1t_A* 1udy_A* 3mdd_A* 3mde_A* Length = 396

 Score =  173 bits (441), Expect = 2e-52
 Identities = 48/167 (28%), Positives = 81/167 (48%), Gaps = 2/167 (1%)

Query: 55  LTSEEQAVRMKVRECMEKEIAPIMAEYWEKAEFPFHVIPKLGALRVAGGTI-KGYGCPGH 113
            T +++  +   R+   +EI P+ AEY +  E+P  +I +   L +    I +  G  G 
Sbjct: 16  FTEQQKEFQATARKFAREEIIPVAAEYDKTGEYPVPLIRRAWELGLMNTHIPENCGGLGL 75

Query: 114 SVTGAAIAIAEIARVDASCSTFILVHSSLAMLTIALCGSEEQKQKYLPSLAQLNTIACWA 173
               A +   E+A       T I  +S L  + I + G+++QK+KYL  + +   +  + 
Sbjct: 76  GTFDACLISEELAYGCTGVQTAIEGNS-LGQMPIIIAGNDQQKKKYLGRMTEEPLMCAYC 134

Query: 174 LTEPAYGSDASALNTTATKVEGGWILEGQKRWIGNSTFADVLVIFAR 220
           +TEP  GSD + + T A K    +I+ GQK WI N   A+   + AR
Sbjct: 135 VTEPGAGSDVAGIKTKAEKKGDEYIINGQKMWITNGGKANWYFLLAR 181

>3nf4_A Acyl-COA dehydrogenase; seattle structural genomics center for infectious disease, S FAD, FADH, tuberculosis, oxidoredu; HET: FAD; 2.35A {Mycobacterium thermoresistibile} Length = 387

 Score =  173 bits (441), Expect = 2e-52
 Identities = 57/185 (30%), Positives = 90/185 (48%), Gaps = 6/185 (3%)

Query: 37  PASKFPPCASDYYQFDDLLTSEEQAVRMKVRECMEKEIAPIMAEYWEKAEFPFHVIPKLG 96
           P S   P A D        + E   +    RE  +K + PI+  + +   +P  V  +LG
Sbjct: 2   PGSMIHPMAVDRLL----PSQEAAELIELTREIADKVLDPIVDRHEKDETYPEGVFEQLG 57

Query: 97  ALRVAGGTI-KGYGCPGHSVTGAAIAIAEIARVDASCSTFILVHSSLAMLTIALCGSEEQ 155
           A  +      + +G  G         + EIA   AS +  + VHS L+   + + G+EEQ
Sbjct: 58  AAGLLSLPQPEEWGGGGQPYEVYLQVLEEIAARWASVAVAVSVHS-LSSHPLLVFGTEEQ 116

Query: 156 KQKYLPSLAQLNTIACWALTEPAYGSDASALNTTATKVEGGWILEGQKRWIGNSTFADVL 215
           K+++LP +     I  ++L+EP  GSDA+AL   AT  +GG+++ G K WI +   AD  
Sbjct: 117 KKRWLPGMLSGEQIGAYSLSEPQAGSDAAALRCAATPTDGGYVINGSKSWITHGGKADFY 176

Query: 216 VIFAR 220
            +FAR
Sbjct: 177 TLFAR 181

>1buc_A Butyryl-COA dehydrogenase; acyl-COA dehydrogenase short-chain acyl-COA dehydrogenase, flavoprotein, oxidoreductase; HET: CAA FAD; 2.50A {Megasphaera elsdenii} SCOP: a.29.3.1 e.6.1.1 Length = 383

 Score =  172 bits (439), Expect = 2e-52
 Identities = 54/171 (31%), Positives = 84/171 (49%), Gaps = 5/171 (2%)

Query: 55  LTSEEQAVRMKVRECMEKEIAPIMAEYWEKAEFPFHVIPKLGALRVAGGTIK----GYGC 110
           LT  +Q       +  EK++AP + E   K  +   +I +L +L + G   +    G G 
Sbjct: 5   LTDIQQDFLKLAHDFGEKKLAPTVTERDHKGIYDKELIDELLSLGITGAYFEEKYGGSGD 64

Query: 111 PGHSVTGAAIAIAEIARVDASCSTFILVHSSLAMLTIALCGSEEQKQKYLPSLAQLNTIA 170
            G  V    +A+ E+A+ DA  +  +    SL    I   G+E QK+K+L  L +   + 
Sbjct: 65  DGGDVLSYILAVEELAKYDAGVAITLSATVSLCANPIWQFGTEAQKEKFLVPLVEGTKLG 124

Query: 171 CWALTEPAYGSDASALNTTATKVEGG-WILEGQKRWIGNSTFADVLVIFAR 220
            + LTEP  G+DAS   T ATK + G + L G K +I N   AD+ ++FA 
Sbjct: 125 AFGLTEPNAGTDASGQQTIATKNDDGTYTLNGSKIFITNGGAADIYIVFAM 175

>1rx0_A Acyl-COA dehydrogenase family member 8, mitochondrial; flavoprotein, coenzyme A, oxidoreductase; HET: FAD 2MC; 1.77A {Homo sapiens} SCOP: a.29.3.1 e.6.1.1 Length = 393

 Score =  170 bits (432), Expect = 4e-51
 Identities = 52/167 (31%), Positives = 83/167 (49%), Gaps = 2/167 (1%)

Query: 55  LTSEEQAVRMKVRECMEKEIAPIMAEYWEKAEFPFHVIPKLGALRVAGGTI-KGYGCPGH 113
           L  E++  +    +   +E+AP MAE+ +K  FP  V+ K   L   G  I    G  G 
Sbjct: 19  LNEEQKEFQKVAFDFAAREMAPNMAEWDQKELFPVDVMRKAAQLGFGGVYIQTDVGGSGL 78

Query: 114 SVTGAAIAIAEIARVDASCSTFILVHSSLAMLTIALCGSEEQKQKYLPSLAQLNTIACWA 173
           S    ++    +A    S + +I +H+ +    I   G+EEQ+ K+ P L  +   A + 
Sbjct: 79  SRLDTSVIFEALATGCTSTTAYISIHN-MCAWMIDSFGNEEQRHKFCPPLCTMEKFASYC 137

Query: 174 LTEPAYGSDASALNTTATKVEGGWILEGQKRWIGNSTFADVLVIFAR 220
           LTEP  GSDA++L T+A K    +IL G K +I  +  +D+ V+  R
Sbjct: 138 LTEPGSGSDAASLLTSAKKQGDHYILNGSKAFISGAGESDIYVVMCR 184

>1ivh_A Isovaleryl-COA dehydrogenase; oxidoreductase, acyl-COA dehydrogenase, flavoprotein, isovaleric acidemia; HET: FAD COS; 2.60A {Homo sapiens} SCOP: a.29.3.1 e.6.1.1 Length = 394

 Score =  168 bits (428), Expect = 1e-50
 Identities = 55/179 (30%), Positives = 84/179 (46%), Gaps = 6/179 (3%)

Query: 48  YYQFDDL---LTSEEQAVRMKVRECMEKEIAPIMAEYWEKAEFPF--HVIPKLGALRVAG 102
               DD    L+ E++ +R  + + +++ +AP   E     EF        +LG L V G
Sbjct: 3   LLPVDDAINGLSEEQRQLRQTMAKFLQEHLAPKAQEIDRSNEFKNLREFWKQLGNLGVLG 62

Query: 103 GTI-KGYGCPGHSVTGAAIAIAEIARVDASCSTFILVHSSLAMLTIALCGSEEQKQKYLP 161
            T    YG  G       + + EI+R   +       HS+L +  +   G+E QK+KYLP
Sbjct: 63  ITAPVQYGGSGLGYLEHVLVMEEISRASGAVGLSYGAHSNLCINQLVRNGNEAQKEKYLP 122

Query: 162 SLAQLNTIACWALTEPAYGSDASALNTTATKVEGGWILEGQKRWIGNSTFADVLVIFAR 220
            L     I   A++EP  GSD  ++   A K    +IL G K WI N   ADVL+++A+
Sbjct: 123 KLISGEYIGALAMSEPNAGSDVVSMKLKAEKKGNHYILNGNKFWITNGPDADVLIVYAK 181

>3mpi_A Glutaryl-COA dehydrogenase; alpha-beta fold, oxidoreductase; HET: FAD GRA; 2.05A {Desulfococcus multivorans} PDB: 3mpj_A* Length = 397

 Score =  168 bits (427), Expect = 3e-50
 Identities = 54/170 (31%), Positives = 84/170 (49%), Gaps = 4/170 (2%)

Query: 55  LTSEEQAVRMKVRECMEKEIAPIMAEYWEKAEFPF-HVIPKLGALRVAGGTI-KGYGCPG 112
           L+ E Q ++ +VR  + K+I P   ++  +  FP+   +  +G L   G  I + YG  G
Sbjct: 5   LSKELQMLQKEVRNFVNKKIVPFADQWDNENHFPYEEAVRPMGELGFFGTVIPEEYGGEG 64

Query: 113 --HSVTGAAIAIAEIARVDASCSTFILVHSSLAMLTIALCGSEEQKQKYLPSLAQLNTIA 170
                  A I   EIAR  ++    + +       TI   GSE  K+KY+P L+    + 
Sbjct: 65  MDQGWLAAMIVTEEIARGSSALRVQLNMEVLGCAYTILTYGSEALKKKYVPKLSSAEFLG 124

Query: 171 CWALTEPAYGSDASALNTTATKVEGGWILEGQKRWIGNSTFADVLVIFAR 220
            + +TEP  GSD  A+++TA      W+L G K WI N+  ADVL+ +A 
Sbjct: 125 GFGITEPDAGSDVMAMSSTAEDKGDHWLLNGSKTWISNAAQADVLIYYAY 174

>2uxw_A VERY-long-chain specific acyl-COA dehydrogenase; fatty acid metabolism, transit peptide, disease mutation, LI metabolism, coenzyme A dehydrogenase; HET: FAD TH3; 1.45A {Homo sapiens} PDB: 3b96_A* Length = 607

 Score =  166 bits (423), Expect = 2e-48
 Identities = 63/236 (26%), Positives = 94/236 (39%), Gaps = 11/236 (4%)

Query: 4   HSSKHQDDVDKNARSSYFNLPALDISVAFPQATPASKFP-PCASDYYQFDDLLTSEEQAV 62
           H   H   VD    + YF   +  + +   Q T    FP P        ++  T   + +
Sbjct: 3   HHHHHSSGVDLGTENLYFQSMSFAVGMFKGQLTTDQVFPYP-----SVLNEEQTQFLKEL 57

Query: 63  RMKVRECMEKEIAPIMAEYWEKAEFPFHVIPKLGALRVAGGTI-KGYGCPGHSVTGAAIA 121
              V    E+   P  A+              L  L   G  +    G  G   T  A  
Sbjct: 58  VEPVSRFFEEVNDP--AKNDALEMVEETTWQGLKELGAFGLQVPSELGGVGLCNTQYARL 115

Query: 122 IAEIARVDASCSTFILVHSSLAMLTIALCGSEEQKQKYLPSLAQLNTIACWALTEPAYGS 181
           +  +   D      +  H S+    I L G++ QK+KYLP LA   T+A + LTEP+ GS
Sbjct: 116 VEIVGMHDLGVGITLGAHQSIGFKGILLFGTKAQKEKYLPKLASGETVAAFCLTEPSSGS 175

Query: 182 DASALNTTATKVEGG--WILEGQKRWIGNSTFADVLVIFARNTTTNQINGYANQSI 235
           DA+++ T+A     G  + L G K WI N   AD+  +FA+   T+   G   + I
Sbjct: 176 DAASIRTSAVPSPCGKYYTLNGSKLWISNGGLADIFTVFAKTPVTDPATGAVKEKI 231

>1r2j_A Protein FKBI; polyketide synthase, polyketide, acyl-COA dehydrogenase, , aldehyde dehydrogenase, oxidoreductase; HET: FAD; 2.10A {Streptomyces hygroscopicus} SCOP: a.29.3.1 e.6.1.1 Length = 366

 Score =  156 bits (397), Expect = 3e-46
 Identities = 35/165 (21%), Positives = 63/165 (38%), Gaps = 10/165 (6%)

Query: 57  SEEQAVRMKVRECMEKEIAPIMAEYWEKAEFPFHVIPKLGALRVAGGTI-KGYGCPGHSV 115
            E  A+       +   +    AE+    E P  ++ +LGA  +    +   +G  G   
Sbjct: 2   PERDAL-------LTDLVGDRAAEWDTSGELPRDLLVRLGADGLLCAEVAAEHGGLGLGS 54

Query: 116 TGAAIAIAEIARVDASCSTFILVHSSLAMLTIALCGSEEQKQKYLPSLAQLNTIACWALT 175
                  A +  + +S  + +     +A  T+   G   Q+  +L  L     +A    +
Sbjct: 55  RENGEFTAHVGSLCSSLRSVMTSQG-MAAWTVQRLGDAGQRATFLKELTS-GKLAAVGFS 112

Query: 176 EPAYGSDASALNTTATKVEGGWILEGQKRWIGNSTFADVLVIFAR 220
           E   GSD SA+ T         +++G K W   + +AD LV+F  
Sbjct: 113 ERQAGSDLSAMRTRVRLDGDTAVVDGHKVWTTAAAYADHLVVFGL 157

>2z1q_A Acyl-COA dehydrogenase; FAD, structural genomics, NPPSFA, Na project on protein structural and functional analyses; HET: FAD; 2.30A {Thermus thermophilus} Length = 577

 Score =  159 bits (405), Expect = 7e-46
 Identities = 54/171 (31%), Positives = 82/171 (47%), Gaps = 7/171 (4%)

Query: 55  LTSEEQAVRMKVRECMEKEIAPIMAEYWEKAE--FPFHVIPKLGALRVAGGTI-KGYGCP 111
                + +    R  +E+E+ P++    E  E      ++ K G L +    + + YG  
Sbjct: 28  FDESVKEIARTTRTFVEREVLPLLER-MEHGELELNVPLMRKAGELGLLAIDVPEEYGGL 86

Query: 112 GHSVTGAAIAIAEIARVDASCSTFILVHSSLAMLTIALCGSEEQKQKYLPSLAQLNTIAC 171
                 + +   E++      S     H+S+  L +   G+EEQK+KYLP LA    IA 
Sbjct: 87  DLPKVISTVVAEELSG-SGGFSVTYGAHTSIGTLPLVYFGTEEQKRKYLPKLASGEWIAA 145

Query: 172 WALTEPAYGSDASALNTTATKVEGG--WILEGQKRWIGNSTFADVLVIFAR 220
           + LTEP  GSDA A  T AT  E G  +IL G K+WI N+ FA +  +FA+
Sbjct: 146 YCLTEPGSGSDALAAKTRATLSEDGKHYILNGVKQWISNAGFAHLFTVFAK 196

>3owa_A Acyl-COA dehydrogenase; structural genomics, center for structural genomics of infec diseases, csgid, alpha-structure, beta-barrel; HET: MSE FAD 1PE; 1.97A {Bacillus anthracis} Length = 597

 Score =  159 bits (404), Expect = 1e-45
 Identities = 59/194 (30%), Positives = 93/194 (47%), Gaps = 16/194 (8%)

Query: 32  FPQATPASKFPPCASDYYQFDDLLTSEEQAVRMKVRECMEKEIAPIMAEYWEKAEFPF-- 89
             + T    F P         +  +SE + +     + +  E+ P +    E+ EF    
Sbjct: 19  VDEITIDQVFTP---------EDFSSEHKMIAKTTEDFIVNEVLPELEY-LEQHEFDRSV 68

Query: 90  HVIPKLGALRVAGGTI-KGYGCPGHSVTGAAIAIAEIARVDASCSTFILVHSSLAMLTIA 148
            ++ + G L + G  + + YG  G     +A+   + +R     +     H  +  L I 
Sbjct: 69  RLLKEAGELGLLGADVPEEYGGIGLDKVSSALIAEKFSRAG-GFAITHGAHVGIGSLPIV 127

Query: 149 LCGSEEQKQKYLPSLAQLNTIACWALTEPAYGSDASALNTTATKVEGG--WILEGQKRWI 206
           L G+EEQK+KYLP LA    +A +ALTEP  GSDA    TTA     G  ++L G+K+WI
Sbjct: 128 LFGNEEQKKKYLPLLATGEKLAAYALTEPGSGSDALGAKTTARLNAEGTHYVLNGEKQWI 187

Query: 207 GNSTFADVLVIFAR 220
            NS FADV +++A+
Sbjct: 188 TNSAFADVFIVYAK 201

>2c12_A Nitroalkane oxidase; oxidoreductase, flavoenzyme, acyl-COA dehydrogenase, long cell EDGE, FAD, inhibitor, flavoprotein; HET: SPM FAD PE4; 2.07A {Fusarium oxysporum} SCOP: a.29.3.1 e.6.1.1 PDB: 2c0u_A* 2zaf_A* 2reh_A* 3d9g_A* 3d9f_A* 3d9d_A* 3d9e_A* 3fcj_A* Length = 439

 Score =  152 bits (386), Expect = 4e-44
 Identities = 36/185 (19%), Positives = 70/185 (37%), Gaps = 20/185 (10%)

Query: 55  LTSEEQAVRMKVRECMEKEIAPIMAEY------WEKAEFPFHVIPKLGALRVAGGTI-KG 107
           L+  +   R   +      +    AEY        + +       +     +    +   
Sbjct: 6   LSPSQLEARRHAQAFANTVLTKASAEYSTQKDQLSRFQATRPFYREAVRHGLIKAQVPIP 65

Query: 108 YGCPGHSVTGAAIAIAEIARVDASCSTFILVHSSLAMLTIALCGSEEQKQKYLPSLA--Q 165
            G    S+   +I + E+  V+ + S   +V ++L ++ + LC S   ++K+L      +
Sbjct: 66  LGGTMESLVHESIILEELFAVEPATSI-TIVATALGLMPVILCDSPSLQEKFLKPFISGE 124

Query: 166 LNTIACWALTEPAYGSD-----ASALNTTATKVEGGWILEGQKRWIGNS-----TFADVL 215
              +A    +EP   ++        L TTA KV   W++ G+K W  NS       AD+ 
Sbjct: 125 GEPLASLMHSEPNGTANWLQKGGPGLQTTARKVGNEWVISGEKLWPSNSGGWDYKGADLA 184

Query: 216 VIFAR 220
            +  R
Sbjct: 185 CVVCR 189

>3m9v_A FAD-dependent oxidoreductase; KIJD3, fatty acyl-COA dehydrogenase family, kijanose, kijani FAD, flavoprotein; HET: TYD; 2.05A {Actinomadura kijaniata} Length = 439

 Score =  150 bits (382), Expect = 2e-43
 Identities = 35/186 (18%), Positives = 66/186 (35%), Gaps = 5/186 (2%)

Query: 37  PASKFPPCASDYYQFDDLLTSEEQAVRMKVRECMEKEIAPIMAEYWEKAEFPFHVIPKLG 96
           P       ++        +T   + +  ++   +   I    AE+     FP      L 
Sbjct: 4   PPWTARQDSTTGLYAP--VTPAGRVLLDRLAAHLP-RIRSTAAEHDRDGTFPTDTFDALR 60

Query: 97  ALRVAGGTI-KGYGCPGH-SVTGAAIAIAEIARVDASCSTFILVHSSLAMLTIALCGSEE 154
              + G T+    G  G   +   A+A+  +AR DAS +  + +  S  +         +
Sbjct: 61  KDGLMGATVPAELGGLGVDRLYDVAVALLAVARADASTALALHMQLSRGLTLGYEWRHGD 120

Query: 155 QKQKYLPSLAQLNTIACWALTEPAYGSDASALNTTATKVEGGWILEGQKRWIGNSTFADV 214
           ++ + L        +A  A+         +A+ T      GGW+L G+K  +  +     
Sbjct: 121 ERARTLAERILRGMVAGDAVVCSGIKDHHTAVTTLRPDGAGGWLLSGRKTLVSMAPVGTH 180

Query: 215 LVIFAR 220
            VI AR
Sbjct: 181 FVINAR 186

>3p4t_A Putative acyl-COA dehydrogenase; ssgcid, structural genomics, seattle structural genomics CEN infectious disease, oxidoreductase; HET: FAO; 1.70A {Mycobacterium smegmatis} PDB: 3oib_A* Length = 403

 Score =  148 bits (376), Expect = 9e-43
 Identities = 41/168 (24%), Positives = 67/168 (39%), Gaps = 2/168 (1%)

Query: 55  LTSEEQAVRMKVRECMEKEIAPIMAEYWEKAEFPFHVIPKLGALRVAGGTI-KGYGCPGH 113
            T+E +A+R  VR   E+E+ P   E+    E P  +  K   L + G    +  G  G 
Sbjct: 26  TTAEREALRKTVRAFAEREVLPHAHEWERAGEIPRELHRKAAELGLLGAGFPEDAGGSGG 85

Query: 114 SVTGAAIAIAEIARVDASCSTF-ILVHSSLAMLTIALCGSEEQKQKYLPSLAQLNTIACW 172
                 +   E+    +    +  L    +A+  +   G +     Y+    +   I   
Sbjct: 86  DGADPVVICEEMHYAGSPGGVYASLFTCGIAVPHMIASGDQRLIDTYVRPTLRGEKIGAL 145

Query: 173 ALTEPAYGSDASALNTTATKVEGGWILEGQKRWIGNSTFADVLVIFAR 220
           A+TEP  GSD   L T A      +++ G K +I +   AD +V  AR
Sbjct: 146 AITEPGGGSDVGHLRTRADLDGDHYVINGAKTYITSGVRADYVVTAAR 193

>2pg0_A Acyl-COA dehydrogenase; GK1316, geobacillus kaustophilus HTA structural genomics, PSI, protein structure initiative; HET: FAD; 1.80A {Geobacillus kaustophilus} Length = 385

 Score =  146 bits (372), Expect = 2e-42
 Identities = 50/168 (29%), Positives = 80/168 (47%), Gaps = 2/168 (1%)

Query: 54  LLTSEEQAVRMKVRECMEKEIAPIMAEYWEKAEFPFHVIPKLGALRVAGGTI-KGYGCPG 112
            L  E    R   R+ +EKE  P   ++ ++   P     K+G        + + YG   
Sbjct: 9   YLREEHHMFRAAFRKFLEKEAYPHYNDWEKRGIIPRSFWAKMGENGFLCPWVDEKYGGLN 68

Query: 113 HSVTGAAIAIAEIARVDASCSTFILVHSSLAMLTIALCGSEEQKQKYLPSLAQLNTIACW 172
                + +   E+ +V +S    I +H+ +    IA  G+EEQKQK+LP       I   
Sbjct: 69  ADFAYSVVINEELEKVGSS-LVGIGLHNDIVTPYIASYGTEEQKQKWLPKCVTGELITAI 127

Query: 173 ALTEPAYGSDASALNTTATKVEGGWILEGQKRWIGNSTFADVLVIFAR 220
           A+TEP  GSD + ++TTA K    +I+ GQK +I N   AD++V+  +
Sbjct: 128 AMTEPGAGSDLANISTTAVKDGDYYIVNGQKTFITNGIHADLIVVACK 175

>3r7k_A Probable acyl COA dehydrogenase; ssgcid, structural genomics, seattle structural genomics CEN infectious disease, oxidoreductase; HET: FDA; 2.50A {Mycobacterium abscessus} Length = 403

 Score =  146 bits (370), Expect = 7e-42
 Identities = 42/171 (24%), Positives = 71/171 (41%), Gaps = 2/171 (1%)

Query: 52  DDLLTSEEQAVRMKVRECMEKEIAPIMAEYWEKAEFPFHVIPKLGALRVAGGTI-KGYGC 110
           +   T E +A+    R  +E+EIAP +AE+    E P  +      + + G    +  G 
Sbjct: 26  EAWTTPERRALSQMARSFVEREIAPKLAEWEHVGEIPRDLHLNAAEVGLLGIGFPEEVGG 85

Query: 111 PGHSVTGAAIAIAEIARVDASCS-TFILVHSSLAMLTIALCGSEEQKQKYLPSLAQLNTI 169
            G +   +A+    I     S      L    +A+  IA  GS+   ++Y+        I
Sbjct: 86  SGGNAIDSALVTEAILAAGGSTGVCAALFTHGIALPHIAANGSDALIERYVRPTLAGKMI 145

Query: 170 ACWALTEPAYGSDASALNTTATKVEGGWILEGQKRWIGNSTFADVLVIFAR 220
               +TEP  GSD + L T A +    +++ G K +I +   AD +    R
Sbjct: 146 GSLGVTEPGAGSDVANLRTRAVREGDTYVVNGAKTFITSGVRADFVTTAVR 196

>3mkh_A Nitroalkane oxidase; oxidoreductase flavoenzyme, acyl-COA dehydrogen flavoprotein, oxidoreductase; HET: FAD; 2.00A {Podospora anserina} Length = 438

 Score =  144 bits (365), Expect = 6e-41
 Identities = 36/207 (17%), Positives = 67/207 (32%), Gaps = 25/207 (12%)

Query: 55  LTSEEQAVRMKVRECMEKEIAPIMAEY-------WEKAEFPFHVIPKLGALRVAGGTI-K 106
           L++ ++      R      + P    Y         + +          +  +  G I  
Sbjct: 7   LSASQKGTYQAARSLARNLLMPARQTYLQHPPNSPLRFQSTQPTYAAAVSAGILKGQISP 66

Query: 107 GYGCPGHSVTGAAIAIAEIARVDASCSTFILVHSSLAMLTIALCGSEEQKQKYLPSLA-- 164
            +G  G ++  +AI + E   V+ S +  I     L +  I L  +  Q  ++L      
Sbjct: 67  AHGGTGGTLIESAILVEECYSVEPSAALTIFATG-LGLTPINL-AAGPQHAEFLAPFLSG 124

Query: 165 QLNTIACWALTEPAYGSDA-----SALNTTATKVEGGWILEGQKRWIGNSTFAD------ 213
           + + +A    +EP   ++A         TTA      W++ G+K W  N    D      
Sbjct: 125 EGSPLASLVFSEPGGVANALEKGAPGFQTTARLEGDEWVINGEKMWATNCAGWDFKGCDL 184

Query: 214 --VLVIFARNTTTNQINGYANQSIKFV 238
             V+   A        +      I  V
Sbjct: 185 ACVVCRDATTPLEEGQDPENKVMIILV 211

>3mxl_A Nitrososynthase; flavin monooxygenase, acyl-COA dehydrogenas oxidoreductase; 3.15A {Micromonospora carbonacea} Length = 395

 Score =  135 bits (342), Expect = 5e-38
 Identities = 35/174 (20%), Positives = 60/174 (34%), Gaps = 15/174 (8%)

Query: 55  LTSEEQAVRMKVRECMEKEIAPIMAEYWEKAEFPFHVIPKLGALRVAGGTI-KGYGCPGH 113
           LT   + V   +   +   I+   A+      FP     +   L + G T+    G  G 
Sbjct: 9   LTPAGRTVVDLLAGVIP-RISAEAADRDRTGTFPVEAFEQFAKLGLMGATVPAELGGLGL 67

Query: 114 -SVTGAAIAIAEIARVDASCSTFILVHSSLAMLTIALCG-----SEEQKQKYLPSLAQLN 167
             +   A A+  +A  DAS +    V  S  +                 ++ L ++A+  
Sbjct: 68  TRLYDVATALMRLAEADASTALAWHVQLSRGLTLTYEWQHGTPPVRAMAERLLRAMAEGE 127

Query: 168 TIACWALTEPAYGSDASALNTTATK-VEGGWILEGQKRWIGNSTFADVLVIFAR 220
              C A        DA  + T       GGW+L G+K  +  +  A    + A+
Sbjct: 128 AAVCGA------LKDAPGVVTELHSDGAGGWLLSGRKVLVSMAPIATHFFVHAQ 175

>2ddh_A Acyl-COA oxidase; beta barrel, alpha UP-DOWN bundle, oxidoreductase; HET: FAD HXD; 2.07A {Rattus norvegicus} SCOP: a.29.3.2 a.29.3.2 e.6.1.2 PDB: 1is2_A* Length = 661

 Score = 91.5 bits (227), Expect = 2e-21
 Identities = 21/116 (18%), Positives = 44/116 (37%), Gaps = 8/116 (6%)

Query: 113 HSVTGAAIAIAEIARVDASCSTFILVHSSLAMLTIALCGSEEQKQKYLPSLAQLNTIACW 172
           + ++     +     V       + +H  + + T+    + EQ++++      L     +
Sbjct: 77  YGISDPEEIMWFKNSVHRGHPEPLDLHLGMFLPTLLHQATAEQQERFFMPAWNLEITGTY 136

Query: 173 ALTEPAYGSDASALNTTATKVEGG--WILEG-----QKRWIGNS-TFADVLVIFAR 220
           A TE  +G+    L TTAT       +IL        K W G     ++  ++ A+
Sbjct: 137 AQTEMGHGTHLRGLETTATYDPKTQEFILNSPTVTSIKWWPGGLGKTSNHAIVLAQ 192

>1w07_A Acyl-COA oxidase; oxidoreductase, peroxisomal beta-oxidation, FAD cofactor; HET: FAD; 2.0A {Arabidopsis thaliana} SCOP: a.29.3.2 a.29.3.2 e.6.1.2 PDB: 2fon_A* Length = 659

 Score = 89.2 bits (221), Expect = 1e-20
 Identities = 28/106 (26%), Positives = 48/106 (45%), Gaps = 8/106 (7%)

Query: 123 AEIARVDASCSTFILVHSSLAMLTIALCGSEEQKQKYLPSLAQLNTIACWALTEPAYGSD 182
           A   R       ++ +H  + +  I   G+EEQ++K+L    ++  I C+A TE  +GS+
Sbjct: 86  AGRLRHFIDQPAYVDLHWGMFVPAIKGQGTEEQQKKWLSLANKMQIIGCYAQTELGHGSN 145

Query: 183 ASALNTTATKVEGG--WILEG-----QKRWIGNS-TFADVLVIFAR 220
              L TTAT       +++        K W G     +   V++AR
Sbjct: 146 VQGLETTATLDPKTDEFVIHTPTQTASKWWPGGLGKVSTHAVVYAR 191

>2jbr_A P-hydroxyphenylacetate hydroxylase C2 oxygenase C; flavoenzyme hydroxylase, oxidoreductase; 2.3A {Acinetobacter baumannii} PDB: 2jbs_A* 2jbt_A* Length = 422

 Score = 79.8 bits (197), Expect = 2e-17
 Identities = 30/166 (18%), Positives = 54/166 (32%), Gaps = 16/166 (9%)

Query: 56  TSEEQAVRMKVRECMEKEIAPIMAEYWEKAEFPFHVIPKLGALRVAGGTI-KGYGCPGHS 114
                ++  K+++ +  +IA       +    P   I  L  + +      K YG    S
Sbjct: 34  DVSGVSMLEKIQQ-ILPQIAKNAESAEQLRRVPDENIKLLKEIGLHRAFQPKVYGGLEMS 92

Query: 115 VTGAAIAIAEIARVDASCSTFILVHSSLAMLTIALCGSEEQKQKYLPSLAQLNTIACWAL 174
           +   A  I  +A   A  +    +  + +   IA+   + Q +              W  
Sbjct: 93  LPDFANCIVTLAGACAGTAWAFSLLCTHSHQ-IAMFSKQLQDEI-------------WLK 138

Query: 175 TEPAYGSDASALNTTATKVEGGWILEGQKRWIGNSTFADVLVIFAR 220
              A  S + A      +VEGG IL G   W      A+  ++   
Sbjct: 139 DPDATASSSIAPFGKVEEVEGGIILNGDYGWSSGCDHAEYAIVGFN 184

>2wbi_A Acyl-COA dehydrogenase family member 11; human, phosphoprotein, oxidoreducta; HET: FAD; 2.80A {Homo sapiens} Length = 428

 Score = 68.1 bits (167), Expect = 2e-13
 Identities = 49/234 (20%), Positives = 86/234 (36%), Gaps = 48/234 (20%)

Query: 31  AFPQATPASKFPPCASDYYQFDDLLTSEEQAVRMKVRECMEKEIAPIMAEYWE------K 84
           +  + T ++  P   +    F    T + Q V +KV+  M++ I P   E  E       
Sbjct: 1   SMSKRTFSTVLPQIDTTGQLFV--QTRKGQEVLIKVKHFMKQHILPAEKEVTEFYVQNEN 58

Query: 85  AEFPFHVIPKLGALRVAGGTIKGYGC--------PGHSVTGAAIAIAEIARVDASCSTFI 136
           +   +     +  L+      K  G          G S    A+ IAE            
Sbjct: 59  SVDKWGKPLVIDKLKEM---AKVEGLWNLFLPAVSGLSHVDYAL-IAEE----------- 103

Query: 137 LVHSSLA-------------MLTIALCGSEEQKQKYLPSLAQLNTIACWALTEPAY-GSD 182
                 A             M  + L GSEEQK+++L  L Q N  +C+ +TEP    SD
Sbjct: 104 TGKCFFAPDVFNCQAPDTGNMEVLHLYGSEEQKKQWLEPLLQGNITSCFCMTEPDVASSD 163

Query: 183 ASALNTTATKVEGGWILEGQKRWIGNSTFAD--VLVIFARNTTTNQINGYANQS 234
           A+ +  +  + E  +++ G+K W   +      + ++  R T    ++ +   S
Sbjct: 164 ATNIECSIQRDEDSYVINGKKWWSSGAGNPKCKIAIVLGR-TQNTSLSRHKQHS 216

>2rfq_A 3-HSA hydroxylase, oxygenase; rhodococcus SP. RHA1, structural genomics protein structure initiative, midwest center for structural genomics, MCSG; HET: 1PS; 1.65A {Rhodococcus SP} PDB: 3aff_A 3afe_A Length = 394

 Score = 60.1 bits (146), Expect = 8e-11
 Identities = 27/157 (17%), Positives = 46/157 (29%), Gaps = 25/157 (15%)

Query: 72  KEIAPIMAEYWEKAE----FPFHVIPKLGALRVAGGTI-KGYGCPGHSVTGAAIAIAEIA 126
             + P + E  ++ E     P   +  L           + +G           A+ +IA
Sbjct: 17  DALLPTLRERAQETEDLRRIPDDSMKALQETGFFRLLQPEQWGGYQADPVLFYSAVRKIA 76

Query: 127 RVDAS---CSTFILVHSSLAMLTIALCGSEEQKQKYLPSLAQLNTIACWALTEPAYGSDA 183
               S    S+ I VH+      +AL   + Q+               W        S +
Sbjct: 77  SACGSTGWVSSIIGVHN----WHLALFSQQAQEDV-------------WGNDTDVRISSS 119

Query: 184 SALNTTATKVEGGWILEGQKRWIGNSTFADVLVIFAR 220
            A       V+GG+ + G   W      A   V+   
Sbjct: 120 YAPMGAGQVVDGGYTVNGAWAWSSGCDHASWAVLGGP 156

>3djl_A Protein AIDB; alpha helix, beta-barrel, FAD, flavoprotein, oxidoreductase; HET: FAD; 1.70A {Escherichia coli} PDB: 3u33_A* Length = 541

 Score = 52.4 bits (126), Expect = 4e-08
 Identities = 24/119 (20%), Positives = 40/119 (33%), Gaps = 23/119 (19%)

Query: 107 GYGCPGHSVTGAAIAIAEIARVDASCSTFILVHSSLAMLTIALCGSEEQKQKYLPSLAQL 166
           G  CP  ++T AA  +              L+             +     +Y   L   
Sbjct: 130 GSLCPI-TMTFAATPL--------------LLQM--LPAPFQDWTTPLLSDRYDSHLLPG 172

Query: 167 NTIACW----ALTEPAYGSDASALNTTATKVEGG-WILEGQKRWIGNSTFADVLVIFAR 220
                      +TE   GSD  +  T A ++E G + L G K W  +   +D  ++ A+
Sbjct: 173 GQKRGLLIGMGMTEKQGGSDVMSNTTRAERLEDGSYRLVGHK-WFFSVPQSDAHLVLAQ 230

>2or0_A Hydroxylase; APC7385, rhodococcus SP. RHA1, structu genomics, PSI-2, protein structure initiative, midwest CENT structural genomics, MCSG; HET: MSE; 2.10A {Rhodococcus SP} Length = 414

 Score = 52.1 bits (125), Expect = 4e-08
 Identities = 22/157 (14%), Positives = 48/157 (30%), Gaps = 25/157 (15%)

Query: 72  KEIAPIMAEYWEKAE----FPFHVIPKLGALRVAGGTI-KGYGCPGHSVTGAAIAIAEIA 126
           + +A  +     ++E            L           + YG         A  +  +A
Sbjct: 30  EVVAEEIRGQAVQSEADCRLTDAAAGLLRDSGAIRLLQPRLYGGYEVHPREFAETVMGVA 89

Query: 127 RVDAS---CSTFILVHSSLAMLTIALCGSEEQKQKYLPSLAQLNTIACWALTEPAYGSDA 183
            +D +    +  + VH       +A    + Q++              W      + +  
Sbjct: 90  ALDGASGWVTGIVGVHP----WELAFADPQVQEE-------------IWGEDNDTWMASP 132

Query: 184 SALNTTATKVEGGWILEGQKRWIGNSTFADVLVIFAR 220
            A    AT V+GG++L+G+  +   +       + A 
Sbjct: 133 YAPMGVATPVDGGYVLKGRWSFSSGTDHCQWAFLGAM 169

>1u8v_A Gamma-aminobutyrate metabolism dehydratase/isomerase; ALFA-helixes, beta-strands, lyase; HET: FAD; 1.60A {Clostridium aminobutyricum} SCOP: a.29.3.1 e.6.1.1 Length = 490

 Score = 42.5 bits (99), Expect = 7e-05
 Identities = 20/127 (15%), Positives = 38/127 (29%), Gaps = 16/127 (12%)

Query: 121 AIAEIARVDASCSTFILVHSSLAMLTIALCGSEEQK--------QKYLPSLAQLNTIACW 172
               + +  ASC    +   +   +       +++          +YL  + + + I   
Sbjct: 88  MQRLLGQKTASCFQRCVGMDAFNAVFSTTYEIDQKYGTNYHKNFTEYLKYIQENDLIVDG 147

Query: 173 ALTEPAYG--------SDASALNTTATKVEGGWILEGQKRWIGNSTFADVLVIFARNTTT 224
           A+T+P            D         K E G ++ G K     S  +   +I      T
Sbjct: 148 AMTDPKGDRGLAPSAQKDPDLFLRIVEKREDGIVVRGAKAHQTGSINSHEHIIMPTIAMT 207

Query: 225 NQINGYA 231
                YA
Sbjct: 208 EADKDYA 214

>3hwc_A Chlorophenol-4-monooxygenase component 2; beta barrel, helix bundle, oxidoreductase; 2.50A {Burkholderia cepacia} Length = 515

