Citrus Sinensis ID: 026331

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240
MALWVILCVGFLSLVSSVQGYGGWINAHATFYGGGDASGTMGGACGYGNLYSQGYGTNTAALSTALFNNGLSCGACFQIMCANDPQWCLRGSIIVTATNFCPPGGWCDPPNHHFDLSQPVFQHIAQYRAGIVPVIYRRVRCKRNGGIRFTINGHSYFNLVLITNVGGAGDVRAVSIKGSRTRWQPMSRNWGQNWQSNSYLNGQSLSFVVTTSNGHSVVSYNVAPPNWSFGQTYTGRQFRY
cHHHHHHHHHHHHHHHccccccccEEEEEEEEccccccccccccccccccccccccccEEEEcccccccccccccEEcEEccccccccccccEEEEEccccccccccccccccccccHHHHHHHHHHHccEEEEEEEEEEEcccccEEEEEcccccEEEEEEEEEcccccEEEEEEEcccccEEEcccccccccccccccccccEEEEEEEccccEEEEccccccccccccEEEEccccc
cHHHHHHHHHHHHHcccccccccccccEEEEEcccccccccccccccccccccccccHHHHHHHHHHccccccccEEEEEEccccccccccEEEEEEcccccccccccccccccccHHHHHHHHHHHHccccEEEEEEEcccccccEEEEEcccccEEEEEEEEccccccEEEEEEEcccccccEcccccccccccccEEcccEEEEEEEEccccEEEEcccccccccEcEEEccccccc
MALWVILCVGFLSLVSSVQGYGGWINAHAtfygggdasgtmggacgygnlysqgygtnTAALSTALFnnglscgacfqimcandpqwclrgsiivtatnfcppggwcdppnhhfdlsqpVFQHIAQYRAGIVPVIYRRVRckrnggirftinGHSYFNLVLITNvggagdvravsikgsrtrwqpmsrnwgqnwqsnsylngQSLSFVVTTSNGhsvvsynvappnwsfgqtytgrqfry
MALWVILCVGFLSLVSSVQGYGGWINAHATFYGGGDASGTMGGACGYGNLYSQGYGTNTAALSTALFNNGLSCGACFQIMCANDPQWCLRGSIIVTATNFCPPGGWCDPPNHHFDLSQPVFQHIAQYRAGIVPVIYRRVRCKRNGGIrftinghsYFNLVLITNVGGAGDVRAVSIKgsrtrwqpmsrnWGQNWQSNSYLNGQSLSFVVTTSNGHSVVsynvappnwsfgqtytgrqfry
MALWVILCVGFLSLVSSVQGYGGWINAHATFYgggdasgtmggacgYGNLYSQGYGTNTAALSTALFNNGLSCGACFQIMCANDPQWCLRGSIIVTATNFCPPGGWCDPPNHHFDLSQPVFQHIAQYRAGIVPVIYRRVRCKRNGGIRFTINGHSYFNLVLITNVGGAGDVRAVSIKGSRTRWQPMSRNWGQNWQSNSYLNGQSLSFVVTTSNGHSVVSYNVAPPNWSFGQTYTGRQFRY
**LWVILCVGFLSLVSSVQGYGGWINAHATFYGGGDASGTMGGACGYGNLYSQGYGTNTAALSTALFNNGLSCGACFQIMCANDPQWCLRGSIIVTATNFCPPGGWCDPPNHHFDLSQPVFQHIAQYRAGIVPVIYRRVRCKRNGGIRFTINGHSYFNLVLITNVGGAGDVRAVSIKGSRTRWQPMSRNWGQNWQSNSYLNGQSLSFVVTTSNGHSVVSYNVAPPNWSFGQTYT******
MALWVILCVGFLSLVSSVQGYGGWINAHATFYGGGDASGTMGGACGYGNLYSQGYGTNTAALSTALFNNGLSCGACFQIMCANDPQWCLRGSIIVTATNFCPPGGWCDPPNHHFDLSQPVFQHIAQYRAGIVPVIYRRVRCKRNGGIRFTINGHSYFNLVLITNVGGAGDVRAVSIKGSRTRWQPMSRNWGQNWQSNSYLNGQSLSFVVTTSNGHSVVSYNVAPPNWSFGQTYTGRQFRY
MALWVILCVGFLSLVSSVQGYGGWINAHATFYGGGDASGTMGGACGYGNLYSQGYGTNTAALSTALFNNGLSCGACFQIMCANDPQWCLRGSIIVTATNFCPPGGWCDPPNHHFDLSQPVFQHIAQYRAGIVPVIYRRVRCKRNGGIRFTINGHSYFNLVLITNVGGAGDVRAVSIKGSRTRWQPMSRNWGQNWQSNSYLNGQSLSFVVTTSNGHSVVSYNVAPPNWSFGQTYTGRQFRY
MALWVILCVGFLSLVSSVQGYGGWINAHATFYGGGDASGTMGGACGYGNLYSQGYGTNTAALSTALFNNGLSCGACFQIMCANDPQWCLRGSIIVTATNFCPPGGWCDPPNHHFDLSQPVFQHIAQYRAGIVPVIYRRVRCKRNGGIRFTINGHSYFNLVLITNVGGAGDVRAVSIKGSRTRWQPMSRNWGQNWQSNSYLNGQSLSFVVTTSNGHSVVSYNVAPPNWSFGQTYTGRQFR*
iHHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
iiiiiHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
ooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
ooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
SSSSSSSSSSSSSSSSSSSSoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
SSSSSSSSSSSSSSSSSSSSSooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
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MALWVILCVGFLSLVSSVQGYGGWINAHATFYGGGDASGTMGGACGYGNLYSQGYGTNTAALSTALFNNGLSCGACFQIMCANDPQWCLRGSIIVTATNFCPPGGWCDPPNHHFDLSQPVFQHIAQYRAGIVPVIYRRVRCKRNGGIRFTINGHSYFNLVLITNVGGAGDVRAVSIKGSRTRWQPMSRNWGQNWQSNSYLNGQSLSFVVTTSNGHSVVSYNVAPPNWSFGQTYTGRQFRY
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query240 2.2.26 [Sep-21-2011]
Q38864255 Expansin-A5 OS=Arabidopsi yes no 0.904 0.850 0.844 1e-109
O80622253 Expansin-A15 OS=Arabidops no no 0.995 0.944 0.758 1e-104
Q9C554250 Expansin-A1 OS=Arabidopsi no no 0.995 0.956 0.768 1e-104
Q9LDR9249 Expansin-A10 OS=Arabidops no no 0.987 0.951 0.754 1e-101
Q9FMA0255 Expansin-A14 OS=Arabidops no no 0.979 0.921 0.721 1e-100
Q0DHB7246 Expansin-A4 OS=Oryza sati yes no 0.991 0.967 0.699 6e-97
A2Y5R6246 Expansin-A4 OS=Oryza sati N/A no 0.991 0.967 0.699 6e-97
O22874253 Expansin-A8 OS=Arabidopsi no no 0.975 0.924 0.703 3e-94
Q38866255 Expansin-A2 OS=Arabidopsi no no 0.983 0.925 0.674 4e-92
Q9LZ99258 Expansin-A9 OS=Arabidopsi no no 0.995 0.926 0.662 8e-92
>sp|Q38864|EXPA5_ARATH Expansin-A5 OS=Arabidopsis thaliana GN=EXPA5 PE=2 SV=1 Back     alignment and function desciption
 Score =  392 bits (1008), Expect = e-109,   Method: Compositional matrix adjust.
 Identities = 184/218 (84%), Positives = 204/218 (93%), Gaps = 1/218 (0%)

