Citrus Sinensis ID: 026337

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240
Protein Sequence
MRFPVRPGFGTVGKKCVVRANHFMVQLAERDIHHYDVSITPEVTSKKINRQIISQLINLYRLTHLGERMPAYDGMKSIYTAGPLPFESKEFIIKLPDSDPRPSSSTRPRRERQFRVVIRLASKPDLYTLQQFLLRRHFEAPYEVIQVLDVVLRAAPSEKHTVVGRSFFSTDLGPVGQLGDGVEYWRGYFQSLRPTQMGLSLNIDVSARSFYEPILVTEFVQYYCRDLSRPLSDQVRLKVY
Secondary Structure (PSIPRED)
ccccccccccccccEEEEEEEEEEEEcccccEEEEEEEEccccccHHHHHHHHHHHHHHHHHHHcccccEEEcccEEEEEccccccccccEEEEccccccccccccccccccEEEEEEEEcccccHHHHHHHHccccccccHHHHHHHHHHHHccccccccccccccccccccccccccccEEEEEEEEEEEEccccEEEEEEEcccEEEEccccHHHHHHHHHHcccccccHHcccccc
Secondary Structure Prediction (SSPRO)
ccccccccccccccEEEEEEEEEEEEcccccEEEEEEEEcccccccHHHHHHHHHHHHHHHHHHHccccccccccccEEccccccccEEEEEEEEcccccccccccccccccEEEEEEEEEEEccHHHHHHHHccccccccHHHHHHHHHHHHHcccccccEcccccccccccccccccccEEEEccccccccccccccEEEEEccHHHHcccHHHHHHHHHHHHcccccccccccEEEc
Coil and Loop (DISEMBL)
mrfpvrpgfgtvgkkCVVRANHFMVQLAERdihhydvsitpevtskKINRQIISQLINLYRLThlgermpaydgmksiytagplpfeskefiiklpdsdprpssstrprreRQFRVVIRLASKPDLYTLQQFLLRRHFEAPYEVIQVLDVVLraapsekhtvvgrsffstdlgpvgqlgdgvEYWRGYFqslrptqmglslnidvsarsfyepiLVTEFVQYYCRdlsrplsdqvrlkvy
Flexible Loop (DISEMBL)
mrfpvrpgfgtvgkkcvVRANHFMVQLAerdihhydvsitpevtskkinRQIISQLINLYRLTHLGERMPAYDGMKSIYTAGPLPFESKEFIIKLpdsdprpssstrprrerqfrvvirlaskpdlYTLQQFLLRRHFEAPYEVIQVLDVVLRAAPSEKhtvvgrsffstdlgpvgQLGDGVEYWRGYFQSLRPTQMGLSLNIDVSARSFYEPILVTEFVQYYCRdlsrplsdqvrlkvy
Low Complexity Region (SEG)
MRFPVRPGFGTVGKKCVVRANHFMVQLAERDIHHYDVSITPEVTSKKINRQIISQLINLYRLTHLGERMPAYDGMKSIYTAGPLPFESKEFIIKLpdsdprpssstrprrERQFRVVIRLASKPDLYTLQQFLLRRHFEAPYEVIQVLDVVLRAAPSEKHTVVGRSFFSTDLGPVGQLGDGVEYWRGYFQSLRPTQMGLSLNIDVSARSFYEPILVTEFVQYYCRDLSRPLSDQVRLKVY
Disordered region (IsUnstruct)
*******GFGTVGKKCVVRANHFMVQLAERDIHHYDVSITPEVTSKKINRQIISQLINLYRLTHLGERMPAYDGMKSIYTAGPLPFESKEFIIK*******************FRVVIRLASKPDLYTLQQFLLRRHFEAPYEVIQVLDVVLRAAPSEKHTVVGRSFFSTDLGPVGQLGDGVEYWRGYFQSLRPTQMGLSLNIDVSARSFYEPILVTEFVQYYCRDLS************
Disordered Region (DISOPRED)
MRFPVRPGFGTVGKKCVVRANHFMVQLAERDIHHYDVSITPEVTSKKINRQIISQLINLYRLTHLGERMPAYDGMKSIYTAGPLPFESKEFIIKLPDSDP***********RQFRVVIRLASKPDLYTLQQFLLRRHFEAPYEVIQVLDVVLRAAPSEKHTVVGRSFFSTDLGPVGQLGDGVEYWRGYFQSLRPTQMGLSLNIDVSARSFYEPILVTEFVQYYCRDLSRPLSD*VRLKVY
Disordered Region (DISEMBL)
MRFPVRPGFGTVGKKCVVRANHFMVQLAERDIHHYDVSITPEVTSKKINRQIISQLINLYRLTHLGERMPAYDGMKSIYTAGPLPFESKEFIIKLPD*************ERQFRVVIRLASKPDLYTLQQFLLRRHFEAPYEVIQVLDVVLRAAPSEKHTVVGRSFFSTDLGPVGQLGDGVEYWRGYFQSLRPTQMGLSLNIDVSARSFYEPILVTEFVQYYCRDLSRPLSDQVRLKVY
Disordered Region (DISPRO)
MRFPVRPGFGTVGKKCVVRANHFMVQLAERDIHHYDVSITPEVTSKKINRQIISQLINLYRLTHLGERMPAYDGMKSIYTAGPLPFESKEFIIKLPDS**********RRERQFRVVIRLASKPDLYTLQQFLLRRHFEAPYEVIQVLDVVLRAAPSEKHTVVGRSFFSTDLGPVGQLGDGVEYWRGYFQSLRPTQMGLSLNIDVSARSFYEPILVTEFVQYYCRDLSRPLSDQVRLKVY
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MRFPVRPGFGTVGKKCVVRANHFMVQLAERDIHHYDVSITPEVTSKKINRQIISQLINLYRLTHLGERMPAYDGMKSIYTAGPLPFESKEFIIKLPDSDPRPSSSTRPRRERQFRVVIRLASKPDLYTLQQFLLRRHFEAPYEVIQVLDVVLRAAPSEKHTVVGRSFFSTDLGPVGQLGDGVEYWRGYFQSLRPTQMGLSLNIDVSARSFYEPILVTEFVQYYCRDLSRPLSDQVRLKVY
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	240	2.2.26 [Sep-21-2011]
Q9SJK3	997	Protein argonaute 5 OS=Ar	yes	no	0.970	0.233	0.606	9e-81
Q6K972	1011	Protein argonaute 1C OS=O	yes	no	0.983	0.233	0.576	3e-75
Q851R2	1058	Protein argonaute MEL1 OS	no	no	0.979	0.222	0.551	1e-74
Q7XSA2	1118	Protein argonaute 1B OS=O	no	no	0.995	0.213	0.557	2e-73
O04379	1048	Protein argonaute 1 OS=Ar	no	no	0.979	0.224	0.545	3e-72
Q5Z5B2	1038	Protein argonaute 1D OS=O	no	no	0.979	0.226	0.537	9e-71
Q6EU14	1082	Protein argonaute 1A OS=O	no	no	0.995	0.220	0.528	5e-70
Q69VD5	979	Protein argonaute PNH1 OS	no	no	0.983	0.241	0.510	8e-69
Q9XGW1	988	Protein argonaute 10 OS=A	no	no	0.983	0.238	0.495	1e-65
Q7Y001	1049	Protein argonaute 12 OS=O	no	no	0.958	0.219	0.518	5e-65

>sp|Q9SJK3|AGO5_ARATH Protein argonaute 5 OS=Arabidopsis thaliana GN=AGO5 PE=1 SV=2

 Score =  299 bits (766), Expect = 9e-81,   Method: Compositional matrix adjust.
 Identities = 148/244 (60%), Positives = 183/244 (75%), Gaps = 11/244 (4%)

Query: 3   FPVRPGFGTVGKKCVVRANHFMVQLAERDIHHYDVSITPEVTSKKINRQIISQLINLYRL 62
           FPVRPG GT+GKK +VRANHF+VQ+A+RD++HYDVSI PEV SK +NR ++  L+  Y+ 
Sbjct: 147 FPVRPGRGTLGKKVMVRANHFLVQVADRDLYHYDVSINPEVISKTVNRNVMKLLVKNYKD 206

Query: 63  THLGERMPAYDGMKSIYTAGPLPFESKEFIIKLPDSDPRPSSSTRPRRERQFRVVIRLAS 122
           +HLG + PAYDG KS+YTAGPLPF+SKEF++ L +     SS     ++R F+V ++  +
Sbjct: 207 SHLGGKSPAYDGRKSLYTAGPLPFDSKEFVVNLAEKRADGSSG----KDRPFKVAVKNVT 262

Query: 123 KPDLYTLQQFLLRRHFEAPYEVIQVLDVVLRAAPSEKHTVVGRSFFSTDLGPV-----GQ 177
             DLY LQQFL R+  EAPY+ IQVLDVVLR  PS  +  VGRSFF T LG       G+
Sbjct: 263 STDLYQLQQFLDRKQREAPYDTIQVLDVVLRDKPSNDYVSVGRSFFHTSLGKDARDGRGE 322

Query: 178 LGDGVEYWRGYFQSLRPTQMGLSLNIDVSARSFYEPILVTEFVQYY--CRDLSRPLSDQV 235
           LGDG+EYWRGYFQSLR TQMGLSLNIDVSARSFYEPI+VT+F+  +   RDL+RPL D  
Sbjct: 323 LGDGIEYWRGYFQSLRLTQMGLSLNIDVSARSFYEPIVVTDFISKFLNIRDLNRPLRDSD 382

Query: 236 RLKV 239
           RLKV
Sbjct: 383 RLKV 386

Involved in RNA-mediated post-transcriptional gene silencing (PTGS). Main component of the RNA-induced silencing complex (RISC) that binds to a short guide RNA such as a microRNA (miRNA) or small interfering RNA (siRNA). RISC uses the mature miRNA or siRNA as a guide for slicer-directed cleavage of homologous mRNAs to repress gene expression. Associates with siRNAs of various sizes, from 21-24 nucleotide in length and preferentially recruits small RNAs with a 5' terminal cytosine. Probably involved in antiviral RNA silencing. Associates with siRNAs derived from cucumber mosaic virus (CMV). Targeted by the turnip yellows virus (TuYV) protein P0 (via F-box-like domain) for probable proteasome degradation and thereby inactivating AGO5 function in RNA silencing.
Arabidopsis thaliana (taxid: 3702)

>sp|Q6K972|AGO1C_ORYSJ Protein argonaute 1C OS=Oryza sativa subsp. japonica GN=AGO1C PE=2 SV=1

 Score =  281 bits (718), Expect = 3e-75,   Method: Compositional matrix adjust.
 Identities = 139/241 (57%), Positives = 180/241 (74%), Gaps = 5/241 (2%)

Query: 1   MRFPVRPGFGTVGKKCVVRANHFMVQLAERDIHHYDVSITPEVTSKKINRQIISQLINLY 60
           +RFP+RPG GT+G +C+V+ANHF   L  +D+HHYDVSITPEVTS+ +NR +I +L+NLY
Sbjct: 141 IRFPLRPGKGTIGTRCMVKANHFFAHLPNKDLHHYDVSITPEVTSRIVNRAVIKELVNLY 200

Query: 61  RLTHLGERMPAYDGMKSIYTAGPLPFESKEFIIKLPDSDPRPSSSTRPRRERQFRVVIRL 120
           + ++LG R+PAYDG KS+YTAGPLPF S+EF I L D D     S   RR+R FRVVI+ 
Sbjct: 201 KASYLGGRLPAYDGRKSLYTAGPLPFTSQEFQITLLDDD---DGSGSERRQRTFRVVIKF 257

Query: 121 ASKPDLYTLQQFLLRRHFEAPYEVIQVLDVVLRAAPSEKHTVVGRSFFSTDLGPVGQLGD 180
           A++ DL+ L+ FL  RH EAP E +QVLD+VLR  PS ++   GRSFFS  LG    LG+
Sbjct: 258 AARADLHRLELFLAGRHAEAPQEALQVLDIVLRELPSARYAPFGRSFFSPYLGRRQPLGE 317

Query: 181 GVEYWRGYFQSLRPTQMGLSLNIDVSARSFYEPILVTEFV-QYYCRDL-SRPLSDQVRLK 238
           G+E WRG++QS+RPTQMGLSLNID+SA +F EP+ V +FV Q    D+ SRPLSD  R+K
Sbjct: 318 GLESWRGFYQSIRPTQMGLSLNIDMSATAFIEPLPVIDFVAQLLNSDIHSRPLSDAERVK 377

Query: 239 V 239
           +
Sbjct: 378 I 378

Probably involved in the RNA silencing pathway. May bind to short RNAs such as microRNAs (miRNAs) or short interfering RNAs (siRNAs), and represses the translation of mRNAs which are complementary to them.

Oryza sativa subsp. japonica (taxid: 39947)

>sp|Q851R2|MEL1_ORYSJ Protein argonaute MEL1 OS=Oryza sativa subsp. japonica GN=MEL1 PE=2 SV=1

 Score =  279 bits (714), Expect = 1e-74,   Method: Compositional matrix adjust.
 Identities = 133/241 (55%), Positives = 178/241 (73%), Gaps = 6/241 (2%)

Query: 1   MRFPVRPGFGTVGKKCVVRANHFMVQLAERDIHHYDVSITPEVTSKKINRQIISQLINLY 60
           +  P RPGFG  GKK ++RANHF+V +A+ ++ HYDVSI PE  S+  NR+++++LI L+
Sbjct: 197 LAHPARPGFGAAGKKVMIRANHFLVNVADNNLFHYDVSINPESKSRATNREVLNELIKLH 256

Query: 61  RLTHLGERMPAYDGMKSIYTAGPLPFESKEFIIKLPDSDPRPSSSTRPRRERQFRVVIRL 120
             T LG ++PAYDG KS+YTAG LPFES+EF++KL D    P    + R ER++++ IR+
Sbjct: 257 GKTSLGGKLPAYDGRKSLYTAGSLPFESEEFVVKLID----PEKKDKERAEREYKITIRI 312

Query: 121 ASKPDLYTLQQFLLRRHFEAPYEVIQVLDVVLRAAPSEKHTVVGRSFFSTDLGPVGQLGD 180
           A + DLY LQQFLL R  + P E IQVLDVVLR +PS  +  V RSFFST  G  G +G+
Sbjct: 313 AGRTDLYHLQQFLLGRQRDMPQETIQVLDVVLRESPSWNYVTVSRSFFSTQFGHRGDIGE 372

Query: 181 GVEYWRGYFQSLRPTQMGLSLNIDVSARSFYEPILVTEFVQYY--CRDLSRPLSDQVRLK 238
           G+E WRGY+QSLRPTQMGLSLNID+SA SF++P+ V +FV+ +   RD SRPLSD+ R+K
Sbjct: 373 GLECWRGYYQSLRPTQMGLSLNIDISATSFFKPVTVIQFVEEFLNIRDTSRPLSDRDRVK 432

Query: 239 V 239
           +
Sbjct: 433 I 433

Essential for the progression of premeiotic mitosis and meiosis during sporogenesis. Regulates the cell division of premeiotic germ cells, the proper modification of meiotic chromosomes, and the faithful progression of meiosis, probably via small RNA-mediated gene silencing. May be involved in histone H3 'Lys-9' demethylation in the pericentromeric region.

Oryza sativa subsp. japonica (taxid: 39947)

>sp|Q7XSA2|AGO1B_ORYSJ Protein argonaute 1B OS=Oryza sativa subsp. japonica GN=AGO1B PE=2 SV=3

 Score =  275 bits (703), Expect = 2e-73,   Method: Compositional matrix adjust.
 Identities = 135/242 (55%), Positives = 180/242 (74%), Gaps = 3/242 (1%)

Query: 1   MRFPVRPGFGTVGKKCVVRANHFMVQLAERDIHHYDVSITPEVTSKKINRQIISQLINLY 60
           +RFP+RPG GT G +C+V+ANHF  +L ++D+H YDVSITPEVTS+ +NR ++ +L+ LY
Sbjct: 242 VRFPLRPGKGTYGDRCIVKANHFFAELPDKDLHQYDVSITPEVTSRGVNRAVMFELVTLY 301

Query: 61  RLTHLGERMPAYDGMKSIYTAGPLPFESKEFIIKLPD-SDPRPSSSTRPRRERQFRVVIR 119
           R +HLG R+PAYDG KS+YTAGPLPF S+ F I L D  D         RRER FRVVI+
Sbjct: 302 RYSHLGGRLPAYDGRKSLYTAGPLPFASRTFEITLQDEEDSLGGGQGTQRRERLFRVVIK 361

Query: 120 LASKPDLYTLQQFLLRRHFEAPYEVIQVLDVVLRAAPSEKHTVVGRSFFSTDLGPVGQLG 179
            A++ DL+ L  FL  R  +AP E +QVLD+VLR  P+ +++ VGRSF+S +LG   QLG
Sbjct: 362 FAARADLHHLAMFLAGRQADAPQEALQVLDIVLRELPTTRYSPVGRSFYSPNLGRRQQLG 421

Query: 180 DGVEYWRGYFQSLRPTQMGLSLNIDVSARSFYEPILVTEFV-QYYCRDLS-RPLSDQVRL 237
           +G+E WRG++QS+RPTQMGLSLNID+S+ +F EP+ V +FV Q   RD+S RPLSD  R+
Sbjct: 422 EGLESWRGFYQSIRPTQMGLSLNIDMSSTAFIEPLPVIDFVAQLLNRDISVRPLSDSDRV 481

Query: 238 KV 239
           K+
Sbjct: 482 KI 483

Probably involved in the RNA silencing pathway. May bind to short RNAs such as microRNAs (miRNAs) or short interfering RNAs (siRNAs), and represses the translation of mRNAs which are complementary to them.