 Score = 40.2 bits (93), Expect = 3e-04
 Identities = 12/73 (16%), Positives = 20/73 (27%), Gaps = 6/73 (8%)

Query: 154 EQKQKYLPSLAQLNTIACWALTEP------AYGSDASALNTTATKVEGGWILEGQKRWIG 207
           +    +L  L + +        +P            S       K + G I+ G K    
Sbjct: 133 QNIHNFLKLLREKDLNCPLNFVDPQTDRSSDAAQARSPNLRIVEKTDDGIIVNGVKAVGT 192

Query: 208 NSTFADVLVIFAR 220
              F D + I   
Sbjct: 193 GIAFGDYMHIGCL 205

>2yyk_A 4-hydroxyphenylacetate-3-hydroxylase; structurome, riken spring-8 center, oxygnase component, 4- hydroxyphenylacetate 3-monooxygenase; 1.60A {Thermus thermophilus} PDB: 2yyl_A* 2yym_A* 2yyi_A* 2yyg_A* 2yyj_A* Length = 481

 Score = 40.2 bits (93), Expect = 4e-04
 Identities = 13/76 (17%), Positives = 22/76 (28%), Gaps = 8/76 (10%)

Query: 154 EQKQKYLPSLAQLNTIACWALTEPAYG--------SDASALNTTATKVEGGWILEGQKRW 205
           E  + Y   L   +     ALT P            D         + E G ++ G +  
Sbjct: 124 ENVRNYYRYLRDQDLATTHALTNPQVNRARPPSGQPDPYIPVGVVKQTEKGIVVRGARMT 183

Query: 206 IGNSTFADVLVIFARN 221
                  +VL+  +  
Sbjct: 184 ATFPLADEVLIFPSIL 199

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	240
2ix5_A	436	Acyl-coenzyme A oxidase 4, peroxisomal; FAD, ACX4,	100.0
2d29_A	387	Acyl-COA dehydrogenase; structural genomics, NPPSF	100.0
3ii9_A	396	Glutaryl-COA dehydrogenase; slipchip, microfluidic	100.0
3p4t_A	403	Putative acyl-COA dehydrogenase; ssgcid, structura	100.0
2eba_A	385	Putative glutaryl-COA dehydrogenase; thermus therm	100.0
3sf6_A	403	Glutaryl-COA dehydrogenase; ssgcid, NIH, niaid, SB	100.0
3swo_A	399	Glutaryl-COA dehydrogenase; ssgcid, glutaryl-COA d	100.0
3nf4_A	387	Acyl-COA dehydrogenase; seattle structural genomic	100.0
3pfd_A	393	Acyl-COA dehydrogenase; structural genomics, seatt	100.0
2vig_A	391	Short-chain specific acyl-COA dehydrogenase,; fatt	100.0
1ukw_A	379	Acyl-COA dehydrogenase; oxidoreductase, riken stru	100.0
1buc_A	383	Butyryl-COA dehydrogenase; acyl-COA dehydrogenase	100.0
1rx0_A	393	Acyl-COA dehydrogenase family member 8, mitochondr	100.0
1egd_A	396	Medium chain acyl-COA dehydrogenase; flavoprotein,	100.0
2jif_A	404	Short/branched chain specific acyl-COA dehydrogen;	100.0
3r7k_A	403	Probable acyl COA dehydrogenase; ssgcid, structura	100.0
2dvl_A	372	Acyl-COA dehydrogenase; structural genomics, NPPSF	100.0
2pg0_A	385	Acyl-COA dehydrogenase; GK1316, geobacillus kausto	100.0
1ivh_A	394	Isovaleryl-COA dehydrogenase; oxidoreductase, acyl	100.0
1siq_A	392	GCD, glutaryl-COA dehydrogenase; acyl-COA dehydrog	100.0
3mpi_A	397	Glutaryl-COA dehydrogenase; alpha-beta fold, oxido	100.0
4hr3_A	415	Putative acyl-COA dehydrogenase; ssgcid, seattle s	100.0
2z1q_A	577	Acyl-COA dehydrogenase; FAD, structural genomics,	100.0
1r2j_A	366	Protein FKBI; polyketide synthase, polyketide, acy	100.0
2uxw_A	607	VERY-long-chain specific acyl-COA dehydrogenase; f	100.0
3owa_A	597	Acyl-COA dehydrogenase; structural genomics, cente	100.0
2c12_A	439	Nitroalkane oxidase; oxidoreductase, flavoenzyme,	100.0
3mkh_A	438	Nitroalkane oxidase; oxidoreductase flavoenzyme, a	100.0
2wbi_A	428	Acyl-COA dehydrogenase family member 11; human, ph	100.0
3m9v_A	439	FAD-dependent oxidoreductase; KIJD3, fatty acyl-CO	100.0
3mxl_A	395	Nitrososynthase; flavin monooxygenase, acyl-COA de	100.0
2or0_A	414	Hydroxylase; APC7385, rhodococcus SP. RHA1, struct	99.98
2jbr_A	422	P-hydroxyphenylacetate hydroxylase C2 oxygenase C;	99.97
2rfq_A	394	3-HSA hydroxylase, oxygenase; rhodococcus SP. RHA1	99.97
1w07_A	659	Acyl-COA oxidase; oxidoreductase, peroxisomal beta	99.93
3djl_A	541	Protein AIDB; alpha helix, beta-barrel, FAD, flavo	99.9
2ddh_A	661	Acyl-COA oxidase; beta barrel, alpha UP-DOWN bundl	99.85
1u8v_A	490	Gamma-aminobutyrate metabolism dehydratase/isomera	99.74
2yyk_A	481	4-hydroxyphenylacetate-3-hydroxylase; structurome,	99.69
3hwc_A	515	Chlorophenol-4-monooxygenase component 2; beta bar	99.57
4g5e_A	517	2,4,6-trichlorophenol 4-monooxygenase; oxidoreduct	98.62

>2ix5_A Acyl-coenzyme A oxidase 4, peroxisomal; FAD, ACX4, flavin, peroxisome, glyoxysome, fatty acid metabo lipid metabolism, acyl-COA oxidase; HET: CAA FAD; 2.7A {Arabidopsis thaliana} PDB: 2ix6_A*

Probab=100.00  E-value=7.5e-42  Score=305.00  Aligned_cols=231  Identities=76%  Similarity=1.229  Sum_probs=197.1

Q ss_pred             CCCCCchhhhhhccccccCCCcccccccCCCCCCCCCCCCCCCCcccCCCCCCHHHHHHHHHHHHHHHhhccccHHHHHH
Q 026317            4 HSSKHQDDVDKNARSSYFNLPALDISVAFPQATPASKFPPCASDYYQFDDLLTSEEQAVRMKVRECMEKEIAPIMAEYWE   83 (240)
Q Consensus         4 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~m~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~d~   83 (240)
                      .++.++.....+.+..+...+..+.....+...+....|+...|++.|++.++++++++++.+|+|+++.+.|...+.++
T Consensus         4 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~e~~~l~~~~r~f~~~~~~p~~~~~~~   83 (436)
T 2ix5_A            4 LSSADRASNEKKVKSSYFDLPPMEMSVAFPQATPASTFPPCTSDYYHFNDLLTPEEQAIRKKVRECMEKEVAPIMTEYWE   83 (436)
T ss_dssp             -------------CCSSSSSCCCCHHHHCCSSCCTTSCCCCCSCTTCGGGGSCHHHHHHHHHHHHHHHHHTHHHHHHHHH
T ss_pred             hhhhhhhccccccchhhcCCChhhhhhhccccCCCCCCCCcccchhhcCCCCCHHHHHHHHHHHHHHHhhCChhhHHHHh
Confidence            34455555666777788887777766555555555566777778999999999999999999999999999988877777


Q ss_pred             hCCCCHHHHHHHHhcCcCCC-ccccCCCCCCCHHHHHHHHHHHHccCCcchHHHHhhhhHHHHHHhccCCHHHHHhhchh
Q 026317           84 KAEFPFHVIPKLGALRVAGG-TIKGYGCPGHSVTGAAIAIAEIARVDASCSTFILVHSSLAMLTIALCGSEEQKQKYLPS  162 (240)
Q Consensus        84 ~~~~~~~~~~~l~~~Gl~~l-~p~~~GG~g~~~~~~~~v~e~la~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~l~~  162 (240)
                      .+.+|.++|++|++.||+++ +| +|||.|+++.+.+.++|+++++|+++++++.+|..++...|..+|+++||++|||+
T Consensus        84 ~~~~p~~~~~~l~e~Gl~~l~~p-e~GG~G~~~~~~~~v~eela~~~~~~~~~~~~~~~~~~~~l~~~gt~~qk~~~l~~  162 (436)
T 2ix5_A           84 KAEFPFHITPKLGAMGVAGGSIK-GYGCPGLSITANAIATAEIARVDASCSTFILVHSSLGMLTIALCGSEAQKEKYLPS  162 (436)
T ss_dssp             HTCCCGGGHHHHHTTTCTTTTCC-STTCCCCCHHHHHHHHHHHHHHCHHHHHHHHHHHTTHHHHHHHHSCHHHHHHHHHH
T ss_pred             cCCCCHHHHHHHHHcCCCcCcCC-CCCCCCCCHHHHHHHHHHHHhhCccHHHHHHhHHHHHHHHHHHhCCHHHHHHHHHH
Confidence            88999999999999999999 98 99999999999999999999999998877777766677788899999999999999


Q ss_pred             hhcCCceEEEEeeCCCCCCCcCCCceEEEEeCCEEEEeeeEeeecCCCCCCEEEEEEEeCCCCCeeEEEEeCC
Q 026317          163 LAQLNTIACWALTEPAYGSDASALNTTATKVEGGWILEGQKRWIGNSTFADVLVIFARNTTTNQINGYANQSI  235 (240)
Q Consensus       163 l~~G~~~~~~a~tEp~~Gsd~~~~~t~a~~~~~g~~LnG~K~~vs~~~~Ad~~~v~a~~~~~~~~~~flVp~~  235 (240)
                      +++|+.++|+++|||++|||+..++|+|++++|||+|||+|.||||+.+|||++|+|++++++++++|+||++
T Consensus       163 l~~G~~~~a~a~tEp~~GSd~~~~~t~A~~~gdg~vLnG~K~~is~a~~Ad~~lv~Ar~~~~~~~~~flV~~~  235 (436)
T 2ix5_A          163 LAQLNTVACWALTEPDNGSDASGLGTTATKVEGGWKINGQKRWIGNSTFADLLIIFARNTTTNQINGFIVKKD  235 (436)
T ss_dssp             HHTTSSCEEEECCBTTBSSCGGGCCCEEEEETTEEEEEEEEEEEETTTTCSEEEEEEEETTTSSEEEEEEETT
T ss_pred             HhCCCeeeEEEecCCCCCCCcccceEEEEEeCCEEEEeeeccCCCCCcccCEEEEEEEECCCCcEEEEEEECC
Confidence            9999999999999999999999999999999999999999999999999999999999875567999999987

>2d29_A Acyl-COA dehydrogenase; structural genomics, NPPSFA, national project protein structural and functional analyses; HET: FAD; 1.65A {Thermus thermophilus} SCOP: a.29.3.1 e.6.1.1 PDB: 1ws9_A 2cx9_A*

Probab=100.00  E-value=1.7e-39  Score=285.77  Aligned_cols=191  Identities=36%  Similarity=0.499  Sum_probs=175.6

Q ss_pred             ccCCCCCCHHHHHHHHHHHHHHHhhccccHHHHHHhCCCCHHHHHHHHhcCcCCC-ccccCCCCCCCHHHHHHHHHHHHc
Q 026317           49 YQFDDLLTSEEQAVRMKVRECMEKEIAPIMAEYWEKAEFPFHVIPKLGALRVAGG-TIKGYGCPGHSVTGAAIAIAEIAR  127 (240)
Q Consensus        49 ~~m~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~l~~~Gl~~l-~p~~~GG~g~~~~~~~~v~e~la~  127 (240)
                      |.|++.++++++++++.+++|+++.+.|.+.+.|+.+.+|.++|++|++.||+++ +|++|||.|+++.+++.++|++++
T Consensus         1 ~~m~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~l~~~Gl~~~~~P~~~GG~g~~~~~~~~v~eel~~   80 (387)
T 2d29_A            1 MGLWFEEGAEERQVLGPFREFLKAEVAPGAAERDRTGAFPWDLVRKLAEFGVFGALVPEAYGGAGLSTRLFARMVEAIAY   80 (387)
T ss_dssp             -CCTTSCCHHHHHHHHHHHHHHHHHTGGGHHHHHHHCCCCHHHHHHHHTTTGGGSSSCGGGTCCCCCHHHHHHHHHHHHH
T ss_pred             CCCCCCCCHHHHHHHHHHHHHHHHhcchhHHHHhhcCCCCHHHHHHHHHCCCCCCCCChhhCCCCCCHHHHHHHHHHHHh
Confidence            3588899999999999999999999999988888899999999999999999999 999999999999999999999999


Q ss_pred             cCCcchHHHHhhhhHHHHHHhccCCHHHHHhhchhhhcCCceEEEEeeCCCCCCCcCCCceEEEEeCCEEEEeeeEeeec
Q 026317          128 VDASCSTFILVHSSLAMLTIALCGSEEQKQKYLPSLAQLNTIACWALTEPAYGSDASALNTTATKVEGGWILEGQKRWIG  207 (240)
Q Consensus       128 ~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~l~~l~~G~~~~~~a~tEp~~Gsd~~~~~t~a~~~~~g~~LnG~K~~vs  207 (240)
                      +|+++++.+.+|..++...|..+|+++||++|+|++++|+.++|+++|||++|||+..++|+|++++|||+|||+|.|||
T Consensus        81 ~~~~~~~~~~~~~~~~~~~l~~~g~~~q~~~~l~~~~~g~~~~~~a~tEp~~Gsd~~~~~t~A~~~~~g~~lnG~K~~~s  160 (387)
T 2d29_A           81 YDGALALTVASHNSLATGHILLAGSEAQKEAFLPKLASGEALGAWGLTEPGSGSDAAALKTKAEKVEGGWRLNGTKQFIT  160 (387)
T ss_dssp             HCHHHHHHHHHHHHTHHHHHHHHCCHHHHHHHHHHHHTSSSCEEEECCBTTBSSSGGGCCCEEEEETTEEEEEEEEEEEE
T ss_pred             hChHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHhCCCceEEEEeCCCCCCCCHhhCceEEEEeCCEEEEEeEEeccC
Confidence            99998877777654567788899999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCCCCCEEEEEEEeCCC-------CCeeEEEEeCCc--eec
Q 026317          208 NSTFADVLVIFARNTTT-------NQINGYANQSIK--FVL  239 (240)
Q Consensus       208 ~~~~Ad~~~v~a~~~~~-------~~~~~flVp~~~--~~~  239 (240)
                      |+..||+++|+|+++++       .++++|+||++.  ++|
T Consensus       161 ~~~~Ad~~~v~a~~~~~~~~~~~~~g~~~flV~~~~pGv~v  201 (387)
T 2d29_A          161 QGSVAGVYVVMARTDPPPSPERKHQGISAFAFFRPERGLKV  201 (387)
T ss_dssp             TTTTCSEEEEEEECSCCSCGGGTTTTEEEEEEECCSSSEEE
T ss_pred             CCCcCCEEEEEEEeCCccccCCCCCCeEEEEEeCCCCCeec
Confidence            99999999999998633       269999999873  544

>3ii9_A Glutaryl-COA dehydrogenase; slipchip, microfluidics, screening, optimization, protein crystallization, structural genomics; HET: PGE PG4; 1.74A {Burkholderia pseudomallei 1710B} PDB: 3eon_A* 3eom_A* 3gqt_A* 3gnc_A* 3d6b_A

Probab=100.00  E-value=3.7e-40  Score=290.79  Aligned_cols=194  Identities=33%  Similarity=0.534  Sum_probs=173.7

Q ss_pred             CCcccCCCCCCHHHHHHHHHHHHHHHhhccccHHHHHHhCCCCHHHHHHHHhcCcCCC-ccccCCCCCCCHHHHHHHHHH
Q 026317           46 SDYYQFDDLLTSEEQAVRMKVRECMEKEIAPIMAEYWEKAEFPFHVIPKLGALRVAGG-TIKGYGCPGHSVTGAAIAIAE  124 (240)
Q Consensus        46 ~~~~~m~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~l~~~Gl~~l-~p~~~GG~g~~~~~~~~v~e~  124 (240)
                      .|++.|++.++++++++++.+|+|+++.+.|.+.+.++.+.+|.++|++|++.||+++ +|++|||.|+++.+++.++|+
T Consensus        10 ~~~~~m~~~~~~e~~~l~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gl~~l~~P~~~GG~g~~~~~~~~v~ee   89 (396)
T 3ii9_A           10 DDPLLLDQQLADDERMVRDAAHAYAQGKLAPRVTEAFRHETTDAAIFREMGEIGLLGPTIPEQYGGPGLDYVSYGLIARE   89 (396)
T ss_dssp             TSTTCGGGGSCHHHHHHHHHHHHHCCCCCHHHHHHHHHHTCCCTHHHHHHHHTTCSSTTSCGGGTSCCCCHHHHHHHHHH
T ss_pred             CcccccCCCCCHHHHHHHHHHHHHHHHhCChhHHHHHhhCCCCHHHHHHHHhCCCCCCCCChhhCCCCCCHHHHHHHHHH
Confidence            4677899999999999999999999999999988889999999999999999999999 999999999999999999999


Q ss_pred             HHccCCcchHHHHhhhhHHHHHHhccCCHHHHHhhchhhhcCCceEEEEeeCCCCCCCcCCCceEEEEeCCEEEEeeeEe
Q 026317          125 IARVDASCSTFILVHSSLAMLTIALCGSEEQKQKYLPSLAQLNTIACWALTEPAYGSDASALNTTATKVEGGWILEGQKR  204 (240)
Q Consensus       125 la~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~l~~l~~G~~~~~~a~tEp~~Gsd~~~~~t~a~~~~~g~~LnG~K~  204 (240)
                      ++++|+++++.+.+|..++...|..+|+++||++|||++++|+.++|+++|||++|||+..++|+|++++|||+|||+|.
T Consensus        90 l~~~~~~~~~~~~~~~~~~~~~l~~~g~~~q~~~~l~~~~~G~~~~~~a~tEp~~Gsd~~~~~t~A~~~~~g~~lnG~K~  169 (396)
T 3ii9_A           90 VERVDSGYRSMMSVQSSLVMVPIFEFGSDAQKEKYLPKLATGEWIGCFGLTEPNHGSDPGSMVTRARKVPGGYSLSGSKM  169 (396)
T ss_dssp             HHTTCHHHHHHHHCCCCCCCHHHHHHSCHHHHHHHHHHHHHTSSCEEEECCCCC------CCCCEEEEETTEEEEEEEEE
T ss_pred             HHHhChhHHHHHHhhhhhHHHHHHHhCCHHHHHHHHHHHhCCCeeeEEEecCCCCCCChhhCeeEEEEeCCEEEEEEEEE
Confidence            99999998887777765666778899999999999999999999999999999999999999999999999999999999


Q ss_pred             eecCCCCCCEEEEEEEeCCC--CCeeEEEEeCCc--eec
Q 026317          205 WIGNSTFADVLVIFARNTTT--NQINGYANQSIK--FVL  239 (240)
Q Consensus       205 ~vs~~~~Ad~~~v~a~~~~~--~~~~~flVp~~~--~~~  239 (240)
                      ||||+.+||+++|.|+++++  .++++|+||+++  ++|
T Consensus       170 ~vs~a~~Ad~~~v~a~~~~~g~~g~~~flV~~~~pGv~v  208 (396)
T 3ii9_A          170 WITNSPIADVFVVWAKLDEDGRDEIRGFILEKGCKGLSA  208 (396)
T ss_dssp             EEETGGGCSEEEEEEEEEETTEEEEEEEEEETTCTTEEC
T ss_pred             eECCCccCCEEEEEEEecCCCCCceEEEEEecCCCCeEe
Confidence            99999999999999998522  358999999986  554

>3p4t_A Putative acyl-COA dehydrogenase; ssgcid, structural genomics, seattle structural genomics CEN infectious disease, oxidoreductase; HET: FAO; 1.70A {Mycobacterium smegmatis} PDB: 3oib_A*

Probab=100.00  E-value=2.4e-39  Score=286.18  Aligned_cols=193  Identities=22%  Similarity=0.257  Sum_probs=175.9

Q ss_pred             CcccCCCCCCHHHHHHHHHHHHHHHhhccccHHHHHHhCCCCHHHHHHHHhcCcCCC-ccccCCCCCCCHHHHHHHHHHH
Q 026317           47 DYYQFDDLLTSEEQAVRMKVRECMEKEIAPIMAEYWEKAEFPFHVIPKLGALRVAGG-TIKGYGCPGHSVTGAAIAIAEI  125 (240)
Q Consensus        47 ~~~~m~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~l~~~Gl~~l-~p~~~GG~g~~~~~~~~v~e~l  125 (240)
                      +...|++.++++++++++.+|+|+++.+.|.+.+.|+.+.+|.++|++|++.||+++ +|++|||.|+++.+++.++|++
T Consensus        18 ~~~~M~~~~~~e~~~l~~~~r~~~~~~~~~~~~~~d~~~~~~~~~~~~l~~~Gl~~l~~P~e~GG~g~~~~~~~~v~eel   97 (403)
T 3p4t_A           18 GPGSMSIWTTAEREALRKTVRAFAEREVLPHAHEWERAGEIPRELHRKAAELGLLGAGFPEDAGGSGGDGADPVVICEEM   97 (403)
T ss_dssp             -----CTTSSHHHHHHHHHHHHHHHHHTTTTHHHHHHHTSCCHHHHHHHHHTTCTTBTSCGGGTCCBCCTHHHHHHHHHH
T ss_pred             CCCCCCCCCCHHHHHHHHHHHHHHHHhCchhHHHHhhcCCCCHHHHHHHHHCCCCcCCCChhhCCCCCCHHHHHHHHHHH
Confidence            445588999999999999999999999999999999999999999999999999999 9999999999999999999999


Q ss_pred             HccCCcc-hHHHHhhhhHHHHHHhccCCHHHHHhhchhhhcCCceEEEEeeCCCCCCCcCCCceEEEEeCCEEEEeeeEe
Q 026317          126 ARVDASC-STFILVHSSLAMLTIALCGSEEQKQKYLPSLAQLNTIACWALTEPAYGSDASALNTTATKVEGGWILEGQKR  204 (240)
Q Consensus       126 a~~~~~~-~~~~~~~~~~~~~~l~~~g~~~~~~~~l~~l~~G~~~~~~a~tEp~~Gsd~~~~~t~a~~~~~g~~LnG~K~  204 (240)
                      +++|+++ ++.+.+|..++...|..+|+++||++||+++++|+.++|+++|||++|||+..++|+|++++|||+|||+|.
T Consensus        98 ~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~q~~~~l~~~~~G~~~~~~a~tEp~~Gsd~~~~~t~A~~~~~g~~lnG~K~  177 (403)
T 3p4t_A           98 HYAGSPGGVYASLFTCGIAVPHMIASGDQRLIDTYVRPTLRGEKIGALAITEPGGGSDVGHLRTRADLDGDHYVINGAKT  177 (403)
T ss_dssp             HHTTCCHHHHHHHSTHHHHSHHHHHHTCHHHHHHTHHHHHTTSSCEEEECCBTTBSSCGGGCCCEEEEETTEEEEEEEEE
T ss_pred             HHhCCchhhhHHHhhhhhHHHHHHHhCCHHHHHHHHHHHhCCCeEEEEEecCCCCCCCcccceEEEEEeCCEEEEEEEEE
Confidence            9999998 776666665677788999999999999999999999999999999999999999999999999999999999


Q ss_pred             eecCCCCCCEEEEEEEeCCC--CCeeEEEEeCCc--eec
Q 026317          205 WIGNSTFADVLVIFARNTTT--NQINGYANQSIK--FVL  239 (240)
Q Consensus       205 ~vs~~~~Ad~~~v~a~~~~~--~~~~~flVp~~~--~~~  239 (240)
                      ||||+..||+++|+|+++++  +++++|+||+++  ++|
T Consensus       178 ~vs~a~~Ad~~~v~a~~~~~~~~g~~~flV~~~~pGv~v  216 (403)
T 3p4t_A          178 YITSGVRADYVVTAARTGGPGAGGVSLIVVDKGTPGFEV  216 (403)
T ss_dssp             EEETTTTCSEEEEEEECSSSSGGGEEEEEEETTCTTEEE
T ss_pred             EecCCcccCEEEEEEEeCCCCCCceEEEEEeCCCCCeEe
Confidence            99999999999999998642  579999999986  654

>2eba_A Putative glutaryl-COA dehydrogenase; thermus thermophilius, FAD, STRU genomics, NPPSFA; HET: FAD; 2.21A {Thermus thermophilus}

Probab=100.00  E-value=1.9e-39  Score=285.17  Aligned_cols=189  Identities=37%  Similarity=0.663  Sum_probs=172.6

Q ss_pred             CCcccCCCCCCHHHHHHHHHHHHHHHhhccccHHHHHHhCCCCHHHHHHHHhcCcCCC-ccccCCCCCCCHHHHHHHHHH
Q 026317           46 SDYYQFDDLLTSEEQAVRMKVRECMEKEIAPIMAEYWEKAEFPFHVIPKLGALRVAGG-TIKGYGCPGHSVTGAAIAIAE  124 (240)
Q Consensus        46 ~~~~~m~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~l~~~Gl~~l-~p~~~GG~g~~~~~~~~v~e~  124 (240)
                      .|.+.|++.++++++++++.+++|+.+.+.|.+.+.|+.+.+|.++|++|++.||+++ +|++|||.|+++.+++.++|+
T Consensus         2 ~~~~~~~~~~~~~~~~l~~~~r~~~~~~~~~~~~~~d~~~~~~~~~~~~l~~~Gl~~~~~P~~~GG~g~~~~~~~~v~ee   81 (385)
T 2eba_A            2 LDFYALEDLLTPEEKEVQKAARRFLEKEALPHIRDWWEEGVFPTHLIPRFAELGFLGPTLPPEYGGAGVSSAAYGLICYE   81 (385)
T ss_dssp             CCTTCGGGGSCHHHHHHHHHHHHHHHHHTHHHHHHHHHTTCCCGGGHHHHHHHTCSSTTSCGGGTCCCCCHHHHHHHHHH
T ss_pred             CcccccCCCCCHHHHHHHHHHHHHHHHhCCccHHHHHHhCCCCHHHHHHHHHCCCcCCCCchhhCCCCCCHHHHHHHHHH
Confidence            3556688899999999999999999999999888888889999999999999999999 999999999999999999999


Q ss_pred             HHccCCcchHHHHhhhhHHHHHHhccCCHHHHHhhchhhhcCCceEEEEeeCCCCCCCc-CCCceEEEEeCCEEEEeeeE
Q 026317          125 IARVDASCSTFILVHSSLAMLTIALCGSEEQKQKYLPSLAQLNTIACWALTEPAYGSDA-SALNTTATKVEGGWILEGQK  203 (240)
Q Consensus       125 la~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~l~~l~~G~~~~~~a~tEp~~Gsd~-~~~~t~a~~~~~g~~LnG~K  203 (240)
                      ++++|+++++.+.+|..++...|..+|+++||++|||++++|+.++|+++|||++|||+ ..++|+|++++|||+|||+|
T Consensus        82 la~~~~~~~~~~~~~~~~~~~~l~~~g~~~q~~~~l~~~~~g~~~~~~a~tEp~~Gsd~~~~~~t~A~~~~~g~~lnG~K  161 (385)
T 2eba_A           82 LERVDSGLRSFVSVQSSLVMYPIYAYGSEEQKREFLPKLARGEMVGCFGLTEPDGGSDPYGNMKTRARREGDTWVLNGTK  161 (385)
T ss_dssp             HHHHCHHHHHHHHHHHHTTHHHHHHHSCHHHHHHHHHHHHTTSSCEEEECCCTTCTTSTTTTCCCEEEC--CEEEEEEEE
T ss_pred             HHHhCchHHHHHHHHHhHHHHHHHHhCCHHHHHHHHHHHhCCCeEEEEEeCCCCcCCCccccCeeEEEEeCCEEEEEeee
Confidence            99999999887777765666788899999999999999999999999999999999999 99999999999999999999


Q ss_pred             eeecCCCCCCEEEEEEEeCCCCCeeEEEEeCC
Q 026317          204 RWIGNSTFADVLVIFARNTTTNQINGYANQSI  235 (240)
Q Consensus       204 ~~vs~~~~Ad~~~v~a~~~~~~~~~~flVp~~  235 (240)
                      .||||+..||+++|.|++++. .+++|+||++
T Consensus       162 ~~~s~~~~Ad~~~v~a~~~~g-~~~~flV~~~  192 (385)
T 2eba_A          162 MWITNGNLAHLAVIWAKDEGG-EVLGFLVPTD  192 (385)
T ss_dssp             EEEETTTTCSEEEEEEECC----EEEEEEETT
T ss_pred             eccCCCcccCEEEEEEEeCCC-cEEEEEEeCC
Confidence            999999999999999998632 3899999987

>3sf6_A Glutaryl-COA dehydrogenase; ssgcid, NIH, niaid, SBRI, UW, emerald biostructures, structu genomics; HET: FDA; 1.70A {Mycobacterium smegmatis}

Probab=100.00  E-value=1.9e-39  Score=286.81  Aligned_cols=194  Identities=37%  Similarity=0.643  Sum_probs=181.0

Q ss_pred             CCCCCcccCCCCCCHHHHHHHHHHHHHHHhhccccHHHHHHhCCCC-HHHHHHHHhcCcCCC-ccccCCCCCCCHHHHHH
Q 026317           43 PCASDYYQFDDLLTSEEQAVRMKVRECMEKEIAPIMAEYWEKAEFP-FHVIPKLGALRVAGG-TIKGYGCPGHSVTGAAI  120 (240)
Q Consensus        43 ~~~~~~~~m~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~d~~~~~~-~~~~~~l~~~Gl~~l-~p~~~GG~g~~~~~~~~  120 (240)
                      ..+.|+..|++.++++++++++.+|+|+.+.+.|.+.+.++.+.+| .++|++|++.||+++ + ++|||.|+++.+++.
T Consensus        18 ~~~~~~~~m~~~l~~e~~~l~~~~r~~~~~~~~~~~~~~~~~~~~p~~~~~~~l~~~Gl~~l~~-~e~GG~g~~~~~~~~   96 (403)
T 3sf6_A           18 RGADDLIGINAVLSAEEREIRDTVRSVVQRRIKPHIASWYEDGELPARELAVELGELGLLGMHL-KGYGCAGMSAVAYGL   96 (403)
T ss_dssp             CCHHHHHTCGGGSCHHHHHHHHHHHHHHHHHTTTTHHHHHHHTCCCHHHHHHHHHHTTCSSTTS-CSTTCCCCCHHHHHH
T ss_pred             CCCcchhccCCCCCHHHHHHHHHHHHHHHHhcChhHHHHHhcCCCCHHHHHHHHHHCCCCcccc-hhhCCCCCCHHHHHH
Confidence            3445778899999999999999999999999999998899999999 999999999999999 9 999999999999999


Q ss_pred             HHHHHHccCCcchHHHHhhhhHHHHHHhccCCHHHHHhhchhhhcCCceEEEEeeCCCCCCCcCCCceEEEEeCCEEEEe
Q 026317          121 AIAEIARVDASCSTFILVHSSLAMLTIALCGSEEQKQKYLPSLAQLNTIACWALTEPAYGSDASALNTTATKVEGGWILE  200 (240)
Q Consensus       121 v~e~la~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~l~~l~~G~~~~~~a~tEp~~Gsd~~~~~t~a~~~~~g~~Ln  200 (240)
                      ++|+++++|+++++++.+|..++...|..+|+++||++|||++++|+.++|+++|||++|||+..++|+|++++|||+||
T Consensus        97 v~eela~~~~~~~~~~~~~~~~~~~~l~~~g~~~q~~~~l~~~~~G~~~~~~a~tEp~~Gsd~~~~~t~A~~~~~g~~ln  176 (403)
T 3sf6_A           97 ACLELEAGDSGIRSLVSVQGSLAMYAIHAFGSDEQKDQWLPDMASGHRIGCFGLTEPDHGSDPAGMRTRATRSGDDWILT  176 (403)
T ss_dssp             HHHHHHHHCHHHHHHHHHHHHTHHHHHHHHCCHHHHHHHHHHHHTTSSCEEEECCBTTBSSCGGGCCCEEEEETTEEEEE
T ss_pred             HHHHHHHhcccHHHHHHHhhhhHHHHHHHhCCHHHHHHHHHHHhCCCceEEEEEccCCCCCCchhcEEEEEEECCEEEEE
Confidence            99999999999888777776666788999999999999999999999999999999999999999999999999999999


Q ss_pred             eeEeeecCCCCCCEEEEEEEeCCCCCeeEEEEeCCc--eec
Q 026317          201 GQKRWIGNSTFADVLVIFARNTTTNQINGYANQSIK--FVL  239 (240)
Q Consensus       201 G~K~~vs~~~~Ad~~~v~a~~~~~~~~~~flVp~~~--~~~  239 (240)
                      |+|.||||+..||+++|+|+++  +++++|+||++.  ++|
T Consensus       177 G~K~~is~a~~Ad~~~v~ar~~--~g~~~flV~~~~pGv~v  215 (403)
T 3sf6_A          177 GTKMWITNGSVADVAVVWARTD--EGIRGFVVPTDTPGFTA  215 (403)
T ss_dssp             EEEEEEETGGGCSEEEEEEEET--TEEEEEEEETTSTTEEE
T ss_pred             EEEEeecCCcccCEEEEEEEeC--CceEEEEEECCCCCeEe
Confidence            9999999999999999999986  469999999986  554

>3swo_A Glutaryl-COA dehydrogenase; ssgcid, glutaryl-COA dehdrogenase, mycobacerium smegmatis, S genomics; HET: FDA; 1.45A {Mycobacterium smegmatis}

Probab=100.00  E-value=1.7e-39  Score=286.76  Aligned_cols=192  Identities=33%  Similarity=0.635  Sum_probs=180.1

Q ss_pred             CCCcccCCCCCCHHHHHHHHHHHHHHHhhccccHHHHHHhCCCCHHHHHHHHhcCcCCC-ccccCCCCCCCHHHHHHHHH
Q 026317           45 ASDYYQFDDLLTSEEQAVRMKVRECMEKEIAPIMAEYWEKAEFPFHVIPKLGALRVAGG-TIKGYGCPGHSVTGAAIAIA  123 (240)
Q Consensus        45 ~~~~~~m~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~l~~~Gl~~l-~p~~~GG~g~~~~~~~~v~e  123 (240)
                      +.|+++|++.++++++++++.+|+|+.+++.|.+.+.++.+.+|.++|++|++.||+++ + ++|||.|+++.+++.++|
T Consensus        16 ~~~~~~m~~~l~~e~~~l~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gl~~l~~-~e~GG~g~~~~~~~~v~e   94 (399)
T 3swo_A           16 PLELFDTDRLLDQDERDIAATVRQFVDTRLKPNVEGWFESATLPSELAKEFGNLGVLGMHL-QGYGCAGTNAVSYGLACM   94 (399)
T ss_dssp             HHHHHTGGGGSCHHHHHHHHHHHHHHHHHTHHHHHHHHHHTCCCTTHHHHHHHHTCTTTTS-CSTTCCCCCHHHHHHHHH
T ss_pred             ccccccCCCCCCHHHHHHHHHHHHHHHHhCChhHHHHHhhCCCCHHHHHHHHHCCCCcCCh-hhhCCCCCCHHHHHHHHH
Confidence            45788899999999999999999999999999988889999999999999999999999 9 999999999999999999


Q ss_pred             HHHccCCcchHHHHhhhhHHHHHHhccCCHHHHHhhchhhhcCCceEEEEeeCCCCCCCcCCCceEEEEeCCEEEEeeeE
Q 026317          124 EIARVDASCSTFILVHSSLAMLTIALCGSEEQKQKYLPSLAQLNTIACWALTEPAYGSDASALNTTATKVEGGWILEGQK  203 (240)
Q Consensus       124 ~la~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~l~~l~~G~~~~~~a~tEp~~Gsd~~~~~t~a~~~~~g~~LnG~K  203 (240)
                      +++++|+++++++.+|..++...|..+|+++||++|||++++|+.++|+++|||++|||+.+++|+|++++|||+|||+|
T Consensus        95 el~~~~~~~~~~~~~~~~~~~~~l~~~g~~~q~~~~l~~~~~G~~~~~~a~tEp~~Gsd~~~~~t~A~~~~~g~~lnG~K  174 (399)
T 3swo_A           95 ELEAGDSGFRSFVSVQGSLSMFSIYRYGSEEQKNEWLPRLAAGDAIGCFGLTEPDFGSNPAGMRTRARRDGSDWILNGTK  174 (399)
T ss_dssp             HHHHHCHHHHHHHHHHTTTHHHHHHHHCCHHHHHHHHHHHHHTSSCEEEECCBTTBSSCGGGCCCEEEEETTEEEEEEEE
T ss_pred             HHHHhCccHHHHHHHHhhhhhhHHHhcCCHHHHHHHHHHHhCCCeeeEEEecCCCCCCCCccceEEEEEeCCEEEEEEEE
Confidence            99999999888777776677788999999999999999999999999999999999999999999999999999999999


Q ss_pred             eeecCCCCCCEEEEEEEeCCCCCeeEEEEeCCc--eec
Q 026317          204 RWIGNSTFADVLVIFARNTTTNQINGYANQSIK--FVL  239 (240)
Q Consensus       204 ~~vs~~~~Ad~~~v~a~~~~~~~~~~flVp~~~--~~~  239 (240)
                      .||||+..||+++|.|+++  +++++|+||+++  ++|
T Consensus       175 ~~vs~a~~Ad~~~v~a~~~--~g~~~flV~~~~pGv~v  210 (399)
T 3swo_A          175 MWITNGNLADVATVWAQTD--DGIRGFLVPTDTPGFTA  210 (399)
T ss_dssp             EEEETTTTCSEEEEEEBCT--TSCEEEEEETTSTTEEE
T ss_pred             EeECCCCccCEEEEEEEeC--CceEEEEEeCCCCCeEe
Confidence            9999999999999999986  569999999886  554

>3nf4_A Acyl-COA dehydrogenase; seattle structural genomics center for infectious disease, S FAD, FADH, tuberculosis, oxidoredu; HET: FAD; 2.35A {Mycobacterium thermoresistibile}

Probab=100.00  E-value=6.7e-39  Score=281.86  Aligned_cols=187  Identities=28%  Similarity=0.429  Sum_probs=174.5