Query: 24  WINAHATFYGGGDASGTMGGACGYGNLYSQGYGTNTAALSTALFNNGLSCGACFQIMCAN 83
           WINAHATFYGGGDASGTMGGACGYGNLYSQGYG  TAALSTALF+ GLSCGACF++MC N
Sbjct: 38  WINAHATFYGGGDASGTMGGACGYGNLYSQGYGLETAALSTALFDQGLSCGACFELMCVN 97

Query: 84  DPQWCLRG-SIIVTATNFCPPGGWCDPPNHHFDLSQPVFQHIAQYRAGIVPVIYRRVRCK 142
           DPQWC++G SI+VTATNFCPPGG CDPPNHHFDLSQP+++ IA Y++GI+PV+YRRVRCK
Sbjct: 98  DPQWCIKGRSIVVTATNFCPPGGACDPPNHHFDLSQPIYEKIALYKSGIIPVMYRRVRCK 157

Query: 143 RNGGIRFTINGHSYFNLVLITNVGGAGDVRAVSIKGSRTRWQPMSRNWGQNWQSNSYLNG 202
           R+GGIRFTINGHSYFNLVL+TNVGGAGDV +VS+KGSRT+WQ MSRNWGQNWQSNSYLNG
Sbjct: 158 RSGGIRFTINGHSYFNLVLVTNVGGAGDVHSVSMKGSRTKWQLMSRNWGQNWQSNSYLNG 217

Query: 203 QSLSFVVTTSNGHSVVSYNVAPPNWSFGQTYTGRQFRY 240
           QSLSFVVTTS+  SVVS+NVAPP WSFGQTYTG QFRY
Sbjct: 218 QSLSFVVTTSDRRSVVSFNVAPPTWSFGQTYTGGQFRY 255
Causes loosening and extension of plant cell walls by disrupting non-covalent bonding between cellulose microfibrils and matrix glucans. No enzymatic activity has been found.
Arabidopsis thaliana (taxid: 3702)
>sp|O80622|EXP15_ARATH Expansin-A15 OS=Arabidopsis thaliana GN=EXPA15 PE=2 SV=2 Back     alignment and function description
>sp|Q9C554|EXPA1_ARATH Expansin-A1 OS=Arabidopsis thaliana GN=EXPA1 PE=2 SV=1 Back     alignment and function description
>sp|Q9LDR9|EXP10_ARATH Expansin-A10 OS=Arabidopsis thaliana GN=EXPA10 PE=2 SV=1 Back     alignment and function description
>sp|Q9FMA0|EXP14_ARATH Expansin-A14 OS=Arabidopsis thaliana GN=EXPA14 PE=2 SV=1 Back     alignment and function description
>sp|Q0DHB7|EXPA4_ORYSJ Expansin-A4 OS=Oryza sativa subsp. japonica GN=EXPA4 PE=2 SV=1 Back     alignment and function description
>sp|A2Y5R6|EXPA4_ORYSI Expansin-A4 OS=Oryza sativa subsp. indica GN=EXPA4 PE=2 SV=1 Back     alignment and function description
>sp|O22874|EXPA8_ARATH Expansin-A8 OS=Arabidopsis thaliana GN=EXPA8 PE=2 SV=1 Back     alignment and function description
>sp|Q38866|EXPA2_ARATH Expansin-A2 OS=Arabidopsis thaliana GN=EXPA2 PE=2 SV=2 Back     alignment and function description
>sp|Q9LZ99|EXPA9_ARATH Expansin-A9 OS=Arabidopsis thaliana GN=EXPA9 PE=2 SV=1 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query240
429326524241 expansin protein [Populus tomentosa] 1.0 0.995 0.858 1e-118
356572744259 PREDICTED: expansin-A15-like [Glycine ma 0.966 0.895 0.868 1e-117
224141413249 hypothetical protein POPTRDRAFT_778530 [ 1.0 0.963 0.839 1e-116
225452857240 PREDICTED: expansin-A1 [Vitis vinifera] 0.995 0.995 0.85 1e-115
255584815241 Alpha-expansin 5 precursor, putative [Ri 0.95 0.946 0.886 1e-115
429326522241 expansin protein [Populus tomentosa] 0.95 0.946 0.903 1e-115
226001019242 alpha expansin [Rosa hybrid cultivar] 1.0 0.991 0.826 1e-114
357501937242 Alpha-expansin [Medicago truncatula] gi| 0.975 0.966 0.856 1e-114
224080161241 hypothetical protein POPTRDRAFT_556331 [ 0.95 0.946 0.886 1e-114
357501939230 Alpha-expansin [Medicago truncatula] gi| 0.945 0.986 0.878 1e-113
>gi|429326524|gb|AFZ78602.1| expansin protein [Populus tomentosa] Back     alignment and taxonomy information
 Score =  431 bits (1107), Expect = e-118,   Method: Compositional matrix adjust.
 Identities = 207/241 (85%), Positives = 226/241 (93%), Gaps = 1/241 (0%)

Query: 1   MALWVILCVGFLSLVSSVQGY-GGWINAHATFYGGGDASGTMGGACGYGNLYSQGYGTNT 59
           MAL+  L VGFLS+VSSV GY GGWINAHATFYGGGDASGTMGGACGYGNLYSQGYG NT
Sbjct: 1   MALFGFLLVGFLSIVSSVHGYYGGWINAHATFYGGGDASGTMGGACGYGNLYSQGYGANT 60

Query: 60  AALSTALFNNGLSCGACFQIMCANDPQWCLRGSIIVTATNFCPPGGWCDPPNHHFDLSQP 119
           AALSTALF+NGLSCGACF+I C NDP+WCLRGSI++TATNFCPPGGWCDPPN HFDLSQP
Sbjct: 61  AALSTALFDNGLSCGACFEIRCVNDPKWCLRGSIVITATNFCPPGGWCDPPNKHFDLSQP 120

Query: 120 VFQHIAQYRAGIVPVIYRRVRCKRNGGIRFTINGHSYFNLVLITNVGGAGDVRAVSIKGS 179
           VFQHIAQYRAGIVPVIYRRVRC+++GGIRFTINGHSYFNLVL+TNVGGAGDVR+V+IKGS
Sbjct: 121 VFQHIAQYRAGIVPVIYRRVRCRKSGGIRFTINGHSYFNLVLVTNVGGAGDVRSVAIKGS 180

Query: 180 RTRWQPMSRNWGQNWQSNSYLNGQSLSFVVTTSNGHSVVSYNVAPPNWSFGQTYTGRQFR 239
           RTRWQ MSRNWGQNWQSN++L+GQSLSF+VTTS+G  VVSYNVAP  WSFGQTY+G QFR
Sbjct: 181 RTRWQAMSRNWGQNWQSNTHLDGQSLSFLVTTSDGRRVVSYNVAPAGWSFGQTYSGGQFR 240