Oryza sativa subsp. japonica (taxid: 39947)

>sp|O04379|AGO1_ARATH Protein argonaute 1 OS=Arabidopsis thaliana GN=AGO1 PE=1 SV=1

 Score =  271 bits (693), Expect = 3e-72,   Method: Compositional matrix adjust.
 Identities = 131/240 (54%), Positives = 178/240 (74%), Gaps = 5/240 (2%)

Query: 2   RFPVRPGFGTVGKKCVVRANHFMVQLAERDIHHYDVSITPEVTSKKINRQIISQLINLYR 61
           +FP+RPG G  GK+C+V+ANHF  +L ++D+HHYDV+ITPEVTS+ +NR ++ QL++ YR
Sbjct: 178 KFPMRPGKGQSGKRCIVKANHFFAELPDKDLHHYDVTITPEVTSRGVNRAVMKQLVDNYR 237

Query: 62  LTHLGERMPAYDGMKSIYTAGPLPFESKEFIIKLPDSDPRPSSSTRPRRERQFRVVIRLA 121
            +HLG R+PAYDG KS+YTAGPLPF SKEF I L D +     +   RRER+F+VVI+L 
Sbjct: 238 DSHLGSRLPAYDGRKSLYTAGPLPFNSKEFRINLLDEE---VGAGGQRREREFKVVIKLV 294

Query: 122 SKPDLYTLQQFLLRRHFEAPYEVIQVLDVVLRAAPSEKHTVVGRSFFSTDLGPVGQLGDG 181
           ++ DL+ L  FL  +  +AP E +QVLD+VLR  P+ ++  VGRSF+S D+G    LGDG
Sbjct: 295 ARADLHHLGMFLEGKQSDAPQEALQVLDIVLRELPTSRYIPVGRSFYSPDIGKKQSLGDG 354

Query: 182 VEYWRGYFQSLRPTQMGLSLNIDVSARSFYEPILVTEFV-QYYCRDL-SRPLSDQVRLKV 239
           +E WRG++QS+RPTQMGLSLNID+S+ +F E   V +FV     RD+ SRPLSD  R+K+
Sbjct: 355 LESWRGFYQSIRPTQMGLSLNIDMSSTAFIEANPVIQFVCDLLNRDISSRPLSDADRVKI 414

Involved in RNA-mediated post-transcriptional gene silencing (PTGS). Main component of the RNA-induced silencing complex (RISC) that binds to a short guide RNA such as microRNA (miRNA) or small interfering RNA (siRNA). RISC uses the mature miRNA or siRNA as a guide for slicer-directed cleavage of homologous mRNAs to repress gene expression. Requires DRB1 for directional loading of the small RNA duplex (guide stand and passenger strand) onto RISC for passenger strand degradation. Unlike animal RISC that associates in high molecular weight complex, Arabidopsis RISC is probably composed only of the AGO1 protein and associated RNA without any other proteins. Associates mainly with miRNAs of 21 nucleotide in length and preferentially recruits small RNAs with a 5' terminal uridine. Associates with 22 nucleotide miRNAs to trigger RDR6-dependent secondary siRNAs biogenesis. This pathway amplifies silencing by using the target RNA as substrate to generate secondary siRNAs. Binds to miR168 which targets its own mRNA for repression, establishing a homeostatic regulatory loop. Involved in antiviral RNA silencing by contributing to viral RNA clearance. Is capable of targeting viral RNAs with more compact structures than AGO7 which favors less structured RNA targets. May not associate with 24 nucleotide siRNAs involved in chromatin silencing. Essential for multiple processes in development. Essential for proper development of leaves and floral organs, and formation of axillary meristems. Like AGO10, required for stem cell function and organ polarity.

Arabidopsis thaliana (taxid: 3702)

>sp|Q5Z5B2|AGO1D_ORYSJ Protein argonaute 1D OS=Oryza sativa subsp. japonica GN=AGO1D PE=2 SV=1

 Score =  266 bits (680), Expect = 9e-71,   Method: Compositional matrix adjust.
 Identities = 129/240 (53%), Positives = 179/240 (74%), Gaps = 5/240 (2%)

Query: 2   RFPVRPGFGTVGKKCVVRANHFMVQLAERDIHHYDVSITPEVTSKKINRQIISQLINLYR 61
           +FP RPG G++G +C+V+ANHF  QL ++D+H YDVSITPE+TS+  +R ++ +L+ L++
Sbjct: 170 KFPHRPGSGSIGTRCLVKANHFFAQLPDKDLHQYDVSITPELTSRIRSRAVMEELVRLHK 229

Query: 62  LTHLGERMPAYDGMKSIYTAGPLPFESKEFIIKLPDSDPRPSSSTRPRRERQFRVVIRLA 121
           +++LG R+PAYDG KS+YTAGPLPF SKEF I L + D     S   RR++ + VVI+ A
Sbjct: 230 MSYLGGRLPAYDGRKSLYTAGPLPFTSKEFRISLLEED---DGSGSERRQKTYNVVIKFA 286

Query: 122 SKPDLYTLQQFLLRRHFEAPYEVIQVLDVVLRAAPSEKHTVVGRSFFSTDLGPVGQLGDG 181
           ++ DL+ L+QFL  R  EAP E +QVLD+VLR  P+ ++   GRSFFS DLG    LG+G
Sbjct: 287 ARADLHRLEQFLAGRQAEAPQEALQVLDIVLRELPTARYAPFGRSFFSPDLGRRRSLGEG 346

Query: 182 VEYWRGYFQSLRPTQMGLSLNIDVSARSFYEPILVTEFV-QYYCRDL-SRPLSDQVRLKV 239
           +E WRG++QS+RPTQMGLSLNID+SA +F+EP+ V +FV Q    D+ SRPLSD  R+K+
Sbjct: 347 LETWRGFYQSIRPTQMGLSLNIDMSATAFFEPLPVIDFVIQLLNTDIRSRPLSDAERVKI 406

Probably involved in the RNA silencing pathway. May bind to short RNAs such as microRNAs (miRNAs) or short interfering RNAs (siRNAs), and represses the translation of mRNAs which are complementary to them.

Oryza sativa subsp. japonica (taxid: 39947)

>sp|Q6EU14|AGO1A_ORYSJ Protein argonaute 1A OS=Oryza sativa subsp. japonica GN=AGO1A PE=2 SV=1

 Score =  264 bits (674), Expect = 5e-70,   Method: Compositional matrix adjust.
 Identities = 128/242 (52%), Positives = 177/242 (73%), Gaps = 3/242 (1%)

Query: 1   MRFPVRPGFGTVGKKCVVRANHFMVQLAERDIHHYDVSITPEVTSKKINRQIISQLINLY 60
           +RFP+RPG GT G +C+V+ANHF  +L ++D+H YDVSITPEV S+ +NR +I +++  Y
Sbjct: 205 VRFPMRPGKGTFGDRCIVKANHFFAELPDKDLHQYDVSITPEVPSRGVNRAVIGEIVTQY 264

Query: 61  RLTHLGERMPAYDGMKSIYTAGPLPFESKEFIIKLPDSDPRPS-SSTRPRRERQFRVVIR 119
           R +HLG R+P YDG KS+YTAGPLPF S+ F + L D +   +      RRER F+VVI+
Sbjct: 265 RQSHLGGRLPVYDGRKSLYTAGPLPFTSRTFDVILQDEEESLAVGQGAQRRERPFKVVIK 324

Query: 120 LASKPDLYTLQQFLLRRHFEAPYEVIQVLDVVLRAAPSEKHTVVGRSFFSTDLGPVGQLG 179
            A++ DL+ L  FL  R  +AP E +QVLD+VLR  P+ +++ V RSF+S +LG   QLG
Sbjct: 325 FAARADLHHLAMFLAGRQADAPQEALQVLDIVLRELPTARYSPVARSFYSPNLGRRQQLG 384

Query: 180 DGVEYWRGYFQSLRPTQMGLSLNIDVSARSFYEPILVTEFV-QYYCRDLS-RPLSDQVRL 237
           +G+E WRG++QS+RPTQMGLSLNID+S+ +F EP+ V +FV Q   RD+S RPLSD  R+
Sbjct: 385 EGLESWRGFYQSIRPTQMGLSLNIDMSSTAFIEPLPVIDFVAQLLNRDISVRPLSDADRV 444

Query: 238 KV 239
           K+
Sbjct: 445 KI 446

Probably involved in the RNA silencing pathway. May bind to short RNAs such as microRNAs (miRNAs) or short interfering RNAs (siRNAs), and represses the translation of mRNAs which are complementary to them.

Oryza sativa subsp. japonica (taxid: 39947)

>sp|Q69VD5|PNH1_ORYSJ Protein argonaute PNH1 OS=Oryza sativa subsp. japonica GN=PHN1 PE=2 SV=1

 Score =  259 bits (663), Expect = 8e-69,   Method: Compositional matrix adjust.
 Identities = 123/241 (51%), Positives = 179/241 (74%), Gaps = 5/241 (2%)

Query: 1   MRFPVRPGFGTVGKKCVVRANHFMVQLAERDIHHYDVSITPEVTSKKINRQIISQLINLY 60
           + F  RPGFGTVG +CVV+ANHF+ +L ++D+  YDV ITPEV+S+ +NR I+S+L+ LY
Sbjct: 122 LSFCRRPGFGTVGARCVVKANHFLAELPDKDLTQYDVKITPEVSSRSVNRAIMSELVRLY 181

Query: 61  RLTHLGERMPAYDGMKSIYTAGPLPFESKEFIIKLPDSDPRPSSSTRPRRERQFRVVIRL 120
             + LG R+PAYDG K++YTAG LPF+++EF+++L D D     +  P RER++RV I+ 
Sbjct: 182 HDSDLGGRLPAYDGRKNLYTAGTLPFDAREFVVRLTDDD---DGTGVPPREREYRVAIKF 238

Query: 121 ASKPDLYTLQQFLLRRHFEAPYEVIQVLDVVLRAAPSEKHTVVGRSFFSTDLGPVGQLGD 180
           A++ DL+ L+QF+  R  +AP E +QVLD+VLR   + ++  +GRSF+S D+    +LGD
Sbjct: 239 AARADLHHLRQFIAGRQADAPQEALQVLDIVLRELANRRYVSIGRSFYSPDIRKPQRLGD 298

Query: 181 GVEYWRGYFQSLRPTQMGLSLNIDVSARSFYEPILVTEFV-QYYCRD-LSRPLSDQVRLK 238
           G++ W G++QS+RPTQMGLSLNID+S+ +F EP+ V EFV Q   +D +SRPLSD  R+K
Sbjct: 299 GLQSWCGFYQSIRPTQMGLSLNIDMSSTAFIEPLPVIEFVAQILGKDVISRPLSDANRIK 358

Query: 239 V 239
           +
Sbjct: 359 I 359

Probably involved in the RNA silencing pathway. May bind to short RNAs such as microRNAs (miRNAs) or short interfering RNAs (siRNAs), and represses the translation of mRNAs which are complementary to them (By similarity). Plays a role in the maintenance of the indeterminate state of the stem cells in the shoot apical meristem (SAM). Regulates leaf formation through vascular development and may be involved in determining the central domain of the leaf founder region.

Oryza sativa subsp. japonica (taxid: 39947)

>sp|Q9XGW1|AGO10_ARATH Protein argonaute 10 OS=Arabidopsis thaliana GN=AGO10 PE=2 SV=1

 Score =  249 bits (636), Expect = 1e-65,   Method: Compositional matrix adjust.
 Identities = 119/240 (49%), Positives = 172/240 (71%), Gaps = 4/240 (1%)

Query: 2   RFPVRPGFGTVGKKCVVRANHFMVQLAERDIHHYDVSITPEVTSKKINRQIISQLINLYR 61
            F  RPGFGT+G KC+V+ANHF+  L  +D++ YDV+ITPEV+SK +NR II++L+ LY+
Sbjct: 127 NFAPRPGFGTLGTKCIVKANHFLADLPTKDLNQYDVTITPEVSSKSVNRAIIAELVRLYK 186

Query: 62  LTHLGERMPAYDGMKSIYTAGPLPFESKEFIIKLPDSDPRPSSSTRPRRERQFRVVIRLA 121
            + LG R+PAYDG KS+YTAG LPF  KEF +K+ D D    +   P+RER ++V I+  
Sbjct: 187 ESDLGRRLPAYDGRKSLYTAGELPFTWKEFSVKIVDEDDGIING--PKRERSYKVAIKFV 244

Query: 122 SKPDLYTLQQFLLRRHFEAPYEVIQVLDVVLRAAPSEKHTVVGRSFFSTDLGPVGQLGDG 181
           ++ +++ L +FL  +  + P E +Q+LD+VLR    ++   VGRSFFS D+    +LG+G
Sbjct: 245 ARANMHHLGEFLAGKRADCPQEAVQILDIVLRELSVKRFCPVGRSFFSPDIKTPQRLGEG 304

Query: 182 VEYWRGYFQSLRPTQMGLSLNIDVSARSFYEPILVTEFV-QYYCRD-LSRPLSDQVRLKV 239
           +E W G++QS+RPTQMGLSLNID+++ +F EP+ V EFV Q   +D LS+PLSD  R+K+
Sbjct: 305 LESWCGFYQSIRPTQMGLSLNIDMASAAFIEPLPVIEFVAQLLGKDVLSKPLSDSDRVKI 364

Involved in RNA-mediated post-transcriptional gene silencing (PTGS). Main component of the RNA-induced silencing complex (RISC) that binds to a short guide RNA such as a microRNA (miRNA) or small interfering RNA (siRNA). RISC uses the mature miRNA or siRNA as a guide for slicer-directed cleavage of homologous mRNAs to repress gene expression. Required for reliable formation of primary and axillary shoot apical meristems. Specifies leaf adaxial identity by repressing the miR165 and miR166 microRNAs in the embryonic shoot apex, in the shoot apical meristem (SAM) and leaf. Represses the microRNA miR398 which targets CCS1 chaperone mRNAs for translational inhibition. Acts as a negative regulator of AGO1 protein level. Like AGO1, is required for stem cell function and organ polarity. Unlike AGO1, is not subjected to small RNA-mediated repression itself. Essential for multiple processes in development.

Arabidopsis thaliana (taxid: 3702)

>sp|Q7Y001|AGO12_ORYSJ Protein argonaute 12 OS=Oryza sativa subsp. japonica GN=AGO12 PE=2 SV=2

 Score =  247 bits (630), Expect = 5e-65,   Method: Compositional matrix adjust.
 Identities = 127/245 (51%), Positives = 175/245 (71%), Gaps = 15/245 (6%)

Query: 3   FPVRPGFGTVGKKCVVRANHFMVQLAERDIHHYDVSITPEVTSKKINRQIISQLINLYRL 62
           FP RP  GT+G++C VRANHF+VQ+A++DI+HYDV ITPE T ++ NR II++L+ L++ 
Sbjct: 193 FPARPDVGTIGRRCRVRANHFLVQVADKDIYHYDVVITPESTYRERNRSIINKLVALHK- 251

Query: 63  THLGERMPAYDGMKSIYTAGPLPFESKEFIIKLPDSDPRPSSSTRPRRERQFRVVIRLAS 122
             L  R+P YDG KSIYTAGPLPF++K+F++K    +P   +    +RE +++V I+ AS
Sbjct: 252 QFLDGRLPVYDGRKSIYTAGPLPFKTKDFVVK--HINPLRGN----QREEEYKVTIKQAS 305

Query: 123 KPDLYTLQQFLLRRHFEAPYEVIQVLDVVLRAAPS------EKHTVVGRSFFSTDLGPVG 176
           K DLY+L+QFL+ R  E P + IQ LD+ LR  P+      +++  + RSFFS   G  G
Sbjct: 306 KTDLYSLKQFLVGRQRELPQDTIQALDIALRECPTSVNFTCDRYVSISRSFFSQSFGHGG 365

Query: 177 QLGDGVEYWRGYFQSLRPTQMGLSLNIDVSARSFYEPILVTEF-VQYY-CRDLSRPLSDQ 234
           ++G G E WRGY+QSLRPTQMGLSLNID+SA +FY+   V +F VQY   RD+SR LSDQ
Sbjct: 366 EIGSGTECWRGYYQSLRPTQMGLSLNIDISATAFYKAQPVMDFAVQYLNIRDVSRRLSDQ 425

Query: 235 VRLKV 239
            R+K+
Sbjct: 426 DRIKL 430

Probably involved in the RNA silencing pathway. May bind to short RNAs such as microRNAs (miRNAs) or short interfering RNAs (siRNAs), and represses the translation of mRNAs which are complementary to them.