Q ss_pred             CCCCCHHHHHHHHHHHHHHHhhccccHHHHHHhCCCCHHHHHHHHhcCcCCC-ccccCCCCCCCHHHHHHHHHHHHccCC
Q 026317           52 DDLLTSEEQAVRMKVRECMEKEIAPIMAEYWEKAEFPFHVIPKLGALRVAGG-TIKGYGCPGHSVTGAAIAIAEIARVDA  130 (240)
Q Consensus        52 ~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~l~~~Gl~~l-~p~~~GG~g~~~~~~~~v~e~la~~~~  130 (240)
                      ++.++++++++++.+++|+++.+.|.+.+.|+.+.+|.++|++|++.||+++ +|++|||.|+++.+++.++|+++++|+
T Consensus        13 ~~~~~~~~~~l~~~~r~~~~~~~~~~~~~~d~~~~~~~~~~~~l~~~G~~~~~~P~~~GG~g~~~~~~~~v~eel~~~~~   92 (387)
T 3nf4_A           13 RLLPSQEAAELIELTREIADKVLDPIVDRHEKDETYPEGVFEQLGAAGLLSLPQPEEWGGGGQPYEVYLQVLEEIAARWA   92 (387)
T ss_dssp             CCCSSHHHHHHHHHHHHHHHHHTTTTHHHHHHHTCCCTTHHHHHHTTTTTSTTSCGGGTCCCCCHHHHHHHHHHHHTTCH
T ss_pred             cccCCHHHHHHHHHHHHHHHHhCCccHHHHhhhCCCCHHHHHHHHHCCCCCCCCCHhhCCCCCCHHHHHHHHHHHHHhCc
Confidence            5778999999999999999999999999899999999999999999999999 999999999999999999999999999


Q ss_pred             cchHHHHhhhhHHHHHHhccCCHHHHHhhchhhhcCCceEEEEeeCCCCCCCcCCCceEEEEeCCEEEEeeeEeeecCCC
Q 026317          131 SCSTFILVHSSLAMLTIALCGSEEQKQKYLPSLAQLNTIACWALTEPAYGSDASALNTTATKVEGGWILEGQKRWIGNST  210 (240)
Q Consensus       131 ~~~~~~~~~~~~~~~~l~~~g~~~~~~~~l~~l~~G~~~~~~a~tEp~~Gsd~~~~~t~a~~~~~g~~LnG~K~~vs~~~  210 (240)
                      ++++++.+|. ++...+..+|+++||++|+|++++|+.++|+++|||++|||+..++|+|++++|||+|||+|.|+||+.
T Consensus        93 ~~~~~~~~~~-~~~~~l~~~g~~~q~~~~l~~~~~g~~~~~~a~tEp~~gsd~~~~~t~A~~~~~g~~lnG~K~~~s~~~  171 (387)
T 3nf4_A           93 SVAVAVSVHS-LSSHPLLVFGTEEQKKRWLPGMLSGEQIGAYSLSEPQAGSDAAALRCAATPTDGGYVINGSKSWITHGG  171 (387)
T ss_dssp             HHHHHHHHHH-HHTHHHHHHSCHHHHHHHHHHHTTSSCCEEEECCBTTBSSCGGGCCCEEEEETTEEEEEEEEEEEETTT
T ss_pred             hHHHHHHHHH-HHHHHHHHhCCHHHHHHHHHHHhCCCeeEEEEEcCCCCCCChhhCEEEEEEeCCEEEEEeEEecccCCc
Confidence            9988777774 667788899999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCCEEEEEEEeC-CCCCeeEEEEeCCc--eec
Q 026317          211 FADVLVIFARNT-TTNQINGYANQSIK--FVL  239 (240)
Q Consensus       211 ~Ad~~~v~a~~~-~~~~~~~flVp~~~--~~~  239 (240)
                      .||+++|+|+++ +.+++++|+||+++  ++|
T Consensus       172 ~Ad~~~v~a~~~~~~~g~~~flV~~~~pGv~~  203 (387)
T 3nf4_A          172 KADFYTLFARTGEGSRGVSCFLVPADQPGLSF  203 (387)
T ss_dssp             TCSEEEEEEECC--CCCEEEEEEETTCTTEEE
T ss_pred             ccCEEEEEEEeCCCCCceEEEEEECCCCCeEe
Confidence            999999999986 33579999999986  554

>3pfd_A Acyl-COA dehydrogenase; structural genomics, seattle structural genomics center for infectious disease, ssgcid; HET: FDA; 2.10A {Mycobacterium thermoresistibile}

Probab=100.00  E-value=2.5e-39  Score=285.19  Aligned_cols=189  Identities=34%  Similarity=0.446  Sum_probs=168.4

Q ss_pred             cCCCCCCHHHHHHHHHHHHHHHhhccccHHHHHHhCCCCHHHHHHHHhcCcCCC-ccccCCCCCCCHHHHHHHHHHHHcc
Q 026317           50 QFDDLLTSEEQAVRMKVRECMEKEIAPIMAEYWEKAEFPFHVIPKLGALRVAGG-TIKGYGCPGHSVTGAAIAIAEIARV  128 (240)
Q Consensus        50 ~m~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~l~~~Gl~~l-~p~~~GG~g~~~~~~~~v~e~la~~  128 (240)
                      -|+|.++++++++++.+|+|+++.+.|.+.+.|+.+.+|.++|++|++.||+++ +|++|||.|+++.+++.++|+++++
T Consensus        14 ~m~~~~~~e~~~l~~~~r~~~~~~~~~~~~~~d~~~~~~~~~~~~l~~~G~~~~~~P~~~GG~g~~~~~~~~v~eela~~   93 (393)
T 3pfd_A           14 FELFQLPEEHIALREAIRALAEKEIAPYAAEVDEKARFPEEALAALNSSGFSAIHVPEEYGGQGADSVATCIVIEEVARV   93 (393)
T ss_dssp             --------CHHHHHHHHHHHHHHHTGGGHHHHHHTTCCCHHHHHHHHHHTCSCTTSCGGGTCCCCCHHHHHHHHHHHHTT
T ss_pred             ccCCCCCHHHHHHHHHHHHHHHHhCchHHHHHhhhCCCCHHHHHHHHHCCCCCCCCChhHCCCCCCHHHHHHHHHHHHhh
Confidence            378889999999999999999999999999999999999999999999999999 9999999999999999999999999


Q ss_pred             CCcchHHHHhhhhHHHHHHhccCCHHHHHhhchhhhcCCceEEEEeeCCCCCCCcCCCceEEEEeCCEEEEeeeEeeecC
Q 026317          129 DASCSTFILVHSSLAMLTIALCGSEEQKQKYLPSLAQLNTIACWALTEPAYGSDASALNTTATKVEGGWILEGQKRWIGN  208 (240)
Q Consensus       129 ~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~l~~l~~G~~~~~~a~tEp~~Gsd~~~~~t~a~~~~~g~~LnG~K~~vs~  208 (240)
                      |+++++++..| .++...|..+|+++||++|||++++|+.++|+++|||++|||+..++|+|++++|||+|||+|.|+||
T Consensus        94 ~~~~~~~~~~~-~~~~~~l~~~g~~~q~~~~l~~~~~G~~~~~~a~tEp~~gsd~~~~~t~A~~~~~g~~lnG~K~~~s~  172 (393)
T 3pfd_A           94 DCSASLIPAVN-KLGTMGLILRGSEELKKQVLPAVASGEAMASYALSEREAGSDAASMRTRAVADGDDWILNGSKCWITN  172 (393)
T ss_dssp             CHHHHHHHHHH-HHTTHHHHHHCCHHHHHHHHHHHHTTSCCEEEECCBTTBSSCGGGCCCEEEEETTEEEEEEEEEEEET
T ss_pred             CchHHHHHHHH-HHHHHHHHHhCCHHHHHHHHHHHhCCCceeEEEEcCCCCCCCcccCeeEEEEcCCEEEEeeEEEEecC
Confidence            99988866655 35666788899999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCCCCEEEEEEEeCCC---CCeeEEEEeCCc--eec
Q 026317          209 STFADVLVIFARNTTT---NQINGYANQSIK--FVL  239 (240)
Q Consensus       209 ~~~Ad~~~v~a~~~~~---~~~~~flVp~~~--~~~  239 (240)
                      +.+||+++|+|+++++   .++++|+||+++  ++|
T Consensus       173 ~~~Ad~~~v~a~~~~~~~~~g~~~flV~~~~pGv~v  208 (393)
T 3pfd_A          173 GGKSTWYTVMAVTDPDKGANGISAFMVHKDDEGFTV  208 (393)
T ss_dssp             TTTCSEEEEEEESCGGGGGGGEEEEEEETTSTTEEE
T ss_pred             CcccCEEEEEEEeCCCCCCCceEEEEEECCCCCeEe
Confidence            9999999999998643   479999999986  544

>2vig_A Short-chain specific acyl-COA dehydrogenase,; fatty acid metabolism, FAD, polymorphism, flavoprotein, mitochondrion, disease mutation; HET: FAD COS; 1.9A {Homo sapiens} PDB: 1jqi_A*

Probab=100.00  E-value=7.4e-39  Score=282.01  Aligned_cols=189  Identities=32%  Similarity=0.438  Sum_probs=172.0

Q ss_pred             CCCCCCHHHHHHHHHHHHHHHhhccccHHHHHHhCCCCHHHHHHHHhcCcCCC-ccccCCCCCCCHHHHHHHHHHHHccC
Q 026317           51 FDDLLTSEEQAVRMKVRECMEKEIAPIMAEYWEKAEFPFHVIPKLGALRVAGG-TIKGYGCPGHSVTGAAIAIAEIARVD  129 (240)
Q Consensus        51 m~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~l~~~Gl~~l-~p~~~GG~g~~~~~~~~v~e~la~~~  129 (240)
                      |++.++++++++++.+++|+.+.+.|.+.+.|+.+.+|.++|++|++.||+++ +|++|||.|+++.+++.++|+++++|
T Consensus         2 ~~~~~~~~~~~l~~~~r~~~~~~~~~~~~~~d~~~~~~~~~~~~l~~~Gl~~~~~P~~~GG~g~~~~~~~~v~eel~~~~   81 (391)
T 2vig_A            2 QSVELPETHQMLLQTCRDFAEKELFPIAAQVDKEHLFPAAQVKKMGGLGLLAMDVPEELGGAGLDYLAYAIAMEEISRGC   81 (391)
T ss_dssp             ----CCHHHHHHHHHHHHHHHHHTTTTHHHHHHHTCCCHHHHHHHHHHTTTSTTSCGGGTSCCCCHHHHHHHHHHHHHHC
T ss_pred             CCCCCCHHHHHHHHHHHHHHHHhCcccHHHHHhcCCCCHHHHHHHHHCCCCCCCCCHhhCCCCCCHHHHHHHHHHHHhhc
Confidence            56778999999999999999999999888888899999999999999999999 99999999999999999999999999


Q ss_pred             CcchHHHHhhhhHHHHHHhccCCHHHHHhhchhhhcCCceEEEEeeCCCCCCCcCCCceEEEEeCCEEEEeeeEeeecCC
Q 026317          130 ASCSTFILVHSSLAMLTIALCGSEEQKQKYLPSLAQLNTIACWALTEPAYGSDASALNTTATKVEGGWILEGQKRWIGNS  209 (240)
Q Consensus       130 ~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~l~~l~~G~~~~~~a~tEp~~Gsd~~~~~t~a~~~~~g~~LnG~K~~vs~~  209 (240)
                      +++++++.+|..++...|..+|+++||++|||++++|+.++|+++|||++|||+..++|+|++++|||+|||+|.||||+
T Consensus        82 ~~~~~~~~~~~~~~~~~l~~~g~~~q~~~~l~~~~~g~~~~~~a~tEp~~Gsd~~~~~t~A~~~~~g~~lnG~K~~~s~~  161 (391)
T 2vig_A           82 ASTGVIMSVNNSLYLGPILKFGSKEQKQAWVTPFTSGDKIGCFALSEPGNGSDAGAASTTARAEGDSWVLNGTKAWITNA  161 (391)
T ss_dssp             HHHHHHHHHHHHTTHHHHHHHCCHHHHHHHTGGGSSSSCCEEEECCBTTBSSSGGGCCCEEEEETTEEEEEEEEEEEETT
T ss_pred             cHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHhCCCceEEEEecCCCCCCCcccceeEEEEeCCEEEEeeEEEeecCC
Confidence            98888777774456778889999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCCCEEEEEEEeCCC---CCeeEEEEeCCc--eec
Q 026317          210 TFADVLVIFARNTTT---NQINGYANQSIK--FVL  239 (240)
Q Consensus       210 ~~Ad~~~v~a~~~~~---~~~~~flVp~~~--~~~  239 (240)
                      ..||+++|+|+++++   .++++|+||+++  ++|
T Consensus       162 ~~Ad~~~v~a~~~~~~~~~g~~~flV~~~~pGv~v  196 (391)
T 2vig_A          162 WEASAAVVFASTDRALQNKSISAFLVPMPTPGLTL  196 (391)
T ss_dssp             TTCSEEEEEEECCSSSTTSCEEEEEEESSCTTEEE
T ss_pred             CcCCEEEEEEEeCCCCCCCceEEEEEeCCCCCeEe
Confidence            999999999998532   368999999976  654

>1ukw_A Acyl-COA dehydrogenase; oxidoreductase, riken structural genomics/proteomics initiative, RSGI, structural genomics; HET: FAD; 2.40A {Thermus thermophilus} SCOP: a.29.3.1 e.6.1.1

Probab=100.00  E-value=8.7e-39  Score=280.45  Aligned_cols=185  Identities=30%  Similarity=0.444  Sum_probs=172.6

Q ss_pred             CCCCCCHHHHHHHHHHHHHHHhhccccHHHHHHhCCCCHHHHHHHHhcCcCCC-ccccCCCCCCCHHHHHHHHHHHHccC
Q 026317           51 FDDLLTSEEQAVRMKVRECMEKEIAPIMAEYWEKAEFPFHVIPKLGALRVAGG-TIKGYGCPGHSVTGAAIAIAEIARVD  129 (240)
Q Consensus        51 m~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~l~~~Gl~~l-~p~~~GG~g~~~~~~~~v~e~la~~~  129 (240)
                      |++.++++++++++.+++|+++.+.|.+.+.|+.+.+|.++|++|.+.||+++ +|++|||.|+++.+++.++|+++++|
T Consensus         1 M~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~l~~~Gl~~~~~P~~~GG~g~~~~~~~~~~eel~~~~   80 (379)
T 1ukw_A            1 IDFSLTEEQRQLQALARRFAKEVILPVAQEYDEKEEVPWPVIEKLHEVGLLNAIIPEEYGGMGLKMLDEVIVGEELAYAC   80 (379)
T ss_dssp             CBCCCCHHHHHHHHHHHHHHHHTTGGGHHHHHHHTCCCHHHHHHHHHTTCTTTTSCGGGTSCCCCHHHHHHHHHHHHHHC
T ss_pred             CCCCCCHHHHHHHHHHHHHHHHhCchhHHHHhhcCCCCHHHHHHHHHCCCCCcCCChhhCCCCCCHHHHHHHHHHHHHhC
Confidence            67789999999999999999999999888888889999999999999999999 99999999999999999999999999


Q ss_pred             CcchHHHHhhhhHHHHHHhccCCHHHHHhhchhhhcCCceEEEEeeCCCCCCCcCCCceEEEEeCCEEEEeeeEeeecCC
Q 026317          130 ASCSTFILVHSSLAMLTIALCGSEEQKQKYLPSLAQLNTIACWALTEPAYGSDASALNTTATKVEGGWILEGQKRWIGNS  209 (240)
Q Consensus       130 ~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~l~~l~~G~~~~~~a~tEp~~Gsd~~~~~t~a~~~~~g~~LnG~K~~vs~~  209 (240)
                      +++++.+.+| .++...|..+|+++||++|||++++|+.++|+++|||++|||+..++|+|++++|||+|||+|.||||+
T Consensus        81 ~~~~~~~~~~-~~~~~~l~~~g~~~q~~~~l~~~~~g~~~~~~a~tEp~~Gsd~~~~~t~A~~~~~g~~lnG~K~~~s~~  159 (379)
T 1ukw_A           81 MGIYTIPMAS-DLGITPVLLAGTEEQKERFLRPLTEKPALAAFALSEPGNGSDAAALKTRAIRQGDHYVLNGTKMWISNG  159 (379)
T ss_dssp             HHHHHHHHHH-HHHHHHHHHHCCHHHHHHHHGGGTSSSCEEEEECCBTTBSSCGGGCCCEEEEETTEEEEEEEEEEEETT
T ss_pred             chHHHHHHHH-HHHHHHHHHhCCHHHHHHHHHHHhCCCceEEEEecCCCCCcChhhCeEEEEEeCCEEEEEEEEecccCC
Confidence            9988777766 467778889999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCCCEEEEEEEeCCC---CCeeEEEEeCCc
Q 026317          210 TFADVLVIFARNTTT---NQINGYANQSIK  236 (240)
Q Consensus       210 ~~Ad~~~v~a~~~~~---~~~~~flVp~~~  236 (240)
                      ..||+++|+|+++++   .++++|+||++.
T Consensus       160 ~~Ad~~~v~a~~~~~~~~~g~~~flV~~~~  189 (379)
T 1ukw_A          160 GEAEWVVVFATVNPELRHKGVVALVVERGT  189 (379)
T ss_dssp             TTEEEEEEEEESCGGGGGGGEEEEEEETTC
T ss_pred             CcCCEEEEEEEcCCCCCCCceEEEEEeCCC
Confidence            999999999998532   468999999874

>1buc_A Butyryl-COA dehydrogenase; acyl-COA dehydrogenase short-chain acyl-COA dehydrogenase, flavoprotein, oxidoreductase; HET: CAA FAD; 2.50A {Megasphaera elsdenii} SCOP: a.29.3.1 e.6.1.1

Probab=100.00  E-value=9.9e-39  Score=280.42  Aligned_cols=186  Identities=30%  Similarity=0.402  Sum_probs=173.5

Q ss_pred             CCCCCCHHHHHHHHHHHHHHHhhccccHHHHHHhCCCCHHHHHHHHhcCcCCC-ccccCCCCC---CCHHHHHHHHHHHH
Q 026317           51 FDDLLTSEEQAVRMKVRECMEKEIAPIMAEYWEKAEFPFHVIPKLGALRVAGG-TIKGYGCPG---HSVTGAAIAIAEIA  126 (240)
Q Consensus        51 m~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~l~~~Gl~~l-~p~~~GG~g---~~~~~~~~v~e~la  126 (240)
                      |++.++++++++++.+++|+++.+.|.+.+.|+.+.+|.++|++|++.||+++ +|++|||.|   +++.+++.++|+++
T Consensus         1 M~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~l~~~Gl~~~~~P~~~GG~g~~~~~~~~~~~v~eel~   80 (383)
T 1buc_A            1 MDFNLTDIQQDFLKLAHDFGEKKLAPTVTERDHKGIYDKELIDELLSLGITGAYFEEKYGGSGDDGGDVLSYILAVEELA   80 (383)
T ss_dssp             CBCCCCHHHHHHHHHHHHHHHHTTTTTHHHHHHHTCCCHHHHHHHHTTSGGGTTSCGGGTCGGGGTCCHHHHHHHHHHHH
T ss_pred             CCCCCCHHHHHHHHHHHHHHHHhCchhHHHHhhcCCCCHHHHHHHHHCCCCCCCCChhhCCCCCCCCCHHHHHHHHHHHH
Confidence            67889999999999999999999999988888999999999999999999999 999999999   99999999999999


Q ss_pred             ccCCcchHHHHhhhhHHHHHHhccCCHHHHHhhchhhhcCCceEEEEeeCCCCCCCcCCCceEEEEe-CCEEEEeeeEee
Q 026317          127 RVDASCSTFILVHSSLAMLTIALCGSEEQKQKYLPSLAQLNTIACWALTEPAYGSDASALNTTATKV-EGGWILEGQKRW  205 (240)
Q Consensus       127 ~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~l~~l~~G~~~~~~a~tEp~~Gsd~~~~~t~a~~~-~~g~~LnG~K~~  205 (240)
                      ++|+++++.+.+|..++...|..+|+++||++|||++++|+.++|+++|||++|||+..++|+|+++ +|||+|||+|.|
T Consensus        81 ~~~~~~~~~~~~~~~~~~~~l~~~g~~~q~~~~l~~~~~g~~~~~~a~tEp~~Gsd~~~~~t~A~~~~~~g~~lnG~K~~  160 (383)
T 1buc_A           81 KYDAGVAITLSATVSLCANPIWQFGTEAQKEKFLVPLVEGTKLGAFGLTEPNAGTDASGQQTIATKNDDGTYTLNGSKIF  160 (383)
T ss_dssp             HHCHHHHHHHHHHHHHTHHHHHHHCCHHHHHHTHHHHHHTSSCEEEECCBTTBSSCGGGCCCEEEECTTSCEEEEEEEEE
T ss_pred             hhChHHHHHHHhhhhHHHHHHHHhCCHHHHHHHHHHHhCCCeeEEEEeCCCCCCCChhhCEeEEEEcCCCEEEEEEEEec
Confidence            9999988877777556778889999999999999999999999999999999999999999999999 999999999999


Q ss_pred             ecCCCCCCEEEEEEEeCCC---CCeeEEEEeCCc
Q 026317          206 IGNSTFADVLVIFARNTTT---NQINGYANQSIK  236 (240)
Q Consensus       206 vs~~~~Ad~~~v~a~~~~~---~~~~~flVp~~~  236 (240)
                      |||+..||+++|+|+++++   .++++|+||++.
T Consensus       161 ~s~~~~Ad~~~v~a~~~~~~~~~g~~~flV~~~~  194 (383)
T 1buc_A          161 ITNGGAADIYIVFAMTDKSKGNHGITAFILEDGT  194 (383)
T ss_dssp             EETTTTCSEEEEEEESCSSSSTTSEEEEEEETTC
T ss_pred             cCCCCcCCEEEEEEEeCCCCCCCceEEEEEECCC
Confidence            9999999999999998633   369999999873

>1rx0_A Acyl-COA dehydrogenase family member 8, mitochondrial; flavoprotein, coenzyme A, oxidoreductase; HET: FAD 2MC; 1.77A {Homo sapiens} SCOP: a.29.3.1 e.6.1.1

Probab=100.00  E-value=3.4e-38  Score=277.98  Aligned_cols=186  Identities=28%  Similarity=0.406  Sum_probs=172.1

Q ss_pred             cCCCCCCHHHHHHHHHHHHHHHhhccccHHHHHHhCCCCHHHHHHHHhcCcCCC-ccccCCCCCCCHHHHHHHHHHHHcc
Q 026317           50 QFDDLLTSEEQAVRMKVRECMEKEIAPIMAEYWEKAEFPFHVIPKLGALRVAGG-TIKGYGCPGHSVTGAAIAIAEIARV  128 (240)
Q Consensus        50 ~m~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~l~~~Gl~~l-~p~~~GG~g~~~~~~~~v~e~la~~  128 (240)
                      .|++.++++++++++.+|+|+++.+.|.+.+.|+.+.+|.++|++|++.||+++ +|++|||.|+++.+++.++|+++++
T Consensus        14 ~~~~~~~~e~~~~~~~~r~~~~~~~~~~~~~~d~~~~~p~~~~~~l~~~Gl~~l~~P~e~GG~g~~~~~~~~v~eela~~   93 (393)
T 1rx0_A           14 DPSMGLNEEQKEFQKVAFDFAAREMAPNMAEWDQKELFPVDVMRKAAQLGFGGVYIQTDVGGSGLSRLDTSVIFEALATG   93 (393)
T ss_dssp             CTTTTCCHHHHHHHHHHHHHHHHHTHHHHHHHHHHTCCCHHHHHHHHHTTCSSTTSCGGGTCCCCCHHHHHHHHHHHHTT
T ss_pred             cCCCCCCHHHHHHHHHHHHHHHHhCCccHHHHhhcCCCCHHHHHHHHhCCCCcCCCChhhCCCCCCHHHHHHHHHHHHHh
Confidence            456678999999999999999999999888888889999999999999999999 9999999999999999999999999


Q ss_pred             CCcchHHHHhhhhHHHHHHhccCCHHHHHhhchhhhcCCceEEEEeeCCCCCCCcCCCceEEEEeCCEEEEeeeEeeecC
Q 026317          129 DASCSTFILVHSSLAMLTIALCGSEEQKQKYLPSLAQLNTIACWALTEPAYGSDASALNTTATKVEGGWILEGQKRWIGN  208 (240)
Q Consensus       129 ~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~l~~l~~G~~~~~~a~tEp~~Gsd~~~~~t~a~~~~~g~~LnG~K~~vs~  208 (240)
                      |+++++.+.+|. ++...|..+|+++||++|+|++++|+.++|+++|||++|||+..++|+|++++|||+|||+|.||||
T Consensus        94 ~~~~~~~~~~~~-~~~~~l~~~g~~~qk~~~l~~~~~G~~~~~~a~tEp~~gsd~~~~~t~A~~~~~g~~lnG~K~~is~  172 (393)
T 1rx0_A           94 CTSTTAYISIHN-MCAWMIDSFGNEEQRHKFCPPLCTMEKFASYCLTEPGSGSDAASLLTSAKKQGDHYILNGSKAFISG  172 (393)
T ss_dssp             CHHHHHHHHHHH-HHHHHHHHHSCHHHHHHHHHHHHTTSSCEEEECCBTTBSSSGGGCCCEEEEETTEEEEEEEEEEEET
T ss_pred             CcchhHHHHHhH-HHHHHHHHHCCHHHHHHHHHHHhCCCceEEEEecCCCCCcCcccceeEEEEcCCEEEEEeEEEeecC
Confidence            998887777664 5667888999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCCCCEEEEEEEeCCC--CCeeEEEEeCCc
Q 026317          209 STFADVLVIFARNTTT--NQINGYANQSIK  236 (240)
Q Consensus       209 ~~~Ad~~~v~a~~~~~--~~~~~flVp~~~  236 (240)
                      +..||+++|+|+++++  .++++|+||++.
T Consensus       173 a~~Ad~~~v~a~~~~~~~~g~~~flV~~~~  202 (393)
T 1rx0_A          173 AGESDIYVVMCRTGGPGPKGISCIVVEKGT  202 (393)
T ss_dssp             TTTCSEEEEEEESSSSSGGGEEEEEEETTC
T ss_pred             CccCCEEEEEEEcCCCCCCceEEEEEeCCC
Confidence            9999999999998532  368999999864

>1egd_A Medium chain acyl-COA dehydrogenase; flavoprotein, electron transfer; HET: FAD; 2.40A {Homo sapiens} SCOP: a.29.3.1 e.6.1.1 PDB: 1egc_A* 1ege_A* 1t9g_A* 2a1t_A* 1udy_A* 3mdd_A* 3mde_A*

Probab=100.00  E-value=1.3e-38  Score=280.86  Aligned_cols=189  Identities=26%  Similarity=0.412  Sum_probs=174.3

Q ss_pred             cCCCCCCHHHHHHHHHHHHHHHhhccccHHHHHHhCCCCHHHHHHHHhcCcCCC-ccccCCCCCCCHHHHHHHHHHHHcc
Q 026317           50 QFDDLLTSEEQAVRMKVRECMEKEIAPIMAEYWEKAEFPFHVIPKLGALRVAGG-TIKGYGCPGHSVTGAAIAIAEIARV  128 (240)
Q Consensus        50 ~m~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~l~~~Gl~~l-~p~~~GG~g~~~~~~~~v~e~la~~  128 (240)
                      .|++.+++++.++++.+++|+++.+.|.+.+.|+.+.+|.++|++|++.||+++ +|++|||.|+++.+++.++|+++++
T Consensus        11 ~m~~~~~~~~~~l~~~~r~~~~~~~~~~~~~~d~~~~~~~~~~~~l~~~Gl~~~~~P~~~GG~g~~~~~~~~v~eel~~~   90 (396)
T 1egd_A           11 GFSFEFTEQQKEFQATARKFAREEIIPVAAEYDKTGEYPVPLIRRAWELGLMNTHIPENCGGLGLGTFDACLISEELAYG   90 (396)
T ss_dssp             EEECCCCHHHHHHHHHHHHHHHHHTHHHHHHHHHHCCCCHHHHHHHHHHTCSSTTSCGGGTSCCCCHHHHHHHHHHHHHH
T ss_pred             cCCCCCCHHHHHHHHHHHHHHHHhCchhHHHHHhhCCCCHHHHHHHHHCCCCCCCCchhhCCCCCCHHHHHHHHHHHHhh
Confidence            588889999999999999999999998888888899999999999999999999 9999999999999999999999999


Q ss_pred             CCcchHHHHhhhhHHHHHHhccCCHHHHHhhchhhhcCCceEEEEeeCCCCCCCcCCCceEEEEeCCEEEEeeeEeeecC
Q 026317          129 DASCSTFILVHSSLAMLTIALCGSEEQKQKYLPSLAQLNTIACWALTEPAYGSDASALNTTATKVEGGWILEGQKRWIGN  208 (240)
Q Consensus       129 ~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~l~~l~~G~~~~~~a~tEp~~Gsd~~~~~t~a~~~~~g~~LnG~K~~vs~  208 (240)
                      |+++++.+ +|..++...|..+|+++||++|||++++|+.++|+++|||++|||+..++|+|++++|||+|||+|.||||
T Consensus        91 ~~~~~~~~-~~~~~~~~~l~~~g~~~q~~~~l~~~~~g~~~~~~a~tEp~~Gsd~~~~~t~A~~~~~g~~lnG~K~~~s~  169 (396)
T 1egd_A           91 CTGVQTAI-EGNSLGQMPIIIAGNDQQKKKYLGRMTEEPLMCAYCVTEPGAGSDVAGIKTKAEKKGDEYIINGQKMWITN  169 (396)
T ss_dssp             CHHHHHHH-HHHHHHTHHHHHHCCHHHHHHHHHHHHHSCCCEEEECCBTTBSSSGGGCCCEEEECSSEEEEEEEEEEEET
T ss_pred             CccHHHHH-HhhhHHHHHHHHhCCHHHHHHHHHHHhCCCceEEEEecCCCCCcchhhCeeEEEEeCCEEEEEEEEEcccC
Confidence            99988766 56556666788999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCCCCEEEEEEEeCCC------CCeeEEEEeCC--ceec
Q 026317          209 STFADVLVIFARNTTT------NQINGYANQSI--KFVL  239 (240)
Q Consensus       209 ~~~Ad~~~v~a~~~~~------~~~~~flVp~~--~~~~  239 (240)
                      +..||+++|+|+++++      .++++|+||++  .++|
T Consensus       170 ~~~Ad~~~v~a~~~~~~~~~~~~g~~~flV~~~~pGv~v  208 (396)
T 1egd_A          170 GGKANWYFLLARSDPDPKAPANKAFTGFIVEADTPGIQI  208 (396)
T ss_dssp             TTTCSEEEEEEECCCCTTSCGGGTEEEEEEETTCTTEEE
T ss_pred             CcccCEEEEEEEeCCCCCCCCCCCeEEEEEeCCCCCeee
Confidence            9999999999998643      46899999987  5554

>2jif_A Short/branched chain specific acyl-COA dehydrogen; mitochondrion, oxidoreductase, transit peptide, fatty acid metabolism, FAD, flavoprotein; HET: FAD COS; 2.0A {Homo sapiens}

Probab=100.00  E-value=2.9e-38  Score=279.39  Aligned_cols=187  Identities=29%  Similarity=0.420  Sum_probs=172.0

Q ss_pred             ccCCCCCCHHHHHHHHHHHHHHHhhccccHHHHHHhCCCCHHHHHHHHhcCcCCC-ccccCCCCCCCHHHHHHHHHHHHc
Q 026317           49 YQFDDLLTSEEQAVRMKVRECMEKEIAPIMAEYWEKAEFPFHVIPKLGALRVAGG-TIKGYGCPGHSVTGAAIAIAEIAR  127 (240)
Q Consensus        49 ~~m~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~l~~~Gl~~l-~p~~~GG~g~~~~~~~~v~e~la~  127 (240)
                      +.|++.++++++++++.+|+|+++.+.|...+.|+.+.+|.++|++|++.||+++ +|++|||.|+++.+++.++|++++
T Consensus        23 ~~~~~~~~~e~~~l~~~~r~~~~~~~~p~~~~~d~~~~~~~~~~~~l~e~Gl~~l~~P~e~GG~g~~~~~~~~v~eel~~  102 (404)
T 2jif_A           23 MAPLQTFTDEEMMIKSSVKKFAQEQIAPLVSTMDENSKMEKSVIQGLFQQGLMGIEVDPEYGGTGASFLSTVLVIEELAK  102 (404)
T ss_dssp             -CCTTCCCHHHHHHHHHHHHHHHHHTGGGHHHHHHHTCCCHHHHHHHHHTTTTSSSSCGGGTCCCCCHHHHHHHHHHHHT
T ss_pred             ccccCCCCHHHHHHHHHHHHHHHHhCcccHHHHhhcCCCCHHHHHHHHHCCCCccCCchhhCCCCCCHHHHHHHHHHHHh
Confidence            4466779999999999999999999999888888889999999999999999999 999999999999999999999999


Q ss_pred             cCCcchHHHHhhhhHHHHHHhccCCHHHHHhhchhhhcCCceEEEEeeCCCCCCCcCCCceEEEEeCCEEEEeeeEeeec
Q 026317          128 VDASCSTFILVHSSLAMLTIALCGSEEQKQKYLPSLAQLNTIACWALTEPAYGSDASALNTTATKVEGGWILEGQKRWIG  207 (240)
Q Consensus       128 ~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~l~~l~~G~~~~~~a~tEp~~Gsd~~~~~t~a~~~~~g~~LnG~K~~vs  207 (240)
                      +|+++++.+.+|..++..+|..+|+++||++|||++++|. ++|+++|||++|||+..++|+|++++|||+|||+|.|||
T Consensus       103 ~~~~~~~~~~~~~~~~~~~l~~~g~~~qk~~~l~~~~~g~-~~~~a~tEp~~Gsd~~~~~t~A~~~g~g~vlnG~K~~is  181 (404)
T 2jif_A          103 VDASVAVFCEIQNTLINTLIRKHGTEEQKATYLPQLTTEK-VGSFCLSEAGAGSDSFALKTRADKEGDYYVLNGSKMWIS  181 (404)
T ss_dssp             TCHHHHHHHHHHHHTHHHHHHHHCCHHHHHHHHHHHHHTC-CEEEECCBTTBSSSGGGCCCEEEEETTEEEEEEEEEEEE
T ss_pred             cCcHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHhCCC-cceEEecCCCCCCChhhceeEEEEeCCEEEEEeEEEeec
Confidence            9999888777776566778889999999999999999986 789999999999999999999999999999999999999


Q ss_pred             CCCCCCEEEEEEEeCCC---CCeeEEEEeCCc
Q 026317          208 NSTFADVLVIFARNTTT---NQINGYANQSIK  236 (240)
Q Consensus       208 ~~~~Ad~~~v~a~~~~~---~~~~~flVp~~~  236 (240)
                      |+..||+++|+|+++++   .++++|+||++.
T Consensus       182 ~a~~Ad~~~v~ar~~~~~~~~g~~~flV~~~~  213 (404)
T 2jif_A          182 SAEHAGLFLVMANVDPTIGYKGITSFLVDRDT  213 (404)
T ss_dssp             TTTTCSEEEEEEESCGGGGGGGEEEEEEETTC
T ss_pred             CCcccCEEEEEEEeCCCCCCCceEEEEEecCC
Confidence            99999999999998532   368999999875

>3r7k_A Probable acyl COA dehydrogenase; ssgcid, structural genomics, seattle structural genomics CEN infectious disease, oxidoreductase; HET: FDA; 2.50A {Mycobacterium abscessus}

Probab=100.00  E-value=1.5e-38  Score=281.11  Aligned_cols=190  Identities=22%  Similarity=0.289  Sum_probs=174.4

Q ss_pred             cCCCCCCHHHHHHHHHHHHHHHhhccccHHHHHHhCCCCHHHHHHHHhcCcCCC-ccccCCCCCCCHHHHHHHHHHHHcc
Q 026317           50 QFDDLLTSEEQAVRMKVRECMEKEIAPIMAEYWEKAEFPFHVIPKLGALRVAGG-TIKGYGCPGHSVTGAAIAIAEIARV  128 (240)
Q Consensus        50 ~m~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~l~~~Gl~~l-~p~~~GG~g~~~~~~~~v~e~la~~  128 (240)
                      .+++.++++++++++.+|+|+++.+.|.+.+.|+.+.+|.++|++|++.||+++ +|++|||.|+++.+++.++|+++++
T Consensus        24 ~~~~~~~~e~~~l~~~~r~~~~~~~~~~~~~~d~~~~~~~~~~~~l~~~Gl~~l~~P~e~GG~g~~~~~~~~v~eela~~  103 (403)
T 3r7k_A           24 APEAWTTPERRALSQMARSFVEREIAPKLAEWEHVGEIPRDLHLNAAEVGLLGIGFPEEVGGSGGNAIDSALVTEAILAA  103 (403)
T ss_dssp             -CGGGGCHHHHHHHHHHHHHHHHHTTTTHHHHHHHTSCCTHHHHHHHHHTCTTBTSCGGGTCCBCCHHHHHHHHHHHHHT
T ss_pred             CCCCCCCHHHHHHHHHHHHHHHHhCChhHHHHHhcCCCCHHHHHHHHhCCCCcCCCChhhCCCCCCHHHHHHHHHHHHhc
Confidence            355668999999999999999999999998899999999999999999999999 9999999999999999999999998


Q ss_pred             -CCcchHHHHhhhhHHHHHHhccCCHHHHHhhchhhhcCCceEEEEeeCCCCCCCcCCCceEEEEeCCEEEEeeeEeeec
Q 026317          129 -DASCSTFILVHSSLAMLTIALCGSEEQKQKYLPSLAQLNTIACWALTEPAYGSDASALNTTATKVEGGWILEGQKRWIG  207 (240)
Q Consensus       129 -~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~l~~l~~G~~~~~~a~tEp~~Gsd~~~~~t~a~~~~~g~~LnG~K~~vs  207 (240)
                       |+++++.+.+++.++...|..+|+++||++|||++++|+.++|+++|||++|||+..++|+|++++|||+|||+|.|||
T Consensus       104 ~~~~~~~~~~~~~~~~~~~l~~~g~~~q~~~~l~~~~~G~~~~~~a~tEp~~Gsd~~~~~t~A~~~~~g~~lnG~K~~vs  183 (403)
T 3r7k_A          104 GGSTGVCAALFTHGIALPHIAANGSDALIERYVRPTLAGKMIGSLGVTEPGAGSDVANLRTRAVREGDTYVVNGAKTFIT  183 (403)
T ss_dssp             TCCHHHHHHHCTHHHHSHHHHHHCCHHHHHHHHHHHHTTSCCEEEECCBTTBSSCGGGCCCEEEECSSEEEEEEEEEEEE
T ss_pred             CCchHHHHHHHHhhHHHHHHHHhCCHHHHHHHHHHHhCCCeeEEEEecCCCCCCChhhceEEEEEECCEEEEEEEEEccc
Confidence             8887766665555677789999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCCCCCEEEEEEEeCCC--CCeeEEEEeCCc--eec
Q 026317          208 NSTFADVLVIFARNTTT--NQINGYANQSIK--FVL  239 (240)
Q Consensus       208 ~~~~Ad~~~v~a~~~~~--~~~~~flVp~~~--~~~  239 (240)
                      |+..||+++|.|+++++  +++++|+||+++  ++|
T Consensus       184 ~a~~Ad~~~v~a~~~~~~~~g~~~flV~~~~pGv~v  219 (403)
T 3r7k_A          184 SGVRADFVTTAVRTGGPGYGGVSLLVIDKNSPGFEV  219 (403)
T ss_dssp             TTTTCSEEEEEEECSSSSGGGEEEEEEETTCTTEEE
T ss_pred             CCccCCEEEEEEEcCCCCCCceEEEEEeCCCCCeEe
Confidence            99999999999998642  468999999987  654