Query: 240 Y 240
           Y
Sbjct: 241 Y 241

Source: Populus tomentosa

Species: Populus tomentosa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|356572744|ref|XP_003554526.1| PREDICTED: expansin-A15-like [Glycine max] Back     alignment and taxonomy information
>gi|224141413|ref|XP_002324067.1| hypothetical protein POPTRDRAFT_778530 [Populus trichocarpa] gi|222867069|gb|EEF04200.1| hypothetical protein POPTRDRAFT_778530 [Populus trichocarpa] Back     alignment and taxonomy information
>gi|225452857|ref|XP_002283741.1| PREDICTED: expansin-A1 [Vitis vinifera] gi|147864216|emb|CAN78812.1| hypothetical protein VITISV_012111 [Vitis vinifera] gi|296082937|emb|CBI22238.3| unnamed protein product [Vitis vinifera] Back     alignment and taxonomy information
>gi|255584815|ref|XP_002533125.1| Alpha-expansin 5 precursor, putative [Ricinus communis] gi|223527088|gb|EEF29270.1| Alpha-expansin 5 precursor, putative [Ricinus communis] Back     alignment and taxonomy information
>gi|429326522|gb|AFZ78601.1| expansin protein [Populus tomentosa] Back     alignment and taxonomy information
>gi|226001019|dbj|BAH36863.1| alpha expansin [Rosa hybrid cultivar] Back     alignment and taxonomy information
>gi|357501937|ref|XP_003621257.1| Alpha-expansin [Medicago truncatula] gi|355496272|gb|AES77475.1| Alpha-expansin [Medicago truncatula] Back     alignment and taxonomy information
>gi|224080161|ref|XP_002306037.1| hypothetical protein POPTRDRAFT_556331 [Populus trichocarpa] gi|222849001|gb|EEE86548.1| hypothetical protein POPTRDRAFT_556331 [Populus trichocarpa] Back     alignment and taxonomy information
>gi|357501939|ref|XP_003621258.1| Alpha-expansin [Medicago truncatula] gi|355496273|gb|AES77476.1| Alpha-expansin [Medicago truncatula] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query240
TAIR|locus:2087027255 EXPA5 "expansin A5" [Arabidops 0.912 0.858 0.777 3.2e-97
TAIR|locus:2056670253 EXPA15 "expansin A15" [Arabido 0.995 0.944 0.705 1.4e-94
TAIR|locus:2200625259 EXPA10 "expansin A10" [Arabido 0.970 0.899 0.717 7.8e-94
TAIR|locus:2007106275 EXPA1 "expansin A1" [Arabidops 0.975 0.850 0.714 3e-92
TAIR|locus:2161028255 EXPA14 "expansin A14" [Arabido 0.979 0.921 0.662 1.7e-89
TAIR|locus:2061918253 EXPA8 "expansin A8" [Arabidops 0.975 0.924 0.650 3.4e-84
TAIR|locus:2180182258 EXPA9 "expansin A9" [Arabidops 0.995 0.926 0.614 4.5e-82
TAIR|locus:2043240257 EXPA4 "expansin A4" [Arabidops 0.937 0.875 0.638 5.8e-82
TAIR|locus:2153569255 EXPA2 "expansin A2" [Arabidops 0.983 0.925 0.621 1.5e-81
TAIR|locus:2040686262 EXP3 [Arabidopsis thaliana (ta 0.995 0.912 0.598 6e-80
TAIR|locus:2087027 EXPA5 "expansin A5" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 966 (345.1 bits), Expect = 3.2e-97, P = 3.2e-97
 Identities = 171/220 (77%), Positives = 191/220 (86%)

Query:    22 GGWINAHATFYXXXXXXXXXXXXXXYGNLYSQGYGTNTAALSTALFNNGLSCGACFQIMC 81
             G WINAHATFY              YGNLYSQGYG  TAALSTALF+ GLSCGACF++MC
Sbjct:    36 GPWINAHATFYGGGDASGTMGGACGYGNLYSQGYGLETAALSTALFDQGLSCGACFELMC 95

Query:    82 ANDPQWCLRG-SIIVTATNFCPPGGWCDPPNHHFDLSQPVFQHIAQYRAGIVPVIYRRVR 140
              NDPQWC++G SI+VTATNFCPPGG CDPPNHHFDLSQP+++ IA Y++GI+PV+YRRVR
Sbjct:    96 VNDPQWCIKGRSIVVTATNFCPPGGACDPPNHHFDLSQPIYEKIALYKSGIIPVMYRRVR 155

Query:   141 CKRNGGIRFTINGHSYFNLVLITNVGGAGDVRAVSIKGSRTRWQPMSRNWGQNWQSNSYL 200
             CKR+GGIRFTINGHSYFNLVL+TNVGGAGDV +VS+KGSRT+WQ MSRNWGQNWQSNSYL
Sbjct:   156 CKRSGGIRFTINGHSYFNLVLVTNVGGAGDVHSVSMKGSRTKWQLMSRNWGQNWQSNSYL 215

Query:   201 NGQSLSFVVTTSNGHSVVSYNVAPPNWSFGQTYTGRQFRY 240
             NGQSLSFVVTTS+  SVVS+NVAPP WSFGQTYTG QFRY
Sbjct:   216 NGQSLSFVVTTSDRRSVVSFNVAPPTWSFGQTYTGGQFRY 255
GO:0005576 "extracellular region" evidence=ISM;IEA
GO:0009664 "plant-type cell wall organization" evidence=IEA
GO:0009826 "unidimensional cell growth" evidence=ISS;NAS
GO:0009828 "plant-type cell wall loosening" evidence=ISS;NAS
GO:0009831 "plant-type cell wall modification involved in multidimensional cell growth" evidence=ISS
TAIR|locus:2056670 EXPA15 "expansin A15" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2200625 EXPA10 "expansin A10" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2007106 EXPA1 "expansin A1" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2161028 EXPA14 "expansin A14" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2061918 EXPA8 "expansin A8" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2180182 EXPA9 "expansin A9" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2043240 EXPA4 "expansin A4" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2153569 EXPA2 "expansin A2" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2040686 EXP3 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

ID ?Name ?Annotated EC number ?Identity ?Query coverage ?Hit coverage ?RBH(Q2H) ?RBH(H2Q) ?
O80622EXP15_ARATHNo assigned EC number0.75800.99580.9446nono
Q38864EXPA5_ARATHNo assigned EC number0.84400.90410.8509yesno
O48818EXPA4_ARATHNo assigned EC number0.71490.90830.8482nono
Q9C554EXPA1_ARATHNo assigned EC number0.7680.99580.956nono
A2Y5R6EXPA4_ORYSINo assigned EC number0.69910.99160.9674N/Ano
O22874EXPA8_ARATHNo assigned EC number0.70370.9750.9249nono
Q40636EXPA2_ORYSJNo assigned EC number0.70790.90830.8685nono
Q9FMA0EXP14_ARATHNo assigned EC number0.72130.97910.9215nono
Q0DHB7EXPA4_ORYSJNo assigned EC number0.69910.99160.9674yesno
Q9LDR9EXP10_ARATHNo assigned EC number0.75400.98750.9518nono

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

No EC number assignment, probably not an enzyme!