Oryza sativa subsp. japonica (taxid: 39947)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	240
255565533	987	eukaryotic translation initiation factor	0.995	0.242	0.672	2e-93
224106886	987	argonaute protein group [Populus trichoc	0.983	0.239	0.676	1e-91
359479401	1038	PREDICTED: LOW QUALITY PROTEIN: protein	0.995	0.230	0.679	2e-90
297734872	1032	unnamed protein product [Vitis vinifera]	0.979	0.227	0.680	2e-90
224054242	904	argonaute protein group [Populus trichoc	0.966	0.256	0.661	2e-87
449443600	987	PREDICTED: protein argonaute 5-like [Cuc	0.95	0.231	0.666	1e-81
449533532	402	PREDICTED: protein argonaute 5-like, par	0.95	0.567	0.666	5e-81
449520607	984	PREDICTED: LOW QUALITY PROTEIN: protein	0.95	0.231	0.666	6e-81
297826159	1001	hypothetical protein ARALYDRAFT_481718 [	0.979	0.234	0.605	4e-80
4510428	997	Argonaute (AGO1)-like protein [Arabidops	0.970	0.233	0.606	5e-79

>gi|255565533|ref|XP_002523757.1| eukaryotic translation initiation factor 2c, putative [Ricinus communis] gi|223537061|gb|EEF38697.1| eukaryotic translation initiation factor 2c, putative [Ricinus communis]

 Score =  347 bits (890), Expect = 2e-93,   Method: Compositional matrix adjust.
 Identities = 162/241 (67%), Positives = 200/241 (82%), Gaps = 2/241 (0%)

Query: 1   MRFPVRPGFGTVGKKCVVRANHFMVQLAERDIHHYDVSITPEVTSKKINRQIISQLINLY 60
           +RFP RPG+G++G KCVV+ANHF+V +A+RD+  YDVSITPE+TSKKINR +ISQLI ++
Sbjct: 132 IRFPNRPGYGSIGMKCVVKANHFLVDVADRDLRQYDVSITPELTSKKINRDVISQLIRMF 191

Query: 61  RLTHLGERMPAYDGMKSIYTAGPLPFESKEFIIKLPDSDPRPSSSTRPRRERQFRVVIRL 120
           R +HLG R  AYDG KS+YTAGPLPFESKEF++KL +S+    SS   ++ER+F+V I+ 
Sbjct: 192 RQSHLGNRRAAYDGRKSLYTAGPLPFESKEFVVKLVESNKNAGSSVSSKKEREFKVAIKF 251

Query: 121 ASKPDLYTLQQFLLRRHFEAPYEVIQVLDVVLRAAPSEKHTVVGRSFFSTDLGPVGQLGD 180
           ASKPD++ L+QFL+ R  + P E IQVLD+VLR  PSEK+T VGRSFFS DLG  G+LGD
Sbjct: 252 ASKPDIHHLKQFLIGRQMDCPQETIQVLDIVLRETPSEKYTPVGRSFFSPDLGQKGELGD 311

Query: 181 GVEYWRGYFQSLRPTQMGLSLNIDVSARSFYEPILVTEFVQYY--CRDLSRPLSDQVRLK 238
           G+EYWRGY+QSLRPTQMGLSLNIDVSARSFYEPI+VT+FV  Y   RD+SRPLSDQ R+K
Sbjct: 312 GIEYWRGYYQSLRPTQMGLSLNIDVSARSFYEPIIVTDFVSKYLKLRDMSRPLSDQDRIK 371

Query: 239 V 239
           V
Sbjct: 372 V 372

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224106886|ref|XP_002314317.1| argonaute protein group [Populus trichocarpa] gi|222850725|gb|EEE88272.1| argonaute protein group [Populus trichocarpa]

 Score =  342 bits (876), Expect = 1e-91,   Method: Compositional matrix adjust.
 Identities = 161/238 (67%), Positives = 197/238 (82%), Gaps = 2/238 (0%)

Query: 4   PVRPGFGTVGKKCVVRANHFMVQLAERDIHHYDVSITPEVTSKKINRQIISQLINLYRLT 63
           P RP +G +GKKCV+RANHF+V++++RD+ HYDV+ITPE+TSKK+NR +ISQL+  YR +
Sbjct: 116 PRRPDYGKIGKKCVIRANHFVVEVSDRDLFHYDVAITPEITSKKVNRDVISQLVRSYRES 175

Query: 64  HLGERMPAYDGMKSIYTAGPLPFESKEFIIKLPDSDPRPSSSTRPRRERQFRVVIRLASK 123
           HLG RMPAYDG KS+YTAG LPFE+KEF++KL +     SSS+  ++ERQF+V I+ ASK
Sbjct: 176 HLGNRMPAYDGRKSLYTAGALPFEAKEFVVKLAERGDPASSSSSVKKERQFKVAIKYASK 235

Query: 124 PDLYTLQQFLLRRHFEAPYEVIQVLDVVLRAAPSEKHTVVGRSFFSTDLGPVGQLGDGVE 183
            D+Y L++FL  R  +AP E IQ+LD+VLRA+PSEK+  VGRSFFS DLGP G LGDG+E
Sbjct: 236 VDMYHLKEFLSGRQADAPQETIQILDIVLRASPSEKYITVGRSFFSPDLGPKGDLGDGIE 295

Query: 184 YWRGYFQSLRPTQMGLSLNIDVSARSFYEPILVTEFVQYY--CRDLSRPLSDQVRLKV 239
           YWRGY+QSLRPTQMGLS NIDVSARSFYEPILVTEFV  Y   RDLSRPLSDQ R+KV
Sbjct: 296 YWRGYYQSLRPTQMGLSFNIDVSARSFYEPILVTEFVAKYFNFRDLSRPLSDQERVKV 353

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|359479401|ref|XP_002271699.2| PREDICTED: LOW QUALITY PROTEIN: protein argonaute 5-like [Vitis vinifera]

 Score =  337 bits (864), Expect = 2e-90,   Method: Compositional matrix adjust.
 Identities = 165/243 (67%), Positives = 197/243 (81%), Gaps = 4/243 (1%)

Query: 1   MRFPVRPGFGTVGKKCVVRANHFMVQLAERDIHHYDVSITPEVTSKKINRQIISQLINLY 60
           + FP RPG+GTVG+KC VRANHF VQ+ +R+  HYDV+ITPEV SK +NR+II QL++LY
Sbjct: 171 ITFPRRPGYGTVGRKCKVRANHFQVQVDDREFCHYDVTITPEVMSKTLNREIIKQLVDLY 230

Query: 61  RLTHLGERMPAYDGMKSIYTAGPLPFESKEFIIKLPDSD--PRPSSSTRPRRERQFRVVI 118
           +++HLG+R PAYDG KS+YTAGPLPF SKEF++KL  +D    PS     RRER+F+V I
Sbjct: 231 KVSHLGKRSPAYDGSKSLYTAGPLPFTSKEFVVKLVKTDDGAGPSXCLTCRREREFKVAI 290

Query: 119 RLASKPDLYTLQQFLLRRHFEAPYEVIQVLDVVLRAAPSEKHTVVGRSFFSTDLGPVGQL 178
           +LASK DLY LQQFL  R   AP E IQ+LDVVLRA+PSEK+TVVGRSFFST LG  G+L
Sbjct: 291 KLASKGDLYQLQQFLCGRQLSAPQETIQILDVVLRASPSEKYTVVGRSFFSTQLGRKGEL 350

Query: 179 GDGVEYWRGYFQSLRPTQMGLSLNIDVSARSFYEPILVTEFVQYY--CRDLSRPLSDQVR 236
           GDG+EYWRGY+QSLRPTQMGLS NIDVSARSFYE ILVT+FV  +   RD+SR LSDQ R
Sbjct: 351 GDGLEYWRGYYQSLRPTQMGLSFNIDVSARSFYESILVTDFVAKHLKLRDVSRALSDQDR 410

Query: 237 LKV 239
           +KV
Sbjct: 411 IKV 413

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297734872|emb|CBI17106.3| unnamed protein product [Vitis vinifera]

 Score =  337 bits (864), Expect = 2e-90,   Method: Compositional matrix adjust.
 Identities = 164/241 (68%), Positives = 196/241 (81%), Gaps = 6/241 (2%)

Query: 1   MRFPVRPGFGTVGKKCVVRANHFMVQLAERDIHHYDVSITPEVTSKKINRQIISQLINLY 60
           + FP RPG+GTVG+KC VRANHF VQ+ +R+  HYDV+ITPEV SK +NR+II QL++LY
Sbjct: 171 ITFPRRPGYGTVGRKCKVRANHFQVQVDDREFCHYDVTITPEVMSKTLNREIIKQLVDLY 230

Query: 61  RLTHLGERMPAYDGMKSIYTAGPLPFESKEFIIKLPDSDPRPSSSTRPRRERQFRVVIRL 120
           +++HLG+R PAYDG KS+YTAGPLPF SKEF++KL  +D        PRRER+F+V I+L
Sbjct: 231 KVSHLGKRSPAYDGSKSLYTAGPLPFTSKEFVVKLVKTD----DGAGPRREREFKVAIKL 286

Query: 121 ASKPDLYTLQQFLLRRHFEAPYEVIQVLDVVLRAAPSEKHTVVGRSFFSTDLGPVGQLGD 180
           ASK DLY LQQFL  R   AP E IQ+LDVVLRA+PSEK+TVVGRSFFST LG  G+LGD
Sbjct: 287 ASKGDLYQLQQFLCGRQLSAPQETIQILDVVLRASPSEKYTVVGRSFFSTQLGRKGELGD 346

Query: 181 GVEYWRGYFQSLRPTQMGLSLNIDVSARSFYEPILVTEFVQYY--CRDLSRPLSDQVRLK 238
           G+EYWRGY+QSLRPTQMGLS NIDVSARSFYE ILVT+FV  +   RD+SR LSDQ R+K
Sbjct: 347 GLEYWRGYYQSLRPTQMGLSFNIDVSARSFYESILVTDFVAKHLKLRDVSRALSDQDRIK 406

Query: 239 V 239
           V
Sbjct: 407 V 407

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224054242|ref|XP_002298162.1| argonaute protein group [Populus trichocarpa] gi|222845420|gb|EEE82967.1| argonaute protein group [Populus trichocarpa]

 Score =  327 bits (839), Expect = 2e-87,   Method: Compositional matrix adjust.
 Identities = 158/239 (66%), Positives = 195/239 (81%), Gaps = 7/239 (2%)

Query: 4   PVRPGFGTVGKKCVVRANHFMVQLAERDIHHYDVSITPEVTSKKINRQIISQLINLYRLT 63
           P RP  G +G+KC +RANHF+V++++RD+ HYDV+ITPE+TSKK+NR +ISQL+  YR +
Sbjct: 51  PPRPQLGRIGRKCTIRANHFVVEVSDRDLFHYDVAITPEITSKKVNRDVISQLVRSYRES 110

Query: 64  HLGERMPAYDGMKSIYTAGPLPFESKEFIIKLPD-SDPRPSSSTRPRRERQFRVVIRLAS 122
           HLG RMPAYDG KS+YTAG LPFE+KEF++KL + +DP  SSS+    ERQF V I+ AS
Sbjct: 111 HLGNRMPAYDGRKSLYTAGALPFEAKEFVVKLVEKNDPASSSSS----ERQFNVAIKYAS 166

Query: 123 KPDLYTLQQFLLRRHFEAPYEVIQVLDVVLRAAPSEKHTVVGRSFFSTDLGPVGQLGDGV 182
           K D++ L++FL  R  + P E IQ+LD+VLRA+PSEK+  VGRSFFS DLG  G+LG+G+
Sbjct: 167 KVDMHHLKEFLSGRQKDVPQETIQILDIVLRASPSEKYVTVGRSFFSLDLGKKGELGNGI 226

Query: 183 EYWRGYFQSLRPTQMGLSLNIDVSARSFYEPILVTEFVQYY--CRDLSRPLSDQVRLKV 239
           EYWRGY+QSLRPTQMGLSLNIDVSARSFYEPILVTEFV  Y   RDLSRPLSDQ R+KV
Sbjct: 227 EYWRGYYQSLRPTQMGLSLNIDVSARSFYEPILVTEFVAKYFNLRDLSRPLSDQDRVKV 285

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449443600|ref|XP_004139565.1| PREDICTED: protein argonaute 5-like [Cucumis sativus]

 Score =  308 bits (789), Expect = 1e-81,   Method: Compositional matrix adjust.
 Identities = 154/231 (66%), Positives = 184/231 (79%), Gaps = 3/231 (1%)

Query: 6   RPGFGTVGKKCVVRANHFMVQLAERDIHHYDVSITPEVTSKKINRQIISQLINLYRLTHL 65
           RPG+GT G+K VVRANHF+VQ+A++D+HHYDVSITPEVTSKK+ R I++QL N YR +HL
Sbjct: 130 RPGYGTAGRKVVVRANHFLVQVADKDLHHYDVSITPEVTSKKVCRDIVNQLANTYRESHL 189

Query: 66  GERMPAYDGMKSIYTAGPLPFESKEFIIKLPDSDPRPSSSTRPRRERQFRVVIRLASKPD 125
           G R  AYDG KS+Y AG LPF SKEF+IKL   D    SS   R+ER+F+V I+ ASKPD
Sbjct: 190 GGRYLAYDGGKSVYAAGQLPFSSKEFMIKLVRKD-GAGSSQPTRKEREFKVSIKFASKPD 248

Query: 126 LYTLQQFLLRRHFEAPYEVIQVLDVVLRAAPSEKHTVVGRSFFSTDLGPVGQLGDGVEYW 185
           L+ LQQF+ R+  +AP E IQVLDVVLR  PS  +TVVGRSFFS +LG  G+LG+GVEYW
Sbjct: 249 LHHLQQFIHRQQRDAPQETIQVLDVVLRTKPSVDYTVVGRSFFSHELGQPGELGNGVEYW 308

Query: 186 RGYFQSLRPTQMGLSLNIDVSARSFYEPILVTEFV--QYYCRDLSRPLSDQ 234
           RGY+QSLRP QMGLSLNIDVSARSFYEPI VTE+V   +  R LS+P+SDQ
Sbjct: 309 RGYYQSLRPVQMGLSLNIDVSARSFYEPISVTEYVVKHFNLRILSKPMSDQ 359

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449533532|ref|XP_004173728.1| PREDICTED: protein argonaute 5-like, partial [Cucumis sativus]

 Score =  306 bits (783), Expect = 5e-81,   Method: Compositional matrix adjust.
 Identities = 154/231 (66%), Positives = 182/231 (78%), Gaps = 3/231 (1%)

Query: 6   RPGFGTVGKKCVVRANHFMVQLAERDIHHYDVSITPEVTSKKINRQIISQLINLYRLTHL 65
           RPG+GT G+K VVRANHF+VQ+A++D HHYDVSITPEVTSKK+ R I++QL N YR +HL
Sbjct: 135 RPGYGTAGRKVVVRANHFLVQVADKDFHHYDVSITPEVTSKKVCRDIVNQLANTYRESHL 194

Query: 66  GERMPAYDGMKSIYTAGPLPFESKEFIIKLPDSDPRPSSSTRPRRERQFRVVIRLASKPD 125
           G R  AYDG KS+Y AG LPF SKEF+IKL   D    SS   R+ER+F+V I+ ASKPD
Sbjct: 195 GGRYLAYDGGKSVYAAGQLPFSSKEFMIKLVRKD-GAGSSQPTRKEREFKVSIKFASKPD 253

Query: 126 LYTLQQFLLRRHFEAPYEVIQVLDVVLRAAPSEKHTVVGRSFFSTDLGPVGQLGDGVEYW 185
           L+ LQQF+  R  +AP E IQVLDVVLR  PS  +TVVGRSFFS +LG  G+LG+GVEYW
Sbjct: 254 LHHLQQFIHGRQRDAPQETIQVLDVVLRTKPSVDYTVVGRSFFSHELGQPGELGNGVEYW 313

Query: 186 RGYFQSLRPTQMGLSLNIDVSARSFYEPILVTEFV--QYYCRDLSRPLSDQ 234
           RGY+QSLRP QMGLSLNIDVSARSFYEPI VTE+V   +  R LS+P+SDQ
Sbjct: 314 RGYYQSLRPVQMGLSLNIDVSARSFYEPISVTEYVVKHFNLRILSKPMSDQ 364

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449520607|ref|XP_004167325.1| PREDICTED: LOW QUALITY PROTEIN: protein argonaute 5-like [Cucumis sativus]

 Score =  306 bits (783), Expect = 6e-81,   Method: Compositional matrix adjust.
 Identities = 154/231 (66%), Positives = 182/231 (78%), Gaps = 3/231 (1%)

Query: 6   RPGFGTVGKKCVVRANHFMVQLAERDIHHYDVSITPEVTSKKINRQIISQLINLYRLTHL 65
           RPG+GT G+K VVRANHF+VQ+A++D HHYDVSITPEVTSKK+ R I++QL N YR +HL
Sbjct: 135 RPGYGTAGRKVVVRANHFLVQVADKDFHHYDVSITPEVTSKKVCRDIVNQLANTYRESHL 194

Query: 66  GERMPAYDGMKSIYTAGPLPFESKEFIIKLPDSDPRPSSSTRPRRERQFRVVIRLASKPD 125
           G R  AYDG KS+Y AG LPF SKEF+IKL   D    SS   R+ER+F+V I+ ASKPD
Sbjct: 195 GGRYLAYDGGKSVYAAGQLPFSSKEFMIKLVRKD-GAGSSQPTRKEREFKVSIKFASKPD 253

Query: 126 LYTLQQFLLRRHFEAPYEVIQVLDVVLRAAPSEKHTVVGRSFFSTDLGPVGQLGDGVEYW 185
           L+ LQQF+  R  +AP E IQVLDVVLR  PS  +TVVGRSFFS +LG  G+LG+GVEYW
Sbjct: 254 LHHLQQFIHGRQRDAPQETIQVLDVVLRTKPSVDYTVVGRSFFSHELGQPGELGNGVEYW 313

Query: 186 RGYFQSLRPTQMGLSLNIDVSARSFYEPILVTEFV--QYYCRDLSRPLSDQ 234
           RGY+QSLRP QMGLSLNIDVSARSFYEPI VTE+V   +  R LS+P+SDQ
Sbjct: 314 RGYYQSLRPVQMGLSLNIDVSARSFYEPISVTEYVVKHFNLRILSKPMSDQ 364

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297826159|ref|XP_002880962.1| hypothetical protein ARALYDRAFT_481718 [Arabidopsis lyrata subsp. lyrata] gi|297326801|gb|EFH57221.1| hypothetical protein ARALYDRAFT_481718 [Arabidopsis lyrata subsp. lyrata]

 Score =  303 bits (776), Expect = 4e-80,   Method: Compositional matrix adjust.
 Identities = 149/246 (60%), Positives = 185/246 (75%), Gaps = 11/246 (4%)

Query: 1   MRFPVRPGFGTVGKKCVVRANHFMVQLAERDIHHYDVSITPEVTSKKINRQIISQLINLY 60
           + +PVRPG GT+GKK ++RANHF+VQ+A+ D++HYDVSI PEV SK +NR ++  L+  Y
Sbjct: 147 ITYPVRPGRGTLGKKVLIRANHFLVQIADCDLYHYDVSINPEVISKAVNRNVMKLLVKNY 206

Query: 61  RLTHLGERMPAYDGMKSIYTAGPLPFESKEFIIKLPDSDPRPSSSTRPRRERQFRVVIRL 120
           + +HLG + PAYDG KS+YTAG LPFESKEF++ L +     SS     ++R F+V I+L
Sbjct: 207 KDSHLGGKAPAYDGRKSLYTAGALPFESKEFVVNLAEKRADGSSG----KDRSFKVAIKL 262

Query: 121 ASKPDLYTLQQFLLRRHFEAPYEVIQVLDVVLRAAPSEKHTVVGRSFFSTDLGPV----- 175
           AS+PDLY LQQFL  R  +APY+ IQVLDVVLR  PS  +  VGRSFF T LG       
Sbjct: 263 ASRPDLYQLQQFLAHRQRDAPYDTIQVLDVVLRDKPSNDYVSVGRSFFHTSLGKDTRDGR 322

Query: 176 GQLGDGVEYWRGYFQSLRPTQMGLSLNIDVSARSFYEPILVTEFVQYY--CRDLSRPLSD 233
           G+LGDG+EYWRG+FQSLR TQMGLSLNIDVSARSFYEPI+VTEF+  +   RDL+RPL D
Sbjct: 323 GELGDGIEYWRGFFQSLRLTQMGLSLNIDVSARSFYEPIVVTEFISKFLNIRDLNRPLRD 382