>2dvl_A Acyl-COA dehydrogenase; structural genomics, NPPSFA, national project on protein STR and functional analyses; HET: FAD; 2.50A {Thermus thermophilus}

Probab=100.00  E-value=2.5e-38  Score=276.92  Aligned_cols=184  Identities=33%  Similarity=0.507  Sum_probs=171.0

Q ss_pred             CCCHHHHHHHHHHHHHHHhhccccHHHHHHhCCCCHHHHHHHHhcCcCCC-ccccCCCCCCCHHHHHHHHHHHHccCCcc
Q 026317           54 LLTSEEQAVRMKVRECMEKEIAPIMAEYWEKAEFPFHVIPKLGALRVAGG-TIKGYGCPGHSVTGAAIAIAEIARVDASC  132 (240)
Q Consensus        54 ~l~~~~~~l~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~l~~~Gl~~l-~p~~~GG~g~~~~~~~~v~e~la~~~~~~  132 (240)
                      .++++++++++.+++|+.+.+.|.+.+.|+.+.+|.++|++|.+.||+++ +|++|||.|+++.+++.++|+++++|+++
T Consensus         2 ~~~~e~~~l~~~~r~~~~~~~~~~~~~~d~~~~~~~~~~~~l~~~Gl~~~~~P~~~GG~g~~~~~~~~v~eel~~~~~~~   81 (372)
T 2dvl_A            2 TLTQEQRLVLDAVRRVAREVLYPLAPEYDRKAEYPWPQLKALAELGLLGMTTPEEWGGVGLDSVTWALALEELAAADPSV   81 (372)
T ss_dssp             -CCHHHHHHHHHHHHHHHHTHHHHHHHHHHTTCCCHHHHHHHHHTTGGGTTSCGGGTSCCCCHHHHHHHHHHHHHHCHHH
T ss_pred             CCCHHHHHHHHHHHHHHHHhCchhHHHHHhhCCCCHHHHHHHHhCCCCCCCCChhhCCCCCCHHHHHHHHHHHHhcCcHH
Confidence            47899999999999999998988888888889999999999999999999 99999999999999999999999999998


Q ss_pred             hHHHHhhhhHHHHHHhccCCHHHHHhhchhhhcCCceEEEEeeCCCCCCCcCCCceEEEEeCCEEEEeeeEeeecCCCCC
Q 026317          133 STFILVHSSLAMLTIALCGSEEQKQKYLPSLAQLNTIACWALTEPAYGSDASALNTTATKVEGGWILEGQKRWIGNSTFA  212 (240)
Q Consensus       133 ~~~~~~~~~~~~~~l~~~g~~~~~~~~l~~l~~G~~~~~~a~tEp~~Gsd~~~~~t~a~~~~~g~~LnG~K~~vs~~~~A  212 (240)
                      ++.+.+|..++...|..+|+++||++|||++++|+.++|+++|||++|||+..++|+|++++|||+|||+|.||||+..|
T Consensus        82 ~~~~~~~~~~~~~~l~~~g~~~q~~~~l~~~~~g~~~~~~a~tEp~~Gsd~~~~~t~A~~~~~g~~lnG~K~~~s~~~~A  161 (372)
T 2dvl_A           82 AVIVSVTSGLPQYMLLRFGSEAQKRRYLVPLARGEWIGAFCLTEPQAGSDAKSLRAEARRVKGGFVLNGVKSWITSAGHA  161 (372)
T ss_dssp             HHHHHHHTSHHHHHHHHHCCHHHHHHTHHHHHTTSSCEEEECCCSSCSSCGGGCCCEEEEETTEEEEEEEEEEEETTTTC
T ss_pred             HHHHHHhhhHHHHHHHHhCCHHHHHHHHHHHhCCCeEEEEEecCCCCCCChhhCeeEEEEECCEEEEEeEEEeecCCCcC
Confidence            88777775467778889999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CEEEEEEEeCCCCCeeEEEEeCCc--eec
Q 026317          213 DVLVIFARNTTTNQINGYANQSIK--FVL  239 (240)
Q Consensus       213 d~~~v~a~~~~~~~~~~flVp~~~--~~~  239 (240)
                      |+++|+|++++  ++++|+||++.  ++|
T Consensus       162 d~~~v~a~~~~--g~~~flV~~~~pGv~v  188 (372)
T 2dvl_A          162 HLYVVMARTEK--GISAFLVEKGTPGLSF  188 (372)
T ss_dssp             SEEEEEEEETT--EEEEEEEETTCTTEEE
T ss_pred             CEEEEEEEeCC--CcEEEEEeCCCCCeEe
Confidence            99999999864  79999999876  554

>2pg0_A Acyl-COA dehydrogenase; GK1316, geobacillus kaustophilus HTA structural genomics, PSI, protein structure initiative; HET: FAD; 1.80A {Geobacillus kaustophilus}

Probab=100.00  E-value=6.4e-38  Score=275.47  Aligned_cols=187  Identities=27%  Similarity=0.352  Sum_probs=170.5

Q ss_pred             CC-CCCCHHHHHHHHHHHHHHHhhccccHHHHHHhCCCCHHHHHHHHhcCcCCC-ccccCCCCCCCHHHHHHHHHHHHcc
Q 026317           51 FD-DLLTSEEQAVRMKVRECMEKEIAPIMAEYWEKAEFPFHVIPKLGALRVAGG-TIKGYGCPGHSVTGAAIAIAEIARV  128 (240)
Q Consensus        51 m~-~~l~~~~~~l~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~l~~~Gl~~l-~p~~~GG~g~~~~~~~~v~e~la~~  128 (240)
                      |+ +.++++++++++.+++|+.+.+.|.+.+.|+.+.+|.++|++|.+.||+++ +|++|||.|+++.+++.++|+++++
T Consensus         5 m~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~l~~~Gl~~~~~P~~~GG~g~~~~~~~~v~eela~~   84 (385)
T 2pg0_A            5 MTARYLREEHHMFRAAFRKFLEKEAYPHYNDWEKRGIIPRSFWAKMGENGFLCPWVDEKYGGLNADFAYSVVINEELEKV   84 (385)
T ss_dssp             -CCTTCCHHHHHHHHHHHHHHHHHTTTTHHHHHHHTSCCHHHHHHHHHTTCSSTTSCGGGTCCCCCHHHHHHHHHHHHHH
T ss_pred             cCCCCCCHHHHHHHHHHHHHHHHhCchhHHHHHhcCCCCHHHHHHHHHCCCCCcCCChhhCCCCCCHHHHHHHHHHHHhh
Confidence            55 678999999999999999999999988888899999999999999999999 9999999999999999999999999


Q ss_pred             C-CcchHHHHhhhhHHHHHHhccCCHHHHHhhchhhhcCCceEEEEeeCCCCCCCcCCCceEEEEeCCEEEEeeeEeeec
Q 026317          129 D-ASCSTFILVHSSLAMLTIALCGSEEQKQKYLPSLAQLNTIACWALTEPAYGSDASALNTTATKVEGGWILEGQKRWIG  207 (240)
Q Consensus       129 ~-~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~l~~l~~G~~~~~~a~tEp~~Gsd~~~~~t~a~~~~~g~~LnG~K~~vs  207 (240)
                      | +++++.+  |..++...|..+|+++||++|+|++++|+.++|+++|||++|||+..++|+|++++|||+|||+|.|||
T Consensus        85 ~~~~~~~~~--~~~~~~~~l~~~g~~~q~~~~l~~~~~g~~~~~~a~tEp~~Gsd~~~~~t~A~~~~~g~~lnG~K~~~s  162 (385)
T 2pg0_A           85 GSSLVGIGL--HNDIVTPYIASYGTEEQKQKWLPKCVTGELITAIAMTEPGAGSDLANISTTAVKDGDYYIVNGQKTFIT  162 (385)
T ss_dssp             CGGGHHHHH--HHHTTHHHHHHHCCHHHHHHHHHHHHHTSSCEEEECCBTTBSSCGGGCCCEEEEETTEEEEEEEEEEET
T ss_pred             CCchHHHHH--HhhHHHHHHHHhCCHHHHHHHHHHHhCCCeEEEEEeCCCCCCcCHhhCeEEEEEcCCEEEEEeEEeccc
Confidence            9 7877654  544567788899999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCCCCCEEEEEEEeCCC-----CCeeEEEEeCC--ceec
Q 026317          208 NSTFADVLVIFARNTTT-----NQINGYANQSI--KFVL  239 (240)
Q Consensus       208 ~~~~Ad~~~v~a~~~~~-----~~~~~flVp~~--~~~~  239 (240)
                      |+.+||+++|.|+++++     .++++|+||++  .++|
T Consensus       163 ~~~~Ad~~~v~a~~~~~~~~~~~g~~~flV~~~~pGv~v  201 (385)
T 2pg0_A          163 NGIHADLIVVACKTDPQAKPPHRGISLLVVERDTPGFTR  201 (385)
T ss_dssp             TTTTCSEEEEEEESCTTCSSGGGGEEEEEEETTCTTEEE
T ss_pred             CCcccCEEEEEEEeCCccCCCCCceEEEEEeCCCCCeEe
Confidence            99999999999998633     26899999987  4544

>1ivh_A Isovaleryl-COA dehydrogenase; oxidoreductase, acyl-COA dehydrogenase, flavoprotein, isovaleric acidemia; HET: FAD COS; 2.60A {Homo sapiens} SCOP: a.29.3.1 e.6.1.1

Probab=100.00  E-value=4.7e-38  Score=277.17  Aligned_cols=184  Identities=29%  Similarity=0.429  Sum_probs=171.7

Q ss_pred             CCCCHHHHHHHHHHHHHHHhhccccHHHHHHhCCCCH--HHHHHHHhcCcCCC-ccccCCCCCCCHHHHHHHHHHHHccC
Q 026317           53 DLLTSEEQAVRMKVRECMEKEIAPIMAEYWEKAEFPF--HVIPKLGALRVAGG-TIKGYGCPGHSVTGAAIAIAEIARVD  129 (240)
Q Consensus        53 ~~l~~~~~~l~~~~~~~~~~~~~~~~~~~d~~~~~~~--~~~~~l~~~Gl~~l-~p~~~GG~g~~~~~~~~v~e~la~~~  129 (240)
                      +.++++++++++.+++|+++.+.|.+.+.|+.+.+|.  ++|++|++.||+++ +|++|||.|+++.+.+.++|+++++|
T Consensus        11 ~~~~~e~~~l~~~~r~~~~~~~~~~~~~~d~~~~~~~~~~~~~~l~~~Gl~~l~~P~e~GG~g~~~~~~~~v~eel~~~~   90 (394)
T 1ivh_A           11 NGLSEEQRQLRQTMAKFLQEHLAPKAQEIDRSNEFKNLREFWKQLGNLGVLGITAPVQYGGSGLGYLEHVLVMEEISRAS   90 (394)
T ss_dssp             GTCCHHHHHHHHHHHHHHHHHTTTTHHHHHHHTCCTTHHHHHHHHHHHTCTTTTSCGGGTCCCCCHHHHHHHHHHHHHHC
T ss_pred             cCCCHHHHHHHHHHHHHHHHhCChhHHHHHhcCCCCchHHHHHHHHHCCCCCCCCCcccCCCCCCHHHHHHHHHHHHhhc
Confidence            5689999999999999999999998888888999999  99999999999999 99999999999999999999999999


Q ss_pred             CcchHHHHhhhhHHHHHHhccCCHHHHHhhchhhhcCCceEEEEeeCCCCCCCcCCCceEEEEeCCEEEEeeeEeeecCC
Q 026317          130 ASCSTFILVHSSLAMLTIALCGSEEQKQKYLPSLAQLNTIACWALTEPAYGSDASALNTTATKVEGGWILEGQKRWIGNS  209 (240)
Q Consensus       130 ~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~l~~l~~G~~~~~~a~tEp~~Gsd~~~~~t~a~~~~~g~~LnG~K~~vs~~  209 (240)
                      +++++.+.+|..++...|..+|+++||++|||++++|+.++|+++|||++|||+..++|+|++++|||+|||+|.||||+
T Consensus        91 ~~~~~~~~~~~~~~~~~l~~~g~~~q~~~~l~~l~~G~~~~~~a~tEp~~gsd~~~~~t~A~~~~~g~~lnG~K~~vs~~  170 (394)
T 1ivh_A           91 GAVGLSYGAHSNLCINQLVRNGNEAQKEKYLPKLISGEYIGALAMSEPNAGSDVVSMKLKAEKKGNHYILNGNKFWITNG  170 (394)
T ss_dssp             HHHHHHHHHHHTTTHHHHHHHCCHHHHHHHHHHHHHTSSCEEEECCBTTBSSSGGGCCCEEEECSSEEEEEEEEEEEETG
T ss_pred             hhHHHHHHHhhHHHHHHHHHhCCHHHHHHHHHHHhCCCeEEEEEecCCCCCcCcccceEEEEEcCCEEEEEeEEEeeCCC
Confidence            99888877775467778899999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCCCEEEEEEEeCCC-----CCeeEEEEeCCc
Q 026317          210 TFADVLVIFARNTTT-----NQINGYANQSIK  236 (240)
Q Consensus       210 ~~Ad~~~v~a~~~~~-----~~~~~flVp~~~  236 (240)
                      ..||+++|+|+++++     .++++|+||++.
T Consensus       171 ~~Ad~~~v~ar~~~~~~~~~~g~~~flV~~~~  202 (394)
T 1ivh_A          171 PDADVLIVYAKTDLAAVPASRGITAFIVEKGM  202 (394)
T ss_dssp             GGCSEEEEEEESCTTCSSGGGGEEEEEEETTC
T ss_pred             CcCCEEEEEEEeCCcccCCCCCeEEEEEeCCC
Confidence            999999999998643     368999999875

>1siq_A GCD, glutaryl-COA dehydrogenase; acyl-COA dehydrogenase, decarboxylation, flavin protein, oxidoreductase; HET: FAD; 2.10A {Homo sapiens} SCOP: a.29.3.1 e.6.1.1 PDB: 2r0n_A* 1sir_A* 2r0m_A*

Probab=100.00  E-value=1.2e-37  Score=274.30  Aligned_cols=191  Identities=35%  Similarity=0.550  Sum_probs=174.5

Q ss_pred             CcccCCCCCCHHHHHHHHHHHHHHHhhccccHHHHHHhCCCCHHHHHHHHhcCcCCC-ccccCCCCCCCHHHHHHHHHHH
Q 026317           47 DYYQFDDLLTSEEQAVRMKVRECMEKEIAPIMAEYWEKAEFPFHVIPKLGALRVAGG-TIKGYGCPGHSVTGAAIAIAEI  125 (240)
Q Consensus        47 ~~~~m~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~l~~~Gl~~l-~p~~~GG~g~~~~~~~~v~e~l  125 (240)
                      +.+.|++.++++++++++.+++|+++.+.|...+.++.+.+|.++|++|++.||+++ + ++|||.|+++.+++.++|++
T Consensus         6 ~~~~m~~~~~~e~~~l~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gl~~l~~-~~~GG~g~~~~~~~~~~eel   84 (392)
T 1siq_A            6 DPLVLEEQLTTDEILIRDTFRTYCQERLMPRILLANRNEVFHREIISEMGELGVLGPTI-KGYGCAGVSSVAYGLLAREL   84 (392)
T ss_dssp             STTCGGGGSCHHHHHHHHHHHHHHHHHTHHHHHHHHHHTCCCTHHHHHHHHTTCSSTTC-EETTEECCCHHHHHHHHHHH
T ss_pred             cccccCCCCCHHHHHHHHHHHHHHHHhcCcchHHHHhhCCCCHHHHHHHHhCCCCcccH-HhhCCCCCCHHHHHHHHHHH
Confidence            556688899999999999999999999988888888888999999999999999999 9 99999999999999999999


Q ss_pred             HccCCcchHHHHhhhhHHHHHHhccCCHHHHHhhchhhhcCCceEEEEeeCCCCCCCcCCCceEEEEe--CCEEEEeeeE
Q 026317          126 ARVDASCSTFILVHSSLAMLTIALCGSEEQKQKYLPSLAQLNTIACWALTEPAYGSDASALNTTATKV--EGGWILEGQK  203 (240)
Q Consensus       126 a~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~l~~l~~G~~~~~~a~tEp~~Gsd~~~~~t~a~~~--~~g~~LnG~K  203 (240)
                      +++|+++++.+.+|..++...+..+|+++||++|+|++++|+.++|+++|||++|||+..++|+|+++  +|||+|||+|
T Consensus        85 ~~~~~~~~~~~~~~~~~~~~~l~~~g~~~q~~~~l~~l~~g~~~~~~a~tEp~~gsd~~~~~t~A~~~~~~~g~~lnG~K  164 (392)
T 1siq_A           85 ERVDSGYRSAMSVQSSLVMHPIYAYGSEEQRQKYLPQLAKGELLGCFGLTEPNSGSDPSSMETRAHYNSSNKSYTLNGTK  164 (392)
T ss_dssp             HTTCHHHHHHHHHHHHTTHHHHHHHSCHHHHHHHHHHHHTTSSCEEEECCBTTBSSCGGGCCCEEEEETTTTEEEEEEEE
T ss_pred             HHhCcHHHHHHHHHHhHHHHHHHHhCCHHHHHHHHHHHhCCCeEEEEEECCCCCCcCccccEEEEEEeCCCCEEEEEEEE
Confidence            99999887766666545566788899999999999999999999999999999999999999999999  9999999999


Q ss_pred             eeecCCCCCCEEEEEEEeCCCCCeeEEEEeCCc--eec
Q 026317          204 RWIGNSTFADVLVIFARNTTTNQINGYANQSIK--FVL  239 (240)
Q Consensus       204 ~~vs~~~~Ad~~~v~a~~~~~~~~~~flVp~~~--~~~  239 (240)
                      .||||+..||+++|.|++++ +++++|+||++.  ++|
T Consensus       165 ~~vs~~~~Ad~~~v~a~~~~-g~~~~flV~~~~pGv~v  201 (392)
T 1siq_A          165 TWITNSPMADLFVVWARCED-GCIRGFLLEKGMRGLSA  201 (392)
T ss_dssp             EEEETGGGCSEEEEEEEETT-SCEEEEEEETTCTTEEC
T ss_pred             EeecCCcccCEEEEEEEECC-CCEEEEEEeCCCCCeEe
Confidence            99999999999999999863 458999999976  543

>3mpi_A Glutaryl-COA dehydrogenase; alpha-beta fold, oxidoreductase; HET: FAD GRA; 2.05A {Desulfococcus multivorans} PDB: 3mpj_A*

Probab=100.00  E-value=9.1e-38  Score=275.51  Aligned_cols=185  Identities=30%  Similarity=0.465  Sum_probs=172.5

Q ss_pred             CCCCCCHHHHHHHHHHHHHHHhhccccHHHHHHhCCCC-HHHHHHHHhcCcCCC-ccccCCCCCC--CHHHHHHHHHHHH
Q 026317           51 FDDLLTSEEQAVRMKVRECMEKEIAPIMAEYWEKAEFP-FHVIPKLGALRVAGG-TIKGYGCPGH--SVTGAAIAIAEIA  126 (240)
Q Consensus        51 m~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~d~~~~~~-~~~~~~l~~~Gl~~l-~p~~~GG~g~--~~~~~~~v~e~la  126 (240)
                      |+|.++++++++++.+|+|+.+.+.|.+.+.|+.+.+| .++|++|++.||+++ +|++|||.|+  ++.+++.++|+++
T Consensus         1 M~~~~~~~~~~l~~~~r~~~~~~~~~~~~~~d~~~~~~~~~~~~~l~~~Gl~~l~~P~~~GG~g~~~~~~~~~~v~eela   80 (397)
T 3mpi_A            1 MDFNLSKELQMLQKEVRNFVNKKIVPFADQWDNENHFPYEEAVRPMGELGFFGTVIPEEYGGEGMDQGWLAAMIVTEEIA   80 (397)
T ss_dssp             CBCCCCHHHHHHHHHHHHHHHHHTTTTHHHHHHHTCCCTTTTHHHHHHTTTTCTTSCGGGTSCCCTTHHHHHHHHHHHHH
T ss_pred             CCCCCCHHHHHHHHHHHHHHHHhCChhHHHHHhcCCCCHHHHHHHHHHCCCCccCCChhhCCCCCCCCHHHHHHHHHHHH
Confidence            78889999999999999999999999999999999999 999999999999999 9999999999  9999999999999


Q ss_pred             ccCCcchHHHHhhhhHHHH-HHhccCCHHHHHhhchhhhcCCceEEEEeeCCCCCCCcCCCceEEEEeCCEEEEeeeEee
Q 026317          127 RVDASCSTFILVHSSLAML-TIALCGSEEQKQKYLPSLAQLNTIACWALTEPAYGSDASALNTTATKVEGGWILEGQKRW  205 (240)
Q Consensus       127 ~~~~~~~~~~~~~~~~~~~-~l~~~g~~~~~~~~l~~l~~G~~~~~~a~tEp~~Gsd~~~~~t~a~~~~~g~~LnG~K~~  205 (240)
                      ++|+++++.+.+| .++.. .+..+|+++||++|+|++++|+.++|+++|||++|||+..++|+|++++|||+|||+|.|
T Consensus        81 ~~~~~~~~~~~~~-~~~~~~~l~~~g~~~q~~~~l~~~~~g~~~~~~a~tEp~~gsd~~~~~t~A~~~~~g~~lnG~K~~  159 (397)
T 3mpi_A           81 RGSSALRVQLNME-VLGCAYTILTYGSEALKKKYVPKLSSAEFLGGFGITEPDAGSDVMAMSSTAEDKGDHWLLNGSKTW  159 (397)
T ss_dssp             HHCHHHHHHHHHH-TTTTHHHHHHHSCHHHHHHHHHHHHTTSSCCCEECCBTTBSSCGGGCCCEEEECSSEEEEEEEEEE
T ss_pred             hhCchHHHHHHHH-HHhHHHHHHHhCCHHHHHHHHHHHhCCCeEEEEEecCCCCCCCcccCeEEEEEeCCEEEEEEEEEe
Confidence            9999998877777 34555 889999999999999999999999999999999999999999999999999999999999


Q ss_pred             ecCCCCCCEEEEEEEeCCC---CCeeEEEE-eCCc
Q 026317          206 IGNSTFADVLVIFARNTTT---NQINGYAN-QSIK  236 (240)
Q Consensus       206 vs~~~~Ad~~~v~a~~~~~---~~~~~flV-p~~~  236 (240)
                      +||+..||+++|.|+++++   .++++|+| |++.
T Consensus       160 ~s~~~~Ad~~~v~a~~~~~~~~~g~~~flV~~~~~  194 (397)
T 3mpi_A          160 ISNAAQADVLIYYAYTDKAAGSRGLSAFVIEPRNF  194 (397)
T ss_dssp             EETTTTCSSEEEEEESCGGGGGGSEEEEEECTTTS
T ss_pred             eCCCcccCEEEEEEEcCCCCCCCceEEEEEEcCCC
Confidence            9999999999999998542   46899999 8873

>4hr3_A Putative acyl-COA dehydrogenase; ssgcid, seattle structural genomics center for infectious DI niaid; HET: FAD; 1.80A {Mycobacterium abscessus}

Probab=100.00  E-value=1.9e-37  Score=275.01  Aligned_cols=190  Identities=18%  Similarity=0.147  Sum_probs=163.0

Q ss_pred             cCCCCCCHHHHHHHHHHHHHHHhhccccHHHHHHhC------------------CCCHHHHHHHHhcCcCCC-ccccCCC
Q 026317           50 QFDDLLTSEEQAVRMKVRECMEKEIAPIMAEYWEKA------------------EFPFHVIPKLGALRVAGG-TIKGYGC  110 (240)
Q Consensus        50 ~m~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~d~~~------------------~~~~~~~~~l~~~Gl~~l-~p~~~GG  110 (240)
                      .|++.++++++++++.+|+|+++.+.|.+.+.++..                  .+|+++|++|++.||+++ +|++|||
T Consensus         4 ~M~~~~~~~~~~l~~~~r~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~e~G~~~~~~P~~~GG   83 (415)
T 4hr3_A            4 SMDFAPSARAAELIAAVREFIDAEVMPVERAVLAHHDELLGARAGTTAELWHVPPELDSLKAKARAAGLWNLFLPDPELG   83 (415)
T ss_dssp             ---CCCCHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTTCSCSGGGGSCCTHHHHHHHHHHHTTCSSTTCCCTTTS
T ss_pred             CCCCCCCHHHHHHHHHHHHHHHHhCCccHHHHhhhccccccccccccccccCcchhHHHHHHHHHhCCCcCcCCCHHHCC
Confidence            388899999999999999999999888877665543                  267899999999999999 9999999


Q ss_pred             CCCCHHHHHHHHHHHHccCCcchHHHHh-hhhHHHHHHhccCCHHHHHhhchhhhcCCceEEEEeeCCC-CCCCcCCCce
Q 026317          111 PGHSVTGAAIAIAEIARVDASCSTFILV-HSSLAMLTIALCGSEEQKQKYLPSLAQLNTIACWALTEPA-YGSDASALNT  188 (240)
Q Consensus       111 ~g~~~~~~~~v~e~la~~~~~~~~~~~~-~~~~~~~~l~~~g~~~~~~~~l~~l~~G~~~~~~a~tEp~-~Gsd~~~~~t  188 (240)
                      .|+++.+++.++|+++++|.+..++... +...+...|..+|+++||++|||++++|+.++|+++|||+ +|||+..++|
T Consensus        84 ~g~~~~~~~~v~eel~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~q~~~~l~~~~~G~~~~~~a~tEp~~~gsd~~~~~t  163 (415)
T 4hr3_A           84 GGLSNSEYAPLAEQMGRSLFAPTVFNCNAPDSGNMEVLHRYGSQEQKEVWLEPLLEGDIRSAFCMTEPDVASSDATNMAA  163 (415)
T ss_dssp             CCCCHHHHHHHHHHHTTCSSHHHHTTCCTTHHHHHHHHHHHCCHHHHHHTHHHHHTTSCEEEEECCCTTSCTTSGGGCCC
T ss_pred             CCCCHHHHHHHHHHHhcccchHHHHHHhccccchHHHHHHhCCHHHHHHHHHHHhCCCceeEEEEcCCCCCCCchhhCee
Confidence            9999999999999999987653332211 1122346788999999999999999999999999999999 9999999999


Q ss_pred             EEEEeCCEEEEeeeEeeecCCCC--CCEEEEEEEeCCC----CCeeEEEEeCCc--eec
Q 026317          189 TATKVEGGWILEGQKRWIGNSTF--ADVLVIFARNTTT----NQINGYANQSIK--FVL  239 (240)
Q Consensus       189 ~a~~~~~g~~LnG~K~~vs~~~~--Ad~~~v~a~~~~~----~~~~~flVp~~~--~~~  239 (240)
                      +|++++|||+|||+|.||||+.+  ||+++|+|+++++    +++++|+||+++  ++|
T Consensus       164 ~A~~~g~g~~lnG~K~~is~a~~~~Ad~~~v~a~~~~~~~~~~g~~~flV~~~~pGv~v  222 (415)
T 4hr3_A          164 TAVVEGDEVVINGRKWWSTGVGHPDCKVIIFMGLTDPNAHRYARHSMVLVPMDTPGITV  222 (415)
T ss_dssp             EEEEETTEEEEEEEEEEEETTTSTTEEEEEEEEECCTTSCTTSSEEEEEEETTSTTEEE
T ss_pred             EEEEECCEEEEeeEEeeECCCCCCCCCEEEEEEEeCCCCCCCCceEEEEEEcCCCceEe
Confidence            99999999999999999999966  9999999998643    479999999976  554

>2z1q_A Acyl-COA dehydrogenase; FAD, structural genomics, NPPSFA, Na project on protein structural and functional analyses; HET: FAD; 2.30A {Thermus thermophilus}

Probab=100.00  E-value=6.8e-37  Score=281.51  Aligned_cols=197  Identities=26%  Similarity=0.375  Sum_probs=172.1

Q ss_pred             ccccccCCCcccccccCCCCCCCCCCCCCCCCcccCCCCCCHHHHHHHHHHHHHHHhhccccHHHHHHh-CCCCHHHHHH
Q 026317           16 ARSSYFNLPALDISVAFPQATPASKFPPCASDYYQFDDLLTSEEQAVRMKVRECMEKEIAPIMAEYWEK-AEFPFHVIPK   94 (240)
Q Consensus        16 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~m~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~d~~-~~~~~~~~~~   94 (240)
                      ++.+|+++ .++.+.++|.                    ++++++++++.+++|+++.+.|...+.+.. ..+|.++|++
T Consensus        10 ~~~~f~~~-~~~~~~~~~~--------------------~~~e~~~l~~~~~~~~~~~~~p~~~~~~~~~~~~p~~~~~~   68 (577)
T 2z1q_A           10 KGGGWLLE-VPERVYTPED--------------------FDESVKEIARTTRTFVEREVLPLLERMEHGELELNVPLMRK   68 (577)
T ss_dssp             STTGGGTS-CCSCCCCGGG--------------------CCHHHHHHHHHHHHHHHTTTHHHHHHHHTTCGGGHHHHHHH
T ss_pred             ccCccccC-CHHHcCCCCC--------------------CCHHHHHHHHHHHHHHhccCchhHHhhhcccCCCCHHHHHH
Confidence            46788888 6665544221                    578899999999999999888875444322 3789999999


Q ss_pred             HHhcCcCCC-ccccCCCCCCCHHHHHHHHHHHHccCCcchHHHHhhhhHHHHHHhccCCHHHHHhhchhhhcCCceEEEE
Q 026317           95 LGALRVAGG-TIKGYGCPGHSVTGAAIAIAEIARVDASCSTFILVHSSLAMLTIALCGSEEQKQKYLPSLAQLNTIACWA  173 (240)
Q Consensus        95 l~~~Gl~~l-~p~~~GG~g~~~~~~~~v~e~la~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~l~~l~~G~~~~~~a  173 (240)
                      |++.||+++ +|++|||.|+++.+.+.++|++ +.|+++++++.+|.+++..+|..+|+++||++|||++++|+.++|++
T Consensus        69 l~e~Gl~~l~vPee~GG~g~~~~~~~~v~eel-~~~~s~~~~~~~~~~~~~~~l~~~Gt~eQk~~~Lp~l~~G~~~~a~a  147 (577)
T 2z1q_A           69 AGELGLLAIDVPEEYGGLDLPKVISTVVAEEL-SGSGGFSVTYGAHTSIGTLPLVYFGTEEQKRKYLPKLASGEWIAAYC  147 (577)
T ss_dssp             HHHTTTTSTTSCGGGTCCCCCHHHHHHHHHHH-TTSCTHHHHHHHHHTTTTHHHHHHCCHHHHHTTHHHHHHTSSCEEEE
T ss_pred             HHHCCCCCcCCChhhCCCCCCHHHHHHHHHHH-hhcccHHHHHhhhHHHHHHHHHHhCCHHHHHHHHHHHhCCCeEEEEE
Confidence            999999999 9999999999999999999999 77888888887776666667889999999999999999999999999


Q ss_pred             eeCCCCCCCcCCCceEEEEe--CCEEEEeeeEeeecCCCCCCEEEEEEEeCCCCCeeEEEEeCC
Q 026317          174 LTEPAYGSDASALNTTATKV--EGGWILEGQKRWIGNSTFADVLVIFARNTTTNQINGYANQSI  235 (240)
Q Consensus       174 ~tEp~~Gsd~~~~~t~a~~~--~~g~~LnG~K~~vs~~~~Ad~~~v~a~~~~~~~~~~flVp~~  235 (240)
                      +|||++|||+..++|+|+++  +++|+|||+|+||||+..||+++|+|++++ +++++|+||++
T Consensus       148 lTEp~aGSD~~~~~t~A~~~~dG~~~vLnG~K~~it~a~~Ad~~~V~Ar~~g-~gis~flVp~~  210 (577)
T 2z1q_A          148 LTEPGSGSDALAAKTRATLSEDGKHYILNGVKQWISNAGFAHLFTVFAKVDG-EHFTAFLVERD  210 (577)
T ss_dssp             CCBTTBSSSGGGCCCEEEECTTSSEEEEEEEEEEEETTTTCSEEEEEEEETT-TEEEEEEEETT
T ss_pred             ecCCCCCCCcccCeeEEEEeCCCCEEEEEEEeeCCCCCCccCEEEEEEEeCC-CeeEEEEEeCC
Confidence            99999999999999999984  557999999999999999999999999864 67999999987

>1r2j_A Protein FKBI; polyketide synthase, polyketide, acyl-COA dehydrogenase, , aldehyde dehydrogenase, oxidoreductase; HET: FAD; 2.10A {Streptomyces hygroscopicus} SCOP: a.29.3.1 e.6.1.1

Probab=100.00  E-value=2e-36  Score=264.39  Aligned_cols=173  Identities=18%  Similarity=0.208  Sum_probs=158.2

Q ss_pred             HHHHHHHHhhccccHHHHHHhCCCCHHHHHHHHhcCcCCC-ccccCCCCCCCHHHHHHHHHHHHccCCcchHHHHhhhhH
Q 026317           64 MKVRECMEKEIAPIMAEYWEKAEFPFHVIPKLGALRVAGG-TIKGYGCPGHSVTGAAIAIAEIARVDASCSTFILVHSSL  142 (240)
Q Consensus        64 ~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~l~~~Gl~~l-~p~~~GG~g~~~~~~~~v~e~la~~~~~~~~~~~~~~~~  142 (240)
                      +.+|+|+++.+.|.+.+.|+.+.+|.++|++|++.||+++ +|++|||.|+++.+++.++|+++++|+++++.+.+|..+
T Consensus         2 ~~~r~~~~~~~~~~~~~~d~~~~~~~~~~~~l~~~Gl~~~~~P~~~GG~g~~~~~~~~v~eel~~~~~~~~~~~~~~~~~   81 (366)
T 1r2j_A            2 PERDALLTDLVGDRAAEWDTSGELPRDLLVRLGADGLLCAEVAAEHGGLGLGSRENGEFTAHVGSLCSSLRSVMTSQGMA   81 (366)
T ss_dssp             -CCHHHHHHHHSSCHHHHHHHTCCCHHHHHHHHHTTTTSTTSCGGGTCCCCCHHHHHHHHHHHHHHCHHHHHHHHHHHHH
T ss_pred             hHHHHHHHHhccccHHHHhhcCCCCHHHHHHHHHCCCCCCCCChhhCCCCCCHHHHHHHHHHHHHHChHHHHHHHHHHHH
Confidence            4578899999999888888899999999999999999999 999999999999999999999999999988877777546


Q ss_pred             HHHHHhccCCHHHHHhhchhhhcCCceEEEEeeCCCCCCCcCCCceEEEEeCCEEEEeeeEeeecCCCCCCEEEEEEEeC
Q 026317          143 AMLTIALCGSEEQKQKYLPSLAQLNTIACWALTEPAYGSDASALNTTATKVEGGWILEGQKRWIGNSTFADVLVIFARNT  222 (240)
Q Consensus       143 ~~~~l~~~g~~~~~~~~l~~l~~G~~~~~~a~tEp~~Gsd~~~~~t~a~~~~~g~~LnG~K~~vs~~~~Ad~~~v~a~~~  222 (240)
                      +...|. +|+++||++|||++++|+ +.|+++|||++|||+..++|+|++++|||+|||+|.||||+..||+++|+|+++
T Consensus        82 ~~~~l~-~g~~~q~~~~l~~~~~G~-~~~~a~tEp~~Gsd~~~~~t~A~~~~~g~~lnG~K~~~s~~~~Ad~~~v~a~~~  159 (366)
T 1r2j_A           82 AWTVQR-LGDAGQRATFLKELTSGK-LAAVGFSERQAGSDLSAMRTRVRLDGDTAVVDGHKVWTTAAAYADHLVVFGLQE  159 (366)
T ss_dssp             HHHHHH-HSCHHHHHHHHHHTTCC--CEEEECCBTTBSSCGGGCCCEEEEETTEEEEEEEEEEETTTTTCSEEEEEEBCS
T ss_pred             HHHHHH-hCCHHHHHHHHHHHhCCC-eeEEEeCCCCCCCchhhCEeEEEEeCCEEEEEEEEecccCCcccCEEEEEEEeC
Confidence            667788 999999999999999999 999999999999999999999999999999999999999999999999999986


Q ss_pred             CCCCeeEEEEeCCc--eec
Q 026317          223 TTNQINGYANQSIK--FVL  239 (240)
Q Consensus       223 ~~~~~~~flVp~~~--~~~  239 (240)
                      + +++++|+||+++  ++|
T Consensus       160 ~-~g~~~flV~~~~~Gv~~  177 (366)
T 1r2j_A          160 D-GSGAVVVVPADTPGVRV  177 (366)
T ss_dssp             S-SCCEEEEEETTSTTEEE
T ss_pred             C-CceEEEEEECCCCCeEe
Confidence            4 378999999986  554

>2uxw_A VERY-long-chain specific acyl-COA dehydrogenase; fatty acid metabolism, transit peptide, disease mutation, LI metabolism, coenzyme A dehydrogenase; HET: FAD TH3; 1.45A {Homo sapiens} PDB: 3b96_A*

Probab=100.00  E-value=5.8e-36  Score=276.34  Aligned_cols=203  Identities=26%  Similarity=0.338  Sum_probs=174.9