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Your Input:
PtEXPA9
hypothetical protein (249 aa)
(Populus trichocarpa)
Predicted Functional Partners:
 
Sorry, there are no predicted associations at the current settings.
 

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query240
PLN00050247 PLN00050, PLN00050, expansin A; Provisional 1e-133
PLN00193256 PLN00193, PLN00193, expansin-A; Provisional 1e-113
smart0083787 smart00837, DPBB_1, Rare lipoprotein A (RlpA)-like 2e-45
pfam0135782 pfam01357, Pollen_allerg_1, Pollen allergen 2e-35
pfam0333077 pfam03330, DPBB_1, Rare lipoprotein A (RlpA)-like 2e-29
PLN03023247 PLN03023, PLN03023, Expansin-like B1; Provisional 2e-21
PLN03024125 PLN03024, PLN03024, Putative EG45-like domain cont 1e-05
>gnl|CDD|165628 PLN00050, PLN00050, expansin A; Provisional Back     alignment and domain information 
 Score =  375 bits (964), Expect = e-133
 Identities = 188/247 (76%), Positives = 206/247 (83%), Gaps = 9/247 (3%)

Query: 1   MALWVILCVGFLSLVSSVQGYG-GWINAHATFYGGGDASGTMGGACGYGNLYSQGYGTNT 59
           M       V  LS++  V+GYG GW  AHATFYGGGDASGTMGGACGYGNLYSQGYGTNT
Sbjct: 1   MECLGYTIVALLSILKIVEGYGSGWTGAHATFYGGGDASGTMGGACGYGNLYSQGYGTNT 60

Query: 60  AALSTALFNNGLSCGACFQIMCANDPQWCLRGSIIVTATNFCPP--------GGWCDPPN 111
           AALSTALFNNGLSCGACF+I C ND  WCL GSII+TATNFCPP        GGWC+PP 
Sbjct: 61  AALSTALFNNGLSCGACFEIKCVNDNIWCLPGSIIITATNFCPPNLALPNNDGGWCNPPQ 120

Query: 112 HHFDLSQPVFQHIAQYRAGIVPVIYRRVRCKRNGGIRFTINGHSYFNLVLITNVGGAGDV 171
            HFDLSQPVFQ IAQY+AGIVPV YRRV C+++GGIRFTINGHSYFNLVLITNVGGAGD+
Sbjct: 121 QHFDLSQPVFQKIAQYKAGIVPVQYRRVACRKSGGIRFTINGHSYFNLVLITNVGGAGDI 180

Query: 172 RAVSIKGSRTRWQPMSRNWGQNWQSNSYLNGQSLSFVVTTSNGHSVVSYNVAPPNWSFGQ 231
            AVSIKGS++ WQ MSRNWGQNWQSNSYLNGQ+LSF VTTS+G +V+S N AP NW+FGQ
Sbjct: 181 VAVSIKGSKSNWQAMSRNWGQNWQSNSYLNGQALSFKVTTSDGRTVISNNAAPSNWAFGQ 240

Query: 232 TYTGRQF 238
           TYTG QF
Sbjct: 241 TYTGMQF 247

Length = 247
>gnl|CDD|215097 PLN00193, PLN00193, expansin-A; Provisional Back     alignment and domain information
>gnl|CDD|129070 smart00837, DPBB_1, Rare lipoprotein A (RlpA)-like double-psi beta-barrel Back     alignment and domain information
>gnl|CDD|216453 pfam01357, Pollen_allerg_1, Pollen allergen Back     alignment and domain information
>gnl|CDD|217497 pfam03330, DPBB_1, Rare lipoprotein A (RlpA)-like double-psi beta-barrel Back     alignment and domain information
>gnl|CDD|215542 PLN03023, PLN03023, Expansin-like B1; Provisional Back     alignment and domain information
>gnl|CDD|178595 PLN03024, PLN03024, Putative EG45-like domain containing protein 1; Provisional Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 240
PLN00050247 expansin A; Provisional 100.0
PLN00193256 expansin-A; Provisional 100.0
PLN03023247 Expansin-like B1; Provisional 100.0
COG4305232 Endoglucanase C-terminal domain/subunit and relate 99.96
PLN03024125 Putative EG45-like domain containing protein 1; Pr 99.95
smart0083787 DPBB_1 Rare lipoprotein A (RlpA)-like double-psi b 99.9
PLN00115118 pollen allergen group 3; Provisional 99.9
PF0135782 Pollen_allerg_1: Pollen allergen; InterPro: IPR007 99.86
PF0333078 DPBB_1: Rare lipoprotein A (RlpA)-like double-psi 99.77
PF00967119 Barwin: Barwin family; InterPro: IPR001153 Barwin 99.14
PF07249119 Cerato-platanin: Cerato-platanin; InterPro: IPR010 98.35
TIGR00413208 rlpA rare lipoprotein A. This is a family of proka 97.88
COG0797233 RlpA Lipoproteins [Cell envelope biogenesis, outer 97.51
PRK10672361 rare lipoprotein A; Provisional 97.13
PF02015201 Glyco_hydro_45: Glycosyl hydrolase family 45; Inte 90.07
>PLN00050 expansin A; Provisional Back     alignment and domain information 
Probab=100.00  E-value=2.1e-67  Score=457.65  Aligned_cols=238  Identities=78%  Similarity=1.357  Sum_probs=213.8

Q ss_pred             ChhHHHHHHHHHHhhhhhc-cCCCceEEEEEEeCCCCCCCCCccccCCCcCCCCCCCCeEEEechhhcCCCCCCCceEEE
Q 026331            1 MALWVILCVGFLSLVSSVQ-GYGGWINAHATFYGGGDASGTMGGACGYGNLYSQGYGTNTAALSTALFNNGLSCGACFQI   79 (240)
Q Consensus         1 ~~~~~~~~~~~~~l~~~~~-~~~~~~~g~aT~Y~~~~~~~~~~GaCg~~~~~~~~~~~~~aA~s~~~~~~g~~CG~C~~v   79 (240)
                      |.-|+--++.||...-... .+.+|..++|||||.+++.++.+|||||+++..++++.++||+|+.+|++|++||+||||
T Consensus         1 ~~~~~~~~~~~~~~~~~~~~~~~~W~~a~AT~Yg~~dg~gt~gGACGYg~l~~~~~g~~~AAls~~lf~~G~~CGaCyeV   80 (247)
T PLN00050          1 MECLGYTIVALLSILKIVEGYGSGWTGAHATFYGGGDASGTMGGACGYGNLYSQGYGTNTAALSTALFNNGLSCGACFEI   80 (247)
T ss_pred             CcchhhhHHHHhhhheeccccCCCccccEEEEcCCCCCCCCCCcccCCCCccccCCCceeeeccHhHccCCccccceEEE
Confidence            3344444445454333332 236899999999999888888999999999887889999999999999999999999999