Query: 234 QVRLKV 239
             RLKV
Sbjct: 383 SDRLKV 388

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|4510428|gb|AAD21514.1| Argonaute (AGO1)-like protein [Arabidopsis thaliana]

 Score =  300 bits (767), Expect = 5e-79,   Method: Compositional matrix adjust.
 Identities = 148/244 (60%), Positives = 183/244 (75%), Gaps = 11/244 (4%)

Query: 3   FPVRPGFGTVGKKCVVRANHFMVQLAERDIHHYDVSITPEVTSKKINRQIISQLINLYRL 62
           FPVRPG GT+GKK +VRANHF+VQ+A+RD++HYDVSI PEV SK +NR ++  L+  Y+ 
Sbjct: 147 FPVRPGRGTLGKKVMVRANHFLVQVADRDLYHYDVSINPEVISKTVNRNVMKLLVKNYKD 206

Query: 63  THLGERMPAYDGMKSIYTAGPLPFESKEFIIKLPDSDPRPSSSTRPRRERQFRVVIRLAS 122
           +HLG + PAYDG KS+YTAGPLPF+SKEF++ L +     SS     ++R F+V ++  +
Sbjct: 207 SHLGGKSPAYDGRKSLYTAGPLPFDSKEFVVNLAEKRADGSSG----KDRPFKVAVKNVT 262

Query: 123 KPDLYTLQQFLLRRHFEAPYEVIQVLDVVLRAAPSEKHTVVGRSFFSTDLGPV-----GQ 177
             DLY LQQFL R+  EAPY+ IQVLDVVLR  PS  +  VGRSFF T LG       G+
Sbjct: 263 STDLYQLQQFLDRKQREAPYDTIQVLDVVLRDKPSNDYVSVGRSFFHTSLGKDARDGRGE 322

Query: 178 LGDGVEYWRGYFQSLRPTQMGLSLNIDVSARSFYEPILVTEFVQYY--CRDLSRPLSDQV 235
           LGDG+EYWRGYFQSLR TQMGLSLNIDVSARSFYEPI+VT+F+  +   RDL+RPL D  
Sbjct: 323 LGDGIEYWRGYFQSLRLTQMGLSLNIDVSARSFYEPIVVTDFISKFLNIRDLNRPLRDSD 382

Query: 236 RLKV 239
           RLKV
Sbjct: 383 RLKV 386

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	240
TAIR|locus:2057851	997	AGO5 "ARGONAUTE 5" [Arabidopsi	0.970	0.233	0.598	1.6e-72
UNIPROTKB|Q851R2	1058	MEL1 "Protein argonaute MEL1"	0.966	0.219	0.546	2.6e-66
UNIPROTKB|Q69VD5	979	PHN1 "Protein argonaute PNH1"	0.983	0.241	0.493	1.7e-60
TAIR|locus:2170897	988	AGO10 "ARGONAUTE 10" [Arabidop	0.979	0.237	0.481	4.6e-57
UNIPROTKB|F1P3Z1	847	EIF2C4 "Protein argonaute-4" [	0.945	0.268	0.370	2.8e-36
MGI|MGI:1924100	861	Ago4 "argonaute RISC catalytic	0.945	0.263	0.366	3.7e-36
UNIPROTKB|F1MXK6	850	EIF2C4 "Uncharacterized protei	0.945	0.267	0.366	4.6e-36
UNIPROTKB|Q9HCK5	861	EIF2C4 "Protein argonaute-4" [	0.945	0.263	0.366	4.7e-36
UNIPROTKB|F1SV64	861	EIF2C4 "Uncharacterized protei	0.945	0.263	0.366	4.7e-36
RGD|1304583	798	Ago4 "argonaute RISC catalytic	0.945	0.284	0.366	4.9e-36

TAIR|locus:2057851 AGO5 "ARGONAUTE 5" [Arabidopsis thaliana (taxid:3702)]

 Score = 733 (263.1 bits), Expect = 1.6e-72, P = 1.6e-72
 Identities = 146/244 (59%), Positives = 179/244 (73%)

Query:     3 FPVRPGFGTVGKKCVVRANHFMVQLAERDIHHYDVSITPEVTSKKINRQIISQLINLYRL 62
             FPVRPG GT+GKK +VRANHF+VQ+A+RD++HYDVSI PEV SK +NR ++  L+  Y+ 
Sbjct:   147 FPVRPGRGTLGKKVMVRANHFLVQVADRDLYHYDVSINPEVISKTVNRNVMKLLVKNYKD 206

Query:    63 THLGERMPAYDGMKSIYTAGPLPFESKEFIIKLXXXXXXXXXXXXXXXERQFRVVIRLAS 122
             +HLG + PAYDG KS+YTAGPLPF+SKEF++ L               +R F+V ++  +
Sbjct:   207 SHLGGKSPAYDGRKSLYTAGPLPFDSKEFVVNLAEKRADGSSGK----DRPFKVAVKNVT 262

Query:   123 KPDLYTLQQFLLRRHFEAPYEVIQVLDVVLRAAPSEKHTVVGRSFFSTDLGPV-----GQ 177
               DLY LQQFL R+  EAPY+ IQVLDVVLR  PS  +  VGRSFF T LG       G+
Sbjct:   263 STDLYQLQQFLDRKQREAPYDTIQVLDVVLRDKPSNDYVSVGRSFFHTSLGKDARDGRGE 322

Query:   178 LGDGVEYWRGYFQSLRPTQMGLSLNIDVSARSFYEPILVTEFVQYYC--RDLSRPLSDQV 235
             LGDG+EYWRGYFQSLR TQMGLSLNIDVSARSFYEPI+VT+F+  +   RDL+RPL D  
Sbjct:   323 LGDGIEYWRGYFQSLRLTQMGLSLNIDVSARSFYEPIVVTDFISKFLNIRDLNRPLRDSD 382

Query:   236 RLKV 239
             RLKV
Sbjct:   383 RLKV 386

GO:0003676 "nucleic acid binding" evidence=IEA

GO:0005737 "cytoplasm" evidence=ISM

GO:0008150 "biological_process" evidence=ND

GO:0048441 "petal development" evidence=RCA

GO:0048443 "stamen development" evidence=RCA

GO:0048481 "ovule development" evidence=RCA

UNIPROTKB|Q851R2 MEL1 "Protein argonaute MEL1" [Oryza sativa Japonica Group (taxid:39947)]

 Score = 680 (244.4 bits), Expect = 2.6e-66, P = 2.6e-66
 Identities = 130/238 (54%), Positives = 173/238 (72%)

Query:     4 PVRPGFGTVGKKCVVRANHFMVQLAERDIHHYDVSITPEVTSKKINRQIISQLINLYRLT 63
             P RPGFG  GKK ++RANHF+V +A+ ++ HYDVSI PE  S+  NR+++++LI L+  T
Sbjct:   200 PARPGFGAAGKKVMIRANHFLVNVADNNLFHYDVSINPESKSRATNREVLNELIKLHGKT 259

Query:    64 HLGERMPAYDGMKSIYTAGPLPFESKEFIIKLXXXXXXXXXXXXXXXERQFRVVIRLASK 123
              LG ++PAYDG KS+YTAG LPFES+EF++KL               ER++++ IR+A +
Sbjct:   260 SLGGKLPAYDGRKSLYTAGSLPFESEEFVVKLIDPEKKDKERA----EREYKITIRIAGR 315

Query:   124 PDLYTLQQFLLRRHFEAPYEVIQVLDVVLRAAPSEKHTVVGRSFFSTDLGPVGQLGDGVE 183
              DLY LQQFLL R  + P E IQVLDVVLR +PS  +  V RSFFST  G  G +G+G+E
Sbjct:   316 TDLYHLQQFLLGRQRDMPQETIQVLDVVLRESPSWNYVTVSRSFFSTQFGHRGDIGEGLE 375

Query:   184 YWRGYFQSLRPTQMGLSLNIDVSARSFYEPILVTEFVQYYC--RDLSRPLSDQVRLKV 239
              WRGY+QSLRPTQMGLSLNID+SA SF++P+ V +FV+ +   RD SRPLSD+ R+K+
Sbjct:   376 CWRGYYQSLRPTQMGLSLNIDISATSFFKPVTVIQFVEEFLNIRDTSRPLSDRDRVKI 433

GO:0005730 "nucleolus" evidence=IMP

GO:0005731 "nucleolus organizer region" evidence=IMP

GO:0005737 "cytoplasm" evidence=RCA

GO:0007140 "male meiosis" evidence=IMP

GO:0007143 "female meiosis" evidence=IMP

GO:0009561 "megagametogenesis" evidence=IMP

GO:0033169 "histone H3-K9 demethylation" evidence=IDA

GO:0035197 "siRNA binding" evidence=ISS

GO:0055046 "microgametogenesis" evidence=IMP

UNIPROTKB|Q69VD5 PHN1 "Protein argonaute PNH1" [Oryza sativa Japonica Group (taxid:39947)]

 Score = 625 (225.1 bits), Expect = 1.7e-60, P = 1.7e-60
 Identities = 119/241 (49%), Positives = 174/241 (72%)

Query:     1 MRFPVRPGFGTVGKKCVVRANHFMVQLAERDIHHYDVSITPEVTSKKINRQIISQLINLY 60
             + F  RPGFGTVG +CVV+ANHF+ +L ++D+  YDV ITPEV+S+ +NR I+S+L+ LY
Sbjct:   122 LSFCRRPGFGTVGARCVVKANHFLAELPDKDLTQYDVKITPEVSSRSVNRAIMSELVRLY 181

Query:    61 RLTHLGERMPAYDGMKSIYTAGPLPFESKEFIIKLXXXXXXXXXXXXXXXERQFRVVIRL 120
               + LG R+PAYDG K++YTAG LPF+++EF+++L               ER++RV I+ 
Sbjct:   182 HDSDLGGRLPAYDGRKNLYTAGTLPFDAREFVVRLTDDDDGTGVPPR---EREYRVAIKF 238

Query:   121 ASKPDLYTLQQFLLRRHFEAPYEVIQVLDVVLRAAPSEKHTVVGRSFFSTDLGPVGQLGD 180
             A++ DL+ L+QF+  R  +AP E +QVLD+VLR   + ++  +GRSF+S D+    +LGD
Sbjct:   239 AARADLHHLRQFIAGRQADAPQEALQVLDIVLRELANRRYVSIGRSFYSPDIRKPQRLGD 298

Query:   181 GVEYWRGYFQSLRPTQMGLSLNIDVSARSFYEPILVTEFV-QYYCRD-LSRPLSDQVRLK 238
             G++ W G++QS+RPTQMGLSLNID+S+ +F EP+ V EFV Q   +D +SRPLSD  R+K
Sbjct:   299 GLQSWCGFYQSIRPTQMGLSLNIDMSSTAFIEPLPVIEFVAQILGKDVISRPLSDANRIK 358

Query:   239 V 239
             +
Sbjct:   359 I 359

GO:0003743 "translation initiation factor activity" evidence=ISS

GO:0005737 "cytoplasm" evidence=IDA

GO:0006413 "translational initiation" evidence=ISS

GO:0019827 "stem cell maintenance" evidence=IMP

GO:0048366 "leaf development" evidence=IMP

TAIR|locus:2170897 AGO10 "ARGONAUTE 10" [Arabidopsis thaliana (taxid:3702)]

 Score = 594 (214.2 bits), Expect = 4.6e-57, P = 4.6e-57
 Identities = 115/239 (48%), Positives = 166/239 (69%)

Query:     3 FPVRPGFGTVGKKCVVRANHFMVQLAERDIHHYDVSITPEVTSKKINRQIISQLINLYRL 62
             F  RPGFGT+G KC+V+ANHF+  L  +D++ YDV+ITPEV+SK +NR II++L+ LY+ 
Sbjct:   128 FAPRPGFGTLGTKCIVKANHFLADLPTKDLNQYDVTITPEVSSKSVNRAIIAELVRLYKE 187

Query:    63 THLGERMPAYDGMKSIYTAGPLPFESKEFIIKLXXXXXXXXXXXXXXXERQFRVVIRLAS 122
             + LG R+PAYDG KS+YTAG LPF  KEF +K+               ER ++V I+  +
Sbjct:   188 SDLGRRLPAYDGRKSLYTAGELPFTWKEFSVKIVDEDDGIINGPKR--ERSYKVAIKFVA 245

Query:   123 KPDLYTLQQFLLRRHFEAPYEVIQVLDVVLRAAPSEKHTVVGRSFFSTDLGPVGQLGDGV 182
             + +++ L +FL  +  + P E +Q+LD+VLR    ++   VGRSFFS D+    +LG+G+
Sbjct:   246 RANMHHLGEFLAGKRADCPQEAVQILDIVLRELSVKRFCPVGRSFFSPDIKTPQRLGEGL 305

Query:   183 EYWRGYFQSLRPTQMGLSLNIDVSARSFYEPILVTEFV-QYYCRD-LSRPLSDQVRLKV 239
             E W G++QS+RPTQMGLSLNID+++ +F EP+ V EFV Q   +D LS+PLSD  R+K+
Sbjct:   306 ESWCGFYQSIRPTQMGLSLNIDMASAAFIEPLPVIEFVAQLLGKDVLSKPLSDSDRVKI 364

GO:0003676 "nucleic acid binding" evidence=IEA

GO:0003743 "translation initiation factor activity" evidence=ISS

GO:0005737 "cytoplasm" evidence=ISM;ISS

GO:0035019 "somatic stem cell maintenance" evidence=IMP

GO:0010586 "miRNA metabolic process" evidence=IMP

GO:0035198 "miRNA binding" evidence=IDA

GO:0006346 "methylation-dependent chromatin silencing" evidence=RCA

GO:0007267 "cell-cell signaling" evidence=RCA

GO:0009616 "virus induced gene silencing" evidence=RCA

GO:0009855 "determination of bilateral symmetry" evidence=RCA

GO:0009887 "organ morphogenesis" evidence=RCA

GO:0009944 "polarity specification of adaxial/abaxial axis" evidence=RCA

GO:0010014 "meristem initiation" evidence=RCA

GO:0010050 "vegetative phase change" evidence=RCA

GO:0010051 "xylem and phloem pattern formation" evidence=RCA

GO:0010073 "meristem maintenance" evidence=RCA

GO:0010267 "production of ta-siRNAs involved in RNA interference" evidence=RCA

GO:0016246 "RNA interference" evidence=RCA

GO:0035196 "production of miRNAs involved in gene silencing by miRNA" evidence=RCA

GO:0048439 "flower morphogenesis" evidence=RCA

GO:0048519 "negative regulation of biological process" evidence=RCA

UNIPROTKB|F1P3Z1 EIF2C4 "Protein argonaute-4" [Gallus gallus (taxid:9031)]

 Score = 400 (145.9 bits), Expect = 2.8e-36, P = 2.8e-36
 Identities = 89/240 (37%), Positives = 135/240 (56%)

Query:     4 PVRPGFGTVGKKCVVRANHFMVQLAERDIHHYDVSITPEVTSKKINRQIISQLINLYRLT 63
             P RPG GTVGK   + ANHF VQ+ + D++HYDV I PE   +++NR+++  ++  +++ 
Sbjct:     2 PRRPGLGTVGKPIRLLANHFQVQIPKIDVYHYDVDIKPEKRPRRVNREVVDTMVRHFKMQ 61

Query:    64 HLGERMPAYDGMKSIYTAGPLPFESKEFIIKLXXXXXXXXXXXXXXXERQFRVVIRLASK 123
               G+R P YDG +++YTA PLP       +++               ++ F+V I+  S 
Sbjct:    62 IFGDRQPGYDGKRNMYTAHPLPIGRDRVDMEVTLPGEGK--------DQTFKVSIQWVSV 113

Query:   124 PDLYTLQQFLLRRHFEAPYEVIQVLDVVLRAAPSEKHTVVGRSFFSTDLGPVGQLGDGVE 183
               L  L + L     E P + +Q LDV+ R  PS ++T VGRSFFS   G    LG G E
Sbjct:   114 VSLQLLLEALAGHLNEVPEDSVQALDVITRHLPSMRYTPVGRSFFSPPEGYYHPLGGGRE 173

Query:   184 YWRGYFQSLRPTQMGLSLNIDVSARSFY--EPIL--VTEFVQYY-CRDLSRPLSDQVRLK 238
              W G+ QS+RP    + LNIDVSA +FY  +PI+  + E +      + ++PL+D  R+K
Sbjct:   174 VWFGFHQSVRPAMWNMMLNIDVSATAFYRAQPIIEFMCEVLDIQNINEQTKPLTDSQRVK 233

GO:0000932 "cytoplasmic mRNA processing body" evidence=IEA

GO:0003723 "RNA binding" evidence=IEA

GO:0006402 "mRNA catabolic process" evidence=IEA

GO:0035068 "micro-ribonucleoprotein complex" evidence=IEA

GO:0035278 "negative regulation of translation involved in gene silencing by miRNA" evidence=IEA

MGI|MGI:1924100 Ago4 "argonaute RISC catalytic subunit 4" [Mus musculus (taxid:10090)]

 Score = 399 (145.5 bits), Expect = 3.7e-36, P = 3.7e-36
 Identities = 88/240 (36%), Positives = 135/240 (56%)

Query:     4 PVRPGFGTVGKKCVVRANHFMVQLAERDIHHYDVSITPEVTSKKINRQIISQLINLYRLT 63
             P RPG GTVGK   + ANHF VQ+ + D++HYDV I PE   +++NR+++  ++  +++ 
Sbjct:    16 PRRPGLGTVGKPIRLLANHFQVQIPKIDVYHYDVDIKPEKRPRRVNREVVDTMVRHFKMQ 75

Query:    64 HLGERMPAYDGMKSIYTAGPLPFESKEFIIKLXXXXXXXXXXXXXXXERQFRVVIRLASK 123
               G+R P YDG +++YTA PLP       +++               ++ F+V ++  S 
Sbjct:    76 IFGDRQPGYDGKRNMYTAHPLPIGRDRIDMEVTLPGEGK--------DQTFKVSVQWVSV 127

Query:   124 PDLYTLQQFLLRRHFEAPYEVIQVLDVVLRAAPSEKHTVVGRSFFSTDLGPVGQLGDGVE 183
               L  L + L     E P + +Q LDV+ R  PS ++T VGRSFFS   G    LG G E
Sbjct:   128 VSLQLLLEALAGHLNEVPDDSVQALDVITRHLPSMRYTPVGRSFFSPPEGYYHPLGGGRE 187