Q ss_pred             ccccccCCCcccccccCCCCCCCCCCCCCCCCcccCCCCCCHHHH----HHHHHHHHHHHhhccccHHHHHHhCCCCHHH
Q 026317           16 ARSSYFNLPALDISVAFPQATPASKFPPCASDYYQFDDLLTSEEQ----AVRMKVRECMEKEIAPIMAEYWEKAEFPFHV   91 (240)
Q Consensus        16 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~m~~~l~~~~~----~l~~~~~~~~~~~~~~~~~~~d~~~~~~~~~   91 (240)
                      ++++|.|+|.++.+.++|..                   +++++.    ++++.+++|+.+.+.+  .+.|+...+|.++
T Consensus        26 ~~~lf~g~~~~~~~~~~p~~-------------------l~~~~~~~~~~l~~~~~~~~~~~~~~--~~~d~~~~~p~~~   84 (607)
T 2uxw_A           26 AVGMFKGQLTTDQVFPYPSV-------------------LNEEQTQFLKELVEPVSRFFEEVNDP--AKNDALEMVEETT   84 (607)
T ss_dssp             HHHHTTTCCCCTTTSSCCCC-------------------CCHHHHHHHHHHHHHHHHHHHHTCCH--HHHHHHTSCCHHH
T ss_pred             HHHhcCCCCCHHHhCCCCCC-------------------CCHHHHHHHHHHHHHHHHHHHhhcCH--HHhccccCCCHHH
Confidence            56788898888888775421                   345553    4889999999988755  3456778999999


Q ss_pred             HHHHHhcCcCCC-ccccCCCCCCCHHHHHHHHHHHHccCCcchHHHHhhhhHHHHHHhccCCHHHHHhhchhhhcCCceE
Q 026317           92 IPKLGALRVAGG-TIKGYGCPGHSVTGAAIAIAEIARVDASCSTFILVHSSLAMLTIALCGSEEQKQKYLPSLAQLNTIA  170 (240)
Q Consensus        92 ~~~l~~~Gl~~l-~p~~~GG~g~~~~~~~~v~e~la~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~l~~l~~G~~~~  170 (240)
                      |++|++.||+++ +|++|||.|++..+.+.+.|+++++|+++++++.+|.+++..+|..+|+++||++|||++++|++++
T Consensus        85 ~~~l~e~Gl~~l~~P~e~GG~gl~~~~~~~v~e~l~~~~~s~a~~~~~~~~~g~~~l~~~Gt~eqk~~~Lp~l~~G~~~~  164 (607)
T 2uxw_A           85 WQGLKELGAFGLQVPSELGGVGLCNTQYARLVEIVGMHDLGVGITLGAHQSIGFKGILLFGTKAQKEKYLPKLASGETVA  164 (607)
T ss_dssp             HHHHHHTTTTCTTSCGGGTSCCCCHHHHHHHHHHHHHHCHHHHHHHHHHHTTTTHHHHHHCCHHHHHHHHHHHHTTSSCE
T ss_pred             HHHHHHcCCcCCCCChhhCCCCCCHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHhCCCeEE
Confidence            999999999999 9999999999999999999999999999888877775555678889999999999999999999999


Q ss_pred             EEEeeCCCCCCCcCCCceEEEEeC--CEEEEeeeEeeecCCCCCCEEEEEEEeCC--------CCCeeEEEEeCC--cee
Q 026317          171 CWALTEPAYGSDASALNTTATKVE--GGWILEGQKRWIGNSTFADVLVIFARNTT--------TNQINGYANQSI--KFV  238 (240)
Q Consensus       171 ~~a~tEp~~Gsd~~~~~t~a~~~~--~g~~LnG~K~~vs~~~~Ad~~~v~a~~~~--------~~~~~~flVp~~--~~~  238 (240)
                      |+++|||++|||+..++|+|++++  ++|+|||+|+||||+..||+++|+|++++        .+++++|+||++  .++
T Consensus       165 ~~alTEp~aGSD~~~~~t~A~~~~dG~~y~LnG~K~~is~~~~Ad~~lV~Ar~~~~~~~~g~~~~gis~flVp~~~~Gv~  244 (607)
T 2uxw_A          165 AFCLTEPSSGSDAASIRTSAVPSPCGKYYTLNGSKLWISNGGLADIFTVFAKTPVTDPATGAVKEKITAFVVERGFGGIT  244 (607)
T ss_dssp             EEECCBTTBSSCGGGCCCEEEECTTSSEEEEEEEEEEEETTTTCSEEEEEEEEEEECTTTCCEEEEEEEEEEEGGGSSEE
T ss_pred             EEEecCCCCCCCcccceeEEEEeCCCCEEEEEeEEEeecCCcccCEEEEEEEecCCCcccCCCCCceEEEEEeCCCCCeE
Confidence            999999999999999999999973  47999999999999999999999999842        246899999986  444


Q ss_pred             c
Q 026317          239 L  239 (240)
Q Consensus       239 ~  239 (240)
                      |
T Consensus       245 v  245 (607)
T 2uxw_A          245 H  245 (607)
T ss_dssp             E
T ss_pred             E
Confidence            3

>3owa_A Acyl-COA dehydrogenase; structural genomics, center for structural genomics of infec diseases, csgid, alpha-structure, beta-barrel; HET: MSE FAD 1PE; 1.97A {Bacillus anthracis}

Probab=100.00  E-value=4.4e-36  Score=276.53  Aligned_cols=181  Identities=29%  Similarity=0.456  Sum_probs=162.3

Q ss_pred             CCCHHHHHHHHHHHHHHHhhccccHHHHHHhC-CCCHHHHHHHHhcCcCCC-ccccCCCCCCCHHHHHHHHHHHHccCCc
Q 026317           54 LLTSEEQAVRMKVRECMEKEIAPIMAEYWEKA-EFPFHVIPKLGALRVAGG-TIKGYGCPGHSVTGAAIAIAEIARVDAS  131 (240)
Q Consensus        54 ~l~~~~~~l~~~~~~~~~~~~~~~~~~~d~~~-~~~~~~~~~l~~~Gl~~l-~p~~~GG~g~~~~~~~~v~e~la~~~~~  131 (240)
                      .++++++++++.+|+|+.+.+.|...+.++.+ .+|.++|++|++.||+++ +|++|||.|+++.+++.++|++++++. 
T Consensus        32 ~lt~eq~~l~~~vr~f~~~~~~p~~~~~d~~~~~~~~~~~~~l~e~Gl~gl~vPee~GG~G~~~~~~~~v~Eel~~~~~-  110 (597)
T 3owa_A           32 DFSSEHKMIAKTTEDFIVNEVLPELEYLEQHEFDRSVRLLKEAGELGLLGADVPEEYGGIGLDKVSSALIAEKFSRAGG-  110 (597)
T ss_dssp             GCCHHHHHHHHHHHHHHHHHTGGGHHHHTTTCHHHHHHHHHHHHHTTTTCTTSCGGGTCCCCCHHHHHHHHHHHGGGTH-
T ss_pred             CCCHHHHHHHHHHHHHHHHhCchhHHHHHhcCCcCCHHHHHHHHHCCCCcCCCChhhCCCCCCHHHHHHHHHHHHccch-
Confidence            37899999999999999999999888777655 688999999999999999 999999999999999999999999864 


Q ss_pred             chHHHHhhhhHHHHHHhccCCHHHHHhhchhhhcCCceEEEEeeCCCCCCCcCCCceEEEEe--CCEEEEeeeEeeecCC
Q 026317          132 CSTFILVHSSLAMLTIALCGSEEQKQKYLPSLAQLNTIACWALTEPAYGSDASALNTTATKV--EGGWILEGQKRWIGNS  209 (240)
Q Consensus       132 ~~~~~~~~~~~~~~~l~~~g~~~~~~~~l~~l~~G~~~~~~a~tEp~~Gsd~~~~~t~a~~~--~~g~~LnG~K~~vs~~  209 (240)
                      .+..+..|.+++...+..+|+++||++|||++++|++++|+++|||++|||+.+++|+|+++  +++|+|||+|.||||+
T Consensus       111 ~~~~~~~~~~~~~~~l~~~Gt~eQk~~~Lp~la~Ge~~~a~alTEp~aGSD~~~~~T~A~~~~dG~~yvLnG~K~~is~a  190 (597)
T 3owa_A          111 FAITHGAHVGIGSLPIVLFGNEEQKKKYLPLLATGEKLAAYALTEPGSGSDALGAKTTARLNAEGTHYVLNGEKQWITNS  190 (597)
T ss_dssp             HHHHHHHHHTTTTHHHHHHCCHHHHHHHHHHHHHTSSCEEEECCBTTBSSSGGGCCCEEEECTTSSEEEEEEEEEEEETT
T ss_pred             HHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHhCCCcceeeEecCCCCCCCcccceeEEEEeCCCCEEEEeeEEEEeCCC
Confidence            34445556555666788899999999999999999999999999999999999999999985  4569999999999999


Q ss_pred             CCCCEEEEEEEeCCCCCeeEEEEeCCc
Q 026317          210 TFADVLVIFARNTTTNQINGYANQSIK  236 (240)
Q Consensus       210 ~~Ad~~~v~a~~~~~~~~~~flVp~~~  236 (240)
                      .+||+++|+|++++ +++++|+||++.
T Consensus       191 ~~Ad~~lV~Art~~-~g~s~flV~~~~  216 (597)
T 3owa_A          191 AFADVFIVYAKIDG-EHFSAFIVEKDY  216 (597)
T ss_dssp             TTCSEEEEEEEETT-TEEEEEEEETTS
T ss_pred             ccCCEEEEEEEeCC-CceEEEEEeCCC
Confidence            99999999999863 579999999875

>2c12_A Nitroalkane oxidase; oxidoreductase, flavoenzyme, acyl-COA dehydrogenase, long cell EDGE, FAD, inhibitor, flavoprotein; HET: SPM FAD PE4; 2.07A {Fusarium oxysporum} SCOP: a.29.3.1 e.6.1.1 PDB: 2c0u_A* 2zaf_A* 2reh_A* 3d9g_A* 3d9f_A* 3d9d_A* 3d9e_A* 3fcj_A*

Probab=100.00  E-value=2.4e-35  Score=263.20  Aligned_cols=185  Identities=22%  Similarity=0.295  Sum_probs=164.7

Q ss_pred             CCCCCCHHHHHHHHHHHHHHHhhccccHHHHHHh----CCCC--HHHHHHHHhcCcCCC-ccccCCCCCCCHHHHHHHHH
Q 026317           51 FDDLLTSEEQAVRMKVRECMEKEIAPIMAEYWEK----AEFP--FHVIPKLGALRVAGG-TIKGYGCPGHSVTGAAIAIA  123 (240)
Q Consensus        51 m~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~d~~----~~~~--~~~~~~l~~~Gl~~l-~p~~~GG~g~~~~~~~~v~e  123 (240)
                      |++.+++++.++++.+|+|+++.+.|...+.++.    +.+|  .++|++|++.||+++ +|++|||.|+++.+++.++|
T Consensus         2 M~~~~~~e~~~l~~~~r~f~~~~~~p~~~~~d~~~~~~~~~~~~~~~~~~l~~~Gl~~~~~P~~~GG~g~~~~~~~~v~e   81 (439)
T 2c12_A            2 VDFKLSPSQLEARRHAQAFANTVLTKASAEYSTQKDQLSRFQATRPFYREAVRHGLIKAQVPIPLGGTMESLVHESIILE   81 (439)
T ss_dssp             CBCCCCHHHHHHHHHHHHHHHHTGGGHHHHHTTCSSHHHHHHTTHHHHHHHHHTTTTGGGSBGGGTCCBCCHHHHHHHHH
T ss_pred             CCCCCCHHHHHHHHHHHHHHHHhCChhHHHHhhcccccCCCCChHHHHHHHHHCCCCCCCCChhhCCCCCCHHHHHHHHH
Confidence            7788999999999999999999998887665542    3455  899999999999999 99999999999999999999


Q ss_pred             HHHccCCcchHHHHhhhhHHHHHHhccCCHHHHHhhchhhh--cCCceEEEEeeCCCCCC-----CcCCCceEEEEeCCE
Q 026317          124 EIARVDASCSTFILVHSSLAMLTIALCGSEEQKQKYLPSLA--QLNTIACWALTEPAYGS-----DASALNTTATKVEGG  196 (240)
Q Consensus       124 ~la~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~l~~l~--~G~~~~~~a~tEp~~Gs-----d~~~~~t~a~~~~~g  196 (240)
                      ++++.|+++++.+.+| .++...+..+|+++||++|||+++  +|+.++|+++|||++||     |+..++|+|++++||
T Consensus        82 ela~~~~~~~~~~~~~-~~~~~~l~~~g~~~q~~~~l~~~~~~~G~~~~~~a~tEp~~Gs~~~~sd~~~~~t~A~~~~~g  160 (439)
T 2c12_A           82 ELFAVEPATSITIVAT-ALGLMPVILCDSPSLQEKFLKPFISGEGEPLASLMHSEPNGTANWLQKGGPGLQTTARKVGNE  160 (439)
T ss_dssp             HHHTTCCTTHHHHHHH-HHHHHHHHHSSCHHHHHHHTGGGGSSCSCCCEEEECCCTTCSTTTTCTTSCCCSCEEEEETTE
T ss_pred             HHHhhChHHHHHHHHh-HHHHHHHHHhCCHHHHHHHHHHHhhcCCCEEEEEEecCCCCCCCccccccccceeEEEEcCCE
Confidence            9999999998877666 356667889999999999999999  69999999999999997     588889999999999


Q ss_pred             EEEeeeEeeecCCC-----CCCEEEEEEEe-C----CC-------CCeeEEEEeCCc
Q 026317          197 WILEGQKRWIGNST-----FADVLVIFARN-T----TT-------NQINGYANQSIK  236 (240)
Q Consensus       197 ~~LnG~K~~vs~~~-----~Ad~~~v~a~~-~----~~-------~~~~~flVp~~~  236 (240)
                      |+|||+|.||||+.     .||+++|+|++ +    ++       .++++|+||+++
T Consensus       161 ~~lnG~K~~is~~~~~~~~~Ad~~~v~ar~~~~~~~~~~~~~~~~~g~~~flV~~~~  217 (439)
T 2c12_A          161 WVISGEKLWPSNSGGWDYKGADLACVVCRVSDDPSKPQDPNVDPATQIAVLLVTRET  217 (439)
T ss_dssp             EEEEEEEECCTTTTTTTSSCCSEEEEEEEECSCTTSCCCTTSCGGGGEEEEEECHHH
T ss_pred             EEEEeEEEeecCCCccccccCcEEEEEEEcCCcccCccccccCCCCceEEEEEECCC
Confidence            99999999999997     89999999998 5    21       368999999764

>3mkh_A Nitroalkane oxidase; oxidoreductase flavoenzyme, acyl-COA dehydrogen flavoprotein, oxidoreductase; HET: FAD; 2.00A {Podospora anserina}

Probab=100.00  E-value=5.5e-36  Score=267.27  Aligned_cols=186  Identities=19%  Similarity=0.294  Sum_probs=162.4

Q ss_pred             ccCCCCCCHHHHHHHHHHHHHHHhhccccHHHHHH----hC-CCC--HHHHHHHHhcCcCCC-ccccCCCCCCCHHHHHH
Q 026317           49 YQFDDLLTSEEQAVRMKVRECMEKEIAPIMAEYWE----KA-EFP--FHVIPKLGALRVAGG-TIKGYGCPGHSVTGAAI  120 (240)
Q Consensus        49 ~~m~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~d~----~~-~~~--~~~~~~l~~~Gl~~l-~p~~~GG~g~~~~~~~~  120 (240)
                      |.|+|.++++++++++.+|+|+++.+.|...+.++    .. .+|  +++|++|++.||+++ +|++|||.|+++.+++.
T Consensus         1 m~m~~~~~~e~~~l~~~~r~f~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gl~~l~~P~e~GG~g~~~~~~~~   80 (438)
T 3mkh_A            1 MAIDFHLSASQKGTYQAARSLARNLLMPARQTYLQHPPNSPLRFQSTQPTYAAAVSAGILKGQISPAHGGTGGTLIESAI   80 (438)
T ss_dssp             -CCBCCCCHHHHHHHHHHHHHHHHTHHHHHHHHTTSCTTCHHHHHTTHHHHHHHHHTTTTGGGSCGGGTCCCCCHHHHHH
T ss_pred             CCCCCCCCHHHHHHHHHHHHHHHHhcCcHHHHHhhccccccCcCCCcHHHHHHHHhCCCCCCCCCcccCCCCCCHHHHHH
Confidence            34889999999999999999999999888766543    22 454  899999999999999 99999999999999999


Q ss_pred             HHHHHHccCCcchHHHHhhhhHHHHHHhccCCHHHHHhhchhhhcC--CceEEEEeeCCCCCC-----CcCCCceEEEEe
Q 026317          121 AIAEIARVDASCSTFILVHSSLAMLTIALCGSEEQKQKYLPSLAQL--NTIACWALTEPAYGS-----DASALNTTATKV  193 (240)
Q Consensus       121 v~e~la~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~l~~l~~G--~~~~~~a~tEp~~Gs-----d~~~~~t~a~~~  193 (240)
                      ++|++++.|+++++.+..+ .++...+..+|+++ |++||+++++|  +.++|+++|||++||     |+..++|+|+++
T Consensus        81 v~eela~~~~~~~~~~~~~-~~~~~~l~~~g~~~-~~~~l~~~~~G~g~~~~~~a~tEp~~gs~~~~sd~~~~~t~A~~~  158 (438)
T 3mkh_A           81 LVEECYSVEPSAALTIFAT-GLGLTPINLAAGPQ-HAEFLAPFLSGEGSPLASLVFSEPGGVANALEKGAPGFQTTARLE  158 (438)
T ss_dssp             HHHHHHHHCHHHHHHHHHH-HHHHHHHHHHCCGG-GHHHHGGGSSSCSCCCEEEECCCTTCCTTTTCTTSCCCSCEEEEE
T ss_pred             HHHHHHhhChhHHHHHHHh-hHHHHHHHhhCCHH-HHHHHHHHhcCCCCceEEEEEccCCCCCCccccccccceeEEEEe
Confidence            9999999999888766554 45566778899999 99999999997  589999999999998     689999999999


Q ss_pred             CCEEEEeeeEeeecCCC-----CCCEEEEEEEeCC---------CCCeeEEEEeCCc
Q 026317          194 EGGWILEGQKRWIGNST-----FADVLVIFARNTT---------TNQINGYANQSIK  236 (240)
Q Consensus       194 ~~g~~LnG~K~~vs~~~-----~Ad~~~v~a~~~~---------~~~~~~flVp~~~  236 (240)
                      +|||+|||+|.||||+.     .||+++|+|+++.         .+++++|+||+++
T Consensus       159 g~g~~lnG~K~~is~a~~~~~~~Ad~~~v~a~~~~~~~~~~~~~~~g~~~flV~~~~  215 (438)
T 3mkh_A          159 GDEWVINGEKMWATNCAGWDFKGCDLACVVCRDATTPLEEGQDPENKVMIILVTRAD  215 (438)
T ss_dssp             TTEEEEEEEECSCTTTTCTTSSCCSEEEEEEEECSSCCCTTCCGGGGEEEEEEEHHH
T ss_pred             CCEEEEEeEEEEecCCCccccccCcEEEEEEEecCcccCcccCCCCceEEEEEecCc
Confidence            99999999999999997     8999999999842         1368999999753

>2wbi_A Acyl-COA dehydrogenase family member 11; human, phosphoprotein, oxidoreducta; HET: FAD; 2.80A {Homo sapiens}

Probab=100.00  E-value=7.4e-34  Score=252.87  Aligned_cols=190  Identities=21%  Similarity=0.239  Sum_probs=153.2

Q ss_pred             CcccCCCCCCHHHHHHHHHHHHHHHhhccccHH---HHHHh-----CC-----CCHHHHHHHHhcCcCCC-ccccCCCCC
Q 026317           47 DYYQFDDLLTSEEQAVRMKVRECMEKEIAPIMA---EYWEK-----AE-----FPFHVIPKLGALRVAGG-TIKGYGCPG  112 (240)
Q Consensus        47 ~~~~m~~~l~~~~~~l~~~~~~~~~~~~~~~~~---~~d~~-----~~-----~~~~~~~~l~~~Gl~~l-~p~~~GG~g  112 (240)
                      +...|++.++++++++++.+|+|+++++.|...   +.++.     ..     ++.++|++|++.||+++ +|+   |.|
T Consensus        15 ~~~~m~~~~~~e~~~l~~~~r~f~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gl~~l~~P~---G~g   91 (428)
T 2wbi_A           15 DTTGQLFVQTRKGQEVLIKVKHFMKQHILPAEKEVTEFYVQNENSVDKWGKPLVIDKLKEMAKVEGLWNLFLPA---VSG   91 (428)
T ss_dssp             -------CCCHHHHHHHHHHHHHHHHTHHHHHHHHHC----------CCSCCHHHHHHHHHHHHTTCCSTTCHH---HHC
T ss_pred             CCccCCCCCCHHHHHHHHHHHHHHHhhCCchhcchhHHhhhccccccccCCcccHHHHHHHHHHCCCCeecCCC---CCC
Confidence            344588889999999999999999998877665   44432     23     34789999999999999 898   789


Q ss_pred             CCHHHHHHHHHHHHccCCcc-hHHHHhhhhHHHHHHhccCCHHHHHhhchhhhcCCceEEEEeeCCC-CCCCcCCCceEE
Q 026317          113 HSVTGAAIAIAEIARVDASC-STFILVHSSLAMLTIALCGSEEQKQKYLPSLAQLNTIACWALTEPA-YGSDASALNTTA  190 (240)
Q Consensus       113 ~~~~~~~~v~e~la~~~~~~-~~~~~~~~~~~~~~l~~~g~~~~~~~~l~~l~~G~~~~~~a~tEp~-~Gsd~~~~~t~a  190 (240)
                      +++.+++.++|+++++|.+. ++....+..++...|..+|+++||++|||++++|+.++|+++|||+ +|||+..++|+|
T Consensus        92 ~~~~~~~~v~eel~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~qk~~~l~~l~~G~~~~~~a~tEp~~aGsd~~~~~t~A  171 (428)
T 2wbi_A           92 LSHVDYALIAEETGKCFFAPDVFNCQAPDTGNMEVLHLYGSEEQKKQWLEPLLQGNITSCFCMTEPDVASSDATNIECSI  171 (428)
T ss_dssp             CCHHHHHHHHHHHTTSTTHHHHTTCCTTHHHHHHHHHHHCCHHHHHHTHHHHHHTSSEEEEECCCTTSCTTSGGGCCCEE
T ss_pred             CCHHHHHHHHHHHHhhcchhhhHhhhccchhHHHHHHHhCCHHHHHHHHHHHhCCCeEEEEEEecCCcCCCCcccceEEE
Confidence            99999999999999998532 2211122224566788899999999999999999999999999999 999999999999


Q ss_pred             EEeCCEEEEeeeEeeecCCCC--CCEEEEEEEeCCC-----CCeeEEEEeCC--ceec
Q 026317          191 TKVEGGWILEGQKRWIGNSTF--ADVLVIFARNTTT-----NQINGYANQSI--KFVL  239 (240)
Q Consensus       191 ~~~~~g~~LnG~K~~vs~~~~--Ad~~~v~a~~~~~-----~~~~~flVp~~--~~~~  239 (240)
                      ++++|||+|||+|.||||+.+  ||+++|+|+++++     +++++|+||++  .++|
T Consensus       172 ~~~~~g~~lnG~K~~is~a~~~~Ad~~~v~art~~~~~~~~~g~~~flV~~~~pGv~v  229 (428)
T 2wbi_A          172 QRDEDSYVINGKKWWSSGAGNPKCKIAIVLGRTQNTSLSRHKQHSMILVPMNTPGVKI  229 (428)
T ss_dssp             EEETTEEEEEEEEEEEETTTSTTEEEEEEEEECCCTTSCGGGCEEEEEEETTSTTEEE
T ss_pred             EEeCCEEEEEeEEeccCCCCCCcCCEEEEEEEeCCccCCCCCceEEEEEECCCCcEEe
Confidence            999999999999999999988  9999999998643     26899999987  4544

>3m9v_A FAD-dependent oxidoreductase; KIJD3, fatty acyl-COA dehydrogenase family, kijanose, kijani FAD, flavoprotein; HET: TYD; 2.05A {Actinomadura kijaniata}

Probab=100.00  E-value=2.1e-33  Score=250.71  Aligned_cols=183  Identities=19%  Similarity=0.274  Sum_probs=158.9

Q ss_pred             CCCCCCHHHHHHHHHHHHHHHhhccccHHHHHHhCCCCHHHHHHHHhcCcCCC-ccccCCCCC-CCHHHHHHHHHHHHcc
Q 026317           51 FDDLLTSEEQAVRMKVRECMEKEIAPIMAEYWEKAEFPFHVIPKLGALRVAGG-TIKGYGCPG-HSVTGAAIAIAEIARV  128 (240)
Q Consensus        51 m~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~l~~~Gl~~l-~p~~~GG~g-~~~~~~~~v~e~la~~  128 (240)
                      |++.++++++++++.+++|+. .+.|.+.+.|+.+.+|.++|++|++.||+++ +|++|||.| .++.+++.++|+++++
T Consensus        16 m~~~lt~e~~~l~~~~r~~~~-~~~~~a~~~d~~~~~~~~~~~~l~~~Gl~~l~~P~~~GG~gl~~~~~~~~v~eel~~~   94 (439)
T 3m9v_A           16 LYAPVTPAGRVLLDRLAAHLP-RIRSTAAEHDRDGTFPTDTFDALRKDGLMGATVPAELGGLGVDRLYDVAVALLAVARA   94 (439)
T ss_dssp             TSSCSSHHHHHHHHHHHTTHH-HHHHHHHHHHHHTCCCHHHHHHHHHTTGGGTTSCGGGTSCCCCCHHHHHHHHHHHHHH
T ss_pred             CCCCCCHHHHHHHHHHHHHHH-HHhhhHHHHHhcCCCCHHHHHHHHHCCCccCCCChhhCCCCCCCHHHHHHHHHHHHhh
Confidence            889999999999999999997 4788888889999999999999999999999 999999999 8999999999999999


Q ss_pred             CCcchHHHHhhhhHHHHH--HhccCCHHH---HHhhchhhhcCCceEEEEeeCCCCCCCcCCCceEEEEeCCEEEEeeeE
Q 026317          129 DASCSTFILVHSSLAMLT--IALCGSEEQ---KQKYLPSLAQLNTIACWALTEPAYGSDASALNTTATKVEGGWILEGQK  203 (240)
Q Consensus       129 ~~~~~~~~~~~~~~~~~~--l~~~g~~~~---~~~~l~~l~~G~~~~~~a~tEp~~Gsd~~~~~t~a~~~~~g~~LnG~K  203 (240)
                      |+++++.+.+|......+  +..+|+++|   |++||+++++|+.++|+++|||++  |...+.|   +++|||+|||+|
T Consensus        95 ~~~~~~~~~~~~~~~~~~~~~~~~gt~~q~~~k~~~l~~l~~g~~~~~~a~tEp~~--~~~~~~t---~~~~g~vlnG~K  169 (439)
T 3m9v_A           95 DASTALALHMQLSRGLTLGYEWRHGDERARTLAERILRGMVAGDAVVCSGIKDHHT--AVTTLRP---DGAGGWLLSGRK  169 (439)
T ss_dssp             CHHHHHHHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHTCCCEEEECEECTT--CCCEEEE---CSSSCEEEEEEE
T ss_pred             ChHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhCCCceEEEeecCCCC--CCCceee---ccCCEEEEEeEE
Confidence            999888777665444333  346799999   999999999999999999999975  3333322   278889999999


Q ss_pred             eeecCCCCCCEEEEEEEeCCC---CCeeEEEEeCCc--eec
Q 026317          204 RWIGNSTFADVLVIFARNTTT---NQINGYANQSIK--FVL  239 (240)
Q Consensus       204 ~~vs~~~~Ad~~~v~a~~~~~---~~~~~flVp~~~--~~~  239 (240)
                      +||||+.+|||++|.|+++++   .++++|+||+++  ++|
T Consensus       170 ~~~s~a~~Ad~~~v~art~~~~~~~g~~~flVp~~~pGv~i  210 (439)
T 3m9v_A          170 TLVSMAPVGTHFVINARTDGTDGPPRLASPVVTRDTPGFTV  210 (439)
T ss_dssp             EEETTGGGCSEEEECEEECC--CCCCEEEEEEETTCTTEEE
T ss_pred             EeecCccccCEEEEEEEecCCCCCceeEEEEEECCCCCeEE
Confidence            999999999999999998643   468999999986  665

>3mxl_A Nitrososynthase; flavin monooxygenase, acyl-COA dehydrogenas oxidoreductase; 3.15A {Micromonospora carbonacea}

Probab=100.00  E-value=1.9e-33  Score=247.54  Aligned_cols=183  Identities=19%  Similarity=0.250  Sum_probs=157.9

Q ss_pred             CCCCCCHHHHHHHHHHHHHHHhhccccHHHHHHhCCCCHHHHHHHHhcCcCCC-ccccCCCCC-CCHHHHHHHHHHHHcc
Q 026317           51 FDDLLTSEEQAVRMKVRECMEKEIAPIMAEYWEKAEFPFHVIPKLGALRVAGG-TIKGYGCPG-HSVTGAAIAIAEIARV  128 (240)
Q Consensus        51 m~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~l~~~Gl~~l-~p~~~GG~g-~~~~~~~~v~e~la~~  128 (240)
                      |...++++++++++.+|+|+.+ +.|.+.+.|+++.+|.++|++|++.||+++ +|++|||.| .++.+++.++|+++++
T Consensus         5 ~~~~lt~e~~~~~~~~r~~~~~-~~~~a~~~d~~~~~p~~~~~~l~~~Gl~~~~~P~~~GG~g~~~~~~~~~~~eel~~~   83 (395)
T 3mxl_A            5 LRAPLTPAGRTVVDLLAGVIPR-ISAEAADRDRTGTFPVEAFEQFAKLGLMGATVPAELGGLGLTRLYDVATALMRLAEA   83 (395)
T ss_dssp             SSSCCSHHHHHHHHHHTTTHHH-HHHHHHHHHHHTCCCHHHHHHHHHHTGGGCSSCTTTTSCCCCCHHHHHHHHHHHHTT
T ss_pred             cccCCCHHHHHHHHHHHHHHHH-HhhchHHHhhhCCCCHHHHHHHHHCCCcCcCCChhhCCCCCcCHHHHHHHHHHHHhh
Confidence            5567899999999999999974 788888999999999999999999999999 999999999 9999999999999999


Q ss_pred             CCcchHHHHhhhhHHHHHH--hccCCHHHH---HhhchhhhcCCceEEEEeeCCCCCCCcCCCceEEEEeCCEEEEeeeE
Q 026317          129 DASCSTFILVHSSLAMLTI--ALCGSEEQK---QKYLPSLAQLNTIACWALTEPAYGSDASALNTTATKVEGGWILEGQK  203 (240)
Q Consensus       129 ~~~~~~~~~~~~~~~~~~l--~~~g~~~~~---~~~l~~l~~G~~~~~~a~tEp~~Gsd~~~~~t~a~~~~~g~~LnG~K  203 (240)
                      |+++++.+.+|..++...+  ..+|+++||   ++|||++++|+.++|+++|||++|+  ..++|   +++|||+|||+|
T Consensus        84 ~~~~~~~~~~~~~~~~~~~~~~~~g~~~qk~~~~~~l~~~~~g~~~~~~a~tEp~~~~--~~~~t---~~~~g~~lnG~K  158 (395)
T 3mxl_A           84 DASTALAWHVQLSRGLTLTYEWQHGTPPVRAMAERLLRAMAEGEAAVCGALKDAPGVV--TELHS---DGAGGWLLSGRK  158 (395)
T ss_dssp             CHHHHHHHHHHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHTSCCEECCCSBCTTCC--CEEEE---CSSSCEEEEEEE
T ss_pred             CcHHHHHHHHHHHHHHHHHHHhhcCCHHHHhHHHHHHHHHhcCCcEEEEEecCCCCCC--CceEE---ecCCEEEEeeEE
Confidence            9998887777754444433  357999999   9999999999999999999998653  22222   278889999999


Q ss_pred             eeecCCCCCCEEEEEEEeCCC---CCeeEEEEeCCc--eec
Q 026317          204 RWIGNSTFADVLVIFARNTTT---NQINGYANQSIK--FVL  239 (240)
Q Consensus       204 ~~vs~~~~Ad~~~v~a~~~~~---~~~~~flVp~~~--~~~  239 (240)
                      .||||+..||+++|+|+++++   .++++|+||+++  ++|
T Consensus       159 ~~is~a~~Ad~~~v~a~~~~~~~~~g~~~flV~~~~pGv~v  199 (395)
T 3mxl_A          159 VLVSMAPIATHFFVHAQRRDDDGSVFLAVPVVHRDAPGLTV  199 (395)
T ss_dssp             EEETTGGGCSEECCCEEEECTTSCEEEECCCEETTCTTEEE
T ss_pred             EEecCccccCEEEEEEEeCCCCCCCceEEEEEECCCCceEe
Confidence            999999999999999998543   258899999986  554

>2or0_A Hydroxylase; APC7385, rhodococcus SP. RHA1, structu genomics, PSI-2, protein structure initiative, midwest CENT structural genomics, MCSG; HET: MSE; 2.10A {Rhodococcus SP}

Probab=99.98  E-value=5.1e-32  Score=239.99  Aligned_cols=173  Identities=13%  Similarity=0.071  Sum_probs=148.8

Q ss_pred             CCCCCHHHHHHHHHHHHHHHhhccccHHHHHHhCCCCHHHHHHHHhcCcCCC-ccccCCCCCCCHHHHHHHHHHHHccCC
Q 026317           52 DDLLTSEEQAVRMKVRECMEKEIAPIMAEYWEKAEFPFHVIPKLGALRVAGG-TIKGYGCPGHSVTGAAIAIAEIARVDA  130 (240)
Q Consensus        52 ~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~l~~~Gl~~l-~p~~~GG~g~~~~~~~~v~e~la~~~~  130 (240)
                      ++.++++++++++.+++|+.+ +.|.+.+.|+.+.+|.++|++|++.||+++ +|++|||.|+++.+++.++|+++++|+
T Consensus        15 ~~~~~~~~~~l~~~~r~~~~~-~~~~a~~~d~~~~~p~~~~~~l~~~Gl~~l~~P~e~GG~g~~~~~~~~v~eela~~~~   93 (414)
T 2or0_A           15 ENLYFQGMGRVLDRIEVVAEE-IRGQAVQSEADCRLTDAAAGLLRDSGAIRLLQPRLYGGYEVHPREFAETVMGVAALDG   93 (414)
T ss_dssp             --------CHHHHHHHHTHHH-HHHHHHHHHHHTSCCHHHHHHHHHHTGGGTTSCGGGTCCCCCHHHHHHHHHHHHHHCH
T ss_pred             cCCCCccHHHHHHHHHHHHHH-HHHhHHHHHhcCCCCHHHHHHHHHCCCchhcCchhhCCCCCCHHHHHHHHHHHHhhCh
Confidence            455788999999999999986 888888888899999999999999999999 999999999999999999999999999


Q ss_pred             cchHHHHhhhhHHHHHHhccCCHHHHHhhchhhhcCCceEEEEeeCCCCCCCcCCCceEEEEeCCEEEEeeeEeeecCCC
Q 026317          131 SCSTFILVHSSLAMLTIALCGSEEQKQKYLPSLAQLNTIACWALTEPAYGSDASALNTTATKVEGGWILEGQKRWIGNST  210 (240)
Q Consensus       131 ~~~~~~~~~~~~~~~~l~~~g~~~~~~~~l~~l~~G~~~~~~a~tEp~~Gsd~~~~~t~a~~~~~g~~LnG~K~~vs~~~  210 (240)
                      ++++++.++ .++...|..+|+++||++|+|   +|+.++|+++| |         +|+|++++|||+|||+|.||||+.
T Consensus        94 ~~~~~~~~~-~~~~~~l~~~g~~~q~~~~l~---~g~~~~a~a~t-p---------~t~A~~~~~g~~lnG~K~~is~a~  159 (414)
T 2or0_A           94 ASGWVTGIV-GVHPWELAFADPQVQEEIWGE---DNDTWMASPYA-P---------MGVATPVDGGYVLKGRWSFSSGTD  159 (414)
T ss_dssp             HHHHHHHHH-TTHHHHHTTSCHHHHHHHHSS---CTTCCEECCCS-C---------CEEEEEETTEEEEEEEEEEETTGG
T ss_pred             HHHHHHHHH-HHHHHHHHhCCHHHHHHHHcc---CCCeEEEeccC-C---------CceeEEECCeEEEEeeEeccCCCc
Confidence            988877666 366778889999999999999   69989999887 4         589999999999999999999999


Q ss_pred             CCCEEEEEEEeCC---CC---CeeEEEEeCCceec
Q 026317          211 FADVLVIFARNTT---TN---QINGYANQSIKFVL  239 (240)
Q Consensus       211 ~Ad~~~v~a~~~~---~~---~~~~flVp~~~~~~  239 (240)
                      .||+++|+|++++   ..   ++++|+||++.++|
T Consensus       160 ~Ad~~~v~a~~~~~~g~~~~~g~~~flV~~~gv~v  194 (414)
T 2or0_A          160 HCQWAFLGAMVGDGEGGIATPSSLHVILPRTDYQI  194 (414)
T ss_dssp             GCSEEEEEEEECC-----CCCSEEEEEEEGGGCEE
T ss_pred             hhhEEEEEEEecCCCCCcccceeEEEEEEhhhcEE
Confidence            9999999999852   22   78999999987665

>2jbr_A P-hydroxyphenylacetate hydroxylase C2 oxygenase C; flavoenzyme hydroxylase, oxidoreductase; 2.3A {Acinetobacter baumannii} PDB: 2jbs_A* 2jbt_A*

Probab=99.97  E-value=1.6e-30  Score=230.95  Aligned_cols=165  Identities=18%  Similarity=0.162  Sum_probs=147.2

Q ss_pred             HHHHHHHHHHHHhhccccHHHHHHhCCCCHHHHHHHHhcCcCCC-ccccCCCCCCCHHHHHHHHHHHHccCCcchHHHHh
Q 026317           60 QAVRMKVRECMEKEIAPIMAEYWEKAEFPFHVIPKLGALRVAGG-TIKGYGCPGHSVTGAAIAIAEIARVDASCSTFILV  138 (240)
Q Consensus        60 ~~l~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~l~~~Gl~~l-~p~~~GG~g~~~~~~~~v~e~la~~~~~~~~~~~~  138 (240)
                      .++++.+++|+. .+.|.+.+.|+.+.+|.++|++|.+.||+++ +|++|||.|+++.+++.++|+++++|+++++.+..
T Consensus        38 ~~l~~~~r~~~~-~~~~~a~~~d~~~~~p~~~~~~l~~~Gl~~l~~P~e~GG~g~~~~~~~~v~eela~~~~~~~~~~~~  116 (422)
T 2jbr_A           38 VSMLEKIQQILP-QIAKNAESAEQLRRVPDENIKLLKEIGLHRAFQPKVYGGLEMSLPDFANCIVTLAGACAGTAWAFSL  116 (422)
T ss_dssp             CCHHHHHHHHHH-HHHHTHHHHHHHTSCCHHHHHHHHHTTGGGSSSCGGGTCCCCCHHHHHHHHHHHHHHCHHHHHHHHH
T ss_pred             HHHHHHHHHHHH-HHHHhhHHHHHcCCCCHHHHHHHHHCCchhcCCchhcCCCCCCHHHHHHHHHHHHhhCcCHHHHHHH
Confidence            358899999987 5788888888899999999999999999999 99999999999999999999999999998876665