Q ss_pred             EEcCCCCcccCCeEEEEEeCCCCC--------CCCCCCCCCceeeCHHHHHhhchhcCCccceEEEEeeeeeCCceeEEE
Q 026331           80 MCANDPQWCLRGSIIVTATNFCPP--------GGWCDPPNHHFDLSQPVFQHIAQYRAGIVPVIYRRVRCKRNGGIRFTI  151 (240)
Q Consensus        80 ~~~~~~~~C~~g~v~v~V~D~Cp~--------~~~C~~~~~~lDLs~~aF~~la~~~~G~~~i~w~~V~C~~~g~i~~~~  151 (240)
                      +|.+++..|.+++|+|+|||+||+        ++||.+++.|||||..||.+||..+.|+++|+||||||+++|+|+|++
T Consensus        81 ~C~~~~~~C~~gsV~V~itd~CP~~~~~~~~~~gwC~~~~~hFDLS~~AF~~iA~~~aGii~V~yRRVpC~~~G~i~f~v  160 (247)
T PLN00050         81 KCVNDNIWCLPGSIIITATNFCPPNLALPNNDGGWCNPPQQHFDLSQPVFQKIAQYKAGIVPVQYRRVACRKSGGIRFTI  160 (247)
T ss_pred             EcCCCCcccCCCcEEEEEecCCCCCcCcCccCCCcCCCCCcccccCHHHHHHHhhhcCCeeeeEEEEecCcCCCCeEEEE
Confidence            997766679888999999999996        468998899999999999999999999999999999999999999999


Q ss_pred             cCccceEEEEEEeecCCcCeEEEEEEcCCCceeEcCCCCCceEEECCCCCCcceEEEEEecCCeEEEEccccCCCCCCCc
Q 026331          152 NGHSYFNLVLITNVGGAGDVRAVSIKGSRTRWQPMSRNWGQNWQSNSYLNGQSLSFVVTTSNGHSVVSYNVAPPNWSFGQ  231 (240)
Q Consensus       152 ~~s~~w~av~v~n~~g~~~I~sVev~~~g~~W~~m~r~~gn~W~~~~~~~g~p~~vRvT~~~G~~vv~~~vip~~w~~g~  231 (240)
                      ++++||++|+|.|++|+++|++|||+++++.|++|+|+||++|++++++.+.||+||||+.+|+++++.||||++|++|+
T Consensus       161 ~g~sy~~~vlv~nv~G~gdi~~V~ikg~~~~W~~M~R~wGa~W~~~~~l~g~~lsfRvt~~~G~~~~~~~V~Pa~W~~G~  240 (247)
T PLN00050        161 NGHSYFNLVLITNVGGAGDIVAVSIKGSKSNWQAMSRNWGQNWQSNSYLNGQALSFKVTTSDGRTVISNNAAPSNWAFGQ  240 (247)
T ss_pred             cCCceeEEEEEEEcCCCccEEEEEEecCCCCeeECccccCceeEccCCCCCCcEEEEEEecCCcEEEECceeCCCCCCCC
Confidence            99899999999999999999999999877789999999999999988777779999999999999999999999999999


Q ss_pred             EEecCCc
Q 026331          232 TYTGRQF  238 (240)
Q Consensus       232 ~y~~~qf  238 (240)
                      +|++.||
T Consensus       241 ty~~~~f  247 (247)
T PLN00050        241 TYTGMQF  247 (247)
T ss_pred             eEecCcC
Confidence            9999987

>PLN00193 expansin-A; Provisional Back     alignment and domain information
>PLN03023 Expansin-like B1; Provisional Back     alignment and domain information
>COG4305 Endoglucanase C-terminal domain/subunit and related proteins [Carbohydrate transport and metabolism] Back     alignment and domain information
>PLN03024 Putative EG45-like domain containing protein 1; Provisional Back     alignment and domain information
>smart00837 DPBB_1 Rare lipoprotein A (RlpA)-like double-psi beta-barrel Back     alignment and domain information
>PLN00115 pollen allergen group 3; Provisional Back     alignment and domain information
>PF01357 Pollen_allerg_1: Pollen allergen; InterPro: IPR007117 Expansins are unusual proteins that mediate cell wall extension in plants [] Back     alignment and domain information
>PF03330 DPBB_1: Rare lipoprotein A (RlpA)-like double-psi beta-barrel; InterPro: IPR009009 Beta barrels are commonly observed in protein structures Back     alignment and domain information
>PF00967 Barwin: Barwin family; InterPro: IPR001153 Barwin is a basic protein isolated from aqueous extracts of barley seeds Back     alignment and domain information
>PF07249 Cerato-platanin: Cerato-platanin; InterPro: IPR010829 Cerato-platanin (CP) is the first member of the cerato-platanin family Back     alignment and domain information
>TIGR00413 rlpA rare lipoprotein A Back     alignment and domain information
>COG0797 RlpA Lipoproteins [Cell envelope biogenesis, outer membrane] Back     alignment and domain information
>PRK10672 rare lipoprotein A; Provisional Back     alignment and domain information
>PF02015 Glyco_hydro_45: Glycosyl hydrolase family 45; InterPro: IPR000334 O-Glycosyl hydrolases 3 Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query240
2hcz_X245 Crystal Structure Of Expb1 (Zea M 1), A Beta-Expans 8e-17
1n10_A241 Crystal Structure Of Phl P 1, A Major Timothy Grass 2e-14
>pdb|2HCZ|X Chain X, Crystal Structure Of Expb1 (Zea M 1), A Beta-Expansin And Group-1 Pollen Allergen From Maize Length = 245 Back     alignment and structure 
Iteration: 1

 Score = 83.6 bits (205), Expect = 8e-17,   Method: Compositional matrix adjust.
 Identities = 65/231 (28%), Positives = 101/231 (43%), Gaps = 26/231 (11%)
Query: 22  GGWINAHATFYXXXXXXXXXXXXXXYG--NLYSQGYGTNTAALSTALFNNGLSCGACFQI 79
           G W+ A AT+Y               G  N+    Y   TA  +  +F +G  CG+C+++
Sbjct: 17  GKWLTARATWYGQPNGAGAPDNGGACGIKNVNLPPYSGMTACGNVPIFKDGKGCGSCYEV 76
Query: 80  MCANDPQWCLRGSIIV--TATNFCPPGGWCDPPNHHFDLSQPVFQHIAQ-------YRAG 130
            C   P+ C    + V  T  N+ P         +HFDLS   F  +A+          G
Sbjct: 77  RCKEKPE-CSGNPVTVYITDMNYEPIA------PYHFDLSGKAFGSLAKPGLNDKIRHCG 129
Query: 131 IVPVIYRRVRCKRNGGIRFTINGHSYFN----LVLITNVGGAGDVRAVSIKGSRT-RWQP 185
           I+ V +RRVRCK   G +   +     N     VL+  V   GD+  + I+   +  W+P
Sbjct: 130 IMDVEFRRVRCKYPAGQKIVFHIEKGCNPNYLAVLVKYVADDGDIVLMEIQDKLSAEWKP 189
Query: 186 MSRNWGQNWQSNS--YLNGQSLSFVVTTSNGHSVVSYNVAPPNWSFGQTYT 234
           M  +WG  W+ ++   L G   S  +T+ +G  V++ +V P NW     YT
Sbjct: 190 MKLSWGAIWRMDTAKALKG-PFSIRLTSESGKKVIAKDVIPANWRPDAVYT 239
>pdb|1N10|A Chain A, Crystal Structure Of Phl P 1, A Major Timothy Grass Pollen Allergen Length = 241 Back     alignment and structure