Query:   184 YWRGYFQSLRPTQMGLSLNIDVSARSFY--EPIL--VTEFVQYY-CRDLSRPLSDQVRLK 238
              W G+ QS+RP    + LNIDVSA +FY  +PI+  + E +      + ++PL+D  R+K
Sbjct:   188 VWFGFHQSVRPAMWNMMLNIDVSATAFYRAQPIIEFMCEVLDIQNINEQTKPLTDSQRVK 247

GO:0000932 "cytoplasmic mRNA processing body" evidence=IDA

GO:0003676 "nucleic acid binding" evidence=IEA

GO:0003723 "RNA binding" evidence=IDA

GO:0005737 "cytoplasm" evidence=IEA

GO:0006402 "mRNA catabolic process" evidence=ISO

GO:0006417 "regulation of translation" evidence=IEA

GO:0030529 "ribonucleoprotein complex" evidence=IEA

GO:0031047 "gene silencing by RNA" evidence=IEA

GO:0035068 "micro-ribonucleoprotein complex" evidence=IDA

GO:0035278 "negative regulation of translation involved in gene silencing by miRNA" evidence=ISO

UNIPROTKB|F1MXK6 EIF2C4 "Uncharacterized protein" [Bos taurus (taxid:9913)]

 Score = 398 (145.2 bits), Expect = 4.6e-36, P = 4.6e-36
 Identities = 88/240 (36%), Positives = 135/240 (56%)

Query:     4 PVRPGFGTVGKKCVVRANHFMVQLAERDIHHYDVSITPEVTSKKINRQIISQLINLYRLT 63
             P RPG GTVGK   + ANHF VQ+ + D++HYDV I PE   +++NR+++  ++  +++ 
Sbjct:    15 PRRPGLGTVGKPIRLLANHFQVQIPKIDVYHYDVDIKPEKRPRRVNREVVDTMVRHFKMQ 74

Query:    64 HLGERMPAYDGMKSIYTAGPLPFESKEFIIKLXXXXXXXXXXXXXXXERQFRVVIRLASK 123
               G+R P YDG +++YTA PLP       +++               ++ F+V ++  S 
Sbjct:    75 IFGDRQPGYDGKRNMYTAHPLPIGRDRVDMEVTLPGEGK--------DQTFKVSVQWVSV 126

Query:   124 PDLYTLQQFLLRRHFEAPYEVIQVLDVVLRAAPSEKHTVVGRSFFSTDLGPVGQLGDGVE 183
               L  L + L     E P + +Q LDV+ R  PS ++T VGRSFFS   G    LG G E
Sbjct:   127 VSLQLLLEALAGHLNEVPDDSVQALDVITRHLPSMRYTPVGRSFFSPPEGYYHPLGGGRE 186

Query:   184 YWRGYFQSLRPTQMGLSLNIDVSARSFY--EPIL--VTEFVQYY-CRDLSRPLSDQVRLK 238
              W G+ QS+RP    + LNIDVSA +FY  +PI+  + E +      + ++PL+D  R+K
Sbjct:   187 VWFGFHQSVRPAMWNMMLNIDVSATAFYRAQPIIEFMCEVLDIQNINEQTKPLTDSQRVK 246

GO:0035278 "negative regulation of translation involved in gene silencing by miRNA" evidence=IEA

GO:0035068 "micro-ribonucleoprotein complex" evidence=IEA

GO:0006402 "mRNA catabolic process" evidence=IEA

GO:0003723 "RNA binding" evidence=IEA

GO:0000932 "cytoplasmic mRNA processing body" evidence=IEA

UNIPROTKB|Q9HCK5 EIF2C4 "Protein argonaute-4" [Homo sapiens (taxid:9606)]

 Score = 398 (145.2 bits), Expect = 4.7e-36, P = 4.7e-36
 Identities = 88/240 (36%), Positives = 135/240 (56%)

Query:     4 PVRPGFGTVGKKCVVRANHFMVQLAERDIHHYDVSITPEVTSKKINRQIISQLINLYRLT 63
             P RPG GTVGK   + ANHF VQ+ + D++HYDV I PE   +++NR+++  ++  +++ 
Sbjct:    16 PRRPGLGTVGKPIRLLANHFQVQIPKIDVYHYDVDIKPEKRPRRVNREVVDTMVRHFKMQ 75

Query:    64 HLGERMPAYDGMKSIYTAGPLPFESKEFIIKLXXXXXXXXXXXXXXXERQFRVVIRLASK 123
               G+R P YDG +++YTA PLP       +++               ++ F+V ++  S 
Sbjct:    76 IFGDRQPGYDGKRNMYTAHPLPIGRDRVDMEVTLPGEGK--------DQTFKVSVQWVSV 127

Query:   124 PDLYTLQQFLLRRHFEAPYEVIQVLDVVLRAAPSEKHTVVGRSFFSTDLGPVGQLGDGVE 183
               L  L + L     E P + +Q LDV+ R  PS ++T VGRSFFS   G    LG G E
Sbjct:   128 VSLQLLLEALAGHLNEVPDDSVQALDVITRHLPSMRYTPVGRSFFSPPEGYYHPLGGGRE 187

Query:   184 YWRGYFQSLRPTQMGLSLNIDVSARSFY--EPIL--VTEFVQYY-CRDLSRPLSDQVRLK 238
              W G+ QS+RP    + LNIDVSA +FY  +PI+  + E +      + ++PL+D  R+K
Sbjct:   188 VWFGFHQSVRPAMWNMMLNIDVSATAFYRAQPIIEFMCEVLDIQNINEQTKPLTDSQRVK 247

GO:0003723 "RNA binding" evidence=IEA

GO:0035068 "micro-ribonucleoprotein complex" evidence=IEA

GO:0000932 "cytoplasmic mRNA processing body" evidence=IEA

GO:0006402 "mRNA catabolic process" evidence=IDA

GO:0035278 "negative regulation of translation involved in gene silencing by miRNA" evidence=IDA

GO:0005829 "cytosol" evidence=TAS

GO:0007219 "Notch signaling pathway" evidence=TAS

GO:0010467 "gene expression" evidence=TAS

GO:0005515 "protein binding" evidence=IPI

UNIPROTKB|F1SV64 EIF2C4 "Uncharacterized protein" [Sus scrofa (taxid:9823)]

 Score = 398 (145.2 bits), Expect = 4.7e-36, P = 4.7e-36
 Identities = 88/240 (36%), Positives = 135/240 (56%)

Query:     4 PVRPGFGTVGKKCVVRANHFMVQLAERDIHHYDVSITPEVTSKKINRQIISQLINLYRLT 63
             P RPG GTVGK   + ANHF VQ+ + D++HYDV I PE   +++NR+++  ++  +++ 
Sbjct:    16 PRRPGLGTVGKPIRLLANHFQVQIPKIDVYHYDVDIKPEKRPRRVNREVVDTMVRHFKIQ 75

Query:    64 HLGERMPAYDGMKSIYTAGPLPFESKEFIIKLXXXXXXXXXXXXXXXERQFRVVIRLASK 123
               G+R P YDG +++YTA PLP       +++               ++ F+V ++  S 
Sbjct:    76 IFGDRQPGYDGKRNMYTAHPLPIGRDRVDMEVTLPGEGK--------DQTFKVSVQWVSV 127

Query:   124 PDLYTLQQFLLRRHFEAPYEVIQVLDVVLRAAPSEKHTVVGRSFFSTDLGPVGQLGDGVE 183
               L  L + L     E P + +Q LDV+ R  PS ++T VGRSFFS   G    LG G E
Sbjct:   128 VSLQLLLEALAGHLNEVPDDSVQALDVITRHLPSMRYTPVGRSFFSPPEGYYHPLGGGRE 187

Query:   184 YWRGYFQSLRPTQMGLSLNIDVSARSFY--EPIL--VTEFVQYY-CRDLSRPLSDQVRLK 238
              W G+ QS+RP    + LNIDVSA +FY  +PI+  + E +      + ++PL+D  R+K
Sbjct:   188 VWFGFHQSVRPAMWNMMLNIDVSATAFYRAQPIIEFMCEVLDIQNINEQTKPLTDSQRVK 247

GO:0035278 "negative regulation of translation involved in gene silencing by miRNA" evidence=IEA

GO:0035068 "micro-ribonucleoprotein complex" evidence=IEA

GO:0006402 "mRNA catabolic process" evidence=IEA

GO:0003723 "RNA binding" evidence=IEA

GO:0000932 "cytoplasmic mRNA processing body" evidence=IEA

RGD|1304583 Ago4 "argonaute RISC catalytic component 4" [Rattus norvegicus (taxid:10116)]

 Score = 397 (144.8 bits), Expect = 4.9e-36, P = 4.9e-36
 Identities = 88/240 (36%), Positives = 135/240 (56%)

Query:     4 PVRPGFGTVGKKCVVRANHFMVQLAERDIHHYDVSITPEVTSKKINRQIISQLINLYRLT 63
             P RPG GTVGK   + ANHF VQ+ + D++HYDV I PE   +++NR+++  ++  +++ 
Sbjct:    15 PRRPGLGTVGKPIRLLANHFQVQIPKIDVYHYDVDIKPEKRPRRVNREVVDTMVRHFKMQ 74

Query:    64 HLGERMPAYDGMKSIYTAGPLPFESKEFIIKLXXXXXXXXXXXXXXXERQFRVVIRLASK 123
               G+R P YDG +++YTA PLP       +++               ++ F+V ++  S 
Sbjct:    75 IFGDRQPGYDGKRNMYTAHPLPIGRDRVDMEVTLPGEGK--------DQTFKVSVQWVSV 126

Query:   124 PDLYTLQQFLLRRHFEAPYEVIQVLDVVLRAAPSEKHTVVGRSFFSTDLGPVGQLGDGVE 183
               L  L + L     E P + +Q LDV+ R  PS ++T VGRSFFS   G    LG G E
Sbjct:   127 VSLQLLLEALAGHLSEVPDDSVQALDVITRHLPSMRYTPVGRSFFSPPEGYYHPLGGGRE 186

Query:   184 YWRGYFQSLRPTQMGLSLNIDVSARSFY--EPIL--VTEFVQYY-CRDLSRPLSDQVRLK 238
              W G+ QS+RP    + LNIDVSA +FY  +PI+  + E +      + ++PL+D  R+K
Sbjct:   187 VWFGFHQSVRPAMWKMMLNIDVSATAFYRAQPIIEFMCEVLDIQNINEQTKPLTDSQRVK 246

GO:0000932 "cytoplasmic mRNA processing body" evidence=ISO

GO:0003674 "molecular_function" evidence=ND

GO:0003676 "nucleic acid binding" evidence=IEA

GO:0003723 "RNA binding" evidence=ISO

GO:0005575 "cellular_component" evidence=ND

GO:0006402 "mRNA catabolic process" evidence=ISO

GO:0008150 "biological_process" evidence=ND

GO:0035068 "micro-ribonucleoprotein complex" evidence=ISO

GO:0035278 "negative regulation of translation involved in gene silencing by miRNA" evidence=ISO

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input: AGO904 argonaute protein group (987 aa) (Populus trichocarpa)

Predicted Functional Partners:

Sorry, there are no predicted associations at the current settings.

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	240
PLN03202	900	PLN03202, PLN03202, protein argonaute; Provisional	1e-35
pfam08699	52	pfam08699, DUF1785, Domain of unknown function (DU	9e-23

>gnl|CDD|215631 PLN03202, PLN03202, protein argonaute; Provisional

 Score =  133 bits (336), Expect = 1e-35
 Identities = 84/244 (34%), Positives = 119/244 (48%), Gaps = 27/244 (11%)

Query: 2   RFPV-RPGFGTVGKKCVVRANHFMVQLAERDIH--HYDVSITPE----VTSKKINRQIIS 54
           R P+ R GFG+ G+K  +  NHF V +   D H  HY VS+T E    V  K I R++I 
Sbjct: 31  RLPMARRGFGSKGQKIQLLTNHFKVSVNNPDGHFFHYSVSLTYEDGRPVDGKGIGRKVID 90

Query: 55  QLINLYRLTHLGERMPAYDGMKSIYTAGPLPFESKEFIIKL-------------PDSDPR 101
           ++   Y  + L  +  AYDG KS++T G LP    EF + L             P  +  
Sbjct: 91  KVQETYS-SDLAGKDFAYDGEKSLFTVGALPQNKLEFTVVLEDVSSNRNNGNGSPVGNGS 149

Query: 102 PSSSTRPRRER-----QFRVVIRLASKPDLYTLQQFLLRRHFEAPYEVIQVLDVVLRAAP 156
           P+   R R  R      F+V I  A+K  +  +   L  +  E   + ++VLD++LR   
Sbjct: 150 PNGGDRKRSRRPYQSKTFKVEISFAAKIPMQAIANALRGQESENSQDALRVLDIILRQHA 209

Query: 157 SEKHTVVGR-SFFSTDLGPVGQLGDGVEYWRGYFQSLRPTQMGLSLNIDVSARSFYEPIL 215
           +++  ++ R SFF  D      LG GV   RG+  S R TQ GLSLNIDVS     +P  
Sbjct: 210 AKQGCLLVRQSFFHNDPKNFVDLGGGVLGCRGFHSSFRTTQGGLSLNIDVSTTMIVQPGP 269

Query: 216 VTEF 219
           V +F
Sbjct: 270 VVDF 273

Length = 900

>gnl|CDD|219976 pfam08699, DUF1785, Domain of unknown function (DUF1785)

 Score = 87.2 bits (217), Expect = 9e-23
 Identities = 33/53 (62%), Positives = 39/53 (73%), Gaps = 1/53 (1%)

Query: 161 TVVGRSFFSTDLGPVGQLGDGVEYWRGYFQSLRPTQMGLSLNIDVSARSFYEP 213
             VGRSFFS   G    LG G+E WRG+FQS+RPTQ GLSLN+DVS  +FY+P
Sbjct: 1   IAVGRSFFSISFGH-RDLGGGLEAWRGFFQSVRPTQGGLSLNVDVSTTAFYKP 52

This region is found in argonaute proteins and often co-occurs with pfam02179 and pfam02171. Length = 52

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	240
PLN03202	900	protein argonaute; Provisional	100.0
KOG1042	845	consensus Germ-line stem cell division protein Hiw	99.96
KOG1041	876	consensus Translation initiation factor 2C (eIF-2C	99.94
PF08699	52	DUF1785: Domain of unknown function (DUF1785); Int	99.84

>PLN03202 protein argonaute; Provisional

Probab=100.00  E-value=1e-42  Score=337.54  Aligned_cols=222  Identities=36%  Similarity=0.529  Sum_probs=185.0

Q ss_pred             CCCCCCCCCCCCCeEEEEeeeeEeEcC--CCcEEEeeeEecCC----CCchHHHHHHHHHHHHHhhhcccCCCcceecCc
Q 026337            2 RFPVRPGFGTVGKKCVVRANHFMVQLA--ERDIHHYDVSITPE----VTSKKINRQIISQLINLYRLTHLGERMPAYDGM   75 (240)
Q Consensus         2 ~~p~RP~~Gt~G~~i~l~tN~f~i~~~--~~~iy~Y~V~i~p~----~~~~~~~r~i~~~l~~~~~~~~~~~~~~~yDG~   75 (240)
                      .+|+||||||.|++|+|+||||+|.++  +..+|||+|+|+|+    ..+++++++|++.++++... .+.+..+||||+
T Consensus        32 ~~~~RPg~Gt~G~~i~l~aN~f~v~~~~~~~~ly~Y~V~i~p~~~~~~~~~~~~~~i~~~~~~~~~~-~~~~~~~~~Dg~  110 (900)
T PLN03202         32 LPMARRGFGSKGQKIQLLTNHFKVSVNNPDGHFFHYSVSLTYEDGRPVDGKGIGRKVIDKVQETYSS-DLAGKDFAYDGE  110 (900)
T ss_pred             ccCCCCCCCCCCCEEEEEeeEEEEeccCCCCcEEEEEEEeccCCCCcccchhhhHHHHHHHHHhhHH-hhCCCceeecCc
Confidence            467899999999999999999999974  67899999999964    34577888899988876543 344447999999


Q ss_pred             cceeecCCCCCCcceEEEEcCCCCCCC----------CCC--------CCCCCCceEEEEEEeecccChHHHHHHHccCC
Q 026337           76 KSIYTAGPLPFESKEFIIKLPDSDPRP----------SSS--------TRPRRERQFRVVIRLASKPDLYTLQQFLLRRH  137 (240)
Q Consensus        76 ~~lys~~~L~~~~~~~~v~~~~~~~~~----------~~~--------~~~~~~~~~~v~i~~~~~i~~~~l~~~~~~~~  137 (240)
                      ++|||+.+|+.+..++.|++.++.+..          +.+        .+..+++.|+|+|++++++++++|.+|+.|..
T Consensus       111 ~~l~s~~~L~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~i~~~~~i~~~~L~~~l~~~~  190 (900)
T PLN03202        111 KSLFTVGALPQNKLEFTVVLEDVSSNRNNGNGSPVGNGSPNGGDRKRSRRPYQSKTFKVEISFAAKIPMQAIANALRGQE  190 (900)
T ss_pred             cceEECccCCCCCceEEEEecccccccccccccccccCCccccccccccccCCCceEEEEEEEccccCHHHHHHHHcCCC
Confidence            999999999976567778776421100          000        00124688999999999999999999999998