Q ss_pred             hhhHHHHHHhccCCHHHHHhhchhhhcCCceEEEEeeCCCCCCCcCCCceEEEEeCCEEEEeeeEeeecCCCCCCEEEEE
Q 026317          139 HSSLAMLTIALCGSEEQKQKYLPSLAQLNTIACWALTEPAYGSDASALNTTATKVEGGWILEGQKRWIGNSTFADVLVIF  218 (240)
Q Consensus       139 ~~~~~~~~l~~~g~~~~~~~~l~~l~~G~~~~~~a~tEp~~Gsd~~~~~t~a~~~~~g~~LnG~K~~vs~~~~Ad~~~v~  218 (240)
                      + .++...+..+|+++||++|+++   |+.+.|+++| |         +|+|++++|||+|||+|.||||+.+||+++|+
T Consensus       117 ~-~~~~~~l~~~g~~~q~~~~l~~---g~~~~a~a~t-p---------~t~A~~~~~g~~lnG~K~~is~a~~Ad~~~v~  182 (422)
T 2jbr_A          117 L-CTHSHQIAMFSKQLQDEIWLKD---PDATASSSIA-P---------FGKVEEVEGGIILNGDYGWSSGCDHAEYAIVG  182 (422)
T ss_dssp             H-HHHHHHHTTSCHHHHHHHHTTC---TTCCEEEECS-C---------CSEEEEETTEEEEEEEEEEETTGGGCSEEEEE
T ss_pred             H-HHHHHHHHhCCHHHHHHHHccC---CCeEEEeecC-C---------CeeEEEeCCEEEEeeeEeeecCCccccEEEEE
Confidence            5 4667788899999999999996   8889999987 4         47999999999999999999999999999999


Q ss_pred             EEeCC-C--CCeeEEEEeCCceec
Q 026317          219 ARNTT-T--NQINGYANQSIKFVL  239 (240)
Q Consensus       219 a~~~~-~--~~~~~flVp~~~~~~  239 (240)
                      |++++ +  .++++|+||++.++|
T Consensus       183 a~~~~~~g~~g~~~flV~~~gv~v  206 (422)
T 2jbr_A          183 FNRFDADGNKIYSFGVIPRSDYEI  206 (422)
T ss_dssp             EEEECTTSCEEEEEEEEEGGGCEE
T ss_pred             EEecCCCCCceeEEEEEEcCceEE
Confidence            99853 2  268999999987765

>2rfq_A 3-HSA hydroxylase, oxygenase; rhodococcus SP. RHA1, structural genomics protein structure initiative, midwest center for structural genomics, MCSG; HET: 1PS; 1.65A {Rhodococcus SP} PDB: 3aff_A 3afe_A

Probab=99.97  E-value=2.9e-30  Score=227.24  Aligned_cols=165  Identities=12%  Similarity=0.104  Sum_probs=147.3

Q ss_pred             HHHHHHHHHHHHhhccccHHHHHHhCCCCHHHHHHHHhcCcCCC-ccccCCCCCCCHHHHHHHHHHHHccCCcchHHHHh
Q 026317           60 QAVRMKVRECMEKEIAPIMAEYWEKAEFPFHVIPKLGALRVAGG-TIKGYGCPGHSVTGAAIAIAEIARVDASCSTFILV  138 (240)
Q Consensus        60 ~~l~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~l~~~Gl~~l-~p~~~GG~g~~~~~~~~v~e~la~~~~~~~~~~~~  138 (240)
                      .++++.+++|+.+ +.|.+.+.|+.+.+|.++|++|++.||+++ +|++|||.|+++.+++.++|+++++|+++++++.+
T Consensus        10 ~~l~~~~~~~~~~-~~~~~~~~d~~~~~p~~~~~~l~~~Gl~~~~~P~~~GG~g~~~~~~~~v~eela~~~~~~~~~~~~   88 (394)
T 2rfq_A           10 HEVMQRLDALLPT-LRERAQETEDLRRIPDDSMKALQETGFFRLLQPEQWGGYQADPVLFYSAVRKIASACGSTGWVSSI   88 (394)
T ss_dssp             SHHHHHHHHHHHH-HHHTHHHHHHHTSCCHHHHHHHHHHTGGGTTSCGGGTCCCCCHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred             HHHHHHHHHHHHH-HHHhHHHHHhcCCCCHHHHHHHHHCCCceecCchhhCCCCCCHHHHHHHHHHHHhhChhHHHHHHH
Confidence            3689999999975 888888888899999999999999999999 99999999999999999999999999998887666


Q ss_pred             hhhHHHHHHhccCCHHHHHhhchhhhcCCceEEEEeeCCCCCCCcCCCceEEEEeCCEEEEeeeEeeecCCCCCCEEEEE
Q 026317          139 HSSLAMLTIALCGSEEQKQKYLPSLAQLNTIACWALTEPAYGSDASALNTTATKVEGGWILEGQKRWIGNSTFADVLVIF  218 (240)
Q Consensus       139 ~~~~~~~~l~~~g~~~~~~~~l~~l~~G~~~~~~a~tEp~~Gsd~~~~~t~a~~~~~g~~LnG~K~~vs~~~~Ad~~~v~  218 (240)
                      | .++...+..+|+++||++|++   +|+.+.|+++| |         +|+|++++|||+|||+|.||||+.+||+++|+
T Consensus        89 ~-~~~~~~l~~~g~~~q~~~~l~---~g~~~~~~a~t-p---------~t~A~~~~~g~~lnG~K~~is~a~~Ad~~~v~  154 (394)
T 2rfq_A           89 I-GVHNWHLALFSQQAQEDVWGN---DTDVRISSSYA-P---------MGAGQVVDGGYTVNGAWAWSSGCDHASWAVLG  154 (394)
T ss_dssp             H-HHHHHHHTTSCHHHHHHHHSS---CTTCCEEEECS-C---------SEEEEEETTEEEEEEEEEEETTGGGCSEEEEE
T ss_pred             H-HHHHHHHHhCCHHHHHHHhCC---CCCeEEEeccC-C---------CceEEEeCCeEEEeeeEeccCCCcccceEEEe
Confidence            6 366778889999999999999   68889999987 4         58999999999999999999999999999999


Q ss_pred             EEeCCCC---CeeEEEEeCCceec
Q 026317          219 ARNTTTN---QINGYANQSIKFVL  239 (240)
Q Consensus       219 a~~~~~~---~~~~flVp~~~~~~  239 (240)
                      |++++++   ++++|+||++.++|
T Consensus       155 a~~~~~g~~~~~~~flV~~~gv~v  178 (394)
T 2rfq_A          155 GPVIKDGRPVDFVSFLIPREDYRI  178 (394)
T ss_dssp             EEEEETTEEEEEEEEEEEGGGCEE
T ss_pred             eeecCCCCCCceeEEEEEhhhcEE
Confidence            9983222   68999999987765

>1w07_A Acyl-COA oxidase; oxidoreductase, peroxisomal beta-oxidation, FAD cofactor; HET: FAD; 2.0A {Arabidopsis thaliana} SCOP: a.29.3.2 a.29.3.2 e.6.1.2 PDB: 2fon_A*

Probab=99.93  E-value=1.5e-26  Score=215.43  Aligned_cols=174  Identities=21%  Similarity=0.190  Sum_probs=140.6

Q ss_pred             CCCCC-HHHHHHHHHHHHHHHhhccccHHHHHHhCCCCHHHHHHHHhcCcCCCccccCCCCCCCHHHHHHHHHHHHccCC
Q 026317           52 DDLLT-SEEQAVRMKVRECMEKEIAPIMAEYWEKAEFPFHVIPKLGALRVAGGTIKGYGCPGHSVTGAAIAIAEIARVDA  130 (240)
Q Consensus        52 ~~~l~-~~~~~l~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~l~~~Gl~~l~p~~~GG~g~~~~~~~~v~e~la~~~~  130 (240)
                      ++.++ +++.++++.+++|+.+..... ...+....++++.|+.|++.|+++.+|++||   ++..+...+.++++   .
T Consensus        23 ~~~~~~~e~~~lr~~vr~~l~~~~~~~-~~~~~~~~~~~~~~~~l~~~g~l~~~p~e~G---~~~~~~~~v~e~~~---~   95 (659)
T 1w07_A           23 IVWAGSRHAFEVSDRIARLVASDPVFE-KSNRARLSRKELFKSTLRKCAHAFKRIIELR---LNEEEAGRLRHFID---Q   95 (659)
T ss_dssp             HHHHSSHHHHHHHHHHHHHHHTCGGGC-CTTTTSSCHHHHHHHHHHHHHHHHHHHHHTT---CCHHHHHHHHHHHC---C
T ss_pred             HHHCCChHHHHHHHHHHHHHhcCcccc-cCCccCCChHHHHHHHHHHHHHHHHhHHHhC---CCchHHHHHHHHhc---c
Confidence            34445 889999999999998763321 1111123567889999999988877888887   35677777766663   3


Q ss_pred             cchHHHHhhhhHHHHHHhccCCHHHHHhhchhhhcCCceEEEEeeCCCCCCCcCCCceEEEEe--CCEEEEe-----eeE
Q 026317          131 SCSTFILVHSSLAMLTIALCGSEEQKQKYLPSLAQLNTIACWALTEPAYGSDASALNTTATKV--EGGWILE-----GQK  203 (240)
Q Consensus       131 ~~~~~~~~~~~~~~~~l~~~g~~~~~~~~l~~l~~G~~~~~~a~tEp~~Gsd~~~~~t~a~~~--~~g~~Ln-----G~K  203 (240)
                      +++  +.+|..++...|..+|+++||++|||++++|+.++|+|+|||++|||+.+++|+|+++  +|||+||     |+|
T Consensus        96 ~~~--~~~~~~l~~~~l~~~Gt~eqk~~~L~~i~~Ge~~~~~a~TEp~~GSd~~~l~TtA~~d~~~~g~vLntP~~~G~K  173 (659)
T 1w07_A           96 PAY--VDLHWGMFVPAIKGQGTEEQQKKWLSLANKMQIIGCYAQTELGHGSNVQGLETTATLDPKTDEFVIHTPTQTASK  173 (659)
T ss_dssp             CCH--HHHHHHTHHHHHHHHSCHHHHHHHHHHHHTTSSCEEEECCBTTBSSCGGGCCCEEEEETTTTEEEEECCSGGGSE
T ss_pred             chh--hhhHHhHHHHHHHHcCCHHHHHHHhhHHhcCCEEEEEEecCCCCCCCcccceeEEEEcCCCCEEEEcCCCCCeEE
Confidence            444  4566556777888999999999999999999999999999999999999999999998  6899999     999


Q ss_pred             eeecC-CCCCCEEEEEEEeCCC---CCeeEEEEeC
Q 026317          204 RWIGN-STFADVLVIFARNTTT---NQINGYANQS  234 (240)
Q Consensus       204 ~~vs~-~~~Ad~~~v~a~~~~~---~~~~~flVp~  234 (240)
                      +|||| +..|||++|+|+++.+   .|+++|+||.
T Consensus       174 ~~is~~a~~Ad~~lV~Ar~~~~~~~~G~~~flVp~  208 (659)
T 1w07_A          174 WWPGGLGKVSTHAVVYARLITNGKDYGIHGFIVQL  208 (659)
T ss_dssp             ECCTTTTTTCSEEEEEEEEEETTEEEEEEEEEEEC
T ss_pred             EeecCCCCCCCEEEEEEEECCCCCCCCeEEEEEEc
Confidence            99999 8999999999998532   3689999994

>3djl_A Protein AIDB; alpha helix, beta-barrel, FAD, flavoprotein, oxidoreductase; HET: FAD; 1.70A {Escherichia coli} PDB: 3u33_A*

Probab=99.90  E-value=1.1e-24  Score=198.58  Aligned_cols=138  Identities=17%  Similarity=0.137  Sum_probs=113.2

Q ss_pred             HHHHHHHHhcCcCCC-c--cccCCCCCCCHHHHHHHHHHHHccCCcchHHHHhhhhHHHHHHhccCCHHHHHhhchhhhc
Q 026317           89 FHVIPKLGALRVAGG-T--IKGYGCPGHSVTGAAIAIAEIARVDASCSTFILVHSSLAMLTIALCGSEEQKQKYLPSLAQ  165 (240)
Q Consensus        89 ~~~~~~l~~~Gl~~l-~--p~~~GG~g~~~~~~~~v~e~la~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~l~~l~~  165 (240)
                      +++++.+.+.||+++ +  |++|||.+........    ++..+....+.+.++. .+...|..+| ++||++|+|++++
T Consensus        89 ~~~~~~l~e~Gl~~l~~~~p~~~Gg~~~~~~~~~~----~~~~~~~~~~p~~~t~-~~~~~L~~~g-~eqk~~~lp~l~s  162 (541)
T 3djl_A           89 HLLMQALCTNRVHNLAWEEDARSGAFVARAARFML----HAQVEAGSLCPITMTF-AATPLLLQML-PAPFQDWTTPLLS  162 (541)
T ss_dssp             HHHHHHHHHTTTTTGGGSTTCCTTHHHHHHHHHHH----HHHHCSTTHHHHHHHH-HHHHHHHHHC-CGGGGGGHHHHTC
T ss_pred             HHHHHHHHhCCcccCCCCCCCCCCcHHHHHHHHHH----HHHHHHhhhcHHHHHH-HHHHHHHHcC-HHHHHHHHHHHhC
Confidence            678899999999999 8  6899965444333333    3333444444344443 3556677788 8999999999999


Q ss_pred             CCc-------------eEEEEeeCCCCCCCcCCCceEEEEe-CCEEEEeeeEeeecCCCCCCEEEEEEEeCCCCCeeEEE
Q 026317          166 LNT-------------IACWALTEPAYGSDASALNTTATKV-EGGWILEGQKRWIGNSTFADVLVIFARNTTTNQINGYA  231 (240)
Q Consensus       166 G~~-------------~~~~a~tEp~~Gsd~~~~~t~a~~~-~~g~~LnG~K~~vs~~~~Ad~~~v~a~~~~~~~~~~fl  231 (240)
                      |+.             +.|+++|||++|||+..++|+|+++ +|+|+|||+|+|+| +.+||+++|+|+++  +|+++|+
T Consensus       163 ge~~p~~~~~~~~~g~~~~~a~TEp~~GSDl~~~~T~A~~~~~g~y~LnG~K~f~S-a~~Ad~~lVlArt~--~Gis~fl  239 (541)
T 3djl_A          163 DRYDSHLLPGGQKRGLLIGMGMTEKQGGSDVMSNTTRAERLEDGSYRLVGHKWFFS-VPQSDAHLVLAQTA--GGLSCFF  239 (541)
T ss_dssp             SCCCCCSSCGGGSSSCCEEEECCBTTBSSCGGGCCCEEEECTTSCEEEEEEEEEEE-CTTSSEEEEEEEET--TEEEEEE
T ss_pred             CCcccccccccccccceeEEEeccCCcCCCcccceeEEEEcCCCeEEEEEEEEeec-ccccCEEEEEEEEC--CceEEEE
Confidence            998             7899999999999999999999999 78899999999999 89999999999985  6899999


Q ss_pred             EeCC
Q 026317          232 NQSI  235 (240)
Q Consensus       232 Vp~~  235 (240)
                      ||++
T Consensus       240 Vp~~  243 (541)
T 3djl_A          240 VPRF  243 (541)
T ss_dssp             EESB
T ss_pred             EecC
Confidence            9987

>2ddh_A Acyl-COA oxidase; beta barrel, alpha UP-DOWN bundle, oxidoreductase; HET: FAD HXD; 2.07A {Rattus norvegicus} SCOP: a.29.3.2 a.29.3.2 e.6.1.2 PDB: 1is2_A*

Probab=99.85  E-value=4e-21  Score=178.87  Aligned_cols=166  Identities=16%  Similarity=0.226  Sum_probs=121.1

Q ss_pred             CHHHHHHHHHHHHHHHhhccccHHH-------HHHhCCCCHHHHHHHHhcCcCCCccccCCCCCCCHHHHHHHHHHHHcc
Q 026317           56 TSEEQAVRMKVRECMEKEIAPIMAE-------YWEKAEFPFHVIPKLGALRVAGGTIKGYGCPGHSVTGAAIAIAEIARV  128 (240)
Q Consensus        56 ~~~~~~l~~~~~~~~~~~~~~~~~~-------~d~~~~~~~~~~~~l~~~Gl~~l~p~~~GG~g~~~~~~~~v~e~la~~  128 (240)
                      +++..++++++++|+.+.  |....       .++......+..+.|.+. |     ++|||.+  ..+... .+++...
T Consensus        26 ~~~~~~~r~~~~~~l~~~--p~~~~~~~~~~~~~e~~~~~~~~~~~l~~~-~-----~~~~~~~--~~~~~~-~~~~~~~   94 (661)
T 2ddh_A           26 SPENTRRRREIENLILND--PDFQHEDYNFLTRSQRYEVAVKKSATMVKK-M-----REYGISD--PEEIMW-FKNSVHR   94 (661)
T ss_dssp             SHHHHHHHHHHHHHHHTC--GGGCCSCGGGSCHHHHHHHHHHHHHHHHHH-H-----HHTTCCC--HHHHHH-HHHHHHT
T ss_pred             ChhHHHHHHHHHHHHhcC--cccccCCcCCCCHHHHHHHHHHHHHHHHHH-H-----HHcCCCC--chHHHH-HHHHhcc
Confidence            467788999999999865  21110       011111111222333332 2     5677765  333333 6666654


Q ss_pred             CCcchHHHHhhhhHHHHHHhccCCHHHHHhhchhhhcCCceEEEEeeCCCCCCCcCCCceEEEEe--CCEEEEe-----e
Q 026317          129 DASCSTFILVHSSLAMLTIALCGSEEQKQKYLPSLAQLNTIACWALTEPAYGSDASALNTTATKV--EGGWILE-----G  201 (240)
Q Consensus       129 ~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~l~~l~~G~~~~~~a~tEp~~Gsd~~~~~t~a~~~--~~g~~Ln-----G  201 (240)
                      ..+  ..+.+|..+++..|..+|+++|+++|||++++|+.++|+|+|||++|||+.+++|+|+++  +|||+||     |
T Consensus        95 ~~~--~~~~~h~~l~~~~i~~~Gt~eq~~~~L~~i~~Ge~~g~~a~TE~g~GSd~~~l~TtA~~d~~~~~~vLntP~~~G  172 (661)
T 2ddh_A           95 GHP--EPLDLHLGMFLPTLLHQATAEQQERFFMPAWNLEITGTYAQTEMGHGTHLRGLETTATYDPKTQEFILNSPTVTS  172 (661)
T ss_dssp             TCC--CTTHHHHHTHHHHHC-CCCHHHHHHHHHHHHTTSSCEEEECCBTTBSSCGGGCCCEEEEETTTTEEEEECCSSTT
T ss_pred             chh--hHHHHHHHHHHHHHHHhCCHHHHHHHHHHHhCCCeeEEEeeccCCcCcCcccceeEEEEcCCCCeEEEcCCCCCe
Confidence            333  234466556778899999999999999999999999999999999999999999999999  7899999     9


Q ss_pred             eEeeecC-CCCCCEEEEEEEeCCC---CCeeEEEEeC
Q 026317          202 QKRWIGN-STFADVLVIFARNTTT---NQINGYANQS  234 (240)
Q Consensus       202 ~K~~vs~-~~~Ad~~~v~a~~~~~---~~~~~flVp~  234 (240)
                      +|+|+|| +..|||++|+|++..+   .|+++|+||.
T Consensus       173 ~K~wis~~a~~Ad~~vV~Ar~~~~~~~~G~~~FlVp~  209 (661)
T 2ddh_A          173 IKWWPGGLGKTSNHAIVLAQLITQGECYGLHAFVVPI  209 (661)
T ss_dssp             SEECCTTTTTTCSEEEEEEEEEETTEEEEEEEEEEEC
T ss_pred             EEEecCCCcccCCEEEEEEEEccCCCCCceEEEEEec
Confidence            9999999 7899999999998532   3789999994

>1u8v_A Gamma-aminobutyrate metabolism dehydratase/isomerase; ALFA-helixes, beta-strands, lyase; HET: FAD; 1.60A {Clostridium aminobutyricum} SCOP: a.29.3.1 e.6.1.1

Probab=99.74  E-value=4.1e-18  Score=153.48  Aligned_cols=90  Identities=20%  Similarity=0.194  Sum_probs=77.9

Q ss_pred             HHhccCC--HHHHHhhchhhhcCCceEEEEeeCCCCC--------CCc-CCCceEEEEeCCEEEEeeeEeeecCCCCCCE
Q 026317          146 TIALCGS--EEQKQKYLPSLAQLNTIACWALTEPAYG--------SDA-SALNTTATKVEGGWILEGQKRWIGNSTFADV  214 (240)
Q Consensus       146 ~l~~~g~--~~~~~~~l~~l~~G~~~~~~a~tEp~~G--------sd~-~~~~t~a~~~~~g~~LnG~K~~vs~~~~Ad~  214 (240)
                      .+..+|+  ++||++||+++++|+.++|+|+|||+.|        ||+ ..++ ++++++|||+|||+|+|+||+..||+
T Consensus       119 ~~~~~Gt~~~eqk~~~L~~l~~Ge~~~a~a~TEP~~~rs~~~~~gSD~~~~~~-~a~r~gdg~vlnG~K~~iT~a~~Ad~  197 (490)
T 1u8v_A          119 IDQKYGTNYHKNFTEYLKYIQENDLIVDGAMTDPKGDRGLAPSAQKDPDLFLR-IVEKREDGIVVRGAKAHQTGSINSHE  197 (490)
T ss_dssp             HHHHHCCCHHHHHHHHHHHHHHHTCCEEEECCCCCSCTTSCGGGCSSTTSSCE-EEEECSSEEEEEEEECSCTTCTTCSE
T ss_pred             HHHHhCCCHHHHHHHHHHHHHhCCceeeeeeeCCCCCCcccccccCCcccceE-EEEEECCEEEEEeEEEEeeCCcccCE
Confidence            4558999  9999999999999999999999999864        675 3444 88999999999999999999999999


Q ss_pred             EEEEEEeCC----CCCeeEEEEeCCc
Q 026317          215 LVIFARNTT----TNQINGYANQSIK  236 (240)
Q Consensus       215 ~~v~a~~~~----~~~~~~flVp~~~  236 (240)
                      ++|+++++.    .+++++|+||++.
T Consensus       198 ~iV~art~~~~~~~~~~s~flVp~d~  223 (490)
T 1u8v_A          198 HIIMPTIAMTEADKDYAVSFACPSDA  223 (490)
T ss_dssp             EEECCSSCCCGGGGGGCEEEEEETTC
T ss_pred             EEEEEecCCCCCCCCeEEEEEEECCC
Confidence            999999742    1348899999874

>2yyk_A 4-hydroxyphenylacetate-3-hydroxylase; structurome, riken spring-8 center, oxygnase component, 4- hydroxyphenylacetate 3-monooxygenase; 1.60A {Thermus thermophilus} PDB: 2yyl_A* 2yym_A* 2yyi_A* 2yyg_A* 2yyj_A*

Probab=99.69  E-value=7.2e-17  Score=145.14  Aligned_cols=82  Identities=20%  Similarity=0.251  Sum_probs=71.3

Q ss_pred             HHHHHhhchhhhcCCceEEEEeeCCCCC--------CCcCCCceEEE-EeCCEEEEeeeEeeecCCCCCCEEEEEEEeCC
Q 026317          153 EEQKQKYLPSLAQLNTIACWALTEPAYG--------SDASALNTTAT-KVEGGWILEGQKRWIGNSTFADVLVIFARNTT  223 (240)
Q Consensus       153 ~~~~~~~l~~l~~G~~~~~~a~tEp~~G--------sd~~~~~t~a~-~~~~g~~LnG~K~~vs~~~~Ad~~~v~a~~~~  223 (240)
                      ++||++|||++++|+.++|+|+|||+.|        ||+. +.++++ +++|||+|||+|+|+|| ..||+++|+|+++.
T Consensus       123 ~eqk~~~L~~l~~Ge~~~a~a~TEP~~grs~~~s~gsd~~-~~~~~~~~~gdg~VlnG~K~~iT~-~~Ad~~iV~art~~  200 (481)
T 2yyk_A          123 AENVRNYYRYLRDQDLATTHALTNPQVNRARPPSGQPDPY-IPVGVVKQTEKGIVVRGARMTATF-PLADEVLIFPSILL  200 (481)
T ss_dssp             HHHHHHHHHHHHHHTCCEEEEECCCCCCTTC----CCCSC-SBCEEEEECSSEEEEEEEEEEEEC-CCSSEEEECCCSCC
T ss_pred             HHHHHHHHHHHHcCCeEEEEeeECCCCCCCCCccccCCcc-cceEEEEEECCEEEEEeEEEEecc-ccccEEEEEEecCC
Confidence            6999999999999999999999999976        6664 566664 78999999999999999 99999999999852


Q ss_pred             --C--CCeeEEEEeCCc
Q 026317          224 --T--NQINGYANQSIK  236 (240)
Q Consensus       224 --~--~~~~~flVp~~~  236 (240)
                        +  +++++|+||++.
T Consensus       201 ~~~~~~~~s~flVp~dt  217 (481)
T 2yyk_A          201 QAGSEKYALAFALPTST  217 (481)
T ss_dssp             CTTCGGGCEEEEEETTC
T ss_pred             CCCCCCeEEEEEEECCC
Confidence              1  348999999874

>3hwc_A Chlorophenol-4-monooxygenase component 2; beta barrel, helix bundle, oxidoreductase; 2.50A {Burkholderia cepacia}

Probab=99.57  E-value=2.4e-15  Score=135.61  Aligned_cols=85  Identities=18%  Similarity=0.161  Sum_probs=71.0

Q ss_pred             cCC--HHHHHhhchhhhcCCceEEEEeeCCCC--------CCCcCCCceEEEEeCCEEEEeeeEeeecCCCCCCEEEEEE
Q 026317          150 CGS--EEQKQKYLPSLAQLNTIACWALTEPAY--------GSDASALNTTATKVEGGWILEGQKRWIGNSTFADVLVIFA  219 (240)
Q Consensus       150 ~g~--~~~~~~~l~~l~~G~~~~~~a~tEp~~--------Gsd~~~~~t~a~~~~~g~~LnG~K~~vs~~~~Ad~~~v~a  219 (240)
                      +|+  .+|+++|||++++|+.+.|+|+|||+.        |||+ .++++ .+++|||+|||+|.||||+..||+++|+|
T Consensus       127 ~~~~~~eq~~~~L~~l~~Ge~~~a~AltEP~~~rs~~~~~GSD~-~~~~~-~~~gdg~VlnG~K~~iT~a~~Ad~~lV~a  204 (515)
T 3hwc_A          127 EGRNLTQNIHNFLKLLREKDLNCPLNFVDPQTDRSSDAAQARSP-NLRIV-EKTDDGIIVNGVKAVGTGIAFGDYMHIGC  204 (515)
T ss_dssp             TTCCHHHHHHHHHHHHHHTTCCCCEECCCCCCCCCSCTTTSCCS-BCEEE-EECSSEEEEEEEEEEEESGGGCSEEEECC
T ss_pred             cCCCHHHHHHHHHHHHHcCCcEEEEEeeCCCCCcccccccCCCc-ceEEE-EEECCEEEEEEEEEEECCccccCEEEEEE
Confidence            555  588999999999999999999999986        5787 55443 45689999999999999999999999999


Q ss_pred             Ee-CC--CCCeeEEEEeCCc
Q 026317          220 RN-TT--TNQINGYANQSIK  236 (240)
Q Consensus       220 ~~-~~--~~~~~~flVp~~~  236 (240)
                      ++ +.  .+.+++|+||++.
T Consensus       205 ~t~~~~~~~~~s~FlVp~d~  224 (515)
T 3hwc_A          205 LYRPGIPGEQVIFAAIPTNT  224 (515)
T ss_dssp             CCCTTCCGGGCEEEEEETTC
T ss_pred             EecCCCCCCeEEEEEEECCC
Confidence            97 32  1238999999864

>4g5e_A 2,4,6-trichlorophenol 4-monooxygenase; oxidoreductase; 2.50A {Cupriavidus necator JMP134}

Probab=98.62  E-value=5.2e-08  Score=87.97  Aligned_cols=83  Identities=14%  Similarity=0.077  Sum_probs=63.0

Q ss_pred             HHHHhhchhhhcCCceEEEEeeCCCCC-----CCcCCCceE-EEEeCCEEEEeeeEeeecCCCCCCEEEEEEEeCCC---
Q 026317          154 EQKQKYLPSLAQLNTIACWALTEPAYG-----SDASALNTT-ATKVEGGWILEGQKRWIGNSTFADVLVIFARNTTT---  224 (240)
Q Consensus       154 ~~~~~~l~~l~~G~~~~~~a~tEp~~G-----sd~~~~~t~-a~~~~~g~~LnG~K~~vs~~~~Ad~~~v~a~~~~~---  224 (240)
                      +...+|+..+..+++..+.++|+|...     +....+-.+ .+++++||+|||.|.|+||+..||+++|++++...   
T Consensus       134 ~n~~~y~~~~~~~DL~~~~a~~dPk~dRs~~~~~q~d~~l~Vve~~~dGiVVnGaK~~~T~a~~Ad~i~V~a~t~~~~~~  213 (517)
T 4g5e_A          134 KNIVDFVNFAKKHDLNCAPQFVDPQMDRSNPDAQQRSPGLRVIEKNDKGIVVSGVKAIGTGVAFADWIHIGVFFRPGIPG  213 (517)
T ss_dssp             HHHHHHHHHHHHHTCCEEEECCCCCC-----------CBCEEEEECSSEEEEEEEEEEEESGGGCSEEEECCCCCTTCCG
T ss_pred             HHHHHHHHHHHhcCceeeeeeeCCCCCCCCCchhcCCCceEEEEEcCCeEEEeeEehhhcCccccCEEEEEeecCCCCCc
Confidence            445789999999999999999999631     111122233 34578999999999999999999999999987432   


Q ss_pred             CCeeEEEEeCCc
Q 026317          225 NQINGYANQSIK  236 (240)
Q Consensus       225 ~~~~~flVp~~~  236 (240)
                      ++.++|+||++.
T Consensus       214 d~~~~F~VP~dt  225 (517)
T 4g5e_A          214 DQIIFAATPVNT  225 (517)
T ss_dssp             GGCEEEEEETTC
T ss_pred             cceEEEEEecCC
Confidence            357899999874

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	240
d1ivha2	236	e.6.1.1 (A:6-241) Isovaleryl-coa dehydrogenase, NM	5e-34
d1ukwa2	227	e.6.1.1 (A:32-258) Medium chain acyl-CoA dehydroge	1e-26
d2d29a2	233	e.6.1.1 (A:2-234) Acyl-CoA dehydrogenase {Thermus	2e-26
d1rx0a2	231	e.6.1.1 (A:10-240) Isobutyryl-CoA dehydrogenase {H	5e-26
d3mdea2	231	e.6.1.1 (A:11-241) Medium chain acyl-CoA dehydroge	6e-25
d1jqia2	231	e.6.1.1 (A:4-234) Butyryl-CoA dehydrogenase, NM do	5e-23
d1siqa2	236	e.6.1.1 (A:3-238) Glutaryl-CoA dehydrogenase GCDH	4e-21
d1buca2	232	e.6.1.1 (A:1-232) Butyryl-CoA dehydrogenase, NM do	5e-17
d1w07a3	271	e.6.1.2 (A:2-272) Acyl-coenzyme A oxidase 1, domai	2e-11
d2ddha3	267	e.6.1.2 (A:1-267) Peroxisomal acyl-CoA oxidase-II,	3e-09
d1u8va2	275	e.6.1.1 (A:1-275) 4-hydroxybutyryl-CoA dehydratase	2e-06
d2c12a2	259	e.6.1.1 (A:2-260) Nitroalkane oxidase {Fusarium ox	1e-05
d1r2ja2	210	e.6.1.1 (A:3-212) Protein FkbI {Streptomyces hygro	5e-05

>d1ivha2 e.6.1.1 (A:6-241) Isovaleryl-coa dehydrogenase, NM domains {Human (Homo sapiens) [TaxId: 9606]} Length = 236

class: Multi-domain proteins (alpha and beta)
fold: Acyl-CoA dehydrogenase NM domain-like
superfamily: Acyl-CoA dehydrogenase NM domain-like
family: Medium chain acyl-CoA dehydrogenase, NM (N-terminal and middle) domains
domain: Isovaleryl-coa dehydrogenase, NM domains
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  120 bits (301), Expect = 5e-34
 Identities = 48/163 (29%), Positives = 73/163 (44%), Gaps = 6/163 (3%)

Query: 52  DDL---LTSEEQAVRMKVRECMEKEIAPIMAEYWEKAEFPFH--VIPKLGALRVAGGTIK 106
           DD    L+ E++ +R  + + +++ +AP   E     EF        +LG L V G T  
Sbjct: 2   DDAINGLSEEQRQLRQTMAKFLQEHLAPKAQEIDRSNEFKNLREFWKQLGNLGVLGITAP 61

Query: 107 GYGCP-GHSVTGAAIAIAEIARVDASCSTFILVHSSLAMLTIALCGSEEQKQKYLPSLAQ 165
                 G       + + EI+R   +       HS+L +  +   G+E QK+KYLP L  
Sbjct: 62  VQYGGSGLGYLEHVLVMEEISRASGAVGLSYGAHSNLCINQLVRNGNEAQKEKYLPKLIS 121

Query: 166 LNTIACWALTEPAYGSDASALNTTATKVEGGWILEGQKRWIGN 208
              I   A++EP  GSD  ++   A K    +IL G K WI N
Sbjct: 122 GEYIGALAMSEPNAGSDVVSMKLKAEKKGNHYILNGNKFWITN 164

>d1ukwa2 e.6.1.1 (A:32-258) Medium chain acyl-CoA dehydrogenase, NM domains {Thermus thermophilus [TaxId: 274]} Length = 227

class: Multi-domain proteins (alpha and beta)
fold: Acyl-CoA dehydrogenase NM domain-like
superfamily: Acyl-CoA dehydrogenase NM domain-like
family: Medium chain acyl-CoA dehydrogenase, NM (N-terminal and middle) domains
domain: Medium chain acyl-CoA dehydrogenase, NM domains
species: Thermus thermophilus [TaxId: 274]

 Score =  100 bits (250), Expect = 1e-26
 Identities = 53/176 (30%), Positives = 84/176 (47%)

Query: 55  LTSEEQAVRMKVRECMEKEIAPIMAEYWEKAEFPFHVIPKLGALRVAGGTIKGYGCPGHS 114
           LT E++ ++   R   ++ I P+  EY EK E P+ VI KL  + +    I         
Sbjct: 5   LTEEQRQLQALARRFAKEVILPVAQEYDEKEEVPWPVIEKLHEVGLLNAIIPEEYGGMGL 64

Query: 115 VTGAAIAIAEIARVDASCSTFILVHSSLAMLTIALCGSEEQKQKYLPSLAQLNTIACWAL 174
                + + E           I + S L +  + L G+EEQK+++L  L +   +A +AL
Sbjct: 65  KMLDEVIVGEELAYACMGIYTIPMASDLGITPVLLAGTEEQKERFLRPLTEKPALAAFAL 124

Query: 175 TEPAYGSDASALNTTATKVEGGWILEGQKRWIGNSTFADVLVIFARNTTTNQINGY 230
           +EP  GSDA+AL T A +    ++L G K WI N   A+ +V+FA      +  G 
Sbjct: 125 SEPGNGSDAAALKTRAIRQGDHYVLNGTKMWISNGGEAEWVVVFATVNPELRHKGV 180

>d2d29a2 e.6.1.1 (A:2-234) Acyl-CoA dehydrogenase {Thermus thermophilus [TaxId: 274]} Length = 233

class: Multi-domain proteins (alpha and beta)
fold: Acyl-CoA dehydrogenase NM domain-like
superfamily: Acyl-CoA dehydrogenase NM domain-like
family: Medium chain acyl-CoA dehydrogenase, NM (N-terminal and middle) domains
domain: Acyl-CoA dehydrogenase
species: Thermus thermophilus [TaxId: 274]

 Score =  100 bits (248), Expect = 2e-26
 Identities = 57/160 (35%), Positives = 75/160 (46%), Gaps = 1/160 (0%)

Query: 55  LTSEEQAVRMKVRECMEKEIAPIMAEYWEKAEFPFHVIPKLGALRVAGGTIKGYGCPGHS 114
             +EE+ V    RE ++ E+AP  AE      FP+ ++ KL    V G  +         
Sbjct: 6   EGAEERQVLGPFREFLKAEVAPGAAERDRTGAFPWDLVRKLAEFGVFGALVPEAYGGAGL 65

Query: 115 VTGAAIAIAEIARVDASCSTFI-LVHSSLAMLTIALCGSEEQKQKYLPSLAQLNTIACWA 173
            T     + E               H+SLA   I L GSE QK+ +LP LA    +  W 
Sbjct: 66  STRLFARMVEAIAYYDGALALTVASHNSLATGHILLAGSEAQKEAFLPKLASGEALGAWG 125

Query: 174 LTEPAYGSDASALNTTATKVEGGWILEGQKRWIGNSTFAD 213
           LTEP  GSDA+AL T A KVEGGW L G K++I   + A 
Sbjct: 126 LTEPGSGSDAAALKTKAEKVEGGWRLNGTKQFITQGSVAG 165

>d1rx0a2 e.6.1.1 (A:10-240) Isobutyryl-CoA dehydrogenase {Human (Homo sapiens) [TaxId: 9606]} Length = 231

class: Multi-domain proteins (alpha and beta)
fold: Acyl-CoA dehydrogenase NM domain-like
superfamily: Acyl-CoA dehydrogenase NM domain-like
family: Medium chain acyl-CoA dehydrogenase, NM (N-terminal and middle) domains
domain: Isobutyryl-CoA dehydrogenase
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 99.2 bits (246), Expect = 5e-26
 Identities = 48/167 (28%), Positives = 77/167 (46%)