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query240
2hcz_X245 Beta-expansin 1A; domain 1 is A beta barrel and do 2e-72
1n10_A241 PHL P I, pollen allergen PHL P 1; plant allergen, 5e-70
3d30_A208 YOAJ, expansin like protein; peptidoglycan associa 4e-63
1bmw_A96 PHL P II, pollen allergen PHL P2; allergy, immunog 3e-31
2jnz_A108 PHL P 3 allergen; timothy grass pollen; NMR {Phleu 6e-31
3ft1_A100 PHL P 3 allergen; beta-barrel; 1.79A {Phleum prate 3e-30
1wc2_A181 Endoglucanase; hydrolase, cellulase, cellulose, do 1e-23
>2hcz_X Beta-expansin 1A; domain 1 is A beta barrel and domain 2 is A immunoglobulin L sandwich, allergen; HET: NAG MAN FCA; 2.75A {Zea mays} Length = 245 Back     alignment and structure
 Score =  220 bits (560), Expect = 2e-72
 Identities = 68/234 (29%), Positives = 109/234 (46%), Gaps = 23/234 (9%)

Query: 22  GGWINAHATFYGGGDASGT--MGGACGYGNLYSQGYGTNTAALSTALFNNGLSCGACFQI 79
           G W+ A AT+YG  + +G    GGACG  N+    Y   TA  +  +F +G  CG+C+++
Sbjct: 17  GKWLTARATWYGQPNGAGAPDNGGACGIKNVNLPPYSGMTACGNVPIFKDGKGCGSCYEV 76

Query: 80  MCANDPQWCLRG-SIIVTATNFCPPGGWCDPPNHHFDLSQPVFQHIAQ-------YRAGI 131
            C   P+      ++ +T  N+ P         +HFDLS   F  +A+          GI
Sbjct: 77  RCKEKPECSGNPVTVYITDMNYEP------IAPYHFDLSGKAFGSLAKPGLNDKIRHCGI 130

Query: 132 VPVIYRRVRCKRNGGIRFTINGHSYFN----LVLITNVGGAGDVRAVSIKGSRT-RWQPM 186
           + V +RRVRCK   G +   +     N     VL+  V   GD+  + I+   +  W+PM
Sbjct: 131 MDVEFRRVRCKYPAGQKIVFHIEKGCNPNYLAVLVKYVADDGDIVLMEIQDKLSAEWKPM 190

Query: 187 SRNWGQNWQSNSYLN-GQSLSFVVTTSNGHSVVSYNVAPPNWSFGQTY-TGRQF 238
             +WG  W+ ++        S  +T+ +G  V++ +V P NW     Y +  QF
Sbjct: 191 KLSWGAIWRMDTAKALKGPFSIRLTSESGKKVIAKDVIPANWRPDAVYTSNVQF 244
>1n10_A PHL P I, pollen allergen PHL P 1; plant allergen, expansin, immunoglobulin-like fold, PSI beta barrel, structural genomics; HET: NAG; 2.90A {Phleum pratense} SCOP: b.7.3.1 b.52.1.3 Length = 241 Back     alignment and structure
>3d30_A YOAJ, expansin like protein; peptidoglycan associated protei unknown function, MLTA, bacteria autolysis, peptidoglycan-B protein; 1.90A {Bacillus subtilis} PDB: 2bh0_A Length = 208 Back     alignment and structure
>1bmw_A PHL P II, pollen allergen PHL P2; allergy, immunoglobulins, immunology,; NMR {Phleum pratense} SCOP: b.7.3.1 PDB: 1who_A 1whp_A 2vxq_A Length = 96 Back     alignment and structure
>2jnz_A PHL P 3 allergen; timothy grass pollen; NMR {Phleum pratense} Length = 108 Back     alignment and structure
>3ft1_A PHL P 3 allergen; beta-barrel; 1.79A {Phleum pratense} PDB: 3ft9_A Length = 100 Back     alignment and structure
>1wc2_A Endoglucanase; hydrolase, cellulase, cellulose, double-PSI fold, glycoside hydrolase; 1.2A {Mytilus edulis} SCOP: b.52.1.1 Length = 181 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query240
1n10_A241 PHL P I, pollen allergen PHL P 1; plant allergen, 100.0
2hcz_X245 Beta-expansin 1A; domain 1 is A beta barrel and do 100.0
3d30_A208 YOAJ, expansin like protein; peptidoglycan associa 100.0
1wc2_A181 Endoglucanase; hydrolase, cellulase, cellulose, do 99.96
3ft1_A100 PHL P 3 allergen; beta-barrel; 1.79A {Phleum prate 99.95
2jnz_A108 PHL P 3 allergen; timothy grass pollen; NMR {Phleu 99.93
1bmw_A96 PHL P II, pollen allergen PHL P2; allergy, immunog 99.91
1bw3_A125 Barwin, basic barley SEED protein; lectin; NMR {Ho 99.7
4avr_A95 PA4485; unknown function, GRAM-negative bacteria, 99.33
2kqa_A129 Cerato-platanin; elicitor, secreted, toxin; NMR {C 98.24
3m3g_A120 EPL1 protein; fungal, plant defense, fungus, polys 98.13
3suk_A125 Cerato-platanin-like protein; double PSI beta barr 98.11
3suj_A127 Cerato-platanin 1; double PSI beta barrel, unknown 98.08
3sul_A122 Cerato-platanin-like protein; double PSI beta barr 98.07
3sum_A136 Cerato-platanin-like protein; double PSI beta barr 97.93
2eng_A210 Endoglucanase V; cellulose degradation, hydrolase 94.17
>1n10_A PHL P I, pollen allergen PHL P 1; plant allergen, expansin, immunoglobulin-like fold, PSI beta barrel, structural genomics; HET: NAG; 2.90A {Phleum pratense} SCOP: b.7.3.1 b.52.1.3 Back     alignment and structure
Probab=100.00  E-value=2.1e-63  Score=432.58  Aligned_cols=213  Identities=30%  Similarity=0.611  Sum_probs=189.0

Q ss_pred             hccCCCceEEEEEEeCCCCCCCC--CccccCCCcCCCCCCCCeEEEechhhcCCCCCCCceEEEEEcCCCCcccCCeEEE
Q 026331           18 VQGYGGWINAHATFYGGGDASGT--MGGACGYGNLYSQGYGTNTAALSTALFNNGLSCGACFQIMCANDPQWCLRGSIIV   95 (240)
Q Consensus        18 ~~~~~~~~~g~aT~Y~~~~~~~~--~~GaCg~~~~~~~~~~~~~aA~s~~~~~~g~~CG~C~~v~~~~~~~~C~~g~v~v   95 (240)
                      +...++|+.|+||||+++++.++  .+|||||++++.+|++.++||+++.+|++|+.||+||||+|.+++ .|.+++|+|
T Consensus        13 ~~~~~~w~~g~AT~Yg~~~~~gt~~~gGACGyg~~~~~~~g~~~aAls~~lf~~G~~CG~CyeV~c~~~~-~C~~~~v~V   91 (241)
T 1n10_A           13 ATYGDKWLDAKSTWYGKPTGAGPKDNGGACGYKDVDKPPFSGMTGCGNTPIFKSGRGCGSCFEIKCTKPE-ACSGEPVVV   91 (241)
T ss_dssp             CBCCCSCEEEEEEEEC----------CCTTCCCCTTSTTTTTCEEEECHHHHGGGTTSSCEEEEEECSST-TBCSCCEEE
T ss_pred             CcccCCceeeEEEEeCCCCCCCcCCCCeeCCCCCcCcCCCCcEEEEeCHHHccCcccCCCeEEEEeCCCC-ccCCCCEEE
Confidence            33457899999999998876666  789999999887889999999999999999999999999997654 598889999