Q ss_pred             CCCchhHHHHHHHHhhcCCCC-CccccccccccCCCCCcccCCCcEEEEeeeeeeeeeeCCeeEEeeeccccccccCCcH
Q 026337          138 FEAPYEVIQVLDVVLRAAPSE-KHTVVGRSFFSTDLGPVGQLGDGVEYWRGYFQSLRPTQMGLSLNIDVSARSFYEPILV  216 (240)
Q Consensus       138 ~~~~~~~iq~Lniilr~~~~~-~~~~~Gr~ff~~~~~~~~~l~~gle~~~G~~~Svr~~~~~l~LNvD~a~~~F~~~~~l  216 (240)
                      .+.+.++|||||||+|+.++. .++.+||+||........++++|+|+|+||++||||++++|+||+|++|++|++++||
T Consensus       191 ~~~~~~~iq~lnivlr~~~~~~~~~~~gr~ff~~~~~~~~~l~~gle~~~G~~~Svr~~~~~l~LnvDvs~~~F~~~~~l  270 (900)
T PLN03202        191 SENSQDALRVLDIILRQHAAKQGCLLVRQSFFHNDPKNFVDLGGGVLGCRGFHSSFRTTQGGLSLNIDVSTTMIVQPGPV  270 (900)
T ss_pred             CCCcHHHHHHHHHHHhhhhhhCCCceeccccCCCCCcccccCCCceEEeeeeeeEeeeccCceEEeeeeeeeeeecCCcH
Confidence            788899999999999999985 5899999999765434567899999999999999999999999999999999999999


Q ss_pred             HHHHHHHh
Q 026337          217 TEFVQYYC  224 (240)
Q Consensus       217 ~d~i~~~~  224 (240)
                      +|+|.++.
T Consensus       271 ~~~l~~~~  278 (900)
T PLN03202        271 VDFLIANQ  278 (900)
T ss_pred             HHHHHHhc
Confidence            99998874

>KOG1042 consensus Germ-line stem cell division protein Hiwi/Piwi; negative developmental regulator [Cell cycle control, cell division, chromosome partitioning]

Probab=99.96  E-value=2.5e-29  Score=226.99  Aligned_cols=181  Identities=19%  Similarity=0.348  Sum_probs=152.2

Q ss_pred             CCCCCCeEEEEeeeeEeEc-CCCcEEEeeeEecCCCCchHHHHHHHHHHHHHhhhcccCCCcceecCccceeecCCCCCC
Q 026337            9 FGTVGKKCVVRANHFMVQL-AERDIHHYDVSITPEVTSKKINRQIISQLINLYRLTHLGERMPAYDGMKSIYTAGPLPFE   87 (240)
Q Consensus         9 ~Gt~G~~i~l~tN~f~i~~-~~~~iy~Y~V~i~p~~~~~~~~r~i~~~l~~~~~~~~~~~~~~~yDG~~~lys~~~L~~~   87 (240)
                      .|+.|.+|+|.||||++.. |++.+|||+|+|.|++++++++++++.    ++. +..| ..++|||. .||.+++++.+
T Consensus        88 tGssG~pv~l~tN~f~l~t~p~w~iyqYhVef~P~ves~rlR~~~L~----~h~-~lig-~~~~FDG~-iLfl~~k~eq~  160 (845)
T KOG1042|consen   88 TGSSGIPVKLQTNFFRLMTRPDWSIYQYHVEFEPDVESRRLREALLY----NHT-DLIG-KGYAFDGT-ILFLKEKFEQK  160 (845)
T ss_pred             cCCCCceEEEEeceeeeccCCCcEEEEEEEeeccccccHHHHHHHHH----HhH-hhhc-cceeecce-eehhhHHHhhh
Confidence            6999999999999999876 489999999999999999998876543    332 3344 47899995 89999999853


Q ss_pred             cceEEEEcCCCCCCCCCCCCCCCCceEEEEEEeecccChHHHHHHHccCCCCCchhHHHHHHHHhhcCCC-CCccccccc
Q 026337           88 SKEFIIKLPDSDPRPSSSTRPRRERQFRVVIRLASKPDLYTLQQFLLRRHFEAPYEVIQVLDVVLRAAPS-EKHTVVGRS  166 (240)
Q Consensus        88 ~~~~~v~~~~~~~~~~~~~~~~~~~~~~v~i~~~~~i~~~~l~~~~~~~~~~~~~~~iq~Lniilr~~~~-~~~~~~Gr~  166 (240)
                       ...   +...         ...+..++|+|++++++..             .++++||++|+|+|+.+. +++.++|||
T Consensus       161 -~te---l~~k---------s~~ge~i~I~ik~~~~~~~-------------t~p~~iqv~NlI~RR~~k~L~L~qigRn  214 (845)
T KOG1042|consen  161 -QTE---LVSK---------SRDGELIKITIKLTNELPS-------------TDPQCIQVFNLILRRSMKGLNLTQIGRN  214 (845)
T ss_pred             -hhe---eecc---------cCCCceEEEEEEEeccccC-------------CChhHHHHHHHHHHHHHhhccHHHhhhc
Confidence             211   1111         0567889999999998874             357899999999999998 799999999


Q ss_pred             cccCCCCCcccC-CCcEEEEeeeeeeeeeeCCeeEEeeeccccccccCCcHHHHHHHHhh
Q 026337          167 FFSTDLGPVGQL-GDGVEYWRGYFQSLRPTQMGLSLNIDVSARSFYEPILVTEFVQYYCR  225 (240)
Q Consensus       167 ff~~~~~~~~~l-~~gle~~~G~~~Svr~~~~~l~LNvD~a~~~F~~~~~l~d~i~~~~~  225 (240)
                      ||++.  .+.++ .+.+++|+||-+|||..+..++||.|++|++.+ ..+++|+|.++.+
T Consensus       215 yynp~--~~i~ip~~km~lwPGy~tSIrq~E~~illctei~hKvmR-~ETvy~~m~~~~~  271 (845)
T KOG1042|consen  215 YYDPR--AKIEIPEFKMSLWPGYETSIRQHENDILLCTEISHKVMR-TETVYDIMRSCQH  271 (845)
T ss_pred             cCCCC--cccccccccceecCcchhHHHHhhhceeeehhhhhhHhh-hhHHHHHHHHHhh
Confidence            99988  46778 689999999999999999999999999999987 6899999988743

>KOG1041 consensus Translation initiation factor 2C (eIF-2C) and related proteins [Translation, ribosomal structure and biogenesis]

Probab=99.94  E-value=5.1e-26  Score=219.95  Aligned_cols=219  Identities=38%  Similarity=0.549  Sum_probs=172.5

Q ss_pred             CCCCCCCCCCCCCeEEEEeeeeEeEc--CCCc-EEEeeeEecCCCCchHHHH-HHHHHHHHHhhhcccCCCcceecCccc
Q 026337            2 RFPVRPGFGTVGKKCVVRANHFMVQL--AERD-IHHYDVSITPEVTSKKINR-QIISQLINLYRLTHLGERMPAYDGMKS   77 (240)
Q Consensus         2 ~~p~RP~~Gt~G~~i~l~tN~f~i~~--~~~~-iy~Y~V~i~p~~~~~~~~r-~i~~~l~~~~~~~~~~~~~~~yDG~~~   77 (240)
                      ..+.||+.|+.|+++.|.+|||.+..  ++.. +++|+|++.++...++..+ .+++..........++...++|||.++
T Consensus        44 ~~~~rp~~~~~g~~i~~~~n~f~~~~~~~~~~~~~~y~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~YDg~~~  123 (876)
T KOG1041|consen   44 FPMNRPGGGTKGKKIMVLVNHFKVDLKFTEESLFVHYSVGIFNEHGRRKVQCLRFFLDKVKNPELFELKSGGPAYDGQKT  123 (876)
T ss_pred             ccccCCCCCccceEEEEeeeEEEeccccCCcceEEEeeeeecCCCCchHHHHHHHHHHHHhccccccccCCcccccCCce
Confidence            35679999999999999999999876  4555 9999999999987777764 555544443222234555667999999


Q ss_pred             eeecCCCCCCcc--eEEEEcCCCCCCCCCCCCCCCCceEEEEEEeecccChHHHHHHHccCCCCCchhHHHHHHHHhhcC
Q 026337           78 IYTAGPLPFESK--EFIIKLPDSDPRPSSSTRPRRERQFRVVIRLASKPDLYTLQQFLLRRHFEAPYEVIQVLDVVLRAA  155 (240)
Q Consensus        78 lys~~~L~~~~~--~~~v~~~~~~~~~~~~~~~~~~~~~~v~i~~~~~i~~~~l~~~~~~~~~~~~~~~iq~Lniilr~~  155 (240)
                      |||..+++....  ++.+..+.+            ...+.++|+++..+.+..+..++.+.....+.+++|+|++++++.
T Consensus       124 lyt~~~~~~~~~~~~~~~~~~~~------------~~~~~~~ik~~~~~~~~~~~~~~~~~~~~~~~~~~~~ld~~~~~~  191 (876)
T KOG1041|consen  124 LYTKLELPEGVVTLDFDVISPKE------------WKKFKVSIKKVSEVVLTKLNGFIYTRGENAPRDANQTLDVVLREI  191 (876)
T ss_pred             eEeccccccccceEEEEecCCCC------------CcceEEEEEecccccccCccccccCccccCchhHHHHHHHHHHhh
Confidence            999777774222  344433322            122999999999888888888888877777899999999999999


Q ss_pred             CCCC-ccccccccccCCCCCcccCCCcEEEEeeeeeeeeeeCCeeEEeeeccccccccCCcHHHHHHHHhhcCCCCCC
Q 026337          156 PSEK-HTVVGRSFFSTDLGPVGQLGDGVEYWRGYFQSLRPTQMGLSLNIDVSARSFYEPILVTEFVQYYCRDLSRPLS  232 (240)
Q Consensus       156 ~~~~-~~~~Gr~ff~~~~~~~~~l~~gle~~~G~~~Svr~~~~~l~LNvD~a~~~F~~~~~l~d~i~~~~~~~~~~l~  232 (240)
                      +..+ +..+|++||.........+++|.|+|.||++|+|+++|+++||+|+++++||++.+|.+++++++....++++
T Consensus       192 ~s~~~~~~~~~sff~~~~~~~~~l~~g~e~~~Gf~~s~r~~~~~~~l~id~~~~~F~k~~~~~~~l~~~~~~~~~~~~  269 (876)
T KOG1041|consen  192 ATSQGLNNVGYSFFGNDTREPAKLGGGVEIWEGFHKSIRPTQGGLSLNIDVKTTAFYKGTPVIEFLKKILEIKTRAFH  269 (876)
T ss_pred             hchhcccccchheecCCCCCccccCCCceeeeeeeeeeeeccCceEEeeeeeeeeeecCcchHHHHHhhhcCcccccc
Confidence            9966 9999999998632234458999999999999999999999999999999999999999999999754433433

>PF08699 DUF1785: Domain of unknown function (DUF1785); InterPro: IPR014811 This region is found in argonaute [] proteins and often co-occurs with IPR003103 from INTERPRO and IPR003165 from INTERPRO

Probab=99.84  E-value=1.8e-21  Score=124.34  Aligned_cols=52  Identities=62%  Similarity=1.055  Sum_probs=42.3

Q ss_pred             cccccccccCCCCCcccCCCcEEEEeeeeeeeeeeCCeeEEeeeccccccccC
Q 026337          161 TVVGRSFFSTDLGPVGQLGDGVEYWRGYFQSLRPTQMGLSLNIDVSARSFYEP  213 (240)
Q Consensus       161 ~~~Gr~ff~~~~~~~~~l~~gle~~~G~~~Svr~~~~~l~LNvD~a~~~F~~~  213 (240)
                      +.+||+||+++.. ..+|++|+|+|+||||||||++++|+||||+|+++||++
T Consensus         1 ~~vgrsFF~~~~~-~~~l~~Gle~~rG~~qSvRp~~~~l~lNvDvs~~aF~~p   52 (52)
T PF08699_consen    1 TAVGRSFFPPSGG-PVDLGGGLEAWRGFFQSVRPTQGGLLLNVDVSHTAFYKP   52 (52)
T ss_dssp             EEETTEEEE-------EEETTEEEEEEEEEEEEEETTEEEEEEECCEECCC--
T ss_pred             CccccccCCCCCC-CccCCCcEEEeEeEEeeeEEcCCCCEEEEeCceeeEECc
Confidence            4689999998743 378999999999999999999999999999999999975

; PDB: 1R6Z_P 3MJ0_A 4EI1_A 4F3T_A 4EI3_A 1R4K_A.

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	240
4ei1_A	859	Crystal Structure Of Human Argonaute2 Length = 859		6e-39
4f3t_A	861	Human Argonaute-2 - Mir-20a Complex Length = 861		7e-39

>pdb|4EI1|A Chain A, Crystal Structure Of Human Argonaute2 Length = 859

Iteration: 1
 Score =  157 bits (396), Expect = 6e-39,   Method: Compositional matrix adjust.
 Identities = 90/243 (37%), Positives = 133/243 (54%), Gaps = 19/243 (7%)
Query: 4   PVRPGFGTVGKKCVVRANHFMVQLAERDIHHYDVSITPEVTSKKINRQIISQLINLYRLT 63
           P RP FGT G+   ++AN F + + + DI+HY++ I PE   +++NR+I+  ++  ++  
Sbjct: 26  PPRPDFGTSGRTIKLQANFFEMDIPKIDIYHYELDIKPEKCPRRVNREIVEHMVQHFKTQ 85
Query: 64  HLGERMPAYDGMKSIYTAGPLPFESKEFIIKLXXXXXXXXXXXXXXXERQFRVVIRLASK 123
             G+R P +DG K++YTA PLP    +  +++               +R F+V I+  S 
Sbjct: 86  IFGDRKPVFDGRKNLYTAMPLPIGRDKVELEVTLPGEGK--------DRIFKVSIKWVSC 137
Query: 124 PDLYTLQQFLLRRHFEAPYEVIQVLDVVLRAAPSEKHTVVGRSFFSTDLGPVGQLGDGVE 183
             L  L   L  R    P+E IQ LDVV+R  PS ++T VGRSFF+   G    LG G E
Sbjct: 138 VSLQALHDALSGRLPSVPFETIQALDVVMRHLPSMRYTPVGRSFFTASEGCSNPLGGGRE 197
Query: 184 YWRGYFQSLRPTQMGLSLNIDVSARSFYEPILVTEFVQYYCRDLS--------RPLSDQV 235
            W G+ QS+RP+   + LNIDVSA +FY+   V EFV   C  L         +PL+D  
Sbjct: 198 VWFGFHQSVRPSLWKMMLNIDVSATAFYKAQPVIEFV---CEVLDFKSIEEQQKPLTDSQ 254
Query: 236 RLK 238
           R+K
Sbjct: 255 RVK 257

>pdb|4F3T|A Chain A, Human Argonaute-2 - Mir-20a Complex Length = 861

Iteration: 1
 Score =  157 bits (396), Expect = 7e-39,   Method: Compositional matrix adjust.
 Identities = 90/243 (37%), Positives = 133/243 (54%), Gaps = 19/243 (7%)
Query: 4   PVRPGFGTVGKKCVVRANHFMVQLAERDIHHYDVSITPEVTSKKINRQIISQLINLYRLT 63
           P RP FGT G+   ++AN F + + + DI+HY++ I PE   +++NR+I+  ++  ++  
Sbjct: 28  PPRPDFGTSGRTIKLQANFFEMDIPKIDIYHYELDIKPEKCPRRVNREIVEHMVQHFKTQ 87
Query: 64  HLGERMPAYDGMKSIYTAGPLPFESKEFIIKLXXXXXXXXXXXXXXXERQFRVVIRLASK 123
             G+R P +DG K++YTA PLP    +  +++               +R F+V I+  S 
Sbjct: 88  IFGDRKPVFDGRKNLYTAMPLPIGRDKVELEVTLPGEGK--------DRIFKVSIKWVSC 139
Query: 124 PDLYTLQQFLLRRHFEAPYEVIQVLDVVLRAAPSEKHTVVGRSFFSTDLGPVGQLGDGVE 183
             L  L   L  R    P+E IQ LDVV+R  PS ++T VGRSFF+   G    LG G E
Sbjct: 140 VSLQALHDALSGRLPSVPFETIQALDVVMRHLPSMRYTPVGRSFFTASEGCSNPLGGGRE 199
Query: 184 YWRGYFQSLRPTQMGLSLNIDVSARSFYEPILVTEFVQYYCRDLS--------RPLSDQV 235
            W G+ QS+RP+   + LNIDVSA +FY+   V EFV   C  L         +PL+D  
Sbjct: 200 VWFGFHQSVRPSLWKMMLNIDVSATAFYKAQPVIEFV---CEVLDFKSIEEQQKPLTDSQ 256
Query: 236 RLK 238
           R+K
Sbjct: 257 RVK 259

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	240
4f3t_A	861	Protein argonaute-2; hydrolase/gene regulation, RN	2e-65
4f1n_A	1046	Kpago; argonaute, RNAI, RNAse H, RNA binding prote	4e-46
3ho1_A	685	Argonaute; argonaute, protein-DNA-RNA complex, nuc	7e-11

>4f3t_A Protein argonaute-2; hydrolase/gene regulation, RNAI, slicer, hydrolase-RNA; 2.25A {Homo sapiens} PDB: 4ei1_A 4ei3_A* 1r4k_A 1si2_A 1si3_A Length = 861

 Score =  216 bits (552), Expect = 2e-65
 Identities = 88/244 (36%), Positives = 134/244 (54%), Gaps = 13/244 (5%)

Query: 1   MRFPVRPGFGTVGKKCVVRANHFMVQLAERDIHHYDVSITPEVTSKKINRQIISQLINLY 60
            + P RP FGT G+   ++AN F + + + DI+HY++ I PE   +++NR+I+  ++  +
Sbjct: 25  FKPPPRPDFGTSGRTIKLQANFFEMDIPKIDIYHYELDIKPEKCPRRVNREIVEHMVQHF 84

Query: 61  RLTHLGERMPAYDGMKSIYTAGPLPFESKEFIIKLPDSDPRPSSSTRPRRERQFRVVIRL 120
           +    G+R P +DG K++YTA PLP    +  +++              ++R F+V I+ 
Sbjct: 85  KTQIFGDRKPVFDGRKNLYTAMPLPIGRDKVELEVTLPGEG--------KDRIFKVSIKW 136

Query: 121 ASKPDLYTLQQFLLRRHFEAPYEVIQVLDVVLRAAPSEKHTVVGRSFFSTDLGPVGQLGD 180
            S   L  L   L  R    P+E IQ LDVV+R  PS ++T VGRSFF+   G    LG 
Sbjct: 137 VSCVSLQALHDALSGRLPSVPFETIQALDVVMRHLPSMRYTPVGRSFFTASEGCSNPLGG 196