Query: 55  LTSEEQAVRMKVRECMEKEIAPIMAEYWEKAEFPFHVIPKLGALRVAGGTIKGYGCPGHS 114
           L  E++  +    +   +E+AP MAE+ +K  FP  V+ K   L   G  I+        
Sbjct: 10  LNEEQKEFQKVAFDFAAREMAPNMAEWDQKELFPVDVMRKAAQLGFGGVYIQTDVGGSGL 69

Query: 115 VTGAAIAIAEIARVDASCSTFILVHSSLAMLTIALCGSEEQKQKYLPSLAQLNTIACWAL 174
                  I E      + +T  +   ++    I   G+EEQ+ K+ P L  +   A + L
Sbjct: 70  SRLDTSVIFEALATGCTSTTAYISIHNMCAWMIDSFGNEEQRHKFCPPLCTMEKFASYCL 129

Query: 175 TEPAYGSDASALNTTATKVEGGWILEGQKRWIGNSTFADVLVIFARN 221
           TEP  GSDA++L T+A K    +IL G K +I  +  +D+ V+  R 
Sbjct: 130 TEPGSGSDAASLLTSAKKQGDHYILNGSKAFISGAGESDIYVVMCRT 176

>d3mdea2 e.6.1.1 (A:11-241) Medium chain acyl-CoA dehydrogenase, NM domains {Pig (Sus scrofa) [TaxId: 9823]} Length = 231

class: Multi-domain proteins (alpha and beta)
fold: Acyl-CoA dehydrogenase NM domain-like
superfamily: Acyl-CoA dehydrogenase NM domain-like
family: Medium chain acyl-CoA dehydrogenase, NM (N-terminal and middle) domains
domain: Medium chain acyl-CoA dehydrogenase, NM domains
species: Pig (Sus scrofa) [TaxId: 9823]

 Score = 96.2 bits (238), Expect = 6e-25
 Identities = 38/158 (24%), Positives = 71/158 (44%)

Query: 55  LTSEEQAVRMKVRECMEKEIAPIMAEYWEKAEFPFHVIPKLGALRVAGGTIKGYGCPGHS 114
           LT +++  +   R+   +EI P+ AEY    E+P  ++ +   L +    I         
Sbjct: 6   LTEQQKEFQATARKFAREEIIPVAAEYDRTGEYPVPLLKRAWELGLMNTHIPESFGGLGL 65

Query: 115 VTGAAIAIAEIARVDASCSTFILVHSSLAMLTIALCGSEEQKQKYLPSLAQLNTIACWAL 174
               +  I E      +     +  ++L  + + + G+ +Q++KYL  + +   +  + +
Sbjct: 66  GIIDSCLITEELAYGCTGVQTAIEANTLGQVPLIIGGNYQQQKKYLGRMTEEPLMCAYCV 125

Query: 175 TEPAYGSDASALNTTATKVEGGWILEGQKRWIGNSTFA 212
           TEP  GSD + + T A K    +I+ GQK WI N   A
Sbjct: 126 TEPGAGSDVAGIKTKAEKKGDEYIINGQKMWITNGGKA 163

>d1jqia2 e.6.1.1 (A:4-234) Butyryl-CoA dehydrogenase, NM domains {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 231

class: Multi-domain proteins (alpha and beta)
fold: Acyl-CoA dehydrogenase NM domain-like
superfamily: Acyl-CoA dehydrogenase NM domain-like
family: Medium chain acyl-CoA dehydrogenase, NM (N-terminal and middle) domains
domain: Butyryl-CoA dehydrogenase, NM domains
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 91.2 bits (225), Expect = 5e-23
 Identities = 60/176 (34%), Positives = 89/176 (50%), Gaps = 1/176 (0%)

Query: 55  LTSEEQAVRMKVRECMEKEIAPIMAEYWEKAEFPFHVIPKLGALRVAGGTIKG-YGCPGH 113
           L    Q +R   R+  EKE+ PI A+  ++  FP   + K+G L +    +       G 
Sbjct: 7   LPETHQMLRQTCRDFAEKELVPIAAQLDKEHLFPTSQVKKMGELGLLAMDVPEELSGAGL 66

Query: 114 SVTGAAIAIAEIARVDASCSTFILVHSSLAMLTIALCGSEEQKQKYLPSLAQLNTIACWA 173
                +IA+ EI+R  AS    + V++SL +  I   GS +QKQ+++      + I C+A
Sbjct: 67  DYLAYSIALEEISRGCASTGVIMSVNNSLYLGPILKFGSSQQKQQWITPFTNGDKIGCFA 126

Query: 174 LTEPAYGSDASALNTTATKVEGGWILEGQKRWIGNSTFADVLVIFARNTTTNQING 229
           L+EP  GSDA A +TTA +    W+L G K WI NS  A   V+FA    + Q  G
Sbjct: 127 LSEPGNGSDAGAASTTAREEGDSWVLNGTKAWITNSWEASATVVFASTDRSRQNKG 182

>d1siqa2 e.6.1.1 (A:3-238) Glutaryl-CoA dehydrogenase GCDH {Human (Homo sapiens) [TaxId: 9606]} Length = 236

class: Multi-domain proteins (alpha and beta)
fold: Acyl-CoA dehydrogenase NM domain-like
superfamily: Acyl-CoA dehydrogenase NM domain-like
family: Medium chain acyl-CoA dehydrogenase, NM (N-terminal and middle) domains
domain: Glutaryl-CoA dehydrogenase GCDH
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 86.2 bits (212), Expect = 4e-21
 Identities = 65/175 (37%), Positives = 92/175 (52%), Gaps = 2/175 (1%)

Query: 46  SDYYQFDDLLTSEEQAVRMKVRECMEKEIAPIMAEYWEKAEFPFHVIPKLGALRVAGGTI 105
            D    ++ LT++E  +R   R   ++ + P +        F   +I ++G L V G TI
Sbjct: 5   QDPLVLEEQLTTDEILIRDTFRTYCQERLMPRILLANRNEVFHREIISEMGELGVLGPTI 64

Query: 106 KGYGCPGHSVTGAAIAIAEIARVDASCSTFILVHSSLAMLTIALCGSEEQKQKYLPSLAQ 165
           KGYGC G S     +   E+ RVD+   + + V SSL M  I   GSEEQ+QKYLP LA+
Sbjct: 65  KGYGCAGVSSVAYGLLARELERVDSGYRSAMSVQSSLVMHPIYAYGSEEQRQKYLPQLAK 124

Query: 166 LNTIACWALTEPAYGSDASALNTTA--TKVEGGWILEGQKRWIGNSTFADVLVIF 218
              + C+ LTEP  GSD S++ T A        + L G K WI NS  AD+ V++
Sbjct: 125 GELLGCFGLTEPNSGSDPSSMETRAHYNSSNKSYTLNGTKTWITNSPMADLFVVW 179

>d1buca2 e.6.1.1 (A:1-232) Butyryl-CoA dehydrogenase, NM domains {Megasphaera elsdenii [TaxId: 907]} Length = 232

class: Multi-domain proteins (alpha and beta)
fold: Acyl-CoA dehydrogenase NM domain-like
superfamily: Acyl-CoA dehydrogenase NM domain-like
family: Medium chain acyl-CoA dehydrogenase, NM (N-terminal and middle) domains
domain: Butyryl-CoA dehydrogenase, NM domains
species: Megasphaera elsdenii [TaxId: 907]

 Score = 75.1 bits (183), Expect = 5e-17
 Identities = 55/180 (30%), Positives = 87/180 (48%), Gaps = 5/180 (2%)

Query: 55  LTSEEQAVRMKVRECMEKEIAPIMAEYWEKAEFPFHVIPKLGALRVAGGTIK----GYGC 110
           LT  +Q       +  EK++AP + E   K  +   +I +L +L + G   +    G G 
Sbjct: 5   LTDIQQDFLKLAHDFGEKKLAPTVTERDHKGIYDKELIDELLSLGITGAYFEEKYGGSGD 64

Query: 111 PGHSVTGAAIAIAEIARVDASCSTFILVHSSLAMLTIALCGSEEQKQKYLPSLAQLNTIA 170
            G  V    +A+ E+A+ DA  +  +    SL    I   G+E QK+K+L  L +   + 
Sbjct: 65  DGGDVLSYILAVEELAKYDAGVAITLSATVSLCANPIWQFGTEAQKEKFLVPLVEGTKLG 124

Query: 171 CWALTEPAYGSDASALNTTATKVEGG-WILEGQKRWIGNSTFADVLVIFARNTTTNQING 229
            + LTEP  G+DAS   T ATK + G + L G K +I N   AD+ ++FA    +   +G
Sbjct: 125 AFGLTEPNAGTDASGQQTIATKNDDGTYTLNGSKIFITNGGAADIYIVFAMTDKSKGNHG 184

>d1w07a3 e.6.1.2 (A:2-272) Acyl-coenzyme A oxidase 1, domains 1 and 2 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} Length = 271

class: Multi-domain proteins (alpha and beta)
fold: Acyl-CoA dehydrogenase NM domain-like
superfamily: Acyl-CoA dehydrogenase NM domain-like
family: acyl-CoA oxidase N-terminal domains
domain: Acyl-coenzyme A oxidase 1, domains 1 and 2
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

 Score = 60.1 bits (145), Expect = 2e-11
 Identities = 29/113 (25%), Positives = 47/113 (41%), Gaps = 8/113 (7%)

Query: 125 IARVDASCSTFILVHSSLAMLTIALCGSEEQKQKYLPSLAQLNTIACWALTEPAYGSDAS 184
             R       ++ +H  + +  I   G+EEQ++K+L    ++  I C+A TE  +GS+  
Sbjct: 87  RLRHFIDQPAYVDLHWGMFVPAIKGQGTEEQQKKWLSLANKMQIIGCYAQTELGHGSNVQ 146

Query: 185 ALNTTATKVEGG-------WILEGQKRWIGNST-FADVLVIFARNTTTNQING 229
            L TTAT                  K W G     +   V++AR  T  +  G
Sbjct: 147 GLETTATLDPKTDEFVIHTPTQTASKWWPGGLGKVSTHAVVYARLITNGKDYG 199

>d2ddha3 e.6.1.2 (A:1-267) Peroxisomal acyl-CoA oxidase-II, domains 1 and 2 {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 267

class: Multi-domain proteins (alpha and beta)
fold: Acyl-CoA dehydrogenase NM domain-like
superfamily: Acyl-CoA dehydrogenase NM domain-like
family: acyl-CoA oxidase N-terminal domains
domain: Peroxisomal acyl-CoA oxidase-II, domains 1 and 2
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 53.6 bits (128), Expect = 3e-09
 Identities = 30/189 (15%), Positives = 63/189 (33%), Gaps = 23/189 (12%)

Query: 54  LLTSEEQA-VRMKVRECMEKEIAPIMA----EYWEKAEFPFHVIPKLGALRVAGGTIKGY 108
           L  S E    R ++   +  +  P        +  +++     + K   +      +K  
Sbjct: 23  LDGSPENTRRRREIENLILND--PDFQHEDYNFLTRSQRYEVAVKKSATM------VKKM 74

Query: 109 GCPGHSVTGAAIAIAEIARVDASCSTFILVHSSLAMLTIALCGSEEQKQKYLPSLAQLNT 168
              G S     +       V       + +H  + + T+    + EQ++++      L  
Sbjct: 75  REYGISDPEEIMWFKN--SVHRGHPEPLDLHLGMFLPTLLHQATAEQQERFFMPAWNLEI 132

Query: 169 IACWALTEPAYGSDASALNTTATK-------VEGGWILEGQKRWIGN-STFADVLVIFAR 220
              +A TE  +G+    L TTAT        +     +   K W G     ++  ++ A+
Sbjct: 133 TGTYAQTEMGHGTHLRGLETTATYDPKTQEFILNSPTVTSIKWWPGGLGKTSNHAIVLAQ 192

Query: 221 NTTTNQING 229
             T  +  G
Sbjct: 193 LITQGECYG 201

>d1u8va2 e.6.1.1 (A:1-275) 4-hydroxybutyryl-CoA dehydratase AbfD, NM domains {Clostridium aminobutyricum [TaxId: 33953]} Length = 275

class: Multi-domain proteins (alpha and beta)
fold: Acyl-CoA dehydrogenase NM domain-like
superfamily: Acyl-CoA dehydrogenase NM domain-like
family: Medium chain acyl-CoA dehydrogenase, NM (N-terminal and middle) domains
domain: 4-hydroxybutyryl-CoA dehydratase AbfD, NM domains
species: Clostridium aminobutyricum [TaxId: 33953]

 Score = 45.8 bits (108), Expect = 2e-06
 Identities = 20/127 (15%), Positives = 38/127 (29%), Gaps = 16/127 (12%)

Query: 121 AIAEIARVDASCSTFILVHSSLAMLTI------ALCGSE--EQKQKYLPSLAQLNTIACW 172
               + +  ASC    +   +   +           G+   +   +YL  + + + I   
Sbjct: 88  MQRLLGQKTASCFQRCVGMDAFNAVFSTTYEIDQKYGTNYHKNFTEYLKYIQENDLIVDG 147

Query: 173 ALTEPAYGSDASA--------LNTTATKVEGGWILEGQKRWIGNSTFADVLVIFARNTTT 224
           A+T+P      +               K E G ++ G K     S  +   +I      T
Sbjct: 148 AMTDPKGDRGLAPSAQKDPDLFLRIVEKREDGIVVRGAKAHQTGSINSHEHIIMPTIAMT 207

Query: 225 NQINGYA 231
                YA
Sbjct: 208 EADKDYA 214

>d2c12a2 e.6.1.1 (A:2-260) Nitroalkane oxidase {Fusarium oxysporum [TaxId: 5507]} Length = 259

class: Multi-domain proteins (alpha and beta)
fold: Acyl-CoA dehydrogenase NM domain-like
superfamily: Acyl-CoA dehydrogenase NM domain-like
family: Medium chain acyl-CoA dehydrogenase, NM (N-terminal and middle) domains
domain: Nitroalkane oxidase
species: Fusarium oxysporum [TaxId: 5507]

 Score = 42.9 bits (99), Expect = 1e-05
 Identities = 30/172 (17%), Positives = 56/172 (32%), Gaps = 13/172 (7%)

Query: 55  LTSEEQAVRMKVRECMEKEIAPIMAEYW------EKAEFPFHVIPKLGALRVAGGTI-KG 107
           L+  +   R   +      +    AEY        + +       +     +    +   
Sbjct: 5   LSPSQLEARRHAQAFANTVLTKASAEYSTQKDQLSRFQATRPFYREAVRHGLIKAQVPIP 64

Query: 108 YGCPGHSVTGAAIAIAEIA-RVDASCSTFILVHSSLAMLTIALCGSEEQKQKYLPSLAQL 166
            G    S+   +I + E+     A+  T +     L  + +    S ++K        + 
Sbjct: 65  LGGTMESLVHESIILEELFAVEPATSITIVATALGLMPVILCDSPSLQEKFLKPFISGEG 124

Query: 167 NTIACWALTEPAYGS-----DASALNTTATKVEGGWILEGQKRWIGNSTFAD 213
             +A    +EP   +         L TTA KV   W++ G+K W  NS   D
Sbjct: 125 EPLASLMHSEPNGTANWLQKGGPGLQTTARKVGNEWVISGEKLWPSNSGGWD 176

>d1r2ja2 e.6.1.1 (A:3-212) Protein FkbI {Streptomyces hygroscopicus [TaxId: 1912]} Length = 210

class: Multi-domain proteins (alpha and beta)
fold: Acyl-CoA dehydrogenase NM domain-like
superfamily: Acyl-CoA dehydrogenase NM domain-like
family: Medium chain acyl-CoA dehydrogenase, NM (N-terminal and middle) domains
domain: Protein FkbI
species: Streptomyces hygroscopicus [TaxId: 1912]

 Score = 40.5 bits (93), Expect = 5e-05
 Identities = 23/138 (16%), Positives = 47/138 (34%), Gaps = 3/138 (2%)

Query: 70  MEKEIAPIMAEYWEKAEFPFHVIPKLGALRVAGGTI-KGYGCPGHSVTGAAIAIAEIARV 128
           +   +    AE+    E P  ++ +LGA  +    +   +G  G          A +  +
Sbjct: 6   LTDLVGDRAAEWDTSGELPRDLLVRLGADGLLCAEVAAEHGGLGLGSRENGEFTAHVGSL 65

Query: 129 DASCSTFILVHSSLAMLTIALCGSEEQKQKYLPSLAQLNTIACWALTEPAYGSDASALNT 188
            +S  + +      A     L  + ++        +       +  +E   GSD SA+ T
Sbjct: 66  CSSLRSVMTSQGMAAWTVQRLGDAGQRATFLKELTSGKLAAVGF--SERQAGSDLSAMRT 123

Query: 189 TATKVEGGWILEGQKRWI 206
                    +++G K W 
Sbjct: 124 RVRLDGDTAVVDGHKVWT 141

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	240
d3mdea2	231	Medium chain acyl-CoA dehydrogenase, NM domains {P	100.0
d1ukwa2	227	Medium chain acyl-CoA dehydrogenase, NM domains {T	100.0
d2d29a2	233	Acyl-CoA dehydrogenase {Thermus thermophilus [TaxI	100.0
d1jqia2	231	Butyryl-CoA dehydrogenase, NM domains {Rat (Rattus	100.0
d1siqa2	236	Glutaryl-CoA dehydrogenase GCDH {Human (Homo sapie	100.0
d1ivha2	236	Isovaleryl-coa dehydrogenase, NM domains {Human (H	100.0
d2c12a2	259	Nitroalkane oxidase {Fusarium oxysporum [TaxId: 55	100.0
d1rx0a2	231	Isobutyryl-CoA dehydrogenase {Human (Homo sapiens)	100.0
d1buca2	232	Butyryl-CoA dehydrogenase, NM domains {Megasphaera	100.0
d1r2ja2	210	Protein FkbI {Streptomyces hygroscopicus [TaxId: 1	100.0
d2ddha3	267	Peroxisomal acyl-CoA oxidase-II, domains 1 and 2 {	99.91
d1w07a3	271	Acyl-coenzyme A oxidase 1, domains 1 and 2 {Thale	99.89
d1u8va2	275	4-hydroxybutyryl-CoA dehydratase AbfD, NM domains	99.55

>d3mdea2 e.6.1.1 (A:11-241) Medium chain acyl-CoA dehydrogenase, NM domains {Pig (Sus scrofa) [TaxId: 9823]}

class: Multi-domain proteins (alpha and beta)
fold: Acyl-CoA dehydrogenase NM domain-like
superfamily: Acyl-CoA dehydrogenase NM domain-like
family: Medium chain acyl-CoA dehydrogenase, NM (N-terminal and middle) domains
domain: Medium chain acyl-CoA dehydrogenase, NM domains
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=100.00  E-value=3.5e-42  Score=280.28  Aligned_cols=185  Identities=24%  Similarity=0.415  Sum_probs=173.6

Q ss_pred             CCCCCCHHHHHHHHHHHHHHHhhccccHHHHHHhCCCCHHHHHHHHhcCcCCC-ccccCCCCCCCHHHHHHHHHHHHccC
Q 026317           51 FDDLLTSEEQAVRMKVRECMEKEIAPIMAEYWEKAEFPFHVIPKLGALRVAGG-TIKGYGCPGHSVTGAAIAIAEIARVD  129 (240)
Q Consensus        51 m~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~l~~~Gl~~l-~p~~~GG~g~~~~~~~~v~e~la~~~  129 (240)
                      |||.||++++++++.+|+|+++++.|.+.++|+++.+|+++|+++++.||+++ +|++|||.|.+....+.+.|++++++
T Consensus         2 mdf~lseeq~~l~~~~r~f~~~~~~p~a~~~d~~~~~p~~~~~~l~~~Gl~~~~vP~~~GG~g~~~~~~~~~~e~l~~~~   81 (231)
T d3mdea2           2 FSFELTEQQKEFQATARKFAREEIIPVAAEYDRTGEYPVPLLKRAWELGLMNTHIPESFGGLGLGIIDSCLITEELAYGC   81 (231)
T ss_dssp             CCCCCCHHHHHHHHHHHHHHHHTTHHHHHHHHHHCCCCHHHHHHHHHHTCSSTTSCGGGTCCCCCHHHHHHHHHHHHHHC
T ss_pred             CCCCCCHHHHHHHHHHHHHHHHhCchhHHHHHHcCCCCHHHHHHHHHhhhccccccccccCccccccccccchhhhcccc
Confidence            89999999999999999999999999999999999999999999999999999 99999999999999999999999999


Q ss_pred             CcchHHHHhhhhHHHHHHhccCCHHHHHhhchhhhcCCceEEEEeeCCCCCCCcCCCceEEEEeCCEEEEeeeEeeecCC
Q 026317          130 ASCSTFILVHSSLAMLTIALCGSEEQKQKYLPSLAQLNTIACWALTEPAYGSDASALNTTATKVEGGWILEGQKRWIGNS  209 (240)
Q Consensus       130 ~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~l~~l~~G~~~~~~a~tEp~~Gsd~~~~~t~a~~~~~g~~LnG~K~~vs~~  209 (240)
                      .+.++++..+. .+...|..+|+++||++|+|++++|+.++|+|+|||++|||+.+++|+|++++|||+|||+|+||||+
T Consensus        82 ~~~~~~~~~~~-~~~~~l~~~g~~~qk~~~l~~l~~g~~~~~~a~tEp~~Gsd~~~~~t~a~~~~~g~~lnG~K~~vt~~  160 (231)
T d3mdea2          82 TGVQTAIEANT-LGQVPLIIGGNYQQQKKYLGRMTEEPLMCAYCVTEPGAGSDVAGIKTKAEKKGDEYIINGQKMWITNG  160 (231)
T ss_dssp             HHHHHHHHHHH-HHHHHHHHHCCHHHHHHHHHHHTTSCCEEEEECCBTTBSSCGGGCCCEEEEETTEEEEEEEEEEEETT
T ss_pred             ccccccccccc-ccchhhhhcCcccccccccchhcCCceEEEEEecCCCCCCCccCCEEEEEEECCEEEEEEEEEEeCCc
Confidence            98887766553 56678889999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCCCEEEEEEEeCCCC------CeeEEEEeCCc
Q 026317          210 TFADVLVIFARNTTTN------QINGYANQSIK  236 (240)
Q Consensus       210 ~~Ad~~~v~a~~~~~~------~~~~flVp~~~  236 (240)
                      ..||+++++|+++.++      ++++|+||+++
T Consensus       161 ~~a~~~~~~a~t~~~~~~~~~~~~~~~lv~~d~  193 (231)
T d3mdea2         161 GKANWYFLLARSDPDPKAPASKAFTGFIVEADT  193 (231)
T ss_dssp             TTEEEEEEEEECCCCTTSCHHHHEEEEEEETTS
T ss_pred             hhccccceecccccccccccccceEEEEEeCCC
Confidence            9999999999985432      48999999986

>d1ukwa2 e.6.1.1 (A:32-258) Medium chain acyl-CoA dehydrogenase, NM domains {Thermus thermophilus [TaxId: 274]}

class: Multi-domain proteins (alpha and beta)
fold: Acyl-CoA dehydrogenase NM domain-like
superfamily: Acyl-CoA dehydrogenase NM domain-like
family: Medium chain acyl-CoA dehydrogenase, NM (N-terminal and middle) domains
domain: Medium chain acyl-CoA dehydrogenase, NM domains
species: Thermus thermophilus [TaxId: 274]

Probab=100.00  E-value=7e-42  Score=278.17  Aligned_cols=185  Identities=30%  Similarity=0.444  Sum_probs=173.1

Q ss_pred             CCCCCCHHHHHHHHHHHHHHHhhccccHHHHHHhCCCCHHHHHHHHhcCcCCC-ccccCCCCCCCHHHHHHHHHHHHccC
Q 026317           51 FDDLLTSEEQAVRMKVRECMEKEIAPIMAEYWEKAEFPFHVIPKLGALRVAGG-TIKGYGCPGHSVTGAAIAIAEIARVD  129 (240)
Q Consensus        51 m~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~l~~~Gl~~l-~p~~~GG~g~~~~~~~~v~e~la~~~  129 (240)
                      |||.||+|++++++.+|+|+++++.|.+.++|+.+.+|+++|++|+++||+++ +|++|||.|.++.+++.++|++++++
T Consensus         1 Mdf~Lteeq~~l~~~~r~f~~~~~~p~a~~~d~~~~~p~~~~~~l~~~G~~~~~~P~~~GG~g~~~~~~~~v~e~~~~~~   80 (227)
T d1ukwa2           1 IDFSLTEEQRQLQALARRFAKEVILPVAQEYDEKEEVPWPVIEKLHEVGLLNAIIPEEYGGMGLKMLDEVIVGEELAYAC   80 (227)
T ss_dssp             CBCCCCHHHHHHHHHHHHHHHHTTGGGHHHHHHHTCCCHHHHHHHHHTTCTTTTSCGGGTSCCCCHHHHHHHHHHHHHHC
T ss_pred             CcCCCCHHHHHHHHHHHHHHHHhChHHHHHHHhcCCCCHHHHHHHHhhhhhhhccccccCcccccccccccchhhhcccc
Confidence            78999999999999999999999999999999999999999999999999999 99999999999999999999999999


Q ss_pred             CcchHHHHhhhhHHHHHHhccCCHHHHHhhchhhhcCCceEEEEeeCCCCCCCcCCCceEEEEeCCEEEEeeeEeeecCC
Q 026317          130 ASCSTFILVHSSLAMLTIALCGSEEQKQKYLPSLAQLNTIACWALTEPAYGSDASALNTTATKVEGGWILEGQKRWIGNS  209 (240)
Q Consensus       130 ~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~l~~l~~G~~~~~~a~tEp~~Gsd~~~~~t~a~~~~~g~~LnG~K~~vs~~  209 (240)
                      .+.+.+...+ ..+...+..+|+++||++|++++++|+.++|+++|||++|||+..++|+|++++|||+|||+|.||||+
T Consensus        81 ~~~~~~~~~~-~~~~~~i~~~g~~~qk~~~l~~~~~g~~~~~~a~tE~~~gsd~~~~~t~a~~~~~g~~lnG~K~~vs~~  159 (227)
T d1ukwa2          81 MGIYTIPMAS-DLGITPVLLAGTEEQKERFLRPLTEKPALAAFALSEPGNGSDAAALKTRAIRQGDHYVLNGTKMWISNG  159 (227)
T ss_dssp             HHHHHHHHHH-HHHHHHHHHHCCHHHHHHHHGGGTSSSCEEEEECCBTTBSSCGGGCCCEEEEETTEEEEEEEEEEEETT
T ss_pred             cccccccccc-ccchhhhhccCCHHHHHHhccccccccccccccccCCCcCcCCcCceEEEEEECCEEEEEeEEeccCcc
Confidence            8877765554 456678889999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCCCEEEEEEEeCCC---CCeeEEEEeCCc
Q 026317          210 TFADVLVIFARNTTT---NQINGYANQSIK  236 (240)
Q Consensus       210 ~~Ad~~~v~a~~~~~---~~~~~flVp~~~  236 (240)
                      ..||+++|.|+++++   .++++|+||+++
T Consensus       160 ~~Ad~~~v~a~~~~~~~~~g~~~f~V~~~~  189 (227)
T d1ukwa2         160 GEAEWVVVFATVNPELRHKGVVALVVERGT  189 (227)
T ss_dssp             TTEEEEEEEEESCGGGGGGGEEEEEEETTC
T ss_pred             ccchhhccccccCCccCcCCcEEEEEeCCC
Confidence            999999999998643   468999999876

>d2d29a2 e.6.1.1 (A:2-234) Acyl-CoA dehydrogenase {Thermus thermophilus [TaxId: 274]}

class: Multi-domain proteins (alpha and beta)
fold: Acyl-CoA dehydrogenase NM domain-like
superfamily: Acyl-CoA dehydrogenase NM domain-like
family: Medium chain acyl-CoA dehydrogenase, NM (N-terminal and middle) domains
domain: Acyl-CoA dehydrogenase
species: Thermus thermophilus [TaxId: 274]

Probab=100.00  E-value=1.5e-41  Score=277.41  Aligned_cols=186  Identities=37%  Similarity=0.511  Sum_probs=176.0

Q ss_pred             CCCCCCHHHHHHHHHHHHHHHhhccccHHHHHHhCCCCHHHHHHHHhcCcCCC-ccccCCCCCCCHHHHHHHHHHHHccC
Q 026317           51 FDDLLTSEEQAVRMKVRECMEKEIAPIMAEYWEKAEFPFHVIPKLGALRVAGG-TIKGYGCPGHSVTGAAIAIAEIARVD  129 (240)
Q Consensus        51 m~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~l~~~Gl~~l-~p~~~GG~g~~~~~~~~v~e~la~~~  129 (240)
                      |.|.|+++++++++++|+|+++++.|.+.++|+++.+|.++|++|++.||+++ +|++|||.|++..+++.+.+++++.+
T Consensus         2 ~~F~l~~e~~~l~~~~r~f~~~~i~p~a~e~d~~~~~p~~~~~~l~~~Gl~~~~~P~~~GG~g~~~~~~~~v~~~~~~~~   81 (233)
T d2d29a2           2 LWFEEGAEERQVLGPFREFLKAEVAPGAAERDRTGAFPWDLVRKLAEFGVFGALVPEAYGGAGLSTRLFARMVEAIAYYD   81 (233)
T ss_dssp             CTTSCCHHHHHHHHHHHHHHHHHTGGGHHHHHHHCCCCHHHHHHHHTTTGGGSSSCGGGTCCCCCHHHHHHHHHHHHHHC
T ss_pred             CCCCCCHHHHHHHHHHHHHHHHhCcccHHHHHHhCCCCHHHHHHHHHhccccccccccccccccchhhhccccccccccc
Confidence            67889999999999999999999999999999999999999999999999999 99999999999999999999999999


Q ss_pred             CcchHHHHhhhhHHHHHHhccCCHHHHHhhchhhhcCCceEEEEeeCCCCCCCcCCCceEEEEeCCEEEEeeeEeeecCC
Q 026317          130 ASCSTFILVHSSLAMLTIALCGSEEQKQKYLPSLAQLNTIACWALTEPAYGSDASALNTTATKVEGGWILEGQKRWIGNS  209 (240)
Q Consensus       130 ~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~l~~l~~G~~~~~~a~tEp~~Gsd~~~~~t~a~~~~~g~~LnG~K~~vs~~  209 (240)
                      .+.++.+.+|.......+..+|+++||++|||++++|+.++|+|+|||++|||+..++|+|++++|+|+|||+|+||||+
T Consensus        82 ~~~~~~~~~~~~~~~~~l~~~g~~~qk~~~l~~l~~G~~~~~~a~tEp~~gsd~~~~~t~a~~~~~~~~lnG~K~~vs~~  161 (233)
T d2d29a2          82 GALALTVASHNSLATGHILLAGSEAQKEAFLPKLASGEALGAWGLTEPGSGSDAAALKTKAEKVEGGWRLNGTKQFITQG  161 (233)
T ss_dssp             HHHHHHHHHHHHTHHHHHHHHCCHHHHHHHHHHHHTSSSCEEEECCBTTBSSSGGGCCCEEEEETTEEEEEEEEEEEETT
T ss_pred             cccccccccccccchHHHHHhChHHHHHhhCccccCCCEEEEEEecCCCCCCcccceeEEEEEECCEEEEecceeccccc
Confidence            99888888876666778899999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCCCEEEEEEEeCCC-------CCeeEEEEeCCc
Q 026317          210 TFADVLVIFARNTTT-------NQINGYANQSIK  236 (240)
Q Consensus       210 ~~Ad~~~v~a~~~~~-------~~~~~flVp~~~  236 (240)
                      ..||+++|+|++.++       .++++|+||+++
T Consensus       162 ~~a~~~~v~a~~~~~~~~~~~~~g~~~~lv~~~~  195 (233)
T d2d29a2         162 SVAGVYVVMARTDPPPSPERKHQGISAFAFFRPE  195 (233)
T ss_dssp             TTCSEEEEEEECSCCSCGGGTTTTEEEEEEECCS
T ss_pred             cccccccccccccCCccccccccCceEEEEEcCC
Confidence            999999999998543       358999999886

>d1jqia2 e.6.1.1 (A:4-234) Butyryl-CoA dehydrogenase, NM domains {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Multi-domain proteins (alpha and beta)
fold: Acyl-CoA dehydrogenase NM domain-like
superfamily: Acyl-CoA dehydrogenase NM domain-like
family: Medium chain acyl-CoA dehydrogenase, NM (N-terminal and middle) domains
domain: Butyryl-CoA dehydrogenase, NM domains
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=100.00  E-value=2.9e-41  Score=275.39  Aligned_cols=187  Identities=32%  Similarity=0.440  Sum_probs=175.3

Q ss_pred             cCCCCCCHHHHHHHHHHHHHHHhhccccHHHHHHhCCCCHHHHHHHHhcCcCCC-ccccCCCCCCCHHHHHHHHHHHHcc
Q 026317           50 QFDDLLTSEEQAVRMKVRECMEKEIAPIMAEYWEKAEFPFHVIPKLGALRVAGG-TIKGYGCPGHSVTGAAIAIAEIARV  128 (240)
Q Consensus        50 ~m~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~l~~~Gl~~l-~p~~~GG~g~~~~~~~~v~e~la~~  128 (240)
                      -|++.||+|++++++++|+|+++++.|.+.++|+.+.+|.+.|++|+++||+++ +|++|||.|++..+.+.++|++++.
T Consensus         2 ~~~~~L~ee~~~l~~~~r~f~~~~i~p~a~~~d~~~~~p~e~~~~l~~~Gl~~~~~p~~~GG~g~~~~~~~~~~ee~~~~   81 (231)
T d1jqia2           2 YQSVELPETHQMLRQTCRDFAEKELVPIAAQLDKEHLFPTSQVKKMGELGLLAMDVPEELSGAGLDYLAYSIALEEISRG   81 (231)
T ss_dssp             CCCSCCCHHHHHHHHHHHHHHHHHTTTTHHHHHHHTCCCHHHHHHHHHHTTTSSSSCGGGTCCCCCHHHHHHHHHHHHHH
T ss_pred             CCCCCCCHHHHHHHHHHHHHHHHhChHHHHHHHhcCCCCHHHHHHHHHhCCcccccccccCCCchhHHHHHHHHHHHHhh
Confidence            377889999999999999999999999999999999999999999999999999 9999999999999999999999999


Q ss_pred             CCcchHHHHhhhhHHHHHHhccCCHHHHHhhchhhhcCCceEEEEeeCCCCCCCcCCCceEEEEeCCEEEEeeeEeeecC
Q 026317          129 DASCSTFILVHSSLAMLTIALCGSEEQKQKYLPSLAQLNTIACWALTEPAYGSDASALNTTATKVEGGWILEGQKRWIGN  208 (240)
Q Consensus       129 ~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~l~~l~~G~~~~~~a~tEp~~Gsd~~~~~t~a~~~~~g~~LnG~K~~vs~  208 (240)
                      +.+.+....++.......+..+|+++||++|||++++|+.++|+++|||++|||...++|+|++++|+|+|||+|.||||
T Consensus        82 ~~~~~~~~~~~~~~~~~~l~~~g~~~qk~~~l~~~~~g~~~~~~a~tEp~~gsd~~~~~t~a~~~~~~~~lnG~K~~vt~  161 (231)
T d1jqia2          82 CASTGVIMSVNNSLYLGPILKFGSSQQKQQWITPFTNGDKIGCFALSEPGNGSDAGAASTTAREEGDSWVLNGTKAWITN  161 (231)
T ss_dssp             CHHHHHHHHHHHHTTHHHHHHHCCHHHHHHHTGGGSSSSCCEEEECCBTTBSSSTTCCCCEEEECSSEEEEEEEEEEEET
T ss_pred             ccccccceeeeccchhhhhhhcCCHHHHHHHhCcccCCCccccceeccCCCCccCcccceEEEEECCEEEEeeeeeeEee
Confidence            98888777777666778899999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCCCCEEEEEEEeCCC---CCeeEEEEeCCc
Q 026317          209 STFADVLVIFARNTTT---NQINGYANQSIK  236 (240)
Q Consensus       209 ~~~Ad~~~v~a~~~~~---~~~~~flVp~~~  236 (240)
                      +..||++++.|++++.   .++++|+||+++
T Consensus       162 ~~~a~~~~v~a~~~~~~~~~g~~~~~Vp~~~  192 (231)
T d1jqia2         162 SWEASATVVFASTDRSRQNKGISAFLVPMPT  192 (231)
T ss_dssp             TTTCSEEEEEEESCGGGGGGSEEEEEEESSC
T ss_pred             cccccccccccccccccccCCceEEEEeCCC
Confidence            9999999999997533   468999999876

>d1siqa2 e.6.1.1 (A:3-238) Glutaryl-CoA dehydrogenase GCDH {Human (Homo sapiens) [TaxId: 9606]}

class: Multi-domain proteins (alpha and beta)
fold: Acyl-CoA dehydrogenase NM domain-like
superfamily: Acyl-CoA dehydrogenase NM domain-like
family: Medium chain acyl-CoA dehydrogenase, NM (N-terminal and middle) domains
domain: Glutaryl-CoA dehydrogenase GCDH
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=2.1e-40  Score=271.06  Aligned_cols=189  Identities=37%  Similarity=0.576  Sum_probs=174.3

Q ss_pred             CcccCCCCCCHHHHHHHHHHHHHHHhhccccHHHHHHhCCCCHHHHHHHHhcCcCCCccccCCCCCCCHHHHHHHHHHHH
Q 026317           47 DYYQFDDLLTSEEQAVRMKVRECMEKEIAPIMAEYWEKAEFPFHVIPKLGALRVAGGTIKGYGCPGHSVTGAAIAIAEIA  126 (240)
Q Consensus        47 ~~~~m~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~l~~~Gl~~l~p~~~GG~g~~~~~~~~v~e~la  126 (240)
                      |.+.|++.||+||+++++++|+|+++++.|.+.+.|+++.+|.++|+++.+.|++++.++++||.|.+....+.++++++
T Consensus         6 d~~~~d~~Lteeq~~l~d~~r~f~~~~i~p~~~~~d~~~~~p~~~~~~~~~~g~~~~~i~~~gg~g~~~~~~~~~~e~~~   85 (236)
T d1siqa2           6 DPLVLEEQLTTDEILIRDTFRTYCQERLMPRILLANRNEVFHREIISEMGELGVLGPTIKGYGCAGVSSVAYGLLARELE   85 (236)
T ss_dssp             STTCGGGGSCHHHHHHHHHHHHHHHHHTHHHHHHHHHHTCCCTHHHHHHHHTTCSSTTCEETTEECCCHHHHHHHHHHHH
T ss_pred             CcccccccCCHHHHHHHHHHHHHHHhhCChhHHHHHhcCCCCHHHHHHhhhhhcccccccccccCCcCHHHHHHHHHhhh
Confidence            56779999999999999999999999999999999999999999999999999999944678999999999999999999