Q ss_pred             EEeCCCCCCCCCCCCCCceeeCHHHHHhhch-------hcCCccceEEEEeeeeeCC--ceeEEEc--CccceEEEEEEe
Q 026331           96 TATNFCPPGGWCDPPNHHFDLSQPVFQHIAQ-------YRAGIVPVIYRRVRCKRNG--GIRFTIN--GHSYFNLVLITN  164 (240)
Q Consensus        96 ~V~D~Cp~~~~C~~~~~~lDLs~~aF~~la~-------~~~G~~~i~w~~V~C~~~g--~i~~~~~--~s~~w~av~v~n  164 (240)
                      +|||+|+    |.+++.|||||+.||.+||+       ++.|+++|+||+|+|+++|  +|+|+++  +++||++|||+|
T Consensus        92 ~VtD~C~----C~~~~~hfDLS~~AF~~iA~~g~~~~L~~~Gii~V~yrrV~C~~~gg~~i~f~v~~Gs~~~~~~vlv~n  167 (241)
T 1n10_A           92 HITDDNE----EPIAPYHFDLSGHAFGAMAKKGDEQKLRSAGELELQFRRVKCKYPEGTKVTFHVEKGSNPNYLALLVKY  167 (241)
T ss_dssp             EEEEECS----SCSSSSEEEEEHHHHHTTBSTTCHHHHHTTCSEEEEEEECCCCCCTTCCCEEEECTTCBTTEEEEEEEC
T ss_pred             EEeEecC----CCCCCcceecCHHHHHHhhccCcccccccCCEEEEEEEEEeCCCCCCCceEEEEcCCCCcceEEEEEEe
Confidence            9999996    86667999999999999998       7899999999999999984  8999998  589999999999


Q ss_pred             ecCCcCeEEEEEEcCC-CceeEcCCCCCceEEECCC--CCCcceEEEEEecCCeEEEEccccCCCCCCCcEEecC
Q 026331          165 VGGAGDVRAVSIKGSR-TRWQPMSRNWGQNWQSNSY--LNGQSLSFVVTTSNGHSVVSYNVAPPNWSFGQTYTGR  236 (240)
Q Consensus       165 ~~g~~~I~sVev~~~g-~~W~~m~r~~gn~W~~~~~--~~g~p~~vRvT~~~G~~vv~~~vip~~w~~g~~y~~~  236 (240)
                      +++.++|++|||++++ +.|++|+|+|||+|++++.  +.+ ||+||||+.+|++|+++||||++|++|++|+++
T Consensus       168 ~~g~g~V~~V~ik~~~~~~W~~m~r~wG~~W~~~~~~~l~g-pls~RvT~~~G~~v~~~nViP~~w~~g~ty~~~  241 (241)
T 1n10_A          168 VNGDGDVVAVDIKEKGKDKWIELKESWGAIWRIDTPDKLTG-PFTVRYTTEGGTKTEAEDVIPEGWKADTSYESK  241 (241)
T ss_dssp             CCCSSCEEEEEEEETTCCCCEECBCCTTTCEEEECSSCCCS-CEEEEEEESSSCEEEEEEEECSSCCSSEEEEC-
T ss_pred             cCCCCCEEEEEEEeCCCCCeEECccCcCcEEEeCCCCCCCC-CEEEEEEEeCCcEEEEccccCCCCCCCCEEeCC
Confidence            9988999999999987 5899999999999999875  667 999999999999999999999999999999974
>2hcz_X Beta-expansin 1A; domain 1 is A beta barrel and domain 2 is A immunoglobulin L sandwich, allergen; HET: NAG MAN FCA; 2.75A {Zea mays} Back     alignment and structure
>3d30_A YOAJ, expansin like protein; peptidoglycan associated protei unknown function, MLTA, bacteria autolysis, peptidoglycan-B protein; 1.90A {Bacillus subtilis} PDB: 2bh0_A Back     alignment and structure
>1wc2_A Endoglucanase; hydrolase, cellulase, cellulose, double-PSI fold, glycoside hydrolase; 1.2A {Mytilus edulis} SCOP: b.52.1.1 Back     alignment and structure
>3ft1_A PHL P 3 allergen; beta-barrel; 1.79A {Phleum pratense} SCOP: b.7.3.0 PDB: 3ft9_A Back     alignment and structure
>2jnz_A PHL P 3 allergen; timothy grass pollen; NMR {Phleum pratense} Back     alignment and structure
>1bmw_A PHL P II, pollen allergen PHL P2; allergy, immunoglobulins, immunology,; NMR {Phleum pratense} SCOP: b.7.3.1 PDB: 1who_A 1whp_A 2vxq_A Back     alignment and structure
>1bw3_A Barwin, basic barley SEED protein; lectin; NMR {Hordeum vulgare} SCOP: b.52.1.2 PDB: 1bw4_A Back     alignment and structure
>4avr_A PA4485; unknown function, GRAM-negative bacteria, infectious disease structure-based inhibitor design; 1.08A {Pseudomonas aeruginosa PA01} Back     alignment and structure
>2kqa_A Cerato-platanin; elicitor, secreted, toxin; NMR {Ceratocystis platani} Back     alignment and structure
>3m3g_A EPL1 protein; fungal, plant defense, fungus, polysaccharide-binding protei; 1.39A {Hypocrea virens} Back     alignment and structure
>3suk_A Cerato-platanin-like protein; double PSI beta barrel, unknown function; 1.34A {Moniliophthora perniciosa} Back     alignment and structure
>3suj_A Cerato-platanin 1; double PSI beta barrel, unknown function; 1.34A {Moniliophthora perniciosa} Back     alignment and structure
>3sul_A Cerato-platanin-like protein; double PSI beta barrel, unknown function; 1.63A {Moniliophthora perniciosa} Back     alignment and structure
>3sum_A Cerato-platanin-like protein; double PSI beta barrel, unknown function; 1.87A {Moniliophthora perniciosa} Back     alignment and structure
>2eng_A Endoglucanase V; cellulose degradation, hydrolase (endoglucanase), glycosidase; 1.50A {Humicola insolens} SCOP: b.52.1.1 PDB: 3eng_A* 4eng_A* 1hd5_A 1oa7_A* 1oa9_A 1l8f_A Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 240
d1n10a2143 b.52.1.3 (A:1003-1145) Pollen allergen PHL P 1 N-t 4e-45
d1wc2a1180 b.52.1.1 (A:1-180) Endoglucanase (CMCase) {Blue mu 7e-44
d1n10a195 b.7.3.1 (A:1146-1240) PHL P 1 C-terminal domain {T 3e-33
d1whoa_94 b.7.3.1 (A:) PHL P 2 {Timothy grass (Phleum praten 4e-28
>d1n10a2 b.52.1.3 (A:1003-1145) Pollen allergen PHL P 1 N-terminal domain {Timothy grass (Phleum pratense) [TaxId: 15957]} Length = 143 Back     information, alignment and structure

class: All beta proteins
fold: Double psi beta-barrel
superfamily: Barwin-like endoglucanases
family: Pollen allergen PHL P 1 N-terminal domain
domain: Pollen allergen PHL P 1 N-terminal domain
species: Timothy grass (Phleum pratense) [TaxId: 15957]