Query: 181 GVEYWRGYFQSLRPTQMGLSLNIDVSARSFYEPILVTEFVQYYC-----RDLSRPLSDQV 235
           G E W G+ QS+RP+   + LNIDVSA +FY+   V EFV          +  +PL+D  
Sbjct: 197 GREVWFGFHQSVRPSLWKMMLNIDVSATAFYKAQPVIEFVCEVLDFKSIEEQQKPLTDSQ 256

Query: 236 RLKV 239
           R+K 
Sbjct: 257 RVKF 260

>4f1n_A Kpago; argonaute, RNAI, RNAse H, RNA binding protein-RNA complex; 3.19A {Vanderwaltozyma polyspora} Length = 1046

 Score =  163 bits (412), Expect = 4e-46
 Identities = 35/286 (12%), Positives = 75/286 (26%), Gaps = 61/286 (21%)

Query: 1   MRFPVRPGFGTVGKKCVVRANHFMVQLAERD---------------------IHHYDVSI 39
            +   R  +GT G K  +  NH ++ +                         I  Y +  
Sbjct: 17  YKVENRHDYGTKGTKVDILTNHILLAVGNDVPTEKIDKELVPKLDGWWKTAFIFTYHIDF 76

Query: 40  TPEVT--------------SKKINRQIISQLINLYRLTHLGERMPAYDGMKSIYTAGPLP 85
            P+                SK    ++I  L++   + +      A++G  +IY+  PL 
Sbjct: 77  KPQQKGPPRRGKPVPPQELSKPKKYELIEALLDEDEILYKYRDRIAFNGEDTIYSHVPLE 136

Query: 86  FESKEFIIKLPDSDPRPS----------------SSTRPRRERQFRVVIRLASKPDLYTL 129
             +         +  +                         E   ++ ++ + K  L  +
Sbjct: 137 EFTLFDGCWEVSNKQKKKVVPGMGAPSNKASLQKKIDPELEEMVSQITLKFSGKVGLKDI 196

Query: 130 QQFLLRRHFEAPYEVIQVLD------VVLRAAPSEKHTVVGRS----FFSTDLGPVGQLG 179
                 +  E     +  +D      ++     S    +        F   +        
Sbjct: 197 YNDTTTQDTEVQESRMSAIDKTCLLSLLGAKFMSTDDLIFQVQGNKFFIFNNFAKAIPFQ 256

Query: 180 DGVEYWRGYFQSLRPTQMGLSLNIDVSARSFYEPILVTEFVQYYCR 225
            G    +G+  SL     G++LN       F +          +  
Sbjct: 257 IGGYLLQGFTVSLTHVYGGVALNTVSVPAPFIKHTKYLPGDPRFKN 302

>3ho1_A Argonaute; argonaute, protein-DNA-RNA complex, nucleic acid binding Pro RNA complex; 2.60A {Thermus thermophilus} PDB: 3dlb_A* 3dlh_A* 3f73_A* 3hm9_A 3hvr_A 3hxm_A* 3hk2_A 3hjf_A Length = 685

 Score = 60.8 bits (147), Expect = 7e-11
 Identities = 26/216 (12%), Positives = 47/216 (21%), Gaps = 39/216 (18%)

Query: 14  KKCVVRANHFMVQLAER---DIHHYDVSITPEVTSKKINRQIISQLINLYRLTHLGERMP 70
            K  V  N F ++            +V + P    +++   +         +T       
Sbjct: 5   GKTEVFLNRFALRPLNPEELRPWRLEVVLDPPPGREEVYPLLAQVARRAGGVTVR----- 59

Query: 71  AYDGMKSIYTAGPLPFESKEFIIKLPDSDPRPSSSTRPRRERQFRVVIRLASKPDLYTLQ 130
                                    P+      +  R  +   +R+  +     D     
Sbjct: 60  ---------------MGDGLASWSPPEVLVLEGTLARMGQTYAYRLYPKGRRPLDP---- 100

Query: 131 QFLLRRHFEAPYEVIQVLDVVLRAAPSE--KHTVVGRSFFSTDLGPVGQLGDGVEYWRGY 188
                           VL  + R    E  +                   G G     G 
Sbjct: 101 ---------KDPGERSVLSALARRLLQERLRRLEGVWVEGLAVYRREHARGPGWRVLGGA 151

Query: 189 FQSLRPTQMG-LSLNIDVSARSFYEPILVTEFVQYY 223
              L  +  G   L +D + R   E  L     Q +
Sbjct: 152 VLDLWVSDSGAFLLEVDPAYRILCEMSLEAWLAQGH 187

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	240
4f3t_A	861	Protein argonaute-2; hydrolase/gene regulation, RN	100.0
4f1n_A	1046	Kpago; argonaute, RNAI, RNAse H, RNA binding prote	100.0
1u04_A	771	Argonaute, hypothetical protein PF0537; RNAI, sile	99.74
1yvu_A	706	Hypothetical protein AQ_1447; RNAse H fold, RNA bi	99.42
3ho1_A	685	Argonaute; argonaute, protein-DNA-RNA complex, nuc	97.58

>4f3t_A Protein argonaute-2; hydrolase/gene regulation, RNAI, slicer, hydrolase-RNA; 2.25A {Homo sapiens} PDB: 4ei1_A 4ei3_A* 1r4k_A 1si2_A 1si3_A

Probab=100.00  E-value=3e-49  Score=381.51  Aligned_cols=230  Identities=38%  Similarity=0.656  Sum_probs=193.5

Q ss_pred             CCCCCCCCCCCCCCeEEEEeeeeEeEcCCCcEEEeeeEecCCCCchHHHHHHHHHHHHHhhhcccCCCcceecCccceee
Q 026337            1 MRFPVRPGFGTVGKKCVVRANHFMVQLAERDIHHYDVSITPEVTSKKINRQIISQLINLYRLTHLGERMPAYDGMKSIYT   80 (240)
Q Consensus         1 ~~~p~RP~~Gt~G~~i~l~tN~f~i~~~~~~iy~Y~V~i~p~~~~~~~~r~i~~~l~~~~~~~~~~~~~~~yDG~~~lys   80 (240)
                      +++|+|||+||.|++|+|+||||+|++++..+|||||+|.|+..+++++|++++.+++++..+.|+...+||||+++|||
T Consensus        25 ~~~p~RPg~Gt~G~~i~l~aN~F~v~~~~~~ly~Y~V~i~p~~~~~~~~r~i~~~l~~~~~~~~~~~~~~afDG~~~l~s  104 (861)
T 4f3t_A           25 FKPPPRPDFGTSGRTIKLQANFFEMDIPKIDIYHYELDIKPEKCPRRVNREIVEHMVQHFKTQIFGDRKPVFDGRKNLYT  104 (861)
T ss_dssp             CCCCBCCCCCCCSEEEEEEESEEEEECCSCEEEEEEEEEESCSCCHHHHHHHHHHHHHHSCCCCCTTCCCEECSSSEEEE
T ss_pred             ccCCCCCCCCCCCcEEEEEeeeEEEECCCCceeeeeEEeCCCcCcHHHHHHHHHHHHHHhhhhhhcCceEEEcCcceEEE
Confidence            36899999999999999999999999988889999999999988899999999999887644557766789999999999


Q ss_pred             cCCCCCCcceEEEEcCCCCCCCCCCCCCCCCceEEEEEEeecccChHHHHHHHccCCCCCchhHHHHHHHHhhcCCCCCc
Q 026337           81 AGPLPFESKEFIIKLPDSDPRPSSSTRPRRERQFRVVIRLASKPDLYTLQQFLLRRHFEAPYEVIQVLDVVLRAAPSEKH  160 (240)
Q Consensus        81 ~~~L~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~v~i~~~~~i~~~~l~~~~~~~~~~~~~~~iq~Lniilr~~~~~~~  160 (240)
                      +.+||.+....++.+....+        .+++.|+|+|++++++++++|.+|++|.....++++||+||||+|+.++.++
T Consensus       105 ~~~L~~~~~~~~~~v~~~~~--------~~~~~~~V~I~~~~~i~l~~L~~~l~g~~~~~~~~~iq~Lniilr~~~~~~~  176 (861)
T 4f3t_A          105 AMPLPIGRDKVELEVTLPGE--------GKDRIFKVSIKWVSCVSLQALHDALSGRLPSVPFETIQALDVVMRHLPSMRY  176 (861)
T ss_dssp             SSCCSCSSCEEEEECCC---------------CEEEEEEEEEEEEHHHHHHHHHTCSSSCCHHHHHHHHHHHHHHHHHHS
T ss_pred             CCcCCCCCcceEEEEecCCC--------CCCcEEEEEEEEeeecCHHHHHHHhcCCCCCCcHHHHHHHHHHHHhhccccc
Confidence            99999754333343322111        3567899999999999999999999999888889999999999999888889


Q ss_pred             cccccccccCCCCCcccCCCcEEEEeeeeeeeeeeCCeeEEeeeccccccccCCcHHHHHHHHhhc-----CCCCCChhh
Q 026337          161 TVVGRSFFSTDLGPVGQLGDGVEYWRGYFQSLRPTQMGLSLNIDVSARSFYEPILVTEFVQYYCRD-----LSRPLSDQV  235 (240)
Q Consensus       161 ~~~Gr~ff~~~~~~~~~l~~gle~~~G~~~Svr~~~~~l~LNvD~a~~~F~~~~~l~d~i~~~~~~-----~~~~l~~~~  235 (240)
                      ..+||+||++..+...++|+|+|+|+||++||||++++|+||+|++|++|++++||+|+|.++++.     ..++|++++
T Consensus       177 ~~vGR~Ff~~~~~~~~~lg~Gle~w~G~~~Svr~~~~~l~LnvDvs~~~F~~~~~v~d~~~~~~~~~~~~~~~~~~~~~~  256 (861)
T 4f3t_A          177 TPVGRSFFTASEGCSNPLGGGREVWFGFHQSVRPSLWKMMLNIDVSATAFYKAQPVIEFVCEVLDFKSIEEQQKPLTDSQ  256 (861)
T ss_dssp             EEETTEEECCC---CCEEETTEEEEEEEEEEEEECSSSEEEEEEEEEEEEECCEEHHHHHHHHHTCSSCC---CCCCHHH
T ss_pred             cccCCCccCCCCCceeccCCCEEEEeceeEEEEecCCccEEeecccceeEeeCCcHHHHHHHHhcccchhhhccccCHHH
Confidence            999999998764445688999999999999999999999999999999999999999999998632     245688777


Q ss_pred             hhc
Q 026337          236 RLK  238 (240)
Q Consensus       236 ~~~  238 (240)
                      +.+
T Consensus       257 ~~~  259 (861)
T 4f3t_A          257 RVK  259 (861)
T ss_dssp             HHH
T ss_pred             HHH
Confidence            654

>4f1n_A Kpago; argonaute, RNAI, RNAse H, RNA binding protein-RNA complex; 3.19A {Vanderwaltozyma polyspora}

Probab=100.00  E-value=3.7e-40  Score=319.80  Aligned_cols=222  Identities=18%  Similarity=0.196  Sum_probs=168.3

Q ss_pred             CCCCCCCCCCCCCeEEEEeeeeEeEcCCC---------------------cEEEeeeEecCCCC--------------ch
Q 026337            2 RFPVRPGFGTVGKKCVVRANHFMVQLAER---------------------DIHHYDVSITPEVT--------------SK   46 (240)
Q Consensus         2 ~~p~RP~~Gt~G~~i~l~tN~f~i~~~~~---------------------~iy~Y~V~i~p~~~--------------~~   46 (240)
                      .+|.||+|||.|++|.|+||||.+.+.+.                     .||+|+|+|.|+..              ++
T Consensus        18 ~~p~Rp~yGt~G~~v~l~aN~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~i~~~~~~~~~~~~~~~~~~~~~~~   97 (1046)
T 4f1n_A           18 KVENRHDYGTKGTKVDILTNHILLAVGNDVPTEKIDKELVPKLDGWWKTAFIFTYHIDFKPQQKGPPRRGKPVPPQELSK   97 (1046)
T ss_dssp             CCCBCCCCCCCSEEEEEEESEEEEECCTTSCTTTSCTTTSCCCCSTTTSCEEEEEEEEEC-----------------CCH
T ss_pred             cCCCCCCCCCCCcEEEEEeeEEEEecCCCccccccccccccccccccccceEEEEEEEEcccccccccccccCcccccch
Confidence            68999999999999999999999998644                     89999999998643              24


Q ss_pred             HHHHHHHHHHHHHhh-hcccCCCcceecCccceeecCCCC---CCcceEEEEcC-----CCCCCC--------CCCCCCC
Q 026337           47 KINRQIISQLINLYR-LTHLGERMPAYDGMKSIYTAGPLP---FESKEFIIKLP-----DSDPRP--------SSSTRPR  109 (240)
Q Consensus        47 ~~~r~i~~~l~~~~~-~~~~~~~~~~yDG~~~lys~~~L~---~~~~~~~v~~~-----~~~~~~--------~~~~~~~  109 (240)
                      +++++||+.++++.. ...++ ..+||||+++|||..+||   .....+.|++.     ++.++.        .+.....
T Consensus        98 ~k~~~ii~~ll~e~~~~~~~~-~~ia~d~~~~L~s~~~L~~~~l~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  176 (1046)
T 4f1n_A           98 PKKYELIEALLDEDEILYKYR-DRIAFNGEDTIYSHVPLEEFTLFDGCWEVSNKQKKKVVPGMGAPSNKASLQKKIDPEL  176 (1046)
T ss_dssp             HHHHHHHHHHHHSCTTTGGGT-TSEEECSSSEEEESSCGGGSTTCTTCCC------------------------------
T ss_pred             hHHHHHHHHHHHhcchhhhcC-CceeecCccceEECCcCCccccCCCceEEeccccccccCCcccccccccccccccccc
Confidence            567789998887621 01244 469999999999999999   44446777766     322210        0011124


Q ss_pred             CCceEEEEEEeecccChHHHHHHHccCCCCC-----chhHHHHHHHHhhcCCCCC---ccccccc-cccCCC-CCcccCC
Q 026337          110 RERQFRVVIRLASKPDLYTLQQFLLRRHFEA-----PYEVIQVLDVVLRAAPSEK---HTVVGRS-FFSTDL-GPVGQLG  179 (240)
Q Consensus       110 ~~~~~~v~i~~~~~i~~~~l~~~~~~~~~~~-----~~~~iq~Lniilr~~~~~~---~~~~Gr~-ff~~~~-~~~~~l~  179 (240)
                      +++.|+|+|+++++|++++|.+|+.|.+...     +.+++++||+||.+.+...   ...+|++ ||..+. +...+||
T Consensus       177 ~~~~~~V~i~~~~~i~l~dL~~~l~~~~~~~~~~~~~~~~i~aL~~il~~~~~~~~~~i~~vg~nkFF~~~~~~~~~~Lg  256 (1046)
T 4f1n_A          177 EEMVSQITLKFSGKVGLKDIYNDTTTQDTEVQESRMSAIDKTCLLSLLGAKFMSTDDLIFQVQGNKFFIFNNFAKAIPFQ  256 (1046)
T ss_dssp             -CGGGGEEEEEEEEEEGGGGGSCSSCCCTTHHHHHHTCHHHHHHHHHHHHHHHCSSSCEEEETTTEEEECSTTCCEEECS
T ss_pred             cCceEEEEEEEeeecCHHHHHHHHcCCCccccccccchHHHHHHHHHHhhhhhhcCCceEEcCCcccccCCCCCccccCC
Confidence            6788999999999999999999999997642     2678999999999988643   2556655 886542 2568999


Q ss_pred             CcEEEEeeeeeeeeeeCCeeEEeeeccccccccC-----------------CcHHHHHHHHh
Q 026337          180 DGVEYWRGYFQSLRPTQMGLSLNIDVSARSFYEP-----------------ILVTEFVQYYC  224 (240)
Q Consensus       180 ~gle~~~G~~~Svr~~~~~l~LNvD~a~~~F~~~-----------------~~l~d~i~~~~  224 (240)
                      +|+|+|+|||+||||++|+|+||||+++++||++                 ++|+|+|.+++
T Consensus       257 ~Gle~wrGffqSvRpa~~rLlLNvdvs~~aF~k~~~~~~~~~~~~~~~~~p~~lid~l~~~~  318 (1046)
T 4f1n_A          257 IGGYLLQGFTVSLTHVYGGVALNTVSVPAPFIKHTKYLPGDPRFKNNEKEQFTLMDWIIECY  318 (1046)
T ss_dssp             SSEEEEEEEEEEEEEETTEEEEEEEEEEEEEECCSSSCTTSHHHHHCTTCCCCHHHHHHHHH
T ss_pred             CcEEEEEeEeeeEEecCCceEEEEeccceeEEeccccCcccccccccccCCccHHHHHHHHh
Confidence            9999999999999999999999999999999985                 79999999985

>1u04_A Argonaute, hypothetical protein PF0537; RNAI, silencing, PIWI, PAZ, RISC, slicer, RNAse H hydrolase-gene regulation complex; 2.25A {Pyrococcus furiosus} SCOP: b.34.14.1 c.55.3.10 PDB: 1z25_A 1z26_A

Probab=99.74  E-value=3.2e-18  Score=162.28  Aligned_cols=150  Identities=14%  Similarity=-0.007  Sum_probs=112.2

Q ss_pred             eEEEEeeeeEeEc---CCCcEEEeeeEecCCCCchHHHHHHHHHHHHHhhhcccCCCcceecCccc--eeecCCCCCCcc
Q 026337           15 KCVVRANHFMVQL---AERDIHHYDVSITPEVTSKKINRQIISQLINLYRLTHLGERMPAYDGMKS--IYTAGPLPFESK   89 (240)
Q Consensus        15 ~i~l~tN~f~i~~---~~~~iy~Y~V~i~p~~~~~~~~r~i~~~l~~~~~~~~~~~~~~~yDG~~~--lys~~~L~~~~~   89 (240)
                      ++.+.+|||+|..   |+ .+|+|+|++.|+.+.+ ++..++...    . ..+|  .++|||. .  ||++++|+-   
T Consensus         3 ~~~~~~n~~~~~~~~~~~-~~y~y~v~~~p~~~~~-~~~~~~~~~----~-~~~g--~~~fdg~-~~~l~~~~~l~~---   69 (771)
T 1u04_A            3 KAIVVINLVKINKKIIPD-KIYVYRLFNDPEEELQ-KEGYSIYRL----A-YENV--GIVIDPE-NLIIATTKELEY---   69 (771)
T ss_dssp             EEEEEBSEEEBCGGGSCS-CEEEEEC-------------CCHHHH----H-HHTT--EEEEETT-TTEEEESSCCCC---
T ss_pred             ceEEEeeeEEEecccCCC-eeEEEEeecCChHHHH-HHHHHHHHH----H-hhcC--cEEecCc-ceeeeccceecc---
Confidence            5789999999987   45 9999999999998766 544444322    2 2455  6899996 5  999999871   