Q ss_pred             ccCCcchHHHHhhhhHHHHHHhccCCHHHHHhhchhhhcCCceEEEEeeCCCCCCCcCCCceEE--EEeCCEEEEeeeEe
Q 026317          127 RVDASCSTFILVHSSLAMLTIALCGSEEQKQKYLPSLAQLNTIACWALTEPAYGSDASALNTTA--TKVEGGWILEGQKR  204 (240)
Q Consensus       127 ~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~l~~l~~G~~~~~~a~tEp~~Gsd~~~~~t~a--~~~~~g~~LnG~K~  204 (240)
                      +.+.+.+..+.++..++...+..+|+++||++|||++++|+.++|+|+|||++|||...+.|++  ++++++|+|||+|+
T Consensus        86 ~~~~~~~~~~~~~~~~~~~~l~~~g~~~qk~~~L~~l~~G~~~~~~a~tEp~~gsd~~~~~t~a~~~~~~~~~vlnG~K~  165 (236)
T d1siqa2          86 RVDSGYRSAMSVQSSLVMHPIYAYGSEEQRQKYLPQLAKGELLGCFGLTEPNSGSDPSSMETRAHYNSSNKSYTLNGTKT  165 (236)
T ss_dssp             TTCHHHHHHHHHHHHTTHHHHHHHSCHHHHHHHHHHHHTTSSCEEEECCBTTBSSCGGGCCCEEEEETTTTEEEEEEEEE
T ss_pred             ccccccccccccccccchhhhhhhcCHHHHHHhcCccCCCCEEecccCcCCCcccccccccccccccccccceEeccccc
Confidence            9998887777767666778899999999999999999999999999999999999999998877  66788899999999


Q ss_pred             eecCCCCCCEEEEEEEeCCCCCeeEEEEeCCc
Q 026317          205 WIGNSTFADVLVIFARNTTTNQINGYANQSIK  236 (240)
Q Consensus       205 ~vs~~~~Ad~~~v~a~~~~~~~~~~flVp~~~  236 (240)
                      ||||+..||+++|+|+++ ++++++|+||++.
T Consensus       166 ~vt~a~~Ad~~~V~art~-~~~~~~flV~~~~  196 (236)
T d1siqa2         166 WITNSPMADLFVVWARCE-DGCIRGFLLEKGM  196 (236)
T ss_dssp             EEETGGGCSEEEEEEEET-TSCEEEEEEETTC
T ss_pred             cEecCCCceEEEEEeccc-CCcceEEeecCCC
Confidence            999999999999999996 4578999999874

>d1ivha2 e.6.1.1 (A:6-241) Isovaleryl-coa dehydrogenase, NM domains {Human (Homo sapiens) [TaxId: 9606]}

class: Multi-domain proteins (alpha and beta)
fold: Acyl-CoA dehydrogenase NM domain-like
superfamily: Acyl-CoA dehydrogenase NM domain-like
family: Medium chain acyl-CoA dehydrogenase, NM (N-terminal and middle) domains
domain: Isovaleryl-coa dehydrogenase, NM domains
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=5.5e-40  Score=268.60  Aligned_cols=183  Identities=29%  Similarity=0.427  Sum_probs=171.1

Q ss_pred             CCCHHHHHHHHHHHHHHHhhccccHHHHHHhCCCC--HHHHHHHHhcCcCCC-ccccCCCCCCCHHHHHHHHHHHHccCC
Q 026317           54 LLTSEEQAVRMKVRECMEKEIAPIMAEYWEKAEFP--FHVIPKLGALRVAGG-TIKGYGCPGHSVTGAAIAIAEIARVDA  130 (240)
Q Consensus        54 ~l~~~~~~l~~~~~~~~~~~~~~~~~~~d~~~~~~--~~~~~~l~~~Gl~~l-~p~~~GG~g~~~~~~~~v~e~la~~~~  130 (240)
                      .||+||+++++.+++|+++++.|.+.+.|+.+.+|  +++|+++.++||+++ +|+++||.|+++.+.+.+.|+++++|+
T Consensus         7 ~Lseeq~~l~d~~~~f~~~~~~p~~~~~d~~~~~~~~~e~~~~l~~~G~~~~~~p~~~GG~g~~~~~~~~v~e~l~~~~~   86 (236)
T d1ivha2           7 GLSEEQRQLRQTMAKFLQEHLAPKAQEIDRSNEFKNLREFWKQLGNLGVLGITAPVQYGGSGLGYLEHVLVMEEISRASG   86 (236)
T ss_dssp             TCCHHHHHHHHHHHHHHHHHTTTTHHHHHHHTCCTTHHHHHHHHHHHTCTTTTSCGGGTCCCCCHHHHHHHHHHHHHHCH
T ss_pred             CCCHHHHHHHHHHHHHHHHhCChhHHHHHhhCCCccHHHHHHHHHHhhhccccccccccccCcccchhhhhhhhhhhhhh
Confidence            59999999999999999999999999999988887  589999999999999 999999999999999999999999999


Q ss_pred             cchHHHHhhhhHHHHHHhccCCHHHHHhhchhhhcCCceEEEEeeCCCCCCCcCCCceEEEEeCCEEEEeeeEeeecCCC
Q 026317          131 SCSTFILVHSSLAMLTIALCGSEEQKQKYLPSLAQLNTIACWALTEPAYGSDASALNTTATKVEGGWILEGQKRWIGNST  210 (240)
Q Consensus       131 ~~~~~~~~~~~~~~~~l~~~g~~~~~~~~l~~l~~G~~~~~~a~tEp~~Gsd~~~~~t~a~~~~~g~~LnG~K~~vs~~~  210 (240)
                      ++++.+.+|..++...|..+|+++||++||+++++|+.++|+|+|||++|||+.+++|+|++++|||+|||+|.||||+.
T Consensus        87 ~~~~~~~~~~~~~~~~l~~~gs~~qk~~~l~~~~~G~~~~~~a~tEp~~gsd~~~~~t~A~~~~~g~~lnG~K~~vs~~~  166 (236)
T d1ivha2          87 AVGLSYGAHSNLCINQLVRNGNEAQKEKYLPKLISGEYIGALAMSEPNAGSDVVSMKLKAEKKGNHYILNGNKFWITNGP  166 (236)
T ss_dssp             HHHHHHHHHHTTTHHHHHHHCCHHHHHHHHHHHHHTSSCEEEECCBTTBSSSGGGCCCEEEECSSEEEEEEEEEEEETGG
T ss_pred             ccceeeeehhhhhHHHHHHhCCHHHHHHHHHHHhCCCeEEEEEecCCCCCCccccCeEEEEEECCEEEEEEEEEEEeCCc
Confidence            98888877766677788999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCCEEEEEEEeCCC-----CCeeEEEEeCCc
Q 026317          211 FADVLVIFARNTTT-----NQINGYANQSIK  236 (240)
Q Consensus       211 ~Ad~~~v~a~~~~~-----~~~~~flVp~~~  236 (240)
                      .||+++|+|+++..     +++++|+||++.
T Consensus       167 ~a~~~~v~a~~~~~~~~~~~g~~~flV~~~~  197 (236)
T d1ivha2         167 DADVLIVYAKTDLAAVPASRGITAFIVEKGM  197 (236)
T ss_dssp             GCSEEEEEEESCTTCSSGGGGEEEEEEETTC
T ss_pred             cccccccccccccccccccCccEEEEEeCCC
Confidence            99999999997422     469999999875

>d2c12a2 e.6.1.1 (A:2-260) Nitroalkane oxidase {Fusarium oxysporum [TaxId: 5507]}

class: Multi-domain proteins (alpha and beta)
fold: Acyl-CoA dehydrogenase NM domain-like
superfamily: Acyl-CoA dehydrogenase NM domain-like
family: Medium chain acyl-CoA dehydrogenase, NM (N-terminal and middle) domains
domain: Nitroalkane oxidase
species: Fusarium oxysporum [TaxId: 5507]

Probab=100.00  E-value=1.2e-39  Score=270.02  Aligned_cols=184  Identities=21%  Similarity=0.276  Sum_probs=163.6

Q ss_pred             CCCCCCHHHHHHHHHHHHHHHhhccccHHHHHHh----C--CCCHHHHHHHHhcCcCCC-ccccCCCCCCCHHHHHHHHH
Q 026317           51 FDDLLTSEEQAVRMKVRECMEKEIAPIMAEYWEK----A--EFPFHVIPKLGALRVAGG-TIKGYGCPGHSVTGAAIAIA  123 (240)
Q Consensus        51 m~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~d~~----~--~~~~~~~~~l~~~Gl~~l-~p~~~GG~g~~~~~~~~v~e  123 (240)
                      |||.|+++++++++.+|+|+++.+.|...++++.    .  ..++++|++++++||+++ +|++|||.|+++.+++.++|
T Consensus         1 mdf~lt~eq~~l~~~~r~f~~~~~~p~~~~~~~~~d~~~~~~~~~e~~~~~~~~G~~~~~vPee~GG~g~~~~~~~~~~e   80 (259)
T d2c12a2           1 VDFKLSPSQLEARRHAQAFANTVLTKASAEYSTQKDQLSRFQATRPFYREAVRHGLIKAQVPIPLGGTMESLVHESIILE   80 (259)
T ss_dssp             CBCCCCHHHHHHHHHHHHHHHHTGGGHHHHHTTCSSHHHHHHTTHHHHHHHHHTTTTGGGSBGGGTCCBCCHHHHHHHHH
T ss_pred             CCCCCCHHHHHHHHHHHHHHHHhCCcchHHHhhhccccccccchHHHHHHHHHcCCCCcCCChHHhhccchhhhhhhhhh
Confidence            8899999999999999999999999877665332    2  347899999999999999 99999999999999999999


Q ss_pred             HHHccCCcchHHHHhhhhHHHHHHhccCCHHHHHhhchhhhc--CCceEEEEeeCCCCCCCcC-----CCceEEEEeCCE
Q 026317          124 EIARVDASCSTFILVHSSLAMLTIALCGSEEQKQKYLPSLAQ--LNTIACWALTEPAYGSDAS-----ALNTTATKVEGG  196 (240)
Q Consensus       124 ~la~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~l~~l~~--G~~~~~~a~tEp~~Gsd~~-----~~~t~a~~~~~g  196 (240)
                      +++++|++++..+.+| .++...+..+|+++||++||+++++  |+.++|+++|||++|||+.     +++|+|++++++
T Consensus        81 el~~~~~~~~~~~~~~-~~~~~~i~~~g~~eq~~~~l~~~~~~~g~~~~a~a~TEp~~Gsd~~~~~~~~~~t~a~~~g~~  159 (259)
T d2c12a2          81 ELFAVEPATSITIVAT-ALGLMPVILCDSPSLQEKFLKPFISGEGEPLASLMHSEPNGTANWLQKGGPGLQTTARKVGNE  159 (259)
T ss_dssp             HHHTTCCTTHHHHHHH-HHHHHHHHHSSCHHHHHHHTGGGGSSCSCCCEEEECCCTTCSTTTTCTTSCCCSCEEEEETTE
T ss_pred             hccccccccccccccc-cchHHHHHHhhhccccccccccccccceeeeeeccccCCccccccccccccccccccccccch
Confidence            9999999998887766 4677788899999999999999987  7889999999999999974     588999999999


Q ss_pred             EEEeeeEeeecCC-----CCCCEEEEEEEeCCC------------CCeeEEEEeCC
Q 026317          197 WILEGQKRWIGNS-----TFADVLVIFARNTTT------------NQINGYANQSI  235 (240)
Q Consensus       197 ~~LnG~K~~vs~~-----~~Ad~~~v~a~~~~~------------~~~~~flVp~~  235 (240)
                      |+|||+|+||||+     ..||+++|+|+++++            .++++|+||++
T Consensus       160 ~vlnG~K~~vt~a~~~~~~~ad~~~v~ar~~~~~~~~~~~~~~~~~g~s~~lVp~~  215 (259)
T d2c12a2         160 WVISGEKLWPSNSGGWDYKGADLACVVCRVSDDPSKPQDPNVDPATQIAVLLVTRE  215 (259)
T ss_dssp             EEEEEEEECCTTTTTTTSSCCSEEEEEEEECSCTTSCCCTTSCGGGGEEEEEECHH
T ss_pred             hccceeeeeecCCcccccccceEEEEEEEecCCCccccccccCCCCceEEEEEeCC
Confidence            9999999999998     458899999998542            35899999975

>d1rx0a2 e.6.1.1 (A:10-240) Isobutyryl-CoA dehydrogenase {Human (Homo sapiens) [TaxId: 9606]}

class: Multi-domain proteins (alpha and beta)
fold: Acyl-CoA dehydrogenase NM domain-like
superfamily: Acyl-CoA dehydrogenase NM domain-like
family: Medium chain acyl-CoA dehydrogenase, NM (N-terminal and middle) domains
domain: Isobutyryl-CoA dehydrogenase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=6.7e-39  Score=261.27  Aligned_cols=186  Identities=28%  Similarity=0.416  Sum_probs=173.6

Q ss_pred             CCCCHHHHHHHHHHHHHHHhhccccHHHHHHhCCCCHHHHHHHHhcCcCCC-ccccCCCCCCCHHHHHHHHHHHHccCCc
Q 026317           53 DLLTSEEQAVRMKVRECMEKEIAPIMAEYWEKAEFPFHVIPKLGALRVAGG-TIKGYGCPGHSVTGAAIAIAEIARVDAS  131 (240)
Q Consensus        53 ~~l~~~~~~l~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~l~~~Gl~~l-~p~~~GG~g~~~~~~~~v~e~la~~~~~  131 (240)
                      ..|+++++++++.+|+|+++++.|.+.++|+++.+|+++|++++++||+++ +|++|||.|.+..+.+.+.+++++++.+
T Consensus         8 ~~Lt~e~~~l~~~~r~F~~~~i~p~a~~~d~~~~~p~~~~~~l~~~Gl~~~~vp~~~GG~g~~~~~~~~~~e~l~~~~~~   87 (231)
T d1rx0a2           8 MGLNEEQKEFQKVAFDFAAREMAPNMAEWDQKELFPVDVMRKAAQLGFGGVYIQTDVGGSGLSRLDTSVIFEALATGCTS   87 (231)
T ss_dssp             TTCCHHHHHHHHHHHHHHHHHTHHHHHHHHHHTCCCHHHHHHHHHTTCSSTTSCGGGTCCCCCHHHHHHHHHHHHTTCHH
T ss_pred             CCCCHHHHHHHHHHHHHHHHhCchhHHHHHhcCCCCHHHHHHHHHcCCcccccchhhccccccchhhhhhHHHHhhhccc
Confidence            448999999999999999999999999999999999999999999999999 9999999999999999999999999999


Q ss_pred             chHHHHhhhhHHHHHHhccCCHHHHHhhchhhhcCCceEEEEeeCCCCCCCcCCCceEEEEeCCEEEEeeeEeeecCCCC
Q 026317          132 CSTFILVHSSLAMLTIALCGSEEQKQKYLPSLAQLNTIACWALTEPAYGSDASALNTTATKVEGGWILEGQKRWIGNSTF  211 (240)
Q Consensus       132 ~~~~~~~~~~~~~~~l~~~g~~~~~~~~l~~l~~G~~~~~~a~tEp~~Gsd~~~~~t~a~~~~~g~~LnG~K~~vs~~~~  211 (240)
                      .+.++.+| ..++..+..+++++|+++|++++.+|+..+++++|||+.|||..+++|+|++++|||+|||+|.||||+.+
T Consensus        88 ~~~~~~~~-~~~~~~l~~~~~~e~~~~~l~~~~~g~~~~~~~~te~~~gsd~~~~~t~a~~~~~g~~LnG~K~~vs~~~~  166 (231)
T d1rx0a2          88 TTAYISIH-NMCAWMIDSFGNEEQRHKFCPPLCTMEKFASYCLTEPGSGSDAASLLTSAKKQGDHYILNGSKAFISGAGE  166 (231)
T ss_dssp             HHHHHHHH-HHHHHHHHHHSCHHHHHHHHHHHHTTSSCEEEECCBTTBSSSGGGCCCEEEEETTEEEEEEEEEEEETTTT
T ss_pred             cccccccc-cchhhhhhhhcchhhhhhhcchhhcccccccccccccccCCCCCCceEEEEEECCEEEEEeEEccccCCCc
Confidence            88877766 46677888999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCEEEEEEEeCCC--CCeeEEEEeCCc--eec
Q 026317          212 ADVLVIFARNTTT--NQINGYANQSIK--FVL  239 (240)
Q Consensus       212 Ad~~~v~a~~~~~--~~~~~flVp~~~--~~~  239 (240)
                      ||+++|.|++++.  .++++|+||++.  ++|
T Consensus       167 Ad~~~v~a~~~~~~~~~~~~~lv~~d~~Gv~~  198 (231)
T d1rx0a2         167 SDIYVVMCRTGGPGPKGISCIVVEKGTPGLSF  198 (231)
T ss_dssp             CSEEEEEEESSSSSGGGEEEEEEETTCTTEEE
T ss_pred             CCEEEEEEeecCCCCCceEEEEEeCCCCceEe
Confidence            9999999998643  368999999987  654

>d1buca2 e.6.1.1 (A:1-232) Butyryl-CoA dehydrogenase, NM domains {Megasphaera elsdenii [TaxId: 907]}

class: Multi-domain proteins (alpha and beta)
fold: Acyl-CoA dehydrogenase NM domain-like
superfamily: Acyl-CoA dehydrogenase NM domain-like
family: Medium chain acyl-CoA dehydrogenase, NM (N-terminal and middle) domains
domain: Butyryl-CoA dehydrogenase, NM domains
species: Megasphaera elsdenii [TaxId: 907]

Probab=100.00  E-value=7.9e-37  Score=248.82  Aligned_cols=186  Identities=30%  Similarity=0.404  Sum_probs=166.5

Q ss_pred             CCCCCCHHHHHHHHHHHHHHHhhccccHHHHHHhCCCCHHHHHHHHhcCcCCC-ccccCCCC---CCCHHHHHHHHHHHH
Q 026317           51 FDDLLTSEEQAVRMKVRECMEKEIAPIMAEYWEKAEFPFHVIPKLGALRVAGG-TIKGYGCP---GHSVTGAAIAIAEIA  126 (240)
Q Consensus        51 m~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~l~~~Gl~~l-~p~~~GG~---g~~~~~~~~v~e~la  126 (240)
                      |||.+|++++++++.+|+|+++++.|.+.++|+.+.+|+++|++++++||+++ +|++|||.   +.....+..+.+.++
T Consensus         1 Mdf~lt~~~~~l~~~~r~f~~~~l~p~~~e~D~~~~~p~e~~~~l~~~G~~~~~vP~~~Gg~~~~~~~~~~~~~~~~~~~   80 (232)
T d1buca2           1 MDFNLTDIQQDFLKLAHDFGEKKLAPTVTERDHKGIYDKELIDELLSLGITGAYFEEKYGGSGDDGGDVLSYILAVEELA   80 (232)
T ss_dssp             CBCCCCHHHHHHHHHHHHHHHHTTTTTHHHHHHHTCCCHHHHHHHHTTSGGGTTSCGGGTCGGGGTCCHHHHHHHHHHHH
T ss_pred             CcCCCCHHHHHHHHHHHHHHHHhCchhHHHHHhcCCCCHHHHHHHHhhhcccccccccccccccccccchheehhhhhhh
Confidence            88999999999999999999999999999999999999999999999999999 99999964   567888888888888


Q ss_pred             ccCCcchHHHHhhhhHHHHHHhccCCHHHHHhhchhhhcCCceEEEEeeCCCCCCCcCCCceEEEEeCCE-EEEeeeEee
Q 026317          127 RVDASCSTFILVHSSLAMLTIALCGSEEQKQKYLPSLAQLNTIACWALTEPAYGSDASALNTTATKVEGG-WILEGQKRW  205 (240)
Q Consensus       127 ~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~l~~l~~G~~~~~~a~tEp~~Gsd~~~~~t~a~~~~~g-~~LnG~K~~  205 (240)
                      ............+..+....+..+++++||.+|++++++|+.++|+++|||++|+|...+.|+|++++|| |+|||+|+|
T Consensus        81 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~k~~~~~~~~~G~~~~~~a~te~~~gs~~~~~~t~a~~~~dg~~~lnG~K~~  160 (232)
T d1buca2          81 KYDAGVAITLSATVSLCANPIWQFGTEAQKEKFLVPLVEGTKLGAFGLTEPNAGTDASGQQTIATKNDDGTYTLNGSKIF  160 (232)
T ss_dssp             HHCHHHHHHHHHHHHHTHHHHHHHCCHHHHHHTHHHHHHTSSCEEEECCBTTBSSCGGGCCCEEEECTTSCEEEEEEEEE
T ss_pred             hccccccccccchhhhhhhHHHHhhhhhhhhhhhhhhhCCCEEecccccccccccccccceEEEEEcCCCEEEEEEEEee
Confidence            7666544444444455667889999999999999999999999999999999999999999999998875 999999999


Q ss_pred             ecCCCCCCEEEEEEEeCCC---CCeeEEEEeCCc
Q 026317          206 IGNSTFADVLVIFARNTTT---NQINGYANQSIK  236 (240)
Q Consensus       206 vs~~~~Ad~~~v~a~~~~~---~~~~~flVp~~~  236 (240)
                      |||+..||+++|.|+++++   .++++|+||+++
T Consensus       161 vt~a~~ad~~~v~a~~~~~~~~~g~~~~lv~~~~  194 (232)
T d1buca2         161 ITNGGAADIYIVFAMTDKSKGNHGITAFILEDGT  194 (232)
T ss_dssp             EETTTTCSEEEEEEESCSSSSTTSEEEEEEETTC
T ss_pred             ecccccceEEEEEEEecCCCCCceeEEEEEeCCC
Confidence            9999999999999998544   468999999876

>d1r2ja2 e.6.1.1 (A:3-212) Protein FkbI {Streptomyces hygroscopicus [TaxId: 1912]}

class: Multi-domain proteins (alpha and beta)
fold: Acyl-CoA dehydrogenase NM domain-like
superfamily: Acyl-CoA dehydrogenase NM domain-like
family: Medium chain acyl-CoA dehydrogenase, NM (N-terminal and middle) domains
domain: Protein FkbI
species: Streptomyces hygroscopicus [TaxId: 1912]

Probab=100.00  E-value=2.1e-36  Score=243.13  Aligned_cols=166  Identities=20%  Similarity=0.240  Sum_probs=152.8

Q ss_pred             HHHHhhccccHHHHHHhCCCCHHHHHHHHhcCcCCC-ccccCCCCCCCHHHHHHHHHHHHccCCcchHHHHhhhhHHHHH
Q 026317           68 ECMEKEIAPIMAEYWEKAEFPFHVIPKLGALRVAGG-TIKGYGCPGHSVTGAAIAIAEIARVDASCSTFILVHSSLAMLT  146 (240)
Q Consensus        68 ~~~~~~~~~~~~~~d~~~~~~~~~~~~l~~~Gl~~l-~p~~~GG~g~~~~~~~~v~e~la~~~~~~~~~~~~~~~~~~~~  146 (240)
                      .|+.+.+.|++.++|+++.+|+++|+++++.||+++ +|++|||.|+++.+++.++|+++++|.++++++..|. ++..+
T Consensus         4 a~~~~~i~~~Aae~d~~~~~p~~~~~~l~~~Gl~~~~iP~e~GG~g~~~~~~~~v~e~l~~~~~~~~~~~~~~~-~~~~~   82 (210)
T d1r2ja2           4 ALLTDLVGDRAAEWDTSGELPRDLLVRLGADGLLCAEVAAEHGGLGLGSRENGEFTAHVGSLCSSLRSVMTSQG-MAAWT   82 (210)
T ss_dssp             HHHHHHHSSCHHHHHHHTCCCHHHHHHHHHTTTTSTTSCGGGTCCCCCHHHHHHHHHHHHHHCHHHHHHHHHHH-HHHHH
T ss_pred             HHHHhhhhHhHHHHHHhCCCCHHHHHHHHHcCCCcccCChhHccccccHHHHhhhhcccccccccccccccccc-ccchh
Confidence            457788999999999999999999999999999999 9999999999999999999999999999888777764 67778


Q ss_pred             HhccCCHHHHHhhchhhhcCCceEEEEeeCCCCCCCcCCCceEEEEeCCEEEEeeeEeeecCCCCCCEEEEEEEeCCCCC
Q 026317          147 IALCGSEEQKQKYLPSLAQLNTIACWALTEPAYGSDASALNTTATKVEGGWILEGQKRWIGNSTFADVLVIFARNTTTNQ  226 (240)
Q Consensus       147 l~~~g~~~~~~~~l~~l~~G~~~~~~a~tEp~~Gsd~~~~~t~a~~~~~g~~LnG~K~~vs~~~~Ad~~~v~a~~~~~~~  226 (240)
                      |..+|+++||++||+++++|.. .++++|||..|||...++|++++++++|+|||+|.||||+..||+++|+|++++ ++
T Consensus        83 l~~~gs~~qk~~~l~~~~~g~~-~~~~~te~~~gs~~~~~~t~a~~~~~g~~l~G~K~~vs~a~~Ad~~~v~a~~~~-~~  160 (210)
T d1r2ja2          83 VQRLGDAGQRATFLKELTSGKL-AAVGFSERQAGSDLSAMRTRVRLDGDTAVVDGHKVWTTAAAYADHLVVFGLQED-GS  160 (210)
T ss_dssp             HHHHSCHHHHHHHHHHTTCC-C-EEEECCBTTBSSCGGGCCCEEEEETTEEEEEEEEEEETTTTTCSEEEEEEBCSS-SC
T ss_pred             hhhccccccccccccccccccc-ccccccccccccccccccceEEEeccceEEEEeecccccccccccccceeeecC-CC
Confidence            9999999999999999999975 689999999999999999999999999999999999999999999999999754 45


Q ss_pred             eeEEEEeCCc
Q 026317          227 INGYANQSIK  236 (240)
Q Consensus       227 ~~~flVp~~~  236 (240)
                      .++|+||++.
T Consensus       161 ~~~~lv~~~~  170 (210)
T d1r2ja2         161 GAVVVVPADT  170 (210)
T ss_dssp             CEEEEEETTS
T ss_pred             ceEEeecCCC
Confidence            6899999875

>d2ddha3 e.6.1.2 (A:1-267) Peroxisomal acyl-CoA oxidase-II, domains 1 and 2 {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Multi-domain proteins (alpha and beta)
fold: Acyl-CoA dehydrogenase NM domain-like
superfamily: Acyl-CoA dehydrogenase NM domain-like
family: acyl-CoA oxidase N-terminal domains
domain: Peroxisomal acyl-CoA oxidase-II, domains 1 and 2
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.91  E-value=7.2e-25  Score=180.94  Aligned_cols=172  Identities=15%  Similarity=0.152  Sum_probs=121.1

Q ss_pred             CHHHHHHHHHHHHHHHhhccccHHHHHHhCCCC-HHHHHHHHhcCcCCC-ccccCCCCCCCHHHHHHHHHHHHccCCcch
Q 026317           56 TSEEQAVRMKVRECMEKEIAPIMAEYWEKAEFP-FHVIPKLGALRVAGG-TIKGYGCPGHSVTGAAIAIAEIARVDASCS  133 (240)
Q Consensus        56 ~~~~~~l~~~~~~~~~~~~~~~~~~~d~~~~~~-~~~~~~l~~~Gl~~l-~p~~~GG~g~~~~~~~~v~e~la~~~~~~~  133 (240)
                      ++++.+++..+++++.+..  .... +....+. .+.++.....++... .++++|+.  ++.....+.+... .+.+.+
T Consensus        26 ~~e~~~~r~~v~~~i~~dp--~f~~-~~~~~~~~~e~~~~~~~~~~~~~~~~~~~G~~--~~~~~~~~~~~~~-~~~~~~   99 (267)
T d2ddha3          26 SPENTRRRREIENLILNDP--DFQH-EDYNFLTRSQRYEVAVKKSATMVKKMREYGIS--DPEEIMWFKNSVH-RGHPEP   99 (267)
T ss_dssp             SHHHHHHHHHHHHHHHTCG--GGCC-SCGGGSCHHHHHHHHHHHHHHHHHHHHHTTCC--CHHHHHHHHHHHH-TTCCCT
T ss_pred             CHHHHHHHHHHHHHHhcCc--ccCC-cccccCCHHHHHHHHHHHHHHHHHHHHhcCCC--CHHHHHHHHhhhc-cCCCce
Confidence            4567778888888887631  1110 0011122 244554444444333 44555554  3444444444433 333333


Q ss_pred             HHHHhhhhHHHHHHhccCCHHHHHhhchhhhcCCceEEEEeeCCCCCCCcCCCceEEEEeC--CEEEEee-----eEeee
Q 026317          134 TFILVHSSLAMLTIALCGSEEQKQKYLPSLAQLNTIACWALTEPAYGSDASALNTTATKVE--GGWILEG-----QKRWI  206 (240)
Q Consensus       134 ~~~~~~~~~~~~~l~~~g~~~~~~~~l~~l~~G~~~~~~a~tEp~~Gsd~~~~~t~a~~~~--~g~~LnG-----~K~~v  206 (240)
                        +.+|.+++...|..+|+++||++|||++++|+.++|+|+|||++|||+.+++|+|++++  +.|+|||     +|+||
T Consensus       100 --~~v~~~l~~~~i~~~Gt~eqk~~~l~~~~~g~~~~~~a~tEp~~Gsd~~~~~T~A~~~~~~~~~vlnG~k~~~~K~wi  177 (267)
T d2ddha3         100 --LDLHLGMFLPTLLHQATAEQQERFFMPAWNLEITGTYAQTEMGHGTHLRGLETTATYDPKTQEFILNSPTVTSIKWWP  177 (267)
T ss_dssp             --THHHHHTHHHHHC-CCCHHHHHHHHHHHHTTSSCEEEECCBTTBSSCGGGCCCEEEEETTTTEEEEECCSSTTSEECC
T ss_pred             --ehhhhhhhhhHHHhhCCHHHHHHHHHHHhcCCeeeeehhcccCccccccccccceeecccCceeecCccccceeeecC
Confidence              34566677788999999999999999999999999999999999999999999999876  5699999     69999


Q ss_pred             cC-CCCCCEEEEEEEeCCC---CCeeEEEEeCC
Q 026317          207 GN-STFADVLVIFARNTTT---NQINGYANQSI  235 (240)
Q Consensus       207 s~-~~~Ad~~~v~a~~~~~---~~~~~flVp~~  235 (240)
                      || +..||+++|+|++..+   .|+++|+||..
T Consensus       178 t~~~~~a~~~iv~a~~~~~~~~~G~s~F~V~~~  210 (267)
T d2ddha3         178 GGLGKTSNHAIVLAQLITQGECYGLHAFVVPIR  210 (267)
T ss_dssp             TTTTTTCSEEEEEEEEEETTEEEEEEEEEEECB
T ss_pred             CCCcccCCEEEEeeeccCCCCCCccEEEEEEec
Confidence            99 6789999999998533   46999999964

>d1w07a3 e.6.1.2 (A:2-272) Acyl-coenzyme A oxidase 1, domains 1 and 2 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Multi-domain proteins (alpha and beta)
fold: Acyl-CoA dehydrogenase NM domain-like
superfamily: Acyl-CoA dehydrogenase NM domain-like
family: acyl-CoA oxidase N-terminal domains
domain: Acyl-coenzyme A oxidase 1, domains 1 and 2
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=99.89  E-value=1.7e-24  Score=178.97  Aligned_cols=169  Identities=21%  Similarity=0.285  Sum_probs=119.6

Q ss_pred             CHHHHHHHHHHHHHHHhhccccHHHHHHhCCCC-HHHHHHHHhcCcCCC-ccccCCCCCCCHHHHHHHHHHHHccCCcch
Q 026317           56 TSEEQAVRMKVRECMEKEIAPIMAEYWEKAEFP-FHVIPKLGALRVAGG-TIKGYGCPGHSVTGAAIAIAEIARVDASCS  133 (240)
Q Consensus        56 ~~~~~~l~~~~~~~~~~~~~~~~~~~d~~~~~~-~~~~~~l~~~Gl~~l-~p~~~GG~g~~~~~~~~v~e~la~~~~~~~  133 (240)
                      ++++.++++.+++|+.+.  |.... +....+. .+.++...+.+.... ...++|   .+......+...+..   +  
T Consensus        27 ~ee~~~~r~~v~~~~~~d--p~f~~-~~~~~~sr~e~~~~~~~~~~~~~~~~~~~g---~~~~~~~~~~~~~~~---~--   95 (271)
T d1w07a3          27 SRHAFEVSDRIARLVASD--PVFEK-SNRARLSRKELFKSTLRKCAHAFKRIIELR---LNEEEAGRLRHFIDQ---P--   95 (271)
T ss_dssp             SHHHHHHHHHHHHHHHTC--GGGCC-TTTTSSCHHHHHHHHHHHHHHHHHHHHHTT---CCHHHHHHHHHHHCC---C--
T ss_pred             CHHHHHHHHHHHHHHhcC--cccCC-CCcCCCCHHHHHHHHHHHHHHHHHHHHHcC---CChhhhHHHHHHhcc---c--
Confidence            567788899999988764  21111 0111222 244443333322222 223333   334444444443322   2  


Q ss_pred             HHHHhhhhHHHHHHhccCCHHHHHhhchhhhcCCceEEEEeeCCCCCCCcCCCceEEEEe--CCEEEEee-----eEeee
Q 026317          134 TFILVHSSLAMLTIALCGSEEQKQKYLPSLAQLNTIACWALTEPAYGSDASALNTTATKV--EGGWILEG-----QKRWI  206 (240)
Q Consensus       134 ~~~~~~~~~~~~~l~~~g~~~~~~~~l~~l~~G~~~~~~a~tEp~~Gsd~~~~~t~a~~~--~~g~~LnG-----~K~~v  206 (240)
                      ..+.+|..++...|..+||++||++|||++++|+.++|+|+|||++|||+.+++|+|+++  +++|+|||     +|+|+
T Consensus        96 ~~~~vh~~~~~~~i~~~Gt~eQk~~~Lp~l~~G~~~~~~a~TEp~~GSd~~~l~T~A~~d~~gd~~vlng~k~~~~K~wi  175 (271)
T d1w07a3          96 AYVDLHWGMFVPAIKGQGTEEQQKKWLSLANKMQIIGCYAQTELGHGSNVQGLETTATLDPKTDEFVIHTPTQTASKWWP  175 (271)
T ss_dssp             CHHHHHHHTHHHHHHHHSCHHHHHHHHHHHHTTSSCEEEECCBTTBSSCGGGCCCEEEEETTTTEEEEECCSGGGSEECC
T ss_pred             hHHHHHHHhhHHHHHhhCCHHHHHHhhHHHhCCCeEEEecccCCccccCcccccceeeecCCCceeeecccccceeeecc
Confidence            234577778888999999999999999999999999999999999999999999999987  56799999     89999


Q ss_pred             cC-CCCCCEEEEEEEeCCC---CCeeEEEEeCC
Q 026317          207 GN-STFADVLVIFARNTTT---NQINGYANQSI  235 (240)
Q Consensus       207 s~-~~~Ad~~~v~a~~~~~---~~~~~flVp~~  235 (240)
                      +| +..|++++|+|++..+   .++++|+||..
T Consensus       176 ~~~g~~a~~~vv~a~~~~~~~~~g~~~flV~~~  208 (271)
T d1w07a3         176 GGLGKVSTHAVVYARLITNGKDYGIHGFIVQLR  208 (271)
T ss_dssp             TTTTTTCSEEEEEEEEEETTEEEEEEEEEEECB
T ss_pred             CCchhhhhhhheeeeecCCCCCCCEEEEEEecc
Confidence            98 5679999999998433   46899999954

>d1u8va2 e.6.1.1 (A:1-275) 4-hydroxybutyryl-CoA dehydratase AbfD, NM domains {Clostridium aminobutyricum [TaxId: 33953]}

class: Multi-domain proteins (alpha and beta)
fold: Acyl-CoA dehydrogenase NM domain-like
superfamily: Acyl-CoA dehydrogenase NM domain-like
family: Medium chain acyl-CoA dehydrogenase, NM (N-terminal and middle) domains
domain: 4-hydroxybutyryl-CoA dehydratase AbfD, NM domains
species: Clostridium aminobutyricum [TaxId: 33953]

Probab=99.55  E-value=4.9e-15  Score=121.90  Aligned_cols=92  Identities=18%  Similarity=0.168  Sum_probs=78.1

Q ss_pred             HHHhccCCH--HHHHhhchhhhcCCceEEEEeeCCCCCCCcCC--------CceEEEEeCCEEEEeeeEeeecCCCCCCE
Q 026317          145 LTIALCGSE--EQKQKYLPSLAQLNTIACWALTEPAYGSDASA--------LNTTATKVEGGWILEGQKRWIGNSTFADV  214 (240)
Q Consensus       145 ~~l~~~g~~--~~~~~~l~~l~~G~~~~~~a~tEp~~Gsd~~~--------~~t~a~~~~~g~~LnG~K~~vs~~~~Ad~  214 (240)
                      .....+|++  +++++|++.+.++++..|.++|||..|++...        ..++++++++||+|||.|.|+||+..||+
T Consensus       118 ~~~~~~g~~~~e~~~~yl~~~~~~dl~~t~altePq~dr~~~~~~q~~~~~~~~v~~~~~~g~vvnG~K~~~T~a~~ad~  197 (275)
T d1u8va2         118 EIDQKYGTNYHKNFTEYLKYIQENDLIVDGAMTDPKGDRGLAPSAQKDPDLFLRIVEKREDGIVVRGAKAHQTGSINSHE  197 (275)
T ss_dssp             HHHHHHCCCHHHHHHHHHHHHHHHTCCEEEECCCCCSCTTSCGGGCSSTTSSCEEEEECSSEEEEEEEECSCTTCTTCSE
T ss_pred             HHhhhhCcHHHHHHHHHHHHHHhCCeEEEEeeecCCCCCccChhhccCccceEEEEEecCCEEEEeeEEEEecCCCccce
Confidence            355678887  78899999999999999999999999988653        23667788999999999999999999999


Q ss_pred             EEEEEEeCCC----CCeeEEEEeCCc
Q 026317          215 LVIFARNTTT----NQINGYANQSIK  236 (240)
Q Consensus       215 ~~v~a~~~~~----~~~~~flVp~~~  236 (240)
                      ++|++++...    .+.++|+||+++
T Consensus       198 ~~v~~~~~~~~~~~~~~~~f~Vp~~t  223 (275)
T d1u8va2         198 HIIMPTIAMTEADKDYAVSFACPSDA  223 (275)
T ss_dssp             EEECCSSCCCGGGGGGCEEEEEETTC
T ss_pred             EEEEeccCCCCCCCCcEEEEEEeCCC
Confidence            9999987432    357899999863