 Score =  145 bits (368), Expect = 4e-45
 Identities = 37/130 (28%), Positives = 58/130 (44%), Gaps = 6/130 (4%)

Query: 22  GGWINAHATFYGGGDASGTM--GGACGYGNLYSQGYGTNTAALSTALFNNGLSCGACFQI 79
             W++A +T+YG    +G    GGACGY ++    +   T   +T +F +G  CG+CF+I
Sbjct: 15  DKWLDAKSTWYGKPTGAGPKDNGGACGYKDVDKPPFSGMTGCGNTPIFKSGRGCGSCFEI 74

Query: 80  MCANDPQWCLRGSIIVTATNFCPPG---GWCDPPNHHFDLSQPVFQHIAQYRAGIVPVIY 136
            C   P+ C    ++V  T+           D   H F              AG + + +
Sbjct: 75  KC-TKPEACSGEPVVVHITDDNEEPIAPYHFDLSGHAFGAMAKKGDEQKLRSAGELELQF 133

Query: 137 RRVRCKRNGG 146
           RRV+CK   G
Sbjct: 134 RRVKCKYPEG 143
>d1wc2a1 b.52.1.1 (A:1-180) Endoglucanase (CMCase) {Blue mussel (Mytilus edulis) [TaxId: 6550]} Length = 180 Back     information, alignment and structure
>d1n10a1 b.7.3.1 (A:1146-1240) PHL P 1 C-terminal domain {Timothy grass (Phleum pratense) [TaxId: 15957]} Length = 95 Back     information, alignment and structure
>d1whoa_ b.7.3.1 (A:) PHL P 2 {Timothy grass (Phleum pratense) [TaxId: 15957]} Length = 94 Back     information, alignment and structure

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query240
d1n10a2143 Pollen allergen PHL P 1 N-terminal domain {Timothy 100.0
d1wc2a1180 Endoglucanase (CMCase) {Blue mussel (Mytilus eduli 99.97
d1n10a195 PHL P 1 C-terminal domain {Timothy grass (Phleum p 99.95
d1whoa_94 PHL P 2 {Timothy grass (Phleum pratense) [TaxId: 1 99.93
d1bw3a_125 Barwin {Barley (Hordeum vulgare) [TaxId: 4513]} 98.76
d2enga_210 Endoglucanase V (Eng V) {Humicola insolens [TaxId: 91.07
>d1n10a2 b.52.1.3 (A:1003-1145) Pollen allergen PHL P 1 N-terminal domain {Timothy grass (Phleum pratense) [TaxId: 15957]} Back     information, alignment and structure
class: All beta proteins
fold: Double psi beta-barrel
superfamily: Barwin-like endoglucanases
family: Pollen allergen PHL P 1 N-terminal domain
domain: Pollen allergen PHL P 1 N-terminal domain
species: Timothy grass (Phleum pratense) [TaxId: 15957]

Probab=100.00  E-value=1.5e-35  Score=237.00  Aligned_cols=120  Identities=33%  Similarity=0.663  Sum_probs=101.6

Q ss_pred             CCCceEEEEEEeCCCCCCC--CCccccCCCcCCCCCCCCeEEEechhhcCCCCCCCceEEEEEcCCCCcccCCeEEEEEe
Q 026331           21 YGGWINAHATFYGGGDASG--TMGGACGYGNLYSQGYGTNTAALSTALFNNGLSCGACFQIMCANDPQWCLRGSIIVTAT   98 (240)
Q Consensus        21 ~~~~~~g~aT~Y~~~~~~~--~~~GaCg~~~~~~~~~~~~~aA~s~~~~~~g~~CG~C~~v~~~~~~~~C~~g~v~v~V~   98 (240)
                      .++|++|+||||+.+++.+  ..+|||||++++..|++.++||+|+.+|++|..||+||||+|.+ +..|.+++|+|+||
T Consensus        14 ~~~w~~g~AT~Yg~~~~~~~~~~gGACGyg~~~~~p~g~~~aAls~~l~~~g~~CG~cyev~c~~-~~~c~~~sv~V~vt   92 (143)
T d1n10a2          14 GDKWLDAKSTWYGKPTGAGPKDNGGACGYKDVDKPPFSGMTGCGNTPIFKSGRGCGSCFEIKCTK-PEACSGEPVVVHIT   92 (143)
T ss_dssp             CCSCEEEEEEEEC----------CCTTCCCCTTSTTTTTCEEEECHHHHGGGTTSSCEEEEEECS-STTBCSCCEEEEEE
T ss_pred             CCCcEeeEEeEeCCCCCCCCCCCcccCCCCCcccCCCcceEEEeCHhHccCCCcCCcceEeEcCC-CCcccCCCEEEEEE
Confidence            4899999999999876644  34699999998877889999999999999999999999999975 45798889999999


Q ss_pred             CCCCCCCCCCCCCCceeeCHHHHHhhchh-------cCCccceEEEEeeeeeCC
Q 026331           99 NFCPPGGWCDPPNHHFDLSQPVFQHIAQY-------RAGIVPVIYRRVRCKRNG  145 (240)
Q Consensus        99 D~Cp~~~~C~~~~~~lDLs~~aF~~la~~-------~~G~~~i~w~~V~C~~~g  145 (240)
                      |.||+   |. +.+|||||+.||.+||+.       +.|+++|+||+|+|.++|
T Consensus        93 d~c~~---~~-~~~hfDLS~~AF~~iA~~~~~~~~~~~Giv~V~yRrV~C~~~g  142 (143)
T d1n10a2          93 DDNEE---PI-APYHFDLSGHAFGAMAKKGDEQKLRSAGELELQFRRVKCKYPE  142 (143)
T ss_dssp             EECSS---CS-SSSEEEEEHHHHHTTBSTTCHHHHHTTCSEEEEEEECCCCCCT
T ss_pred             ecccC---CC-CCccccCCHHHHhhhccccchhhheecCccceEEEEEeccCCC
Confidence            99995   33 468999999999999974       679999999999999986
>d1wc2a1 b.52.1.1 (A:1-180) Endoglucanase (CMCase) {Blue mussel (Mytilus edulis) [TaxId: 6550]} Back     information, alignment and structure
>d1n10a1 b.7.3.1 (A:1146-1240) PHL P 1 C-terminal domain {Timothy grass (Phleum pratense) [TaxId: 15957]} Back     information, alignment and structure
>d1whoa_ b.7.3.1 (A:) PHL P 2 {Timothy grass (Phleum pratense) [TaxId: 15957]} Back     information, alignment and structure
>d1bw3a_ b.52.1.2 (A:) Barwin {Barley (Hordeum vulgare) [TaxId: 4513]} Back     information, alignment and structure
>d2enga_ b.52.1.1 (A:) Endoglucanase V (Eng V) {Humicola insolens [TaxId: 34413]} Back     information, alignment and structure