Q ss_pred             eEEEEcCCCCCCCCCCCCCCCCceEEEEEEeecccChHHHHHHHccCCCCCchhHHHHHHHHhhcCCC-CC-----cccc
Q 026337           90 EFIIKLPDSDPRPSSSTRPRRERQFRVVIRLASKPDLYTLQQFLLRRHFEAPYEVIQVLDVVLRAAPS-EK-----HTVV  163 (240)
Q Consensus        90 ~~~v~~~~~~~~~~~~~~~~~~~~~~v~i~~~~~i~~~~l~~~~~~~~~~~~~~~iq~Lniilr~~~~-~~-----~~~~  163 (240)
                                          ++..+.|+++.++++.                   +|++|+|+|+.+. ++     +..+
T Consensus        70 --------------------~~~~~~~~~~~~~~~~-------------------~~~~n~i~r~~l~~~~~~~~~l~~~  110 (771)
T 1u04_A           70 --------------------EGEFIPEGEISFSELR-------------------NDYQSKLVLRLLKENGIGEYELSKL  110 (771)
T ss_dssp             --------------------SSCCEEEEEECGGGSC-------------------HHHHHHHHHHHHHHTTCSHHHHHHH
T ss_pred             --------------------CCCeEEEEEEEcceec-------------------HHHHHHHHHHHHHHcccchHHHHHH
Confidence                                2235888888888763                   7899999999987 56     8899


Q ss_pred             ccccccCCCCCcccCCCcEEEEeeeeeeeeeeCCeeEEeeeccccccccCCcHHHHHHHH
Q 026337          164 GRSFFSTDLGPVGQLGDGVEYWRGYFQSLRPTQMGLSLNIDVSARSFYEPILVTEFVQYY  223 (240)
Q Consensus       164 Gr~ff~~~~~~~~~l~~gle~~~G~~~Svr~~~~~l~LNvD~a~~~F~~~~~l~d~i~~~  223 (240)
                      ||+||++     .++ +.+++|+|+-+||+..+++++||+|++|++.+ .+||+|+|.++
T Consensus       111 ~r~~~~~-----~~~-~~~~~~~~~~tsi~~~e~~~ll~~di~hkv~r-~~t~~d~~~~~  163 (771)
T 1u04_A          111 LRKFRKP-----KTF-GDYKVIPSVEMSVIKHDEDFYLVIHIIHQIQS-MKTLWELVNKD  163 (771)
T ss_dssp             HTTTSCC-----EEE-TTEEEEEEEEEEEEECSSCEEEEEEEEEEEEE-SSCHHHHTTTC
T ss_pred             hhhcCCC-----ccc-cccEEEECceeeEEecCCceEEEEEeeeeEee-hhHHHHHHHHH
Confidence            9999976     233 46899999999999999999999999999987 68999998775

>1yvu_A Hypothetical protein AQ_1447; RNAse H fold, RNA binding protein, gene regulation; 2.90A {Aquifex aeolicus} SCOP: b.34.14.1 c.55.3.10 PDB: 2f8s_A 2f8t_A 2nub_A

Probab=99.42  E-value=3.9e-13  Score=127.19  Aligned_cols=124  Identities=10%  Similarity=0.134  Sum_probs=93.2

Q ss_pred             ceecCccceeecCCCCCCcceEEEEcCCCCCCCCCCCCCCCCceEEEEEEeecccChHHHHHHHccCCCCCchhHHHHHH
Q 026337           70 PAYDGMKSIYTAGPLPFESKEFIIKLPDSDPRPSSSTRPRRERQFRVVIRLASKPDLYTLQQFLLRRHFEAPYEVIQVLD  149 (240)
Q Consensus        70 ~~yDG~~~lys~~~L~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~v~i~~~~~i~~~~l~~~~~~~~~~~~~~~iq~Ln  149 (240)
                      ..|.-....|...+.+.+..  -.+..             ++.  .|+|++++++..-         .-..+++++|+++
T Consensus        49 ~~~~~~~~~~~~~~~~~~~~--~~~~~-------------~~~--~~~~~~~~~~~~~---------~~~~~~~~~~~~~  102 (706)
T 1yvu_A           49 PTFRREDEFWCAGKVEKDTL--YLTLS-------------NGE--IVELKRVGEEEFR---------GFQNERECQELFR  102 (706)
T ss_dssp             CEEEETTEEEESSCCTTCCC--EEEEC-------------SSS--CEEEEECCCEECC---------CCSCHHHHHHHHH
T ss_pred             ccccccccceeccccccceE--EEEcC-------------CCC--EEEEEEEEEeecc---------CCCCCHHHHHHHH
Confidence            34555567888888775432  33322             122  5669999987610         0013578999999


Q ss_pred             HHhhcCCCCCccccccccccCCCCCcccC---CCcEEEEeeeeeeeeeeC-CeeEEeeeccccccccCCcHHHHHHHH
Q 026337          150 VVLRAAPSEKHTVVGRSFFSTDLGPVGQL---GDGVEYWRGYFQSLRPTQ-MGLSLNIDVSARSFYEPILVTEFVQYY  223 (240)
Q Consensus       150 iilr~~~~~~~~~~Gr~ff~~~~~~~~~l---~~gle~~~G~~~Svr~~~-~~l~LNvD~a~~~F~~~~~l~d~i~~~  223 (240)
                      +++++. .+++..+||+||++.  .+..+   .++||+|+||.+||+..+ ++++||+|++|+ |.+..||+|+|.++
T Consensus       103 ~~~~~~-~l~~~~igr~~~~~~--~~~~i~~~~~~l~iwPG~~tsi~~~e~~~~~L~~DvshK-vlr~~Tvld~l~~~  176 (706)
T 1yvu_A          103 DFLTKT-KVKDKFISDFYKKFR--DKITVQGKNRKIALIPEVNEKVLKSEEGYFLLHLDLKFR-IQPFETLQTLLERN  176 (706)
T ss_dssp             HHHHHT-CHHHHHHHHHHHHHH--HHHEEECSSCEEEEEEEEEEEEEEBSSSCEEEEEEEEEE-EEESSCHHHHHHHC
T ss_pred             HHHHHc-CChHhhhCccccCcc--ccccccCCCCcEEEccCeEEEEEeccCCCeEEEEEeeee-ecccchHHHHHHHh
Confidence            999988 556668999999877  35566   578999999999999999 999999999999 55689999999884

>3ho1_A Argonaute; argonaute, protein-DNA-RNA complex, nucleic acid binding Pro RNA complex; 2.60A {Thermus thermophilus} PDB: 3dlb_A* 3dlh_A* 3f73_A* 3hm9_A 3hvr_A 3hxm_A* 3hk2_A 3hjf_A

Probab=97.58  E-value=0.0014  Score=61.70  Aligned_cols=170  Identities=16%  Similarity=0.130  Sum_probs=105.8

Q ss_pred             eEEEEeeeeEeEc-C--CCcEEEeeeEecCCCCchHHHHHHHHHHHHHhhhcccCCCcceecCccceeecCCCCCC-cce
Q 026337           15 KCVVRANHFMVQL-A--ERDIHHYDVSITPEVTSKKINRQIISQLINLYRLTHLGERMPAYDGMKSIYTAGPLPFE-SKE   90 (240)
Q Consensus        15 ~i~l~tN~f~i~~-~--~~~iy~Y~V~i~p~~~~~~~~r~i~~~l~~~~~~~~~~~~~~~yDG~~~lys~~~L~~~-~~~   90 (240)
                      .+.|.-|-|.++- .  +.+.|.|++.+.|.+...+..+ ++..+..+     .|.  .|---.+.|.|+.+ |.. ..+
T Consensus         6 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~-----~~~--~~~~~~~~~~~~~~-~~~~~~~   76 (685)
T 3ho1_A            6 KTEVFLNRFALRPLNPEELRPWRLEVVLDPPPGREEVYP-LLAQVARR-----AGG--VTVRMGDGLASWSP-PEVLVLE   76 (685)
T ss_dssp             CEEEEEEEEEEEECCTTTSSCEEEEEEEESCCCTTTHHH-HHHHHHHH-----TCS--SEEEETTEEEESSC-TTTSCCE
T ss_pred             ceeEEEeeeecccCChhhCceeEEEEecCCCCCcchHHH-HHHHHHHH-----hCC--eEEeecCceecccC-chhhhcc
Confidence            5789999999974 3  7899999999998765444433 44433322     232  33333367888877 532 122


Q ss_pred             EEEEcCCCCCCCCCCCCCCCCceEEEEEEeecccChHHHHHHHccCCCCCchhHHHHHHHHhhcCCC------CCccccc
Q 026337           91 FIIKLPDSDPRPSSSTRPRRERQFRVVIRLASKPDLYTLQQFLLRRHFEAPYEVIQVLDVVLRAAPS------EKHTVVG  164 (240)
Q Consensus        91 ~~v~~~~~~~~~~~~~~~~~~~~~~v~i~~~~~i~~~~l~~~~~~~~~~~~~~~iq~Lniilr~~~~------~~~~~~G  164 (240)
                      -.|.  .          .+....|++.-.=.+.+++.             ....-+||+.+-|....      .+...-|
T Consensus        77 ~~~~--~----------~~~~~~~~~~~~~~~~~~~~-------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  131 (685)
T 3ho1_A           77 GTLA--R----------MGQTYAYRLYPKGRRPLDPK-------------DPGERSVLSALARRLLQERLRRLEGVWVEG  131 (685)
T ss_dssp             EEEE--C----------SSCEEEEEEEEEEECCCCTT-------------SHHHHHHHHHHHHHHHHHHHHTCSSSEEET
T ss_pred             chhc--c----------ccCCcceeeeecccccCCCC-------------ChHHHHHHHHHHHHHHHHHHHhhhceEEcc
Confidence            2332  1          02334466655555666653             23344555554444332      1222223


Q ss_pred             cccccCCCCCcccCCCcEEEEeeeeeeeeeeC-CeeEEeeeccccccccCCcHHHHHHHH
Q 026337          165 RSFFSTDLGPVGQLGDGVEYWRGYFQSLRPTQ-MGLSLNIDVSARSFYEPILVTEFVQYY  223 (240)
Q Consensus       165 r~ff~~~~~~~~~l~~gle~~~G~~~Svr~~~-~~l~LNvD~a~~~F~~~~~l~d~i~~~  223 (240)
                      .-.+-..   . .-|.|.|+.+|+--.|-++. ++++|.||.+|. |+...++.+|+.+.
T Consensus       132 ~~~~~~~---~-~~~~~~~~~~g~~~~v~~~~~~~~~l~vd~~~r-~~~~~~~~~~l~~~  186 (685)
T 3ho1_A          132 LAVYRRE---H-ARGPGWRVLGGAVLDLWVSDSGAFLLEVDPAYR-ILCEMSLEAWLAQG  186 (685)
T ss_dssp             TEEEEEE---E-EEETTEEEEEEEEEEEEECSSSEEEEEEEEEEE-EEECSCHHHHHHHS
T ss_pred             EEEEeec---C-CCCCceEEecceEEEEEECCCCcEEEEEeehee-ecChhhHHHHHHhC
Confidence            3333211   1 12889999999999999997 899999999997 66789999999883

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	240
d1u04a1	322	b.34.14.1 (A:2-323) Argonaute homologue PF0537 {Py	0.002

>d1u04a1 b.34.14.1 (A:2-323) Argonaute homologue PF0537 {Pyrococcus furiosus [TaxId: 2261]} Length = 322

class: All beta proteins
fold: SH3-like barrel
superfamily: PAZ domain
family: PAZ domain
domain: Argonaute homologue PF0537
species: Pyrococcus furiosus [TaxId: 2261]

 Score = 36.7 bits (85), Expect = 0.002
 Identities = 30/195 (15%), Positives = 53/195 (27%), Gaps = 53/195 (27%)

Query: 15  KCVVRANHFMVQLAERD--IHHYDVSITPEVTSKKINRQIISQLINLYRLTHLGERMPAY 72
           K +V  N   +        I+ Y +   PE   +K    I           ++G  +   
Sbjct: 1   KAIVVINLVKINKKIIPDKIYVYRLFNDPEEELQKEGYSIYRLA-----YENVGIVI-DP 54

Query: 73  DGMKSIYTAGPLPFESKEFIIKLPDSDPRPSSSTRPRRERQFRVVIRLASKPDLYTLQQF 132
           + +  I T   L +E  EFI +                E  F  +     + D       
Sbjct: 55  ENL-IIATTKELEYEG-EFIPEG---------------EISFSEL-----RND------- 85

Query: 133 LLRRHFEAPYEVIQVLDVVLRAAPSE-KHTVVGRSFFSTDLGPVGQLGDGVEYWRGYFQS 191
                    Y+   VL ++      E + + + R F      P        +       S
Sbjct: 86  ---------YQSKLVLRLLKENGIGEYELSKLLRKFRK----PKTFG--DYKVIPSVEMS 130

Query: 192 LRPTQMGLSLNIDVS 206
           +        L I + 
Sbjct: 131 VIKHDEDFYLVIHII 145

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	240
d1u04a1	322	Argonaute homologue PF0537 {Pyrococcus furiosus [T	99.91

>d1u04a1 b.34.14.1 (A:2-323) Argonaute homologue PF0537 {Pyrococcus furiosus [TaxId: 2261]}

class: All beta proteins
fold: SH3-like barrel
superfamily: PAZ domain
family: PAZ domain
domain: Argonaute homologue PF0537
species: Pyrococcus furiosus [TaxId: 2261]

Probab=99.91  E-value=2.5e-25  Score=187.42  Aligned_cols=158  Identities=17%  Similarity=0.080  Sum_probs=113.5

Q ss_pred             eEEEEeeeeEeEcC--CCcEEEeeeEecCCCCchHHHHHHHHHHHHHhhhcccCCCcceecCccceeecCCCCCCcceEE
Q 026337           15 KCVVRANHFMVQLA--ERDIHHYDVSITPEVTSKKINRQIISQLINLYRLTHLGERMPAYDGMKSIYTAGPLPFESKEFI   92 (240)
Q Consensus        15 ~i~l~tN~f~i~~~--~~~iy~Y~V~i~p~~~~~~~~r~i~~~l~~~~~~~~~~~~~~~yDG~~~lys~~~L~~~~~~~~   92 (240)
                      ++.+.+|+|+|+..  +..+|+|+|+|.|++..++++..++.    .++ +..| ..++|||. .||++++|+.+ .+  
T Consensus         1 ~~~~~~N~~ki~~~~~p~~lyqYrV~f~P~~e~~~~r~~ll~----~h~-~~~G-~~~~fDg~-~l~~~kkL~~~-~e--   70 (322)
T d1u04a1           1 KAIVVINLVKINKKIIPDKIYVYRLFNDPEEELQKEGYSIYR----LAY-ENVG-IVIDPENL-IIATTKELEYE-GE--   70 (322)
T ss_dssp             EEEEEBSEEEBCGGGSCSCEEEEEC------------CCHHH----HHH-HTTE-EEEETTTT-EEEESSCCCCS-SC--
T ss_pred             CeEEEEEEEEeecccCCceeEEEEecCCChhhhHHHHHHHHH----HHH-HhcC-eEEecCCc-EEecccccCcc-ee--
Confidence            47899999999643  45799999999999888887665543    333 2334 46789995 79999999853 11  


Q ss_pred             EEcCCCCCCCCCCCCCCCCceEEEEEEeecccChHHHHHHHccCCCCCchhHHHHHHHHhhcCCC-CCccccccccccCC
Q 026337           93 IKLPDSDPRPSSSTRPRRERQFRVVIRLASKPDLYTLQQFLLRRHFEAPYEVIQVLDVVLRAAPS-EKHTVVGRSFFSTD  171 (240)
Q Consensus        93 v~~~~~~~~~~~~~~~~~~~~~~v~i~~~~~i~~~~l~~~~~~~~~~~~~~~iq~Lniilr~~~~-~~~~~~Gr~ff~~~  171 (240)
                                           +.++++.+.....             ....++|++|+++|.++. .++..+||+||++.
T Consensus        71 ---------------------~~~~~~~~~~~~~-------------~~~~~~q~~Nil~r~~m~~l~l~~iGRnyydp~  116 (322)
T d1u04a1          71 ---------------------FIPEGEISFSELR-------------NDYQSKLVLRLLKENGIGEYELSKLLRKFRKPK  116 (322)
T ss_dssp             ---------------------CEEEEEECGGGSC-------------HHHHHHHHHHHHHHTTCSHHHHHHHHTTTSCCE
T ss_pred             ---------------------EEEEEEEEcccCC-------------CcHHHHHHHHHHHHHHhhhcceeeeccccCCCC
Confidence                                 2234444443321             246789999999999998 79999999999876


Q ss_pred             CCCcccCCCcEEEEeeeeeeeeeeCCeeEEeeeccccccccCCcHHHHHHHH
Q 026337          172 LGPVGQLGDGVEYWRGYFQSLRPTQMGLSLNIDVSARSFYEPILVTEFVQYY  223 (240)
Q Consensus       172 ~~~~~~l~~gle~~~G~~~Svr~~~~~l~LNvD~a~~~F~~~~~l~d~i~~~  223 (240)
                      .      .+.+|+||||.+||+..+++++||+|++|++.+ .+||+|+|.++
T Consensus       117 ~------~~~levwPGy~TSI~q~E~~ilLc~disHKVmR-~~Tvld~l~~~  161 (322)
T d1u04a1         117 T------FGDYKVIPSVEMSVIKHDEDFYLVIHIIHQIQS-MKTLWELVNKD  161 (322)
T ss_dssp             E------ETTEEEEEEEEEEEEECSSCEEEEEEEEEEEEE-SSCHHHHTTTC
T ss_pred             C------ccceEEcCCeeeeehhhcCceEEEEEeeeeEee-hhhHHHHHHHH
Confidence            2      257999999999999999999999999999987 69999999765